cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m1vc0/9
title: Sequence_data_min20

description: All ipyrad outfiles for the entire V. nudum complex + outgroups with all loci shared across at least 20 individuals
DOI: 10.5061/dryad.mk3tj78/1
title: wing.morpho

description: Dataset that accompanies: Decker, LE; Soule, AJ; de Roode, JC; Hunter, MD, 2018ms. Phytochemical changes in milkweed induced by elevated CO2 alter wing morphology but not toxin sequestration in monarch butterflies. Functional Ecology. We examined the indirect effects of elevated CO2 on toxin sequestration and flight morphology of the monarch butterfly mediated by plant quality. We measured the concentration of cardenolides sequestered by the monarchs fed plants grown under ambient or elevated CO2 and also examined aspects of butterfly wing morphology.
DOI: 10.5061/dryad.nn08r1c/1
title: Anonymous data for primary and secondary outcomes

description: This is an anonymous data set (no transaction key available - is deleted) for the primary and secondary outcomes. The data set is made ready for Stata 13 (Statacorp, College station, TX USA)
DOI: 10.5061/dryad.p3378c3/1
title: README

description: README file
DOI: 10.5061/dryad.p3378c3/2
title: Hybrid_Trait_Data

description: Field-based trait data
DOI: 10.5061/dryad.p3378c3/3
title: Hybrid_Envi_Data

description: Field environmental data
DOI: 10.5061/dryad.p3378c3/4
title: Greenhouse_Data

description: Greenhouse trait data
DOI: 10.5061/dryad.p3378c3/5
title: src

description: zip folder containing R code and JAGS model files
DOI: 10.5061/dryad.p88b8v8/18
title: S7Fig

description: Effect of Trial-By-Trial adaptation for directions with significant Mutual Information modulation
DOI: 10.5061/dryad.p88b8v8/19
title: S8Fig

description: Correlation of CS activity in trial n and saccade amplitude in trial n
DOI: 10.5061/dryad.p88b8v8/20
title: S9Fig

description: Timing of significant SS modulation analogous to Fig 3C
DOI: 10.5061/dryad.p88b8v8/21
title: S10FigA

description: Well isolated Complex Spike and Simple Spike recording from the Purkinje Cell layer.
DOI: 10.5061/dryad.p88b8v8/22
title: S10FigB

description: Example of Complex Spike observed in isolation from Simple Spikes, arguably recorded further away from the cell body in the molecular layer.
DOI: 10.5061/dryad.p88b8v8/23
title: S10FigC

description: Example of a less well isolated Purkinje cell.
DOI: 10.5061/dryad.p88b8v8/24
title: S10FigD

description: Example of the number of spikelets per Complex Spike unit as function of its duration.
DOI: 10.5061/dryad.p88b8v8/25
title: S11FigA

description: Mean Complex Spike duration for the short (2 ms to 7 ms), the medium (3 ms to 8 ms) and the long (3 ms to 12 ms) Complex Spike durations.
DOI: 10.5061/dryad.pk27cd0/1
title: Survey Data

description: Responses to the Survey
DOI: 10.5061/dryad.pk27cd0/2
title: Usability Evaluation Data

description: Dashboard usability evaluation data
DOI: 10.5061/dryad.rd1df0c/1
title: Gymnopus neobrevipes and related taxa ITS sequences

description: Aligned Fungal ITS sequences for two new taxa within Gymnopus and PhyML trees
DOI: 10.5061/dryad.rf3664q/3
title: Rhizobia OTU dataset

description: All hosts with information on number of rhizobia OTUs are included along with number of introduced ranges, latitude of native range, annual, number of human uses, number of sequences, area of native ranges, unifrac score, and unifrac categories (split into int=similar and diff=different).
DOI: 10.5061/dryad.s3h9r6j/6
title: SuppFig1_RecoveryVSGenomeSize

description: Supplemental figure showing the relationship between genome size and gene recovery rate using the Angiosperms353 target capture set on 42 angiosperm species.
DOI: 10.5061/dryad.s3h9r6j/7
title: Angiosperms353 Gene Annotations

