cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21623148.v5
title: Spatial genomics datasets

description: Spatial genomics datasets used in the spaVAE study.<br>ReamME.txt: detailed descriptions of datasets<br>Human_DLPFC.zip: LIBD human dorsolateral prefrontal cortex (DLPFC) data<br>151673_151674_151675_151676_samples_union.h5: combined four samples of human DLPFC data, which is used for batch integrating experiment.<br>Mouse_hippocampus_Slide_seq_v2.h5: mouse hippocampus Slide-seq V2 data<br>Mouse_olfactory_bulb_data.zip: mouse olfactory bulb data<br>HER2_breast_tumor_data.zip: HER2 breast tumor data<br>mouse_brain_10X_dataset.zip: 10X dataset of anterior and posterior of mouse brain<br>MISAR_seq_mouse_E15_brain_data.zip: MISAR-seq mouse E15.5 brain spatial mRNA-seq and spatial ATAC-seq<br>Spatial_CITE_seq_human_tonsil.zip: human tonsil spatial-CITE-seq multiomics data<br>Spatial_DBiT_seq_mouse_embryo.zip: mouse embryonic brain DBiT-seq multiomics data<br>
DOI: 10.17632/5kg453tsjw
title: Malayalam words

description: The corpus contains 10 words in Malayalam corresponding to 10 digits (0-9) in English. These words are uttered by 10 speakers include 6 females and 4 males of age ranging from 15 to 40. Every speaker gives 10 trials of each word and thus have 100 samples per speaker. Signals are recorded with a sampling frequency of 8 KHz.
DOI: 10.17632/9pr3272xjb
title: Replication Data for: The Financial Impact of State Tax Regimes on Local Economies in the U.S.

description: Replication Data for: The Financial Impact of State Tax Regimes on Local Economies in the U.S.
DOI: 10.17632/s6d9rcdtb2
title: Impact of glucagon-like peptide-1 receptor agonists on cutaneous events: A systematic review and meta-analysis

description: Supplemental Figure and Tables
DOI: 10.6084/m9.figshare.21770639.v1
title: Oregon Health Education Survey 2021.xlsx

description: The 64-item survey was constructed based on the questionnaire from the School Health Profiles Studies (CDC, 2022), School Health Policy and Practices Study (CDC, 2017), and a study of Ohio’s health education teachers (Raffle et al., 2019). Middle and high school teachers (n=253, 24.4%) assigned to teach at least one course of health education from a database of active Oregon health education teacher email addresses (N=1,036) responded to an emailed invitation to complete the online survey. This study was approved by the Wright State University Institutional Review Board for Exempt Research.
DOI: 10.6084/m9.figshare.21890775.v1
title: Geoid_UMG3.xyz

description: Geoid anomalies offer crucial information on the internal density structure of the Earth, and thus, on its constitution and dynamic state. In order to interpret geoid undulations in terms of depth, magnitude and lateral extension of density anomalies in the lithosphere and upper mantle, the effects of lower mantle density anomalies need to be removed from the full geoid (thus obtaining a residual signal known as the 'upper mantle geoid'). However, how to achieve this seemingly simple filtering exercise has eluded consensus for decades in the solid Earth community. While there is wide agreement regarding the causative masses of degrees &gt; 10 in spherical harmonic expansions of the upper mantle geoid, those contributing to degrees &lt; 7-8 remain ambiguous. Here we use spherical harmonic analysis and recent tomography and density models from joint seismic-geodynamic inversions to derive a representative upper mantle geoid, including the contributions from low harmonic degrees. We show that the upper mantle geoid contains important contributions from degrees 5 and 6 and interpret the causative masses as arising from the coupling between the long-wavelength lithospheric structure and the sublithospheric upper mantle convection pattern, including subducted slabs. Importantly, the contributions from degrees 3 &lt; l &lt; 8 do not show a simple power-law behaviour (e.g. Kaula's rule), which precludes the use of standard filtering techniques in the spectral domain. Our model of the upper mantle geoid will be useful in a wide range of geodynamic and geophysical applications, including the study of i) the thermochemical structure of the lithosphere, ii) dynamic topography and mantle viscosity, iii) the nature of the mechanical coupling of the lithosphere-asthenosphere system and iv) the global state of stress within the lithosphere and its associated hazards.
DOI: 10.6084/m9.figshare.23068370.v1
title: A probabilistic approach to estimating timber harvest location

description: Code and data for the paper "A probabilistic approach to estimating timber harvest location". The data consists of 87 trees from 7 oak species in the USA. The code implements a Bayesian model for estimating timber harvest location using Gaussian Process regression.
DOI: 10.6084/m9.figshare.28121423.v1
title: Wolden Emmett County, Iowa Plant project

