cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10825164
title: Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons

description: We present here the raw data and scripts to reproduce the results presented in the preprint "Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons" available on BioRxiv. Before using the scripts and associated data, we recommend reading the "readme" word document also available, which details the information available in the different data sheets. 

Preprint abstract : 

Coastal lagoons are transitional ecosystems that host a unique diversity of species and support many ecosystem services. Owing to their position at the interface between land and sea, they are also subject to increasing human impacts, which alter their ecological functioning. Because coastal lagoons are naturally highly variable in their environmental conditions, disentangling the effects of anthropogenic disturbances like eutrophication from those of natural variability is a challenging, yet necessary issue to address. Here, we analyze a dataset composed of macrobenthic invertebrate abundances and environmental variables (hydro-morphology, water, sediment and macrophytes) gathered across 29 Mediterranean coastal lagoons located in France, to characterize the main drivers of community composition and structure. Using correlograms, linear models and variance partitioning, we found that lagoon hydro-morphology (connection to the sea and lagoon surface), which affects the level of environmental variability (salinity and temperature), as well as lagoon-scale benthic habitat diversity (using macrophyte morphotypes) seemed to regulate macrofauna distribution, while eutrophication and associated stressors like low dissolved oxygen, acted upon the existing communities, mainly by reducing species richness and diversity. Furthermore, M-AMBI, a multivariate index composed of species richness, Shannon diversity and AMBI (AZTI's Marine Biotic Index) and currently used to evaluate the ecological state of French coastal lagoons, was more sensitive to eutrophication (18%) than to natural variability (9%), with nonetheless 49% of its variability explained jointly by both. To improve the robustness of benthic indicators like M-AMBI and increase the effectiveness of lagoon benthic habitat management, we call for a revision of the ecological groups at the base of the AMBI index and of the current lagoon typology which could be inspired by the lagoon-sea connection levels used in this study.
DOI: 10.5281/zenodo.10825165
title: Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons

description: We present here the raw data and scripts to reproduce the results presented in the preprint "Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons" available on BioRxiv. Before using the scripts and associated data, we recommend reading the "readme" word document also available, which details the information available in the different data sheets. 

Preprint abstract : 

Coastal lagoons are transitional ecosystems that host a unique diversity of species and support many ecosystem services. Owing to their position at the interface between land and sea, they are also subject to increasing human impacts, which alter their ecological functioning. Because coastal lagoons are naturally highly variable in their environmental conditions, disentangling the effects of anthropogenic disturbances like eutrophication from those of natural variability is a challenging, yet necessary issue to address. Here, we analyze a dataset composed of macrobenthic invertebrate abundances and environmental variables (hydro-morphology, water, sediment and macrophytes) gathered across 29 Mediterranean coastal lagoons located in France, to characterize the main drivers of community composition and structure. Using correlograms, linear models and variance partitioning, we found that lagoon hydro-morphology (connection to the sea and lagoon surface), which affects the level of environmental variability (salinity and temperature), as well as lagoon-scale benthic habitat diversity (using macrophyte morphotypes) seemed to regulate macrofauna distribution, while eutrophication and associated stressors like low dissolved oxygen, acted upon the existing communities, mainly by reducing species richness and diversity. Furthermore, M-AMBI, a multivariate index composed of species richness, Shannon diversity and AMBI (AZTI's Marine Biotic Index) and currently used to evaluate the ecological state of French coastal lagoons, was more sensitive to eutrophication (18%) than to natural variability (9%), with nonetheless 49% of its variability explained jointly by both. To improve the robustness of benthic indicators like M-AMBI and increase the effectiveness of lagoon benthic habitat management, we call for a revision of the ecological groups at the base of the AMBI index and of the current lagoon typology which could be inspired by the lagoon-sea connection levels used in this study.
DOI: 10.5281/zenodo.14258556
title: Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons

description: We present here the raw data and scripts to reproduce the results presented in the preprint "Disentangling the effects of eutrophication and natural variability on macrobenthic communities across French coastal lagoons" available on BioRxiv. Before using the scripts and associated data, we recommend reading the "readme" word document also available, which details the information available in the different data sheets. 

