cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30845001.v1
title: Additional file 9 of Intra-strain genetic heterogeneity in Toxoplasma gondii ME49: Oxford Nanopore long-read sequencing reveals copy number variation in the ROP8-ROP2A locus

description: Supplementary Material 9.
DOI: 10.6084/m9.figshare.30845038.v1
title: Additional file 14 of Plexin C1 modulates metabolic programming for resolution of severe inflammation

description: Supplementary Material 14; Supplementary Dataset 1.
DOI: 10.6084/m9.figshare.30844881.v1
title: Additional file 1 of Bidirectional causal relationship between inflammatory cytokines and endometriosis at different sites

description: Supplementary Material 1.
DOI: 10.6084/m9.figshare.30844983
title: Additional file 4 of Intra-strain genetic heterogeneity in Toxoplasma gondii ME49: Oxford Nanopore long-read sequencing reveals copy number variation in the ROP8-ROP2A locus

description: Supplementary Material 4.
DOI: 10.6084/m9.figshare.30844986
title: Additional file 5 of Intra-strain genetic heterogeneity in Toxoplasma gondii ME49: Oxford Nanopore long-read sequencing reveals copy number variation in the ROP8-ROP2A locus

description: Supplementary Material 5.
DOI: 10.6084/m9.figshare.30844884
title: Additional file 2 of Bidirectional causal relationship between inflammatory cytokines and endometriosis at different sites

description: Supplementary Material 2.
DOI: 10.6084/m9.figshare.30844920
title: Additional file 1 of Comparing wMAS, GWAS, and genomic prediction for selecting powdery mildew-resistant spring barley genotypes

description: Supplementary Material 1.
DOI: 10.15468/dl.9r5sxp
title: Occurrence Download

description: A dataset containing 1522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Haplonycteris fischeri",
 "Year 1000-2025"
 ]
}

 The dataset includes 1522 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043506-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14083843
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.b9z835
title: Occurrence Download

description: A dataset containing 1223214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-2.676568 42.69449, -2.657682 42.69754, -2.502242 42.77846, -2.380145 42.90417, -2.303787 43.0619, -2.280919 43.23564, -2.28145 43.25387, -2.312237 43.41996, -2.391974 43.56886, -2.49167 43.6657, -2.518226 43.71517, -2.639364 43.83266, -2.790422 43.90789, -2.957178 43.93378, -3.042364 43.93378, -3.215611 43.90578, -3.371218 43.82463, -3.493345 43.6986, -3.505416 43.67356, -3.516564 43.66206, -3.528634 43.63701, -3.53977 43.62552, -3.615955 43.46737, -3.638433 43.29328, -3.638142 43.28416, -3.607001 43.11844, -3.52712 42.96995, -3.406006 42.85264, -3.287586 42.79372, -3.282705 42.78898, -3.276489 42.78589, -3.270302 42.77989, -3.226716 42.75817, -3.220982 42.75261, -3.069869 42.67731, -2.903034 42.6514, -2.878741 42.6514, -2.705689 42.67933, -2.676568 42.69449), (-3.042364 43.38378, -2.957178 43.38378, -2.956899 43.37465, -2.969067 43.37465, -2.981236 43.37465, -2.980954 43.36553, -2.993121 43.36553, -2.992557 43.34728, -2.980392 43.34728, -2.980111 43.33816, -2.955784 43.33816, -2.954949 43.3108, -2.942788 43.3108, -2.942512 43.30168, -2.930352 43.30168, -2.929801 43.28344, -2.917644 43.28344, -2.91737 43.27432, -2.905214 43.27432, -2.904941 43.26521, -2.892787 43.26521, -2.892515 43.25609, -2.880362 43.25609, -2.880091 43.24697, -2.867939 43.24697, -2.86767 43.23786, -2.831216 43.23786, -2.830685 43.21962, -2.842834 43.21962, -2.867132 43.21962, -2.866863 43.21051, -2.879011 43.21051, -2.878741 43.2014, -2.903034 43.2014, -2.903306 43.21051, -2.891159 43.21051, -2.891701 43.22874, -2.903851 43.22874, -2.904123 43.23786, -2.940577 43.23786, -2.940301 43.22874, -2.952451 43.22874, -2.952728 43.23786, -2.964879 43.23786, -2.965157 43.24697, -2.97731 43.24697, -2.977869 43.26521, -2.990023 43.26521, -2.990304 43.27432, -3.00246 43.27432, -3.002742 43.28344, -3.014899 43.28344, -3.015183 43.29256, -3.027341 43.29256, -3.027625 43.30168, -3.088421 43.30168, -3.088712 43.3108, -3.076552 43.3108, -3.076841 43.31992, -3.06468 43.31992, -3.065546 43.34728, -3.053381 43.34728, -3.053669 43.35641, -3.041503 43.35641, -3.042364 43.38378))",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1223214 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043459-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mdja6h
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kinbergonuphis dorsalis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 30 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043509-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3shv53
title: Occurrence Download

description: A dataset containing 2897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-107.234276 37.152501, -107.279307 37.203294, -107.345518 37.203294, -107.300459 37.152501, -107.234276 37.152501))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2897 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043508-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5g8jr6
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinanthus globifer",
 "Continent is Africa"
 ]
}

