cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/dn6np53538
title: Mendelian Randomized study for Atopic Dermatitis on Osteoporosis and Osteopenia

description: Using Mendelian randomization to analyze the causal effect of AD on osteoporosis and bone loss. 19 single-nucleotide polymorphisms were detected in Genome-Wide Association Studies (GWASs) database from IEU GWASs Project. The outcomes were Osteoporosis and Osteopenia, the subset differed by bone and age. MR-Egger regression, Inverse variance weighted, weighted median, weighted mode, and simple mode was conducted for MR analyses.
DOI: 10.17632/vw5ghdk7zm
title: Zophobas morio - abf files- raw UHPLC data - hemolymph and feces

description: This study explores the metabolic adaptability of Zophobas morio larvae when exposed to a diet containing Styrofoam, a polystyrene-based plastic. Our hypothesis is that the larvae possess metabolic, enzymatic, and genetic tools to degrade Styrofoam; however, this adaptation may result in metabolic imbalances or the accumulation of recalcitrant by-products. By examining metabolic profiles from their hemolymph and feces, we aim to identify biochemical pathways involved in plastic degradation and assess potential risks of metabolic bottlenecks or harmful by-products. Larvae were divided into three feeding groups: WB (wheat bran - 6) – a control group fed a standard wheat bran diet; WBPS (wheat bran and Styrofoam - 5) – a mixed diet group to assess partial substitution effects; PS (Styrofoam only -1) – a group fed solely on Styrofoam to evaluate full adaptation to plastic consumption.
Samples were collected from the hemolymph and feces of each group after a defined feeding period. Metabolite extraction was performed using a methanol-based protocol to ensure high recovery and compatibility with UHPLC-MS. Ultrahigh-performance liquid chromatography-mass spectrometry (UHPLC-MS) was employed for non-targeted metabolomic analysis.Data Description and Interpretation:The raw UHPLC-MS data include retention times, mass-to-charge ratios (m/z), and ion intensities for metabolites detected in hemolymph and feces from each feeding group. This allows for detailed comparisons of metabolic profiles across different diets. 
Utility of the Data: This dataset provides a foundation for understanding the metabolic pathways involved in plastic degradation in Zophobas morio. It is a valuable resource for identifying enzymes or pathways for biotechnological applications, such as engineered microbial systems for plastic waste management. Researchers can also use the data for comparative studies on other plastic-degrading organisms or assess environmental implications of Styrofoam degradation. How the Data Was Gathered:
The dataset represents raw UHPLC-MS outputs, including chromatographic retention times, spectral m/z values, and ion intensities. All experiments followed validated protocols for reproducibility, with randomized sample analysis to minimize batch effects and appropriate quality control standards included.
DOI: 10.17632/yp94gf3nby
title: Data for The evolution of video game accessibility on Xbox consoles in the Far Cry game series - 2023

description: Accessibility report on the Far Cry game series on Xbox for publication titled "The evolution of video game accessibility on Xbox consoles in the Far Cry game series".
DOI: 10.17632/gzhz7pjpg9
title: Data from: Iguanas on a hot tin roof: Effects of season and temperature on the daily activity patterns of the Motagua spiny-tailed iguana between forested and semi-urban areas

description: Dataset of recordings of VeDBA and ambient temperature related to activity records of 19 Motagua spiny-tailed iguana (Ctenosaura palearis) tracked from April to September of 2023 in Motagua valley, Guatemala, Central America.
DOI: 10.17632/xzpzs8tcdd
title: Data for: A novel multivariate grey model for forecasting the sequence of ternary interval numbers

description: MATLAB program for 4 models
DOI: 10.17632/jgy68s9ttg
title: 3-D thermal regime and petrologic metamorphism in Kuril-Kamchatka

