cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10407428
title: MIVAS study

description: Tabla de contenidos 

The original gut microbiota raw data. The raw sequencing data were analyzed using an internal pipeline. Quality pass filter reads were grouped into operational taxonomic units (OTU). Quality control was performed by discarding paired ends with an overlap of less than 200nt and removing chimeric sequences.
DOI: 10.21223/aurp2p/7kvbp2
title: 03_Data_Canopy_cover_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p/a8trdx
title: HourlyWeatherData_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p/omh6ld
title: DailyWeatherData_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p/zmlyys
title: 01_data_LateBlightSeverity_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p/ggj8i9
title: 06_Evaluation_date_Total biomass dry matter content.xls

description: :unav
DOI: 10.21223/aurp2p/j5sjmd
title: 05_TotalYield_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p/mucqql
title: 02_LateBlight_Evaluation_date.xls

description: :unav
DOI: 10.21223/aurp2p/nv62dn
title: 04_canopy_evaluation_days-1.xls

description: :unav
DOI: 10.21223/aurp2p/qzgsul
title: 07_SpraysOfFungicides_Huancayo.xls

description: :unav
DOI: 10.21223/aurp2p
title: Dataset for: Effect of nitrogen fertilization on potato late blight in the field in Huancayo, Junin Peru

description: The effect of nitrogen (N) fertilization on the development of potato late blight disease, caused by Phytophthora infestans (Mont.) de Bary, was studied through field experiments in two locations in Peru (Huancayo and Oxapampa). These datasets correspond to the field experiments in Huancayo. Three levels of N (0, 160, and 320 kg/ha) and three levels of fungicide were applied in all combinations on two potato (Solanum tuberosum L.) varieties with different levels of resistance (18 treatments), and in four repetitions. N had no effect on the disease when severity was very low or high. At intermediate levels of disease severity, increased N led to increased disease. In Huancayo, the effect of 0 vs. 160 kg·ha-1 of N on the more susceptible variety was negligible because of increased late blight. For the more resistant variety, late blight had little effect on yield when N was applied at 0 or 160 kg·ha-1. Increasing the N fertilization rate to 320 kg·ha-1 did not further increase yield in the absence of late blight, but decreased it sharply in the treatments where the disease was present because no fungicides were applied. These results indicate the importance of considering N fertilization levels in integrated management schemes for potato late blight, and in comparison of results across experiments. If farmers want to increase potato yields with N fertilizer, they may need to use more fungicides or varieties with higher resistance.
DOI: 10.21223/aurp2p/mgd6i1
title: 05_TotalYield_Huancayo.xls

description: :unav
DOI: 10.7274/24870465.v1
title: DNNLikelihood Data

description: This dataset contains model, validation, and analysis data for Prof. Kevin Lannon's DNNLikelihood project by May 2023. In particular, this dataset is what is used in Shenghua Liu's senior thesis and CHEP conference talk. For details on how to use this dataset, please refer to the GitHub repository: https://github.com/NDCMS/NDParticleML.
DOI: 10.7274/24870465
title: DNNLikelihood Data

description: This dataset contains model, validation, and analysis data for Prof. Kevin Lannon's DNNLikelihood project by May 2023. In particular, this dataset is what is used in Shenghua Liu's senior thesis and CHEP conference talk. For details on how to use this dataset, please refer to the GitHub repository: https://github.com/NDCMS/NDParticleML.
DOI: 10.6073/pasta/ea810c27ca1a22bd74968700cdbc9553
title: Estimated Inundation Periods in the Yolo Bypass, 1998 – 2022

