cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17132406.v1
title: The spatial and temporal occurrence and significance of dinoflagellates and other marine fossils within onshore coal measures, Gippsland Basin, Australia

description: Relationships between terrestrial formations in the central Latrobe Valley of southeastern Australia and coeval terrestrial and marine formations further to the east have been elucidated over the past several decades. In the Gippsland Basin’s Latrobe Valley and Seaspray depressions, Eocene to Miocene fossils including rare foraminifera and more common dinoflagellates have been recovered from all five interseam sediments in the Morwell Formation, six interseam splits within the Traralgon Formation that includes age diagnostic <i>Gippslandia extensa</i>, and three interseams in the Alberton coal measures. The dinoflagellate assemblages generally are species-poor but do provide some age control and indicate episodic marine conditions within the Latrobe Valley Coal Measures. Some dinoflagellates may tolerate lower salinity near-shore waters, but above the Eocene acme of <i>Gippslandia extensa</i> are interpreted to indicate offshore conditions. The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines. KEY POINTSFossils, including rare foraminifera and more common dinoflagellates, have been recovered from all five interseam sediments in Gippsland Basins Morwell Formation, six interseam splits within the Traralgon Formation and three interseams in the Alberton coal measures.Six interseam splits within the Traralgon Formation include the age diagnostic <i>Gippslandia extensa</i>, which indicates a late Eocene (latest Bartonian to Priabonian) age.Species of <i>Spiniferites, Operculodinium</i> and <i>Hystrichokolpoma</i> dominate in the coal interseams in the Morwell and Alberton formations (Oligocene and Miocene ages) and reflect typical species found in the <i>Operculodinium</i> Superzone of Partridge.The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines. Fossils, including rare foraminifera and more common dinoflagellates, have been recovered from all five interseam sediments in Gippsland Basins Morwell Formation, six interseam splits within the Traralgon Formation and three interseams in the Alberton coal measures. Six interseam splits within the Traralgon Formation include the age diagnostic <i>Gippslandia extensa</i>, which indicates a late Eocene (latest Bartonian to Priabonian) age. Species of <i>Spiniferites, Operculodinium</i> and <i>Hystrichokolpoma</i> dominate in the coal interseams in the Morwell and Alberton formations (Oligocene and Miocene ages) and reflect typical species found in the <i>Operculodinium</i> Superzone of Partridge. The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines.
DOI: 10.6084/m9.figshare.19100403
title: Provenance of sandstones in the Hastings Block, southern New England Orogen: implications for tectonic setting

description: The Devonian–Carboniferous sandstones in the Hastings Block, southern New England Orogen have a predominantly arc-like provenance based on ternary QFL or QmFLt ternary diagrams and have a lower quartz content than Permian sandstones. Stratigraphically correlated formations show similar QFL components but not the same patterns of sandstone compositional variability for formations that outcrop over a wide area such as the Mingaletta and Pappinbarra formations. It is possible to correlate most of the petrological intervals in the Tamworth Belt with the Hastings Block. The trend of petrofacies from Devonian to Permian for the southern Tamworth Belt, Tamworth Belt overall and Hastings Block, is towards sandstone with more monocrystalline quartz and less feldspar and lithics. The areal pattern of sandstone compositions within individual formations shows similarities in the percentage of quartz, feldspar or lithics. This suggests areal continuity of sandstone compositions within a formation during deposition and that the faulting did not substantially change the formations continuity at the time of deposition. The arc-like provenance of Devonian to Permian sandstones within the Hastings Block indicates that the block was likely an along-strike continuation of the Tamworth Belt. KEY POINTSThe Devonian–Carboniferous sandstones have predominantly arc-like provenance on QFL or QmFLt ternary plots with a higher quartz content in younger formations.The Hastings Block and Tamworth Belt sandstones of comparable age are similar but not the same on ternary QFL and QmFLt plots.The areal pattern of the composition of sandstones within formations suggests that faulting was not active during deposition. The Devonian–Carboniferous sandstones have predominantly arc-like provenance on QFL or QmFLt ternary plots with a higher quartz content in younger formations. The Hastings Block and Tamworth Belt sandstones of comparable age are similar but not the same on ternary QFL and QmFLt plots. The areal pattern of the composition of sandstones within formations suggests that faulting was not active during deposition.
DOI: 10.6084/m9.figshare.17132406
title: The spatial and temporal occurrence and significance of dinoflagellates and other marine fossils within onshore coal measures, Gippsland Basin, Australia

