cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/21858717.v2
title: Reprocessed MODIS Version 6.1 Leaf Area Index dataset

description: IntroductionThe leaf area index (LAI) data sets were generated by reprocessing the MODIS version 6.1 LAI products.The raw data used include the MODIS LAI Version 6.1 products MCD15A2H (2002.7.4-2021), MOD15A2H (2000.2.18-2002.6.26) (Myneni et al., 2021) and MODIS Land Cover Type product MCD12Q1 (2001-2021) (Friedl and Sulla-Menashe, 2022).The algorithm is mainly based on the two-step integrated method developed by Yuan et al. (2011), and the method of background value calculation was updated.For each year being reprocessed, the nearest 9-year data include itself are used.We use the corresponding year's land cover data for calculating the multi-year average, local per class mean, per class mean and multi-year per class mean (ref. Fig. 4, Yuan et al., 2011).Data descriptionThese monthly LAI data were provided at 0.5-degree resolution covering the period 2000-2021. Data of each year is stored in one NetCDF file, namely lai_monthly_0.5_{YEAR}.nc.For LAI data with more spatial or temporal resolutions, see Land-Atmosphere Interaction Research Group at Sun Yat-sen University (bnu.edu.cn).CautionThe reprocessed data for downloading consists two MODIS version 6.1 products, i.e., MCD15A2H (2002.7.4-2021) and MOD15A2H (2000.2.18-2002.6.26). The prefix “MCD” stands for a combined product, whose algorithm chooses the best pixel available from all the acquisitions of both MODIS sensors located on NASA’s Terra and Aqua satellites, while “MOD” data are retrieved only from the Terra satellite. We have found that their temporal-mean values were different especially in the equatorial region, which may result in an unrealistic trend (see Lin et al., 2022 for detailed discussion). Therefore, attention should be paid when using the reprocessed products for long-term trend analysis and data starting from year 2003 (i.e., only MCD) was recommended for LAI trend study. <strong>Data citation</strong>Lin, W.; Yuan, H.; Dong, W.; Zhang, S.; Liu, S.; Wei, N.; Lu, X.; Wei, Z.; Hu, Y.; Dai, Y. Reprocessed MODIS Version 6.1 Leaf Area Index Dataset and Its Evaluation for Land Surface and Climate Modeling. <em style="color:rgb(34, 34, 34);">Remote Sens.</em> <strong style="color:rgb(34, 34, 34);">2023</strong>, <em style="color:rgb(34, 34, 34);">15</em>, 1780. https://doi.org/10.3390/rs15071780Yuan, H., Dai, Y., Xiao, Z., Ji, D., Shangguan, W., 2011. Reprocessing the MODIS Leaf Area Index Products for Land Surface and Climate Modelling. Remote Sensing of Environment, 115(5), 1171-1187. doi:10.1016/j.rse.2011.01.001
DOI: 10.5281/zenodo.7535398
title: Cellular uptake of silica particles influences EGFR signaling pathway and is affected in response to EGF

description: <strong>Background:</strong> The human epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase that is involved in several key cellular processes such as cell proliferation and differentiation, and it has been linked to the development and progression of various cancers (e.g. breast and lung). Researchers have attempted to improve current cancer-targeted therapies by conjugating molecules on the surface of (nano)particles to efficiently target and inhibit EGFR. However, very few in vitro studies have investigated the effect of particles per se on EGFR signaling and dynamics. Furthermore, the impact of concomitant exposure of particles and EGFR ligands, such as epidermal growth factor (EGF) on cellular uptake efficiency has received little attention. <strong>Purpose: </strong>The purpose of this research was to determine the effects of silica (SiO2) particles on EGFR expression and intracellular signaling pathways in A549 lung epithelial cells, in the presence or absence of epidermal growth factor (EGF). <strong>Results: </strong>We showed that A549 cells are able to internalize SiO<sub>2</sub> particles with core diameters of 130 nm and 1 µm without affecting cell proliferation or migration. However, both SiO<sub>2</sub> particles interfere with the EGFR signaling pathway by raising the endogenous levels of extracellular signal-regulated kinase (ERK) 1/2. Furthermore, both in the presence and absence of SiO<sub>2</sub> particles, the addition of EGF increased cell migration. EGF also stimulated cellular uptake of 130 nm SiO<sub>2</sub> particles but not 1 µm particles. The increased uptake is primarily associated with EGF-stimulated macropinocytosis. <strong>Conclusion: </strong>This study shows that SiO<sub>2</sub> particle uptake interferes with cellular signaling pathways and can be boosted by concurrent exposure to the bioactive molecule EGF. SiO<sub>2</sub> particles, both alone and in combination with the ligand EGF, interfere with EGFR signaling pathway in a size-dependent manner.
DOI: 10.5281/zenodo.7535397
title: Cellular uptake of silica particles influences EGFR signaling pathway and is affected in response to EGF

