cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27129096.v1
title: <b>Appendix for the article titled</b> <b><i>An Analysis of the Themes and Speech Acts in the Most Recent Inaugural Speeches</i></b><b><i>by Leaders of the Countries with English as an Official Language.</i></b>

description: <b>Title Article: </b><b><i>An Analysis of the Themes and Speech Acts in the Most Recent Inaugural Speeches </i></b><b><i>by Leaders of the Countries with English as an Official Language.</i></b><b>Appendix</b><b>Table 1</b><i>All Main Themes, Sub-Themes, and Their Description</i><b>Table 2 </b><i>The Complete Main Themes and Sub-Themes across 10 Countries</i>
DOI: 10.17632/vr8c9n2tkn
title: EDFund- Elsevier funding entity linking dataset

description: Automatic extraction of funding information from academic articles adds significant value to industry and research communities, such as tracking research outcomes by funding organizations, profiling researchers and universities based on the received funding, and supporting open access policies.
This dataset collected by Elsevier in 2019. Sentences talking about the funding information are extracted from 30000 scientific articles. Name of organisation which financially supported the research is highlighted and linked to Crossref Taxonomy.  Each document is annotated by two human and harmonized by an independent SME. 
For more information please read our paper "Find the Funding: Entity Linking with Incomplete Funding Knowledge Bases" presented in  COLING2022.
In addition to EDFund, we also release ELFund. This dataset only includes the sentences which have been classified as positive by our sentence classifier, as explained in the aforementioned paper.

ELFund:
   #Articles:  53864
   #Links:     177111
   NILs%:    19.23%
EDFund:
   #Articles:  53243
   #Links:     172031
   NILs%:    18.95%

- We thank Ramadurai Petchiappan and Georgios Cheirmpos for their assistance in preparing the 2nd version of the datasets.
DOI: 10.6084/m9.figshare.14604696.v1
title: Supplementary Material for: Evaluation of Spin in the Abstracts of Systematic Reviews and Meta-Analyses of Atopic Dermatitis Treatments and Interventions

description: <b><i>Background:</i></b> Spin – the misrepresentation of a study’s results – has been identified in abstracts of studies focused on a variety of disorders from multiple fields of medicine. <b><i>Objectives:</i></b> This study’s primary objective was to evaluate the abstracts of systematic reviews and meta-analyses focused on the treatment of atopic dermatitis for the nine most severe forms of spin. <b><i>Methods:</i></b> We systematically searched Embase and MEDLINE for systematic reviews of atopic dermatitis therapies. Screening and data extraction occurred in a masked, duplicate fashion. Each included study was evaluated for the nine most severe types of spin and other study characteristics. <b><i>Results:</i></b> Our searches retrieved 2,456 studies, of which 113 were included for data extraction. Spin was found in 74.3% of our included studies (84/113). Spin type 6 occurred most frequently (68/113, 60.2%). Spin types 1, 2, and 9 were not identified. All industry-funded systematic reviews contained spin in their abstract. The presence of spin was not associated with any specific study characteristics, including the methodological quality of the study. <b><i>Conclusions:</i></b> Severe forms of spin were found in the majority of abstracts for systematic reviews of atopic dermatitis treatments. Steps should be taken to prevent spin to improve the quality of reporting in abstracts.
DOI: 10.6084/m9.figshare.1540811.v1
title: Movement want_craving_SCALE data_CFA Master from Todd_444 participants_FEB 25 2014.sav

description: data for the CFA posted on Sept 13, 2015
DOI: 10.17632/b46bjcdtmd
title: Satellite tracking data of young spotted seals (Phoca largha) from Peter the Great Bay

description: Three young spotted seals (Phoca largha) were tagged on May 18–19, 2017 with ARGOS satellite tags SPOT-293A (Wildlife Computers, Inc., USA). Fieldwork was conducted in the Rimsky-Korsakov Archipelago located in the central part of Peter the Great Gulf, Russia (42°38ʹ–42°34ʹ N, 131°21ʹ–131°31ʹ E). The seals were captured at their costal haul-out sites using a hoop net. The tags were attached to the top of the head of each seal using special glue. The sex and age of each captured individual were determined by visual examination and by such characteristics as body length and size of claws. The tagged spotted seals proved to be underyearling male (Platform ID No. 148660), underyearling female (Platform ID No. 94842), and yearling male (Platform ID No. 148661). The study was conducted under the Joint Committee on Environmental Cooperation between the Government of the Republic of Korea and the Government of the Russian Federation (K-R-10-02, Korea-Russia bilateral cooperation on the conservation of pinnipeds). All procedures with animals were permitted by the Federal Agency for Fisheries of the Ministry of Agriculture of the Russian Federation and approved by the Pacific Fisheries Research Center.
DOI: 10.17632/cp8bgdv63m
title: LINF_150013700

