cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29232734.v1
title: Organized Pathway CHEPS data for Sun et al. (PAIN, 2025)

description: Single data file of all trials for all participants in Sun et al. (PAIN, 2025). All timestamps have been aligned across trials and participants, a shift of up to 7.5 ms. Redundant points (those not sampled at the 20 ms intervals) have been removed, and missing data points (~0.3% of total, flagged in the dataset) have been added through linear interpolation of the CoVAS values. Otherwise, the data are in their raw (and de-identified) form.The included variables are:<br>participantID: P01-P64trialNumber: 1-16t2Condition: long, pulse, shortprobeSurface: dorsum, palmtrialType: baseline, constant, offsetinterp: 0 or 1 [1 if Pathway didn’t record an expected datapoint, which happens for 0.3% of them.]time: for each trial in mstemp: presented temperature in degrees Ccovas: 0-100
DOI: 10.15468/dl.7qd8ct
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019488-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r7c5x3
title: Occurrence Download

description: A dataset containing 4823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia rangiferina (L.) Weber ex F.H.Wigg.",
 "Country is Norway"
 ]
}

 The dataset includes 4823 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019489-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scywyt
title: Occurrence Download

description: A dataset containing 4823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia rangiferina (L.) Weber ex F.H.Wigg.",
 "Country is Norway"
 ]
}

 The dataset includes 4823 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019491-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f223vv
title: Occurrence Download

description: A dataset containing 4823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia rangiferina (L.) Weber ex F.H.Wigg.",
 "Country is Norway"
 ]
}

 The dataset includes 4823 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019492-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29070350
title: Dataset from Enhanced Langton's ant model: exploring criticality and phase transitions in artificial life systems

description: Langton's ant demonstrates a fascinating feature as it travels on a lattice field consisting of white and black states. The ant's movements are governed by simple turning rules based on the states of cells it encounters. This results in a transition from random to ordered phase. Langton's ant has garnered significant interest as a minimalistic example of artificial life. However, its potential to exhibit critical properties—an essential aspect of artificial life systems—has not been extensively explored. This study introduced an enhanced Langton's ant model to address this gap. In this proposed framework, the ant (referred to as the walker) considers its prior interaction (revisits) and the conditions of its surrounding cell when determining the state transitions of the lattice. The model demonstrates phase transitions in a specific variable and exhibits scale-free properties and unpredictable dynamic behaviours near critical thresholds.
DOI: 10.6084/m9.figshare.29070350.v1
title: Dataset from Enhanced Langton's ant model: exploring criticality and phase transitions in artificial life systems

description: Langton's ant demonstrates a fascinating feature as it travels on a lattice field consisting of white and black states. The ant's movements are governed by simple turning rules based on the states of cells it encounters. This results in a transition from random to ordered phase. Langton's ant has garnered significant interest as a minimalistic example of artificial life. However, its potential to exhibit critical properties—an essential aspect of artificial life systems—has not been extensively explored. This study introduced an enhanced Langton's ant model to address this gap. In this proposed framework, the ant (referred to as the walker) considers its prior interaction (revisits) and the conditions of its surrounding cell when determining the state transitions of the lattice. The model demonstrates phase transitions in a specific variable and exhibits scale-free properties and unpredictable dynamic behaviours near critical thresholds.
DOI: 10.15468/dl.2beham
title: Occurrence Download

description: A dataset containing 81694330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "License is CC-BY 4.0",
 "Year 2022-2025"
 ]
}

 The dataset includes 81694330 records from 6542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019476-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57761/5mhr-g015
title: Item Response Warehouse
DOI: 10.57761/60e1-sc38
title: Item Response Warehouse

description: itemresponsewarehouse@stanford.edu
description: The Item Response Warehouse (IRW) is a collection of open, harmonized item response datasets.

- Open: The data are licensed for reformatting and public reuse. Their provenance is documented and code used to transform original data to meet the IRW data standard is available.
  
- Harmonized: The data are formatted to a common standard. The goal of the IRW is to make large quantities of data available for standardized analysis given the common formatting. 
  
 - Item Response: The IRW is comprised of cross-classified item responses. The key element required of data for inclusion in the IRW is that the data need to report individual responses that are cross-classified by the focus of measurement (typically a person) and the measurement tool (typically an item).
  