 The dataset includes 337 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043510-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30845096
title: Asthma visits from clinics and the related environmental data

description: This study used data from the Sentinel Plus clinic-based enhanced sentinel surveillance system in Taiwan to examine childhood asthma in relation to environmental exposures. Daily asthma visit counts based on ICD-10 codes (J45.2x–J45.998) were extracted for three age groups (0–6, 7–12, and 13–18 years). Data were collected from 111 clinics in Taipei and 78 clinics in Kaohsiung between 2019 and 2023. All data were aggregated and de-identified.Environmental exposure variables included daily air pollutants, meteorological factors, and surrounding greenness. Air pollution data were obtained from fixed monitoring stations and included PM10 (μg/m³), PM2.5 (μg/m³), SO2 (ppb), CO (ppm), O3 (ppb), and NO2 (ppb). Daily meteorological variables consisted of minimum, maximum, and mean temperature (°C), relative humidity (%), wind speed (m/s), precipitation (mm), and sunshine duration (hours). Greenness exposure was quantified using 30-m resolution Normalized Difference Vegetation Index (NDVI) derived from Landsat 8 satellite imagery via Google Earth Engine. These variables were used to evaluate the associations between childhood asthma occurrence, air pollution, weather conditions, and surrounding greenness in industrial and non-industrial urban settings.
DOI: 10.6084/m9.figshare.30845096.v1
title: Asthma visits from clinics and the related environmental data

description: This study used data from the Sentinel Plus clinic-based enhanced sentinel surveillance system in Taiwan to examine childhood asthma in relation to environmental exposures. Daily asthma visit counts based on ICD-10 codes (J45.2x–J45.998) were extracted for three age groups (0–6, 7–12, and 13–18 years). Data were collected from 111 clinics in Taipei and 78 clinics in Kaohsiung between 2019 and 2023. All data were aggregated and de-identified.Environmental exposure variables included daily air pollutants, meteorological factors, and surrounding greenness. Air pollution data were obtained from fixed monitoring stations and included PM10 (μg/m³), PM2.5 (μg/m³), SO2 (ppb), CO (ppm), O3 (ppb), and NO2 (ppb). Daily meteorological variables consisted of minimum, maximum, and mean temperature (°C), relative humidity (%), wind speed (m/s), precipitation (mm), and sunshine duration (hours). Greenness exposure was quantified using 30-m resolution Normalized Difference Vegetation Index (NDVI) derived from Landsat 8 satellite imagery via Google Earth Engine. These variables were used to evaluate the associations between childhood asthma occurrence, air pollution, weather conditions, and surrounding greenness in industrial and non-industrial urban settings.
DOI: 10.6084/m9.figshare.30844313
title: Mitochondrial genome characterization and comparative study in shallots (Allium cepa L. var. aggregatum)

description: The research was conducted for Mitochondrial genome characterization and a comparative study in shallots (Allium cepa L. var. aggregatum). Mitochondrial DNA was extracted from the shallot leaves of Bima and Sumenep cultivars. A Percoll-based differential density gradient technique was used to separate intact mitochondria from the leaves. In the MGI sequencing process, Bima and Sumenep yielded 101.234436 million paired-end reads in Bima and 101.792714 million in Sumenep, with a read length of 300 bp. The quality of raw data was assessed using FastQC. Trimmomatic v0.39 was used to filter low-quality data. The quality and quantity of the library samples were assessed using a TapeStation and a Qubit Fluorometer. The de novo assembly of the mitochondrial genome was conducted using high-quality data with a K-mer value. We used automatic coverage-cutoff settings to reduce the number of mismatches, short insertions, and deletions. To assess assembly quality, we used the Quality Assessment Tool (QUAST) and MUMmer. To find the position of the gene and assess its function, we annotated the assembled genome. Genome annotation was done using Plant Mitochondrial Genome Annotator (PMGA).
DOI: 10.6084/m9.figshare.30844313.v1
title: Mitochondrial genome characterization and comparative study in shallots (Allium cepa L. var. aggregatum)

