cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22565170.v1
title: MERFISH datasets

description: The MERFISH dataset is a imaging-based spatial transcriptomics. Among all slices, 5 slices were expert-annotated, they contains the number of cells: 5,488 (sample MERFISH_0.04), 5,557 (sample MERFISH_0.09), 5,926 (sample MERFISH_0.14), 5,803 (sample MERFISH_0.19), 5,543 (sample MERFISH_0.24).
DOI: 10.4121/12693254.v4
title: Synchronized high-resolution bed-level change and biophysical data from 10 marsh–mudflat sites in northwestern Europe

description: Tidal flats provide valuable ecosystem services such as flood protection and carbon sequestration. Erosion and accretion processes govern the eco-geomorphic evolution of intertidal ecosystems (marshes and bare flats), and hence substantially affect their valuable ecosystem services. To understand the intertidal ecosystem development, high-frequency bed-level change data are thus needed. However, such datasets are scarce due to the lack of suitable methods that do not involve excessive labour and/or instrument cost. By applying newly-developed Surface Elevation Dynamics sensors (SED-sensors), we obtained unique high-resolution daily bed-level change data sets in the period 2013-2017 from 10 saltmarsh sites situated in the Netherlands, Belgium and Britain in contrasting physical and biological settings. At each site, multiple sensors were deployed for 9-20 months to ensure sufficient spatial and temporal coverage of highly variable bed level change processes. The bed level change data are provided with synchronized hydrodynamic data, i.e. water level, wave height, tidal current velocity, and medium grain size (D50) as well as (for some sites) chlorophyll-a level and organic matter content of the surface sediment. This dataset has revealed diverse spatial morphodynamic patterns over daily to seasonal scales, which are valuable to theoretical and model development. On the daily scale, this dataset is particularly instructive as it includes a number of storm events, the response to which can be detected in the bed level change observations. Such data are rare but useful to study tidal flat response to highly energetic conditions.
DOI: 10.6084/m9.figshare.12597755.v1
title: Mining Coronavirus (COVID-19) Posts in Social Media

description: A short description of the files: <br>- tweet_ids.txt.zip: Conatins the tweet ids mentioned in the paper. It contains 9 million tweets tweet id per line, published between Jan 27 and April 20, 2020, see the paper below for more details- bert-base-uncased-corona.zip: The pre-trained BERT model discussed in the paper. We used the pytorch implementation of BERT, available at huggingface Github.
DOI: 10.6084/m9.figshare.3833715.v1
title: A Spatio-Temporal Comparison of suicide mortality in Parana state, Brazil

description: Databases used to perform the spatial analysis and baysen network of mortality by suicide in the state of Paraná.
DOI: 10.6084/m9.figshare.c.3918607_d5.v1
title: Additional file 5: Table S4. of Widespread activation of antisense transcription of the host genome during herpes simplex virus 1 infection

description: Nanostring probes. (XLSX 34 kb)
DOI: 10.17632/gy7kcvf98b
title: A machine learning model for multi-class classification of quenched and partitioned steel microstructure type by the k-nearest neighbor algorithm

description: QP steel microstructure type dataset 1. Resource reference list 2. Raw dataset 3. Dataset compatible to program code 4. Program code (compatible in ipynb platform)
DOI: 10.17632/zpmd8krs2b
title: Scopus bib file

description: Scopus raw data in bib and excel format
DOI: 10.6084/m9.figshare.11848965.v5
title: Raw NanoSIMS data for symbiont enrichment from heterotrophy from Intracellular competition for nitrogen controls dinoflagellate population density in corals