These datasets in IRW span a wide range of measures; examples include measures of ability in education settings, measures of partisanship based on voting records, and personality measures based on survey questions.  Responses can be scored in a variety of ways (dichotomous, polytomous, continuous) and may contain additional data (e.g., response time).
description: Tables have been harmonized as per details given [here](<https://datapages.github.io/irw/standard.html>).


description: Please find information about data licenses and citation info [here](<https://datapages.github.io/irw/docs.html>).
DOI: 10.57761/zxwh-bc47
title: Item Response Warehouse

description: itemresponsewarehouse@stanford.edu
description: Tables have been harmonized as per details given [here](<https://datapages.github.io/irw/standard.html>).


description: Please find information about data licenses and citation info [here](<https://datapages.github.io/irw/docs.html>).
DOI: 10.57761/kbsb-b466
title: Item Response Warehouse
DOI: 10.48597/2paz-h5qk
title: Measurement of Aerosol light scattering at Montseny

description: Measurement of Aerosol light scattering at Montseny
DOI: 10.48597/74h7-xwsm
title: Measurement of Aerosol light scattering at Montseny

description: Measurement of Aerosol light scattering at Montseny
DOI: 10.48597/jgnh-j99d
title: Measurement of Aerosol light scattering at Montseny

description: Measurement of Aerosol light scattering at Montseny
DOI: 10.48597/yes4-byx3
title: Measurement of Aerosol light scattering at Montseny

description: Measurement of Aerosol light scattering at Montseny
DOI: 10.57761/gs68-bs66
title: Item Response Warehouse
DOI: 10.57761/r6yk-9140
title: Item Response Warehouse

description: itemresponsewarehouse@stanford.edu
description: Tables have been harmonized as per details given [here](<https://datapages.github.io/irw/standard.html>).


description: Please find information about data licenses and citation info [here](<https://datapages.github.io/irw/docs.html>).
DOI: 10.57761/1cmm-gf27
title: Item Response Warehouse

description: itemresponsewarehouse@stanford.edu
description: The Item Response Warehouse (IRW) is a collection of open, harmonized item response datasets.

- Open: The data are licensed for reformatting and public reuse. Their provenance is documented and code used to transform original data to meet the IRW data standard is available.
  
- Harmonized: The data are formatted to a common standard. The goal of the IRW is to make large quantities of data available for standardized analysis given the common formatting. 
  
 - Item Response: The IRW is comprised of cross-classified item responses. The key element required of data for inclusion in the IRW is that the data need to report individual responses that are cross-classified by the focus of measurement (typically a person) and the measurement tool (typically an item).
  
These datasets in IRW span a wide range of measures; examples include measures of ability in education settings, measures of partisanship based on voting records, and personality measures based on survey questions.  Responses can be scored in a variety of ways (dichotomous, polytomous, continuous) and may contain additional data (e.g., response time).
description: Tables have been harmonized as per details given [here](<https://datapages.github.io/irw/standard.html>).


description: Please find information about data licenses and citation info [here](<https://datapages.github.io/irw/docs.html>).
DOI: 10.5281/zenodo.15175217
title: Photoacoustic data annotations supplementing the paper: "A study on the adequacy of common IQA measures for medical images"

description: We have decided to make the data set available to the research community free of charge under the Creative Commons Attribution 4.0 International license. If you use these images in your research, we kindly ask that you reference this website and our papers listed below.

 



[1] A. Breger, C. Karner, I. Selby, J. Gröhl, S. Dittmer, E. Lilley, J. Babar, J. Beckford, T. J Sadler, S. Shahipasand, A. Thavakumar, M. Roberts, C.-B. Schönlieb: A study on the adequacy of common IQA measures for medical images. Springer Lecture Notes in Electrical Engineering, Proceedings of MICAD 2024. DOI: 10.1007/978-981-96-3863-5_41

 

[2] Gröhl, J., Else, T.R., Hacker, L., Bunce, E.V., Sweeney, P.W., Bohndiek, S.E.: Moving beyond simulation: data-driven quantitative photoacoustic imaging using tissue-mimicking phantoms. IEEE Trans Med Imaging PP (Nov 2023). DOI: 10.1109/TMI.2023.3331198 

 

