cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3638156_d8
title: Additional file 1: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Genetic linkage map of an intraspecific RIL population. (ZIP 7480 kb)
DOI: 10.6084/m9.figshare.c.3638156_d6
title: Additional file 5: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Summary of meta-clusters on a consensus map. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3638156_d5
title: Additional file 3: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Position and markers details of identified QTLs for fiber quality traits in an intraspecific RIL. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3638156_d3
title: Additional file 4: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Details of QTL clusters on the 0â  153 genetic map of a RIL. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3638156_d4
title: Additional file 8: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Details of the primers used in the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3638156_d2
title: Additional file 2: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Fiber QTLs identified in an intraspecific RIL population and their position. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3638156_d1
title: Additional file 6: of Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

description: Identified QTLs for fiber traits in a RIL and comparison with the findings of previous reports. (XLSX 46 kb)
DOI: 10.6084/m9.figshare.c.3637529_d1
title: Additional file 1: of The Klotho gene G-395A polymorphism and metabolic syndrome in very elderly people

description: the SNP data of the study population. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3637550_d1
title: Additional file 1: Table S1. of VennDiagramWeb: a web application for the generation of highly customizable Venn and Euler diagrams

description: Sample data for the user to upload. Hypergeometric testing was conducted on samples of rat and mouse liver tissue to identify similar transcriptomic profiles [14]. (XLS 189Â kb)
DOI: 10.6084/m9.figshare.c.3636890_d1
title: MOESM1 of Designing and conducting a cluster-randomized trial of ICU admission for the elderly patients: the ICE-CUB 2 study

description: Additional file 1. Members of the ICE-CUB 2 study network.
DOI: 10.15468/dl.ywqd27
title: Occurrence Download

description: A dataset containing 2012 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Caracterización morfométrica del bagre rayado para la cuenca del Magdalena"
 ]
}

 The dataset includes 2012 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032620-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636617_d1
title: Additional file 1: Supplement T1. of Development of a D genome specific marker resource for diploid and hexaploid wheat

description: Comparison of NimbleGen mapping data with the previous wheat EST deletion bin map. (XLSX 20Â kb)
DOI: 10.15468/dl.8ejyqy
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoreo satelital de condor andino (Vultur gryphus) en Ecuador"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032614-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636584_d11
title: Additional file 2: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: Genomic coordinates of lncRNAs. Data include genomic coordinates of the 2,632 lncRNAs with start, end coord, and IDs. Also consists of multiple sheets with additional information on mutation hotspots, genomic coordinates, and IDs for the 45 highly expressed lncRNAs and the divergent lncRNAs. (XLSX 896 kb)
DOI: 10.6084/m9.figshare.c.3636584_d12
title: Additional file 7: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: List of protein-coding genes correlated with lncRNAs. Each protein-coding gene co-expressed with a novel lncRNA, with spearman correlation value, P value, and adjusted P value, respectively. The list includes most significantly positively correlated genes per lncRNA. (XLSX 23304 kb)
DOI: 10.6084/m9.figshare.c.3636584_d8
title: Additional file 8: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: lncRNAs correlated with protein-coding genes and functional pathways. List of lncRNAs significantly co-expressed with protein-coding genes and corresponding enriched functional pathways based on the subset of the co-expressed genes. (XLS 286 kb)
DOI: 10.6084/m9.figshare.c.3636584_d9
title: Additional file 1: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: List of cell lines. Data include list of DLBCL cell line names used in the analysis. (XLSX 38 kb)
DOI: 10.15468/dl.3ry2ts
title: Occurrence Download

description: A dataset containing 1649 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Woodsia mollis (Kaulf.) J.Sm."
 ]
}

