cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19357300.v2
title: High-Dimensional Mediation Analysis for Selecting DNA Methylation Loci Mediating Childhood Trauma and Cortisol Stress Reactivity

description: Childhood trauma tends to influence cortisol stress reactivity through the mediating effects of DNA methylation. Houtepen et al. conducted a study to investigate the role of DNA methylation in cortisol stress reactivity and its relationship with childhood trauma. The study collected a dataset consisting of 385,882 DNA methylation loci, cortisol stress reactivity, one-dimensional score on a childhood trauma questionnaire and several covariates for 85 healthy individuals. Of great scientific interest is to identify the active mediating loci out of the 385,882 ones. Houtepen et al. conducted 385,882 linear mediation analyses, in each of which one locus was considered, and identified three active mediating loci. More recently, van Kesteren and Oberski proposed a coordinate-wise mediation filter (CMF) and applied it to the same dataset. They identified five active mediating loci. Unfortunately, the three loci identified by Houtepen et al. are completely different from the five loci identified by van Kesteren and Oberski, probably because both Houtepen et al. and van Kesteren and Oberski did not consider all loci jointly in their analyses. The high dimensional DNA methylation loci indeed necessitate new techniques for identifying active mediating loci and testing the direct and indirect effects of the early life traumatic stress on later cortisol alteration. Motivated by the contradictory results in the aforementioned two scientific works, we develop a new estimating and testing procedure, and apply it to the same dataset as that analyzed by the two works. We identify three new loci: cg19230917, cg06422529 and cg03199124, and their effect sizes and <i>p</i>-values are 321.196 (<i>p</i>-value = 0.035965), 418.173 (<i>p</i>-value = 0.000234) and 471.865 (<i>p</i>-value = 0.001691), respectively. These three loci possess both reasonably neurobiological interpretations and statistically significant effects via our proposed tests. Based on our new procedure, we further confirm that the childhood trauma does not have significant direct effects on cortisol change—it only indirectly affects cortisol through DNA methylation, and the indirect effect is negative. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22841117.v1
title: validation_dataset_disgust

description: This data was the pre-registered subjective disgust validation dataset, details see Gan et al. 2023 BioRxiv.
DOI: 10.6084/m9.figshare.29024804.v1
title: Data sets in paper review for Hybrid physical data-driven electromagnetic modeling oriented digital-twin for dynamic complex part of large end-winding

description: The data set in the paper review and some data will be cancelled if the review fails.
DOI: 10.17632/v658b79rkh
title: Chromatography Files of the Complete Mitochondrial Genome of Pyrausta phoenicealis (Lepidoptera: Crambidae)

description: This dataset contains chromatography files from Sanger sequencing results for the complete mitochondrial genome assembly of Pyrausta phoenicealis (Lepidoptera: Crambidae).
DOI: 10.6084/m9.figshare.22046504.v1
title: Genotype and phenotype data for GWAS

description: genotype and phenotype data used to perform GWAS analyses
DOI: 10.6084/m9.figshare.27179934.v1
title: <i>Pheidole megacephala</i>: an invasive ant predator that raids colonies of the red imported fire ant, <i>Solenopsis invicta</i>

description: Ants are among the most destructive and widespread invaders with astronomic economic impacts because they displace native ants and other insects, modify ecosystem functions and trophic webs, and alter nutrient cycling. Thus, they can negatively affect agriculture, cause damage to infrastructures and can have an effect on human health. Among them <i>Solenopsis invicta</i>, or the red imported fire ant, is responsible for most of these impacts, particularly in the southern USA. In this study, we show that another invasive ant, <i>Pheidole megacephala</i>, known as a predator of many insects, particularly other ants, indeed preys on some other ant species whether they are native or introduced when encountering them on foraging trails and baits. They even organize raids on colonies of other species, including those of <i>S. invicta</i>.
DOI: 10.6084/m9.figshare.4800970.v2
title: methylAnalysisDataV3.tar.gz

description: The Illumina 450k methylation data and related files required to run the workflow presented in the paper by Maksimovic et al. (2016). All of the data and additional resources are otherwise publicly available from the original sources cited in the paper but have been packaged up and made available here to facilitate execution of the R workflow. <br><br>Maksimovic J, Phipson B and Oshlack A. A cross-package Bioconductor workflow for analysing methylation array data [version 3]. F1000Research 2016, <b>5</b>:1281 <br><br>
DOI: 10.17632/75xwz2849j
title: Supplement - Dupilumab improves pruritus and skin lesions in patients with prurigo nodularis: Pooled results from two phase 3 trials (LIBERTY-PN PRIME and PRIME2)

