cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/102257
title: Supporting data for "Clonality, inbreeding, and hybridization in two extremotolerant black yeasts"

description: The great diversity of lifestyles and survival strategies observed in fungi is reflected in the many ways in which they reproduce and recombine. Although truly asexual fungi are rare, population genomic data support the clonality of two extremotolerant black yeasts from Dothideomycetes: <i>Hortaea werneckii</i> and <i>Aureobasidium melanogenum</i>. Thus, the discovery of a number of diploid strains of these species could not be explained as the product of conventional sexual reproduction. <br>Genome sequencing revealed that the ratio of diploid to haploid strains in both <i>H. werneckii</i> and <i>A. melanogenum</i> is approximately 2:1. Linkage disequilibrium between pairs of polymorphic loci and a high degree of concordance between the phylogenies of different genomic regions confirmed that both species are clonal. Heterozygosity of diploid strains is high, with several hybridizing genome pairs reaching the intergenomic distances typically seen between different fungal species. The origin of diploid strains collected worldwide can be traced to a handful of hybridization events that produced diploids, which were stable over long periods of time and distributed over large geographic areas. <br>Our results, based on the genomes of over 100 strains of two black yeasts, show that although they are asexual, they occasionally form stable and highly heterozygous diploid hybrids. The mechanism of these apparently rare hybridization events, which are not followed by meiosis or haploidisation, remains unknown. Both extremotolerant yeasts, <i>H. werneckii</i> and even more so <i>A. melanogenum</i>, a close relative of the intensely recombining and biotechnologically relevant <i>Aureobasidium pullulans</i>, provide an attractive model for studying the role of clonality and ploidy in extremotolerant fungi.
DOI: 10.5524/102258
title: Supporting data for "Sex-based <i>de novo</i> transcriptome assemblies of the parasitoid wasp <i>Encarsia suzannae</i>, a host of the manipulative heritable symbiont <i>Cardinium hertigii</i>"

description: Minute parasitoid wasps in the genus <i>Encarsia</i> are commonly used as biological pest control agents of whiteflies and armored scale insects in greenhouses or in the field. They are also a key host of the bacterial endosymbiont <i>Cardinium hertigii</i> which can cause a suite of reproductive manipulation phenotypes, including parthenogenesis, feminization, and cytoplasmic incompatibility; the last being most thoroughly studied in <i>Encarsia suzannae</i>. Despite their biological and economic importance, there are currently no published <i>Encarsia</i> genomes and only one public transcriptome. In this study, we applied a mapping-and-removal approach to eliminate known contaminants from previously-obtained Illumina sequencing data. We generated <i>de novo</i> transcriptome assemblies for both female and male <i>E. suzannae</i> which contain 45,986 and 54,762 final coding sequences, respectively. Benchmarking Single-Copy Orthologs (BUSCO) results indicate both assemblies are highly complete. Preliminary analyses revealed the presence of homologs of sex-determination genes characterized in other insects and putative venom proteins. These transcriptomes will be valuable tools to better understand the biology of <i>Encarsia</i> wasps and their evolutionary relatives. Furthermore, the separate male and female assemblies will be particularly useful references for studies involving insects of only one sex.
DOI: 10.15468/dl.w9eq79
title: Occurrence Download

