cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24750228
title: Raw data

description: <b>The role of lncRNAs related ceRNA regulatory network in multiple hippocampal pathological processes during the development of perioperative neurocognitive disorders</b>
DOI: 10.6084/m9.figshare.24750228.v1
title: Raw data

description: <b>The role of lncRNAs related ceRNA regulatory network in multiple hippocampal pathological processes during the development of perioperative neurocognitive disorders</b>
DOI: 10.6084/m9.figshare.24780015
title: Supplementary Material for: Prevalence of cardiovascular drugs and oral anticoagulants use among persons with and without Parkinson’s disease

description: Introduction
Cardio- and cerebrovascular diseases are common among persons with Parkinson’s disease (PD), but it is unknown how prevalence of cardiovascular drugs and oral anticoagulants use changes in relation to PD diagnosis. 

Methods
We investigated prevalence of cardiovascular drugs and oral anticoagulants use among persons with and without PD among 17 541 persons who received incident PD diagnosis in 2001-2015 in Finland and their 116 829 matched comparison persons. Prevalence was calculated in six-month time windows from five years before to five years after PD diagnosis (index date) and compared to a matched cohort without PD using generalized estimating equations. 

Results
Persons with PD had higher prevalence of any cardiovascular drugs (unadjusted OR = 1.15; 95% CI 1.11–1.18), and oral anticoagulants (unadjusted OR = 1.16; 95% CI 1.11–1.22) before index date than those without PD. After index date, persons with PD had lower prevalence of cardiovascular drugs (0.94; 95% CI 0.91–0.96), and no difference was observed for oral anticoagulants. Prevalence of any cardiovascular drugs on index date were 66% and 61% for persons with and without PD respectively. Beta blockers were the most common cardiovascular drugs in both cohorts. Warfarin was the most common oral anticoagulant, but use of direct oral anticoagulants increased during the last years of follow-up.

Conclusion
Orthostatic hypotension and weight loss likely explain the decreased cardiovascular drugs use after PD diagnosis. Results with oral anticoagulants may reflect clinical assessment of benefits being larger than risks despite of risks associated with their use in persons with PD.
DOI: 10.6084/m9.figshare.24780015.v1
title: Supplementary Material for: Prevalence of cardiovascular drugs and oral anticoagulants use among persons with and without Parkinson’s disease

description: Introduction
Cardio- and cerebrovascular diseases are common among persons with Parkinson’s disease (PD), but it is unknown how prevalence of cardiovascular drugs and oral anticoagulants use changes in relation to PD diagnosis. 

Methods
We investigated prevalence of cardiovascular drugs and oral anticoagulants use among persons with and without PD among 17 541 persons who received incident PD diagnosis in 2001-2015 in Finland and their 116 829 matched comparison persons. Prevalence was calculated in six-month time windows from five years before to five years after PD diagnosis (index date) and compared to a matched cohort without PD using generalized estimating equations. 

Results
Persons with PD had higher prevalence of any cardiovascular drugs (unadjusted OR = 1.15; 95% CI 1.11–1.18), and oral anticoagulants (unadjusted OR = 1.16; 95% CI 1.11–1.22) before index date than those without PD. After index date, persons with PD had lower prevalence of cardiovascular drugs (0.94; 95% CI 0.91–0.96), and no difference was observed for oral anticoagulants. Prevalence of any cardiovascular drugs on index date were 66% and 61% for persons with and without PD respectively. Beta blockers were the most common cardiovascular drugs in both cohorts. Warfarin was the most common oral anticoagulant, but use of direct oral anticoagulants increased during the last years of follow-up.

