cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.rlxfji
title: Occurrence Download

description: A dataset containing 12516 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 {
 "or" : [
 "Issue is Geodetic datum assumed WGS84",
 "Issue is Coordinate rounded",
 "Issue is Coordinate reprojected"
 ]
 },
 "Year 1950-2018",
 "TaxonKey is Perissodactyla"
 ]
}

 The dataset includes 12516 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007794-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slvidv
title: Occurrence Download

description: A dataset containing 11851 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Psilocybe (Fr.) P.Kumm."
 ]
}

 The dataset includes 11851 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008004-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myfbhx
title: Occurrence Download

description: A dataset containing 19718 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lama guanicoe (Müller, 1776)"
 ]
}

 The dataset includes 19718 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065676-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kndcql
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "TaxonKey is Porzana pusilla (Pallas, 1776)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007794-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc298c
title: Occurrence Download

description: A dataset containing 570 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turnix nanus (Sundevall, 1850)"
 ]
}

 The dataset includes 570 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0390419-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avx9ck
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba doerfleri Wettst."
 ]
}

 The dataset includes 62 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061804-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azvcvv
title: Occurrence Download

description: A dataset listing the 448 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "TaxonKey is Prunus persica (L.) Stokes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 448 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006329-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fetuwn
title: Occurrence Download

description: A dataset containing 5776 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyptis suaveolens (L.) Poit."
 ]
}

 The dataset includes 5776 records from 232 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052271-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxx5f2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.12_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhogeessa H.Allen, 1866"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007291-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7ya72
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-3.90358 40.26421,-3.38997 40.26421,-3.38997 40.63499,-3.90358 40.63499,-3.90358 40.26421))",
 "OccurrenceStatus is Present",
 "PublishingOrg is 4c91866b-3c2e-4568-aca0-3ab0a1c1a45e"
 ]
}

 The dataset includes 171 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087739-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29ydwt
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Occurrence records of southern African aquatic biodiversity",
 "Issue is Coordinate out of range"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052249-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqzppd
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Paraguay",
 "Country is Argentina"
 ]
 },
 "TaxonKey is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 210 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008005-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3c36n4
title: Occurrence Download

description: A dataset containing 83368 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepisosteus oculatus Winchell, 1864"
 ]
}

 The dataset includes 83368 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058032-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne9sy3
title: Occurrence Download

description: A dataset containing 3107 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Selaginella hoffmannii Hieron.",
 "TaxonKey is Selaginella reflexa Underw.",
 "TaxonKey is Selaginella martensii Spring",
 "TaxonKey is Selaginella oaxacana Spring",
 "TaxonKey is Selaginella flexuosa Spring",
 "TaxonKey is Selaginella moritziana Spring ex Klotzsch"
 ]
}

 The dataset includes 3107 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007795-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kk14k
title: Occurrence Download

description: A dataset containing 22695 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Year 2018-2019",
 "Geometry POLYGON((3.20716 50.85958,10.24558 50.85958,10.24558 53.67208,3.20716 53.67208,3.20716 50.85958))",
 "HasCoordinate is true",
 "TaxonKey is Ciconia ciconia (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 22695 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008005-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62ywvx
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Valeriana serrata Ruiz & Pav."
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007795-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhyp8p
title: Occurrence Download

description: A dataset containing 1621738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is 2002",
 "Month is August",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 1621738 records from 1904 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034994-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26599358.v1
title: Additional file 6 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 6. cROSA, cHIPP, and cOVA gRNA were designed by CHOPCHOP online software.
DOI: 10.6084/m9.figshare.26599367
title: Additional file 9 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 9. Verification of CRISPR-mediated knock-ins in the chicken GSH loci and non-GSH locus.
DOI: 10.6084/m9.figshare.26599367.v1
title: Additional file 9 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 9. Verification of CRISPR-mediated knock-ins in the chicken GSH loci and non-GSH locus.
DOI: 10.6084/m9.figshare.26599382
title: Additional file 14 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 14. Images of heterogenous cell pools harboring ΔCMV-EGFP for analyzing by ImageJ software.
DOI: 10.18150/s9p4iq
title: Integrated stratigraphy and clay mineralogy of the Owadów–Brzezinki section (Lower–Upper Tithonian transition, central Poland): implications for correlations between the Boreal and the Tethyan domains and palaeoclimate

description: Supplementary data re-interpreted during the implementation of the project of the National Science Centre, Poland entitled "Late Jurassic restricted environments of the shallow-water carbonate succession of NW and NE margins of the Holy Cross Mts as a place of accumulation of unusual fossils".An Excel file contains results of chemical analyses of bulk carbonate samples from the Owadów-Brzezinki quarry in central Poland. A link to the resulting publication will be provided.
DOI: 10.6084/m9.figshare.26599361
title: Additional file 7 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 7. Different cell lines generated and used in this study.
DOI: 10.6084/m9.figshare.26599361.v1
title: Additional file 7 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 7. Different cell lines generated and used in this study.
DOI: 10.6084/m9.figshare.26599379.v1
title: Additional file 13 of Integrating Omics and CRISPR Technology for Identification and Verification of Genomic Safe Harbor Loci in the Chicken Genome

description: Additional file 13. Images of heterogenous cell pools harboring CMV-EGFP for analyzing by ImageJ software.
DOI: 10.15468/dl.s89a6a
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.31.1_1, CHN.31.3_1, CHN.31.2_1, CHN.31.8_1, CHN.31.6_1)",
 "TaxonKey is Anser cygnoides (Linnaeus, 1758)"
 ]
}

 The dataset includes 151 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066556-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frk73q
title: Occurrence Download

description: A dataset containing 5645966 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is USA.16_1"
 ]
}

