cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/pr00004915
title: Predicting Individuals' Probability of Response to Smoking Cessation Pharmacotherapy

description: Approximately 16% of adults in the United States are current tobacco smokers and the health effects are extremely costly. Though several Food and Drug Administration (FDA)-approved smoking cessation pharmacotherapies exist [e.g., varenicline, bupropion, nicotine replacement therapy (NRT)], utilization rates remain low and a substantial portion of smokers do not respond to existing treatments. Fewer than half of smokers who make a quit attempt use an evidence-based medication. The most effective single medication to-date, varenicline, results in abstinence at treatment completion for approximately 35-50% of smokers, but only 14% of smokers who make a quit attempt use a prescription medication like varenicline. The gold standard method (randomized controlled trial; RCT) for evaluating efficacy of smoking cessation medications provides information about the effect of the medication at the population-level. However, traditional RCTs are not able to provide an individual smoker with an estimate of their probable treatment response. Our goal is to develop and test an algorithm, based on demographic and clinical data assessed prior to treatment, to estimate individual smokers’ likely response to FDA-approved pharmacotherapies for smoking cessation, including varenicline, bupropion, and nicotine replacement therapy (NRT). This will aid in treatment recommendations for smokers and potentially increase medication-aided smoking cessation attempts.
DOI: 10.15468/dl.zdvnpz
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allosmerus elongatus (Ayres, 1854)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038592-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnk67u
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oreocharis mileensis (W.T.Wang) Mich.Möller & A.Weber"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038593-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y452tg
title: Occurrence Download

description: A dataset containing 3326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysionotus pauciflorus Maxim."
 ]
}

 The dataset includes 3326 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038594-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0004250
title: 110份小麦自然群体转录组数据
DOI: 10.5281/zenodo.14511960
title: Functional Ultrasound Imaging of Auditory Responses in Comatose Patients

description: The raw data for the paper "Functional Ultrasound Imaging of Auditory Responses in Comatose Patients".
DOI: 10.25919/n47d-nw10
title: A Standard Metadata Template For Representing Rock Specimens

description: This dataset contains a standard template for representing the metadata of rock specimens (e.g., core, microanalysis, hand grab) in the CSIRO Mineral Resources Discovery program. The template includes core properties of samples such as their name, identifier, type, and location, as well as associated metadata such as project, drilling contexts, hazard declaration and physical storage.
The template will be used to catalogue legacy and specimens systematically collected through mineral exploration projects. It has been developed iteratively, revised, and improved based on feedback from researchers and lab technicians. This standardized template can prevent duplicate sample metadata entry and lower metadata redundancy, thereby improving the program's physical sample curation and discovery.
DOI: 10.5281/zenodo.13912721
title: Effects of methane-carbon dioxide replacement on the mechanical characteristics of natural gas hydrate reservoirs

description: “Summary of Mechanical Experiment Parameters.xlsx” file describes all of the mechanical experiment raw data.

“slope.zip” compressed file is the original calculation file for all slope stability calculations.
DOI: 10.5281/zenodo.13912722
title: Effects of methane-carbon dioxide replacement on the mechanical characteristics of natural gas hydrate reservoirs

description: “Summary of Mechanical Experiment Parameters.xlsx” file describes all of the mechanical experiment raw data.

“slope.zip” compressed file is the original calculation file for all slope stability calculations.
DOI: 10.5281/zenodo.14512021
title: Effects of methane-carbon dioxide replacement on the mechanical characteristics of natural gas hydrate reservoirs

description: “Summary of Mechanical Experiment Parameters.xlsx” file describes all of the mechanical experiment raw data.