description: The density of dinoflagellate microalgae in the tissue of symbiotic corals is an important determinant for health and productivity of the coral animal. Yet, the specific mechanism for their regulation and the consequence for coral nutrition are insufficiently understood due to past methodological limitations to resolve the fine-scale metabolic consequences of fluctuating densities. Here, we characterized the physiological and nutritional consequences of symbiont density variations on the colony and tissue level in <i>Stylophora pistillata</i> from the Red Sea. Alterations in symbiont photophysiology maintained coral productivity and host nutrition across a broad range of symbiont densities. However, we demonstrate that density-dependent nutrient competition between individual symbiont cells, manifested as reduced nitrogen assimilation and cell biomass, likely creates the negative feedback mechanism for symbiont population growth that ultimately defines the steady-state density. Despite fundamental changes in symbiont nitrogen assimilation, we found no density-related metabolic optimum beyond which host nutrient assimilation or tissue biomass declined, indicating that host nutrient demand is sufficiently met across the typically observed range of symbiont densities under ambient conditions.
DOI: 10.6084/m9.figshare.19203377.v4
title: Data set for weather, development stage and yield

description: Weatherdata.txt:Weather data 2012 - 2016 from locations in Denmark, Finland, Lithuania, Norway and Finland.<br>Weather data description.docDescription of the weather data included in Weatherdata.xlsx.<br><br>Development stage.xlsx:<br>Development stages and corresponding average dates for winter and spring wheat in Denmark, Finland, Lithuania, Norway and Sweden<br><br>Weather stations.xlsx:Weather station in Denmark, Finland, Lithuania, Norway and Sweden and their corresponding regions.<br><br>Yield.xlsx:Yield data from fungicide efficacy trials conducted in Denmark, Finland, Lithuania, Norway and Sweden 2012-2016<br><br>
DOI: 10.6084/m9.figshare.20745874.v1
title: Supplementary Material for: Outcomes of Neonates with a 10-min Apgar Score of Zero: A Systematic Review and Meta-Analysis

description: <b><i>Introduction:</i></b> The Apgar score is a standardized method of assessing the primary adaptation and clinical status of a neonate after birth. Our objective was to systematically review and meta-analyze the survival and the survival without moderate-to-severe neurodevelopmental impairment (NDI) of neonates with a 10-min Apgar score of zero. <b><i>Methods:</i></b> Six electronic databases were searched for reports published until November 2021 of neonates with a 10-min Apgar score of zero. Risk of bias was assessed using the Newcastle-Ottawa scale for cohort studies and the Joanna Briggs Institute Critical Appraisal Checklist for case series/reports. Meta-analyses of the proportion of outcomes were conducted using a random-effects model for studies published after year 2000 and reporting &gt;5 neonates. Meta-regression using the median year of the study period and subgroup analyses by treatment with therapeutic hypothermia and by gestational age were conducted. <b><i>Results:</i></b> Twenty-eight studies of 820 neonates with moderate risk of bias were included. Survival was 40% (95% confidence interval 30–50%, 16 studies, 646 neonates, <i>I</i><sup>2</sup> = 83%), and it increased by 2.3% per year (95% CI 1.3–3.2%, <i>p</i> &lt; 0.001). Survival without moderate-to-severe NDI was 19% (95% confidence interval 11–27%, 13 studies, 211 neonates, <i>I</i><sup>2</sup> = 62%). Survival was higher for neonates who received therapeutic hypothermia and for those with a gestational age ≥32 weeks compared to &lt;32 weeks. <b><i>Conclusion:</i></b> Approximately 2 in 5 neonates with a 10-min Apgar score of zero survived, and 1 in 5 survive without moderate-to-severe NDI survived. Survival has improved over the years, especially since the era of therapeutic hypothermia.
DOI: 10.6084/m9.figshare.28577471.v1
title: VPS data - Behavioural impacts of MS-222 and electro-immobilization on wild fish assessed using a whole lake telemetry system

description: VPS telemetry data used for statistical analyses for largemouth bass (LMB) and northern pike (NPK).
DOI: 10.6084/m9.figshare.22003970.v2
title: Dataset for ICSE2023

