cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5947534.v1
title: Nutrient enrichment and variation in community structure on rocky shores: The potential of molluscan assemblages for biomonitoring

description: Consideration of the impacts of pollutants on elements of biodiversity and the development of cost-effective biomonitoring tools to measure those impacts are essential to coastal biodiversity conservation. To examine the effects of nutrient enrichment and to develop biomonitoring tools, a network of 11 rocky intertidal sites differing in nutrient contamination levels was established on the west coast of Ireland. Communities of molluscs on the lower shore were sampled at the sites and a range of physicochemical variables was measured to characterize levels of contamination on the shores. Total abundance and number of taxa of molluscs were reduced in contaminated sites compared to control sites. Multivariate analyses showed that the structure of the molluscan assemblages differed between contaminated and control sites, discriminating between species that were more abundant at contaminated sites and those that were more abundant at control sites. Multivariate multiple regression analysis showed that nitrite, phosphate and ammonia levels in seawater accounted for more than 45% of the variability in the community structure of molluscs. This study suggests that molluscan assemblages could be a cost-effective tool to monitor and detect changes induced by nutrient enrichment in coastal areas.
DOI: 10.17632/97rvwrjm3h
title: Data for: Combining quantitative and qualitative approaches for visual case-based reasoning on breast cancer

description: Result data of the user study (CSV file) and statistical analysis (in R).
DOI: 10.17632/dx6hgv452k
title: Talento humano, un desafío administrativo
DOI: 10.17632/g6ygz2spzx
title: Datasets from gender specific auditory brainstem responses (ABRs) from Cav2.3+/+, Cav2.3+/- and Cav2.3-/- mice following click and tone burst stimulation

description: Cav2.3+/- embryos (kindly provided by Richard j. Miller, The University of Chicago, Chicago, IL) were re-derived with C57BL/6J mice and maintained with random intra-strain mating obtaining all genotypes (Mouse Genome Informatics; MGI Ref. ID J: 66144). For subsequent ABR recordings, Cav2.3+/+ controls, heterozygous Cav2.3+/- and homozygous null mutant Cav2.3-/- mice (58 animals in total, aged 141.29 ± 0.39 days (~ 20 wks)) were used from both age-matched genders with the following characteristics: Males: Cav2.3+/+: n = 9 (♂), weight 32.72 ± 1.80 g; Cav2.3+/-: n = 9 (♂), weight 31.64 ± 1.12 g; Cav2.3-/-: n = 10 (♂), weight 31.10 ± 0.89 g. Females: Cav2.3+/+: n = 9 (♀), weight 25.41 ± 0.57 g; Cav2.3+/-: n = 10 (♀), weight 25.42 ± 1.36 g; Cav2.3-/-: n = 11 (♀), weight 27.00 ± 0.43 g. For recording of monaural bioelectrical auditory potentials, subdermal stainless steel electrodes were inserted at the vertex, axial the pinnae (+ electrode) and ventrolateral of the right pinna (- electrode). The ground electrode was positioned at the hip of the animal. To verify proper electrode positioning / conductivity, impedance measurements of all electrodes (&lt; 5 kΩ) were carried. Note that some recordings also include 2-channel, i.e. binaural measurements. ABR data acquisition was carried out at a sampling rate of 24.4 kHz and signals were bandpass filtered (high pass 300 Hz, low pass 5 kHz) using a 6-pole Butterworth filter. The individual ABR data acquisition time was 25 ms starting with a 5 ms baseline period prior to the individual acoustic stimulus onset (pre ABR baseline) and exceeding the 10 ms ABR section by another 10 ms baseline (post ABR baseline). Two types of acoustic stimuli were applied for ABR recordings in Cav2.3+/+, Cav2.3+/- and Cav2.3-/- mice using the SigGenRZ software (TDT, USA) and applied via the TDT BioSigRZ platform. The first stimulus entity was a click of 100 µs duration, with alternating polarity (switching between condensation and rarefaction). The second stimulus entity was a 4.5 ms tone burst (transient sinusoidal plus) of alternating polarity with Hann envelope rise and fall times of 1.5 ms duration each. (Note that the file header description states an overall duration of 5 ms). The frequency range covers 1 - 42 kHz in 6 kHz steps. All acoustic stimuli were applied 300 times at a rate of 20 Hz for averaging. Sound pressure levels (SPLs) were increased in 5 dB steps for clicks and 10 dB steps for tone bursts, starting from 0 dB up to 90 dB (increasing SPL mode). For tone burst experiments, low SPLs were sometimes excluded to reduce duration of ABR animal experimental. As the raw data file format (arf.) of the TDT system is not freely accessible, data were exported as txt.-files. Header descriptions for both click and tone burst related ABR txt.-files are also attached.
DOI: 10.6084/m9.figshare.26347018.v1
title: Gene Co-expression Network (TEA-GCN) of <i>Saccharomyces cerevisiae</i>

