cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4224192.v1
title: Twelve tips for turning quality assurance data into undergraduate teaching awards: A quality improvement and student engagement initiative

description: Data on teaching awards in undergraduate medical education are sparse. The benefits of an awards system may seem obvious at first glance. However, there are also potential problems relating to fairness, avoidance of bias, and alignment of the awards system with a wider strategy for quality improvement and curriculum development. Here, we report five- year single center experience with establishing undergraduate teaching awards in a large academic teaching hospital. Due to lack of additional funding we based our awards not on peer review but mainly on existing and very comprehensive quality assurance (QA) data. Our 12 tips describe practical points but also pitfalls with awards categories and criteria, advertising and disseminating the awards, the actual awards ceremony and finally embedding the awards in the hospital’s wider strategy. To be truly successful, teaching awards and prizes need to be carefully considered, designed and aligned with a wider institutional strategy of rewarding enthusiastic educators.
DOI: 10.6084/m9.figshare.4224177
title: Text Mining - RDataMining.com: R and Data Mining

description: 100 tweets (or all tweets if fewer thann 100 from the user time line of @rdatamining
DOI: 10.6084/m9.figshare.4224177.v1
title: Text Mining - RDataMining.com: R and Data Mining

description: 100 tweets (or all tweets if fewer thann 100 from the user time line of @rdatamining
DOI: 10.6084/m9.figshare.4224135
title: [dataset] Accessibility and Update status of published software: Benefits and missed opportunities

description: The two tables contain data of software packages published in <i>Molecular Ecology Resource </i>(MER) from 2001 to 2015, and in BMC Bioinformatics (2014). These data sets are part of an analysis under the title stated above.
DOI: 10.6084/m9.figshare.4224132
title: master chart.xlsx

description: <b>Differentiating secondary from primary dengue using IgG to IgM ratio in early dengue: An observational hospital based clinico-serological study from North India.</b>
DOI: 10.6084/m9.figshare.4224132.v1
title: master chart.xlsx

description: <b>Differentiating secondary from primary dengue using IgG to IgM ratio in early dengue: An observational hospital based clinico-serological study from North India.</b>
DOI: 10.6084/m9.figshare.4224135.v1
title: [dataset] Accessibility and Update status of published software: Benefits and missed opportunities

description: The two tables contain data of software packages published in <i>Molecular Ecology Resource </i>(MER) from 2001 to 2015, and in BMC Bioinformatics (2014). These data sets are part of an analysis under the title stated above.
DOI: 10.6084/m9.figshare.4223907
title: SHO data for publication.xlsx

description: <br>With the number of threatened species increasing globally, conservation breeding is vitally important now more than ever. However, no previous peer-reviewed study has attempted to determine how the varying conditions across zoos have influenced breeding by an extinct-in-the-wild species. We therefore used questionnaires and studbook data to evaluate the influence of husbandry practices and enclosure design on scimitar-horned oryx (<i>Oryx dammah</i>) breeding success, at the herd level. The data address various aspects of enclosure design and husbandry practice for 29 EEP institutions for the species.
DOI: 10.6084/m9.figshare.4223907.v1
title: SHO data for publication.xlsx

description: <br>With the number of threatened species increasing globally, conservation breeding is vitally important now more than ever. However, no previous peer-reviewed study has attempted to determine how the varying conditions across zoos have influenced breeding by an extinct-in-the-wild species. We therefore used questionnaires and studbook data to evaluate the influence of husbandry practices and enclosure design on scimitar-horned oryx (<i>Oryx dammah</i>) breeding success, at the herd level. The data address various aspects of enclosure design and husbandry practice for 29 EEP institutions for the species.
DOI: 10.17608/k6.auckland.4223904
title: Lightspeed Customer Journey Mapping

description: A lightweight set of tools and a process to capture customer experience, and map service processes from a customer centric point of view.
DOI: 10.4225/03/58bfbd11a94a2
title: Anonymous Storyteller 10: stories about the adoption experience in Australia

description: This story is part of the History of Adoption, a four year national research project funded by the Australian Research Council, 2009-2012. <br>Contributors: Monash University. Faculty of Arts. School of Philosophical, Historical and International Studies ; History of Adoption Project ; Quartly, Marian.<br>Coverage: QLD 1940s <br>Rights: Copyright 2010. Monash University. Faculty of Arts. History of Adoption Project
DOI: 10.4225/03/582504e73c7a0
title: Data from: The trans-generational impact of population density signals on host-parasite interactions

