cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.v67wnh
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((88.89097 24.812449, 88.81361 24.806872, 88.738175 24.790279, 88.666541 24.763084, 88.600486 24.725963, 88.541645 24.679837, 88.491471 24.625852, 88.451194 24.565346, 88.421798 24.499816, 88.403992 24.430884, 88.398196 24.360249, 88.404532 24.289653, 88.422826 24.220832, 88.452609 24.155477, 88.493133 24.095191, 88.54339299999999 24.041449, 88.602149 23.995566, 88.667956 23.958664, 88.739203 23.931643, 88.81415 23.915163, 88.89097 23.909624, 88.96778999999999 23.915163, 89.042737 23.931643, 89.113984 23.958664, 89.17979099999999 23.995566, 89.238547 24.041449, 89.28880700000001 24.095191, 89.329331 24.155477, 89.35911400000001 24.220832, 89.377408 24.289653, 89.38374399999999 24.360249, 89.377948 24.430884, 89.360142 24.499816, 89.330746 24.565346, 89.290469 24.625852, 89.240295 24.679837, 89.181454 24.725963, 89.115399 24.763084, 89.04376499999999 24.790279, 88.96832999999999 24.806872, 88.89097 24.812449))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005817-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xbuaay
title: Occurrence Download

description: A dataset containing 197225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Setophaga cerulea"
 ]
}

 The dataset includes 197225 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005759-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.szs2j5
title: Occurrence Download

description: A dataset containing 45053167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Netta erythrophthalma, Netta peposaca, Netta rufina, Nettapus auritus, Nettapus coromandelianus, Oxyura ferruginea, Oxyura jamaicensis, Oxyura leucocephala, Oxyura vittata, Plectropterus gambensis, Polysticta stelleri, Pteronetta hartlaubii, Radjah radjah, Sarkidiornis melanotos, Sibirionetta formosa, Spatula clypeata, Spatula cyanoptera, Spatula discors, Spatula hottentota, Spatula platalea, Spatula puna, Spatula rhynchotis, Spatula versicolor, Tadorna cana, Tadorna ferruginea, Tadorna tadornoides, Tadorna variegata, Thalassornis leuconotus, Apteryx australis, Apteryx haastii, Buceros bicornis, Bucorvus abyssinicus, Bucorvus leadbeateri, Bycanistes brevis, Tockus deckeni, Casuarius casuarius, Dromaius novaehollandiae, Actophilornis africanus, Aethia cristatella, Burhinus superciliaris, Charadrius dubius, Chionis albus, Chroicocephalus hartlaubii, Chroicocephalus novaehollandiae, Cursorius cursor, Himantopus himantopus, Himantopus mexicanus, Jacana jacana, Limosa limosa, Pluvianus aegyptius, Scolopax minor, Vanellus armatus, Vanellus chilensis, Vanellus miles, Vanellus spinosus, Anastomus lamelligerus, Ciconia ciconia, Ephippiorhynchus senegalensis, Leptoptilos crumenifer, Leptoptilos crumeniferus, Mycteria ibis, Mycteria leucocephala, Colius striatus, Caloenas nicobarica, Chalcophaps indica, Columba livia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45053167 records from 5679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005504-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88qxnc
title: Occurrence Download

description: A dataset containing 2445 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bactrocera dorsalis"
 ]
}

 The dataset includes 2445 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009347-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/w7tx-zm18
title: Long-term project observations for project P1041 semester 2025OCTS_02

description: Omega Cen is the largest globular cluster in the Milky Way. It contains at least 18 known MSPs, and there are solid hints for the presence of an even larger pulsar population. We propose a regular monthly follow-up to refine the timing solutions of the five Parkes discoveries from 2020, and to find timing solutions for the 13 MeerKAT discoveries from 2023, in combination with six MeerKAT observations between 2021 and 2023, and future MeerKAT observations. These timing solutions should enable the detection of derivatives of the spin periods of these pulsars, allowing us to probe the dynamics of Omega Cen and the presence of a possible IMBH at its centre. Timing solutions will also enable the search for X-ray and gamma-ray pulsations in the multiple sources detected in this cluster. This study will allow us to better understand the populations of this globular cluster and its formation history. We request observations until 2030, when we expect to have measurements of the second period derivative of the five brighter discoveries, and first period derivative measurements for the later discoveries. These observations will also contribute to the study of eclipsing binaries, and may include future discoveries from pending searches in MeerKAT data.
DOI: 10.15468/dl.3fkde7
title: Occurrence Download

description: A dataset containing 735796 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ephemeroptera",
 "Year 2010-2025"
 ]
}

