cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15134754.v1
title: Straw Experiment Dataset

description: This dataset is associated with a paper entitled, "The effectiveness and efficiency of using normative messages to reduce waste: A real world experiment" by Gabby Salazar, João Neves, Vasco Alves, Bruno Silva, Jean-Christophe Giger and Diogo Veríssimo. This dataset was collected at Zoomarine Algarve in Portugal between 7/1/2018 and 9/10/2018 (Study 1) and 6/24/2019 and 9/20/2019 (Study 2) under the supervision of João Neves. We conducted a randomized field-experiment at a marine park in Portugal to test whether different normative messages reduced visitors’ paper straw use when compared to non-normative messages. We conducted a pilot study to test six different normative messages against a control message (Study 1) and then a full study to test two normative messages against a control message (Study 2).
DOI: 10.6084/m9.figshare.19410515.v1
title: Supplementary Material for: Genetic Etiologies for Chronic Kidney Disease Revealed through Next-Generation Renal Gene Panel

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) is a major public health issue in the USA. Identification of monogenic causes of CKD, which are present in ∼10% of adult cases, can impact prognosis and patient management. Broad gene panels can provide unbiased testing approaches, which are advantageous in phenotypically heterogeneous diseases. However, the use and yield of broad genetic panels by nephrologists in clinical practice is not yet well characterized. <b><i>Methods:</i></b> Renal genetic testing, ordered exclusively for clinical purposes, predominantly by general and transplant nephrologists within the USA, was performed on 1,007 consecutive unique patient samples. Testing was performed using a commercially available next-generation sequencing-based 382 gene kidney disease panel. Pathogenic (P) and likely pathogenic (LP) variants were reported. Positive findings included a monoallelic P/LP variant in an autosomal dominant or X-linked gene and biallelic P/LP variants in autosomal recessive genes. <b><i>Results:</i></b> Positive genetic findings were identified in 21.1% (212/1,007) of cases. A total of 220 positive results were identified across 48 genes. Positive results occurred most frequently in the <i>PKD1</i> (34.1%), <i>COL4A5</i> (10.9%), <i>PKD2</i> (10.0%), <i>COL4A4</i> (6.4%), <i>COL4A3</i> (5.9%), and <i>TTR</i> (4.1%) genes. Variants identified in the remaining 42 genes comprised 28.6% of the total positive findings, including single positive results in 26 genes. Positive results in &gt;1 gene were identified in 7.5% (16/212) of cases. <b><i>Conclusions:</i></b> Use of broad panel genetic testing by clinical nephrologists had a high success rate, similar to results obtained by academic centers specializing in genetics.
DOI: 10.6084/m9.figshare.26020576.v1
title: Illumina reads of E.coli

description: The Illumina reads of E.coli used in the manuscript.
DOI: 10.6084/m9.figshare.26172568.v1
title: A latest Jurassic to Early Cretaceous syn-collisional trench sequence in central Tibet recorded the role of microcontinents in Lhasa–Qiangtang collision

description: <b>Contents of this file</b><br>Figures S1 to S8<br><b>Additional Supporting Information (Files uploaded separately)</b><br>Captions for Tables S1 to S11
DOI: 10.6084/m9.figshare.28561214.v1
title: data.xlsx

description: data for "<b>Rainfall regulation of nitrogen dynamics in ponds of agricultural and forest catchments</b>"
DOI: 10.6084/m9.figshare.5441530.v1
title: Supplementary Material for: Detection of the Peanut Allergens Ara h 2 and Ara h 6 in Human Breast Milk: Development of 2 Sensitive and Specific Sandwich ELISA Assays

