cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/r4xknxx93h
title: LINF_220010100

description: 40S ribosomal protein S15 | uS19 Leishmania infantum (strain JPCM5)
DOI: 10.17632/sc6bd7z74p
title: LINF_160015700

description: Protein of unknown function (DUF3184) Leishmania infantum (strain JPCM5)
DOI: 10.17632/t78p5tgvrc
title: Metagenomic dataset of flesh-footed shearwater (Ardenna carneipes)

description: Source of sampling and extraction of DNA

A cutaneous tissue sample was collected from Flesh-footed Shearwater originating from Lord Howe Island, New South Wales, located approximately 500 km off the east coast of Australia during April 2015 (sample ID15-1527, GPS location: 32.53° S, 159.08° E). The sample was collected with the permission of the Lord Howe Island Board (permit no. LHIB 02/14) under the approval of the University of Tasmania and Charles Sturt University Animal Ethics Committees (permit no. A0010874, A0011586, and 09/046). The genomic DNA was isolated according to our previously established protocol (Sarker et al., 2017) using the Qiagen Blood and Tissue mini kit (Qiagen, Germany). The extracted DNA has been stored at -20 °C for further testing at Charles Sturt University. 

Sequencing, assembly and annotation of complete mitogenome of A. carneipes 
The library preparation and sequencing was performed as previously described (Sarker et al., 2017). Briefly, the paired-end library with an insert size of 150 bp was prepared using the Illumina paired-end sample preparation kit (Illumina, San Diego, CA) according to the manufacturer's instructions. Sequencing of the pooled DNA-library was performed on a HiSeq4000 sequencing platform (Illumina) according to the manufacturer’s instructions by Novogene, China. Sequencing data used in this study were analysed according to the previously established pipeline (Sarker et al., 2017; Sarker et al., 2019a; Sarker et al., 2019b) using Geneious (version 10.2.2, Biomatters, New Zealand) and CLC Genomics Workbench (version 9.5.4). Briefly, a total of 14.42 million reads with a read length of 150 bp was used to obtain the complete mitochondrial genome of A. carneipes.
DOI: 10.17632/v9t87zr5bb
title: Efficacy of fungicides against brown spot of pear in Argentina

description: Brown spot of pear (BSP), a fungal disease of importance in Europe, has been recently detected for the first time in pear orchards in the Alto Valle of Río Negro (Patagonia), Argentina, South America. The disease is caused by Stemphylium vesicarium and its main symptoms are lesions in fruits and leaves. To assess counteracting measures against BSP, we tested the efficacy of fungicides by means of in vitro assessment of mycelial growth and spore germination of native S. vesicarium strains, and in vivo preventive and curative treatments in pear fruit 'D'Anjou' var. The fungicides were chosen according to their commercial availability and registration in pear crops and included: pyraclostrobin + boscalid (Bellis®); ziram (Ziram®); captan (Merpan®); and Melaleuca alternifolia extract (Timorex®). In addition, the efficacy of Bellis® and Ziram® was determined through in-field assays.
DOI: 10.17632/vf52vs77jr
title: COVID-19 DIRECTIVES

description: ADULT US POPULATION
DOI: 10.17632/vvrz89yvxx
title: LDHU3_09.1210

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/xg4542s28z
title: CNP-AA Meta Analysis Data

description: Relationship Between Controlled Negative Pressure and Ambient Aerosol Respirator Fit Tests
DOI: 10.17632/25spzbjj3n
title: Interview

description: Interview
DOI: 10.17632/2m656jrwpn
title: Mass Spec Molecular Oncology Charpentier et al., 2021

description: These files contain the full analysed mass spec data of the results presented in Charpentier et al., 2021 Molecular Oncology. We focused on MELOE-1, a melanoma neoantigen whose expression is restricted to tumor cells as a result of lineage-specific transcription and tumor-specific IRES-dependent translation of the polycistronic meloe RNA (Godet et al., 2008 and Bobinet et al., 2013). Our previous study on MELOE-1 translation reported the presence of an IRES activity located around 250nt upstream of MELOE-1 ORF (Carbonnelle et al., 2013). In the present work, we looked for the ITAF(s) that could bind to this region. To this aim, we in vitro transcribed the 275nt RNA sequence upstream of MELOE-1 ORF, biotinylated it and coupled it to a streptavidin BIAcore chip. We then prepared whole cell lysates from three melanoma cell-lines M117, M134 and M170, ran them on the RNA-coated BIAcore chip (40 rounds of 5 min injections) and then recovered the eluted material for mass spectrometry analysis. references: Godet Y et al. MELOE-1 is a new antigen overexpressed in melanomas and involved in adoptive T cell transfer efficiency. J Exp Med 2008;205(11):2673–2682. Bobinet M et al. Overexpression of Meloe Gene in Melanomas Is Controlled Both by Specific Transcription Factors and Hypomethylation. PLoS ONE 2013;8(9):e75421. Carbonnelle D et al. The Melanoma Antigens MELOE-1 and MELOE-2 Are Translated from a Bona Fide Polycistronic mRNA Containing Functional IRES Sequences. PLoS ONE 2013;8(9).
DOI: 10.17632/46w58d5ftb
title: Data on certain sweat markers (sodium, potassium) of Cameroonian soccer players, handball players and half-marathoners and their responses to questionnaires on hydration, sweating and eating habits.

