cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gc2d8cp982
title: Supporting Information for [Timing of India-Asia suturing -evidence from remnant peripheral foreland basin in Xigaze, South Tibet]

description: The Yarlung-Zangpo Foreland Basin System records important information about the initial India-Asia continental collision. In the central-eastern Yarlung-Zangpo Suture Zone (YZSZ), the absence of robust foreland basin system has hindered understanding of the initial timing of India-Asia collision along strike. To address this issue, a remnant foredeep and wedge-top deposits of the foreland basin system are reported from the Tethyan Himalaya sequence and the YZSZ in Xigaze area. The foredeep is defined by the olistostrome of the Zongzhuo Formation, which consists of matrix and blocks including chert, limestone, sandstone and volcanic rocks. Based on the matrix, the Zongzhuo Formation is divided into two units. The lower member is the Zhilong unit composed of black shale and thin layers of siltstone in the matrix. The upper member, the Yongla unit, has distinct red shale or yellow-green siliceous mudstone in the matrix with interbedded siltstone and limestone. The Zongzhuo Formation is dated to 65 - 57 Ma by detrital zircon U-Pb chronology and radiolarian assemblages. In the YZSZ, the Puxia and Jiabi units are interpreted here as wedge-top deposit, consisting of mudstone matrix and exotic blocks such as sandstone, chert and limestone. Sandstone blocks from both units have maximum depositional ages (MDAs) of ca. 65 - 59 Ma. Detrital zircon provenance analysis and trace element data exclude an intra-oceanic arc and point to Gangdese arc and recycled accretionary wedge in the suture zone. Therefore, we proposed that the initial collision between India and Asia occurred at 65 Ma in the central-eastern YZSZ.
DOI: 10.6084/m9.figshare.5121139.v1
title: Supplementary Material for: Polyunsaturated Fatty Acids, DNA Repair Single Nucleotide Polymorphisms and Colorectal Cancer in the Singapore Chinese Health Study

description: Animal and in vitrostudies support a role for polyunsaturated fatty acids (PUFAs) in colon carcinogenesis; however, the epidemiological evidence is inconclusive. Recently, we investigated their role within the Singapore Chinese Health Study, a population-based cohort of Singapore Chinese men and women. We reported that a high intake of marine n–3 PUFAs was associated with an increased risk of colorectal cancer (CRC). Oxidation of PUFAs incorporated into cell membranes generates lipid hydroperoxides, which can be mutagenic. In this report, we investigated whether single nucleotide polymorphisms (SNPs) in DNA repair genes modified the effect of PUFAs on CRC risk using a nested case-control study within the Singapore Chinese Health Study. We genotyped 1,181 controls and 311 cases (180 colon and 131 rectal cancer) for SNPs in the <i>XRCC1</i> (Arg194Trp, Arg399Gln), <i>OGG1 </i>(Ser326Cys), <i>PARP </i>(Val762Ala, Lys940Arg), and <i>XPD</i> (Asp312Asn, Lys751Gln) genes. We observed that the <i>PARP</i> Val762Ala SNP modified the association between marine n–3 PUFA and rectal cancer risk, with no evidence of interaction among colon cancer (heterogeneity test p = 0.003). Our results suggest a positive association between high intake of marine n–3 PUFA and rectal cancer risk among carriers of at least one <i>PARP </i>codon 762 Ala allele (odds ratio = 1.7, 95% confidence interval = 1.1–2.7).
DOI: 10.6084/m9.figshare.24242812.v1
title: Data for Fig. 1B

description: GLS profiles of isolates of the five Jena <i>A. thaliana</i> populations
DOI: 10.17632/b3nwnp6pyd
title: 10X single cell RNA and TCR sequencing of CD45RO+ CD8+ T cells in AS and HC

description: These folders contain raw data generated by the 10X Chromium single cell sequencing platform, necessary to reproduce figures generated in the manuscript entitled "PD-1+TIGIT+LAG-3+ CD8+ T cells with features of exhausted phenotype characterize chronic joint inflammation in ankylosing spondylitis"
DOI: 10.6084/m9.figshare.24305251.v1
title: Erythrophleum_fordii_Data_file_16_Predicted genes - translated sequences

