cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17795453
title: Reference Set and MLLM Visual Information Extraction Prototype

description: Manually extracted data from figures and tables reported in pharmacology studies previously collected as part of an internal reference set. The dataset contains images from the visual elements and their corresponding values from 45 published pharmacology studies with distinct PubMed IDs. Multiple images could be sampled from each of these papers, and multiple values were often sampled from each image. Therefore, the reference set contains multiple rows with values from images of tables or from figures corresponding to graphs, plots, or charts. Dataset contains annotated information from 43 images of figueres and 40 images of tables. The visual elements contain data from any of eight different types of experiments, namely in vitro enzyme inhibition, induction, & kinetics, in vitro transporter inhibition, induction, and kinetics, as well as in vivo enzyme kinetics and in vivo interaction studies. The selected sample represents a wide range of styles, layouts, and structures for both figures and tables.

 

We also provide code from our MLLLMs Visual Information Extraction prototype using the Pydantic AI v1.25 Python module to connect with multiple models to perform VIE and produce a structured JSON output. Our pilot VIE system was used to process images from the reference set along with the rest of the annotated information to generate prompts. 

We have evaluated the following models.








Inference Provider



Model Company



Model Name



Context Window



Number of Parameters





AWS Bedrock



Anthropic



Claude Sonnet 3.7



128K



*





Claude Sonnet 4.0



1M



*





AWS



Nova Pro



300K



*





Nova Premier



1M



*





Meta



Llama 3.2



128K



90B





Llama 4 Scout



10M



109B





Llama 4 Maverick



1M



400B





Open AI API



Open AI



GPT-4o



128K



*





GPT-5



400K



*





Google Vertex



Google



Gemini 2.5 Pro



1M



*





*The actual number of parameters for this model has not been made publicly available.
DOI: 10.17605/osf.io/8a3xy
title: Credit Rating in Business and Economics Research: Europe - Dataset (2000-2022)

description: Data studied in a paper entitled "Credit Rating in Business and Economics Research: Europe (2000-2022) " presented at the B&ESI2023 Conference
DOI: 10.17026/ar/8w13cz
title: PAN-00172340 - oracle rod type 1a3

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00172340&lt;/p&gt;
description: Modified: 2025-05-02T16:41:38+02:00
DOI: 10.15468/dl.y8y37a
title: Occurrence Download

description: A dataset containing 117885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -10.914722",
 "DecimalLatitude is less than or equal to -5.914722",
 "DecimalLongitude is greater than or equal to 35.0",
 "DecimalLongitude is less than or equal to 40.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 117885 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023362-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17605/osf.io/d953m
title: Incentivizing free riders improves collective intelligence in social dilemmas

description: The raw files are CSV tables created automatically by Psynet. See analysis for details.
DOI: 10.17605/osf.io/43rdk
title: Segment to understand: Characterization of fashion consumer profiles in Portugal

description: Open dataset and materials associated with the master's dissertation titled as above.
DOI: 10.5066/p9j0pupy
title: A Lithostratigraphic Analysis of the Meteor Crater Ejecta Blanket: Measurements, Assigned Units, and Unit Thickness (ver. 2.0, December 2025)

description: Current models do not sufficiently explain target rock-projectile mixing and ejecta blanket formation for small impact craters (i.e., less than 2km diameter). For example, due to the size of Meteor Crater and the low-velocity at which materials were excavated from the transient crater, the extent of target rock-projectile mixing is expected to be minor. However, based on drilling notes from Dr. David Roddy and preliminary work done at the USGS, we found lithologic mixing is much more prevalent throughout the ejecta blanket. We have used the USGS Meteor Crater sample collection to investigate the internal stratigraphy and spatial distribution of impact-generated materials in the ejecta blanket to better understand cratering processes involving volatile-rich sedimentary target rocks.

Data presented here are the summarized results from our lithostratigraphic analysis of the continuous ejecta blanket at Meteor Crater. 'Lithostratigraphic_analysis_summary' file is our summarized results, which includes an assigned unit for each sample based on the contrasting mixtures of target rocks (from our measurements), and the overall thickness of each identified unit across the selected transects. These data are the supplementary materials associated with a manuscript that will soon be published in a peer-review journal.
DOI: 10.7910/dvn/rj76ng
title: Online Table 7

description: Fresh vs Fixed spectral references
DOI: 10.15785/sbgrid/1228
title: X-Ray Diffraction data from Rv0097 F102A variant in apo state, source of 9PBU structure

description: Native dataset
DOI: 10.15468/dl.auc54r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1890",
 "Year is less than or equal to 1899"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023376-251120083545085/datasets/export for details.
DOI: 10.17026/ar/cbvfst
title: PAN-00037081 - copper alloy nail with a hemispherical head

