cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-xu3-gcat
title: CHECK (Cohort Hip & Cohort Knee) data of baseline and 9- 10 years follow-up
title: Data files of T0, T9 and T10

description: &lt;p&gt;The Cohort Hip & Cohort Knee (CHECK) is a population-based observational multicenter cohort study of 1002 individuals with early symptomatic osteoarthritis (OA) of knee and/or hip in the Netherlands. The participants were followed for 10 years. The study evaluated clinical, radiographic and biochemical variables in order to establish the course, prognosis and underlying mechanisms of early symptomatic osteoarthritis. The Dutch Artritis Foundation initiated and funded this inception cohort.&lt;/p&gt;&lt;p&gt;This dataset covers the data collection of baseline and 9-10 years follow-up: T9 and T10 All data files include the variable 'Subject identification number.’ Included is a Kellgren-Lawrence radiographic classification covering T0, T2, T5, T8 and T10. Also X-rays of hips and knees of baseline and 10 year follow-up visit are available. More information on the variables can be found in the documentation.&lt;/p&gt;&lt;p&gt;See relations for other CHECK datasets and for the overview 'Thematic collection: CHECK (Cohort Hip & Cohort Knee)'.&lt;/p&gt;
description: Date Submitted: 2015-12-24
description: &lt;p&gt;2019-12-20: a new data file on X-Ray data 'Rontgen_opT10_20191118' was added to the dataset.&lt;/p&gt;&lt;p&gt;2017-10-04: A data file on X-Ray ratings has been added and the variable guide is replaced by a new version (6) with information on this data file. Please note the variable names start with 'RontgT10_' in the data file.&lt;/p&gt;&lt;p&gt;2017-07-12: Due to an error a data file has been replaced. CHECK_T0_DANS_ENG_20151211.sav is now replaced by CHECK_T0_DANS_ENG_20161128.sav.&lt;/p&gt;&lt;p&gt;---&lt;/p&gt;&lt;p&gt;The informed consent statements of the participants are stored at the participating hospitals.&lt;/p&gt;&lt;p&gt;The .dta (STATA) and .por (SPSS) files are conversions of the original .sav (SPSS) files.&lt;/p&gt;
description: In order to link subject identification numbers to the baseline images, please refer to the X-ray data files T0.zip to T0-24.zip from the dataset "CHECK (Cohort Hip & Cohort Knee) data of baseline to 5 years follow-up" at https://doi.org/10.17026/dans-xex-hzww
DOI: 10.17026/dans-22u-f8vd
title: AmsterdamUMCdb v1.0.2

description: &lt;p&gt;This is the first freely accessible intensive care database from within the European Union. It contains de-identified health data related to tens of thousands of intensive care unit admissions, including demographics, vital signs, laboratory tests and medications.&lt;/p&gt;&lt;p&gt;Since 29-02-2020 this dataset is in version: 1.0.2.&lt;/p&gt;

&lt;p&gt;
&lt;b&gt;IMPORTANT: before requesting access here, you need to fill out and sign the access request and end use license agreement form and fullfull the requirements mentioned on that form. For details see https://github.com/AmsterdamUMC/AmsterdamUMCdb and https://www.amsterdammedicaldatascience.nl/
&lt;/b&gt;
&lt;/p&gt;
DOI: 10.17026/dans-xds-pkgj
title: Distinguishing between hazardous flooding and non-hazardous agronomic inundation in irrigated rice fields: A case study from West Java

description: &lt;p&gt;Cropping schedules in irrigated rice fields are often affected by the flooding. All rice growing stages, fallow, transplanting, harvesting, may occur in irrigated rice fields with complex cropping patterns. This research aims to distinguish between rice fields with agronomic inundation and rice fields with flooding in irrigated rice fields in northern districts of West Java using time-series MODIS imageries. The former is rice fields with normal cropping practices, while the latter is rice fields suffering disruptions from the adverse event. It is assumed that flooding delays the planting dates, leading to other adverse events in irrigated rice fields. The paper argues that the direct use of a particular vegetation index (e.g., EVI ≤ 0.1) may not sufficient to detect hazardous flooding in irrigated rice fields with complex cropping patterns. The paper proposed the incorporation of duration of land preparation and transplanting activities to EVI ≤ 0.1 distinguish between hazardous flooding and non-hazardous agronomic inundation in irrigated rice fields.&lt;/p&gt;
description: &lt;p&gt;.mif & .mid file conversions added by DANS&lt;/p&gt;
DOI: 10.17026/dans-x3z-6que
title: A hierarchically adaptable spatial regression model to link aggregated health data and environmental data