description: Largely supported by the Interagency Ecological Program (IEP), California Department of Water Resources (DWR) has operated a fish monitoring program in the Yolo Bypass, a seasonal floodplain and tidal slough, since 1998. The objectives of the Yolo Bypass Fish Monitoring Program (YBFMP) are to: 1. Collect baseline data on water quality, chlorophyll, lower trophic level biota, and fish in the Yolo Bypass to monitor spatial and temporal changes in trends and abundance. 2. Analyze and communicate Yolo Bypass data with interested parties and the scientific and management communities to address pertinent management-related questions. 3. Provide technical expertise on Yolo Bypass aquatic ecology and monitoring and sampling methods. The YBFMP operates a rotary screw trap and fyke trap and conducts biweekly beach seine and lower trophic surveys in addition to maintaining water quality instrumentation in the bypass. The YBFMP informs the restoration actions that are mandated or recommended in these plans and provides critical baseline data on the ecology of the bypass and how it interacts with the broader San Francisco Estuary. YBFMP’s data is often accompanied by information on whether the Yolo Bypass is inundated, as water quality, and species composition and abundance can be greatly altered during inundation. This dataset was created to consistently estimate inundation over time. Estimating inundation in the Yolo Bypass is usually done by referencing stage height in the Sacramento River at Fremont Weir. Stage height is the water level of the river. Fremont Weir is upstream of the Yolo Bypass and when Fremont Weir overtops, or reaches its monitoring stage, the Yolo Bypass is considered inundated.
DOI: 10.11570/23.0030
title: Molecular clouds in M51 from high-resolution extinction mapping
DOI: 10.5281/zenodo.10407770
title: Seismic and Hydrostratigraphic Characterization of the Onshore-Offshore Freshwater Systems of Martha's Vineyard and Nantucket, Massachusetts, USA: Field Survey Report

description: This data archive includes three files: field project report, seisimic data (shot gathers) from Martha's Vineyard, and seismic data (shot gathers) from Nantucket. This work was supported by the National Science Foundation (NSF Award 2052794). Technical support was provided by Geophysical Technology, Inc. (https://geophysicaltechnology.com/), Exploration Instruments (https://www.exiusa.com/) , and Seismic Source (https://seismicsource.com/). Field work in Manuel F. Correllus State Forest was conducted with the approval of the Massachusetts Department of Conservation and Recreation under Research Access Permit #R-209. Daniel Wright and Conor Laffey of the Massachusetts Department of Conservation and Recreation provided local logistical support on Martha’s Vineyard. Field work on Nantucket was conducted with the approval of Wannacommet Water Company. Mark Willett of Wannacommet water company provided local logistical support on Nantucket.
DOI: 10.5281/zenodo.10407771
title: Seismic and Hydrostratigraphic Characterization of the Onshore-Offshore Freshwater Systems of Martha's Vineyard and Nantucket, Massachusetts, USA: Field Survey Report

description: This data archive includes three files: field project report, seisimic data (shot gathers) from Martha's Vineyard, and seismic data (shot gathers) from Nantucket. This work was supported by the National Science Foundation (NSF Award 2052794). Technical support was provided by Geophysical Technology, Inc. (https://geophysicaltechnology.com/), Exploration Instruments (https://www.exiusa.com/) , and Seismic Source (https://seismicsource.com/). Field work in Manuel F. Correllus State Forest was conducted with the approval of the Massachusetts Department of Conservation and Recreation under Research Access Permit #R-209. Daniel Wright and Conor Laffey of the Massachusetts Department of Conservation and Recreation provided local logistical support on Martha’s Vineyard. Field work on Nantucket was conducted with the approval of Wannacommet Water Company. Mark Willett of Wannacommet water company provided local logistical support on Nantucket.
DOI: 10.21227/a511-aa37
title: coco names

description: The dataset comprises diverse objects detectable by drones during aerial surveys, encapsulating an extensive array of environmental and man-made elements. Encompassing natural entities like trees, water bodies, terrain features, and vegetation, it also incorporates urban objects such as buildings, roads, vehicles, and infrastructure. The dataset delineates distinct categories, encompassing fine-grained details within each classification, catering to the nuances of aerial detection. It offers a comprehensive spectrum of shapes, sizes, orientations, and environmental contexts, simulating real-world scenarios encountered during drone missions. Rich in diversity, this dataset facilitates training and evaluation of object detection algorithms, enabling drones to discern and classify multifarious objects within their operational landscapes, advancing their precision and adaptability in various applications like environmental monitoring, urban planning, disaster management, and more.
DOI: 10.21227/6e56-4e15
title: SaudiShopInsights Dataset: Saudi Customer Reviews in Clothes and Electronics

