cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4244966.v1
title: Comparative analysis of nonvolatile and volatile metabolites in <i>Lichtheimia ramosa</i> cultivated in different growth media

description: <i>Lichtheimia ramosa</i> is one of the predominant filamentous fungi in Korean traditional <i>nuruk</i>. The nonvolatile and volatile metabolites of <i>L. ramosa</i> cultivated in three growth media: complete medium (CM), potato dextrose broth (PDB), and sabouraud dextrose broth (SDB), were investigated and compared. Among nonvolatile metabolites, serine, lysine, and ornithine increased in CM and PDB cultivated with <i>L. ramosa</i> during the exponential phase. In addition, glucose level increased in CM whereas decreased in PDB and SDB. The major volatile metabolites in the extract samples were acetic acid, ethanol, 3-methyl-2-buten-1-ol, 2-phenylethanol, ethylacetate, 2-furaldehyde, 5-(hydroxymethyl)-2-furaldehyde, 2,3-dihydro-3,5,-dihydroxy-6-methyl-4<i>H</i>-pyran-4-one, and <i>α</i>-humulene. In particular, the levels of volatile metabolites related to <i>makgeolli</i> (e.g., acetic acid, ethanol, and ethyl acetate) were highest in extracts cultivated in CM. On the other hand, the level of 2-phenylethanol was relatively higher in PDB and SDB, possibly due to there being more phenylalanine present in the biomass sample in media.
DOI: 10.6084/m9.figshare.4244798
title: BIO205 2016 Tut0102 Census 3 Data.xlsx

description: <br>Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.4244825
title: BIO205 2016 Tut0105 Census 3 Data.xlsx

description: Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.4244825.v1
title: BIO205 2016 Tut0105 Census 3 Data.xlsx

description: Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.4244777
title: Baldi et al._Opportunities drive the global distribution of protected areas.xlsx

description: We describe with histograms the distribution of terrestrial protected areas along physical, human, and biological independent gradients. Linear and non-linear regressions and correlations lead to a general description of sign, shape, and strength of the relationships; a random forest analysis leads to an importance ranking of the variables related to individual preferential motivations and opportunistic forces; and an evenness metric seizes the strength of variables related to individual representative motivations.
DOI: 10.6084/m9.figshare.4244762
title: BIO205 2016 Tut0110 Census 3 Data.xlsx

description: Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.4244744
title: Clinical trial transparency update: an assessment of the disclosure of results of company-sponsored trials associated with new medicines approved in Europe in 2013

description: <b>Background:</b> The objective of this study was to assess the timely disclosure of results of company-sponsored clinical trials related to all new medicines approved by the European Medicines Agency (EMA) during 2013. This is an extension of two previously reported studies of trials related to all new medicines approved in Europe in 2009, 2010 and 2011, and in 2012. The original study found that over a three year period over three-quarters of all trials were disclosed within 12 months and almost 90% were disclosed by the end of the study. The extension study (2012 approvals) showed an improvement in results disclosure within 12 months to 90%, and an overall disclosure rate of 92% by the end of the study. <b>Methods:</b> The methodology used was exactly as previously reported. Various publicly available information sources were searched for both clinical trial registration and disclosure of results. All completed company-sponsored trials related to each new medicine approved for marketing by the EMA in 2013, carried out in patients and recorded on a clinical trials registry and/or included in an EMA European Public Assessment Report (EPAR), were included. Information sources were searched between 1 May and 31 July 2015. <b>Outcome measures and results:</b> The main outcome measure was the proportion of trials for which results had been disclosed on a registry or in the scientific literature either within 12 months of the later of either first regulatory approval or trial completion, or by 31 July 2015 (end of survey). Of the completed trials associated with 34 new medicines licensed to 24 different companies in 2013, results of 90% (484/539) had been disclosed within 12 months, and results of 93% (500/539) had been disclosed by 31 July 2015. <b>Conclusions:</b> The disclosure rate within 12 months of 90% suggests that industry is continuing to achieve disclosure in a timely manner. The overall disclosure rate at study end of 93% indicates that the improvement in transparency amongst company-sponsored trials has been maintained in the trials associated with new medicines approved in 2013.
DOI: 10.6084/m9.figshare.4244762.v1
title: BIO205 2016 Tut0110 Census 3 Data.xlsx

description: Data set collected at University of Toronto Mississauga (UTM) campus, following protocol posted at http://www.campusecology.network/protcol/
DOI: 10.6084/m9.figshare.4244744.v1
title: Clinical trial transparency update: an assessment of the disclosure of results of company-sponsored trials associated with new medicines approved in Europe in 2013

