cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14519128
title: Structure and composition of the insect community associated with flower buds and inflorescences of <i>Byrsonima verbascifolia</i> (Malpighiaceae)

description: The threat addressed to tropical biomes such as the Brazilian Cerrado leads to an urgent need for understanding the natural history of plant-insect interactions within ecosystems. <i>Byrsonima verbascifolia</i> is an evident Cerrado plant found to be economically and culturally important. This plant species is commonly found in that biome, showing a close association with insects since their flower buds and inflorescences contain attractive oil glands for a wide variety of them. In this study, we investigated whether communities of flower-visiting insects and ants associated with <i>B. verbascifolia</i> in the flower bud phase differ from those in the flowering phase. The abundance, richness and diversity of insect visitors to flower buds were similar in relation to inflorescences. However, low similarity of the composition of bud/inflorescence-visiting insects was observed. On the other hand, ants associated with plants in the anthesis phase showed a significantly higher abundance in relation to plants with flower buds, although the diversity was similar in both phases. Ant richness was higher in plants containing greater proportions of open inflorescences than buds, although this difference was only marginally significant. The ant community similarity in plants with buds and inflorescences was higher. Results suggest that different available resources (oil, pollen and petals) in buds and inflorescences of <i>B. verbascifolia</i> recruit a community of insect visitors with distinct composition, which was less affected in relation to the ant community. These findings show that visitors and ants do not use the same flower resource, once there are differences in terms of resources available in both flower buds and inflorescence stages.
DOI: 10.6084/m9.figshare.14519128.v1
title: Structure and composition of the insect community associated with flower buds and inflorescences of <i>Byrsonima verbascifolia</i> (Malpighiaceae)

description: The threat addressed to tropical biomes such as the Brazilian Cerrado leads to an urgent need for understanding the natural history of plant-insect interactions within ecosystems. <i>Byrsonima verbascifolia</i> is an evident Cerrado plant found to be economically and culturally important. This plant species is commonly found in that biome, showing a close association with insects since their flower buds and inflorescences contain attractive oil glands for a wide variety of them. In this study, we investigated whether communities of flower-visiting insects and ants associated with <i>B. verbascifolia</i> in the flower bud phase differ from those in the flowering phase. The abundance, richness and diversity of insect visitors to flower buds were similar in relation to inflorescences. However, low similarity of the composition of bud/inflorescence-visiting insects was observed. On the other hand, ants associated with plants in the anthesis phase showed a significantly higher abundance in relation to plants with flower buds, although the diversity was similar in both phases. Ant richness was higher in plants containing greater proportions of open inflorescences than buds, although this difference was only marginally significant. The ant community similarity in plants with buds and inflorescences was higher. Results suggest that different available resources (oil, pollen and petals) in buds and inflorescences of <i>B. verbascifolia</i> recruit a community of insect visitors with distinct composition, which was less affected in relation to the ant community. These findings show that visitors and ants do not use the same flower resource, once there are differences in terms of resources available in both flower buds and inflorescence stages.
DOI: 10.6084/m9.figshare.14519524.v1
title: Differences in the bird community between a regenerating area and a native forest in Southeastern Brazil

description: Restoration of degraded areas might be assessed via faunal communities of a particular region, and birds are one of the taxa most suitable in such assessments. This study evaluated the dynamics of a bird community in an area of Cerrado under natural regeneration, comparing it with one in the forest remnants. Birds were censused by a total of 24 point counts in both areas comprising 96 h of total sampling. Richness, abundance and diversity were greater at the regeneration area, possibly due to the heterogeneity of habitats, the consequent niche diversity, and the connectivity between patches of vegetation. Functional groups were also distinct between both sites, including species composition, feeding guilds and foraging strata. The regeneration site presented a higher abundance of omnivorous, granivorous and nectarivorous species, which might be related to the presence of sparser canopy, multiple opportunities for the development of grasses and forest-edge plants blooms in open areas. In contrast, higher abundance of invertebrate predators and frugivorous was found in the forested area, further confirming the relationship between those guilds and dense vegetation cover with closed canopies.
DOI: 10.6084/m9.figshare.14519524
title: Differences in the bird community between a regenerating area and a native forest in Southeastern Brazil