description: The SaudiShopInsights dataset is a comprehensive collection of customer reviews in the Arabic language, specifically focusing on the Saudi dialect, within the domains of fashion and electronics. Gathered from various online platforms, this dataset serves as a valuable resource for researchers and practitioners interested in sentiment analysis, natural language processing, and customer behavior studies. The dataset encompasses a diverse range of opinions, sentiments, and preferences expressed by consumers, providing insights into their experiences with products and services in the clothing and electronics sectors. Researchers can leverage this dataset to develop and enhance models for sentiment analysis, customer feedback analysis, and other applications in the domain of Arabic language processing. The SaudiShopInsights dataset offers a unique perspective on consumer sentiments, contributing to a deeper understanding of market trends and enabling advancements in customer-centric analytics.
DOI: 10.6073/pasta/627112b3481c2aeed4f60523cc8466b6
title: Monthly monitoring fluorescence data for Shark River Slough and Taylor Slough, Everglades National Park, Florida, USA (FCE LTER) for 2012 - 2020

description: Dissolved organic matter plays an important role in biogeochemical processes in aquatic environments such as elemental cycling, microbial loop energetics, and the transport of materials across landscapes. Since most of N (&gt; 90%) and P (around 90%) is in the organic form in the oligotrophic subtropical Florida Coastal Everglades (FCE), study of the source and dynamics of dissolved organic matter (DOM) in the ecosystem is crucial for the better understanding of the biogeochemical cycling of nutrients. FCE are composed of estuaries with distinct regions with different biogeochemical processes. Freshwater marsh primarily receives terrestrial input and local autochthonous vegetation production. Mangrove ecotone, nevertheless, is affected by the tidal contributions from Florida Bay and local mangrove production. Florida Bay (FB) is a wedge-shaped shallow oligotrophic estuary which lays south of the Everglades, the bottom of which is covered with a dense biomass of seagrass. The sources of both freshwater and nutrients in FCE are difficult to quantify, owing to the non-point source nature of runoff from the Everglades and the dendritic cross channels in the mangroves. Furthermore, the combination of multiple DOM sources (freshwater marsh vegetation, mangroves, phytoplankton, seagrass, etc.), and the potential seasonal variability of their relative contribution, along with the history of (photo)chemical and microbial diagenetic processing, and complex advective circulation, makes the study of DOM dynamics in FCE particularly difficult using standard schemes of estuarine ecology. Quantitative information of DOM is very useful to investigate the biogeochemical cycling of DOM to a certain degree, however, qualitative information is necessary to better understand the source and dynamics of DOM. Since fluorescence spectroscopic techniques are very sensitive, quick and simple, they have been applied to investigate the fate of DOM in estuaries.Monthly fluorescence monitoring data in this data package are superseded by those in package knb-lter-fce.1256.3 (https://doi.org/10.6073/pasta/7645f98091e4b070635b8587f1bceceb). Additional monthly monitoring fluorescence data (covering 2004-2014) from FCE are available in package knb-lter-fce.1174.7 (https://doi.org/10.6073/pasta/3938d3bb664d57584afc749c6a768f31) but are not interoperable with fluorescence data provided in this package.
DOI: 10.25345/c5p84465r
title: MassIVE MSV000093695 - Synthetic confirmation of bile acid-amine conjugates from 'Microbially-catalyzed conjugation of GABA and tyramine to bile acids'
title: UPLC-MS/MS data used to confirm the retention times of bile acid conjugates to GABA and tyramine that were detected in microbial culture and human fecal samples. Synthesized conjugates included here are GABA-deoxycholic acid, tyramine-deoxycholic acid, GABA-cholic acid, tyramine-cholic acid, GABA-chenodeoxycholic acid, and tyramine-chenodeoxycholic acid. Data of biological samples (B. fragilis P207 spiked with DCA, healthy human donor 11 feces, patient 207 v12 feces) from the same UPLCMS/MS sequence is included for comparison and validation. All using positive ionization.
DOI: 10.25919/w2p5-9b02
title: Parkes observations for project P1226 semester 2023OCTS_05

