cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5483974.v1
title: Need For Sleep - Replication package

description: Replication package for "<i>Need for Sleep: the Impact of a Night of Sleep Deprivation on Developers' Performance"</i><br>Please, see README file for more information.
DOI: 10.6084/m9.figshare.22177382.v1
title: Datafiles for paper Density stratification and buoyancy evolution in pyroclastic density currents

description: This dataset includes data collected during laboratory experiments and complementary numerical simulations. Data from the laboratory experiments includes Excel file with particle concentration and particle size distribution data as collected by gravity fed siphons, as well MATLAB files containing raw velocity and associated timeseries data collected by Profiling Acoustic Doppler Velocimeters and Acoustic Doppler Profilers. Data from the simulations includes MATLAB files containing raw velocity, particle concentration, and fluid density data.
DOI: 10.6084/m9.figshare.6276179.v1
title: XRD Allende and NWA6966 Bruker EVA and .cif

description: This files contains the raw XRD files for Bruker EVA. Additionally contained are.cif files for possible XRD patterns for Rietveld-analysis, also Bruker. Unfortunately, no export to a common file type was possible.
DOI: 10.6084/m9.figshare.26174338.v3
title: DTA3 Impact & Evaluation Report

description: This is a mixed methods dataset following online exit surveys and focus groups with MSCA doctoral fellows, partner stakeholders, and fellow supervisors. Participants were asked about their experiences of the Marie Curie Doctoral fellowship, including completing a PhD during COVID-19 and their experiences of being international students.
DOI: 10.6084/m9.figshare.12204695
title: Supplementary Material for: Macrophages and Fibroblasts Differentially Contribute to Tattoo Stability

description: <b><i>Background:</i></b> Little information is available about the complexity and function of skin cells contributing to the high stability of tattoos. It has been shown that dermal macrophages play an important role in the storage and maintenance of pigment particles. By contrast, the impact of dermal fibroblasts, forming the connective tissue of the skin, on the stability of the tattoo is not known. <b><i>Method:</i></b> In this study, we compared the cell number and the particle load in dermal macrophages versus dermal fibroblasts, isolated from tail skin of tattooed mice. <b><i>Results:</i></b> Microscopic analysis revealed that both cell populations contained the tattoo particles, although in largely different amounts. A small number of macrophages with high side scatter intensity contained a large quantity of pigment particles, whereas a high number of dermal fibroblasts harbored only a few pigment particles. Using the CD64<sup>dtr</sup> mouse model that allows for selective, diphtheria toxin-mediated depletion of macrophages, we have previously shown that macrophages hold the tattoo in place by capture-release and recapture cycles. In the tattooed skin of macrophage-depleted mice, the content of pigment particles in fibroblasts did not change; however, the total number of fibroblasts carrying particles increased. <b><i>Conclusion:</i></b> The present study demonstrates that dermal macrophages and fibroblasts contribute in different ways to the tattoo stability and further improves our knowledge on tattoo persistence.
DOI: 10.6084/m9.figshare.28848356.v2
title: Switch-like gene expression modulates disease risk

description: Supplementary Data from the manuscript "Switch-like gene expression modulates disease risk."<br>Nature Communications 2025.
DOI: 10.17632/9p699wf54f
title: Computer program Neutron_CR-39 for simulation of neutrons from an Am–Be source and calculation of proton track profiles

description: Abstract A computer program called Neutron_CR-39.F90 for neutron simulation through a PADC detector and its detection was described and developed. In this work the neutron Am–Be source was considered for simulation. It was shown that the most intensive secondary particles, created in neutron interactions with the detector, are protons. The programming steps are outlined with detailed description of neutron simulation, determination of latent tracks of created protons, as well as, their development aft... Title of program: Neutron_CR-39 Catalogue Id: AEIU_v1_0 Nature of problem The neutrons do not cause ionizations in the detector, and consequently no tracks are produced directly by them in the PADC. Due to the elastic and nonelastic interaction of neutrons with the atoms of PADC, recoil nuclei and secondary particles are created producing latent intrinsic tracks. After chemical etching in aqueous NaOH solution these tracks become visible under optical microscope and usually density of visible tracks is measured. Optical microscopes are often used for this purpose but ... Versions of this program held in the CPC repository in Mendeley Data AEIU_v1_0; Neutron_CR-39; 10.1016/j.cpc.2011.03.024 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/yd7n6xygvb
title: Core genome MLST scheme for the Bacillus cereus group

