cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13725081.v1
title: Additional file 4 of The mutational landscape of human olfactory G protein-coupled receptors

description: Additional file 4. The human OR mutation database table. The mutation data table is available at the human Olfactory Receptor Mutation database (hORMdb) website and contains information of 119,069 natural human OR nucleotide variants extracted from gnomAD v2 and annotated with genomic and structural information as described in the main text (resumed in the diagram of Fig. 1). A total of 78 descriptors were associated with each of the natural variants generating a total of 9,287,382 data points. More information about the data types at each column can be found at the HELP panel on the hORMdb web application.
DOI: 10.6084/m9.figshare.13725110
title: Additional file 1 of What’s in a name? Revisiting medicinal and religious plants at an Amazonian market

description: Additional file 1. Geographic distribution and current status in Brazil. Description: Additional information on the geographic distribution and current status of medicinal and ritual plants found at the Ver-o-Peso in 2018.
DOI: 10.6084/m9.figshare.13725110.v1
title: Additional file 1 of What’s in a name? Revisiting medicinal and religious plants at an Amazonian market

description: Additional file 1. Geographic distribution and current status in Brazil. Description: Additional information on the geographic distribution and current status of medicinal and ritual plants found at the Ver-o-Peso in 2018.
DOI: 10.6084/m9.figshare.13725191
title: Additional file 1 of Multi-omics analysis of aniline-degrading bacterium, Delftia sp. K82

description: Additional file 1: Supplementary Table 1. High abundant proteins (90th percentile of mol%) in aniline culture condition of Delftia sp. K82.
DOI: 10.6084/m9.figshare.13725191.v1
title: Additional file 1 of Multi-omics analysis of aniline-degrading bacterium, Delftia sp. K82

description: Additional file 1: Supplementary Table 1. High abundant proteins (90th percentile of mol%) in aniline culture condition of Delftia sp. K82.
DOI: 10.6084/m9.figshare.13725236.v1
title: Additional file 3 of Comparative transcriptome analysis reveals novel insights into transcriptional responses to phosphorus starvation in oil palm (Elaeis guineensis) root

description: Additional file 3: Table S2. Summary of MapMan analysis associated with the phosphate deficiency DEGs in this study.
DOI: 10.6084/m9.figshare.13725236
title: Additional file 3 of Comparative transcriptome analysis reveals novel insights into transcriptional responses to phosphorus starvation in oil palm (Elaeis guineensis) root

description: Additional file 3: Table S2. Summary of MapMan analysis associated with the phosphate deficiency DEGs in this study.
DOI: 10.6084/m9.figshare.13725239.v1
title: Additional file 4 of Comparative transcriptome analysis reveals novel insights into transcriptional responses to phosphorus starvation in oil palm (Elaeis guineensis) root

description: Additional file 4: Table S3. List of primers used for quantitative gene expression analysis in oil palm seedlings.
DOI: 10.6084/m9.figshare.13725239
title: Additional file 4 of Comparative transcriptome analysis reveals novel insights into transcriptional responses to phosphorus starvation in oil palm (Elaeis guineensis) root

