cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4527039
title: Voyager-1 recording with Allen Telescope Array on 2020-11-14: scan 4/4

description: This dataset contains a recording of X-band telemetry signals from Voyager-1 recorded with Allen Telescope Array on 2020-11-14. Antennas 1a and 4g from the array were used in dual XY (linear) polarization. The hardware configuration was as follows: both antennas were connected to RFCB LO d, which was tuned to a frequency of 8419.7 MHz and used an output IF of 512 MHz. A USRP N321 and a USRP N320 were connected to the IF output of the RFCB. The N321 digitized both polarizations from antenna 1a, while the N320 digitized both polarizations of antenna 4g. The USRPs were synchronized by using external 10 MHz reference and PPS coming from the observatory distribution system. The LO from the N321 was shared to all the channels involved in the recording. The IQ sample rate of the USRPs was 960 ksps. A GNU Radio flowgraph was used to record the 16 bit IQ signals to disk using the GNU Radio metatata file format, with detached headers. After recording, the data was converted to SigMF format by adding the suitable metadata. The observation was organized in four scans of 30 minutes each, with gaps of 5 minutes between them where a phase calibrator was observed. This dataset contains the scan 4/4.
DOI: 10.6084/m9.figshare.14036561
title: Two camera recording of a mouse

description: A two view video of a mouse performing a decision making task. More details can be found in the README file. Data collected by Simon Musall while in the lab of Anne Churchland at Cold Spring Harbor Laboratory. This data is a reformatted subset of the original publicly released dataset available at https://dx.doi.org/10.14224/1.38599.
DOI: 10.6084/m9.figshare.14036573
title: OM252 16S phylogeny files and scripts

description: Files and scripts related to inference of 16S rRNA gene phylogeny
DOI: 10.6084/m9.figshare.14036573.v1
title: 16S phylogeny files and scripts

description: Files and scripts related to inference of 16S rRNA gene phylogeny
DOI: 10.6084/m9.figshare.14036579
title: OM252 enriched functions

description: Anvi'o enriched functions output for annotated genes.
DOI: 10.6084/m9.figshare.14036588
title: OM252 progressiveMauve alignment files

description: ProgressiveMauve genome alignments for LSUCC0096 and HIMB30
DOI: 10.6084/m9.figshare.14036588.v1
title: OM252 progressiveMauve alignment files

description: ProgressiveMauve genome alignments for LSUCC0096 and HIMB30
DOI: 10.6084/m9.figshare.14036594
title: OM252 phylogenomics

description: Files and scripts associated with phylogenomic analysis of OM252 clade.
DOI: 10.6084/m9.figshare.14036594.v1
title: OM252 phylogenomics

description: Files and scripts associated with phylogenomic analysis of OM252 clade.
DOI: 10.5517/ccdc.csd.cc23trnc
title: CCDC 1961173: Experimental Crystal Structure Determination

description: Related Article: Jingjing Wang, Xue Liu, Ziyan Wu, Feng Li, Ming-Liang Zhang, Yiman Mi, Junhao Wei, Yao Zhou, Lantao Liu|2021|Chem.Commun.|57|1506|doi:10.1039/D0CC07181A
DOI: 10.5517/ccdc.csd.cc242ryy
title: CCDC 1968870: Experimental Crystal Structure Determination

description: Related Article: Masood Loni, Yaser Balmohammadi, Reza Dadgar Yeganeh, Kaveh Imani, Behrouz Notash, Ayoob Bazgir|2021|New J.Chem.|45|3290|doi:10.1039/D0NJ06301K
DOI: 10.5517/ccdc.csd.cc246zfs
title: CCDC 1972915: Experimental Crystal Structure Determination

description: Related Article: Jingjing Wang, Xue Liu, Ziyan Wu, Feng Li, Ming-Liang Zhang, Yiman Mi, Junhao Wei, Yao Zhou, Lantao Liu|2021|Chem.Commun.|57|1506|doi:10.1039/D0CC07181A
DOI: 10.5517/ccdc.csd.cc2594g3
title: CCDC 2004784: Experimental Crystal Structure Determination

description: Related Article: Virgile Trannoy, Anne Léaustic, Sophie Gadan, Régis Guillot, Clémence Allain, Gilles Clavier, Sandra Mazerat, Bernard Geffroy, Pei Yu|2021|New J.Chem.|45|3014|doi:10.1039/D0NJ05600F
DOI: 10.5517/ccdc.csd.cc25v37d
title: CCDC 2021083: Experimental Crystal Structure Determination

