cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8298359.v1
title: Dataset for: Vection in Virtual Reality Modulates Vestibular-Evoked Myogenic Potentials

description: The popularity of Virtual Reality (VR) has increased rapidly in recent years. While significant technological advancements are apparent, a troublesome problem with VR is that between 20% and 80% of users will experience unpleasant side-effects such as nausea, disorientation, blurred vision, and headaches – a malady known as Cybersickness. Cybersickness may be caused by a conflict between sensory signals for self-motion: while vision signals that the user is moving in a certain direction with certain acceleration, the vestibular organs provide no corroborating information. To resolve the sensory conflict vestibular cues may be down-weighted leading to an alteration of how the brain interprets actual vestibular information. This may account for the frequently reported after-effects of VR exposure. Here we investigated whether exposure to vection in VR modulates vestibular processing. We measured vestibular-evoked myogenic potentials (VEMPs) during brief immersion in a vection-inducing VR environment presented via head-mounted display. We found changes in VEMPs asymmetry ratio, with a substantial increase in VEMPs amplitude recorded on the left sternocleidomastoid muscle following just one minute of exposure to vection in VR. Our results suggest that exposure to vection in VR modulates vestibular processing, which may explain common after-effects of VR.
DOI: 10.6084/m9.figshare.8298332.v1
title: Schifanella SHIVC All Data.xlsx

description: Complete Dataset for Schifanella Manuscript<br>
DOI: 10.6084/m9.figshare.8298152
title: dibujos-mascotas-golden-retriever.jpg

description: <br>Galería del retrato es un sitio creado para ofrecerte retratos por encargo de alta calidad, realizados con la máxima profesionalidad.
DOI: 10.6084/m9.figshare.8298044
title: Supplemental Table 5_Full list of enriched TF binding sites in top PAH genes.xlsx

description: <b>Supplemental Table 5_Full list of enriched TF binding sites in top PAH genes</b>
DOI: 10.6084/m9.figshare.8298035
title: Supplemental Table 2_APAH vs Ctrl gene list.xlsx

description: <b>Supplemental Table 2_APAH vs Ctrl gene list</b>
DOI: 10.6084/m9.figshare.8298038
title: Supplemental Table 3_PAH (IPAH & APAH) vs Ctrl gene list.xlsx

description: <b>Supplemental Table 3_PAH (IPAH & APAH) vs Ctrl gene list</b>
DOI: 10.6084/m9.figshare.8298041
title: Supplemental Table 4_2530 from published gene lists_v4.xlsx

description: <b>Supplemental Table 4_2530 from published gene lists</b>
DOI: 10.6084/m9.figshare.8298032
title: Supplemental Table 1_IPAH vs Ctrl gene list.xlsx

description: <strong> </strong><strong>Supplemental Table 1_IPAH vs Ctrl gene list</strong><strong> </strong>
DOI: 10.6084/m9.figshare.8298008
title: List of decisions in a case software startup

description: Detailed description to be added once the associated paper is published.
DOI: 10.6084/m9.figshare.8298008.v1
title: List of decisions in a case software startup

description: Detailed description to be added once the associated paper is published.
DOI: 10.6084/m9.figshare.8297993.v1
title: Additive Heredity Model for the Analysis of Mixture-of-Mixtures Experiments

description: The mixture-of-mixtures experiment is different from the classical mixture experiment in that the mixture component in mixture-of-mixtures experiments, known as the major component, is made up of sub-components, known as the minor components. In this paper, we propose an additive heredity model for analyzing mixture-of-mixtures experiments. The proposed model considers an additive structure to inherently connect the major components with the minor components. To enable a meaningful interpretation for the estimated model, the hierarchical and heredity principles are applied by using the nonnegative garrote technique for model selection. The performance of the additive heredity model was compared to several conventional methods in both unconstrained and constrained mixture-of-mixtures experiments. The additive heredity model was then successfully applied in two real-world problems studied previously in the literature.
DOI: 10.6084/m9.figshare.8297138
title: Biological datasets for optical coherence refraction tomography (OCRT)

