cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.j850j/3
title: Residual hormone data  fig2

description: This data file contains four tables that each give for each rank the residuals of log-transformed hormone concentration (glucocorticoids and testosterone) obtained from a GLMM (separate for each hormone) that included age and environmental factors as fixed factors, and male identity as a random factor. Each row represents a month-year value for a single male. A different dataset was used for each table as follows. For tables 'All ranks_Stable' and 'All ranks_Unstable' the associated GLMM model used data for males of all ranks but only during months for which the hierarchy was 'stable' or 'unstable' respectively. For tables 'Rank 1&2_Stable' and 'Rank 1&2_Unstable', which provide the data for the Fig.2 inserts, the associated GLMM model used data only for alpha and beta males and only during months for which the hierarchy was 'stable' or 'unstable’ respectively. Details of the analysis can be found in the publication.
DOI: 10.5061/dryad.rk280/1
title: Single-locus heterozygosity of all individuals

description: Heterozygosity information is given as homozygote (0) or heterozygote (1) for all loci. Loci names see publication, table 1.
DOI: 10.5061/dryad.rn1ns/1
title: Birth timing data of wild boar
DOI: 10.5061/dryad.574r7/1
title: Crean et al_Evolution Manuscript 10-0819_data for archiving
DOI: 10.5061/dryad.5k9s0/1
title: oaks2011_crocodylia

description: Multi-locus alignment of DNA sequences from 79 crocodylians in nexus format.  Gene regions are specified as character sets.
DOI: 10.5061/dryad.8729/6
title: csv files for Fig. 3

description: The same as in "origin .obj files for Fig. 3.rar".
DOI: 10.5061/dryad.964/5
title: Supplementary Table 5
DOI: 10.5061/dryad.972/1
title: Supplementary Table 1
DOI: 10.5061/dryad.972/2
title: Supplementary Table 2
DOI: 10.5061/dryad.972/3
title: Supplementary Table 3
DOI: 10.5061/dryad.972/4
title: Supplementary Table 4
DOI: 10.5061/dryad.979/1
title: asp-1C Data Set
DOI: 10.5061/dryad.979/2
title: asp-1D Data Set
DOI: 10.5061/dryad.979/3
title: asp-1E Data Set
DOI: 10.5061/dryad.979/4
title: Cox Data Set
DOI: 10.5061/dryad.986/1
title: Appendix 1.xls
DOI: 10.5061/dryad.n3373/1
title: Samples, methods and supporting analyses
DOI: 10.5061/dryad.rk280/2
title: Clutch sizes of all females and breeding seasons

description: Clutch sizes (no. of eggs) per female and breeding season are listed. Age of the female is coded as 1 (one year old) or 2 (two or more years old).
DOI: 10.5061/dryad.rk280/3
title: Sired eggs of all males and breeding seasons

description: Number sired eggs per male and breeding season is listed. Age of the male is coded as 1 (one year old) or 2 (two or more years old).
DOI: 10.5061/dryad.rk280/4
title: Reproductive success of each nest (breeding pair)

description: Reproductive success information per nest is given as clutch size, no. of hatchlings, no. of fledglings and no. of recruits to the next breeding season. Age is coded as 1 (one year old) or 2 (two or more years old).
DOI: 10.5061/dryad.rn6gg/1
title: RIL RTPCR and CHC data

description: qRT-PCR data for three genes (AmyPres CL481res NinaDres) and cuticular hydrocarbons (lc1 lc2 lc3 lc5 lc6 lc7 lc8 lc9) for 430 individuals from 41 RILs and 2 parental lines (EUNGC and FORS4). Canonical variates for genes (V1, V2, V3) and CHCs (W1, W2, W3) are also given.
DOI: 10.5061/dryad.rn6gg/2
title: 15 RIL CHC and gene factor means

description: RIL line means for 12 genetic factors and 9 cuticular hydrocarbons for the line-mean analysis presented in Table 2.
DOI: 10.5061/dryad.12d23/1
title: appendix_2

description: Raw data concerning the timing of migration in breeding North American birds
DOI: 10.5061/dryad.5f8s2/1
title: Brook Trout Microsatellite and Spatial Locations

