cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16943539
title: Additional file 3 of Bovine milk somatic cell transcriptomic response to Staphylococcus aureus is dependent on strain genotype

description: Additional file 3. All significantly overrepresented gene ontology (Table S3) and KEGG (Table S4) pathways derived from DE gene lists at every time point post-infection in response to MOK023 and MOK124.
DOI: 10.6084/m9.figshare.16943539.v1
title: Additional file 3 of Bovine milk somatic cell transcriptomic response to Staphylococcus aureus is dependent on strain genotype

description: Additional file 3. All significantly overrepresented gene ontology (Table S3) and KEGG (Table S4) pathways derived from DE gene lists at every time point post-infection in response to MOK023 and MOK124.
DOI: 10.6084/m9.figshare.16943545
title: Additional file 1 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 1: Table S1. Blast searches output of the S. pneumoniae complete genomes. For each variant, name, length, sequence, strain host, GenBank accession number, are reported.
DOI: 10.6084/m9.figshare.16943545.v1
title: Additional file 1 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 1: Table S1. Blast searches output of the S. pneumoniae complete genomes. For each variant, name, length, sequence, strain host, GenBank accession number, are reported.
DOI: 10.6084/m9.figshare.16943551
title: Additional file 2 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 2: Table S2. Blast searches output of the complete microbial genomes. For each attB site, name, length, sequence, bacterial species host, GenBank accession number, are reported.
DOI: 10.6084/m9.figshare.16943551.v1
title: Additional file 2 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 2: Table S2. Blast searches output of the complete microbial genomes. For each attB site, name, length, sequence, bacterial species host, GenBank accession number, are reported.
DOI: 10.6084/m9.figshare.16943557
title: Additional file 4 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 4: Table S4. Quantitative PCR data. The threshold cycles (Cts) relative to circular forms (CI), reconstitution of attB site, and chromosomal reference gene (gyrB) quantification are reported. Standard curves, slope and intercept values are reported.
DOI: 10.6084/m9.figshare.16943557.v1
title: Additional file 4 of Chromosomal integration of Tn5253 occurs downstream of a conserved 11-bp sequence of the rbgA gene in Streptococcus pneumoniae and in all the other known hosts of this integrative conjugative element (ICE)

description: Additional file 4: Table S4. Quantitative PCR data. The threshold cycles (Cts) relative to circular forms (CI), reconstitution of attB site, and chromosomal reference gene (gyrB) quantification are reported. Standard curves, slope and intercept values are reported.
DOI: 10.6084/m9.figshare.16943613
title: Additional file 1 of Exploring associations between subjective well-being and personality over a time span of 15–18 months: a cohort study of adolescents in Sweden

description: Additional file 1. Full correlation matrix, correlation composite scores, and item information.
DOI: 10.6084/m9.figshare.16943613.v1
title: Additional file 1 of Exploring associations between subjective well-being and personality over a time span of 15–18 months: a cohort study of adolescents in Sweden

description: Additional file 1. Full correlation matrix, correlation composite scores, and item information.
DOI: 10.6084/m9.figshare.16922455
title: Query SPARQL

description: This file contains a SPARQL query that can be used to look up specific information from the ontology. This information will be used as material for generating questions. There are 16 types of questions that can be raised. Each question type has a different SPARQL query. This SPARQL query is formed based on the type of question that you want to generate. The query used to generate information from the sentence ontology will be more complex than the ontology taxonomy. This happens because there are many components that should be related to each other to form an information from a sentence ontology.
DOI: 10.6084/m9.figshare.16922455.v2
title: Query SPARQL

description: This file contains a SPARQL query that can be used to look up specific information from the ontology. This information will be used as material for generating questions. There are 16 types of questions that can be raised. Each question type has a different SPARQL query. This SPARQL query is formed based on the type of question that you want to generate. The query used to generate information from the sentence ontology will be more complex than the ontology taxonomy. This happens because there are many components that should be related to each other to form an information from a sentence ontology.
DOI: 10.6084/m9.figshare.16922455.v1
title: Query SPARQL

description: This is a query that is used to retrieve information according to the type of question that will be raised.
DOI: 10.6084/m9.figshare.16943626.v1
title: Additional file 2 of Frequency of allele variations in the CFTR gene in a Mexican population

