cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19478984
title: Assessing the suitability of urban-oriented land cover products for mapping rural settlements - accuracy data and code

description: The data covers two independent accuracy assessmets, based on 2 sets of randomly selected points, for three urban-oriented land cover products: Global Urban Footprint - GUF, European Settlement Map - ESM and Open Street Map - OSM) to detect rural settlements in the Carpathian ecoregion. The study area covers the Carpathians located in 5 countries: Czechia, Hungary, Poland, Romania and Slovakia.<br> The accuracy assessment was conducted with two independent approaches regarding the selection of verification points. In the first approach, a set of verification points was defined through the stratified random selection of 500 points per country (2500 points in total) within the area of any of the three analysed settlement datasets combined, hereafter called the ‘total settlement mask’. In the second approach, a set of verification points was defined through the stratified random selection of 500 independent points per country (2500 points in total) within the ‘total settlement mask’ buffered by 100 m, hereafter called the ‘buffer mask’. The dataset is accompanied with Python code.<br> <br>
DOI: 10.5281/zenodo.6521706
title: Terrestrial and aerial photos, GCPs and derived point clouds of a sinkhole in Northern Thuringia

description: Aiming at comparing the results of using either terrestrial or aerial photos for structure from motion photogrammetry of a sinkhole in Northern Thuringia we took these photos in 2017, 2018 and 2019 and surveyed ground control points. Therefore, the data allows both, the comparison of the results of using terrestrial or aerial photos for the 3D reconstruction, and the mulit-year monitoring of geomorphic changes within the sinkhole.
DOI: 10.5281/zenodo.6521705
title: Terrestrial and aerial photos, GCPs and derived point clouds of a sinkhole in Northern Thuringia

description: Aiming at comparing the results of using either terrestrial or aerial photos for structure from motion photogrammetry of a sinkhole in Northern Thuringia we took these photos in 2017, 2018 and 2019 and surveyed ground control points. Therefore, the data allows both, the comparison of the results of using terrestrial or aerial photos for the 3D reconstruction, and the mulit-year monitoring of geomorphic changes within the sinkhole.
DOI: 10.17903/fk2/4g8qmr
title: Ευάλωτες Κοινωνικά Ομάδες (ΕΚΟ) και διακρίσεις στην αγορά εργασίας

description: Η παρούσα έρευνα είναι προϊόν της έρευνας που εκπονήθηκε στο πλαίσιο του Ευρωπαϊκού Προγράμματος PROGRESS "Καταπολέμηση των Διακρίσεων στην Αγορά Εργασίας" που υλοποιήθηκε απο τις 20.12.2011 μέχρι τις 20.12.2012 από το Εθνικό Κέντρο Κοινωνικών Ερευνών (ΕΚΚΕ) σε συνεργασία με τον Οργανισμό Απασχόλησης Εργατικού Δυναμικού (ΟΑΕΔ) και την Εθνική συνομοσπονδία Ατόμων με Αναπηρία (Ε.Σ.Α. με Α). Αφορά Ευπαθείς Κοινωνικές ομάδες, συμπεριλαμβανομένων των μεταναστών.
DOI: 10.5519/qd.9yfj8wsa
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (225 records)
DOI: 10.6084/m9.figshare.19714243
title: Christinaki et al., Supplementary File S4 - The concatenated matrix of mt genes of yeasts for phylogenetic trees used in publication at GBE journal

description: Christinaki et al., Supplementary File S4 - the concatenated matrix of the 14 protein coding mt genes used in the analyses of the yeasts mitogenomes
DOI: 10.6084/m9.figshare.19714243.v1
title: Christinaki et al., Supplementary File S4 - The concatenated matrix of mt genes of yeasts for phylogenetic trees used in publication at GBE journal

description: Christinaki et al., Supplementary File S4 - the concatenated matrix of the 14 protein coding mt genes used in the analyses of the yeasts mitogenomes
DOI: 10.17903/fk2/jl2rnl
title: Κοινωνικές παράμετροι για την αειφόρο ανάπτυξη της Αθήνας - Αττικής

