cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.14288/1.0392861
title: Predicting mortality in children with infectious diseases (dataset)~Smart Discharge

description: De-identified data and associated data dictionary for two studies within the Smart Discharges program.
DOI: 10.14288/1.0397873
title: Data from: Spatial patterns and rarity of the white-phased ‘Spirit Bear’ allele reveals gaps in habitat protection

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Preserving genetic and phenotypic diversity can help safeguard not only biodiversity but also cultural and economic values.&lt;/p&gt; &lt;p&gt;Here, we present data that emerged from Indigenous-led research at the intersection of evolution and ecology to support conservation planning of a culturally salient, economically valuable, and rare phenotypic variant. We addressed three conservation objectives for the white-phased ‘Spirit bear’ polymorphism, a rare and endemic white-coated phenotype of black bear (Ursus americanus) in Kitasoo/Xai’xais and Gitga’at Territories and beyond in coastal British Columbia, Canada. First, we used non-invasively collected hair samples (n = 385 bears over ~18,000 km&lt;sup&gt;2&lt;/sup&gt;) to assess the spatial variation in the frequency of the allele that controls the white-coloured morph (mc1r). Second, we compared our observed allele frequencies at mc1r with those expected under Hardy-Weinberg equilibrium. Finally, we examined how well current protected areas in the region aligned with spatial hotspots of Spirit bear alleles.&lt;/p&gt; &lt;p&gt;We found that landscape-level allele frequency was lower than previously reported. For example, our systematic sampling estimated a frequency of 0.25 (95% CI 0.13-0.41) on Gribbell Island compared with the previously reported estimate of 0.56. Also, in contrast with previous reports, we failed to detect a statistically significant departure from Hardy-Weinberg equilibrium at mc1r, which calls into question the previously-posited role of homozygote gene flow, heterozygote disadvantage, and positive assortative mating in the maintenance of this polymorphism. Finally, we found a discrepancy between the placement of protected areas and the 90th percentile hotspots (upper 10% of all estimated values) of Spirit bear alleles, with ~50% of hotspots falling outside of protected areas.&lt;/p&gt; &lt;p&gt;These results provide new insight into hypotheses related to the maintenance of this rare polymorphism, and directly relevant information to support evidence-based opportunities for Indigenous Nations of the area to attend to gaps in conservation planning.&lt;/p&gt;
DOI: 10.14288/1.0397738
title: Data from: RapidRat: development, validation and application of a genotyping-by-sequencing panel for rapid biosecurity and invasive species management

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Invasive alien species (IAS) are among the main causes of global biodiversity loss. Invasive brown (Rattus norvegicus) and black (R. rattus) rats, in particular, are leading drivers of extinction on islands, especially in the case of seabirds where &gt;50% of all extinctions have been attributed to rat predation. Eradication is the primary form of invasive rat management, yet this strategy has resulted in a ~10-38% failure rate on islands globally. Genetic tools can help inform IAS management, but such applications to date have been largely reactive, time-consuming, and costly. Here, we developed a Genotyping-in-Thousands by sequencing (GT-seq) panel for rapid species identification and population assignment of invasive brown and black rats (RapidRat) in Haida Gwaii, an archipelago comprising ~150 islands off the central coast of British Columbia, Canada. We constructed an optimized panel of 443 single nucleotide polymorphisms (SNPs) using previously generated double-digest restriction-site associated DNA (ddRAD) genotypic data (27,686 SNPs) from brown (n=295) and black rats (n=241) sampled throughout Haida Gwaii. The informativeness of this panel for identifying individuals to species and island of origin was validated relative to the ddRAD results; in all comparisons, admixture coefficients and population assignments estimated using RapidRat were consistent. To demonstrate application, 20 individuals from novel invasions of three islands (Agglomerate, Hotspring, Ramsay) were genotyped using RapidRat, all of which were confidently assigned (&gt;98.5% probability) to Faraday and Murchison Islands as putative source populations. These results indicated that a previous eradication on Hotspring Island was conducted at an inappropriate geographic scale; future management should expand the eradication unit to include neighboring islands to prevent re-invasion. Overall, we demonstrated that RapidRat is an effective tool for managing invasive rat populations in Haida Gwaii and provided a clear framework for GT-seq panel development for informing biodiversity conservation in other systems.&lt;/p&gt;
DOI: 10.14288/1.0397557
title: Five-years of ocrelizumab in relapsing multiple sclerosis: OPERA studies open-label extension

