cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.856488.1
title: Velocity observations from a mooring at Station AT55 in Lake Michigan from 2017-08-01 to 2017-08-16.

description: A fixed mooring was established to measure water column velocities in Lake Michigan near Milwaukee (12 km northeast of Milwaukee Harbor), WI, during 2017 from Aug 1 – Aug 17, 2017 at a 55m depth site. The mooring involved a large tripod, upon which three velocimeters (Nortek Vector, Nortek Aquadopp HR profiler, Nortek Signature 500) were mounted to measure water column velocities between 13cm and 5139cm above the bed.
DOI: 10.26008/1912/bco-dmo.674407.1
title: Dominant microbe taxa from Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project)

description: This dataset contains microbial orders that rose to dominate at least one sample. Values quantify the number of samples in which each order was the most abundant, as well as average metadata values for the samples in which that order became most abundant. Metadata values calculated are temperature, overall community evenness, the cover of all upright algae, tall turf algae, or cyanobacteria, and the average abundance of the dominant taxon. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 3f.
DOI: 10.26008/1912/bco-dmo.858180.1
title: Photosynthesis and respiration data recorded during experiments conducted to examine two coral species' responses to thermal stress

description: This dataset includes photosynthesis and respiration data recorded during experiments conducted to examine two coral species' responses to thermal stress. Species examined were Acropora hemprichii and Porites lobata. Experiments were performed in Thuwal, Saudi Arabia in July-August 2019.
DOI: 10.26008/1912/bco-dmo.858081.1
title: Temperature data measured during two experiments testing the effects of acute and chronic thermal stress on the scleractinian coral, Stylophora pistillata

description: This dataset includes temperature data (in degrees Celsius) measured during two experiments: an 18 h acute thermal stress assay using the Coral Bleaching Automated Stress System (CBASS) and a 14 day chronic heat stress experiment using the Red Sea Simulator (RSS). Experiments were performed in Eilat, Israel in January-February 2019.
DOI: 10.26008/1912/bco-dmo.858112.1
title: Maximum potential quantum efficiency of Photosystem II (Fv/Fm) for two coral species, Acropora hemprichii and Porites lobata, in response to thermal stress

description: This dataset contains values of Fv/Fm (maximum potential quantum efficiency of Photosystem II) for two coral species, Acropora hemprichii and Porites lobata, in response to thermal stress. Experiments were performed in Thuwal, Saudi Arabia in July-August 2019.
DOI: 10.26008/1912/bco-dmo.858150.1
title: Physiological metrics recorded at the end of experiments conducted to examine two coral species' responses to thermal stress

description: This dataset includes physiological response metrics recorded at the end of experiments conducted to examine two coral species' responses to thermal stress. Species examined were Acropora hemprichii and Porites lobata. Experiments were performed in Thuwal, Saudi Arabia in July-August 2019.
DOI: 10.26008/1912/bco-dmo.857017.1
title: Summary metrics of light and temperature at multiple sites and depths on the fore reef of Moorea, French Polynesia from 2005 to 2019

description: This dataset includes summary metrics of light and temperature at multiple sites and depths on the fore reef of Moorea, French Polynesia from 2005 to 2019. These data are published in Figures 1 and 4 of Johnston et al., 2021 (doi: 10.1007/s00338-021-02107-9).
DOI: 10.26008/1912/bco-dmo.857058.1
title: mtORF haplotype of each Pocillopora colony sampled at a given site and depth at Moorea, French Polynesia in August 2019

description: This dataset reports the mtORF haplotype of each Pocillopora colony sampled at a given site and depth at Moorea in August 2019. These data are published in Figures 2, 3, and 4 of Johnston et al., 2021 (doi: 10.1007/s00338-021-02107-9). The attached Supplemental File &quot;Pocillopora_mtORF.fasta&quot; contains the mtORF haplotype sequence (855bp) for each coral colony as identified by the 'Tube_ID' column.
DOI: 10.26008/1912/bco-dmo.858036.1
title: Physiological responses of the coral host and associated endosymbionts measured during two experiments testing the effects of acute and chronic thermal stress on the scleractinian coral, Stylophora pistillata

