cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3407938.v2
title: Effect of Ebola outbreak on tuberculosis care in Conakry, Guinea

description: <b>S1_TBHW_FINAL.rec. </b>This is the database about health workers before and during Ebola Outbreak in Conakry, Guinea, 2014. <b>S2_TB_EVD_PATIENTS_FINAL.dta. </b>This is the database about Tuberculosis patients before and during Ebola Outbreak in Conakry, Guinea, 2014.. <b>S3_TBSTOCK_FINAL.rec. </b>This is the database about stockouts of Tuberculosis drugs before and during Ebola Outbreak in Conakry, Guinea, 2014.. <b>S4_TBPRESUM_FINAL.rec. </b>This is the database about Tuberculosis presumptive cases before and during Ebola Outbreak in Conakry, Guinea, 2014..
DOI: 10.6084/m9.figshare.3407938.v1
title: S1_TBHW_FINAL.dta

description: <b>S1_TBHW_FINAL.rec. </b>This is the database about health workers before and during Ebola Outbreak in Conakry, Guinea, 2014. <b>S2_TB_EVD_PATIENTS_FINAL.dta. </b>This is the database about Tuberculosis patients before and during Ebola Outbreak in Conakry, Guinea, 2014.. <b>S3_TBSTOCK_FINAL.rec. </b>This is the database about stockouts of Tuberculosis drugs before and during Ebola Outbreak in Conakry, Guinea, 2014.. <b>S4_TBPRESUM_FINAL.rec. </b>This is the database about Tuberculosis presumptive cases before and during Ebola Outbreak in Conakry, Guinea, 2014..
DOI: 10.17608/k6.auckland.3407935
title: In vitro and in vivo characterisation of a bioluminescent strain (ICC180) of the enteric bacterium Citrobacter rodentium

description: Raw data used to generate figures for manuscript describing the in vitro and in vivo characterisation of a bioluminescent derivative of the bacterium <i>Citrobacter rodentium. </i>
DOI: 10.17608/k6.auckland.3407935.v1
title: In vitro and in vivo characterisation of a bioluminescent strain (ICC180) of the enteric bacterium Citrobacter rodentium

description: Raw data used to generate figures for manuscript describing the in vitro and in vivo characterisation of a bioluminescent derivative of the bacterium <i>Citrobacter rodentium. </i>
DOI: 10.6084/m9.figshare.3407632
title: Sex Differences in the Default Mode Network with Regard to Autism Spectrum Traits: A Resting State fMRI Study

description: Autism spectrum traits exist on a continuum and are more common in males than in females, but the basis for this sex difference is unclear. To this end, the present study draws on the extreme male brain theory, investigating the relationship between sex difference and the default mode network (DMN), both known to be associated with autism spectrum traits. Resting-state functional magnetic resonance imaging (MRI) was carried out in 42 females (mean age ± standard deviation, 22.4 ± 4.2 years) and 43 males (mean age ± standard deviation, 23.8 ± 3.9 years) with typical development. Using a combination of different analyses (viz., independent component analysis (ICA), fractional amplitude of low-frequency fluctuation (fALFF), regional homogeneity (ReHo), and seed-based analyses), we examined sex differences in the DMN and the relationship to autism spectrum traits as measured by autism-spectrum quotient (AQ) scores. We found significant differences between female and male subjects in DMN brain regions, with seed-based analysis revealing a significant negative correlation between default-mode resting state functional connectivity of the anterior medial prefrontal cortex seed (aMPFC) and AQ scores in males. However, there were no relationships between DMN sex differences and autism spectrum traits in females. Our findings may provide important insight into the skewed balance of functional connectivity in males compared to females that could serve as a potential biomarker of the degree of autism spectrum traits in line with the extreme male brain theory.
DOI: 10.6084/m9.figshare.3407632.v1
title: Sex Differences in the Default Mode Network with Regard to Autism Spectrum Traits: A Resting State fMRI Study

