cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3596633_d4.v1
title: Additional file 1: of The influence of life history characteristics on flea (Siphonaptera) species distribution models

description: Calculation of coefficients of harmonic regression for climate variables and topography in R. Description of data: R script illustrating the production of the coefficients of harmonic regression for climate variables and topography. (R 3Â kb)
DOI: 10.6084/m9.figshare.c.3596633_d5.v1
title: Additional file 2: of The influence of life history characteristics on flea (Siphonaptera) species distribution models

description: Collinearity among the 19 final individual predictor variables. All final predictor variables had correlation values below 0.7 or aboveâ  0.7. Description of data: The table contains collinearity among final 19 predictor variables chosen for modelling. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d4.v1
title: Additional file 9: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S5. List of D. immitis genes that are significantly (qâ
DOI: 10.6084/m9.figshare.c.3596636_d5.v1
title: Additional file 18: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Number of reads from the BRS-Tupi and BH031 accessions that presented similarity to CMTA proteins. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d5.v1
title: Additional file 7: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S3. D. immitis tissue-associated Wolbachia transcript list based on hierarchical clustering. (XLSX 226 kb)
DOI: 10.6084/m9.figshare.c.3596636_d6.v1
title: Additional file 14: of Leaf transcriptome of two highly divergent genotypes of Urochloa humidicola (Poaceae), a tropical polyploid forage grass adapted to acidic soils and temporary flooding areas

description: Gene expression stability values (M) and coefficient of variance (CV) of the candidate reference genes. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3596639_d8.v1
title: Additional file 14: of Tissue-specific transcriptomics and proteomics of a filarial nematode and its Wolbachia endosymbiont

description: Table S8. Gene IDs, peptide spectral counts and protein descriptions for all 170 Wolbachia proteins detected by mass spectrometry in D. immitis tissues. (XLSX 56 kb)
DOI: 10.57702/3bzjxme5
title: Estimaci´on de carga muscular mediante im´agenes

description: The dataset is used to estimate the level of muscle load in a person's arm by analyzing images of the arm holding different weights.
DOI: 10.57702/ivm77r4i
title: Surface Light Field Fusion

description: Surface Light Field Fusion dataset for interactive scanning of highly reflective objects with a commodity RGBD sensor.
DOI: 10.57702/n4wmzesm
title: SST-2, Irony, IronyB, TREC6, and SNIPS

description: The dataset used in this paper is SST-2, Irony, IronyB, TREC6, and SNIPS.
DOI: 10.57702/gumc8ay5
title: Simulations

description: The dataset used in this paper is a sample of 1,000, 3,000, 5,000, and 10,000 observations.
DOI: 10.60656/c7e9b81ac70343e9
title: Custom collection of ice water content data from Bucharest, Cabauw, Chilbolton, Galați, Granada, and 11 other sites between 1 and 31 Jul 2023
DOI: 10.6084/m9.figshare.c.3596729_d2.v1
title: Additional file 2: of Dintor: functional annotation of genomic and proteomic data

description: Data files for Dintor use-cases one to three.
DOI: 10.6084/m9.figshare.c.3596753_d2.v1
title: Additional file 4: of Analysis of 5â   gene regions reveals extraordinary conservation of novel non-coding sequences in a wide range of animals

description: Standard Phylogibbs output for the RPLP2 CNE showing elicited motifs, their sequences, the organisms used and their approximate phylogenetic relationships to one another. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3596867_d2.v1
title: Additional file 4: Table S1. of Host specificity in a diverse Neotropical tick community: an assessment using quantitative network analysis and host phylogeny

description: Database of tick-host associations used for the analyses of this study. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3596864_d2.v1
title: Additional file 2: Table S2. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: Differentially expressed genes (DEGs) associated with bruchid resistance of mungbean. (XLS 67Â kb)
DOI: 10.6084/m9.figshare.c.3596864_d3.v1
title: Additional file 3: Table S3. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: DEGs involved in metabolic pathways. (XLS 31Â kb)
DOI: 10.6084/m9.figshare.c.3596864_d4.v1
title: Additional file 6: Table S6. of Genomic and transcriptomic comparison of nucleotide variations for insights into bruchid resistance of mungbean (Vigna radiata [L.] R. Wilczek)

