cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vfnvtk8zww.1
title: Geochemistries of methane-derived authigenic carbonates at gas hydrate mounds on Umitaka Spur

description: Gas hydrate mounds of thermogenic CH4 are located at the central and northern parts of Umitaka Spur in the Sea of Japan (Hiruta et al., 2015). Methane-derived authigenic carbonates (MDACs) were collected from these mounds during UT04 and KY05-08 cruises (Hiruta et al., 2009). Geochemistries of these MDACs are valuable archives of ancient events at the anticline.
Subsample preparation procedures and subsequent geochemical analyses followed those described in Hiruta et al. (2014). Powder samples were prepared from cut surfaces of MDACs. d13C and d18O of CaCO3 in MDACs were determined using an isotope ratio mass spectrometer (Finnigan, MAT252). Carbonate mineralogy was determined using an X-ray diffraction instrument (PANalytical, X’ Pert PRO). The d-space of calcite was calculated using 1.54187 Å for Cu radiation wavelength. Mg content was calculated from the d-space following Hiruta and Matsumoto (2022). The d18O is original value (i.e., not calibrated for Mg content). Note that remaining parts of some MDACs were used in Watanabe et al. (2008) with simplified IDs (italic IDs in remarks).


Uploaded data
Cross section of MDACs (G401_G403)
Cross section of MDACs (PC415)
Cross section of MDACs (PC502)
(with 1 cm interval division)
Cross section of MDACs (PC509)
(with 1 cm interval division)
Cross section of MDACs (PC513)
(with 1 cm interval division)
Fossil shells (G403)
Geochemistries of MDACs (from UT04 cruise)
Geochemistries of MDACs (from KY05-08 cruise)

Related articles
Hiruta, A., Matsumoto, R., 2022. Geochemical comparison of ikaite and methane-derived authigenic carbonates recovered from Echigo Bank in the Sea of Japan. Mar. Geol. 443, 106672. https://doi.org/10.1016/j.margeo.2021.106672.

Hiruta, A., Snyder, G.T., Tomaru, H., Matsumoto, R., 2009. Geochemical constraints for the formation and dissociation of gas hydrate in an area of high methane flux, eastern margin of the Japan Sea. Earth Planet. Sci. Lett. 279, 326-339. https://doi.org/10.1016/j.epsl.2009.01.015.

Hiruta, A., Wang, L.-C., Ishizaki, O., Matsumoto, R., 2014. Last glacial emplacement of methane-derived authigenic carbonates in the Sea of Japan constrained by diatom assemblage, carbon-14, and carbonate content. Mar. Petrol. Geol. 56, 51-62. https://doi.org/10.1016/j.marpetgeo.2014.04.005.

Hiruta, A., Ishizaki, O., Tuchinaga, K., Snyder, G.T., Matsumoto, R., 2015. Influence of the carbon isotopic composition of methane and the proportion of methane-derived bicarbonate on the 13C/12C ratio of dissolved inorganic carbon at the sulfate-methane transition in the Joetsu Basin area, eastern margin of the Sea of Japan. Mar. Petrol. Geol. 67, 468-480. https://doi.org/10.1016/j.marpetgeo.2015.05.004.

Watanabe, Y., Nakai, S., Hiruta, A., Matsumoto, R., Yoshida, K., 2008. U–Th dating of carbonate nodules from methane seeps off Joetsu, Eastern Margin of Japan Sea. Earth. Planet. Sci. Lett. 272, 89-96. https://doi.org/10.1016/j.epsl.2008.04.012.
DOI: 10.5281/zenodo.6908532
title: Oscillation results from Neutrino 2022