 The dataset includes 1649 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032621-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3636584_d4
title: Additional file 14: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: lncRNAs overlapping and correlated with known datasets. Data showing results for each lncRNA analyzed. Information included for each lncRNA, showing number of isoforms, lncRNA present in cell lines, normal B cell samples, near enriched ChIPSeq peaks, DLBCL super enhancers, PacBio data. Also, lncRNAs significantly co-expressed with known DLBCL target genes such as EZH2, BCL6. (XLSX 170 kb)
DOI: 10.6084/m9.figshare.c.3636584_d1
title: Additional file 9: of Transcriptome sequencing reveals thousands of novel long non-coding RNAs in B cell lymphoma

description: DLBCL sample subtype classification. Data showing the classification of the 104 primary DLBCL subtypes as ABC or GCB. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3636575_d2
title: Additional file 2: Table S2. of Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish

description: Results of differential expression analysis for the gonad (blue: male-biased contigs, red: female-biased contigs).
DOI: 10.6084/m9.figshare.c.3636575_d3
title: Additional file 3: Table S3. of Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish

description: Results of differential expression analysis for the brain (blue: male-biased contigs, red: female-biased contigs).
DOI: 10.6084/m9.figshare.c.3636575_d1
title: Additional file 1: Table S1. of Large-scale transcriptome sequencing reveals novel expression patterns for key sex-related genes in a sex-changing fish

description: Ensembl zebrafish gene IDs of sex-biased contigs in the gonad for GO and pathway enrichment analysis in DAVID.
DOI: 10.6084/m9.figshare.c.3636560_d4
title: Additional file 2: of High-throughput sequencing technology to reveal the composition and function of cecal microbiota in Dagu chicken

description: Comparisons for abundance between the 12-w OD and 12-w ID groups at the genus level. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3636032_d2
title: Additional file 2: Table S2. of Discovering gene expression signatures responding to tyrosine kinase inhibitor treatment in chronic myeloid leukemia

description: Lists of functional annotation terms of differentially expressed genes of each dataset (GSE14671, GSE2535, and GSE33224). (XLS 143Â kb)
DOI: 10.6084/m9.figshare.c.3636032_d1
title: Additional file 1: Table S1. of Discovering gene expression signatures responding to tyrosine kinase inhibitor treatment in chronic myeloid leukemia

description: Lists of differentially expressed genes of each dataset (GSE1467, GSE2535, and GSE33224). (XLS 115Â kb)
DOI: 10.6084/m9.figshare.c.3636023_d10
title: Additional file 7: of Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation

description: Differentially expressed O. unilateralis s.l. genes. Tables displaying all O. unilateralis s.l. genes, including their expression levels and annotation, that were found to be differentially expressed during manipulated biting behavior in comparison to baseline gene expression in fungal cultures (sheets 2 and 3), after manipulated biting behavior in comparison to baseline gene expression (sheets 4 and 5), and during manipulated biting behavior versus death after manipulated biting behavior (sheets 6 and 7). (XLSX 891Â kb)
DOI: 10.6084/m9.figshare.c.3636023_d7
title: Additional file 8: of Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation

description: O. unilateralis s.l. genes uniquely up- or down regulated during manipulated biting behavior. Tables displaying all O. unilateralis s.l. genes, including their expression levels and annotation that were found to be up-regulated during manipulated biting behavior followed by being down-regulated again after the biting event had taken place (sheet 2), and that were found to be down-regulated during manipulated biting behavior followed by being up-regulated again after the biting event had taken place (sheet 3). (XLSX 232Â kb)
DOI: 10.6084/m9.figshare.c.3636023_d5
title: Additional file 10: of Gene expression during zombie ant biting behavior reflects the complexity underlying fungal parasitic behavioral manipulation

description: Differentially expressed C. castaneus genes. Tables displaying all C. castaneus genes, including their expression levels and annotation, that were found to be differentially expressed in healthy ant heads at 2 different time points during the day; 10:00 h and 14:00 h (sheets 2 and 3), during manipulated biting behavior in comparison to healthy ant heads at 10:00 h (sheets 4 and 5), after manipulated biting behavior in comparison to healthy ant heads at 14:00 h (sheets 6 and 7), and during manipulated biting behavior versus death after manipulated biting behavior (sheets 8 and 9). (XLSX 339 kb)
DOI: 10.6084/m9.figshare.c.3636008_d5
title: Additional file 2: Table S5. of Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

description: Discrete Bayes Factors from SPREAD. Locations are denoted with two letter codes (Additional file 5: Table S3). The upper half of the matrix shows the mean (standard deviation) for the discrete Bayes Factor calculated for the 12 discrete trait models. The lower half of the matrix shows how many times a linkage had a Bayes Factor greater than 3.0. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3636008_d4
title: Additional file 5: Table S3. of Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

