cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12866744.v1
title: Reconstructing the electrical structure of dust storms from locally observed electric field data

description: This is the dataset used in Zhang, H. and Zhou, Y. H.<br>Reconstructing the electrical structure of dust storms from locally observed electric field data. Nature Communications.<br>CSV files contain the raw electric field data for each dust storm. The names of these CSV files refer to the observed dust storms described in the paper. Each CSV file includes the raw electric field data for the components s1-s19 described in the paper.<br>
DOI: 10.7910/dvn/pp6qrq/12lsol
title: dss_person_events.tab

description: This file contains Vital status in the community following hospital dsicharge. To compute the one-year post-discharge mortality, this file has to be merged with Kilifi County Hospital (KCH) admissions (KCH_2007-2016_2-59monthsfinal.dta)
DOI: 10.7910/dvn/pp6qrq/ozvtrx
title: KCH__2007-2016_2-59months.tab

description: :unav
DOI: 10.7910/dvn/pp6qrq/tpeffn
title: Post-discharge_analysis.do

description: This STATA script was used to run all the post-discharge analysis (Table 3, Figure 2, Supplementary Table 6, Supplementary Table 7, Supplementary Table 8, Supplementary Figure 1)
DOI: 10.7910/dvn/pp6qrq/ljqozg
title: Inpatient_analysis.do

description: This STATA script was used to run all the inpatient analysis (Table 1, Table 2, Supplementary Table 1, Supplementary Table 2, Supplementary Table 3, Supplementary Table 4, Supplementary Table 5, Figure 1).
DOI: 10.7910/dvn/pp6qrq/trvbif
title: Talbert _et_al 2019_Mortality _Readme.txt

description: :unav
DOI: 10.7910/dvn/pp6qrq/5uldba
title: Talbert_2019_Mortality_Codebook.pdf

description: File contains variable descriptions, value labels and formats
DOI: 10.6084/m9.figshare.7827923
title: Supplemental: supplemental data for Novel genetic locus of visceral fat and systemic inflammation

description: Supplemental data for <i>'Novel genetic locus of visceral fat and systemic inflammation'</i><br>
DOI: 10.6084/m9.figshare.7827923.v3
title: Supplemental: supplemental data for Novel genetic locus of visceral fat and systemic inflammation

description: Supplemental data for <i>'Novel genetic locus of visceral fat and systemic inflammation'</i><br>
DOI: 10.6084/m9.figshare.5632267
title: The Effect of Cement and wrapping on the Decomposition rate of the Rabbit Carcasses

description: Taphonomic study was first time conducted in Kuala Lumpur, capital city of Malaysia. In this research model, male <em>Oryctolagus cunicullus</em> weighed 1.8-2.6 kg each were killed by Dolethal intravenously at the ear region. In Phase 1 study, eight subjects were wrapped in a sack and cemented within a container to be compared with the other four controls at each location labelled A (ground) and B (manmade freshwater pond). Phase 2 involved duplicating set of 15 cemented samples comparable to 1 control made up to total of 32 subjects which were all put into a compact polytank containing freshwater to simulate a case study. Taphonomic changes were observed and scored using TBS system incorporating of fresh stage, early decomposition stage, advanced decomposition stage and skeletonisation stage. The ambient temperature of surroundings with 28.81C±4.21°C and 29.21°C±4.57°C (mean±S.D.) while relative humidity of air with 74.49 %±14.61% and 79.15%±16.32% (mean±S.D.) were recorded for Phase 1 and Phase 2 study respectively. Time taken for ground control exposed and wrapped carcasses to reach first sign of skeletonised stage were four days and five days respectively. Whilst freshwater controls reached initial skeletonised stage within one week for exposed carcass and two weeks for wrapped carcass. Within the control and cemented sample carcasses, TBS scores increased from initial stages of decomposition and become plateau after advanced decomposition.
DOI: 10.6084/m9.figshare.5632264
title: Data from 'Pollutants in Plastics within the North Pacific Subtropical Gyre'

description: Dataset associated with Chen et al 2017 article published in Environmental Science and Technology. DOI: 10.1021/acs.est.7b04682<br>If you have questions, contact Julia Reisser at jureisser@gmail.com
DOI: 10.6084/m9.figshare.5632267.v1
title: The Effect of Cement and wrapping on the Decomposition rate of the Rabbit Carcasses

