cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m1g3v/5
title: concatenated nDNA dataset - X-src alignment

description: NEXUS file containing the tyrosine-kinase class X-src oncogene (X-src) sequences in the concatenated nDNA dataset.
DOI: 10.5061/dryad.m1g3v/6
title: concatenated nDNA dataset - X-yes alignment

description: NEXUS file containing the tyrosine-kinase class X-yes oncogene (X-yes) sequences in the concatenated nDNA dataset.
DOI: 10.5061/dryad.n0k2f/1
title: Survey data of 13880 participants in Xiamen, China
DOI: 10.5061/dryad.pd790/2
title: Questionnaire_Round_2

description: Questionnaire sent to the expert panel for the 2nd round of the Delphi process.
DOI: 10.5061/dryad.pd790/3
title: Questionnaire_Round_3

description: Questionnaire sent to the expert panel for the 3rd round of the Delphi process.
DOI: 10.5061/dryad.pd790/4
title: Questionnaire_Round_4

description: Questionnaire sent to the expert panel for the 4th round of the Delphi process.
DOI: 10.5061/dryad.pd790/5
title: Results_Round1

description: Data from 1st Round
DOI: 10.5061/dryad.r390f/1
title: R code used

description: R code used
DOI: 10.5061/dryad.rf2qk/1
title: Bet-hedging data set

description: Data set documenting that Nothobranchius furzeri embryos (of known parentage incubated under common garden laboratory conditions: 25 degrees Celsius, in the dark, on moist peat moss) are capable of following either the diapause or direct-developing pathway, and once fully-developed embryos exhibit variation in hatching time.
DOI: 10.5061/dryad.rf2qk/2
title: Phenotypic plasticity data set

description: Data set documenting that the proportion of Nothobranchius furzeri embryos that enter diapause is influenced by environmental factors (temperature and light level).
DOI: 10.5061/dryad.rq120/1
title: Atlas of Mexican Triatominae
DOI: 10.5061/dryad.s2nr5/1
title: Data_EcoEvo_JEcol_utm

description: Data on arthropod communities, herbivory, and plant traits colleted from experiments. Please see the article for details on the treatment and experimental design.
DOI: 10.5061/dryad.t441k/1
title: Vegetation data of Songnen grassland in China

description: Include veagetation data of the original source of replicate plots and different treatments, such as plant species richness, Shannon-Wiener index,Pielou's index , density, height, coverage, and aboveground biomass.
DOI: 10.5061/dryad.23n65/1
title: WM behaviour data

description: the behaviour data for working memory group
DOI: 10.5061/dryad.23n65/2
title: WM_ERP(1-8)

description: the ERP data for working memory group
DOI: 10.5061/dryad.23n65/3
title: WM_ERP(10-16)

description: the ERP data for working memory group
DOI: 10.5061/dryad.23n65/4
title: WM_ERP(17-23)

description: the ERP data for working memory group
DOI: 10.5061/dryad.23n65/5
title: prime behaviour

description: the behaviour data for prime group
DOI: 10.5061/dryad.23n65/6
title: prime_ERP(1-7)

description: the ERP data for prime group
DOI: 10.5061/dryad.23n65/7
title: prime_ERP(8-15)

description: the ERP data for prime group
DOI: 10.5061/dryad.2h7d2/1
title: 0420_AST_115_1p05_p201_20Gs_Ave8_10mV2us_step250um

description: Digitized signal by oscilloscope for non-linear dispersion, measured on April 20, 2014. Experiment parameters: sampling rate = 20 Gs/s. Mechanical scan = 0.25 mm/step.
DOI: 10.5061/dryad.2h7d2/2
title: 0420_DCF3200_115_4p05_p201_20Gs_Ave8_5mV2us_step250um_filtered865MHz

description: Digitized signal by oscilloscope for linear dispersion, measured on April 20, 2014. Experiment parameters: sampling rate = 20 Gs/s. Mechanical scan = 0.25 mm/step.
DOI: 10.5061/dryad.2h7d2/3
title: Data FBG group delay

description: Designed and measured group delay profile of the fiber Bragg grating used in experiment
DOI: 10.5061/dryad.426rq/1
title: Site R Values Dryad

