cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7225013
title: NAHosMIP experimental protocol

description: This package contains details of the experimental protocol for the North Atlantic Hosing Model Intercomparison Project (NAHosMIP). See https://www.tipes.dk/na-hosing-mip/ The experimental protocol is described in detail in Jackson et al, (2022), Understanding AMOC stability: the North Atlantic Hosing Model Intercomparison Project. GMD [Full reference to come] The files attached are: create_hosing_GC3LL.py - python code to create a netcdf file with uniform hosing of a given rate (ie 0.3 Sv). This file is set up to read in grid data for HadGEM3-GC3-1LL create_hosing_GC3LL_grl_v2.py - python code to create a netcdf file with hosing around Greenland of a given rate (ie 0.1 Sv). This file is set up to read in grid data for HadGEM3-GC3-1LL and has some grid locations that are specific to the model. hosing.nc - example of uniform hosing of 0.3Sv for HadGEM3-GC3-1LL grid hosing_grl.nc - example of hosing around Greenland of 0.1Sv for HadGEM3-GC3-1LL grid check_hosing_GC31LL.py - script to check hosing file and code for compensation of the hosing throughout the volume. mesh_mask_HighresMIP_eORCA1_extr.nc - grid data for HadGEM3-GC3-1LL SSS_GC31LL.nc example surface salinity data for HadGEM3-GC3-1LL
DOI: 10.25422/azu.data.20736700.v3
title: Plant and Animal Phenophase Definitions

description: The USA National Phenology Network’s (USA-NPN) standardized phenology monitoring protocols were designed to capture the seasonal life cycle stages of plants and animals across polar, temperate, tropical, and water-limited ecosystems. The protocols can be tailored to any sampling density or frequency and can be used either within the <em>Nature’s Notebook</em> observation program, or independently. The resulting data can be used to answer a variety of scientific and management questions from local to continental scales. The protocols are specific to major taxonomic groups and consist of a suite of “phenophases”. A phenophase is an observable stage or phase in the annual life cycle of a plant or animal that can be defined by a start and end point. For plants, phenophases identify the presence or absence of structures (e.g., leaves, flowers, fruits) on an individual plant that is observed repeatedly over the course of one or more growing seasons. For animals, phenophases identify the presence or absence of behaviors such as breeding, migration, and use of food resources. Intensity or abundance measures for each phenophase indicate the degree to which the phenophase is expressed. They represent either an estimate of the number of plant structures or individual animals that are present or engaged in a behavior, or an estimate of the percentage of plant structures observed in a particular state (e.g., percent of flowers that are open). In this document, the phenophases in use for major plant and animal taxonomic groups are summarized in tables, and the full phenophase definitions and associated intensity or abundance measures are included in subsequent sections. <em>For inquiries regarding the contents of this dataset, please contact the Corresponding Author listed in the README.txt file. Administrative inquiries (e.g., removal requests, trouble downloading, etc.) can be directed to data-management@arizona.edu</em>
DOI: 10.34992/v1bx-b805
title: Lake Winnipegosis CTD Idronaut data
DOI: 10.3886/icpsr38622.v1
title: Federal Justice Statistics Program: Defendants in Federal Criminal Cases - Terminated, 2020
title: Version 1

description: The data contain records of defendants in federal criminal cases terminated in United States District Court during fiscal year 2020. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central System file. According to the EOUSA, the United States attorneys conduct approximately 95 percent of the prosecutions handled by the Department of Justice. The Central Charge and Central System data contain variables from the original EOUSA files as well as additional analysis variables. Variables containing identifying information (e.g., name, Social Security Number) were either removed, coarsened, or blanked in order to protect the identities of individuals. These data are part of a series designed by Abt Associates and the Bureau of Justice Statistics. Data and documentation were prepared by Abt Associates.
description: Datasets: DS1: Federal Justice Statistics Program: Defendants in Federal Criminal Cases - Terminated, 2020
description: Defendants in federal criminal cases terminated in United States District Court during fiscal year 2020.
DOI: 10.3886/icpsr38622
title: Federal Justice Statistics Program: Defendants in Federal Criminal Cases - Terminated, 2020
title: Archival Version

