cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.20350/digitalcsic/8505
title: Dissolved carbon dioxide within aquatic areas of Doñana Natural Area (2010-2013)

description: This data set includes measurements of water samples collected from 11 water bodies (n = 8 to 30 per water body) between March 2010 and March 2013 within Doñana Natural Area. Geographic coordinates of sampling positions and a Google Earth .kml file are provided.
description: Approximately every 30 days in situ water conductivity (converted to salinity), temperature and pH were measured using a multi-probe (YSI-6920V2, YSI Incorporated, Yellow Springs, Ohio, USA) and filtered water samples were collected for laboratory analysis of dissolved phosphate, silica (using a Skalar San^++ 215 Continuous Flow Analyzer) and total alkalinity (using a Metrohm 794 Titroprocessor following the method described by Mintrop et al. (2000) (http://hdl.handle.net/10261/25136). Dissolved carbon dioxide partial pressure was calculated from pH and total alkalinity using co2sys.xls (Pierrot et al., 2000) (http://cdiac.ornl.gov/ftp/co2sys/CO2SYS_calc_XLS_v2.1/) with the dissociation constants for carbon and sulphate of (Cai and Wang 1998) and (Dickson 1990) (https://doi.org/10.1016/0021-9614(90)90074-Z), respectively.
description: Atmospheric partial pressure of CO2 (μatm) was obtained from the NOAA (National Oceanic and Atmospheric Administration, USA) monitoring station in Izaña, Spain (Site: IZO, http://www.esrl.noaa.gov/gmd/dv/site/).
description: Daily measurements of rainfall (mm), air temperature (ºC) and wind speed (m s-1) were provided by a meteorological station located in Lebrija (36º 58’ 35’‘N, 06º 07’ 34’’ W) maintained by the Junta de Andalucia (www.juntadeandalucia.es/agriculturaypesca/ifapa/ria/servlet/FrontController).
description: Estimates of the areal extent of the water bodies derived via remote sensing (Landsat image archive, (http://landsat.usgs.gov/) within each wetland region of Donana Natural Area are included to allow up-scaling of fluxes to regional air-water C transport rates. A Google Earth .kml file delineating the wetland regions is provided.
description: The data is provided as [space] delimitated plain text files and Google Earth .kml and .kmz files within a compressed folder that also includes a single README file (in markdown format converted to HTML and PDF) containing a detailed description of the data structure.
description: This dataset is subject to a Creative Commons License Attribution-ShareAlike 4.0 International.
description: This data set includes recently published data used to calculate air-water carbon dioxide fluxes within aquatic areas of Doñana Natural Area, SW Spain (Long: -6.373, Lat: 36.932, Datum: WSG84) between March 2010 and May 2013.
DOI: 10.20350/digitalcsic/8524
title: Acquisition of Uropygial Gland Microbiome by Hoopoe Nestlings : datos complementarios

description: Datos complementarios del artículo: “Acquisition of Uropygial Gland Microbiome by Hoopoe Nestlings” publicado en Microbial Ecology (ISSN:0095-3628). DOI: https://doi.org/10.1007/s00248-017-1125-5
DOI: 10.20350/digitalcsic/8526
title: Global cytosine methylation, genetic markers (AFLP) and epigenetic markers (MSAP) in 15 maternal plants of the shrub Lavandula latifolia (Lamiaceae) and their offspring

