cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22817507.v1
title: Doctoral thesis-Mengqi Wang-Chapter 4

description: <strong>Table S1</strong>: General whole genome DNA methylation sequence statistics per sample; <strong>Table S2</strong>: Comparisons of methylation levels of cytosine sites in the context of CpG, CHG and CHH at different genic structures and genomic regions between SCP and HC groups; <strong>Table S3</strong>: List of differentially methylated cytosine sites in the context of CpG; <strong>Table S4</strong>: List of differentially methylated cytosine sites in the context of CHG and CHH; <strong>Table S5</strong>: The distribution of differentially methylated cytosine sites among chromosomes and genic structures; <strong>Table S6</strong>: List of differentially methylated regions identified based on CpG sites; <strong>Table S7</strong>: The distribution of DMCs in genes and the functional enrichment for genes that harbored DMCs; <strong>Table S8</strong>: List of differentially methylated methylation haplotype blocks; <strong>Table S9</strong>: Functional enrichment for genes harboring dMHBs in their promoters, first exons and/or first introns; <strong>Table S10</strong>: List of identified differentially methylated and expressed genes (DMEGs); <strong>Table S11</strong>: Functional enrichment for DMEGs; <strong>Table S12</strong>: Candidate discriminate signatures of SC mastitis selected by sPLS-DA and DIABLO; <strong>Table S13</strong>: Sample information and results of target bisulfite amplicon sequencing for two dMHBs discriminate signatures in a larger sample size; <strong>Table S14</strong>: Information on cows used
DOI: 10.34740/kaggle/dsv/5683709
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.22817543
title: HF FEVI

description: DATA BASE
DOI: 10.6084/m9.figshare.22817543.v1
title: HF FEVI

description: DATA BASE
DOI: 10.6084/m9.figshare.22644238
title: "Antibiotics under our feet" Public Engagement Project (dataset)

description: This link goes to data files are from the analysis of soil samples collected during the University of St Andrews "Antibiotics under our feet" public engagement activity in the form of a citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews.<br> The following files types and formats are included: Soil sample data ID, collection date and location and associated environmental data in .xlsx format (Excel spreadsheet); Quantitative results from heavy metal analysis of soil samples in .xlsx format (Excel spreadsheet); Raw sequence files; text-based format for representing nucleotide or amino acid sequence with quality data: .fastq (zipped, can be opened with a text editor); Interactive Krona plot of DNA sequencing results in .html format.
DOI: 10.6084/m9.figshare.22644238.v1
title: "Antibiotics under our feet" Public Engagement Project (dataset)

description: This link goes to data files are from the analysis of soil samples collected during the University of St Andrews "Antibiotics under our feet" public engagement activity in the form of a citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews.<br> The following files types and formats are included: Soil sample data ID, collection date and location and associated environmental data in .xlsx format (Excel spreadsheet); Quantitative results from heavy metal analysis of soil samples in .xlsx format (Excel spreadsheet); Raw sequence files; text-based format for representing nucleotide or amino acid sequence with quality data: .fastq (zipped, can be opened with a text editor); Interactive Krona plot of DNA sequencing results in .html format.
DOI: 10.6084/m9.figshare.22817561
title: "Antibiotics under our feet" Bioinformatics Taxonomic and Functional Profiling

description: This link goes to data files from the bioinformatics taxonomic and functional profiling of soil samples collected during the University of St Andrews "Antibiotics under our feet" citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews.<br> The taxonomic classifications are in the form of html files that can be opened in a browser. The functional profiling has three output files searchable to determine desired pathways. The README explains the pipeline used and the output files.
DOI: 10.6084/m9.figshare.22817561.v1
title: "Antibiotics under our feet" Bioinformatics Taxonomic and Functional Profiling

description: This link goes to data files from the bioinformatics taxonomic and functional profiling of soil samples collected during the University of St Andrews "Antibiotics under our feet" citizen science project funded by a ScotPEN Wellcome Engagement Award to Clarissa Melo Czekster, University of St Andrews.<br> The taxonomic classifications are in the form of html files that can be opened in a browser. The functional profiling has three output files searchable to determine desired pathways. The README explains the pipeline used and the output files.
DOI: 10.6084/m9.figshare.22817582
title: Doctoral thesis-Mengqi Wang-Chapter 2