description: All genes in the Angiosperms353 target capture set annotated using Arabidopsis orthologs.
DOI: 10.5061/dryad.sc983fc/1
title: data

description: Data from Milleret et al. Ecology and Evolution (Habitat segregation between brown bears and gray wolves in a human-dominated landscape)
DOI: 10.5061/dryad.v6g985s/1
title: estimated_dw

description: This file contains the estimated dry weight for all individual macroinvertebrates collected across 25 streams in New Zealand. Below are the column names and a brief description of them. site = Site name; character string. surber = Surber sample that individual was collected in (s1, s2, or s3). linear_meas = linear measurement of the individual in millimeters. dw = estimated dry weight of individual in units of grams. FFG = functional feeding group; CB = collector browser, G = grazer, P = predator, FF = filter feeder, S = shredder, O = omnivore, NA = unknown.
DOI: 10.5061/dryad.v6g985s/2
title: gradient_chemistry

description: This file contains chemical data for 25 streams in New Zealand across an acid mine drainage gradient. pH and conductivity were recorded in the field using standard meters (YSI 550A & YSI 63). Element concentrations were estimated using ICPMS analysis of a filtered (pore size = 0.45 um) water sample collected in the field. site = site name. cond = specific conductivity (microsiemens per centimeter). Elemental concentrations are reported in micrograms per liter.
DOI: 10.5061/dryad.5cj0ms6/1
title: mixxed cropp-agronomy journal

description: Data for statistical analyses
DOI: 10.5061/dryad.5d4mb06/1
title: Alouatta genotypes

description: This file contains ddRADseq genotype data at 6,415,368 sites for individuals sampled in the wild from the Alouatta palliata x Alouatta pigra hybrid zone and surrounding allopatric parental populations. We merged overlapping read pairs, aligned merged and unmerged reads to the Alouatta palliata genome assembly (PVK00000000) using BWA-MEM. We called variants using samtools mpileup and bcftools call, removed SNPs within 5bp of an indel and retained variants with a minimum quality score of 20.
DOI: 10.5061/dryad.60b9p56/1
title: Genotypes_CAN-W-D_SCT-W-D

description: This VCF file includes the genotypes of four populations used in this study.
DOI: 10.5061/dryad.68fr52p/1
title: Metabolic expansibility data

description: Species, physiological, and environmental data. See README file for explanation of columns. R code to run the analysis is available here: https://github.com/lbuckley/tnz.
DOI: 10.5061/dryad.778hc71/1
title: The master data file for AJB-D-18-00217R1

description: This is a .xlsx file containing the raw and metadata from our study. The first sheet (AJB-D-18-00217R1_Field_2016_raw) contains field observations of ant-seed dispersal distances and rates for endemic-widespread Trillium pairs across 9 study sites. The second sheet (AJB-D-18-00217R1_Cafeteria_raw) contains data from laboratory cafeteria experiments of ant preference. The third sheet (Cafeteria_metadata) contains metadata on the cafeteria raw data. The fourth sheet (Field_metadata) contains metadata on the field raw data.
DOI: 10.5061/dryad.77r93d5/10
title: Pogo_stats.40ind.Po.nodup

description: RADtag sequence statistics of population pair Po
DOI: 10.5061/dryad.77r93d5/3
title: BEL_bayescan

description: Results of the BayeScan analysis of population pair Be
DOI: 10.5061/dryad.77r93d5/4
title: FRA_bayescan

description: Results of the BayeScan analysis of population pair Fr
DOI: 10.5061/dryad.77r93d5/5
title: POR_bayescan

description: Results of the BayeScan analysis of population pair Po
DOI: 10.5061/dryad.77r93d5/6
title: SPA_bayescan

description: Results of the BayeScan analysis of population pair Sp
DOI: 10.5061/dryad.77r93d5/7
title: dadiResults

description: Results of the dadi analysis
DOI: 10.5061/dryad.77r93d5/8
title: Pogo_stats.40ind.Be.nodup

description: RADtag sequence statistics of population pair Be
DOI: 10.5061/dryad.77r93d5/9
title: Pogo_stats.40ind.Fr.nodup

