cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21501447
title: S3: Zircon U–Pb, oxygen and hafnium isotopic characteristics of the Neoarchaean–Palaeoproterozoic Betsiboka Suite, Madagascar: tracing source to sink pathways in Proterozoic and Phanerozoic provenance studies

description: Zircon U–Pb data
DOI: 10.6084/m9.figshare.21501447.v1
title: S3: Zircon U–Pb, oxygen and hafnium isotopic characteristics of the Neoarchaean–Palaeoproterozoic Betsiboka Suite, Madagascar: tracing source to sink pathways in Proterozoic and Phanerozoic provenance studies

description: Zircon U–Pb data
DOI: 10.6084/m9.figshare.21501450
title: S5: Zircon U–Pb, oxygen and hafnium isotopic characteristics of the Neoarchaean–Palaeoproterozoic Betsiboka Suite, Madagascar: tracing source to sink pathways in Proterozoic and Phanerozoic provenance studies

description: MC-LA-ICP-MS hafnium isotopic data collected from zircon
DOI: 10.6084/m9.figshare.21501450.v1
title: S5: Zircon U–Pb, oxygen and hafnium isotopic characteristics of the Neoarchaean–Palaeoproterozoic Betsiboka Suite, Madagascar: tracing source to sink pathways in Proterozoic and Phanerozoic provenance studies

description: MC-LA-ICP-MS hafnium isotopic data collected from zircon
DOI: 10.5281/zenodo.7271766
title: ULTRA-SR: Synthetic Data

description: <strong>ULTRA-SR: Ultrasound Localisation and TRacking Algorithms for Super Resolution</strong> The ULTRA-SR Challenge was held at the 2022 IEEE International Ultrasound Symposium in Venice, Italy. The aim of the ULTRA-SR challenge is to extensively evaluate the performance of localization and tracking algorithms for Ultrasound Localization Microscopy. Two realistic simulated datasets of microvascular flow generated, using flow physics, acoustic field simulation with low and high clinical ultrasound frequencies, integrated with non-linear bubble dynamics. The ULTRA-SR Challenge dataset is publicly available for researchers to benchmark new algorithms and software. Additional information is available at: https://ultra-sr.com/ Pre-print paper to cite which describes the data generation: https://doi.org/10.48550/arXiv.2211.00754
description: This work is supported by UKRI EPSRC EP/T008970/1
DOI: 10.5281/zenodo.7271765
title: ULTRA-SR: Synthetic Data

description: <strong>ULTRA-SR: Ultrasound Localisation and TRacking Algorithms for Super Resolution</strong> The ULTRA-SR Challenge was held at the 2022 IEEE International Ultrasound Symposium in Venice, Italy. The aim of the ULTRA-SR challenge is to extensively evaluate the performance of localization and tracking algorithms for Ultrasound Localization Microscopy. Two realistic simulated datasets of microvascular flow generated, using flow physics, acoustic field simulation with low and high clinical ultrasound frequencies, integrated with non-linear bubble dynamics. The ULTRA-SR Challenge dataset is publicly available for researchers to benchmark new algorithms and software. Additional information is available at: https://ultra-sr.com/ Pre-print paper to cite which describes the data generation: https://doi.org/10.48550/arXiv.2211.00754
description: This work is supported by UKRI EPSRC EP/T008970/1
DOI: 10.25402/cer.21501465
title: Comparative economic outcomes in patients with focal seizures initiating eslicarbazepine acetate versus brivaracetam in the long-term care setting in the USA: Supplementary materials

description: Aim: To compare all-cause and epilepsy-specific pharmacy and total costs associated with initiation of eslicarbazepine acetate (ESL) or brivaracetam (BRV) among patients with focal seizures in long-term care (LTC) in theUS. Methods: This retrospective analysis used data from IQVIA’s New DataWarehouse. Results: 298 patients initiated ESL and 282 patients initiated BRV. Initiation of ESL versus BRV was associated with 33.3% lower all-cause pharmacy costs, 34.4% lower epilepsy-specific pharmacy costs, 21.3% lower all-cause total costs and 30.9% lower epilepsy-specific total costs (all p &lt; 0.0001). Conclusion: Among patients with focal seizures in LTC in the US, initiation of ESL versus BRV was associated with significant reductions in all-cause and epilepsy-specific pharmacy and total costs compared with initiation of BRV.
DOI: 10.25402/cer.21501465.v1
title: Comparative economic outcomes in patients with focal seizures initiating eslicarbazepine acetate versus brivaracetam in the long-term care setting in the USA: Supplementary materials

