cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7752991
title: StentValid

description: StentValid: the database contains intravascular ultrasound based geometrical information on human coronary lumen and wall, immediately after stent placement and at 6 month follow-up. All ethical documentation was obtained and is available upon request.
DOI: 10.6084/m9.figshare.22308949
title: pBI143 Version 1 across healthy gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healty individuals using the pBI143 version 1 (which was reconstructed from a metagenome that were labeled as USA0006, hence the file names). <br> Learn more about this dataset and the study here: <br> https://merenlab.org/data/pBI143
DOI: 10.6084/m9.figshare.22308964
title: pBI143 Version 2 across healthy gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healty individuals using the pBI143 version 2 (which was reconstructed from a metagenome that were labeled as CHI0054, hence the file names).
DOI: 10.6084/m9.figshare.22308964.v1
title: pBI143 Version 2 across healthy gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healty individuals using the pBI143 version 2 (which was reconstructed from a metagenome that were labeled as CHI0054, hence the file names).
DOI: 10.6084/m9.figshare.22308967
title: pBI143 Version 3 across healthy gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healty individuals using the pBI143 version 3 (which was reconstructed from a metagenome that were labeled as ISR0084, hence the file names).
DOI: 10.6084/m9.figshare.22308991
title: pBI143 Version 1 across IBD gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 1,419 gut metagenomes from individuals who were diagnosed with IBD using the pBI143 version 1 (which was reconstructed from a metagenome that were labeled as USA0006, hence the file names).
DOI: 10.6084/m9.figshare.22308991.v1
title: pBI143 Version 1 across IBD gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 1,419 gut metagenomes from individuals who were diagnosed with IBD using the pBI143 version 1 (which was reconstructed from a metagenome that were labeled as USA0006, hence the file names).
DOI: 10.6084/m9.figshare.22309003
title: pBI143 Version 2 across IBD gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 1,419 gut metagenomes from individuals who were diagnosed with IBD using the pBI143 version 2 (which was reconstructed from a metagenome that were labeled as CHI0054, hence the file names).
DOI: 10.6084/m9.figshare.22309006
title: pBI143 Version 3 across IBD gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 1,419 gut metagenomes from individuals who were diagnosed with IBD using the pBI143 version 3 (which was reconstructed from a metagenome that were labeled as ISR0084, hence the file names).
DOI: 10.6084/m9.figshare.22309006.v1
title: pBI143 Version 3 across IBD gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 1,419 gut metagenomes from individuals who were diagnosed with IBD using the pBI143 version 3 (which was reconstructed from a metagenome that were labeled as ISR0084, hence the file names).
DOI: 10.6084/m9.figshare.22309015
title: Anvi'o single-copy core gene taxonomy for healthy gut metagenomes

description: Each file in this data pack is the output of the program `anvi-estimate-scg-taxonomy`, for a given ribosomal protein, with the `--long-format` and `--metagenome-mode` flags run on 3,036 gut metagenomes generated from healthy individuals across the globe. <br> Learn more about the `anvi-estimate-scg-taxonomy` here: <br> https://anvio.org/m/anvi-estimate-scg-taxonomy
DOI: 10.26165/juelich-data/seccu6
title: Experimental data for: Adsorption of Ba and 226Ra on illite: a comparative experimental and modelling study

description: The adsorption of Ba and 226Ra on Na-illite (Illite du Puy, IdP) was studied in single element experiments as a function of pH and ionic strength. In addition, 137Ba/133Ba isotherms at different pH values were measured and the adsorption of trace 226Ra was quantified as a function of increasing Ba concentrations. This dataset contains experimental data on pH-edges and isotherms.
DOI: 10.6084/m9.figshare.22309033
title: Anvi'o single-copy core gene taxonomy for IBD gut metagenomes

