cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12512963.v1
title: Soluble urokinase plasminogen activator receptor as a long-term prognostic biomarker in acute coronary syndromes

description: <b>Purpose:</b> The aim of our study was to analyse the long-term prognostic value of soluble urokinase plasminogen activator receptor (suPAR) in the setting of an acute coronary syndrome (ACS). <b>Methods:</b> We included 340 patients with an ACS who underwent coronary angiography and plasma suPAR concentration was measured. Patients were classified into low suPAR concentrations (&lt;2.6 ng/mL) and high suPAR concentrations (≥2.6 ng/mL) and long-term events were evaluated. suPAR prognostic value was assessed beyond a clinical model that included age, GRACE score, estimated glomerular filtration rate, cardiac troponin-I peak and left ventricular ejection fraction &lt;40%. <b>Results:</b> Higher suPAR concentrations were associated with an increased prevalence of cardiovascular risk factors. After multivariate adjustment, suPAR ≥2.6 ng/mL were independently associated with an increased risk of all-cause death (HR 2.3; 95%CI 1.2–4.4; <i>p</i> = .017), major adverse cardiovascular events (MACE) (HR 1.7; 95%CI 1.1–2.5; <i>p</i> = .020) and heart failure (HR 4.1; 95%CI 1.3–12.6; <i>p</i> = .015), but not with myocardial infarction. For long-term all-cause death significant improvement of reclassification and discrimination were seen after addition of suPAR to a clinical model. <b>Conclusions:</b> In the setting of an ACS, suPAR is associated with long-term all-cause death, heart failure and MACE, and provides incremental prognostic value beyond traditional risks factors.
DOI: 10.6084/m9.figshare.22582219.v1
title: Data NEP-NEC-PAR.xlsx

description: Hourly raw data of PAR, Net Ecosystem Production (NEP) and Net ecosystem calcification (NEC) for 2018 and 2022
DOI: 10.6084/m9.figshare.21754205.v2
title: vitaceae_data

description: code and data from a paper
DOI: 10.6084/m9.figshare.5241673.v1
title: Erratum: Lipopolysaccharide-Induced Sickness Behavior in Lactating Rats Decreases Ultrasonic Vocalizations and Exacerbates Immune System Activity in Male Offspring

description: <b><i>Objective:</i></b> The present study analyzed the effects of lipopolysaccharide (LPS) on maternal behavior during lactation and possible correlations with changes in emotional and immune responses in offspring. <b><i>Methods:</i></b> Lactating rats received 100 μg/kg LPS, and the control group received saline solution on lactation day (LD) 3. Maternal general activity and maternal behavior were observed on LD5 (i.e. the day that the peak of fever occurred). In male pups, hematological parameters and ultrasonic vocalizations (USVs) were assessed on LD5. At weaning, an additional dose of LPS (50 µg/kg, i.p.) was administered in male pups, and open-field behavior, oxidative burst and phagocytosis were evaluated.<b><i> Results: </i></b>A reduction in the time in which dams retrieved the pups was observed, whereas no effects on maternal aggressive behavior were found. On LD5, a reduction of the frequency of USVs was observed in pups, but no signs of inflammation were found. At weaning, an increase in immune system activity was observed, but no differences in open-field behavior were found. <b><i>Conclusion:</i></b> These results indicate that inflammation in lactating mothers disrupted mother/pup interactions and may have produced short- and long-term effects on pup behavior as well as biological pathways that modulate inflammatory responses to bacterial endotoxin challenge in pups.
DOI: 10.17632/48xybsmvpv
title: Mexican Sign Language's Dactylology and Ten First Numbers -Raw videos. From person #1 to #3

description: The following data set has 10 raw recordings of 3 people each (People were anonymously classified from person 1 to 3) performing Sign Language and the First Ten Numbers of Mexican Sign Language. It is worth mentioning that, for each person, 5 recordings were made with the right hand and 5 with the left hand.
DOI: 10.17632/g58v8tb8sd
title: Are the Effects of Uncertainty Shocks Big or Small?

