cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7250108
title: Zika virus genome sequencing directly from field collected mosquitoes

description: Zika virus (ZIKV) is a negative sense RNA virus from the Flaviviridae family. ZIKV was a relatively unknown virus until the first epidemic in Micronesia in 2007 and further spread to French Polynesia and the Americas being responsible for millions of human infections and associated with neurological disorders in infants and adults. Although ZIKV transmission can be associated with sexual intercourse and blood transfusion, the main mode of transmission is similar to other arboviruses (such as Dengue and Chikungunya viruses) through the mosquito bite. Evidences suggest that both Aedes aegypti and Culex quinquefasciatus are able to replicate and transmit the virus, but so far the large majority of the studies were restricted to laboratory experiments. Here we employed an extensive mosquito field sampling in the Recife metropolitan area (the epicenter of the 2015-2016 ZIKV epidemics) associated with molecular detection with quantitative RT-PCR and viral whole genome sequencing in order to investigate if arboviruses surveillance can be performed at epidemic situations and whether information can be obtained from the natural viral variability. We were able to sequence 10 draft ZIKV genomes, 5 pools from each Ae. aegypti Culex quinquefasciatus species. Genome coverage breadth ranged from 16 to 100% and average depth from 45 to 1000x. Overall, our data shows that both Ae. aegypti and Cx. quinquefasciatus can act as ZIKV vectors and that no mutations that could lead to adaptation in different vector species occurred. Lastly, we are able to recover partial and full ZIKV genomes from those samples corroborating that arboviruses surveillance can be performed using mosquitoes sampling and viral genotyping by qRT-PCR associated with viral whole genome sequencing in order to obtain more in depth information about natural viral genomic variability.<br>
DOI: 10.7284/130495
title: Rain Gauge data collected during research cruise SKQ201815T using a RM Young 50202 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7250108.v1
title: Zika virus genome sequencing directly from field collected mosquitoes

description: Zika virus (ZIKV) is a negative sense RNA virus from the Flaviviridae family. ZIKV was a relatively unknown virus until the first epidemic in Micronesia in 2007 and further spread to French Polynesia and the Americas being responsible for millions of human infections and associated with neurological disorders in infants and adults. Although ZIKV transmission can be associated with sexual intercourse and blood transfusion, the main mode of transmission is similar to other arboviruses (such as Dengue and Chikungunya viruses) through the mosquito bite. Evidences suggest that both Aedes aegypti and Culex quinquefasciatus are able to replicate and transmit the virus, but so far the large majority of the studies were restricted to laboratory experiments. Here we employed an extensive mosquito field sampling in the Recife metropolitan area (the epicenter of the 2015-2016 ZIKV epidemics) associated with molecular detection with quantitative RT-PCR and viral whole genome sequencing in order to investigate if arboviruses surveillance can be performed at epidemic situations and whether information can be obtained from the natural viral variability. We were able to sequence 10 draft ZIKV genomes, 5 pools from each Ae. aegypti Culex quinquefasciatus species. Genome coverage breadth ranged from 16 to 100% and average depth from 45 to 1000x. Overall, our data shows that both Ae. aegypti and Cx. quinquefasciatus can act as ZIKV vectors and that no mutations that could lead to adaptation in different vector species occurred. Lastly, we are able to recover partial and full ZIKV genomes from those samples corroborating that arboviruses surveillance can be performed using mosquitoes sampling and viral genotyping by qRT-PCR associated with viral whole genome sequencing in order to obtain more in depth information about natural viral genomic variability.<br>
DOI: 10.6084/m9.figshare.7250153.v7
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.6084/m9.figshare.7250153.v8
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.7284/130503
title: SSV (Sound Speed Velocimeter) data collected during research cruise SKQ201815T using a AML SV Xchange instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7250078
title: Persistence of Chikungunya virus ECSA genotype from 2014 to 2016 in Bahia state, Brazil

