cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25217900
title: Raw_SPSTS_data.zip

description: Spin-polarized spectroscopic map data of atomic antiwire bound states on Pd monolayerFe tip <br>+0.1TGrid Spectroscopy036.3ds<br>-0.1TGrid Spectroscopy037.3ds<br>Fe tip <br>-0.15TGrid Spectroscopy046.3ds<br>+0.15TGrid Spectroscopy047.3ds
DOI: 10.6084/m9.figshare.25217900.v2
title: Raw_SPSTS_data.zip

description: Spin-polarized spectroscopic map data of atomic antiwire bound states on Pd monolayerFe tip <br>+0.1TGrid Spectroscopy036.3ds<br>-0.1TGrid Spectroscopy037.3ds<br>Fe tip <br>-0.15TGrid Spectroscopy046.3ds<br>+0.15TGrid Spectroscopy047.3ds
DOI: 10.6084/m9.figshare.25217900.v1
title: Raw_SPSTS_data.zip

description: Spin-polarized spectroscopic map data of atomic antiwire bound states on Pd monolayerFe tip <br>+0.1TGrid Spectroscopy036.3ds<br>-0.1TGrid Spectroscopy037.3ds<br>Fe tip <br>-0.15TGrid Spectroscopy046.3ds<br>+0.15TGrid Spectroscopy047.3ds
DOI: 10.6084/m9.figshare.8080658
title: Additional file 5: of Knockdown of HMGA2 regulates the level of autophagy via interactions between MSI2 and Beclin1 to inhibit NF1-associated malignant peripheral nerve sheath tumour growth

description: Table S3. KEGG data. (CSV 82 kb)
DOI: 10.6084/m9.figshare.8080652.v1
title: Additional file 4: of Knockdown of HMGA2 regulates the level of autophagy via interactions between MSI2 and Beclin1 to inhibit NF1-associated malignant peripheral nerve sheath tumour growth

description: Table S2. RNA-Seq data. (XLSX 2536 kb)
DOI: 10.6084/m9.figshare.12799255
title: Additional file 1 of To bloom once or more times: the reblooming mechanisms of Iris germanica revealed by transcriptome profiling

description: Additional file 1: Table S1. The seed setting rates and flowering rates of F1 in spring and autumn. Table S2. Summary of Illumina transcriptome assembly. Table S3. The functional annotations of unigenes against the public databases. Table S4. The three GO functional categories of all the unigenes. Table S5. The annotations of unigenes by KEGG pathway analysis.Table S6. The expression levels and annotations of the DEGs. Table S7. The significantly enriched KEGG pathways of DEGs in OB-T1 vs RB-T1. The pathways were presented according to the number of DEGs in this pathway. Table S8. The significantly enriched KEGG pathways in DEGs in RB-T1 vs RB-T5. The pathways were presented according to the number of DEGs in this pathway. Table S9. The significantly enriched KEGG pathways in DEGs in OB-T1 vs RB-T5. The pathways were presented according to the number of DEGs in this pathway. Table S10. The GO enrichment analysis of DEGs. Table S11. Primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.19090791
title: Additional file 1 of Mendelian randomization highlights significant difference and genetic heterogeneity in clinically diagnosed Alzheimer’s disease GWAS and self-report proxy phenotype GWAX

description: Additional file 1: Supplementary Table 1. 162 independent SNPs that reached genome-wide significance (P &lt; 5×10-8) in the pooled-sex EduYears meta-analysis of the discovery and replication samples (N =405,072). Supplementary Table 2. GWAS summary statistics of 159 educational attainment genetic variants in AD GWAS dataset. Supplementary Table 3. GWAS summary statistics of 147 educational attainment genetic variants in AD GWAX 2018 dataset. Supplementary Table 4. GWAS summary statistics of 159 educational attainment genetic variants in AD GWAX 2021 dataset. Supplementary Table 5. GWAS summary statistics of 147 educational attainment genetic variants in AD GWAS+GWAX 2018 dataset. Supplementary Table 6. GWAS summary statistics of 159 educational attainment genetic variants in AD GWAS+GWAX 2019 dataset. Supplementary Table 7. GWAS summary statistics of 159 educational attainment genetic variants in AD GWAS+GWAX 2021 dataset.
DOI: 10.6084/m9.figshare.12799267.v1
title: Additional file 1 of Phenotypic and molecular marker analysis uncovers the genetic diversity of the grass Stenotaphrum secundatum