description: Supplement - Contents:
Plain Language Summary 
Table SI. Comorbid conditions present in the medical history of 5% or more of the trial population 
Table SII. Medical history of psychiatric comorbidities in the trial population 
Table SIII. Use of concomitant prohibited medications/procedures and/or rescue medication 
Fig S1. Prurigo nodularis. LIBERTY-PN PRIME/PRIME2 Pooled – Study design 
Fig S2. Prurigo nodularis. LIBERTY-PN PRIME/PRIME2 Pooled – Patient disposition 
Fig S3. Prurigo nodularis. LIBERTY-PN PRIME/PRIME2 Pooled – Baseline demographic characteristic subgroup analyses of responders at week 24 
Fig S4. Prurigo nodularis. LIBERTY-PN PRIME/PRIME2 Pooled – Proportion of patients achieving ≥4-point reduction in WI-NRS from baseline over time 
Fig S5. Prurigo nodularis. LIBERTY-PN PRIME/PRIME2 Pooled – Efficacy on patient-reported outcomes mean change from baseline to week 24
DOI: 10.17632/kvk7bvtrcx
title: SSI data frame and scores_Towards Rural Social Sustainability

description: Data framework and Social Sustainability Index (SSI) scores of Balaheri and Soothra.
DOI: 10.25439/rmt.13244579.v2
title: Twitter readability judgements data

description: A collection of crowd-sourced (via Figure-Eight) human judgements of "English" tweet readability as assessed by participants with the following language backgrounds: Dutch, German, Mandarin, Cantonese, Spanish, Portuguese.Demographic data<br>(RMIT Approved Ethics Application SEHAPP 48-18.)<br><br> Any publications using the data should cite:<br>Jacob, P., & Uitdenbogerd, A. L. (2019). Readability of Twitter Tweets for Second Language Learners. In Proceedings of the The 17th Annual Workshop of the Australasian Language Technology Association (pp. 19-27), Meladel Mistica, Massimo Piccardi, Andrew MacKinlay (Editors).
DOI: 10.6084/m9.figshare.19692046.v1
title: Supplementary Material for: The Role of High Intensity Focused Ultrasound (HIFU) in the Treatment of Fibroadenomas: A Systematic Review

description: Introduction: Fibroadenomas are solid, mobile, and non-tender benign breast lumps, with highest prevalence amongst young women aged between 15 and 35. Symptoms can include discomfort, and they can become problematic particularly when they enlarge, resulting in many referrals for biopsies; with fibroadenomas accounting for 30-75% of the cases. Diagnosis is based on triple assessment that involves a clinical examination, ultrasound imaging and mammography, as well as core needle biopsies. Current management includes observation for 6-12 months, with the indication of definitive surgery, in cases that are older than 35 years or with fibroadenoma persistence. Serious adverse effects of surgery might include nipple areolar distortion, scarring and damage to the breast tissue, as well as the risks associated with surgery and anesthesia, making it a non-feasible option. Methods: A literature search was performed on the databases EMBASE. MEDLINE/PubMed, google scholar and Ovid, for English language papers published between 1st of January 2000 and 17th of March 2021. A structured protocol was employed to devise a comprehensive search strategy with keywords and Boolean operators defined by the research question. The keywords used for the search were ‘HIFU’, ‘High Intensity Focused Ultrasound’, ‘Fibroadenoma’, ‘Breast’, ‘Lesion’. This review was carried out in accordance with the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. Results: Recently, a thermal ablative technique, High Intensity Focused Ultrasound (HIFU), was found to be a safe, non-invasive, and technically successful alternative, having displayed promising outcomes in reducing the volume of fibroadenomas, pain experienced by patients, and the length of hospitalization. Quality of life improvement was also evidenced, exhibited by the disappearance of symptoms, and enhanced physical activity post-intervention, in addition to patients’ satisfaction with the cosmetic results and future recommendation of the procedure to other patients. Conclusion: Overall, HIFU is a well-tolerated treatment associated with low risk of complications, that can potentially include erythema, skin discolouration and bruising with the majority of these self-resolving shortly after the procedure.
DOI: 10.6084/m9.figshare.20231553.v1
title: Vulture gliding dataset