description: Each file in this folder is the output of the program `anvi-estimate-scg-taxonomy`, for a given ribosomal protein, with the `--long-format` and `--metagenome-mode` flags run on 1419 gut metagenomes generated from individuals who were diagnosed with IBD. <br> Learn more about the `anvi-estimate-scg-taxonomy` here: <br> https://anvio.org/m/anvi-estimate-scg-taxonomy
DOI: 10.6084/m9.figshare.22309105
title: pBI143 across non-human environmental metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 936 non-human gut metagenomes using the pBI143 version 1 (which was reconstructed from a metagenome that were labeled as USA0006, hence the file names). <br> If you look at the anvi-db-info output for the profile-db, you will see that there are only 435 samples present in the database rather than 936. The reason to that is becauase the samples in which pBI143 did not recruit even a single read are not included in downstream analyses. The list of original sample names used for the analysis include Tara Ocean and Ocean Sampling Day Project open and coastal marine metagenomes, human oral and skin metagenomes from the Human Microbiota Project, primate gut metagenomes, dog metagenomes, and sewage metagenomes around the globe, and their accession numbers are available via the Supplementary Table 1 (alternative_environment tab) of the Fogarty et al 2023 study.
DOI: 10.6084/m9.figshare.22309105.v1
title: pBI143 across non-human environmental metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 936 non-human gut metagenomes using the pBI143 version 1 (which was reconstructed from a metagenome that were labeled as USA0006, hence the file names). <br> If you look at the anvi-db-info output for the profile-db, you will see that there are only 435 samples present in the database rather than 936. The reason to that is becauase the samples in which pBI143 did not recruit even a single read are not included in downstream analyses. The list of original sample names used for the analysis include Tara Ocean and Ocean Sampling Day Project open and coastal marine metagenomes, human oral and skin metagenomes from the Human Microbiota Project, primate gut metagenomes, dog metagenomes, and sewage metagenomes around the globe, and their accession numbers are available via the Supplementary Table 1 (alternative_environment tab) of the Fogarty et al 2023 study.
DOI: 10.6084/m9.figshare.22309114
title: crAssphage across healthy gut metagenomes

description: The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healthy individuals using the crAssphage genome.
DOI: 10.6084/m9.figshare.22309186
title: S1_Table.csv

description: <strong>The sample information of the maize RNA-seq was obtained from NCBI and ENA.</strong>
DOI: 10.6084/m9.figshare.22309186.v1
title: S1_Table.csv

description: <strong>The sample information of the maize RNA-seq was obtained from NCBI and ENA.</strong>
DOI: 10.6084/m9.figshare.22309180
title: S2_Table.csv

description: <strong>The simplified maize expression matrix. </strong>
DOI: 10.6084/m9.figshare.22309180.v1
title: S2_Table.csv

description: <strong>The simplified maize expression matrix. </strong>
DOI: 10.6084/m9.figshare.22309189
title: S7_Table.csv

description: The SHAP values between all samples and tissues.
DOI: 10.6084/m9.figshare.22309189.v1
title: S7_Table.csv

description: The SHAP values between all samples and tissues.
DOI: 10.5281/zenodo.7755561
title: MH-Ranjbar/L_O_letters_2023: v1.0.1

description: The dataset used in Ranjbar et al. (2023)
DOI: 10.5281/zenodo.7755562
title: MH-Ranjbar/L_O_letters_2023: v1.0.1

description: The dataset used in Ranjbar et al. (2023)
DOI: 10.5281/zenodo.7753445
title: Surface acoustic wave resonators on thin film piezoelectric substrates in the quantum regime - data archive

description: The Archive contains all raw and processed (fitted) data that is used in the manuscript "surface acoustic wave resonators on thin film piezoelectric substrates in the quantum regime" submitted to IOP Materials for quantum technology.
description: Additional funding received by the Deutsche Forschungsgemeinschaft (DPG) under Germany's Excellence Strategy EXC-2111-390814868.
DOI: 10.5281/zenodo.7753444
title: Surface acoustic wave resonators on thin film piezoelectric substrates in the quantum regime - data archive

description: The Archive contains all raw and processed (fitted) data that is used in the manuscript "surface acoustic wave resonators on thin film piezoelectric substrates in the quantum regime" submitted to IOP Materials for quantum technology.
description: Additional funding received by the Deutsche Forschungsgemeinschaft (DPG) under Germany's Excellence Strategy EXC-2111-390814868.
DOI: 10.6084/m9.figshare.19355059.v1
title: Small mammals of the Holocene sequence of Postes Cave (SW Spain): biogeographic and palaeoenvironmental implications for southwestern Iberia