description: Restoration of degraded areas might be assessed via faunal communities of a particular region, and birds are one of the taxa most suitable in such assessments. This study evaluated the dynamics of a bird community in an area of Cerrado under natural regeneration, comparing it with one in the forest remnants. Birds were censused by a total of 24 point counts in both areas comprising 96 h of total sampling. Richness, abundance and diversity were greater at the regeneration area, possibly due to the heterogeneity of habitats, the consequent niche diversity, and the connectivity between patches of vegetation. Functional groups were also distinct between both sites, including species composition, feeding guilds and foraging strata. The regeneration site presented a higher abundance of omnivorous, granivorous and nectarivorous species, which might be related to the presence of sparser canopy, multiple opportunities for the development of grasses and forest-edge plants blooms in open areas. In contrast, higher abundance of invertebrate predators and frugivorous was found in the forested area, further confirming the relationship between those guilds and dense vegetation cover with closed canopies.
DOI: 10.6084/m9.figshare.14662768.v1
title: Advertisement call, tadpole morphology, and other natural history aspects of the threatened poison frog <i>Andinobates daleswansoni</i> (Dendrobatidae)

description: Describing natural history of species is important because it would allow us to corroborate hypotheses about evolutionary biology and improve conservations plans. We describe the advertisement call, tadpole morphology, and other natural history aspects of the poison frog <i>Andinobates daleswansoni</i>, an endemic threatened species of the Colombian Andes. The advertisement call consists of multiple pulsed notes, with an average dominant frequency of 4052.81 ± 154.93 Hz. This call sounds similar to the call of other <i>Andinobates</i> frogs, but there are clear differences in spectral and temporal features. Tadpoles have a depressed body, low compressed dorsal and ventral tail fins with a rounded tip. The oral disc has a labial tooth row formula of 2(2)/3(1), and a gap in the marginal papillae of the lower lip, whose status as a synapomorphy for the group <i>A. bombetes</i> is discussed. Like other poison frogs, the diet of <i>A. daleswansoni</i> consists of small arthropods (Acari, Hymenoptera, Coleoptera) that individuals capture in leaflitter. We recorded tadpole transport by males to phytotelmata in the Elephant Ear plant (<i>Xanthosoma robustum</i>) which demonstrate that <i>A. daleswansoni</i> has a greater niche breadth for tadpole development than previously recorded. Acoustic interactions and physical fights observed during an agonistic behaviour on the part of two males of <i>A. daleswansoni</i> is similar to those recorded in other poison frogs and possible associated to the occupation of resources such as availability of prey items and places for breeding.
DOI: 10.6084/m9.figshare.14662768
title: Advertisement call, tadpole morphology, and other natural history aspects of the threatened poison frog <i>Andinobates daleswansoni</i> (Dendrobatidae)

description: Describing natural history of species is important because it would allow us to corroborate hypotheses about evolutionary biology and improve conservations plans. We describe the advertisement call, tadpole morphology, and other natural history aspects of the poison frog <i>Andinobates daleswansoni</i>, an endemic threatened species of the Colombian Andes. The advertisement call consists of multiple pulsed notes, with an average dominant frequency of 4052.81 ± 154.93 Hz. This call sounds similar to the call of other <i>Andinobates</i> frogs, but there are clear differences in spectral and temporal features. Tadpoles have a depressed body, low compressed dorsal and ventral tail fins with a rounded tip. The oral disc has a labial tooth row formula of 2(2)/3(1), and a gap in the marginal papillae of the lower lip, whose status as a synapomorphy for the group <i>A. bombetes</i> is discussed. Like other poison frogs, the diet of <i>A. daleswansoni</i> consists of small arthropods (Acari, Hymenoptera, Coleoptera) that individuals capture in leaflitter. We recorded tadpole transport by males to phytotelmata in the Elephant Ear plant (<i>Xanthosoma robustum</i>) which demonstrate that <i>A. daleswansoni</i> has a greater niche breadth for tadpole development than previously recorded. Acoustic interactions and physical fights observed during an agonistic behaviour on the part of two males of <i>A. daleswansoni</i> is similar to those recorded in other poison frogs and possible associated to the occupation of resources such as availability of prey items and places for breeding.
DOI: 10.5258/soton/d1835
title: Dataset for Getting jammed in all directions: Dynamic shear jamming around a cylinder towed through a dense suspension

