cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zef429
title: Occurrence Download

description: A dataset containing 829 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudois nayaur (Hodgson, 1833)"
 ]
}

 The dataset includes 829 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031551-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zycxj
title: Occurrence Download

description: A dataset containing 8897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chlorocebus pygerythrus (F.Cuvier, 1821)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8897 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031552-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zks67u
title: Occurrence Download

description: A dataset containing 242 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acrocomia totai Mart."
 ]
}

 The dataset includes 242 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031554-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gfaxdp
title: Occurrence Download

description: A dataset containing 3360721 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae, Undaria pinnatifida (Harv.) Suringar)",
 "Country is New Zealand",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 0",
 "DecimalLongitude is greater than or equal to -180",
 "DecimalLatitude is greater than or equal to -90",
 {
 "not" : {
 "or" : [
 "Issue is Zero coordinate",
 "Issue is Coordinate out of range",
 "Issue is Country coordinate mismatch"
 ]
 }
 }
 ]
}

 The dataset includes 3360721 records from 282 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031534-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3b2pg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps carruthersi Du Preez, Netherlands & Minter, 2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031553-250525065834625/datasets/export for details.
DOI: 10.15468/dl.3dug2s
title: Occurrence Download

description: A dataset containing 2230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colobus guereza Rüppell, 1835",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2230 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031555-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15626931
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250609u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250609u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15626932
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250609u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250609u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.uqera2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps carruthersi Du Preez, Netherlands & Minter, 2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031556-250525065834625/datasets/export for details.
DOI: 10.6073/pasta/a3a561984ac9c3f7ab8247c0ebd664cb
title: Merged discrete water-column data from PAL LTER research cruises along the Western Antarctic Peninsula, from 1991 to 2024.

description: Water samples are collected throughout the water column along the Western Antarctic Peninsula at regular LTER grid stations where CTD casts are preformed and in surface waters at underway stations, where CTD casts are not done, using the ship's flow-through seawater system. This dataset is the compilation of water samples collected at these stations, merged from other PAL-LTER datasets. Data includes water column Chlorophyll and Phaeopigment concentrations; phytoplankton accessory pigments -including other chlorophyll's (e.g. chlorophyll b), xanthophylls, and carotenes; primary production rates; bacterial production; dissolved organic carbon; particulate organic carbon and nitrogen; dissolved inorganic nutrients; dissolved oxygen, and dissolved inorganic carbon and alkalinity. Measurements of phytoplankton Fv/Fm measured using a FIRe (Fluorescence Induction and Relaxation) fluorometer are also included, though caution is urged as FIRe data has not been corrected nor QCed. Conductivity, temperature, depth, and associated data from instruments on the sampling rosette (e.g. PAR, beam transmission) for each sampling depth are also included.
 Phytoplankton accessory pigment data is unavailable for the LMG10-01 cruise due to instrumentation problems and for the LMG12-01 cruise due to a freezer failure which resulted in the loss of samples. Dissolved oxygen measurements were discontinues after 2012, and thus no data is available from 2013 onwards. Dissolved Organic Carbon data is unavailable after 2012 due to instrumentation problems. There is no Particulate Organic Carbon data for cruise PD94-01. Dissolved Inorganic Nutrient samples after 2019 have not been analyzed yet.
DOI: 10.25934/pr00007927
title: SIDERO-WT

description: Annual evaluation of cefiderocol activities against US/EU Gram-negative isolates. To evaluate the antibacterial activity of cefiderocol and comparators against a wide variety of Gram-negative bacteria including carbapenem-resistant isolates.
description: SIDERO-WT, antibiotic susceptibility surveillance data for each isolate from North America and Europe in 2014 to 2019. In five consecutive annual SIDERO-WT surveillance studies (2014 to 2019), the susceptibility of cefiderocol and comparators against Gram-negative clinical isolates from North America and Europe was evaluated by broth microdilution. MICs of cefiderocol have been determined by broth microdilution assay using iron-depleted cation-adjusted Mueller-Hinton broth, which has been approved by CLSI and EUCAST. MICs of other comparators have been determined by broth microdilution assay using cation-adjusted Mueller-Hinton broth, which has been approved by CLSI and EUCAST. The breakpoints of comparators were based on published information by CLSI and EUCAST.
47615 isolates (including 31,896 isolates of Enterobacterales, 7,700 isolates of Pseudomonas aeruginosa, 5,225 isolates of Acinetobacter baumannii complex, 2,030 isolates of Stenotrophomonas maltophilia, and 425 isolates of Burkholderia cepacia complex).
DOI: 10.25934/pr00007928
title: Global Surveillance 2018-2020