description: Eight microsatellite loci for 473 individuals in Jefferson Hill-Spruce Brook and 267 individuals in Kent Falls Brook. GIS shapefiles show detailed locations of brook trout in the two streams.
DOI: 10.5061/dryad.80n50/2
title: Appendix II

description: Phylogenies of Ruminantia and its subfamilies (Hernández Fernández and Vrba 2005a) and the oldest fossil record for each branch (red spots). Numbers of nodes and branches match those in Appendix I. Red numbers, number of branches. Blue numbers, numbers of nodes.
DOI: 10.5061/dryad.80n50/3
title: Appendix I

description: Calculations of the Ghost Lineage Percentages for every branch of the supertree of Ruminantia. Age of Nodes and their numeration were taken from Hernández Fernández and Vrba (2005a).  Number of branches according to figures in Appendix 2.
DOI: 10.5061/dryad.8p425/1
title: Failed probe sequences for Dryad

description: These are the oligonucleotide probe sequences (designed using Primer BLAST available through the NCBI website) for the 33 fish species included in this study. Using nucleotide BLAST in NCBI, these probe sequences were found to match non-target species in the GenBank database and were thus discarded and not utilized further in the study.
DOI: 10.5061/dryad.994/1
title: Morphometric Dataset
DOI: 10.5061/dryad.994/2
title: Supplementary Figure 1

description: Map of Mexico and Central America showing generalized localities 1-10 of the accessions examined in this study.
DOI: 10.5061/dryad.994/3
title: Supplementary Figure 2

description: Map of Northwestern South America showing generalized localities 11-33 of the accessions examined in this study.
DOI: 10.5061/dryad.994/4
title: Supplementary Figure 3

description: Map of Peru and Northern Bolivia showing generalized localities 34-45 of the accessions examined in this study.
DOI: 10.5061/dryad.994/5
title: Supplementary Figure 4

description: Means, ranges, and one standard deviation of the mean for eight of the 40 morphological characters determined by Stepwise Descriminant Analysis to descriminate members of ser. Conicibaccata
DOI: 10.5061/dryad.994/6
title: Supplementary Figure 5

description: Canonical Descriminant Analysis (excluding the outliers S. contumazaense, S. longiconicum, and S. trinitense) using just the 28 normally distributed morphological characters of members of ser. Conicibaccata and Piurana and 35 normally distributed morphological characters of only members of ser. Conicibaccata
DOI: 10.5061/dryad.994/7
title: Supplementary Figure 6

description: Principal Coordinate Analyses based on 72 morphological characters of members of ser. Conicibaccata and ser. Piurana, and ser. Conicibaccata alone examined in this study using Gower's extended coefficient.
DOI: 10.5061/dryad.994/8
title: Supplementary Figure 7

description: Means, ranges, and one standard deviation of the mean for five of the 17 morphological characters determined by Stepwise Character Analysis to discriminate diploid from polyploid members of ser. Conicibaccata.
DOI: 10.5061/dryad.c10q7/1
title: JEB-2011-00053.R1

description: Contains phenotypic and genotypic data of both parental strains (C13, O66) and the four reciprocal F2 crosses (F2AA, F2AB, F2BA, F2BB). Information on individual microsatellite alleles segregating within strains is also given.
DOI: 10.5061/dryad.1888/1
title: NicSolstatus.csv

description: Breeding system data for species used in the analyses. See included text file for explanation.
DOI: 10.5061/dryad.1888/2
title: NicSolPLML.tre

description: Rate-smoothed ML tree of 356 Solanaceae species.
DOI: 10.5061/dryad.8038/1
title: Orozco-terWengel_data

description: Microsatellite data for 21 natural populations of Drosophila melanogaster. The file is in MSA format (Dieringer D, Schlötterer C (2003) Microsatellite Analyser (Msa): A Platform Independent Analysis Tool for Large Microsatellite Data Sets. Molecular Ecology Notes 3, 167-169).
DOI: 10.5061/dryad.8743/1
title: Coupling endogenous and exogenous selection
DOI: 10.5061/dryad.8754/1
title: Toxicity and induction data

