cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ftguu8
title: Occurrence Download

description: A dataset containing 268764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acacia longifolia (Andrews) Willd., Acacia longissima H.L.Wendl., Vachellia macracantha (Humb. & Bonpl. ex Willd.) Seigler & Ebinger, Acacia mangium Willd., Acacia mearnsii De Wild., Acacia melanoxylon R.Br., Acacia mollifolia Maiden & Blakely, Acacia murrayana F.Muell. ex Benth., Acacia neriifolia A.Cunn. ex Benth., Acacia nilotica Linnaeus, 1753, Acacia obtusata Sieber ex DC., Acacia oxycedrus Sieber ex DC., Acacia paradoxa DC., Acacia parramattensis Tindale, Acacia penninervis Sieber ex DC., Acacia podalyriifolia A.Cunn. ex G.Don, Acacia pravissima F.Muell. ex Benth., Acacia prominens A.Cunn. ex G.Don, Acacia provincialis A.Camus, Pararchidendron pruinosum (Benth.) I.C.Nielsen, Acacia pycnantha Benth., Acacia redolens Maslin, Acacia retinodes Schltdl., Acacia rostellifera Benth., Acacia rubida A.Cunn., Acacia salicina Lindl., Acacia schinoides Benth., Acacia semicircinalis Maiden & Blakely, Acacia simsii A.Cunn. ex Benth., Acacia sophorae (Labill.) R.Br., Acacia spectabilis A.Cunn. ex Benth., Acacia stenophylla A.Cunn. ex Benth., Acacia stricta (Andrews) Willd., Acacia suaveolens (Sm.) Willd., Acacia terminalis (Salisb.) J.F.Macbr., Vachellia tortilis (Forssk.) Galasso & Banfi, Acacia tortuosa Linnaeus, 1759, Acacia trineura F.Muell., Acacia uncifolia (J.M.Black) O'Leary, Acacia verticillata (L'Her.) Willd., Acacia vestita Ker Gawl., Acacia victoriae Benth., Acacia viscidula Benth., Parasenegalia visco (Lorentz ex Griseb.) Seigler & Ebinger, Acacia williamsonii Court, Acaciella angustissima (Mill.) Britton & Rose, Acaciella glauca (L.) L.Rico, Acaciella villosa (Sw.) Britton & Rose, Acaena agnipila Gand., Acaena anserinifolia (J.R.Forst. & G.Forst.) Druce, Acaena argentea Ruiz & Pav., Acaena caesiiglauca (Bitter) Bergmans, Acaena echinata Nees, Acaena inermis Hook.fil., Acaena microphylla Hook.fil., Acaena novae-zelandiae Kirk)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 268764 records from 529 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254671-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qiljch
title: Occurrence Download

description: A dataset containing 1223 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ventenata dubia (Leers) Coss. & Durieu"
 ]
}

 The dataset includes 1223 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008386-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hb3c5s
title: Occurrence Download

description: A dataset containing 269616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achillea nobilis L., Achillea ptarmica L., Achillea salicifolia Besser, Achillea setacea Waldst. & Kit., Achillea tomentosa L., Achilus flammeus Kirby, 1818, Achnanthes pseudogroenlandica Hendey, 1964, Achnatherum calamagrostis (L.) P.Beauv.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 269616 records from 569 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254679-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru6cfe
title: Occurrence Download

description: A dataset containing 3275 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Glandularia aristigera (S.Moore) Tronc.)"
 ]
}

 The dataset includes 3275 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010494-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ga7c79
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Inga longispica Standl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010495-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10814943
title: Hyperspectral and Polarization images of an experimental oil painting

description: This repository contains 4 hyperspectral images in the VNIR range (400 - 1000 nm) and 4 hyperspectral images in the SWIR range (1000 - 2500 nm) of an experimental oil painting.

Each scene (P0,P1,P2,P3) is associated with the capturing with a linear polarization filter placed in front of the hyperspectral cameras. The rotation angles of the polarizers are found in the spreadsheet 'theta.xlsx'

Please cite as:

Grillini, Federico, et al. "Relationship between reflectance and degree of polarization in the VNIR-SWIR: A case study on art paintings with polarimetric reflectance imaging spectroscopy." PloS one 19.5 (2024): e0303018.
DOI: 10.5281/zenodo.10814944
title: Hyperspectral and Polarization images of an experimental oil painting

description: This repository contains 4 hyperspectral images in the VNIR range (400 - 1000 nm) and 4 hyperspectral images in the SWIR range (1000 - 2500 nm) of an experimental oil painting.

