cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zvsk3k9cf2
title: Small versions of the extracted features datasets for 9 attacks on IP camera and IoT networks generated by Mirskey et al (2018).

description: Mirsky et al. (2018) recorded traffic from two networks: (1) an operational IP camera video surveillance network on which they conducted 8 attacks that affect the availability and integrity of the video uplinks; (2) a noisier IoT network consisting of 3 PCs and 9 IoT devices, one of which was infected with the Mirai botnet malware. A detailed description of the attacks and network typologies can be found in their article (see attached link): Y. Mirsky, T. Doitshman, Y. Elovici, and A. Shabtai, “Kitsune: An Ensemble of Autoencoders for Online Network Intrusion Detection,” in NDSS, 2018. For each of these 9 attacks, Mirsky et al. compiled a dataset of extracted feature vectors that were extracted for every packet. These datasets and their descriptions are available from the authors at attached link. From each of these datasets, we extracted a small segment of consecutive packets which we split into training and test sets as described in the included "Dataset Properties.csv". Using these smaller datasets allows the quick evaluation of attack detection experiments. This can be useful when you need to conduct an exhaustive yet relatively fast model selection for a network intrusion detection system (IDS) given a large parameter value space. It also convenient for testing & debugging during IDS development.
DOI: 10.6084/m9.figshare.12592250.v1
title: JVASP-85700 to JVASP-86544

description: JARVIS-DFT input/output files
DOI: 10.17632/9tgnvj9nsg
title: BPMN Diagrams Dataset of Functional Requirements

description: This dataset is a collection of functional requirements from three business software applications, namely employee cooperatives, store, and mini hospitals in the form of BPMN diagrams. Each BPMN diagram represents a functional requirement or a functional process (FP). The BPMN diagram of the cooperative application illustrates the functional processes associated with cooperative application operations, such as user management, adding new members, making a cash transaction, making a loan repayment, and others. The BPMN diagram of the store application illustrates the functional processes that occur in retail operations, such as sales processes, making customer payments, purchase orders, making new suppliers, and others. BPMN diagrams from hospital applications include functional processes related to patient management, registration of patients, general inpatient registration, emergency room triage, and others.
DOI: 10.17632/kr5mxdckk2
title: LINF_150019900

description: Nucleoside transporter 1 | NT1A; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.12174273.v2
title: Barriers to ART adherence among women in rural Eswatini

description: This data was collected for a mixed methods study investigating barriers to ART adherence among rural women in Eswatini. PDFs contain qualitative data collected from focus group discussions and key informants. Excel file contains quantitative data from survey interviews.<br>
DOI: 10.6084/m9.figshare.19982024.v1
title: Supplementary Material for: Comparison of Postoperative Neurocognitive Function in Older Adult Patients with and without Diabetes Mellitus

