cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.cg2ph30/1
title: Disease prevalence, host traits and interaction network data

description: Excel file with 7 data sheets: 1)Disease prevalence. It contains the overall prevalence of anther-smut disease across five host species. 2)Flowering phenology_population. It recorded seasonal flowering dynamics and shift of proportion of flowering plants that were diseased across species. 3)Flowering duration_individual. Flowering duration of individual marked plants was measured as the within-season interval from first to last flowering observation.4) Floral traits. Several floral traits of healthy and diseased plants were measured, in order to reveal floral  manipulation by anther-smut disease. 5)Plant traits. Three traits of healthy and diseased plants were measured. 6)Plant-fungus matrix. "1" in each cell indicates the presence of interaction between two taxa, while "0" indicates the absence of of interaction between two taxa. 7)Plant-pollinator matrix. The "1" and "0" respectively has the same mean as in the plant-fungus matrix noted above.
DOI: 10.5061/dryad.dm33k0c/2
title: WhiteheadAndPoveda_AppleDomestication

description: These data show fruit phenolic composition, herbivore resistance measures, and other traits for 56 genotypes of the domesticated apple (Malus domestica) and 52 genotypes of its wild ancestor (Malus sieversii) growing in the United States Department of Agriculture (USDA) national apple germplasm collection in Geneva, NY. The purpose of the study was to examine how fruit chemistry and resistance have changed during apple domestication. Data in the database entitled “WhiteheadAndPoveda_AppleDomestication.csv” are a combination of data collected in this study and data compiled from the USDA Germplasm Resources Information Network – (GRIN) database. Details are provided below for each variable in the database.
DOI: 10.5061/dryad.dq6cv73/1
title: Data_Experiment

description: there are 3 treatments, T0, T1, T2, each 4 rows shows pairs of players, first row: decision (C or D) of player 1, second row: decision of player 2, third row payoff of player 1, fourth row: payoff of player 2; each column is one round of the game, for all pairs there are 49 rounds, for some there are 50 rounds
DOI: 10.5061/dryad.dt1h407/2
title: OR2013-2014

description: Preliminary orchard experiment in 2013 and 2014. Refer to METADATA file for description.
DOI: 10.5061/dryad.dt1h407/3
title: OR2015

description: Preliminary orchard experiment in 2015. Refer to METADATA file for description.
DOI: 10.5061/dryad.fj02s0j/10
title: Supplementary data: RAxML CNEE bootstraps part2
DOI: 10.5061/dryad.fj02s0j/11
title: Supplementary data: RAxML CNEE bootstraps part3
DOI: 10.5061/dryad.fj02s0j/12
title: Supplementary data: RAxML intron bootstraps
DOI: 10.5061/dryad.fj02s0j/13
title: Supplementary data:RAxML UCE bootstraps
DOI: 10.5061/dryad.fj02s0j/16
title: Supplementary data: coalescent simulations
DOI: 10.5061/dryad.fj02s0j/17
title: Supplementary data: CR1 retroelement insertions final dataset
DOI: 10.5061/dryad.fj02s0j/3
title: Supplementary data: species codes
DOI: 10.5061/dryad.fj02s0j/7
title: Supplementary data: phylogenomic subsampling
DOI: 10.5061/dryad.fj02s0j/8
title: Supplementary data: RAxML bestML gene trees
DOI: 10.5061/dryad.fj02s0j/9
title: Supplementary data: RAxML CNEE bootstraps part1
DOI: 10.5061/dryad.gv3r544/1
title: Trees, data files, and R script

description: besttree_icz022.tree = maximum clade credibility tree from best MrBayes run; cottoidei.run1.t = posterior distribution of trees from best MrBayes run; Functional Couping Stats icz022.R = R Script for all analyses in this study; ctdata_icz022.txt = morphological measurements from micro-CT scans of 45 species; CSV files = ecological data
DOI: 10.5061/dryad.j5r716b.1
title: Data from: Integration of anatomy ontologies and evo-devo using structured Markov models suggests a new framework for modeling discrete phenotypic traits
DOI: 10.5061/dryad.j5r716b.1/3.1
title: Supplementary Materials

