cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3635693_d14
title: Additional file 9: Table S9. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Association of each pair between a pathway and a clinic index (for Normal samples) on diabetes datasets. (XLS 56 kb)
DOI: 10.6084/m9.figshare.c.3635693_d13
title: Additional file 14: Table A4. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Pathways ranking for colorectal cancer. (XLS 97 kb)
DOI: 10.6084/m9.figshare.c.3635693_d11
title: Additional file 10: Table S10. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Association of each pair between a pathway and a clinic index (for Diabetes samples) on diabetes datasets. (XLS 60 kb)
DOI: 10.6084/m9.figshare.c.3635693_d10
title: Additional file 6: Table S6. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Overlaps between pathway genes and disease associated genes on diabetes datasets. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3635693_d8
title: Additional file 8: Table S8. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Pathway-pair as a crosstalk identified on diabetes datasets. (XLS 107 kb)
DOI: 10.6084/m9.figshare.c.3635693_d9
title: Additional file 15: Table A5. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Pathway-pair as a crosstalk (colorectal cancer). (XLS 133 kb)
DOI: 10.6084/m9.figshare.c.3635693_d7
title: Additional file 12: Table S12. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Association of each pair between a DEVG and a clinic index (for Diabetes samples) on diabetes datasets. (XLS 119 kb)
DOI: 10.6084/m9.figshare.c.3635693_d5
title: Additional file 7: Table S7. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Pathway ranking by different methods on diabetes datasets. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3635693_d6
title: Additional file 11: Table S11. of Integrative enrichment analysis: a new computational method to detect dysregulated pathways in heterogeneous samples

description: Association of each pair between a DEVG and a clinic index (for Normal samples) on diabetes datasets. (XLS 96 kb)
DOI: 10.6084/m9.figshare.c.3635678_d4
title: Additional file 5: Table S1. of Up-regulation of A20/ABIN1 contributes to inefficient M1 macrophage polarization during Hepatitis C virus infection

description: Characteristics of the study subjects. (XLS 18 kb)
DOI: 10.6084/m9.figshare.c.3635678_d3
title: Additional file 6: Table S2 of Up-regulation of A20/ABIN1 contributes to inefficient M1 macrophage polarization during Hepatitis C virus infection

description: Primers used in the experiment. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3634733_d2
title: Additional file 1: of Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

description: Spreadsheet with taxonomy of species detected and their abundances as read counts. (XLSX 143Â kb)
DOI: 10.6084/m9.figshare.c.3634733_d1
title: Additional file 2: of Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

description: OTU and taxonomy tables, metadata, and R code for analysis of differential abundance. (ZIP 32Â kb)
DOI: 10.6084/m9.figshare.c.3634685_d1
title: Additional file 1: of Individuals with knee impairments identify items in need of clarification in the Patient Reported Outcomes Measurement Information System (PROMISÂŽ) pain interference and physical function item banks â   a qualitative study

description: Results of Item Screening. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3634664_d2
title: MOESM3 of Tip60 complex binds to active Pol II promoters and a subset of enhancers and co-regulates the c-Myc network in mouse embryonic stem cells

description: Additional file 3: Table S1 . Summary of all ChIP-seq datasets used representing the number of unique reads and GEO accession numbers.
DOI: 10.6084/m9.figshare.c.3634658_d1
title: Additional file 1: of Invasive pneumococcal disease rates linked to meteorological factors and respiratory virus circulation (Catalonia, 2006–2012)

description: Distribution of IPD, respiratory viruses and meteorological factors by month and year. Catalonia, 2006–2012. (XLS 46 kb)
DOI: 10.15468/dl.whp6ga
title: Occurrence Download