description: Η έρευνα "ΚΟΙΝΩΝΙΚΕΣ ΠΑΡΑΜΕΤΡΟΙ ΓΙΑ ΤΗΝ ΑΕΙΦΟΡΟ ΑΝΑΠΤΥΞΗ ΤΗΣ ΑΘΗΝΑΣ" είχε ως στόχο τη διερεύνηση στον αθηναϊκό χώρο ορισμένων βασικών κοινωνικών διαδικασιών που αναπτύσσονται στις μεγάλες πόλεις και οδηγούν συχνά σε καταστάσεις που απειλούν την κοινωνική συνοχή. Με τη διερεύνηση αυτή επιδιώχθηκε ο εντοπισμός εκείνων των καταστάσεων και των τάσεων εξέλιξης για τις οποίες απαιτούνται διορθωτικές παρεμβάσεις στην προοπτική μιας (και) κοινωνικά αειφόρου ανάπτυξης της πόλης. Η διερεύνηση βασίστηκε σε έναν αριθμό επιμέρους ερευνών πλαισίου (κοινωνικο-δημογραφικές μεταβολές 1981-1991, δημογραφικές εξελίξεις κατά τη δεκαετία του 1990, κοινωνικο-οικονομικές και στεγαστικές ανισότητες στην Αθήνα 1990-2000 και κοινωνικές και χωρικές ανισότητες στην εκπαίδευση) και, κυρίως, σε μια μεγάλη δειγματοληπτική έρευνα σε επιλεγμένους τύπους περιοχής κατοικίας.
DOI: 10.5519/qd.uk38pyzu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (887742 records)
DOI: 10.5519/qd.kre1tt55
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (227577 records)
DOI: 10.5281/zenodo.4630539
title: Data for "Cost-effective implementation of the Paris Agreement using flexible greenhouse gas metrics"

description: This dataset contains the underlying data for the following publication: K. Tanaka, O. Boucher, P. Ciais, D. J. A. Johansson, J. Morfeldt (2021) Cost-effective implementation of the Paris Agreement using flexible greenhouse gas metrics. Science Advances 7 (22):eabf9020. doi:10.1126/sciadv.abf9020 Earlier manuscripts were published as a preprint. https://arxiv.org/abs/2006.01901
description: K.T. benefited from State assistance managed by the National Research Agency in France under the Programme d'Investissements d'Avenir under the reference ANR-19-MPGA-0008.
DOI: 10.5281/zenodo.4630538
title: Data for "Cost-effective implementation of the Paris Agreement using flexible greenhouse gas metrics"

description: This dataset contains the underlying data for the following publication: K. Tanaka, O. Boucher, P. Ciais, D. J. A. Johansson, J. Morfeldt (2021) Cost-effective implementation of the Paris Agreement using flexible greenhouse gas metrics. Science Advances 7 (22):eabf9020. doi:10.1126/sciadv.abf9020 Earlier manuscripts were published as a preprint. https://arxiv.org/abs/2006.01901
description: K.T. benefited from State assistance managed by the National Research Agency in France under the Programme d'Investissements d'Avenir under the reference ANR-19-MPGA-0008.
DOI: 10.6084/m9.figshare.19706584
title: Mass Spectrometry (MS)-Based Peptidomic analysis of In Vitro Gastrointestinal Digestion of Dietary Proteins: Implication for Allergenicity Risk Assessment

description: Supporting information II Figure S1-S8: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after gastric digestion. Supporting information II Figure S9-S17: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after intestinal digestion. <br> Supplementary material III: Summary data on peptides identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, protein description, peptide sequence, peptide score, theoretical precursor mass, peptide modification and normalised and raw abundance. Supplementary material IV: Summary data on proteins identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, peptide count, number of unique peptides, confidence score, protein theoretical mass, protein description, and normalised abundance. <br> Supporting information V Figure S1-S8. Peptide sequence alignment of protein isoforms.
DOI: 10.6084/m9.figshare.19706584.v5
title: Mass Spectrometry (MS)-Based Peptidomic analysis of In Vitro Gastrointestinal Digestion of Dietary Proteins: Implication for Allergenicity Risk Assessment

description: Supporting information II Figure S1-S8: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after gastric digestion. Supporting information II Figure S9-S17: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after intestinal digestion. <br> Supplementary material III: Summary data on peptides identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, protein description, peptide sequence, peptide score, theoretical precursor mass, peptide modification and normalised and raw abundance. Supplementary material IV: Summary data on proteins identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, peptide count, number of unique peptides, confidence score, protein theoretical mass, protein description, and normalised abundance. <br> Supporting information V Figure S1-S8. Peptide sequence alignment of protein isoforms.
DOI: 10.6084/m9.figshare.19706584.v4
title: Mass Spectrometry (MS)-Based Peptidomic analysis of In Vitro Gastrointestinal Digestion of Dietary Proteins: Implication for Allergenicity Risk Assessment

