cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3635597_d7
title: Additional file 3: of An integrative analysis of small molecule transcriptional responses in the human malaria parasite Plasmodium falciparum

description: PubChem Fingerprints. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3636791_d2
title: Additional file 17: Table S15. of Exploring the rice dispensable genome using a metagenome-like assembly strategy

description: Sheet 1 shows the contigs of the indica dispensable genome related to exon/intron shuffling. Sheet 2 displays the contigs of the japonica dispensable genome related to exon/intron shuffling. (XLS 3716Â kb)
DOI: 10.6084/m9.figshare.c.3639770_d1
title: Additional file 1: of Overexpression of Homer1a in the basal and lateral amygdala impairs fear conditioning and induces an autism-like social impairment

description: Table comparing parametric and non-parametric statistical outcome for selected behavioral experiments. For behavioral experiments with sample sizes of nâ
DOI: 10.6084/m9.figshare.c.3643493_d12
title: Additional file 5: Tables S3A and S3B. of Distinct gene expression program dynamics during erythropoiesis from human induced pluripotent stem cells compared with adult and cord blood progenitors

description: Both relate to Fig.Â 2. (XLSX 6267 kb)
DOI: 10.6084/m9.figshare.c.3646016_d1
title: Additional file 2: of Molecular identification of different trypanosome species and subspecies in tsetse flies of northern Nigeria

description: R code used for the multiple logistic regression analyses: file â  Isaac_et_al_additional_file_2_R_code_for_multiple_logistic_regressions.txtâ  . (TXT 7 kb)
DOI: 10.5281/zenodo.3742259
title: Data and R code for Anthropogenic stressors impact fish sensory development and survival via thyroid disruption

description: The zip document contains all the data and R code used in the manuscript "Anthropogenic stressors impact fish sensory development and survival via thyroid disruption".
DOI: 10.5281/zenodo.3742258
title: Data and R code for Anthropogenic stressors impact fish sensory development and survival via thyroid disruption

description: The zip document contains all the data and R code used in the manuscript "Anthropogenic stressors impact fish sensory development and survival via thyroid disruption".
DOI: 10.6084/m9.figshare.c.3648623_d1
title: Additional file 5: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: A brief protocol on the setting up GenSET for T3SS effector prediction customized for other gram-negative genomes. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3648623_d2
title: Additional file 3: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Top 40 predictions of T3SS effectors for Phase 1 and Phase 2 by GenSET. Each protein in the testing sets were given a value (true probability) based on the training (voting) algorithm that takes the average of the probabilities given by the five algorithms. The proteins were then ranked based on size of the averaged true probability. Only the top 40 proteins with scores of 0.5 and above are listed. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3648623_d3
title: Additional file 2: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Algorithm performance of five organisms using the filtered and unfiltered data sets for GenSET Phase 1 and Phase 2 studies. (PPV: precision value; TPR: sensitivity; SPC: specificity; AUC: area under the curve). (XLSX 1150 kb)
DOI: 10.6084/m9.figshare.c.3648623_d5
title: Additional file 6: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Positive (effectors), negative (non-effectors), and testing sets of the five organisms that we used in the GenSET studies. (ALL Tags denotes all proteins encoded in the genome; Positive Set denotes known effector proteins used for training; Negative Set denotes non-effector proteins used for training; Testing Set denotes all proteins in the bacteria minus the Positive and Negative Sets; Positives in Testing Set denotes known effector proteins included in the Testing Set). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3648623_d6
title: Additional file 4: of Computational approach to predict species-specific type III secretion system (T3SS) effectors using single and multiple genomes

description: Comparison of top 40 predictions of T3SS effectors in S. Typhimurium, E. coli, P. syringae, and S. dysenteriae by EffectiveT3, T3MM, BPBAac, and GenSET 1. EffectiveT3 program was from Arnold et al. 2009 [10]; T3MM program was from Wang et al., 2013 [16]; and BPBAac program was from Wang et al., 2011 [12]; GenSET data was from this study. (XLSX 47 kb)
DOI: 10.17862/cranfield.rd.4288373.v1
title: Multi-parameter measurements using optical fibre long period gratings for indoor air quality monitoring

