cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8bphrnzhjr
title: A transcriptomic dataset comparing systemic sclerosis and systemic lupus erythematosus: differential gene expression, hub genes, and pathway enrichment

description: This dataset provides whole-transcriptome RNA sequencing (RNA-seq) data from patients with systemic sclerosis (SSc) and systemic lupus erythematosus (SLE), two autoimmune diseases that share overlapping immune features but also display distinct molecular signatures. Peripheral blood mononuclear cells (PBMCs) were collected from 10 SSc and 24 SLE patients who met the ACR/EULAR classification criteria, and total RNA was sequenced on the Illumina NovaSeq 6000 platform (150 bp paired-end).

The dataset includes:
Raw FASTQ files: quality-checked reads with adapters removed.
Processed expression matrices: normalized gene counts for all quantified genes.
Differential expression results: complete tables of significantly up- and down-regulated genes between SSc and SLE, generated using DESeq2.
Functional enrichment analysis: KEGG, Gene Ontology (GO), and Disease Ontology (DO) enrichment results highlighting pathways associated with immune dysregulation, fibrosis, and interferon signaling.
Hub gene and network analysis: co-expression networks and protein–protein interaction (PPI) data identifying potential key regulators, such as AP3D1, USP47, CUX1, and SETD1B.
Clinical metadata: anonymized patient demographic and clinical characteristics, including disease duration, organ involvement, and autoantibody profiles.
The value of this dataset lies in enabling comparative analyses between SSc and SLE at the transcriptomic level. Researchers can reuse these data to explore common and disease-specific molecular mechanisms, discover candidate biomarkers, develop predictive machine learning models, and identify potential therapeutic targets for autoimmune diseases.

All data are provided in both raw and processed forms, facilitating reproducibility and integration with other multi-omics resources.
DOI: 10.17632/8bphrnzhjr.3
title: A transcriptomic dataset comparing systemic sclerosis and systemic lupus erythematosus: differential gene expression, hub genes, and pathway enrichment

description: This dataset provides whole-transcriptome RNA sequencing (RNA-seq) data from patients with systemic sclerosis (SSc) and systemic lupus erythematosus (SLE), two autoimmune diseases that share overlapping immune features but also display distinct molecular signatures. Peripheral blood mononuclear cells (PBMCs) were collected from 10 SSc and 24 SLE patients who met the ACR/EULAR classification criteria, and total RNA was sequenced on the Illumina NovaSeq 6000 platform (150 bp paired-end).

The dataset includes:
Raw FASTQ files: quality-checked reads with adapters removed.
Processed expression matrices: normalized gene counts for all quantified genes.
Differential expression results: complete tables of significantly up- and down-regulated genes between SSc and SLE, generated using DESeq2.
Functional enrichment analysis: KEGG, Gene Ontology (GO), and Disease Ontology (DO) enrichment results highlighting pathways associated with immune dysregulation, fibrosis, and interferon signaling.
Hub gene and network analysis: co-expression networks and protein–protein interaction (PPI) data identifying potential key regulators, such as AP3D1, USP47, CUX1, and SETD1B.
Clinical metadata: anonymized patient demographic and clinical characteristics, including disease duration, organ involvement, and autoantibody profiles.
The value of this dataset lies in enabling comparative analyses between SSc and SLE at the transcriptomic level. Researchers can reuse these data to explore common and disease-specific molecular mechanisms, discover candidate biomarkers, develop predictive machine learning models, and identify potential therapeutic targets for autoimmune diseases.