description: The data contain records of defendants in federal criminal cases terminated in United States District Court during fiscal year 2020. The data were constructed from the Executive Office for United States Attorneys (EOUSA) Central System file. According to the EOUSA, the United States attorneys conduct approximately 95 percent of the prosecutions handled by the Department of Justice. The Central Charge and Central System data contain variables from the original EOUSA files as well as additional analysis variables. Variables containing identifying information (e.g., name, Social Security Number) were either removed, coarsened, or blanked in order to protect the identities of individuals. These data are part of a series designed by Abt Associates and the Bureau of Justice Statistics. Data and documentation were prepared by Abt Associates.
description: Datasets: DS1: Federal Justice Statistics Program: Defendants in Federal Criminal Cases - Terminated, 2020
description: Defendants in federal criminal cases terminated in United States District Court during fiscal year 2020.
DOI: 10.5281/zenodo.7778743
title: Vertical plant profiles for Dassenbos (NL, 2014-2018, TLS); Wytham Woods (UK, 2022, LEAF) & Northern Australia (2021-2022, LEAF)

description: This dataset was described and used for the analysis of the following publication:<br> <em>StrucNet: A global network for automated vegetation structure monitoring. Brede, B., Newnham, G., Culvenor, D., Armston, J., Bartholomeus, H., Griebel, A., Hayward, J., Junttila, S., Lau, A., Levick, S., Morrone, R., Origo, N., Pfeifer, M., Verbesselt, J. & Herold, M. Remote Sensing in Ecology and Conservation (accepted)</em> <strong>Any use of this dataset should cite the paper above </strong>(Creative Commons Attribution 4.0 International Public License). Contact: kim.calders@ugent.be ================================================<br> Dataset<br> ================================================ 1) TLS vertical plant profiles Dassenbos. Five-year dynamics of forest structure for the four sampling locations in Dassenbos. Data were collected using the same measurement protocol and data analysis using https://www.pylidar.org/ as described in Calders et al. (2015) using a zenith range of 35-70 degrees for 184-186 (some scans were discarded for quality purposes) measurement days during the period from February 2014 to November 2018. The data repository contains the vertical plant profiles and plotting code (Fig 1 in paper) 2) One-year dynamics of vegetation structure for a tropical savanna site in Northern Australia (Fig 2 in paper) and Wytham Woods (Fig 3 in paper). The data repository contains the vertical plant profiles derived from LEAF data and plotting code.
description: {"references": ["StrucNet: A global network for automated vegetation structure monitoring. Brede, B., Newnham, G., Culvenor, D., Armston, J., Bartholomeus, H., Griebel, A., Hayward, J., Junttila, S., Lau, A., Levick, S., Morrone, R., Origo, N., Pfeifer, M., Verbesselt, J. & Herold, M. Remote Sensing in Ecology and Conservation (accepted)", "Calders, K., Schenkels, T., Bartholomeus, H., Armston, J., Verbesselt, J., Herold, M., 2015. Monitoring spring phenology with high temporal resolution terrestrial LiDAR measurements. Agric. For. Meteorol. 203, 158\u2013168."]}
DOI: 10.5281/zenodo.7778742
title: Vertical plant profiles for Dassenbos (NL, 2014-2018, TLS); Wytham Woods (UK, 2022, LEAF) & Northern Australia (2021-2022, LEAF)