description: This entry contains raw data sets from chewBBACA and Panaroo, used to create and validate a core genome MLST scheme for the Bacillus cereus group of bacteria.
1. Creation of a cgMLST scheme from 173 closed B. cereus group genomes using chewBBACA (file S1). The latest assemblies of 2458 Bacillus cereus group genomes available (October, 2021) were downloaded from the NCBI GenBank FTP site, of which 173 were complete (i.e., ungapped, fully closed chromosome and plasmid sequences) genomes. A cgMLST scheme was defined using the chewBBACA 2.8.5 pipeline on the closed genome set.
2. Core genome from 173 closed Bacillus cereus group genomes using Panaroo (file S2). For comparison we analyzed the core genome using the most recent pan-genome software, Panaroo.
3. Application of the cgMLST scheme (from 1) to 2458 B. cereus group genomes (file S3). The cgMLST scheme created from 173 closed B. cereus group genomes using chewBBACA (1) was applied to the full set of 2458 B. cereus group genomes available. Allelic profiles for the loci in the scheme were determined using the "AlleleCall" operation in chewBBACA.
DOI: 10.6084/m9.figshare.1197158.v1
title: Thorlabs_uc480

description: This software package of thorlabs uc480 is made available for your convenience, since our AFS tracking software uses the vi's and drivers from here.
DOI: 10.6084/m9.figshare.24578932.v2
title: Processed_data

description: Preocessed data for main figures in the manuscript
DOI: 10.6084/m9.figshare.17303936.v1
title: Supplemental Table T1

description: <b>Supplemental Table T1. </b>Top: measurement of membrane potential at steady state in models with different amounts of I<sub>h</sub> (g<sub>h</sub> was varied). Bottom: calculation of changes to leak conductance to mimic the effects of conductance increase by I<sub>h</sub>.
DOI: 10.6084/m9.figshare.28232717.v1
title: Data

description: Data used for Data for the project titled <i>"Brain-like Border Ownership Signals Support Prediction of Natural Videos" (</i>DOI: 10.1101/2024.08.11.607040).
DOI: 10.6084/m9.figshare.17197748.v3
title: HadAM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.21507561.v1
title: Summary table with information about the experiment

description: Excel sheet with information about EEG/EMG quality, recording dates, and animal specifications
DOI: 10.6084/m9.figshare.12902474.v1
title: Supplementary Files for "De novo assembly of the Brown trout (Salmo trutta m. fario) brain and muscle transcriptome: transcript annotation, tissue differential expression profile and SNP discovery"

description: This data set contains two document files:Supplementary file1:Methodology descriptionSupplementary file2:Descriptive statistics of assembly and sequencing
DOI: 10.6084/m9.figshare.23606685.v2
title: ALIGNN for OCP

description: ALIGNN models for open catalyst project dataset https://pages.nist.gov/jarvis_leaderboard/ https://arxiv.org/abs/2306.11688
DOI: 10.6084/m9.figshare.24709254.v2
title: Shared data for Atmosphere

description: These are netCDF4 files from WRF model output, which include the following data from three experiments: <b>CTL</b>, <b>noHEAT</b> and <b>noMOUNTAIN</b>. The data are: orography for CTL (orography_ctl.nc) and noMOUNTAIN (orography_noMOUNTAIN.nc), sensible heat flux for CTL (hfx_ctl.nc), model height (z_ctl.nc, z_noHEAT.nc and z_noMOUNTAIN.nc), 2-meter air temperature (t2m_ctl, t2m_noHEAT and t2m_noMOUNTAIN), and three-dimensional wind field and potential temperature (circulation_ctl.nc, circulation_noHEAT.nc and circulation_noMOUNTAIN.nc).
DOI: 10.6084/m9.figshare.25034468.v1
title: <b>Data for the articial entitled "</b><b>TYPHOON DISASTER EMERGENCY FORECASTING METHOD BASED ON BIG DATA</b><b>"</b>

description: This is the data titled "<b>TYPHOON DISASTER EMERGENCY FORECASTING METHOD BASED ON BIG DATA</b>" in the paper.
DOI: 10.6084/m9.figshare.28689962.v1
title: Supplementary Material for: The clinical efficacy evaluation of the KHA-200 hemoperfusion device in the treatment of end-stage renal disease patients undergoing blood purification therapy

