cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5245240
title: Multiple White and Flat Elevated Lesions Observed in the Stomach: A Prospective Study of Clinical Characteristics and Risk Factors.

description: This data was used for the following research.<br><br>Intern Med. 2018 Apr 27. doi: 10.2169/internalmedicine.9889-17. [Epub ahead of print]<br>Multiple White and Flat Elevated Lesions Observed in the Stomach: A Prospective Study of Clinical Characteristics and Risk Factors.<br>Majima K, Muraki Y, Shimamoto T.<br>AbstractObjective Multiple white and flat elevated lesions (MWFLs) observed in the stomach have only been presented in abstracts at academic conferences over the last decade; therefore, relatively little is known about these lesions. Our aim was to prospectively clarify the clinical characteristics of MWFLs, to identify their risk factors and to retrospectively evaluate the clinical progression of these lesions. Methods A prospective analysis of clinical characteristics and risk factors was conducted in participants who underwent esophagogastroduodenoscopic screening at our hospital. A retrospective analysis of the medical chart of patients identified as having MWFLs was conducted to describe the clinical progression of these lesions. Results The prevalence rate of MWFLs was 10.4% (80/767), with the following risk factors identified on a logistic regression analysis: use of proton pump inhibitors (odds ratio [OR], 3.51; 95% confidence interval [CI], 1.92-6.43), female sex (OR, 1.92; 95% CI, 1.19-3.12) and a 1-year increase in age (OR, 1.05; 95% CI, 1.02-1.08). Among the 70 cases with MWFLs observed over a mean duration of 2.3 years, no progression of MWFLs was detected in 67 cases (96%). Among the 3 remaining cases, progression was mild, with none of the lesions progressing to malignancy. Conclusion The use of PPIs, female sex, and age are risk factors for MWFLs. We believe that endoscopists should recognize these lesions.
DOI: 10.6084/m9.figshare.5245219
title: Campylobacter concisus strains from inflammatory bowel disease

description: <b>Molecular epidemiology and comparative genomics and typing of <i>Campylobacter concisus</i> strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease </b>
DOI: 10.6084/m9.figshare.5245219.v1
title: Campylobacter concisus strains from inflammatory bowel disease

description: <b>Molecular epidemiology and comparative genomics and typing of <i>Campylobacter concisus</i> strains from saliva, faeces and gut mucosal biopsies in inflammatory bowel disease </b>
DOI: 10.6084/m9.figshare.5245240.v1
title: Multiple white and flat elevated lesions observed in the stomach: A prospective study of clinical characteristics and risk factors

description: <sub>This data was used for analysis in ‘Multiple white and flat elevated lesions observed in the stomach: A prospective study of clinical characteristics and risk factors’.</sub>
DOI: 10.6084/m9.figshare.5245402.v9
title: App-study protocol - supplementary material for RCT

description: Supplementary material for the study protocol <br>"Can an App Supporting Psoriasis Patients Improve Adherence to Topical Treatment? A single-blind randomized controlled trial" <br>Additional file 1: Filled SPIRIT 2013 checklist and World Health Organization (WHO) Trial Registration Data Set. <br>Additional file 2: Danish version of advertisement material <br>Additional file 3: Licenses to use the copyright instruments Bluetooth, DLQI, and LS-PGA. Data collection forms for DLQI and LS-PGA <br>Additional file 4: Danish version of the informed consent form and the information statement for participants <br>Additional file 5: Danish version of information about the technical solutions, study medication, and diary provided to participants in intervention and non-intervention Group <br>Additional file 6: General information. Name and addresses of study site, affiliated laboratory, business partners, and public authorities providing assistance for the study <br>Additional file 7: Guidelines for publication <br>Additional file 8: Screening and reporting of adverse events (AEs) <br> <br><br>
DOI: 10.6084/m9.figshare.5245402.v8
title: App-study protocol - supplementary material for RCT

