cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7937831
title: Phylogenetic analysis and virulence determinant of the host-adapted <i>Staphylococcus aureus</i> lineage ST188 in China

description: <i>Staphylococcus aureus</i> (<i>S. aureus</i>) is an important pathogen of humans and livestock species, but an understanding of the clonal distribution of <i>S. aureus</i> causing different host-species infections in the same geographical environment and within the same period is lacking. By characterizing infections caused by <i>S. aureus</i> in bovine, pediatric, and adult patients in Shanghai, China, between 2012 and 2014, we identified methicillin-sensitive <i>S. aureus</i> (MSSA) ST188 as the major lineage causing infections in multiple host species. Whole-genome sequencing and phenotypic analyses demonstrated that ST188 might evolve from livestock, and there was no significant genomic or virulence difference between ST188 isolated from livestock and humans. The virulence of ST188 is related to its adhesion and nasal colonization ability. This result is in accord with the strong epithelial cell adhesion and biofilm formation properties of ST188. Furthermore, the adhesion- and biofilm-formation-related genes are present in multiple copies and exhibit significantly increased expression in ST188. In conclusion, <i>S. aureus</i> ST188 is the major lineage causing human and livestock infections in Shanghai, China. Due to its high expression of the factors associated with bacterial adhesion and biofilm formation, ST188 has the ability to colonize and infect different host species.
DOI: 10.15468/dl.62qabw
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Nannofossil abundance of Hole 67-499B"
 ]
}

 The dataset includes 159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030120-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.7937084.v1
title: Comparison of the pathogenic potential of highly pathogenic avian influenza (HPAI) H5N6, and H5N8 viruses isolated in South Korea during the 2016–2017 winter season

description: Highly pathogenic avian influenza (HPAI) A(H5N6) and A(H5N8) virus infections resulted in the culling of more than 37 million poultry in the Republic of Korea during the 2016/17 winter season. Here we characterize two representative viruses, A/Environment/Korea/W541/2016 [Em/W541(H5N6)] and A/Common Teal/Korea/W555/2017 [CT/W555(H5N8)], and evaluate their zoonotic potential in various animal models. Both Em/W541(H5N6) and CT /W555(H5N8) are novel reassortants derived from various gene pools of wild bird viruses present in migratory waterfowl arising from eastern China. Despite strong preferential binding to avian virus–type receptors, the viruses were able to grow in human respiratory tract tissues. Em/W541(H5N6) was found to be highly pathogenic in both chickens and ducks, while CT/W555(H5N8) caused lethal infections in chickens but did not induce remarkable clinical illness in ducks. In mice, both viruses appeared to be moderately pathogenic and displayed limited tissue tropism relative to HPAI H5N1 viruses. Em/W541(H5N6) replicated to moderate levels in the upper respiratory tract of ferrets and was detected in the lungs, brain, spleen, liver, and colon. Unexpectedly, two of three ferrets in direct contact with Em/W541(H5N6)-infected animals shed virus and seroconverted at 14 dpi. CT/W555(H5N8) was less pathogenic than the H5N6 virus in ferrets and no transmission was detected. Given the co-circulation of different, phenotypically distinct, subtypes of HPAI H5Nx viruses for the first time in South Korea, detailed virologic investigations are imperative given the capacity of these viruses to evolve and cause human infections.
DOI: 10.6084/m9.figshare.7937831.v1
title: Phylogenetic analysis and virulence determinant of the host-adapted <i>Staphylococcus aureus</i> lineage ST188 in China