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; direction: ltr; color: #00000a; line-height: 120%; text-align: left; orphans: 2; widows: 2 } p.western { font-family: "Cambria", serif; font-size: 12pt; so-language: en-US } p.cjk { font-family: "MS Mincho"; font-size: 12pt; so-language: en-US } p.ctl { font-family: "Times New Roman"; font-size: 12pt; so-language: ar-SA } a:link { color: #0563c1 } The CHIKV-ECSA virus lineage was first detected in Brazil at municipality of Feira de Santana (FSA), by mid 2014. Here we examine the genomic diversity of CHIKV strains circulating in FSA until 2016 to inspect whether the virus has acquired mutations associated with increased viral fitness.
DOI: 10.6084/m9.figshare.7250078.v1
title: Persistence of Chikungunya virus ECSA genotype from 2014 to 2016 in Bahia state, Brazil

description: @page { margin: 2cm } p { margin-bottom: 0.25cm; direction: ltr; color: #00000a; line-height: 120%; text-align: left; orphans: 2; widows: 2 } p.western { font-family: "Cambria", serif; font-size: 12pt; so-language: en-US } p.cjk { font-family: "MS Mincho"; font-size: 12pt; so-language: en-US } p.ctl { font-family: "Times New Roman"; font-size: 12pt; so-language: ar-SA } a:link { color: #0563c1 } The CHIKV-ECSA virus lineage was first detected in Brazil at municipality of Feira de Santana (FSA), by mid 2014. Here we examine the genomic diversity of CHIKV strains circulating in FSA until 2016 to inspect whether the virus has acquired mutations associated with increased viral fitness.
DOI: 10.6084/m9.figshare.7250153.v9
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.6084/m9.figshare.7250069
title: May 2, 2012 X-band 15-minute ensemble data

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y).
DOI: 10.7284/130507
title: Water Temperature data collected during research cruise SKQ201815T using a HEITRONICS CT15.10 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7250153.v10
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.6084/m9.figshare.7250069.v1
title: May 2, 2012 X-band 15-minute ensemble data

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y).
DOI: 10.6084/m9.figshare.7250153.v12
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.7284/132185
title: Water Temperature data collected during research cruise SKQ201815T using a Sea-Bird SBE-38 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7250063
title: Fossil Shrimp

description: Araripe Basin, fossil, Shrimp
DOI: 10.6084/m9.figshare.7250063.v2
title: Fossil Shrimp

description: Araripe Basin, fossil, Shrimp
DOI: 10.6084/m9.figshare.7250153.v11
title: All May 2012 X-band 15-minute ensemble data (New River Inlet Project)

description: Matlab file (.mat) contains 15-minute averaged X-band data (a60) and corresponding latitude (latgrid), longitude (longrid), and cartesian grids (X and Y). Last 12 digits of file is the timestamp. For example polavg15polavg201205102344 is the file from May 10, 2012 at 2344 UTC.
DOI: 10.7284/129300
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SKQ201816S using a Hawaii UHDAS instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7250063.v1
title: Fossil Shirmp

description: Araripe Basin, fossil, Shrimp
DOI: 10.7284/129297
title: Anemometer data collected during research cruise SKQ201816S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129298
title: Anemometer data collected during research cruise SKQ201816S using a Gill WindObserver 75 instrument system onboard the platform RV Sikuliaq

description: Processed data created by vessel technician during a Field_expedition
DOI: 10.7284/129281
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SKQ201816S using a Sea-Bird SBE-911+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129282
title: Expendable Probe data collected during research cruise SKQ201816S using a Sippican MK21 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129284
title: Flowmeter data collected during research cruise SKQ201816S using a Omega FP-2541 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129285
title: Flowmeter data collected during research cruise SKQ201816S using a Krohne Optiflux 5000 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129286
title: Fluorometer data collected during research cruise SKQ201816S using a Turner Cyclops-7 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129287
title: GNSS (Global Navigation Satellite System) data collected during research cruise SKQ201816S using a C&C C-Nav 3050 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7248782
title: Data package for: Drought-Induced Accumulation of Root Exudates Supports Post-drought Recovery of Microbes in Mountain Grassland

