cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cgk7mj
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Helarctos malayanus (Raffles, 1822)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027640-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vwkqg4
title: Occurrence Download

description: A dataset containing 1047 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "TaxonKey is Bombus sonorus Say, 1837"
 ]
}

 The dataset includes 1047 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0186862-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d12mz
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Namibia",
 "HasCoordinate is true",
 "TaxonKey is Welwitschiales",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027641-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h28zq6
title: Occurrence Download

description: A dataset containing 6283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pittosporum bicolor Hook.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6283 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047349-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fehgv6
title: Occurrence Download

description: A dataset containing 448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex gynandra Schwein.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 448 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163702-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yvv7sd
title: Occurrence Download

description: A dataset containing 737 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amsonia ciliata Walter"
 ]
}

 The dataset includes 737 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027644-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9qcyw
title: Occurrence Download

description: A dataset containing 1301126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achillea L."
 ]
}

 The dataset includes 1301126 records from 1603 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163695-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2108259166
title: Antigen recognition in type I diabetes

description: Type 1 diabetes (T1D) is the result of the autoimmune attack of autoantigen specific CD8+ and CD4+ T-cells against the pancreatic beta cells, resulting in a deficit of insulin secretion with unwanted metabolic consequences. The aim of this proposal is to investigate the structural differences between T-cell receptors (TCRs) involved in T1D, focusing on their interaction with the different autoantigen:MHC complexes. We want to compare the structural features of three diabetogenic TCRs, bearing alpha chains 17.4, 17.5 and 17.6, which recognize the IGRP206-214 peptide in the context of the MHC class I molecule H2-Kd. This will help us understand how the change of few amino acids can impact TCRs avidity and the progression of T1D. Additionally, we have identified the 4.1 TCR, a highly diabetogenic receptor that can act as an anti- or pro-diabetogenic molecule depending on the MHC class II molecule it interacts with. We want to explore these interactions with the goal of identifying structu
DOI: 10.5281/zenodo.15183488
title: Exposure and health risks of livestock air resistomes

description: Livestock farm air 16S sequencing data
DOI: 10.5281/zenodo.15183489
title: Exposure and health risks of livestock air resistomes

description: Livestock farm air 16S sequencing data
DOI: 10.17882/84947
title: SNPs genotypes of European flat oysters

description: In Europe several pilot projects for the restoration of the native European flat oyster, Ostrea edulis, recently begun and recommendations to preserve genetic diversity and to conduct monitoring protocols have been made. In particular, an initial step is to test for genetic differentiation against homogeneity among the oyster populations potentially involved in such programs. Therefore we conducted a genetic study to (1) confirm and precise the pattern of weak but significant genetic differentiation between Atlantic and Mediterranean populations already observed at this scale, (2) identify potential translocations that could be due to aquaculture practices, (3) investigate the case of the populations at the border of the geographical range that had been observed as related despite their geographic distance. The data set encompasses the genotypes of 617 flat oyster samples from 14 populations and for 203 SNP markers.
DOI: 10.17882/71543
title: Microsatellite genotyping data for the Pacific oyster Crassostrea gigas

description: The Pacific oyster, Crassostrea gigas, has been voluntarily introduced from Japan and British Columbia into Europe in the early 1970s, mainly to replace the Portuguese oyster in the French shellfish industry following a severe disease outbreak. The Pacific oyster is now the species on which the European shellfish farming mostly relies on but the species is also considered as being invasive, especially in Northern Europe. Its introduction and settlement in Europe could be inferred using several types of molecular markers. Microsatellite markers being very informative with up to several tens of alleles for some loci in this species, this dataset is gathering microsatellite data at several loci genotyped in thirty European cupped oyster populations from published or unpublished projects. The added value of this dataset relies on the calibration made between the several datasets on four common markers in order to get a robust database.
Method used and genotypes presentation: Thirty European cupped oyster populations were sampled for a total of 1373 individual oysters and genotyped with four microsatellite markers (see Sellos et al., 2003; Taris et al. 2005; Cornette and Lapègue, 2011; Rohfritsch et al., 2013). The genotypes are given with 6 digits, three by allele, corresponding to the estimated size of each allele. Intercalibration was performed manually between datasets in order to correctly assign allele sizes especially for alleles only separated by two base pairs. Missing data are coded with 0.
DOI: 10.17882/71545
title: SNP panels genotyping data for the genetic characterization of cupped oyster resources in Europe