description: Taphonomic study was first time conducted in Kuala Lumpur, capital city of Malaysia. In this research model, male <em>Oryctolagus cunicullus</em> weighed 1.8-2.6 kg each were killed by Dolethal intravenously at the ear region. In Phase 1 study, eight subjects were wrapped in a sack and cemented within a container to be compared with the other four controls at each location labelled A (ground) and B (manmade freshwater pond). Phase 2 involved duplicating set of 15 cemented samples comparable to 1 control made up to total of 32 subjects which were all put into a compact polytank containing freshwater to simulate a case study. Taphonomic changes were observed and scored using TBS system incorporating of fresh stage, early decomposition stage, advanced decomposition stage and skeletonisation stage. The ambient temperature of surroundings with 28.81C±4.21°C and 29.21°C±4.57°C (mean±S.D.) while relative humidity of air with 74.49 %±14.61% and 79.15%±16.32% (mean±S.D.) were recorded for Phase 1 and Phase 2 study respectively. Time taken for ground control exposed and wrapped carcasses to reach first sign of skeletonised stage were four days and five days respectively. Whilst freshwater controls reached initial skeletonised stage within one week for exposed carcass and two weeks for wrapped carcass. Within the control and cemented sample carcasses, TBS scores increased from initial stages of decomposition and become plateau after advanced decomposition.
DOI: 10.6084/m9.figshare.5632243
title: On the academic disadvantage of low social class individuals: Material and databases (2 studies)

description: Data_Study1_MC.sav: Database (SPSS file) for Study 1.<br><br>Data_Study2_MC.sav: Database (SPSS file) for Study 2.<br>All_material.pdf: Material for both studies (full instructions to participants for each conditions + task items).
DOI: 10.6084/m9.figshare.5632222
title: Forecasting ILI Twitter Data

description: This data can be used to replicate influenza-like illness (ILI) nowcasting and forecasting experiments from Twitter.<br>
DOI: 10.6084/m9.figshare.5632243.v1
title: On the academic disadvantage of low social class individuals: Material and databases (2 studies)

description: Data_Study1_MC.sav: Database (SPSS file) for Study 1.<br><br>Data_Study2_MC.sav: Database (SPSS file) for Study 2.<br>All_material.pdf: Material for both studies (full instructions to participants for each conditions + task items).
DOI: 10.6084/m9.figshare.5632201
title: The efficacy of Life Review Therapy combined with Memory Specificity Training (LRT-MST) targeting cancer patients in palliative Care: a Randomized Controlled Trial

description: The aim of this study was to evaluate the efficacy of an intervention combining Life Review Therapy (LRT) and Memory Specificity Training (MST) (LRT-MST) to improve ego-integrity and despair among cancer patients in palliative care. In this multicentre randomized controlled trial, cancer patients in palliative care were randomized to the intervention group (LRT-MST; n=55) or waiting-list control group (n=52). LRT-MST is a 4-session home-based psychological intervention that aims to retrieve specific positive memories, to re-evaluate life events and to reconstruct the story of a patient’s life, including the diagnosis of incurable cancer. Outcome measures were ego-integrity and despair (NEIS), psychological distress, anxiety and depression (HADS), quality of life (EORTC QLQ-C15-PAL), and specificity of the autobiographical memory (AMT). NEIS, HADS and EORTC QLQ-C15-PAL were assessed at baseline (T0), 1 month later (post-treatment; T1), and at 1 month follow-up (T2). AMT was assessed at T0 and T1.
DOI: 10.6084/m9.figshare.5632210
title: Repeated Responses Datasets

description: 2017-11-24<br>The data contained in these files are responses to music collected over multiple listening sessions from four individual participants, Repeated Response Case Studies. They were collected in 2015 by Finn Upham at New York University as part of their PhD dissertation research in Music Technology. The data here shared is made public with the consent of participant.<br>During twelve sessions over six weeks, each participant listened to eleven musical stimuli (totally ~35 minutes) presented in random order via headphones in a sound insulated room. The responses of the participant were measured continuously with psychophysiological sensors during all sessions and continuous ratings of felt emotion (Valence x Arousal) during some session. Participants also reported their impressions and bodily events to each stimulus in a short post stimulus questionnaire.<br>
DOI: 10.6084/m9.figshare.5632201.v1
title: The efficacy of Life Review Therapy combined with Memory Specificity Training (LRT-MST) targeting cancer patients in palliative Care: a Randomized Controlled Trial

