cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3630524_d6.v1
title: Additional file 5: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of L-type PtLecRLKs. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630560_d3.v1
title: Additional file 3: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: The fraction of the total number of genes (that a pathway consists) that was found significantly up- and/or down- regulated in each sugar compared to glucose for 66 metabolic pathways. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.c.3630560_d4.v1
title: Additional file 8: of Deciphering the signaling mechanisms of the plant cell wall degradation machinery in Aspergillus oryzae

description: Binding pockets in the structures of AoXlnR and AoAmyR with DoG score ≥ 0.8. (XLSX 10 kb)
DOI: 10.17863/cam.56420
title: Dataset for "Selective CO production from aqueous CO2 using a Cu96In4 catalyst and its integration into a bias-free solar perovskite-BiVO4 tandem device"

description: Open data supporting publication. See the Readme.txt file for more information about the dataset.
DOI: 10.6084/m9.figshare.c.3630572_d9.v1
title: Additional file 1: Table S1. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Unadjusted associations between participant characteristics and BMI across the MESA ethnic groups. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3630596_d3.v1
title: Additional file 4: of Human extraintestinal pathogenic Escherichia coli strains differ in prevalence of virulence factors, phylogroups, and bacteriocin determinants

description: Table S4. Differences in the distribution of virulence factors, E. coli phylogroups, bacteriocin production, and bacteriocin determinants between subgroups of ExPEC strains and fecal strains. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3630572_d10.v1
title: Additional file 13: Table S10. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Average BMI by genotype for the top candidate SNP in each MESA ethnic group. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3630608_d1.v1
title: Additional file 3: of Unravelling population genetic structure with mitochondrial DNA in a notional panmictic coastal crab species: sample size makes the difference

description: Dataset supporting the conclusions of this article (text file formatted as Arlequin input). Haplotypes 1-33 and 34-49 correspond to thoseÂ reported in Fratini et al. [20] and Deli et al. [21], respectively. (ARP 52 kb)
DOI: 10.6084/m9.figshare.c.3630608_d2.v1
title: Additional file 2: of Unravelling population genetic structure with mitochondrial DNA in a notional panmictic coastal crab species: sample size makes the difference

description: Pairwise Đ¤st values based on Tajima and Nei distance model. In bold are indicated significant values after 10,000 corrections. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3630572_d11.v1
title: Additional file 7: Tables S5a-b. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Unadjusted associations between participant characteristics and BMI in WHI Hispanics and African Americans. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3630596_d4.v1
title: Additional file 1: of Human extraintestinal pathogenic Escherichia coli strains differ in prevalence of virulence factors, phylogroups, and bacteriocin determinants

description: Table S1. Complete list of ExPEC strains (n = 407) characterized in this study. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3630608_d3.v1
title: Additional file 1: of Unravelling population genetic structure with mitochondrial DNA in a notional panmictic coastal crab species: sample size makes the difference

description: Variable sites among 74 mitochondrial haplotypes of P. marmoratus from Atlantic Ocean, Mediterranean and Black seas (n = 587). All haplotypes are compared with haplotype 1. *, indicates identical nucleotides; PS, parsimonious sites; aa1 and aa2, aminoacids in haplotype 1 and after mutation. Haplotypes 1-33 and 34-49 correspond to those reported in Fratini et al. [20] and Deli et al. [21], respectively. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3630524_d11.v1
title: Additional file 12: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: Transcript level of G-type PtLecRLK genes in 24 different datasets from the Populus Gene Atlas Study. RNA-seq data were collected from the Populus Gene Atlas Study in Phytozome v11.0 ( http://phytozome.jgi.doe.gov/pz/portal.html ). The transcript levels for each gene were expressed as FPKM. The excel sheet labeled as “whole_set” contains the original FPKM values from Gene Atlas. The data of four different tissues under standard condition are sorted in the data sheet labeled as “standard”. The group number is listed in the first column of standard datasheet based on Fig. 3 phylogenetic tree analysis result. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3630596_d5.v1
title: Additional file 2: of Human extraintestinal pathogenic Escherichia coli strains differ in prevalence of virulence factors, phylogroups, and bacteriocin determinants