description: "questionnaire.pdf" records the questions used in the online questionnaire survey. "interview_script.pdf" records the questions used in the interviews. "log2-log2_questionaires.docx" is the survey questionaire of Microsoft's Log2 project (Reference[7]).
DOI: 10.6084/m9.figshare.28124159.v1
title: Soil data and machine learning code

description: This is a publicly available dataset containing soil data and random forest model code for research.
DOI: 10.6084/m9.figshare.6865415.v1
title: Phylogenetic analysis of symbiont transmission mechanisms reveal evolutionary patterns in thermotolerance and host specificity that enhance bleaching resistance among vertically transmitted <i>Symbiodinium</i>

description: Vertical transmission of <i>Symbiodinium</i> symbionts between generations of coral hosts has been hypothesized to result in superior matches between host and symbiont physiologies, and to form holobionts that are generally more resistant to thermal stress. Alternatively, horizontal transmission, with its greater potential for assembling physiologically diverse associations as well as being capable of substituting symbionts in response to stimuli, may result in holobionts that are generally more resistant to thermal stress. While the most common mode of transmission among Scleractinia–<i>Symbiodinium</i> symbioses is horizontal, mixed-modes transmission only occurs in vertically transmitting corals, allowing the maintenance of highly specialized associations across generations as well as transiently critical relationships. These advantages of mixed-modes transmission may serve to rescue otherwise susceptible corals, or alternatively, reinforce otherwise resistant corals, depending upon the other attributes of vertically transmitted <i>Symbiodinium</i> phylotypes. Here we ask if vertically transmitted symbionts tend to be more thermotolerant and specific. Because significant relationships between traits can be overestimated or obscured by patterns of shared evolutionary history, we inferred a novel molecular phylogeny for 97 <i>Symbiodinium</i> phylotypes representing clades A–F to evaluate the relationship between phylotype transmission-mode, thermotolerance and specificity to coral hosts. Thermotolerance and specificity have been independently derived multiple times during the evolutionary history of <i>Symbiodinium</i>, and cannot be predicted by clade membership. The probability of phylotype transmission being predominantly vertical increased by more than 200% across the observed ranges of increase of thermotolerance and specificity, even though phylotype thermotolerance is not correlated with host specificity. Higher thermotolerance and specificity of vertically transmitted <i>Symbiodinium</i> may contribute to robust bleaching resistance among vertically transmitting corals that could reinforce the potential benefits of mixed-modes transmission.
DOI: 10.6084/m9.figshare.8313530.v5
title: ChinaCropPhen1km: A high-resolution crop phenological dataset for three staple crops in China during 2000-2015 based on LAI products

description: This dataset provides 1km-grid crop phenological dataset for three main crops (i.e., rice, wheat, and maize) of China from 2000 to 2015. *** The data file is in “.tif" format *** Filename convention: CHN_CropType_KeyPhenologicalStages_Year.tif *** CropType: includes Maize, Wheat, Rice(SR&ER) and Rice(LR), where Rice(SR&ER) represents single-rice and early-rice, Rice(LR) represents late-rice only.*** KeyPhenologicalStages: GR&EM: Green up & Emergence date for wheat; V3: V3 stage for maize; TR: Transplanting date for rice; HE: Heading date for all the crops; MA: Maturity date for all the crops. *** Year: Values from 2000 to 2015
DOI: 10.6084/m9.figshare.1552039.v1
title: Relationship Between Gender and Preferred Method of Note Taking

description: Meta-Data Subjects: 16 participants from Ecology 2050 laboratory 08 were chosen at random and interviewed. Gender of Subject: indicates whether the subject is biologically male or female. Preferred Method of Note Taking: each of the subjects were asked if they preferred to take notes using a laptop or with a pen and paper. Methods The data describes the relationship between gender and preferred method of note taking. Sixteen York University students were interviewed at random during the Ecology 2050 laboratory, section 08. After recording the gender of the subject, each student was then asked if they preferred to take notes using a laptop or a pen and paper. Group Members: Phaeba, Murtuza, Chris
DOI: 10.6084/m9.figshare.19630239.v1
title: Mus_musculus.GRCm38.102.IRLAB20220421.gtf.gz