description: Relationships between terrestrial formations in the central Latrobe Valley of southeastern Australia and coeval terrestrial and marine formations further to the east have been elucidated over the past several decades. In the Gippsland Basin’s Latrobe Valley and Seaspray depressions, Eocene to Miocene fossils including rare foraminifera and more common dinoflagellates have been recovered from all five interseam sediments in the Morwell Formation, six interseam splits within the Traralgon Formation that includes age diagnostic <i>Gippslandia extensa</i>, and three interseams in the Alberton coal measures. The dinoflagellate assemblages generally are species-poor but do provide some age control and indicate episodic marine conditions within the Latrobe Valley Coal Measures. Some dinoflagellates may tolerate lower salinity near-shore waters, but above the Eocene acme of <i>Gippslandia extensa</i> are interpreted to indicate offshore conditions. The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines. KEY POINTSFossils, including rare foraminifera and more common dinoflagellates, have been recovered from all five interseam sediments in Gippsland Basins Morwell Formation, six interseam splits within the Traralgon Formation and three interseams in the Alberton coal measures.Six interseam splits within the Traralgon Formation include the age diagnostic <i>Gippslandia extensa</i>, which indicates a late Eocene (latest Bartonian to Priabonian) age.Species of <i>Spiniferites, Operculodinium</i> and <i>Hystrichokolpoma</i> dominate in the coal interseams in the Morwell and Alberton formations (Oligocene and Miocene ages) and reflect typical species found in the <i>Operculodinium</i> Superzone of Partridge.The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines. Fossils, including rare foraminifera and more common dinoflagellates, have been recovered from all five interseam sediments in Gippsland Basins Morwell Formation, six interseam splits within the Traralgon Formation and three interseams in the Alberton coal measures. Six interseam splits within the Traralgon Formation include the age diagnostic <i>Gippslandia extensa</i>, which indicates a late Eocene (latest Bartonian to Priabonian) age. Species of <i>Spiniferites, Operculodinium</i> and <i>Hystrichokolpoma</i> dominate in the coal interseams in the Morwell and Alberton formations (Oligocene and Miocene ages) and reflect typical species found in the <i>Operculodinium</i> Superzone of Partridge. The occurrence of dinoflagellates between seams of the Latrobe Valley and Alberton coal measures within the Gippsland Basin provides useful paleogeographic information, constraining paleo-shorelines.
DOI: 10.6084/m9.figshare.19632867
title: Data for "Conservation of energetic pathways for electroautotrophy in the uncultivated candidate order Tenderiales"

description: Metagenomic assembled genome bins and annotations used for comparative genomics to identify conserved energetic pathways within the candidate order <em>Tenderiales</em>
DOI: 10.5281/zenodo.6534030
title: GAIA model simulate data of doubled CO2 (Forces, advections, and winds)

description: This dataset contains forces, advections, and winds output from the GAIA model, that are related to the Figures in the paper. The forces and advections are divided by the Coriolis parameter or a zonal mean absolute vorticity.
DOI: 10.5281/zenodo.5944787
title: GAIA model simulate data of doubled CO2 (Forces, advections, and winds)

description: This dataset contains forces, advections, and winds output from the GAIA model, that are related to the Figures in the paper. The forces and advections are divided by the Coriolis parameter or a zonal mean absolute vorticity.
DOI: 10.21227/1t59-de68
title: ProVerif codes for "Ultra-Lightweight and Secure Blockchain-Assisted Charging Scheduling Scheme For Vehicular Edge Networks By Utilization of NanoPi NEO" (10.1109/TVT.2022.3173076)

