cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/cc439afaea42b4d5666dc1b193279833
title: MCR LTER: Coral Reef: Long-term Population and Community Dynamics: Benthic Algae and Other Community Components, ongoing since 2005

description: Coral reefs are comprised of scleractinian corals and many other benthic organims. The sampling described here quantifies the relative abundances of corals (aggregate abundance) and the other major benthic components including algal turfs, macroalgae, crustose corallines, and other sessile invertebrates. Abundance is estimated yearly at each of 6 sites (2 per shore) around the island. At each site, and in each of 4 habitats (fringing reef, backreef, forereef 10-m depth, forereef 17-m depth), 5 permanent 10-m long transects have been established and abundance estimates are made at fixed positions along each transect (n=10, 0.25 m2 quadrats per transect) allowing a repeated measures statistical analysis for the detection of temporal trends.
 This material uses data collected by the U.S. National Science Foundation's (NSF) Moorea Coral Reef Long Term Ecological Research (MCR LTER) site under Grant No. OCE 2224354 (and earlier awards). Additional financial support to the MCR LTER site was provided through a generous gift from the Gordon and Betty Moore Foundation. Research was completed under permits issued by the French Polynesian Government (Délégation à la Recherche) and the Haut-commissariat de la République en Polynésie Francaise (DTRT) (Protocole d'Accueil 2005-2023).
DOI: 10.6084/m9.figshare.21626312
title: Supplemental material UEFA/CONMEBOL

description: " HHI-DCB Seasons UEFA&CONMEBOL" shows the HHI and DCB values calculated for the different leagues of the UEFA and CONMEBOL Federations, for the 2009/10 to 2018/19 seasons. "DCB means and variances" shows the average annual values for each country. "Test and estimated models" shows the maximum likelihood estimates with panel data of the Cobb-Douglas function with country factor and pooled model. The results of the tests used are also shown.
DOI: 10.6084/m9.figshare.24239314
title: Dataset of "Ants evade harmful food by active abandonment"

description: Row Data accompanying the manuscript "Ants evade harmful food by active abandonment", published in Communication Biology.
DOI: 10.6084/m9.figshare.24306535.v3
title: DATA from: Lire le passé forestier dans un bourbier : histoire écologique et dynamique contemporaine d’une population marginale nordique d’érable rouge (<i>Acer rubrum</i>)

description: DATA from: Lire le passé forestier dans un bourbier : histoire écologique et dynamique contemporaine d’une population marginale nordique d’érable rouge (<i>Acer rubrum</i>). A MSExcel spreadsheet including wood macrofossil charcoal data extracted from a forest hollow in site T83, located at the leading edge of red maple in the mixedwood ecotone.<br>Description of the Data and file structureSheet 1 - Number of wood charcoal particles extracted at each 1cm-depth from three peat cores (B1, SR2, and SR3) sampled in the forest hollow at site T83. Cores B1, SR2, and SR3 were washed in sieves (4mm and 2mm mesh-size) and the number of charcoal particles recovered from each sieve are reported at each depth (in cm from the surface). Sheet 2 - Details of taxonomic identifications and radiocarbon datations. Core: The core from which each charcoal particle was extracted (B1, SR2, or SR3); Depth: the depth at which the charcoal particles was found (in cm from the surface), core B1 was subsampled every 5 cm for taxonomic identifications; Sieve: the sieve from which the charcoal particles was retrieved (4mm or 2mm mesh-size); Sample ID: an arbitrary number (given for each individual particle recovered from a peat sample at a given mesh-size); Charcoal ID: a unique identifier for each charcoal in the dataset; Mass: the mass of each individual charcoal particle before taxonomic identification (in g); Notes (in french): some explnatory notes regarding features used for taxonomic identifications and/or taphonomic issues; Taxonomic ID: the taxonomic identifications; Mass2: the mass of charcoal material that was send for radiocrabon datation after taxonomic identification (in g); Lab Number (UCIAMS; ULA): Laboratory number given by the Keck Carbon Cycle AMS Facility (UCIAMS) and Laboratoire de radiochronologie 14C du Centre d’études nordiques (ULA); 14C age: radiocarbon age and standard deviation (in years Before Present); 2σ-interval (and probability): the two-sigma interval of the calibrated date having the highest probability (in calibrated years Before Present) and associated probability; Median calibrated age: the median calibrated age (in calibrated years Before Present).
DOI: 10.6084/m9.figshare.25521439.v1
title: Martinez et al. ocelot reintroduction model outputs. 2024 revision

