cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1408105.10fu
title: SH1408105.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408109.10fu
title: SH1408109.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408114.10fu
title: SH1408114.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408115.10fu
title: SH1408115.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.rts8e8
title: Occurrence Download

description: A dataset containing 4150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "TaxonKey is Ailanthus altissima"
 ]
}

 The dataset includes 4150 records from 189 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000116-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5zbeja
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "TaxonKey is Ramnogaster arcuata"
 ]
}

 The dataset includes 86 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000117-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18771765
title: Assembly and annotation of Pinot Noir

description: Pinot Noir is one of the world's most famous grapes, with its late ripening light ruby red fruit., was used for T2T genome assembly. A total of 33,349,412,693bp HiFi reads with ~ 65x coverage were generated by the PacBio platform. The preliminary assembly were conducted using Hifiasm on HiFi reads. A total of 83,958,664,800 bp of Hi-C reads with ~ 160× coverage were used to anchor and remove some short contigs using Juicer. 3D-DNA was then used to obtain the genome at the scaffold level. The two T2T gap-free haplotypes of the hybrid Pinot Noir, PN1 (473.43MB) and PN2 (467.09MB).To validate the quality of our assembly, K-mer and BUSCO were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 1.43%. BUSCO to evaluate genomic completeness, about 98.3% in PN1 and 98.4%in PN2 of the core conserved plant genes were found complete in the genome assembly. For genome annotation, the number of genes identified by the genome is similar, more than 37,000 genes were found for Pinot Noir, PN1 (37037) PN2 (37350).

The PN1 genome assembly: PNhap1.fa

The PN1gene annotation: PNhap1.gff3

The PN1 TE annotation: PNhap1.TE.gff

The PN2 genome assembly: PNhap2.fa

The PN2gene annotation: PNhap2.gff3

 The PN2 TE annotation: PNhap2.TE.gff
DOI: 10.15468/dl.t4h7cb
title: Occurrence Download

description: A dataset containing 2217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Sphaeranthus"
 ]
}

 The dataset includes 2217 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000119-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8080251
title: Assembly and annotation of Pinot Noir

description: Pinot Noir is one of the world's most famous grapes, with its late ripening light ruby red fruit., was used for T2T genome assembly. A total of 33,349,412,693bp HiFi reads with ~ 65x coverage were generated by the PacBio platform. The preliminary assembly were conducted using Hifiasm on HiFi reads. A total of 83,958,664,800 bp of Hi-C reads with ~ 160× coverage were used to anchor and remove some short contigs using Juicer. 3D-DNA was then used to obtain the genome at the scaffold level. The two T2T gap-free haplotypes of the hybrid Pinot Noir, PN1 (473.43MB) and PN2 (467.09MB).To validate the quality of our assembly, K-mer and BUSCO were conducted. We used K-mer to evaluate genomic heterozygosity, estimated 1.43%. BUSCO to evaluate genomic completeness, about 98.3% in PN1 and 98.4%in PN2 of the core conserved plant genes were found complete in the genome assembly. For genome annotation, the number of genes identified by the genome is similar, more than 37,000 genes were found for Pinot Noir, PN1 (37037) PN2 (37350).

The PN1 genome assembly: PNhap1.fa

The PN1gene annotation: PNhap1.gff3

The PN1 TE annotation: PNhap1.TE.gff

The PN2 genome assembly: PNhap2.fa

The PN2gene annotation: PNhap2.gff3

 The PN2 TE annotation: PNhap2.TE.gff
DOI: 10.5281/zenodo.18602483
title: Kinetic Human Movement Ontology

description: The Kinetic Human Movement Ontology (KHMO) is a representational artificat to encode knowledge about human anatomoical movement, using controlled terminologies from biomedical ontologies. KHMO is encoded in the Web Ontology Language (OWL) with a public PURL, http://w3id.org/khmo. The ontology models the contributing entities that are involved in motion of from one physical stance to another physical stance (ending stance). The ontology utilizes several major OBO Foundry ontologies' controlled terminologies to form this ontology artifact.
DOI: 10.5281/zenodo.18602482
title: Kinetic Human Movement Ontology

description: The Kinetic Human Movement Ontology (KHMO) is a representational artificat to encode knowledge about human anatomoical movement, using controlled terminologies from biomedical ontologies. KHMO is encoded in the Web Ontology Language (OWL) with a public PURL, http://w3id.org/khmo. The ontology models the contributing entities that are involved in motion of from one physical stance to another physical stance (ending stance). The ontology utilizes several major OBO Foundry ontologies' controlled terminologies to form this ontology artifact.
DOI: 10.5281/zenodo.18772607
title: The streamflow discharge, water chemical and isotopic data of the Binggou and Yakou catchments in 2017

