cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10081784
title: High synchrony of tree growth is followed by a uniform pattern of de-synchronization
title: Growth asynchrony in forest trees

description: Aim: Growth asynchrony in trees increases deviation in the average of forest growth and, consequently, brings uncertainty in modeling forest productivity and other functions. Despite recognition of growth variability among trees, the process of asynchronous growth and its ecological implications are poorly understood. Here we used tree-ring data to show that, although forest growth is influenced by climatic factors, inter-annual growth changes of individual trees often do not respond in a synchronous manner.
Location: China.
Time period: The past five and a half centuries.
Major taxa studied: Forest tree growth.
Methods: We used tree-ring methods and tree-ring data obtained from increment core samples in 1046 juniper trees at 32 sites and 538 pine trees at 20 sites to explore the implications of growth asynchrony in maintaining forest stability in the face of environmental fluctuations.
Results: After highly synchronous growth events, the number of trees keeping continuous growth synchrony declined progressively and, notably, in a relatively uniform pattern.
Main conclusions: We argue that diverse rather than synchronized growth spreads the capacity of trees to respond to disturbances and stresses at the individual level, consequently enhances forest resilience to risks of climate uncertainty. This resilience-acquisition strategy is an inherent and an adaptive property of forest tree growth that is similar to maintaining a diversified financial investment portfolio. This new perspective on widespread asynchronous tree growth sheds insight into assessment of forest health risks under future climate change.
DOI: 10.25403/upresearchdata.24486493
title: Participatory action research study of group music therapy with musicians using arts-based research and thematic analysis

description: Dataset for a participatory action research study. Twelve open group music therapy sessions were conducted with a total of twelve musicians over the course of twelve weeks. Initially a "map" of sessions was created in order to get a sense of the process as a whole, and also common themes and processes that emerged across sessions. Thematic analysis was done on all twelve of the transcripts that were transcribed verbatim.
DOI: 10.7488/ds/3852
title: Riboflavin-Vancomycin Conjugate Enables Simultaneous Antibiotic Photo-Release and Photodynamic Killing against Resistant Gram-Positive Pathogens

description: This dataset was used in the analysis of a new light-activated molecule, VanB2, based on conjugation of the FDA-approved photosensitizer riboflavin to the Gram-positive specific ligand vancomycin for targeted antimicrobial photodynamic therapy. The riboflavin-vancomycin conjugate proved to be a potent and versatile antibacterial agent, enabling the rapid, light-mediated, killing of MRSA and VRE with no significant off-target effects. The attachment of riboflavin on vancomycin also led to an increased in antibiotic activity against S. aureus and VRE. Simultaneously, we evidenced that the flavin sub-unit undergoes an efficient photo-induced bond cleavage reaction to release vancomycin, thereby acting as a photo-removable protecting group for drug-delivery. This dataset is related to the upcoming article "Riboflavin-Vancomycin Conjugate Enables Simultaneous Antibiotic Photo-Release and Photodynamic Killing against Resistant Gram-Positive Pathogens" by B. Mills, A. Kiang, S. M. P. C. Mohanan, M. Bradley, K. Dhaliwal and M. Klausen (submitted to ChemRxiv).
DOI: 10.6084/m9.figshare.21314016.v2
title: Comparing the isotopic and molecular composition of dissolved organic carbon between the oligotrophic South China Sea and the north Pacific Ocean: signals of biodegradation, conservative mixing, and terrestrial input

description: This data set contains: 1)the sampling information and DOC concentrations of the samples; 2) statistics of DOC concentrations, SPE-DOC concentrations, SPE-DOC Δ14C values, SPE-DOC δ13C values, and carbon extraction efficiencies determined for samples from stations F2 and DC6; 3)Molecular characteristics of DOM throughout two water columns at stations F2 and DC6, including the relative abundance of different compound groups and intensity-weighted indices.
DOI: 10.5281/zenodo.10078711
title: Behavior-relevant top-down cross-modal predictions in mouse neocortex

description: Simultaneously recorded S1 and PPC neuronal population activity from awake mice during a texture discrimination task. Data acquired with two-photon calcium imaging.
DOI: 10.5281/zenodo.10078712
title: Behavior-relevant top-down cross-modal predictions in mouse neocortex

description: Simultaneously recorded S1 and PPC neuronal population activity from awake mice during a texture discrimination task. Data acquired with two-photon calcium imaging.
DOI: 10.5281/zenodo.10081677
title: Dataset for UNEP-v1

description: Dataset for the paper: General-purpose machine-learned potential for 16 elemental metals and their alloys
UNEP-v1 = version 1 of Unified NeuroEvolution Potential as implemented in GPUMD (https://gpumd.org/)
Full training data:

1-component.zip: all the 1-component training data in extended XYZ format
2-component.zip: all the 2-component training data in extended XYZ format
Trained models that can be used out of the box:

