cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11473902.v2
title: MOESM12 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 12 Hi-C TADs and A/B compartments: the archive contains three folders, one for each species (capra_hircus, gallus_gallus, sus_scrofa). Each folder contains the following two files:• compartments.bed• mat.40000.longest25chr.tad.consensus.bed
DOI: 10.6084/m9.figshare.11473902.v1
title: MOESM12 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 12 Hi-C TADs and A/B compartments: the archive contains three folders, one for each species (capra_hircus, gallus_gallus, sus_scrofa). Each folder contains the following two files: • compartments.bed • mat.40000.longest25chr.tad.consensus.bed
DOI: 10.6084/m9.figshare.11473914
title: MOESM13 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 13 Three livestock species TAD boundary orthology.
DOI: 10.6084/m9.figshare.11473914.v2
title: MOESM13 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 13 Three livestock species TAD boundary orthology.
DOI: 10.6084/m9.figshare.11473914.v1
title: MOESM13 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 13 Three livestock species TAD boundary orthology.
DOI: 10.15131/shef.data.21407121
title: CBTS-ED ratings for "Assessing clinician competence in the delivery of cognitive-behavioural therapy for eating disorders: development of the Cognitive-Behavioural Therapy Scale for Eating Disorders (CBTS-ED)"

description:   
This study was reviewed and approved by the University of Sheffield Ethics Committee (039900). 
<br>
Dataset for the CBTS-ED ratings from expert raters (experienced therapists working in the field of eating disorders) and non-expert raters (less experienced in the field of eating disorders, e.g., trainee therapists). 
<br>
Part A CBTS-ED items (10 items) should be rated every time. However, in the case of error in completion, up to two items can be missing and the scale can still be scored, using pro-rating to yield an overall item mean score. Part B items (16 items) are rated only when relevant to the session being observed. The overall score for Part B is the item mean score for the number of items identified as relevant and scored.
<br>
Six mock CBT-ED sessions ("vignettes") were observed and rated by the raters. One expert rater also took part in the filming of the mock CBT-ED sessions, thus did not rate their own tapes (vignette 3 and 4). Missing data here is represented with /. 
<br>
Data used to assess Internal Consistency (Alpha) of Part A of the CBTS-ED, and assess inter-rater reliability (ICC) for total Part A mean scores, total Part B mean scores, and individual Part A item scores. 
<br>
DOI: 10.15131/shef.data.21407121.v2
title: CBTS-ED ratings for "Assessing clinician competence in the delivery of cognitive-behavioural therapy for eating disorders: development of the Cognitive-Behavioural Therapy Scale for Eating Disorders (CBTS-ED)"

description:   
This study was reviewed and approved by the University of Sheffield Ethics Committee (039900). 
<br>
Dataset for the CBTS-ED ratings from expert raters (experienced therapists working in the field of eating disorders) and non-expert raters (less experienced in the field of eating disorders, e.g., trainee therapists). 
<br>
Part A CBTS-ED items (10 items) should be rated every time. However, in the case of error in completion, up to two items can be missing and the scale can still be scored, using pro-rating to yield an overall item mean score. Part B items (16 items) are rated only when relevant to the session being observed. The overall score for Part B is the item mean score for the number of items identified as relevant and scored.
<br>
Six mock CBT-ED sessions ("vignettes") were observed and rated by the raters. One expert rater also took part in the filming of the mock CBT-ED sessions, thus did not rate their own tapes (vignette 3 and 4). Missing data here is represented with /. 
<br>
Data used to assess Internal Consistency (Alpha) of Part A of the CBTS-ED, and assess inter-rater reliability (ICC) for total Part A mean scores, total Part B mean scores, and individual Part A item scores. 
<br>
DOI: 10.6084/m9.figshare.21435392
title: Additional file 1 of Expression of long noncoding RNAs in the ovarian granulosa cells of women with diminished ovarian reserve using high-throughput sequencing

description: Additional file 1 Supplemental Table 1 Alignment of the sequencing reads to the reference genome. Supplemental Table 2 Statistical analyses of lncRNAs in each sample. Supplemental Table 3 Statistical analyses of the DE lncRNAs. Supplemental Table 4 Statistical analyses of the DE lncRNA cis-regulated target genes. Supplemental Table 5 GO terms enriched for the DE mRNA genes. Supplemental Table 6 The lncRNA–mRNA coexpression pairs. Supplemental Table 7 Specific primer sequences of the validated mRNAs and lncRNAs.
DOI: 10.6084/m9.figshare.21435392.v1
title: Additional file 1 of Expression of long noncoding RNAs in the ovarian granulosa cells of women with diminished ovarian reserve using high-throughput sequencing