description: Gene Co-expression Network using the TEA-GCN algorithm. The network is organized into source genes (files) in the directory. Each file lists the co-expression strength (MR column) of the source gene against every other gene in the network (target genes).
DOI: 10.17632/8tcn3bzfw8
title: Field Data

description: The collected data highlights teachers’ acceptance of integrating computer simulations into chemistry instructions. While there are notable benefits in terms of students’ participation, engagement, and conceptual understanding, addressing technical challenges and providing ongoing professional training is highly recommended for sustainable and effective use of educational technology such as computer simulations.
DOI: 10.17632/9fw34stcnz
title: Visual Discrimination Training Increases the Rate and Anticipates Stimuli Processing

description: Behavioral responses during discrimination learning of Kanji stimuli
We evaluated whether increasing levels of perceptual expert-like performance throughout discrimination training, shapes the onset and rate of stimuli processing, by assessing the sensitivity with brief stimulus duration across four levels of discrimination training. Participants developed perceptual expertise throughout six Kanji discrimination training sessions (2, 3, 5, 6, 8, 9), with a same-different task. The impact of discrimination training on performance in the few milliseconds after stimulus onset was evaluated in four interspersed evaluation sessions (1, 4, 7, 10). We anticipated that greater expert-like performance would result in a faster rate of and an earlier stimulus processing.
We provide behavioral evidence for the modulation of stimulus processing during the first milliseconds after stimulus onset while participants developed perceptual expertise. There was a gradual increase in sensitivity with increasing training and longer exposure duration. The effect of training on performance varied with exposure duration. Modeling of the sensitivity data with increasing amounts of training and exposure duration suggest a faster rate and an earlier onset of stimulus processing. 
This data suggest that perceptual expertise speeds up the stimulus processing and anticipates the availability of information for coding. 

sessions (eval) 01, 04, 07, 10 are perceptual evaluation sessions with different stimulus durations

item trial 
stim1dur stimulus duration (s)
cond same or different pair
E1 E2 Stimulus 1, 2 id 
sideE2 Stimulus 2 rotation
M1 mask id
resp Participant response
rt Response time

Sessions ( tra) 02, 03, 05, 06, 08, 09 are discrimination training sessions with 100 ms stimulus duration

item trial 
cond same or different pair
E1 E2 E3 Stimulus 1 and 2 ids stimulus 2 is a perceptual mask
sideE3 Stimulus 3 rotation
M1 M2 M3 masks 1, 2, 3 ids
resp Participant response
rt Response time

rh right hand button for same response
lh left hand button for same response
DOI: 10.17632/y5fst3jk4v
title: Women's Representation in Randomized Controlled Trials Evaluating FDA supervised Medical Devices - A Systematic Review

description: A systematic review of women represetation RCT's evaluating high-risk devices.
The Data includes all referenced studies.
DOI: 10.6084/m9.figshare.6958859.v1
title: Figure 8.xlsx

description: Figure 8
DOI: 10.17632/rjrbd6sjdy
title: Data for: Comparative gene expression analysis of differentiated terminal and lateral haustoria of the obligate root parasitic plant Phelipanche ramosa (Orobanchaceae)

description: R script and count tables for comparative analysis of transcript data of Phelipanche ramosa (WOSR ecotype), organs/tissue: adventitious roots, lateral haustoria, terminal haustorium