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="margin-bottom:4px;"&gt;&lt;b&gt;Objective&lt;/b&gt;&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;To assess over 3 years of follow-up, the effects of maintaining or switching to ocrelizumab (OCR) therapy on clinical and MRI outcomes and safety measures in the open-label extension (OLE) phase of the pooled OPERA studies in relapsing multiple sclerosis.&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;&lt;b&gt;Methods&lt;/b&gt;&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;After 2 years of double-blind, controlled treatment, patients continued OCR (600 mg infusions every 24 weeks) or switched from interferon (IFN) β-1a (44 μg 3 times weekly) to OCR when entering the OLE phase (3 years). Adjusted annualized relapse rate, time to onset of 24-week confirmed disability progression/improvement (CDP/CDI), brain MRI activity (gadolinium-enhanced and new/enlarging T2 lesions), and percentage brain volume change were analyzed.&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;&lt;b&gt;Results&lt;/b&gt;&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;Of patients entering the OLE phase, 88.6% completed Year 5. The cumulative proportion with 24-week CDP was lower in patients who initiated OCR earlier, vs patients initially receiving IFN β-1a (16.1% vs 21.3% at Year 5; &lt;i&gt;p&lt;/i&gt;=0.014). Patients continuing OCR maintained, and those switching from IFN β-1a to OCR attained near complete and sustained suppression of new brain MRI lesion activity from Year 3 to 5. Over the OLE phase, patients continuing OCR exhibited less whole brain volume loss from double-blind study baseline vs those switching from IFN β-1a (–1.87% vs –2.15% at Year 5; &lt;i&gt;p&lt;/i&gt;&lt;0.01). Adverse events were consistent with past reports and no new safety signals emerged with prolonged treatment.&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;&lt;b&gt;Conclusion&lt;/b&gt;&lt;/p&gt; &lt;p style="margin-bottom:4px;"&gt;Compared with patients switching from IFN β-1a, earlier and continuous OCR treatment up to 5 years provided sustained benefit on clinical and MRI measures of disease progression.&lt;/p&gt;
DOI: 10.14288/1.0397731
title: Data for: Low predictability of energy balance traits and leaf temperature metrics in desert, montane, and alpine plant communities

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Leaf energy balance may influence plant performance and community composition. While biophysical theory can link leaf energy balance to many traits and environment variables, predicting leaf temperature and key driver traits with incomplete parameterizations remains challenging. Predicting thermal offsets (δ, Tleaf – Tair difference) or thermal coupling strengths (β, Tleaf vs. Tair slope) is challenging. We ask: 1) whether environmental gradients predict variation in energy balance traits (absorptance, leaf angle, stomatal distribution, maximum stomatal conductance, leaf area, leaf height); 2) whether commonly-measured leaf functional traits (dry matter content, mass per area, nitrogen fraction, δ13C, height above ground) predict energy balance traits; and 3) how traits and environmental variables predict δ and β among species. We address these questions with diurnal measurements of 41 species co-occurring along an 1100 m elevation gradient spanning desert to alpine biomes. We show that 1) energy balance traits are only weakly associated with environmental gradients, and 2) are not well predicted by common functional traits. We also show that 3) δ and β can be partially approximated using interactions among site environment and traits, with a much larger role for environment than traits. The heterogeneity in leaf temperature metrics and energy balance traits challenges larger-scale predictive models of plant performance under environmental change.
DOI: 10.14288/1.0397529
title: Data from: A meta-analysis of global avian survival across species and latitude

