cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12155343.v2
title: EEG and behavioral data for studying neural adaptation during the prolonged visual stimuli classification task

description: We recorded EEG signals and response times of 20 healthy subjects during the visual stimuli classification task. During this task, the ambiguous visual stimuli, Necker cubes, with a different ambiguity degree (<b>a</b>) were presented in random order. We instructed the subjects to press the left or the right key to report their interpretation of each Necker cube orientation.<br>Ambiguity <b>a</b> depends on the contrast of the middle edges and affects the Necker cube orientation (See attached Fig1). In our experiment, we used the Necker cube images with eight different ambiguity degrees, <b>a</b>={0.0, 0.15, 0.4, 0.45, 0.55, 0.6, 0.85, 1}. Half of them, <b>a</b> = {0.0, 0.15, 0.4, 0.45}, are left-oriented (Fig1, A), and another half, <b>a</b>={0.55, 0.6, 0.85, 1}, are right-oriented (Fig1, B). While for <b>a</b>≈0 85 and <b>a</b>≈1 the Necker cubes have a clear orientation (left and right), for <b>a</b>≈0.5 the identification of the cube orientation is a more difficult task since the image becomes ambiguous.<br>The attached MATLAB structure contains 20 cells representing data of 20 subjects. Each cell includes field <i>Trial</i>, which contains 80 EEG trials recorded for 31 channels. The field <i>Label</i> contains the names of the channels. The first 40 trials are chosen from the beginning of the experiment and belong to the condition <b>T1</b>. The rest 40 trials are chosen from the end of the experiment and belong to the condition <b>T6</b>. Each trial has 4 s. length, and the stimulus is presented in the middle of the trial. The field <i>PresentationMoment </i>contains the moments of the stimuli presentations and the field <i>Ambiguity</i> contains the stimulus ambiguity degree <b>a</b>. The field <i>ReactionTime</i> contains the reaction time for each trial, and the field <i>Button</i> contains the identification of the button pressed (1-for the left and 2-for the right). The field <i>Background</i> contains the rest-state EEG signals recorded before the stimuli presentation. EEG signals are sampled at 250 Hz, filtered by a band-pass FIR filter with cut-off points at 1 Hz (HP) and 100 Hz (LP) and by a 50-Hz notch filter. Eyes blinking and heartbeat artifacts are removed with Independent Component Analysis (ICA)
DOI: 10.6084/m9.figshare.19152506.v1
title: Supplementary Material for: Ultrasound-Guided Pudendal Nerve Block versus Ultrasound-Guided Dorsal Penile Nerve Block for Pediatric Distal Hypospadias Surgery

description: <b><i>Introduction:</i></b> The primary aim of the study was to use the duration until the first postoperative analgesic requirement after two different block techniques to compare the analgesic effect. The secondary aims were to compare the two methods for postoperative Children’s Hospital Eastern Ontario Pain Scale (CHEOPS) scores, complications, and parental satisfaction level. <b><i>Materials and Methods:</i></b> This prospective, observational study was conducted with male patients aged 1–7 years in the ASA I–II group, who were scheduled for hypospadias surgery between November 2019 and April 2020. Ultrasound (US)-guided pudendal nerve block (PNB) or US-guided dorsal penile nerve block (DPNB) was administered under general anesthesia before the operation. Postoperative analgesic need, postoperative pain, complications, and parental satisfaction were noted. The STROBE checklist was followed for reporting. <b><i>Results:</i></b> The study was conducted with 30 patients in total, divided into 15 patients receiving PNB and 15 patients receiving DPNB. The effective minimum block duration was longer in the pudendal group at 22.22 ± 0.61 h than in the DPNB group at 22.19 ± 0.57 h. Additional analgesic was required in 4 subjects in the pudendal group and 5 in the DPNB group. There was no statistically significant difference in terms of the variables between the two groups (<i>p</i> &gt; 0.05). <b><i>Discussion:</i></b> US-guided DPNB and PNB were shown to provide successful postoperative analgesia and to have similar effectiveness in pediatric patients undergoing hypospadias surgery in this first prospective study of its kind in the literature. <b><i>Conclusions:</i></b> US-guided DPNB and PNB have been demonstrated to provide effective, safe, and long-term postoperative analgesia in pediatric patients who have undergone hypospadias surgery. Parental satisfaction in both groups is positively influenced by the minimum postoperative analgesia requirement, the long-term analgesic effect, and the lack of any complications.
DOI: 10.6084/m9.figshare.20220042.v1
title: SciSciNet_Link_NobelLaureates