description: Replication files for "Are the Effects of Uncertainty Shocks Big or Small?" published by the European Economic Review (2023)
DOI: 10.6084/m9.figshare.21151570.v1
title: mormyrops_boulengeri_zanfona_1.fasta.gz

description: .....
DOI: 10.6084/m9.figshare.5125978.v1
title: Supplementary Material for: Swiss Quality and Outcomes Framework: Quality Indicators for Diabetes Management in Swiss Primary Care Based on Electronic Medical Records

description: <b><i>Background:</i></b> Most industrialized countries are faced with a growing population of patients with chronic diseases and multimorbidity. Evidence performance gaps have been recognized in the treatment of this vulnerable patient group. In England, the Quality and Outcomes Framework (QOF) - based on incentivized quality indicators - has been established to narrow the gap. <b><i>Objective:</i></b> We evaluated to what extent clinical data, extracted from electronic medical records (EMRs) of Swiss general practitioners, can be used as quality indicators in terms of a Swiss Quality and Outcomes Framework (SQOF) for diabetes care adopted from the QOF of the UK National Health Service (NHS). <b><i>Methods:</i></b> We searched the FIRE database (Family Medicine ICPC Research Using Electronic Medical Records) for patients suffering from diabetes type 1 or type 2. Eligible data were matched with the diabetes indicator set of the NHS QOF and compared with the results in England. <b><i>Results:</i></b> A total of 11 out of 17 diabetes indicators could be adopted for the SQOF; 46 practices with 1,781 diabetes patients were included. The practices fulfilled the SQOF diabetes indicator set with 46.9% overall, with highest compliance for blood pressure measurements (97.8% of all practices) and lowest compliance for influenza immunization (45.7%). Our study practices showed higher variation across all indicators and between practices compared to England, but lacking structured data limited calculation of scores and comparability. <b><i>Conclusions:</i></b> Our results show that it is technically feasible to establish a diabetes QOF in Swiss primary care based on EMRs. However, a high amount of missing data made it impossible to evaluate the actual quality of care. For a nationwide introduction, standards for electronic medical documentation and EMR use need to be set. It should also be acknowledged that important dimensions of suffering from one or more chronic diseases such as health-related quality of life are not reflected within a system focusing only on somatic aspects of a disease.
DOI: 10.6084/m9.figshare.20069921.v1
title: GRDC - CCDM/CIC genomic prediction report

description: <strong> S1Data-simulated.tar.gz </strong>- These are simulated data evaluating prediction accuracy for different traits, number of markers, numbers of samples on different testing scenarios. <br> <br> Other files are example results of the SelectML methods. These are the combined results of the optimise and predict scripts. The compressed folders are named by the simulated dataset that they correspond to and the model. <br> The trait is first (e.g. A1 means an additive trait with 1 causal marker), N1000 means 1000 samples (in the training population), M1000 means 1000 markers sampled, "_CAUSAL" means that the causal loci were included in the sampled markers (note that this means for M1000 all markers sampled did have a genuine effect), and the final section before ".tar.gz" indicates the model used (e.g. sgd, xgb, BGLR). <br> Inside each of these compressed folders are the following files. From the `selectml optimise` command: <br> <strong>regression_*_best.json </strong>- the best performing combination of hyper parameters for these data and model type. <strong>regression_*_results.tsv </strong>- The optuna running logs showing sampled parameters and average mean squared error (of cross validated samples) of models from that parameter set. <strong>regression_*_full_results.tsv</strong> - Like _results.tsv but includes other statistics relevant to the task, such as pearsons correlation. <br> And from `selectml predict`: <strong>regression_*_model.pkl </strong>- a stored version of the trained model given the best parameters from optimise, trained from the complete train dataset. <strong>regression_*_predictions.tsv </strong>- predicted results for all training datasets. <strong>regression_*_stats.tsv </strong>- summary statistics (e.g. MSE, pearsons correlation) for the model in different test populations.
DOI: 10.6084/m9.figshare.28680176.v1
title: <i>Measurements for a</i><i>grivoltaics sites</i>

description: <i>Dataset measurements from two agrivoltaic sites, Solar Farm 2.0 in Champaign, Illinois, and </i><i>Jack’s Solar Garden in Longmont, Colorado, are available.</i>
DOI: 10.17632/c7jhvd7g9p
title: How precise is quantitative prediction of drug-drug interactions

