cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3613154_d3.v1
title: Additional file 3: Table S2. of Genomic analysis of the multi-host pathogen Erysipelothrix rhusiopathiae reveals extensive recombination as well as the existence of three generalist clades with wide geographic distribution

description: Excel spreadsheet presenting cluster statistics for host species, geographic location, and submitting laboratory, as output from the program BaTS. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3613163_d2.v1
title: Additional file 2: Table S1. of Spinal cord injury induces astroglial conversion towards neuronal lineage

description: Database of differential expression comparison of activated astrocyte RNA-Seq data relative to non-injured control astrocyte at 1 and 2Â weeks after hemisection and full transection injuries. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3613154_d4.v1
title: Additional file 1: Table S1. of Genomic analysis of the multi-host pathogen Erysipelothrix rhusiopathiae reveals extensive recombination as well as the existence of three generalist clades with wide geographic distribution

description: Excel spreadsheet of the Erysipelothrix spp. isolates used in this study, including metadata and assembly statistics. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.c.3613163_d3.v1
title: Additional file 3: Table S2. of Spinal cord injury induces astroglial conversion towards neuronal lineage

description: Pathway analysis of differentially expressed genes in activated astrocytes after hemisection and full transection injuries. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3613136_d9.v1
title: Additional file 9: Table S1. of Structure, evolution and functional inference on the Mildew Locus O (MLO) gene family in three cultivated Cucurbitaceae spp.

description: Gene-specific primers used in this study for gene-expression analysis. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3613178_d1.v1
title: Additional file 2: of Influence of grand-mother diet on offspring performances through the male line in Muscovy duck

description: Supporting data. (TXT 27 kb)
DOI: 10.17863/cam.26377
title: Data for "Controlling Self-Assembly in Gyroid Terpolymer Films By Solvent Vapor Annealing"

description: Please see "Dataset" file in zip folder for full information about the dataset.
DOI: 10.6084/m9.figshare.c.3613241_d11.v1
title: MOESM11 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 11 (XLSX 41550Â kb)
DOI: 10.25574/cdc.301
title: Chandra X-ray Observatory Chandra Data Collection for request #301

description: Chandra Data Collection for request #301
description: DOI updated to include the publication's DOI on 2024-12-17-11:00:00
DOI: 10.6084/m9.figshare.c.3613184_d18.v1
title: Additional file 21: Table S20. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Differentially methylated CpG sites in infratentorial pilocytic astrocytomas, supratentorial astrocytomas and diffuse astrocytomas. 1_ MethLAB analysis identified 676 CpG sites that are significantly differentially methylated in infratentorial pilocytic, supratentorial pilocytic and diffuse astrocytomas (Benjamini-Hochberg corrected p-value &lt;0.05). 2_ The 72 differentially methylated CpG sites in supratentorial and infratentorial pilocytic astrocytomas. 3_ The 393 differentially methylated CpG sites for infratentorial pilocytic astrocytomas and diffuse astrocytomas (averaged beta values with δβ ≥ 0.3, Benjamini-Hochberg corrected p-value &lt;0.05). 4_ Genes that show differentially methylated CpG sites and expression between supratentorial and infratentorial pilocytic astrocytomas (genes with fold change ≥ 2 highlighted in grey). (XLSX 406 kb)
DOI: 10.6084/m9.figshare.c.3613241_d12.v1
title: MOESM10 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 10 (XLSX 39Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d19.v1
title: Additional file 19: Table S18. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Differentially methylated CpG sites identified between supratentorial pilocytic astrocytomas and cerebral cortex controls. 1_ MethLAB analysis identified 90,249 CpG sites that are significantly differentially methylated in supratentorial pilocytic astrocytomas, diffuse astrocytomas, glial component of the cerebral cortex, neuronal component of the cerebral cortex, adult cerebral cortex and foetal cerebral cortex (Benjamini-Hochberg corrected p-value &lt;0.05). The adult cerebral cortex controls (including the glial and neuronal components) were taken from [Guintivano et al, Epigenetics 8:290-302, 2013]. The number of differentially methylated sites (averaged beta values with a difference of δβ ≥ 0.3, Benjamini-Hochberg corrected p-value &lt;0.05) identified in tumour and all controls was 382 CpG sites for supratentorial pilocytic astrocytomas. 2_ CpG sites hypermethylated and 3_ hypomethylated in pilocytic astrocytomas compared to controls. 4_ Expression analysis for the genes that show differentially methylated CpG sites. Highlighted genes show ≤ 2 fold change in expression compared to controls. (XLSX 37842 kb)
DOI: 10.6084/m9.figshare.c.3613241_d13.v1
title: MOESM12 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 12 (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d20.v1
title: Additional file 15: Table S14. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Predicted transcription factor binding sites for the 315 differentially methylated signature in low-grade astrocytomas. Table to show TRANSFAC predicted transcription factor binding sites within a 200Â bp region (100Â bp either side of the CpG site detected by the Illumina probe). Illumina annotation highlighted in grey and transcription factor binding predictions plus sequence highlighted in blue. List of the top predicted transcription factors and gene expression levels of the top predicted transcription factors for the low-grade astrocytomas are also shown. (XLSX 215 kb)
DOI: 10.6084/m9.figshare.c.3613241_d14.v1
title: MOESM6 of Network-based integration of molecular and physiological data elucidates regulatory mechanisms underlying adaptation to high-fat diet

