cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/n5t13-g1a12
title: Pdb 110408 696

description: Prosthecobacter debontii, 08nov15a_b696_No1_010, unique microtubule-like structure,
description: <strong>Tilt Series Date:</strong> 2008-11-15</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2008-11-15-10_slicer8125.jpg: Unknown supercoil? Comb filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-11-15-10/rawdata/</p>08nov15a_b696_No1_010.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov15a_b696_No1_010.rec,  Reconstruction (Pixel Size 1.9 nm), 342.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ma48q5
title: Occurrence Download

description: A dataset containing 23436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Lonicera involucrata"
 ]
}

 The dataset includes 23436 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047812-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/y09e5-cn498
title: Hyphomonas session6 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division, potential granule
description: <strong>Tilt Series Date:</strong> 2008-12-09</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-92/rawdata/</p>08dec09a_unk1c_098.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-92/rawdata/08dec09a_unk1c_098.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec09a_unk1c_098_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 113.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2q6535
title: Occurrence Download

description: A dataset containing 564 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen)",
 "OccurrenceStatus is Present",
 "TaxonKey is Strabomantis bufoniformis"
 ]
}

 The dataset includes 564 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047817-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/3zb1t-yp047
title: Hyphomonas session4 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-69/rawdata/</p>08nov01a_b17x1_069.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-69/rawdata/08nov01a_b17x1_069.mrc"
        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_069_1k.rec,  Reconstruction (Pixel Size 1.26 nm), 112.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wtgja-4ez70
title: MreB-GFP o/e A22 treatment 2 hrs

description: Raw data files of MreB-GFP o/e A22 treatment 2 hrs
description: <strong>Tilt Series Date:</strong> 2007-04-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 207.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strains constructed by Maria Sandkvist (U. Michigan).  Sample prepared by Zhuo Li.  Data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> A22 treatment and IPTG induction were done at the same time for two hours.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2007-04-21-9/3dimage_811/</p>vcmga224210765w1dot5d9300cts18k12u001bin_full.rec,  Reconstruction (Pixel Size 2.518 nm), 692.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        vcmga224210765w1dot5d9300cts18k12u001.mrc,  Tilt Series (Pixel Size 1.259 nm), 738.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/gtvws-t1z91
title: Pdb 110408 696

description: Prosthecobacter debontii, 08nov15a_b696_No1_034,
description: <strong>Tilt Series Date:</strong> 2008-11-15</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-11-15-30/rawdata/</p>08nov15a_b696_No1_034.mrc,  Tilt Series (Pixel Size 0.95 nm), 989.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov15a_b696_No1_034_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.jamq7v
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is Strabomantis anomalus"
 ]
}

 The dataset includes 360 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047818-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/g8jxw-khz09
title: Eco 120208 150

description: Escherichia coli, 08dec14a_ec_014,
description: <strong>Tilt Series Date:</strong> 2008-12-14</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 7.1.2 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-12/rawdata/</p>08dec14a_ec_014.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-12/rawdata/08dec14a_ec_014.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec14a_ec_014_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-12/3dimage_13294/08dec14a_ec_014_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5tttr-ank24
title: Hyphomonas session4 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-49/rawdata/</p>08nov01a_b17x1_049.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-49/rawdata/08nov01a_b17x1_049.mrc"
        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_049_1k.rec,  Reconstruction (Pixel Size 1.26 nm), 148.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0dcw6-xss66
title: Ostreococcus tauri

description: Ostreococcus tauri, nitrogen
description: <strong>Tilt Series Date:</strong> 2006-04-25</p>
<strong>Data Taken By:</strong> Gregory Henderson</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 165.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> prepared by Gregory Henderson and Lu Gan; cells provided by Herv� Moreau</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in f/2 medium</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ghp2006-04-25-1/rawdata/</p>18k250e12df56rg2dgSA_1.mrc,  Tilt Series (Pixel Size 1.2 nm), 486.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        OT_bin2.mrc,  Reconstruction (Pixel Size 2.4 nm), 128.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/chbec-pgt12
title: Hyphomonas session5 27KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-18</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-18-28/rawdata/</p>08nov18a_b620_1_033.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov18a_b620_1_033_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 311.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.25345/c51v5bs6p
title: MassIVE MSV000098942 - Wu iPSC-CM immature vs MM11 vs adult CMs label-free proteomics
title: Label-free proteomics from iPSC-CMs (immature and MM11-treated) vs adult cardiomyocytes.
DOI: 10.22002/cr5kz-6s764
title: Eco 120208 150

description: Escherichia coli, 08dec14a_ec_035,
description: <strong>Tilt Series Date:</strong> 2008-12-14</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 7.1.2 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-28/rawdata/</p>08dec14a_ec_035.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08dec14a_ec_035_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hhke2-cq808
title: Hyphomonas session3 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-08-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-31-16/rawdata/</p>08aug31a_a1_059.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08aug31a_a1_059_1k.rec,  Reconstruction (Pixel Size 1.02 nm), 185.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y0w4s-rzs57
title: Cell with interesting strucures

description: Dying cell of A.longum, vegetative cell
description: <strong>Tilt Series Date:</strong> 2008-02-05</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1I°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Anaerobic, on CO2, 1 month old</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-02-05-4/rawdata/</p>tergetcell1.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-02-05-4/rawdata/tergetcell1.mrc"
        > <i class="download icon"></i> Download </a></p>

        tergetcell1_full.rec,  Reconstruction (Pixel Size 1.922 nm), 369.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2008-02-05-4/3dimage_1430/tergetcell1_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/esncr-nvn24
title: Hyphomonas session2 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-08-29</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
  jsa2008-08-29-9_slicer12885.jpg: Stalk
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-29-9/rawdata/</p>08aug29b_a1_009.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        08aug29b_a1_009_1k.rec,  Reconstruction (Pixel Size 1.264 nm), 149.1 MB  
        
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