All data are provided in both raw and processed forms, facilitating reproducibility and integration with other multi-omics resources.
DOI: 10.15468/dl.gzsaty
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Monoplacophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((80 0,90 0,90 10,80 10,80 0))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019309-251009101135966/datasets/export for details.
DOI: 10.15468/dl.pgspta
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cariamiformes)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((-70 0,-60 0,-60 10,-70 10,-70 0))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019308-251009101135966/datasets/export for details.
DOI: 10.17632/ndn3mwt25f
title: Comprehensive mapping of active transcription by human RNA polymerase III reveals a rate-limiting role for transcription termination

description: Raw image data for Comprehensive mapping of active transcription by human RNA polymerase III reveals a rate-limiting role for transcription termination by Mikolajczyk et al.
DOI: 10.17632/ndn3mwt25f.1
title: Comprehensive mapping of active transcription by human RNA polymerase III reveals a rate-limiting role for transcription termination

description: Raw image data for Comprehensive mapping of active transcription by human RNA polymerase III reveals a rate-limiting role for transcription termination by Mikolajczyk et al.
DOI: 10.17632/z875txg44t
title: Dragon Fruit Peel-Derived Heterogeneous Catalyst for Michael Addition Reactions and Methanolysis of PET Waste: A Green and Dual-Functional Approach

description: This is raw data for Dragon Fruit Peel-Derived Heterogeneous Catalyst for Michael Addition Reactions and Methanolysis of PET Waste: A Green and Dual-Functional Approach paper.
DOI: 10.17632/z875txg44t.1
title: Dragon Fruit Peel-Derived Heterogeneous Catalyst for Michael Addition Reactions and Methanolysis of PET Waste: A Green and Dual-Functional Approach

description: This is raw data for Dragon Fruit Peel-Derived Heterogeneous Catalyst for Michael Addition Reactions and Methanolysis of PET Waste: A Green and Dual-Functional Approach paper.
DOI: 10.17632/bk7rv2tswh
title: Strategic income shifting in uncertain times: Insights from economic policy uncertainty (Synthetic Data)

description: This is a replication package with synthetic data for the following paper: Strategic income shifting in uncertain times: Insights from economic policy uncertainty
DOI: 10.17632/bk7rv2tswh.2
title: Strategic income shifting in uncertain times: Insights from economic policy uncertainty (Synthetic Data)

description: This is a replication package with synthetic data for the following paper: Strategic income shifting in uncertain times: Insights from economic policy uncertainty
DOI: 10.17632/m2kj9y2z7v
title: Strategic income shifting in uncertain times (Synthetic data) (Oct.14, 2025)

description: This is a replication package for this paper: Strategic income shifting in uncertain times: Insights from economic policy uncertainty (Synthetic data)
DOI: 10.17632/m2kj9y2z7v.1
title: Strategic income shifting in uncertain times (Synthetic data) (Oct.14, 2025)

description: This is a replication package for this paper: Strategic income shifting in uncertain times: Insights from economic policy uncertainty (Synthetic data)
DOI: 10.60712/si-id58958.1
title: StrainInfo SI-ID 58958.1

description: StrainInfo dataset 58958 about a strain of Aliivibrio fischeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58959.1
title: StrainInfo SI-ID 58959.1

description: StrainInfo dataset 58959 about a strain of Aliivibrio fischeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59020.1
title: StrainInfo SI-ID 59020.1

description: StrainInfo dataset 59020 about a strain of Mycobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59021.1
title: StrainInfo SI-ID 59021.1

description: StrainInfo dataset 59021 about a strain of Mycobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59022.1
title: StrainInfo SI-ID 59022.1

description: StrainInfo dataset 59022 about a strain of Mycobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59023.1
title: StrainInfo SI-ID 59023.1

description: StrainInfo dataset 59023 about a strain of Flavobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59115.1
title: StrainInfo SI-ID 59115.1

description: StrainInfo dataset 59115 about a strain of Shewanella putrefaciens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59116.1
title: StrainInfo SI-ID 59116.1

description: StrainInfo dataset 59116 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59117.1
title: StrainInfo SI-ID 59117.1

description: StrainInfo dataset 59117 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59118.1
title: StrainInfo SI-ID 59118.1

description: StrainInfo dataset 59118 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58960.1
title: StrainInfo SI-ID 58960.1

description: StrainInfo dataset 58960 about a strain of Aliivibrio fischeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58961.1
title: StrainInfo SI-ID 58961.1

