cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7799111.v1
title: Supplemental Table S1

description: <strong>Supplemental Table 1. </strong>Dietary composition of the purified diets for the control, HFD, HFD+EPA, and HFD+DHA groups.
DOI: 10.6084/m9.figshare.7799066
title: Seismic traces recorded by station MZ11

description: Seismic traces in binary MiniSeed format recorded by station MZ11. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7799048
title: Seismic traces recorded by station MZ10

description: Seismic traces in binary MiniSeed format recorded by station MZ10. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7799063
title: ColPortal zoomify image examples

description: Images from hematoxylin eosin histological preparations corresponding to colorectal cancer tissues.
DOI: 10.6084/m9.figshare.7799066.v1
title: Seismic traces recorded by station MZ11

description: Seismic traces in binary MiniSeed format recorded by station MZ11. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7799123.v2
title: ColPortal_microbiome_RawData

description: Microbiome raw data<br>
DOI: 10.6084/m9.figshare.7799048.v1
title: Seismic traces recorded by station MZ10

description: Seismic traces in binary MiniSeed format recorded by station MZ10. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7799045
title: Seismic traces recorded by station MZ09

description: Seismic traces in binary MiniSeed format recorded by station MZ09. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7799123.v3
title: ColPortal_microbiome_RawData

description: Microbiome raw data<br>
DOI: 10.6084/m9.figshare.7799045.v1
title: Seismic traces recorded by station MZ09

description: Seismic traces in binary MiniSeed format recorded by station MZ09. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798895
title: Seismic traces recorded by station MZ08

description: Seismic traces in binary MiniSeed format recorded by station MZ08. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7798895.v1
title: Seismic traces recorded by station MZ08

description: Seismic traces in binary MiniSeed format recorded by station MZ08. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to November 17, 2016.
DOI: 10.6084/m9.figshare.7798811
title: data_DEMOS.xlsx

description: These data refer to the Article "Music training with Démos Program positively influences cognitive functions in children<br>from low socio-economic backgrounds" by Mylène Barbaroux, Eva Dittinger and Mireille Besson.<br>
DOI: 10.6084/m9.figshare.7798811.v1
title: data_DEMOS.xlsx

description: These data refer to the Article "Music training with Démos Program positively influences cognitive functions in children<br>from low socio-economic backgrounds" by Mylène Barbaroux, Eva Dittinger and Mireille Besson.<br>
DOI: 10.6084/m9.figshare.7798724
title: Seismic traces recorded by station MZ07

description: Seismic traces in binary MiniSeed format recorded by station MZ07. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798724.v1
title: Seismic traces recorded by station MZ07

description: Seismic traces in binary MiniSeed format recorded by station MZ07. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 20, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798646
title: Seismic traces recorded by station MZ06

description: Seismic traces in binary MiniSeed format recorded by station MZ06. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 28, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798646.v1
title: Seismic traces recorded by station MZ06

description: Seismic traces in binary MiniSeed format recorded by station MZ06. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 28, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798559
title: Seismic traces recorded by station MZ05

description: Seismic traces in binary MiniSeed format recorded by station MZ05. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 19, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798559.v1
title: Seismic traces recorded by station MZ05

description: Seismic traces in binary MiniSeed format recorded by station MZ05. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 19, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798517
title: Gabryschetal_Change_of_mental_Health_during_Imprisonment2018.sav

description: Minimalized data set of the study Gabrysch et al. - Mental health and mental health symptoms during imprisonment - a three-year follow-up study <br>
DOI: 10.6084/m9.figshare.7798502
title: Magnetic field influence on asphaltene aggregation monitored by diffusion NMR spectroscopy: Is aggregation reversible at high magnetic fields?

description: We have shown that asphaltene self-association induces temperature gradients and convection currents and it is necessary to suppress these effects to obtain accurate data by DOSY NMR techniques. An interesting finding of this investigation is that aggregation process has been found to be affected by the magnetic field. The obtained results have shown for the first time a significant increase in diffusion coefficients of aggregates upon the increase in the magnetic field strength indicating higher molecular mobility of the present species and possible degradation of aggregates. We have shown that changes in diffusion coefficients are not a consequence of relaxation or viscosity effects. It is not yet clear what the reason for such behavior is and whether this effect is intrinsic. Traces of paramagnetic metals present in asphaltene samples may play a role in this process but this hypothesis is yet to be explored. Furthermore, this study has revealed a similar concentration range in which the Middle East crude oil asphaltenes aggregate being in agreement with previous results. Aggregates form different molecular weight species with different composition and number of monomer units. Ongoing experiments will throw more light on the magnetic field dependent asphaltene aggregation. This may have an impact on developing strategies for resolving asphaltene precipitation issues.
DOI: 10.6084/m9.figshare.7798493
title: Seismic traces recorded by station MZ04