description: These data concern the dosage of sweat markers such as sodium and potassium in three groups of Cameroonian athletes, namely soccer players, handball players and half-marathoners. The sweat was collected following a Bruce test. Sociodemographic and physiological parameters were also measured. A questionnaire providing information on hydration, sweating and eating habits was also provided.
DOI: 10.17632/4wdh2dmf64
title: LDHU3_11.1160

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/76fnr524m2
title: LINF_300034500

description: mitogen-activated protein kinase 5 | MPK5
Leishmania infantum (strain JPCM5)
DOI: 10.17632/f6p2kfr2d7
title: LINF_330029500

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f6p7sf7cfs
title: Supplementary Appendix I
DOI: 10.17632/fh3bbsp96t
title: Clearing method adapted to PPFE tissues allows to localize nerve fibers and B-cell rich lymphoid structures by 3D imaging, Azar et al, all videos

description: A total of 7 videos
DOI: 10.17632/hrrv2gxbbx
title: Supplement: Lean body mass in boys with Prader-Willi syndrome increases normally during spontaneous and induced puberty

description: We were interested in the average effect of time and fat mass index (FMI) on lean mass index (LMI) in boys with Prader-Willi syndrome (PWS) in the pre-pubertal and pubertal phase. For statistical analysis, we chose two-level linear mixed models (LMMs). We separated the time around puberty into two periods and calculated respective models: one for the pre-pubertal period and one for the pubertal period. Time was centred to the onset of puberty. The models were estimated using the restricted maximum likelihood method and nloptwrap optimiser. LMI for both periods showed a moderate skewness (≤0.85) and FMI was highly skewed (≥0.97). Before the inclusion of FMI values into the models, we reduced the skewness by using a log10 transformation.
In our first approach, we fitted the models to predict LMI with time only as a fixed effect and time and subject as random effects (Model A formula: LMI ~ time + (time | subject)). 
As a second approach, FMI_log10 was added as a fixed effect to test whether it influences LMI (Model B formula: LMI ~ time + FMI_log10 + (time | subject)). Model fit of the models A and B were then compared using the Likelihood Ratio Test and 95% CI and p-values were computed using the Wald approximation. 

This supplement shows the Q-Q-plots and histograms of the residuals of both A models. The Likelihood Ratio Test showed that B models were no better than A models.
DOI: 10.17632/hs7hsgj6sx
title: Age first gestation dataset

description: Many studies have focused on comparing the performance of beef heifers and multiparous dams' offspring, but few have explored how the age at first gestation impacts female progeny development and reproductive performance. This research demonstrates that the age at which heifers become pregnant can indeed influence their female progeny's reproductive development. The findings suggest that age at first conception has a notable impact, with adverse effects more pronounced in offspring born to heifers at 15 months. Therefore, selecting replacement heifers born at 27 months is more favorable, as they exhibit larger follicle diameters and better reproductive tract scores at younger ages compared to those born at 15 months. Nevertheless, using heifers born to adult cows remains the most recommended choice due to their greater development and precocity, even compared to those born at 15 or 27 months.
DOI: 10.17632/k29hrkw7gg
title: LINF_050006400

description: Leucine Rich repeat-containing protein; Leishmania infantum
DOI: 10.17632/k7zymk7cpz
title: Data for: Commuting Speed as a Proxy for the Value of Time

description: This is the main dataset for "Commuting Speed as a Proxy for the Value of Time."
DOI: 10.17632/kfzjtrmthb
title: Recognition of yeast b-glucan particles triggers immunometabolic signalling required for trained immunity, Horneck-Johnston et al