description: How precise is quantitative prediction of drug-drug interactions and genotype from in vitro data: A comprehensive analysis on the example CYP2D6 and CYP2C19 substrates -Supplementary material
DOI: 10.6084/m9.figshare.28782278.v1
title: Insights from Obtaining Test Data in the Estonian e-Government System: Practice, Experience, and Improvement Potential

description: Interview study design, questions, interview reports, and data extraction sheet.
DOI: 10.6084/m9.figshare.26014813.v1
title: Supplementary Material for: Electrical and Magnetic Neuromodulation Technologies and Brain-Computer Interfaces: Ethical Considerations for enhancement of brain function in healthy people – a systematic scoping review

description: Introduction: This scoping review aims to synthesize the fragmented evidence on ethical concerns related to the use of electrical and magnetic neuromodulation technologies, as well as Brain-Computer Interfaces for enhancing brain function in healthy individuals, addressing the gaps in understanding spurred by rapid technological advancements and ongoing ethical debates.

Methods: The following databases and interfaces were queried: Medline (via PubMed), Web of Science, Phil Papers and Google Scholar. Additional references were identified via bibliographies of included citations. References included experimental studies, reviews, opinion papers, and letters to editors published in peer-reviewed journals that explored the ethical implications of electrical and magnetic neuromodulation technologies and brain-computer interfaces for enhancement of brain function in healthy adult or pediatric populations. 

Results: A total of 23 articles were included in the review, of which the majority explored expert opinions in the form of qualitative studies or surveys as well as reviews. Two studies explored the view of lay persons on the topic. The majority of evidence pointed to ethical concerns relating to a lack of sufficient efficacy and safety data for these new technologies, with the risks of invasive procedures potentially outweighing the benefits. Additionally, concerns about potential socioeconomic consequences were raised that could further exacerbate existing socioeconomic inequalities, as well as the risk of changes to person and environment.

Conclusion: This scoping review highlights a critical shortage of ethical research on electrical and magnetic neuromodulation technologies and brain-computer interfaces for enhancement of brain function in healthy individuals, with key concerns regarding the safety, efficacy, and socio-economic impacts of neuromodulation technologies. It underscores the urgent need for integrating ethical considerations into neuroscientific research to address significant gaps and ensure equitable access and outcomes.
DOI: 10.6084/m9.figshare.28328432.v1
title: Gene prediction on HapB

description: Gene prediction on HapB
DOI: 10.6084/m9.figshare.12652100.v4
title: Global surface ocean pCO2 from CSIR-ML6 (2020)

description: An update to the original CSIR-ML6 method. The following changes have been made: SOCATv2020 is used; ERA5 wind data and MSLP are used (instead of ERA interim).<br><b>spco2</b> = surface pCO2 for the ensemble average<b>spco2_ensemble</b> = individual ensemble members of spco2<b>fgco2</b> = air-sea CO2 fluxes <b>area_mask</b> = the area per pixel - doubles as mask for the data<br>Please cite the dataset as well as the original publication (https://doi.org/10.5194/gmd-12-5113-2019).
DOI: 10.6084/m9.figshare.23982888.v1
title: Table 3 data

description: <br><b>• Background and Aims </b>Freshwater nitrogen inputs are increasing globally, altering the structure and function of wetland ecosystems adapted to low nutrient conditions. Carnivorous wetland plants of the genus <i>Utricularia </i>are hypothesized to reduce their reliance on carnivory and increase their assimilation of environmental nutrients when the supply of ambient nutrients increases. Despite success in using stable isotope approaches to quantify carnivory of terrestrial carnivorous plants, quantifying carnivory of aquatic <i>Utricularia </i>requires improvement.<b>• Methods </b>We developed stable isotope mixing models to quantify aquatic plant carnivory and used these models to measure dietary changes of three <i>Utricularia </i>species, <i>Utricularia australis</i>, <i>U. gibba </i>and <i>U. uliginosa</i>, in 11 wetlands across a 794-km gradient in eastern Australia. Diet was assessed using multiple models that compared variations in the natural-abundance nitrogen isotope composition (δ15N) of <i>Utricularia </i>spp. with that of non-carnivorous plants, and environmental and carnivorous nitrogen sources.<b>• Key Results </b>Carnivory supplied 40–100 % of plant nitrogen. The lowest carnivory rates coincided with the highest availability of ammonium and dissolved organic carbon.<b>• Conclusions </b>Our findings suggest that <i>Utricularia </i>populations may adapt to high nutrient environments by shifting away from energetically costly carnivory. This has implications for species conservation as anthropogenic impacts continue to affect global wetland ecosystems.
DOI: 10.6084/m9.figshare.25826887.v1
title: 基因组注释文件gff