- 20230329_BrunLemanWicke_pairwiseComp_DEGanaysis.R: R code for DEG analysis, overrepresentation analysis, and all data/results plots
- GO_terms_description.txt: translation table for GO terms
- enrich_sig_GO.xlsx: Lists of significantly enriched GO terms from DEG analysis, sorted by GO category
- trinotate_annotation_report.xls: functional annotation of the Phelipanche reference transcriptome (OrAe-BC5 build, PPGP: http://ppgp.huck.psu.edu/download.php) used for mapping 
- trinotate_report_gene_ontology_with_parents.xls: GO term assignment for unigene annotation of the Phelipanche reference transcriptome build
- rsem.gene.counts.matrix: Read count table from mapping individual datasets to the reference transcriptome build; read counts are given per reference unigene ID
DOI: 10.6084/m9.figshare.17174894.v1
title: Supplementary Material for: Weight Changes in Type 2 Diabetes and Cancer Risk: A Latent Class Trajectory Model Study

description: <b><i>Introduction:</i></b> Body mass index (BMI) is often elevated at type 2 diabetes (T2D) diagnosis. Using latent class trajectory modelling (LCTM) of BMI, we examined whether weight loss after diagnosis influenced cancer incidence and all-cause mortality. <b><i>Methods:</i></b> From 1995 to 2010, we identified 7,708 patients with T2D from the Salford Integrated Record database (UK) and linked to the cancer registry for information on obesity-related cancer (ORC), non-ORC; and all-cause mortality. Repeated BMIs were used to construct sex-specific latent class trajectories. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated using Cox regression models. <b><i>Results:</i></b> Four sex-specific BMI classes were identified; stable-overweight, stable-obese, obese-slightly-decreasing, and obese-steeply-decreasing; comprising 41%, 45%, 13%, and 1% of women, and 45%, 37%, 17%, and 1% of men, respectively. In women, the stable-obese class had similar ORC risks as the obese-slightly-decreasing class, whereas the stable-overweight class had lower risks. In men, the obese-slightly-decreasing class had higher risks of ORC (HR = 1.86, 95% CI: 1.05–3.32) than the stable-obese class, while the stable-overweight class had similar risks No associations were observed for non-ORC. Compared to the stable-obese class, women (HR = 1.60, 95% CI: 0.99–2.58) and men (HR = 2.37, 95% CI: 1.66–3.39) in the obese-slightly-decreasing class had elevated mortality. No associations were observed for the stable-overweight classes. <b><i>Conclusion:</i></b> Patients who lost weight after T2D diagnosis had higher risks for ORC (in men) and higher all-cause mortality (both genders) than patients with stable obesity.
DOI: 10.6084/m9.figshare.7314734.v1
title: Complete Mitochondrial Genomes

description: Complete Mitochondrial Genomes
DOI: 10.17632/z85vjnj9dc
title: Data for: "Executives Compensation and Performance in Family and Non-Family Brazilian Companies" published by RAC-Revista de Administração Contemporânea

description: Database of paper "Executives Compensation and Performance in Family and Non-Family Brazilian Companies" published by RAC-Revista de Administração Contemporânea. Dados relativos ao artigo "Remuneração dos Executivos e Desempenho em Empresas Brasileiras Familiares e Não Familiares" publicado na RAC-Revista de Administração Contemporânea.
DOI: 10.17632/374jbjbg6j
title: IMPACT OF CLIMATE CHANGE VARIABLES ON FOOD WESTERN RAJASTHAN SECURITY: (CASE STUDY IN JODHPUR DISTRICT)

description: Food security needs to address both the physical and financial access to food. Livelihood security is not just an issue of livelihood, in any case, a progressively specific proportion of the section on good nutritional nutrition of families and people. Appropriately, sustenance security is researched nearby the tomahawks of straightforwardness, get to, and ingestion. The noteworthiness of favorable circumstances in sustenance security is other than underlined by Supreme Court's choices grasping food rights.
DOI: 10.17632/h3srjpfjst
title: Impact of Charismatic Leadership on Crisis Management

description: this about covid virus spread
DOI: 10.17632/tntrkg27st
title: CARE algorithm dataset

