cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.612jm641d
title: Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby

description: DNA mismatch repair (MMR), the guardian of the genome, commences when MutS
 identifies a mismatch and recruits MutL to nick the error-containing
 strand, allowing excision and DNA resynthesis. Dominant MMR models posit
 that after mismatch recognition, ATP converts MutS to a
 hydrolysis-independent, diffusive mobile clamp that no longer recognizes
 the mismatch. Little is known about the postrecognition MutS mobile clamp
 and its interactions with MutL. Two disparate frameworks have been
 proposed: One in which MutS–MutL complexes remain mobile on the DNA, and
 one in which MutL stops MutS movement. Here we use single-molecule FRET to
 follow the postrecognition states of MutS and the impact of MutL on its
 properties. In contrast to current thinking, we find that after the
 initial mobile clamp formation event, MutS undergoes frequent cycles of
 mismatch rebinding and mobile clamp reformation without releasing DNA.
 Notably, ATP hydrolysis is required to alter the conformation of MutS such
 that it can recognize the mismatch again instead of bypassing it; thus,
 ATP hydrolysis licenses the MutS mobile clamp to rebind the mismatch.
 Moreover, interaction with MutL can both trap MutS at the mismatch en
 route to mobile clamp formation and stop movement of the mobile clamp on
 DNA. MutS’s frequent rebinding of the mismatch, which increases its
 residence time in the vicinity of the mismatch, coupled with MutL’s
 ability to trap MutS, should increase the probability that MutS–MutL MMR
 initiation complexes localize near the mismatch.  
description: Single molecule fluorescence resonance energy transfer (FRET)
 (smFRET) measurments acquired with a total internal reflection
 fluorescence wide-field microscope detected by an emCCD. Single
 immobilized particles are detected in movies and .traces files are
 extracted for each movie that contain the donor and acceptor intensities
 as a function of time for all identified molecules in a movie. .itx format
 traces for donor and acceptor for selected traces are also included. Some
 spreadsheets for counting various populations are also included.
      
description: This contains single molecule FRET (smFRET) data following the
 post-recognition state(s) of MutS and the impact of MutL on its
 properties.
DOI: 10.5061/dryad.crjdfn322
title: Data from: Historic and contemporary use of catfish aquaculture by piscivorous birds in the Mississippi Delta

description: This dataset contains data used in the manuscript "Historic and
 contemporary use of catfish aquaculture by piscivorous birds in the
 Mississippi Delta", published in The Condor: Ornithological
 Applications. All data were collected in northwest
 Mississippi during winters (October - April) of 2000-2001, 2003-2004,
 2015-2016, 2016-2017, and 2017-2018. Two primary types of data are
 present: 1) roost surveys, and 2) aquaculture cluster surveys. Roost
 surveys were aerial surveys in which all known double-crested cormorant
 night roosts in northwest Mississippi were surveyed and cormorants were
 counted. Roost survey data can be found in the
 “Cormorant_Roost_Survey_Counts.xlxs” file. For the aquaculture cluster
 surveys, clusters were defined as U.S. Geological Survey land survey
 sections that contained aquaculture. For each year of data, a random
 subset of these clusters were chosen to be aerial surveyed and
 double-crested cormorants, great blue herons, and great egrets were
 recorded per cluster. Basic descriptive statistics of the clusters can be
 found in the “Cluster_Descriptive_Stats.xlxs” file. The
 “Historic_vs_Contemporary_Cormorants.xlxs” file was used to compare
 cormorant density on aquaculture clusters between the historic period
 (2000-2001, 2003-2004) and contemporary period (2015-2016, 2016-2017, and
 2017-2018). Lastly, the “Cluster_Survey_Data_Contemporary.xlxs” file
 contains data recorded during the contemporary period only, and other
 variables regarding the clusters are also present.
description: Metadata for each file can be found in the "Metadata"
 tab of each spread sheet.
DOI: 10.5061/dryad.8931zcrn3
title: Data from: Exposure effects beyond the epithelial barrier: trans-epithelial induction of oxidative stress by diesel exhaust particulates in lung fibroblasts in an organotypic human airway model