description: To determine AMR rates in key gram-negative pathogens from global sites
description: Study organisms were clinical isolates previously collected and frozen at -70�C. Isolates were from documented infections (clinically relevant causative agent), with only one isolate per species per patient allowed. Isolates were from community- and hospital-associated infection sources, distributed globally (>250 sites; >50 countries) with a focus on the United States (for 2018-2020: 22.4% of total) and Europe (for 2018-2020: 42.1% of total). Patient locations included: General Medicine; Medical ICU; Surgery General; Surgery ICU; Emergency Room; Pediatric ICU; General ICU; and Pediatric General. Isolates were sourced from: respiratory tract infections, urinary tract infections, bloodstream infections, intraabdominal infections, and skin/soft tissue infections. Organisms included Enterobacterales (for 2018-2020: n=13,731), Pseudomonas aeruginosa (for 2018-2020: n=4,619), Stenotrophomonas maltophilia (for 2018-2020: n=298) and methicillin-susceptible Staphylococcus aureus (for 2018-2020: MSSA; n=140). The identities of all isolates were confirmed using MALDI-TOF mass spectrometry. Broth microdilution MICs were determined using the ISO 20776-1:2019/CLSI M07 11th Ed. reference method. Quality control (QC) testing was performed each day of testing (CLSI M100).

Inclusions: human infection (clinically relevant causative agent), one isolate per infection episode; Exclusions: screening/carriage isolates, multiple isolates per infection episode.
DOI: 10.25934/pr00007929
title: ATLAS_Antifungals

description: Primary Objective The ATLAS programme monitors changes in antibiotic susceptibility, bacterial resistance trends and emergence of new resistance mechanism for both marketed and in development antibiotics.  In addition, provides genotypic information when tested.  The SENTRY platform data allow for monitoring of antifungal susceptibility and resistance trending of key antifungals.
description: The ATLAS program is one overall study (formerly TEST, INFORM and AWARE (in the dataset the AWARE program is labelled as Atlas) fulfilling regulatory requirements and supporting appropriate use measures for both marketed antibiotics (Tygacil, Zyvox, Zosyn/Tazocin, Zavicefta, Zinforo, Merrem and others) by monitoring changes in antibiotic susceptibility, bacterial resistance trends and emergence of new resistance mechanisms. 
The dataset also includes isolates from the SPIDAAR program. SPIDAAR is a study that is associated with ATLAS, and is being run concurrently, but focuses on 8 sites in Africa that are not covered by ATLAS. 
CLSI breakpoints are utilized but the option exists to analyse the data by using EUCAST breakpoints. All bacterial isolate identifications and susceptibility profiles are performed by standardized broth microdilution methods by a central lab. 
The antifungal data from the SENTRY platform are generated by standardized antifungal susceptibility methods performed at a central laboratory.
DOI: 10.25934/pr00007931
title: Bedaquiline Drug Resistance Assessment in MDR-TB (DREAM)

description: To determine the level of susceptibility of MDR-TB isolates to BDQ by the minimal inhibitory concentration (MIC) drug susceptibility testing (DST) methods.
description: DREAM program to determine the level of susceptibility of multidrug-resistant tuberculosis isolates to bedaquiline. Preliminary identification and rapid DST are performed at the local labs. Pure cultures are sent to the NTRL for additional phenotypic DST. Isolates must be or must have been collected from MDR-TB patients. In some cases, resistance to rifampicin is sufficient. Non-mycobacteria, non-tuberculosis mycobacteria and rifampicin susceptible MTB are excluded.
Currently there are no FDA/CLSI breakpoints for BDQ. EUCAST had established a provisional susceptible breakpoint of =<0.25 mg/L irrespective of the test medium. Given that the EUCAST breakpoint was based on limited data available at the time, we are defining new interpretive criteria based on ECV/ECOFF from the data generated. These in turn are used to interpret the surveillance results.
DOI: 10.25934/pr00007936
title: SOAR 201818

description: Data generation for antibiotic resistance of the main community-acquired respiratory tract infection pathogens such as Streptococcus pneumoniae and Haemophilus influenzae.
description: Results from the Survey of Antibiotic Resistance (SOAR) 2014-2016 in Bulgaria, Romania, Serbia, Croatia, Russia, Czech Republic, Ukraine, the Slovak Republic and Greece
DOI: 10.25934/pr00010481
title: PLEA (Study I)

description: To examine the antimicrobial susceptibility profiles and resistance mechanisms of clinical isolates gathered from various periods and locations across India. This study focused on key gram-negative pathogens and their resistance patterns to inform and guide treatment strategies.
description: The PLEA Surveillance Study I conducted from 2011 to 2016 collected 3,150 non-duplicate bacterial isolates from 22 medical centers across India. The study focused on four key gram-negative pathogens: Escherichia coli (716 isolates), Klebsiella pneumoniae (435 isolates), Pseudomonas aeruginosa (924 isolates), and Acinetobacter baumannii (1,075 isolates). To assess antimicrobial resistance, the study utilized CLSI-defined phenotypic methods for detecting ESBLs and MBLs. Genotypic characterization involved single PCR with a panel of primers to identify various beta-lactamase enzymes, including ESBLs (blaTEM, blaSHV, blaCTX-M), MBLs (blaVIM, blaNDM, blaIMP), carbapenemases (blaOXA, blaKPC), and Class C cephalosporinases (blaAmpC). MICs for multiple antibiotics, such as Meropenem, Imipenem-Cilastatin, and Colistin, was determined using the CLSI broth dilution method.
DOI: 10.25934/pr00010482
title: PLEA (Study II)