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00037081&lt;/p&gt;
description: Modified: 2025-07-17T11:34:55+02:00
DOI: 10.7910/dvn/nkheu4
title: Online Figure 1,2 and Online Table 1,2,3

description: Configuration and normalized spectral references
DOI: 10.15468/dl.ah6rek
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 1909"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023379-251120083545085/datasets/export for details.
DOI: 10.15468/dl.gua62a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1910",
 "Year is less than or equal to 1919"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023382-251120083545085/datasets/export for details.
DOI: 10.17605/osf.io/3krcj
title: Helicobacter pylori colonization of the oral cavity: a scoping review

description: A scoping review will be conducted to synthesize the evidence and assess the scope of the literature on the biological mechanisms involved in the persistent and/or transient colonization of the oral cavity by H. pylori. This review will follow the Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) extension for Scoping Reviews (PRISMA-ScR) framework (Tricco et al., 2018).

The primary focus of this review will be to describe the mechanisms of persistent and/or transient colonization of the oral cavity by H. pylori. As a secondary focus, the review will compare and describe the histological and molecular characteristics of the lower gastrointestinal tract and the oral cavity, based on the hypothesis of similarity in various secreted and cell membrane-associated molecules described in these environments. Additionally, the review will describe the microenvironment of the oral cavity, the interactions of H. pylori with the oral microbiota, and the receptors involved in H. pylori colonization, primarily mediated by various adhesins
DOI: 10.15468/dl.tbagk4
title: Occurrence Download

description: A dataset containing 19952 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Arremon assimilis",
 "Year 1975-2025"
 ]
}

 The dataset includes 19952 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023384-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zytc9d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1920",
 "Year is less than or equal to 1929"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023385-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eexr6k
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Carnegia gigantea"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023386-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15785/sbgrid/1224
title: X-Ray Diffraction data from Rv0097 F102W variant in apo state, source of 9PAX structure

description: Native dataset
DOI: 10.7910/dvn/ospldg
title: Replication Data for: Physics potential of the IceCube Upgrade for atmospheric neutrino oscillations

description: Data and plotting scripts for reproducing plots from "Physics potential of the IceCube Upgrade for atmospheric neutrino oscillations". Please refer to the related publication for a detailed explanation of the sample and analysis.
&lt;br&gt;&lt;br&gt;
Contents: 
&lt;ol&gt;
&lt;li&gt; &lt;code&gt;README.md&lt;/code&gt; contains useful information about the contents of this data release.&lt;/li&gt;
&lt;li&gt; &lt;code&gt;example.py&lt;/code&gt; Example script demonstrating how to load the csv files, plot the chi squared map, and extract the 90% sensitivity contours shown in Figures 11 and 15.&lt;/li&gt;
&lt;li&gt; &lt;code&gt;modchi2map_nufitwoSK.csv&lt;/code&gt; chi2 map used to produce Figure 11 (left), in which the injected truth point is the best fit point from &lt;a href="http://www.nu-fit.org/sites/default/files/v52.tbl-parameters.pdf"&gt;NuFit 5.2 w/o SK (upper panel)&lt;/a&gt;, sin&lt;sup&gt;2&lt;/sup&gt;(&theta;&lt;sub&gt;23&lt;/sub&gt;)=0.572 and &Delta;m&lt;sup&gt;2&lt;/sup&gt;&lt;sub&gt;32&lt;/sub&gt;=2.43&times;10&lt;sup&gt;-3&lt;/sup&gt; eV&lt;sup&gt;2&lt;/sup&gt;.&lt;/li&gt;
&lt;li&gt; &lt;code&gt;modchi2map_nufitwSK.csv&lt;/code&gt; chi2 map used to produce Figure 11 (right), in which the injected truth point is the best fit point from &lt;a href="http://www.nu-fit.org/sites/default/files/v52.tbl-parameters.pdf"&gt;NuFit 5.2 w/ SK (lower panel)&lt;/a&gt;, sin&lt;sup&gt;2&lt;/sup&gt;(&theta;&lt;sub&gt;23&lt;/sub&gt;)=0.451 and &Delta;m&lt;sup&gt;2&lt;/sup&gt;&lt;sub&gt;32&lt;/sub&gt;=2.43&times;10&lt;sup&gt;-3&lt;/sup&gt; eV&lt;sup&gt;2&lt;/sup&gt;.&lt;/li&gt;
&lt;li&gt; &lt;code&gt;modchi2map_icecube.csv&lt;/code&gt; chi2 map used to produce Figure 15, in which the injected truth point is the best fit point from the latest published IceCube DeepCore oscillation result &lt;a href="https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.134.091801"&gt;Phys. Rev. Lett. 134, 091801 (2025)&lt;/a&gt;, sin&lt;sup&gt;2&lt;/sup&gt;(&theta;&lt;sub&gt;23&lt;/sub&gt;)=0.54 and &Delta;m&lt;sup&gt;2&lt;/sup&gt;&lt;sub&gt;32&lt;/sub&gt;=2.40&times;10&lt;sup&gt;-3&lt;/sup&gt; eV&lt;sup&gt;2&lt;/sup&gt;.&lt;/li&gt;
&lt;/ol&gt;

