cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20009428.v1
title: Genetic associations between reproductive and linear-type traits of Holstein cows in Brazil

description: ABSTRACT This study aimed to estimate heritability, genetic, and residual correlations between reproductive traits such as age at first calving, calving interval, dry period, and first service period and linear type traits measured in Holstein cows born between the years 1990 and 2008 in Brazil. The (co)variance components were estimated by restricted maximum likelihood, using the MTDFREML software. The heritability for reproductive traits and linear-type traits ranged from 0.02 to 0.03 and from 0.07 to 0.40, respectively. Estimates of genetic correlations between reproductive and linear-type traits ranged from -0.23 (top line) to 0.28 (angularity) to age at first calving, from -0.54 (final score) to 0.34 (foot angle) to calving interval, from -0.23 (angularity) to 0.56 (stature) to dry period, and from -0.52 (final score) to 0.36 (height udder) to first service period. Direct selection for any of the reproductive traits implies low genetic gains by virtue of their low heritabilities. Among the linear-type traits, the final score, chest width, top line, angularity, teat length, udder attachment, rear teat placement were highlighted as good auxiliary traits to improve reproductive efficiency of Holstein cows in Brazil. The simultaneous selection for reproductive and linear-type traits can lead a higher genetic progress in the reproductive traits.
DOI: 10.6084/m9.figshare.22257739.v1
title: ENCODE_HepG2_eCLIP_peak_bed

description: HepG2 eCLIP peak files curated from ENCODE.
DOI: 10.6084/m9.figshare.26488216.v5
title: Pre-VFall: Vision Sensor Simulated Early Signs of Fall Dataset

description: The Pre-VFall dataset is a multimodal dataset. It includes images, keygradient vector magnitude features, and keygradient vector direction features available to researchers for advancing the robustness of fall detection systems. The dataset is intended for use by the machine learning community to identify pattern cues that signal the onset of falls. The dataset provides new insights into how frailty states in older adults may serve as precursors to fall incidents. This will help improve the robustness of fall detection systems, ensuring they can effectively account for irregularities in movement and behavior that indicate early signs of fall. The dataset consists of around 22K images selected from recorded videos of nine healthy young adult participants. Each participant's videos and corresponding images are organized in folders named after each video session as follows: confusion_delirium, confusion_nph, dizzy_fall_forward, dizzy_fall_side, weakness_fall_forward, and weakness_fall_side. It should be noted that weakness and dizziness sessions were succeeded by falls and so included fall in their labels. The terms “forward” and “side” in some labels indicate the direction of fall. Each folder contains videos recorded with RGB cameras positioned at 90° and 45° with forward-view and side-view cameras included to identify the angle of the camera. The frames of the videos were manually selected and sorted into their respective categories. For example, the pre-fall activities such as weakness, dizziness, delirium-confusion, and NPH-confusion were categorized as “Abnormal,” while states of falling and actual falls were categorized as “Fall.” Therefore, this dataset encompasses three activity classes: normal, abnormal, and fall.
DOI: 10.6084/m9.figshare.12643328.v1
title: Fig. 8

description: Matlab files
DOI: 10.6084/m9.figshare.22691410.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.3520844.v1
title: Appendix A. Model and predictor variable descriptions.

description: Model and predictor variable descriptions.
DOI: 10.17632/fnk8pmp2yz
title: The ICAnnoLncRNA Pipeline for a Long-Non-coding-RNA Search and Annotation in Transcriptomic Data: an Application to Maize

description: Long non-coding RNAs (lncRNAs) are RNA molecules longer than 200 nucleotides that do not encode proteins. Experimental studies have shown the diversity and importance of lncRNA functions in plants. To expand knowledge about lncRNAs in other species, computational pipelines that allow for standardised data-processing steps in a mode that does not require user control up to the final result were actively developed recently. These advancements enable wider functionality for lncRNA data identification and analysis. In the present work, we propose the ICAnnoLncRNA pipeline for automatic identification, classification and annotation of plant lncRNAs in transcriptomic sequences assembled from high-throughput RNA sequencing (RNA-seq) data.
In the present work, we proposed a pipeline ICAnnoLncRNA for automatic prediction, classification, and annotation of plant lncRNAs. We analysed sequences from 15 maize transcriptome libraries from different plant tissues/organs.
DOI: 10.6084/m9.figshare.28822121.v1
title: GenAI for Learning Effectiveness