description: <strong>Supplemental Table S1</strong>: Sample information <strong>Supplemental Table S2</strong>: Primers of select genes for RT-qPCR analysis <strong>Supplemental Table S3</strong>: Sequencing and read statistics <strong>Supplemental Table S4</strong>: Differentially expressed genes identified between <em>S. aureus</em>-positive and control groups. <strong>Supplemental Table S5</strong>: Functional enrichment for differentially expressed genes. <strong>Supplemental Table S6</strong>: Genes subjected to weighted gene co-expression network analysis. <strong>Supplemental Table S7</strong>: Functional enrichment for genes of each module related to <em>S. aureus</em> infection. <strong>Supplemental Table S8</strong>: Immune-related genes identified from turquoise module and enrichment in multiple GO terms and/or KEGG pathways with immune or disease functions.
DOI: 10.6084/m9.figshare.22817582.v1
title: Doctoral thesis-Mengqi Wang-Chapter 2

description: <strong>Supplemental Table S1</strong>: Sample information <strong>Supplemental Table S2</strong>: Primers of select genes for RT-qPCR analysis <strong>Supplemental Table S3</strong>: Sequencing and read statistics <strong>Supplemental Table S4</strong>: Differentially expressed genes identified between <em>S. aureus</em>-positive and control groups. <strong>Supplemental Table S5</strong>: Functional enrichment for differentially expressed genes. <strong>Supplemental Table S6</strong>: Genes subjected to weighted gene co-expression network analysis. <strong>Supplemental Table S7</strong>: Functional enrichment for genes of each module related to <em>S. aureus</em> infection. <strong>Supplemental Table S8</strong>: Immune-related genes identified from turquoise module and enrichment in multiple GO terms and/or KEGG pathways with immune or disease functions.
DOI: 10.6084/m9.figshare.1168744
title: Inverted (Koch Snowflake) Fractal Model

description: This spreadsheet model is to complement the publication ' In Situ Experiment on Fractal Corresponds with Cosmological Observations and Conjectures.' This model is capable of demonstrating early universe 'inflation'. Read my working paper at In Situ Experiment on Fractal Corresponds with Cosmological Observations and Conjectures <br>
DOI: 10.6084/m9.figshare.1168744.v8
title: Inverted (Koch Snowflake) Fractal Model

description: This spreadsheet model is to complement the publication 'Fractal Geometry a Possible Explanation to the Accelerating Expansion of the Universe and Other Standard ΛCMB Model Anomalies'. This model is capable to demonstrating early universe 'inflation'. Read my working paper at Making Sense of the Cosmos by a Fractal Geometry Experiment<br>
DOI: 10.6084/m9.figshare.22817618
title: Untitled Item

description: We investigated the motion-related lexical patterning in three textbooks taught in countries with different language classes according to Talmy's (1985) cognitive categorization of languages.
DOI: 10.6084/m9.figshare.22817618.v1
title: Untitled Item

description: We investigated the motion-related lexical patterning in three textbooks taught in countries with different language classes according to Talmy's (1985) cognitive categorization of languages.
DOI: 10.34740/kaggle/dsv/5684124
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.6084/m9.figshare.22817633
title: OCP10k

description: OCP 10 dataset https://github.com/Open-Catalyst-Project/ocp/blob/main/MODELS.md#is2re-models <br> from jarvis.core.atoms import Atoms from jarvis.core.specie import atomic_numbers_to_symbols from ocpmodels.datasets import SinglePointLmdbDataset from jarvis.db.jsonutils import dumpjson from collections import defaultdict # dataset = SinglePointLmdbDataset({"src": "/wrk/knc6/oc/ocp/data/is2re/10k/train/data.lmdb"}) train = SinglePointLmdbDataset( {"src": "ocp/data/is2re/10k/train/data.lmdb"} ) val = SinglePointLmdbDataset( {"src": "ocp/data/is2re/all/val_id/data.lmdb"} ) test = SinglePointLmdbDataset( {"src": "ocp/data/is2re/all/test_id/data.lmdb"} ) print("n_train=", len(train)) print("n_val=", len(val)) print("n_test=", len(test)) <br>
DOI: 10.6084/m9.figshare.22817651
title: arxiv_summary

