cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.japx8v
title: Occurrence Download

description: A dataset containing 592 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthostracion polygonius Poey, 1876",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 592 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038109-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3690587_d2.v1
title: Additional file 11: of MicroRNA miR-29 controls a compensatory response to limit neuronal iron accumulation during adult life and aging

description: Supporting Data: Raw quantitative PCR data relative to Figs.Â 1b and 6câ  e, g, h. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3690587_d2
title: Additional file 11: of MicroRNA miR-29 controls a compensatory response to limit neuronal iron accumulation during adult life and aging

description: Supporting Data: Raw quantitative PCR data relative to Figs.Â 1b and 6câ  e, g, h. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3690601_d1.v1
title: Additional file 4: Table S3. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: SMK-MSC 1.25FC. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3690601_d1
title: Additional file 4: Table S3. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: SMK-MSC 1.25FC. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3690579_d8.v1
title: Additional file 16: of Anopheline salivary protein genes and gene families: an evolutionary overview after the whole genome sequence of sixteen Anopheles species

description: Divergence of orthologous salivary proteins among anophelines and in the subgenera Cellia, Anopheles and Nyssorhynchus. (Worksheet 1_salivary genes divergence) Protein name, corresponding An. gambiae accession number, size in amino acids, location on the An. gambiae chromosomes and average percent aminoacid identity ± standard deviation are reported. N, number of sequences; S, number of variable sites; d, number of amino acid substitution per site (average over all sequence pairs); dS, number of synonimous substitutions per synonimous site; dN, number of nonsynonimous substitutions per nonsynonimous site; Pi, nucleotide diversity per site; SE, standard error; SD, standard deviation. Average identities ± standard deviations were calculated for each protein from the pairwise comparisons between the different species. Only An. gambiae s.s. was included in the analysis as representative of the An. gambiae species complex. The grey shading indicates absence of the gene in the corresponding subgenus. NA, not applicable. Salivary proteins with percentage of identity below 50% (orange), between 50 and 60% (green), 60 and 70% (yellow) and above 90% (light blue) are highlighted. Identities in 12 orthologous housekeeping proteins are shown for comparison. EIF1A, Eukaryotic Initiation Factor 1A; G6PD, glucose-6-phosphate 1-dehydrogenase; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; GSTT1, glutathione S-transferase theta class 1; rpL5, ribosomal protein L5; rpS7, ribosomal protein S7; SDH, succinate dehydrogenase. (Worksheet 2_sorted by dN/dS) Salivary protein genes were sorted by dN/dS ratio. The thirteen with the higher dN/dS ratio and including all the seven SG1 family members are boxed. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3690579_d8
title: Additional file 16: of Anopheline salivary protein genes and gene families: an evolutionary overview after the whole genome sequence of sixteen Anopheles species

description: Divergence of orthologous salivary proteins among anophelines and in the subgenera Cellia, Anopheles and Nyssorhynchus. (Worksheet 1_salivary genes divergence) Protein name, corresponding An. gambiae accession number, size in amino acids, location on the An. gambiae chromosomes and average percent aminoacid identity ± standard deviation are reported. N, number of sequences; S, number of variable sites; d, number of amino acid substitution per site (average over all sequence pairs); dS, number of synonimous substitutions per synonimous site; dN, number of nonsynonimous substitutions per nonsynonimous site; Pi, nucleotide diversity per site; SE, standard error; SD, standard deviation. Average identities ± standard deviations were calculated for each protein from the pairwise comparisons between the different species. Only An. gambiae s.s. was included in the analysis as representative of the An. gambiae species complex. The grey shading indicates absence of the gene in the corresponding subgenus. NA, not applicable. Salivary proteins with percentage of identity below 50% (orange), between 50 and 60% (green), 60 and 70% (yellow) and above 90% (light blue) are highlighted. Identities in 12 orthologous housekeeping proteins are shown for comparison. EIF1A, Eukaryotic Initiation Factor 1A; G6PD, glucose-6-phosphate 1-dehydrogenase; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; GSTT1, glutathione S-transferase theta class 1; rpL5, ribosomal protein L5; rpS7, ribosomal protein S7; SDH, succinate dehydrogenase. (Worksheet 2_sorted by dN/dS) Salivary protein genes were sorted by dN/dS ratio. The thirteen with the higher dN/dS ratio and including all the seven SG1 family members are boxed. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3690601_d2.v1
title: Additional file 2: Table S1. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: qRTPCR probes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3690601_d2
title: Additional file 2: Table S1. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: qRTPCR probes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3690601_d5
title: Additional file 3: Table S2. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: SMK-NTC 1.25FC. (XLS 33 kb)
DOI: 10.25345/c5vq2sp17
title: MassIVE MSV000096679 - FeNP Titration Experiment_12172024
title: Fe nanoparticles are effective in enriching siderophore and other secondary metabolites present in pseudomonas fluorescence
DOI: 10.6084/m9.figshare.c.3690601_d6.v1
title: Additional file 5: Table S4. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: Functional Analysis SMK-MSC. (XLSX 10 kB)
DOI: 10.6084/m9.figshare.c.3690601_d6
title: Additional file 5: Table S4. of Gene expression profiles associated with cigarette smoking and moist snuff consumption

