cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25373/ctsnet.7674278
title: Nontraumatic Chylothorax in the Setting of Superior Vena Cava Stenosis

description: <strong>Introduction</strong>Chylothorax is a rare but potentially morbid complication following thoracic surgery. Nontraumatic chylothorax is even less common and typically is due to malignancy, congenital or idiopathic disorders of the lymphatic system, systemic diseases, and infection [1]. Here, the authors present a case of nontraumatic chylothorax due to central venous stenosis.<b>Case Presentation</b><br>A 57-year-old man with a history of renal failure and previous renal transplantation complicated by rejection requiring dialysis presented to the emergency room with the acute onset of dyspnea, nonproductive cough, and an inability to lay flat. He had a history of prior left tunneled internal jugular dialysis catheter placement and left upper extremity dialysis fistula, which had previously required multiple fistulagrams for prolonged bleeding and elevated venous pressures. During examination, his chest x-ray showed a large left pleural effusion and he underwent thoracentesis by the emergency medicine team with evacuation of 2 L of turbid fluid.<br>Given his chronic immunosuppression, he was admitted by internal medicine for initiation of intravenous (IV) antibiotics. Thoracic surgery, transplant infectious disease, and nephrology were consulted following admission. He underwent an echocardiogram, which did not demonstrate congestive heart failure. A computed tomography (CT) scan demonstrated right internal jugular occlusion, superior vena cava (SVC) stenosis, prominent thoracic venous collaterals, and cervical and mediastinal lymphadenopathy (Figures 1 and 2). His pleural fluid cytology and cultures were negative, but testing indicated the presence of chylomicrons and his triglyceride level was 1154 mg/dL, which was consistent with a chylothorax.<b><br></b>His IV antibiotics were discontinued, and he was placed on a medium chain triglyceride diet with octreotide three times daily. A cervical lymph node biopsy was negative for lymphoma, and he was monitored closely as an outpatient for recurrence. He continued to reaccumulate chylous fluid despite dietary modifications and required additional thoracenteses.<br>Subsequently, the decision was made to proceed with a venogram and possible SVC stent placement. If this were unsuccessful, he would undergo thoracoscopic thoracic duct ligation. He was found to have hemodynamically significant stenosis of the superior SVC resulting in a 21 mm Hg pressure gradient between the left innominate vein and central SVC. He underwent successful stent placement with decompression of previously visualized left thoracic venous collaterals (Figure 3). After stent placement the pressure gradient was reduced to 1 mm Hg. The patient subsequently has remained stable, with resolution of his chylothorax without the need for further interventions.<br>Learn more: https://www.ctsnet.org/article/nontraumatic-chylothorax-setting-superior-vena-cava-stenosis
DOI: 10.7284/107893
title: GNSS (Global Navigation Satellite System) data collected during research cruise BOLT02MV using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25373/ctsnet.7674278.v1
title: Nontraumatic Chylothorax in the Setting of Superior Vena Cava Stenosis

