cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12736103
title: Data for Prasetya, Peters & Delhey “Carotenoid-based plumage colour saturation increases with temperature in Australian passerines” Journal of Biogeography

description: <b>Variable names and description</b><br> specimen: specimen number in museum collections scientific.name: scientific name common.name: common name year: year of collection longitude: longitude of collection location latitude : latitude of collection location x: chromatic coordinate x obtained from visual modelling (relative stimulation of VS vs S cone) y: chromatic coordinate y obtained from visual modelling (relative stimulation of M vs VS+S cone) z: chromatic coordinate z obtained from visual modelling (relative stimulation of L vs VS+S+M cone) PC1: first principal component summarising variation in xyz chromatic coordinates computed within each species. chroma: saturation, distance from xyz coordinates of measurement to the achromatic centre (xyz coordinates of a perfectly flat reflectance spectrum). sens.type: visual sensitivity type used to compute xyz coordinates, typeV=V-type visual sensitivities and typeU=U-type visual sensitivities. irrad.type: type of light source used in visual modelling (irradiance), where d65=standard daylight, forestshade= forest shade and woodlandshade= woodland shade. correct.sens: (yes/no) whether the visual sensitivity used for visual modelling (“sens.type”) matches the presumed visual sensitivity type of the species (“visual.system”). Temp: annual mean temperature of the collection location in a 50km radius. Prec: annual precipitation of the collection location in a 50km radius. primary.productivity: primary productivity of the collection location in a 50km radius. Temp.25: annual mean temperature of the collection location in a 25km radius. Prec.25: annual precipitation of the collection location in a 25km radius. primary.productivity.25: primary productivity of the collection location in a 25km radius. mobility: mobility score for each species (0-1-2). carotenoid: yellow/red, type of carotenoid of plumage patch measured. visual.system: presumed visual sensitivity of the species. plumage.patch: name of plumage patch measured <br>
DOI: 10.6084/m9.figshare.8129291.v1
title: Additional file 2: of Preclinical validation of 3-phosphoinositide-dependent protein kinase 1 inhibition in pancreatic cancer

description: Figure S1. Effect of pharmacological inhibition of PDK1 on CFPAC-1 cells. CFPAC-1 cells were treated with different concentrations of PDK1 inhibitors and their effects on cell viability (a, b) and anchorage independent growth (c, d) were assessed. Data are expressed as percentage of control cells treated with DMSO and are means ± SEM of n ≥ 3 independent experiments performed in duplicate. Statistical analysis was performed using GraphPad Prism version 6.0 and one-way ANOVA with Dunnett’s multiple comparisons test. *p
DOI: 10.6084/m9.figshare.12736103.v1
title: Data for Prasetya, Peters & Delhey “Carotenoid-based plumage colour saturation increases with temperature in Australian passerines” Journal of Biogeography

description: <b>Variable names and description</b><br> specimen: specimen number in museum collections scientific.name: scientific name common.name: common name year: year of collection longitude: longitude of collection location latitude : latitude of collection location x: chromatic coordinate x obtained from visual modelling (relative stimulation of VS vs S cone) y: chromatic coordinate y obtained from visual modelling (relative stimulation of M vs VS+S cone) z: chromatic coordinate z obtained from visual modelling (relative stimulation of L vs VS+S+M cone) PC1: first principal component summarising variation in xyz chromatic coordinates computed within each species. chroma: saturation, distance from xyz coordinates of measurement to the achromatic centre (xyz coordinates of a perfectly flat reflectance spectrum). sens.type: visual sensitivity type used to compute xyz coordinates, typeV=V-type visual sensitivities and typeU=U-type visual sensitivities. irrad.type: type of light source used in visual modelling (irradiance), where d65=standard daylight, forestshade= forest shade and woodlandshade= woodland shade. correct.sens: (yes/no) whether the visual sensitivity used for visual modelling (“sens.type”) matches the presumed visual sensitivity type of the species (“visual.system”). Temp: annual mean temperature of the collection location in a 50km radius. Prec: annual precipitation of the collection location in a 50km radius. primary.productivity: primary productivity of the collection location in a 50km radius. Temp.25: annual mean temperature of the collection location in a 25km radius. Prec.25: annual precipitation of the collection location in a 25km radius. primary.productivity.25: primary productivity of the collection location in a 25km radius. mobility: mobility score for each species (0-1-2). carotenoid: yellow/red, type of carotenoid of plumage patch measured. visual.system: presumed visual sensitivity of the species. plumage.patch: name of plumage patch measured <br>
DOI: 10.5517/ccdc.csd.cc21khrw
title: CCDC 1893658: Experimental Crystal Structure Determination

