cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14515702
title: RayGal chains PBJ - fixed As

description: Chains from the analysis of the RayGal simulations for wCDM, nDGP cosmologies with fixed As

kmax = [0.16, 0.18, 0.20, 0.22, 0.24]

redshifts = [1.0]

observables = [P0, P2]

sampled parameters = [b1,  c2, omega_c, omega_b, h,  ns] + w0, logOmega_rc

analytically marginalised parameters = [bG3, c0, c2, aP, e0k2, e2k2]

nDGP chains are run on the LCDM simulation
DOI: 10.5281/zenodo.14515703
title: RayGal chains PBJ - fixed As

description: Chains from the analysis of the RayGal simulations for wCDM, nDGP cosmologies with fixed As

kmax = [0.16, 0.18, 0.20, 0.22, 0.24]

redshifts = [1.0]

observables = [P0, P2]

sampled parameters = [b1,  c2, omega_c, omega_b, h,  ns] + w0, logOmega_rc

analytically marginalised parameters = [bG3, c0, c2, aP, e0k2, e2k2]

nDGP chains are run on the LCDM simulation
DOI: 10.48557/sgltvt
title: Replication Data for: How accurately can we estimate spontaneous body kinematics from video recordings? Effect of movement amplitude on OpenPose accuracy

description: These data support the study "How accurately can we estimate body kinematics from video recordings? Effect of movement amplitude on OpenPose accuracy". We analyzed a dataset comprising 46 human participants exhibiting spontaneous movements of varying amplitude. The dataset consists of raw body kinematics.
DOI: 10.15468/dmggqw
title: Herbier Drummond (mousses d'Ecosse, TL 145)

description: Musci Scotti on dried specimen of the mosses that have been discovered in Scotland with reference to their localities by Thomas Drummond, Forfar. TYPES : Grimmia unicolor Hook. & Orthotrichum drummondii Hook.
Musci Scotti sur un spécimen séché de mousses découvertes en Écosse en référence à leurs localités par Thomas Drummond, Forfar. TYPES : Crochet unicolor Grimmia. & Orthotrichum drummondii Crochet.
DOI: 10.6084/m9.figshare.c.3827635_d3.v1
title: Additional file 3: of Rapid diversification of homothorax expression patterns after gene duplication in spiders

description: Alignment of metazoan hth-related nucleotide sequences used in the phylogenetic sequence analysis in Nexus format. (NEX 63Â kb)
DOI: 10.6084/m9.figshare.c.3827635_d2
title: Additional file 2: of Rapid diversification of homothorax expression patterns after gene duplication in spiders

description: Alignment of metazoan hth-related protein sequences used in the phylogenetic sequence analysis in Nexus format. (NEX 25Â kb)
DOI: 10.6084/m9.figshare.c.3827635_d3
title: Additional file 3: of Rapid diversification of homothorax expression patterns after gene duplication in spiders

description: Alignment of metazoan hth-related nucleotide sequences used in the phylogenetic sequence analysis in Nexus format. (NEX 63Â kb)
DOI: 10.6084/m9.figshare.c.3829018_d8.v1
title: Additional file 17: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: P. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb)
DOI: 10.6084/m9.figshare.c.3829018_d8
title: Additional file 17: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: P. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 109Â kb)
DOI: 10.6084/m9.figshare.c.3829018_d9.v1
title: Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb)
DOI: 10.6084/m9.figshare.c.3829018_d10.v1
title: Additional file 19: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: R. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 128Â kb)
DOI: 10.6084/m9.figshare.c.3829018_d9
title: Additional file 18: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: Q. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 126Â kb)
DOI: 10.5281/zenodo.6670055
title: Datasets for: Generalizing Monin-Obukhov Similarity Theory (1954) for Complex Atmospheric Turbulence, Stiperski and Calaf 2023, PRL

description: Scaling variables for the generalized flux-variance scaling relations that include turbulence anisotropy. Dataset is a companion to the manuscript  Stiperski, I., Calaf, M., 2023: Generalizing Monin-Obukhov similarity theory (1954) for complex atmospheric turbulence. Physical Review Letters, 130 (12), 124001,   https://doi.org/10.1103/PhysRevLett.130.124001

The dataset contains the turbulence statistics from 13 datasets:  AHATS, Cabauw, CASES-99, METCRAX II campaign (NEAR  and RIM towers), T-Rex campaign (Central tower - TRexC, West tower - TRexW) and i-Box measurement network (CCS-VF0 tower - i-Box0, CS-SF1 tower - i-Box1, CS-NF10 tower - i-Box10, CS-NF27 tower - i-Box27, CS-MT21 tower - i-BoxTop, im Hinteren Eis tower - imHint).