description: Additional file 2: Table S2. Significant results of the comparative analysis for the CFTR allele frequencies between a Mexican population and gnomAD populations. Description of data: Only variants with significant differences to the Mexican frequencies are shown (p values &lt; 0.05). The table contains dbSNP ID, DNA HGVS ID, PROTEIN HGVS ID, MAF for each population, chi-square value, p-value and the clinical significance of each variant.
DOI: 10.6084/m9.figshare.16943626
title: Additional file 2 of Frequency of allele variations in the CFTR gene in a Mexican population

description: Additional file 2: Table S2. Significant results of the comparative analysis for the CFTR allele frequencies between a Mexican population and gnomAD populations. Description of data: Only variants with significant differences to the Mexican frequencies are shown (p values &lt; 0.05). The table contains dbSNP ID, DNA HGVS ID, PROTEIN HGVS ID, MAF for each population, chi-square value, p-value and the clinical significance of each variant.
DOI: 10.6084/m9.figshare.16943623
title: Additional file 1 of Frequency of allele variations in the CFTR gene in a Mexican population

description: Additional file 1: Table S1. Minor allele frequencies (MAF) of the 361 genotyped CFTR variants in a Mexican population. The table shows dbSNP ID, DNA HGVS ID, PROTEIN HGVS ID, Variant type, Clinical significance according to ClinVar, Minor Allele Frequency (MAF), Number of homozygotes and heterozygotes for the variant, and Disorders associated with the variant. The data is in descending order with respect to the allele frequency calculated for the Mexican population.
DOI: 10.6084/m9.figshare.16943481
title: Additional file 14 of A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans

description: Additional file 14
DOI: 10.6084/m9.figshare.16943472
title: Additional file 12 of A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans

description: Additional file 12
DOI: 10.5517/ccdc.csd.cc26l320
title: CCDC 2043181: Experimental Crystal Structure Determination

description: Related Article: Daiki Koga, Toshikazu Ono, Hyuga Shinjo, Yoshio Hisaeda|2021|J.Phys.Chem.Lett.|12|10429|doi:10.1021/acs.jpclett.1c03020
DOI: 10.5517/ccdc.csd.cc26l342
title: CCDC 2043183: Experimental Crystal Structure Determination

description: Related Article: Daiki Koga, Toshikazu Ono, Hyuga Shinjo, Yoshio Hisaeda|2021|J.Phys.Chem.Lett.|12|10429|doi:10.1021/acs.jpclett.1c03020
DOI: 10.5517/ccdc.csd.cc26l353
title: CCDC 2043184: Experimental Crystal Structure Determination

description: Related Article: Daiki Koga, Toshikazu Ono, Hyuga Shinjo, Yoshio Hisaeda|2021|J.Phys.Chem.Lett.|12|10429|doi:10.1021/acs.jpclett.1c03020
DOI: 10.5517/ccdc.csd.cc26l375
title: CCDC 2043186: Experimental Crystal Structure Determination

description: Related Article: Daiki Koga, Toshikazu Ono, Hyuga Shinjo, Yoshio Hisaeda|2021|J.Phys.Chem.Lett.|12|10429|doi:10.1021/acs.jpclett.1c03020
DOI: 10.6084/m9.figshare.16943707
title: Question template based on ontology

description: This file contains question templates for each question type. The question template is formed based on the analysis of the question form of that type. The similarity of the question model in each chapter then forms a question template. Not all components of the ontology can be used to form questions of a certain type. This template will define what class components or instances can use to generate question.
DOI: 10.6084/m9.figshare.16943707.v1
title: Question template based on ontology

description: This file contains question templates for each question type. The question template is formed based on the analysis of the question form of that type. The similarity of the question model in each chapter then forms a question template. Not all components of the ontology can be used to form questions of a certain type. This template will define what class components or instances can use to generate question.
DOI: 10.6084/m9.figshare.16943701
title: Query SPARQL

description: This file contains a SPARQL query that can be used to look up specific information from the ontology. This information will be used as material for generating questions. There are 16 types of questions that can be raised. Each question type has a different SPARQL query. This SPARQL query is formed based on the type of question that you want to generate. The query used to generate information from the sentence ontology will be more complex than the ontology taxonomy. This happens because there are many components that should be related to each other to form an information from a sentence ontology.
DOI: 10.6084/m9.figshare.16943701.v1
title: Query SPARQL

description: This file contains a SPARQL query that can be used to look up specific information from the ontology. This information will be used as material for generating questions. There are 16 types of questions that can be raised. Each question type has a different SPARQL query. This SPARQL query is formed based on the type of question that you want to generate. The query used to generate information from the sentence ontology will be more complex than the ontology taxonomy. This happens because there are many components that should be related to each other to form an information from a sentence ontology.
DOI: 10.3886/e108486v1-100820
title: Do pro-social students care more for the environment?

