cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/vgcb8djsj7.1
title: Supplementary Material for the Data In Brief Article entitled "Coffee fermentation process in northern Colombia: Temporal shotgun metagenomics dataset"

description: This dataset presents the relative abundance of 595 bacterial and 156 fungal genera identified in the coffee fermentation process in the Sierra Nevada of Santa Marta (SNSM) in Colombia using Illumina-based amplicon sequencing.
DOI: 10.17632/vv2wt5rm79.1
title: Molecular variation and carbon isotopic fractionation during gas desorption of terrestrial shale: A case study from Xiahuayuan Formation in the Xuanhua Basin, North China:supplementary data

description: The data including the bulk rock parameters of Xiahuayua terrestrial shale and geochemical parameters of gas samples collected during field desorption experiments.
DOI: 10.17632/ydwcx9yhpp.2
title: Kim et al. 2021

description: Abstract: Conserved ATP-dependent chromatin remodelers establish and maintain genome-wide chromatin architectures of regulatory DNA during cellular lifespan, but the temporal interactions between remodelers and chromatin targets have been obscure. We performed live-cell single-molecule tracking for RSC, SWI/SNF, CHD1, ISW1, ISW2, and INO80 remodeling complexes in budding yeast and detected hyperkinetic behaviors for chromatin-bound molecules that frequently transition to the free state for all complexes. Chromatin-bound remodelers display notably higher diffusion than nucleosomal histones, and strikingly fast dissociation kinetics with 4-7 s mean residence times. These enhanced dynamics require ATP binding or hydrolysis by the catalytic ATPase, uncovering an additional function to its established role in nucleosome remodeling. Kinetic simulations show that multiple remodelers can repeatedly occupy the same promoter region on a timescale of minutes, implicating an unending ‘tug-of-war’ that controls a temporally shifting window of accessibility for the transcription initiation machinery. File Descriptions: SMT datasets: Filenames include information about: “factor name_HALO”_”biological replicate”_”laser power”_”frame rate”_”movie number” [i.e. STH1_HALO_WT_Rep1_90mW_10ms_1] .mat files are raw output files from tracking software DiaTrack 3.04, and contains trajectory information (X coordinate, Y coordinate, intensity, goodness of fit, etc.) from each movie. .csv files contain information about trajectory ID, frame number, x coordinate, and y coordinate, for all masked trajectories ≥ 3 frames (no skipping allowed) merged from all biological replicates. Matlab scripts: Analysis of HMM-classified trajectories This repo contains custom scripts for analyzing and quantifying HMM-classified trajectories by vbSPT (output file from 'Batch_vbSPT_classify.m'). Most analysis are done using MATLAB script, with the exception to 'subclassify DCoef' folder which requires running a shell script and an R Script using the 'Sojourner' package. PRISM was used for plotting the results. Each subfolder contains different analysis with its own README file and can be run independently of each other in any order.
DOI: 10.5281/zenodo.4699520
title: Datasets for Performance Comparison of kNN and GD

description: These datasets are used in the project Performance Comparison of kNN and GD. It contains the fish (https://www.kaggle.com/aungpyaeap/fish-market) and employee (https://www.openml.org/d/42125) dataset.
DOI: 10.5281/zenodo.4699519
title: Datasets for Performance Comparison of kNN and GD

description: These datasets are used in the project Performance Comparison of kNN and GD. It contains the fish (https://www.kaggle.com/aungpyaeap/fish-market) and employee (https://www.openml.org/d/42125) dataset.
DOI: 10.17632/379cw2nw7r.1
title: The impact of a firm's ecological, social and governance responsibility on the cost of equity in emerging markets

description: Data set includes annual data regarding cost of equity, ESG score, Ecological score, Social score, Governance score, leverage, market capitalization, price to book ratio, Beta, country of origin, sector and industry identifications for 693 public non-financial companies from emerging markets for the time period from 2015 to 2019. Data was gathered by using Thomson Reuters Eikon. Data was used in a Master's thesis to test hypotheses regarding the impact of a firm's ESG responsibility on the cost of equity in emerging markets. The main finding of the thesis is that there is a significant negative impact of a firm's ESG responsibility on the cost of equity in emerging markets.
DOI: 10.17632/xx3zxj9cjb.4
title: Nanoscale variations in natural amorphous and nanocrystalline weathering products in mafic to intermediate volcanic terrains on Earth: Implications for amorphous detections on Mars

