cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8096096
title: tcga_luad_cohorts_metadata.tsv

description: This is a metadata table for a cohort of 442 lung adenocarcinoma patients from TCGA investigated in our study. This table contains information about patients' gender, age, stage, vital status and overall survival (days). It also comprises to which cohorts from our study (KRAS mutated (mut), KRAS wild-type (WT), EGFR mut, STK11 mut, STK11 WT, TP53 mut, TP53 WT, PDL1 high, PDL1 low, proximal proliferative subtype, proximal inflammatory subtype, terminal respiratory unit subtype) do patients belong to.
DOI: 10.6084/m9.figshare.8096429
title: A Sign of the Times: Dataset of US Congress signed network backbones from co-sponsorship data, 1973-2016

description: Each tab contains the signed network for a chamber of congress (H = House, S = Senate) in one session (e.g. 93 = 93rd session of congress).<br><br>The first row identifies the representative or senator, with their party affiliation and state; these are square matrices with columns arranged in the same order.<br><br>In each cell, 1 = the congresspeople have a positive relationship, -1 = the congresspeople have a negative relationship, 0 = the congresspeople have no relationship.<br><br>Relationships are inferred from bill co-sponsorship data using the Stochastic Degree Sequence Model; see the following articles for more details:<br>Neal, Z. P. (In press). A sign of the times? Weak and strong polarization in the U.S. Congress, 1973-2016. Social Networks. Doi:10.1016/j.socnet.2018.07.007<br><br>Neal, Z. P. (2014). The backbone of bipartite projections: Inferring relationships from co-authorship, co-sponsorship, co-attendance and other co-behaviors. Social Networks, 39, 84-97. Doi:10.1016/j.socnet.2014.06.001
DOI: 10.6084/m9.figshare.8097503.v1
title: Input_data_figure-code.zip

description: Additional material (Input proxy and instrumental data and code to generate the figures)<br>
DOI: 10.6084/m9.figshare.8095652
title: Data and code from Testosterone reduces the threat premium in competitive resource division

description: This file contains the raw data and code for analyses
DOI: 10.6084/m9.figshare.8096096.v1
title: tcga_luad_cohorts_metadata.tsv

description: This is a metadata table for a cohort of 442 lung adenocarcinoma patients from TCGA investigated in our study. This table contains information about patients' gender, age, stage, vital status and overall survival (days). It also comprises to which cohorts from our study (KRAS mutated (mut), KRAS wild-type (WT), EGFR mut, STK11 mut, STK11 WT, TP53 mut, TP53 WT, PDL1 high, PDL1 low, proximal proliferative subtype, proximal inflammatory subtype, terminal respiratory unit subtype) do patients belong to.
DOI: 10.6084/m9.figshare.8095652.v1
title: Data and code from Testosterone reduces the threat premium in competitive resource division

description: This file contains the raw data and code for analyses
DOI: 10.6084/m9.figshare.8097503.v2
title: Input_data_figure-code.zip

description: Additional material (Input proxy and instrumental data and code to generate the figures)<br>
DOI: 10.6084/m9.figshare.8095622
title: Raw dental microwear data from Dental microwear texture reflects dietary tendencies in extant Lepidosauria despite their limited use of oral food processing

description: Data encloses raw dental microwear data for both dataset including individual scans for all specimens
DOI: 10.6084/m9.figshare.8096429.v1
title: A Sign of the Times

description: Each tab contains the signed network for a chamber of congress (H = House, S = Senate) in one session (e.g. 93 = 93rd session of congress).<br><br>The first row identifies the representative or senator, with their party affiliation and state; these are square matrices with columns arranged in the same order.<br><br>In each cell, 1 = the congresspeople have a positive relationship, -1 = the congresspeople have a negative relationship, 0 = the congresspeople have no relationship.<br><br>Relationships are inferred from bill co-sponsorship data using the Stochastic Degree Sequence Model; see the following articles for more details:<br>Neal, Z. P. (In press). A sign of the times? Weak and strong polarization in the U.S. Congress, 1973-2016. Social Networks. Doi:10.1016/j.socnet.2018.07.007<br><br>Neal, Z. P. (2014). The backbone of bipartite projections: Inferring relationships from co-authorship, co-sponsorship, co-attendance and other co-behaviors. Social Networks, 39, 84-97. Doi:10.1016/j.socnet.2014.06.001
DOI: 10.6084/m9.figshare.8095622.v1
title: Raw dental microwear data from Dental microwear texture reflects dietary tendencies in extant Lepidosauria despite their limited use of oral food processing