Data are organized in csv files for each datasets and only contain high quality (for applied criteria see the Supplemental Material of the companion paper, https://journals.aps.org/prl/supplemental/10.1103/PhysRevLett.130.124001) data with 30 min averaging for unstable stratification and 1 min for stable stratification. Since the data were used for scaling, there is no reference to time, but the measurement height is provided as an additional variable. 

Meaning of variables:

zeta - z/L where z is height above ground and L is the local Obukhov length

SigmaU - $\overline{u'u'}/u_*$ scaled standard deviation of streamwise velocity, where $u_*$ is the local friction velocity

SigmaU - $\overline{v'v'}/u_*$ scaled standard deviation of spanwise velocity

SigmaU - $\overline{v'v'}/u_*$ scaled standard deviation of surface-normal velocity

SigmaT - $\overline{T'T'}/T_*$ scaled standard deviation of sonic temperature, where $T_*$ is the local temperature scale

SigmaEpsU - scaled dissipation rate of the streamwise velocity

SigmaEpsW - scaled dissipation rate of the surface-normal velocity
DOI: 10.5281/zenodo.6670056
title: Datasets for: Generalizing Monin-Obukhov Similarity Theory (1954) for Complex Atmospheric Turbulence, Stiperski and Calaf 2023, PRL

description: Scaling variables for the generalized flux-variance scaling relations that include turbulence anisotropy. Dataset is a companion to the manuscript  Stiperski, I., Calaf, M., 2023: Generalizing Monin-Obukhov similarity theory (1954) for complex atmospheric turbulence. Physical Review Letters, 130 (12), 124001,   https://doi.org/10.1103/PhysRevLett.130.124001

The dataset contains the turbulence statistics from 13 datasets:  AHATS, Cabauw, CASES-99, METCRAX II campaign (NEAR  and RIM towers), T-Rex campaign (Central tower - TRexC, West tower - TRexW) and i-Box measurement network (CCS-VF0 tower - i-Box0, CS-SF1 tower - i-Box1, CS-NF10 tower - i-Box10, CS-NF27 tower - i-Box27, CS-MT21 tower - i-BoxTop, im Hinteren Eis tower - imHint).

Data are organized in csv files for each datasets and only contain high quality (for applied criteria see the Supplemental Material of the companion paper, https://journals.aps.org/prl/supplemental/10.1103/PhysRevLett.130.124001) data with 30 min averaging for unstable stratification and 1 min for stable stratification. Since the data were used for scaling, there is no reference to time, but the measurement height is provided as an additional variable. 

Meaning of variables:

zeta - z/L where z is height above ground and L is the local Obukhov length

SigmaU - $\overline{u'u'}/u_*$ scaled standard deviation of streamwise velocity, where $u_*$ is the local friction velocity

SigmaU - $\overline{v'v'}/u_*$ scaled standard deviation of spanwise velocity

SigmaU - $\overline{v'v'}/u_*$ scaled standard deviation of surface-normal velocity

SigmaT - $\overline{T'T'}/T_*$ scaled standard deviation of sonic temperature, where $T_*$ is the local temperature scale

SigmaEpsU - scaled dissipation rate of the streamwise velocity

SigmaEpsW - scaled dissipation rate of the surface-normal velocity
DOI: 10.6084/m9.figshare.c.3829018_d10
title: Additional file 19: of The human jejunum has an endogenous microbiota that differs from those in the oral cavity and colon

description: R. Illumina abundance summary file. Distribution of microbiota from raw Illumina file. (CSV 128Â kb)
DOI: 10.6084/m9.figshare.28054091
title: Dataset of a three-tier framework 'Supply Warehouse - Urban Distribution Center - Temporary Distribution Station'