description: This archive contains the electronic version (ROOT format) of the results of the measurements of oscillation parameters presented by T2K at Neutrino 2022 (Updated run 1-10 results with the additional multi-ring sample at SK). Both Bayesian and frequentist results are provided for the different oscillation parameters, with 2D confidence/credible regions and 1D DeltaChi2/posterior probability distributions. The Bayesian and frequentist results are separated into two different files, and additionally a tag in the TGraph and histogram names allow differentiating them. In addition to the results in each mass hierarchy hypothesis, the Bayesian file also includes the results marginalized over the mass hierarchy, denoted by a tag "both" in the object names. Please note that Bayesian and frequentist results use different conventions for the mass splitting in the inverted hierarchy: the Bayesian results are in terms of \(\Delta m^2_{32}\) for both normal (NH) and inverted (IH) hierarchies, whereas the frequentist results are plotted versus \(\Delta m^2_{32}\) for the NH, and \(\left| \Delta m^2_{31} \right|\) for the IH. When used, the constraint on theta13 from reactor experiment results corresponds to the value in the PDG 2020 summary table: \(\sin^2(\theta_{13})=(2.20\pm0.07)\times10^{-2}\) <strong>Objects inside the ROOT files</strong><br> ROOT objects contained inside the file are named first with an identifier of which parameter(s) are being shown, followed by a tag "wRC" or "woRC" - indicating whether or not the PDG constraint on theta13 has been applied, followed by another tag "NH", "IH" or "both" - indicating whether the result is respectively for the normal hierarchy, inverted hierarchy or marginalized over the mass hierarchy (this last case is only included in the Bayesian result file). <strong>2D regions</strong><br> Objects of the form gr2D_varX_varY_&lt;wRC,woRC&gt;_&lt;NH,IH,both&gt;_&lt;conf,cred&gt;&lt;68,90,955,997&gt;(_N) are TGraphs corresponding to the 2D confidence ("conf") or credible ("cred") regions for the 2 variables (varX, varY). N is the iterator for different TGraphs corresponding to the same region. 68, 90, 955, 997 correspond respectively to 1-sigma, 90%, 2-sigma, and 3-sigma regions. The best-fit markers are also provided for the 2D results:<br> gr2D_varX_varY_&lt;wRC,woRC&gt;_&lt;NH,IH,both&gt;_bestfit The best fit markers and contour lines are computed for each MH *separately*, i.e. assuming DeltaChi2 is 0 at the minimum or that the total posterior probability integrates to 1 in the mass hierarchy considered. <strong>1D properties</strong><br> Objects of the form h1D_var&lt;chi2,posterior&gt;_&lt;wRC,woRC&gt;_&lt;NH,IH&gt; are TH1D of the DeltaChi2 ("chi2") or posterior probability ("posterior") for oscillation parameter "var". The Bayesian and frequentist results use different conventions with respect to the mass hierarchy:<br> - 1D DeltaChi2 plots use a global minimum over both hierarchies<br> - each 1D posterior probability plot integrates to unity *individually*
DOI: 10.5281/zenodo.6908531
title: Oscillation results from Neutrino 2022

description: This archive contains the electronic version (ROOT format) of the results of the measurements of oscillation parameters presented by T2K at Neutrino 2022 (Updated run 1-10 results with the additional multi-ring sample at SK). Both Bayesian and frequentist results are provided for the different oscillation parameters, with 2D confidence/credible regions and 1D DeltaChi2/posterior probability distributions. The Bayesian and frequentist results are separated into two different files, and additionally a tag in the TGraph and histogram names allow differentiating them. In addition to the results in each mass hierarchy hypothesis, the Bayesian file also includes the results marginalized over the mass hierarchy, denoted by a tag "both" in the object names. Please note that Bayesian and frequentist results use different conventions for the mass splitting in the inverted hierarchy: the Bayesian results are in terms of \(\Delta m^2_{32}\) for both normal (NH) and inverted (IH) hierarchies, whereas the frequentist results are plotted versus \(\Delta m^2_{32}\) for the NH, and \(\left| \Delta m^2_{31} \right|\) for the IH. When used, the constraint on theta13 from reactor experiment results corresponds to the value in the PDG 2020 summary table: \(\sin^2(\theta_{13})=(2.20\pm0.07)\times10^{-2}\) <strong>Objects inside the ROOT files</strong><br> ROOT objects contained inside the file are named first with an identifier of which parameter(s) are being shown, followed by a tag "wRC" or "woRC" - indicating whether or not the PDG constraint on theta13 has been applied, followed by another tag "NH", "IH" or "both" - indicating whether the result is respectively for the normal hierarchy, inverted hierarchy or marginalized over the mass hierarchy (this last case is only included in the Bayesian result file). <strong>2D regions</strong><br> Objects of the form gr2D_varX_varY_&lt;wRC,woRC&gt;_&lt;NH,IH,both&gt;_&lt;conf,cred&gt;&lt;68,90,955,997&gt;(_N) are TGraphs corresponding to the 2D confidence ("conf") or credible ("cred") regions for the 2 variables (varX, varY). N is the iterator for different TGraphs corresponding to the same region. 68, 90, 955, 997 correspond respectively to 1-sigma, 90%, 2-sigma, and 3-sigma regions. The best-fit markers are also provided for the 2D results:<br> gr2D_varX_varY_&lt;wRC,woRC&gt;_&lt;NH,IH,both&gt;_bestfit The best fit markers and contour lines are computed for each MH *separately*, i.e. assuming DeltaChi2 is 0 at the minimum or that the total posterior probability integrates to 1 in the mass hierarchy considered. <strong>1D properties</strong><br> Objects of the form h1D_var&lt;chi2,posterior&gt;_&lt;wRC,woRC&gt;_&lt;NH,IH&gt; are TH1D of the DeltaChi2 ("chi2") or posterior probability ("posterior") for oscillation parameter "var". The Bayesian and frequentist results use different conventions with respect to the mass hierarchy:<br> - 1D DeltaChi2 plots use a global minimum over both hierarchies<br> - each 1D posterior probability plot integrates to unity *individually*
DOI: 10.6084/m9.figshare.20401164
title: Test