description: This file contains the scripts of simulations used in the study, and R functions for the construction of structured Markov models.
DOI: 10.5061/dryad.j5r716b.2
title: Data from: Integration of anatomy ontologies and evo-devo using structured Markov models suggests a new framework for modeling discrete phenotypic traits
DOI: 10.5061/dryad.j5r716b.2/1.2
title: Supplementary Appendix

description: Explains the math described in the paper.
DOI: 10.5061/dryad.j5r716b.2/3.2
title: Supplementary Materials

description: This file contains the scripts of simulations used in the study, and R functions for the construction of structured Markov models.
DOI: 10.5061/dryad.jf1m0/1
title: Phenotypic data from a gibberellin application experiment with Crepis tectorum (Asteraceae)

description: The present file contains two data sets used in a study of trait lability and constraint in Crepis tectorum. See the README file for detailed information.
DOI: 10.5061/dryad.kk75k1p/1
title: Table S7.Dataset_Geographical.var

description: Geographical variation of Host-Parasitoid networks across two different spatial scales. The file contains for each network: geographical location, number of hosts, number of parasitoids, number of species, connectance, mean generality, mean vulnerability and parasitoid:host ratios. The environmental variables associated to each location are: mean annual temperature range, and past climatic-change. The source of the original paper where each network was extracted from is also provided.
DOI: 10.5061/dryad.kt5jj49/1
title: Supplementary Material

description: This file contains supplemental methods, tables and figures from a randomized, double-blind placebo-controlled trial conducted to evaluate the efficacy and tolerability of adjunctive lacosamide in children and adolescents (≥4 to &lt;17 years of age) with uncontrolled focal seizures.
DOI: 10.5061/dryad.md87fk1/1
title: transmission_data

description: substrate vibratory transmission dataset - all other raw data is available in the full manuscript
DOI: 10.5061/dryad.mg1rr36/1
title: UKBB_noPCs

description: A GWAS for human height in the UK Biobank.  Linear regression without any structure correction---with only genotype, age, sex and sequencing array as covariates (unrelated British ancestry individuals only). See the paper for the plink command and more details.
DOI: 10.5061/dryad.mg1rr36/2
title: UKBB_sib_gwas

description: A GWAS for human height in the UK Biobank sibs. Family-based sib-pair analysis. See the paper for the plink command and more details.
DOI: 10.5061/dryad.mg1rr36/3
title: IRL-GBR allele frequency differences

description: Logistic regression using self-identified as "White British" or "White Irish" in the UK Biobank were compared with distinct phenotype labels. See  paper for plink command line and more details.
DOI: 10.5061/dryad.mg1rr36/4
title: GBR-TSI allele frequency differences

description: Individuals from the GBR and TSI populations from 1000G Phase 3  were assigned binary phenotype labels and a chi square test was performed for allele frequency differences. See paper for the plink command line and more details.
DOI: 10.5061/dryad.mg1rr36/5
title: UK Biobank Acknowledgement
DOI: 10.5061/dryad.nh053c6/2
title: File S2

description: Genbank files giving sequences of the wild-type and synonymously barcoded viruses.
DOI: 10.5061/dryad.nh053c6/3
title: File S3

description: A text file giving the primers used to amplify the influenza cDNAs for PacBio sequencing.
DOI: 10.5061/dryad.nh053c6/4
title: File S4

description: A CSV file giving the genotypes in Fig. 4.
DOI: 10.5061/dryad.nh053c6/5
title: File S5

description: A CSV file giving the viral mutations and related information in Fig. 5.
DOI: 10.5061/dryad.nh053c6/6
title: File S6

description: Genbank plasmid maps for the mutant genes cloned into the pHW* bi-directional reverse genetics plasmid.
DOI: 10.5061/dryad.nh053c6/7
title: File S7

