cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5993473
title: Identification of purple blotch pathogen of shallot by PCR using specific primer for Alternaria genus

description: Purple blotch (<i>Alternaria porri</i>), having symptom similar to stemphylium blight (<i>Stemphylium vesicarium</i>), is one of the important diseases that significantly lowered shallot yield in Indonesia. However, stemphylium blight has never been reported. Purple blotch pathogens from farmers’ crops in Bantul and experimental crop in Centre of Innovative Agricultural Technology Universitas Gadjah Mada (CIAT-UGM) Sleman Regencies were identified to observe whether <i>Stemphylium</i> sp. was found with <i>A. porri</i>. Thirteen isolates obtained showed variability in colony texture, colour and pigmentation. DNA fingerprinting through Polymerase Chain Reaction of BOX and Enterobacterial Repetitive Intergenic Consensus region dispersed those isolates into two main groups. Identification using Alternaria-specific primers, Dir1ITSAlt/Inv1ITSAlt revealed that 10 isolates were <i>Stemphylium</i> sp. and 3 isolates were <i>Alternaria</i> sp. <i>A. porri</i> was only identified from CIAT-UGM. This finding emphasise that the Alternaria-specific primer was able to amplify <i>Stemphylium</i> sp. Besides, stemphylium blight disease may have been occurred in farmers’ crops in Bantul.
DOI: 10.6084/m9.figshare.5993473.v1
title: Identification of purple blotch pathogen of shallot by PCR using specific primer for Alternaria genus

description: Purple blotch (<i>Alternaria porri</i>), having symptom similar to stemphylium blight (<i>Stemphylium vesicarium</i>), is one of the important diseases that significantly lowered shallot yield in Indonesia. However, stemphylium blight has never been reported. Purple blotch pathogens from farmers’ crops in Bantul and experimental crop in Centre of Innovative Agricultural Technology Universitas Gadjah Mada (CIAT-UGM) Sleman Regencies were identified to observe whether <i>Stemphylium</i> sp. was found with <i>A. porri</i>. Thirteen isolates obtained showed variability in colony texture, colour and pigmentation. DNA fingerprinting through Polymerase Chain Reaction of BOX and Enterobacterial Repetitive Intergenic Consensus region dispersed those isolates into two main groups. Identification using Alternaria-specific primers, Dir1ITSAlt/Inv1ITSAlt revealed that 10 isolates were <i>Stemphylium</i> sp. and 3 isolates were <i>Alternaria</i> sp. <i>A. porri</i> was only identified from CIAT-UGM. This finding emphasise that the Alternaria-specific primer was able to amplify <i>Stemphylium</i> sp. Besides, stemphylium blight disease may have been occurred in farmers’ crops in Bantul.
DOI: 10.6084/m9.figshare.5993416.v1
title: Epoly SNP data

description: ~ 2.38m filtered SNPs with MAF &gt; 0.05, used for GWAS and genomic prediction
DOI: 10.6084/m9.figshare.5993416.v2
title: Eucalyptus polybractea genome-wide SNP and phenotype data

description: ~ 2.38m filtered SNPs with MAF &gt; 0.05, used for GWAS and genomic prediction
DOI: 10.6084/m9.figshare.5993413
title: Structural Priming in Sentence Comprehension: a single primeis enough - online data

description: For the complete description of the materials and methods we refer the reader to the published paper.
DOI: 10.6084/m9.figshare.5993377
title: Aerosol optical properties

description: <b>Schematic of different aerosol optical properties with emphasis on light absorption.</b><br><br>This figure is shared for educational purposes. Feel free to use it in your slides. Figure modification is also allowed under the terms of the CC BY 4.0 license.<br><br>The values shown in the picture are taken from Bond and Bergstrom (2006), https://doi.org/10.1080/02786820500421521<br><br><br><br><br><br>
DOI: 10.6084/m9.figshare.5993170
title: Sibbald 1684 Species Data from Robert sibbald'S <i>Scotia Illustrata</i> (1684): a faunal baseline for britain