description: StrainInfo dataset 58961 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.dmumfd
title: Occurrence Download

description: A dataset containing 6483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepidium perfoliatum L.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6483 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079673-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id58962.1
title: StrainInfo SI-ID 58962.1

description: StrainInfo dataset 58962 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58963.1
title: StrainInfo SI-ID 58963.1

description: StrainInfo dataset 58963 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59024.1
title: StrainInfo SI-ID 59024.1

description: StrainInfo dataset 59024 about a strain of Yersinia ruckeri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59025.1
title: StrainInfo SI-ID 59025.1

description: StrainInfo dataset 59025 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59026.1
title: StrainInfo SI-ID 59026.1

description: StrainInfo dataset 59026 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59027.1
title: StrainInfo SI-ID 59027.1

description: StrainInfo dataset 59027 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59119.1
title: StrainInfo SI-ID 59119.1

description: StrainInfo dataset 59119 about a strain of Pseudomonas. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59121.1
title: StrainInfo SI-ID 59121.1

description: StrainInfo dataset 59121 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59122.1
title: StrainInfo SI-ID 59122.1

description: StrainInfo dataset 59122 about a strain of Flavobacterium lutescens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58964.1
title: StrainInfo SI-ID 58964.1

description: StrainInfo dataset 58964 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59123.1
title: StrainInfo SI-ID 59123.1

description: StrainInfo dataset 59123 about a strain of Flavobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58965.1
title: StrainInfo SI-ID 58965.1

description: StrainInfo dataset 58965 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58966.1
title: StrainInfo SI-ID 58966.1

description: StrainInfo dataset 58966 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58967.1
title: StrainInfo SI-ID 58967.1

description: StrainInfo dataset 58967 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59028.1
title: StrainInfo SI-ID 59028.1

description: StrainInfo dataset 59028 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59029.1
title: StrainInfo SI-ID 59029.1

description: StrainInfo dataset 59029 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59030.1
title: StrainInfo SI-ID 59030.1

description: StrainInfo dataset 59030 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59031.1
title: StrainInfo SI-ID 59031.1

description: StrainInfo dataset 59031 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59124.1
title: StrainInfo SI-ID 59124.1

description: StrainInfo dataset 59124 about a strain of Flavobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59125.1
title: StrainInfo SI-ID 59125.1

description: StrainInfo dataset 59125 about a strain of Flavobacterium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59126.1
title: StrainInfo SI-ID 59126.1

description: StrainInfo dataset 59126 about a strain of Pediococcus damnosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.7t23ep
title: Occurrence Download

description: A dataset containing 28963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Silene noctiflora L.)"
 ]
}

 The dataset includes 28963 records from 509 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079670-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id59127.1
title: StrainInfo SI-ID 59127.1

description: StrainInfo dataset 59127 about a strain of Pediococcus damnosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58968.1
title: StrainInfo SI-ID 58968.1

description: StrainInfo dataset 58968 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58969.1
title: StrainInfo SI-ID 58969.1

description: StrainInfo dataset 58969 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58970.1
title: StrainInfo SI-ID 58970.1

description: StrainInfo dataset 58970 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id58971.1
title: StrainInfo SI-ID 58971.1

description: StrainInfo dataset 58971 about a strain of Vibrio parahaemolyticus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59032.1
title: StrainInfo SI-ID 59032.1

description: StrainInfo dataset 59032 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59033.1
title: StrainInfo SI-ID 59033.1

description: StrainInfo dataset 59033 about a strain of Cytophaga. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59034.1
title: StrainInfo SI-ID 59034.1

description: StrainInfo dataset 59034 about a strain of Aeromonas caviae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59128.1
title: StrainInfo SI-ID 59128.1

description: StrainInfo dataset 59128 about a strain of Pediococcus damnosus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id59129.1
title: StrainInfo SI-ID 59129.1

description: StrainInfo dataset 59129 about a strain of Ancylobacter amanitiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.