description: Aim: To compare all-cause and epilepsy-specific pharmacy and total costs associated with initiation of eslicarbazepine acetate (ESL) or brivaracetam (BRV) among patients with focal seizures in long-term care (LTC) in theUS. Methods: This retrospective analysis used data from IQVIA’s New DataWarehouse. Results: 298 patients initiated ESL and 282 patients initiated BRV. Initiation of ESL versus BRV was associated with 33.3% lower all-cause pharmacy costs, 34.4% lower epilepsy-specific pharmacy costs, 21.3% lower all-cause total costs and 30.9% lower epilepsy-specific total costs (all p &lt; 0.0001). Conclusion: Among patients with focal seizures in LTC in the US, initiation of ESL versus BRV was associated with significant reductions in all-cause and epilepsy-specific pharmacy and total costs compared with initiation of BRV.
DOI: 10.5281/zenodo.7248056
title: Datacubes for Landslide Detection with SAR Imagery

description: Four analysis-ready datacubes with multiple layers of SAR time-series data and interferometric products (coherence, InSAR) and auxiliary topographic information (elevation, slope, aspect, curvature) for multiple landslide events along with the corresponding landslide labels. Area Cause Date of event Dimensions Label Type Label Source Hokkaido, Japan Earthquake 06-Sep-18 {'y': 5382, 'x': 4398, 'timestep': 26, 'timepair': 16} Segmentation link Puerto Rico Hurricane Maria 16-09-2017 - 02-10-2017 {'y': 7134, 'x': 19251, 'timestep': 6, 'timepair': 4} Landslide heads link Mt Talakmau, Indonesia Earthquake 25-Feb-22 {'y': 4313, 'x': 3006, 'timestep': 20, 'timepair': 12} Segmentation link Kaikoura, New Zealand Earthquake 14-Nov-16 {'y': 16973, 'x': 15930, 'timestep': 5, 'timepair': 9} Landslide centroids link <strong>Acknowledgements</strong><br> This work has been enabled by the Frontier Development Lab Program (FDL). FDL is a collaboration between SETI Institute and Trillium Technologies Inc., in partnership with the Department of Energy (DOE) , National Aeronautics and Space Administration (NASA), and U.S. Geological Survey (USGS).The material is based upon work supported by NASA under award No(s) NNX14AT27A.<br>
DOI: 10.5281/zenodo.7248055
title: Datacubes for Landslide Detection with SAR Imagery

description: Four analysis-ready datacubes with multiple layers of SAR time-series data and interferometric products (coherence, InSAR) and auxiliary topographic information (elevation, slope, aspect, curvature) for multiple landslide events along with the corresponding landslide labels. Area Cause Date of event Dimensions Label Type Label Source Hokkaido, Japan Earthquake 06-Sep-18 {'y': 5382, 'x': 4398, 'timestep': 26, 'timepair': 16} Segmentation link Puerto Rico Hurricane Maria 16-09-2017 - 02-10-2017 {'y': 7134, 'x': 19251, 'timestep': 6, 'timepair': 4} Landslide heads link Mt Talakmau, Indonesia Earthquake 25-Feb-22 {'y': 4313, 'x': 3006, 'timestep': 20, 'timepair': 12} Segmentation link Kaikoura, New Zealand Earthquake 14-Nov-16 {'y': 16973, 'x': 15930, 'timestep': 5, 'timepair': 9} Landslide centroids link <strong>Acknowledgements</strong><br> This work has been enabled by the Frontier Development Lab Program (FDL). FDL is a collaboration between SETI Institute and Trillium Technologies Inc., in partnership with the Department of Energy (DOE) , National Aeronautics and Space Administration (NASA), and U.S. Geological Survey (USGS).The material is based upon work supported by NASA under award No(s) NNX14AT27A.<br>
DOI: 10.6084/m9.figshare.21331059
title: Development of Specific-Barcode from Chloroplast Genome and Its Application in Metabarcoding Molecular Identification of Chinese Patent Medicines Berberidis Radix

