cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zcs5km
title: Occurrence Download

description: A dataset containing 191665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Rattus norvegicus)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 191665 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042632-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ywxyd
title: Occurrence Download

description: A dataset containing 14521 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus sonorus"
 ]
}

 The dataset includes 14521 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042646-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16879074
title: Molecular modeling of Grb7 and its constituent domains reveals potential domain–domain interactions and oligomerization tendencies.

description: Grb7 is a member of the Grb7 protein family, which includes Grb10 and Grb14. These adaptor proteins function mainly as scaffolds in signaling pathways that depend on phosphorylation. They are known to interact with receptor tyrosine kinases and other signaling molecules, and their activity is influenced by protein-protein interactions within their conserved five-domain structure. Grb7 has also been linked to cancer progression and is thought to form dimers and undergo intramolecular interactions that may regulate its signaling functions.

In this study, we focused on understanding how the SH2 domain of Grb7 interacts with its RA-PH (RAPH) region, which may help regulate its overall structure and activity. We introduced five single-site mutations (V45A, R46A, R46K, E47D, S48A) into the SH2 domain and studied their effects using biochemical, biophysical, and computational methods. Circular Dichroism (CD) spectroscopy showed that all mutants maintained the overall fold of the SH2 domain. However, some mutants, especially V45A and S48A, showed lower thermal stability. Surface Plasmon Resonance (SPR) analysis revealed that mutations at R46 led to weaker binding to the RAPH region. Computational docking using AlphaFold and ClusPro supported the experimental findings, showing slightly reduced interaction stability in the R46 mutants. Additional experiments confirmed that the RA and PH domains form a stable unit. Modeling of full-length Grb7 showed that SH2 domain dimerization, correct alignment by the BPS linker, and improved model quality by removing poly-proline disorders.

These results provide new insight into the regulatory mechanisms of Grb7 that could be targeted in cancer research.
DOI: 10.5281/zenodo.16879075
title: Molecular modeling of Grb7 and its constituent domains reveals potential domain–domain interactions and oligomerization tendencies.

description: Grb7 is a member of the Grb7 protein family, which includes Grb10 and Grb14. These adaptor proteins function mainly as scaffolds in signaling pathways that depend on phosphorylation. They are known to interact with receptor tyrosine kinases and other signaling molecules, and their activity is influenced by protein-protein interactions within their conserved five-domain structure. Grb7 has also been linked to cancer progression and is thought to form dimers and undergo intramolecular interactions that may regulate its signaling functions.

In this study, we focused on understanding how the SH2 domain of Grb7 interacts with its RA-PH (RAPH) region, which may help regulate its overall structure and activity. We introduced five single-site mutations (V45A, R46A, R46K, E47D, S48A) into the SH2 domain and studied their effects using biochemical, biophysical, and computational methods. Circular Dichroism (CD) spectroscopy showed that all mutants maintained the overall fold of the SH2 domain. However, some mutants, especially V45A and S48A, showed lower thermal stability. Surface Plasmon Resonance (SPR) analysis revealed that mutations at R46 led to weaker binding to the RAPH region. Computational docking using AlphaFold and ClusPro supported the experimental findings, showing slightly reduced interaction stability in the R46 mutants. Additional experiments confirmed that the RA and PH domains form a stable unit. Modeling of full-length Grb7 showed that SH2 domain dimerization, correct alignment by the BPS linker, and improved model quality by removing poly-proline disorders.

These results provide new insight into the regulatory mechanisms of Grb7 that could be targeted in cancer research.
DOI: 10.5281/zenodo.16939690
title: Experimental plasmonic sensing of malaria using an aluminum metasurface

description: Data for a paper reporting on the design, probing and experimental performance of a malaria optical biosensor for detecting pLDH based on SPR and extraordinary optical transmission. The paper is available at: https://doi.org/10.48550/arXiv.2508.06560
DOI: 10.5281/zenodo.16939691
title: Experimental plasmonic sensing of malaria using an aluminum metasurface

description: Data for a paper reporting on the design, probing and experimental performance of a malaria optical biosensor for detecting pLDH based on SPR and extraordinary optical transmission. The paper is available at: https://doi.org/10.48550/arXiv.2508.06560
DOI: 10.15468/dl.cges47
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Moenkhausia latissima)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042647-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgu8gz
title: Occurrence Download

description: A dataset containing 178 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera leo",
 "Year 1965-2025"
 ]
}

 The dataset includes 178 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042648-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfc8yn
title: Occurrence Download

description: A dataset containing 72425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium repens",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 72425 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042629-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16942109
title: 2025-07-09 linmod retrospective-forecasting data

description: Synchronized data on which the retrospective-forecasting pipeline of cfa-viral-lineage-model can be run, all accessed on 2025-07-09. Data was obtained by the pipeline (via linmod's data module) from Nextstrain (open data) and UShER for retrospective forecast dates of 2022-02-14, 2023-06-01, and 2024-10-01.