description: Since the problem of two-echelon two-mode distribution optimization synchronized with drones within an emergency logistics network is a new one and there is no widely accepted baseline data suitable for our problem, we perform computational experiments on a variety of randomly generated instances with a variety of problem sizes. We generated a total of 50 examples, all of which contained three supply warehouses, four urban distribution centers, and each of which contained 20, 30, 40, 60, and 80 temporary distribution stations.
DOI: 10.6084/m9.figshare.28054091.v1
title: Dataset of a three-tier framework 'Supply Warehouse - Urban Distribution Center - Temporary Distribution Station'

description: Since the problem of two-echelon two-mode distribution optimization synchronized with drones within an emergency logistics network is a new one and there is no widely accepted baseline data suitable for our problem, we perform computational experiments on a variety of randomly generated instances with a variety of problem sizes. We generated a total of 50 examples, all of which contained three supply warehouses, four urban distribution centers, and each of which contained 20, 30, 40, 60, and 80 temporary distribution stations.
DOI: 10.15468/dl.nrzxa5
title: Occurrence Download

description: A dataset containing 3269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma texanum (Matthes, 1855))"
 ]
}

 The dataset includes 3269 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039444-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14515692
title: Detrital zircon U-Pb and Hf isotope data from metasandstones of the Lykhmanivka structure of the Middle Dnieper Domain of the Ukrainian Shield

description: Supplementary data table: Detrital zircon U-Pb and Hf isotope data from metasandstones of the Lykhmanivka structure of the Middle Dnieper Domain of the Ukrainian Shield
DOI: 10.5281/zenodo.14515693
title: Detrital zircon U-Pb and Hf isotope data from metasandstones of the Lykhmanivka structure of the Middle Dnieper Domain of the Ukrainian Shield

description: Supplementary data table: Detrital zircon U-Pb and Hf isotope data from metasandstones of the Lykhmanivka structure of the Middle Dnieper Domain of the Ukrainian Shield
DOI: 10.6084/m9.figshare.c.3829147_d4
title: Additional file 4: of COGNATE: comparative gene annotation characterizer

description: The COGNATE package. This archive file contains the COGNATE package, including Perl scripts, Additional file 1: Parameter table, Readme, example data and output, and the GAL library.Â (ZIP 566 kb)
DOI: 10.6084/m9.figshare.c.3830014_d1.v1
title: Additional file 1: of Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

description: DMPs and MS. List of DMPs associated with MS in CD4s. (CSV 44.8 kb)
DOI: 10.6084/m9.figshare.c.3830014_d1
title: Additional file 1: of Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

description: DMPs and MS. List of DMPs associated with MS in CD4s. (CSV 44.8 kb)
DOI: 10.6084/m9.figshare.c.3830017_d1
title: Additional file 1: of Effects of the EQUIP quasi-experimental study testing a collaborative quality improvement approach for maternal and newborn health care in Tanzania and Uganda

description: Webannex I EQUIP Maps. Webannex II EQUIP mentoring and coaching. Webannex III EQUIP Timeline of assessment and implementation. Webannex IV Project charter. Webannex V EQUIP Example report card. Webannex VI Vignettes. Webannex VII EQUIP Example Runchart. Webannex VIII EQUIP Example Analysis. (ZIP 1064.96 kb)
DOI: 10.5281/zenodo.14062276
title: Larval instar-dependent hemocytes in specialist herbivore Cydalima perspectalis fed on Buxus hyrcana and Buxus microphylla

description: The differential interfere contrast (DIC) and light microscopy were used to determine the total (THC) and differential hemocyte count (DHC) in third and sixth instar larvae of Cydalima perspectalis Walker on two boxwood species (Buxus hyrcana and Buxus microphylla). A Neubauer hemocytometer (HBG, Germany) was utilized for THC. The larval hemolymph samples (20 μl) were immediately mixed with 60 μl of anticoagulant solution (0.041 M Citric acid, 0.017 M EDTA, 0.186 M NaCl, 0.098 M NaOH, and pH 4.5) (Amaral et al., 2010). Assays were carried out on larval hemolymph samples individually collected from five larvae (third and sixth instar larvae as replicates) reared on two boxwood species (as treatments). For differential hemocyte counts (DHC), the larvae were submerged in hot distilled water (60°C) for 5 min and then dried with blotting paper. Their hemolymph (20 μl) was collected through a capillary tube from the metathoracic legs of third and sixth instar larvae (< 48 h post ecdysis) fed on two boxwood leaves. According to Gupta (1979), the cell shape, cytoplasmic ratio, cytoplasmic inclusions, and nucleus shape were used for hemocyte identification. The morphometric sizes (length and width) of hemocytes in the third and sixth instar larvae on two boxwood species were determined. In addition, data from total hemocyte (THC) and different hemocyte count (DHC) of two different larval instars fed on the same boxwood species were analyzed using t-test at p < 0.05. Furthermore, total (THC) and different hemocyte counts (DHC) of the same larval instars fed on two boxwood species (B. hyrcana and B. microphylla) were also compared using t-test.
DOI: 10.5281/zenodo.14062277
title: Larval instar-dependent hemocytes in specialist herbivore Cydalima perspectalis fed on Buxus hyrcana and Buxus microphylla