description: Related Article: Sara A. Dille, Benjamin Mogesa, Jacilynn Brant, Victor N. Nemykin, Matthias Zeller, and Partha Basu|2019|CSD Communication|||
DOI: 10.6084/m9.figshare.8129081
title: MOESM2 of miRNA deregulation targets specific pathways in leiomyosarcoma development: an in silico analysis

description: Additional file 2: Table S2. miRNAs targets predicted by TargetScan with cumulative weighted context score cut-off level of â â 1.0 or smaller.
DOI: 10.6084/m9.figshare.8129081.v1
title: MOESM2 of miRNA deregulation targets specific pathways in leiomyosarcoma development: an in silico analysis

description: Additional file 2: Table S2. miRNAs targets predicted by TargetScan with cumulative weighted context score cut-off level of â â 1.0 or smaller.
DOI: 10.6084/m9.figshare.8129072
title: MOESM1 of miRNA deregulation targets specific pathways in leiomyosarcoma development: an in silico analysis

description: Additional file 1: Table S1. miRNAs retrieved in S-MED (Sarcoma-microRNA Expression Database), Student T-test P-val. Red: miRNAs with available targets prediction in TargetScan.
DOI: 10.6084/m9.figshare.8129072.v1
title: MOESM1 of miRNA deregulation targets specific pathways in leiomyosarcoma development: an in silico analysis

description: Additional file 1: Table S1. miRNAs retrieved in S-MED (Sarcoma-microRNA Expression Database), Student T-test P-val. Red: miRNAs with available targets prediction in TargetScan.
DOI: 10.6084/m9.figshare.8129054
title: Additional File 4:

description: Table S4. Statistics and list of differentially expressed genes shared between B. amyloliquefaciens (Bs006) and P. fluorescens (Ps006). Results at different analysis times (1 h, 48 h, and 96 h) are in different tabs. (XLS 2503 kb)
DOI: 10.6084/m9.figshare.8129054.v1
title: Additional File 4:

description: Table S4. Statistics and list of differentially expressed genes shared between B. amyloliquefaciens (Bs006) and P. fluorescens (Ps006). Results at different analysis times (1 h, 48 h, and 96 h) are in different tabs. (XLS 2503 kb)
DOI: 10.6084/m9.figshare.8129045
title: Additional File 3:

description: Table S3. Statistics and list of differentially expressed genes in samples inoculated with P. fluorescens (Ps006). Results at different analysis times (1 h, 48 h, 96 h), shared genes between times, and those exclusively expressed at a specific time are in different tabs. (XLS 10493 kb)
DOI: 10.6084/m9.figshare.8129045.v1
title: Additional File 3:

description: Table S3. Statistics and list of differentially expressed genes in samples inoculated with P. fluorescens (Ps006). Results at different analysis times (1 h, 48 h, 96 h), shared genes between times, and those exclusively expressed at a specific time are in different tabs. (XLS 10493 kb)
DOI: 10.6084/m9.figshare.8129039
title: Additional File 2:

description: Table S2. Statistics and list of differentially expressed genes in samples inoculated with B. amyloliquefaciens (Bs006). Results at different analysis times (1 h, 48 h, 96 h), shared genes between times, and those exclusively expressed at a specific time are in different tabs. (XLS 10271 kb)
DOI: 10.6084/m9.figshare.8129039.v1
title: Additional File 2:

description: Table S2. Statistics and list of differentially expressed genes in samples inoculated with B. amyloliquefaciens (Bs006). Results at different analysis times (1 h, 48 h, 96 h), shared genes between times, and those exclusively expressed at a specific time are in different tabs. (XLS 10271 kb)
DOI: 10.6084/m9.figshare.8128991
title: MOESM4 of A microarray-based pathogen chip for simultaneous molecular detection of transfusionâ transmitted infectious agents