description: <b><i>Background:</i></b> Little is known about breast milk as a vehicle for tolerance development or sensitization to peanuts very early in life. Thus, well-characterized and highly sensitive detection systems for the reliable determination of peanut allergens in breast milk are mandatory. <b><i>Methods:</i></b> For the quantification of the marker allergens Ara h 2 and Ara h 6 in the low nanogram per milliliter range in breast milk samples of a German cohort, sensitive and highly specific sandwich ELISAs were optimized and validated. <b><i>Results:</i></b> The Ara h 2 ELISA revealed a limit of detection (LOD) of 1.3 ng Ara h 2/mL and a quantification range of 2.3-250 ng/mL, the Ara h 6 ELISA showed an LOD of 0.7 ng/mL and a working range of 1.1-14.4 ng/mL. The assays showed no relevant cross-reactivity against other potentially cross-reactive legume, seed, and tree nut extracts (&lt;0.01%, except for Ara h 1 in the Ara h 2 ELISA &lt;0.1%). Ara h 2 was detectable in breast milk samples from 14/40 (35%) of the participants in concentrations from 2.3 to 184 ng/mL, Ara h 6 appeared in 9/40 (22.5%) of the lactating mothers between 1.1 and 9.7 ng/mL, and 1 highly positive sample with 79 ng/mL. Both allergens appeared at the same time points, but Ara h 6 in lower concentrations than Ara h 2. <b><i>Conclusions:</i></b> Sensitive and specific diagnostic tools for the determination of Ara h 2 and Ara h 6 in human breast milk were established. The kinetics of secreted Ara h 2 and Ara h 6 seem to be similar but with a difference in concentration. Follow-up investigations on their tolerogenic or sensitizing properties in breast milk become now accessible.
DOI: 10.6084/m9.figshare.23557842.v1
title: CAM5

description: Monthly mean global variables from the Community Atmosphere Model versions 5 (CAM5) model.
DOI: 10.17632/9wnd37wv7c
title: Antropo design file repository: An open-source platform to increase the anthropomorphism of the Franka Emika Panda collaborative robot

description: Antropo is designed to allow researchers to study the effect of increased anthropomorphism of the Franka Emika Panda collaborative robot on human-robot interaction. This repository presents all design files to reproduce the Antropo platform consisting of a light, camera, and sound module. The light module can be freely programmed to show the light of all colours, and with any animation, the open-source sounds presented can be used to study the effect of audio cues on interaction.
DOI: 10.17632/r8c7whh2vy
title: Lorenz Predictability Data

description: Data produced for predictability research using the high-dimensional generalization of the Lorenz system as well as the WRF model simulations.
DOI: 10.6084/m9.figshare.23551953.v1
title: 25 Nwestbladi. PFAM annotation. Illumina

description: Functional annotation of the genome of Nemertoderma westbladi sequenced with Illumina. All annotated gene models were annotated with the PFAM database.
DOI: 10.6084/m9.figshare.17701175.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 36
DOI: 10.17632/hhk32y6b22
title: LINF_100017600

description: DnaJ domain-containing protein | JDP40 | J40; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.3523505.v1
title: Appendix A. A table showing constancy percentage, C, (for species with occurrence 3.0% in the total data set consisting of 640 samples) in control plots over all years (1993–2000), in treated plots in 1993 before disturbance and in the different years after disturbance (1994–2000), within treatments over all years after disturbance, species optima for the three first axes in a DCA ordination, and in the propagule bank of the treated plots before treatment in 1993.

description: A table showing constancy percentage, C, (for species with occurrence 3.0% in the total data set consisting of 640 samples) in control plots over all years (1993–2000), in treated plots in 1993 before disturbance and in the different years after disturbance (1994–2000), within treatments over all years after disturbance, species optima for the three first axes in a DCA ordination, and in the propagule bank of the treated plots before treatment in 1993.
DOI: 10.6084/m9.figshare.5721049.v1
title: Numerical Evaluation of the Influence of Urbanization in the Convection and Precipitation Patterns in the Metropolitan Region of São Paulo

description: Abstract Studies indicate that urban areas can become Urban Heat Islands (UHI) mainly due to the lack of green areas, high emissions of air pollutants and presence of civil materials, which absorb and retain more heat for a longer time than natural, which makes the temperatures of these sites higher than the surrounding areas. The influence of convective processes in rain formation in order to modify the rainfall region are discussed in the scientific world, since that processes also depend on the local temperature. In this context, the influence of urbanization on rainfall in the metropolitan region of São Paulo (MRSP) was assessed by means of statistical methods and numerical simulations. The WRF model was used with different soil type and usage settings, namely: 1 - current urban sprawl; 2 - expanded urban area; 3 - urban sprawl replaced by native forest. The numerical simulations were performed for events in which convection played a key role in setting rainfall. The analysis of time series of precipitation has shown indications of change of pattern behavior in the MRSP mainly in the 1980s and 1990s and 2000 to the present, although it has not shown tendency to increase or decrease the average rainfall in the MRSP. The simulation results highlighted the strong influence of urbanization on atmospheric dynamics and consequently the UHI of the MRSP, culminating in severe and concentrated convective precipitation event around and inside the urban area. Simulations in which urbanization was changed to native forest, precipitation occurred, in most cases, in a more spatially distributed way and with less intensity cores.
DOI: 10.6084/m9.figshare.22573504.v1
title: TAIWAN_TILE_POPULATION

