cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25608195.v1
title: Supplementary Material for: Inadvertent intoxication with salbutamol, treated with hemodialysis: a case report and brief review of the literature

description: Introduction 
Salbutamol is a moderately selective beta-2-adrenergic agonist. Various side effects can occur because of beta-1 and beta-2 receptor activation. Due to large volume of distribution, it is not considered dialysable.
Case presentation
A patient with salbutamol intoxication, which developed as a result of a medical error in a patient with sepsis, Down syndrome, and liver cirrhosis, is presented. Initial treatment was partially successful and antibiotic adjustments was made. After his respiratory failure worsened, the patient needed non-invasive ventilation, and previously undiagnosed chronic obstructive pulmonary disease was suspected. He was prescribed intravenous methylprednisolone but accidentally received 5 mg of salbutamol (albuterol), which led to immediate severe arrhythmic tachycardia with hemodynamic collapse. After unsuccessful cardioversion and treatment with landiolol infusion, salvage hemodialysis was commenced to decrease suspectedly highly elevated serum salbutamol levels. After 30 minutes, sinus rhythm with normocardia was observed. After the hemodialysis termination, no rebound tachycardia was noted, but due to severe septic shock the hypotension was ongoing and vasoactive medications were adjusted. However, the measured levels of plasma salbutamol and data from literature do not support the view that hemodialysis was the cause of the described improvement: the total amount of the drug cleared was very small (2.8 % of total dose). 
Conclusion
Our results confirm large volume of salbutamol distribution; the measured levels are within observed therapeutic levels; and the measured half-life time during hemodialysis (3.1 hours) is comparable to observed half-life times in therapeutic settings. The observed favorable clinical benefit, associated with dialysis may be fortuitous, highlighting potential bias towards positive clinical outcomes and unproven (“salvage”) therapies.
DOI: 10.6084/m9.figshare.9918257.v1
title: Knee Pain 1226 subjects.sav

description: Data on knee pain and osteoarthritis among Malaysian older people
DOI: 10.6084/m9.figshare.25444219.v1
title: UK-wide dataset

description: UK-wide dataset outlined in article 'A national-scale sampled temperate fuel moisture database'.
DOI: 10.6084/m9.figshare.25941463.v2
title: Data on arthropod frequencies, traits and R code

description: We compared an indicator for community homogenization, the distance decay slope between four local habitats of increasing land-use intensity, from forests to managed grasslands, to arable lands and to settlements, imbedded in near-natural, agricultural and urban regions. This comparison was based on 12k arthropod species from 400 families, covering an area of 70.500 km<sup>2</sup>. <br>Available data includes arthropod frequency data, trait (body size and mobility) data averaged over families, and the used R code for the project.
DOI: 10.6084/m9.figshare.8852084.v4
title: 10 Years Bug-Fix Dataset (PROMISE'19)

description: Replication Package of the paper "From Reports to Bug-Fix Commits: A 10 Years Dataset of Bug-Fixing Activity from 55 Apache's Open Source Projects"<br><br><b>ABSTRACT:</b><br>Bugs appear in almost any software development. Solving all or at least a large part of them requires a great deal of time, effort, and budget. Software projects typically use issue tracking systems as a way to report and monitor bug-fixing tasks. In recent years, several researchers have been conducting bug tracking analysis to better understand the problem and thus provide means to reduce costs and improve the efficiency of the bug-fixing task. In this paper, we introduce a new dataset composed of more than 70,000 bug-fix reports from 10 years of bug-fixing activity of 55 projects from the Apache Software Foundation, distributed in 9 categories. We have mined this information from Jira issue track system concerning two different perspectives of reports with closed/resolved status: static (the latest version of reports) and dynamic (the changes that have occurred in reports over time). We also extract information from the commits (if they exist) that fix such bugs from their respective version-control system (Git).We also provide a change analysis that occurs in the reports as a way of illustrating and characterizing the proposed dataset. Once the data extraction process is an error-prone nontrivial task, we believe such initiatives like this could be useful to support researchers in further more detailed investigations.<br><br>You can find the full paper at: https://doi.org/10.1145/3345629.3345639<br>If you use this dataset for your research, please reference the following paper:<pre><br>@inproceedings{Vieira:2019:RBC:3345629.3345639, author = {Vieira, Renan and da Silva, Ant\^{o}nio and Rocha, Lincoln and Gomes, Jo\~{a}o Paulo}, title = {From Reports to Bug-Fix Commits: A 10 Years Dataset of Bug-Fixing Activity from 55 Apache's Open Source Projects}, booktitle = {Proceedings of the Fifteenth International Conference on Predictive Models and Data Analytics in Software Engineering}, series = {PROMISE'19}, year = {2019}, isbn = {978-1-4503-7233-6}, location = {Recife, Brazil}, pages = {80--89}, numpages = {10}, url = {http://doi.acm.org/10.1145/3345629.3345639}, doi = {10.1145/3345629.3345639}, acmid = {3345639}, publisher = {ACM}, address = {New York, NY, USA}, keywords = {Bug-Fix Dataset, Mining Software Repositories, Software Traceability}, } <br> </pre>
DOI: 10.6084/m9.figshare.4743781.v1
title: Bleaching probabilities

