cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8hs68w9m8m.1
title: Data for: Firm exit, technological progress and trade

description: Abstract of associated article: The dynamics of export market exit and firm closure have found limited attention in the new heterogeneous-firms trade literature. In fact, several of the predictions on firm survival and exit stemming from this new class of models are at odds with the stylized facts. Empirically, higher productivity firms survive longer, most firm closures are young firms, higher productivity exporters are more likely to continue to export compared to less productive exporters and market exits as well as firm closures are typically preceded by periods of contracting market shares. The present paper shows that the simple inclusion of exogenous economy wide technological progress into the standard Melitz (2003) model generates a tractable dynamic framework that generates endogenous exit decisions of firms in line with the stylized facts. Furthermore, we derive the effects of faster technological progress and trade liberalization on export market exit and firm closure.
DOI: 10.5061/dryad.00vg4/5
title: CytbLPrey

description: Partial Cytochrome b (Part 2) sequences obtained from sequencing of the amplification of the DNA from excrement with specific primers for arthropodes
DOI: 10.5061/dryad.00vg4/6
title: Samples List final

description: Samples used in the study
DOI: 10.5061/dryad.10460/1
title: tall and short grass cover and functional group leaf traits

description: This data shows cover and frequency estimates for functional groups of forbs, grasses, sedges (shortened as Sed to database) and legumes (shortened to Leg)  with progressive herbivore exclosures and the mean leaf traits of teach of these functional groups including SLA, LN, LP, LC and LNC.
DOI: 10.5061/dryad.16df2/1
title: Sys deb FF adulvs vs. juveniles

description: Composit flicker fusion data for adult and juvenile specimens of Systellaspis debilis
DOI: 10.5061/dryad.16df2/2
title: V log I adults vs juveniles sys deb

description: Voltage vs. log intensity for adults and juveniles specimens of Systellaspis debilis
DOI: 10.5061/dryad.16df2/3
title: gnatho latency data 5 7 10

description: Response latency data for Gnathophausia ingens adults and juveniles at 3 different temperatures
DOI: 10.5061/dryad.16df2/4
title: Gnatho Vlog I juvie vs. adult

description: Voltage vs. log intensity data for juvenile and adult specimens of Gnathophausia ingens
DOI: 10.5061/dryad.24gs0/1
title: Chagos_DATA_Proc

description: Vulnerability and Abondance of fish functional entities for Chagos data
DOI: 10.5061/dryad.24gs0/2
title: French_Pol_DATA_Proc

description: Vulnerability and Abondance of fish functional entities for French Polynesia data
DOI: 10.5061/dryad.24gs0/3
title: New_Cal_DATA_Proc

description: Vulnerability and Abondance of fish functional entities for New Caledonia data
DOI: 10.5061/dryad.48qd5/2
title: Microsatellite data of Microbotryum samples from Dianthus host species
DOI: 10.5061/dryad.4ch98/1
title: EMG_and_force_data

description: This zip file includes time, EMG signals (14 muscles) and force data (vertical component) for each subject.
DOI: 10.5061/dryad.4m7m1/1
title: raw data  size-fractionated 20161206

description: OTU table (97% sequence similarity threshold after quality filtered) and the raw physico-chemical parameters
DOI: 10.5061/dryad.50tq3/6
title: maximum_likelihood_phylogeny
DOI: 10.5061/dryad.50tq3/7
title: orthoMCL_analysis
DOI: 10.5061/dryad.50tq3/8
title: protein_structure
DOI: 10.5061/dryad.50tq3/9
title: transcriptome_comparison
DOI: 10.5061/dryad.7309b/18
title: Sample E769, concentration=1.46 Billion/ml
DOI: 10.5061/dryad.7309b/19
title: Sample E769, concentration=1.70 Billion/ml
DOI: 10.5061/dryad.7309b/20
title: Sample E769, concentration=2.04 Billion/ml
DOI: 10.5061/dryad.7309b/21
title: Sample E828, concentration=0.30 Billion/ml
DOI: 10.5061/dryad.7309b/22
title: Sample E828, concentration=0.41 Billion/ml
DOI: 10.5061/dryad.7309b/23
title: Sample E828, concentration=0.61 Billion/ml
DOI: 10.5061/dryad.7309b/24
title: Sample E828, concentration=0.70 Billion/ml
DOI: 10.5061/dryad.7309b/25
title: Sample E828, concentration=0.81 Billion/ml
DOI: 10.5061/dryad.75s6t/1
title: text files