description: &lt;p&gt;Health data and environmental data are commonly collected at different levels of aggregation. A persistent challenge of using a spatial regression model to link these data is that their associations can vary as a function of aggregation. This results into ecological fallacy if association at one aggregation level is used for inferencing at another level. We address this challenge by presenting a hierarchically adaptable spatial regression model. In essence, the model extends the spatially varying coefficient model to allow the response to be count data at larger aggregation levels than that of the covariates. A Bayesian hierarchical approach is used for inferencing the model parameters. Robust inference and optimal prediction over geographical space and at different spatial aggregation levels are studied by simulated data sets. The spatial associations at different spatial supports are largely different, but can be efficiently inferred when prior knowledge of the associations is available. The model is applied to study hand, foot and mouth disease (HFMD) in Da Nang city, Viet Nam. Decrease in vegetated areas corresponds with elevated HFMD risks. A study to the identifiability of the parameters shows a strong need for a highly informative prior distribution. We conclude that the model is robust to the underlying aggregation levels of the calibrating data for association inference and it is ready for application in health geography.&lt;/p&gt;
DOI: 10.17026/dans-x7w-e8hf
title: FEM growth and yield data monocultures - Other species (revised version)

description: &lt;p&gt;In this version 13 new plots of White elder and 13 new plots of Sitka spruce were added, both from the collection of the former Stichting Industriehout.&lt;br&gt;This database is part of the FEM growth and yield database, a collection of growth and yield data from even-aged monocultures.&lt;/p&gt;
DOI: 10.17026/dans-zf9-4882
title: Monitoring the dynamics of surface water fraction from MODIS time series in a Mediterranean environment

description: &lt;p&gt;This research estimated the surface water fraction from MODIS 16-day 500 m Bidirectional Reflectance Distribution Function (BRDF) corrected surface reflectance image composites. The spatial extent of two Landsat tiles over Spain were selected as test areas. We obtained a 500 m reference dataset on surface water fraction by spatially aggregating 30 m binary water masks derived from the C-version of Function of Mask (CFmask), which themselves were evaluated against high-resolution Google Earth imagery. Twelve regression tree models were developed with two approaches, Random Forest and Cubist, using spectral metrics derived from MODIS data and topographic parameters generated from a 30 m spatial resolution digital elevation model. Results showed that accuracies were higher when we included annual summary statistics of the spectral metrics as predictor variables. Models trained on a single Landsat tile were ineffective in mapping surface water in the other tile, but global models trained with environmental conditions from both tiles can provide accurate results for both study areas. We achieved the highest accuracy with Cubist global model (R2 = 0.91, RMSE = 11.05%, MAE = 7.67%). Our approach is promising for monitoring surface water fraction at high frequency time intervals over much larger regions provided that training data are collected across the spatial domain for which the model will be applied.&lt;/p&gt;
description: Date: 2018
DOI: 10.17026/dans-2x7-8sr4
title: FEM growth and yield data monocultures - Norway spruce (revised version)

description: &lt;p&gt;In this revised edition, 28 test plots were added from the former Stichting Industriehout. This database is part of the FEM growth and yield database, a collection of growth and yield data from even-aged monocultures.&lt;/p&gt;
DOI: 10.17026/dans-zez-ykrc
title: Methanol based elongation of propionate and propionate and acetate in continuous and batch mixed culture systems

description: &lt;p&gt;Continuous methanol based chain elongation of propionate to n-valerate was performed in a mixed culture reactor. Additionally, the study shows simultaneous methanol based elongation of propionate and acetate to respectively n-valerate and iso/n-butyrate in a continuous mixed culture reactor. A range of mixed culture batch experiments was performed with methanol and propionate and the initial pH ranging from 5 to 7.5 (steps of 0.5)&lt;/p&gt;
DOI: 10.17026/dans-2a6-z6aq
title: de LIVEstudie
title: een actie-onderzoek naar sociotherapeutische leefmilieus in verpleeghuizen