description: <b>软体动物密码子使用偏倚模式分析</b>
DOI: 10.6084/m9.figshare.19119041.v4
title: Genotypic matrix for studying the cashew population structure and genetic diversity in East-Timor

description: Our study focuses on the assessment of the genetic diversity of cashew populations cultivated in East-Timor using highly informative molecular markers as microsatellites, which are effective in evaluating intra-specific genetic diversity along the evaluation of the population structuring. To accomplish such objective, eleven cashew orchards from East-Timor were assessed with 16 cashew-specific microsatellites applied to screen in-country genetic diversity. Besides an Indonesian population were included as an outgroup, to assess any East-Timor genetic signature; along with two populations from Mozambique, so it could work as a continental outgroup to detect any gene flow between continental-to-island gene flow.Our work is pioneer as no studies have been conducted in East-Timor using a highly comprehensive sampling scheme (over 11 populations) in an emerging cash crop, as cashew. This is particularly important as East-Timor aims to invest in the cashew nut exports by contending directly with competitive countries, as India and Vietnam in the surrounding region. In fact, evaluation and assessing genetic diversity will allow to detect the presence of any East-Timor genetic signature that will acknowledge the valorization of cashew nuts from the country, and prospect agrobiodiversity hotspots in the country, for future cashew germplasm programs.This data involves the genotype matrix generated under this work and used for performing genetic diversity and population structure analyses.<br>
DOI: 10.5281/zenodo.15309446
title: MA-lea-zar
DOI: 10.5281/zenodo.15309447
title: MA-lea-zar
DOI: 10.6084/m9.figshare.10086599.v1
title: MOESM5 of Diverse cell junctions with unique molecular composition in tissues of a sponge (Porifera)

description: Additional file 5. EmITGB1 coIP results
DOI: 10.6084/m9.figshare.28736939.v1
title: Pre-Survey (Responses).xlsx

description: <b>Assessing Smartphone Usage Patterns and Intervention Preferences Across Different Age Groups: A Cross-Sectional Study in Coimbatore, India</b>
DOI: 10.6084/m9.figshare.3546150.v1
title: Flip a coin

description: Coin flip experiment
DOI: 10.17632/6sxcdvzn4d
title: Fluid Interaction Study: Hydrodynamic Robot (FISHR) -Expansion of Bioinspired Soft Robotic Fish

description: We introduce an enhanced iteration of OpenFish, an open-source soft robotic fish previously developed. The original model, developed at Delft of Technology, successfully emulated thunniform swimming through a unique propulsion system utilizing both active and passive tail segments. This design aimed to optimize speed and efficiency while fostering future advancements in soft robotic fish research. To further enhance OpenFish, we undertook a redesign process, making modifications to the fish hull and internal components. These changes aimed to simplify construction, address waterproofing issues, and facilitate the development of an autonomous version of the fish. Our work encompasses an updated description of the construction process, customization options, and detailed insights into hardware implementation, including waterproofing techniques for the soft robotic fish.
DOI: 10.6084/m9.figshare.21498720.v5
title: ESA-Data.xlsx

description: Contains biomass and species number data from 7 years of grazing, mowing and fencing in semi-arid grasslands.
DOI: 10.6084/m9.figshare.25956016.v1
title: Supplementary Material for: Potential correlation between tea intake and the risk of amyotrophic Lateral Sclerosis: A Mendelian randomization study

