cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1409389
title: Koch Snowflake Fractal Lorenz Model

description: Excel Model for Fractal Lorenz Paper. Abstract The Koch snowflake fractal attractor was analysed by Lorenz and Gini methods. It was found the fractal Lorenz curve fits the wealth distribution Lorenz curve. As the fractal grows and/or develops with iteration-time the Lorenz curve expands to the right, with a corresponding increasing Gini coefficient. All triangles (triangle sizes) grow with iteration-time from an arbitrary size, and iteration group size accelerate apart from each other with iteration time. It was concluded the Lorenz distribution is a property of the fractal and inextricably linked to (fractal) growth and development. This behaviour can be observed in any fractal structure.
DOI: 10.6084/m9.figshare.1409427.v3
title: Methods S1

description: A static HTML representation of the code that was used to create all the analyses in this study. <strong>nbviewer</strong>: http://goo.gl/KzFAvj
DOI: 10.6084/m9.figshare.1409426.v6
title: ReproPhylo: an environment for reproducible phylogenomics

description: Methods S1 in nbviewer: http://goo.gl/KzFAvj The reproducibility of experiments is key to the scientific process, and particularly necessary for accurate reporting of analyses in data-rich fields such as phylogenomics. We present ReproPhylo, a phylogenomic analysis environment developed to ensure experimental reproducibility, to facilitate the handling of large-scale data, and to assist methodological experimentation. Reproducibility, and instantaneous repeatability, is built in to the ReproPhylo system, and does not require user intervention or configuration because the it stores the experimental workflow as a single, serialized Python object that contains explicit provenance and environment information. This ‘single file’ approach ensures the persistence of provenance across iterations of the analysis with changes automatically, managed by the version control program Git. ReproPhylo produces an extensive human-readable report, and generates a comprehensive experimental archive file, both of which are suitable for submission with publications. The system facilitates thorough experimental exploration of both parameters and data. ReproPhylo is a platform independent CC0 python module, and is easily installed as a Docker image, with an IPython Notebook GUI, or as a slimmer version in a Galaxy distribution.
DOI: 10.6084/m9.figshare.1409398.v1
title: Glycosidic adjustment of innate IgM to the phenotype

description: Blood group ABO phenotype formation and innate IgM specificities
DOI: 10.6084/m9.figshare.1409389.v1
title: Koch Snowflake Fractal Lorenz Model

description: Excel Model for Fractal Lorenz Paper.
DOI: 10.6084/m9.figshare.1409426.v7
title: ReproPhylo: an environment for reproducible phylogenomics

description: Methods S1 in nbviewer: http://goo.gl/KzFAvj The reproducibility of experiments is key to the scientific process, and particularly necessary for accurate reporting of analyses in data-rich fields such as phylogenomics. We present ReproPhylo, a phylogenomic analysis environment developed to ensure experimental reproducibility, to facilitate the handling of large-scale data, and to assist methodological experimentation. Reproducibility, and instantaneous repeatability, is built in to the ReproPhylo system, and does not require user intervention or configuration because the it stores the experimental workflow as a single, serialized Python object that contains explicit provenance and environment information. This ‘single file’ approach ensures the persistence of provenance across iterations of the analysis with changes automatically, managed by the version control program Git. ReproPhylo produces an extensive human-readable report, and generates a comprehensive experimental archive file, both of which are suitable for submission with publications. The system facilitates thorough experimental exploration of both parameters and data. ReproPhylo is a platform independent CC0 python module, and is easily installed as a Docker image, with an IPython Notebook GUI, or as a slimmer version in a Galaxy distribution.
DOI: 10.6084/m9.figshare.1409389.v2
title: Koch Snowflake Fractal Lorenz Model

description: Excel Model for Fractal Lorenz Paper.
DOI: 10.6084/m9.figshare.1409398.v2
title: Glycosidic adjustment of innate IgM to the phenotype

description: Blood group ABO phenotype formation and innate IgM specificities
DOI: 10.6084/m9.figshare.1409426.v9
title: ReproPhylo: an environment for reproducible phylogenomics