description: Supporting information II Figure S1-S8: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after gastric digestion. Supporting information II Figure S9-S17: Venn diagram of the identified peptides from protein accessions between the triplicates of digests after intestinal digestion. <br> Supplementary material III: Summary data on peptides identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, protein description, peptide sequence, peptide score, theoretical precursor mass, peptide modification and normalised and raw abundance. Supplementary material IV: Summary data on proteins identified by Progenesis of digests after 120 min gastric digestion corresponding to different proteins including protein accession, peptide count, number of unique peptides, confidence score, protein theoretical mass, protein description, and normalised abundance. <br> Supporting information V Figure S1-S8. Peptide sequence alignment of protein isoforms.
DOI: 10.5281/zenodo.6521976
title: Matlab tools to solve the viscous Taylor Goldstein equation for both instabilities and waves

description: <strong>Matlab tools to solve the viscous Taylor Goldstein equation for both instabilities and waves</strong><br> Fourier-Galerkin method is faster and more accurate than the previous finite-difference version.<br> <strong>File list:</strong><br> wave_analysis_FG.m : code to solve demonstration problem (internal gravity waves on the Columbia River plume; data courtesy J. Nash)<br> nash_data.txt : observational data for demonstration problem<br> vTG_FG.m : the main subroutine<br> BaryL.m : auxiliary subroutine<br> vTG_FGprep.m : auxiliary subroutine (call before vTG_FG)<br> Lian_Smyth_Liu20.pdf : Paper to reference for description and testing of code.<br> The underlying theory is described in<em> Instability in Geophysical Flows,</em> by W.D. Smyth and J.C. Carpenter, Cambridge University Press: Available from Amazon and others.
DOI: 10.5281/zenodo.6516994
title: Matlab tools to solve the viscous Taylor Goldstein equation for both instabilities and waves

description: <strong>Matlab tools to solve the viscous Taylor Goldstein equation for both instabilities and waves</strong><br> Fourier-Galerkin method is faster and more accurate than the previous finite-difference version.<br> <strong>File list:</strong><br> wave_analysis_FG.m : code to solve demonstration problem (internal gravity waves on the Columbia River plume; data courtesy J. Nash)<br> nash_data.txt : observational data for demonstration problem<br> vTG_FG.m : the main subroutine<br> BaryL.m : auxiliary subroutine<br> vTG_FGprep.m : auxiliary subroutine (call before vTG_FG)<br> Lian_Smyth_Liu20.pdf : Paper to reference for description and testing of code.<br> The underlying theory is described in<em> Instability in Geophysical Flows,</em> by W.D. Smyth and J.C. Carpenter, Cambridge University Press: Available from Amazon and others.
DOI: 10.34740/kaggle/dsv/3581814
title: Mahanagar Yatayat Dataset
DOI: 10.25919/qpdt-vz47
title: Parkes observations for project P737 semester 2022APRS_02

description: The aim of this proposal is to carry out tests of the new backend instruments which cannot be carried out during standard maintenance periods. The scheduled time is used to measure beam shapes, determine polarisation calibration solutions and commission the National Facility observing modes for the new wide-band receiver.
DOI: 10.25345/c5cr5nh00
title: MassIVE MSV000089422 - Proteome Remodeling of the Eye Lens at 50 Years Identified with Data-Independent Acquisition
title: The eye lens is responsible for focusing and transmitting light to the retina. The lens does this in the absence of organelles yet maintains transparency for at least five decades before onset of age-related nuclear cataract (ARNC). It is hypothesized that oxidative stress contributes significantly to ARNC formation. It is additionally hypothesized that transparency is maintained by a microcirculation system (MCS) that delivers antioxidants to the lens nucleus and exports small molecule waste. Commonly used data-dependent acquisition (DDA) proteomics methods are hindered by the dynamic range of protein expression in the lens and provide limited context to age-related changes in the lens. In this study we utilized data-independent acquisition (DIA) mass spectrometry proteomics to analyze the urea insoluble, membrane protein fractions of 16 human lenses subdivided into three spatially distinct lens regions to characterize age-related changes, particularly concerning the lens MCS and oxidative stress response. In this pilot cohort, using the DIA approach, we measured 4,788 distinct protein groups, and 46,681 peptides, more than in any previous human lens DDA approach. Our results reveal age-related changes previously known in lens biology and expand on these findings, taking advantage of the rich dataset afforded by DIA mass spectrometry. Principally, we demonstrate that a significant proteome remodeling event occurs at approximately 50 years of age, resulting in metabolic preference for anaerobic glycolysis established with organelle degradation, decreased abundance of protein networks involved in calcium-dependent cell-cell contacts while retaining networks related to oxidative stress response. Further, we demonstrate the first identification of multiple antioxidant transporter proteins not previously shown in the human lens and describe their spatiotemporal and age-related abundance changes. Finally, we demonstrate that Aquaporin-5, among other proteins, is depleted with age. We suggest that the continued accumulation of each of these age-related outcomes in proteome remodeling contribute to decrease in fiber cell permeability and result in ARNC formation.
DOI: 10.5281/zenodo.6517064
title: triDNAlib: 3D fragment library of DNA trinucleotides

