cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17028/rd.lboro.25444657
title: Supplementary information files for On-field rehabilitation in football: current practice and perceptions: A survey of the English Premier League and Football League

description: © the Authors, CC-BY-NC-ND 4.0Supplementary files for article On-field rehabilitation in football: current practice and perceptions: A survey of the English Premier League and Football LeagueIntroductionReturn to play related research is increasing rapidly, with two recent competency-based frameworks offering conceptualised support for on-field rehabilitation (OFR) decision-making. It is still unknown, however, who is responsible for OFR and how they typically select, monitor, and progress OFR processes.AimsThe purpose of this study was to investigate current OFR practice within English professional football to support practitioners with decision-making and highlight opportunities for future research related to the design, monitoring, and progression of OFR.MethodsSixty-nine practitioners responsible for the design and implementation of OFR at 69 clubs (75% of the English Premier League and Football League) responded to a survey containing 30 questions (14 open and 16 closed).ResultsThe main findings were that therapists (physiotherapists/sports therapists) have the largest influence on OFR, followed by physical performance coaches (sports scientists/strength and conditioning coaches), technical coaches and medical doctors. There was more agreement for the ordering of specific OFR drills earlier in the process when activities are easier to control. The most frequently reported objective monitoring tool was global positioning systems (GPS), with functional/clinical experience/expertise remaining subjectively vital. GPS outputs (<i>e.g</i>., sprint metrics and accelerations/decelerations) were most used for between session decision-making, with verbal communication being key for within session decision-making.ConclusionFuture research should use evidence of current practice, such as drill design and monitoring techniques, to explore drill-level analysis and give practitioners greater insights into which stage of current OFR frameworks specific drills fall, and how they might be more objectively progressed/regressed.
DOI: 10.17028/rd.lboro.25444657.v1
title: Supplementary information files for On-field rehabilitation in football: current practice and perceptions: A survey of the English Premier League and Football League

description: © the Authors, CC-BY-NC-ND 4.0Supplementary files for article On-field rehabilitation in football: current practice and perceptions: A survey of the English Premier League and Football LeagueIntroductionReturn to play related research is increasing rapidly, with two recent competency-based frameworks offering conceptualised support for on-field rehabilitation (OFR) decision-making. It is still unknown, however, who is responsible for OFR and how they typically select, monitor, and progress OFR processes.AimsThe purpose of this study was to investigate current OFR practice within English professional football to support practitioners with decision-making and highlight opportunities for future research related to the design, monitoring, and progression of OFR.MethodsSixty-nine practitioners responsible for the design and implementation of OFR at 69 clubs (75% of the English Premier League and Football League) responded to a survey containing 30 questions (14 open and 16 closed).ResultsThe main findings were that therapists (physiotherapists/sports therapists) have the largest influence on OFR, followed by physical performance coaches (sports scientists/strength and conditioning coaches), technical coaches and medical doctors. There was more agreement for the ordering of specific OFR drills earlier in the process when activities are easier to control. The most frequently reported objective monitoring tool was global positioning systems (GPS), with functional/clinical experience/expertise remaining subjectively vital. GPS outputs (<i>e.g</i>., sprint metrics and accelerations/decelerations) were most used for between session decision-making, with verbal communication being key for within session decision-making.ConclusionFuture research should use evidence of current practice, such as drill design and monitoring techniques, to explore drill-level analysis and give practitioners greater insights into which stage of current OFR frameworks specific drills fall, and how they might be more objectively progressed/regressed.
DOI: 10.15468/9rb622
title: Projet d'acquisition : A63_Biriatou-Inventaire à l'aide de tubes capteurs de poils

description: Inventaires à l’aide de tubes capteurs de poils et analyse génétique des poils par séquençage à haut débit du gène CO1 (Analyses réalisées par le labo GeCoLab de l’Université de liège – DR Johan Michaux) – Me demander si besoin de plus de précisions sur la méthodologie génétique.
Les tubes sont posés dans le milieu naturel sur des lignes de 100 m à raison d’une station de pose tous les 10 m pouvant regrouper divers tubes de diamètres différents ou avec des appâts variés (Asticots ou beurre de cacahuète).
Dans les ouvrages suivis, les tubes sont posés le long des différents cheminements et aux abords des ouvrages de part et d’autre et sur chaque rive.
Les analyses génétiques sont réalisées à partir de pools de poils par sondage qui dépendent des protocoles des études. Le nombre d’analyses génétiques par point de sondage peut donc varier d’un sondage à l’autre.
DOI: 10.15468/hk9jzq
title: Diagnostic écologique et suivi du Marais des Ragouillis et Bois de Touchaud (Montreuil-Bonnin, 86) [COSEA-LISEA, VIENNE NATURE]-Ragouillis 2022

description: Diagnostic d'habitats / Diagnostic écologique et suvi du Marais des Ragouillis et Bois de Touchaud (Montreuil-Bonnin, 86) [financeur COSEA-LISEA, maitre d’œuvre VIENNE NATURE]
DOI: 10.15468/dccq3b
title: Contributions Ext-DURANEL_CENLim

