cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29041375.v1
title: Phylogenetic relationship of WRKY transcription factors in <i>Solanum</i> and potato genes in response to hormonal and biotic stresses

description: WRKY transcription factors are important regulators of plant responses to environmental stresses and hormone signaling. This study analyzes the WRKY gene family in <i>Solanum tuberosum</i> by examining the phylogenetic relationships, expression profiles, and their roles in abiotic stress and hormone responses. Phylogenetic tree was constructed using 322 WRKY genes from four <i>Solanum</i> species: <i>S. tuberosum, S. pennellii, S. pimpinellifolium</i>, and <i>S. lycopersicum</i>. The results revealed conserved and expanded WRKY genes across these species. We then studied the expression of 75 SotuWRKY genes in response to salt, drought, heat stresses, and hormone treatments (IAA, ABA, BABA, GA3, and BAP). Results showed that 19, 25, and 29 genes were regulated under salt, drought, and heat stresses, respectively. Several WRKY genes (e.g. SotuWRKY03 and SotuWRKY24) were also regulated by biotic stresses like <i>Phytophthora infestans</i> infection and hormone treatments, indicating their involvement in plant defense mechanisms. A gene co-expression network was constructed based on gene-to-gene correlations, where <i>SotuWRKY52</i> was identified as a hub gene, positively regulating six WRKY genes and negatively regulating four. These findings suggest that potato WRKY genes play key roles in regulating stress responses and hormone signaling, potentially enhancing potato resistance to stresses and diseases. This study provides new insights into WRKY transcription factors in <i>S. tuberosum</i> and other <i>Solanum</i> species.
DOI: 10.6084/m9.figshare.30578017
title: Actin depolymerization by Latrunculin B can either suppress or promote root gravitropism, depending on the developmental stages in Arabidopsis

description: Root gravitropism enables plants to optimize water and nutrient uptake, with actin filaments playing a key regulatory role. However, the effects of F-actin depolymerization on gravitropism have been inconsistent. Here, we show that actin depolymerization impacts root gravitropism in a developmentally dependent manner. In newly germinated roots, weak statolith constraint by actin means depolymerization does not significantly enhance statolith sedimentation but inhibits cell elongation on the upper root side, reducing gravitropic bending. In mature roots, stronger statolith constraint allows actin depolymerization to promote statolith sedimentation and inhibit cell elongation on the lower side, thus accelerating root bending. These findings provide new perspectives for a deeper understanding of the mechanisms underlying root gravitropism.
DOI: 10.6084/m9.figshare.30578017.v1
title: Actin depolymerization by Latrunculin B can either suppress or promote root gravitropism, depending on the developmental stages in Arabidopsis

description: Root gravitropism enables plants to optimize water and nutrient uptake, with actin filaments playing a key regulatory role. However, the effects of F-actin depolymerization on gravitropism have been inconsistent. Here, we show that actin depolymerization impacts root gravitropism in a developmentally dependent manner. In newly germinated roots, weak statolith constraint by actin means depolymerization does not significantly enhance statolith sedimentation but inhibits cell elongation on the upper root side, reducing gravitropic bending. In mature roots, stronger statolith constraint allows actin depolymerization to promote statolith sedimentation and inhibit cell elongation on the lower side, thus accelerating root bending. These findings provide new perspectives for a deeper understanding of the mechanisms underlying root gravitropism.
DOI: 10.3535/7vj-b9l-lsq
title: Scopariinae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/fe0-y5d-jn3
title: Sphrageidus similis (Fuessly, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.29459672
title: Cloning and function analysis of <i>ZmICE1a</i>, a contributor to the melioration of maize kernel traits