description: List of location codes used for phylogeographic analysis. A. List of two letter location codes. B. List of countries conflated into the WH, PC and AF location codes. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3636008_d2
title: Additional file 3: Table S1. of Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

description: List of primers used in amplification and sequencing. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3636008_d3
title: Additional file 1: Table S4. of Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

description: Location probabilities for the Pakistan clade. The top four location probabilities for each of the 12 discrete trait runs are listed by the two letter location code with the highest probability on the left. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3636008_d1
title: Additional file 4: Table S2. of Introduction and evolution of dengue virus type 2 in Pakistan: a phylogeographic analysis

description: List of complete sequences used in the analysis. List of sequences downloaded from GenBank/EMBL/DDBJ. Sequences are by their accession numbers, country of origin, location code and year of collection. Full length sequences used in phylogeography analysis are written in bold. (XLSX 15 kb)
DOI: 10.15468/dl.6zbm2a
title: Occurrence Download

description: A dataset containing 218119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Arthurdendyus triangulatus (Dendy, 1895), Cabomba caroliniana A.Gray, Callosciurus finlaysonii (Horsfield, 1823), Cherax destructor Clark, 1936, Corvus splendens Vieillot, 1817, Crassula helmsii (Kirk) Cockayne, Elodea densa (Planch.) Casp., Eriocheir sinensis H.Milne Edwards, 1853, Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Gambusia affinis (Baird & Girard, 1853), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Heracleum pubescens (Hoffm.) M.Bieb., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Lepomis gibbosus (Linnaeus, 1758), Limnoperna fortunei (Dunker, 1857), Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Morone americana (Gmelin, 1789), Muntiacus reevesi (Ogilby, 1839), Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Pacifastacus leniusculus (Dana, 1852), Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Pseudorasbora parva (Temminck & Schlegel, 1846), Pycnonotus cafer (Linnaeus, 1766), Saururus cernuus L., Sciurus carolinensis Gmelin, 1788, Sciurus niger Linnaeus, 1758, Solenopsis invicta Buren, 1972, Solenopsis richteri Forel, 1909, Threskiornis aethiopicus (Latham, 1790), Vespa velutina Lepeletier, 1836, Zizania latifolia (Griseb.) Hance ex F.Muell.)",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 218119 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032604-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635378_d12
title: Additional file 5: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Chain files, GFF mapping and transcript status of OGS2 on Nvit_2.1 genome assembly. (XLS 17233Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d11
title: Additional file 4: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: OrthoDB6 BUSCO (Benchmarking Universal Single Copy Orthologs) genes present in multiple copies in OGS2. (XLS 51Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d10
title: Additional file 9: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Protein alignment of the OG EOG6R4ZDK (hymenopteran histone H3). Clipped to include only residues shared between all genes. (TXT 13Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d9
title: Additional file 1: Figure S1. of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Expression values relative to gene structures for RNA-Seq (Reads) and genome tiling path microarrays (Tile) for species Nasonia (purple, this project), Drosophila (red, blue, [74]) and Daphnia (green, [107]). Annotated gene near-exon spans are scored per base for average expression scores from the data sets, and relative expression plotted with respect to gene transcript start (first exon), stop (last exon), and inner exon start, stop positions. Both methods (genome tiling and RNA-Seq) have abrupt expression strength changes at exon boundaries, on average, indicating their value in modeling gene structure positions. Expression scores are read-coverage for RNA-Seq, and log-normalized intensity for tiling array, as described in the Methods section. Figure S2. Gene modeling example with tile expression data, including gene evidence (upper tracks with tiling, introns, proteins), tiling TAR-exon to Exonerate models (middle), and gene predictions from tile TAR hints (lower), on genome map. The lower tracks have excessive false UTR spans attached to gene models, primarily due to tiling expression that lacks gene start/stop and intron splice joining signals. These false UTR spans are supported by expression evidence, but as a combination of alternate exons, separate gene loci, and non-coding expression. Intermediate tracks (Exonerate models) often match gene structures from other methods, but have a high proportion of unsupported exon extensions as for lower track. Figure S3. Gene join error example. A mistaken gene model from honey bee (tan, lower, LOC552483) is transferred to Nasonia in NCBI RefSeq models (dark orange, middle), merging a ribosomal protein (right) and Ankyrin repeat protein (left). EvidentialGene models (yellow, top) did not contain this mistake, due to the combination of RNA-Seq assemblies (purple, bottom) that are un-joined (but could be parts of one gene), the lack of intron joining evidence, and the orthology assessment metrics that distinguish gene joins from true complete genes. NCBI Refseq models for both Apis (new LOC102654426 and mRpL52 in NCBI Apis rel. 102) and Nasonia have been updated to correct this join error. Figure S4. Log counts of methylated and unmethylated genes in different classes of expression support. Grey bars indicate genes with no known methylation status. (ZIP 938Â kb)
DOI: 10.15468/dl.8vjtqn
title: Occurrence Download