description: Bruchid-resistanceâ  associated sequence-changed-protein genes (SCPs) of mungbean. (XLS 82Â kb)
DOI: 10.6084/m9.figshare.c.3596966_d3.v1
title: Additional file 8: of Spatiotemporal variation of mammalian protein complex stoichiometries

description: Table listing the targeted proteomics assays used for quantification of NuRD complex members. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3596972_d2.v1
title: Additional file 2: Table S2. of Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs

description: The model test for Phalaenopsis amabilis species complex based on the nrITS region using MEGA 6.0.
DOI: 10.6084/m9.figshare.c.3596987_d1.v1
title: Additional file 7: of Blood lipids influence DNA methylation in circulating cells

description: The HDL-C PS is nominally associated with confounder neutrophil counts. (CSV 202 bytes)
DOI: 10.6084/m9.figshare.c.3596966_d4.v1
title: Additional file 6: of Spatiotemporal variation of mammalian protein complex stoichiometries

description: Table reporting the summary of quantified complex members and their regulation. (XLSX 179 kb)
DOI: 10.6084/m9.figshare.c.3596972_d3.v1
title: Additional file 3: Table S3. of Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs

description: The model test for Phalaenopsis amabilis species complex based on the plastid noncoding region using MEGA 6.0.
DOI: 10.6084/m9.figshare.c.3596984_d2.v1
title: Additional file 3: Figures S2a-c. of Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A

description: Fay and Wu’s H calculated across chromosome 4 using a 30 kbp sliding window. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (blue) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. Figure S2b Fay and Wu’s H calculated across chromosome 4 using a 5 kbp sliding window. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (blue) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. Figure S2c Fay and Wu’s H calculated across chromosome 4 using a 1 kbp sliding window. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (blue) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. (ZIP 841 kb)
DOI: 10.6084/m9.figshare.c.3596987_d2.v1
title: Additional file 11: of Blood lipids influence DNA methylation in circulating cells

description: Effect of lipid levels on DNA methylation corrected for nearest PS SNP within 1Â Mb. Estimate is the percentage change in DNA methylation per standard deviation change in lipid levels. (CSV 289 bytes)
DOI: 10.6084/m9.figshare.c.3596984_d3.v1
title: Additional file 2: Figures S1a-c. of Lack of direct evidence for natural selection at the candidate thrifty gene locus, PPARGC1A

description: Tajima’s D calculated across chromosome 4 using a 30 kbp sliding window by population. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (blue) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. Figure S1b Tajima’s D calculated across chromosome 4 using a 5 kbp sliding window by population. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (purple) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. Figure S1c Tajima’s D calculated across chromosome 4 using a 1 kbp sliding window by population. Chromosome 4:22.7–24.9 Mbp is shown with chromosome mean (blue) and 2.5%, 97.5% quantiles (purple) from Table 4 marked. Location of PPARGC1A is marked in red. Rs8192678 is marked by a red dashed line. (ZIP 1473 kb)
DOI: 10.6084/m9.figshare.c.3596987_d3.v1
title: Additional file 6: of Blood lipids influence DNA methylation in circulating cells

description: Polygenic scores constructed from lipid GWAS-identified SNPs associate strongly with their respective lipid levels but explain only a small amount of their variance. (CSV 104 bytes)
DOI: 10.20363/zfmk-coll.dermaptera-2024-12
title: ZFMK Dermaptera collection

description: The Dermaptera collection at the Leibniz Institute for the Analysis of Biodiversity Change (LIB) - Museum Koenig Bonn contains large parts of the collection of Johann Klapperich as well as the collection of A. Schoop and the permanent loan of the Zoo Cologne
DOI: 10.6084/m9.figshare.c.3596966_d5.v1
title: Additional file 2: of Spatiotemporal variation of mammalian protein complex stoichiometries