description: Summary Data for Figures in linked manuscript.
Each Excel file corresponds to 1 Figure & corresponding Supplemental Figures.
Each tab contains biological replicate values for each experiment, summary statistics (mean/sd etc) and P-values derived from statistical tests to detect differences across conditions.
DOI: 10.17632/nbx8s2jt6w
title: Itraconazole Data (UMH)

description: Data from composition, characteristics, dissolution and permeability of itraconazole formulations.
DOI: 10.17632/nvwjmnsnjp
title: How GPCR phosphorylation patterns orchestrate arrestin-mediated signaling

description: Repository contains experimental data (site-directed spectroscopy measurements, fluorescence polarization assays, and BRET/ELISA measurements) for this manuscript. Simulation datasets are located at DOI 10.5281/zenodo.3991060.
DOI: 10.17632/yww3zphp7x
title: González_et_al

description: The raw data and processed data of the research paper "Spatiotemporal guidance of angiogenesis and neurogenesis on Elastin-Like Recombinamer scaffolds combining proteolytic sequences, VEGF-mimetic peptide and IKVAV laminin-derived peptide"
DOI: 10.17632/zv2yv5xbf4
title: Supplementary material: Tables and Figures COVID-19 in Mexican Population

description: Supplementary material: Tables of results about Knowledge, attitudes and practices in mexican population through online survey in April 2020, during the phase 2 of pandemic of COVID-19.
DOI: 10.17632/3v2nswp59s
title: Data for: The performances of serum activins and follistatin in the diagnosis of ectopic pregnancy: A prospective case-control study

description: The file contains the raw data for all the biomarkers in addition to maternal age and gestational age
DOI: 10.17632/5pkdjgmwsc
title: SWATH-MS analysis raw datasets: protein expression in OCI-AML3 and MV4-11 cells

description: These raw datasets illustrate protein expression in both OCI-AML3 and MV4-11 cells in baseline, FLT3-stimulated, or FLT3-inhibited conditions.
DOI: 10.17632/8jx9mf7342
title: LINF_080005600

description: zinc-finger motif, C2HC5-type/ASCH domain containing protein; Leishmania infantum
DOI: 10.17632/bbvy6fvfnr
title: Revised Lake Bonny Dataset - Volante et al.

description: This file contains the data used in Figures 2 - 6, and the tabs in the file are named accordingly. Figure 2 contains the abundance of zinc, total lead, total lead-210, excess lead-210, and radium-226 in the Lake Bonny core. Figure 3 contains the raw data used in the serac model (left) and the age model produced by the serac piecewise CRS model (right). Figure 4 contains the radium-226 activity and phosphorous abundance in the core. Figure 5 contains the loss on ignition value, total mass accumulation rate, organic and mineral mass accumulation rates, and the population of Lakeland, Florida. Figure 6 contains the radium-226 activity and water pumpage values for Lakeland, Florida over time.
DOI: 10.17632/bsc252bx8b
title: Exploring the Attitudes of Dutch Mental Health Care Professionals towards Psychedelic-Assisted Psychotherapy: A Cross-Sectional Survey

description: Raw data set clinicians' attitudes towards psychedelic assisted psychotherapy
DOI: 10.17632/cs7yxdyd7k
title: ERYA-Bulk and ERYA-Profiling: An application for quantitative PIGE analysis 

description: Compute the gamma-ray yield coming from a sample bombarded by a energetic (few MeV) beam of charged particles (namely protons). The yield corresponding to a given element depends on the mass fraction of this element and on the major composition of the sample which determines the rate of energy loss by the beam. It also depends on the detector efficiency, the collected beam charge (i.e., number of projectiles) and the cross-sections of the relevant gamma-producing nuclear reaction. 
All data inputs can be loaded from a file or inserted by the user. The energy straggling along the beam interaction with the sample, irrelevant for bulk analysis, is determinant for depth profiling. 

The yield calculation is made by numerical integration of an analytical formula that depends on several quantities which can be analytical in nature or approximated by interpolation (the cross-section data interpolation is one example).
The straggling and energy dispersion also depends on energy distributions which have different numerical approximations. A modular approach using the object-oriented programming helps to implement different models to the main integration routine, and make the source code more readable and prone for future extensions.
A fitting feature was implemented on ERYA-Bulk to adjust the sample composition to the experimental yield results.
DOI: 10.17632/dt332cpczt
title: Supplementary data, Linking two-dimensional lower limb angles and muscle strength to maximum gait speed in individuals with hemiplegic stroke

description: Supplementary data
DOI: 10.17632/f4445hrjcw
title: Supplementary data

description: 1. Optimization of RFIA for the SARS CoV-2 RBD-ACE2 blocking neutralization antibody.
2. The dual-detection ratiometric algorithm of T2/(T1+T2) method improved the precision compared with the method of single signal T/C which used in classical lateral flow assay.
DOI: 10.17632/fd45dm2bz5
title: Improved split TEV GPCR beta-arrestin recruitment assays 

description: Data set for "Improved split TEV GPCR beta-arrestin recruitment assays via systematic analysis of signal peptide and a beta-arrestin binding motif variants" as published in Wu et al., Biosensors 2023, 13(1), 48; https://doi.org/10.3390/bios13010048 

