cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0166114.10fu
title: SH0166114.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0166115.10fu
title: SH0166115.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0166116.10fu
title: SH0166116.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17632/jgmn9h7jx5
title: Interplay of chaotic advection, local dispersion and density for mixing enhancement in engineered injection extraction systems

description: This dataset contains the following information:
 * snapshots.mat: coordinates for the final shapes of the plume
 * delta_area.mat: timeseries for the relative area increase 

The variable names correspond to:
 concentration_mgL: initial concentration of New Coccine in mg/L 
 DD_c: density-driven in coarse porous medium
 VDCA_c: variable-density with chaotic advection in coarse porous medium
 DD_c: density-driven in fine porous medium
 VDCA_c: variable-density with chaotic advection in fine porous medium
DOI: 10.34810/data2316
title: Replication data for: Exploring the prebiotic potential of dietary fibre concentrates from artichoke, red pepper, cucumber, and carrot by-products

description: Using an in vitro colonic digestion model, we explored the prebiotic potential of dietary fibre concentrates (DFCs) derived from artichoke, red pepper, cucumber, and carrot byproducts. In vitro colonic digestions were carried out for up to 48 hours to simulate colonic digestion. Gut microbiota were assessed at 24 and 48 hours using quantitative PCR targeting key microbial taxa, including Firmicutes, Bacteroidetes, Clostridium, Bifidobacterium, Enterococcus, Lactobacillus, Bacteroidaceae, and Enterobacteriaceae. DNA was extracted using the QIAamp Fast DNA Stool Mini Kit and quantified using a NanoDrop spectrophotometer. Microbial abundance was normalized to total Eubacteria and calculated using the 2^ÐDelta-Delta Ct method.
In parallel, Short-Chain Fatty Acids (SCFAs) productions (acetic, propionic, and butyric acids) were assed at 3, 6, 12, 18, 24, and 48 hours using gas chromatography coupled with flame ionization. Total SCFA concentrations and SCFA profiles were calculated to evaluate microbial metabolic activity in response to the different DFCs. Additionally, pH values were also recorded over time, using a pH meter.
description: DFC: Dietary Fibre Concentrates 
SCFAs: Short Chain Catty Acids
DOI: 10.5281/zenodo.17305129
title: Assessing the Impact of Environmental Sustainability on Tourism Receipts ARDL Evidence from India's Tourism Sector
DOI: 10.5281/zenodo.17305130
title: Assessing the Impact of Environmental Sustainability on Tourism Receipts ARDL Evidence from India's Tourism Sector
DOI: 10.5281/zenodo.16308363
title: Processed metabolomics data from Suillus luteus and Pinus massoniana interaction

description: This dataset supports the manuscript entitled “Suillus luteus enhances Pinus massoniana growth through promotion of root IAA biosynthesis.” It  contains UPLC-MS/MS based targeted metabolomics data
DOI: 10.5281/zenodo.15599901
title: Redox-dependent structural and thermal stability of HMGB1: A thermodynamic analysis; DOI: 10.1016/j.bpc.2025.107472
DOI: 10.5281/zenodo.15599902
title: Redox-dependent structural and thermal stability of HMGB1: A thermodynamic analysis; DOI: 10.1016/j.bpc.2025.107472
DOI: 10.5281/zenodo.15907385
title: What Motivates Whom? A Survey of Newcomers and Experienced OSS Practitioners

description: Please click on "Version 1.1" from the right menu under "Versions" to access the publicly available dataset.
DOI: 10.15468/dl.aaeszj
title: Occurrence Download

description: A dataset containing 9331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clematis terniflora",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9331 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027381-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a436n
title: Occurrence Download

description: A dataset containing 1770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polypogon viridis",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1770 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027382-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rwtxd
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crepis newii",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 107 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027387-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29617067
title: Data of media source for Mekong Delta agritourism communication

description: This is the data for mass media, governmental websites and companies information about agritourism in Mekong Delta, Vietnam
DOI: 10.6084/m9.figshare.29617067.v1
title: Data of media source for Mekong Delta agritourism communication

description: This is the data for mass media, governmental websites and companies information about agritourism in Mekong Delta, Vietnam
DOI: 10.15468/dl.av759m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027384-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvgnfr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027383-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16311859
title: BETA-FOR_SP7_Hanging_Deadwood_Microbial_Bacterial_OTUs_2018_2021

description: In 2018, we hung out two small logs on 60 plots in Uniwald Sailershausen. 1x F. sylvatica, 1x P. sylvestris. The logs were hung in the centre of the plots. In 2018 we took an initial sample (drill sample for the microbial community and wood slice for determining mass loss as a proxy for decomposition). In 2021 we took another round of drill and slice samples. The dataset here is the community matrix for determined bacterial OTUs of the wooden logs. 
description: Because this is an experiment that pre-dates the official start of BETA-FOR, the labels are different.

The community matrix is filled with read counts for each sample/bacterial OTU. OTUs are rows, samples are columns.

The sample name e.g. P1_SubBu18 is structured as:

"P1" - Plot number 1. These plot numbers correspond to BETA-FOR plot/patch numbers. Plots in the dataset are 1-60 (i.e. only in Sailershausen).

"Sub" - we only analyzed the microbial community in 2018 on a subset of the samples. "Sub" simply explicitly indicates this. This identification does not appear for 2021 samples.

"Bu" - The sample is Beech (F. sylvatica). Alternatively, this space in the sample name may be "Ki" for Pine (P. sylvestris).