description: RADtag sequence statistics of population pair fr
DOI: 10.5061/dryad.7p7s18p/1
title: Kija et al_data

description: Larvae and adult counts collected during the semi-field experiment described in Kija et al. All counts are of An. arabiensis.
DOI: 10.5061/dryad.92gg5v0/1
title: PostDiapause-silkDensity

description: This dataset includes measurements of up to two silk samples per nest A and B either under x500 magnification or x1000magnification under an electron microscope after platinum coating
DOI: 10.5061/dryad.92gg5v0/2
title: Pre-diapause-SilkDensity

description: This dataset includes measurements of one silk sample per nest   under x500 magnification and x1000magnification under an electron microscope after platinum coating
DOI: 10.5061/dryad.92gg5v0/3
title: InhibitionArea-Silk-Oct2017

description: This dataset includes measurement of inhibition halos or growth area of silk-associated microbes in control or pathogen-inoculated plates in the lab
DOI: 10.5061/dryad.92gg5v0/4
title: Bombyx

description: Protein composition of the silk and silk gland samples based on comparison with the Bombyx peptide database
DOI: 10.5061/dryad.92gg5v0/5
title: MCINX

description: Protein composition of the silk and silk gland samples by comparison with the Glanville fritillary protein database
DOI: 10.5061/dryad.99p2308/10
title: JUL2012_2_H2O_DNApool

description: Collection of prey DNA sequences recovered from prey field water to be compared to those prey characterized in D. gegenbauri. Feeding studies were conducted in July 2012 (research cruise 2).
DOI: 10.5061/dryad.99p2308/11
title: WILD2011_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from wild-captured doliolids, Dolioletta gegenbauri. Doliolids were collected in 2011.
DOI: 10.5061/dryad.99p2308/7
title: JUL2012_1_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from laboratory-raised, captive-fed Dolioletta gegenbauri. Feeding studies were conducted in July 2012 (research cruise 1).
DOI: 10.5061/dryad.99p2308/8
title: JUL2012_1_H2O_DNApool

description: Collection of prey DNA sequences recovered from prey field water to be compared to those prey characterized in D. gegenbauri. Feeding studies were conducted in July 2012 (research cruise 1).
DOI: 10.5061/dryad.99p2308/9
title: JUL2012_2_Doliolid_GUT_DNApool

description: Collection of prey DNA sequences recovered from laboratory-raised, captive-fed Dolioletta gegenbauri. Feeding studies were conducted in July 2012 (research cruise 2).
DOI: 10.5061/dryad.bh14n51/10
title: matched data1

description: Data for meta-analysis 1: offspring size and temperature
DOI: 10.5061/dryad.bh14n51/11
title: matched tree1

description: Tree for meta-analysis 1: offspring size and temperature
DOI: 10.5061/dryad.bh14n51/4
title: Bugula_Repmeasures

description: Bugula neritina metabolic rate repeated measures analysis data
DOI: 10.5061/dryad.bh14n51/5
title: Danio_rerio_DTMR

description: R markdown file PDF for Danio rerio: temperature dependence of development time and metabolic rate
DOI: 10.5061/dryad.bh14n51/6
title: Danio_DT

description: Danio rerio development time with temperature data
DOI: 10.5061/dryad.bh14n51/7
title: Danio_MR

description: Danio rerio metabolic rate with temperature data
DOI: 10.5061/dryad.bh14n51/8
title: Danio_Repmeasures

description: Danio rerio metabolic rate repeated measures analysis data
DOI: 10.5061/dryad.bh14n51/9
title: Offspring size and temperature meta-analysis

description: R file for meta-analysis 1: offspring size and temperature
DOI: 10.5061/dryad.cb5cf20/1
title: Supplemental table 1

description: Raw statistics
DOI: 10.5061/dryad.cb5cf20/2
title: Dark moving bar

description: Clip of zebra finch exposed to moving wire during the dark phase
DOI: 10.5061/dryad.cb5cf20/3
title: Light Moving Bar