description: <b><i>Introduction:</i></b> Delayed neurocognitive recovery (DNR; neurocognitive disorder up to 30 days postoperative) and postoperative neurocognitive disorders (POCD; neurocognitive disorder 1–12 months postoperative) occur frequently after surgery, with diabetes mellitus (DM) suggested to contribute to this. This was a single-center prospective cohort study. The main aim of this study was to investigate the role of DM and preoperative hemoglobin A1c (HbA1c) in the development of POCDs after noncardiac surgery. <b><i>Methods:</i></b> Older adult patients ≥65 years of age scheduled for elective surgery were recruited. The Modified Telephone Interview for Cognitive Status questionnaire (TICS-M), a test of global cognitive functioning, was administered to determine cognition. Preoperative, 30-day postoperative, and 6-month postoperative cognition were compared for patients with and without DM. Cognitive decline was subdivided into mild (1 to 2 standard deviations below controls) and major (≥2 standard deviations below controls) DNR or POCD. Preoperative HbA1c levels were correlated with TICS-M scores. <b><i>Results:</i></b> We analyzed 102 patients [median (IQR [range]) age 72.0 (5 [68–74])]), who were divided into patients with DM (80 patients [78%]) and patients without DM (22 patients [22%]). Baseline cognitive function was similar for both groups. Repeated measures ANOVA showed that mean DM patient TICS-M scores decreased 30 days postoperative (<i>F</i>(2, 200) = 4.0, <i>p</i> = 0.02), with subsequent recovery 6-month postoperative, compared to stable TICS-M scores in non-DM patients. There were significantly more DM patients with DNR than non-DM patients (<i>n</i> = 11 [50%] vs. <i>n</i> = 14 [17.5%]; <i>p</i> = 0.031). There were no between-group differences in mild or major POCD. Higher preoperative HbA1c levels were significantly correlated with decreased 30-day Δcognition scores (<i>F</i>(1, 54) = 9.4, <i>p</i> = 0.003) with an <i>R</i><sup>2</sup> of 0.149 (β −0.45, 95% confidence interval: −0.735 to −0.154). <b><i>Conclusions:</i></b> Older adult patients with DM undergoing surgery have an increased risk of DNR compared to older adult non-DM patients, but no increased risk of POCD. In DM patients, higher preoperative HbA1c levels were associated with an increased risk of DNR.
DOI: 10.6084/m9.figshare.21028711.v1
title: Research Placement with the National Justice Museum

description: This dataset details a six-month research placement with the National Justice Museum undertaken as part of a PhD between January and July 2021. The purpose of the placement was to create an interpretative Twine game for an upcoming exhibition project at the Museum entitled 'Ingenuity, Creativity and Hope'. The research used a research-through-design methodology in which the design thinking process formed the basis of the approach to game development. An autoethnographic methodology was also used when writing up the placement as part of the PhD Thesis. The project received ethical and data collection approval from Nottingham Trent University prior to commencement.<br> The dataset is divided into four folders: <br> 1. Research Notes This folder contains the placement research diary which details the day-to-day activities and researchers field notes. It also includes the Game Development Process Documentation which includes materials such as design principles drawn from the wider research, brainstorming documents, game ideation, game planning and development notes, and text revisions. <br> 2. Meeting Minutes and Transcripts This folder contains the Information and Consent Form for participants. It also contains Fortnightly Meeting Notes which include meeting minutes of meetings undertaken online during the placement, and progress presentations given by the researcher during those meetings. <br> 3. Prototype Game Files This folder contains the HTML files of the game prototypes developed across the course of the placement and accompanying materials. The HTML files can be opened to play in any browser or imported to Twine to view the code. <br> 4. Hard Craft Game File This folder contains the final version of the placement game 'Hard Craft' and accompanying materials which were handover over the National Justice Museum for use in their exhibition program. The HTML file 'index' can be opened to play in any browser or imported to Twine to view the code. It also includes handover documents which accompanied this process and training / informational Twine documentation created for the National Justice Museum.<br>
DOI: 10.6084/m9.figshare.22292479.v1
title: HNSCC data and code

description: We characterized the immune context in HPV+ and HPV− HNSCC by integrating scRNA-seq and bulk RNA-seq data.
DOI: 10.6084/m9.figshare.24548443.v1
title: Mouse_ovaries_highres_images

description: Zip folder containing images (TIFF files) of Hematoxylin & Eosin stained tissue sections from untreated and hormone treated ovaries of immature mice. These images represent tissues that were used for high-resolution spatial transcriptomics experiment using Curio Seeker technology.
DOI: 10.6084/m9.figshare.24961596.v1
title: Dataset

