cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14947770
title: Reproducibility Test Data of Foundation Model for Cancer Imaging x Mhub

description: This dataset provides test data for the FMCIB model integrated within the MHub platform, a robust solution for deploying, managing, and testing deep learning models tailored for medical imaging. 

Dataset Composition:



Sample Folder: Contains the input data utilized for testing the model’s functionality.

Reference Folder: Contains the corresponding output provided by the original model contributor.

Test.yml File: This file includes the original contributor’s test setup, which has been accepted by the MHub team.


Sample Data Source:

The sample images used in this dataset are sourced from public datasets available through the Imaging Data Commons (IDC), a repository that provides access to a wide range of medical imaging data. This ensures that the test cases reflect real-world clinical scenarios, facilitating robust validation of model performance.

Purpose and Utility:

The primary objective of this dataset is to enable the rigorous testing and validation of model performance within MHub workflows. To assess the performance of a model, users can process the sample data and compare the resulting output to the reference data. Additionally, users may inspect the sample and reference data independently to better understand the input-output structure that defines each model’s workflow.

This dataset streamlines the process of model validation. By providing a standardized testing framework, the dataset facilitates reproducible results and accelerates the development of reliable AI models for medical imaging.

About MHub:

MHub (mhub.ai) is an innovative platform designed to simplify the deployment, management, and testing of deep learning models for medical imaging. It enables researchers and clinicians to integrate AI-based solutions into clinical workflows while ensuring reproducibility and scalability. The platform provides a modular framework where users can execute complex workflows, such as image segmentation, classification, and registration, leveraging state-of-the-art AI models. MHub's goal is to accelerate the development and clinical adoption of medical imaging models by providing a streamlined, user-friendly environment for testing and validating new algorithms.

For more information on the platform and its capabilities, visit mhub.ai.
DOI: 10.15468/dl.7nb7az
title: Occurrence Download

description: A dataset containing 7305 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Zoological collections of Portuguese oceanographic campaigns in former colonial territories"
 ]
}

 The dataset includes 7305 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001141-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6g56r
title: Occurrence Download

description: A dataset containing 4169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amaranthus emarginatus Salzm. ex Uline & W.L.Bray)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 4169 records from 265 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001129-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eh5v3d
title: Occurrence Download

description: A dataset containing 436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pterygoplichthys pardalis (Castelnau, 1855))",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 436 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001142-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68zkm3
title: Occurrence Download

description: A dataset containing 1096154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "DatasetKey is one of (Texas A&M University Insect Collection, University of Texas, Biodiversity Center, Entomology Collection (UTIC))"
 ]
}

 The dataset includes 1096154 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001115-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukumre
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uruguay",
 "TaxonKey is Otaria byronia (de Blainville, 1820)"
 ]
}

 The dataset includes 210 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001130-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.53tuxj
title: Occurrence Download

description: A dataset containing 1897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is one of (Venezuela (Bolivarian Republic of), Colombia, Ecuador, Uruguay, Argentina, Brazil, Paraguay)",
 "DatasetKey is one of (Museo Argentino de Ciencias Naturales \"Bernardino Rivadavia\" (MACN). Herpetology National Collection (MACNHe), MBML-Anfibios - Coleção de Anfíbios MBML, iNaturalist Research-grade Observations, INSDC Sequences, ZFMK Herpetology collection, Collection Herpetology SMF, NMNH Extant Specimen Records (USNM, US), ZUEC-AMP - Coleção de Anfíbios do Museu de Zoologia da UNICAMP, Occurrences in SinBiota, FNJV - Fonoteca Neotropical Jacques Vielliard)",
 "TaxonKey is Boana albomarginata (Spix, 1824)"
 ]
}

 The dataset includes 1897 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001131-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14273108
title: Above-canopy precipitation measurements at Hartheim Forest Research Site (DE-Har) from 2017-01-01 to 2017-12-31 [L2]

description: Quality controlled and gap-filled continuous precipitation measurements above the forest canopy at Hartheim Forest Research Site (ICOS Associate Ecosystem Site DE-Har, UFR Code: HARTHM, 7.59814ºE, 47.93391ºN, 201 m) measured using a heated ombrometer Model 5.4031 (Adolf Thies GmbH & Co. KG, Göttingen, Germany). The ombrometer is operated on a 18 m tower just above the top of the canopy.



Quality controlled above-canopy precipitation data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2017.

Precipitation sums are provided on hourly, daily, monthly and annual scales.