description: Supplementary material 6 (CYS 336Â kb)
DOI: 10.6084/m9.figshare.c.3613184_d21.v1
title: Additional file 10: Table S9. of DNA methylation analysis of paediatric low-grade astrocytomas identifies a tumour-specific hypomethylation signature in pilocytic astrocytomas

description: Comparison of pilocytic astrocytomas with diffuse astrocytomas in the test tumour set. 315 CpG sites are shown where δβ ≥ 0.3 (Benjamini-Hochberg corrected p-value &lt;0.05), assessed by MethLAB. Illumina annotation is included. Rows highlighted in grey (42/315 CpG sites) were absent in the 993 differentially methylated CpG sites between tumours and normal brain control. Ordered by chromosomal location. (XLSX 205 kb)
DOI: 10.6084/m9.figshare.c.3613265_d1.v1
title: Additional file 2: of Lysine supplementation is not effective for the prevention or treatment of feline herpesvirus 1 infection in cats: a systematic review

description: Comparative analysis of arginine content of human, cat, HHV-1 and FHV-1 exome. Arginine percentage of human, cat, HHV-1 and FHV-1 proteins. Protein name, protein length in amino acids, the number of arginine residues in the protein and the percentage of arginine in the protein are shown in columns A, B, C and D, respectively. Each data set is sorted on arginine percentage. For human and feline herpesvirus 1, structural proteins are classified based on Genbank annotations (column E). (XLSX 5460 kb)
DOI: 10.17863/cam.39868
title: Research data supporting "A Model for Determining Cardiac Mitochondrial Substrate Utilisation using Stable 13C-labelled Metabolites"

description: Mathematical matrix model for determining the relative oxidation of acetyl-CoA deriving from U-13C labelled sources in the Krebs cycle. Where prompted in the script, insert your measured data for the proportion of the cellular metabolite pool accounted for by each isotopologue, and press run. The model will give a readout, alpha, for the proportional contribution of U-13C substrate to Krebs cycle oxidation.
DOI: 10.6084/m9.figshare.c.3613370_d1.v1
title: Additional file 1: of HIV risk perception and testing behaviours among men having sex with men (MSM) reporting potential transmission risks in the previous 12Â months from a large online sample of MSM living in Germany

description: A subset of the survey dataset including the variables used for the analysis and the data analysis syntax (stata do-file) are provided as Additional File 1 (Zip-archive, including a CSV-data file and the do-file in txt-format). (7Z 111 kb)
DOI: 10.17863/cam.80920
title: Research data supporting "Validation of a desktop-type magnet providing a quasi-microgravity space in a room-temperature bore of a high-gradient trapped field magnet (HG-TFM)"