description: <b>Exploring the effects of generative artificial intelligence on learning effectiveness through motivations</b>
DOI: 10.6084/m9.figshare.4595323.v1
title: Indoor-Outdoor dataset

description: The data set used in paper "Indoor-outdoor image classification using dichromatic reflection model and Haralick features" , author:A. Nadian-Ghomsheh.
DOI: 10.6084/m9.figshare.7504448.v4
title: Global Aridity Index and Potential Evapotranspiration (ET0) Climate Database v3

description: The Global Aridity Index (Global-AI) and Global Reference Evapo-Transpiration (Global-ET0) datasets provided in Version 3 of the Global Aridity Index and Potential Evapo-Transpiration (ET0) Database (Global-AI_PET_v3) provide high-resolution (30 arc-seconds) global raster data for the 1970-2000 period, related to evapotranspiration processes and rainfall deficit for potential vegetative growth, based upon implementation of the FAO-56 Penman-Monteith Reference Evapotranspiration (ET<sub>0</sub>) equation. Aridity Index represent the ratio between precipitation and ET<sub>0</sub>, thus rainfall over vegetation water demand (aggregated on annual basis). Under this formulation, Aridity Index values increase for more humid conditions, and decrease with more arid conditions. The Aridity Index values reported within the <i>Global-AI</i> geodataset have been multiplied by a factor of 10,000 to derive and distribute the data as integers (with 4 decimal accuracy). This multiplier has been used to increase the precision of the variable values without using decimals. The Readme File is provided with a detailed description of the dataset files, and the following article for a description of the methodology and a technical validation.The Global-AI_PET_v3 datasets are provided for non-commercial use in standard GeoTiff format, at 30 arc seconds or ~ 1km at the equator.<br>
DOI: 10.6084/m9.figshare.12630482.v1
title: Supplemental Table S1

description: Changes in scores in the SF-36v2 questionnaire from baseline after 3 and 6 weeks of treatment.
DOI: 10.6084/m9.figshare.26763175.v1
title: Supplementary Material for: Tumor Treating Fields (TTFields) Therapy and Lomustine Chemotherapy for the Treatment of Unresectable Progressive Glioblastoma

description: Introduction: Tumor Treating Fields (TTFields) therapy used concomitantly with maintenance temozolomide through second progression after radio-chemotherapy, is associated with improved survival outcomes compared to adjuvant temozolomide alone in individuals with newly-diagnosed (nd) glioblastoma (GBM). Lomustine (CCNU) is frequently used as monotherapy or concomitant with other chemotherapy regimens as second-line treatment for recurrent GBM (rGBM). 
Case presentation: We report a 59-year-old female patient diagnosed with MGMT-promoter methylated (mMGMT), isocitrate dehydrogenase-wildtype (IDHwt) GBM (World Health Organization Grade 4) who received TTFields therapy concomitant with first- and second-line chemotherapy following partial resection. The patient experienced tumor pseudoprogression/progression after three cycles of maintenance temozolomide/TTFields therapy and again after a further two cycles of procarbazine/CCNU/TTFields therapy, and was then switched to CCNU/TTFields therapy. During 18 months of treatment with concomitant TTFields therapy and CCNU, the patient experienced regression/reduction of both tumor volume and perifocal edema with tolerable hematotoxicity, and was able to maintain a high rate of TTFields therapy usage. The patient ultimately died after developing chemotherapy-related acute myeloid leukemia. 
Conclusion: This patient case is reflective of the EF-14 outcome using TTFields therapy beyond first progression concomitantly with chemotherapy. The observations from this case suggest that TTFields therapy concomitant with CCNU is a valuable treatment modality in patients with GBM, in this context.
DOI: 10.17632/3nn5t35j8s
title: Data for: Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning

description: This is the data repo for manuscript, Voltage imaging reveals circuit computations in the raphe underlying serotonin-mediated motor vigor learning (https://www.biorxiv.org/content/10.1101/2024.09.15.613083v1).
DOI: 10.17632/t9jbz6hktn
title: Data for: Predicting emotion reactions to news articles in social networks

description: Corpus of Spanish news articles with annotated emotional reaction distribution from tweet responses. 288 news articles, published from 01-01-20015 to 01-01-2017, were collected from three Mexican newspapers (El Universal, La Jornada and Excelsior). The annotation task was developed by four different annotators during a three month period and they tagged the emotions expressed in tweet responses to each news article. Counting of the emotions expressed in tweet responses was used to determine the distribution of these emotions in the news articles.
DOI: 10.17632/wctcbp5z4h
title: The Block Relocation Problem with Appointment Scheduling (BRPAS)

description: This Data set is used from different published papers in container/block relocation problems. The used instances are further processed to fit the research topic of "The Block Relocation Problem with Appointment Scheduling (BRPAS)". In the BRPAS, we introduce a new optimization problem that studies the container relocation in the container terminal under the appointment scheduling for container pickup operations. Since we are introducing a new problem, which is different from the existing work in the literature, we used some data sets from existing published work and modified them to fit our approach. However, the developed instances still can be comparable to the existing original instances. the uploaded files are named with authors' names of the original data set.
DOI: 10.6084/m9.figshare.14258432.v3
title: Norfish 04 Scottish Herring Fishery 1466–1790

description: The Scottish Herring Fishery was based largely in the North Sea along the Scottish coastline but included elements from the Atlantic waters on the west coast of Scotland as well. Some fishing may have occurred in the northern parts of the Irish Sea as well. While the fishery was on a comparatively small scale when compared with the industrial giants of the Flemish and Dutch fisheries, it was nevertheless a large feature of the Scottish fishing effort and accounted for important exports as well as domestic provision of nutrition. Salmon and cod fishing were also important aspects of the overall fishing effort, but herring was arguably the most important fish export
DOI: 10.6084/m9.figshare.3522380.v1
title: Appendix B. The numbers of ants captured in pitfall traps.

description: The numbers of ants captured in pitfall traps.
DOI: 10.6084/m9.figshare.25624338.v1
title: Trade Induces Exposure to Extreme Heat at Workplaces in Developing Economies

description: The code for study Trade Induces Exposure to Extreme Heat at Workplaces in Developing Economies.
DOI: 10.6084/m9.figshare.6704519.v1
title: Translation and cultural validation of clinical observational scales – the Fugl-Meyer assessment for post stroke sensorimotor function in Colombian Spanish

description: <b>Purpose:</b> Fugl-Meyer Assessment (FMA) is the most widely used and recommended clinical scale for evaluation of sensorimotor impairment post stroke, but an official Spanish version is not available today. This study aimed to establish methodological structure for translation and cultural adaptation process and perform a transcultural validation of the upper and lower extremity FMA to Colombian Spanish. <b>Methods:</b> Procedures included forward and backward translation, step-wise reviewing by bilingual and professional experts to ensure conceptual and semantic equivalence. Validation included a pilot evaluation of item-level agreement on 10 individuals with stroke at the Central Military Hospital of Colombia. <b>Results:</b> Comprehensive step-wise procedure for transcultural validation was established. Low agreement (less than 70%) was detected for items assessing arm movements within synergies and for coordination/speed subscale. All points of disagreement were systematically reviewed and agreed upon when drafting the final version of the Spanish FMA. <b>Conclusions:</b> Use of FMA will allow unified description of stroke severity and motor recovery in Spanish speaking countries. This will open up possibility to compare stroke and rehabilitation outcomes with other countries and regions world-wide. Comprehensive methodological procedures provided can facilitate introduction of well-established clinical scales in other languages.Implications for RehabilitationThe Fugl-Meyer Assessment (FMA) of upper and lower extremity is the most used and recommended clinical scale for evaluation of sensorimotor impairment after stroke.The Spanish version of FMA, validated in this study, is now first time available for use in research and clinical practice.Use of FMA will allow unified description of stroke severity and motor recovery in Spanish speaking countries, which in turn opens up possibility to compare stroke and rehabilitation outcomes with other countries and regions world-wide. The Fugl-Meyer Assessment (FMA) of upper and lower extremity is the most used and recommended clinical scale for evaluation of sensorimotor impairment after stroke. The Spanish version of FMA, validated in this study, is now first time available for use in research and clinical practice. Use of FMA will allow unified description of stroke severity and motor recovery in Spanish speaking countries, which in turn opens up possibility to compare stroke and rehabilitation outcomes with other countries and regions world-wide.
DOI: 10.6084/m9.figshare.22463218.v1
title: Supplemental data_Table 1_AJP.xlsx