description: Dataset of vulture gliding flight tracks over a range of environmental conditions, used as the basis for "Morphological evolution of bird wings follows a mechanical sensitivity gradient determined by the aerodynamics of flapping flight" by Jonathan Rader and Tyson Hedrick; published in Nature Communications
DOI: 10.6084/m9.figshare.20329125.v1
title: UDAMP_database

description: This is the electronic version of the updated UDAMP database
DOI: 10.6084/m9.figshare.28138682.v1
title: Prevalence, Risk Factors, and Comorbidity of Prolonged Grief Disorder with PTSD and Depression: Turkish Adaptation of PG-13-R Based on DSM-5-TR

description: Prevalence, Risk Factors, and Comorbidity of Prolonged Grief Disorder with PTSD and MDD: Turkish Adaptation of PG-13-R Based on DSM-5-TR
DOI: 10.6084/m9.figshare.28623659.v5
title: Curso Genética de Conservacion

description: Sequence data and presentation used for the course Curso Genética de Conservacion, for the class on DNA barcoding and RADseq.
DOI: 10.6084/m9.figshare.28926509.v1
title: Planet-Star-Observer Geometry for Polarized Scattering in Exoplanet Atmospheres

description: This conceptual illustration depicts the geometric configuration of a star, exoplanet, and observer relevant to modeling polarized light scattering in exoplanet atmospheres. The phase angle (α) shown determines the illumination fraction and scattering angle, which are critical for predicting mid-infrared polarization signatures. Created as part of the research study "Mid-Infrared Polarization Signatures of Exoplanetary Clouds."
DOI: 10.6084/m9.figshare.7678379.v1
title: Pneumatic Lighter: a versatile tool to the interdisciplinary teaching

description: Abstract The pneumatic lighter is a device that allows to produce fire by means of rapid air compression and, when constructed with transparent acrylic tube, it is possible to observe the burning of a small sample of cotton placed in its interior. Because it is a little known instrument and whose operation calls attention we see its use in the classroom as an auxiliary tool in the significant construction of concepts of thermodynamics, both in physics and in the chemistry of the process, so that it can be used as an articulator of interdisciplinary. The many energy conversions observed in the process can also leverage interest in concepts that go beyond those restricted to thermodynamics. In particular, we report how can be made estimates of the energy released in the cotton burning process using a free software for video processing frame by frame, Tracker. We hope that this work will divulge the pneumatic lighter as a teaching tool for Physics and Chemistry, to stimulate the use of simple experiments in the classroom aiming at the significant development of knowledge and to show that the acquisition and processing of data can be shown potentially playful activity of research in classical physics already at the average level of education.
DOI: 10.25387/g3.11952324.v1
title: Supplemental Material for Wiley and Miller, 2020

description: Ragoo assembled psuedochromosomes, referenced-based mapping assembly, mapping Golden-fronted Woodpecker (Melanerpes aurifrons, PRJNA598863) contigs to Anna's Hummingbird (Calypte anna bCalAnn1_v1.p; GCA_003957555.2; Korlach et al. 2017)
DOI: 10.6084/m9.figshare.12866261.v2
title: Bioclimatic gradients and soil property trends from northernmost mainland Norway to the Svalbard archipelago. Does the arctic biome extend into mainland Norway?

description: This dataset is part of article " Bioclimatic gradients and soil property trends from Northernmost mainland Norway to the Svalbard archipelago. Does the arctic biome extend into mainland Norway? The materials and methods of sampling have been described extensively in the arcticle.
DOI: 10.6084/m9.figshare.25443268.v3
title: Supporting Information Appendix S1, S2, S3, S4 and S6

description: <b>Systematics of Apatelodidae Neumoegen & Dyar, 1894 (Lepidoptera: Bombycoidea) based on molecular and morphological data</b>
DOI: 10.6084/m9.figshare.25624803.v1
title: The chromosome-level genome assembly of Euglena gracilis

description: The InterProScan annotation of the predicted genes.
DOI: 10.6084/m9.figshare.27179961.v1
title: <b>Leveraging Artificial Intelligence to Combat Misinformation and Strengthen News Dissemination in the Digital Age</b> Raw data