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kmc2tnb5v6
title: Variable Length Values Inventory Scale Development and Use

description: This dataset includes 5 samples used in scale development of the VLVI, plus a study using the VLVI to examine the impact of values on team performance.
DOI: 10.17608/k6.auckland.22786718.v1
title: Matlab scripts

description: These data accompany the following manuscript: Wilson, L., Constantine, R., Pine, M.K. Farcas, A. Radford, C.A. Impact of small boat sound on the listening space of Pempheris adspersa, Forsterygion lapillum, Alpheus richardsoni and Ovalipes catharus. Sci Rep 13, 7007 (2023). https://doi.org/10.1038/s41598-023-33684-0 <br> Please note that the functions find_closest4_fast.m, linterp.m, linterp2d.m, and extract_rec_value_update.m were provided by Charlotte Findlay and Adrian Farcas. Charlotte Findlay can be contacted at charlotte_findlay@hotmail.co.uk or charlotte.findlay@bio.au.dk. <br> The following required functions are available from the Matlab file exchange: Jonathan Sullivan (2023). Automatic Map Scale Generation (https://www.mathworks.com/matlabcentral/fileexchange/33545-automatic-map-scale-generation), MATLAB Central File Exchange. Retrieved April 28, 2023. Rafael Palacios (2023). deg2utm (https://www.mathworks.com/matlabcentral/fileexchange/10915-deg2utm), MATLAB Central File Exchange. Retrieved April 28, 2023. Rafael Palacios (2023). utm2deg (https://www.mathworks.com/matlabcentral/fileexchange/10914-utm2deg), MATLAB Central File Exchange. Retrieved April 28, 2023. <br> The required function PG_DFT.m accompanies the folllowing manuscript: Merchant, N. D., Fristrup, K. M., Johnson, M. P., Tyack, P. L., Witt, M. J., Blondel, P., & Parks, S. E. (2015). Measuring acoustic habitats. Methods in Ecology and Evolution, 6, 257–265. https://doi.org/10.1111/2041-210X.12330 <br> Audiogram data can be obtained from the cited literature. <br> Please contact me with any questions: lwil634@aucklanduni.ac.nz.
DOI: 10.6084/m9.figshare.15657666.v1
title: Supplementary Material for: Natural Course and Prognostic Factors of Immediate-Type Peanut Allergy in Children

description: <b><i>Background:</i></b> Predicting food allergy resolution is essential to minimize the number of restricted foods in children. However, there have been no studies on the natural history of peanut allergy (PA) in Korea. <b><i>Objective:</i></b> This study aimed to evaluate the natural course and prognostic factors of immediate-type PA in children till the age of 10 years. <b><i>Methods:</i></b> We retrospectively collected data of 122 children who developed PA before 60 months of age from 3 tertiary hospitals in Korea. Diagnosis and resolution of PA was defined as an oral food challenge test or a convincing history of symptoms within 2 h after peanut ingestion. The prognostic factors for resolution of PA were identified using the Cox proportional hazard model. <b><i>Results:</i></b> The median (interquartile range) age at diagnosis was 2.0 (1.3–3.0) years. Among the 122 children, PA resolved in 18 (14.8%) children. The level of peanut-specific IgE (sIgE) at diagnosis in the persistence group was significantly higher than that in the resolution group (<i>p</i> = 0.026). The probabilities of resolution of PA were 10.3% and 32.8% at the ages of 6 and 10 years, respectively. A peanut-sIgE level ≥1 kU/L at diagnosis was significantly associated with persistent PA (hazard ratio, 5.99; 95% confidence interval, 1.89–18.87). <b><i>Conclusions:</i></b> Only 10.3% of our patients had a probability of developing spontaneous resolution of PA by 6 years of age. Peanut-sIgE levels ≥1 kU/L at diagnosis were associated with the persistence of PA.
DOI: 10.17632/ggt4f4dr85
title: Assessments of Lung Nodules by an Artificial Intelligence Chatbot Using Longitudinal Computed Tomography Images