description: Queller and Goodnight R values from cooperatively breeding superb starlings (Lamprotornis superbus). Data are from nine sites at the Mpala Research Centre in central Kenya from birds present from 2001 through 2013.
DOI: 10.5061/dryad.4mt34/6
title: Table_S6

description: This file contains the variance-covariance data used to identify the most variable RP-HPLC peaks in the entire data set, adult data set only, and juvenile data set only.
DOI: 10.5061/dryad.4mt34/7
title: Cada CytB Alignment

description: Alignment of cytochrome b
DOI: 10.5061/dryad.4mt34/8
title: Cada ND5 Alignment

description: Alignment of ND5
DOI: 10.5061/dryad.4mt34/9
title: CadamanteusFinalTree

description: .tre file for Crotalus adamanteus phylogeny
DOI: 10.5061/dryad.54v2q.1
title: Data from: MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of &gt;230 subtropical marine species
DOI: 10.5061/dryad.54v2q.2/1.2
title: Script for extracting DNA sequences flanked by MiFish primer-match regions.

description: For each of the primer pair, the region with the smallest hamming distance is found in each DNA sequence. If the smallest hamming distance is larger than 3, such sequences are ignored because existence of indels or many mutations is assumed in primer-match regions. For those ignored sequences, manual extraction needs to be conducted afterwards.
DOI: 10.5061/dryad.54v2q.2/2.2
title: Analytical pipeline for DNA sequences amplified by MiFish primers

description: The MiFish pipeline works on the Linux/Unix environment. In the first step, the pipeline conducts quality-filtering of the MiFish sequence reads, including Phred score-based low-quality tail-trimming, length filtering, deletion of N base-containing reads, paired-end read assembly, and primer sequences removal. The fasta files of the reads that passed through these quality check are generated. As the next step, the pipeline performs sequence similarity-based species-assignment and the generation of a species by read-count table. This tab-spaced table provides species diversity information detected from the MiFish PCR meta-barcoding analysis of environmental DNAs.
DOI: 10.5061/dryad.550p3/1
title: PNG_2010cross-sectional_Dryad

description: Microscopy and qPCR results on P. falciparum and P. vivax parasite and gametocyte carriage in Papua New Guinea, and clinical status of participants.
DOI: 10.5061/dryad.575p1/4
title: 24-Locations Data Genepop

description: File contains genotypes for abalone from for 24 locations using 9 microsatellite loci (labeled as 24-locations data from the manuscript). Locations TSK, WAI, and WST were excluded due to null alleles. File is a text file in Genepop format. See Sampling locations, dates, and coordinates (Sampling_Information-2012-04-10.txt) for geographic coordinates and sampling dates.
DOI: 10.5061/dryad.6qd88/1
title: Loci

description: Loci contains information from both single locus and multiple loci estimates with the following fields:   # Study: Reference   # Population: Population description given in the source paper   # Species: Species   # Year: Year measurements made   # Season: Season measurements made   # Age.Class: Adults or chicks   # Sample.size: Number of individuals the estimate is based on   # Type.of.loci: Molecular marker used   # Total.loci: Number of loci the estimate is based on   # Number of sites: Only relevant for nucleotide diversity estimates   # Locus: Name of the locus   # Mean.diversity: Average diversity for either single or multilocus estimates   # SE.Mean.Diversity: Any standard errors reported   # SD.Mean.Diversity: Any standard deviations reported   # Diversity.Measure: Heterozygosity (Microsatellite, Allozyme, AFLP) or pi (Nucleotide diversities)   # Type.of.chromosome: Autosome or sex   # Type.of.site: For nucleotide diversities, i.e. silent, intronic, non-coding, synonymous, mixed sites   # Sampling strategy: Estimate from single or multiple populations
DOI: 10.5061/dryad.6qd88/2
title: Quan