description: This repository contains the 7 .mat files containing the multi-angle datasets used to generate figures 4-6 of our paper, <i>Optical coherence refraction tomography</i> (https://www.nature.com/articles/s41566-019-0508-1, or https://rdcu.be/bO6eQ).The accompanying code that processes these multi-angle datasets into high-resolution reconstructions and refractive index maps can be found at https://github.com/kevinczhou/optical-coherence-refraction-tomography.<br>
DOI: 10.6084/m9.figshare.8295794
title: Data collection

description: File for data collection
DOI: 10.6084/m9.figshare.8295794.v1
title: Data collection

description: File for data collection
DOI: 10.6084/m9.figshare.8295779
title: Selected Pre-therapy MTB transcripts

description: <b>Pre-therapy levels of selected <i>Mycobacterium tuberculosis </i>transcripts in <i></i>sputum, stratified by 2-month culture conversion</b>
DOI: 10.1184/r1/8295647
title: Optimism versus pessimism as predictors of physical health: A comprehensive reanalysis of dispositional optimism research. American Psychologist.(2020, DOI: 10.1037/amp0000666).

description: Prior research has related dispositional optimism to physical health. Traditionally, dispositional optimism is treated as a bipolar construct, anchored at one end by optimism and the other by pessimism. Optimism and pessimism, however, may not be diametrically opposed, but rather may reflect two independent, but related dimensions. This paper reports a reanalysis of data from previously published studies on dispositional optimism. The reanalysis was designed to evaluate whether the presence of optimism or the absence of pessimism predicted positive physical health more strongly. Relevant literatures were screened for studies relating dispositional optimism to physical health. Authors of relevant studies were asked to join a consortium, the purpose of which was to re-analyze previously published data sets separating optimism and pessimism into distinguishable components. Ultimately, data were received from 61 separate samples (N = 221,133). Meta-analytic analysis of data in which optimism and pessimism were combined into an overall index (the typical procedure) revealed a significant positive association with an aggregated measure of physical health outcomes (<i>r</i> = .026, <i>p</i>&lt; .001), as did meta-analytic analyses with the absence of pessimism (<i>r</i> = .029, <i>p</i> &lt; .001) and the presence of optimism (<i>r</i>= .011, <i>p</i> &lt; .034) separately. The effect size for pessimism was significantly larger than the effect size for optimism (<i>Z</i> = -2.403, <i>p</i> &lt; .02). Thus, the absence of pessimism was more strongly related to positive health outcomes than was the presence of optimism. Implications of the findings for future research and clinical interventions are discussed.
DOI: 10.1184/r1/8295647.v1
title: Optimism versus pessimism as predictors of physical health: A comprehensive reanalysis of dispositional optimism research. American Psychologist.(2020, DOI: 10.1037/amp0000666).

description: Prior research has related dispositional optimism to physical health. Traditionally, dispositional optimism is treated as a bipolar construct, anchored at one end by optimism and the other by pessimism. Optimism and pessimism, however, may not be diametrically opposed, but rather may reflect two independent, but related dimensions. This paper reports a reanalysis of data from previously published studies on dispositional optimism. The reanalysis was designed to evaluate whether the presence of optimism or the absence of pessimism predicted positive physical health more strongly. Relevant literatures were screened for studies relating dispositional optimism to physical health. Authors of relevant studies were asked to join a consortium, the purpose of which was to re-analyze previously published data sets separating optimism and pessimism into distinguishable components. Ultimately, data were received from 61 separate samples (N = 221,133). Meta-analytic analysis of data in which optimism and pessimism were combined into an overall index (the typical procedure) revealed a significant positive association with an aggregated measure of physical health outcomes (<i>r</i> = .026, <i>p</i>&lt; .001), as did meta-analytic analyses with the absence of pessimism (<i>r</i> = .029, <i>p</i> &lt; .001) and the presence of optimism (<i>r</i>= .011, <i>p</i> &lt; .034) separately. The effect size for pessimism was significantly larger than the effect size for optimism (<i>Z</i> = -2.403, <i>p</i> &lt; .02). Thus, the absence of pessimism was more strongly related to positive health outcomes than was the presence of optimism. Implications of the findings for future research and clinical interventions are discussed.
DOI: 10.6084/m9.figshare.8295575
title: The mitochondria genomes scaffold 1 of Camellia sinensis var. assamica