description: Data underlying the results presented and discussed in:<br>Multi-parameter measurements using optical fibre long period gratings for indoor air quality monitoring<br>Jiri Hromadk, Sergiy Korposh, Matthew C. Partridge, Stephen W. James, Frank Davis, Derrick Crump, Ralph P. Tatam<br>Published in Sensors and Actuators B 2017.<br>(http://dx.doi.org/10.1016/j.snb.2016.12.050)<br>Note that the description of the instrumentation and conditions pertinent to each file are detailed within the paper. The filenames correspond to the corresponding figure in the paper figure.<br>
DOI: 10.6084/m9.figshare.c.3659060_d1
title: Additional file 1: Table S1. of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: Primers used for SuHV1 amplification. (XML 90 kb)
DOI: 10.6084/m9.figshare.c.3659060_d2
title: Additional file 2: File S2. of Pseudorabies virus infection (Aujeszky’s disease) in an Iberian lynx (Lynx pardinus) in Spain: a case report

description: Partial glycoprotein B nucleotide sequence (SuHV1) isolated from Lynx pardinus. (XML 42 kb)
DOI: 10.6084/m9.figshare.c.3659228_d1
title: Additional file 7: of Genome-wide analysis of starch metabolism genes in potato (Solanum tuberosum L.)

description: Normalized data all entities POCI 4x44k. (TXT 6594Â kb)
DOI: 10.17862/cranfield.rd.3363049.v1
title: 3D printed plastic attenuation with print speed

description: Attenuation in Ultimaker PLA Translucent plastic
samples made with 3 different layer heights at 3 different speeds, n=3. Excel file
DOI: 10.17862/cranfield.rd.3443651.v1
title: Absorbance of 3D printed microfluidic biosensor at 590nm

description: The absorbance of a 3D printed micro fluidic device at 590nm with varying concentrations of glucose and it's reaction to produce blue quinoneimine dye. The spectra were recorded with an s2000 Ocean Optics spectrophotometer and a tungsten light source.
DOI: 10.17862/cranfield.rd.3443639.v1
title: 3D printed plastic attenuation with layer height

description: Attenuation at 633 nm in 400 µm thick plastic
samples of Ultimaker PLA Translucent made with 6 different layer heights, (n=3).
DOI: 10.15161/oar.it/30556
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.4593373
title: Supplementary Data 6: Antimicrobial susceptibility values

description: <b>Supplementary Data 6: </b>Antimicrobial susceptibility values
DOI: 10.5281/zenodo.3696885
title: CNR global observation-based OMEGA3D quasi-geostrophic vertical and horizontal ocean currents (1993-2018): validation subset.

description: A subset of the Global Ocean Multi Observations OMEGA3D product is provided here for comparison with independent in situ observations and model data. OMEGA3D product has been developed by the Consiglio Nazionale delle Ricerche in the framework of the Copernicus Monitoring Environment Marine Service (https://doi.org/10.25423/cmcc/multiobs_glo_phy_w_rep_015_007). It consists of 26 year of 3D quasi-geostrophic vertical and horizontal ocean currents (January 1993-December 2018) provided over a regular grid at 1/4° horizontal resolution, with 75 non-uniformly spaced vertical levels between the surface and 1500 m depth. The subset provided here includes horizontal velocities at 15 m and 1000 m depths (that can be used for validation with independent velocity estimates from SVP drifters and Argo floats displacements, respectively) and vertical velocities at 100 m depth (for comparison with model re-analyses). OMEGA3D product is delivered with a weekly sampling (representative of each Wednesday). The velocities are obtained by solving a Q-vector formulation of the Omega equation that explicitly considers the effect of both geostrophic advection and upper layer turbulent mixing as described by KPP parameterization. Omega forcings are estimated from the CMEMS observation-based ARMOR3D temperature and salinity multi-year data and ERA-Interim surface fluxes.
DOI: 10.5281/zenodo.3696884
title: CNR global observation-based OMEGA3D quasi-geostrophic vertical and horizontal ocean currents (1993-2018): validation subset.

