cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vcm97v
title: Occurrence Download

description: A dataset containing 2706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Apium fernandezianum, Apium panul, Apium prostratum)",
 "BasisOfRecord is Specimen",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2706 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007721-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y453fx
title: Occurrence Download

description: A dataset containing 48588 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence)",
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycopodiopsida"
 ]
}

 The dataset includes 48588 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007716-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15488014
title: Dataset for the manuscript "Weaving values, knowledge, and context to care for human-nature relationships in protected areas". Published in People and Nature, 2025.
DOI: 10.5281/zenodo.15488015
title: Dataset for the manuscript "Weaving values, knowledge, and context to care for human-nature relationships in protected areas". Published in People and Nature, 2025.
DOI: 10.15468/dl.5gsv2u
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mayaheros urophthalmus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032711-251025141854904/datasets/export for details.
DOI: 10.6084/m9.figshare.30451208
title: <b>Data Sheet: </b><b>Turbulent Pipe-Fitting Losses in Thickened Waste Activated and Digested Sludges Pipeline Transport.</b>

description: This dataset includes all raw data and analyses in Excel files. It contains measurements from digested sludge and wastewater activated sludge, including final calculations of loss coefficients for bypass sections, plug valves, knife valves, and gradual flow expansions and contractions, across a range of concentrations.
DOI: 10.6084/m9.figshare.30451208.v1
title: <b>Data Sheet: Experimental investigation of loss coefficients for concentrated wastewater sludge in four conventional fittings.</b>

description: This dataset includes all raw data and analyses in Excel files. It contains measurements from digested sludge and wastewater activated sludge, including final calculations of loss coefficients for bypass sections, plug valves, knife valves, and gradual flow expansions and contractions, across a range of concentrations.
DOI: 10.6084/m9.figshare.30451208.v2
title: <b>Data Sheet: </b><b>Turbulent Pipe-Fitting Losses in Thickened Waste Activated and Digested Sludges Pipeline Transport.</b>

description: This dataset includes all raw data and analyses in Excel files. It contains measurements from digested sludge and wastewater activated sludge, including final calculations of loss coefficients for bypass sections, plug valves, knife valves, and gradual flow expansions and contractions, across a range of concentrations.
DOI: 10.15468/dl.b7nbss
title: Occurrence Download

description: A dataset containing 1388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rhinoceros unicornis"
 ]
}

 The dataset includes 1388 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032712-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30617255
title: Biogeography of Virioplankton Abundance and Subcluster Patterns in the Northwest Pacific: A Large-Scale Perspective

description: This dataset contains flow cytometry based measurements of virioplankton abundances and subcluster compositions collected during an oceanographic survey in the Northwest Pacific. Seawater samples were obtained using a rosette equipped with Niskin bottles at predefined depths. All samples were fixed immediately with glutaraldehyde, flash frozen in liquid nitrogen and stored at −80 °C until analysis. Viral particles were quantified using a benchtop flow cytometer following established protocols for SYBR Green I staining. Distinct viral subclusters were identified based on fluorescence and side scatter signatures. Corresponding environmental parameters, including temperature, salinity and chlorophyll a, were measured using a CTD and standard fluorometric procedures.Raw cytometry files were processed with consistent gating strategies to ensure cross station comparability. Quality control procedures included removal of anomalous events, verification of instrument stability and manual inspection of gates. Derived variables include total virus like particles and individual viral phenotypic subclusters. Metadata files provide station information, geographic coordinates, depth and environmental measurements for each sample.All sampling activities were conducted in accordance with national and institutional regulations. Research cruise permissions and marine scientific research approvals were obtained from relevant authorities. No human or animal subjects were involved. This dataset supports reproducibility by providing both processed results and complete metadata required for independent reanalysis.
DOI: 10.6084/m9.figshare.30617255.v1
title: Biogeography of Virioplankton Abundance and Subcluster Patterns in the Northwest Pacific: A Large-Scale Perspective

