cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6396992
title: Collaborative task scheduling with new task arrival in cloud manufacturing using improved multi-population biogeography-based optimization

description: This is the experimental data of the manuscript entitled "Collaborative task scheduling with new task arrival in cloud manufacturing using improved multi-population biogeography-based optimization". All data are generated through computer simulation and saved in the file with txt format. The data are consistent with the real-world case. The “illustrative case data.txt” is used in Section 5.2 as illustrative examples corresponding to table 1 and table 2, respectively. Other data are used in Section 5.3 and 5.4.
DOI: 10.25582/data.2023-01.2721356/2292938
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721408/2292939
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721524/2292940
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721175/2292941
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721596/2292942
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.7445600
title: Tree, xml, and log files for Fig. S8 [B] in Cole et al. (2019).

description: This file contains the tree, log and xml files for the calibrated Yule penguin phylogeny (Fig S8 [B]) in Cole et al. (2019).
DOI: 10.25582/data.2023-01.2721648/2292943
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721492/2292944
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721235/2292945
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.7445612
title: Tree, xml and log files for the calibrated tests (Fig. S7) in Cole et al. 2019.

description: This file contains the tree, log and xml files for the calibrated test files (Birth death and calibrated yule process model) in Cole et al. (2019) (Fig. S7), with <i>Phoebastria albatrus</i> as the outgroup.
DOI: 10.6084/m9.figshare.21077107
title: Gridded datasets for Japan: total, male, and female populations from 2001-2020

description: Japan is one of the highly urbanized and severely aging society. In an aging society, chronic disease and disability are prevalent, and the population is sensitive to environmental issues and climate change. To detect the impacts of population changes, formulate the population and public health policies, and assist environmental applications, the high-resolution and accurate gridded population dataset is strongly desired. To provide basic data for these studies, we create an open access annual dataset containing the total, male, and female population counts in each grid at a 500-m resolution from 2001 to 2020. The yearly population dataset is based on the 4th-level mesh data from the Statistics Bureau of Japan to make it easy to use. The dataset is provided here alongside the descriptions of the data and methods used in the fitting, cross-validation, and prediction processes. 

The total population data are stored in 20 attributes, named the “X0000” style. The “0000” of “X0000” represents the four-digit year. For example, the attribute “X2001” reports the total 2001 population in the mesh. The dataset also preserves the direct output from the random forest and the logarithms of the total population. The attributes of the logarithms of the total population in each year are named in “X0000_log” style. The “0000” of “X0000_log” also stands for the four-digit year. The attributes of the female population, the logarithm of the female population, the male population, and the logarithm of the male population are written as “X0000_fema”, “X0000_fe_l”, “X0000_male”, and “X0000_ma_l”, respectively. 

The accuracy of the models constructed to predict the total, male, and female populations are 92.09%, 91.92%, and 92.16%, respectively.
DOI: 10.25582/data.2023-01.2721077/2292946
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721654/2292947
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721192/2292948
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721448/2292949
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.16880266
title: Additional file 7 of Validating biomarkers and models for epigenetic inference of alcohol consumption from blood

description: Additional file 7: Tables S21. Providing the coefficients for our two new models including four-categories for each marker set.
DOI: 10.6084/m9.figshare.16880275
title: Additional file 2 of Parkinsonism and dysautonomia with anti-CV2/CRMP5 associated paraneoplastic neurological syndromes mimicking multiple system atrophy: a case report

description: Additional file 2: Table 2. Summary of diseases manifested as Parkinsonism and dysautonomia.
DOI: 10.25582/data.2023-01.2721506/2292950
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.19501202
title: Additional file 2 of The global, regional, and national disease burden of breast cancer attributable to low physical activity from 1990 to 2019: an analysis of the Global Burden of Disease Study 2019