Preprint abstract : 

Coastal lagoons are transitional ecosystems that host a unique diversity of species and support many ecosystem services. Owing to their position at the interface between land and sea, they are also subject to increasing human impacts, which alter their ecological functioning. Because coastal lagoons are naturally highly variable in their environmental conditions, disentangling the effects of anthropogenic disturbances like eutrophication from those of natural variability is a challenging, yet necessary issue to address. Here, we analyze a dataset composed of macrobenthic invertebrate abundances and environmental variables (hydro-morphology, water, sediment and macrophytes) gathered across 29 Mediterranean coastal lagoons located in France, to characterize the main drivers of community composition and structure. Using correlograms, linear models and variance partitioning, we found that lagoon hydro-morphology (connection to the sea and lagoon surface), which affects the level of environmental variability (salinity and temperature), as well as lagoon-scale benthic habitat diversity (using macrophyte morphotypes) seemed to regulate macrofauna distribution, while eutrophication and associated stressors like low dissolved oxygen, acted upon the existing communities, mainly by reducing species richness and diversity. Furthermore, M-AMBI, a multivariate index composed of species richness, Shannon diversity and AMBI (AZTI's Marine Biotic Index) and currently used to evaluate the ecological state of French coastal lagoons, was more sensitive to eutrophication (18%) than to natural variability (9%), with nonetheless 49% of its variability explained jointly by both. To improve the robustness of benthic indicators like M-AMBI and increase the effectiveness of lagoon benthic habitat management, we call for a revision of the ecological groups at the base of the AMBI index and of the current lagoon typology which could be inspired by the lagoon-sea connection levels used in this study.
DOI: 10.5281/zenodo.13887443
title: Table 1 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species

description: Table 1. Measurement data for Megalomys desmarestii, Megalomys luciae, and Oligoryzomys victus (mm)
MeasurementM. desmarestiiM. desmarestiiM. luciaeO. victus(NHM 50.11.30.5-6)(NHM 55.12.24.201)(NHM 53.12.16.2)(NHM 97.12.26.1)Greatest skull length55.2–––Condylo-incisive length53.6–47.5–Breadth of occipital condyles9.6–9.8–Length of diastema17.816.915.67.8Palatal bridge14.012.813.06.2Length of incisive foramen9.48.37.85.4Breadth of incisive foramen3.33.12.72.1Length of maxillary molars8.29.47.74.5Breadth of first maxillary molar2.52.62.51.4External alveolar breadth10.710.510.45.6Cranial height15.714.613.79.3Rostrum length21.0––11.2Rostrum breadth11.410.69.06.1Least interorbital breadth9.19.79.45.1Orbital length17.417.515.611.0Zygomatic breadth30.6–26.916.7Breadth of braincase16.9–15.111.4Breadth of zygomatic plate7.86.16.13.9Head–body length25731226194Tail length254278145*121Hindfoot length (with claw)45595025Length of internal side of ear18201814
*The tail of NHM 53.12.16.2 is incomplete.
description: Published as part of Turvey, Samuel T., Weksler, Marcelo, Morris, Elaine L. & Nokkert, Mark, 2010, Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species, pp. 752 in Zoological Journal of the Linnean Society 160 (4) on page 752, DOI: 10.1111/j.1096-3642.2009.00628.x, http://zenodo.org/record/5754697
DOI: 10.5281/zenodo.13887445
title: Table 2 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species

description: Table 2. Condition of morphological characters for West Indian rice rat taxa
Character traitPennatomysMegalomysOligoryzomysSizeMediumLargeSmallPedal plantar padsUnknownHypothenar absent or vestigial, digitals largeHypothenar present, digitals smallNasals posterior extensionEven with maxillary–frontal– lacrimal suturePosterior to maxillary–frontal– lacrimal sutureEven with maxillary–frontal– lacrimal sutureLacrimal articulationEqual maxillary and frontalPrimarily with maxillaryEqual maxillary and frontalSupraorbital shapeSlightly convergent anteriorly with weak crestConvergent anteriorly with well-developed crestSquared, smooth marginsPosterior margin of zygomatic plateSlightly anterior to M1 alveolusApproximately even with M1 alveolusAnterior to M1 alveolusCarotid circulation patternUnknownIII*II*Anterior section of masseteric crests in ramusJoinedSeparatedSeparatedLabial accessory root on M1AbsentPresentUnknown†Roots on m233Unknown†Roots on m323Unknown†Anteromedian flexus on M1AbsentPresent, shallowPresent, deepMesofossette on M2SingleSingleDoublePosteroloph on M3AbsentPresentPresentAnterolophid on m2 and m3PresentPresentAbsent
Megalomys characters are based on Megalomys luciae and Megalomys desmarestii only.
*Pattern II, stapedial foramen present, sphenofrontal foramen absent; pattern III, stapedial foramen and sphenofrontal foramen absent.
†Other species of Oligoryzomys do not have a labial accessory root on M1, and have only two roots on m2 and m3.
description: Published as part of Turvey, Samuel T., Weksler, Marcelo, Morris, Elaine L. & Nokkert, Mark, 2010, Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species, pp. 761 in Zoological Journal of the Linnean Society 160 (4) on page 761, DOI: 10.1111/j.1096-3642.2009.00628.x, http://zenodo.org/record/5754697
DOI: 10.5281/zenodo.13887447
title: Table 3 in Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species