description: Includes raw data of toxicity and induction experiments mentioned in the manuscript. For more information refer to the ReadMe file.
DOI: 10.5061/dryad.8754/2
title: Glycan array TAP1 and XCL

description: Contains raw data for the Glycan array analysis of the lectins TAP1 and XCL. Files are also available at the Consortium for Functional Glycomics (CFG) http://www.functionalglycomics.org/static/consortium/resources/resourcecoreh.shtml
DOI: 10.5061/dryad.994/9
title: Supplementary Figure 8

description: Means, ranges, and one standard deviation of the mean for five of the 17 morphological characters determined by Stepwise Discriminant Analysis to discriminate members of ser. Conicibaccata from members of ser. Piurana
DOI: 10.5061/dryad.7944/1
title: TreeBASE S10954 - Concatenated matrix of four molecular loci for Ophiostoma montium

description: Treebase file containing a concatenated matrix of four nuclear loci for Ophiostoma montium: beta tubulin, elongation factor 1 alpha, actin, and ITS2+28S. Data is provided in a NEXUS format with character blocks representing each locus.
DOI: 10.5061/dryad.8343/8
title: alignment for Ceanothus

description: also contains habitat states and maximum clade credibility tree
DOI: 10.5061/dryad.8343/9
title: BEAST input file for Arctostaphylos
DOI: 10.5061/dryad.8444/1
title: MEC-10-1217.R1_data

description: Zipped folder containing 126 data files formatted for the program IMa2 as well as a README file explaining data file organization. All data were simulated using the program MS.
DOI: 10.5061/dryad.8596/1
title: con_ens

description: C code for the simulation data (constrained ensemble simulations). For random number generations, ran3.c and bnldev.c from "Numerical Recipes in C" are used (these codes are not deposited in Dryad).
DOI: 10.5061/dryad.8596/2
title: time

description: auxiliary file which is necessary to run the code con_ens.c.
DOI: 10.5061/dryad.gn1v3/4
title: C_megar_nDNA_Arlequin

description: Input file used for analysis in Arlequin.
DOI: 10.5061/dryad.gn1v3/5
title: C_megar_mtDNA_network

description: Input file used for estimating haplotype network.
DOI: 10.5061/dryad.gn1v3/6
title: C_megar_nDNA_network

description: Input file used for estimating the nuclear allele network.
DOI: 10.5061/dryad.j850j/1
title: Raw hormone data

description: This data file contains the monthly average hormones values for glucocorticoids (GC) and testosterone (T), for each of the 127 adult male baboons, used in the analyses for this article.
DOI: 10.5061/dryad.j850j/2
title: Residual hormone data  fig1

description: This data file gives for each rank the residuals of log-transformed hormone concentration (glucocorticoids and testosterone) obtained from a GLMM (for that hormone) that included age, environmental factors and hierarchy stability as fixed factors, male identity as a random factor. Each row represents a month-year value for a single male. Details on the analysis can be found in the publication.
DOI: 10.5061/dryad.8416/3
title: SpecimenData

description: Voucher info, Taxonomy, Specimen Details and Collection Data of the fishes collected in Taal Lake, Philippines
DOI: 10.5061/dryad.8416/5
title: consensus sequences

description: Consensus sequences of the COI barcodes of the fishes collected in Taal Lake, Philippines
DOI: 10.5061/dryad.8753/1
title: bract-gland selection

description: Bee visitation to blossoms of Dalechampia bidentata in relation to area of resin gland and size of upper bracts.
DOI: 10.5061/dryad.8753/2
title: GSD-selection_female

description: Rate of contact with stigmas in relation to gland-stigma distance in blossoms with no male flowers open.
DOI: 10.5061/dryad.8753/3
title: GSD-selection_bisexual-b

description: Rate of bee contact with stigmas of Dalechampia bidentata in relation to the gland-stigma distance, bisexual blossoms.
DOI: 10.5061/dryad.7933/3
title: GenBank_wasps_MLepR1

description: Sequences for MLepR1 primer binding site in 342 species of parasitoid wasps as retrieved from GenBank on Sep.2010 (via BOLD)
DOI: 10.5061/dryad.7933/6
title: Data 29 retrieved host samples