description: Additional file 1: Table S1. Phenotypic characteristics of S. secundatum (n = 49). Table S2. Summary of RAD-seq. Table S3. Statistics for raw data (RAD-seq) from the 49 S. secundatum accessions (cultivar). Table S4. Detailed information on polymorphism revealed by 28 SRAP primer pairs. Table S5. Genetic diversity parameters (h and I) of 46 S. secundatum accessions based on SRAP markers. Table S6. Genetic similarity coefficients between 46 S. secundatum accessions based on SRAP data. Table S7. Primer sequences and amplification results of ISSR analysis. Table S8. Genetic diversity parameters (h and I) of 46 S. secundatum accessions based on ISSR markers. Table S9. Genetic similarity coefficients between 46 S. secundatum accessions based on ISSR data. Table S10. Origins of the 49 S. secundatum accessions examined in this study. Table S11. Primer sequences used for SRAP analysis of S. secundatum. Table S12. Primer sequences used for ISSR analysis of S. secundatum.
DOI: 10.6084/m9.figshare.13172562.v1
title: Additional file 5 of LAMP: disease classification derived from layered assessment on modules and pathways in the human gene network

description: Detailed diseases in 2 categories in refined LAMP classification. (a) Information of 15 diseases in CATG-10 and 2 diseases in CATG-16 that stand close at the top left of Fig. 5a. *Denotes that GM2 gangliosidoses appears twice, since the second-level disease classes in KEGG are different. **Denotes that lysosomal cysteine protease deficiencies appears twice, since the first-level disease classes in KEGG are different. (b) Information of 5 diseases in CATG-9 and 12 diseases in CATG-17 overlapping in the top of Fig. 5a. *Denotes that pyruvate dehydrogenase complex deficiency appears twice, since the second-level disease classes in KEGG are different. **Denotes that muscular dystrophy-dystroglycanopathy type B appears twice, since the first-level disease classes in KEGG are different. (c) Information of 3 diseases in CATG-8, 27 diseases in CATG-4 and 12 diseases in CATG-5 that near the main cluster of CATG-5 in the left of Fig. 5a. **Denotes that Atopic dermatitis and Myopathy with lactic acidosis and sideroblastic anaemia appears twice, respectively, since the first-level disease classes in KEGG are different.
DOI: 10.6084/m9.figshare.19090886
title: Additional file 4 of Identification of a ZC3H12D-regulated competing endogenous RNA network for prognosis of lung adenocarcinoma at single-cell level

description: Additional file 4: Supplementary Table 1. lncRNA and mRNA ceRNA network list top.
DOI: 10.6084/m9.figshare.19090920.v1
title: Additional file 4 of Immune effects of PI3K/Akt/HIF-1α-regulated glycolysis in polymorphonuclear neutrophils during sepsis

description: Additional file 4: Table S3. Differentially expressed genes (DEGs) between patients with sepsis and healthy controls. This table presents the results of differential expression between patients with sepsis and healthy controls. In total, 677 DEGs with padj &lt; 0.05 were identified. The following information is reported for each gene: Ensembl Gene Name, Fold Change comparing patients with sepsis versus healthy controls, level of statistical significance (padj, qval), genomic coordinates (chromosome_name, start_position, end_position), official gene symbol (external_gene_name), and normalized gene counts for each biological sample.
DOI: 10.6084/m9.figshare.13172565
title: Additional file 6 of LAMP: disease classification derived from layered assessment on modules and pathways in the human gene network

description: Refined results of 1726 diseases in LAMP classification. Category in refined LAMP classification of each diseases is listed.
DOI: 10.6084/m9.figshare.13849633
title: PRKAA/AMPKα phosphorylation switches the role of RASAL2 from a suppressor to an activator of autophagy

