cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17491526
title: Proteomic and functional annotation datasets supporting: Deep learning-assisted proteomic dissection reveals sex-specific and shared mechanisms in Populus deltoides under waterlogging stress and subsequent recovery

description: <p>This dataset contains the complete proteomic and functional annotation data supporting the publication <i>“Deep learning-assisted proteomic dissection reveals sex-specific and shared mechanisms in <i>Populus deltoides</i> under waterlogging stress and subsequent recovery.”</i> The data include differential expression analyses, Gene Ontology (GO) enrichment, Cluster of Orthologous Groups (COG) classification, and comparative Venn/UpSet plots for male and female <i>P. deltoides</i> under control, waterlogging, and recovery conditions.</p>

<p>The dataset provides an integrative resource for exploring sex-dimorphic proteomic responses and functional pathways in <i>P. deltoides</i>. It is suitable for meta-analyses, comparative studies, and benchmarking of stress-responsive proteomes in perennial tree species.</p>

<p><b>Contents:</b></p><ul><li><b>DEPs and Annotations.xlsx</b> — Complete list of quantified and differentially expressed proteins with functional annotations (accessions, fold-change, p-values, GO, KEGG terms).</li><li><b>Downregulated_proteins_Venn_UpSet.xlsx</b> — Shared and unique downregulated proteins across male and female comparisons.</li><li><b>Upregulated_proteins_Venn_UpSet.xlsx</b> — Shared and unique upregulated proteins across comparisons.</li><li><b>Gene_Ontology_terms_With_zscores.xlsx</b> — Enriched GO terms (Biological Process, Molecular Function, Cellular Component) with corresponding z-scores and FDR values.</li><li><b>MWvsFW_Go_term.xlsx</b> — GO enrichment results for male versus female plants under waterlogging stress.</li><li><b>MWRvsFWR_Go_term.xlsx</b> — GO enrichment results for male versus female plants during recovery following waterlogging.</li><li><b>MCvsFC_Go_term.xlsx</b> — Baseline GO term comparison between male and female plants under control conditions.</li><li><b>Proteins_COG_Analysis.xlsx</b> — COG functional classification of identified proteins across treatments.</li></ul>

<p>All analyses were performed using R (v4.5.1) and Python (v3.12) pipelines described in the manuscript and supplementary methods. The dataset ensures transparency, reproducibility, and accessibility of proteomic and computational analyses in tree stress physiology and is fully archived in Zenodo.</p>
DOI: 10.5281/zenodo.17491527
title: Proteomic and functional annotation datasets supporting: Deep learning-assisted proteomic dissection reveals sex-specific and shared mechanisms in Populus deltoides under waterlogging stress and subsequent recovery

description: <p>This dataset contains the complete proteomic and functional annotation data supporting the publication <i>“Deep learning-assisted proteomic dissection reveals sex-specific and shared mechanisms in <i>Populus deltoides</i> under waterlogging stress and subsequent recovery.”</i> The data include differential expression analyses, Gene Ontology (GO) enrichment, Cluster of Orthologous Groups (COG) classification, and comparative Venn/UpSet plots for male and female <i>P. deltoides</i> under control, waterlogging, and recovery conditions.</p>

<p>The dataset provides an integrative resource for exploring sex-dimorphic proteomic responses and functional pathways in <i>P. deltoides</i>. It is suitable for meta-analyses, comparative studies, and benchmarking of stress-responsive proteomes in perennial tree species.</p>