description: &lt;p&gt;SocioTherapeutische Leefmilieus (STLs) zijn leefomgevingen die speciaal zijn afgestemd op behoeften en zorgvragen van groepen bewoners in een verpleeghuis. In verschillende verpleeghuizen in Nederland zijn inmiddels STL’s geïmplementeerd. Omdat STLs practice based zijn, is er een actie-onderzoek met het acronym LIVE uitgevoerd naar de theoretische onderbouwing en verbetermogelijkheden van deze werkwijze. Er waren drie sub-studies: een literatuuronderzoek, een procesevaluatie en een haalbaarheidsstudie voor een eventuele effectstudie.&lt;br&gt;In de eerste procesevaluatie is de kwaliteit van de methodiek STL’s beoordeeld, gebruikte implementatiestrategieën en randvoorwaardelijke factoren. In de tweede procesevaluatie stond de evaluatie centraal van de aangepaste aanpak, nadat de actie-onderzoek fasen OBSERVATIE, REFLECTIE, PLAN en ACTIE waren doorlopen. Voor de eerste procesevaluatie zijn gegevens verzameld met a) observaties; b) semi-gestructureerde interviews; en c) focusgroepen. In de tweede procesevaluatie zijn gegevens verzameld door middel van interviews. Het actieonderzoek is uitgevoerd bij twee zorgorganisatie, waar STL’s respectievelijk 11 en ruim 2 jaar waren geïmplementeerd bij aanvang van de studie. Geïncludeerd in de procesevaluatie zijn 11 STL’s, 34 bewoners/mantelzorgers en tevens 34 medewerkers.&lt;br&gt;In de haalbaarheidsstudie is onderzocht hoe een eventuele studie naar de effecten van STL’s op bewoners en zorgmedewerkers opgezet zou kunnen worden. Er zijn zeven uitkomstmaten geselecteerd.&lt;/p&gt;&lt;p&gt;Voor bewoners:&lt;br&gt;Ernst van dementie: GDS-FAST (proxy);&lt;br&gt;Zorgbehoefte van persoon met dementie in een verpleeghuis: CANE (proxy);&lt;br&gt;aanwezigheid van psychiatrische symptomen: NPI-Q (proxy);&lt;br&gt;psychisch welbevinden, sociaal functioneren en Kwaliteit van Leven: TOPICS-MDS 2017 (zelfrapportage, waar nodig proxy);&lt;br&gt;Informatie multimorbiditeit en functioneren (ADL): TOPICS-MDS 2017 (proxy);&lt;br&gt;Demografische gegevens: TOPICS-MDS 2017 (proxy).&lt;/p&gt;&lt;p&gt;Voor medewerkers: Gevoel van competentie onder zorgmedewerkers in de dementiezorg (SCID).&lt;br&gt;De praktische toepasbaarheid van de vragenlijsten is vervolgens beoordeeld door het uitvoeren van een eenmalige meting in 11 STLs verdeeld over de twee deelnemende zorgorganisaties. 18 bewoners en 37 medewerkers zijn geïncludeerd.&lt;/p&gt;
description: &lt;p&gt;een actie-onderzoek naar sociotherapeutische leefmilieus in verpleeghuizen&lt;/p&gt;
DOI: 10.17026/dans-zt2-66a4
title: Interfacial Thermodynamics of Coexisting Aqueous Polymer Solutions

description: &lt;p&gt;This dataset belongs to the PhD thesis of Mark Vis, "Interfacial Thermodynamics of Coexisting Aqueous Polymer Solutions" (Utrecht University, 2015). This dataset contains supplementary movies to Chapter 5. A PDF copy of the PhD thesis is included and can also be accessed through Utrecht University’s library, http://dspace.library.uu.nl/handle/1874/323671.&lt;/p&gt;&lt;p&gt;Abstract of Chapter 5:&lt;br&gt;Ultrathin plate-like colloidal particles are effective candidates for Pickering stabilization of water-in-water emulsions, a stabilization that is complicated by the thickness and ultralow tension of the water–water interface. Here we present experiments and theory for the effect of gibbsite nanoplates on phase-separated aqueous solutions of biopolymers dextran and nongelling fish gelatin. Plate-like particles have the advantage of blocking much of the interface while simultaneously having a low mass. Additionally, the amount of blocked interface is practically independent of the equilibrium angle θ at which the water–water interface contacts the nanoplates, as opposed to the wetting of spheres. As a result, the adsorption of nanoplates is stronger than for spheres with the same maximal cross section, except at θ = 90°.&lt;/p&gt;
description: Date Submitted: 2015-07-07
description: &lt;p&gt;The naming of the data files changed on february the 9th, 2016. 'Movie_S' has been replaced with 'Movie_H'.&lt;/p&gt;
DOI: 10.17026/dans-zuf-ft56
title: Computer use 2002-2008