description: Mouse genome GRCM38/mm10 annotation adapted from Ensembl version 102 with updated V1R, V2R, FPR and OR 3' UTRs and newly identified pseudogenic sequences of V1R, V2R and FPR. <br> This file a raw text file encoded in UTF-8, with Unix newline characters and was gzipped (MD5 sum of the .gz = 4cf9f33d2363a54d3458c2bc08571bf3). The content is a genome annotation in GTF format (https://en.wikipedia.org/wiki/Gene_transfer_format)
DOI: 10.6084/m9.figshare.28593647.v3
title: Aligned FASTA of TLR3s from 10 Species of Teleost

description: <b>FASTA file for TLR3 of 10 species of Teleost fis</b><b>h</b><b>.</b> Sequences were obtained via tBLASTn search against a Danio rerio (zebrafish) TLR3 sequence collected from Alphafold. Sequences were aligned in AliView.
DOI: 10.17632/5hmrm3hjcc
title: Quality governance and carbon emissions

description: We examine the causal link between quality governance indicators and carbon emissions through foreign direct investment in Africa from 1996 to 2020 using the 2SLS – IV regression. We established a positive causal effect of foreign direct investment on CO2 emissions loading from governance quality indicators (voice and accountability, political stability and absence of voice, governance effectiveness, the rule of law, regulatory quality, and corruption) and increase in fossil fuel energy consumption.
DOI: 10.17632/8grv5fzdtr
title: Data and Do file for transmission channels of financial inclusion

description: Panel database containing information for analyzing poverty-financial inclusion linkage along with Stata Do file.
DOI: 10.17632/952fg8gs39
title: Model, Characteristics, and Optimization of Adolescent Physical Health Policy Tools in China

description: Raw Data of The Model, Characteristics, and Optimization of Adolescent Physical Health Policy Tools in China
DOI: 10.17632/gmcj5c5knm
title: Researcher attitudes to work-life integration and mobility

description: This dataset is from an globally representative survey of researchers exploring their attitudes to work-life integration and mobility. The survey was unbranded with the sponsors revealed at the end. 1450 researchers completed the survey. The survey was available in English only.
DOI: 10.17632/r6d8sn2t6b
title: Supplemental Figure 8

description: Supplemental Figure 8: Fitzpatrick skin type III, acute paronychia following treatment with fibroblast growth factor receptor inhibitor, futibatinib. Bilateral thumbnails onycholytic with friability of the skin of the distal fingertip.
DOI: 10.6084/m9.figshare.1553389.v1
title: Carry-Over Effects of Nonbreeding Habitat on Start-to-Finish Spring Migration Performance of a Songbird.

description: This data was used in the following publication: McKinnon, EA, Stanley, CQ, BJM Stutchbury. 2015. Carry-Over Effects of Nonbreeding Habitat on Start-to-Finish Spring Migration Performance of a Songbird. PLOS ONE.
DOI: 10.6084/m9.figshare.28063244.v1
title: test072

description: New data for test072
DOI: 10.6084/m9.figshare.28847828.v2
title: <b>Categorización de creatividad en diseños generados por estudiantes de secundaria</b>

description: Para lograr creatividad se requieren estrategias que fomenten resolución de problemas y expresión de ideas. Aquí, se presenta un estudio sobre la categorización de creatividad en diseños generados por estudiantes de secundaria. Para estimar diferencias en estructura, función e identidad de los diseños, se usó una rejilla basada en el Modelo de Taxonomía del diseño creativo. La cantidad de diseños fue analizada por género y longitudinalmente en el tiempo. Los resultados anuales, mostraron mayor cantidad de diseños clasificados como imitación o creación original en ambos, en general y para cada género por separado, pero la cantidad fue similar al analizar longitudinalmente en el tiempo. Los resultados sugieren que la imitación y creación de diseños requiere que los(as) estudiantes transfieran conocimiento y generen ideas, resaltando la necesidad de fortalecer el pensamiento creativo.
DOI: 10.6084/m9.figshare.28878995.v1
title: Supplementary materials