description: SciSciNet_Link_NobelLaureates
DOI: 10.6084/m9.figshare.6071747.v1
title: fig-1.JNB

description: Mulberry seedlings (<i>Morus alba</i> L.) were used in this study to test for hydrogen peroxide as a potential systemic messenger in photosynthetic induction.
DOI: 10.60893/figshare.jcp.28107338.v1
title: Details on charge calculations and the developed force field

description: Tar file containing LAMMPS input/output files for implementing the force field for functionalized hBN and cp2k input/output files for partial charge calculations
DOI: 10.6084/m9.figshare.14763258.v1
title: Indigo_snake_HSM_data_with_covariates

description: This file contains covariate values for the 497,649 background points and 1215 indigo snake presence (used) points used to develop our model. We have withheld specific locations of snake observations, but they are available on request, either from the authors or from the U.S. Fish and Wildlife Service. Briefly, each covariate layer was measured at several spatial scales that are denoted by the number in the column name. Base scales are the individual pixel values (30 m pixels) for that layer and numbers 250, 500, 1000, 2500, or 5000 represent the radii of a circular buffer (in meters) used to calculate a mean value around each point. Secific details reguarding data sources are provided in the full publication but a list of layers.
DOI: 10.6084/m9.figshare.20549409.v1
title: Supplementary Material for: Communicating Precision Medicine Research: Multidisciplinary Teams and Diverse Communities

description: <b><i>Introduction:</i></b> Precision medicine research investigates the differences in individuals’ genetics, environment, and lifestyle to tailor health prevention and treatment options as part of an emerging model of health care delivery. Advancing precision medicine research will require effective communication across a wide range of scientific and health care disciplines and with research participants who represent diverse segments of the population. <b><i>Methods:</i></b> A multidisciplinary group convened over the course of a year and developed precision medicine research case examples to facilitate precision medicine research discussions with communities. <b><i>Results:</i></b> A shared definition of precision medicine research as well as six case examples of precision medicine research involving genetic risk, pharmacogenetics, epigenetics, the microbiome, mobile health, and electronic health records were developed. <b><i>Discussion/Conclusion:</i></b> The precision medicine research definition and case examples can be used as planning tools to establish a shared understanding of the scope of precision medicine research across multidisciplinary teams and with the diverse communities in which precision medicine research will take place. This shared understanding is vital for successful and equitable progress in precision medicine.
DOI: 10.6084/m9.figshare.25245730.v1
title: treefile in the Fig. 5b

description: treefile in the Fig. 5bBacteria: Fig.5b_bac.treefileArchaea: Fig.5b_ar.treefile
DOI: 10.6084/m9.figshare.19745608.v2
title: Nanopore-only assemblies for genomic surveillance of the global priority drug-resistant pathogen, Klebsiella pneumoniae

description: Study typing table produced by Kleborate and study SNP matrix produced by Pathogenwatch.
DOI: 10.6084/m9.figshare.25809211.v1
title: Supplementary Material for: Application of nanoparticles as novel adsorbents in blood purification strategies

description: Background: Blood purification therapy for patients overloaded with metabolic toxins or drugs still needs improvement. Blood purification therapies, such as in hemodialysis or peritoneal dialysis can profit from a combined application with nanoparticles. Summary: In this review, the published literature is analyzed with respect to nanomaterials that have been customized and functionalized as nano-adsorbents during blood purification therapy. Liposomes possess a distinct combined structure composed of a hydrophobic lipid bilayer and a hydrophilic core. The liposomes which have enzymes in their aqueous core or obtain specific surface modifications of the lipid bilayer can offer appreciated advantages. Preclinical and clinical experiments with such modified liposomes show that they are highly efficient and generally safe. They may serve as indirect and direct adsorption materials both in hemodialysis and peritoneal dialysis treatment for patients with renal or hepatic failure. Apart from dialysis, nanoparticles made of specially designed metal and activated carbon have also been utilized to enhance the removal of solutes during hemoadsorption. Results are a superior adsorption capacity and a good hemocompatibility shown during treatment of patients with toxication or end-stage renal disease. In summary, nanomaterials are promising tools for improving the treatment efficacy of organ failure or toxication.
KEY MESSAGES
The pH-transmembrane liposomes and enzyme-loaded liposomes are two representatives of liposomes with modified aqueous inner core which have been put into practice in dialysis.
Unmodified or physiochemically modified liposomal bilayers are ideal binders for lipophilic protein-bound uremic toxins or cholestatic solutes, thus liposome-supported dialysis could become the next-generation hemodialysis treatment of artificial liver support system.
Novel nano-based sorbents featuring large surface area, high adsorption capacity and decent biocompatibility have shown promise in treatment of uremia, hyperbilirubinemia, intoxication, and sepsis.
A major challenge of production lies in avoiding changes in physical and chemical properties induced by manufacturing and sterilizing procedures.
DOI: 10.6084/m9.figshare.26139349.v1
title: Dispersion Data.xlsx