 The dataset includes 5645966 records from 602 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066472-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u68shx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((144.479778 -36.869814, 144.479778 -36.874306, 144.486515 -36.874306, 144.486515 -36.869814, 144.479778 -36.869814)), ((144.486515 -36.874306, 144.486515 -36.876552, 144.488761 -36.876552, 144.488761 -36.874306, 144.486515 -36.874306)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066558-240626123714530/datasets/export for details.
DOI: 10.15468/dl.kdx8qj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.275178 -32.461311, 148.275178 -32.465802, 148.281916 -32.465802, 148.281916 -32.461311, 148.275178 -32.461311))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066557-240626123714530/datasets/export for details.
DOI: 10.5281/zenodo.13318541
title: The Unreasonable Ineffectiveness of Nucleus Sampling on Mitigating Text Memorization

description: We present OpenMemText a diagnostic dataset with a known distribution of duplicates that gives us some control over the likelihood of memorization of certain parts of the training data. Given this diagnostic dataset, we analyse the text memorization behavior of large language models (LLMs) when subjected to nucleus sampling.

Stochastic decoding methods like nucleus sampling are typically applied to overcome issues such as monotonous and repetitive text generation, which are often observed with maximization-based decoding techniques. We hypothesize that nucleus sampling might also reduce the occurrence of memorization patterns, because it could lead to the selection of tokens outside the memorized sequence.

See https://github.com/lukaborec/memorization-nucleus-sampling for more information.
DOI: 10.5281/zenodo.13318542
title: The Unreasonable Ineffectiveness of Nucleus Sampling on Mitigating Text Memorization

description: We present OpenMemText a diagnostic dataset with a known distribution of duplicates that gives us some control over the likelihood of memorization of certain parts of the training data. Given this diagnostic dataset, we analyse the text memorization behavior of large language models (LLMs) when subjected to nucleus sampling.

Stochastic decoding methods like nucleus sampling are typically applied to overcome issues such as monotonous and repetitive text generation, which are often observed with maximization-based decoding techniques. We hypothesize that nucleus sampling might also reduce the occurrence of memorization patterns, because it could lead to the selection of tokens outside the memorized sequence.

See https://github.com/lukaborec/memorization-nucleus-sampling for more information.
DOI: 10.15468/dl.pxpgm9
title: Occurrence Download

description: A dataset containing 32847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies alba Mill.)",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)",
 "CoordinateUncertaintyInMeters is greater than or equal to 0",
 "CoordinateUncertaintyInMeters is less than 1000",
 "Year is greater than or equal to 1980",
 "Year is less than 2020",
 "DecimalLatitude is greater than or equal to 25.5783562832625",
 "DecimalLongitude is greater than or equal to -18.4765212807951",
 "DecimalLatitude is less than 54.9607150324726",
 "DecimalLongitude is less than 43.5810723331503",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 32847 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066559-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhxdvr
title: Occurrence Download

description: A dataset containing 6750664 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 1970-2024"
 ]
}

 The dataset includes 6750664 records from 3997 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066480-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yec24n
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-47.79670 12.58863,94.00512 12.58863,94.00512 69.28508,-47.79670 69.28508,-47.79670 12.58863))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oulema melanopus (Linnaeus, 1761)"
 ]
}

 The dataset includes 137 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014231-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zs8zsz
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-47.79670 12.58863,94.00512 12.58863,94.00512 69.28508,-47.79670 69.28508,-47.79670 12.58863))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oulema melanopus (Linnaeus, 1761)"
 ]
}

 The dataset includes 137 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014230-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14161489
title: balebreviceps_hillmani_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14161490
title: balebreviceps_hillmani_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14161542
title: Mulancongjun_Xinshuilingcaicong_05_Chenchao_fbx
DOI: 10.5281/zenodo.14161543
title: Mulancongjun_Xinshuilingcaicong_05_Chenchao_fbx
DOI: 10.15468/dl.rdbaeq
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Theropogon pallidus (Wall. ex Kunth) Maxim.)"
 ]
}

 The dataset includes 86 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014232-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4eabha
title: Occurrence Download

description: A dataset containing 96440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Rana temporaria Linnaeus, 1758"
 ]
}

 The dataset includes 96440 records from 164 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014228-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14161516
title: basiliscus_vittatus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14161517
title: basiliscus_vittatus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14161526
title: boa_constrictor_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.14161527
title: boa_constrictor_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.mnxkwb
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.10.41.1_1",
 "TaxonKey is Erinaceus europaeus Linnaeus, 1758",
 "Year 2019-2024"
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014235-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10081280
title: Latitudinal gradients in air density create "invisible topography" at sea level affecting animal flight costs

description: Data and code supporting the findings of the study: 

For details about the attributes in the data files please see the "README.txt" file.

Code included in the study:

The R script:"Shepard et al_Changing_air_density_affects_flight_costs_in_low_flying birds.R" is used to run the statistical tests and models presented in the study.

The R script: "Shepard et al_density matters at sea level_script_DensityAltitudeEstimation.R" , is used to estimate Density altitude based on the air density over the ocean downloaded from the ERA5 monthly means global re-analysis. For details please see the supplementary information of the study.

The R script: "EstimatePowerBasedOnAirDensityOverTheOcean.R" , is used to estimate flight power based on the air density over the ocean downloaded from the ERA5 monthly means global re-analysis. The data for this script is provided in the files: ERA5_AirDensityOverTheOcean_WithEstimatedPower_DJF_Months.csv, ERA5_AirDensityOverTheOcean_WithEstimatedPower_JJA_Months.csv and ERA5_AirDensityOverTheOcean_WithEstimatedPower_For_JJA_AndDJF_Months.csv

and the shapefile in the zip file: RedTailedTropicBirds_Distribution.zip

For details please see the supplementary information of the study.