description: The data include the 3-D temperature field (degrees Celsius), water content (wt%), dehydration rate (wt%/km), and subduction velocity field (cm/yr) of the subducting plate, as well as the coastline and volcano distribution in Kuril-Kamchatka. The data coordinates are an orthogonal coordinate system, where the origin of the coordinates is (156.00E,47.18N), the x+ azimuth is 133 degrees clockwise from the north, and the y+ azimuth is 43 degrees clockwise from the north, and the z+ direction is vertical downwards, in kilometers. The data of the model region have dimensions of 1800×800×400 km (length×width×depth). The geometry of the subducted plate is well constrained by Slab2.0, and the plate ages are provided by EarthByte. The temperature boundary condition agrees with the plate cooling model. The bottom of the slab and the perpendicular plane are prescribed as adiabatic and permeable, and the top surface is set to a fixed temperature (0°C) and is rigid.  The data was acquired through 3-D numerical thermal modeling which was developed from originally code stag3d. An anelastic liquid approximation and the equations of conservation of mass, momentum, and energy are used in this model. Based on a three-dimensional thermomechanical model and the collect earthquake catalog from IRIS, the data of the slab thermal state, water content, and slab dehydration distribution in Kuril-Kamchatka are calculated.
DOI: 10.17632/9x9vjwd7ry
title: Germination of grass caryopses at increasing water deficit under simulated current and future temperature regimes

description: Our proposal was to study the impacts of increasing water stress and temperature on the survival and germination of caryopses of neotropical grass species occurring in dry- and wet grasslands of the Cerrado biome (Brazil). The Cerrado is the second largest biome of the South America, largely covered by savanna and other vegetation types subjected to periodic fires, as the grasslands. Considering that dry grasslands are subjected to higher soil temperatures and water deficit than wet grasslands, our expectation was that caryopses from dry grassland species would be more tolerant to both increasing water stress and higher temperatures (predicted for the future) than caryopses from wet grassland species. We found that more intense water stress reduced the survival of caryopses for both dry and wet grassland species. Temperature regime predicted for the future reduced the viability of wet grassland species and affected the germination strategy of dry grassland species. These results indicate that increasing water stress and temperature predicted for the future may compromise the recruitment potential of dry and wet grassland species, thus directly impacting the dynamics and resilience of these ecosystems in a future scenario. 
This study was recently accepted for publication at the American Journal of Botany (2022). The table here provided brings data on the germinability (%), median germination time (T50, in hours) and viability (%) of neotropical grass caryopses from dry and wet grasslands subjected to increasing water stress treatments under simulated current and future temperature regimes. We have organized the data to facilitate its analysis in R. It is quite self-explanatory, but one can find a tab (metadata) which details each variable. The R script used in the present study is also provided.
DOI: 10.17632/2htwb6pvhc
title: Acoustic monitoring of owls in Alps

description: The study was carried out in the Alps region. The study sites were located at an altitude of 630 – 1260 m a. s. l. Managed forests were selected from areas managed by the Bundesforste organization (N 47,792390°, E 15,003097° and N 47,788820°, E 14,873991° and one in N 47,271191°, E 12,790635°). Protected areas were localized in the Wildnisgebiet Durrenstein (WGD, N 47,762007°, E 15,021724°), Nature Reserve Kesselfall (N 47,213183°, E 12,722890°) and NP Gesause (N 47,586255°, E 14,640948°). 

This study compares the number of owl territories in managed and protected areas in the first goal. The second goal is aimed at the impact of the environment on owl assemblages.    

The data represent a table containing the results for the lines with the number of owl territories and information about environmental parameters in the 300 m buffer around the line.
DOI: 10.15468/dl.nchunx
title: Occurrence Download

description: A dataset containing 3313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Setaria palmifolia (J.Koenig) Stapf)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3313 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001583-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ydm2rfk9sn
title: Rethinking causality and data complexity in brain lesion-behaviour inference and its implications for lesion-behaviour modelling

description: Simulation MATLAB scripts, simulated behavioural data, and VLBM/MLBM topograhpies. See the methods sections in "Rethinking causality and data complexity in brain lesion-behaviour inference and its implications for lesion-behaviour modelling" (working title) for more information, e.g. what analysis software has been used. All simulations have been done using a publicly available lesion data set, as available in the LESYMAP software (Pustina et al., 2018). See the README files in each subfolder for additional information.
DOI: 10.17632/wtrhpzyh5m
title: A study of Identification of XAF1 as an endogenous AKT inhibitor. Chen et al

