cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1218068.09fu
title: SH1218068.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218069.09fu
title: SH1218069.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218070.09fu
title: SH1218070.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218071.09fu
title: SH1218071.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218072.09fu
title: SH1218072.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218073.09fu
title: SH1218073.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218074.09fu
title: SH1218074.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218075.09fu
title: SH1218075.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1218076.09fu
title: SH1218076.09FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.14892976
title: miR-665 inhibits epithelial-to-mesenchymal transition in bladder cancer via the SMAD3/SNAIL axis

description: Emerging research indicates that miRNAs can regulate cancer progression by influencing molecular pathways. Here, we studied miR-665, part of the DLK1-DIO3 miRNA cluster, which is downregulated by upstream methylation in bladder cancer. MiR-665 overexpression significantly downregulated the expression of SMAD3, phospho-SMAD3, and SNAIL, reversed epithelial–mesenchymal transition progression, and inhibited the migration of bladder cancer cells. To predict potential targets of miR-665, we used online databases and subsequently determined that miR-665 binds directly to the 3ʹ untranslated region of SMAD3. Moreover, silencing of SMAD3 with small interfering RNAs phenocopied the effect of miR-665 overexpression, and overexpression of SMAD3 restored miR-665-overexpression-induced metastasis. This study revealed the role of the miR-665/SMAD3/SNAIL axis in bladder cancer, as well as the potential of miR-665 as a promising therapeutic target.
DOI: 10.6084/m9.figshare.8073626.v1
title: Additional file 2: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: Table S2 ZFP36_vs_Ctrl_Sig_DEG. (TXT 135 kb)
DOI: 10.6084/m9.figshare.13316617
title: Additional file 1 of Dexmedetomidine as an adjunct to local anesthetics in nerve block relieved pain more effectively after TKA: a meta-analysis of randomized controlled trials

description: Additional file 1. characteristics of included studies
DOI: 10.5281/zenodo.10654564
title: Electrostatically controlled spin polarization in Graphene-CrSBr magnetic proximity heterostructures (Experimental data and model)

description: experimental data and model for the paper:

'Electrostatically controlled spin polarization in Graphene-CrSBr magnetic proximity heterostructures'  https://doi.org/10.48550/arXiv.2312.07131

For raw data and symmetry analysis of quantum Hall effect field sweep data at 20K, see folder 'new gated field sweep'

For matrix model python code and the simulation results for quantum Hall effect at 20K, see folder ' 20K with low field and 3meV LL spread'

For the comparison and combined analysis of model and experimental data mentioned above, see folder' Rxx B model comparison'

For raw data and symmetry analysis of Hall effect field sweep data at 180K, see folder '180K field sweep'
DOI: 10.5281/zenodo.10654565
title: Electrostatically controlled spin polarization in Graphene-CrSBr magnetic proximity heterostructures (Experimental data and model)

description: experimental data and model for the paper:

'Electrostatically controlled spin polarization in Graphene-CrSBr magnetic proximity heterostructures'  https://doi.org/10.48550/arXiv.2312.07131

For raw data and symmetry analysis of quantum Hall effect field sweep data at 20K, see folder 'new gated field sweep'

For matrix model python code and the simulation results for quantum Hall effect at 20K, see folder ' 20K with low field and 3meV LL spread'

For the comparison and combined analysis of model and experimental data mentioned above, see folder' Rxx B model comparison'

For raw data and symmetry analysis of Hall effect field sweep data at 180K, see folder '180K field sweep'
DOI: 10.6084/m9.figshare.8073641
title: Additional file 4: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: Up_GO_enrichment_P. (XLS 15 kb)
DOI: 10.6084/m9.figshare.8073641.v1
title: Additional file 4: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: Up_GO_enrichment_P. (XLS 15 kb)
DOI: 10.6084/m9.figshare.13316624
title: Additional file 3 of Comparison of patients hospitalized with COVID-19, H7N9 and H1N1

description: Additional file 3: Table S3. The details of the virus shedding duration of nasopharyngeal swab for COVID-19 and H7N9
DOI: 10.6084/m9.figshare.16986654.v1
title: Additional file 2 of Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli

description: Additional file 2: Table S2. Genotypic and phenotypic data of the F2 population. The plants were firstly genotyped by Broc94 and Broc4 to detect recombinants, which were further genotyped by additional eight markers.
DOI: 10.6084/m9.figshare.8073659.v1
title: Additional file 6: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: Up_KEGG_pathway_iden. (XLS 33 kb)
DOI: 10.6084/m9.figshare.14889394
title: Additional file 6 of Molecular subtype identification and prognosis stratification by a metabolism-related gene expression signature in colorectal cancer

description: Additional file 6: Table S6. Survival-related metabolic genes used for unsupervised clustering in the GSE39582 dataset.
DOI: 10.6084/m9.figshare.16986651
title: Additional file 1 of Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli

description: Additional file 1: Table S1. Information of location, sequence, genotype (identified according to the resequencing data), and polymorphisms of all the markers used for genetic mapping.
DOI: 10.6084/m9.figshare.20652826
title: Additional file 2 of Integrated methylome and transcriptome analysis unravel the cold tolerance mechanism in winter rapeseed(Brassica napus L.)

description: Additional file 2. Table S2.1 The DMRs between two cultivars under CG context in control. Table S2.2 The DMRs between two cultivars under CHG context in control. Table S2.3 The DMRs between two cultivars under CHH context in control. Table S2.4 The DMRs between two cultivars under CG context in treatment1. Table S2.5 The DMRs between two cultivars under CHG context in treatment1. Table S2.6 The DMRs between two cultivars under CHH context in treatment1. Table S2.7 The DMRs between two cultivars under CG context in treatment2. Table S2.8 The DMRs between two cultivars under CHG context in treatment2. Table S2.9 The DMRs between two cultivars under CHH context in treatment2.
DOI: 10.6084/m9.figshare.20652835.v1
title: Additional file 5 of Integrated methylome and transcriptome analysis unravel the cold tolerance mechanism in winter rapeseed(Brassica napus L.)

description: Additional file 5. Table S5.1 The DEGs between two cultivars in control. Table S5.2 The DEGs between two cultivars in treatment1. Table S5.3 The DEGs between two cultivars in treatment2.
DOI: 10.6084/m9.figshare.14361375.v1
title: Additional file 2 of HBP1-mediated transcriptional repression of AFP inhibits hepatoma progression

description: Additional file 2: Figure S2. HBP1 deletion aggravates DEN/CCl4-induced hepatic fibrosis. (A) Representative H.E. staining of liver sections from 12 weeks after DEN/CCl4 treatment in wild type or HBP1−/− mice. Scale bar, 100 μm. (B) Representative images of Masson’s trichrome staining and Sirius red staining of liver sections from the mice described in Figure S2A.. Scale bar, 200 μm. (C) The protein levels of HBP1, TypeIcollagen, Type III collagen, IL-1 and TNF-α in the mice liver described in Figure S2A. were measured by Western blotting. β-actin was used as a loading control. (D) The mRNA levels of TypeIcollagen, Type III collagen, IL-1 and TNF-α were measured by Realtime-PCR in the mice liver described in Figure S2A. (E) Serum ALT and AST levels of the mice described in Figure S2A. The means ± S.D. are shown (n = 5). Error bars represent S.D. *, p &lt; 0.05, **, p &lt; 0.01.
DOI: 10.6084/m9.figshare.14361443
title: Additional file 1 of Effect of milk replacer allowance on calf faecal bacterial community profiles and fermentation

description: Additional file 1: Table S1. Relative abundances (%) of bacterial family-level taxa by diet group. Table S2. Relative abundances (%) of bacterial genus-level taxa by diet group.
DOI: 10.6084/m9.figshare.20652832
title: Additional file 4 of Integrated methylome and transcriptome analysis unravel the cold tolerance mechanism in winter rapeseed(Brassica napus L.)

