cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25318/2710029301-fra
title: Facteur de motivation principal pour l'utilisation des technologies géomatique ou géospatiale, selon l'industrie et la taille de l'entreprise

description: Enquête sur les technologies de pointe, facteur de motivation principal pour l'utilisation des technologies géomatique ou géospatiale, selon le système de classification des industries de l'Amérique du Nord (SCIAN) et la taille de l'entreprise pour le Canada et certaines provinces, en 2014.
DOI: 10.25318/3610004401-eng
title: Balance of international payments, capital and financial account, annual

description: Annual data on the balance of payments, capital and financial account by category, by country or region.
DOI: 10.25318/3610004501-eng
title: Balance of international payments, current account, quarterly

description: Quarterly data on the balance of payments, current account by category, by country or region.
DOI: 10.25318/3610004501-fra
title: Balance des paiements internationaux, compte courant, trimestriel

description: Données trimestrielles de la balance des paiements, compte courant par catégorie, par pays ou région.
DOI: 10.25318/3610004601-fra
title: Balance des paiements internationaux, compte capital et financier, trimestriel

description: Données trimestrielles de la balance des paiements, compte financier et capital par catégorie, par pays ou région.
DOI: 10.25318/3610011001-fra
title: Exportations et importations de biens et services, trimestriel, Canada, (SCPAN 2007), inactif

description: Exportations et importations de biens et services trimestrielles en dollars enchaînés (2007), dollars courants et contributions à la variation en pourcentage.
DOI: 10.6084/m9.figshare.14168275
title: Additional file 2 of OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

description: Additional file 2: Table S2. Summary of K-mer analysis using genotypes of 217 wild Oryza accessions.
DOI: 10.6084/m9.figshare.14168269
title: Additional file 1 of OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

description: Additional file 1: Table S1. Accession list of OryzaGenome2.1.
DOI: 10.6084/m9.figshare.14168167
title: Additional file 2 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 2: Table S1. Sequencing metrics for single cell and population RNA-seq libraries.
DOI: 10.6084/m9.figshare.14168173
title: Additional file 3 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 3: Table S2. Number of cells after filtering out cells based on QC criteria.
DOI: 10.6084/m9.figshare.14168173.v1
title: Additional file 3 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 3: Table S2. Number of cells after filtering out cells based on QC criteria.
DOI: 10.6084/m9.figshare.14168269.v1
title: Additional file 1 of OryzaGenome2.1: Database of Diverse Genotypes in Wild Oryza Species

description: Additional file 1: Table S1. Accession list of OryzaGenome2.1.
DOI: 10.6084/m9.figshare.14168188
title: Additional file 5 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 5: Table S4. GO annotation pathways enriched for differentially variable genes in the 180Q HD isogenic system.
DOI: 10.6084/m9.figshare.14168188.v1
title: Additional file 5 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 5: Table S4. GO annotation pathways enriched for differentially variable genes in the 180Q HD isogenic system.
DOI: 10.6084/m9.figshare.14168509
title: Additional file 1 of Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancer

description: Additional file 1: Supplementary file 1: List of 2607 differentially expressed genes identified from microarray data analysis.
DOI: 10.6084/m9.figshare.14168182.v1
title: Additional file 4 of Pluripotent stem cell-derived models of neurological diseases reveal early transcriptional heterogeneity

description: Additional file 4: Table S3. Variability comparison of similarly expressed genes.
DOI: 10.6084/m9.figshare.14168206.v1
title: Additional file 2 of Genome-wide epistasis analysis for Alzheimer’s disease and implications for genetic risk prediction

description: Additional file 2: Table S1. Nominal significant SNP-SNP interactions (BOOST). Table S2. Nominal significant SNP-SNP interactions (Logistic regression). Table S3. Nominal significant SNP-SNP interactions (Joint effect). Table S4. Co-expression and eQTL analysis of significant genetic interactions (FDR &lt; 0.1). Table S5. Selected genetic interactions that showed non-random prediction in both ADNI and ROSMAP.
DOI: 10.6084/m9.figshare.14168560.v1
title: Additional file 3 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 3: Table S3 Annotation of differentially expressed genes in P. polymyxa SC2.
DOI: 10.6084/m9.figshare.14168644
title: Additional file 1 of Prognostic value of a novel glycolysis-related gene expression signature for gastrointestinal cancer in the Asian population

