cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eqcgr2
title: Occurrence Download

description: A dataset containing 2425 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pontoscolex corethrurus (Muller, 1856)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2425 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000664-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14638445
title: Two Alchemical Dictionaries in TEI-XML

description: Martin Ruland’s Lexicon Alchemiae, in its 1612 edition, and Sommerhoff’s German-Latin dictionary (1701) in TEI-XML format provide valuable resources for understanding the cryptic language of alchemy, characterized by its use of codenames, or Decknamen. Alchemical terminology, often allegorical and poetic, arose as a shared vocabulary for laboratory practices before the advent of modern analytical chemistry. Lacking precise measurements, chymists relied on these terms to describe sensory experiences and chemical processes, forming a language that, while obscure to outsiders, enabled communication within their community. Together, the two dictionaries contain some 20.000 entries in Latin and German.
DOI: 10.5281/zenodo.14638444
title: Two Alchemical Dictionaries in TEI-XML

description: Martin Ruland’s Lexicon Alchemiae, in its 1612 edition, and Sommerhoff’s German-Latin dictionary (1701) in TEI-XML format provide valuable resources for understanding the cryptic language of alchemy, characterized by its use of codenames, or Decknamen. Alchemical terminology, often allegorical and poetic, arose as a shared vocabulary for laboratory practices before the advent of modern analytical chemistry. Lacking precise measurements, chymists relied on these terms to describe sensory experiences and chemical processes, forming a language that, while obscure to outsiders, enabled communication within their community. Together, the two dictionaries contain some 20.000 entries in Latin and German.
DOI: 10.17632/3zvv8b52pj.1
title: BMC Bioinformatics 2005-2015 Dataset

description: The BMC Bioinformatics 2005-2015 dataset is a collection of research articles published in the BMC Bioinformatics journal between the years 2005 and 2015. The dataset primarily consists of text files containing full-length articles, abstracts, or sections of papers related to bioinformatics research.

Dataset Structure:
The dataset is stored in a hierarchical folder structure, where each subfolder corresponds to a specific year or category of publications.
Each subfolder contains multiple .txt files, representing different research articles.
Key Features:
Time Period: Covers research published between 2005 and 2015.
Domain-Specific Content: Focuses on bioinformatics, including computational biology, genomics, and data analysis techniques.
Preprocessed Text Files: The dataset consists of extracted textual content from articles, making it suitable for natural language processing (NLP) and topic modeling.
Diverse Research Topics: Includes topics such as sequence analysis, machine learning in bioinformatics, systems biology, and computational genomics.
 This dataset is valuable for bioinformatics researchers, data scientists, and machine learning practitioners interested in text-based analysis of scientific literature.
DOI: 10.25921/gsef-pg81
title: Visible Infrared Imaging Radiometer Suite (VIIRS) Global Area Coverage (VGAC), Version 1
DOI: 10.15468/dl.tfuj92
title: Occurrence Download

description: A dataset containing 3200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ambrosia artemisiifolia L.",
 "Country is Russian Federation",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 3200 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000665-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3y7ts5
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercyon curi Clarkson, Mise & Almeida, 2020",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000666-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t4ecc4
title: Occurrence Download

description: A dataset containing 3743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Anaxyrus microscaphus (Cope, 1867))"
 ]
}

 The dataset includes 3743 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000667-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25810/0j9m-4y38
title: Data/Software supplement for “Processes that influence bottom temperatures in the California Current System” JGR–Oceans (in press) 2025
DOI: 10.6073/pasta/01ee4d2142e02f8e3135ee231a01ad7d
title: Skin-blubber biopsy samples and associated demographic data collected from cetaceans encountered along the Western Antarctic Peninsula (WAP), 2010 – 2024

description: Baleen whale populations in the Southern Ocean are recovering after intense commercial whaling in the 20th century. Along the Western Antarctic Peninsula (WAP), this recovery is occurring in one of the planet's most rapidly changing marine ecosystems. Understanding how climate-driven changes influence the population dynamics of whales in this region is critical for understanding what conservation and management actions must be prioritized to maintain the structure and function of this marine ecosystem. To begin understanding the dynamics of whale recovery under continued environmental change, we need to study these whales' demography and population dynamics. As part of our annual sampling surveys for cetaceans along the WAP through the PAL LTER program, we actively collect remote non-lethal skin-blubber biopsy samples and have developed one of the most extensive tissue archives in the Southern Ocean. With these samples, we conduct a series of demographic and physiological measurements. Using the skin portion of the biopsy sample, we isolate nuclear and mitochondrial DNA (mtDNA) to develop a DNA profile for each sample, including genetic sex, a microsatellite genotype, and a mtDNA haplotype. These profiles are used to compare sex ratios of the population, determine individual recaptures through genotype analysis, and better understand population mixing. Using the blubber portion of the biopsy sample, we isolate endocrine markers (e.g., progesterone and cortisol) to monitor population pregnancy rates and stress levels. This data represents some of the first non-lethal quantitative observations of the demography and population dynamics of recovering whale populations in the Antarctic and provides a critical reference point for future work as the Antarctic climate continues to change and populations continue to recover from whaling.
DOI: 10.15468/dl.jhtxvd
title: Occurrence Download

