cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/w5rpxwf99g.2
title: Stable water isotope monitoring network of different water bodies in Shiyang River Basin, a typical arid river in China (Supplemental Edition)

description: Data set of isotopes of different water bodies (precipitation, surface water, groundwater,soil water, and plant water) in the Shiyang River Basin from 2015 to 2019. A total of 52 monitoring points were set up in the Shiyang River Basin , among which 35 were upstream, 6 in the midstream, and 11 in the downstream. 6,760 samples have been obtained, including 1,210 precipitation samples (P1-P12), 1,101 surface water samples (S1-S35), 161 groundwater samples (G1-G17), 3,779 soil water samples (S1-S18), and 509 plant water samples (P1-P12).
DOI: 10.17632/3kpn7w49xv.2
title: BMCRN_DN_TJ-Datafile9

description: Size distribution of total RNA. The size distribution of total RNA was analysed using Agilent TapeStation.
DOI: 10.17632/46x6vx5r4z.2
title: BMCRN_DN_TJ-Datafile8

description: Size distribution of total RNA. Total RNA was extracted from the FFPE specimens by a guanidinium thiocyanate/acid phenol-chloroform extraction method using RNAiso-Plus (Takara Bio, Kusatsu, Japan). RNA concentrations and OD260/OD280 ratios were measured using a NanoDrop 1000 spectrophotometer (Thermo Fisher Scientific).
DOI: 10.17632/j7bd8nc6xy.1
title: An Early Survey on the COVID-19 Vaccine Acceptance by Urban and Rural Inhabitants in the Red River Delta, Vietnam

description: The COVID-19 vaccinations are used as an optimal measure to contain and effectively end the pandemic in the long run. It is a fact that vaccination rates in many developing and underdeveloped countries worldwide remain very low. While it takes a long time to achieve herd immunity and the vaccination rate is closely connected with the acceptance rate, understanding people’s intent on getting vaccines for COVID-19 remains limited. This study aims to improve the understanding of residents’ perceptions of COVID-19 vaccines and willingness to participate in vaccination programs in the Red River Delta, Vietnam’s most densely populated area, thus being widely regarded as a potential disease epicenter. In March 2021, an online survey was randomly conducted in 10 provinces, including Bac Ninh, Ha Nam, Ha Noi, Hai Duong, Hai Phong, Hung Yen, Nam Dinh, Ninh Binh, Thai Binh, Vinh Phuc. A total of 1116 adults representing 1116 households in different provinces voluntarily joined this investigation. This article offers a unique and useful dataset on four main components: (1) residents’ perceptions of the COVID-19 pandemic; (2) their understanding of the COVID-19 vaccine; (3) their willingness to opt for the COVID-19 vaccine; and (4) respondents’ demographic information. The initial findings and dataset of the study contribute to keeping policymakers, governments, and vaccine companies informed of well-founded figures for people’s willingness to participate in the COVD-19 vaccination, which helps devise desirable vaccination policies to conquer the COVID-19 pandemic successfully.
DOI: 10.17632/rzg7tvkg2r.2
title: BMCRN_DN_TJ-Datafile10