description: Data file for the 29 records of host samples retrieved from molecular analysis of the wasps' abdominal contents.
DOI: 10.5061/dryad.7933/7
title: Data 29 wasp samples

description: Data file for the 29 wasp samples for which host DNA was retrieved after molecular analysis of the wasps' abdominal contents.
DOI: 10.5061/dryad.8546/2
title: Analysis2 - alignments and trees when basal angiosperms are considered
DOI: 10.5061/dryad.8729/1
title: origin .obj files for Fig. 1

description: This is the object file of Origin, a widely-used painting software. You can process this compressed file with Winrar and then open it with Origin.
DOI: 10.5061/dryad.8729/2
title: origin .obj files for Fig. 2

description: This is the object file of Origin, a widely-used painting software. You can process this compressed file with Winrar and then open it with Origin.
DOI: 10.5061/dryad.8729/3
title: origin .obj files for Fig. 3

description: This is the object file of Origin, a widely-used painting software. You can process this compressed file with Winrar and then open it with Origin.
DOI: 10.5061/dryad.gn1v3/7
title: C_megar_mtDNABestTreePhylomapper

description: Tree used for estimation of evolution in dispersal distance.
DOI: 10.5061/dryad.1js1n/1
title: Egan_et_al_EvolutionMS
DOI: 10.5061/dryad.7933/1
title: GenBank_Diptera_MLepR1

description: Sequences for MLepR1 primer binding site in 1990 species of Diptera as retrieved from GenBank on Sep.2010 (via BOLD)
DOI: 10.5061/dryad.7933/10
title: 29host_boldtracefiles

description: Electropherogram / trace files for the host partial COI barcode sequences retrieved from molecular analysis of abdominal contents of wasp samples using primer pair LepF1/MLepR1.
DOI: 10.5061/dryad.7933/8
title: 29Host sequences retrieved from guts

description: Fasta file for the 29 host sequences (partial COI barcode) retrieved from molecular analysis of the adult wasps' abdominal contents.
DOI: 10.5061/dryad.7933/9
title: 26 of 29 wasp sequences

description: Fasta file for COI barcodes obtained in 26 of the 29 wasp samples from which host sequences were also retrieved after molecular analysis of abdominal contents.
DOI: 10.5061/dryad.8035/1
title: xxl_dxl_mit

description: haplotype sequences for XXL and DXL mountains
DOI: 10.5061/dryad.8035/2
title: xxldxlSTR

description: the STR frequency data for XXL and DXL
DOI: 10.5061/dryad.8546/3
title: Analysis3 - alignments and trees when gymnosperms are considered
DOI: 10.5061/dryad.8546/4
title: Analysis4 - alignments and trees when basal angiosperms and gymnosperms are considered
DOI: 10.5061/dryad.8651/1
title: yeaman_otto_whitlock_2011_source_code_documentation
DOI: 10.5061/dryad.8729/4
title: csv files for Fig. 1

description: The same as in "origin .obj files for Fig. 1.rar".
DOI: 10.5061/dryad.8729/5
title: csv files for Fig. 2

description: The same as in "origin .obj files for Fig. 2.rar".
DOI: 10.5061/dryad.gn1v3/10
title: CapeV

description: Raw sequence data that was used to phase nuclear alleles.  These are for the basin Cape Vogel.
DOI: 10.5061/dryad.gn1v3/11
title: EI

description: Raw sequence data that was used to phase nuclear alleles.  These are for the eastern islands.
DOI: 10.5061/dryad.gn1v3/8
title: C_megar_Locations_phylomapper

description: Latitude and longitude positions of each sample used for estimation of evolution in dispersal distances.
DOI: 10.5061/dryad.gn1v3/9
title: BB_SPB

description: Raw sequence data that was used to phase nuclear alleles.  These are for the basins Bintuni and South Papua.
DOI: 10.5061/dryad.75748/1
title: COI_Alignment
DOI: 10.5061/dryad.75748/2
title: ATP6_Alignment
DOI: 10.5061/dryad.8539/1
title: fine_scale_females

description: Microsatellite genotypes and GPS coordinates of FEMALE African striped mice for fine-scale genetic analysis. Mice were collected from August to November 2008 in the Goegap Nature Reserve, South Africa. The file is in Spagedi format: individual identification, GPS coordinates (Location 1&2) and genotypes of 12 microsatellite loci.
DOI: 10.5061/dryad.8768/1
title: raw_pigmentation_data_east_australia

description: This data file contains raw thoracic trident pigmentation scores for three replicates of 35 individuals of two sexes at two rearing temperatures from eighteen populations collected along the Australian East Coast.
DOI: 10.5061/dryad.8768/2
title: raw_pcr_data_east_australia

description: This data file contains the raw realtime PCR results for ebony expression in females from eighteen populations collected from the Australian East Coast (three replicates).  The twodeltacp is the normalised ebony transcript abundance relative to the housekeeping control RPL11.
DOI: 10.5061/dryad.8768/3
title: average_pcr_pigmentation_east_australia

description: This data file contains the population averages of the ebony expression data and the thoracic trident scores used for linear regression analysis in females from eighteen populations from the Australian east Coast.
DOI: 10.5061/dryad.8768/4
title: selection_study_pcr_pigmentation_data

description: This data file contains the average pigmentation scores and ebony PCR data for the artificial selection study.  twodeltacp is the normalised ebony expression scores relative to the housekeepking gene RpL11.
DOI: 10.5061/dryad.gn1v3/12
title: MB

description: Raw sequence data that was used to phase nuclear alleles.  These are for the basin Meervlakte.
DOI: 10.5061/dryad.8296/1
title: Dryad supplement info for MER. septosporum MER-10-0451.R1

description: The 67 D. septosporum sensu stricto ITS sequences that were either generated in this study or accessed via public databases that were used in the identification and further evaluation of primers. The accession numbers themselves are hyperlinked to their database of origin.
DOI: 10.5061/dryad.8416/1
title: Image files

description: Images of the fishes collected from Taal Lake, Philippines.
DOI: 10.5061/dryad.8416/4
title: ImageData

description: Standard lengths, BOLD process ID of the fishes collected in Taal Lake, Philippines
DOI: 10.5061/dryad.8447/1
title: Clare data

description: Sequences generated from guano collected from the bat Myotis lucifugus. Please contact the corresponding author for details regarding the appropriate use of these data.
DOI: 10.5061/dryad.8539/2
title: fine_scale_males

description: Microsatellite genotypes and GPS coordinates of MALE African striped mice for fine-scale genetic analysis. Mice were collected from August to November 2008 in the Goegap Nature Reserve, South Africa. The file is in Spagedi format: individual identification, GPS coordinates (Location 1&2) and genotypes of 12 microsatellite loci.
DOI: 10.5061/dryad.8539/3
title: Stripm-7pop

description: Microsatellite genotypes of seven subpopulations of African striped mice collected August to November 2008 in the Goegap Nature Reserve, South Africa. Individuals of the first two populations, Start and End, are also represented in the Spagedi data files "fine_scale_females.txt" and fine_scale_males.txt". Individual identifiers refer to m=male and f=female. Geographic distances between the populations are available in the supporting online information.
DOI: 10.5061/dryad.8790/1
title: final_tree

description: The 55473 tip phylogeny in newick format presented in the paper.
DOI: 10.5061/dryad.4m80r/1
title: C lunulatus microsatellite data

description: Allele frequences for 12 microsatellite loci. Arelquin format data file. Genomic DNA extracted from fin clip tissue samples.
DOI: 10.5061/dryad.4m80r/2
title: C. trifascialis microsatellite data

description: Allele frequences for 11 microsatellite loci. Arelquin format data file. Genomic DNA extracted from fin clip tissue samples.
DOI: 10.5061/dryad.8779/2
title: Fig2AB

description: Fig2AB.xls provides the raw data used in figure 2 A and B.Data are presented into three sheets which show redundancy:Pax vs Pin: data obtained when germinated and ungerminated pollen grains either from P. axillaris or P. integrifolia were counted. Pax vs Phy: data obtained when germinated and ungerminated pollen grains either from P. axillaris or F1 hybrids were counted.Pin vs Phy: data obtained when germinated and ungerminated pollen grains either from P. integrifolia or F1 hybrids were counted.
DOI: 10.5061/dryad.8779/3
title: Fig2CDE