 The dataset includes 735796 records from 1116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009313-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/1hfqmi
title: PDB: 1YJD, CD 28 in complex with 5.11A1 antibody (311K, 38°C, 200 ns)

description: Molecular Dynamics Simulations (200 nanoseconds) of human CD28 in complex with the Fab fragment of 5.11A1 antibody at 311K (38°C). Includes PDB files obtained after  0, 50, 100, 150, 200 nanoseconds.
DOI: 10.15468/dl.49vsp9
title: Occurrence Download

description: A dataset containing 3690 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lutjanus vitta",
 "Year 2000-2025"
 ]
}

 The dataset includes 3690 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009348-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy584h
title: Occurrence Download

description: A dataset containing 9309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhabdophis)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9309 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009349-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17720867
title: Question Answering Dataset for Knowledge Graph
DOI: 10.5281/zenodo.17720868
title: Question Answering Dataset for Knowledge Graph
DOI: 10.15468/dl.ehxxza
title: Occurrence Download

description: A dataset containing 12344 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 12344 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009351-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8d6yxk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Oxalis pes-caprae",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009352-251120083545085/datasets/export for details.
DOI: 10.34740/kaggle/dsv/13876265
title: Trending Youtube Video Statistics (113 Countries)
DOI: 10.6084/m9.figshare.30719585
title: Supplementary Material for: Long-Term Remission of Peritoneal Lymphangiomatosis with Sirolimus Therapy: A Case Report with 8-Year Follow-Up

description: Background:
Peritoneal lymphangiomatosis is a rare benign lymphatic disorder with diagnostic and therapeutic challenges. It may mimic peritoneal carcinomatosis or mesothelioma, often requiring histological confirmation. Management options are limited, and long-term data on targeted therapies, including sirolimus, remain scarce.

Case Presentation:
We present the case of a 45-year-old woman with a history of surgically corrected atrial septal defect, who developed progressive abdominal distension and dysuria in May 2014. Abdominal ultrasound (US) and contrast-enhanced abdominal computed tomography (CT) revealed diffuse ascites, peritoneal thickening, and cystic changes. Diagnostic uncertainty led to an exploratory laparotomy in May 2015, where histopathology confirmed peritoneal lymphangiomatosis. After failed conservative management including dietary modification, diuretic therapy, and repeated paracenteses, she was started on sirolimus 2 mg/day in August 2016. Her serum trough levels were maintained between 5–15 ng/mL. She achieved a Karnofsky Performance Score of 100% (indicating full functional capacity) within two months and has remained in complete clinical and radiologic remission for over 8 years. Diabetes mellitus type 2 was diagnosed during follow-up and is well controlled with insulin therapy.

Conclusion:
This case underscores the difficulty of diagnosing peritoneal lymphangiomatosis and highlights the transformative potential of sirolimus therapy. To our knowledge, this is one of the longest documented remissions of peritoneal lymphangiomatosis under mechanistic target of rapamycin (mTOR) inhibition.
Keywords: peritoneal lymphangiomatosis, sirolimus, mTOR inhibitor, rare disease, ascites, lymphatic malformation, case report, remission, Karnofsky score, targeted therapy.
DOI: 10.6084/m9.figshare.30719585.v1
title: Supplementary Material for: Long-Term Remission of Peritoneal Lymphangiomatosis with Sirolimus Therapy: A Case Report with 8-Year Follow-Up

description: Background:
Peritoneal lymphangiomatosis is a rare benign lymphatic disorder with diagnostic and therapeutic challenges. It may mimic peritoneal carcinomatosis or mesothelioma, often requiring histological confirmation. Management options are limited, and long-term data on targeted therapies, including sirolimus, remain scarce.

Case Presentation:
We present the case of a 45-year-old woman with a history of surgically corrected atrial septal defect, who developed progressive abdominal distension and dysuria in May 2014. Abdominal ultrasound (US) and contrast-enhanced abdominal computed tomography (CT) revealed diffuse ascites, peritoneal thickening, and cystic changes. Diagnostic uncertainty led to an exploratory laparotomy in May 2015, where histopathology confirmed peritoneal lymphangiomatosis. After failed conservative management including dietary modification, diuretic therapy, and repeated paracenteses, she was started on sirolimus 2 mg/day in August 2016. Her serum trough levels were maintained between 5–15 ng/mL. She achieved a Karnofsky Performance Score of 100% (indicating full functional capacity) within two months and has remained in complete clinical and radiologic remission for over 8 years. Diabetes mellitus type 2 was diagnosed during follow-up and is well controlled with insulin therapy.

