cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25887104
title: Code and data to run the simulations and analyses from The biotic and abiotic contexts of ecological selection mediate the dominance of distinct dispersal strategies in competitive metacommunities

description: SI_Code_Data.zip
DOI: 10.6084/m9.figshare.25887110
title: Supplemental Information F - Data and code from Cannibalism facilitated by parasite infection induces dispersal in a semi-aquatic insect

description: Supplemental Information Section F containing R code and data files
DOI: 10.15468/dl.ueejp7
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-82.254 -27.26213,-28.97228 -27.26213,-28.97228 14.49871,-82.254 14.49871,-82.254 -27.26213))",
 "OccurrenceStatus is Present",
 "TaxonKey is Paracheirodon axelrodi (Schultz, 1956)"
 ]
}

 The dataset includes 239 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035794-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9aqk3d
title: Occurrence Download

description: A dataset containing 513 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Monopis ethelella (Newman, 1856))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 513 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035796-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25887116
title: Raw Data from Coinfection accelerates transmission to new hosts despite no effects on virulence and parasite growth

description: Godinho_data_11_4_24.xlsx
DOI: 10.15468/dl.2ndh2y
title: Occurrence Download

description: A dataset containing 31008 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caprimulgus ruficollis Temminck, 1820",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 31008 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035795-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zjg3k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Deltapolyomavirus)",
 "Continent is one of (Africa)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035798-240506114902167/datasets/export for details.
DOI: 10.15468/dl.u47se4
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinea translucens Meyrick, 1917)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035799-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bms935
title: Occurrence Download

description: A dataset containing 6704 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Actualización y adiciones a la Colección de Poliquetos del Instituto de Ciencias del Mar y Limnología, UNAM"
 ]
}

 The dataset includes 6704 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035800-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97naz5
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is c3813ce6-3650-4e37-ac9f-7cb7ef224e10",
 "Country is one of (Philippines)"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035802-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k7wj4f
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "InstitutionKey is c3813ce6-3650-4e37-ac9f-7cb7ef224e10",
 "Country is one of (Philippines)"
 ]
}

 The dataset includes 10 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035803-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkgcrq
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinea dubiella Stainton, 1859)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 69 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035804-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy8av8
title: Occurrence Download

description: A dataset containing 239567 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aegolius funereus (Linnaeus, 1758)",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 239567 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035785-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5w5kum
title: Occurrence Download

description: A dataset containing 429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tinea pallescentella Stainton, 1851)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 429 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035806-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kxn2b3
title: Occurrence Download

description: A dataset containing 6704 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Actualización y adiciones a la Colección de Poliquetos del Instituto de Ciencias del Mar y Limnología, UNAM"
 ]
}

 The dataset includes 6704 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035807-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25681047.v2
title: SI code from Multiscale selection in spatially structured populations

description: Simulation code and analysis scripts of the SI model
DOI: 10.6084/m9.figshare.25681053.v1
title: Supplementary Materials from Multiscale selection in spatially structured populations

description: DoekesHermsen_CodeAltruism_ESM
DOI: 10.5281/zenodo.11242582
title: MD simulation of POPC bilayer using a force field calibrated to NMR order parameters

description: Force field parameters and simulation trajectory for 34-lipid bilayer simulation where the force field has been calibrated to reproduce the NMR C-H 13C order parameters. Temperature is 300K, and simulation was conducted in NPT ensemble with asymmetric pressure coupling. The trajectory is 1 microsecond long. The simulation was started from an equilibrated conformation and few tens of nanoseconds of pre-equilibration was run before obtaining the 1 microsecond production run. The trajectory has been centered to the simulation box. The simulations where conducted on GROMACS 2020 (GPU).
DOI: 10.5281/zenodo.11242583
title: MD simulation of POPC bilayer using a force field calibrated to NMR order parameters

description: Force field parameters and simulation trajectory for 34-lipid bilayer simulation where the force field has been calibrated to reproduce the NMR C-H 13C order parameters. Temperature is 300K, and simulation was conducted in NPT ensemble with asymmetric pressure coupling. The trajectory is 1 microsecond long. The simulation was started from an equilibrated conformation and few tens of nanoseconds of pre-equilibration was run before obtaining the 1 microsecond production run. The trajectory has been centered to the simulation box. The simulations where conducted on GROMACS 2020 (GPU).
DOI: 10.15468/dl.vtkf3j
title: Occurrence Download

description: A dataset containing 217854 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caprimulgus europaeus Linnaeus, 1758",
 "BasisOfRecord is one of (Human Observation, Observation)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "Country is one of (Finland, Ireland, Sweden, Cyprus, Portugal, Netherlands, France, Bulgaria, Romania, Spain, Poland, Czechia, Malta, United Kingdom of Great Britain and Northern Ireland, Austria, Croatia, Slovenia, Slovakia, Germany, Denmark, Italy, Belgium, Gibraltar, Lithuania, Greece, Luxembourg, Latvia, Estonia, Hungary)"
 ]
}