description: This dataset supports the publication: 'Getting jammed in all directions: Dynamic shear jamming around a cylinder towed through a dense suspension' by Olav Rømcke, Ivo R. Peters and R. Jason Hearst, Physical Review Fluids (2021)
DOI: 10.6084/m9.figshare.14644608.v2
title: Bacteria to birds

description: Raw data associated to <b>Metacommunities from bacteria to birds: stronger environmental selection in Mediterranean than in tropical ponds</b>
DOI: 10.25646/8540
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.13317668
title: Infestation of free-ranging reptiles by ticks of the genus <i>Amblyomma</i> (Acari: Ixodidae) in the state of Acre, western Brazilian Amazon

description: The ticks of the family Ixodidae are haematophagous mites that are known to parasitize an ample variety of vertebrates. The present study investigated the ticks associated with free-ranging reptiles in the state of Acre, western Brazilian Amazon. These reptiles were captured and identified between 2007 and 2013 during active searches, and through occasional encounters, in the municipalities of Rio Branco, Plácido de Castro, and Senador Guiomard. The tick specimens were preserved in 70% alcohol and identified using a stereomicroscope and taxonomic keys. The reptiles sampled included one lizard and 17 snakes, representing six families and 14 species. A total of 219 ticks were collected, including 74 <i>Amblyomma</i> larvae and 139 nymphs and six females of the species <i>Amblyomma humerale</i> and <i>Amblyomma rotundatum</i>. These findings amplify the known occurrence of ixodid ticks in Acre state, and represent the first records on of reptile as host of ticks in this state.
DOI: 10.6084/m9.figshare.13317668.v1
title: Infestation of free-ranging reptiles by ticks of the genus <i>Amblyomma</i> (Acari: Ixodidae) in the state of Acre, western Brazilian Amazon

description: The ticks of the family Ixodidae are haematophagous mites that are known to parasitize an ample variety of vertebrates. The present study investigated the ticks associated with free-ranging reptiles in the state of Acre, western Brazilian Amazon. These reptiles were captured and identified between 2007 and 2013 during active searches, and through occasional encounters, in the municipalities of Rio Branco, Plácido de Castro, and Senador Guiomard. The tick specimens were preserved in 70% alcohol and identified using a stereomicroscope and taxonomic keys. The reptiles sampled included one lizard and 17 snakes, representing six families and 14 species. A total of 219 ticks were collected, including 74 <i>Amblyomma</i> larvae and 139 nymphs and six females of the species <i>Amblyomma humerale</i> and <i>Amblyomma rotundatum</i>. These findings amplify the known occurrence of ixodid ticks in Acre state, and represent the first records on of reptile as host of ticks in this state.
DOI: 10.5519/qd.tbfcu7qn
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (7 records)
DOI: 10.5519/qd.zvks2u8g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (95 records)
DOI: 10.5285/ed1bc64e34a14ca28fedd2731735d18a
title: OpenIFS@home: ensemble of forecast simulations from Ex-tropical cyclone Karl case study

description: This dataset contains the 2000-member original validation test case for OpenIFS@home as presented in Sparrow et al 2021, GMD. These are results from an ensemble of forecast simulations of the tropical cyclone Karl from September 2016, studied during the NAWDEX field campaign. This cyclone underwent extratropical transition and intensified in mid-latitudes to give rise to an intense jet-streak near Scotland and heavy rainfall over Norway. The OpenIFS@Home data comprises output from the European Centre for Medium Range Weather Forecasts (ECMWF) OpenIFS model run under the BOINC framework and managed by http://climateprediction.net/ at the University of Oxford. OpenIFS is derived from ECMWF's IFS operational forecast model. The dataset consists of a 2000 member ensemble of the ECMWF OpenIFS cycle 40 release 1 model, run on the OpenIFS@home volunteer framework. The spatial resolution of the dataset is approximately 125km at the equator (corresponding to a spectral resolution of T159) with 60 vertical levels The model output data format is WMO GRIB. Single level parameters and surface fields use GRIB-1 format whilst multi-level upper air fields use GRIB-2 format To work with GRIB files requires the ECMWF ecCodes package. This software provides command line tools for linux/macOS for inspecting the contents of these files, such as listing parameters and meta-information The model output files are on the native IFS grid, the so-called reduced Gaussian grid, rather than a regular latitude-longitude grid commonly used in plotting. The ECMWF metview application can be used to produce plots directly from the model output files without the need to interpolate first. Other applications exist, such as the Climate Data Operators (CDO) that can be used to first convert the GRIB model output files to netCDF for use in other plotting packages. The data is arranged into subdirectories (one per ensemble member), each containing a zip file of the output GRIB data for that simulation. These follow the standard OpenIFS output format and represent 6 hourly snapshots throughout the forecast. The number in the filename denotes the hour of the forecast contained in each respective GRIB file
DOI: 10.5281/zenodo.4783161
title: Short-term and global-wide effusive volcanism on Mercury around 3.7 Ga