Conclusion:
This case underscores the difficulty of diagnosing peritoneal lymphangiomatosis and highlights the transformative potential of sirolimus therapy. To our knowledge, this is one of the longest documented remissions of peritoneal lymphangiomatosis under mechanistic target of rapamycin (mTOR) inhibition.
Keywords: peritoneal lymphangiomatosis, sirolimus, mTOR inhibitor, rare disease, ascites, lymphatic malformation, case report, remission, Karnofsky score, targeted therapy.
DOI: 10.15468/dl.uhseuw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aphanius baeticus, Aphanius iberus, Salmo trutta)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "Elevation is greater than 5000m",
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009355-251120083545085/datasets/export for details.
DOI: 10.6084/m9.figshare.30719588
title: Supplementary Material for: Biallelic TMEM72 variants in patients with a nephronophthisis-like phenotype

description: Introduction: Nephronophthisis (NPHP) is an autosomal recessive kidney disease resulting mainly from primary cilium defects, with unspecific and variable symptoms that can progress to kidney failure needing replacement therapy at a young age. Currently, up to 64% of likely NPHP cases can be diagnosed by assessing known genes. Therefore, there is a need to gain more insight in what genes can cause this disease.
Methods: In a diagnostic setting, we performed broad genetic testing in patients with advanced kidney disease. We carried out in silico and in vitro analyses for TMEM72, including immunohistochemistry and affinity proteomics, and in vivo experiments to further interpret our findings. 
Results: We identified biallelic TMEM72 variants in nine patients from six families with a phenotype suggestive for NPHP. Five families presented with kidney failure at a (young) adult age. One family had a different phenotype with prenatal onset of kidney failure and neurological symptoms. The phenotypes of the patients correspond to TMEM72 expression mainly in the kidney. In silico analyses indicate that homozygous loss-of-function variants are likely not tolerated in TMEM72. Immunohistochemistry staining of kidney biopsies revealed altered localization and expression of TMEM72 in cases compared to controls. In human-derived tubuloids, we showed that TMEM72 localizes to the cilium. Furthermore, using an affinity proteomics approach, we found an association of TMEM72 and ciliary function, more specifically in selective ciliary cholesterol transport. 
Conclusion: We present the first genetic evidence, underlined by immunohistochemistry and protein binding assays, linking TMEM72 variants to kidney disease and ciliary function. We conclude that TMEM72 is a candidate gene for NPHP. Future work is needed to further characterize TMEM72 variants and unravel its disease mechanism.
DOI: 10.6084/m9.figshare.30719588.v1
title: Supplementary Material for: Biallelic TMEM72 variants in patients with a nephronophthisis-like phenotype

description: Introduction: Nephronophthisis (NPHP) is an autosomal recessive kidney disease resulting mainly from primary cilium defects, with unspecific and variable symptoms that can progress to kidney failure needing replacement therapy at a young age. Currently, up to 64% of likely NPHP cases can be diagnosed by assessing known genes. Therefore, there is a need to gain more insight in what genes can cause this disease.
Methods: In a diagnostic setting, we performed broad genetic testing in patients with advanced kidney disease. We carried out in silico and in vitro analyses for TMEM72, including immunohistochemistry and affinity proteomics, and in vivo experiments to further interpret our findings. 
Results: We identified biallelic TMEM72 variants in nine patients from six families with a phenotype suggestive for NPHP. Five families presented with kidney failure at a (young) adult age. One family had a different phenotype with prenatal onset of kidney failure and neurological symptoms. The phenotypes of the patients correspond to TMEM72 expression mainly in the kidney. In silico analyses indicate that homozygous loss-of-function variants are likely not tolerated in TMEM72. Immunohistochemistry staining of kidney biopsies revealed altered localization and expression of TMEM72 in cases compared to controls. In human-derived tubuloids, we showed that TMEM72 localizes to the cilium. Furthermore, using an affinity proteomics approach, we found an association of TMEM72 and ciliary function, more specifically in selective ciliary cholesterol transport. 
Conclusion: We present the first genetic evidence, underlined by immunohistochemistry and protein binding assays, linking TMEM72 variants to kidney disease and ciliary function. We conclude that TMEM72 is a candidate gene for NPHP. Future work is needed to further characterize TMEM72 variants and unravel its disease mechanism.
DOI: 10.6084/m9.figshare.30719594
title: Supplementary Material for: A case of hyperinsulinemic hypoglycemia associated with atypical Fanconi renal tubulopathy syndrome caused by an HNF4A variant