Version 1.1 (April 8): the computed mos_zscores have been added to the annotation file, and the images are in this version already scaled to match the quality ratings.
DOI: 10.15468/dl.c8wy38
title: Occurrence Download

description: A dataset containing 29656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Cerastium alpinum"
 ]
}

 The dataset includes 29656 records from 325 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002605-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/x5c7d-tta96
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-09-14</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-4/rawdata/</p>RCC745_G1tovis_004.mrc,  Tilt Series (Pixel Size 1.26 nm), 687.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-4/rawdata/RCC745_G1tovis_004.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_004.rec,  Reconstruction (Pixel Size 1.26 nm), 561.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-4/3dimage_11961/RCC745_G1tovis_004.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16975995
title: Dataset Link

description: https://binusianorg-my.sharepoint.com/personal/dimas_nugraha005_binus_ac_id/Documents/Open%20Data?csf=1&web=1&e=ZTqwFZ
DOI: 10.5281/zenodo.16975996
title: Dataset Link

description: https://binusianorg-my.sharepoint.com/personal/dimas_nugraha005_binus_ac_id/Documents/Open%20Data?csf=1&web=1&e=ZTqwFZ
DOI: 10.22002/n9h4m-ynb18
title: O. tauri @ G2/M, no drugs

description: O. tauri cell synchronization .
description: <strong>Tilt Series Date:</strong> 2007-09-27</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-56.0°, 56.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Treated with HU for 12 hours, then incubated in fresh MK for</p>
<strong>Sample Preparation:</strong> Q-foil R3.5/1, BSA treated 10nm gold, 100% humidity, -2mm offset,</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-15/rawdata/</p>RCC745_+HU_8PM_07.mrc,  Tilt Series (Pixel Size 1.26 nm), 163.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-15/rawdata/RCC745_+HU_8PM_07.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_+HU_8PM_07.rec,  Reconstruction (Pixel Size 2.52 nm), 471.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-15/3dimage_3248/RCC745_+HU_8PM_07.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5zz3a-60386
title: O. tauri MG132 arrest

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-04-25</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 50uM Propyzamide, 70m in 50uM MG132</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-04-25-42/3dimage_11328/</p>RCC745_MGtovis_045.rec,  Reconstruction (Pixel Size 1.26 nm), 578.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-04-25-42/3dimage_11328/RCC745_MGtovis_045.rec"
        > <i class="download icon"></i> Download </a></p>

        RCC745_MGtovis_045.mrc,  Tilt Series (Pixel Size 1.26 nm), 654.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-04-25-42/rawdata/RCC745_MGtovis_045.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jtwdg-k9891
title: O. tauri MG132 arrest

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-11-16</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 50uM Propyzamide, 70m in 50uM MG132</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-11-16-53/rawdata/</p>RCC745_MGtovis_459.mrc,  Tilt Series (Pixel Size 1.26 nm), 755.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-11-16-53/rawdata/RCC745_MGtovis_459.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_MGtovis_459.rec,  Reconstruction (Pixel Size 1.26 nm), 431.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-11-16-53/3dimage_11871/RCC745_MGtovis_459.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/h8nqe-3tr94
title: MT310_xyl(+)_metal(+)_A22(+)

description: Raw data files of MT310_xyl(+)_metal(+)_A22(+)
description: <strong>Tilt Series Date:</strong> 2009-06-17</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> MT310 was constructed by Martin Thanbichler. The cell was cultured and treated by Zhuo Li. Data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> MT310 cells were induced by xylose and treated with 50 uM AuCl for 20 hours, and treated with 10 ug/ml A22 for 1.5 hours.</p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-17-21/rawdata/</p>09jun17a_A22c_026.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-17-21/rawdata/09jun17a_A22c_026.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun17a_A22c_026_full.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-17-21/3dimage_5020/09jun17a_A22c_026_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/001h4-88r12
title: O. tauri Propyzamide release

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2010-02-12</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 15h in 30uM Propyzamide, Washout Propyzamide</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-27/rawdata/</p>RCC745_RELtovis_030.mrc,  Tilt Series (Pixel Size 1.26 nm), 771.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-27/rawdata/RCC745_RELtovis_030.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_RELtovis_030.rec,  Reconstruction (Pixel Size 1.26 nm), 377.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2010-02-12-27/3dimage_12395/RCC745_RELtovis_030.rec"
        > <i class="download icon"></i> Download </a></p>