description: <strong>Introduction</strong>Chylothorax is a rare but potentially morbid complication following thoracic surgery. Nontraumatic chylothorax is even less common and typically is due to malignancy, congenital or idiopathic disorders of the lymphatic system, systemic diseases, and infection [1]. Here, the authors present a case of nontraumatic chylothorax due to central venous stenosis.<b>Case Presentation</b><br>A 57-year-old man with a history of renal failure and previous renal transplantation complicated by rejection requiring dialysis presented to the emergency room with the acute onset of dyspnea, nonproductive cough, and an inability to lay flat. He had a history of prior left tunneled internal jugular dialysis catheter placement and left upper extremity dialysis fistula, which had previously required multiple fistulagrams for prolonged bleeding and elevated venous pressures. During examination, his chest x-ray showed a large left pleural effusion and he underwent thoracentesis by the emergency medicine team with evacuation of 2 L of turbid fluid.<br>Given his chronic immunosuppression, he was admitted by internal medicine for initiation of intravenous (IV) antibiotics. Thoracic surgery, transplant infectious disease, and nephrology were consulted following admission. He underwent an echocardiogram, which did not demonstrate congestive heart failure. A computed tomography (CT) scan demonstrated right internal jugular occlusion, superior vena cava (SVC) stenosis, prominent thoracic venous collaterals, and cervical and mediastinal lymphadenopathy (Figures 1 and 2). His pleural fluid cytology and cultures were negative, but testing indicated the presence of chylomicrons and his triglyceride level was 1154 mg/dL, which was consistent with a chylothorax.<b><br></b>His IV antibiotics were discontinued, and he was placed on a medium chain triglyceride diet with octreotide three times daily. A cervical lymph node biopsy was negative for lymphoma, and he was monitored closely as an outpatient for recurrence. He continued to reaccumulate chylous fluid despite dietary modifications and required additional thoracenteses.<br>Subsequently, the decision was made to proceed with a venogram and possible SVC stent placement. If this were unsuccessful, he would undergo thoracoscopic thoracic duct ligation. He was found to have hemodynamically significant stenosis of the superior SVC resulting in a 21 mm Hg pressure gradient between the left innominate vein and central SVC. He underwent successful stent placement with decompression of previously visualized left thoracic venous collaterals (Figure 3). After stent placement the pressure gradient was reduced to 1 mm Hg. The patient subsequently has remained stable, with resolution of his chylothorax without the need for further interventions.<br>Learn more: https://www.ctsnet.org/article/nontraumatic-chylothorax-setting-superior-vena-cava-stenosis
DOI: 10.7284/107890
title: Gravimeter data collected during research cruise BOLT02MV using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7674206
title: Direct and indirect effects of climate on trophic interactions in the Arctic tundra

description: Data and script associated to the paper "Direct and indirect effects of climate on trophic interactions in the Arctic tundra" in Journal of Animal Ecology<br><br> https://doi.org/10.1111/1365-2656.13104
DOI: 10.7284/107892
title: Meteorological Station data collected during research cruise BOLT02MV using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25392/leicester.data.7674101
title: Ageing and Pattern Complexity Effects in Chinese Reading

description: The file contains data and R code for the analysis of data for an experiment investigating adult age differences in eye movements during Chinese reading. The file also includes a list of the stimulu used in this experiment.
DOI: 10.25392/leicester.data.7674101.v1
title: Ageing and Pattern Complexity Effects in Chinese Reading

description: The file contains data and R code for the analysis of data for an experiment investigating adult age differences in eye movements during Chinese reading. The file also includes a list of the stimulu used in this experiment.
DOI: 10.7284/107889
title: Multibeam Echosounder data collected during research cruise BOLT02MV using a Kongsberg EM120 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7674065
title: Data from: Human-specific function of IL-10 in adipose tissue and association to insulin resistance

description: Supplemental tables 1-4, Supplemental figures 1-3, included into a paper: Human-specific function of IL-10 in adipose tissue linked to insulin resistance, by Juan R Acosta, Beatriz Tavira, Iyadh Douagi, Agne Kulyte, Peter Arner, Mikael Rydén, Jurga Laurencikiene
DOI: 10.6084/m9.figshare.7674092
title: Plos One Data set Beta Blockers for headaches

description: Data for Plos One Beta-blocker treatment of headache
DOI: 10.7284/119581
title: GNSS (Global Navigation Satellite System) data collected during research cruise C225 using a Furuno GP-32 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7673981
title: RELAX results on haptoglobin and hemopexin in the icefishes

description: Alignments and results from our RELAX analysis of haptoglobin and hemopexin in the Antarctic icefishes compared to the red-blooded Antarctic notothenioids
DOI: 10.7284/119582
title: GNSS (Global Navigation Satellite System) data collected during research cruise C225 using a Thales DG-16 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7673981.v1
title: RELAX results on haptoglobin and hemopexin in the icefishes

description: Alignments and results from our RELAX analysis of haptoglobin and hemopexin in the Antarctic icefishes compared to the red-blooded Antarctic notothenioids
DOI: 10.6084/m9.figshare.7673927
title: SOParallelCorpus

description: English - code parallel corpus from StackOverflow
DOI: 10.7284/117110
title: GNSS (Global Navigation Satellite System) data collected during research cruise C241 using a Furuno GP-32 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7674065.v3
title: Data from: Human-specific function of IL-10 in adipose tissue and association to insulin resistance

