cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12140988
title: Data set on "In vitro growth kinetics of mesenchymal stem cells in cytotoxicity tests using ultra-diluted Viscum album

description: <i>This dataset consists of three Excel.xlsx format spreadsheets. These are <b>Morphology and Quantification of MSC</b></i><i>, <b>Viability assays (MTT Colorimetric Assay and quantification of MSC)</b>.xlsx, <b>Apoptosis Cell Assay.xlsx.</b></i> <b><i> </i></b> <b><i><br></i></b><b>Dataset Morphology and Quantification of MSC.xlsx </b>shows data on<i> the</i><i> </i>impact of different VA concentrations on the D1D2 dynamization and the impact of its Diluent on MSC viability after 72 hours of <i>in vitro</i> culture, through cell quantification analysis. The number of cells was maintained after <i>in vitro</i> culturing for 72 hours regardless of the diluent concentration used when compared to the control group. Similar MSC morphological characteristics over 24, 48, and 72 hours of <i>in vitro</i> culture were observed between the control group and the group at 10µL/mL of VA. <b><i> </i></b>Data from the cell viability test were subjected to normality analysis using the Shapiro-Wilk test. They were then evaluated for differences between the experimental groups by the paired Wilcoxon test. Data were subjected to regression analysis (PROC REG) for the relevant polynomial regressions.<b><i></i></b> <b><i><br></i></b><b>Dataset of<i> Viability assays MTT Colorimetric Assay shows data on the</i></b><i> </i>MSC were cultured in 96-well plates containing 5x10<sup>-4</sup> cells/mL in 100µl of base MEDIUM at 37.5 °C, 5% CO<sub>2</sub>, for 24 hours for cell stabilization and adhesion. This procedure was performed in double, so half plates would be used for MTT assay and the other half for quantification. After this period, the <i>in vitro</i> culture base MEDIUM was replaced, and the evaluation factor, which contained the diluent and/or VA D1D2 at different concentrations, was added to each group. MSC from all experimental groups and one untreated group (Control) were cultured for a further 48 hours. The results of the MTT assays were analyzed using Graph Prism 7.04 software by the Tukey test for multiple comparisons. <br> <b>Dataset</b> <b>Apoptotic cell assay </b>labeling was performed using the Annexin-V) consists of MSC samples from the groups: Control, Diluent 10µL/mL, and VA 10µL/mL and 20μL/mL after <i>in vitro</i> culture. A total of 92.0, 90.9, 96.2, and 91.5% of intact cells were obtained in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. Regarding the percentages of MSC in initial apoptosis, 8.1, 0.5, 1.6, and 2.3% were obtained in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. Additionally, the percentages of cells in final apoptosis were 0.1, 6.7, 1.7, and 5.4% in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. The number of cells in necrosis was below 2% in all treatments analyzed. The population of intact cells in early apoptosis, late apoptosis, and necrosis was evaluated.
DOI: 10.6084/m9.figshare.12140961
title: S1_Table.csv

description: GDS Number and Title
DOI: 10.6084/m9.figshare.12140961.v1
title: S1_Table.csv

description: GDS Number and Title
DOI: 10.6084/m9.figshare.12140988.v1
title: Data set on "In vitro growth kinetics of mesenchymal stem cells in cytotoxicity tests using ultra-diluted Viscum album