description: <b>Background:</b> The objective of this study was to assess the timely disclosure of results of company-sponsored clinical trials related to all new medicines approved by the European Medicines Agency (EMA) during 2013. This is an extension of two previously reported studies of trials related to all new medicines approved in Europe in 2009, 2010 and 2011, and in 2012. The original study found that over a three year period over three-quarters of all trials were disclosed within 12 months and almost 90% were disclosed by the end of the study. The extension study (2012 approvals) showed an improvement in results disclosure within 12 months to 90%, and an overall disclosure rate of 92% by the end of the study. <b>Methods:</b> The methodology used was exactly as previously reported. Various publicly available information sources were searched for both clinical trial registration and disclosure of results. All completed company-sponsored trials related to each new medicine approved for marketing by the EMA in 2013, carried out in patients and recorded on a clinical trials registry and/or included in an EMA European Public Assessment Report (EPAR), were included. Information sources were searched between 1 May and 31 July 2015. <b>Outcome measures and results:</b> The main outcome measure was the proportion of trials for which results had been disclosed on a registry or in the scientific literature either within 12 months of the later of either first regulatory approval or trial completion, or by 31 July 2015 (end of survey). Of the completed trials associated with 34 new medicines licensed to 24 different companies in 2013, results of 90% (484/539) had been disclosed within 12 months, and results of 93% (500/539) had been disclosed by 31 July 2015. <b>Conclusions:</b> The disclosure rate within 12 months of 90% suggests that industry is continuing to achieve disclosure in a timely manner. The overall disclosure rate at study end of 93% indicates that the improvement in transparency amongst company-sponsored trials has been maintained in the trials associated with new medicines approved in 2013.
DOI: 10.6084/m9.figshare.4244684
title: Viral titre data for 51 species of Drosophilidae infected with three sigma viruses

description: Viral titre, Wolbachia status, distance from natural host, wing size data for three sigma viruses (DAffSV, DMelSV, DObsSV) for 51 species of Drosophilidae
DOI: 10.6084/m9.figshare.4244684.v1
title: Viral titre data for 51 species of Drosophilidae infected with three sigma viruses

description: Viral titre, Wolbachia status, distance from natural host, wing size data for three sigma viruses (DAffSV, DMelSV, DObsSV) for 51 species of Drosophilidae
DOI: 10.21227/bmn5-v737
title: Dataset with cyber attacks in HoneySELK

description: Due to the large number of vulnerabilities in information systems and the continuous activity of attackers, techniques for malicious traffic detection are required to identify and protect against cyber-attacks. Therefore, it is important to intentionally operate a cyber environment to be invaded and compromised in order to allow security professionals to analyze the evolution of the various attacks and exploited vulnerabilities.This dataset includes 2016, 2017 and 2018 cyber attacks in the HoneySELK environment.HoneySELK was developed to control, capture, analyze and visualize new and unknown attacks in real time within the research laboratory of the Electrical Engineering Department of the University of Brasília. - Rodrigues, G.A.P.; Albuquerque, R.d.O.; de Deus, F.E.G.; de Sousa, R.T., Jr.; de Oliveira Júnior, G.A. Cybersecurity and Network Forensics: Analysis of Malicious Traffic towards a Honeynet with Deep Packet Inspection. Appl. Sci. 2017, 7, 1082 (https://www.mdpi.com/2076-3417/7/10/1082).- Oliveira Júnior, G.A.; de Sousa, R.T., Jr.; de Albuquerque, R.O.; Canedo, E.D.; Grégio, A. HoneySELK: Um Ambiente para Pesquisa e Visualização de Ataques Cibernéticos em Tempo Real. In Proceedings of the XVI Simpósio Brasileiro em Segurança da Informação e de Sistemas Computacionais, Niteroi, Rio de Janeiro, Brazil, 7–10 November 2016; pp. 697–706 (http://sbseg2016.ic.uff.br/pt/anais.php and https://repositorio.unb.br/handle/10482/22886).- Oliveira Jr, G. A., Sousa Jr, R. T. de, Tenório, D. F. (2015). Desenvolvimento de um Ambiente Honeynet Virtual para Aplicação Governamental. In: The Ninth International Conference on Forensic Computer Science. v. 1. p. 70-80 (http://www.icofcs.org/2015/papers-published-009.html).
DOI: 10.6084/m9.figshare.4244582
title: File 2: Supporting Data used in Model 1 and Model 2- This supplementary file includes all data used in the analyses. Variable names are prefixed by the specific model they were included in (e.g., "model 1) from Life history theory and climate change: resolving population and parental investment paradoxes

