cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1183687.10fu
title: SH1183687.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1183688.10fu
title: SH1183688.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.28003444.v1
title: The FLuorometholone as Adjunctive MEdical Therapy for Trachomatous Trichiasis Surgery (FLAME) Trial: Study Design

description: To report the design of FLuorometholone as Adjunctive MEdical therapy for TT surgery (FLAME) trial. Parallel design, double-masked, placebo-controlled clinical trial with 1:1 randomization to fluorometholone 0.1% eye drops twice daily or placebo twice daily for 4 weeks in eyes undergoing trachomatous trichiasis (TT) surgery for assessing the efficacy, safety, and cost-effectiveness of fluorometholone 0.1% in preventing recurrent postoperative trichiasis (PTT). Up to 2500 eligible persons with trachomatous trichiasis undergoing lid rotation surgery were enrolled in the Jimma zone, Ethiopia. Participants, surgeons, study field staff, and study supervisors leading operational aspects of the trial are masked to treatment assignment. Randomization is stratified by the surgeon and is simultaneously stratified by the district. Study visits (in addition to programmatic follow-ups) are at the baseline/enrollment, at four-week post-enrollment, and after 6 months and 1 year. The primary outcome is cumulative one-year PTT incidence, defined as: ≥1 lashes touching the globe, evidence of epilation, and/or repeat TT surgery. Secondary postoperative outcomes include the number of trichiatic lashes, location (touching the cornea or not), evidence of post-operative epilation, entropion, changes in corneal opacity, IOP elevation, need for cataract surgery, visual acuity change from the baseline, eyelid contour abnormality, granuloma, eyelid closure defect, and the occurrence of adverse events. Health economic analyses center on calculating the incremental cost per case of PTT avoided by fluorometholone treatment. The FLAME Trial is designed to provide evidence of the efficacy, safety, and cost-effectiveness of adjunctive topical peri-/postoperative fluorometholone 0.1% therapy with trichiasis surgery, which is hypothesized to reduce the risk of recurrent trichiasis while being acceptably safe. https://www.clinicaltrials.gov/study/NCT04149210.
DOI: 10.6084/m9.figshare.24694449
title: Prevalence of Trachoma After Three Rounds of Antibiotic Mass Drug Administration in 13 Woredas of Gambella Region, Ethiopia

description: Following baseline surveys in 2013 and 2014, trachoma elimination interventions, including three rounds of azithromycin mass drug administration (MDA), were implemented in 13 woredas (administrative districts) of Gambella Regional State, Ethiopia. We conducted impact surveys to determine if elimination thresholds have been met or if additional interventions are required. Cross-sectional population-based surveys were conducted in 13 woredas of Gambella Regional State, combined into five evaluation units (EUs), 6─12 months after their last MDA round. A two-stage systematic (first stage) and random (second stage) sampling technique was used. WHO-recommended protocols were implemented with the support of Tropical Data. Household water, sanitation and hygiene (WASH) access was assessed. The age-adjusted prevalence of trachomatous inflammation – follicular (TF) in 1–9-year-olds in the five EUs ranged from 0.3–19.2%, representing a general decline in TF prevalence compared to baseline estimates. The age- and gender-adjusted prevalence of trachomatous trichiasis (TT) unknown to the health system in those aged ≥ 15 years ranged from 0.47–3.08%. Of households surveyed, 44% had access to an improved drinking water source within a 30-minute return journey of the house, but only 3% had access to an improved latrine. In two EUs, no further MDA should be delivered, and a surveillance survey should be conducted after two years without MDA. In one EU, one further round of MDA should be conducted followed by another impact survey. In two EUs, three further MDA rounds are required. Surgery, facial cleanliness and environmental improvement interventions are needed throughout the region.
DOI: 10.6084/m9.figshare.24694449.v1
title: Prevalence of Trachoma After Three Rounds of Antibiotic Mass Drug Administration in 13 Woredas of Gambella Region, Ethiopia