description: Original western blot images of manuscript entitled “Identification of XAF1 as an endogenous AKT inhibitor” (CELL-REPORTS-D-22-04698R2) as a Research Article at Cell Reports.
DOI: 10.17632/9z3r3gwfj7
title: Data for: Physico-chemical characterisation of Ti-Nb-Sn alloys surfaces and their osteogenic properties

description: The cytotoxicity and bioactivity of binary Ti-40Nb and Ti-10Sn and ternary Ti-10Nb-5Sn alloys, candidates for bioengineering applications, have been studied in view of establishing their osteogenic potential compared to that of c.p. Ti. Cellular population growth was used to assess proliferative (using PrestoBlue) and differentiative phenotypes (via protein and Alkaline phosphatase markers), coupled with gene expression (i.e. Runx2 and OCN) to confirm maturation. Their physical (i.e. wettability reported as contact angle, electrical state near the surface, i.e. surface Z potential) and chemical properties (i.e. oxide layer thickness and composition, (esp. TiO2 % content)) were analysed independently from topology and roughness (data provided).
DOI: 10.17632/sfy2w92466
title: Matrix elements of the reaction matrix in finite nuclei

description: Title of program: REFERENCE REACTION MATRIX Catalogue Id: ABIE_v1_0 Nature of problem Matrix elements of the reaction matrix in finite nuclei are computed in the relative center-of-mass (RCM) harmonic-oscillator representation. A harmonic oscillator Pauli operator is employed together with purely kinetic particle states. The approach used follows that of Sauer. The Reid soft-core potential is employed in the code discussed. Versions of this program held in the CPC repository in Mendeley Data abie_v1_0; REFERENCE REACTION MATRIX; 10.1016/0010-4655(76)90043-6 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/s8ktckvspv
title: Mouse embryonic stem cells embody organismal level cold resistance. Suita K et al.

description: Raw data and codes in the following study. The commons folder including the shared codes used throughout the analysis is included in the Figure1.zip. 

During hibernation, some mammals show low body temperatures (< 10 °C). Tissues from such hibernators exhibit cold resistance even when the animal is not hibernating. Mice can also enter hypothermic fasting-induced torpor (FIT), but the cold resistance of FIT has never been related to their tissues. Here, we show that an inbred mouse STM2 exhibits lower body temperature during FIT than C57BL/6J or MYS/Mz. Thus, STM2 resists the cold more than other strains. A strain-specific mouse embryonic stem (ES) cell proved that STM2 ES cells are more cold-resistant than others. Pharmacological intervention and transcriptome analysis suggest that STM2 ES cells rely on the oxidative phosphorylation (OXPHOS) pathway but respire independently of the electron transfer chain complex I in the cold. We also found that the liver of STM2 uses OXPHOS more in cold than other strains. This study demonstrates that an organismal phenotype of torpor can be studied in an in vitro setup using mouse cells.

Figure 1 | STM2 shows lower body temperature at fasting-induced torpor.
Figure 2 | ES cell–establishment from mouse inbred strains.
Figure 3 | The metabolic pathway preference of STM2 ES cells is unchanged under low temperatures.
Figure 4 | STM2 ES cells own a temperature-insensitive complex I–independent respiration.
Figure 5 | Transcriptome analysis of cold-cultured ES cells reveals STM2 has suppressed expression of the CI–related genes.
Figure 6 | STM2 tissues show cold-resistance.
DOI: 10.17632/sfsypw9bwz
title: CMAC Neural Networks

description: The Cerebellar Model Articulation Controller (CMAC) is an influential cerebrum propelled processing model in numerous pertinent fields. There are different researches done using CMAC in many applications using its characteristics in easy implementation and good results for example: facial expression recognition, pattern recognition etc. In this paper we have presented some methods of using CMAC and presents their results.
DOI: 10.17632/483x8sgtww
title: ROOT — A C++ framework for petabyte data storage, statistical analysis and visualization

