cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22827890.v1
title: Forest sample plots data of National Park of Hainan Tropical Rainforest in 2003, 2008, 2013,2018 and 2022.

description: The research area of this study is National Park of Hainan Tropical Rainforest. From February 20, 2022 to July 30, 2022, the investigators went to National Park of Hainan Tropical Rainforest to conduct a forest resources survey. The scope of the investigation includes Jianfengling Branch of Hainan Tropical Rainforest National Park Administration, Maorui Branch of Hainan Tropical Rainforest National Park Administration, Wuzhishan Branch of Hainan Tropical Rainforest National Park Administration, Diaoluo Mountain Branch of Hainan Tropical Rainforest National Park Administration, Limushan Branch of Hainan Tropical Rainforest National Park Administration, Bawangling Branch of Hainan Tropical Rainforest National Park Administration and Yingge Ling Branch of the Hainan Tropical Rainforest National Park Administration. In order to be consistent with the size of forest sample plots in the Hainan Continuous Forest Inventory, the forest sample plots investigated in this study was 25.8m × 25.8m. The distance between two forest sample plots was about 4 kilometers. A total of 98 forest sample plots were investigated, of which 64 were reviewed and 34 were supplementary. The investigators mainly investigated the tree species, DBH, tree height of trees with diameter above 5 cm in the forest sample plots. At the same time, data such as latitude, longitude, climate, slope gradient, slope direction and altitude of the forest sample plots were collected. In addition, this study combined with the data of the sixth, seventh, eighth and ninth Hainan Continuous Forest Inventory in the National Park of Hainan Tropical Rainforest included 64 forest permanent sample plots. In principle, the National Continuous Forest Inventory should be conducted every five years. Every year, the competent forestry authorities under the State Council shall uniformly arrange provinces to carry out National Continuous Forest Inventory. The review shall be conducted in the same year and the results shall be reported to the competent forestry authority under The State Council two years later.
DOI: 10.6084/m9.figshare.3551166.v1
title: Appendix B. Derivations of the parameter ranges given in Table 1.

description: Derivations of the parameter ranges given in Table 1.
DOI: 10.17632/9sm2x2twv4
title: Extended Data: Characterization of data on strategies for the promotion of global citizenship in Ibero-American higher education institutions (2015-2024).

description: Data collection was carried out through the search and systematization of experiences published on official university websites, academic articles and publications in social networks. Experiences related to curricular issues, pedagogical projects and academic events carried out exclusively in higher education institutions in Ibero-American countries were taken into account, excluding practices developed in other environments. Data is published in Spanish.
DOI: 10.17632/xrtrb4vsbx
title: Structural insight into BRCA1-BARD1 complex recruitment to damaged chromatin

description: The BRCA1-BARD1 complex directs the DNA double-strand break (DSB) repair pathway choice to error-free homologous recombination (HR) during the S-G2 stages. Targeting BRCA1-BARD1 to the DSB-proximal sites requires the BARD1-mediated nucleosome interaction and histone mark recognition. Here, we report the cryo-EM structure of BARD1 bound to a ubiquitinated nucleosome core particle (NCPUb) at 3.1 Å resolution and illustrate how BARD1 simultaneously recognizes the DNA damage-induced mark H2AK15ub and DNA replication-associated mark H4K20me0 on the nucleosome. In vitro and in vivo analyses reveal that the BARD1-NCPUb complex is stabilized by BARD1-nucleosome interaction, BARD1-ubiquitin interaction, and BARD1 ARD domain-BARD1 BRCT domain interaction, and abrogating these interactions is detrimental to HR activity. We further identify multiple disease-causing BARD1 mutations that disrupt BARD1-NCPUb interactions and hence impair HR. Together, this study elucidates the mechanism of BRCA1-BARD1 complex recruitment and retention by DSB-flanking nucleosomes and sheds important light on cancer therapeutic avenues.
DOI: 10.5522/04/25921408.v1
title: Uncorrupted and Corrupted Synthetic Identifiers (based on ALSPAC)

