cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21958/phenotype:1291
title: root-like structures 21d protocol b

description: Manual count of root-like structures formed on root explants after 21 days on SIM following protocol b. Root-like structures were defined as elongated white or transparent structures, often covered with root hairs.
description: Protocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1282
title: shoot primordia 21d protocol a

description: Manual count of regenerated shoot primordia from root explants after 21 days on SIM following protocol a. Shoot primordia were defined as dome-shaped outgrowths with a purple or green colour and clearly organized cellular patterning, indicated by a smooth surface.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1278
title: callus score 15d protocol b

description: Score for callus formation from root explants after 15 days on SIM following protocol b. Callus formation was assigned a score from 0 to 5 based on size and greening.
description: Protocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1272
title: area 15d protocol a

description: Area of root explants after 15 days on SIM following protocol a. The area was calculated automatically in ImageJ by applying a colour threshold to distinguish explants from the background and subtracting the latter to obtain a 2D projection as a proxy for the regenerative potential.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1290
title: undefined structures 21d protocol b

description: Manual count of undefined structures formed on root explants after 21 days on SIM following protocol b. Undefined structures were defined as structures in between roots and shoots (i.e. having characteristics of both).
description: Protocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1283
title: undefined structures 21d protocol a

description: Manual count of undefined structures formed on root explants after 21 days on SIM following protocol a. Undefined structures were defined as structures in between roots and shoots (i.e. having characteristics of both).
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1268
title: shoot primordia 15d protocol a

description: Manual count of regenerated shoot primordia from root explants after 15 days on SIM following protocol a. Shoot primordia were defined as dome-shaped outgrowths with a purple or green colour and clearly organized cellular patterning, indicated by a smooth surface.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1271
title: callus score 15d protocol a

description: Score for callus formation from root explants after 15 days on SIM following protocol a. Callus formation was assigned a score from 0 to 5 based on size and greening.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1279
title: area 15d protocol b

description: Area of root explants after 15 days on SIM following protocol b. The area was calculated automatically in ImageJ by applying a colour threshold to distinguish explants from the background and subtracting the latter to obtain a 2D projection as a proxy for the regenerative potential.
description: Protocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1289
title: shoot primordia 21d protocol b

description: Manual count of regenerated shoot primordia from root explants after 21 days on SIM following protocol b. Shoot primordia were defined as dome-shaped outgrowths with a purple or green colour and clearly organized cellular patterning, indicated by a smooth surface.
description: Protocol b: 7-mm-long apical root segments were excised from 10-day-old seedlings, grown under warm white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 5 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1269
title: undefined structures 15d protocol a

description: Manual count of undefined structures formed on root explants after 15 days on SIM following protocol a. Undefined structures were defined as structures in between roots and shoots (i.e. having characteristics of both).
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1284
title: root-like structures 21d protocol a

description: Manual count of root-like structures formed on root explants after 21 days on SIM following protocol a. Root-like structures were defined as elongated white or transparent structures, often covered with root hairs.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1285
title: callus score 21d protocol a

description: Score for callus formation from root explants after 21 days on SIM following protocol a. Callus formation was assigned a score from 0 to 5 based on size and greening.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.21958/phenotype:1287
title: greening 21d protocol a

description: Greening of root explants after 21 days on SIM following protocol a. Greening was determined automatically in ImageJ as 255 minus the intensity of green values in the area of explants, obtained by subtracting the background with a colour threshold.
description: Protocol a: 7-mm-long apical root segments were excised from 7-day-old seedlings, grown under cool white fluorescent tungsten tubes (70 µM m-2 s-1; 14/10 h light/dark regime) at 21 °C. Next, explants were preincubated on callus induction medium (CIM; B5 supplemented with 2.2 µM 2,4-dichlorophenoxy acetic acid and 0.2 µM kinetin) for 4 days, before being transferred to shoot induction medium (SIM; B5 supplemented with 25 µM 2-isopentenyl adenine and 0.86 µM 3-indole acetic acid).
DOI: 10.5281/zenodo.3948005
title: Data files used in the paper " Multiple subglacial water bodies below the south pole of Mars unveiled by new MARSIS data "