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/rcphgs
title: ZNIEFF_NE17

description: Inventaires floristiques dans le cadre de l'actualisation des ZNIEFF en 17
DOI: 10.18465/840b0301-87f3-4081-aecd-ed8004b705db
title: MNT Turballe 2023

description: Modèle Numérique de Terrain obtenu par LiDAR sur la côte ligérienne au niveau de la Turballe
DOI: 10.18465/070b6392-e218-42c7-83a4-1b5e7decbc2b
title: MNS Turballe 2023

description: Modèle Numérique de Surface obtenu par LiDAR sur la côte ligérienne au niveau de la Turballe
DOI: 10.15468/7wjsj6
title: Contributions Ext-CPIECorrèze_ambroisie

description: {"SUPPORT":"CD-ROM"} / Ensemble des données collectées hors CBNMC
DOI: 10.13026/cpeg-7b46
title: Respiratory and heart rate monitoring dataset from aeration study

description: A study was conducted to collect respiratory pressure and flow data for model-
based assessment, alongside electrical impedance tomography (EIT) aeration,
electrocardiogram (ECG), and heart-rate belt (HRB) data. A 20 subjects set was
selected with no known significant respiratory abnormalities, under University
of Canterbury Human Research Ethics Committee (HREC) consent (HREC 2023/30/LR-
PS). Subject demographic data was collected using a combination of
measurements and a self-reported questionnaire. Subject demographic
information to ascertain: sex; height; weight; age; any history of asthma,
smoking, or vaping; and approximate thoracic cage and breast tissue volumes.
The trial was setup with subjects breathing through the pressure and flowmeter
using a full-face mask and filter. Inspiratory and expiratory flow were
separated using one-way valves for measurement purposes and both ports were
rapidly occluded every 200ms to generate passive mechanics assessment
intervals. A continuous positive airway pressure (CPAP) machine was used to
provide positive airway pressure (PEEP) in series with the inspiratory port.
Three trials were conducted per subject. Two of which, involved increasing
PEEP (0, 4, and 8 cmH2O), and in one of which subjects were asked to perform
two 10s breath holds at each level. The third was a recording of three forced
expiratory manoeuvres (FEM). These tests were conducted to provide an initial
comparison of current respiratory techniques to model-based methods, which
aims to inform the design of future clinical testing on subjects with known
respiratory abnormalities.
DOI: 10.13026/e4dt-f689
title: Respiratory and heart rate monitoring dataset from aeration study

description: A study was conducted to collect respiratory pressure and flow data for model-
based assessment, alongside electrical impedance tomography (EIT) aeration,
electrocardiogram (ECG), and heart-rate belt (HRB) data. A 20 subjects set was
selected with no known significant respiratory abnormalities, under University
of Canterbury Human Research Ethics Committee (HREC) consent (HREC 2023/30/LR-
PS). Subject demographic data was collected using a combination of
measurements and a self-reported questionnaire. Subject demographic
information to ascertain: sex; height; weight; age; any history of asthma,
smoking, or vaping; and approximate thoracic cage and breast tissue volumes.
The trial was setup with subjects breathing through the pressure and flowmeter
using a full-face mask and filter. Inspiratory and expiratory flow were
separated using one-way valves for measurement purposes and both ports were
rapidly occluded every 200ms to generate passive mechanics assessment
intervals. A continuous positive airway pressure (CPAP) machine was used to
provide positive airway pressure (PEEP) in series with the inspiratory port.
Three trials were conducted per subject. Two of which, involved increasing
PEEP (0, 4, and 8 cmH2O), and in one of which subjects were asked to perform
two 10s breath holds at each level. The third was a recording of three forced
expiratory manoeuvres (FEM). These tests were conducted to provide an initial
comparison of current respiratory techniques to model-based methods, which
aims to inform the design of future clinical testing on subjects with known
respiratory abnormalities.
DOI: 10.15468/v26qvp
title: Projet de construction et d’exploitation de deux nouvelles unités de production d’électricité de type EPR2 et de leurs ouvrages de raccordement électrique sur le site de Penly.-PEN_HALIEUTIQUE_CHALUT_CANADIEN

description: Données halieutiques (chalut canadien)
DOI: 10.18465/c580b9ba-197c-48a6-a9aa-8390d84d2a42
title: MNS Piriac 2023

description: Modèle Numérique de Surface obtenu par LiDAR sur la côte ligérienne au niveau de Piriac
DOI: 10.15468/g3bb23
title: Projet Photovoltaïque de Joeuf-DonneesBrutesBiodiversite_20_055

description: Données faunistiques et floristiques de l'étude d'impact
DOI: 10.5281/zenodo.10607083
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors
title: Long-read validation of exon in osteosarcoma

description: Long-read iso-seq validation of exon regions:

