cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13177163.v7
title: Files for Building the Rust Expression Browser

description: This entry consists of a compressed tar archive containing all the file used to build the initial rust expression browser (www.rust-expression.com).<br>Initial code to provision the software for the browser is available at:https://github.com/JIC-CSB/expvip-ansible<br><br>Code to build the browser using the metadata in this entry is available at:https://github.com/SaundersLab/Rust_Expression_Browser<br>
DOI: 10.6084/m9.figshare.5124112.v1
title: Supplementary Material for: Fluoroquinolone Photodegradation Influences Specific Basophil Activation

description: Fluoroquinolones (FQs) are photoreactive drugs, but it is not known whether laboratory light exposure can influence the induction of photoproducts and modify in vitro test results. The basophil activation test (BAT) has proven to be useful for evaluating immunoglobulin E (IgE)-mediated hypersensitivity to FQs, with a higher percentage of positive responders with ciprofloxacin (CIP) than with moxifloxacin (MOX). We studied the effect of laboratory light on CIP and MOX degradation, and drug-protein conjugate formation, and its influence on the BAT for evaluating IgE-mediated hypersensitivity to FQs. The results showed an important decrease in fluorescence emission intensity under light compared to dark conditions for MOX, and that BAT positivity was lower in light (17.9%) than in dark (35.7%) conditions. No changes were found for CIP in either fluorescence emission intensity or BAT results (46.4% in both conditions). We can conclude that light exposure is a critical factor in BAT results when photolabile drugs like MOX are used. Therefore, light is important when interpreting in vitro results.
DOI: 10.6084/m9.figshare.3525356.v1
title: Appendix A. Likelihood surface plots and maximum-likelihood point estimates of Argos error distribution parameters.

description: Likelihood surface plots and maximum-likelihood point estimates of Argos error distribution parameters.
DOI: 10.17866/rd.salford.22495669.v1
title: Facial Emotion Detection Dataset

description: The Facial Emotion Detection Dataset is a collection of images of individuals with two different emotions - happy and sad. The dataset was captured using a mobile phone camera and contains photos taken from different angles and backgrounds.
<br>
The dataset contains a total of 637 photos with an additional dataset of 127 from previous work. Out of the total, 402 images are of happy faces, and 366 images are of sad faces. Each individual had a minimum of 10 images of both expressions.
<br>
The project faced challenges in terms of time constraints and people's constraints, which limited the number of individuals who participated. Despite the limitations, the dataset can be used for deep learning projects and real-time emotion detection models.
Future work can expand the dataset by capturing more images to improve the accuracy of the model. The dataset can also be used to create a custom object detection model to evaluate other types of emotional expressions.
<br>
DOI: 10.6084/m9.figshare.8126780.v2
title: kmer-1KG-genomes.txt

description: 1000 genomes kmer analyses
DOI: 10.17632/9cz3tdy4t9
title: Drivers of Bricolage Behaviour in Internationalising SMEs: The Role of Sensemaking and Institutions - Appendix

description: Includes the factor loadings, measurement model and validity analysis, and scale items for the scales used in the empirical analysis in this study.
DOI: 10.6084/m9.figshare.13567412.v3
title: Supplementary data and research materials for "Geopolitical conflicts, sanctions, and international knowledge flows: EU-Russia collaboration during the Ukraine crisis"

description: ZIP-File with study data, STATA replication codes, and supplementary research materials for: <br> "Geopolitical conflicts, sanctions, and international knowledge flows: EU-Russia collaboration during the Ukraine crisis" <br> by Teemu Makkonen and Timo Mitze (2023) <br> published in: <em>The World Economy</em>. <br> Contact: tmitze@sam.sdu.dk
DOI: 10.17632/n4hrm45cbz
title: ACL long time

description: Table including data of biomechanics gait investigation for patients long time after ACL surgery reconstruction.
DOI: 10.25573/serc.24794088.v3
title: Water Quality Data, Upper Chesapeake Bay, MarineGEO, Smithsonian Environmental Research Center