description: These are synthetic identifiers generated based on gold-standard identifiers from participants in the Avon Longitudinal Study of Parents And Children. The datasets have undergone checks and are approved to be released by ALSPAC executive board. The synthetic data includes Mother surnames, Baby surnames and forenames, sex, ethnicity, age of mother at giving birth, ethnicity, index of multiple deprivation, and baby's date of birth.Please refer to my GitHub Repo for full codes and steps to reproduce the process. Please read my paper for full methodology and appendix.Paper Title: Generating Synthetic Identifiers to support development and evaluation of data linkage methods.https://ijpds.org/article/view/2389<br>
DOI: 10.6084/m9.figshare.12095541.v1
title: Merged Metadata Stats File

description: Merged metadata file containing sample codes and statistics for read outputs
DOI: 10.6084/m9.figshare.25992055.v1
title: CFPSdata.zip

description: Data used in this paper is obtained from the China Family Panel Studies (CFPS), which is launched by Peking University, and is a nearly nationwide, comprehensive, longitudinal social survey that is intended to serve research needs on a large variety of social phenomena in contemporary China. At present, the CFPS database contains a total of six waves of data (2010, 2012, 2014, 2016, 2018, 2020).All participants or their legal representatives in the China Family Panel Studies have signed written informed consent forms to participate in the baseline and follow-up surveys. Informed consent was obtained from study participants before completing the study questionnaire. Our study was approved by the Biomedical Ethics Committee of Peking University (IRB00001052-11015).
DOI: 10.6084/m9.figshare.26310994.v1
title: Light reference atlases in blood and tumors

description: Light reference atlases of blood and tumor for:<br><b>Human CD4+ T: </b>original atlas<b>Human CD8+ T: </b>original atlas<b>Human Dendritic cells (DC): </b>original atlas<b>Human Macrophages + Monocytes (MoMac): </b>original atlasOriginal reference atlas were size-reduced using sketching and subsequently curated.Code for reducing size, adapting references, and data sources: https://github.com/carmonalab/Reference_maps
DOI: 10.6084/m9.figshare.3498446.v2
title: HCP-MMP1.0 projected on fsaverage

description: Hi All!<br>Following instructions gathered via twitter and the HCP message board, I've projected the new HCP-MMP1.0 parcellation onto fsaverage. I have attached the annotation files here and detailed my process below:<br>1. Download the correct data from BALSA:https://balsa.wustl.edu/WN56<br>2. Download the correct spheres from the HCP github page:this is detailed here: https://www.mail-archive.com/hcp-users%40humanconnectome.org/msg02890.html<br>3. Using workbench, convert parcellation dabel.nii file label.gii file:<br>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_LEFT Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.label.gii<br>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_RIGHT Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.label.gii<br>4. Using workbench, convert label.gii file to fsaverage space:<br>wb_command -label-resample Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Colors.32k_fs_LR.label.gii L.sphere.32k_fs_LR.surf.gii fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii BARYCENTRIC left.fsaverage164.label.gii<br>wb_command -label-resample Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Colors.32k_fs_LR.label.gii R.sphere.32k_fs_LR.surf.gii fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii BARYCENTRIC right.fsaverage164.label.gii<br><br>5. Using freesurfer, convert files from gii to annot:<br>mris_convert --annot left.fsaverage164.label.gii fs_L-to-fs_LR_fsaverage.L_LR.spherical_std.164k_fs_L.surf.gii lh.HCP-MMP1.annot<br>mris_convert --annot right.fsaverage164.label.gii fs_R-to-fs_LR_fsaverage.R_LR.spherical_std.164k_fs_R.surf.gii rh.HCP-MMP1.annot<br>6. Rejoice and share!<br>
DOI: 10.17632/2854pphnx4
title: brands search in google

description: The database refers to secondary data collected on Google Trends (https://trends.google.com/), representing the search for brands owned by born global firms: GoPro, Twitter, Netflix, Spotify, Airbnb, Uber, and Snapchat; it also includes data refering to the search of brands such as Galaxy, iPhone and iPad, that are owned by companies that cannot be considered born global firms but are still considered innovative. The database presentes all the search traffic history since the brands first arrived in the consumer's ears (differently from well-established brands of multinational companies) because they're launched after 2004. For each brand, it's presented both the absolute and accumulated indexes of the frequency with which the brands are sought on Google. The index is built by the normalization of the real number and presented on a scale from 0 to 100, where each point is divided by the highest point or 100 (“Google Trends: Understanding the data,” n.d.); indexes were chosed instead of real numbers of searches because this enables the comparison of brands in their different stages of maturity.
DOI: 10.6084/m9.figshare.24013776.v1
title: Source_Data

description: Source Data for Main Figs. 1-3 and Extended Data Figs. 1-5. In this manuscript, we have proposed a new origin of the two large low-shear-velocity provinces (LLSVPs) in Earth's deepest mantle.<br>
DOI: 10.6084/m9.figshare.1021508.v1
title: Horseracing R code

description: The R code used to produce the models in "Predicting the Outcome of a Horse Race"
DOI: 10.6084/m9.figshare.4884365.v2
title: Plasmid sequences from A CRISPR Cas9 high-throughput genome editing toolkit for kinetoplastids.