description: Home range of the white-headed langurs in Guangxi, China
DOI: 10.17632/6jcmyhfhpb
title: Data for: High resolution crustal model of SE Tibet from joint inversion of seismic P-wave travel-times and Bouguer gravity anomalies and its implication for the crustal channel flow

description: Crustal P-wave velocity model of SE Tibet from seismic P-wave travel-times
DOI: 10.17632/d7bn3gt9zz
title: Comparative Investigation on Synthesis, Characterization, Dye Decoloration and Remediation of Nutrients from Industrial Effluent by ZnO Metallic Nanoparticle

description: The present pilot-scale study was focused on synthesis and characterization of metallic nanoparticle (ZnO), decolorization of dyes (Methyl Orange-MO, Rhodamine-RM, Methylene Blue-MB,) using ZnO under two different radiations (UV, Natural Sunlight), and remediation of nutrients (Sulphate, Nitrate, Chromium) from three industrial effluents (Pharma, Inorganic, Mixed) using synthesized metallic nanoparticle under UV & Sunlight, Central Gujarat, India. Dye decoloration (MO) was 0.01, 0.02 & 0.03 gm/L ZnO (1 ppm), Light (6 hours, 100%), Control, 0.01, 0.02 & 0.03 gm/L ZnO (1 ppm), UV (6 hours, 100%); in case of RM, dye decoloration was 0.02 & 0.03 gm/L ZnO (1 ppm), Light (6 hours, 100%), Control, 0.01, 0.02 & 0.03 gm/L ZnO (1 ppm), UV (6 hours, 100%), 0.01, 0.02 & 0.03 gm/L ZnO (2 ppm), UV (6 hours, 100%), 0.02 & 0.03 gm/L ZnO (3 ppm), UV (6 hours, 100%); in case of MB, dye decoloration was Control, 0.01, 0.02 & 0.03 gm/L ZnO (1 ppm), Light (6 hours, 100%), Control, 0.01 & 0.02 gm/L ZnO (1 ppm), UV (6 hours, 100%), 0.01, 0.02 & 0.03 gm/L ZnO (2 ppm, 3 ppm), UV (6 hours, 100%). Mean dye decoloration was observed maximally in MB (91.67%, UV), followed by RM (90.01%, Light), MB (85.63%, Light), MO (67.58%, Light), MO (66.02%, UV) and MO (50.35%, Light). In case of Sulphate, maximum removal (100%) was observed under UV at 0.03 gm/L ZnO compared to 92.08% under Light in Pharma effluent; Nitrate (UV, 100%, 0.03 gm/L ZnO; Light, 98.95%, 0.03 gm/L ZnO, Mixed effluent) and Chromium (Light, 100%, 0.03 gm/L ZnO, Mixed effluent; UV, 100%, 0.03 gm/L ZnO, Pharma & Inorganic effluents). In Mixed effluent (Light), maximum removal of Chromium was reported (100%), followed by Nitrate (98.95%), and Sulphate (65.38%); in Pharma effluent (Light), maximum removal of Sulphate was reported (92.08%), followed by Chromium (88.25%), and Nitrate (20.78%); in Inorganic effluent (Light), maximum removal of Chromium was reported (86.00%), followed by Nitrate (79.80%), and Sulphate (12.23%). In Mixed effluent (UV), maximum removal of Sulphate was reported (94.63%), followed by Nitrate and Chromium (75.00% each); in Pharma effluent (UV), maximum removal of Sulphate & Chromium was reported (100% each), followed by Nitrate (59.45%); in Inorganic effluent (UV), maximum removal of Nitrate & Chromium was reported (100% each), followed by Sulphate (28.13%). The findings of the present study clearly reveals that metallic nanoparticle ZnO has been observed in resourceful dye discoloration of MB very efficiently compared to RM & MO, and remediation of nutrients more proficiently from polluted industrial effluents. The outcomes of this pilot study can be proved as benchmark, concrete and conclusive for dye decoloration as well as nutrients remediation of natural and anthropogenic industrial effluents using synthesized metallic nanoparticle (e.g. ZnO) at lab and industrial scales regionally, nationally and world over.
DOI: 10.6084/m9.figshare.16681849.v1
title: Wuhan data and code