<p><b>Contents:</b></p><ul><li><b>DEPs and Annotations.xlsx</b> — Complete list of quantified and differentially expressed proteins with functional annotations (accessions, fold-change, p-values, GO, KEGG terms).</li><li><b>Downregulated_proteins_Venn_UpSet.xlsx</b> — Shared and unique downregulated proteins across male and female comparisons.</li><li><b>Upregulated_proteins_Venn_UpSet.xlsx</b> — Shared and unique upregulated proteins across comparisons.</li><li><b>Gene_Ontology_terms_With_zscores.xlsx</b> — Enriched GO terms (Biological Process, Molecular Function, Cellular Component) with corresponding z-scores and FDR values.</li><li><b>MWvsFW_Go_term.xlsx</b> — GO enrichment results for male versus female plants under waterlogging stress.</li><li><b>MWRvsFWR_Go_term.xlsx</b> — GO enrichment results for male versus female plants during recovery following waterlogging.</li><li><b>MCvsFC_Go_term.xlsx</b> — Baseline GO term comparison between male and female plants under control conditions.</li><li><b>Proteins_COG_Analysis.xlsx</b> — COG functional classification of identified proteins across treatments.</li></ul>

<p>All analyses were performed using R (v4.5.1) and Python (v3.12) pipelines described in the manuscript and supplementary methods. The dataset ensures transparency, reproducibility, and accessibility of proteomic and computational analyses in tree stress physiology and is fully archived in Zenodo.</p>
DOI: 10.60712/si-id350671.1
title: StrainInfo SI-ID 350671.1

description: StrainInfo dataset 350671 about a strain of Vermamoeba vermiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350672.1
title: StrainInfo SI-ID 350672.1

description: StrainInfo dataset 350672 about a strain of Vermamoeba vermiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350673.1
title: StrainInfo SI-ID 350673.1

description: StrainInfo dataset 350673 about a strain of Tetramitus rostratus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350690.1
title: StrainInfo SI-ID 350690.1

description: StrainInfo dataset 350690 about a strain of Leishmania major. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350691.1
title: StrainInfo SI-ID 350691.1

description: StrainInfo dataset 350691 about a strain of Leishmania mexicana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350692.1
title: StrainInfo SI-ID 350692.1

description: StrainInfo dataset 350692 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350582.1
title: StrainInfo SI-ID 350582.1

description: StrainInfo dataset 350582 about a strain of Paramecium primaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350583.1
title: StrainInfo SI-ID 350583.1

description: StrainInfo dataset 350583 about a strain of Paramecium tetraurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350674.1
title: StrainInfo SI-ID 350674.1

description: StrainInfo dataset 350674 about a strain of Angomonas deanei. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350675.1
title: StrainInfo SI-ID 350675.1

description: StrainInfo dataset 350675 about a strain of Leptomonas lactosovorans. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350676.1
title: StrainInfo SI-ID 350676.1

description: StrainInfo dataset 350676 about a strain of Leptomonas samueli. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350693.1
title: StrainInfo SI-ID 350693.1

description: StrainInfo dataset 350693 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350694.1
title: StrainInfo SI-ID 350694.1

description: StrainInfo dataset 350694 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350695.1
title: StrainInfo SI-ID 350695.1

description: StrainInfo dataset 350695 about a strain of Giardia intestinalis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350696.1
title: StrainInfo SI-ID 350696.1

description: StrainInfo dataset 350696 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350697.1
title: StrainInfo SI-ID 350697.1

description: StrainInfo dataset 350697 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350785.1
title: StrainInfo SI-ID 350785.1

description: StrainInfo dataset 350785 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350677.1
title: StrainInfo SI-ID 350677.1

description: StrainInfo dataset 350677 about a strain of Acanthamoeba rhysodes. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350678.1
title: StrainInfo SI-ID 350678.1

description: StrainInfo dataset 350678 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/t4lkyc
title: University of Azad Jammu and Kashmir Herbarium

description: The herbarium, which was established in 2019, is focused on the flora of Azad Kashmir and northern Pakistan. This floristically rich region encompasses subtropical, temperate, and alpine floras.
DOI: 10.60712/si-id350679.1
title: StrainInfo SI-ID 350679.1

description: StrainInfo dataset 350679 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350680.1
title: StrainInfo SI-ID 350680.1

description: StrainInfo dataset 350680 about a strain of Paramecium tetraurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350698.1
title: StrainInfo SI-ID 350698.1

