cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18686712
title: Linked collectors and determiners for: KUBI Mammalogy Collection.

description: Natural history specimen data linked to collectors and determiners held within, "KUBI Mammalogy Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d04e739-98a9-4e16-9970-8f8f3bf9e9e3 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d04e739-98a9-4e16-9970-8f8f3bf9e9e3. Formatted as a Frictionless Data package.
DOI: 10.57723/kds592032
title: Data for "In silico exploration of osteoclast precursor inhibition for preventing rapid bone loss after denosumab discontinuation"

description: This repository contains original data supporting the main figures in the manuscript "In silico exploration of osteoclast precursor inhibition for preventing rapid bone loss after denosumab discontinuation" by Kim et al.
description: '***.dat' files are source data for each graph.
description: '***.vtk' files are source binary data to visualize cancellous bone images by ParaView.
DOI: 10.57723/kds596917
title: Photo ID Catalog of Killer Whales in the Nemuro Strait (Rausu), Hokkaido, Japan (2010‒2018)

description: This catalog presents individual identification photographs of killer whales (Orcinus orca) surveyed in the Nemuro Strait (off the coast of
Rausu, Hokkaido, Japan) by the University Alliance for Hokkaido Orca Research Project (Uni-HORP) between 2010 and 2018. A total of 277 killer whales were individually identified and documented. In addition, 41 whales observed between 2016 and 2018 but excluded from registration — due to indistinct saddle patches (e.g., calves) or low-quality photographs — are provided in the appendix.
DOI: 10.57723/kds604362
title: 標茶町（京都大学・北海道研究林構内）で観察されたセグロカッコウ

description: 種名・観察個体数：セグロカッコウ Cuculus micropterus 　1羽
description: 観察者：古田　卓
description: 観察場所：北海道川上郡標茶町
description: 観察距離：30m
description: 観察日：2024年6月21日
description: 収集に用いた機器：フジフィルムxpro-2で、テレコンバーターXF2X TC WR を装着しXF100-400mm F4.5-5.6 R LM OIS WRのレンズを用いた。35mm判換算1,219mm相当
DOI: 10.57723/kds605652
title: raw data for Matsui S PNAS paper

description: raw data for Matsui S PNAS paper
DOI: 10.57723/kds591970
title: Fertilization turns a rubber plantation from sink to methane source

description: Over 1.5 years, we measured soil CH4 fluxes biweekly in an experimental rubber plantation with four distinct fertilization treatments to evaluate their impact on the soil CH4 uptake. we also monitored soil CH4 concentration gradients, mineral N and PO43- availability using ion exchange resin bags, and other edaphic factors. Additionally, we measured CH4 emissions from the tree trunk surface.
DOI: 10.5281/zenodo.10583169
title: Linked collectors and determiners for: Royal Botanic Gardens, Kew - Economic Botany Collection Specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Royal Botanic Gardens, Kew - Economic Botany Collection Specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d31211e-350e-492a-a597-34d24bbc1769 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d31211e-350e-492a-a597-34d24bbc1769. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686715
title: Linked collectors and determiners for: Royal Botanic Gardens, Kew - Economic Botany Collection Specimens.

description: Natural history specimen data linked to collectors and determiners held within, "Royal Botanic Gardens, Kew - Economic Botany Collection Specimens". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d31211e-350e-492a-a597-34d24bbc1769 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d31211e-350e-492a-a597-34d24bbc1769. Formatted as a Frictionless Data package.
DOI: 10.57723/kds598354
title: Dataset for "Temperature dependence of charge-to-spin conversion in rhombohedral (110) bismuth thin film"

description: 実験データ
DOI: 10.57723/kds599178
title: Data for "Are trees source or sink of methane in a cool-temperate mountain forest?"