description: This dataset describes physiological responses of the coral host and associated endosymbionts measured at the end of the heating hold period and after a recovery period during experiments conducted to test the effects of acute (18 h) and chronic (14 d) thermal stress on the scleractinian coral, Stylophora pistillata. Experiments were conducted in Eilat, Israel in January-February 2019. Methods and results are published in Evensen et al., 2021 (doi: 10.1002/lno.11715).
DOI: 10.26008/1912/bco-dmo.670858.1
title: Blacktip shark acceleration and oxygen consumption (Shark Metabolic Rate project)

description: Respirometry experiments were conducted on juvenile nurse, lemon, and blacktip sharks captured in Florida and transported to Mote Marine Laboratory. Collected data captures shark weight, shark length, shark sex, tank temperature, oxygen consumption, and overall dynamic body acceleration (see parameters for all captured data points).
DOI: 10.26008/1912/bco-dmo.674390.1
title: Microbial sample metadata for water samples used in SourceTracker analysis, 2009-2012

description: This dataset contains microbial sample metadata for water samples used in SourceTracker analysis, from Pickles Reef, Florida Keys National Marine Sanctuary from August of 2011 and 2012. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2d.
DOI: 10.26008/1912/bco-dmo.832995.1
title: Natural abundance N2O isotopomers measured from seawater samples collected in the Eastern Tropical North Pacific during R/V Sally Ride (SR1805) cruise from March to April 2018

description: Seawater samples for dissolved nitrate, nitrite, and nitrous oxide were collected from CTD casts during R/V Sally Ride 1805 cruise (March/April 2018) in the Eastern Tropical North Pacific oxygen minimum zone.
DOI: 10.26008/1912/27422
title: Hollow Core Fiber Methane Sensor

description: We have developed a hollow core fiber optic sensor capable of measuring dissolved methane gas in liquids using only nanoliters of sample gas. The sensor is based on an anti-resonant hollow core fiber combined with a permeable capillary membrane inlet which extracts gas from the liquid for analysis.
DOI: 10.26008/1912/bco-dmo.674449.2
title: Relative abundance of phyla from Florida Keys National Marine Sanctuary, 2009-2013

description: This dataset contains relative abundance data of phyla for the study plots at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2013. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2c.
DOI: 10.26008/1912/bco-dmo.726353.1
title: The influence of structural refuge, competition and their interaction on the early post-settlement survival of transplanted Thalassoma hardwicke (the sixbar wrasse) in Moorea, French Polynesia from 2005-2007 (CDD_in_Reef_Fish project)

description: The influence of structural refuge, competition and their interaction on the early post-settlement survival of transplanted Thalassoma hardwicke (the sixbar wrasse) in Moorea, French Polynesia from 2005-2007. This data was collected as a part of the Cryptic density dependence: the effects of spatial, ontogenetic, and individual variation in reef fish project.
DOI: 10.26008/1912/bco-dmo.674321.2
title: Microbial sample metadata, sequencing and treatment details, temperature and salinity at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2012

description: This dataset contains microbial sample metadata for the study plots including sequencing and treatment details, HCOM temperature and salinity data. The experimental site was in the Florida Keys National Marine Sanctuary from 2009 to 2012. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2c.
DOI: 10.26008/1912/bco-dmo.674439.2
title: Parrotfish bite annotations from Florida Keys National Marine Sanctuary, 2009-2013

description: This dataset contains parrotfish bite observations for the study plots at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2013. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2c.
DOI: 10.26008/1912/bco-dmo.674368.2
title: Benthic community composition at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2013

description: This dataset contains benthic community composition data for the study plots at Pickles Reef, Florida Keys National Marine Sanctuary from 2009-2013. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 2c.
DOI: 10.26008/1912/bco-dmo.674416.1
title: Coral mortality and tissue loss from experiments at Pickles Reef, Florida Keys National Marine Sanctuary, 2009-2012 (HERBVRE project)

description: This dataset contains data on coral mortality and tissue loss during enclosure experiments at Pickles Reef, Florida Keys National Marine Sanctuary. Published in Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 5a.
DOI: 10.26008/1912/bco-dmo.639509.1
title: Algal cover from herbivore exclusion and nutrient enrichment experiments conducted in the Florida Keys National Marine Sanctuary during 2009-2012

