cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.k9c31/100
title: 73_Magiafoglou_et_al_2002_Viability_and_cold_resistance

description: This data file contains mean and coefficient of variation (CV) of pupal to adult viability (%), mean egg to adult viability (%) and mean cold resistance (survival %) for Drosophila serrata populations collected before (14/12 populations) and after (10 populations) winter in 1999 (Fig. 2&3). Note longitudes in data are approximate. When using this data, please cite the original publication:
Magiafoglou, A., Carew, M. E. and Hoffmann, A. A. (2002). Shifting clinal patterns and microsatellite variation in Drosophila serrata populations: a comparison of populations near the southernborder of the species range. Journal of Evolutionary Biology 15: 763-774
DOI: 10.5061/dryad.k9c31/101
title: 52 Collinge et al. 2006, Heat knockdown time

description: This data file contains hardened and unhardened heat knockdown time (minutes) for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002 (Fig. 2). When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/6
title: 21_Kennington_&_Hoffmann_2013_Molecular_markers_&_In(2L)t_inversion

description: This data set contains haplotypes of 20 microsatellite loci located within and near the In(2L)t inversion and genotypes of the alcohol dehydrogenase (Adh) gene and the In(2L)t inversion (standard or inversion) for three Drosophila melanogaster populations collected in 2008 (Fig. 2&3). When using this data, please cite the original publication:Kennington, W Jason, and Hoffmann, Ary A (2013). Patterns of genetic variation across inversions: geographic variation in the In(2L)t inversion in populations of Drosophila melanogaster from eastern Australia. BMC Evolutionary Biology 13.
DOI: 10.5061/dryad.k9c31/93
title: 41_Umina_et_al_2005_In(3R)Payne_inversion

description: This data set contains frequencies of the inversion In(3R)Payne for 46 Drosophila melanogaster locations collected during 1978-1982 and for 34 locations collected during 2002-2004 (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:Umina, P. A., Weeks, A. R., Kearney, M. R., McKechnie, S. W., and Hoffmann, A. A. (2005). A Rapid Shift in a Classic Clinal Pattern in Drosophila Reflecting Climate Change. Science 308: 691-693
DOI: 10.5061/dryad.k9c31/94
title: 51_Collinge_et_al_2006_Cold_recovery_time

description: This data file contains cold recovery time (minutes) for D. melanogaster originating from a high and low altitude population at five latitudes (ten populations) collected in 2002 (Fig. 2). When using this data, please cite the original publication:Collinge, J. E., Hoffmann, A. A. and McKechnie, S. W. (2006). Altitudinal patterns for latitudinally varying traits and polymorphic markers in Drosophila melanogaster from eastern Australia. Journal of Evolutionary Biology 19: 473-482
DOI: 10.5061/dryad.k9c31/95
title: 72 Magiafoglou et al. 2002 Development time

description: This data file contains mean development time (hours) for female and male Drosophila serrata populations collected before (14 populations) and after (10 populations) winter in 1999 (Fig. 1). Note longitudes in data are approximate. When using this data, please cite the original publication:Magiafoglou, A., Carew, M. E. and Hoffmann, A. A. (2002). Shifting clinal patterns and microsatellite variation in Drosophila serrata populations: a comparison of populations near the southernborder of the species range. Journal of Evolutionary Biology 15: 763-774
DOI: 10.5061/dryad.k9c31/97
title: 79 Arthur et al. 2008 Development time

description: This data file contains egg-to-adult development time (hours) for 10 Drosophila simulans populations collected in 2004. For each population, 12-15 lines were tested (Fig. 4). Note longitudes in data are approximate. When using this data, please cite the original publication:Arthur, A. L., Weeks, A. R. and Sgrò, C. M. (2008). Investigating latitudinal clines for life history and stress resistance traits in Drosophila simulans from eastern Australia. Journal of Evolutionary Biology 21: 1470-1479
DOI: 10.5061/dryad.k9c31/98
title: 87 Barker 2013, Allozyme allele frequencies 67 populations

