cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5134837.v1
title: Data Downloads for "Deep Annotation of Protein Function across Diverse Bacteria from Mutant Phenotypes"

description: These downloads include genome-wide fitness data for 32 bacteria (seven more than in the bioRxiv preprint). The easiest way to view the data is with the Fitness Browser (http://fit.genomics.lbl.gov) rather than with these downloads. These downloads include: an R image with all of the per-gene fitness values and analyses; metadata about the 32 bacteria; a gzipped tar file of genome sequences, protein sequences, and gene models; and a gzipped tar file of strain usage. See the README.txt file for more explanation.<br>
DOI: 10.6084/m9.figshare.16606802.v1
title: Dataset of endogenized phage genes in Fusobacterium nucleatum NCTC 10562

description: This work presents the set of endogenized phage genes in <i>Fusobacterium nucleatum </i>NCTC 10562. Original data for the dataset was derived from the annotated genome file of the microbe downloaded from GenBank, which was parsed and searched by an in-house MATLAB genome analysis software. The dataset comprises gene name, gene function, and gene sequence of each endogenized phage gene in the microbe. Overall, the data should serve as useful starter for initiating understanding of why particular phage genes remain endogenized in the host genome, and deciphering how evolutionary forces and host transposase has reshaped endogenized phage genes.
DOI: 10.6084/m9.figshare.16606802
title: Dataset of endogenized phage genes in Fusobacterium nucleatum NCTC 10562

description: This work presents the set of endogenized phage genes in <i>Fusobacterium nucleatum </i>NCTC 10562. Original data for the dataset was derived from the annotated genome file of the microbe downloaded from GenBank, which was parsed and searched by an in-house MATLAB genome analysis software. The dataset comprises gene name, gene function, and gene sequence of each endogenized phage gene in the microbe. Overall, the data should serve as useful starter for initiating understanding of why particular phage genes remain endogenized in the host genome, and deciphering how evolutionary forces and host transposase has reshaped endogenized phage genes.
DOI: 10.5281/zenodo.5500753
title: CoVaxxy Tweet IDs data set

description: A collection of Tweet IDs related to Covid-19 Vaccines, gathered from Twitter since Jan 4, 2021. Please see https://arxiv.org/abs/2101.07694 for more information.
DOI: 10.5281/zenodo.5500780
title: Análise bibliométrica sobre justiça social

description: A fim de compreender quais áreas vem incluindo a justiça social em suas discussões, foi realizada uma breve análise bibliométrica a partir de artigos disponibilizados na base de dados SciELO.
DOI: 10.5281/zenodo.5500779
title: Análise bibliométrica sobre justiça social

description: A fim de compreender quais áreas vem incluindo a justiça social em suas discussões, foi realizada uma breve análise bibliométrica a partir de artigos disponibilizados na base de dados SciELO.
DOI: 10.5281/zenodo.5500457
title: Electricity demand data and solar generation data from Plymouth. UK

description: This dataset was used in the Western Power Distribution Presumed Open Data competition in 2021. The data is provided under the Western Power Distribution Open Data Licence. There are five files: pv_train_set4.csv - contains solar panel data - an irradiance, power output and solar panel temperature for each half-hour from 3rd November 2017 through 2nd July 2020. weather_train_set4.csv - contains hourly reanalysis temperature and solar radiation at 6 weather stations near the solar panels (near Plymouth, UK). demand_train_set4.csv - contains half-hourly electricity demand data from a substation near Plymouth, UK, running from 3rd November 2017 through 2nd July 2020. pv_test_set4.csv - contains an extra week of data to pv_train_set4.csv, running from 3rd July 2020 through 9th July 2020. demand_test_set4.csv - contains an extra week of data to demand_train_set4.csv, running from 3rd July 2020 through 9th July 2020.
DOI: 10.5281/zenodo.5500456
title: Electricity demand data and solar generation data from Plymouth. UK

description: This dataset was used in the Western Power Distribution Presumed Open Data competition in 2021. The data is provided under the Western Power Distribution Open Data Licence. There are five files: pv_train_set4.csv - contains solar panel data - an irradiance, power output and solar panel temperature for each half-hour from 3rd November 2017 through 2nd July 2020. weather_train_set4.csv - contains hourly reanalysis temperature and solar radiation at 6 weather stations near the solar panels (near Plymouth, UK). demand_train_set4.csv - contains half-hourly electricity demand data from a substation near Plymouth, UK, running from 3rd November 2017 through 2nd July 2020. pv_test_set4.csv - contains an extra week of data to pv_train_set4.csv, running from 3rd July 2020 through 9th July 2020. demand_test_set4.csv - contains an extra week of data to demand_train_set4.csv, running from 3rd July 2020 through 9th July 2020.
DOI: 10.6084/m9.figshare.14602479.v3
title: Carabid - fungal associations