description: Methods S1 in nbviewer: http://goo.gl/KzFAvj The reproducibility of experiments is key to the scientific process, and particularly necessary for accurate reporting of analyses in data-rich fields such as phylogenomics. We present ReproPhylo, a phylogenomic analysis environment developed to ensure experimental reproducibility, to facilitate the handling of large-scale data, and to assist methodological experimentation. Reproducibility, and instantaneous repeatability, is built in to the ReproPhylo system, and does not require user intervention or configuration because the it stores the experimental workflow as a single, serialized Python object that contains explicit provenance and environment information. This ‘single file’ approach ensures the persistence of provenance across iterations of the analysis with changes automatically, managed by the version control program Git. ReproPhylo produces an extensive human-readable report, and generates a comprehensive experimental archive file, both of which are suitable for submission with publications. The system facilitates thorough experimental exploration of both parameters and data. ReproPhylo is a platform independent CC0 python module, and is easily installed as a Docker image, with an IPython Notebook GUI, or as a slimmer version in a Galaxy distribution.
DOI: 10.6084/m9.figshare.1409373
title: oct-data

description: oct-data
DOI: 10.6084/m9.figshare.1409426.v8
title: ReproPhylo: an environment for reproducible phylogenomics

description: Methods S1 in nbviewer: http://goo.gl/KzFAvj The reproducibility of experiments is key to the scientific process, and particularly necessary for accurate reporting of analyses in data-rich fields such as phylogenomics. We present ReproPhylo, a phylogenomic analysis environment developed to ensure experimental reproducibility, to facilitate the handling of large-scale data, and to assist methodological experimentation. Reproducibility, and instantaneous repeatability, is built in to the ReproPhylo system, and does not require user intervention or configuration because the it stores the experimental workflow as a single, serialized Python object that contains explicit provenance and environment information. This ‘single file’ approach ensures the persistence of provenance across iterations of the analysis with changes automatically, managed by the version control program Git. ReproPhylo produces an extensive human-readable report, and generates a comprehensive experimental archive file, both of which are suitable for submission with publications. The system facilitates thorough experimental exploration of both parameters and data. ReproPhylo is a platform independent CC0 python module, and is easily installed as a Docker image, with an IPython Notebook GUI, or as a slimmer version in a Galaxy distribution.
DOI: 10.6084/m9.figshare.1409373.v2
title: oct-data

description: oct-data
DOI: 10.6084/m9.figshare.1409373.v1
title: oct-data

description: oct-data
DOI: 10.6084/m9.figshare.1408873
title: Defense Presentation Notes on the Spatial Ecology of Pogonomyrmex comanche

description: These are notes that go with my slide presentation of my dissertation, The Spatial Ecology of the Comanche Harvester Ant, Pogonomyrmex comanche (Formicidae, Hymenoptera). The notes are snumbered in correspondence to the slides
DOI: 10.6084/m9.figshare.1408852
title: Experimental-Computational Studies of Fatty Acids Distribution Networks

description: Data set for Experimental-Computational Studies of Fatty Acids Distribution Networks in the Ruminal Microbiome based on the Perturbation Theory of Linear Free-Energy Relationships
DOI: 10.6084/m9.figshare.1408873.v1
title: Defense Presentation Notes on the Spatial Ecology of Pogonomyrmex comanche

description: These are notes that go with my slide presentation of my dissertation, The Spatial Ecology of the Comanche Harvester Ant, Pogonomyrmex comanche (Formicidae, Hymenoptera). The notes are snumbered in correspondence to the slides
DOI: 10.6084/m9.figshare.1408813
title: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence

description: * CoalHMM estimates in 1Mb chunks ILS09_gamma_aln_coord_clean_fixscale.csv Estimates for the full genome alignment obtained as described in Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842. * Alignment statistics for the X chromosome chrX.statistics.csv This file has been generated by MafFilter on the the human, chimpanzee, gorilla and orangutan alignment. It contains counts on the various parsimony-informative sites. * ILS in 100 kb windows along the genome alignment. full_scan_100k.csv ILS computed by window scanning along the posterior decoding from the CoalHMM method. * Divergence ratios computed along the X chromosome. Compara.epo_6_primates_hsap-projected.chrXnew.subset.nogap.cleaned_aln.statistics.csv This file was generated by MafFilter on the X chromosome alignment. It contains the divergence estimates between human, chimpanzee, gorilla and orangutan in 100 kb windows. * Nucleotide diversity for the X chromosome in 14 human populations piX_100kb_regions.csv This file was generated from the 1000 Human Genomes Project data. * Genome coordinates of the 8 low-ILS regions PNILSR_1Mb_10pc_edited.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (Asian population)<br>Neanderthal_ASN.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (European population)<br>Neanderthal_EUR.csv Coordinates are according to human hg19. * Ampliconic regions<br>AmpliconicRegions_hg19.csv Ampliconic regions in hg19 coordinates. The two last column describe is the region was included in our genome alignment, and if it was comprised in a low-ILS region.
DOI: 10.6084/m9.figshare.1408803
title: Bouba Kiki et al over several samples from different populations

description: data set from across cultures. Data collected via lab based research and via MTurk.
DOI: 10.6084/m9.figshare.1408813.v2
title: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explain its low divergence

description: * CoalHMM estimates in 1Mb chunks ILS09_gamma_aln_coord_clean_fixscale.csv Estimates for the full genome alignment obtained as described in Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842. * Alignment statistics for the X chromosome chrX.statistics.csv This file has been generated by MafFilter on the the human, chimpanzee, gorilla and orangutan alignment. It contains counts on the various parsimony-informative sites. * ILS in 100 kb windows along the genome alignment. full_scan_100k.csv ILS computed by window scanning along the posterior decoding from the CoalHMM method. * Divergence ratios computed along the X chromosome. Compara.epo_6_primates_hsap-projected.chrXnew.subset.nogap.cleaned_aln.statistics.csv This file was generated by MafFilter on the X chromosome alignment. It contains the divergence estimates between human, chimpanzee, gorilla and orangutan in 100 kb windows. * Nucleotide diversity for the X chromosome in 14 human populations piX_100kb_regions.csv This file was generated from the 1000 Human Genomes Project data. * Genome coordinates of the 8 low-ILS regions PNILSR_1Mb_10pc_edited.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (Asian population)<br>Neanderthal_ASN.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (European population)<br>Neanderthal_EUR.csv Coordinates are according to human hg19. * Ampliconic regions<br>AmpliconicRegions_hg19.csv Ampliconic regions in hg19 coordinates. The two last column describe is the region was included in our genome alignment, and if it was comprised in a low-ILS region.
DOI: 10.6084/m9.figshare.1408852.v2
title: Experimental-Computational Studies of Fatty Acids Distribution Networks

description: Data set for Experimental-Computational Studies of Fatty Acids Distribution Networks in the Ruminal Microbiome based on the Perturbation Theory of Linear Free-Energy Relationships
DOI: 10.6084/m9.figshare.1408813.v1
title: Strong selective sweeps on the X chromosome in the human-chimpanzee ancestor explains its low divergence

description: * CoalHMM estimates in 1Mb chunks ILS09_gamma_aln_coord_clean_fixscale.csv Estimates for the full genome alignment obtained as described in Nature. 2012 Mar 7;483(7388):169-75. doi: 10.1038/nature10842. * Alignment statistics for the X chromosome chrX.statistics.csv This file has been generated by MafFilter on the the human, chimpanzee, gorilla and orangutan alignment. It contains counts on the various parsimony-informative sites. * ILS in 100 kb windows along the genome alignment. full_scan_100k.csv ILS computed by window scanning along the posterior decoding from the CoalHMM method. * Divergence ratios computed along the X chromosome. Compara.epo_6_primates_hsap-projected.chrXnew.subset.nogap.cleaned_aln.statistics.csv This file was generated by MafFilter on the X chromosome alignment. It contains the divergence estimates between human, chimpanzee, gorilla and orangutan in 100 kb windows. * Nucleotide diversity for the X chromosome in 14 human populations piX_100kb_regions.csv This file was generated from the 1000 Human Genomes Project data. * Genome coordinates of the 8 low-ILS regions PNILSR_1Mb_10pc_edited.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (Asian population)<br>Neanderthal_ASN.csv Coordinates are according to human hg19. * Coordinates of regions devoid of neanderthal introgression (European population)<br>Neanderthal_EUR.csv Coordinates are according to human hg19. * Ampliconic regions<br>AmpliconicRegions_hg19.csv Ampliconic regions in hg19 coordinates. The two last column describe is the region was included in our genome alignment, and if it was comprised in a low-ILS region.
DOI: 10.6084/m9.figshare.1408852.v1
title: Experimental-Computational Studies of Fatty Acids Distribution Networks in the Ruminal Microbiome based on the Perturbation Theory of Linear Free-Energy Relationships