description: RASAL2 (RAS protein activator like 2), a RASGTPase activating protein, can catalyze the hydrolysis of RAS-GTP into RAS-GDP to inactivate the RAS pathway in various types of cancer cells. However, the cellular function of RASAL2 remains elusive. Here we showed that RASAL2 can attenuate PRKAA/AMPKα phosphorylation by recruiting phosphatase PPM1B/pp2cβ, thus inhibiting the initiation of basal autophagy under normal conditions. In addition, we found that glucose starvation could induce dissociation of PPM1B from RASAL2 and then RASAL2 at S351 be phosphorylated by PRKAA, followed by the binding of phosphorylated-RASAL2 with to PIK3C3/VPS34-ATG14-BECN1/Beclin1 complex to increase PIK3C3 activity and autophagy. Furthermore, RASAL2 S351 phosphorylation facilitated breast tumor growth and correlated to poor clinical outcomes in breast cancer patients. Our study demonstrated that the phosphorylation status of RASAL2 S351 can function as a molecular switch to either suppress or promote AMPK-mediated autophagy. Inhibition of RASAL2 S351 phosphorylation might be a potential therapeutic strategy to overcome the resistance of AMPK-activation agents. <b>Abbreviations:</b> AICAR: aminoimidazole carboxamide ribonucleotide; AMPK: adenosine 5‘-monophosphate (AMP)-activated protein kinase; ATG14: autophagy related 14; C.C: compound C; CQ: chloroquine; DKO: double-knockout; MAP1LC3/LC3: microtubule associated protein 1 light chain 3; MTOR: mechanistic target of rapamycin kinase; PIK3C3/VPS34: phosphatidylinositol 3-kinase catalytic subunit type 3; PIK3R4/VPS15: phosphoinositide-3-kinase regulatory subunit 4; PPM1B/pp2cβ: protein phosphatase, Mg2+/Mn2+ dependent 1B; PRKAA/AMPKα: protein kinase AMP-activated catalytic subunit alpha; PtdIns: phosphatidylinositol; PtdIns3P: phosphatidylinositol-3-phosphate; RASAL2: RAS protein activator like 2; RasGAPs: RasGTPase activating proteins; SQSTM1/p62: sequestosome 1; TNBC: triple-negative breast cancer.
DOI: 10.6084/m9.figshare.7033925
title: Additional file 1: of Comprehensive antibiotic-linked mutation assessment by resistance mutation sequencing (RM-seq)

description: Table S1. Primer sequences used for mutation reconstruction and RM-seq. Table S2. Whole genome sequencing and SNP/indel calling of reconstructed rpoB mutants. Table S3. Rifampicin and daptomycin MIC of reconstructed mutants. Table S4. Characteristics of RM-seq sequencing libraries. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.13172565.v1
title: Additional file 6 of LAMP: disease classification derived from layered assessment on modules and pathways in the human gene network

description: Refined results of 1726 diseases in LAMP classification. Category in refined LAMP classification of each diseases is listed.
DOI: 10.6084/m9.figshare.13325414
title: Table S2:The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing major and trace elements of Leiqiong samples
DOI: 10.6084/m9.figshare.13325414.v1
title: Table S2:The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing major and trace elements of Leiqiong samples
DOI: 10.6084/m9.figshare.13325417
title: Table S3: The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing the Sr, Nd, Pb and Hf isotopic data of Leiqiong samples
DOI: 10.6084/m9.figshare.13325417.v1
title: Table S3: The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing the Sr, Nd, Pb and Hf isotopic data of Leiqiong samples
DOI: 10.6084/m9.figshare.13325420
title: Table S1:The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing all published dates for Leiqiong volcanic fields
DOI: 10.6084/m9.figshare.13325420.v1
title: Table S1:The Cenozoic volcanic fields in northern Hainan Island and Leizhou Peninsula, South China: eruption history, magma source and dynamic background

description: Table showing all published dates for Leiqiong volcanic fields
DOI: 10.6084/m9.figshare.13323647
title: Additional file 3 of HDAC2 inhibits EMT-mediated cancer metastasis by downregulating the long noncoding RNA H19 in colorectal cancer

description: Additional file 3.
DOI: 10.6084/m9.figshare.7034009
title: MOESM3 of Molecular analysis of inherited cardiomyopathy using next generation semiconductor sequencing technologies

description: Additional file 3: Table S2. List of variant annotation information.
DOI: 10.6084/m9.figshare.21185663
title: Additional file 12 of Malignant clonal evolution drives multiple myeloma cellular ecological diversity and microenvironment reprogramming

description: Additional file 12: Supplementary Table 7. Relative abundance estimation and typing of type I and IX malignant progenitors in a large clinical cohort.
DOI: 10.6084/m9.figshare.19090886.v1
title: Additional file 4 of Identification of a ZC3H12D-regulated competing endogenous RNA network for prognosis of lung adenocarcinoma at single-cell level