description: Literature-based associations between ground beetles (Coleoptera: Carabidae) and Fungi. Data are provided as an importable MySQL database, as well as .csv tables, both as separate tables and as one merged dataset.
DOI: 10.6084/m9.figshare.14602479
title: Carabid - fungal associations

description: Literature-based associations between ground beetles (Coleoptera: Carabidae) and Fungi. Data are provided as an importable MySQL database, as well as .csv tables, both as separate tables and as one merged dataset.
DOI: 10.6084/m9.figshare.14602479.v4
title: Carabid - fungal associations

description: Literature-based associations between ground beetles (Coleoptera: Carabidae) and Fungi. Data are provided as an importable MySQL database, as well as .csv tables, both as separate tables and as one merged dataset.
DOI: 10.18141/1503288
title: Newberry Geologic EarthVision Model

description: EarthVision 3D model of Newberry Volcano based upon geologic datasets.
DOI: 10.18141/1503290
title: Newberry Geophysical EarthVision Model

description: Newberry Volcano EarthVision model based upon geophysical data inputs.
DOI: 10.6084/m9.figshare.14748180
title: GoatSNP50 BeadChip data of Jiangxi goats

description: GoatSNP50 BeadChip data of Jiangxi goats
DOI: 10.6084/m9.figshare.14748180.v1
title: GoatSNP50 BeadChip data of Jiangxi goats

description: GoatSNP50 BeadChip data of Jiangxi goats
DOI: 10.6084/m9.figshare.12683321
title: Whole-genome SNP markers reveal conservation status, signatures of selection and introgression in Chinese Laiwu pigs

description: Laiwu pigs are a Chinese indigenous breed that is renowned for its exceptionally high intramuscular fat content (average greater than 6%), providing an excellent genetic resource for the genetic improvement of meat quality of modern commercial pigs. To uncover genetic diversity, population structure, signature of selection and potential exotic introgression in this breed, we sampled 238 Laiwu pigs from a state-supported conservation population and genotyped these individuals using GeneSeek 80K SNP BeadChip. We then conducted in-depth population genetics analyses for the Laiwu pig in a context of 1116 pigs from 42 Eurasian diverse breeds. First, we show that the current Laiwu population has more abundant genetic diversity than the population of 18 years ago likely due to gene flow from European commercial breeds. Both neighbor-joining (NJ) and principal component analyses indicate the introgression of European haplotypes into Laiwu pigs. The admixture analysis reveals that an average 26.66% of Laiwu genetic components are of European origin. Then, we assigned the tested individuals to different families according to their clustering patterns in the NJ tree, and proposed a family-based conservation strategy to reduce the risk of inbreeding depression in Laiwu pigs. Next, we explored three statistics (ROH and iHS and EigenGWAS) to identify a list of candidate genes for fat deposition, reproduction and growth in Laiwu pigs. Last, we detected a strong signature of introgression from European pigs into Laiwu pigs at the <i>GPC6</i> locus that regulates the growth of developing long bones. Further association analyses indicate that the introgressed <i>GPC6</i> haplotype contributed to the improvement of growth performance in Laiwu pigs. Altogether, this study not only benefits the better conservation of the Laiwu pig, but also advances our knowledge of the poorly understood effect of human-mediated introgression on phenotypic traits in Chinese indigenous pigs.
DOI: 10.6084/m9.figshare.12683321.v2
title: Whole-genome SNP markers reveal conservation status, signatures of selection and introgression in Chinese Laiwu pigs

description: Laiwu pigs are a Chinese indigenous breed that is renowned for its exceptionally high intramuscular fat content (average greater than 6%), providing an excellent genetic resource for the genetic improvement of meat quality of modern commercial pigs. To uncover genetic diversity, population structure, signature of selection and potential exotic introgression in this breed, we sampled 238 Laiwu pigs from a state-supported conservation population and genotyped these individuals using GeneSeek 80K SNP BeadChip. We then conducted in-depth population genetics analyses for the Laiwu pig in a context of 1116 pigs from 42 Eurasian diverse breeds. First, we show that the current Laiwu population has more abundant genetic diversity than the population of 18 years ago likely due to gene flow from European commercial breeds. Both neighbor-joining (NJ) and principal component analyses indicate the introgression of European haplotypes into Laiwu pigs. The admixture analysis reveals that an average 26.66% of Laiwu genetic components are of European origin. Then, we assigned the tested individuals to different families according to their clustering patterns in the NJ tree, and proposed a family-based conservation strategy to reduce the risk of inbreeding depression in Laiwu pigs. Next, we explored three statistics (ROH and iHS and EigenGWAS) to identify a list of candidate genes for fat deposition, reproduction and growth in Laiwu pigs. Last, we detected a strong signature of introgression from European pigs into Laiwu pigs at the <i>GPC6</i> locus that regulates the growth of developing long bones. Further association analyses indicate that the introgressed <i>GPC6</i> haplotype contributed to the improvement of growth performance in Laiwu pigs. Altogether, this study not only benefits the better conservation of the Laiwu pig, but also advances our knowledge of the poorly understood effect of human-mediated introgression on phenotypic traits in Chinese indigenous pigs.
DOI: 10.26188/14374379
title: Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain

description: Supplementary data to <b>Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain</b><b></b>
DOI: 10.26188/14374379.v6
title: Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain

description: Supplementary data to <b>Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain</b><b></b>
DOI: 10.26188/14374379.v5
title: Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain

description: Supplementary data to <b>Entry of antiepileptic drugs (valproate and lamotrigine) into the developing rat brain</b><b></b>
DOI: 10.6084/m9.figshare.16606905.v1
title: Additional file 1 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.16606905
title: Additional file 1 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.16606908.v1
title: Additional file 2 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 2: Table S2.
DOI: 10.6084/m9.figshare.16606908
title: Additional file 2 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 2: Table S2.
DOI: 10.6084/m9.figshare.16606911.v1
title: Additional file 3 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.16606911
title: Additional file 3 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 3: Table S3.
DOI: 10.6084/m9.figshare.16606914.v1
title: Additional file 4 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 4: Table S4.
DOI: 10.6084/m9.figshare.16606914
title: Additional file 4 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 4: Table S4.
DOI: 10.6084/m9.figshare.16606917
title: Additional file 5 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 5: Table S5.
DOI: 10.6084/m9.figshare.16606920
title: Additional file 6 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 6: Table S6.
DOI: 10.6084/m9.figshare.16606917.v1
title: Additional file 5 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 5: Table S5.
DOI: 10.6084/m9.figshare.16606920.v1
title: Additional file 6 of Paternal childcare in early childhood and problematic behavior in children: a population-based prospective study in Japan

description: Additional file 6: Table S6.
DOI: 10.6084/m9.figshare.16606922
title: Additional file 1 of Multi-intervention integrated deworming strategy for sustained control of soil-transmitted helminths infections: a case study in Jiangsu Province, China

description: Additional file 1. Data involved in this study.
DOI: 10.6084/m9.figshare.16606922.v1
title: Additional file 1 of Multi-intervention integrated deworming strategy for sustained control of soil-transmitted helminths infections: a case study in Jiangsu Province, China

description: Additional file 1. Data involved in this study.
DOI: 10.6084/m9.figshare.16606934
title: Additional file 1 of Longitudinal measurement invariance in urbanization index of Chinese communities across 2000 and 2015: a Bayesian approximate measurement invariance approach

description: Additional file 1.
DOI: 10.6084/m9.figshare.16606934.v1
title: Additional file 1 of Longitudinal measurement invariance in urbanization index of Chinese communities across 2000 and 2015: a Bayesian approximate measurement invariance approach

description: Additional file 1.
DOI: 10.6084/m9.figshare.16606973.v1
title: Additional file 1 of Analysis of contamination in cluster randomized trials of malaria interventions

description: Additional file 1 Analysis_CRT.R. R code for a sigmoid random effects model for the analysis of a CRT of malaria prevalence.
DOI: 10.6084/m9.figshare.16606973
title: Additional file 1 of Analysis of contamination in cluster randomized trials of malaria interventions

description: Additional file 1 Analysis_CRT.R. R code for a sigmoid random effects model for the analysis of a CRT of malaria prevalence.
DOI: 10.6084/m9.figshare.16606976
title: Additional file 2 of Analysis of contamination in cluster randomized trials of malaria interventions

description: Additional file 2 simulated_trial.RData. Simulated data file for the R code in Analysis_CRT.R.
DOI: 10.6084/m9.figshare.16606976.v1
title: Additional file 2 of Analysis of contamination in cluster randomized trials of malaria interventions

description: Additional file 2 simulated_trial.RData. Simulated data file for the R code in Analysis_CRT.R.
DOI: 10.6084/m9.figshare.16607039
title: Additional file 1 of Prenatal risk factors and neonatal DNA methylation in very preterm infants

description: Additional file 1. EWAS results for all suggestive associations (FDR &lt; 10%). This Excel spreadsheet contains information about all CpGs with FDR &lt; 10% from the models comparing physical risk to typical (Model 1), psychological risk to typical (Model 2), and cumulative risk (Model 3).
DOI: 10.6084/m9.figshare.16607039.v1
title: Additional file 1 of Prenatal risk factors and neonatal DNA methylation in very preterm infants