Methods of the Long-read Sequencing:

Libraries for each tumor were prepared and sequencing on a Pacific Biosciences (PacBio) RSII instrument at JAX. The raw data files were processed according to the PacBio Isoseq3 pipeline which utilizes a number of command line tools provided in PacBio SMRT Tools v10.2 (https://www.pacb.com/support/software-downloads/). 

The pipeline generates non-redundant full-length (FL) transcripts in the following steps for each tumor sample: (i) compute consensus sequences and read quality, (ii) remove primers and adapters, (iii) remove polyA tail and artificial concatemers, (iii) de novo isoform-level clustering, (iv) minimap2 aligns FL transcripts to human reference (GENCODEv40), (v) transcripts were collapsed based on genomic mapping, long-read abundance was estimated, and GTF annotation file generated, (vi) SQANTI3 performed transcript classification and created both a reference corrected transcriptome fasta file and a corrected GTF file for each tumor. 

 

Gene target exon PSI value calculation:

The “generateEvents” operation from SUPPA2v2.3 (https://github.com/comprna/SUPPA) was used to extract splice sites from each tumor GTF, next “psiPerEvent” operation was applied to calculate Percent Spliced In (PSI) statistic for each alternative splice site using Kallisto estimated transcript abundance values. Gene target exons of interest were selected from output tables using an absolute splice site genomic coordinate match.

Please contact Dr Ching Lau for additional inquiries (ching.lau@jax.org).
DOI: 10.5281/zenodo.10607084
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors
DOI: 10.5281/zenodo.10607288
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors
DOI: 10.5281/zenodo.10783179
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors

description: Contains GTF file used in the mapping
DOI: 10.5281/zenodo.10783329
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors

description: Example Exon quantification of Pediatric and Normal tissues.
DOI: 10.5281/zenodo.10783398
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors

description: GTF Reference File
DOI: 10.5281/zenodo.10844897
title: Files From The Exon Analysis Pipeline of Pediatric Solid Tumors
title: Long-read validation of exon in osteosarcoma

description: Long-read iso-seq validation of exon regions:

Methods of the Long-read Sequencing:

Libraries for each tumor were prepared and sequencing on a Pacific Biosciences (PacBio) RSII instrument at JAX. The raw data files were processed according to the PacBio Isoseq3 pipeline which utilizes a number of command line tools provided in PacBio SMRT Tools v10.2 (https://www.pacb.com/support/software-downloads/). 

The pipeline generates non-redundant full-length (FL) transcripts in the following steps for each tumor sample: (i) compute consensus sequences and read quality, (ii) remove primers and adapters, (iii) remove polyA tail and artificial concatemers, (iii) de novo isoform-level clustering, (iv) minimap2 aligns FL transcripts to human reference (GENCODEv40), (v) transcripts were collapsed based on genomic mapping, long-read abundance was estimated, and GTF annotation file generated, (vi) SQANTI3 performed transcript classification and created both a reference corrected transcriptome fasta file and a corrected GTF file for each tumor. 

 

Gene target exon PSI value calculation:

The “generateEvents” operation from SUPPA2v2.3 (https://github.com/comprna/SUPPA) was used to extract splice sites from each tumor GTF, next “psiPerEvent” operation was applied to calculate Percent Spliced In (PSI) statistic for each alternative splice site using Kallisto estimated transcript abundance values. Gene target exons of interest were selected from output tables using an absolute splice site genomic coordinate match.

Please contact Dr Ching Lau for additional inquiries (ching.lau@jax.org).
DOI: 10.15468/x5b4kg
title: Contributions Ext-BEWR_InvAggloLimoges

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/qwqpaa
title: Contributions Ext-2020_04_04_DUBOC

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.18465/1e7c6d08-f1f1-4430-b972-598c013dc2a3
title: MNT Piriac 2023

description: Modèle Numérique de Terrain obtenu par LiDAR sur la côte ligérienne au niveau de Piriac
DOI: 10.21966/r603-b338
title: Northwest Calvert sea wrack temporal data, Central Coast, British Columbia (2016-2017)
title: Données temporelles sur les wacks de mer du Nord-Ouest, côte centrale, Colombie-Britannique (2016-2017)

description: This dataset contains the collection site locations, visit dates, and weights of each species of shore cast algae or seagrass found during each site visit.