description: Supplemental tables 1-4, Supplemental figures 1-3, included into a paper: Human-specific function of IL-10 in adipose tissue linked to insulin resistance, by Juan R Acosta, Beatriz Tavira, Iyadh Douagi, Agne Kulyte, Peter Arner, Mikael Rydén, Jurga Laurencikiene
DOI: 10.6084/m9.figshare.7673927.v1
title: SOParallelData.zip

description: English - code parallel corpus from StackOverflow
DOI: 10.7284/117111
title: GNSS (Global Navigation Satellite System) data collected during research cruise C241 using a Thales DG-16 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7673876
title: ITEM 1 -- list of Java projects hosted on SourceForge.net

description: complete list of java projects under SourceForge.net (as of Feb 2019)
DOI: 10.6084/m9.figshare.7674065.v2
title: Data from: Human-specific function of IL-10 in adipose tissue and association to insulin resistance

description: Supplemental tables 1 and 2, Supplemental figure 1 included into a paper: Human-specific function of IL-10 in adipose tissue and association to insulin resistance, by Juan R Acosta, Beatriz Tavira, Iyadh Douagi, Agne Kulyte, Peter Arner, Mikael Rydén, Jurga Laurencikiene
DOI: 10.7284/119583
title: GNSS (Global Navigation Satellite System) data collected during research cruise C247 using a Furuno GP-32 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7673876.v1
title: list of Java projects hosted on SourceForge.net

description: complete list of java projects under SourceForge.net (as of Feb 2019)
DOI: 10.6084/m9.figshare.7673927.v2
title: SOParallelCorpus

description: English - code parallel corpus from StackOverflow
DOI: 10.6084/m9.figshare.7673756
title: Supplementary Material for: Association of US Dialysis Facility Staffing with Profiling of Hospital-Wide 30-Day Unplanned Readmission

description: <b><i>Background:</i></b> Unplanned hospital readmissions are a major source of morbidity among dialysis patients, in whom the risk of hospital readmission is exceptionally high. The contribution of dialysis facility staffing to hospital readmission has been largely overlooked. <b><i>Methods:</i></b> Using annual data of dialysis patients from the United States Renal Data System from 2010 to 2013, we assessed dialysis facilities with a significantly worse (SW) and facilities with a nonsignificant (NS) standardized readmission ratio (SRR). SRR estimates were risk adjusted for patient factors, past year comorbidities, and index hospitalization characteristics. Facility staffing variables were compared between 2 exposure groups: facilities with SW and NS SRRs. Four measures of staffing, including patient-to-staffing ratio, were compared between SW and matched NS facilities. <b><i>Results:</i></b> About 136,000–148,000 dialysis patients with 269,000–319,000 index hospital discharges were used to identify facilities with SW and facilities with NS SRR annually. Approximately 3–4% of facilities were identified as having SW SRR among &gt; 5,000 facilities annually. The percent of nurses-to-total staff was significantly lower in 2010 for SW facilities than in matched NS facilities (42.5 vs. 45.6%, <i>p</i> = 0.012), but this disparity was attenuated by 2013 (44.8 vs. 44.7%, <i>p</i> = 0.949). There was a higher patient-to-nurse ratio for SW facilities than for NS facilities (mean 16.4 vs. 15.2, <i>p</i> = 0.038) in 2010 as well, and the disparity was reduced by 2013. The trends were similar for patient-to-total staff and patient-to-registered nurse, but not statistically significant. <b><i>Conclusions:</i></b> This study found that dialysis facilities with SW 30-day readmission rates had lower proportions of nurses-to-total staff and higher patient-to-nurse ratios, but this disparity improved in recent years. Additional research is warranted focusing on how evidence-based staffing at dialysis facilities can contribute to reduction of hospital readmission, and this knowledge is needed to inform clinical practice guidelines and policy decisions regarding optimal dialysis patient staffing.
DOI: 10.6084/m9.figshare.7673861
title: Decrease of citric acid produced by <i>Aspergillus niger</i> through disruption of the gene encoding a putative mitochondrial citrate-oxoglutarate shuttle protein