description: Chloroplast genomes have been widely considered as a valuable resource for phylogenetic reconstruction and molecular marker development in plant species. In this study, for the first time, we systematically compared the complete chloroplast genome sequences of the six <em>Berberis</em> species (<em>B. julianae</em>, <em>B. tsienii</em>, <em>B. pruinose</em>, <em>B. thunbergii</em>, <em>B. poiretii</em> and <em>B. wilsoniae</em>), which commonly were used as medicinal herb Berberidis Radix. The <em>ndhD-ccsA</em> as highly divergent region was found and taken as a potential marker for species identification. Combined with DNA metabarcoding technology, the barcode was applied to the Chinese patent medicine containing Berberidis Radix (Sankezhen). The results showed that the six complete chloroplast genomes exhibited a typical quadripartite structure which ranging from 165,934 to 168,828 bp in length. A total of 147 unique genes were identified in each chloroplast genome, comprising 101 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Comparative genome analysis demonstrated that the six chloroplast genomes were highly conserved in genome size, GC contents, and gene organization. The phylogenetic relationships of six <em>Berberis</em> plants were revealed and the results showed that <em>Mahonia</em> was supported as separate clade in the <em>Berberis</em> genera tree, which was coincident with previous studies. The nucleotide diversity analysis revealed seven variable loci in protein coding regions, and four variable loci in gene spacer regions, respectively. The primer pair 1508F-1864R on <em>ndhD-ccsA </em>region was proven to precisely discriminate the six studied <em>Berberis</em> species and recovered the biodiversity of <em>Berberis</em> species in Chinese patent medicines. In general, this study provides meaningful genetic information for <em>Berberis</em> plants, and establishes a method to realize the identification of Berberidis Radix as multi-origin Chinese medicinal materials, which can be applied to Chinese patent medicines containing Berberidis Radix.
DOI: 10.6084/m9.figshare.21331059.v4
title: Development of Specific-Barcode from Chloroplast Genome and Its Application in Metabarcoding Molecular Identification of Chinese Patent Medicines Berberidis Radix

description: Chloroplast genomes have been widely considered as a valuable resource for phylogenetic reconstruction and molecular marker development in plant species. In this study, for the first time, we systematically compared the complete chloroplast genome sequences of the six <em>Berberis</em> species (<em>B. julianae</em>, <em>B. tsienii</em>, <em>B. pruinose</em>, <em>B. thunbergii</em>, <em>B. poiretii</em> and <em>B. wilsoniae</em>), which commonly were used as medicinal herb Berberidis Radix. The <em>ndhD-ccsA</em> as highly divergent region was found and taken as a potential marker for species identification. Combined with DNA metabarcoding technology, the barcode was applied to the Chinese patent medicine containing Berberidis Radix (Sankezhen). The results showed that the six complete chloroplast genomes exhibited a typical quadripartite structure which ranging from 165,934 to 168,828 bp in length. A total of 147 unique genes were identified in each chloroplast genome, comprising 101 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Comparative genome analysis demonstrated that the six chloroplast genomes were highly conserved in genome size, GC contents, and gene organization. The phylogenetic relationships of six <em>Berberis</em> plants were revealed and the results showed that <em>Mahonia</em> was supported as separate clade in the <em>Berberis</em> genera tree, which was coincident with previous studies. The nucleotide diversity analysis revealed seven variable loci in protein coding regions, and four variable loci in gene spacer regions, respectively. The primer pair 1508F-1864R on <em>ndhD-ccsA </em>region was proven to precisely discriminate the six studied <em>Berberis</em> species and recovered the biodiversity of <em>Berberis</em> species in Chinese patent medicines. In general, this study provides meaningful genetic information for <em>Berberis</em> plants, and establishes a method to realize the identification of Berberidis Radix as multi-origin Chinese medicinal materials, which can be applied to Chinese patent medicines containing Berberidis Radix.
DOI: 10.6084/m9.figshare.21331059.v5
title: Development of Specific-Barcode from Chloroplast Genome and Its Application in Metabarcoding Molecular Identification of Chinese Patent Medicines Berberidis Radix