Conclusion
Orthostatic hypotension and weight loss likely explain the decreased cardiovascular drugs use after PD diagnosis. Results with oral anticoagulants may reflect clinical assessment of benefits being larger than risks despite of risks associated with their use in persons with PD.
DOI: 10.5517/ccdc.csd.cc24lv6t
title: CCDC 1984316: Experimental Crystal Structure Determination

description: Related Article: Wahid Mesbah, Armin Berndt, Gertraud Geiseler, Werner Massa|2020|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24276946
title: Supplementary files of the study on <i>Quercus longinux </i>

description: Supplemental data of the vcf file, environmental factors, leaf traits, isolation by resistance (IBR) layers, and binary distribution map of <i>Quercus longinux</i>
DOI: 10.6084/m9.figshare.24276946.v1
title: Supplementary files of the study on <i>Quercus longinux </i>

description: Supplemental data of the vcf file, environmental factors, leaf traits, isolation by resistance (IBR) layers, and binary distribution map of <i>Quercus longinux</i>
DOI: 10.23719/1529864
title: 2016 EPA National Wetland Condition Assessment water quality data

description: EPA's 2016 National Wetland Condition Assessment sampled wetlands across the conterminous USA for vegetation, soils, water chemistry, and anthropogenic impacts.  Data for all of these elements of the 2016 NWCA survey are available from the EPA NARS website.  This particular publication uses the water chemistry data and the anthropogenic impacts data, as well as the general site data that describes sampling locations, wetland type classifications, etc.
DOI: 10.34740/kaggle/ds/4134726
title: CT Scan - Head and Neck
DOI: 10.5281/zenodo.10316689
title: Corpus of correspondences between software mentions and papers

description: This corpus has been created using a collection of 148 papers extracted from the repository of Papers With Code. It represents the bidirectional corresponde between software mentions and papers. It means, if a software is mentioned in a paper, and the paper is mentioned in the software repository.
DOI: 10.5281/zenodo.10316688
title: Corpus of correspondences between software mentions and papers

description: This corpus has been created using a collection of 148 papers extracted from the repository of Papers With Code. It represents the bidirectional corresponde between software mentions and papers. It means, if a software is mentioned in a paper, and the paper is mentioned in the software repository.
DOI: 10.5281/zenodo.10256948
title: KinActive: data

description: KinActive: datasets
The datasets related to protein kinases (PKs) prepared using the KinActive tool. Namely:

lXt-PK: A lXtractor data collection of protein kinase sequences and structures.
Default variables achored to a PF00069 sequence profile numbering calculated for lXt-PK domain sequences and structures:

default_str_vs: A default set of structure variables describing PK domains: distances, SASA, and angles.
default_can_seq_vs: A default set of ProteinFingerPrint (PFP) variables calculated for canonical sequences for each domain within the lXt-PK.
default_str_seq_vs: The same as above but calculated for PDB sequences.
default_lig_vs: Variable set describing how each PK domain structure relates to its connected ligands.
sp_variables: PFP variables required to run sequence-based models calculated for extracted SwissProt PK domains.
sp_predictions: ML predictions for PK-domain-containing SwissProt sequences. The predictions are propensities towards DFG-in or DFG-out conformations.
pdb_predictions: ML-based annotations of the active/inactive and DFG conformations for each domain structure in lXt-PK.
DOI: 10.5281/zenodo.10256947
title: KinActive: data

description: KinActive: datasets
The datasets related to protein kinases (PKs) prepared using the KinActive tool. Namely:

lXt-PK: A lXtractor data collection of protein kinase sequences and structures.
Default variables achored to a PF00069 sequence profile numbering calculated for lXt-PK domain sequences and structures:

default_str_vs: A default set of structure variables describing PK domains: distances, SASA, and angles.
default_can_seq_vs: A default set of ProteinFingerPrint (PFP) variables calculated for canonical sequences for each domain within the lXt-PK.
default_str_seq_vs: The same as above but calculated for PDB sequences.
default_lig_vs: Variable set describing how each PK domain structure relates to its connected ligands.
sp_variables: PFP variables required to run sequence-based models calculated for extracted SwissProt PK domains.
sp_predictions: ML predictions for PK-domain-containing SwissProt sequences. The predictions are propensities towards DFG-in or DFG-out conformations.
pdb_predictions: ML-based annotations of the active/inactive and DFG conformations for each domain structure in lXt-PK.
DOI: 10.5281/zenodo.10317006
title: Artefacts - Strategy Prediction for Verification
DOI: 10.5281/zenodo.10317007
title: Artefacts - Strategy Prediction for Verification
DOI: 10.6084/m9.figshare.24781437.v1
title: Supplementary Material for: Oxytocin receptor-expressing neurons in the medial preoptic area are essential for lactation, whereas those in the lateral septum are not critical for maternal behavior.

