cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/7gbkxgngpm.1
title: CartoCell, a high-throughput pipeline for accurate 3D image analysis, unveils cell morphology patterns in epithelial cysts.

description: CartoCell is a deep learning-based image processing pipeline for the high-throughput segmentation of whole epithelial cysts acquired at low resolution with minimal human intervention. This pipeline enables high-precision cell segmentation that allows a single cell cartography study of major interest for the search of cellular patterns.

All the pipeline code, feature extraction, and the various single-cell cartography analysis tools are linked below.

The image dataset used can be found in this repository.

All directories mentioned in "steps to reproduce" refer to the release from ComplexOrganizationOfLivingMatter repository named:
Andrés San-Román et al.  NaturalVariation-CartoCell_SingleCellCartographyTools_1.0.0CartoCell
https://github.com/ComplexOrganizationOfLivingMatter/NaturalVariation/releases/tag/CartoCell_SingleCellCartographyTools_1.0.0
DOI: 10.17632/7gbkxgngpm.2
title: CartoCell, a high-content pipeline for accurate 3D image analysis, unveils cell morphology patterns in epithelial cysts.

description: CartoCell is a deep learning-based image processing pipeline for the high-content segmentation of whole epithelial cysts acquired at low resolution with minimal human intervention. This pipeline enables high-precision cell segmentation that allows a single cell cartography study of major interest for the search of cellular patterns.

All the pipeline code, feature extraction, and the various single-cell cartography analysis tools are linked below.

The image dataset used can be found in this repository.

All directories mentioned in "steps to reproduce" refer to the release from ComplexOrganizationOfLivingMatter repository named:
Andrés San-Román et al.  NaturalVariation-CartoCell_SingleCellCartographyTools_1.0.0CartoCell
https://github.com/ComplexOrganizationOfLivingMatter/NaturalVariation/releases/tag/CartoCell_SingleCellCartographyTools_1.0.0
DOI: 10.17632/wkdy2cpxpg.1
title: Ramadan CKD

description: This is a set of 192 patients stage 3a-5 who fasted Ramadan and followed for around 9 months
DOI: 10.17632/y2gz3txd5r.1
title: Clinical characteristics and variants spectrum of NF1 in Chinese patients with Neurofibromatosis type 1: A cross-sectional study

description: Supplement 1,2,3,4,5,6
DOI: 10.17632/y2gz3txd5r.2
title: Clinical characteristics and variants spectrum of NF1 in Chinese patients with Neurofibromatosis type 1: A cross-sectional study

description: Supplement 1,2,3,4,5,6,7
DOI: 10.57745/ez2hs0
title: odyssee-readme-temp-soil.txt

description: :unav
DOI: 10.57745/zdqdu8
title: odyssee-metadata-temp-soil_2021.tab

description: :unav
DOI: 10.57745/olfehx
title: odyssee-data-temp-soil_2021.tab

description: :unav
DOI: 10.17632/y2dk6zk5bh.1
title: DRP images: On a workflow for efficient computation of the permeability of tight sandstones

description: Supplementary materials for the paper titled 'On a Workflow for Efficient Computation of the Permeability of Tight Sandstones' by V. Pimanov, V. Lukoshkin, P. Toktaliev, O. Iliev, E. Muravleva, D. Orlov, et al. The dataset consists of ternary  and multiclass images (solids, pores, unresolved porosity) of sizes 300^3, 600^3, and 1350^3 from tight sandstones as binary arrays (uint8 dtype). These images serve as inputs for the Stokes-Brinkman solver, used for computing the efficient permeability of the porous media. They can be utilized by other researchers for validation purposes. The presented samples were obtained through postprocessing of the original dataset of CT images, available at https://data.mendeley.com/datasets/hgxdh8ps94/1.
DOI: 10.6084/m9.figshare.23694168.v1
title: The SNP file for Prunus campanulata analysis

description: The supplementary SNP file for Prunus campanulata genomic analysis.
DOI: 10.57745/xu80oi
title: genotyping_194popSWF.txt

description: This table (4 541 928 rows x 5 columns) gives the predicted allelic frequencies of maize landraces for 23412 SNP. The first column is the code of the population (194 accessions), the second is the name of the SNP (SNP.Name), the third is the genotype type (AA, AB or BB), the forth is the predicted allelic frequency of allele B (Freq_pred_B) and the last column (ZoneOri) is the origin zone of the landraces (Pyrenees or other districts of SWF).
DOI: 10.57745/n740wi
title: biological_material_maize_SWF_diversity.txt