description: Postes Cave in SW Spain (Extremadura) displays a Holocene archaeostratigraphic sequence radiocarbon-dated to between <i>c</i>. 8.5–4 cal kyr BP (Mesolithic-Chalcolithic). The sediments collected at two areas within the cave yielded small mammal remains belonging to eleven species of rodents, ‘insectivores’, lagomorphs and chiropterans. This small mammal fossil assemblage is one of the few known to date in the southwest of the Iberian Peninsula. Preliminary taphonomic analysis and previously published data suggest that the remains were accumulated by the predatory activity of Eurasian eagle owls and small to medium-sized carnivores such as red foxes. The palaeoenvironmental and palaeoclimatic reconstructions performed show stable conditions with slight variations during its time span, suggesting an initial scenario of open forested habitats during the Mesolithic and Neolithic which progressively decreased in favour of more open habitats during the Chalcolithic coinciding with human-induced changes of the landscape and with the aridification trend of this period. The presence of <i>Microtus cabrerae</i> and <i>Crocidura suaveolens</i> in the assemblage is noteworthy since they are now extinct in this region. The plausible causes and the processes of these extirpations are discussed.
DOI: 10.6084/m9.figshare.19388386
title: Preliminarily report on rare earth element taphonomy of a Miocene mixed age fossil vertebrate assemblage (Pécs-Danitzpuszta, Mecsek Mts., Hungary): uptake mechanism and possible separation of palaeocommunities

description: The sand pit of Pécs-Danitzpuszta is one of the most important mixed Neogene vertebrate localities in Hungary, with older Miocene (Langhian – Serravallian) terrestrial and marine animal remains re-deposited into the upper Miocene (Tortonian) Lake Pannon sediments. Due to the mixed status of the Pécs-Danitzpuszta vertebrate assemblages, limited information is available about the former depositional environment and age of these fossils. However, the rare earth element (REE) composition of the fossil apatite can help to determine the stratigraphic origin and the early depositional environments of unprovenanced vertebrate remains. In this study, the REE composition of more than 60 vertebrate fossils, among them reworked and <i>in situ</i> remains from the Mecsek Mountain, were analysed. The results allowed separation between the Badenian, Sarmatian, and Pannonian aged fossils. The REE content and their distribution also helped us characterise the ancient depositional conditions of the investigated reworked fossils. Furthermore, several different types of vertebrate fossils were analysed, resulting in a large database that helped clarify the likely timings and mechanisms of REE uptake at this locality. Apparent variation in REE chemistry within bones (cortical vs cancellous) and teeth (enamel vs dentine) are best linked to fractionation along the REE series during their incorporation.
DOI: 10.6084/m9.figshare.19388386.v1
title: Preliminarily report on rare earth element taphonomy of a Miocene mixed age fossil vertebrate assemblage (Pécs-Danitzpuszta, Mecsek Mts., Hungary): uptake mechanism and possible separation of palaeocommunities

description: The sand pit of Pécs-Danitzpuszta is one of the most important mixed Neogene vertebrate localities in Hungary, with older Miocene (Langhian – Serravallian) terrestrial and marine animal remains re-deposited into the upper Miocene (Tortonian) Lake Pannon sediments. Due to the mixed status of the Pécs-Danitzpuszta vertebrate assemblages, limited information is available about the former depositional environment and age of these fossils. However, the rare earth element (REE) composition of the fossil apatite can help to determine the stratigraphic origin and the early depositional environments of unprovenanced vertebrate remains. In this study, the REE composition of more than 60 vertebrate fossils, among them reworked and <i>in situ</i> remains from the Mecsek Mountain, were analysed. The results allowed separation between the Badenian, Sarmatian, and Pannonian aged fossils. The REE content and their distribution also helped us characterise the ancient depositional conditions of the investigated reworked fossils. Furthermore, several different types of vertebrate fossils were analysed, resulting in a large database that helped clarify the likely timings and mechanisms of REE uptake at this locality. Apparent variation in REE chemistry within bones (cortical vs cancellous) and teeth (enamel vs dentine) are best linked to fractionation along the REE series during their incorporation.
DOI: 10.6084/m9.figshare.19355059
title: Small mammals of the Holocene sequence of Postes Cave (SW Spain): biogeographic and palaeoenvironmental implications for southwestern Iberia

