cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11621601
title: EEG functional connectivity analysis for the study of the brain maturation in the first year of life

description: This dataset is related to 146 typically developing infants who underwent baseline electrophysiological (EEG) data recording at 6 (T6) and 12 (T12) months of age. The recordings were made using a dense-array EGI system (Geodesic EEG System (GES) 300 or 400, Electric Geodesic, In., Eugene, Oregon, USA) equipped with 60/64-electrode or 128-electrode caps (HydroCel Geodesic Sensor net).Whole-brain functional connectivity (FC) metrics were extracted, for multiple frequency bands with the aim to evaluate brain maturation in the first year of life in terms of EEG functional connectivity. In addition, Bayley test was administered at 24 months of age to explore possible relation between brain network connectivity and cognitive functions.

The dataset includes subjects’ sociodemographic and individual factors (such as age, sex, socioeconomic status, gestational week and birth weight); functional connectivity metrics (such as the magnitude-squared coherence index, phase lag index (PLI), and parameters characterizing the minimum spanning tree built from the PLI index) computed in the delta (2-4 Hz), theta (4-6 Hz), low-alpha (6-9-Hz), high-alpha (9-13 Hz), beta (13-30 Hz) and gamma (30-45 Hz) frequency bands; and the Bayley test raw scores, assessed at 24 months of age. 

In particular, each row in the database corresponds to a subject and each column to a different variable.Column A, Subject code;Column B, Time point: 1 = data related to the EEG recording performed at six months of age; 2 = data related to the EEG recording performed at twelve months of age;Column C, Sex: 0= males; 1=females;Column D, Age (expressed in days) at T6;Column E, Age (expressed in days) at T12;Column F, Family socio-economic status;Column G, Gestational age expressed in weeks;Column H, Birth weight expressed in grams;Column I and J, Bayley Cognitive Composite Score and Griffiths developmental quotient both assessed at 6 months of age;Column K and L, Number of electrodes of the used electrode-caps for T6 and T12, respectively;Columns from M to BM, FC metrics for all frequency bands;Columns from BO to BQ, raw cognitive, receptive and expressive Bayley test scores assessed at 24 months of age;Column BR, Composite language metric derived from the expressive and receptive Bayley scores.

 

If you use this dataset please cite the following manucript: Falivene, A.; Cantiani, C.; Dondena, C.; Riboldi, E.M.; Riva, V.; Piazza, C. EEG Functional Connectivity Analysis for the Study of the Brain Maturation in the First Year of Life. Sensors 2024, 24, 4979. All details about subjects, data acquisition and signal processing pipeline are described in the manuscript.
description: This research was funded by the Italian Ministry of Health (Ricerca Finalizzata SG-2019-12369935; Ricerca corrente; "5 per mille" funds for biomedical research).
DOI: 10.5281/zenodo.11621600
title: EEG functional connectivity analysis for the study of the brain maturation in the first year of life

description: This dataset is related to 146 typically developing infants who underwent baseline electrophysiological (EEG) data recording at 6 (T6) and 12 (T12) months of age. The recordings were made using a dense-array EGI system (Geodesic EEG System (GES) 300 or 400, Electric Geodesic, In., Eugene, Oregon, USA) equipped with 60/64-electrode or 128-electrode caps (HydroCel Geodesic Sensor net).Whole-brain functional connectivity (FC) metrics were extracted, for multiple frequency bands with the aim to evaluate brain maturation in the first year of life in terms of EEG functional connectivity. In addition, Bayley test was administered at 24 months of age to explore possible relation between brain network connectivity and cognitive functions.

The dataset includes subjects’ sociodemographic and individual factors (such as age, sex, socioeconomic status, gestational week and birth weight); functional connectivity metrics (such as the magnitude-squared coherence index, phase lag index (PLI), and parameters characterizing the minimum spanning tree built from the PLI index) computed in the delta (2-4 Hz), theta (4-6 Hz), low-alpha (6-9-Hz), high-alpha (9-13 Hz), beta (13-30 Hz) and gamma (30-45 Hz) frequency bands; and the Bayley test raw scores, assessed at 24 months of age. 

In particular, each row in the database corresponds to a subject and each column to a different variable.Column A, Subject code;Column B, Time point: 1 = data related to the EEG recording performed at six months of age; 2 = data related to the EEG recording performed at twelve months of age;Column C, Sex: 0= males; 1=females;Column D, Age (expressed in days) at T6;Column E, Age (expressed in days) at T12;Column F, Family socio-economic status;Column G, Gestational age expressed in weeks;Column H, Birth weight expressed in grams;Column I and J, Bayley Cognitive Composite Score and Griffiths developmental quotient both assessed at 6 months of age;Column K and L, Number of electrodes of the used electrode-caps for T6 and T12, respectively;Columns from M to BM, FC metrics for all frequency bands;Columns from BO to BQ, raw cognitive, receptive and expressive Bayley test scores assessed at 24 months of age;Column BR, Composite language metric derived from the expressive and receptive Bayley scores.