Each scene (P0,P1,P2,P3) is associated with the capturing with a linear polarization filter placed in front of the hyperspectral cameras. The rotation angles of the polarizers are found in the spreadsheet 'theta.xlsx'

Please cite as:

Grillini, Federico, et al. "Relationship between reflectance and degree of polarization in the VNIR-SWIR: A case study on art paintings with polarimetric reflectance imaging spectroscopy." PloS one 19.5 (2024): e0303018.
DOI: 10.15468/dl.ebhp5a
title: Occurrence Download

description: A dataset containing 28330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Glebionis coronaria (L.) Tzvelev)"
 ]
}

 The dataset includes 28330 records from 432 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010497-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwew8s
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Glebionis coronarium (L.) C.Jeffrey)"
 ]
}

 The dataset includes 45 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010498-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11149752
title: The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model

description: ## Identification of transcription factor binding sites clustered regions

First, the TFBSs were identified from ATAC-seq peaks by FIMO. The position-specific weight matrices (PWMs) of transcription factors were downloaded from CIS-BP databases. The genomic sequences under the open chromatin regions were used as inputs for FIMO with a custom library of all motifs for each species to scan for motif instances at a p-value threshold of 1e-5. 

Then, an established method was used to identify TFCRs by performing the Gaussian kernel density estimations across the genome (with a bandwidth of 300bp centered on each TFBS). Each peak in density profile was considered a TFCR. To determine the complexity of each TFCR, the Gaussian kernelized distances from each peak that contributed at least 0.1 to its strength were determined. The complexity of each TFCR was determined by the quantity and proximity of the contributing TFBS. We combined motif instances based on the TF family information from CIS-BP to calculate the complexity of TFCR. The window for each TFCR was determined by finding the maximum distance (in bp) from the TFCR to a contributing TF and then adding 150 bp (one-half of the bandwidth). Each window was centered on the TFCR. The identified TFCR was grouped into 10 groups based on their complexity from low to high. 

usage:   indir="Human_fimo" # the directory where you put the output files of FIMO   motifMap="Homo_sapiens_2020_0920/TF_Information_all_motifs_plus.txt" # the mapping relationship of TF and its TF family from CIS-BP   cd Codes/TFCR_embryo   perl d-motif_combine.pl $indir TFfamily $motifMap   perl e-tfpos_combine.pl TFfamily   perl f1-tf_bed-new-c.pl TFfamily   perl 0-merge-TFCR.pl $indir TFfamily
DOI: 10.5281/zenodo.11149753
title: The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model

description: ## Identification of transcription factor binding sites clustered regions

First, the TFBSs were identified from ATAC-seq peaks by FIMO. The position-specific weight matrices (PWMs) of transcription factors were downloaded from CIS-BP databases. The genomic sequences under the open chromatin regions were used as inputs for FIMO with a custom library of all motifs for each species to scan for motif instances at a p-value threshold of 1e-5. 

Then, an established method was used to identify TFCRs by performing the Gaussian kernel density estimations across the genome (with a bandwidth of 300bp centered on each TFBS). Each peak in density profile was considered a TFCR. To determine the complexity of each TFCR, the Gaussian kernelized distances from each peak that contributed at least 0.1 to its strength were determined. The complexity of each TFCR was determined by the quantity and proximity of the contributing TFBS. We combined motif instances based on the TF family information from CIS-BP to calculate the complexity of TFCR. The window for each TFCR was determined by finding the maximum distance (in bp) from the TFCR to a contributing TF and then adding 150 bp (one-half of the bandwidth). Each window was centered on the TFCR. The identified TFCR was grouped into 10 groups based on their complexity from low to high. 

usage:   indir="Human_fimo" # the directory where you put the output files of FIMO   motifMap="Homo_sapiens_2020_0920/TF_Information_all_motifs_plus.txt" # the mapping relationship of TF and its TF family from CIS-BP   cd Codes/TFCR_embryo   perl d-motif_combine.pl $indir TFfamily $motifMap   perl e-tfpos_combine.pl TFfamily   perl f1-tf_bed-new-c.pl TFfamily   perl 0-merge-TFCR.pl $indir TFfamily
DOI: 10.15468/dl.8wb5ys
title: Occurrence Download

description: A dataset containing 78669 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Fossil, Living Specimen)",
 "Geometry POLYGON((-74.23666 4.33354,-73.78693 4.33354,-73.78693 4.83409,-74.23666 4.83409,-74.23666 4.33354))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 78669 records from 350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010496-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4azp3
title: Occurrence Download

description: A dataset containing 226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Carcharodon carcharias (Linnaeus, 1758)"
 ]
}