description: The differential interfere contrast (DIC) and light microscopy were used to determine the total (THC) and differential hemocyte count (DHC) in third and sixth instar larvae of Cydalima perspectalis Walker on two boxwood species (Buxus hyrcana and Buxus microphylla). A Neubauer hemocytometer (HBG, Germany) was utilized for THC. The larval hemolymph samples (20 μl) were immediately mixed with 60 μl of anticoagulant solution (0.041 M Citric acid, 0.017 M EDTA, 0.186 M NaCl, 0.098 M NaOH, and pH 4.5) (Amaral et al., 2010). Assays were carried out on larval hemolymph samples individually collected from five larvae (third and sixth instar larvae as replicates) reared on two boxwood species (as treatments). For differential hemocyte counts (DHC), the larvae were submerged in hot distilled water (60°C) for 5 min and then dried with blotting paper. Their hemolymph (20 μl) was collected through a capillary tube from the metathoracic legs of third and sixth instar larvae (< 48 h post ecdysis) fed on two boxwood leaves. According to Gupta (1979), the cell shape, cytoplasmic ratio, cytoplasmic inclusions, and nucleus shape were used for hemocyte identification. The morphometric sizes (length and width) of hemocytes in the third and sixth instar larvae on two boxwood species were determined. In addition, data from total hemocyte (THC) and different hemocyte count (DHC) of two different larval instars fed on the same boxwood species were analyzed using t-test at p < 0.05. Furthermore, total (THC) and different hemocyte counts (DHC) of the same larval instars fed on two boxwood species (B. hyrcana and B. microphylla) were also compared using t-test.
DOI: 10.15468/dl.umbr3y
title: Occurrence Download

description: A dataset containing 1921 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax porosus (Cope, 1868)"
 ]
}

 The dataset includes 1921 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039445-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14515780
title: Complementary chains PBJ - fixed As

description: Chains from the analysis of the Complementary simulations for wCDM, nDGP cosmologies with fixed As

kmax = [0.16, 0.18, 0.20, 0.22, 0.24]

redshifts = [1.0, 1.2, 1.4, 1.65]

observables = [P0, P2]

sampled parameters = [b1,  c2,  omega_c, omega_b, h,  ns] + w0, logOmega_rc

analytically marginalised parameters = [bG3, c0, c2, aP, e0k2, e2k2]

nDGP chains are run on the LCDM simulation
DOI: 10.5281/zenodo.14515781
title: Complementary chains PBJ - fixed As

description: Chains from the analysis of the Complementary simulations for wCDM, nDGP cosmologies with fixed As

kmax = [0.16, 0.18, 0.20, 0.22, 0.24]

redshifts = [1.0, 1.2, 1.4, 1.65]

observables = [P0, P2]

sampled parameters = [b1,  c2,  omega_c, omega_b, h,  ns] + w0, logOmega_rc

analytically marginalised parameters = [bG3, c0, c2, aP, e0k2, e2k2]

nDGP chains are run on the LCDM simulation
DOI: 10.6084/m9.figshare.c.3832351_d2.v1
title: Additional file 2: Table S1. of CLOVE: classification of genomic fusions into structural variation events

description: Description of data: Detailed results of simulated data analysis. The spreadsheet shows runs of the tested structural variant tools as well as CLOVE re-classified results by variant type and for the individual runs of simulated data. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.c.3832351_d2
title: Additional file 2: Table S1. of CLOVE: classification of genomic fusions into structural variation events

