cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3739898_d11.v1
title: Additional file 9: Table S1. of Quantitative proteomic analysis of Parkin substrates in Drosophila neurons

description: All proteins identified: Details of all proteins identified in the whole mass spectrometry analysis. Proteins are divided in Background and Hits (Ubiquitinated). (XLS 2430 kb)
DOI: 10.6084/m9.figshare.c.3734206_d10.v1
title: Additional file 6: Table S5. of Genome-wide analysis of microRNA targeting impacted by SNPs in cucumber genome

description: The predicted targets for conserved and cucumber-specific miRNA. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3725017_d12.v1
title: Additional file 8: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ  s disease: a comparison of 33 human and animal studies

description: Hierarchical clustering of studies based on the most highly differentially expressed genes in each study, complete linkage. (XLSX 154Â kb)
DOI: 10.6084/m9.figshare.c.3725017_d6.v1
title: Additional file 2: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ  s disease: a comparison of 33 human and animal studies

description: Concordance results for different subgroups using biological pathway enrichment analysis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3723001_d1.v1
title: Additional file 1 of Truke, a web tool to check for and handle excel misidentified gene symbols

description: Ziemannâ  s supplementary file. Tab-separated, plain text version of the Ziemann et al. [2] supplementary file. (TSV 148 kb)
DOI: 10.15468/69js7b
title: A recent inventory of the bats of Mozambique with documentation of seven new species for the country

description: This dataset contains the digitized treatments in Plazi based on the original journal article Monadjem, Ara, Schoeman, M. Corrie, Reside, April, P Io, Dorothea V., Stoffberg, Samantha, Bayliss, Julian, (Woody) Cotterill, F. P. D., Curran, Michael, Kopp, Mirjam, Taylor, Peter J. (2010): A recent inventory of the bats of Mozambique with documentation of seven new species for the country. Acta Chiropterologica 12 (2): 371-391, DOI: 10.3161/150811010X537963
DOI: 10.6084/m9.figshare.c.3714226_d20.v1
title: Additional file 9: of Integrated analysis of genetic, behavioral, and biochemical data implicates neural stem cell-induced changes in immunity, neurotransmission and mitochondrial function in Dementia with Lewy Body mice

description: ModuleAnnotation_GOenrichmentWGCNA. Supplemantary Gene Ontology Annotation performed in WGCNA. This file contains the first 25 most significant annotation terms for each module based on Gene Ontology gene sets enrichment analysis implemented in WGCNA. Columns in the file are labeled as followed: rank of the significant result (rank), module number (module), module size (modSize), the number of gene from the module that are included in the analysis (bkgrModSize), the size of GO gene set (bkgrTermSize), the number of overlapping genes from the module with GO gene set (nModGenesInTerm), ratio of overlapping gene (nModGenesInTerm) and size of effective module (bkgrModSize), ratio of overlapping gene nModGenesInTerm) and size of GO gene set, enrichment P value, Bonferroni corrected P, GO ID (termID), GO term, GO term name and GO term definition. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.c.3711706_d4.v1
title: Additional file 13: of Exploration of haplotype research consortium imputation for genome-wide association studies in 20,032 Generation Scotland participants

description: GS_HRC_imputed_Waist_Hip_Ratio_significant_SNPS. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3698212_d6.v1
title: MOESM3 of AutoDock VinaXB: implementation of XBSF, new empirical halogen bond scoring function, into AutoDock Vina

description: Additional file 3. PDB IDs that has halogen bond using Chlorine.
DOI: 10.5255/ukda-sn-854404
title: The impact of Thatcherite social and economic policies on the lives of British people 1958-2012

description: As part of a project exploring the impact of Thatcherite social and economic policies on the lives of British people, we have merged together key variables from the British Cohort Study so that longitudinal data analyses over several years and decades are more easily available. The variables included relate to housing, schooling, employment, offending and victimisation, welfare, social and political attitudes and similar variables. This exercise was repeated for the National Child Development Study so as to provide a point of comparison. The data are not being made available here, but we have provided a narrative count of how we merged these two longitudinal data sets so that each data set had a longitudinal version of some of the data from birth to the year 2012.
DOI: 10.6084/m9.figshare.c.3686734_d2.v1
title: Additional file 32: Figure S2 of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis

description: Meta-analysis of no response. (PNG 50 kb)
DOI: 10.6084/m9.figshare.c.3686734_d1.v1
title: Additional file 2: of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis

description: List of excluded trials. (TXT 2726 kb)
DOI: 10.6084/m9.figshare.c.3686734_d12.v1
title: Additional file 3: Table S1. of Selective serotonin reuptake inhibitors versus placebo in patients with major depressive disorder. A systematic review with meta-analysis and Trial Sequential Analysis

description: Trial characteristics. (XLS 88 kb)
DOI: 10.6084/m9.figshare.c.3661871_d5.v1
title: Additional file 2: of Integrated mRNA and microRNA analysis identifies genes and small miRNA molecules associated with transcriptional and post-transcriptional-level responses to both drought stress and re-watering treatment in tobacco

description: List of differentially expressed genes between WL and DL (WL vs. DL) in tobacco leaves. (XLSX 118 kb)
DOI: 10.6084/m9.figshare.c.3659060_d2.v1
title: Additional file 2: File S2. of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: Partial glycoprotein B nucleotide sequence (SuHV1) isolated from Lynx pardinus. (XML 42 kb)
DOI: 10.6084/m9.figshare.c.3659060_d1.v1
title: Additional file 1: Table S1. of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: Primers used for SuHV1 amplification. (XML 90 kb)
DOI: 10.6084/m9.figshare.c.3658967_d2.v1
title: Additional file 6: Table S6. of Transcriptome profiling reveals the genetic basis of alkalinity tolerance in wheat

description: Differentially expressed genes between SR4 and JN177 under non-alkalinity or alkalinity stress. (XLS 1230 kb)
DOI: 10.6084/m9.figshare.c.3648623_d6.v1
title: Additional file 4: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Comparison of top 40 predictions of T3SS effectors in S. Typhimurium, E. coli, P. syringae, and S. dysenteriae by EffectiveT3, T3MM, BPBAac, and GenSET 1. EffectiveT3 program was from Arnold et al. 2009 [10]; T3MM program was from Wang et al., 2013 [16]; and BPBAac program was from Wang et al., 2011 [12]; GenSET data was from this study. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3648623_d2.v1
title: Additional file 3: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Top 40 predictions of T3SS effectors for Phase 1 and Phase 2 by GenSET. Each protein in the testing sets were given a value (true probability) based on the training (voting) algorithm that takes the average of the probabilities given by the five algorithms. The proteins were then ranked based on size of the averaged true probability. Only the top 40 proteins with scores of 0.5 and above are listed. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3648623_d3.v1
title: Additional file 2: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Algorithm performance of five organisms using the filtered and unfiltered data sets for GenSET Phase 1 and Phase 2 studies. (PPV: precision value; TPR: sensitivity; SPC: specificity; AUC: area under the curve). (XLSX 1150 kb)
DOI: 10.6084/m9.figshare.c.3648623_d5.v1
title: Additional file 6: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Positive (effectors), negative (non-effectors), and testing sets of the five organisms that we used in the GenSET studies. (ALL Tags denotes all proteins encoded in the genome; Positive Set denotes known effector proteins used for training; Negative Set denotes non-effector proteins used for training; Testing Set denotes all proteins in the bacteria minus the Positive and Negative Sets; Positives in Testing Set denotes known effector proteins included in the Testing Set). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3648623_d1.v1
title: Additional file 5: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: A brief protocol on the setting up GenSET for T3SS effector prediction customized for other gram-negative genomes. (XLSX 40 kb)
DOI: 10.5281/zenodo.3944635
title: Data repository: Cytotype distributions of the common Dandelion (Taraxacum section Ruderalia) and the Cuckoo flower (Cardamine pratensis) in Europe and how these are affected by climate change

description: This map contains all datasets and R-scripts used to write the paper with the same name. This map also contains the original research proposal on which the datasets are based. The datasets contain location data on the cytotypes of the common Dandelion and the Cuckoo flower in Europe. The data has been collected using a meta-analysis. The R-scripts present are for data preparation, SDM's for current and future scenarios and bioclimatic variable preparation.
DOI: 10.21227/wfr9-m145
title: Data and Code for Paper – Improving Vis Design for Effective Multi-objective Decision Making

