cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24151247
title: Additional file 6 of Comparative transcriptomic analysis of wheat cultivars differing in their resistance to Fusarium head blight infection during grain-filling stages reveals unique defense mechanisms at play

description: Additional file 6: Table S5-9. Gene Set Enrichment Analysis (GSEA) to identify the overrepresented pathways in each comparison Su3_vs_A1589_T3.
DOI: 10.6084/m9.figshare.24151247.v1
title: Additional file 6 of Comparative transcriptomic analysis of wheat cultivars differing in their resistance to Fusarium head blight infection during grain-filling stages reveals unique defense mechanisms at play

description: Additional file 6: Table S5-9. Gene Set Enrichment Analysis (GSEA) to identify the overrepresented pathways in each comparison Su3_vs_A1589_T3.
DOI: 10.17608/k6.auckland.17335019
title: Hadden King penguin head Siemens CT S4020

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.24151250
title: Additional file 7 of Comparative transcriptomic analysis of wheat cultivars differing in their resistance to Fusarium head blight infection during grain-filling stages reveals unique defense mechanisms at play

description: Additional file 7: Table S6. Selected genes and the their primers for RT-qPCR analysis*.
DOI: 10.17608/k6.auckland.17335022
title: Hadden King penguin head Siemens CT S5010

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.24151250.v1
title: Additional file 7 of Comparative transcriptomic analysis of wheat cultivars differing in their resistance to Fusarium head blight infection during grain-filling stages reveals unique defense mechanisms at play

description: Additional file 7: Table S6. Selected genes and the their primers for RT-qPCR analysis*.
DOI: 10.5281/zenodo.10623647
title: Supporting data to Interspecies comparison of metabolism of two novel prototype PFAS

description: This is the Supporting data to the publication Interspecies comparison of metabolism of two novel prototype PFAS. doi:10.1016/j.chemosphere.2024.141237
DOI: 10.5281/zenodo.10623648
title: Supporting data to Interspecies comparison of metabolism of two novel prototype PFAS

description: This is the Supporting data to the publication Interspecies comparison of metabolism of two novel prototype PFAS. doi:10.1016/j.chemosphere.2024.141237
DOI: 10.17608/k6.auckland.17335037
title: Hadden Little penguin diceCT Amira reconstructions

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.17608/k6.auckland.17335037.v1
title: Hadden Little penguin diceCT Amira reconstructions

description: Part of collection that contains images obtained during scanning and dissection of the heads of little penguins (<i>Eudyptula minor</i>) from Auckland, king penguins (<i>Aptenodytes patagonicus</i>) and gentoo penguins (<i>Pygoscelis papua</i>), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil as well as renders made from these images.
DOI: 10.6084/m9.figshare.6848024
title: MOESM1 of Activated gastric cancer-associated fibroblasts contribute to the malignant phenotype and 5-FU resistance via paracrine action in gastric cancer

description: Additional file 1. Information data of the cases enrolled in this study. This file includes the clinicopathological information of cases enrolled in this study.
DOI: 10.17608/k6.auckland.17335058.v2
title: Hadden Little penguin skull Amira Arcus jugalis

description: Part of collection that contains images obtained during dissection of the heads of little penguins (Eudyptula minor) from Auckland, king penguins (Aptenodytes patagonicus) and gentoo penguins (Pygoscelis papua), the latter two descended from penguins from South Georgia. It also contains a video of the eye of a little penguin from Auckland viewed under both bright (photopic) and dim (mesopic) conditions, while undergoing general anaesthesia, to show the movement of the pupil.
DOI: 10.6084/m9.figshare.12090471
title: Design of a powered ankle-foot prosthesis with an adjustable stiffness toe joint