description: This dataset contains flow cytometry based measurements of virioplankton abundances and subcluster compositions collected during an oceanographic survey in the Northwest Pacific. Seawater samples were obtained using a rosette equipped with Niskin bottles at predefined depths. All samples were fixed immediately with glutaraldehyde, flash frozen in liquid nitrogen and stored at −80 °C until analysis. Viral particles were quantified using a benchtop flow cytometer following established protocols for SYBR Green I staining. Distinct viral subclusters were identified based on fluorescence and side scatter signatures. Corresponding environmental parameters, including temperature, salinity and chlorophyll a, were measured using a CTD and standard fluorometric procedures.Raw cytometry files were processed with consistent gating strategies to ensure cross station comparability. Quality control procedures included removal of anomalous events, verification of instrument stability and manual inspection of gates. Derived variables include total virus like particles and individual viral phenotypic subclusters. Metadata files provide station information, geographic coordinates, depth and environmental measurements for each sample.All sampling activities were conducted in accordance with national and institutional regulations. Research cruise permissions and marine scientific research approvals were obtained from relevant authorities. No human or animal subjects were involved. This dataset supports reproducibility by providing both processed results and complete metadata required for independent reanalysis.
DOI: 10.15468/dl.adqv4w
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cirrhinus cirrhosus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032714-251025141854904/datasets/export for details.
DOI: 10.15468/dl.zxaj2m
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Penelopides mindorensis"
 ]
}

 The dataset includes 232 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032715-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uz5wba
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cirrhinus molitorella",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032716-251025141854904/datasets/export for details.
DOI: 10.15468/dl.k35xbn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Nymphaea harleyi"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032718-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvhgwe
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Equus kiang"
 ]
}

 The dataset includes 146 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032719-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30616541.v1
title: Supplementary Materials

description: Supplementary Materials S1: The translation-related candidate genes.Supplementary Materials S2: The Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses of translation regulatory factors in RIRI-PA1 cells infected with AcMNPV-GFP at 24 hpi.Supplementary Materials S3: The predicted protein conformations of eIF4G and eIF6 from <i>S. frugiperda</i> and <i>P. americana</i>.Supplementary Materials S4: The expression of AcMNPV genes and proteins in RIRI-PA1 cells infected with AcMNPV-GFP at 24 hpi. (A) FPKM levels of t AcMNPV genes determined by polysome-seq. (B) LFQ intensity levels of AcMNPV protein determined by LC-MS/MS protein identification. Blue highlights indicate shared genes or proteins identified by both polysome-seq and LC-MS/MS protein identification.Supplementary Materials S5: The protein–protein interaction models of <i>P. americana</i> and <i>S. frugiperda</i> eIF4G and eIF6 with AcMNPV proteins.Additional list: the primer sequences used in this study.
DOI: 10.6084/m9.figshare.30615932
title: Simulated Data for Benchmark

description: To facilitate reuse and reproducibility, we provide all <b>499</b> simulated datasets generated in this study together with their ground-truth annotations. For each simulation, we release (i) the cell–clone assignment table, (ii) the corresponding clonal tree, (iii) the simulated scRNA-seq count matrix used as input to RNA-based benchmarks, and (iv) the CNV-by-cell matrices inferred by inferCNV from these counts.
DOI: 10.6084/m9.figshare.30615932.v3
title: Simulated Data for Benchmark

description: To facilitate reuse and reproducibility, we provide all <b>499</b> simulated datasets generated in this study together with their ground-truth annotations. For each simulation, we release (i) the cell–clone assignment table, (ii) the corresponding clonal tree, (iii) the simulated scRNA-seq count matrix used as input to RNA-based benchmarks, and (iv) the CNV-by-cell matrices inferred by inferCNV from these counts.
DOI: 10.6084/m9.figshare.30615932.v2
title: Simulated Data for Benchmark

description: To facilitate reuse and reproducibility, we provide all <b>499</b> simulated datasets generated in this study together with their ground-truth annotations. For each simulation, we release (i) the cell–clone assignment table, (ii) the corresponding clonal tree, (iii) the simulated scRNA-seq count matrix used as input to RNA-based benchmarks, and (iv) the CNV-by-cell matrices inferred by inferCNV from these counts.
DOI: 10.15468/dl.w8uk48
title: Occurrence Download

description: A dataset containing 532929744 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ClassKey is Aves",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is EOD – eBird Observation Dataset"
 ]
 }
 }
 ]
}