description: This data file contains allele frequencies of seven allozyme loci (phosphoglucomutase (Pgm), aldehyde oxidase (Aldox), hexosaminadase (Hex), alcohol dehydrogenase-1 (Adh-1), esterase-1 (Est-1) and esterase-2 (Est-2) and leucine aminopeptidase (Lap)) for 67 Drosophila buzzatii populations collected between 1972 and 1996. When using this data, please cite the original publication:Barker, J. Stuart F. (2013). Genetic history of a colonizing population: Drosophila buzzatii (Diptera: Drosophilidae) in Australia. Biological Journal of the Linnean Society 109: 682-698
DOI: 10.5061/dryad.k9c31/99
title: 91_Barker_et_al_2009_Microsatellite_markers

description: This data set contains raw genotypes of 15 microsatellite markers for 9 Drosophila buzzatiI populations collected in 2002. When using this data, please cite the original publication:Barker, J S F, Frydenberg, J, González, J, Davies, H I, Ruiz, A, Sørensen, J G, and Loeschcke, V (2009). Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii. Heredity 102: 389-401
DOI: 10.5061/dryad.kp57d/1
title: Chr 15_Aggression_Mapping_DataShare

description: Behavioral data for aggression analysis
DOI: 10.5061/dryad.n6p92/1
title: Creissen et al. 2015_FunctionalEcology

description: Phenotypic data for Arabidopsis thaliana plants grown under glasshouse conditions
DOI: 10.5061/dryad.qh8sh/18
title: SRA-locations.txt

description: Locations of raw sequence read files in the NCBI SRA.
DOI: 10.5061/dryad.t516f/1
title: TropForC-db

description: TropForC-db (zipped file), containing a series of cross-referenced data tables (.csv) describing (1) sites, (2) plots and their history, (3) measurements of C cycle variables, (4) variables, (5) disturbance/history event type, (6) plant functional types (PFTs)/ species, (7) methodology, and (8) allometries. Also included is a database bibliography and sample R code for joining the tables.
DOI: 10.5061/dryad.0nk1p/1
title: Iraq Injury Data
DOI: 10.5061/dryad.364pj/1
title: sample information

description: Information on the samples used in the study, including sample origin, sex, phenotypic measurements (pupal and adult weight, flight metabolic rate), treatments, and GEO accession numbers for two libraries used in RNA-seq analysis.
DOI: 10.5061/dryad.609j4/1
title: References cited in table
DOI: 10.5061/dryad.6rh3p/1
title: Imaginal disc Flp-induced expression patterns

description: This compressed file contains images from each of the ET-FLPx2 lines that show imaginal disc expression.
DOI: 10.5061/dryad.6sk0g/1
title: BEF_data
DOI: 10.5061/dryad.76r80/3
title: worker size-Gp9 genotype associations

description: Worker size (small and large) and Gp-9 genotype from 16 methanol-extract Green Beard assays.
DOI: 10.5061/dryad.80476/1
title: Face patch resting state maps

description: Uncorrected F-statistics for each face patch (AM, AF, AL, MF, ML, PL, PO) from the surface-based FFX group analysis, by hemisphere. These MGH files were generated using the freely available FreeSurfer package, a software application developed at the Martinos Center for Biomedical Imaging by the Laboratory for Computational Neuroimaging, available at  The MGH files can be opened with this program, and converted into other formats, for example for example Caret or AFNI, if necessary.
DOI: 10.5061/dryad.80476/2
title: Face patch resting state maps (single subjects)

description: Uncorrected F-statistics for each face patch (AM, AF, AL, MF, ML, PL, PO) for each subject, by hemisphere. These NIfTI files were generated using the freely available FreeSurfer package, a software application developed at the Martinos Center for Biomedical Imaging by the Laboratory for Computational Neuroimaging, available at , and files may be viewed using this software. The NIfTI files are four-dimensional. Each file contains six 3D maps, one per subject.
DOI: 10.5061/dryad.9ph68/1
title: Above-ground carbon density (ACD) data

description: This file includes the geographical coordinates and above-ground carbon density (ACD in Mg.ha-1) of 1771 forest plots in Madagascar.
DOI: 10.5061/dryad.9ph68/2
title: National forest carbon map for Madagascar

description: National forest carbon map at 250m for Madagascar for the year 2010. GeoTIFF raster file, 4.2 Mo, EPSG: 32738, 250m resolution, Int16.
DOI: 10.5061/dryad.9ph68/3
title: National carbon map for Madagascar

description: National carbon map for Madagascar for the year 2010. GeoTIFF raster file, 12.4 Mo, EPSG: 32738, 250m resolution, Int16. This map doesn't take into account the forest mask for the year 2010.
DOI: 10.5061/dryad.9ph68/4
title: Random Forests model

