cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27938046.v1
title: Data and Results for Biodiversity Conservation Paper

description: Informatics technologies are revolutionizing wildlife conservation by addressing the critical challenges posed by climate change, habitat fragmentation, and biodiversity loss. This bibliometric review examines the global research landscape on leveraging informatics tools—such as machine learning, remote sensing, geographic information systems (GIS), and big data analytics—to support wildlife conservation and biodiversity management. Using Scopus as the primary database, the study analyzed 643 publications from 1993 to 2024, identifying trends, collaborations, and thematic focuses within the field
DOI: 10.6084/m9.figshare.c.3614585_d1.v1
title: Additional file 3: of Investigating the pertussis resurgence in England and Wales, and options for future control

description: Graphical User Interface porgramme to present pertussis simulation model results. (ZIP 8235 kb)
DOI: 10.6084/m9.figshare.c.3614588_d1.v1
title: Additional file 1: of Initial central venous pressure could be a prognostic marker for hemodynamic improvement of polymyxin B direct hemoperfusion: a retrospective cohort study

description: Table S1. Results of univariate regression analysis for the difference in the vasopressor dependency index between before and 24Â h after PMX-DHP. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614573_d7.v1
title: Additional file 3 of Reliable scaling of position weight matrices for binding strength comparisons between transcription factors

description: Table S3. (TXT 0.232KB)
DOI: 10.6084/m9.figshare.c.3614585_d2.v1
title: Additional file 1: of Investigating the pertussis resurgence in England and Wales, and options for future control

description: Pertussis notification data and pertussis vaccination coverage between 1954 and 2013 in England and Wales in an EXCEL file. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614573_d10.v1
title: Additional file 9 of Reliable scaling of position weight matrices for binding strength comparisons between transcription factors

description: Table S2. (TXT 1.015KB)
DOI: 10.6084/m9.figshare.c.3614690_d8.v1
title: Additional file 3: Table S3 of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Significant Gene Ontology (GO) categories among the cultivar-specific genes deregulated by MNSV-Mα5/3’264. Gene Ontology terms (GO terms) that were statistically over or under-represented among the 1618 genes that were specifically deregulated by MNSV-Mα5/3’264 in Planters Jumbo and among the 2925 genes that were specifically deregulated by the same virus in Tendral. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3614690_d9.v1
title: Additional file 6: Table S6. of Transcriptomic profiling of Melon necrotic spot virus-infected melon plants revealed virus strain and plant cultivar-specific alterations

description: Differentially expressed genes in directly inoculated leaves with MNSV and their associated significant GO terms. (XLSX 65 kb)
DOI: 10.17863/cam.25790
title: Data supporting: The Apatite Forming Ability of Micro- and Nanocomposites of α-Tricalcium Phosphate/Poly (D,L-lactide-co-glycolide)

description: Bioresorbable composites consist of micro- and nano-sized α-tricalcium phosphate (α-TCP) particles in a poly(D,L-lactic-co-glycolic acid) (PLGA) matrix were compared for their ability to form bone-like apatite in simulated body fluid (SBF). Due to the uniform distribution of α-TCP nanoparticles over the nanocomposite surface, enhanced apatite formation was observed. Compared with microcomposite with the same α-TCP load, this enhanced apatite formation was achieved through faster and more uniform apatite nucleation. In the first stage of apatite formation, the presence of abundant high energy boundaries between α-TCP nanoparticles and PLGA matrix in nanocomposite provided a large number of suitable sites for calcium phosphate (CaP) nucleation. A homogenous distribution fo CaP nuclei formed after days. The resulting apatite crystals grew to form a flake-like apatite layer. In contrast, CaP nucleation was only observed on the micrometre-size α-TCP particles in the microcomposite over the same period. After 14 days, a dense, flake-like apatite was visible covering the surface of nanocomposite, whilst this suface layer was formed only on α-TCP particles of the microcomposite.
DOI: 10.6084/m9.figshare.c.3614765_d2.v1
title: Additional file 2: Table S2. of Functional development of the adult ovine mammary glandâ  insights from gene expression profiling