description: Plasmid sequences in GenBank format. For visualization we recommend SnapGene software (from GSL Biotech; free SnapGene Viewer available at snapgene.com).
DOI: 10.17632/7g9dvjvswg
title: Cytoskeleton dynamics during lateral root initiation in Arabidopsis thaliana

description: Morphogenesis of lateral roots relies on the asymmetric cell division of initially symmetric founder cells. This division is preceded by the tightly controlled asymmetric radial expansion of these cells. The cellular mechanisms that license and ensure the coordination of these events are unknown. Here, we quantitatively analyse microtubule and F-actin dynamics during lateral root initiation. Using mutants, pharmacological and tissue-specific genetic perturbations, we show that dynamic reorganisation of both microtubule and F-actin networks is necessary for the asymmetric expansion of the founder cells. This cytoskeleton remodelling intertwines with auxin signalling in the pericycle and endodermis in order for founder cells to acquire a basic polarity required for initiating lateral root development.
DOI: 10.17632/j7hm4fnwn7
title: ANALISIS DE UN SISTEMA DE ACUMULACION DE CALOR CON CAMBIO DE FASE PARA UN DESTILADOR MULTIETAPA

description: Para que un destilador solar produzca agua pura durante las horas de la noche es necesario acumular la energía que llega durante el día como radiación solar. En el presente trabajo se propone el uso de un sistema de almacenamiento de calor latente usando materiales de cambio de fase (PCM), es una manera eficaz de almacenar energía térmica y tiene la ventaja de la capacidad de almacenamiento de alta energía y la naturaleza isotérmica del proceso de almacenamiento. Se presenta el diseño del recipiente contenedor para el material de cambio de fase y los primeros resultados experimentales del comportamiento de la misma. El PCM utilizado es el Hidróxido de Bario 
Octahidratado . La sal hidratada tiene un punto de fusión y un calor latente óptimos para el uso como acumulador de calor latente del destilador multietapa. Se muestran detalles constructivos de los recipientes contenedores de la sal hidratada y resultados experimentales preliminares.
DOI: 10.17632/tkkbgm4b83
title: Dietary Acrylamide -Linked Burden of Cancers in Four Sub-Sahara African Countries: A Review and Data Synthesis

description: In supplementary 2, we used three variables to estimate dietary acrylamide (AA) exposure: AA concentration in food, mass of food consumed per day, and body weight. We then calculated the cancer risk of dietary AA exposure as years of life lost (YLL) and years lived with disability (YLD). We obtained the average YLL per person (YLLpp) of kidney, ovarian, and uterine cancers for the five-year period by dividing the total YLL of each cancer by its mortality rate. Likewise, we obtained the average YLD per person (YLDpp) of each cancer by dividing the total YLD of each cancer by its prevalence rate. Finally, we computed the dietary AA attributable fraction and rate (per 100,000 persons) of the YLL and YLD of each cancer. Supplementary 1 details the systematic review processes that collected acrylamide data for the study.
DOI: 10.6084/m9.figshare.1342823.v4
title: TopoSWAT Source

