cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14188022
title: Datasets for Electrical Resistivity Tomography HotBENT-Lab experiment

description: The dataset comprises Electrical Resistivity Tomography (ERT) data from the HotBENT-Lab experiments, which are aimed at understanding moisture dynamics and related swelling effects in bentonite under thermal-hydrological-mechanical-chemical (THMC) conditions. These experiments simulate environmental conditions similar to those in geological repositories for high-level radioactive waste.





calibration.csv: This file contains ERT data collected from HotBENT-Lab 2, which was designed to closely mimic field conditions by using a higher dry density (1.45 g/cm³) and reduced initial water content (5.3%). The dataset includes detailed electrical conductivity measurements over time and across the experimental columns, which were used to estimate water content and track changes due to swelling effects.




c1c2_midtc_data.csv: This file contains ERT data from HotBENT-Lab 1, which serves as a foundational experiment with a lower dry density (1.2 g/cm³) and higher initial water content (18%). This dataset captures early-stage moisture distribution and temperature effects, allowing for comparative analysis of swelling and conductivity changes.



Both datasets are integral for validating the multi-scale ERT-based framework used to estimate moisture dynamics and assess the scalability of petrophysical models in controlled laboratory conditions.
DOI: 10.5281/zenodo.14188023
title: Datasets for Electrical Resistivity Tomography HotBENT-Lab experiment

description: The dataset comprises Electrical Resistivity Tomography (ERT) data from the HotBENT-Lab experiments, which are aimed at understanding moisture dynamics and related swelling effects in bentonite under thermal-hydrological-mechanical-chemical (THMC) conditions. These experiments simulate environmental conditions similar to those in geological repositories for high-level radioactive waste.





calibration.csv: This file contains ERT data collected from HotBENT-Lab 2, which was designed to closely mimic field conditions by using a higher dry density (1.45 g/cm³) and reduced initial water content (5.3%). The dataset includes detailed electrical conductivity measurements over time and across the experimental columns, which were used to estimate water content and track changes due to swelling effects.




c1c2_midtc_data.csv: This file contains ERT data from HotBENT-Lab 1, which serves as a foundational experiment with a lower dry density (1.2 g/cm³) and higher initial water content (18%). This dataset captures early-stage moisture distribution and temperature effects, allowing for comparative analysis of swelling and conductivity changes.



Both datasets are integral for validating the multi-scale ERT-based framework used to estimate moisture dynamics and assess the scalability of petrophysical models in controlled laboratory conditions.
DOI: 10.15468/dl.dnpa2b
title: Occurrence Download

description: A dataset containing 2939 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Virola surinamensis (Rol. ex Rottb.) Warb., Myristica gracilis A.DC., Myristica surinamensis Rol. ex Rottb.)"
 ]
}

 The dataset includes 2939 records from 183 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022442-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybwkd7
title: Occurrence Download

description: A dataset containing 1544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)",
 "Country is Japan",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1544 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022443-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gssrnn
title: Occurrence Download

description: A dataset containing 2143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "TaxonKey is Anolis chlorocyanus Duméril & Bibron, 1837"
 ]
}

 The dataset includes 2143 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022444-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25f43v
title: Occurrence Download

description: A dataset containing 11539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is López-Uribe Lab Collection",
 {
 "or" : [
 "Geometry POLYGON((-90 34,-39 34,-39 43,-90 43,-90 34))",
 "Geometry POLYGON((-105 34,-39 34,-39 43,-105 43,-105 34))",
 "Geometry POLYGON((-105 31,-39 31,-39 43,-105 43,-105 31))",
 "Geometry POLYGON((-105 31,25 31,25 43,-105 43,-105 31))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 11539 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022446-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ep4zpx
title: Occurrence Download

description: A dataset containing 826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Elevation 2934.0-5085.0m",
 "Geometry POLYGON((-76.93598 1.59433,-76.94808 1.43101,-76.73631 1.43101,-76.73328 1.59735,-76.93598 1.59433))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 826 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022447-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xs2qm
title: Occurrence Download

