cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.obu0uj
title: Occurrence Download

description: A dataset containing 896 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Data on agroforestry plant species of Benin"
 ]
}

 The dataset includes 896 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023325-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpouix
title: Occurrence Download

description: A dataset containing 2482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20.03906 36.59789,-22.14844 2.81137,1.05469 -2.1089,8.78906 -42.55308,29.17969 -46.55886,60.82031 15.28419,50.27344 16.63619,29.88281 40.9799,-20.03906 36.59789))",
 "TaxonKey is Sylvia hortensis (Gmelin, 1789)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2482 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017033-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25970053
title: Yoga vs. aerobic exercise in increasing MVPA among children: secondary analysis of a randomized controlled trial in rural India

description: The objective of this study was to test the effect of both yoga and aerobic exercise on children’s moderate-to-vigorous physical activity (MVPA).
DOI: 10.15468/dl.rljgeo
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 {
 "or" : [
 "Issue is Recorded date invalid",
 "Issue is Country invalid",
 "Issue is Country derived from coordinates",
 "Issue is Coordinate reprojected",
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded"
 ]
 },
 "TaxonKey is Phalanger gymnotis Peters & Doria, 1875"
 ]
}

 The dataset includes 75 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013096-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6aiwh
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-16.9519 28.36724,-16.75964 27.975,-16.52893 27.95559,-16.01257 28.57487,-16.21033 28.62793,-16.9519 28.36724))",
 "HasCoordinate is true",
 "TaxonKey is Euphorbia lamarckii Sweet",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 104 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028251-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25970086
title: Print Orientation Optimization Data

description: Datasets for print orientation optimization.
DOI: 10.15468/dl.izzfkg
title: Occurrence Download

description: A dataset containing 500 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemicentetes semispinosus (G.Cuvier, 1798)"
 ]
}

 The dataset includes 500 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017033-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dyqo1r
title: Occurrence Download