description: This is only a test
DOI: 10.6084/m9.figshare.20401164.v2
title: Test

description: This is only a test
DOI: 10.6084/m9.figshare.20401164.v1
title: test.docx

description: This is only a test
DOI: 10.6084/m9.figshare.20281914
title: Supplementary Material for: A novel ANK1 mutation in a neonatal hereditary spherocytosis case: Diagnostic challenges and familial genetic analysis

description: Hereditary spherocytosis (HS) is a congenital disease in which erythrocyte membranes are abnormal, with ANK1 defects as the main cause. The diagnosis of neonatal HS is difficult due to poor phenotypic specificity. Therefore, a detailed inquiry into family history may be helpful for diagnosis. Here, we describe a familial case of HS caused by a novel mutation in ANK1. The proband is a premature infant of Chinese Han ethnicity, characterized by progressive aggravation of anemia and jaundice. The disease was caused by a frameshift mutation (c.3392delT/p.Leu1131Argfs*15) of ANK1 that was identified by genetic testing. In vitro functional experiments showed that this variant may seriously affect the protein expression, and further expanded the mutation spectrum of ANK1-HS. In this case, we emphasize the diagnostic value of early-intervention genetic testing for neonatal hemolytic anemia with a family history.
DOI: 10.6084/m9.figshare.20401323
title: Supplementary Material for: How to Improve Training in Descriptive Psychopathology for Psychiatry Residents: A Delphi Study

description: <b><i>Purpose:</i></b> Descriptive psychopathology (DP) is the language of psychiatry and is dedicated to the description of mental symptoms. Despite its core importance, a systematic review identified a series of shortcomings in its training. This Delphi study seeks to provide guidance for better didactic and clinical training in DP. <b><i>Method:</i></b> The authors used the Delphi method in order to gather, pool, and optimize the knowledgeable opinion of a highly qualified panel of international experts on how to improve DP training. A preliminary phase with open-ended questions was the basis to elaborate a Delphi questionnaire consisting of 14 questions on didactic and clinical training, which was then used in two successive Delphi rounds. Twenty-nine international experts in DP participated throughout the study. <b><i>Results:</i></b> A series of hierarchical lists on how to improve DP training were elaborated. Regarding didactic training, the experts valued the contents and educational methods, as well as recommended authors and texts. Regarding clinical training, the experts valued educational methods, desirable characteristics in clinical supervisors, how to improve the supervisors’ expertise, useful aspects and facilitating questions for direct supervision, and the suitability of including other evaluators besides the supervisor. In the final survey, 94% of the experts considered that the Delphi method had been effective to obtain and improve their opinions. <b><i>Conclusions:</i></b> Insufficient direct supervision in live interviews was considered the most important problem. A series of general measures were proposed to improve DP training: (i) adapting DP training throughout residency, with introductory and advanced levels; (ii) making DP training compulsory in psychiatry curricula; (iii) assessing residents’ DP knowledge and clinical use; and (iv) training the trainers/supervisors in both content (DP) and form (how to train/supervise residents). Within didactic training, epistemology of DP and contemporary and classic authors/texts were the highest rated contents, while supervised discussions based on cases, videos, or readings were the highest rated methods. Within clinical training, 8 aspects of DP that could guide the supervisor were highly rated: mental state examination, dialogue, empathy and understanding, attitude/willingness, knowledge-practice bridge, mental symptom formation, implications for decision-making, and the written report of the encounter.
DOI: 10.6084/m9.figshare.20400996.v1
title: data mindgame.xlsx

description: The data is the result of the mind game experimentation in the University of Nottingham. The file is in excel format that is consisted of two worksheets. The first worksheet name is "data" which stores the experimental result in form of tables. The second worksheet name is "variable_desc" which gives the explanation of each column presented in the "data" worksheet
DOI: 10.25402/fsg.20401317.v1
title: Supplementary Tables – Prognostic implication of serum AFP in patients with hepatocellular carcinoma treated with regorafenib

