cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12010737
title: Global cropland-N2O emissions dataset (1901-2014)

description: <b>Global gridded cropland-N2O emissions dataset</b><br> <b>Data Products:</b>1. Global gridded dataset of N2O emissions from upland crops (5-arc-minute, annual) during the period 1901-2014.2. Global gridded dataset of N2O emissions from paddy rice (5-arc-minute, annual) during the period 1901-2014.<br>Note: The datasets were produced by using flux upscaling approach (BRRTv2) by Qihui Wang at Peking University. Detailed informations such as variable names and units can be obtained by using the “ncdisp”function in matlab.<br>Resolution: 5min;Latitude: 90°N~90°SLongitude:-180°W~180°EVariable name: N2O_FI_r; N2O_FI_uDefinition: N2O_FI_r means fertilizer induced N2O emissions by paddy rice and N2O_FI_u means fertilizer induced N2O emissions by upland cropsUnit: kg N per ha per yr; kg N per ha per yrThe “ha” stand for paddy rice area for paddy rice emissions and upland crops area for upland crops emissions.<br> <b>Citation:</b>1. Wang Q, Zhou F, Shang Z, Ciais P, Winiwarter W, Jackson RB<i>, et al.</i> Data-driven estimates of global nitrous oxide emissions from croplands. <i>National Science Review</i> 2020, <b>7</b>(2)<b>:</b> 441-452. https://doi.org/10.1093/nsr/nwz0872. Shang Z, Zhou F, Smith P, Saikawa E, Ciais P, Chang J<i>, et al.</i> Weakened growth of cropland N<sub>2</sub>O emissions in China associated with nationwide policy interventions. <i>Global Change Biology</i> 2019, <b>25</b>(25)<b>:</b> 3706-3719. https://doi.org/10.1111/gcb.147413. Shang Z, Abdalla M, Kuhnert M, Albanito F, Zhou F, Xia L<i>, et al.</i> Measurement of N2O emissions over the whole year is necessary for estimating reliable emission factors. <i>Environ Pollut</i> 2020<b>:</b> https://doi.org/10.1016/j.envpol.2019.1138644. Zhou F, Shang ZY, Zeng ZZ, Piao SL, Ciais P, Raymond PA<i>, et al.</i> New model for capturing the variations of fertilizer-induced emission factors of N2O. <i>Global Biogeochem Cy</i> 2015, <b>29</b>(6)<b>:</b> 885-897. https://doi.org/10.1002/2014GB0050465. Zhou F, Shang ZY, Ciais P, Tao S, Piao SL, Raymond P<i>, et al.</i> A New High-Resolution N2O Emission Inventory for China in 2008. <i>Environ Sci Technol</i> 2014, <b>48</b>(15)<b>:</b> 8538-8547. https://doi.org/10.1021/es5018027<br> <b>Contact:</b>Direct questions, additional information regarding publications and research by email to zhouf@pku.edu.cn. <b><br></b><b>License:</b>Creative Commons Attribution 4.0 InternationalData may be freely downloaded for research, study, or teaching, but must be cited appropriately. Re-release of the data, or incorporation of the data into a commercial product, is allowed only with explicit permission. If you would like to request permission to use this dataset for another purpose, please contact us at zhouf@pku.edu.cn.
DOI: 10.6084/m9.figshare.12010728
title: PM-RGC-part01-08

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010710
title: Additional file 8 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 8: Table 8. Reported epitopes that matched predicted epitopes of HCSS sequences
DOI: 10.6084/m9.figshare.12010716
title: Spatial correlation and temporal evolution of plastic heterogeneity in sheared granular materials

description: Granular materials will yield and undergo serrated plastic flow when subjected to mechanical loading. The microscopic dynamics of serrated plastic flow in granular materials is of great importance for earthquake physics, condensed physics, and material science. It has been found the stress avalanches of granular materials is expected to be related to the spatial concentration and temporal evolution of the microscopic plastic events. Although the research on it is abundant, the mechanism of the initialization and localization of the plastic events within timescale much less than the structural relaxation time is still poorly understood. Limited by the temporal resolution of experimental techniques available, we turn to seek help from the computer simulation, i.e., the combined finite and discrete element method (FDEM). We use FDEM to model the simple shearing of an assembly of irregularly shaped particles and track the particle scale dynamics after the sample reaches steady state. Then we illustrate the initialization, annihilation, and merging of the zones of intense plastic activity over a wide range of timescales (i.e., strain scales). At small strain scales, nonaffine motions originate at particles experiencing large stress fluctuations.The cooperative dynamics and long-ranged dynamic heterogeneity is responsible for the animation and merging of plastic zones at the timescale close to the structural relaxation time, and the plasticity is manifested as structural rearrangement and shear transformation at large enough strain scales. The spatiotemporal variability of plastic activity is confirmed by the transient nature of the high mobile clusters.
DOI: 10.6084/m9.figshare.12010716.v1
title: Spatial correlation and temporal evolution of plastic heterogeneity in sheared granular materials