 

If you use this dataset please cite the following manucript: Falivene, A.; Cantiani, C.; Dondena, C.; Riboldi, E.M.; Riva, V.; Piazza, C. EEG Functional Connectivity Analysis for the Study of the Brain Maturation in the First Year of Life. Sensors 2024, 24, 4979. All details about subjects, data acquisition and signal processing pipeline are described in the manuscript.
description: This research was funded by the Italian Ministry of Health (Ricerca Finalizzata SG-2019-12369935; Ricerca corrente; "5 per mille" funds for biomedical research).
DOI: 10.5281/zenodo.8423438
title: Stressful crystal histories recorded around melt inclusions in volcanic quartz

description: Magma ascent and eruption are driven by a set of internally and externally generated stresses that act upon the magma. We present microstructural maps around melt inclusions in quartz crystals from six large rhyolitic eruptions using synchrotron Laue X-ray microdiffraction to quantify elastic residual strain and stress. We measure plastic strain using average diffraction peak width and lattice misorientation, highlighting dislocations and subgrain boundaries. Quartz crystals preserve similar and relatively small magnitudes of elastic residual stress (mean 53-135 MPa, median 46-116 MPa) in comparison to the strength of quartz (~10 GPa). However, the distribution of strain in the lattice around inclusions varies between samples. We hypothesize that dislocation and twin systems may be established during compaction of crystal-rich magma, which affects the magnitude and distribution of preserved elastic strains. Given the lack of stress-free haloes around faceted inclusions, we conclude that most residual strain and stress was imparted after inclusion faceting. Fragmentation may be one of the final strain events that superimposes stresses of ~100 MPa across all studied crystals. Overall, volcanic quartz crystals preserve complex, overprinted deformation textures indicating that quartz crystals have prolonged deformation histories throughout storage, fragmentation, and eruption. The data collected using Laue microdiffraction at Lawrence Berkeley National Laboratory Advanced Light Source beamline 12.3.2 are included below as .xlsx files. Data was processed and analyzed using XMAS (Tamura, 2014) and XtalCAMP (Li et al., 2020).
DOI: 10.5281/zenodo.8423439
title: Stressful crystal histories recorded around melt inclusions in volcanic quartz

description: Magma ascent and eruption are driven by a set of internally and externally generated stresses that act upon the magma. We present microstructural maps around melt inclusions in quartz crystals from six large rhyolitic eruptions using synchrotron Laue X-ray microdiffraction to quantify elastic residual strain and stress. We measure plastic strain using average diffraction peak width and lattice misorientation, highlighting dislocations and subgrain boundaries. Quartz crystals preserve similar and relatively small magnitudes of elastic residual stress (mean 53-135 MPa, median 46-116 MPa) in comparison to the strength of quartz (~10 GPa). However, the distribution of strain in the lattice around inclusions varies between samples. We hypothesize that dislocation and twin systems may be established during compaction of crystal-rich magma, which affects the magnitude and distribution of preserved elastic strains. Given the lack of stress-free haloes around faceted inclusions, we conclude that most residual strain and stress was imparted after inclusion faceting. Fragmentation may be one of the final strain events that superimposes stresses of ~100 MPa across all studied crystals. Overall, volcanic quartz crystals preserve complex, overprinted deformation textures indicating that quartz crystals have prolonged deformation histories throughout storage, fragmentation, and eruption. The data collected using Laue microdiffraction at Lawrence Berkeley National Laboratory Advanced Light Source beamline 12.3.2 are included below as .xlsx files. Data was processed and analyzed using XMAS (Tamura, 2014) and XtalCAMP (Li et al., 2020).
DOI: 10.5281/zenodo.11119681
title: Raw data needed to reproduce results of first draft of BinBencher preprint

description: This file contains the raw data needed to reproduce the results in the first draft of the BinBencher preprint.

Files not included are:



The CAMI datasets which are available at https://frl.publisso.de/data/frl:642551

The precise inputs for the original VAMB run used in this paper. However, the VAMB output is saved in this file.
DOI: 10.5281/zenodo.15082317
title: Data for BinBencher

description: Data for the BinBencher paper:



`source.tar.gz` contains the BinBencher source code as an installable Julia package

`inputs.tar.gz` contains an example ground truth reference and a binning.