description: Data are provided for: Fig. 2 panels a (avgHUdfs10.txt) and b (vigilance_largescale.txt): vigilance as a function of distance from shore; Fig. 3: Number of individuals that were observed in nearshore dangerous and offshore safe habitat, shown for the 40 m (ch.knots.40m.txt ) and 500 m (ch.knots.500m.txt) danger zone boundaries; for the Multi-state mark-recapture analyses with use of the RMark package, including fig. 4(cr.knots.May2015.txt)
DOI: 10.5061/dryad.84bp7/1
title: MCC_tree

description: Maximum Clade Credibility tree for 22 species included in this study, based on a multilocus species tree obtained with *BEAST. The node values include Bayesian posterior probabilities and the bars indicate 95% High Posterior Density (HPD) intervals. (Included as Supplementary Figure S2.)
DOI: 10.5061/dryad.8m3t6/1
title: Raw_Illumina_Data_1

description: Raw_Illumina_Data_1
DOI: 10.5061/dryad.8m3t6/2
title: Raw_Illumina_Data_2

description: Raw_Illumina_Data_2
DOI: 10.5061/dryad.8m3t6/3
title: Raw_Illumina_Data_3

description: Raw_Illumina_Data_3
DOI: 10.5061/dryad.8m3t6/4
title: Raw_Illumina_Data_4

description: Raw_Illumina_Data_4
DOI: 10.5061/dryad.8v0h7/1
title: StubberudEtA_Datafile_MolEcol2017

description: The data file contains the individual information needed to estimate Ne and carry out the sensitivity analyses. There is one row per year an individual was recorded as adult in the indicated population. The variables included are: Population (see information in Table 1); ID (unique individual identity number); Sex (1=male, 2=female); Year (the year for which the data on the row relates to); OwnSurvival (0=the individual did not survive to the next year, 1=the individual survived to the next year); NRecruits (the number of recruits produced by the individual in the given year). See the paper for further details on the data.
DOI: 10.5061/dryad.bh213/1
title: Supplementary material

description: Supplementary material
DOI: 10.5061/dryad.bh213/2
title: Raw data

description: Raw data
DOI: 10.5061/dryad.dt115/3
title: Variance in measures of fitness over time

description: This file contains the variance in the the two measures of fitness (final density and maximum growth rate), measured over time, for both the LB and the minimal glucose population.
DOI: 10.5061/dryad.dt115/4
title: Corellatin between streptomycin and nalidixic acid mutation rates

description: This file describes the correlation between the maximum likelihood estimates of the streptomycin rates and the nalidixic acid rates for both the LB and the MG populations
DOI: 10.5061/dryad.dt115/5
title: Effect of tetracycline on mutation rate
DOI: 10.5061/dryad.f77k3.2
title: Data from: Selection for mechanical advantage underlies multiple cranial optima in new world leaf-nosed bats
DOI: 10.5061/dryad.f77k3.2/1.2
title: Dumont_etal2014_Evolution_engineering_model_output

description: Date from engineering model used as input in Brownian motion and Ornstein-Uhlenbeck models of trait evolution.
DOI: 10.5061/dryad.f77k3.2/2.2
title: Supplementary methods

description: Supplementary methods: engineering model, qualitative and quantitative validation, and phylogenetics
DOI: 10.5061/dryad.fn5g2/1
title: temporal community matrix

description: Site by species matrix
DOI: 10.5061/dryad.fn5g2/2
title: traits

description: trait data for all species
DOI: 10.5061/dryad.fn5g2/3
title: Three phylogenies
DOI: 10.5061/dryad.h5p79/1
title: Load-depth curves

