cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22793513
title: Supporting files generated during the genome project of Baronia brevicornis from "The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolution"

description: These files are part of the manuscript:The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolutionAlba Marino 1,†, Eliette L. Reboud 1†, Emmanuelle Chevalier 1, Marie-Ka Tilak 1, Jorge Contreras-Garduño 2, Benoit Nabholz 1,3† and Fabien L. Condamine 1,*†1 Institut des Sciences de l’Evolution de Montpellier (Université de Montpellier | CNRS | IRD | EPHE), Place Eugène Bataillon, 34095 Montpellier, France2 Universidad Nacional Autónoma de México, Escuela Nacional de Estudios Superiores, campus Morelia, Antigua Carretera a Pátzcuaro #8701, Col. Ex-Hacienda San José de la Huerta, 58190 Morelia, Michoacán, Mexico3 Institut Universitaire de France (IUF), Paris, France† These authors contributed equally.Genome assembly is available here : https://www.ncbi.nlm.nih.gov/nuccore/JASFAT000000000.1/Files descriptions:<br>Baronia_brevicornis_FC897_final_version.fasta_masked.fasta : Masked genome assemblyBaronia_brevicornis_FC897_braker2.gtf : GTF file of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.codingseq.fasta : CDS of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.proteins.fasta : Proteins of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_rnd3.all.maker.noseq.gff : GFF3 file of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.proteins.fasta : Proteins of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.transcripts.fasta : CDS of the annotation performed with MAKER pipelinecreateMaskFile.py is a python script to create mask files for MSMC2. Usage : python3 createMaskFile.py coverage_file.txt 15 100 contig_name output.bed.gz. The coverage_file.txt is create using "samtools depth" program.AlgnRM2Fasta : is a program to extract the alignment of TE sequences with their sequence consensus from RepeatMaskerNucleodite_diversity_coding_sequences_scripts.zip : Script and program compute the synonymous, non-synonymous and four-fold degenerated sites nucleotide diversity
DOI: 10.6084/m9.figshare.22793513.v1
title: Supporting files generated during the genome project of Baronia brevicornis from "The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolution"

description: These files are part of the manuscript:The genome of the short-horned baronia (Baronia brevicornis), an endangered relict and key lineage in swallowtail butterfly evolutionAlba Marino 1,†, Eliette L. Reboud 1†, Emmanuelle Chevalier 1, Marie-Ka Tilak 1, Jorge Contreras-Garduño 2, Benoit Nabholz 1,3† and Fabien L. Condamine 1,*†1 Institut des Sciences de l’Evolution de Montpellier (Université de Montpellier | CNRS | IRD | EPHE), Place Eugène Bataillon, 34095 Montpellier, France2 Universidad Nacional Autónoma de México, Escuela Nacional de Estudios Superiores, campus Morelia, Antigua Carretera a Pátzcuaro #8701, Col. Ex-Hacienda San José de la Huerta, 58190 Morelia, Michoacán, Mexico3 Institut Universitaire de France (IUF), Paris, France† These authors contributed equally.Genome assembly is available here : https://www.ncbi.nlm.nih.gov/nuccore/JASFAT000000000.1/Files descriptions:<br>Baronia_brevicornis_FC897_final_version.fasta_masked.fasta : Masked genome assembly Baronia_brevicornis_FC897_braker2.gtf : GTF file of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.codingseq.fasta : CDS of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_braker2.proteins.fasta : Proteins of the annotation performed with BRAKER2 pipelineBaronia_brevicornis_FC897_rnd3.all.maker.noseq.gff : GFF3 file of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.proteins.fasta : Proteins of the annotation performed with MAKER pipelineBaronia_brevicornis_FC897_rnd3.all.maker.transcripts.fasta : CDS of the annotation performed with MAKER pipelinecreateMaskFile.py is a python script to create mask files for MSMC2. Usage : python3 createMaskFile.py coverage_file.txt 15 100 contig_name output.bed.gz. The coverage_file.txt is create using "samtools depth" program.AlgnRM2Fasta : is a program to extract the alignment of TE sequences with their sequence consensus from RepeatMaskerNucleodie_diversity_coding_sequences_scripts.zip : Script and program compute the synonymous, non-synonymous and four-fold degenerated sites nucleotide diversity
DOI: 10.5281/zenodo.8350070
title: Factors Associated with Scientific Production Citations in Dentistry: Zero-inflated Negative Binomial Regression and Hurdle Modelling

description: <strong>Abstract:</strong> The global scientific literature in dentistry has shown important advances in the field, with major contributions ranging from the analysis of the basic epidemiological aspects of prevention to specialised results in the field of dental treatments. The present investigation aims to analyse the current state of the scientific literature on dentistry hosted in the Web of Science database. The methodology includes two phases in the analysis of articles and indexed reviews in all thematic areas. During the first phase, the following variables are analysed: scientific production by the publisher, the evolution of scientific output published by publishers, the factors associated with the impact of scientific production, and the modelling of the impact of scientific production on dentistry. During the second phase, associations, evolutions, and trends in the use of main keywords in the scientific literature in dentistry are analysed. In conclusion, the study shows that the most studied topics include the association of dental education and the curriculum, the association of pediatric dentistry with oral health, and dental care. The findings show that more recently emphasised topics also stand out, such as evidence-based dentistry, the pandemic, infection control, and endodontics, as well as the need for future research to expand current knowledge based on emerging topics in the scientific literature on dentistry.
DOI: 10.5281/zenodo.8387311
title: Factors Associated with Scientific Production Citations in Dentistry: Zero-inflated Negative Binomial Regression and Hurdle Modelling