description: A summary of the research data supporting "Validation of a desktop-type magnet providing a quasi-microgravity space in a room-temperature bore of a high-gradient trapped field magnet (HG-TFM)". Please see ReadMe file for details of the dataset
DOI: 10.15468/dl.n6uv82
title: Occurrence Download

description: A dataset containing 16512 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 16512 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037797-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613442_d7.v1
title: Additional file 13: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig.Â 4. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3613466_d4.v1
title: MOESM4 of 
                     Clostridium thermocellum DSM 1313 transcriptional responses to redox perturbation

description: Additional file 4. qPCR validation of expression differences of selected genes of interest.
DOI: 10.17863/cam.71656
title: Research data supporting "Cigarette pack size and consumption: an adaptive randomised controlled trial"

description: This is a two-stage adaptive parallel group RCT in which Australian smokers who usually purchase packs containing ≥25 cigarettes were randomised to use only packs containing 20 cigarettes (intervention) (n = 40) or their usual pack size (control) (n = 39) for four weeks. The primary outcome, the average number of cigarettes smoked per day, was measured through collecting all finished cigarette packs, labelled with the number of cigarettes participants smoked. Secondary outcomes included: Heaviness of smoking, motivation to stop smoking and autonomy over smoking. Comparisons in the primary and secondary outcomes were made between study arms using general linear models in the standard analysis. The interim analysis was used for a sample size re-estimation when 124 participants had completed the study. A preregistered protocol and statistical analysis plan can be found here: https://osf.io/g45zn/. The deposit includes the following files: CigPackSizeStudy_Protocol_20181203 CigPackSizeStuy_AdditionalFile2_MissingandInconsistentData_20190430 CigPackSizeStudy_DataDictionary_20210618 As well as (which were used during the standard analysis): CigPackSizeStudy_SAP_20190611 CigPackSizeStudy_PackLevelData_v1.0_20190405 CigPackSizeStudy_ParticipantLevelData_20190405 CigPackSizeStudy_RecodingImputingAndMerging_20190405 CigPackSizeStudy_AnalysisCode_20190405 And (which were used for the interim analysis): CigPackSizeStudy_InterimAnalysis_HSIQ2_20190211 CigPackSizeStudy_InterimAnalysis_PackLevelData_20190211 CigPackSizeStudy_InterimAnalysis_ParticipantLevelData_20190211 CigPackSizeStudy_InterimAnalysisCode_R_vs4_20190211 The data dictionary defines the contents of all data files (pack and participant level, and standard and interim analysis) comprehensively and can be opened in Microsoft Excel. Data files can also be opened in Microsoft Excel.
DOI: 10.6084/m9.figshare.c.3613442_d9.v1
title: Additional file 17: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig.Â 6 . (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3613442_d11.v1
title: Additional file 9: of Tankyrase inhibition impairs directional migration and invasion of lung cancer cells by affecting microtubule dynamics and polarity signals

description: Raw data for Fig. S3. (XLSX 161 kb)
DOI: 10.6084/m9.figshare.c.3613487_d4.v1
title: Additional file 2: of Passive dust collectors for assessing airborne microbial material

description: Bacteria OTU table. The file contains the full dataset of bacterial orders detected.
DOI: 10.6084/m9.figshare.c.3613589_d1.v1
title: Additional file 6: of KIAA0556 is a novel ciliary basal body component mutated in Joubert syndrome

description: Results of the SF-TAP analysis with over-expressed N-terminally SF-TAP-tagged KIAA0556 in HEK293T cells. Shown is the number of unique identified peptides as well as the sequence coverage for each protein detected by mass spectrometry. Proteins identified in &gt;1 out 17 SF-TAP control experiments (empty vector) were removed. (XLSX 28 kb)
DOI: 10.6084/m9.figshare.c.3613598_d1.v1
title: Additional file 1 of Statistical analysis of a Bayesian classifier based on the expression of miRNAs

description: The datasets are available as Supplementary Material. (TXT 12.8 KB)
DOI: 10.6084/m9.figshare.c.3613604_d2.v1
title: Additional file 2: Table S1. of Metabolic clusters of breast cancer in relation to gene- and protein expression subtypes