description: In vitro bronchial epithelial monoculture models have been pivotal in
 defining the adverse effects of inhaled toxicant exposures; however, they
 are only representative of one cellular compartment and may not accurately
 reflect the effects of exposures on other cell types. Lung fibroblasts
 exist immediately beneath the bronchial epithelial barrier and play a
 central role in lung structure and function, as well as disease
 development and progression. We tested the hypothesis that in vitro
 exposure of a human bronchial epithelial cell barrier to the model oxidant
 diesel exhaust particulates caused trans-epithelial oxidative stress in
 the underlying lung fibroblasts using a human bronchial epithelial cell
 and lung fibroblast co-culture model. We observed that diesel exhaust
 particulates caused trans-epithelial oxidative stress in underlying lung
 fibroblasts as indicated by intracellular accumulation of the reactive
 oxygen species hydrogen peroxide, oxidation of the cellular antioxidant
 glutathione, activation of NRF2, and induction of oxidative stress
 responsive genes. Further, targeted antioxidant treatment of lung
 fibroblasts partially mitigated the oxidative stress response gene
 expression in adjacent human bronchial epithelial cells during diesel
 exhaust particulate exposure. This indicates that exposure induced
 oxidative stress in the airway extends beyond the bronchial epithelial
 barrier and that lung fibroblasts are both a target and a mediator of the
 adverse effects of inhaled chemical exposures despite a lack of direct
 exposure to the inhaled material. These findings illustrate the value of
 co-culture models and suggest that trans-epithelial exposure effects
 should be considered in inhalation toxicology research and testing.
description: Refer to manuscript and included supplemental methods
DOI: 10.15468/dl.yxbpam
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocallerya megasperma",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 142 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002397-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2rbnzs7k5
title: Agricultural intensification reduces plant taxonomic and functional diversity across European arable systems.

description: 1. Agricultural intensification is one of the main drivers of species loss
 worldwide, but there is still a lack of information about its effect on
 functional diversity of arable weeds communities. 2. Using a large scale
 pan European study including 786 fields within 261 farms from eight
 countries, we analysed differences in the taxonomic and functional
 diversity of arable weeds assemblages across different levels of
 agricultural intensification in. We estimated weed species frequency in
 each field, and collected species’ traits (vegetative height, specific
 leaf area and seed mass) from the TRY plant trait database. With this
 information we estimated taxonomic (species richness), functional
 composition (community weighted means) and functional diversity
 (functional richness, evenness, divergence and redundancy). We used
 indicators of agricultural management intensity at the individual field
 scale (e.g. yield, inputs of nitrogen fertilizer and herbicides, frequency
 of mechanical weed control practices) and at the landscape scale
 surrounding the field (i.e. number of crop types, mean field size and
 proportion of arable land cover within a radius of 500m from the sampling
 points). 3. The effects of agricultural intensification on species and
 functional richness at the field scale were stronger than those of
 intensification at the landscape scale, and we did not observe evidence of
 interacting effects between the two scales. Overall, assemblages in more
 intensified areas had fewer species, a higher prevalence of species with
 ruderal strategies (low stature, high leaf area, light seeds), and lower
 functional redundancy. 4. Maintaining the diversity of Europe’s arable
 weed communities requires some simple management interventions, for
 example, reducing the high intensity of field-level agricultural
 management across Europe, which could be complemented by interventions
 that increase landscape complexity.
DOI: 10.5061/dryad.ngf1vhhr8
title: Data from: Multi-level patterns of genetic structure and isolation by distance in the widespread plant Mimulus guttatus

description: An understanding of genetic structure is essential for answering many
 questions in population genetics. However, complex population dynamics and
 scale-dependent processes can make it difficult to detect if there are
 distinct genetic clusters present in natural populations. Inferring
 discrete population structure is particularly challenging in the presence
 of continuous genetic variation such as isolation by distance. Here, we
 use the plant species Mimulus guttatus as a case study for understanding
 genetic structure at three spatial scales. We use reduced-representation
 sequencing and marker-based genotyping to understand dispersal dynamics
 and to characterise genetic structure. Our results provide insight into
 the spatial scale of genetic structure in a widespread plant species, and
 demonstrate how dispersal affects spatial genetic variation at the local,
 regional, and range-wide scale. At a fine-spatial scale, we show dispersal
 is rampant with little evidence of spatial genetic structure within
 populations. At a regional-scale, we show continuous differentiation
 driven by isolation by distance over hundreds of kilometres, with broad
 geographic genetic clusters that span major barriers to dispersal. Across
 Western North America, we observe geographic genetic structure and the
 genetic signature of multiple postglacial recolonization events, with
 historical gene flow linking isolated populations.  Our genetic
 analyses show M. guttatus is highly dispersive and maintains large
 metapopulations with high intrapopulation variation. This high diversity
 and dispersal confounds the inference of genetic structure, with
 multi-level sampling and spatially-explicit analyses required to
 understand population history.
description: Microsatellite data for the two populations used in the
 fine-scale spatial genetic structure analysis are presented in FSTAT
 format. The GBS data for the Sierra data are in VCF format.
DOI: 10.15468/dl.3qgysd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campocolinus albogularis",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049531-250811113504898/datasets/export for details.
DOI: 10.15468/dl.gss9an
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abapeba grassima (Chickering, 1973)"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016135-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eysmdf
title: Occurrence Download