description: This study uses pro-social and pro-environment attitudes as indicators of social and environmental sustainability to empirically examine the relationship between the two pillars of sustainability. Self reported survey responses of undergraduate students of University of Utah are used for conducting a two-stage quantile regression analysis wherein social support serves as an instrument for identifying pro-social attitude for estimating the relationship between pro-social and pro-environment attitudes. The estimates show that students who receive more social support tend to be more pro-social, and more pro-social students are more pro-environment. These results reiterate that universities can enhance sustainability education by adopting a more holistic approach wherein social and environmental sustainability are cointegrated. Additionally, by strengthening their role as a vital source of social support for students, universities can further enhance the synergistic relationship between pro-social and pro-environment attitudes of university students.
DOI: 10.34740/kaggle/dsv/2781254
title: COVID-19 Indonesia Dataset
DOI: 10.5517/ccdc.csd.cc27sz56
title: CCDC 2079578: Experimental Crystal Structure Determination

description: Related Article: Subhadeep Paul, Paramita Kundu, Paturu Kondaiah, Akhil R. Chakravarty|2021|Inorg.Chem.|60|16178|doi:10.1021/acs.inorgchem.1c01850
DOI: 10.5517/ccdc.csd.cc27v1w1
title: CCDC 2080623: Experimental Crystal Structure Determination

description: Related Article: Qiaomei Jin, Cuihua Jiang, Meng Gao, Dongjian Zhang, Shihe Hu, Jian Zhang|2021|J.Org.Chem.|86|15640|doi:10.1021/acs.joc.1c02175
DOI: 10.5517/ccdc.csd.cc27vb9r
title: CCDC 2080884: Experimental Crystal Structure Determination

description: Related Article: Max Roemer, Angus A. Gillespie, Gemma F. Turner, Gavin R. Flematti, Claire L. Hobday, Alexandre N. Sobolev, Duncan A. Wild, Gareth L. Nealon, Matthew J. Piggott, Stephen A. Moggach, George A. Koutsantonis|2021|Cryst.Growth Des.|21|6558|doi:10.1021/acs.cgd.1c01013
DOI: 10.5517/ccdc.csd.cc27vbct
title: CCDC 2080886: Experimental Crystal Structure Determination

description: Related Article: Max Roemer, Angus A. Gillespie, Gemma F. Turner, Gavin R. Flematti, Claire L. Hobday, Alexandre N. Sobolev, Duncan A. Wild, Gareth L. Nealon, Matthew J. Piggott, Stephen A. Moggach, George A. Koutsantonis|2021|Cryst.Growth Des.|21|6558|doi:10.1021/acs.cgd.1c01013
DOI: 10.5517/ccdc.csd.cc27vfl4
title: CCDC 2080986: Experimental Crystal Structure Determination

description: Related Article: Ding-Nan Shih, Ramalingam Boobalan, Yi-Hung Liu, Rong-Jie Chein, Ching-Wen Chiu|2021|Inorg.Chem.|60|16266|doi:10.1021/acs.inorgchem.1c02073
DOI: 10.5517/ccdc.csd.cc27vfm5
title: CCDC 2080987: Experimental Crystal Structure Determination

description: Related Article: Ding-Nan Shih, Ramalingam Boobalan, Yi-Hung Liu, Rong-Jie Chein, Ching-Wen Chiu|2021|Inorg.Chem.|60|16266|doi:10.1021/acs.inorgchem.1c02073
DOI: 10.5517/ccdc.csd.cc27vfn6
title: CCDC 2080988: Experimental Crystal Structure Determination

description: Related Article: Ding-Nan Shih, Ramalingam Boobalan, Yi-Hung Liu, Rong-Jie Chein, Ching-Wen Chiu|2021|Inorg.Chem.|60|16266|doi:10.1021/acs.inorgchem.1c02073
DOI: 10.5517/ccdc.csd.cc27vfk3
title: CCDC 2080985: Experimental Crystal Structure Determination