description: Autism spectrum traits exist on a continuum and are more common in males than in females, but the basis for this sex difference is unclear. To this end, the present study draws on the extreme male brain theory, investigating the relationship between sex difference and the default mode network (DMN), both known to be associated with autism spectrum traits. Resting-state functional magnetic resonance imaging (MRI) was carried out in 42 females (mean age ± standard deviation, 22.4 ± 4.2 years) and 43 males (mean age ± standard deviation, 23.8 ± 3.9 years) with typical development. Using a combination of different analyses (viz., independent component analysis (ICA), fractional amplitude of low-frequency fluctuation (fALFF), regional homogeneity (ReHo), and seed-based analyses), we examined sex differences in the DMN and the relationship to autism spectrum traits as measured by autism-spectrum quotient (AQ) scores. We found significant differences between female and male subjects in DMN brain regions, with seed-based analysis revealing a significant negative correlation between default-mode resting state functional connectivity of the anterior medial prefrontal cortex seed (aMPFC) and AQ scores in males. However, there were no relationships between DMN sex differences and autism spectrum traits in females. Our findings may provide important insight into the skewed balance of functional connectivity in males compared to females that could serve as a potential biomarker of the degree of autism spectrum traits in line with the extreme male brain theory.
DOI: 10.6084/m9.figshare.3407629
title: Preferences for sources of threat-related information

description: Data for paper "Preferences for sources of threat-related information" by Boyer and Parren
DOI: 10.6084/m9.figshare.3407629.v1
title: Preferences for sources of threat-related information

description: Data for paper "Preferences for sources of threat-related information" by Boyer and Parren
DOI: 10.6084/m9.figshare.3407548
title: Integration of the IRUS-UK Statistics in the CORE Repositories Dashboard

description: Institutional Repository Usage Statistics UK (IRUS-UK) is a Jisc-funded project that serves as a national repository usage statistics aggregation service, which aims to provide article download statistics from UK repositories. At CORE, a full-text aggregation service, we wanted to present the information regarding the manuscripts’ downloads to repository managers and therefore, we have integrated into the CORE Repositories Dashboard, a content management tool designed for repository managers, the IRUS-CORE statistics. Currently, there are 93 repositories participating in IRUS-UK project that are also harvested in CORE.
DOI: 10.6084/m9.figshare.3407548.v2
title: Integration of the IRUS-UK Statistics in the CORE Repositories Dashboard

description: Institutional Repository Usage Statistics UK (IRUS-UK) is a Jisc-funded project that serves as a national repository usage statistics aggregation service, which aims to provide article download statistics from UK repositories. At CORE, a full-text aggregation service, we wanted to present the information regarding the manuscripts’ downloads to repository managers and therefore, we have integrated into the CORE Repositories Dashboard, a content management tool designed for repository managers, the IRUS-CORE statistics. Currently, there are 93 repositories participating in IRUS-UK project that are also harvested in CORE.
DOI: 10.6084/m9.figshare.3407500
title: Gold Open Access Journals 2011-2015

description: This dataset is the result of a comprehensive analysis of serious open access journals in the Directory of Open Access Journals as of December 31, 2015. Starting with DOAJ data (journal title, URL, publisher, starting date) the dataset adds Article Processing Charge (if any), article counts for 2011-2015, and whether journal is in trimmed DOAJ as of May 2016. More info and book links: http://waltcrawford.name/goaj.html<br>
DOI: 10.6084/m9.figshare.3407500.v1
title: Gold Open Access Journals 2011-2015

description: This dataset is the result of a comprehensive analysis of serious open access journals in the Directory of Open Access Journals as of December 31, 2015. Starting with DOAJ data (journal title, URL, publisher, starting date) the dataset adds Article Processing Charge (if any), article counts for 2011-2015, and whether journal is in trimmed DOAJ as of May 2016. More info and book links: http://waltcrawford.name/goaj.html<br>
DOI: 10.25345/c5wj2v
title: MassIVE MSV000086081 - Llorens et al Defense-related proteins in the apoplast of tomato plants treated with 1-MT
title: This submission contains the mass spectrometry files related to the manuscript by Llorens et al. that describes the characterization of the proteome profile of the apoplastic fluid in Tomato leaves, and its changes during the infection with Pseudomonas syringae and the treatment with the resistance inducer 1-MT.
DOI: 10.6084/m9.figshare.3407461
title: PLoS_2016.csvReplication data for PLOS ONE article on PubMed author disambiguation

description: Base data for estimating precision and recall of Author-ity among NIH-funded scientists
DOI: 10.6084/m9.figshare.3407449
title: Data from: Facilitation through altered resource availability in a mixed-species rodent malaria infection (Data for Figures 2 and 3)