description: This table (194 rows x 12 columns) describes the 194 accessions of maize landraces from south-west of France genotyped with the 50K Illumina Infinium HD array. 12 columns indicate the code of the landrace in the genebank (Accession_ID), the code in the study (Code), the commonname, district, LatsiteColl, LongSiteColl and DOI are the passport data. Allelic richness (Allelic_richness) and expected heterozygotity of Nei (Expected_heterozygotity) are obtained on 23412 SNP. The coefficient of admixture obtained for 2 clusters are given for Eastern South West of France (E-SWF) and Western South West of France (W-SWF). The last column gives the cluster. "NA" indicates missing data. Code is the identifier used in genotyping data matrix.
DOI: 10.5281/zenodo.8158520
title: Data files for 'Tan et al., (2023). Structural heterogeneity-controlled rupture process of the 2021 Mw 7.1 Fukushima, Japan earthquake revealed by joint inversion of seismic and geodetic data'

description: slip model.dat: rupture model of the 2021 Mw 7.1 Fukushima earthquake In 'slip model.dat', each row contains the moment rate function of each sub-fault. The numbers of the sub-faults are given in the first two columns.
DOI: 10.5281/zenodo.8158519
title: Data files for 'Tan et al., (2023). Structural heterogeneity-controlled rupture process of the 2021 Mw 7.1 Fukushima, Japan earthquake revealed by joint inversion of seismic and geodetic data'

description: slip model.dat: rupture model of the 2021 Mw 7.1 Fukushima earthquake In 'slip model.dat', each row contains the moment rate function of each sub-fault. The numbers of the sub-faults are given in the first two columns.
DOI: 10.17632/t899rgx3nv.1
title: Absence of mitochondrial SLC25A51 enhances PARP1-dependent DNA repair by increasing nuclear NAD+ levels

description: Raw data of the publication "Absence of mitochondrial SLC25A51 enhances PARP1-dependent DNA repair by increasing nuclear NAD+ levels" by Anka Güldenpfennig et al., Nucleic Acid Research (2023)
DOI: 10.17632/zgfyjzg7rj.1
title: An optimal Network Flow-based Search Space Reduction Algorithm for minimizing the retrieval time for the scheduling load retrieval problem in a Puzzled-Based Storage system

description: The raw material in the paper called "An optimal Network Flow-based Search Space Reduction Algorithm for minimizing the retrieval time for the scheduling load retrieval problem in a Puzzled-Based Storage system".
DOI: 10.17632/zgfyjzg7rj.2
title: An optimal Network Flow-based Search Space Reduction Algorithm for minimizing the retrieval time for the scheduling load retrieval problem in a Puzzled-Based Storage system

description: The raw material in the paper called "An optimal Network Flow-based Search Space Reduction Algorithm for minimizing the retrieval time for the scheduling load retrieval problem in a Puzzled-Based Storage system".
DOI: 10.17632/vzw499fr6r.1
title: BAGOS OF REGION 1

description: A Social Science Research on the life of Indigenous People
DOI: 10.17632/bymd5rssg6.1
title: Supplementary material for "Dose response to post-ruminal urea in lactating dairy cattle" by Nichols et al.

description: Supplementary material for "Dose response to post-ruminal urea in lactating dairy cattle" by Nichols et al.
DOI: 10.17632/4c7wngjjn6.1
title: Risk of Infections with JAKi treatment for Atopic dermatitis - Supplemental File

description: This document contains supplemental information regarding the methodology and results of this study. Additional details on the inclusion and exclusion criteria, statistical analysis, and results of meta-analysis that could not be included in the manuscript due to space limitations are described in this document.
DOI: 10.17632/pyg4ss7f5d.1
title: High speed video of mitral valve prosthesis prototype

description: This MP4 file contains a high speed film of a mitral valve prosthesis prototype going through a single simulated heart cycle in a HKP 2.0 hemodynamic testing device.
DOI: 10.17632/vcwttwj4z7.1
title: Data

description: Western blot and confocal images
DOI: 10.17632/s3swc5459t.1
title: mitral valve prosthesis hemodynamic data

description: This data contains measurements of various hemodynamic parameters within a hemodynamic testing device of the type HKP 2.0.
The tested valves include the data of a newly developed prototype as well as a biological valve (BP => Edwards Perimount 23mm) and a mechanical valve (MP => 23 mm bileaflet valve, St. Jude Medical) as references.
DOI: 10.17632/bpjcbdkj4c.1
title: simulating lake ice phenology using a coupled atmosphere-lake model at lake Nam Co