description: Additional file 1: Appendix S1. Basic information about the tumor samples we used in this study.
DOI: 10.6084/m9.figshare.14168518.v1
title: Additional file 3 of simATAC: a single-cell ATAC-seq simulation framework

description: Additional file 3 Table of statistical analysis parameters of simATAC library size modeling (provided in XLSX format).
DOI: 10.6084/m9.figshare.14168563
title: Additional file 4 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 4: Table S4 Annotation of differentially expressed genes in pepper.
DOI: 10.5281/zenodo.10510692
title: RafanoSet: Dataset of manually and automatically annotated Raphanus Raphanistrum weed images for object detection and segmentation in Heterogenous Agriculture Environment

description: This dataset is a collection of manually and automatically annotated multispectral Images over Raphanus Raphanistrum infestations among Wheat crops.

The collection of these MS images was done in field environment, at noon on 13 January 2022. The images were captured manually using the MicaSense RedEdge-M at 1m AGL manually over the crop rows containing a mix of Wheat crop and Horseradish weed. Annotated images were obtained using VIA annotator version 1.0.6. The dataset RafanoSet contains 5 sub-directories named ‘Automated Annotations’, ‘Binary Masks – Automated', ‘Binary Masks – Manual‘, ‘Manual Annotations’ and ‘Raw Images’. The sub-directory ‘Raw Images’ consists of 85 .png images. The sub-directory ‘Manual Annotations’ consists of 1 json file named ‘region_data’. The sub-directory ‘Binary Masks - Manual’ consists of 80 .jpg images representing manually segmented binary mask instances. The sub-directory ‘Binary Masks – Automated' consists of 80 .png images representing automatically segmented binary mask instances. The sub-directory ‘Automated Annotations’ consists of 80 .jpg files and 80 .xml files sharing the same names. One image scene, i.e. 5 images across different spectra were removed from ‘automated’ due to poor results. 

The scientific framework of image acquisition and annotations are explained in the Data in Brief paper. This is just a prerequisite to the data article.

Roles:

The image acquisition was performed by Mariano Crimaldi, a researcher, on behalf of Department of Agriculture and the hosting institution University of Naples Federico II, Italy.Shubham Rana has been the curator and analyst for the data under the supervision of his PhD supervisor Prof. Salvatore Gerbino. They are affiliated with Department of Engineering, University of Campania 'Luigi Vanvitelli'. We are also in the process of articulating a data-in-brief article associated with this repository

Domenico Barretta, Department of Engineering has been associated in consulting and brainstorming role particularly with data and annotation management and litmus testing of the datasets.
DOI: 10.5281/zenodo.10510693
title: RafanoSet: Dataset of manually and automatically annotated Raphanus Raphanistrum weed images for object detection and segmentation

description: This dataset is a collection of manually and automatically annotated multispectral Images over Raphanus Raphanistrum infestations among Wheat crops.The images are categorized in two directories namely 'Manual' and 'Auotmated'. The sub-directory 'Manual' consists of manually acquired 85 images in .PNG format and annotations in COCO segmentation format titled region_data.json. Whereas, the sub-directory 'Automated' consists of 80 automatically annotated images in .JPG format and 80 annotation files in .XML Pascal VOC format.

The scientific framework of image acquisition and annotations are explained in the Data in Brief paper. This is just a prerequisite to the data article.

Roles:

The image acquisition was performed by Mariano Crimaldi, a researcher, on behalf of Department of Agriculture and the hosting institution University of Naples Federico II, Italy.Shubham Rana has been the curator and analyst for the data under the supervision of his PhD supervisor Prof. Salvatore Gerbino. They are affiliated with Department of Engineering, University of Campania 'Luigi Vanvitelli'. We are also in the process of articulating a data-in-brief article associated with this repository

Domenico Barretta, Department of Engineering has been associated in consulting and brainstorming role particularly with data and annotation management and litmus testing of the datasets.
DOI: 10.5281/zenodo.10530405
title: RafanoSet: Dataset of manually and automatically annotated Raphanus Raphanistrum weed images for object detection and segmentation in Heterogenous Agriculture Environment

description: This dataset is a collection of manually and automatically annotated multispectral Images over Raphanus Raphanistrum infestations among Wheat crops.