description: Dispersion Data generated using FEM method
DOI: 10.6084/m9.figshare.24559687.v5
title: CRISPR Screen for Mouse Teratomas (.fastq files)

description: CRISPR screening readouts in immuno-deficient and -proficient mice.
DOI: 10.6084/m9.figshare.24411652.v1
title: Supplementary Material for: Effects of Aliskiren Monotherapy versus Amlodipine Monotherapy in Hypertensive Patients with Obesity or Type 2 Diabetes Mellitus

description: Introduction: Renin-angiotensin system inhibitors have been reported to exert protective effects against organ damage and failure; however, the impact of direct renin inhibitor as monotherapy has not been assessed. Here we investigated the effects of 24-week monotherapy with aliskiren compared to amlodipine in hypertensive patients with type 2 diabetes or obesity. Methods: In this randomized intervention study, 62 adult hypertensive patients with visceral obesity (defined as a body mass index [BMI] greater than 25 kg/m2 and visceral adipose tissue area [VFA] greater than 100 cm2) or type 2 diabetes mellitus (age 57 ± 13, 65% men, BMI 28.8 ± 4.8 kg/m2, VFA 134.8 ± 47.0 cm2, blood pressure 141 ± 16/86 ± 13 mmHg) were randomized to receive 24-week treatment with aliskiren (max. 300 mg) or amlodipine (max. 10 mg). The primary outcome was the change in VFA at 24 weeks post-treatment. Results: Change in VFA did not differ significantly from baseline in either group. Systolic blood pressure significantly decreased at 12 weeks (-10 mmHg, P = 0.001) and 24 weeks (-10 mmHg, P = 0.001) in the amlodipine group and at 24 weeks (-11 mmHg, P = 0.001) in the aliskiren group. Diastolic blood pressure significantly decreased at 24 weeks (-6 mmHg, P = 0.009) only in the amlodipine group. Although the estimated glomerular filtration rates did not significantly change in either group, the logarithm of urinary albumin excretion significantly decreased at 24 weeks only in the aliskiren group (-0.60, P &lt; 0.001). The 24-week changes in the urinary albumin excretion significantly correlated with the changes in the plasma renin activity in the aliskiren group (r = 0.51, P = 0.008). Conclusion: Aliskiren monotherapy did not show any superiority to amlodipine monotherapy on VFA, estimated glomerular filtration rates, or urinary albumin excretion in obese or type 2 diabetic hypertensive patients.
DOI: 10.6084/m9.figshare.14601270.v1
title: Mapping Longitudinal Migration Patterns from Population-Scale Family Trees

description: Family trees contain information on individuals such as birth and death places and years, and kinship ties, e.g., parent-child, spouse, and sibling relationships. Such information makes it possible to construct population-scale trees and study population dynamics and migration over many generations and far into the past. Despite the recent advances, existing spatial and temporal abstraction techniques for space-time flow data have limitations due to the lack of knowledge about the effects of temporal partitioning on flow patterns and their visualization. In this study, we extract state-to-state migration patterns over a period between 1789 and 1924 from a set of cleaned, geocoded and connected family trees from Rootsweb.com. We use the child ladder approach, one that captures changes in family locations by comparing birthplaces and birthyears of consecutive siblings. Our study has two major contributions. First, we introduce a methodology to reveal patterns and trends for analyzing and mapping of migration across space and time using a family tree dataset. Specifically, we evaluate a series of temporal partitioning methods to capture how changes in temporal partitioning influence the results of patterns and trends. Second, we visualize longitudinal population mobility in the US using time-series flow maps. This is one of the first studies to uncover dynamic migration patterns on a larger spatial and temporal scale, than the more typical micro studies of individual movement. Our findings are reflective of the migration patterns of European descendants in the U.S., while native Americans, Blacks, Mexican populations are not represented in the data. [KC1] [KC1]Need to discuss about this more in limitations, and maybe put in in the abstract and/or introduction. Since this is a methodological paper to map migration from trees, I don’t think we need to add this in the title.
DOI: 10.6084/m9.figshare.28449218.v3
title: Climate-induced Citizen Noncompliance Undermines State Capacity in Africa (codes and processed data)

