cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.bzkh1897n
title: Data from: Phylogeny of gracillariid leaf-mining moths: evolution of larval behaviour inferred from phylogenomic and Sanger data

description: Gracillariidae is the most taxonomically diverse cosmopolitan leaf-mining
 moth family, consisting of nearly 2000 named species in 105 described
 genera, classified into eight extant subfamilies. The majority of
 gracillariid species are internal plant feeders as larvae, creating mines
 and galls in plant tissue. Despite their diversity and ecological
 adaptations, their phylogenetic relationships, especially at the subfamily
 level, remain largely uncertain. Genomic data (83 taxa and 589 loci) were
 integrated with Sanger data (130 taxa and 22 loci), to reconstruct a
 phylogeny of Gracillariidae. Based on analyses of both data sets combined
 and analyzed separately, the monophyly of Gracillariidae and all its
 subfamilies, and the monophyly of the clade ‘LAMPO’ (subfamilies:
 Lithocolletinae, Acrocercopinae, Marmarinae, Phyllocnistinae, and
 Oecophyllembiinae) and relationships of its subclade ‘AMO’ (subfamilies:
 Acrocercopinae, Marmarinae, and Oecophyllembiinae) were strongly
 supported. A sister group relationship of Ornixolinae to the remainder of
 the family, and a monophyletic leaf roller lineage (Callicercops Vári +
 Parornichinae) + Gracillariinae, as sister to the ‘LAMPO’ clade were
 supported by the best hypotheses. Based on these results, a new subfamily,
 Callicercopinae Li, Ohshima et Kawahara, is established to accommodate the
 enigmatic genus Callicercops. Dating analyses indicate a mid-Cretaceous
 (105.3 Ma) origin of the family, followed by a rapid diversification into
 the nine subfamilies predating the K-Pg extinction. We hypothesize that
 advanced larval behaviours, such as making keeled or tentiform blotch
 mines, rolling leaves, and making galls, accelerated the diversification
 of Gracillariidae by avoiding larval parasitoids.
DOI: 10.5061/dryad.tht76hdz2
title: VCF files for D. serrata transposable elements

description: Transposable elements are an important element of the complex genomic
 ecosystem. Transposable element insertion also appears to be bursty –
 either due to invasion of new transposable elements that are not yet
 repressed, de-repression due to instability of organismal defense systems,
 stress, or genetic variation in hosts. Here, we characterize the
 transposable element landscape in an important model Drosophila, D.
 serrata, and investigate variation in transposable element copy number
 between genotypes and in the population at large.  We find that a
 subset of transposable elements are clearly related to elements annotated
 in D. melanogaster and D. simulans, suggesting they spread between species
 more recently than other transposable elements. We also find that some
 transposable elements proliferate in particular genotypes compared to
 population levels. In natural populations an active transposable element
 and a potentially permissive background would not be held in association
 as in inbred lines, thus this could be a product of inbreeding. Yet many
 of the inbred lines have actively proliferating transposable elements
 suggesting that active transposable elements are not uncommon and that
 genotypes vary in their permissiveness in populations.
DOI: 10.5061/dryad.q83bk3jh3
title: Behavioral patterns of bats at a wind turbine events

