cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3082153
title: Doppelgänger in Tenthredo in East Asia

description: Figures related to: <br><br>A. Taeger, M. Wei, A. Shinohara (2016) <br>Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa.<br>EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br>Note. The original manuscript title "Doppelgänger in Tenthredo..." was changed by the editor of the journal.<br><br>The specimens examined with scanning electron microscopy (SEM) were uncoated. These images were taken with a SEM JSM-6060LV (Jeol) or with a Keyence VHX-D510 Digital SEM/Microscope.<br>Other photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. Micosoft Image Composite Editor (ICE) was used to stitch together images of large specimens.<br><br>Abstract of the paper:<br><br>Three pairs of species of Tenthredo with a probably allopatric distribution in Japan (and Sakhalin) and the Asian Mainland are treated. Tenthredo leleji sp.n., a species similar to Tenthredo eburata Konow, 1900 is described from Japan and Sakhalin. Tenthredo tenuipennis Malaise, 1931, sp.rev. is removed from synonymy with Tenthredo hilaris F. Smith, 1874. The differences between Tenthredo jonoensis Matsumura, 1912 and Tenthredo cockerelli (Rohwer, 1925) are described and illustrated. Lectotypes are designated for Tenthredo eburata Konow, 1900, Tenthredo jonoensis Matsumura, 1912, Tenthredo vitta Enslin, 1920, and Tenthredo tenuipennis Malaise, 1931.<br>
DOI: 10.6084/m9.figshare.3082159.v1
title: Impact neutrality_part 2

description: This Excel file provides information about 568 journals' rejection rates and impact factors percentile. This represents about 5% of the 2014 Journal Citation Reports.The data sources are listed on the right hand side of the last column.Note: This data is not exhaustive nor is it necessarily representative of Open Access as a whole.
DOI: 10.6084/m9.figshare.3082150
title: Example Arabidopsis DNA sequencing data and genome sequence

description: FASTA formatted sequence data for chromosome 1 of Arabidopsis (circa 2009 assembly), and FASTQ formatted sequence read data (25,000 reads).<br><br>Originally downloaded from:<br><br>http://biocluster.ucr.edu/~tbackman/genome.fasta<br>
DOI: 10.6084/m9.figshare.3082156
title: Geochemistry and petrology of the lower Miocene bimodal volcanic units in the Tunçbilek–Domaniç basin, western Anatolia

description: The lower Miocene (~22–19 Ma) volcanic units in the NE–SW-trending Tunçbilek–Domaniç basin, located in the northeastern-most part of the Neogene successions in western Anatolia, are composed of (1) high-K, calc-alkaline dacitic to rhyolitic volcanic rocks of the Oklukdağı volcanics; (2) calc-alkaline low-MgO (evolved) basalts; and (3) high-MgO mildly alkaline basalts of the Karaköy volcanics. Sr isotopic ratios of the volcanic units increase from high-MgO (~0.7055–0.7057) to low-MgO basaltic rocks (~0.7066–0.7072) and then to dacitic-rhyolitic rocks (0.7081–0.7086). Geochemical features of the volcanic rocks reveal that the calc-alkaline evolved basalts were formed by mixing of basic and acidic magmas. Geochemical studies in the last decade show that the Miocene mafic volcanic rocks in western Anatolia are mainly composed of high-MgO shoshonitic-ultrapotassic rocks (SHO-UK), of which mantle sources were variably, but also intensely metasomatized with crustally derived materials during collisional processes in the region. However, geochemical comparison of the high-MgO basalts of the Karaköy volcanics with the SHO-UK rocks in this region reveal that that the former has too low <sup>87</sup>Sr/<sup>86</sup>Sr<sub>(i)</sub> and high <sup>143</sup>Nd/<sup>144</sup>Nd<sub>(i)</sub> ratios, with lower LILE and LREE abundances, which are firstly described here. These features are interpreted to be derived from more slightly enriched lithospheric mantle sources than that of the SHO-UK. Accepting the SHO-UK rocks in the region were derived from mantle sources that had been metasomatized by northward subduction of crustal slices during Alpine collisional processes, it is proposed that the imbrication and direct subduction of crustal slices were not reached to, and were limited in the mantle domains beneath the basin. The dacites of the Oklukdağı volcanics might be formed either by high-degree melting of the same sources with the SHO-UK, or by melting of the lower crustal mafic sources as previously proposed, and then evolved into the rhyolites via fractional crystallization with limited crustal contribution.
DOI: 10.6084/m9.figshare.3082156.v1
title: Geochemistry and petrology of the lower Miocene bimodal volcanic units in the Tunçbilek–Domaniç basin, western Anatolia