description: A dataset containing 136547 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Heteromorpha arborescens, Pluchea ovalis, Tephroseris palustris, Colchicum walteri, Xiphotheca elliptica, Syncarpha flava, Colchicum hantamense, Biarum kotschyi, Dichelostemma multiflorum, Nicotiana rosulata, Syncarpha dykei, Nicotiana suaveolens, Cleretum hestermalense, Linanthus bellus, Orchis galilaea, Kedrostis gijef, Cistanthe crassifolia, Calicorema capitata, Prunus hippophaeoides, Seddera capensis, Microloma armatum, Diplacus rutilus, Aconitum castellanum, Pauridia glabella, Pentapeltis peltigera, Armeria merinoi, Anisodontea anomala, Senegalia fleckii, Orchis orphanidesii, Hereroa carinans, Seddera arabica, Cistanthe coquimbensis, Ledebouria inquinata, Blotiella natalensis, Launaea procumbens, Amyema thalassia, Oxalis orthopoda, Vigna luteola, Selaginella lepidophylla, Bunium nudum, Tecticornia pterygosperma, Planea schlechteri, Commicarpus scandens, Selaginella imbricata, Coopernookia strophiolata, Rubus incanescens, Phylica harveyi, Dianthus hispidus, Tecticornia triandra, Coursetia glabella, Zantedeschia aethiopica, Berkheya discolor, Gastrocotyle macedonica, Rubus rotundifoliatus, Goodenia verreauxii, Sedum candolleanum, Mandevilla subsagittata, Tecticornia indica, Rubus angustisetus, Anemonoides pittonii, Colubrina viridis, Echinocereus maritimus, Pogonarthria squarrosa, Ammocharis coranica, Karpatiosorbus hybrida, Trinia frigida, Anthemis microcephala, Gilliesia atropurpurea, Zyrphelis outeniquae, Calochlaena dubia, Leucospermum parile, Craterocapsa montana, Bellevalia dubia, Bellevalia olivieri, Dicrastylis corymbosa, Tromotriche revoluta, Deschampsia patula, Tragia laciniata, Sparaxis metelerkampiae, Ranunculus kuepferi, Festuca polita, Teucrium disjunctum, Alchemilla florulenta, Baccharis pycnocephala, Schizachyrium condensatum, Heliosperma alpestre, Antimima lokenbergensis, Antimima distans, Apatesia helianthoides, Schoenia cassiniana, Knautia calycina, Thinopyrum elongatum, Pentas lanceolata, Antimima evoluta, Lithops euniceae, Drymocallis pseudorupestris, Marcus-Kochia ramosissima, Alchemilla mollis, Antimima stokoei)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 136547 records from 1118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017667-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/b1ff9bf4-8b1f-4211-b407-17779dccc5f9
title: The effects of charge doping and dimensionality on the electronic structure of van der Waals magnet CrGeTe3 (Thesis Data)

description: The dataset contains the data used to produce the figures and analysis for my thesis. The data was sorted by chapter and then by figure number so as to be easily accessible. Photoemission data (collection process outlined in great detail in my thesis) is found in txt, nxs and xy format, these files can be easily loaded using bespoke Python scripts and plotted using Python visualisation packages (for example matplotlib). Density functional theory data (specifics of production are outlined in my thesis) is found in with form of txt and data files which are easily loaded using Python scripts and plotted using Python visualisation packages (for example matplotlib). 3D charge density is stored in the CHGCAR file and can be visualized using VESTA. X-ray absorption and X-ray circular dichroism data (collection process outlined in great detail in my thesis) is stored as nxs files and can be easily loaded using bespoke Python scripts and plotted using Python visualisation packages (for example matplotlib).
DOI: 10.15468/dl.q8tbvj
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erica cinerea, Pectenia atlantica, Asplenium marinum, Pleurozia purpurea, Breutelia chrysocoma, Asplenium adiantum-nigrum, Carex binervis, Scapania ornithopodioides, Hypericum pulchrum, Conopodium majus, Galium saxatile, Luzula sylvatica, Digitalis purpurea, Sphagnum strictum, Erica tetralix, Narthecium ossifragum, Sphagnum quinquefarium, Struthiopteris spicant, Racomitrium lanuginosum, Oreopteris limbosperma, Aconitum septentrionale, Flavocetraria nivalis, Cladonia stellaris, Carex chordorrhiza, Angelica archangelica, Phyllodoce caerulea, Calamagrostis arundinacea, Veronica verna, Carex globularis, Carex laxa, Calamagrostis lapponica, Diplazium sibiricum, Elymus fibrosus, Gymnocarpium continentale, Moehringia lateriflora)",
 "Country is Norway",
 "HasCoordinate is true",
 "Geometry POLYGON((8.80 59.90, 9.20 59.90, 9.20 60.10, 8.80 60.10, 8.80 59.90))",
 "CoordinateUncertaintyInMeters is 0,100",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 158 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017702-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhj3zh
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dalbulus maidis"
 ]
}