description: The Jupyter notebook that analyzes the PacBio data.
DOI: 10.5061/dryad.nh053c6/8
title: File S8

description: The Jupyter notebook that analyzes the annotated cell-gene matrix.
DOI: 10.5061/dryad.qp59ck8/1
title: Sims.tar
DOI: 10.5061/dryad.r39mq1q/1
title: Prey attacking behaviour of Stegodyphus sarasinorum
DOI: 10.5061/dryad.s88fv55/1
title: Table S1

description: The table includes data of juvenile whiteness (ventral and tail/wing whiteness), average clutch size, the species body mass, the number of broods and predation rate.
DOI: 10.5061/dryad.s88fv55/2
title: trees

description: This file includes 100 trees downloaded from Birdtree.org for the 210 bird species used in the main analyses.
DOI: 10.5061/dryad.sq7072h/1
title: Cruz et al 2019- Presence data

description: Presence data for four small and medium felids of the Atlantic Forest of Argentina. These data were obtained through the following sampling methods: camera-trap records from the
authors’ own and colleagues’ systematic and non-systematic surveys, roadkills, reliable sightings (i.e. animals seen by experts or a photograph allowing identification by 
experts), and feces identified by DNA analyses.
DOI: 10.5061/dryad.tj11c86/1
title: Semivariogram_meters_2014

description: Resin bag nitrate data from a nearby prairie restoration was used for semivariogram analysis to justify distance between plots in sequentially restored prairies. This data was collected in 2014.
DOI: 10.5061/dryad.tj11c86/2
title: Plant Diversity and Environmental Heterogeneity

description: Plant richness, plant effective number of species, coefficient of variation of resin bag exchangeable soil nitrate, and coefficient of variation of photosynthetically active radiation are contained in this file. This data was collected from sequentially restored restorations on Konza Prairie in 2016.
DOI: 10.5061/dryad.v26qd05/1
title: Supplementary Materials 1

description: Description of 'exact' methods to calculate clade-level significance and additional permutation tests of evolutionary model fitting.
DOI: 10.5061/dryad.v26qd05/2
title: Supplementary Materials 2

description: R code that calculates the variance metric we outline in our manuscript. This code will be incorporated in the R package 'pez', which is available on CRAN (under 'clade.var'); please use the 'pez' version as we will be more easily able to update and maintain the code there.
DOI: 10.5061/dryad.v26qd05/3
title: Supplementary Materials 3

description: R code to run the simulations of our approach, as outlined in our manuscript.
DOI: 10.5061/dryad.v26qd05/4
title: Supplementary Materials 4

description: R code to run our empirical analyses, as outlined in our manuscript. Please note that this script is completely reproducible, and will download the empirical data the user needs to repeat our analyses.
DOI: 10.17632/35fkkrtbj9.1
title: Data for: Refugees and apartment prices: a case study to investigate the attitudes of home buyers

description: This is the Stata file for which we have done our main empirical analysis. A more detailed description of the content as well as do files to obtain the desired results are available upon request.
DOI: 10.17632/5jx45tnnvc.1
title: Data for: Effect of Hysteresis on Petrophysical Properties of Limestone Hydrocarbon Reservoir Rock

description: Data for Loading/Unloading under stress
DOI: 10.17632/8rpzsp9frb.1
title: Data for: Embedded Discrete Fracture Modeling for Compositional Reservoir Simulation using Corner-Point Grids

description: The grid coordinates for the three corner-point grids used in Case 1 are provided.
DOI: 10.17632/dzkztpbcbg.1
title: Data for: A Late Pleistocene and Holocene Vegetation and Environmental Record from Shuangchi Maar, Hainan Province, South China

description: Pollen, charcoal, organic carbon and some fossil algae from the Shuangchi sediment core
DOI: 10.17632/jhbccrfb82.1
title: Data for: A new method to prepare 'Maya red' pigment from sepiolite and Basic red 46
DOI: 10.17632/m4df335gj3.1
title: Data for: Variation in Late Holocene Marine Environments in the Canadian Arctic Archipelago: Evidence from Ringed Seal Stable Isotope Compositions

description: Stable carbon and nitrogen isotope compositions for archaeological ringed seal bone collagen from sites in the central Canadian Arctic. Also included are elemental (%C and %N) compositions of the bone collagen.
DOI: 10.17632/nywdmjc7s8.1
title: Data for: Trade off between Environment, Energy consumption and Human development: Do levels of economic development matter?

