cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4896532
title: Tertullian's "De spectaculis" annotated according to the WoPoss guidelines

description: This dataset contains <em>De spectaculis </em>by Tertullian as annotated by Séverine Reymond and reviewed by Francesca Dell’Oro in INCEpTION. This dataset follows the <em>WoPoss guidelines for annotation </em>(doi:10.5281/zenodo.3560951). Please notice that this is not the final annotated file: it is the result of the automatic annotation of linguistic features and the manual annotation of modal passages. More metadata and corrections will be added later on. To visualise the annotation: Download the file. Go to the INCEpTION demo website. After logging in, go to the right upper corner and, in “Import project files”, select the file you downloaded in step 1 (it must be a zip file: if your browser/operating system decompresses the folder by default, compress it as a .zip file). Then click on “Upload selected files”. Once the project was correctly imported, pay attention to green pop-up at the left bottom corner stating the name of the uploaded project (as default the name is “copy_of_WoPoss” but if other users have previously uploaded and not deleted the file, the name will change to avoid a rewriting). Select it on the list of projects to open it. Go to “Annotation” to overview the semantic annotation of <em>De spectaculis</em>. After you finish, you may go back to the dashboard (upper menu), select “Settings” and click of the red button “Delete” (upper right corner).
DOI: 10.6084/m9.figshare.14627346
title: Juul Clinical Trial Reporting Assessments

description: This is the dataset for our paper describing clinical trial reporting patterns of registered trials sponsored by Juul Labs Inc.<br>The Excel file contains our datasets and the PDF contains detailed slides of our final assessments.
DOI: 10.6084/m9.figshare.14627346.v1
title: Juul Clinical Trial Reporting Assessments

description: This is the dataset for our paper describing clinical trial reporting patterns of registered trials sponsored by Juul Labs Inc.<br>The Excel file contains our datasets and the PDF contains detailed slides of our final assessments.
DOI: 10.25625/xbsban
title: B03 plant genetic diversity

description: Percentage of Polymorphic Loci
DOI: 10.5281/zenodo.4432496
title: Dataset - Deep Recurrent Optical Flow Learning for Particle Image Velocimetry Data

description: This is the official dataset of Recurrent All-Pairs Field Transforms for Particle Image Velocimetry Data (RAFT-PIV) published in Nature Machine Intelligence. In this work, we propose a deep neural network-based approach for learning displacement fields in an end-to-end manner, focusing on the specific case of Particle Image Velocimetry (PIV). <br> PIV is a key approach in experimental fluid dynamics and of fundamental importance in diverse applications, including automotive, aerospace, and biomedical engineering. In contrast to standard PIV methods, our RAFT-PIV approach is general, largely automated, and provides much higher spatial resolution. This dataset is given as binary TFRECORD format.
DOI: 10.5281/zenodo.4432495
title: Dataset - Deep Recurrent Optical Flow Learning for Particle Image Velocimetry Data

description: This is the official dataset of Recurrent All-Pairs Field Transforms for Particle Image Velocimetry Data (RAFT-PIV) published in Nature Machine Intelligence. In this work, we propose a deep neural network-based approach for learning displacement fields in an end-to-end manner, focusing on the specific case of Particle Image Velocimetry (PIV). <br> PIV is a key approach in experimental fluid dynamics and of fundamental importance in diverse applications, including automotive, aerospace, and biomedical engineering. In contrast to standard PIV methods, our RAFT-PIV approach is general, largely automated, and provides much higher spatial resolution. This dataset is given as binary TFRECORD format.
DOI: 10.6084/m9.figshare.14784630
title: Supplementary Material for: Long Noncoding RNA GAS5 Targeting miR-221-3p/Cyclin-Dependent Kinase Inhibitor 2B Axis Regulates Follicular Thyroid Carcinoma Cell Cycle and Proliferation

