cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive108512.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108513.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108514.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108515.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108516.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108517.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108518.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108519.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108520.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108521.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108522.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108523.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108524.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108525.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108526.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108527.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108528.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108529.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108530.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108531.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108532.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108533.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108534.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.ysqtkk
title: Occurrence Download

description: A dataset containing 469 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribution of Geodia species in the Atlantic boreo-arctic region"
 ]
}

 The dataset includes 469 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060122-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive108535.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108536.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108537.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108538.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108539.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108540.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108541.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108542.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108543.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108544.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108545.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108546.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108547.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108548.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108549.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.48597/zey2-b945
title: Measurement of Heavy metals at Stará Lesná

description: Measurement of Heavy metals at Stará Lesná
DOI: 10.48597/zsn8-cgce
title: Measurement of Manganese at Chopok

description: Measurement of Manganese at Chopok
DOI: 10.48597/rp4y-qp37
title: Measurement of Susp_part_matter at Chopok

description: Measurement of Susp_part_matter at Chopok
DOI: 10.48597/a9uc-9skr
title: Measurement of Heavy metals and susp_part_matter at Chopok

description: Measurement of Heavy metals and susp_part_matter at Chopok
DOI: 10.48597/qx6k-g9mw
title: Measurement of HCBD at Alert

description: Measurement of HCBD at Alert
DOI: 10.48597/6b64-njas
title: Measurement of Heavy metals at Starina

description: Measurement of Heavy metals at Starina
DOI: 10.48597/k73f-zcep
title: Measurement of Heavy metals and pm10_mass at Stará Lesná

description: Measurement of Heavy metals and pm10_mass at Stará Lesná
DOI: 10.48597/sy9n-3rb4
title: Measurement of Heavy metals and pm10_mass at Starina

description: Measurement of Heavy metals and pm10_mass at Starina
DOI: 10.48597/36t8-9hbs
title: Measurement of Heavy metals at Topolniky

description: Measurement of Heavy metals at Topolniky
DOI: 10.48597/7nka-a2ue
title: Measurement of Heavy metals at Starina

description: Measurement of Heavy metals at Starina
DOI: 10.48597/dkbr-36yt
title: Measurement of Heavy metals at Stará Lesná

description: Measurement of Heavy metals at Stará Lesná
DOI: 10.48597/emrs-ccu7
title: Measurement of Heavy metals at Stará Lesná

description: Measurement of Heavy metals at Stará Lesná
DOI: 10.48597/nk9g-e8un
title: Measurement of Heavy metals at Chopok

description: Measurement of Heavy metals at Chopok
DOI: 10.48597/9gjx-c5fv
title: Measurement of Pentachlorobenzene at Alert

description: Measurement of Pentachlorobenzene at Alert
DOI: 10.6084/m9.figshare.30051382
title: Genetic analysis of <i>Ornithobacterium rhinotracheale</i> isolates: an Australian perspective

description: This study examined the genetic diversity in a collection of field isolates of <i>Ornithobacterium rhinotracheale</i> and compared that with the diversity in the serovars A–D and F–I reference strains and available whole genome sequences. Phylogenetic analysis of the 16S rRNA gene of the nine Australian isolates and twelve sequences of overseas isolates resulted in six clusters with the Australian isolates not closely related to either the type strain or the serovar reference strains. The suitability of low-cost finger printing techniques, ERIC-PCR and rep-PCR, when applied to <i>O. rhinotracheale</i> were also evaluated. The fingerprints generated through ERIC-PCR were more informative and this method subsequently used to examine the genetic diversity of the isolates and the reference strains. The ERIC-PCR patterns confirmed the isolates and strains were quite diverse, with 15 different patterns detected. These results suggested that the Australian isolates were genetically distinct from the overseas strains, consistent with the genetic distinction observed in the phylogenetic study. Whole genome sequences of the Australian isolate BR2963 and the 15 genomes identified as <i>O. rhinotracheale</i> in the Genome Taxonomy Database confirmed that serovars F, K and M form a cluster distinct from other <i>O. rhinotracheale</i> and probably represent a distinct species within the genus <i>Ornithobacterium</i>. Additionally, the Australian isolate BR2963 had an average nucleotide identity level with the <i>O. rhinotracheale</i> type strain (DSM15997<sup>T</sup>) below the accepted 95% threshold for species suggesting that the isolate is a member of the genus <i>Ornithobacterium</i> but not within the species <i>rhinotracheale</i>.
DOI: 10.6084/m9.figshare.30051382.v2
title: Genetic analysis of <i>Ornithobacterium rhinotracheale</i> isolates: an Australian perspective