description: <strong>Supplementary Table S1</strong>. Baseline patient characteristics according to nationality <strong>Supplementary Table S2</strong>. Baseline patient characteristics according to AFP response <br> <strong>Supplementary Table S3. </strong>Univariate and multivariate analysis for PFS including baseline AFP <br> <strong>Supplementary Table S4. </strong>Univariate and multivariate analysis for PFS including AFP response <strong>Supplementary Table S5. </strong>Best overall tumor response by baseline AFP and AFP response
DOI: 10.25402/fsg.20401317
title: Supplementary Tables – Prognostic implication of serum AFP in patients with hepatocellular carcinoma treated with regorafenib

description: <strong>Supplementary Table S1</strong>. Baseline patient characteristics according to nationality <strong>Supplementary Table S2</strong>. Baseline patient characteristics according to AFP response <br> <strong>Supplementary Table S3. </strong>Univariate and multivariate analysis for PFS including baseline AFP <br> <strong>Supplementary Table S4. </strong>Univariate and multivariate analysis for PFS including AFP response <strong>Supplementary Table S5. </strong>Best overall tumor response by baseline AFP and AFP response
DOI: 10.6084/m9.figshare.20400996.v2
title: data mindgame.xlsx

description: The data is the result of the mind game experimentation in the University of Nottingham. The file is in excel format that is consisted of two worksheets. The first worksheet name is "data" which stores the experimental result in form of tables. The second worksheet name is "variable_desc" which gives the explanation of each column presented in the "data" worksheet
DOI: 10.6084/m9.figshare.20400996
title: data mindgame.xlsx

description: The data is the result of the mind game experimentation in the University of Nottingham. The file is in excel format that is consisted of two worksheets. The first worksheet name is "data" which stores the experimental result in form of tables. The second worksheet name is "variable_desc" which gives the explanation of each column presented in the "data" worksheet
DOI: 10.6084/m9.figshare.20400996.v3
title: data mindgame.xlsx

description: The data is the result of the mind game experimentation in the University of Nottingham. The file is in excel format that is consisted of two worksheets. The first worksheet name is "data" which stores the experimental result in form of tables. The second worksheet name is "variable_desc" which gives the explanation of each column presented in the "data" worksheet
DOI: 10.18746/bmth.data.00000246
title: SPLASH study dataset: exploring caregiver perspectives of adults with severe and profound and multiple learning disabilities accessing sedentary hydrotherapy
DOI: 10.34740/kaggle/dsv/4000746
title: AutoXGB
DOI: 10.5281/zenodo.6651957
title: Corpus and list of keywords from Improving sustainable crop protection using population genetics concepts

description: Corpus extracted in April 2021 from the ISI Web of Science portal (https://www.webofscience.com) with the following request: ‘Plant AND Resistan* AND Durab*’. A first corpus of 2522 articles was built considering all publication years for this extraction. This collection was then refined by categories to remove articles outwith the scope of our search (e.g. related to durable resistant materials for constructions). We also kept only articles cited at least once. The final corpus was composed of 1783 articles from 1979 to 2021: CORPUS_plant_resistance_durability.zip List of keywords used for the network presented in the article: keywords_list.csv
description: This work was supported by grants from the French National Research Agency (ANR-18-CE32-0001, Clonix2D project; ANR-11-LABX-0002-01, Cluster of Excellence ARBRE). Méline Saubin was supported by a PhD fellowship from INRAE and the French National Research Agency (ANR-18-CE32-0001, Clonix2D project). Clémentine Louet was supported by a PhD fellowship from the Région Lorraine and the French National Research Agency (ANR-18-CE32-0001, Clonix2D project).
DOI: 10.5281/zenodo.6651956
title: Corpus and list of keywords from Improving sustainable crop protection using population genetics concepts

description: Corpus extracted in April 2021 from the ISI Web of Science portal (https://www.webofscience.com) with the following request: ‘Plant AND Resistan* AND Durab*’. A first corpus of 2522 articles was built considering all publication years for this extraction. This collection was then refined by categories to remove articles outwith the scope of our search (e.g. related to durable resistant materials for constructions). We also kept only articles cited at least once. The final corpus was composed of 1783 articles from 1979 to 2021: CORPUS_plant_resistance_durability.zip List of keywords used for the network presented in the article: keywords_list.csv
description: This work was supported by grants from the French National Research Agency (ANR-18-CE32-0001, Clonix2D project; ANR-11-LABX-0002-01, Cluster of Excellence ARBRE). Méline Saubin was supported by a PhD fellowship from INRAE and the French National Research Agency (ANR-18-CE32-0001, Clonix2D project). Clémentine Louet was supported by a PhD fellowship from the Région Lorraine and the French National Research Agency (ANR-18-CE32-0001, Clonix2D project).
DOI: 10.5281/zenodo.6911932
title: Tadnoll Brook gut content dataset