description: This study examined the compositions and structures of amorphous and nanocrystalline weathering products in Mars-relevant mafic to intermediate volcanic terrains altered under different climates and environments. The compositions and structures of terrestrial sedimentary amorphous and nanocrystalline materials could help constrain past weathering and diagenetic conditions on Mars, but relationships between their properties and formation conditions are still largely unknown. The tables in this data set show the individual compositions measured using TEM/EDS spot analyses, and serve as supplemental materials to figures shown in the corresponding manuscript. TEM analyses were performed using an FEI Talos F200X Scanning TEM operated at 200 kV accelerating voltage with a field emission source and a Super-X windowless energy dispersive X-ray spectroscopy (EDS) detector system with silicon drift detector technology. Elemental abundances were converted to wt.% oxide, and were normalized without Cu or C because of contribution from the TEM grids.
DOI: 10.17632/hsd2pv3k95.1
title: Rice straw chemical and nutritional composition

description: Chemical and nutritional composition of rice straw
DOI: 10.17632/38tj6t8hwc.1
title: Urban flood risk under global changes: a socio-hydrological and cellular automata approach in a Brazilian catchment - Supplementary Material

description: This data set contains supplementary material from the manuscript Urban flood risk under global changes: a socio-hydrological and cellular automata approach in a Brazilian catchment. It contains the input data to the cellular automata (CA) and the socio-hydrological model, the pictures from which were extracted the water levels used to validate the CA model, and the outputs of both models.
DOI: 10.17632/h7mhv9bt8j.1
title: Lattice Strain

description: These data related to the a investigation of lattice strain in RA phase after Q&B heat treatment
DOI: 10.17632/ktkhfzpmrr.3
title: Fresh_thick

description: Latent variables and items that assess consumers' expectations on fruit juice's refreshing and thickness attributes.
DOI: 10.17632/56nyykks7d.1
title: LDHU3_01.0440

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/gbf7r5447r.1
title: LDHU3_01.0430

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/26bcrfngth.1
title: Air Pollutants

description: The dataset was collated to see how the lockdown imposed in India changed the level of air pollutants thus enabling the air to rejuvenate.
DOI: 10.17632/rrgz8w6zxc.2
title: Lakes in Kenya data

description: Physical and chemical water parameters of different lakes in Kenya.
DOI: 10.17632/5n56x2rj8c.1
title: Coding Table - Abusive Supervision Review

description: The file contains the coding sheet for our systematic review of abusive supervision.
DOI: 10.17632/3np26pbwtd.1
title: Prolific data - Abusive supervision review

description: The data we gathered via Prolific about the base rate of abusive supervision
DOI: 10.17632/mcwkkfknwc.3
title: Data for: Barred beach profile equilibrium investigated with a process-based numerical model

description: This dataset supports the manuscript entitled Barred beach profile equilibrium investigated with a process-based numerical model.
DOI: 10.17632/mcwkkfknwc.4
title: Data for: Barred beach profile equilibrium investigated with a process-based numerical model

description: This dataset supports the manuscript entitled Barred beach profile equilibrium investigated with a process-based numerical model.
DOI: 10.17632/kb26jff2gx.1
title: Response of shallow lakes to climate change during the last 1200 yr dataset

description: This dataset contains raw information used in the paper 'Response of shallow lakes to climate change during the last 1200 yr' to build figures and diagrams. The dataset includes diatoms counting and percentage, main grain size fractions, and PCoA scores of four shallow lakes located in the Pampean region, Argentina. This research aims to identify the main drivers and mechanisms of long-term ecological change; it also attempts to identify the main climatic mechanisms behind the regional hydroclimatic variability. It was found that these lakes were initially temporary, with clear waters, and eventually, became permanent with turbid waters; we propose that the reason behind the change is an increase in precipitation that promoted an increase in water levels, lake expansion increasing lakes' fetch, and resuspension of the sediment.
DOI: 10.17632/wnh7wcwf4j.2
title: topological-change interference effect on visual working memory

description: We changed the topological of items in test array and found a topological-change interference effect on visual working memory. There were five behavior experiments. Exp.1 was basic paradigm. Exp.2 was changed test items location. Exp.3 was single-probe report paradigm. Exp.4 tested different stimulus. Exp.5 tested TCIE on different ISIs.
DOI: 10.5281/zenodo.4585496
title: Data related to sialic acids article (title: tba)