description: Genome assembly of Erythrophleum fordii.
DOI: 10.17632/trss2brb2k
title: Instagram Research Data (2010-2019)

description: The Instagram reseach & publication dataset, which was indexed by Scopus from 2010 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.6084/m9.figshare.16571268.v1
title: GEE scripts of app and analysis

description: Javascripts related to LULC classification and Coal fire detection. Javascripts of application along with the folder structure.<br>
DOI: 10.6084/m9.figshare.28826414.v1
title: Contact Observations from an Intensive Care Unit - Supplementary

description: Little fine-grained, empirical motion and interaction data is available for working hospital environments (refer to our paper for more information)
DOI: 10.17632/s5js4r52zb
title: A C-code for the double folding interaction potential of two spherical nuclei

description: Abstract We present a C-code designed to obtain the nucleus–nucleus potential by using the double folding model (DFM) and in particular to find the Coulomb barrier. The program calculates the nucleus–nucleus potential as a function of the distance between the centers of mass of colliding nuclei. The most important output parameters are the Coulomb barrier energy and the radius. Since many researchers use a Woods–Saxon profile for the nuclear term of the potential we provide an option in our code for f... Title of program: DFMSPH Catalogue Id: AEFH_v1_0 Nature of problem The code calculates in a semimicroscopic way the bare interaction potential between two colliding spherical nuclei as a function of the center of mass distance. The height and the position of the Coulomb barrier are found. The calculated potential is approximated by a conventional Woods-Saxon profile near the barrier. Dependence of the barrier parameters upon the characteristics of the effective NN forces (like, e.g. the range of the exchange part of the nuclear term) can be investigated. Versions of this program held in the CPC repository in Mendeley Data AEFH_v1_0; DFMSPH; 10.1016/j.cpc.2009.09.007 AEFH_v2_0; DFMSPH14; 10.1016/j.cpc.2016.04.012 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.28219985.v1
title: The p3 peptides (Aβ<sub>17-40/42</sub>) rapidly form amyloid fibrils that cross-seed with full-length Aβ

description: excel file of data from figures
DOI: 10.6084/m9.figshare.14790681.v1
title: Supplementary Material for: Mortality in Patients with Brainstem Cavernous Malformations

description: <b><i>Objective:</i></b> Brainstem cavernous malformations (BSCM)-associated mortality has been reported up to 20% in patients managed conservatively, whereas postoperative mortality rates range from 0 to 1.9%. Our aim was to analyze the actual risk and causes of BSCM-associated mortality in patients managed conservatively and surgically based on our own patient cohort and a systematic literature review. <b><i>Methods:</i></b> Observational, retrospective single-center study encompassing all patients with BSCM that presented to our institution between 2006 and 2018. In addition, a systematic review was performed on all studies encompassing patients with BSCM managed conservatively and surgically. <b><i>Results:</i></b> Of 118 patients, 54 were treated conservatively (961.0 person years follow-up in total). No BSCM-associated mortality was observed in our conservatively as well as surgically managed patient cohort. Our systematic literature review and analysis revealed an overall BSCM-associated mortality rate of 2.3% (95% CI: 1.6–3.3) in 22 studies comprising 1,251 patients managed conservatively and of 1.3% (95% CI: 0.9–1.7) in 99 studies comprising 3,275 patients with BSCM treated surgically. <b><i>Conclusion:</i></b> The BSCM-associated mortality rate in patients managed conservatively is almost as low as in patients treated surgically and much lower than in frequently cited reports, most probably due to the good selection nowadays in regard to surgery.
DOI: 10.6084/m9.figshare.28811915.v1
title: Heatwave and sediment - multistressor experiment

description: Expt_Temperature and Expt_Turbidity - dataset containing data of Temperature and Turbidity measured throughout both experiments.Tfin_Survival - dataset containing survival probability of fish from both experiments.Tfin_MO2 - dataset containing oxygen consumption of fish from both experiments.Tfin_Weight - dataset containing initial and final weight of fish from both experiments.
DOI: 10.6084/m9.figshare.5353846.v1
title: Supplementary Material for: An Ecological Study of the Association between Air Pollution and Hepatocellular Carcinoma Incidence in Texas