description: This dataset was described and used for the analysis of the following publication:<br> <em>StrucNet: A global network for automated vegetation structure monitoring. Brede, B., Newnham, G., Culvenor, D., Armston, J., Bartholomeus, H., Griebel, A., Hayward, J., Junttila, S., Lau, A., Levick, S., Morrone, R., Origo, N., Pfeifer, M., Verbesselt, J. & Herold, M. Remote Sensing in Ecology and Conservation (accepted)</em> <strong>Any use of this dataset should cite the paper above </strong>(Creative Commons Attribution 4.0 International Public License). Contact: kim.calders@ugent.be ================================================<br> Dataset<br> ================================================ 1) TLS vertical plant profiles Dassenbos. Five-year dynamics of forest structure for the four sampling locations in Dassenbos. Data were collected using the same measurement protocol and data analysis using https://www.pylidar.org/ as described in Calders et al. (2015) using a zenith range of 35-70 degrees for 184-186 (some scans were discarded for quality purposes) measurement days during the period from February 2014 to November 2018. The data repository contains the vertical plant profiles and plotting code (Fig 1 in paper) 2) One-year dynamics of vegetation structure for a tropical savanna site in Northern Australia (Fig 2 in paper) and Wytham Woods (Fig 3 in paper). The data repository contains the vertical plant profiles derived from LEAF data and plotting code.
description: {"references": ["StrucNet: A global network for automated vegetation structure monitoring. Brede, B., Newnham, G., Culvenor, D., Armston, J., Bartholomeus, H., Griebel, A., Hayward, J., Junttila, S., Lau, A., Levick, S., Morrone, R., Origo, N., Pfeifer, M., Verbesselt, J. & Herold, M. Remote Sensing in Ecology and Conservation (accepted)", "Calders, K., Schenkels, T., Bartholomeus, H., Armston, J., Verbesselt, J., Herold, M., 2015. Monitoring spring phenology with high temporal resolution terrestrial LiDAR measurements. Agric. For. Meteorol. 203, 158\u2013168."]}
DOI: 10.14768/apd.cs2q-rw19
title: African Pollen Database: NAMELOK fossil pollen dataset
DOI: 10.14768/apd.7qrd-n489
title: African Pollen Database: NGAMI [LN16 P1] fossil pollen dataset
DOI: 10.14768/apd.3an3-d888
title: African Pollen Database: KLAARF fossil pollen dataset
DOI: 10.14768/apd.ry4p-qw76
title: African Pollen Database: KASENDA fossil pollen dataset
DOI: 10.14768/apd.srm6-dy41
title: African Pollen Database: MONOUN fossil pollen dataset
DOI: 10.14768/apd.eejt-1y93
title: African Pollen Database: ABIJATA [AA] fossil pollen dataset
DOI: 10.14768/apd.mhpw-cd29
title: African Pollen Database: LODOBA fossil pollen dataset
DOI: 10.14768/apd.dv1r-vh03
title: African Pollen Database: PRINCESS [PV11.3]* fossil pollen dataset
DOI: 10.14768/apd.pxtk-fs11
title: African Pollen Database: GOBERO  [GO1] fossil pollen dataset
DOI: 10.14768/apd.xk6m-kw53
title: African Pollen Database: VRIDI [6] fossil pollen dataset
DOI: 10.14768/apd.nrgw-mp51
title: African Pollen Database: KITANDA [1] fossil pollen dataset
DOI: 10.14768/apd.qtbr-ng36
title: African Pollen Database: ANAMBE fossil pollen dataset
DOI: 10.14768/apd.nysa-3v15
title: African Pollen Database: GDV [1-2] fossil pollen dataset
DOI: 10.14768/apd.csw9-kg36
title: African Pollen Database: MENIET fossil pollen dataset
DOI: 10.14768/apd.mnxs-k964
title: African Pollen Database: BAOBAB fossil pollen dataset
DOI: 10.14768/apd.msw6-8898
title: African Pollen Database: LT98-18M fossil pollen dataset
DOI: 10.14768/apd.171q-tj61
title: African Pollen Database: MAUNDI fossil pollen dataset
DOI: 10.14768/apd.rvyy-d118
title: African Pollen Database: TELE fossil pollen dataset
DOI: 10.17632/xmgpzp6tg2.1
title: Data for: Geochronology, isotopic chemistry, gold mineralization processes of the black slate-hosted Haoyaoerhudong gold deposit, northern North China Craton

description: 40Ar/39Ar data of biotite , Electro microprobe analysis (EMPA) analytical results (wt.%) and Sulfur and lead isotopic ratios of sulfides from the Haoyaoerhudong gold deposit
DOI: 10.5061/dryad.2k86k38/1
title: North Idaho shrub data