description: Related Article: Ding-Nan Shih, Ramalingam Boobalan, Yi-Hung Liu, Rong-Jie Chein, Ching-Wen Chiu|2021|Inorg.Chem.|60|16266|doi:10.1021/acs.inorgchem.1c02073
DOI: 10.5517/ccdc.csd.cc1zfhtq
title: CCDC 1830234: Experimental Crystal Structure Determination

description: Related Article: Songlin Xue, Ningchao Liu, Peifeng Mei, Daiki Kuzuhara, Naoki Aratani, Fengxian Qiu, Hiroko Yamada|2021|Inorg.Chem.|60|16070|doi:10.1021/acs.inorgchem.1c02609
DOI: 10.5517/ccdc.csd.cc287sv5
title: CCDC 2092867: Experimental Crystal Structure Determination

description: Related Article: Hai-Lou Li, Chen Lian, Guo-Yu Yang|2021|Inorg.Chem.|60|16852|doi:10.1021/acs.inorgchem.1c02788
DOI: 10.5517/ccdc.csd.cc287sw6
title: CCDC 2092868: Experimental Crystal Structure Determination

description: Related Article: Hai-Lou Li, Chen Lian, Guo-Yu Yang|2021|Inorg.Chem.|60|16852|doi:10.1021/acs.inorgchem.1c02788
DOI: 10.5281/zenodo.5650585
title: POMET for the meter estimation task

description: The availability of appropriate research corpora is a fundamental concern in music information retrieval (MIR) research. Design, development, and evaluation of a poetic corpus, POMET for the meter estimation task is addressed in this paper. Poems, which communicate through rhythm and apparent meaning, have a vital role in many literary traditions. Metrical rhythm generally involves periodic arrangements of sequences of stressed and unstressed syllables in each line of poems. The aesthetic and emotional perception of poetry can be studied well using poetic meter analysis. A corpus with eight meters is designed and recorded in a studio environment for Malayalam, one of the prominent languages in South India. A pilot evaluation is performed with musical texture features (MTF) and spectrograms using deep neural-network architectures. We hope that the corpus can be used as a benchmark dataset for poetic meter estimation, rhythmic analysis, and corpus-based prosody analysis
DOI: 10.5281/zenodo.5650584
title: POMET for the meter estimation task

description: The availability of appropriate research corpora is a fundamental concern in music information retrieval (MIR) research. Design, development, and evaluation of a poetic corpus, POMET for the meter estimation task is addressed in this paper. Poems, which communicate through rhythm and apparent meaning, have a vital role in many literary traditions. Metrical rhythm generally involves periodic arrangements of sequences of stressed and unstressed syllables in each line of poems. The aesthetic and emotional perception of poetry can be studied well using poetic meter analysis. A corpus with eight meters is designed and recorded in a studio environment for Malayalam, one of the prominent languages in South India. A pilot evaluation is performed with musical texture features (MTF) and spectrograms using deep neural-network architectures. We hope that the corpus can be used as a benchmark dataset for poetic meter estimation, rhythmic analysis, and corpus-based prosody analysis
DOI: 10.6084/m9.figshare.16943728
title: User Acceptance of the Emoji AR Application.csv

description: The total number of subjects for the dataset is 10. There are 9 statements in the questionnaire form based on 5-point Likert Scale. The data is processed using spreadsheet tool to obtain the mean and standard deviation.
DOI: 10.5281/zenodo.5650629
title: Knowledge on Puberty

description: This data set contained information on adolescents' knowledge of puberty and related psychosocial factors.
DOI: 10.5281/zenodo.5650628
title: Knowledge on Puberty

description: This data set contained information on adolescents' knowledge of puberty and related psychosocial factors.
DOI: 10.6084/m9.figshare.16943746
title: Metal transfer and related human health risk assessment through milk from cattle grazing at industrial discharge area

description: This is the supporting information for the manuscript titled "Metal transfer and related human health risk assessment through milk from cattle grazing at industrial discharge area"
DOI: 10.6084/m9.figshare.16943746.v1
title: Metal transfer and related human health risk assessment through milk from cattle grazing at industrial discharge area

description: This is the supporting information for the manuscript titled "Metal transfer and related human health risk assessment through milk from cattle grazing at industrial discharge area"
DOI: 10.6084/m9.figshare.16943755
title: Bunyavirus SFTSV exploits autophagic flux for viral assembly and egress