description: <strong><em>Introduction:</em></strong> Primary liver cancer is a significant cause of cancer-related death in both the United States and the world at large. Hepatocellular carcinoma comprises 90% of these primary liver cancers and has numerous known etiologies. Evaluation of these identified etiologies and other traditional risk factors cannot explain the high incidence rates of hepatocellular carcinoma in Texas. Texas is home to the second largest petrochemical industry and agricultural industry in the nation; industrial activity and exposure to pathogenic chemicals have never been assessed as potential links to the state's increased incidence rate of hepatocellular carcinoma. <b><i>Methods:</i></b> The association between the county-level concentrations of 4 air pollutants known to be linked to liver cancer, vinyl chloride, arsenic, benzene, and 1,3-butadiene, and hepatocellular carcinoma rates was evaluated using nonparametric generalized additive logistic regression and gamma regression models. Hepatocellular carcinoma incidence rates for 2000-2013 were evaluated in comparison to 1996 and 1999 pollution concentrations and hepatocellular carcinoma rates for the subset of 2006-2013 were evaluated in comparison to 2002 and 2005 pollution concentrations, respectively. <b><i>Results:</i></b> The analysis indicates that the relationship between the incidence of liver cancer and air pollution and risk factors is nonlinear. There is a consistent significant positive association between the incidence of liver cancer and hepatitis C prevalence rates (gamma all years, <i>p</i> &lt; 0.05) and vinyl chloride concentrations (logistic 2002 and 2005, <i>p</i> &lt; 0.0001; gamma 2002 and 2005, <i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> This study suggests that vinyl chloride is a significant contributor to the incidence of liver cancer in Texas. The relationship is notably nonlinear. Further, the study supports the association between incidence of liver cancer and prevalence of hepatitis B.
DOI: 10.17632/nr8cvm46y3
title: Data for: Irrational Preferences, Asset Prices and Economic Growth

description: Data and R-Code to replicate the main results of Dierkes at al. (2018). Dierkes, M., Germer, S., Sejdiu, V. (2018). Irrational Preferences, Asset Prices and Economic Growth, Working Paper.
DOI: 10.21233/1cv0-bd57
title: Ningbo  ostracode surface sample dataset

description: Raw data for the Ningbo  ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.13502433.v1
title: Phosphogypsum dataset, storage

description: The dataset was collected from field observation points and included 21 soil samples with 30 measured parameters in order to evaluate influence of phosphogypsum storage (PG) on soil chemical, biological and ecotoxicological properties. Samples were collected from 1 point at background location, 3 points near PG-storage, 3 points at accumulation site (river coastal zone). From each point samples were collected in triplicate.
DOI: 10.17632/ccbcxz87zp
title: WDR33 alternative polyadenylation is dependent on stochastic poly(A) site usage and splicing efficiencies

description: Transcripts from the human WDR33 gene, which encodes a central component of the mRNA polyadenylation (PA) machinery, are subject to alternative polyadenylation (APA) within promoter-proximal introns/exons. This APA, which itself involves usage of multiple PA sites, results in the production of two non-canonical protein isoforms, V2 and V3, that are functionally completely unrelated to the full-length protein, with roles in innate immunity. The mechanism and regulation of WDR33 APA are unclear. Here, we report that levels of the PA factor CFIm25 modulate V2 and V3 expression, and that PA site usage of both V2 and V3 varies in distinct immune responses. Using newly developed assays to measure splicing and PA site strength, we show that splicing of V2-associated intron 6 is inefficient, allowing V2 to be produced using weak PA sites. Usage of V3’s strong PA sites, on the other hand, is relatively low, reflecting the high efficiency of intron 7 splicing coupled with dependency on usage of an alternative 3’ splice site within the intron. Overall, our findings demonstrate that usage of WDR33 alternative PA sites is stochastic, dependent on a complex interplay between splicing and PA, and thus provide new insights into mechanisms underlying APA.
DOI: 10.17632/ykdzhzrsvf
title: Figure 1

description: CT of the temporal bones without contrast demonstrating diffuse, smooth ossification of the auricles bilaterally.
DOI: 10.17632/ttdjzf2t8d
title: The role of threat level and intolerance of uncertainty in extinction