description: Kernel traits are important factors in determining maize yield. Gene mining and clarification of relevant gene functions associated with kernel traits is beneficial for breeding high-yield maize varieties. In our previous research, a critical quantitative trait locus (QTL), <i>qKWEI3.1</i>, associated with kernel weight was mapped using a maize F<sub>2:3</sub> population derived from the parental lines SCML0849 and ZNC442. In the present study, <i>qKWEI3.1</i> was fine-mapped, the <i>ZmICE1a</i> gene was cloned, and the relevant functions of <i>ZmICE1a</i> were dissected. The results showed that plants overexpressing <i>ZmICE1</i>a exhibited a shorter reproductive period, increased plant height, greater stem diameter, higher photosynthetic efficiency, and meliorated kernel traits. Transcriptome analysis revealed that <i>ZmICE1a</i> overexpression mediated differentially expressed genes (DEGs) such as <i>SNRK2–10</i>, the E3 ubiquitin-protein ligase <i>AIP2</i>, <i>Pho1</i>, and <i>Pho2</i>. Gene ontology and KEGG pathway enrichment analyses revealed that the DEGs were involved in the abscisic acid signaling pathway, starch, and sucrose metabolism. These results suggest that <i>ZmICE1a</i> is a critical, positive regulator promoting plant growth and meliorating kernel traits. The findings of this study have important implications for the improvement of grain yield through the application of genetic engineering in maize breeding.
DOI: 10.3535/qfx-lsv-7r9
title: Scopariinae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.28300169
title: Computational identification and experimental validation of novel <i>Saccharum officinarum</i> microRNAs along with their targets through RT-PCR approach

description: Various metabolic and cell signaling processes impact the functions of sugarcane plant cells. MicroRNAs (miRNAs) play critical regulatory roles in enhancing yield and providing protection against various stressors. This study seeks to identify and partially characterize several novel miRNAs in sugarcane using <i>in silico</i> tools, while also offering a preliminary assessment of their functions. This was accomplished by predicting novel conserved miRNAs in sugarcane plants using a variety of genomics-based techniques like BLASTn, MFOLD, psRNA Target, sequence logo, Weblogo, primer-3, etc. and annotated using miRBase and NCBI. For validation, RT-PCR method was used along with agarose gel. After the preparation of fourteen randomly chosen primers, they were validated by RT-PCR. Accordingly, they contain fifty specific targeted proteins with substantial targets in the structural, transcriptional protein, etc. Furthermore, the sof-miR5025a directs the heat repeat protein while the voltage-dependent anion is governed by sof-miR8005a. Similarly, the sof-miR7768b and sof-miR6249b monitor the pathogenesis-related protein and zinc finger, C<sub>2</sub>H<sub>2</sub> type protein, which assist as transcription factors. Thus, the novel sugarcane miRNAs target a wide range of important genes help regulate the environment for sugarcane to generate a higher-quality crop.
DOI: 10.6084/m9.figshare.28300169.v1
title: Computational identification and experimental validation of novel <i>Saccharum officinarum</i> microRNAs along with their targets through RT-PCR approach

description: Various metabolic and cell signaling processes impact the functions of sugarcane plant cells. MicroRNAs (miRNAs) play critical regulatory roles in enhancing yield and providing protection against various stressors. This study seeks to identify and partially characterize several novel miRNAs in sugarcane using <i>in silico</i> tools, while also offering a preliminary assessment of their functions. This was accomplished by predicting novel conserved miRNAs in sugarcane plants using a variety of genomics-based techniques like BLASTn, MFOLD, psRNA Target, sequence logo, Weblogo, primer-3, etc. and annotated using miRBase and NCBI. For validation, RT-PCR method was used along with agarose gel. After the preparation of fourteen randomly chosen primers, they were validated by RT-PCR. Accordingly, they contain fifty specific targeted proteins with substantial targets in the structural, transcriptional protein, etc. Furthermore, the sof-miR5025a directs the heat repeat protein while the voltage-dependent anion is governed by sof-miR8005a. Similarly, the sof-miR7768b and sof-miR6249b monitor the pathogenesis-related protein and zinc finger, C<sub>2</sub>H<sub>2</sub> type protein, which assist as transcription factors. Thus, the novel sugarcane miRNAs target a wide range of important genes help regulate the environment for sugarcane to generate a higher-quality crop.
DOI: 10.6084/m9.figshare.29459672.v1
title: Cloning and function analysis of <i>ZmICE1a</i>, a contributor to the melioration of maize kernel traits