“slope.zip” compressed file is the original calculation file for all slope stability calculations.
DOI: 10.15468/dl.qme9u5
title: Occurrence Download

description: A dataset containing 1087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gleditsia sinensis Lam."
 ]
}

 The dataset includes 1087 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038596-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26362411.v3
title: The genome annotation files of Acanthopagrus schlegelii

description: This genome annotation mainly includes three aspects: recognition of repeats, gene structure prediction and functional annotation, and prediction of non-coding RNA.
DOI: 10.7274/27923097
title: If You Build It, They Will Come…But Perhaps Not for the Reasons You Think

description: This paper investigates how positions form in an emerging, hybrid field that takes field-making itself as a moral-professional project. I use as a case study the emerging field of peace engineering. I conducted 29 interviews with actors in the field as well as 51 hours of participant-observation at meetings, conferences, and retreats. The main finding is that positions form through an interplay of symbolic opposition and strategic cooperation. A novel finding is that skepticism plays an important role in the emergence of fields by validating its existence and stimulating the articulation of differentiated positions around symbolic boundaries. Finally, the case study suggests that field emergence and settlement may be less stage-based and more fluid than previous research indicates. I propose the concept of an unruly field to capture how the multiple forms of agency at play in an unsettled field thwart and subvert actors’ intentions.
DOI: 10.7274/27923097.v1
title: If You Build It, They Will Come…But Perhaps Not for the Reasons You Think

description: This paper investigates how positions form in an emerging, hybrid field that takes field-making itself as a moral-professional project. I use as a case study the emerging field of peace engineering. I conducted 29 interviews with actors in the field as well as 51 hours of participant-observation at meetings, conferences, and retreats. The main finding is that positions form through an interplay of symbolic opposition and strategic cooperation. A novel finding is that skepticism plays an important role in the emergence of fields by validating its existence and stimulating the articulation of differentiated positions around symbolic boundaries. Finally, the case study suggests that field emergence and settlement may be less stage-based and more fluid than previous research indicates. I propose the concept of an unruly field to capture how the multiple forms of agency at play in an unsettled field thwart and subvert actors’ intentions.
DOI: 10.25345/c53776691
title: MassIVE MSV000096685 - Extracellular vesicles derived from human amniotic fluid stem cells (hAFSC-EVs) protein cargo
title: EVs derived from amniotic fluid stem cells (AFSC-EVs) have previously been shown to modulate VEGF signaling in the glomerulus of Alport Syndrome. We determined that hAFSC-EVs, which are highly enriched with miR-93, can regulate VEGF bioactivity within the glomerulus, VEGFR1 expression, and VEGFR2 activity specifically in GECs through miR-93-5p specific cargo. Here, we performed the proteomics characterization of hAFSC-EV cargo by miR sequencing and proteomics focused on comparing normal EVs vs. miR-93 knock-down EVs (hAFSC-EVsmiR-93-/-). After purifying the EVs, we applied the MPLEx procedure for metabolite/protein/lipid extraction. The protein fraction was solubilized in 50 mM NH4HCO3, 8 M urea, and DTT was added to reach 5 mM. Samples were incubated for 30 minutes at 37 deg C with shaking at 800 rpm. Iodoacetamide was added to reach a final concentration of 400 mM followed by a 60-minute incubation at 37 deg C with shaking at 800 rpm. After a 10-fold dilution in 50 mM NH4HCO3, samples were digested overnight with trypsin (1:50 trypsin:protein ratio) and 1 mM CaCl2. Peptides from copurified proteins were desalted using C18 ultramicrospin columns (3-30 ug capacity; Nest Group), and peptides from AT2 samples were desalted with C18 solid-phase extraction (Strata, 50 mg/mL, Phenomenex). Samples were concentrated and then evaporated using a speedvac to a volume of 25 uL. 5 uL at 0.1 ug/uL were injected into an LC-MS/MS system comprising a Dionex Ultimate 3000 RSLC nanopump (ThermoFisher Scientific) coupled with a Lumos Orbitrap mass spectrometer (ThermoFisher Scientific). Data was processed using MaxQuant (v1.6.0.16).
DOI: 10.6084/m9.figshare.28051457
title: BrGDGT-based proxies and MAATresults

description: BrGDGT-based proxies and MAATresults
DOI: 10.6084/m9.figshare.28051457.v1
title: BrGDGT-based proxies and MAATresults

description: BrGDGT-based proxies and MAATresults
DOI: 10.6084/m9.figshare.28051400
title: Gene lists of the 14 analyzed plasmids.xlsx

