cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fugpg9
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "TaxonKey is Psorophora Robineau-Desvoidy, 1827",
 "Year 1992-2020"
 ]
}

 The dataset includes 44 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105645-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2x2scm
title: Occurrence Download

description: A dataset containing 855388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-98.04467 15.47207,-94.71328 15.47207,-94.71328 18.23385,-98.04467 18.23385,-98.04467 15.47207))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 855388 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0102821-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5px2q
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Chloroxylon swietenia (Roxb.) DC."
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028488-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fea56q
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Brazil",
 "TaxonKey is Limatus Theobald, 1901",
 "Year 1992-2020"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105640-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bw8ek5
title: Occurrence Download

description: A dataset containing 104676 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2022-02-20",
 "EventDate is less than or equal to 2022-03-22",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 104676 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186914-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xowxna
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Cinnamomum culilaban (L.) Kosterm."
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028489-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgd6xe
title: Occurrence Download

description: A dataset listing the 7688 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "HasCoordinate is true",
 "Year is greater than or equal to 1995",
 "Year is less than 2020",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 7688 records were derived from 231 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140958-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq9x2y
title: Occurrence Download

description: A dataset containing 2675 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Material citation",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Thalasseus sandvicensis (Latham, 1787)"
 ]
}

 The dataset includes 2675 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186931-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zks3dr
title: Occurrence Download

description: A dataset containing 99762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1960-1990",
 "Geometry POLYGON((-180 19,180 19,180 21,-180 21,-180 19))",
 "HasCoordinate is true",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 99762 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028490-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7m3s8
title: Occurrence Download

description: A dataset listing the 9116 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "HasCoordinate is true",
 "Year is less than 1996",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 9116 records were derived from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0140965-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h48b49
title: Occurrence Download

description: A dataset containing 424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Necturus beyeri Viosca, 1937)"
 ]
}

 The dataset includes 424 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003252-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/7zofww
title: Florida Keys Reef Visual Census 2008

description: In 1998, the Florida Fish and Wildlife Conservation Commission's (FWC) Fisheries Independent Monitoring (FIM) program began a long-term monitoring effort of key reef fish populations in the Florida Keys National Marine Sanctuary. This effort was aimed at evaluating the relative abundance, size structure, and habitat utilization of specific reef fish species that are targeted by commercial and recreational fisheries.
DOI: 10.15468/adis7b
title: Dry Tortugas Reef Visual Census 2012

description: In 1998, the Florida Fish and Wildlife Conservation Commission's (FWC) Fisheries Independent Monitoring (FIM) program began a long-term monitoring effort of key reef fish populations in the Florida Keys National Marine Sanctuary. This effort was aimed at evaluating the relative abundance, size structure, and habitat utilization of specific reef fish species that are targeted by commercial and recreational fisheries.
DOI: 10.15468/dfyb57
title: Florida Keys Reef Visual Census 2007

description: In 1998, the Florida Fish and Wildlife Conservation Commission's (FWC) Fisheries Independent Monitoring (FIM) program began a long-term monitoring effort of key reef fish populations in the Florida Keys National Marine Sanctuary. This effort was aimed at evaluating the relative abundance, size structure, and habitat utilization of specific reef fish species that are targeted by commercial and recreational fisheries.
DOI: 10.15468/6chrsz
title: Florida Keys Reef Visual Census 2010

description: In 1998, the Florida Fish and Wildlife Conservation Commission's (FWC) Fisheries Independent Monitoring (FIM) program began a long-term monitoring effort of key reef fish populations in the Florida Keys National Marine Sanctuary. This effort was aimed at evaluating the relative abundance, size structure, and habitat utilization of specific reef fish species that are targeted by commercial and recreational fisheries.
DOI: 10.15468/dl.mbhuc2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps namaquensis Power, 1926",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034133-250525065834625/datasets/export for details.
DOI: 10.15468/dl.apbuxj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056130-250827131500795/datasets/export for details.
DOI: 10.17026/dans-xza-fesk
title: Inventariserend veldonderzoek - verkennende fase Cannenburch te Vaassen, gemeente Epe (GD) Inventariserend veldonderzoek - verkennende fase Cannenburch te Vaassen, gemeente Epe (GD)