description: Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging negatively stranded enveloped RNA bunyavirus that causes SFTS with a high case fatality rate of up to 30%. Macroautophagy/autophagy is an evolutionarily conserved process involved in the maintenance of host homeostasis, which exhibits anti-viral or pro-viral responses in reaction to different viral challenges. However, the interaction between the bunyavirus SFTSV and the autophagic process is still largely unclear. By establishing various autophagy-deficient cell lines, we found that SFTSV triggered RB1CC1/FIP200-BECN1-ATG5-dependent classical autophagy flux. SFTSV nucleoprotein induced BECN1-dependent autophagy by disrupting the BECN1-BCL2 association. Importantly, SFTSV utilized autophagy for the viral life cycle, which not only assembled in autophagosomes derived from the ERGIC and Golgi complex, but also utilized autophagic vesicles for exocytosis. Taken together, our results suggest a novel virus–autophagy interaction model in which bunyavirus SFTSV induces classical autophagy flux for viral assembly and egress processes, suggesting that autophagy inhibition may be a novel therapy for treating or releasing SFTS.
DOI: 10.6084/m9.figshare.16943755.v1
title: Bunyavirus SFTSV exploits autophagic flux for viral assembly and egress

description: Severe fever with thrombocytopenia syndrome virus (SFTSV) is an emerging negatively stranded enveloped RNA bunyavirus that causes SFTS with a high case fatality rate of up to 30%. Macroautophagy/autophagy is an evolutionarily conserved process involved in the maintenance of host homeostasis, which exhibits anti-viral or pro-viral responses in reaction to different viral challenges. However, the interaction between the bunyavirus SFTSV and the autophagic process is still largely unclear. By establishing various autophagy-deficient cell lines, we found that SFTSV triggered RB1CC1/FIP200-BECN1-ATG5-dependent classical autophagy flux. SFTSV nucleoprotein induced BECN1-dependent autophagy by disrupting the BECN1-BCL2 association. Importantly, SFTSV utilized autophagy for the viral life cycle, which not only assembled in autophagosomes derived from the ERGIC and Golgi complex, but also utilized autophagic vesicles for exocytosis. Taken together, our results suggest a novel virus–autophagy interaction model in which bunyavirus SFTSV induces classical autophagy flux for viral assembly and egress processes, suggesting that autophagy inhibition may be a novel therapy for treating or releasing SFTS.
DOI: 10.6084/m9.figshare.16943756
title: A noncanonical autophagy is involved in the transfer of <i>Plasmodium</i>-microvesicles to astrocytes

description: Cerebral malaria is a neuroinflammatory disease induced by <i>P. falciparum</i> infection. In animal models, the neuro-pathophysiology of cerebral malaria results from the sequestration of infected red blood cells (iRBCs) in microvessels that promotes the activation of glial cells in the brain. This activation provokes an exacerbated inflammatory response characterized by the secretion of proinflammatory cytokines and chemokines, leading to brain infiltration by pathogenic CD8<sup>+</sup> T lymphocytes. Astrocytes are a major subtype of brain glial cells that play an important role in maintaining the homeostasis of the central nervous system, the integrity of the brain–blood barrier and in mounting local innate immune responses. We have previously shown that parasitic microvesicles (<i>Pb</i>A-MVs) are transferred from iRBCs to astrocytes. The present study shows that an unconventional LC3-mediated autophagy pathway independent of ULK1 is involved in the transfer and degradation of <i>Pb</i>A-MVs inside the astrocytes. We further demonstrate that inhibition of the autophagy process by treatment with 3-methyladenine blocks the transfer of <i>Pb</i>A-MVs, which remain localized in the astrocytic cell membrane and are not internalized. Moreover, bafilomycin A<sub>1</sub>, another drug against autophagy promotes the accumulation of <i>Pb</i>A-MVs inside the astrocytes by inhibiting the fusion with lysosomes, and prevents ECM in mice infected with <i>Pb</i>A. Finally, we establish that RUBCN/rubicon or ATG5 silencing impede astrocyte production in CCL2 and CXCL10 chemokines induced by <i>Pb</i>A stimulation. Altogether, our data suggest that a non-canonical autophagy-lysosomal pathway may play a key role in cerebral malaria through regulation of brain neuro-inflammation by astrocytes.
DOI: 10.34740/kaggle/dsv/2781622
title: AutoXGB