cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5524245
title: Dataset to: The efficiency of retention measures in continuous-cover forestry for conserving epiphytic cryptogams: A case study on Abies alba

description: The file contains data used in the paper mentioned aboved. Abbreviations of variables, species etc. please see Table 1 and Appendix S5 in the publication, respectively. The variables dbh and ele (elevation) are already transformed. The sheets "Ordination_Epiphytes_spec" and "Ordination_Epiphytes_env" were also used for detecting significant associations of species to the tree types (HT vs. AT).
DOI: 10.34740/kaggle/dsv/2695457
title: 2021 World Population (updated daily)
DOI: 10.5517/ccdc.csd.cc2697pg
title: CCDC 2034675: Experimental Crystal Structure Determination

description: Related Article: C.L. Santana, D. K. Unruh, R. H. Groeneman|2020|CSD Communication|||
description: Related Article: C.L. Santana, J.D. Battle, D.K. Unruh, R.H. Groeneman|2021|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|77|111|doi:10.1107/S2053229621000590
DOI: 10.5517/ccdc.csd.cc27rfct
title: CCDC 2078096: Experimental Crystal Structure Determination

description: Related Article: Anna Inyutina, Daria Spiridonova, Dmitry Dar’in|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28805r
title: CCDC 2093063: Experimental Crystal Structure Determination

description: Related Article: Xiao-Hong Wei, Chun-Yuan Bai, Ai-Jun Wang, Qiao-Liang Feng, Lian-Biao Zhao, Ping Zhang, Zhen-Hua Li, Qiong Su, Yan-Bin Wang|2021|Org.Lett.|23|7100|doi:10.1021/acs.orglett.1c02504
DOI: 10.6084/m9.figshare.16783081
title: Supplementary Material for: Screening Novel Drug Candidates for Kidney Renal Clear Cell Carcinoma Treatment: A Study on Differentially Expressed Genes through the Connectivity Map Database

description: <b><i>Objective:</i></b> Kidney renal clear cell carcinoma (KIRC) is a common cancer with high morbidity and mortality in renal cancer. Thus, the transcriptome data of KIRC patients in The Cancer Genome Atlas (TCGA) database were analyzed and drug candidates for the treatment of KIRC were explored through the connectivity map (CMap) database. <b><i>Methods:</i></b> The transcriptome data of KIRC patients were downloaded from TCGA database, and KIRC-associated hub genes were screened out through differential analysis and protein-protein interaction (PPI) network analysis. Afterward, the CMap database was used to select drug candidates for KIRC treatment, and the drug-targeted genes were obtained through the STITCH database. A PPI network was constructed by combining drug-targeted genes with hub genes that affected the pathogenesis of KIRC to obtain final hub genes. Finally, combining hub genes and KIRC-associated hub genes, the pathways affected by drugs were explored by pathway enrichment analysis. <b><i>Results:</i></b> A total of 2,312 differentially expressed genes were found in patients, which were concentrated in immune cell activity, cytokine, and chemokine secretion pathways. Drug screening disclosed 5 drug candidates for KIRC treatment: fedratinib, Ly344864, geldanamycin, AS-605240, and luminespib. Based on drug-targeted genes and KIRC-associated hub genes, 16 hub genes were screened out. Pathway enrichment analysis revealed that drugs mainly affected pathways such as neuroactive ligand pathways, cell adhesion, and chemokines. <b><i>Conclusion:</i></b> The above results indicated that fedratinib, LY 344864, geldanamycin, AS-605240, and luminespib could be used as candidates for KIRC therapy. The findings from this study will make contributions to the treatment of KIRC in the future.
DOI: 10.21227/fj69-wv35
title: MATLAB environment for Time Complexity Estimation script

description: This MATLAB scripts perform time complexity estimation of three implemented algorithms.
DOI: 10.5281/zenodo.5220908
title: Supplementary material from "Seasonality of salmonid parasites from flow-through aquaculture in northern Germany: Emphasis on pathogenicity of Diplostomum spp. metacercaria "

description: Supplementary material from "Seasonality of salmonid parasites from flow-through aquaculture in northern Germany: Emphasis on pathogenicity of Diplostomum spp. metacercaria "
DOI: 10.5281/zenodo.5220907
title: Supplementary material from "Seasonality of salmonid parasites from flow-through aquaculture in northern Germany: Emphasis on pathogenicity of Diplostomum spp. metacercaria "