description: <i>Staphylococcus aureus</i> (<i>S. aureus</i>) is an important pathogen of humans and livestock species, but an understanding of the clonal distribution of <i>S. aureus</i> causing different host-species infections in the same geographical environment and within the same period is lacking. By characterizing infections caused by <i>S. aureus</i> in bovine, pediatric, and adult patients in Shanghai, China, between 2012 and 2014, we identified methicillin-sensitive <i>S. aureus</i> (MSSA) ST188 as the major lineage causing infections in multiple host species. Whole-genome sequencing and phenotypic analyses demonstrated that ST188 might evolve from livestock, and there was no significant genomic or virulence difference between ST188 isolated from livestock and humans. The virulence of ST188 is related to its adhesion and nasal colonization ability. This result is in accord with the strong epithelial cell adhesion and biofilm formation properties of ST188. Furthermore, the adhesion- and biofilm-formation-related genes are present in multiple copies and exhibit significantly increased expression in ST188. In conclusion, <i>S. aureus</i> ST188 is the major lineage causing human and livestock infections in Shanghai, China. Due to its high expression of the factors associated with bacterial adhesion and biofilm formation, ST188 has the ability to colonize and infect different host species.
DOI: 10.6084/m9.figshare.7937834
title: Identification of tell-tale patterns in the 3′ non-coding region of hantaviruses that distinguish HCPS-causing hantaviruses from HFRS-causing hantaviruses

description: Identification of tell-tale patterns in the 3′ non-coding region of hantaviruses that distinguish HCPS-causing hantaviruses from HFRS-causing hantaviruses
DOI: 10.6084/m9.figshare.7937834.v1
title: Identification of tell-tale patterns in the 3′ non-coding region of hantaviruses that distinguish HCPS-causing hantaviruses from HFRS-causing hantaviruses

description: Identification of tell-tale patterns in the 3′ non-coding region of hantaviruses that distinguish HCPS-causing hantaviruses from HFRS-causing hantaviruses
DOI: 10.15468/dl.ygdkyh
title: Occurrence Download

description: A dataset containing 8264 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-86.7945763999999969 33.4904014000000032, -86.7945763999999969 33.4941413299999979, -86.7945763999999969 33.4998612300000005, -86.7945763999999969 33.5049211400000004, -86.7945763999999969 33.5095410500000028, -86.7945763999999969 33.5124009999999970, -86.7917114300000065 33.5124009999999970, -86.7873031299999980 33.5124009999999970, -86.7839969099999990 33.5124009999999970, -86.7798090200000019 33.5124009999999970, -86.7742986500000058 33.5124009999999970, -86.7685678699999983 33.5124009999999970, -86.7654820599999965 33.5124009999999970, -86.7606329299999999 33.5124009999999970, -86.7568863000000050 33.5124009999999970, -86.7568863000000050 33.5082210799999984, -86.7568863000000050 33.5036011600000023, -86.7568863000000050 33.4981012599999985, -86.7568863000000050 33.4941413299999979, -86.7568863000000050 33.4904014000000032, -86.7623962499999948 33.4904014000000032, -86.7652616499999993 33.4904014000000032, -86.7692291099999977 33.4904014000000032, -86.7742986500000058 33.4904014000000032, -86.7795886100000047 33.4904014000000032, -86.7831152499999945 33.4904014000000032, -86.7864214699999934 33.4904014000000032, -86.7912706000000043 33.4904014000000032, -86.7945763999999969 33.4904014000000032))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 8264 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073442-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64196
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.6084/m9.figshare.7937807
title: Wild birds in Chile Harbor diverse avian influenza A viruses

description: While the circulation of avian influenza viruses (IAV) in wild birds in the northern hemisphere has been well documented, data from South America remain sparse. To address this gap in knowledge, we undertook IAV surveillance in wild birds in parts of Central and Northern Chile between 2012 and 2015. A wide diversity of hemagglutinin (HA) and neuraminidase (NA) subtypes were identified and 16 viruses were isolated including low pathogenic H5 and H7 strains, making this the largest and most diverse collection of Chilean avian IAVs to date. Unlike IAVs isolated from wild birds in other South American countries where the genes were most like viruses isolated from wild birds in either North America or South America, the Chilean viruses were reassortants containing genes like viruses isolated from both continents. In summary, our studies demonstrate that genetically diverse avian IAVs are circulating in wild birds in Chile highlighting the need for further investigation in this understudied area of the world.
DOI: 10.6084/m9.figshare.7937807.v2
title: Wild birds in Chile Harbor diverse avian influenza A viruses