description: A dataset containing 145054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-64.33594 -18.51295,-62.92969 -18.51295,-62.92969 -17.17438,-64.33594 -17.17438,-64.33594 -18.51295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 145054 records from 245 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013096-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26691700.v1
title: Additional file 28 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 28: Table S22. Summary statistics of the candidate analysis between disease-associated TRA/TRB/IGK/IGL k-mers and clinical phenotypes in rheumatoid arthritis. The statistical significance of the association of each k-mer is shown separately for response to TNFi therapy, disease activity, RF and ACPA phenotypes. Abbreviations: FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691703
title: Additional file 29 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 29: Table S23. Summary statistics of the k-mer association analysis with clinical phenotypes in rheumatoid arthritis. The statistical significance of the association between each k-mer and response to TNFi therapy, disease activity, RF and ACPA phenotypes is shown at the chain level. For each k-mer, the statistical significance determined by the Hurdle, continuous and discrete models is provided. Abbreviations: FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691703.v1
title: Additional file 29 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 29: Table S23. Summary statistics of the k-mer association analysis with clinical phenotypes in rheumatoid arthritis. The statistical significance of the association between each k-mer and response to TNFi therapy, disease activity, RF and ACPA phenotypes is shown at the chain level. For each k-mer, the statistical significance determined by the Hurdle, continuous and discrete models is provided. Abbreviations: FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691706
title: Additional file 30 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 30: Table S24. Clusters of TRB clones that are enriched in the repertoire of patients with rheumatoid arthritis and healthy individuals compared to a naive repertoire. Summary statistics of the TRB clusters’ enrichment in the immune repertoire of rheumatoid arthritis patients and healthy controls compared to a naive repertoire of CD4+ and CD8+ T cells (P&lt;0.1). The name of the most representative amino acid motif of each TRB cluster is based on the nomenclature used by the GLIPH2 algorithm. Detailed information on the clones that belong to each TRB cluster is also provided, including the number of unique clones, CDR3 amino acid sequences as well as V and J gene segments. Abbreviations: N, sample size, FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691706.v1
title: Additional file 30 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 30: Table S24. Clusters of TRB clones that are enriched in the repertoire of patients with rheumatoid arthritis and healthy individuals compared to a naive repertoire. Summary statistics of the TRB clusters’ enrichment in the immune repertoire of rheumatoid arthritis patients and healthy controls compared to a naive repertoire of CD4+ and CD8+ T cells (P&lt;0.1). The name of the most representative amino acid motif of each TRB cluster is based on the nomenclature used by the GLIPH2 algorithm. Detailed information on the clones that belong to each TRB cluster is also provided, including the number of unique clones, CDR3 amino acid sequences as well as V and J gene segments. Abbreviations: N, sample size, FDR, false discovery rate.
DOI: 10.6084/m9.figshare.26691709
title: Additional file 31 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 31: Table S25. Genetic association between HLA alleles and rheumatoid arthritis risk in the Spanish population. The frequency of each HLA allele in both the case and control populations is shown. The statistical significance and effect size of each association are also provided. Abbreviations: CTRL, control individuals; HLA, human leukocyte antigen; OR, odds ratio; P, p.-value; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.26691709.v1
title: Additional file 31 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 31: Table S25. Genetic association between HLA alleles and rheumatoid arthritis risk in the Spanish population. The frequency of each HLA allele in both the case and control populations is shown. The statistical significance and effect size of each association are also provided. Abbreviations: CTRL, control individuals; HLA, human leukocyte antigen; OR, odds ratio; P, p.-value; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.26691715
title: Additional file 33 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 33: Table S26. Association of isotype-specific features with clinical phenotypes in rheumatoid arthritis. The summary statistics (i.e., significance and effect size) of the isotype percentage, isotype class switching, somatic hypermutations and percentage of mutated IgD/M associations with disease clinical phenotype are shown. Abbreviations: P, p.-value; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.26691715.v1
title: Additional file 33 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 33: Table S26. Association of isotype-specific features with clinical phenotypes in rheumatoid arthritis. The summary statistics (i.e., significance and effect size) of the isotype percentage, isotype class switching, somatic hypermutations and percentage of mutated IgD/M associations with disease clinical phenotype are shown. Abbreviations: P, p.-value; RA, rheumatoid arthritis.
DOI: 10.6084/m9.figshare.26691718
title: Additional file 34 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 34: Table S27. Predictive performance of the multi-chain AIRR predictors evaluated in the present study. The predictive performance of each multi-chain AIRR predictor is determined using the accuracy, sensitivity, specificity, precision and false positive rate measures. For each multi-chain AIRR predictor, the number of individuals that were properly classified is also shown. The AIRR feature column indicates if the multi-chain AIRR predictor was built using information from a single AIRR- feature or aggregating information from different AIRR features. Information from different AIRR features was aggregated according to different thresholds of accuracy when the sample size of the classes tended to be balanced (i.e., predictor of rheumatoid arthritis diagnosis and disease activity). The aggregation of information from different AIRR features was based on different specificity thresholds when the clinical interest was to identify the minor class (i.e., predictors of TNFi response, ACPA and RF phenotypes). The predictive performance of redundant multi-chain AIRR predictors obtained after applying different accuracy or specificity thresholds is not shown.
DOI: 10.6084/m9.figshare.26691718.v1
title: Additional file 34 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 34: Table S27. Predictive performance of the multi-chain AIRR predictors evaluated in the present study. The predictive performance of each multi-chain AIRR predictor is determined using the accuracy, sensitivity, specificity, precision and false positive rate measures. For each multi-chain AIRR predictor, the number of individuals that were properly classified is also shown. The AIRR feature column indicates if the multi-chain AIRR predictor was built using information from a single AIRR- feature or aggregating information from different AIRR features. Information from different AIRR features was aggregated according to different thresholds of accuracy when the sample size of the classes tended to be balanced (i.e., predictor of rheumatoid arthritis diagnosis and disease activity). The aggregation of information from different AIRR features was based on different specificity thresholds when the clinical interest was to identify the minor class (i.e., predictors of TNFi response, ACPA and RF phenotypes). The predictive performance of redundant multi-chain AIRR predictors obtained after applying different accuracy or specificity thresholds is not shown.
DOI: 10.6084/m9.figshare.26691721
title: Additional file 35 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 35: Table S28. Detailed information on the statistical test used to determine the association between each AIRR feature and clinical phenotype of interest. This information is provided for both the baseline and longitudinal analyses.
DOI: 10.6084/m9.figshare.26691721.v1
title: Additional file 35 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 35: Table S28. Detailed information on the statistical test used to determine the association between each AIRR feature and clinical phenotype of interest. This information is provided for both the baseline and longitudinal analyses.
DOI: 10.6084/m9.figshare.26691733
title: Additional file 38 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 38: Table S29. Main characteristics of the single-clone, meta-clone and k-mer association analyses with rheumatoid arthritis and clinical phenotypes. For each analysis, the number of UMIs, clones, meta-clones, k-mers as well as the clone, meta-clone and k-mer detection rate per sample are shown at the chain level. The number of clones, meta-clones and k-mers detected in &gt;1% of the samples that were included in the association analyses is also provided. Abbreviations: M, mean; N, sample size.
DOI: 10.6084/m9.figshare.26691733.v1
title: Additional file 38 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 38: Table S29. Main characteristics of the single-clone, meta-clone and k-mer association analyses with rheumatoid arthritis and clinical phenotypes. For each analysis, the number of UMIs, clones, meta-clones, k-mers as well as the clone, meta-clone and k-mer detection rate per sample are shown at the chain level. The number of clones, meta-clones and k-mers detected in &gt;1% of the samples that were included in the association analyses is also provided. Abbreviations: M, mean; N, sample size.
DOI: 10.6084/m9.figshare.26691736.v1
title: Additional file 39 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 39: Table S30. Complete list of the AIRR variables used for developing multi-chain AIRR predictors. Detailed information on the 4,521 AIRR variables and 6,407 HLA genetic variants from the present study population that were available for analysis.
DOI: 10.6084/m9.figshare.26691736
title: Additional file 39 of Seven-chain adaptive immune receptor repertoire analysis in rheumatoid arthritis reveals novel features associated with disease and clinically relevant phenotypes

