cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9986699.v1
title: MOESM4 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 4: Table S4. GO analysis associated with DEGs among four
DOI: 10.6084/m9.figshare.9986702.v1
title: MOESM4 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 4: Data File S3. Sequence file of construct 17613.
DOI: 10.6084/m9.figshare.9986693.v1
title: MOESM1 of Genotypic characteristics of Chinese patients with BHD syndrome and functional analysis of FLCN variants

description: Additional file 1: Primer sequences for minigene construction, mutagenesis and RT-PCR. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.9986696.v1
title: MOESM3 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 3: Data File S2. Sequence file of construct 17610.
DOI: 10.6084/m9.figshare.9986684
title: MOESM2 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 2: Data File S1. Sequence file of construct 17203.
DOI: 10.6084/m9.figshare.9986687
title: MOESM3 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 3: Table S3. DENGs among four groups
DOI: 10.6084/m9.figshare.9986684.v1
title: MOESM2 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 2: Data File S1. Sequence file of construct 17203.
DOI: 10.6084/m9.figshare.9986678
title: MOESM2 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 2: Table S2. DEMs among four groups
DOI: 10.6084/m9.figshare.9986687.v1
title: MOESM3 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 3: Table S3. DENGs among four groups
DOI: 10.6084/m9.figshare.9986672
title: MOESM1 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 1: Table S1. DEGs among four groups
DOI: 10.6084/m9.figshare.9986675
title: MOESM14 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 14: Data File S8. MATLAB script to generate results table.
DOI: 10.6084/m9.figshare.9986666
title: MOESM13 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 13: Data File S7. MATLAB script to run the screening experiment on the rice genome.
DOI: 10.6084/m9.figshare.9986672.v1
title: MOESM1 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 1: Table S1. DEGs among four groups
DOI: 10.6084/m9.figshare.9986675.v1
title: MOESM14 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 14: Data File S8. MATLAB script to generate results table.
DOI: 10.6084/m9.figshare.9986678.v1
title: MOESM2 of Identification of differentially expressed genes and pathways between intramuscular and abdominal fat-derived preadipocyte differentiation of chickens in vitro

description: Additional file 2: Table S2. DEMs among four groups
DOI: 10.6084/m9.figshare.9986663
title: MOESM12 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 12: Data File S6. MATLAB script to search genome for given sequence.
DOI: 10.6084/m9.figshare.9986657
title: MOESM11 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 11: Data File S5. MATLAB data file containing information on rice genes. ( https://www.mathworks.com/products/matlab.html ).
DOI: 10.6084/m9.figshare.9986663.v1
title: MOESM12 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 12: Data File S6. MATLAB script to search genome for given sequence.
DOI: 10.6084/m9.figshare.9986666.v1
title: MOESM13 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 13: Data File S7. MATLAB script to run the screening experiment on the rice genome.
DOI: 10.6084/m9.figshare.9986648
title: MOESM10 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 10: Data File S4. MATLAB data file containing lacO sequence information. ( https://www.mathworks.com/products/matlab.html ).
DOI: 10.6084/m9.figshare.9986657.v1
title: MOESM11 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 11: Data File S5. MATLAB data file containing information on rice genes. ( https://www.mathworks.com/products/matlab.html ).
DOI: 10.6084/m9.figshare.9986648.v1
title: MOESM10 of A modular steroid-inducible gene expression system for use in rice

description: Additional file 10: Data File S4. MATLAB data file containing lacO sequence information. ( https://www.mathworks.com/products/matlab.html ).
DOI: 10.6084/m9.figshare.9986573
title: Least limiting water range in Spodosol and initial growth of sugarcane under soil bulk densities and salinities