description: Chloroplast genomes have been widely considered as a valuable resource for phylogenetic reconstruction and molecular marker development in plant species. In this study, for the first time, we systematically compared the complete chloroplast genome sequences of the six <em>Berberis</em> species (<em>B. julianae</em>, <em>B. tsienii</em>, <em>B. pruinose</em>, <em>B. thunbergii</em>, <em>B. poiretii</em> and <em>B. wilsoniae</em>), which commonly were used as medicinal herb Berberidis Radix. The <em>ndhD-ccsA</em> as highly divergent region was found and taken as a potential marker for species identification. Combined with DNA metabarcoding technology, the barcode was applied to the Chinese patent medicine containing Berberidis Radix (Sankezhen). The results showed that the six complete chloroplast genomes exhibited a typical quadripartite structure which ranging from 165,934 to 168,828 bp in length. A total of 147 unique genes were identified in each chloroplast genome, comprising 101 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Comparative genome analysis demonstrated that the six chloroplast genomes were highly conserved in genome size, GC contents, and gene organization. The phylogenetic relationships of six <em>Berberis</em> plants were revealed and the results showed that <em>Mahonia</em> was supported as separate clade in the <em>Berberis</em> genera tree, which was coincident with previous studies. The nucleotide diversity analysis revealed seven variable loci in protein coding regions, and four variable loci in gene spacer regions, respectively. The primer pair 1508F-1864R on <em>ndhD-ccsA </em>region was proven to precisely discriminate the six studied <em>Berberis</em> species and recovered the biodiversity of <em>Berberis</em> species in Chinese patent medicines. In general, this study provides meaningful genetic information for <em>Berberis</em> plants, and establishes a method to realize the identification of Berberidis Radix as multi-origin Chinese medicinal materials, which can be applied to Chinese patent medicines containing Berberidis Radix.
DOI: 10.26302/sshade/experiment_kd_20220525
title: Optical constants of Mg- and Fe-rich amorphous silicate Mg$_{(1-x)}$Fe$_x$SiO$_3$, x=0.1 - 0.2 - 0.3 - 0.4, 10-300 K, UV-mm range

description: UV to mm optical constants of four Mg- and Fe-rich amorphous silicates Mg$_{(1-x)}$Fe$_x$SiO$_3$, x=0.1 - 0.2 - 0.3 - 0.4, at 10, 100, 200 and 300 K. The optical constants are calculated from mass absorption coefficients measured in the 5 - 1000 µm (2000-10 cm-1) range and extrapolated in the range 0.024 - 5 µm and 1000 - 100000 µm.
DOI: 10.26302/sshade/experiment_kd_20220525_002
title: Optical constants of Mg- and Fe-rich amorphous silicate Mg$_{(1-x)}$Fe$_x$SiO$_3$, x=0.1 - 0.2 - 0.3 - 0.4, processed samples, 10-300 K, UV-mm range

description: UV to mm optical constants of four Mg- and Fe-rich amorphous silicates Mg$_{(1-x)}$Fe$_x$SiO$_3$, x=0.1 - 0.2 - 0.3 - 0.4, processed samples, at 10, 100, 200 and 300 K. The optical constants are calculated from mass absorption coefficients measured in the 5 - 1000 µm (2000-10 cm-1) range and extrapolated in the range 0.024 - 5 µm and 1000 - 100000 µm.
DOI: 10.26302/sshade/experiment_kd_20220331
title: Optical constants of Mg-rich glassy silicates (1-x)MgO-xSiO2, 10-300 K, UV-mm range