description: Data for Good Meta. High resolution population estimates for Taiwan Includes total population, men, women, women of reproductive age, elderly, youth, and children subgroups. Creative Commons Attribute International License. <br> To facilitate population data retrieval across scale, we segment spatial coverage into equal sized tiles. GPU enabled spatial join via RapidsAI was employed to assign population information with each vector tile. <br> <strong>Reference</strong>: Facebook Connectivity Lab and Center for International Earth Science Information Network - CIESIN - Columbia University. 2016. High Resolution Settlement Layer (HRSL). Source imagery for HRSL © 2016 DigitalGlobe. Accessed 7 April 2023.
DOI: 10.6084/m9.figshare.27902079.v1
title: Gene-Metab Interaction Table

description: Gene-Metab Interaction Table
DOI: 10.6084/m9.figshare.28887764
title: GNSS TEC and IVM data

description: The uploaded data include GPS and GLONASS vertical total electron content (VTEC), along with latitude, longitude, and elevation angle measurements for 21 June 2022 and 25 May 2023. The TEC data are sampled at 30-second intervals, comprising 2,880 epochs per day. The dataset is structured in three dimensions: epochs, satellites, and ground stations. Separate MATLAB .mat files are provided for each GNSS constellation.<br>The TEC data for 25 May 2023, which were used in the main manuscript figures, are provided in the following files mapped to 300 km and 450 km altitude over the Korea, Taiwan, and Japan regions:<br>GPSTEC_ipp300_20230525_Korea.mat, GPSTEC_ipp300_20230525_Taiwan.mat, GPSTEC_ipp300_20230525_Japan.mat,<br>GPSTEC_ipp450_20230525_Korea.mat, GPSTEC_ipp450_20230525_Taiwan.mat, GPSTEC_ipp450_20230525_Japan.mat<br>The TEC data for 21 June 2022, which were used in Figures S1-S3, are also provided in the same format with filenames indicating the corresponding region and altitude.<br>The FORMOSAT-7/COSMIC-2 IVM data have been uploaded as two netCDF files, <i>ivm_rocket_20220115.nc</i> and <i>ivm_rocket_20230525.nc</i>. Each file contains the following variables: IVMut, IVMlon, IVMlat, IVMalt, IVMdensity, IVMtemperature, IVMzonal, IVMparallel, IVMperpendicular, and IVMlocaltime. Specifically, IVMut denotes Universal Time (UT) in hours; IVMlon, IVMlat, and IVMalt represent longitude, latitude, and altitude (km), respectively; IVMdensity and IVMtemperature represent ion density (cm⁻³) and ion temperature (K), respectively. IVMzonal, IVMparallel, and IVMperpendicular correspond to the three components of ion drift velocity relative to the magnetic field lines. IVMlocaltime represents the local time (hours).
DOI: 10.6084/m9.figshare.28887764.v1
title: IVM data

description: The FORMOSAT-7/COSMIC-2 IVM data have been uploaded as two netCDF files, <i>ivm_rocket_20220115.nc</i> and <i>ivm_rocket_20230525.nc</i>. Each file contains the following variables: IVMut, IVMlon, IVMlat, IVMalt, IVMdensity, IVMtemperature, IVMzonal, IVMparallel, IVMperpendicular, and IVMlocaltime. Specifically, IVMut denotes Universal Time (UT) in hours; IVMlon, IVMlat, and IVMalt represent longitude, latitude, and altitude (km), respectively; IVMdensity and IVMtemperature represent ion density (cm⁻³) and ion temperature (K), respectively. IVMzonal, IVMparallel, and IVMperpendicular correspond to the three components of ion drift velocity relative to the magnetic field lines. IVMlocaltime represents the local time (hours).
DOI: 10.6084/m9.figshare.15015762.v1
title: Equine-TB-EALE-23

