cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.621h4/3
title: Three-model model-selection support data files for Kope and Waynesville Formation samples, stratigraphic section, member, and formation aggregates

description: File is in comma-separated value (.csv) format. The first five columns describe the Paleobiology Database collection identification number, scale (hand sample, stratigraphic section, etc.) of the sample, and stratigraphic/section names. Columns 6–14 list sample size (S, species richness) and values for eight disparity statistics (with NA designating when a statistic could not be calculated, because there were fewer than four unique life habits in the sample); see text for descriptions and abbreviations of statistics. The last column identifies which model has the best support among those candidates considered. The remaining columns list the classification-tree support each sample has for each candidate model considered. emp3-modelfits.csv lists model support for the tree trained on 50%, 90%, and 100% training data.
DOI: 10.5061/dryad.621h4/4
title: Five-model model-selection support data files for Kope and Waynesville Formation samples, stratigraphic section, member, and formation aggregates

description: File is in comma-separated value (.csv) format. The first five columns describe the Paleobiology Database collection identification number, scale (hand sample, stratigraphic section, etc.) of the sample, and stratigraphic/section names. Columns 6–14 list sample size (S, species richness) and values for eight disparity statistics (with NA designating when a statistic could not be calculated, because there were fewer than four unique life habits in the sample); see text for descriptions and abbreviations of statistics. The last column identifies which model has the best support among those candidates considered. The remaining columns list the classification-tree support each sample has for each candidate model considered. emp5-modelfits.csv lists model support for the tree trained on 50%, 75%, 90%, 95%, and 100% training data.
DOI: 10.5061/dryad.63h33/1
title: Type I EST_SSR

description: Zip file containing 194 excel file with the EST-SSR and primers information for the 193 IUCN plant genera and one file for Arabidopsis.
DOI: 10.5061/dryad.65cq4/1
title: Bayandala_JEcol_rawdata
DOI: 10.5061/dryad.707td/1
title: Scripts

description: Scripts to replicate validation, benchmarking and test-case study.
DOI: 10.5061/dryad.707td/2
title: Appendix 1: Lineage counts sampling strategy implemented in SimPhy

description: Supplementary text describing the novel strategy used by SimPhy to sample lineage counts during the simulation of gene trees under the multilocus coalescent model.
DOI: 10.5061/dryad.707td/3
title: Supplementary figures
DOI: 10.5061/dryad.72t83/1
title: Full text

description: Papers whose full text has been retrived for the possible selection in the systematic review
DOI: 10.5061/dryad.7vs7r/1
title: Dynamic data from gull flights between England and breeding colony on Texel, NL

description: This data describes GPS data from goal-directed flights by lesser black-backed gulls between England and their breeding colony on Texel, NL. Locations, time since departure, flight speeds, flight mode and orientation are described, as well as simulated flights based on optimal orientation (OO), full compensation for wind drift (FC) and goal orientation (GO). See paper (particularly Table 2) for details.
DOI: 10.5061/dryad.8g940/1
title: Test phase biomass data per gridcell

description: This file containst shoot and root biomass data for each gridcell per container in the spatial PSF experiment.
DOI: 10.5061/dryad.8g940/2
title: Shoot biomass in the conditioning phase (phase 1)

description: Provides biomass per container for each of the six species at the end of the conditioning phase.
DOI: 10.5061/dryad.95tv3/1
title: DIYABC_infile
DOI: 10.5061/dryad.95tv3/2
title: DIYABC - All scenarios
DOI: 10.5061/dryad.95tv3/3
title: DIYABC - Six best scenarios
DOI: 10.5061/dryad.95tv3/4
title: Color-pattern data: Banded-striped transect
DOI: 10.5061/dryad.9fr76/1
title: Data and scripts from Mesozoic tetrapod diversification

description: Data and scripts from: Near-stasis in the long-term diversification of Mesozoic tetrapodsRoger B. J. Benson, Richard J. Butler, John Alroy, Philip D. Mannion, Matthew T. Carrano, Graeme T. LloydPLOS Biology, 2016
DOI: 10.5061/dryad.c6829/1
title: Raymond Shapiro raw  bioassay and other data

description: This is an excel file with data on baseline bioassays, passage 6 and 12 bioassays, reproductive rate assays, and number of founders per host in the different treatments.
DOI: 10.5061/dryad.cc8m5/1
title: Morphological measurements on Ehrhardina voigti gen. nov.