description: This is the streamflow discharge, water chemical and isotopic data of the Binggou and Yakou catchments collected in 2017. This is the dataset used in the paper pubished on Journal of Hydrology: Regional Studies, which can be cited as Xiao, X., Zhang, F., Liu, F., Li, X., Shi, X., Zeng, C., & Che, T. (2025). Hillslope flow paths in snowmelt and rainfall seasons in permafrost-underlain areas, Northeastern Tibetan Plateau: Investigation based on hydrochemical tracers and end-member mixing analysis. Journal of Hydrology: Regional Studies, 60, 102511. https://doi.org/10.1016/j.ejrh.2025.102511
DOI: 10.5281/zenodo.5159520
title: The streamflow discharge, water chemical and isotopic data of the Binggou and Yakou catchments in 2017

description: This is the streamflow discharge, water chemical and isotopic data of the Binggou and Yakou catchments collected in 2017. This is the dataset used in the paper pubished on Journal of Hydrology: Regional Studies, which can be cited as Xiao, X., Zhang, F., Liu, F., Li, X., Shi, X., Zeng, C., & Che, T. (2025). Hillslope flow paths in snowmelt and rainfall seasons in permafrost-underlain areas, Northeastern Tibetan Plateau: Investigation based on hydrochemical tracers and end-member mixing analysis. Journal of Hydrology: Regional Studies, 60, 102511. https://doi.org/10.1016/j.ejrh.2025.102511
DOI: 10.5281/zenodo.18772654
title: LINF_340010000

description: Calcium channel protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18772653
title: LINF_340010000

description: Calcium channel protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.je3yvz
title: Occurrence Download

description: A dataset containing 428365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tyrannus melancholicus",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 428365 records from 598 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000051-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.94yq3q
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "TaxonKey is Ramnogaster melanostoma"
 ]
}

 The dataset includes 36 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000123-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzu58y
title: Occurrence Download

description: A dataset containing 10751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "MediaType is Image",
 "TaxonKey is Lythrum salicaria"
 ]
}

 The dataset includes 10751 records from 223 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000121-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uwmx5
title: Occurrence Download

description: A dataset containing 2592699 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet observations"
 ]
}

 The dataset includes 2592699 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000107-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efn2dn
title: Occurrence Download

description: A dataset containing 7179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Sphaerolobium"
 ]
}

 The dataset includes 7179 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000124-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31410779
title: Age-Related Differences in the One Target Advantage: Exploring the Impact of Augmented Sensory Feedback

description: The one-target advantage (OTA) refers to faster execution of single-target movements compared to the same movement embedded in a two-target reaching sequence. While well documented in younger adults, little is known about OTA in older adults with age-related motor changes. This study examined whether augmented sensory feedback modulates goal-directed aiming during the OTA paradigm. Thirty right-handed participants (15 younger, 15 older adults) performed one- and two-target aiming tasks under vibrotactile (VT), auditory (A), and no-feedback (NF) conditions. Results showed that reaction time was shorter in the two-target task than in the one-target task under VT feedback (<i>p</i> = .002). Older adults demonstrated significantly shorter movement times with VT than with NF. Older adults showed greater undershooting in the two-target task under NF, which was reduced with VT feedback (<i>p</i> = .011). Additionally, older adults typically spent longer in the time after peak velocity, but VT feedback significantly reduced this duration. Overall, VT feedback improved both temporal and spatial measures, particularly for older adults. Auditory feedback showed limited effects, influencing only TAPV1 (<i>p</i> = .036). Together, these results highlight the potential of VT feedback to mitigate age-related motor performance declines.
DOI: 10.6084/m9.figshare.31410779.v1
title: Age-Related Differences in the One Target Advantage: Exploring the Impact of Augmented Sensory Feedback

