cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10246940
title: Experience Sampling of autobiographical and prospective memories DATASET.xlsx

description: Experience sampling was used to quantify the frequency of autobiographical and prospective memory (AM; PM) in everyday settings. Subjects received random cell-phone prompts throughout daily life and recorded whether they were engaged in AM or PM at the time of each prompt. If a subject was not engaged in a memory at the time of a given call, a dash was recorded to indicate the call was received but no memory was interrupted. Thus, the AM or PM hit rate for a given subject reflected the proportion of time they engaged in these types of recollection. If a prompt interrupted an AM or PM thought, the duration in seconds of the memory was also estimated and recorded by the participant. This experience sampling dataset is uploaded as an Excel file and as a CSV file.<br><br>See Gardner and Ascoli, 2015 (https://doi.org/10.1037/a0038876) for full detail.<br>
DOI: 10.6084/m9.figshare.10246952.v2
title: TGowler Resources

description: The dataset presents input/output data for the TGOWLeR framework. TGOWLeR abstracts general patterns from workflow sequences previously extracted from texts. It comprises two modules –a workflow extractor and a pattern miner– both relying on a specific domain ontology.The <em>input</em> of the first module is an RDF/ZIPPED ontology (tgowler_resource_ontologies_PHAGE_1.0.rdf.zip) and a set of un-annotated articles (<em>e.g.</em>, datastore_2018_2019.zip). The proposed pipeline (implemented in GATE 8.1) will <em>produce</em> annotated texts (<em>e.g.</em>, annotated_2018_2019.zip) and their corresponding workflows (<em>e.g.</em>, WFMiner_WF_2018_2019.xml).The <em>input</em> of the second module is the serialized ontology ... PubMed published articles from 2018-01-01 to 2019-10-01
DOI: 10.6084/m9.figshare.10246958.v2
title: The Cue-Recalled Autobiographical Memory Test DATASET

description: The CRAM (Cue-Recalled Autobiographical Memory) test prompts autobiographical memories (AMs) using naturalistic word-cues. Participants date the memories to life periods and subsequently report the numbers of details remembered across eight content categories or features (e.g., spatial detail, temporal detail, emotions, objects, and people). The test collected AMs from the local George Mason University community and as it was made available online, from internet-browsing individuals. The dataset provided herein for public data mining contains 14,242 AMs scored for content from 4,244 users. The full set of raw data is uploaded.<br>See Gardner et al., 2012 (https://doi.org/10.1371/journal.pone.0044809) and Gardner et al., 2015 (https://doi.org/10.3389.fpsyg.2015.00631) for full detail.
DOI: 10.6084/m9.figshare.10246826
title: Victorian insect COI sequences

description: A FASTA file containing Cytochrome Oxidase I (COI) sequences for insect species found in Victoria, Australia. It includes both mosquito and biting midge species.
DOI: 10.6084/m9.figshare.10246940.v1
title: Experience Sampling of autobiographical and prospective memories DATASET.xlsx

description: Experience sampling was used to quantify the frequency of autobiographical and prospective memory (AM; PM) in everyday settings. Subjects received random cell-phone prompts throughout daily life and recorded whether they were engaged in AM or PM at the time of each prompt. If a subject was not engaged in a memory at the time of a given call, a dash was recorded to indicate the call was received but no memory was interrupted. Thus, the AM or PM hit rate for a given subject reflected the proportion of time they engaged in these types of recollection. If a prompt interrupted an AM or PM thought, the duration in seconds of the memory was also estimated and recorded by the participant.<br>See Gardner and Ascoli, 2015 (https://doi.org/10.1037/a0038876) for full detail.<br>
DOI: 10.6084/m9.figshare.10246940.v2
title: Experience Sampling of autobiographical and prospective memories DATASET.xlsx