description: In this grassland mesocosm study we used 13C pulse-chase labeling to investigate the link between plant and soil microbial processes during drought and recovery. Our results indicated that, despite reduced plant carbon assimilation, roots continued to exudate easily degradable organic carbon into soil at severe drought. We observed that plant-derived carbon accumulated in the rhizosphere, likely due to limited substrate diffusion in dry soil and microbial stress responses reducing carbon cycling. Shortly after rewetting the mesocosms, the link between plants and soil microorganisms fully recovered and previously accumulated plant-derived carbon in the rhizosphere disappeared. We conclude that the drought-induced accumulation of root exudates supports the post-drought recovery of soil microorganisms. <br>
DOI: 10.7284/129283
title: Gravimeter data collected during research cruise SKQ201816S using a Bell BGM-3 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7248782.v1
title: Data package for: Drought-Induced Accumulation of Root Exudates Supports Post-drought Recovery of Microbes in Mountain Grassland

description: In this grassland mesocosm study we used 13C pulse-chase labeling to investigate the link between plant and soil microbial processes during drought and recovery. Our results indicated that, despite reduced plant carbon assimilation, roots continued to exudate easily degradable organic carbon into soil at severe drought. We observed that plant-derived carbon accumulated in the rhizosphere, likely due to limited substrate diffusion in dry soil and microbial stress responses reducing carbon cycling. Shortly after rewetting the mesocosms, the link between plants and soil microorganisms fully recovered and previously accumulated plant-derived carbon in the rhizosphere disappeared. We conclude that the drought-induced accumulation of root exudates supports the post-drought recovery of soil microorganisms. <br>
DOI: 10.7284/129288
title: Gyrocompass data collected during research cruise SKQ201816S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129289
title: Gyrocompass data collected during research cruise SKQ201816S using a Sperry NAVIGAT 2100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129301
title: INS (Inertial Navigation System) data collected during research cruise SKQ201816S using a Kongsberg Seapath 320+ instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129290
title: Meteorological Station data collected during research cruise SKQ201816S using a Vaisala WXT520 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7247336
title: <i>Craspedostauros alatus</i> sp. nov., a new diatom (Bacillariophyta) species found on museum sea turtle specimens

description: Several populations of a new <i>Craspedostauros</i> species were observed on museum specimens of juvenile green turtle and Kemp’s ridleys collected from Long Island Beach, New York, USA. The new taxon, <i>Craspedostauros alatus</i> Majewska & Ashworth sp. nov., exhibits a distinctive set of morphological features typical of the genus, including cribrate areolae, a stauros narrower than the fascia, multiple doubly perforated girdle bands, and two fore and aft chloroplasts, but clearly differs from all known <i>Craspedostauros</i> species in possessing partially fused proximal helictoglossae forming an internal thickening with a shallow central cavity, distinctive external wing-like silica flaps near the apices, and a combination of valve dimensions and stria density not observed in other taxa. The same taxon was identified in the NCMA culture collection (strain CCMP120), isolated in 1967 from a sample collected from the equatorial upwelling zone in the Pacific Ocean. Nine samples from three sea turtle species were collected from the same location (Long Island Beach). Statistical analyses suggested that the epizoic diatom flora composition was not affected by the collection season but differed among sea turtle species. The most significant difference was observed between the samples with and without <i>C. alatus</i>. Samples with <i>C. alatus</i> were always dominated by <i>Achnanthes elongata</i> and <i>Berkeleya</i> cf. <i>rutilans</i>, while those lacking the new taxon were characterized by remarkably higher contributions of epizoic <i>Poulinea</i> species. This observation suggests that the microhabitat provided by each sea turtle differs among specimens, which may be related to the different stages of biofilm development on the host sea turtle. Additionally, the value of zoological museum collections for epizoic diatom surveys is briefly discussed.
DOI: 10.6084/m9.figshare.7247327
title: Evolution of extreme wave groups: experimental and computational data

description: The data set contains experimental records of surface elevation for a travelling wave groups in an experimental wave flume and simulated results of the same set of experiments by an Lagrangian wave model and an olaFlow OpenFOAM VoF model. Descriptions of the experiments and of the numerical models are given in the provided reference. For the numerical models only the data for surface elevation directly comparable with the experimental data is presented. The numerical data set contains data from the cases used in the Results section of the reference (Section 5). See Section 5 of the reference for parameters of the numerical models.
DOI: 10.6084/m9.figshare.7247336.v1
title: <i>Craspedostauros alatus</i> sp. nov., a new diatom (Bacillariophyta) species found on museum sea turtle specimens