description: <b><i>Introduction:</i></b> Follicular thyroid carcinoma (FTC) is more aggressive than the most common papillary thyroid carcinoma (PTC). However, the current research on FTC is less than PTC. Here, we investigated the effects of long noncoding RNA (lncRNA) GAS5 and miR-221-3p in FTC. <b><i>Methods:</i></b> Quantitative real-time polymerase chain reaction (qRT-PCR) was employed to detect GAS5 and miR-221-3p expression in the FTC tissues and cells. Cell proliferation was assessed by CCK8 and EdU assays. Flow cytometry was performed to determine the cell cycle. The dual-luciferase reporter assay was employed to validate the binding relationship of GAS5/miR-221-3p and miR-221-3p/cyclin-dependent kinase inhibitor 2B (CDKN2B). Western blot was conducted to measure the protein level of CDKN2B. <b><i>Results:</i></b> Our results displayed that GAS5 was downregulated, while miR-221-3p was upregulated in FTC tissues and cells. What’s more, overexpression of GAS5 or miR-221-3p inhibition induced G0/G1 phase arrest and inhibited cell proliferation of FTC cells. GAS5 acted as a sponge of miR-221-3p, and CDKN2B was a target gene of miR-221-3p. Additionally, GAS5 inhibited cell cycle and proliferation of FTC cells via reducing miR-221-3p expression to enhance CDKN2B expression. <b><i>Conclusion:</i></b> GAS5 induced G0/G1 phase arrest and inhibited cell proliferation via targeting miR-221-3p/CDKN2B axis in FTC. Thus, GAS5 may be a potential therapeutic target for the treatment of FTC.
DOI: 10.5281/zenodo.4915823
title: Pre-trained models for Activation Pattern as Embedding

description: The package contains the pre-trained models used in the paper "Activation Pattern as Embedding".
DOI: 10.5281/zenodo.4915822
title: Pre-trained models for Activation Pattern as Embedding

description: The package contains the pre-trained models used in the paper "Activation Pattern as Embedding".
DOI: 10.5281/zenodo.4954851
title: Uracil, C4H4N2O2

description: Uracil, C4H4N2O2
DOI: 10.5281/zenodo.4954850
title: Uracil, C4H4N2O2

description: Uracil, C4H4N2O2
DOI: 10.6084/m9.figshare.14784663
title: Data for figures and tables

description: Datasets used to create figures and tables in the paper Veilahti, Kovarskis, and Cowley (2021)<br>
DOI: 10.6084/m9.figshare.14784663.v2
title: Data for figures and tables

description: Datasets used to create figures and tables in the paper Veilahti, Kovarskis, and Cowley (2021)<br>
DOI: 10.6084/m9.figshare.14784663.v1
title: Data for figures and tables

description: Datasets used to create figures and tables in the paper Veilahti, Kovarskis, and Cowley (2021)<br>
DOI: 10.5519/qd.3yabdgds
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7029 records)
DOI: 10.5281/zenodo.4790961
title: Support data and codes for the evaluation experiment section of the paper: "Mass and geometry reconstruction of snowfall particles from multi angle snowflake camera (MASC) images"

description: Codes and data to support the evaluation of the 3D-GAN method, described in the article: "Mass and geometry reconstruction of snowfall particles from multi angle snowflake camera (MASC) images", submitted to AMTD in 2021. A README is included in the data/code, with details on how to reproduce the results shown in the paper.
DOI: 10.25345/c50r7r
title: MassIVE MSV000087622 - MudPIT proteomic profiling of lymphoblastoid cells from Nasu-Hakola subjects
title: Proteomic analysis was performed, by means of MudPIT platform, on Lymphoblastoid cell lines (LCLs) immortalized from B-Lymphocytes. LCLs were collected from each subject of an italian family, native of a restricted area of northern Italy and consisted of seven components: two patients with homozygous C-to-T mutation at position 97 in exon 2 of TREM2 gene (Ho); four healthy carriers with heterozygous mutation (He), and one healthy individual (Wt).
DOI: 10.6084/m9.figshare.14784675
title: Session-wise neurofeedback data

description: session_num - daily session number <br>within_session - number of the CENT session within this day's session <br>date_time - session start date and time to 1 second precision <br>raw_score - mean of ALL trial scores <br>basic_score - mean of trial scores &gt; 1 <br>TB_ratio - beta_base*beta_coef / theta_base*theta_coef <br>theta_base - recorded theta value <br>beta_base - recorded beta value <br>theta_coef - theta coefficient entered by trainer <br>beta_coef - beta coefficient entered by trainer <br>score - mean of trial scores &gt; 1 AND not marked bad by trainer <br>adj_score - adjusted score is the score * TB_ratio; except for inverse sessions, which were score * (theta*coef) / (beta*coef) <br>adj_transfer_score - adjusted score of the transfer trials <br>excitement - self-reported arousal/excitement before the session <br>hrs_since_sleep - self-reported hours since sleeping <br>hours_slept - self-reported duration of last sleep in hours <br>mood - self-reported valence (positive mood) before the session <br>motivation - self-reported motivation before the session <br>effort - self-reported effort after the session <br>frustration - self-reported frustration after the session <br>trials - total number of trials in session <br>rejected_trials - total number of trials in session marked bad by trainer <br>normal_not_inverse - binary code, 0=inverse session, 1=normal session <br>exclude - binary code, 0=1 or more good trials, 1=if all trials are marked bad by trainer! <br>enobio - either 4 or 8 depending on which Enobio was used.
DOI: 10.5441/001/1.vr6d4p42
title: Data from: GPS-profiling of retrograde navigational impairments associated with hippocampal lesion in homing pigeons