description: StrainInfo dataset 350698 about a strain of Entamoeba histolytica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350699.1
title: StrainInfo SI-ID 350699.1

description: StrainInfo dataset 350699 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350700.1
title: StrainInfo SI-ID 350700.1

description: StrainInfo dataset 350700 about a strain of Tetramitus rostratus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350701.1
title: StrainInfo SI-ID 350701.1

description: StrainInfo dataset 350701 about a strain of Tetrahymena patula. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350786.1
title: StrainInfo SI-ID 350786.1

description: StrainInfo dataset 350786 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350787.1
title: StrainInfo SI-ID 350787.1

description: StrainInfo dataset 350787 about a strain of Amoeboaphelidium protococcarum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350788.1
title: StrainInfo SI-ID 350788.1

description: StrainInfo dataset 350788 about a strain of Rhynchomonas nasuta. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350789.1
title: StrainInfo SI-ID 350789.1

description: StrainInfo dataset 350789 about a strain of Endolimax nana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/izjsyw
title: Système d'Information sur la Nature et les Paysages d'Ile de France - Données de l'association RENARD provenant de la base de donnée du SINP Île-de-France CETTIA

description: Jeux de données provenant de la base de données CETTIA du Système d'Information sur la Nature et les Paysages d'Ile de France. Il concerne la faune à l'exception des insectes.
DOI: 10.60712/si-id350681.1
title: StrainInfo SI-ID 350681.1

description: StrainInfo dataset 350681 about a strain of Paramecium tetraurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350682.1
title: StrainInfo SI-ID 350682.1

description: StrainInfo dataset 350682 about a strain of Paramecium tetraurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350683.1
title: StrainInfo SI-ID 350683.1

description: StrainInfo dataset 350683 about a strain of Paramecium tetraurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350702.1
title: StrainInfo SI-ID 350702.1

description: StrainInfo dataset 350702 about a strain of Tetrahymena rostrata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350703.1
title: StrainInfo SI-ID 350703.1

description: StrainInfo dataset 350703 about a strain of Tetrahymena limacis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.9vzatq
title: Occurrence Download

description: A dataset containing 10322885 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinopterygii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 10322885 records from 806 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003261-141123120432318/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350704.1
title: StrainInfo SI-ID 350704.1

description: StrainInfo dataset 350704 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350705.1
title: StrainInfo SI-ID 350705.1

description: StrainInfo dataset 350705 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350790.1
title: StrainInfo SI-ID 350790.1

description: StrainInfo dataset 350790 about a strain of Trypanosoma. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350791.1
title: StrainInfo SI-ID 350791.1

description: StrainInfo dataset 350791 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350792.1
title: StrainInfo SI-ID 350792.1

description: StrainInfo dataset 350792 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350793.1
title: StrainInfo SI-ID 350793.1

description: StrainInfo dataset 350793 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350706.1
title: StrainInfo SI-ID 350706.1

description: StrainInfo dataset 350706 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350707.1
title: StrainInfo SI-ID 350707.1

description: StrainInfo dataset 350707 about a strain of Crypthecodinium cohnii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350708.1
title: StrainInfo SI-ID 350708.1

description: StrainInfo dataset 350708 about a strain of Paramecium primaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350794.1
title: StrainInfo SI-ID 350794.1

description: StrainInfo dataset 350794 about a strain of Cafeteria roenbergensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350795.1
title: StrainInfo SI-ID 350795.1

description: StrainInfo dataset 350795 about a strain of Jakoba libera. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350796.1
title: StrainInfo SI-ID 350796.1

description: StrainInfo dataset 350796 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.lqtuqa
title: Occurrence Download

description: A dataset containing 16837 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago falcata L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16837 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025822-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350797.1
title: StrainInfo SI-ID 350797.1

description: StrainInfo dataset 350797 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350885.1
title: StrainInfo SI-ID 350885.1

description: StrainInfo dataset 350885 about a strain of Blastocystis hominis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.