description: The lower Miocene (~22–19 Ma) volcanic units in the NE–SW-trending Tunçbilek–Domaniç basin, located in the northeastern-most part of the Neogene successions in western Anatolia, are composed of (1) high-K, calc-alkaline dacitic to rhyolitic volcanic rocks of the Oklukdağı volcanics; (2) calc-alkaline low-MgO (evolved) basalts; and (3) high-MgO mildly alkaline basalts of the Karaköy volcanics. Sr isotopic ratios of the volcanic units increase from high-MgO (~0.7055–0.7057) to low-MgO basaltic rocks (~0.7066–0.7072) and then to dacitic-rhyolitic rocks (0.7081–0.7086). Geochemical features of the volcanic rocks reveal that the calc-alkaline evolved basalts were formed by mixing of basic and acidic magmas. Geochemical studies in the last decade show that the Miocene mafic volcanic rocks in western Anatolia are mainly composed of high-MgO shoshonitic-ultrapotassic rocks (SHO-UK), of which mantle sources were variably, but also intensely metasomatized with crustally derived materials during collisional processes in the region. However, geochemical comparison of the high-MgO basalts of the Karaköy volcanics with the SHO-UK rocks in this region reveal that that the former has too low <sup>87</sup>Sr/<sup>86</sup>Sr<sub>(i)</sub> and high <sup>143</sup>Nd/<sup>144</sup>Nd<sub>(i)</sub> ratios, with lower LILE and LREE abundances, which are firstly described here. These features are interpreted to be derived from more slightly enriched lithospheric mantle sources than that of the SHO-UK. Accepting the SHO-UK rocks in the region were derived from mantle sources that had been metasomatized by northward subduction of crustal slices during Alpine collisional processes, it is proposed that the imbrication and direct subduction of crustal slices were not reached to, and were limited in the mantle domains beneath the basin. The dacites of the Oklukdağı volcanics might be formed either by high-degree melting of the same sources with the SHO-UK, or by melting of the lower crustal mafic sources as previously proposed, and then evolved into the rhyolites via fractional crystallization with limited crustal contribution.
DOI: 10.6084/m9.figshare.3082153.v1
title: Doppelgänger of Tenthredo in East Asia

description: Figures related to: <br><br>A. Taeger, M. Wei, A. Shinohara (2016) <br>Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa.<br>EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br>Note. The original manuscript title "Doppelgänger in Tenthredo..." was changed by the editor of the journal.<br><br>The specimens examined with scanning electron microscopy (SEM) were uncoated. These images were taken with a SEM JSM-6060LV (Jeol) or with a Keyence VHX-D510 Digital SEM/Microscope.<br>Other photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. Micosoft Image Composite Editor (ICE) was used to stitch together images of large specimens.<br><br>Abstract of the paper:<br><br>Three pairs of species of Tenthredo with a probably allopatric distribution in Japan (and Sakhalin) and the Asian Mainland are treated. Tenthredo leleji sp.n., a species similar to T. eburata Konow, 1900 is described from Japan and Sakhalin. Tenthredo tenuipennis Malaise, 1931, sp.rev. is removed from synonymy with T. hilaris F. Smith, 1874. The differences between T. jonoensis Matsumura, 1912 and T. cockerelli (Rohwer, 1925) are described and illustrated. Lectotypes are designated for Tenthredo eburata Konow, 1900, T. jonoensis Matsumura, 1912, T. vitta Enslin, 1920, and T. tenuipennis Malaise, 1931.<br>
DOI: 10.6084/m9.figshare.3082042
title: advogato.tar.bz2