description: From 1917 to 1951(?) B.O. Wolden collected plants through out Emmett County, especially around High Lake. These plants were stored (but uncatalogued) at the Ada Hayden herbarium, but are now stored (and cataloged) in the Iowa Lakeside Laboratory Herbarium (ILH) and are listed in the attached excel sheet. He also produced a map of where he collected the specimens, which is the purpose of this documentation.
DOI: 10.17632/gjxw9csnxj
title: Data to: Molybdenum and titanium isotopic signatures of arc-derived cumulates

description: We investigated Mo and Ti isotopic signatures of upper crustal magmatic cumulates comprising hornblendites and gabbros from the Alpine orogen, the Sierra Nevada batholith, the Sanandaj-Sirjan zone and the Kos volcano-plutonic system. Along with the isotope data, also bulk rock major and trace elements as well as in-situ microprobe data of individual minerals were measured.
The cumulates and mafic enclaves exhibit Ti isotopic compositions ranging from that of arc-basalts/andesites to significantly lighter values (δ49Ti between −0.15 and + 0.08‰), which is in agreement with a Rayleigh distillation model. The δ49Ti correlates negatively with the abundance of Fe-Ti oxides, suggesting that in samples which have δ49Ti signatures similar to those of arc-basalts, most of the Ti is hosted in pyroxene and amphibole. This indicates that the degree to which Ti isotopes are fractionated in a melt is controlled by the fraction of Ti incorporated into silicate phases versus that incorporated into Fe-Ti oxides.
In contrast, the corresponding Mo isotopic compositions of the upper crustal magmatic cumulates and mafic enclaves are more dispersed (δ98MoNIST = −0.02 ± 0.22‰, 2 s.d.) and similar to average arc-basalts. However, Mo concentrations throughout several cumulate and mafic enclave bulk rocks measured are too enriched to be explained by pure fractional crystallization as they do not match modelled melt-cumulate fractionation trends. We distinguish between purely magmatic and predominantly fluid mediated processes leading to Mo enrichment in cumulates, and show that both can play an important role in the generation of high Mo cumulates.
Further information can be found in the open access publication, which should be cited when using the data: 
Storck, J. C., Greber, N. D., Duarte, J. F. V., Lanari, P., Tiepolo, M., & Pettke, T. (2023). Molybdenum and titanium isotopic signatures of arc-derived cumulates. Chemical Geology, 617, 121260.
DOI: 10.6084/m9.figshare.13323071.v4
title: East Asian summer monsoon evolution recorded by the middle Miocene pelagic reddish clay, South China Sea

description: This page contains original data of our study conducted to theEast Asian summer monsoon evolution using mineralogical and stratigraphic data of the pelagic reddish clay recovred at IODP Site U1433 in the central South China Sea.<br>
DOI: 10.6084/m9.figshare.24435481.v1
title: NatCommun_TNSS_2023.zip

description: The data deposited here are grouped into the following categories.ARPES data: photoemission intensity maps collected at SSRL beamline 5 and ALS beamline 7. Used to generate figures 3, S4, S6XRD data: synchrotron x-ray diffraction data collected at CHEXS beamline 4. Used to generate figures 2, 4, S2, S3DFT data: first principles calculation data. Used to generate figures 2, 3, S7ED data: exact diagonalization and mean-field calculation data. Used to generate figures 4, S8, S9Other characterizations: resistivity as measured from 4-probe methods in a PPMS (Quantum Design), EDX for composition characterization. Used to generate figures 1, S1, S5
DOI: 10.6084/m9.figshare.25697433.v1
title: TCGA Breast Cancer data

description: Heterogeneity of breast cancer poses several challenges for detection and treatment. With next-generation sequencing, we can now map the transcriptional profile of each patient’s breast tissue, which has the potential for identifying and characterizing cancer subtypes. However, the large dimensionality of this transcriptomic data and the heterogeneity between the molecular profiles of breast cancers poses a barrier to identifying minimal markers and mechanistic consequences. In this study, we develop an autoencoder to identify a reduced set of gene markers that characterize the four major breast cancer subtypes with high accuracy. The reduced feature space created by our model captures the functional characteristics of each breast cancer subtype highlighting mechanisms that are unique to each subtype as well as those that are shared. Our high prediction accuracy shows that our markers can be valuable for breast cancer subtype detection. Additionally, they have the potential to provide insights into mechanisms associated with each subtype.
DOI: 10.6084/m9.figshare.28045856.v1
title: vOTU sequences for fram strait virus manuscript, Calayag et al.