description: <i>This dataset consists of three Excel.xlsx format spreadsheets. These are <b>Morphology and Quantification of MSC</b></i><i>, <b>Viability assays (MTT Colorimetric Assay and quantification of MSC)</b>.xlsx, <b>Apoptosis Cell Assay.xlsx.</b></i> <b><i> </i></b> <b><i><br></i></b><b>Dataset Morphology and Quantification of MSC.xlsx </b>shows data on<i> the</i><i> </i>impact of different VA concentrations on the D1D2 dynamization and the impact of its Diluent on MSC viability after 72 hours of <i>in vitro</i> culture, through cell quantification analysis. The number of cells was maintained after <i>in vitro</i> culturing for 72 hours regardless of the diluent concentration used when compared to the control group. Similar MSC morphological characteristics over 24, 48, and 72 hours of <i>in vitro</i> culture were observed between the control group and the group at 10µL/mL of VA. <b><i> </i></b>Data from the cell viability test were subjected to normality analysis using the Shapiro-Wilk test. They were then evaluated for differences between the experimental groups by the paired Wilcoxon test. Data were subjected to regression analysis (PROC REG) for the relevant polynomial regressions.<b><i></i></b> <b><i><br></i></b><b>Dataset of<i> Viability assays MTT Colorimetric Assay shows data on the</i></b><i> </i>MSC were cultured in 96-well plates containing 5x10<sup>-4</sup> cells/mL in 100µl of base MEDIUM at 37.5 °C, 5% CO<sub>2</sub>, for 24 hours for cell stabilization and adhesion. This procedure was performed in double, so half plates would be used for MTT assay and the other half for quantification. After this period, the <i>in vitro</i> culture base MEDIUM was replaced, and the evaluation factor, which contained the diluent and/or VA D1D2 at different concentrations, was added to each group. MSC from all experimental groups and one untreated group (Control) were cultured for a further 48 hours. The results of the MTT assays were analyzed using Graph Prism 7.04 software by the Tukey test for multiple comparisons. <br> <b>Dataset</b> <b>Apoptotic cell assay </b>labeling was performed using the Annexin-V) consists of MSC samples from the groups: Control, Diluent 10µL/mL, and VA 10µL/mL and 20μL/mL after <i>in vitro</i> culture. A total of 92.0, 90.9, 96.2, and 91.5% of intact cells were obtained in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. Regarding the percentages of MSC in initial apoptosis, 8.1, 0.5, 1.6, and 2.3% were obtained in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. Additionally, the percentages of cells in final apoptosis were 0.1, 6.7, 1.7, and 5.4% in the Control, Diluent, VA (10µL/mL), and VA (20µL/mL) groups, respectively. The number of cells in necrosis was below 2% in all treatments analyzed. The population of intact cells in early apoptosis, late apoptosis, and necrosis was evaluated.
DOI: 10.6084/m9.figshare.12137493
title: Elinne bac rRNA fasta

description: dataset
DOI: 10.6084/m9.figshare.12137451
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 2. Whole-rock major (wt. %) and trace element (ppm) data for Dobra Gneiss Type A and Type B samples.
DOI: 10.6084/m9.figshare.12137454
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 1. XRF analyses for the GSJ (Geological 940 Society of Japan) granodiorite 941 standard JG-1a (Imai <i>et al.</i> 1995), including information on typical analytical errors, detection limits.
DOI: 10.6084/m9.figshare.12137490
title: Elinne ATX fasta

description: dataset
DOI: 10.6084/m9.figshare.12137493.v1
title: Elinne bac rRNA fasta

description: dataset
DOI: 10.6084/m9.figshare.12137490.v1
title: Elinne ATX fasta

description: dataset
DOI: 10.6084/m9.figshare.12137448
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 3. REE and selected trace element data from representative Bittesch Gneiss samples.
DOI: 10.6084/m9.figshare.12137451.v1
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 2. Whole-rock major (wt. %) and trace element (ppm) data for Dobra Gneiss Type A and Type B samples.
DOI: 10.6084/m9.figshare.12137445
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 4. U-Pb zircon data for the analysed Dobra Gneiss Type A and Type B samples as well as the paragneiss samples.
DOI: 10.6084/m9.figshare.12137448.v1
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 3. REE and selected trace element data from representative Bittesch Gneiss samples.
DOI: 10.6084/m9.figshare.12137454.v1
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 1. XRF analyses for the GSJ (Geological 940 Society of Japan) granodiorite 941 standard JG-1a (Imai <i>et al.</i> 1995), including information on typical analytical errors, detection limits.
DOI: 10.6084/m9.figshare.12137445.v1
title: The Dobra Gneiss and the Drosendorf Unit in the south-eastern Bohemian Massif, Austria: West-Amazonian crust in the heart of Europe

description: Supplementary material 4. U-Pb zircon data for the analysed Dobra Gneiss Type A and Type B samples as well as the paragneiss samples.
DOI: 10.6084/m9.figshare.12137370
title: File S2

description: The dataset used to calculate the Hedges’ g effect size for the two-sample research design articles.
DOI: 10.6084/m9.figshare.12137343
title: File S1

description: The dataset used to calculate the Hedges’ g effect size for the single-sample research design articles
DOI: 10.6084/m9.figshare.12137370.v1
title: File S2

description: The dataset used to calculate the Hedges’ g effect size for the two-sample research design articles.
DOI: 10.6084/m9.figshare.12137340
title: Elinne LL fastq

description: dataset
DOI: 10.6084/m9.figshare.12137343.v1
title: File S1

description: The dataset used to calculate the Hedges’ g effect size for the single-sample research design articles
DOI: 10.6084/m9.figshare.12137319
title: Elinne HL fastq sample