description: Data set for Experimental-Computational Studies of Fatty Acids Distribution Networks in the Ruminal Microbiome based on the Perturbation Theory of Linear Free-Energy Relationships
DOI: 10.6084/m9.figshare.1408718
title: 480.fds

description: oct -data
DOI: 10.6084/m9.figshare.1408717
title: 466.fds

description: oct-data
DOI: 10.6084/m9.figshare.1408717.v1
title: 466.fds

description: oct-data
DOI: 10.6084/m9.figshare.1408706
title: 9-region of normal

description: retinal thickness of 9-region of normal for two methods
DOI: 10.6084/m9.figshare.1408707
title: 9-region glaucoma

description: retinal thickness of 9-region of glaucoma for two methods
DOI: 10.6084/m9.figshare.1408708
title: GCC of normal

description: retinal thickness of RNFL,RNFL_IPL and GCC of normal for two methods
DOI: 10.6084/m9.figshare.1408708.v1
title: GCC of normal

description: retinal thickness of RNFL,RNFL_IPL and GCC of normal for two methods
DOI: 10.6084/m9.figshare.1408692
title: Atlantic forest cover in Trajano de Moraes, Brazil: years 1978, 1988, 1999, 2006 and 2014

description: Atlantic forest cover maps of the municipality of Trajano de Moraes, Rio de Janeiro State, Southeastern Brazil, in years 1978, 1988, 1999, 2006 and 2014. Value 2 stands for class "Atlantic forest" and value 1 stands for class "matrix".
DOI: 10.6084/m9.figshare.1408705
title: GCC of glaucoma

description: retinal thickness of RNFL,RNFL_IPL and GCC of glaucoma for two methods
DOI: 10.6084/m9.figshare.1408706.v1
title: 9-region of normal

description: retinal thickness of 9-region of normal for two methods
DOI: 10.6084/m9.figshare.1408692.v1
title: Native forest cover in Trajano de Moraes, Brazil

description: Native forest cover in Trajano de Moraes, Brazil
DOI: 10.6084/m9.figshare.1408692.v2
title: Native forest cover in Trajano de Moraes, Brazil: years 1978, 1988, 1999, 2006 and 2014

description: We mapped forest cover of Trajano de Moraes, an Atlantic forest municipality in Southeastern Brazil, in five timeslots between years 1978 and 2014.
DOI: 10.6084/m9.figshare.1408643
title: Google Glass Real Time bug tracking System "Feedback"

description: Google Glass Realtime Bug Tracking system
DOI: 10.6084/m9.figshare.1408644
title: Glass 2017: The future of Google Glass

description: This is the future of Humanity and wearable devices
DOI: 10.6084/m9.figshare.1408675.v1
title: Let-7a regulates mammosphere formation capacity through Ras/NF-κB and Ras/MAPK/ERK pathway in breast cancer stem cells