description: RNA-seq data for genes more highly expressed during late pregnancy. Table S3: RNA-seq data for genes more highly expressed during lactation. (XLSX 1006 kb)
DOI: 10.6084/m9.figshare.c.3614762_d3.v1
title: Additional file 9: Text S2. of Modeling the integration of bacterial rRNA fragments into the human cancer genome

description: Pseudomonas accessions. A list of GenBank accessions used to calculate the Pseudomonas genome %GC. (TXT 672 bytes)
DOI: 10.17863/cam.69769
title: SPRI Time-and Position-Tagged Radio Echo Profiles for Severnaya Zemlya (SZ), 1997, plus derived Ice Thickness point data and Digital Elevation Models (DEMs)

description: This data set contains radar sounder echo strength profiles from the SPRI 100 MHz ice penetrating radar instrument deployed over Severnaya Zemlya (SZ), Russian Arctic, in 1997 as well as ice thickness and related products generated from these data. The data were collected during survey flights between 9 and 24 April 1997 under funding from: U.K. Natural Environment Research Council (NERC) grants GR3/9958 and GST/02/2195; EU Environment Programme grants ENV4CT97-0490 and 0426; Alfred-Wegener-Institut, Germany; and Russian Fund for Fundamental Studies. Participants from the Scott Polar Research Institute (SPRI)/Bristol Glaciology Centre were J. A. Dowdeswell, M. R. Gorman and R. P. Bassford. The project was a collaboration between UK scientists and those from Russian institutions, principally the Institute of Geography at the Russian Academy of Sciences, Moscow (Drs A.F Glazovsky and Y.Y. Macheret). Dataset prepared for archive by J. A. Dowdeswell, T. J. Benham and F. D. W. Christie of SPRI, 2023. Total file size: 1.60 Gb (zipped); 6.11 Gb (unzipped)
DOI: 10.17863/cam.13239
title: Research data supporting "Charge compensation at the interface between the polar NaCl(111) surface and a NaCl aqueous solution"

description: All input and output files required to reproduce the figures of the publication to which this data belongs
DOI: 10.6084/m9.figshare.c.3614843_d4.v1
title: Additional file 6: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Total genome length estimation for NG50. This spreadsheet file contains the calculation of the average genome lengths for the complete reference sequences available through the NCBI RefSeq database for the most abundant genera in the Crohnâ  s and healthy data sets. The estimated total genome length is also calculated in this file. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3614843_d5.v1
title: Additional file 2: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Proportion of nodes with Shannon’s index scores greater than one for sequence feature functional classes. This spreadsheet file contains the counts for sequence features assigned to various functional classes, including the Seed subsystems, RNA operons, and transposase sequences. This file also contains the proportion of sequence features whose nodes have Shannon’s index scores greater than one. The results of the Wilcoxon Signed-Rank test comparing proportions of nodes with Shannon’s index scores greater than one for the Seed subsystems against the transposase sequence features and RNA operons are also included in this file. (XLSX 74 kb)
DOI: 10.6084/m9.figshare.c.3614846_d4.v1
title: Additional file 4: Table S4. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: GC-rich elements in C. albicans mtDNA. OpenDocument (ISO/IEC 26300) spreadsheet format. Colors denote different hairpin structure types, as in Fig.Â 8a. The second copy of inverted repeat (IRb) is omitted. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3614843_d6.v1
title: Additional file 5: of Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

description: Antibiotics resistance gene hits. This spreadsheet file contains the antibiotics resistance gene hits for each of the transposase clusters. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3614846_d5.v1
title: Additional file 6: Table S6. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: Mitochondrial genome sequences used in the evolutionary comparisons. Genome size, accession numbers, number of introns, and references are provided. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3614867_d1.v1
title: Additional file 1: of Can ventilator settings reduce the negative effects of endotracheal suctioning? Investigations in a mechanical lung model

