cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28348557.v1
title: Additional file 2 of Enhancing microbial predator–prey detection with network and trait-based analyses

description: Supplementary Tables: Supplementary Table S1: Count data Cercozoa. Table S2: Count data Green Algae. Table S3: Count data Ochrophytes. Table S4. Sampling sites. Table S5. Diatom primers and tags designed for this study*. Table S6. Green algae primers and tags designed for this study*. Table S7. Primers used in this study. Table S8. Cercozoa, green algae, and ochrophytes included in the internal standards of each run. Table S9. Cercozoa cultures established in this study. Table S10. Algae and ochrophyte cultures established in this study. Table S11. One-way ANOVA comparisons of alpha diversity indices — OTU richness, exponential Shannon, and inverse Simpson— across polar biocrusts samples (N = 116) from Svalbard, the Antarctic Peninsula, and Continental Antarctica. Results presented separately for Cercozoa, green algae, and ochrophytes. The table displays F-values with degrees of freedom (df) for the nominator and denominator, along with associated p-values derived from one-way ANOVA comparisons. Table S12. PERMANOVA results for taxonomic groups across environmental factors. Analysis of polar biocrusts samples (N = 116) from Svalbard, the Antarctic Peninsula, and Continental Antarctica. Table S13. Network topological features, including inter- and intra-domain co-occurrences for Cercozoa, green algae, and ochrophytes. N = 116. Table S14. Summary of the ANCOVA models for predator counts. Table S15. Summary of the ANCOVA models for algae counts. Table S16. Summary of co-occurrence and correlation interactions identified in Cercozoan-algae HMSC networks across models.
DOI: 10.6084/m9.figshare.28348560
title: Additional file 1 of Integrated transcriptomic and metabolomic analyses reveal critical gene regulatory network in response to drought stress in Dendrobium nobile Lindl

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28348560.v1
title: Additional file 1 of Integrated transcriptomic and metabolomic analyses reveal critical gene regulatory network in response to drought stress in Dendrobium nobile Lindl

description: Supplementary Material 1.
DOI: 10.15468/dl.zwkjer
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum macrophyllum Cav.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 19 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014348-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bmbqee
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum mexicanum Kunth)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014349-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jh3ta
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum panamense Turcz.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014350-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28348607
title: Additional file 13 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 13: Supplementary Data 3. Spatial covariates used in machine learning.
DOI: 10.6084/m9.figshare.28348599.v1
title: Additional file 2 of MAAT: a new nonparametric Bayesian framework for incorporating multiple functional annotations in transcriptome-wide association studies

description: Additional file 2: Table S3. List of TF-tagged genes identified by MAAT, along with the TFs regulating these genes. The TFs are well-validated to play important roles in the corresponding trait.
DOI: 10.6084/m9.figshare.28348602
title: Additional file 3 of MAAT: a new nonparametric Bayesian framework for incorporating multiple functional annotations in transcriptome-wide association studies

description: Additional file 3: Table S4. Full list of epigenetic-tagged genes identified by MAAT.
DOI: 10.6084/m9.figshare.28348602.v1
title: Additional file 3 of MAAT: a new nonparametric Bayesian framework for incorporating multiple functional annotations in transcriptome-wide association studies

description: Additional file 3: Table S4. Full list of epigenetic-tagged genes identified by MAAT.
DOI: 10.6084/m9.figshare.28348601
title: Additional file 11 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 11: Supplementary Data 1. Information on the identified ATGs in microbial communities.
DOI: 10.6084/m9.figshare.28348601.v1
title: Additional file 11 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 11: Supplementary Data 1. Information on the identified ATGs in microbial communities.
DOI: 10.15468/dl.fwtj2e
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erythroxylum rotundifolium Lunan)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 63 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014351-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348604
title: Additional file 12 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 12: Supplementary Data 2. Distribution data of ATGs in microbial communities.
DOI: 10.6084/m9.figshare.28348607.v1
title: Additional file 13 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 13: Supplementary Data 3. Spatial covariates used in machine learning.
DOI: 10.6084/m9.figshare.28348613
title: Additional file 15 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 15: Supplementary Data 5. Relative importance of variables for predicting ATG cluster diversity.
DOI: 10.6084/m9.figshare.28348616.v1
title: Additional file 16 of Global biogeography and projection of antimicrobial toxin genes