description: This contains three Microsoft Excel files for global methylation, AFLP and MSAP data, respectively. On each file one sheet contains the information of maternal plants and the other the information of the offspring. Each row refers to individual samples. For AFLP and MSAP each column refers to specific (although anonymous) markers labeled similarly in both sheets. Leaves from 15 adult plants were sampled along a 125-m transect in Cuevas Bermejas population (Sierra de Cazorla, Jaén Province, southeastern Spain), in October 2015. Offspring were obtained from seeds under greenhouse conditions, leaf samples were collected when they were 8-months old when only offspring of 13 mothers remained. DNA was extracted from leaves using Qiagen DNeasy Plant Mini Kit and the manufacturer protocol. Maternal parents and greenhouse plants were genetically fingerprinted using amplified fragment polymorphism (AFLP) markers. The AFLP and MSAP analysis were performed using standard protocols involving the use of fluorescent dye-labeled selective primers. For AFLP, each plant was fingerprinted using three different EcoRI + 3 / MseI + 3 primer pair combinations. MSAP assays used four HpaII-MspI + 2 / MseI + 3 primer combinations. In the two analyses fragment separation and detection was made using an ABI PRISM 3130xl DNA sequencer, only fragments ≥ 150 base pairs in size were considered and the presence (1) or absence (0) of fragments in each sample was scored manually by visualizing electropherograms with GeneMapper 3.7 software
description: This dataset includes (i) global DNA cytosine methylation estimates (= percentage of all genomic cytosines that are methylated) obtained by reverse phase HPLC with spectrofluorimetric detection, (ii) the scoring (presence/absence) of individual genetic markers (AFLP), and (iii) the scoring (presence/absence) of individual epigenetic markers (MSAP) in maternal plants of the shrub Lavandula latifolia and their greenhouse-grown offspring. This dataset is under a Creative Commons Attribution-Non commercial 4.0 International License. Primary contact for details: Carlos M. Herrera
DOI: 10.5523/bris.3nfgkcm2ce6eg28rt02u86murj
title: CFS in the NHS

description: NHS specialist chronic fatigue syndrome (CFS/ME) services in England treat approximately 8000 adult patients each year. Variation in therapy programmes and treatment outcomes across services has not been described. In this project, we described treatments provided by 11 CFS/ME specialist services and we measured changes in patient-reported fatigue (Chalder, Checklist Individual Strength), function (SF-36 physical subscale, Work & Social Adjustment Scale), anxiety and depression (Hospital Anxiety & Depression Scale), pain (visual analogue rating), sleep (Epworth, Jenkins), and overall health (Clinical Global Impression) 1 year after the start of treatment, plus questions about impact of CFS/ME on employment, education/training and domestic tasks/unpaid work. A subset of these outcome measures was collected from former patients 2-5 years after assessment at 7 of the 11 specialist services. This study was funded by NIHR (PDF-2013-06-011).
DOI: 10.20350/digitalcsic/8506
title: Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx

description: [Background] The Iberian lynx (Lynx pardinus) has been acknowledged as the most endangered felid species in the world. An intense contraction and fragmentation during the 20th century left less than 100 individuals split in two isolated and genetically eroded populations by 2002. Genetic monitoring and management so far have been based on 36 STRs, but their limited variability and the more complex situation of current populations demand more efficient molecular markers. The recent characterization of the Iberian lynx genome identified more than 1.6 million SNPs, of which 1,536 were selected and genotyped in an extended Iberian lynx sample.
description: [Methods] We validated 1,492 SNPs and analysed their heterozygosity, Hardy-Weinberg equilibrium, and linkage disequilibrium. We then selected a panel of 343 minimally linked autosomal SNPs from which we extracted subsets optimized for four different typical tasks in conservation applications: individual identification, parentage assignment, relatedness estimation, and admixture classification, and compared their power to currently used STR panels.
description: [Results] We ascribed 21 SNPs to chromosome X based on their segregation patterns, and identified one additional marker that showed significant differentiation between sexes. For all applications considered, panels of autosomal SNPs showed higher power than the currently used STR set with only a very modest increase in the number of markers.
description: [Conclusions] These novel panels of highly informative genome-wide SNPs provide more powerful, efficient, and flexible tools for the genetic management and non-invasive monitoring of Iberian lynx populations. This example highlights an important outcome of whole-genome studies in genetically threatened species.
description: 1. SNP dataset: 1492 markers; 329 individuals.-- 2. STR dataset: 36 markers; 463 individuals.csv
DOI: 10.20350/digitalcsic/8507
title: Plant survival and keystone pollinator species in stochastic coextinction models: role of intrinsic dependence on animal-pollination