description: Additional file 4: Supplementary Table 1. lncRNA and mRNA ceRNA network list top.
DOI: 10.6084/m9.figshare.12799465
title: Additional file 3 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 3. Significant interacting fragments called by HiSIF in GM12878 cells Replicate 3–9.
DOI: 10.6084/m9.figshare.12799471
title: Additional file 5 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 5. Significant interacting fragments called by HICCUPS in K562 cells.
DOI: 10.6084/m9.figshare.12799474.v1
title: Additional file 6 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 6. Significant interacting fragments called by Fit-Hi-C in K562 cells.
DOI: 10.6084/m9.figshare.12799477
title: Additional file 7 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 7. Gained promoter-distal loops in MCF7-TamR cells.
DOI: 10.6084/m9.figshare.12799477.v1
title: Additional file 7 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 7. Gained promoter-distal loops in MCF7-TamR cells.
DOI: 10.6084/m9.figshare.12799480.v1
title: Additional file 8 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 8. Up-regulated DEGs with Gained promoter-distal loops in MCF7-TamR cells.
DOI: 10.6084/m9.figshare.19090920
title: Additional file 4 of Immune effects of PI3K/Akt/HIF-1α-regulated glycolysis in polymorphonuclear neutrophils during sepsis

description: Additional file 4: Table S3. Differentially expressed genes (DEGs) between patients with sepsis and healthy controls. This table presents the results of differential expression between patients with sepsis and healthy controls. In total, 677 DEGs with padj &lt; 0.05 were identified. The following information is reported for each gene: Ensembl Gene Name, Fold Change comparing patients with sepsis versus healthy controls, level of statistical significance (padj, qval), genomic coordinates (chromosome_name, start_position, end_position), official gene symbol (external_gene_name), and normalized gene counts for each biological sample.
DOI: 10.6084/m9.figshare.12799449.v1
title: Additional file 6 of Development and evaluation of an up-converting phosphor technology-based lateral flow assay for rapid and quantitative detection of Coxiella burnetii phase I strains

description: Additional file 6: Table S1. The T/C ratios of UPT-LF and the C. burnetii gene copies for organ suspensions of infected mice.
DOI: 10.6084/m9.figshare.12799462
title: Additional file 2 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 2. Significant interacting fragments called by HiSIF in GM12878 cells Replicate 1.
DOI: 10.6084/m9.figshare.19090923
title: Additional file 5 of Immune effects of PI3K/Akt/HIF-1α-regulated glycolysis in polymorphonuclear neutrophils during sepsis

description: Additional file 5: Table S4. KEGG pathway-enriched clusters obtained from the DEGs list corresponding to patients with sepsis. This table is an extended version of Fig. 3C. All 88 significantly enriched KEGG pathways are described.
DOI: 10.6084/m9.figshare.19090923.v1
title: Additional file 5 of Immune effects of PI3K/Akt/HIF-1α-regulated glycolysis in polymorphonuclear neutrophils during sepsis

description: Additional file 5: Table S4. KEGG pathway-enriched clusters obtained from the DEGs list corresponding to patients with sepsis. This table is an extended version of Fig. 3C. All 88 significantly enriched KEGG pathways are described.
DOI: 10.6084/m9.figshare.12799452
title: Additional file 7 of Development and evaluation of an up-converting phosphor technology-based lateral flow assay for rapid and quantitative detection of Coxiella burnetii phase I strains

description: Additional file 7: Table S2. The T/C ratios of UPT-LF and the C. burnetii gene copies for tick samples.
DOI: 10.6084/m9.figshare.12799465.v1
title: Additional file 3 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 3. Significant interacting fragments called by HiSIF in GM12878 cells Replicate 3–9.
DOI: 10.6084/m9.figshare.12799452.v1
title: Additional file 7 of Development and evaluation of an up-converting phosphor technology-based lateral flow assay for rapid and quantitative detection of Coxiella burnetii phase I strains

description: Additional file 7: Table S2. The T/C ratios of UPT-LF and the C. burnetii gene copies for tick samples.
DOI: 10.6084/m9.figshare.12799471.v1
title: Additional file 5 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 5. Significant interacting fragments called by HICCUPS in K562 cells.
DOI: 10.6084/m9.figshare.12799480
title: Additional file 8 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 8. Up-regulated DEGs with Gained promoter-distal loops in MCF7-TamR cells.
DOI: 10.6084/m9.figshare.12799462.v1
title: Additional file 2 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 2. Significant interacting fragments called by HiSIF in GM12878 cells Replicate 1.
DOI: 10.6084/m9.figshare.12799474
title: Additional file 6 of Modeling and analysis of Hi-C data by HiSIF identifies characteristic promoter-distal loops