description: vOTU sequences for fram strait virus manuscript, Calayag et al.
DOI: 10.6084/m9.figshare.22004057.v1
title: Calpeptin may reverse glucocorticoid-resistance of allergic rhinitis associated with cigarette smoke exposure by down-regulating interferon regulatory factor 1

description: In nasal mucosa samples collected from control patients and those with AR and smoking complicated with AR (Smoke+AR), eosinophils were counted. Serum levels of cytokines interleukin (IL)-4, IL-5, and tumor necrotic factor (TNF)-α were also measured. In addition, 25 rats were divided into the following groups (five rats per group): control, AR, Smoke+AR, AR treated with dexamethasone (DEX+AR), and smoke-exposed AR treated with dexamethasone (DEX+Smoke+AR). Allergic inflammatory reactions, changes in Type II T helper cells (Th2) /Type II intrinsic lymphocyte (ILC2), and expression of the glucocorticoid receptor (GR)-related proteins were detected. Furthermore, 25 rats were divided into the following groups (five rats per group): control, AR, Smoke+AR, DEX+Smoke+AR, and calpeptin-treated cigarette smoke-exposed AR (CP+Smoke+AR). The effect of calpeptin on allergic inflammatory reactions, changes in Th2/ILC2 cells and expression of the GR-related proteins in AR rats exposed to cigarette smoke was evaluated. RPMI-2650 cells were divided into four groups: control, cigarette smoke extract (CSE), CSE+DEX, and CSE+CP. Glucocorticoid sensitivity was evaluated based on IL-8 levels induced by TNF-a. The effect of calpeptin on IL-8 levels and expression of GR-related proteins was evaluated.
DOI: 10.6084/m9.figshare.22714972.v1
title: Foliar functional and genetic variation in a keystone Hawaiian tree species estimated through spectroscopy

description: Leaf spectra of Metrosideros polymorpha genotypes grown in a greenhouse. <br> The first number in the file name is the plant number, and the last is the leaf number. The letter represents the genotype: {G: glaberrima, I: incana from Hawaii Island, OI: incana from Oahu, N: newellii, P: polymorpha}. Two letters represent a hybrid between two varieites. The chems folder includes leaf chemistry data estimated from leaf spectra.
DOI: 10.6084/m9.figshare.27968547.v2
title: <b>An analysis on understanding entrepreneurial networking behavior among Indian startups</b>

description: <b>An analysis on understanding entrepreneurial networking behavior among Indian startups</b>
DOI: 10.6084/m9.figshare.4704529.v1
title: Zebrafish Developmental Stages RNA-seq count data

description: Count data generated RNA-seq from zebrafish embryos from 18 developmental stages from 1-cell to 5 dpf (White et al. 2017)
DOI: 10.6084/m9.figshare.7504748.v1
title: Metabolite BridgeDb ID Mapping Database (20181224)

description: BridgeDb ID mapping database for metabolites, using HMDB 4.0 (Release of 29-09-2018), ChEBI 170 (Release of 03 Dec. 2018), and Wikidata (24 Dec. 2018) as data sources.<br>Several updated mappings, with additional test to eliminate double mappings in WikiPathways (from Wikidata to any other type of included database) and additional test cases in the test pathway from WikiPathways (https://www.wikipathways.org/index.php/Pathway:WP2582).<br><i>This work was funded by ELIXIR, the research infrastructure for life-science data.</i>
DOI: 10.17632/zhbcc7c32x
title: ILC
DOI: 10.6084/m9.figshare.19956284.v3
title: ssssdsss

description: sssss
DOI: 10.17632/jj3tw8kj6h
title: Driving Behavior Dataset

description: Dataset for modeling risky driver behaviors based on accelerometer (X,Y,Z axis in meters per second squared (m/s2)) and gyroscope (X,Y, Z axis in degrees per second (°/s) ) data. 
Sampling Rate: Average 2 samples (rows) per second
Cars: Ford Fiesta 1.4,  Ford Fiesta 1.25, Hyundai i20
Drivers: 3 different drivers with the ages of 27, 28 and 37
Driver Behaviors: Sudden Acceleration (Class Label: 1), Sudden Right Turn (Class Label: 2), Sudden Left Turn (Class Label: 3), Sudden Break (Class Label: 4)
Best Window Size: 14 seconds
Sensor: MPU6050
Device: Raspberry Pi 3 Model B
Please See Summary Table for summary of the collected data.
DOI: 10.6084/m9.figshare.25423291.v1
title: <b>Supporting Information for the paper: </b>Detection of functional diversity patterns and their geoclimatic filters is sensitive to data types (occurrence vs. abundance) and spatial scales (sites vs. regions)