description: Equine-TB-EALE
DOI: 10.6084/m9.figshare.24146814.v1
title: EBSCO-eBooks-Academic-Collection-Title-List-Worldwide.xlsx

description: EBSCO-eBooks-Academic-Collection-Title-List-Worldwide
DOI: 10.6084/m9.figshare.27616791.v1
title: hArtery data_ train and test

description: hArtery
DOI: 10.6084/m9.figshare.5634250
title: Keyhole: Equal signs as bridges between the phenomenological and theoretical dimensions

description: Physics is a peculiar way to reason about the world that often makes the invisible visible. If one aims at understanding what physics is about, recognise how experimental measurements and mathematical reasoning are intertwined is essential. In this work we exemplify such entanglement by analysing three case studies. In the first one, the explanation of the Hall effect underlines how we indirectly penetrate into the microscopic structure of a wire and manage to evaluate the number of charged particles per unit volume inside it from a set of macroscopic measurements. The second case shows how our reasoning allows us to determine the radius of a hydrogen atom from the experimental measure of the atom's binding energy. The third example comes from kinetic gas theory and illustrates how it is possible to estimate the number of gas particles per unit volume from the experimental values of pressure and temperature. These three case studies show that the equal sign of certain equations can be seen as a bridge (keyhole) connecting the empirical and theoretical dimensions. We argue that epistemological reflections should be an essential part of science education if we aim at delivering an authentic picture of the nature of physics.
DOI: 10.6084/m9.figshare.7376006.v1
title: WikiConv - Greek

description: The Greek Fragment of the WikiConv dataset. See: https://arxiv.org/abs/1810.13181 <br>Abstract: We present a corpus that encompasses the complete history of conversations between contributors to Wikipedia, one of the largest online collaborative communities. By recording the intermediate states of conversations---including not only comments and replies, but also their modifications, deletions and restorations---this data offers an unprecedented view of online conversation. This level of detail supports new research questions pertaining to the process (and challenges) of large-scale online collaboration. We illustrate the corpus' potential with two case studies that highlight new perspectives on earlier work. First, we explore how a person's conversational behavior depends on how they relate to the discussion's venue. Second, we show that community moderation of toxic behavior happens at a higher rate than previously estimated. Finally the reconstruction framework is designed to be language agnostic, and we show that it can extract high quality conversational data in both Chinese and English.<br>
DOI: 10.21233/xyz5-ak64
title: Okayama Prefecture ostracode surface sample dataset

description: Raw data for the Okayama Prefecture ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.12623552.v1
title: Supplementary Material for: The Protein Translocation Defect of MCT8<sup>L291R</sup> Is Rescued by Sodium Phenylbutyrate

description: <b><i>Introduction:</i></b> The monocarboxylate transporter 8 (MCT8; SLC16A2) is a specific transporter for thyroid hormones. MCT8 deficiency, formerly known as the Allan-Herndon-Dudley syndrome, is a rare genetic disease that leads to neurological impairments and muscle weakness. Current experimental treatment options rely on thyromimetic agonists that do not depend on MCT8 for cellular uptake. Another approach comes from studies with the chemical chaperone sodium phenylbutyrate (NaPB), which was able to stabilize MCT8 mutants having protein folding defects in vitro. In addition, NaPB is known as a compound that assists with plasma membrane translocation. <b><i>Objective:</i></b> The pathogenic MCT8<sup>L291R</sup> leads to the same severe neurological impairments found for other MCT8-deficient patients but, unexpectedly, lacks alterations in plasma 3,3′,5-triiodothyronine (T<sub>3</sub>) levels. Here we tried to unravel the underlying mechanism of MCT8 deficiency and tested whether the pathogenic MCT8<sup>L291R</sup> mutant responds to NaPB treatment. Therefore, we overexpressed the mutant in Madin-Darby canine kidney cells in the human choriocarcinoma cell line JEG1 and in COS7 cells of African green monkey origin. <b><i>Results:</i></b> In our recent study we describe that the MCT8<sup>L291R</sup> mutation most likely leads to a translocation defect. The pathogenic mutant is not located at the plasma membrane, but shows overlapping expression with a marker protein of the lysosome. Mutation of the corresponding amino acid in murine Mct8 (Mct8<sup>L223R</sup>) displays a similar effect on cell surface expression and transport function as seen before for MCT8<sup>L291R</sup>. NaPB was able to correct the translocation defect of MCT8<sup>L291R</sup>/Mct8<sup>L223R</sup> and restored protein function by increasing T<sub>3</sub> transport activity. Furthermore, we detected enhanced mRNA levels of wild-type and mutant <i>MCT8/Mct8</i> after NaPB treatment. The increase in mRNA levels could be an explanation for the positive effect on protein expression and function detected for wild-type MCT8. <b><i>Conclusion:</i></b> NaPB is not only suitable for the treatment of mutations leading to misfolding and protein degradation, but also for a mutant wrongly sorted inside a cell which is otherwise functional.
DOI: 10.17632/468fyk5kmp
title: Financial Openness, Capital Accumulation, and Productivity in Emerging and Developing Economies