description: Additional file 2.
DOI: 10.25582/data.2023-01.2721305/2292951
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721342/2292952
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721189/2292953
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2023-01.2721400/2292954
title: Data for EMSL Project 60066 from January 2023
DOI: 10.6084/m9.figshare.20026114.v1
title: Percutaneous Nephrolithotomy for Staghorn Stones in Patients with Solitary Kidney in Prone Position or in completely Supine Position: a Single-center Experience

description: PurposeTo evaluate the effectivity and safety of percutaneous nephrolithotomy (PCNL) in the treatment of solitary kidney with staghorn stones in prone position or in completely supine position.Materials and methodsWe retrospectively reviewed the records of 18 patients with staghorn stones in a solitary kidney treated with PCNL. 12 patients underwent PCNL in prone position (group A). 6 patients underwent PCNL in completely supine position (group B). Demographic data, number of accesses, operating time, stone free rate, hemoglobin values, hospital stay and complications were studied. Serum creatinine, systolic and diastolic blood pressure, and new onset hypertension were determined preoperatively and postoperatively at 3 months.ResultsNo blood transfusions were required and no abdominal or thoracic organ injuries were reported in both groups. The mean operative time was 104 minutes (range:72-145 minutes) and 128 minutes (range:80-170 minutes), respectively. The I stage stone free rate was 91.7% and 83.3%, respectively. There was no new onset hypertension by the end of follow-up in both groups. Both groups showed a similar fall in serum creatinine at 3 month follow-up period (p = 0.004 and 0.029, respectively). Systolic blood pressure showed a statistically significant improvement in group B (p = 0.034).ConclusionPCNL is safe and has an acceptably high stone free rate in patients with solitary kidneys in both prone and completely supine position. At short-term follow-up, systolic blood pressure had improved in PCNL in supine position.
DOI: 10.25582/data.2023-01.2721618/2292955
title: Data for EMSL Project 60066 from January 2023
DOI: 10.25582/data.2024-01.3014494/2292956
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3015742/2292957
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3015754/2292958
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014841/2292959
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014923/2292960
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.15831776.v1
title: MicroRNA-624-mediated ARRDC3/YAP/HIF1α axis enhances esophageal squamous cell carcinoma cell resistance to cisplatin and paclitaxel

description: Development of chemoresistance remains a major challenge in treating patients suffering from esophageal squamous cell carcinoma (ESCC), despite treatment advances. MicroRNAs (miRNAs) have been shown to play critical roles in the regulation of ESCC cell chemoresistance. Here, we aimed to investigate the role of miR-624 in ESCC and its molecular mechanism in mediating the resistance of ESCC cells to two common chemotherapeutic drugs, cisplatin (CIS) and paclitaxel (PT). Expression patterns of miR-624, arrestin domain-containing 3 (ARRDC3), Yes-associated protein (YAP), and hypoxia-inducible factor-1α (HIF1α) in ESCC tissues and cell lines were identified using RT-qPCR and Western blot analysis. The binding affinities with the miR-624/ARRDC3/YAP/HIF1α axis were characterized. The chemotherapy-sensitive cell line KYSE150 and chemotherapy-resistant cell line KYSE410 were transfected with an overexpression plasmid or shRNA to study the effect of miR-624/ARRDC3/YAP/HIF1α axis on ESCC cell resistance to CIS and PT. Their <i>in vivo</i> effects on resistance to PT were assessed in tumor-bearing nude mice. High expression of miR-624, YAP and HIF1α, and low expression of ARRDC3 were observed in ESCC tissues and cell lines. miR-624 presented with higher expression in KYSE410 than in KYSE150 cells. miR-624 downregulated ARRDC3 to increase YAP and HIF1α expression so as to enhance ESCC cell resistance to CIS and PT <i>in vitro</i> and <i>in vivo</i>. Taken together, these data indicate an important role for miR-624 in promoting the chemoresistance of ESCC cells, highlighting a potential strategy to overcome drug resistance in ESCC treatment. miR-624 targets ARRDC3 to inhibit its expression, and consequently upregulates YAP expression by inhibiting degradation of YAP. By this mechanism, HIF1α expression is upregulated and the HIF1α signaling pathway is activated. ESCC cell chemotherapy resistance is eventually increased.
DOI: 10.25582/data.2024-01.3014398/2292961
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.16880275.v1
title: Additional file 2 of Parkinsonism and dysautonomia with anti-CV2/CRMP5 associated paraneoplastic neurological syndromes mimicking multiple system atrophy: a case report