UNEP-v1-model-without-ZBL.txt: The NEP model without adding ZBL
UNEP-v1-model-with-ZBL.txt: The NEP model with ZBL
Sample input files:

nep.in: Input file of GPUMD for NEP training
INCAR: Input file of VASP for single-point DFT calculations
DOI: 10.57841/casdc.0003089
title: 新型苯并三氮唑功能化离子液体的缓蚀与摩擦学行为研究
DOI: 10.57841/casdc.0003090
title: 球轴承多体弹性流体动力润滑研究
DOI: 10.5281/zenodo.7997920
title: Otvorene prístupné informačné zdroje vo vedeckej komunikácii: dostupnosť, citovanosť, využívanie (dataset)

description: Súbory dát vo formáte .xls k bibliometrickým analýzam v článku Harvát, Matej (2023). Otvorene prístupné informačné zdroje vo vedeckej komunikácii: dostupnosť, citovanosť, využívanie. In ITlib, špeciál, s. 5-25.
Dáta o publikačnom režime OA / N-OA sú extrahované z WoS, následne overované a upravené. Súbory podľa disciplín obsahujú dáta k 20 najcitovanejším publikáciám z jednotlivých disciplín podľa WoS.
Jeden dataset obsahuje údaje z Google Scholar o podiele OA vs. N-OA článkov v rámci 4 vybraných hybridných časopisov.
DOI: 10.5281/zenodo.7997921
title: Otvorene prístupné informačné zdroje vo vedeckej komunikácii: dostupnosť, citovanosť, využívanie (dataset)

description: Súbory dát vo formáte .xls k bibliometrickým analýzam v článku Harvát, Matej (2023). Otvorene prístupné informačné zdroje vo vedeckej komunikácii: dostupnosť, citovanosť, využívanie. In ITlib, špeciál, s. 5-25.
Dáta o publikačnom režime OA / N-OA sú extrahované z WoS, následne overované a upravené. Súbory podľa disciplín obsahujú dáta k 20 najcitovanejším publikáciám z jednotlivých disciplín podľa WoS.
Jeden dataset obsahuje údaje z Google Scholar o podiele OA vs. N-OA článkov v rámci 4 vybraných hybridných časopisov.
DOI: 10.5517/ccdc.csd.cc2gt1q2
title: CCDC 2288194: Experimental Crystal Structure Determination

description: Related Article: Zheng-Hui Hu, Xin-Yu Liu, Shu-Qi Sun, Chen Gong, Nuo Liu, Ji-Xing Gao|2023|J.Mater.Chem.C|11|13675|doi:10.1039/D3TC02873A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gtb5t
title: CCDC 2288456: Experimental Crystal Structure Determination

description: Related Article: Hai-Ning Zhang, Guo-Xin Jin|2023|Angew.Chem.,Int.Ed.|62|e202313605|doi:10.1002/anie.202313605
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv68t
title: CCDC 2289296: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv69v
title: CCDC 2289297: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv6cx
title: CCDC 2289299: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv6dy
title: CCDC 2289300: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv6fz
title: CCDC 2289301: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gv6g0
title: CCDC 2289302: Experimental Crystal Structure Determination

description: Related Article: Jan-Erik Siewert, André Schumann, Tim Wellnitz, Fabian Dankert, Christian Hering-Junghans|2023|Dalton Trans.|52|15747|doi:10.1039/D3DT02690F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5287/bodleian:vg79rpo0o
title: Supporting dataset for Generalised adaptive optics method for high-NA aberration-free refocusing in refractive-index-mismatched media
DOI: 10.26300/bmr7-sd49
title: Code for "A data harmonization project of three large prospective cardiovascular health-focused cohorts"
DOI: 10.5287/bodleian:goe6dvp97
title: Supporting dataset for SenAOReFoc: A Closed-Loop Sensorbased Adaptive Optics and Remote Focusing Control Software
DOI: 10.6084/m9.figshare.17151238
title: Morphological change detection along the shoreline of Karachi, Pakistan using 50 year time series satellite remote sensing data and GIS techniques