description: The .zip file contains the load-depth curves of all indentations in .txt, .hys and .lfb format performed with the Hysitron TriboIndenter TI 900 (Hysitron Inc., Minneapolis, MN, USA). The data files were loaded, viewed and analyzed with the software provided with the indenter (TriboScan, Hysitron Inc., Minneapolis, MN, USA). The files are divided in two main folders. One folder contains all measurements performed in transverse direction (transverse) and the other contains all measurements in longitudinal direction (longitudinal). These folders contains subfolders named after the samples. They are subsequently divided in sub-subfolders, which contains a set of six indentations each. P: proximal region; C: central region; D: distal region. Mxx: mouse number and right or left femur (e.g. M1L: mouse no. 1, left femur).
DOI: 10.5061/dryad.j11s7/1
title: mtDNA gene alignments

description: A zipped folder containing alignments of mtDNA genes.
DOI: 10.5061/dryad.jb10h/1
title: Tethering data November 2013 crab ecotype

description: Tethering results for November 2013 at high and mid intertidal levels at Cabo Silleiro with 4 mm crab ecotype and 9 mm crab ecotype. 2nd sheet has codes for shell fragments.
DOI: 10.5061/dryad.jb10h/2
title: Tethering April June 2014 4mm crab and wave ecotypes

description: Tethering results for April to June 2014 at high, mid, and low intertidal levels at Cabo Silleiro with 4 mm crab ecotype and 4 mm wave ecotype. 2nd sheet has codes for shell fragments.
DOI: 10.5061/dryad.m47c5/1
title: STJA behavior and acoustic data

description: STJA_latency is the measurement of the latency to resume foraging and is measure in seconds. STJA_acoustic_responses is the averages per playback/exposure period of all the acoustic variables explored in the project.
DOI: 10.5061/dryad.m68q0/1
title: MMace CVR study data

description: Two folders pertaining to the feedforward and feedback experiments. Each contains subfolders separating subjects and different tasks. The raw data is given in human-readable text files. Also included is an excel file with collated data from the questionnaires.
DOI: 10.5061/dryad.n7v81/1
title: Data HA
DOI: 10.5061/dryad.nr1td/1
title: Table S1 - Voucher Data

description: Voucher information for specimens included in the phylogenetic analyses.
DOI: 10.5061/dryad.nr1td/2
title: DNA Matrices

description: DNA matrices for the concatenated dataset and single gene fragments.
DOI: 10.5061/dryad.nr1td/3
title: Voucher Images

description: Photographs for DNA voucher specimens included in the phylogenetic analyses
DOI: 10.5061/dryad.nr1td/4
title: Characters scores

description: Matrices used in the stochastic mapping of pronotal trais
DOI: 10.5061/dryad.pb2rp/1
title: dryad data

description: This spreadsheet contains the combined data gathered from individual Vespula vulgaris workers. Nestcode: nests ordered by size from A to F; FatherID, MotherID: codes for a workers father and mother; cqpros, cqeif, cqdicer, cqkiller, cqkbv: Cq (gene expression) values of Eif3-S8, Pros54, Dicer, Superkiller, and the virus Kashmir Bee Virus (KBV), mean cqref: mean of cqpros and cqeif; dcqdicer, dcqkiller, dcqkbv: delta cq values relative to reference gene expression (mean cqref); nest area, worker area, queen area: area of all, worker or queen cells respectively; total cell, worker cell, queen cell: calculated number of cells in respective areas; k: number of fathers; ke3: effective paternity; ped_R: pedigree relatedness.
DOI: 10.5061/dryad.s056d/1
title: Silvestritermes minutus microsatellite loci

description: Sequences for 8 microsatellite loci developed from Silvestritermes minutus (Sm) and 3 microsatellite loci developed from Embiratermes neotenicus (En).
DOI: 10.5061/dryad.s056d/2
title: Fougeyrollas et al GENOTYPES

description: Genotypes recorded in 12 colonies of Silvestritermes minutus at 12 microsatellite loci (inf., inferred; gen. genotyped)
DOI: 10.5061/dryad.v8gr4/1
title: ArtificialPlayback_Details