description: This paper proposes a powered ankle-foot prosthesis called PANTOE II, which includes an ankle and a segmented foot with a toe joint. The ankle and toe joints are both driven by series elastic actuators, which can reduce the required velocity and energy consumption of the actuators. The mechanical design of the ankle and toe joints makes the prosthesis more compact. In addition, PANTOE II employs a more human-like foot, which includes the heel, the mid foot, and the toe. Both the heel and the toe are made of leaf springs, and the mid foot is used to install the transmission mechanisms. The finite state control strategy is used for controlling the prosthesis. To evaluate the basic performance of PANTOE II, experiments are conducted on a subject with a transtibial amputation. Wearing PANTOE II, the amputee feels more comfortable and presents more symmetrical walking gaits.
DOI: 10.6084/m9.figshare.20479553.v1
title: Additional file 2 of Maintenance versus replacement of medical equipment: a cost-minimization analysis among district hospitals in Nepal

description: Additional file 2. Full cost calculations and formatted data. Detailed steps of the cost calculation and all data needed for replication in pre-processed format.
DOI: 10.6084/m9.figshare.20479629.v1
title: Additional file 4 of Integration of protein context improves protein-based COVID-19 patient stratification

description: Additional file 4: Table S3. The complexs, differential proteins and enriched pathways used as features.
DOI: 10.6084/m9.figshare.6848075.v1
title: Additional file 6: of Antennal transcriptome analysis of the chemosensory gene families in Carposina sasakii (Lepidoptera: Carposinidae)

description: Expression levels of candidate olfactory receptors measured in the RNA-Seq analysis. (XLSX 58 kb)
DOI: 10.5281/zenodo.10623694
title: La sombra - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Benito Pérez Galdós, "La sombra", 1871

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.5281/zenodo.10623695
title: La sombra - AmadissigloXX

description: AmadissigloXX. Base de datos de las reescrituras modernas de los libros de caballerías y del Don Quijote (dir. Elisabetta Sarmati)

Ficha de: Benito Pérez Galdós, "La sombra", 1871

Se ofrecen dos ficheros:



formato JSON: contiene los metadatos asociados a la obra (autor, fuente, año de publicación, idioma, sinopsis del argumento, anotaciones, fuentes caballerescas, bibliografía crítica, enlaces externos)

formato XML: contiene la base de datos completa con indicación de la versión.
DOI: 10.6084/m9.figshare.12090984.v1
title: Genome-wide identification and characterisation of long non-coding RNAs in two Chinese cattle breeds

description: Long non-coding RNAs (lncRNAs) have been essentially involved in all kinds of important biological processes, such as cell differentiation and development. In this study, we comprehensively profiled genome-wide lncRNAs of bovine skeletal muscle in two Chinese cattle breeds using RNA-seq approach. The longissimus dorsi samples were collected from three Charolais (CH) and three Tongjiang (TJ) adult cattle, respectively. Approximately 80 million reads were obtained per library, and by which we assembled 31,009 unique transcripts. We successfully identified a total of 4155 different lncRNAs in six muscle samples, consisting of 3204 intronic lncRNAs, 737 intergenic lncRNAs, 113 sense lncRNAs and 101 antisense lncRNAs. Among them, 32 lncRNAs were differentially expressed (Fold Change &gt;1.0, FDR &lt; 0.05) between CH and TJ. Among these lncRNAs, 1744 identified bovine lncRNAs were located adjacent to 1146 protein-coding genes (&lt;100 kb upstream and downstream) and functionally enriched in organ development, gene regulation and signal transduction. Our results provide a catalogue of bovine skeletal muscle-related lncRNAs, which will complement the list of bovine lncRNAs and contribute to understanding of the molecular mechanism of underpinning muscle development in cattle.HighlightsThe first study to compare specialised beef cattle breed with Chinese local beef cattle breed on long non-coding RNA (lncRNA).The 4155 different lncRNAs in beef cattle genome were identified to complement the list of bovine lncRNAs.The 1146 protein-coding genes were found maybe in cis-regulatory relationships with lncRNAs to understand the molecular mechanism underpinning muscle development in cattle.
 The first study to compare specialised beef cattle breed with Chinese local beef cattle breed on long non-coding RNA (lncRNA). The 4155 different lncRNAs in beef cattle genome were identified to complement the list of bovine lncRNAs. The 1146 protein-coding genes were found maybe in cis-regulatory relationships with lncRNAs to understand the molecular mechanism underpinning muscle development in cattle.
DOI: 10.6084/m9.figshare.6847721.v1
title: Additional file 1: of Molecular mechanism of estrogen-mediated neuroprotection in the relief of brain ischemic injury