description: <b>When using this data, please cite the original publication:</b><br>Michel, J., D. Ebert, and M. D. Hall. 2016. The trans-generational impact of population density signals on host-parasite interactions. BMC Evol Biol 16:254. <br><b>Files in this package:</b><br>Title: michel-et-al-data-control.csvDescription: Life-history data for the effects of host genotype, and density manipulation on the life-history characteristics of unexposed, control animals.<br>Title: michel-et-al-data-infection-rates.csvDescription: Infection success of animals under the direct and maternal influence of low- and high-density manipulations.<br>Title: michel-et-al-data-disease-outcomes.csvDescription: Spore loads, body size and fecundity for infected animals under the direct and maternal influence of low- and high-density manipulations.<br>
DOI: 10.6084/m9.figshare.4223856
title: The impact of group size on welfare indicators of ewes during pregnancy

description: Dataset of serum cortisol concentracion, body condition score, behaviour and positions of pregnant ewes at different time points during pregnancy<br>
DOI: 10.6084/m9.figshare.4223856.v1
title: The impact of group size on welfare indicators of ewes during pregnancy

description: Dataset of serum cortisol concentracion, body condition score, behaviour and positions of pregnant ewes at different time points during pregnancy<br>
DOI: 10.6084/m9.figshare.4223811
title: FreeSurfer reconstruction of the MNI152 ICBM2009c asymmetrical non-linear atlas

description: Wed Oct 26 03:50:18 PDT 2016/scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dir/ICBM2009c_fs6/opt/freesurfer/bin/recon-all-s ICBM2009c_fs6 -i /scratch/users/chrisgor/ICBM2009c_freesurfer/mni_icbm152_t1_tal_nlin_asym_09c.nii.gz -all -openmp 16 -sd /scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dir/subjid ICBM2009c_fs6setenv SUBJECTS_DIR /scratch/users/chrisgor/ICBM2009c_freesurfer/subjects_dirFREESURFER_HOME /opt/freesurferActual FREESURFER_HOME /opt/freesurferbuild-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-v6-beta-20161019-e582155Linux sh-0-28.local 2.6.32-573.12.1.el6.x86_64 #1 SMP Tue Dec 15 21:19:08 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
DOI: 10.6084/m9.figshare.4223799
title: RL1-10.fas

description: Ten samples (RL1 to RL10), encompassing 9.6 years of chronic HCV genotype 4a infection, from a single, treatment-naive patient were subjected to pyrosequencing analysis. <br><br>
DOI: 10.6084/m9.figshare.4223739
title: Do Water Level Fluctuations Influence Production of Walleye and Yellow Perch Young-of-the-Year in Large Northern Lakes?

description: Many ecological processes depend on the regular rise and fall of water levels (WLs), and artificial manipulations to WL regimes can impair important ecosystem services. Previous research has suggested that differences in WL between late summer and early spring may alter the suitability of shoals used by Walleyes <i>Sander vitreus</i> for spawning. Other species, such as the Yellow Perch <i>Perca flavescens</i>, are unlikely to be affected in the same way by WL fluctuations because their spawning requirements are quite different. We used 11–23 years of data from six northern Minnesota lakes to assess the effects of WL fluctuations on the abundances of young-of-the-year (age-0) Walleyes and Yellow Perch. In two lakes (Rainy Lake and Lake Kabetogama), a change in WL management occurred in 2000, after which these lakes saw increased age-0 Walleye abundance, while the other study lakes experienced decreases or no change. Rainy Lake and Lake Kabetogama also had increases in age-0 Yellow Perch, but another study lake did also. We used partial least-squares regression to assess whether WL metrics were associated with variation in age-0 Walleye and Yellow Perch abundances, but WL metrics were seldom associated with age-0 abundance for either species. Our analysis suggested a potential influence of WL regulation on age-0 Walleye abundance, but we found no evidence that early spring access to spawning shoals was the mechanism by which this occurred. Received August 19, 2015; accepted July 15, 2016 Published online November 10, 2016
DOI: 10.6084/m9.figshare.4223739.v1
title: Do Water Level Fluctuations Influence Production of Walleye and Yellow Perch Young-of-the-Year in Large Northern Lakes?