description: The probability of bleaching occurrence in a given year between 1985 and 2010 was spatially modelled across the world’s warmwater coral reefs at 0.04° X 0.04° latitude-longitude resolution using indicator kriging. Probabilities were not estimated for years in which there were no reports or the modeled semi-variograms failed to converge due to the low number of bleaching observations that year. Please consult the manuscript and the authors before employing this data. The gridded maps are provided in geotiff format.
DOI: 10.6084/m9.figshare.26862175.v1
title: Supplementary Material for: Hyperechoic spots in the renal medulla as a potential indicator of early gouty nephropathy

description: Introduction: To explore the causes and clinical significance of hyperechoic renal medulla observed by ultrasonography in patients with primary gout.
Methods: This study included 2107 patients with primary gout treated in the Gout Clinic of our hospital from 2016 to 2022. The clinical data and biochemical data of these patients were collected and analyzed. According to the presence or absence of punctate hyper-echogenicity in the renal medulla on ultrasound examination, the patients were divided into the hyperechoic medulla (HM) and the normal hypoechoic medulla (NM) groups, and the HM group was further divided into the partial HM (P-HM) and fulfilled-HM (F-HM) subgroups according to the distribution range of hyper-echogenicity.
Results: Among the 2107 patients with primary gout, 380 had hyperechoic renal medulla on renal ultrasound, including 106 patients with F-HM and 274 with P-HM. There were significant differences in the gout duration, urate arthropathies number, serum urate (SU) level, clinical tophi number, blood urea nitrogen (BUN), sCr, and eGFR between the HM and NM groups or between the F-HM and P-HM subgroups (P &lt; 0.05). Multivariate regression analysis showed that the presence of hyperechoic medulla was positively correlated with gout duration, urate arthropathy number, gout attack frequency, SU, and sCr. The number of clinical tophi and sCr were closely related to F-HM.
Conclusion: Ultrasound examination showed that a high medulla echo in patients with gout was often related to renal function damage. P-HM may be a transitory condition between NM and F-HM in patients with gout.
DOI: 10.6084/m9.figshare.5660797.v1
title: Additional file 7 of OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps

description: Gaps in hg38. This file provides the locations of unspecified nucleotides (Nâ s) in the human reference genome hg38. (BED 18 kb)
DOI: 10.25452/figshare.plus.27993248.v1
title: DepMap 24Q4 Public

description: This DepMap Release contains new cell models and data from Whole Genome/Exome Sequencing (Copy Number and Mutation), RNA Sequencing (Expression and Fusions), Genome-wide CRISPR knockout screens. Also included are updated metadata and mapping files for information about cell models and data relationships, respectively. Each release may contain improvements to our pipelines that generate this data so you may notice changes from the last release. For more information, please see README.txt.
DOI: 10.6084/m9.figshare.26064298.v1
title: Figure 2 qPCR.pzfx

description: Fig. 2 Expression analysis of epithelial markers by RT-qPCR of the different cellular models and respiratory mucosa from trachea for comparison. Expression levels were referenced to GAPDH as housekeeping gene and are expressed as ∆c<sub>p</sub> with low values for a strong expression of the marker and high values for a weak expression of the indicated mRNA (see color scale on the right side). Relevant markers for different mucosal cell types as indicated on the left side were analyzed, but also expression of Fc receptors since they are relevant for IgG uptake, distribution, and elimination in airway mucosa. Values are shown as mean. Trachea tissue: n = 6 - 12, N = 2 – 4; TMPC Flask method: n = 9 - 12, N = 3 - 4, TMPC DS: n = 6 - 12, N = 2 – 4; RPMI 2650: n = 4 - 12, N = 1 - 3; CaLu3: n = 4 - 12, N = 1 - 3.
DOI: 10.6084/m9.figshare.25852708.v2
title: Effect of dietary macronutrients and immune challenge on gut microbiota, physiology, and feeding behavior in zebra finches