description: Experience sampling was used to quantify the frequency of autobiographical and prospective memory (AM; PM) in everyday settings. Subjects received random cell-phone prompts throughout daily life and recorded whether they were engaged in AM or PM at the time of each prompt. If a subject was not engaged in a memory at the time of a given call, a dash was recorded to indicate the call was received but no memory was interrupted. Thus, the AM or PM hit rate for a given subject reflected the proportion of time they engaged in these types of recollection. If a prompt interrupted an AM or PM thought, the duration in seconds of the memory was also estimated and recorded by the participant.<br>See Gardner and Ascoli, 2015 (https://doi.org/10.1037/a0038876) for full detail.<br>
DOI: 10.6084/m9.figshare.10246826.v2
title: Victorian vector COI sequences

description: A FASTA file containing Cytochrome Oxidase I (COI) sequences for vector species found in Victoria, Australia. It includes both mosquito and biting midge species.
DOI: 10.6084/m9.figshare.10242938
title: Supporting infromation files: Protracted multipulse emplacement of a post-resurgent pluton: the case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)

description: This supporting information file contains data tables of the sensitive high resolution ion microprobe with reversed geometry (SHRIMP-RG) U-Pb zircon dating and anisotropy ofmagnetic susceptibility (AMS) analyses. We also present igures showing the Summitville Andesite and Chiquito Peak Tuff microstructure, and spatial distribution of AMS parametersin the Alamosa River pluton and its host rocks.
DOI: 10.6084/m9.figshare.10243400
title: Measuring affect-related cognitive bias: do mice in opposite affective states react differently to negative and positive stimuli?

description: Data to accompany publication Trevarthen et al: Measuring affect-related cognitive bias: do mice in opposite affective states react differently to negative and positive stimuli?<br>One file contains individual mouse latency (s) to traverse the runway for each training and test trial. These data were used to calculate the ratio of runway latency during habituation to test.<br>The other file contains individual mouse data (latency to approach object, time spent in stimulus presentation area and latency to complete runway (s)) for test trials only
DOI: 10.6084/m9.figshare.10243400.v1
title: Measuring affect-related cognitive bias: do mice in opposite affective states react differently to negative and positive stimuli?

description: Data to accompany publication Trevarthen et al: Measuring affect-related cognitive bias: do mice in opposite affective states react differently to negative and positive stimuli?<br>One file contains individual mouse latency (s) to traverse the runway for each training and test trial. These data were used to calculate the ratio of runway latency during habituation to test.<br>The other file contains individual mouse data (latency to approach object, time spent in stimulus presentation area and latency to complete runway (s)) for test trials only
DOI: 10.6084/m9.figshare.10232912
title: Drgt24.2_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 24 hpi to detect intestinal flora changes (biological replicate 2)
DOI: 10.6084/m9.figshare.10242938.v1
title: Supporting infromation files: Protracted multipulse emplacement of a post-resurgent pluton: the case of Platoro caldera complex (Southern Rocky Mountain volcanic field, Colorado)

description: This supporting information file contains data tables of the sensitive high resolution ion microprobe with reversed geometry (SHRIMP-RG) U-Pb zircon dating and anisotropy ofmagnetic susceptibility (AMS) analyses. We also present igures showing the Summitville Andesite and Chiquito Peak Tuff microstructure, and spatial distribution of AMS parametersin the Alamosa River pluton and its host rocks.
DOI: 10.6084/m9.figshare.10232408
title: Drgt12.1_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 12 hpi to detect intestinal flora changes (biological replicate 1)
DOI: 10.6084/m9.figshare.10232771
title: Drgt24.1_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 24 hpi to detect intestinal flora changes (biological replicates 1)
DOI: 10.6084/m9.figshare.10232912.v1
title: Drgt24.2_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 24 hpi to detect intestinal flora changes (biological replicate 2)
DOI: 10.6084/m9.figshare.10232639
title: Drgt12.2_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 12 hpi to detect intestinal flora changes (biological replicate 2)
DOI: 10.6084/m9.figshare.10232249
title: Drgc.2_clean reads

description: Control group injected by PBS (biological replicate 2)
DOI: 10.6084/m9.figshare.10232771.v2
title: Drgt24.1_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 24 hpi to detect intestinal flora changes (biological replicates 1)
DOI: 10.6084/m9.figshare.10232408.v1
title: Drgt12.1_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 12 hpi to detect intestinal flora changes (biological replicate 1)
DOI: 10.6084/m9.figshare.10232249.v1
title: Drgc.2_clean reads