description: Following baseline surveys in 2013 and 2014, trachoma elimination interventions, including three rounds of azithromycin mass drug administration (MDA), were implemented in 13 woredas (administrative districts) of Gambella Regional State, Ethiopia. We conducted impact surveys to determine if elimination thresholds have been met or if additional interventions are required. Cross-sectional population-based surveys were conducted in 13 woredas of Gambella Regional State, combined into five evaluation units (EUs), 6─12 months after their last MDA round. A two-stage systematic (first stage) and random (second stage) sampling technique was used. WHO-recommended protocols were implemented with the support of Tropical Data. Household water, sanitation and hygiene (WASH) access was assessed. The age-adjusted prevalence of trachomatous inflammation – follicular (TF) in 1–9-year-olds in the five EUs ranged from 0.3–19.2%, representing a general decline in TF prevalence compared to baseline estimates. The age- and gender-adjusted prevalence of trachomatous trichiasis (TT) unknown to the health system in those aged ≥ 15 years ranged from 0.47–3.08%. Of households surveyed, 44% had access to an improved drinking water source within a 30-minute return journey of the house, but only 3% had access to an improved latrine. In two EUs, no further MDA should be delivered, and a surveillance survey should be conducted after two years without MDA. In one EU, one further round of MDA should be conducted followed by another impact survey. In two EUs, three further MDA rounds are required. Surgery, facial cleanliness and environmental improvement interventions are needed throughout the region.
DOI: 10.6084/m9.figshare.28003444
title: The FLuorometholone as Adjunctive MEdical Therapy for Trachomatous Trichiasis Surgery (FLAME) Trial: Study Design

description: To report the design of FLuorometholone as Adjunctive MEdical therapy for TT surgery (FLAME) trial. Parallel design, double-masked, placebo-controlled clinical trial with 1:1 randomization to fluorometholone 0.1% eye drops twice daily or placebo twice daily for 4 weeks in eyes undergoing trachomatous trichiasis (TT) surgery for assessing the efficacy, safety, and cost-effectiveness of fluorometholone 0.1% in preventing recurrent postoperative trichiasis (PTT). Up to 2500 eligible persons with trachomatous trichiasis undergoing lid rotation surgery were enrolled in the Jimma zone, Ethiopia. Participants, surgeons, study field staff, and study supervisors leading operational aspects of the trial are masked to treatment assignment. Randomization is stratified by the surgeon and is simultaneously stratified by the district. Study visits (in addition to programmatic follow-ups) are at the baseline/enrollment, at four-week post-enrollment, and after 6 months and 1 year. The primary outcome is cumulative one-year PTT incidence, defined as: ≥1 lashes touching the globe, evidence of epilation, and/or repeat TT surgery. Secondary postoperative outcomes include the number of trichiatic lashes, location (touching the cornea or not), evidence of post-operative epilation, entropion, changes in corneal opacity, IOP elevation, need for cataract surgery, visual acuity change from the baseline, eyelid contour abnormality, granuloma, eyelid closure defect, and the occurrence of adverse events. Health economic analyses center on calculating the incremental cost per case of PTT avoided by fluorometholone treatment. The FLAME Trial is designed to provide evidence of the efficacy, safety, and cost-effectiveness of adjunctive topical peri-/postoperative fluorometholone 0.1% therapy with trichiasis surgery, which is hypothesized to reduce the risk of recurrent trichiasis while being acceptably safe. https://www.clinicaltrials.gov/study/NCT04149210.
DOI: 10.6084/m9.figshare.23723633
title: The Association Between the Severity of Trachomatous Scarring and Trachomatous Trichiasis Severity in Surgical Patients in Tanzania

description: To determine the association between the severity of trachomatous conjunctival scarring (TS) of the upper eyelid conjunctiva and trachomatous trichiasis (TT) severity in TT surgical patients. A cross-sectional study was conducted amongst adults with TT who were referred to surgical camps in Bahi District, Tanzania, for TT surgery. Participants underwent ocular examination. The presence and severity of TS was evaluated in photographs of the everted upper eyelid. TT severity was assessed at the time of the ocular exam based on the number of lashes touching the globe and/or evidence and extent of epilation. Ordinal logistic models were used to examine the association between the severity of TS and TT severity. A total of 627 eyes of 388 participants were included. Mean age was 65 years (ranging from 21–98), 81% were females, and 62% had bilateral TT. 93% of eyes with any TT had at least moderate TS; 62% of eyes had severe TS. An increase in TS severity was associated with an increase in the severity of TT. Using as a reference eyes with none to mild TS, in eyes with moderate TS the odds of increased severity of TT was 1.30 (95% CI 0.67–2.51), in eyes with severe TS the odds was 4.20 (95% CI 2.23–7.92). In cases of trachomatous trichiasis presenting for surgery, the severity of TT was significantly associated with the severity of TS with almost all cases of TT having moderate or severe scarring.
DOI: 10.6084/m9.figshare.23723633.v1
title: The Association Between the Severity of Trachomatous Scarring and Trachomatous Trichiasis Severity in Surgical Patients in Tanzania