description: While the circulation of avian influenza viruses (IAV) in wild birds in the northern hemisphere has been well documented, data from South America remain sparse. To address this gap in knowledge, we undertook IAV surveillance in wild birds in parts of Central and Northern Chile between 2012 and 2015. A wide diversity of hemagglutinin (HA) and neuraminidase (NA) subtypes were identified and 16 viruses were isolated including low pathogenic H5 and H7 strains, making this the largest and most diverse collection of Chilean avian IAVs to date. Unlike IAVs isolated from wild birds in other South American countries where the genes were most like viruses isolated from wild birds in either North America or South America, the Chilean viruses were reassortants containing genes like viruses isolated from both continents. In summary, our studies demonstrate that genetically diverse avian IAVs are circulating in wild birds in Chile highlighting the need for further investigation in this understudied area of the world.
DOI: 10.6084/m9.figshare.7936898.v1
title: Comparison of the virulence and transmissibility of canine H3N2 influenza viruses and characterization of their canine adaptation factors

description: Recent canine influenza outbreaks have raised concerns about the generation of pathogenic variants that may pose a threat to public health. Here, we examine avian-like H3N2 canine influenza viruses (CIVs) isolated from 2009 to 2013 in South Korea from dogs. Phylogenetic analysis revealed that these viruses are closely related to strains previously isolated from dogs in Korea and China. However, molecular characterization demonstrated non-synonymous mutations between the canine viruses, particularly in the putative H3 antigenic sites, NA stalk regions, and in the internal genes of the 2012–2013 isolates compared with the 2009 isolate. Animal experiments showed that three representative isolates (A/canine/Korea/AS-01/2009(AS-01/09), A/canine/Korea/AS-05/2012(AS-05/12) and A/canine/Korea/AS-11/2013(AS-11/13), were readily droplet transmitted between dogs, whereas AS-05/12 induced more severe clinical disease and was lethal in dogs compared with AS-01/09. Although all viruses were able to infect ferrets, AS-05/12 consistently yielded higher nasal wash titers and was transmissible to ferrets via airborne droplets. Using reverse genetics, we show that the NA, NP, and M genes of CIV are critical for the adaptation of avian H3N2 viruses, and the resulting reassortant genotypes promote viral growth in dogs in a manner similar to that of the wild-type AS-01/09 virus. Taken together, these results demonstrate that CIVs continuously evolve in dogs thereby allowing them to gain a foothold in mammalian hosts. Importantly, we elucidated the genetic contributions of the NA, NP, and M genes to the adaptability of CIVs derived from the avian H3N2 virus.
DOI: 10.6084/m9.figshare.7937807.v1
title: Wild birds in Chile Harbor diverse avian influenza A viruses

description: While the circulation of avian influenza viruses (IAV) in wild birds in the northern hemisphere has been well documented, data from South America remain sparse. To address this gap in knowledge, we undertook IAV surveillance in wild birds in parts of Central and Northern Chile between 2012 and 2015. A wide diversity of hemagglutinin (HA) and neuraminidase (NA) subtypes were identified and 16 viruses were isolated including low pathogenic H5 and H7 strains, making this the largest and most diverse collection of Chilean avian IAVs to date. Unlike IAVs isolated from wild birds in other South American countries where the genes were most like viruses isolated from wild birds in either North America or South America, the Chilean viruses were reassortants containing genes like viruses isolated from both continents. In summary, our studies demonstrate that genetically diverse avian IAVs are circulating in wild birds in Chile highlighting the need for further investigation in this understudied area of the world.
DOI: 10.6084/m9.figshare.7936898
title: Comparison of the virulence and transmissibility of canine H3N2 influenza viruses and characterization of their canine adaptation factors