description: Table S2. Distribution of E. coli phylogroups, virulence factors, bacteriocin producers, and the prevalence of bacteriocin determinants in ExPEC strains and fecal E. coli strains. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3630614_d1.v1
title: Additional file 2: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: List of K-means cluster analysis of connectivity genes across development during normoxia. Relative log2 fold change compared to the developmental average is provided. (XLSX 171 kb)
DOI: 10.6084/m9.figshare.c.3630614_d2.v1
title: Additional file 5: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: List of K means cluster analysis of connectivity genes across development during hypoxia, after averaging relative expression across development in both hypoxia and normoxia. Relative log2 fold change compared to the average is provided. (XLSX 257 kb)
DOI: 10.6084/m9.figshare.c.3630572_d13.v1
title: Additional file 16: Table S12. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Power estimations in MESA and WHI. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3630572_d14.v1
title: Additional file 6: Tables S4a-b. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Description of the WHI SHARe Hispanic and African American study populations. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3630614_d3.v1
title: Additional file 1: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: List of final 1270 genes for analysis (Ensembl gene ID listed). These genes were chosen based on known or likely roles in CNS connectivity development. (XLS 99 kb)
DOI: 10.6084/m9.figshare.c.3630572_d15.v1
title: Additional file 14: Table S11. of Multiethnic genome-wide association study identifies ethnic-specific associations with body mass index in Hispanics and African Americans

description: Summary of association results and LD structure analysis of TCF7L2 variants. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3630614_d4.v1
title: Additional file 9: of Temporal Dysynchrony in brain connectivity gene expression following hypoxia

description: Data sheets of connectivity genes; analyzed for unadjusted, adjusted for multiple comparisons, and FDR, across development and experimental conditions (comparing normoxia to hypoxia). (XLSX 3494 kb)
DOI: 10.6084/m9.figshare.c.3630524_d18.v1
title: Additional file 6: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: List of C-type PtLecRLK. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3630638_d5.v1
title: Additional file 1: Table S1. of Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions

description: Global metabolic analysis of Xenorhabdus bovienii strains. Description: Table of all metabolic pathways in X. bovienii and the relative completeness of each pathway. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.c.3630524_d19.v1
title: Additional file 14: of Genome-wide analysis of lectin receptor-like kinases in Populus

description: Transcript level of C-type PtLecRLK gene in 24 different datasets from the Populus Gene Atlas Study. RNA-seq data were collected from the Populus Gene Atlas Study in Phytozome v11.0 ( http://phytozome.jgi.doe.gov/pz/portal.html ). The transcript level was expressed as FPKM. The sheet labeled as “whole_set” contains the original FPKM values from Gene Atlas. The data of four different tissues under standard condition are sorted in the data sheet labeled as “standard”. (XLSX 10 kb)
DOI: 10.15468/dl.8kvtmb
title: Occurrence Download

description: A dataset containing 1276 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Plethodon cheoah Highton & Peabody, 2000)"
 ]
}

 The dataset includes 1276 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037865-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.56978
title: Research data supporting "Supporting Iterative Virtual Reality Analytics Design and Evaluation by Systematic Generation of Surrogate Clustered Datasets"

description: Virtual Reality (VR) is a promising technology platform for immersive visual analytics. However, the design space of VR analytics interface design is vast and difficult to explore using traditional A/B comparisons in controlled experiments. One factor that complicates such comparisons is the dataset. Exposing participants to the same dataset in all conditions introduces a learning effect. On the other hand, using different datasets for all experimental conditions introduces the dataset as an uncontrolled variable. In this paper we propose to rectify this by introducing a generative process for synthesizing clustered datasets for VR analytics experiments. This process generates datasets that are distinct while simultaneously allowing systematic comparisons in experiments. In addition, these datasets can also be used in an iterative design process. In a two-part experiment we demonstrate the validity of the process and demonstrate how new insights in VR-based visual analytics can be gained using synthetic datasets. Here, we are providing the Python scripts used to generate the datasets used in the above study as well as the six datasets (A, B, C, D, E, F) themselves.
DOI: 10.6084/m9.figshare.24845235.v1
title: Data from: Strog benefits of hedgerows to bats in three European winegrowing regions.csv

description: Bats provide important ecosystem services as natural predators of e.g. lepidopteran pests. Thus, it is crucial to identify ways to enhance bat populations in agricultural landscapes. It has been shown that high landscape heterogeneity can benefit bat communities in arable fields. However, up to now, the relationship between bats and the surrounding landscape within a viticultural matrix has received little attention, despite moths being major pests in viticulture. Here, we investigated how bats respond to different landscape elements in three European regions: Rhineland-Palatinate (Germany), Burgenland (Austria), and Andalusia (Spain). We recorded bat activity using passive acoustic monitoring for four nights in 94 vineyards in total. Additionally, in Germany, we recorded bat activity along transects from hedgerows up to 120 m into the vineyards to describe the change in activity with hedgerow distance. Our study suggests that hedgerows should be conserved and restored as key elements to support a higher bat activity. This would also benefit other important groups of animals such as bees and birds along with the ecosystem services they provide.
DOI: 10.6084/m9.figshare.c.3630704_d1.v1
title: MOESM1 of Extracellular vesicle proteomes reflect developmental phases of Bacillus subtilis