description: Summary of morphological measurements on Ehrhardina voigti gen. et sp. nov. SEM images were analysed using the image-processing program ImageJ.
DOI: 10.5061/dryad.cc8m5/2
title: Morphological measurements on Ehrardina pikeae gen. et sp. nov.

description: Summary of morphological measurements on Ehrhardina pikeae gen. et sp. nov. SEM images were analysed using the image-processing program ImageJ.
DOI: 10.5061/dryad.cq83b/1
title: Bailey and van de Pol Literature search data

description: The .csv file contains information on papers published on 'extreme climatic events' or ECEs available on Web of Science. Data includes number of ECEs considered, type of study organism (e.g. plant, animal), and whether or not ECEs were effectively defined within the paper. All data on the ECE literature was collected using a literature analysis conducted in Web of Science with the term extreme* climatic* event*. We considered any studies that investigated the ecological impacts of ECEs and recorded the number of ECEs encompassed by each study. We used any ECE as defined by the author, as we were more interested in the number of events covered than the specific way in which they were defined. Review papers and meta-analyses were excluded. We found 243 studies, with the earliest study published in 1991.
DOI: 10.5061/dryad.ct140/10
title: output of results for initial MCM7 analysis with ML
DOI: 10.5061/dryad.ct140/11
title: output of results for initial ITS analysis with ML
DOI: 10.5061/dryad.ct140/12
title: output of results for initial ITS+McM7 analysis with M_combined
DOI: 10.5061/dryad.ct140/6
title: input dataset for mtSSU ML analysis
DOI: 10.5061/dryad.ct140/7
title: input dataset for ITS+MCM7 combined ML analysis
DOI: 10.5061/dryad.ct140/8
title: input dataset for ITS+MCM7 combined BI analysis
DOI: 10.5061/dryad.ct140/9
title: output of results for initial mtSSU analysis with ML
DOI: 10.5061/dryad.f37d0/1
title: Data Set of Local Pain Dynamics during Constant Exhaustive Exercise

description: The group pulled probabilities of locations with pain or discomfort during  running (left) and cycling (right) tasks in 5 temporal windows in a given sample (n = 11) are observed in  the first sheet of excel  and is named Fig.2.The following 22 sheets of excel, provide a data matrix of 11 participants who performed two tasks cycling and running. The last letter of each participants' data matrix is identified by the abbreviation of the used equipment - bike (b) or treadmill (t). Row headers identifies 50 body locations of the body map while column headers identifies the number of the obtained prompt.  All locations for each participant were transformed to binary vectors, where 1 means presence of discomfort and/or pain, and 0 – no discomfort or pain, in order to obtain the time series with topological configuration of the perceived discomfort and/or pain areas while performing the constant cycling and running tasks.
DOI: 10.5061/dryad.f5r7f/1
title: CTD and fish sampling data used in the ms

description: CTD, fishing stations, biological sampling of fish and stomach content data from Ecosystem Surveys carried out in the Norwegian Sea in May and July from 2005 to 2010.
DOI: 10.5061/dryad.f76nv/1
title: CONTRAST tracings
DOI: 10.5061/dryad.f851v/1
title: simulation results

description: Results from model simulations in the study
DOI: 10.5061/dryad.gd6fk/1
title: Malaria infection status and intensity and great tit host morphological data to assess local adaptation between great tit and malaria