description: Control group injected by PBS (biological replicate 2)
DOI: 10.6084/m9.figshare.10232639.v1
title: Drgt12.2_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 12 hpi to detect intestinal flora changes (biological replicate 2)
DOI: 10.6084/m9.figshare.10232771.v1
title: Drgt24.2_clean reads

description: zebrafish infected with Streptococcus agalactiae was collected at 24 hpi to detect intestinal flora changes (biological replicates 1)
DOI: 10.6084/m9.figshare.10229453
title: virus_matrix

description: Count data for viral species.
DOI: 10.6084/m9.figshare.10230827
title: Test data for PTN-EHN operation.xlsx

description: 1) Test data for the coupled PTN-EHN network are included.2) Refer to my paper "Power and Traffic Nexus: From Perspective of Power Transmission Network and Electrified Highway Network" if published online.
DOI: 10.6084/m9.figshare.10231358
title: Drgc.1_clean reads

description: Themicrobiota community in zebrafish intestine treated by PBS (biological replicate 1)
DOI: 10.6084/m9.figshare.10229129
title: mosquito_matrix

description: Count table for mosquito species
DOI: 10.6084/m9.figshare.10231358.v1
title: Drgc.1_clean reads

description: Themicrobiota community in zebrafish intestine treated by PBS (biological replicate 1)
DOI: 10.6084/m9.figshare.10226639
title: Data for "Correlated evolution of diaspore traits and potential frugivore-mediated selection in a fleshy-fruited tropical lineage (Artabotrys, Annonaceae)"

description: Appendix I. Voucher information and sample size of seeds used in this study. Appendix II. Diaspore trait and climatic data of <i>Artabotrys</i> species used in this study. Quantitative traits are summarised as species means prior to log-transformation. L = thick pericarp; P = thin pericarp; R = rough testa; S = smooth testa. Appendix III. R scripts used for phylogenetic regression. Appendix IV. R scripts used for fitting seed trait data to Brownian Motion and Ornstein-Uhlenbeck models of trait evolution.Appendix V. Analysis of seed volume and seed coat thickness in the widespread species <i>Artabotrys suaveolens</i> (<i>n</i> = 11). <br>
DOI: 10.6084/m9.figshare.10229129.v1
title: mosquito_matrix

description: Count table for mosquito species
DOI: 10.6084/m9.figshare.10220795
title: MOESM9 of Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarianâ bilaterian common ancestor

description: Additional file 9: Table S2. Unedited amino acid alignment. The unedited protein alignment of confirmed bilaterian muscarinic and nicotinic acetylcholine receptors, GABAergic receptors, a confirmed Hydra muscarinic acetylcholine receptor, and the potential N. vectensis nicotinic acetylcholine receptors and cnidarian nicotinic acetylcholine receptors. Asterisks indicate the cysteines that make up the cysteine loop that defines the family.
DOI: 10.6084/m9.figshare.10226639.v1
title: Data for "Correlated evolution of diaspore traits and potential frugivore-mediated selection in a fleshy-fruited tropical lineage (Artabotrys, Annonaceae)"

description: Appendix I. Voucher information and sample size of seeds used in this study. Appendix II. Diaspore trait and climatic data of <i>Artabotrys</i> species used in this study. Quantitative traits are summarised as species means prior to log-transformation. L = thick pericarp; P = thin pericarp; R = rough testa; S = smooth testa. Appendix III. R scripts used for phylogenetic regression. Appendix IV. R scripts used for fitting seed trait data to Brownian Motion and Ornstein-Uhlenbeck models of trait evolution.Appendix V. Analysis of seed volume and seed coat thickness in the widespread species <i>Artabotrys suaveolens</i> (<i>n</i> = 11). <br>
DOI: 10.6084/m9.figshare.10220795.v1
title: MOESM9 of Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarianâ bilaterian common ancestor