description: Population growth in the next half-century is on pace to raise global carbon emissions by half. Carbon emissions are associated with fertility as a by-product of somatic and parental investment, which is predicted to involve time orientation/preference as a mediating psychological mechanism. Here, we draw upon life-history theory (LHT) to investigate associations between future orientation and fertility, and their impacts on carbon emissions. We argue ‘<i>K</i>-strategy’ life history (LH) in high-income countries has resulted in parental investment behaviours involving future orientation that, paradoxically, promote unsustainable carbon emissions, thereby lowering the Earth's <i>K</i> or carrying capacity. Increasing the rate of approach towards this capacity are ‘<i>r</i>-strategy’ LHs in low-income countries that promote population growth. We explore interactions between future orientation and development that might slow the rate of approach towards global <i>K</i>. Examination of 67 000 individuals across 75 countries suggests that future orientation interacts with the relationship between environmental risk and fertility and with development related parental investment, particularly investment in higher education, to slow population growth and mitigate <i>per capita</i> carbon emissions. Results emphasize that LHT will be an important tool in understanding the demographic and consumption patterns that drive anthropogenic climate change.
DOI: 10.6084/m9.figshare.4244582.v1
title: File 2: Supporting Data used in Model 1 and Model 2- This supplementary file includes all data used in the analyses. Variable names are prefixed by the specific model they were included in (e.g., "model 1) from Life history theory and climate change: resolving population and parental investment paradoxes

description: Population growth in the next half-century is on pace to raise global carbon emissions by half. Carbon emissions are associated with fertility as a by-product of somatic and parental investment, which is predicted to involve time orientation/preference as a mediating psychological mechanism. Here, we draw upon life-history theory (LHT) to investigate associations between future orientation and fertility, and their impacts on carbon emissions. We argue ‘<i>K</i>-strategy’ life history (LH) in high-income countries has resulted in parental investment behaviours involving future orientation that, paradoxically, promote unsustainable carbon emissions, thereby lowering the Earth's <i>K</i> or carrying capacity. Increasing the rate of approach towards this capacity are ‘<i>r</i>-strategy’ LHs in low-income countries that promote population growth. We explore interactions between future orientation and development that might slow the rate of approach towards global <i>K</i>. Examination of 67 000 individuals across 75 countries suggests that future orientation interacts with the relationship between environmental risk and fertility and with development related parental investment, particularly investment in higher education, to slow population growth and mitigate <i>per capita</i> carbon emissions. Results emphasize that LHT will be an important tool in understanding the demographic and consumption patterns that drive anthropogenic climate change.
DOI: 10.6084/m9.figshare.4244561
title: Forest fraction in an ensemble of the climate model FAMOUS

description: Data for “The impact of structural error on parameter constraint in a climate model” by Doug McNeall, Jonny Williams, Ben Booth, Richard Betts, Peter Challenor, Andy Wiltshire, and David Sexton. Published in Earth System Dynamics, 2016contact dougmcneall@gmail.com<br>The R data file “famous_forest_fraction.RData” contains a number of R objects:<br>full_frac Data frame containing 100 ensemble members of FAMOUS. Unique model run ID, input parameters and aggregated forest fractionbl.frac.ens Global broadleaf tree grid box forest fraction, rows match the rows of full_frac, columns are lats x longs of the model grid (by lats)nl.frac.ens Global needleleaf tree grid box forest fraction, rows match the rows of full_frac, columns are lats x longs of the model grid (by lats)lats Latitudes for FAMOUS model gridlongs Longitudes for FAMOUS model gridobs Aggregated “Observations” of forest fractionX.standard Standard or default parameters for FAMOUS land surface<br><br>Useful functions:<br>remap.famous = function(dat,longs,lats, shift = FALSE){ # reshape a map in vector form so that fields() package function image.plot() # (for example) will plot it correctly mat = matrix(dat, nrow=length(longs), ncol=length(lats))[ ,length(lats):1] if(shift){ block1.ix = which(longs &lt; shift) block2.ix = which(longs &gt; shift) mat.shift = rbind(mat[ block2.ix, ], mat[block1.ix, ]) out = mat.shift } else{ out = mat } out}
DOI: 10.6084/m9.figshare.4244561.v1
title: Forest fraction in an ensemble of the climate model FAMOUS