description: To increase our understanding of how dietary macronutrients affect physiology and gut microbiota and investigate whether feeding behavior is influenced by an immune threat, we conducted two experiments. In the first experiment, we determined if zebra finches (<i>Taeniopygia guttata</i>) exhibit shifts in physiology and gut microbiota when fed diets differing in macronutrient ratios. In our second experiment, we simulated an infection in birds using the bacterial endotoxin lipopolysaccharide (LPS) and quantified feeding behavior in immune challenged and control individuals, as well as birds housed near either a control pair (no immune threat), or birds housed near a pair given an immune challenge with LPS (social cue of heightened infection risk). We also examined whether social cues of infection alter physiological responses relevant to responding to an immune threat, an effect that could be mediated through shifts in feeding behavior. This dataset describes the meta data for the manuscript. The sequences for the manuscript have been uploaded to GenBank (BioProject accession number: PRJNA1112869).
DOI: 10.6084/m9.figshare.27992417.v2
title: CMAB-The World's First National-Scale Multi-Attribute Building Dataset

description: Rapidly acquiring three-dimensional (3D) building data, including geometric attributes like rooftop, height and orientations, as well as indicative attributes like function, quality, and age, is essential for accurate urban analysis, simulations, and policy updates. Current building datasets suffer from incomplete coverage of building multi-attributes. This paper presents the first national-scale Multi-Attribute Building dataset (CMAB) with artificial intelligence, covering 3,667 spatial cities, 31 million buildings, and 23.6 billion m² of rooftops with an F1-Score of 89.93% in OCRNet-based extraction, totaling 363 billion m³ of building stock. We trained bootstrap aggregated XGBoost models with city administrative classifications, incorporating morphology, location, and function features. Using multi-source data, including billions of remote sensing images and 60 million street view images (SVIs), we generated rooftop, height, structure, function, style, age, and quality attributes for each building with machine learning and large multimodal models. Accuracy was validated through model benchmarks, existing similar products, and manual SVI validation, mostly above 80%. Our dataset and results are crucial for global SDGs and urban planning.Data records: A building dataset with a total rooftop area of 23.6 billion square meters in 3,667 natural cities in China, including the attribute of building rooftop, height, structure, function, age, style, colour and quality, as well as the code files used to calculate these data. The deep learning models used are OCRNet, XGBoost, fine-tuned CLIP and Yolo-v8.Reference Format：Zhang, Y., Zhao, H. & Long, Y. CMAB: A Multi-Attribute Building Dataset of China. Sci Data 12, 430 (2025). https://doi.org/10.1038/s41597-025-04730-5.
DOI: 10.6084/m9.figshare.28503410.v1
title: 18S & 28S Sequences

description: This study evaluates the performance of 18S and 28S rRNA amplicon sequencing in clinical fecal samples from Jilin Province, China.
DOI: 10.6084/m9.figshare.19111391.v2
title: Data File for “The Determinants of Home Schooling: Evidence from Wisconsin”

description: Joshua Hall, “The Determinants of Home Schooling: Evidence from Wisconsin,” 2019 MCRSA Conference Proceedings, forthcoming.<br>
DOI: 10.6084/m9.figshare.28768487.v1
title: <b>Exploring the Neuroprotective Mechanisms of Jiawei Suanzaoren Decoction in Depression: Insights from Network Pharmacology and Molecular Docking</b>

description: Raw bioinformatics data
DOI: 10.6084/m9.figshare.4270082.v1
title: Supplementary Material for: Gene Expression Profiling and Functional Characterization of Macrophages in Response to Circulatory Microparticles Produced during Trypanosoma cruzi Infection and Chagas Disease