description: 86 The dataset given here is a list of every identifiable species from this text, divided into domesticated species, amphibians, reptiles, mammals, birds, fish and invertebrates. The dataset gives (as far as possible) species-level identifications of the fauna Sibbald identified as living in Scotland. The ‘Identified by Linnaeus’ column indicates where the name Sibbald uses for each species was either adopted by Linnaeus, or where Linnaeus lists the name as an accepted alternative – in either of these cases, the identification of species is more secure. I also have a column to indicate whether the name in Sibbald has been previously identified – either in Mullens’ translation, in Adamson's notes on Sibbald's History of Fife & Kinross, or in the Dictionary of the Scottish Language (DSL). The criteria for an identification to be labelled as ‘Secure’ are described in the article above.
DOI: 10.6084/m9.figshare.5993170.v1
title: Sibbald 1684 Species Data from Robert sibbald'S <i>Scotia Illustrata</i> (1684): a faunal baseline for britain

description: 86 The dataset given here is a list of every identifiable species from this text, divided into domesticated species, amphibians, reptiles, mammals, birds, fish and invertebrates. The dataset gives (as far as possible) species-level identifications of the fauna Sibbald identified as living in Scotland. The ‘Identified by Linnaeus’ column indicates where the name Sibbald uses for each species was either adopted by Linnaeus, or where Linnaeus lists the name as an accepted alternative – in either of these cases, the identification of species is more secure. I also have a column to indicate whether the name in Sibbald has been previously identified – either in Mullens’ translation, in Adamson's notes on Sibbald's History of Fife & Kinross, or in the Dictionary of the Scottish Language (DSL). The criteria for an identification to be labelled as ‘Secure’ are described in the article above.
DOI: 10.6084/m9.figshare.5993164
title: Gene alignments and phylogenetic trees, for multilocus phylogeny of Clostridium beijerincki strains - Dataset S1

description: Single maker alignments, evolutionary models, supermatrix and phylogenetic tree in newick format for Figure S1 in Fonseca et al 2018.
DOI: 10.6084/m9.figshare.5993164.v2
title: Gene alignments and phylogenetic trees, for multilocus phylogeny of Clostridium beijerincki strains - Dataset S1

description: Single maker alignments, evolutionary models, supermatrix and phylogenetic tree in newick format for Figure S1 in Fonseca et al 2018.
DOI: 10.6084/m9.figshare.5993164.v1
title: Gene alignments and phylogenetic trees, for multilocus phylogeny of Clostridium beijerincki strains - Dataset S1

description: Single maker alignments, evolutionary models, supermatrix and phylogenetic tree in newick format for Figure S1 in Fonseca et al 2018.
DOI: 10.17028/rd.lboro.5993131
title: Supplementary Information Figures for Effect of Mass Transport on the Electrochemical Oxidation of Alcohols over Electrodeposited film and Carbon- Supported Pt electrodes

description: Supplementary Information Figures for Effect of Mass Transport on the Electrochemical Oxidation of Alcohols over Electrodeposited film and Carbon- Supported Pt electrodes<br>AbstractElectrochemical oxidation of four different alcohol molecules (methanol, ethanol, <em>n</em>-butanol and 2-butanol) at electrodeposited Pt film and carbon-supported Pt catalyst film electrodes, as well as the effect of mass transport on the oxidation reaction, has been studied systematically using the rotating disk electrode (RDE) technique. It was shown that oxidation current decreased with an increase in the rotation rate (ω) for all alcohols studied over electrodeposited Pt film electrodes. In contrast, the oxidation current was found to increase with an increase in the ω for Pt/C in ethanol and <em>n</em>-butanol-containing solutions. The decrease was found to be nearly reversible for ethanol and <em>n</em>-butanol at the electrodeposited Pt film electrode ruling out the possibility of intermediate CO<sub>ads</sub> poisoning being the sole cause of the decrease and was attributed to the formation of soluble intermediate species which diffuse away from the electrode at higher ω. In contrast, an increase in the current with an increase in ω for the carbon supported catalyst may suggest that the increase in residence time of the soluble species within the catalyst layer, results in further oxidation of these species. Furthermore, the reversibility of the peak current on decreasing the ω could indicate that the surface state has not significantly changed due to the sluggish reaction kinetics of ethanol and <em>n</em>-butanol.
DOI: 10.17028/rd.lboro.5993131.v1
title: Supplementary Information Figures for Effect of Mass Transport on the Electrochemical Oxidation of Alcohols over Electrodeposited film and Carbon- Supported Pt electrodes