description: A library of <strong>3D structures of DNA trinucleotides</strong>, extracted from the PDB using the protNAff tool [1], in <strong>all-atom</strong> and <strong>coarse-grain</strong> [2] representations. The coordinates of the fragments are stored as numpy matrices. To convert them into PDB files, unzip the archive, enter it and run the command line: <em>bash scripts/convert_npy_pdb.sh</em> The PDB files will be created in ssDNA, both as multi-models and single-model files, for both all-atom ("aa") and coarse-grain ("r" for "reduced). If you face any error or have any question, please contact the authors. [1] https://github.com/isaureCdB/ProtNAff [2] Setny, Bahadur and Zacharias, BMC Bioinformatics. 2012. doi: 10.1186/1471-2105-13-228
DOI: 10.5281/zenodo.6517063
title: triDNAlib: 3D fragment library of DNA trinucleotides

description: A library of <strong>3D structures of DNA trinucleotides</strong>, extracted from the PDB using the protNAff tool [1], in <strong>all-atom</strong> and <strong>coarse-grain</strong> [2] representations. The coordinates of the fragments are stored as numpy matrices. To convert them into PDB files, unzip the archive, enter it and run the command line: <em>bash scripts/convert_npy_pdb.sh</em> The PDB files will be created in ssDNA, both as multi-models and single-model files, for both all-atom ("aa") and coarse-grain ("r" for "reduced). If you face any error or have any question, please contact the authors. [1] https://github.com/isaureCdB/ProtNAff [2] Setny, Bahadur and Zacharias, BMC Bioinformatics. 2012. doi: 10.1186/1471-2105-13-228
DOI: 10.5281/zenodo.4553738
title: Supporting data and code for: Insecticide resistance and fitness cost in Bemisia tabaci invasive and resident species in La Réunion Island

description: This is the second release of the final data and code for the article entitled "Insecticide resistance and fitness cost in Bemisia tabaci (Hemiptera: Aleyrodidae) invasive and resident species in La Réunion Island" accepted for publication in Pest Management Science. This is a minor release correcting a few typos, adding the final details for the article citation and adding a session info file to inform users about the R and packages versions used at the time of the release.
DOI: 10.5281/zenodo.3266422
title: Supporting data and code for: Insecticide resistance and fitness cost in Bemisia tabaci invasive and resident species in La Réunion Island

description: This is the second release of the final data and code for the article entitled "Insecticide resistance and fitness cost in Bemisia tabaci (Hemiptera: Aleyrodidae) invasive and resident species in La Réunion Island" accepted for publication in Pest Management Science. This is a minor release correcting a few typos, adding the final details for the article citation and adding a session info file to inform users about the R and packages versions used at the time of the release.
DOI: 10.17903/fk2/64d0jv
title: Διαδικασίες Ενσωμάτωσης των Νέων στην Αγορά Εργασίας: Η Περίπτωση των Αποφοίτων Κοινωνικών Επιστημών της Ανώτατης Εκπαίδευσης