description: Functional Analysis SMK-MSC. (XLSX 10 kB)
DOI: 10.6084/m9.figshare.c.3690587_d6.v1
title: Additional file 5: of MicroRNA miR-29 controls a compensatory response to limit neuronal iron accumulation during adult life and aging

description: Complete list of genes coherently or incoherently regulated by aging and sponge-29. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3690579_d16.v1
title: Additional file 2: of Anopheline salivary protein genes and gene families: an evolutionary overview after the whole genome sequence of sixteen Anopheles species

description: Hyperlinked spreadsheet carrying 824 full-length salivary proteins from 19 anopheline species. Nucleotide coding sequences, peptide sequences, accession numbers (if available), status (novel or annotation needing correction) and several additional informations (protein length, molecular weight, pI, presence of secretory signal and potential glycosilation sites, results of blast searches, etc.) are reported. (XLSX 938Â kb)
DOI: 10.6084/m9.figshare.c.3690587_d6
title: Additional file 5: of MicroRNA miR-29 controls a compensatory response to limit neuronal iron accumulation during adult life and aging

description: Complete list of genes coherently or incoherently regulated by aging and sponge-29. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3690579_d16
title: Additional file 2: of Anopheline salivary protein genes and gene families: an evolutionary overview after the whole genome sequence of sixteen Anopheles species

description: Hyperlinked spreadsheet carrying 824 full-length salivary proteins from 19 anopheline species. Nucleotide coding sequences, peptide sequences, accession numbers (if available), status (novel or annotation needing correction) and several additional informations (protein length, molecular weight, pI, presence of secretory signal and potential glycosilation sites, results of blast searches, etc.) are reported. (XLSX 938Â kb)
DOI: 10.6084/m9.figshare.c.3690615_d1.v1
title: Additional file 1: of Cardiorenal Anemia Syndrome and Survival among Heart Failure Patients in Tanzania: A Prospective Cohort Study

description: CRAS study Tanzania - dataset. (XLSX 155 kb)
DOI: 10.15468/dl.ezm3bf
title: Occurrence Download

description: A dataset containing 1064 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthostracion quadricornis (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1064 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038110-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3690625_d1
title: Additional file 1: of Dynamic presenilin 1 and synaptotagmin 1 interaction modulates exocytosis and amyloid β production

description: Fluorescence lifetime and corresponding FRET efficiency values recorded in the FLIM assays. The table summarizes the mean ± SEM fluorescence lifetimes and corresponding, calculated FRET efficiencies for the all presented FLIM analyses. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3690635_d1.v1
title: Additional file 2: of A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

description: An R-script implementing EpiDISH with either robust partial correlations (RPC), CIBERSORT (CBS) or Constrained Projection (CP). (R 5 kb)
DOI: 10.6084/m9.figshare.c.3690623_d3.v1
title: Additional file 1: Table S1. of 
                     De novo mutational profile in RB1 clarified using a mutation rate modeling algorithm

description: All de novo germline variants in RB1 gene of patients with RB. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S2. All ExAC variants in RB1 gene that were considered in our analysis. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S3. All Nonsense variants in RB1 gene from Onadim and Houdayer groups. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S4. Comparison of observed mutations and the simulated frequency of nonsense changes per exon, to find differential pathogenicity within nonsense mutations. Analysis was performed on data from Onadim and Houdayer groups. Table S5. Comparison of observed mutations and the simulated frequency of nonsense changes to find differential pathogenicity within nonsense mutations. Data shown for all amino acids and two arginine codons (99% CI) which can change to a stop codon. Analysis was performed on data from Onadim and Houdayer groups. Table S6. Polyphen predictions on the de novo germline missense mutations or some potential variants near codon 661 in RB1 gene. “Polyphen2_format” is the variant format accepted by the Polyphen2 tool. “Polyphen_prediction” is the result of Polyphen2 on the missense variant. Table S7. Comparison between observed mutations and the simulated frequency of missense changes at amino acids and codons in exon 20, to find localized pathogenicity within missense mutations. Only the significant results are reported here. Table S8. Genomic territory of RB1 gene analyzed in our study. “Position Start” is the start position of the entry as per GENBANK database. “Position End” is the end positon of the entry as per GENBANK database. “Annotation” is the description of the entry. Possible keywords are exon or donor/acceptor region in essential splice or nonessential intronic region. “Exon” corresponds to exon number of the entry. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3690623_d3
title: Additional file 1: Table S1. of 
                     De novo mutational profile in RB1 clarified using a mutation rate modeling algorithm