description: https://github.com/usnistgov/chemnlp
DOI: 10.25345/c50r9md86
title: MassIVE MSV000091938 - Diazobutanone-assisted isobaric labeling of phospholipids and sulfated glycolipids enables multiplexed quantitative lipidomics using LC-MS/MS
title: This Diazo-assisted method features remarkable performances, including labeling efficiency, detection sensitivity, quantitative accuracy, and broad applicability to various biological samples.
DOI: 10.5519/qd.oo6ctudr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7 records)
DOI: 10.5519/qd.d4kjusgr
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (250 records)
DOI: 10.6084/m9.figshare.22116203
title: User generated data of mobile health app(2019-2020)

description: User generated data of mobile health app (weight management app) in 5 app stores from 2019 to 2020.
DOI: 10.6084/m9.figshare.22116203.v2
title: User generated data of mobile health app(2019-2020)

description: User generated data of mobile health app (weight management app) in 5 app stores from 2019 to 2020.
DOI: 10.6084/m9.figshare.22116203.v1
title: User generated data of mobile health app(2019-2020)

description: User generated data of mobile health app (weight management app) in 5 app stores from 2019 to 2020.
DOI: 10.25345/c5w08ws4m
title: MassIVE MSV000091939 - GNPS negative and positive files 1234
title: Jojoba is a shrub with many medicinal and pharmacological activities
DOI: 10.6084/m9.figshare.22817675
title: 1、Aims and scope.doc

description: To compare the safety and efficacy of novel tip-flexible suctioning ureteral access sheath (NTFS-UAS) and traditional ureteral access sheath (T-UAS) combined with flexible ureteroscope for treating unilateral renal calculi . <br>
DOI: 10.6084/m9.figshare.22817675.v1
title: 1、Aims and scope.doc

description: To compare the safety and efficacy of novel tip-flexible suctioning ureteral access sheath (NTFS-UAS) and traditional ureteral access sheath (T-UAS) combined with flexible ureteroscope for treating unilateral renal calculi . <br>
DOI: 10.7910/dvn/vtzwoo
title: Expert Interview Isabell

description: Expert Interview with Isabell about Supply Chain Management
DOI: 10.5281/zenodo.6458107
title: Replication data for: Enhancing user awareness on inferences obtained from fitness trackers data

description: Survey results and fitness trackers datasets used for the evaluation of PrivacyEnhAction application.
DOI: 10.5281/zenodo.6458106
title: Replication data for: Enhancing user awareness on inferences obtained from fitness trackers data

description: Survey results and fitness trackers datasets used for the evaluation of PrivacyEnhAction application.
DOI: 10.5281/zenodo.7934945
title: Dataset for privacy policy analysis

description: Two annotated datasets of 133 privacy policies of smart home devices and fitness trackers for the two cases a) extracting<br> information regarding the eight GDPR user rights present in a privacy policy, and b) extracting information about possible data inferences that can be drawn about the user based on the collected data as described in the text of the privacy policy.
DOI: 10.5281/zenodo.7934944
title: Dataset for privacy policy analysis

description: Two annotated datasets of 133 privacy policies of smart home devices and fitness trackers for the two cases a) extracting<br> information regarding the eight GDPR user rights present in a privacy policy, and b) extracting information about possible data inferences that can be drawn about the user based on the collected data as described in the text of the privacy policy.
DOI: 10.6084/m9.figshare.22817753
title: ALL COI sequence.fas

description: <em>Macrobrachium nipponense</em> is a major farmed species of freshwater shrimp in China and its genetic diversity is of high value in aquaculture. The construction of the Three Gorges Project has slowed down the flow velocity of water in the Three Gorges Reservoir (TGR) and made the water more clear, which is more favourable for the survival and reproduction of <em>M. nipponense</em>. However, there is a lack of studies on the genetic diversity of <em>M. nipponense</em> populations in the TGR. In this study, mitochondrial COI gene sequences were used as molecular marker to analyze the genetic diversity, genetic differentiation and historical demography of eight populations of <em>M. nipponense</em> in TGR.
DOI: 10.6084/m9.figshare.22817753.v1
title: ALL COI sequence.fas

description: <em>Macrobrachium nipponense</em> is a major farmed species of freshwater shrimp in China and its genetic diversity is of high value in aquaculture. The construction of the Three Gorges Project has slowed down the flow velocity of water in the Three Gorges Reservoir (TGR) and made the water more clear, which is more favourable for the survival and reproduction of <em>M. nipponense</em>. However, there is a lack of studies on the genetic diversity of <em>M. nipponense</em> populations in the TGR. In this study, mitochondrial COI gene sequences were used as molecular marker to analyze the genetic diversity, genetic differentiation and historical demography of eight populations of <em>M. nipponense</em> in TGR.
DOI: 10.25380/iastate.19733856
title: Global 1 km resolution daily near-surface air temperature for 2015

description: A gridded 1 km resolution global (50°S ~79°N) daily maximum and minimum near-surface air temperature dataset for 2015 that was generated using a seamless 1 km resolution land surface temperature dataset, a 30-arc second (~1 km) resolution digital elevation model (DEM) data, and air temperature observations at weather stations and a spatially varying coefficient model with sign preservation (SVCM-SP) algorithm. The gridded air temperature dataset is of great use in global studies of urban, climate, and hydrology. Documentation for this dataset can be found with the 2003 data. Data from other years is available at: https://doi.org/10.25380/iastate.c.6005185 <br> Change log: All 2015 files updated 5/12/23
DOI: 10.25380/iastate.19733856.v3
title: Global 1 km resolution daily near-surface air temperature for 2015

description: A gridded 1 km resolution global (50°S ~79°N) daily maximum and minimum near-surface air temperature dataset for 2015 that was generated using a seamless 1 km resolution land surface temperature dataset, a 30-arc second (~1 km) resolution digital elevation model (DEM) data, and air temperature observations at weather stations and a spatially varying coefficient model with sign preservation (SVCM-SP) algorithm. The gridded air temperature dataset is of great use in global studies of urban, climate, and hydrology. Documentation for this dataset can be found with the 2003 data. Data from other years is available at: https://doi.org/10.25380/iastate.c.6005185 <br> Change log: All 2015 files updated 5/12/23
DOI: 10.25380/iastate.19733856.v2
title: Global 1 km resolution daily near-surface air temperature for 2015

description: A gridded 1 km resolution global (50°S ~79°N) daily maximum and minimum near-surface air temperature dataset for 2015 that was generated using a seamless 1 km resolution land surface temperature dataset, a 30-arc second (~1 km) resolution digital elevation model (DEM) data, and air temperature observations at weather stations and a spatially varying coefficient model with sign preservation (SVCM-SP) algorithm. The gridded air temperature dataset is of great use in global studies of urban, climate, and hydrology. Documentation for this dataset can be found with the 2003 data. Data from other years is available at: https://doi.org/10.25380/iastate.c.6005185
DOI: 10.5517/ccdc.csd.cc1ldh3l
title: CCDC 1471759: Experimental Crystal Structure Determination

description: Related Article: Eunyoung Yoon, Jintaek Gong, Olivia Livingstone, Mariapaz Velez, Russell W. Driver, Hee-Seung Lee*|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7934973
title: Ananthi G Pillai

description: Result for the post Director of CRC Tripura (NILD)
DOI: 10.5281/zenodo.7934974
title: Ananthi G Pillai

description: Result for the post Director of CRC Tripura (NILD)
DOI: 10.14469/hpc/12311
title: Source data of the manuscript - Emission enhancement of erbium in a reverse nanofocusing waveguide

description: Files containing the data which is displayed in the panels in figure 1-5 of the main manuscript, according to the file names.
DOI: 10.14469/hpc/12430
title: Source data of the manuscript - Emission enhancement of erbium in a reverse nanofocusing waveguide

description: Files containing the data which is displayed in the panels in figure 1-5 of the main manuscript of the article "Emission enhancement of erbium in a reverse nanofocusing waveguide", according to the file names.
DOI: 10.14469/hpc/12527
title: isopropyl 2-pyridyl

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12528
title: isopropyl 3-cyano

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12529
title: isopropyl 3-pyridyl

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12530
title: isopropyl 4-cyano

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12531
title: isopropyl 4-pyridyl

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12532
title: isopropyl 2-cyano trans

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12533
title: isopropyl 2-pyridyl trans

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12534
title: isopropyl 3-cyano trans

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12535
title: isopropyl 3-pyridyl trans