description: Additional file 1: Table S1. Proteins identified in sporulating (Spo) and vegetative (Veg) extra-cellular vesicles.
DOI: 10.6084/m9.figshare.c.3630704_d2.v1
title: MOESM2 of Extracellular vesicle proteomes reflect developmental phases of Bacillus subtilis

description: Additional file 2: Table S2. Differentially abundant proteins in sporulating (Spo) and vegetative (Veg) extra-cellular vesicles.
DOI: 10.17863/cam.99724
title: Research data supporting 'Effects of Twisting and Surface Finish on the Mechanical Properties of Natural Gut Harp Strings'

description: The effects of varying the twist angle and surface finishing on the mechanical properties of gut harp strings have been explored. Strings were tested over a range of twist angles from 23.5° to 58.3°, and with all four combinations of ground or unground and varnished or unvarnished surface finishing. The principal effects of varying the degree of twisting were that the breaking strength and tensile Young's modulus both fell as the twist angle was increased. Leaving the string unvarnished dramatically increased the sensitivity to changes in humidity which in turn affected the thermal tuning sensitivity and creep behaviour. Grinding the string surface prior to varnishing had no significant effect on the behaviour, but did make some difference to the thermal tuning sensitivity if the string was left unvarnished. Increasing the humidity frequently triggered episodes of additional string creep. There appeared to be a threshold effect, with the additional creep triggered when the string linear density exceeded its previous maximum. When the string was not creeping, there appeared to be a strong coupling mechanism between changes in the linear density and complementary changes in the string tension, such that there was almost no net effect on the string frequency. This behaviour was independent of the twist angle and the surface finishing, suggesting that whatever the coupling mechanism was, it was not dependent on the twisted structure of the string. This work builds on the studies reported in https://doi.org/10.3390/ma11112160 and https://doi.org/10.3390/ma10050497 This dataset contains the raw test data files; detailed test logs describing the different tests; and spreadsheets containing extracted parameter values. The Python scripts used for processing the measured data and plotting graphs of the extracted parameters are included. These scripts were written using Jupyter Notebooks. HTML exports of the scripts are also provided. As well as the data for the twist angle and surface finish studies, the data set also contains the results of various breaking strength tests, and details of the test rigs and control software used. More details are given in the README.txt files, and further details regarding the test rigs can be found at https://doi.org/10.3390/ma10050497 and https://doi.org/10.17863/CAM.9018
DOI: 10.17863/cam.8100
title: Research data supporting Bolometric detection of terahertz quantum cascade laser radiation with graphene-plasmonic antenna arrays

description: This dataset is of support of the publication Bolometric detection of terahertz quantum cascade laser radiation with graphene-plasmonic antenna arrays
DOI: 10.15468/dl.qdvtvr
title: Occurrence Download

description: A dataset containing 3321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHE",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Psilocybe (Fr.) P.Kumm., Panaeolus (Fr.) Quél., 1872, Panaeolina Maire)"
 ]
}

 The dataset includes 3321 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037866-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630728_d1.v1
title: Additional file 2: of Age patterns and transmission characteristics of hand, foot and mouth disease in China

description: Force of Infection of provinces. The age-specific force of HFMD infection for 31 provinces in China. Description of data: This data file records the age-specific force of HFMD infection that were estimated in our study. (XLS 32Â kb)
DOI: 10.6084/m9.figshare.c.3630728_d2.v1
title: Additional file 1: of Age patterns and transmission characteristics of hand, foot and mouth disease in China

description: Age proportion. The HFMD case percentage of 26 age groups for 31 provinces in China. Description of data: This data file is about the HFMD case percentage of 26 age groups for 31 provinces in China. Age groups of 1 to 10 are for ages from 0 years old to 9 years old; age groups 11 to 25 are for ages of 10–14 years old to 80–84 years old that have 5 years included in each group; age group 26 is for ages that are older than 85. Age groups 1 to 24 were used in our analysis. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3630728_d3.v1
title: Additional file 3: of Age patterns and transmission characteristics of hand, foot and mouth disease in China

description: Incidence Reported. Monthly reported HFMD cases for 31 provinces in China. Description of data: The monthly reported HFMD cases for 31 provinces in China can also be downloaded from the Data-center of China Public Health Science. (XLS 54Â kb)
DOI: 10.17863/cam.6608
title: Stramenopile multigene tree dataset