description: This dataset contains summary percent cover data for algal species and other encrusting invertebrates found in the study plots in the Florida Keys National Marine Sanctuary during 2009-2012.
DOI: 10.26008/1912/bco-dmo.639563.1
title: Water column nutrients for ambient nutrient conditions from Pickles Reef in Upper Florida Keys, 2009-2012 (HERBVRE project)

description: This dataset contains summary percent cover data for algal species and other encrusting invertebrates found in the study plots.
DOI: 10.26008/1912/bco-dmo.674398.1
title: Microbial orders comprising the core microbiome across all samples as measured by taxa prevalence, 2009-2012 (HERBVRE project)

description: This dataset contains microbial orders comprising the core microbiome across all samples as measured by taxa prevalence, from Florida Keys National Marine Sanctuary. Cyanobacteria, Bacteroidetes and Actinobacteria were most abundant in all coral genera, with a core set of 13 bacterial orders in ≥95% of all samples. Published in  Nature Communications (2016) doi:10.1038/ncomms11833, Supplementary Data 3a.
DOI: 10.26008/1912/bco-dmo.639480.1
title: Algal species ID from herbivore exclusion and nutrient enrichment experiments conducted in the Florida Keys National Marine Sanctuary during 2009-2012 (HERBVRE project)

description: This dataset contains percent cover data for algal species and other encrusting invertebrates found in the study plots.
DOI: 10.26008/1912/bco-dmo.739708.1
title: Environmental and biological conditions from R/V Porsild characterizing Disko Bay, Greenland in April-May 2011

description: Environmental and biological conditions from R/V Porsild characterizing Disko Bay, Greenland in April-May 2011.
DOI: 10.26008/1912/bco-dmo.827969.1
title: CTD data collected on three NSF RAPID Plankton cruises on R/V Point Sur and R/V Pelican in the Gulf of Mexico during 2017-2018

description: This dataset includes processed CTD data collected during three NSF RAPID Plankton cruises. RAPID Plankton Cruise 1 took place on R/V Point Sur, cruise number PS1813, from October 28-November 3, 2017. RAPID Plankton Cruise 2 took place on R/V Pelican, cruise number PE18-18, from January 6- 12, 2018. RAPID Plankton Cruise 3 took place on R/V Pelican, cruise number PE18-21, from March 19- 23, 2018. Data were collected at 10 stations on each cruise.
DOI: 10.26008/1912/bco-dmo.856281.1
title: Seawater lead (Pb) concentrations and isotopic compositions in the Western Philippine Sea (WPS) in March 2014

description: This dataset reports seawater lead (Pb) concentrations and isotopic compositions in the Western Philippine Sea (WPS) from samples collected on R/V Ocean Researcher V, cruise OR5-0035, in March 2014.
DOI: 10.26008/1912/bco-dmo.856943.1
title: Model output (carbonate production and erosion rates) from field data collected in Majuro and Kiritimati in 2019

description: Carbonate production and erosion rates from field data collected in Majuro and Kiritimati in 2019. This dataset includes output of the model run. The input data files and R scripts are included in the supplemental .zip file and from the BCO-DMO Github repository (https://github.com/BCODMO/Pacific/releases/tag/1.0)
DOI: 10.26008/1912/bco-dmo.856134.1
title: Concentrations of metals in total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009

description: This dataset reports concentrations of metals in total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009.
DOI: 10.26008/1912/bco-dmo.856176.1
title: Concentrations of nutrients in total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009

description: This dataset reports concentrations of nutrients in total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009.
DOI: 10.26008/1912/bco-dmo.856219.1
title: Trace metal concentrations of lake water, river water, and groundwater at Lake Tahoe from 2013 to 2016

description: This dataset reports concentrations of trace metals in lake water, river water, and groundwater collected at Lake Tahoe from 2013 to 2016.
DOI: 10.26008/1912/bco-dmo.856001.1
title: Lead (Pb) isotopic ratios in lake water, river water, groundwater, and TSP samples collected in and around Lake Tahoe from 2006 to 2016