description: Additional file 6. Significant interacting fragments called by Fit-Hi-C in K562 cells.
DOI: 10.6084/m9.figshare.19091022
title: Additional file 3 of miR-199b-3p contributes to acquired resistance to cetuximab in colorectal cancer by targeting CRIM1 via Wnt/β-catenin signaling

description: Additional file 3: Table S1. The DEGs between CTx resistance and non-CTx resistance groups in the GSE140971 dataset.
DOI: 10.6084/m9.figshare.19091025
title: Additional file 4 of miR-199b-3p contributes to acquired resistance to cetuximab in colorectal cancer by targeting CRIM1 via Wnt/β-catenin signaling

description: Additional file 4: Table S2. The potential targets of miR-199b-3p predicted by Targetscan.
DOI: 10.6084/m9.figshare.13325557
title: Table S3: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing trace element contents of Tengchong volcanic rocks (ppm)
DOI: 10.6084/m9.figshare.13325557.v1
title: Table S3: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing trace element contents of Tengchong volcanic rocks (ppm)
DOI: 10.6084/m9.figshare.13325560
title: Table S1: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing whole rock major element contents of Tengchong volcanic rocks (wt%)
DOI: 10.6084/m9.figshare.13325560.v1
title: Table S1: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing whole rock major element contents of Tengchong volcanic rocks (wt%)
DOI: 10.6084/m9.figshare.13325563
title: Table S4: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing Sr-Nd-Pb isotopes of Tengchong volcanic rocks
DOI: 10.6084/m9.figshare.13325563.v1
title: Table S4: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing Sr-Nd-Pb isotopes of Tengchong volcanic rocks
DOI: 10.6084/m9.figshare.13325566
title: Table S2: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing rare earth element (REE) contents of Tengchong volcanic rocks (ppm)
DOI: 10.6084/m9.figshare.13325566.v1
title: Table S2: Eruption history, petrogeochemistry, and geodynamic background of Tengchong volcanoes in Yunnan Province, SW China

description: Table showing rare earth element (REE) contents of Tengchong volcanic rocks (ppm)
DOI: 10.6084/m9.figshare.13325568
title: Table S1:Volcanic geology and petrochemistry of Ashikule volcanic field in western Kunlun mountains of Tibetan plateau

description: Whole rock major element contents of the rocks from the Ashikule volcanic field (wt%)
DOI: 10.6084/m9.figshare.13325568.v1
title: Table S1:Volcanic geology and petrochemistry of Ashikule volcanic field in western Kunlun mountains of Tibetan plateau

description: Whole rock major element contents of the rocks from the Ashikule volcanic field (wt%)
DOI: 10.6084/m9.figshare.13325574
title: Table S1: Olivine chemistry of the Quaternary Datong basalts in the Trans-North China Orogen: Insights into mantle source lithology and redoxâ€“hydration state

description: Table showing standard olivine compositions (29-MG) determined by EPMA in this study
DOI: 10.6084/m9.figshare.13325574.v1
title: Table S1: Olivine chemistry of the Quaternary Datong basalts in the Trans-North China Orogen: Insights into mantle source lithology and redoxâ€“hydration state

description: Table showing standard olivine compositions (29-MG) determined by EPMA in this study
DOI: 10.25413/sun.24972888
title: Ship Motion Measurements and Human Responses Captured on the SA Agulhas II - SANAE 2021-2022

description: This dataset contains digitised human responses related to motion sickness recorded by participants on the SA Agulhas II during the South African National Antarctic Expedition (SANAE) Relief Voyage of 2021-2022 using paper-based questionnaire booklets, called daily diaries, and a mobile application, called Mariner 4.0.Additionally, this dataset contains ship motion measured by accelerometers in a specific array that enables the computation of z-oriented acceleration at points of interest on board beyond the array measurement locations. Acceleration measurements in the dataset are stored in 5-minute batches with a 10 Hz sample rate at the locations and orientations detailed in the associated readme file in the data collection. This dataset is a down-sampled subset of acceleration measurements sampled at 2048 Hz during the SANAE Relief Voyage of 2021-2022.Lastly, this dataset contains Motion Sickness Dose Values computed from ship motion measurements at each near-field communication tag installed shipboard, as detailed by position vectors in the supporting documentation.Note: A Readme file is included to guide dataset navigation and understanding.