description: The aim of this study was to evaluate the efficacy of an intervention combining Life Review Therapy (LRT) and Memory Specificity Training (MST) (LRT-MST) to improve ego-integrity and despair among cancer patients in palliative care. <br> In this multicentre randomized controlled trial, cancer patients in palliative care were randomized to the intervention group (LRT-MST; n=55) or waiting-list control group (n=52). LRT-MST is a 4-session home-based psychological intervention that aims to retrieve specific positive memories, to re-evaluate life events and to reconstruct the story of a patient’s life, including the diagnosis of incurable cancer. Outcome measures were ego-integrity and despair (NEIS), psychological distress, anxiety and depression (HADS), quality of life (EORTC QLQ-C15-PAL), and specificity of the autobiographical memory (AMT). NEIS, HADS and EORTC QLQ-C15-PAL were assessed at baseline (T0), 1 month later (post-treatment; T1), and at 1 month follow-up (T2). AMT was assessed at T0 and T1.
DOI: 10.6084/m9.figshare.5632015
title: Areas and populations of urban settlements

description: Areas (record manually from the État-major map from the Géoportail, IGN : http://www.geoportail.gouv.fr/) and populations (from Cassini.fr database, Ldh-EHESS : http://cassini.ehess.fr/cassini/fr/html/1_navigation.php) of urban settlements of the North of France during the early 19th century.<br><br>This work takes place within a PhD in archaeology and geography - UMR 8504 Géographie-cités, Université Paris I - Panthéon-Sorbonne <br>
DOI: 10.6084/m9.figshare.5632000
title: Regulation of RNA polymerase III transcription during transformation of human IMR90 fibroblasts with defined genetic elements

description: RNA polymerase (Pol) III transcribes small untranslated RNAs that are essential for cellular homeostasis and growth. Its activity is regulated by inactivation of tumor suppressor proteins and overexpression of the oncogene c-MYC, but the concerted action of these tumor-promoting factors on Pol III transcription has not yet been assessed. In order to comprehensively analyse the regulation of Pol III transcription during tumorigenesis we employ a model system that relies on the expression of five genetic elements to achieve cellular transformation. Expression of these elements in six distinct transformation intermediate cell lines leads to the inactivation of TP53, RB1, and protein phosphatase 2A, as well as the activation of RAS and the protection of telomeres by TERT, thereby conducting to full tumoral transformation of IMR90 fibroblasts. Transformation is accompanied by moderately enhanced levels of a subset of Pol III-transcribed RNAs (7SK; MRP; H1). In addition, mRNA and/or protein levels of several Pol III subunits and transcription factors are upregulated, including increased protein levels of TFIIIB and TFIIIC subunits, of SNAPC1 and of Pol III subunits. Strikingly, the expression of POLR3G and of SNAPC1 is strongly enhanced during transformation in this cellular transformation model. Collectively, our data indicate that increased expression of several components of the Pol III transcription system accompanied by a 2-fold increase in steady state levels of a subset of Pol III RNAs is sufficient for sustaining tumor formation.
DOI: 10.6084/m9.figshare.5632000.v1
title: Regulation of RNA polymerase III transcription during transformation of human IMR90 fibroblasts with defined genetic elements

description: RNA polymerase (Pol) III transcribes small untranslated RNAs that are essential for cellular homeostasis and growth. Its activity is regulated by inactivation of tumor suppressor proteins and overexpression of the oncogene c-MYC, but the concerted action of these tumor-promoting factors on Pol III transcription has not yet been assessed. In order to comprehensively analyse the regulation of Pol III transcription during tumorigenesis we employ a model system that relies on the expression of five genetic elements to achieve cellular transformation. Expression of these elements in six distinct transformation intermediate cell lines leads to the inactivation of TP53, RB1, and protein phosphatase 2A, as well as the activation of RAS and the protection of telomeres by TERT, thereby conducting to full tumoral transformation of IMR90 fibroblasts. Transformation is accompanied by moderately enhanced levels of a subset of Pol III-transcribed RNAs (7SK; MRP; H1). In addition, mRNA and/or protein levels of several Pol III subunits and transcription factors are upregulated, including increased protein levels of TFIIIB and TFIIIC subunits, of SNAPC1 and of Pol III subunits. Strikingly, the expression of POLR3G and of SNAPC1 is strongly enhanced during transformation in this cellular transformation model. Collectively, our data indicate that increased expression of several components of the Pol III transcription system accompanied by a 2-fold increase in steady state levels of a subset of Pol III RNAs is sufficient for sustaining tumor formation.
DOI: 10.6084/m9.figshare.5632015.v1
title: Areas and populations of urban settlements