description: Granular materials will yield and undergo serrated plastic flow when subjected to mechanical loading. The microscopic dynamics of serrated plastic flow in granular materials is of great importance for earthquake physics, condensed physics, and material science. It has been found the stress avalanches of granular materials is expected to be related to the spatial concentration and temporal evolution of the microscopic plastic events. Although the research on it is abundant, the mechanism of the initialization and localization of the plastic events within timescale much less than the structural relaxation time is still poorly understood. Limited by the temporal resolution of experimental techniques available, we turn to seek help from the computer simulation, i.e., the combined finite and discrete element method (FDEM). We use FDEM to model the simple shearing of an assembly of irregularly shaped particles and track the particle scale dynamics after the sample reaches steady state. Then we illustrate the initialization, annihilation, and merging of the zones of intense plastic activity over a wide range of timescales (i.e., strain scales). At small strain scales, nonaffine motions originate at particles experiencing large stress fluctuations.The cooperative dynamics and long-ranged dynamic heterogeneity is responsible for the animation and merging of plastic zones at the timescale close to the structural relaxation time, and the plasticity is manifested as structural rearrangement and shear transformation at large enough strain scales. The spatiotemporal variability of plastic activity is confirmed by the transient nature of the high mobile clusters.
DOI: 10.6084/m9.figshare.12010728.v1
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010707
title: Additional file 7 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 7: Table 7. IEDB reported DENV T cell epitopes/ligands in human that completely matched HCSS sequences
DOI: 10.6084/m9.figshare.12010710.v1
title: Additional file 8 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 8: Table 8. Reported epitopes that matched predicted epitopes of HCSS sequences
DOI: 10.6084/m9.figshare.12010728.v2
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010704
title: Additional file 6 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 6: Table 6. HLA-A, -B and -DR supertype-restricted T-cell epitopes, predicted for HCSS nonamers, summarised according to DENV protein and serotypes
DOI: 10.6084/m9.figshare.12010707.v1
title: Additional file 7 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 7: Table 7. IEDB reported DENV T cell epitopes/ligands in human that completely matched HCSS sequences
DOI: 10.6084/m9.figshare.12010701
title: Additional file 5 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 5: Table 5. Functional analysis of the highly conserved, serotype specific (HCSS) sequences by use of Pfam (supporting ID in column F) and the Conserved Domains Database (CDD; supporting ID in column E). Sequences without reported functional correlations are denoted with '-'. Sequences with two different functional domains and motifs from Pfam and CDD are denoted with * and #, respectively (column D).
DOI: 10.6084/m9.figshare.12010704.v1
title: Additional file 6 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 6: Table 6. HLA-A, -B and -DR supertype-restricted T-cell epitopes, predicted for HCSS nonamers, summarised according to DENV protein and serotypes
DOI: 10.6084/m9.figshare.12010698
title: Additional file 4 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 4: Table 4. Nonamer positions depicting amino acid differences between an HCSS nonamer and the corresponding variants, within and between the serotypes. Only positions of mutual information value of 1 and low entropy values are shown. HCSS nonamers are shown in yellow, and one is arbitrarily chosen as the reference when more than one corresponding HCSS nonamers are present. A) The variant amino acids are not shown, instead the number of such variants and the number of amino acid differences are indicated. B) All the variants and the amino acid differences are shown.
DOI: 10.6084/m9.figshare.12010701.v1
title: Additional file 5 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 5: Table 5. Functional analysis of the highly conserved, serotype specific (HCSS) sequences by use of Pfam (supporting ID in column F) and the Conserved Domains Database (CDD; supporting ID in column E). Sequences without reported functional correlations are denoted with '-'. Sequences with two different functional domains and motifs from Pfam and CDD are denoted with * and #, respectively (column D).
DOI: 10.6084/m9.figshare.12010695
title: Additional file 3 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 3: Table 3. Highly conserved, serotype-specific (HCSS) sequences that corresponded across the four serotypes
DOI: 10.6084/m9.figshare.12010698.v1
title: Additional file 4 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 4: Table 4. Nonamer positions depicting amino acid differences between an HCSS nonamer and the corresponding variants, within and between the serotypes. Only positions of mutual information value of 1 and low entropy values are shown. HCSS nonamers are shown in yellow, and one is arbitrarily chosen as the reference when more than one corresponding HCSS nonamers are present. A) The variant amino acids are not shown, instead the number of such variants and the number of amino acid differences are indicated. B) All the variants and the amino acid differences are shown.
DOI: 10.6084/m9.figshare.12010728.v3
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010692
title: Additional file 2 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 2: Table 2. Highly conserved, serotype-specific (HCSS) sequences
DOI: 10.6084/m9.figshare.12010695.v1
title: Additional file 3 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 3: Table 3. Highly conserved, serotype-specific (HCSS) sequences that corresponded across the four serotypes
DOI: 10.6084/m9.figshare.12010689
title: Additional file 1 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 1: Table 1. Comparison of intra- and inter-serotype entropy values between the 2005 (Khan et al., 2008) and 2018 datasets (this study).
DOI: 10.6084/m9.figshare.12010689.v1
title: Additional file 1 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 1: Table 1. Comparison of intra- and inter-serotype entropy values between the 2005 (Khan et al., 2008) and 2018 datasets (this study).
DOI: 10.6084/m9.figshare.12010728.v4
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010692.v1
title: Additional file 2 of Identification of highly conserved, serotype-specific dengue virus sequences: implications for vaccine design