description: Description of data: Detailed results of simulated data analysis. The spreadsheet shows runs of the tested structural variant tools as well as CLOVE re-classified results by variant type and for the individual runs of simulated data. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.c.3832348_d2.v1
title: MOESM2 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 2. http://rnomics.med.usherbrooke.ca/palace?purl=data/related/1811 . Array-96--RBM10 Knockdowns in MCF-7, MDA-MB-231, SKOV-3, OVCAR-3 and PC-3.
DOI: 10.6084/m9.figshare.c.3832306_d6
title: Additional file 5: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The list of mapped SNPs in 12 linkage groups (LGs). (XLSX 91Â kb)
DOI: 10.6084/m9.figshare.c.3832348_d2
title: MOESM2 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 2. http://rnomics.med.usherbrooke.ca/palace?purl=data/related/1811 . Array-96--RBM10 Knockdowns in MCF-7, MDA-MB-231, SKOV-3, OVCAR-3 and PC-3.
DOI: 10.6084/m9.figshare.c.3832354_d1
title: Additional file 1: of The Dark Proteome Database

description: An image file showing the validation tests used to check overall features and a range of individual proteins. (ZIP 1123 kb)
DOI: 10.6084/m9.figshare.c.3832351_d3.v1
title: Additional file 3: of CLOVE: classification of genomic fusions into structural variation events

description: Data S1. Description of data: VCF file of variant calls of CLOVE on the NA12878 genome. (VCF 271Â kb)
DOI: 10.6084/m9.figshare.c.3832351_d3
title: Additional file 3: of CLOVE: classification of genomic fusions into structural variation events

description: Data S1. Description of data: VCF file of variant calls of CLOVE on the NA12878 genome. (VCF 271Â kb)
DOI: 10.6084/m9.figshare.c.3832348_d4.v1
title: MOESM4 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 4. http://rnomics.med.usherbrooke.ca/palace?purl=data/related/2493 . Array-191--RBM10 Knockdowns in BJ-TIELF, MCF-7, MDA-MB-231, SKOV-3, and PC-3.
DOI: 10.6084/m9.figshare.c.3832348_d4
title: MOESM4 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 4. http://rnomics.med.usherbrooke.ca/palace?purl=data/related/2493 . Array-191--RBM10 Knockdowns in BJ-TIELF, MCF-7, MDA-MB-231, SKOV-3, and PC-3.
DOI: 10.15468/dl.r695uk
title: Occurrence Download

description: A dataset containing 3269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Ambystoma texanum (Matthes, 1855))"
 ]
}

 The dataset includes 3269 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039446-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833377_d3
title: Additional file 1: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Description of the population based on pedigree information. The description of the populations based on pedigree information is given. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3833383_d4.v1
title: Additional file 4: of Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize

description: Number of enhancer candidates overlapping with TEs in individual TE families. TE Superfamily column states which TE superfamily the TEs belong to, the TE family column provides the TE family IDs, the family members column lists the total number of elements remaining after removing short and intronic TEs (see methods). For V2-IST, Husk and total enhancer candidates, the number of candidates overlapping at least 80% with TEs within a family and the percent of TEs overlapping with enhancer candidates within the particular family are shown. In the p-val column, the p values calculated using the binomial test with Bonferoni correction are given for the total number of enhancer-containing TEs in a given TE family. The cells highlighted in yellow indicate the TE families significantly enriched for enhancer-containing TEs. (XLSX 26 kb)
DOI: 10.15468/dl.jfwrjj
title: Occurrence Download

description: A dataset containing 338447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phocoena phocoena (Linnaeus, 1758)",
 "Year 2001-2024"
 ]
}

 The dataset includes 338447 records from 303 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039439-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833398_d1.v1
title: Additional file 1: of MicroRNA profiling of ovarian granulosa cell tumours reveals novel diagnostic and prognostic markers

description: Clinico-pathological characteristics of GCT tumours included in this study. *Adult-GCT patient samples with unknown FIGO stage information and excluded from recurrence analysis; â  Adult-GCT patient sample with an aggressive clinical progression (progressive disease and tumour recurrence) and excluded from recurrence analysis; aClinical diagnosis based on histopathology; bStaged according to the International Federation of Gynaecology and Obstetrics (FIGO) system. (XLSX 13Â kb)