description: Supporting data regarding the construction of a 63-gene concatenated tree of all photosynthetic stramenopiles. This dataset includes: - detailed BLAST outputs for the complete protein-coding component of Phaeodactylum tricornutum, searched against complete libraries from each species incorporated into the alignment - fasta format clusters and single-gene neighbour-joining trees for 65 proteins with broad (&gt;90%) ochrophyte conservation - a concatenated 26693 aa alignment of 63 proteins for which ochrophyte sequences were verified to be monophyletic, and eight modified alignments from which fast-evolving site categories were serially deducted. A "readme" file in the main directory provides additional details as deemed appropriate.
DOI: 10.6084/m9.figshare.c.3630749_d1.v1
title: Additional file 1: of Gene expression profiles and protein-protein interaction networks in amyotrophic lateral sclerosis patients with C9orf72 mutation

description: Differentially Expressed Genes in C9orf72 patients compared to control individuals fibroblasts. (XLSX 74Â kb)
DOI: 10.17863/cam.99991
title: Research data support the article "Controlling the architecture of freeze-dried collagen scaffolds with ultrasound-induced nucleation"

description: The deposited file "sample raw data.xlsx" includes measurements of nucleation temperature and time at equilibrium of freezing collagen slurries, and structural parameters of scaffolds (average pore size, degree of anisotropy and percolation diameter). These raw data are organised into "plot data.xlsx" and used to plot Figure 7-11 in the manuscript. Micro-CT and SEM images of scaffolds at vertical and horizontal cross-sections are included.
DOI: 10.17863/cam.97038
title: Research Data Supporting "The Effect of Nb, Ta, and Ti on the Oxidation of a New Polycrystalline Ni-Based Superalloy"

description: The raw X-ray diffraction (XRD) and thermo-gravimetric analysis data (TGA) described in the manuscript are enclosed in this dataset. Scanning electron micrographs (.tif and .jpg files) included in the manuscript are provided. Energy dispersive X-ray spectroscopy data are also included (.oip file) with the relevant data files (.dat) and can be opened using the proprietary Oxford Instruments AZtec software. In addition, EDX data for supplementary information is also provided in a Microsoft Word Document (.docx).
DOI: 10.17863/cam.76224
title: Research data supporting "Quantifying the Semantic Gap Between Serial and Parallel Programming"

description: Source code for the VIA tool used to analyse applications. Please see README file for details
DOI: 10.15468/dl.mcdzzh
title: Occurrence Download

description: A dataset containing 2238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Meles meles (Linnaeus, 1758)"
 ]
}

 The dataset includes 2238 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037867-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.12742
title: Research data supporting: Contactless graphene conductivity mapping on a wide range of substrates with terahertz time-domain reflection spectroscopy

description: The data was used to produce the figures in the linked publication and it consists of the data for the individual figures.
DOI: 10.6084/m9.figshare.c.3630806_d2.v1
title: Additional file 5: of Genomic ancestry and the social pathways leading to major depression in adulthood: the mediating effect of socioeconomic position and discrimination

description: Data afr dep bmc.csv. Data base â  data afr dep bmc.csvâ  . We included our database in the csv format, in order to follow the norms of availability of data and material. (CSV 203 kb)
DOI: 10.6084/m9.figshare.c.3630812_d2.v1
title: Additional file 1: Table S1. of Time-resolved pathogenic gene expression analysis of the plant pathogen Xanthomonas oryzae pv. oryzae

description: RPKM values of RNA-Seqs of the pathogenicity-activated and control Xoo cells. (XLSX 1168Â kb)
DOI: 10.15468/dl.4d2usr
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Euphonia concinna P.L.Sclater, 1855"
 ]
}

 The dataset's 1 records were derived from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037862-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3630767_d12.v1
title: Additional file 13: of Survey of cryptic unstable transcripts in yeast

description: JAY291 Pseudo-genome Assembly. We used BLAT to find the single best hit for each JAY291 contig to the S288c genome in order to produce a pseudo-genome assembly as required by Pecan. This table lists the JAY291 contigs associated with each S288c chromosome in syntenic order. Asterisks denote contigs for which the reverse compliment sequence was used (see Methods). (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3630821_d2.v1
title: Additional file 5: Table S1. of Exploration of hydroxymethylation in Kagami-Ogata syndrome caused by hypermethylation of imprinting control regions

description: Six probes with high Î Î˛ values only in brain tissue. (XLSX 45.1 kb)
DOI: 10.6084/m9.figshare.c.3630827_d1.v1
title: Additional file 2: Table S1. of Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure

description: Differential gene expression of common genes from LIMMA and SAM methods for mutants. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3630827_d2.v1
title: Additional file 3: Table S2. of Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure

description: Differential gene expression of common genes from LIMMA and SAM methods for natural isolates. (XLSX 280 kb)