description: The research was conducted for Mitochondrial genome characterization and a comparative study in shallots (Allium cepa L. var. aggregatum). Mitochondrial DNA was extracted from the shallot leaves of Bima and Sumenep cultivars. A Percoll-based differential density gradient technique was used to separate intact mitochondria from the leaves. In the MGI sequencing process, Bima and Sumenep yielded 101.234436 million paired-end reads in Bima and 101.792714 million in Sumenep, with a read length of 300 bp. The quality of raw data was assessed using FastQC. Trimmomatic v0.39 was used to filter low-quality data. The quality and quantity of the library samples were assessed using a TapeStation and a Qubit Fluorometer. The de novo assembly of the mitochondrial genome was conducted using high-quality data with a K-mer value. We used automatic coverage-cutoff settings to reduce the number of mismatches, short insertions, and deletions. To assess assembly quality, we used the Quality Assessment Tool (QUAST) and MUMmer. To find the position of the gene and assess its function, we annotated the assembled genome. Genome annotation was done using Plant Mitochondrial Genome Annotator (PMGA).
DOI: 10.15468/dl.ry9m9r
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kinbergonuphis notialis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043511-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.be66zy
title: Occurrence Download

description: A dataset containing 1913050 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is one of (Spizella pusilla)",
 "BasisOfRecord is one of (Human Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 1951",
 "Year is less than or equal to 2024",
 "Month is greater than or equal to April",
 "Month is less than or equal to July",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1913050 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043466-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3d8wbg
title: Occurrence Download

description: A dataset containing 1424 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-105.825023 37.155392, -105.859846 37.195199, -105.911731 37.195199, -105.876892 37.155392, -105.825023 37.155392))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2015",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1424 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043513-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30845060
title: Sequencing data of the recombinant pET-32a plasmid containing the EDIII gene of Tick-borne encephalitis virus (TBEV)

description: This dataset corresponds to the prokaryotic expression vector construction experiment of the envelope protein third domain (EDIII) from the WH2012 isolate of Tick-borne encephalitis virus (TBEV). EDIII is the major neutralizing epitope region of TBEV; the purpose of constructing its recombinant pET-32a plasmid is to provide a basis for the subsequent prokaryotic expression, purification, and antigenicity analysis of the EDIII protein, and the sequencing data is used to verify the sequence correctness of the recombinant plasmid.
DOI: 10.6084/m9.figshare.30845060.v1
title: Sequencing data of the recombinant pET-32a plasmid containing the EDIII gene of Tick-borne encephalitis virus (TBEV)

description: This dataset corresponds to the prokaryotic expression vector construction experiment of the envelope protein third domain (EDIII) from the WH2012 isolate of Tick-borne encephalitis virus (TBEV). EDIII is the major neutralizing epitope region of TBEV; the purpose of constructing its recombinant pET-32a plasmid is to provide a basis for the subsequent prokaryotic expression, purification, and antigenicity analysis of the EDIII protein, and the sequencing data is used to verify the sequence correctness of the recombinant plasmid.
DOI: 10.15468/dl.sr3r4v
title: Occurrence Download

description: A dataset containing 4075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera tigris tigris",
 "Year 1900-2025"
 ]
}

 The dataset includes 4075 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043516-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3azcs4
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((118.32444 28.31079,123.16579 28.31079,123.16579 32.12562,118.32444 32.12562,118.32444 28.31079))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Podocarpaceae"
 ]
}

 The dataset includes 83 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043514-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vxkr7
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tapinanthus ophiodes",
 "Continent is Africa"
 ]
}

 The dataset includes 79 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043515-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30049234.v3
title: Supplementary tables.xlsx

description: Spinel, a key mineral in mafic-ultramafic rocks, is highly sensitive to petrologic and geochemical processes. The oxygen isotopic composition of spinel provides valuable insights into diverse geological processes, for which accurate and precise in-situ analysis is a fundamental requirement. A major challenge for microanalytical techniques, such as secondary ion mass spectrometry (SIMS), is the scarcity of matrix-matched reference materials for correcting instrumental mass fractionation and monitoring analytical accuracy. Here, we report three new working reference materials for in-situ oxygen isotopic analysis: MadSP (Mg₀.₇₅Fe₀.₂₅Al₂O₄), a Madagascar spinel, TanzSP-1 and TanzSP-2, both of which are pure Mg spinels from Tanzania. SIMS analyses show that they have homogeneous oxygen isotopic compositions, with two-standard deviations of 0.37‰ (N = 105), 0.40‰ (N = 106), and 0.33‰ (N = 106), respectively. Conventional fluorination isotope ratio mass spectrometry (IRMS) yields δ¹⁸O<sub>VSMOW</sub> values of 11.94 ± 0.43‰ for MadSP (2SD, N = 5) , 23.40 ± 0.20‰ for TanzSP-1 (2SD, N = 4), and 13.29 ± 0.48‰ for TanzSP-2 (2SD, N = 6). Our results show that there are no significant matrix effects for magnesia-alumina spinels with Fe ranging from 0% to 25%.
DOI: 10.5281/zenodo.17875058
title: YURAK URISH CHASTOTASI VA NAFAS OLISH TEZLIGINING SINXRONLASHUVI