description: Additional file 4: Table S3. List of primers used for quantitative gene expression analysis in oil palm seedlings.
DOI: 10.6084/m9.figshare.13725336
title: Additional file 2 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 2: Supplementary Table 1: Alpha diversity across the data set. Three measures of the alpha-diversity (observed diversity, Chao1 Index and Shannon Index) across the data set, representing the diversity of species within each sample. For each sample, random subsamples of 5000 OTUs were taken for each sample and alpha-diversity scores were calculated. Alpha diversity scores are shown by mean +/− standard deviation over 10 random subsamples.
DOI: 10.6084/m9.figshare.13725339.v1
title: Additional file 3 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 3: Supplementary Table 2: Statistics for 16s rRNA amplicon sequencing. The number of raw read pairs, adapter-trimmed read pairs, and unique OTUs identified by QIIME2 for each sample are shown.
DOI: 10.6084/m9.figshare.13725342
title: Additional file 4 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 4: Supplementary Table 3: OTU-level annotation and counts. For each unique OTU identified by QIIME2, complete annotation assigned from SILVA and counts for each individual sample are shown.
DOI: 10.6084/m9.figshare.13725345.v1
title: Additional file 5 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 5: Supplementary Table 4: Core microbiome shared between clean and standard conditions. Relative abundance (%) of core microbiome members shared between clean and standard housing conditions for adult, ii) tadpole, and iii) environmental water samples. OTUs were combined at the Genus level and were identified as core microbiome members based on an average relative abundance greater than 1% in both Clean and Standard conditions. Log2FC represents the log2 fold change of abundance in the clean samples compared to that in the standard samples.
DOI: 10.6084/m9.figshare.13725342.v1
title: Additional file 4 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 4: Supplementary Table 3: OTU-level annotation and counts. For each unique OTU identified by QIIME2, complete annotation assigned from SILVA and counts for each individual sample are shown.
DOI: 10.6084/m9.figshare.13725345
title: Additional file 5 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 5: Supplementary Table 4: Core microbiome shared between clean and standard conditions. Relative abundance (%) of core microbiome members shared between clean and standard housing conditions for adult, ii) tadpole, and iii) environmental water samples. OTUs were combined at the Genus level and were identified as core microbiome members based on an average relative abundance greater than 1% in both Clean and Standard conditions. Log2FC represents the log2 fold change of abundance in the clean samples compared to that in the standard samples.
DOI: 10.6084/m9.figshare.13725339
title: Additional file 3 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 3: Supplementary Table 2: Statistics for 16s rRNA amplicon sequencing. The number of raw read pairs, adapter-trimmed read pairs, and unique OTUs identified by QIIME2 for each sample are shown.
DOI: 10.6084/m9.figshare.13725206.v1
title: Additional file 1 of Boolean implication analysis unveils candidate universal relationships in microbiome data

description: Additional file 1. List of QIITA study accession numbers used in the four different pooled datasets (main, validation datasets 1, 2 or 3).
DOI: 10.6084/m9.figshare.13725206
title: Additional file 1 of Boolean implication analysis unveils candidate universal relationships in microbiome data

description: Additional file 1. List of QIITA study accession numbers used in the four different pooled datasets (main, validation datasets 1, 2 or 3).
DOI: 10.5281/zenodo.4511455
title: Base que recopila los datos de la investigación de cómo la contaminación de la tensión superficial afecta a varias especies de gerromorfos

description: Contiene valores del tiempo de permanencia en el agua, capacidad de salir del agua y hundimientos, de tres especies de hemípteros semiacuáticos de dos ríos neotropicales, al ser sometidos a distintas concentraciones de aguas contaminadas con jabones.
DOI: 10.6084/m9.figshare.13725336.v1
title: Additional file 2 of The skin microbiome of Xenopus laevis and the effects of husbandry conditions

description: Additional file 2: Supplementary Table 1: Alpha diversity across the data set. Three measures of the alpha-diversity (observed diversity, Chao1 Index and Shannon Index) across the data set, representing the diversity of species within each sample. For each sample, random subsamples of 5000 OTUs were taken for each sample and alpha-diversity scores were calculated. Alpha diversity scores are shown by mean +/− standard deviation over 10 random subsamples.
DOI: 10.5519/qd.rgejfixs
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1516 records)
DOI: 10.5281/zenodo.4511511
title: Structural Characterization of LsrK as a Quorum Sensing Target and a Comparison Between X-Ray and Homology Models

description: MD simulation data related to the publication
DOI: 10.5281/zenodo.4511510
title: Structural Characterization of LsrK as a Quorum Sensing Target and a Comparison Between X-Ray and Homology Models

description: MD simulation data related to the publication
DOI: 10.6084/m9.figshare.13317809
title: Mendelian randomization highlights the causal role of normal thyroid function on blood lipid profiles