description: This file provides updates model outputs based on a 2024 revision of the ocelot reintroduction model. <br>In our study, we used population viability analyses to compare different ocelot reintroduction strategies for an identified reintroduction area. A to-be established ocelot breeding program providing individual ocelots for reintroduction will likely be small. As such, we modeled ocelot reintroduction with the limitations of no more than six ocelots released as founders in an initial year and no more than four ocelots released per year for no more than 15 subsequent years. Within these limitations, we assessed projected ocelot population abundances and extinction risks after 30 years for twenty different ocelot reintroduction strategies. This workbook provides data on updated model projections from the population viability analyses.
DOI: 10.6084/m9.figshare.25699518.v2
title: <b>The geochronologic geochemical and isotopic data of the Emeishan Large Igneous Province</b>

description: The link between mantle plumes and the formation of Large Igneous Provinces (LIPs) is well established, although the anatomy of these plumes remains equivocal. Experimental studies and geophysical data suggest that the plume head is more likely to be irregular and asymmetric, rather than an axisymmetric flattened disk-like. The Emeishan large igneous province (ELIP) provides a unique opportunity to test this hypothesis. Pivoting on detailed petrographic, geochronologic, and geochemical evidence from the late Permian basalts in the Sichuan Basin (SCB), and in conjunction with a comprehensive compilation of geologic maps (scale at 1:200,000) and published data from the ELIP, we identified several giant radiating “fingering” structures. Based on the shallower mantle source from the center to margin in the ELIP and relief of the lithosphere-asthenosphere boundary, we propose a new model to explain the evolution of the Emeishan plume periphery, envisaging a “fingering, torn apart and plumelets”. As the plume-lithosphere interacted, the edges of the flattened plume head developed fingering structures. Dragged fingers might have been torn apart into some plumelets, which dispersed and were trapped beneath the thinnest lithosphere relief, and eventually erupted to form small-scale flood basalt in the Outer Zone (OTZ) of the LIP.
DOI: 10.6084/m9.figshare.26391244.v4
title: Underlying Data for article "Altered coagulation profile of patients with high-grade glioma: clinical study with control group"

description: This data set contains sociodemographic and clinical characteristics, ECOG at admission, prothrombin time, activated partial thromboplastin time, international normalized ratio, platelet count, and blood panel results of 21 high-grade glioma patients (cases) and 42 meningioma patients (controls) from northern Peru.
DOI: 10.6084/m9.figshare.26537350
title: Supplementary Material for: Lower Plasma Levels of Selective VGF (non-acronymic) Peptides in Bipolar Disorder: Comparative Analysis Reveals Distinct Patterns Across Mood Disorders and Healthy Controls

description: Introduction Discriminating bipolar disorder (BD) from major depressive disorder (MDD) remains a challenging clinical task. Identifying specific peripheral biosignatures that can differentiate between BD and MDD would significantly increase diagnostic accuracy. Dysregulated neuroplasticity is implicated in BD and MDD, and psychotropic medications restore specific disrupted processes by increasing neurotrophic signalling. The nerve growth factor inducible vgf gene (nonacronymic) encodes a precursor protein named proVGF, which undergoes proteolytic processing to produce several VGF peptides, some of which were suggested to be implicated in mood disorders and have antidepressant effects. Since the presence of VGF peptides in humans has been exclusively investigated in brain and cerebrospinal fluid, we aimed to identify which VGF peptides are present in the plasma and to investigate whether their levels could differentiate BD from MDD as well as responders from non-responders to pharmacological interventions. Methods VGF peptides were measured in plasma from patients diagnosed with MDD (n=37) or BD (n=40 under lithium plus n=29 never exposed to lithium), as well as healthy controls (HC; n=36). Results Three VGF peptides (TLQP-11, AQEE-14 and NAPP-19) were identified using spectrometry analysis of plasma from HC. These peptides were then measured in the entire sample using ELISA immunoassay, which showed significantly lower levels of AQEE and NAPP in BD than in HC and MDD (p=5.0x10-5, p=0.001, respectively). Conclusion Our findings suggest that lower plasma levels of NAPP and AQEE are specifically associated with BD, thus possibly representing a diagnostic biomarker in mood disorders.
DOI: 10.6084/m9.figshare.27115516
title: Data and code associtated with, "Experimental coral reef communities transform yet persist under mitigated future ocean warming and acidification"