description: Additional file 39: Table S30. Complete list of the AIRR variables used for developing multi-chain AIRR predictors. Detailed information on the 4,521 AIRR variables and 6,407 HLA genetic variants from the present study population that were available for analysis.
DOI: 10.6084/m9.figshare.25389418
title: Additional file 1 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 1.
DOI: 10.6084/m9.figshare.25389418.v1
title: Additional file 1 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 1.
DOI: 10.6084/m9.figshare.25389928
title: Additional file 2 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 2.
DOI: 10.6084/m9.figshare.25389928.v1
title: Additional file 2 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 2.
DOI: 10.6084/m9.figshare.26691844
title: Additional file 5 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 5.
DOI: 10.6084/m9.figshare.26691844.v1
title: Additional file 5 of Multi-Omics integration can be used to rescue metabolic information for some of the dark region of the Pseudomonas putida proteome

description: Additional file 5.
DOI: 10.15468/dl.jnpwbh
title: Occurrence Download

description: A dataset containing 2044 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Botrylloides violaceus Oka, 1927"
 ]
}

 The dataset includes 2044 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003690-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ew3vos
title: Occurrence Download

description: A dataset containing 984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 2a7e3080-28a9-11dd-97cd-b8a03c50a862",
 "HasCoordinate is true",
 "TaxonKey is Ortalis columbiana Hellmayr, 1906",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 984 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016574-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wfastp
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia argyrodendron Domin",
 "HasCoordinate is true"
 ]
}

 The dataset includes 98 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003692-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ynvld7
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Otoba lehmannii (A.C.Sm.) A.H.Gentry",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 149 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016572-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4avq6
title: Occurrence Download

description: A dataset containing 535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-99.97559 15.86835,-91.01074 12.63176,-87.58301 11.77272,-82.66113 13.31693,-81.51855 16.03737,-89.42871 17.3003,-91.62598 19.38578,-95.05371 18.97071,-97.25098 21.93489,-104.19434 18.47127,-99.97559 15.86835))",
 "HasGeospatialIssue is false",
 "TaxonKey is Peromyscus beatae Thomas, 1903"
 ]
}

 The dataset includes 535 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0107634-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64ks8u
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ptychadena bunoderma (Boulenger, 1907)"
 ]
}

 The dataset includes 38 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018453-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.epdz3u
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Strabomantis ruizi (Lynch, 1981)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016579-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n8scjm
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus shitan Abdala, Quinteros, Scrocchi & Stazzonelli, 2010"
 ]
}

 The dataset includes 48 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089089-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83e4nf
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria bamendae Hepper"
 ]
}

 The dataset includes 23 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011097-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7qoph
title: Occurrence Download

description: A dataset containing 1170 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "PublishingOrg is a41250f0-7c3e-11d8-a19c-b8a03c50a862",
 "HasCoordinate is true",
 "TaxonKey is Rangifer C.H.Smith, 1827",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1170 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016577-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.