description: <b><i>Background:</i></b> Chronic inflammation and oxidative stress are hallmarks of chagasic cardiomyopathy (CCM). In this study, we determined if microparticles (MPs) generated during <i>Trypanosoma cruzi </i>(<i>Tc</i>) infection carry the host's signature of the inflammatory/oxidative state and provide information regarding the progression of clinical disease. <b><i>Methods:</i></b> MPs were harvested from supernatants of human peripheral blood mononuclear cells in vitro incubated with <i>Tc </i>(control: LPS treated), plasma of seropositive humans with a clinically asymptomatic (CA) or symptomatic (CS) disease state (vs. normal/healthy [NH] controls), and plasma of mice immunized with a protective vaccine before challenge infection (control: unvaccinated/infected). Macrophages (mφs) were incubated with MPs, and we probed the gene expression profile using the inflammatory signaling cascade and cytokine/chemokine arrays, phenotypic markers of mφ activation by flow cytometry, cytokine profile by means of an ELISA and Bioplex assay, and oxidative/nitrosative stress and mitotoxicity by means of colorimetric and fluorometric assays. <b><i>Results:</i></b><i>Tc</i>- and LPS-induced MPs stimulated proliferation, inflammatory gene expression profile, and nitric oxide (<b>∙</b>NO) release in human THP-1 mφs. LPS-MPs were more immunostimulatory than <i>Tc</i>-MPs. Endothelial cells, T lymphocytes, and mφs were the major source of MPs shed in the plasma of chagasic humans and experimentally infected mice. The CS and CA (vs. NH) MPs elicited &gt;2-fold increase in NO and mitochondrial oxidative stress in THP-1 mφs; however, CS (vs. CA) MPs elicited a more pronounced and disease-state-specific inflammatory gene expression profile (IKBKB, NR3C1, and TIRAP vs. CCR4, EGR2, and CCL3), cytokine release (IL-2 + IFN-γ &gt; GCSF), and surface markers of mφ activation (CD14 and CD16). The circulatory MPs of nonvaccinated/infected mice induced 7.5-fold and 40% increases in <b>∙</b>NO and IFN-γ production, respectively, while these responses were abolished when RAW264.7 mφs were incubated with circulatory MPs of vaccinated/infected mice. <b><i>Conclusion:</i></b> Circulating MPs reflect in vivo levels of an oxidative, nitrosative, and inflammatory state, and have potential utility in evaluating disease severity and the efficacy of vaccines and drug therapies against CCM.
DOI: 10.21227/zg17-wd69
title: "Ultrasonic Transit Time Measurement Based on Frequency Doubling Technique"

description: "Ultrasonic gas flowmeters are widely adopted in industrial applications due to their advantageous features, such as zero pressure loss and easy installation. However, the conventional threshold detection method, despite its real-time performance, suffers from degraded accuracy caused by circuit and pipeline noise, which introduces fluctuations in echo signal amplitude and phase. This paper theoretically demonstrates that doubling the ultrasonic signal frequency steepens the rising edge slope of the echo signal, reducing the time interval during which random noise affects comparator output. Experimental results validate that the proposed technique achieves a 29.23% reduction in the mean measurement error of transit time compared to traditional methods, particularly showing pronounced improvements in low-flow scenarios."
DOI: 10.6084/m9.figshare.27292989.v1
title: GynQin.OGS.gff3

description: gff file of the grassland caterpillar Gynaephora qinghaiensis official gene set (OGS)
DOI: 10.6084/m9.figshare.27642936.v1
title: Data from: Substantial role of under-ice limnological processes in diatom dynamics in the alpine lakes of the Chinese Loess Plateau

description: Recent climate warming has resulted in the reduction of lake ice cover and significant changes in phytoplankton communities, but due to the traditional view of low production under lake ice in winter as well as the logistical challenges of winter conditions to field sampling, the influence of under-ice limnological processes on winter diatom dynamics is rarely directly examined and thus remains unclear. Here, lake pelagic diatoms were monitored covering both the open-water season and two ice-covered winter seasons in three alpine lakes on the Chinese Loess Plateau to track diatom succession dynamics and assess the potential influences of under-ice light and nutrient availability on diatom community. The results show clearly that diatom compositional changes during the open-water season in all the lakes were simply linked with lake physical mixing/stratification regimes, while diatom community composition was not consistent between the two winter seasons in each lake under the combined influence of changing under-ice nutrient and light conditions. In deep Lake Gonghai, total phosphorus (TP) explained equally the changes in winter diatom community with temperature, ice cover and associated light availability; in shallow Lake Pipahai, total nitrogen (TN) functioned as the major nutrient factor but was less important than light penetration through the ice; and in Lake Mayinghai, dissolved silica (DSi) outweighed the light effect of winter temperature and ice cover. Despite differing relative importance of nutrient factors between the different morphological types of lakes, winter diatom community changes in each lake were significantly linked with temperature, ice cover and associated changes in under-ice light availability. This study provides a detailed picture that winter temperature and under-ice limnological processes play a substantial role in diatom community dynamics in the alpine lakes of the Chinese Loess Plateau, and improves understanding of limnological and ecological processes under ice and their driving mechanisms.
DOI: 10.6084/m9.figshare.7837964.v2
title: Supplementary Material 5 The expression changes of the 84 new transcripts in the two stages (unfertilized egg and prim-5).xlsx