description: Box plots of the signals from the microarray. The Affymetrix Clariom D Assay (Thermo Fisher Scientific), a next-generation microarray, was used for genome-wide transcriptome analysis. Labelled targets were prepared from RNA samples using the reagents and enzymes supplied in the GeneChip® WT Pico Reagent Kit (Thermo Fisher Scientific) according to the manufacturer’s instruction with slight modifications. Total RNA (100 ng) from each sample was reverse-transcribed using T7 promoter-tagged oligo-dT primer and WT Pico First-Strand Enzyme. After the removal of excess primers, 3’ Adapter was added to the first-strand cDNA using WT Pico 3’ Adaptor Enzyme. The 3’ Adapter-tagged 1st strand cDNA was then subjected to polymerase chain reaction using WT Pico PCR Enzyme (Taq DNA polymerase) and adaptor-specific primers to synthesize T7 promoter-tagged double-stranded cDNA. The cDNA was subjected to in vitro transcription using WT Pico IVT Enzyme (T7 RNA polymerase) to synthesize complementary RNA. The complementary RNA was purified using Purification Beads supplied in the kit, and reverse-transcribed using random primers and WT Pico 2nd-Cycle ss-cDNA Enzyme to synthesize 2nd-cycle single-stranded cDNA. After hydrolysis of the template RNA using RNase H, the sense-strand cDNA (5.5 μg) was purified to remove RNase H, salts, and unincorporated dNTPs, then digested with uracil-DNA glycosidase into 40–70 nt fragments. Successful fragmentation was confirmed using an Agilent 2100 Bioanalyzer. The fragmented cDNA was then biotin-labeled with terminal deoxynucleotidyl transferase and subjected to hybridization according to the GeneChip® WT Pico Reagent Kit manual. The Clariom D array was processed through the automatic washing step using a GeneChip® Hybridization, Wash, and Stain Kit (Thermo Fisher Scientific) and Fluidics Station 450 (Thermo Fisher Scientific). Hybridised targets were stained with kit-provided streptavidin-phycoerythrin and detected using a Scanner 3000 7G (Thermo Fisher Scientific). Raw data (CEL files) were produced using Affymetrix GeneChip Command Console Software and processed using Affymetrix Expression Console Software. The CEL files were registered under Gene Expression Omnibus (GEO) accession no. GSE169393. A detection call algorithm was used to filter and remove missing expression values based on absent/present calls. Using this algorithm, present, marginal, or absent calls were obtained for each probe set in each array. A scaling factor was applied to the normalised data from the CEL files to bring the average intensity for all probes on the array to 500, generating CHP files for use in Microarray Suite 5. For gene expression comparisons, data assigned to absent calls were omitted.
DOI: 10.17632/b94xgzxsdm.1
title: Rapidly developable low cost and power efficient portable turbine-based emergency ventilator

description: Use of ventilators has always been common in medical scenarios but very expensive to procure or develop; mainly because of expensive components precise instrumentation. Our paper attempts to mitigate that problem by proposing a novel way to rapidly develop a low cost and power efficient portable turbine-based emergency ventilator that uses 3D printing technology and off-the-shelf components. This turbine and valve-based ventilator features most commonly used modes. A unique servo-based pressure release mechanism has been designed that makes the system around 36 times more efficient than solenoid-based systems. Reliability and efficiency have been increased further through the absence of electromechanical component in our novel positive end expiratory pressure (PEEP) valve. Effective algorithms such as feed-forward and PID are used alongside our unique ‘Sensor data filtration Methodology’. It provides an interactive GUI through an app that can be installed on any readily found tablets while the firmware manages the breathing detection algorithm using flow sensor. This modular, portable, energy-efficient and low-noise system ventilator also features swappable battery that can run for 5.6 hours at a stretch and also holds the ability to even run-on solar power. Design files description: 1. 'Assembly 3D Model Files' folder containing 3D models' files for viewing and generating 3D printing files 2. 'Electronics' folder for getting the modular integration instructions 3. 'Firmware' folder for all the necessary codes to be uploaded into the microcontroller 4. 'Project Gallery' folder for system architectures and block diagrams 5. 'Android Application' zipped folder for the Android app development files 6. 'Design Files and BOM.xlsx' spreadsheet file containing details regarding design files and bill of materials including sources. 7. 'LICENSE' containing our license for the Open-Source. 8. 'Project Description and Build Instructions.pdf' containing detailed project description and steps to reproduce the system.
DOI: 10.17632/c8h2f2prch.1
title: Cues from mRNA splicing prevent default Argonaute silencing in C. elegans

description: Sanger sequencing data for CRISPR generated strains used in the "Cues from mRNA splicing prevent default Argonaute silencing in C. elegans" manuscript.
DOI: 10.17632/44g4dyjgby.1
title: The degradation mechanism of 304, 310S, 316L and 321 stainless steels in E-scrap smelting slag

description: Original chemical composition of the starting materials. Obtained SEM pictures and EDS results.
DOI: 10.17632/dm2gp8yyg8.1
title: Tsai et al_Cell Reports_2021

description: Data related to Tsai et al., "Cerebral capillary blood flow upsurge during REM sleep is mediated by A2a receptors" published in Cell Reports, 2021.
DOI: 10.17632/jv8h4z8xht.1
title: Survey Dataset of Socioeconomic Status and the Asset Ownership of Fishing Communities in Terengganu, Malaysia

description: The reported datasets include demographic characteristics of the respondents, fishing zone, vessel type, fishing operations and roles, household income and asset ownership by the respondents. The datasets are described in the Data In Brief article "Survey Dataset of Socioeconomic Status and the Asset Ownership of Fishing Communities in Terengganu, Malaysia" (2021).
DOI: 10.17632/znb42mw6fy.3
title: Distribution of imposter syndrome (IS) among medical students of Bangladesh: A cross-sectional study

description: Imposter syndrome (IS), suffering from self-doubt and fear, despite clear accomplishment and competencies, is often detected in medical students and adversely affects the student's well-being. This study aimed at assessing the prevalence of IS among public and private This was a descriptive cross-sectional study involving public and private medical colleges in Bangladesh in all years of study, from first through to fifth-year students. The snowball sampling technique was used to obtain the necessary data. Between February to July 2020, a survey collected demographic data and included Dr. Young's eight-question assessment for IS. Out of the 500 participants, 233 (46.6%) were public medical college students, and 267 (53.4%) were private. Among those, 161 (32.2%) had IS, while the remaining 339 (67.8%) did not have IS. Furthermore, 269 (53.8%) of the 500 respondents were male, while 231 (46.2%) were female. We found that respondents attending public medical colleges were 1.21 times more likely to have IS than private medical colleges. Overall, respondents aged 22 to 25 were 3.6% (RR:1.036, CI:0.801-1.339) more likely to be suffering from IS than their younger counterparts. Third- and fourth-year medical students, in particular, require more care than others; teachers and authorities should provide them with proper guidance and supervision, encourage them, and thus grow their self-reliance and confidence.
DOI: 10.17632/bx4tbkkjpv.1
title: Developing Effective Future Educational leaders: Stressing the Need for Futures Thinking Tools

description: Futures thinking is a method of developing the capacity of school and system leaders in education to function as future thinkers. We need to include education leaders in discussions about global and local trends and provide them the opportunity to debate what their desired futures might look like in response to the current societal trends. The goal is to use scenario analysis and futures thinking to help establish a group of future literate education leaders who will discuss and influence policy formulation as well as further develop performance and development practises and cultures. Strand one of a new PhD research study Future Schooling and Futures Thinking: Emerging Forms of Learning Educational and Schools’ Leaders Perspectives makes this clear and has provided many unexpected results from the data collected. The researcher aimed to understand how the system and school leaders would respond to scenarios of future schooling the scenarios as constructed in the OCED Schooling for Tomorrow scenarios, the HolonIQ five scenarios for the Future of Learning and Talent, and the Sanborn et al. Future of Education: Four Scenarios.
DOI: 10.17632/ht4shd47tn.1
title: Vol. 14(2), 2021

description: The English extended abstracts of articles published in Vol. 14(2), 2021, journal of Environmental Stresses in Crop Sciences. to visit the journal, go https://escs.birjand.ac.ir/?lang=en
DOI: 10.17632/z48znmzfn8.3
title: The dataset of "Stable mercury isotopes revealing photochemical processes in the marine boundary layer"

description: All TSP samples were collected during 2016-2017. The Hg content and five Hg isotope ratios in each sample were respectively determined using a CVAFS detector and an MC-ICP-MS in 2018. The OC/EC content in each sample was determined using a multiwavelength carbon analyzer in 2019. The eight heavy metal contents in each sample were determined using an ICP-MS in 2019.
DOI: 10.17632/b37bbk6vyj.1
title: Anti-tax Avoidance, Spillover Effect and International Tax Competition Data

description: In this paper, we add three kinds of anti-tax avoidance methods in ZMW tax competition model, namely “transfer pricing rules of neighboring countries”, “transfer pricing rule of domestic country” and “number of domestic tax treaties” to investigate the spillover effect of anti-tax avoidance system on enterprise income tax base and tax rate. We use the balanced panel data of 50 countries from 2000 to 2013 and system GMM method to test the theoretical propositions.We find that “transfer pricing rules of neighboring countries” and "number of domestic tax treaties" reduce the domestic tax base, but "domestic transfer pricing rule" have no significant effect on the tax base.The three kinds of anti-tax avoidance methods do not eliminate international tax competition behavior.With the improvement of anti-avoidance management the level of tax competition among countries will increase significantly, especially among developed countries.
DOI: 10.17632/dkkshypty3.1
title: Diet and Nutritional Behaviors in Patients With Psoriasis: A Cross-Sectional Study - Supplemental Methods

description: Supplemental Material
DOI: 10.17632/gjdd5r4ywf.1
title: sea spray aerosol number size distribution study