description: This study examined the development of mesocosm coral reef communities over the course of about 2 years under warming (+2 C), acidification (-0.2 pH units) and the combination of both factors.
DOI: 10.6084/m9.figshare.27200613
title: Supplementary Material for: Alanyl-glutamine inhibits the epithelial-mesenchymal transition of airway epithelial cells in asthmatic mice via DPP4-Sirt1 pathway

description: Introduction: Alanyl-glutamine (Ala-Gln) is a compound known for its protective effects in various tissue injuries. However, its role in asthma-related lung injuries remains underexplored. This study investigates the mechanisms by which Ala-Gln modulates sDPP4-induced airway epithelial-mesenchymal transition and Ovalbumin (OVA)-induced asthma in a mouse model. 
Methods: An asthma model was established in female C57BL/6J mice by using OVA. CD4+ T cells and bronchial epithelial cells (BECs) were isolated from the spleen and bronchi of the mice, respectively. Interventions included recombinant sCD26/sDPP4 protein, Ala-Gln, and EX527 (a SIRT1 inhibitor). Flow cytometry was used to assess Th17 and Treg cell populations. Mice were treated with Ala-Gln, EX527, and budesonide (BUD). Histopathological changes in lung tissues were evaluated using hematoxylin-eosin and Masson staining. White blood cell counts were measured with a hematology analyzer. The expression levels of DPP4, IL-17, SIRT1, SMAD2/3, N-cadherin, E-cadherin, MMP9, and α-SMA proteins were analyzed.
Results: Treatment with recombinant sCD26/sDPP4 resulted in decreased E-cadherin expression in BECs and increased levels of α-SMA, MMP9, and N-cadherin, effects that were mitigated by Ala-Gln. Ala-Gln also prevented the reduction in SIRT1 expression in BECs and the increase in Th17 cell differentiation induced by recombinant sCD26/sDPP4. EX527 administration alongside Ala-Gln reversed these changes and enhanced the phosphorylation of SMAD2/3 through SIRT1 signaling. BUD alone reduced inflammation and fibrosis in bronchial tissue and lowered the Th17/Treg ratio in peribronchial lymph nodes. The therapeutic effect of BUD was further improved with concurrent Ala-Gln treatment. 
Conclusion: Ala-Gln can inhibit BEC fibrosis and Th17 cell differentiation mediated by recombinant sCD26/sDPP4 through the SIRT1 pathway. Combined with BUD, Ala-Gln enhanced therapeutic efficacy in OVA-induced asthma in mice, which could offer improved outcomes for asthmatic patients with elevated DPP4 levels.
DOI: 10.6084/m9.figshare.27328578
title: Supplementary material to MFWR submission - invertebrate eDNA in freshwater rock-holes

description: Supplementary data tables for the submitted manuscript titled: "Environmental DNA reveals temporal and spatial variability of invertebrate communities in arid-lands ephemeral water bodies"Table S1. BLASTN results for showing assignment of ZOTUs for the <i>COI </i>dataset. Species marked in green are considered likely to be freshwater taxa and were included in downstream analysis, species marked in red are considered unlikely to be freshwater taxa and were excluded from downstream analysis. EC1 refers to experimental control, ‘P1’ and ‘P2’ refer to positive controls 1 and 2 respectively and ‘Blank’ refers to field blanks.Table S2. Blast results for showing assignment of ZOTUs for the 16S rRNA dataset. Species marked in green are considered likely to be freshwater taxa and were included in downstream analysis, species marked in red are considered unlikely to be freshwater taxa and were excluded from downstream analysis. EC1 refers to experimental control, ‘P2’ and ‘P3’ refer to positive controls 2 and 3 respectively and ‘Blank’ refers to field blanks.Table S3. Comparison of orders and families between those recovered from Eyre Peninsula granite rock-holes by Timms (2014) and by our eDNA metabarcoding.
DOI: 10.6084/m9.figshare.27610593
title: Supplementary Material for: Prognostic and Immunotherapeutic Role of TACC3 in Pancancer, and its Impact on Proliferation and Docetaxel Resistance in Lung Adenocarcinoma