"18" - This indicates the year in which the sample was taken. It will either be "18" for 2018 or "21" for 2021.
DOI: 10.15468/dl.wzceqq
title: Occurrence Download

description: A dataset containing 9964 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaerophyllum tainturieri"
 ]
}

 The dataset includes 9964 records from 180 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027389-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16311705
title: Dataset and Model Code for Built-up Area Recognition in Chongqing (2015)

description: This dataset and code support the study of high-precision built-up area recognition in Chongqing, China, using multi-source spatial data and attention-based deep learning models.

The dataset includes raster layers for key physical and socio-economic indicators in 2015, such as population density (PD), gross domestic product (GDP), normalized difference vegetation index (NDVI), land surface temperature (LST), digital elevation model (DEM), and nighttime lights (NTL). All rasters are resampled to a 300-meter resolution and aligned in the same spatial coordinate system.

Labeled built-up area positions are provided as raster masks and NumPy arrays. The repository also contains Python scripts for data preprocessing, feature normalization, and label generation.

Additionally, we provide full training and validation code for the deep learning model, including the model architecture, loss functions, training loop, and evaluation logic. The model employs spatial attention mechanisms to effectively capture long-range dependencies in the urban environment.

All data and scripts are shared under the Creative Commons Attribution 4.0 (CC-BY 4.0) license.

This repository enables full reproducibility of the study’s results and figures, in line with the Open Data policy of the journal.
DOI: 10.15468/dl.b25xha
title: Occurrence Download

description: A dataset containing 140889 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium sanguineum"
 ]
}

 The dataset includes 140889 records from 983 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027281-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29617223
title: Supplementary Tables ST1 to ST4.docx

description: Please see the associated manuscript, as per the project title.
DOI: 10.6084/m9.figshare.29617223.v1
title: Supplementary Tables ST1 to ST4.docx

description: Please see the associated manuscript, as per the project title.
DOI: 10.5524/100374
title: Supporting data for "Improving amphibian genomic resources: a multi-tissue reference transcriptome of an iconic invader"

description: Cane toads (Rhinella marina) are an iconic invasive species introduced to four continents and well utilized for studies of rapid evolution in introduced environments. Despite the long introduction history of this species, its profound ecological impacts and its utility for demonstrating evolutionary principles, genetic information is sparse. Here we produce a de novo transcriptome spanning multiple tissues and life stages to enable investigation of the genetic basis of previously identified rapid phenotypic change over the introduced range. Using approximately 1.9 billion reads, from developing tadpoles and 6 adult tissue-specific cDNA libraries, and a transcriptome assembly pipeline encompassing 100 separate de novo assemblies, we constructed 62,202 transcripts, of which we functionally annotated ~50 %. Our transcriptome assembly exhibits 90% full-length completeness of the BUSCO (benchmarking universal single-copy orthologs) dataset. Robust assembly metrics and comparisons to several available anuran transcriptomes and genomes indicate that our cane toad assembly is one of the most complete anuran genomic resources available. This comprehensive anuran transcriptome will provide a valuable resource for investigation of genes under selection during invasion in cane toads, but will also greatly expand our general knowledge of anuran genomes, which are underrepresented in the literature. The dataset is publically available in NCBI and GigaDB to serve as a resource for other researchers.
DOI: 10.15468/dl.7957x3
title: Occurrence Download

description: A dataset containing 1043 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetrao urogalloides"
 ]
}

 The dataset includes 1043 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027390-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mscwqg
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 202 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027391-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a58a53
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Brunei Darussalam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027393-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ktute8
title: Occurrence Download

description: A dataset containing 294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Echinochloa crus-galli",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 294 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027392-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q24ge3
title: Occurrence Download

description: A dataset containing 163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrosenecio battiscombei",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 163 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027395-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvjxxp
title: Occurrence Download

description: A dataset containing 14566 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus gramineus"
 ]
}

 The dataset includes 14566 records from 370 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027394-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgj4e7
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Tetramorium spinosum (Pergande, 1896)"
 ]
}

 The dataset includes 72 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121185-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vggxg
title: Occurrence Download

description: A dataset containing 33451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Otus scops",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 33451 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078356-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epcd9c
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudanchialina inermis (Illig, 1906)"
 ]
}

 The dataset includes 25 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131134-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttjs9x
title: Occurrence Download

description: A dataset containing 41353 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pterois volitans (Linnaeus, 1758)"
 ]
}

 The dataset includes 41353 records from 204 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0164634-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wa9cqd
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Natural History Museum Rotterdam - Specimens",
 {
 "and" : [
 "BasisOfRecord is one of (Specimen)",
 "TaxonKey is one of (Balaena mysticetus Linnaeus, 1758)"
 ]
 }
 ]
}

 The dataset includes 42 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0184261-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vr6fn
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudameira furcata Sars G.O., 1911"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0131129-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rrra69
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heteromysis bredini Brattegard, 1970"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0121197-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5hpp9
title: Occurrence Download

description: A dataset containing 5022 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Otus senegalensis",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 5022 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078360-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.999vhv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aa weddelliana (Rchb.f.) Schltr., Acaena trifida Ruiz & Pav., Achyrocline alata (Kunth) DC., Acmella alba (L'Hér.) Jansen, Acmella oleracea (L.) R.K.Jansen, Acnistus arborescens (L.) Schltdl.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Literature Occurrence)",
 {
 "or" : [
 "Country is ARGENTINA",
 "Country is BOLIVIA",
 "Country is BRAZIL",
 "Country is CHILE",
 "Country is COLOMBIA",
 "Country is ECUADOR",
 "Country is FRENCH_GUIANA",
 "Country is PARAGUAY",
 "Country is SURINAME",
 "Country is URUGUAY",
 "Country is VENEZUELA"
 ]
 },
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141268-220831081235567/datasets/export for details.