cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9792302.v5
title: US-NC4_Soil_Resp_daily

description: Site info: Alligator River National Wildlife Refuge, North Carolina, USAEcosystem type: mixed hardwood swamp forest (forested wetland)<br>Data: Continuous daily soil respiration data from 3/19/2009-12/31/2011
DOI: 10.6084/m9.figshare.9792302.v4
title: US-NC4_Soil_Resp_daily

description: Site info: Alligator River National Wildlife Refuge, North Carolina, USAEcosystem type: mixed hardwood swamp forest (forested wetland)<br>Data: Continuous daily soil respiration data from 3/19/2009-12/31/2011
DOI: 10.6084/m9.figshare.9792161.v2
title: US-NC4_30min_soil_resp_data

description: Site location: Alligator River National Wildlife RefugeEcosystem type: mixed hardwood swamp forest (forested wetland)Data: Continuous 30-min soil respiration from 07/01/2009 to 12/31/2010<br><br>
DOI: 10.6084/m9.figshare.9792017
title: ENCFF894MAD.bigWig

description: RNA-seq REN<br>
DOI: 10.6084/m9.figshare.9792017.v1
title: ENCFF894MAD.bigWig

description: RNA-seq REN<br>
DOI: 10.6084/m9.figshare.9791693
title: nitrogen use by Antarctic plants and DSEs

description: These data relate to paper published in Ecology Letters:<br>Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic<br>Please refer to methods described there. <br>
DOI: 10.6084/m9.figshare.9791666
title: Supplementary Material for: Epstein-Barr Virus Infection and Increased Sporadic Breast Carcinoma Risk: A Meta-Analysis

description: <b><i>Objective:</i></b> An association of Epstein-Barr virus (EBV) infection with breast carcinoma (BC) risk has so far been disputed in the literature. Therefore, we performed a meta-analysis to clarify this relationship. <b><i>Materials and Methods:</i></b> An electronic database search for eligible case-control studies was performed using PubMed, Embase, Web of Science, the Cochrane Library, CNKI, and Wanfang Data until May 17, 2018. The pooled OR and 95% CI were used to estimate the relationship between EBV infection and BC risk using a fixed or random-effects model depending on heterogeneity. Subgroup analysis and meta-regression were used to explore the heterogeneity. Publication bias was assessed using Egger’s and Harbord’s tests. <b><i>Results:</i></b> A total of 16 studies with 1,279 patients and 814 controls were reviewed based on our inclusion and exclusion criteria. Compared with the control group, EBV infection had a significant association with BC risk (OR 4.75, 95% CI 2.53–8.92, <i>p</i> &lt; 0.01) with significant heterogeneity observed (<i>I</i><sup>2</sup> = 65.3%). The subgroup analysis revealed that region and tissue type might explain potential sources of heterogeneity. The sensitivity analyses yielded stable results. No significant publication bias was observed. <b><i>Conclusion:</i></b> The current results suggest that EBV infection is significantly associated with increased risk of BC.
DOI: 10.6084/m9.figshare.9791693.v1
title: nitrogen use by Antarctic plants and DSEs

description: These data relate to paper published in Ecology Letters:<br>Angiosperm symbioses with non-mycorrhizal fungal partners enhance N acquisition from ancient organic matter in a warming maritime Antarctic<br>Please refer to methods described there. <br>
DOI: 10.6084/m9.figshare.9791666.v1
title: Supplementary Material for: Epstein-Barr Virus Infection and Increased Sporadic Breast Carcinoma Risk: A Meta-Analysis

description: <b><i>Objective:</i></b> An association of Epstein-Barr virus (EBV) infection with breast carcinoma (BC) risk has so far been disputed in the literature. Therefore, we performed a meta-analysis to clarify this relationship. <b><i>Materials and Methods:</i></b> An electronic database search for eligible case-control studies was performed using PubMed, Embase, Web of Science, the Cochrane Library, CNKI, and Wanfang Data until May 17, 2018. The pooled OR and 95% CI were used to estimate the relationship between EBV infection and BC risk using a fixed or random-effects model depending on heterogeneity. Subgroup analysis and meta-regression were used to explore the heterogeneity. Publication bias was assessed using Egger’s and Harbord’s tests. <b><i>Results:</i></b> A total of 16 studies with 1,279 patients and 814 controls were reviewed based on our inclusion and exclusion criteria. Compared with the control group, EBV infection had a significant association with BC risk (OR 4.75, 95% CI 2.53–8.92, <i>p</i> &lt; 0.01) with significant heterogeneity observed (<i>I</i><sup>2</sup> = 65.3%). The subgroup analysis revealed that region and tissue type might explain potential sources of heterogeneity. The sensitivity analyses yielded stable results. No significant publication bias was observed. <b><i>Conclusion:</i></b> The current results suggest that EBV infection is significantly associated with increased risk of BC.
DOI: 10.6084/m9.figshare.9791609
title: Supplemental Table 1