description: Additional file 2: Table 2. Highly conserved, serotype-specific (HCSS) sequences
DOI: 10.6084/m9.figshare.12010728.v5
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010728.v6
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010728.v7
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010728.v8
title: PM-RGC-01

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010728.v10
title: PM-RGC-part01-08

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010653
title: Additional file 5 of Effect of contact with podiatry in a team approach context on diabetic foot ulcer and lower extremity amputation: systematic review and meta-analysis

description: Additional file 5. Characteristics of included studies for meta-analysis – Contact with podiatrist in MDT context.
DOI: 10.6084/m9.figshare.12010653.v1
title: Additional file 5 of Effect of contact with podiatry in a team approach context on diabetic foot ulcer and lower extremity amputation: systematic review and meta-analysis

description: Additional file 5. Characteristics of included studies for meta-analysis – Contact with podiatrist in MDT context.
DOI: 10.6084/m9.figshare.12010728.v9
title: PM-RGC-01-08

description: <b>Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics</b>
DOI: 10.6084/m9.figshare.12010629
title: Additional file 1 of MTHFR, XRCC1 and OGG1 genetic polymorphisms in breast cancer: a case-control study in a population from North Sardinia

description: Additional file 1: Table S5 A. Association of MTHFR, XRCC1, OGG1 polymorphisms and ER, PgR, Her-2, Ki67 and Lymph Node status in BC patients. B. Association of MTHFR, XRCC1, OGG1 polymorphisms and Age at diagnosis, BMI, Menopause, BC family history status in BC patients.
DOI: 10.6084/m9.figshare.12010629.v1
title: Additional file 1 of MTHFR, XRCC1 and OGG1 genetic polymorphisms in breast cancer: a case-control study in a population from North Sardinia

description: Additional file 1: Table S5 A. Association of MTHFR, XRCC1, OGG1 polymorphisms and ER, PgR, Her-2, Ki67 and Lymph Node status in BC patients. B. Association of MTHFR, XRCC1, OGG1 polymorphisms and Age at diagnosis, BMI, Menopause, BC family history status in BC patients.
DOI: 10.6084/m9.figshare.12010572
title: Additional file 1 of Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice

description: Additional file 1: Supplementary Table 1. Gene cluster-assignment comparison. Complete list of gene cluster-assignments using Recursive Indirect-Paths Modularity (RIP-M), Weighted Gene Co-Expression Network Analysis (WGCNA), and Weighted Gene Co-Expression Network Analysis with Modularity Maximization (WGCNA-M).
DOI: 10.6084/m9.figshare.12010572.v1
title: Additional file 1 of Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice

description: Additional file 1: Supplementary Table 1. Gene cluster-assignment comparison. Complete list of gene cluster-assignments using Recursive Indirect-Paths Modularity (RIP-M), Weighted Gene Co-Expression Network Analysis (WGCNA), and Weighted Gene Co-Expression Network Analysis with Modularity Maximization (WGCNA-M).
DOI: 10.6084/m9.figshare.12010518
title: Additional file 1 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 1: Excel file: Supplementary tables S1–S6 for additional results.
DOI: 10.6084/m9.figshare.12010521
title: Additional file 2 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 2: R Script: Wilcoxon signed-rank test for independent test set evaluation.
DOI: 10.6084/m9.figshare.12010521.v1
title: Additional file 2 of MS2CNN: predicting MS/MS spectrum based on protein sequence using deep convolutional neural networks