description: This repository contains the CARE algorithm source code and the image dataset used in the following work: - Salvi et al., "Automated Segmentation of Fluorescence Microscopy Images for 3D Cell Detection in human-derived Cardiospheres", SciReports 2019 (DOI: 10.1038/s41598-019-43137-2) ABSTRACT The ‘cardiosphere’ is a 3D cluster of cardiac progenitor cells recapitulating a stem cell niche-like microenvironment with a potential for disease and regeneration modelling of the failing human myocardium. In this multicellular 3D context, it is extremely important to decrypt the spatial distribution of cell markers for dissecting the evolution of cellular phenotypes by direct quantification of fluorescent signals in confocal microscopy. In this study, we present a fully automated method, named CARE (‘CARdiosphere Evaluation’), for the segmentation of membranes and cell nuclei in human-derived cardiospheres. The proposed method is tested on twenty 3D-stacks of cardiospheres, for a total of 1160 images. Automatic results are compared with manual annotations and two open-source software designed for fluorescence microscopy. CARE performance was excellent in cardiospheres membrane segmentation and, in cell nuclei detection, the algorithm achieved the same performance as two expert operators. To the best of our knowledge, CARE is the first fully automated algorithm for segmentation inside in vitro 3D cell spheroids, including cardiospheres. The proposed approach will provide, in the future, automated quantitative analysis of markers distribution within the cardiac niche-like environment, enabling predictive associations between cell mechanical stresses and dynamic phenotypic changes.
DOI: 10.17632/vrrf5jrsk9
title: Data for: Income inequality and CO2 emissions in the G7, 1870-2014: Evidence from non-parametric modelling

description: Data and Codes to replicate the results reported in the paper
DOI: 10.17632/hnbc8np44v
title: Published Journal of Studies in Islam and Psychology; No. 21

description: The philosophy of psychology with a critical outlook from the perspective of Islam;
 The uses of psychology in the service of the Islamic society and its needs;
 The formation of psychology in the Islamic society;
 Psychological analysis of Islamic concepts in areas such as:
 1. Anthropology, such as: banned, impatience, hasty, captious, pious, faithful;
 2. Belief, such as: God, resurrection, Imamate, intercession, Paradise, Hell and ...;
 3. Value, such as: repentance, trust, self-esteem, mental relaxation, grief, fear;
 4. Practical instructions of Islam, such as: qisas (retaliation), prayers, inheritance, hajj, khums (one fifth);
 Study of psychological findings from Islamic perspective in terms of critique, confirmation and completion, alternative presentation, presentation of new theory;
DOI: 10.17632/br5rn5yw4w
title: Data for: An uncertainty analysis of the energy intensity of 37 materials used in automobile manufacturing: statistical methods and recommendations

description: Documents containing data on energy intensities of manufactured materials.
DOI: 10.17632/vr5z6hps7n
title: Acceleration sensor data

description: In the shaking table test, the data of the acceleration sensor and the data of the table acceleration sensor are used
DOI: 10.6084/m9.figshare.25429276.v1
title: Diabetes 130-US hospitals for years 1999-2008 Data Set Fairlearn

description: Preprocessed version available from https://fairlearn.org/v0.10/api_reference/generated/fairlearn.datasets.fetch_diabetes_hospital.html, downloaded using this fairlearn functionality on the above link on 15 Mar 2024.It is stored here for convenience of ehrapy users.
DOI: 10.17632/4wfz6p5mkw
title: Worsening renal function (WRF) in hospitalized patients with systolic heart failure: prevalence and risk factors 

description: Materials and Methods: In this cross-sectional study, data from medical records of 347 hospitalized patients diagnosed with HFrEF from 2019 to 2020, admitted to Tabriz Shahid Madani Heart Hospital, who met the predefined inclusion criteria, were retrieved. Patients were divided into two groups based on the in-hospital occurrence of WRF. Laboratory tests and para-clinical findings were collected and analyzed using SPSS Version 20.0. Statistical significance was accepted at a P value of <0.05.
DOI: 10.17632/kvwzw7gd72
title: LINF_150017200

description: Protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.9947375.v1
title: Processed Results - DNA

description: Processed DNA Results
DOI: 10.6084/m9.figshare.16574267.v1
title: Clayton et al., Supplemental Methods and Materials

description: Supplemental Methods and Materials
DOI: 10.17632/cbjjncfyj6
title: Data for: Studying the Spatial Temporal Spread of the Citrus tristeza Virus through ODEs and Bernoulli Trials

description: For the years 1989- 1993, data provides whether an observation is a US Sugar Corporation field was infected with CTV. A '1' indicates infection a 0 otherwise. Headers "hor" and "vert" specify the row and column where an observations is located in the field. The headers 89-93 correspond to years 1989- 1993 respectively.
DOI: 10.17632/ngrb4yx7p6
title: Examining the interplay of childhood abuse, bullying, and bullying victimization in middle school students

description: Examining the interplay of childhood abuse, bullying, and bullying victimization in middle school students
DOI: 10.17632/wp8hbh4c4m
title: Women and Property 1885-1889 dataset: North Riding Register of Deeds