description: All de novo germline variants in RB1 gene of patients with RB. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S2. All ExAC variants in RB1 gene that were considered in our analysis. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S3. All Nonsense variants in RB1 gene from Onadim and Houdayer groups. “gDNA position” is the nucleotide position in the GENBANK accession number L11910 of the gene. Table S4. Comparison of observed mutations and the simulated frequency of nonsense changes per exon, to find differential pathogenicity within nonsense mutations. Analysis was performed on data from Onadim and Houdayer groups. Table S5. Comparison of observed mutations and the simulated frequency of nonsense changes to find differential pathogenicity within nonsense mutations. Data shown for all amino acids and two arginine codons (99% CI) which can change to a stop codon. Analysis was performed on data from Onadim and Houdayer groups. Table S6. Polyphen predictions on the de novo germline missense mutations or some potential variants near codon 661 in RB1 gene. “Polyphen2_format” is the variant format accepted by the Polyphen2 tool. “Polyphen_prediction” is the result of Polyphen2 on the missense variant. Table S7. Comparison between observed mutations and the simulated frequency of missense changes at amino acids and codons in exon 20, to find localized pathogenicity within missense mutations. Only the significant results are reported here. Table S8. Genomic territory of RB1 gene analyzed in our study. “Position Start” is the start position of the entry as per GENBANK database. “Position End” is the end positon of the entry as per GENBANK database. “Annotation” is the description of the entry. Possible keywords are exon or donor/acceptor region in essential splice or nonessential intronic region. “Exon” corresponds to exon number of the entry. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3690635_d1
title: Additional file 2: of A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

description: An R-script implementing EpiDISH with either robust partial correlations (RPC), CIBERSORT (CBS) or Constrained Projection (CP). (R 5 kb)
DOI: 10.6084/m9.figshare.c.3690643_d3
title: Additional file 1: Table S1. of Rapid eradication of colon carcinoma by Clostridium perfringens Enterotoxin suicidal gene therapy

description: List of patient derived colon carcinoma xenografts (PDX) and their primary origin. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3690657_d1
title: MOESM2 of Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13

description: Additional file 2: Table S2. Results for calibration of FTIR-spectra against GC-FID reference data, correlations between each FA and total fat percentage, and estimates of variance components with standard errors.
DOI: 10.6084/m9.figshare.c.3690657_d1.v1
title: MOESM2 of Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13

description: Additional file 2: Table S2. Results for calibration of FTIR-spectra against GC-FID reference data, correlations between each FA and total fat percentage, and estimates of variance components with standard errors.
DOI: 10.6084/m9.figshare.c.3690659_d1.v1
title: Additional file 1: of Copeptin for risk stratification in non-traumatic headache in the emergency setting: a prospective multicenter observational cohort study

description: Spreadsheet of study data. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3690659_d1
title: Additional file 1: of Copeptin for risk stratification in non-traumatic headache in the emergency setting: a prospective multicenter observational cohort study

description: Spreadsheet of study data. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3690655_d2
title: Additional file 3: Table S2. of Transcriptional and physiological analyses of Fe deficiency response in maize reveal the presence of Strategy I components and Fe/P interactions

description: Differentially expressed transcripts resulted by the comparison of root transcriptional profiles of Fe-deficient plants with root transcriptional profile of Fe-sufficient ones (−Fe vs + Fe). (XLSX 160 kb)
DOI: 10.6084/m9.figshare.c.3690669_d1
title: Additional file 7: of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: Complete 18S rRNA sequences of rhizarian exLh and Iotanema spirale (re)assembled from RNAseq reads. (TXT 7 kb)
DOI: 10.6084/m9.figshare.c.3690669_d3.v1
title: Additional file 3: Table S2. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: List of analyzed transcripts, single-gene trees, and hyperconserved regions for Iotanema spirale. (XLSX 787 kb)
DOI: 10.6084/m9.figshare.c.3690657_d5
title: MOESM3 of Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13