To use this data, uncompress the tar.gz file in this repository and move the extracted .cache folder to your local copy of cfa-viral-linege-model/retrospective-forecasting. That pipeline may then be run as normal. For further documentation, see the cfa-viral-lineage-model repository.
DOI: 10.5281/zenodo.16942110
title: 2025-07-09 linmod retrospective-forecasting data

description: Synchronized data on which the retrospective-forecasting pipeline of cfa-viral-lineage-model can be run, all accessed on 2025-07-09. Data was obtained by the pipeline (via linmod's data module) from Nextstrain (open data) and UShER for retrospective forecast dates of 2022-02-14, 2023-06-01, and 2024-10-01.

To use this data, uncompress the tar.gz file in this repository and move the extracted .cache folder to your local copy of cfa-viral-linege-model/retrospective-forecasting. That pipeline may then be run as normal. For further documentation, see the cfa-viral-lineage-model repository.
DOI: 10.7910/dvn/hwdi1a
title: Replication Data for: Autocratic Regime Survival, Regime Instability, and Foreign Asset Expropriation

description: Replication for Bak(2025) : Autocratic Regime Survival, Regime Instability, and Foreign Asset Expropriation
DOI: 10.15468/dl.9d4bgu
title: Occurrence Download

description: A dataset containing 37890 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is one of (United States of America, Canada, Mexico)",
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Populus tremuloides"
 ]
}

 The dataset includes 37890 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042649-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5885/45582ce-9c59423742194d52
title: Monitoring of shorebirds reproduction on Bylot Island, Nunavut, Canada
title: Suivi de la reproduction des limicoles à l’Île Bylot, Nunavut, Canada
DOI: 10.5885/45585xd-de2479484d664de8
title: Location of beach ridges associated with the maximal extent of the Champlain Sea obtained from high-resolution LiDAR elevation data
title: Localisations des crêtes de plages liées à l'étendue maximale de la Mer de Champlain obtenues par donnée d'élévation LiDAR à haute résolution
DOI: 10.5885/45588ce-5a12a84dfaaf4d36
title: Concentrations of dissolved methane, carbon dioxide and oxygen in thermokarst lakes and ponds in palsa peatlands, northern Québec, Canada
title: Concentrations de méthane, de dioxyde de carbone et d’oxygène dans des mares de thermokarst des tourbières à palses du nord du Québec, Canada

description: Permafrost peatland lakes are an organic-rich subcategory of thermokarst lakes and ponds that are known for their high rates of greenhouse gas emissions (Matveev et al. 2016). This Nordicana D archive presents the concentrations of methane and carbon dioxide that were measured in waters sampled at different depths in thermokarst lakes of the Sasapimakwananisikw River (SAS) peatland valley (center of subarctic Québec, Canada), and in thermokarst lakes of the Boniface River (BON) peatland valley (north of subarctic Québec, Canada). Additional data are presented for profiles of the key limnological parameters, and continuous data are presented from moorings that were installed in SAS lakes from 2014 to 2016. For the methane and carbon dioxide profiles, the water was sampled with a water bottle, and the gases determined by headspace equilibration (details in Matveev et al. 2019). The water column profiles of other variables were determined with commercial multiparameter sondes. The continuous data were obtained with autonomous loggers (details in file descriptions).
description: Les lacs de tourbière à pergélisol constituent une sous-catégorie de mares de thermokarst qui sont riches en matière organique et connues pour leurs taux élevés d'émissions de gaz à effet de serre (Matveev et al. 2016). Ces archives de données en Nordicana D présentent les concentrations de méthane et de dioxyde de carbone mesurées dans les eaux échantillonnées à différentes profondeurs dans les mares de thermokarst de la vallée des tourbières de la rivière Sasapimakwananisikw (SAS; centre de Québec subarctique, Canada), et dans les mares de thermokarst de la vallée des tourbières de la rivière Boniface (BON; nord de Québec subarctique, Canada). Des données supplémentaires sont présentées pour les profils d'oxygène, de température et de conductivité, et des données continues sont présentées pour les mouillages installés dans les lacs SAS entre 2014 et 2016. Pour les profils de méthane et de dioxyde de carbone, l'eau a été échantillonnée à l'aide d'une bouteille d'eau et les gaz déterminés par équilibrage de l'espace de tête (détails dans Matveev et al. 2019). Les profils des paramètres limnologiques dans la colonne d’eau ont été déterminés avec les profileurs multi-paramètre. Les données continues ont été obtenues avec des enregistreurs autonomes (détails dans les descriptions de fichiers).
DOI: 10.15468/dl.29qfnq
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-62.75178 -0.54698,-60.91887 -0.54698,-60.91887 1.10712,-62.75178 1.10712,-62.75178 -0.54698))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platyrrhinus lineatus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042651-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2v38bc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-62.75178 -0.54698,-60.91887 -0.54698,-60.91887 1.10712,-62.75178 1.10712,-62.75178 -0.54698))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platyrrhinus lineatus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042652-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/25173
title: Chandra X-ray Observatory ObsId 25173