description: Water quality data collected on a YSI EXO2 multiparameter sonde at the MarineGEO Upper Chesapeake Bay observatory (Smithsonian Environmental Research Center [SERC], Edgewater, MD, USA). The sonde is located at the SERC dock alongside meteorological and water level instrumentation.The local time at this site is Eastern Standard Time (UTC-5). Note that timestamps in this dataset are reported as Coordinated Universal Time (UTC).Data at this site prior to April 2024 may be off by one hour (one hour later than expected) during United States Daylight Saving Time (March through November).The Figshare resource also contains quality control metadata to assist with interpretation and analysis. Review the "README.txt" file for more information.This dataset should be cited as follows:Benson, Sam; Rich, Roy; Westbrook, Elizabeth; Cheng, Selina; Tashjian, Allegra; Lonneman, Michael; Neale, Patrick (2025). Water Quality Data, Upper Chesapeake Bay, MarineGEO, Smithsonian Environmental Research Center. Smithsonian Environmental Research Center. Dataset. https://doi.org/10.25573/serc.24794088.v1Location: 38.886928, -76.540172
DOI: 10.6084/m9.figshare.21259287.v1
title: Urinary Bladder Cancer Images

description: The slides of urinary bladdr cancer tissues were stained with hematoxylin-eosin (HE) in standard histopathological procedures. Formalin-fixed and paraffin-embedded tissue sections were cut into 4 µm thick slices, and were stained using a Tissue-Tek DRS 2000E-D2 Slide Stainer (Sakura Finetek Japan) according to the manufacturer’s instructions. Using the AxioVision SE64Rel.4.9.1.1 (Carl Zeiss Meditec AG, Germany) software, images were captured with an Axio Imager Z.1 (Carl Zeiss Meditec AG, Germany) microscope equipped with an EC Plan-NEOFLUOAR 20x/0.5NA lens.
DOI: 10.17632/p6rcwf4p9c
title: Named Entity Recognition words Dataset (Uzbek language)

description: Data for publication in Data in Brief
DOI: 10.6084/m9.figshare.5125036.v1
title: Supplementary Material for: Global Epidemiology of Amyotrophic Lateral Sclerosis: A Systematic Review of the Published Literature

description: <b><i>Background:</i></b> Amyotrophic lateral sclerosis (ALS) is relatively rare, yet the economic and social burden is substantial. Having accurate incidence and prevalence estimates would facilitate efficient allocation of healthcare resources. <b><i>Objective:</i></b> To provide a comprehensive and critical review of the epidemiological literature on ALS. <b><i>Methods:</i></b> MEDLINE and EMBASE (1995-2011) databases of population-based studies on ALS incidence and prevalence reporting quantitative data were analyzed. Data extracted included study location and time, design and data sources, case ascertainment methods and incidence and/or prevalence rates. Medians and interquartile ranges (IQRs) were calculated, and ALS case estimates were derived using 2010 population estimates. <b><i>Results:</i></b> In all, 37 articles met the inclusion criteria. In Europe, the median incidence rate (/100,000 population) was 2.08 (IQR 1.47-2.43), corresponding to an estimated 15,355 (10,852-17,938) cases. Median prevalence (/100,000 population) was 5.40 (IQR 4.06-7.89), or 39,863 (29,971-58,244) prevalent cases. <b><i>Conclusions:</i></b> Disparity in rates among ALS incidence and prevalence studies may be due to differences in study design or true variations in population demographics such as age and geography, including environmental factors and genetic predisposition. Additional large-scale studies that use standardized case ascertainment methods are needed to more accurately assess the true global burden of ALS.
DOI: 10.6084/m9.figshare.23519631.v1
title: MIS data.csv

description: Dataset used for the development of the MIS model
DOI: 10.17632/fdcy7fcmf4
title: Data for: Climate-induced long-term variations in ecosystem structure and atmosphere-ocean-ecosystem processes in the Yellow Sea and East China Sea

description: It is the data used in our research, including catch data for the Yellow Sea and East China Sea Large Marine Ecosystems, local-scale environmental variables, large-scale climate indices and fishing effort.
DOI: 10.17632/xydw92cxyj
title: IIUC Scopus Publication Data

description: A comprehensive search of Scopus publication data from the inception until December 2022 was conducted on January 25, 2023. This exhaustive exploration aimed to capture the entirety of scholarly output within the specified timeframe. By leveraging Scopus, a reputable database renowned for its extensive coverage of scientific literature, researchers sought to acquire a holistic understanding of published research across various disciplines. This meticulous examination serves as a foundational step in academic inquiry, facilitating the identification of relevant literature, insights, and trends essential for advancing knowledge and contributing to the scholarly discourse.
DOI: 10.6084/m9.figshare.11917593.v1
title: Meta_data.zip

description: Data from Weixing Liu, Lin Jiang, Sen Yang, Zhou Wang, Rui Tian, Ziyang Peng, Yongliang Chen, Xingxu Zhang, Jialiang Kuang, Ning Ling, Shaopeng Wang; Lingli Liu. <b>Critical transition of soil bacterial diversity and composition triggered by nitrogen enrichment</b>
DOI: 10.6084/m9.figshare.3555420.v1
title: Appendix A. Descriptive details including methods for assembling database, tables that summarize the kinds of studies examined, and figures that present results from truncated analyses and analyses with Hedges’ d.