description: Several populations of a new <i>Craspedostauros</i> species were observed on museum specimens of juvenile green turtle and Kemp’s ridleys collected from Long Island Beach, New York, USA. The new taxon, <i>Craspedostauros alatus</i> Majewska & Ashworth sp. nov., exhibits a distinctive set of morphological features typical of the genus, including cribrate areolae, a stauros narrower than the fascia, multiple doubly perforated girdle bands, and two fore and aft chloroplasts, but clearly differs from all known <i>Craspedostauros</i> species in possessing partially fused proximal helictoglossae forming an internal thickening with a shallow central cavity, distinctive external wing-like silica flaps near the apices, and a combination of valve dimensions and stria density not observed in other taxa. The same taxon was identified in the NCMA culture collection (strain CCMP120), isolated in 1967 from a sample collected from the equatorial upwelling zone in the Pacific Ocean. Nine samples from three sea turtle species were collected from the same location (Long Island Beach). Statistical analyses suggested that the epizoic diatom flora composition was not affected by the collection season but differed among sea turtle species. The most significant difference was observed between the samples with and without <i>C. alatus</i>. Samples with <i>C. alatus</i> were always dominated by <i>Achnanthes elongata</i> and <i>Berkeleya</i> cf. <i>rutilans</i>, while those lacking the new taxon were characterized by remarkably higher contributions of epizoic <i>Poulinea</i> species. This observation suggests that the microhabitat provided by each sea turtle differs among specimens, which may be related to the different stages of biofilm development on the host sea turtle. Additionally, the value of zoological museum collections for epizoic diatom surveys is briefly discussed.
DOI: 10.7284/129291
title: Radiometer data collected during research cruise SKQ201816S using a RMR Co. PRP instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129292
title: Radiometer data collected during research cruise SKQ201816S using a Biospherical QSR-2150 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7247327.v2
title: Evolution of extreme wave groups: experimental and computational data

description: The data set contains experimental records of surface elevation for a travelling wave groups in an experimental wave flume and simulated results of the same set of experiments by an Lagrangian wave model and an olaFlow OpenFOAM VoF model. Descriptions of the experiments and of the numerical models are given in the provided reference. For the numerical models only the data for surface elevation directly comparable with the experimental data is presented. The numerical data set contains data from the cases used in the Results section of the reference (Section 5). See Section 5 of the reference for parameters of the numerical models.
DOI: 10.6084/m9.figshare.7247327.v1
title: DATA.zip

description: The data set contains experimental records of surface elevation for a travelling wave groups in an experimental wave flume and simulated results of the same set of experiments by an Lagrangian wave model and an olaFlow OpenFOAM VoF model. Descriptions of the experiments and of the numerical models are given in the provided reference. For the numerical models only the data for surface elevation directly comparable with the experimental data is presented. The numerical data set contains data from the cases used in the Results section of the reference (Section 5). See Section 5 of the reference for parameters of the numerical models.
DOI: 10.7284/129293
title: Singlebeam Echosounder data collected during research cruise SKQ201816S using a Kongsberg TOPAS PS-18 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129294
title: Singlebeam Echosounder data collected during research cruise SKQ201816S using a L-3 ELAC LAZ 5100 instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7247291
title: Oxbrough et al Data Heterogeneity PLOS ONE paper.xlsx

description: The data for the paper 'Natural succession and clearcutting as drivers of environmental heterogeneity and beta diversity in North American boreal forests, published by PLOS ONE. Due to the journal requirements it was necessary to publish this data prior to paper acceptance. Hence no further details on date or DOI at this time. All methodological details and ethical statements can be found on the paper.
DOI: 10.6084/m9.figshare.7247291.v1
title: Oxbrough et al Data Heterogeneity PLOS ONE paper.xlsx

description: The data for the paper 'Natural succession and clearcutting as drivers of environmental heterogeneity and beta diversity in North American boreal forests, published by PLOS ONE. Due to the journal requirements it was necessary to publish this data prior to paper acceptance. Hence no further details on date or DOI at this time. All methodological details and ethical statements can be found on the paper.
DOI: 10.7284/129295
title: SSV (Sound Speed Velocimeter) data collected during research cruise SKQ201816S using a AML SV Xchange instrument system onboard the platform RV Sikuliaq

description: Original (unprocessed) data collected during a Field_expedition