description: Topography exerts critical control on many hydrologic, geomorphologic, and environmental biophysical processes. In order to properly model such dynamics in the Soil and Water Assessment Tool (SWAT), we explicitly integrate topography into the initialization procedure with a purpose-built extension. This ArcMap® toolbox (TopoSWAT) interfaces directly with ArcSWAT, to create multiple SWAT data layers, update the SWAT databases and generate the lookup tables required by the model. User defined data layers are processed in a single-step toolbox and include, aspect, elevation, and topographic index (TI), which are then intersected with the vector FAO Global Soils dataset. The toolbox then builds a soil raster layer at the resolution of the project’s base Digital Elevation Model and creates the ArcSWAT required ‘usersoil’ database table along with the corresponding soil lookup table required to map the specific raster soil values to the soil parameters in the ‘usersoil’ database table. This toolbox effectively creates a new soil dataset that incorporates topographic features. This standardized method and toolset allows SWAT modelers to easily incorporate topographic features they believe are important for their catchments without requiring any changes to the current ArcSWAT initialization system. Some of the topographic features may be necessary for process-based routines that one may want to incorporate into SWAT, e.g., energy-budget snowmelt modeling. However, such routines will need to be added to the SWAT model source code. This SWAT toolbox adds flexibility to SWAT modeling with little extra effort on the part of modelers.
DOI: 10.17632/3c628btjy2
title: Power Outage data for US

description: The aim of the project is to detect power outages in real-time in United States by utilizing IP scans done periodically. For each scan, the active IP addresses are stored. Based on the time series data for each IP, a reliability score is computed for each IP. The reliability score corresponds to the correlation possibility between the IP address and power outage in the county. The geographical location of the IP address is obtained through the MaxMind tool. The scanning was done 4 times every day for the last 6 months. Therefore, we have the data of active IP addresses and the reliability scores of each IP address for every scan. Given the huge size of the dataset, partial data is being uploaded here. For access to the entire dataset, please contact the authors.
DOI: 10.6084/m9.figshare.12714419.v1
title: dataset of remote sensing time series for water body change monitoring

description: The dataset is derived from Landsat data which is between DaxiHaizi Reservoir and Chala Reservoir. It consists of one scene selected in July of each year from 1988 to 2008. The resolution of its samples is 30m and its samples contain Red band, Green band, Blue band and Nir band.The datasets have 937 remote image time series change detection samples after selected. It is divided into train datasets and test datasets by the proportion of 0.7 and 0.3.
DOI: 10.6084/m9.figshare.24989700.v2
title: Raw Data for Roth & Sahin 2024

description: Raw data and measurements associated with Roth & Sahin 2024 study on the structure-function relationships of mucociliary clearance in the human airways. https://www.biorxiv.org/content/10.1101/2023.12.24.572054v2
DOI: 10.6084/m9.figshare.29105012.v1
title: [<sup>68</sup>Ga]DOTATOC, on-cassette (Generalized On-cassette method)

description: Time List and Cassette Layout for the synthesis of Gallium-68 DOTATOC using an on-cassette protocol with cyclotron produced [<sup>68</sup>Ga]GaCl<sub>3</sub>Generalized method for labeling DOTA chelator containing peptides with gallium-68This labeling method, uses a preformulated reactor and does not require solid phase extraction (SPE) purification after labeling.Reference: Wang IE, Cheng K, Brooks AF, Scott PJH, Viglianti BL. Towards a General Method for Using Cyclotron-Produced Ga68 to Manufacture Clinical and Research Ga68 Tracers. Molecules. 2024; 29(22):5457. https://doi.org/10.3390/molecules29225457
DOI: 10.6084/m9.figshare.4818319.v1
title: Supplementary Material for: Risk Factors for Severe Reactions during Double-Blind Placebo-Controlled Food Challenges

description: <b><i>Background:</i></b> Severe anaphylactic symptoms can occur during oral food challenges (OFCs). Thus, high-risk patients (e.g., patients with a history of anaphylaxis or high antigen-specific immunoglobulin E [IgE] levels) must carefully undergo OFCs in hospitals. We attempted to identify the risk factors for severe symptoms during OFC testing among high-risk patients. <b><i>Methods:</i></b> We retrospectively evaluated patients' characteristics and severe symptoms that were experienced during a double-blind placebo-controlled food challenge test performed before the patients underwent oral immunotherapy between June 2008 and June 2012. Patients were ≥5 years old and had an anaphylactic history or antigen-specific IgE (&gt;30 kUA/L). Severe symptoms were defined using the grading of the Japanese Anaphylaxis Guidelines, which are modified from the European Academy of Allergology and Clinical Immunology Guidelines. <b><i>Results:</i></b> We evaluated 393 cases with positive test results, including 98 cases with severe symptoms. The most frequent severe symptoms were respiratory (77%), gastrointestinal (28%), cardiovascular (27%), and neurological (13%) symptoms. Multivariate analysis revealed that the significant factors for a severe reaction were a history of anaphylaxis to the causative food (adjusted odds ratio [OR]: 2.147, <i>p</i> = 0.003), older age (per 1 year increase, adjusted OR: 1.102, <i>p</i> = 0.044), and an egg OFC (adjusted OR: 0.433, <i>p = </i>0.003). <b><i>Conclusions:</i></b> The risk factors for a severe reaction to OFCs were a history of an anaphylactic reaction and older age. An egg OFC was associated with low risk of severe symptoms during OFC. Therefore, OFCs for patients with these risk factors should only be performed under specialist supervision with access to rapid treatment and full resuscitation equipment.
DOI: 10.6084/m9.figshare.20140184.v1
title: Fat-suppressed SPAIR T2-weighted MRI sequences for head and neck imaging on the MR-Linac