description: A dataset containing 826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.29018 -16.35349,-73.2893 -16.41185,-73.16728 -16.43086,-73.0625 -16.49453,-73.051 -16.48524,-73.06869 -16.43131,-73.10273 -16.3672,-73.21414 -16.35128,-73.29018 -16.35349))",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 826 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032622-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635378_d6
title: Additional file 3: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: OrthoDB6 BUSCO (Benchmarking Universal Single Copy Orthologs) genes missing from OGS2. (XLS 1367Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d7
title: Additional file 6: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Table of OGS2 gene transcripts equivalences to OGS1 and NCBI-101 gene sets, using the CDS-exon locations on the genome assembly. “NCBI101geneID” and “OGS1geneID” include equivalence value as percent equal to CDS.EXON. For example: Nasvi2EG000002t1 nasvn14g1803t1/99.70 is 99 % CDS equal, 70 % exon equal; NV10001-RA/74.89 is 74 % CDS equal, 89 % exon equal. The “NCBI101geneID” is the local ID “gene1803” from the NCBI GFF gene table, adding “nasvn14g” prefix and alternate transcript suffix “t1,t2,..”, with associated column of public “NCBI101transcriptID” (XM_ or NM_). “Genome21loc” is the gene span location on Nvit_2.1 scaffold assembly, “Genome1loc” is the gene span location on Nvit_1.0 scaffold assembly (most Nvit_2.1 and 1.0 are equivalent). “NCBI101also” and “OGS1also” are additional gene transcripts with partial equivalence to the OGS2 gene. Nonequivalence values: “na” for “NCBI101geneID”, “novid” for “OGS1geneID”. “WaspAtlasNCBI101” lists NCBI-101 equivalent genes provided by [40]. Disagreements are marked by “*”. These appear to be UTR-exon or gene-span overlaps, rather than the CDS-exon overlap used in this table equivalence. (XLSX 2889 kb)
DOI: 10.6084/m9.figshare.c.3635378_d5
title: Additional file 13: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Model selection table for models comprising different combinations of factors with a putative role in characterizing genes with and without annotated isoforms. (XLS 59Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d3
title: Additional file 11: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Genes with more than 10 isoforms present in OGS2. (XLS 48Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d4
title: Additional file 7: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: OGS2 genes whose ortholog groups are characterized by lineage-specific expansions or contractions. (XLS 3711Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d2
title: Additional file 8: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Protein evolutionary distances of OGS2.0 genes compared to ant and bee lineages, residuals distances after model fitting and fast/slow evolving categorization at the 5th and 20th quantile threshold. (XLS 2790Â kb)
DOI: 10.15468/dl.6zw2xm
title: Occurrence Download

description: A dataset containing 1075605 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1075605 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032603-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635063_d6
title: Additional file 3: Figure S1. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

description: Genetic linkage maps generated using 297 hybrid seedlings derived from ‘Jonathan’ × ‘Golden Delicious’. The 17 linkage groups represented the 17 chromosomes of Malus × domestica. The common markers between each parental map and consensus map were showed by the read lines. LG: Linkage groups; J: Jonathan; G: Golden Delicious. (RAR 19136 kb)
DOI: 10.6084/m9.figshare.c.3635063_d3
title: Additional file 6: Table S4. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

description: Candidate genes searched from the regions of five significant QTLs (interval