description: Table listing the protein complex resource. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3597077_d1.v1
title: Additional file 2: of High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing

description: Sequence information of the mapped SNP markers. (XLSX 657Â kb)
DOI: 10.6084/m9.figshare.c.3597077_d2.v1
title: Additional file 1: of High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing

description: Total SLAFs. (XLSX 16699Â kb)
DOI: 10.6084/m9.figshare.c.3597077_d3.v1
title: Additional file 3: of High-density genetic map construction and gene mapping of pericarp color in wax gourd using specific-locus amplified fragment (SLAF) sequencing

description: Detailed SNP marker information for each of the twelve linkage groups. (XLSX 113Â kb)
DOI: 10.6084/m9.figshare.c.3597086_d1.v1
title: MOESM2 of Significant association and synergistic adverse prognostic effect of podocalyxin-like protein and epidermal growth factor receptor expression in colorectal cancer

description: Additional file 2. Comparison of EGFR protein expression in CRC assessed by two different antibodies in cohort 1.
DOI: 10.6084/m9.figshare.c.3597086_d2.v1
title: MOESM1 of Significant association and synergistic adverse prognostic effect of podocalyxin-like protein and epidermal growth factor receptor expression in colorectal cancer

description: Additional file 1. Patient and tumour characteristics in the three cohorts.
DOI: 10.6084/m9.figshare.c.3597203_d1.v1
title: Additional file 2: Table S3. of Evolution of the Tim17 protein family

description: The phylogenetic tree of Tim17 family proteins in Newick format. (TXT 301 kb)
DOI: 10.6084/m9.figshare.c.3597209_d1.v1
title: Additional file 4: Table S4. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: GO annotation counts for the assembled transcripts. Summary of retrieved GO annotations for de novo assembled, restructured transcripts. (XLS 263 kb)
DOI: 10.6084/m9.figshare.c.3597209_d2.v1
title: Additional file 2: Table S2. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: BLASTx hits of transcripts. BLASTx top hit results for de novo assembled contigs of restructured transcripts. (XLS 4120 kb)
DOI: 10.6084/m9.figshare.c.3597203_d3.v1
title: Additional file 1: Table S1. of Evolution of the Tim17 protein family

description: The list of sequences obtained by the Tim17 protein family-specific HHsearch in Uniprot database of reference proteomes. The columns A to E - taxonomic affiliation, the column F- sequence ID, the column F – sequence description, the column H - the affiliation to particular groups of Tim17 protein family (Nogroup indicates that the sequence could not be assigned to any defined subgroups), the column I- the amino acid sequence. (XLS 2637 kb)
DOI: 10.6084/m9.figshare.c.3597209_d3.v1
title: Additional file 9: Table S8. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: Enriched GO terms for DE transcripts clustered by expression patterns. Listing of GO terms enriched for k-means clustered expression patterns of DE transcripts with description, number transcripts, and p-value. (XLS 27 kb)
DOI: 10.6084/m9.figshare.c.3597221_d1.v1
title: Additional file 6: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

description: Calculation on the population genetic distance among the three species carrying A genome by resampling. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3597224_d1.v1
title: Additional file 1: Table S1. of Phylogenetic and comparative genomics of the family Leptotrichiaceae and introduction of a novel fingerprinting MLVA for Streptobacillus moniliformis

description: Analysis of clusters of orthologous groups (COGs) of the Leptotrichiaceae members used in this study. COGs were assessed as described in the Materials and Methods. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3597203_d4.v1
title: Additional file 4: Table S2. of Evolution of the Tim17 protein family

description: The overall distribution of Tim17 family protein in eukaryotes. (XLS 135 kb)
DOI: 10.6084/m9.figshare.c.3597209_d4.v1
title: Additional file 12: Table S11. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: Putative sRNA/target pairs identified from negatively correlated DE sRNAs and DE transcripts. Listing of sRNA/target pairs based on negative correlation of DE sRNA and DE transcript expression patterns that were identified using psRNATarget [58]. Stage transitions of DE, correlation coefficient, and transcript BLASTx top hits are listed. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3597221_d2.v1
title: Additional file 1: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