description: Data encloses raw dental microwear data for both dataset including individual scans for all specimens
DOI: 10.6084/m9.figshare.8096429.v2
title: A Sign of the Times: Weak and strong polarization in the U.S. Congress, 1973-2016

description: Each tab contains the signed network for a chamber of congress (H = House, S = Senate) in one session (e.g. 93 = 93rd session of congress).<br><br>The first row identifies the representative or senator, with their party affiliation and state; these are square matrices with columns arranged in the same order.<br><br>In each cell, 1 = the congresspeople have a positive relationship, -1 = the congresspeople have a negative relationship, 0 = the congresspeople have no relationship.<br><br>Relationships are inferred from bill co-sponsorship data using the Stochastic Degree Sequence Model; see the following articles for more details:<br>Neal, Z. P. (In press). A sign of the times? Weak and strong polarization in the U.S. Congress, 1973-2016. Social Networks. Doi:10.1016/j.socnet.2018.07.007<br><br>Neal, Z. P. (2014). The backbone of bipartite projections: Inferring relationships from co-authorship, co-sponsorship, co-attendance and other co-behaviors. Social Networks, 39, 84-97. Doi:10.1016/j.socnet.2014.06.001
DOI: 10.6084/m9.figshare.8095502
title: Data Accessibility from Facile fabrication and characterization on alginate microfibres with grooved structure via the microfluidic spinning

description: Raw data used to create figure 2 (as Excel workbooks) has been uploaded as the supplementary material.;Raw data used to create figure 3 (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure 6of shear rate depend on the shear stress (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure 12 (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure S1 (as Excel workbooks) has been uploaded as the supplementary material.
DOI: 10.6084/m9.figshare.8095475
title: Comments on “Unobservable Selection and Coefficient Stability: Theory and Evidence” and “Poorly Measured Confounders are More Useful on the Left Than on the Right”

description: We establish a link between the approaches proposed by Oster (2019) and Pei, Pischke, and Schwandt (2019) which contribute to the development of inferential procedures for causal effects in the challenging and empirically relevant situation where the unknown data-generation process is not included in the set of models considered by the investigator. We use the general misspecification framework recently proposed by De Luca, Magnus, and Peracchi (2018) to analyze and understand the implications of the restrictions imposed by the two approaches.
DOI: 10.6084/m9.figshare.8095475.v1
title: Comments on “Unobservable Selection and Coefficient Stability: Theory and Evidence” and “Poorly Measured Confounders are More Useful on the Left Than on the Right”

description: We establish a link between the approaches proposed by Oster (2019) and Pei, Pischke, and Schwandt (2019) which contribute to the development of inferential procedures for causal effects in the challenging and empirically relevant situation where the unknown data-generation process is not included in the set of models considered by the investigator. We use the general misspecification framework recently proposed by De Luca, Magnus, and Peracchi (2018) to analyze and understand the implications of the restrictions imposed by the two approaches.
DOI: 10.6084/m9.figshare.8095502.v1
title: Data Accessibility from Facile fabrication and characterization on alginate microfibres with grooved structure via the microfluidic spinning

description: Raw data used to create figure 2 (as Excel workbooks) has been uploaded as the supplementary material.;Raw data used to create figure 3 (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure 6of shear rate depend on the shear stress (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure 12 (as Excel workbooks) has been uploaded as the supplementary material.; Raw data used to create figure S1 (as Excel workbooks) has been uploaded as the supplementary material.
DOI: 10.6084/m9.figshare.8095427
title: alligned_collisions1.zip

description: Jupyter notebook contains aligned graphs of 0.0, 0.2, 0.4 offset<br>
DOI: 10.14284/418
title: Maritime Boundaries Geodatabase: High Seas, version 1