description: This case illustrates the challenges in the diagnosis of a rare disease with an intricate orientation, requiring an in-depth medical history review and a comprehensive series of laboratory tests with genetic confirmation. The patient presented with myoclonic jerks associated with hypoglycaemia and proximal tubulopathy. A fasting functional test was performed to investigate the origin of the hypoglycaemia. The identification of inadequate insulin suppression with hypoketotic hypoglycaemia led to the diagnosis of hyperinsulinaemic hypoglycaemia (HH). In addition, the diagnosis of chronic renal dysfunction associated with atypical Fanconi renal tubulopathy syndrome (FRTS) was indicated on the basis of a decreased estimated glomerular filtration rate (eGFR), nephrocalcinosis, millimetric lithiasis, rickets and complex proximal tubulopathy, among other laboratory findings. The association of atypical FRTS with HH was an indication for molecular genetic testing. The patient was identified as a carrier of the c.187C&gt;T (p.Arg63Trp) variant in the HNF4A gene, which is a heterozygous missense variant classified as pathogenic. This entity is rare, and the published literature reporting HNF4A gene variants associated with atypical FRTS and HH is limited. It is therefore important to report such cases to contribute to the growing body of evidence and help identify pathogenic HNF4A variants and their implications.
DOI: 10.6084/m9.figshare.30719594.v1
title: Supplementary Material for: A case of hyperinsulinemic hypoglycemia associated with atypical Fanconi renal tubulopathy syndrome caused by an HNF4A variant

description: This case illustrates the challenges in the diagnosis of a rare disease with an intricate orientation, requiring an in-depth medical history review and a comprehensive series of laboratory tests with genetic confirmation. The patient presented with myoclonic jerks associated with hypoglycaemia and proximal tubulopathy. A fasting functional test was performed to investigate the origin of the hypoglycaemia. The identification of inadequate insulin suppression with hypoketotic hypoglycaemia led to the diagnosis of hyperinsulinaemic hypoglycaemia (HH). In addition, the diagnosis of chronic renal dysfunction associated with atypical Fanconi renal tubulopathy syndrome (FRTS) was indicated on the basis of a decreased estimated glomerular filtration rate (eGFR), nephrocalcinosis, millimetric lithiasis, rickets and complex proximal tubulopathy, among other laboratory findings. The association of atypical FRTS with HH was an indication for molecular genetic testing. The patient was identified as a carrier of the c.187C&gt;T (p.Arg63Trp) variant in the HNF4A gene, which is a heterozygous missense variant classified as pathogenic. This entity is rare, and the published literature reporting HNF4A gene variants associated with atypical FRTS and HH is limited. It is therefore important to report such cases to contribute to the growing body of evidence and help identify pathogenic HNF4A variants and their implications.
DOI: 10.15468/dl.h5j7pg
title: Occurrence Download

description: A dataset containing 9309 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhabdophis)",
 "DecimalLatitude is greater than or equal to 0",
 "DecimalLatitude is less than or equal to 60",
 "DecimalLongitude is greater than or equal to 60",
 "DecimalLongitude is less than or equal to 150",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9309 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009356-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30719552
title: HEC-RAS files demonstrating the SWECO method (Shallow-Water Equations Cut-plane Orientation)

description: HEC-RAS input and results files for three demonstrations cases: 1) a sluice gate, 2) a backward-facing step, ancd c) an inclined intake.
DOI: 10.6084/m9.figshare.30719552.v1
title: HEC-RAS files demonstrating the SWECO method (Shallow-Water Equations Cut-plane Orientation)

description: HEC-RAS input and results files for three demonstrations cases: 1) a sluice gate, 2) a backward-facing step, ancd c) an inclined intake.
DOI: 10.15468/dl.bxe96c
title: Occurrence Download

description: A dataset containing 7462 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Amphibia [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Santander)",
 "Year 2020-2025"
 ]
 }
 ]
}

 The dataset includes 7462 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009358-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.