Number of hours with precipitation >0.1 mm/hr, >1 mm/hr, >2.5 mm/hr, >5 mm/hr, >10 mm/hr, >20 mm/hr, and > 50 mm/hr provided on daily, monthly, and annual scale.

Number of days with precipitation >0.1 mm/day, >1 mm/day, >2.5 mm/day, >5 mm/day, >10 mm/day, >20 mm/day and >50 mm/day provided on monthly, and annual scale.

Precipitation does not distinguish between form (e.g. snow vs. rain)

Detailed information on gap-filled data is provided.

Note: All times are provided in UTC, not local time.


For more details read `HARTHM_2017_Precipitation_MetaData.txt`.
description: COPYRIGHT



Creative Commons Attribution 4.0 International. Copyright Albert-Ludwigs-Universität Freiburg, Professur für Umweltmeteorologie, Werthmannstrasse 10, Freiburg, Germany.


CREATOR

This work was created by the University of Freiburg, Germany.

ATTRIBUTION

The site is operated as part of the Integrated Carbon Observation System (ICOS).

Instruments and sensors in the dataset were operated by the Chair of Environmental Meteorology, University of Freiburg, Germany.

DISCLAIMER

The use of the work is at the user's own risk. The authors and/or the involved institutions, accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The author and/or the involved institutions are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Hartheim Forest Research Site

DE-Har in the ICOS Carbon Portal
DOI: 10.5281/zenodo.14947782
title: Above-canopy precipitation measurements at Hartheim Forest Research Site (DE-Har) from 2017-01-01 to 2017-12-31 [L2]

description: Quality controlled and gap-filled continuous precipitation measurements above the forest canopy at Hartheim Forest Research Site (ICOS Associate Ecosystem Site DE-Har, UFR Code: HARTHM, 7.59814ºE, 47.93391ºN, 201 m) measured using a heated ombrometer Model 5.4031 (Adolf Thies GmbH & Co. KG, Göttingen, Germany). The ombrometer is operated on a 18 m tower just above the top of the canopy.



Quality controlled above-canopy precipitation data are available and aggregated at 10min, 30min, hourly, daily, monthly and yearly resolution for the year 2017.

Precipitation sums are provided on hourly, daily, monthly and annual scales.

Number of hours with precipitation >0.1 mm/hr, >1 mm/hr, >2.5 mm/hr, >5 mm/hr, >10 mm/hr, >20 mm/hr, and > 50 mm/hr provided on daily, monthly, and annual scale.

Number of days with precipitation >0.1 mm/day, >1 mm/day, >2.5 mm/day, >5 mm/day, >10 mm/day, >20 mm/day and >50 mm/day provided on monthly, and annual scale.

Precipitation does not distinguish between form (e.g. snow vs. rain)

Detailed information on gap-filled data is provided.

Note: All times are provided in UTC, not local time.


For more details read `HARTHM_2017_Precipitation_MetaData.txt`.

Version history

Version 1.1.0 corrects for an error in the file "HARTHM_2017_Precipitation_10min_UTC.csv" where in the previous version (1.0.0) the time axis encountered an overflow after August 15. This did not affect other files at 30 min, hourly, daily, monthly and yearly resolutions. Version 1.1.0 also fixes a minor column labelling issue in the yearly file "HARTHM_2017_Precipitation_Yearly_UTC.csv".
description: COPYRIGHT



Creative Commons Attribution 4.0 International. Copyright Albert-Ludwigs-Universität Freiburg, Professur für Umweltmeteorologie, Werthmannstrasse 10, Freiburg, Germany.


CREATOR

This work was created by the University of Freiburg, Germany.

ATTRIBUTION

The site is operated as part of the Integrated Carbon Observation System (ICOS).

Instruments and sensors in the dataset were operated by the Chair of Environmental Meteorology, University of Freiburg, Germany.

DISCLAIMER

The use of the work is at the user's own risk. The authors and/or the involved institutions, accept no liability for material or non-material damage arising from the use or non-use or from the use of incorrect or incomplete information in this work. The author and/or the involved institutions are not responsible for any use that may be made of the information in this work. The legal provisions remain unaffected.

MATERIAL NOTICE

The notices cover data in databases, text and images contained in the work.