description: Postes Cave in SW Spain (Extremadura) displays a Holocene archaeostratigraphic sequence radiocarbon-dated to between <i>c</i>. 8.5–4 cal kyr BP (Mesolithic-Chalcolithic). The sediments collected at two areas within the cave yielded small mammal remains belonging to eleven species of rodents, ‘insectivores’, lagomorphs and chiropterans. This small mammal fossil assemblage is one of the few known to date in the southwest of the Iberian Peninsula. Preliminary taphonomic analysis and previously published data suggest that the remains were accumulated by the predatory activity of Eurasian eagle owls and small to medium-sized carnivores such as red foxes. The palaeoenvironmental and palaeoclimatic reconstructions performed show stable conditions with slight variations during its time span, suggesting an initial scenario of open forested habitats during the Mesolithic and Neolithic which progressively decreased in favour of more open habitats during the Chalcolithic coinciding with human-induced changes of the landscape and with the aridification trend of this period. The presence of <i>Microtus cabrerae</i> and <i>Crocidura suaveolens</i> in the assemblage is noteworthy since they are now extinct in this region. The plausible causes and the processes of these extirpations are discussed.
DOI: 10.6084/m9.figshare.19493647
title: Plasticity in the morphology of the fused frontals of Albanerpetontidae (Lissamphibia; Allocaudata)

description: Albanerpetontidae form an enigmatic extinct group of lissamphibians, ranging from the early Bathonian to the early Pleistocene. The Upper Jurassic outcrops of Portugal yield a large collection of material, suitable for addressing the intraspecific variation in and diagnostic potential of the characteristic fused frontals. We revise 58 specimens from the Guimarota beds of the Kimmeridgian Alcobaça Formation and describe 62 new frontal bones from the Kimmeridgian – Tithonian Lourinhã Formation. Smaller specimens exhibit a vermicular dorsal ornamentation, while it is polygonal in larger specimens and other albanerpetontids. Compared to small specimens, larger specimens display: (1) larger ventrolateral crests extending posteriorly after the parietal margin; (2) a relatively shorter internasal process; (3) a frontal width across posterior edges relatively smaller; and (4) a ventromedian crest less pronounced. Morphometric analyses suggest a single species with different ontogenetic stages. Specimens are attributed to aff. <i>Celtedens</i> sp., based on a bell-shaped outline with a curved orbital margin (although variable in Portuguese specimens), and a flabellate, bulbous-shaped internasal process. The species is more similar to <i>C. megacephalus</i> than <i>C. ibericus</i>, but its phylogenetic position comprises an unresolved trichotomy. Our results show that intraspecific variation and homoplasy render the fused frontal non-diagnostic below the generic level.
DOI: 10.6084/m9.figshare.19493647.v1
title: Plasticity in the morphology of the fused frontals of Albanerpetontidae (Lissamphibia; Allocaudata)

description: Albanerpetontidae form an enigmatic extinct group of lissamphibians, ranging from the early Bathonian to the early Pleistocene. The Upper Jurassic outcrops of Portugal yield a large collection of material, suitable for addressing the intraspecific variation in and diagnostic potential of the characteristic fused frontals. We revise 58 specimens from the Guimarota beds of the Kimmeridgian Alcobaça Formation and describe 62 new frontal bones from the Kimmeridgian – Tithonian Lourinhã Formation. Smaller specimens exhibit a vermicular dorsal ornamentation, while it is polygonal in larger specimens and other albanerpetontids. Compared to small specimens, larger specimens display: (1) larger ventrolateral crests extending posteriorly after the parietal margin; (2) a relatively shorter internasal process; (3) a frontal width across posterior edges relatively smaller; and (4) a ventromedian crest less pronounced. Morphometric analyses suggest a single species with different ontogenetic stages. Specimens are attributed to aff. <i>Celtedens</i> sp., based on a bell-shaped outline with a curved orbital margin (although variable in Portuguese specimens), and a flabellate, bulbous-shaped internasal process. The species is more similar to <i>C. megacephalus</i> than <i>C. ibericus</i>, but its phylogenetic position comprises an unresolved trichotomy. Our results show that intraspecific variation and homoplasy render the fused frontal non-diagnostic below the generic level.
DOI: 10.20351/29he20230214
title: POLAR-CHANGE Cruise, RV Hespérides