description: <b>Background:</b> The association between thyroid function and dyslipidemia has been well documented in observational studies. However, observational studies are prone to confounding, making it difficult to make causal inference and determine the direction of these associations. <b>Methods:</b> We performed a two-sample bi-directional Mendelian randomization (MR) using summary statistics from large-scale genome-wide association studies (GWASs) of thyroid stimulating hormone (TSH), free thyroxine (FT4) and blood lipids. We chose inverse variance weighted (IVW) method as main analysis, and consolidated results through various sensitivity analyses involving six different MR methods under different model specifications. We further conducted genetic correlation analysis and colocalization analysis to deeply reflect the causality. <b>Results:</b> The IVW method showed per one standard deviation (SD) increase in normal TSH was significantly associated with a 0.048 SD increase in total cholesterol (TC; <i>P</i> &lt; 0.001) and a 0.032 SD increase in low-density lipoprotein cholesterol (LDL; <i>P</i> = 0.021). Per one SD increase in normal FT4 was significantly associated with a 0.056 SD decrease in TC (<i>P</i> = 0.014) and a 0.072 SD decrease in LDL (<i>P</i> = 0.009). Neither TSH nor FT4 showed causal associations with high-density lipoprotein cholesterol (HDL) and triglycerides (TG). No significant causal effect of blood lipids on normal TSH or FT4 can be detected. All results were largely consistent when using several alternative MR methods, and were re-confirmed by both genetic correlation analysis and colocalization analysis. <b>Conclusions:</b> Even within reference range, higher TSH or lower FT4 are causally associated with increased TC and LDL, while no reverse causal association can be found.<br>
DOI: 10.6084/m9.figshare.13317809.v4
title: Mendelian randomization highlights the causal role of normal thyroid function on blood lipid profiles

description: <b>Background:</b> The association between thyroid function and dyslipidemia has been well documented in observational studies. However, observational studies are prone to confounding, making it difficult to make causal inference and determine the direction of these associations. <b>Methods:</b> We performed a two-sample bi-directional Mendelian randomization (MR) using summary statistics from large-scale genome-wide association studies (GWASs) of thyroid stimulating hormone (TSH), free thyroxine (FT4) and blood lipids. We chose inverse variance weighted (IVW) method as main analysis, and consolidated results through various sensitivity analyses involving six different MR methods under different model specifications. We further conducted genetic correlation analysis and colocalization analysis to deeply reflect the causality. <b>Results:</b> The IVW method showed per one standard deviation (SD) increase in normal TSH was significantly associated with a 0.048 SD increase in total cholesterol (TC; <i>P</i> &lt; 0.001) and a 0.032 SD increase in low-density lipoprotein cholesterol (LDL; <i>P</i> = 0.021). Per one SD increase in normal FT4 was significantly associated with a 0.056 SD decrease in TC (<i>P</i> = 0.014) and a 0.072 SD decrease in LDL (<i>P</i> = 0.009). Neither TSH nor FT4 showed causal associations with high-density lipoprotein cholesterol (HDL) and triglycerides (TG). No significant causal effect of blood lipids on normal TSH or FT4 can be detected. All results were largely consistent when using several alternative MR methods, and were re-confirmed by both genetic correlation analysis and colocalization analysis. <b>Conclusions:</b> Even within reference range, higher TSH or lower FT4 are causally associated with increased TC and LDL, while no reverse causal association can be found.<br>
DOI: 10.6084/m9.figshare.13317809.v3
title: Mendelian randomization highlights the causal role of normal thyroid function on blood lipid profiles