description: Coextinction models are useful to understand community robustness to species loss and resilience to disturbances. We simulated pollinator extinctions in pollination networks by using a hybrid model that combined a recently developed stochastic coextinction model (SCM) for plant extinctions and a topological model (TCM) for animal extinctions. Our model accounted for variation in interaction strengths and included empirical estimates of plant dependence on pollinators to set seeds. The stochastic nature of such model allowed us determining plant survival to single (and multiple) extinction events, and identifying which pollinators (keystone species) were more likely to trigger secondary extinctions. Consistently across three different pollinator removal sequences, plant robustness was lower than in a pure TCM, and plant survival was more determined by dependence on the mutualism than by interaction strength. As expected, highly connected and dependent plants were the most sensitive to pollinator loss and collapsed faster in extinction cascades. We predict that the relationship between dependence and plant connectivity is crucial to determine network robustness to interaction loss. Finally, we showed that honeybees and several beetles were keystone species in our communities. This information is of great value to foresee consequences of pollinator losses facing current global change and to identify target species for effective conservation.
DOI: 10.15468/mzd64a
title: Recent surveys of bats from the Andaman Islands, India: diversity, distribution, and echolocation characteristics

description: This dataset contains the digitized treatments in Plazi based on the original journal article Srinivasulu, Chelmala, Srinivasulu, Aditya, Srinivasulu, Bhargavi, Gopi, Asad, Dar, Tauseef Hamid, Bates, Paul J. J., Rossiter, Stephen J., Jones, Gareth (2017): Recent surveys of bats from the Andaman Islands, India: diversity, distribution, and echolocation characteristics. Acta Chiropterologica 19 (2): 419-437, DOI: 10.3161/15081109ACC2017.19.2.018
DOI: 10.20350/digitalcsic/1131
title: Data set used in the paper: “Salvador, R., Bautista-Capetillo, C., Burguete, J., Zapata, N. and Playán, E. 2009. A photographic methodology for drop characterization in agricultural sprinklers. Irrigation Science, 27: 307–317.”

description: 1 excel file with all data. This data set on drop analysis is completed with the OA data available in http://digital.csic.es/handle/10261/127635
description: [ES] Esta es la base de datos experimentales usada en el artículo de referencia (Irrigation Science, 27: 307–317 (2009), http://hdl.handle.net/10261/13602)
description: [EN] This is the experimental data set used in the paper of reference ((Irrigation Science, 27: 307–317 (2009), http://hdl.handle.net/10261/13602)
DOI: 10.20350/digitalcsic/228
title: SPEIbase: a global 0.5º gridded SPEI data base (I. NetCDF)

description: The dataset is freely available on the web repository of the Spanish National Research Council (CSIC) in three different formats (NetCDF, binary raster, and plain text).
description: Format: netcdf The netcdf archive is composed of 96 zipped files containing the spei dataset from 1901 to 2006 at 1 to 48 months time scales, separated for the East hemisphere (i.e. Europa, Africa, Asia and Australia) and the West hemisphere (the Americas). Each zipped file contains one single netCDF file (.nc), i.e. no header files are necessary because all necessary meta-data are self-contained in the .nc file. Naming convention spei_[tempscale]_[hemisphere].zip, where [tempscale] is a number between 1 and 48 indicating the temporal scale of the index (months), and [hemisphere] indicates the fraction of the World covered and can have values eh (East hemisphere) or wh (West hemisphere). Example: spei_12_eh.zip
description: The Global 0.5° gridded SPEI dataset is made available under the Open Database License. Any rights in individual contents of the database are licensed under the Database Contents License. Users of the dataset are free to share, create and adapt under the conditions of attribution and share-alike. Use of the newest version is recommended. Older versions are still available to allow replicability.
description: All currently available gridded drought datasets at continental and global scales are based on either the PDSI or the sc-PDSI. A new global drought dataset based on the Standardised Precipitation-Evapotranspiration Index (SPEI) has been developed, which covers time scales from 1-48 months at a spatial resolution of 0.5°, and provides temporal coverage for the period 1901-2006. This dataset represents an improvement in spatial resolution and operative capability of previous gridded drought datasets based on the PDSI, and enables identification of various drought types.
description: A monthly global dataset of a multiscalar drought index is presented and compared in terms of spatial and temporal variability with the existing continental and global drought datasets based on the Palmer drought severity index (PDSI, scPDSI). The new dataset is based on the standardized precipitation evapotranspiration index (SPEI). The index was obtained from the CRU TS3.0 data, covering time scales from 1 to 48 months for the period 1901-2006, and has a spatial resolution of 0.5°. The advantages of the new dataset are that: i) it improves the spatial resolution of the unique global drought dataset at a global scale; ii) it is spatially and temporally comparable to other datasets, given the probabilistic nature of the SPEI, and, in particular; iii) it enables identification of various drought types, given the multiscalar character of the SPEI. More details at: http://www.eead.csic.es/spei/spei.html
DOI: 10.20350/digitalcsic/229
title: SPEIbase: a global 0.5º gridded SPEI data base (plain text)