description: <strong>Abstract:</strong> The global scientific literature in dentistry has shown important advances in the field, with major contributions ranging from the analysis of the basic epidemiological aspects of prevention to specialised results in the field of dental treatments. The present investigation aims to analyse the current state of the scientific literature on dentistry hosted in the Web of Science database. The methodology includes two phases in the analysis of articles and indexed reviews in all thematic areas. During the first phase, the following variables are analysed: scientific production by the publisher, the evolution of scientific output published by publishers, the factors associated with the impact of scientific production, and the modelling of the impact of scientific production on dentistry. During the second phase, associations, evolutions, and trends in the use of main keywords in the scientific literature in dentistry are analysed. In conclusion, the study shows that the most studied topics include the association of dental education and the curriculum, the association of pediatric dentistry with oral health, and dental care. The findings show that more recently emphasised topics also stand out, such as evidence-based dentistry, the pandemic, infection control, and endodontics, as well as the need for future research to expand current knowledge based on emerging topics in the scientific literature on dentistry.
DOI: 10.5281/zenodo.8350069
title: Factors Associated with Scientific Production Citations in Dentistry: Zero-inflated Negative Binomial Regression and Hurdle Modelling

description: <strong>Abstract:</strong> The global scientific literature in dentistry has shown important advances in the field, with major contributions ranging from the analysis of the basic epidemiological aspects of prevention to specialised results in the field of dental treatments. The present investigation aims to analyse the current state of the scientific literature on dentistry hosted in the Web of Science database. The methodology includes two phases in the analysis of articles and indexed reviews in all thematic areas. During the first phase, the following variables are analysed: scientific production by the publisher, the evolution of scientific output published by publishers, the factors associated with the impact of scientific production, and the modelling of the impact of scientific production on dentistry. During the second phase, associations, evolutions, and trends in the use of main keywords in the scientific literature in dentistry are analysed. In conclusion, the study shows that the most studied topics include the association of dental education and the curriculum, the association of pediatric dentistry with oral health, and dental care. The findings show that more recently emphasised topics also stand out, such as evidence-based dentistry, the pandemic, infection control, and endodontics, as well as the need for future research to expand current knowledge based on emerging topics in the scientific literature on dentistry.
DOI: 10.5281/zenodo.8407879
title: Factors Associated with Scientific Production Citations in Dentistry: Zero-inflated Negative Binomial Regression and Hurdle Modelling

description: <strong>Abstract:</strong> The global scientific literature in dentistry has shown important advances in the field, with major contributions ranging from the analysis of the basic epidemiological aspects of prevention to specialised results in the field of dental treatments. The present investigation aims to analyse the current state of the scientific literature on dentistry hosted in the Web of Science database. The methodology includes two phases in the analysis of articles and indexed reviews in all thematic areas. During the first phase, the following variables are analysed: scientific production by the publisher, the evolution of scientific output published by publishers, the factors associated with the impact of scientific production, and the modelling of the impact of scientific production on dentistry. During the second phase, associations, evolutions, and trends in the use of main keywords in the scientific literature in dentistry are analysed. In conclusion, the study shows that the most studied topics include the association of dental education and the curriculum, the association of pediatric dentistry with oral health, and dental care. The findings show that more recently emphasised topics also stand out, such as evidence-based dentistry, the pandemic, infection control, and endodontics, as well as the need for future research to expand current knowledge based on emerging topics in the scientific literature on dentistry.
DOI: 10.5517/ccdc.csd.cc1z5fl5
title: CCDC 1822477: Experimental Crystal Structure Determination

description: Related Article: Chunying Zou, Zengmian Wang, Xiumin Ren, Rongrui Li, Shuping Zhang, Baoying Sheng|2018|Inorg.Chem.Commun.|91|91|doi:10.1016/j.inoche.2018.03.007
description: Related Article: Meng Qinghua|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc201zqs
title: CCDC 1848955: Experimental Crystal Structure Determination

description: Related Article: Xiao-Dong Liu, Zhong-Lan Hou|2018|Inorg.Chem.Commun.|95|78|doi:10.1016/j.inoche.2018.07.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20br37
title: CCDC 1857368: Experimental Crystal Structure Determination

description: Related Article: Yu-Ying Tian, Zhi-Guo Xin, Hai-Feng Hou, Xiao-Chun Zhu, Qian Guo, Qin Xiao|2019|J.Mol.Struct.|1198|126937|doi:10.1016/j.molstruc.2019.126937
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20br59
title: CCDC 1857370: Experimental Crystal Structure Determination