description: Additional file 9: Table S2. Unedited amino acid alignment. The unedited protein alignment of confirmed bilaterian muscarinic and nicotinic acetylcholine receptors, GABAergic receptors, a confirmed Hydra muscarinic acetylcholine receptor, and the potential N. vectensis nicotinic acetylcholine receptors and cnidarian nicotinic acetylcholine receptors. Asterisks indicate the cysteines that make up the cysteine loop that defines the family.
DOI: 10.6084/m9.figshare.10220765
title: MOESM4 of Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarian–bilaterian common ancestor

description: Additional file 4: Table S1. Primers used for amplification. Each gene is listed as named in the paper and with the N. vectensis JGI gene ID name. Forward primer is on top and reverse primer is on the bottom for each gene listed. All primers are 5′ → 3′.
DOI: 10.6084/m9.figshare.10220765.v1
title: MOESM4 of Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarian–bilaterian common ancestor

description: Additional file 4: Table S1. Primers used for amplification. Each gene is listed as named in the paper and with the N. vectensis JGI gene ID name. Forward primer is on top and reverse primer is on the bottom for each gene listed. All primers are 5′ → 3′.
DOI: 10.6084/m9.figshare.10220714
title: MOESM10 of Characterization of nAChRs in Nematostella vectensis supports neuronal and non-neuronal roles in the cnidarianâ bilaterian common ancestor

description: Additional file 10: Table S3. Edited amino acid alignment consisting of transmembrane domains and double cysteines necessary for acetylcholine binding. A protein alignment of confirmed bilaterian muscarinic and nicotinic acetylcholine receptors, GABAergic receptors, a confirmed Hydra muscarinic acetylcholine receptor, a potential N. vectensis nicotinic acetylcholine receptor and a cnidarian nicotinic acetylcholine receptor. Protein sequences were edited to consist of the four conserved transmembrane domains (TM1â TM4) and the double cysteines necessary for acetylcholine binding (denoted by asterisks).
DOI: 10.6084/m9.figshare.10214915
title: Complete sequence of the plasmid pCYPE12-tetX4

description: With MinION nanopore sequecing and Flye assembly tool, the fusion plasmid pCYPE12-tetX4 was sequenced and de novo assembled completely. It should be noted that the accuracy of SNP or indel may happen without short-read data polish.
DOI: 10.6084/m9.figshare.10216631
title: Response and predictor variables used to study the species-level drivers of mammalian ectoparasite faunas

description: Response and predictor variables used to study the species-level drivers of mammalian ectoparasite faunas
DOI: 10.6084/m9.figshare.10210025
title: Gaither et al. PLOS ONE Data Set

description: Data for Figures 2 through 6 of manuscript, Expression of activating transcription factor 5 (ATF5) is mediated by microRNA-520b-3p under diverse cellular stress in cancer cells PLOS ONE (accepted)<br>Data from dual luciferase assay, western blot analysis, and Real Time qPCR data.<br><br>
DOI: 10.6084/m9.figshare.10210964
title: Quantitation of row 1 proteins during after tubocurarine block in culture

description: Each file is for a single mature row 1 complex member, examining its distribution in mouse inner hair cells in the presence or absence of transduction channel block. Cochleas were dissected at P4.5 and cultured in in vitro for two days in control solution or 100 µM tubocurarine. The first two to three tabs in each file represent data from different experiments. Each block of 12 measurements is from a single hair bundle. The next-to-last tab has the average of all row 1 + 2 measurements, giving total expression in those rows. The last tab compares rows 1 and 2.<br>We estimated the total immunofluorescence signal in the top 1-2 µm of each tip. Airyscan z-stacks were imported into Fiji Software, which was used for all analysis steps. For analysis of P7.5 mutant mice, average Z-projections of Airyscan stacks were made that included row 1 and row 2 tips in the same projection. For analysis of P21.5 mutant mice, due to increased height variability, Regions of Interest (ROIs) were selected at row 1 or row 2 tips within individual x-y slices from the z-stacks. Images were kept as multi-channel stacks and phalloidin was used to guide selection at the tips of each row. Regions of interest (ROIs) used circles that encompassed most of each tip. Area and average intensity measurements were made from ten or more row 1 tips and ten or more row 2 tips, and blank measurements were taken from volumes outside the stereocilia and above the epithelium. The total signal (area times average intensity) in each stereocilia tip volume was calculated after subtracting the background. For each hair bundle, the average signal in rows 1 and 2 was calculated, which was used to normalize the individual row 1 and row 2 stereocilia tip signals within each bundle. The average signal row 1 and 2 signal for each bundle was also used for comparison of expression levels at different developmental times or between control and mutant mice. For comparisons between control and tubocurarine block, the average signal for control bundles on a given experimental day was used to normalize all samples, allowing comparison of controls and channel block with identical acquisition parameters.<br>
DOI: 10.6084/m9.figshare.10210964.v1
title: Quantitation of row 1 proteins during after tubocurarine block in culture