description: Introduction: There were limited observation studies on the association between tea intake and amyotrophic lateral sclerosis (ALS) with inconsistent results. This study aimed to determine the potential relationship between tea intake and ALS by a two-sample Mendelian randomization (MR) analysis.
Methods: We identified 41 independent SNPs strongly associated with tea intake from 448,060 participants of European ancestry in the UK Biobank. Summary statistics associated with ALS were also obtained from the UK Biobank including 20,806 cases and 59,804 controls. The study used MR analysis to assess the potential effect of tea consumption on ALS, and several methods such as sensitivity analyses and MR-pleiotropy residual sum and outlier (MR-PRESSO) method were performed to further test the robustness of our findings.
Results: The F statistic was more than 10 in each SNP, which meets the first assumption for the MR study. Using the Inverse variance weighted (IVW) MR analysis as the primary method, we found that a one standard deviation increase in tea consumption was associated with a 14% lower risk of ALS (OR=0.86, 95%CI=0.74-0.99, P＜0.05). Sensitivity analyses detected no potential pleiotropy and directional heterogeneity.
Conclusion: Our MR study supported the potential relationship between tea intake and ALS risk, suggesting the potential advantages of tea intake for preventing ALS. Future clinical trials and research are needed to further validate the results and elucidate possible mechanisms.
DOI: 10.6084/m9.figshare.7930022.v1
title: gVCF_HG02419

description: 1000 Genomes gVCF mapped to hs37d5 for HG02419. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.15104292.v1
title: Huang et al WRR Supplementary Information Dataset.xlsx

description: Hourly flood discharge data of four hydrological stations at the Le'an river basin, China.
DOI: 10.6084/m9.figshare.28713239.v4
title: Sleep deprivation and Gut Microbiome--Peer J.

description: The study was conducted to investigate the impact of sleep deprivation on altering the puberty onset in juvenile Sprague-Dawley (SD) rats. Four pregnant SD rats were purchased from BioLASCO Taiwan Co. Ltd, and they were housed at the Laboratory Animal Center at Taipei Medical University in a controlled environment (12-hour light-dark cycle, 22–24°C, 40%–60% humidity). The juvenile SD rats were weaned and grouped at postnatal day 21 (PND 21). Then, they were randomly assigned to Control Female (CF) (n=6), Sleep-Deprivation Female (SDF) (n=6), Control Male (CM) (n=6), and Sleep-Deprivation Male (SDM) (n=6) groups, totally 24 rats. We ensured their body weight and sex were balanced across groups. They were subjected to 15 hours of sleep deprivation per day for 4 weeks after weaning. Sleep deprivation is a highly stressful condition; therefore, the body weights of rats were monitored every other day, and all rats survived until euthanization. The rats were euthanized by using cardiac puncture after 4 weeks of sleep deprivation, and blood samples and tissues were collected and stored in the -80 ℃ refrigerator until used.<b>Gut microbiome composition</b>Fecal samples were collected at vaginal opening days (PND 30~PND 40) from female rats and were collected at preputial separation days (PND 39~PND 49) from male rats during the experiment. In brief, collected fecal samples were transferred immediately to cold storage and remained stored at 80°C until processing near days of vaginal opening. Fecal genomic DNA was extracted using the QIAamp DNA Stool Mini Kit (cat. no. 51504, QIAGEN, Denmark) according to the manufacturer’s instructions, stored at -80°C, and underwent processing including polymerase chain reaction (PCR) assays and 16S rRNA sequencing. The Pacbio sequencing for full-length 16S genes (V1-V9 regions) was performed. The full-length 16S genes was amplified using barcoded 16S gene-specific primers. Subsequently, the PCR reaction was carried out by KAPA HiFi HotStart ReadyMix (Roche), and its products were purified using the AMPure PB Beads for SMRTbell library construction and sequencing processes. Consequently, multiple sequence alignment was performed by QIIME2 alignment MAFFT against the NCBI database to analyze the sequence similarities among the amplicon sequence variants (ASVs).<br>
DOI: 10.60893/figshare.apl.26003806.v1
title: Femtotesla all-optical dual-axis spin-exchange relaxation-free magnetometer

description: See the supplementary material for the complete derivation of the analytical expression.
DOI: 10.6084/m9.figshare.13615358.v1
title: Table

description: The data of the intentional binding effect and error.
DOI: 10.6084/m9.figshare.14555175.v1
title: Code for Fig 1B from Interventions targeting non-symptomatic cases can be important to prevent local outbreaks: SARS-CoV-2 as a case study

description: The MATLAB code used to generate Fig 1B in the main text