description: A dataset containing 35932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Celeus flavescens (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 35932 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009788-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/x83g-j141
title: n-propyl nitrite + None - Photolysis - 2001-01-11

description: Publication of the dataset
DOI: 10.25326/n2x0-kh73
title: butyl acetate + Cl - Gas-phase oxidation - kinetic study

description: Publication of the dataset
DOI: 10.25326/ncnk-wm69
title: ethyl acetate + Cl - Gas-phase oxidation - kinetic study - 2016-01-01

description: Publication of the dataset
DOI: 10.25326/35t0-j381
title: n-propyl nitrite + None - Photolysis - 2001-02-01

description: Publication of the dataset
DOI: 10.25326/zyg3-0j68
title: ethyl butanoate + Cl - Gas-phase oxidation - kinetic study - 2010-01-01

description: Publication of the dataset
DOI: 10.6084/m9.figshare.29109686
title: Interview Shiv.docx

description: In-depth interview transcription
DOI: 10.25326/abaw-4h88
title: n-propyl nitrite + None - Photolysis - 2001-02-15

description: Publication of the dataset
DOI: 10.25326/6gjy-9c05
title: n-propyl nitrite + None - Photolysis - 2002-02-07

description: Publication of the dataset
DOI: 10.25326/dxv6-b539
title: n-propyl nitrite + None - Photolysis - 2002-01-29

description: Publication of the dataset
DOI: 10.25326/82ry-v744
title: n-butyl nitrite + None - Photolysis - 2002-04-26

description: Publication of the dataset
DOI: 10.25326/3z7m-1f47
title: n-propyl nitrite + None - Photolysis - 2001-07-17

description: Publication of the dataset
DOI: 10.25326/yvg1-6597
title: n-propyl nitrite + None - Photolysis - 2001-01-12

description: Publication of the dataset
DOI: 10.25326/x5xc-zh75
title: n-propyl nitrite + None - Photolysis - 2001-02-05

description: Publication of the dataset
DOI: 10.25326/akad-ta89
title: n-propyl nitrite + None - Photolysis - 2002-07-12

description: Publication of the dataset
DOI: 10.25326/4bha-9104
title: n-propyl nitrite + None - Photolysis - 2002-07-03

description: Publication of the dataset
DOI: 10.25326/qgjb-kk70
title: n-propyl nitrite + None - Photolysis - 2001-02-02

description: Publication of the dataset
DOI: 10.25625/gpkb4q
title: Replication Data for: On spurious fixed points in iterative maximum likelihood reconstruction for quantum tomography

description: Python code and data for replication of figures in 'On spurious fixed points in iterative maximum likelihood reconstruction for quantum tomography'
DOI: 10.5281/zenodo.16908393
title: Dataset and R code (How Vegetation Structure and Diaspore Traits Influence Secondary Wind Dispersal: Evidence from a Large Wind-Tunnel Study)
DOI: 10.5281/zenodo.16908394
title: Dataset and R code (How Vegetation Structure and Diaspore Traits Influence Secondary Wind Dispersal: Evidence from a Large Wind-Tunnel Study)
DOI: 10.20350/digitalcsic/17720
title: Dataset Soil Biogeochemical and Microbial Data from Organic Farming Systems with Compost and Cover Vegetation

description: Dataset of artícle : "Compost and vegetation cover drive soil fertility, microbial activity, and community in organic farming soils"
DOI: 10.17909/bxjt-mw24
title: HST/COS data from paper "Circumgalactic Gas on the Outskirts of the Local Group: the Halo of Sextans B" submitted to ApJ in November 2025

description: This DOI contains four COS/FUV/G130M/1291 exposures of the AGN J1000+0524 (full name SDSS~J100035.48+052428.5). This AGN passes through the Sextans B galaxy at low impact parameter.
DOI: 10.15468/dl.2rzuwt
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psidium araca",
 "Year 1970-2025"
 ]
}