description: This repository contains spreadsheets with the references used to compile trait and species composition data (occurrence and abundance) of the Atlantic Forest woody flora in South America, among other information.Description of files:(1) "references-composition-compilation.xlsx": This file contains information about the studies used to compile species composition data (occurrence and abundance) used in the main analyses, among other information.(2) "references_trait_compilation.xlsx": This file contains the references used to compile data from the seven target traits, used in the main analyses, and three additional traits, used exclusively in the trait data cleaning process, among other information.(3) "trait-coverage.xlsx": This file contains information about local trait coverages and relative species richness per site in the occurrence and abundance datasets, among other information.
DOI: 10.6084/m9.figshare.28908986.v1
title: Experimental data from the study "<b>Native plant diversity provides resistance to invasion by an alien species in natural and experimental settings</b>".

description: This file contains the experimental data and associated R code related to the study "Native plant diversity provides resistance to invasion by an alien species in natural and experimental settings".
DOI: 10.6084/m9.figshare.c.3796345_d13.v1
title: DD2 DD5 ablations_2 feature files and segmented movies

description: Processed videos of mock-, DD2, and DD5-ablated animals (with segmentation) freely-moving on a bacterial lawn for 15 minutes, and Matlab files containing data for features extracted from these videos, for replicate 2 of the DD2/DD5-ablation experiment.
DOI: 10.17632/gbffmp247n
title: ca and mg isotopic ratios for late Cenozoic carbonates, SCS

description: Data include the isotope (δ13C, δ18O, δ44/40Ca, δ26Mg) and element (Mg/Ca, Mg/(Mg+Ca), Sr/Ca, Mn/Sr) values from the South China Sea.
DOI: 10.17632/ztw2z2p28h
title: Smart Citizen PM Board

description: The PM Sensor Board is an auxiliary board capable of driving a wide variety of connections. It is mainly intended to serve as an I2C bridge between the Data Board and several types of sensors, as well as to provide an off-the-shelf connection to the Plantower PMS5003 sensors supporting JST-XH connectors. The board runs a dedicated ARM M0+ 32-bits, the same as to the Data Board to provide a unified hardware architecture. The board includes a step up to provide 5V to drive the PM sensors and a disable/enable circuit to turn off the sensor by software. Finally, this board includes a standard set of Grove Connectors, including I2C bridge, 12bit ADC, GPIO and UART interfaces, for auxiliary sensors such as external temperature probes or anemometers. This work is led by IAAC Fab Lab Barcelona team under the framework of iSCAPE (Improving Smart Control of Air Pollution in Europe) project, which is funded by the European Community’s H2020 Programme (H2020-SC5-04-2015) under the Grant Agreement No. 689954. All the authors acknowledge the funding received via the iSCAPE project.
DOI: 10.6084/m9.figshare.1367249.v1
title: INFLUENCE OF EXOGENOUSLY APPLIED PLANT GROWTH REGULATORS ON PHOTOSYNTHETIC PIGMENTS OF AMARANTHUS GANGETICUS L. UNDER SALT STRESS.

description: The exogenous applications of plant growth regulators like Putrescine, yAminobutyric Acid (GABA), salicylic acid (SA) and Biotonic formulation under the NaCl salinity stress (50, 100 mM) on the Photosynthetic Pigment content of A. gangaticus were studied. It reveals that foliar sprays of these growth regulators increases the photosynthetic pigments as compared to the untreated plant. The applications of SA and Putrescine exhibits significant increase in the chlorophyll and carotenoid content at lower levels of salinity (50mM) doses. This will help to improve the photosynthetic efficiency under saline conditions.
DOI: 10.6084/m9.figshare.28645892.v3
title: <b>Dental Students’ Attitude toward General Surgery Subject</b>

description: To determine the influence of general surgery subject on oral surgery subject and Student’s preference toward the specialty of the lecturer
DOI: 10.6084/m9.figshare.4309487.v1
title: DFT study of the thermodynamics of the reactions between thymidine or xylose-derived cyclic carbonates and methanol or iso-propanol