 The dataset includes 45 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017708-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mg6bt
title: Occurrence Download

description: A dataset containing 3580 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sargassum vulgare"
 ]
}

 The dataset includes 3580 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017705-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r8hzeg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euborlasia variegata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017706-251025141854904/datasets/export for details.
DOI: 10.15468/dl.bvfx8s
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Procyon pygmaeus",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2002",
 "Year is less than or equal to 2012"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017703-251025141854904/datasets/export for details.
DOI: 10.15468/dl.tybb88
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Italy",
 "DatasetKey is Observation.org, Nature data from around the World",
 "IucnRedListCategory is CR",
 "License is CC-BY-NC 4.0",
 "PublishingOrg is c8d737e0-2ff8-42e8-b8fc-6b805d26fc5f"
 ]
}

 The dataset includes 155 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017709-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm4zgb
title: Occurrence Download

description: A dataset containing 6267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((9.25322 45.41739,9.26722 45.43164,9.27552 45.44882,9.27485 45.46745,9.27125 45.48673,9.2611 45.51286,9.24307 45.51067,9.21022 45.50876,9.18226 45.49224,9.1691 45.46676,9.17609 45.44218,9.18224 45.42078,9.22652 45.41569,9.25322 45.41739))"
 ]
}

 The dataset includes 6267 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017710-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17532455
title: weecology/portal-forecasts: 2025-11-05

description: Weekly forecasts for the Portal Project rodent population data. This dataset contains automated forecasts generated using multiple ecological forecasting models for the Portal Project's long-term rodent population study site in Arizona, USA.
description: This release contains the latest automated forecasts from the Portal Project forecasting pipeline. The forecasts are generated weekly and include predictions for multiple rodent species at the Portal Project study site. Data includes both abundance and biomass forecasts with associated uncertainty estimates.
DOI: 10.5281/zenodo.17446213
title: Dataset of predictions of which US patents are related  to Artificial Intelligence

description: This is the dataset of predictions for which US patents belong to AI, as part of the research paper entitled "Patent Landscaping Using Document-Class Similarity: The Case of Artificial Intelligence" by Reza Rezazadegan and Mehran Moein. 

For each patent an "AI relevance score" is computed and reported, as well as the prediction of whether it is an AI patent or not. For the ones which belong to AI, a prediction of which AI subdomain the patent belongs to is made as well.
DOI: 10.5281/zenodo.17446212
title: Dataset of predictions of which US patents are related  to Artificial Intelligence

description: This is the dataset of predictions for which US patents belong to AI, as part of the research paper entitled "Patent Landscaping Using Document-Class Similarity: The Case of Artificial Intelligence" by Reza Rezazadegan and Mehran Moein. 

For each patent an "AI relevance score" is computed and reported, as well as the prediction of whether it is an AI patent or not. For the ones which belong to AI, a prediction of which AI subdomain the patent belongs to is made as well.
DOI: 10.15468/dl.mdkpvg
title: Occurrence Download

description: A dataset containing 57515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Artemisia capillaris, Angelica sinensis, Codonopsis pilosula, Conioselinum anthriscoides, Hansenia weberbaueriana, Hansenia forbesii, Dictamnus dasycarpus, Lepidium apetalum, Rubia cordifolia, Angelica dahurica, Lycopodium japonicum, Scutellaria baicalensis, Ephedra equisetina, Rheum tanguticum, Rheum officinale, Trollius chinensis, Piper longum, Sigesbeckia pubescens, Sigesbeckia glabrescens, Clematis chinensis, Clematis hexapetala, Cuscuta chinensis, Cuscuta australis, Pulsatilla chinensis, Polygonatum sibiricum, Polygonatum kingianum, Polygonatum cyrtonema)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 57515 records from 639 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017674-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2q8-wx5-zw8
title: †Productus Sowerby, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3za-x9m-fy1
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cch-bs4-j2t
title: Stacheoceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1tl-dhy-25q
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ad2-yay-6s6
title: Phylloceras