description: A dataset containing 36439 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euchaetidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36439 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032839-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3633014_d12
title: Additional file 2: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FP DNA Sequences. The A. aegypti supercontig locations (start-end sites) for the entire FAIRE-seq data set are provided. (XLSX 3291Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d11
title: Additional file 3: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs immediately upstream of genes. FPs within 1Â kb upstream of the TSS of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 185Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d9
title: Additional file 4: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to 5â   UTRs. FPs mapping to the 5â   UTRs of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d6
title: Additional file 6: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: Intragenic FPs. The number of intragenic FPs located within various genes is noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 243Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d7
title: Additional file 10: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs associated with non-coding genes. FPs within 1Â kb upstream of the indicated non-coding genes are noted. The distance of the FP from the TSS of each gene is indicated. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 163Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d5
title: Additional file 5: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to 3â   UTRs. FPs mapping to the 3â   UTRs of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d4
title: Additional file 8: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to introns. Genes with intronic FPs and FP positions within introns are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d3
title: Additional file 7: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to exons. Genes with exonic FPs and the FP positions within exons are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d2
title: Additional file 11: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: Moyo-S vs. Moyo-R SNPs mapping to FPs. Moyo-S vs. Moyo-R SNPs at the indicated positions mapped to the FPs. The supercontig location of each SNP and corresponding FP ID numbers are indicated. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 181Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d1
title: Additional file 9: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to intron-exon boundaries. The intron-exon boundary locations of FPs in the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 174Â kb)
DOI: 10.6084/m9.figshare.c.3632150_d1
title: Additional file 3: of Role of plant MicroRNA in cross-species regulatory networks of humans

description: The technical details and p-values to describe the enrichment of GO terms for Arabidopsis. (XLS 109 kb)
DOI: 10.6084/m9.figshare.c.3632048_d2
title: Additional file 2: Table S1. of Systematic identification of Ctr9 regulome in ERα-positive breast cancer

description: Identification of ERα and Ctr9 targets by analyzing the ChIP-seq and microarray data sets. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3630887_d3
title: Additional file 1: Table S1. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

description: List of differentially expressed genes between BA3NI-I0 and BA3NI-I6 (average of biological triplicates). (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3630896_d2
title: Additional file 1: Table S1. of Genome-wide analyses of long noncoding RNA expression profiles correlated with radioresistance in nasopharyngeal carcinoma via next-generation deep sequencing

description: Primer sequences of the lncRNAs and mRNAs. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3630896_d1
title: Additional file 2: Table S2. of Genome-wide analyses of long noncoding RNA expression profiles correlated with radioresistance in nasopharyngeal carcinoma via next-generation deep sequencing

description: The list of lncRNAs with differential expression. (XLSX 342 kb)
DOI: 10.6084/m9.figshare.c.3630887_d2
title: Additional file 3: Table S3. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

description: List of differentially expressed genes between BA3NI-I0 and BA3NI-I9-C1 (average of biological triplicates). (XLSX 214 kb)
DOI: 10.6084/m9.figshare.c.3630836_d4
title: Additional file 1: Table S1. of A New Recessive Gene Conferring Resistance Against Rice Blast

description: Sampling and phenotyping information for the 300 isolates selected from five Chinese M. oryzae populations. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3630887_d1
title: Additional file 2: Table S2. of Derivation of chicken induced pluripotent stem cells tolerant to Newcastle disease virus-induced lysis through multiple rounds of infection

description: List of differentially expressed genes between BA3NI-I6 and BA3NI-I9-C1 (average of biological triplicates). (XLSX 189 kb)
DOI: 10.6084/m9.figshare.c.3630788_d1
title: Additional file 1: of Synergistic effects of baicalein with cefotaxime against Klebsiella pneumoniae through inhibiting CTX-M-1 gene expression

description: Table S1-1 for Fig. 2. Effects of interactive concentration baicalein on the growth of K. pneumoniae.(Log10(CFU/mL)). Table S1-2 for Fig. 3. Comparison of ESBL gene percentage among different groups. Table S1-3 for Fig. 4. Effect of baicalein on the mRNA expression of TEM. Table S1-4 for Fig. 5. Effect of baicalein on the mRNA expression of CTX-M-1. Table S1-5 for Fig. 6. Effect of baicalein on the mRNA expression of CTX-M-9. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3629909_d5
title: Additional file 2: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: KEGG pathways of the assembled unigenes in radish. (XLSX 130 kb)
DOI: 10.6084/m9.figshare.c.3629909_d4
title: Additional file 5: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: Annotation of transcript sequences related to flowering genes in radish. (XLSX 139 kb)
DOI: 10.6084/m9.figshare.c.3629909_d2
title: Additional file 4: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: Identification of flowering related genes in radish. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3629909_d3
title: Additional file 1: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: Summary of all the assembled unigenes in radish leaf transcriptome. (XLSX 14582 kb)
DOI: 10.6084/m9.figshare.c.3629909_d1
title: Additional file 6: of 
                     De novo transcriptome analysis in radish (Raphanus sativus L.) and identification of critical genes involved in bolting and flowering

