cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15771916
title: Diagnostic and therapeutic approach to renal fragility_dataset

description: Renal frailty is a silent, premorbid condition that predisposes to suffering from acute kidney disease, and results from the ineffectiveness (due to wear, pathological distortion, inhibition or occupation) of the homeostatic adaptation mechanisms of renal function. This project, as a continuation of the main line of research in our group, aims to validate in three different field test contexts, the diagnostic system we have previously generated for detecting renal frailty. The project also aims to develop treatments for renal frailty for a prophylactic intervention that prevents the development of acute kidney disease. These treatments are directed at targets encompassing key etiopathological mechanisms in the development of renal frailty, such as mitochondrial damage and the associated oxidative stress. In the diagnostic field, the project will apply the diagnostic system to identify frail patients before being subjected to three types of interventions potentially harmful to their kidneys (imaging tests with iodinated contrasts, cardiac surgery, and post-kidney transplantation). In the therapeutic field, the project will carry out a first phase of screening of a panel of mitochondrial protectors and antioxidants to select the most effective candidates, in cell culture models. And a second validation phase of the chosen candidates, in animal models that replicate the complete pathophysiological context of renal frailty.
DOI: 10.15468/dl.suewgs
title: Occurrence Download

description: A dataset containing 748688 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Naturalis Biodiversity Center (NL) - Lepidoptera"
 ]
}

 The dataset includes 748688 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080758-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.22n7ju
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Potorous gilbertii (Gould, 1841)"
 ]
}

 The dataset includes 26 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080772-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q44uwh
title: Occurrence Download

description: A dataset containing 106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Onychogalea lunata (Gould, 1840)"
 ]
}

 The dataset includes 106 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080771-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25921/cqr5-ga34
title: Water temperature, salinity and other measurements from XBT and CTD taken from the WAKATAKA MARU, SOYO MARU, and HAKUHO MARU in the North Pacific and Coastal N Pacific from 1994-09-02 to 2003-09-30 (NCEI Accession 0054244)

description: Water temperature, salinity and other measurements from XBT and CTD instruments taken from the WAKATAKA MARU, SOYO MARU and HAKUHO MARU in the North Pacific and Coastal N Pacific from 1994 to 2002. T5 XBT/CTD comparison experiment data from 4 cruises off of Japan, performed by Shoichi Kizu, Tohoku University.
DOI: 10.7910/dvn/acmsuv
title: Replication Data for: "Broken Promises - Evaluating an Incomplete Startup Business Program"

description: This repository contains all materials required to replicate the analysis presented in the article “Broken Promises: Evaluating an Incomplete Startup Business Program”. The study evaluates the socio-economic and psychological/behavioral consequences of a terminated youth business loan program in South Sudan. Included are: 
i) Cleaned survey data from baseline and endline rounds 
ii) Replication code (Stata) for the main results and robustness checks. 
All personally identifiable information (PII) has been removed or anonymized according to World Bank ethical review standards. The materials are intended for replication, validation, and further academic research. 

Citation: Budjan, Angelika, Utz Pape and Laura Ralston 2025, "Replication Data for: "Broken Promises - Evaluating an Incomplete Startup Business Program"", https://doi.org/10.7910/DVN/ACMSUV, Harvard Dataverse.
DOI: 10.57996/cran.ceres-2695
title: Dataset "Strain data from a superconducting magnet coil, measured using optical fibre segment interferometry"

description: The data provided consists of a time series of the strain record around the entire circumference of the coil, and over 1 quadrant of the coil.
description: An array of optical fibre segment interferometers were deployed in a superconducting magnet to monitor the strain during energisation of the coil. Data was recorded as the current was increased from 0 amps to 90 amps, and then decreased to 0 Amps.
DOI: 10.5281/zenodo.15773618
title: The complex interaction between megaherbivores, climate and fire has shaped the evolution and distribution of plant spinescence across biogeographical realms

description: See 'README.txt' (included in 'Data ') for a description of the files included in this dataset.