description: This dataset is collected from a residential area in Wuhan (China), which covers an area of 0.53km<sup>2</sup>, including about 20 million faces. We generated the mesh data from oblique aerial images with a ground sample distance (GSD) of 5cm. We manually annotated the dataset and divided it into 7 object categories, namely <i>roof</i>, <i>façade</i>, <i>window</i>, <i>impervious surface</i>, <i>tree</i>, <i>vehicle</i> and <i>low vegetation</i>.The python code for texture-point-integrated network also included
DOI: 10.6084/m9.figshare.25236715.v1
title: Figures Alraies et al 2024

description: Immune cells experience large deformation events while patrolling their environment. These cell shape changes arise from the continuous physical constraints encountered during migration within and between tissues. It has become increasingly clear that these cells can survive and adapt to these changes in cell shape using dedicated shape sensing pathways. However, how shape sensing impacts their behavior and function remains largely unknown. Here we identify a shape sensing mechanism that couples dendritic cell motility to expression of CCR7, the chemokine receptor guiding their migration from the periphery to lymph nodes. We found that this mechanism is controlled by the lipid metabolism enzyme cPLA<sub>2</sub>, requires nuclear envelop unfolding and tension and is finely tuned by the Arp2/3 actin nucleation complex. We further show that shape sensing through the Arp2/3-cPLA<sub>2</sub> axis controls Ikkb-NFkB-dependent transcriptional reprogramming of dendritic cells, which licenses them for migration to lymph nodes to exert their homeostatic tolerogenic function. Our results show that cell shape changes experienced by immune cells can define their migratory behavior and immunoregulatory properties, revealing the contribution of the physical properties of tissues to the balance between tolerance and immunity.
DOI: 10.6084/m9.figshare.3561018.v1
title: Appendix E. List of plant species that form the studied interaction networks.

description: List of plant species that form the studied interaction networks.
DOI: 10.6084/m9.figshare.6187307.v1
title: Data from Social object play between captive bottlenose and Risso’s dolphins

description: The file set contains video and excel data of social object play between captive bottlenose and Risso's dolphins taken at the Kujukushima Aquarium, Umi Kirara, Japan.
DOI: 10.6084/m9.figshare.22492606.v1
title: Prediction of Protein Aggregation Propensity via Data-driven Approaches_Database

description: Protein aggregation is the phenomenon which occurs when misfolded or unfolded protein physically binds together and can cause the development of various amyloidosis diseases. The goal of this study was to construct surrogate models for predicting protein aggregation using data-driven methods with two types of databases. This study suggests which approaches is more effective to predict protein aggregation depending on types of descriptors and database. <br> <br>
DOI: 10.17632/fhmbdc496y
title: Assembly data for newly sequenced genomes used in "Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data"

description: These are 256 assembly files for the genomes sequenced for the manuscript. The file "accession.txt" contains tags and accession numbers
DOI: 10.17632/hg7g2c9927
title: UGCs on Tourist Perceptions of Culture Shock in China UAE and India and Post Visit Behavioral Intentions 

description: Data has comments by tourists post their visit (around 450)-2017-2020- regarding culture shock experiences from which ABSA and EA was conducted to predict behavioral intentions of tourists