description: Objective: To assess the impact of employing the KHA-200 hemoperfusion device in conjunction with hemodialysis therapy in the elimination of serum solutes among maintenance hemodialysis patients. 
Methods: A total of ninety-two maintenance hemodialysis (MHD) patients from our hospital's hemodialysis center were judiciously chosen and allocated randomly into two groups: the conventional hemodialysis group, serving as the control group, and the group utilizing the KHA-200 hemoperfusion device in combination with hemodialysis, denoted as the experimental group, in a 1:1 ratio. We compared variations in serum solute indices, including blood urea nitrogen, creatinine, potassium, calcium, phosphorus, high-sensitivity C-reactive protein (hs-CRP), interleukin-6 (IL-6), β2-microglobulin (β2-MG), parathyroid hormone (PTH), homocysteine (Hcy),albumin,both prior to and post-treatment.Meanwhile, the comparison of the serum solute clearance rates in the two groups was performed.
Results: Following treatment, both groups exhibited substantial reductions in blood urea nitrogen, creatinine, uric acid, potassium, phosphorus, PTH, and Hcy (p &lt; 0.001). There were no statistically significant distinctions between the two groups in terms of urea nitrogen, creatinine, uric acid, and potassium clearance (p &gt; 0.05). Conversely, the experimental group demonstrated a significant effect on the elimination of IL-6 and β2-MG (p &lt; 0.001). Furthermore, the experimental group's performance in reducing blood phosphorus, PTH, IL-6, β2-MG and Hcy was significantly superior to that of the control group (p &lt; 0.05). Moreover, the reduction in systolic blood pressure in the experimental group was better than in the control group.
Conclusion: Employing the KHA-200 hemoperfusion device in tandem with hemodialysis excels in removing blood phosphorus and certain medium-sized uremic toxins, including PTH, IL-6,β2-MG and Hcy surpassing the performance of conventional hemodialysis.
DOI: 10.6084/m9.figshare.16685350.v1
title: Scenario 1. No PD

description: HV industrial environment
DOI: 10.6084/m9.figshare.17019167.v1
title: Table 4: NCS Anti Sensory Summary (Follow-up Visit)

description: The repeat NCS/EMG showed persistent abnormalities in both upper and lower extremities, but with significant improvement. <br>
DOI: 10.6084/m9.figshare.21774722.v1
title: LncRNA-SNHG1 promotes paclitaxel resistance of gastric cancer cells through modulating the miR-216b-5p-hexokianse 2 axis

description: Gastric cancer (GC) is one of the most malignant tumors with high incidence and poor prognosis. Currently, the combination of surgery with chemo- or radiotherapy is widely applied therapeutic strategy against GC. However, development of drug resistance severely limited the clinical application of chemotherapy. Small nucleolar RNA host gene 1 (SNHG1) has been reported to be frequently overexpressed in diverse human tumors. Yet, the biological roles and mechanisms of SNHG1 in chemoresistant GC remain unclear. Expressions of lncRNA and miRNA were detected by qRT-PCR. Responses of GC cells to Taxol treatments were evaluated by cell viability assay and apoptosis assay. Glucose metabolism rate was examined by glucose uptake and extracellular acidification rate (ECAR). The lncRNA–miRNA interaction was validated by RNA pull-down assay and luciferase assays. This study reports that expressions of SNHG1 were significantly elevated in patients with GC and gastric cancer cell lines. Silencing SNHG1 effectively suppressed GC cells migration and increased the Taxol sensitivity of GC cells. Moreover, we detected remarkedly upregulated SNHG1 expression and increased glucose metabolism in Taxol resistant cell line, MKN-45 TXR. Low glucose supply rendered Taxol resistant cells more susceptible to Taxol treatment compared with that from MKN-45 parental cells. Bioinformatical analysis, RNA pull-down and luciferase assays verified that SNHG1 functioned as a ceRNA of miR-216b-5p in GC cells. Consistently, we detected miR-216b-5p was significantly downregulated in GC tumor specimens and Taxol resistant GC cells. The hexokinase 2 (<i>HK2</i>), a glucose metabolism key enzyme, was predicted and validated as a direct target of miR-216b-5p in GC cells. Finally, restoration of miR-216b-5p in SNHG1-overexpressing MKN-45 TXR cells successfully overrode the SNHG1-promoted Taxol resistance through targeting the <i>HK2-</i>glycolysis axis. This study uncovered new biological roles and molecular mechanisms of the lncRNA-SNHG1-mediated Taxol resistance of gastric cancer, suggesting targeting the SNHG1-miR-216b-5p-<i>HK2</i> axis could be a potentially therapeutic approach against chemoresistant gastric cancer.
DOI: 10.6084/m9.figshare.14001149.v2
title: Global Survey of Electron Precipitation due to Hiss Waves in the Earth’s Plasmasphere and Plumes