description: Demographic, clinical, biochemical, immunohistochemical and molecular characteristics of 251 patients with pituitary neuroendocrine tumors
DOI: 10.6084/m9.figshare.9791612
title: Data.xlsx

description: This data includes for the first experiment- empathy ratings by participants in response to pictures of losing and winning athletes. Before analyzing our data, we readjusted our scale so that the zero would be in the middle.We ran a paired samples t-test using the program IBM SPSS statistics v23 (2015). As for the second experiment- we used a statistical analysis to investigate which face and body features predicted the highest and lowest scores of empathy. On a five-point scale (from 1, very sad, to 5, very happy), the participants rated the level of empathy they felt with regard to the images on the screen. Since the dependent variable was ordinal (empathy level 1 to 5), we ran an ordinal cumulative mixed model with fixed effects, by participants and by items (i.e, by pictures). Each predictor had different numbers of levels. To standardize the contrast, we chose a simple coding scheme. The coding scheme was designed to compare the mean of the dependent variable for a given level to the overall mean of that level (e.g., for mouth, neutral/relaxed mouth was the reference level, for body, standing was the reference level). Finally, we ran a post-hoc analysis using the pairwise ordinal paired test using package lsmeans in R. This test calculates the p-values for each independent variable level from the paired cumulative link model.<br>
DOI: 10.5517/ccdc.csd.cc2270y9
title: CCDC 1913380: Experimental Crystal Structure Determination

description: Related Article: Jiří Pinkas, Michal Horáček, Vojtech Varga, Karel Mach, Katarína Szarka, Andrea Vargová, Róbert Gyepes|2020|Polyhedron|188|114704|doi:10.1016/j.poly.2020.114704
DOI: 10.6084/m9.figshare.9791606
title: Global Light Intensity Change Coefficient (LICC) dataset

description: Pixel-level LICC can maintain the resolution of light data and reveal the characteristics of economic development and urbanization process more precisely than traditional light data change analysis, which can be used as a new data for subsequent urbanization research.
DOI: 10.5517/ccdc.csd.cc22g8xr
title: CCDC 1920354: Experimental Crystal Structure Determination

description: Related Article: Yi-Wen Bai, Guimei Shi, Jun Gao, Fa-Nian Shi|2021|J.Phys.Chem.Solids|148|109657|doi:10.1016/j.jpcs.2020.109657
DOI: 10.6084/m9.figshare.9791606.v1
title: Global Light Intensity Change Coefficient (LICC) dataset

description: Pixel-level LICC can maintain the resolution of light data and reveal the characteristics of economic development and urbanization process more precisely than traditional light data change analysis, which can be used as a new data for subsequent urbanization research.
DOI: 10.5517/ccdc.csd.cc230wdf
title: CCDC 1937264: Experimental Crystal Structure Determination

description: Related Article: Xuesong Zhou, Lele Qiu, Ruiqing Fan, Haoxin Ye, Changhao Tian, Sue Hao, Yulin Yang|2020|J.Power.Sources.|473|228556|doi:10.1016/j.jpowsour.2020.228556
DOI: 10.5517/ccdc.csd.cc23ds2d
title: CCDC 1948693: Experimental Crystal Structure Determination

description: Related Article: Halyna I. Buvailo, Mariia V. Pavliuk, Valeriya G. Makhankova, Vladimir N. Kokozay, Volodymyr Bon, Edgar Mijangos, Sergii I. Shylin, Julia Jezierska|2020|Inorg.Chem.Commun.|119|108111|doi:10.1016/j.inoche.2020.108111
DOI: 10.25375/uct.9791546
title: KNP cactus counts archive