description: A dataset containing 191620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bistorta bistortoides (Pursh) Small, Polygonum bistortoides Pursh, Bistorta vivipara (L.) Gray, Bistorta vivipara (L.) Delarbre, Polygonum viviparum L.)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 191620 records from 570 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022413-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15482/usda.adc/1503805
title: Agrilus planipennis genome annotations v0.5.3
DOI: 10.15482/usda.adc/25076114
title: Agrilus planipennis community manual annotations

description: Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction. Community curators compare an existing gene model to evidence such as RNA-Seq or protein alignments from the same or closely related species and modify the structure or function of the gene accordingly, typically following the i5k Workspace@NAL manual annotation guidelines (https://i5k.nal.usda.gov/content/rules-web-apollo-annotation-i5k-pilot-project). If a gene model is missing, the annotator can also use this evidence to create a new gene model. Because manual annotation, by definition, improves or creates gene models where computational methods have failed, it can be a powerful tool to improve computational gene sets, which often serve as foundational datasets to facilitate research on a species.Here, community curators used manual annotation at the i5k Workspace@NAL to improve computational gene predictions from the dataset <i>Agrilus planipennis</i> genome annotations v0.5.3. The i5k Workspace@NAL set up the Apollo v1 manual annotation software and multiple evidence tracks to facilitate manual annotation. From 2014-10-20 to 2018-07-12, five community curators updated 263 genes, including developmental genes; cytochrome P450s; cathepsin peptidases; cuticle proteins; glycoside hydrolases; and polysaccharide lyases. For this dataset, we used the program LiftOff v1.6.3 to map the manual annotations to the genome assembly GCF_000699045.2. We computed overlaps with annotations from the RefSeq database using gff3_merge from the GFF3toolkit software v2.1.0. FASTA sequences were generated using gff3_to_fasta from the same toolkit. These improvements should facilitate continued research on <i>Agrilus planipennis</i>, or emerald ash borer (EAB), which is an invasive insect pest.While these manual annotations will not be integrated with other computational gene sets, they are available to view at the i5k Workspace@NAL (https://i5k.nal.usda.gov) to enhance future research on <i>Agrilus planipennis.</i>
DOI: 10.15482/usda.adc/25076114.v1
title: Agrilus planipennis community manual annotations

description: Manual annotation at the i5k Workspace@NAL (https://i5k.nal.usda.gov) is the review and improvement of gene models derived from computational gene prediction. Community curators compare an existing gene model to evidence such as RNA-Seq or protein alignments from the same or closely related species and modify the structure or function of the gene accordingly, typically following the i5k Workspace@NAL manual annotation guidelines (https://i5k.nal.usda.gov/content/rules-web-apollo-annotation-i5k-pilot-project). If a gene model is missing, the annotator can also use this evidence to create a new gene model. Because manual annotation, by definition, improves or creates gene models where computational methods have failed, it can be a powerful tool to improve computational gene sets, which often serve as foundational datasets to facilitate research on a species.Here, community curators used manual annotation at the i5k Workspace@NAL to improve computational gene predictions from the dataset <i>Agrilus planipennis</i> genome annotations v0.5.3. The i5k Workspace@NAL set up the Apollo v1 manual annotation software and multiple evidence tracks to facilitate manual annotation. From 2014-10-20 to 2018-07-12, five community curators updated 263 genes, including developmental genes; cytochrome P450s; cathepsin peptidases; cuticle proteins; glycoside hydrolases; and polysaccharide lyases. For this dataset, we used the program LiftOff v1.6.3 to map the manual annotations to the genome assembly GCF_000699045.2. We computed overlaps with annotations from the RefSeq database using gff3_merge from the GFF3toolkit software v2.1.0. FASTA sequences were generated using gff3_to_fasta from the same toolkit. These improvements should facilitate continued research on <i>Agrilus planipennis</i>, or emerald ash borer (EAB), which is an invasive insect pest.While these manual annotations will not be integrated with other computational gene sets, they are available to view at the i5k Workspace@NAL (https://i5k.nal.usda.gov) to enhance future research on <i>Agrilus planipennis.</i>
DOI: 10.15468/dl.shqauh
title: Occurrence Download

description: A dataset containing 1544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)",
 "Country is Japan",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1544 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022451-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjq4s8
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "TaxonKey is Osteopilus vastus (Cope, 1871)"
 ]
}