description: Dataset from the paper "Short-time exposure to light at night affects incubation patterns and correlates with subsequent body weight in great tits (<i>Parus major</i>)" submitted to J<i>ournal of Experimental Zoology Part A.</i><b>Abstract</b>Artificial light at night (ALAN) widely affects wildlife by blurring light-dark differences, including transitions such as sunrise and sunset, thereby affecting regulation of diel rhythms. As a result, activity onsets in many wild diurnal songbirds advance under ALAN. From chronobiological studies, it is known that the direction and strength of the response to light depends on when during the night exposure takes place. However, these experiments are mostly done under continuous darkness conditions, when animals have free-running rhythms. It remains unclear whether phase-dependence also holds in entrained, wild songbirds; i.e., does the effect of ALAN on activity patterns differ between exposure in the morning compared to the evening? This information is essential to assess the effects of mitigation measures by limiting ALAN to selected times of the night. We exposed incubating great tits (<i>Parus major</i>) inside the nest-box to four hours of dim light, of which one hour overlapped with dawn before sunrise or dusk after sunset. We found a small advancing effect of morning-light on activity onset and of evening-light on offset compared to dark controls but not vice versa. Breeding success and chick condition were unaffected by the light treatments. However, light-treated females had lower weights 9-18 days after the end of the treatment compared to the controls, independent of whether ALAN occurred in the morning or the evening, indicating possible costs of ALAN. Despite the weak behavioural response, ALAN might have affected female’s circadian clock or physiology resulting in lower body condition.
DOI: 10.6084/m9.figshare.29005937.v1
title: S1.分离菌株耐药基因注释结果

description: 毕业论文补充材料1
DOI: 10.6084/m9.figshare.8153834.v2
title: Germline VCF files of 197 CMTs and 185 normal samples

description: The compressed file is germline mutations (SNPs and indels) of 197 CMTs and 185 normal samples called by GATK haplotype caller.<br>
DOI: 10.6084/m9.figshare.13256900.v1
title: 1998-2017 Belt and Road Initiative countries Fragile States Index and global terrorism attack events

description: This directory contains the data and introduction of it required to reproduce analyses reported in the associated paper
DOI: 10.6084/m9.figshare.22249597.v1
title: Supplementary Material for: Prenatal Genetic Diagnosis of Fetal Cystic Hygroma: A Retrospective Single-Center Study from China

description: Fetal cystic hygroma (CH) is associated with poor prognosis and chromosomal anomalies. Recent studies have suggested that the genetic background of affected fetuses is essential for predicting pregnancy outcomes. However, the detection performance of different genetic approaches for the etiological diagnosis of fetal CH remains unclear. In this study, we aimed to compare the diagnostic efficiency of karyotyping and chromosomal microarray analysis (CMA) in a local fetal CH cohort, and tried to propose an optimized testing strategy that may help improve the cost-effectiveness of disease management. We reviewed all pregnancies that underwent invasive prenatal diagnosis between January 2017 and September 2021 at one of the largest prenatal diagnostic centers in Southeast China. We collected cases identified by the presence of fetal CH. Prenatal phenotypes and laboratory records of these patients were audited, collated, and analyzed. The detection rates of karyotyping and CMA were compared, and the concordance rate of these two methods was calculated. A total of 157 fetal CH cases were screened from 6,059 patients who underwent prenatal diagnosis. Diagnostic genetic variants were identified in 44.6% (70/157) of the cases. Karyotyping, CMA, and whole-exome sequencing (WES) identified pathogenic genetic variants in 63, 68, and 1 case, respectively. The Cohen’s κ coefficient between karyotyping and CMA was 0.96, with a concordance of 98.0%. Of the 18 cases in which cryptic copy number variants &lt;5 Mb were detected by CMA, 17 were interpreted as variants of uncertain significance, and the remaining cases were interpreted as pathogenic. Trio exome sequencing revealed a pathogenic homozygous splice site mutation in the <i>PIGN</i> gene in a case undiagnosed by CMA and karyotyping. Our study demonstrated that chromosomal aneuploidy abnormalities are the main genetic cause of fetal CH. Based on this, we recommend karyotyping combined with rapid aneuploidy detection as a first-tier approach for the genetic diagnosis of fetal CH. WES and CMA could improve the diagnostic yield when routine genetic tests fail to determine the cause of fetal CH.
DOI: 10.6084/m9.figshare.29064041.v1
title: AF3 models of virus-virus, virus-host and host-host dimers from HSV-1 infected cells.