description: This dataset reports Lead (Pb) isotopic ratios in lake water, river water, groundwater, and TSP samples collected in and around Lake Tahoe from 2006 to 2016. Total suspended particle (TSP) samples were collected weekly using a Graseby Andersen TSP High Volume Sampler located near the lake at the UC Davis Field Station. Water depth profiles were collected seven times at different seasons between the Spring of 2013 and Summer 2016 using Van Dorn bottles. ). Groundwater samples were obtained from two wells at the Lake Tahoe fire station and three wells at the Hatchery. River water samples were collected from Third Creek, Trout Creek, Upper Truckee River, Ward Creek, Incline Creek, Blackwood Creek and General Creek.
DOI: 10.26008/1912/bco-dmo.856108.1
title: Concentrations of acetate, formate, chloride, sulfate, and oxalate from total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009

description: This dataset reports concentrations of acetate, formate, chloride, sulfate, and oxalate from total suspended particle (TSP) samples collected near Lake Tahoe from 2006 to 2009.
DOI: 10.26008/1912/bco-dmo.723493.1
title: Inventory of fluid and filter samples collected for carbon composition and isotope analysis from R/V Atlantis cruise AT39-01 at the North Pond CORK Sites U1382A and U1383C during October 2017

description: This dataset is an inventory of fluid and filter samples collected for carbon composition and isotope analysis from R/V Atlantis cruise AT39-01 at the North Pond CORK Sites U1382A and U1383C during October 2017.
DOI: 10.26008/1912/bco-dmo.855813.1
title: Seawater Trace Metal Concentrations from China incubation experiment conducted in April 2011

description: This dataset reports trace metal concentrations in seawater from an incubation experiment carried out in China in April 2011.
DOI: 10.26008/1912/bco-dmo.855966.1
title: Major nutrient concentrations in seawater from an incubation experiment carried out in China in April 2011

description: This dataset reports major nutrient concentrations in seawater from an incubation experiment carried out in China in April 2011.
DOI: 10.26008/1912/bco-dmo.813379.2
title: Depth profiles of seawater dissolved 232Th, 230Th, and 231Pa from RVIB Nathaniel B. Palmer cruise NBP1702 from January to March 2017

description: This dataset contains depth profiles of seawater dissolved 232Th, 230Th, and 231Pa from cruise NBP1702 (GEOTRACES-compliant).
DOI: 10.26008/1912/bco-dmo.855750.1
title: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures from samples collected in Guam, California, and Gulf of Mexico between 2008 and 2016

description: Analysis protocols, sample information, code, and datasets associated with the manuscript Structure and long-term stability of the microbiome in diverse diatom cultures.  Sequence data is available from the NCBI SRA archive, BioProject PRJNA706454.
DOI: 10.26008/1912/bco-dmo.855573.1
title: Effect of microplastic ingestion on heterotrophic dinoflagellate ingestion rates

description: Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate ingestion rates. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments.
DOI: 10.26008/1912/bco-dmo.855583.1
title: Effect of microplastic ingestion on heterotrophic dinoflagellate growth rates

description: Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate growth rates. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments.
DOI: 10.26008/1912/bco-dmo.855595.1
title: Effect of microplastic ingestion on heterotrophic dinoflagellate functional responses

description: Data were collected examining the effect of microplastic ingestion on heterotrophic dinoflagellate functional responses. Heterotrophic dinoflagellate species O. marina and Gyrodinium sp. were incubated for 5 days under two conditions: a control, fed only algal prey I. galbana, and a treatment fed algal prey and microplastic particles. Samples were taken every 24 hours, with abundances of dinoflagellates, algal prey, and microplastics measured with a Beckman Coulter Counter and verified via microscopy. Ingestion rates were measured and compared between treatments.
DOI: 10.26008/1912/bco-dmo.855395.1
title: Abundances of copepod species in each net from MOCNESS tows in the Eastern Tropical North Pacific collected on four research cruises from 2007-2017