description: Many ecological processes depend on the regular rise and fall of water levels (WLs), and artificial manipulations to WL regimes can impair important ecosystem services. Previous research has suggested that differences in WL between late summer and early spring may alter the suitability of shoals used by Walleyes <i>Sander vitreus</i> for spawning. Other species, such as the Yellow Perch <i>Perca flavescens</i>, are unlikely to be affected in the same way by WL fluctuations because their spawning requirements are quite different. We used 11–23 years of data from six northern Minnesota lakes to assess the effects of WL fluctuations on the abundances of young-of-the-year (age-0) Walleyes and Yellow Perch. In two lakes (Rainy Lake and Lake Kabetogama), a change in WL management occurred in 2000, after which these lakes saw increased age-0 Walleye abundance, while the other study lakes experienced decreases or no change. Rainy Lake and Lake Kabetogama also had increases in age-0 Yellow Perch, but another study lake did also. We used partial least-squares regression to assess whether WL metrics were associated with variation in age-0 Walleye and Yellow Perch abundances, but WL metrics were seldom associated with age-0 abundance for either species. Our analysis suggested a potential influence of WL regulation on age-0 Walleye abundance, but we found no evidence that early spring access to spawning shoals was the mechanism by which this occurred. Received August 19, 2015; accepted July 15, 2016 Published online November 10, 2016
DOI: 10.6084/m9.figshare.4223718
title: Silencing of CDK2, but not CDK1, separates mitogenic from anti-apoptotic signaling, sensitizing p53 defective cells for synthetic lethality

description: Small molecule inhibitors targeting CDK1/CDK2 have been clinically proven effective against a variety of tumors, albeit at the cost of profound off target toxicities. To separate potential therapeutic from toxic effects, we selectively knocked down CDK1 or CDK2 in p53 mutated HACAT cells by siRNA silencing. Using dynamic, cell cycle wide proteome arrays, we observed minor changes in overall abundance of proteins critically involved in cell cycle transition despite profound G<sub>2</sub>/M or G<sub>1</sub>/S arrest, respectively. Employing phospho site specific analyses, we identified uncoupled mitogenic, yet pro-apoptotic signaling from counter balancing anti-apoptotic activity in CDK2 disrupted cells. Moreover, a crucial role of CDK2 activity in early serum response was observed, extending well-established roles of CDKs outside their cell cycle regulating functions. In contrast, disruption of CDK1 only marginally affected phosphorylation events of crucial signaling nodes prior to G<sub>2</sub>/S transition. The data presented here suggest that the temporal separation of pro- and anti-apoptotic pathways by selective inhibition of CDK2 disrupts coherent signaling modules and may synergize with anti-proliferative drugs, averting toxic side effects from CDK1 inhibition.
DOI: 10.6084/m9.figshare.4223718.v1
title: Silencing of CDK2, but not CDK1, separates mitogenic from anti-apoptotic signaling, sensitizing p53 defective cells for synthetic lethality

description: Small molecule inhibitors targeting CDK1/CDK2 have been clinically proven effective against a variety of tumors, albeit at the cost of profound off target toxicities. To separate potential therapeutic from toxic effects, we selectively knocked down CDK1 or CDK2 in p53 mutated HACAT cells by siRNA silencing. Using dynamic, cell cycle wide proteome arrays, we observed minor changes in overall abundance of proteins critically involved in cell cycle transition despite profound G<sub>2</sub>/M or G<sub>1</sub>/S arrest, respectively. Employing phospho site specific analyses, we identified uncoupled mitogenic, yet pro-apoptotic signaling from counter balancing anti-apoptotic activity in CDK2 disrupted cells. Moreover, a crucial role of CDK2 activity in early serum response was observed, extending well-established roles of CDKs outside their cell cycle regulating functions. In contrast, disruption of CDK1 only marginally affected phosphorylation events of crucial signaling nodes prior to G<sub>2</sub>/S transition. The data presented here suggest that the temporal separation of pro- and anti-apoptotic pathways by selective inhibition of CDK2 disrupts coherent signaling modules and may synergize with anti-proliferative drugs, averting toxic side effects from CDK1 inhibition.
DOI: 10.6084/m9.figshare.4223538
title: Eponyms as proxy_SuppFile