description: Antibodies used for reverse phase protein array (RPPA). Table S2. Metabolite integrals for each of the samples included in the study. Table S3. Significantly different expressed genes between the three metabolic clusters. Table S4. Significantly different expressed genes between the metabolic clusters Mc1 and Mc2. Table S5. Significantly different expressed genes between the metabolic clusters Mc1 and Mc3. Table 6. Statistically over-represented annotation terms, according to DAVID, of differently expressed genes between metabolic cluster Mc1 and Mc2. Table S7. Statistically over-represented annotation terms, according to DAVID, of differently expressed genes between metabolic cluster Mc1 and Mc3. Table S8. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc1 was compared with Mc2 and Mc3. Table S9. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc1 was compared with Mc2. Table S10. Gene set enrichment analysis (GSEA) result for gene ontology (GO) gene sets. Metabolic cluster Mc3 was compared with Mc1 and Mc2. Table S11. Integrated pathway analysis result from the comparison of the metabolic clusters Mc1 compared to Mc2. Table S12. Integrated pathway analysis result from the comparison of the metabolic clusters Mc1 compared to Mc3. (XLSX 337 kb)
DOI: 10.15468/dl.cgy5sd
title: Occurrence Download

description: A dataset containing 7723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Morococcyx erythropygus (Lesson, 1842)"
 ]
}

 The dataset includes 7723 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037798-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613724_d1.v1
title: Additional file 1: of Treatment policy change to dihydroartemisininâ  piperaquine contributes to the reduction of adverse maternal and pregnancy outcomes

description: Pregnant women form.
DOI: 10.6084/m9.figshare.c.3613682_d11.v1
title: Additional file 1: Table S1: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Species-specific and total 16S rDNA quantitative realtime-PCR measurements. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3613682_d12.v1
title: Additional file 2: Table S2: of Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

description: Design of dilution experiment. (XLSX 16 kb)
DOI: 10.15468/dl.gbtyam
title: Occurrence Download

description: A dataset containing 17391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-8.6606 40.6363,-8.6649 40.63274,-8.64889 40.62443,-8.63748 40.63558,-8.6529 40.6431,-8.6606 40.6363))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 17391 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037800-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613727_d1.v1
title: Additional file 3: of Land or sea? Foraging area choice during breeding by an omnivorous gull

description: Table of analyzed GPS data (.xls). Foraging trips of lesser black-backed gulls, tracked by GPS. The analyzed data are provided as an Excel file, with two sheets, ‘GPS_foraging_trip_data’ giving the analyzed variables, and ‘Metadata’ explaining these variables. (XLSX 384 kb)
DOI: 10.17863/cam.44075
title: Research data supporting "Reconstructing entrepreneur and business numbers for censuses 1851–81" (WP9) and "Shifts in agrarian entrepreneurship in mid-Victorian England and Wales" (Agricultural History Review)

description: Data set provides the cut-offs for each Registration District code in England and Wales 1851–1881 for a logit estimate using a 0.25 threshold, as described in Working Paper 9, and published in Agricultural History Review 2019, Montebruno et al. Also provided are the alpha and beta coefficients of the logit estimator. Reference for WP9: Bennett, Robert, J., Montebruno, Piero, Smith, Harry, and van Lieshout, Carry (2018) Reconstructing entrepreneur and business numbers for censuses 1851-81. Working Paper 9: ESRC project ES/M010953: ‘Drivers of Entrepreneurship and Small Businesses’, University of Cambridge, Department of Geography and Cambridge Group for the History of Population and Social Structure. Reference for Agri. Hist. Rev. article: Montebruno, P., Bennett, R.J., van Lieshout, C., Smith, H. and Satchell, M., 2019. Shifts in agrarian entrepreneurship in mid-Victorian England and Wales. Agricultural History Review 67 (1): 71–108.
DOI: 10.6084/m9.figshare.c.3613727_d2.v1
title: Additional file 7: of Land or sea? Foraging area choice during breeding by an omnivorous gull