description: dataset
DOI: 10.6084/m9.figshare.12137340.v1
title: Elinne LL fastq

description: dataset
DOI: 10.6084/m9.figshare.12137277
title: File S3

description: The dataset used to perform the meta-analyses for the 26 achievement rate comparisons
DOI: 10.6084/m9.figshare.12137277.v1
title: File S3

description: The dataset used to perform the meta-analyses for the 26 achievement rate comparisons
DOI: 10.6084/m9.figshare.12137313
title: Data for: A 4.6 Mb inversion leading to PCDH15-LINC00844 and BICC1-PCDH15 fusion transcripts as a new pathogenic mechanism implicated in Usher syndrome type 1

description: This is an archive of DNA and RNA sequences supporting the results presented in this manuscript<br>
DOI: 10.6084/m9.figshare.12137319.v1
title: Elinne HL fastq sample

description: dataset
DOI: 10.6084/m9.figshare.12137268
title: Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

description: Several <i>Trichonympha</i> protist species in the termite gut have independently acquired <i>Desulfovibrio</i> ectosymbionts in apparently different stages of symbiosis. Here, we obtained the near-complete genome sequence of <i>Desulfovibrio </i>phylotype ZnDsv-02, which attaches to the surface of <i>Trichonympha collaris</i> cells, and compared it with a previously obtained genome sequence of ‘<i>Candidatus</i> Desulfovibrio trichonymphae’ phylotype Rs-N31, which is almost completely embedded in the cytoplasm of <i>Trichonympha agilis.</i> Single-nucleotide polymorphism analysis indicated that although Rs-N31 is almost clonal, the ZnDsv-02 population on a single host cell is heterogeneous. Despite these differences, the genome of ZnDsv-02 has been reduced to 1.6 Mb, which is comparable to that of Rs-N31 (1.4 Mb), but unlike other known ectosymbionts of protists with a genome similar in size to their free-living relatives. Except for the presence of a lactate utilization pathway, cell-adhesion components and anti-phage defense systems in ZnDsv-02, the overall gene-loss pattern between the two genomes is very similar, including the loss of genes responsive to environmental changes. Our study suggests that genome reduction can occur in ectosymbionts, even when they can be transmitted horizontally and obtain genes via lateral transfer, and that the symbiont genome size depends heavily on their role in the symbiotic system.<b></b>
DOI: 10.6084/m9.figshare.12137268.v1
title: Parallel reductive genome evolution in Desulfovibrio ectosymbionts independently acquired by Trichonympha protists in the termite gut

description: Several <i>Trichonympha</i> protist species in the termite gut have independently acquired <i>Desulfovibrio</i> ectosymbionts in apparently different stages of symbiosis. Here, we obtained the near-complete genome sequence of <i>Desulfovibrio </i>phylotype ZnDsv-02, which attaches to the surface of <i>Trichonympha collaris</i> cells, and compared it with a previously obtained genome sequence of ‘<i>Candidatus</i> Desulfovibrio trichonymphae’ phylotype Rs-N31, which is almost completely embedded in the cytoplasm of <i>Trichonympha agilis.</i> Single-nucleotide polymorphism analysis indicated that although Rs-N31 is almost clonal, the ZnDsv-02 population on a single host cell is heterogeneous. Despite these differences, the genome of ZnDsv-02 has been reduced to 1.6 Mb, which is comparable to that of Rs-N31 (1.4 Mb), but unlike other known ectosymbionts of protists with a genome similar in size to their free-living relatives. Except for the presence of a lactate utilization pathway, cell-adhesion components and anti-phage defense systems in ZnDsv-02, the overall gene-loss pattern between the two genomes is very similar, including the loss of genes responsive to environmental changes. Our study suggests that genome reduction can occur in ectosymbionts, even when they can be transmitted horizontally and obtain genes via lateral transfer, and that the symbiont genome size depends heavily on their role in the symbiotic system.<b></b>
DOI: 10.6084/m9.figshare.12137112
title: Solid oxide electrolysis stack tests 2010-2019

description: Improvements in solid oxide electrolysis stack testing from 2010-2019. The data shows that reported stack tests are gradually becoming longer and degradation rates are decreasing.
DOI: 10.6084/m9.figshare.12136878
title: Permian igneous clasts from the Matzitzi Formation, southern Mexico: isotopic constraints on the final amalgamation of Pangea

description: Table A.2. Lu-Hf isotopic data of zircons from four volcanic clasts.
DOI: 10.6084/m9.figshare.12136944
title: raw data for qPCR