description: The files contain the data used in the article "Are trees source or sink of methane in a cool-temperate mountain forest?". Content descriptions are in the pdf file
DOI: 10.57723/kds590480
title: Data set for the Long-term changes in nitrate runoff in a temperate forest catchment in Japan: multiple ecosystem responses following a die-back disturbance by pine wilt disease

description: Date used for the manuscript entitled "Long-term changes in nitrate runoff in a temperate forest catchment in Japan: multiple ecosystem responses following a die-back disturbance by pine wilt disease"
DOI: 10.57723/kds594279
title: Norm1ToriHNP for GAP 4 ver.2025.07.18

description: This code provides algorithms related to computations of total obstruction to the Hasse norm principle.
DOI: 10.57723/kds596597
title: Numerical data for "Slip-flow theory for thermo-osmosis based on a kinetic model with near-wall potential"

description: Numerical values of figures 4-10 are provided in ASCII format. Visualization files (*.lay) for software Tecplot are also included.
DOI: 10.57723/kds587378
title: Research data of "Coherent photoelectrical readout of single spins in silicon carbide at room temperature"

description: Experimental and simulation data of the main figures and the supplementary figures
description: 室温下でSiC中の単一スピン情報の電気的読み出しを実現 --高効率な電気的読み出しを実証し、量子デバイスの集積化に道拓く-- . 京都大学プレスリリース. 2025-04-16.
DOI: 10.18112/openneuro.ds006072.v1.0.8
title: Psilocybin Precision Functional Mapping (data from Psilocybin desynchronizes the human brain)
DOI: 10.57723/kds590481
title: Prey preference of Amblyseius andersoni (Acari: Phytoseiidae)

description: Prey-stage preference and prey preference, effect of antipredator behavior, effect of providing prey ratios and effect of temperatures of predatory mite Amblyseius andersoni.
DOI: 10.57723/kds610003
title: Data for "Photoelectrical detection and characterization of divacancy and PL5–PL7 spins in silicon carbide"

description: Experimental data of ODMR and PDMR spectra (Figs. 1c,d), ODMR and PDMR intensities (Fig. 2), Rabi oscillations (Figs. 3b-g, S2c-d), Rabi frequencies (Figs. 3f-g), two-frequency PDMR spectra (Fig. 4b), and background currents and contrasts (Fig. S1).
DOI: 10.57723/kds595504
title: 国立歴史民俗博物館 法隆寺建造物古材（登録外） 年輪分析データ

description: 文化財科学会誌の原稿に用いた年輪データ
DOI: 10.5281/zenodo.10583171
title: Linked collectors and determiners for: Census of plant species in Bonou forest reserve (Southern Benin).

description: Natural history specimen data linked to collectors and determiners held within, "Census of plant species in Bonou forest reserve (Southern Benin)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d37d177-141a-4bcd-afdb-d5c80d326504 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d37d177-141a-4bcd-afdb-d5c80d326504. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686717
title: Linked collectors and determiners for: Census of plant species in Bonou forest reserve (Southern Benin).

description: Natural history specimen data linked to collectors and determiners held within, "Census of plant species in Bonou forest reserve (Southern Benin)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d37d177-141a-4bcd-afdb-d5c80d326504 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d37d177-141a-4bcd-afdb-d5c80d326504. Formatted as a Frictionless Data package.
DOI: 10.57723/kds609944
title: Plot data of the research paper "Optically-trapped particle tracking velocimetry" from Physical Review Fluids

description: Numerical values of data in Figs 3, 4, 5, 6, and 8.
DOI: 10.57723/298947
title: Supplementary datasets for the attached paper "Comprehensive gene expression profiling of the neural plate border in ascidian embryos: Insights into evolutionary origins of vertebrate neural crest, neurogenic placode, and median fin fold cells" of the doctoral thesis "Evolutionary developmental analysis of the neural plate border and tail bud in embryos of ascidians and amphioxus"