description: Changes taking place along the shoreline are attributed to several physical and dynamical processes. Sindh Coast of Pakistan particularly Karachi is continuously under the process of morphological changes due to anthropogenic activities and natural processes. This study examined spatiotemporal morphological changes over five decades (1972–2020) along Karachi Coast bordering Arabian Sea using SRS and GIS techniques. This study reveals major morphological changes along the shoreline of Karachi in the vicinity of Karachi Port, Clifton Beach, Bundal Island and Port Qasim, which have been calculated in the form of erosion and accretion using erase tool of ArcGIS software. Quantitative analysis shows highest accretion of &gt;15.50 km<sup>2</sup>, at the Eastern End of Clifton Beach due to human intervention. Natural processes caused major erosion (10.95 km<sup>2</sup>) and accretion (19.50 km<sup>2</sup>) during 1972–2020 in the vicinity of Bundal Island. During 2011–2020, significant change (2.40 km<sup>2</sup>) is observed opposite to Port Qasim causing damage to mangrove vegetation of 1.40 km<sup>2</sup> calculated using NDVI. Highest rate of erosion (0.31 km<sup>2</sup>year<sup>−1</sup>) and highest rate of accretion (0.70 km<sup>2</sup>year<sup>−1</sup>) are found in Bundal Island during 1972–1987 and 1987–1999, respectively. Maximum increase in the length of shoreline (6.78 km) is depicted at Eastern End of Clifton Beech between 1999–2010.
DOI: 10.6084/m9.figshare.14806369.v1
title: Spatial variation in household-level risk to natural hazards across the coast of Bangladesh

description: People’s vulnerability, exposure and capacity are key components of a risk assessment. Index-based methodologies have proved useful to document spatial variation in risk-controlling factors. The objective of this study is to propose a methodology to derive quantitative indicators of household vulnerability, exposure and capacity to assess household’s risk and its spatial variation. The method is applied to six unions of the coastal region of Bangladesh, including three offshore islands. Field data are collected by questionnaire survey of 609 households and 6 focus group discussions. Using conventional data conversion and aggregation methods and principle component analysis (PCA), the variables are summarized into a small set of dimensions to derive vulnerability and capacity scores. Result shows that households of islands are generally more vulnerable to natural hazards than nearby onshore unions. Unions of the central coast of Bangladesh are characterized by households with higher vulnerability and lower capacities than two other parts. The fatality rate of cyclone SIDR at village level is used to validate the spatial variation of household risk for one surveyed union. The proposed methodology and produced maps could support national to local government bodies in assessing household risk and identifying locations where to implement specific risk reduction measures.
DOI: 10.6084/m9.figshare.17151238.v1
title: Morphological change detection along the shoreline of Karachi, Pakistan using 50 year time series satellite remote sensing data and GIS techniques

description: Changes taking place along the shoreline are attributed to several physical and dynamical processes. Sindh Coast of Pakistan particularly Karachi is continuously under the process of morphological changes due to anthropogenic activities and natural processes. This study examined spatiotemporal morphological changes over five decades (1972–2020) along Karachi Coast bordering Arabian Sea using SRS and GIS techniques. This study reveals major morphological changes along the shoreline of Karachi in the vicinity of Karachi Port, Clifton Beach, Bundal Island and Port Qasim, which have been calculated in the form of erosion and accretion using erase tool of ArcGIS software. Quantitative analysis shows highest accretion of &gt;15.50 km<sup>2</sup>, at the Eastern End of Clifton Beach due to human intervention. Natural processes caused major erosion (10.95 km<sup>2</sup>) and accretion (19.50 km<sup>2</sup>) during 1972–2020 in the vicinity of Bundal Island. During 2011–2020, significant change (2.40 km<sup>2</sup>) is observed opposite to Port Qasim causing damage to mangrove vegetation of 1.40 km<sup>2</sup> calculated using NDVI. Highest rate of erosion (0.31 km<sup>2</sup>year<sup>−1</sup>) and highest rate of accretion (0.70 km<sup>2</sup>year<sup>−1</sup>) are found in Bundal Island during 1972–1987 and 1987–1999, respectively. Maximum increase in the length of shoreline (6.78 km) is depicted at Eastern End of Clifton Beech between 1999–2010.
DOI: 10.6084/m9.figshare.14806369
title: Spatial variation in household-level risk to natural hazards across the coast of Bangladesh

description: People’s vulnerability, exposure and capacity are key components of a risk assessment. Index-based methodologies have proved useful to document spatial variation in risk-controlling factors. The objective of this study is to propose a methodology to derive quantitative indicators of household vulnerability, exposure and capacity to assess household’s risk and its spatial variation. The method is applied to six unions of the coastal region of Bangladesh, including three offshore islands. Field data are collected by questionnaire survey of 609 households and 6 focus group discussions. Using conventional data conversion and aggregation methods and principle component analysis (PCA), the variables are summarized into a small set of dimensions to derive vulnerability and capacity scores. Result shows that households of islands are generally more vulnerable to natural hazards than nearby onshore unions. Unions of the central coast of Bangladesh are characterized by households with higher vulnerability and lower capacities than two other parts. The fatality rate of cyclone SIDR at village level is used to validate the spatial variation of household risk for one surveyed union. The proposed methodology and produced maps could support national to local government bodies in assessing household risk and identifying locations where to implement specific risk reduction measures.
DOI: 10.6084/m9.figshare.19182086.v3
title: CyclOps pathway and photoreceptors in Fungi and supplementary Immunofluorescence micrographs of fungal zoospores