description: Introduction:Transforming acidic coiled-coil containing protein 3 (TACC3) exerts a vital role in cancer progression by modulating cell division and facilitating tumor growth. Given the lack of comprehensive research on the pan-cancer implications of TACC3, our study aimed to analyze the functional role of TACC3 in pan-cancer and validate it through experimental investigations in lung adenocarcinoma. Methods: We first employed various bioinformatics techniques to investigate the expression and prognostic significance of TACC3 in pancancer. Subsequently, we analyzed the correlation between TACC3 and immune infiltration, immune checkpoints, drug sensitivity, as well as the prediction of immune therapy response. Finally, we validated the association between TACC3 and the proliferation of lung adenocarcinoma, as well as its resistance to docetaxel, through in vitro experiments. Results: Here, TACC3 exhibited high expression in human cancers and was associated with poor prognosis in various cancer types. It was also involved in immune infiltration and demonstrated a strong predictive ability for immune therapy response. Through drug sensitivity prediction, we further identified a potential association between TACC3 and docetaxel resistance, which was subsequently validated in lung adenocarcinoma. Conclusion: Our investigation of TACC3 revealed its potential as a promising target both for immunosuppression and docetaxel resistance in pan-cancer, especially in lung adenocarcinoma.
DOI: 10.6084/m9.figshare.27618927
title: Supplementary Material for: Analysis of Stroke Burden in China from 1990 to 2021 and Projections for the Next Decade

description: Introduction: This study aims to describe the temporal trends of stroke burden in different age and sex groups in China from 1990 to 2021, including incidence, prevalence, mortality, and disability-adjusted life years (DALYs), and to compare these data with global figures.
Methods: Using data from the Global Burden of Disease (GBD) database from 1990 to 2021, we analyzed changes in stroke burden in China and globally. The average annual percentage change (AAPC) was calculated using Joinpoint software to reflect trends. Stroke burden differences across various age groups and sexes were compared, and the ARIMA model was utilized for future projections. 
Results: Between 1990 and 2021, the age-standardized incidence rate (ASIR) of stroke in China decreased from 226.938 to 204.753 per 100,000, while the global ASIR decreased from 180.973 to 141.553 per 100,000. The age-standardized prevalence rate (ASPR) in China increased from 1167.425 to 1301.42 per 100,000, whereas the global ASPR decreased from 1201.111 to 1099.31 per 100,000. The age-standardized mortality rate (ASMR) in China fell from 242.18 to 138.029 per 100,000, while the global ASMR decreased from 144.313 to 87.454 per 100,000. China's age-standardized DALY rate (ASDR) declined from 4834.791 to 2648.025 per 100,000, whereas the global ASDR decreased from 3078.952 to 1886.196 per 100,000. The AAPCs for ASIR, ASPR, ASMR, and ASDR in China were -0.370%, 0.326%, -1.793%, and -1.933%, respectively, compared to -0.291%, -0.807%, -1.601%, and -1.570% globally from 1990 to 2021. Age and sex significantly influenced the stroke burden, with higher incidence and mortality rates in males than in females. Projections for the next decade indicate that stroke incidence in China will remain stable, with an expected rise in ASPR, and declines in ASMR and ASDR. Globally, ASIR is expected to decline, while ASPR will rise, and ASMR and ASDR will continue to decrease.
Conclusion: From 1990 to 2021, the incidence, mortality, and DALYs of stroke in China have decreased, while the prevalence has increased. Stroke burden is age-related, with higher prevalence in older adults and higher mortality in the elderly. Males are more susceptible to stroke and have a higher risk of death. Over the next decade, stroke prevalence in China is expected to rise, posing challenges due to population aging, even as mortality and disability rates decline. Sustained public health efforts will be necessary.
DOI: 10.6084/m9.figshare.27619173
title: Supplementary Material for: Seasonal differences of 25-hydroxyvitamin D concentrations in children and adolescents from Mexico City and Metropolitan Area