description: ABSTRACT The impacts of agricultural mechanization and soil management on sugarcane activity may compromise the growth of plants. This study aimed to evaluate the initial growth of sugarcane (Saccharum officinarum) at soil densities under two salinity conditions, associated with the least limiting water range (LLWR), and obtain the critical density for the Spodosol. The treatments consisted of the use of five bulk densities (1.40; 1.50; 1.60; 1.70 and 1.80 Mg m-3) and two conditions of soil salinity (ECse = 0.5 and 3.0 dS m-1). Morphological variables and biomass of sugarcane plants were measured and, simultaneously, undisturbed soil samples were collected in the layers of 0.02-0.08 m to determine the water retention curve, soil resistance to penetration and the least limiting water range. In general, it was concluded that sugarcane plants has higher growth between the bulk densities of 1.50 and 1.60 Mg m-3. The salinized soil showed higher LLWR than the non-salinized soil, leading to higher shoot fresh mass at bulk densities between 1.49 and 1.66 Mg m-3. The critical bulk densities observed for the Spodosol were 1.70 Mg m-3 for the non-salinized soil and 1.77 Mg m-3 for the salinized soil.
DOI: 10.6084/m9.figshare.9986576
title: Discovery of vestige sedimentary archives of the India-Asia collision in the eastern Yarlung Zangbo suture zone

description: The supporting information in this document provides: Supplementary tables and their captions: (1) The caption of Table S1 (LA-ICP-MS dating analytical data of zircons); (2) The caption of Table S2 (Trace elemental compositions of detrital zircons); (3) Table S3: Orientation data of strata and foliations; (4) The caption of Table S4 (Trace element concentrations of marble samples and crucial parameters) Supplementary figures and their captions: (1) Locations of photographs in Figure S2; (2) Field photos to show the contact relationship between the Langxian unit and the Langjiexue Group/Dazhuka Fm or Gangdese arc as well as macroscopic features of Marble Layer 1; (3) CL images of detrital zircons from both Langxian unit and Langjiexue Group showing their identical zircon morphology; (4) The REE patterns of detrital zircons (cores) of samples from Langxian unit; (5) Age vs. depth chart to show the estimated maximum depositional age of each detrital zircon sample from Marble Layer 1. <b></b><br>
DOI: 10.6084/m9.figshare.9986573.v1
title: Least limiting water range in Spodosol and initial growth of sugarcane under soil bulk densities and salinities

description: ABSTRACT The impacts of agricultural mechanization and soil management on sugarcane activity may compromise the growth of plants. This study aimed to evaluate the initial growth of sugarcane (Saccharum officinarum) at soil densities under two salinity conditions, associated with the least limiting water range (LLWR), and obtain the critical density for the Spodosol. The treatments consisted of the use of five bulk densities (1.40; 1.50; 1.60; 1.70 and 1.80 Mg m-3) and two conditions of soil salinity (ECse = 0.5 and 3.0 dS m-1). Morphological variables and biomass of sugarcane plants were measured and, simultaneously, undisturbed soil samples were collected in the layers of 0.02-0.08 m to determine the water retention curve, soil resistance to penetration and the least limiting water range. In general, it was concluded that sugarcane plants has higher growth between the bulk densities of 1.50 and 1.60 Mg m-3. The salinized soil showed higher LLWR than the non-salinized soil, leading to higher shoot fresh mass at bulk densities between 1.49 and 1.66 Mg m-3. The critical bulk densities observed for the Spodosol were 1.70 Mg m-3 for the non-salinized soil and 1.77 Mg m-3 for the salinized soil.
DOI: 10.6084/m9.figshare.9986564
title: Effects of cyclosporine on ischemia-reperfusion injuries in rat kidneys. An experimental model