description: &lt;p&gt;During a longitudinal study at the Erasmus MC - University Medical Center, more than 1000 employees were followed using registration software on their computers. The computer users performed a variety of jobs (secretaries, researchers, managers, medical personnel, professors, etc), using a variety of software. Participants performed their daily work while the software logged mouse cursor changes (10 Hz), keystrokes, mouse clicks and mouse scroll events, whenever these events occurred. The database consists of 1296 folders (95919 files) containing data from individual computer users.&lt;br&gt;The dataset can be used to perfom your own analysis or you can collaborate with the Erasmus MC Kineos Research Group to perform certain types of analysis. Possible analyses are detailed risk assessment regarding computer use and health complaints or analysis of pause, mouse and keyboard use in subgroups of computer users with specific characteristcs (such as job function, age, gender etc, etc).&lt;br&gt;&lt;br&gt;Due to the size of this main dataset (almost 100.000 files), the files cannot be accessed online but will be made available in another way after additional contact with DANS and/or the depositor of the data.&lt;br&gt;&lt;br&gt;In a separate additional database data are available on the characteristics of the computer users (such as job type, occurrence of RSI complaints, handedness, software usage). These data were collected using questionnaires sent to the participants of the study. This database will contain the same personal ID so both databases can be linked.&lt;br&gt;This file can be accessed online.&lt;/p&gt;
description: &lt;p&gt;Due to the size of this main dataset (almost 100.000 files), the files cannot be accessed online but will be made available in another way after additional contact with DANS and/or the depositor of the data.&lt;/p&gt;
DOI: 10.15468/dl.5434xs
title: Occurrence Download

description: A dataset containing 4088 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stilpnia peruviana (Desmarest, 1806)"
 ]
}

 The dataset includes 4088 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068903-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xpt-a2bd
title: Data from: Weekly defoliation controls but does not kill broad-leaved dock (Rumex obtusifolius L.)

description: &lt;p&gt;Data from three experiments in which the leaves of the grassland weed Rumex obtusifolius L. (broad-leaved dock) were repeatedly removed, and in which regrowth was monitored.&lt;/p&gt;
DOI: 10.17026/dans-2xy-eeq2
title: Support for what? An assessment of project proposals to the Capacity Building Initiative for Transparency (CBIT)
title: TRANSGOV Database of CBIT projects

description: &lt;p&gt;The Capacity-building Initiative for Transparency (CBIT) is a trust fund managed by the Global Environmental Facility providing support to developing countries. The main aim of the initiative is to build the capacities of developing countries to participate in reporting and review mechanisms under the Paris Agreement. Climate reporting under the Paris Agreement consists of four areas: reporting on greenhouse gas (GHG) inventories, mitigation actions, climate impacts and adaptation actions, and financial, technology development and transfer and capacity-building support provided, needed and received. The CBIT allows for funds to be requested for each of these areas of reporting. The primary aim of this database is to assess for which of these areas of reporting funds have been requested in practice.&lt;/p&gt;
description: Date Submitted: 2022-07-14
DOI: 10.17026/dans-z56-fz75
title: Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) – Behaviour scores

description: &lt;p&gt;Symptom scores of ADHD and ODD for 79 children included in the Biomarker Research in ADHD: the Impact of Nutrition (BRAIN) study, an open-label trial during which children with ADHD followed a few-foods diet (FFD). Sampling was done before the FFD (t1) and after 5 weeks of FFD (t2).&lt;/p&gt;
description: Date Submitted: 2020-02-17
DOI: 10.17026/dans-zku-4cgy
title: Antiviral Innate Immune Response Interferes with the Formation of Replication-Associated Membrane Structures Induced by a +RNA Virus