description: A subset of the Global Ocean Multi Observations OMEGA3D product is provided here for comparison with independent in situ observations and model data. OMEGA3D product has been developed by the Consiglio Nazionale delle Ricerche in the framework of the Copernicus Monitoring Environment Marine Service (https://doi.org/10.25423/cmcc/multiobs_glo_phy_w_rep_015_007). It consists of 26 year of 3D quasi-geostrophic vertical and horizontal ocean currents (January 1993-December 2018) provided over a regular grid at 1/4° horizontal resolution, with 75 non-uniformly spaced vertical levels between the surface and 1500 m depth. The subset provided here includes horizontal velocities at 15 m and 1000 m depths (that can be used for validation with independent velocity estimates from SVP drifters and Argo floats displacements, respectively) and vertical velocities at 100 m depth (for comparison with model re-analyses). OMEGA3D product is delivered with a weekly sampling (representative of each Wednesday). The velocities are obtained by solving a Q-vector formulation of the Omega equation that explicitly considers the effect of both geostrophic advection and upper layer turbulent mixing as described by KPP parameterization. Omega forcings are estimated from the CMEMS observation-based ARMOR3D temperature and salinity multi-year data and ERA-Interim surface fluxes.
DOI: 10.5281/zenodo.3944178
title: Local seismic tomography of the eastern Anatolia region

description: The tomography model presented in the paper "Local seismic tomography of the eastern Anatolia region" are obtained using the LOTOS code by Koulakov (2009). Here, we present the full version of the code with initial data and parameters used for calculating P and S velocity models beneath the eastern Anatolia. This version of the code is adopted for the Windows OS and contains the entire program listing and the full project structure for Microsoft Visual Studio 2010 and Intel Visual Fortran. Detailed description of the code can be found at www.ivan-art.com/science/LOTOS
description: {"references": ["Koulakov (2009) www.ivan-art.com/science/LOTOS"]}
DOI: 10.5281/zenodo.3944177
title: Local seismic tomography of the eastern Anatolia region

description: The tomography model presented in the paper "Local seismic tomography of the eastern Anatolia region" are obtained using the LOTOS code by Koulakov (2009). Here, we present the full version of the code with initial data and parameters used for calculating P and S velocity models beneath the eastern Anatolia. This version of the code is adopted for the Windows OS and contains the entire program listing and the full project structure for Microsoft Visual Studio 2010 and Intel Visual Fortran. Detailed description of the code can be found at www.ivan-art.com/science/LOTOS
description: {"references": ["Koulakov (2009) www.ivan-art.com/science/LOTOS"]}
DOI: 10.18716/nmrshiftdb2/76784
title: NMR data for InChI=1S/C10H16/c1-2-4-10-8-5-7(6-8)9(10)3-1/h7-10H,1-6H2
DOI: 10.6084/m9.figshare.c.3709306_d18
title: Additional file 8: Simulated Dataset 1. of ProteoModlR for functional proteomic analysis

description: Normalization simulated datasets â   description. Detailed description of the simulated datasets used to test ProteoModlRâ  s normalization module. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3711637_d1
title: Additional file 1: Table S1. of Genetic and epigenetic stability of oligodendrogliomas at recurrence

description: Clinical characteristics of the patient cohort. Table S2. Sequence data summary. Table S3. List of the somatic mutations in this study. (XLSX 163 kb)
DOI: 10.17862/cranfield.rd.4743118.v1
title: Linking Human and Machine - Towards Consumer - Driven Automated Manufacturing

description: We established a link between linguistic descriptors describing food preferences and product manufacturing processes. Model-based methodology was employed to translate consumer preferences into product and process specifications. The aim of the research is the large scale personalization of formulated food product manufacture where consumers are also the con-creators of the food products they wish to buy. Fuzzy set modelling was used to capture the preferences and perceptions by different group of people. Then, models were employed to established the links between such product attributes and the actual formulation parameters to make the product.
DOI: 10.17862/cranfield.rd.4743583.v1
title: Workshop Series Towards Preference Marketplace Development