MATERIAL URI

Hartheim Forest Research Site

DE-Har in the ICOS Carbon Portal
DOI: 10.15468/dl.zr9d5b
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Silene boryi var. duriensis Samp.",
 "Year 1975-2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001132-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz785y
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypostomus punctatus Valenciennes, 1840)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001133-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezp2va
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cinchona pubescens Vahl"
 ]
}

 The dataset includes 216 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001143-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2qp8e
title: Occurrence Download

description: A dataset containing 3988 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zinnia peruviana (L.) L.)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3988 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001144-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13321512
title: Rockwell et al 2014

description: Rockwell, N. C., Lagarias, J. C., & Bhattacharya, D. (2014). Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in ecology and evolution, 2(66),

https://dx.doi.org/10.3389%2Ffevo.2014.00066

Updated: Added stop nodes for Rhodophyta. Trophic guild data for photosynthetic and parasitc Rhodophyta are covered by  Trophic guild data for microbial eukaryotes
DOI: 10.5281/zenodo.13321513
title: Rockwell et al 2014: Rockwell et al

description: Rockwell, N. C., Lagarias, J. C., & Bhattacharya, D. (2014). Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in ecology and evolution, 2(66), https://dx.doi.org/10.3389%2Ffevo.2014.00066
DOI: 10.5281/zenodo.14947779
title: Rockwell et al 2014

description: Rockwell, N. C., Lagarias, J. C., & Bhattacharya, D. (2014). Primary endosymbiosis and the evolution of light and oxygen sensing in photosynthetic eukaryotes. Frontiers in ecology and evolution, 2(66),

https://dx.doi.org/10.3389%2Ffevo.2014.00066

Updated: Added stop nodes for Rhodophyta. Trophic guild data for photosynthetic and parasitc Rhodophyta are covered by  Trophic guild data for microbial eukaryotes
DOI: 10.15468/dl.g6kp95
title: Occurrence Download

description: A dataset containing 360962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-01-03",
 "EventDate is less than or equal to 2025-02-02",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 360962 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001116-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvxezh
title: Occurrence Download

description: A dataset containing 6447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lagarosiphon major (Ridl.) Moss)",
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Literature Occurrence)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6447 records from 235 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001145-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9yfx9
title: Occurrence Download

description: A dataset containing 4079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amaranthus graecizans L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 4079 records from 267 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001146-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.seevkm
title: Occurrence Download

description: A dataset containing 2697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-109.03841 36.97904,-102.0254 36.97904,-102.0254 41.00616,-109.03841 41.00616,-109.03841 36.97904))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Populus tremuloides Michx.",
 "Year 2020-2025"
 ]
}

 The dataset includes 2697 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001134-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejetvq
title: Occurrence Download

description: A dataset containing 441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dichaea panamensis Lindl."
 ]
}

 The dataset includes 441 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001147-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqc4js
title: Occurrence Download

description: A dataset containing 11574859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11574859 records from 1301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001129-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc1lp6wc
title: CCDC 1480153: Experimental Crystal Structure Determination

description: Related Article: Shuo Yao, Xiaodong Sun, Bing Liu, Rajamani Krishna, Guanghua Li, Qisheng Huo, Yunling Liu|2016|J.Mater.Chem.A|4|15081|doi:10.1039/C6TA05142A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lsppr
title: CCDC 1483495: Experimental Crystal Structure Determination

description: Related Article: Chih-Min Wang, Li-Wei Lee, Tsung-Yuan Chang, Bing-Lun Fan, Chih-Ling Wang, Hsiu-Mei Lin, Kuang-Lieh Lu|2016|Chem.-Eur.J.|22|16099|doi:10.1002/chem.201602918
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lspsv
title: CCDC 1483498: Experimental Crystal Structure Determination

description: Related Article: Li Zhao, Ji-Xing Zhao, Qin-Qin An, Fei Wang|2016|Z.Kristallogr.-New Cryst.Struct.|231|1053|doi:10.1515/ncrs-2016-0047
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lspxz
title: CCDC 1483502: Experimental Crystal Structure Determination

description: Related Article: W. Furukawa, M. Takehara, Y. Inoue, C. Kitamura|2016|IUCrData|1|x160906|doi:10.1107/S2414314616009068
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lspy0
title: CCDC 1483503: Experimental Crystal Structure Determination

description: Related Article: B.K. Sagar, H.S. Yathirajan, J.P. Jasinski, C. Glidewell|2016|Acta Crystallogr.,Sect.E:Cryst.Commun.|72|969|doi:10.1107/S2056989016009075
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lsq03
title: CCDC 1483505: Experimental Crystal Structure Determination

description: Related Article: Ziqing Zuo, Ji Yang, Zheng Huang|2016|Angew.Chem.,Int.Ed.|55|10839|doi:10.1002/anie.201605615
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.