description: Each file is for a single mature row 1 complex member, examining its distribution in mouse inner hair cells in the presence or absence of transduction channel block. Cochleas were dissected at P4.5 and cultured in in vitro for two days in control solution or 100 µM tubocurarine. The first two to three tabs in each file represent data from different experiments. Each block of 12 measurements is from a single hair bundle. The next-to-last tab has the average of all row 1 + 2 measurements, giving total expression in those rows. The last tab compares rows 1 and 2.<br>We estimated the total immunofluorescence signal in the top 1-2 µm of each tip. Airyscan z-stacks were imported into Fiji Software, which was used for all analysis steps. For analysis of P7.5 mutant mice, average Z-projections of Airyscan stacks were made that included row 1 and row 2 tips in the same projection. For analysis of P21.5 mutant mice, due to increased height variability, Regions of Interest (ROIs) were selected at row 1 or row 2 tips within individual x-y slices from the z-stacks. Images were kept as multi-channel stacks and phalloidin was used to guide selection at the tips of each row. Regions of interest (ROIs) used circles that encompassed most of each tip. Area and average intensity measurements were made from ten or more row 1 tips and ten or more row 2 tips, and blank measurements were taken from volumes outside the stereocilia and above the epithelium. The total signal (area times average intensity) in each stereocilia tip volume was calculated after subtracting the background. For each hair bundle, the average signal in rows 1 and 2 was calculated, which was used to normalize the individual row 1 and row 2 stereocilia tip signals within each bundle. The average signal row 1 and 2 signal for each bundle was also used for comparison of expression levels at different developmental times or between control and mutant mice. For comparisons between control and tubocurarine block, the average signal for control bundles on a given experimental day was used to normalize all samples, allowing comparison of controls and channel block with identical acquisition parameters.<br>
DOI: 10.6084/m9.figshare.10214915.v1
title: Complete sequence of the plasmid pCYPE12-tetX4

description: With MinION nanopore sequecing and Flye assembly tool, the fusion plasmid pCYPE12-tetX4 was sequenced and de novo assembled completely. It should be noted that the accuracy of SNP or indel may happen without short-read data polish.
DOI: 10.6084/m9.figshare.10203530
title: raw-metabolic-marker-results-high-qual-genomes

description: Raw metabolic marker HMM search results for markers spanning carbon, nitrogen, and sulfur cycles, including metal resistance genes among high-quality putative methylating genomes. Genome names are the names of the files included in the metadata file
DOI: 10.6084/m9.figshare.10210025.v2
title: Gaither et al. PLOS ONE Data Set

description: Data for Figures 2 through 6 of manuscript, Expression of activating transcription factor 5 (ATF5) is mediated by microRNA-520b-3p under diverse cellular stress in cancer cells PLOS ONE (accepted)<br>Data from dual luciferase assay, western blot analysis, and Real Time qPCR data.<br><br>
DOI: 10.6084/m9.figshare.10210025.v1
title: Kari A Gaither, Christy JW Watson, Bhanupriya Madarampalli, David X Liu, and Philip Lazarus. Expression of activating transcription factor 5 (ATF5) is mediated by microRNA-520b-3p under diverse cellular stress in cancer cells PLOS ONE (accepted)

description: Data for Figures 2 through 6 of manuscript, to include dual luciferase assay, western blot analysis, and Real Time qPCR data.