description: “ProVerif” is a powerful utility designed to examine “reachability properties,” “correspondence assertions,” and “observational equivalences.” Our protocol modelling addresses both the elemental security requirements, like “impersonation” or “replay” attack, and the most advanced ones, like “perfect forward secrecy” or “password guessing attack.” Because we have a limited space here, the program source codes have been attached to this article and can be downloaded as a separate file. The codes can be tested online.
DOI: 10.25345/c51c1tk4g
title: MassIVE MSV000089448 - Coenzyme A binding sites induce proximal acylation across protein families
title: Lysine acylations, such as acetylation, succinylation, or glutarylation, are post-translational modifications that regulate protein function. In mitochondria, lysine acylation is predominantly non-enzymatic and only a specific subset of the proteome has been identified as acylated. Coenzyme A (CoA), a metabolite required in several metabolic pathways, can act as an acyl group carrier via a thioester bond. However, what controls the acylation of lysine residues in the mitochondria remains poorly understood. Using published datasets, we found that proteins with a CoA-binding site are more likely to be acetylated, succinylated, and glutarylated. Using computational modeling, we discovered that, in CoA-binding proteins, lysine residues near the CoA-binding pocket are more likely to be acylated than those far away from the CoA-binding pocket. We hypothesized that acyl-CoA binding enhances the acylation of nearby lysine residues. To experimentally test this hypothesis, we used enoyl-CoA hydratase short chain 1 (ECHS1), a mitochondrial protein with a CoA-binding pocket, and co-incubated ECHS1 with succinyl-CoA and CoA. Using mass spectrometry, we found that succinyl-CoA induced widespread lysine succinylation and that CoA competitively inhibited ECHS1 succinylation. In addition, CoA-induced inhibition at a particular lysine site was inversely correlated with the distance between this lysine residue and the CoA-binding pocket. This indicated that CoA acts as a competitive inhibitor of ECHS1 succinylation by binding to the CoA-binding pocket. Together, this study suggests proximal acylation at protein CoA-binding sites is a primary mechanism for lysine acylation in the mitochondria.
DOI: 10.5281/zenodo.6534052
title: Test Test

description: Test Test
DOI: 10.5281/zenodo.6532821
title: Fine-scale population spatialization data of China in 2018 based on real location-based big data

description: <strong>This data contains a geospatial population raster layer in GeoTIFF format with 1*1 km resolution for 31 provincial regions (2851 counties) of China in 2018 (pop2018.tif). It also provides the Tencent positioning data in 2018 (TN_hSum2018.tif), the table of statistical population of 2851 counties (statistical_population_2018_china_county.xls) and its vector map (statisitcal_pop.shp) and codes (code.docx).</strong>
DOI: 10.5281/zenodo.4661028
title: Fine-scale population spatialization data of China in 2018 based on real location-based big data

description: <strong>This data contains a geospatial population raster layer in GeoTIFF format with 1*1 km resolution for 31 provincial regions (2851 counties) of China in 2018 (pop2018.tif). It also provides the Tencent positioning data in 2018 (TN_hSum2018.tif), the table of statistical population of 2851 counties (statistical_population_2018_china_county.xls) and its vector map (statisitcal_pop.shp) and codes (code.docx).</strong>
DOI: 10.5281/zenodo.6463635
title: Structural basis for Parkinson's Disease-linked LRRK2's binding to microtubules