description: Specific primer sequences of flowering related genes for T-A cloning and RT-qPCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3629897_d1
title: MOESM1 of Inhibition of microbial biofuel production in drought-stressed switchgrass hydrolysate

description: Additional file 1. Chemical genomics dataset.
DOI: 10.6084/m9.figshare.c.3629834_d11
title: Additional file 1: Table S1. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: The nomenclature and physical locations of 117 soybean MATE genes. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3629834_d12
title: Additional file 11: Table S8. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: Primers and amplification efficiencies for qRT-PCR and RT-PCR in this study. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3629834_d7
title: Additional file 6: Table S5. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: RNA-seq data of 117 soybean MATE genes in nine tissues as shown in fragments/kilobase/million (FPKM) from Phytozome. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3629834_d6
title: Additional file 4: Table S3. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: Duplication analysis of the 117 Soybean MATE genes. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3629834_d4
title: Additional file 3: Table S2. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: Details of the 117 MATE proteins in soybean. (XLS 42 kb)
DOI: 10.6084/m9.figshare.c.3629834_d3
title: Additional file 13: Table S9. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: The Ct values of the housekeeping gene GmEF-1Îą by qRT-PCR across all samples in this study. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3629828_d5
title: Additional file 4: of Inferring plant microRNA functional similarity using a weighted protein-protein interaction network

description: The similarity score matrix for all 91378 possible pairs of the A. Thaliana miRNA dataset. (XLSX 1456Â kb)
DOI: 10.6084/m9.figshare.c.3629834_d2
title: Additional file 5: Table S4. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: The 35 known MATE transporters in plants. (XLS 51 kb)
DOI: 10.6084/m9.figshare.c.3629834_d1
title: Additional file 7: Table S6. of Genome-wide analysis of MATE transporters and expression patterns of a subgroup of MATE genes in response to aluminum toxicity in soybean

description: RNA-seq data of 117 soybean MATE genes in 14 tissues as shown in reads/kilobase/million (RPKM) normalization of the raw data from RNA-Seq Atlas on SoyBase. (XLS 44 kb)
DOI: 10.15468/dl.w6xfvh
title: Occurrence Download

description: A dataset containing 77790 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Scolecitrichidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 77790 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032840-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628928_d5
title: Additional file 1: Table S1. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

description: Relative concentration of metabolites identified in Vibrio parahaemolyticus ATCC33846. (XLSX 123 kb).
DOI: 10.6084/m9.figshare.c.3628928_d3
title: Additional file 2: Table S2. of Metabolome response to temperature-induced virulence gene expression in two genotypes of pathogenic Vibrio parahaemolyticus

description: Relative concentration of metabolites identified in Vibrio parahaemolyticus ATCC17802. (XLSX 113 kb).
DOI: 10.6084/m9.figshare.c.3628919_d2
title: Additional file 2: Figure S1. of Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions

description: Predication of putative monoterpenol glucosyltransferase. (A) k-means cluster of the UDP-glycosyltransferase (UGTs) transcripts in â  Muscat Blanc a Petits Grainsâ  . (B) phylogeny tree of UGTs based on amino acid sequences. Protein sequences are from vitis vinifera with known glucosyltransferase activity toward terpenes and biochemically characterized proteins from Vitis spp. (Vitis vinifera [Vvi] and Vitis labrusca [Vl]). Figure S2. The genes showed high homology with known terpene GTs were marked with color. Correlation of gene expression reported by the RNA-Seq and by quantitative Real-Time PCR. Data were from nine genes across four developmental stages in two years. Both the RNA-Seq values and the qRTPCR values were normalized with log2, and linear regression analysis gave an overall coefficient of variation of each gene. (ZIP 735 kb)
DOI: 10.6084/m9.figshare.c.3628919_d1
title: Additional file 1: Table S1A. of Using the combined analysis of transcripts and metabolites to propose key genes for differential terpene accumulation across two regions