description: A dataset containing 681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercyon nigriceps (Marsham, 1802)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 681 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000668-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vxzm9
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "OccurrenceStatus is Present",
 "TaxonKey is Trichomanes pellucens Kunze"
 ]
}

 The dataset includes 49 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000669-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/dsbbwsxvyv.1
title: Compassionate Learning in Madrasah

description: This research aims to explain how compassionate learning plays a role in strengthening the anti-bullying character of MI Tarbiyatul Banin Pekalongan Winong students. 
This data is the answer from the Head of MI and Grade 6 Teacher about madrasah policy, as well as Questionnaire of Grade 6 students related to Anti Bullying character.
DOI: 10.15468/dl.cdqq5c
title: Occurrence Download

description: A dataset containing 3743 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Anaxyrus microscaphus (Cope, 1867))"
 ]
}

 The dataset includes 3743 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000671-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/71e29f2940abc2734c7ebc5df6014fdc
title: Palmer Deep Underwater Acoustic Mooring Deployments 2021-2024

description: Marine mammals play a crucial role in the ocean ecosystem, yet monitoring their occurrence, distribution, and abundance poses a challenge in remote areas, such as the Antarctic. Traditionally, human observers have conducted visual surveys to detect marine mammals, relying on the animals' need to surface periodically for air. This method is often costly, requiring a large team of observers and the use of ships or aircraft. Additionally, visual surveys are limited by weather and sighting conditions, such as fog, rain, heavy seas, and darkness. Despite their expense, visual surveys are often inefficient for continuous real-time monitoring of marine mammal presence. However, they remain essential for tasks like photo identification, health assessment, and abundance estimation for many species. In recent decades, passive acoustic recorders have become extremely popular for detecting vocally active marine mammals, as they can operate continuously for periods of months to years. This enables a passive method of observation of marine mammals during periods where visual surveys are untenable. We developed a long term mooring system equipped with an underwater acoustic recorder that is capable of recording at 60% for up to 200 days at a time. Since 2022, we have been maintaining these moorings to provide for annual acoustic coverage, and will continue to under the Palmer LTER. This data can be used to compose the underwater soundscape of the region, and a general assessment of year-round acoustic presence of sound producing animals. Further analysis could examine the impacts of inter- and intra- seasonal environmental conditions (e.g., sea ice advance and retreat, sea ice extent, storminess) on the phenology of acoustic presence in the region.
DOI: 10.5281/zenodo.14873080
title: Dataset for the manuscript "Temperature-Dependent Dynamic Disproportionation in LiNiO2"

description: Data supporting the manuscript "Temperature-Dependent Dynamic Disproportionation in LiNiO2" (currently arXiv:2211.09047). Uploading in progress, currently (2025/02/14) up:



Ligand-field multiplet spectral shapes, under ligand_field_multiplets

VASP calculation results for the density of states, under comp_data_pub (Extended Data Figure 2b)


To be uploaded:



AIMD trajectories

raw XAS and RIXS spectra

python code for making all figures
DOI: 10.5067/5q8jlzl1vd4a
title: OCO-2 Level 2 bias-corrected XCO2 and other select fields from the full-physics retrieval aggregated as daily files, Retrospective processing V11r
DOI: 10.5067/w8qgiynks3jc
title: OCO-2 Level 2 bias-corrected XCO2 and other select fields from the full-physics retrieval aggregated as daily files, Retrospective processing V9r
DOI: 10.15468/dl.fjpev4
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cercyon praetextatus (Say, 1825)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 447 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000672-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.abttth
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Allolobophora parva Eisen, 1874",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 44 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000673-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qnqr8
title: Occurrence Download

description: A dataset listing the 1143 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset's 1143 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000670-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7853jj
title: Occurrence Download

description: A dataset containing 8260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aporrectodea rosea (Savigny, 1826)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 8260 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000674-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28319024
title: SpatialData object of https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Adult_Mouse_Brain