description: The one-target advantage (OTA) refers to faster execution of single-target movements compared to the same movement embedded in a two-target reaching sequence. While well documented in younger adults, little is known about OTA in older adults with age-related motor changes. This study examined whether augmented sensory feedback modulates goal-directed aiming during the OTA paradigm. Thirty right-handed participants (15 younger, 15 older adults) performed one- and two-target aiming tasks under vibrotactile (VT), auditory (A), and no-feedback (NF) conditions. Results showed that reaction time was shorter in the two-target task than in the one-target task under VT feedback (<i>p</i> = .002). Older adults demonstrated significantly shorter movement times with VT than with NF. Older adults showed greater undershooting in the two-target task under NF, which was reduced with VT feedback (<i>p</i> = .011). Additionally, older adults typically spent longer in the time after peak velocity, but VT feedback significantly reduced this duration. Overall, VT feedback improved both temporal and spatial measures, particularly for older adults. Auditory feedback showed limited effects, influencing only TAPV1 (<i>p</i> = .036). Together, these results highlight the potential of VT feedback to mitigate age-related motor performance declines.
DOI: 10.15468/dl.kee3m3
title: Occurrence Download

description: A dataset containing 10703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "Geometry POLYGON((\n 5.87 47.27,\n 15.03 47.27,\n 15.03 55.06,\n 5.87 55.06,\n 5.87 47.27\n ))"
 ]
}

 The dataset includes 10703 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000125-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18760017
title: DPP Data Attribute List and Respective Relationships for EoL NdFeB Magnet Processing

description: Digital product passports (DPPs) serve as a critical enabler for circular economy practices by delivering comprehensive product data, with enhanced transparency in the end-of-life (EoL) phase proving particularly beneficial for efficient recovery and recycling. The European Union (EU) targets permanent magnets, especially neodymium-iron-boron (NdFeB) magnets, for DPP implementation, as they represent a vital secondary source of elements for applications in the pharmaceutical, chemical, and ammonia industry – as exemplified by the NEO‑CYCLE upcycling initiative. This work aims to define comprehensive data requirements that foster circular economy practices for products containing NdFeB magnets while ensuring regulatory compliance. The research integrates three key data sources: a literature review of established concepts, an analysis of pertinent legal frameworks, and stakeholder input from the NEO-CYCLE project via structured interviews. Results show that relatively little yet important research has been done in the realm of data requirements for sustainable EoL processing of NdFeB magnets. Although the product data is largely covered by the legal approaches of the EU, the necessity to process and transfer this product data along the supply chain emerges. This highlights the necessity for batch-based digital material passports (DMPs) to preserve informational value amid magnet mixing, relying on automated scanning and tracking for efficient data consolidation. Anticipated challenges include establishing standardized ontologies with precise attributes and protocols, alongside the resulting data uncertainty of mixing DPP-equipped products with non-equipped ones. Future research should therefore prioritize addressing these challenges to enable scalable EoL NdFeB magnet processing in line with EU circular economy goals.
DOI: 10.15468/dl.und3tp
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Aves, Insecta)",
 "Geometry MULTIPOLYGON (((18.52487 3.041515, 18.52539 3.090067, 18.5154 3.090067, 18.51532 3.081975, 18.50533 3.081975, 18.5049 3.041515, 18.52487 3.041515)))"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000128-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18760016
title: DPP Data Attribute List and Respective Relationships for EoL NdFeB Magnet Processing

description: Digital product passports (DPPs) serve as a critical enabler for circular economy practices by delivering comprehensive product data, with enhanced transparency in the end-of-life (EoL) phase proving particularly beneficial for efficient recovery and recycling. The European Union (EU) targets permanent magnets, especially neodymium-iron-boron (NdFeB) magnets, for DPP implementation, as they represent a vital secondary source of elements for applications in the pharmaceutical, chemical, and ammonia industry – as exemplified by the NEO‑CYCLE upcycling initiative. This work aims to define comprehensive data requirements that foster circular economy practices for products containing NdFeB magnets while ensuring regulatory compliance. The research integrates three key data sources: a literature review of established concepts, an analysis of pertinent legal frameworks, and stakeholder input from the NEO-CYCLE project via structured interviews. Results show that relatively little yet important research has been done in the realm of data requirements for sustainable EoL processing of NdFeB magnets. Although the product data is largely covered by the legal approaches of the EU, the necessity to process and transfer this product data along the supply chain emerges. This highlights the necessity for batch-based digital material passports (DMPs) to preserve informational value amid magnet mixing, relying on automated scanning and tracking for efficient data consolidation. Anticipated challenges include establishing standardized ontologies with precise attributes and protocols, alongside the resulting data uncertainty of mixing DPP-equipped products with non-equipped ones. Future research should therefore prioritize addressing these challenges to enable scalable EoL NdFeB magnet processing in line with EU circular economy goals.
DOI: 10.15468/dl.an7dyk
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Diphylla ecaudata"
 ]
}

 The dataset includes 269 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000130-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.