description: Gagliardo A, Colombo S, Pollonara E, Casini G, Rossino MG, Wikelski M, Bingman VP. 2021. GPS-profiling of retrograde navigational impairments associated with hippocampal lesion in homing pigeons. Behav Brain Res. doi:10.1016/j.bbr.2021.113408
description: The avian hippocampal formation (HF) is homologous to the mammalian hippocampus and plays a central role in the control of spatial cognition. In homing pigeons, HF supports navigation by familiar landmarks and landscape features. However, what has remained relatively unexplored is the importance of HF for the retention of previously acquired spatial information. For example, to date, no systematic GPS-tracking studies on the retention of HF-dependent navigational memory in homing pigeons have been performed. Therefore, the current study was designed to compare the pre- and post-surgical navigational performance of sham-lesioned control and HF-lesioned pigeons tracked from three different sites located in different directions with respect to home. The pre- and post-surgical comparison of the pigeons’ flight paths near the release sites and before reaching the area surrounding the home loft (4 km radius from the loft) revealed that the control and HF-lesioned pigeons displayed similarly successful retention. By contrast, the HF-lesioned pigeons displayed dramatically and consistently impaired retention in navigating to their home loft during the terminal phase of the homing flight near home, i.e., where navigation is supported by memory for landmark and landscape features. The data demonstrate that HF lesions lead to a dramatic loss of pre-surgically acquired landmark and landscape navigational information while sparing those mechanisms associated with navigation from locations distant from home.
DOI: 10.5441/001/1.vr6d4p42/1
title: Navigation with hippocampal lesion in homing pigeons (data from Gagliardo et al. 2021)

description: Gagliardo A, Colombo S, Pollonara E, Casini G, Rossino MG, Wikelski M, Bingman VP. 2021. GPS-profiling of retrograde navigational impairments associated with hippocampal lesion in homing pigeons. Behav Brain Res. doi:10.1016/j.bbr.2021.113408
description: The avian hippocampal formation (HF) is homologous to the mammalian hippocampus and plays a central role in the control of spatial cognition. In homing pigeons, HF supports navigation by familiar landmarks and landscape features. However, what has remained relatively unexplored is the importance of HF for the retention of previously acquired spatial information. For example, to date, no systematic GPS-tracking studies on the retention of HF-dependent navigational memory in homing pigeons have been performed. Therefore, the current study was designed to compare the pre- and post-surgical navigational performance of sham-lesioned control and HF-lesioned pigeons tracked from three different sites located in different directions with respect to home. The pre- and post-surgical comparison of the pigeons’ flight paths near the release sites and before reaching the area surrounding the home loft (4 km radius from the loft) revealed that the control and HF-lesioned pigeons displayed similarly successful retention. By contrast, the HF-lesioned pigeons displayed dramatically and consistently impaired retention in navigating to their home loft during the terminal phase of the homing flight near home, i.e., where navigation is supported by memory for landmark and landscape features. The data demonstrate that HF lesions lead to a dramatic loss of pre-surgically acquired landmark and landscape navigational information while sparing those mechanisms associated with navigation from locations distant from home.
DOI: 10.5441/001/1.vr6d4p42/2
title: Navigation with hippocampal lesion in homing pigeons (data from Gagliardo et al. 2021)-reference-data

description: Gagliardo A, Colombo S, Pollonara E, Casini G, Rossino MG, Wikelski M, Bingman VP. 2021. GPS-profiling of retrograde navigational impairments associated with hippocampal lesion in homing pigeons. Behav Brain Res. doi:10.1016/j.bbr.2021.113408
description: The avian hippocampal formation (HF) is homologous to the mammalian hippocampus and plays a central role in the control of spatial cognition. In homing pigeons, HF supports navigation by familiar landmarks and landscape features. However, what has remained relatively unexplored is the importance of HF for the retention of previously acquired spatial information. For example, to date, no systematic GPS-tracking studies on the retention of HF-dependent navigational memory in homing pigeons have been performed. Therefore, the current study was designed to compare the pre- and post-surgical navigational performance of sham-lesioned control and HF-lesioned pigeons tracked from three different sites located in different directions with respect to home. The pre- and post-surgical comparison of the pigeons’ flight paths near the release sites and before reaching the area surrounding the home loft (4 km radius from the loft) revealed that the control and HF-lesioned pigeons displayed similarly successful retention. By contrast, the HF-lesioned pigeons displayed dramatically and consistently impaired retention in navigating to their home loft during the terminal phase of the homing flight near home, i.e., where navigation is supported by memory for landmark and landscape features. The data demonstrate that HF lesions lead to a dramatic loss of pre-surgically acquired landmark and landscape navigational information while sparing those mechanisms associated with navigation from locations distant from home.
DOI: 10.6084/m9.figshare.14784744
title: Cuestionario validado sobre la educación online