description: The Pacific oyster, Crassostrea gigas, has been voluntarily introduced from Japan and British Columbia into Europe in the early 1970s, mainly to replace the Portuguese oyster, Crassostrea angulata, in the French shellfish industry following a severe disease outbreak. Since then, the two species are in contact in southern Europe and therefore have the potential to exchange genes in a new environment. Whether C. gigas and C. angulata truly represent biological species, semi-isolated species of populations of the same species has been largely discussed. This has been recently clarified by a genome-wide approach providing empirical evidence for highly heterogeneous divergence patterns across the genome, attributed to reduced introgression in low-recombining regions since secondary contact. Up to now only one mitochondrial and one nuclear marker have been used to differentiate C. gigas and C. angulata. Here, we selected a subset of ancestry informative makers from existing genomic resources in order to (1) easily differentiate C. gigas and C. angulata, and (2) describe the genetic diversity and structure of the cupped oyster with a particular focus on French Atlantic coasts. In this context several datasets were produced using 15 to 80 SNP markers.
DOI: 10.17882/92892
title: Current profiles at Camarinal Sill (Strait of Gibraltar) | Jun-Sep 2013

description: 3D current profiles collected at the Camarinal Sill (Strait of Gibraltar), by the Physical Oceanography Group of the University of Málaga (Spain). The current profiler is a Nortek Continental (190 kHz) embedded in a subsurface buoy, deployed 11m above the bottom, in uplooking configuration. The ADCP has been configured with 6m bins thickness and 4min sampling interval. Dataset contains information on the two horizontal and the vertical components of current speed, and the attitude and pressure sensors.
DOI: 10.15468/dl.35sjzp
title: Occurrence Download

description: A dataset containing 98964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))",
 "Depth is greater than or equal to 0m",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Cheloniidae",
 "CoordinateUncertaintyInMeters is less than 1e+05"
 ]
}

 The dataset includes 98964 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023292-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15072751
title: Table of Authors, Title, Year, Source title, Topic Distribution and Findings using LDA
DOI: 10.5281/zenodo.15072752
title: Table of Authors, Title, Year, Source title, Topic Distribution and Findings using LDA
DOI: 10.15468/dl.5tf68s
title: Occurrence Download

description: A dataset containing 98964 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-180 -90, 180 -90, 180 90, -180 90, -180 -90))",
 "Depth is greater than or equal to 0m",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "TaxonKey is Cheloniidae",
 "CoordinateUncertaintyInMeters is less than 1e+05"
 ]
}

 The dataset includes 98964 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023293-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5gk7p
title: Occurrence Download

description: A dataset containing 310676 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Ononis spinosa L.)"
 ]
}

 The dataset includes 310676 records from 1817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023289-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgktfz
title: Occurrence Download

description: A dataset containing 747 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meteorus pulchricornis (Wesmael, 1835)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 747 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003697-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fwmsht
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bradysia iridipennis (Zetterstedt, 1838)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 316 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003698-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/28466
title: Chandra X-ray Observatory ObsId 28466

description: AO-25 Calibration Observations of A1795
DOI: 10.25574/29201
title: Chandra X-ray Observatory ObsId 29201

description: Constraining the X-ray Features of the Double Radio Relic Cluster ZWCL1856+6616 with High-Resolution Chandra Observation
DOI: 10.15468/dl.qq9sk5
title: Occurrence Download

description: A dataset containing 7695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Felidae",
 "VerbatimScientificName is one of (Lynx rufus, Puma concolor, Panthera onca, Leopardus pardalis, Herpailurus yagouaroundi)"
 ]
}