description: Abstract Purpose To assess Cyclosporine A (CsA) therapy at an intraperitoneal dose of 15 mg.kg -1 in a rodent model of non-septic renal ischemia. Methods Twenty male Wistar rats were randomized to receive CsA therapy or none therapy before undergoing 30 minutes of renal ischemia followed by reperfusion. Additionally, 10 rats were randomized to undergo the same surgical procedure of the aforementioned animals with neither ischemia nor CsA therapy. Twelve hours after kidney ischemia, the left kidneys were evaluated for histological injury according to Park’s criteria. Serum creatinine (Cr), urea nitrogen (Ur) and sodium levels were obtained at different times of the experimental protocol. Results Rodents in the CsA group showed negative results (p&lt;0.05) in serum variables (Cr: 0.41±0.05mg/dL vs . 4.17±1.25mg/dL; Ur: 40.90±3.98mg/dL vs . 187.70±22.93mg/dL) even the non CsA or control group (Cr: 0.35±0.07mg/dL vs . 3.80±1.20mg/dL; Ur: 40.10±4.70mg/dL vs . 184.50±49.80mg/dL). The negative results were also verified in histological evaluation, CsA group had 50% in the very severe grade of lesion, 10% in the severe and 40% in the moderate to severe whereas the control group had 90% in the very severe grade. Conclusion CsA was incapable of preventing the deleterious effects of ischemia-reperfusion injury in rat kidneys.
DOI: 10.6084/m9.figshare.9986576.v2
title: Discovery of vestige sedimentary archives of the India-Asia collision in the eastern Yarlung Zangbo suture zone

description: The supporting information in this document provides: Supplementary tables and their captions: (1) The caption of Table S1 (LA-ICP-MS dating analytical data of zircons); (2) The caption of Table S2 (Trace elemental compositions of detrital zircons); (3) Table S3: Orientation data of strata and foliations; (4) The caption of Table S4 (Trace element concentrations of marble samples and crucial parameters) Supplementary figures and their captions: (1) Locations of photographs in Figure S2; (2) Field photos to show the contact relationship between the Langxian unit and the Langjiexue Group/Dazhuka Fm or Gangdese arc as well as macroscopic features of Marble Layer 1; (3) CL images of detrital zircons from both Langxian unit and Langjiexue Group showing their identical zircon morphology; (4) The REE patterns of detrital zircons (cores) of samples from Langxian unit; (5) Age vs. depth chart to show the estimated maximum depositional age of each detrital zircon sample from Marble Layer 1. <b></b><br>
DOI: 10.6084/m9.figshare.9986561
title: Work experience and social inclusion of individuals with schizophrenia

description: Abstract Objectives: to understand the positive and negative aspects of work-related experiences reported by individuals with schizophrenia who use a specialty outpatient clinic involved in a work inclusion program. Methods: observational qualitative approach study. Eleven participants answered an open guiding question: “what do you see as positive and negative in your work experience?”. Data were categorized by thematic analysis. Results: four categories were identified: overload and lack of information/guidance at work; the importance of remuneration; assuming responsibility, hope and overcoming; disease experience, health and work care. The study showed the importance of seeking effective labor inclusion strategies for individuals with schizophrenia. These strategies have to consider the disease specificities and work-related stressors as potential triggers of physical and emotional distress. Conclusion: it is essential to invest in actions that enable effective labor inclusion of people with schizophrenia. Such measures should include individuals with schizophrenia, their families, the companies and mental health professionals, taking into accountthe disease specificities, the person’s needs, interests and potential.
DOI: 10.6084/m9.figshare.9986564.v1
title: Effects of cyclosporine on ischemia-reperfusion injuries in rat kidneys. An experimental model

description: Abstract Purpose To assess Cyclosporine A (CsA) therapy at an intraperitoneal dose of 15 mg.kg -1 in a rodent model of non-septic renal ischemia. Methods Twenty male Wistar rats were randomized to receive CsA therapy or none therapy before undergoing 30 minutes of renal ischemia followed by reperfusion. Additionally, 10 rats were randomized to undergo the same surgical procedure of the aforementioned animals with neither ischemia nor CsA therapy. Twelve hours after kidney ischemia, the left kidneys were evaluated for histological injury according to Park’s criteria. Serum creatinine (Cr), urea nitrogen (Ur) and sodium levels were obtained at different times of the experimental protocol. Results Rodents in the CsA group showed negative results (p&lt;0.05) in serum variables (Cr: 0.41±0.05mg/dL vs . 4.17±1.25mg/dL; Ur: 40.90±3.98mg/dL vs . 187.70±22.93mg/dL) even the non CsA or control group (Cr: 0.35±0.07mg/dL vs . 3.80±1.20mg/dL; Ur: 40.10±4.70mg/dL vs . 184.50±49.80mg/dL). The negative results were also verified in histological evaluation, CsA group had 50% in the very severe grade of lesion, 10% in the severe and 40% in the moderate to severe whereas the control group had 90% in the very severe grade. Conclusion CsA was incapable of preventing the deleterious effects of ischemia-reperfusion injury in rat kidneys.
DOI: 10.6084/m9.figshare.9986576.v1
title: Discovery of vestige sedimentary archives of the India-Asia collision in the eastern Yarlung Zangbo suture zone