description: Additional file 2: Table 2. Summary of diseases manifested as Parkinsonism and dysautonomia.
DOI: 10.25582/data.2024-01.3014411/2292962
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014304/2292963
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25386/genetics.12161718
title: Supplemental Material for Zhou et al., 2020

description: Figure S1 contains verification of related deletion strains and
complementary strain.Figure S2 contains verification of related GFP-labeling strains.Figure S3 contains the phenotypes of <i>paxB</i> and <i>acnA </i>deletion strains.Figure S4 contains the localization of α-actinin and PaxB.Figure S5 contains the
detection of the mRNA expression levels of <i>acnA </i>and <i>paxB.</i>Figure S6 contains Co-IP assay for α-actinin and PaxB.Figure S7 contains bioinformatic analysis of the potential
interacting proteins of α-actinin
AcnA, PaxB and Actin ActA.<i></i><sub></sub><sup></sup><b></b><br>Table S1 contains GFP-α-actinin pulled-down protein list. Table S2 contains PaxB-Flag pulled-down protein list. Table S3 contains putative common-shared interacted proteins by α-actinin and PaxB.
DOI: 10.6084/m9.figshare.20026114
title: Percutaneous Nephrolithotomy for Staghorn Stones in Patients with Solitary Kidney in Prone Position or in completely Supine Position: a Single-center Experience

description: PurposeTo evaluate the effectivity and safety of percutaneous nephrolithotomy (PCNL) in the treatment of solitary kidney with staghorn stones in prone position or in completely supine position.Materials and methodsWe retrospectively reviewed the records of 18 patients with staghorn stones in a solitary kidney treated with PCNL. 12 patients underwent PCNL in prone position (group A). 6 patients underwent PCNL in completely supine position (group B). Demographic data, number of accesses, operating time, stone free rate, hemoglobin values, hospital stay and complications were studied. Serum creatinine, systolic and diastolic blood pressure, and new onset hypertension were determined preoperatively and postoperatively at 3 months.ResultsNo blood transfusions were required and no abdominal or thoracic organ injuries were reported in both groups. The mean operative time was 104 minutes (range:72-145 minutes) and 128 minutes (range:80-170 minutes), respectively. The I stage stone free rate was 91.7% and 83.3%, respectively. There was no new onset hypertension by the end of follow-up in both groups. Both groups showed a similar fall in serum creatinine at 3 month follow-up period (p = 0.004 and 0.029, respectively). Systolic blood pressure showed a statistically significant improvement in group B (p = 0.034).ConclusionPCNL is safe and has an acceptably high stone free rate in patients with solitary kidneys in both prone and completely supine position. At short-term follow-up, systolic blood pressure had improved in PCNL in supine position.
DOI: 10.25582/data.2024-01.3015767/2292964
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.20026133
title: Model illustrations code from Religious celibacy brings inclusive fitness benefits

description: Wolfram Mathematica notebook with code to generate model illustrations
DOI: 10.25582/data.2024-01.3014245/2292965
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.20026136
title: Figures code from Religious celibacy brings inclusive fitness benefits

description: R code used to generate the figures
DOI: 10.25582/data.2024-01.3015753/2292966
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.12161772.v1
title: Population genetics and forensic efficiency of 30 InDel markers in four Chinese ethnic groups residing in Sichuan