description: The dataset collected from secondary sources included World Bank Indicators and UNDP in 2018,
DOI: 10.17632/r5x46j9725.1
title: Data for: Glass-ceramic composite wasteform to immobilize and stabilize a uranium-bearing waste generated from treatment of a spent uranium catalyst
DOI: 10.5061/dryad.008b59c/1
title: Datasets for microsats, pheromone composition, and colour pattern

description: Data for five Melinaea taxa of north-eastern Peru, and putative hybrids between subspecies. The first spreadsheet contains the allele size for the 12 microsatellite loci used in the study, the second spreadsheet contains quantification of the different compounds present in the chemical profile of extracted male hair pencils (ie. androconial scales) obtained by GC-MS, and the third spreadsheet contains the quantification of colour pattern by Colour Pattern Modelling (CPM).
DOI: 10.5061/dryad.008b59c/2
title: Vision model for the monarch butterfly, Danaus plexippus

description: Vision modelling of four effective photoreceptors of the monarch butterfly, Danaus plexippus, based on sensitivity peaks reported by Stalleicke et al. (2006) and Blackiston et al. (2011), and of a dark orange filter reported by Blackiston et al. (2011) and extrapolated from the spectrum presented for Heliconius erato in McCulloch et al. (2016). Relative proportions of photoreceptors are 1:1:3:3.
DOI: 10.5061/dryad.1473s5c/1
title: Genotype and diet datasets

description: The excel file includes three spreadsheets: the first one includes with all the museum specimen of *Crotalus scutulatus* inspected for stomach content; the second one includes a count table of prey items identified in the preserved specimen; The third spreadsheet includes the samples used for population genetic analysis with geographic coordinates, population assignment and microsatellite genotype information.
DOI: 10.5061/dryad.14rf353/1
title: DHA meta-analysis data

description: Percentage of DHA in total fatty acid were obtained from literatures. DHA contents in algae and consumers from marine and freshwater habitats were analyzed.
DOI: 10.5061/dryad.174667c/1
title: Fig1

description: These file archives contain the raw data used in PPATHOGENS-D-18-01928R1.  

It includes excel files (.xlsx), image files (.lif, .tif, .czi), and text files (.txt).

For complete details regarding generation of data presented in this paper please see the corresponding materials and methods section
DOI: 10.5061/dryad.174667c/2
title: Fig2
DOI: 10.5061/dryad.174667c/3
title: Fig3
DOI: 10.5061/dryad.174667c/4
title: Fig4
DOI: 10.5061/dryad.174667c/5
title: Fig5
DOI: 10.5061/dryad.174667c/6
title: S1 Fig
DOI: 10.5061/dryad.174667c/7
title: S2 Fig
DOI: 10.5061/dryad.174667c/8
title: S3 Fig
DOI: 10.5061/dryad.2n054k4/1
title: Supplemental materials
DOI: 10.5061/dryad.3477745/1
title: HBMdata
DOI: 10.5061/dryad.3d23687.1
title: Data from: Tip dating and homoplasy: reconciling the shallow molecular divergences of modern gharials with their long fossil record
DOI: 10.5061/dryad.5j8321f.1
title: Data from: An analysis of the impacts of Cretaceous Oceanic Anoxic Events on global molluscan diversity dynamics
DOI: 10.5061/dryad.5j8321f.1/1.1
title: Table S1

description: The raw occurrence data downloaded from the Paleobiology Database (PBDB) on 6 August 2018. Please see README for search parameters and requested attribution for PBDB.
DOI: 10.5061/dryad.5j8321f.1/2.1
title: Table S2