 The dataset includes 7695 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004803-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/29459
title: Chandra X-ray Observatory ObsId 29459

description: Searching for Pulsating Neutron Stars Inside the Globular Cluster M28
DOI: 10.15468/dl.edmzsx
title: Occurrence Download

description: A dataset containing 723 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontopithecus rosalia"
 ]
}

 The dataset includes 723 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061223-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nr2su
title: Occurrence Download

description: A dataset containing 27061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ludwigia peploides)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27061 records from 681 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061222-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3669919_d9.v1
title: Additional file 6: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Patient metadata for longitudinal cohort (progesterone treatment).
DOI: 10.6084/m9.figshare.c.3669919_d9
title: Additional file 6: of The interaction between vaginal microbiota, cervical length, and vaginal progesterone treatment for preterm birth risk

description: Patient metadata for longitudinal cohort (progesterone treatment).
DOI: 10.6084/m9.figshare.c.3669955_d1.v1
title: Additional file 2: of Emergency obstetric and neonatal care availability, use, and quality: a cross-sectional study in the city of Lubumbashi, Democratic Republic of the Congo, 2011

description: Data collection tool. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.c.3669955_d1
title: Additional file 2: of Emergency obstetric and neonatal care availability, use, and quality: a cross-sectional study in the city of Lubumbashi, Democratic Republic of the Congo, 2011

description: Data collection tool. (ZIP 106 kb)
DOI: 10.6084/m9.figshare.c.3669940_d4.v1
title: Additional file 3: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: This file contains the copepod nucleotide sequences in FASTA format. (TXT 207 kb)
DOI: 10.6084/m9.figshare.c.3669955_d2.v1
title: Additional file 1: of Emergency obstetric and neonatal care availability, use, and quality: a cross-sectional study in the city of Lubumbashi, Democratic Republic of the Congo, 2011

description: Statistics on deliveries and maternal complications in 2010 in the surveyed health care facilities of Lubumbashi. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3669925_d11.v1
title: MOESM10 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 10: Table S4. Gene expression profiling and differential expression analysis of Δ2hgt and Δ2hgt;Δcre-1 vs. the WT or Δcre-1 grown on Avicel for the indicated times.
DOI: 10.6084/m9.figshare.c.3669940_d4
title: Additional file 3: of Phylogenomic analysis of Copepoda (Arthropoda, Crustacea) reveals unexpected similarities with earlier proposed morphological phylogenies

description: This file contains the copepod nucleotide sequences in FASTA format. (TXT 207 kb)
DOI: 10.6084/m9.figshare.c.3669925_d11
title: MOESM10 of Identification and characterization of the glucose dual-affinity transport system in Neurospora crassa: pleiotropic roles in nutrient transport, signaling, and carbon catabolite repression

description: Additional file 10: Table S4. Gene expression profiling and differential expression analysis of Δ2hgt and Δ2hgt;Δcre-1 vs. the WT or Δcre-1 grown on Avicel for the indicated times.
DOI: 10.6084/m9.figshare.c.3669955_d2
title: Additional file 1: of Emergency obstetric and neonatal care availability, use, and quality: a cross-sectional study in the city of Lubumbashi, Democratic Republic of the Congo, 2011

description: Statistics on deliveries and maternal complications in 2010 in the surveyed health care facilities of Lubumbashi. (XLSX 23 kb)
DOI: 10.17882/103947
title: Daily gridded Sea Level Anomalies from satellite altimetry using Spatio Temporal Window Kriging