description: Additional file 2: R Script: Wilcoxon signed-rank test for independent test set evaluation.
DOI: 10.15468/b9t6uq
title: Taxonomic revision of the Neotropical genus Ormiophasia Townsend, 1919 (Diptera: Tachinidae), with the description of eight new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gudin, Filipe M., Nihei, Silvio S. (2019): Taxonomic revision of the Neotropical genus Ormiophasia Townsend, 1919 (Diptera: Tachinidae), with the description of eight new species. Zootaxa 4643 (1): 1-74, DOI: https://doi.org/10.11646/zootaxa.4643.1.1
DOI: 10.6084/m9.figshare.12010314
title: Additional file 9 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 9: Supplementary Table 5. Primer sequences used in qPCR.
DOI: 10.6084/m9.figshare.12010314.v1
title: Additional file 9 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 9: Supplementary Table 5. Primer sequences used in qPCR.
DOI: 10.6084/m9.figshare.12010305
title: Additional file 8 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 8: Supplementary Table 4. Details of the human brain samples used. Patient information and lesion type are provided. PMD: Post-mortem delay; CA: chronic active; CIA: chronic inactive.
DOI: 10.6084/m9.figshare.12010305.v1
title: Additional file 8 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 8: Supplementary Table 4. Details of the human brain samples used. Patient information and lesion type are provided. PMD: Post-mortem delay; CA: chronic active; CIA: chronic inactive.
DOI: 10.6084/m9.figshare.12010299
title: Additional file 7 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 7: Supplementary Table 3. Details of the human CSF samples used. Patient information is provided, together with an indication of the experiment(s) for which the samples were used. NINDC: non-inflammatory disease controls; SC: symptomatic controls; INDC: inflammatory CNS disease.
DOI: 10.6084/m9.figshare.12010293
title: Additional file 6 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 6: Supplementary Table 2. Details of the human choroid plexus samples used for explants culture. F: female, M: male; PMD: Post-mortem delay.
DOI: 10.6084/m9.figshare.12010293.v1
title: Additional file 6 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 6: Supplementary Table 2. Details of the human choroid plexus samples used for explants culture. F: female, M: male; PMD: Post-mortem delay.
DOI: 10.6084/m9.figshare.12010299.v1
title: Additional file 7 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 7: Supplementary Table 3. Details of the human CSF samples used. Patient information is provided, together with an indication of the experiment(s) for which the samples were used. NINDC: non-inflammatory disease controls; SC: symptomatic controls; INDC: inflammatory CNS disease.
DOI: 10.6084/m9.figshare.12010287
title: Additional file 5 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 5: Supplementary Table 1. Details of the human choroid plexus samples used for RNA-seq. F: female, M: male; PMD: Post-mortem delay; RIN: RNA integrity number; SP: Secondary Progressive; PP: Primary Progressive. The type of MS is noted in between brackets, as extracted from the clinical report, sometimes unclear
DOI: 10.6084/m9.figshare.12010287.v1
title: Additional file 5 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 5: Supplementary Table 1. Details of the human choroid plexus samples used for RNA-seq. F: female, M: male; PMD: Post-mortem delay; RIN: RNA integrity number; SP: Secondary Progressive; PP: Primary Progressive. The type of MS is noted in between brackets, as extracted from the clinical report, sometimes unclear
DOI: 10.6084/m9.figshare.12010263
title: Additional file 11 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 11: Supplementary Table 7. Results from the gene expression analysis in CP explants in normoxia and hypoxia. Table displays the p-values of the difference in expression between the CP explants in normoxia or hypoxia, assessed by paired two-tailed Welch t-test
DOI: 10.6084/m9.figshare.12010257
title: Additional file 10 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 10: Supplementary Table 6. Gene ontology enrichment analysis. Table displays the GO category ID, the name of the term, the number of differentially expressed (DE) genes in the category and the total number of genes in the category.
DOI: 10.6084/m9.figshare.12010263.v1
title: Additional file 11 of Altered secretory and neuroprotective function of the choroid plexus in progressive multiple sclerosis

description: Additional file 11: Supplementary Table 7. Results from the gene expression analysis in CP explants in normoxia and hypoxia. Table displays the p-values of the difference in expression between the CP explants in normoxia or hypoxia, assessed by paired two-tailed Welch t-test