description: ABSTRACTBreast cancer stem cells (BCSCs) have the greatest potential to maintain tumorigenesis in all subtypes of tumor cells and were regarded as the key drivers of tumor. Recent evidence has demonstrated that BCSCs contributed to a high degree of resistance to therapy. However, how BCSCs self renewal and tumorigenicity are maintained remains obscure. Herein, our study illustrated that overexpression of let-7a reduced cell proliferation and mammosphere formation ability of breast cancer stem cells(BCSCs) in a KRas-dependent manner through different pathways in vitro and in vivo. To be specific, we provided the evidence that let-7a was decreased, and reversely the expression of KRas was increased with moderate expression in early stages (I/II) and high expression in advanced stages (III/IV) in breast cancer specimens. In addition, the negative correlation between let-7a and KRas was clearly observed. In vitro, we found that let-7a inhibited mammosphere-forming efficiency and the mammosphere-size via NF-κB and MAPK/ERK pathway. The inhibitory effect of let-7a on mammosphere formation efficiency and the size of mammospheres was abolished after the depletion of KRas. On the contrary, enforced expression of KRas rescued the effect of let-7a. In vivo, let-7a inhibited the growth of tumors, whereas the negative effect of let-7a was rescued after overexpressing KRas. Taken together, our findings suggest that let-7a played a tumor suppressive role in a KRas-dependent manner.
DOI: 10.6084/m9.figshare.1408675.v2
title: Let-7a regulates mammosphere formation capacity through Ras/NF-κB and Ras/MAPK/ERK pathway in breast cancer stem cells

description: Breast cancer stem cells (BCSCs) have the greatest potential to maintain tumorigenesis in all subtypes of tumor cells and were regarded as the key drivers of tumor. Recent evidence has demonstrated that BCSCs contributed to a high degree of resistance to therapy. However, how BCSCs self renewal and tumorigenicity are maintained remains obscure. Herein, our study illustrated that overexpression of let-7a reduced cell proliferation and mammosphere formation ability of breast cancer stem cells(BCSCs) in a KRas-dependent manner through different pathways in vitro and in vivo. To be specific, we provided the evidence that let-7a was decreased, and reversely the expression of KRas was increased with moderate expression in early stages (I/II) and high expression in advanced stages (III/IV) in breast cancer specimens. In addition, the negative correlation between let-7a and KRas was clearly observed. In vitro, we found that let-7a inhibited mammosphere-forming efficiency and the mammosphere-size via NF-κB and MAPK/ERK pathway, respectively. The inhibitory effect of let-7a on mammosphere formation efficiency and the size of mammospheres was abolished after the depletion of KRas. On the contrary, enforced expression of KRas rescued the effect of let-7a. In vivo, let-7a inhibited the growth of tumors, whereas the negative effect of let-7a was rescued after overexpressing KRas. Taken together, our findings suggested that let-7a played a tumor suppressive role in a KRas-dependent manner.
DOI: 10.6084/m9.figshare.1408578
title: Palynological supplementary information Salamanca et al. 2016

description: <em>Supplementary data for the publication by Salamanca et al. 2016</em> This file includes the counts, sums, percentages and concentrations per diagram (cumulative, cluster and detailed diagrams). Additionally the file also includes the original count files (base-sheet) and the pollen concentration calculations. Finally, part of the palynological diversity discussed in the article is documented in a palynological diversity database as images and descriptive data (see references).
DOI: 10.6084/m9.figshare.1408578.v1
title: Palynological supplementary information Salamanca et al. 2016

description: <em>Supplementary data for the publication by Salamanca et al. 2016</em> This file includes the counts, sums, percentages and concentrations per diagram (cumulative, cluster and detailed diagrams). Additionally the file also includes the original count files (base-sheet) and the pollen concentration calculations. Finally, part of the palynological diversity discussed in the article is documented in a palynological diversity database as images and descriptive data (see references).
DOI: 10.7284/137905
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT42-07 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1408574
title: Gaussian Job Archive for C14H22Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.7284/137906
title: Fluorometer data collected during research cruise AT42-07 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.1408574.v1
title: Gaussian Job Archive for C14H22Br6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.7284/137902
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT42-07 using a C&C C-Nav 3050 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137903
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT42-07 using a Furuno GP-90D instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137912
title: Gyrocompass data collected during research cruise AT42-07 using a Sperry MK-37 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137907
title: Meteorological Station data collected during research cruise AT42-07 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137908
title: Meteorological Station data collected during research cruise AT42-07 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137911
title: Radiometer data collected during research cruise AT42-07 using a Eppley RAD instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/137904
title: Speedlog data collected during research cruise AT42-07 using a Furuno DS-50 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition