cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11907987.v2
title: Primary research papers using androstadienone and/or estratetraenol from Reproducible research into human chemical communication by cues and pheromones: learning from psychology's renaissance

description: An Excel spreadsheet with a list of primary research articles reporting experiments using androstadienone and/or estratetraenol as the stimuli given to human subjects.
DOI: 10.6084/m9.figshare.11907987.v1
title: Primary research papers using androstadienone and/or estratetraenol from Reproducible research into human chemical communication by cues and pheromones: learning from psychology's renaissance

description: An Excel spreadsheet with a list of primary research articles reporting experiments using androstadienone and/or estratetraenol as the stimuli given to human subjects.
DOI: 10.6084/m9.figshare.11907963
title: Supplementay Information 1 from Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry

description: Nutrient assimilation genes
DOI: 10.6084/m9.figshare.11907963.v1
title: Supplementay Information 1 from Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry

description: Nutrient assimilation genes
DOI: 10.6084/m9.figshare.11907963.v2
title: Supplementay Information 1 from Linking regional shifts in microbial genome adaptation with surface ocean biogeochemistry

description: Nutrient assimilation genes
DOI: 10.6084/m9.figshare.11907927
title: Dataset S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: Datasets used in this study
DOI: 10.6084/m9.figshare.11907921
title: Table S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: The KEGG orthology groups and their genes used for phylogenetic tree construction
DOI: 10.6084/m9.figshare.11907927.v1
title: Dataset S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: Datasets used in this study
DOI: 10.6084/m9.figshare.11907921.v1
title: Table S1 from Revisiting the hypothesis of an energetic barrier to genome complexity between eukaryotes and prokaryotes

description: The KEGG orthology groups and their genes used for phylogenetic tree construction
DOI: 10.6084/m9.figshare.11907876
title: Where Should We Have the Meeting?

description: <b>Problem, research strategy, and findings:</b> Scholars and practitioners in the fields of planning, public participation, and consensus building have devised a variety of techniques for participatory decision making. Despite the ever-growing literatures on public participation, consensus building, and deliberative democracy, few scholars have studied perhaps the most elemental consideration in designing participatory processes: how to create physical environments for productive interactions and conversations. In this study, we address that gap in the scholarship on participatory decision making by answering two questions: What are planners are seeking to achieve when creating venues for engagement, participation, or collaboration? What are the tools at their disposal to do so? We interviewed practitioners with significant experience in the facilitation of planning processes, selected at random from the National Roster of Environmental Conflict Resolution Professionals, and developed a set of objectives and considerations for creating effective venues for participation and collaboration in planning. Based on our analysis, we find that <i>venue creation</i> involves three key dimensions: determining the appropriate venue-related process objectives, selecting a location, and arranging the chosen space. <b>Takeaway for practice:</b> Combining insights from existing guidance in handbooks and reports with the findings from our interviews, we developed the Venue Creation Tool to support more informed discussions and choices related to venues for participation and collaboration in planning.
DOI: 10.6084/m9.figshare.11907876.v1
title: Where Should We Have the Meeting?

description: <b>Problem, research strategy, and findings:</b> Scholars and practitioners in the fields of planning, public participation, and consensus building have devised a variety of techniques for participatory decision making. Despite the ever-growing literatures on public participation, consensus building, and deliberative democracy, few scholars have studied perhaps the most elemental consideration in designing participatory processes: how to create physical environments for productive interactions and conversations. In this study, we address that gap in the scholarship on participatory decision making by answering two questions: What are planners are seeking to achieve when creating venues for engagement, participation, or collaboration? What are the tools at their disposal to do so? We interviewed practitioners with significant experience in the facilitation of planning processes, selected at random from the National Roster of Environmental Conflict Resolution Professionals, and developed a set of objectives and considerations for creating effective venues for participation and collaboration in planning. Based on our analysis, we find that <i>venue creation</i> involves three key dimensions: determining the appropriate venue-related process objectives, selecting a location, and arranging the chosen space. <b>Takeaway for practice:</b> Combining insights from existing guidance in handbooks and reports with the findings from our interviews, we developed the Venue Creation Tool to support more informed discussions and choices related to venues for participation and collaboration in planning.
DOI: 10.6084/m9.figshare.11907834
title: Non-invasive targeted iontophoretic delivery of cetuximab to skin