description: Bat fatalities at wind energy facilities in North America are
 predominantly comprised of migratory, tree-dependent species, but it is
 unclear why these bats are at higher risk. Factors influencing bat
 susceptibility to wind turbines might be revealed by temporal patterns in
 their behaviors around these dynamic landscape structures. In northern
 temperate zones fatalities occur mostly from July through October, but
 whether this reflects seasonally variable behaviors, passage of migrants,
 or some combination of factors remains unknown. In this study, we examined
 video imagery spanning one year in Colorado to characterize patterns of
 seasonal and nightly variability in bat behavior at a wind turbine. We
 detected bats on 177 of 306 nights representing approximately 3,800 hours
 of video and &gt; 2,000 discrete bat events. We observed bats
 approaching the turbine throughout the night across all months during
 which bats were observed. Two distinct seasonal peaks of bat activity
 occurred in July and September, representing 30% and 42% increases in
 discrete bat events from the preceding months June and August,
 respectively. Bats exhibited behaviors around the turbine that increased
 in both diversity and duration in July and September. The peaks in bat
 events were reflected in chasing and turbine approach behaviors. Many of
 the bat events involved multiple approaches to the turbine, including when
 bats were displaced through the air by moving blades. The seasonal and
 nightly patterns we observed were consistent with the possibility that
 wind turbines invoke investigative behaviors in bats in late summer and
 autumn coincident with migration, and that bats may return and fly close
 to wind turbines even after experiencing potentially disruptive stimuli
 like moving blades. Our results point to the need for a deeper
 understanding of the seasonality, drivers, and characteristics of bat
 movement across spatial scales.
description: det.id unique identifier of the bat
 detection 
 event.id unique
 identifier of the bat detection event (detections grouped by maximum of
 1-minute interval) 
 adj.date adjusted date of
 detection which is not affected by midnight (retains same date until after
 noon of following day) 
 orig.date original date of
 detection which is affected by midnight (i.e., changes at 2400
 hours) 
 dt.start time of
 detection start (hh:mm:ss) 
 dt.end time of
 detection end (hh:mm:ss) 
 det.dur cumulative time
 of detection (seconds) 
 frac time of
 detection as a fraction of night (scaled as 0 to 1 relative to sunset and
 sunrise time) 
 bats.present total number of
 bats concurrently visible during the detection duration period
 
 state_1 to state_11 bat activity
 grouped by outcome (displacement, strike), flight behavior (chase,
 hovering, non-focal pass), and turbine structural location of close
 approaches (blade, nacelle, monopole). NA indicates no additional state
 observed.
DOI: 10.5061/dryad.ns1rn8prr
title: Post-copulatory sexual selection is associated with sperm aggregate quality in Peromyscus mice

description: In some species, sperm form coordinated groups that are hypothesized to
 improve their swimming performance in competitive contexts or to navigate
 through the viscous fluids of the female reproductive tract. Here we
 investigate sperm aggregation across closely-related species of Peromyscus
 mice that naturally vary by mating system to test the predictions that
 sperm aggregates (1) are faster than solitary sperm in species that
 females mate multiply to aid cells in sperm competition, and (2)
 outperform solitary sperm cells in viscous environments. We find
 significant variation in the size of sperm aggregates, which negatively
 associates with relative testis mass, a proxy for sperm competition
 risk, suggesting that post-copulatory sexual selection has a
 stabilizing effect on sperm group size. Moreover, our results show that
 sperm aggregates are faster than solitary sperm in some, but not all,
 species, and this can vary by fluid viscosity. Of the two species that
 produce the largest and most frequent groups, we find that sperm
 aggregates from the promiscuous P. maniculatus are faster than solitary
 sperm in every experimentally viscous environment but aggregation provides
 no such kinematic advantage under these same conditions for the monogamous
 P. polionotus. The reduced performance of P. polionotus aggregates is
 associated with less efficient aggregate geometry and the inclusion of
 immotile or morphological abnormal sperm. Our cross-species comparison
 yields insight into the evolution of sperm social behaviors, provides
 evidence of extensive variation in the Peromyscus lineage, and reveals
 that differences in sperm aggregate quality associate with post-copulatory
 sexual selection.
DOI: 10.5061/dryad.jh9w0vt9t
title: Structure from motion of the Ichilo riverbanks in Puerto Villarroel, Bolivia