description: Evaluation, over 22 years, of biological control of an invasive cactus, <i>Opuntia stricta</i>, in the Kruger National Park, South Africa. Annually, from 1992 - 2013, the numbers of <i>O. stricta </i>plants, cladodes and fruits were recorded, along permanent transects, at four sites with different invasion-histories and with high- and low-densities of the cactus. The abundance of two biological control agent species was also monitored: (i) the cochineal insect, <i>Dactylopius opuntiae</i>, and (ii) the cactus moth, cactoblastis, <i>Cactoblastis cactorum</i>.
DOI: 10.5517/ccdc.csd.cc23zx34
title: CCDC 1966116: Experimental Crystal Structure Determination

description: Related Article: Huan-Ping Zhang, Yu-Xun Zhu, Zhao-Xin Zhang, Li-Sha Chai, Yun-Bao Liu, Hai-Bo Yu, Yong Li|2020|Tetrahedron|76|131455|doi:10.1016/j.tet.2020.131455
DOI: 10.6084/m9.figshare.9791543
title: Psychophysical experiment answer

description: These files are answer from the subjects in psychophysical experiment using vehicle steering wheel system.
DOI: 10.25375/uct.9791546.v2
title: KNP cactus counts archive

description: Evaluation, over 22 years, of biological control of an invasive cactus, <i>Opuntia stricta</i>, in the Kruger National Park, South Africa. Annually, from 1992 - 2013, the numbers of <i>O. stricta </i>plants, cladodes and fruits were recorded, along permanent transects, at four sites with different invasion-histories and with high- and low-densities of the cactus. The abundance of two biological control agent species was also monitored: (i) the cochineal insect, <i>Dactylopius opuntiae</i>, and (ii) the cactus moth, cactoblastis, <i>Cactoblastis cactorum</i>.
DOI: 10.6084/m9.figshare.9791543.v1
title: Psychophysical experiment answer

description: These files are answer from the subjects in psychophysical experiment using vehicle steering wheel system.
DOI: 10.5517/ccdc.csd.cc24jg27
title: CCDC 1982018: Experimental Crystal Structure Determination

description: Related Article: Haibin Yuan, Hui Liu, Fen You, Xiaochao Shi|2020|Inorg.Chem.Commun.|119|108139|doi:10.1016/j.inoche.2020.108139
DOI: 10.6084/m9.figshare.9791468
title: An integrated computational approach to identify GC minor groove binders using various molecular docking scoring functions, dynamics simulations and binding free energy calculations

description: Understanding the DNA-ligand interaction mechanism is of utmost importance to design selective inhibitors targeting the GC- and AT-rich DNA. This forms a primary strategy to block the association of transcription factors to promoters and subsequently, reduce the expression of genes. We present here an integrated approach combining various docking scoring functions, selective ligand-based pharmacophore models, molecular dynamics simulations and binding free energy calculations to prioritize natural compounds specific to GC minor groove binding. The approach initially applies a selective ligand-based pharmacophore model built upon known GC minor groove binders to identify potential GC minor groove binders from natural compound repositories. These GC minor groove binders were then cross-examined with selective pharmacophore models (controls) based on AT-rich binders and GC intercalators to assess its unfitness. This approach involves the calculation of binding energies of known GC- and AT minor groove binders using three scoring functions without any constraint on groove specificity of GC- and AT-rich DNA. The evaluation of empirical scoring functions led to enumeration of a new parameter, the energy difference computed using Glide (sensitivity = 80%) to recognize GC-rich binders effectively. Molecular dynamics simulations and binding free energy calculations (MM/GBSA) constituted the final phase of this approach to analyze the interactions of natural molecules (hits) with GC-rich DNA comprehensively. Seven natural molecules were selected which exhibited fewer fluctuations in RMSD and RMSF profiles and better GC-rich DNA binding with low free energies of binding. These natural hits prioritized by this integrated approach can be tested in DNA binding assay. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.9791462
title: pXRF_standard_laboratory_dataset

description: Raw spectrum of pXRF analysis on geochemical standards DR-N, BXN, and Bordezac : rich iron formation from the Pigmentothèque collection. Acquired in laboratory conditions, dataset with pdf reports
DOI: 10.6084/m9.figshare.9791465
title: SIMO MAG table v2

description: Description of 45 curated metagenome-assembled genomes (MAGs) binned from assemblies of coastal seawater metagenomes collected from Sapelo Island (GA, USA). Sequence data are available as BioProject PRJNA552566 in NCBI. Updated from original version on FigShare.<br>
DOI: 10.6084/m9.figshare.9791468.v2
title: An integrated computational approach to identify GC minor groove binders using various molecular docking scoring functions, dynamics simulations and binding free energy calculations