description: Table 3. Tooth row measurements of Pennatomys nivalis gen. et sp. nov. populations from Nevis, St. Eustatius, and St. Kitts (mm)
NevisSt. EustatiusSt. KittsMaxillary molar row (occlusal)6.12 (5.6–6.4)6.39 (6.1–6.7)6.57 (6.4–6.7)SD = 0.249, n = 14SD = 0.188, n = 14SD = 0.137, n = 6Mandibular molar row (occlusal)6.61 (5.9–7.1)6.65 (6.4–6.9)6.84 (6.4–7.4)SD = 0.237, n = 41SD = 0.141, n = 22SD = 0.240, n = 13
Size range, standard deviation, and sample size given for each measurement.
description: Published as part of Turvey, Samuel T., Weksler, Marcelo, Morris, Elaine L. & Nokkert, Mark, 2010, Taxonomy, phylogeny, and diversity of the extinct Lesser Antillean rice rats (Sigmodontinae: Oryzomyini), with description of a new genus and species, pp. 763 in Zoological Journal of the Linnean Society 160 (4) on page 763, DOI: 10.1111/j.1096-3642.2009.00628.x, http://zenodo.org/record/5754697
DOI: 10.5281/zenodo.14052803
title: Epiphytic macrolichen as indicators of environmental changes in a montane forest of Panama

description: Epiphytic macrolichen as indicators of environmental changes in a montane forest of Panama

Abstract

Introduction: Lichens are a symbiotic association between a mycobiont and a photobiont. They are important to tropical biodiversity and serve as bioindicators of forest conservation and continuity.

Location: Paso Ancho, Baru Volcano National Park, Chiriqui, Panama.

Methods: Three study zones were chosen based on vegetation density and light intensity, named savanna, transition, and forest zone. Additionally, two phorophytes, Comarostaphylis arbutoides (20 individuals per zone) and Quercus spp. (20 individuals per zone), which predominate in the study area, were selected. Data recorded for each phorophyte included diameter at breast height (DBH), light intensity, and altitude. Samples were identified and deposited in the collection of the UCH Herbarium at the Autonomous University of Chiriquí (Panama).

To determine changes in species richness and composition of epiphytic macrolichen, generalized linear models (GLM) and non-metric multidimensional scaling (NMDS) analysis were used.

Results: 47 species of corticolous macrolichens, belonging to three orders, seven families, and 14 genera, were identified. The savanna zone had the highest number of species, with 37, and the phorophyte with the greatest species richness was Comarostaphylis arbutoides, with 41 species. The generalized linear model indicates that zone and phorophyte species influence macrolichen species richness. However, the non-metric multidimensional scaling analysis shows an overlap of macrolichen communities across each zone and phorophyte.

Conclusions: The results indicate that Baru Volcano National Park is an area with a high diversity of corticolous macrolichen. Environmental factors such as light incidence and phorophyte traits influence the distribution and composition of macrolichen communities.

Our database includes a list of identified macrolichen species, along with the environmental and structural forest factors used for the development of this study.

A: Number of sampled phorophytes.

B: Host tree identity (Comarostaphylis arbutoides and Quercus spp.).

C: Study zones based on vegetation density (savanna, forest edge, and forest).

D: Altitude (m a.s.l.) at which each sampled tree was located.

E: Diameter at breast height (DBH) of each phorophyte.

F: Percentage of light incidence near each phorophyte.

G–BA: Macrolichen species and their presence (1) or absence (0) at the study site.
DOI: 10.5281/zenodo.14052804
title: Epiphytic macrolichen as indicators of environmental changes in a montane forest of Panama

description: Epiphytic macrolichen as indicators of environmental changes in a montane forest of Panama

Abstract

Introduction: Lichens are a symbiotic association between a mycobiont and a photobiont. They are important to tropical biodiversity and serve as bioindicators of forest conservation and continuity.

Location: Paso Ancho, Baru Volcano National Park, Chiriqui, Panama.

Methods: Three study zones were chosen based on vegetation density and light intensity, named savanna, transition, and forest zone. Additionally, two phorophytes, Comarostaphylis arbutoides (20 individuals per zone) and Quercus spp. (20 individuals per zone), which predominate in the study area, were selected. Data recorded for each phorophyte included diameter at breast height (DBH), light intensity, and altitude. Samples were identified and deposited in the collection of the UCH Herbarium at the Autonomous University of Chiriquí (Panama).

To determine changes in species richness and composition of epiphytic macrolichen, generalized linear models (GLM) and non-metric multidimensional scaling (NMDS) analysis were used.