description: Video clip of zebra finch exposed to moving wire during the light phase
DOI: 10.5061/dryad.cn7mq57/1
title: biomass data
DOI: 10.5061/dryad.cn7mq57/2
title: root length data
DOI: 10.5061/dryad.hh42t4j/37
title: w501xII2P5_1
DOI: 10.5061/dryad.hh42t4j/38
title: w501xII2P5_2
DOI: 10.5061/dryad.hh42t4j/39
title: w501xII2P5_3
DOI: 10.5061/dryad.hh42t4j/40
title: w501xII2P5_4
DOI: 10.5061/dryad.hh42t4j/41
title: w501xII2P7_1
DOI: 10.5061/dryad.hh42t4j/42
title: w501xII2P7_2
DOI: 10.5061/dryad.hh42t4j/43
title: w501xII2P7_3
DOI: 10.5061/dryad.hh42t4j/44
title: w501xII2P7_4
DOI: 10.5061/dryad.hh42t4j/45
title: w501xII2P7_5
DOI: 10.5061/dryad.kb505nc/1
title: "neotrop", "bv" and "tara" datasets used in the evaluation part of the main paper.

description: Reference trees/alignments, as well as query data, for the "neotrop", "bv" and "tara" data sets. Made available with permission from the respective authors (see contained readme files for citation information!).
DOI: 10.5061/dryad.kb505nc/2
title: Supplement PDF to the main text

description: Supplementary information.
DOI: 10.5061/dryad.kf6q10b/1
title: DNA sequence alignments

description: DNA sequence alignments in FASTA format. These alignments were used to construct the phylogeny of the flora of Northeastern North America and adjacent Canada.
DOI: 10.5061/dryad.kf6q10b/2
title: thresholding

description: Example script to transform MAXENT models to binary presence-absence matrices.
DOI: 10.5061/dryad.m1vc0/1
title: Figure S1. Heatmap of Shared Data Across All Pairs of Individuals

description: Figure S1. Heatmap of shared data across all pairs of individuals shows no systematic biases in missing data. Darker blues indicated more shared loci while lighter blues indicate fewer. Individuals are arranged phylogenetically, and the total number of loci per individual is displayed along the top of the chart as a bar graph.
DOI: 10.5061/dryad.m1vc0/10
title: Sequence_data_files_min40

description: All ipyrad outfiles for the entire V. nudum complex + outgroups with all loci shared across at least 40 individuals
DOI: 10.5061/dryad.m1vc0/11
title: morphological_trait_data

description: Table with all measured morphological traits.
DOI: 10.5061/dryad.m1vc0/2
title: Figure S2. Results of Hierarchical STRUCTURE Analysis

description: Figure S2. Hierarchical STRUCTURE analysis identified clusters within each of the three major lineages. Colors indicate posterior probability of assignment of each individual to a particular cluster based on the combination of 10 replicate runs. The number of clusters (K) for each analysis is displayed at the top of each bar graph.
DOI: 10.5061/dryad.m1vc0/3
title: Figure S3. Phylogenetic Results

description: Figure S3. Similar phylogenetic trees were inferred across datasets and analysis methods. a) IQ-TREE min10 data set, b) IQ-TREE min20 data set, c) IQ-TREE min50 data set, d) RAxML min10 data set, e) RAxML min20 data set, f) RAxML min40 dataset, g) RAxML min50 data set, h) tetrad min10 data set, i) tetrad min20 data set j) tetrad min40 data set, k) tetrad min50 data set.
DOI: 10.5061/dryad.m1vc0/4
title: Figure S4. Phylogenetic Network Inferred with SplitsTree

description: Figure S4. Phylogenetic network inferred with SplitsTree4 (Hudson and Bryant 2006) showing relationships for all individuals in the V. nudum complex based on the min40 dataset.
DOI: 10.5061/dryad.m1vc0/5
title: Figure S5. D-Statistic Tests of Introgression

description: Figure S5. D-statistic tests find no evidence of introgression between the red and blue clades. A-F) Phylogeny displays the taxa for each test with the grey arrows indicating potential introgression. The graph to the right of each tree shows a histogram of z-scores for 100 replicate tests with different individuals sampled for each non-focal taxon. Higher Z-scores (lower p-values) are located on the right of each graph. Grey dotted line is at p=.01, black dotted line is at p=.01 with a bonferroni correction for 100 tests.
DOI: 10.5061/dryad.mr31757/1
title: Data for model set 1: Parasite-mediated selection