description: Quan contains the heritability and coefficients of additive genetic variance estimates with the following fields:   # Study: Reference   # Population: Population description given in the source paper   # Type.of.relative: The type of relatives used in the estimation. AM = animal model, C = clonal, FS = full-sib, HS = half-sib, MPO = mid-parent-offspring, SPO = single-parent-offspring   # Male.Female: Was a maternal or paternal parent used in SPO or forming a HS family   # Lab.Field: Lab = laboratory estimates, Field = wild estimates, Field/Lab = parental measurements made in the wild and F1 estimates made in a laboratory   # Species: Species   # Trait: The trait measured (this is copied and pasted from the original study removing case and white space is necessary)   # Group: Information on the experimental groups used. E.g. experimentally different temperatures   # Trait.From.Hansen.et.al: Is the initial information for an estimate sourced from Hansen et al. (2011)? Additional information has been added here.   # Trait.Type: Classification of the trait into B = behaviour, LH = life-history, M = morphological, P = physiological   # Sample.size: Number of individuals used in the estimation   # Trait.Mean: Average value for the trait   # SD.Trait.Mean: Any standard deviations reported   # Precision.Trait.Mean: Any precision reported   # Precision.Measure.Trait.Mean: SE = standard error, CI - Confidence intervals, Range   # Heritability: Heritability estimate reported   # SD.Heritability: Any standard deviations reported   # Precision.Heritability: Any precision reported   # Precision.Measure.Heritability: SE = standard error, CI - Confidence intervals   # Var.H2: Variation in heritability estimate   # Cva: Coefficient of additive genetic variance   # SE.ia: Standard error reported for CVa
DOI: 10.5061/dryad.6qd88/3
title: Script

description: R script to process data and run models.
DOI: 10.5061/dryad.76sv3/1
title: ELLINGSEN - Role of cod in shaping beta diversity

description: Data consisted of all commercial and non-commercial fish species sampled by the DFO annual summer (July) research bottom trawl surveys of the Scotian Shelf, Northwest Atlantic over a period of 41 years (1970-2010). The data were extracted from the Ocean Biogeographic Information System (OBIS) database. All analyses were done using R.
DOI: 10.5061/dryad.8vp47/1
title: rawEEG-s1
DOI: 10.5061/dryad.8vp47/2
title: rawEEG-s2
DOI: 10.5061/dryad.8vp47/3
title: rawEEG-s3
DOI: 10.5061/dryad.8vp47/4
title: rawEEG-s4
DOI: 10.5061/dryad.8vp47/5
title: rawEEG-s5
DOI: 10.5061/dryad.8vp47/6
title: rawEEG-s6
DOI: 10.5061/dryad.b9k42/1
title: stat_files.tar

description: Quantitative data for each of the experiments represented in Fig1 - Fig4 and FigS3. For each experiment, the data is generated by an image analysis pipeline run over the YFP,CFP and DIC image series, and presented in a matlab object, whose fields are described in the attached README file.
DOI: 10.5061/dryad.b9k42/2
title: abs_maxc_annotated

description: Source data for Fig. 4b, CFP part. The fields are described in the attached README file.
DOI: 10.5061/dryad.b9k42/3
title: abs_maxy_annotated

description: Source data for Fig. 4b, YFP part.
DOI: 10.5061/dryad.fb48n/1
title: Mass and CO2

description: Each line provides information for one individual cricket (mass, percent time spent calling, and CO2 production). Data correspond to Figure 2.
DOI: 10.5061/dryad.fb48n/2
title: Pulse rate and tooth number

description: Each line provides the pulse rate for an individual cricket and the number of teeth in the file of that cricket. Raw data for figure 4
DOI: 10.5061/dryad.m1g3v/10
title: concatenated mtDNA + nDNA dataset - RPS7 alignment

description: NEXUS file containing the RPS7 sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.m1g3v/11
title: concatenated mtDNA + nDNA dataset - X-src alignment

description: NEXUS file containing the X-src sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.m1g3v/12
title: concatenated mtDNA + nDNA dataset - X-yes alignment

description: NEXUS file containing the X-yes sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.m1g3v/13
title: concatenated mtDNA + nDNA dataset - Glyt alignment

description: NEXUS file containing the Glyt sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.m1g3v/14
title: concatenated mtDNA GARLI ML tree