description: RR (Ventilator frequency), Vti (insp.tidal volume), Vte (exp. tidal volume), MVe (minute ventilaton), Pinsp (= PPEAK ventilator), Pmean (= PMEAN ventilator), Ventilator PEEP (= PEEP ventilator), Distal transducer Pinsp (= PPEAK model airways), Distal transducer PEEP (= PEEP model airways). Data are presented for each of the permutations listed in the methods section; before scope/catheter insertion (30 sec), after insertion (30 sec), during suctioning (30 sec) and after removal of the device (30 sec). Calculations are also listed in separate columns. (XLSX 522 kb)
DOI: 10.6084/m9.figshare.c.3614846_d6.v1
title: Additional file 2: Table S2. of The transcriptome of Candida albicans mitochondria and the evolution of organellar transcription units in yeasts

description: Promoters and promoter-like sequences in C. albicans mtDNA. Promoters of the primary transcription units are highlighted. In the “support” column “none” means that a consensus nonanucleotide is present, but no transcriptional activity can be reliably attributed to the promoter, “reads” means that there is an increased number of reads mapping downstream of the promoter, “reads and 5’-RACE” means promoters confirmed independently (Fig. 4). The second copy of inverted repeat (IRb) is omitted, as in Fig. 2b. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3614885_d1.v1
title: MOESM1 of Assessing methanotrophy and carbon fixation
            for biofuel production by Methanosarcina acetivorans

description: Additional file 1. iMAC868 metabolic reconstruction.
DOI: 10.5281/zenodo.14509456
title: МЕТОДЫ ЭКОЛОГИЧЕСКОГО РАЙОНИРОВАНИЯ ТЕРРИТОРИИ
DOI: 10.5281/zenodo.14509457
title: МЕТОДЫ ЭКОЛОГИЧЕСКОГО РАЙОНИРОВАНИЯ ТЕРРИТОРИИ
DOI: 10.6084/m9.figshare.c.3614978_d5.v1
title: Additional file 6: of Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish

description: Amplicon screening data used for Fig.Â 5. (TXT 3213Â kb)
DOI: 10.6084/m9.figshare.c.3614978_d6.v1
title: Additional file 8: of Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish

description: Sample accession numbers. (TSV 80Â kb)
DOI: 10.6084/m9.figshare.c.3615005_d1.v1
title: Additional file 4: of Pinpointing genes underlying annual/perennial transitions with comparative genomics

description: A Newick text file containing the phylogenetic tree in Figure 1. (TXT 283 bytes)
DOI: 10.6084/m9.figshare.c.3614978_d7.v1
title: Additional file 1: of Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish

description: Table of CRISPR target sequences. (TXT 7Â kb)
DOI: 10.17863/cam.18116
title: Research data supporting "Droplet microfluidics for the highly controlled synthesis of branched gold nanoparticles"

description: Research data supporting "Droplet microfluidics for the highly controlled synthesis of branched gold nanoparticles". The article was accepted for publication in January 2018 in the journal "Scientific Reports". Electronic supporting Information is available from the publisher (Nature Publishing Group - NPG). The data is provided with a description in pdf and a structured set of two folders compressed in zip, each correlating to a specific data type presented in the published article. Folder 1: Images - containing images as acquired before any software treatments such as cropping or light/contrast adjusting. Folder 2: Data sheet for histograms – containing csv files with measurements of droplet size for creating histograms shown in Supplementary Information included in the published manuscript.
DOI: 10.6084/m9.figshare.c.3614978_d8.v1
title: Additional file 5: of Efficient identification of CRISPR/Cas9-induced insertions/deletions by direct germline screening in zebrafish

description: Results from KASP genotyping used for Fig.Â 4d. (TXT 910 bytes)
DOI: 10.6084/m9.figshare.c.3615005_d2.v1
title: Additional file 3: Table S3. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

description: Provides Genbank accession numbers for A. alpina genes and Phytozome V9 identifiers for A. lyrata genes in the five final families that contain no genes from annuals. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3615005_d3.v1
title: Additional file 2: Table S2. of Pinpointing genes underlying annual/perennial transitions with comparative genomics

description: Provides Genbank accession numbers for the genes used in the phylogenetic tree. (XLS 20 kb)
DOI: 10.15468/dl.jv822a
title: Occurrence Download

description: A dataset containing 89100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oreochromis niloticus (Linnaeus, 1758)"
 ]
}