description: Structure from motion photogrametry was used to survey the banks
 of the Ichilo river, in the city of Puerto Villarroel in Bolivia.
 The surveyed areas was of aproximately 300 hectares of
 terrain. A DJI Phantom 4 Pro and a DJI Mavic Pro was used for
 taking pictures. A total of 44 GCPs were marked along the
 riverbanks of the Ichilo and their coordinates were measured
 using a Real-time Kinematic (RTK) GPS unit. After the GCPs were marked,
 the UAVs were launched and the pictures were taken including the GCPs and
 a total of 1358 pictures were taken during the surveys. The imagery was
 analysed and processed using the software Agisoft PhotoScan and
 orthophotos. The GCPs were split in in two groups: the first
 group with thirty GCPs were used to correct the imagery, and the other 14
 were used to assess the accuracy of the imagery. The processed imagery
 taken in May, 2019 resulted in a orthomosaic and a digital
 elevation model (DEM). Also, particle size distributions of two samples
 taken in the the Ichilo river are presented.
description: A DJI Phantom 4 Pro and a DJI Mavic Pro was used for taking
 pictures. Details of the equipment, survey design and execution and other
 details are shown in the paper.  Before taking the imagery, we marked
 ground control points (GCPs) along the banks, wherever the access to the
 area was possible, in order to georeference the digital elevation model
 (DEM). The GCPs were white crosses (around 1m large) marked using latex
 painting that were easily visible in the aerial imagery. A total of 44
 GCPs were marked along the riverbanks and their coordinates were measured
 using a Real-time Kinematic (RTK) GPS unit. After the GCPs were marked,
 the UAVs were launched and the pictures were taken including the GCPs and
 a total of 1358 pictures were taken during the surveys. The imagery was
 analysed and processed using the software Agisoft PhotoScan.The GCPs were
 split in in two groups: the first group with thirty GCPs were used to
 correct the imagery, and the other 14 were used to assess the accuracy of
 the imagery. The mean positional errors of the 14 reserved GCPs were
 0.003, 0.004, and 0.06 m in the x, y and z directions, respectively. In
 addition, two granulometric samples are included in this
 dataset.
description: The following data is included in the dataset:
 1) DEM_PV: Digital Elevation model of 20cm/ pixel in
 TIF format 2) Orthomosaic_PV: Orthomosaic image  in
 TIF format of 15cm/pixel. 3) Points_RTK. shp : Ground
 control points location on .shp format 4)
 PSD.xls: Particle size distribution of soil samples in excel
 format. 5) GCPs.xls:  Coordinates of ground control
 points in the Ichilo river. 6) Soil_sample.shp:
 Location of the soil samples 7) Ichiloriver.shp:  Area
 that delimitate the Ichilo river, the data inside this shapefile should
 not be considered in the DEM.
DOI: 10.5061/dryad.wpzgmsbm6
title: Dynamic feedbacks among tree functional traits, termite populations and deadwood turnover

description: 1. Changes in the composition of plant functional traits may
 affect ecosystem processes through influencing trophic
 interactions. Bottom-up control by plant species through food availability
 to animals may vary with time. However, such dynamics and their
 consequences for deadwood turnover are poorly known for detrital
 food webs. 2. We introduce a dynamic conceptual model of the
 feedback of (deadwood-feeding) termite populations, tree functional
 traits and deadwood decomposition. We hypothesized that tree
 functional diversity (in terms of a wood resource economic spectrum, WES)
 supports the sustenance of termite populations via complementary food
 supplied through time, as deadwood varies in traits both initially between
 species and because of different decomposition
 rates. Simultaneously, the consumption of deadwood by termites
 was hypothesized to sustain deadwood turnover in a functionally diverse
 forest by the same temporal mechanism of changing wood quality of multiple
 species over time. 3. We tested our hypothesis through an 18-month
 termite-exclusion decomposition experiment by incubating coarse (i.e., 5
 cm diameter) deadwood of 34 woody species in two subtropical forests in
 East China. One site still sustained a healthy population of
 pangolins as the keystone termite predator, while another had lost its
 pangolins due to hunting and illegal wildlife trade. 4. The
 results supported our hypothesis: in the first 12 months, termites
 amplified the positive linear relationship between %
 wood mass loss and initial wood quality (WES). In contrast, between 12 and
 18 months, termite-mediated consumption, and associated wood mass
 loss, showed a humpback relation with the initial WES. This shift
 in termite preference of deadwood species along the WES
 indicated complementary food availability to termites
 through time. 5. Synthesis. Our
 findings imply that tree
 functional composition, through variation in deadwood quality
 through decomposition time, can help to sustain termite populations and
 thereby forest carbon
 turnover. Future studies need to test whether
 and how our conceptual model may apply to other detrital systems
 and food webs. In general, food web research would benefit from a stronger
 focus on temporal patterns for better understanding the interactions of
 basal resource functional traits and consumers on
 ecosystem functions.
description: The data was from field wood decmposition experiment, litter-bags
 were harvested after 6 months (July 2018), 12 months (Dec. 2018) and
 18 months (July 2019).
DOI: 10.5061/dryad.wpzgmsbm7
title: Male incubation feeding and fleas

