cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20033012.v1
title: Characterization of Canine CD34+/CD45 diminished Cells by Colony-forming Unit Assay and Transcriptome Analysis

description: In veterinary medicine, peripheral blood stem cells have been successfully used for haematopoietic stem cell transplantation, especially in cases of canine B-cell and T-cell lymphoma. However, the cell surface antigens and gene expression profiles of canine Haematopoietic stem and progenitor cells (HSPCs) are yet to be elucidated. The goals of this project are attempted to characterize the canine HSPCs using colony-forming unit assay and RNA sequencing analysis. We compared the haematopoietic colony forming abilities and HSPC-specific cell surface antigen gene expressions among whole viable cells (control), CD34+ cells, and CD34+/CD45dim cells. We believe that our study makes a significant contribution to the literature because our observations highlight the potential of the CD34+/CD45dim cells to be used as markers for studying canine haematopoietic stem cells. Further, we believe that this paper will help to exclusively identify the canine HSPCs, which, in turn, will help to develop treatment options for canine patients suffering from haematopoietic tumour diseases.
DOI: 10.7284/127638
title: Multiplexed data collected during research cruise HRS1702KB using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127639
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1702KB using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127644
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1702KB using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127630
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1702KB using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127631
title: INS (Inertial Navigation System) data collected during research cruise HRS1702KB using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127633
title: INS (Inertial Navigation System) data collected during research cruise HRS1704CR using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127641
title: INS (Inertial Navigation System) data collected during research cruise HRS1705NK using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127658
title: INS (Inertial Navigation System) data collected during research cruise HRS1709GL using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142659
title: Multiplexed data collected during research cruise HRS1713 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142660
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1713 using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142657
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1713 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142658
title: INS (Inertial Navigation System) data collected during research cruise HRS1713 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/142662
title: Singlebeam Echosounder data collected during research cruise HRS1713 using a Knudsen 320B/R instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127668
title: INS (Inertial Navigation System) data collected during research cruise HRS1714NK using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132220
title: Multiplexed data collected during research cruise HRS1805 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132221
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1805 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132218
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1805 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132219
title: INS (Inertial Navigation System) data collected during research cruise HRS1805 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132222
title: Singlebeam Echosounder data collected during research cruise HRS1805 using a Knudsen 3260 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132249
title: Multiplexed data collected during research cruise HRS1807 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132250
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1807 using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132247
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1807 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132248
title: INS (Inertial Navigation System) data collected during research cruise HRS1807 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.13030898.v1
title: RAW DATA

description: Raw data obtiened from analysis using weka segmentation from around 7500 pictures obteined with different stainings Live/Dead Cell Imaging Kit , Autophagy Cell Imaging Kit, Caspase-3 and -7 Cell Imaging Kit, and Propidium iodide <strong>.</strong>
DOI: 10.7284/132253
title: Multiplexed data collected during research cruise HRS1811 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132254
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1811 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132251
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1811 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132252
title: INS (Inertial Navigation System) data collected during research cruise HRS1811 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/132255
title: Singlebeam Echosounder data collected during research cruise HRS1811 using a Knudsen 3260 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/146499
title: Multiplexed data collected during research cruise HRS1908 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/146497
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1908 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/146498
title: INS (Inertial Navigation System) data collected during research cruise HRS1908 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20499165
title: pyrrhura_chapmani_decontaminated_FSCR.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.20499165.v1
title: pyrrhura_chapmani_decontaminated_FSCR.fasta.gz

description: .......
DOI: 10.7284/134489
title: Multiplexed data collected during research cruise HRS1909 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134487
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1909 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134488
title: INS (Inertial Navigation System) data collected during research cruise HRS1909 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134492
title: Multiplexed data collected during research cruise HRS1910 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134493
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1910 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134490
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1910 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134491
title: INS (Inertial Navigation System) data collected during research cruise HRS1910 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134496
title: Multiplexed data collected during research cruise HRS1911 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134497
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise HRS1911 using a Hawaii UHDAS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134494
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1911 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134495
title: INS (Inertial Navigation System) data collected during research cruise HRS1911 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134500
title: Multiplexed data collected during research cruise HRS1912 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134498
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1912 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134499
title: INS (Inertial Navigation System) data collected during research cruise HRS1912 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134517
title: Multiplexed data collected during research cruise HRS1913 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134518
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1913 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134515
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1913 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134516
title: INS (Inertial Navigation System) data collected during research cruise HRS1913 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134519
title: Singlebeam Echosounder data collected during research cruise HRS1913 using a Knudsen 3260 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134522
title: Multiplexed data collected during research cruise HRS1914 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134523
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1914 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134520
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1914 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134521
title: INS (Inertial Navigation System) data collected during research cruise HRS1914 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134526
title: Multiplexed data collected during research cruise HRS1915 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134527
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise HRS1915 using a SeaBird SBE-911+ instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134524
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS1915 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134525
title: INS (Inertial Navigation System) data collected during research cruise HRS1915 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.6650763
title: Genomes of tropical rust fungi (Araucariomyces, Coleosporium, Hamaspora, Puccinia paululla, Skierka, and Sphaerophragmium)