description: This repository contains the processed data and R scripts needed to replicate the analysis for the paper Climate-induced Citizen Noncompliance Undermines State Capacity in Africa.
DOI: 10.6084/m9.figshare.28600796.v1
title: An analysis of dust aerosols in Northwest China based on air-borne platform observations

description: The PCASP-100X is an airborne optical spectrometer that measures particles in the 0.10 - 3.0 μm diameter range. This instrument is currently in use on research aircraft in more than 20 countries.The PCASP-100X was originally designed and manufactured by Particle Measuring Systems of Boulder, Colorado, but is now offered exclusively by DMT. Updated electronics have enhanced the probe’s sizing resolution and data system interface.
DOI: 10.6084/m9.figshare.25918582.v1
title: Green finance in the YEB and YRB

description: green finance
DOI: 10.6084/m9.figshare.10302425.v2
title: Genomes from polar regions

description: 214 genome bins from seawater metagenomes of polar regions
DOI: 10.6084/m9.figshare.11874825.v1
title: Thamnaconus septentrionalis genome supporting data

description: This dataset includes the de novo transcriptome assembly, gene annotations and a high quality genome-wide Hi-C heatmap of Thamnaconus septentrionalis.
DOI: 10.6084/m9.figshare.1203565.v1
title: PONE-D-14-13172 ROS production

description: ROS production raw data about MS PONE-D-14-13172
DOI: 10.25380/iastate.19740171.v2
title: Global 1 km resolution daily near-surface air temperature for 2020

description: A gridded 1 km resolution global (50°S ~79°N) daily maximum and minimum near-surface air temperature dataset for 2020 that was generated using a seamless 1 km resolution land surface temperature dataset, a 30-arc second (~1 km) resolution digital elevation model (DEM) data, and air temperature observations at weather stations and a spatially varying coefficient model with sign preservation (SVCM-SP) algorithm. The gridded air temperature dataset is of great use in global studies of urban, climate, and hydrology. Documentation for this dataset can be found with the 2003 data. Data from other years is available at: https://doi.org/10.25380/iastate.c.6005185
DOI: 10.6084/m9.figshare.14559993.v1
title: The association between covid-19 and toxoplasmosis

description: Data set for the paper "<b>Toxoplasmosis: A new risk factor for acquiring SARS-CoV-2 infection and a severe course of Covid-19 disease"</b>
DOI: 10.6084/m9.figshare.28351136.v1
title: Trained Weights for Herbarium Sample Segmentation CNN Model

description: This dataset contains the trained weights for a convolutional neural network (CNN) model designed to segment herbarium samples from scanned images. The CNN model is built on the OCRNet architecture, as implemented in the https://github.com/PaddlePaddle/PaddleSeg toolkit for semantic segmentation.The final weights were obtained by fine-tuning the OCRNet architecture on a dataset of 400 high-resolution fern images, originally published by White et al. (2020; https://doi.org/10.1002/aps3.11352). This dataset includes corresponding masks generated through a combination of automated and manual curation tools, providing a robust foundation for training a segmentation model.For instructions on using the model, please visit: https://github.com/sales-lab/powerplant.git
DOI: 10.6084/m9.figshare.9114839.v1
title: WoS charity fund cites 09-18

description: WoS charity fund cites 09-18
DOI: 10.6084/m9.figshare.14374997.v1
title: Research challenges and directions in HVAC fault prevalence