description: This study examined the genetic diversity in a collection of field isolates of <i>Ornithobacterium rhinotracheale</i> and compared that with the diversity in the serovars A–D and F–I reference strains and available whole genome sequences. Phylogenetic analysis of the 16S rRNA gene of the nine Australian isolates and twelve sequences of overseas isolates resulted in six clusters with the Australian isolates not closely related to either the type strain or the serovar reference strains. The suitability of low-cost finger printing techniques, ERIC-PCR and rep-PCR, when applied to <i>O. rhinotracheale</i> were also evaluated. The fingerprints generated through ERIC-PCR were more informative and this method subsequently used to examine the genetic diversity of the isolates and the reference strains. The ERIC-PCR patterns confirmed the isolates and strains were quite diverse, with 15 different patterns detected. These results suggested that the Australian isolates were genetically distinct from the overseas strains, consistent with the genetic distinction observed in the phylogenetic study. Whole genome sequences of the Australian isolate BR2963 and the 15 genomes identified as <i>O. rhinotracheale</i> in the Genome Taxonomy Database confirmed that serovars F, K and M form a cluster distinct from other <i>O. rhinotracheale</i> and probably represent a distinct species within the genus <i>Ornithobacterium</i>. Additionally, the Australian isolate BR2963 had an average nucleotide identity level with the <i>O. rhinotracheale</i> type strain (DSM15997<sup>T</sup>) below the accepted 95% threshold for species suggesting that the isolate is a member of the genus <i>Ornithobacterium</i> but not within the species <i>rhinotracheale</i>.
DOI: 10.48597/3pga-p8xc
title: Measurement of Pentachlorobenzene at Alert

description: Measurement of Pentachlorobenzene at Alert
DOI: 10.48597/7kqt-qbmy
title: Measurement of HCBD at Alert

description: Measurement of HCBD at Alert
DOI: 10.6084/m9.figshare.30051382.v1
title: Genetic Analysis of <i>Ornithobacterium rhinotracheale</i> isolates; An Australian perspective

description: This study examined the genetic diversity in a collection of field isolates of <i>Ornithobacterium rhinotracheale</i> and compared that with the diversity in the serovars A to D and F to I reference strains and available whole genome sequences. Phylogenetic analysis of the 16S rRNA gene of the nine Australian isolates and twelve sequences of overseas isolates resulted in six clusters with the Australian isolates not closely related to either the type strain or the serovar reference strains. The suitability of low cost finger-printing techniques, ERIC-PCR and rep-PCR, when applied to <i>O. rhinotracheale</i> were also evaluated. The fingerprints generated through ERIC-PCR were more informative and was subsequently used to examine the genetic diversity of the isolates and the reference strains. The ERIC-PCR patterns confirmed the isolates and strains were quite diverse, with 15 different patterns detected. These results suggested that the Australian isolates were genetically distinct from the overseas strains, consistent with the genetic distinction observed in the phylogenetic study. Whole genome sequences of the Australian isolate BR2963 and the 15 genomes identified as <i>O. rhinotracheale</i> in the Genome Taxonomy Database confirmed that serovars F, K and M form a cluster distinct from other <i>O. rhinotracheale</i> and probably represent a distinct species within the genus <i>Ornithobacterium</i>. As well, the Australian isolate BR2963 had an average nucleotide identity level with the <i>O. rhinotracheale</i> type strain (DSM15997<sup>T</sup>) below the accepted 95% threshold for species suggesting that the isolate is a member of the genus <i>Ornithohbacterium</i> but not within the species <i>rhinotracheale</i>.
DOI: 10.48597/69rx-b9mt
title: Measurement of Heavy metals at Starina

description: Measurement of Heavy metals at Starina
DOI: 10.48597/z5zz-mhy5
title: Measurement of Tetrachloroveratrole at Alert

description: Measurement of Tetrachloroveratrole at Alert
DOI: 10.48597/exa2-ptr3
title: Measurement of Heavy metals at Starina

description: Measurement of Heavy metals at Starina
DOI: 10.48597/g7nd-b436
title: Measurement of Heavy metals at Topolniky

description: Measurement of Heavy metals at Topolniky
DOI: 10.48597/rug6-ux4k
title: Measurement of Heavy metals and pm10_mass at Stará Lesná

description: Measurement of Heavy metals and pm10_mass at Stará Lesná
DOI: 10.48597/bsdc-ebru
title: Measurement of Heavy metals at Starina

description: Measurement of Heavy metals at Starina
DOI: 10.48597/ka49-jmya
title: Measurement of Heavy metals at Chopok

description: Measurement of Heavy metals at Chopok
DOI: 10.6084/m9.figshare.30061959
title: Osteomyelitis, arthritis and myositis associated with <i>Yersinia pseudotuberculosis</i> in village weavers (<i>Ploceus cucullatus</i>) and an oriental magpie robin (<i>Copsychus saularis</i>)