description: 博士論文「Evolutionary developmental analysis of the neural plate border and tail bud in embryos of ascidians and amphioxus （ホヤ胚およびナメクジウオ胚を用いた神経板境界および尾芽についての進化発生学的解析）」の添付論文「Comprehensive gene expression profiling of the neural plate border in ascidian embryos: Insights into evolutionary origins of vertebrate neural crest, neurogenic placode, and median fin fold cells（ホヤ胚における神経板境界の包括的遺伝子発現プロファイリング – 脊椎動物の神経堤・頭部プラコード・正中膜ヒレの進化的起源への知見）」に付随する表データ。
DOI: 10.57723/kds609092
title: 占領期石油行政資料目録

description: 小堀聡「占領期石油行政資料目録」（京都大学人文科学研究所『人文学報』第126号、2026年）のうち、目録部分のExcelファイル
DOI: 10.57723/kds605755
title: Data related to Upscaling of soil methane fluxes from topographic attributes derived from a digital elevation model in a cold temperate mountain forest

description: The csv file contains all data used in the related article. The pdf file gives details about variables in the csv file.
DOI: 10.5281/zenodo.18686720
title: Linked collectors and determiners for: Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region.

description: Natural history specimen data linked to collectors and determiners held within, "Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d5da860-7160-4a15-b6d3-44fec0bab183 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d5da860-7160-4a15-b6d3-44fec0bab183. Formatted as a Frictionless Data package.
DOI: 10.57723/298946
title: Supplementary datasets for "Evolutionary developmental analysis of the neural plate border and tail bud in embryos of ascidians and amphioxus"

description: 博士論文「Evolutionary developmental analysis of the neural plate border and tail bud in embryos of ascidians and amphioxus （ホヤ胚およびナメクジウオ胚を用いた神経板境界および尾芽についての進化発生学的解析）」に付随する補足表データ。
description: 「Supplementary_table_29.csv」を追加（2026-01-21）
DOI: 10.17592/001.2025112802
title: Barrow Canyon transport calculated from JAMSTEC's mooring

description: Bottom-tethered short moorings have been deployed at the mouth of Barrow Canyon since September 2000. These moorings measure ocean temperature, salinity, and currents. Heat transport through Barrow Canyon was calculated from the JAMSTEC moorings located at the canyon mouth. Details of the calculation are described in Itoh et al. (2013) and Itoh et al. (2026).
Itoh, M., S. Nishino, Y. Kawaguchi, and T. Kikuchi (2013), Barrow Canyon volume, heat, and freshwater fluxes revealed by long-term mooring observations between 2000 and 2008, J. Geophys. Res. Oceans, 118, 4, 363-4, 379, doi:10.1002/jgrc.20290.
Itoh, M., S. Nishino, T. Kikuchi, H. Melling, S. Zimmermann, W. J. Williams, E. C. Carmack (2026). Increased heat transport through Barrow Canyon and its impact on subsurface warming in the western Arctic Ocean. J. Geophys. Res. Oceans, 131, https://doi.org/10.1029/2025JC022717.
The reference salinity used to calculate freshwater transport and content was 34.8, following Aagaard and Carmack (1989). The salinity-dependent in situ freezing temperature was used as the reference for calculating heat content and heat transport.
DOI: 10.5281/zenodo.10583173
title: Linked collectors and determiners for: Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region.

description: Natural history specimen data linked to collectors and determiners held within, "Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d5da860-7160-4a15-b6d3-44fec0bab183 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d5da860-7160-4a15-b6d3-44fec0bab183. Formatted as a Frictionless Data package.
DOI: 10.57723/kds587685
title: The changes in CDKN1B expression induced by miR-222-3p mimic or inhibitor in Patient T2 and T3 (Supplemental Figure 5)

description: Relative expression level of CDKN1B mRNA was quantified by qPCR. β actin was used as internal control. The transfection experiment was performed once per patient and qPCR analysis was conducted three times. Data are presented as the mean ± SEM from three wells. Asterisks (*) indicate significant differences (p &lt;0.05 vs NC).
DOI: 10.57723/289564
title: BCAlgTori for GAP 4 ver.2022.01.27