description: This dataset contains feeding interactions of the organisms in Tadnoll Brook food web.
DOI: 10.5281/zenodo.6911931
title: Tadnoll Brook gut content dataset

description: This dataset contains feeding interactions of the organisms in Tadnoll Brook food web.
DOI: 10.6084/m9.figshare.20401440
title: Data from the automatic perspective-taking study from No signs of automatic perspective-taking or its modulation by joint attention in toddlers using an object retrieval task

description: Children's demographic information, bias scores and trial information in the object search task
DOI: 10.6084/m9.figshare.20401440.v1
title: Data from the automatic perspective-taking study from No signs of automatic perspective-taking or its modulation by joint attention in toddlers using an object retrieval task

description: Children's demographic information, bias scores and trial information in the object search task
DOI: 10.6084/m9.figshare.20401434
title: Dust storm data from Lake Hurleg and Lake Qinghai.xlsx

description: ~1600 a dust storm data from Lake Hurleg and Lake Qinghai
DOI: 10.6084/m9.figshare.20401434.v1
title: Dust storm data from Lake Hurleg and Lake Qinghai.xlsx

description: ~1600 a dust storm data from Lake Hurleg and Lake Qinghai
DOI: 10.6084/m9.figshare.3850506
title: Modeling Time-Varying Effects With Large-Scale Survival Data: An Efficient Quasi-Newton Approach

description: Nonproportional hazards models often arise in biomedical studies, as evidenced by a recent national kidney transplant study. During the follow-up, the effects of baseline risk factors, such as patients’ comorbidity conditions collected at transplantation, may vary over time. To model such dynamic changes of covariate effects, time-varying survival models have emerged as powerful tools. However, traditional methods of fitting time-varying effects survival model rely on an expansion of the original dataset in a repeated measurement format, which, even with a moderate sample size, leads to an extremely large working dataset. Consequently, the computational burden increases quickly as the sample size grows, and analyses of a large dataset such as our motivating example defy any existing statistical methods and software. We propose a novel application of quasi-Newton iteration method to model time-varying effects in survival analysis. We show that the algorithm converges superlinearly and is computationally efficient for large-scale datasets. We apply the proposed methods, via a stratified procedure, to analyze the national kidney transplant data and study the impact of potential risk factors on post-transplant survival. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.14329436
title: Additional file 5 of High-dose rapamycin exerts a temporary impact on T. reesei RUT-C30 through gene trFKBP12

description: Additional file 5: Table S2. Transcriptional level of DEGs related to transporters in T. reesei RUT-C30.
DOI: 10.6084/m9.figshare.21676469
title: Geochronology and petrogenesis of the early Silurian Zeluo mafic-ultramafic intrusion, eastern Tibet: implications for the tectonic setting and evolution of the eastern Proto-Tethys Ocean

description: The Tibetan Plateau is a key region to understand the evolution of the Tethys Oceans. To better constrain the tectonic evolution of the Proto-Tethys Ocean on the western margin of the Yangtze plate, we present an integrated petrography, geochemistry, and zircon U-Pb-Lu-Hf isotope study on newly recognized early Silurian gabbro and serpentinite rocks from the eastern Yidun terrane of the Tibetan Plateau. Zircon U-Pb dating of the gabbro yields an Early Silurian age of 438.2 ± 2.8 Ma. Zircon ε<sub>Hf</sub>(t) values of 5.4 to 8.5 suggest a single-stage model age (T<sub>DM1</sub>) ranging from 729 to 858 Ma. The gabbros exhibit low total rare earth element abundances but are moderately enriched in the light rare earth elements and the large-ion lithophile elements (e.g. Rb, Ba, and Sr), and display representative negative high-field strength elemental anomalies for Nb, Ta, Zr, and Hf on spidergrams. The gabbro and serpentinites were derived from a depleted mantle-like source made of garnet-spinel lherzolite composition, from a sub-arc mantle wedge that was metasomatized by slab dehydration. Thus, the gabbro and serpentinites record an Early Silurian subduction event of the Proto-Tethys Ocean under the Yangtze plate. Furthermore, this study confirms that the Yidun terrane on the western margin of the Yangtze plate is underlined by a Precambrian crystalline basement.