 The dataset includes 5 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033277-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uzb92q
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sarothrura ayresi"
 ]
}

 The dataset includes 43 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033278-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qtpg9f
title: Occurrence Download

description: A dataset containing 406760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Sweden, Finland, Norway, Spain, Andorra, France, Monaco, Switzerland, Italy, Germany, Austria, Slovenia, Liechtenstein)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Bombus wurflenii, Bombus soroeensis, Bombus pratorum, Bombus pascuorum, Bombus hypnorum, Bombus hortorum, Bombus bohemicus)",
 "Year 1990-2025"
 ]
}

 The dataset includes 406760 records from 845 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033241-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c6uu6h
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callibella humilis"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033279-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17609317
title: MnSOD Variants In Silico Dataset for Structural and Molecular Dynamics Analysis

description: This dataset contains all structural models, molecular dynamics preparation files, and processed analysis outputs used in the study:

“In-Silico Structural and Functional Characterization of MnSOD Analogs from Bacillus subtilis.”

Contents include:





Predicted_Structures/AlphaFold2 v1.5.5 predicted 3D structures for 15 MnSOD mutants.




Simulation_Setup/CHARMM-GUI (v3.7) Step 3 system preparation files:.pdb, .crd, .psf, water box, ions, and topology/parameter bundles.




MD_Results/Processed RMSD, RMSF, and Radius of Gyration (Rg) data extracted from 100 ns simulations.Values provided as .csv files for all variants.




DocumentationA general README describing folder contents, and a Software README listing all tools and versions used.



This dataset is provided to support transparency, reproducibility, and reuse of the computational workflow.
DOI: 10.5281/zenodo.17609318
title: MnSOD Variants In Silico Dataset for Structural and Molecular Dynamics Analysis

description: This dataset contains all structural models, molecular dynamics preparation files, and processed analysis outputs used in the study:

“In-Silico Structural and Functional Characterization of MnSOD Analogs from Bacillus subtilis.”

Contents include:





Predicted_Structures/AlphaFold2 v1.5.5 predicted 3D structures for 15 MnSOD mutants.




Simulation_Setup/CHARMM-GUI (v3.7) Step 3 system preparation files:.pdb, .crd, .psf, water box, ions, and topology/parameter bundles.




MD_Results/Processed RMSD, RMSF, and Radius of Gyration (Rg) data extracted from 100 ns simulations.Values provided as .csv files for all variants.




DocumentationA general README describing folder contents, and a Software README listing all tools and versions used.



This dataset is provided to support transparency, reproducibility, and reuse of the computational workflow.
DOI: 10.15468/dl.edexuu
title: Occurrence Download

description: A dataset containing 95 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cebuella niveiventris"
 ]
}

 The dataset includes 95 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033282-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wmf9p
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callimico goeldii"
 ]
}

 The dataset includes 288 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033281-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7xxkzu
title: Occurrence Download

description: A dataset containing 2429330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((307.84101 -18.25034,317.61504 -18.25034,317.61504 -8.90176,307.84101 -8.90176,307.84101 -18.25034))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2429330 records from 1042 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033230-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18347222
title: Improved joint estimation of daily actual evapotranspiration and gross primary production

description: This study presents a unified framework to jointly estimate daily actual evapotranspiration (ET) and gross primary production (GPP) at fine spatial resolution by integrating Landsat, Sentinel-2, Sentinel-1, and climate data. The approach combines multisource vegetation index (VI) fusion, daily VI reconstruction using a bidirectional iteration method, and joint ET–GPP modeling, enabling temporally continuous and fine-scale monitoring of water–carbon processes.
DOI: 10.5281/zenodo.18347221
title: Improved joint estimation of daily actual evapotranspiration and gross primary production

description: This study presents a unified framework to jointly estimate daily actual evapotranspiration (ET) and gross primary production (GPP) at fine spatial resolution by integrating Landsat, Sentinel-2, Sentinel-1, and climate data. The approach combines multisource vegetation index (VI) fusion, daily VI reconstruction using a bidirectional iteration method, and joint ET–GPP modeling, enabling temporally continuous and fine-scale monitoring of water–carbon processes.