description: This is a supporting data for 'simulating lake ice phenology using a coupled atmosphere-lake model at lake Nam Co'.
DOI: 10.6084/m9.figshare.21909822
title: Data and codes for exploring global centers of neo- and paleoendemism in seed <em>plants </em>

description: Data and codes from Cai et al., 2023, PNAS.
DOI: 10.17632/zdmn5w6zw7.2
title: Self-stabilization of barchan dune chasing

description: Barchan dunes are often found in a variety of environments. They exhibit group-like self-stabilizing characteristics when interacting with each other. Under the premise of local similarity, water tunnel experiments have been widely used to study the fascinating dune interactions, especially contact interactions, i.e., collisions; however, non-contact interactions (i.e., chasing) and the fluid mechanisms behind them have not been studied sufficiently. To bridge this gap, we performed water tunnel experiments combined with numerical simulations to demonstrate the flow structure around two chasing dunes. Our results suggest that the distance between two dunes may become stable due to a combination of three factors: repulsion effect between the two dunes, which widens the distance, and impediment to downstream dune movement, embracing effect which shrinks the distance, and the difference in dune size, whose specific effect depends on the relative position of the two dunes. The first two factors are achieved by two special vortex structures. Based on this model, we propose a scaling law to describe the equilibrium of the dune chasing and a governing equation to explain the breakdown of such equilibrium, and they are both experimentally verified. Our model provides a framework to explain the self-stabilizing mechanisms of barchan dune swarms. The supporting information contains eight movies and their accompanying images as examples of our experiments, as well as the raw data of the dune distance over time of all the tests.
DOI: 10.17632/zdmn5w6zw7.3
title: Self-stabilization of barchan dune chasing

description: Barchan dunes are often found in a variety of environments. They exhibit group-like self-stabilizing characteristics when interacting with each other. Under the premise of local similarity, water tunnel experiments have been widely used to study the fascinating dune interactions, especially contact interactions, i.e., collisions; however, non-contact interactions (i.e., chasing) and the fluid mechanisms behind them have not been studied sufficiently. To bridge this gap, we performed water tunnel experiments combined with numerical simulations to demonstrate the flow structure around two chasing dunes. Our results suggest that the distance between two dunes may become stable due to a combination of three factors: repulsion effect between the two dunes, which widens the distance, and impediment to downstream dune movement, embracing effect which shrinks the distance, and the difference in dune size, whose specific effect depends on the relative position of the two dunes. The first two factors are achieved by two special vortex structures. Based on this model, we propose a scaling law to describe the equilibrium of the dune chasing and a governing equation to explain the breakdown of such equilibrium, and they are both experimentally verified. Our model provides a framework to explain the self-stabilizing mechanisms of barchan dune swarms. The supporting information contains eight movies and their accompanying images as examples of our experiments, as well as the raw data of the dune distance over time of all the tests.
DOI: 10.17632/zdmn5w6zw7.1
title: Self-stabilization of barchan dune chasing

description: Barchan dunes are often found in a variety of environments. They exhibit group-like self-stabilizing characteristics when interacting with each other. Under the premise of local similarity, water tunnel experiments have been widely used to study the fascinating dune interactions, especially contact interactions, i.e., collisions; however, non-contact interactions (i.e., chasing) and the fluid mechanisms behind them have not been studied sufficiently. To bridge this gap, we performed water tunnel experiments combined with numerical simulations to demonstrate the flow structure around two chasing dunes. Our results suggest that the distance between two dunes may become stable due to a combination of three factors: repulsion effect between the two dunes, which widens the distance, and impediment to downstream dune movement, embracing effect which shrinks the distance, and the difference in dune size, whose specific effect depends on the relative position of the two dunes. The first two factors are achieved by two special vortex structures. Based on this model, we propose a scaling law to describe the equilibrium of the dune chasing and a governing equation to explain the breakdown of such equilibrium, and they are both experimentally verified. Our model provides a framework to explain the self-stabilizing mechanisms of barchan dune swarms. This supporting information contains eight movies and their accompanying images as examples of our experiments.
DOI: 10.17632/89zwbvyr3s.1
title: Martin et al. 2023 Tubulovesicula laticaudi morphometrics and 28S rDNA alignment