description: Newick format tree file of the single 'best' maximum-likelihood tree resulting from our analysis of the concatenated mtDNA dataset in GARLI.
DOI: 10.5061/dryad.m1g3v/15
title: concatenated mtDNA GARLI ML tree - alt topology

description: Newick format tree file containing the single 'best' maximum-likelihood tree resulting from an additional analysis of the concatenated mtDNA dataset in GARLI.  This 'alternative' topology differs from the best ML topology presented in the paper, for example in recovering sample "172554" as the most basal member of clade 2.
DOI: 10.5061/dryad.m1g3v/16
title: concatenated mtDNA + nDNA GARLI ML tree

description: Newick format tree file containing the GARLI topology shown in Fig. 3A.
DOI: 10.5061/dryad.m1g3v/7
title: concatenated nDNA dataset - Glyt alignment

description: NEXUS file containing the sequences of glycosyltransferase (Glyt) sequences in the concatenated nDNA dataset.
DOI: 10.5061/dryad.m1g3v/8
title: concatenated mtDNA + nDNA dataset - mtDNA alignment

description: NEXUS file containing the mtDNA sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.m1g3v/9
title: concatenated mtDNA + nDNA dataset - LDHA alignment

description: NEXUS file containing the ldh-A sequences in the concatenated mtDNA + nDNA dataset.
DOI: 10.5061/dryad.10b95/1
title: Site data for populations used in study

description: Site-level means for all variables used in our analysis.
DOI: 10.5061/dryad.23n65/8
title: prime_ERP(16-22)

description: the ERP data for prime group
DOI: 10.5061/dryad.2r5r9/1
title: plot and tree data Abaco and Eleuthera

description: Location and environmental data for 42 vegetation plots (10 m radius circular) located on Abaco and Eleuthera in The Bahamas, collected between 2009-2013 followed by species and diameter at 1.3m height on tree for each tree &gt;=5cm diameter in each plot.
DOI: 10.5061/dryad.4ft7n/1
title: Soil, vegetation, bird, and butterfly data

description: Data from Myers, M.C., J.T. Mason, B.J. Hoksch, C.A. Cambardella, J.D. Pfrimmer (2015) Birds and butterflies respond to soil-induced habitat heterogeneity in experimental plantings of tallgrass prairie species managed as agroenergy crops in Iowa, USA.  Journal of Applied Ecology.  This Excel file includes separate sheets containing the soil, vegetation, and bird and butterfly assemblage data analyzed in the paper. Four-letter column labels for species abundances are derived from the first two letters of the genus and species names (e.g. Chondestes grammacus = "chgr").  Species lists are available from the online Supporting Information. Please contact Mark Myers (mark.myers@uni.edu) with inquiries.
DOI: 10.5061/dryad.5pc3g/1
title: Appendix Data Table

description: Data on Proterozoic fossil diversity used for analysis in this study. All data compiled from the literature.
DOI: 10.5061/dryad.5pc3g/2
title: Appendix References

description: All references cited in the Appendix data table
DOI: 10.5061/dryad.676tf/1
title: Schueth et al. K/Pg nannofossil recovery Supplement

description: Supplemental Materials for the manuscript "The role of regional survivor incumbency in the evolutionary recovery of calcareous nannoplankton from the Cretaceous/Paleogene (K/Pg) mass extinction." Includes supplemental figures, supporting information for main text and age models used in analysis.
DOI: 10.5061/dryad.676tf/2
title: Schueth et al. K/Pg nannofossil recovery Supplement - Cluster Dendrogram

description: Additional supplement for the article "The role of regional survivor incumbency in the evolutionary recovery of calcareous nannoplankton from the Cretaceous/Paleogene (K/Pg) mass extinction" - contains the cluster analysis results with dendrograms and taxa abundances plotted along with dendrograms.
DOI: 10.5061/dryad.6k72n/1
title: DATA weight decrease in litter bags with and without Orchestia gammarellus

description: File presents data from litter bag experiment to investigate the effect of Orchestia gammarellus on litter decomposition. Litter bags were in Orchestia gammarellus addition and removal  treatments, in two different vegetation types: late and early successional vegetation. Litter weight decrease (of original 10 grams) was determined in presence and absence of Orchestia gammarellus.
DOI: 10.5061/dryad.6k72n/2
title: DATA vegetation biomass after 2-year field experiment