description: This is the trust network of Advogato. Advogato is an online community platform for developers of free software launched in 1999. Nodes are users of Advogato and the directed edges represent trust relationships. A trust link is called a "certification" on Advogato, and three different levels of certifications are possible on Advogato, corresponding to three different edge weights: certifications as apprentice (0.6), journeyer (0.8) and master (1.0). A user without any trust certificate is called an observer. It is possible to trust oneself on Advogato, and therefore the network contains loops. For more information, please visit: http://konect.uni-koblenz.de/networks/advogato.
DOI: 10.6084/m9.figshare.3082153.v3
title: Doppelgänger in Tenthredo in East Asia

description: Figures related to: <br><br>A. Taeger, M. Wei, A. Shinohara (2016) <br>Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa.<br>EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br>Note. The original manuscript title "Doppelgänger in Tenthredo..." was changed by the editor of the journal.<br><br>The specimens examined with scanning electron microscopy (SEM) were uncoated. These images were taken with a SEM JSM-6060LV (Jeol) or with a Keyence VHX-D510 Digital SEM/Microscope.<br>Other photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. Micosoft Image Composite Editor (ICE) was used to stitch together images of large specimens.<br><br>Abstract of the paper:<br><br>Three pairs of species of Tenthredo with a probably allopatric distribution in Japan (and Sakhalin) and the Asian Mainland are treated. Tenthredo leleji sp.n., a species similar to Tenthredo eburata Konow, 1900 is described from Japan and Sakhalin. Tenthredo tenuipennis Malaise, 1931, sp.rev. is removed from synonymy with Tenthredo hilaris F. Smith, 1874. The differences between Tenthredo jonoensis Matsumura, 1912 and Tenthredo cockerelli (Rohwer, 1925) are described and illustrated. Lectotypes are designated for Tenthredo eburata Konow, 1900, Tenthredo jonoensis Matsumura, 1912, Tenthredo vitta Enslin, 1920, and Tenthredo tenuipennis Malaise, 1931.<br>
DOI: 10.6084/m9.figshare.3082033
title: MGMT promoter bisulfite sequencing PCR in fetal rat spinal cords

description: The raw data of bisulfite sequencing PCR(BSP). Methylation status analysis of MGMT promoter in rat E14 and E18 spinal cords by bisulfite PCR, sub-clone and sequencing in both normal and spina bifida groups. N: normal; S/RA: spina bifida. eg. "18N1_11" means the No.11 clone of samlpe 1 in E18 normal group.
DOI: 10.6084/m9.figshare.3082039
title: Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome

description: The sequence of cattle genome provided a valuable opportunity to systematically link genetic and metabolic traits of cattle. The objectives of this study were 1) to reconstruct genome-scale cattle-specific metabolic pathways based on the most recent and updated cattle genome build and 2) to identify duplicated metabolic genes in the cattle genome for better understanding of metabolic adaptations in cattle. A bioinformatic pipeline of an organism for amalgamating genomic annotations from multiple sources was updated. Using this, an amalgamated cattle genome database based on UMD_3.1, was created. The amalgamated cattle genome database is composed of a total of 33,292 genes: 19,123 consensus genes between NCBI and Ensembl databases, 8,410 and 5,493 genes only found in NCBI or Ensembl, respectively, and 266 genes from NCBI scaffolds. A metabolic reconstruction of the cattle genome and cattle pathway genome database (PGDB) was also developed using Pathway Tools, followed by an intensive manual curation. The manual curation filled or revised 68 pathway holes, deleted 36 metabolic pathways, and added 23 metabolic pathways. Consequently, the curated cattle PGDB contains 304 metabolic pathways, 2,460 reactions including 2,371 enzymatic reactions, and 4,012 enzymes. Furthermore, this study identified eight duplicated genes in 12 metabolic pathways in the cattle genome compared to human and mouse. Some of these duplicated genes are related with specific hormone biosynthesis and detoxifications. The updated genome-scale metabolic reconstruction is a useful tool for understanding biology and metabolic characteristics in cattle. There has been significant improvements in the quality of cattle genome annotations and the MetaCyc database. The duplicated metabolic genes in the cattle genome compared to human and mouse implies evolutionary changes in the cattle genome and provides a useful information for further research on understanding metabolic adaptations of cattle. <br>
DOI: 10.6084/m9.figshare.3082153.v2
title: Doppelgänger of Tenthredo in East Asia