description: Introduction: In nurturing systems, the oxytocin (Oxt)–oxytocin receptor (Oxtr) system is important for parturition, and essential for lactation and parental behavior. Among the nerve nuclei that express Oxtr, the lateral septal nucleus (LS) and medial preoptic area (MPOA) are representative regions that control maternal behavior. Methods: We investigated the role of Oxtr- and Oxtr-expressing neurons, located in the LS and MPOA, in regulating maternal behavior by regulating Oxtr expression in a region-specific manner using recombinant mice and adeno-associated viruses. We quantified the prolactin (Prl) concentrations in the pituitary gland and plasma when Oxtr expression in the MPOA was reduced. Results: The endogenous Oxtr gene in the neurons of the LS did not seem to play an essential role in maternal behavior. Conversely, decreased Oxtr expression in the MPOA increased the frequency of pups being left outside the nest and reduced their survival rate. Deletion of Oxtr in MPOA neurons prevented elevation of Prl levels in plasma and pituitary at postpartum day 2. Discussion/Conclusion: Oxtr-expressing neurons in the MPOA are involved in the postpartum production of Prl. We confirmed the essential functions of Oxtr-expressing neurons and the Oxtr gene itself in the MPOA for the sustainability of maternal behavior, which involved Oxtr-dependent induction of Prl.
DOI: 10.6084/m9.figshare.24781437
title: Supplementary Material for: Oxytocin receptor-expressing neurons in the medial preoptic area are essential for lactation, whereas those in the lateral septum are not critical for maternal behavior.

description: Introduction: In nurturing systems, the oxytocin (Oxt)–oxytocin receptor (Oxtr) system is important for parturition, and essential for lactation and parental behavior. Among the nerve nuclei that express Oxtr, the lateral septal nucleus (LS) and medial preoptic area (MPOA) are representative regions that control maternal behavior. Methods: We investigated the role of Oxtr- and Oxtr-expressing neurons, located in the LS and MPOA, in regulating maternal behavior by regulating Oxtr expression in a region-specific manner using recombinant mice and adeno-associated viruses. We quantified the prolactin (Prl) concentrations in the pituitary gland and plasma when Oxtr expression in the MPOA was reduced. Results: The endogenous Oxtr gene in the neurons of the LS did not seem to play an essential role in maternal behavior. Conversely, decreased Oxtr expression in the MPOA increased the frequency of pups being left outside the nest and reduced their survival rate. Deletion of Oxtr in MPOA neurons prevented elevation of Prl levels in plasma and pituitary at postpartum day 2. Discussion/Conclusion: Oxtr-expressing neurons in the MPOA are involved in the postpartum production of Prl. We confirmed the essential functions of Oxtr-expressing neurons and the Oxtr gene itself in the MPOA for the sustainability of maternal behavior, which involved Oxtr-dependent induction of Prl.
DOI: 10.5281/zenodo.10312333
title: Measurement report: Secondary organic aerosols at a forested mountain site in southeastern China

description: Supporting dataset for Measurement report: Secondary organic aerosols at a forested mountain site in southeastern China
DOI: 10.5281/zenodo.10316866
title: Measurement report: Secondary organic aerosols at a forested mountain site in southeastern China

description: Supporting dataset for Measurement report: Secondary organic aerosols at a forested mountain site in southeastern China
DOI: 10.15151/esrf-es-1368371588
title: Revealing the structure of the new C3 phase: the denser phase of hydrogen-hydrate