description: the metadata of the name, central coordinates, surface area, location of counting area, locations of collected craters, minimum crater diameter of completeness, and IDs of MDIS data used to perform the crater statistics of each site of smooth plains on Mercury.
DOI: 10.6084/m9.figshare.14661282
title: RNA_seq_bam

description: reporgramiring
DOI: 10.6084/m9.figshare.14661282.v2
title: RNA_seq_bam

description: reporgramiring
DOI: 10.6084/m9.figshare.14501985
title: Single-nuclei ATAC-Seq data from human atherosclerosis

description: <b>Summary</b><br><br>Single-cell ATAC-Seq data from human atherosclerosis. The files contain cells from endarterectomy samples from three donors, yielding approximately 7000 cells total. snATAC-Seq libraries were generated using the 10x Genomics scATAC-Seq v1 kit. The files were produced by the cellranger-atac v1.1 pipeline commands 'count' and 'aggr' (without normalization). The genome reference used was hg19 Reference v1.1.0. <br><br><br><b>Journal publication</b><br>Single-Cell Epigenomics and Functional Fine-Mapping of Atherosclerosis GWAS Loci<br>Tiit Örd, Kadri Õunap, Lindsey Stolze, Rédouane Aherrahrou, Valtteri Nurminen, Ilakya Selvarajan, Anu Toropainen, Tapio Lönnberg, Einari Aavik, Seppo Yla-Herttuala, Mete Civelek, Casey E Romanoski, and Minna U Kaikkonen<br>Circulation Research, https://www.ahajournals.org/doi/abs/10.1161/CIRCRESAHA.121.318971<br><br><br><br><b>Files available</b><br>The file formats are described in detail at https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/overview<br><b>1) cloupe-manual_cell_type_added.cloupe: </b><br>Loupe browser file for interactive browsing of the data. Includes a manual cell annotation into five principal cell lineages (smooth muscle cells, endothelial cells, macrophages, T/NK cells, and B/Plasma cells. For an overview of the Loupe Cell Browser ATAC software, please see https://support.10xgenomics.com/single-cell-atac/software/visualization/latest/what-is-loupe-cell-browser<br><br><b>2) fragments.tsv.gz and fragments.tsv.gz.tbi: </b><br>Fragments file and the corresponding index file. Contains ATAC fragment locations (cut sites) from the hg19 genome and the cell barcode associated with the fragment. Used for displaying coverage of cuts in genomic regions, and could be used for recalling of peaks. For full information of the table structure, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/fragments<br><b><br></b><b>3) matrix.mtx, peaks.bed and barcodes.tsv: </b><br>the peak-barcode matrix for cell-associated barcodes (contents of the "filtered_peak_bc_matrix" folder from cellranger-atac). Suitable for downstream analysis. For a full description of the matrix structure, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/matrices<br><br><b>4) peak_annotation.tsv: </b><br>annotations for the peaks called by cellranger-atac. For a description of how peaks were annotated to genes, please see https://support.10xgenomics.com/single-cell-atac/software/pipelines/1.1/output/annotation<br><br><br>
DOI: 10.6084/m9.figshare.14216588
title: Alignments of DNA sequences of green algae colonizing egg clutches of amphibians