description: Data for “The impact of structural error on parameter constraint in a climate model” by Doug McNeall, Jonny Williams, Ben Booth, Richard Betts, Peter Challenor, Andy Wiltshire, and David Sexton. Published in Earth System Dynamics, 2016contact dougmcneall@gmail.com<br>The R data file “famous_forest_fraction.RData” contains a number of R objects:<br>full_frac Data frame containing 100 ensemble members of FAMOUS. Unique model run ID, input parameters and aggregated forest fractionbl.frac.ens Global broadleaf tree grid box forest fraction, rows match the rows of full_frac, columns are lats x longs of the model grid (by lats)nl.frac.ens Global needleleaf tree grid box forest fraction, rows match the rows of full_frac, columns are lats x longs of the model grid (by lats)lats Latitudes for FAMOUS model gridlongs Longitudes for FAMOUS model gridobs Aggregated “Observations” of forest fractionX.standard Standard or default parameters for FAMOUS land surface<br><br>Useful functions:<br>remap.famous = function(dat,longs,lats, shift = FALSE){ # reshape a map in vector form so that fields() package function image.plot() # (for example) will plot it correctly mat = matrix(dat, nrow=length(longs), ncol=length(lats))[ ,length(lats):1] if(shift){ block1.ix = which(longs &lt; shift) block2.ix = which(longs &gt; shift) mat.shift = rbind(mat[ block2.ix, ], mat[block1.ix, ]) out = mat.shift } else{ out = mat } out}
DOI: 10.6084/m9.figshare.4244513
title: [dataset] Accessibility and Update status of published software: Benefits and missed opportunities

description: The two tables contain data of software packages published in <i>Molecular Ecology Resource </i>(MER) from 2001 to 2015, and in <i>BMC Bioinformatics</i> (2004). These data sets are part of an analysis under the title stated above.
DOI: 10.6084/m9.figshare.4244501
title: raw reads paleo

description: Illumina raw reads to Ecoli paleo spacers MS<br>
DOI: 10.6084/m9.figshare.4244498
title: Dataset -Ohrnberger et al. 2016.xlsx

description: Dataset used in Ohrnberger et al. 2016
DOI: 10.6084/m9.figshare.4244498.v1
title: Dataset -Ohrnberger et al. 2016.xlsx

description: Dataset used in Ohrnberger et al. 2016
DOI: 10.6084/m9.figshare.4244477
title: Characterization of the collected Brucella abortus strains including MLVA-16

description: <em> </em>Data on MLVA genotyping of 94 strains of <i>Brucella abortus</i> found in Kazakhstan.
DOI: 10.6084/m9.figshare.4244474
title: Molecular hydrogen alleviates motor deficits and muscle degeneration in <i>mdx</i> mice

description: <b>Objective</b>: Duchenne muscular dystrophy (DMD) is a devastating muscle disease caused by a mutation in DMD encoding dystrophin. Oxidative stress accounts for dystrophic muscle pathologies in DMD. We examined the effects of molecular hydrogen in <i>mdx</i> mice, a model animal for DMD. <b>Methods</b>: The pregnant mother started to take supersaturated hydrogen water (&gt;5 ppm) <i>ad libitum</i> from E15.5 up to weaning of the offspring. The <i>mdx</i> mice took supersaturated hydrogen water from weaning until age 10 or 24 weeks when they were sacrificed. <b>Results</b>: Hydrogen water prevented abnormal body mass gain that is commonly observed in <i>mdx</i> mice. Hydrogen improved the spontaneous running distance that was estimated by a counter-equipped running-wheel, and extended the duration on the rota-rod. Plasma creatine kinase activities were decreased by hydrogen at ages 10 and 24 weeks. Hydrogen also decreased the number of central nuclei of muscle fibers at ages 10 and 24 weeks, and immunostaining for nitrotyrosine in gastrocnemius muscle at age 24 weeks. Additionally, hydrogen tended to increase protein expressions of antioxidant glutathione peroxidase 1, as well as anti-apoptotic Bcl-2, in skeletal muscle at age 10 weeks. <b>Discussion</b>: Although molecular mechanisms of the diverse effects of hydrogen remain to be elucidated, hydrogen potentially improves muscular dystrophy in DMD patients.
DOI: 10.6084/m9.figshare.4244477.v1
title: Characterization of the collected Brucella abortus strains including MLVA-16

description: <em> </em>Data on MLVA genotyping of 94 strains of <i>Brucella abortus</i> found in Kazakhstan.
DOI: 10.6084/m9.figshare.4244474.v1
title: Molecular hydrogen alleviates motor deficits and muscle degeneration in <i>mdx</i> mice