Data contain firefly luciferase readings from split TEV GPCR beta-arrestin-2 recruitment assays in four cell lines (HEK-293, U-2 OS, HeLa, and PC12-tetOff cells).
Data from dose response assays for GLP1R and GCGR were performed in HEK-293 cells (data files "DRC").
DOI: 10.17632/fh2yg5nymw
title: Almaty city, Kazakhstan, groundwater flooding  Visual MODFLOW modeling dataset

description: This dataset was applied in a MODFLOW groundwater flow model to simulate and quantitatively assess the hydrogeological condition changes affecting and affected by the groundwater flooding process on the Almaty city “Akbulak micro-district”. It was assumed that the shift to hydrological flash flooding regime is related to the area's urbanization process. The model validated that changing the natural drainage system and extending the paved areas are the triggers for the drainage pattern change.
DOI: 10.17632/fpjn4h8wsh
title: The complete mitochondrial genome and phylogenetic analysis of the ornate flying snake (Colubridae: Chrysopelea ornata)

description: The first complete mitochondrial genome sequencing of golden tree snake, gliding snake, ornate flying snake, golden flying snake, and flying tree snake (Chrysopelea ornata)
DOI: 10.17632/mngc49xx5g
title: Data for: Comparison of RNA editing activity of APOBEC1-A1CF and APOBEC1-RBM47 complexes reconstituted in HEK293T cells

description: DNA sequences
DOI: 10.17632/nbtrgh5frn
title: Dataset for DESC Model Article

description: Copyright (c) 2021 by Erhan YILMAZ (https://orcid.org/0000-0003-4788-9022) This dataset contains code scripts, matlab, simulink files and results to the related article. This dataset is licensed under CC BY-SA (Attribution-ShareAlike) It is provided "as is", without express or implied warranty, for educational and informational purposes only.
DOI: 10.17632/pmprw52yxg
title: Towards reduction of energy consumption in public buildings in the times of energy carrier market crisis

description: data obtained in the survey study of the representatives of Polish local governments - 378 random local governments in Poland ; survey June and August 2023.
DOI: 10.17632/ss243khyzm
title: Supplemental material Real-world outcomes with ipilimumab and nivolumab in advanced melanoma

description: Supplemental material Real-world outcomes with ipilimumab and nivolumab in advanced melanoma: a retrospective multicenter study
DOI: 10.17632/vf2wjrf6cv
title: LINF_280009800

description: Nucleus and spindle associated protein 1 | NuSAP1
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5crp7zrt8v
title: Butlerov

description: Data collected by using Syringebot for the Butlerov reaction (sugar formation from formaldehyde and calcium hydroxide) followed by platinum electrode
DOI: 10.17632/5gthdtt4rk
title: LINF_300020600

description: pseudouridine synthase | TruA
Leishmania infantum (strain JPCM5)
DOI: 10.17632/63y8mjzt8r
title: PROVAM Supplementary Data 

description: PROVAM Questionnaire
DOI: 10.17632/6yy8yjyrpy
title: Morphological dataset of Cardamine (Brassicaceae) species from the Balkan Peninsula and relatives

description: Matrix of morphological characters measured in 847 individuals of Cardamine species from the Balkan Peninsula and relatives (incl. C. barbaraeoides, C. acris, C. amara, C. raphanifolia)
DOI: 10.17632/7yybvp9yn8
title: Measuring students' perception of the ethical climate in their intended fields of study

description: The data set is based on the ethical climate index tool developed by Arnaud (2010). It is used to measure the perception of business and engineering students in a private university regarding the ethical climate in their fields. All items are measured on a scale of one (strongly disagree) to five (strongly agree). Confirmatory factor analysis was used to demonstrate the reliability and the goodness-of-fit of the ethical climate index. Between-group analysis reveals that while no differences exist between business and engineering students on five of the dimension, engineering students have a significantly higher mean on the dimension Collective moral judgment – focus on others. The implications of this finding are discussed along with directions for future research.
DOI: 10.17632/84r584byy2
title: LINF_090015800