description: Additional file 1. EWAS results for all suggestive associations (FDR &lt; 10%). This Excel spreadsheet contains information about all CpGs with FDR &lt; 10% from the models comparing physical risk to typical (Model 1), psychological risk to typical (Model 2), and cumulative risk (Model 3).
DOI: 10.6084/m9.figshare.16607051
title: Additional file 1 of Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions

description: Additional file 1.
DOI: 10.6084/m9.figshare.16607051.v1
title: Additional file 1 of Genome-resolved metagenome and metatranscriptome analyses of thermophilic composting reveal key bacterial players and their metabolic interactions

description: Additional file 1.
DOI: 10.6084/m9.figshare.13710950
title: Additional file 12 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 12: Table S6. Results of univariate analyses: determination coefficients (R2) estimated from univariate regressions between genetic and environmental distances. [C] indicates that the considered environmental raster was treated as a conductance factor for the computation of environmental distances with circuit theory. [R] indicates that the considered environmental raster was treated as a resistance factor for the computation of environmental distances with circuit theory. Q Difference between environmental multiple regression on distance matrices (MRDM) R2 and null raster MRDM R2. The results for K = 10 are not shown as they were non-significant.
DOI: 10.6084/m9.figshare.13710950.v1
title: Additional file 12 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 12: Table S6. Results of univariate analyses: determination coefficients (R2) estimated from univariate regressions between genetic and environmental distances. [C] indicates that the considered environmental raster was treated as a conductance factor for the computation of environmental distances with circuit theory. [R] indicates that the considered environmental raster was treated as a resistance factor for the computation of environmental distances with circuit theory. Q Difference between environmental multiple regression on distance matrices (MRDM) R2 and null raster MRDM R2. The results for K = 10 are not shown as they were non-significant.
DOI: 10.6084/m9.figshare.13710956
title: Additional file 1 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 1: Table S1. Sampling sites and associated genetic diversity. n Sample size, Ho observed heterozygosity, Hs expected heterozygosity, FIS fixation index.
DOI: 10.6084/m9.figshare.13710956.v1
title: Additional file 1 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 1: Table S1. Sampling sites and associated genetic diversity. n Sample size, Ho observed heterozygosity, Hs expected heterozygosity, FIS fixation index.
DOI: 10.6084/m9.figshare.13710959
title: Additional file 2 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 2: Table S2. Reference sequences used for specific assignation.
DOI: 10.6084/m9.figshare.13710962
title: Additional file 3 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 3: Table S3. Origin and numbers of individuals used to build up the DNA library necessary for the development of the microsatellite markers.
DOI: 10.6084/m9.figshare.13710959.v1
title: Additional file 2 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 2: Table S2. Reference sequences used for specific assignation.
DOI: 10.6084/m9.figshare.13710962.v1
title: Additional file 3 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 3: Table S3. Origin and numbers of individuals used to build up the DNA library necessary for the development of the microsatellite markers.
DOI: 10.6084/m9.figshare.13710965
title: Additional file 4 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 4: Table S4. Primers of the 13 microsatellite markers used to genotype C. obsoletus populations. DYE Fluorochrome, TFm half denaturation temperature in degrees, bp base pairs.
DOI: 10.6084/m9.figshare.13710965.v1
title: Additional file 4 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 4: Table S4. Primers of the 13 microsatellite markers used to genotype C. obsoletus populations. DYE Fluorochrome, TFm half denaturation temperature in degrees, bp base pairs.
DOI: 10.6084/m9.figshare.13710977
title: Additional file 8 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 8: Table S5. Genetic diversity by locus. Ho Observed heterozygosity, Hs expected heterozygosity, FIS fixation index, SAD short alleles dominance.
DOI: 10.6084/m9.figshare.13710977.v1
title: Additional file 8 of High dispersal capacity of Culicoides obsoletus (Diptera: Ceratopogonidae), vector of bluetongue and Schmallenberg viruses, revealed by landscape genetic analyses

description: Additional file 8: Table S5. Genetic diversity by locus. Ho Observed heterozygosity, Hs expected heterozygosity, FIS fixation index, SAD short alleles dominance.
DOI: 10.6084/m9.figshare.16607073
title: Additional file 1 of Ontogeny of audible squeaks in yellow steppe lemming Eolagurus luteus: trend towards shorter and low-frequency calls is reminiscent of those in ultrasonic vocalization

description: Additional file 1: Table S1. Mean values for acoustic variables of AUD calls, body weight, body length, head length, foot length, tail length and body size index for 120 individual pup and adult yellow steppe lemmings.