description: <pre>Each file corresponds to a MARSIS radar acquisition on the Ultima Scopuli on Mars. The Data are in ASCII format and they organized as a follow: first row: operating frequency in MHz second row: longitude in degree third row: latitude in degree forth row: spacecraft height from fifth row to the end row: amplitude radar signal The name of the file corresponds to name of the MARSIS orbit</pre>
DOI: 10.5281/zenodo.3948004
title: Data files used in the paper " Multiple subglacial water bodies below the south pole of Mars unveiled by new MARSIS data "

description: <pre>Each file corresponds to a MARSIS radar acquisition on the Ultima Scopuli on Mars. The Data are in ASCII format and they organized as a follow: first row: operating frequency in MHz second row: longitude in degree third row: latitude in degree forth row: spacecraft height from fifth row to the end row: amplitude radar signal The name of the file corresponds to name of the MARSIS orbit</pre>
DOI: 10.25810/pk4z-n050
title: Repeat Observations by Gliders in the Equatorial Region (ROGER)

description: ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).
DOI: 10.5517/ccdc.csd.cc217r68
title: CCDC 1884279: Experimental Crystal Structure Determination

description: Related Article: Mohd Yeshab Ansari, Sumedha Swarnkar, Atul Kumar|2020|Chem.Commun.|56|9561|doi:10.1039/D0CC03726E
DOI: 10.5517/ccdc.csd.cc21bhd9
title: CCDC 1886920: Experimental Crystal Structure Determination

description: Related Article: Ananta Dey, Arunava Maity, Tufan Singha Mahapatra, Eingathodi Suresh, Amal Kumar Mandal, Amitava Das|2020|CrystEngComm|22|5117|doi:10.1039/D0CE00909A
DOI: 10.5517/ccdc.csd.cc22bv1b
title: CCDC 1917041: Experimental Crystal Structure Determination

description: Related Article: Ye-Fei Yang, Xiao-Bo Huang, Wen-Xia Gao, Yun-Bing Zhou, Miao-Chang Liu, Hua-Yue Wu|2020|Org.Biomol.Chem.|18|5822|doi:10.1039/D0OB00601G
DOI: 10.5517/ccdc.csd.cc20lg69
title: CCDC 1864780: Experimental Crystal Structure Determination

description: Related Article: Cecilia C. P. da Silva, Bolaji C. Dayo Owoyemi, Benedito R. Alvarenga-Jr, Natalia Alvarez, Javier Ellena, Renato L. Carneiro|2020|CrystEngComm|22|5345|doi:10.1039/D0CE00723D
DOI: 10.15468/2ex7q8
title: A revision of Othiini. XX. Two new species of Othius, the first record of the genus from Myanmar, and additional records (Coleoptera: Staphylinidae: Staphylininae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Assing, Volker (2018): A revision of Othiini. XX. Two new species of Othius, the first record of the genus from Myanmar, and additional records (Coleoptera: Staphylinidae: Staphylininae). Linzer biologische Beiträge 50 (1): 25-40, DOI: http://doi.org/10.5281/zenodo.3985221
DOI: 10.15468/jpt8gw
title: Two new species of eyeless amphipods from a coastal area in Japan (Crustacea: Amphipoda: Hadziidae, Melitidae), with reinstatement of the genus Paraniphargus Tattersall, 1925

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ariyama, Hiroyuki (2016): Two new species of eyeless amphipods from a coastal area in Japan (Crustacea: Amphipoda: Hadziidae, Melitidae), with reinstatement of the genus Paraniphargus Tattersall, 1925. Journal of Natural History 50: 2277-2297, DOI: 10.1080/00222933.2016.1198838
DOI: 10.24431/rw1k46p
title: Whiskers as a novel tissue for assessing reproductive histories in phocid and otariid species of Northern Pacific Pinnipeds: Laboratory and Biological Validations