description: Data on acoustic response for each artificial playback pulse for each test mosquito recorded in the laboratory. Each mosquito has unique ID number. Here, Synch indicated harmonic convergence.
DOI: 10.5061/dryad.v8gr4/2
title: Artificial Playbacks Summary

description: Summary information for each test mosquito provided artificial playbacks
DOI: 10.5061/dryad.v8gr4/3
title: Live Pair Data

description: Details of acoustic interactions and mating attempt outcomes for all body size combinations.
DOI: 10.5061/dryad.v8gr4/4
title: Live Recording Playback Detailed

description: Data on acoustic response for each live recording playback pulse for each test mosquito. Each mosquito has unique ID number.
DOI: 10.5061/dryad.v8gr4/5
title: Live Recording Playback Summary

description: Summary information for each test mosquito provided live recording playbacks.
DOI: 10.5061/dryad.vp8n9/1
title: Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for each isolate

description: Genetic data (gene haplotypes and microsatellite genotypes) and geographic sampling locations for the 108 Plasmopara viticola isolates.Column description:Isolate_ID: unique isolate identifierLat: latitude in decimal degreesLong: longitude in decimal degreesWine_region: region of originTrait_data: indicates whether quantitative traits were recorded for this isolate (see the « PV_trait_data.txt » file)Fungicide_category: resistance to CAA and QoI fungicidescytb_hap: cytochrome b haplotype. Names follow Chen et al. 2007CesA3_short_hap1 & 2: CesA3 (short fragment) haplotypesCesA3_long_hap1 & 2: CesA3 (long fragment) haplotypesThe last 23 columns give the allele sizes for the amplified microsatellite loci (1 column per locus, each allele is coded by a 3 digit number).Missing data are encoded by "999".
DOI: 10.5061/dryad.vp8n9/2
title: Quantitative traits of pathogenicity of Plasmopara viticola

description: Quantitative traits of pathogenicity of Plasmopara viticola when inoculated on two different hosts (susceptible: Vitis vinifera cv. Cabernet sauvignon, CS and partially resistant: Cabernet carbon, CC).

108 isolates from the Bordeaux wine region were used and 8 (on CS) and 6 (on CC) leaf discs were inoculated for each isolate (i.e. repetition). The final sample analysed consisted of 1357 leaf discs corresponding to 214 plant-pathogen interactions.

Details for each isolate (geographic locations and genetic data) are described in the « PV_genetic_data » file of this package. Cells left blank indicate missing data.

The « Latency_Ndays » column indicates the latency period (number of days between inoculation and the first recorded sporangia). The « Sporangium_prod_per_mm2 » column indicates the number of sporangia per mm2 of leaf disc counted at seven days post inoculation (cumulative, over seven days of infection). The « Sporangium_size_µm » column indicates the weighted average of sporangium size. The « nbzoo_per_sporangium » column indicates the number of zoospores contained by each sporangium (on two leaf discs per isolate). The « T50 » column indicates the time at which the pathogen reached 50% of its maximal sporulation at 7 dpi. The « slope_at_T50 » column indicates the slope of the curve (sporulation vs. time) at T50. The « phenotype_CAA » column indicates whether the isolate is resistant or sensitive to CAA fungicides (see the « PV_genetic_data » file of this package). The « phenotype_QOI » column indicates whether the isolate is resistant or sensitive to QoI fungicides (see the « PV_genetic_data » file of this package). The « Fungicide category » column indicates whether the isolate is resistant and/or sensitive to CAA and QoI fungicides.
DOI: 10.5061/dryad.vp8n9/3
title: DNA sequences (cytb gene)
DOI: 10.5061/dryad.vp8n9/4
title: DNA sequences (CesA3 gene, short fragment)
DOI: 10.5061/dryad.vp8n9/5
title: DNA sequences (CesA3 gene; long fragment)

description: Note that North-American isolates have IDs beginning with MSU
DOI: 10.5061/dryad.16df2/5
title: flicker fusion Gnathophausia ingens

description: Flicker fusion data for Gnathophausia ingens adults and juveniles
DOI: 10.5061/dryad.289kh/1
title: Mammalian Vocalisation Frequency Data