description: Additional file 4: Table S2. Validation of pathogen chip detecion results.
DOI: 10.6084/m9.figshare.8128991.v1
title: MOESM4 of A microarray-based pathogen chip for simultaneous molecular detection of transfusionâ transmitted infectious agents

description: Additional file 4: Table S2. Validation of pathogen chip detecion results.
DOI: 10.6084/m9.figshare.8128970
title: MOESM1 of A microarray-based pathogen chip for simultaneous molecular detection of transfusionâ transmitted infectious agents

description: Additional file 1: Table S1. Viral pathogens used in testing the Pathogen Chip.
DOI: 10.6084/m9.figshare.8128970.v1
title: MOESM1 of A microarray-based pathogen chip for simultaneous molecular detection of transfusionâ transmitted infectious agents

description: Additional file 1: Table S1. Viral pathogens used in testing the Pathogen Chip.
DOI: 10.6084/m9.figshare.8128949
title: MOESM1 of The first seroepidemiological survey for Angiostrongylus vasorum in domestic dogs from Romania

description: Additional file 1: Table S1. Raw dataset including the information for all dogs included in the study.
DOI: 10.6084/m9.figshare.8128949.v1
title: MOESM1 of The first seroepidemiological survey for Angiostrongylus vasorum in domestic dogs from Romania

description: Additional file 1: Table S1. Raw dataset including the information for all dogs included in the study.
DOI: 10.6084/m9.figshare.8128913
title: Additional file 8: of Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size

description: Table of top Wolbachia BLASTX hits from the assembly. (CSV 104 kb)
DOI: 10.6084/m9.figshare.8128913.v1
title: Additional file 8: of Transcriptome assembly for a colour-polymorphic grasshopper (Gomphocerus sibiricus) with a very large genome size