 The dataset includes 532929744 records from 15927 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032623-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.423q544
title: Data from: Inferring processes of coevolutionary diversification in a community of Panamanian strangler figs and associated pollinating wasps

description: The fig and pollinator wasp obligate mutualism is diverse (~750 described
 species), ecologically important, and ancient (~80 Ma). Once thought to be
 an example of strict one-to-one cospeciation, current thinking suggests
 genera of pollinator wasps codiversify with corresponding sections of
 figs, but the degree to which cospeciation or other processes contribute
 to the association at finer scales is unclear. Here we use genome-wide
 sequence data from a community of Panamanian strangler figs and associated
 wasp pollinators to estimate the relative contributions of four
 evolutionary processes generating cophylogenetic patterns in this
 mutualism: cospeciation, host switching, pollinator speciation, and
 pollinator extinction. Using a model-based approach adapted from the study
 of gene family evolution, our results demonstrate the importance of host
 switching of pollinator wasps at this fine phylogenetic and regional
 scale. Although we estimate a modest amount of cospeciation, simulations
 reveal the number of putative cospeciation events to be consistent with
 what would be expected by chance. Additionally, model selection tests
 identify host switching as a critical parameter for explaining
 cophylogenetic patterns in this system. Our study demonstrates a promising
 approach through which the history of evolutionary association between
 interacting lineages can be rigorously modeled and tested in a
 probabilistic phylogenetic framework.
description: aleData and scripts for ALE
 analyses.dataScripts to process RAD
 and UCE data. Final UCE loci are also included.janeData and information for
 running Jane analysis.pacoData and script for Paco
 analysis.snappData and script for
 SNAPP analysis.starbeastData and script for StarBEAST analysis.svdquartetsData for SVDquartets analysis.
DOI: 10.5061/dryad.90qg722
title: Data from: Humoral immune responses against gut bacteria In dogs with inflammatory bowel disease

description: Inflammatory bowel disease (IBD) in dogs is associated with clinical signs
 of intestinal dysfunction, as well as abnormal lymphocytic and myeloid
 cell infiltrates in the small and/or large intestine. Thus, in many
 respects IBD in dogs resembles IBD in humans. However, the factors that
 trigger intestinal inflammation in dogs with IBD are not well understood
 and have been variously attributed to immune responses against dietary
 antigens or intestinal antigens. Previous studies in humans with IBD have
 documented increased production of IgG and IgA antibodies specific to
 intestinal bacteria, and this abnormal immune response has been linked to
 disease pathogenesis. Therefore, we investigated the humoral immune
 response against gut bacteria in dogs with IBD, using flow cytometry to
 quantitate IgG and IgA binding. Studies were also done to investigate the
 source of these antibodies (locally produced versus systemic production)
 and whether greater antibody binding to bacteria is associated with
 increased inflammatory responses. We found that dogs with IBD had
 significantly higher percentages and overall amounts of IgG bound to their
 intestinal bacteria compared to healthy dogs. Similarly, significantly
 higher percentages of bacteria were IgA+ bacteria were also found in dogs
 with IBD. Serum antibody recognition of gut bacteria was not different
 between healthy dogs and dogs with IBD, suggesting that anti-bacterial
 antibodies were primarily produced locally in the gut rather than
 systemically. Importantly, bacteria in the Actinobacteria phylum and in
 particular the genus Collinsella had significantly greater levels of
 antibody binding in dogs with IBD. Based on these findings, we concluded
 that antibody binding to commensal gut bacteria was significantly
 increased in dogs with IBD, that particular phyla were preferential
 targets for gut antibodies, and that anti-bacterial antibody responses may
 play an important role in regulating gut inflammation.
description: Summary data
 pointFig1Fig2Ch.rawDm.raw16s
 rRNAHk.raw16s
 rRNAHkSorted16s rRNAHL.raw16s rRNAHLSorted16s rRNAJ.raw16s rRNAKa.raw16s rRNAKaSorted16s rRNAKo.raw16s rRNAKoSorted16s rRNALL.rawLS.raw16s rRNALSSortedMH.raw16s rRNAMi.raw16s rRNAMiSorted16s rRNAMm.raw16s rRNAMu.raw16s rRNAMuSorted16s rRNAOk.raw16s rRNAOkSorted16s rRNAR.raw16s rRNARSorted16s rRNARx.raw16s rRNAS2.raw16s rRNASF.raw16s rRNASFSorted16s rRNAT.raw16s rRNATd.raw16s rRNAotu_table.genus.relativeOTU_genusotu_table.phyla.relativeOTU_Phylaotu_table.relativeotu_table_group.genus.relativeOTU_group_genusotu_table_group.phyla.relativeOTU_group_phylaotu_table_group.relativeotu_table.g10.relative.tranotu_table.p10.relative.tranotu_table.g10.group.relative.tranotu_table.p10.group.relative.tranFig3Fig4Fig5Fig6Fig7S1_figS1_tableS2_figS2_tableS3_figS3_tableS4_figS5_figS6_figS7_fig
DOI: 10.5061/dryad.qq086mk
title: Data from: UAV wildlife radio telemetry: system and methods of localization