description: The classfication of the different Inc group plasmids is based on the similarity of the <i>repA</i> gene in plasmids. Normally, the <i>repA</i> gene in newly collection plasmids is compared with the <i>repA</i> gene in NCBI database. If the similarity of the plasmids is lower than 95% in known Inc group plasmids. The plasmids should be classified into a newly identified Inc group. Through preliminary analysis using second-generation sequencing, 14 plasmids of previously unknown types were identified. These 14 plasmids constitute two novel incompatibility groups, and notably, they harbor a plethora of antibiotic resistance genes. Consequently, both two novel incompatibility groups are jointly included in the analysis. As of now, no genetic linkage between these two novel incompatibility groups has been observed. The overall genome sequences from <i>P. rettgeri</i> PROV114, PROV228, PROV073, PROV252, PROV280, PROV001, PROV050, PROV046, PROV099, PROV024, and PROV175 and <i>Providencia alcalifaciens</i> PROV013 were examined along with pCHS4.1-3 and pM2-1 from Genbank. The 14 plasmids were divided into two Inc groups: IncFII<sub>pPROV114-NR</sub> (newly identified) and Inc<sub>pCHS4.1-3</sub> (newly designated), and a detailed sequence comparison was conducted on the 14 plasmids. Among these 14 plasmids (excluding pPROV114-NR), 45 acquired ARGs were identified, involving resistances to 14 distinct antibiotics and heavy metals.
DOI: 10.6084/m9.figshare.28051415
title: Phylogeography and the population genetic structure of<i> Sorbus alnifolia</i> (Rosaceae) in far east area

description: <i>Sorbus alnifolia</i> (Sieb. et Zucc.) K. Koch, belonging to the genus <i>Sorbus</i> L. within the subfamily Maloideae of the family Rosaceae, is a species with substantial developmental value. It is admired for its leaves, flowers, and fruits, and has excellent wood quality. China is the global distribution center for <i>S. alnifolia</i> resources.
DOI: 10.6084/m9.figshare.28051415.v1
title: Phylogeography and the population genetic structure of<i> Sorbus alnifolia</i> (Rosaceae) in far east area

description: <i>Sorbus alnifolia</i> (Sieb. et Zucc.) K. Koch, belonging to the genus <i>Sorbus</i> L. within the subfamily Maloideae of the family Rosaceae, is a species with substantial developmental value. It is admired for its leaves, flowers, and fruits, and has excellent wood quality. China is the global distribution center for <i>S. alnifolia</i> resources.
DOI: 10.5281/zenodo.14512050
title: Comprehensive Predictive Analytics for Collaborators' Answers, Code Quality, and Dropout: Stack Overflow Case Study – Replication Package

description: Previous studies that used data from Stack Overflow to develop predictive models often employed limited benchmarks of 3-5 models or adopted arbitrary selection methods. Despite being insightful, such approaches may not provide optimal results given their limited scope, suggesting the need to benchmark more models to avoid overlooking untested algorithms.

Our study evaluates 21 algorithms across three tasks: predicting the number of question a user is likely to answer, their code quality violations, and their dropout status. We employed normalisation, standardisation, as well as logarithmic and power transformations paired with Bayesian hyperparameter optimisation and genetic algorithms. CodeBERT, a pre-trained language model for both natural and programming languages, was fine-tuned to classify user dropout given their posts (questions and answers) and code snippets.

This replication package is provided for those interested in further examining our research methodology.
DOI: 10.5281/zenodo.14512051
title: Comprehensive Predictive Analytics for Collaborators' Answers, Code Quality, and Dropout: Stack Overflow Case Study – Replication Package

description: Previous studies that used data from Stack Overflow to develop predictive models often employed limited benchmarks of 3-5 models or adopted arbitrary selection methods. Despite being insightful, such approaches may not provide optimal results given their limited scope, suggesting the need to benchmark more models to avoid overlooking untested algorithms.

Our study evaluates 21 algorithms across three tasks: predicting the number of question a user is likely to answer, their code quality violations, and their dropout status. We employed normalisation, standardisation, as well as logarithmic and power transformations paired with Bayesian hyperparameter optimisation and genetic algorithms. CodeBERT, a pre-trained language model for both natural and programming languages, was fine-tuned to classify user dropout given their posts (questions and answers) and code snippets.