description: The expression changes of the 84 new transcripts in the two stages (unfertilized egg and prim-5).
DOI: 10.6084/m9.figshare.28656674.v3
title: Data of soil physicochemical properties of six typical terrestrial ecosystems of China.xlsx

description: Soil physicochemical properties (pH, EC, SOC, TN, C/N ratio) of six typical terrestrial ecosystems of China which are located on the east and west sides of Hu-Line were the areas of our scientific focus: i) the karst area of southwestern China (KS), ii) the agro–pastoral ecotone of southwestern China (AS), iii) the Qinghai-Tibet Plateau (QT), iv) the Loess Plateau (LP), v) the forest–grassland ecotone (FG), and vi) the deserts of Hexi Corridors (HC), all account for an total area of approximately 2.61×10<sup>6</sup> km<sup>2</sup>
DOI: 10.6084/m9.figshare.28827893.v1
title: Supplementary Material for: Artificial Intelligence-Driven Quantification of Tumor-Stroma Ratio and Fibroblasts Enables Precise Classification of Stroma Quality and Quantity in Predicting Colorectal Cancer Recurrence

description: The tumor microenvironment (TME) significantly influences the progression and prognosis of colorectal cancer (CRC). Key components, including the tumor-stroma ratio (TSR) and cancer-associated fibroblasts (CAFs), have been recognized as important prognostic markers in CRC. However, the conventional assessment of TSR and CAF density is often subjective and labor-intensive, limiting its clinical application. In this study, we employed an artificial intelligence (AI)-powered whole slide image (WSI) analyzer, Lunit SCOPE IO, to objectively quantify TSR and CAF density in stage II and III CRC specimens from 207 treatment-naïve patients. Our analysis revealed that both TSR (log-rank p&lt;0.0001) and CAF (log-rank p=0.017) density were independently associated with disease-free survival (DFS), providing superior prognostic accuracy compared to conventional risk factors. Notably, incorporating TSR and CAF density with traditional high-risk criteria allowed for the reclassification of additional patients as high-risk, significantly improving DFS prediction and reducing false-negative rates. These findings highlight the potential of integrating AI-based histopathological analysis into routine clinical practice to enhance diagnostic precision, improve risk stratification, and ultimately optimize patient management in CRC.
DOI: 10.25573/data.25726890.v1
title: [Dataset:] BCI 50 ha Forest Dynamics Plot - 1990 Census

description: The q90spp zipped files contain compressed text files of the 1982-1990 census data for all stems in the BCI 50 ha plot, separated into individual files for each species. The other zipped files contain the files generated from the 1990 census, with measurements of: old trees, new recruits, multiple stems, and buttressed trees. All trees &gt;=10 mm dbh were tagged, measured, mapped and identified to species.
DOI: 10.6084/m9.figshare.20913373.v1
title: Operacionalización Comunicados AMIC 2022

description: Ejemplo de la operalización utilizada para la investigación “Mensajes Corporativos Responsables en situaciones de crisis. Estudio de Caso: Citibanamex” presentada por Hilda Gabriela Hernández Flores, Paola Eunice Rivera Salas y Eva Samantha Vázquez en el marco del el 33 Encuentro Nacional de AMIC.
DOI: 10.6084/m9.figshare.24416386.v1
title: R code and modeling data

description: R language code and modeling data, the first file includes the specific code of our GADA method for calculation, and the second file is the specific data used for modeling.
DOI: 10.6084/m9.figshare.28830464.v1
title: Taxonomical Revision of Scolecostigmina chibaensis: Matrix of DNA sequcences of Kirschsteiniothelia species

description: Nakashima et al. (2025). Taxonomical Revision of Scolecostigmina chibaensis. Plant and Fungal Research.
DOI: 10.6084/m9.figshare.25911727.v1
title: Datasets

description: Datasets used in ms "Brooding duration does not depend on cat predation risk but is related to weather and hatching period in the wandering albatross (<i>Diomedea exulans</i>)"