description: This data was generated as part of the NPRB 1517 project Assessing reproductive histories using pinniped whiskers. The dataset includes animal information for all samples used in the study as well as the raw and mass adjusted concentrations of progesterone, cortisol and 17b-estradiol hormone concentrations. Two data files are included in this dataset: NPRB1528_data_05.30.2018MK_sampleInfo.csv, and NPRB1528_data_05.30.2018MK_Hormone_results.csv.
DOI: 10.7910/dvn/siweyd/sqxjkd
title: plainRelase.R

description: R script to illustrate how to format a sensitive dataset so it can be fed to the dpRelease.R script to compute privacy-preserving statistics. The produced .RData object stores a list of vectors, each one containing observations of the sensitive data for a given sample.
DOI: 10.7910/dvn/siweyd/ubalvc
title: dpRelease.R

description: R script that computes privacy preserving counts of sensitive data calling the Laplacian mechanism of the psilence library. The script takes as input a list of vectors, each one representing sensitive data observations for a given sample, to compute privacy-preserving counts. By default, the script runs the mechanism 100 times for the 15 values of Epsilon, taking as input a plain release of the sensitive data, as discussed in the paper.
DOI: 10.7910/dvn/siweyd/cmuezs
title: reproduce.R

description: R script that reproduces the results presented in the referred paper https://doi.org/10.7910/DVN/SIWEYD
DOI: 10.24431/rw1k46q
title: Genetic population data from 3 kelp species in the Gulf of Alaska 2016-1019

description: This dataset describes the population genetics of 3 kelp species in Alaska, sugar kelp (Saccharina latissima), split kelp (Hedophylum nigripes), and winged-kelp (Alaria spp.), using 3 molecular markers: mitochondrial DNA, chloroplast DNA, and microsatellite DNA. The dataset is composed of 11 CSV files: nprb-1618-table-05-split-kelp-sample-locations.csv nprb-1618-table-09-winged-kelp-mtDNA-cytochrome-oxidase-I.csv nprb-1618-table-02-sugar-kelp-mtDNA-cytochrome- oxidase-I-sequences.csv nprb-1618-table-06-split kelp-mtDNA-cytochrome-oxidase-I.csv nprb-1618-table-07-split-kelp-mtDNA-cpDNA-Rubisco-rbcL.csv nprb-1618-table-04-sugar-kelp-microsatellite-DNA .csv nprb-1618-table-01-sugar-kelp-sample-locations.csv nprb-1618-table-03-sugar-kelp-cpDNA-Rubisco.csv nprb-1618-table-11-winged-kelp- microsatellite-DNA-location-individual-lineage.csv nprb-1618-table-08-winged-kelp-sample-locations.csv nprb-1618-table-10-winged-kelp-cpDNA-Rubisco-rbcL.csv
DOI: 10.25345/c5c47z
title: MassIVE MSV000085984 - Mycobacterium_Macrophage_Infection_Quantitative_Proteomics
title: Quantitative proteomic analysis of macrophages investigating the effect of preimmunizing cells with microvesicles collected from bacteria.
DOI: 10.15468/uzaqxm
title: A taxonomic review of the genus Exochus Gravenhorst (Hymenoptera: Ichneumonidae: Metopiinae) from South Korea with descriptions of ten new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Choi, Jin-Kyung, Kolarov, Janko, Lee, Jong-Wook (2016): A taxonomic review of the genus Exochus Gravenhorst (Hymenoptera: Ichneumonidae: Metopiinae) from South Korea with descriptions of ten new species. Journal of Natural History 50: 2327-2367, DOI: 10.1080/00222933.2016.1197335, URL: http://dx.doi.org/10.1080/00222933.2016.1197335
DOI: 10.25810/t22a-0f19
title: CMIP3 Zonal Velocity Volumes Near the Equator (3°S–3°N, 160°E–80°W, 0–400 m)

description: ROGER was an NSF-funded project from 2012–2016 (OCE–1233282 and OCE–1232971). This page provides access to the data analyzed in the following publication:

Karnauskas, K. B., J. Jakoboski, T. M. S. Johnston, W. B. Owens, D. L. Rudnick, and R. E. Todd (2020) The Pacific Equatorial Undercurrent in Three Generations of Global Climate Models and Glider Observations. J. Geophys. Res.–Oceans, in revision.