description: Parasites exert a strong selection pressure on their hosts as manifested
 in behavioural antiparasite traits to reduce negative impacts on fitness.
 The numerous nest-dwelling ecto-parasites residing in avian nests make
 altricial birds excellent model-systems for investigating the relationship
 between parasites and their hosts. Here, we experimentally increased
 natural levels of hen fleas (Ceratophyllus gallinae) in blue tit
 (Cyanistes caeruleus) nests during incubation, and tested their effects on
 parental incubation behaviours and reproductive performance. Our
 experimental addition of fleas resulted in an increase in feeding effort
 of males to incubating females. Frequency of male feedings was also
 positively related to clutch size. These results suggest that males
 increase their reproductive effort in flea manipulated and large broods.
 This will, at least partly, compensate female costs in nests with high
 ecto-parasite density and many nestlings. Furthermore, nestling mass at
 day 6 in experimental nests decreased with brood size, which was not the
 case in nests with a natural level of fleas. In line with male incubation
 feeding, parents may try to compensate for the costs inflicted by the
 fleas but can only partly compensate when brood size is large.
description: Fleas were experimentally added to manipulated nestboxes of blue
 tits. Male incubation feeding to their females was
 estimated and the rate compared between control and manipulated
 nests.
description: Meta data Treatment: Nests with an addition
 of extra fleas during incubation or unmanipulated nests serving as
 controls. Area:
 The two nest box areas included in this study. Clutch size: Number of eggs
 produced. Brood
 size: Number of young hatched. Fledgling: Number of young that
 fledged. Feedings: Number of male feedings
 to their incubating female during 2 h. Incubation: The length of the
 incubation period in hours. Mass 6: The mean mass of
 nestlings at an age of 6 days. Mass 14: The mean mass of
 nestlings at an age of 14 days. Time in: Proportion of the total
 observation time that the female was inside the nest box. Fl success: Fledging success
 calculated as the ratio between number of fledged and number of hatched
 nestlings. Hatching success: Hatching
 success calculated as the ratio between number of hatched nestlings and
 clutch size.
DOI: 10.5061/dryad.hdr7sqvh1
title: Data from: A multi-taxa assessment of the effectiveness of agri-environmental schemes for biodiversity management

description: Agri-environmental schemes (AES) aim to restore biodiversity and
 biodiversity-mediated ecosystem services in landscapes impoverished by
 modern agriculture. However, a systematic, empirical evaluation of
 different AES types across multiple taxa and functional groups is missing.
 Within one orthogonal design, we studied sown flowering AES types with
 different temporal continuity, size, and landscape context and used
 calcareous grasslands as semi-natural reference habitat. We measured
 species richness of twelve taxonomic groups (vascular plants, cicadas,
 orthopterans, bees, butterflies, moths, hoverflies, flower visiting
 beetles, parasitoid wasps, carabid beetles, staphylinid beetles and birds)
 representing five trophic levels. A total of 54,955 specimens were
 identified using traditional taxonomic methods and bulk arthropod samples
 were identified through DNA metabarcoding, resulting in a total of 1077
 and 2110 taxa, respectively. Species richness of most taxonomic groups as
 well as multidiversity and richness of pollinators increased with temporal
 continuity of AES types. Some groups responded to size and landscape
 context but multidiversity and richness of pollinators and natural enemies
 were not affected. AES flowering fields supported different species
 assemblages than calcareous grasslands, but assemblages became more
 similar to those in semi-natural grasslands with increasing temporal
 continuity. Our results indicate that AES flowering fields and
 semi-natural grasslands function synergistically. Flowering fields support
 biodiversity even when they are relatively small and in landscapes with
 few remaining semi-natural habitats. We, therefore, recommend a network of
 smaller, temporally continuous AES flowering fields of different ages
 combined with permanent semi-natural grasslands to maximize benefits for
 biodiversity conservation and ecosystem service delivery in agricultural
 landscapes.
DOI: 10.5061/dryad.3tx95x6fn
title: Supporting data for: Evolutionary drivers, morphological evolution and diversity dynamics of a surviving mammal clade: cainotherioids at the Eocene-Oligocene transition