description: Figures related to: <br><br>A. Taeger, M. Wei, A. Shinohara (2016) <br>Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa.<br>EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br>Note. The original manuscript title "Doppelgänger in Tenthredo..." was changed by the editor of the journal.<br><br>The specimens examined with scanning electron microscopy (SEM) were uncoated. These images were taken with a SEM JSM-6060LV (Jeol) or with a Keyence VHX-D510 Digital SEM/Microscope.<br>Other photos were taken with a Leica DFC 495 digital camera and a Leica M405 C stereomicroscope. Composite images with an extended depth of field were created from stacks of images using the software CombineZP, and finally arranged and partly enhanced with Ulead PhotoImpact X3. Micosoft Image Composite Editor (ICE) was used to stitch together images of large specimens.<br><br>Abstract of the paper:<br><br>Three pairs of species of Tenthredo with a probably allopatric distribution in Japan (and Sakhalin) and the Asian Mainland are treated. Tenthredo leleji sp.n., a species similar to T. eburata Konow, 1900 is described from Japan and Sakhalin. Tenthredo tenuipennis Malaise, 1931, sp.rev. is removed from synonymy with T. hilaris F. Smith, 1874. The differences between T. jonoensis Matsumura, 1912 and T. cockerelli (Rohwer, 1925) are described and illustrated. Lectotypes are designated for Tenthredo eburata Konow, 1900, T. jonoensis Matsumura, 1912, T. vitta Enslin, 1920, and T. tenuipennis Malaise, 1931.<br>
DOI: 10.6084/m9.figshare.3082027
title: C-Terminome Web App MySQL Database Dump

description: Production MySQL database dump for the Schiller Lab C-Terminome Web Application.Web App Page: http://cterminome.bio-toolkit.com/Project Home Page: http://bio-toolkit.com/C-terminome/project/<br>
DOI: 10.6084/m9.figshare.3082024
title: Laboratory measurements of the spectral albedo of sea ice and salt crusts on the tropical ocean of Snowball Earth: I. Measurements

description: Associated data for "Laboratory measurements of the spectral albedo of sea ice and salt crusts on the tropical ocean of Snowball Earth: I. Measurements"
DOI: 10.6084/m9.figshare.3082033.v1
title: BSP raw data.zip

description: The raw data of bisulfite sequencing PCR(BSP). Methyla-tion status analysis of MGMT promoter in rat E14 and E18 spinal cords by bisulfite PCR, sub-clone and sequencing in both normal and spina bifida groups. N: normal; S/RA: spina bifida. eg. "18N1_11" means the No.11 clone of samlpe 1 in E18 normal group.
DOI: 10.6084/m9.figshare.3082039.v1
title: Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome

description: The sequence of cattle genome provided a valuable opportunity to systematically link genetic and metabolic traits of cattle. The objectives of this study were 1) to reconstruct genome-scale cattle-specific metabolic pathways based on the most recent and updated cattle genome build and 2) to identify duplicated metabolic genes in the cattle genome for better understanding of metabolic adaptations in cattle. A bioinformatic pipeline of an organism for amalgamating genomic annotations from multiple sources was updated. Using this, an amalgamated cattle genome database based on UMD_3.1, was created. The amalgamated cattle genome database is composed of a total of 33,292 genes: 19,123 consensus genes between NCBI and Ensembl databases, 8,410 and 5,493 genes only found in NCBI or Ensembl, respectively, and 266 genes from NCBI scaffolds. A metabolic reconstruction of the cattle genome and cattle pathway genome database (PGDB) was also developed using Pathway Tools, followed by an intensive manual curation. The manual curation filled or revised 68 pathway holes, deleted 36 metabolic pathways, and added 23 metabolic pathways. Consequently, the curated cattle PGDB contains 304 metabolic pathways, 2,460 reactions including 2,371 enzymatic reactions, and 4,012 enzymes. Furthermore, this study identified eight duplicated genes in 12 metabolic pathways in the cattle genome compared to human and mouse. Some of these duplicated genes are related with specific hormone biosynthesis and detoxifications. The updated genome-scale metabolic reconstruction is a useful tool for understanding biology and metabolic characteristics in cattle. There has been significant improvements in the quality of cattle genome annotations and the MetaCyc database. The duplicated metabolic genes in the cattle genome compared to human and mouse implies evolutionary changes in the cattle genome and provides a useful information for further research on understanding metabolic adaptations of cattle. <br>
DOI: 10.6084/m9.figshare.3082000
title: Intranasal volume changes caused by the endoscopic endonasal transsphenoidal approach and their effects on nasal functions.xls