description: <b>Background:</b> The association between thyroid function and dyslipidemia has been well documented in observational studies. However, observational studies are prone to confounding, making it difficult to make causal inference and determine the direction of these associations. <b>Methods:</b> We performed a two-sample bi-directional Mendelian randomization (MR) using summary statistics from large-scale genome-wide association studies (GWASs) of thyroid stimulating hormone (TSH), free thyroxine (FT4) and blood lipids. We chose inverse variance weighted (IVW) method as main analysis, and consolidated results through various sensitivity analyses involving six different MR methods under different model specifications. We further conducted genetic correlation analysis and colocalization analysis to deeply reflect the causality. <b>Results:</b> The IVW method showed per one standard deviation (SD) increase in normal TSH was significantly associated with a 0.048 SD increase in total cholesterol (TC; <i>P</i> &lt; 0.001) and a 0.032 SD increase in low-density lipoprotein cholesterol (LDL; <i>P</i> = 0.021). Per one SD increase in normal FT4 was significantly associated with a 0.056 SD decrease in TC (<i>P</i> = 0.014) and a 0.072 SD decrease in LDL (<i>P</i> = 0.009). Neither TSH nor FT4 showed causal associations with high-density lipoprotein cholesterol (HDL) and triglycerides (TG). No significant causal effect of blood lipids on normal TSH or FT4 can be detected. All results were largely consistent when using several alternative MR methods, and were re-confirmed by both genetic correlation analysis and colocalization analysis. <b>Conclusions:</b> Even within reference range, higher TSH or lower FT4 are causally associated with increased TC and LDL, while no reverse causal association can be found.<br>
DOI: 10.17632/9492y3wkrn.1
title: Data for: Distal locking of short cephalomedullary nails decreases varus collapse in unstable intertrochanteric fractures - a biomechanical analysis

description: Biomechanical analysis of axial loading of short intramedullary nails within a non-cadaveric biomechanical specimen
DOI: 10.17632/thdk7y5hcr.1
title: Data for: Superficial Dielectric Constant(SDC) Model of Gas-Water Flow in Resonant Cavity Sensor Based on Flow Regimes
DOI: 10.6084/m9.figshare.7732427.v1
title: Animated chord diagrams of estimated migration flows from 1990-1995 to 2010-2015 based on six methods.

description: Direction of the flow is indicated by the arrowhead. The size of the flow is indicated by the width of the arrow at its base. Numbers on the outer section axis, which give the size of migration flows, are in millions of individuals per five-year period. Sector axis limits are based on maximums over all estimation methods and all five-year periods.
DOI: 10.5281/zenodo.4513775
title: Data for WRR submitted manuscript 2020WR02843

description: The provided data corresponds to the submitted manuscript to the Water Resources Research as 2020WR02843
DOI: 10.5281/zenodo.4513774
title: Data for WRR submitted manuscript 2020WR02843

description: The provided data corresponds to the submitted manuscript to the Water Resources Research as 2020WR02843
DOI: 10.5281/zenodo.4513731
title: Data for submitted publication: 'Contrasting responses of idealised and realistic simulations of shallow cumuli to aerosol perturbations'

description: Data for producing figures from the paper 'Contrasting responses of idealised and realistic simulations of shallow cumuli to aerosol perturbations', submitted to Geophyiscal Research Letters in February 2021.
description: This work used Monsoon2, a collaborative High Performance Computing facility funded by the Met Office and the Natural Environment Research Council. Funding from European Union's Horizon 2020 research and innovation programme under grant agreement No 821205 (FORCeS).
DOI: 10.6084/m9.figshare.9901151
title: Can complementary relationship models estimate actual evapotranspiration during soil freeze-thaw cycles?

description: <br>Measured daily evapotranspiration during soil freeze-thaw cycles by two lysimeters, with the size of 40 cm in depth and 31.5 cm in diameter. <br>Estimated daily evapotranspiration during soil freeze-thaw cycles by five complementary relationship models, advection-aridity (AA) model of Brutsaert and Stricker, the GG model proposed by Granger and Gray, Morton’s complementary relationship areal evapotranspiration (CRAE) model, the Han model, and Brutsaert model. <br>
DOI: 10.6084/m9.figshare.9901151.v2
title: Can complementary relationship models estimate actual evapotranspiration during soil freeze-thaw cycles?