description: Shapefile that includes location and shrub volume data for northern Idaho moose forage shrubs
DOI: 10.5061/dryad.33626h7/1
title: data
DOI: 10.5061/dryad.43sd180/2
title: Data_nestlings_repeats

description: Phenotypic measures of all nestling traits (body mass on d16, wing length on d16, PHA response on d13, brightness, hue and UV chroma of 1 tail feather on d16).Each individual's tail feather was measured multiple times. Nestlings were cross fostered between 2005 and 2009 and thus RearID is their nest of rearing while GeneticID is their nest of origin. Sex is 1 for female, 2 for male and 0 when unknown. Vane tarsus, and wing length are measured in mm and weight_d16 is measured in g. machine refers to the spectrophotometer that was used for measuring tail feathers (1 for 2005-2006, 2 for the other years).
DOI: 10.5061/dryad.43sd180/3
title: Pedigree_BT

description: Pedigree of the blue tit population (2003-2010)
DOI: 10.5061/dryad.43sd180/4
title: WingWebs

description: Multiple measures of nestling wing webs (in mm) before (2 times on day 13) and after PHA injection (3 time on day 14) .
DOI: 10.5061/dryad.43sd180/5
title: Supplementary textR2

description: R codes used for performing quantitative genetic analyses (with asreml-R), structural equation models (with lavaan) and simulations
DOI: 10.5061/dryad.4451494/1
title: Skrinar et al XLH Burden of Disease Survey Supplementary Materials
DOI: 10.5061/dryad.5km40nd/1
title: Simulation data
DOI: 10.5061/dryad.7g7ff0s/1
title: TROCHILIDAE

description: TROCHILIDAE VIDEO EXAMPLES
DOI: 10.5061/dryad.87f53d7/2
title: Dunlin_HighSeq_2014_R1_001.fastq

description: Genomic data from Illumina sequencing for Dunlin
DOI: 10.5061/dryad.87f53d7/3
title: Dunlin_HighSeq_2014_R2_001.fastq

description: Genomic data from Illumina sequencing for Dunlin
DOI: 10.5061/dryad.88sf103/1
title: Stable Isotope records of bats from northern Belize

description: Carbon and nitrogen stable isotope data (including capture record) for bats sampled at Lamanai and Ka'kabish, Orange Walk District, Belize between April-May 2014, 2016 and 2018. Samples which were duplicated are indicated in the duplicate column as "y". Samples with duplicate numbers, only "1" was included in the data analysis for this study, unless the result for duplicate 1 was inconclusive (has "na" in d13c and d15n columns).
DOI: 10.5061/dryad.96224rg/1
title: qPCR data for Dryad

description: Raw qPCR data as obtained from StepOne system and following analyses for both Na,K-ATPase genes of Phymateus aegrotus (identified from gut and nervous tissue) in brain, Malpighian tubules, midgut and hindgut tissue extractions.
DOI: 10.5061/dryad.96224rg/2
title: Na,K-ATPase_Inhibitionsassay_Data_for_Dryad

description: Raw data (absorbances) and final data (percentages) of phosphate released under varying concentrations of ouabain added to the assay buffer for engineered protein constructs mimicking the nervous tissue or gut form of the P.aegrotus Na,K-ATPase. As a comparison data for wild type Drosophila melanogaster Na,K-ATPase expressed in cell culture (to be published in Karageorgi et al., Nature 2019) and Schistocerca gregaria hind gut extracts (published by Petschenka et al. 2018, doi: 10.5061/dryad.fq064) are given.
DOI: 10.5061/dryad.9r106tn/1
title: COI Alignment C. levior

description: Alignment of COI barcoding sequences Crematogaster levior
DOI: 10.5061/dryad.9r106tn/2
title: COI Alignment C. femoratus

description: Alignment of COI barcoding sequences of Camponotus femoratus
DOI: 10.5061/dryad.9r106tn/3
title: C. femoratus Alignment ant1 (BEAST)

description: Alignment of nuclear marker "ant.1". Contains all individuals for which all 4 nuclear markers and the mitochondrial marker COI were sequenced successfully. Used for analysis with BEAST to compute a phylogeny based on 5 loci.
DOI: 10.5061/dryad.9r106tn/4
title: C. femoratus Alignment ant.389 (BEAST)