description: RNAseq Data <br> Supplemental Data Table 1: <strong>All of the genes that significantly changed during PRA</strong> <br> Supplemental Data Table 2: <strong>All of the genes that significantly changed in </strong><em><strong>IL-6-/-</strong></em> <strong>PRA versus WT PRA</strong>
DOI: 10.6084/m9.figshare.24086148.v2
title: Annual dengue case notifications in 57 dengue endemic Colombian cities, 2008-2023

description: This dataset holds annual dengue case notifications and population for 57 Colombian cities classified as dengue endemic, for 2008-2023. It underlies the visualisation of annual dengue case incidence in the thee Wolbachia-treated cities of Bello, Medellin and Itagui compared with other endemic cities, pre and post Wolbachia implementation, reported in the paper by Velez et al "Reduced dengue incidence following city-wide wMel Wolbachia mosquito releases throughout three Colombian cities: interrupted time series analysis and a prospective case-control study" published in PLoS Neglected Tropical Diseases in 2023.Dengue case data source: https://portalsivigila.ins.gov.co/Paginas/Buscador.aspxPopulation data source: https://www.dane.gov.co/index.php/estadisticas-por-tema/demografia-y-po
DOI: 10.6084/m9.figshare.24855294.v1
title: Supplemental Tables for "Machine learning enables identification of a novel yeast galactose utilization pathway"

description: Supplemental tables for the paper "Machine learning enables identification of a novel yeast galactose utilization pathway" by Marie-Claire Harrison et al. 2024.
DOI: 10.17632/42d7m52ytk
title: Solving the Schrödinger equation for bound states

description: Title of program: SCR2 Catalogue Id: ACDQ_v1_0 Nature of problem SCR2 calculates energy levels and wave functions of the rotational symmetric Schrodinger equation for a given potential using a simple and accurate method. Versions of this program held in the CPC repository in Mendeley Data ACDQ_v1_0; SCR2; 10.1016/0010-4655(85)90005-0 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/kffzh3kjzz
title: The Effect of Agricultural Cooperative Membership on Women’s Empowerment: A Case of Rural Ashanti, Ghana

description: The main objective of this study was to assess women’s empowerment with the Women Empowerment in Agricultural Index (WEAI) tool and to examine the effect of membership in agricultural cooperatives on women’s empowerment by employing a propensity score matching model and endogenous treatment regression model. We interviewed 106 women farmers (75 cooperative members and 31 non-members) from the rural Ashanti region of Ghana through structured questionnaire in 7 districts. The study showed a statistically significant relationship between agricultural cooperative membership and empowerment levels among female farmers. All interviewed women members of cooperatives had higher empowerment scores in four out of five domains than non-members. The dataset is in two views. The labelled show the value labels (e.g. marital status = widowed) and the values sheet shows the numbers that were assigned to the labels (e.g. marital status = 6 [which is widowed].
DOI: 10.6084/m9.figshare.21813795.v2
title: Global soil nitrogen cycle pattern and nitrogen enrichment effects: tropical versus subtropical forests

description: Global soil nitrogen cycle pattern and nitrogen enrichment effects: tropical versus subtropical forests
DOI: 10.6084/m9.figshare.23537397.v1
title: Effectiveness of peer-assisted teaching of medical English skills to nonnative English-speaking medical students.xlsx