description: A 14 minute orbital period direct impact accretor
DOI: 10.15468/dl.8ba7wx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Crossocheilus nigriloba)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042654-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/26348
title: Chandra X-ray Observatory ObsId 26348

description: SEARCHING FOR THE X-RAY COUNTERPART OF GEV SOURCE FERMI J1913+0515
DOI: 10.25574/26361
title: Chandra X-ray Observatory ObsId 26361

description: AMUSE-Antlia: Nuclear X-ray Properties of Early-Type Galaxies in a Transitional Environment
DOI: 10.15468/dl.fj84pg
title: Occurrence Download

description: A dataset containing 1321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fouquieria columnaris"
 ]
}

 The dataset includes 1321 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042655-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5885/45594ce-a69880e653314887
title: Monitoring of arctic and red fox reproduction on Bylot Island, Nunavut, Canada
title: Suivi de la reproduction du renard arctique et du renard roux à l’Île Bylot, Nunavut, Canada

description: Foxes are strongly dependent on dens for parturition and rearing of cubs. Due to the shallow permafrost-free layer in most of the arctic fox’s range, new dens are rarely dug and existing ones are often used repeatedly year after year. An effective way to monitor both arctic and red fox populations is to take advantage of their use of den sites for reproduction. Starting in 1993, known den sites in the south plain of Bylot Island were opportunistically visited to assess the presence of cubs. Starting from 2003, the monitoring became systematic. An extensive search of dens was conducted and covered an area of ca. 600 km2 going from the Qarlikturvik valley to Pointe Dufour. Since then, dens are visited twice during summer, once in mid-May and once at the end of June. All visits are made within a week to avoid counting the same litter twice due to relocation of cubs during the rearing period. Only dens where cubs are seen or heard are categorized as breeding dens (natal or rearing den). Since 2007, camera traps are installed on some dens to complement field observations.
description: Les renards sont très dépendants de tanières, aussi bien pour la mise-bas que pour l’élevage des jeunes. Étant donné la faible épaisseur de la couche active du pergélisol dans la majorité de la zone de distribution du renard arctique, il est rare que de nouvelles tanières soient excavées et celles existantes sont souvent réutilisées année après année. Une manière efficace d’effectuer le suivi des populations de renards arctiques et de renards roux est donc de tirer partie de leur utilisation des tanières pour la reproduction. Depuis 1993, les tanières de renards connues dans la plaine Sud de l’île Bylot ont été visitées chaque année de manière opportuniste afin de déterminer la présence de jeunes. À partir de 2003, le suivi est devenu systématique. Une recherche intensive des tanières a débuté jusqu’à recouvrir une aire d’environ 600 km2 s’étendant de la vallée de Qarlikturvik à la Pointe Dufour. Les tanières sont depuis visitées deux fois durant l’été, une fois à la mi-mai et une fois à la fin juin. Toutes les visites se font en moins d’une semaine afin de minimiser un double comptage de la même portée en cas de déménagement des jeunes lors de la période d’élevage. Seules les tanières avec des jeunes vus ou entendus sont catégorisées comme étant des tanières de reproduction (tanière natale ou tanière d’élevage). À partir de 2007, des appareils photo automatiques ont été posés sur certaines tanières afin de compléter les informations de terrain provenant des visites.
DOI: 10.5885/45600ce-c0960664fe8f4038
title: Fossil diatom abundance in a lake sediment core, Bylot Island, Nunavut
title: Abondance des diatomées fossiles dans une carotte de sédiments lacustres, Île Bylot, Nunavut, Canada