description: This open-access dataset supports the study "Assessments of Lung Nodules by an Artificial Intelligence Chatbot Using Longitudinal Computed Tomography Images," allowing readers to reproduce the findings. The dataset comprises follow-up CT scan videos from patients within the National Lung Screening Trial (NLST) dataset and the local dataset. Each patient's videos are labeled as "1.MP4," "2.MP4," and "3.MP4." The compressed file "NLST_100_patients_follow-up_CT_mp4.zip" contains these videos of patients from the NLST dataset formatted for analysis with the GPT-4o. The compressed file "Local_training_20_patients_follow-up_CT_mp4.zip" contains these videos of patients from the local dataset formatted for analysis with the GPT-4o. Patient information, including malignancy status, nodule size, and location, is provided in the "NLST_100_patients_follow-up_information.csv" and the "Local_training_20_patients_follow-up_information.xlsx" files. The NLST Excel includes the original NLST radiologist assessments for margin (labeled as "Feature_margin_CT_report") and predominant attenuation (labeled as "Feature_Predominant attenuation_CT_report"). GPT-4o predictions for these features are listed in the columns "Feature_margin_GPT_report" and "Feature_Predominant attenuation_GPT_report," respectively.
DOI: 10.6084/m9.figshare.19519225.v1
title: Supplementary Material for: Identifying the Interaction of the Brain and the Pituitary in Social- and Reproductive- State of Tilapia by Transcriptome Analyses

description: Introduction: As in all vertebrates, reproduction in fish is regulated by GnRH control on gonadotrophic hormones (GtH) activity. However, the neuroendocrine factors that promote GnRH and GtH activity are unknown. In Nile tilapia (Oreochromis niloticus), sexual activity and reproduction ability depend on social rank; only dominant males and females reproduce. Here, this characteristic of dominant fish allows us to compare brain and pituitary gene expression in animals that do and do not reproduce, aiming to reveal mechanisms that regulate reproduction. Methods: an extensive transcriptome analysis was performed, combining two sets of transcriptomes: a novel whole-brain and pituitary transcriptome of established dominant and subordinate males, together with a cell-specific transcriptome of LH and FSH cells. Pituitary incubation assay validated the direct effect of steroid application on chosen genes and GtH secretion. Results: in most dominant fish, as determined behaviorally, the gonadosomatic index was higher than in subordinate fish, and the leading upregulated pituitary genes were those coding for GtHs. In the brain, various neuropeptide genes, including isotocin, cholecystokinin, and MCH, were upregulated; these may be related to reproductive status through effects on behavior and feeding. In a STRING network analysis combining the two transcriptome sets, brain aromatase, highly expressed in LH cells, is the most central gene with the highest number of connections. In the pituitary incubation assay, testosterone and estradiol increased the secretion of LH and specific gene transcription. Conclusions: the close correlation between behavioral dominance and reproductive capacity in tilapia allows unraveling novel genes that may regulate the HPG axis, highlighting aromatase as the main factor affecting the brain and pituitary in maintaining a sexually active organism.
DOI: 10.6084/m9.figshare.27947859.v1
title: Mistrovství světa v plavání - 10 km ženy.pdf

description: Tento soubor obsahuje analýzu dat ze závodu na 10 km žen ve volné vodě. Měřené úseky při závodě.
DOI: 10.17632/fmpf798zcn
title: Comprehensive Herb Species Dataset: Leveraging Deep Learning for Accurate Identification and Classification