Abstract of study: The evolutionary arms race between plants and herbivores has led to numerous adaptations in plants, including prickles, thorns, and spines. However, whether spinescence evolved primarily in response to herbivory, or whether abiotic conditions also played a role, remains unknown.  We integrated phylogenetic, geographic, and trait data for 1,835 species of an ecologically diverse and spiny pantropical lineage – mimosoid legumes – with data for 235 extant and 185 extinct mammalian herbivores >10 kg. Using structural equation models, we assessed how megaherbivores, climate and fire directly or indirectly affected the proportion of spinescent mimosoids across global and continental assemblages. We detected repeated evolution of spinescence throughout the evolutionary history of mimosoids. The proportion of spinescent mimosoids increased with greater richness of both extant and extinct herbivores, as well as with higher drought intensity and temperatures. Fire influenced spinescence indirectly by affecting megaherbivore richness. Importantly, herbivore richness (both extant and extinct), drought, and temperature were significant determinants of spinescence on both continents. However, in the Americas, the effect of extant herbivore richness was stronger, whereas in Africa, extinct herbivore richness had a comparatively greater influence.  We show that large mammals have shaped spinescence in mimosoid legumes, but this happened especially in warm, fire-prone and dry environments, where losing plant parts is particularly costly. Furthermore, the distribution of spines cannot be fully understood without considering past interactions with now extinct megaherbivores, illustrating legacy effects on plant traits.
DOI: 10.5281/zenodo.15773619
title: The complex interaction between megaherbivores, climate and fire has shaped the evolution and distribution of plant spinescence across biogeographical realms

description: See 'README.txt' (included in 'Data ') for a description of the files included in this dataset.

Abstract of study: The evolutionary arms race between plants and herbivores has led to numerous adaptations in plants, including prickles, thorns, and spines. However, whether spinescence evolved primarily in response to herbivory, or whether abiotic conditions also played a role, remains unknown.  We integrated phylogenetic, geographic, and trait data for 1,835 species of an ecologically diverse and spiny pantropical lineage – mimosoid legumes – with data for 235 extant and 185 extinct mammalian herbivores >10 kg. Using structural equation models, we assessed how megaherbivores, climate and fire directly or indirectly affected the proportion of spinescent mimosoids across global and continental assemblages. We detected repeated evolution of spinescence throughout the evolutionary history of mimosoids. The proportion of spinescent mimosoids increased with greater richness of both extant and extinct herbivores, as well as with higher drought intensity and temperatures. Fire influenced spinescence indirectly by affecting megaherbivore richness. Importantly, herbivore richness (both extant and extinct), drought, and temperature were significant determinants of spinescence on both continents. However, in the Americas, the effect of extant herbivore richness was stronger, whereas in Africa, extinct herbivore richness had a comparatively greater influence.  We show that large mammals have shaped spinescence in mimosoid legumes, but this happened especially in warm, fire-prone and dry environments, where losing plant parts is particularly costly. Furthermore, the distribution of spines cannot be fully understood without considering past interactions with now extinct megaherbivores, illustrating legacy effects on plant traits.
DOI: 10.15468/dl.k4nr5q
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 399 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080779-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpxdw2
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is Bhutan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 129 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080778-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/d7qzq8
title: PDB - 3HMX: Crystal structure of ustekinumab FAB/IL-12 complex, random seed # 2 (310K, 37°C, 100 ns) - RMSD, SASA, RMSF, Rg, H-bonds

description: PDB - 3HMX: Crystal structure of ustekinumab FAB/IL-12 complex, (310K, 37°C, 100 ns) - RMSD, SASA, RMSF, Rg, H-bonds. Random seed #2
DOI: 10.15468/dl.cgxqzu
title: Occurrence Download

description: A dataset containing 969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 969 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080777-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15738709
title: Nasopharyngeal and oropharyngeal microbiome of goat farmers and rural residents in the Netherlands

description: This dataset consists of a ready-to-use phyloseq S4 object (ps_filtered_zenodo.Rds) containing three components:



An amplicon sequence variant (ASV) table

A taxonomy table

Sample metadata (a separate metadata description file is included (Metadata_codebook_microbiome.xlsx)


Additional metadata can be made available upon request. 

The dataset was generated by processing paired-end 16S rRNA gene sequencing reads using the DADA2 pipeline (Callahan et al., 2016; v1.16.0), with the following parameters: maxEE = 2 and truncLen = c(200, 150). ASVs were inferred directly from quality-filtered reads. The data has undergone pre-processing steps to remove contamination and low quality samples (see details below in the notes).

The analysis scripts associated with this dataset are available via Zenodo at 10.5281/zenodo.15773127, which is a release archived from the GitHub repository: https://github.com/BeatriceCornuHewitt/URT_microbiome_livestock_exposure



Note:

The phyloseq object provided here has undergone downstream filtering and decontamination. For detailed information on data cleaning and preprocessing steps used in subsequent analyses, please refer to the script 3_clean_phyloseq.Rmd in 10.5281/zenodo.15773127. This phyloseq is the resulting data from this processing script. In brief, pre-processing involved: Removal of contaminants and low-quality samples by applying the decontam package and manual checks, and filtering samples with low DNA concentration or read counts. This resulted in 904 NP (824 from residents, 80 from goat farmers) and 1,046 OP samples (951 from residents, 95 from goat farmers) for analysis.
DOI: 10.5281/zenodo.15738710
title: Nasopharyngeal and oropharyngeal microbiome of goat farmers and rural residents in the Netherlands

description: This dataset consists of a ready-to-use phyloseq S4 object (ps_filtered_zenodo.Rds) containing three components:



An amplicon sequence variant (ASV) table

A taxonomy table

Sample metadata (a separate metadata description file is included (Metadata_codebook_microbiome.xlsx)


Additional metadata can be made available upon request. 