`raw.tar.gz` includes raw data a needed to reproduce the results in the first draft of the BinBencher preprint. Files not included in `raw.tar.gz` are:








The CAMI datasets which are available at https://frl.publisso.de/data/frl:642551

The precise inputs for the original VAMB run used in this paper. However, the VAMB output is saved in this file.



`paper_binbencher.tar.gz`: Source code used to create plots results and plots for the paper


To reproduce the paper: Extract `paper_binbencher.tar.gz` and `raw.tar.gz`. Run the scripts as they appear in the Git log of `paper_binbencher`.

To run BinBencher on test data: Extract `source.tar.gz`, and follow the README to install the package (if GitHub is down, instead of installing using the URL, use the path to the just-extracted package). Extract `inputs.tar.gz` and follow the instructions in the souce's README to run on the test data.
DOI: 10.5281/zenodo.15081856
title: Word Order, Intonation and Thetic Sentences in Russian

description: The talk given in London at the Linguistic Association of Great Britain conference LAGB 2013 (28-31.08.2013)  is devoted to the derivation of word order and intonation of Russian thetic sentences in the framework of generative-transformational grammar and formal typology. Following statements on the data are made. 1. Modern Russian is a SVO language with scrambling of arguments. VS-word orders are attested both in thetic and categorical sentences and possible with all verb classes – unaccusatives, unergatives and transitives. VS, VSO, VOS-orders can be linked with different types of information structure, so that each word order allows two or more different communicative readings [Kovtunova 1976]. 2. Russian is a language with direct accent marking of communicative constituents (theme, rheme, focus of contrast etc.). The theme in Russian declaratives gets a characteristic accent marking, the so called Intonation Construction 3 (IC-3) – steep rise with a fall on post-tonics (LH*L-L%). The same intonation construction albeit in a higher register and wider range is used for marking Russian yes-no questions [Ode 2003]. 3. There are two subtypes of Russian thetic sentences – context-independent sentences like Vesna prišla (SV)~ Prišla vesna (VS) ‘The spring came’ and context-dependent sentences called ‘sentences with an inherent theme’ in the Russian linguistic tradition, e.g. <Tixo! > Babuška spit ‘<Quiet!> Grandma is asleep’ [Baranov, Kobozeva 1983]. Both subtypes can be realized both with SV and VS-orders. Both subtypes lack an accented theme marked with IC-3 [Yanko 2001]. Russian allows transitive thetic sentences, they mostly fall with the context-dependent subtype, cf. example (1).

Comments.



The generative-transformational framework outlined here is based on the insights of Kovtunova (1976) who proposed the notion of 'linear-intonational paradigm', i. e.  set of sentences sharing the same numeration but exhibiting different word order or information structure and Yanko (2001) who develoved Kovtunova's approach and expanded its coverage to all core types of Russian sentences. Derived word orders and IS in this framework are generated by context-dependent rules called 'linear-accent transformations' (Paducheva 1985).

The formalization of Kovtunova's model in terms of Stablerian formal grammars operating with mildly-context-sensitive rules has been proposed in Zimmerling (2008), cf. the English version Zimmerling (2014) in the 'Related works' section. A detailed analysis of Russian thetic sentences is available in Zimmerling (2016).

Unlike Paducheva (1985) and Yanko (2001; 2008), I put the accent tags before the corresponding word form, not after it. I also use a special tag 'zero subscript' for the deaccented elements.

Mind that with the linear-accent approach, deaccenting of non-clitic words is always interpreted as a by-product of linear-accent transformations.
DOI: 10.5281/zenodo.15081857
title: Word Order, Intonation and Thetic Sentences in Russian

description: The talk given in London at the Linguistic Association of Great Britain conference LAGB 2013 (28-31.08.2013)  is devoted to the derivation of word order and intonation of Russian thetic sentences in the framework of generative-transformational grammar and formal typology. Following statements on the data are made. 1. Modern Russian is a SVO language with scrambling of arguments. VS-word orders are attested both in thetic and categorical sentences and possible with all verb classes – unaccusatives, unergatives and transitives. VS, VSO, VOS-orders can be linked with different types of information structure, so that each word order allows two or more different communicative readings [Kovtunova 1976]. 2. Russian is a language with direct accent marking of communicative constituents (theme, rheme, focus of contrast etc.). The theme in Russian declaratives gets a characteristic accent marking, the so called Intonation Construction 3 (IC-3) – steep rise with a fall on post-tonics (LH*L-L%). The same intonation construction albeit in a higher register and wider range is used for marking Russian yes-no questions [Ode 2003]. 3. There are two subtypes of Russian thetic sentences – context-independent sentences like Vesna prišla (SV)~ Prišla vesna (VS) ‘The spring came’ and context-dependent sentences called ‘sentences with an inherent theme’ in the Russian linguistic tradition, e.g. <Tixo! > Babuška spit ‘<Quiet!> Grandma is asleep’ [Baranov, Kobozeva 1983]. Both subtypes can be realized both with SV and VS-orders. Both subtypes lack an accented theme marked with IC-3 [Yanko 2001]. Russian allows transitive thetic sentences, they mostly fall with the context-dependent subtype, cf. example (1).