description: Sichuan Province is located at the transitional junction regions of the Qinghai-Tibet Plateau and the low-altitude plains. It also serves as the corridor of Sino-Tibetan-speaking population migration and expansion since neolithic expansion of Proto-Tibeto-Burman populations from Middle/Upper Yellow River during Majiayao period (3300–2000 BC). However, the population structure and the corresponding genetic diversity of forensic-related markers in this region remain unclear. Thus, we genotyped 30 insertion-deletion (InDel) markers in 444 samples from four ethnic groups (Han, Tibetan, Hui and Yi) from Sichuan Province using the Investigator<sup>®</sup> DIPplex kit to explore the characteristics of population genetics and forensic genetic focuses. All the loci were found to be in Hardy-Weinberg Equilibrium (HWE) after applying a Bonferroni correction and no pairwise loci showed prominent linkage disequilibrium. The combined matching probability (CMP) and the combined power of discrimination (CPD) are larger than 1.8089 × 10<sup>−11</sup> and 0.99999999995, respectively. Principal component analysis, multi-dimensional scaling plots and Neighbour-Joining tree among 65 worldwide populations indicated that Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations, and Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations. The model-based genetic structure further supports the genetic affinity between the studied populations and linguistically close populations.Key PointsForensic parameters of 30 insertion-deletions (InDels) in 444 individuals from four populations are reported, which showed abundant genetic affinity and diversity among populations and high value in personal identification.Genetic similarities existed between the studied populations and ethnically, linguistically close populations.Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations.Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations. Forensic parameters of 30 insertion-deletions (InDels) in 444 individuals from four populations are reported, which showed abundant genetic affinity and diversity among populations and high value in personal identification. Genetic similarities existed between the studied populations and ethnically, linguistically close populations. Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations. Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations.
DOI: 10.6084/m9.figshare.7967570.v1
title: Additional file 1 of Relation path feature embedding based convolutional neural network method for drug discovery

description: The 1714 drug-target-disease cases which are extracted from Therapeutic Target Database(TTD) as true cases for constructing training data. (TXT 87 kb)
DOI: 10.25582/data.2024-01.3015773/2292967
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.20026162.v1
title: Improved model for the establishment and evaluation of detrusor overactivity in female Wistar rats

description: Objective To improve the model for establishment and evaluation of detrusor overactivity in female Wistar rats. Materials and Methods We ligated the perineal urethra of female Wistar rats and then performed filling cystometry. The probability of detrusor overactivity, bladder capacity, peak voiding pressure and histological changes were investigated. Results Detrusor overactivity ratio of the obstruction group was 32.4%. Bladder capacity increased from 0.273 ± 0.036mL in control group to 0.89 ± 0.19mL in detrusor overactivity group (P &lt; 0.001), and peak voiding pressure increased from 45.9 ± 4.1 cm.H2O to 63.5 ± 17.4cm.H2O (P = 0.007). For obstruction group, compared to no detrusor overactivity rats, detrusor overactivity rats had higher bladder capacity (0.89 ± 0.19mL versus 0.43 ± 0.09mL, P &lt; 0.001) and higher peak voiding pressure (63.5 ± 17.4cm.H2O versus 44.8 ± 6.2cm.H2O, P = 0.005). Detrusor overactivity rats were classified according to peak voiding pressure (49.2 ± 4.2cm.H2O versus 80.8 ± 7.1cm.H2O, P &lt; 0.001). Moreover, bladder weight increased significantly in detrusor overactivity rats (P = 0.003, P = 0.028) and detrusor histological hypertrophy was observed. Conclusions Ligating perineal urethra and filling cystometry with intra-urethral cannula approach is a simple and easily reproducible method to establish and evaluate the model of detrusor overactivity in rats.
DOI: 10.6084/m9.figshare.7445669
title: Tree, log and xml files for the Birth-Death calibrated tree (Figure 1 and Figure S8 [A]) in Cole et al. (2019).