description: This dataset presents all the fossil diatom species identified in a 109 cm-long lake sediment core from a thermokarst lake in Bylot Island, Nunavut, Canada. The core was collected in June 2015 at « Gull Lake » (also named BYL-66 in other publications) from the still-present ice cover with a 7 cm-diameter percussion corer (Aquatic Research Instruments). Slides were prepared at the Aquatic Paleoecology Laboratory of CEN for 60 samples; each cm for the upper 12 cm of the core, and then each 2 cm towards core bottom. For each sample, about 400 diatom valves were counted along transects using a light microscope at a 1000x magnification.
description: Ces données représentent l'ensemble des espèces de diatomées fossiles identifiés dans une carotte de sédiments lacustres de 109 cm provenant d'un lac de thermokarst à l'Île Bylot, Nunavut, Canada. La carotte a été prélevée en juin 2015 au « Lac aux Goélands » (aussi nommé BYL-66 dans d'autres publications) à partir du couvert de glace encore présent à l'aide d'un carottier à percussion de 7 cm de diamètre (Aquatic Research Instruments). Des lames minces ont été préparées au Laboratoire de Paléoécologie Aquatique du CEN pour 60 échantillons; à tous les cm pour les premiers 12 cm de la carotte, puis à tous les 2 cm pour le reste de la carotte. Pour chaque échantillon, environ 400 valves ont été identifiées le long de transects à l’aide d’un microscope avec un grossissement de 1000x.
DOI: 10.6084/m9.figshare.29269574
title: Active botanical biofilters for nitrogen dioxide and ozone removal using granular activated carbon

description: Botanical biofilters can remediate numerous air pollutants and show potential for the removal of indoor NO<sub>2</sub> and O<sub>3</sub>. Granular Activated Carbon (GAC) is a promising new addition to botanical biofilter growth media, increasing efficiency in Volatile Organic Compound (VOC) remediation, but it remains untested for other gaseous pollutants. This work assessed the capacity of an active botanical biofilter with a GAC growth medium to filter gaseous NO<sub>2</sub> and O<sub>3</sub> within a closed-loop flow-through reactor. We incorporate the effects associated with two plant species, <i>Spathiphyllum Wallisi</i> and <i>Syngonium Podophyllum</i>, substrate moisture, and varying ratios of GAC to coco coir on pollutant removal efficiency. All GAC containing substrates exhibited exponential decay for NO<sub>2,</sub> with a 50% GAC wetted substrate composition producing the peak decay rate (0.27 ± 0.048 ppb.s<sup>−1</sup>) and Clean Air Delivery Rate (CADR) at 1013.0 ± 173.1 m<sup>3</sup>·h<sup>−1</sup>·m<sup>−3</sup>of biofilter substrate. All treatments demonstrated non-significant removal of elevated O<sub>3</sub>, possibly due to higher concentrations tested in the current work. There was no difference in NO<sub>2</sub> and O<sub>3</sub> removal rates or CADR between the two-plant species. This work provides promising results for the use of GAC within an active botanical biofilter to improve the removal of high concentrations of NO<sub>2</sub>. Botanical biofilters have demonstrated promising <i>in-situ</i> results for reducing indoor and urban air pollutants. The current research highlights the air-cleaning potential a granular activated carbon-based growth substrate can add to botanical biofilters for the removal of NO<sub>2</sub>, but not O<sub>3</sub>. Under elevated NO<sub>2</sub> concentrations, a growth substrate composition of 50% GAC and coconut husk produced an average clean air delivery rate of 1013.0 ± 173.1 m<sup>3</sup> ·h<sup>−1</sup> ·m<sup>−3</sup> of the biofilter substrate, outperforming botanical biofilters without GAC that underwent the same testing conditions. Furthermore, insight has been provided into the adsorption characteristics of GAC within botanical biofilters.