description: Statistical analysis of free terpene in ‘Muscat Blanc a Petits Grains’ berries in vitage 2010 and 2011. Table S1B. Statistical analysis of glycosidically-bound terpene in ‘Muscat Blanc a Petits Grains’ berries. Table S1C. Odour activity valuesa (OAVs) of most potent terpene volatiles in ripenning‘Muscat Blanc a Petits Grains’berries. Table S2. List of differentially expressed terpene metabolism related genes in 'Muscat Blanc a Petits Grains’ berries between CL and GT regions(GT/CL). Table S3. The Pearson's correlation coefficients between glucosyltransferase gene expression profiles and monoterpenes concentration. Table S4A. The information of UGT genes selected by phylogeny tree that showed high homology with the monoterpene glutransferease. Table S4B. The information of UGT genes selected by K means analysis. Table S5. Pearson correlation of transcriptional factors and selected genes (p
DOI: 10.6084/m9.figshare.c.3628904_d4
title: Additional file 4: Table S3. of A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]

description: Newly SSR markers developed from the released â  Yugu1â   genomic sequence. (XLS 2505Â kb)
DOI: 10.6084/m9.figshare.c.3628904_d3
title: Additional file 1: Table S1. of A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]

description: Phenotypic data analysis of 11 agronomic traits and yield traits for 167Â F2 progeny. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3628904_d2
title: Additional file 3: Table S2. of A high density genetic map and QTL for agronomic and yield traits in Foxtail millet [Setaria italica (L.) P. Beauv.]

description: Correlation coefficients among agronomic and quality traits in 167Â F2 progeny in 2013 and 2014. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3628844_d8
title: Additional file 3: of MiR-106b induces cell radioresistance via the PTEN/PI3K/AKT pathways and p21 in colorectal cancer

description: miR-106bÂ overexpression Â or knockdown amounts of miR-106b were established via lentiviral transduction.
DOI: 10.6084/m9.figshare.c.3628844_d5
title: Additional file 2: of MiR-106b induces cell radioresistance via the PTEN/PI3K/AKT pathways and p21 in colorectal cancer

description: Construction of PTEN and p21 vectors and transfection.
DOI: 10.6084/m9.figshare.c.3628028_d3
title: Additional file 1: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: Morphological and physiological traits and grain yield of IR64 introgressed NILs under drought-stress condition. LDW: leaf dry weight; LA: leaf area; PLH: plant height; GY, grain yield (kgÂ ha-1); TR: transpiration rate; Cond.: stomatal conductance; TWU: total water uptake; A: assimilation rate (photosynthesis); T: transpiration; TTSW: total transpirable soil water; 0.2: severe water stress treatment (FTSW); 0.5: mild water stress treatment (FTSW); 1.0: control. Yellow cell: higher performance of +QTL NIL compared with -QTL NIL. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3627986_d10
title: Additional file 3: Table S2. of Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development

description: List of identified novel miRNAs of Brassica rapa turnip seedings exposed in dark (indicated by D), blue light (indicated by B) and UV-A (indicated by A). (XLS 93 kb)
DOI: 10.6084/m9.figshare.c.3628028_d2
title: Additional file 6: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: All GO classifications as well as the significant GO terms of up- and down-regulated differentially expressed specific genes in IR77298-14-1-2-B-10 in different water-deficit treatments. C: Cellular Components, F: Molecular Functions, P: Biological Process (XLSX 51Â kb)
DOI: 10.6084/m9.figshare.c.3628028_d1
title: Additional file 14: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: List of genes with selected motifs and enriched TF sites in the promoter region of the up-regulated DEGs in the leaf and root tissues of the two DTNs under severe WD treatment. (XLSX 305Â kb)
DOI: 10.6084/m9.figshare.c.3627986_d7
title: Additional file 5: Table S4. of Exploring miRNAs involved in blue/UV-A light response in Brassica rapa reveals special regulatory mode during seedling development

description: List of predicted target genes of conserved and novel miRNAs identified in Brassica rapa turnip seedings exposed to dark, blue light and UV-A. (XLS 1073 kb)