description: The occurrence dataset used from the Paleobiology Database (PBDB) that has been filtered, validated, and has had stratigraphic singletons removed. Please see README for requested attribution for PBDB.
DOI: 10.5061/dryad.5j8321f.1/3.1
title: Table S3

description: Summary statistics of the 999 bootstrap replicates of μ3 and μg extinction rates. Blank cells indicate time bins where extinction rates could not be calculated.
DOI: 10.5061/dryad.5j8321f.2/3.2
title: Table S3

description: Summary statistics of the 999 bootstrap replicates of μ3 and μg extinction rates. Blank cells indicate time bins where extinction rates could not be calculated.
DOI: 10.5061/dryad.5j8321f.2/4.2
title: Methods Appendix

description: Additional clarification of the methods of taxonomic diversity and extinction rate calculations.
DOI: 10.5061/dryad.68s80k7/1
title: data file (Halophila ovalis)
DOI: 10.5061/dryad.8cn4v87/1
title: Table S4

description: References and effect sizes extracted from studies analysing effect of fire on pollinator abundance. Vd = variance of Hedges’ d. In pollinator taxa column, “insect” indicates several orders.  Biome abbreviations are indicated in Fig. S5 legend.
DOI: 10.5061/dryad.8cn4v87/2
title: Table S5

description: References and effect sizes extracted from studies analysing effect of fire on pollinator richness. Vd = variance of Hedges’ d. In pollinator taxa column, “insect” indicates several orders. Biome abbreviations are indicated in Fig. S5 legend.
DOI: 10.5061/dryad.d7p497r/1
title: bioassay_results

description: Germination and size results from bioassay
DOI: 10.5061/dryad.dc036n6/1
title: community_survey_latlons

description: Latitude and Longitude values for floristic surveys used in this study to identify local-scale species interactions
DOI: 10.5061/dryad.dc036n6/2
title: community_survey_presence_absence

description: Presence/Absence data for hakea species in each floristic survey used in this study
DOI: 10.5061/dryad.dc036n6/3
title: ecoregion_data

description: Ecoregion-level data: species richness, phylogenetic clustering (MPDses), functional dispersion of alpha and beta traits, 4 environmental PC axes and the environmental variables used to produce them.
DOI: 10.5061/dryad.dc036n6/4
title: ecoregion_presence_absence

description: Presence / absnece data of hakea species across ecoregions in Australia
DOI: 10.5061/dryad.fj02s0j/18
title: Supplementary data: rooted_triplets
DOI: 10.5061/dryad.fj02s0j/19
title: Supplementary data: species_trees
DOI: 10.5061/dryad.fj02s0j/50
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part1
DOI: 10.5061/dryad.fj02s0j/51
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part2
DOI: 10.5061/dryad.fj02s0j/52
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part3
DOI: 10.5061/dryad.fj02s0j/53
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part4
DOI: 10.5061/dryad.fj02s0j/54
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part5
DOI: 10.5061/dryad.fj02s0j/55
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part6
DOI: 10.5061/dryad.fj02s0j/56
title: Supplementary data: CR1 retroelement insertions bioinformatic pipeline part7
DOI: 10.5061/dryad.fp030jg/1
title: Daniel_Proc_B_2019_Data
DOI: 10.5061/dryad.mj58cj6/1
title: Interspecific visitation of cattle and badgers to fomites. A transmission risk for bovine tuberculosis

description: Raw data collected from field study using camera traps and quantifying species at different fomites on farm. These included building entrance, food store, water trough (field), badger sett, badger latrine and a badger run. The study occurred over 2 season in N. Ireland in 2016.
DOI: 10.5061/dryad.n88s5r3/1
title: Data

description: Preference and performance data of three generalist parasitoids.
DOI: 10.5061/dryad.q0ht491/1
title: Microsatellite dataset
DOI: 10.5061/dryad.q0ht491/2
title: Recoded dataset