description: Dataset to accompany manuscript: Martin et al. 2023. Polyphyly of the Dinurinae Looss, 1907 (Digenea: Hemiuridae) and resurrection of the Mecoderinae Skrjabin & Guschanskaja, 1954 based on novel collection of Tubulovesicula laticaudi Parukhin, 1969 from marine elapid snakes in Sri Lanka. Parasitology International.
DOI: 10.17632/c232vytrjx.1
title: POLICIES FOR CARBON-ZERO TARGETS: EXAMINING THE SPILLOVER EFFECTS OF RENEWABLE ENERGY AND PATENT APPLICATIONS ON ENVIRONMENTAL QUALITY IN EUROPE

description: the data and code was use for the study POLICIES FOR CARBON-ZERO TARGETS: EXAMINING THE SPILLOVER EFFECTS OF RENEWABLE ENERGY AND PATENT APPLICATIONS ON ENVIRONMENTAL QUALITY IN EUROPE
DOI: 10.17632/yv7mkjgrdf.1
title: BMP2

description: The protein encoded by this gene belongs to the transforming growth factor-beta (TGFB) superfamily. The encoded protein acts as a disulfide-linked homodimer and induces bone and cartilage formation.
DOI: 10.5281/zenodo.7936181
title: A bovine GWAS reveals determinants of mobilization rate and dynamics of endogenous retroviruses

description: We develop a novel method to measure the rate of ERVK[2-1-LTR] mobilization in the male germline, and show that this rate averages 1 per 150 sperm cells, yet varies more than ten-fold between animals. We perform a genome wide association study with 430 bulls and identify eight loci that affect ERVK[2-1-LTR] mobilization rate. We provide strong evidence that ERVK[2-1-LTR] elements in four of these, cause the association. We generate an exhaustive catalogue of ERVK[2-1-LTR] elements for the bovine, and show that is composed for 15% of 10 Kb <em>C</em>-type autonomous elements encoding GAG, PRO, POL and ENV genes, and 85% of 6.8 Kb <em>D</em>-type non-autonomous elements devoid of functional genes. We show that &gt;25% of the variance of ERVK[2-1-LTR] mobilization rate is determined by the number of <em>C</em>-type elements in the genome, yet that <em>de novo</em> ERVK[2-1-LTR] insertions are dominated by <em>D</em>-type elements.
DOI: 10.5281/zenodo.7936180
title: A bovine GWAS reveals determinants of mobilization rate and dynamics of endogenous retroviruses

description: We develop a novel method to measure the rate of ERVK[2-1-LTR] mobilization in the male germline, and show that this rate averages 1 per 150 sperm cells, yet varies more than ten-fold between animals. We perform a genome wide association study with 430 bulls and identify eight loci that affect ERVK[2-1-LTR] mobilization rate. We provide strong evidence that ERVK[2-1-LTR] elements in four of these, cause the association. We generate an exhaustive catalogue of ERVK[2-1-LTR] elements for the bovine, and show that is composed for 15% of 10 Kb <em>C</em>-type autonomous elements encoding GAG, PRO, POL and ENV genes, and 85% of 6.8 Kb <em>D</em>-type non-autonomous elements devoid of functional genes. We show that &gt;25% of the variance of ERVK[2-1-LTR] mobilization rate is determined by the number of <em>C</em>-type elements in the genome, yet that <em>de novo</em> ERVK[2-1-LTR] insertions are dominated by <em>D</em>-type elements.
DOI: 10.34740/kaggle/dsv/6153652
title: AutoXGB
DOI: 10.5281/zenodo.8158276
title: Dataset of archaeobotanical wood charcoal records from northwest China

description: To explore the prehistoric human-environmental interactions along the ancient Silk Road, we provide a synthesis of archaeobotanical wood charcoal records from northwest China. The dataset includes the taxa and total number of wood charcoal fragments, and absolute count of each species identified from 39 archaeological site. The general information of these archaeological sites, including latitude, longitude, region, cultural context, and AMS14C dating results is also added into this dataset.
DOI: 10.22024/unikent/01.01.489
title: Magnetic property data on Ln(OH)3 phases

description: X-ray diffraction and magnetic property measurements, including magnetocaloric values, on Ln(OH)3 phases
DOI: 10.57745/bdbmf4
title: 20230216-bioclim-metadata-temp-soil_hobo.tab

description: :unav
DOI: 10.57745/wne6nl
title: bioclim-readme-temp-soil.txt

description: :unav
DOI: 10.57745/eyn5hd
title: 20230216-bioclim-data-temp-soil_hobo.tab