description: Additional file 1 Supplemental Table 1 Alignment of the sequencing reads to the reference genome. Supplemental Table 2 Statistical analyses of lncRNAs in each sample. Supplemental Table 3 Statistical analyses of the DE lncRNAs. Supplemental Table 4 Statistical analyses of the DE lncRNA cis-regulated target genes. Supplemental Table 5 GO terms enriched for the DE mRNA genes. Supplemental Table 6 The lncRNA–mRNA coexpression pairs. Supplemental Table 7 Specific primer sequences of the validated mRNAs and lncRNAs.
DOI: 10.6084/m9.figshare.25308565
title: Global dataset of drainage basin shapes

description: Shape files of global hexagons analyzed based on level-12 basins from HydroBASINS dataset, including ID (GRID_ID), width-to-length ratio (WLR), roughness in degree (Roughness), whole-basin slope in degree (Sb), detrended roughness in degree (DetrendRou), relative roughness (Rrel) and x, y coordinates of centroid.
DOI: 10.6084/m9.figshare.25308565.v1
title: Global dataset of drainage basin shapes

description: Shape files of global hexagons analyzed based on level-12 basins from HydroBASINS dataset, including ID (GRID_ID), width-to-length ratio (WLR), roughness in degree (Roughness), whole-basin slope in degree (Sb), detrended roughness in degree (DetrendRou), relative roughness (Rrel) and x, y coordinates of centroid.
DOI: 10.6084/m9.figshare.11473947
title: MOESM4 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 4 Reference DE genes (all combinations): the archive contains four folders, one for each species (bos_taurus, capra_hircus, gallus_gallus, sus_scrofa). Each folder contains itself two subfolders, one for each model: diffcounts.nominsum (Model 1) and diffcounts.cdvsliver (Model 2). Results of Model 1 are given in:• refgenes.counts.min2tpm0.1.normcounts.diff.readme.idx• refgenes.counts.min2tpm0.1.normcounts.diff.cd4.cd8.bed• refgenes.counts.min2tpm0.1.normcounts.diff.cd4.liver.bed• refgenes.counts.min2tpm0.1.normcounts.diff.cd8.liver.bedResults of Model 2 are given in:• refgenes.counts.min2tpm0.1.normcounts.diff.readme.idxrefgenes.counts.min2tpm0.1.normcounts.diff.cd.liver.bed All bed files contain the coordinates and id of the genes found to be differentially expressed between the two conditions. The file also contains the normalized read counts of those genes in the different samples as well as the adjusted pvalue, logFC and normLogFC (see readme.idx file for more details).
DOI: 10.6084/m9.figshare.11473947.v2
title: MOESM4 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 4 Reference DE genes (all combinations): the archive contains four folders, one for each species (bos_taurus, capra_hircus, gallus_gallus, sus_scrofa). Each folder contains itself two subfolders, one for each model: diffcounts.nominsum (Model 1) and diffcounts.cdvsliver (Model 2). Results of Model 1 are given in:• refgenes.counts.min2tpm0.1.normcounts.diff.readme.idx• refgenes.counts.min2tpm0.1.normcounts.diff.cd4.cd8.bed• refgenes.counts.min2tpm0.1.normcounts.diff.cd4.liver.bed• refgenes.counts.min2tpm0.1.normcounts.diff.cd8.liver.bedResults of Model 2 are given in:• refgenes.counts.min2tpm0.1.normcounts.diff.readme.idxrefgenes.counts.min2tpm0.1.normcounts.diff.cd.liver.bed All bed files contain the coordinates and id of the genes found to be differentially expressed between the two conditions. The file also contains the normalized read counts of those genes in the different samples as well as the adjusted pvalue, logFC and normLogFC (see readme.idx file for more details).
DOI: 10.6084/m9.figshare.11473947.v1
title: MOESM4 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 4 Reference DE genes (all combinations): the archive contains four folders, one for each species (bos_taurus, capra_hircus, gallus_gallus, sus_scrofa). Each folder contains itself two subfolders, one for each model: diffcounts.nominsum (Model 1) and diffcounts.cdvsliver (Model 2). Results of Model 1 are given in: • refgenes.counts.min2tpm0.1.normcounts.diff.readme.idx • refgenes.counts.min2tpm0.1.normcounts.diff.cd4.cd8.bed • refgenes.counts.min2tpm0.1.normcounts.diff.cd4.liver.bed • refgenes.counts.min2tpm0.1.normcounts.diff.cd8.liver.bed Results of Model 2 are given in: • refgenes.counts.min2tpm0.1.normcounts.diff.readme.idx refgenes.counts.min2tpm0.1.normcounts.diff.cd.liver.bed All bed files contain the coordinates and id of the genes found to be differentially expressed between the two conditions. The file also contains the normalized read counts of those genes in the different samples as well as the adjusted pvalue, logFC and normLogFC (see readme.idx file for more details).
DOI: 10.6084/m9.figshare.11473956
title: MOESM5 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 5 FR-AgENCODE genes and transcripts (structure, expression, positional and coding classes).• bos_taurus_cuff_tpm0.1_2sample_complete.gff• bos_taurus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• bos_taurus.frag.gnid.posclasslist.codclasslist.tsv• bos_taurus.fraggn.tpm.tsv• capra_hircus_cuff_tpm0.1_2sample_complete.gff• capra_hircus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• capra_hircus.frag.gnid.posclasslist.codclasslist.tsv• capra_hircus.fraggn.tpm.tsv• gallus_gallus_cuff_tpm0.1_2sample_complete.gff• gallus_gallus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• gallus_gallus.frag.gnid.posclasslist.codclasslist.tsv• gallus_gallus.fraggn.tpm.tsv• sus_scrofa_cuff_tpm0.1_2sample_complete.gff• sus_scrofa_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• sus_scrofa.frag.gnid.posclasslist.codclasslist.tsv• sus_scrofa.fraggn.tpm.tsv
DOI: 10.15131/shef.data.21357762.v1
title: Within and between-day variation and associations of symptoms in Long Covid: intensive longitudinal study