description: Understanding the DNA-ligand interaction mechanism is of utmost importance to design selective inhibitors targeting the GC- and AT-rich DNA. This forms a primary strategy to block the association of transcription factors to promoters and subsequently, reduce the expression of genes. We present here an integrated approach combining various docking scoring functions, selective ligand-based pharmacophore models, molecular dynamics simulations and binding free energy calculations to prioritize natural compounds specific to GC minor groove binding. The approach initially applies a selective ligand-based pharmacophore model built upon known GC minor groove binders to identify potential GC minor groove binders from natural compound repositories. These GC minor groove binders were then cross-examined with selective pharmacophore models (controls) based on AT-rich binders and GC intercalators to assess its unfitness. This approach involves the calculation of binding energies of known GC- and AT minor groove binders using three scoring functions without any constraint on groove specificity of GC- and AT-rich DNA. The evaluation of empirical scoring functions led to enumeration of a new parameter, the energy difference computed using Glide (sensitivity = 80%) to recognize GC-rich binders effectively. Molecular dynamics simulations and binding free energy calculations (MM/GBSA) constituted the final phase of this approach to analyze the interactions of natural molecules (hits) with GC-rich DNA comprehensively. Seven natural molecules were selected which exhibited fewer fluctuations in RMSD and RMSF profiles and better GC-rich DNA binding with low free energies of binding. These natural hits prioritized by this integrated approach can be tested in DNA binding assay. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.9791444
title: Real map files

description: Fragmentation maps based on real landscape patterns for use in Thompson et al (2019), Ecology Letters, Characterising extinction debt following habitat fragmentation using neutral theory
DOI: 10.6084/m9.figshare.9791462.v2
title: pXRF_standard_laboratory_dataset

description: Raw spectrum of pXRF analysis on geochemical standards DR-N, BXN, and Bordezac : rich iron formation from the Pigmentothèque collection. Acquired in laboratory conditions, dataset with pdf reports
DOI: 10.6084/m9.figshare.9791444.v1
title: Real map files

description: Fragmentation maps based on real landscape patterns for use in Thompson et al (2019), Ecology Letters, Characterising extinction debt following habitat fragmentation using neutral theory
DOI: 10.6084/m9.figshare.9791432
title: pXRF_standard_cave_dataset

description: pXRF analysis of set of geochemical standards DR-N, BXN, and Bordezac : rich iron formation from the Pigmentothèque collection. Acquired in cave condition in november 2017
DOI: 10.6084/m9.figshare.9791435
title: Metadata record for: Longitudinal dataset of human-building interactions in U.S. offices

description: This dataset contains key characteristics about the data described in the Data Descriptor Longitudinal dataset of human-building interactions in U.S. offices. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9791462.v1
title: pXRF_standard_laboratory_dataset

description: Raw spectrum of pXRF analysis on geochemical standards DR-N, BXN, and Bordezac : rich iron formation from the Pigmentothèque collection. Acquired in laboratory conditions, dataset with pdf reports
DOI: 10.6084/m9.figshare.9791432.v1
title: pXRF_standard_cave_dataset

description: pXRF analysis of set of geochemical standards DR-N, BXN, and Bordezac : rich iron formation from the Pigmentothèque collection. Acquired in cave condition in november 2017
DOI: 10.6084/m9.figshare.9791435.v2
title: Metadata record for: Longitudinal dataset of human-building interactions in U.S. offices

description: This dataset contains key characteristics about the data described in the Data Descriptor Longitudinal dataset of human-building interactions in U.S. offices. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.9791417
title: Supplementary Material for: Spoilt for Choice: A Survey of Current Practices of Surgical Urinary Stone Treatment and Adherence to Evidence-Based Guidelines among Swiss Urologists