description: The mt genome scaffold 1 final assembly and accompanying gene annotations of C. sinensis var. assamica.
DOI: 10.6084/m9.figshare.8295551
title: Health Literacy and Postpartum Outcomes

description: Prospective cohort study of postpartum women assessing association between health literacy and postpartum outcomes. Health literacy was assessed using REALM-SF. Postpartum outcomes were reviewed immediately postpartum (postpartum hospitalization) and at postpartum visit. Demographic and clinical characteristics abstracted from medical record and survey taken at the time of REALM-SF assessment.
DOI: 10.6084/m9.figshare.8295551.v1
title: Health Literacy and Postpartum Outcomes

description: Prospective cohort study of postpartum women assessing association between health literacy and postpartum outcomes. Health literacy was assessed using REALM-SF. Postpartum outcomes were reviewed immediately postpartum (postpartum hospitalization) and at postpartum visit. Demographic and clinical characteristics abstracted from medical record and survey taken at the time of REALM-SF assessment.
DOI: 10.6084/m9.figshare.8295575.v2
title: The mitochondria genomes scaffold 1 of Camellia sinensis var. assamica

description: The mt genome scaffold 1 final assembly and accompanying gene annotations of C. sinensis var. assamica.
DOI: 10.6084/m9.figshare.8295638.v1
title: Tests for scale changes based on pairwise differences

description: In many applications it is important to know whether the amount of fluctuation in a series of observations changes over time. In this article, we investigate different tests for detecting changes in the scale of mean-stationary time series. The classical approach, based on the CUSUM test applied to the squared centered observations, is very vulnerable to outliers and impractical for heavy-tailed data, which leads us to contemplate test statistics based on alternative, less outlier-sensitive scale estimators. It turns out that the tests based on Gini’s mean difference (the average of all pairwise distances) and generalized Qn estimators (sample quantiles of all pairwise distances) are very suitable candidates. They improve upon the classical test not only under heavy tails or in the presence of outliers, but also under normality. We use recent results on the process convergence of U-statistics and U-quantiles for dependent sequences to derive the limiting distribution of the test statistics and propose estimators for the long-run variance. We show the consistency of the tests and demonstrate the applicability of the new change-point detection methods at two real-life data examples from hydrology and finance.
DOI: 10.6084/m9.figshare.8295503
title: Ensemble Band Gap Data

description: Data used for the publication "Extracting knowledge from DFT: Experimental band gap predictions through ensemble learning". This data allows anyone to test their own methods against the same train test split leading to comparable results.
DOI: 10.6084/m9.figshare.8295575.v1
title: Descriptive Title: The mitochondria genomes scaffold 1 of Camellia sinensis var. assamica

description: The mt genome scaffold 1 final assembly and accompanying gene annotations of C. sinensis var. assamica.
DOI: 10.6084/m9.figshare.8295500.v2
title: A Function Emulation Approach for Doubly Intractable Distributions

description: Doubly intractable distributions arise in many settings, for example, in Markov models for point processes and exponential random graph models for networks. Bayesian inference for these models is challenging because they involve intractable normalizing “constants” that are actually functions of the parameters of interest. Although several computational methods have been developed for these models, each can be computationally burdensome or even infeasible for many problems. We propose a novel algorithm that provides computational gains over existing methods by replacing Monte Carlo approximations to the normalizing function with a Gaussian process-based approximation. We provide theoretical justification for this method. We also develop a closely related algorithm that is applicable more broadly to any likelihood function that is expensive to evaluate. We illustrate the application of our methods to challenging simulated and real data examples, including an exponential random graph model, a Markov point process, and a model for infectious disease dynamics. The algorithm shows significant gains in computational efficiency over existing methods, and has the potential for greater gains for more challenging problems. For a random graph model example, we show how this gain in efficiency allows us to carry out accurate Bayesian inference when other algorithms are computationally impractical. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.8295440
title: The mitochondria scaffold 2 genomes of Camellia sinensis var. assamica

description: The mt genome scaffold 2 final assembly and accompanying gene annotations of <i>C.sinensis</i> var. <i>assamica</i>.<br>
DOI: 10.6084/m9.figshare.8295500.v1
title: A Function Emulation Approach for Doubly Intractable Distributions