description: Spreadsheet with social network contacts of the authors mentioned in the paper “<b>Reconstructing historical egocentric social networks in malacology: can eponyms serve as a proxy for contacts?</b>”
DOI: 10.6084/m9.figshare.4223538.v1
title: Eponyms as proxy_SuppFile

description: Spreadsheet with social network contacts of the authors mentioned in the paper “<b>Reconstructing historical egocentric social networks in malacology: can eponyms serve as a proxy for contacts?</b>”
DOI: 10.6084/m9.figshare.4220619
title: Data from CCAB verbal fluency tests

description: Published in PLoS ONE.ABSTRACT. In verbal fluency (VF) tests, subjects articulate words in a specified category during a short test period (typically 60 s). Verbal fluency tests are widely used to study language development and to evaluate memory retrieval in neuropsychiatric disorders. Performance is usually measured as the total number of correct words retrieved. Here, we describe the properties of a computerized VF (C-VF) test that tallies correct words and repetitions while providing additional lexical measures of word frequency, syllable count, and typicality. In addition, the C-VF permits (1) the analysis of the rate of responding over time, and (2) the analysis of the semantic relationships between words using a new method, Explicit Semantic Analysis (ESA), as well as the established semantic clustering and switching measures developed by Troyer et al. (1997). In Experiment 1, we gathered normative data from 180 subjects ranging in age from 18 to 82 years in semantic (“animals”) and phonemic (letter “F”) conditions. The number of words retrieved in 90 s correlated with education and daily hours of computer-use. The rate of word production declined sharply over time during both tests. In semantic conditions, correct-word scores correlated strongly with the number of ESA and Troyer-defined semantic switches as well as with an ESA-defined semantic organization index (SOI). In phonemic conditions, ESA revealed significant semantic influences in the sequence of words retrieved. In Experiment 2, we examined the test-retest reliability of different measures across three weekly tests in 40 young subjects. Different categories were used for each semantic (“animals”, “parts of the body”, and “foods”) and phonemic (letters “F”, “A”, and “S”) condition. After regressing out the influences of education and computer-use, we found that correct-word z-scores in the first session did not differ from those of the subjects in Experiment 1. Word production was uniformly greater in semantic than phonemic conditions. Intraclass correlation coefficients (ICCs) of correct-word z-scores were higher for phonemic (0.91) than semantic (0.77) tests. In semantic conditions, good reliability was also seen for the SOI (ICC = 0.68) and ESA-defined switches in semantic categories (ICC = 0.62). In Experiment 3, we examined the performance of subjects from Experiment 2 when instructed to malinger: 38% showed abnormal (p&lt; 0.05) performance in semantic conditions. Simulated malingerers with abnormal scores could be distinguished with 80% sensitivity and 89% specificity from subjects with abnormal scores in Experiment 1 using lexical, temporal, and semantic measures. In Experiment 4, we tested patients with mild and severe traumatic brain injury (mTBI and sTBI). Patients with mTBI performed within the normal range, while patients with sTBI showed significant impairments in correct-word z-scores and category shifts. The lexical, temporal, and semantic measures of the C-VF provide an automated and comprehensive description of verbal fluency performance.<b></b>.
DOI: 10.6084/m9.figshare.4220619.v1
title: Data from CCAB verbal fluency tests