description: Descriptive details including methods for assembling database, tables that summarize the kinds of studies examined, and figures that present results from truncated analyses and analyses with Hedges’ d.
DOI: 10.15468/dl.tdjd9c
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Micropterix aruncella (Scopoli, 1763)"
 ]
}

 The dataset includes 518 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009349-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nv8rxdbw7k
title: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset and prediction model

description: Measurement of single Coffea canephora leaf spectro-polarimetric Bidirectional Reflectance Factor dataset of manuscript for Data in Brief Journal
DOI: 10.6084/m9.figshare.28715006.v1
title: DNA signaturing database for Scenedesmaceae

description: DNA signaturing database for Scenedesmaceae
DOI: 10.6084/m9.figshare.9771620.v1
title: Supplementary Material for: NIV NAVA versus Nasal CPAP in Premature Infants: A Randomized Clinical Trial

description: <b><i>Background:</i></b> Noninvasive ventilation is recommended for neonatal respiratory distress to avoid adverse effects of invasive ventilation. <b><i>Objective:</i></b> The aim of this study was to compare the feasibility of noninvasive neurally adjusted ventilatory assist (NIV NAVA) and continuous positive airway pressure (CPAP) in preterm newborn infants. <b><i>Methods:</i></b> Forty preterm infants (gestational age 28+0 to 36+6 weeks) requiring CPAP and supplemental oxygen (FiO<sub>2</sub> &gt;0.23) for respiratory distress at &lt;48 h of postnatal age were randomized to NIV NAVA or CPAP. The primary endpoint was the inspired oxygen concentration 12 h after study inclusion. Secondary endpoints were the duration of oxygen treatment, total duration of respiratory support, parenteral nutrition, blood gas values, patient comfort, need for invasive ventilation, and treatment complications. <b><i>Results:</i></b> The mean FiO<sub>2</sub> at the time of study inclusion was 0.29 in both groups. After 12 h of treatment, FiO<sub>2</sub> was 0.26 ± 0.07 and 0.26 ± 0.04 in the NIV NAVA and CPAP groups, respectively (difference 0.006, 95% CI –0.4 to 0.5), with no difference between the groups during the course of noninvasive ventilation (<i>p</i> = 0.80). Seven patients (35%) in the NIV NAVA group and 10 (50%) in the control group required intubation (difference 15%, 95% CI –15.5 to 4.3, <i>p</i> = 0.36). Time to intubation, gas exchange, vital parameters, pain scale, treatment complications, and neonatal outcome did not differ between the groups. <b><i>Conclusions:</i></b> In the present trial, NIV NAVA had no statistically significant effect on oxygen requirements or the need for invasive ventilation in preterm newborn infants.
DOI: 10.6084/m9.figshare.28470515.v2
title: Mitochondrial genes derived from transcriptomic and GenBank files of Tellinoidea

description: T.zip: Mitochondrial genes derived from transcriptomic data of Tellinoidea species acquired from NCBl SRA Database.GenBank files.zip: Uploaded NCBI genbank annotation files for species in the Tellinoidea
DOI: 10.6084/m9.figshare.5821506.v1
title: Supplementary Material for: Circulating Polyunsaturated Fatty Acids as Biomarkers for Dietary Intake across Subgroups: The CODAM and Hoorn Studies

description: <b><i>Aims:</i></b> To evaluate whether participant characteristics and way of expressing circulating fatty acids (FA) influence the strengths of associations between self-reported intake and circulating levels of linoleic acid (LA), alpha-linolenic acid (ALA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA). <b><i>Methods:</i></b> Cross-sectional analyses were performed in pooled data from the CODAM (<i>n</i> = 469) and Hoorn (<i>n</i> = 702) studies. Circulating FA were measured by gas liquid chromatography and expressed as proportions (% of total FA) and concentrations (µg/mL). Dietary intakes were calculated from a validated food frequency questionnaire. Effects of participant characteristics on associations between dietary and circulating FA were calculated using interaction analyses. <b><i>Results:</i></b> Standardized regression coefficients between dietary FA and proportions of circulating FA (% of total FA) were LA β = 0.28, ALA β = 0.13, EPA β = 0.34, and DHA β = 0.45. Body mass index (BMI), waist circumference, and presence of CVD influenced associations for LA; gender influenced LA, EPA, and DHA; alcohol intake influenced LA and DHA; and glucose tolerance status influenced ALA (<i>p</i> values interaction &lt;0.05). Coefficients for circulating FA as concentrations were LA β = 0.19, ALA β = 0.10, EPA β = 0.31, and DHA β = 0.41. <b><i>Conclusions:</i></b> This study suggests that characteristics such as BMI, alcohol intake, and expressing circulating FA as proportions or concentrations, influence associations between dietary and circulating FA.
DOI: 10.17632/y3xwr4t5dz
title: Data for: Dataset showing the abundance and distribution of benthic foraminifera in relation to marine sediment parameters from western Arabian Gulf