description: <b>Background</b>: Cetuximab (CTX) is a glycosylated anti-EGFR monoclonal antibody of great interest in the treatment of non-melanoma skin cancers. Its intravenous administration is associated with severe side effects. This is the first report on the noninvasive iontophoretic-targeted topical delivery of CTX to skin. <b>Methods</b>: Iontophoretic transport of CTX (0.5 mA/cm<sup>2</sup>) was studied as a function of formulation pH (4, 5.5 and 7) and duration of current application (2, 4 and 8 h). CTX cutaneous biodistribution was determined; electrotransport mechanisms and penetration pathways were investigated. <b>Results</b>: Electrophoretic mobility measurements of CTX isoforms and co-iontophoresis of acetaminophen at each pH demonstrated that CTX electrotransport was due to electroosmosis: despite an ~8-fold reduction in charge, CTX skin deposition was greater at pH 7 than pH 4 (8.974 ± 1.952 and 0.482 ± 0.165 μg/mm<sup>3</sup>) – consistent with the increased electroosmotic flow at pH 7. Iontophoresis of an Alex488-CTX conjugate showed that skin penetration occurred by the intercellular and follicular routes. Therapeutic concentrations of CTX in the viable epidermis, upper dermis and lower dermis were achieved following iontophoresis for 2, 4 and 8 h, respectively. <b>Conclusion</b>: The results demonstrate the topical delivery of a 152 kDa monoclonal antibody into skin in a targeted, controlled and entirely noninvasive manner.
DOI: 10.6084/m9.figshare.11907834.v1
title: Non-invasive targeted iontophoretic delivery of cetuximab to skin

description: <b>Background</b>: Cetuximab (CTX) is a glycosylated anti-EGFR monoclonal antibody of great interest in the treatment of non-melanoma skin cancers. Its intravenous administration is associated with severe side effects. This is the first report on the noninvasive iontophoretic-targeted topical delivery of CTX to skin. <b>Methods</b>: Iontophoretic transport of CTX (0.5 mA/cm<sup>2</sup>) was studied as a function of formulation pH (4, 5.5 and 7) and duration of current application (2, 4 and 8 h). CTX cutaneous biodistribution was determined; electrotransport mechanisms and penetration pathways were investigated. <b>Results</b>: Electrophoretic mobility measurements of CTX isoforms and co-iontophoresis of acetaminophen at each pH demonstrated that CTX electrotransport was due to electroosmosis: despite an ~8-fold reduction in charge, CTX skin deposition was greater at pH 7 than pH 4 (8.974 ± 1.952 and 0.482 ± 0.165 μg/mm<sup>3</sup>) – consistent with the increased electroosmotic flow at pH 7. Iontophoresis of an Alex488-CTX conjugate showed that skin penetration occurred by the intercellular and follicular routes. Therapeutic concentrations of CTX in the viable epidermis, upper dermis and lower dermis were achieved following iontophoresis for 2, 4 and 8 h, respectively. <b>Conclusion</b>: The results demonstrate the topical delivery of a 152 kDa monoclonal antibody into skin in a targeted, controlled and entirely noninvasive manner.
DOI: 10.6084/m9.figshare.11907759
title: Primers list

description: Complete list of primer sequences used for qPCR, cloning, Sanger sequencing.
DOI: 10.6084/m9.figshare.11907741
title: Table S2 - classes of differentially expressed genes in Nutlin-treated SJSA1 cells

description: Differentially expressed genes from total, subpolysomal and polynomial RNAs extracted from SJSA1 cells treated with 10 micromolar Nutlin for 16 hour. The various tabs contain: DESeq output for TOTAL RNADifferentially Expressed Genes for Total RNADESeq output for POLYSOMAL RNADifferentially Expressed Genes for POLYSOMAL RNADESeq output for SUBPOLYSOMAL RNADifferentially Expressed Genes for SUBPOLYSOMAL RNAList of upregulated DEGs List of down regulated DEGs
DOI: 10.6084/m9.figshare.11907759.v1
title: Primers list

description: Complete list of primer sequences used for qPCR, cloning, Sanger sequencing.
DOI: 10.6084/m9.figshare.11907735
title: Data for AGU Radio Science paper: Semi-analytical model of the Rician K-factor