description: The transporter that exports citric acid (CA) generated in mitochondria to the cytosol is an important component of the CA production machinery of <i>Aspergillus niger</i>. In this report, we cloned and identified the gene <i>cocA</i>, encoding a 33.7-kDa putative mitochondrial citrate-oxoglutarate shuttle protein of the CA hyper-producer <i>A. niger</i> WU-2223L. The amount of CA produced by a representative <i>cocA</i> disruptant (35 g/L) was significantly lower than that produced by strain WU-2223L (63 g/L) after culture for 12 days under CA production conditions, and the phenotype of the <i>cocA</i> disruptant differed in part from that of strain WU-2223L. A <i>cocA</i> disruptant complemented with <i>cocA</i> exhibited the same phenotypes as those of strain WU-2223L. This report is the first to show that <i>cocA</i> and its protein product clearly contribute to substantial CA production by <i>A. niger</i>, and provides a significant insight into microbial organic acid production by fermentation. <b>Abbreviations</b>: CA: citric acid; CD medium: Czapek-Dox medium; CS: citrate synthase; CTP: citrate transport protein; HR: homologous recombination; MCF: mitochondrial carrier family; RT-PCR: reverse-transcription PCR; TCA: tricarboxylic acid The gene <i>cocA</i> encoding a putative mitochondrial citrate-oxoglutarate shuttle protein greatly contributes to hyper-production of citric acid by <i>Aspergillus niger</i>.
DOI: 10.7284/119584
title: GNSS (Global Navigation Satellite System) data collected during research cruise C247 using a Thales DG-16 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119585
title: GNSS (Global Navigation Satellite System) data collected during research cruise C252 using a Furuno GP-32 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7673699
title: Table S2

description: <b>Table S2. </b>Timings of puberty events and their associations with zBMI in girls
DOI: 10.6084/m9.figshare.7673756.v1
title: Supplementary Material for: Association of US Dialysis Facility Staffing with Profiling of Hospital-Wide 30-Day Unplanned Readmission

description: <b><i>Background:</i></b> Unplanned hospital readmissions are a major source of morbidity among dialysis patients, in whom the risk of hospital readmission is exceptionally high. The contribution of dialysis facility staffing to hospital readmission has been largely overlooked. <b><i>Methods:</i></b> Using annual data of dialysis patients from the United States Renal Data System from 2010 to 2013, we assessed dialysis facilities with a significantly worse (SW) and facilities with a nonsignificant (NS) standardized readmission ratio (SRR). SRR estimates were risk adjusted for patient factors, past year comorbidities, and index hospitalization characteristics. Facility staffing variables were compared between 2 exposure groups: facilities with SW and NS SRRs. Four measures of staffing, including patient-to-staffing ratio, were compared between SW and matched NS facilities. <b><i>Results:</i></b> About 136,000–148,000 dialysis patients with 269,000–319,000 index hospital discharges were used to identify facilities with SW and facilities with NS SRR annually. Approximately 3–4% of facilities were identified as having SW SRR among &gt; 5,000 facilities annually. The percent of nurses-to-total staff was significantly lower in 2010 for SW facilities than in matched NS facilities (42.5 vs. 45.6%, <i>p</i> = 0.012), but this disparity was attenuated by 2013 (44.8 vs. 44.7%, <i>p</i> = 0.949). There was a higher patient-to-nurse ratio for SW facilities than for NS facilities (mean 16.4 vs. 15.2, <i>p</i> = 0.038) in 2010 as well, and the disparity was reduced by 2013. The trends were similar for patient-to-total staff and patient-to-registered nurse, but not statistically significant. <b><i>Conclusions:</i></b> This study found that dialysis facilities with SW 30-day readmission rates had lower proportions of nurses-to-total staff and higher patient-to-nurse ratios, but this disparity improved in recent years. Additional research is warranted focusing on how evidence-based staffing at dialysis facilities can contribute to reduction of hospital readmission, and this knowledge is needed to inform clinical practice guidelines and policy decisions regarding optimal dialysis patient staffing.
DOI: 10.6084/m9.figshare.7673861.v2
title: Decrease of citric acid produced by <i>Aspergillus niger</i> through disruption of the gene encoding a putative mitochondrial citrate-oxoglutarate shuttle protein