description: To determine the association between the severity of trachomatous conjunctival scarring (TS) of the upper eyelid conjunctiva and trachomatous trichiasis (TT) severity in TT surgical patients. A cross-sectional study was conducted amongst adults with TT who were referred to surgical camps in Bahi District, Tanzania, for TT surgery. Participants underwent ocular examination. The presence and severity of TS was evaluated in photographs of the everted upper eyelid. TT severity was assessed at the time of the ocular exam based on the number of lashes touching the globe and/or evidence and extent of epilation. Ordinal logistic models were used to examine the association between the severity of TS and TT severity. A total of 627 eyes of 388 participants were included. Mean age was 65 years (ranging from 21–98), 81% were females, and 62% had bilateral TT. 93% of eyes with any TT had at least moderate TS; 62% of eyes had severe TS. An increase in TS severity was associated with an increase in the severity of TT. Using as a reference eyes with none to mild TS, in eyes with moderate TS the odds of increased severity of TT was 1.30 (95% CI 0.67–2.51), in eyes with severe TS the odds was 4.20 (95% CI 2.23–7.92). In cases of trachomatous trichiasis presenting for surgery, the severity of TT was significantly associated with the severity of TS with almost all cases of TT having moderate or severe scarring.
DOI: 10.5066/p13xbxkv
title: Satellite images used to test a sundial method for inferring image acquisition time from shadow orientation

description: This data release provides satellite images used to test a method for inferring image acquisition time from shadow orientation. For many applications, such as linking remotely sensed data to streamflow recorded at a gaging station, knowing the time an image is acquired is important, but such metadata often is not available. The sundial method is a simple means of inferring image acquisition time from shadow orientation. Images with known acquisition times are used to test the approach.
The file SundialDataRelease.csv contains image metadata, shadow measurements, and inferred image acquisition times based on the sundial method. The difference between the known acquisition times of the satellite images and those inferred via the sundial technique is used to assess the accuracy of the method. Please refer to the entity and attribute section of the metadata for further detail regarding this file.
The file SundialImages.zip contains 16 WorldView satellite images with known acquisition times that were used to test the sundial method. Each image is provided in a GeoTIFF format that includes embedded spatial referencing information.
This project is a collaboration between the University of Idaho Center for Ecohydraulics Research and the USGS supported by the USGS Next Generation Water Observing System External Research and Development Program.

Users are advised to thoroughly read the metadata file associated with this data release to understand the appropriate use and limitations of the data and code provided herein.

Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Although this information product, for the most part, is in the public domain, it also may contain copyrighted materials as noted in the text. Permission to reproduce copyrighted items must be secured from the copyright owner. MAXAR retains the copyright on all the images: "© 2024 MAXAR".
DOI: 10.15468/dl.b5ktf5
title: Occurrence Download

description: A dataset containing 659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Quercus canariensis Willd."
 ]
}

 The dataset includes 659 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049969-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14563092
title: CalEnviroScreen Source Data

description: Published by the California Office of Environmental Health Hazard Assessment (OEHHA), CalEnviroScreen is a screening methodology that can be used to help identify California communities that are disproportionately burdened by multiple sources of pollution. This data was downloaded from the CalEnviroScreen website and processed by the Environmental Data & Governance Initiative (EDGI) The URL for the original data is: https://oehha.ca.gov/calenviroscreen/report/calenviroscreen-40 

There are two files in this deposit:



calenviroscreen40resultsdatadictionaryf2021.zip - a zip file containing (1) a spreadsheet showing raw data and calculated percentiles for individual indicators and combined CalEnviroScreen scores for individual census tracts with additional demographic information. (2) a pdf document including the data dictionary and information on zeros and missing values: CalEnviroScreen 4.0 Excel and Data Dictionary PDF.

alenviroscreen40shpf2021shp.zip - a zip file containing the shapefile for the CalEnviroScreen 4.0 results
DOI: 10.5281/zenodo.14563093
title: CalEnviroScreen Source Data

description: Published by the California Office of Environmental Health Hazard Assessment (OEHHA), CalEnviroScreen is a screening methodology that can be used to help identify California communities that are disproportionately burdened by multiple sources of pollution. This data was downloaded from the CalEnviroScreen website and processed by the Environmental Data & Governance Initiative (EDGI) The URL for the original data is: https://oehha.ca.gov/calenviroscreen/report/calenviroscreen-40 

There are two files in this deposit:



calenviroscreen40resultsdatadictionaryf2021.zip - a zip file containing (1) a spreadsheet showing raw data and calculated percentiles for individual indicators and combined CalEnviroScreen scores for individual census tracts with additional demographic information. (2) a pdf document including the data dictionary and information on zeros and missing values: CalEnviroScreen 4.0 Excel and Data Dictionary PDF.