description: Recent canine influenza outbreaks have raised concerns about the generation of pathogenic variants that may pose a threat to public health. Here, we examine avian-like H3N2 canine influenza viruses (CIVs) isolated from 2009 to 2013 in South Korea from dogs. Phylogenetic analysis revealed that these viruses are closely related to strains previously isolated from dogs in Korea and China. However, molecular characterization demonstrated non-synonymous mutations between the canine viruses, particularly in the putative H3 antigenic sites, NA stalk regions, and in the internal genes of the 2012–2013 isolates compared with the 2009 isolate. Animal experiments showed that three representative isolates (A/canine/Korea/AS-01/2009(AS-01/09), A/canine/Korea/AS-05/2012(AS-05/12) and A/canine/Korea/AS-11/2013(AS-11/13), were readily droplet transmitted between dogs, whereas AS-05/12 induced more severe clinical disease and was lethal in dogs compared with AS-01/09. Although all viruses were able to infect ferrets, AS-05/12 consistently yielded higher nasal wash titers and was transmissible to ferrets via airborne droplets. Using reverse genetics, we show that the NA, NP, and M genes of CIV are critical for the adaptation of avian H3N2 viruses, and the resulting reassortant genotypes promote viral growth in dogs in a manner similar to that of the wild-type AS-01/09 virus. Taken together, these results demonstrate that CIVs continuously evolve in dogs thereby allowing them to gain a foothold in mammalian hosts. Importantly, we elucidated the genetic contributions of the NA, NP, and M genes to the adaptability of CIVs derived from the avian H3N2 virus.
DOI: 10.15468/dl.35sc8q
title: Occurrence Download

description: A dataset containing 302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-9.05391 41.51667,-7.87932 41.51667,-7.87932 42.26424,-9.05391 42.26424,-9.05391 41.51667))",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus suber L."
 ]
}

 The dataset includes 302 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030323-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64342
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.hvl19s
title: Occurrence Download

description: A dataset containing 118277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guyana",
 "HasCoordinate is true",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 118277 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002822-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kktqvx
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Decatopecten amiculum (R.A.Philippi, 1851)"
 ]
}

 The dataset includes 148 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106008-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64160
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.tegmj7
title: Occurrence Download

description: A dataset containing 320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Prosopis nigra (Griseb.) Hieron."
 ]
}

 The dataset includes 320 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0127109-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2zecpe
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionCode is usnm",
 "TaxonKey is Panthera onca (Linnaeus, 1758)"
 ]
}

 The dataset includes 118 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002822-180925134338326/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8v9qnr
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellastra cochlear (Born, 1778)"
 ]
}

 The dataset includes 484 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098554-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64344
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.psdrr4
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phlomoides ruptilis (C.Y.Wu) Kamelin & Makhm."
 ]
}

 The dataset includes 11 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075114-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64200
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.nnntun
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zamia urep B.Walln."
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002822-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5tv4d
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corchorus pseudocapsularis Schweinf.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073462-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eug4rz
title: Occurrence Download

description: A dataset containing 1453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Italy",
 "TaxonKey is Euplagia quadripunctaria (Poda, 1761)",
 "Year is greater than or equal to 2013"
 ]
}

 The dataset includes 1453 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085970-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-64208
title: Redemption tidings, vol. 44, nos. 1-52, 4 Jan. - 26 Dec. 1968

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.v7vzvm
title: Occurrence Download

description: A dataset containing 35970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ara macao (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35970 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002822-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vtbf5x
title: Occurrence Download

description: A dataset containing 3173 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellastra flexuosa (Quoy & Gaimard, 1834)"
 ]
}

 The dataset includes 3173 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098557-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-67140
title: Redemption tidings, vol. 47, nos. 1-46, 7 Jan. - 30 Dec. 1971

description: [description english/roman)] Issued weekly.
DOI: 10.15468/dl.9f5ea5
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleurothallis crescentilabia Ames"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085940-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.