description: Cuestionario validado sobre educación online (Pattier y García-Martín, 2021)
DOI: 10.6084/m9.figshare.14784744.v1
title: Cuestionario validado sobre la educación online

description: Cuestionario validado sobre educación online (Pattier y García-Martín, 2021)
DOI: 10.6084/m9.figshare.14784753
title: Experiment Data

description: 该文件包含来自实验室测试的所有数据
DOI: 10.6084/m9.figshare.14784735
title: Supplementary Material for: Association of Acute Kidney Injury with Outcomes in Patients Undergoing Transcatheter Mitral Valve Repair

description: <b><i>Introduction:</i></b> Although transcatheter mitral valve repair (TMVr) is a contrast-free procedure, prior single-center studies have demonstrated a high incidence of acute kidney injury (AKI) following TMVr. The main objective of this study was to examine risk factors for AKI, and its association with outcomes in patients undergoing TMVr. <b><i>Methods:</i></b> We queried the National Readmission Database to identify TMVr procedures performed between January 2014 and December 2017. Complex samples multivariable logistic and linear regression models were used to identify risk factors associated with AKI, as well as to determine the association between AKI and clinical outcomes (in-hospital mortality, index length of stay (LOS), 30-day all-cause readmissions, and 30-day heart failure [HF] readmissions). <b><i>Results:</i></b> Of 14,623 patients who underwent TMVr during the study period, 2,001 (13.6%) had a diagnosis of AKI. HF, chronic kidney disease, chronic liver disease, fluid/electrolyte disorder, weight loss, nonelective admission, cardiogenic shock, and bleeding/transfusion were independently associated with an increased risk of AKI. In patients undergoing TMVr, AKI was associated with an increased risk of in-hospital mortality (adjusted odds ratio [aOR], 4.94; 95% confidence interval [CI], 2.92–8.34), 30-day all-cause readmissions (aOR, 1.91; 95% CI, 1.49–2.46), 30-day HF readmissions (aOR, 2.30; 95% CI, 1.38–3.84), and longer index LOS (adjusted parameter estimate, 5.78; 95% CI, 5.26–6.41). <b><i>Conclusion:</i></b> AKI in the setting of TMVr is common and is associated with worse clinical outcomes. Further studies are needed to determine if optimizing renal function prior to TMVr may improve outcomes, as well as to understand the impact of TMVr itself on renal function.
DOI: 10.6084/m9.figshare.14784735.v1
title: Supplementary Material for: Association of Acute Kidney Injury with Outcomes in Patients Undergoing Transcatheter Mitral Valve Repair

description: <b><i>Introduction:</i></b> Although transcatheter mitral valve repair (TMVr) is a contrast-free procedure, prior single-center studies have demonstrated a high incidence of acute kidney injury (AKI) following TMVr. The main objective of this study was to examine risk factors for AKI, and its association with outcomes in patients undergoing TMVr. <b><i>Methods:</i></b> We queried the National Readmission Database to identify TMVr procedures performed between January 2014 and December 2017. Complex samples multivariable logistic and linear regression models were used to identify risk factors associated with AKI, as well as to determine the association between AKI and clinical outcomes (in-hospital mortality, index length of stay (LOS), 30-day all-cause readmissions, and 30-day heart failure [HF] readmissions). <b><i>Results:</i></b> Of 14,623 patients who underwent TMVr during the study period, 2,001 (13.6%) had a diagnosis of AKI. HF, chronic kidney disease, chronic liver disease, fluid/electrolyte disorder, weight loss, nonelective admission, cardiogenic shock, and bleeding/transfusion were independently associated with an increased risk of AKI. In patients undergoing TMVr, AKI was associated with an increased risk of in-hospital mortality (adjusted odds ratio [aOR], 4.94; 95% confidence interval [CI], 2.92–8.34), 30-day all-cause readmissions (aOR, 1.91; 95% CI, 1.49–2.46), 30-day HF readmissions (aOR, 2.30; 95% CI, 1.38–3.84), and longer index LOS (adjusted parameter estimate, 5.78; 95% CI, 5.26–6.41). <b><i>Conclusion:</i></b> AKI in the setting of TMVr is common and is associated with worse clinical outcomes. Further studies are needed to determine if optimizing renal function prior to TMVr may improve outcomes, as well as to understand the impact of TMVr itself on renal function.
DOI: 10.6084/m9.figshare.14784720
title: Supplementary Material for: Impact of Confinement in Patients under Long-Term Noninvasive Ventilation during the First Wave of the SARS-CoV-2 Pandemic: A Remarkable Resilience