description: This dataset reports the results of in situ measurements of aerosol hygroscopic kappa probability density function, aerosol chemical composition, aerosol number size distribution from 2010 to 2014 at Mace Head Research Station(53.33° N, 9.90 °W; 21m a.m.s.l; 300m from the waterline).
DOI: 10.17632/38zfzr4z3w.2
title: Curated open-access fungi occurrence data for Australia

description: This dataset contains occurrence data for Fungi in the continent of Australia. Human observation and preserved specimen data are collected across six open-access repositories of biological records, and then subjected to a curation process removing erroneous or problematic entries and adding extra nomenclatural, taxonomic, and functional information. The R script for this curation process is also archived, and detailed description of the method and an exploratory overview of the dataset are provided in the accompanying manuscript: doi.org/10.1016/j.funeco.2021.101097 We thank the Atlas of Living Australia, the Global Biodiversity Information Facility, MycoPortal, iNaturalist, and Fungimap Inc. for making data available and all the collectors and observers who created the data we analysed.
DOI: 10.17632/jxggzrdwpd.1
title: Does Roundup affect zinc functions in a bivalve mollusk in ex vivo exposure?

description: Abstract Roundup (Rn), a glyphosate-based formulation, is one of the most frequently used herbicides in the world. It was found to affect non-targeted organisms in several ways including adhesive activity towards metal ions. Zinc (Zn) plays a crucial role in a number of biochemical processes. The aim of this study was to elucidate the direct impact of Rn on the Zn accumulation and Zn- dependent activities in the ex vivo system. Samples of the digestive gland of a bivalve mollusk Unio tumidus were exposed to 3 µM of Rn, Zn, Zn chelator N,N,N′,N′-Tetrakis(2- pyridylmethyl)ethylenediamine) (TPEN, Tp) and their combinations ZnTp and ZnRn for 17 h. The levels of Zn in the tissue (Zn t) and metallothioneins (Zn-MT), metallothioneins (MTSH) and glutathione (GSH & GSSG), total antioxidant capacity (TAC), lysosomal membrane integrity and caspase-3 activity were determined. Here we demonstrate that the Rn and Tp have different effects on the Zn accumulation and functionality. Rn did not affect the accumulation of Zn (Zn t, Zn-MT) in the Zn- and ZnRn-groups. In contrary, Tp produced effects antagonistic to Zn on caspase-3 activity, lysosomal stability and MTSH concentration. Rn caused particular pro-oxidative effect decreasing GSH level (Rn- and ZnRn-groups) and lysosomal stability (Rn- group). The shared affected index was the GSH/GSSG ratio, which decreased by 2-8 times in each exposure. This is the first experience with the Tp application to indicate Zn activity in mollusks. To summarize, the ex vivo approach can be useful in the study of numeral aquatic pollutants.
DOI: 10.6084/m9.figshare.13286906
title: Subclinical mastitis lipidomics

description: We demonstrated that sub-clinical intramammary infection (<b>IMI</b>) with non-aureus staphylococci (<b>NAS</b>) induces changes in the milk lipidome. By applying an untargeted approach, we observed that the abundance of 597 lipids is modified over ten fold due to NAS IMI. Our results contribute to the understanding of inflammatory processes in the bovine udder, highlighting potential novel biomarkers for improving mastitis diagnosis
DOI: 10.17632/8b3pvhz697.2
title: Data for: Experimental Study on Convection Heat Transfer Enhancement of Channel-Flow with Piezoelectric Fan

description: This data set includes raw data used in the journal paper: Experimental Study on Convection Heat Transfer Enhancement of Channel-Flow with Piezoelectric Fan.
DOI: 10.17632/w9yt279rj5.1
title: Prior nights' sleep and gait

description: Prior nights' sleep and gait data
DOI: 10.17632/tmv3hgdvwg.1
title: Data set Village financial system

description: Data set fo Village financial system
DOI: 10.17632/xx52dyv8t4.1
title: ITGA5 FN binding site mutated EPC, mesoscope

description: ITGA5 FN binding site mutated EPC (rhodamine) in NOD SCID peritubular capillaries (lectin), visualized with live cell microscopy (mesoscope).
DOI: 10.17632/hvfwvhgv57.1
title: ITGA5 FN binding site mutated EPC, mesoscope

description: ITGA5 FN binding site mutated EPC (rhodamine) in NOD SCID peritubular capillaries (lectin), visualized with live cell microscopy (mesoscope).
DOI: 10.17632/v7xnx2z45g.4
title: Mir218 nt5 mutated EPC, mesoscope