description: <b><i>Introduction:</i></b> Urologists have to master a variety of techniques to be able to offer the most appropriate surgical stone treatment for each individual patient. Therefore, we performed a survey among board-certified Swiss urologists to assess the availability of the different surgical methods, the current practices of surgical treatment of urolithiasis and the adherence to evidence-based guideline recommendations in Switzerland. <b><i>Methods:</i></b> A 14-question survey assessed the working environment, equipment, perioperative settings and decision trees for specific stone scenarios. Data was analyzed using descriptive statistics and chi-square tests to determine differences between frequencies of answers. <b><i>Results:</i></b> Hundred and five members of <i>Swiss Urology</i> (38%) completed the survey. All treatment modalities are available for the majority of respondents. Ureterorenoscopy was found to have the highest availability (100%) and was the preferred choice in the majority of stone scenarios. A high adherence to the guidelines was found for the treatment of ureteral stones &lt;10 mm (100% proximal and distal), and &gt;10 mm (69% proximal, 94% distal). All respondents answered in accordance with the guidelines regarding the treatment of middle and upper pole stones &lt;10 mm, 10–20 mm and lower pole stones 10–20 mm. Guideline adherence was 99% for lower pole stones &lt;10 mm, 78% for lower pole stones &gt;20 mm, and 63% for middle/upper pole stones &gt;20 mm. <b><i>Conclusion:</i></b> This survey provides a detailed insight into current stone treatment practices in Switzerland. The full spectrum of urinary stone treatment options is available for the majority of Swiss urologists. The choice of treatment shows a high accordance with evidence-based guidelines and a preference for retrograde endoscopic surgery in the majority of stone scenarios.
DOI: 10.6084/m9.figshare.9791435.v1
title: Metadata record for: Longitudinal dataset of human-building interactions in U.S. offices

description: This dataset contains key characteristics about the data described in the Data Descriptor Longitudinal dataset of human-building interactions in U.S. offices. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9791411
title: Routes in Lyon network

description: This file contains the attributes of all the routes in the Lyon network, after removing the highly overlapping routes.<br>The data includes the coordinates of the origin and destination, the distance between the origin and destination zones, the distance between the origin and destination of the routes, the length of the routes, the directness of the routes, the number of turns per km and the % of freeway conforming each route.<br>
DOI: 10.6084/m9.figshare.9791405
title: pXRF_november_2017_grotte_aux_points_campain_data

description: Raw spectrum of pXRF analyse of limestone and pictorial matter at the Grotte aux Points (Gard, France). Acquired with an Elio XGLab pXRF in novembre 2017. Localization table of point analysis on the cave wall and pdf reports
DOI: 10.6084/m9.figshare.9791411.v1
title: Routes in Lyon network

description: This file contains the attributes of all the routes in the Lyon network, after removing the highly overlapping routes.<br>The data includes the coordinates of the origin and destination, the distance between the origin and destination zones, the distance between the origin and destination of the routes, the length of the routes, the directness of the routes, the number of turns per km and the % of freeway conforming each route.<br>
DOI: 10.6084/m9.figshare.9791405.v1
title: pXRF_november_2017_grotte_aux_points_campain_data

description: Raw spectrum of pXRF analyse of limestone and pictorial matter at the Grotte aux Points (Gard, France). Acquired with an Elio XGLab pXRF in novembre 2017. Localization table of point analysis on the cave wall and pdf reports
DOI: 10.6084/m9.figshare.9791384
title: Responsible Dog Ownership workshop data

description: Randomised controlled trial data collected as part of an impact assessment for Responsible Dog Ownership workshops aiming to increase children's attitudes towards responsible ownership.
DOI: 10.6084/m9.figshare.9791384.v2
title: Responsible Dog Ownership workshop data

description: Randomised controlled trial data collected as part of an impact assessment for Responsible Dog Ownership workshops aiming to increase children's attitudes towards responsible ownership.
DOI: 10.6084/m9.figshare.9791384.v1
title: Responsible Dog Ownership workshop data

description: Randomised controlled trial data collected as part of an impact assessment for Responsible Dog Ownership workshops aiming to increase children's attitudes towards responsible ownership.
DOI: 10.5517/ccdc.csd.cc251z18
title: CCDC 1997889: Experimental Crystal Structure Determination

description: Related Article: Li-Cheng Song, Wei Chen, Li Feng|2020|New J.Chem.|44|14015|doi:10.1039/D0NJ02586K
DOI: 10.5517/ccdc.csd.cc251z29
title: CCDC 1997890: Experimental Crystal Structure Determination

description: Related Article: Li-Cheng Song, Wei Chen, Li Feng|2020|New J.Chem.|44|14015|doi:10.1039/D0NJ02586K
DOI: 10.5517/ccdc.csd.cc251z3b
title: CCDC 1997891: Experimental Crystal Structure Determination

description: Related Article: Li-Cheng Song, Wei Chen, Li Feng|2020|New J.Chem.|44|14015|doi:10.1039/D0NJ02586K