description: Related Article: Yu-Ying Tian, Zhi-Guo Xin, Hai-Feng Hou, Xiao-Chun Zhu, Qian Guo, Qin Xiao|2019|J.Mol.Struct.|1198|126937|doi:10.1016/j.molstruc.2019.126937
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc211whh
title: CCDC 1878646: Experimental Crystal Structure Determination

description: Related Article: Yu-Hua Wang,  Jian-Jun Li,  Yong-Qing Li|2019|J.Cluster Sci.|30|469|doi:10.1007/s10876-019-01509-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc211wjj
title: CCDC 1878647: Experimental Crystal Structure Determination

description: Related Article: Yu-Hua Wang,  Jian-Jun Li,  Yong-Qing Li|2019|J.Cluster Sci.|30|469|doi:10.1007/s10876-019-01509-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc214qyw
title: CCDC 1881388: Experimental Crystal Structure Determination

description: Related Article: Long-Gang Yu, Yu-Guo Sun, Zhi-Liang Wang|2019|J.Mol.Struct.|1180|209|doi:10.1016/j.molstruc.2018.11.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc214qzx
title: CCDC 1881389: Experimental Crystal Structure Determination

description: Related Article: Long-Gang Yu, Yu-Guo Sun, Zhi-Liang Wang|2019|J.Mol.Struct.|1180|209|doi:10.1016/j.molstruc.2018.11.063
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21wymj
title: CCDC 1903698: Experimental Crystal Structure Determination

description: Related Article: Peng Wang, Qian-Qian Hou, Xiu-Li Cui, Guang-Dong You|2019|J.Mol.Struct.|1193|62|doi:10.1016/j.molstruc.2019.04.131
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21wynk
title: CCDC 1903699: Experimental Crystal Structure Determination

description: Related Article: Peng Wang, Qian-Qian Hou, Xiu-Li Cui, Guang-Dong You|2019|J.Mol.Struct.|1193|62|doi:10.1016/j.molstruc.2019.04.131
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21yfct
title: CCDC 1905116: Experimental Crystal Structure Determination

description: Related Article: Fengdi Cao, Chuanliang Shu, Beibei Ni, Zhenhua Gao|2020|J.Mol.Struct.|1200|127142|doi:10.1016/j.molstruc.2019.127142
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21yfdv
title: CCDC 1905117: Experimental Crystal Structure Determination

description: Related Article: Fengdi Cao, Chuanliang Shu, Beibei Ni, Zhenhua Gao|2020|J.Mol.Struct.|1200|127142|doi:10.1016/j.molstruc.2019.127142
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc222mmf
title: CCDC 1909154: Experimental Crystal Structure Determination

description: Related Article: Jian-Ming Tang,  Wan-Ting Fan,  Po-Yi Chu,  Dong-Lei Wu,  Feng-Di Cao,  Ye Zhang|2020|J.Cluster Sci.|31|197|doi:10.1007/s10876-019-01636-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc222mng
title: CCDC 1909155: Experimental Crystal Structure Determination

description: Related Article: Jian-Ming Tang,  Wan-Ting Fan,  Po-Yi Chu,  Dong-Lei Wu,  Feng-Di Cao,  Ye Zhang|2020|J.Cluster Sci.|31|197|doi:10.1007/s10876-019-01636-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc226kjd
title: CCDC 1912933: Experimental Crystal Structure Determination

description: Related Article: Lei Wang, Gui-Bin Xue|2019|J.Mol.Struct.|1198|126919|doi:10.1016/j.molstruc.2019.126919
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc226y9k
title: CCDC 1913298: Experimental Crystal Structure Determination

description: Related Article: Ya-Ming Xi,  Zhuan-Zhen Ma,  Li-Na Wang,  Ming Li,  Zi-Jian Li|2019|J.Cluster Sci.|30|1455|doi:10.1007/s10876-019-01589-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc227jrm
title: CCDC 1913870: Experimental Crystal Structure Determination

description: Related Article: Rong Li,  Yan-Na Yue,  Jing Sun,  Ye Fang,  Xiao-Hong Ge,  Li-Ping Zhang|2019|J.Cluster Sci.|30|1683|doi:10.1007/s10876-019-01615-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc227ntt
title: CCDC 1913996: Experimental Crystal Structure Determination

description: Related Article: Yan Liu,  Xue-Ling Ao,  Pi-Qi Jiao,  Fei Wang,  Ling Ma|2020|J.Cluster Sci.|31|109|doi:10.1007/s10876-019-01622-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc227vy4
title: CCDC 1914186: Experimental Crystal Structure Determination

description: Related Article: Xin-Chun Lu,  Hui-Ling Wang,  Xin Wang,  Qi-Zhi Li,  Li Liao|2019|J.Cluster Sci.|30|1673|doi:10.1007/s10876-019-01614-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21zxpn
title: CCDC 1906552: Experimental Crystal Structure Determination

description: Related Article: Di Wu, Liang Guo, Si-Jie Li|2020|J.Mol.Struct.|1199|126938|doi:10.1016/j.molstruc.2019.126938
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.