description: Alignments of DNA sequences of green algae colonizing egg clutches of amphibians
DOI: 10.5517/ccdc.csd.cc26wg8v
title: CCDC 2052177: Experimental Crystal Structure Determination

description: Related Article: Isabel-Maria Ramirez y Medina, Markus Rohdenburg, Pascal Rusch, Daniel Duvinage, Nadja C. Bigall, Anne Staubitz|2021|Mat.Advs.|2|3282|doi:10.1039/D1MA00104C
DOI: 10.5517/ccdc.csd.cc26wg9w
title: CCDC 2052178: Experimental Crystal Structure Determination

description: Related Article: Isabel-Maria Ramirez y Medina, Markus Rohdenburg, Pascal Rusch, Daniel Duvinage, Nadja C. Bigall, Anne Staubitz|2021|Mat.Advs.|2|3282|doi:10.1039/D1MA00104C
DOI: 10.17909/t9-n5ef-9894
title: HST/STIS UV spectra of Galactic PNe

description: We carried out a snapshot survey of compact Galactic planetary nebulae (PNe) to acquire their UV spectra, with the aim of determining their gas-phase carbon abundances. Planetary nebulae are major cosmic recyclers, and their carbon content is essential to constrain the models of Asymptotic Giant Branch (AGB) evolution. There is an observed correlation between the gas and dust components of PNe in the Magellanic Clouds, but such a relation cannot yet be established for Galactic PNe given the lack of gas-phase carbon abundances of PNe whose dust composition is known. Our program measured carbon abundances for a set of compact Galactic PNe previously imaged with the HST cameras, whose dust content is known from IR/Spitzer spectral analysis, and whose ground-based optical spectra are also available from ancillary data sets. We studied carbon abundances of Galactic PNe in the framework of the yields from AGB evolution, especially with recent models that include dust evolution. Finally, compared the results of the Galactic study with similar studies based on LMC and SMC PNe, to gain insight of AGB evolution at different metallicities.
DOI: 10.6084/m9.figshare.14251409.v5
title: IPV_attachment study

description: IPV Study 1 datasetIPV Study 2 datasetIPV Methodology/supplemental files
DOI: 10.5281/zenodo.4783255
title: Dataset for "Code Smells Detection Using Artificial Intelligence Techniques: A Business-Driven Systematic Review"

description: Checklist and data extracted from publications analyzed for "Code Smells Detection Using Artificial Intelligence Techniques: A Business-Driven Systematic Review" paper
DOI: 10.5281/zenodo.4049068
title: Mining For Ligandable Cavities in RNA [Dataset and ML-Code]

description: Data and code to train models described in the manuscript: Mining For Ligandable Cavities in RNA (DOI: 10.1021/acsmedchemlett.1c00068)
DOI: 10.5281/zenodo.4049067
title: Mining For Ligandable Cavities in RNA [Dataset and ML-Code]

description: Data and code to train models described in the manuscript: Mining For Ligandable Cavities in RNA (DOI: 10.1021/acsmedchemlett.1c00068)
DOI: 10.6084/m9.figshare.13906433
title: Ring opening copolymerization of a ᴅ-xylose anhydrosugar oxetane with cyclic anhydrides: primary NMR spectroscopic data of polymers

description: Data to support article:<br> <b>Polymers from Sugars and Cyclic Anhydrides: Ring Opening Copolymerization of a ᴅ-Xylose Anhydrosugar Oxetane <br></b><b><br></b> Journal: <i>Macromolecules</i>https://doi.org/10.1021/acs.macromol.1c00365<br><i>Authors:</i><i> Thomas M. McGuire, Ella F. Clark and Antoine Buchard* <br></i><i><br></i>Department of Chemistry, Centre for Sustainable and Circular Technologies, University of Bath, Claverton Down, Bath BA2 7AY, UK <i><br></i><i><br></i><i>*Email: a.buchard@bath.ac.uk</i><i><br></i>Description: - Primary NMR spectroscopic data for polyesters described in the article.<br> Content: - zip file<br>- one folder per polymer synthesized- subfolders with 1H, 13C, COSY, HSQC, HMBC NMR spectroscopic primary data (FID file), additional information about spectra acquisition (.doc file), and polymer chemical structure (.mol file)<br>