cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/2vxv7-2j355
title: sporulating MJ007 349

description: MJ007 349
description: <strong>Tilt Series Date:</strong> 2009-09-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> JFG349, ponA null, SpoIIIE73-11-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation medium</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-27-23/rawdata/</p>09sep27a_et-pos3_021.mrc,  Tilt Series (Pixel Size 0.95 nm), 981.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell21_full.rec,  Reconstruction (Pixel Size 1.9 nm), 822.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-09-27-23/3dimage_25860/cell21_full.rec"
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DOI: 10.22002/ekr8k-zms60
title: Vibrio cholerae

description: 2011_05_24_
description: <strong>Tilt Series Date:</strong> 2011-05-24</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> 2740-80</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> Mekalanos</p>
  mpa2011-05-24-5_slicer7260.jpg: filament mpa2011-05-24-5_slicer7396.jpg: unknown parallel filaments
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-05-24-5/rawdata/</p>2011_05_24_7.mrc,  Tilt Series (Pixel Size 0.0 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-05-24-5/rawdata/2011_05_24_7.mrc"
        > <i class="download icon"></i> Download </a></p>

        2011_05_24_7_full.rec,  Reconstruction (Pixel Size 0.0 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2011-05-24-5/3dimage_34848/2011_05_24_7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/refd8-h1q74
title: M259Q

description: E. coli mutant locked in the CheA activating state. Penicillin treated
description: <strong>Tilt Series Date:</strong> 2010-11-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -25.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD, CTF corrected</p>
<strong>Collaborators and Roles:</strong> John Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium (30 degrees), lysed with penicillin 1 hour</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-11-23-14/rawdata/</p>10nov23c_M259Q_020.st,  Tilt Series (Pixel Size 0.0 nm), 1.0 GB  
        
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        10nov23c_M259Q_020.rec,  Reconstruction (Pixel Size 0.0 nm), 2.2 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/nvthgwbpgr
title: Student Flows Across Regions and Settlements in Kazakhstan, 2020–2024: A Comprehensive Dataset

description: The dataset contains comprehensive data on internal student mobility between settlements and regions in Kazakhstan from the year 2020 through to year 2024. It contains yearly totals of transferring students, broken down by origin and destination sites, both at the regional and settlement levels. The data was derived from the Kazakhstan National Education Database and represents official administrative counts for transferring schools. It is provided to help facilitate research on educational mobility, educational inequality, urbanization, and school planning and forecasting. 

-This dataset consists of six individual tables derived from aggregated student migration data from Kazakhstan for the period from 2020 to 2024. The tables are in .csv form and can be found in the 'Dataset/data' folder.
-There is a detailed variable description in the provided 'Dataset/data/Codebook.xlsx' that explains every field utilized in the dataset.
-Each table is also accompanied by a related visualisation (such as bar charts, maps, line graphs) that presents main patterns and insights. The visualisations appear in the 'Dataset/data/visualizations' folder and they correspond to every table by figure number for easy reference.
-The Dataset/code folder contains the Python code used to process and analyze the raw data from the National Education Database (NEDB), along with a README.txt file that provides a step-by-step explanation of the methodology.
DOI: 10.15468/dl.pq3d7z
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus monticola",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 38 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047109-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/nvthgwbpgr.2
title: Student Flows Across Regions and Settlements in Kazakhstan, 2020–2024: A Comprehensive Dataset

description: The dataset contains comprehensive data on internal student mobility between settlements and regions in Kazakhstan from the year 2020 through to year 2024. It contains yearly totals of transferring students, broken down by origin and destination sites, both at the regional and settlement levels. The data was derived from the Kazakhstan National Education Database and represents official administrative counts for transferring schools. It is provided to help facilitate research on educational mobility, educational inequality, urbanization, and school planning and forecasting. 

-This dataset consists of six individual tables derived from aggregated student migration data from Kazakhstan for the period from 2020 to 2024. The tables are in .csv form and can be found in the 'Dataset/data' folder.
-There is a detailed variable description in the provided 'Dataset/data/Codebook.xlsx' that explains every field utilized in the dataset.
-Each table is also accompanied by a related visualisation (such as bar charts, maps, line graphs) that presents main patterns and insights. The visualisations appear in the 'Dataset/data/visualizations' folder and they correspond to every table by figure number for easy reference.
-The Dataset/code folder contains the Python code used to process and analyze the raw data from the National Education Database (NEDB), along with a README.txt file that provides a step-by-step explanation of the methodology.
DOI: 10.15468/dl.c2dt4z
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lagopus muta",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 37 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047107-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/yg8r8-qtj66
title: HUVECs 24H PI VSVGpNL4GFP

description: caulobacter cytoskeleton search, helium, ftsZ
description: <strong>Tilt Series Date:</strong> 2011-08-14</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Virus from Irvin Chen UCLA</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infected VSVG pNL4GFP</p>
<strong>Sample Preparation:</strong> manual blot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-14-1/rawdata/</p>11aug14_0001.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-14-1/rawdata/11aug14_0001.st"
        > <i class="download icon"></i> Download </a></p>