description: Avian pseudotuberculosis infection usually presents as well-demarcated visceral necrotic foci, typically affecting the gastrointestinal tract, liver and spleen. This case series describes an atypical presentation of <i>Yersinia pseudotuberculosis</i> (Yptb) characterized by severe chronic myositis, arthritis and osteomyelitis in five village weavers (<i>Ploceus cucullatus</i>), and acute osteomyelitis and myositis associated with septicaemia in an oriental magpie robin (<i>Copsychus saularis</i>) from a zoological collection. Clinical signs of the weavers included lethargy, poor flying ability and focally extensive periarticular and muscular swelling, whereas the magpie robin was found dead without premonitory signs. Radiography revealed focal lytic and proliferative bone lesions with loss of articular congruity and increased radiopacity of skeletal muscles, which was compatible with severe necrotizing, granulomatous osteomyelitis and polyphasic myositis with large intralesional bacterial colonies on histology. Most (<i>n</i> = 4/5) birds with available histology exhibited only mild to moderate heterophilic to histiocytic inflammatory lesions in their intestines, spleen and liver. Bacterial cultures typically yielded Yptb from joint and muscle samples (3/3), and less consistently from visceral organs (6/11) and bone marrow (0/5). Bacterial typing using Fourier-transform infrared (FT-IR) spectroscopy suggested that weaver Yptb strains were closely related. Whole genome sequencing of two Yptb strains identified one as ST14 serotype O:2a and the other ST42 serotype O:1a, with the presence of virulence genes including plasmid-borne <i>yadA</i> and chromosomally encoded virulence genes <i>ail</i> and <i>invA</i>. Weavers may be prone to develop atypical pseudotuberculosis with the musculoskeletal system as a predilection site for bacterial growth and associated granulomatous lesions.
DOI: 10.6084/m9.figshare.30061959.v1
title: Osteomyelitis, arthritis and myositis associated with <i>Yersinia pseudotuberculosis</i> in village weavers (<i>Ploceus cucullatus</i>) and an oriental magpie robin (<i>Copsychus saularis</i>)

description: Avian pseudotuberculosis infection usually presents as well-demarcated visceral necrotic foci, typically affecting the gastrointestinal tract, liver and spleen. This case series describes an atypical presentation of <i>Yersinia pseudotuberculosis</i> (Yptb) characterized by severe chronic myositis, arthritis and osteomyelitis in five village weavers (<i>Ploceus cucullatus</i>), and acute osteomyelitis and myositis associated with septicaemia in an oriental magpie robin (<i>Copsychus saularis</i>) from a zoological collection. Clinical signs of the weavers included lethargy, poor flying ability and focally extensive periarticular and muscular swelling, whereas the magpie robin was found dead without premonitory signs. Radiography revealed focal lytic and proliferative bone lesions with loss of articular congruity and increased radiopacity of skeletal muscles, which was compatible with severe necrotizing, granulomatous osteomyelitis and polyphasic myositis with large intralesional bacterial colonies on histology. Most (<i>n</i> = 4/5) birds with available histology exhibited only mild to moderate heterophilic to histiocytic inflammatory lesions in their intestines, spleen and liver. Bacterial cultures typically yielded Yptb from joint and muscle samples (3/3), and less consistently from visceral organs (6/11) and bone marrow (0/5). Bacterial typing using Fourier-transform infrared (FT-IR) spectroscopy suggested that weaver Yptb strains were closely related. Whole genome sequencing of two Yptb strains identified one as ST14 serotype O:2a and the other ST42 serotype O:1a, with the presence of virulence genes including plasmid-borne <i>yadA</i> and chromosomally encoded virulence genes <i>ail</i> and <i>invA</i>. Weavers may be prone to develop atypical pseudotuberculosis with the musculoskeletal system as a predilection site for bacterial growth and associated granulomatous lesions.
DOI: 10.6084/m9.figshare.30286519
title: Molecular and pathological evaluation of a velogenic Newcastle disease virus strain circulating in Vietnam

description: Newcastle disease virus (NDV) poses a major challenge to poultry farming in Vietnam as it continues to threaten both economic and food security. Despite vaccination efforts, outbreaks caused by velogenic NDV strains continue to occur, indicating gaps in our understanding of the pathogenicity of these viruses. In this study, a velogenic NDV strain (genotype VII.2) was isolated from vaccinated chickens during an outbreak in southern Vietnam. Whole genome sequencing and phylogenetic analyses confirmed that this isolate belongs to a genotype associated with virulent NDV strains. The strain had an intracerebral pathogenicity index (ICPI) of 1.81 and a mean-death-time (MDT) of 56 h. Experimental infection of domestic chickens showed a rapid onset of severe clinical signs, extensive tissue damage, and a high mortality rate, even in co-housed, uninfected chickens. Virus excretion via the oral cavity and cloaca of the experimental chickens facilitated rapid transmission within the flock. These results underscore the urgent need for enhanced epidemiological surveillance and tailored vaccination strategies to mitigate the impact of NDV outbreaks in Vietnam. This study provides important insights into the pathogenicity, transmission, and lesion profile of NDV genotype VII.2, contributing to the development of effective control measures. Velogenic NDV genotype VII.2 detected in vaccinated chickens in southern Vietnam.Isolate was highly virulent with ICPI 1.81 and MDT of 56 h.Rapid onset of disease, severe lesions, and efficient oral/cloacal viral shedding.Findings call for improved NDV surveillance and tailored vaccination in Vietnam. Velogenic NDV genotype VII.2 detected in vaccinated chickens in southern Vietnam. Isolate was highly virulent with ICPI 1.81 and MDT of 56 h. Rapid onset of disease, severe lesions, and efficient oral/cloacal viral shedding. Findings call for improved NDV surveillance and tailored vaccination in Vietnam.