description: Anonymized images from 5 fat-suppressed (SPAIR) sequences and 1 non-suppressed sequence acquired on 5 head and neck cancer patients on the Unity MR-Linac
DOI: 10.6084/m9.figshare.23576973.v1
title: <strong>When adaptation is slowed down: genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate</strong>

description: Analysis scripts and data files associated with Bock et al. (2023, Molecular Ecology): When adaptation is slowed down: genomic analysis of evolutionary stasis in thermal tolerance during biological invasion in a novel climate. <br> The README.txt file provides additional information on the contents of this archive.
DOI: 10.6084/m9.figshare.24802650.v1
title: fig2

description: <b>Figure 2. Locations that meet basic siting criteria by reactor scale</b>. The figure shows regions which could host reactors of different scale based on landslide potential, protected areas, access to water, population density, exclusion zone, as well as seismic and flood risk. Several of these (e.g., population density, proximity to water) depend on the size of the reactor, and the scale dependent applicability of a region is shown. This figure provides site compatibility and not an estimate of future deployment, and does not supersede the necessity of further site-specific studies.
DOI: 10.6084/m9.figshare.5123389.v1
title: Supplementary Material for: A Methyl-Deficient Diet Modifies Early B Cell Development

description: A functional methyl group donor is essential for the epigenetic regulation of all biological events due to the importance of DNA methylation and histone methylation as an epigenetic marker. However, the epigenetic alterations in the immune system due to methyl donor deficiency are not well known. In this study, we tried to address this question by studying the lymphocyte development and DNA methylation changes caused by a methyl-deficient diet (MDD). We fed one group of C57BL/6J mice with a methyl-sufficient diet (MSD) and the other group with an MDD for 5 months. Flow cytometry analyses of their immune systems showed a decrease in B220+ IgM+ (immature B) cells and an increase in B220+ IgM– (pro/pre-B) cells in the bone marrow of mice fed an MDD. By means of an in vitro OP9 coculture system, we recognized that this B220+ IgM– cell fraction from the MDD has an intrinsic developmental defect. When we quantitatively measured the mRNA expression levels of transcription factors and recombination machinery related to B cell development in the B220+ IgM– cell fraction of their bone marrow, we found that <i>ADA, EBF1, DNTT </i>and <i>Pax5 </i>mRNA expression levels were significantly downregulated in mice fed with an MDD. In addition, there was a drastic decrease in histone methylation profile H3K4me3 in the <i>Pax5 </i>and <i>EBF1 </i>promoters in these B220+ IgM– B cells. However, CpG-DNA methylation profiles had not changed and this revealed that these two promoters are demethylated even under an MSD condition. We also found changed expression levels of the <i>Polycomb </i>group genes <i>(mel18</i>, <i>bmi1</i>, <i>Pc1</i>, <i>Pc2</i>, <i>Ring1A</i>, <i>Ring1B</i>, <i>Ph1)</i> on semi-quantitative RT-PCR. These results indicate that under an MDD condition, early B cell development in bone marrow is easily affected by epigenetic alterations.
DOI: 10.17632/3msrk6xn3h
title: Data for: Understanding Videos at Scale: How to Extract Insights for Business Research

description: Python Code for Video Mining
DOI: 10.17632/tn2fb6hwmp
title: Drosophila re-zero their path integrator at the center of a fictive food patch. Behbahani et al. 2021

description: Data and code for Behbahani et al. 2021, " Drosophila re-zero their path integrator at the center of a fictive food patch."