description: Supplementary material from "Seasonality of salmonid parasites from flow-through aquaculture in northern Germany: Emphasis on pathogenicity of Diplostomum spp. metacercaria "
DOI: 10.6084/m9.figshare.16783087
title: counties.json

description: map.
DOI: 10.5281/zenodo.5336853
title: Canopy and understory tree guilds respond differently to the environment in an Indian rainforest

description: Questions. Changes in the functional composition of tree communities along resource availability gradients have received attention, but it is unclear whether or not understory and canopy guilds respond similarly to different light, biomechanical, and hydraulic constraints. Location. An anthropically-undisturbed, old-growth wet evergreen Dipterocarp forest plot located in Karnataka State, India. Methods. We measured leaf and wood traits of 89 tree species representing 99% of all individuals in a 10 ha permanent plot with varying topographic and canopy conditions inferred from LiDAR data. We assigned tree species to guilds of canopy and understory species and assessed the variation of the guild weighted means of functional trait values with canopy height and topography. Results. The functional trait space did not differ between canopy and understory tree species. However, environmental filtering led to significantly different functional composition of canopy and understory guild assemblages. Furthermore, they responded differently along environmental gradients related to water, nutrients, light, and wind exposure. For example, the canopy guild responded to wind exposure while the understory guild did not. Conclusions. The pools of understory and canopy species are functionally similar. However, fine-scale environmental heterogeneity impacts differently on these two guilds, generating striking differences in functional composition between understory and canopy guild assemblages. Accounting for vertical guilds improves our understanding of forest communities’ assembly processes.
DOI: 10.5281/zenodo.5336852
title: Canopy and understory tree guilds respond differently to the environment in an Indian rainforest

description: Questions. Changes in the functional composition of tree communities along resource availability gradients have received attention, but it is unclear whether or not understory and canopy guilds respond similarly to different light, biomechanical, and hydraulic constraints. Location. An anthropically-undisturbed, old-growth wet evergreen Dipterocarp forest plot located in Karnataka State, India. Methods. We measured leaf and wood traits of 89 tree species representing 99% of all individuals in a 10 ha permanent plot with varying topographic and canopy conditions inferred from LiDAR data. We assigned tree species to guilds of canopy and understory species and assessed the variation of the guild weighted means of functional trait values with canopy height and topography. Results. The functional trait space did not differ between canopy and understory tree species. However, environmental filtering led to significantly different functional composition of canopy and understory guild assemblages. Furthermore, they responded differently along environmental gradients related to water, nutrients, light, and wind exposure. For example, the canopy guild responded to wind exposure while the understory guild did not. Conclusions. The pools of understory and canopy species are functionally similar. However, fine-scale environmental heterogeneity impacts differently on these two guilds, generating striking differences in functional composition between understory and canopy guild assemblages. Accounting for vertical guilds improves our understanding of forest communities’ assembly processes.
DOI: 10.23644/uu.15132465
title: Data and scripts used for single-particle mass analysis for the manuscript "Single-particle mass analysis of intact ribosomes by mass photometry and Orbitrap-based charge detection mass spectrometry"

description: Contains data and example of data processing script used for generation of the figures for the manuscript "Single-particle mass analysis of intact ribosomes by mass photometry and Orbitrap-based charge detection mass spectrometry"<br>
DOI: 10.5281/zenodo.5562198
title: Supporting information of paper "Direct Laser Writing of Liquid Crystal Elastomers Oriented by a Horizontal Electric Field"