description: <strong>Background:</strong> The human epidermal growth factor receptor (EGFR) is a receptor tyrosine kinase that is involved in several key cellular processes such as cell proliferation and differentiation, and it has been linked to the development and progression of various cancers (e.g. breast and lung). Researchers have attempted to improve current cancer-targeted therapies by conjugating molecules on the surface of (nano)particles to efficiently target and inhibit EGFR. However, very few in vitro studies have investigated the effect of particles per se on EGFR signaling and dynamics. Furthermore, the impact of concomitant exposure of particles and EGFR ligands, such as epidermal growth factor (EGF) on cellular uptake efficiency has received little attention. <strong>Purpose: </strong>The purpose of this research was to determine the effects of silica (SiO2) particles on EGFR expression and intracellular signaling pathways in A549 lung epithelial cells, in the presence or absence of epidermal growth factor (EGF). <strong>Results: </strong>We showed that A549 cells are able to internalize SiO<sub>2</sub> particles with core diameters of 130 nm and 1 µm without affecting cell proliferation or migration. However, both SiO<sub>2</sub> particles interfere with the EGFR signaling pathway by raising the endogenous levels of extracellular signal-regulated kinase (ERK) 1/2. Furthermore, both in the presence and absence of SiO<sub>2</sub> particles, the addition of EGF increased cell migration. EGF also stimulated cellular uptake of 130 nm SiO<sub>2</sub> particles but not 1 µm particles. The increased uptake is primarily associated with EGF-stimulated macropinocytosis. <strong>Conclusion: </strong>This study shows that SiO<sub>2</sub> particle uptake interferes with cellular signaling pathways and can be boosted by concurrent exposure to the bioactive molecule EGF. SiO<sub>2</sub> particles, both alone and in combination with the ligand EGF, interfere with EGFR signaling pathway in a size-dependent manner.
DOI: 10.6084/m9.figshare.22340584
title: Ovarian Granulosa Cell Genomics in PCOS .zip

description: To investigate gene expression in ovarian granulosa cells by using high-throughput gene sequencing and to investigate pathogenesis in phlegm wet polycystic ovary syndrome (PCOS) patients using functional and pathway analyses.
DOI: 10.5281/zenodo.6125809
title: Cellular uptake of silica and gold nanoparticles induces early activation of nuclear receptor NR4A1

description: The approval of new nanomedicines requires a deeper understanding of the interaction between cells and nanoparticles (NPs). Silica (SiO<sub>2</sub>) and gold (Au) NPs have shown great potential in biomedical applications, such as the delivery of therapeutic agents, diagnostics, and biosensors. NP-cell interaction and internalization can trigger several cellular responses, including gene expression regulation. The identification of differentially expressed genes in response to NP uptake contributes to a better understanding of the cellular processes involved, including potential side effects. We investigated gene regulation in human macrophages and lung epithelial cells after acute exposure to spherical 60 nm SiO<sub>2</sub> NPs. SiO<sub>2</sub> NPs uptake did not considerably affect gene expression in epithelial cells, whereas five genes were up-regulated in macrophages. These genes are principally related to inflammation, chemotaxis, and cell adhesion. NR4A1, an important modulator of inflammation in macrophages, was found to be up-regulated. The expression of this gene was increased upon 1 h of macrophage exposure to spherical 50 nm AuNPs and 200 nm spherical SiO<sub>2</sub> NPs. NR4A1 can thus be an important immediate regulator of inflammation provoked by NP uptake in macrophages.
DOI: 10.5281/zenodo.6125808
title: Cellular uptake of silica and gold nanoparticles induces early activation of nuclear receptor NR4A1