description: This is the data for Figures 2 and 3, which was obtained as described in the material and methods of:Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters<br><br><b>Column header meanings:</b>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>method - whether parasite density data was obtained by pcr or microscopy<br>yoelii.cumulative - cumulative P. yoelii density (per ml), after 8 days of infection<br>chabaudi.cumulative - cumulative P. chabaudi density (per ml), after 8 days of infection<br>rbc.ml.d0 - number of red blood cells (rbc) per ml of blood, on day 0<br>retics.ml.d0 - number of young red blood cells (reticulocytes) per ml of blood, on day 0<br>prop.retic.d0 - proportion of reticulocytes relative to total red blood cells, on day 0<br>i.py.d0 - OD405 reading of IgG2a against crude antigen of P. yoelii, on day 0<br>i.pc.d0 - OD405 reading of IgG2a against MSP1 of P. chabaudi AS, on day 0 <br><i>Day 0 is the day of infection with P. yoelii or with a mixture of P. yoelii and P. chabaudi (see Figure 1 for details)</i>
DOI: 10.6084/m9.figshare.3407449.v1
title: Data for Figures 2 and 3

description: This is the data for Figures 2 and 3, which was obtained as described in the material and methods of:Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters<br><br><b>Column header meanings:</b>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>method - whether parasite density data was obtained by pcr or microscopy<br>yoelii.cumulative - cumulative P. yoelii density (per ml), after 8 days of infection<br>chabaudi.cumulative - cumulative P. chabaudi density (per ml), after 8 days of infection<br>rbc.ml.d0 - number of red blood cells (rbc) per ml of blood, on day 0<br>retics.ml.d0 - number of young red blood cells (reticulocytes) per ml of blood, on day 0<br>prop.retic.d0 - proportion of reticulocytes relative to total red blood cells, on day 0<br>i.py.d0 - OD405 reading of IgG2a against crude antigen of P. yoelii, on day 0<br>i.pc.d0 - OD405 reading of IgG2a against MSP1 of P. chabaudi AS, on day 0 <br><i>Day 0 is the day of infection with P. yoelii or with a mixture of P. yoelii and P. chabaudi (see Figure 1 for details)</i>
DOI: 10.6084/m9.figshare.3407449.v2
title: Data from Facilitation through altered resource availability in a mixed-species rodent malaria infection (Figures 2 and 3)

description: This is the data for Figures 2 and 3, which was obtained as described in the material and methods of:Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters<br><br><b>Column header meanings:</b>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>method - whether parasite density data was obtained by pcr or microscopy<br>yoelii.cumulative - cumulative P. yoelii density (per ml), after 8 days of infection<br>chabaudi.cumulative - cumulative P. chabaudi density (per ml), after 8 days of infection<br>rbc.ml.d0 - number of red blood cells (rbc) per ml of blood, on day 0<br>retics.ml.d0 - number of young red blood cells (reticulocytes) per ml of blood, on day 0<br>prop.retic.d0 - proportion of reticulocytes relative to total red blood cells, on day 0<br>i.py.d0 - OD405 reading of IgG2a against crude antigen of P. yoelii, on day 0<br>i.pc.d0 - OD405 reading of IgG2a against MSP1 of P. chabaudi AS, on day 0 <br><i>Day 0 is the day of infection with P. yoelii or with a mixture of P. yoelii and P. chabaudi (see Figure 1 for details)</i>
DOI: 10.6084/m9.figshare.3407449.v4
title: Data from: Facilitation through altered resource availability in a mixed-species rodent malaria infection (Data for Figures 2 and 3)

description: This is the data for Figures 2 and 3, which was obtained as described in the material and methods of:Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters<br><br><b>Column header meanings:</b>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>method - whether parasite density data was obtained by pcr or microscopy<br>yoelii.cumulative - cumulative P. yoelii density (per ml), after 8 days of infection<br>chabaudi.cumulative - cumulative P. chabaudi density (per ml), after 8 days of infection<br>rbc.ml.d0 - number of red blood cells (rbc) per ml of blood, on day 0<br>retics.ml.d0 - number of young red blood cells (reticulocytes) per ml of blood, on day 0<br>prop.retic.d0 - proportion of reticulocytes relative to total red blood cells, on day 0<br>i.py.d0 - OD405 reading of IgG2a against crude antigen of P. yoelii, on day 0<br>i.pc.d0 - OD405 reading of IgG2a against MSP1 of P. chabaudi AS, on day 0 <br><i>Day 0 is the day of infection with P. yoelii or with a mixture of P. yoelii and P. chabaudi (see Figure 1 for details)</i>
DOI: 10.6084/m9.figshare.3407449.v3
title: Data from: Facilitation through altered resource availability in a mixed-species rodent malaria infection (Figures 2 and 3)