description: These data were collected from great tits for a reciprocal transplant experiment that took place in the Canton de Vaud, Switzerland in the summer of 2013. Bird:  ring number. Release Cage: the aviary that birds were released in. Treatment: mal = malarone, pbs= control with phosphate buffered saline. Block: which block birds were in. Nest: the nest of origin of each bird. Site_origin: the site that each bird originated from. Release_site: the site where birds were released (in aviaries for the experiment). Wing_end: wing measurement at the end of the experiment. Tars_end: tarsus length at the end of the experiment. Wgt_end: weight at the end of the experiment. Haem_end: haematocrit at the end of the experiment. Temp_end: temperature at the end of the experiment. July_dayinf: the date that birds got infected (number of days since July 1st). July_dayend: the date of the end of the experiment (number of days since July 1st). inf_end: whether birds were infected at the end of the experiment. logr: log parasitaemia at the end of the experiment (for formula see main text). membr_resist_end: oxidative stress measurement as membrane resistance at the end of the experiment. Wing_max: wing length when infection was at its peak. Tarsus_max: tarsus length at the peak	of infection. Wgt_max: the weight at the peak of infection. Haem_max: haematocrit at the peak of infection. Temp_max: the temperature at the peak of infection. membr_resist_max: oxidative stress measurement as membrane resistance at the peak of infection. July_daymax: 	date at which the maximum parasitaemia was recorded (in number of days since July 1st). logr_max: log parasitaemia at the end of the experiment (for formula see main text)
DOI: 10.5061/dryad.j2qr4/1
title: Reef-fish population vectors

description: This dataset contains data on: abundance (individuals/m^2), standing biomass (g/ind), size-corrected biomass (g^alpha/ind), trophic group (herbivore, omnivore, planktivore, invertivore, piscivore), time-averaged temperature kinetics, community-level species richness (# of species) and sampling area (m^2). This dataset was collected by visual counts of 5609 populations of reef fishes spread across 49 sites around tropical and subtropical seas (see publication for full methods description).
DOI: 10.5061/dryad.jb235/1
title: InequalityDataCleaned
DOI: 10.5061/dryad.k7c3v/1
title: Individual (adult) mark-recapture histories for the 1994-1999 period (species = AKEP)

description: Data used as input for the IPM, here in the MARK format.
DOI: 10.5061/dryad.k7c3v/2
title: Actual annual female abundance for the 1994-1999 period (species = AKEP)

description: We fitted species-specific state-space models for annual abundance data over the 1987-2008 period outside the IPM, and used the 1994-1999 error-filtered female abundance as input to the IPM (data presented here).
DOI: 10.5061/dryad.k7c3v/3
title: Individual (adult) mark-recapture histories for the 1994-1999 period (species = AKIP)

description: Data used as input for the IPM, here in the MARK format.
DOI: 10.5061/dryad.k7c3v/4
title: Actual annual female abundance for the 1994-1999 period (species = AKIP)

description: We fitted species-specific state-space models for annual abundance data over the 1987-2008 period outside the IPM, and used the 1994-1999 error-filtered female abundance as input to the IPM (data presented here).
DOI: 10.5061/dryad.k7c3v/5
title: Individual (adult) mark-recapture histories for the 1994-1999 period (species = APAP)

description: Data used as input for the IPM, here in the MARK format.
DOI: 10.5061/dryad.k7c3v/6
title: Actual annual female abundance for the 1994-1999 period (species = APAP)

description: We fitted species-specific state-space models for annual abundance data over the 1987-2008 period outside the IPM, and used the 1994-1999 error-filtered female abundance as input to the IPM (data presented here).
DOI: 10.5061/dryad.k7c3v/7
title: Individual (adult) mark-recapture histories for the 1994-1999 period (species = ELEP)

description: Data used as input for the IPM, here in the MARK format.
DOI: 10.5061/dryad.k7c3v/8
title: Actual annual female abundance for the 1994-1999 period (species = ELEP)

description: We fitted species-specific state-space models for annual abundance data over the 1987-2008 period outside the IPM, and used the 1994-1999 error-filtered female abundance as input to the IPM (data presented here).
DOI: 10.5061/dryad.kp400/1
title: Anchored loci probe design information

description: The alignments of probe regions, probes, and probe region coordinates used to generate the anchored loci for the pseudoxyrhophiine dataset, as described in the methods of the manuscript.
DOI: 10.5061/dryad.kp400/2
title: Datasets used for analyses

description: This zip files contains the Sanger and NGS alignments, information for the Robinson-Foulds distances for all trees, the gene trees for both the Sanger and NGS alignments, resulting trees from phylogenetic analyses, and the complete MetaTree analysis data.
DOI: 10.5061/dryad.m7n13/1
title: Raw Data