description: O-phosphoseryl-tRNA(Sec) selenium transferase; Leishmania infantum
DOI: 10.17632/8d879w4c8g
title: NF-κB-inhibitor QNZ suppresses B-cell hyper-activation and ameliorates the progression of experimental systemic lupus erythematosus

description: This data for "QNZ suppresses B-cell hyper-activation and ameliorates the progression of experimental systemic lupus erythematosus".
DOI: 10.17632/kvtry9s4dw
title: Moderate Heart Rate Reduction Promotes Cardiac Regeneration through Stimulation of the Metabolic Pattern Switch

description: Dataset from manuscript: Jing Tan, Ming Yang, Weibin Cai. Moderate Heart Rate Reduction Promotes Cardiac Regeneration through Stimulation of the Metabolic Pattern Switch. Cell Reports, 2022.
DOI: 10.17632/mxh7vmywhd
title: Data for: Extremely light K isotopes in subducted low-T altered oceanic crust: Implications for K recycling in subduction zone

description: The K isotopes of eclogites
DOI: 10.17632/ry3c3pvbfs
title: Oil price shocks and global liquidity: macroeconomic effects on the Brazilian real exchange rate

description: This paper examines the effects of the interaction between the oil market and measures of global liquidity on the Brazilian real exchange rate against the U.S. dollar, using an SVAR framework. The results show that approximately 16\% of the variance of the real exchange rate is associated with oil-specific demand shocks in the long run. Supply and aggregate demand shocks are less important. The recovery of the Brazilian real exchange rate in the aftermath of the global financial crisis is more related to advanced economies' liquidity than oil prices. Oil price changes affect the interest rate spread, which puts further pressure on the real exchange rate. Our results shed light on the impact of oil price shocks on the Brazilian economy by providing important insights into the foreign exchange policy in Brazil.
DOI: 10.17632/szctwcghm3
title: Dietary Ocimum gratissimum essential oil improves intestinal microbiota and morphology of Piaractus mesopotamicus 

description: Plant essential oils have been reported to present several beneficial effects for fish such as increased intestinal microflora modulation, improved nutrient absorption through beneficial effects in intestinal morphometry and improvements in productive parameters. In this study, juveniles of pacu (Piaractus mesopotamicus), an important fish species for neotropical aquaculture, were fed with 0.5 and 1% of Ocimum gratissimum essential oil (EO) for 30 days. At the end of this period, the intestinal microbiota of the pacus was relatively quantified through qPCR, and the intestinal morphometry was evaluated using histometric methods. Fish were also measured and weighed, and the productive parameters were calculated. O. gratissimum EO feeding at 1% significantly altered the intestinal microflora of juvenile pacus, resulting in higher relative quantification in bacteria from the genera Enterococcus, Bacillus and Lactobacillus when compared to 0.5% and control groups. O. gratissimum EO feeding also significantly affected their intestinal morphometry, increasing the villi thickness and area at 1% of EO and decreasing the same parameters at 0.5% of EO when compared to the control. No significant effects were observed in productive parameters. Our results suggest that the exposure of P. mesopotamicus to O. gratissimum at 1% concentration for 30 days modulates the intestinal microbiota and increases the intestinal nutrient absorption area.
DOI: 10.17632/v6tcg35bjg
title: Synchronized VRP Test Instance

description: Randomly generated test instance for synchronized vehicle routing problem models
DOI: 10.17632/x96wdrpywh
title: Dementia Knowledge in a Cuban Sample

description: Observational study on the knowledge of dementias in the Cuban population
DOI: 10.17632/xmpnfd79bt
title: Data for: Mineralogy of a possible ancient lakeshore in the Sutton Island member of Mt. Sharp, Gale crater, Mars, from Mastcam multispectral images

description: Mastcam multispectral data for: Mineralogy of a possible ancient lakeshore in the Sutton Island member of Mt. Sharp, Gale crater, Mars, from Mastcam multispectral images
DOI: 10.17632/zbnvgrd28f
title: Optimal recovery after colon cancer in elderly population

description: Raw data.
DOI: 10.17632/2pzs5mgthc
title: Data and analysis code for 'Does professionalizing maintenance unlock demand for more reliable water supply? Experimental evidence from rural Uganda.'

description: Cleaned data and replication analysis code for Stata for the research article, "Does professionalizing maintenance unlock demand for more reliable water supply? Experimental evidence from rural Uganda."
DOI: 10.17632/4j22vtxxf2
title: COVID-19 data

description: Covid-19 Hongkong, South Korea, Italy, Indonesia