Results: 47 species of corticolous macrolichens, belonging to three orders, seven families, and 14 genera, were identified. The savanna zone had the highest number of species, with 37, and the phorophyte with the greatest species richness was Comarostaphylis arbutoides, with 41 species. The generalized linear model indicates that zone and phorophyte species influence macrolichen species richness. However, the non-metric multidimensional scaling analysis shows an overlap of macrolichen communities across each zone and phorophyte.

Conclusions: The results indicate that Baru Volcano National Park is an area with a high diversity of corticolous macrolichen. Environmental factors such as light incidence and phorophyte traits influence the distribution and composition of macrolichen communities.

Our database includes a list of identified macrolichen species, along with the environmental and structural forest factors used for the development of this study.

A: Number of sampled phorophytes.

B: Host tree identity (Comarostaphylis arbutoides and Quercus spp.).

C: Study zones based on vegetation density (savanna, forest edge, and forest).

D: Altitude (m a.s.l.) at which each sampled tree was located.

E: Diameter at breast height (DBH) of each phorophyte.

F: Percentage of light incidence near each phorophyte.

G–BA: Macrolichen species and their presence (1) or absence (0) at the study site.
DOI: 10.15468/dl.asqdwr
title: Occurrence Download

description: A dataset containing 17760 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aluterus monoceros (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17760 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021106-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17909/2kqk-j472
title: TOI-5143 c (TIC ID: 281837575) Transit Photometry used in RM Paper

description: These data are the transit photometry (spanning TESS Sectors 45, 46, 72) utilized in our global fit (combined with Rossiter-McLaughlin measurements from WIYN/NEID) of the hot Jupiter TOI-5143 c's stellar obliquity.
DOI: 10.15468/dl.tynacn
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphomyia altifrons James, 1939"
 ]
}

 The dataset includes 263 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021107-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jj98w6
title: Occurrence Download

description: A dataset containing 1909 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-97.92023 22.29828,-97.8204 22.29828,-97.8204 22.36112,-97.92023 22.36112,-97.92023 22.29828))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1909 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021108-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzydrm
title: Occurrence Download

description: A dataset containing 259265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Europe, North America, Asia)",
 "TaxonKey is Vaccinium myrtillus L.",
 "Year 1999-2015"
 ]
}

 The dataset includes 259265 records from 706 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021088-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48366/r759724
title: Peer-to-peer multi-energy trading in a decentralized network

description: Peer-to-peer (P2P) electricity trading has received a lot of attention in the last decade and recently there has been
growing interest in the evaluation of market design, classical methods, and novel approaches for multi-energy
trading. The existing literature only focused on electricity/electric-gas/electric-heat networks. Therefore, a
comprehensive analysis of P2P multi-energy trading (P2P-MET) in a decentralized network is required for the
multi-energy like electricity, hydrogen gas, and heat all in one framework for a sustainable future. This review
study aims to provide an in-depth understanding of P2P-MET in a decentralized network including layers-defined
multi-source network configurations, trading platforms, classical methods, novel approaches, and mechanisms.
Considering MET, the rising number of prosumers take advantage of the opportunity and make this complicated
decentralized network more complex. To handle the network complexities, smart contracts using distributed
ledger-based blockchain, novel algorithm-based game theory, and some other approaches are reviewed.
Furthermore, this review study covers the limitations, challenges, opportunities, and benefits of P2P-MET as well
as current trends and future directions for a better understanding of the readers. It concludes that P2P-MET using
blockchain/game theory in decentralized networks is alternatively better and more secure.
DOI: 10.15468/dl.gfff2h
title: Occurrence Download

description: A dataset containing 20395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aluterus schoepfii (Walbaum, 1792)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 20395 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021109-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/axwj-5t02
title: Student Feedback

description: It's student feedback dataset. We have attached the requested Excel file. As mentioned in our manuscript, our dataset consists of 11,747 comments. This dataset includes all necessary details, such as the comments, associated aspects, and sentiment labels, to facilitate validation and further exploration of our work.We have attached the requested Excel file. As mentioned in our manuscript, our dataset consists of 11,747 comments. This dataset includes all necessary details, such as the comments, associated aspects, and sentiment labels, to facilitate validation and further exploration of our work. Please enable Safe Browsing to warn against unsafe URLsGo to help
DOI: 10.15468/dl.crysqv
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoring and Managing Ash (MaMA) Lingering Ash Survey- Powered by Anecdata.org"
 ]
}

 The dataset includes 193 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021110-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbnnzw
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphomyia altifrons James, 1939"
 ]
}

 The dataset includes 263 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021111-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.