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Tropical birds are thought to be longer lived than many temperate species. We explored the idea of higher survival at tropical latitudes and whether extrinsic climate factors and intrinsic traits helped explain this pattern using a meta-analytical approach. The dataset consists of 949 estimates from 204 studies of avian survival from both New World and Old World biogeographical realms.&lt;/p&gt;
DOI: 10.14288/1.0398037
title: Data from: Genotyping-in-Thousands by sequencing reveals marked population structure in Western Rattlesnakes to inform conservation status

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Delineation of units below the species level is critical for prioritizing conservation actions for species at-risk. Genetic studies play an important role in characterizing patterns of population connectivity and diversity to inform the designation of conservation units, especially for populations that are geographically isolated. The northernmost range margin of Western Rattlesnakes (&lt;em&gt;Crotalus oreganus&lt;/em&gt;) occurs in British Columbia, Canada, where it is federally classified as threatened and restricted to five geographic regions. In these areas, Western Rattlesnakes hibernate (den) communally, raising questions about connectivity within and between den complexes. At present, Western Rattlesnake conservation efforts are hindered by a complete lack of information on genetic structure and degree of isolation at multiple scales, from the den to the regional level. To fill this knowledge gap, we used Genotyping-in-Thousands by sequencing (GT-seq) to genotype an optimized panel of 362 single nucleotide polymorphisms (SNPs) from individual samples (n = 461) collected across the snake’s distribution in western Canada and neighboring Washington (USA). Hierarchical STRUCTURE analyses found evidence for population structure within and among the five geographic regions in BC, as well as in Washington. Within these regions, 11 genetically distinct complexes of dens were identified, with some regions having multiple complexes. No significant pattern of isolation-by-distance and generally low levels of migration were detected among den complexes across regions. Additionally, snakes within dens generally were more related than those among den complexes within a region, indicating limited movement. Overall, our results suggest that the single, recognized designatable unit for Western Rattlesnakes in Canada should be re-assessed to proactively focus conservation efforts on preserving total genetic variation detected range wide. More broadly, our study demonstrates a novel application of GT-seq for investigating patterns of diversity in wild populations at multiple scales to better inform conservation management.&lt;/p&gt;
DOI: 10.14288/1.0397580
title: Hidden introductions of freshwater red algae via the aquarium trade exposed by DNA barcodes

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p style="margin-bottom:8px;"&gt;The global aquarium trade can introduce alien freshwater invaders, potentially impacting local aquatic ecosystems and their biodiversity. The role of the aquarium trade in spreading freshwater red macroalgae that hitchhike on ornamental aquatic plants and animals is unassessed. We investigated this human-mediated phenomenon via a broad biodiversity survey and genetic analysis of freshwater red algae in the field and aquarium shops in East Asia.&lt;/p&gt; &lt;p style="margin-bottom:8px;"&gt;&lt;b&gt;Results&lt;/b&gt;&lt;br&gt; We found 26 molecular operational taxonomic units (mOTUs) in Taiwan, some of which are cryptic. Phylogeographical analysis revealed three potential introduced mOTUs in Taiwan, which exhibit no local genetic variation in Taiwan and are distributed across continents. Also, we posit that some presumably endangered freshwater red algae may be preserved in aquaria, an unintentional &lt;i&gt;ex situ&lt;/i&gt; conservation site for these organisms that are vulnerable to water pollution from anthropogenic disturbances.&lt;/p&gt; &lt;p style="margin-bottom:8px;"&gt;&lt;b&gt;Main Conclusions&lt;/b&gt;&lt;br&gt; Collectively, these data suggest that freshwater red algae have been hitchhiking and dispersed via the aquarium trade, an important and overlooked mechanism of introduction of these organisms across the globe.&lt;/p&gt;
DOI: 10.14288/1.0397688
title: Data from Beyond MAP: A guide to dimensions of rainfall variability for tropical ecology

