cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.esxbhh
title: Occurrence Download

description: A dataset containing 20102 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (×Dactylodenia wintonii (Druce) Peitz, ×Elytrordeum rouxii (Gren. & Duval-Jouve) Kerguélen, 1994, ×Orchidactyla kromayeri (M.Schulze) Borsos & Soó, ×Polygonorumex guinetii J.Weill, ×Schedolium loliaceum (Huds.) Holub, ×Triticosecale rimpaui (M.Graebn.) Wittm. ex A.W.Hill, Abies alba Mill., Abies balsamea (L.) Mill., Abies borisii-regis Mattf., Abies cephalonica Loudon)",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2013"
 ]
}

 The dataset includes 20102 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047079-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92xdyz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Neillia uekii Nakai",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201699-220831081235567/datasets/export for details.
DOI: 10.15468/dl.zmm4n6
title: Occurrence Download

description: A dataset containing 198440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Hyacinthoides hispanica (Mill.) Rothm., Hyacinthoides non-scripta (L.) Chouard ex Rothm.)"
 ]
}

 The dataset includes 198440 records from 900 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004807-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pvwv46
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nepeta trichocalyx Greuter & Burdet"
 ]
}

 The dataset includes 24 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047084-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g85nrz
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Garuga pinnata Roxb.",
 "Year 1842-2020"
 ]
}

 The dataset includes 42 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183338-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n656sx
title: Occurrence Download

description: A dataset containing 17164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brotula barbata (Bloch & Schneider, 1801)"
 ]
}

 The dataset includes 17164 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121918-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axxnpd
title: Occurrence Download

description: A dataset containing 10159 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Grey seals ARGOS telemetry in Molene Archipelago"
 ]
}

 The dataset includes 10159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0183341-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hr2qe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geum coccineum Sibth. & Sm.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201698-220831081235567/datasets/export for details.
DOI: 10.15468/dl.swrjhu
title: Occurrence Download

description: A dataset containing 5916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Sri Lanka",
 "TaxonKey is Aerodramus unicolor (Jerdon, 1840)"
 ]
}

 The dataset includes 5916 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279247-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vpzmf
title: Occurrence Download

description: A dataset containing 3117959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polypodiopsida",
 "Year 1900-1990"
 ]
}

 The dataset includes 3117959 records from 981 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230927-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x96kkq
title: Occurrence Download

description: A dataset containing 4883 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((97.5 22.5,105 22.5,105 30,97.5 30,97.5 22.5))"
 ]
}

 The dataset includes 4883 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040901-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpfdxa
title: Occurrence Download

description: A dataset containing 38494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Insecta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((15 -30,22.5 -30,22.5 -22.5,15 -22.5,15 -30))"
 ]
}

 The dataset includes 38494 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040903-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3sqkvy
title: Occurrence Download

description: A dataset containing 2279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((105 22.5,112.5 22.5,112.5 30,105 30,105 22.5))"
 ]
}

 The dataset includes 2279 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040905-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/csc2.obs.17641
title: Chandra X-ray Observatory ObsId 17641

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.15468/dl.jixqo5
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Dentex angolensis Poll & Maul, 1953",
 "TaxonKey is Miracorvina angolensis (Norman, 1935)"
 ]
}

 The dataset includes 1472 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005936-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/csc2.obs.17660
title: Chandra X-ray Observatory ObsId 17660

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.15468/dl.je83gc
title: Occurrence Download

description: A dataset containing 9200392 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 },
 {
 "or" : [
 "Country is Serbia",
 "Country is Hungary",
 "Country is Slovakia",
 "Country is Czechia",
 "Country is Poland",
 "Country is Ireland",
 "Country is Denmark",
 "Country is Montenegro",
 "Country is Albania",
 "Country is Kosovo",
 "Country is North Macedonia",
 "Country is Greece",
 "Country is Bulgaria",
 "Country is Åland Islands",
 "Country is Isle of Man",
 "Country is Gibraltar",
 "Country is Svalbard and Jan Mayen",
 "Country is Faroe Islands",
 "Country is San Marino",
 "Country is Romania",
 "Country is Moldova, Republic of",
 "Country is Ukraine",
 "Country is Türkiye",
 "Country is Belarus",
 "Country is Lithuania",
 "Country is Latvia",
 "Country is Estonia",
 "Country is Russian Federation",
 "Country is Finland"
 ]
 },
 {
 "or" : [
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded",
 "Issue is Country derived from coordinates",
 "Issue is Recorded date invalid"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Animalia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9200392 records from 1369 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014220-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7uz0k
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteromys teleus Anderson & Jarrín-V., 2002"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014735-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lxmosr
title: Occurrence Download

description: A dataset containing 340 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((108.19336 23.81048,160.10925 23.81048,160.10925 56.60789,108.19336 56.60789,108.19336 23.81048))",
 "HasCoordinate is true",
 "TaxonKey is Schizophragma hydrangeoides Siebold & Zucc.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 340 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005936-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/csc2.obs.18670
title: Chandra X-ray Observatory ObsId 18670