description: Information of DArT-seq markers and genotypes of the SY-PM genetic mapping population of B. juncea. (XLSX 6076Â kb)
DOI: 10.6084/m9.figshare.c.3597209_d5.v1
title: Additional file 10: Table S9. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: DE sRNAs in T1 and T2. Listing of identifiers of DE sRNA up- and downregulated in the stage transitions. (XLS 349 kb)
DOI: 10.6084/m9.figshare.c.3597209_d6.v1
title: Additional file 11: Table S10. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: Sequences of DE sRNAs and predicted miRNAs. Listing of all DE sRNAs as well as miRNAs with their sRNA identifier (XLS 1022 kb)
DOI: 10.6084/m9.figshare.c.3597221_d3.v1
title: Additional file 3: of Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes

description: The copies of ancestral blocks of Brassicaceae discriminated in Brassica species and Brassica subgenomes. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3597209_d7.v1
title: Additional file 8: Table S7. of Analysis of wheat microspore embryogenesis induction by transcriptome and small RNA sequencing using the highly responsive cultivar “Svilena”

description: Enriched GO terms for DE transcripts in the stage transitions. Listing of GO terms enriched for DE transcripts in stage transitions seperately for up- and downregulated expression patterns with term description, number of transcripts, and p-value. (XLS 35 kb)
DOI: 10.6084/m9.figshare.c.3597314_d1.v1
title: Additional file 2: of Modelling the effect of short-course multidrug-resistant tuberculosis treatment in Karakalpakstan, Uzbekistan

description: Model code for Matlab 2015b. (ZIP 10 kb)
DOI: 10.6084/m9.figshare.c.3597290_d4.v1
title: Additional file 4: of Combined clinical and genomic signatures for the prognosis of early stage non-small cell lung cancer based on gene copy number alterations

description: GO biological processes highly significantly enriched in the 513 preselected gene set for ADC. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3597308_d3.v1
title: MOESM4 of Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

description: Additional file 4. Triose phosphate transporters, accession numbers for sequences used in Fig.Â 9 and Additional file 1: Figure S2.
DOI: 10.6084/m9.figshare.c.3597290_d5.v1
title: Additional file 3: of Combined clinical and genomic signatures for the prognosis of early stage non-small cell lung cancer based on gene copy number alterations

description: Preselected 150 candidate genes for SCC. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3597308_d4.v1
title: MOESM3 of Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype

description: Additional file 3. Periplastid predictedÂ genes.
DOI: 10.6084/m9.figshare.c.3597290_d6.v1
title: Additional file 2: of Combined clinical and genomic signatures for the prognosis of early stage non-small cell lung cancer based on gene copy number alterations

description: Preselected 513 candidate genes for ADC. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.c.3597323_d4.v1
title: Additional file 7: Table S4. of Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F)

description: Predict secreted proteins based on the presence of a signal peptide (SP) or by non-classical secretory pathways (NC) (Scoring functionâ  &gt;â  0.5). Expression patterns using qualitative RT-PCR to proteins with SP [(a) Male expression exclusively; (b) Expression in both sexes and (c) Not amplified. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3597323_d5.v1
title: Additional file 3: Table S2. of Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F)

description: Primers used in RT-PCR and PCR conditions. PCR was performed with the following thermal conditions 60 s at 95 °C, 50 s at 94 °C, 30 s at 62 °C, 3 cycles /°C declining over a range at 1 °C intervals of 30 s, 72 s at 60 °C, 50 s at 95 °C, 30 s at 60 °C, 6 cycles /°C declining over a range at 0.5 °C intervals of 30 s, 50 s at 95 °C, 30 s at 56 °C, 30 cycles of 30 s and 60 s at 72 °C. Relative expression was not quantified. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3597323_d6.v1
title: Additional file 2: Table S1. of Combining RNA-seq and proteomic profiling to identify seminal fluid proteins in the migratory grasshopper Melanoplus sanguinipes (F)