description: High Seas from the VLIZ Maritime Boundaries Geodatabase. The United Nations Convention on the Law of the Sea describes the high seas as ‘all parts of the sea that are not included in the exclusive economic zone, in the territorial sea or in the internal waters of a State, or in the archipelagic waters of an archipelagic State.’ In the Maritime Boundaries Geodatabase, Marine Regions makes available most of the maritime areas defined in the Law of the Sea Convention: Exclusive Economic Zones (EEZ), Territorial Seas (TS), Contiguous Zones (CZ), Internal Waters (IW), Archipelagic Waters (AW) and High Seas (HS).
DOI: 10.6084/m9.figshare.8095427.v1
title: alligned_collisions1.zip

description: Jupyter notebook contains aligned graphs of 0.0, 0.2, 0.4 offset<br>
DOI: 10.6084/m9.figshare.8095217
title: European forest vascular plant species list

description: Motivated by the "Waldartenlisten der Farn- und Blütenpflanzen, Moose und Flechten Deutschlands" (https://www.bfn.de/fileadmin/MDB/documents/service/skript299.pdf) an expert gremium around the FLEUR network developed a list of forest vascular plant species for several European regions. FLEUR is a European network of researchers interested in the dynamics of forest plant species in a changing environment (http://www.fleur.ugent.be/).For 24 geographical regions of 13 countries in Western, Central and Northern Europe comprehensive lists of vascular plant species occurring in forests are presented. Lists and assignments to four different species groups with different degrees of association with forests (forest specialists versus forest generalists) are based on vegetation databases, information in floras and other publications, and expert knowledge. The methodology will be presented in an upcoming publication, and an extension to other regions is intended. The forest plant species list serves as a tool for evaluating plant species richness of forests and can be used for various ecological analysis, e.g. temporal changes in forest communities.
DOI: 10.6084/m9.figshare.8095166
title: Supplementary Material for: Antiphospholipid Antibodies: Cognitive and Motor Decline, Neuroimaging and Neuropathology

description: <b><i>Background:</i></b> Few data are available on associations of antiphospholipid (aPL) antibodies with cognitive and motor decline in aging, and cerebrovascular disease on in vivo neuroimaging and postmortem neuropathology. <b><i>Methods:</i></b> This longitudinal, clinical-pathologic study (aPL antibodies, brain infarcts, and cognitive and motor decline in aging), was derived from 2 ongoing community-based cohort studies. A panel of 3 aPL antibodies was assayed in serum from 956 older individuals (mean age = 81.1 years; 72% women). Serum was also tested in a subset for markers of inflammation (C-reactive protein [CRP]) and blood-brain barrier breakdown (matrix metalloproteinases, MMPs). Annual clinical evaluations documented cognitive (17 neuropsychological tests) and motor function including parkinsonism. Cerebrovascular disease data were derived from in vivo neuroimaging and postmortem neuropathologic evaluations (699 individuals). We examined associations of aPL with cognitive and motor decline, other serum markers, neuroimaging, and neuropathology. <b><i>Results:</i></b> Of 956 individuals, 197 (20.6%) had aPL positivity, defined as positivity on any of the assays, at the time of first measurement. During a mean follow-up of 6.6 years (SD 4), overall aPL positivity was not associated with change in global cognition (estimate = –0.005, SE 0.011; <i>p</i> = 0.622) or parkinsonian signs (estimate = –0.003, SE 0.017; <i>p</i> = 0.860). aPL were not associated with serum CRP or MMPs (both <i>p</i> &gt; 0.268). aPL were not associated with in vivo brain magnetic resonance imaging white matter hyperintensities or infarcts (both <i>p</i> &gt; 0.376). Among those autopsied, aPL were not associated with pathologically confirmed brain infarcts, or cerebral atherosclerosis or arteriolosclerosis (all <i>p</i>≥ 0.447). <b><i>Conclusions:</i></b> In older individuals followed longitudinally, aPL do not relate to cognitive or motor decline, inflammation, or cerebrovascular disease on in vivo neuroimaging or postmortem neuropathology.
DOI: 10.6084/m9.figshare.8095031
title: Supplementary Material for: A Prospective Study of the Incidence of Myasthenia Gravis in the East Midlands of England