description: Oceanographic data acquired during the POLAR-CHANGE Cruise (29HE20230214) on board the Research Vessel Hespérides in 2023.
DOI: 10.5281/zenodo.7755560
title: Spring temperature drives phenotypic selection on plasticity of flowering time

description: Data on field observations of flowering time and fitness of the perennial forest herb <em>Lathyrus vernus</em> and on spring temperature from weather station data. The dataset includes 22 years of data (1987–1996 and 2006–2017) from a <em>L. vernus</em> population located in a deciduous forest in Tullgarn, SE Sweden (58.9496 N, 17.6097 E). It includes records from 837 individuals (607 from 1987 to 1996, and 230 from 2006 to 2017), and from 2478 flowering events. The dataset includes the following variables: year: year of the recording id_nr: numeric plant id id: unique plant id (combination of numeric plant id and period) fcode: flowering code (1 if the plant flowered on that year, 0 if not) FFD: First Flowering Date n_fl: number of flowers n_fr: number of fruits totseed: total number of seeds intactseed: total number of intact seeds (not damaged by seed predator beetles) shoot_vol: shoot volume period: old (1987–1996) or new (2006–2017) n_years_fl_fitness: number of years when data on flowering and fitness is available n_years_study: number of years when the plant was included in the study mean_4: Average daily mean temperature of April (calculated from nearby meteorological station data) cmean_4: Mean-centred average daily mean temperature of April
DOI: 10.5281/zenodo.7755559
title: Spring temperature drives phenotypic selection on plasticity of flowering time

description: Data on field observations of flowering time and fitness of the perennial forest herb <em>Lathyrus vernus</em> and on spring temperature from weather station data. The dataset includes 22 years of data (1987–1996 and 2006–2017) from a <em>L. vernus</em> population located in a deciduous forest in Tullgarn, SE Sweden (58.9496 N, 17.6097 E). It includes records from 837 individuals (607 from 1987 to 1996, and 230 from 2006 to 2017), and from 2478 flowering events. The dataset includes the following variables: year: year of the recording id_nr: numeric plant id id: unique plant id (combination of numeric plant id and period) fcode: flowering code (1 if the plant flowered on that year, 0 if not) FFD: First Flowering Date n_fl: number of flowers n_fr: number of fruits totseed: total number of seeds intactseed: total number of intact seeds (not damaged by seed predator beetles) shoot_vol: shoot volume period: old (1987–1996) or new (2006–2017) n_years_fl_fitness: number of years when data on flowering and fitness is available n_years_study: number of years when the plant was included in the study mean_4: Average daily mean temperature of April (calculated from nearby meteorological station data) cmean_4: Mean-centred average daily mean temperature of April
DOI: 10.6084/m9.figshare.22309219
title: Global and regional scenario data.xlsx

description: Comparable global and regional data for climate mitigation pathways under 2 and 1.5 degrees extracted from IPCC AR6 database.
DOI: 10.6084/m9.figshare.22309219.v1
title: Global and regional scenario data.xlsx

description: Comparable global and regional data for climate mitigation pathways under 2 and 1.5 degrees extracted from IPCC AR6 database.
DOI: 10.5282/ubm/data.169
title: Blame Attributions by EU Member States and EU Institutions for Contested Migration Policies

description: Supplementary material for the article "Multi-level Blame Games: Blame-shifting in the EU" (Tim Heinkelmann-Wild and Bernhard Zangl) accepted for publication by Governance at October 7, 2019.