description: Decision-makers across many professions are often required to make multi-objective decisions over increasingly larger volumes of data with several competing criteria. Data visualization is a powerful tool for exploring these complex ‘solution spaces’, but there is little research on its ability to support multi-objective decisions. In this paper, we explore the effects of visualization design and data volume on decision quality in multi-objective scenarios with complex trade-offs. We look at the impact of four common multidimensional chart types (scatter plot matrices, parallel coordinates, heat maps, radar charts), the number of options and dimensions, the ratio of number of dimensions considered to the number of dimensions shown, and participant demographics on decision time and accuracy when selecting the ‘optimal option’. As objectively evaluating the quality of multi-objective decisions and the trade-offs involved is challenging, we employ rank- and score-based accuracy metrics. Our findings show that accuracy is comparable across all four visualizations, but that it improves when users are shown less options and consider less dimensions in their decision. Similarly, considering less dimensions imparts a speed advantage, with heat maps being the fastest among the four charts types. Participants who use charts frequently were observed to perform significantly faster, suggesting that users can potentially be trained to effectively use visualizations in their decision-making.
DOI: 10.5281/zenodo.3944634
title: Data repository: Cytotype distributions of the common Dandelion (Taraxacum section Ruderalia) and the Cuckoo flower (Cardamine pratensis) in Europe and how these are affected by climate change

description: This map contains all datasets and R-scripts used to write the paper with the same name. This map also contains the original research proposal on which the datasets are based. The datasets contain location data on the cytotypes of the common Dandelion and the Cuckoo flower in Europe. The data has been collected using a meta-analysis. The R-scripts present are for data preparation, SDM's for current and future scenarios and bioclimatic variable preparation.
DOI: 10.6084/m9.figshare.c.3645494_d7.v1
title: Additional file 8: Table S5. of Construction of high-resolution genetic maps of Zoysia matrella (L.) Merrill and applications to comparative genomic analysis and QTL mapping of resistance to fall armyworm

description: Syntenic relationship of Cavalier linkage groups and rice chromosomes. (XLS 177 kb)
DOI: 10.6084/m9.figshare.c.3643982_d3.v1
title: Additional file 1: Table S1. of Polymorphism in microRNA-binding site in HNF1B influences the susceptibility of type 2 diabetes mellitus: a population based caseâ  control study

description: PCR primers used for subcloning and introduction of nucleotide changes in 3â ˛UTR of HNF1B. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3643904_d13.v1
title: Additional file 4: Table S2. of Mining kidney toxicogenomic data by using gene co-expression modules

description: List of genes associated with 137 co-expression modules. (XLSX 1398 kb)
DOI: 10.15468/chb7fu
title: Late Middle Eocene bats from the Creechbarrow Limestone Formation, Dorset, southern England with description of a new species of Archaeonycteris (Chiroptera: Archaeonycteridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Harrison, David L., Hooker, Jeremy J. (2010): Late Middle Eocene bats from the Creechbarrow Limestone Formation, Dorset, southern England with description of a new species of Archaeonycteris (Chiroptera: Archaeonycteridae). Acta Chiropterologica 12 (1): 1-18, DOI: 10.3161/150811010X504554
DOI: 10.6084/m9.figshare.c.3642758_d2.v1
title: MOESM1 of Identification of epitopes recognised by mucosal CD4+ T-cell populations from cattle experimentally colonised with Escherichia coli O157:H7

description: Additional file 1. Details of EHEC O157 protein sequences for epitope mapping. Names and accession numbers of 16 EHEC O157 protein sequences used to synthesise peptides for T-cell epitope mapping.
DOI: 10.15468/6wpyzn
title: Taxonomy of Rhinolophus yunanensis Dobson, 1872 (Chiroptera: Rhinolophidae) with a description of a new species from Thailand