description: The approval of new nanomedicines requires a deeper understanding of the interaction between cells and nanoparticles (NPs). Silica (SiO<sub>2</sub>) and gold (Au) NPs have shown great potential in biomedical applications, such as the delivery of therapeutic agents, diagnostics, and biosensors. NP-cell interaction and internalization can trigger several cellular responses, including gene expression regulation. The identification of differentially expressed genes in response to NP uptake contributes to a better understanding of the cellular processes involved, including potential side effects. We investigated gene regulation in human macrophages and lung epithelial cells after acute exposure to spherical 60 nm SiO<sub>2</sub> NPs. SiO<sub>2</sub> NPs uptake did not considerably affect gene expression in epithelial cells, whereas five genes were up-regulated in macrophages. These genes are principally related to inflammation, chemotaxis, and cell adhesion. NR4A1, an important modulator of inflammation in macrophages, was found to be up-regulated. The expression of this gene was increased upon 1 h of macrophage exposure to spherical 50 nm AuNPs and 200 nm spherical SiO<sub>2</sub> NPs. NR4A1 can thus be an important immediate regulator of inflammation provoked by NP uptake in macrophages.
DOI: 10.5683/sp2/dj7i9m
title: LAPOP: Jamaica 2006

description: The Latin American Public Opinion Project (LAPOP) is an academic institution hosted by Vanderbilt University that began with the study of democratic values in Costa Rica, but today carries out surveys in much of Latin America, Canada, the United States, and the Caribbean. In 2004, LAPOP established the AmericasBarometer as multi-country, regularly conducted survey of democratic values and behaviors in the Americas, and the first round included voting-age respondents from 11 countries. LAPOP collected opinions on major problems facing the country and community, threats to security, attitudes towards the country's political system, and trust in government institutions. Also measured were respondents' participation in community organizations, attitudes towards government critics, voting behavior, confidence in local government, and the prevalence of crime. Demographic information collected includes nationality, ethnicity, native language, age, gender, education level, occupation, religion, and whether the respondent lives in an urban or rural area.
DOI: 10.5683/sp2/fffdi8
title: LAPOP: Jamaica 2008

description: The Latin American Public Opinion Project (LAPOP) is an academic institution hosted by Vanderbilt University that began with the study of democratic values in Costa Rica, but today carries out surveys in much of Latin America, Canada, the United States, and the Caribbean. In 2004, LAPOP established the AmericasBarometer as multi-country, regularly conducted survey of democratic values and behaviors in the Americas, and the first round included voting-age respondents from 11 countries. LAPOP collected opinions on major problems facing the country and community, threats to security, attitudes towards the country's political system, and trust in government institutions. Also measured were respondents' participation in community organizations, attitudes towards government critics, voting behavior, confidence in local government, and the prevalence of crime. Demographic information collected includes nationality, ethnicity, native language, age, gender, education level, occupation, religion, and whether the respondent lives in an urban or rural area.
DOI: 10.6084/m9.figshare.22340659
title: DPANN-HV氨基酸合成途径基因分布情况.xlsx

description: 用于描述毕业论文中检测的DPANN-HV氨基酸合成途径基因的分布情况
DOI: 10.5683/sp2/nlhf7q
title: LAPOP: Jamaica 2010

description: The Latin American Public Opinion Project (LAPOP) is an academic institution hosted by Vanderbilt University that began with the study of democratic values in Costa Rica, but today carries out surveys in much of Latin America, Canada, the United States, and the Caribbean. In 2004, LAPOP established the AmericasBarometer as multi-country, regularly conducted survey of democratic values and behaviors in the Americas, and the first round included voting-age respondents from 11 countries. LAPOP collected opinions on major problems facing the country and community, threats to security, attitudes towards the country's political system, and trust in government institutions. Also measured were respondents' participation in community organizations, attitudes towards government critics, voting behavior, confidence in local government, and the prevalence of crime. Demographic information collected includes nationality, ethnicity, native language, age, gender, education level, occupation, religion, and whether the respondent lives in an urban or rural area.
DOI: 10.5281/zenodo.7774656
title: Dataset and R code for the manuscript: Interspecific facilitation favors rare species establishment and reduces performance disparities among adults

description: The following directory contains the data necessary to replicate the results obtained in the manuscript entitled: <strong>Interspecific facilitation favors rare species establishment and reduces performance disparities among adults.</strong> We provided an R workspace containing the data "Dataset1.RData", a "ReadMe.txt" archive with detailed information on the variables included in "Dataset1.RData", and the R code necessary to replicate the results ("Rcode1.txt")
DOI: 10.5281/zenodo.7774655
title: Dataset and R code for the manuscript: Interspecific facilitation favors rare species establishment and reduces performance disparities among adults