 The dataset includes 226 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010500-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p5vntf
title: Occurrence Download

description: A dataset containing 51768 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Glebionis segetum (L.) Fourr.)"
 ]
}

 The dataset includes 51768 records from 559 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010499-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azxvzy
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium seirotrichum Ducell. & Maire"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010502-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy7ctk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Inga yasuniana T.D.Penn."
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010503-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7752gr
title: Occurrence Download

description: A dataset containing 967244 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Glechoma hederacea L.)"
 ]
}

 The dataset includes 967244 records from 3063 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010501-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8cyq4t
title: Occurrence Download

description: A dataset containing 4653 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Russian Federation, Ukraine, Germany, Poland, Switzerland, Austria, Czechia, Slovakia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudoscleropodium purum (Hedw.) M.Fleisch."
 ]
}

 The dataset includes 4653 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136622-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g57f26
title: Occurrence Download

description: A dataset listing the 216 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-69.71871 11.51184,-69.67998 11.51369,-69.77179 11.70348,-69.80822 11.70769,-69.71871 11.51184))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 216 records were derived from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114395-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cllqdd
title: Occurrence Download

description: A dataset containing 4233 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Codium fragile (Suringar) Har."
 ]
}

 The dataset includes 4233 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013959-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hnfgbm
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pternistis camerunensis (Alexander, 1909)"
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004795-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2escsu
title: Occurrence Download

description: A dataset containing 2311 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Neofavolus alveolaris (DC.) Sotome & T.Hatt."
 ]
}

 The dataset includes 2311 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133857-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o7cwpt
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Peru",
 "Country is Guyana"
 ]
 },
 {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Coordinate invalid",
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate reprojected",
 "Issue is Coordinate reprojection failed",
 "Issue is Coordinate reprojection suspicious",
 "Issue is Coordinate accuracy invalid",
 "Issue is Coordinate precision invalid",
 "Issue is Coordinate uncertainty meters invalid",
 "Issue is Coordinate precision/uncertainty mismatch",
 "Issue is Country coordinate mismatch",
 "Issue is Country mismatch",
 "Issue is Country invalid",
 "Issue is Country derived from coordinates",
 "Issue is Continent country mismatch",
 "Issue is Continent invalid",
 "Issue is Continent derived from coordinates",
 "Issue is Presumed swapped coordinate",
 "Issue is Presumed negated longitude",
 "Issue is Presumed negated latitude",
 "Issue is Recorded date mismatch",
 "Issue is Recorded date invalid",
 "Issue is Recorded date unlikely",
 "Issue is Taxon match fuzzy",
 "Issue is Taxon match higher rank",
 "Issue is Taxon match none",
 "Issue is Depth not metric",
 "Issue is Depth unlikely",
 "Issue is Depth min max swapped",
 "Issue is Depth non numeric",
 "Issue is Elevation unlikely",
 "Issue is Elevation min max swapped",
 "Issue is Elevation not metric",
 "Issue is Elevation non numeric",
 "Issue is Modified date invalid",
 "Issue is Modified date unlikely",
 "Issue is Identified date unlikely",
 "Issue is Identified date invalid",
 "Issue is Basis of record invalid",
 "Issue is Type status invalid",
 "Issue is Multimedia date invalid",
 "Issue is Multimedia URI invalid",
 "Issue is References URI invalid",
 "Issue is Error during interpretation",
 "Issue is Individual count invalid"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Eumops trumbulli (Thomas, 1901)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013959-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gb86sp
title: Occurrence Download

description: A dataset containing 1120 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Beltraniella"
 ]
}

 The dataset includes 1120 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025997-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mhaf4
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is MVZ Herp Collection (Arctos)",
 "TaxonKey is Liolaemus cuyanus Cei & Scolaro, 1980"
 ]
}

 The dataset includes 72 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0135292-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thj5vk
title: Occurrence Download

description: A dataset containing 38059 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Danaus plexippus (Linnaeus, 1758)"
 ]
}

 The dataset includes 38059 records from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013959-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsvya6
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zeuxine philippinensis (Ames) Ames"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136623-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfuysx
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyoscyamus grandiflorus Franch."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025998-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nybazn
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola brachyphylla W.Becker"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136624-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckg7ta
title: Occurrence Download

description: A dataset containing 9851 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Lamprotornis superbus Rüppell, 1845"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9851 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013960-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2m5vh9
title: Occurrence Download

description: A dataset containing 49433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fucus vesiculosus L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 49433 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010006-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gue54y
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyoscyamus kurdicus Bornm."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026005-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.