description: Differentially expressed genes identified by RNA-seq. The excel lists a total of 400 probes with the expression level changed, and those probes involved 321 differentially expressed genes between estrogen-treated intraluminal middle cerebral artery occlusion (MCAO) rat group and untreated MCAO rat group (p-valueâ &lt;â 0.05). (XLSX 42 kb)
DOI: 10.6084/m9.figshare.16807793.v1
title: Additional file 7 of Glutamine involvement in nitrogen regulation of cellulase production in fungi

description: Additional file 7: Table S7. Genes involved in nitrogen and carbon catabolite repression in T. reesei RUT-C30.
DOI: 10.6084/m9.figshare.13139337.v1
title: Aminoglycoside riboswitch control of the expression of integron associated aminoglycoside resistance adenyltransferases

description: The proliferation of antibiotic resistance has its origins in horizontal gene transfer. The class 1 integrons mediate gene transfer by assimilating antibiotic-resistance genes through site-specific recombination. For the class 1 integrons the first assimilated gene normally encodes an aminoglycoside antibiotic resistance protein which is either an aminoglycoside acetyltransferase (AAC), nucleotidyltransferase – (ANT), or adenyl transferase (AAD). An aminoglycoside-sensing riboswitch RNA in the leader RNA of AAC/AAD that controls the expression of aminoglycoside resistance genes has been previously described. Here we explore the relationship between the recombinant products of integron recombination and a series of candidate riboswitch RNAs in the 5ʹ UTR of <i>aad</i> (aminoglycoside adenyltransferases) genes. The RNA sequences from the 5ʹ UTR of the <i>aad</i> genes from pathogenic strains that are the products of site-specific DNA recombination by class 1 integrons were investigated. Reporter assays, MicroScale Thermophoresis (MST) and covariance analysis revealed that a functional aminoglycoside-sensing riboswitch was selected at the DNA level through integron-mediated site-specific recombination. This study explains the close association between integron recombination and the aminoglycoside-sensing riboswitch RNA.
DOI: 10.6084/m9.figshare.13139337.v3
title: Aminoglycoside riboswitch control of the expression of integron associated aminoglycoside resistance adenyltransferases

description: The proliferation of antibiotic resistance has its origins in horizontal gene transfer. The class 1 integrons mediate gene transfer by assimilating antibiotic-resistance genes through site-specific recombination. For the class 1 integrons the first assimilated gene normally encodes an aminoglycoside antibiotic resistance protein which is either an aminoglycoside acetyltransferase (AAC), nucleotidyltransferase – (ANT), or adenyl transferase (AAD). An aminoglycoside-sensing riboswitch RNA in the leader RNA of AAC/AAD that controls the expression of aminoglycoside resistance genes has been previously described. Here we explore the relationship between the recombinant products of integron recombination and a series of candidate riboswitch RNAs in the 5ʹ UTR of <i>aad</i> (aminoglycoside adenyltransferases) genes. The RNA sequences from the 5ʹ UTR of the <i>aad</i> genes from pathogenic strains that are the products of site-specific DNA recombination by class 1 integrons were investigated. Reporter assays, MicroScale Thermophoresis (MST) and covariance analysis revealed that a functional aminoglycoside-sensing riboswitch was selected at the DNA level through integron-mediated site-specific recombination. This study explains the close association between integron recombination and the aminoglycoside-sensing riboswitch RNA.
DOI: 10.6084/m9.figshare.6847754
title: Additional file 3: of Molecular mechanism of estrogen-mediated neuroprotection in the relief of brain ischemic injury