description: UV to mm optical constants of four Mg-rich glassy silicates (1-x)MgO-xSiO2, x=0.35, 0.40 and 0.50 (two samples), at 10, 100, 200 and 300 K. The optical constants are calculated from mass absorption coefficients measured in the 5 - 1000 µm (2000-10 cm-1) range and extrapolated in the range 0.024 - 5 µm and 1000 - 100000 µm.
DOI: 10.6084/m9.figshare.20572620
title: Pseudomonas aegrilactucae sp. nov. and Pseudomonas morbosilactucae sp. nov., pathogens causing bacterial rot of lettuce in Japan

description: Supplementary material for ‘<em>Pseudomonas aegrilactucae </em>sp. nov. and <em>Pseudomonas</em> <em>morbosilactucae </em>sp. nov., pathogens causing bacterial rot of lettuce in Japan’ as published in <em>International Journal of Systematic and Evolutionary Microbiology.</em>
DOI: 10.6084/m9.figshare.20572620.v1
title: Pseudomonas aegrilactucae sp. nov. and Pseudomonas morbosilactucae sp. nov., pathogens causing bacterial rot of lettuce in Japan

description: Supplementary material for ‘<em>Pseudomonas aegrilactucae </em>sp. nov. and <em>Pseudomonas</em> <em>morbosilactucae </em>sp. nov., pathogens causing bacterial rot of lettuce in Japan’ as published in <em>International Journal of Systematic and Evolutionary Microbiology.</em>
DOI: 10.5281/zenodo.5127354
title: Dataset raw data related to article "In-depth genetic and molecular characterization of Diaphanous Related Formin 2 (DIAPH2) and its role in the inner ear"

description: This record contains the raw data (Exome sequencing) related to article "In-depth genetic and molecular characterization of DIAPH2 as a novel candidate gene for hearing loss" <strong>ABSTRACT </strong> Hereditary hearing loss is characterized by an extreme genetic heterogeneity. Nowadays, whole-exome sequencing represents a reasonably cost-effective approach for both mutational screening of known deafness genes and novel disease-gene identification. Here, we investigate the role of Diaphanous-related formin 2 (DIAPH2), coding for a protein involved in actin filament elongation, in nonsyndromic hearing loss. Using whole-exome sequencing, we found a predicted pathogenic missense variant at a conserved site in <em>DIAPH2</em>, which segregated with nonsyndromic X-linked hearing loss in an Italian family. Our immunohistochemical studies indicated that the mouse ortholog protein Diaph2 is expressed during development in the cochlea, specifically in the actin-rich stereocilia of the sensory outer hair cells. <em>In-vitro</em> studies showed a possible functional impairment of the mutant DIAPH2 protein upon RhoA-dependent activation. Finally, <em>Diaph2</em> knock-out and knock-in mice were generated by CRISPR/Cas9 technology and auditory brainstem response measurements performed at 4, 8 and 14 weeks. However, no hearing impairment was detected, possibly due to functional redundancy/compensation by other diaphanous proteins. Our findings indicate that <em>DIAPH2</em> may play a role in the inner ear; further studies are however needed to clarify the contribution of <em>DIAPH2</em> to deafness.
DOI: 10.5281/zenodo.5127353
title: Dataset raw data related to article "In-depth genetic and molecular characterization of Diaphanous Related Formin 2 (DIAPH2) and its role in the inner ear"