Please note: The CSV files are available for download through dataverse in either csv or tab format.
DOI: 10.15468/dl.3tr2rf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hoplostethus atlanticus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1930",
 "Year is less than or equal to 1939"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023389-251120083545085/datasets/export for details.
DOI: 10.15468/dl.uadckk
title: Occurrence Download

description: A dataset containing 11747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cylindropuntia acanthocarpa"
 ]
}

 The dataset includes 11747 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023388-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/lmzgop
title: Planilha das vítimas cujos desaparecimentos estão relacionados ao DOI-Codi/SP

description: The database compiles systematized information on 85 victims associated with the DOI-Codi/SP, drawn entirely from Volume III of the CNV report. It organizes personal data, political trajectories, circumstances of disappearance, and subsequent developments. It standardizes content that was previously dispersed across different sections of the report.
DOI: 10.17632/h354f3j97v.3
title: Redox Imbalance Drives Magnetic Properties and Function Changes in Mice

description: Original data for the article "Redox Imbalance Drives Magnetic Properties and Function Changes in Mice"
DOI: 10.5281/zenodo.17786863
title: Falsarium – förfalskning av handlingar och penningar i Finland 1828–1850
title: Asiakirja- ja rahaväärennökset Suomessa 1828–1850
title: Counterfeit Documents and Money in Finland 1828–1850

description: Databasen Falsarium innehåller uppgifter om brott som berör förfalskning av handlingar och penningar samt personer åtalade för dessa i Finland i början av 1800-talet. Databasen har sammanställts inom forskningsprojektet Förfalskarna vid Åbo universitet (2022–2025). Källmaterialet består av kriminalresolutionerna (serie Dbc) och underställningsakterna (serie Ebd) i underställda ärenden som berör förfalskningar av penningar och handlingar i Åbo hovrätts arkiv 1828–1850. Databasen är publicerad tillsammans med de underställningsakter som har digitaliserats inom projektet.
description: Falsarium-tietokanta sisältää tietoa asiakirja- ja rahaväärennysrikoksista sekä niistä syytetyistä henkilöistä 1800-luvun alun Suomessa. Se on koottu Turun yliopiston Förfalskarna-tutkimushankkeessa (2022–2025). Lähdeaineistona ovat Turun hovioikeuden arkiston raha- ja asiakirjaväärennöksiä käsittelevät alistettujen asioiden päätöstaltiot (sarja Dbc) ja alistusaktit (sarja Ebd) vuosilta 1828–1850. Tietokanta julkaistaan yhdessä hankkeessa digitoitujen alistusaktien kanssa.
description: The Falsarium database contains information on counterfeit documents and money, as well as individuals accused of counterfeiting in 19th-century Finland. It was created as part of the Förfalskarna (Forgers) research project at the University of Turku (2022–2025). The source material of the database consists of file copies (series Dbc Alistettujen asioiden päätöstaltiot) and case files (series Ebd Alistusaktit) concerning money and document forgery cases in the archive of the Turku Court of Appeal, covering the years 1828–1850. The database is published together with the case files that have been digitised in the project.
DOI: 10.5281/zenodo.17786862
title: Falsarium – förfalskning av handlingar och penningar i Finland 1828–1850
title: Asiakirja- ja rahaväärennökset Suomessa 1828–1850
title: Counterfeit Documents and Money in Finland 1828–1850