description: Data from long covid study: revision currently under review at PLOS ONE . 
Comprises data in 3hrly epochs over 14 days from 74 individuals
Data includes summary measures from wrist accelerometer and raw data from the smartphone app used to collect symptom data.
DOI: 10.6084/m9.figshare.11473956.v2
title: MOESM5 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 5 FR-AgENCODE genes and transcripts (structure, expression, positional and coding classes).• bos_taurus_cuff_tpm0.1_2sample_complete.gff• bos_taurus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• bos_taurus.frag.gnid.posclasslist.codclasslist.tsv• bos_taurus.fraggn.tpm.tsv• capra_hircus_cuff_tpm0.1_2sample_complete.gff• capra_hircus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• capra_hircus.frag.gnid.posclasslist.codclasslist.tsv• capra_hircus.fraggn.tpm.tsv• gallus_gallus_cuff_tpm0.1_2sample_complete.gff• gallus_gallus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• gallus_gallus.frag.gnid.posclasslist.codclasslist.tsv• gallus_gallus.fraggn.tpm.tsv• sus_scrofa_cuff_tpm0.1_2sample_complete.gff• sus_scrofa_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv• sus_scrofa.frag.gnid.posclasslist.codclasslist.tsv• sus_scrofa.fraggn.tpm.tsv
DOI: 10.6084/m9.figshare.11473956.v1
title: MOESM5 of Multi-species annotation of transcriptome and chromatin structure in domesticated animals