description: Additional file 16: Supplementary Data 6. Relative importance of variables for predicting ATG family diversity.
DOI: 10.15468/dl.9rhs2y
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acalypha diversifolia Jacq.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014352-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.42tdmx
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acalypha macrostachya Jacq.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014353-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28348637.v1
title: Additional file 1 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.28348640.v1
title: Additional file 2 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28348643
title: Additional file 3 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28348643.v1
title: Additional file 3 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28348649
title: Additional file 5 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.28348649.v1
title: Additional file 5 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.28348646
title: Additional file 4 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.28348658
title: Additional file 7 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.28348658.v1
title: Additional file 7 of EDF1 accelerates ganglioside GD3 accumulation to boost CD52-mediated CD8+ T cell dysfunction in neuroblastoma

description: Supplementary Material 7.
DOI: 10.6084/m9.figshare.28348668
title: Additional file 2 of Enterococcus and Eggerthella species are enriched in the gut microbiomes of COVID-19 cases in Uganda

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28348668.v1
title: Additional file 2 of Enterococcus and Eggerthella species are enriched in the gut microbiomes of COVID-19 cases in Uganda

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.28348685
title: Additional file 1 of Quantitative profiling of the vaginal microbiota improves resolution of the microbiota-immune axis

description: Supplementary Material 1: Supplementary methods. Figure S1: Variation in total bacterial load and vaginal soluble immune factors across CST-IV subgroups. Figure S2: BV-associated bacteria drive the association between total bacterial load and immune factors within CST-III. Figure S3: Genital immune milieu cluster tightly with vaginal microbiota composition. Figure S4: Genital immune milieu is closely tied to vaginal microbiota composition in an independent, Uganda-based confirmatory cohort. Table S1: Association between vaginal CST and sociodemographic variables. Table S2: The absolute abundance of BV-associated bacteria, including G. vaginalis and F. vaginae, but not L. iners, were positively associated with sE-cad and IL-1α. Table S3: Nugent scores of women misclassified by the logistic regression model predicting Nugent BV with bacterial load in the SWOP cohort. Table S4: CST subgroups of women misclassified by the logistic regression model predicting molecular BV with bacterial load in the SWOP cohort. Table S5: Comparison of linear regression models predicting soluble immune factors with different vaginal microbiota characterization metrics. Table S6: Comparison of sociodemographic characteristics based on availability of complete immune data in the SWOP cohort. Table S7: Association between PAM immune cluster and sociodemographic variables. Table S8: Sociodemographic factors for Uganda-based confirmatory cohort. N = 61. Table S9: Nugent scores of women misclassified by the logistic regression model predicting Nugent BV with bacterial load in the Uganda-based confirmatory cohort. Table S10: Comparison of linear regression models predicting soluble immune factors with different vaginal microbiota characterization metrics in the confirmatory Uganda-based confirmatory cohort. Table S11: Primer and probe sequences for qPCR assays quantifying total bacterial load.
DOI: 10.6084/m9.figshare.28348677
title: Additional file 1 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 1. Commercial natural products.
DOI: 10.6084/m9.figshare.28348677.v1
title: Additional file 1 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 1. Commercial natural products.
DOI: 10.6084/m9.figshare.28348680
title: Additional file 2 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 2. Traditional Chinese medicine molecules.
DOI: 10.6084/m9.figshare.28348680.v1
title: Additional file 2 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 2. Traditional Chinese medicine molecules.
DOI: 10.6084/m9.figshare.28348683.v1
title: Additional file 3 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 3. Integrated natural product information.
DOI: 10.6084/m9.figshare.28348683
title: Additional file 3 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 3. Integrated natural product information.
DOI: 10.6084/m9.figshare.28348686
title: Additional file 4 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 4. Virtual docking results.
DOI: 10.6084/m9.figshare.28348686.v1
title: Additional file 4 of Targeting AI-2 quorum sensing: harnessing natural products against Streptococcus suis biofilm infection