description: This dataset includes all of the tabular data used in the figures in the article. Original article is available at: https://doi.org/10.1101/2022.01.21.477284 Leucine Rich Repeat Kinase 2 (<em>LRRK2</em>) is one of the most commonly mutated genes in familial Parkinson’s Disease (PD). Under some circumstances, LRRK2 co-localizes with microtubules in cells, an association enhanced by PD mutations. We report a cryo-electron microscopy structure of the catalytic half of LRRK2, containing its kinase, which is in a closed conformation, and GTPase domains, bound to microtubules. We also report a structure of the catalytic half of LRRK1, which is closely related to LRRK2, but is not linked to PD. LRRK1’s structure is similar to LRRK2, but LRRK1 does not interact with microtubules. Guided by these structures, we identify amino acids in LRRK2’s GTPase domain that mediate microtubule binding; mutating them disrupts microtubule binding in vitro and in cells, without affecting LRRK2’s kinase activity. Our results have implications for the design of therapeutic LRRK2 kinase inhibitors.
description: The Excel file includes all of the raw data used for figures in the article. Each sheet is labeled with the name of the figure it belongs to and includes its own legend.
DOI: 10.5281/zenodo.6463634
title: Structural basis for Parkinson's Disease-linked LRRK2's binding to microtubules

description: This dataset includes all of the tabular data used in the figures in the article. Original article is available at: https://doi.org/10.1101/2022.01.21.477284 Leucine Rich Repeat Kinase 2 (<em>LRRK2</em>) is one of the most commonly mutated genes in familial Parkinson’s Disease (PD). Under some circumstances, LRRK2 co-localizes with microtubules in cells, an association enhanced by PD mutations. We report a cryo-electron microscopy structure of the catalytic half of LRRK2, containing its kinase, which is in a closed conformation, and GTPase domains, bound to microtubules. We also report a structure of the catalytic half of LRRK1, which is closely related to LRRK2, but is not linked to PD. LRRK1’s structure is similar to LRRK2, but LRRK1 does not interact with microtubules. Guided by these structures, we identify amino acids in LRRK2’s GTPase domain that mediate microtubule binding; mutating them disrupts microtubule binding in vitro and in cells, without affecting LRRK2’s kinase activity. Our results have implications for the design of therapeutic LRRK2 kinase inhibitors.
description: The Excel file includes all of the raw data used for figures in the article. Each sheet is labeled with the name of the figure it belongs to and includes its own legend.
DOI: 10.6084/m9.figshare.19721656.v1
title: Tree survey data

description: Tree diameter and coordinate data obtained by iPhone, iPad, and conventional survey methods in a 1 ha forest plot in Hokkaido, Japan (42°59'57" N, 141°23'29" E).
DOI: 10.25949/19694998.v1
title: Force-Matching Task Data Files and Analysis Code

description: The force-matching task integrates haptic technology and electrical engineering to determine an individual’s level of sensory attenuation to somatic stimuli. The task requires a detailed methodology to facilitate reliable and replicable estimates, and there has been a distinct lack of re-evaluation of the methodological processes related to this paradigm. In this task, subjects are asked to match a force delivered to their finger, either by pressing directly on their own finger with their other hand (known as the direct condition) or by controlling the device using an external potentiometer to control the force indirectly through a torque motor (known as the slider condition). We analysed N=138 subjects to determine 1) the optimal number of replications (2, 4, 6 or 8 replications) of the target force, 2) the optimal time-window (1-1.5s, 1.5-2s, 2-2.5s and 2.5-3s) to extract the estimate of sensory attenuation, 3) if participants’ performance during the task improved, worsened or was stable across the experimental period regardless of condition, and 4) if learning effects were related to psychological traits. <br> .do script file can be read using STATA
DOI: 10.25949/19694998
title: Force-Matching Task Data Files and Analysis Code

description: The force-matching task integrates haptic technology and electrical engineering to determine an individual’s level of sensory attenuation to somatic stimuli. The task requires a detailed methodology to facilitate reliable and replicable estimates, and there has been a distinct lack of re-evaluation of the methodological processes related to this paradigm. In this task, subjects are asked to match a force delivered to their finger, either by pressing directly on their own finger with their other hand (known as the direct condition) or by controlling the device using an external potentiometer to control the force indirectly through a torque motor (known as the slider condition). We analysed N=138 subjects to determine 1) the optimal number of replications (2, 4, 6 or 8 replications) of the target force, 2) the optimal time-window (1-1.5s, 1.5-2s, 2-2.5s and 2.5-3s) to extract the estimate of sensory attenuation, 3) if participants’ performance during the task improved, worsened or was stable across the experimental period regardless of condition, and 4) if learning effects were related to psychological traits. <br> .do script file can be read using STATA
DOI: 10.6084/m9.figshare.19395035
title: Detrital zircon and apatite U-Pb geochronology of Ediacaran fossil–bearing strata spanning the late Ediacaran–Cambrian boundary in central Iran