description: Data associated with Figure 3 in the article (title:tba) (doi: tba).
DOI: 10.17632/6hv4g67vb6.1
title: Impact of disease self-care, management self-efficacy and knowledge in Thais with Type 2 diabetes: A 5 year nationwide cohort study

description: In this study we examine the impact on baseline diabetes self-care, diabetes management (domain-specific) and global self-efficacy and disease knowledge on short- to medium-term achievement of clinical targets and the development of chronic type 2 diabetes complications. The project involves surveying patients disease knowledge, attitude and self-care practice from 12 hospitals from across Thailand at baseline (2020) along with their clinical characteristics such as clinical targets (such as blood glucose, pressure and ldl cholesterol) and the development of chronic complications (e.g. diabetic retinopathy, nephropathy, neuropathy). Included are the protocol, Thai and English versions of the survey instrument and the baseline data (749 patients) along with a data dictionary. Follow up data (clinical outcomes only) are scheduled to be added in 2023 and 2025.
DOI: 10.17632/vhcmvrnbd6.1
title: Nonlocal Population Sources Triggering Dinoflagellate Blooms in the Changjiang Estuary and Adjacent Seas: A Modelling Study

description: we deployed an adjoint model and a coupled physical-biological model to explore the possible nonlocal dinoflagellate population sources to the Changjiang Estuary and adjacent seas. The dataset includes all the experiment results in our study.
DOI: 10.17632/265tjt9f4m.1
title: Thermophilic lignocellulolytic microorganisms in composting

description: This data set contains the information of thermophilic bacteria and fungi isolates obtained from lignocellulose-based composting throughout the critical stages of the process, which have lignocellulose-degrading activity. The collection consists of 186 strains, including 159 bacteria and 27 fungi, for whom the specific composting stage when they were obtained, their quantity and temperature inside the composting pile at sampling time was known. Bacterial strains only had xylanolytic activity while among the fungi also cellulolytic and ligninolytic activities were found for some strains. All isolates were identified by sequencing 16S rRNA or 5.8S-ITS region for bacteria and fungi, respectively. In addition, the range of growth at temperatures between 20 and 60 °C as well as the optimal temperature for growth was determined for each isolate. Each isolate is classified as thermotolerant or thermophilic according to these traits.
DOI: 10.17632/j8kty4k475.1
title: LDHU3_01.0560

description: beta eliminating lyase; Leishmania donovani
DOI: 10.17632/p3ymm6ddcd.1
title: LDHU3_01.0580

description: long chain fatty acid CoA ligase; Leishmania donovani
DOI: 10.17632/kcvk53xvy5.1
title: LDHU3_01.0590

description: fatty acyl CoA synthetase 2; Leishmania donovani
DOI: 10.17632/cw9f9y9y26.1
title: LDHU3_01.0600

description: long chain fatty acid-CoA ligase; Leishmania donovani
DOI: 10.17632/ksnyb4w592.1
title: LDHU3_01.0610

description: long chain fatty acid-CoA ligase; Leishmania donovani
DOI: 10.5281/zenodo.4701174
title: Vision-based Neural Scene Representations for Spacecraft dataset

description: Real space datasets are scarce and often come with limited metadata to supervise the training of learning algorithms. Using synthetic data allows us to produce a large dataset in a controlled environment which eases the production of annotations. We generate the data with the 3D engine Unity using models of two different satellites: a CubeSat and the Soil Moisture and Ocean Salinity (SMOS) satellite. CubeSat is a small satellite based on a 3U CubeSat platform. It is a rectangular cuboid shaped of 0.3 x 0.3 x 0.9 m. Its main structure is made of aluminum and black PCB panels on its sides. For this satellite model, we place the camera at 1 meter to render the datasets' images. The near and far bounds are fixed at 0.1 m and 2 m. SMOS has a more complicated and elongated shape. The main platform has a cubic shape of 0.9 x 0.9 x 1.0 m with solar panels attached on two sides, each 6.5 m long. The payload is a 3-branch antenna of 3 meters each placed at 60 degrees. The structure is covered by golden and silvered foils, which are highly reflective materials. For this satellite model, we place the camera at 10 meters to render the images. The near and far bounds are fixed at 3 m and 17 m due to the solar panel length. The scene is composed of one satellite, SMOS or CubeSat, with one directional light source fixed with regards to the targeted object. The images are rendered using viewpoints sampled on a full sphere with a unified black background. The images are rendered with a resolution of 1024 x 1024 pixels. For each image, the distance to the camera, azimuth and elevation angles are saved as metadata and a depth map is rendered for testing the predicted shape. We generate training and validation sets containing resp. 5, 10, 50 and 100 images to evaluate the model during training. We also generate a test set of 100 images from different viewing directions than the ones used in the training and validation sets. This common test set will be used to evaluate our models regardless of the number of training images used.
DOI: 10.5281/zenodo.4701173
title: Vision-based Neural Scene Representations for Spacecraft dataset