description: 1. Herbs hold significant value across various sectors, including traditional medicine, culinary arts, and cosmetics, due to their unique properties and health benefits. However, accurately identifying different herb species can be challenging. The Herb Species Dataset is designed to aid researchers, horticulturists, and machine learning professionals in identifying and categorizing various herb species. This dataset comprises high-resolution images of herb leaves, showcasing both different species and various conditions. It includes several common herb species such as Azadirachta indica (Neem), Centella Asiatica (Gotu Kola), Coriandrum sativum (Coriander), Ocimum sanctum (Holy Basil), and Cinnamomum tamala (Indian Bay Leaf). Extensive annotations are provided for each image, offering detailed information regarding the species and condition of the leaves, thus enabling accurate and dependable model training and validation. Furthermore, the dataset is enhanced with metadata documenting the geographical locations and environmental conditions at the time of image capture. This contextual data can improve the precision of predictive models and is essential for comprehending the factors influencing herb identification.
2. These days, deep learning and computer vision techniques hold significant promise for handling classification and detection tasks, including herb species identification. Leveraging these technologies can significantly improve the accuracy and efficiency of such tasks.
3. A thorough dataset for herb species identification is presented to develop deep learning methods. This dataset's classifications were created in cooperation with a subject matter expert from a botanical institute. The expert's involvement ensures that the classifications are accurate and reliable, providing a solid foundation for model development.
4. A total of 2,500 images of the five herb species were gathered from various locations. To enhance the number of data points, 30,000 augmented images were created from these original images by applying flipping, width shifting, height shifting, brightening, rotating, shearing, and zooming. This extensive augmentation process ensures that the dataset is robust and capable of supporting the development of highly accurate predictive models.
DOI: 10.17632/g2x24jfg9p
title: Neutrophil senescence imparts sexual dimorphism in cancer

description: Sex disparities is epidemiologically linked to non-reproductive cancer exampled by the difference of bladder cancer incidence, prognosis and mobility between sexes. In the past, great attention has been paid to the effectors of sex chromosome associated genes and hormones, yet how the intrinsic microbiome difference between the sexes orchestrates immune system to influence the sex disparities of tumors remains unclear. Here, we integrated cross-species single-cell RNA sequencing (scRNA-seq) data of human and mouse bladder tumor-infiltrating immune cells and identified a lipocalin-2+ (LCN2+) senescence-like neutrophil (LSLN) subpopulation that exclusively present in the male tumor microenvironment, and predict a poor prognosis for male patients with bladder cancer. By selective depletion of this senescence-like neutrophils, we demonstrate that LSLNs exert a potent immunosuppressive function to impair T cell activity, and thereby limiting anti-tumor immunity. More importantly, the differently enriched LSLNs between sexes was attributed to a gut anaerobic bacterium, Alistipes shahii, which populates in females rather than males. We show that A. shahii-associated metabolite lurasidone directly target LCN2 in LSLNs. By freeing Fe2+, lurasidone induced ferroptosis; thus, eliminating this neutrophil subset and promoting antitumor immunity in females. While males lacking A. shahii and its associated metabolite lurasidone led to the survival of LSLNs. Together, our findings unveil a novel mechanism involving the microbiota-lurasidone-LCN2 circuit, which operates independently of sex hormones and chromosomes, contributing to the sexual dimorphism in bladder cancer. Importantly, these findings underscore the therapeutic potential of lurasidone, an FDA-approved drug, for male cancer patients.
DOI: 10.6084/m9.figshare.24707283.v1
title: Alignment and tree files for Russula subsection Xerampelinae

description: This includes the alignments and phylogenies of Russula subsection Xerampelinae from Noffsinger et al. (in press). All files are in nexus format and the phylogeny is included in brackets below each alignment.
DOI: 10.17632/rp97rx2dgr
title: Achieving Multi-modal Brain Disease Diagnosis Performance Using Only Single-Modality Images Through Generative AI

description: This file contains two folders. One contains part of the used data of multiple datasets for demonstration purpose. One contains the pre-trained models. How to use the data and models can refer to https://github.com/sunkg/Classification
DOI: 10.6084/m9.figshare.25422388.v1
title: train test data

description: This package contains the training data set as well as the test data set。
DOI: 10.6084/m9.figshare.28601366.v1
title: Figure S1

description: Raw dataset
DOI: 10.17632/vb47jvyv6h
title: Merkel Cell Carcinoma: Epidemiology, Disease Presentation, and Current Clinical Practice Outcomes

description: Supplementary material for the manuscript titled "Merkel Cell Carcinoma: Epidemiology, Disease Presentation, and Current Clinical Practice Outcomes"
DOI: 10.17632/jmch3jhmwn
title: Perinatal care clinical data and archetypes