description: The digital age has brought unprecedented challenges to the accuracy and reliability of news dissemination, with misinformation becoming a widespread issue across media platforms. Leveraging Artificial Intelligence (AI) offers a promising solution to address these challenges. This paper explores the potential of AI to combat misinformation while enhancing the efficiency and transparency of news dissemination. Through an interdisciplinary approach, we analyze the dual role of AI in both perpetuating and mitigating misinformation. The study presents theoretical insights into the algorithms and ethical frameworks that shape AI’s influence in news media, particularly focusing on the dangers of algorithmic biases and deepfake technologies. It also offers practical contributions by proposing innovative AI-driven tools and strategies to improve fact-checking, content verification, and the personalization of news feeds, without compromising accuracy. Additionally, the paper examines case studies that illustrate the successes and limitations of AI interventions in real-world scenarios. Ultimately, this research highlights the need for a balanced deployment of AI technologies—one that combines technical sophistication with robust ethical guidelines. By fostering collaboration between AI developers, journalists, and policymakers, the paper argues that AI can be a vital tool in creating a more informed, discerning public while restoring trust in digital media.
DOI: 10.6084/m9.figshare.7452734.v1
title: Mortality trend due to traffic accident in young in the south of Brazil

description: Abstract Background Traffic accidents are a major global public health problem with an impact on morbidity and mortality. Objective The aim of this study was to analyze the mortality trend from road accidents among young adults. Method An ecological time-series study was performed of the deaths of young (15-24 years old) in traffic accidents in the state of Parana, Brazil from 1996 to 2013. Mortality data was obtained from the Mortality Information System. Mortality rates were calculated and the trend analysis was performed through polynomial regression models. A trend was considered significant when the estimated model obtained a p-value &lt;0.05. Accidents involving tricycles were excluded from the analysis (58 cases). Results Of the 12,063 deaths from road accidents, 82.0% were male. There was a significant and growing trend of accident mortality rates involving motorcyclists and car and pick-up truck occupants, and a decreasing trend of fatal accidents involving pedestrians. The average mortality rate for accidents involving motorcyclists was 10 deaths per 100,000 residents, an increase of 1.13 per year. Accidents involving car occupants increased annually by 0.43 and accidents involving pick-up truck occupants by 0.01. Conclusion There was a significant increasing trend for fatalities of both genders, especially motorcyclists and car occupants. The pedestrian mortality trend has shown a decreasing due to their lower exposure.
DOI: 10.17632/88kb9t8my6
title: NEO IPIP 120

description: This study aimed to explain the psychometric property of IPIP-NEO-120 through its validity and reliability tests. Confirmatory Factor Analysis (CFA) and Composite Reliability was used in this analysis. This study involved 573 participants. The results showed that most of the items were valid and reliable in measuring their associated dimensions.
DOI: 10.17632/jdcbrjx3pp
title: Pax Protein Depletion in Proximal Tubules Triggers Conserved Mechanisms of Resistance to Acute Ischemic Kidney Injury

description: RNA sequencing data (bulk and single nucleus) from uninjured mutant mice with conditional Pax2 and Pax8 and a phosphoenolpyruvate carboxykinase Cre driver compared with controls.
DOI: 10.6084/m9.figshare.11374062.v2
title: U.S. Midterm Election Twitter Dataset 2018

description: This dataset includes all tweets from September 17th, 2018 until November 6th, 2018 posted by, mentioning or replying to any of the Twitter accounts, that belongs to one of the candidates who was running for the United States' House of Representatives in 2018.<br>The list of the candidate Twitter accounts are published here: https://github.com/vegetable68/Midterm-2018-candidates<br>In total, our data consists of 1.7 million tweets and 6.5 million retweets of candidates from 1 million users (including the candidate accounts).<br>The analysis of this dataset is going to appear in papers “Towards Measuring Adversarial Twitter Interactions against Candidates in the US Midterm Elections” at ICWSM 2020 and “Characterizing Twitter Users Who Engage in Adversarial Interactions against Political Candidates” at CHI 2020.<br>Contact Yiqing Hua (yiqing@cs.cornell.edu) for questions.<br>
DOI: 10.6084/m9.figshare.29090936.v4
title: The Theory of Almost Everything

description: The Theory of Almost Everything
DOI: 10.6084/m9.figshare.9248822.v3
title: Dataset of dissolved oxygen and carbonate parameters supporting the study entitled as "Emergence of summertime hypoxia and concurrent carbonate mineral suppression in the central Bohai Sea, China"

description: Between August 2011 and September 2017, eight field surveys were conducted in the central Bohai Sea, spanning all four seasons. To examine possible intra-seasonal and inter-annual variations in summertime DO depletion and concurrent carbonate mineral suppression, one July data set and two August data sets and two September data sets were investigated in this study, although these summer and/or early autumn surveys distributed over different years. During these surveys, water samples were collected at 9–37 grid stations for the measurements of DO, pH, total alkalinity (TAlk), and dissolved inorganic carbon (DIC). Most sampling stations had a water depth of 15–35 m.
DOI: 10.6084/m9.figshare.21505380.v1
title: Phylogenetic analyses - Supplemental Data - Hoang et al., 2023. Plant Cell. https://doi.org/10.1093/plcell/koad018