description: This folder contains all necessary files to replicate the findings presented in the paper “Financial Openness, Capital Accumulation, and Productivity in Emerging and Developing Economies. Damasceno, A. O. and D. R. Guedes.2024. ECONOMIC MODELLING”. Ensure that you reference this data if it is used for other purposes.
DOI: 10.4121/19142582.v3
title: Grid data for reactive nitrogen losses from rice paddies in China

description: Literature dataset.xlsx refers to the dataset we collected for model establishment.Nr loss.xlsx refers to grid data of reactive nitrogen losses from rice paddies in China that obtained by established data-driven models.
DOI: 10.6084/m9.figshare.20337844.v1
title: Recognizing deformation origins: a review of deformation structures and hypothesis on the perspective of sediment consolidation

description: Key information on sedimentary or tectonic events is recorded in deformation structures formed in unlithified and lithified sediments. Disputes about the classification and identification of the two types of deformation have become increasingly relevant. The present study systematically summarizes, based on consolidation states, the genetic mechanisms of deformation. Consolidation conditions may affect deformation patterns and morphology; this can be a clue to distinguish soft-sediment deformation from tectonic deformation. Liquefaction is a typical state of unconsolidated sediment and can create clastic dikes, liquefied breccia, convolute laminae, load cast, and water-escape structures. Synsedimentary faults may be formed in weakly consolidated sediments. Most deformation structures of lithified sediments are large-scale folds and faults, but small-scale structures – especially microfolds – are difficult to distinguish from slump folds. Tectonic folds can be formed in different strata and induced by tectonic events; they differ from slump folds in morphology, distribution, and related structures. We demonstrated that consideration of liquefaction, folds in different strata – matched with the regional geological regime, related deformation structures, and micro-deformation structures – can be clues to the identification of deformation origins.
DOI: 10.6084/m9.figshare.1608863.v1
title: Breast cancer in New York State, by ZIP code, 1993-1997

description: This is one of four collections of cancer rate maps by ZIP code in New York State published in 2000 (breast, colorectal, lung) and 2001 (prostate) by the New York State Department of Health as part of the Cancer Surveillance Improvement Initiative. At some point they were removed from the public web site and do not appear to have been otherwise archived online.
DOI: 10.6084/m9.figshare.19672056.v1
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serve as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single tube-Long Fragment Read (stLFR) technology. The assembly lengths ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 27 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences, which contained 583 to 602 genes in each of the four genomes. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.3528443.v1
title: Appendix C. A table showing the number of published references and total number of lines used in the meta-analysis for each combination of predator hunting mode, habitat domain, and taxonomic class.

description: A table showing the number of published references and total number of lines used in the meta-analysis for each combination of predator hunting mode, habitat domain, and taxonomic class.
DOI: 10.6084/m9.figshare.12462092.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-37067 to JVASP-38845)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.19726807.v1
title: HIDSAG: Hyperspectral Image Database for Supervised Analysis in Geometallurgy - GEOMET data

description: GEOMET (GMET) contains 146 samples with 1 measurements each. Contains 5 geometallurgical variables.