description: The transporter that exports citric acid (CA) generated in mitochondria to the cytosol is an important component of the CA production machinery of <i>Aspergillus niger</i>. In this report, we cloned and identified the gene <i>cocA</i>, encoding a 33.7-kDa putative mitochondrial citrate-oxoglutarate shuttle protein of the CA hyper-producer <i>A. niger</i> WU-2223L. The amount of CA produced by a representative <i>cocA</i> disruptant (35 g/L) was significantly lower than that produced by strain WU-2223L (63 g/L) after culture for 12 days under CA production conditions, and the phenotype of the <i>cocA</i> disruptant differed in part from that of strain WU-2223L. A <i>cocA</i> disruptant complemented with <i>cocA</i> exhibited the same phenotypes as those of strain WU-2223L. This report is the first to show that <i>cocA</i> and its protein product clearly contribute to substantial CA production by <i>A. niger</i>, and provides a significant insight into microbial organic acid production by fermentation. <b>Abbreviations</b>: CA: citric acid; CD medium: Czapek-Dox medium; CS: citrate synthase; CTP: citrate transport protein; HR: homologous recombination; MCF: mitochondrial carrier family; RT-PCR: reverse-transcription PCR; TCA: tricarboxylic acid The gene <i>cocA</i> encoding a putative mitochondrial citrate-oxoglutarate shuttle protein greatly contributes to hyper-production of citric acid by <i>Aspergillus niger</i>.
DOI: 10.6084/m9.figshare.7673669
title: EAP18-0580.R1 - code and data.zip

description: <b>Data and code to reproduce the analysis in Hauenstein, S., J. Fattebert, M. Grüebler, B. Naef-Daenzer, G. Pe'er and F. Hartig. 2019. Calibrating an individual-based movement model to predict functional connectivity for little owls. <i>Ecological Applications</i></b><i><br></i><b>Fileset structure:</b><br>- folder 'code' contains all R scripts and functions to reproduce the environmental data manipulation and the analysis- 'LOSim' is an R package acting as interface to the IBM coded in c++. This R package can also be installed from GitHub: https://github.com/shauenstein/Anoctua<br>- 'data' contains the raw data as provided by the Swiss Ornithologial Institute. Additional meta data has to be requester there. 'data' also contains 'gpsUD.csv', which contains the utility distribution data used to predict habitat suitability.<br>- 'envVars' only contains the estimated habitat suitability grid, which is necessary to run the IBM ('LOSim'). Additional environmental data has to be downloaded or requested from the sources referenced in the bibliography of the paper this repository is linked to.
DOI: 10.6084/m9.figshare.7673687
title: Table S1

description: <b>Table S1. </b>Associations with prepubertal zBMI in the longitudinal sample of boys<br>
DOI: 10.6084/m9.figshare.7673861.v1
title: Decrease of citric acid produced by <i>Aspergihllus niger</i> through disruption of the gene encoding a putative mitochondrial citrate-oxoglutarate shuttle protein

description: The transporter that exports citric acid (CA) generated in mitochondria to the cytosol is an important component of the CA production machinery of <i>Aspergillus niger</i>. In this report, we cloned and identified the gene <i>cocA</i>, encoding a 33.7-kDa putative mitochondrial citrate-oxoglutarate shuttle protein of the CA hyper-producer <i>A. niger</i> WU-2223L. The amount of CA produced by a representative <i>cocA</i> disruptant (35 g/L) was significantly lower than that produced by strain WU-2223L (63 g/L) after culture for 12 days under CA production conditions, and the phenotype of the <i>cocA</i> disruptant differed in part from that of strain WU-2223L. A <i>cocA</i> disruptant complemented with <i>cocA</i> exhibited the same phenotypes as those of strain WU-2223L. This report is the first to show that <i>cocA</i> and its protein product clearly contribute to substantial CA production by <i>A. niger</i>, and provides a significant insight into microbial organic acid production by fermentation. <b>Abbreviations</b>: CA: citric acid; CD medium: Czapek-Dox medium; CS: citrate synthase; CTP: citrate transport protein; HR: homologous recombination; MCF: mitochondrial carrier family; RT-PCR: reverse-transcription PCR; TCA: tricarboxylic acid The gene <i>cocA</i> encoding a putative mitochondrial citrate-oxoglutarate shuttle protein greatly contributes to hyper-production of citric acid by <i>Aspergillus niger</i>.
DOI: 10.7284/119586
title: GNSS (Global Navigation Satellite System) data collected during research cruise C252 using a Thales DG-16 instrument system onboard the platform SSV Corwith Cramer

description: Original (unprocessed) data collected during a Field_expedition