description: This is the data for Figures 2 and 3, which was obtained as described in the material and methods of:Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters<br><br><b>Column header meanings:</b>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>method - whether parasite density data was obtained by pcr or microscopy<br>yoelii.cumulative - cumulative P. yoelii density (per ml), after 8 days of infection<br>chabaudi.cumulative - cumulative P. chabaudi density (per ml), after 8 days of infection<br>rbc.ml.d0 - number of red blood cells (rbc) per ml of blood, on day 0<br>retics.ml.d0 - number of young red blood cells (reticulocytes) per ml of blood, on day 0<br>prop.retic.d0 - proportion of reticulocytes relative to total red blood cells, on day 0<br>i.py.d0 - OD405 reading of IgG2a against crude antigen of P. yoelii, on day 0<br>i.pc.d0 - OD405 reading of IgG2a against MSP1 of P. chabaudi AS, on day 0 <br><i>Day 0 is the day of infection with P. yoelii or with a mixture of P. yoelii and P. chabaudi (see Figure 1 for details)</i>
DOI: 10.6084/m9.figshare.3407419
title: Data from: Facilitation through altered resource availability in a mixed-species rodent malaria infection (Data for Figure 4)

description: This is the data for Figure 4, which was obtained as described in the material and methods of:<br>Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters <br><b>Column header meanings:</b><br>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>prop.retics.mean - mean proportion of reticulocytes throughout the infection<br>rbc.ml.min - minimum number of red blood cells (rbc) per ml of blood measured throughout the infection<br>wgt.min - minimum weight (in grams) measured throughout the infection<br>dead - 0: mouse did not survive to the end of the experiment; 1: mouse survived to the end of the experiment
DOI: 10.6084/m9.figshare.3407419.v2
title: Data from: Facilitation through altered resource availability in a mixed-species rodent malaria infection (Data for Figure 4)

description: This is the data for Figure 4, which was obtained as described in the material and methods of:<br>Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters <br><b>Column header meanings:</b><br>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>prop.retics.mean - mean proportion of reticulocytes throughout the infection<br>rbc.ml.min - minimum number of red blood cells (rbc) per ml of blood measured throughout the infection<br>wgt.min - minimum weight (in grams) measured throughout the infection<br>dead - 0: mouse did not survive to the end of the experiment; 1: mouse survived to the end of the experiment
DOI: 10.6084/m9.figshare.12917747
title: Supplementary Material for: Comprehensive Immuno-Molecular Profiles for Liposarcoma: Roles of Programmed Death Ligand 1, Microsatellite Instability, and PIK3CA

description: <b><i>Background:</i></b> Developing personalized strategies for cancer has shown good efficacies. <b><i>Methods:</i></b> We assessed the molecular targets programmed death ligand 1 (PD-L1), microsatellite instability (MSI), and <i>PIK3CA</i>. Seventy-four patients with liposarcomas who underwent curative resection were assessed for PD-L1 expression in the tumor and tumor-infiltrating lymphocytes (TILs), mismatch repair proteins (MLH1, PMS2, MSH2, and MSH6) by immunohistochemistry, MSI using polymerase chain reaction, and <i>PIK3CA</i> mutation/amplification using pyrosequencing and fluorescence in situ hybridization. <b><i>Results:</i></b> Seventeen (23%) cases were TIL<sup>+</sup> (≥1 + expression) and associated with longer 5-year overall survival than those with TIL<sup>–</sup> tumors (84.4 vs. 60.8%, <i>p</i> = 0.007). Six (35.3%) PD-L1<sup>+</sup> tumors were detected only in TIL<sup>+</sup> cases, with none detected in tumor cells. Two well-differentiated liposarcomas showed MSI, one low and one high with concurrent loss of MLH1, MSH6, and PMS2. <i>PIK3CA</i> mutation was detected in 7 (9.5%) [exon 9 (<i>n</i> = 4) and exon 20 (<i>n</i> = 3)] and only 1 Q546K mutation was a PD-L1<sup>+</sup> tumor. <i>PIK3CA</i> copy number gain was detected in 18 (24.4%) and was associated with TIL<sup>+</sup> tumors (<i>p</i> = 0.045). <b><i>Conclusions:</i></b> Our comprehensive immuno-molecular panel suggests that liposarcoma should be categorized based on the molecular genomic subtype for precision medicine.
DOI: 10.6084/m9.figshare.3407419.v1
title: Data for Figure 4