The collection of these MS images was done in field environment, at noon on 13 January 2022. The images were captured manually using the MicaSense RedEdge-M at 1m AGL manually over the crop rows containing a mix of Wheat crop and Horseradish weed. Annotated images were obtained using VIA annotator version 1.0.6. The dataset RafanoSet contains 5 sub-directories named ‘Automated Annotations’, ‘Binary Masks – Automated', ‘Binary Masks – Manual‘, ‘Manual Annotations’ and ‘Raw Images’. The sub-directory ‘Raw Images’ consists of 85 .png images. The sub-directory ‘Manual Annotations’ consists of 1 json file named ‘region_data’. The sub-directory ‘Binary Masks - Manual’ consists of 80 .jpg images representing manually segmented binary mask instances. The sub-directory ‘Binary Masks – Automated' consists of 80 .png images representing automatically segmented binary mask instances. The sub-directory ‘Automated Annotations’ consists of 80 .jpg files and 80 .xml files sharing the same names. One image scene, i.e. 5 images across different spectra were removed from ‘automated’ due to poor results. 

The scientific framework of image acquisition and annotations are explained in the Data in Brief paper. This is just a prerequisite to the data article.

Roles:

The image acquisition was performed by Mariano Crimaldi, a researcher, on behalf of Department of Agriculture and the hosting institution University of Naples Federico II, Italy.Shubham Rana has been the curator and analyst for the data under the supervision of his PhD supervisor Prof. Salvatore Gerbino. They are affiliated with Department of Engineering, University of Campania 'Luigi Vanvitelli'. We are also in the process of articulating a data-in-brief article associated with this repository

Domenico Barretta, Department of Engineering has been associated in consulting and brainstorming role particularly with data and annotation management and litmus testing of the datasets.
DOI: 10.6084/m9.figshare.14168563.v1
title: Additional file 4 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 4: Table S4 Annotation of differentially expressed genes in pepper.
DOI: 10.6084/m9.figshare.21508693
title: Additional file 2 of Anthocyanin improves kidney function in diabetic kidney disease by regulating amino acid metabolism

description: Additional file 2: Table S1. The identified kidney proteins in CT, DKD, and ANT groups.
DOI: 10.6084/m9.figshare.14168644.v1
title: Additional file 1 of Prognostic value of a novel glycolysis-related gene expression signature for gastrointestinal cancer in the Asian population

description: Additional file 1: Appendix S1. Basic information about the tumor samples we used in this study.
DOI: 10.6084/m9.figshare.14168560
title: Additional file 3 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 3: Table S3 Annotation of differentially expressed genes in P. polymyxa SC2.
DOI: 10.5281/zenodo.10620084
title: THO5 subunit of the Arabidopsis TREX complex: role in mRNA export and heat tolerance

description: Characterisation of the Arabidopsis transcription-export (TREX) core complex THO by affinity purification combined with mass spectrometry (AP-MS) revealed that both THO5A and THO5B are components of the complex. Functional assays demonstrate a role in nucleocytosolic mRNA transport in plants.

 

Dataset S1: Quantitative mass spectrometry of affinity-purified THO5A and THO5B complexes using PEAKS

Dataset S2: Differential gene expression upon heat stress in Col-0 and differential transcript distribution of heat stress induced genes in tho5ab