description: The following directory contains the data necessary to replicate the results obtained in the manuscript entitled: <strong>Interspecific facilitation favors rare species establishment and reduces performance disparities among adults.</strong> We provided an R workspace containing the data "Dataset1.RData", a "ReadMe.txt" archive with detailed information on the variables included in "Dataset1.RData", and the R code necessary to replicate the results ("Rcode1.txt")
DOI: 10.18712/nsd-nsd3068-v2
title: PROTECT: The impacts of the UN's Global Compacts on Refugees and Migration on the citizens’ recognition of the right to international protection

description: The University of Bergen, as the lead partner of work package 6 of PROTECT, devised and conducted this survey with fieldwork contribution from the SYNO-CINT-Faktum Consortium of survey firms.

The data set aims to measure the attitudes of citizens in 26 countries to different aspects and components of international refugee protection. In addition, it provides some potential explanatory variables measured at the individual level, ranging from regular demographic variables (e.g., age, gender, country, region, income) to variables measuring respondents’ position within the global political cleavage system, political orientations, visions about the global political order, notions of citizenship, attitudes to diversity, media use, trust in institutions, etc. 

Data were collected in the following countries: Austria, Belgium, Canada, Croatia, Czech Republic, Denmark, Estonia, France, Germany, Greece, Hungary, Italy, Lithuania, Mexico, Netherlands, Norway, Poland, Romania, Slovakia, Slovenia, South Africa, Spain, Sweden, Turkey , UK and USA.

The data was collected in full compliance with the General Data Protection Regulation (Regulation (EU) 2016/679) after informed consent from the respondents.
Licensed under Creative Commons Attribution 4.0 International.
DOI: 10.6084/m9.figshare.22340665
title: 本课题所用引物列表

description: 用于描述毕业论文中所用的引物
DOI: 10.6084/m9.figshare.22340665.v2
title: 本课题所用引物列表

description: 用于描述毕业论文中所用的引物
DOI: 10.6084/m9.figshare.22340665.v1
title: 本课题所用引物列表

description: 用于描述毕业论文中所用的引物
DOI: 10.15131/shef.data.21517908
title: ScANT: A Small Corpus of Scene-Annotated Narrative Texts

description: This is a corpus of text from a children's story, and novels from Project Gutenberg (an online library of free eBooks). Selected chapters from <em>Bunnies from the Future</em> (a children's story), <em>The Wonderful Wizard of Oz</em> (WOZ), <em>Pride and Prejudic</em>e, <em>The Adventures of Sherlock Holmes</em>, <em>A Tale of Two Citie</em>s, and <em>The Great Gatsby</em> were annotated into scene descriptive segments (SDSs). Extracts from <em>Bunnies from the Future</em> are used with the author's permission.
DOI: 10.6084/m9.figshare.21627023
title: 30 m Map of Young Forest Age in China

description: Young forest age mapping at a fine spatial resolution is important for increasing the accuracy of estimating land-atmosphere carbon fluxes and guiding forest management practices. In recent decades, China has actively conducted afforestation and forest protection projects, thereby, laying the foundation for the realization of carbon neutrality. However, very few datasets of the ages of young forests for the whole of China at a fine spatial resolution. The overall accuracy (OA) of the 2020 young forest age (1–31 years) map of China was 90.28%. The produced forest age map provides a basic dataset for research on the forest carbon cycle and forest ecosystem services, and important guidance for government departments.
DOI: 10.6084/m9.figshare.22340695
title: Input_Output_Results.xlsx

description: 3 years data for NIFTY and Dow Jones Index
DOI: 10.6084/m9.figshare.22340695.v1
title: Input_Output_Results.xlsx

description: 3 years data for NIFTY and Dow Jones Index
DOI: 10.17632/nvc843m5tx.1
title: Serum testosterone concentrations and testosterone medications

description: Supplementary_file: Data for total serum testosterone measurements performed at the University of Iowa Hospitals and Clinics from May 1, 2009 to March 31, 2022 along with whether patient was taking testosterone medication at time of serum measurement.  The data elements include: deidentified patient number, legal sex in the electronic medical record, gender identity in electronic medical record (if available), sex assigned at birth in electronic medical record (if available), patient in years at time of serum testosterone measurement (greater than 89 years expressed as ">89"), deidentified order number for the testosterone lab measurement, total serum testosterone concentration (ng/dL), category for the serum testosterone concentration, location type (outpatient or inpatient) for when serum testosterone measurement was made, methodology for serum testosterone measurement (immunoassay or mass spectrometry), testosterone medication prescription at time of serum testosterone measurement (yes or no), route of administration for testosterone medication (if applicable), specific testosterone medication and dose (if applicable; in some cases dose was unknown).
DOI: 10.17632/23dxn7x2cj.1
title: Poder Violeta