Comments.



The generative-transformational framework outlined here is based on the insights of Kovtunova (1976) who proposed the notion of 'linear-intonational paradigm', i. e.  set of sentences sharing the same numeration but exhibiting different word order or information structure and Yanko (2001) who develoved Kovtunova's approach and expanded its coverage to all core types of Russian sentences. Derived word orders and IS in this framework are generated by context-dependent rules called 'linear-accent transformations' (Paducheva 1985).

The formalization of Kovtunova's model in terms of Stablerian formal grammars operating with mildly-context-sensitive rules has been proposed in Zimmerling (2008), cf. the English version Zimmerling (2014) in the 'Related works' section. A detailed analysis of Russian thetic sentences is available in Zimmerling (2016).

Unlike Paducheva (1985) and Yanko (2001; 2008), I put the accent tags before the corresponding word form, not after it. I also use a special tag 'zero subscript' for the deaccented elements.

Mind that with the linear-accent approach, deaccenting of non-clitic words is always interpreted as a by-product of linear-accent transformations.
DOI: 10.15468/dl.vjcv7a
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia prattii Hemsl."
 ]
}

 The dataset includes 212 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001779-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wn3gmb
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Liotrigona madecassa (Saussure, 1890)"
 ]
}

 The dataset includes 157 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001780-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hjt9kc
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Croton gibsonianus Nimmo"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001781-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffj44g
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Betula utilis D.Don"
 ]
}

 The dataset includes 202 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001782-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15082512
title: raw data - Assessing long-term stability of drugs of abuse and pharmaceuticals in post-mortem blood samples
DOI: 10.5281/zenodo.15082513
title: raw data - Assessing long-term stability of drugs of abuse and pharmaceuticals in post-mortem blood samples
DOI: 10.15468/dl.87ay7q
title: Occurrence Download

description: A dataset containing 148229 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Bubo scandiacus (Linnaeus, 1758)",
 "TaxonKey is Acer saccharum Marshall"
 ]
 },
 "HasCoordinate is TRUE",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2020",
 "DecimalLatitude is greater than or equal to 22.339412732063565",
 "DecimalLatitude is less than or equal to 56.47802094128505",
 "DecimalLongitude is greater than or equal to -89.38477198181909",
 "DecimalLongitude is less than or equal to -51.77540380141015",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 148229 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001754-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhhguc
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Croton gibsonianus Nimmo"
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001783-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15055892
title: Eigenstate Correlations in Dual-Unitary Quantum Circuits: Partial Spectral Form Factor

description: This repository contains data for 

"Eigenstate Correlations in Dual-Unitary Quantum Circuits: Partial Spectral Form Factor",Felix Fritzsch, Maximilian F. I. Kieler, and Arnd Bäcker, arXiv:2407.19929 (2024);accepted for publication in Quantum,DOI: https://doi.org/10.48550/arXiv.2407.19929

DU_PSFF_archive.zip contains:

README.txt : the information below

Figures:  3 figures as used in the published article

Data: Data sets used for the creation of the figures,          stored as .npz archive, for documentation see          https://numpy.org/doc/2.2/reference/generated/numpy.savez.html

Notebooks:    Jupyter notebooks for:                      1) Loading the above data and plotting them using matplotlib                         (note, that this does not reproduce the plots of the published article,                          the later are generated with pyx, see https://pyx-project.org/)                      2) Computing the PSFF in the thermodynamic limit                      3) Computing the PSFF for finite system size                         (the latter two are cleaned up and simpliefied versions of the code used                          to produce the data for the publication)
DOI: 10.15468/dl.2fub6a
title: Occurrence Download

description: A dataset containing 52056171 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is India"
 ]
}

 The dataset includes 52056171 records from 3125 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001736-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive123405.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive123405.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0115104.10fu
title: SH0115104.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.