description: Related Article: Xiaoxuan Wang, Chunxuan Qi, Zhiyuan Fu, Haoke Zhang, Jianguo Wang, Hai-Tao Feng, Kai Wang, Bo Zou, Jacky W. Y. Lam, Ben Zhong Tang|2021|Materials Horizons|8|630|doi:10.1039/D0MH01251C
DOI: 10.5517/ccdc.csd.cc25v38f
title: CCDC 2021084: Experimental Crystal Structure Determination

description: Related Article: Xiaoxuan Wang, Chunxuan Qi, Zhiyuan Fu, Haoke Zhang, Jianguo Wang, Hai-Tao Feng, Kai Wang, Bo Zou, Jacky W. Y. Lam, Ben Zhong Tang|2021|Materials Horizons|8|630|doi:10.1039/D0MH01251C
DOI: 10.5517/ccdc.csd.cc25v39g
title: CCDC 2021085: Experimental Crystal Structure Determination

description: Related Article: Xiaoxuan Wang, Chunxuan Qi, Zhiyuan Fu, Haoke Zhang, Jianguo Wang, Hai-Tao Feng, Kai Wang, Bo Zou, Jacky W. Y. Lam, Ben Zhong Tang|2021|Materials Horizons|8|630|doi:10.1039/D0MH01251C
DOI: 10.5517/ccdc.csd.cc26k5b9
title: CCDC 2042290: Experimental Crystal Structure Determination

description: Related Article: Artem O. Surov, Alexander P. Voronin, Nikita A. Vasilev, Andrey B. Ilyukhin, German L. Perlovich|2021|New J.Chem.|45|3034|doi:10.1039/D0NJ05644H
DOI: 10.5517/ccdc.csd.cc26k5dc
title: CCDC 2042292: Experimental Crystal Structure Determination

description: Related Article: Artem O. Surov, Alexander P. Voronin, Nikita A. Vasilev, Andrey B. Ilyukhin, German L. Perlovich|2021|New J.Chem.|45|3034|doi:10.1039/D0NJ05644H
DOI: 10.5517/ccdc.csd.cc26rbkw
title: CCDC 2048218: Experimental Crystal Structure Determination

description: Related Article: Fei-Fei Wang, Jia-Hui Li, Hai-Yan Liu, Shu-Ping Deng, Ying-Ying Liu, Jian-Fang Ma|2021|New J.Chem.|45|3181|doi:10.1039/D0NJ06051H
DOI: 10.5517/ccdc.csd.cc26rblx
title: CCDC 2048219: Experimental Crystal Structure Determination

description: Related Article: Fei-Fei Wang, Jia-Hui Li, Hai-Yan Liu, Shu-Ping Deng, Ying-Ying Liu, Jian-Fang Ma|2021|New J.Chem.|45|3181|doi:10.1039/D0NJ06051H
DOI: 10.5517/ccdc.csd.cc26rbmy
title: CCDC 2048220: Experimental Crystal Structure Determination

description: Related Article: Fei-Fei Wang, Jia-Hui Li, Hai-Yan Liu, Shu-Ping Deng, Ying-Ying Liu, Jian-Fang Ma|2021|New J.Chem.|45|3181|doi:10.1039/D0NJ06051H
DOI: 10.5517/ccdc.csd.cc26k4pm
title: CCDC 2042270: Experimental Crystal Structure Determination

description: Related Article: Svetlana A. Katkova, Konstantin V. Luzyanin, Alexander S. Novikov, Mikhail A. Kinzhalov|2021|New J.Chem.|45|2948|doi:10.1039/D0NJ05457G
DOI: 10.5517/ccdc.csd.cc26k4nl
title: CCDC 2042269: Experimental Crystal Structure Determination

description: Related Article: Svetlana A. Katkova, Konstantin V. Luzyanin, Alexander S. Novikov, Mikhail A. Kinzhalov|2021|New J.Chem.|45|2948|doi:10.1039/D0NJ05457G
DOI: 10.5517/ccdc.csd.cc26ttwr
title: CCDC 2050615: Experimental Crystal Structure Determination