As described in the paper, all CMIP3, CMIP5 and CMIP6 global climate model outputs were initially acquired from the Earth System Grid Federation (ESGF). Monthly means from the 1990s were extracted from each model’s historical experiment (labeled “Climate of the Twentieth Century” [20C3M] in CMIP3, and simply “historical” in CMIP5 and CMIP6). A much-reduced and harmonized version of the entire CMIPx ocean zonal velocity (and potential temperature and salinity for CMIP6) output data set was then produced by retaining the time-means of 3D output within the domain 160°E–80°W, 3°S–3°N, 0–400 m and linearly regridding to a common grid (0.25° in longitude, 0.1° in latitude and 1 m in depth). Sections along 93°W were also saved. The resulting analysis sets are provided freely here. Each item provided links to .mat files for each model, which can be downloaded individually or en masse. The cmipx_table.pdf file provided here is necessary to match model numbers with the official CMIPx model identifiers (e.g., C5_M11.mat = CMIP5 / GFDL CM3).

Related publications:

Rudnick, D. L., W. B. Owens, T. M. S. Johnston, K. B. Karnauskas, J. Jakoboski, and R. E. Todd (2020) The equatorial current system during the 2014-2016 El Niño as observed by underwater gliders, J. Phys. Oceanogr., in revision.

Jakoboski, J. K., R. E. Todd, W. B. Owens, K. B. Karnauskas, and D. L. Rudnick, 2020: Bifurcation and Upwelling of the Equatorial Undercurrent West of the Galápagos Archipelago. J. Phys. Oceanogr., 50, 887–905, doi: 10.1175/JPO-D-19-0110.1.
DOI: 10.7910/dvn/siweyd/3ywjyc
title: dpRelease-20200818-192638_countryConnections_centroids_routed_2004-2012_20200803-182020-Dataverse-1.RData

description: R Object that contains a privacy preserving release of semestral country-level Internet connectivity statistics from 2004 to 2012.
DOI: 10.7910/dvn/siweyd/csziuv
title: reproduce.R

description: R script that reproduces the results presented in the referred paper https://doi.org/10.7910/DVN/SIWEYD
DOI: 10.7910/dvn/siweyd/f5ozp8
title: dpRelease.R

description: R script that computes privacy preserving counts of sensitive data calling the Laplacian mechanism of the psilence library. By default the script runs the mechanism 100 times for the 15 values of Epsilon, as discussed in the paper.
DOI: 10.7910/dvn/siweyd/rurfl3
title: INSTRUCTIONS.txt

description: Text file that contains the instrucions to use the provided code and data to reproduce the statistical validation presented in the paper, to illustrate how to apply the Laplacian mechanism, including an example application using the Internet connectivity statistics, and to describe how to apply the same statistical validation to any new privacy preserving release of the Internet statistics. In addition to that, instructions are provided to install the psilence library that implements the Laplacian mechanism, and also to illustrate how to format sensitive dataset so our Laplacian mechanism can be applied to produce privacy-preserving estimates.
DOI: 10.5281/zenodo.3992346
title: On the use of real-time mortality data in modelling and analysis during an epidemic outbreak - underlying data

description: This project contains the primary data set analyzed in the paper "On the use of real-time mortality data in modelling and analysis during an epidemic outbreak ". The data was generated by downloading the <em>D<sup>T</sup></em>-series daily from the Public Health Agency of Sweden between 2020-04-02 and 2020-07-09. This project contains the following files: FHM_Covid_Download.zip. (Zip-archive of raw downloaded files with Swedish deaths data.) swedish_covid_deaths_data.csv. (Swedish deaths data collated from the raw data files in a .csv format.) swedish_covid_deaths_data.xlsx. (Swedish deaths data collated from the raw data files in a .xlsx format.) swedish_covid_deaths_OGR.R. (R-script to generate graphs and nowcasts in the paper.) MDAR author checklist.pdf (Completed MDAR reporting checklist)