description: Minimum and maximum frequencies of vocalisation for mammalian species, gathered from the literature. Body mass data was obtained from the PanTHERIA database by Jones et al. (2009).
DOI: 10.5061/dryad.2n16f/1
title: BTG_chicks_telomere and measurements
DOI: 10.5061/dryad.2q9r7/1
title: Holman imbalance Appendix 1

description: Proof that weighted mean imbalance approaches an asymptote less than 1 as number of species increases, for a large class of age-dependent models
DOI: 10.5061/dryad.2q9r7/2
title: Holman imbalance Appendix 2

description: Analysis of imbalance in simulated trees generated by the Weibull model
DOI: 10.5061/dryad.2q9r7/4
title: Holman imbalance Folder 1

description: Program source code with sample input and output for Appendix 2
DOI: 10.5061/dryad.2q9r7/5
title: Holman imbalance Folder 2

description: Program source code with sample input and output for Appendix 3
DOI: 10.5061/dryad.2q9r7/6
title: Holman imbalance Appendix 3

description: Analysis of imbalance in an empirical tree of life
DOI: 10.5061/dryad.6ht2c/1
title: isoenzymes_flux_balance.tar

description: All data and scripts to produce the figures and numbers in the paper.
DOI: 10.5061/dryad.71s06/1
title: Supplemental_Material_S3-S5

description: Supplemental Material S3: Alignments of retrotransposon markers for Chiroptera-Perissodactyla-Cetartiodactyla-Carnivora relationships.
Supplemental Material S4: Concatenated alignments of retrotransposon flanking regions.
Supplemental Material S5: Alignments of deletion markers.
DOI: 10.5061/dryad.7309b/26
title: Sample E828, concentration=0.98 Billion/ml
DOI: 10.5061/dryad.7309b/27
title: Sample E828, concentration=1.22 Billion/ml
DOI: 10.5061/dryad.7309b/28
title: Sample E7264, concentration=2.96 Billion/ml
DOI: 10.5061/dryad.7309b/29
title: Sample E509, concentration=0.85 Billion/ml
DOI: 10.5061/dryad.7309b/30
title: Sample E510, concentration=0.43 Billion/ml
DOI: 10.5061/dryad.7309b/31
title: Read me
DOI: 10.5061/dryad.7h81d/1
title: List of exons and DEXseq analysis in RNAseq data set E-MTAB-6008.

description: This data set was created using cufflinks and DEXseq, using Ensembl GRCh37 version 72 as input annotation. For detailled description, see associated publication. Columns included are genomic position, Ensembl transcript and exon ID, base mean across conditions, and statistical testing by DEXseq. Exon_class indicated if the exon is an Alu-exon, a cryptic exon, or not. UCSCoverlap and type indicate if the exon is annotated by UCSC, and if it is a constitutive or alternative exon. If the exon is not annotated in UCSC, it's called a cryptic exon. Stand_alone exons are not predicted by cufflinks to overlap with another exon. The table also includes the number of junction reads confirming either splice site. In addition, we predicted premature stop codons in protein coding genes; for PTC+ exons it includes the distance between the PTC and downstream exon-exon junction, the following (second) exon-exon junction, the number of downstream exons. The last two columns show the ID after merging all discovered Alu-exons with UCSC annotated Alu-exons, and the grouping of evolutionary groups shown in Figure 5 of the associated publication.
DOI: 10.5061/dryad.7s6s8/1
title: Raw 454 reads and mapping files for planktonic protistan communities in Scandinavian lakes

description: This zip-file contains: 1) raw reads from 454 Roche sequencing machine (.sff) 2) qual file (.qual) 3) raw reads (.fna) 4) flowgram file (.flow) 5) mapping file for forward reads (.txt) and 6) mapping file for reverse reads (.txt). In forward mapping file forward primer is the linker primer and in reverse mapping file reverse primer is the linker primer to recover all reads from the mixed orientation raw data.
DOI: 10.5061/dryad.86mh8/1
title: Supporting_Information_S3_Script