description: Agricultural field parameters (.xls). Vegetation parameters of the agricultural fields surveyed in on-site portion of the study, along with L. fuscus presence/absence counts, earthworm, other gull species and wader numbers throughout the study period (May-June 2013). (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3613748_d1.v1
title: MOESM3 of Group size, survival and surprisingly short lifespan in socially foraging bats

description: Additional file 3 : Survival matrix of 63 adult females analysed with MSMR models. The columns represent respectively the 15 months of recording with absence or group size (1-15), the sex (16), the age (17), the year of first marking (18), and the capture site (19).
DOI: 10.34740/kaggle/dsv/10228010
title: Mahanagar Yatayat Transport Dataset
DOI: 10.6084/m9.figshare.c.3613820_d1.v1
title: Additional file 1 of Generalizing boundaries for triangular designs, and efficacy estimation at extended follow-ups

description: Supplementary R functions. Zip file containing all R code necessary to reproduce our results, together with description files that explain how to use the functions. Installation instructions can be found at: http://cran.r-project.org/doc/manuals/r-release/R-admin.html#Installing-packages . (PDF 463 kb)
DOI: 10.23668/psycharchives.4644
title: Data for: Tactile temporal offset cues reduce visual representational momentum

description: Data sets for the manuscript: Merz, S, Frings, C. & Spence, C. (2021): Tactile temporal offset cues reduce visual representational momentum, to be published in Attention, Perception, and Psychophysics
DOI: 10.17863/cam.26411
title: Research data supporting "On the Energetics of Bound Charge-Transfer States in Organic Photovoltaics"

description: This dataset includes data for figures in the main text and the supporting information. The detailed description of the data is followed. Figure 1. (c) Normalised absorption for the materials. (e) J-V curves for MDMO-PPV:mPCBM (blend ratios, 1:1, 1:2 and 1:4), MDMO-PPV:bPCBM (blend ratio, 1:1), and MDMO-PPV:tPCBM) (blend ratio, 1:1) devices under 100 mW/cm2 illumination at AM1.5G. Figure 3. PPP dynamics at room temperature (300 K) of devices with D-A ratios of (a) 1:2 and (b) 1:1. Figure 4. Temperature-dependent PPP response of MDMO-PPV:bPCBM (1:1) from 160K to 300K. Figure 5. Activation energy as a function of driving energy in the studied blends with different donor: acceptor blend ratios (1:1, 1:2 and 1:4). Figure S1 UV-Vis absorption of films of MDMO-PPV:fullerene derivatives (a) mPCBM (b) bPCBM and (c) tPCBM with blend ratios of 1:1, 1:2 and 1:4. Figure S2 PPP response at room temperature (300 K). (a) MDMO-PPV:mPCBM (b) MDMO-PPV:bPCBM and (c) MDMO-PPV:tPCBM. Figure S3 Typical Raw PPP kinetics without background removal in MDMOPPV:bPCBM(1:1) device. The background signal is assigned to long-lived trapped states and multi-photon excitations. Figure S4 Full dataset of (i) the PPP dynamics in different devices, (ii) temperature dependence of J, dJmax and dJmax/J, and (iii) Arrhenius plots of J and dJmax/J.
DOI: 10.6084/m9.figshare.c.3613790_d11.v1
title: Additional file 9: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: Read counts for each 8mer in the main screen. (XLS 868Â kb)
DOI: 10.15468/dl.c6qrfv
title: Occurrence Download

description: A dataset containing 54900 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myadestes occidentalis Stejneger, 1882"
 ]
}

 The dataset includes 54900 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037799-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3613790_d12.v1
title: Additional file 13: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: RBP motifs that were tested in the main screen. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3613790_d13.v1
title: Additional file 3: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: Read counts for each 8mer from the pilot screen. (XLS 1369Â kb)
DOI: 10.6084/m9.figshare.c.3613790_d17.v1
title: Additional file 12: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: miRNA expression in HEK293-FLP cells and expression scores of miRNA targets. (XLS 140Â kb)