description: The dataset contains raw and standardized benthic foraminifera counts, measured water and sediment parameters collected through manual sediment sample picking, water quality multiprobe and coupled plasma optical emission spectroscopy measurements respectively. Appendix 1-1 documents the location coordinates for the sampled stations. Appendix 1-2 provides spatial representation of diversity indices that were calculated from raw foraminifera counts. Raw data elemental concentration are summarized in Appendix 1-3. The documented raw counts and standardized counts of each species picked are attached in Appendix 1-4 and Appendix 1-5 respectively. Variation in grain sizes among the sample station is presented in in Appendix 1-6. Appendix 1-7 documents water column physicochemical parameters.
DOI: 10.6084/m9.figshare.25033811.v1
title: Replication Data for: Causes and consequences of divorce in a long-lived socially monogamous bird

description: For more information, please read the README.txt fileABSTRACTIn socially monogamous species, sexual selection not only depends on initial mate choice but also mate switching. To date, studies lack assessment of differences between passive (widowhood) and active (divorce) mate switching, longer-term fitness consequences, and how age masks reproductive costs and benefits of divorce. We investigated causes and long-term consequences of divorce and their age-dependence using longitudinal data on Seychelles warblers (<i>Acrocephalus sechellensis</i>), and experimentally test for short-term effects of mate-switching. Young and old males, but not females, divorced most frequently. Divorce propensity declined with pair bond duration and reproductive success in both sexes, but mate switching did not result in short-term costs. Divorcees did not gain short- or long-term fitness benefits compared to non-divorcees. In fact, female early-life divorcees that lost their breeding position had lower survival than females that never divorced. Divorce is likely a strategy to escape poor-quality partnerships, but not all divorcees benefit from divorcing.
DOI: 10.6084/m9.figshare.27110542.v1
title: MEA recordings

description: 24-well MEA recordings from mouse cortical cultures. Detected spikes.
DOI: 10.17632/2p282nh3zy
title: Lisht Data

description: archival and skeletal data from the Lisht legacy collection
DOI: 10.6084/m9.figshare.13325375.v1
title: Supplementary Material for: Downregulation of miRNA-451a Promotes the Differentiation of CD4+ T Cells towards Th2 Cells by Upregulating ETS1 in Childhood Asthma

description: Children exposed to common aeroallergens may develop asthma that progresses into adulthood. Inflammation regulated by T helper 2 (Th2) cells, a specific subpopulation of CD4+ T lymphocytes, is involved in asthmatic injury. Herein, our microarray data indicated that microRNA-451a-5p (miRNA-451a) expression decreased by 4.6-fold and ETS proto-oncogene 1 (ETS1) increased by 2.2-fold in the peripheral blood lymphocytes isolated from asthmatic children (<i>n</i> = 4) as compared to control individuals (<i>n</i> = 4). The negative correlation between miRNA-451a and ETS1 was further validated in 40 CD4+ T cell samples (10 healthy vs. 30 asthmatic samples). In vitro, naïve CD4+ T cells isolated from control individuals were cultured under Th2 cell polarizing condition. miRNA-451a expression decreased while ETS1 increased in CD4+ T cells in the setting of Th2 cell polarization. Moreover, miRNA-451a knockdown enhanced Th2 cell polarization – cells positive for both GATA3 (GATA binding protein 3, a Th2-transcription factor) and CD4 increased, and the generation of Th2 cell cytokines, interleukin (IL)5 and IL13, increased. In contrast, miRNA-451a overexpression inhibited Th2 cell differentiation. Interestingly, dual-Luciferase assay proved ETS1 as a novel target of miRNA-451a. Moreover, enforced expression of ETS1 partially restored miRNA-451a-induced inhibition of IL5 and IL13, and increased the GATA3+CD4+ cell population. Collectively, our work demonstrates that downregulation of miRNA-451a upregulates ETS1 expression in CD4+ T cells, which may contribute to Th2 cell differentiation in pediatric asthma.
DOI: 10.17632/gf9svj4zfb
title: Radiocarbon Palaeolithic Europe database v24