description: Birth orders and reproduction schedules (number of offspring released per day) for the focal fronds of Lemna minor used in our study.
DOI: 10.5061/dryad.m7n13/2
title: R Scripts (Analysis)

description: R scripts to reproduce the statistical analyses presented in our paper.
DOI: 10.5061/dryad.m7n13/3
title: R Scripts (Figures)

description: R scripts to reproduce the figures in our paper
DOI: 10.5061/dryad.nt722/3
title: Consensus sequences of the three repeated outliers

description: Consensus sequences of the three mini-contigs assembled around the repeated outlier SNPs.
DOI: 10.5061/dryad.tn20t/10
title: SSF_ImmediateFlight_NextNight

description: Data used to asses the step selection function (SSF) of zebras using the immediate-flight tactic the next night after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, cluster = id of the cluster (group of non independent strata) used for robust variance, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, Step Length = length of the step in m.
DOI: 10.5061/dryad.tn20t/6
title: SSF_ImmediateFlight_Immediately

description: Data used to asses the step selection function (SSF) of zebras using the immediate-flight tactic immediately after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, Step Length = length of the step in m.
DOI: 10.5061/dryad.tn20t/7
title: SSF_DelayedFlight_NextDay

description: Data used to asses the step selection function (SSF) of zebras using the delayed-flight tactic the next day after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, cluster = id of the cluster (group of non independent strata) used for robust variance, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, Step Length = length of the step in m.
DOI: 10.5061/dryad.tn20t/8
title: SSF_DelayedFlight_NextNight

description: Data used to asses the step selection function (SSF) of zebras using the delayed-flight tactic the next night after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, cluster = id of the cluster (group of non independent strata) used for robust variance, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, Step Length = length of the step in m.
DOI: 10.5061/dryad.tn20t/9
title: SSF_ImmediateFlight_NextDay

description: Data used to asses the step selection function (SSF) of zebras using the immediate-flight tactic the next day after an encounter with lions (question 4). Column headings: id = id of zebra, FakeTime = 2-case, case = binary variable with 1 for an observed step and 0 for a random step, strata = id of the stratum where an observed step is paired with 10 random steps, cluster = id of the cluster (group of non independent strata) used for robust variance, TacticCont = categorical variable indicating if the step occurred after an encounter ("Tactic") or during the proactive phase ("Control"), Grassland = binary variable with 1 if the step ended in grassland and 0 if not, Bushland-1 = binary variable, Bushland-2 = binary variable, Bushland-3 = binary variable, Woodland = binary variable, Spline1-4 = spline variable for step length in m, Step Length = length of the step in m.
DOI: 10.5061/dryad.tp0d0/1
title: Field experiment plant-pollinator data 2011

description: 2011 pollinator survey data from the field experiment (North Wyke Wide-scale Enhancement of Biodiversity Project) including dates, grassland plot treatments, survey times, plant species and the associated visiting pollinator species. Each row shows a plant-pollinator interaction.
DOI: 10.5061/dryad.tp0d0/2
title: Farm pollinator data 2012

description: 2012 grassland pollinator survey data across 10 farms (20 fields). Each row shows a plant-pollinator interaction surveyed on the fields of each farm.
DOI: 10.5061/dryad.014v6/1
title: Scabies_Repository_final

description: Scabies infestation status of human participants from a remote Aboriginal community in Northern Australia.
DOI: 10.5061/dryad.1j002/2
title: Dungweights
DOI: 10.5061/dryad.1j002/3
title: GrassGrowth
DOI: 10.5061/dryad.1j002/4
title: CumulativeWeight
DOI: 10.5061/dryad.1tf47/3
title: Supplemental File 5 - Analytical Procedural Adjustments

description: An update on the analytical procedures run on the trace fossils.
DOI: 10.5061/dryad.1tf47/4
title: Supplemental File 6 - Network Tortuosity Script

description: Updated Matlab network tortuoisty script.
DOI: 10.5061/dryad.1tf47/5
title: Supplemental File 7 - Analysis Consistency Test

description: A test to determine analysis consistency of the trace fossil analyses.
DOI: 10.5061/dryad.2qb35/3
title: mtDNA_con