Dead, shore-cast seaweeds and seagrasses (commonly called sea wrack) provide an important vector of marine-derived nutrients to low productivity terrestrial environments, such as beaches. However, little is known about the processes that facilitate wrack transport, deposition, and accumulation in coastal temperate British Columbia. Throughout the course of one year, I visited three sites on a bi-monthly basis to document temporal changes in wrack biomass and species composition. At each site, wrack was measured along 12 permanent 1-meter wide belt-transects. The transects ran perpendicular to the water's edge, originating at the forest-beach interface and extending to the ocean at low tide. I found wrack biomass to be similar throughout all four seasons, wrack species composition, however, varied. My results suggest sea wrack is a consistent vector of potential nutrients from the marine to the terrestrial environment in British Columbia. Detailed methods and conclusions in the MSc thesis found in the linked folder.

Sara Wickham – University of Victoria, Brian Starzomski – University of Victoria; John Reynolds – Simon Fraser University; Chris Darimont – University of Victoria
description: Ce jeu de données contient les emplacements des sites de collecte, les dates de visite et le poids de chaque espèce d'algues ou d'herbiers marins trouvés au cours de chaque visite du site.

Les algues marines mortes et les herbiers marins (communément appelés herbiers marins) fournissent un vecteur important de nutriments dérivés de la mer dans les environnements terrestres à faible productivité, tels que les plages. Cependant, on sait peu de choses sur les processus qui facilitent le transport, le dépôt et l'accumulation des wacks dans la région tempérée côtière de la Colombie-Britannique. Au cours d'une année, j'ai visité trois sites tous les deux mois pour documenter les changements temporels de la biomasse des wacks et de la composition des espèces. À chaque site, la wack a été mesurée le long de 12 transects permanents de 1 mètre de large. Les transects s'étendaient perpendiculairement au bord de l'eau, partant de l'interface forêt-plage et se prolongeant jusqu'à l'océan à marée basse. J'ai constaté que la biomasse des wacks était similaire au cours des quatre saisons, mais que la composition des espèces variait. Mes résultats suggèrent que le wack marin est un vecteur constant de nutriments potentiels du milieu marin au milieu terrestre en Colombie-Britannique. Méthodes détaillées et conclusions de la thèse de maîtrise trouvée dans le dossier lié.

Sara Wickham — Université de Victoria, Brian Starzomski — Université de Victoria ; John Reynolds — Université Simon Fraser ; Chris Darimont — Université de Victoria
DOI: 10.15468/xt4zdf
title: Contributions Ext-MICOUX_2017_87

description: {"SUPPORT":"Papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.18465/2ab5c44e-ceae-4a16-836c-24e0bdcb1ee1
title: MNS Pont-Mahé 2023

description: Modèle Numérique de Surface obtenu par LiDAR sur la côte ligérienne et morbihannaise au niveau de Pont-Mahé
DOI: 10.15468/6vxneu
title: Projet d'acquisition : CEN_Virvée-Inventaire à l'aide de tubes capteurs de fèces

description: Inventaires à l’aide de tubes capteurs de fèces et analyse génétique des fèces par séquençage à haut débit du gène CO1 (Analyses réalisées par le labo GeCoLab de l’Université de liège – DR Johan Michaux) – Me demander si besoin de plus de précisions sur la méthodologie génétique.
Les tubes sont posés dans le milieu naturel sur des lignes de 100 m à raison d’une station de pose tous les 10 m regroupant tubes à poils et tubes à fèces.
Dans les ouvrages suivis, les tubes sont posés le long des différents cheminements et aux abords des ouvrages de part et d’autre et sur chaque rive.
Les analyses génétiques sont réalisées à partir de pools de fèces par sondage, qui dépendent des protocoles des études. Le nombre d’analyses génétiques par point de sondage peut donc varier d’un sondage à l’autre.
DOI: 10.15468/a64f87
title: Projet d'acquisition : Ballion-Inventaire à l'aide de tubes capteurs de fèces

