cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.24256099
title: Manual organelle segmentations (crop230) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus, mitochondria in jrc_mus-kidney using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop230<b>Primary Annotator</b>: Alyson Petruncio<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 16868 x 29124 x 82724 (x, y, z)<b>Classes annotated</b>: nucleus, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/labels/groundtruth/crop230<b>Source (EM) dataset ID</b>: jrc_mus-kidney<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 98.3 x 63.81 x 177.59 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913035<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/ckr-ljf-rpw
title: Romankenkius kenki Ball, 1974

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dte-4xj-rj0
title: Seidlia schmidti Zabusov, 1916

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24256099.v1
title: Manual organelle segmentations (crop230) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus, mitochondria in jrc_mus-kidney using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop230<b>Primary Annotator</b>: Alyson Petruncio<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 16868 x 29124 x 82724 (x, y, z)<b>Classes annotated</b>: nucleus, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/labels/groundtruth/crop230<b>Source (EM) dataset ID</b>: jrc_mus-kidney<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 98.3 x 63.81 x 177.59 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913035<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/m3e-abk-hls
title: Polycelis felina (Dalyell, 1814)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sq8-gqt-jdh
title: Semivermilia elliptica Imajima, 1978

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/090-1rc-dds
title: Bdelloura candida (Girard, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rz9-0lz-bam
title: Cura pinguis (Weiss, 1909)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.m84msb
title: Occurrence Download

description: A dataset containing 867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Desmognathus organi Crespi, Browne & Rissler, 2010)"
 ]
}

 The dataset includes 867 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039805-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jmx-n1c-a1g
title: Ascaris Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vt2-kl4-2cq
title: Anonchotaenia Cohn, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e83-xvn-k35
title: Paramphistomum Fischoeder, 1901

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l4r-622-fk8
title: Paramphistomum Fischoeder, 1901

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s56-mz9-yfg
title: Euclymene Verrill, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h2k-amc-jje
title: Lineus longissimus (Gunnerus, 1770)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lya-mek-6ad
title: Novomitchellia Özdikmen, 2010

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.9e859f
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calamus lambirensis J.Dransf."
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039806-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/1gw-qeq-wkj
title: Helobdella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pme-qtb-bfr
title: Erpobdella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bb1-pgr-bmb
title: Dugesia indonesiana Kawakatsu, 1973

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jcr-1h0-b6z
title: Diporodemus Hyman, 1938

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rgl-cwn-b5z
title: Limnodrilus Claparède, 1862

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s28-cm3-f9d
title: Cyathostomum catinatum Looss, 1900

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9kw-z69-8v0
title: Romankenkius patagonicus (Borelli, 1901)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lg5-vwh-hc5
title: Baseodiscus unistriatus (Isler, 1900)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7jt-22t-t9g
title: Romankenkius patagonicus (Borelli, 1901)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/csr-vhe-vq3
title: Alitta succinea (Leuckart, 1847)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dlp-mvc-65t
title: Drepanophorella rosea (Punnett, 1903)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9kz-rpq-001
title: Proteocephalus tetrastomus (Rudolphi, 1810) Willemse, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nm8-8a7-9xv
title: Proteocephalus macrocephalus (Creplin, 1825) Nufer, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.24256105
title: Manual organelle segmentations (crop231) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus, mitochondria in jrc_mus-kidney using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop231<b>Primary Annotator</b>: Alyson Petruncio<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 23268 x 29124 x 82724 (x, y, z)<b>Classes annotated</b>: nucleus, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/labels/groundtruth/crop231<b>Source (EM) dataset ID</b>: jrc_mus-kidney<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 98.3 x 63.81 x 177.59 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913035<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24256105.v1
title: Manual organelle segmentations (crop231) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus, mitochondria in jrc_mus-kidney using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop231<b>Primary Annotator</b>: Alyson Petruncio<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 6.4 x 6.4 x 6.4 (x, y, z)<b>Annotated data offset (nm)</b>: 23268 x 29124 x 82724 (x, y, z)<b>Classes annotated</b>: nucleus, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney/jrc_mus-kidney.zarr/recon-1/labels/groundtruth/crop231<b>Source (EM) dataset ID</b>: jrc_mus-kidney<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 98.3 x 63.81 x 177.59 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913035<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/8t8-d9h-3ar
title: Platyhelminthes Minot, 1876