description: Supplementary Information Figures for Effect of Mass Transport on the Electrochemical Oxidation of Alcohols over Electrodeposited film and Carbon- Supported Pt electrodes<br>AbstractElectrochemical oxidation of four different alcohol molecules (methanol, ethanol, <em>n</em>-butanol and 2-butanol) at electrodeposited Pt film and carbon-supported Pt catalyst film electrodes, as well as the effect of mass transport on the oxidation reaction, has been studied systematically using the rotating disk electrode (RDE) technique. It was shown that oxidation current decreased with an increase in the rotation rate (ω) for all alcohols studied over electrodeposited Pt film electrodes. In contrast, the oxidation current was found to increase with an increase in the ω for Pt/C in ethanol and <em>n</em>-butanol-containing solutions. The decrease was found to be nearly reversible for ethanol and <em>n</em>-butanol at the electrodeposited Pt film electrode ruling out the possibility of intermediate CO<sub>ads</sub> poisoning being the sole cause of the decrease and was attributed to the formation of soluble intermediate species which diffuse away from the electrode at higher ω. In contrast, an increase in the current with an increase in ω for the carbon supported catalyst may suggest that the increase in residence time of the soluble species within the catalyst layer, results in further oxidation of these species. Furthermore, the reversibility of the peak current on decreasing the ω could indicate that the surface state has not significantly changed due to the sluggish reaction kinetics of ethanol and <em>n</em>-butanol.
DOI: 10.6084/m9.figshare.5993101
title: FACTORS THAT FEMALE HIGHER EDUCATION FACULTY IN SELECT SCIENCE, TECHNOLOGY, ENGINEERING, AND MATHEMATICS (STEM) FIELDS PERCEIVE AS BEING INFLUENTIAL TO THEIR SUCCESS AND PERSISTENCE IN THEIR CHOSEN PROFESSIONS

description: This is a dissertation submitted in partial fulfillment of Doctor of Philosophy degree from Old Dominion University. The study sought to discover factors female higher education faculty in select science, technology, engineering, and mathematics (STEM) fields perceived as influential to their success and persistence in their chosen professions. Females are underrepresented in STEM professions including academia, despite the fact that female educational attainment in all fields have increased significantly. <br>
DOI: 10.6084/m9.figshare.5993101.v1
title: FACTORS THAT FEMALE HIGHER EDUCATION FACULTY IN SELECT SCIENCE, TECHNOLOGY, ENGINEERING, AND MATHEMATICS (STEM) FIELDS PERCEIVE AS BEING INFLUENTIAL TO THEIR SUCCESS AND PERSISTENCE IN THEIR CHOSEN PROFESSIONS

description: This is a dissertation submitted in partial fulfillment of Doctor of Philosophy degree from Old Dominion University. The study sought to discover factors female higher education faculty in select science, technology, engineering, and mathematics (STEM) fields perceived as influential to their success and persistence in their chosen professions. Females are underrepresented in STEM professions including academia, despite the fact that female educational attainment in all fields have increased significantly. <br>
DOI: 10.17028/rd.lboro.5993038
title: Supplementary files for article Distributed Task Rescheduling With Time Constraints for the Optimization of Total Task Allocations in a Multirobot System

description: Supplementary files for article Distributed Task Rescheduling With Time Constraints for the Optimization of Total Task Allocations in a Multirobot System<br> <strong>Abstract:</strong> This paper considers the problem of maximizing the number of task allocations in a distributed multirobot system under strict time constraints, where other optimization objectives need also be considered. It builds upon existing distributed task allocation algorithms, extending them with a novel method for maximizing the number of task assignments. The fundamental idea is that a task assignment to a robot has a high cost if its reassignment to another robot creates a feasible time slot for unallocated tasks. Multiple reassignments among networked robots may be required to create a feasible time slot and an upper limit to this number of reassignments can be adjusted according to performance requirements. A simulated rescue scenario with task deadlines and fuel limits is used to demonstrate the performance of the proposed method compared with existing methods, the consensus-based bundle algorithm and the performance impact (PI) algorithm. Starting from existing (PI-generated) solutions, results show up to a 20% increase in task allocations using the proposed method.<br> DESCRIPTION: The supplementary table compares the performance of different task allocation algorithms.
DOI: 10.17028/rd.lboro.5993038.v1
title: Supplementary files for article Distributed Task Rescheduling With Time Constraints for the Optimization of Total Task Allocations in a Multirobot System