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/12536
title: Isopropyl 4 -pyridyl attempt 2 trans

description: Gaussian 16 (C01) calculation
DOI: 10.5519/qd.tmwvi3sl
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11 records)
DOI: 10.5281/zenodo.7933674
title: Replication data for: High-frequency variability induced in the Southern California Bight by a wind event in Sebastián Vizcaíno Bay, Baja California

description: Replication data for Ramos-Musalem, K. , Gille, S. T., Cornuelle, B. D., & Mazloff, M. R. (2023) High-frequency variability induced in the Southern California Bight by a wind event in Sebastián Vizcaíno Bay, Baja California<em>, Journal of Geophysical Research: Oceans</em> <strong>Contents:</strong> <strong><code>1. Input/</code></strong>: Contains the necessary input files to re-run the MITgcm configuration provided here: https://github.com/anakarinarm/SVB_highFreqVar_paper/ including the bathymetry, wind stress forcing, and initial temperature and salinity fields. MITgcmUV version: checkpoint67y <strong>Sea surface height model results for 5 days of simulation in:</strong> <strong><code>2. 06_512x612x100_ORL_SVB/</code></strong>: Runs with Sebastian Vizcaino Bay. <code>01_FebTS_SVB/</code>: Base run, February-like stratification <code>02_barotropic_SVB/</code>: Constant T and S <code>04_AugTS_SVB/</code> : August-like stratification grid_vars: grid variables (depth, land masks, horizontal and vertical spacing) <strong><code>3. 06_512x612x100_ORL</code>:</strong> Runs without Sebastian Vizcaino Bay <code>01_FebTS/</code>: Base run, February-like stratification <code>02_barotropic/</code>: Constant T and S <code>04_AugTS/</code>: August-like stratification grid_vars: grid variables (depth, land masks, horizontal and vertical spacing) <strong>4. <code>saved_data</code>/:</strong> post-processed model results including calculations needed to reproduce the figures in the manuscript. The scripts used to obtain these files are available here: https://github.com/anakarinarm/SVB_highFreqVar_paper
description: Partially funded by NASA Surface Water and Ocean Topography Science Team (award 80NSSC20K1136) and NASA Ocean Vector Winds Science Team (award 80NSSC19K0059)
DOI: 10.5281/zenodo.7933673
title: Replication data for: High-frequency variability induced in the Southern California Bight by a wind event in Sebastián Vizcaíno Bay, Baja California

description: Replication data for Ramos-Musalem, K. , Gille, S. T., Cornuelle, B. D., & Mazloff, M. R. (2023) High-frequency variability induced in the Southern California Bight by a wind event in Sebastián Vizcaíno Bay, Baja California<em>, Journal of Geophysical Research: Oceans</em> <strong>Contents:</strong> <strong><code>1. Input/</code></strong>: Contains the necessary input files to re-run the MITgcm configuration provided here: https://github.com/anakarinarm/SVB_highFreqVar_paper/ including the bathymetry, wind stress forcing, and initial temperature and salinity fields. MITgcmUV version: checkpoint67y <strong>Sea surface height model results for 5 days of simulation in:</strong> <strong><code>2. 06_512x612x100_ORL_SVB/</code></strong>: Runs with Sebastian Vizcaino Bay. <code>01_FebTS_SVB/</code>: Base run, February-like stratification <code>02_barotropic_SVB/</code>: Constant T and S <code>04_AugTS_SVB/</code> : August-like stratification grid_vars: grid variables (depth, land masks, horizontal and vertical spacing) <strong><code>3. 06_512x612x100_ORL</code>:</strong> Runs without Sebastian Vizcaino Bay <code>01_FebTS/</code>: Base run, February-like stratification <code>02_barotropic/</code>: Constant T and S <code>04_AugTS/</code>: August-like stratification grid_vars: grid variables (depth, land masks, horizontal and vertical spacing) <strong>4. <code>saved_data</code>/:</strong> post-processed model results including calculations needed to reproduce the figures in the manuscript. The scripts used to obtain these files are available here: https://github.com/anakarinarm/SVB_highFreqVar_paper
description: Partially funded by NASA Surface Water and Ocean Topography Science Team (award 80NSSC20K1136) and NASA Ocean Vector Winds Science Team (award 80NSSC19K0059)
DOI: 10.5281/zenodo.7627293
title: Confocal data of Oncelytris esquamatus, holotype, NIGP200820

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices for the holotype of <em>Oncelytris esquamatus</em> (NIGP200820) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "<em>Oncelytris esquamatus</em> gen. et sp. nov. from mid-Cretaceous amber of northern Myanmar (Coleoptera: Lucanidae)" (DOI:10.11646/zootaxa.5284.1.10). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 488 nm (Argon) or 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software.