description: Areas (record manually from the État-major map from the Géoportail, IGN : http://www.geoportail.gouv.fr/) and populations (from Cassini.fr database, Ldh-EHESS : http://cassini.ehess.fr/cassini/fr/html/1_navigation.php) of urban settlements of the North of France during the early 19th century.<br><br>This work takes place within a PhD in archaeology and geography - UMR 8504 Géographie-cités, Université Paris I - Panthéon-Sorbonne <br>
DOI: 10.6084/m9.figshare.5632015.v3
title: Areas and populations of urban settlements

description: Areas (record manually from the État-major map from the Géoportail, IGN : http://www.geoportail.gouv.fr/) and populations (from Cassini.fr database, Ldh-EHESS : http://cassini.ehess.fr/cassini/fr/html/1_navigation.php) of urban settlements of the North of France during the early 19th century.<br><br>This work takes place within a PhD in archaeology and geography - UMR 8504 Géographie-cités, Université Paris I - Panthéon-Sorbonne <br>
DOI: 10.6084/m9.figshare.5632015.v2
title: Areas and populations of urban settlements

description: Areas (record manually from the État-major map from the Géoportail, IGN : http://www.geoportail.gouv.fr/) and populations (from Cassini.fr database, Ldh-EHESS : http://cassini.ehess.fr/cassini/fr/html/1_navigation.php) of urban settlements of the North of France during the early 19th century.<br><br>This work takes place within a PhD in archaeology and geography - UMR 8504 Géographie-cités, Université Paris I - Panthéon-Sorbonne <br>
DOI: 10.6084/m9.figshare.5631988
title: Data for Identifying influential neighbors in animal flocking

description: Schooling fish are an impressive group-level coordination in which multiple individualsmove together in a seamless way. This is possible because each individual in the groupresponds to the movement of other group members. But how many individuals doeseach fish pay attention to? Which are the influential neighbors? We need to answerthese questions if we want to understand how directional information propagates acrossa group. Our research shows that in the rummy-nose tetras species there is a limitednumber of influential neighbors which are not necessarily the closest ones.<br>The data set here contains all the data used in our research. There are three compressed zip files for experimental data of group of 2 fish, experimental data of group of 5 fish and null model data of group of 5 fish, respectively.<br>To use the data so as to interpret our research, let's take the group of 2 fish for an example. <br>First, unzip the file "UturnPositionData_2fish.zip" into a folder, then you'll find 1133 RData files. Which can group into 3 categories: position_uturns_fishNo_2_uturn_i.RData with i=1,2,...,1135; uturn_info_fishNo=2.Rdata and uturn_bad_fishNo=2.Rdata. <br>Second, now you can load the data with software R.You'll find that all the data are in dataframe. The position_uturns_fishNo_2_uturn_i.RData has the trajectory information around the U-turn events, while the uturn_info_fishNo=2.Rdata and uturn_bad_fishNo=2.Rdata contain the beginning and ending time information for the good U-turn events and the U-turn event IDs for the bad ones, respectively. The bad U-turn events are those with too much errors from the video tracking procedure thus we omitted in our analysis.<br>Third, then you can follow the methods in our manuscript and reproduce our results.<br>
DOI: 10.6084/m9.figshare.5631991
title: Stylet jaws of Chrysopetalidae (Annelida)