description: Seismic traces in binary MiniSeed format recorded by station MZ04. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Velocimetric data are available from September 19, 2016 to October 14, 2016, whereas the accelerometric data are available up to October 31, 2016.
DOI: 10.6084/m9.figshare.7798502.v1
title: Magnetic field influence on asphaltene aggregation monitored by diffusion NMR spectroscopy: Is aggregation reversible at high magnetic fields?

description: We have shown that asphaltene self-association induces temperature gradients and convection currents and it is necessary to suppress these effects to obtain accurate data by DOSY NMR techniques. An interesting finding of this investigation is that aggregation process has been found to be affected by the magnetic field. The obtained results have shown for the first time a significant increase in diffusion coefficients of aggregates upon the increase in the magnetic field strength indicating higher molecular mobility of the present species and possible degradation of aggregates. We have shown that changes in diffusion coefficients are not a consequence of relaxation or viscosity effects. It is not yet clear what the reason for such behavior is and whether this effect is intrinsic. Traces of paramagnetic metals present in asphaltene samples may play a role in this process but this hypothesis is yet to be explored. Furthermore, this study has revealed a similar concentration range in which the Middle East crude oil asphaltenes aggregate being in agreement with previous results. Aggregates form different molecular weight species with different composition and number of monomer units. Ongoing experiments will throw more light on the magnetic field dependent asphaltene aggregation. This may have an impact on developing strategies for resolving asphaltene precipitation issues.
DOI: 10.6084/m9.figshare.7798493.v1
title: Seismic traces recorded by station MZ04

description: Seismic traces in binary MiniSeed format recorded by station MZ04. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Velocimetric data are available from September 19, 2016 to October 14, 2016, whereas the accelerometric data are available up to October 31, 2016.
DOI: 10.25376/hra.7798454
title: Korean Red Ginseng Pretreatment Protects Against Long-Term Sensorimotor Deficits After Ischemic Stroke Likely Through Nrf2

description: Endogenous neuroprotective mechanisms by which the brain protects itself against noxious stimuli and recovers from ischemic damage are key targets of stroke research, ultimately facilitating functional recovery. Transcriptional factor Nrf2, enriched in astrocytes, is a master regulator of endogenous defense systems against oxidative stress and inflammation. Korean Red Ginseng (Ginseng), one most widely used herbal medicine, has exhibited promising potentials in neuroprotection. Our study aimed to determine whether the standardized Ginseng extract pretreatment could attenuate acute sensorimotor deficits and improve long-term functional recovery after ischemic stroke though Nrf2 pathway and whether reactive astrogliosis is associated with such effect. Adult Nrf2−/− and matched wildtype control (WT) mice were pretreated with Ginseng orally for 7 days prior to permanent distal middle cerebral artery occlusion (pdMCAO). Using an optimized method that can accurately assess either severe or mild pdMCAO-induced sensorimotor deficits, neurobehavioral tests were performed over 28 days. The progression of lesion volume and the evolution of astrocytic and microglial activation were determined in the acute stage of ischemic stroke after pdMCAO (0–3 days). Nrf2-downstream target antioxidant genes expression levels was assessed by Western blot. We found that Ginseng pretreatment ameliorated acute sensorimotor deficits and promoted long-term functional recovery, prevented the acute enlargement of lesion volume (36.37 ± 7.45% on day 3), attenuated reactive astroglial progression but not microglia activation, and enhanced the induction of Nrf2-downstream target proteins after ischemic insult in WT mice, an effect which was lost in Nrf2 knockouts. The spatiotemporal pattern of reactive astrogliosis evaluation correlated well with acute ischemic damage progression in an Nrf2-dependent fashion during the acute phase of ischemia. In contrast, Nrf2 deficiency mice exhibited exacerbated ischemic condition compared to WT controls. Together, Ginseng pretreatment protects against acute sensorimotor deficits and promotes its long-term recovery after pdMCAO, at least partly, through Nrf2 activation, highlighting the potential efficacy of oral consumption of Ginseng for stroke preventative intervention in patients who are at great risk of recurrent stroke or transient ischemic attack. The attenuated reactive astrogliosis contributes to the Nrf2 pathway related neuroprotection against acute ischemic outcome and substantially long-term sensorimotor deficits in the context of ischemic stroke under pdMCAO.
DOI: 10.6084/m9.figshare.7798451
title: Hybrid human mouse genome files