description: This dataset includes abundances of copepod species in each net from MOCNESS tows in the Eastern Tropical North Pacific collected on four research cruises (KN195-02, OC1604B, SJ07, and SKQ201701S) from 2007-2017. Data are from vertically-stratified MOCNESS tows (8 or 9 nets per tow) through and within the Oxygen Minimum Zone (OMZ). Tows sampled various depth ranges between 1200 m to the surface and included paired day and night tows for many strata. Abundances for each species were calculated for each net after accounting for split size and volume filtered and are reported as numbers per 1000 cubic meters of water filtered.
DOI: 10.26008/1912/bco-dmo.856391.1
title: Estimates of bleaching severity and colony size for Pocillopora spp. corals at Moorea in 2019

description: This dataset includes estimates of bleaching severity and colony size for Pocillopora spp. corals at Moorea in 2019. These data have been published in Figure 3 of Burgess et al. (2021).
DOI: 10.26008/1912/bco-dmo.856424.1
title: Estimates of bleaching mortality and colony size for different Pocillopora haplotypes at Moorea in 2019

description: This dataset includes estimates of bleaching mortality and colony size for different Pocillopora haplotypes at Moorea in 2019. These data have been published in Figure 5, Figure 6, and Table 1 of Burgess et al. (2021).
DOI: 10.26008/1912/bco-dmo.726693.1
title: Field assay experiment data to determine if the presence of larger individuals of T. hardwicke adversely affects the survival of focal individuals in Moorea, French Polynesia from 2005-2007 (CDD_in_Reef_Fish project)

description: This dataset is from a study examining the influence of structural refuge, competition and their interaction on the early post-settlement survival of transplanted Thalassoma hardwicke (the sixbar wrasse).
DOI: 10.26008/1912/bco-dmo.856464.1
title: Estimates of bleaching mortality and colony size for Pocillopora spp. corals at Moorea in 2019

description: This dataset includes estimates of bleaching mortality and colony size for Pocillopora spp. corals at Moorea in 2019. These data have been published in Figure 4 of Burgess et al. (2021).
DOI: 10.26008/1912/bco-dmo.726717.1
title: Survey to quantify habitat association for juvenile T. hardwicke in Moorea, French Polynesia from 2005-2007 (CDD_in_Reef_Fish project)

description: This dataset is from a study examining the influence of structural refuge, competition and their interaction on the early post-settlement survival of transplanted Thalassoma hardwicke (the sixbar wrasse).
DOI: 10.26008/1912/bco-dmo.735714.3
title: GPS coordinates of stratified random sampled sites where coral, parrotfish, and urchin surveys were conducted in Palau, Yap, the Federated States of Micronesia, Majuro, and Kiritimati from 2017 to 2019

description: GPS coordinates of stratified random sampled sites where coral, parrotfish, and urchin surveys were conducted in Palau, Yap, the Federated States of Micronesia, Majuro, and Kiritimati from 2017 to 2019.
DOI: 10.26008/1912/bco-dmo.737508.3
title: Transect data of coral species and other substrate types collected in the field using line transects in Palau, Yap, the Federated States of Micronesia, Majuro, and Kiritimati from 2017 to 2019

description: As part of the reef-composition survey of Palau (7°30' N, 134°30' E) and Yap (9°32' N, 138°7' E), 10-meter long, 2 to 5-meter depth transects were conducted. Coral species along the transect were recorded along with substrate types and other organisms present. Surveys in Palau were conducted from June 2nd to June 24th, 2017, and from June 25th to July 6th, 2017 in Yap. 

In Pohnpei (6.2°N, 158.2°E) and Kosrae (5.3°N, 162.9°E) FSM, six 10-meter transects were used to measure the benthic composition for every centimeter, at each site of 48 sites in 2018. Corals were recorded to species level, except massive Porites and encrusting Montipora, which were recorded in the field as growth forms. All other organisms along each transect were identified to the highest possible taxonomic resolution.

In Majuro (7.0667° N, 171.2667° E) and Kiritimati (1.8721° N, 157.4278° W), a stratified random sampling approach was used to survey the reefs in2019. At both locations, the sites were stratified as either (i) outer reefs, or (ii) patch reefs in lagoons. The number of sites sampled per habitat varied according to the area of available habitat at each location. Surveys were focused between 2–5 m.