description: https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Adult_Mouse_Brain
DOI: 10.6084/m9.figshare.28319024.v1
title: SpatialData object of https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Adult_Mouse_Brain

description: https://support.10xgenomics.com/spatial-gene-expression/datasets/1.1.0/V1_Adult_Mouse_Brain
DOI: 10.15468/dl.k8g2q5
title: Occurrence Download

description: A dataset containing 7552 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lumbricus rubellus Hoffmeister, 1843",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 7552 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000675-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28422422
title: Baloxavir improves disease outcomes in mice after intranasal or ocular infection with Influenza A virus H5N1-contaminated cow's milk

description: Testing approved antivirals against A(H5N1) influenza viruses circulating in peridomestic species, including dairy cows, is critical to public health and pre-pandemic planning. It cannot be tested in humans due to A(H5N1) disease severity. Here, in mice, we demonstrate that U.S. FDA-approved baloxavir treatment mediates improved disease outcomes (survival and viral dissemination) over oseltamivir after lethal intranasal and ocular challenge with A(H5N1)-contaminated cow milk.
DOI: 10.15468/dl.562nnf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eukerria emete Righi & Guerra, 1985",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000676-250214102907787/datasets/export for details.
DOI: 10.25345/c5j38kw26
title: MassIVE MSV000097122 - The immune NIK1 RPL10 LIMYB signaling module regulates photosynthesis and translation under biotic and abiotic stresses
title: Photosynthesis and translation are targets of metabolic control and development in plants, yet how stress signals coordinately regulate these opposing energy-producing and consuming processes remains enigmatic. Here, we described a growth control circuit that ties the photosynthetic function to translational control in response to biotic and abiotic signals. We showed first that the downstream component of the NIK1/RPL10 antiviral signaling module, LIMYB, which represses translation-related genes and translation, also suppresses photosynthesis-related genes and photosynthesis. LIMYB repressing activity was the primary determinant for the decrease in the photosynthetic function in the LIMYB-overexpressing lines, which was linked to the NIK1 antiviral signaling and stunted growth. NIK1 activation by viral or bacterial PAMPs, or expressing a constitutively activated NIK1 mutant, T474D, repressed the photosynthesis-related genes and photosynthesis in control lines but not in lymyb.
DOI: 10.15468/dl.e36fbk
title: Occurrence Download

description: A dataset containing 5772 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Eurycea wilderae Dunn, 1920)"
 ]
}

 The dataset includes 5772 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000678-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24s3ub
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eukerria tucumana Cordero, 1942",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000679-250214102907787/datasets/export for details.
DOI: 10.5281/zenodo.12938842
title: High-speed video recordings of metal powder pneumatic conveying in thin capillary pipes

description: Data collection of high-speed video recordings of the horizontal pneumatic conveying of metallic powders in thin capillary pipes. An experimental setup utilizing high-speed cameras and specialized optics was constructed to collect the conveying flow characteristics. The data here presented can be processed using ImageJ/Fiji, and using the TrackMate package (see https://github.com/trackmate-sc/TrackMate/pull/296). The videos can be loaded to Fiji using the FFMPG package.
DOI: 10.5281/zenodo.12938843
title: High-speed video recordings of metal powder pneumatic conveying in thin capillary pipes

description: Data collection of high-speed video recordings of the horizontal pneumatic conveying of metallic powders in thin capillary pipes. An experimental setup utilizing high-speed cameras and specialized optics was constructed to collect the conveying flow characteristics. The data here presented can be processed using ImageJ/Fiji, and using the TrackMate package (see https://github.com/trackmate-sc/TrackMate/pull/296). The videos can be loaded to Fiji using the FFMPG package.
DOI: 10.57967/hf/4498
title: PS_Alaska
DOI: 10.15468/dl.9ck8x4
title: Occurrence Download

description: A dataset containing 222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Locality is one of (GUAYATA&BOYACA, GUAYATA-FONSAQUE, KMS: 3, DIRECCION: SUR, VEREDA C, GUAYATA-SOMONDOCO, KMS: 7, DIRECCION: SUR, VEREDA , Guayata-Somondoco, Boyacá, CO (4,961, -73,477), Guayata-Somondoco, Boyacá, CO (4,984, −73,449), Guayata-Somondoco, Boyacá, CO (4.96, -73.477), Guayata-Somondoco, Boyacá, CO (4.961, -73.477), Guayata-Somondoco, Boyacá, CO (4.961, -73.477)., Guayata-Somondoco, Boyacá, CO (4.961, -73.478))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 222 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000680-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hp9py
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pygmaeodrilus lacuum Beddard, 1893",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000681-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.