description: The data comprises the field scattered by a cloud of electric dipoles, both loaded and unloaded as well as rectangular plates. Scripts to produce plots in paper "Semi-analytical model of the Rician K-factor" submitted to AGU Radio Science periodical are also attached.
DOI: 10.6084/m9.figshare.11907741.v1
title: Table S2 - classes of differentially expressed genes in Nutlin-treated SJSA1 cells

description: Differentially expressed genes from total, subpolysomal and polynomial RNAs extracted from SJSA1 cells treated with 10 micromolar Nutlin for 16 hour. The various tabs contain: DESeq output for TOTAL RNADifferentially Expressed Genes for Total RNADESeq output for POLYSOMAL RNADifferentially Expressed Genes for POLYSOMAL RNADESeq output for SUBPOLYSOMAL RNADifferentially Expressed Genes for SUBPOLYSOMAL RNAList of upregulated DEGs List of down regulated DEGs
DOI: 10.6084/m9.figshare.11907735.v1
title: Data for AGU Radio Science paper: Semi-analytical model of the Rician K-factor

description: The data comprises the field scattered by a cloud of electric dipoles, both loaded and unloaded as well as rectangular plates. Scripts to produce plots in paper "Semi-analytical model of the Rician K-factor" submitted to AGU Radio Science periodical are also attached.
DOI: 10.5522/04/11907687
title: Mouse Platelet Dataset

description: Genotypes and phenotypes of 1329 mice and 19877 SNPs from (Nicod et al. Nature Genetics 2016) for platelet counts on mouse chromosome 11<br>Data are formatted as a binary RData list object.After downloading the data can be read into R using the command<br>&gt; load("chr11.PLT.Rdata")<br>which will load a list object called "D" with the following structure:<br><br>&gt; str(D) List of 6 $ y : num [1:1329, 1] 0.7878 2.2329 -0.3572 -0.6059 -0.0768 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : NULL ..- attr(*, "scaled:center")= num 4.08 ..- attr(*, "scaled:scale")= num 253 ..- attr(*, "names")= chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... $ geno : num [1:1329, 1:19877] 0.404 0.365 0.338 -0.614 0.345 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : NULL $ cov : num [1:1329, 1] 0 0 0 0 0 0 0 0 0 0 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr "intercept" $ map :'data.frame': 19877 obs. of 4 variables: ..$ CHR: Factor w/ 1 level "chr11": 1 1 1 1 1 1 1 1 1 1 ... ..$ POS: int [1:19877] 3200246 3205355 3218908 3414044 3460427 3462290 3462323 3462325 3462348 3464016 ... ..$ REF: Factor w/ 4 levels "A","C","G","T": 3 4 1 1 2 1 1 4 4 1 ... ..$ ALT: Factor w/ 4 levels "A","C","G","T": 1 2 2 3 4 4 4 1 2 4 ... $ maf : num [1:19877] 0.0511 0.0476 0.0579 0.0428 0.0389 ... $ kinship: num [1:1329, 1:1329] 0.9969 -0.0567 -0.0784 0.855 0.0051 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... &gt; <br>
DOI: 10.6084/m9.figshare.11907708
title: Table S1 - classes of differentially expressed genes in Nutlin-treated HCT116 cells

description: Differentially expressed genes from total, subpolysomal and polynomial RNAs extracted from HCT116 cells treated with 10 micromolar Nutlin for 16 hour. The various tabs contain: DESeq output for TOTAL RNADifferentially Expressed Genes for Total RNA<br>DESeq output for POLYSOMAL RNADifferentially Expressed Genes for POLYSOMAL RNADESeq output for SUBPOLYSOMAL RNADifferentially Expressed Genes for SUBPOLYSOMAL RNAList of upregulated DEGs List of down regulated DEGs<br>
DOI: 10.6084/m9.figshare.11907708.v1
title: Table S1 - classes of differentially expressed genes in Nutlin-treated HCT116 cells

description: Differentially expressed genes from total, subpolysomal and polynomial RNAs extracted from HCT116 cells treated with 10 micromolar Nutlin for 16 hour. The various tabs contain: DESeq output for TOTAL RNADifferentially Expressed Genes for Total RNA<br>DESeq output for POLYSOMAL RNADifferentially Expressed Genes for POLYSOMAL RNADESeq output for SUBPOLYSOMAL RNADifferentially Expressed Genes for SUBPOLYSOMAL RNAList of upregulated DEGs List of down regulated DEGs<br>
DOI: 10.5522/04/11907687.v1
title: Mouse Platelet Dataset