description: To examine the antimicrobial susceptibility profiles and resistance mechanisms of clinical isolates gathered from various periods and locations across India. This study focused on key gram-negative pathogens and their resistance patterns to inform and guide treatment strategies.
description: Preserving Life of Existing Antibiotics (PLEA) Study - II (2018 to 2020). The PLEA Surveillance Study II (2018-2020) involved the collection of 232 non-duplicate gram-negative clinical isolates from 15 medical centers in India between 2018 and 2020. The study focused on E. coli, Klebsiella spp., Acinetobacter spp., and Pseudomonas spp. MBL detection was performed using CLSI-defined phenotypic methods, while susceptibility testing was conducted via the broth micro-dilution method following ISO 20776-1 standards. MICs was determined using the CLSI broth dilution method for polymyxin B.
DOI: 10.25934/pr00010483
title: GASAR (Study III)

description: To examine the antimicrobial susceptibility profiles and resistance mechanisms of clinical isolates gathered from India. This study focused on key gram-negative pathogens and their resistance patterns to inform and guide treatment strategies.
description: Genetic Assessment and Surveillance of Antibiotic Resistance (GASAR) Study (2022 - ongoing). The GASAR Study (2022-ongoing) collected 494 non-duplicate bacterial isolates (first reporting period) from a tertiary-care hospital in India. The isolates included Escherichia coli (283), Klebsiella pneumoniae (144), Pseudomonas aeruginosa (39), and Acinetobacter baumannii (28). The study involved phenotypic characterization to identify ESBLs, MBLs, carbapenemases, and cephalosporinases, and used PCR for genotypic analysis of specific resistance genes (blaTEM, blaSHV, blaCTX-M, blaVIM, blaNDM, blaIMP, blaOXA, blaKPC, blaAmpC). Susceptibility was assessed using the broth microdilution method according to CLSI guidelines, and MIC determination was performed with the CLSI broth dilution method for polymyxin B.
DOI: 10.25934/pr00011455
title: "Empowering LMICs with AMR Intelligence: Open-Source data science training kit for scalable implementation_Data challenge"

description: Antimicrobial resistance (AMR) is a growing global health crisis, complicating treatment and increasing healthcare burdens, with the implementation gap between data and action remaining a challenge. In our data challenge project, we propose building an AMR Intelligence through an Open-Source Data Science training kit strategy that will leverage on pathogen and region-specific datasets (e.g., SOAR, SIDERO-WT, ATLAS) available in the Vivli and Wellcome Trust databases to:
Develop hands-on R/Python tutorials, Data storytelling modules, and Interactive dashboards. These will guide users through identifying AMR trends, quantifying resistance rates, visualizing burden by region and pathogen, and simulating stewardship impact. Each module will be localized for example, “Ten-Year AMR Trends in East Africa” to make analysis relevant and actionable for LMIC health systems.
We will propose embedding the modules in the facility-wide electronic medical record (EMR) systems to prompt healthcare workers towards strengthening the judicious use of antimicrobials.
Design a community-driven platform enabling regional customization, where contributors can adapt modules to local contexts, languages, or use cases (e.g., hospital audit, national action plan support). 
Strengthening implementation pathways by applying frameworks such as RE-AIM (Reach, Effectiveness, Adoption, Implementation and Maintenance) to ensure adoption, effectiveness, and long-term sustainability.
The project aligns with Vivli’s open science goals by maximizing reach, enhancing data discoverability, and promoting real-world application and by embedding AMR data literacy and stewardship intelligence into existing health education ecosystems. Our initiative will equip Low and middle-income countries (LMIC) stakeholders with open-source tools for actionable intelligence and evidence-based interventions to better understand, predict, and respond to antimicrobial resistance. Ultimately, this project bridges a critical implementation gap turning open data into open knowledge, and open knowledge into action which is scalable.
DOI: 10.15468/dl.ktgfs5
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colobus polykomos (Zimmermann, 1780)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 219 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031557-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7r5rh
title: Occurrence Download

description: A dataset containing 60621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "Geometry POLYGON((-99.72732 16.68021,-99.04184 15.97427,-93.29197 15.73895,-92.73949 16.95645,-93.02596 17.40662,-94.31508 18.12279,-94.78571 18.79805,-95.78835 19.55514,-96.70915 19.41191,-99.72732 16.68021))",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 60621 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031548-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xwhb3b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps carruthersi Du Preez, Netherlands & Minter, 2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031559-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ehjwse
title: Occurrence Download

description: A dataset containing 2681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Erythrocebus patas (Schreber, 1774)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2681 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031560-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bb7gu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps carruthersi Du Preez, Netherlands & Minter, 2017",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031561-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15626942
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250609u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250609u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15626943
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250609u Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250609u Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.ut522d
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassostrea corteziensis (Hertlein, 1951)"
 ]
}

 The dataset includes 76 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031563-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.