Dataset S3: Functional annotation of heat stress induced transcriptional changes using Metascape
DOI: 10.6084/m9.figshare.14168581
title: Additional file 7 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 7: Table S5 Primers for RT-qPCR.
DOI: 10.6084/m9.figshare.13120741
title: Additional file 6 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 6: Table S2. Differential expression information and annotation of DEGs in the Venn analysis.
DOI: 10.6084/m9.figshare.13120735
title: Additional file 4 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 4: Table S1. Summary statistics of clean reads in the transcriptomes of Chrysanthemum vestitum.
DOI: 10.6084/m9.figshare.14168581.v1
title: Additional file 7 of Interactional mechanisms of Paenibacillus polymyxa SC2 and pepper (Capsicum annuum L.) suggested by transcriptomics

description: Additional file 7: Table S5 Primers for RT-qPCR.
DOI: 10.6084/m9.figshare.13120657
title: Additional file 2 of Haematological and serum biochemical reference values in Chinese water deer (Hydropotes inermis): a preliminary study

description: Additional file 2. The parameter values of other animals from literatures in the discussion.
DOI: 10.6084/m9.figshare.13120735.v1
title: Additional file 4 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 4: Table S1. Summary statistics of clean reads in the transcriptomes of Chrysanthemum vestitum.
DOI: 10.6084/m9.figshare.13120720.v1
title: Additional file 11 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 11: Table S5. Primer sequences used in RT-PCR experiments.
DOI: 10.6084/m9.figshare.13120723
title: Additional file 12 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 12: Table S6. Primer sequences used in qRT-PCR experiments.
DOI: 10.6084/m9.figshare.13120723.v1
title: Additional file 12 of Comprehensive transcriptomic analysis provides new insights into the mechanism of ray floret morphogenesis in chrysanthemum

description: Additional file 12: Table S6. Primer sequences used in qRT-PCR experiments.
DOI: 10.5517/ccdc.csd.cc29z5wc
title: CCDC 2144173: Experimental Crystal Structure Determination

description: Related Article: Hayfa Mkacher, Fadia Ben Taheur, Nesrine Amiri, Albandary Almahri, Frédérique Loiseau, Florian Molton, Emiliano Martinez Vollbert, Thierry Roisnel, Ilona Turowska-Tyrk, Habib Nasri|2022|Inorg.Chim.Acta|545|121278|doi:10.1016/j.ica.2022.121278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bpfwc
title: CCDC 2165563: Experimental Crystal Structure Determination

description: Related Article: Hayfa Mkacher, Fadia Ben Taheur, Nesrine Amiri, Albandary Almahri, Frédérique Loiseau, Florian Molton, Emiliano Martinez Vollbert, Thierry Roisnel, Ilona Turowska-Tyrk, Habib Nasri|2022|Inorg.Chim.Acta|545|121278|doi:10.1016/j.ica.2022.121278
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.13120620
title: Additional file 4 of High throughput single-cell detection of multiplex CRISPR-edited gene modifications

description: Table S3. Sequences of primers used for sgRNA amplification by Fluidigm Biomark. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.13120654
title: Additional file 1 of Haematological and serum biochemical reference values in Chinese water deer (Hydropotes inermis): a preliminary study

description: Additional file 1. Detail information of measured parameters for the Chinese water deer.
DOI: 10.6084/m9.figshare.13120654.v1
title: Additional file 1 of Haematological and serum biochemical reference values in Chinese water deer (Hydropotes inermis): a preliminary study

description: Additional file 1. Detail information of measured parameters for the Chinese water deer.
DOI: 10.6084/m9.figshare.12072309
title: Additional file 2 of The landscape of alternative splicing in HIV-1 infected CD4 T-cells

description: Additional file 2: Table S1. List of AS exons in the infected T-cells.
DOI: 10.6084/m9.figshare.12072318.v1
title: Additional file 4 of The landscape of alternative splicing in HIV-1 infected CD4 T-cells

description: Additional file 4: Table S3. List of AS genes in the enriched GO terms.
DOI: 10.5061/dryad.n94sg/1
title: DWYER_AFLP_Data_for_Dryad

description: This file contains AFLP presence/absence data for the individual insects included in this study. Each individual has a unique identification number and is designated to a number between 1 and 11 according to phenotypic species identification and collection region. Details are included in the key/legend contained within the Excel file.
DOI: 10.5061/dryad.p460c/1
title: PONE-D-15-00619R1_FTC
DOI: 10.5061/dryad.q1gb0/1
title: Capture histories used to model pair fidelity and survival in E_surge