description: <b><i>Objectives:</i></b> A number of worldwide studies have highlighted a rising incidence of myasthenia gravis (MG) over the past few decades. This is largely due to an increase in numbers in older patients. To establish whether this was a consistent finding in the United Kingdom, we conducted a large, 4-year prospective cohort study of all known patients with new-onset MG in the East Midlands of the United Kingdom. <b><i>Methods:</i></b> Between 2014 and 2018, all 120 patients with a new diagnosis of MG who were residing in the East Midlands were enrolled. <b><i>Results:</i></b> Median age at disease onset was 63 years (78% aged over 50 years) and most patients (57%) were male. The average annual incidence rate (IR) was 17.6/1,000,000 (95% CI 10.7–28.6). IRs remained stable between 2014 and 2018 except for rising IRs in patients over 65 years of age (<i>p</i> value for trend, &lt;0.001). <b><i>Conclusions:</i></b> Twenty years after the last comprehensive prospective incidence survey of MG in the east of England, we have demonstrated a rising incidence. The greatest increases seen were in patients over 65 years. Given the rigorous study methods employed, future replicate prospective studies from the same region will establish whether these rising figures are due to biological factors, independent of improved case ascertainment.
DOI: 10.6084/m9.figshare.8095031.v1
title: Supplementary Material for: A Prospective Study of the Incidence of Myasthenia Gravis in the East Midlands of England

description: <b><i>Objectives:</i></b> A number of worldwide studies have highlighted a rising incidence of myasthenia gravis (MG) over the past few decades. This is largely due to an increase in numbers in older patients. To establish whether this was a consistent finding in the United Kingdom, we conducted a large, 4-year prospective cohort study of all known patients with new-onset MG in the East Midlands of the United Kingdom. <b><i>Methods:</i></b> Between 2014 and 2018, all 120 patients with a new diagnosis of MG who were residing in the East Midlands were enrolled. <b><i>Results:</i></b> Median age at disease onset was 63 years (78% aged over 50 years) and most patients (57%) were male. The average annual incidence rate (IR) was 17.6/1,000,000 (95% CI 10.7–28.6). IRs remained stable between 2014 and 2018 except for rising IRs in patients over 65 years of age (<i>p</i> value for trend, &lt;0.001). <b><i>Conclusions:</i></b> Twenty years after the last comprehensive prospective incidence survey of MG in the east of England, we have demonstrated a rising incidence. The greatest increases seen were in patients over 65 years. Given the rigorous study methods employed, future replicate prospective studies from the same region will establish whether these rising figures are due to biological factors, independent of improved case ascertainment.
DOI: 10.6084/m9.figshare.8095004
title: col_0.4.zip

description: 0.4 offset, updated notebook<br>
DOI: 10.6084/m9.figshare.8095004.v1
title: col_0.4.zip

description: 0.4 offset, updated notebook<br>
DOI: 10.6084/m9.figshare.8094854.v1
title: Genetic determination of sex and shell color in the Pacific abalone Haliotis discus hannai revealed by an integrated linkage map

description: Genotype data for the mapping families; Phenotype data for shell colour and sex.
DOI: 10.6084/m9.figshare.8094767.v1
title: Genetic determination of sex and shell color in the Pacific abalone Haliotis discus hannai revealed by an integrated linkage map

description: Genotypes for the mapping families; Phenotypes for shell colour and sex.
DOI: 10.6084/m9.figshare.8094737
title: Radiation-induced brachial plexus toxicity after SBRT of apically located lung lesions