description: <b>Objective</b>: Duchenne muscular dystrophy (DMD) is a devastating muscle disease caused by a mutation in DMD encoding dystrophin. Oxidative stress accounts for dystrophic muscle pathologies in DMD. We examined the effects of molecular hydrogen in <i>mdx</i> mice, a model animal for DMD. <b>Methods</b>: The pregnant mother started to take supersaturated hydrogen water (&gt;5 ppm) <i>ad libitum</i> from E15.5 up to weaning of the offspring. The <i>mdx</i> mice took supersaturated hydrogen water from weaning until age 10 or 24 weeks when they were sacrificed. <b>Results</b>: Hydrogen water prevented abnormal body mass gain that is commonly observed in <i>mdx</i> mice. Hydrogen improved the spontaneous running distance that was estimated by a counter-equipped running-wheel, and extended the duration on the rota-rod. Plasma creatine kinase activities were decreased by hydrogen at ages 10 and 24 weeks. Hydrogen also decreased the number of central nuclei of muscle fibers at ages 10 and 24 weeks, and immunostaining for nitrotyrosine in gastrocnemius muscle at age 24 weeks. Additionally, hydrogen tended to increase protein expressions of antioxidant glutathione peroxidase 1, as well as anti-apoptotic Bcl-2, in skeletal muscle at age 10 weeks. <b>Discussion</b>: Although molecular mechanisms of the diverse effects of hydrogen remain to be elucidated, hydrogen potentially improves muscular dystrophy in DMD patients.
DOI: 10.6084/m9.figshare.4244459
title: Habitat diversity and multifunctionality

description: Calculated habitat diversity (as a continues variable) and categorical variable. Ecosystem functions; GPP, DIN uptake, Denitrification and N2fixation. Bacterial diversity and microalgal diversity.
DOI: 10.6084/m9.figshare.4244459.v1
title: Habitat diversity and multifunctionality

description: Calculated habitat diversity (as a continues variable) and categorical variable. Ecosystem functions; GPP, DIN uptake, Denitrification and N2fixation. Bacterial diversity and microalgal diversity.
DOI: 10.6084/m9.figshare.4244456
title: Dataset: statokinesigrams of fallers and non fallers elderly

description: 168 statokinesigrams from 24 fall prone and 60 non fall prone individuals, all &gt;65 years old. Each individual has 2 statokinesigrams, one with open eyes and one with close eyes (romberg test protocol). This dataset is linked with the paper :<br><br>"A non linear scoring approach for evaluating balance:<br>classification of elderly as fallers and non-fallers"<br><br>Julien Audiffren, Ioannis Bargiotas, Nicolas Vayatis,Pierre Paul Vidal, Damien Ricard<br><br>Plos One 2016 [To appear]<br><br><br>
DOI: 10.6084/m9.figshare.4244405
title: Supplemental Data Files for "Turbulence links momentum and solute exchange in coarse-grained streambeds"

description: These files contain data associated with the <i>Water Resources Research </i>article, “Turbulence Links Momentum and Solute Exchange in Coarse‐Grained Streambeds.” The article can be accessed at doi:10.1029/2017WR021992.
DOI: 10.6084/m9.figshare.4244405.v1
title: Supplemental Data Files for "Turbulence links momentum and solute exchange in coarse-grained streambeds"

description: These files contain data associated with the <i>Water Resources Research </i>article, “Turbulence Links Momentum and Solute Exchange in Coarse‐Grained Streambeds.” The article can be accessed at doi:10.1029/2017WR021992.
DOI: 10.6084/m9.figshare.4244387
title: BD and weather data

description: Longitudinal mood, sleep, and activity data from a small sample of patients with BD - matched by date to meteorological data from the Bureau of Meteorology.<br>
DOI: 10.6084/m9.figshare.4244387.v1
title: BD and weather data

description: Longitudinal mood, sleep, and activity data from a small sample of patients with BD - matched by date to meteorological data from the Bureau of Meteorology.<br>
DOI: 10.6084/m9.figshare.4244273.v1
title: OTACS Software

description: OTACS (Open Thermal Action Coding System) is a software we offer that takes advantage of our algorithms to measure various physiological variables using thermal imaging. Some of these are perinasal perspiration measurement and breathing rate measurement.
DOI: 10.6084/m9.figshare.4244267
title: Appendix C large tables

description: This excel workbook contains tables C12, C13 and C21. These were too large to fit in my thesis document and so are provided here instead.<br><br>