description: We have collected the available data from literature and from other more restricted databases. We try to incorporate newly published chronometric dates collected from all kind of available publications. See list of journals inspected in downloadable file "inspected-journals.xls". The database, version 24 (first version was available in2002), contains now 12888 site forms, (most of them with their geographical coordinates), comprising 15500 radiometric data: Conv. 14C and AMS 14C (12024 items), TL (997 items), OSL (461 items), ESR, Th/U and AAR (2015 items) from the European (Russian Siberia included) Lower, Middle and Upper Palaeolithic. All 14C dates are conventional dates BP. 141 new sites are incorporated and 322 sites have a corrected or an updated content. For citation, please use: Vermeersch, P.M., 2018. Radiocarbon Palaeolithic Europe Database, Version 24. Available at: http://ees.kuleuven.be/geography/projects/14c-palaeolithic/index.html. The database uses Microsoft Access ©. After downloading, you can use the database with a procedure as described below. For those who have no access to Microsoft Access software, there is also an excel–file (Palaeolithic Europe Database v24 Oct 2018 extract.xls), with restricted content but with all dates. It can be directly downloaded from http://ees.kuleuven.be/geography/projects/14c-palaeolithic/index.html. The excel file is also available via academia.edu and researchgate.net (https://www.researchgate.net/project/Radiocarbon-Palaeolithic-Europe-Database)
DOI: 10.17632/vthkwx9hbj
title: Implementation of the SU(2) Hamiltonian symmetry for the DMRG algorithm

description: Abstract In the Density Matrix Renormalization Group (DMRG) algorithm (White, 1992, 1993) [1,2], Hamiltonian symmetries play an important rôle. Using symmetries, the matrix representation of the Hamiltonian can be blocked. Diagonalizing each matrix block is more efficient than diagonalizing the original matrix. This paper explains how the the DMRG++ code (Alvarez, 2009) [3] has been extended to handle the non-local SU(2) symmetry in a model independent way. Improvements in CPU times compared to runs w... Title of program: DMRG++ Catalogue Id: AEDJ_v2_0 Nature of problem Strongly correlated electrons systems, display a broad range of important phenomena, and their study is a major area of research in condensed matter physics. In this context, model Hamiltonians are used to simulate the relevant interactions of a given compound, and the relevant degrees of freedom. These studies rely on the use of tight-binding lattice models that consider electron localization, where states on one site can be labeled by spin and orbital degrees of freedom. The calculation of pro ... Versions of this program held in the CPC repository in Mendeley Data AEDJ_v1_0; DMRG++; 10.1016/j.cpc.2009.02.016 AEDJ_v2_0; DMRG++; 10.1016/j.cpc.2012.04.025 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/9y4pmp5xpm
title: DATASET FOR MICROCYSTIN REMOVAL BY MICROBIAL COMMUNITIES FROM A COASTAL LAGOON: INFLUENCE OF ABIOTIC FACTORS, BACTERIOPLANKTON COMPOSITION AND ESTIMATED FUNCTIONS

description: Toxic cyanobacterial blooms present a substantial risk to public health due to the production of secondary metabolites, notably microcystins (MCs). Microcystin-LR (MC-LR) is the most prevalent and toxic variant in freshwater. MCs resist conventional water treatment methods, persistently impacting water quality. This study focused on an oligohaline shallow lagoon historically affected by MC-producing cyanobacteria, aiming to identify bacteria capable of degrading MC and investigating the influence of environmental factors on this process. While isolated strains did not exhibit MC degradation, microbial assemblages directly sourced from lagoon water removed MC-LR within seven days at 25 ºC and pH 8.0. The associated bacterial community demonstrated an increased abundance of bacterial taxa assigned to Methylophilales, and also Rhodospirillales and Rhodocyclales to a lesser extent. However, elevated temperatures (45 ºC) and acidification (pH 5.0 and 3.0) hindered MC-LR removal, indicating that extreme environmental changes could contribute to prolonged MC persistence in the water column. This study highlights the importance of considering environmental conditions in order to develop strategies to mitigate cyanotoxin contamination in aquatic ecosystems. This Dataset includes all raw results presented in the original manuscript for sharing with the readers.