description: &lt;p&gt;Infection with nidoviruses like corona- and arteriviruses induces a reticulovesicular network of interconnected ER-derived double-membrane vesicles (DMVs) and other membrane structures. This network is thought to accommodate the viral replication machinery, and protect it from innate immune detection. We hypothesized that the innate immune response machinery has tools to counteract the formation of these virus-induced membrane structures in order to inhibit virus replication. Here we have investigated the effect of type I interferon on the formation of arterivirus-induced membrane structures. Our approach involved ectopic expression of arterivirus non-structural proteins nsp2 and nsp3, which formed DMVs in the absence of other viral triggers of the interferon (IFN) response such as replicating viral RNA. Thus, this set-up can be used to identify immune effectors that specifically target the (formation of) virus-induced replication structures. Using large-scale electron microscopy mosaic maps, we found that IFN-β treatment significantly reduced the formation of the membrane structures. Strikingly, we also observed abundant stretches of double-membrane sheets (a proposed intermediate of DMV formation) in IFN-β-treated samples, suggesting the disruption of DMV biogenesis. Three interferon-stimulated gene products, two of which have been reported to target the hepatitis C virus replication structures, were tested for their possible involvement, but none of them affected membrane structure formation. Our study reveals the existence of a previously unknown innate immune mechanism that antagonizes the viral hijacking of host membranes. It also provides a solid basis for further research into the poorly understood interactions between the innate immune system and virus-induced replication structures.&lt;/p&gt;
description: &lt;p&gt;For opening .svs files (large .tiff files) please use Aperio Imagescope.&lt;/p&gt;&lt;p&gt;The free Aperio Imagescope from Leica can be found at http://www.leicabiosystems.com/digital-pathology/digital-pathology-management/imagescope/&lt;br&gt;&lt;br&gt;The .xml files contain annotations to the .svs files with the same file names.&lt;/p&gt;
DOI: 10.17026/dans-zvq-dq4w
title: Water and energy fluxes measurement in Speulderbos

description: &lt;p&gt;This research provided comprehensive measurement and modelling of forest water and energy budgets and discussed in depth on the canopy interception of rainfall and subsequent evaporation from interception.&lt;/p&gt;
DOI: 10.17026/ls/buklk7
title: :unav

description: :unav
DOI: 10.17026/ls/dkjyoq
title: :unav

description: :unav
DOI: 10.17026/dans-zvk-p7mh
title: Spatial patterns of throughfall in a Douglas-fir forest

description: &lt;p&gt;In this research, a Douglas-fir stand was revisited to evaluate the changes in the throughfall spatial distribution and its temporal stability due to forest growth and thinning. We used 32 funnel-type collectors distributed in a random stratified array within a 0.2 ha plot to measure throughfall amounts from February to November 2015. The data collected and the scripts used for their analysis has been stored in this depository.&lt;/p&gt;
DOI: 10.17026/ls/y5vv4p
title: :unav

description: :unav
DOI: 10.17026/ls/kv3zjf
title: Supplementary data to the paper: Neuropsychiatric adverse effects of synthetic glucocorticoids: a systematic review and meta-analysis

description: The dataset includes supplement data of the article: Neuropsychiatric adverse effects of synthetic glucocorticoids: a systematic review and meta-analysis.
DOI: 10.17026/dans-xt2-xpej
title: Protocol for Health Observations in Growing-Finishing Pigs

description: &lt;p&gt;This file contains the protocol for performing health observations in growing-finishing pigs as was applied in our research. It was created based mainly on the Welfare Quality protocol and Fit For Pigs app and combined this with other literature and the authors' expertise. The protocol contains observations both at pen and pig level, and for each observed component a definition of the component and associated scoring classes is provided, when possible illustrated with pictures.&lt;/p&gt;
description: Date: 2023-01-31
description: Date Submitted: 2023-01-31
DOI: 10.17026/ls/djbmqj
title: Antibiotic prescribing and Non-prescribing in Nursing home residents with signs and symptoms Ascribed to urinary tract infection
title: ANNA study

description: The objective of the ANNA-study, a cluster randomized controlled trial (cRCT) was to investigate whether an electronic health record integrated decision tool, combined with supportive interventions, results in more appropriate antibiotic prescribing in nursing home residents with suspected urinary tract infection, without negative consequences for residents. This study was conducted in 16 nursing homes in the Netherlands from March 2019 – March 2020. 

Parallel to the main study a process evaluation study was conducted, with the objective to assess the internal and external validity ofthe cRCT, and to identify facilitators and barriers in implementing the intervention.
description: A document is attached that describes the information and data available from the study. It also described which information/data is readily available, and which information/data is available for reuse and under which conditions.
DOI: 10.17026/ls/oemovc
title: Effects of lighted incubation and foraging enrichment during rearing on individual fear behaviour, corticosterone, and neuroplasticity in laying hen pullets - Data and protocols behaviour tests

description: This dataset contains the protocols and data from five behaviour tests performed in laying hen pullets, namely a detour test (DT), voluntary approach test (VAT), open field test (OFT), tonic immobility test (TI) and a manual restraint test (MR). These tests were performed as part of a 2x2 factorial design study that investigated the effects of light during incubation and enrichment during rearing on behaviour and physiology of laying hen pullets. This experiment was part of PPILOW. This project has received funding from the European Union’s Horizon 2020 Research and Innovation Programme under grant agreement number 816172.