description: Genotypes and phenotypes of 1329 mice and 19877 SNPs from (Nicod et al. Nature Genetics 2016) for platelet counts on mouse chromosome 11<br>Data are formatted as a binary RData list object.After downloading the data can be read into R using the command<br>&gt; load("chr11.PLT.Rdata")<br>which will load a list object called "D" with the following structure:<br><br>&gt; str(D) List of 6 $ y : num [1:1329, 1] 0.7878 2.2329 -0.3572 -0.6059 -0.0768 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : NULL ..- attr(*, "scaled:center")= num 4.08 ..- attr(*, "scaled:scale")= num 253 ..- attr(*, "names")= chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... $ geno : num [1:1329, 1:19877] 0.404 0.365 0.338 -0.614 0.345 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : NULL $ cov : num [1:1329, 1] 0 0 0 0 0 0 0 0 0 0 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : NULL .. ..$ : chr "intercept" $ map :'data.frame': 19877 obs. of 4 variables: ..$ CHR: Factor w/ 1 level "chr11": 1 1 1 1 1 1 1 1 1 1 ... ..$ POS: int [1:19877] 3200246 3205355 3218908 3414044 3460427 3462290 3462323 3462325 3462348 3464016 ... ..$ REF: Factor w/ 4 levels "A","C","G","T": 3 4 1 1 2 1 1 4 4 1 ... ..$ ALT: Factor w/ 4 levels "A","C","G","T": 1 2 2 3 4 4 4 1 2 4 ... $ maf : num [1:19877] 0.0511 0.0476 0.0579 0.0428 0.0389 ... $ kinship: num [1:1329, 1:1329] 0.9969 -0.0567 -0.0784 0.855 0.0051 ... ..- attr(*, "dimnames")=List of 2 .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... .. ..$ : chr [1:1329] "Q_CFW-SW/100.0a" "Q_CFW-SW/100.0c" "Q_CFW-SW/100.0d" "Q_CFW-SW/100.0e" ... &gt; <br>
DOI: 10.6084/m9.figshare.11907384
title: The Pikermian tortoises (Testudines, Testudinidae) from the late Miocene of the South Balkans

description: This article deals with the fossil tortoises of one of the most iconic fossil localities of the Neogene of the Old World, the upper Miocene locality of Pikermi, near Athens, Greece. We describe the type, previously published, and new material of the fossil tortoises from Pikermi, along with new material from the coeval Azmaka 6 locality in Bulgaria. This combined information results in the complete revision of the ‘marble tortoise’ <i>Testudo marmorum</i>, which is the first turtle species ever named from Greece. Besides the challenges and difficulties of working with material from the old collections of Pikermi, we present a complete revision of this species and identify its presence outside its type locality in the South Balkan Peninsula. The presence of numerous shells of the ‘marble tortoise’ allows us to discuss the observed variation and attempt to interpret it as the result of intraspecific variation, ontogenetic changes, or sexual dimorphism. For the first time, we observe the absence of the characteristic hypo-xiphiplastral hinge in female individuals of <i>Testudo marmorum</i>, which in turn challenges the traditional phylogenetic position of this species. We further describe previously published and new material of the giant tortoise <i>Titanochelon</i> from Pikermi. Based on the updated information, we can suggest that the Pikermian giant tortoise probably represents a distinct taxon. Our results signal Pikermi as one of the most important localities to understand the evolution of tortoises in the eastern Mediterranean during the last parts of the Neogene.
DOI: 10.6084/m9.figshare.11907384.v1
title: The Pikermian tortoises (Testudines, Testudinidae) from the late Miocene of the South Balkans

description: This article deals with the fossil tortoises of one of the most iconic fossil localities of the Neogene of the Old World, the upper Miocene locality of Pikermi, near Athens, Greece. We describe the type, previously published, and new material of the fossil tortoises from Pikermi, along with new material from the coeval Azmaka 6 locality in Bulgaria. This combined information results in the complete revision of the ‘marble tortoise’ <i>Testudo marmorum</i>, which is the first turtle species ever named from Greece. Besides the challenges and difficulties of working with material from the old collections of Pikermi, we present a complete revision of this species and identify its presence outside its type locality in the South Balkan Peninsula. The presence of numerous shells of the ‘marble tortoise’ allows us to discuss the observed variation and attempt to interpret it as the result of intraspecific variation, ontogenetic changes, or sexual dimorphism. For the first time, we observe the absence of the characteristic hypo-xiphiplastral hinge in female individuals of <i>Testudo marmorum</i>, which in turn challenges the traditional phylogenetic position of this species. We further describe previously published and new material of the giant tortoise <i>Titanochelon</i> from Pikermi. Based on the updated information, we can suggest that the Pikermian giant tortoise probably represents a distinct taxon. Our results signal Pikermi as one of the most important localities to understand the evolution of tortoises in the eastern Mediterranean during the last parts of the Neogene.
DOI: 10.6084/m9.figshare.11907330
title: A New Bifuzzy Optimization Method for Remanufacturing Scheduling Using Extended Discrete Particle Swarm Optimization Algorithm