description: Doubly intractable distributions arise in many settings, for example in Markov models for point processes and exponential random graph models for networks. Bayesian inference for these models is challenging because they involve intractable normalising” constants” that are actually functions of the parameters of interest. Although several computational methods have been developed for these models, each can be computationally burdensome or even infeasible for many problems. We propose a novel algorithm that provides computational gains over existing methods by replacing Monte Carlo approximations to the normalising function with a Gaussian process-based approximation. We provide theoretical justification for this method. We also develop a closely related algorithm that is applicable more broadly to any likelihood function that is expensive to evaluate. We illustrate the application of our methods to challenging simulated and real data examples, including an exponential random graph model, a Markov point process, and a model for infectious disease dynamics. The algorithm shows significant gains in computational efficiency over existing methods, and has the potential for greater gains for more challenging problems. For a random graph model example, we show how this gain in efficiency allows us to carry out accurate Bayesian inference when other algorithms are computationally impractical.
DOI: 10.6084/m9.figshare.8295335
title: Tero PSet

description: This custom PSet was Generated using Pachyderm. Dataset: , Version: , Genome:
DOI: 10.6084/m9.figshare.8295419
title: quote_db.csv

description: Dataset generated during Master's thesis at IT University of Copenhagen, consisting of quotes from Danish politicians. The dataset is annotated for the task of Stance Detection.<br><br>The task was solved using Neural Network architectures, and comparative analysis was performed using alternative approaches. <br><br>Code for the project, as well as the Thesis report which includes classification results, which can be used as benchmarks, are available at:<br>https://github.com/rasleh/Political-Stance-in-Danish<br>
DOI: 10.6084/m9.figshare.8295419.v1
title: quote_db.csv

description: Dataset generated during Master's thesis at IT University of Copenhagen, consisting of quotes from Danish politicians. The dataset is annotated for the task of Stance Detection.<br><br>The task was solved using Neural Network architectures, and comparative analysis was performed using alternative approaches. <br><br>Code for the project, as well as the Thesis report which includes classification results, which can be used as benchmarks, are available at:<br>https://github.com/rasleh/Political-Stance-in-Danish<br>
DOI: 10.6084/m9.figshare.8295440.v1
title: tea_mitochondria_annotation2.gb

description: The mt genome scaffold 2 final assembly and accompanying gene annotations of <i>C.sinensis</i> var. <i>assamica</i>.<br>
DOI: 10.6084/m9.figshare.8295335.v1
title: Tero PSet

description: This custom PSet was Generated using Pachyderm. Dataset: , Version: , Genome:
DOI: 10.6084/m9.figshare.8295299
title: A total of 450 birds with the 600 K Affymetrix® Axiom® HD genotyping array

description: A total of 450 birds were randomly selected for genotyping with the 600 K Affymetrix® Axiom® HD genotyping array (Kranis et al., 2013).The 600 K genotyping array contained 580,961 SNP probes across 28 autosomes, two linkage groups (LGE64 and LGE22C19W28_E50C23), and two sex chromosomes.
DOI: 10.6084/m9.figshare.8295440.v2
title: Descriptive Title: The mitochondria scaffold 2 genomes scaffold1 of Camellia sinensis var. assamica

description: The mt genome scaffold 2 final assembly and accompanying gene annotations of <i>C.sinensis</i> var. <i>assamica</i>.<br>
DOI: 10.6084/m9.figshare.8295275
title: Supplementary Material for: Soluble NKG2D Ligands Are Potential Biomarkers and Sentinels of Immune-Mediated Bone Marrow Injury in Bone Marrow Failure Syndromes