description: Supplementary files for article Distributed Task Rescheduling With Time Constraints for the Optimization of Total Task Allocations in a Multirobot System<br> <strong>Abstract:</strong> This paper considers the problem of maximizing the number of task allocations in a distributed multirobot system under strict time constraints, where other optimization objectives need also be considered. It builds upon existing distributed task allocation algorithms, extending them with a novel method for maximizing the number of task assignments. The fundamental idea is that a task assignment to a robot has a high cost if its reassignment to another robot creates a feasible time slot for unallocated tasks. Multiple reassignments among networked robots may be required to create a feasible time slot and an upper limit to this number of reassignments can be adjusted according to performance requirements. A simulated rescue scenario with task deadlines and fuel limits is used to demonstrate the performance of the proposed method compared with existing methods, the consensus-based bundle algorithm and the performance impact (PI) algorithm. Starting from existing (PI-generated) solutions, results show up to a 20% increase in task allocations using the proposed method.<br> DESCRIPTION: The supplementary table compares the performance of different task allocation algorithms.
DOI: 10.6084/m9.figshare.5993008.v2
title: Analyzing the pathways enriched in genes associated with nicotine dependence in the context of human protein–protein interaction network

description: Nicotine dependence is the primary addictive stage of cigarette smoking. Although a lot of studies have been performed to explore the molecular mechanism underlying nicotine dependence, our understanding on this disorder is still far from complete. Over the past decades, an increasing number of candidate genes involved in nicotine dependence have been identified by different technical approaches, including the genetic association analysis. In this study, we performed a comprehensive collection of candidate genes reported to be genetically associated with nicotine dependence. Then, the biochemical pathways enriched in these genes were identified by considering the gene’s propensity to be related to nicotine dependence. One of the most widely used pathway enrichment analysis approach, over-representation analysis, ignores the function non-equivalence of genes in candidate gene set and may have low discriminative power in identifying some dysfunctional pathways. To overcome such drawbacks, we constructed a comprehensive human protein–protein interaction network, and then assigned a function weighting score to each candidate gene based on their network topological features. Evaluation indicated the function weighting score scheme was consistent with available evidence. Finally, the function weighting scores of the candidate genes were incorporated into pathway analysis to identify the dysfunctional pathways involved in nicotine dependence, and the interactions between pathways was detected by pathway crosstalk analysis. Compared to conventional over-representation-based pathway analysis tool, the modified method exhibited improved discriminative power and detected some novel pathways potentially underlying nicotine dependence. In summary, we conducted a comprehensive collection of genes associated with nicotine dependence and then detected the biochemical pathways enriched in these genes using a modified pathway enrichment analysis approach with function weighting score of candidate genes integrated. Our results may provide insight into the molecular mechanism underlying nicotine dependence.
DOI: 10.6084/m9.figshare.5992993
title: Supplementary Material for: The Role of Epithelial <b><i>Stat3</i></b> in Amelogenesis during Mouse Incisor Renewal

description: The aim of this study was to evaluate the role of epithelial signal transducer and activator of transcription 3 (STAT3) in mouse incisor amelogenesis. Since <i>Stat3</i> is expressed in the epithelial component of developing and adult mouse teeth, we generated and analyzed <i>Krt14</i><sup>Cre/+</sup>;<i>Stat3</i><sup>fl/fl</sup> mutant mice in which <i>Stat3</i> was inactivated in epithelia including ameloblast progenitors and ameloblasts, the cells responsible for enamel formation. Histological analysis showed little enamel matrix in mutant incisors compared to controls. Delayed incisor enamel mineralization was demonstrated using micro-computed X-ray tomography analysis and was supported by an increase in the pre-expression distance of enamel-enriched proteins such as amelogenin, ameloblastin, and kallikrein-4. Lastly, scanning electron microscopy analysis showed little enamel mineralization in mutant incisors underneath the mesial root of the 1st molar; however, the micro-architecture of enamel mineralization was similar in the erupted portion of control and mutant incisors. Taken together, our findings demonstrate for the first time that the absence of epithelial <i>Stat3</i> in mice leads to delayed incisor amelogenesis.
DOI: 10.6084/m9.figshare.5992993.v1
title: Supplementary Material for: The Role of Epithelial <b><i>Stat3</i></b> in Amelogenesis during Mouse Incisor Renewal