description: The supporting information in this document provides:(1) Captions of Table S1 (LA-ICP-MS dating analytical data of zircons);(2) Orientation data of strata and foliations;(3) Caption for Table S3 (Trace element concentrations and crucial parameters)(4) Field photos to show the contact relationship between the Langxian unit and the Langjiexue Group/Dazhuka Fm or Gangdese arc as well as macroscopic features of Marble Layer 1.(5) Age vs. depth chart to show the estimated maximum depositional age of each detrital zircon sample from Marble Layer 1.<b><br></b>
DOI: 10.6084/m9.figshare.9986558
title: Weed interference period and economic threshold level of ryegrass in wheat

description: ABSTRACT The study of weed interference periods and the economic threshold level (ETL) of weeds on crops allows the adoption of management methods and the rationalized use of herbicides. The objective of this study was to determine the periods of interference and to test mathematical models to determine the economic threshold level of ryegrass in the wheat crop. Two experiments were carried out in a randomized block design with four replications. The first experiment was conducted in the 2014/2015 agricultural season. The periods of interference and control of ryegrass were studied in wheat. The periods of interference and/or control were: 0, 10, 20, 30, 40, 50 and 120 days after emergence (DAE). The second experiment was conducted in the 2016/2017 agricultural season. The ETLs were studied, being the treatments composed of wheat cultivars and 12 populations of ryegrass, in competition with the respective cultivars. The results allowed concluding that the management methods of weed ryegrass must be adopted in the period between 11 and 21 days after crop emergence, which is described as a critical period of control of this weed. The wheat grain yield loss competing with ryegrass reached 59% when grown with ryegrass. For ETL, the linear regression model of the rectangular hyperbola adequately estimates grain yield losses in the presence of ryegrass. The cultivar presenting the lowest values of ETL, that is, less capacity to live with the weed, was TBIO Alvorada. The other cultivars presented similar ETL values.
DOI: 10.6084/m9.figshare.9986561.v1
title: Work experience and social inclusion of individuals with schizophrenia

description: Abstract Objectives: to understand the positive and negative aspects of work-related experiences reported by individuals with schizophrenia who use a specialty outpatient clinic involved in a work inclusion program. Methods: observational qualitative approach study. Eleven participants answered an open guiding question: “what do you see as positive and negative in your work experience?”. Data were categorized by thematic analysis. Results: four categories were identified: overload and lack of information/guidance at work; the importance of remuneration; assuming responsibility, hope and overcoming; disease experience, health and work care. The study showed the importance of seeking effective labor inclusion strategies for individuals with schizophrenia. These strategies have to consider the disease specificities and work-related stressors as potential triggers of physical and emotional distress. Conclusion: it is essential to invest in actions that enable effective labor inclusion of people with schizophrenia. Such measures should include individuals with schizophrenia, their families, the companies and mental health professionals, taking into accountthe disease specificities, the person’s needs, interests and potential.
DOI: 10.6084/m9.figshare.9986546
title: Ammonia thiosulfate in Japanese plum tree thinning