description: A medical English conversation course was conducted at the Faculty of Medicine, Damascus University by a group of students, and targeted participants were intermediate level fellow students from the same program. A longitudinal study was carried out between start and end of March 2019 to assess changes in self-assessment of English language skills among course participants. Pre- and post-course appraisal involved a review of previous experience with medical English language, a self-assessment of five English language skills, and an objective measurement of medical English knowledge. In addition, participants were requested to respond to a set of statements related to the importance and the usefulness of peer-assisted teaching of medical English skills. Paired-sample Student <em>t</em>-test was used to compare pre- and post-course appraisal results.
DOI: 10.6084/m9.figshare.28861274.v1
title: DataSet for the article Beyound Credibility Understanding the Mediators Between Electronic Word-of-Mouth and Purchase Intention

description: Data source for the article entitled "Beyond Credibility: Understanding the Mediators Between Electronic Word-of-Mouth and Purchase Intention".
DOI: 10.6084/m9.figshare.11295971.v1
title: C1_C2_16S_rRNA_Iontorrent.csv16s rRNA sequencing data Gnotobiotic mice

description: 14 samples from C1 and C2 colonized mice were sequenced for the V5-V6 region of 16S rRNA genes. 56 samples from C3, C4, C5, C6, OligoMM12, KB1+YL58, YL44+YL58 and YL44+KB1+YL58 colonized mice and 91 samples from young OligoMM12 colonized mice were sequenced for V4 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM platform (V5-V6) and Illumina (V4) platform.14 samples from C1 and C2 colonized mice were sequenced for the V5-V6 region of 16S rRNA genes. 56 samples from C3, C4, C5, C6, OligoMM12, KB1+YL58, YL44+YL58 and YL44+KB1+YL58 colonized mice and 91 samples from young OligoMM12 colonized mice were sequenced for V4 region of 16S rRNA genes. Sequencing was performed using Ion PGMTM platform (V5-V6) and Illumina (V4) platform.
DOI: 10.6084/m9.figshare.1247634.v5
title: SMASH – semi-automatic muscle analysis using segmentation of histology: a MATLAB application

description: SMASH is composed of a set of functions enabling the user analyze aspects of histological muscle sections. Image segmentation: identifies potential muscle fibers. Fiber filter: removes non fiber elements. Fiber properties computes parameters related to fiber size. Fiber type: determines which fibers are positively stained within an image. Central nucleation: determines which fibers have central nuclei within an image. Object counter: identifies non fiber objects within an image. SMASH Stand Alone requires MATLAB Compiler Runtime (MCR) version R2014a (8.3) which is freely available from Mathworks (http://www.mathworks.com/products/compiler/mcr/). SMASH App requires MATLAB version R2014a (8.3) or later with the Image Processing Toolbox.
DOI: 10.17632/t9mrmfwhjb
title: THE CONSTITUTIONAL REVIEW SYSTEM OF OROMIA AND TIGRAY REGIONAL STATES AND THE BASIC RULES OF FAIR TRIA

description: Ethiopia has ratified several human rights instruments that guarantee the right to a fair trial. The federal and regional government organs in the country are bound by the provisions of these instruments. This article examines the compatibility of the constitutional review systems in Oromia and Tigray Regional States with the basic rules of fair trial such as the right to a public
hearing before a competent, independent and impartial court or tribunal. Both Oromia and Tigray Regional States empower their respective Constitutional Interpretation Commissions (CIC) and the Councils of Constitutional Inquiry (CCI) to entertain constitutional disputes. Each organ in both regional states is characterized by a centralized non-judicial model of review system. There are several factors that make each reviewing institution less compatible with the elements of the basic rules of fair trial. A careful redesigning of the institutions and recognizing the guarantees of relevant human right instruments adopted by the country is primarily recommended.
DOI: 10.6084/m9.figshare.24619215.v1
title: Adiantum capillus-veneris peptide sequences

description: Peptide sequences file for maidenhair fern (<i>Adiantum capillus-veneris</i>) genome. Please cite the corresponding paper - <b><i>The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences,</i></b><b><i> </i></b>when using the data.