description: Fig2CDE.xls provides the raw data used in figure 2 C, D and E. Data are presented into two excel sheets: "data" with the raw source data, and "Length" with the length of pollen tubes calculated.In the "data" sheet, each cross is named after the following rules:Pax is a P. axillaris plant of a given numberPin is a P. integrifolia plant of a given numberPh is a F1 hybrid plant of a given numberThe plant that stand before the "x" is always the female (seed parent) and the one after the "x" is the male (pollen donour). The name is then followed by the date of the pollination (dd mm yy).
DOI: 10.5061/dryad.8779/4
title: Fig3B

description: Fig3B.xls provides the raw data used in Figure 3 B. Data are presented into two excel sheets: "P.axillaris" and "Hybrids". All data were obtained either in Minas, Uruguay, or in Rivera, Uruguay.These data sheets show the number of visitations of "small bees", "big bees", "diurnal butterflies" and hawkmoths on P. axillaris and F1 hybrids during day (8h-12h) and night (21h-23h) periods. Behaviours are devided into "Approaches", "Landings" and "Feedings".
DOI: 10.5061/dryad.8779/5
title: Fig 1CD

description: Fig1CD.xls provides the raw data used in the figure 1, C and D.C: These data were obtained in José Ignacio (location 1), Uruguay and describe the weight (in g) of the P. axillaris capsules obtained after having covered the flowers either during the night or that were not covered (control). The replications that were covered during the day were lost due to mowing by farmers.D: These data were obtained in Carmelo (location 2), Uruguay and describe the weight (in g) of the P. axillaris capsules obtained after having covered the flowers either during the day or night, or not covered at all (control).
DOI: 10.5061/dryad.8779/6
title: Fig 3A

description: Fig 3A.xls provides the raw data used in Figure 3 A. Data are presented into three excel sheets: "PintegrifoliaPuertoViejo", "hybridsPuerto Viejo" and "NightPuerto Viejo". All data were obtained in Puerto Viejo, Uruguay. These data sheets show the number of visitations of "small bees", "big bees", "butterflies" and other insects on P. integrifolia and F1 hybrids in Puerto Viejo.
DOI: 10.5061/dryad.8779/7
title: Fig 4AB

description: Fig 4AB.xls provides the raw data used in Figure 4 A and B.Data are presented into three excel sheets: "Capsules formation rate PV" and "Size & Weight PV" for Puerto Viejo experiment only, and "Minas" for the part of the experiment that took place in Minas, Uruguay. The number of capsules formed and  number of marks found is shown. Then, the percentage of capsule formed is calculated.
DOI: 10.5061/dryad.8787/2
title: MicrosatDataAgudo

description: Individuals genotypes from 20 microsatellite loci in 177 Egyptian vultures (Neophron percnopterus) from three different locations from Western Europe (Iberian Peninsula, Canary Islands and Balearic Islands)
DOI: 10.5061/dryad.7pd8q/1
title: AFLP matrix
DOI: 10.5061/dryad.7pd8q/2
title: cpDNA restriction haplotypes
DOI: 10.5061/dryad.7pd8q/3
title: Morphological Data Matrix
DOI: 10.5061/dryad.7pd8q/4
title: Seed viability data
DOI: 10.5061/dryad.83n0t/1
title: Kahilainen_etal_MEC_dryad_raw_data

description: Genetic and ecomorphological dataset from Kahilainen et al. Species introduction promotes hybridization and introgression in Coregonus: is there sign of selection against hybrids? Molecular Ecology (online ISSN:1095-8312). Columns A-B give individual code and a priori classification followed by mtDNA (C) and microsatellite data (D-Q). Columns R-U give assignment results from genetic data and final posteriori grouping (WF=whitefish, V=vendace, F1=F1 hybrid, BCV=backcross to vendace and BCWF=backcross to whitefish). Body size and morphology is given in W-AA, niche utilization in AB-AP and life-history traits in AQ-AU. Sex is coded as 1=female, 2=male, 3=juvenile and sexual maturity as 1-3=immature and 4=mature.