description: The Neoproterozoic successions exposed in the Koushk and Chahmir areas of central Iran include both volcanic, and shallow to deep marine siliciclastic and carbonate units. We obtained detrital zircon dates from tuffaceous shales bearing Ediacaran fossils, including <i>Corumbella</i>, <i>Persimedusites</i>, ?<i>Kimberella</i>, ?<i>Cloudina</i>, and <i>Namalia</i>-like forms, together with a single metazoan holdfast structure from the Dargazin area of the Koushk region that correlates with the upper part of the Wedge succession dated at 555 ± 14 Ma. Zircon grains of the tuffaceous siltstones containing <i>Corumbella</i>, <i>Persimedusites</i>, ?<i>Kimberella</i>, ?<i>Cloudina</i>, <i>Namalia</i>-like structures, ?<i>Spriggina</i>, ?<i>Pteridinium</i>, holdfasts and algae-like branching structures in the Wedge section of the Koushk area, produced an age of 581 ± 9 Ma, whereas pyroclastic sandstones bearing <i>Corumbella</i>, <i>Persimedusites</i>, a possible holdfast, ?<i>Pteridinium</i>, ?<i>Cloudina</i>, algae-like branched structure, possible trace fossils and marine algal remains in the Chahmir area yielded an age of 541 ± 5 Ma. Zircon dates from the Dargazin and Wedge deposits are of late Ediacaran and Chahmir strata are of a late Ediacaran to early Cambrian age. Ages of the Chahmir sedimentary rocks are close to those from Dargazin. Based on our results, the maximum depositional age of the detrital zircons indicates relatively consistent sedimentation throughout the late Ediacaran and the early Cambrian, ranging from 590 to 530 Ma. <i>Farnoosh Farjandi [</i>ffarjandi@swin.edu.au<i>]</i>, <i>Faculty of Science</i>, <i>Engineering and Technology</i>, <i>Swinburne University of Technology</i>, <i>Melbourne (Hawthorn)</i>, <i>Victoria 3122</i>, <i>Australia and Department of Geochemical Exploration</i>, <i>Geological Survey of Iran</i>, <i>Tehran</i>, <i>Iran; Patricia Vickers Rich [</i>prich@swin.edu.au<i>], Faculty of Science</i>, <i>Engineering and Technology</i>, <i>Swinburne University of Technology</i>, <i>Melbourne (Hawthorn)</i>, <i>Victoria 3122</i>, <i>Australia and School of Earth</i>, <i>Atmosphere and Environment</i>, <i>Monash University</i>, <i>Melbourne (Clayton)</i>, <i>Victoria 3800</i>, <i>Australia; Ulf Linnemann [</i>ulf.linnemann@senckenberg.de<i>] and Mandy Hofmann [</i>mandy.hofmann@senckenberg.de<i>]</i>, <i>Senckenberg Naturhistorische Sammlungen Dresden</i>, <i>Sektion Geochronologie</i>, <i>01109 Dresden</i>, <i>Germany; Massimo Raveggi [</i>massimo.raveggi@monash.edu<i>] and Michael Hall [</i>mike.hall@monash.edu<i>]</i>, <i>School of Earth</i>, <i>Atmosphere and Environment</i>, <i>Monash University</i>, <i>Melbourne (Clayton)</i>, <i>Victoria 3800</i>, <i>Australia; Thomas H. Rich</i> [trich@museum.vic.gov.au<i>]</i>, <i>Museum Victoria</i>, <i>Melbourne</i>, <i>Victoria</i>, <i>3000</i>, <i>Australia</i>