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract A new stable version (“production version”) v5.28.00 of ROOT [1] has been published [2]. It features several major improvements in many areas, most noteworthy data storage performance as well as statistics and graphics features. Some of these improvements have already been predicted in the original publication Antcheva et al. (2009) [3]. This version will be maintained for at least 6 months; new minor revisions (“patch releases”) will be published [4] to solve problems reported with this vers... Title of program: ROOT Catalogue Id: AEFA_v2_0 Nature of problem Storage, analysis and visualization of scientific data Versions of this program held in the CPC repository in Mendeley Data AEFA_v1_0; ROOT; 10.1016/j.cpc.2009.08.005 AEFA_v2_0; ROOT; 10.1016/j.cpc.2011.02.008
DOI: 10.17632/4pgc3zcs7w
title: Fortran code for SU(3) lattice gauge theory with and without MPI checkerboard parallelization

description: Abstract We document plain Fortran and Fortran MPI checkerboard code for Markov chain Monte Carlo simulations of pure SU(3) lattice gauge theory with the Wilson action in D dimensions. The Fortran code uses periodic boundary conditions and is suitable for pedagogical purposes and small scale simulations. For the Fortran MPI code two geometries are covered: the usual torus with periodic boundary conditions and the double-layered torus as defined in the paper. Parallel computing is performed on checkerb... Title of program: STMC2LSU3MPI Catalogue Id: AEMJ_v1_0 Nature of problem Physics of pure SU(3) Quantum Field Theory (QFT). This is relevant for our understanding of Quantum Chromodynamics (QCD). It includes the glueball spectrum, topological properties and the deconfining phase transition of pure SU(3) QFT. For instance, Relativistic Heavy Ion Collision (RHIC) experiments at the Brookhaven National Laboratory provide evidence that quarks confined in hadrons undergo at high enough temperature and pressure a transition into a Quark-Gluon Plasma (QGP). Investigations of ... Versions of this program held in the CPC repository in Mendeley Data AEMJ_v1_0; STMC2LSU3MPI; 10.1016/j.cpc.2012.03.021 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/jnp8yn7pmw
title: Geochemistry of sediment and pore water from pockmarks and reference stations in the SE Baltic Sea

description: Sediment cores were collected using Rumohr Lot corer equipped with plexiglass core liners. Pore waters were extracted from intact and sealed sediment cores without contact with the air  with using Rhizon® samplers. The first one was placed a few centimeters above the sediment-water interface to collect sample of near-bottom water. Methods used: Sediment: Iron speciation - sequential extraction [Poulton and Canfield, 2005]; Total iron (FeTOT) - mineralization in a microwave mineralizer (ETHOS One, Milestone) with a mixture of concentrated HCl, HNO3 and HF followed with flame atomic absorption spectroscopy (Perkin-Elmer); Methane (CH4) - standard headspace techniques on a gas chromatograph (Perkin Elmer) equipped with a flame ionization detector FID and a HP- INNOWAX column (30 m, 0.32 mm, 0.5 µm); Loss on ignition (LOI) - ignition of sediment samples at 550 °C to the constant mass. Pore water: Concentration of chloride (Cl-) and sulfate (SO42-) - ion chromatography (DIONEX ICS 1100/RFIC1600/20); Dissolved inroganic (DIC) and organic (DOC) carbon - TOC analyser VarioTOC Cube (Elementar GmbH) equipped with a nondispersive infrared (NDIR) detector; Concentration of hydrogen sulfide (∑H2S), ammonia (ΣNH4+) and phosphate (∑PO43-) - standard spectrophotometric methods [Grasshoff et al., 1999];  Concentration of iron (Fe2+) - Inductively Coupled Plasma Mass Spectroscope (ICP-OES) (Perkin-Elmer model OPTIMA 8300).
DOI: 10.15468/dl.q6xh4v
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus lumholtzii B.L.Rob & Fernald"
 ]
}