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.15468/dl.qehfgy
title: Occurrence Download

description: A dataset containing 801713 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "OccurrenceStatus is Present",
 "TaxonKey is Setophaga coronata (Linnaeus, 1766)",
 "Year 1960-2021"
 ]
}

 The dataset includes 801713 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080895-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/csc2.obs.18721
title: Chandra X-ray Observatory ObsId 18721

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.25574/csc2.obs.16443
title: Chandra X-ray Observatory ObsId 16443

description: CSC uses combined (i.e. overlapping) Chandra observations for detecting X-ray sources. This allows the catalog to include significantly fainter sources than CSC 1.1. The set of overlapping observations that have been combined in this way is known as a "stack".
DOI: 10.15468/dl.czbruj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium pannonicum",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011716-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5xwgr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium pannonicum",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011717-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/impnhm
title: Xylophaga in situ Eclusion Experiment

description: We tested the effect of the presence of Xylophaga sp. on the microbial community and on the hydrogen sulfide concentration during a 85 days experiment at 500m deep. We validate the ability of wood falls microbial community to produce a significant amount of hydrogen sulfide in the absence of Xylophaga sp. during the first months of wood falls colonization
DOI: 10.15468/wv6xcg
title: Bacteria and Archaea biodiversity in terrestrial ecosystems of Chilean Patagonia

description: Methane emissions from aquatic and terrestrial ecosystems play a crucial role in global warming, which is particularly affecting high-latitude ecosystems. As major contributors to methane emissions in natural environments, the microbial communities involved in methane production and oxidation deserve a special attention. Microbial diversity and activity are expected to be strongly affected by the already observed (and further predicted) temperature increase in high-latitude ecosystems, eventually resulting in disrupted feedback methane emissions. The METHANOBASE project has been designed to investigate the intricate relations between microbial diversity and methane emissions in Arctic, Subarctic and Subantarctic ecosystems, under natural (baseline) conditions and in response to simulated temperature increments. We report here a small subunit ribosomal RNA (16S rRNA) analysis of lake, peatland and mineral soil ecosystems.
DOI: 10.15468/bolnbw
title: uncultured bacterium Targeted Locus (Loci)

description: The bacterial community at 2,000-m depth was studied over one-year survey in 2011 at the ANTARES site (Northwestern Mediterranean Sea). The most active member were analysed in October and May through ribosomal diversity.
DOI: 10.15468/dl.myfnak
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium pannonicum",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011718-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/7bj8ga
title: 1)sediments; 2) coral floc Metagenome

description: Deep-sea sediments and coral flocculant material (floc) collected from a coral community impacted by the Deepwater Horizon (DWH) oil spill were examined to determine the diversity of microbes and the presence of oil-degrading genes
DOI: 10.6084/m9.figshare.30197075
title: Epigenetic insights into mastitis in Mediterranean Italian River buffalo using nanopore sequencing

description: Mastitis represents one of the main challenges in dairy buffalo farming, with significant implications for animal health, milk quality, and farm profitability. Among its different forms, subclinical mastitis is difficult to detect due to the absence of standardised diagnostic tools. Epigenetic mechanisms, such as DNA methylation, have been associated with immune response and disease susceptibility in cattle, but remain unexplored in buffaloes. This study explores genome-wide DNA methylation profiles in Mediterranean Italian River Buffaloes, using nanopore sequencing technology, to identify potential epigenetic signatures associated with mastitis resistance. CpG sites showed a unimodal distribution, with most sites exhibiting high methylation levels. A total of 22 differentially methylated cytosines (DMCs) were identified, with 68% showing hypomethylation in the control group and 32% showing hypermethylation. Genomic annotation revealed that hypermethylated DMCs were predominantly located in intronic regions, while hypomethylated DMCs were largely enriched in distal intergenic regions. This study is the first to investigate DNA methylation changes associated with mastitis in Mediterranean Italian River Buffalo using nanopore sequencing. Distinct epigenetic patterns were identified between healthy and mastitic animals. This study provides a first epigenetic overview of mastitis in buffaloes and lays the groundwork for future investigations with larger cohorts to validate and extend these observations. Given the small sample size, these findings should be considered exploratory, but offer insights into the molecular basis of mastitis and may support the development of new diagnostic tools based on validated epigenetic signatures. Genome-wide DNA methylation profiling in buffalo using nanopore sequencing Identification of 22 DMCs associated with mastitis in buffalo Detection of different epigenetic patterns between groups
DOI: 10.6084/m9.figshare.30197075.v1
title: Epigenetic insights into mastitis in Mediterranean Italian River buffalo using nanopore sequencing