description: This is the experimental data of the manuscript entitled “A New Bifuzzy Optimization Method for Remanufacturing Scheduling Using Extended Discrete Particle Swarm Optimization Algorithm”. All data are generated through computer simulation and saved in the file with csv format. There are 32 instances for these experiments. The datasets show the number of end-of-life products, the number of non-identical parallel processing lines and the number of processing cells in each processing line. The bifuzzy processing time and bifuzzy processing cost of each product remanufactured at each processing cell of each line and the bifuzzy processing reliability of each product remanufactured at each processing line also show in the datasets. Each bifuzzy variables in the data is composed of five groups of triangular fuzzy numbers with possibilities. The values in each group represent the smallest possible value of triangular fuzzy number, the most promising value of triangular fuzzy number , the largest possible value of triangular fuzzy number, and the possibility of this bifuzzy vairbale to take the triangular fuzzy number in this group by this bifuzzy variable.
DOI: 10.6084/m9.figshare.11907333
title: A New Bifuzzy Optimization Method for Remanufacturing Scheduling Using Extended Discrete Particle Swarm Optimization Algorithm

description: This is the experimental data of the manuscript entitled “A New Bifuzzy Optimization Method for Remanufacturing Scheduling Using Extended Discrete Particle Swarm Optimization Algorithm”. All data are generated through computer simulation and saved in the file with csv format. There are 32 instances for these experiments. The datasets show the number of end-of-life products, the number of non-identical parallel processing lines and the number of processing cells in each processing line. The bifuzzy processing time and bifuzzy processing cost of each product remanufactured at each processing cell of each line and the bifuzzy processing reliability of each product remanufactured at each processing line also show in the datasets. Each bifuzzy variables in the data is composed of five groups of triangular fuzzy numbers with possibilities. The values in each group represent the smallest possible value of triangular fuzzy number, the most promising value of triangular fuzzy number, the largest possible value of triangular fuzzy number, and the possibility of this bifuzzy vairbale to take the triangular fuzzy number in this group by this bifuzzy variable.
DOI: 10.6084/m9.figshare.11907216
title: All SATD predictors with normalized coefficients and p-values

description: This table includes all the SATD predictors from commit contents with normalized coefficients and p-values.<br><br>
DOI: 10.6084/m9.figshare.11907189
title: Database_S1.xlsx

description: This dataset describes the species tree assembly, provides the aridity, CV of precipitation, plant duration, weediness and seed heteromorphism data, and gives data sources associated with the manuscript titled "Offspring polymorphism and bet hedging: a large-scale, phylogenetic analysis," published in Ecology Letters.
DOI: 10.6084/m9.figshare.11907138
title: Oryx.txt

description: Tri-axial acceleration and geomagnetism dataset for different species (e.g., Arabian Oryx, Domestic sheep, Loggerhead turtle and Aldabra tortoise)
DOI: 10.6084/m9.figshare.11907138.v1
title: Oryx.txt

description: Tri-axial acceleration and geomagnetism dataset for different species (e.g., Arabian Oryx, Domestic sheep, Loggerhead turtle and Aldabra tortoise)
DOI: 10.6084/m9.figshare.11907129
title: Simulated spectrum peak wave period (3-hourly, 2015.01-2100.12) from FIO-ESM v2.0 ssp245 experiment r1i1p1f1

description: Simulated spectrum peak wave period (3-hourly, 2015.01-2100.12) from FIO-ESM v2.0 ssp245 experiment (one of future scenarios) r1i1p1f1. The grid, named gx1v6, is the displaced pole (the North Pole displaced to the Greenland) grid with 1.1 degree in longitude and 0.27-0.54 degree in latitude.