 The dataset includes 217854 records from 1280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035787-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15493/dea.mims.605207
title: Analysed Nitrate isotope data from the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruise on the Algoa Voyage 235, February 2017

description: Analysed Nitrate isotope data from the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruise on the Algoa Voyage 235, February 2017
description: Nitrate isotope data for the Integrated Ecosystem Programme: Southern Benguela (IEP:SB): Feb 2017.IEP:SB focuses on the biologically productive, cold waters of the Benguela Current Large Marine Ecosystem, which are inherently variable on short time-scales and responsive to changing weather patterns. The research aims to provide relevant, reliable and improved assessment of the ecosystem, in support of its effective management, preservation and conservation, so that South Africans can benefit from a healthy and well-functioning ocean environment. The overarching objective is to enhance understanding in process studies by assessing the importance, timing and magnitude of mechanisms and processes that influence the Southern Benguela ecosystem structure and functioning, including the climate variability.
description: Nitrate N and O isotope ratios were measured using the “denitrifier method” (Sigman et al. 2001; Casciotti et al. 2002; McIlvin and Casciotti 2011). Briefly, nitrate is added to active denitrifying bacteria that lack a terminal N2O reductase enzyme and converts aqueous nitrate quantitatively to N2O gas. The N and O isotope ratios of the N2O gas are then analysed by isotope ratio mass spectrometry (IRMS).
DOI: 10.15493/dea.mims.26000000
title: St Helena Bay Monitoring Line (SHBML) on the Africana Voyage 230, February 2007

description: This St Helena Bay Monitoring Line (SHBML) cruise was conducted on the Africana Voyage 230 in February 2007. This is a long-term monitoring line conducted off the coast of Elands/St Helena Bay on the west coast of South Africa. SHBML started in 2000 as a BENEFIT-driven project on "shipboard monitoring" which linked with similar lines run in Namibia and Angola. The aims were to obtain seasonal and interannual information on the hydrology and productivity of the area. It was incorporated under the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) in 2013 consolidating a long-term, multi-decadal time-series (from 1951 onward) of information for this important region and has continued monitoring in the form of the IEP:SB. The programme is a multi-disciplinary, collaborative and capacity building platform undertaking relevant science, including updating technology, with the aim to develop ecosystem indicators that can be used to effectively monitor and understand the Southern Benguela. These include physical, chemical, planktonic, microbial, seabird, marine mammal, benthic and pollution (plastic) ecosystem indicators as required by ecosystem-based management regarding the following priorities: ocean warming, ocean acidification, trophic functioning, pollution and water quality. It is on-going monitoring programme.
DOI: 10.15493/dea.mims.605201
title: Analysed Particulate Organic Matter data from the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruise on the Algoa Voyage 235, February 2017

description: Analysed Particulate Organic Matter data from the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruise on the Algoa Voyage 235, February 2017
description: Particulate Organic Matter data (stable isotope) for the Integrated Ecosystem Programme: Southern Benguela (IEP:SB): Feb 2017. IEP:SB focuses on the biologically productive, cold waters of the Benguela Current Large Marine Ecosystem, which are inherently variable on short time-scales and responsive to changing weather patterns. The research aims to provide relevant, reliable and improved assessment of the ecosystem, in support of its effective management, preservation and conservation, so that South Africans can benefit from a healthy and well-functioning ocean environment. The overarching objective is to enhance understanding in process studies by assessing the importance, timing and magnitude of mechanisms and processes that influence the Southern Benguela ecosystem structure and functioning, including the climate variability.
description: Filters were combusted in a Flash 2000 organic Elemental Analyzer and the isotope ratios of the resulting gases (N2) analysed with an in-line Delta V Plus IRMS via a Conflo IV gas control unit. A blank combustion followed every filter sample to ensure carry over from one sample to the next is reduced as much as possible. Three in-house standards were run at regular intervals: Merck Gel, a proteinaceous gel produced by Merck with a δ15N of 7.5‰, Valine, a branch chain amino acid with a δ15N of 12.1‰ purchased from Sigma, and an NH4Cl standard, with a δ15N of -0.6‰. These standards have been calibrated against IAEA reference materials. The samples were run in batches of 30-50 samples with standards run after every 10 samples. The δ15N of PON on the filters was calculated using equation 1, with Rstandard being a N2 reference gas in this gas.
DOI: 10.15493/dea.mims.26000012
title: St Helena Bay Monitoring Line (SHBML) on the Africana Voyage 271, February 2011

description: This St Helena Bay Monitoring Line (SHBML) cruise was conducted on the Africana Voyage 271 in February 2011. This is a long-term monitoring line conducted off the coast of Elands/St Helena Bay on the west coast of South Africa. SHBML started in 2000 as a BENEFIT-driven project on "shipboard monitoring" which linked with similar lines run in Namibia and Angola. The aims were to obtain seasonal and interannual information on the hydrology and productivity of the area. It was incorporated under the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) in 2013 consolidating a long-term, multi-decadal time-series (from 1951 onward) of information for this important region and has continued monitoring in the form of the IEP:SB. The programme is a multi-disciplinary, collaborative and capacity building platform undertaking relevant science, including updating technology, with the aim to develop ecosystem indicators that can be used to effectively monitor and understand the Southern Benguela. These include physical, chemical, planktonic, microbial, seabird, marine mammal, benthic and pollution (plastic) ecosystem indicators as required by ecosystem-based management regarding the following priorities: ocean warming, ocean acidification, trophic functioning, pollution and water quality. It is on-going monitoring programme.
DOI: 10.15493/dea.mims.605209
title: Analysed primary production data from the 2017 Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruises

description: Analysed Particulate Organic Matter data, Nutrient data and Nitrate isotope data from the 2017 Integrated Ecosystem Programme: Southern Benguela (IEP:SB) cruises conducted in February, May, August and November. IEP:SB focuses on the biologically productive, cold waters of the Benguela Current Large Marine Ecosystem, which are inherently variable on short time-scales and responsive to changing weather patterms. The research aims to provide relevant, reliable and improved assessment of the ecosystem, in support of its effective management, preservation and conservation, so that South Africans can benefit from a healthy and well-functioning ocean environment. The overarching objective is to enhance understanding in process studies by assessing the importance, timing and magnitude of mechanisms and processes that influence the Southern Benguela ecosystem structure and functioning, including the climate variability.
DOI: 10.15493/dea.mims.26052213
title: Sardine, Hake, and Anchovy Recruitment Programme (SHARP) / St. Helena Bay Monitoring Line (SHBML) on the Africana Voyage 280, February 2012

description: At the intiation of the original SARP project the operational objective was to investigate variability in the transport of clupeoid eggs and larvae by the Benguela jet current from the south coast spawning grounds to the west coast nursery area as this would impact recruitment, thereby influencing the abundance of pelagic resources. To date 17 years worth of data have been collected on a transect perpendicular to the coast off Slangkop, the SARP line. Many valuable conclusions have been drawn using the information. Though the SARP line has contributed to its initial goal, the wealth of data and knowledge accumulated over the years suggests it is time for a revamp and extension of the SARP line. The idea is to strengthen the sampling strategy to include a more comprehensive experimental design that not only targets clupeoid eggs and larvae but also the early life stages of another highly valuable fisheries-targeted resource, the Cape hakes (Marluccius capensis and M. Paradoxus), and as a result this monitoring programme will now be referred to as SHARP.
DOI: 10.15493/dea.mims.26000003
title: St Helena Bay Monitoring Line (SHBML) on the Africana Voyage 234, July 2007

description: This St Helena Bay Monitoring Line (SHBML) cruise was conducted on the Africana Voyage 234 in July 2007. This is a long-term monitoring line conducted off the coast of Elands/St Helena Bay on the west coast of South Africa. SHBML started in 2000 as a BENEFIT-driven project on "shipboard monitoring" which linked with similar lines run in Namibia and Angola. The aims were to obtain seasonal and interannual information on the hydrology and productivity of the area. It was incorporated under the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) in 2013 consolidating a long-term, multi-decadal time-series (from 1951 onward) of information for this important region and has continued monitoring in the form of the IEP:SB. The programme is a multi-disciplinary, collaborative and capacity building platform undertaking relevant science, including updating technology, with the aim to develop ecosystem indicators that can be used to effectively monitor and understand the Southern Benguela. These include physical, chemical, planktonic, microbial, seabird, marine mammal, benthic and pollution (plastic) ecosystem indicators as required by ecosystem-based management regarding the following priorities: ocean warming, ocean acidification, trophic functioning, pollution and water quality. It is on-going monitoring programme.
DOI: 10.15493/dea.mims.26500000
title: St Helena Bay Monitoring Line (SHBML) on the Africana Voyage 269, January 2011

description: This St Helena Bay Monitoring Line (SHBML) cruise was conducted on the Africana Voyage 269 in January 2011. This is a long-term monitoring line conducted off the coast of Elands/St Helena Bay on the west coast of South Africa. SHBML started in 2000 as a BENEFIT-driven project on "shipboard monitoring" which linked with similar lines run in Namibia and Angola. The aims were to obtain seasonal and interannual information on the hydrology and productivity of the area. It was incorporated under the Integrated Ecosystem Programme: Southern Benguela (IEP:SB) in 2013 consolidating a long-term, multi-decadal time-series (from 1951 onward) of information for this important region and has continued monitoring in the form of the IEP:SB. The programme is a multi-disciplinary, collaborative and capacity building platform undertaking relevant science, including updating technology, with the aim to develop ecosystem indicators that can be used to effectively monitor and understand the Southern Benguela. These include physical, chemical, planktonic, microbial, seabird, marine mammal, benthic and pollution (plastic) ecosystem indicators as required by ecosystem-based management regarding the following priorities: ocean warming, ocean acidification, trophic functioning, pollution and water quality. It is on-going monitoring programme.