description: This dataset contains the <em>underlying data </em>and the <em>extended data </em>for the paper “Direct Laser Writing of Liquid Crystal Elastomers Oriented by a Horizontal Electric Field”, submitted for consideration and open review in Open Research Europe. In the follow the description of the files is reported: <strong>Underlying_data_Surce_Images.zip</strong> It contains the source original microscopy image files used for assembling final paper Figures (1-5), enclosed in the main text. List and pictures' information are reported in the file "Source Picture Description.txt" included in the zip. <strong>SIVideo_LCAlignment.avi </strong>- [Supporting VideoZ1] showing the response of the unpolymerized mesogens to an electric field of 1.7 V/µm <strong>SIVideo_NailActuation.wmv</strong> - [Supporting VideoZ2] showing the thermally activated actuation of a LCE nail microstructure upon several rt-75 °C cycles. <strong>SIVideo_SimulationCube.gif</strong> - [Supporting VideoZ3] Video showing a simulation of the actuation of a LCE microcube upon heating. <strong>SIVideo_SimuulationNail.gif</strong> - [Supporting VideoZ4] - Video showing a simulation of the actuation of a LCE micronail upon heating. <strong>ImageZ1.png - </strong>[Supporting Figure Z1] Simulation of the distribution of the electric field generated by flat electrode, view along the plane (cross section) with magnification of the central part of the working field. <strong>ImageZ2.png</strong> - [Supporting Figure Z2] - Photographs and thermal images of a LCE film obtained using a resin formulation identical to that employed in DLW on identical substrates that show the thermal response. Top: photograph of LCE films obtained by UV polymerization of a 7:3 LC-MA:LC-DA mixture over interdigitated flat ITO electrodes with an applied DC voltage. Upon heating with an infrared lamp (right column) the film bends and shortens. Middle: images acquired with a thermocamera highlighting the actuation temperature. Bottom: control LCE film polymerized as casted (without electric field). <strong>Simulations.zip - </strong>Comsol (Version 5.6) source simulation files for LCE microcube and LCE micronail upon heating, and for the electric field electric generated by flat electrode in experimental conditions. Complete Report file in PDF is also available, containing all the parameters and equations used for simulation. Finally, the simulation results are provided as text .csv files. <strong>Files_Blender_LCE.zip</strong> - Blender (Version 2.93) source file (“.blend”) for microstructure fabrication and generated surface “.stl” files, including cube, nail, cantilever and pyramid geometries.
DOI: 10.17632/2k77vxszpb.2
title: Modeling parallel robots (PKM) with complex loops, and a Delta robot example. Code suplement to https://doi.org/10.1016/j.mechmachtheory.2021.104549

description: This is the Mathematica and Matlab code implementation of the modeling formulation introduced in the article "Dynamics of Parallel Manipulators with Hybrid Complex Limbs -- Modular Modeling and Parallel Computing" 
https://doi.org/10.1016/j.mechmachtheory.2021.104549
DOI: 10.5281/zenodo.5562242
title: The Bomber's Baedeker. A Guide to the Economic Importance of German Towns and Cities

description: The Bomber's Baedeker The two-volume printed work “The Bomber's Baedeker. A Guide to the Economic Importance of German Towns and Cities” was produced during the Second World War by the British Foreign Office and the Ministry of Economic Warfare. It lists towns and cities of the German Reich with more than a thousand inhabitants and information on their war-related infrastructure, industrial and production facilities. Only four verified copies still exist worldwide and none of them have been accessible for scholarly digital use until now. “The Bomber's Baedeker” was re-discovered in 2019 in the library of the Leibniz Institute of European History (IEG), digitised in cooperation with the Mainz University Library and made accessible and processed by the Digital Historical Research | DH Lab and the Darmstadt University of Applied Sciences as part of a cross-institutional cooperation (including courses with students) so that “The Bomber's Baedeker” can now be used, analysed and processed as an open, machine-readable data source in compliance with FAIR principles.
description: More information and scripts used to extract the data can be found here: https://github.com/ieg-dhr/bombers_baedeker
DOI: 10.21227/g7ph-j072
title: Code for the Decentralized Model-free Loss Minimization in Distribution Grids with the Use of Inverters

description: Nowadays, distribution grids are undergoing massivepenetration of renewable energy sources (RESs), especiallyrooftop photovoltaic solar panels (PVs) and small wind turbines(WTs), which lead to a greater ratio of fluctuating generation.As a result, the inherited problems of distribution grids, suchas poor voltage profile and high power losses, become evenworse. To operate a grid in the optimal mode, we proposea communication- and model-free algorithm which exploitsthe capabilities of the inverters to control the reactive poweroutput. While inverters are already installed in the system forconnecting PVs, the inclusion of our algorithm in the inverters’software allows minimizing active power losses in the grid. Weset a rigorous mathematical background for the active powerloss minimization problem in distribution systems. Further, weanalytically evaluate the approaches from the previous works.Moreover, the mathematical formulation of the optimum solutionfor power loss minimization is derived, and a communication-freealgorithm is designed. Finally, we demonstrate the performanceof the algorithm on a 141-bus radial system with the randomplacing of the generating units and provide the analysis of thegradual increase of distributed generation and its influence onthe choice of the optimization algorithm.
DOI: 10.6084/m9.figshare.16783120
title: Supplementary_data.xlsx