description: This record contains the raw data (Exome sequencing) related to article "In-depth genetic and molecular characterization of DIAPH2 as a novel candidate gene for hearing loss" <strong>ABSTRACT </strong> Hereditary hearing loss is characterized by an extreme genetic heterogeneity. Nowadays, whole-exome sequencing represents a reasonably cost-effective approach for both mutational screening of known deafness genes and novel disease-gene identification. Here, we investigate the role of Diaphanous-related formin 2 (DIAPH2), coding for a protein involved in actin filament elongation, in nonsyndromic hearing loss. Using whole-exome sequencing, we found a predicted pathogenic missense variant at a conserved site in <em>DIAPH2</em>, which segregated with nonsyndromic X-linked hearing loss in an Italian family. Our immunohistochemical studies indicated that the mouse ortholog protein Diaph2 is expressed during development in the cochlea, specifically in the actin-rich stereocilia of the sensory outer hair cells. <em>In-vitro</em> studies showed a possible functional impairment of the mutant DIAPH2 protein upon RhoA-dependent activation. Finally, <em>Diaph2</em> knock-out and knock-in mice were generated by CRISPR/Cas9 technology and auditory brainstem response measurements performed at 4, 8 and 14 weeks. However, no hearing impairment was detected, possibly due to functional redundancy/compensation by other diaphanous proteins. Our findings indicate that <em>DIAPH2</em> may play a role in the inner ear; further studies are however needed to clarify the contribution of <em>DIAPH2</em> to deafness.
DOI: 10.6084/m9.figshare.21378780.v1
title: replication.zip

description: Replication package for the Intent Study.
DOI: 10.6084/m9.figshare.21501513
title: Data from Linkages between Sphagnum metabolites and peatland CO2 uptake are sensitive to seasonality in warming trends

description: This file contains the data used in Sytiuk et al. Linkages between Sphagnum metabolites and peatland CO2 uptake are sensitive to seasonality in warming trends. Accepted in New Phytologist. <br> There are data for: <br> - the concentration of the nine primary and secondary metabolites quantified in <em>Sphagnum</em> species (water phenols, chlorophyll a and b, carotenoids, total phenols, flavonoids, tannins, carbohydrates, and proline) - PCA scores performed on <em>Sphagnum</em> metabolite matrix - Environmental data - CO2 exchanges at the plot level <br> For more info about these data sets, please contact Vincent Jassey.
DOI: 10.6084/m9.figshare.21501513.v1
title: Data from Linkages between Sphagnum metabolites and peatland CO2 uptake are sensitive to seasonality in warming trends

description: This file contains the data used in Sytiuk et al. Linkages between Sphagnum metabolites and peatland CO2 uptake are sensitive to seasonality in warming trends. Accepted in New Phytologist. <br> There are data for: <br> - the concentration of the nine primary and secondary metabolites quantified in <em>Sphagnum</em> species (water phenols, chlorophyll a and b, carotenoids, total phenols, flavonoids, tannins, carbohydrates, and proline) - PCA scores performed on <em>Sphagnum</em> metabolite matrix - Environmental data - CO2 exchanges at the plot level <br> For more info about these data sets, please contact Vincent Jassey.
DOI: 10.6084/m9.figshare.21378780.v2
title: replication.zip

description: Replication package for the Intent Study.
DOI: 10.34740/kaggle/dsv/4447892
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5523/bris.1dcxespcsafm02fba4bckx0ymt
title: SPHERE house scripted dataset: A multi-sensor dataset with annotated activities of daily living recorded in a residential setting v1.0 (updated version at DOI: 10.5523/bris.2h0wyctxrd69j2oqccsi45hy1p)

description: This dataset expands the original Sphere Challenge dataset with access to a full set of both training and testing data. This dataset is well-adapted for use to predict aspects of the activities of residents within a smart home based only on observed sensor data. An accompanying data descriptor is under submission to Nature Scientific Data. This dataset has been superseded. Updated version available at: https://doi.org/10.5523/bris.2h0wyctxrd69j2oqccsi45hy1p
DOI: 10.7294/21230690.v2
title: 3D Metadata Schema

description: Supplemental materials for Web3D paper - Levels of Representation and Data Infrastructures in Entomo-3D: An applied research approach to addressing metadata curation issues to support preservation and access of 3D. <br> One 3D metadata schema and three dataset pipeline figures
DOI: 10.7294/21230690
title: 3D Metadata Schema

description: Supplemental materials for Web3D paper - Levels of Representation and Data Infrastructures in Entomo-3D: An applied research approach to addressing metadata curation issues to support preservation and access of 3D. <br> One 3D metadata schema and three dataset pipeline figures