description: This is the dataset for the paper 'Global Survey of Electron Precipitation due to Hiss Waves in the Earth’s Plasmasphere and Plumes', which is submitted to Geophysical Research Letters.
DOI: 10.6084/m9.figshare.28466408.v1
title: Metallothionein (MT) expression in eastern mosquitofish (<i>Gambusia holbrooki</i>) exposed to <sup>137</sup>Cs and lead

description: Dataset for "Metallothionein (MT) expression in eastern mosquitofish (<i>Gambusia holbrooki</i>) exposed to <sup>137</sup>Cs and lead: implications for using MT as a metal exposure biomarker"
DOI: 10.6084/m9.figshare.20430336.v1
title: EEG raw data and Experiment procedure example

description: Participant's EEG data were collected in the EEG experiment.
DOI: 10.17632/4g4k3xrb3h
title: Data for: Neuroprotective effect of dichloromethane extraction from Piper nigrum L. and Piper longum L. on permanent focal cerebral ischemia injury in rats

description: Neurological deficits of each rat were determined postural reflex, body sway, balance beam, and grip strength test and the degree of cerebral tissue injury was detected by TTC. Related protein expression were detected by Western blot.
DOI: 10.6084/m9.figshare.27211968.v1
title: high-resolution figures.zip

description: High resolution versions of the images of the paper.
DOI: 10.6084/m9.figshare.17075375.v2
title: scAgeComShiny data

description: R rda file that contains processed data to be used with the Shiny app scAgeComShiny.
DOI: 10.6084/m9.figshare.6287759.v1
title: Mass spectrometric data from a preliminary processing try

description: These are the results of a first preliminary bioinformatic processing of mass spectrometric data from peptide extracts of three acoel species. These results belong to the project "Thiel, Daniel; Hejnol, Andreas (2018): Supporting Material: Neuropeptides in Xenacoelomorpha. figshare. Collection."
DOI: 10.6084/m9.figshare.28741931.v1
title: Shape Analyses

description: Attached are the Fourier descriptors for shape generated from beak maxilla outlines in profile and dorsal view. The attached R code is for generating the principal components of profile and dorsal shape used in phenotype association analyses as well as for figure generation.
DOI: 10.17632/s7xhdjdtjv
title: Stock market trading via actor critic reinforcement learning and adaptable data structure

description: Stock market trading via actor critic reinforcement learning and adaptable data structure
 Reinforcement learning in Matlab code and Euro, Gold, and Oil Data.
Data: https://finance.yahoo.com/
DOI: 10.6084/m9.figshare.2062002.v3
title: txtlab Multilingual Novels

description: This directory contains 450 novels that appeared between 1770 and 1930 in German, French and English. It is designed for us in teaching and research.
DOI: 10.6084/m9.figshare.783900.v1
title: Absolute Pitch Test

description: Absolute Pitch test online experiment - html currently hosted at www.musicianbrain.com/aptest
DOI: 10.17632/4z6zbpcgxx
title: Untargeted and targeted metabolomics

description: Integrated untargeted and targeted metabolomics to reveal the mechanisms of herbal medicine HLXLD on Alzheimer's disease , Supplementary Information
DOI: 10.6084/m9.figshare.7508012.v1
title: Phylogenomic and single nucleotide polymorphism analyses revealed the hybrid origin of Spondias bahiensis (family Anacardiaceae): de novo genome sequencing and comparative genomics

description: Abstract The genus Spondias (family Anacardiaceae) comprises 19 taxa, ten of which occur in Neotropical regions. Spondias bahiensis has been suggested to be a hybrid, although initial evidence does not support this hypothesis. The aim of this study was to test the hypothesis of the hybrid origin of S. bahiensis using high-throughput sequencing with single nucleotide polymorphism (SNP) analysis, characterization of intragenomic nuclear ribosomal DNA (nrDNA), and nuclear and chloroplast phylogenomic analyses. The SNP analysis revealed a high number of SNPs in the S. bahiensis genome, and with respect to nrDNA, S. bahiensis shared approximately half of the SNP alleles with S. tuberosa, but not with S. mombin. Combining the SNP analysis with nrDNA phylogeny confirmed the hybrid origin of S. bahiensis and put S. tuberosa as the female genitor. Considering the phylogeny of the genus Spondias and intraspecific SNPs in S. bahiensis, the putative male genitor is S. dulcis.
DOI: 10.6084/m9.figshare.19626690.v7
title: Supplementary Table 1