description: Supporting data for the publication Population size impacts host-pathogen coevolution. Use this file as an input to run R code provided to reproduce figures and statistical analysis<br>
DOI: 10.6084/m9.figshare.16783120.v1
title: Supplementary_data.xlsx

description: Supporting data for the publication Population size impacts host-pathogen coevolution. Use this file as an input to run R code provided to reproduce figures and statistical analysis<br>
DOI: 10.17638/datacat.liverpool.ac.uk/1157
title: Element selection for crystalline inorganic solid discovery guided by unsupervised machine learning of experimentally explored chemistry
DOI: 10.5519/qd.a2g1592p
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (24 records)
DOI: 10.17179/excli2021-4091/supplementary_data
title: Synergistic effects of metformin and curcumin on cytotoxicity of chemotherapy drugs using a gastric cancer cell line model

description: Gastric cancer has a weak prognosis and its usual treatments depend on surgery and chemotherapy. These treatments suffer from some drawbacks such as high rates of local recurrence and metastasis, low survival rates, and significantly decreased life quality. Therefore, new therapeutic methods for improved gastric cancer care with minimal side effects seem necessary. Currently, combinatorial treatments for cancer are preferred and recently, metformin (Met) and curcumin (Cur) have been interesting options for this type of therapy. The aim of the present study was to investigate anticancer effects of metformin and curcumin in both single and combinatorial treatment forms on AGS gastric cancer cell line. In comparison to single treatments with each substance, the results of co-treatments with metformin and curcumin indicated synergistic inhibitory effects on cell viability, wound healing, cell migration and invasion, and primary tumor formation. To determine the selective effect of combination of “Met + Cur” on cancerous cells, very low doses of 8 anticancer drugs (cisplatin, carboplatin, oxaliplatin, epirubicin, doxorubicin, docetaxel, paclitaxel, and methotrexate) used in MTT assay were comparatively tested on AGS cancer cells and normal HDF cells for 48 and 72 hours. The results indicated that the combination of “Met + Cur” significantly increased cytotoxic effects of all anticancer drugs of AGS cells. It is while in normal HDF cells, combination of “Met + Cur” along with anticancer drugs had no effect. This can be inferred as selectively additive effect.
description: EXCLI Journal; 20:Doc1488; ISSN 1611-2156
DOI: 10.5281/zenodo.5548622
title: ASVspoof2019LA-Sim: Augmented Dataset for An Empirical Study on Channel Effects for Synthetic Voice Spoofing Countermeasure Systems

description: This is the dataset we augmented to study the channel effects for anti-spoofing. For more details, please refer to our Interspeech 2021 paper: An Empirical Study on Channel Effects for Synthetic Voice Spoofing Countermeasure Systems. Proceeding: https://www.isca-speech.org/archive/interspeech_2021/zhang21ea_interspeech.html Arxiv: https://arxiv.org/pdf/2104.01320.pdf Code: https://github.com/yzyouzhang/Empirical-Channel-CM Contact: you.zhang@rochester.edu Version 1.0 only contains the training and the development set. We will upload evaluation set in further versions. Stay tuned. To extract the files, please use the following commands: <pre><code class="language-bash">cat eval.tar.gz-part* &gt; eval.tar.gz tar -xvzf *.tar.gz</code></pre> After concatenation, to make sure the download is complete, you can check with the following: <pre><code>md5sum *.tar.gz 15dea7d28b126994bb6b159778f706af dev.tar.gz 0615052b34ca6c7f58505eaa8647844f eval.tar.gz 3058dd9d407f3c9ae697acca8c34a6c3 train.tar.gz</code></pre>
DOI: 10.34740/kaggle/dsv/2695689
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.16783279
title: KASP_scores

description: Raw data belonging to the paper 'Genetic and morphological data demonstrate hybridization and backcrossing in a pair of salamanders at the far end of the speciation continuum' by Jan W. Arntzen, Robert Jehle & Ben Wielstra, published in Evolutionary Applications. Acceptance date: 01/10/2021.
DOI: 10.6084/m9.figshare.16783279.v1
title: KASP_scores

description: Raw data belonging to the paper 'Genetic and morphological data demonstrate hybridization and backcrossing in a pair of salamanders at the far end of the speciation continuum' by Jan W. Arntzen, Robert Jehle & Ben Wielstra, published in Evolutionary Applications. Acceptance date: 01/10/2021.
DOI: 10.5281/zenodo.5562293
title: Two Couzin Model Datasets