description: Kernel traits are important factors in determining maize yield. Gene mining and clarification of relevant gene functions associated with kernel traits is beneficial for breeding high-yield maize varieties. In our previous research, a critical quantitative trait locus (QTL), <i>qKWEI3.1</i>, associated with kernel weight was mapped using a maize F<sub>2:3</sub> population derived from the parental lines SCML0849 and ZNC442. In the present study, <i>qKWEI3.1</i> was fine-mapped, the <i>ZmICE1a</i> gene was cloned, and the relevant functions of <i>ZmICE1a</i> were dissected. The results showed that plants overexpressing <i>ZmICE1</i>a exhibited a shorter reproductive period, increased plant height, greater stem diameter, higher photosynthetic efficiency, and meliorated kernel traits. Transcriptome analysis revealed that <i>ZmICE1a</i> overexpression mediated differentially expressed genes (DEGs) such as <i>SNRK2–10</i>, the E3 ubiquitin-protein ligase <i>AIP2</i>, <i>Pho1</i>, and <i>Pho2</i>. Gene ontology and KEGG pathway enrichment analyses revealed that the DEGs were involved in the abscisic acid signaling pathway, starch, and sucrose metabolism. These results suggest that <i>ZmICE1a</i> is a critical, positive regulator promoting plant growth and meliorating kernel traits. The findings of this study have important implications for the improvement of grain yield through the application of genetic engineering in maize breeding.
DOI: 10.3535/cp5-e3a-0jd
title: Calamia tridens Hufnagel, 1766

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wcg-e52-hze
title: Agriphila selasella Hübner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.29122747
title: Within-host dynamics of HTLV-2 and HIV-1 co-infection with delay

description: This paper formulates a mathematical model for the co-infection of HTLV-2 and HIV-1 with latent reservoirs, four types of distributed-time delays and HIV-1-specific B cells. We establish that the solutions remain bounded and nonnegative, identify the system's steady states, and derive sufficient conditions ensuring both their existence and global asymptotic stability. The system's global stability is confirmed using Lyapunov's method. We provide numerical simulations to support the stability results. Sensitivity analysis of basic reproduction numbers of HTLV-2 mono-infection (R1) and HIV-1 mono-infection (R2) is conducted. We examine how time delays influence the interaction between HIV-1 and HTLV-2. Including delay terms in the model reflects the influence of antiviral treatments, which help decrease R1 and R2, thus limiting the spread of infection. This highlights the potential for designing therapies that prolong delay period. Incorporating such delays improves model precision and supports more effective evaluation of treatment strategies.
DOI: 10.3535/kdf-8ww-1n4
title: Eudonia mercurella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.6084/m9.figshare.29122747.v1
title: Within-host dynamics of HTLV-2 and HIV-1 co-infection with delay

description: This paper formulates a mathematical model for the co-infection of HTLV-2 and HIV-1 with latent reservoirs, four types of distributed-time delays and HIV-1-specific B cells. We establish that the solutions remain bounded and nonnegative, identify the system's steady states, and derive sufficient conditions ensuring both their existence and global asymptotic stability. The system's global stability is confirmed using Lyapunov's method. We provide numerical simulations to support the stability results. Sensitivity analysis of basic reproduction numbers of HTLV-2 mono-infection (R1) and HIV-1 mono-infection (R2) is conducted. We examine how time delays influence the interaction between HIV-1 and HTLV-2. Including delay terms in the model reflects the influence of antiviral treatments, which help decrease R1 and R2, thus limiting the spread of infection. This highlights the potential for designing therapies that prolong delay period. Incorporating such delays improves model precision and supports more effective evaluation of treatment strategies.
DOI: 10.3535/3xt-46b-090
title: Exaeretia allisella Stainton, 1849

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/lh5-5g2-xnl
title: Zophodia convolutella Hübner, 1796

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hvc-f30-5mx
title: Hydraecia micacea Esper, 1789

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/k5f-8jm-jxm
title: Agriphila selasella Hübner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rse-gca-e4b
title: Dypterygia scabriuscula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rfw-vhz-943
title: Hydraecia ultima Holst, 1965

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xlz-gjv-yr0
title: Cyaniris semiargus (von Rottemburg, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/2k7-7h7-ynl
title: Protolampra sobrina Duponchel, 1843

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/07f-flx-9ph
title: Xanthia (Cirrhia) Hübner, 1816