description: Immune-mediated processes are considered important in the pathogenesis of bone marrow failure syndromes (BFS). We previously reported that natural killer group 2D (NKG2D) ligands were expressed on pathological blood cells of patients with BFS and that NKG2D immunity may be involved in bone marrow failure. In addition to membranous NKG2D ligands on the cell surface, soluble NKG2D ligands can exist in plasma. We therefore examined the relationship between soluble NKG2D ligands and blood cell counts in 86 patients with BFS, including aplastic anemia, myelodysplastic syndrome with single lineage dysplasia, and paroxysmal nocturnal hemoglobinuria. Approximately half of the BFS patients were positive for soluble NKG2D ligands in the plasma by enzyme-linked immunosorbent assay, and soluble NKG2D ligand-positive BFS patients exhibited severe cytopenia regardless of membranous NKG2D ligand expression. In vitro<i></i>analyses demonstrated that soluble ULBP1, an NKG2D ligand, down-regulated NKG2D receptors on CD2-positive cells in peripheral blood. Moreover, soluble ULBP1 attenuated the cytotoxic effects of peripheral blood mononuclear cells on K562, which express membranous ULBP1. Our results suggest that soluble NKG2D ligands can be easy-to-measure biomarkers for the prediction of activity of immune-meditated bone marrow injury in BFS and that soluble NKG2D ligands suppress redundant immune-mediated bone marrow injury.
DOI: 10.6084/m9.figshare.8295275.v1
title: Supplementary Material for: Soluble NKG2D Ligands Are Potential Biomarkers and Sentinels of Immune-Mediated Bone Marrow Injury in Bone Marrow Failure Syndromes

description: Immune-mediated processes are considered important in the pathogenesis of bone marrow failure syndromes (BFS). We previously reported that natural killer group 2D (NKG2D) ligands were expressed on pathological blood cells of patients with BFS and that NKG2D immunity may be involved in bone marrow failure. In addition to membranous NKG2D ligands on the cell surface, soluble NKG2D ligands can exist in plasma. We therefore examined the relationship between soluble NKG2D ligands and blood cell counts in 86 patients with BFS, including aplastic anemia, myelodysplastic syndrome with single lineage dysplasia, and paroxysmal nocturnal hemoglobinuria. Approximately half of the BFS patients were positive for soluble NKG2D ligands in the plasma by enzyme-linked immunosorbent assay, and soluble NKG2D ligand-positive BFS patients exhibited severe cytopenia regardless of membranous NKG2D ligand expression. In vitro<i></i>analyses demonstrated that soluble ULBP1, an NKG2D ligand, down-regulated NKG2D receptors on CD2-positive cells in peripheral blood. Moreover, soluble ULBP1 attenuated the cytotoxic effects of peripheral blood mononuclear cells on K562, which express membranous ULBP1. Our results suggest that soluble NKG2D ligands can be easy-to-measure biomarkers for the prediction of activity of immune-meditated bone marrow injury in BFS and that soluble NKG2D ligands suppress redundant immune-mediated bone marrow injury.
DOI: 10.6084/m9.figshare.8295440.v4
title: The mitochondria scaffold 2 genomes of Camellia sinensis var. assamica

description: The mt genome scaffold 2 final assembly and accompanying gene annotations of <i>C.sinensis</i> var. <i>assamica</i>.<br>
DOI: 10.6084/m9.figshare.8295203
title: Spearman correlation coefficient matrix

description: The file contains a correlation analysis of the skill requirements for software testers. The dataset comes from 400 job advertisements.We use the file to look for correlated skills, in our quest to find if there are preset profiles of the software testers emerging from the demands formulated by employers at hiring.
DOI: 10.6084/m9.figshare.8295440.v3
title: Descriptive Title: The mitochondria scaffold 2 genomes of Camellia sinensis var. assamica

description: The mt genome scaffold 2 final assembly and accompanying gene annotations of <i>C.sinensis</i> var. <i>assamica</i>.<br>
DOI: 10.6084/m9.figshare.8295140
title: Thermoelastic solutions for thermal distributions moving over thin slim rod under memory-dependent three-phase lag magneto-thermoelasticity

description: Enlightened by the Caputo fractional derivative, the present study deals with a novel mathematical model of generalized thermoelasticity to investigate the transient phenomena due to the influence of magnetic field and moving heat source in a rod in the context of three-phase lag (TPL) theory of thermoelasticity. Both ends of the rod are fixed and heat insulated. Employing Laplace transform as a tool, the problem has been transformed into the space-domain and solved analytically. Finally, solutions in the real-time domain are obtained by applying the inverse Laplace transform. Numerical calculation for stress, displacement, and temperature within the rod is carried out and displayed graphically. The effect of moving heat source speed on temperature, stress, and temperature is studied. It is found from the distributions that the temperature, thermally induced displacement and stress of the rod are found to decrease at large source speed. For the better understanding of the effect of moving heat source on all the distributions, three animations are added.