description: The degrees of nodes in protein-protein interaction network. The excel describes the up/down-regulated status and degrees of 243 nodes in the PPI network. A total of 119 nodes were up-regulated genes and 124 nodes were down-regulated genes. The nodes degrees were ranged from 37 to 1. (XLSX 227 kb)
DOI: 10.25386/genetics.12616691
title: Supplemental Material for Baiocchi et al., 2020

description: Supplemental materials for Baiocchi et al. 2020, Signaling by AWC olfactory neurons is necessary for <i>C. elegans’ </i>response to<i> </i>prenol, an odor associated with nematode-infected insects.
DOI: 10.6084/m9.figshare.13141420
title: Epigenome-wide association study identifies DNA methylation sites associated with target organ damage in older African Americans

description: Target organ damage (TOD) manifests as vascular injuries in the body organ systems associated with long-standing hypertension. DNA methylation in peripheral blood leukocytes can capture inflammatory processes and gene expression changes underlying TOD. We investigated the association between epigenome-wide DNA methylation and five measures of TOD (estimated glomerular filtration rate (eGFR), urinary albumin-creatinine ratio (UACR), left ventricular mass index (LVMI), relative wall thickness (RWT), and white matter hyperintensity (WMH)) in 961 African Americans from hypertensive sibships. A multivariate (multi-trait) model of eGFR, UACR, LVMI, and RWT identified seven CpGs associated with at least one of the traits (cg21134922, cg04816311 near <i>C7orf50</i>, cg09155024, cg10254690 near <i>OAT</i>, cg07660512, cg12661888 near <i>IFT43</i>, and cg02264946 near <i>CATSPERD</i>) at FDR q &lt; 0.1. Adjusting for blood pressure, body mass index, and type 2 diabetes attenuated the association for four CpGs. DNA methylation was associated with <i>cis</i>-gene expression for some CpGs, but no significant mediation by gene expression was detected. Mendelian randomization analyses suggested causality between three CpGs and eGFR (cg04816311, cg10254690, and cg07660512). We also assessed whether the identified CpGs were associated with TOD in 614 African Americans in the Hypertension Genetic Epidemiology Network (HyperGEN) study. Out of three CpGs available for replication, cg04816311 was significantly associated with eGFR (p = 0.0003), LVMI (p = 0.0003), and RWT (p = 0.002). This study found evidence of an association between DNA methylation and TOD in African Americans and highlights the utility of using a multivariate-based model that leverages information across related traits in epigenome-wide association studies.
DOI: 10.6084/m9.figshare.20479677.v1
title: Additional file 2 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 2. Table S1. DE miRNA target genes.
DOI: 10.5281/zenodo.10620336
title: Breviloquia Italica dataset

description: This resource contains the ids of all tweet analysed by the Breviloquia Italica project.
DOI: 10.5281/zenodo.10620337
title: Breviloquia Italica dataset

description: This resource contains the ids of all tweet analysed by the Breviloquia Italica project.
DOI: 10.6084/m9.figshare.20479626.v1
title: Additional file 3 of Integration of protein context improves protein-based COVID-19 patient stratification

description: Additional file 3: Table S2. The total 868 features based on 331 proteins.
DOI: 10.6084/m9.figshare.20479683
title: Additional file 4 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 4. Overlap between DEGs and DE miRNA targets during high temperature treatment at 8 day.
DOI: 10.6084/m9.figshare.6847871
title: Additional file 2: of Interleukin-15 facilitates muscle regeneration through modulation of fibro/adipogenic progenitors

description: Figure S1. Flow cytometric gating strategy for isolation FAPs using FACS. Figure S2. The number of FAPs dropped quickly after 3 dpi, IL-15 can promote the growth of FAPs. (a) Representative immunofluorescence images of TA sections after glycerol injection. (b) Quantification of number of FAPs in TA muscles after administration of IL-15. (c) The growth of FAPs can be stimulated by IL-15 in vitro. Figure S3. IL-15 enhances collagen deposition in muscle with CTX injection. (a) A shcematic showing the experiment in vivo: IL-15 was administered from 1dpi to 3 dpi after CTX injection and samples were sectioned on 10 dpi. (b) Immunofluorescence for collagen I after IL-15 injection in injured muscle 5 dpi. Scale bar, 20Îźm. (c) Quantification of collagen deposition area (shown in percentage). (ZIP 2164 kb)
DOI: 10.6084/m9.figshare.13662558
title: Additional file 2 of Circ_0000020 elevates the expression of PIK3CA and facilitates the malignant phenotypes of glioma cells via targeting miR-142-5p