description: The dataset is freely available on the web repository of the Spanish National Research Council (CSIC) in three different formats (NetCDF, binary raster, and plain text).
description: Format: The plain text archive is composed of 576 zipped files, corresponding to the SPEI index at time scales between 1 and 48 months for the whole World and divided by decades (except the last file, containing only data for the period 2001-2006). Each zipped file contains one plain text file (.csv). Data on those files are separated by commas, ′,'. Naming convention: spei[tempscale]_[decade].zip, where [tempscale] is a number between 1 and 48 indicating the temporal scale of the index (months), and [decade] indicates the years of data contained in the file. Example: spei12_1910-1919.zip. Data are stored as plain text separated by commas, ','. Each file contains the following columns: GRAPH_ID (cell identification), X (longitude coordinate), Y (latitude coordinate), mmmaaaa (the monthly SPEI values, e.g. Jan1910).
description: The Global 0.5° gridded SPEI dataset is made available under the Open Database License. Any rights in individual contents of the database are licensed under the Database Contents License. Users of the dataset are free to share, create and adapt under the conditions of attribution and share-alike. Use of the newest version is recommended. Older versions are still available to allow replicability.
description: All currently available gridded drought datasets at continental and global scales are based on either the PDSI or the sc-PDSI. A new global drought dataset based on the Standardised Precipitation-Evapotranspiration Index (SPEI) has been developed, which covers time scales from 1-48 months at a spatial resolution of 0.5°, and provides temporal coverage for the period 1901-2006. This dataset represents an improvement in spatial resolution and operative capability of previous gridded drought datasets based on the PDSI, and enables identification of various drought types.
description: A monthly global dataset of a multiscalar drought index is presented and compared in terms of spatial and temporal variability with the existing continental and global drought datasets based on the Palmer drought severity index (PDSI, scPDSI). The new dataset is based on the standardized precipitation evapotranspiration index (SPEI). The index was obtained from the CRU TS3.0 data, covering time scales from 1 to 48 months for the period 1901-2006, and has a spatial resolution of 0.5°. The advantages of the new dataset are that: i) it improves the spatial resolution of the unique global drought dataset at a global scale; ii) it is spatially and temporally comparable to other datasets, given the probabilistic nature of the SPEI, and, in particular; iii) it enables identification of various drought types, given the multiscalar character of the SPEI. More details at: http://www.eead.csic.es/spei/spei.html
DOI: 10.20350/digitalcsic/2879
title: Data set used in the paper: “Bautista-Capetillo, C. F., Salvador, R., Burguete, J., Montero, J., Tarjuelo, J. M., Zapata, N., Gonzalez, J., and Playán, E. 2009. Comparing methodologies for the characterization of water drops emitted by an irrigation sprinkler. Transactions of the ASABE, 52(5), 1493-1504.”

description: 1 excel file with all data. This data set on drop analysis is completed with the OA data available in http://digital.csic.es/handle/10261/127640
description: [ES] Esta es la base de los datos experimentales usados en el artículo científico de referencia (Transactions of the ASABE, 52(5), 1493-1504 (2009), http://hdl.handle.net/10261/95479).
description: [EN] This is the experimental data used in the paper of reference (Transactions of the ASABE, 52(5), 1493-1504 (2009), http://hdl.handle.net/10261/95479).
DOI: 10.5203/lwbin.irrb.2011.1
title: Devils Lake - Red River Basin Fish Parasite and Pathogen Project
DOI: 10.25606/surf.578c6039-0a742b3b
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-108)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 108 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-462257aa
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-160)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 160 of the 2048³ resolution collection.
DOI: 10.25606/surf.578c6039-507f8183
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (512-044)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 044 of the 512³ resolution collection.