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.25919/yaag-9y02
title: Parkes observations for project P1226 semester 2023OCTS_06

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.25919/f8xp-0d44
title: Parkes observations for project P1226 semester 2023OCTS_08

description: Fast Radio Bursts(FRBs) are often proposed as useful cosmological probes, however much work is needed to better understand the foreground environment that it propgates through, such as the Galactic ISM and Milky Way Halo. We propose to observe three satellite dwarf spheroidal galaxies of the Milky Way to search for FRBs and pulsars. We plan to take advantage of the new CryoPAF's wide field of view to survey high stellar density dwarf satellite galaxies with substantial angular sizes: Fornax, Sculptor and Sagittarius II. Detections of FRBs and pulsars will allow us to measure the Circumgalactic Medium contribution to FRB dispersion and also the dark matter halos of these dwarf galaxies.
DOI: 10.6084/m9.figshare.24025728.v2
title: SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects

description: SAFE-<i>h</i><sup>2 </sup>is developed under an academic research study to provide proper estimates of SNP heritability. For this, SAFE-<i>h</i><sup>2 </sup>creates heritability profiles to prevent SNPs with illogical negative contributions to heritability. It also minimizes the contributions by false-positive SNP hits. Finally, SAFE-<i>h</i><sup>2</sup> can perform a joint analysis on both additive and non-additive allelic effects. Therefore, it also provides the chance for GWASs to perform linear association tests while capturing both additive and non-additive effects.<b>Software Availability:</b> SAFE-<i>h</i><sup>2 </sup>(SNP Allocation For Estimating Heritability)<b> </b>contains the compiled SAFE-<i>h</i><sup>2</sup> scripts with related installation and usage manual (Download link: https://github.com/SAFE-h2/SAFE-h2).Read the related research article “<b>SNP Allocation For Estimating Heritability (SAFE-</b><b><i>h</i></b><sup><strong>2</strong></sup><b>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects” (doi:</b> https://doi.org/10.1101/2023.08.28.555092<b>)</b> for the full study and descriptions.<b>Citation: </b><i>Behrooz Darbani, Mogens Nicolaisen. </i>SNP Allocation For Estimating Heritability (SAFE-<i>h</i><sup>2</sup>): A tool to explore genomic origins of phenotypes for estimation of SNP heritability using additive-only allelic effects or additive and non-additive allelic effects. doi: https://doi.org/10.1101/2023.08.28.555092<b>Contact: behroozdarbani@gmail.com, bd@agro.au.dk</b>Department of Agroecology, Faculty of Technical Sciences, Aarhus University, Slagelse, Denmark
DOI: 10.5281/zenodo.10232165
title: ENCODE LR-RNA-seq TSS BED files

description: Included are lapa (files just end in .bed) and Cerberus (files end in _cerberus.bed) TSSs for GM12878 and K562 libraries. Also included is a metadata file that goes from experiment ID to dataset name.

 

Lapa TSSs have been filtered for reproducibility between biological replicates

 

Cerberus TSSs are comprised of a subset of Lapa TSSs and have been filtered for expression >= 1 TPM.

 

* Updated 12/19/23 for recompute
DOI: 10.5281/zenodo.10232166
title: ENCODE LR-RNA-seq TSS BED files

description: Included are lapa (files just end in .bed) and Cerberus (files end in _cerberus.bed) TSSs for GM12878 and K562 libraries. Also included is a metadata file that goes from experiment ID to dataset name.
 
Lapa TSSs have been filtered for reproducibility between biological replicates
 
Cerberus TSSs are comprised of a subset of Lapa TSSs and have been filtered for expression >= 1 TPM.
DOI: 10.5281/zenodo.10266911
title: ENCODE LR-RNA-seq TSS BED files

description: Included are lapa (files just end in .bed) and Cerberus (files end in _cerberus.bed) TSSs for GM12878 and K562 libraries. Also included is a metadata file that goes from experiment ID to dataset name.
 