description: Mir218 nt5 mutated EPC (rhodamine) in NOD SCID peritubular capillaries (lectin), visualized with live cell microscopy (mesoscope).
DOI: 10.5525/gla.researchdata.1094
title: Sugar feeding protects against arboviral infection by enhancing gut immunity in the mosquito vector Aedes aegypti
DOI: 10.34740/kaggle/dsv/2511937
title: COVID Vaccination in World (updated daily)
DOI: 10.5063/hq3xb4
title: Gender differences in traditional knowledge of useful plants in a Brazilian community

description: This dataset contains all the data used in the paper "Gender differences in traditional knowledge of useful plants in a Brazilian community" published in the journal PlosOne. This dataset was used to test if gender is associated with the diversity, transmission, and structure of traditional ecological knowledge of useful plants, in a Brazilian suburban community (Ouro Preto, Minas Gerais, Brazil). The data contains information from 33 women and 33 men with respect to the repertory of plant species and the category of use they recognize. To use this dataset in further studies, you should contact Dr. Maria Cristina Messias (cristina@ufop.edu.br).
DOI: 10.6084/m9.figshare.15134856.v1
title: 438945_workflow_diff_25-filtered_noncoding_gene_different_analysis_file.csv

description: Analysis of lncRNAs chip expression profile in cancer and adjacent tissues of 3 patients with lung cancer
DOI: 10.6084/m9.figshare.15134856
title: 438945_workflow_diff_25-filtered_noncoding_gene_different_analysis_file.csv

description: Analysis of lncRNAs chip expression profile in cancer and adjacent tissues of 3 patients with lung cancer
DOI: 10.6084/m9.figshare.14654886
title: Dataset for "Limits and potential of combined folding and docking using PconsDock"

description: All scripts for predictions and analysis are available from https://github.com/ElofssonLab/bioinfo-toolbox/trRosetta/Details for each run are available from https://github.com/ElofssonLab/bioinfo-toolbox/benchmark5/benchmark4.3/.All models joined alignments, and evaluation results are available from a figshare repository[44].<br>The data is organized as follows<br>1) One diretora (N*/ as well as ./) contains all the results and data for one set of parameters2) In each directory the following subdirectories are included2a) seq/ (all sequences)2b) pdb/ (all orginal pdb files) 2c) dimer/ all merged msa files2d) pymodel/ all models generated and the measuremenst (in csv files) to evalute their performance.3) In the director Figures/ all figures, scripts to generat them as well as summary of all predictions in a csv files is included<br>
DOI: 10.6084/m9.figshare.14654886.v1
title: Dataset for fold and dock

description: All models alignments and evalutations forthe dataset<br>
DOI: 10.6084/m9.figshare.14710153
title: Complement 9 in amyloid deposits

description: Amyloidosis is a disease group caused by pathological aggregation and deposition of peptides in diverse tissue sites. Apart from the fibril protein, amyloid deposits frequently enclose non-fibrillar constituents. In routine diagnostics, we noticed the presence of complement 9 (C9) in amyloid. Based on this observation, we systematically explored the occurrence of C9 in amyloid. Apolipoprotein E (apoE), caspase 3 and complement 3 (C3) served as controls. From the Amyloid Registry Kiel, we retrieved 118 formalin-fixed and paraffin-embedded tissue samples, including eight different amyloid- and 18 different tissue types. The expression patterns were assessed immunohistochemically in relation to amyloid deposits. A literature search on proteomic data was performed. Amyloid deposits stained for C9 and apoE in 117 (99.2%) and 112 of 118 (94.9%) cases, respectively. A homogeneous immunostaining of the entire amyloid deposits was found in 75.4% (C9) and 61.9% (apoE) of the cases. Caspase 3 and C3 were present only in 22 (19.3%) of 114 and 20 (36%) of 55 assessable cases, respectively. Caspase 3 and C3 immunostaining rarely covered substantial areas of the amyloid deposits. The literature search on proteomic data confirmed the frequent detection of apoE and the occurrence of C9 and C3 in amyloid deposits. No data were found regarding caspase 3. Our findings demonstrate the ubiquitous, spatial and specific enrichment of C9 in amyloid deposits irrespective of amyloid-, organ- or tissue type. Our findings lend support to the hypothesis that amyloidosis might activate the complement cascade, which could lead to the formation of the membrane attack complex and cell death.