description: Data in wide and long format
DOI: 10.6084/m9.figshare.19441766.v1
title: breast cancer

description: Cancer affects people of different ages, ethnicities and sex. Collecting and storing data from these people assists in the development, understanding and analysis of statistics on the disease. In Brazil, the oncology hospital units, whichreceive patients diagnosed with cancer, store the information in a national database, called Hospital Registry of Cancer (RHC). Were selected the folowing variables: age, sex, race, alcohol consumption, tobacco consumption and cancer staging.
DOI: 10.6084/m9.figshare.28596398.v1
title: Validation Benchmark Study F1000-Research (Data)

description: Analysis results and data used to perform the benchmarking study entitled as R data objects.<b>Leveraging Synthetic Data to Validate a Benchmark Study for Differential Abundance Tests for 16S Microbiome Sequencing Data</b>The study protocol is the following:Kohnert, E., & Kreutz, C. (2025). Computational study protocol: leveraging synthetic data to validate a benchmark study for differential abundance tests for 16s microbiome sequencing data. <i>F1000Research</i>, <i>13</i>, 1180. https://f1000research.com/articles/13-1180The code used to generate this is available at https://github.com/kreutz-lab/ValidationBenchmarkStudyF1000Each RDS file contains the so called data_to_compare object, which is a hirarchical list object containing the experimental data, simualted data, results of the DA analyses as well as other calculations and information. Some information is only available in a compressed form. Use bs_decompress() from our github repository for de-compression.
DOI: 10.17632/tdjhjbnwbr
title: Cowpeas processing

description: Evaluation of various processing methods on cowpeas (Vigna unguiculata) used as a protein source for feeding growing finishing pigs
DOI: 10.6084/m9.figshare.3181132.v4
title: Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes) - Concatenated DNA sequence alignments

description: Phylip format concatenated alignments for each missing data threshold<br>
DOI: 10.17632/9k3rc2pgwv
title: Core Articles

description: This repository contains the core articles utilized in my thesis research, along with the dataset analyzed using the Web of Science platform.
DOI: 10.17632/j6dtbc96xx
title: Uncropped Western Blots: for a manuscript demonstrating STING restriction of noroviruses

description: This dataset contains uncropped western blot scans in a single .pdf file for the paper titled "Leaked genomic and mitochondrial DNA contribute to the host response to noroviruses in a STING-dependent manner."
DOI: 10.17632/s6kdt7pc2j
title: Data and codes for "Beyond NUE: A focus on true nitrogen gains in cereals"

description: Source data and code supporting the manuscript "Beyond NUE: A focus on true nitrogen gains in cereals" based on maize, sorghum, and barley datasets.

README (README.txt). References, sources for the reviewed dataset.

Dataset S1 (rev_dataset.xlsx). Review data on NUE related traits for maize, sorghum, and barley cultivars from different decades of commercial release collected from published literature. Missing values or information of studies are represented by “n/a” in the data. References of traits and variables included in the data are described in a separate sheet within the XLSX file.

Dataset S2 (analysisR.pdf). R code for data processing, analysis, and visualization.
DOI: 10.6084/m9.figshare.22269565.v1
title: fores_woodprocess_merchant.tif

description: fores_woodprocess_merchant.tif
forestry residues from the wood exploitation and process of commercial wood
DOI: 10.17632/82m69jfv5s
title: Developing a coupled water and salt balance model for a hypersaline lake: Case study of Lake Urmia

description: This database includes the row data used in the study "Developing a coupled water and salt balance model for a hypersaline lake: Case study of Lake Urmia"
DOI: 10.17632/84ky2s8h6m
title: Energy Consumption, Economic Growth, and Trade Openness in SADC Countries

description: Energy Consumption (ENCO) is the percentage of the population with access to electricity. GDP Per Capita (YCAP) represents the average economic output per person, adjusted for inflation, in constant US dollars. Trade Openness (TROP) represents trade as a percentage of GDP, indicating a country's trade openness. The Population (POP) variable represents a country's population growth, which may impact energy consumption. Urban population growth (URBP) represents the annual increase in the urban population. Education (EDU) as a percentage of government spending is determined by the government's education spending. Gross fixed capital formation (INV) is a proportion of GDP. Exchange Rate (EXR) is the price level of purchasing power parity (PPP) to market exchange rate conversion factor. The World Bank's Worldwide Governance Indicators are utilised to determine Political Stability (POL).
DOI: 10.21233/kkvm-g917
title: Miyagawa ostracode surface sample dataset