 The dataset includes 89100 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037802-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.106527
title: I-CeM Lookup Table -- Hollerith Birthplace codes: England and Wales 1911; Scotland 1921

description: This spreadsheet is designed to be used in conjunction with the Integrated Census Microdata (I-CeM) collection of historic census data covering the period 1851 to 1921. For further details of the I-CeM data collection, please visit the comprehensive project website at: https://www.campop.geog.cam.ac.uk/research/projects/icem/ Outline information on the I-CeM project are also provided on the README page of this spreadsheet. This file is specifically related to the I-CeM data collection variable HOLLERBP
DOI: 10.6084/m9.figshare.c.3615017_d1.v1
title: Additional file 1: Table S1. of A metagenomic approach from aphid’s hemolymph sheds light on the potential roles of co-existing endosymbionts

description: List of primers used in this study. B: primers targeting Buchnera genus; W: primers targeting Wolbachia genus; wPn: specific primers for wPn. (XLSX 13 kb)
DOI: 10.17863/cam.53088
title: Data supporting 'The viscous Holmboe instability for smooth shear and density profiles'

description: MATLAB files for the results of linear stability analyses within the paper, which were generated using code from Smyth & Carpenter 2019. Each file contains a variable "sigma", the complex growth rate corresponding to the parameters given by the other variables. The naming convention for the files is R-Re-Pr-L_z. Certain calculations have been repeated at a smaller range and higher resolution of J-k space; the filenames of these have the suffix "-zoom".
DOI: 10.6084/m9.figshare.c.3615080_d7.v1
title: Additional file 9: of Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

description: Amino acid alignment for helvolic acid supermatrix. (FASTA 40 kb)
DOI: 10.6084/m9.figshare.c.3615080_d12.v1
title: Additional file 4: of Secondary metabolite gene clusters in the entomopathogen fungus Metarhizium anisopliae: genome identification and patterns of expression in a cuticle infection model

description: Amino acid alignment for the pseurotin-related backbone gene and related orthologs. (FASTA 67 kb)
DOI: 10.17863/cam.37306
title: Research data supporting 'Microscopic analysis of thermo-orientation in systems of off-centre Lennard-Jones particles'

description: lammps-11Aug17_mod.tbz2: A modified version of LAMMPS used to run simulations presented in the manuscript. simulations-and-analysis.tar.bz2: Input files that can be used to generate the data in the manuscript, averaged outputs, an analysis script and analysed data shown in the manuscript figures. See the associated Readme file for further information regarding this dataset and its usage.
DOI: 10.17863/cam.53696
title: Underlying data supporting: Misjudging Early Embryo Mortality in Natural Human Reproduction

description: This file consists of transcripts of scientific witness statements submitted as evidence in R (on the application of Smeaton) v Secretary of State for Health [2002] EWHC 610 (admin) (18 April 2002) (Case No: CO/928/01). They are included to enable readers to evaluate claims made in the main article and to see the full extent of the evidence presented to The Honourable Mr Justice Munby. Where no explicit consent to publish the statements has been obtained from a witness, the content has been redacted, except where that content has been quoted by Munby J. in his judgment or directly referenced by me in the main article. The transcripts were made personally by the author of the main article from photocopies of documents in the archives of the Claimant. Every attempt has been made to ensure that the transcripts are faithful reproductions of these photocopies. This means that typographical or other errors in the original documents have been retained and transcribed. Copies of the unredacted transcript and original documents will be made available on request. Any errors of transcription are the responsibility of the author and will be corrected on notification. Personal addresses will remain redacted where indicated. Copyright (“all rights reserved”) for the contents of the individual witness statements remains with the respective authors.
DOI: 10.25420/britishmuseum.28008731
title: Transcription and translation of interviews

description: Transcription and translation of interviews
DOI: 10.25420/britishmuseum.28008731.v1
title: Transcription and translation of interviews