description: File presents data vegetation biomass data from 2-year manipulation experiment with  Orchestia gammarellus was addition, removed and control treatments in early (Limonium vulgare) and late successional (Elytrigia atherica) vegetationtypes. Vegetation biomass was determined in a 50x50 cm square, in July 2010. As a result of a mistake during the sample collection, two data points are missing.
DOI: 10.5061/dryad.6k72n/3
title: DAT Nmin, moisture

description: File presents data from 2-year manipulation experiment with  Orchestia gammarellus addition, removed and control treatments in two different vegetation types. During this experiment, nutrient mineralization in the various treaments was monitored. This file contains data on total N mineralization, NH4 and NO3 as well as the availability of these. It also contains data on soil moisture.
DOI: 10.5061/dryad.6k72n/4
title: DATA Orchestia numbers and environmental variables along successional gradient

description: File contains information on Orchestia gammarellus abundances and a number of environmental parameters along a chronosequence gradient on the salt marsh of Schiermonnikoog.
DOI: 10.5061/dryad.6k72n/5
title: DAT soil redox potentials Orchestia Lab experiment

description: In a lab experiment we added Orchestia gammarellus to compacted salt marsh soils to investigate its effect on soil aeration and facilitation of a successional plant species, Elytrigia atherica. During the experiment we measured the redox potentials every 2 weeks.
DOI: 10.5061/dryad.6k72n/6
title: Data on other variables in the lab experiment

description: In a lab experiment we added Orchestia gammarellus to compacted salt marsh soils to investigate its effect on soil aeration and facilitation of a successional plant species, Elytrigia atherica. File contains data on plant performance of Elytrigia atherica, seedling germination, and survival of Orchestia gammarellus.
DOI: 10.5061/dryad.6mp65/10
title: Inter-species average PhiST matrix

description: Inter-species average PhiST matrix displayed in a Neighbor-joining tree built in PHYLIP (Figure 1a)
DOI: 10.5061/dryad.6mp65/4
title: Genotypes_Structure_Figure1

description: Genotypes in Structure format. One SNP per RAD locus as in Figure 1b.
DOI: 10.5061/dryad.6mp65/5
title: Genotypes_Structure_Figure4

description: Gentoypes in Structure format. One SNP per RAD locus as in Figure 4c.
DOI: 10.5061/dryad.6mp65/6
title: Restriction Site Associated DNA data

description: Compressed file containing quality-filtered and demultiplexed reads for each individual in the study. Files are identified by species name followed by sample number as shown in Table S1.
DOI: 10.5061/dryad.6mp65/7
title: Fst estimates for each locus - RANDOMIZED dataset

description: Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S. palustris; 6-S. ruficollis.
DOI: 10.5061/dryad.6mp65/8
title: Fst estimates for each locus

description: Species are coded as follows: 1-S. bouvreuil; 2-S. pileata; 3-S. hypoxantha; 4-S. melanogaster; 5-S. palustris; 6-S. ruficollis.
DOI: 10.5061/dryad.6mp65/9
title: Output from Stacks assembly

description: This folder contains the Stacks output from the RAD assembly (M=n=5). There are four files per sample (72 samples in total) plus three catalog files (291 files in total). Samples are identified by species name followed by collection number as indicated in Table S1.
DOI: 10.5061/dryad.88v79/1
title: Key to Andaman lizard and frog data

description: Data on the islands that were sampled during the study
DOI: 10.5061/dryad.88v79/2
title: Andaman frog data

description: Data from Andaman islands on abundances of frogs from the forest floor. Sampling was done using 10 x 10 m quadrats that were open (not fenced) and bounded (that were fenced).
DOI: 10.5061/dryad.88v79/3
title: Andaman lizard data

description: Data from Andaman islands on abundances of lizards from the forest floor. Sampling was done using 10 x 10 m quadrats that were open (not fenced) and bounded (that were fenced).
DOI: 10.5061/dryad.8b203/1
title: Sequence Data