The dataset was generated by processing paired-end 16S rRNA gene sequencing reads using the DADA2 pipeline (Callahan et al., 2016; v1.16.0), with the following parameters: maxEE = 2 and truncLen = c(200, 150). ASVs were inferred directly from quality-filtered reads. The data has undergone pre-processing steps to remove contamination and low quality samples (see details below in the notes).

The analysis scripts associated with this dataset are available via Zenodo at 10.5281/zenodo.15773127, which is a release archived from the GitHub repository: https://github.com/BeatriceCornuHewitt/URT_microbiome_livestock_exposure



Note:

The phyloseq object provided here has undergone downstream filtering and decontamination. For detailed information on data cleaning and preprocessing steps used in subsequent analyses, please refer to the script 3_clean_phyloseq.Rmd in 10.5281/zenodo.15773127. This phyloseq is the resulting data from this processing script. In brief, pre-processing involved: Removal of contaminants and low-quality samples by applying the decontam package and manual checks, and filtering samples with low DNA concentration or read counts. This resulted in 904 NP (824 from residents, 80 from goat farmers) and 1,046 OP samples (951 from residents, 95 from goat farmers) for analysis.
DOI: 10.15468/dl.ms3yh8
title: Occurrence Download

description: A dataset containing 1472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1472 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080782-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebt9mf
title: Occurrence Download

description: A dataset containing 1694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1694 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080783-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data348
title: PANACEA Environment Corpus n-grams EN (English)

description: -
description: This data set contains English word n-grams and English word/tag/lemma n-grams in the "Environment" (ENV) domain. N-grams are accompanied by their observed frequency counts. The length of the n-grams ranges from unigrams (single words) to five-grams. The data were collected in the context of PANACEA (http://www.panacea-lr.eu), an EU-FP7 Funded Project under Grant Agreement 248064. The n-gram counts were generated from crawled Web pages that were automatically detected to be in the English language and were automatically classified as relevant to the ENV domain. The ENV domain collection used consisted of approximately 50.5 million tokens. Data collection took place in the summer of 2011.
DOI: 10.15468/dl.nzsgpg
title: Occurrence Download

description: A dataset containing 209 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens L.",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 209 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080784-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3334/cdiac/otg.pacifica_49hh20030930
title: Dissolved inorganic carbon, pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using CTD, Coulometer for DIC measurement and other instruments from the Hakuho Maru in the North Pacific Ocean from 2003-09-30 to 2003-10-17 (NCEI Accession 0112348)

description: This dataset includes chemical, discrete sample, physical and profile data collected from Hakuho Maru in the North Pacific Ocean from 2003-09-30 to 2003-10-17 and retrieved during cruise KH03-2 and PACIFICA_49HH20030930. These data include ALKALINITY, AMMONIUM, DISSOLVED INORGANIC CARBON, DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, NITRITE, PHOSPHATE, SALINITY, SILICATE, WATER TEMPERATURE and pH. The instruments used to collect these data include CTD, Coulometer for DIC measurement and bottle. These data were collected by Nobuo Tsurushima of National Institute of Advanced Industrial Science and Technology (AIST) and Isao Koike of (ORI) Ocean Research Institute, the University of Tokyo as part of the PACIFICA_49HH20030930 dataset.

PACIFICA (PACIFic ocean Interior CArbon) was an international collaborative project for the data synthesis of ocean interior carbon and its related parameters in the Pacific Ocean. The North Pacific Marine Science Organization (PICES), Section of Carbon and Climate (S-CC) supported the project.
DOI: 10.3334/cdiac/otg.carina_06mt19960910
title: pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using CTD, bottle and other instruments from the METEOR in the North Atlantic Ocean from 1996-09-10 to 1996-10-03 (NCEI Accession 0113582)

description: This dataset includes chemical, discrete sample, physical and profile data collected from METEOR in the North Atlantic Ocean from 1996-09-10 to 1996-10-03 and retrieved during cruise 06MT19960910 (06MT365). These data include ALKALINITY, DISSOLVED OXYGEN, HYDROSTATIC PRESSURE, NITRATE, PHOSPHATE, Potential temperature (theta), SALINITY, SILICATE, WATER TEMPERATURE and pH. The instruments used to collect these data include CTD and bottle. These data were collected by Fiz F. Pérez of Institute of Marine Research Vigo (IIM) and Christoph Hemleben of University of Tübingen as part of the CARINA/06MT19960910 dataset.