description: This file contains the tree, log and xml files for the calibrated penguin phylogeny (Figure 1 and Fig S8 [A]) in Cole et al. (2019).
DOI: 10.25582/data.2024-01.3015839/2292968
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.20026130.v1
title: Statistical analyses code from Religious celibacy brings inclusive fitness benefits

description: R code used for the statistical analyses
DOI: 10.25582/data.2024-01.3015752/2292969
title: Data for EMSL Project 60938 from January 2024
DOI: 10.6084/m9.figshare.12161772
title: Population genetics and forensic efficiency of 30 InDel markers in four Chinese ethnic groups residing in Sichuan

description: Sichuan Province is located at the transitional junction regions of the Qinghai-Tibet Plateau and the low-altitude plains. It also serves as the corridor of Sino-Tibetan-speaking population migration and expansion since neolithic expansion of Proto-Tibeto-Burman populations from Middle/Upper Yellow River during Majiayao period (3300–2000 BC). However, the population structure and the corresponding genetic diversity of forensic-related markers in this region remain unclear. Thus, we genotyped 30 insertion-deletion (InDel) markers in 444 samples from four ethnic groups (Han, Tibetan, Hui and Yi) from Sichuan Province using the Investigator<sup>®</sup> DIPplex kit to explore the characteristics of population genetics and forensic genetic focuses. All the loci were found to be in Hardy-Weinberg Equilibrium (HWE) after applying a Bonferroni correction and no pairwise loci showed prominent linkage disequilibrium. The combined matching probability (CMP) and the combined power of discrimination (CPD) are larger than 1.8089 × 10<sup>−11</sup> and 0.99999999995, respectively. Principal component analysis, multi-dimensional scaling plots and Neighbour-Joining tree among 65 worldwide populations indicated that Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations, and Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations. The model-based genetic structure further supports the genetic affinity between the studied populations and linguistically close populations.Key PointsForensic parameters of 30 insertion-deletions (InDels) in 444 individuals from four populations are reported, which showed abundant genetic affinity and diversity among populations and high value in personal identification.Genetic similarities existed between the studied populations and ethnically, linguistically close populations.Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations.Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations. Forensic parameters of 30 insertion-deletions (InDels) in 444 individuals from four populations are reported, which showed abundant genetic affinity and diversity among populations and high value in personal identification. Genetic similarities existed between the studied populations and ethnically, linguistically close populations. Sichuan Hui and Han are genetically close to Hmong-Mien and Tai-Kadai-speaking populations. Sichuan Tibetan and Yi bear a strong genetic affinity with Tibeto-Burman-speaking populations.
DOI: 10.6084/m9.figshare.20026130
title: Statistical analyses code from Religious celibacy brings inclusive fitness benefits

description: R code used for the statistical analyses
DOI: 10.6084/m9.figshare.20026133.v1
title: Model illustrations code from Religious celibacy brings inclusive fitness benefits

description: Wolfram Mathematica notebook with code to generate model illustrations
DOI: 10.25582/data.2024-01.3014716/2292970
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014279/2292971
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014902/2292972
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014799/2292973
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014493/2292974
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3015771/2292975
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3015762/2292976
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2024-01.3014565/2292977
title: Data for EMSL Project 60938 from January 2024
DOI: 10.25582/data.2023-02.2730644/2292978
title: Data for EMSL Project 51241 from February 2023
DOI: 10.25582/data.2023-02.2730651/2292979
title: Data for EMSL Project 51241 from February 2023
DOI: 10.25582/data.2023-02.2730615/2292980
title: Data for EMSL Project 51241 from February 2023
DOI: 10.6084/m9.figshare.7445720
title: Tree, Log and xml files for Fig. S9 from Cole et al. (2019).

description: This file contains the tree, log and xml files for the calibrated penguin phylogenies (Figure S9) in Cole et al. (2019).
DOI: 10.6084/m9.figshare.7445738
title: Fasta files

description: This file contains .Fasta files for four mitochondrial genome sequences that had &lt;85% coverage (all <i>Eudyptes warhami</i> and one <i>Megadyptes antipodes richdalei</i> sample from the Chatham Islands an aligned and untrimmed .fasta file of all mitochondrial genome sequences obtained, and a partitioned alignment of the mitochondrial genomes (with a reference sequence).