description: Data used for model set 1 (parasite-mediated selection). See table S1 in associated article for further information.
DOI: 10.5061/dryad.mr31757/2
title: Data for model set 2: MHC-associated mating

description: Data used for model set 2 (MHC-associated mating) and data used for Fisher's Exact test including mating status and MHC supertype presence. See table S1 in associated article for further information.
DOI: 10.5061/dryad.mr31757/3
title: Data for model set 3: Signals of MHC genotype

description: Data used for model set 3 (signals of MHC genotype) and Fisher's exact tests. See table S1 in associated article for further information.
DOI: 10.5061/dryad.mr31757/4
title: Heterozygosity and relatedness data

description: Data use to test for correlations between MHC variables and heterozygosity and relatedness. See associated article for further details.
DOI: 10.5061/dryad.p88b8v8/26
title: S11FigB

description: Average CS duration for the four trial periods distinguished
DOI: 10.5061/dryad.p88b8v8/27
title: S11FigC

description: Duration of CS fired during baseline fixation as function of duration of the same CS unit when generated in the presence of a secondary visual error.
DOI: 10.5061/dryad.p88b8v8/28
title: S11FigD

description: Change of saccade amplitude from trial n-1 to trial n as function of Complex Spike duration in the secondary visual error interval of Fig 1B in trial n-1.
DOI: 10.5061/dryad.p88b8v8/29
title: S12Fig

description: Simple Spike density functions prior to primary saccade onset in trial n for the three different error conditions (outward, inward, no error) in trial n-1. Separated according to the correlation in Fig4B.
DOI: 10.5061/dryad.r9n6hg4/1
title: SOC modeling & Eddy covariance

description: This excel file contains calculations for soil organic carbon modeling and comparison with eddy covariance measurements for three field sites, along with a number of other types of related data analysis.
DOI: 10.5061/dryad.rv38cp4/1
title: RJF data for PLoS one_136 individuals_26 loci_12072018

description: Allelic data of 136 free-ranging wild red junglefowls with 26 polymorphic STRs
DOI: 10.17632/2h5tvzty6h.1
title: Data for: Demonstrating the (In)Effectiveness of State Legislative Reforms

description: These are the datasets and R Scripts used for the attached article.
DOI: 10.17632/by97jvd34h.1
title: Data for: Cropping systems are homogenized by off-farm income – Empirical evidence from small-scale farming systems in dry forests of southern Ecuador

description: VARIABLES used in the regresion model
DOI: 10.17632/pxyzbg2h9k.1
title: Data for: Chlorhexidine-impregnated gel dressing compared to transparent polyurethane dressing in the prevention of catheter-related infections in critically ill adult patients: a randomized controlled trial

description: Data Base
DOI: 10.5061/dryad.18cg032/1
title: Alignment used to produce Figure 1 - RAxML tree

description: Information of loci partitions
mtdna_12S= 1-492;
mtdna_16S= 493-1071;
mtdna_cytb = 1072-2159;
ncdna_bdnf= 2160-2834;
ncdna_cmos= 2835-3415;
ncdna_nt31= 3416-3943;
DOI: 10.5061/dryad.1g71qj2/1
title: Image classifications

description: Table shows the list of images used in our experiment (image ID), and for each image the trial and category that is was used in, the total number of experts that classified it as 'bobcat', 'lynx', and 'unknown', and the individual classifications of each expert (1 through 27).
DOI: 10.5061/dryad.1nm650h/1
title: forest_data_2010_pub

description: Data on mountain birch forest damage and recovery in August 2010.
DOI: 10.5061/dryad.1nm650h/2
title: forest_data_2016_pub

description: Data on mountain birch forest damage and recovery in August 2016.
DOI: 10.5061/dryad.1nm650h/3
title: Rscript_all_analyzes_pub