description: Related Article: Svetlana A. Katkova, Konstantin V. Luzyanin, Alexander S. Novikov, Mikhail A. Kinzhalov|2021|New J.Chem.|45|2948|doi:10.1039/D0NJ05457G
DOI: 10.5517/ccdc.csd.cc26w6dq
title: CCDC 2051933: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26w6fr
title: CCDC 2051934: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26w6gs
title: CCDC 2051935: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26w6ht
title: CCDC 2051936: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26w6jv
title: CCDC 2051937: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26w6kw
title: CCDC 2051938: Experimental Crystal Structure Determination

description: Related Article: Věra Varmužová, Filip Horký, Petr Štěpnička|2021|New J.Chem.|45|3319|doi:10.1039/D1NJ00080B
DOI: 10.5517/ccdc.csd.cc26gjs0
title: CCDC 2039762: Experimental Crystal Structure Determination

description: Related Article: Francesco Isaia, Alessandra Garau, Carlo Castellano, Francesco Demartin, M. Carla Aragoni, Massimiliano Arca, Claudia Caltagirone, Vito Lippolis, Tiziana Pivetta|2021|New J.Chem.|45|3263|doi:10.1039/D0NJ05601D
DOI: 10.5517/ccdc.csd.cc26gjt1
title: CCDC 2039763: Experimental Crystal Structure Determination

description: Related Article: Francesco Isaia, Alessandra Garau, Carlo Castellano, Francesco Demartin, M. Carla Aragoni, Massimiliano Arca, Claudia Caltagirone, Vito Lippolis, Tiziana Pivetta|2021|New J.Chem.|45|3263|doi:10.1039/D0NJ05601D
DOI: 10.6084/m9.figshare.14036597
title: OM252 rubisco phylogeny

description: Files and script for phylogenetic analysis of the OM252 clade RuBisCO large subunit gene.
DOI: 10.6084/m9.figshare.14036597.v1
title: OM252 rubisco phylogeny

description: Files and script for phylogenetic analysis of the OM252 clade RuBisCO large subunit gene.
DOI: 10.5517/ccdc.csd.cc26k5gf
title: CCDC 2042294: Experimental Crystal Structure Determination

description: Related Article: Artem O. Surov, Alexander P. Voronin, Nikita A. Vasilev, Andrey B. Ilyukhin, German L. Perlovich|2021|New J.Chem.|45|3034|doi:10.1039/D0NJ05644H
DOI: 10.5517/ccdc.csd.cc26k5cb
title: CCDC 2042291: Experimental Crystal Structure Determination

description: Related Article: Artem O. Surov, Alexander P. Voronin, Nikita A. Vasilev, Andrey B. Ilyukhin, German L. Perlovich|2021|New J.Chem.|45|3034|doi:10.1039/D0NJ05644H
DOI: 10.5517/ccdc.csd.cc26k5fd
title: CCDC 2042293: Experimental Crystal Structure Determination

description: Related Article: Artem O. Surov, Alexander P. Voronin, Nikita A. Vasilev, Andrey B. Ilyukhin, German L. Perlovich|2021|New J.Chem.|45|3034|doi:10.1039/D0NJ05644H
DOI: 10.15468/nxnchh
title: Eucinetus linskyi, a new replacement name for preoccupied Eucinetus bicolor Lawrence, 2019, non Reitter, 1887 (Insecta: Coleoptera: Eucinetidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lawrence, John F. (2021): Eucinetus linskyi, a new replacement name for preoccupied Eucinetus bicolor Lawrence, 2019, non Reitter, 1887 (Insecta: Coleoptera: Eucinetidae). Zootaxa 4927 (3): 444, DOI: https://doi.org/10.11646/zootaxa.4927.3.7
DOI: 10.5281/zenodo.4541598
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.5281/zenodo.4541597
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.15468/eudxcy
title: First two cockroaches from the early Eocene of western Rajasthan, India (Insecta Blattodea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Patel, Raman, Rana, Rajendra Singh, Nel, Andre (2021): First two cockroaches from the early Eocene of western Rajasthan, India (Insecta Blattodea). Zootaxa 4927 (3): 445-450, DOI: https://doi.org/10.11646/zootaxa.4927.3.8
DOI: 10.5281/zenodo.4341310
title: The evolution of social parasitism in Formica ants revealed by a global phylogeny

description: Data from publication "The evolution of social parasitism in Formica ants revealed by a global phylogeny". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE), phylogenetic, biogeography, diversification analysis input and output, specimen voucher information.
DOI: 10.5281/zenodo.2646746
title: The evolution of social parasitism in Formica ants revealed by a global phylogeny