description: Raw data for Figure 2<br>C(t) values, efficiency of amplification, and values calculated for normalised gene expression analysis for APOE. <br>All technical replicates and biological replicate samples included in the dataset.
DOI: 10.6084/m9.figshare.12136875
title: Permian igneous clasts from the Matzitzi Formation, southern Mexico: isotopic constraints on the final amalgamation of Pangea

description: Table A.1. U-Pb zircon analyses of zircons from conglomerate volcanic clasts.
DOI: 10.6084/m9.figshare.12136836
title: Character matrix for phylogenetic analyses from A new, transitional centrosaurine ceratopsid from the Upper Cretaceous Two Medicine Formation of Montana and the evolution of the ‘<i>Styracosaurus</i>-line' dinosaurs

description: This file includes the nexus file containing the coded character matrix used for the phylogenetic analyses.
DOI: 10.6084/m9.figshare.12136875.v1
title: Permian igneous clasts from the Matzitzi Formation, southern Mexico: isotopic constraints on the final amalgamation of Pangea

description: Table A.1. U-Pb zircon analyses of zircons from conglomerate volcanic clasts.
DOI: 10.6084/m9.figshare.12136836.v1
title: Character matrix for phylogenetic analyses from A new, transitional centrosaurine ceratopsid from the Upper Cretaceous Two Medicine Formation of Montana and the evolution of the ‘<i>Styracosaurus</i>-line' dinosaurs

description: This file includes the nexus file containing the coded character matrix used for the phylogenetic analyses.
DOI: 10.6084/m9.figshare.12136758
title: mc_002.tar.gz

description: MC captcha 2/10
DOI: 10.6084/m9.figshare.12136758.v1
title: mc_002.tar.gz

description: MC captcha 2/10
DOI: 10.6084/m9.figshare.12136638
title: Supplementary Material for: Preeclampsia and the Ten-Year Risk of Incident Chronic Kidney Disease

description: <b><i>Background:</i></b> Although preeclampsia (PE), as an endothelial disorder can lead to renal dysfunction during pregnancy, results of studies focusing on the potential long-term potential effects of PE on renal function are insufficient and those available are controversial. This study investigated the incidence rate and risk of chronic kidney disease (CKD) among women with prior history of PE compared with healthy controls in a long-term population-based study. <b><i>Methods:</i></b> This was a prospective population-based cohort study. Subjects were 1,851 eligible women, aged 20–50 years, with at least 1 pregnancy (177 women with prior-PE and 1,674 non-PE controls) selected from among the Tehran-Lipid and Glucose-Study-participants. A pooled-logistic-regression-model and Cox’s-proportional-hazards-models were utilized to estimate the risk of CKD in women of both PE and without PE groups, after further adjustment for confounders. <b><i>Results:</i></b> Median and interquartile ranges for follow-up durations of the PE and non-PE groups were 7.78 (5.19–10.40) and 7.32 (4.73–11.00) years, respectively. Total cumulative incidence rates of CKD at the median follow-up time of each group were 35/100,000 (95% CI 25/100,000–50/100,000) and 36/100,000 (95% CI 32/100,000–39/100,000) in PE and non-PE women, respectively (<i>p</i> value = 0.90). Based on pooled-logistic-regression-analysis, OR of CKD progression (adjusted for age, body mass index [BMI], systolic blood pressure [SBP], and diastolic blood pressure [DBP]) for the PE group did not differ, compared to their non-PE counterparts (OR 1.04; <i>p</i> value = 0.80; 95% CI 0.77–1.40). Compared to non-PE women, women with prior PE did not have higher hazard ratios (HRs) of developing CKD in the unadjusted model (unadjusted HR 1.1, 95% CI 0.83–1.69, <i>p</i> = 0.35), results which remained unchanged after adjustment for age, BMI, baseline SBP, and DBP. <b><i>Conclusion:</i></b> PE was not found to be a risk factor for CKD. More studies using a prospective cohort design with long-term follow-ups are needed to investigate the relationship between preeclamsia and CKD.
DOI: 10.6084/m9.figshare.12136638.v1
title: Supplementary Material for: Preeclampsia and the Ten-Year Risk of Incident Chronic Kidney Disease