 The dataset includes 301 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022453-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sb7eeh
title: Occurrence Download

description: A dataset containing 6657 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maccullochella peelii (Mitchell, 1838)"
 ]
}

 The dataset includes 6657 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022452-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14188111
title: finnpiatscheck/Environmental-Effects-on-a-Fig-Wasp-Community: Data sets and R scripts

description: These are the data and R scripts used in the paper "Landscape-Level Analysis of a Fig-Pollinator-Antagonist Community: Spatial and Temporal Variation in a Fig Wasp Community and its Response to Biotic and Abiotic Factors".
DOI: 10.5281/zenodo.14187957
title: Biogeochemical evidence raises questions on the longevity of warming-induced growth enhancements in wet boreal forests

description: Dataset comprised of nutrient content, fluxes, and stocks (C, N, and P) from soil and litterfall samples collected from terrestrial sites across the Newfoundland and Labrador  Boreal Ecosystem Latidudinal Transect (NL-BELT).
DOI: 10.5281/zenodo.14188020
title: Dataset for "Decreased northern hemisphere precipitation from consecutive CO2 doublings is associated with significant AMOC weakening"

description: Zhang, X., Waugh, D. W., Mitevski, I., Orbe, C., & Polvani, L. M. (2024). Decreased northern hemisphere precipitation from consecutive CO2 doublings is associated with significant AMOC weakening. Environmental Research: Climate. https://doi.org/10.1088/2752-5295/ad929c


We analyzed surface temperature (TS), precipitation (PR), and the Atlantic meridional overturning circulation (AMOC) streamfunction from multiple coupled climate models simulations across different abrupt CO2 forcing experiments. The original data are downloaded from the CMIP6 archive, the LongrunMIP archive (https://www.longrunmip.org/), and from a previous study by Mitevski et al. (2021, doi: 10.1029/2020GL090861). Data are post processed using Python code and are saved in NetCDF format.

Files and variables:

File: AMOC.zip

Description: This folder includes NetCDF files of the Atlantic meridional overturning circulation (AMOC) streamfunction (in Sv) time series from all models. File names indicate model names.

File: TS_PR.zip

Description: This folder includes NetCDF files of spatially varying (in latitude and longitude) surface temperature (TS, in K) and precipitation (PR, in kg s-1 m-2) time series from all models. File names indicate model names.

The data can be viewed using Python packages Xarray, Matplotlib, and Cartopy, as well as NCO.

Other publicly accessible locations of the data:

https://aims2.llnl.gov/search/cmip6/
DOI: 10.5281/zenodo.14188021
title: Dataset for "Decreased northern hemisphere precipitation from consecutive CO2 doublings is associated with significant AMOC weakening"

description: Zhang, X., Waugh, D. W., Mitevski, I., Orbe, C., & Polvani, L. M. (2024). Decreased northern hemisphere precipitation from consecutive CO2 doublings is associated with significant AMOC weakening. Environmental Research: Climate. https://doi.org/10.1088/2752-5295/ad929c


We analyzed surface temperature (TS), precipitation (PR), and the Atlantic meridional overturning circulation (AMOC) streamfunction from multiple coupled climate models simulations across different abrupt CO2 forcing experiments. The original data are downloaded from the CMIP6 archive, the LongrunMIP archive (https://www.longrunmip.org/), and from a previous study by Mitevski et al. (2021, doi: 10.1029/2020GL090861). Data are post processed using Python code and are saved in NetCDF format.