description: This study provides a review of the current state of knowledge, gaps, and potential value in research on the prevalence of faults in commercial buildings. Two separate efforts were made in this study: (1) we performed a literature review to determine the extent of currently available fault prevalence data for heating, ventilation, and air-conditioning (HVAC) systems, and (2) we conducted dozens of interviews with subject matter experts and stakeholders to determine the HVAC fault data that would be of greatest value. Through the literature review and interviews, we discovered unmet needs for empirical data on the prevalence of faults at the desired level of granularity, consistency, and scale; this lack of data leads us to recommend future work studying commercial buildings’ HVAC fault prevalence, with robust fault taxonomy and a variety of meaningful fault prevalence metrics.
DOI: 10.4225/03/5a5569cf93b73
title: All behavioural data for 'Conscious access in the near absence of attention: Critical extensions on the dual-task paradigm'

description: Matlab structure containing all behavioural data supporting our research article 'Conscious access in the near absence of attention: Critical extensions on the dual-task paradigm'<br><br>Includes data for 24 subjects across 3 experiments.- Exp1: Face gender discrimination- Exp2: Disk colour discrimination- Exp3: Blended face/disk discrimination<br><br>Data is organised by experimental conditions for type 1 and type 2 signal detection analysis. For each trial subjects' 8AFC decision + 4-level confidence rating is supplied along with the signal truth on that trial and, for sanity checking, the correctness of the trial response.<br><br>For instance, <b>dualtask_data.Exp1.confidence.SP(1,6,2)</b> prints to screen the 1st 8AFC selection made by subject 2 in the 6th block of the Single Peripheral condition in Experiment 1: <b>-2</b> (indicating a confidence rating of '2' on the left side of the response screen).
DOI: 10.6084/m9.figshare.28801157.v1
title: <b><i>Single electrically induced epileptic afterdischarge triggers synaptic weakening, AMPA receptor endocytosis and shrinkage of dendritic spines in the hippocampus</i></b>

description: Dataset of the manuscript entitled '<i>Single electrically induced epileptic afterdischarge triggers synaptic weakening, AMPA receptor endocytosis and shrinkage of dendritic spines in the hippocampus</i><br>
DOI: 10.6084/m9.figshare.7599020.v1
title: codoncounts.zip

description: This directory contains codon counts analysed by genomegaMap in D. J. Wilson and The CRyPTIC Consortium (2019). The codon counts for a particular coding sequence in the Mycobacterium tuberculosis H37Rv reference genome (version 2, genbank accession number NC_000962.2) are contained in each codoncounts.txt file, where the filename is prefixed by the gene identifier. Each file contains a matrix of integers with no row or column names, where element (row i, column j) of the matrix records the number of genomes exhibiting triplet j at codon position i. Positions are ordered as per NC_000962.2, beginning with the start codon. Terminal stop codons are not included. Triplets are ordered as follows:TTT,TTC,TTA,TTG,TCT,TCC,TCA,TCG,TAT,TAC,TGT,TGC,TGG,CTT,CTC,CTA,CTG,CCT,CCC,CCA,CCG,CAT,CAC,CAA,CAG,CGT,CGC,CGA,CGG,ATT,ATC,ATA,ATG,ACT,ACC,ACA,ACG,AAT,AAC,AAA,AAG,AGT,AGC,AGA,AGG,GTT,GTC,GTA,GTG,GCT,GCC,GCA,GCG,GAT,GAC,GAA,GAG,GGT,GGC,GGA,GGG,---where --- represents any call other than the 61 non-stop codons, including deletions, ambiguous or filtered calls, and premature stop codons. 10,209 genomes were mapped against the H37Rv reference, with details and short read archive accession numbers described in the original paper by The CRyPTIC Consortium and the 100,000 Genomes Project (2018).<br>
DOI: 10.17870/bathspa.13312334.v1
title: Witches Can't be Burned - Research Timeline & Research Questions

description: <i>Witches Can’t Be Burned</i> is a practice-based research project initiated by Silva Semerciyan, Drama Lecturer at Bath Spa University, wherein the creation of a playscript became both an instrument and a process for challenging institutional sexism. The play investigated Arthur Miller’s <i>The Crucible</i> and the historical case of the Salem Witch trials through the lens of feminist critical theory to create a diverse narrative, which opened up dialogue about the representation of girls and women in so called ‘masterpieces’. It was commissioned by the National Theatre as part of their Connections Festival 2020 in which 19 youth theatre companies across the UK would perform the play.<br><br>This item contains the Research Timeline and Research Questions.