description: Alignment datasets and trees for the CyclOps and BeCNG1 proteinsTrees and aligned datasets used for phylogenetic reconstruction of the CyclOps pathway in Fungi.Table of photoreceptors and retinal synthesis genes.Supplementary Immunofluorescence micrographs of four species of fungal zoospores.<br>
DOI: 10.5281/zenodo.6412376
title: Annotated genomes of Pseudomonas spp. isolated from wild and cultivated cranberry bogs

description: <em>Pseudomonas</em> spp. were isolated from rhizospheres of wild and cultivated cranberry bogs in southeastern Massachusetts. Genomes were translated and annotated.
DOI: 10.5281/zenodo.6412375
title: Annotated genomes of Pseudomonas spp. isolated from wild and cultivated cranberry bogs

description: <em>Pseudomonas</em> spp. were isolated from rhizospheres of wild and cultivated cranberry bogs in southeastern Massachusetts. Genomes were translated and annotated.
DOI: 10.6084/m9.figshare.19514272
title: The Nencki-Symfonia EEG/ERP dataset

description: <b>Dataset: </b>http://doi.org/10.5524/100990<br><b>Open-access article that describes the dataset:</b> https://doi.org/10.1093/gigascience/giac015<br>One of the primary goals of neuropsychology is to understand the brain mechanisms underlying various aspects of attention and cognitive control. Several tasks have been developed as a part of this body of research, however their results are not always consistent. A reliable comparison of the data and a synthesis of study conclusions has been precluded by multiple methodological differences. Here, we describe a publicly available, high-density electroencephalography (EEG) dataset obtained at the Nencki Institute of Experimental Biology from a sample of 42 healthy young adults while they performed three cognitive tasks: (1) an extended Multi-Source Interference Task (MSIT+) with control, Simon, Flanker, and multi-source interference trials; (2) a 3-stimuli oddball task with frequent standard, rare target, and rare distractor stimuli; (3) a control, simple reaction task (SRT); and additionally (4) a resting-state protocol (REST). Basic demographic and psychometric information are included within the dataset (including The Amsterdam Resting-state Questionnaire (ARSQ) and UWIST Mood Adjective Check List questionnaires).<br><br><b>Please cite the source, when this data is used:<br>Dzianok P, Antonova I, Wojciechowski J, Dreszer J, Kublik E. The Nencki-Symfonia electroencephalography/event-related potential dataset: Multiple cognitive tasks and resting-state data collected in a sample of healthy adults. Gigascience. 2022;11:giac015. doi:10.1093/gigascience/giac015</b>
DOI: 10.6084/m9.figshare.19514272.v1
title: The Nencki-Symfonia EEG/ERP dataset

description: <b>Dataset: </b>http://doi.org/10.5524/100990<br><b>Open-access article that describes the dataset:</b> https://doi.org/10.1093/gigascience/giac015<br>One of the primary goals of neuropsychology is to understand the brain mechanisms underlying various aspects of attention and cognitive control. Several tasks have been developed as a part of this body of research, however their results are not always consistent. A reliable comparison of the data and a synthesis of study conclusions has been precluded by multiple methodological differences. Here, we describe a publicly available, high-density electroencephalography (EEG) dataset obtained at the Nencki Institute of Experimental Biology from a sample of 42 healthy young adults while they performed three cognitive tasks: (1) an extended Multi-Source Interference Task (MSIT+) with control, Simon, Flanker, and multi-source interference trials; (2) a 3-stimuli oddball task with frequent standard, rare target, and rare distractor stimuli; (3) a control, simple reaction task (SRT); and additionally (4) a resting-state protocol (REST). Basic demographic and psychometric information are included within the dataset (including The Amsterdam Resting-state Questionnaire (ARSQ) and UWIST Mood Adjective Check List questionnaires).<br><br><b>Please cite the source, when this data is used:<br>Dzianok P, Antonova I, Wojciechowski J, Dreszer J, Kublik E. The Nencki-Symfonia electroencephalography/event-related potential dataset: Multiple cognitive tasks and resting-state data collected in a sample of healthy adults. Gigascience. 2022;11:giac015. doi:10.1093/gigascience/giac015</b>
DOI: 10.5519/qd.9nr9kgx6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5281/zenodo.6412450
title: Data for A Locally Activatable Sensor for Robust Quantification of Organellar Glutathione

description: Supporting data to paper A Locally Activatable Sensor for Robust Quantification of Organellar Glutathione, including NMR, MS, microscopy, etc
DOI: 10.5281/zenodo.6412449
title: Data for A Locally Activatable Sensor for Robust Quantification of Organellar Glutathione

description: Supporting data to paper A Locally Activatable Sensor for Robust Quantification of Organellar Glutathione, including NMR, MS, microscopy, etc