description: Files required for mapping to combined human-mouse (hg19-mm10) genome
DOI: 10.25376/hra.7798454.v1
title: Korean Red Ginseng Pretreatment Protects Against Long-Term Sensorimotor Deficits After Ischemic Stroke Likely Through Nrf2

description: Endogenous neuroprotective mechanisms by which the brain protects itself against noxious stimuli and recovers from ischemic damage are key targets of stroke research, ultimately facilitating functional recovery. Transcriptional factor Nrf2, enriched in astrocytes, is a master regulator of endogenous defense systems against oxidative stress and inflammation. Korean Red Ginseng (Ginseng), one most widely used herbal medicine, has exhibited promising potentials in neuroprotection. Our study aimed to determine whether the standardized Ginseng extract pretreatment could attenuate acute sensorimotor deficits and improve long-term functional recovery after ischemic stroke though Nrf2 pathway and whether reactive astrogliosis is associated with such effect. Adult Nrf2−/− and matched wildtype control (WT) mice were pretreated with Ginseng orally for 7 days prior to permanent distal middle cerebral artery occlusion (pdMCAO). Using an optimized method that can accurately assess either severe or mild pdMCAO-induced sensorimotor deficits, neurobehavioral tests were performed over 28 days. The progression of lesion volume and the evolution of astrocytic and microglial activation were determined in the acute stage of ischemic stroke after pdMCAO (0–3 days). Nrf2-downstream target antioxidant genes expression levels was assessed by Western blot. We found that Ginseng pretreatment ameliorated acute sensorimotor deficits and promoted long-term functional recovery, prevented the acute enlargement of lesion volume (36.37 ± 7.45% on day 3), attenuated reactive astroglial progression but not microglia activation, and enhanced the induction of Nrf2-downstream target proteins after ischemic insult in WT mice, an effect which was lost in Nrf2 knockouts. The spatiotemporal pattern of reactive astrogliosis evaluation correlated well with acute ischemic damage progression in an Nrf2-dependent fashion during the acute phase of ischemia. In contrast, Nrf2 deficiency mice exhibited exacerbated ischemic condition compared to WT controls. Together, Ginseng pretreatment protects against acute sensorimotor deficits and promotes its long-term recovery after pdMCAO, at least partly, through Nrf2 activation, highlighting the potential efficacy of oral consumption of Ginseng for stroke preventative intervention in patients who are at great risk of recurrent stroke or transient ischemic attack. The attenuated reactive astrogliosis contributes to the Nrf2 pathway related neuroprotection against acute ischemic outcome and substantially long-term sensorimotor deficits in the context of ischemic stroke under pdMCAO.
DOI: 10.25376/hra.7798445
title: Archer, Patten, Coombes - 2017 - Free-water and free-water corrected fractional anisotropy in primary and premotor corticospinal tracts.pdf

description: Measures from diffusion MRI have been used to characterize the corticospinal tract in<br>chronic stroke. However, diffusivity can be influenced by partial volume effects from free-water,<br>region of interest placement, and lesion masking. We collected diffusion MRI from a cohort of chronic<br>stroke patients and controls and used a bitensor model to calculate free-water corrected fractional<br>anisotropy (FAT) and free water (FW) in the primary motor corticospinal tract (M1-CST) and the dorsal<br>premotor corticospinal tract (PMd-CST). Region of interest analyses and whole-tract slice-by-slice analyses<br>were used to assess between-group differences in FAT and FW in each tract. Correlations between<br>FAT and FW and grip strength were also examined. Following lesion masking and correction for multiple<br>comparisons, relative increases in FW were found for the stroke group in large portions of the M1-<br>CST and PMd-CST in the lesioned hemisphere. FW in cortical regions was the strongest predictor of<br>grip strength in the stroke group. Our findings also demonstrated that FAT is sensitive to the direct<br>effects of the lesion itself, thus after controlling for the lesion, differences in FAT in nonlesioned tissue<br>were small and generally similar between hemispheres and groups. Our observations suggest that FW<br>may be a robust biological measurement that can be used to assess microstructure in residual white<br>matter after stroke.
DOI: 10.25376/hra.7798442
title: Archer et al. - 2016 - Microstructural Properties of Premotor Pathways Predict Visuomotor Performance in Chronic Stroke - Unknown.pdf