description: Sequence data of known binding sites for Dorsal transcription factors, and sequence data of known CRMs (see README file inside the folder).
DOI: 10.5061/dryad.8vp47/10
title: rawEEG-s10
DOI: 10.5061/dryad.8vp47/11
title: rawEEG-s11
DOI: 10.5061/dryad.8vp47/12
title: rawEEG-s12
DOI: 10.5061/dryad.8vp47/13
title: rawEEG-s13
DOI: 10.5061/dryad.8vp47/14
title: rawEEG-s15
DOI: 10.5061/dryad.8vp47/15
title: rawEEG-s14
DOI: 10.5061/dryad.8vp47/7
title: rawEEG-s7
DOI: 10.5061/dryad.8vp47/8
title: rawEEG-s8
DOI: 10.5061/dryad.8vp47/9
title: rawEEG-s9
DOI: 10.5061/dryad.d30k7/1
title: DataFiles in zipped format

description: These will unzip into binary data files that can be read by the MATLAB file DataOpen.m also contained within the zipped directory. The file CellInformation.csv provides a key to the data sets.
DOI: 10.5061/dryad.fb48n/3
title: Mass, amplitude, and time spent calling

description: Sheet 1 contains the mass and percent of time spent calling. Sheet 2 contains mass and call amplitude. In both cases, each line represents a measurement on one cricket. Raw data for Figure 5.
DOI: 10.5061/dryad.fb48n/4
title: Supplemental amplitude data

description: Provides mass and relative amplitude (used to create supplemental figure).
DOI: 10.5061/dryad.gv940/1
title: aflpdata_Pyrenees_Collin_Fumagalli

description: This table contains 1930 AFLP markers from Phoxinus phoxinus from the Pyrenees. Population number, and individual ID are indicated. Individual IDs correspond to the first 2 letters of the population name, followed by the individual number. AFLP data are coded as: 0=recessive allele, 1= dominant allele
DOI: 10.5061/dryad.gv940/2
title: mitochondiral_alignement_Pphoxinus

description: Nexus alignement file containing partial mitochondrial DNA control region sequences
DOI: 10.5061/dryad.j151j/1
title: A549-siRNA-FGFR2-ER

description: Raw data
DOI: 10.5061/dryad.j151j/10
title: raw fig4

description: Raw data - TUSC2 repressed FGFR2 expression in H1299 cells
DOI: 10.5061/dryad.j151j/2
title: AZD4547-Erlotinib combinaiton in A549 cells repeat

description: Raw data
DOI: 10.5061/dryad.j151j/3
title: AZD4547-Erlotinib combination in A549, H1299 H1650

description: Raw data
DOI: 10.5061/dryad.j151j/4
title: Copy of heatmap-rawdata-normdata

description: Raw data
DOI: 10.5061/dryad.j151j/5
title: Copy of result-heatmap-GeneExp

description: Raw data
DOI: 10.5061/dryad.j151j/6
title: Copy of result-heatmap-RPPA

description: Raw data
DOI: 10.5061/dryad.j151j/8
title: H1299 h322 h460 rapa-er combination

description: Raw data
DOI: 10.5061/dryad.j151j/9
title: raw fig 3c

description: Raw data - in vivo effect of TUSC2 + ER
DOI: 10.5061/dryad.m1g3v/17
title: concatenated nDNA GARLI ML tree

description: Newick format tree file containing the GARLI topology shown in Fig. 3B.
DOI: 10.5061/dryad.m1g3v/18
title: concatenated mtDNA + nDNA *BEAST species tree

description: Newick format tree file containing the species tree shown in whole or in part in Fig. 4 and S3B Fig.
DOI: 10.5061/dryad.m1g3v/19
title: concatenated mtDNA BEAST tree

description: Newick format tree file containing the time tree resulting from our analysis of the concatenated mtDNA dataset in BEAST, which is shown in S3A Fig.
DOI: 10.5061/dryad.m1g3v/20
title: LDHA BEAST tree

description: Newick format tree file containing the time tree resulting from our analysis of the ldh-A dataset in BEAST, which is shown in S4 Fig.