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/daf-475-5dm
title: Nitzschia elongata (Nitzsch, 1826) Johnston, 1865

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ryd-6s1-hb3
title: Trichinella spiralis (Owen, 1835) Railliet, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w44-96e-fnv
title: Glossiphonia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/47h-q5z-2w3
title: Trichinella spiralis (Owen, 1835) Railliet, 1895

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ke7-gtz-da1
title: Dugesia japonica Ichikawa & Kawakatsu, 1964

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9l0-byc-8wb
title: Spiculopteragia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kqg-cnk-ps3
title: Amidostomum Railliet & Henry, 1909

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3n3-knx-cbr
title: Planariidae Stimpson, 1857

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g28-jh3-7jn
title: Dugesia capensis Sluys, 2007

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/03k-2zr-n7v
title: Phagocata kawakatsui Okugawa, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jg4-j3b-k42
title: Phagocata kawakatsui Okugawa, 1956

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6mk-3z3-nw4
title: Dugesia japonica Ichikawa & Kawakatsu, 1964

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r4h-hra-aa4
title: Tubulanus annulatus (Montagu, 1804)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m5j-cbz-zkj
title: Dugesia ryukyuensis Kawakatsu, 1976

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/96f-nfa-tt0
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rxz-xyq-zes
title: Hydroides parva (Treadwell, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/52f-12q-5gs
title: Eunereis longissima (Johnston, 1840)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6wq-jgd-e68
title: Placobdella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b83-5p0-7vt
title: Pentacoelum hispaniense Sluys, 1989

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dqv-zfe-n4f
title: Pentacoelum hispaniense Sluys, 1989

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5sm-vdk-z2s
title: Wardium cirrosa (Krabbe, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60x-dy5-b2x
title: Girardia dorotocephala (Woodworth, 1897)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25378/janelia.25800004
title: Manual organelle segmentations (crop421) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney glomerulus (jrc_mus-kidney-glomerulus-2)

description: <br><b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus in jrc_mus-kidney-glomerulus-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop421<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 8.8 x 8.8 x 9.34 (x, y, z)<b>Annotated data offset (nm)</b>: 3222 x 4022 x 17190 (x, y, z)<b>Classes annotated</b>: nucleus<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney-glomerulus-2/jrc_mus-kidney-glomerulus-2.zarr/recon-1/labels/groundtruth/crop421<b>Source (EM) dataset ID</b>: jrc_mus-kidney-glomerulus-2<b>Source (EM) voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 18.98 x 24.61 x 26.54 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24164004<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney-glomerulus-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.25800004.v1
title: Manual organelle segmentations (crop421) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney glomerulus (jrc_mus-kidney-glomerulus-2)

description: <br><b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus in jrc_mus-kidney-glomerulus-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop421<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 16 x 16 x 16 (x, y, z)<b>Annotated data dimensions (µm)</b>: 8.8 x 8.8 x 9.34 (x, y, z)<b>Annotated data offset (nm)</b>: 3222 x 4022 x 17190 (x, y, z)<b>Classes annotated</b>: nucleus<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-kidney-glomerulus-2/jrc_mus-kidney-glomerulus-2.zarr/recon-1/labels/groundtruth/crop421<b>Source (EM) dataset ID</b>: jrc_mus-kidney-glomerulus-2<b>Source (EM) voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 18.98 x 24.61 x 26.54 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24164004<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-kidney-glomerulus-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.3535/bgs-n1h-eze
title: Dugesia ryukyuensis Kawakatsu, 1976

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hav-typ-x9j
title: Seidlia auriculata (Ijima & Kaburaki, 1916)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.m6sdpv
title: Occurrence Download

description: A dataset containing 104266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.75563 30.97829,-49.87319 50.28632,-132.25413 51.05864,-96.21247 -40.33271,-66.09194 -61.44283,-25.93123 -7.1229,-71.75563 30.97829))",
 "TaxonKey is Reduviidae",
 "Year 2014-2024"
 ]
}

 The dataset includes 104266 records from 153 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039793-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/fjz-ecs-k2q
title: Erpobdella

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rs1-86h-3hf
title: Dugesia ryukyuensis Kawakatsu, 1976

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1nv-sn6-es7
title: Dugesia ryukyuensis Kawakatsu, 1976

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hdn-eql-v1d
title: Spirobranchus giganteus (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.