alenviroscreen40shpf2021shp.zip - a zip file containing the shapefile for the CalEnviroScreen 4.0 results
DOI: 10.15468/dl.b8hk2a
title: Occurrence Download

description: A dataset containing 4778 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Zalophus wollebaeki Sivertsen, 1953"
 ]
}

 The dataset includes 4778 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049971-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13844200
title: Data for Cerny Oliveira et al. A Machine Learning Approach to Automate Microinfarct and Microhemorrhage Screening in Hematoxylin and Eosin-stained Human Brain Tissues

description: Dataset containing 66 de-identified whole slide images (WSIs) with names matching table names in paper.

Paper: "A Machine Learning Approach to Automate Microinfarct and Microhemorrhage Screening in Hematoxylin and Eosin-stained Human Brain Tissues"

Details: A total of 66 .svs/.czi  WSIs, de-identified using svs-deidentifier v 0.9.1-beta (https://github.com/pearcetm/svs-deidentifier/releases)/macro provided by Carl Zeiss respectively. Evaluation and training were conducted on original files with identifiers. Dataset is uploaded in batches due to Zenodo data upload limitations.

Slide curation/preparation: All samples were retrieved from archives of the University of California, Davis Alzheimer’s Disease Center Brain Bank (https://www.ucdmc.ucdavis.edu/alzheimers/). Archival samples analyzed in this study were 5 μm formalin fixed, paraffin embedded sections of the superior and middle temporal gyrus from human brain. The tissue had been previously stained with hematoxylin and eosin. All slides were digitized using an Aperio AT2 or Axio Scan Z1 between 20x and 40x magnification. 

Code: Please refer to https://github.com/ucdrubinet/Infarct
DOI: 10.5281/zenodo.13844199
title: Data for Cerny Oliveira et al. A Machine Learning Approach to Automate Microinfarct and Microhemorrhage Screening in Hematoxylin and Eosin-stained Human Brain Tissues

description: Dataset containing 66 de-identified whole slide images (WSIs) with names matching table names in paper.

Paper: "A Machine Learning Approach to Automate Microinfarct and Microhemorrhage Screening in Hematoxylin and Eosin-stained Human Brain Tissues"

Details: A total of 66 .svs/.czi  WSIs, de-identified using svs-deidentifier v 0.9.1-beta (https://github.com/pearcetm/svs-deidentifier/releases)/macro provided by Carl Zeiss respectively. Evaluation and training were conducted on original files with identifiers. Dataset is uploaded in batches due to Zenodo data upload limitations.

Slide curation/preparation: All samples were retrieved from archives of the University of California, Davis Alzheimer’s Disease Center Brain Bank (https://www.ucdmc.ucdavis.edu/alzheimers/). Archival samples analyzed in this study were 5 μm formalin fixed, paraffin embedded sections of the superior and middle temporal gyrus from human brain. The tissue had been previously stained with hematoxylin and eosin. All slides were digitized using an Aperio AT2 or Axio Scan Z1 between 20x and 40x magnification. 

Code: Please refer to https://github.com/ucdrubinet/Infarct
DOI: 10.15468/dl.eke26k
title: Occurrence Download

description: A dataset containing 2267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 2267 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049972-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pwesnn
title: Occurrence Download

description: A dataset containing 456897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Oceania",
 "Country is Australia",
 "Geometry POLYGON((151.1822 -33.98217,151.27509 -33.98161,151.28383 -33.87985,151.21739 -33.88112,151.15185 -33.87899,151.16506 -33.9365,151.1822 -33.98217))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY 4.0",
 "OccurrenceStatus is Present",
 "Year 1990-2024"
 ]
}

 The dataset includes 456897 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049970-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14237103
title: Global land cover change maps from 2001 to 2020

description: This dataset supports the manuscript "Large global cropland expansion and forest decline from 2001 to 2020" currently under review. Please contact the first author (chen4371@purdue.edu) for citations and recent updates.
DOI: 10.5281/zenodo.14237104
title: Global land cover change maps from 2001 to 2020

description: This dataset supports the manuscript "Large global cropland expansion and forest decline from 2001 to 2020" currently under review. Please contact the first author (chen4371@purdue.edu) for citations and recent updates.
DOI: 10.15468/dl.wg9p5u
title: Occurrence Download

description: A dataset containing 21214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solanaceae"
 ]
}

 The dataset includes 21214 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049974-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.