cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1448429.08fu
title: SH1448429.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1448430.08fu
title: SH1448430.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1597016.08fu
title: SH1597016.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1597017.08fu
title: SH1597017.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.25549/one-c4-31067
title: Manuel Boyfrank, letters (1960/1964)

description: Monwell boyFrank (Manuel Boyfrank), letters and pamphlets (1960/1964)
DOI: 10.15156/bio/sh1448431.08fu
title: SH1448431.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1448432.08fu
title: SH1448432.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1597018.08fu
title: SH1597018.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.6845014
title: TrypTag: plate L9098 (replicate dated 20170921)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9098, replicate dated 20170921.
DOI: 10.5281/zenodo.6845013
title: TrypTag: plate L9098 (replicate dated 20170921)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9098, replicate dated 20170921.
DOI: 10.5281/zenodo.7071352
title: TrypTag: plate L9098 (replicate dated 20170921)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9098, replicate dated 20170921.
DOI: 10.5281/zenodo.6845146
title: TrypTag: plate L9102 (replicate dated 20180811)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9102, replicate dated 20180811.
DOI: 10.5281/zenodo.6845145
title: TrypTag: plate L9102 (replicate dated 20180811)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9102, replicate dated 20180811.
DOI: 10.5281/zenodo.7071355
title: TrypTag: plate L9102 (replicate dated 20180811)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate L9102, replicate dated 20180811.
DOI: 10.5281/zenodo.6846475
title: TrypTag: plate R4205 (replicate dated 20180119)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4205, replicate dated 20180119.
DOI: 10.5281/zenodo.6846476
title: TrypTag: plate R4205 (replicate dated 20180119)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4205, replicate dated 20180119.
DOI: 10.5281/zenodo.7071357
title: TrypTag: plate R4205 (replicate dated 20180119)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4205, replicate dated 20180119.
DOI: 10.5281/zenodo.6846710
title: TrypTag: plate R4212 (replicate dated 20170320)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4212, replicate dated 20170320.
DOI: 10.5281/zenodo.6846711
title: TrypTag: plate R4212 (replicate dated 20170320)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4212, replicate dated 20170320.
DOI: 10.5281/zenodo.7071358
title: TrypTag: plate R4212 (replicate dated 20170320)

description: TrypTag genome-wide protein localisation project data. Widefield epifluorescence microscope images of protein subcellular localisation in the unicellular eukaryotic pathogen <i>Trypanosoma brucei</i> by endogenous tagging with mNeonGreen (mNG). Raw microscopy data and per-cell line localisation annotation for plate R4212, replicate dated 20170320.
DOI: 10.34740/kaggle/dsv/4193516
title: 2021 World Population (updated daily)
DOI: 10.5066/f70g3h6g
title: Topobathymetric Lidar Survey of Breton and Gosier Islands, Louisiana, January 16 and 18, 2014

description: This dataset contains binary point-cloud data and a Digital Elevation Model (DEM), produced from remotely sensed, geographically referenced topobathymetric measurements encompassing the Breton Island and Gosier Islands, LA study area. The original area of interest was buffered by 100 meters to ensure complete coverage, resulting in approximately 75 square miles of lidar data. The Breton Island Lidar project called for the planning, acquisition, processing, and derivative products of topobathymetric lidar data, collected at a nominal pulse spacing (NPS) of 0.5-0.45 meters (4-5 points/square meter). Lidar acquisition was prioritized to coincide with the lowest tide possible. Water clarity was also assessed and deemed acceptable prior to acquisition flights. The data, in meters, are projected to UTM Zone 16 North and referenced horizontally to the NAD83 (2011) datum and vertically to the NAVD88 (GEOID12A) datum. The classified point-cloud data were delivered in LAS v1.2 format and the merged DEM was converted to a GeoTIFF file. Each LAS file contains data in a 1-kilometer by 1-kilometer tile named according to the US National Grid conventions. The final product was a DEM for Breton Island along with a LAZ file for both Breton Island and Gosier Islands. For further information regarding data collection and/or processing methods refer to USGS Open-File Report Analysis of Shoreline and Geomorphic Change for Breton Island, Louisiana from 1869 to 2014 (https://doi.org/10.3133/ofr20161039).
DOI: 10.6084/m9.figshare.21081553
title: zoanthus_pulchellus_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21081553.v1
title: zoanthus_pulchellus_zanfona_1.fasta.gz