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wu, Yi, Harada, Masashi, Motokawa, Masaharu (2009): Taxonomy of Rhinolophus yunanensis Dobson, 1872 (Chiroptera: Rhinolophidae) with a description of a new species from Thailand. Acta Chiropterologica 11 (2): 237-246, DOI: 10.3161/150811009X485486
DOI: 10.15468/rar286
title: Taxonomic revision of the genus Asellia (Chiroptera: Hipposideridae) with a description of a new species from southern Arabia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Benda, Petr, Vallo, Peter, Reiter, Antonín (2011): Taxonomic revision of the genus Asellia (Chiroptera: Hipposideridae) with a description of a new species from southern Arabia. Acta Chiropterologica 13 (2): 245-270, DOI: 10.3161/150811011X624749
DOI: 10.6084/m9.figshare.c.3637583_d2.v1
title: Additional file 1: Table S1. of Context dependent regulatory patterns of the androgen receptor and androgen receptor target genes

description: Supernatant PSA assay. Various cell lines were stimulated with different combinations of growth factors and in several co-cultures. Represented here is a selection of these samples. Concentrations: R1881 (10 nm), FGF7 (10 ng/ml), PD98059 MAPKK inhibitor (30 mM), EGF (5 ng/ml) and co-culture with 50-75 % EPT1B8 cells. + denotes added growth factor. Mesenchymal EPT1 cells with p63KD (p63 knockdown), CDH1 or ΔNp63α are described in [14]. (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3635528_d5.v1
title: Additional file 7: Table S5. of A quantitative shotgun proteomics analysis of germinated rice embryos and coleoptiles under low-temperature conditions

description: Enriched GO terms of the differentially expressed proteins in the resistant response of Tong887 and the susceptible response of Milyang23. (XLSX 70025 kb)
DOI: 10.6084/m9.figshare.c.3635552_d4.v1
title: Additional file 1: of Cancer biomarker discovery is improved by accounting for variability in general levels of drug sensitivity in pre-clinical models

description: Supplementary Tables. (XLSX 3814 kb)
DOI: 10.6084/m9.figshare.c.3635009_d1.v1
title: Additional file 1: of Comparison of Kompetitive Allele Specific PCR (KASP) and genotyping by sequencing (GBS) for quality control analysis in maize

description: Summary of the 200 KASP SNPs used for genotyping. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3632447_d3.v1
title: Additional file 7: Table S7. of Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures

description: Overlap of pathways and commonalities between two different types of preparations (brain and culture) and between two different brain regions (cortex and hippocampus). (XLSX 237 kb)
DOI: 10.6084/m9.figshare.c.3630893_d3.v1
title: Additional file 2: of Systematic review of health state utility values for economic evaluation of colorectal cancer

description: Summary of reporting HSUVs in CRC. (XLSX 17.6 KB)
DOI: 10.6084/m9.figshare.c.3627893_d1.v1
title: Additional file 2: of Leveraging local ancestry to detect gene-gene interactions in genome-wide data

description: R script and corresponding input files to perform 1Â Â° of freedom interaction test between ancestry segments. (ZIP 40Â kb)
DOI: 10.6084/m9.figshare.c.3627230_d2.v1
title: Additional file 2: Table S2. of Abundant RNA editing sites of chloroplast protein-coding genes in Ginkgo biloba and an evolutionary pattern analysis

description: RNA editing sites of Ginkgo biloba chloroplast protein-coding genes. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3627071_d5.v1
title: Additional file 4: of A comparative view of early development in the corals Favia lizardensis, Ctenactis echinata, and Acropora millepora - morphology, transcriptome, and developmental gene expression

description: C.echinata transcriptome annotation. Results of blastx search (e
DOI: 10.6084/m9.figshare.c.3625700_d2.v1
title: Additional file 4: Table S2. of Gender differences in murine pulmonary responses elicited by cellulose nanocrystals

description: KEGG pathway enrichment analysis of up and down-regulated genes in the lungs of male and female mice exposed to CNC. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3625049_d2.v1
title: MOESM4 of Integration event induced changes in recombinant protein productivity in Pichia pastoris discovered by whole genome sequencing and derived vector optimization

description: Additional file 4. Primer sequences.
DOI: 10.6084/m9.figshare.c.3623669_d1.v1
title: Additional file 1: Table S1. of Reclassification of the taxonomic status of SEMIA3007 isolated in Mexico B-11A Mex as Rhizobium leguminosarum bv. viceae by bioinformatic tools

description: Complete genomes and drafts. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3623570_d4.v1
title: Additional file 5 of Evaluating tools for transcription factor binding site prediction