description: Table of top Wolbachia BLASTX hits from the assembly. (CSV 104 kb)
DOI: 10.6084/m9.figshare.8128733
title: Additional file 7: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative HPT proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [51]; c [99]; d [100]. (XLS 45 kb)
DOI: 10.6084/m9.figshare.8128733.v1
title: Additional file 7: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative HPT proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [51]; c [99]; d [100]. (XLS 45 kb)
DOI: 10.6084/m9.figshare.8128724
title: Additional file 6: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative CKI2 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [100]. (XLS 33 kb)
DOI: 10.6084/m9.figshare.8128724.v1
title: Additional file 6: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative CKI2 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [100]. (XLS 33 kb)
DOI: 10.6084/m9.figshare.8128721
title: Additional file 5: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative CKI1 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [100]. (XLS 32 kb)
DOI: 10.6084/m9.figshare.8128721.v1
title: Additional file 5: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative CKI1 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [100]. (XLS 32 kb)
DOI: 10.6084/m9.figshare.8128718
title: Additional file 4: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative AHK1 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [100]. (XLS 35 kb)
DOI: 10.6084/m9.figshare.8128718.v1
title: Additional file 4: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative AHK1 proteins in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [100]. (XLS 35 kb)
DOI: 10.6084/m9.figshare.8128715
title: Additional file 3: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative ethylene receptors in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [94]. (XLS 42 kb)
DOI: 10.6084/m9.figshare.8128715.v1
title: Additional file 3: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative ethylene receptors in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [94]. (XLS 42 kb)
DOI: 10.6084/m9.figshare.8128706
title: Additional file 21: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Response Regulators (RR) proteins. Sequences are listed in the fasta format. (TXT 140 kb)
DOI: 10.6084/m9.figshare.8128706.v1
title: Additional file 21: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Response Regulators (RR) proteins. Sequences are listed in the fasta format. (TXT 140 kb)
DOI: 10.6084/m9.figshare.8128703
title: Additional file 20: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Histidine PhosphoTranfer (HPT) proteins. Sequences are listed in the fasta format. (TXT 14 kb)
DOI: 10.6084/m9.figshare.8128703.v1
title: Additional file 20: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Histidine PhosphoTranfer (HPT) proteins. Sequences are listed in the fasta format. (TXT 14 kb)
DOI: 10.6084/m9.figshare.8128691
title: Additional file 1: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative cytokinin receptors in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [94]; d [54]; e [55]. (XLS 37 kb)
DOI: 10.6084/m9.figshare.8128691.v1
title: Additional file 1: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative cytokinin receptors in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [99]; c [94]; d [54]; e [55]. (XLS 37 kb)
DOI: 10.6084/m9.figshare.8128682
title: Additional file 19: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Histidine Kinases (HKs) proteins. Sequences are listed in the fasta format. (TXT 122 kb)
DOI: 10.6084/m9.figshare.8128682.v1
title: Additional file 19: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Sequences of all Histidine Kinases (HKs) proteins. Sequences are listed in the fasta format. (TXT 122 kb)
DOI: 10.6084/m9.figshare.8128676
title: Additional file 18: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of primers used. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8128676.v1
title: Additional file 18: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of primers used. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8128667
title: Additional file 17: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Domain composition of the different TCS protein families. For each TCS protein family, the domain composition is given. The Pfam ID is indicated for each domain. (XLS 28 kb)
DOI: 10.6084/m9.figshare.8128667.v1
title: Additional file 17: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Domain composition of the different TCS protein families. For each TCS protein family, the domain composition is given. The Pfam ID is indicated for each domain. (XLS 28 kb)
DOI: 10.6084/m9.figshare.8128661
title: Additional file 16: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Hierarchical clustering of the expression in roots and nodules of Medicago truncatula genes related to the Two Component System (TCS) signaling. Selected M. truncatula genome-wide expression datasets were used, corresponding to the Symbimics RNAseq database for roots, nodules and nodule zones [69], and for the root epidermis after a Nod Factors (NF) treatment [60]. Log2 expression values (deseq), normalized as described in the previously cited articles, were used for all TCS signaling genes identified in the M. truncatula genome to construct with the MeV software a heat-map based on Euclidean distances and average linkage clustering. The color scale ranges from red (no expression) to blue (strongest expression). A color code was additionally used for gene names corresponding to the different TCS protein families: in black, CHKs (CHASE domain containing Histidine Kinases); in green, HPTs (Histidine PhosphoTranfert proteins); in blue, RRBs (Type-B Response Regulators); and in red, RRAs (Type-A Response Regulators). Non-canonical proteins are labelled with a blue dot, and the bracket indicates the core cytokinin signaling identified in the study. Nodule zones were defined as in [69]: ZI, meristematic zone; ZIId and ZIIp, distal and proximal differentiation/rhizobial infection zones; IZ, inter-zone II/III; ZIII, nitrogen fixation zone. NF, Nod Factor treatment as described in [60]. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8128661.v1
title: Additional file 16: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: Hierarchical clustering of the expression in roots and nodules of Medicago truncatula genes related to the Two Component System (TCS) signaling. Selected M. truncatula genome-wide expression datasets were used, corresponding to the Symbimics RNAseq database for roots, nodules and nodule zones [69], and for the root epidermis after a Nod Factors (NF) treatment [60]. Log2 expression values (deseq), normalized as described in the previously cited articles, were used for all TCS signaling genes identified in the M. truncatula genome to construct with the MeV software a heat-map based on Euclidean distances and average linkage clustering. The color scale ranges from red (no expression) to blue (strongest expression). A color code was additionally used for gene names corresponding to the different TCS protein families: in black, CHKs (CHASE domain containing Histidine Kinases); in green, HPTs (Histidine PhosphoTranfert proteins); in blue, RRBs (Type-B Response Regulators); and in red, RRAs (Type-A Response Regulators). Non-canonical proteins are labelled with a blue dot, and the bracket indicates the core cytokinin signaling identified in the study. Nodule zones were defined as in [69]: ZI, meristematic zone; ZIId and ZIIp, distal and proximal differentiation/rhizobial infection zones; IZ, inter-zone II/III; ZIII, nitrogen fixation zone. NF, Nod Factor treatment as described in [60]. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8128643
title: Additional file 14: of Diversification of cytokinin phosphotransfer signaling genes in Medicago truncatula and other legume genomes

description: List of putative RRAs in the genome of Arabidopsis thaliana, Vitis vinifera and all studied legumes. For each chromosomal locus, the TCS protein name, as well as a previously published name when available, the protein length, the A. thaliana most closely related protein, and the conserved domains are listed. a [12]; b [51]; c [99]; d [100]; e [56]. (XLS 38 kb)
DOI: 10.6084/m9.figshare.12871484
title: SSH assimilation based on CAS-ESM-C

description: SSH assimilation experiments output