description: <b>Purpose</b>: To evaluate the rate and dose response of brachial plexus toxicity post stereotactic body radiation therapy (SBRT) of apically situated lung lesions. <b>Material/methods:</b> We retrospectively identified all patients with apically located tumors, defined by the epicenter of the tumor being located superiorly to the aortic arch, and treated with SBRT between 2008 and 2013. Patients with a shorter follow-up than 6 months were excluded. Primary aim was to evaluate radiation-induced brachial plexopathy (RIBP). Dose to the plexus was assessed by a retrospective delineation of the brachial plexus on the CT used for treatment planning. Then, <i>D</i><sub>max</sub>, <i>D</i><sub>0.1cc</sub>, <i>D</i><sub>1cc</sub> and <i>D</i><sub>3.0cc</sub> of the brachial plexus were collected from the dose-volume histograms (DVH) and recalculated to the biologically effective dose (BED) using α/β = 3 Gy. A normal tissue complication probability (NTCP) model, based on four different dose-volume parameters (BED<sub>3,max</sub>, BED<sub>3,0.1cc,</sub> BED<sub>3,1.0cc,</sub> BED<sub>3,3.0cc</sub>) was fitted to the data. <b>Results:</b> Fifty-two patients with 56 apically located tumors were identified. Median prescription dose per fraction was 15 Gy (range 6–17) and median number of fractions was 3 (3–10). With a median follow-up of 30 months (6.1–72) seven patients experienced maximum grade 2 (scored 3 times) or 3 (scored 4 times) RIBP after a median of 8.7 months (range 4.0–31). Three patients had combined symptoms with pain, sensory and motor affection and four patients had isolated pain. Median BED<sub>3,max</sub> for the patients experiencing RIBP was 381 Gy (range 30–524) versus BED<sub>3,max</sub> of 34 Gy (range 0.10–483) for the patients without RIBP. The NTCP models showed a very high predictive ability (area under the receiver operating characteristic curve (AUC) 0.80–0.88). <b>Conclusion:</b> SBRT of apically located lung lesions may cause severe neurological symptoms; for a three-fraction treatment, we suggest that the maximum dose to the plexus should be kept ≤30 Gy (130 Gy BED<sub>3</sub>).
DOI: 10.6084/m9.figshare.8094758
title: Changes in asthma severity in the first year of school and difficulty learning to read

description: <b>Objective:</b> Asthma is a risk factor for poor early reading in children, for reasons that are unclear. This analysis examines the relationship between changes in asthma severity during the first year of school and being in the lowest quartile of reading achievement after 1 year of school. <b>Methods:</b> We used previously unreported data from our cohort study. Parent interviews and teacher questionnaires enquired about asthma and covariates of achievement at school entry (T1) and 12 months later (T2). Asthma severity scores at T1 and T2 showed that in 27 of 51 children with asthma, symptoms improved over the year, whereas in 24, symptoms persisted or worsened. Word and story reading were assessed at T1 and T2. We compared reading achievement at both timepoints between children with asthma and children who had no reported respiratory symptoms between birth and T2 (controls, <i>N</i> = 74), and between those with persistent versus improved symptoms. <b>Results:</b> More children with asthma than controls were in the lowest quartiles for reading. Further, significantly more children in the persistent group compared to the improved group were in the lowest quartiles for word reading (58 versus 30%, respectively) and story reading (54 versus 26%, respectively). School absences, increased behavior problems, stressful life events or parental mental health were not associated with the differences in either comparison. Logistic regression modeling identified persistent asthma as the most important variable associated with being in the lowest quartile of reading after 1 year in school. <b>Conclusions:</b> Active asthma symptoms during early school may influence early reading achievement.
DOI: 10.6084/m9.figshare.8094728
title: Anatomy and systematics of <i>Notohippus toxodontoides</i> Ameghino, 1891 (Mammalia, Notoungulata), from the Miocene of Santa Cruz Province, Argentina

description: The specimens described herein come from the Río Bote locality, Santa Cruz Formation (early Miocene), Santa Cruz Province, Argentina. They include the most complete cranial material of the ‘Notohippidae’ <i>Notohippus toxodontoides</i> and other remains that increase knowledge of the mandible and dentition<i>.</i> The new remains allow extension of the original description proposed by Ameghino in the 19th century and provide data on ontogenetic variation in the dental traits of this species. <i>Notohippus</i> differs from the Deseadan–Colhuehuapian genus <i>Argyrohippus</i> in the following features: discontinuous dentition; C and p1 absent; shorter P2–M3/p2–m3 series; crown of I1 highly curved; upper molars with less developed parastyle and paracone fold, less undulating ectoloph, deeper distolingual groove of M3 directed more lingually and presence of a very shallow distolabial groove; incisiform lower canine; and lower molars with posterolabial angle of talonid more rounded and narrower trigonid valley. As stated in previous works, our phylogenetic analysis indicates that the ‘Notohippidae’ do not constitute a monophyletic group, because <i>Argyrohippus</i>, <i>Notohippus</i>, and Toxodontidae are recovered as a clade. Internal relationships within this clade are not resolved in any of the phylogenetic analyses performed here. The presence of <i>N. toxodontoides</i> in the faunal assemblage found at the Río Bote locality adds to its previous records in Santa Cruz (Kar-Aiken and Cerro Centinela localities) Province, Argentina, and Sierra Baguales locality in Chile.