description: &lt;p&gt;Laagland Archeologie heeft in september 2023 een Inventariserend veldonderzoek - verkennende fase uitgevoerd aan de Cannenburch te Vaassen. Het onderzoek vond plaats in verband met de ruimtelijke procedure rondom de geplande herontwikkeling van een viertal terreinen.&lt;br&gt;Het onderzoek is uitgevoerd conform protocol SIKB KNA 4003.&lt;br&gt;Op basis van het eerder uitgevoerde bureauonderzoek geldt voor deelgebieden 1 en 2 een lage verwachting voor alle archeologische perioden; wel kunnen off-site resten worden verwacht. Voor deelgebied 3 geldt een lage tot middelhoge verwachting voor resten uit de periode Midden-Neolithicum tot en met de Nieuwe Tijd en voor deelgebied 4 geldt een hoge verwachting voor Paleolithicum tot en met de Nieuwe Tijd.&lt;br&gt;Het uitgevoerde verkennende booronderzoek heeft tot doel het verwachtingsmodel te toetsen en zo nodig aan te vullen. Hiertoe zijn verspreid over het toegankelijke deel van het plangebied verkennende boringen gezet. In dit stadium is verkennend booronderzoek de meest efficiënte onderzoekswijze om de archeologische potentie van het plangebied in kaart te brengen.&lt;br&gt;Uit het verkennend booronderzoek blijkt dat de bodem tot in de C-horizont is verstoord. De kans dat het gebied nog archeologische resten met een intacte archeologische context bevat wordt daarom laag geacht.&lt;br&gt;Op basis van de resultaten van het veldonderzoek wordt geadviseerd geen archeologisch vervolgonderzoek in het plangebied uit te voeren en het plangebied vrij te geven voor het aspect archeologie.&lt;br&gt;Dit advies is overgenomen door de bevoegde overheid, de gemeente Epe. De gemeente wordt hierin vertegenwoordigd door haar deskundige, H.G. Pape-Luijten, regio-archeoloog Stedendriehoek.&lt;br&gt;Mochten tijdens de werkzaamheden onverhoopt toch archeologische resten worden aangetroffen, of resten waarvan redelijkerwijze kan worden vermoed dat het om archeologische resten gaat, dan geldt op grond van de Erfgoedwet (art. 5.10) een meldingsplicht. Dit kan bij de Rijksdienst voor het Cultureel Erfgoed (RCE, www.cultureelerfgoed).&lt;/p&gt;
DOI: 10.5281/zenodo.17087464
title: A catalog of genes, genomes and species of the dog (Canis lupus familiaris) intestinal microbiota

description: Data sourcesThis dataset was constructed using metagenomic sequencing data from the bioproject PRJEB20308 from Coelho et al. 2018 (129 samples)
Metagenomic assemblyFirst, sequencing adapters removal and read trimming was performed with fastp. Reads mapped on the host genome (ROS_Cfam_1.0 GCF_014441545.1) with bowtie2 were removed with samtools. Finally, Metagenomic assembly was performed with metaSPAdes. Contigs of less than 1500 bp were removed.
MAGs recoveryMAGs were generated with COMEBin (multi-coverage mode) and MAGs quality was assessed with CheckM2. MAGs with completeness < 70% or contamination > 5% or N50 < 5Kb were discarded. Pairwise Average Nucleotide Identity (ANI) was computed for all recovered MAGs with fastANI and dereplication at species level (ANI cutoff = 95%).
Non-redundant gene catalogGenes were predicted on all contigs from metagenomic assemblies with Prodigal (parameters : -m -p meta). Genes were pooled and clustered with cd-hit-est (parameters -c 0.95 -aS 0.90 -G 0 -d 0 -M 0 -T 0) by choosing those from the longest contigs as representatives.
MSPs recoveryReads were aligned against the non-redundant gene catalog with the Meteor software suite to produce a raw gene abundance table (1,0M genes quantified in 129 samples). Then, co-abundant genes were binned in 234 Metagenomic Species Pan-genomes (MSPs, i.e. gene clusters that likely belong to the same microbial species) using MSPminer.
MAGs and MSPs taxonomic annotationDereplicated MAGs were annotated with GTDB-Tk based on GTDB r220. Then, MAGs taxonomic annotation was propagated to the corresponding MSPs.
Construction of the phylogenetic tree39 universal phylogenetic markers genes were extracted from the dereplicated MAGs with fetchMGs. Then, the markers were separately aligned with MUSCLE. The 40 alignments were merged and trimmed with trimAl (parameters: -automated1). Finally, the phylogenetic tree was computed with FastTreeMP (parameters: -gamma -pseudo -spr -mlacc 3 -slownni).
Mapping rate distribution across public cohortsWe generated mapping rate distribution plots using Meteor2 (default parameters), comparing performance between: PRJEB20308 (cohort used in catalogue assembly) and PRNJNA714112 (independent cohort not used in assembly).
DOI: 10.17026/dans-xzb-q3gm
title: Goes Elvis Presleylaan 12 Goes Elvis Presleylaan 12. Gemeente Goes. Inventariserend Veldonderzoek door middel van verkennende boringen