The CARINA (CARbon dioxide IN the Atlantic Ocean) data synthesis project is an international collaborative effort of the EU IP CARBOOCEAN, and U.S. partners. It has produced a merged internally consistent dataset of open ocean subsurface measurements for biogeochemical investigations, in particular, studies involving the carbon system. The original focus area was the North Atlantic Ocean, but over time the geographic extent expanded and CARINA now includes data from the entire Atlantic, the Arctic Ocean, and the Southern Ocean.
DOI: 10.22008/fk2/txvmfu/dcbf6n
title: mean_snow_line_altitude.tsv

description: Mean snow line altitude
DOI: 10.5281/zenodo.15773588
title: Dataset for paper: "Beyond Nematic and Smectic Liquid Crystal Monomers (LCMs): Identification of Cholesteric LCMs as Another Abundant Class of Liquid Crystal Display-Derived New Pollutants by Target and Suspect Screening"

description: The uploaded Excel file includes the concentrations of targeted and suspect cholesteric liquid crystal monomers (LCMs) in the dust samples collected from an electronic waste dismantling facility in Jiangxi, China. The dataset also contains quality assurance and quality control (QA/QC) data for the analytical procedures, as well as metadata derived from statistical analyses.
DOI: 10.5281/zenodo.15773587
title: Dataset for paper: "Beyond Nematic and Smectic Liquid Crystal Monomers (LCMs): Identification of Cholesteric LCMs as Another Abundant Class of Liquid Crystal Display-Derived New Pollutants by Target and Suspect Screening"

description: The uploaded Excel file includes the concentrations of targeted and suspect cholesteric liquid crystal monomers (LCMs) in the dust samples collected from an electronic waste dismantling facility in Jiangxi, China. The dataset also contains quality assurance and quality control (QA/QC) data for the analytical procedures, as well as metadata derived from statistical analyses.
DOI: 10.5281/zenodo.13951343
title: (R)USLE C Factor Datasets for Germany
title: Mean C factors for municipalities based on agricultural statistic data (1999, 2003, 2007, 2010, 2016, 2020)
title: C factors for German cropland based on five-year crop sequences derived from crop type maps  (2017 - 2021; 2018 - 2022; 2019 - 2023)

description: This dataset contains maps (vector and raster data) of the crop cover and management factor (C factor) of the (Revised) Universal Soil Loss Equation (R)USLE for German cropland and different time-intervalls. 



Mean C factors for German municipalities based on agricultural statistic data (vector data)



Vector data for German municipalities with fixed extend of the year 2010 based on data from the Thünen Agraratlas (https://zenodo.org/records/14197441)

Available years: 1999, 2003, 2007, 2010, 2016, 2020

File: c1000_municipalities_germany.gpkg

Fields:



AGS_2010: Official municipality code (Amtilicher Gemeindeschlüssel: AGS) for German municipalities of the year 2010 (Information on Destatis (Federal Statistical Office of Germany) on AGS) 

MUN_NAME: Name of the municipality

c1000_1999: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999

c1000_2003: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999

c1000_2007: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999

c1000_2010: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999

c1000_2016: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999

c1000_2020: Mean c1000 (C factor * 1000) for cropland in German municipalities in the year 1999



Units: Mean c1000 (C factor * 1000) for cropland in German municipalities. NoData for municipalities with cropland <50 ha.



C factors for German Cropland based on five-year crop sequences derived from crop type maps (raster data)



Raster data in 10 x 10 m resolution for German cropland

Derived from National-scale crop type maps for Germany (https://zenodo.org/records/10640528, https://zenodo.org/records/10645427, https://zenodo.org/records/15309479)

Available time intervals: 2017 - 2021; 2018 - 2022; 2019 - 2023

Files:



c1000_2017_2021.tif

c1000_2018_2022.tif

c1000_2019_2023.tif



Units: c1000 (C factor * 1000) for the crop sequencen of all cropland raster cells within the given time intervals 

The raster datasets are available as cloud optimized GeoTiffs (COG). The rasters can be directly be accessed in QGIS, R, Python or any supported software of your choice using the URLs  (right click on the file -> “copy link address”).




The method for creating the C factor datasets is described in detail in https://doi.org/10.1016/j.iswcr.2025.06.002