description: The aim of this study was to evaluate the role of epithelial signal transducer and activator of transcription 3 (STAT3) in mouse incisor amelogenesis. Since <i>Stat3</i> is expressed in the epithelial component of developing and adult mouse teeth, we generated and analyzed <i>Krt14</i><sup>Cre/+</sup>;<i>Stat3</i><sup>fl/fl</sup> mutant mice in which <i>Stat3</i> was inactivated in epithelia including ameloblast progenitors and ameloblasts, the cells responsible for enamel formation. Histological analysis showed little enamel matrix in mutant incisors compared to controls. Delayed incisor enamel mineralization was demonstrated using micro-computed X-ray tomography analysis and was supported by an increase in the pre-expression distance of enamel-enriched proteins such as amelogenin, ameloblastin, and kallikrein-4. Lastly, scanning electron microscopy analysis showed little enamel mineralization in mutant incisors underneath the mesial root of the 1st molar; however, the micro-architecture of enamel mineralization was similar in the erupted portion of control and mutant incisors. Taken together, our findings demonstrate for the first time that the absence of epithelial <i>Stat3</i> in mice leads to delayed incisor amelogenesis.
DOI: 10.6084/m9.figshare.5992984
title: Supplementary Material for: A importância da avaliação da qualidade percebida em radiologia e o impacto dos fatores sociodemográficos num hospital público português

description: <b><i>Contexto:</i></b> A avaliação da qualidade percebida é uma peça fundamental para a gestão da qualidade em saúde. Este estudo recorre ao SERVQUAL para avaliar a qualidade percebida pelos utentes da radiologia de um hospital público português e o impacto que os fatores sociodemográficos exercem sobre a mesma. A radiologia do hospital não possuía uma avaliação recente da qualidade, nem conhecia o impacto dos fatores sociodemográficos. Também não existem estudos com aplicação do SERVQUAL em radiologia e os resultados de estudos existentes sobre o impacto dos fatores sociodemográficos na qualidade percebida são controversos. <b><i>Objetivos:</i></b> Avaliar (1) a qualidade percebida pelos utentes, (2) a relação entre a qualidade percebida e os fatores sociodemográficos dos utentes, (3) a relação entre a qualidade percebida e estado de saúde subjetivo dos utentes e (4) a relação entre a qualidade percebida e a qualidade da informação recebida pelos utentes. <b><i>Materiais e métodos:</i></b> Estudo quantitativo e transversal tendo como instrumento de recolha de dados uma versão modificada do SERVQUAL. <b><i>Resultados:</i></b> Os resultados obtidos mostraram que os índices da qualidade percebida dos utentes da radiologia são apenas correlacionados com o grau de escolaridade e com a qualidade da informação recebida. <b><i>Conclusão:</i></b> Os resultados sugerem que os utentes esperam mais da radiologia, uma vez que as suas perceções da qualidade do serviço não atingem o nível das expetativas. Os resultados sugerem também uma influência positiva significativa da qualidade da informação recebida sobre a qualidade percebida do serviço e uma influencia negativa significativa da escolaridade sobre a qualidade percebida. Os resultados sugerem ainda que monitorizar a qualidade do serviço percebido pelos utentes permitiria não só planear estratégias precisas de intervenção de alta efetividade no departamento de radiologia, como também monitorizar a resposta a essas ações, trazendo deste modo benefícios para a melhoria da qualidade dos cuidados prestados.
DOI: 10.6084/m9.figshare.5992975
title: Handouts - Ten Lectures on Natural Semantic Metalanguage

description: This lively lecture series by a leading expert introduces the theory, practice and application of a versatile, rigorous and well-developed approach to cross-linguistic semantics: the NSM approach originated by Anna Wierzbicka. Topics include: history and philosophy of the study of meaning, semantic primes and molecules, emotions, evaluation, verbs and event structure, cultural key words and scripts. Case studies come from English, Chinese, Danish, and other languages. Applications in language teaching and intercultural education are also covered, along with comparisons between NSM and other leading approaches to linguistic semantics. The book will appeal to students and scholars of linguistics at all levels, communication and translation scholars, and anyone interested in a systematic and non Anglocentric approach to meaning, culture and cognition.