description: Abstract In order to test the use of ammonia thiosulfate (ATS) in the chemical thinning of the Japanese plum tree, a field experiment was conducted throughout the 2015/2016 and 2016/2017 crop growing seasons at Ponta Grossa, PR, Brazil. The experimental design adopted herein was a randomized block design (RBD). During the 2015/2016 season, the trial was comprised of two accesses and six treatments, such as T1 (control); T2 (ATS 4%); T3 (ATS 5%); T4 (ATS 6%); T5 (ATS 7%) and T6 (manual thinning) with four replications. During the 2016/2017 season, solely one plum tree access was taken into account along with six treatments, such as T1 (control); T2 (ATS 6%); T3 (ATS 7%); T4 (ATS 8%); T5 (ATS 9%) and T6 (manual thinning) and four replications. The evaluations were performed seven days before the application of ATS and 30 days before harvest to establish the percentage of fruit drop. The following response variables were assessed: diameter (D), fresh mass (MF), firmness (N), soluble solids (SS), titratable acidity (AT), ratio, pH and plant production (PP). Experimental data were compared by means of the Tukey test at 5% probability. The concentration of 8 % ATS was efficient in the chemical thinning of the Japanese plum fruits, having a diameter and productivity similar to the manual thinning, evidencing that such a product was amenable to enhance commercial fruit quality.
DOI: 10.6084/m9.figshare.9986549
title: Viticultural performance of Cabernet Sauvignon clones in highland region of southern Brazil

description: Abstract The Cabernet Sauvignon (CS) cultivar is one of the most widely planted wine grapes in Brazil. The final grape quality depends on the clone type, rootstock, and the terroir. This study aims to assess and characterize the effects of seven combinations of CS clones grafted onto two rootstocks on the physical–chemical parameters and productivity of the grapes in the highland of southern Brazil, during the 2012-2013, 2013-2014, 2014-2015, and 2015-2016 growing seasons. The experiment was carried out in a 14-year-old commercial vineyard, located in São Joaquim municipality, Santa Catarina State, trained on a vertical shoot position system on a double cordon with spur pruning. The treatments consisted in a completely randomized experimental block of the combination (clone/rootstock) of CS 169, 337, 341, and R5 clones grafted onto the Paulsen 1103 (P1103) rootstock, and 169, 170, and 339 clones grafted onto the Courdec 3309 (C3309) rootstock. There were significant differences among the combinations of CS grapes on productivity, physical, and chemical parameters and grape maturation. The data of principal component analysis showed that 339/C3309 and 337/P1103 combinations were the most productive, whereas the R5/P1103, 170/C3309, and 169/C3309 combinations were the best for potential winemaking under the edaphoclimatic conditions of the highlands of southern Brazil in all growing seasons evaluated.
DOI: 10.6084/m9.figshare.9986555
title: Mitigating effect of tanshinone IIA on ventricular remodeling in rats with pressure overload-induced heart failure

description: Abstract Purpose To investigate the effect of tanshinone IIA (TIIA) on ventricular remodeling in rats with pressure overload-induced heart failure. Methods Pressure overload-induced heart failure model (abdominal aortic coarctation) was established in 40 rats, which were divided into model and 5, 10 and 20 mg/kg TIIA groups. Ten rats receiving laparotomy excepting abdominal aortic coarctation were enrolled in sham-operated group. The 5, 10 and 20 mg/kg TIIA groups were treated with 5, 10 and 20 mg/kg TIIA, respectively, for 8 weeks. Results Compared with model group, in 20 mg/kg TIIA group the left ventricular ejection fraction, left ventricular fractional shortening, left ventricular systolic pressure, ±maximum left ventricular pressure rising and dropping rate, and myocardial B-cell lymphoma-2 and cleaved cysteinyl aspartate specific proteinase-3 protein levels were increased, respectively (P&lt;0.05), and the left ventricular end diastolic diameter, left ventricular end systolic diameter, left ventricular end diastolic pressure, heart weight index, left ventricular weight index, serum B-type brain natriuretic peptide, interleukin 6 and C-reactive protein levels and myocardial B-cell lymphoma-2 associated X protein level were decreased, respectively (P&lt;0.05). Conclusion TIIA may alleviate ventricular remodeling in rats with pressure overload-induced heart failure heart by reducing inflammatory response and cardiomyocyte apoptosis.