description: Phylogenetic analyses - Supplemental Data - supporting the findings in "<strong>The </strong><em><strong>Gynandropsis gynandra</strong></em><strong> genome provides insights into whole-genome duplications and the evolution of C4 photosynthesis in Cleomaceae", </strong>Hoang et al. 2023. Plant Cell. https://doi.org/10.1093/plcell/koad018
DOI: 10.6084/m9.figshare.4990919.v1
title: Fluctuations in coral reef fish densities after environmental disturbances on the northern Great Barrier Reef

description: The Great Barrier Reef around Lizard Island has suffered from severe tropical cyclones Ita (2014) and Nathan (2015) and a massive coral bleaching due to El Niño (2016). We compared fish density from before the disturbances to data collected after the disturbances. Overall, we recorded up to 68% declines in fish density after the environmental perturbations. Thus, environmental perturbations due to extreme climate events appear to have strong detrimental consequences for reef fish densities.
DOI: 10.6084/m9.figshare.7825655.v1
title: JAGS code for domestic-wildlife interface model from Transmission ecology of canine parvovirus in a multi-host, multi-pathogen system

description: Full model code for dog and lions CPV transmission dynamics.
DOI: 10.17632/k2p2rsh8zk
title: Temporomandibular Joint Disorders on Standard MRI

description: SPSS file of study TMJ Disorders on Standard Brain MRI (2018-2019)
DOI: 10.26180/5e28eb939d072
title: AIS_Insects - ISC.Figshare_Versions 1 and 2

description: Dataset associated with the "<i>Invasive Insects: Risks and Pathways</i>" Project. <br>Dataset to be interpreted alongside June (2019) Report by the Invasive Species Council - <i>Preliminary results and biosecurity implications</i>. <br>This unpublished dataset comprises insect species that have been reported to have an environmental impact anywhere in the world outside their native geographic range. Interpret in conjunction with Figure 1 in above report.<br> The research was conducted by the McGeoch Research Group of Monash University, led by Professor Melodie McGeoch, with contributions from: <i>Monash University</i>: Dr Chris McGrannachan, Rebecca O’Connor, David Clarke, Dr David Palmer
DOI: 10.6084/m9.figshare.25814068.v1
title: Pakistan's Banking Industry Research Data.xlsx

description: Financial data on Pakistan's banking industry.
DOI: 10.6084/m9.figshare.27542946.v1
title: Prevalence and Risk Factors of Hypertension among Young Adults: an Indonesian Basic Health Survey

description: Abstract Hypertension patients aged under 40 years have low awareness, under-diagnosis, hence, poor blood pressure control. The prevalence of undiagnosed hypertension in men and women aged 26 to 35 years is 55% and 44%, respectively. This study aimed to provide information on the prevalence and risk factors for hypertension among young adults based on the basic health survey (Riset Kesehatan Dasar; RISKESDAS) in Indonesia. Method: This cross-sectional study utilized secondary data from the RISKESDAS 2018 with a total of 140,073 subjects aged 26-35 years. The characteristics of the subjects were presented as proportion. This study performed a chi-square test and involved multivariate analysis using binary logistic regression for all parameters with p-value &lt;0.25 in the chi-square test
DOI: 10.6084/m9.figshare.28721459.v1
title: Data and analysis of the aeration rate of the OX1LP-6 apparatus (Qubit™, Kingston, Ontario, Canada)

description: This file contains the data set and mathematical analysis which enabled the determination of the 'natural' aeration rate of the OX1LP-6 apparatus (Qubit™, Kingston, Ontario, Canada) used as part of the study published in '<i>Toward a scalable modelling of photosynthetic carbon assimilation and partition during nitrogen starvation for the microalga</i><i> </i><i>Chlorella vulgaris</i><i> </i><i>NIES 227</i>'
DOI: 10.6084/m9.figshare.5123845.v1
title: Supplementary Material for: Könnten operative Eingriffe die Psychopathologie langfristig besser beeinflussen als evidenzbasierte Psychotherapie? Pro und Contra bariatrischer Chirurgie in der Adipositasbehandlung

description: Medicine