cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6275135
title: Function of a membrane-embedded domain evolutionarily multiplied in the GPI lipid anchor pathway proteins PIG-B, PIG-M, PIG-U, PIG-W, PIG-V, and PIG-Z

description: Distant homology relationships among proteins with many transmembrane regions (TMs) are difficult to detect as they are clouded by the TMs’ hydrophobic compositional bias and mutational divergence in connecting loops. In the case of several GPI lipid anchor biosynthesis pathway components, the hidden evolutionary signal can be revealed with dissectHMMER, a sequence similarity search tool focusing on fold-critical, high complexity sequence segments. We find that a sequence module with 10 TMs in PIG-W, described as acyl transferase, is homologous to PIG-U, a transamidase subunit without characterized molecular function, and to mannosyltransferases PIG-B, PIG-M, PIG-V and PIG-Z. We conclude that this new, membrane-embedded domain named BindGPILA functions as the unit for recognizing, binding and stabilizing the GPI lipid anchor in a modification-competent form as this appears the only functional aspect shared among all proteins. Thus, PIG-U's likely molecular function is shuttling/presenting the anchor in a productive conformation to the transamidase complex.
DOI: 10.6084/m9.figshare.6275135.v1
title: Function of a membrane-embedded domain evolutionarily multiplied in the GPI lipid anchor pathway proteins PIG-B, PIG-M, PIG-U, PIG-W, PIG-V, and PIG-Z

description: Distant homology relationships among proteins with many transmembrane regions (TMs) are difficult to detect as they are clouded by the TMs’ hydrophobic compositional bias and mutational divergence in connecting loops. In the case of several GPI lipid anchor biosynthesis pathway components, the hidden evolutionary signal can be revealed with dissectHMMER, a sequence similarity search tool focusing on fold-critical, high complexity sequence segments. We find that a sequence module with 10 TMs in PIG-W, described as acyl transferase, is homologous to PIG-U, a transamidase subunit without characterized molecular function, and to mannosyltransferases PIG-B, PIG-M, PIG-V and PIG-Z. We conclude that this new, membrane-embedded domain named BindGPILA functions as the unit for recognizing, binding and stabilizing the GPI lipid anchor in a modification-competent form as this appears the only functional aspect shared among all proteins. Thus, PIG-U's likely molecular function is shuttling/presenting the anchor in a productive conformation to the transamidase complex.
DOI: 10.6084/m9.figshare.6274640
title: Additional file 5: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - total resultant linear accelerations. (XLSX 15774 kb)
DOI: 10.6084/m9.figshare.6274640.v1
title: Additional file 5: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - total resultant linear accelerations. (XLSX 15774 kb)
DOI: 10.6084/m9.figshare.6274628
title: Additional file 4: of Validity of shoe-type inertial measurement units for Parkinsonâ s disease patients during treadmill walking

description: List of levodopa-equivalent dose. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6274628.v1
title: Additional file 4: of Validity of shoe-type inertial measurement units for Parkinsonâ s disease patients during treadmill walking

description: List of levodopa-equivalent dose. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6274604
title: Additional file 3: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - spatiotemporal parameters. (XLSX 158 kb)
DOI: 10.6084/m9.figshare.6274604.v1
title: Additional file 3: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - spatiotemporal parameters. (XLSX 158 kb)
DOI: 10.6084/m9.figshare.6274586
title: Additional file 2: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - resultant linear accelerations. (XLSX 9196 kb)
DOI: 10.6084/m9.figshare.6274586.v1
title: Additional file 2: of Validity of shoe-type inertial measurement units for Parkinson’s disease patients during treadmill walking

description: Raw data - resultant linear accelerations. (XLSX 9196 kb)
DOI: 10.6084/m9.figshare.6274565
title: MOESM2 of Mutational analysis of two residues in the DYRK homology box of the protein kinase DYRK1A

description: Additional file 2. Assay results underlying the column diagrams in table form.
DOI: 10.6084/m9.figshare.6274565.v1
title: MOESM2 of Mutational analysis of two residues in the DYRK homology box of the protein kinase DYRK1A

description: Additional file 2. Assay results underlying the column diagrams in table form.
DOI: 10.6084/m9.figshare.12894083
title: data1.xlsx