Files and variables:

File: AMOC.zip

Description: This folder includes NetCDF files of the Atlantic meridional overturning circulation (AMOC) streamfunction (in Sv) time series from all models. File names indicate model names.

File: TS_PR.zip

Description: This folder includes NetCDF files of spatially varying (in latitude and longitude) surface temperature (TS, in K) and precipitation (PR, in kg s-1 m-2) time series from all models. File names indicate model names.

The data can be viewed using Python packages Xarray, Matplotlib, and Cartopy, as well as NCO.

Other publicly accessible locations of the data:

https://aims2.llnl.gov/search/cmip6/
DOI: 10.5281/zenodo.14187981
title: 19129_2020_09_06_DownUpshift_2_0_2_glu_ura_mig1msn2_phluorin_00 (part 1)

description: High throughput time lapse experiment. Details can be found on the 'txt' files inside.
DOI: 10.5281/zenodo.14187982
title: 19129_2020_09_06_DownUpshift_2_0_2_glu_ura_mig1msn2_phluorin_00 (part 1)

description: High throughput time lapse experiment. Details can be found on the 'txt' files inside.
DOI: 10.15468/dl.49rxfb
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sundatyphlops polygrammicus (Schlegel, 1839)"
 ]
}

 The dataset includes 70 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022454-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qnjbs5
title: Occurrence Download

description: A dataset containing 1544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)",
 "Country is Japan",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 1544 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022455-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.d9tmzff5
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (67771 records)
DOI: 10.15468/dl.a3b3c4
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trachemys scripta (Thunberg In Schoepff, 1792)",
 "Country is Martinique",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 58 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022457-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.haufx4
title: Occurrence Download

description: A dataset containing 232171 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus impatiens Cresson, 1863"
 ]
}

 The dataset includes 232171 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022425-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t546u2
title: Occurrence Download

description: A dataset containing 6657 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maccullochella peelii (Mitchell, 1838)"
 ]
}

 The dataset includes 6657 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022458-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3v6p4
title: Occurrence Download

description: A dataset containing 803705 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP.5.5_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 803705 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022418-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-224877
title: The Word of Truth, 1991, vol. 2, no. 1 = Cuvantul Adevarului, 1991, anul II, nr 1

description: [description english/roman)] The Word of Truth is the periodical, official publication of the Romanian Pentecostal Church beginning from 1990 to present.
DOI: 10.15468/dl.gcu4pp
title: Occurrence Download

description: A dataset containing 4672 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Cladonia P.Browne, 1756)"
 ]
}

 The dataset includes 4672 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009766-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy839p
title: Occurrence Download

description: A dataset containing 11304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bahamas",
 "Geometry POLYGON((-76.15293 24.61986,-75.30168 23.67708,-74.45213 24.17117,-74.94306 25.15598,-76.15293 24.61986))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11304 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032260-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpzyg7
title: Occurrence Download

description: A dataset containing 3027 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Peru, Ecuador)",
 "OccurrenceStatus is Present",
 "TaxonKey is Chloroceryle amazona (Latham, 1790)",
 "Year 2020-2022"
 ]
}

 The dataset includes 3027 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009768-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-224282
title: The Word of Truth, 1937, vol. 9, no. 1 = Cuvantul Adevarului, 1937, anul IX, nr 1

description: [description english/roman)] The Word of Truth is the periodical bulletin of the major Pentecostal group from Romania between 1929-1937.
DOI: 10.15468/dl.bycen5
title: Occurrence Download

description: A dataset containing 1723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Hamelia rovirosae Wernham, Galium pilosum Aiton)"
 ]
}

 The dataset includes 1723 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032258-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-224187
title: The Word of Truth, 1936, vol. 8, no. 6 = Cuvantul Adevarului, 1936, anul VIII, nr 6

description: [description english/roman)] The Word of Truth is the periodical bulletin of the major Pentecostal group from Romania between 1929-1937.
DOI: 10.15468/dl.cjbgj2
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alkanna sartoriana Boiss. & Heldr."
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009773-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.