description: Alignment of nuclear marker "ant.389". Contains all individuals for which all 4 nuclear markers and the mitochondrial marker COI were sequenced successfully. Used for analysis with BEAST to compute a phylogeny based on 5 loci.
DOI: 10.5061/dryad.9r106tn/5
title: C. femoratus Alignment ant.1087 (BEAST)

description: Alignment of nuclear marker "ant.1087". Contains all individuals for which all 4 nuclear markers and the mitochondrial marker COI were sequenced successfully. Used for analysis with BEAST to compute a phylogeny based on 5 loci.
DOI: 10.5061/dryad.9r106tn/6
title: C. femoratus Alignment ant.1401 (BEAST)

description: Alignment of nuclear marker "ant.1401". Contains all individuals for which all 4 nuclear markers and the mitochondrial marker COI were sequenced successfully. Used for analysis with BEAST to compute a phylogeny based on 5 loci.
DOI: 10.5061/dryad.9r106tn/7
title: C. femoratus Alignment COI (BEAST)

description: Alignment of mitochondrial marker COI. Contains all individuals for which all 4 nuclear markers and the mitochondrial marker COI were sequenced successfully. Used for analysis with BEAST to compute a phylogeny based on 5 loci.
DOI: 10.5061/dryad.cj8kk41/1
title: world_cities

description: Location and population of global cities at approx. 2007 census.
DOI: 10.5061/dryad.f83t155/2
title: Cecropia_Readinfile_fung_OTUS_even6130

description: Raw sequence counts for ITS Fungal dataset
DOI: 10.5061/dryad.f83t155/3
title: Cecropia_Readinfile_Bact_OTUS_even1344

description: Raw sequence counts for 16S Bacterial dataset.
DOI: 10.5061/dryad.f83t155/4
title: adiv_Cecropia_Readinfile_fung_OTUS_even6130

description: Alpha diversity values for ITS fungal dataset
DOI: 10.5061/dryad.f83t155/5
title: FunGuildIn.guilds

description: FunGuild output of matched and unmatched sequences
DOI: 10.5061/dryad.h8k61kk/1
title: S3 final dataset in repository

description: Data file for the acoustic analyses
DOI: 10.5061/dryad.j51kt03/1
title: Bird encounter incidents across the farms surveyed

description: Species of insect-eating birds that were encountered across all farms. List includes generalist species that consume insects and other food types
DOI: 10.5061/dryad.j51kt03/2
title: Estimated global populations per hectare of bird species fro each farm from Distance

description: Estimated population of bird species across the entire collection of farms studied. Population estimate are per hectare and are derived from the DISTANCE protocol, projected from regional average estimates for each of the farms surveyed
DOI: 10.5061/dryad.jn07s0s/1
title: Tree PE, PD, richness and predictors

description: An ESRI shapefile containing all predictor and response variables per region. Response variables include phylogenetic endemism (PE), species richness, phylogenetic diveristy (PD) and range size rarity (RSR), among others. Predictor variables include a range of descriptions of geographic, historical and climate variables describing (among other things) connectivity, dynamics of tree cover through time and current temperature and precipitation.
DOI: 10.5061/dryad.n2j6c20/1
title: HZ.stable.MS.July2019.genomicEV.80s

description: Genomic hybrid index of each site along with the distance (Km) from isocline (distr) and corrected distr (distr.corrected=distr+1200) for 1987-94 sampling.
DOI: 10.5061/dryad.n2j6c20/2
title: HZ.stable.MS.July2019.genomicEV.156

description: Genomic hybrid index of each site along with the distance (Km) from isocline (distr) and corrected distr (distr.corrected=distr+1200) for 2015-16 sampling.
DOI: 10.5061/dryad.n2j6c20/3
title: sites.80s.N.W.distr.mtdata.meade&sievert

description: Mitochondrial DNA mean hybrid index of each site along with distr (Km away from the isocline) and distr.corrected (distr+1200Km) for 1980s sampling.
DOI: 10.5061/dryad.n2j6c20/4
title: sites.156.N.W.distr.mtdata