description: Couzin Model Datasets from the Master Thesis "Investigating models of collective behavior via input attribution" written by Pascal Müller at the FU Berlin.
DOI: 10.5281/zenodo.5562292
title: Two Couzin Model Datasets

description: Couzin Model Datasets from the Master Thesis "Investigating models of collective behavior via input attribution" written by Pascal Müller at the FU Berlin.
DOI: 10.5517/ccdc.csd.cc24hqjx
title: CCDC 1981319: Experimental Crystal Structure Determination

description: Related Article: Hiroki Sato, Tadashi Tsukamoto, Hiromitsu Sogawa, Shigeki Kuwata, Toshikazu Takata|2021|New J.Chem.|45|18282|doi:10.1039/D0NJ06133F
DOI: 10.5517/ccdc.csd.cc24hqky
title: CCDC 1981320: Experimental Crystal Structure Determination

description: Related Article: Hiroki Sato, Tadashi Tsukamoto, Hiromitsu Sogawa, Shigeki Kuwata, Toshikazu Takata|2021|New J.Chem.|45|18282|doi:10.1039/D0NJ06133F
DOI: 10.6084/m9.figshare.20070116
title: Direct observation of geometric and sliding ferroelectricity in amphidynamic crystal

description: SourceData for Direct observation of geometric and sliding ferroelectricity in amphidynamic crystal
DOI: 10.6084/m9.figshare.20070116.v1
title: Direct observation of geometric and sliding ferroelectricity in amphidynamic crystal

description: SourceData for Direct observation of geometric and sliding ferroelectricity in amphidynamic crystal
DOI: 10.6084/m9.figshare.20070209
title: Data Calcitriol & HIV-1 Transfer

description: Data
DOI: 10.6084/m9.figshare.20070209.v1
title: Data Calcitriol & HIV-1 Transfer

description: Data
DOI: 10.6084/m9.figshare.12264401.v1
title: The BETA database

description: The brain-computer interface (BCI) provides an alternative means to communicate and it has sparked growing interest in the past two decades. Specifically, for Steady-State Visual Evoked Potential (SSVEP) based BCI, marked improvement has been made in the frequency recognition method and data sharing. However, the number of pubic databases is still limited in this field. Therefore, we present a \textbf{BE}nchmark database \textbf{T}owards BCI \textbf{A}pplication (BETA) in the study. The BETA database is composed of 64-channel Electroencephalogram (EEG) data of 70 subjects performing a 40-target cued-spelling task. The design and the acquisition of the BETA is in pursuit of meeting the demand from real-world applications and it can be used as a test-bed for these scenarios. We validate the database by a series of analyses and conduct the classification analysis of eleven frequency recognition methods on BETA. We recommend to use the metric of wide-band signal-to-noise ratio (SNR) and BCI quotient to characterize the SSVEP at the single-trial and population levels, respectively. The BETA database has an alternative download website link of http://bci.med.tsinghua.edu.cn/download.html.
DOI: 10.6084/m9.figshare.13299158.v1
title: FS 1-Meena etal-CellReports 2022

description: Intestinal epithelial tight junction disruption is a primary contributing factor in alcohol-associated endotoxemia, systemic inflammation, and multiple organ damage. Ethanol and acetaldehyde disrupt tight junctions by elevating intracellular Ca2+. Here we identify TRPV6, a Ca2+-permeable channel, as responsible for alcohol-induced elevation of intracellular Ca2+, intestinal barrier dysfunction, and systemic inflammation. Ethanol and acetaldehyde elicit TRPV6 ionic currents in Caco-2 cells. Studies in Caco-2 cell monolayers and mouse intestinal organoids show that TRPV6 deficiency or inhibition attenuates ethanol and acetaldehyde-induced Ca2+ influx, tight junction disruption, and barrier dysfunction. Moreover, <em>Trpv6-/-</em> mice are resistant to alcohol-induced intestinal barrier dysfunction. Photoaffinity labeling of 3-Azibutanol identifies a histidine as a potential alcohol-binding site in TRPV6. The substitution of this histidine, and a nearby arginine, reduces ethanol-activated currents. Our findings reveal that TRPV6 is required for alcohol-induced gut barrier dysfunction and inflammation. Molecules that decrease TRPV6 function have the potential to attenuate alcohol-associated tissue injury.