description: Real space datasets are scarce and often come with limited metadata to supervise the training of learning algorithms. Using synthetic data allows us to produce a large dataset in a controlled environment which eases the production of annotations. We generate the data with the 3D engine Unity using models of two different satellites: a CubeSat and the Soil Moisture and Ocean Salinity (SMOS) satellite. CubeSat is a small satellite based on a 3U CubeSat platform. It is a rectangular cuboid shaped of 0.3 x 0.3 x 0.9 m. Its main structure is made of aluminum and black PCB panels on its sides. For this satellite model, we place the camera at 1 meter to render the datasets' images. The near and far bounds are fixed at 0.1 m and 2 m. SMOS has a more complicated and elongated shape. The main platform has a cubic shape of 0.9 x 0.9 x 1.0 m with solar panels attached on two sides, each 6.5 m long. The payload is a 3-branch antenna of 3 meters each placed at 60 degrees. The structure is covered by golden and silvered foils, which are highly reflective materials. For this satellite model, we place the camera at 10 meters to render the images. The near and far bounds are fixed at 3 m and 17 m due to the solar panel length. The scene is composed of one satellite, SMOS or CubeSat, with one directional light source fixed with regards to the targeted object. The images are rendered using viewpoints sampled on a full sphere with a unified black background. The images are rendered with a resolution of 1024 x 1024 pixels. For each image, the distance to the camera, azimuth and elevation angles are saved as metadata and a depth map is rendered for testing the predicted shape. We generate training and validation sets containing resp. 5, 10, 50 and 100 images to evaluate the model during training. We also generate a test set of 100 images from different viewing directions than the ones used in the training and validation sets. This common test set will be used to evaluate our models regardless of the number of training images used.
DOI: 10.17632/45tbyx9r3n.3
title: The list of rotifer and micro-crustacean taxa identified in the inland waters of the regions of Russian Arctic

description: The list of species of zooplankton and meiofauna contains our own findings and literature data [2-8] chiefly for the period from the 1960-s to the 2010-s (1960-2017). Our own findings were obtained by analyzing samples of zooplankton, meiobenthos, and two cores of bottom sediments that we collected once in summer. This work was undertaken within the framework of the Freshwater Circumpolar Biodiversity Monitoring Program (CBMP-Freshwater) of CAFF. The work was performed in part as Federal Tasks to the Department of Animal Ecology of the Institute of Biology of Komi Science Centre of the Ural Branch of the Russian Academy of Sciences (АААА-А17-117112850235-2) (to EF and OK), to the Institute of Biophysics of the Federal Research Center “Krasnoyarsk Science Center” of the Siberian Branch of the Russian Academy of Sciences (project No. 51.1.1) and the Siberian Federal University (project No. FSRZ-2020-0006) (to OD). The paleolimnological part of this work was supported by grant from Russian Science Foundation (project 20-17-00135). L. Frolova and G. Nigamatzyanova were supported by the subsidy allocated to Kazan Federal University for the state assignment #671-2020-0049 in the sphere of scientific activities and by the Russian Foundation for Basic Research (grant 18-05-00406). The work was partly financially supported by the RFBR grant: 20-04-00145_а (to EF). References [1] E. Fefilova, O. Dubovskaya, L. Frolova, E. Abramova, O. Kononova, G. Nigamatzyanova, I. Zuev, E. Kochanova, Biogeographic patterns of planktonic and meiobenthic fauna diversity in inland waters of the Russian Arctic. Freshwater Biology (2020), 00:1‒17. [2] A.N. Kruglova, Zooplankton of the Kola River (the Barents Sea Basin), Proceeding of Karelian Scientific Centre of RAS. 4 (2009), 85‒89. (In Russian). [3] E.S. Makartseva, Zooplankton of lakes of different landscapes of Kola Peninsula, in: V.G. Drabkova, T.D. Slepukhina (Eds), Lakes of different landscapes of Kola Peninsula. Nauka, Leningrad. (1974), 143‒179. (In Russian). [4] E.V. Borutskiy, Crustacea. Freshwater Harpacticoida, Fauna of U.S.S.R., Vol. 3(4). Academy of Sciences of USSR Press, Moscow, Leningrad. (1952), 425 pp. (In Russian). [5] Hydrobiological study and fish agriculture application in lakes of the Extreme North, A.M. Gidalevich, M.T. Chernyakova (Eds), Nauka, Moscow. (1966) (In Russian). [6] Flora and fauna of the waterbodies of the European North (case study of lakes of Bolshezemelskaya tundra), M.V. Getsen (Ed), Nauka, Leningrad. (1978), 178 pp. (In Russian). [7] N.V. Vekhov, Life cycles of copepods of the Diaptomidae family (Crustacea, Calanoida) in waterbodies of the Subarctic Region in Europe, Ekologiya 3 (1988), 54-66. (In Russian). [8] N.G. Sheveleva, Diversity of planktonic fauna of Putorana plateau water bodies, in: A.A. Romanov (Ed), Bird and animal communities of the Putorana Plateau: studies and conservation, Rosselhozakademia Press, Moscow. (2006), 239‒251. (In Russian).
DOI: 10.17632/xbsz777x3t.1
title: LDHU3_01.0640