description: see future article
DOI: 10.6084/m9.figshare.6274493
title: Additional file 1: of Utility of routine ultrasonography follow-up after total thyroidectomy in patients with papillary thyroid carcinoma: a single-center study

description: Raw data in 525 PTC patients who underwent total thyroidectomy. The data file includes size and location of primary PTC, T/N stage, multiplicity, interval and session number of follow-up US, interval of the last follow-up US, interval between total thyroidectomy and first US detection of tumor recurrence, the presence or absence of tumor recurrence, and the site of tumor recurrence. (XLS 89Â kb)
DOI: 10.6084/m9.figshare.6274493.v1
title: Additional file 1: of Utility of routine ultrasonography follow-up after total thyroidectomy in patients with papillary thyroid carcinoma: a single-center study

description: Raw data in 525 PTC patients who underwent total thyroidectomy. The data file includes size and location of primary PTC, T/N stage, multiplicity, interval and session number of follow-up US, interval of the last follow-up US, interval between total thyroidectomy and first US detection of tumor recurrence, the presence or absence of tumor recurrence, and the site of tumor recurrence. (XLS 89Â kb)
DOI: 10.6084/m9.figshare.6274394
title: Additional file 2: of Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum

description: Table S1. Supplementary third trimester characteristics between pregnant women with GDM and normoglycaemic pregnant women. Table S2. Indications for OGTT. Table S3. Supplementary descriptive postpartum. Table S4. Nutrient intake during pregnancy and postpartum. Table S5. Operational taxonomic units differentially abundant in women with and without gestational diabetes during pregnancy and postpartum. Table S6. Operational taxonomic units associated with glycaemic traits in pregnant women independent of GDM status and unadjusted for pre-pregnancy BMI. Table S7. Higher order taxa associated with high sensitivity CRP. Table S8. OTUs associated with high-sensitivity C-reactive protein in laten pregnancy and postpartum. Table S9. Spearman correlations between GDM discriminant taxa and pre-pregnancy BMI. Table S10. Operational taxonomic units differentially abundant in overweigt (n = 67) and obese women (n = 58) compared with lean women (n = 61). Table S11. Operational taxonomic units differentially abundant in women with and without gestational diabetes with available pre-pregnancy BMI. Table S12. Operational taxonomic units associated with weight gain during pregnancy adjusted for pre-pregnancy BMI and gestational age. Table S13. Higher order taxa associated with gestational weight gain. Table S14. OTUs exhibiting differential change from the third trimester to postpartum dependent on GDM status. Table S15. Higher order taxa exhibiting differential change from the third trimester to postpartum dependent on GDM status. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.6274394.v1
title: Additional file 2: of Gestational diabetes is associated with change in the gut microbiota composition in third trimester of pregnancy and postpartum

description: Table S1. Supplementary third trimester characteristics between pregnant women with GDM and normoglycaemic pregnant women. Table S2. Indications for OGTT. Table S3. Supplementary descriptive postpartum. Table S4. Nutrient intake during pregnancy and postpartum. Table S5. Operational taxonomic units differentially abundant in women with and without gestational diabetes during pregnancy and postpartum. Table S6. Operational taxonomic units associated with glycaemic traits in pregnant women independent of GDM status and unadjusted for pre-pregnancy BMI. Table S7. Higher order taxa associated with high sensitivity CRP. Table S8. OTUs associated with high-sensitivity C-reactive protein in laten pregnancy and postpartum. Table S9. Spearman correlations between GDM discriminant taxa and pre-pregnancy BMI. Table S10. Operational taxonomic units differentially abundant in overweigt (n = 67) and obese women (n = 58) compared with lean women (n = 61). Table S11. Operational taxonomic units differentially abundant in women with and without gestational diabetes with available pre-pregnancy BMI. Table S12. Operational taxonomic units associated with weight gain during pregnancy adjusted for pre-pregnancy BMI and gestational age. Table S13. Higher order taxa associated with gestational weight gain. Table S14. OTUs exhibiting differential change from the third trimester to postpartum dependent on GDM status. Table S15. Higher order taxa exhibiting differential change from the third trimester to postpartum dependent on GDM status. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.6274367
title: Additional file 1: of High species diversity of trichostrongyle parasite communities within and between Western Canadian commercial and conservation bison herds revealed by nemabiome metabarcoding