description: R script to reproduce all analyzes and plots reported in Vindstad et al. "Can novel pest outbreaks drive ecosystem transitions in northern-boreal birch forest?"
DOI: 10.5061/dryad.1nm650h/4
title: README. Explanation of variables

description: Explanation of the variables found in the datafiles forest_data_2010_pub.txt and forest_data_2016_pub.txt
DOI: 10.5061/dryad.1pj4302/1
title: fitness_data_scordato2018

description: File including fitness and phenotype data
DOI: 10.5061/dryad.1pj4302/2
title: Playback_data_Scordato2018

description: Responses to playback experiments
DOI: 10.5061/dryad.1sj40/1
title: Movimento_Paleosuchus_Zilca Campos

description: data file are locations (movements) of the two species of Paleosuchus palpebrosus (pp) e Paleosuchus trigonatus (pt) in the hydroelectric dam, Brazilian Amazonia. radio= individual; svl= snout vent-lenght (cm)
DOI: 10.5061/dryad.1v72g43/1
title: lidar data for each CARBONO field plot

description: Lidar data collected at La Selva Biological Station, Costa Rica, in September and October 2009 using the Optech 3100EA sensor. A separate file is included for lidar data over each 0.5 ha field plot. Each data file is labeled with the plot ID but is not georeferenced to protect the exact location of field plots.
DOI: 10.5061/dryad.1v72g43/2
title: Litter production data for CARBONO plots

description: Biweekly litterfall data for the CARBONO plot network in La Selva, Costa Rica. Original data and detailed methods are available at www.ots.ac.cr/carbonoproject. Data are day-adjusted values per plot from the 'TOTLITDATA' tab of original data files.
DOI: 10.5061/dryad.27635v2/1
title: SupplementaryMaterialData_General perceptual-cognitive abilities_Age and position in soccer

description: Presented are data of General perceptual-cognitive abilities: Age and position in soccer. Analyzed are age and position groups, correct responses (CR), errors (E), time deviation (TD), direction deviation (DD), visual reaction time (VRT) and acoustic reaction time (ART).
DOI: 10.5061/dryad.2p7qb12/1
title: trait_measurements

description: Measures of three traits for MA lines and corresponding control lines ('MA_control'), and for lines derived from an outbred population ('standing'). The traits are male mating success ('male') female fecundity ('female') and larval viability ('viability'). Female fecundity measures are egg counts. Male mating success measures are number of females inseminated by focal males relative to competitors (total = focal + competitor). Viability measures are number of focal adults that developed relative to competitors (total = focal + competitor).
DOI: 10.5061/dryad.3g9f7/1
title: Spider Field Data

description: Spider glide index, mass, and wing area
DOI: 10.5061/dryad.5qj7h09/1
title: Data from: Inferring Continuous and Discrete Population Genetic Structure Across Space

description: This repo contains a snapshot of the data files, analyses, and code for the method conStruct at the time of publication.
DOI: 10.5061/dryad.626tf4f/1
title: Z-Scores &gt;250, All Chromosomes (hg19) from ZHUNT3

description: Z-Scores were determined using ZHUNT3 Champ, P. C., S. Maurice, et al. (2004). "Distributions of Z-DNA and nuclear factor I in human chromosome 22: a model for coupled transcriptional regulation." Nucleic acids research 32(22): 6501-6510. The input was from the  hg19 build and only Z-Scores&gt;250 are present
DOI: 10.5061/dryad.77r93d5/11
title: Pogo_stats.40ind.Sp.nodup

description: RADtag sequence statistics of population pair Sp
DOI: 10.5061/dryad.7b3c73k/1
title: Floral spectral reflectance of H. fulva, H. citrina and hybrids

description: This file contains reflectance spectra in the central part and the peripheral part of tepals of H. fulva, H. citrina, and their F2 hybrids.
DOI: 10.5061/dryad.7b3c73k/2
title: Floral traits and pollinator visitations in experiment 1
DOI: 10.5061/dryad.7b3c73k/3
title: Floral traits and pollinator visitations in Experiment 2
DOI: 10.5061/dryad.7b3c73k/4
title: Floral traits and pollinator visitations in Experiment 3
DOI: 10.5061/dryad.7h083rd/1
title: Supplement