description: A series of workshops have been conducted to develop a digital crowdsourcing tool. Preference marketplace is inspired from traditional stock market and prediction markets. the aim of the proposed method is to engage consumers using game mechanics in order to aggregate large and diverse group of people`s opinion to identify the most promising new product ideas and concepts. First we conducted paper based workshops to collect feedback from users. Participants engagement were very good and their feedback was very positive. After that we developed digital platform and conducted another workshops in the digital environment in order to test performance and the limitations of the online software. A real food product case study was used for the workshop.
DOI: 10.17862/cranfield.rd.4737694.v1
title: Consumer Driven New Product Development in Future Re-Distributed Models of Sustainable Production and Consumption

description: The customer as co-creator of products is a grand challenge the entire consumer products manufacturing industry is facing. The design, manufacture and delivery of mass personalized customer products are critical important for economically and sustainable production. We demonstrated a model-based methodology and manufacturing process development for large scale beverage product customization. An orange beverage has been selected as case study to show that by linking a game-like consumer facing we b application and a novel computer driven flow manufacturing system. First we obtained the target sensory attributes from consumer groups, those data rapidly translated into a new formulation recipe and its manufacturing process of a beverage that meets those needs and prototyped for that consumer group to evaluate.
DOI: 10.17862/cranfield.rd.4746904.v1
title: Survey Results Durability labelling

description: Results of a survey that look into attitudes and behaviours of people towards purchasing, use and dispose of workhorse products to design a durability label<br>
DOI: 10.17862/cranfield.rd.4746898.v1
title: Workshop Findings

description: Thematic Analysis regarding 3 workshops conducted by the RECODE Network on the Vision of RdM for the UK's consumer goods industry.
DOI: 10.17862/cranfield.rd.3695862.v1
title: Case Study Database

description: Database of Case Studies Analysed
DOI: 10.17862/cranfield.rd.4740397.v1
title: Testing and Evaluation of Preference Marketplace Web Application

description: Preference marketplace is digital crowdsourcing tool which employs game mechanics to engage consumers in order to understand their requirements and prioritise the most required product attributes and concepts. A number of case study including food and beverage products has been employed to test the performance of the platform. This platform is web application under development by the Harris Makatsoris research group. Workshops were organised by the Harris Makatsoris research group to collect data at Cranfield University.
DOI: 10.17862/cranfield.rd.3695742.v1
title: DES Simulation

description: Supportive data sets for the DES simulations. Users need Annylogic to open some of this files.
DOI: 10.17862/cranfield.rd.4746901.v1
title: Thematic Analysis - Final Roadmap

description: Complete thematic analysis to create the roadmap that sets the vision for the UK's consumer goods industry
DOI: 10.5281/zenodo.3934988
title: Going back to hotels: can risk perception push travelers away from sharing accommodations?

description: 456 surveys were collected in China, and used for data analysis.
DOI: 10.5281/zenodo.3934987
title: Going back to hotels: can risk perception push travelers away from sharing accommodations?

description: 456 surveys were collected in China, and used for data analysis.
DOI: 10.6084/m9.figshare.4769659
title: Measured pressure-elevation trajectories of bag top and bottom from Wave energy absorption by a submerged air bag connected to a rigid float

description: Measured pressure-elevation trajectories of bag top and bottom
DOI: 10.6084/m9.figshare.c.3723832_d4
title: Additional file 4: of Discovery and evolution of novel hemerythrin genes in annelid worms

description: The amino acid alignment used in analyses. The nucleotide alignment used for all subsequent analyses. (TXT 31 kb)
DOI: 10.6084/m9.figshare.c.3725017_d6
title: Additional file 2: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ  s disease: a comparison of 33 human and animal studies