description: <br>Measured daily evapotranspiration during soil freeze-thaw cycles by two lysimeters, with the size of 40 cm in depth and 31.5 cm in diameter. <br>Estimated daily evapotranspiration during soil freeze-thaw cycles by five complementary relationship models, advection-aridity (AA) model of Brutsaert and Stricker, the GG model proposed by Granger and Gray, Morton’s complementary relationship areal evapotranspiration (CRAE) model, the Han model, and Brutsaert model. <br>
DOI: 10.6084/m9.figshare.9901151.v1
title: Can complementary relationship models estimate actual evapotranspiration during soil freeze-thaw cycles?

description: <br>Measured daily evapotranspiration during soil freeze-thaw cycles by two lysimeters, with the size of 40 cm in depth and 31.5 cm in diameter. <br>Estimated daily evapotranspiration during soil freeze-thaw cycles by five complementary relationship models, advection-aridity (AA) model of Brutsaert and Stricker, the GG model proposed by Granger and Gray, Morton’s complementary relationship areal evapotranspiration (CRAE) model, the Han model, and Brutsaert model. <br>
DOI: 10.5281/zenodo.4513792
title: Models

description: Three building models used in the research of "Three-Dimensional Building Model Simplification Method Considering Model Mesh and Building Structure".
DOI: 10.5281/zenodo.4513791
title: Models

description: Three building models used in the research of "Three-Dimensional Building Model Simplification Method Considering Model Mesh and Building Structure".
DOI: 10.15161/oar.it/73475
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.25442/hku.13632410
title: Data from: Elected by the elite: functional constituency legislators and elections

description: Data for book chapter “Elected by the elite: functional constituency legislators and elections” in C Loh & Civic Exchange (eds), Functional Constituencies: A Unique Feature of the Hong Kong Legislative Council (Hong Kong; Hong Kong University Press, 2006) 111-142 (32 pp.).
DOI: 10.25442/hku.13632410.v1
title: Data from: Elected by the elite: functional constituency legislators and elections

description: Data for book chapter “Elected by the elite: functional constituency legislators and elections” in C Loh & Civic Exchange (eds), Functional Constituencies: A Unique Feature of the Hong Kong Legislative Council (Hong Kong; Hong Kong University Press, 2006) 111-142 (32 pp.).
DOI: 10.5281/zenodo.4501378
title: Equilibration and RAMD simulations for ligands 1 and 10 bound to PYK

description: The file 1.zip contains input files and trajectories for equilibration of the complex formed between PYK and ligand 1 (directories AMBER and NAMD1-6) and dissociation of ligand 1 from PYK using tauRAMD (directories RAMD1-6). The file 10.zip contains input files and trajectories for equilibration of the complex formed between PYK and ligand 10 (directories AMBER and NAMD1-6) and dissociation of ligand 10 from PYK using tauRAMD (directories RAMD1-6). Further details about the method can be found in the publication "Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK2" (doi: https://doi.org/10.1016/j.chembiol.2021.01.003).
DOI: 10.5281/zenodo.4501377
title: Equilibration and RAMD simulations for ligands 1 and 10 bound to PYK

description: The file 1.zip contains input files and trajectories for equilibration of the complex formed between PYK and ligand 1 (directories AMBER and NAMD1-6) and dissociation of ligand 1 from PYK using tauRAMD (directories RAMD1-6). The file 10.zip contains input files and trajectories for equilibration of the complex formed between PYK and ligand 10 (directories AMBER and NAMD1-6) and dissociation of ligand 10 from PYK using tauRAMD (directories RAMD1-6). Further details about the method can be found in the publication "Structure-kinetic relationship reveals the mechanism of selectivity of FAK inhibitors over PYK2" (doi: https://doi.org/10.1016/j.chembiol.2021.01.003).