description: <b><i>Background:</i></b> During the first wave of the SARS-CoV-2 pandemic in Switzerland, confinement was imposed to limit transmission and protect vulnerable persons. These measures may have had a negative impact on perceived quality of care and symptoms in patients with chronic disorders. <b><i>Objectives:</i></b> To determine whether patients under long-term home noninvasive ventilation (LTHNIV) for chronic respiratory failure (CRF) were negatively affected by the 56-day confinement (March–April 2020). <b><i>Methods:</i></b> A questionnaire-based survey exploring mood disturbances (HAD), symptom scores related to NIV (S<sup>3</sup>-NIV), and perception of health-care providers during confinement was sent to all patients under LTHNIV followed up by our center. Symptom scores and data obtained by ventilator software were compared between confinement and the 56 days prior to confinement. <b><i>Results:</i></b> Of a total of 100 eligible patients, 66 were included (median age: 66 years [IQR: 53–74]): 35 (53%) with restrictive lung disorders, 20 (30%) with OHS or SRBD, and 11 (17%) with COPD or overlap syndrome. Prevalence of anxiety (<i>n</i> = 7; 11%) and depressive (<i>n</i> = 2; 3%) disorders was remarkably low. Symptom scores were slightly higher during confinement although this difference was not clinically relevant. Technical data regarding ventilation, including compliance, did not change. Patients complained of isolation and lack of social contact. They felt supported by their relatives and caregivers but complained of the lack of regular contact and information by health-care professionals. <b><i>Conclusions:</i></b> Patients under LTHNIV for CRF showed a remarkable resilience during the SARS-CoV-2 confinement period. Comments provided may be helpful for managing similar future health-care crises.
DOI: 10.6084/m9.figshare.14784720.v1
title: Supplementary Material for: Impact of Confinement in Patients under Long-Term Noninvasive Ventilation during the First Wave of the SARS-CoV-2 Pandemic: A Remarkable Resilience

description: <b><i>Background:</i></b> During the first wave of the SARS-CoV-2 pandemic in Switzerland, confinement was imposed to limit transmission and protect vulnerable persons. These measures may have had a negative impact on perceived quality of care and symptoms in patients with chronic disorders. <b><i>Objectives:</i></b> To determine whether patients under long-term home noninvasive ventilation (LTHNIV) for chronic respiratory failure (CRF) were negatively affected by the 56-day confinement (March–April 2020). <b><i>Methods:</i></b> A questionnaire-based survey exploring mood disturbances (HAD), symptom scores related to NIV (S<sup>3</sup>-NIV), and perception of health-care providers during confinement was sent to all patients under LTHNIV followed up by our center. Symptom scores and data obtained by ventilator software were compared between confinement and the 56 days prior to confinement. <b><i>Results:</i></b> Of a total of 100 eligible patients, 66 were included (median age: 66 years [IQR: 53–74]): 35 (53%) with restrictive lung disorders, 20 (30%) with OHS or SRBD, and 11 (17%) with COPD or overlap syndrome. Prevalence of anxiety (<i>n</i> = 7; 11%) and depressive (<i>n</i> = 2; 3%) disorders was remarkably low. Symptom scores were slightly higher during confinement although this difference was not clinically relevant. Technical data regarding ventilation, including compliance, did not change. Patients complained of isolation and lack of social contact. They felt supported by their relatives and caregivers but complained of the lack of regular contact and information by health-care professionals. <b><i>Conclusions:</i></b> Patients under LTHNIV for CRF showed a remarkable resilience during the SARS-CoV-2 confinement period. Comments provided may be helpful for managing similar future health-care crises.
DOI: 10.7484/inspirehep.data.922e.4bn6
title: MadAnalysis 5 implementation of ATLAS-EXO-2014-06