description: Concordance results for different subgroups using biological pathway enrichment analysis. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3725017_d12
title: Additional file 8: of Concordance analysis of microarray studies identifies representative gene expression changes in Parkinsonâ  s disease: a comparison of 33 human and animal studies

description: Hierarchical clustering of studies based on the most highly differentially expressed genes in each study, complete linkage. (XLSX 154Â kb)
DOI: 10.17045/sthlmuni.4801627
title: Supplement for Performing contrast analysis in factorial designs: From NHST to confidence intervals and beyond. Educational and Psychological Measurement

description: Supplementary material for the articleWiens, S., & Nilsson, M. E. (2016). Performing contrast analysis in factorial designs: From NHST to confidence intervals and beyond.<i> Educational and Psychological Measurement</i>, in press. doi: 10.1177/0013164416668950. The full analysis can be found in the article.<br>Contains R scripts (created with https://www.r-project.org/) and a JASP file (created with JASP software, https://jasp-stats.org/, an alternative to SPSS and R).
DOI: 10.6084/m9.figshare.4801681
title: Matlab code fig 4 Movie S1 from Design of rigid-foldable doubly curved origami tessellations based on trapezoidal crease patterns

description: This paper presents a mathematical framework for the design of rigid-foldable doubly curved origami tessellations based on trapezoidal crease patterns that can simultaneously fit two target surfaces with rotational symmetry about a common axis. The geometric parameters of the crease pattern and the folding angles of the target folded state are determined through a set of combined geometric and constraint equations. An algorithm to simulate the folding motion of the designed crease pattern is provided. Furthermore, the conditions and procedures to design folded ring structures that are both developable and flat-foldable and stacked folded structures consisting of two layers that can fold independently or compatibly are discussed. The proposed framework has potential applications in designing engineering doubly curved structures such as deployable domes and folded cores for doubly curved sandwich structures on the aircraft.
DOI: 10.6084/m9.figshare.4805797.v1
title: Supplemental file 3 4 5.fasta

description: <em>Supplemental file 3 De novo</em> assembly of clean readSupplemental file 4 The sequences of the 105,222 genesSupplemental file 4, 5  The annotation of the 105,222 genes
DOI: 10.17862/cranfield.rd.4300256.v1
title: MaRIUS land use

description: Outputs of the IAP2 batch simulation with a range of precipitation and temperature perturbations.<br><br>See article "Dynamic response of land use and river nutrient concentration to long-term climatic changes".<br>
DOI: 10.17045/sthlmuni.4801627.v1
title: Supplement for Performing contrast analysis in factorial designs: From NHST to confidence intervals and beyond. Educational and Psychological Measurement

description: Supplementary material for the articleWiens, S., & Nilsson, M. E. (2016). Performing contrast analysis in factorial designs: From NHST to confidence intervals and beyond.<i> Educational and Psychological Measurement</i>, in press. doi: 10.1177/0013164416668950. The full analysis can be found in the article.<br>Contains R scripts (created with https://www.r-project.org/) and a JASP file (created with JASP software, https://jasp-stats.org/, an alternative to SPSS and R).
DOI: 10.6084/m9.figshare.c.3738983_d3
title: Additional file 3: of DeepCpG: accurate prediction of single-cell DNA methylation states using deep learning

description: Sequence motifs. HTML files with sequence logos and summary statistics for all cell types. (ZIP 19482Â kb)
DOI: 10.6084/m9.figshare.4878413.v1
title: Diagram samples and questions for the VLL5d-study (VLL5d:data)

description: The diagrams and questionnaires as applied in the VLL5d-study, submitted to MODELS 2017.<br><br>The file "Diagrams.zip" contains all teh diagrams used in the experiment. The File "Diagrams with Questions" contains the diagrams together with the questions asked for each of them.<br><br>The file "TowardsDiagramUnderstanding.pdf" contains the original MSc-thesis by Nick and Henrik who conducted the eye tracking sessions. It contains all the results, and very detailed descriptions.<br><br>The files with the raw data will be published after the paper has been published, prominently, at least once.<br>