description: Mastitis represents one of the main challenges in dairy buffalo farming, with significant implications for animal health, milk quality, and farm profitability. Among its different forms, subclinical mastitis is difficult to detect due to the absence of standardised diagnostic tools. Epigenetic mechanisms, such as DNA methylation, have been associated with immune response and disease susceptibility in cattle, but remain unexplored in buffaloes. This study explores genome-wide DNA methylation profiles in Mediterranean Italian River Buffaloes, using nanopore sequencing technology, to identify potential epigenetic signatures associated with mastitis resistance. CpG sites showed a unimodal distribution, with most sites exhibiting high methylation levels. A total of 22 differentially methylated cytosines (DMCs) were identified, with 68% showing hypomethylation in the control group and 32% showing hypermethylation. Genomic annotation revealed that hypermethylated DMCs were predominantly located in intronic regions, while hypomethylated DMCs were largely enriched in distal intergenic regions. This study is the first to investigate DNA methylation changes associated with mastitis in Mediterranean Italian River Buffalo using nanopore sequencing. Distinct epigenetic patterns were identified between healthy and mastitic animals. This study provides a first epigenetic overview of mastitis in buffaloes and lays the groundwork for future investigations with larger cohorts to validate and extend these observations. Given the small sample size, these findings should be considered exploratory, but offer insights into the molecular basis of mastitis and may support the development of new diagnostic tools based on validated epigenetic signatures. Genome-wide DNA methylation profiling in buffalo using nanopore sequencing Identification of 22 DMCs associated with mastitis in buffalo Detection of different epigenetic patterns between groups
DOI: 10.15468/p6o3m6
title: Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan)

description: We determined the composition of water and sediment bacterial assemblages from the East Sea using 16S rRNA gene sequencing. Total bacterial reads were greater in surface waters (&lt;100 m) than in deep seawaters (&gt;500 m) and sediments. However, total OTUs, bacterial diversity, and evenness were greater in deep seawaters than in surface waters with those in the sediment comparable to the deep sea waters. Proteobacteria was the most dominant bacterial phylum comprising 67.3% of the total sequence reads followed by Bacteriodetes (15.8%). Planctomycetes, Verrucomicrobia, and Actinobacteria followed all together consisting of only 8.1% of the total sequence. Candidatus Pelagibacter ubique considered oligotrophic bacteria, and Planctomycetes copiotrophic bacteria showed an opposite distribution in the surface waters, suggesting a potentially direct competition for available resources by these bacteria with different traits. The bacterial community in the warm surface waters were well separated from the other deep cold seawater and sediment samples. The bacteria exclusively associated with deep sea waters was Actinobacteriacea, known to be prevalent in the deep photic zone. The bacterial group Chromatiales and Lutibacter were those exclusively associated with the sediment samples. The overall bacterial community showed similarities in the horizontal rather than vertical direction in the East Sea.
DOI: 10.15468/hrtf4u
title: 18S rRNA amplicon sequencing from the Ocean Sampling Day (OSD) campaign June 2018

description: Ocean Sampling Day was initiated by the EU-funded Micro B3 (Marine Microbial Biodiversity, Bioinformatics, Biotechnology) project to obtain a snapshot of the marine microbial biodiversity and function of the world’s oceans. It is a simultaneous global mega-sequencing campaign aiming to generate the largest standardized microbial data set in a single day. This will be achievable only through the coordinated efforts of an Ocean Sampling Day Consortium, supportive partnerships and networks between sites. The OSD2018 event is a continuation of the successful OSD events of Micro B3 project (https://www.microb3.eu/osd.html).
DOI: 10.15468/xaaykj
title: aquatic bacterial metagenome Raw sequence reads

description: Bacterioplankton metacommunity structure across thermal effluent gradients