description: Transcription and translation of interviews
DOI: 10.6084/m9.figshare.c.3615221_d4.v1
title: Additional file 3: Dataset S1. of Genetic differentiation over a small spatial scale of the sand fly Lutzomyia vexator (Diptera: Psychodidae)

description: FASTA files for sequences recovered during search for microsatellite markers in the genome of Lutzomyia vexator. Contig number, the number of times the Contig was recovered, the length of the Contig and sequence are given. (TXT 44429Â kb)
DOI: 10.6084/m9.figshare.c.3615254_d1.v1
title: Additional file 1: of Community-based mental health treatments for survivors of torture and militant attacks in Southern Iraq: a randomized control trial

description: Figure S1. Baseline and follow up trauma scores for intervention and control clients by CMHW. The plot on the left shows the baseline and final trauma symptom scores of controls and the plot on the right shows the symptom scores of clients who received CETA. Baseline scores are highlighted with blue symbols; follow up scores have black symbols. Grey lines connect the baseline with the follow up score and the length reflects the amount of change. Red text indicates the CMHW who enrolled the control clients and who provided therapy to the CETA clients. The distribution of scores does not suggest any systematic manipulation of scores in a way to create the large effect size found in this trial. Baseline symptom scores vary across clients, and vary within the clients of the CMHWs. Follow up scores also vary across and within the clients of CMHWs, with a few exceptions. Where a particular CMHW has a group of intervention clients with similar follow up scores (e.g., 202, 211), the controls have similar follow up scores to that CMHWâ  s intervention clients. If there was an effort by these two CMHWs to artificially create a large effect size, we would expect the opposite pattern: intervention clients would have very different and lower follow up scores than controls. Figure S2. Baseline and follow up trauma scores for intervention and control clients by follow up interviewer. The plot on the left shows the baseline and final trauma symptom scores of controls and the plot on the right shows the scores of clients who received CETA. Baseline symptom scores are highlighted with blue symbols; follow up scores have black symbols. Grey lines connect the baseline with the follow up score and show the amount of change between the two time points. Green text indicates the interviewer who conducted the follow up interview for a particular client. As in Figure S1, the distribution of scores does not suggest any systematic manipulation of scores in a way to create the large effect size found in this trial. Follow up scores vary across clients. Follow up scores vary within the clients who met with a particular follow up interviewer, with a few exceptions. Where a particular interviewer has a group of intervention clients with similar follow up scores (e.g., 202, 211), the controls also have similar follow up scores to the intervention clients. If there was an effort by these two interviewers (who interviewed each otherâ  s clients) to artificially create a large effect size, we would expect intervention clients to have much lower follow up scores than controls. (ZIP 296 kb)
DOI: 10.6084/m9.figshare.c.3615257_d1.v1
title: Additional file 1 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: R code for the main function and auxiliary functions for the described method. (TXT 43 kb)
DOI: 10.6084/m9.figshare.c.3615257_d2.v1
title: Additional file 3 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: First example data set in txt format. (TXT 1 kb)
DOI: 10.6084/m9.figshare.c.3615263_d1.v1
title: Additional file 7: of Enrichment of extracellular vesicles from tissues of the central nervous system by PROSPR

description: Dataset 6. List of proteins identified in PROSPR-CNS-EVs that were not previously reported in EV databases. (XLS 146Â kb)
DOI: 10.6084/m9.figshare.c.3615266_d1.v1
title: Additional file 1: Table S1. of Genome-wide association study to identify potential genetic modifiers in a canine model for Duchenne muscular dystrophy

description: Primer and assay information for qPCR experiments. The Gene IDs and associated Gene Names are found on the left, followed by their CFA chromosomal locations (chromosome number), and start and end positions (in bp) based on CanFam3.2. The TaqMan assays or SybrGreen primer sequences used for qPCR are presented next, along with the associated UniGene ID (where available). The remaining columns indicate which mRNA and protein sequences are associated with the investigated genes, along with the locations of the qPCR assays themselves and size of the expected amplicon. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3615257_d3.v1
title: Additional file 2 of Modelling multiple thresholds in meta-analysis of diagnostic test accuracy studies

description: R code for application of the method to the example data. (TXT 3 kb)