description: Microstructural properties of the corticospinal tract (CST) descending from the motor cortex predict<br>strength and motor skill in the chronic phase after stroke. Much less is known about the relation<br>between brain microstructure and visuomotor processing after stroke. In this study, individual’s<br>poststroke and age-matched controls performed a unimanual force task separately with each hand at three<br>levels of visual gain. We collected diffusion MRI data and used probabilistic tractography algorithms to<br>identify the primary and premotor CSTs. Fractional anisotropy (FA) within each tract was used to predict<br>changes in force variability across different levels of visual gain. Our observations revealed that individuals<br>poststroke reduced force variability with an increase in visual gain, performed the force task with<br>greater variability as compared with controls across all gain levels, and had lower FA in the primary<br>motor and premotor CSTs. Our results also demonstrated that the CST descending from the premotor cortex,<br>rather than the primary motor cortex, best predicted force variability. Together, these findings demonstrate<br>that the microstructural properties of the premotor CST predict visual gain-related changes in force<br>variability in individuals poststroke
DOI: 10.25376/hra.7798445.v1
title: Archer, Patten, Coombes - 2017 - Free-water and free-water corrected fractional anisotropy in primary and premotor corticospinal tracts.pdf

description: Measures from diffusion MRI have been used to characterize the corticospinal tract in<br>chronic stroke. However, diffusivity can be influenced by partial volume effects from free-water,<br>region of interest placement, and lesion masking. We collected diffusion MRI from a cohort of chronic<br>stroke patients and controls and used a bitensor model to calculate free-water corrected fractional<br>anisotropy (FAT) and free water (FW) in the primary motor corticospinal tract (M1-CST) and the dorsal<br>premotor corticospinal tract (PMd-CST). Region of interest analyses and whole-tract slice-by-slice analyses<br>were used to assess between-group differences in FAT and FW in each tract. Correlations between<br>FAT and FW and grip strength were also examined. Following lesion masking and correction for multiple<br>comparisons, relative increases in FW were found for the stroke group in large portions of the M1-<br>CST and PMd-CST in the lesioned hemisphere. FW in cortical regions was the strongest predictor of<br>grip strength in the stroke group. Our findings also demonstrated that FAT is sensitive to the direct<br>effects of the lesion itself, thus after controlling for the lesion, differences in FAT in nonlesioned tissue<br>were small and generally similar between hemispheres and groups. Our observations suggest that FW<br>may be a robust biological measurement that can be used to assess microstructure in residual white<br>matter after stroke.
DOI: 10.25376/hra.7798442.v1
title: Archer et al. - 2016 - Microstructural Properties of Premotor Pathways Predict Visuomotor Performance in Chronic Stroke - Unknown.pdf

description: Microstructural properties of the corticospinal tract (CST) descending from the motor cortex predict<br>strength and motor skill in the chronic phase after stroke. Much less is known about the relation<br>between brain microstructure and visuomotor processing after stroke. In this study, individual’s<br>poststroke and age-matched controls performed a unimanual force task separately with each hand at three<br>levels of visual gain. We collected diffusion MRI data and used probabilistic tractography algorithms to<br>identify the primary and premotor CSTs. Fractional anisotropy (FA) within each tract was used to predict<br>changes in force variability across different levels of visual gain. Our observations revealed that individuals<br>poststroke reduced force variability with an increase in visual gain, performed the force task with<br>greater variability as compared with controls across all gain levels, and had lower FA in the primary<br>motor and premotor CSTs. Our results also demonstrated that the CST descending from the premotor cortex,<br>rather than the primary motor cortex, best predicted force variability. Together, these findings demonstrate<br>that the microstructural properties of the premotor CST predict visual gain-related changes in force<br>variability in individuals poststroke
DOI: 10.6084/m9.figshare.7798385
title: Seismic traces recorded by station MZ03

description: Seismic traces in binary MiniSeed format recorded by station MZ03. The daily records are separated in folders representing the channels: EHE.D, EHN.D, EHZ.D for the velocimetric data and HNE.D, HNN.D and HNZ.D for the accelerometric data. Both velocimetric and accelerometric data are available from September 19, 2016 to October 26, 2016.
DOI: 10.6084/m9.figshare.7798451.v1
title: Hybrid human mouse genome files

description: Files required for mapping to combined human-mouse (hg19-mm10) genome