description: Έρευνα με χρήση δομημένων ερωτηματολογίων σε αποφοίτους Πανεπιστημίου. Το δείγμα αποτέλεσαν οι απόφοιτοι, άνδρες και γυναίκες, των δύο τμημάτων που αποφοίτησαν κατά τα ακαδημαϊκά έτη 1990-91 και 1993-94. Η έρευνα πραγματοποιήθηκε το Μάιο του 2005.Οι ερωτήσεις που διατυπώθηκαν στο ερωτηματολόγιο αφορούν στην αντικειμενική διερεύνηση της εκπαιδευτικής και επαγγελματικής διαδρομής των αποφοίτων. Από τους ερωτηθέντες ζητήθηκε να απαντήσουν σε όλες τις ερωτήσεις με σοβαρότητα και σαφήνεια ώστε να καταγραφεί η προσωπική τους εμπειρία με αντικειμενικό τρόπο. Στην αρχική επικοινωνία μαζί τους οι απόφοιτοι ενημερώνονταν για τους στόχους τις έρευνας ώστε να είναι προετοιμασμένοι να ανταποκριθούν στο ερωτήματα που έθετε η έρευνα. Η προετοιμασία κρίθηκε απαραίτητη γιατί πολλά ερωτήματα της έρευνας αναφέρονταν στο παρελθόν αλλά και σε πρόσωπα του άμεσου συγγενικού περιβάλλοντος του αποφοίτου. Ως εκ τούτου η έρευνα αποτυπώνει: α) το χρονικό ορίζοντα της εκπαιδευτικής και επαγγελματικής διαδρομής από τότε που οι απόφοιτοι των δύο χρονικών περιόδων ολοκλήρωναν την δευτεροβάθμια εκπαίδευσή τους μέχρι την στιγμή της έρευνας, β) τα βασικά κοινωνικά και δημογραφικά χαρακτηριστικά της οικογένειας τους τότε και τώρα.
DOI: 10.5281/zenodo.3266914
title: Supporting code and data for: Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure

description: This is the first release of the updated code for the analyses of the related article published in Molecular Ecology.
DOI: 10.5281/zenodo.3266913
title: Supporting code and data for: Exploring the role of asexual multiplication in poplar rust epidemics: impact on diversity and genetic structure

description: This is the first release of the updated code for the analyses of the related article published in Molecular Ecology.
DOI: 10.5281/zenodo.4553728
title: Supporting data and code for: Monitoring systems for resistance to plant protection products across the world: Between redundancy and complementarity

description: This is the first release of the final data and code for the article accepted for publication in Pest Management Science journal. It contains all the necessary scripts to perform the data analysis and to produce the Figures. All the necessary data can be found in the 'data' folder.
DOI: 10.5281/zenodo.3723898
title: Supporting data and code for: Monitoring systems for resistance to plant protection products across the world: Between redundancy and complementarity

description: This is the first release of the final data and code for the article accepted for publication in Pest Management Science journal. It contains all the necessary scripts to perform the data analysis and to produce the Figures. All the necessary data can be found in the 'data' folder.
DOI: 10.5281/zenodo.4587270
title: Supporting data and code for: How varying parameters impact insecticide resistance bioassay: an example on the worldwide invasive pest Drosophila suzukii

description: This is the first release of the final data and code for the article published in PLOS ONE journal. It contains all the necessary scripts to perform the data analysis and to produce the Figures. All the necessary data can be found in the 'data' folder.
DOI: 10.5281/zenodo.2842939
title: Supporting data and code for: How varying parameters impact insecticide resistance bioassay: an example on the worldwide invasive pest Drosophila suzukii

description: This is the first release of the final data and code for the article published in PLOS ONE journal. It contains all the necessary scripts to perform the data analysis and to produce the Figures. All the necessary data can be found in the 'data' folder.
DOI: 10.5281/zenodo.6473030
title: Data and analysis scripts of "Predictability awareness rather than mere predictability enhances the perceptual benefits for targets in auditory rhythms over targets following temporal cues"

description: These are the data and the analysis scripts accompanying the publication "Predictability awareness rather than mere predictability enhances the perceptual benefits for targets in auditory rhythms over targets following temporal cues". Check the readMe for an instruction.
DOI: 10.5281/zenodo.6473029
title: Data and analysis scripts of "Predictability awareness rather than mere predictability enhances the perceptual benefits for targets in auditory rhythms over targets following temporal cues"

description: These are the data and the analysis scripts accompanying the publication "Predictability awareness rather than mere predictability enhances the perceptual benefits for targets in auditory rhythms over targets following temporal cues". Check the readMe for an instruction.
DOI: 10.21957/h81p-dy58
title: PRIMAVERA HighResMIP sea-ice albedo sensitivity experiment (1 of 2) with ECMWF-IFS-LR (cycle 43r1)
DOI: 10.5281/zenodo.2845404
title: Supporting data and code for: Investigation on the sensitivity of Plasmopara viticola to amisulbrom and ametoctradin in French vineyards using bioassays and molecular tools

description: This is a small modification of the first release of the final data and code for the article entitled "Investigation on the sensitivity of Plasmopara viticola to amisulbrom and ametoctradin in French vineyards using bioassays and molecular tools" accepted for publication in Pest Management Science.