description: Kardiorespirator sinxronizatsiya (KRS) - bu yurak urish chastotasi (YUCh) va nafas olish tezligi (NOT) o'rtasidagi fiziologik o'zaro bog'liqlikni ifodalovchi murakkab hodisadir. Ushbu maqolada 2015-2025-yillar oralig'ida o'tkazilgan tadqiqotlar asosida kardiorespirator sinxronizatsiyaning gomeostazni saqlashdagi ahamiyati, uning mexanizmlari va klinik ahamiyati o'rganilgan. Tadqiqotlar shuni ko'rsatadiki, KRS nafasiy sinus aritmiyasi (RSA) orqali gaz almashinuvini optimallashtiradi, kardiyovaskular barqarorlikni ta'minlaydi va umumiy sog'liq holatiga ijobiy ta'sir ko'rsatadi [1]. Zamonaviy usullar, jumladan, spektral tahlil, fazaviy tahlil va nonlineer dinamik usullar KRSni baholashda qo'llanilmoqda. Ushbu maqola KRSning asabiy va gumoral mexanizmlarini, uning klinik ahamiyatini va potentsial terapevtik qo'llanilishlarini muhokama qiladi [2].
DOI: 10.5281/zenodo.17875059
title: YURAK URISH CHASTOTASI VA NAFAS OLISH TEZLIGINING SINXRONLASHUVI

description: Kardiorespirator sinxronizatsiya (KRS) - bu yurak urish chastotasi (YUCh) va nafas olish tezligi (NOT) o'rtasidagi fiziologik o'zaro bog'liqlikni ifodalovchi murakkab hodisadir. Ushbu maqolada 2015-2025-yillar oralig'ida o'tkazilgan tadqiqotlar asosida kardiorespirator sinxronizatsiyaning gomeostazni saqlashdagi ahamiyati, uning mexanizmlari va klinik ahamiyati o'rganilgan. Tadqiqotlar shuni ko'rsatadiki, KRS nafasiy sinus aritmiyasi (RSA) orqali gaz almashinuvini optimallashtiradi, kardiyovaskular barqarorlikni ta'minlaydi va umumiy sog'liq holatiga ijobiy ta'sir ko'rsatadi [1]. Zamonaviy usullar, jumladan, spektral tahlil, fazaviy tahlil va nonlineer dinamik usullar KRSni baholashda qo'llanilmoqda. Ushbu maqola KRSning asabiy va gumoral mexanizmlarini, uning klinik ahamiyatini va potentsial terapevtik qo'llanilishlarini muhokama qiladi [2].
DOI: 10.13026/wjx8-sx53
title: MedVH: Towards Systematic Evaluation of Hallucination for Large Vision Language Models in the Medical Context

description: Large Vision Language Models (LVLMs) have recently achieved superior
performance in various tasks on natural image and text data, which inspires a
large amount of studies for LVLMs fine-tuning and training. Despite their
advancements, there has been scant research on the robustness of these models
against hallucination when fine-tuned on smaller datasets. In this study, we
introduce a new benchmark dataset, the Medical Visual Hallucination evaluation
benchmark (MedVH), to evaluate the hallucination of domain-specific LVLMs.
MedVH comprises six tasks to evaluate hallucinations in LVLMs within the
medical context, which includes tasks for a comprehensive understanding of
textual and visual input, as well as long textual response generation.
DOI: 10.13026/0qtp-3d10
title: MedVH: Towards Systematic Evaluation of Hallucination for Large Vision Language Models in the Medical Context

description: Large Vision Language Models (LVLMs) have recently achieved superior
performance in various tasks on natural image and text data, which inspires a
large amount of studies for LVLMs fine-tuning and training. Despite their
advancements, there has been scant research on the robustness of these models
against hallucination when fine-tuned on smaller datasets. In this study, we
introduce a new benchmark dataset, the Medical Visual Hallucination evaluation
benchmark (MedVH), to evaluate the hallucination of domain-specific LVLMs.
MedVH comprises six tasks to evaluate hallucinations in LVLMs within the
medical context, which includes tasks for a comprehensive understanding of
textual and visual input, as well as long textual response generation.
DOI: 10.15468/dl.8a6jn9
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptoecia benthaliana",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 82 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043517-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6sdne
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "Geometry POLYGON((-79.68359 -6.11201,-79.67027 -6.11342,-79.65142 -6.11315,-79.65067 -6.11135,-79.65307 -6.07375,-79.67148 -6.07466,-79.70118 -6.07627,-79.69958 -6.09759,-79.69491 -6.11173,-79.68359 -6.11201))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043518-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.