description: FASTA Database. (FASTA 797 kb)
DOI: 10.6084/m9.figshare.6274367.v1
title: Additional file 1: of High species diversity of trichostrongyle parasite communities within and between Western Canadian commercial and conservation bison herds revealed by nemabiome metabarcoding

description: FASTA Database. (FASTA 797 kb)
DOI: 10.6084/m9.figshare.6274355
title: Additional file 7: of An automated algorithm for the detection of cortical interruptions and its underlying loss of trabecular bone; a reproducibility study

description: Data of the cortical interruption-, bone density- and micro-structure parameters. Data of the cortical interruption parameters, and bone density and micro-structure parameters on the first (OP1 twice and OP2) and second scan (OP1). (XLS 63Â kb)
DOI: 10.6084/m9.figshare.6274355.v1
title: Additional file 7: of An automated algorithm for the detection of cortical interruptions and its underlying loss of trabecular bone; a reproducibility study

description: Data of the cortical interruption-, bone density- and micro-structure parameters. Data of the cortical interruption parameters, and bone density and micro-structure parameters on the first (OP1 twice and OP2) and second scan (OP1). (XLS 63Â kb)
DOI: 10.17909/t9-638a-q564
title: GALEX Visits Used in Fleming et al. 2020

description: The GALEX visits covered in the gPhoton analysis found in Fleming et al. 2020. That paper used calibrated photon events from gPhoton, but the raw data ultimate came from the uncalibrated photon events from these visits. Note: none of the AIS-length visits are used in the paper.
DOI: 10.6084/m9.figshare.6274223
title: Additional file 3: of Airborne geographical dispersal of Q fever from livestock holdings to human communities: a systematic review and critical appraisal of evidence

description: Raw literature search results. A .csv file containing data on the 298 research articles identified in primary searches. (CSV 533Â kb)
DOI: 10.6084/m9.figshare.6274223.v1
title: Additional file 3: of Airborne geographical dispersal of Q fever from livestock holdings to human communities: a systematic review and critical appraisal of evidence

description: Raw literature search results. A .csv file containing data on the 298 research articles identified in primary searches. (CSV 533Â kb)
DOI: 10.6084/m9.figshare.6274211
title: Additional file 2 of Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation

description: 3D data analysis Java script for BoneJ in Fiji. Java script, implemented for the extraction of trabecular parameters of an image stack with the BoneJ plugin in Fiji. With BoneJ being installed it is ready to use after opening it in Fiji (File/Open...). (0.763 kb)
DOI: 10.6084/m9.figshare.6274211.v1
title: Additional file 2 of Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation

description: 3D data analysis Java script for BoneJ in Fiji. Java script, implemented for the extraction of trabecular parameters of an image stack with the BoneJ plugin in Fiji. With BoneJ being installed it is ready to use after opening it in Fiji (File/Open...). (0.763 kb)
DOI: 10.6084/m9.figshare.6274205
title: Additional file 2: of Airborne geographical dispersal of Q fever from livestock holdings to human communities: a systematic review and critical appraisal of evidence

description: R functions to perform PubMed searches and collate results. A zipped file containing R functions to perform PubMed literature searches and collate equivalent search results from additional databases into a single dataframe. (ZIP 4Â kb)
DOI: 10.6084/m9.figshare.6274205.v1
title: Additional file 2: of Airborne geographical dispersal of Q fever from livestock holdings to human communities: a systematic review and critical appraisal of evidence

description: R functions to perform PubMed searches and collate results. A zipped file containing R functions to perform PubMed literature searches and collate equivalent search results from additional databases into a single dataframe. (ZIP 4Â kb)
DOI: 10.6084/m9.figshare.6274187
title: Additional file 1 of Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation

description: List of all analyzed specimens and their trabecular parameters. Complete list of the specimens analyzed in this study (.csv-file), including information about their origin (museum and collection number), their relative resolution, the CT-scanner, their sex, their assigned lifestyle category and the raw data characterizing the VOIs (MDT, DA, ConnD, TbTh, TbSp, BV/TV, BS/BV). (CSV 13 kb)
DOI: 10.6084/m9.figshare.6274187.v1
title: Additional file 1 of Trabecular architecture in the sciuromorph femoral head: allometry and functional adaptation