description: Mitochondrial DNA mean hybrid index of each site along with distr (Km away from the isocline) and distr.corrected (distr+1200Km) for 2015-16 sampling.
DOI: 10.5061/dryad.n2j6c20/5
title: TOWAHEWA_pres_hist.ageParentalcorrectedHI.sitemean.distr

description: Plumage mean hybrid index of each site along with distr (Km away from the isocline) and distr.corrected (distr+1200Km) for 1980s and 2015-16 sampling.
DOI: 10.5061/dryad.n50st0n/6
title: S6. 3D mesh files of all segmented skull bones of embryonic T. radix

description: This folder contains 3D mesh (.stl) files of all skull bones of an embryonic T. radix individual. This specimen is housed in the University of Alberta Museum of Zoology (UAMZ R620), and was scanned using a Bruker-SkyScan 1076 micro-CT scanner (see article text for details regarding methods). The micro-CT scans were visualized and segmented in Dragonfly 1.0. The mesh (.stl) files can be viewed in many 3D visualization programs (e.g., Avizo, Adobe Photoshop, etc).
DOI: 10.5061/dryad.r246hv0/2
title: R Code for Hood et al 2019 X-ray Repro Study

description: This file provides the R code for all analyses
DOI: 10.5061/dryad.r246hv0/3
title: Data Hood et al

description: This file includes all data analyzed.  A list of abbreviations can be found in the manuscript supplement.
DOI: 10.5061/dryad.r246hv0/4
title: Reproductive output data Hood et al

description: This file includes all data used to look at the impact of reproductive output on the variables quantifying in this study.  A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.5061/dryad.r246hv0/5
title: Data summary Hood et al

description: This file includes all of the summary data in this study. A list of abbreviations can be found in the supplement to the manuscript.
DOI: 10.15159/phytop.21
title: Lake Peipsi 1996 (Phytoplankton samples)

description: Methods: Samples were in most cases concentrated by precipitation up to 15 ml. Count was made on striped microscope slides within volume 0,1 ml. Microscopes: MBI-3 (magnification 15x20 and 15x40) and Jenaval (7x40). Macroscopic colonies of Gloeotrichia echinulata were counted visually in 500 ml measuring cylinder.
DOI: 10.17632/5dhxfyxz22.1
title: Data for: Neuroanatomical correlates of mobility: sensory brain centres are bigger in winged than in wingless parthenogenetic pea aphid females

description: Measurements of brain neuropil volumes and tibia lengths in the pea aphid Acyrthosiphon pisum
DOI: 10.17632/5vbww9t7m8.1
title: Data for: Cretaceous (Hauterivian-Cenomanian) palaeoceanographic conditions at the southeastern Tethys (Matruh Basin, Egypt): implications on the Cretaceous climate at the northeastern Gondwana
DOI: 10.17632/bnb4chc4ns.1
title: Data for: Biotin oligonucleotide labeling reactions: a method to assess their effectiveness and reproducibility

description: Biotin oligonucleotide labeling reactions: a method to assess their effectiveness and reproducibility. Research data file contains raw data (gel band acquisition by Bio-Rad Gel Doc EZ Imager and analyzed by Image Lab 6.0 programme) and processed data related to the evaluation of oligonucleotide biotinylation status
DOI: 10.17632/y6jgsvymgk.1
title: Data for: Durability screening of Pt ternary alloy (111) surfaces for oxygen reduction reaction using Density Functional Theory

description: Minimum and maximum surface Pt vacancy formation energy (E_svf(min) (eV), E_svf(max) (eV)), intrinsic surface segregation energy (ISS(eV)), and oxygen-induced surface segregation energy (OISS(eV)) of M and N with respect to PtxMyNz alloy surfaces.
DOI: 10.17632/zfbbvcg4ps.3
title: Data for: Development and validation of novel scoring system for the prediction of disease recurrence following resection of colorectal liver metastasis

description: this is consisted of raw data of modeling set of coloreatal cancer liver metastasis patients.