description: Inventaires à l’aide de tubes capteurs de fèces et analyse génétique des fèces par séquençage à haut débit du gène CO1 (Analyses réalisées par le labo GeCoLab de l’Université de liège – DR Johan Michaux) – Me demander si besoin de plus de précisions sur la méthodologie génétique.
Les tubes sont posés dans le milieu naturel sur des lignes de 100 m à raison d’une station de pose tous les 10 m regroupant tubes à poils et tubes à fèces.
Dans les ouvrages suivis, les tubes sont posés le long des différents cheminements et aux abords des ouvrages de part et d’autre et sur chaque rive.
Les analyses génétiques sont réalisées à partir de pools de fèces par sondage, qui dépendent des protocoles des études. Le nombre d’analyses génétiques par point de sondage peut donc varier d’un sondage à l’autre.
DOI: 10.15468/4tpx27
title: Dépose canalisation 5'' tubing - complément-Complément espèces flore protégée

description: complément d'inventaire des espèces de flore protégée
DOI: 10.15468/c2gv7t
title: Elaboration du Document d'Objectifs du site Natura 2000 : FR7200667 - Coteaux calcaires de la vallée de la Vézère-Cartographie des habitats du site Natura 2000 : FR7200667 - Coteaux calcaires de la vallée de la Vézère

description: Données phytosociologiques collectées pour la caractérisation et la cartographie des habitats dans le cadre de la réalisation du document d'objectifs du site Natura 2000 FR7200667 Coteaux calcaires de la vallée de la Vézère
DOI: 10.15468/xfpbq2
title: Elaboration du Document d'Objectifs du site Natura 2000 : FR7200663 - Vallée de la Nizonne-Cartographie des habitats du site Natura 2000 : FR7200663 - Vallée de la Nizonne

description: Cartographie des habitats du site Natura 2000 : FR7200663 - Vallée de la Nizonne
DOI: 10.15468/62ctnp
title: Centrale éolienne des Fontennelles-23118608_DEPOBIO_CLOUE_COULOMBIERS_86

description: Données biodiversité du projet éolien de Fontennelles (dont données biblio remises à jour en 2021)
DOI: 10.15468/56bqqw
title: Contributions Ext-Lot-Nature

description: SUPPORT: Papier
CONTENU: Données floristiques sur le Sud Corrèze
DOI: 10.15468/mjmzmn
title: Contributions Ext-CENLimousin_fevrier2014

description: SUPPORT: papier
CONTENU: Données flore
COMMENTAIRES: Transmis par mail àThierry Vergne
DOI: 10.15468/5da745
title: Contributions Ext-DUFEU_CL78

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/df2t5h
title: Diagnostic de la Prairie de Moquerat et des nouvelles parcelles acquises en 2021 à Moquerat - la Bouleure-Moquerat 2022 - Relevés phytosociologiques

description: Relevés phytosociologiques pour caractériser les habitats
DOI: 10.15468/z73uyj
title: Contributions Ext-CBNFC_inventaireLimousin

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/8dytbs
title: F-FCBN-16-5-N_FCBN Appui EDF et partenariat FCEN

description: N_FCBN Appui EDF et partenariat FCEN
DOI: 10.15468/rkzwj3
title: Contributions Ext-NOUHAUD_Flore

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/rxkpgt
title: Regroupement de données phytosociologiques collectées par Bruno DE FOUCAULT-Données collectées par DE FOUCAULT pendant sa thèse sur les plaines atlantiques de 1984

description: Thèse sur les plaines atlantiques en 1984
DOI: 10.15468/fcxbwp
title: Contributions Ext-RATEL_oct2015

description: {"SUPPORT":"Papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/7q3mdc
title: Contributions Ext-2019_24_05_Dufeu_relpapier

description: {"SUPPORT":"papier"} / Ensemble des données collectées hors CBNMC
DOI: 10.15468/tycb56
title: Programme CarHab des Pyrénées-Atlantiques 2020-2021-Terrain Carhab des Pyrénées-Atlantiques 2020-2021

description: Terrain de validation de la première version de la cartographie des biotopes menée par le CBN Sud-Atlantique. Recensement de données d'espèces et de syntaxons afin de déterminer le biotope.
DOI: 10.15468/jdcds5
title: Contributions Ext-2020_12_jourde_rémi

description: SUPPORT: Numérique
COMMENTAIRES: Saisie en ligne
DOI: 10.15468/9zbq9z
title: Contributions Ext-GUERBAA_avril2013

description: SUPPORT: Papier
COMMENTAIRES: Transmis par Laurent CHABROL
DOI: 10.15468/g6f5bk
title: Inventaire des zones humides dans le cadre du CTMA Negron [SEPANT, VIENNE NATURE]-CTMA Négron - 2022

description: Inventaire des zones humides dans le cadre du CTMA Négron