description: Published in PLoS ONE.ABSTRACT. In verbal fluency (VF) tests, subjects articulate words in a specified category during a short test period (typically 60 s). Verbal fluency tests are widely used to study language development and to evaluate memory retrieval in neuropsychiatric disorders. Performance is usually measured as the total number of correct words retrieved. Here, we describe the properties of a computerized VF (C-VF) test that tallies correct words and repetitions while providing additional lexical measures of word frequency, syllable count, and typicality. In addition, the C-VF permits (1) the analysis of the rate of responding over time, and (2) the analysis of the semantic relationships between words using a new method, Explicit Semantic Analysis (ESA), as well as the established semantic clustering and switching measures developed by Troyer et al. (1997). In Experiment 1, we gathered normative data from 180 subjects ranging in age from 18 to 82 years in semantic (“animals”) and phonemic (letter “F”) conditions. The number of words retrieved in 90 s correlated with education and daily hours of computer-use. The rate of word production declined sharply over time during both tests. In semantic conditions, correct-word scores correlated strongly with the number of ESA and Troyer-defined semantic switches as well as with an ESA-defined semantic organization index (SOI). In phonemic conditions, ESA revealed significant semantic influences in the sequence of words retrieved. In Experiment 2, we examined the test-retest reliability of different measures across three weekly tests in 40 young subjects. Different categories were used for each semantic (“animals”, “parts of the body”, and “foods”) and phonemic (letters “F”, “A”, and “S”) condition. After regressing out the influences of education and computer-use, we found that correct-word z-scores in the first session did not differ from those of the subjects in Experiment 1. Word production was uniformly greater in semantic than phonemic conditions. Intraclass correlation coefficients (ICCs) of correct-word z-scores were higher for phonemic (0.91) than semantic (0.77) tests. In semantic conditions, good reliability was also seen for the SOI (ICC = 0.68) and ESA-defined switches in semantic categories (ICC = 0.62). In Experiment 3, we examined the performance of subjects from Experiment 2 when instructed to malinger: 38% showed abnormal (p&lt; 0.05) performance in semantic conditions. Simulated malingerers with abnormal scores could be distinguished with 80% sensitivity and 89% specificity from subjects with abnormal scores in Experiment 1 using lexical, temporal, and semantic measures. In Experiment 4, we tested patients with mild and severe traumatic brain injury (mTBI and sTBI). Patients with mTBI performed within the normal range, while patients with sTBI showed significant impairments in correct-word z-scores and category shifts. The lexical, temporal, and semantic measures of the C-VF provide an automated and comprehensive description of verbal fluency performance.<b></b>.
DOI: 10.6084/m9.figshare.4220559
title: Public stigma against people with mental illness in Jimma Town, South West Ethiopia.pdf

description: Title: Public stigma against people with mental illness in Jimma town, Ethiopia. Methods: A community-based, cross-sectional, descriptive study was conducted in adult residents of Jimma town. Data were collected among 820 randomly selected residents with the interviewer-administered Community Attitudes toward the Mentally Ill (CAMI) scale. Linear regression analyses were performed to identify predictors of stigma against PWMI. Result: A total of 444 (54%) of the 820 respondents were females, and the mean (SD) age was 35 (8.5) years. The minimum and maximum possible values on each CAMI subscale were 10 and 50, respectively. The respondents had high scores for a stigmatizing attitude towards PWMI across all the subscales, as indicated by the mean (SD) scores. Conclusion: The study revealed that a negative attitude towards PWMI is widespread. Therefore, there is a need to develop strategies to fight the stigma attached to PWMI at the community level.
DOI: 10.6084/m9.figshare.4220559.v1
title: Public stigma against people with mental illness in Jimma Town, South West Ethiopia.pdf

description: Title: Public stigma against people with mental illness in Jimma town, Ethiopia. Methods: A community-based, cross-sectional, descriptive study was conducted in adult residents of Jimma town. Data were collected among 820 randomly selected residents with the interviewer-administered Community Attitudes toward the Mentally Ill (CAMI) scale. Linear regression analyses were performed to identify predictors of stigma against PWMI. Result: A total of 444 (54%) of the 820 respondents were females, and the mean (SD) age was 35 (8.5) years. The minimum and maximum possible values on each CAMI subscale were 10 and 50, respectively. The respondents had high scores for a stigmatizing attitude towards PWMI across all the subscales, as indicated by the mean (SD) scores. Conclusion: The study revealed that a negative attitude towards PWMI is widespread. Therefore, there is a need to develop strategies to fight the stigma attached to PWMI at the community level.
DOI: 10.6084/m9.figshare.4220496
title: Material flow analysis for a sustainable resource management in island ecosystems

description: The Galapagos Archipelago (Ecuador) is one of the most well-known natural sites in the world for its unique biodiversity. This sensitive ecosystem is at risk due to a problematic equilibrium between its conservation policy and development demand. To contribute to implementing integrated sustainable resource management in the Galapagos Islands, a material flow analysis (MFA) of Santa Cruz – the island with the highest anthropic pressure in the archipelago – has been performed, outlining a quantitative and qualitative assessment of the direct flow of goods throughout the system. MFA outcomes have been used to evaluate and forecast the impact of some policies and strategies on the local system, focusing in particular on fossil fuel consumption and local agricultural production. This case study stresses the need to introduce a local MFA protocol to decision-makers’ toolbox, as it provides quantitative assessments on a broad spectrum of local development issues.