description: Random Forests model used to derive the national forest carbon map. R data file (.rda), 4.7 Mo.
DOI: 10.5061/dryad.b54gp/10
title: AD2Files

description: Matlab Struct array of data for subject AD2. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/11
title: AD3Files

description: Matlab Struct array of data for subject AD3. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/7
title: C2Files

description: Matlab Struct array of data for subject C2. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/8
title: FTD1Files

description: Matlab Struct array of data for subject FTD1. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.b54gp/9
title: FTD3Files

description: Matlab Struct array of data for subject FTD3. Contains raweyedata which is of the form [time pupilrecognition xposition(pix) yposition(pix)] , xdat which is the value associated with the image and trial which gives the trial letter for the given data.
DOI: 10.5061/dryad.bc111/1
title: SupplFig1

description: Relationship between number of reads from the 454 pyrosequencing run for ITS1 sequences of individuals of Veronica subgen. Pseudolysimachium and the number of distinct ribotypes found in a specific individual. Black diamonds correspond to tetraploid individuals, white to diploids and grey to individuals with unknown ploidy.
DOI: 10.5061/dryad.bc111/2
title: SupplFig2

description: Results of the Bayesian analysis of ITS data set. Tip labels refer to ribotypes as indicated in Supplementary Table 1. Numbers above the branches indicated posterior probabilities of analysis without outgroup/with outgroup.
DOI: 10.5061/dryad.bc111/5
title: Supplementary Table 1

description: Voucher information for samples used in the analyses of cpDNA (including GenBank accession numbers), ITS variation and genome size.
DOI: 10.5061/dryad.bc111/6
title: Supplementary Table 2

description: Information on the occurrence of ribotypes in specific samples and GenBank accession numbers used in this study. Names in column “individual” correspond to those given in Table 1.
DOI: 10.5061/dryad.bc111/7
title: Supplementary Table 3

description: Overview of ploidy levels and distribution of species and hybrids in V. subg. Pseudolysimachium
DOI: 10.5061/dryad.c555g/1
title: Age, oxidative stress and fitness in a long lived seabird

description: Dataset of oxidative stress exposure in European shags. Data were used to examine age-related change in oxidative stress exposure, and it's correlation to resighting of individuals in years subsequent to sampling. Adult data are contained in tab 1 and chick data in tab 2.
DOI: 10.5061/dryad.cp25h/1
title: Genotype data

description: 5291 SNPs of 523 accessions
DOI: 10.5061/dryad.d58b8/26
title: 346AT_R2

description: Second read pairs for Sample 346 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/27
title: 346REL_R1

description: First read pairs for Sample 346 AT-RE, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/28
title: 346REL_R2

description: Second read pairs for Sample 346 AT-RE, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/29
title: 346BT_R1

description: First read pairs for Sample 346 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/30
title: 346BT_R2

description: Second read pairs for Sample 346 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/31
title: 348BT_R1

description: First read pairs for Sample 348 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/32
title: 348BT_R2

description: Second read pairs for Sample 348 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/33
title: 349AT_R1

description: First read pairs for Sample 349 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.dq7qv/1
title: SupportingInformationS2

description: A Mathematica notebook containing mathematical derivations and code to generate all the figures in the paper.
DOI: 10.5061/dryad.dq7qv/2
title: SupportingInformationS3

description: A zip file with MATLAB computer code to generate the numerical solutions of all the figures in the paper.
DOI: 10.5061/dryad.fm36k/2
title: Brood Provisioning Data

description: This file contains data used in the LME analysis of brood provisioning rates, including 87 provisioning rate observations across the 36 common tern broods studied at two sites in three years.
DOI: 10.5061/dryad.fm36k/3
title: Individual Provisioning Data

description: This file contains data used in the analysis of individual provisioning rates vs. mass overshooting and recession, including 15 provisioning rate observations “prior to peak” and across the 36 common tern broods studied at two sites in three years.
DOI: 10.5061/dryad.fm36k/4
title: Bird Island 1971 three-period comparisons

description: This file contains provisioning data from Bird Island in 1971 used in in ESM 3 to demonstrate similarity in provisioning rate between three different time periods.
DOI: 10.5061/dryad.g9645/1
title: EnzymePlateData