description: This is the data for Figure 4, which was obtained as described in the material and methods of:<br>Ramiro RS, Pollitt LC, Mideo N & Reece SE. Facilitation through altered resource availability in a mixed-species rodent malaria infection. Ecology Letters <br><b>Column header meanings:</b><br>mouse - mouse number<br>treat - treatment code (as described in the methods)<br>prop.retics.mean - mean proportion of reticulocytes throughout the infection<br>rbc.ml.min - minimum number of red blood cells (rbc) per ml of blood measured throughout the infection<br>wgt.min - minimum weight (in grams) measured throughout the infection<br>dead - 0: mouse did not survive to the end of the experiment; 1: mouse survived to the end of the experiment
DOI: 10.6084/m9.figshare.3407338
title: Long-term effects of selective logging on dipterocarp populations in the Pasoh Forest Reserve, Malaysia

description: <b><i>Background</i></b>: Selective logging alters tree growth, mortality and recruitment, and the subsequent population dynamics of trees. However, little information is available on how tree populations reduce local extinction in logged forests. <b><i>Aims</i></b>: We evaluated the effects of selective logging on tree performance and population dynamics of five dominant dipterocarp species in the Pasoh Forest Reserve, Malaysia. <b><i>Methods</i></b>: We used demographic data derived from a forest that was selectively logged in 1958 as well as those from an unlogged primary forest and constructed population transition matrix models to project the population dynamics. <b><i>Results</i></b>: The dipterocarp species studied showed minor differences in mortality and diameter growth, but there was a large difference in recruitment between logged and unlogged forest; populations in the logged forest had 10 times slower recruitment rates into the smallest size class than those in the primary forest. Population size structures differed between the two forest types but, despite a large difference in the recruitment rates, there were only minor differences in both asymptotic- and matrix-projected population growth rates. <b><i>Conclusions</i></b>: A single selective logging event had only minor impacts on the growth rates of dipterocarp trees in the Pasoh forest. But at the same time it had a large impact on the size structure of the dipterocarp populations through a reduction in recruitment showing that the impacts of selective logging are still seen on dipterocarp population after 50 years.
DOI: 10.6084/m9.figshare.3407338.v1
title: Long-term effects of selective logging on dipterocarp populations in the Pasoh Forest Reserve, Malaysia

description: <b><i>Background</i></b>: Selective logging alters tree growth, mortality and recruitment, and the subsequent population dynamics of trees. However, little information is available on how tree populations reduce local extinction in logged forests. <b><i>Aims</i></b>: We evaluated the effects of selective logging on tree performance and population dynamics of five dominant dipterocarp species in the Pasoh Forest Reserve, Malaysia. <b><i>Methods</i></b>: We used demographic data derived from a forest that was selectively logged in 1958 as well as those from an unlogged primary forest and constructed population transition matrix models to project the population dynamics. <b><i>Results</i></b>: The dipterocarp species studied showed minor differences in mortality and diameter growth, but there was a large difference in recruitment between logged and unlogged forest; populations in the logged forest had 10 times slower recruitment rates into the smallest size class than those in the primary forest. Population size structures differed between the two forest types but, despite a large difference in the recruitment rates, there were only minor differences in both asymptotic- and matrix-projected population growth rates. <b><i>Conclusions</i></b>: A single selective logging event had only minor impacts on the growth rates of dipterocarp trees in the Pasoh forest. But at the same time it had a large impact on the size structure of the dipterocarp populations through a reduction in recruitment showing that the impacts of selective logging are still seen on dipterocarp population after 50 years.