description: Databasen Falsarium innehåller uppgifter om brott som berör förfalskning av handlingar och penningar samt personer åtalade för dessa i Finland i början av 1800-talet. Databasen har sammanställts inom forskningsprojektet Förfalskarna vid Åbo universitet (2022–2025). Källmaterialet består av kriminalresolutionerna (serie Dbc) och underställningsakterna (serie Ebd) i underställda ärenden som berör förfalskningar av penningar och handlingar i Åbo hovrätts arkiv 1828–1850. Databasen är publicerad tillsammans med de underställningsakter som har digitaliserats inom projektet.
description: Falsarium-tietokanta sisältää tietoa asiakirja- ja rahaväärennysrikoksista sekä niistä syytetyistä henkilöistä 1800-luvun alun Suomessa. Se on koottu Turun yliopiston Förfalskarna-tutkimushankkeessa (2022–2025). Lähdeaineistona ovat Turun hovioikeuden arkiston raha- ja asiakirjaväärennöksiä käsittelevät alistettujen asioiden päätöstaltiot (sarja Dbc) ja alistusaktit (sarja Ebd) vuosilta 1828–1850. Tietokanta julkaistaan yhdessä hankkeessa digitoitujen alistusaktien kanssa.
description: The Falsarium database contains information on counterfeit documents and money, as well as individuals accused of counterfeiting in 19th-century Finland. It was created as part of the Förfalskarna (Forgers) research project at the University of Turku (2022–2025). The source material of the database consists of file copies (series Dbc Alistettujen asioiden päätöstaltiot) and case files (series Ebd Alistusaktit) concerning money and document forgery cases in the archive of the Turku Court of Appeal, covering the years 1828–1850. The database is published together with the case files that have been digitised in the project.
DOI: 10.17632/dbcfr25sxb.4
title: Processing tomato - RDI x Biodegradable mulching film

description: Italy is the third yielding country of processing tomato (Solanum lycopersicum L.) worldwide. However, its production is projected to be considerably affected by climate change effects, especially in drought-prone regions where maximizing water use efficiency is essential. A two-year on-farm experiment was carried out to compare full irrigation (T1) with two water-saving irrigation techniques on processing tomato: T2 (Regulated Deficit Irrigation, RDI) and T3 (RDI combined with black biodegradable mulching film). The experiment was carried out at two representative Southern Italy sites, where yield performance, sustainability, and fruit quality were assessed. T2 resulted in a 31% water saving and maintained comparable yields, increasing the irrigation (+44%) and economic (+56%) water productivities with respect to T1. T3 improved soluble solids content (+4%), marketable (+23%) and brix (+28%) yield, and irrigation (+71%) and economic (+90%) water productivities when compared to T1. Metabolic profiling further highlighted that T3 boosted key stress-related metabolites, including alanine (+50%), glycine (+31%), and proline (+44%) indicating an enhanced metabolic adaptation to water stress. Based on these findings, T3 is recommended as valuable practice for improving yield and sustainability while maintaining fruit quality in drought-prone areas.
DOI: 10.15468/dl.nsmxtm
title: Occurrence Download

description: A dataset containing 33928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Fouquieria splendens"
 ]
}

 The dataset includes 33928 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023390-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3cc5y
title: Occurrence Download

description: A dataset containing 73301 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 73301 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023377-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/arp-0ja-59m
title: Chloroceryle americana mathewsii

description: Digital Specimen for the physical specimen hosted at Natural History Museum of Denmark.
DOI: 10.3535/q0z-d31-ks8
title: Chloroceryle americana americana

description: Digital Specimen for the physical specimen hosted at Natural History Museum of Denmark.
DOI: 10.3535/2wp-rb2-5aa
title: Chloroceryle americana americana

description: Digital Specimen for the physical specimen hosted at Natural History Museum of Denmark.
DOI: 10.3535/l67-r7r-smp
title: Chloroceryle americana mathewsii

description: Digital Specimen for the physical specimen hosted at Natural History Museum of Denmark.
DOI: 10.5281/zenodo.17699038
title: A Turing Test for Artificial Nets devoted to Vision
DOI: 10.5281/zenodo.17700252
title: A Turing Test for Artificial Nets devoted to Vision
DOI: 10.15468/dl.x4m2am
title: Occurrence Download

description: A dataset containing 31222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Encelia farinosa"
 ]
}

 The dataset includes 31222 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023391-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15585954
title: Data for de la Barrera Cardozo et al. Triatominae

description: Dated phylogenetic trees of Triatomiinae including all taxa from Kieran et al. (2021) or only taxa used in biogeography analyses.
DOI: 10.5281/zenodo.17602818
title: The DESI DR1 Peculiar Velocity Survey: growth rate measurements from the maximum likelihood fields method

description: Supplementary material to DESI's publication "The DESI DR1 Peculiar Velocity Survey: growth rate measurements from the maximum likelihood fields method" to comply with the data management plan. 

This zip file contains all data points and MCMC chains needed to replicate all plots in the paper. The data points and codes needed to replicate plot x are inside the subfolder figurex. The python and c code used to generate the analytical covaraince matrix and run the MCMC are available at https://github.com/YanxiangL/Peculiar_velocity_fitting.