description: Evaluation of search tools using PWMs generated from the ENCODE-ChIP-Seq data using rGADEM. Sensitivity, Positive predictive value, Geometric accuracy and False positive rate for the 12 TFBSs that are found in the PAZAR-E dataset. Separate sheets are provided for each of the search tools. (XLS 29.5 kb)
DOI: 10.6084/m9.figshare.c.3623570_d5.v1
title: Additional file 1 of Evaluating tools for transcription factor binding site prediction

description: The PAZAR Reference Dataset. Entries from PAZAR, with the numbers of each TFBS that they contain. The spreadsheet also indicates whether the TFBSs are found in JASPAR and/or the ENCODE-ChIP-Seq data. (XLS 54 kb)
DOI: 10.6084/m9.figshare.c.3623570_d3.v1
title: Additional file 3 of Evaluating tools for transcription factor binding site prediction

description: Motif Discovery Tool Performance. Complete results for individual PWMs generated using different motif discovery tools and scanned against PAZAR-E data using the FIMO motif scanning tool. (XLS 14 kb)
DOI: 10.6084/m9.figshare.c.3623570_d1.v1
title: Additional file 2 of Evaluating tools for transcription factor binding site prediction

description: Evaluation of search tools using JASPAR.2010 PWMs. Sensitivity, Positive predictive value, Geometric accuracy and False positive rate for the 14 TFBSs that are found in the PAZAR-J dataset. Separate sheets are provided for each of the search tools. (XLS 31.5 kb)
DOI: 10.17632/kbhb7cpvfb.1
title: Dataset for understanding the information dissemination trends, public perception and attitudes to COVID-19 pandemic among Nigerians

description: This data article describes the information dissemination trends, public perception and attitudes to COVID-19 pandemic among Nigerians. These data were gathered from Twitter users in the country. These data include the timestamp, user handle, tweets, retweets, COVID-19 confirmed cases and death toll in Nigeria between a week before the first reported case in Nigeria and few days into the commencement of lockdown relaxation in the country. These data might serve as a reference source to capture early pandemic detection, a real-time method of pandemic surveillance to monitor information spread, and examine content of public perception and attitude
DOI: 10.17632/6r4z88wh9h.1
title: Raw data for COVID-19 forecasting

description: Cross-sectional Analysis and Data-driven Forecasting of COVID-19 in the United States
DOI: 10.6084/m9.figshare.c.3621890_d1.v1
title: Additional file 2: of KIR repertory in patients with hematopoietic diseases and healthy family members

description: Healthy Family Members – Supporting Information. (XLS 69 kb)
DOI: 10.15468/qw392q
title: Recent surveys of bats (Mammalia: Chiroptera) from China. I. Rhinolophidae and Hipposideridae

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Libiao, Jones, Gareth, Zhang, Jinshuo, Zhu, Guangjian, Parsons, Stuart (2009): Recent surveys of bats (Mammalia: Chiroptera) from China. I. Rhinolophidae and Hipposideridae. Acta Chiropterologica 11 (1): 71-88, DOI: 10.3161/150811009X465703
DOI: 10.6084/m9.figshare.c.3620918_d2.v1
title: Additional file 3: of Systematic analysis of somatic mutations driving cancer: uncovering functional protein regions in disease development

description: iSiMPRe mini-website. The mini-website shows all identified SiMPRes together with the found annotations from various source databases (Pfam, UniProt, ELM, etc.). (ZIP 37 kb)
DOI: 10.17632/6pcvfr6jg8.1
title: Impact of female students’ perceptions on behavioural intention to use video conferring tools in COVID-19: Data of Vietnam

description: This paper presents the data set of factors affecting distance learning of Vietnamese female students which were collected in COVID-19 pandemic. This is significant because the Vietnamese government continues to encourage distance education after the pandemic, and also aims to ensure equity in education, especially gender equality in education. We show that this data set can be used for further researches comparing distance learning processes among countries at this period, and recommendations for distance education development policies in countries with similar backgrounds.
DOI: 10.6084/m9.figshare.c.3619505_d1.v1
title: Additional file 1 of Distributed gene expression modelling for exploring variability in epigenetic function

description: A single-node implementation of our code is provided for convenient reproduction of our experimental results. (ZIP 363 kb)