description: Data from publication "The evolution of social parasitism in Formica ants revealed by a global phylogeny". Includes assembled contigs, unaligned and aligned ultraconserved element loci (UCE), phylogenetic, biogeography, diversification analysis input and output, specimen voucher information.
DOI: 10.5281/zenodo.4542408
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.5281/zenodo.4542407
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.6084/m9.figshare.12854720.v1
title: Genetic stock structure of New Zealand fish and the use of genomics in fisheries management: an overview and outlook

description: Sustainable management of wild fisheries requires accurate delineation of reproductively isolated stocks to avoid depletion of a commercially and ecologically important resource. However, there is still a lack of reliable information on stock structure for most fishery species in New Zealand. DNA markers can assist in the delineation of stocks, but they also can provide significant insights into other areas related to the genetic diversity and the response to pressures. In this review, we first provide a detailed summary of the population genetic studies of New Zealand fish species, with a particular focus on hoki, orange roughy, snapper, ling, and blue cod. We find that genetic data is uniformly lacking for most species. We then discuss how the global shift from low resolution markers to genomics in fisheries genetics has far reaching consequences for the sustainable management of our aquatic resources, by allowing us to address multiple important pressures that wild fisheries are currently facing, and we introduce some of these briefly. We conclude by emphasising the need for a more systematic and holistic approach for the use of genomics in New Zealand fisheries management, so that the best evidence is available to inform the decisions of policy makers.
DOI: 10.6084/m9.figshare.12854723.v1
title: Analysis of the conservation status of New Zealand freshwater invertebrates: temporal changes, knowledge gaps, impediments, and management implications

description: The 2018 conservation status assessment of freshwater invertebrate taxa was the most comprehensive to date. Of the <i>Threatened</i> and <i>At Risk</i> taxa in 2018 (177 taxa), 48 were listed as <i>Nationally Critical</i>, 14 as <i>Nationally Endangered</i>, 16 as <i>Nationally Vulnerable</i>, 10 as <i>Declining</i>, and 89 as <i>Naturally Uncommon</i>. Most taxa were listed as either <i>Not Threatened</i> (315 taxa) or required more information for assessment (<i>Data Deficient</i>; 178 taxa). Analyses of temporal changes in conservation status since 2002 revealed that the majority of changes were due to greater understanding of taxa distributions, rather than gains or losses in population sizes or area of occupancy. Insufficient data on taxa distributions, along with a lack of autecological information, are two of the major knowledge gaps facing freshwater invertebrate conservation in New Zealand. Further impediments to conservation include (i) a lack of systematics research, (ii) a large number of species remain undiscovered and undescribed, and (iii) the status and trend of populations is unknown for most taxa. We also provide an analysis of the habitats that harbour many of the rarer taxa. Finally, we conclude by recommending a number of actions that should, collectively, help fill these knowledge gaps and address these issues.
DOI: 10.6084/m9.figshare.12854720
title: Genetic stock structure of New Zealand fish and the use of genomics in fisheries management: an overview and outlook

description: Sustainable management of wild fisheries requires accurate delineation of reproductively isolated stocks to avoid depletion of a commercially and ecologically important resource. However, there is still a lack of reliable information on stock structure for most fishery species in New Zealand. DNA markers can assist in the delineation of stocks, but they also can provide significant insights into other areas related to the genetic diversity and the response to pressures. In this review, we first provide a detailed summary of the population genetic studies of New Zealand fish species, with a particular focus on hoki, orange roughy, snapper, ling, and blue cod. We find that genetic data is uniformly lacking for most species. We then discuss how the global shift from low resolution markers to genomics in fisheries genetics has far reaching consequences for the sustainable management of our aquatic resources, by allowing us to address multiple important pressures that wild fisheries are currently facing, and we introduce some of these briefly. We conclude by emphasising the need for a more systematic and holistic approach for the use of genomics in New Zealand fisheries management, so that the best evidence is available to inform the decisions of policy makers.
DOI: 10.5281/zenodo.4542414
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.5281/zenodo.4542413
title: ignition delay experiment

description: Effects of H2S addition on hydrogen ignition behind reflected shockwaves: Experiments and modeling, Olivier Mathieu, Fiona Deguillaume, Eric L. Petersen
DOI: 10.5281/zenodo.4536514
title: Dataset for the paper "On Automatic Parsing of Log Records"