 The dataset includes 197 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001622-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fjzmjzmp6h
title: Dataset_CO_Rainfall

description: Dataset of average daily CO concentration and daily rainfall accumulation from January 1, 2018 to December 31, 2021. This dataset is grouped by day (weekend/weekday) and COVID-19 pandemic lockdown period (Yes/No). This dataset is obtained from the observation/recording of air quality sensors at the Cibeureum BMKG Air Pollution Post.
DOI: 10.17632/7h6grmkwhg
title: PHF7 Modulates BRDT stability and Histone-to-Protamine Exchange during Spermiogenesis. Kim et al.

description: Original data of immunostaining images, Western blots, and coomassie gels
DOI: 10.17632/9zp2hh598z
title: Blue Native Gel C.1086 Variants

description: Figure 2D of manuscript titled "Structure-guided changes at the V2 apex of HIV-1 Clade C trimer enhance the elicitation of autologous neutralizing and broad V1V2-scaffold antibodies"
Blue native PAGE (BN-PAGE) of purified C.1086 proteins with molecular weight standard.
DOI: 10.17632/ghc3s2b7p3
title: An open source massively parallel solver for Richards equation: Mechanistic modelling of water fluxes at the watershed scale

description: Abstract In this paper we present a massively parallel open source solver for Richards equation, named the RichardsFOAM solver. This solver has been developed in the framework of the open source generalist computational fluid dynamics tool box OpenFOAM^®and is capable to deal with large scale problems in both space and time. The source code for RichardsFOAM may be downloaded from the CPC program library website. It exhibits good parallel performances (up to ∼90% parallel efficiency with 1024 process... Title of program: RichardsFOAM Catalogue Id: AEUF_v1_0 Nature of problem This software solves the non-linear three-dimensional transient Richards equation, which is a very popular model for water transfer in variably saturated porous media (e.g.: soils). It is designed to take advantage of the massively parallel computing performance of OpenFOAM®. The goal is to be able to model natural hydrosystems on large temporal and spatial scales. Versions of this program held in the CPC repository in Mendeley Data AEUF_v1_0; RichardsFOAM; 10.1016/j.cpc.2014.08.004 AEUF_v2_0; RichardsFoam2; 10.1016/j.cpc.2015.07.009 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/48k3hyvfn8
title: DESCAQ development

description: This excel file contains a sheet for each of the data in the development and validation of the DESCAQ. 
In the Spanish phase, we collected data from an item bank developed in previous studies and performed Rasch analysis to calibrate items. In the English phase, we administered to a big sample the DESCAQ item-bank as translated by the translation team, we performed Rasch analysis to calibrate items and used the resultant parameters to configurate a new computerized adaptive test. This test was administered twice within two weeks for calculating the test-retest repeatability.
DOI: 10.17632/wxzcc64642
title: Supplemental files - Dorsal hand and foot mycosis fungoides: Look beyond mycosis fungoides palmaris et plantaris

description: Supplemental files for "Dorsal hand and foot mycosis fungoides: Look beyond mycosis fungoides palmaris et plantaris"
DOI: 10.17632/5r93t69shz
title: Data for: Impact of portal vein embolization on patient's long-term survival and cancer recurrence : a prospective cohort study.

description: This optimized dataset will allow you to perform all the comparison we made between the NoPVE and PVE groups. Use Event=1 when performing COX models for OS and DSF. For any inquiries, please contact Alex Paré at alex.pare@usherbrooke.ca
DOI: 10.17632/8xv6fnxpv5
title: Literary Modernism and Animal Studies in Virginia Woolf's "To the Lighthouse"

description: Within the literary modernist movement, Virginia Woolf's "To the Lighthouse" is regarded as a foundational work that is notable for its inventive narrative tactics, complex stream-of-consciousness style, and deep psychological understanding. Woolf skillfully combines these components to produce a story that explores the depths of the human psyche and captures the complexity of perception and consciousness. The novel's style and structure deviate from conventional narrative techniques in order to capture the fractured essence of human experience and thought. In doing so, Woolf not only questions traditional narrative structures but also provides readers with a deep, engrossing investigation of the inner lives of her characters, turning "To the Lighthouse" into a modernist literary classic.