description: Perinatal care clinical data and archetypes
DOI: 10.6084/m9.figshare.17111312.v1
title: Longitudinal investigations of anatomical and morphological development of gastrointestinal tract in goats from colostrum to post-weaning

description: The data describes the morphological development of the digestive tract from birth until post-weaning.
DOI: 10.17632/38c273kg8v
title: Data for publication

description: The data is captured; Household characteristics, Institutional characteristics, Perception and knowledge of climate change, Types of Climate information, Sources of information, Climate information usefulness and relevancy, Use climate information to inform farming decision-making, Main Livelihood activity and Assets, Perceptions of climate-related risk, Farmers perceptions of the impact of climate change, Farm adaptation strategies, Perception of the efficacy adaptation strategies, Economic impact of farm level adaptation strategies, Social impact of farm level adaptation strategies, Environmental impact of farm level adaptation strategies, Constraints to climate risk adaptation, and Climate variables
DOI: 10.17632/pjz7nvryy3
title: Delayed differentiation in chemical supply chains

description: Mass customization is a significant trend in modern production. In the production of miscible products (continuous production), implementing delayed differentiation is difficult at the factory level, as opposed to discrete production (production of objects). To make such a supply chain smart, a transformation must be carried out simultaneously at different levels. Reverse Blending was designed to delay the differentiation of fertilizers by performing it, through a blending process, in small blending units located in agricultural areas, which already exist in some regions. Without going back on the detailed positioning of the Reverse Blending approach in the scientific literature, this paper aims to study some of its managerial implications, based on four case studies, showing that smart supply chain may be possible in continuous production to provide tailor-made products if large diversity is needed.
DOI: 10.17632/kcwwktkd85
title: Net primary production and ecosystem carbon flux of Brazilian tropical savanna ecosystems from eddy covariance and inventory methods

description: Dataset contains estimates of net primary production and net ecosystem CO2 exchange, and for applicable variables, methods of estimation, for a mixed-grassland (campo sujo) located in the southern Amazon Basin and a riparian forest (Mata de galeria) located in the northern Pantanal derived from inventory and eddy covariance methods.  

See metadata file for a detailed description of the dataset.
DOI: 10.6084/m9.figshare.28823651.v1
title: Genome coverage track for SRR3414629 RNA-seq sample in bigWig format

description: This dataset represents the genome coverage track for RNA-seq sample SRR3414629 aligned to the mouse genome (mm10) using HISAT2. The coverage was computed using bedtools genomecov, sorted and converted to the bigWig format via bedGraphToBigWig for visualization in genome browsers such as UCSC.
DOI: 10.17632/pt5scmp33z
title: Data and code for "Pulmonary function, body posture and balance in young adults with asthma: A cross-sectional study"

description: Dataset and R code to reproduce the statistical analysis.
DOI: 10.17632/xbyd8tj9yn
title: Instances - IPMTC

description: Set of 2880 instances named IPMTC-I and IPMTC-II, and used in the paper "Scheduling identical parallel machines with tooling constraints", by Beezão, Cordeau, Laporte and Yanasse, published at EJOR, 2017 (https://www.sciencedirect.com/science/article/abs/pii/S0377221716306233) For further questions, please contact me at: andreza.beezao@gmail or andreza.moreira@ufla.br.
DOI: 10.6084/m9.figshare.19499450.v1
title: patches and local annotations, slide 156, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.28405250.v1
title: Rivers

description: Just for testing
DOI: 10.6084/m9.figshare.28822529.v1
title: <b>Variation in salivary pH after the intake of two infusions in children</b>

description: <b>Variation in salivary pH after the intake of two infusions in children</b>
DOI: 10.17632/sgnnh6xssx
title: Data for: Experimental and Numerical Comparison of an Energy and a Heat Exchanger

description: The data represents the measurement results of an air-to-air enthalpy exchanger and a heat exchanger. Such exchangers are used in ventilation devices. The data include 101 measurement points with different boundary conditions (winter and summer condition). The temperature, the humidity, the volume flow and all relevant pressures and pressure differences are provided. The data are mean values of a steady-state measurement.