description: .......
DOI: 10.5281/zenodo.6583509
title: In silico investigation of Alsin RLD conformational dynamics and phosphoinositides binding mechanism

description: Raw data of the publication "In silico investigation of Alsin RLD conformational dynamics and phosphoinositides binding mechanism"
DOI: 10.5281/zenodo.6583510
title: In silico investigation of Alsin RLD conformational dynamics and phosphoinositides binding mechanism

description: Raw data of the publication "In silico investigation of Alsin RLD conformational dynamics and phosphoinositides binding mechanism"
DOI: 10.14459/2022mp1684458
title: Data underlying the publication: Dispersive transport dynamics in porous media emerge from local correlations

description: The dataset contains code and raw data used in the publication "Dispsersive transport dynamics in porous media emerge from local correlations". The provided code allows the generation of porous media patterns used in the publication and to run dispersive spread simulations in porous media. A mathematica notebook is included to allow the tracktability of the calculations performed in the publication. The data provided includes the microscopy data used to measure the width of the dispersive front width increasing disoroder, the simulation results of the dispersive spread and the used porous media designs, and PIVlab data.
DOI: 10.6084/m9.figshare.20526910
title: Dipeptidyl peptidase 4-inhibitor treatment was associated with a reduced incidence of neoplasm in patients with type 2 diabetes: a meta-analysis of 115 randomized controlled trials with 121961 participants

description: To evaluate the association between dipeptidyl peptidase 4 inhibitor (DPP-4i) and the incidence of neoplasm in patients with type 2 diabetes (T2D). Pubmed, Medline, Embase, the Cochrane Central Register of Controlled Trials and <i>Clinicaltrial.gov</i> website were searched from May 2002 to December 2021. Randomized controlled trials with reports of neoplasm events which compared DPP-4i versus non-DPP-4i users. Generally, DPP-4i was associated with a decreased incidence of overall neoplasm events in patients with T2D when compared with non-DPP-4i agents (OR = 0.91, 95%CI, 0.8 to 0.97). Moreover, the incidence of rectal neoplasm, especially rectal malignant neoplasm, and the incidence of skin neoplasm were significantly decreased in DPP-4i users. The overall neoplasm events were less frequent in DPP-4i users who were elderly, or male, or obese, or Caucasian, or with over 10 years of diabetes, or with follow-up duration over 52 weeks. DPP-4i was associated with decreased risks of overall neoplasm, rectal neoplasm, rectal malignant neoplasm and skin neoplasm in patients with T2D. The overall neoplasm events were less frequent in patient with DPP-4i treatment who were elderly, male, obese, Caucasian, with long diabetes durations and with long follow-up durations. Further investigations are still required. CRD42021273627.
DOI: 10.6084/m9.figshare.21081565
title: umimayanthus_chanpuru_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21081565.v1
title: umimayanthus_chanpuru_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.13580633
title: Supplementary material from "Bird genetic databases need improved curation and error reporting to NCBI"

description: The dataset provides the curated GenBank records from cytochrome-b for all Aves species. The associated manuscript is published in IBIS, doi:
DOI: 10.5281/zenodo.7057640
title: Unidirectional transmembrane photoelectron transfer with artificial metallopeptides

description: Unidirectional transmembrane electron transfer is an essential process in natural photosynthesis, where it plays a key role in separating reaction products and slowing charge recombination.<sup>1</sup> Making artificial molecules that functionally mimic photosynthetic proteins and achieve transmembrane electron transfer is already a chemical endeavour.<sup>2–7</sup> Distinguishing genuine transmembrane electron transfer through an impermeable lipid membrane, from light-induced leakage of electron donors through the membrane followed by photoelectron transfer on one side of the bilayer, is even more difficult.<sup>8–10</sup>Here, we report two artificial metallopeptides, <strong>WALP23-Ru<sub>2</sub></strong> and <strong>WALP23-Re<sub>2</sub></strong>, that drive photoelectron transfer from an electron donor located inside a liposome, to an acceptor located outside. A sensitive membrane leakage assay was used to demonstrate that <strong>WALP23-Re<sub>2</sub></strong> indeed achieved genuine photoelectron transfer through the membrane, with negligible contribution from leakage. By contrast, photoelectron transfer with <strong>WALP23-Ru<sub>2</sub></strong> was clearly the result of leakage of the electron donor through the membrane, followed by photoinduced electron transfer on one side of the membrane. These results demonstrate the unique potential of neutral metallopeptides such as <strong>WALP23-Re<sub>2</sub></strong> to drive transmembrane electron transfer in artificial photosynthetic systems, while highlighting the importance of leakage studies for the understanding of how such systems really work.
DOI: 10.5281/zenodo.7057639
title: Unidirectional transmembrane photoelectron transfer with artificial metallopeptides