description: Micro-CT imaging elucidates jaw and pharynx structure in 14 nominal taxa belonging to Chrysopetalinae, Dysponetinae and Calamyzinae (Chrysopetalidae: Annelida). Systematic evaluation of chrysopetalid jaw form in each taxon is used to compare inter-generic relationships within and between each subfamily and with other polychaete families possessing lateral pairs of jaws. Jaw morphology proves diagnostic at all levels including agreement with current molecular phylogenetic analyses of the Chrysopetalidae. The greatest diversity of pharynx and jaw form, associated with sensory body characters, is found amongst taxa of the epibenthic Chrysopetalinae. It is hypothesized that the paired stylet jaws interlock to pierce prey tissue, and, in concert with a highly muscular pharynx, suck out prey fluids that pass down the internal groove of the stylets. Three generic groups are identified based on congruence of jaw form, and novel buccal structures are revealed in some taxa: a pharyngeal calcareous ‘ring’ and extensive pharyngeal glands. A continuum across free-living and facultative symbiont lifestyles is represented across all Chrysopetalinae. Dysponetinae comprises free-living, very small individuals that exhibit a meiofaunal lifestyle. All species possess one type of simple, tanned rod-like stylet jaws and certain simplified body structures. Calamyzinae species possess polyphyletic jaw forms and grades of radically simplified sensory morphologies. Free-living, bacteriovore calamyzins inhabit extreme chemosynthetic habitats and lack jaws, or possess modified jaws composed of an anterior platelet and posterior grooved jaw, present in the larvae and lost in the adult. New observations of an ectoparasitic Calamyzinae include details of a specialized mouth opening and stylet jaw present in a species that exhibits cryptic coloration, while grooved jaws are revealed for the first time in an obligate symbiont calamyzin. The grooved jaw form is considered a non-homoplasious synapomorphy that supports the monophyly of the family Chrysopetalidae.
DOI: 10.6084/m9.figshare.5631979
title: Box turtle personality dataset

description: Data from Kashon and Carlson "Consistently bolder turtles maintain higher body temperatures in the field but may experience greater predation risk", in review. Spreadsheet files each contain a sheet with data and a sheet with explanations of variables. See paper for complete explanation.
DOI: 10.6084/m9.figshare.5631991.v1
title: Stylet jaws of Chrysopetalidae (Annelida)

description: Micro-CT imaging elucidates jaw and pharynx structure in 14 nominal taxa belonging to Chrysopetalinae, Dysponetinae and Calamyzinae (Chrysopetalidae: Annelida). Systematic evaluation of chrysopetalid jaw form in each taxon is used to compare inter-generic relationships within and between each subfamily and with other polychaete families possessing lateral pairs of jaws. Jaw morphology proves diagnostic at all levels including agreement with current molecular phylogenetic analyses of the Chrysopetalidae. The greatest diversity of pharynx and jaw form, associated with sensory body characters, is found amongst taxa of the epibenthic Chrysopetalinae. It is hypothesized that the paired stylet jaws interlock to pierce prey tissue, and, in concert with a highly muscular pharynx, suck out prey fluids that pass down the internal groove of the stylets. Three generic groups are identified based on congruence of jaw form, and novel buccal structures are revealed in some taxa: a pharyngeal calcareous ‘ring’ and extensive pharyngeal glands. A continuum across free-living and facultative symbiont lifestyles is represented across all Chrysopetalinae. Dysponetinae comprises free-living, very small individuals that exhibit a meiofaunal lifestyle. All species possess one type of simple, tanned rod-like stylet jaws and certain simplified body structures. Calamyzinae species possess polyphyletic jaw forms and grades of radically simplified sensory morphologies. Free-living, bacteriovore calamyzins inhabit extreme chemosynthetic habitats and lack jaws, or possess modified jaws composed of an anterior platelet and posterior grooved jaw, present in the larvae and lost in the adult. New observations of an ectoparasitic Calamyzinae include details of a specialized mouth opening and stylet jaw present in a species that exhibits cryptic coloration, while grooved jaws are revealed for the first time in an obligate symbiont calamyzin. The grooved jaw form is considered a non-homoplasious synapomorphy that supports the monophyly of the family Chrysopetalidae.
DOI: 10.6084/m9.figshare.5631994.v1
title: Scripts, queries, and database tables to accompany Doube et al. 2018

description: R scripts and MySQL queries, along with raw measurements, spreadsheets and database tables that form the basis of figures 3-7 and tables 1-3 of Doube et al. 2018<br>
DOI: 10.6084/m9.figshare.5631994.v2
title: Scripts, queries, and database tables to accompany the preprint of Doube et al. 2018

description: R scripts and MySQL queries, along with raw measurements, spreadsheets and database tables that form the basis of figures 3-7 and tables 1-3 of Doube et al. 2018