description: Enzyme activity measurement data
DOI: 10.5061/dryad.g9645/2
title: ProteinPlateData

description: Protein content measurement data
DOI: 10.5061/dryad.gf151/1
title: Phenotypic data

description: Phenotypic data for the analyses of Heterophil to Lymphocyte ratios
DOI: 10.5061/dryad.gf151/2
title: Pedigree data

description: Pedigree data for the animal model analyses of heterophil to lymphocyte ratio
DOI: 10.5061/dryad.gf151/3
title: Data repeatability

description: Phenotypic data for the analyses of repeatability of Heterophil to Lymphocyte ratios
DOI: 10.5061/dryad.hf0rm/12
title: NASTRAN file of South Island giant moa (Dinornis robustus) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the South Island giant moa (Dinornis robustus)  specimen NMNZ S28225 analysed in the paper.
DOI: 10.5281/zenodo.6517799
title: Simulation data for the article "On the Effect of the Large Magellanic Cloud on the Orbital Poles of Milky Way Satellite Galaxies"

description: This archive contains the data shared in the context of the "On the Effect of the Large Magellanic Cloud on the Orbital Poles of Milky Way Satellite Galaxies" article. In particular, it contains the initial conditions and final snapshots of our N-body simulation.
DOI: 10.5281/zenodo.6517798
title: Simulation data for the article "On the Effect of the Large Magellanic Cloud on the Orbital Poles of Milky Way Satellite Galaxies"

description: This archive contains the data shared in the context of the "On the Effect of the Large Magellanic Cloud on the Orbital Poles of Milky Way Satellite Galaxies" article. In particular, it contains the initial conditions and final snapshots of our N-body simulation.
DOI: 10.17632/zs7n4t57k4.2
title: popupStructure_3AnalogModels_MagneticFabricDistr

description: AMS (anisotropy of magnetic susceptibility) dataset of three analogue models simulating a development of a pop-up structure in a fold-and-thrust belt (one xls-file with three sheets). For each sample, the location within the model is given (x,y, in local coordinate system). The dataset is divided into categories ("structure"), which are associated with the location and relation to a structure within the model, i.e., samples taken from the backthrusts ("bt"), forethrusts ("ft/kink"), forekink zones ("FKZ"), intersection of thrusts ("intersection"), or from areas away from thrusts and kinkzones ( >0.8 cm) (footwall beneath main backthrust next to backstop = "backstop" area; pop-up imbricate = "interlimb" zone; footwall in the model foreland = "foreland"; Model C: single samples from different parts in front of the pop-up structures and away from thrust/kinkzone are summarized as "compacted area"). For further information and illustration as well as numbering for certain labels, I refer to the following publication: 'Magnetic Fabric Signature within a Thrust Imbricate; an analogue modelling approach' by Schöfisch, T. et al. (in prep.)
DOI: 10.17632/fkd6c4mdtw.1
title: CHER Soils Data

description: Soils data compiled by the Coastal Hydraulics Engineering Resilience (CHER) Lab of the Department of Civil and Environmental Engineering at the University of Hawaii at Manoa.
DOI: 10.17632/dv2vm47sbm.4
title: Data on immunogenicity and reactogenicity to COVID-19 vaccination among patients receiving maintenance dialysis

description: The data file shared in the repository contains the raw data on the humoral and cellular immunogenicity and reactogenicity of a homologous mRNA-based and vector-based SARS-CoV-2 vaccine regimen in 60 patients receiving maintenance dialysis (six with a history of COVID-19). Data include information on demographics, comorbidities, dialysis modality and vintage, baseline clinical data, and vaccine regimen. The data file also includes data on the SARS-CoV-2-specific interleukin-2 (IL-2) reactivity and interferon-γ (IFN-γ) reactivity at 4 weeks and 6 weeks following a single dose or a complete homologous dual dose SARS-CoV-2 vaccine regimen, and on the self-reported local and systemic adverse events after the first and second dose using a standardized questionnaire.
DOI: 10.17632/t76nm3yfzh.2
title: Multi-omic phenotyping reveals host-microbe responses to bariatric surgery, glycaemic control and obesity