description: Supplementary material for the study protocol <br>"Can an App Supporting Psoriasis Patients Improve Adherence to Topical Treatment? A single-blind randomized controlled trial" <br>Additional file 1: Filled SPIRIT 2013 checklist and World Health Organization (WHO) Trial Registration Data Set. <br>Additional file 2: Danish version of advertisement material <br>Additional file 3: Licenses to use the copyright instruments Bluetooth, DLQI, and LS-PGA. Data collection forms for DLQI and LS-PGA <br>Additional file 4: Danish version of the informed consent form and the information statement for participants <br>Additional file 5: Danish version of information about the technical solutions, study medication, and diary provided to participants in intervention and non-intervention Group <br>Additional file 6: General information. Name and addresses of study site, affiliated laboratory, business partners, and public authorities providing assistance for the study <br>Additional file 7: Guidelines for publication <br>Additional file 8: Screening and reporting of adverse events (AEs) <br> <br><br>
DOI: 10.6084/m9.figshare.5245171
title: Supplementary Material for: Diagnostic Performance of Cerebroplacental Ratio Thresholds at Term for Prediction of Low Birthweight and Adverse Intrapartum and Neonatal Outcomes in a Term, Low-Risk Population

description: <b><i>Objectives:</i></b> To investigate the screening performance and best threshold centile (5th vs. 10th) of the cerebroplacental ratio (CPR) in low-risk, term pregnancies to predict low birthweight and adverse intrapartum and neonatal outcomes in a term, low-risk population. <b><i>Methods:</i></b> This was a blinded, prospective, cross-sectional study of low-risk singleton pregnancies at term. Women attended fortnightly from 36 weeks for CPR and estimated fetal weight assessment. Intrapartum and neonatal outcomes were recorded. Primary outcomes assessed were low birthweight, cesarean section for intrapartum fetal compromise, and composite adverse neonatal outcome. <b><i>Results:</i></b> A total of 483 women participated in the study. The CPR 10th centile (1.48) threshold resulted in the best screening performance. Sensitivities for low birthweight, cesarean section for intrapartum fetal compromise, and composite adverse neonatal outcome of 41.9, 61.1, and 38.3% were achieved for false-positive rates of 17.7, 17.7, and 15.2%, respectively. The corresponding areas under the receiver operating characteristic curves were 0.62, 0.72, and 0.62. <b><i>Conclusion:</i></b> The CPR 10th centile resulted in the best screening performance, although this would be considered fair at best. The CPR 10th centile may be useful as part of a risk stratification tool for prediction of low birthweight and adverse intrapartum and neonatal outcomes.
DOI: 10.6084/m9.figshare.5245078
title: Simulation for the Effects of Well Pressure and Initial Temperature on Methane Hydrate Dissociation

description: <b>1:</b> The equilibrium pressure corresponding to the current temperature.<b>2:</b> Model Verfication.<b>300minPw274</b>/<b>300minPw279</b>/<b>300minPw284</b>/<b>3000minPw274</b>/ <b>3000minPw279</b>/<b>3000minPw284</b>/<b>30000minPw274</b>/ <b>30000minPw279</b>/<b>30000minPw284: </b>Pressure distribution in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, and exploiting time of 300/3000/30000min.<b>300min5.0Pw</b>/<b>300min8.0Pw</b>/3<b>000min5.0Pw</b>/<b>3000min8.0Pw</b>/ <b>30000min5.0Pw</b>/<b>30000min8.0Pw: </b>Pressure distribution in reservoir under well pressure of 5MPa/8MPa and initial temperature of284K, exploiting time of 300/3000/30000min.<b>300min274T</b>/<b>300min279T</b>/<b>300min284T</b>/<b>3000min279T</b>/<b>3000min284T</b>/ <b>30000min279T</b>/<b>30000min284T: </b>Temperature distribution in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.<b>300min274K K</b>/<b>300min279K K</b>/<b>300min284K K</b>/<b>3000min274K K</b>/<b>3000min279K K</b>/<b>3000min284K K</b>/ <b>30000min274K K</b>/<b></b><b>30000min279K K</b>/<b>30000min284K K: </b> Permeability in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.<b>Qg300min3.0 274</b>/<b> </b><b>Qg300min3.0 279</b>/<b> </b><b>Qg300min3.0 284</b>/<b>Qg300min5.0 284</b>/<b> </b><b>Qg300min8.0 284</b>/<b> </b><b>Qg3000min3.0 274</b>/<b>Qg3000min3.0 279</b>/<b> </b><b>Qg3000min3.0 284</b>/<b> </b><b>Qg3000min 5.0 284</b>/<b> Qg3000min 8.0 284: </b>Cmulative gas produced under well pressure of 3MPa/5MPa/8MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.
DOI: 10.6084/m9.figshare.5245081
title: Phenotypic antibiotic susceptibility - (Item J)

description: Antimicrobial susceptibility was examined for the isolates derived from the 1st cultivation at the hospital lab towards a range of antibiotics and the results were interpreted in accordance to EUCAST breakpoints (http://www.eucast.org/clinical_breakpoints/).<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2018) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> </b><b>Scientific Reports</b>, doi:10.1038/s41598-018-22416-4.
DOI: 10.6084/m9.figshare.5245078.v1
title: Simulation for the Effects of Well Pressure and Initial Temperature on Methane Hydrate Dissociation

description: <b>1:</b> The equilibrium pressure corresponding to the current temperature.<b>2:</b> Model Verfication.<b>300minPw274</b>/<b>300minPw279</b>/<b>300minPw284</b>/<b>3000minPw274</b>/ <b>3000minPw279</b>/<b>3000minPw284</b>/<b>30000minPw274</b>/ <b>30000minPw279</b>/<b>30000minPw284: </b>Pressure distribution in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, and exploiting time of 300/3000/30000min.<b>300min5.0Pw</b>/<b>300min8.0Pw</b>/3<b>000min5.0Pw</b>/<b>3000min8.0Pw</b>/ <b>30000min5.0Pw</b>/<b>30000min8.0Pw: </b>Pressure distribution in reservoir under well pressure of 5MPa/8MPa and initial temperature of284K, exploiting time of 300/3000/30000min.<b>300min274T</b>/<b>300min279T</b>/<b>300min284T</b>/<b>3000min279T</b>/<b>3000min284T</b>/ <b>30000min279T</b>/<b>30000min284T: </b>Temperature distribution in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.<b>300min274K K</b>/<b>300min279K K</b>/<b>300min284K K</b>/<b>3000min274K K</b>/<b>3000min279K K</b>/<b>3000min284K K</b>/ <b>30000min274K K</b>/<b></b><b>30000min279K K</b>/<b>30000min284K K: </b> Permeability in reservoir under well pressure of 3MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.<b>Qg300min3.0 274</b>/<b> </b><b>Qg300min3.0 279</b>/<b> </b><b>Qg300min3.0 284</b>/<b>Qg300min5.0 284</b>/<b> </b><b>Qg300min8.0 284</b>/<b> </b><b>Qg3000min3.0 274</b>/<b>Qg3000min3.0 279</b>/<b> </b><b>Qg3000min3.0 284</b>/<b> </b><b>Qg3000min 5.0 284</b>/<b> Qg3000min 8.0 284: </b>Cmulative gas produced under well pressure of 3MPa/5MPa/8MPa and initial temperature of 274K/279K/284K, exploiting time of 300/3000/30000min.
DOI: 10.6084/m9.figshare.5245081.v2
title: Phenotypic antibiotic susceptibility - (Item J)

description: Antimicrobial susceptibility was examined for the isolates derived from the 1st cultivation at the hospital lab towards a range of antibiotics and the results were interpreted in accordance to EUCAST breakpoints (http://www.eucast.org/clinical_breakpoints/).<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2018) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> </b><b>Scientific Reports</b>, doi:10.1038/s41598-018-22416-4.
DOI: 10.6084/m9.figshare.5245054
title: Supplementary Material for: Fetal Tricuspid Regurgitation in the First Trimester as a Screening Marker for Congenital Heart Defects: Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Assessment of tricuspid flow has been reported to improve the performance of screening for aneuploidies and congenital heart defects (CHD). However, the performance of tricuspid regurgitation (TR) as a screening marker for CHD in euploid fetuses is yet to be established. The main aim of this meta-analysis was to establish the predictive accuracy of TR for CHD. <b><i>Methods:</i></b> MEDLINE, Embase, and the Cochrane Library were searched electronically utilizing combinations of the relevant medical subject heading for “fetus,” “tricuspid regurgitation,” and “first trimester.” The outcomes explored were prevalence of TR in an euploid population, strength of association between TR and CHD, and predictive accuracy of TR for CHD in euploid fetuses. Summary estimates of sensitivity, specificity, positive and negative likelihood ratios, and diagnostic odds ratio for the overall predictive accuracy of TR for the detection of CHD were computed using the hierarchical summary receiver-operating characteristics model. <b><i>Results:</i></b> A total of 452 articles were identified; 60 were assessed with respect to their eligibility for inclusion and a total of 4 studies were included in the study. TR was associated with an increased risk of CHD (RR: 9.6, 95% CI 2.8-33.5; I<sup>2</sup>: 92.7%). The strength of association between TR and CHD persisted when considering fetuses at risk for CHD, such as those with increased nuchal translucency (RR: 7.2, 95% CI 5.2-9.8; I<sup>2</sup>: 0%), while TR did not show any association with CHD when detected in a population at low risk for cardiac defects (RR: 9.3, 95% CI 0.8-111.8; I<sup>2</sup>: 93%). The overall diagnostic performance of TR in detecting CHD was poor in detecting CHD (sROC: 0.684, SE: 0.61) with a sensitivity of 35.2% (95% CI 26.9-44.1) and a specificity of 98.6% (95% CI 98.5-98.7). Detection of TR at the 11-14 weeks' scan showed a positive likelihood ratio of 7.2 (95% CI 5.3-9.8) in detecting CHD when applied to a population at risk for CHD such as fetuses with an increased nuchal translucency. <b><i>Conclusion:</i></b> The detection of TR in the first trimester increases the risk of CHD. However, isolated TR in the first trimester does not seem to be a strong predictor for CHD.
DOI: 10.6084/m9.figshare.5245081.v1
title: Phenotypic antibiotic susceptibility - (Item F)

description: Antimicrobial susceptibility was examined for the isolates derived from the 1st cultivation at the hospital lab towards a range of antibiotics and the results were interpreted in accordance to EUCAST breakpoints (http://www.eucast.org/clinical_breakpoints/).<br><br><b>Reference</b> <b>Kirstahler P, Bjerrum SS, Friis-Møller A, </b><b>la Cour M, Aarestrup FM, Westh H., and Pamp SJ. (2017) </b>Genomics-Based Identification of Microorganisms in Human Ocular Body Fluid.<b> Journal </b>Vol:Issue page-page.
DOI: 10.6084/m9.figshare.5245027
title: Dataset A&B EBP Survey-combined.sav

description: Combined survey data of 2,789 management practitioners in the UK, US, Australia, The Netherlands and Belgium regarding attitudes and barriers towards evidence-based practice in management.<br>
DOI: 10.6084/m9.figshare.5245006
title: Phylogenetic measures of biodiversity uncover pteridophyte centres of diversity and hotspots in Tuscany

description: Biodiversity studies traditionally use species as their analysis unit. However, observed biodiversity is not necessarily an indicator of significant biodiversity and therefore, should not be used alone, particularly when the results will be employed for conservation planning. Here, we examine pteridophyte diversity in Tuscany using 4668 geo-referenced pteridophyte records stored in Wikiplantbase #Toscana and calculating standard richness measures and phylogenetic indices; in addition, we assessed the environmental predictors of each diversity metric. Finally, we identified which areas hosting significantly high diversity are not adequately covered by protected areas or intersected by human activities. Although considerable diversity is distributed along Tuscany within areas traditionally recognised as biodiversity hotspots, important areas of diversity are identified only after the application of randomisation tests and through the phylogenetic metrics. Topographic ruggedness resulted the single most important variable predicting high value of all indices; temperature seasonality and temperature continentality resulted the secondary explanatory variables with a significant negative effect on most diversity indices.
DOI: 10.6084/m9.figshare.5244991
title: Early decreased TLR2 expression on monocytes is associated with their reduced phagocytic activity and impaired maturation in a porcine polytrauma model

description: data of the manuscript
DOI: 10.6084/m9.figshare.5245006.v1
title: Phylogenetic measures of biodiversity uncover pteridophyte centres of diversity and hotspots in Tuscany

description: Biodiversity studies traditionally use species as their analysis unit. However, observed biodiversity is not necessarily an indicator of significant biodiversity and therefore, should not be used alone, particularly when the results will be employed for conservation planning. Here, we examine pteridophyte diversity in Tuscany using 4668 geo-referenced pteridophyte records stored in Wikiplantbase #Toscana and calculating standard richness measures and phylogenetic indices; in addition, we assessed the environmental predictors of each diversity metric. Finally, we identified which areas hosting significantly high diversity are not adequately covered by protected areas or intersected by human activities. Although considerable diversity is distributed along Tuscany within areas traditionally recognised as biodiversity hotspots, important areas of diversity are identified only after the application of randomisation tests and through the phylogenetic metrics. Topographic ruggedness resulted the single most important variable predicting high value of all indices; temperature seasonality and temperature continentality resulted the secondary explanatory variables with a significant negative effect on most diversity indices.
DOI: 10.6084/m9.figshare.5244991.v1
title: Early decreased TLR2 expression on monocytes is associated with their reduced phagocytic activity and impaired maturation in a porcine polytrauma model