description: Gas hydrates are crystalline compounds formed by polyhedral water cages of different size filled with gas molecules in a non-stochiometric ratio. Under high pressure conditions most of gas hydrates transform gas-filled ices, constituted by a water-ice skeleton isostructural to one of the low pressure ice phases filled with gas molecules in its channels. The gas molecules prevent the empty ice structure to collapse exerting a strong hydrophobic repulsion on the water molecules, and are in such a way confined at remarkable high densities in the ice skeleton. In a recent HP powder diffraction experiment on the ID 15 beamline we have observed the formation of the DFT predicted C3 phase of the hydrogen-hydrate. This filled ice is based on ice Ic frame and has an exceptionally high H2O: 2H2 ratio. Here we propose a new experiment on the Id28 beamtime to fully determine C3 structure, including H2 positions, by single-crystal X-ray diffraction. This study is part of a PhD thesis project.
DOI: 10.6084/m9.figshare.22180255.v1
title: Figures spreadsheets_data

description: File contains data used to plot the graphs in the figures.
DOI: 10.6084/m9.figshare.22180255
title: Figures spreadsheets_data

description: File contains data used to plot the graphs in the figures.
DOI: 10.6084/m9.figshare.23819358.v1
title: Source data

description: The data source for all the figures in the manuscript
DOI: 10.6084/m9.figshare.23819358
title: Source data

description: The data source for all the figures in the manuscript
DOI: 10.6084/m9.figshare.22820525.v1
title: Used datasets for "Inner core static tilt: Evidence from intradecadal oscillation in the Earth's rotation"

description: The used PM and LOD dataset in "Inner core static tilt: Evidence from intradecadal oscillation in the Earth's rotation". Those datasets have been preprocessed.
DOI: 10.6084/m9.figshare.22820525
title: Used datasets for "Inner core static tilt: Evidence from intradecadal oscillation in the Earth's rotation"

description: The used PM and LOD dataset in "Inner core static tilt: Evidence from intradecadal oscillation in the Earth's rotation". Those datasets have been preprocessed.
DOI: 10.6084/m9.figshare.24294961.v1
title: The separation pin distinguishes the pro– and anti–recombinogenic functions of Saccharomyces cerevisiae Srs2

description: This excel file contains information associated with our manuscript, including (1) all raw data values for all figures, (2) gel images corresponding to all biochemical experiments, and (3) all kymographs associated with the single molecule experiments. All information is organized by figure number, and each figure number has its own sheet within the excel file.
DOI: 10.6084/m9.figshare.24296956.v1
title: Senescence-associated 13-HODE production promotes age-related liver steatosis by directly inhibiting catalase activity

description: The dataset contains the source data of the study "Senescence-associated 13-HODE production promotes age-related liver steatosis by directly inhibiting catalase activity"
DOI: 10.6084/m9.figshare.24294961
title: The separation pin distinguishes the pro– and anti–recombinogenic functions of Saccharomyces cerevisiae Srs2

description: This excel file contains information associated with our manuscript, including (1) all raw data values for all figures, (2) gel images corresponding to all biochemical experiments, and (3) all kymographs associated with the single molecule experiments. All information is organized by figure number, and each figure number has its own sheet within the excel file.
DOI: 10.6084/m9.figshare.24296956
title: Senescence-associated 13-HODE production promotes age-related liver steatosis by directly inhibiting catalase activity

description: The dataset contains the source data of the study "Senescence-associated 13-HODE production promotes age-related liver steatosis by directly inhibiting catalase activity"
DOI: 10.6084/m9.figshare.24270091
title: data.csv

description: The research is about classifying snow and glacier features to achieve better accuracy over traditional Machine Learning algorithms by employing Deep-Learning algorithms
DOI: 10.6084/m9.figshare.24270091.v1
title: data.csv

description: The research is about classifying snow and glacier features to achieve better accuracy over traditional Machine Learning algorithms by employing Deep-Learning algorithms
DOI: 10.6084/m9.figshare.24781446
title: Supplementary Material for: Recurrent mutations in Refractory/Relapsed Diffuse Large B cell Lymphoma by targeted gene sequencing