description: This repository contains the dataset described in Section 3.3 of the paper “On Automatic Parsing of Log Records”. Each file contains a specific dataset described in the paper. For example, T_E.txt contains the data for the dataset T<sub>E</sub>. In a file, each log string resides on a separate line and contains a 2-tuple separated by tab (‘\t’). The first element of the tuple is the actual log string that has to be parsed. The second element is the corresponding “translation” specifying the field name for each of the characters of the first element. When using the dataset, please cite it as follows: <pre><code>@article{rand2021log, author = {Jared Rand and Andriy Miranskyy}, title = {{On Automatic Parsing of Log Records}}, journal = {CoRR}, volume = {abs/2102.06320}, year = {2021}, url = {https://arxiv.org/abs/2102.06320}, archivePrefix = {arXiv}, eprint = {2102.06320} } </code></pre>
DOI: 10.5281/zenodo.4536513
title: Dataset for the paper "On Automatic Parsing of Log Records"

description: This repository contains the dataset described in Section 3.3 of the paper “On Automatic Parsing of Log Records”. Each file contains a specific dataset described in the paper. For example, T_E.txt contains the data for the dataset T<sub>E</sub>. In a file, each log string resides on a separate line and contains a 2-tuple separated by tab (‘\t’). The first element of the tuple is the actual log string that has to be parsed. The second element is the corresponding “translation” specifying the field name for each of the characters of the first element. When using the dataset, please cite it as follows: <pre><code>@article{rand2021log, author = {Jared Rand and Andriy Miranskyy}, title = {{On Automatic Parsing of Log Records}}, journal = {CoRR}, volume = {abs/2102.06320}, year = {2021}, url = {https://arxiv.org/abs/2102.06320}, archivePrefix = {arXiv}, eprint = {2102.06320} } </code></pre>
DOI: 10.6084/m9.figshare.3761562.v1776
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4465205
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Sarah Tassell, https://orcid.org/0000-0002-8083-3111. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.4542419
title: Datasets of search_TPS - A Bioinformatics Tool for Efficient Retrieval of High-Confidence Terpene Synthases (TPS) and Application to the Identification of TPS in Coffea and Quillaja

description: Here we have support data for the chapter "A Bioinformatics Tool for Efficient Retrieval of High-Confidence Terpene Synthases (TPS) and Application to the Identification of TPS in Coffea and Quillaja". We include here the guide tree that was used for the development of TPS specific HMM profiles (PB_all.pdf). We detail here the datasets of cured TPS genes we used for tool validation (from<em> Arabidopsis thaliana</em>, <em>Solanum lycopersicum</em> and <em>Setaria italica</em>), in CaseStudy1.xlsx file. We also describe the TPS genes identified in <em>Coffea canephora</em>, <em>Coffea eugenioides</em>, <em>Coffea arabica </em>and <em>Quillaja saponaria (</em>ValidatioTablev1.xlsx). In the case of <em>Q. saponaria</em>, we reassembled the transcriptome based on public RNA-seq data (Bioproject PRJEB8056). We followed the protocol "Best Practices for De Novo Transcriptome Assembly with Trinity" (Published on Tue 29 September 2020 By Adam Freedman, Nathan Weeks [https://informatics.fas.harvard.edu/best-practices-for-de-novo- transcriptome-assembly-with-trinity.html]) and obtained a transcriptome assembly with the following statistics: Total trinity 'genes': 36582 Total trinity transcripts: 47608 Median contig length: 547 Average contig: 787.36 The transcripts were annotated using the Trinotate v3.2.1 pipeline (http://trinotate.github.io). All of the annotated peptide sequences (Trinity_Qsap_pep.fasta) were used as input for search_TPS. search_TPS (search_TPS_Tutorialvf.pdf) is freely available at https://github.com/liliane-sntn/TPS. To report bugs, to ask for help and to give any feedback, please contact Liliane S. Oliveira (liliane.sntn@gmail.com) or Douglas S. Domingues (douglas.domingues@unesp.br).
description: This work was partially financed by the São Paulo State Research Foundation (FAPESP) (grants number 2016/10896-0; 2017/01455-2, 2019/15477-3). SMCL receives a CAPES fellowship (Finance Code - 001). DSD is a CNPq research productivity fellow (#312823/2019-3). Douglas S. Domingues, Liliane S. Oliveira and Suzana T. Ivamoto-Suzuki contributed equally to this work.