description: This code provides algorithms for birational classification for algebraic tori.
DOI: 10.57723/kds596956
title: 調査票（クラフトビール醸造所の全国悉皆調査）

description: 2024年12月に実施した「クラフトビール醸造所の全国悉皆調査」の調査票
DOI: 10.57723/kds610307
title: Data for Intimate relationship between spin configuration in the triplet pair and superconductivity in UTe2

description: このデータはUTe2のNMR等測定データである。
DOI: 10.57723/kds610147
title: Cloacal discharge of Ptyas semicarinata

description: 2個体のオスのリュウキュウアオヘビが雄間闘争を行った後、一方の個体が逃走し、もう一方の個体がこれを追跡して噛みついた。噛みつかれた個体は直後に排泄物を放出した。本動画は、この噛みつき行動およびそれに続く排泄物放出を記録したものである。蛇類における排泄物の放出は、これまで対捕食者や雌雄間の行動において報告されているが、雄間闘争に関連した記録は本例が初めてである。
description: After male–male combat between two male Ptyas semicarinata, one individual fled and was pursued by the other, which subsequently bit the fleeing snake. The bitten individual immediately released feces. This video documents the biting behavior and the subsequent release of feces. In snakes, fecal release has been reported in antipredator contexts and during male–female interactions, but this represents the first record associated with male–male combat.
DOI: 10.57723/kds598426
title: Dataset for "Observation of orbital Hall effect in Si"

description: Experimental dataset for the manuscript titled "Observation of orbital Hall effect in Si"
DOI: 10.5281/zenodo.10583175
title: Linked collectors and determiners for: Marine Biological Reference Collections: CBMR-General (ICM-CSIC).

description: Natural history specimen data linked to collectors and determiners held within, "Marine Biological Reference Collections: CBMR-General (ICM-CSIC)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d743188-1e65-4d99-a814-fa3fd51f1490 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d743188-1e65-4d99-a814-fa3fd51f1490. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686721
title: Linked collectors and determiners for: Marine Biological Reference Collections: CBMR-General (ICM-CSIC).

description: Natural history specimen data linked to collectors and determiners held within, "Marine Biological Reference Collections: CBMR-General (ICM-CSIC)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d743188-1e65-4d99-a814-fa3fd51f1490 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d743188-1e65-4d99-a814-fa3fd51f1490. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686722
title: Linked collectors and determiners for: SJRP-Fungi - Herbário de fungos de São José do Rio Preto.

description: Natural history specimen data linked to collectors and determiners held within, "SJRP-Fungi - Herbário de fungos de São José do Rio Preto". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d833521-e2d0-4bed-9ed2-4b9374b15527 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d833521-e2d0-4bed-9ed2-4b9374b15527. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583177
title: Linked collectors and determiners for: SJRP-Fungi - Herbário de fungos de São José do Rio Preto.

description: Natural history specimen data linked to collectors and determiners held within, "SJRP-Fungi - Herbário de fungos de São José do Rio Preto". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d833521-e2d0-4bed-9ed2-4b9374b15527 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d833521-e2d0-4bed-9ed2-4b9374b15527. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686723
title: Linked collectors and determiners for: Las familias Polyporaceae sensu stricto y Albatrellaceae en México.

description: Natural history specimen data linked to collectors and determiners held within, "Las familias Polyporaceae sensu stricto y Albatrellaceae en México". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d8ade61-ffe9-4950-a3d2-26c99ca28b15 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d8ade61-ffe9-4950-a3d2-26c99ca28b15. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583179
title: Linked collectors and determiners for: Las familias Polyporaceae sensu stricto y Albatrellaceae en México.