description: The datasets contain Sea Level Anomalies gridded using Spatial-Temporal Window (+/-5 days) Kriging in California and the Southwestern Atlantic Continental Shelf in 2018 on a 1/4° grid. Input data for the gridding are unfiltered CMEMS along-track (L3) Sea Level Anomalies. 
The resulting grid demonstrated in the connected study (submitted to Advances in Space Research in December 2024) improved correlation with in-situ tide gauges, increasing by 10.7% in California and 17.5% in the SWACS region while reducing the Root Mean Square Deviation by 12.7% and 13.8%, respectively. We also reported a notable improvement (from 58 to 34 days) in terms of effective temporal resolution estimated against independent in-situ data, while spatial effective resolution compared to independent along-track data is equal to CMEMS Sea Level Anomalies in the study region of California.
DOI: 10.6084/m9.figshare.c.3669979_d12.v1
title: Additional file 8: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: Differential expressed genes (DEGs) between the three GTB/ST8 and the three GTS/ST398 strains. GTS/ST398 (1_2_3)_all CDS, GTB/ST8 (1_2_3)_all CDS, log2FoldChange, padj, protein and function class description were reported for each locus tag. In bold gene related to defense mechanism in italic gene validate by Real Time PCR experiment. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3669979_d12
title: Additional file 8: of Genomic and transcriptomic comparison between Staphylococcus aureus strains associated with high and low within herd prevalence of intra-mammary infection

description: Differential expressed genes (DEGs) between the three GTB/ST8 and the three GTS/ST398 strains. GTS/ST398 (1_2_3)_all CDS, GTB/ST8 (1_2_3)_all CDS, log2FoldChange, padj, protein and function class description were reported for each locus tag. In bold gene related to defense mechanism in italic gene validate by Real Time PCR experiment. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3670009_d6.v1
title: Additional file 3: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: This file contains the list of dead end reactions generated by the study, not including exchange reactions. This means all reactions which include a metabolite that cannot be otherwise resolved (through reaction to another compound) is included. Dead ends are ignorant to photoautotroph or diazotroph because of the similar genetic background. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3670009_d6
title: Additional file 3: of The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum

description: This file contains the list of dead end reactions generated by the study, not including exchange reactions. This means all reactions which include a metabolite that cannot be otherwise resolved (through reaction to another compound) is included. Dead ends are ignorant to photoautotroph or diazotroph because of the similar genetic background. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3671092_d1.v1
title: Additional file 4: of QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

description: Table S3. List of the 369 markers screened for polymorphism in the CO441 and CO354 parents and their use in map construction and QTL analysis. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3671092_d1
title: Additional file 4: of QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

description: Table S3. List of the 369 markers screened for polymorphism in the CO441 and CO354 parents and their use in map construction and QTL analysis. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3671086_d2
title: Additional file 7: Table S6. of Tissue resolved, gene structure refined equine transcriptome

description: Panther GO biological process annotation of the uniquely present transcripts in the embryo, skin, muscle, retina and CNS. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3671086_d2.v1
title: Additional file 7: Table S6. of Tissue resolved, gene structure refined equine transcriptome

description: Panther GO biological process annotation of the uniquely present transcripts in the embryo, skin, muscle, retina and CNS. (XLSX 64Â kb)
DOI: 10.6084/m9.figshare.c.3671092_d5.v1
title: Additional file 2: of QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

description: Table S1. Parent (CO441 and CO354) and F3 population mean values (Âą standard deviation, SD), F3 population range, median and mean-ranks for Fusarium ear rot severity (FER), fumonisin B1 (FB1) contamination and days to silking (DTS). Data are referred to early sowing (A) and late sowing (B) in 2011 and 2012, with side-needle (F) and toothpick (T) inoculation methods. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3671092_d6.v1
title: Additional file 7: of QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize

description: Table S5. List of candidate genes for Fusarium verticillioides resistance in the 1-LOD and 2-LOD confidence interval in the genomic regions containing QTLs for FER and FB1 contamination. (XLSX 100Â kb)