description: List of all analyzed specimens and their trabecular parameters. Complete list of the specimens analyzed in this study (.csv-file), including information about their origin (museum and collection number), their relative resolution, the CT-scanner, their sex, their assigned lifestyle category and the raw data characterizing the VOIs (MDT, DA, ConnD, TbTh, TbSp, BV/TV, BS/BV). (CSV 13 kb)
DOI: 10.6084/m9.figshare.6274178
title: Additional file 1: of Contrast-enhanced ultrasonography of the pancreas shows impaired perfusion in pancreas insufficient cystic fibrosis patients

description: Anonymized data file displaying the background data used in the article. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6274178.v1
title: Additional file 1: of Contrast-enhanced ultrasonography of the pancreas shows impaired perfusion in pancreas insufficient cystic fibrosis patients

description: Anonymized data file displaying the background data used in the article. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6274148.v1
title: Gill surface area and ecological lifestyle traits in 12 shark species

description: These data and code are from Bigman et al. (2018) Journal of Morphology and include the raw gill surface area and body mass estimates for 12 shark species, the assigned ecological lifestyle traits for each of those 12 species, and the raw gill surface area and associated dimensions (total filament length, average lamellar frequency, and mean bilateral lamellar surface area) as well as body mass for <i>Mustelus californicus </i>examined in this study<i>. </i>Also included is the code for all analyses in the paper. <br>These data are primarily obtained from Hughes (1972), Hughes et al. (1986), Emery and Sczcepanski (1985), Hata (1993), Wegner et al. (2010), and Wootton et al. (2016). Data were available from more than one study for three species (Common Thresher Shark, Shortfin Mako, and Sandbar Shark). We urge anyone who is using these data to read the original papers to understand the data.<br><br><br>*Cite this figshare and the following if any of the data or code is used:<br>Bigman JS, Pardo SA, Prinzing TS, Dando M, Wegner NC, Dulvy NK. Ecological lifestyles and the scaling of shark gill surface area. Journal of Morphology. 2018; 1-9.
DOI: 10.6084/m9.figshare.6274112
title: The medial prefrontal cortex is required for responding to alcohol-predictive cues but only in the absence of alcohol delivery

description: Data and materials underlying a paper accepted in the Journal of Psychopharmacology.<br><br>Data includes:<br>- Raw data underlying reported experiments in Graphpad Prism .pzfx and .xml formats<br>- The raw data is also included as .csv and .xlsx files for compatibility.<br><br>Materials:<br>- Med-PC code for experimental procedures. The NC_habituation program was used for habituation sessions, the PavP01-240-15CS program was used in the alcohol and test sessions to deliver cues, and the PavP01-240-nocue program was used to run rats in the neutral context without cues or alcohol deliveries.<br>
DOI: 10.6084/m9.figshare.6274112.v1
title: The medial prefrontal cortex is required for responding to alcohol-predictive cues but only in the absence of alcohol delivery

description: Data and materials underlying a paper accepted in the Journal of Psychopharmacology.<br><br>Data includes:<br>- Raw data underlying reported experiments in Graphpad Prism .pzfx and .xml formats<br>- The raw data is also included as .csv and .xlsx files for compatibility.<br><br>Materials:<br>- Med-PC code for experimental procedures. The NC_habituation program was used for habituation sessions, the PavP01-240-15CS program was used in the alcohol and test sessions to deliver cues, and the PavP01-240-nocue program was used to run rats in the neutral context without cues or alcohol deliveries.<br>
DOI: 10.6084/m9.figshare.6273809
title: 2016 Southeast and South Asian Fires

description: MODIS_aod_3k_mean.mat is the mean of all MODIS 3K AOD measurements after cloud clearing and quality control have been taken into account. The time period is from January 1st to March 31st, 2016.<br>modeled_bc_columns_EOF_GFED.mat is the daily time series of the modeled BC columns from the EOF and the Hotspot cases from February 1st to March 31st, 2016.<br><br>Lat_Lon_SEAFire_WRF.mat is the WRF model domain.<br>MOPITT_CO_spatial_temporal.mat contains the daily MOPITT CO data at 700mb, as well as in the vertical over specific domains, after cloud clearing, quality control, and a minimum of 2 layers worth of data have been applied.<br><br>OMI_NO2_and_EOFs.mat contains EOF1, EOF2, PC1, PC2, and the values of NO2 over space and time.<br><br>WRF_modeled_bc_daily.mat contains the full 4-dimensional modeled BC fields, for both the EOF and hotspot case.<br><br>EOF_emissions.rar and Hotspot_emissions.rar contain the emissions of all species required to run WRF for the EOF and hotspot cases respectively.<br>
DOI: 10.6084/m9.figshare.6273809.v1
title: 2016 Southeast and South Asian Fires