        11aug14_0001_full.rec,  Reconstruction (Pixel Size 2.0 nm), 491.4 MB  
        
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DOI: 10.22002/adhbt-yq559
title: E.coli "strain11" A413T CheAoff

description: E.coli methylation site mutant locked in a CheA inactivating state
description: <strong>Tilt Series Date:</strong> 2011-08-18</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: °, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> mutant from John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown at 30C in TB to log phase, then treated with penicillin for one hour </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2011-08-18-34/rawdata/</p>Ecolistrain11_2_081811_0017.st,  Tilt Series (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2011-08-18-34/rawdata/Ecolistrain11_2_081811_0017.st"
        > <i class="download icon"></i> Download </a></p>

        Ecolistrain11_2_081811_0017.rec,  Reconstruction (Pixel Size 0.0 nm), 1.9 GB  
        
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DOI: 10.22002/sdk58-yn976
title: Acetonema longum

description: SpoIVA knockout attempt in A. longum Round1
description: <strong>Tilt Series Date:</strong> 2011-11-01</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-15/3dimage_25286/</p>spo4ako20004_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.5 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-15/3dimage_25286/spo4ako20004_full.rec"
        > <i class="download icon"></i> Download </a></p>

        spo4ako20004.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-11-01-15/rawdata/spo4ako20004.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/k2368g76f2
title: data-environment

description: data
DOI: 10.22002/vm254-jyf96
title: M222R chemoreceptor mutant

description: M222R HAMP mutant locked in 'CHeA inactivating state'
description: <strong>Tilt Series Date:</strong> 2010-03-19</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> John Parkinson </p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium, induced with salycilate (0.6 µM) for three hours, then penicillin treated for one hour </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-19-14/rawdata/</p>10mar19a_EcoliM222K_014.st,  Tilt Series (Pixel Size 0.0 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10mar19a_EcoliM222K_014.rec,  Reconstruction (Pixel Size 0.0 nm), 481.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/k2368g76f2.1
title: data-environment

description: data
DOI: 10.22002/pdc43-42j66
title: L256T chemotaxis mutant

description: L256T HAMP mutant locked in an 'CheA activating state'
description: <strong>Tilt Series Date:</strong> 2010-03-18</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> John Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB media with Chloramphenicol, induced with 0.6µM salicylate for 3 hours, penicillin treated for 1 hour</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-03-18-15/rawdata/</p>10mar18a_EcoliL256T_025.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10mar18a_EcoliL256T_025.rec,  Reconstruction (Pixel Size 0.632 nm), 188.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fnx16-dqv31
title: Cos7_pNL_DN

description: Cos7 cells transfected with pNLGFP provirus construct
description: <strong>Tilt Series Date:</strong> 2012-10-05</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: None μm,  magnification: 21500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSFTomo</p>
<strong>Collaborators and Roles:</strong> pNLGFP construct provided by Irvin Chen, UCLA</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-10-05-33/rawdata/</p>12oct05_129_1_Cos7_pNL_DN_AT1BT1_0044.mrc,  Tilt Series (Pixel Size 0.49 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        12oct05_129_1_Cos7_pNL_DN_AT1BT1_0044_full.rec,  Reconstruction (Pixel Size 1.96 nm), 530.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.m6snu5
title: Occurrence Download

description: A dataset containing 874319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombus",
 "Year 2000-2024"
 ]
}

 The dataset includes 874319 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047052-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e23vpj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus monticola",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047108-250811113504898/datasets/export for details.
DOI: 10.22002/c0482-h0929
title: Ruminococcus flavefaciens

description: cellulosome
description: <strong>Tilt Series Date:</strong> 2013-07-31</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Ruminococcus flavefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth on cellulose</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-31-12/3dimage_29428/</p>rflav20007_part121_13.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        rflav20007.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-31-12/rawdata/rflav20007.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.6k45gf
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caamembeca autranii"
 ]
}

 The dataset includes 54 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047110-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/mc1cg-pag17
title: HIV capsid

description: B grid
description: <strong>Tilt Series Date:</strong> 2013-11-06</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> HIV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Wes Sundquist</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2013-11-06-7/rawdata/</p>hiv_capsid_b10016.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        hiv_capsid_b10016_part121_66.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>