description: Dataset recoded in Polysat (function recodeAllopoly)
DOI: 10.5061/dryad.r51rh2s/1
title: Daliao River unique molecular formulae obtained from FT-ICR MS

description: The 8889 unique molecular formulae of six Daliao River samples (DL1 to DL6) obtained from FT-ICR MS. For more information, please contact D. He (dinghe@zju.edu.cn).
DOI: 10.5061/dryad.r8576v7/1
title: Cornec et al_Genetic information in houbara vocalisations_Data
DOI: 10.5061/dryad.sj142jj/1
title: Fucus vesiculosus performance measurements

description: Traits of Fucus vesiculosus used for the analyses. Performance  of the algae were measured before and after three-week field manipulation with direct herbivory and with water-borne cues formed in the herbivory. For further details see the original publication.
DOI: 10.5061/dryad.sj142jj/2
title: Fucus vesiculosus phlorotannin data

description: Phlorotannin content of the algae were measured after three-week manipulation in the field conditions with direct herbivory and with water-borne cues formed in the herbivory. For further details see the original publication.
DOI: 10.5061/dryad.vb76300/1
title: Spore loads and virulence data

description: Data showing the influence of host sex on pathogen spore production (i.e. proliferation) and pathogen-induced reduction in host lifespan (i.e. virulence) in each of the single and co-infection treatments.
DOI: 10.5061/dryad.vb76300/2
title: Individual pathogen fitness in co-infections

description: The predicted (based on instantaneous replication rates) and observed spore loads for each pathogen genotype competing in a co-infection (estimated using quantitative microsatellite analysis).
DOI: 10.17632/3mtkh45f2j.1
title: Data for: SPERM MOTILITY AND LIPID COMPOSITION IN INTERNALLY FERTILIZING OCELLATE RIVER STINGRAY POTAMOTRYGON MOTORO

description: File with CASA data of stingray sperm motility
DOI: 10.17632/89wnrk4h88.1
title: Data for: Comparison of the removal behavior of fluoride by Fe3+ modified geomaterials from water.

description: Iron modified materials were studied and an extensive study of their adsorption capacities for fluoride under various conditions: pH, contact time and initial concentration, moreover, the effect of the iron on their structure were analyzed and a possible adsorption mechanisms is given
DOI: 10.17632/mvp67hts38.1
title: Data for: Controls of CO2 - N2 Gas Flood Ratios on Enhanced Shale Gas Recovery and Ultimate CO2 Sequestration
DOI: 10.17632/spt764r29m.1
title: Data for: Virulence properties and sensitivity profile of Candida parapsilosis complex species and Kodamaea ohmeri isolates from onychomycosis of HIV/AIDS patients

description: This study investigated the in vitro adhesion and biofilm formation capacity of Candida parapsilosis and Kodamaea ohmeri isolates from onychomycoses of HIV/AIDS patients and also established the antifungal sensitivity profiles of these isolates. Onychomycosis in HIV/AIDS patients showed a high prevalence of emerging yeasts, among which C. parapsilosis complex species and K. ohmeri were the most frequent. Three C. parapsilosis sensu stricto isolates and two C. orthopsilosis isolates were resistant to amphotericin B and 83% were resistant to terbinafine. All isolates adhered to stainless steel and siliconized latex surfaces, and carbohydrates intensified adhesion of all isolates. Isolates adhered to keratinous nail and 50% formed biofilms with strong intensity. In multispecies or polymicrobial biofilms, C. albicans and Staphylococcus aureus regulated the formation of biofilms, decreasing the number of non-albicans species and of Candida spp. cells, respectively. Nonetheless, the presence of C. parapsilosis sensu stricto or K. ohmeri in mixed biofilms increased the number of viable C. albicans cells. The isolation of emerging yeast species from onychomycosis with high adhesion capacity to medical devices, with many being good biofilm producers, is a result that should be considered relevant in clinical practice. In addition, half of the isolates resistant to at least one of the tested antifungals or were susceptible in a dose-dependent manner, which corroborates the infectious capacity and viability of these isolates.