description: MODIS_aod_3k_mean.mat is the mean of all MODIS 3K AOD measurements after cloud clearing and quality control have been taken into account. The time period is from January 1st to March 31st, 2016.<br>modeled_bc_columns_EOF_GFED.mat is the daily time series of the modeled BC columns from the EOF and the Hotspot cases from February 1st to March 31st, 2016.<br><br>Lat_Lon_SEAFire_WRF.mat is the WRF model domain.<br>MOPITT_CO_spatial_temporal.mat contains the daily MOPITT CO data at 700mb, as well as in the vertical over specific domains, after cloud clearing, quality control, and a minimum of 2 layers worth of data have been applied.<br><br>OMI_NO2_and_EOFs.mat contains EOF1, EOF2, PC1, PC2, and the values of NO2 over space and time.<br><br>WRF_modeled_bc_daily.mat contains the full 4-dimensional modeled BC fields, for both the EOF and hotspot case.<br><br>EOF_emissions.rar and Hotspot_emissions.rar contain the emissions of all species required to run WRF for the EOF and hotspot cases respectively.<br>
DOI: 10.6084/m9.figshare.6273800
title: Biofilm Formation and Corrosion on Carbon Steel API 5LX60 in Clayey Soil

description: Corrosion of buried pipelines is a matter of concern to the oil and gas industry since the time when carbon steel began to be widely used in these pipelines for the transportation of fluids. The microbial communities associated with biofilms promote modification in the surrounding environment and may accentuate the degradation of oil and gas pipelines causing leaks or even accidents. This work aimed to evaluate corrosion and biofilm formation in carbon steel API 5LX60 coupons buried in clayey soil from an industrial region in north-eastern Brazil. The average corrosion rates were determined by gravimetric test and the quantification of bacteria and fungi were using the Most Probable Number (MPN) and Colony Forming Units (CFU) techniques respectively. The results showed a great influence of clayey soil on corrosion rates and time of adherence for microorganisms on metal surfaces.
DOI: 10.6084/m9.figshare.6273800.v1
title: Biofilm Formation and Corrosion on Carbon Steel API 5LX60 in Clayey Soil

description: Corrosion of buried pipelines is a matter of concern to the oil and gas industry since the time when carbon steel began to be widely used in these pipelines for the transportation of fluids. The microbial communities associated with biofilms promote modification in the surrounding environment and may accentuate the degradation of oil and gas pipelines causing leaks or even accidents. This work aimed to evaluate corrosion and biofilm formation in carbon steel API 5LX60 coupons buried in clayey soil from an industrial region in north-eastern Brazil. The average corrosion rates were determined by gravimetric test and the quantification of bacteria and fungi were using the Most Probable Number (MPN) and Colony Forming Units (CFU) techniques respectively. The results showed a great influence of clayey soil on corrosion rates and time of adherence for microorganisms on metal surfaces.
DOI: 10.6084/m9.figshare.6273797
title: Preparation of Antireflective Silica Coating by the Sol-Gel Method for Heliothermic Power Plants

description: This work deals with the deposition of a thin layer of porous silica antireflective coating onto glass substrates. The films were deposited with different withdrawal speeds and heat-treated at 425°C for 30 minutes. The effects of heat treatment and film deposition rate on the films reflectance were evaluated. The diffuse reflectance was measured using ultraviolet-visible (UV-Vis) spectroscopy. Scanning electron microscopy (SEM) was used for microstructural evaluation of the films. The water contact angle upon the films surface was evaluated using a tensiometer and was based on the sessile drop technique. The mechanical characteristics of the films were evaluated by tape test and pencil hardness. The obtained sol-gel silica coatings were homogeneous and free of cracks. UV-Vis analysis of the glass substrate revealed a reflectance value of 3.86%, whereas the lowest reflectance value obtained for antireflective coatings was 2.72%. The contact angle measurement showed that, for all films, there was wetting of the film by water, characterizing them as hydrophilic. The adhesion of the films were 4B and the pencil hardness were 3H.