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/szcfmx2fzy.1
title: LDHU3_01.0650

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/yd35gy9m42.1
title: LDHU3_01.0660

description: pre-mRNA processing factor 3 (PRP3)/Protein of unknown function (DUF1115); Leishmania donovani
DOI: 10.17632/npc8h4wxfn.1
title: LDHU3_01.0670

description: tricarboxylate carrier; Leishmania donovani
DOI: 10.17632/p2vyrmghyz.12
title: Dr Odysseas Kopsidas

description: BscEconomics Bsc Civil Engineering LLB Law Msc Industrial Management and Technology Msc Law and Economics PhD Industrial Management and Technology PhD Environmental Economics
DOI: 10.17632/tgngv7dkgn.3
title: Data for "A progressive and combined building simplification approach with local structure classification and backtracking strategy"

description: It is a data for paper named "A progressive and combined building simplification approach with local structure classification and backtracking strategy". Three datasets are provided. One is the original data, which is collected from an open data product named OS Open Map –Local and provided by Ordnance Survey. Another two datasets are buildings which are simplified based on the original dataset into scales of 1: 25, 000 and 1: 50, 000. The simplification approach are proposed in the paper "A progressive and combined building simplification approach with local structure classification and backtracking strategy" .
DOI: 10.17632/5mhjz63zxn.1
title: LDHU3_01.0680

description: hypothetical protein - conserved; Leishmania donovani
DOI: 10.17632/zthrtgr4nz.1
title: Data for SPOT detection

description: Data for SPOT detection. Please contact lead author (Yi CUI, yicui@stanford.edu) for access to the files.
DOI: 10.17632/p5tsv2wpmg.2
title: smFISH data of IEG expression in the dorsal striatum after acute, repeated, and challenge cocaine exposures

description: smFISH protocol was performed on14 mm tissue sections using the RNAscope Multiplex Fluorescent Reagent kit (Advanced Cell Diagnostics) according to the RNAscope Sample Preparation and Pretreatment Guide for Fresh Frozen Tissue and the RNAscope Fluorescent Multiplex Kit User Manual (Advanced Cell Diagnostics). Image acquisition was performed using a Hermes high-definition cell-imaging system with 10 0.4 NA and 40 0.75 NA objectives. Five Z-stack images were captured for each of four channels – 475/28 nm (FITC), 549/15 nm (TRITC), 648/20 nm (Cy5), and 390/18 nm (DAPI). Image processing was performed using ImageJ software. Maximum-intensity images for each channel were obtained using Maximum Intensity Z-projection. All channels were subsequently merged, and the dorsal striatum region was manually cropped from these merged images according to the Franklin and Paxinos Mouse brain atlas, Third edition. Quantification of RNA expression from images was done using the CellProfiler (McQuin et al., 2018) speckle counting pipeline. A detailed protocol is available in Gonzales et al., 2020.
DOI: 10.17632/brvpjkywhz.1
title: Datasets versiones

description: ECV Reina Sofía Hospital (Córdoba)