description: Data include capture histories (column 'H:') for a) female blue and great tits of Wytham woods; b) male blue and great tits of Wytham woods; c) female great tits of Wytham and Bagley woods; d) male great tits of Wytham and Bagley woods. For each dataset, the capture history is followed by the column 'S:' (denotes number of individuals with the capture history), the column '$COV:Mgp' (covariate coding for age, either Juvenile or Adult), and the column '$COV:Sp; or ;$COV:Pop; (coding for Species: G - great tit, B -Blue tit; or population Bag - Bagley wood, Wyth =  Wytham woods). These capture histories were used to model pair fidelity and survival in program E_Surge as described in the Supplementary material of the Culina et al. 2015. Capture histories consist of 6 different codes that describe the 'event' that happen for a particular bird in a particular season. The original data on breeding pairs come from the long-term monitored populations in these woods.
DOI: 10.5061/dryad.r24b1/1
title: 16S rRNA amplicon sequencing - QIIME analysis

description: This archive file contains all input and output files required for and produced by the QIIME pipeline in the 'dataset' folder. The quality file Wound.qual and the sequence file Wound.fna along with the mapping files Map.txt and Map_corrected2.txt are the primary input files. Output files include the complete selection of OTU tables (otu_table.biom, Normalised_otu_table.biom as well the weighted and unweighted Unifrac tables). Additional special files required for analysis can be found in the 'input' folder. The script 'QIIME Analysis script.txt' was used for data analysis and the file 'Sample names.txt' should be used to determine the biological sample / treatment corresponding to each sample. Sequences have been deposited in the NCBI Sequence Read Archive (SRA) database under study accession number SRP052969.
DOI: 10.5061/dryad.r24b1/3
title: Immune parameter data

description: This archive file contains the data files for the expression levels of the range of immune parameters presented in the manuscript: 1) Chromoprotein expression levels, 2) Fluorescent protein expression levels, 3) Immune gene expression levels and 4) PO and tpPO activity levels. Each file contains a description of the samples and sample names used.
DOI: 10.5061/dryad.15rk0/1
title: rpba_trim_noogmiss_200loci

description: SNAPP input file for species delimitation analyses based on 200 loci
DOI: 10.5061/dryad.15rk0/2
title: rpba_trim_nomiss_35loci

description: SNAPP input file for species delimitation analyses based on 35 loci with no missing data
DOI: 10.5061/dryad.15rk0/4
title: redpoll_wOG_1587SNPs

description: Genepop formatted file for 1587 SNPs for redpolls and two outgroup (Loxia) individuals. SNPs were assembled using the stacks pipeline.
DOI: 10.5061/dryad.15rk0/5
title: RedpollFilteredStructureTranscriptome

description: Structure file generated by calling SNPs from the de novo transcriptome presented in Mason and Taylor using the GATK
DOI: 10.5061/dryad.50kt0/1
title: File nymphs_replica 1.raw.zip

description: This file contains the mass spectrometry data of iTRAQ labeled nymph sample (A. phagocytophilum-infected and uninfected control) replicate 1 (RAW.ZIP). Files may be viewed with Thermo Scientific Qual Browser.
DOI: 10.5061/dryad.50kt0/2
title: File nymphs_replica 2.raw.zip

description: This file contains the mass spectrometry data of iTRAQ labeled nymph sample (A. phagocytophilum-infected and uninfected control) replicate 2 (RAW.ZIP). Files may be viewed with Thermo Scientific Qual Browser.
DOI: 10.5061/dryad.50kt0/3
title: File tissues_ replica 1.raw.zip

description: This file contains the mass spectrometry data of iTRAQ labeled adult female gut and salivary gland sample (A. phagocytophilum-infected and uninfected control) replicate 1 (RAW.ZIP). Files may be viewed with Thermo Scientific Qual Browser.
DOI: 10.5061/dryad.50kt0/4
title: File tissues_ replica 2.raw.zip

description: This file contains the mass spectrometry data of iTRAQ labeled adult female gut and salivary gland sample (A. phagocytophilum-infected and uninfected control) replicate 2 (RAW.ZIP). Files may be viewed with Thermo Scientific Qual Browser.