description: Resolution of type-2 diabetes (T2D) is common following bariatric surgery, particularly Roux-en-Y gastric bypass (RYGB). However, the underlying mechanisms have not been fully elucidated. To address this we compared the integrated serum, urine and faecal metabolic profiles of obese participants with and without T2D (n=81, T2D=42) with participants who underwent RYGB or sleeve gastrectomy (pre and 3-months post-surgery; n=27), taking diet into account. We co-modelled these data with shotgun metagenomic profiles of the gut microbiota to provide a comprehensive atlas of host-gut microbe responses to bariatric surgery, weight-loss and glycaemic control at the systems level. Bariatric surgery reversed a number of disrupted pathways characteristic of T2D. The differential metabolite set representative of bariatric surgery overlapped with both diabetes (19.3% commonality) and BMI (18.6% commonality). However, the percentage overlap between diabetes and BMI was minimal (4.0% commonality), consistent with weight-independent mechanisms of T2D resolution. The gut microbiota was more strongly correlated to BMI than T2D, although we identified some pathways such as amino acid metabolism that correlated with changes to the gut microbiota and which influence glycaemic control. Improved understanding of GM-host co-metabolism may lead to novel therapies for weight-loss or diabetes.
DOI: 10.17632/vbc4mh5btv.1
title: Taranaki plagioclase geochemical data

description: Electron microprobe data for Shane et al paper on Taranaki plagioclase
DOI: 10.17632/kyxftcm284.1
title: Ponnath, Ryan, Fang, Farris PLOS ONE 2022 Tungara whine sensitivity

description: Data are those presented in Ponnath et al. 2022 PLOS ONE. Each file supports a figure in the paper.
DOI: 10.17632/j3mkwhzh84.1
title: Enterobacterales Plasmids

description: Characterization of β-lactamases and multidrug resistance mechanisms in Enterobacterales from hospital effluents and wastewater treatment plant
Plasmids of isolates of Escherichia coli, Klebsiella pneumoniae, Klebsiella oxytoca and Citrobacter spp.
DOI: 10.17632/d9j743xsw7.2
title: Drag-Roughness

description: Drag coefficients' numerical results of spherical particles, irregularly roughened in shape and size as per Weaire-Phelan and Orthogonal lattice structures, at Reynolds numbers 2, 4, 6, 8.  The particles’ roughness has been determined as per different definitions based on either the surfacial or volumetric characteristics of the particles, including the mean diameter concept. Results include total drag, skin friction drag and form drag.
DOI: 10.17632/r7wmkkt6vz.1
title: Hydraulic Jump on a Partially Vegetated Bed

description: The datasheet contains experimental data used to create all figures in the WRR paper.
DOI: 10.17632/k3pcdvdzj2.2
title: Software Quality Grades for MI Software

description: The data provides a summary of the state of the practice for Medical Imaging (MI) software (as of August 2021). The summary is based on grading a set of 29 MI products using a template of 103 questions based on 9 software qualities. The raw data obtained by measuring each software product and the template used to grade the software are found in the SoftwareGrading-MI.xlsx file.

We use the first section of the template to collect general information, such as the name, purpose, platform, programming language, publications about the software, the first release and the most recent change date, website, and source code repository of the product, etc. Information in this section helps us understand the projects better and may be helpful for further analysis, but it does not directly affect the grading scores.

We designed the following nine sections in the template for the nine software qualities. For each quality, we ask several questions and the typical answers are among the collection of "yes'', "no'', "n/a'', "unclear'', a number, a string, a date, a set of strings, etc. Each quality needs an overall score between 1 and 10 based on all the previous questions.

All the last three sections are about the empirical measurements. For some qualities, the empirical measurements also affect the score. We use tools to extract information from the source code repositories. For projects held on GitHub, we manually collect additional metrics, such as the stars of the GitHub repository, and the numbers of open and closed pull requests.
DOI: 10.17632/pwhs5xykws.1
title: LINF_270006800

description: proteasome alpha 7 subunit
Leishmania infantum (strain JPCM5)
DOI: 10.17632/mhmkbsgpdh.1
title: IVOCs observed in a coastal megacity

description: The measured data used for the study "Intermediate-volatility organic compounds observed in a coastal megacity: Importance of non-road source emissions"
DOI: 10.17632/wnc2f8tb7h.1
title: LINF_270006700

description: mitoribosomal protein mS33
Leishmania infantum (strain JPCM5)
DOI: 10.17632/9wk6wz2m34.1
title: LINF_270006500

description: SET12
Leishmania infantum (strain JPCM5)