description: Natural history specimen data linked to collectors and determiners held within, "Las familias Polyporaceae sensu stricto y Albatrellaceae en México". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1d8ade61-ffe9-4950-a3d2-26c99ca28b15 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1d8ade61-ffe9-4950-a3d2-26c99ca28b15. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583181
title: Linked collectors and determiners for: New records of Trichoceridae (Diptera) from the island of Mallorca .

description: Natural history specimen data linked to collectors and determiners held within, "New records of Trichoceridae (Diptera) from the island of Mallorca ". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1db0b9e6-7d13-47be-ad0f-b59cf4181f17 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1db0b9e6-7d13-47be-ad0f-b59cf4181f17. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.18686724
title: Linked collectors and determiners for: New records of Trichoceridae (Diptera) from the island of Mallorca .

description: Natural history specimen data linked to collectors and determiners held within, "New records of Trichoceridae (Diptera) from the island of Mallorca ". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/1db0b9e6-7d13-47be-ad0f-b59cf4181f17 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/1db0b9e6-7d13-47be-ad0f-b59cf4181f17. Formatted as a Frictionless Data package.
DOI: 10.15468/dl.gutfb5
title: Occurrence Download

description: A dataset listing the 4538 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "Geometry POLYGON((151.26694 -29.29605,153.48027 -29.28224,153.74288 -28.67896,153.4022 -27.04654,153.28864 -25.73351,151.13811 -25.80449,151.26694 -29.29605))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset's 4538 records were derived from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028163-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13626178
title: Spatial Transcriptomics data (GeoMx) of locus coeruleus dopamine cells in control and PD subjects

description: The repository includes Spatial Transcriptomic datasets generated by Nanostring GeoMx (Hu WTA) analysis of locus coeruleus TH+ cells from Controls (n=9), early Parkinsons Disease (ePD, n=8) and late Parkinsons Disease (lPD, n=2). A total 39 Regions of Interest were analysed. The raw and processed counts and metadata are provided as an R Seurat object (geomx_vila_thmask.rds). The scripts used for low level data processing are described in https://github.com/zchatt/ASAP-SpatialTranscriptomics/blob/main/geomx/lowlevel/README.md.

Tissue samples from pathologically confirmed stage IV Lewy body PD (early-PD), stage VI Lewy body PD (late-PD)(Braak, Del Tredici et al. 2003) and controls without the neurological or neuropathological disease were obtained from the Sydney Brain Bank. The study was approved by the University of Sydney Human Research Ethics Committee (2021/845). All cases with PD were levodopa-responsive and fulfilled the UK Brain Bank Clinical Criteria for a diagnosis of clinical PD (Hughes, Ben-Shlomo et al. 1992) with no other neurodegenerative conditions. 

Cells were not extracted. Tissue sections were cut from FFPE blocks of post-mortem human midbrains at 6µm on a rotary microtome (HistoCore MULTICUT, Leica Biosystems) and mounted on Series 2 adhesive microscope slides (Trajan Scientific Medical, AU) for processing for spatial trranscriptomics. To remove the paraffin, slides were incubated in the oven at 60°C for 1hr and then submerged in HistoChoice Clearing Agent (Sigma-Aldrich, H2779) for 2x7mins, followed by rehydration in decreasing ethanol concentrations (100% ethanol for 2x3mins, 95% ethanol for 3mins, 70% ethanol for 3mins) and distilled H2O for 3mins. 

Tissue sections were immunohistochemically stained for tyrosine hydroxylase and Regions of Interest (ROIs) processed following Nanostring GeoMx® Digital Spatial Profiler using the manufacturer’s instructions. Libraries were sequenced on Illumina Novaseq 6000 platform using NovaSeq SP 100 cycle kit (XP workflow, 27-8-8-27).

This research was funded in whole or in part by Aligning Science Across Parkinson’s (ASAP-020505) through the Michael J. Fox Foundation for Parkinson’s Research (MJFF). For the purpose of open access, the author has applied a CC BY 4.0 public copyright license to all Author Accepted Manuscripts arising from this submission.