description: R script associated with Supporting Information S3
DOI: 10.5061/dryad.86mh8/2
title: Supporting_Information_S8
DOI: 10.5061/dryad.8jm51/1
title: Ochotona collaris distribution points

description: Distribution points used to generate ENMs for Ochotona collaris
DOI: 10.5061/dryad.8jm51/2
title: Marmota caligata distribution points

description: Distribution points used to generate ENMs for Marmota caligata
DOI: 10.5061/dryad.8jm51/3
title: Microtus miurus  distribution points

description: Distribution points used to generate ENMs for Microtus miurus
DOI: 10.5061/dryad.8jm51/4
title: Lemmus trimucronatus  distribution points

description: Distribution points used to generate ENMs for Lemmus trimucronatus
DOI: 10.5061/dryad.8jm51/5
title: Spermophilus parryi  distribution points

description: Distribution points used to generate ENMs for Spermophilus parryi
DOI: 10.5061/dryad.8jm51/6
title: Processing of Illumina reads with script: deMultiplex_V7

description: This script compare each sequence first n letters to barcode list and assign them to different species, add SpNum/MID number to each sequence, and output statistics of barcode, including errors.
DOI: 10.5061/dryad.8m3t6/10
title: Raw_Illumina_Data_10

description: Raw_Illumina_Data_10
DOI: 10.5061/dryad.8m3t6/11
title: Raw_Illumina_Data_11

description: Raw_Illumina_Data_11
DOI: 10.5061/dryad.8m3t6/5
title: Raw_Illumina_Data_5

description: Raw_Illumina_Data_5
DOI: 10.5061/dryad.8m3t6/6
title: Raw_Illumina_Data_6

description: Raw_Illumina_Data_6
DOI: 10.5061/dryad.8m3t6/7
title: Raw_Illumina_Data_7

description: Raw_Illumina_Data_7
DOI: 10.5061/dryad.8m3t6/8
title: Raw_Illumina_Data_8

description: Raw_Illumina_Data_8
DOI: 10.5061/dryad.8m3t6/9
title: Raw_Illumina_Data_9

description: Raw_Illumina_Data_9
DOI: 10.5061/dryad.8tk26/1
title: Sample Blot 1
DOI: 10.5061/dryad.bg3g3/1
title: NR alignments

description: NR alignments
DOI: 10.5061/dryad.bg3g3/2
title: Structural_partitions

description: Structural_partitions
DOI: 10.5061/dryad.dc863/1
title: Elevation, slope, aspect, and vegetation classes for 1972 and 2012

description: Three sub-areas  covering a total projected area of about 14 ha in the western Chugach Mountains of southcentral Alaska were digitized and attributed by vegetation class for 1972 and 2012 from a series of orthophotos. A 1m pixel digital elevation model provided elevation, slope, and aspect (DEM variables). This file contains the DEM attributes and vegetation classification for each 1m pixel.
DOI: 10.5061/dryad.dc863/2
title: 2000 random points for statistical modeling

description: 2000 random points across the three study sub-areas were selected for statistical modeling in binomial generalized linear mixed models. These points have digital elevation model (DEM) variables (elevation, slope, aspect, potential insolation in four seasons) and vegetation classifications for 1972 and 2012.
DOI: 10.5061/dryad.dc863/3
title: Soil pit moisture data

description: Soil pits with location and moisture content. This file has the location data for temperature data loggers listed in the file Soil Temperature data file.
DOI: 10.5061/dryad.dc863/4
title: Soil Temperature Data

description: Soil temperatures at 15 cm for up to one year. The samples were blocked by location for up to three vegetation classes (alder, willow, and tundra) but unbalanced.
DOI: 10.5061/dryad.dr4j0/1
title: Low-Resolution Calling Effort Scans

description: Low-resolution calling effort scans for 31 nights (individual files). The first column refers to the unique 3-letter colour codes of individuals followed by the time at which the individuals were first sighted (2nd column). The next set of columns, except the last two, represent the calling activity marked in binary (1 for calling and 0 for non-calling), with headings indicating the start of scan sampling. The final two columns represent the distance (r) and angle (theta) of the calling site from a given reference point.