description: <b><i>Background:</i></b> Although preeclampsia (PE), as an endothelial disorder can lead to renal dysfunction during pregnancy, results of studies focusing on the potential long-term potential effects of PE on renal function are insufficient and those available are controversial. This study investigated the incidence rate and risk of chronic kidney disease (CKD) among women with prior history of PE compared with healthy controls in a long-term population-based study. <b><i>Methods:</i></b> This was a prospective population-based cohort study. Subjects were 1,851 eligible women, aged 20–50 years, with at least 1 pregnancy (177 women with prior-PE and 1,674 non-PE controls) selected from among the Tehran-Lipid and Glucose-Study-participants. A pooled-logistic-regression-model and Cox’s-proportional-hazards-models were utilized to estimate the risk of CKD in women of both PE and without PE groups, after further adjustment for confounders. <b><i>Results:</i></b> Median and interquartile ranges for follow-up durations of the PE and non-PE groups were 7.78 (5.19–10.40) and 7.32 (4.73–11.00) years, respectively. Total cumulative incidence rates of CKD at the median follow-up time of each group were 35/100,000 (95% CI 25/100,000–50/100,000) and 36/100,000 (95% CI 32/100,000–39/100,000) in PE and non-PE women, respectively (<i>p</i> value = 0.90). Based on pooled-logistic-regression-analysis, OR of CKD progression (adjusted for age, body mass index [BMI], systolic blood pressure [SBP], and diastolic blood pressure [DBP]) for the PE group did not differ, compared to their non-PE counterparts (OR 1.04; <i>p</i> value = 0.80; 95% CI 0.77–1.40). Compared to non-PE women, women with prior PE did not have higher hazard ratios (HRs) of developing CKD in the unadjusted model (unadjusted HR 1.1, 95% CI 0.83–1.69, <i>p</i> = 0.35), results which remained unchanged after adjustment for age, BMI, baseline SBP, and DBP. <b><i>Conclusion:</i></b> PE was not found to be a risk factor for CKD. More studies using a prospective cohort design with long-term follow-ups are needed to investigate the relationship between preeclamsia and CKD.
DOI: 10.6084/m9.figshare.12136692.v1
title: Data used to quantify the life cycle cost of a typical Bahraini residential building using reinforced concrete and structural insulated panel (SIP), over 50 years, and including operational energy

description: This dataset contains all the data used in the quantification of the life cycle cost of a typical reinforced concrete house in Bahrain, as well as its structural insulated panel (SIP) equivalent, over 50 years, and including the cooling energy demand.<br>A table of contents on the first page helps navigating the dataset.
DOI: 10.6084/m9.figshare.12136380
title: Jerash Silver Scroll: Computed Tomography Data

description: Computed Tomography of an Early Islamic Silver Scroll found in Jerash/Jordan by the Danish-German Jerash Northwest Quarter Project (Universities of Aarhus and Münster)<br>The computed tomography was conducted by the company Vohtec in Garching in February 2015. Vohtec used the Phoenix GE v|tome|x M equipped with a 300 kV microfocus X-ray tube and a 2k imaging detector. The scan was done at an X-ray voltage of 270 kV and a current of 87 μA. The imaging set up produced a magnification of approx. 8,5x with a voxel size of approx. 23 μm. The 3D volume was created on the basis of 1,600 2D X-ray images recorded during the scan as the object was rotated 360° around its main axis.<br>In addition to the publications mentioned below, the data was recently processed by: Baum, Daniel; Herter, Felix; Lepper, Verena M. (2020): Jerash Silver Scroll: Virtually Unfolded Volume. figshare. Dataset. DOI: 10.6084/m9.figshare.12145236
DOI: 10.6084/m9.figshare.12136323
title: 3mc_1_canny_edge_clean_020.tif

description: Radiographic image of cavity collapse
DOI: 10.6084/m9.figshare.12136236
title: downloaded data files

description: These zip files contain important process data of our study, which were generated based on the adopted empirical data and were used in many computational experiments; for instance, various null configuration models for the empirical network.
DOI: 10.6084/m9.figshare.12136185
title: Mazumdaer A et al study indian population data

description: Muzumder A et al study on SARS-CoV-2 epidemic in India, excel sheet containing indian population data<br>
DOI: 10.6084/m9.figshare.12136191
title: bcFHN.brain

description: Reduced connectome of brainstem for FHN simulation<br>
DOI: 10.6084/m9.figshare.12136158
title: Mazumdaer A et al study full patient dataset COVID19

description: Muzumder A et al study on SARS-CoV-2 epidemic in India, excel sheet containing full patient dataset
DOI: 10.6084/m9.figshare.12136191.v1
title: bcFHN.brain

description: Reduced connectome of brainstem for FHN simulation<br>
DOI: 10.6084/m9.figshare.12136149
title: Mazumdaer A et al study data for figure 1

description: Muzumder A et al study on SARS-CoV-2 epidemic in India, excel sheet containing data for figure 1