description: List of eligible studies, variables description, and statistical models
DOI: 10.6084/m9.figshare.21806667.v1
title: DR ATAC-seq

description: ATAC-seq raw datasets for C57BL6/J dorsal raphe nuclei
DOI: 10.6084/m9.figshare.28827272.v1
title: raw image

description: The data supporting the findings of this study are available at Figshare https://figshare.com/s/7d5876c37f576f00e478.ASFV early infection groups are numbered A2 and A3; late infection groups are numbered A4, A5 and A6. early Mock groups are numbered C2 and C3; late mock groups are numbered C4, C5 and C6. A-E denotes the first to the fifth rounds of Mip-seq fluorescence <i>in situ</i> hybridization, and the 1-4 numbers denote the replicates of the visual fields in each group. For example, A2-A-1 indicates the first visual field repeat of the first round of fluorescence <i>in situ</i> hybridization in the early infection group A2.
DOI: 10.17632/dmzrf779st
title: Observed Lichen Genera and measured Air Quality Parameters across four major cities in Nigeria

description: Data were gathered from field-recorded measurements. The following parameters were collected
I.	Coordinates of Observation
II.	Altitude
III.	Lichen Genus Identified
IV.	Ambient Concentration of  -	PM2.5, PM10, NO2, SO2 (microgram/cubic metre)
The following were computed variables from the field data
I.	Relative Air Quality Guidance Level for each air quality parameter
II.	Air Quality Index for each parameter
III.	Combined Air Quality Index  
The computed values were based on WHO Air Quality Guidelines (https://www.who.int/news-room/feature-stories/detail/what-are-the-who-air-quality-guidelines). Thus, 15, 45, 25 and 40 microgram/cubic metre were the standard levels for PM2.5, PM10, No2 and SO2 respectively. The data provides opportunities to train machine learning models to identify associations between lichen genera and air quality parameters. Thereby, supporting air quality monitoring in data-sparse regions.
DOI: 10.6084/m9.figshare.7466549.v1
title: Supplementary Material for: Daily Supplementation with 4000 IU Vitamin D3 for Three Years Does Not Modify Cardiovascular Risk Markers in Patients with Advanced Heart Failure: The Effect of Vitamin D on Mortality in Heart Failure Trial

description: <b><i>Background/Aims:</i></b> We aimed to investigate the effect of a moderately high vitamin D dose on lipid parameters and biochemical markers of vascular calcification (VC) in patients with established cardiovascular disease. <b><i>Methods:</i></b> We included in this pre-specified secondary analysis of a randomized controlled trial 161 patients with advanced heart failure and 25-hydroxyvitamin D (25OHD) concentrations &lt; 75 nmol/L (vitamin D group: <i>n</i> = 80; placebo group: <i>n</i> = 81), who received a daily vitamin D<sub>3</sub> supplement of 4,000 IU for 3 years. We assessed between-group differences of the lipid parameters total-cholesterol, high-density lipoprotein-cholesterol, low-density lipoprotein-cholesterol, and triglycerides, and the VC markers fetuin-A and non-phosphorylated undercarboxylated matrix gla protein (MGP) at study termination, with adjustment for baseline values. <b><i>Results:</i></b> Lipid parameters, the percentage of patients with dyslipoproteinemia, and VC markers did not differ significantly between groups at study termination (<i>p</i> values: 0.395–0.939). Likewise, vitamin D achieved no significant treatment effect on these markers in subgroup analyses in patients with 25OHD concentrations &lt; 30 nmol/L, nonusers of lipid-lowering drugs, or diabetic patients (<i>p</i> values: 0.245–0.998). <b><i>Conclusion:</i></b> Our data indicate that vitamin D does not improve the lipid profile and does not influence the calcification inhibitors fetuin-A and non-phosphorylated undercarboxylated MGP in patients with advanced heart failure.
DOI: 10.6084/m9.figshare.3554997.v1
title: Appendix D. Binomial model: four figures presenting Isle of May results for overall productivity.

description: Binomial model: four figures presenting Isle of May results for overall productivity.