description: :unav
DOI: 10.57745/hv9ztj
title: 20230217-bioclim-metadata-temp-soil_geop.tab

description: :unav
DOI: 10.57745/wefekk
title: 20230217-bioclim-data-temp-soil_geop.tab

description: :unav
DOI: 10.5525/gla.researchdata.1470
title: Measurement of directional atomic modulation direction using the azimuthal variation of first order Laue zone electron diffraction

description: Data that generates the figures in the associated article and shows how the calculations are done.
DOI: 10.5525/gla.researchdata.1456
title: A Marshland Material World: Podcast Interview

description: Recording and automated transcript of the researcher’s interview with Dr Jaafar Jotheri on the marshlands of southern Iraq.
DOI: 10.5525/gla.researchdata.1468
title: A Description of the Battle of Waterloo. Also Called The Battle of Mont-Saint-Jean or the Belle Alliance

description: This is a digitised copy of a manuscript held in Archives & Special Collections in the University of Glasgow Library. It consists of three sections: First section, paginated with Roman numerals, I to VI. Page I 'Preliminary, or, Introductory Observations'. Page III 'Introductory Observations, Previous to the Important and Memorable, Battle of Waterloo'. Page V 'Introductory Observations'. Second Section, consecutively numbered 1 to 139. “The Battle of Waterloo. Or the Price of Complete Victory, on the plain’s [sic] of Mont-Saint-Jean, And, Belle Alliances. With many circumstantial details, In the Short Campigne [sic] of Napoleon Buonaparte [sic] in 1815. And other important matters, of the Allied army. &c By A Britain [sic].” Third Section – An Addendum. Section with an introductory page, first sentence reads 'N. B. The Publisher begs to observe, that the following pages is an essential part to be added to the description of the Battle of Waterloo.' Bottom of the introductory page of the addendum has been signed with the initials 'T.K' Subsequent pages of the addition are numbered 1 to 11. Page 1 titled 'Battle of Waterloo
DOI: 10.5525/gla.researchdata.1417
title: Common lizard microhabitat selection varies by sex, parity mode, and colouration

description: Datasest of lizard, colour, habitats Please note that the data files associated with this dataset will be temporarily available through the 'Request Data' button, until a technical issue can be resolved.
DOI: 10.5519/qd.yvehhbo3
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (58 records)
DOI: 10.57745/o5dhvx
title: gloria-metadata-temp-soil_2021.tab

description: :unav
DOI: 10.57745/t9igzi
title: gloria-data-temp-soil_2021.tab

description: :unav
DOI: 10.57745/yzxuav
title: gloria-readme-temp-soil.txt

description: :unav
DOI: 10.5517/ccdc.csd.cc201q1v
title: CCDC 1848686: Experimental Crystal Structure Determination

description: Related Article: Varun Tej Raviprolu, Sarah E. McArthur, Isaac Banda, Aaron Gregory, Scott G. McArthur, Steven P. Fisher, Vincent Lavallo|2022|Chem.Commun.|58|10580|doi:10.1039/D2CC02596E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28fjs1
title: CCDC 2098383: Experimental Crystal Structure Determination

description: Related Article: Junyi Qiao, Xinyao Liu, Lirong Zhang, Jarrod F. Eubank, Xin Liu, Yunling Liu|2022|J.Am.Chem.Soc.|144|17054|doi:10.1021/jacs.2c06680
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23702262
title: Fig4

description: Experimental data presented in Fig.4
DOI: 10.6084/m9.figshare.23702262.v1
title: Fig4

description: Experimental data presented in Fig.4
DOI: 10.25442/hku.23558841
title: Supporting data for "Development of An AEC Enterprise-Level Digital Maturity Assessment Model: based on HKEX ESG perspective"

description: 1. pictures - all figures and draft figure in ppt by Mr. ZHENG Yu, which utilized into the thesis of ZHENG's PhD degree. 2. Delphi data- collection of Delphi study with personal data which utilized into surpporting the Delphi result of the thesis of ZHENG's PhD degree. 3. 2HK_casedata+analysis - casedata of DSD and WSD project and other 8 case data analysis which collected from Mr. LI, Xiong Yi and surpporting the result of case study in the thesis of ZHENG's PhD degree. 4. citespace-original records of publications from WOS whcih could be processed by Citespace and supporting the citespace result in the thesis of ZHENG's PhD degree. 5. README TEXT