description: Additional file 4.  Table S4.1 The data of RNA-seq in two cultivars of rapeseed. Table S4.2 Number of differentially expression genes between two cultivars of rapeseed. Table S4.3 Correlation analysis between the three replicates of RNA-seq all libraries.
DOI: 10.6084/m9.figshare.13316657.v1
title: Additional file 12 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 12: Table S12. GO annotation of target genes in infected and control murine spleen.
DOI: 10.6084/m9.figshare.8073677
title: Additional file 8: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: ZFP36_vs_Ctrl_IR_RAS_p0.05_known. (TXT 4 kb)
DOI: 10.6084/m9.figshare.20652847
title: Additional file 9 of Integrated methylome and transcriptome analysis unravel the cold tolerance mechanism in winter rapeseed(Brassica napus L.)

description: Additional file 9. Table S9.1 Data of RT-qPCR. Table S9.2 Data of RT-qPCR and RNA-seq.
DOI: 10.6084/m9.figshare.13316657
title: Additional file 12 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 12: Table S12. GO annotation of target genes in infected and control murine spleen.
DOI: 10.6084/m9.figshare.8073683.v1
title: Additional file 9: of Tristetraprolin specifically regulates the expression and alternative splicing of immune response genes in HeLa cells

description: Immune_response_gene_FPKM. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.20652844.v1
title: Additional file 8 of Integrated methylome and transcriptome analysis unravel the cold tolerance mechanism in winter rapeseed(Brassica napus L.)

description: Additional file 8. Table S8.1 Identification of differentially expressed transcription factors for DMEGs. Table S8.2 Result of TFs between two cultivars in treatment1. Table S8.3 Result of TFs between two cultivars in treatment2. Table S8.4 The correlation coefficient between the expression level and the methylation level of the gene encoding the transcription factor. Table S8.5 Result of kinases between two cultivars in treatment1. Table S8.6 Result of kinases between two cultivars in treatment2.
DOI: 10.6084/m9.figshare.13316678.v1
title: Additional file 5 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 5: Table S5. lncRNA expression level in infected and control murine liver.
DOI: 10.6084/m9.figshare.16986654
title: Additional file 2 of Genetic mapping and candidate gene identification of BoGL5, a gene essential for cuticular wax biosynthesis in broccoli

description: Additional file 2: Table S2. Genotypic and phenotypic data of the F2 population. The plants were firstly genotyped by Broc94 and Broc4 to detect recombinants, which were further genotyped by additional eight markers.
DOI: 10.6084/m9.figshare.8073698
title: Additional file 2: of Photoperiod sensitivity of Canadian flax cultivars and 5-azacytidine treated early flowering derivative lines

description: Data from reciprocal cross experiments. Flowering time, number of nodes, plant height and branching heightÂ for the five cultivars and three mutants exposed to different short-day and long-day durations is given. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.13316651.v1
title: Additional file 10 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 10: Table S10. Dysregulated lncRNA target genes in infected and control murine spleen.
DOI: 10.6084/m9.figshare.13316624.v1
title: Additional file 3 of Comparison of patients hospitalized with COVID-19, H7N9 and H1N1

description: Additional file 3: Table S3. The details of the virus shedding duration of nasopharyngeal swab for COVID-19 and H7N9
DOI: 10.6084/m9.figshare.13316669.v1
title: Additional file 2 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 2: Table S2. mRNA expression in murine liver and spleen.
DOI: 10.6084/m9.figshare.13316654.v1
title: Additional file 11 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 11: Table S11. Gene Ontology (GO) annotation of target genes in infected and control murine liver.
DOI: 10.6084/m9.figshare.14361416
title: Additional file 2 of The largest meta-analysis on the global prevalence of microsporidia in mammals, avian and water provides insights into the epidemic features of these ubiquitous pathogens

description: Additional file 2: Table S11. Information on microsporidian species, strains, genotypes, geographic locations and hosts was retrieved from the GenBank nucleotide database.
DOI: 10.6084/m9.figshare.13316663
title: Additional file 14 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 14: Table S14. KEGG enrichment of target genes in murine spleen.
DOI: 10.6084/m9.figshare.13316666.v1
title: Additional file 1 of RNA sequencing analysis of altered expression of long noncoding RNAs associated with Schistosoma japonicum infection in the murine liver and spleen

description: Additional file 1: Table S1. Novel long noncoding RNAs (lncRNA) predicted in murine liver and spleen.