description: Additional file 5 FR-AgENCODE genes and transcripts (structure, expression, positional and coding classes). • bos_taurus_cuff_tpm0.1_2sample_complete.gff • bos_taurus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv • bos_taurus.frag.gnid.posclasslist.codclasslist.tsv • bos_taurus.fraggn.tpm.tsv • capra_hircus_cuff_tpm0.1_2sample_complete.gff • capra_hircus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv • capra_hircus.frag.gnid.posclasslist.codclasslist.tsv • capra_hircus.fraggn.tpm.tsv • gallus_gallus_cuff_tpm0.1_2sample_complete.gff • gallus_gallus_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv • gallus_gallus.frag.gnid.posclasslist.codclasslist.tsv • gallus_gallus.fraggn.tpm.tsv • sus_scrofa_cuff_tpm0.1_2sample_complete.gff • sus_scrofa_cuff_tpm0.1_2sample_trid_4posclasses_3codingclasses_booleans.tsv • sus_scrofa.frag.gnid.posclasslist.codclasslist.tsv • sus_scrofa.fraggn.tpm.tsv
DOI: 10.6084/m9.figshare.21435411
title: Additional file 12 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 12: Table S1. DEGs identified for non-m6A-related NAS model construction.
DOI: 10.6084/m9.figshare.21435411.v1
title: Additional file 12 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 12: Table S1. DEGs identified for non-m6A-related NAS model construction.
DOI: 10.6084/m9.figshare.19862477
title: Additional file 4 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 4: Table S3. Function classification by Clusters of Orthologous Groups (COG) of lactylated proteins in T. gondii.
DOI: 10.6084/m9.figshare.19862471.v1
title: Additional file 2 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 2: Table S1. Identified lactylated proteins and the Kla sites in T. gondii.
DOI: 10.6084/m9.figshare.21435423
title: Additional file 16 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 16: Table S5. The correlations between non-m6A or m6A regulators and related-lncRNAs.
DOI: 10.6084/m9.figshare.19862483
title: Additional file 6 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 6: Table S5. Subcellular distribution of the lactylated proteins in T. gondii.
DOI: 10.6084/m9.figshare.19862477.v1
title: Additional file 4 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 4: Table S3. Function classification by Clusters of Orthologous Groups (COG) of lactylated proteins in T. gondii.
DOI: 10.6084/m9.figshare.19862474
title: Additional file 3 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 3: Table S2. List of peptides matches the enriched motif in T. gondii.
DOI: 10.6084/m9.figshare.21435414
title: Additional file 13 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 13: Table S2. DEGs identified for m6A-related NAS model construction.
DOI: 10.6084/m9.figshare.21435414.v1
title: Additional file 13 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 13: Table S2. DEGs identified for m6A-related NAS model construction.
DOI: 10.6084/m9.figshare.21435417
title: Additional file 14 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 14: Table S3. Primer sequences used for qRT-PCR.
DOI: 10.6084/m9.figshare.21435417.v1
title: Additional file 14 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 14: Table S3. Primer sequences used for qRT-PCR.
DOI: 10.6084/m9.figshare.21435426.v1
title: Additional file 17 of Scoring model based on the signature of non-m6A-related neoantigen-coding lncRNAs assists in immune microenvironment analysis and TCR-neoantigen pair selection in gliomas

description: Additional file 17: Table S6. DEGs identified for non-m6A-related NAS model construction in scSeq data.
DOI: 10.6084/m9.figshare.19862474.v1
title: Additional file 3 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 3: Table S2. List of peptides matches the enriched motif in T. gondii.
DOI: 10.6084/m9.figshare.19862480
title: Additional file 5 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 5: Table S4. KEGG pathway enrichment in T. gondii.
DOI: 10.6084/m9.figshare.19862483.v1
title: Additional file 6 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 6: Table S5. Subcellular distribution of the lactylated proteins in T. gondii.
DOI: 10.6084/m9.figshare.19862486.v1
title: Additional file 7 of Systematic identification of the lysine lactylation in the protozoan parasite Toxoplasma gondii

description: Additional file 7: Table S6. PPI network of Kla in T. gondii.
DOI: 10.15468/dl.319oae
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((60.46875 14.0625,121.28906 14.0625,121.28906 52.73438,60.46875 52.73438,60.46875 14.0625))",
 "TaxonKey is Lonicera heterophylla Decne."
 ]
}

 The dataset includes 120 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002243-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57541
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.69kz2z
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Solidago canadensis L."
 ]
}

 The dataset includes 109 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051520-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e23c5
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Darevskia dahli (Darevsky, 1957)"
 ]
}

 The dataset includes 416 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005903-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m62qse
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ameiva parecis (Colli, Costa, Garda, Kopp, Mesquita, Péres, Valdujo, Vieira & Wiederhecker, 2003))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051533-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wj7npb
title: Occurrence Download

description: A dataset containing 317 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-100.995 21.884,-100.907 21.884,-100.907 21.972,-100.995 21.972,-100.995 21.884))"
 ]
}

 The dataset includes 317 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037463-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57334
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.