This replication package is provided for those interested in further examining our research methodology.
DOI: 10.15468/dl.auzjpt
title: Occurrence Download

description: A dataset containing 81078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Poland",
 "DatasetKey is Observation.org, Nature data from around the World"
 ]
}

 The dataset includes 81078 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038601-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3q2za5
title: Occurrence Download

description: A dataset containing 2651387 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "OccurrenceStatus is Present",
 "StateProvince is District Of Columbia"
 ]
}

 The dataset includes 2651387 records from 395 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038586-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6ug4c
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycas javana (Miq.) de Laub."
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038602-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wgryr
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ursus americanus Pallas, 1780"
 ]
}

 The dataset includes 931 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038603-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv3qxf
title: Occurrence Download

description: A dataset containing 267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus ponderosae Hopkins, 1902",
 "Year 2000-2024"
 ]
}

 The dataset includes 267 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038604-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bgp6x
title: Occurrence Download

description: A dataset containing 722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus rufipennis Kirby, 1837",
 "Year 2000-2024"
 ]
}

 The dataset includes 722 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038605-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tsjsy8
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sagittaria trifolia var. sinensis (Sims) Makino"
 ]
}

 The dataset includes 73 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038606-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64n3f4
title: Occurrence Download

description: A dataset containing 1044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dendroctonus micans (J.G.Kugelann, 1794)",
 "Year 2000-2024"
 ]
}

 The dataset includes 1044 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038607-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2es9wf
title: Occurrence Download

description: A dataset containing 30502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is India",
 "GadmGid is IND",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Identified date invalid, Taxon match none)",
 "PublishingOrg is 62431bdf-fa0c-452b-afce-be14884a47ff",
 "Year 2021-2024"
 ]
}

 The dataset includes 30502 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038608-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.33jx88
title: Occurrence Download

description: A dataset containing 27095 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Streptopelia orientalis (Latham, 1790)",
 "Year 2000-2024"
 ]
}

 The dataset includes 27095 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038609-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/8e82c401913d44a09a53fad4ced7c258
title: MCR LTER: Coral Reef: Gump Station Meteorological Data, ongoing since 2006

description: These data provide meteorological information measured at the GUMP research station on the north shore of Moorea island, French Polynesia. Data collection began in August 2006 and include air temperature, relative humidity, wind speed and direction, solar radiation, atmospheric pressure, and integrated rainfall. All sensors are sampled every 5 minutes. Post-processing of these data is limited to some unit conversion and exclusion of corrupted data records. Aggregate data are provided in daily, weekly, monthly, and yearly time bins.
 ClimDB data for station GUMPM were derived from the same data source.
 This material is based upon work supported by the U.S. National Science Foundation under Grant No. OCE 22-24354 (and earlier awards) as well as a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2024). This work represents a contribution of the Moorea Coral Reef (MCR) LTER Site.
DOI: 10.6084/m9.figshare.28052195
title: Supplementary Material for: KETO-MOOD: Ketogenic Diet for Microbiome Optimization and Overcoming Depression: A Protocol for a Randomized Controlled Trial

description: Major Depressive Disorder (MDD) significantly impacts millions worldwide, with limited success in achieving remission for many patients, leading to high disease burden and increased suicide risk. Psychotherapy and antidepressants, although effective, do not provide relief for all, prompting the search for alternative treatments. Ketogenic diets have demonstrated positive effects on brain health. Our study aims to investigate the efficacy of the ketogenic diet in alleviating MDD symptoms, filling a critical gap in psychiatric treatment options and offering a novel dietary approach with potential to mitigate disease burden and enhance mental well-being. This phase randomized controlled trial will evaluate the efficacy of a ten-week program of dietitian counseling and ketogenic meal provision versus an intervention with similar dietetic contact promoting a healthy, insulin-lowering, non-ketogenic diet. The primary outcome is the change in the Patient Health Questionnaire nine-item depression score. Secondary outcomes include cognitive and affective mindfulness, self-efficacy, sleep, cognitive function, work and social adjustment, and various immunological, metabolic, and microbiome markers at weeks 6 and 10. This study addresses a critical gap in depression treatment by exploring the ketogenic diet's potential as a novel intervention. Given the global impact of depression and limitations of current therapies, this research is valuable for its potential neuroprotective and metabolic benefits. It aims to advance psychiatric treatment strategies by clarifying the diet's effects on depression and its underlying mechanisms.