description: Additional file 4. Virtual docking results.
DOI: 10.15468/dl.478bj4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acalypha multiflora (Standl.) Radcl.-Sm.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014354-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28348694
title: Additional file 2 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 2: Table S2 Metabolites identified in bronchoalveolar lavage fluid. Table S3 Metabolites identified in saliva. Table S4 Metabolites identified in serum. Table S5 Metabolites identified in sputum. Table S6 Metabolites identified in urine.
DOI: 10.6084/m9.figshare.28348694.v1
title: Additional file 2 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 2: Table S2 Metabolites identified in bronchoalveolar lavage fluid. Table S3 Metabolites identified in saliva. Table S4 Metabolites identified in serum. Table S5 Metabolites identified in sputum. Table S6 Metabolites identified in urine.
DOI: 10.6084/m9.figshare.28348697
title: Additional file 3 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 3: Table S7 Significantly differential metabolites identified in bronchoalveolar lavage fluid. Table S8 Significantly differential metabolites identified in saliva. Table S9 Significantly differential metabolites identified in serum. Table S10 Significantly differential metabolites identified in sputum. Table S11 Significantly differential metabolites identified in urine.
DOI: 10.6084/m9.figshare.28348697.v1
title: Additional file 3 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 3: Table S7 Significantly differential metabolites identified in bronchoalveolar lavage fluid. Table S8 Significantly differential metabolites identified in saliva. Table S9 Significantly differential metabolites identified in serum. Table S10 Significantly differential metabolites identified in sputum. Table S11 Significantly differential metabolites identified in urine.
DOI: 10.6084/m9.figshare.28348700
title: Additional file 4 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 4: Table S12 Enrichment analysis of metabolites dysregulated in bronchoalveolar lavage fluid. Table S13 Enrichment analysis of metabolites dysregulated in serum. Table S14 Enrichment analysis of metabolites dysregulated in sputum. Table S15 Enrichment analysis of dysregulated metabolites in all samples.
DOI: 10.6084/m9.figshare.28348700.v1
title: Additional file 4 of Study on the potential diagnostic value of metabolomics changes in different biological fluids for aspiration pneumonia

description: Supplementary Material 4: Table S12 Enrichment analysis of metabolites dysregulated in bronchoalveolar lavage fluid. Table S13 Enrichment analysis of metabolites dysregulated in serum. Table S14 Enrichment analysis of metabolites dysregulated in sputum. Table S15 Enrichment analysis of dysregulated metabolites in all samples.
DOI: 10.6084/m9.figshare.28348715
title: Additional file 3 of Targeting CXCL8 signaling sensitizes HNSCC to anlotinib by reducing tumor-associated macrophage-derived CLU

description: Supplementary Material 3.
DOI: 10.6084/m9.figshare.28348715.v1
title: Additional file 3 of Targeting CXCL8 signaling sensitizes HNSCC to anlotinib by reducing tumor-associated macrophage-derived CLU

description: Supplementary Material 3.
DOI: 10.15468/dl.4chgj8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acidocroton madrigalensis Hanan-Alipi & V.W.Steinm.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014356-250127130748423/datasets/export for details.
DOI: 10.15468/dl.ejraba
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acalypha schiedeana Schltdl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014355-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.se56fa
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adelia barbinervis Schltdl. & Cham.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014357-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.meacm9
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adelia oaxacana (Müll.Arg.) Hemsl.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014358-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcnhb8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alchornea chiapasana Miranda)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014359-250127130748423/datasets/export for details.
DOI: 10.15468/dl.xhqq3x
title: Occurrence Download

description: A dataset containing 185516 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Heracleum mantegazzianum Sommier & Levier"
 ]
}

 The dataset includes 185516 records from 563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014328-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syz3u9
title: Occurrence Download

description: A dataset containing 2215013 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pitangus sulphuratus (Linnaeus, 1766)"
 ]
}

 The dataset includes 2215013 records from 670 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014332-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.