description: Additional file 3: Table S3. GWAS results.
DOI: 10.6084/m9.figshare.c.3690657_d5.v1
title: MOESM3 of Genome-wide association mapping for milk fat composition and fine mapping of a QTL for de novo synthesis of milk fatty acids on bovine chromosome 13

description: Additional file 3: Table S3. GWAS results.
DOI: 10.6084/m9.figshare.c.3690669_d3
title: Additional file 3: Table S2. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: List of analyzed transcripts, single-gene trees, and hyperconserved regions for Iotanema spirale. (XLSX 787 kb)
DOI: 10.6084/m9.figshare.c.3690669_d5.v1
title: Additional file 5: Table S4. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: tRNA genes and the number of their paralogs in selected eukaryotic genomes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3690669_d5
title: Additional file 5: Table S4. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: tRNA genes and the number of their paralogs in selected eukaryotic genomes. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3690669_d6.v1
title: Additional file 4: Table S3. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: Stop codons in available transcripts of Guttulinopsis vulgaris. (XLSX 112 kb)
DOI: 10.15468/dl.hzehty
title: Occurrence Download

description: A dataset containing 1402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthurus chirurgus (Bloch, 1787)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 1402 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038111-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3690669_d6
title: Additional file 4: Table S3. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: Stop codons in available transcripts of Guttulinopsis vulgaris. (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3690669_d7.v1
title: Additional file 1: Table S1. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: List of detected genes, single-gene trees, and hyperconserved regions for the rhizarian exLh. (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3690669_d7
title: Additional file 1: Table S1. of Nuclear genetic codes with a different meaning of the UAG and the UAA codon

description: List of detected genes, single-gene trees, and hyperconserved regions for the rhizarian exLh. (XLSX 682 kb)
DOI: 10.6084/m9.figshare.c.3691621_d2
title: MOESM1 of Rapid evolution of genetic and phenotypic divergence in Atlantic salmon following the colonisation of two new branches of a watercourse

description: Additional file 1: Table S1. Information on scale samples for length, mass, sex, smolt age, and sea age of adult Atlantic salmon captured in different sections of the Vefsna watershed during the period 1969 to 1981.
DOI: 10.6084/m9.figshare.c.3691621_d3.v1
title: MOESM3 of Rapid evolution of genetic and phenotypic divergence in Atlantic salmon following the colonisation of two new branches of a watercourse

description: Additional file 3: Table S3. Genotype data for 96 SNPs in Atlantic salmon from the Vefsna watershed.
DOI: 10.6084/m9.figshare.c.3691621_d3
title: MOESM3 of Rapid evolution of genetic and phenotypic divergence in Atlantic salmon following the colonisation of two new branches of a watercourse

description: Additional file 3: Table S3. Genotype data for 96 SNPs in Atlantic salmon from the Vefsna watershed.
DOI: 10.6084/m9.figshare.c.3691633_d3.v1
title: Additional file 1: Table S1. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: Summary of read alignments to the reference transcripts. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3691633_d3
title: Additional file 1: Table S1. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: Summary of read alignments to the reference transcripts. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.c.3691612_d4.v1
title: Additional file 5: Table S3. of Effect of light and prey availability on gene expression of the mixotrophic chrysophyte, Ochromonas sp.

description: Tables listing phototrophy-related genes (datasheet 1), phagotrophy-related genes (datasheet 2), and genes coding for glycoside hydrolases and lysozymes (datasheet 3). Blast2GO was used to obtained the GO or EC number(s) for each gene. (XLSX 49 kb)
DOI: 10.6084/m9.figshare.c.3691648_d4
title: Additional file 6: Table S2. of The genetic architecture of low-temperature adaptation in the wine yeast Saccharomyces cerevisiae

description: List of genes used in the RH analysis with the BY4741 strain that are present in the subtelomeric regions and are not essential. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3691633_d7.v1
title: Additional file 12: Table S5. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: Primer list used for qPCR. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3691633_d7
title: Additional file 12: Table S5. of The transcriptional landscape of basidiosporogenesis in mature Pisolithus microcarpus basidiocarp

description: Primer list used for qPCR. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3691660_d2.v1
title: Additional file 3: Table S2. of Functional studies of Drosophila zinc transporters reveal the mechanism for zinc excretion in Malpighian tubules

description: Original data for RT-PCR and metal content analyses. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3691660_d2
title: Additional file 3: Table S2. of Functional studies of Drosophila zinc transporters reveal the mechanism for zinc excretion in Malpighian tubules

description: Original data for RT-PCR and metal content analyses. (XLSX 13 kb)