description: The Eocene-Oligocene transition (EOT) represents a period of global
 environmental changes particularly marked in Europe and coincides with a
 dramatic biotic turnover. Here, using an exceptional fossil preservation,
 we document and analyse the diversity dynamics of a mammal clade,
 Cainotherioidea (Artiodactyla), that survived the EOT and radiated rapidly
 immediately after. We infer their diversification history from Quercy
 Konzentrat-Lagerstätte (South-West France) at the species level using
 Bayesian birth-death models. We show that cainotherioid diversity
 fluctuated through time, with extinction events at the EOT and in the late
 Oligocene, and a major speciation burst in the early Oligocene. The latter
 is in line with our finding that cainotherioids had a high morphological
 adaptability following environmental changes throughout the EOT, which
 likely played a key role in the survival and evolutionary success of this
 clade in the aftermath. Speciation is positively associated with
 temperature and continental fragmentation in a time-continuous way, while
 extinction seems to synchronize with environmental change in a punctuated
 way. Within-clade interactions negatively affected the cainotherioid
 diversification, while inter-clade competition might explain their final
 decline during the late Oligocene. Our results provide a detailed dynamic
 picture of the evolutionary history of a mammal clade in a context of
 global change.
DOI: 10.5061/dryad.rfj6q5790
title: Genetic variation in Neotropical butterflies is associated with sampling scale, species distributions, and historical forest dynamics

description: Prior studies of butterfly diversification in the Neotropics have focused
 on Amazonia and the tropical Andes, while southern regions of the
 continent have received little attention. To address the gap in knowledge
 about the Lepidoptera of temperate South America, we analyzed over 3,000
 specimens representing nearly 500 species from Argentina for a segment of
 the mitochondrial COI gene. Representing 42% of the country’s butterfly
 fauna, collections targeted species from the Atlantic and Andean forests,
 biodiversity hotspots that were previously connected but are now isolated.
 We assessed COI effectiveness for species discrimination and
 identification and how its performance was affected by geographic
 distances and taxon coverage. COI data also allowed to study patterns of
 genetic variation across Argentina, particularly between populations in
 the Atlantic and Andean forests. Our results show that COI discriminates
 species well, but that identification success is reduced on average by
 ~20% as spatial and taxonomic coverage rises. We also found that levels of
 genetic variation are associated with species’ spatial distribution type,
 a pattern which might reflect differences in their dispersal and
 colonization abilities. In particular, intraspecific distance between
 populations in the Atlantic and Andean forests was significantly higher in
 species with disjunct distributions than in those with a continuous range.
 All splits between lineages in these forests dated to the Pleistocene, but
 divergence dates varied considerably, suggesting that historical
 connections between the Atlantic and Andean forests have differentially
 affected their shared butterfly fauna. Our study supports the fact that
 large-scale assessments of mitochondrial DNA variation are a powerful tool
 for evolutionary studies.
DOI: 10.15468/dl.yv4784
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonicera reticulata",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049557-250811113504898/datasets/export for details.
DOI: 10.15468/dl.kb8p7m
title: Occurrence Download

description: A dataset containing 158880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.31_2",
 "TaxonKey is Piciformes"
 ]
}

 The dataset includes 158880 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033694-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucj6r4
title: Occurrence Download

description: A dataset containing 1345 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.43679 47.37297,-70.11483 46.33581,-70.85704 45.23318,-71.72834 45.07388,-70.30845 43.59678,-66.92009 44.82265,-67.75912 45.70841,-67.79139 47.06612,-68.43679 47.37297))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Odocoileus virginianus"
 ]
}

 The dataset includes 1345 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033727-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.