description: Additional file 2. The targets of miR-142-5p in StarBase, miRDB and TargetScan databases.
DOI: 10.6084/m9.figshare.20479686
title: Additional file 5 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 5. Overlap between DEGs and DE miRNA targets during high temperature treatment at 24 day.
DOI: 10.6084/m9.figshare.20479698.v1
title: Additional file 9 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 9. Overlap between DEGs and DMR-associated genes during high temperature treatment at 24 day.
DOI: 10.5519/qd.tgh7z96e
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.8945123
title: Grain consumption and risk of gastric cancer: a meta-analysis

description: This study evaluated the relationship between grain consumption and the risk of gastric cancer. A total of 19 studies met the inclusion criteria. For whole grain consumption, there was a 13% reduction in the risk of gastric cancer (<i>p</i> = .003), and a subgroup analysis showed that a large amount of whole grain consumption reduced the risk of gastric cancer by 44% (<i>p</i> &lt; .001). For refined grain consumption, there was a 36% increase in the risk of gastric cancer (<i>p</i> &lt; .001); a subgroup analysis showed that a large and a moderate amount of refined grain consumption increased the risk of gastric cancer by 63% (<i>p</i> &lt; .001) and 28% (<i>p</i> &lt; .001), respectively. A large intake of whole grains might be protective against gastric cancer, whereas the ingestion of refined cereals may be a risk factor for gastric cancer. Moreover, the risk of cancer increases with the increase of refined grain intake.
DOI: 10.6084/m9.figshare.20479677
title: Additional file 2 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 2. Table S1. DE miRNA target genes.
DOI: 10.6084/m9.figshare.20479692
title: Additional file 7 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 7. DMR-associated genes.
DOI: 10.6084/m9.figshare.20479686.v1
title: Additional file 5 of Molecular basis of high temperature-induced bolting in lettuce revealed by multi-omics analysis

description: Additional file 5. Overlap between DEGs and DE miRNA targets during high temperature treatment at 24 day.
DOI: 10.4121/6a696ee6-bed5-48b6-84cd-11385da2ee56
title: Data for the publication: Scaling ice-induced vibrations by combining replica modeling and preservation of kinematics

description: These data refer to the second test campaign of the SHIVER project, conducted in the Ice and Wave tank of Aalto University in spring 2023.Basin tests were performed to gather data on ice action, ice-structure interaction and ice scaling to predict ice-induced vibration of offshore structures (e.g., offshore wind turbines, lighthouses, channel markers).Tests were conducted with a real-time hybrid test setup, which had been used during the first test campaign of the SHIVER project (go to publication, go to data). Small modification of the setup allowed to test substructures with different diameters and shape at the water line and improved data reliability.Detailed explanations of the test setup, test matrix, and test results are provided in the publication <em>Scaling ice-induced vibrations by combining replica modeling and preservation of kinematics</em> published by Cold Regions Science and Technology. Refer to the README.pdf file for more information about the data uploaded. Contact Tim C. Hammer (t.c.hammer@tudelft.nl) for additional information.
DOI: 10.6084/m9.figshare.20479626
title: Additional file 3 of Integration of protein context improves protein-based COVID-19 patient stratification

description: Additional file 3: Table S2. The total 868 features based on 331 proteins.
DOI: 10.6084/m9.figshare.20479629
title: Additional file 4 of Integration of protein context improves protein-based COVID-19 patient stratification

description: Additional file 4: Table S3. The complexs, differential proteins and enriched pathways used as features.