description: Raw data for the Miyagawa ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.25772358.v1
title: Supplementary Material for: Frailty in midlife as a predictor of changes in body composition from midlife into old age: a longitudinal birth cohort study

description: Introduction: Few studies have investigated the association between frailty and subsequent body composition.

Methods: We performed separate linear mixed model analyses to study the associations between changes in the participants frailty status assessed by a frailty index (FI) and subsequent body mass index (BMI), lean mass index (LMI), fat mass index (FMI), and FMI to LMI-ratio values assessed on three occasions over 17 years. The analyses were carried out among 996 participants spanning from age 57 to 84 years.

Results: With advancing age, LMI and BMI decreased, whereas FMI and FMI to LMI -ratio increased. Participants with ‘stable frailty’, followed by those with ‘increasing frailty’ experienced faster decreases in LMI and faster increases in FMI and FMI to LMI -ratio values from midlife into old age relative to those in the group ‘stable not frail’. Contrastingly, those in the highest third of absolute annual increase in FMI and FMI to LMI -ratio became more frail faster from midlife into old age relative to those in the lowest third.

Conclusions: We found evidence of an adverse health outcome of frailty where lean indices declined faster and fat indices and fat to lean -ratios increased faster from midlife into old age. The changes resembled those that occurred with aging, but at a faster pace. The relationship between body composition and frailty is likely bidirectional, where high or increasing levels of fat are associated with the risk of becoming more frail earlier, but where a longer duration of frailty may increase the risk of faster age-related changes to body composition.
DOI: 10.6084/m9.figshare.26300167.v1
title: <b>Statistical Dataset Supporting the</b><b> Review Paper of </b><b>International Trade Network Analysis</b>

description: The dataset contains statistical data of International Trade Network (ITN) literature from 2003 to 2023. It includes the data sources, research content, and citation counts for each piece of literature (01_Comprehensive Statistics.xlsx). Additionally, for structure prediction (02_Structure Prediction.xlsx) and correlation analysis (03_Correlation Analysis.xlsx), a detailed classification of methodologies and analytical perspectives is provided. Finally, for each data source, we have compiled the total citation counts (04_citations_of_data.xlsx) and the total number of publications (05_publications_of_data.xlsx).
DOI: 10.17632/xdfxcwdm45
title: Data for: Assessing land-based mitigation implications for biodiversity

description: Supplementary material containing additional data in the form of tables for the manuscript "Assessing land-based mitigation implications for biodiversity"
DOI: 10.6084/m9.figshare.28359710.v1
title: full_ppi_edgelist.csv

description: Human PPI network edgelist from STINGdb v12.0
DOI: 10.6084/m9.figshare.7765310.v3
title: Teams

description: If you use these data cite the following paper: <br><br>- Pappalardo et al., (2019) <b>A public data set of spatio-temporal match events in soccer competitions</b>, Nature Scientific Data 6:236, https://www.nature.com/articles/s41597-019-0247-7<br><br>This dataset describes all the soccer teams in seven prominent soccer competitions (Italian, Spanish, German, French and English first divisions, World Cup 2018, European Cup 2016). It consists of the following fields:<br>- <b>city</b>: the city where the team is located. For national teams it is the capital of the country; <br>- <b>name</b>: the common name of the team;<br>- <b>area</b>: information about the geographic area associated with the team;<br>- <b>wyId</b>: the identifier of the team, assigned by Wyscout;<br>- <b>officialName</b>: the official name of the team (e.g., Juventus FC);<br>- <b>type</b>: the type of the team. It is "club" for teams in the competitions for clubs and "national" for the teams in international competitions;<br>
DOI: 10.17632/dtbjcr7s5h
title: Data for: A new Perspective to Promote Low-carbon Consumption: The Influence of the Reference Group

description: Data information of 351 questionnaires.