Lapa TSSs have been filtered for reproducibility between biological replicates
 
Cerberus TSSs are comprised of a subset of Lapa TSSs and have been filtered for expression >= 1 TPM.
DOI: 10.5281/zenodo.10407846
title: ENCODE LR-RNA-seq TSS BED files

description: Included are lapa (files just end in .bed) and Cerberus (files end in _cerberus.bed) TSSs for GM12878 and K562 libraries. Also included is a metadata file that goes from experiment ID to dataset name.

 

Lapa TSSs have been filtered for reproducibility between biological replicates

 

Cerberus TSSs are comprised of a subset of Lapa TSSs and have been filtered for expression >= 1 TPM.

 

* Updated 12/19/23 for recompute
DOI: 10.5281/zenodo.10407780
title: Processed data to accompany "Clonally heritable gene expression imparts a layer of diversity within cell types"

description: This is the processed data underlying the paper "Clonally heritable gene expression imparts a layer of diversity within cell types" by Mold, Weissman, et al.  Data has been gone through preprocessing steps, using the Python Notebooks found at https://github.com/MartyWeissman/ClonalOmics/tree/main/Data.  

Smaller files are provided in .csv (comma-separated-value) format and larger files such as expression matrices are provided in .loom format (using the AnnData package).
DOI: 10.5281/zenodo.10407781
title: Processed data to accompany "Clonally heritable gene expression imparts a layer of diversity within cell types"

description: This is the processed data underlying the paper "Clonally heritable gene expression imparts a layer of diversity within cell types" by Mold, Weissman, et al.  Data has been gone through preprocessing steps, using the Python Notebooks found at https://github.com/MartyWeissman/ClonalOmics/tree/main/Data.  

Smaller files are provided in .csv (comma-separated-value) format and larger files such as expression matrices are provided in .loom format (using the AnnData package).
DOI: 10.5281/zenodo.10407857
title: DNA_test_129_Preprocessing_using_AlphaFold2
DOI: 10.5281/zenodo.10407858
title: DNA_test_129_Preprocessing_using_AlphaFold2
DOI: 10.5517/ccdc.csd.cc21183h
title: CCDC 1878045: Experimental Crystal Structure Determination

description: Related Article: Thomas W. Price, Laurène Wagner, Veronika Rosecker, Jana Havlíčková, Timothy J. Prior, Vojtěch Kubíček, Petr Hermann, Graeme J. Stasiuk|2023|Inorg.Chem.|62|20769|doi:10.1021/acs.inorgchem.3c02459
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7241423
title: salary_data_analist
DOI: 10.6084/m9.figshare.24871344
title: museological objects representation_491 records

description: The dataset include 491 records on museological objects representation from the Web of Science Core Collection retrieved date: 10/10/2023.
DOI: 10.6084/m9.figshare.24871344.v1
title: museological objects representation_491 records

description: The dataset include 491 records on museological objects representation from the Web of Science Core Collection retrieved date: 10/10/2023.
DOI: 10.25345/c5jh3dd1m
title: MassIVE MSV000093696 - Glioblastoma Extracellular Vesicles Modulate Immune PD-L1 Expression in Accessory Macrophages upon Radiotherapy
title: The aim of the study was to investigate the effects of ionizing radiation on CT-2A cells at the protein level, proteomics analyses were performed on CT-2A cells irradiated with 5 Gy. To investigate the effect of glioma-secreted extracellular vesicles (EVs) on bone-marrow-derived macrophages (BMDM) at the protein level, BMDM were exposed to EVs for 48 hours. Multiplexed mass spectrometry-based proteomics was performed using TMTpro barcoding reagents and the SPS-MS3 method on an Orbitrap Lumos mass spectrometer. Samples were labeled as follows: CT-2A CTRL samples: CT2A_Cells_CTRL_1 (126), CT2A_Cells_CTRL_2 (127n) CT-2A IR samples: CT2A_Cells_IR_1 (127c), CT2A_Cells_IR_2 (128n) BMDM samples: Macrophage_CTRL_1 (128c), Macrophage_CTRL_2 (129n) BMDM+EV samples: Macrophage_Plus_EV_1 (130c), Macrophage_Plus_EV_2 (131n) BMDM+irEV samples: Macrophage_Plus_irEV_1 (131c), Macrophage_Plus_irEV_2 (132n)