description: Hi, Everyone is welcome to use the assemblies shared here. The catch is they are not perfect. The DNA was extracted from environmental samples and has contaminant contigs from hosts, bacteria and endophytic or saprophytic fungi. I've run Kraken2 to remove most host and bacterial contigs, but there are no doubt some remaining. The genomes were sequenced in the same run and the mitochondrion of <em>Sphaerophragmium</em> is present in all genomes. The taxa are selected for their evolutionary relationships in the Pucciniales (see Aime and McTaggart 2021, A familial rank classification of rust fungi, with notes on genera). More about each taxon is available below.<br> <em>Araucariomyces fragiforme</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/aecidiumfragiforme.html<br> <em>Coleosporium plumeriae</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/coleosporiumplumeriae.html<br> <em>Hamaspora acutissima</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/hamasporaacutissima.html<br> <em>Puccinia paullula</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/pucciniapaullula.html<br> <em>Skierka agallocha</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/skierkaagallocha.html<br> <em>Sphaerophragmium acaciae</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/sphaerophragmiumacaciae.html The raw sequencing data are available either in this Google Drive folder https://drive.google.com/drive/folders/1nDRWYLEO80R6CCxdnMzkaFY3DqUKn6Vo?usp=sharing, or contact me (alistair.mctaggart@gmail.com) if you need another option. If you have the fortitude to clean up these genomes, let's get them on to GenBank. I'd be delighted to collaborate on anything and currently am working on mating genes and mitochondria. All genomes were assembled with the below commands for Supernova. The assembly reports have also been provided. supernova run --id RustName --accept-extreme-coverage --localmem 350 --fastqs=$PATH/reads --maxreads=2140000000<br> supernova mkoutput --style=megabubbles --asmdir=$PATH/RustName/outs/assembly --outprefix=RustName_mkoutput There are more raw sequencing data for <em>Uromycladium</em> and <em>Ravenelia</em>, but nothing assembled from these yet. You're welcome to use them if you need. You could do me a solid and cite: McTaggart et al. (2022) Sexual reproduction is the null hypothesis in life cycles of rust fungi. PLoS Pathogens 18(5):e1010439. DOI: 10.1371/journal.ppat.1010439. We released the MAT loci based on the genomes in there, more work on RNAi pathway genes coming that can be cited as an alternative to reference these assemblies when published. Enjoy and keep smiling,<br> Alistair
DOI: 10.5281/zenodo.6650762
title: Genomes of tropical rust fungi (Araucariomyces, Coleosporium, Hamaspora, Puccinia paululla, Skierka, and Sphaerophragmium)

description: Hi, Everyone is welcome to use the assemblies shared here. The catch is they are not perfect. The DNA was extracted from environmental samples and has contaminant contigs from hosts, bacteria and endophytic or saprophytic fungi. I've run Kraken2 to remove most host and bacterial contigs, but there are no doubt some remaining. The genomes were sequenced in the same run and the mitochondrion of <em>Sphaerophragmium</em> is present in all genomes. The taxa are selected for their evolutionary relationships in the Pucciniales (see Aime and McTaggart 2021, A familial rank classification of rust fungi, with notes on genera). More about each taxon is available below.<br> <em>Araucariomyces fragiforme</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/aecidiumfragiforme.html<br> <em>Coleosporium plumeriae</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/coleosporiumplumeriae.html<br> <em>Hamaspora acutissima</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/hamasporaacutissima.html<br> <em>Puccinia paullula</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/pucciniapaullula.html<br> <em>Skierka agallocha</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/skierkaagallocha.html<br> <em>Sphaerophragmium acaciae</em>: https://collections.daff.qld.gov.au/web/key/rustfungi/Media/Html/sphaerophragmiumacaciae.html The raw sequencing data are available either in this Google Drive folder https://drive.google.com/drive/folders/1nDRWYLEO80R6CCxdnMzkaFY3DqUKn6Vo?usp=sharing, or contact me (alistair.mctaggart@gmail.com) if you need another option. If you have the fortitude to clean up these genomes, let's get them on to GenBank. I'd be delighted to collaborate on anything and currently am working on mating genes and mitochondria. All genomes were assembled with the below commands for Supernova. The assembly reports have also been provided. supernova run --id RustName --accept-extreme-coverage --localmem 350 --fastqs=$PATH/reads --maxreads=2140000000<br> supernova mkoutput --style=megabubbles --asmdir=$PATH/RustName/outs/assembly --outprefix=RustName_mkoutput There are more raw sequencing data for <em>Uromycladium</em> and <em>Ravenelia</em>, but nothing assembled from these yet. You're welcome to use them if you need. You could do me a solid and cite: McTaggart et al. (2022) Sexual reproduction is the null hypothesis in life cycles of rust fungi. PLoS Pathogens 18(5):e1010439. DOI: 10.1371/journal.ppat.1010439. We released the MAT loci based on the genomes in there, more work on RNAi pathway genes coming that can be cited as an alternative to reference these assemblies when published. Enjoy and keep smiling,<br> Alistair
DOI: 10.7284/128238
title: Multibeam Echosounder data collected during research cruise KM1701 using a Kongsberg EM122 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126968
title: INS (Inertial Navigation System) data collected during research cruise KM1705 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/126965
title: TSG (Thermosalinograph) data collected during research cruise KM1705 using a SeaBird SBE-45 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127002
title: INS (Inertial Navigation System) data collected during research cruise KM1709 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127014
title: INS (Inertial Navigation System) data collected during research cruise KM1710 using a Applanix POS/MV-320 V4 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/127011
title: TSG (Thermosalinograph) data collected during research cruise KM1710 using a SeaBird SBE-45 instrument system onboard the platform RV Kilo Moana

description: Original (unprocessed) data collected during a Field_expedition