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l00-c15-dhm
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ysn-711-x5k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8nl-mrw-ktz
title: †Hippurites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j3l-34a-x1z
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ew6-tf1-b2p
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kz1-wad-9p7
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/abd-s47-af0
title: †Linoproductus Chao, 1927

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k59-cz0-34k
title: Anthozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0dl-we8-mm1
title: Rhynchonellata Williams, Carlson, Brunton, Holmer & Popov, 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kjd-3vh-q0m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rma-lvk-hkz
title: †Timorocidaris sphaeracantha Wanner, 1920

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qmg-ayq-ng1
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tvv-hr9-5qs
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1bw-84j-65c
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/367-85a-dr3
title: †Gryphaea Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8fp-0a4-01h
title: Umbonium vestiarium (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zlb-54a-tag
title: †Joannites diffissus (Hauer, 1860)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n4w-fc8-xe5
title: Multisparsa d'Orbigny, 1853

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/px9-dlf-7mg
title: †Lamarckina ripleyensis Cushman, 1926

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s8z-jgf-7y2
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/krb-0ah-pv3
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/twv-qp5-d3g
title: †Dictyoclostus Muir-Wood, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ra7-zcc-vkk
title: Thetidites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zjx-8ds-5lp
title: †Pseudoschloenbachia (Pseudoschloenbachia) umbulazi (Baily, 1855)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f1n-hv9-89k
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.24403/jp.1383454
title: Im Tempel / von Wolfgang Struck
DOI: 10.3535/7sq-7zb-hkc
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nn6-dwh-q5t
title: Terebratulina d'Orbigny, 1847

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wgs-czs-q91
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yve-z0k-az8
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nfd-6lx-n0t
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nq5-se9-9gn
title: †Ammonoidea

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q0q-h68-zgn
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x13-fah-bb6
title: †Arcestes czoernigi von Mojsisovics, 1875

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7v9-0sq-w9p
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/365-225-qwr
title: †Nassarius tambacanus (K. Martin, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hab-xsk-6eb
title: Dichotomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3dn-aq9-82x
title: Amaltheus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.h6mq2z
title: Occurrence Download

description: A dataset containing 18576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Melastomataceae"
 ]
}

 The dataset includes 18576 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007150-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18431293
title: HITL-RAG Faithfulness Evaluation Dataset for Cultural Tourism Information (Version 1.1)

description: This dataset supports the evaluation of faithfulness in Retrieval-Augmented Generation (RAG) systems applied to cultural tourism information, with an explicit focus on Human-in-the-Loop (HITL) governance. It is designed as an evaluation artifact rather than a performance benchmark, emphasizing traceability, grounding fidelity, and decision transparency.

The dataset consists of structured query–response evaluations, including retrieved text chunks, candidate answers generated by a RAG-based language model, reference explanations produced by an LLM-based judge, automatic similarity metrics, and final human evaluation decisions. Faithfulness is assessed with respect to curated cultural knowledge chunks, while system-level fallback and failure-trapping mechanisms are explicitly separated from content-level grounding.

A structured HITL error taxonomy (E0–E10) is applied to distinguish faithful responses, controlled abstentions, content errors, and system failures. Repeated queries are intentionally included to observe consistency across evaluation cycles, allowing analysis of generative variation while maintaining stable classification outcomes under human judgment.

Versioning follows a snapshot-based policy to ensure reproducibility and cross-version comparison. This release (Version 1.1) is deposited under embargo and will be made publicly accessible following completion of the associated journal publication.