description: data of the manuscript
DOI: 10.6084/m9.figshare.5244685
title: <i>Tracheria troyana</i> (Krapovickas and Nasif, 2011): Redefinition, Environmental Distribution, and Heritage Conservation

description: The South American caviomorph ichnogenus <i>Tracheria troyana</i> is reevaluated here based on recently discovered specimens that allow a more thorough investigation of footprint taphonomy and ichnotaxonomy. The footprints include detailed autopodium morphology and more complete gait patterns than previously reported. The redefinition of <i>T. troyana</i> involves key aspects as digit impressions of the <i>manus</i> asymmetrically arranged and digit V being the shortest and at times do not print. It generally lacks metacarpal pads, resulting in almost digitigrade impressions and regularly preserved as tridactyl footprints. In the <i>pes</i> imprints, digits have a symmetrical arrangement. Phalangeal and metapodial pad impressions are preserved, occasionally showing the presence of two heel pads. Trackways denote a marked overstep in which the <i>pes</i> impressions are placed in front of the <i>manus</i>. New data about <i>T. troyana</i> environmental distribution shows that typically characterizes overbank facies of anastomosing and meandering fluvial systems, which may be reflecting a habitat preference the producer. Here, we also present new digitized 3D images of the original type material of <i>T. troyana</i>, in order to preserve these materials, which were previously only available for viewing in the field.
DOI: 10.6084/m9.figshare.5244685.v2
title: <i>Tracheria troyana</i> (Krapovickas and Nasif, 2011): Redefinition, Environmental Distribution, and Heritage Conservation

description: The South American caviomorph ichnogenus <i>Tracheria troyana</i> is reevaluated here based on recently discovered specimens that allow a more thorough investigation of footprint taphonomy and ichnotaxonomy. The footprints include detailed autopodium morphology and more complete gait patterns than previously reported. The redefinition of <i>T. troyana</i> involves key aspects as digit impressions of the <i>manus</i> asymmetrically arranged and digit V being the shortest and at times do not print. It generally lacks metacarpal pads, resulting in almost digitigrade impressions and regularly preserved as tridactyl footprints. In the <i>pes</i> imprints, digits have a symmetrical arrangement. Phalangeal and metapodial pad impressions are preserved, occasionally showing the presence of two heel pads. Trackways denote a marked overstep in which the <i>pes</i> impressions are placed in front of the <i>manus</i>. New data about <i>T. troyana</i> environmental distribution shows that typically characterizes overbank facies of anastomosing and meandering fluvial systems, which may be reflecting a habitat preference the producer. Here, we also present new digitized 3D images of the original type material of <i>T. troyana</i>, in order to preserve these materials, which were previously only available for viewing in the field.
DOI: 10.6084/m9.figshare.5244685.v1
title: <i>Tracheria Troyana</i> (Krapovickas and Nasif, 2011): Redefinition, Environmental Distribution, and Heritage Conservation

description: The South American caviomorph ichnogenus <i>Tracheria troyana</i> is reevaluated here based on recently discovered specimens that allow a more thorough investigation of footprint taphonomy and ichnotaxonomy. The footprints include detailed autopodium morphology and more complete gait patterns than previously reported. The redefinition of <i>T. troyana</i> involves key aspects as digit impressions of the <i>manus</i> asymmetrically arranged and digit V being the shortest and at times do not print. It generally lacks metacarpal pads, resulting in almost digitigrade impressions and regularly preserved as tridactyl footprints. In the <i>pes</i> imprints, digits have a symmetrical arrangement. Phalangeal and metapodial pad impressions are preserved, occasionally showing the presence of two heel pads. Trackways denote a marked overstep in which the <i>pes</i> impressions are placed in front of the <i>manus</i>. New data about <i>T. troyana</i> environmental distribution shows that typically characterizes overbank facies of anastomosing and meandering fluvial systems, which may be reflecting a habitat preference the producer. Here, we also present new digitized 3D images of the original type material of <i>T. troyana</i>, in order to preserve these materials, which were previously only available for viewing in the field.