description: Unidirectional transmembrane electron transfer is an essential process in natural photosynthesis, where it plays a key role in separating reaction products and slowing charge recombination.<sup>1</sup> Making artificial molecules that functionally mimic photosynthetic proteins and achieve transmembrane electron transfer is already a chemical endeavour.<sup>2–7</sup> Distinguishing genuine transmembrane electron transfer through an impermeable lipid membrane, from light-induced leakage of electron donors through the membrane followed by photoelectron transfer on one side of the bilayer, is even more difficult.<sup>8–10</sup>Here, we report two artificial metallopeptides, <strong>WALP23-Ru<sub>2</sub></strong> and <strong>WALP23-Re<sub>2</sub></strong>, that drive photoelectron transfer from an electron donor located inside a liposome, to an acceptor located outside. A sensitive membrane leakage assay was used to demonstrate that <strong>WALP23-Re<sub>2</sub></strong> indeed achieved genuine photoelectron transfer through the membrane, with negligible contribution from leakage. By contrast, photoelectron transfer with <strong>WALP23-Ru<sub>2</sub></strong> was clearly the result of leakage of the electron donor through the membrane, followed by photoinduced electron transfer on one side of the membrane. These results demonstrate the unique potential of neutral metallopeptides such as <strong>WALP23-Re<sub>2</sub></strong> to drive transmembrane electron transfer in artificial photosynthetic systems, while highlighting the importance of leakage studies for the understanding of how such systems really work.
DOI: 10.5281/zenodo.7071480
title: S1 Table

description: S1 Table: Detailed housing and husbandry conditions in each rearing facility (a) and testing laboratory (b).
DOI: 10.5281/zenodo.7071479
title: S1 Table

description: S1 Table: Detailed housing and husbandry conditions in each rearing facility (a) and testing laboratory (b).
DOI: 10.5281/zenodo.7071521
title: SciExpeM - 10.5281/zenodo.7071521

description: Jallais, S.; Bonneau, L.; Auzanneau, M.; Naudet, V.; Bockel-Macal, S. - Industrial &Amp; Engineering Chemistry Research, 2002, (41), 5659-5667
DOI: 10.5281/zenodo.7071520
title: SciExpeM - 10.5281/zenodo.7071521

description: Jallais, S.; Bonneau, L.; Auzanneau, M.; Naudet, V.; Bockel-Macal, S. - Industrial &Amp; Engineering Chemistry Research, 2002, (41), 5659-5667
DOI: 10.6084/m9.figshare.21081688
title: supplementary Table 1 _ Primers

description: Supplementary table 1
DOI: 10.6084/m9.figshare.21081688.v1
title: supplementary Table 1 _ Primers

description: Supplementary table 1
DOI: 10.5281/zenodo.7071537
title: SciExpeM - 10.5281/zenodo.7071537

description: Jallais, S.; Bonneau, L.; Auzanneau, M.; Naudet, V.; Bockel-Macal, S. - Industrial &Amp; Engineering Chemistry Research, 2002, (41), 5659-5667
DOI: 10.5281/zenodo.7071536
title: SciExpeM - 10.5281/zenodo.7071537

description: Jallais, S.; Bonneau, L.; Auzanneau, M.; Naudet, V.; Bockel-Macal, S. - Industrial &Amp; Engineering Chemistry Research, 2002, (41), 5659-5667
DOI: 10.6084/m9.figshare.21081706
title: Supplementary Table 2 - Proximities

description: <strong>Supplementary Table 2</strong>
DOI: 10.6084/m9.figshare.21081706.v1
title: Supplementary Table 2 - Proximities

description: <strong>Supplementary Table 2</strong>