description: This is a consensus tree generated from the BEAST run of  the mitochondrial DNA data.
DOI: 10.5061/dryad.2qb35/4
title: R1R2_pileup_simple

description: This is a nexus file that includes concatenated data from cloned and directly amplified sequences of the autosomal genes RAG1 and RAG2.  These data were generated from genomic DNA and the concatenation combines sequences that are putatively syntenous (co-linear) on the same chromosome.
DOI: 10.5061/dryad.59s7t/1
title: data

description: Data for various parts of the paper are contained in appropriate directories, and include matlab files for plotting where appropriate.
DOI: 10.5061/dryad.5r6pq/1
title: Bee community data frame

description: Bee species by site data frame as comma delimited .csv file
DOI: 10.5061/dryad.5r6pq/2
title: Beetle community data frame

description: Beetle species by site data frame as comma delimited .csv file
DOI: 10.5061/dryad.5r6pq/3
title: Environmental variables

description: Environmental variables by site data frame as comma delimited .csv file
DOI: 10.5061/dryad.5r6pq/4
title: Variables used to calculate regrowth

description: Additional environmental variables used to calculate the degree of regrowth (shading) in power line clearings. The file consists of a variables by site data frame and is comma delimited in .csv file format
DOI: 10.5061/dryad.5sh35/1
title: GRW winter malaria data

description: This file consists of data collected from great reed warblers at a Zambian study site. Information includes malaria prevalence, lineage, infection intensity, individual sex, age (1 = juvenile, 2 = adult), scaled mass index, BUTY, TRIG, departure date, whether males sang in Zambia or not, syllable repertoire size, and winter territory size (minimum convex polygons).
DOI: 10.5061/dryad.6v79q/1
title: Mitonuclear line female reproductive traits

description: This file contains data on mitonuclear line female fecundity, fertility and weight.
DOI: 10.5061/dryad.6v79q/2
title: Mitonuclear line female lifespan

description: This file contains data on mitonuclear line female lifespan and lifetime fecundity.
DOI: 10.5061/dryad.75s51/1
title: Data from: Citizen science program shows urban areas have lower occurrence of frog species, but not accelerated declines

description: This contains all data necessary to duplicate the analyses described by Westgate et al., including: descriptions of all sites; all observations of frogs at those sites between 2002-2014; a list of species names; and a key to column headings.
DOI: 10.5061/dryad.79b39/1
title: male care and immature fitness

description: please see read me file for further explanations
DOI: 10.5061/dryad.8g940/3
title: Soil chemistry of conditioning phase

description: Contains soil abiotic parameters measured at the end of the conditioning phase (phase 1), soil conditoning by six species.
DOI: 10.5061/dryad.8qm34/1
title: AVION DATOS SENESCENCIA_revisados

description: An excel file containing data from longitudinal study in house martins across 13 years of study
DOI: 10.5061/dryad.90708/1
title: Species richness counts & climate and tree measurements

description: Species richness, location, Openness and Circumference data was collected in the field. Climate data was obtained from BioClim. Columns: Country: Norway or Sweden. OakID: Unique tree identifier number. UTM33_X and UTM33_Y: co-ordinates for each tree location in UTM33. Circumference: Girth of the tree at breast height. Openness: Openness of tree canopy (see paper for description). MeanTempWarmestQuart - mean temperature during the warmest quarter of the year. MeanPrecipWarmestQuart - mean precipitation during the warmest quarter of the year. NorthernSpecialist - OtherGeneralist: species richness counts per tree. See paper for category descriptions.
DOI: 10.5061/dryad.95tv3/10
title: Mate choice data: Banded/striped, plastic model experiment
DOI: 10.5061/dryad.95tv3/11
title: Microsatellite data: Banded-striped transect
DOI: 10.5061/dryad.95tv3/12
title: Microsatellite data: Spotted-striped transect
DOI: 10.5061/dryad.95tv3/5
title: Color-pattern data: Spotted-striped transect
DOI: 10.5061/dryad.95tv3/6
title: clineSolver
DOI: 10.5061/dryad.95tv3/7
title: Male mass (g) data