description: Data to support article:<br><br>CO<sub>2</sub>-driven stereochemical inversion of sugars to create thymidine-based polycarbonates by ring-opening polymerisation<br><br>DOI: 10.6084/m9.figshare.4309487<br><br><br>Authors:<br><br> Georgina L. Gregory,<sup>a</sup> Elizabeth M. Hierons,<sup>a</sup> Gabriele Kociok-Köhn,<sup>a</sup> Ram Sharma<sup>b</sup> and Antoine Buchard<sup>a,</sup>* <sup>a</sup> Department of Chemistry, University of Bath, Bath BA2 7AY <sup>b</sup> Department of Chemical Engineering, University of Bath, Bath BA2 7AY <br>DFT study: - DFT optimised geometries and computed free enthalpies were used to calculate the thermodynamics of the ring-opening of N-methylthymidine cyclic carbonates trans-<b>1</b> or cis-<b>1</b>, or N-benzoylthymidine cyclic carbonate cis-<b>1-</b>Bz, or ᴅ-xylose-based cyclic carbonate IPXTC <b><sub> </sub></b>(from Shen et al., Macromolecules 1999, 32, 2799 - 280), by methanol or iso-propanol, to evaluate the thermodynamics of ROP and the regioselectivity of the reactions. <b><sub><br><br></sub></b> Protocol: <br>rwB97XD/6-311+G(2d,p)/cpcm=dichloromethane/T=298.15K Content: - Gaussian09 rev D.01 output files- Thermodynamics_ROP.pdf, illustrating the calculations made and summarising the enthalpies computed.
DOI: 10.6084/m9.figshare.5425693.v1
title: Recovery format: RPE, BP, PACES

description: Ratings of perceived exertion, blood pressure and enjoyment data from twelve sedentary men performing a session of HIIIT with passive (HIITPASS) or active (HIITACT) recovery periods and a session of light intensity interval exercise (REC).
DOI: 10.17632/h7wk6bk86h
title: Genomic Association Of A Potassium Channel To Chronic Idiopathic Anhidrosis In Stock-Type Horses
DOI: 10.17632/r3ypmmp2gs
title: AFHIRIS: African Human Iris Dataset (Version 1)

description: This dataset present a unique collection of iris imaes of African descent. It is the first publicly available human iris datasets of African descents. Three categories of images were collected from 1028 volunteers that participated in the data collection task. The first category is made up of four iris images that were captured when the volunteers used spectacles while the second category includes four sets of iris images captured when the volunteers are without spectacles. The third category is iris images obtained from volunteers that used lenses.
DOI: 10.6084/m9.figshare.18666410.v1
title: CP Curriculum Raw data updated in Excel and PDF

description: CP Curriculum PAHS research Raw data
DOI: 10.6084/m9.figshare.25139468.v1
title: 3.annotation.zip

description: Genome annotation for <i>N.sylvestris</i>
DOI: 10.6084/m9.figshare.7546622.v1
title: Taxonomic classification

description: Taxonomic classification
DOI: 10.6084/m9.figshare.7677479.v1
title: Aicardi syndrome: a case report

description: Abstract Introduction: the Aicardi syndrome (SA) is characterized as a rare syndrome identified in the presence of three classic characteristics: corpus callosum agenesis, chorioretinal lacunaeand infantile spasms. Description: data collection involved information reported by the mother and the accompanying physiotherapist describing the patient's clinical history andmajor complications according to clinical evolution, treatment, and therapeutic response. At two months of age, the child presented a delayed neuropsychomotor development and infantile spasms.However,the diagnosis of the syndrome was only performed at six months of life, involving brain magnetic resonance imaging where corneal body agenesis was observed. A multidisciplinary treatment was assembledwith a neuropediatrician, a physiotherapist, a psychologist, a nutritionistand a speech therapist, besides drug treatment with baclofen and phenobarbital. Discussion: through the established treatment, the child displayedmotor gain, cervical control, improvement of the respiratory condition, and no need forhospital admissions;these outcomescharacterizea good clinical evolution associated with the physiotherapeutic intervention focused on prevention and minimization of respiratory alterationsthatare frequently associated with morbidity and mortality in these cases. The results obtained point out the fundamental role of multidisciplinary intervention in coping with this condition.
DOI: 10.25387/g3.6133946.v1
title: Supplemental Material for Xu et al., 2018

description: Figure S1. Pairwise allignments of the genome presented in this study; G6_2 compared against a) 949_S8; b) ATCC12228; c) BPH 0662; d) PM221, e) RP62A and e) SEITABLE S1: ASSEMBLY METRICS (GENERATED USING WEB QUAST), ALL STATISTICS ARE BASED ON CONTIGS OF SIZE &gt;= 500 BPTABLE S2: SIMILARITY MATRIX FOR EACH STRAIN IN THIS STUDY, G6 2 AND REFERENCE STRAINS<br>
DOI: 10.6084/m9.figshare.22691185.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.