description: Documentos de investigación del videojuego PODER VIOLETA 2
DOI: 10.17632/rbm3ybxz54.1
title: Pulmonary exacerbations in early CF lung disease

description: Background: In chronic cystic fibrosis (CF) lung disease, neutrophilic inflammation and T-cell inhibition occur concomitantly, partly due to neutrophil-mediated release of the T-cell inhibitory enzyme Arg1. However, the onset of this tonic inhibition of T cells, and the impact of pulmonary exacerbations (PEs) on this process remains unknown.
Methods: Children with CF aged 0-5 years were enrolled in a longitudinal cohort study at Emory University. Blood (n = 35) and BAL fluid (n = 18) were collected at stable outpatient clinic visits or inpatient PE hospitalizations and analyzed by flow cytometry (for immune cell presence and phenotype) and 20-plex chemiluminescence assay (for immune mediators). Patients were categorized by PE history into no prior PE, past history of PE prior to stable visit, or current PE.
Results: PEs were associated with increased concentration of both pro- and anti-inflammatory mediators in BAL and increased neutrophil frequency and G-CSF in circulation. PE BAL samples showed a trend for an increased frequency of hyperexocytic GRIM neutrophils previously identified in chronic CF. When comparing the expression of the T-cell receptor associated molecule CD3 and the inhibitory programmed death-1 (PD-1) receptor on T cells from bronchoalveolar lavage (BAL) vs. blood samples, we found that CD3 was significantly decreased and PD-1 expression was increased across the board in all patients.  When categorized by PE status, there was no difference in CD3 or PD-1 expression on the circulating blood T cells, but CD3 expression was decreased, and PD-1 was increased on BAL T cells from current PE samples.
Conclusions: These data suggest that airway T cells are engaged during early-life PEs prior to the onset of chronic neutrophilic inflammation. However, increased neutrophil frequency in circulation and trend towards increasing frequency of GRIM neutrophils in the airway offers new insights into the mechanisms of how childhood PEs may accelerate airway inflammation and shift the balance of airway immune cells towards neutrophil dominance.
DOI: 10.17632/rbm3ybxz54.2
title: Pulmonary exacerbations in early CF lung disease

description: Background: In chronic cystic fibrosis (CF) lung disease, neutrophilic inflammation and T-cell inhibition occur concomitantly, partly due to neutrophil-mediated release of the T-cell inhibitory enzyme Arg1. However, the onset of this tonic inhibition of T cells, and the impact of pulmonary exacerbations (PEs) on this process remains unknown.
Methods: Children with CF aged 0-5 years were enrolled in a longitudinal cohort study at Emory University. Blood (n = 35) and BAL fluid (n = 18) were collected at stable outpatient clinic visits or inpatient PE hospitalizations and analyzed by flow cytometry (for immune cell presence and phenotype) and 20-plex chemiluminescence assay (for immune mediators). Patients were categorized by PE history into no prior PE, past history of PE prior to stable visit, or current PE.
Results: PEs were associated with increased concentration of both pro- and anti-inflammatory mediators in BAL and increased neutrophil frequency and G-CSF in circulation. PE BAL samples showed a trend for an increased frequency of hyperexocytic GRIM neutrophils previously identified in chronic CF. When comparing the expression of the T-cell receptor associated molecule CD3 and the inhibitory programmed death-1 (PD-1) receptor on T cells from bronchoalveolar lavage (BAL) vs. blood samples, we found that CD3 was significantly decreased and PD-1 expression was increased across the board in all patients.  When categorized by PE status, there was no difference in CD3 or PD-1 expression on the circulating blood T cells, but CD3 expression was decreased, and PD-1 was increased on BAL T cells from current PE samples.
Conclusions: These data suggest that airway T cells are engaged during early-life PEs prior to the onset of chronic neutrophilic inflammation. However, increased neutrophil frequency in circulation and trend towards increasing frequency of GRIM neutrophils in the airway offers new insights into the mechanisms of how childhood PEs may accelerate airway inflammation and shift the balance of airway immune cells towards neutrophil dominance.