description: Introduction-Whole genome sequencing of diffuse large B-cell lymphoma [DLBCL] has identified recurrent mutations involved in pathogenesis and potentially affecting response to therapy. In this pilot study, a targeted gene panel was created to identify mutations associated with relapse/refractoriness.
Material and methods- A 14-gene targeted panel was designed to sequence thirteen patients who were in remission and nine eight cases that had relapsed/refractory to treatment. A paired diagnostic biopsy and a relapse biopsy were sequenced to find genes repeatedly altered in relapse. 
Results- A total of 751 nonsynonymous and truncating mutations were identified. Truncated mutations in NOTCH1, TNFAIP3, and CD58 were associated with poor treatment outcomes. In cases that did not respond to treatment, a high number of mutations were found in the EZH2 gene, followed by the DNA-binding domain of TP53 and MYD88. Termination mutations in the intracellular domain of NOTCH were found in 75% of non-responsive cases. Co-occurrence of loss of function mutations of TNFAIP3 and missense mutations in MYD88 was associated with a non-responsive cohort. 
Discussion-The study highlights mutations associated with chemotherapeutic response in DLBCL with implications for initial diagnostic biopsy response prediction.
DOI: 10.6084/m9.figshare.24771876.v1
title: Ecosystem services Vulnerability Index: A novel framework to assess the vulnerability of species delivering ES (Supplementary Information)

description: Ecosystem Services Vulnerability Index (ESVI) has been developed to assess the vulnerability of wetland plants known to provide ecosystem services of economic importance. Data on plant distribution, ecosystem services, habitat characteristics, and lifecycle have been compiled through various databases, including the India Biodiversity Portal, the Global Biodiversity Information Facility, and from literature, including the book on aquatic plants of India. After that, through a literature review and database surveys, 272 of the species were found to provide ecosystem services of economic importance, which were compiled in this dataset.
DOI: 10.34740/kaggle/dsv/7159889
title: AutoXGB
DOI: 10.34740/kaggle/dsv/7159890
title: OnlineFree
DOI: 10.5281/zenodo.10317625
title: Draft genome sequence of Xylaria bambusicola isolate GMP-LS, the root and basal stem rot pathogen of sugarcane in Indonesia

description: Supplementary Figure 1
Supplementary Table 1
Supplementary Table 2
DOI: 10.5281/zenodo.10317624
title: Draft genome sequence of Xylaria bambusicola isolate GMP-LS, the root and basal stem rot pathogen of sugarcane in Indonesia

description: Supplementary Figure 1
Supplementary Table 1
Supplementary Table 2
DOI: 10.34740/kaggle/dsv/7159991
title: Egypt Gold Prices | Daily Updated
DOI: 10.5281/zenodo.10317444
title: VulSATDˆ{DS}: a dataset for vulnerabilities and self-admitted technical debt and its replication package

description: VulSATDˆ{DS} is a dataset of functions in C/C++ extracted from 12 open-source projects and labelled for the existence of self-admitted technical debt (SATD) and vulnerability. It was presented in the paper "VulSATDˆ{DS}: a dataset for vulnerabilities and self-admitted technical debt." This upload contains both the dataset (file: VulSATDDS.zip) and the replication package that allows the recreation of the dataset from its sources (replication.zip).
DOI: 10.5281/zenodo.10317445
title: VulSATDˆ{DS}: a dataset for vulnerabilities and self-admitted technical debt and its replication package

description: VulSATDˆ{DS} is a dataset of functions in C/C++ extracted from 12 open-source projects and labelled for the existence of self-admitted technical debt (SATD) and vulnerability. It was presented in the paper "VulSATDˆ{DS}: a dataset for vulnerabilities and self-admitted technical debt." This upload contains both the dataset (file: VulSATDDS.zip) and the replication package that allows the recreation of the dataset from its sources (replication.zip).