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6cy-fad-6ba
title: Oeneis jutta Hübner, 1806

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/dn2-bz7-1w0
title: Agrochola (Anchoscelis) Guenée, 1839

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/p47-c71-hxm
title: Lycaena Fabricius, 1807

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tzg-wh6-6sy
title: Xanthia (Cirrhia) Hübner, 1816

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vfh-kpd-6cb
title: Xestia (Pachnobia) lorezi Staudinger, 1891

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/v6e-r27-xbq
title: Lithophane (Lithophane) consocia Borkhausen, 1792

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/xj9-pbm-hjb
title: Diaphora mendica (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/byk-pd0-ymn
title: Eudonia mercurella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zsn-v88-zwj
title: Apamea (Apamea) crenata (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cmk-9e8-nmh
title: Furcula bifida (Brahm, 1787)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nbq-4jx-2lp
title: Pempelia Hübner, 1825

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/j1k-5h6-zl8
title: Drepana falcataria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/a19-a94-xgg
title: Diaphora mendica (Clerck, 1759)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/eep-jh0-5nw
title: Lycaena phlaeas (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/jqm-mfz-78z
title: Zophodia convolutella Hübner, 1796

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/hzj-e53-skv
title: Eudonia mercurella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/ntq-bg3-z0g
title: Boloria Moore, 1900

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rp1-879-zew
title: Hydraecia micacea Esper, 1789

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/c3z-k1m-a06
title: Diarsia dahlii Hübner, 1813

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/m4g-qke-zep
title: Xestia (Pachnobia) laetabilis Zetterstedt, 1839

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.13130/rd_unimi/6g4l2b/wvpykk
title: Novembre_1904_Pagina_051.jpg

description: Bulletin of 1904/11/13
DOI: 10.3535/2cf-6np-est
title: Platytes alpinella Hübner

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/n6y-62g-l29
title: Lithophane (Lithophane) consocia Borkhausen, 1792

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/nb2-fj7-rkd
title: Mythimna (Mythimna) impura Hübner, 1808

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/84c-lb0-fv1
title: Papilio machaon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/heg-zw6-x4k
title: Plusia putnami Grote, 1873

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bc8-e23-0ty
title: Agriphila tristellus [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/091-2fd-scs
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tbd-685-cat
title: Glaucopsyche alexis (Poda, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/vmt-03z-wgc
title: Diarsia dahlii Hübner, 1813

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/8qj-1vf-r9d
title: Xestia (Pachnobia) laetabilis Zetterstedt, 1839

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/eh5-xwg-5zx
title: Rheumaptera subhastata (Nolcken, 1870)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/em5-anz-lpy
title: Parascotia fuliginaria (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/t5v-gh6-h5y
title: Gonepteryx rhamni (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/g5w-str-1g0
title: Cyaniris semiargus (von Rottemburg, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/5ps-yp4-v11
title: Lycaena phlaeas (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/kby-m4t-wwd
title: Tholera decimalis Poda, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/cbf-8fy-cqt
title: Lycaena Fabricius, 1807

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tz2-da6-30a
title: Fabriciana adippe ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0se-h4b-021
title: Indalia lutarella (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/0xv-mb6-z1p
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/6zm-jbh-nla
title: Zophodia convolutella Hübner, 1796

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/30c-xmp-bwb
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/bl7-0jc-500
title: Diacrisia sannio (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/yk2-xqh-rl2
title: Papilio machaon Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/fhe-6kk-hrp
title: Diacrisia sannio (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/9qa-1jq-4nr
title: Cyaniris semiargus (von Rottemburg, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/mz5-3bd-eyd
title: Scopariinae

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/11z-ad6-249
title: Dypterygia scabriuscula (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/gw2-al0-c4p
title: Dasypolia (Dasypolia) templi Thunberg, 1792

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/mn8-9vn-td7
title: Ipimorpha subtusa ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/257-xaz-ats
title: Glaucopsyche alexis (Poda, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/zpm-r5p-0x7
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/thn-6nz-0hv
title: Glaucopsyche alexis (Poda, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/7e5-tda-nem
title: Cyaniris semiargus (von Rottemburg, 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.