description: Introduction: Vitamin D deficiency is associated with bone metabolism and immune disorders. Radiation's seasonal variation affects vitamin D status more at the poles. In Mexico, near the equator, there have been reports of 10-20% vitamin D deficiency in children. There is no consensus on the definition of vitamin D deficiency, different organizations consider that a vitamin D level should be above 20 to 30 ng/ml. This study aimed to analyze vitamin D serum concentrations in children and adolescents from Mexico City and the Metropolitan Area (MA) during different seasons. Methods: Cross-sectional study in children and adolescents aged 5-20 years from Mexico City and Metropolitan Area, from autumn 2016 to winter 2017. Variables of interest such as anthropometric measurements, food consumption, and physical activity were analyzed. Results: A total of 816 children and adolescents were included. A high frequency of vitamin D deficiency was detected in 40.7% of the sample. The lowest vitamin D status occurred in winter 2016 and winter 2017. Conclusion: We found a higher frequency of vitamin D deficiency during winter in children and adolescents in Mexico City and MA. This risk persisted after adjusting for age, sex, BMI Z-score, milk consumption, physical activity, and screen time.
DOI: 10.6084/m9.figshare.27619368
title: Supplementary Material for: Genetic Association of the Ins/Del Variant of ACE and Risk of Cardiomyopathy: A Case-Control Study and Updated Meta-Analysis

description: Introduction: Cardiomyopathy, is a complex condition influenced by multiple genes and environmental factors. It has been suspected that cardiomyopathy is affected by the ACE gene's I/D polymorphism. Our study aimed to evaluate the association between this polymorphism and cardiomyopathy risk in the Jammu population of North India, alongside a meta-analysis to determine the specific risks associated with different types of cardiomyopathy. Method: In the case-control study, we opted for a convenient sampling technique to gather patients from hospitals. Meanwhile, for the meta-analysis registered under PROSPERO with CRD42024519763, and in line with PRISMA guidelines, we accessed online databases and applied predefined inclusion criteria. Data extraction and quality assessment were performed using the Newcastle-Ottawa scale. Statistical analysis included genotypic frequencies, Hardy-Weinberg equilibrium testing, logistic regression models, and assessments for heterogeneity and publication bias. Result: The case-control study revealed a significant association between the ACE I/D risk variant and cardiomyopathy risk in the Jammu population (OR: 1.30, CI [1.04-1.63], p-value=0.021). Furthermore, a total of 34 studies were fund-eligible for the meta-analysis and demonstrated a significant association between the risk variant and both dilated (OR: 1.25, CI [1.03-1.50], p-value=0.022) and hypertrophic (OR: 1.31, CI [1.0876-1.5776], p-value = 0.004446) cardiomyopathy. Conclusion: Our study found a significant association between the I/D polymorphism and cardiomyopathy risk in the Jammu population. Further, the meta-analysis strengthens the findings by consistently linking the ACE I/D polymorphism to both dilated and hypertrophic cardiomyopathy. These results underscore the importance of genetic factors in cardiomyopathy risk assessment and further research is needed to understand the underlying mechanisms and potential therapeutic implications.
DOI: 10.6084/m9.figshare.27619872
title: Supplementary Material for: Gender-specific differences in recurrence and progression following BCG instillation for NMIBC

description: Introduction: To assess gender-specific differences in recurrence-free (RFS), progression-free (PFS), cancer-specific survival (CSS) and overall survival (OS) among patients with intermediate or high-risk non-muscle invasive bladder cancer (NMIBC) receiving BCG is the primary aim of this systematic review and meta-analysis.
Methods: In July 2023, we performed a literature search using MEDLINE, Embase and Cochrane Library. This study was prospectively registered at PROSPERO (CRD 2023443269). The detailed review protocol is accessible via CRD. 
Results: The systematic literature search identified 6,723 studies, of which 38 fulfilled the inclusion criteria. Random effect meta-analysis for RFS, based on data from 24 studies, revealed no statistically significant gender-specific difference (HR comparing males to females=0.9618, 95% CI: 0.8408-1.1003, p=0.5707). Similarly, for PFS, incorporating data from 14 studies, no statistically significant difference (HR =0.9540, 95% CI: 0.7709- 1.1805, p=0.6648), for CSS, analysis of data from three studies yielded no statistically significant difference (HR =0.9228, 95% CI: 0.6196-1.3743, p=0.6925), and for OS, based on data from two studies, no statistically significant difference was observed (HR = 1.1436, 95% CI: 0.5092-2.5684, p=0.7452). The risk of bias assessment indicated an overall moderate to high risk of bias.
Conclusion: The findings indicate no association between gender and oncologic outcomes following BCG.