description: Research hypothesis was to use the Registers of Deeds for the North Riding of Yorkshire (held at North Yorkshire County Record Office, Northallerton, England) to advance knowledge about women's involvement with property transfer and the wider property market in the 18th & 19th centuries. Registers began in 1736 and ceased in 1970; there are 89 Index Ledgers and 2,328 Deeds Registers. The system for recording data changed in 1885 so one Index Ledger was selected from pre/ post this date and 100 years apart to incorporate impact of Marriage Acts. Stage 1 - Two Index Ledgers were transcribed in full: 1) Index of Lands Vol 9 (1784-90) covers a seven-year period and contains 6,868 unique transactions (31,966 lines); and 2) Index of Lands 1885-1889 covers a five-year period and contains 14,481 unique transactions (52,741 lines). Each line represents a person's name. Core data from Index showed Township, unique reference and names of parties, but the 18th century Index Ledger did not show date of transaction or all parties. To analyse by gender this information was required so was added by using the Deeds Registers. Information from the individual Deeds Registers was then used to add to the core datasets: Stage 2 - The gender of all parties ('male', 'female' and 'not applicable' (for businesses) was added. Stage 3 - The usual residence, occupation (if any), marital status and any details of family relationships or inheritance rights of every women was added. Stage 4 - The 18th century dataset was then reduced to a five-year period covering 1785-1789 ONLY to provide a direct comparison with the 19th century dataset. Comparative analysis by: gender, marital status and number of transactions. Each transaction has a unique reference number but can contain multiple parties and cover more than one township. To identify the true number of transactions, the data had to be controlled for these factors. A control for uniqueness was also required for those individuals and organisations involved in multiple transactions and to avoid assuming that everyone with the same name was actually the same person. Where women were involved, additional data e.g. marital status, residence or family relationships was used to differentiate between like women. 1785-1789 findings include: distinctive patterns of female property involvement by gender and marital status. Married women represent more than 50% of female transactions despite having little, if any, legal status (coverture). Although 2,086 women transacted during this period, only 1.39% did so without husband's involvement; this increased to 45.47% by 1885-1889 period, reinforcing that Married Women's Property Acts were beginning to make an impact, treating married women as if 'feme sole'. More parity of involvement across marital status groups in 1885-1889 data, with spinsters' involvement increasing the most (from 17.58% to 31.37%). 1885-1889 dataset includes additional analysis by type of transaction and by township.
DOI: 10.6084/m9.figshare.23535339.v1
title: Analysis of decoding graph.

description: Analysis of decoding graph.
DOI: 10.17632/57fsdkv6gh
title: Metabolomic profile of human plasma samples from control subjects and patients with heart failure with reduced ejection fraction.

description: Targeted metabolomics was employed to investigate the metabolic alterations in patients with heart failure with reduced ejection fraction (HFrEF). HFrEF is a complex cardiovascular condition where the heart is unable to pump blood effectively, failing to meet the body's metabolic demands. Despite optimal medical therapy, HFrEF patients remain at high risk for adverse outcomes. 

To characterize the metabolic phenotype of HFrEF, we conducted a targeted plasma metabolomics analysis on samples from a cross-sectional exploratory study within a cohort from the Montreal Heart Institute. This cohort included 132 subjects, comprising 61 HFrEF patients and 71 control subjects. A total of 71 metabolites were measured, including standard clinical markers such as glucose, total cholesterol, HDL-cholesterol, LDL-cholesterol, triglycerides, and free fatty acids. Energy-related metabolites, such as lactate, pyruvate, and intermediates of the citric acid cycle (citrate, fumarate, and malate), were also profiled. Furthermore, 53 acylcarnitines were quantified, covering short-chain (C3-C5), medium-chain (C6-C12), long-chain (C14-C18), hydroxylated, and dicarboxylic species. Detailed metadata including group labels, age, sex, and clinical variables for each sample is also provided.

The raw metabolomics dataset is available upon request.
DOI: 10.17632/hd9k96dtw9
title: Data for: Petrology, geochemistry and petrogenesis of the Carboniferous arc-related volcanism in SW Bogda Mountain, Northwest China, and its implications for regional tectonics

description: Supplementary data for the manuscript from SEM-EDS analyses, EMP analyses, whole rock geochemistry analyses, reference for age correlations and supplementary figure of rock classifications diagrams around Junggar basin is uploaded as a data base for future reference.