description: &lt;p&gt;De opdrachtgever heeft het voornemen om op een perceel aan de Elvis Presleylaan 12 te Goes een nieuw landhuis met omringend groen te realiseren. In het kader van de hiertoe benodigde omgevingsvergunning dient een archeologisch onderzoeksrapport te worden voorgelegd. Deze omgevingsvergunning werd echter op 26 mei 2022 reeds verstrekt met als voorwaarde het uitvoeren van het archeologisch (voor)onderzoek. Een archeologisch vooronderzoek dient, conform de provinciale richtlijnen, normaliter te bestaan uit een Archeologisch Bureauonderzoek en een Inventariserend Veldonderzoek door middel van boringen. Circa 20 jaar geleden werd echter een archeologisch bureauonderzoek uitgevoerd in het kader van de realisatie van bedrijventerrein de Poel II. Telefonisch overleg met de bevoegde overheid leert dat het uitvoeren van een archeologisch bureauonderzoek daarom niet noodzakelijk is maar dat kan worden volstaan met enkel een Inventariserend Veldonderzoek door middel van boringen. Op basis van de resultaten van dit onderzoek kan gesteld worden dat: - Voor het Laagpakket van Wormer de lage verwachting kan behouden blijven. In de boringen zijn wadafzettingen aangetroffen wat wijst op een natte omgeving die weinig geschikt was voor bewoning. De top is vastgesteld tussen 1,6 en 2,4 m -mv (3,09 en 3,71 m -NAP).&lt;br&gt;- De lage verwachting voor de onderzijde van het veen kan eveneens behouden blijven. De middelhoge verwachting voor de top van het veen blijft ter hoogte van de zuidoostelijke hoek van het plangebied (boringen 1, 5 en 9) behouden en kan worden bijgesteld naar een lage verwachting voor de rest van het plangebied. De intacte veraarde veentop werd hier aangetroffen tussen 0,95 en 1,20 m -mv (2,09 en 2,20 m -NAP). In de rest van het plangebied is het veen gemoerneerd. De bodem van de veenextractiekuilen/top niet intact veen werd aangetroffen tussen 1,55 en 2,15 m -mv (2,55 en 3,71 m -NAP).&lt;br&gt;- Voor het niveau van het Laagpakket van Walcheren kan de lage verwachting voor de vroege middeleeuwen, late middeleeuwen en Nieuwe tijd op basis van de resultaten van de boringen behouden blijven. De top van de veenextractiekuilen werd aangetroffen onmiddellijk onder de bouwvoor tussen 0,35 en 0,50 m -mv (1,46 en 1,96 m -NAP). Bovenop het veraarde intacte veen werden poelafzettingen van het laagpakket van Walcheren aangetroffen die veelal ongeschikt waren voor bewoning. De top van dit Laagpakket van Walcheren is vastgesteld onmiddellijk onder de bouwvoor tussen 0,30 en 0,45 m -mv (1,34-1,55 m -NAP). In geen van de boringen werd een oude cultuurlaag of andere archeologische indicatoren aangetroffen.&lt;/p&gt;
DOI: 10.15468/dl.bq3fr3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056131-250827131500795/datasets/export for details.
DOI: 10.15468/dl.j6vjbf
title: Occurrence Download

description: A dataset containing 2377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vulpes vulpes",
 "Country is Italy",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than 500",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 2377 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056133-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykkpn8
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Aerodramus maximus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056135-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.tqx2he
title: Sampling from commercial vessel routes can capture marine biodiversity distributions effectively

description: Records used in study (https://doi.org/10.1101/2022.06.23.497327)
DOI: 10.15468/dl.7knd2u
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Liolaemus kolengh"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056134-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.