description: 1. The majority of bird and bat species are incapable of carrying tags
 that transmit their position to satellites. Given fundamental power
 requirements for such communication, burdened mass guidelines, and battery
 technology, this constraint necessitates the continued use of very high
 frequency (VHF) radio beacons. As such, efforts should be made to mitigate
 their primary deficiencies: detection range, localization time, and
 localization accuracy. 2. The integration of a radio telemetry system with
 an unmanned aerial vehicle (UAV) could significantly improve the capacity
 for data collection from VHF tags. We present a UAV-integrated radio
 telemetry system that relies on open source hardware and software.
 Localization methods including signal processing, bearing estimation based
 on principal component analysis, localization techniques, and test results
 are discussed. 3. Using a low power beacon applicable for bats and small
 birds, testing showed that the improved vantage of the UAV-radio telemetry
 system (UAV-RT) provided significantly higher received signal power
 compared to low level flights (maximum range beyond 1.4 km). Flight
 testing of localization methods showed median bearing errors between
 2.3-6.8 degrees, with localization errors of between 5-14% of the distance
 to the tag. In a direct comparison to an experienced radio telemetry user,
 the UAV-RT system provided bearing and localization estimates with 53%
 less error. 4. This paper introduces the core functionality and use
 methods of the UAV-RT system, while presenting baseline localization
 performance metrics. An associated website hosts plans for assembly and
 software installation. The methods of UAV-RT use for tag detection will be
 further developed in future works. For both the detection and localization
 problems, the mobility of a flying asset drastically reduces tracker time
 requirements. A seven-minute flight would be sufficient to collect five
 equally spaced bearing estimates over a 1 km transect. The use of a
 software defined radio on the UAV-RT system will allow for the
 simultaneous detection and localization of multiple tags.
description: UAV-RT Testing Results
 DataSee attached README
 file. The files have been compressed to a .zip file using Mac OS X
 Yosemite Version 10.10.5.UAV-RT-Data.zip
DOI: 10.5061/dryad.9nb07pr
title: Data from: High frequency of multiple paternity in Eastern red bats, Lasiurus borealis, based on microsatellite analysis

description: Most species of bats give birth to only one pup each year, although
 Eastern red bats (Lasiurus borealis) can produce up to five pups per
 litter. Offspring in a single litter have been documented to be at
 different stages of development, suggesting that multiple paternity
 occurs. We tested the null hypothesis of genetic monogamy in red bats
 using six autosomal microsatellites and one X-linked microsatellite from
 31 parent/offspring groups for a total of 128 bats. We sampled both
 pregnant females and mothers with pups that were obtained from bats
 submitted to departments of health in Oklahoma and Texas for rabies
 testing. Multiple paternity was assessed using a maximum-likelihood
 approach, hypothesis testing, and X-linked locus exclusion. The mean
 polymorphic information content of our markers was high (0.8819) and
 combined non-exclusion probability was low (0.00027). Results from the
 maximum-likelihood approach showed that 22 out of 31 (71%)
 parent/offspring groups consisted of half siblings, hypothesis testing
 rejected full sibship in 61% of parent/offspring groups, and X-linked
 locus exclusion suggested multiple paternity in at least 12
 parent/offspring groups, rejecting our hypothesis of genetic monogamy.
 This frequency of multiple paternity is the highest reported thus far for
 any bat species. High levels of multiple paternity have the potential to
 impact interpretations of genetic estimates of effective population size
 in this species. Further, multiple paternity might be an adaptive strategy
 to allow for increased genetic variation and large litter size, which
 would be beneficial to a species threatened by population declines from
 wind turbines.
description: multiple_paternity_in_red_bats_genotype_dataReference: High frequency of multiple paternity in Eastern red bats, Lasiurus borealis, based on microsatellite analysis Date: July 2019 Data: Microsatellite genotypes of each individual included in the study. Each row represents information on each individual bat included in the study. Family groups are organized by mother and her offspring. Information in columns A-B are individual bat identifiers with either museum collection numbers or Department of Health numbers. Information in columns C-P are DNA fragment lengths for each of the 6 microsatellite loci. 0 is used for missing data.