description: Melanoplus sanguinipes Seminal fluid proteins identified by mass-spectrometry. Predicted function based on the annotation and BLAST2GO. (XLSX 84 kb)
DOI: 10.5281/zenodo.14454914
title: CPU and GPU Prices on Mainstream Cloud Computing Platforms

description: This is the price data that supports the cost estimation of data center providing flexibility, for the following paper "AI-focused HPC Data Centers Can Provide More Power Grid Flexibility and at Lower Cost", which is available at arxiv: https://arxiv.org/abs/2410.17435.Please cite our paper if you find this dataset and our paper helpful.
DOI: 10.5281/zenodo.14454915
title: CPU and GPU Prices on Mainstream Cloud Computing Platforms

description: This is the price data that supports the cost estimation of data center providing flexibility, for the following paper "AI-focused HPC Data Centers Can Provide More Power Grid Flexibility and at Lower Cost", which is available at arxiv: https://arxiv.org/abs/2410.17435.Please cite our paper if you find this dataset and our paper helpful.
DOI: 10.6084/m9.figshare.c.3597428_d3.v1
title: Additional file 7: Table S2. of Histone H4 acetylation and the epigenetic reader Brd4 are critical regulators of pluripotency in embryonic stem cells

description: The overlapping peaks of Brd4 with TFs in ESCs within 1Kbps. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3597449_d1.v1
title: Additional file 2: of An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK

description: R script to test QKidneyÂŽ. (R 7.88 kb)
DOI: 10.6084/m9.figshare.c.3597449_d3.v1
title: Additional file 1: of An external validation of models to predict the onset of chronic kidney disease using population-based electronic health records from Salford, UK

description: Read codes used to extract the data from the Salford Integrated Record. (CSV 518 kb)
DOI: 10.6084/m9.figshare.c.3597515_d15.v1
title: Additional file 18: of The transcriptome of metamorphosing flatfish

description: In-house database of candidate genes involved in thyroid gland development/thyroid hormone (TH) metabolism and signaling, including transcripts with a relevant role in TH synthesis, transport and activity. Protein name, Symbol, Accession number (no.), Organism and Biological role are shown. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3597548_d2.v1
title: Additional file 4: Table S2. of Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

description: Genomic position and corresponding gene IDs of the SSR and SNP markers in the Wm82.a2.v1 assembly, the SSR and SNP markers were from the BARCSOYSSR_1.0 database (Song et al. [30]). (XLS 8876 kb)
DOI: 10.6084/m9.figshare.c.3597566_d1.v1
title: Additional file 2: Figures S1, S2. of Analyzing video recorded support of postnatal transition in preterm infants following a c-section

description: The time point of first occurrence of an intervention for every LGA, VLGA and ELGA that the specific intervention was given. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3597563_d2.v1
title: MOESM4 of In silico search, characterization and validation of new EST-SSR markers in the genus Prunus

description: Additional file 4: Table S1. Description of SSR containing ESTs with significant matches in Prunus species, including accession numbers, repeat motif, primer sequences, product size, and annealing temperature. In addition, position and associated genes with respect to the reference genomes of mei and peach has been added. EST-SSR marked by asterisk has been previously described by Chen et al. [13].
DOI: 10.6084/m9.figshare.c.3597566_d2.v1
title: Additional file 4: Figure S3. of Analyzing video recorded support of postnatal transition in preterm infants following a c-section

description: Duration of every intubation attempt (successful and unsuccessful) according to the GA. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3597515_d19.v1
title: Additional file 19: of The transcriptome of metamorphosing flatfish

description: In-house database of candidate genes involved in TH signaling/metabolism identified in Xenopus laevis in previously published literature [84, 86, 87, 134]. Protein name, Symbol, Accession number (no.), Organism and References are shown. (XLSX 29 kb)