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Tropical ecologists have long recognized rainfall as the key climate filter shaping tropical ecosystem structure and function across space and time. Still, tropical ecologists have historically had a limited toolkit for characterizing rainfall, largely relying on simple metrics like mean annual precipitation (MAP) and dry season length to characterize rainfall regimes that vary along many more dimensions. Here, we review methods for quantifying dimensions of rainfall variability on multiple time scales, with a focus on ecological applications of these methods. We also discuss key considerations for tropical ecologists looking to use rainfall metrics that better align with hypothesized biological or ecological mechanisms or that more effectively describe rainfall variability in the systems we study, and provide a toolkit (R scripts and gridded datasets) to do so. We argue that incorporating more sophisticated approaches to quantify rainfall variability into study design and statistical analyses will enhance our understanding of past, ongoing, and future changes in tropical ecosystems.  &lt;/p&gt;
DOI: 10.14288/1.0394246
title: Procedure policies, data collection form and model consent form (supplemental material)~Improving the Early Diagnosis of Neonatal Sepsis in Malawi

description: Supplemental material (procedure policies, data collection form and model consent form for improving the early diagnosis of neonatal sepsis in Malawi study).
DOI: 10.3535/58n-h77-nyw
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k3n-r18-1n1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fhd-17w-hzy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k6l-0y4-pnh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25239
title: Chandra X-ray Observatory ObsId 25239

description: CRITICAL NEW CONSTRAINTS ON ULX AND LUMINOUS HMXB POPULATIONS IN EXTREME METAL POOR GALAXIES
DOI: 10.3535/x87-fpv-a97
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sln-ylz-nkt
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w8b-m3l-8vg
title: Hibolithes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25251
title: Chandra X-ray Observatory ObsId 25251

description: Toward an FRB Progenitor: Elucidating the FRB-AGN Connection with Chandra
DOI: 10.3535/9x2-2xk-g56
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s0k-tnh-trn
title: Aves

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/46n-gls-kt3
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q9h-gx6-dlj
title: Duvalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7nz-7hb-0r6
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l7p-3tr-hfn
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25258
title: Chandra X-ray Observatory ObsId 25258

description: COMPTON-THICK AGN: THE HUNT CONTINUES
DOI: 10.3535/cvf-del-vgt
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vte-pyn-096
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9vv-48k-9lr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7wc-q4f-6tc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/btz-arf-7pe
title: Sciurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25287
title: Chandra X-ray Observatory ObsId 25287

description: X-RAYING GIANT RADIO GALAXIES
DOI: 10.3535/66k-gz9-c5n
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/93q-am3-0zy
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b9l-qh4-v07
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lr9-bz0-ey0
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/64t-dtd-g9l
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l4r-csn-jjt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25288
title: Chandra X-ray Observatory ObsId 25288

description: Late-time Chandra Observations of eROSITA Selected Tidal Disruption Events
DOI: 10.3535/ksk-ndk-nlv
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zp9-t32-ex0
title: †Wilkingia R. B. Wilson, 1959

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5vw-351-kmc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25370
title: Chandra X-ray Observatory ObsId 25370

description: Revealing obscured quasars at z~6
DOI: 10.3535/2st-02l-ply
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q6v-n3v-ncd
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m6b-x0w-xfh
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ryj-br6-05z
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fnn-lqc-2de
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/frx-850-evn
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25387
title: Chandra X-ray Observatory ObsId 25387

description: X-ray Properties of High-redshift Close Dual Quasars Discovered by Gaia and HST
DOI: 10.3535/kr5-l86-d2b
title: †Habrocythere Triebel, 1940

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m8g-0mq-n8l
title: †Dunbarella Newell, 1938

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sa6-gjp-eh1
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bcq-avx-099
title: †Holaster L. Agassiz, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xea-ht8-prq
title: †Acanthopecten Girty, 1903

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/25693
title: Chandra X-ray Observatory ObsId 25693

description: X-ray Irradiation of the Hot Jupiter Orbiting the T Tauri Star TAP 26
DOI: 10.3535/8mg-rr0-ber
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yrt-tvy-nj9
title: Belemnites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q44-s5k-v7v
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q4n-bd9-l1k
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7en5qg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blackfordia virginica",
 "Country is Romania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035718-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4yw66
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blackfordia virginica",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035719-250811113504898/datasets/export for details.
DOI: 10.15468/dl.bkdkxv
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blackfordia virginica",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035722-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.