description: Intranasal volume changes caused by the endoscopic endonasal transsphenoidal approach and their effects on nasal functions
DOI: 10.6084/m9.figshare.3082024.v1
title: Laboratory measurements of the spectral albedo of sea ice and salt crusts on the tropical ocean of Snowball Earth: I. Measurements

description: Associated data for "Laboratory measurements of the spectral albedo of sea ice and salt crusts on the tropical ocean of Snowball Earth: I. Measurements"
DOI: 10.6084/m9.figshare.3082033.v3
title: MGMT promoter bisulfite sequencing PCR in fetal rat spinal cords

description: The raw data of bisulfite sequencing PCR(BSP). Methylation status analysis of MGMT promoter in rat E14 and E18 spinal cords by bisulfite PCR, sub-clone and sequencing in both normal and spina bifida groups. N: normal; S/RA: spina bifida. eg. "18N1_11" means the No.11 clone of samlpe 1 in E18 normal group.
DOI: 10.6084/m9.figshare.3082000.v2
title: Intranasal volume changes caused by the endoscopic endonasal transsphenoidal approach and their effects on nasal functions.xls

description: Intranasal volume changes caused by the endoscopic endonasal transsphenoidal approach and their effects on nasal functions
DOI: 10.6084/m9.figshare.3082039.v2
title: Global Metabolic Reconstruction and Metabolic Gene Evolution in the Cattle Genome

description: The sequence of cattle genome provided a valuable opportunity to systematically link genetic and metabolic traits of cattle. The objectives of this study were 1) to reconstruct genome-scale cattle-specific metabolic pathways based on the most recent and updated cattle genome build and 2) to identify duplicated metabolic genes in the cattle genome for better understanding of metabolic adaptations in cattle. A bioinformatic pipeline of an organism for amalgamating genomic annotations from multiple sources was updated. Using this, an amalgamated cattle genome database based on UMD_3.1, was created. The amalgamated cattle genome database is composed of a total of 33,292 genes: 19,123 consensus genes between NCBI and Ensembl databases, 8,410 and 5,493 genes only found in NCBI or Ensembl, respectively, and 266 genes from NCBI scaffolds. A metabolic reconstruction of the cattle genome and cattle pathway genome database (PGDB) was also developed using Pathway Tools, followed by an intensive manual curation. The manual curation filled or revised 68 pathway holes, deleted 36 metabolic pathways, and added 23 metabolic pathways. Consequently, the curated cattle PGDB contains 304 metabolic pathways, 2,460 reactions including 2,371 enzymatic reactions, and 4,012 enzymes. Furthermore, this study identified eight duplicated genes in 12 metabolic pathways in the cattle genome compared to human and mouse. Some of these duplicated genes are related with specific hormone biosynthesis and detoxifications. The updated genome-scale metabolic reconstruction is a useful tool for understanding biology and metabolic characteristics in cattle. There has been significant improvements in the quality of cattle genome annotations and the MetaCyc database. The duplicated metabolic genes in the cattle genome compared to human and mouse implies evolutionary changes in the cattle genome and provides a useful information for further research on understanding metabolic adaptations of cattle. <br>
DOI: 10.6084/m9.figshare.3082000.v1
title: EETSA_3D_public open.xls

description: Intranasal volume changes caused by the endoscopic endonasal transsphenoidal approach and their effects on nasal functions
DOI: 10.6084/m9.figshare.3082033.v2
title: MGMT promoter bisulfite sequencing PCR in fetal rat spinal cords

description: The raw data of bisulfite sequencing PCR(BSP). Methylation status analysis of MGMT promoter in rat E14 and E18 spinal cords by bisulfite PCR, sub-clone and sequencing in both normal and spina bifida groups. N: normal; S/RA: spina bifida. eg. "18N1_11" means the No.11 clone of samlpe 1 in E18 normal group.