description: PPIs were uncovered by chemical cross-linking of intact HSV-1 infected cells at 24hpi with DSSO. Hetero-dimeric PPIs were additionally predicted by AlphaFold3 v.3.0.1 <sup>9</sup> on a local workstation utilizing an NVIDIA RTX A6000. Structure prediction was done in a docker environment with default parameters for protein-protein sequences generating 5 predicted models through 1 random seed, model parameters were provided by Google Deepmind.
DOI: 10.6084/m9.figshare.5103796.v2
title: Groundwater recharge in Africa data and code

description: Data and code to support the paper:<br>Cuthbert et al. (2019). Observed controls on resilience of groundwater to climate variability in sub-Saharan Africa. Nature.
DOI: 10.17632/985sfwcj9k
title: Updating data on the effects of COVID-19 pandemic on people's expectations about their future with mental health and psychosocial correlates variables

description: Present data are useful to investigate how the COVID-19 pandemic affected people’s mental health. The data were collected in Italy between April 1st and April 20th, 2020. The respondents participated in an online survey using the Qualtrics platform.
DOI: 10.17632/22xp3y97js
title: Supplemental material

description: Ability of three dairy feed evaluation systems to predict postruminal outflows of amino acids in dairy 3 cows: A meta-analysis
DOI: 10.17632/8wtn82v7wg
title: LC-MS/MS-QTOF dataset of chemical compounds detected in honey samples from Bali and Lombok, Indonesia.

description: The predominant bee species in Indonesia, namely Apis mellifera, Apis cerana, Apis dorsata, and Trigona species (stingless bee), are known for their high honey production throughout the country. Indonesia, particularly in regions like Bali and Lombok, is renowned for its rich biodiversity, providing abundant opportunities for these bee species to forage for nectar. This abundance of diverse plant species contributes to the high-quality honey they produce. This research analyzes the chemical compositions of wild honey samples collected from Bali and Lombok. The primary objective is to identify the specific chemical compounds within honey samples obtained from distinct regions of Bali and Lombok. In this study, two honey samples were collected from different regions of Bali, while one sample was collected from Lombok.
DOI: 10.17632/k3jtdt87x9
title: Amazon Mangroves

description: The dataset includes physical, chemical, and chronological analyses from sediment cores collected in mangroves northwest of the Amazon River mouth. The files contain data on bulk density, sedimentation rate, age models, mass accumulation, carbon and nitrogen content, stable isotope ratios, carbon and nitrogen accumulation rates, and ^210Pb-excess (in Bq/kg).
DOI: 10.17632/mpwryygc4r
title: Dataset concerning the Greek Smart Municipalities questionnaire

description: The dataset maps the digital transformation of Greek municipalities (2019).
DOI: 10.17632/v3b2ydj3wp
title: LINF_190008900

description: Sec22-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.6084/m9.figshare.13348439.v2
title: Pulmonary hypertension is attenuated and ventilation-perfusion matching is maintained during chronic hypoxia in deer mice native to high altitude.

description: Comparison between high-altitude versus low-altitude populations of deer mice, before and after chronic exposure to hypoxia in adulthood. SPECT-CT scanning was used to measure lung volume and various indices of ventilation-perfusion matching (log SDV, log SDQ, RDV, RDQ, Mean Log(V/Q), SD Log(V/Q), shunt perfusion, and dead space ventilation). Right ventricle systolic pressure (RVSP), right ventricle (RV) mass relative to left ventricle plus septum (LV+S), and smooth muscle (SM) thickness in pulmonary arterial vessels were also measured to evaluate hypoxic pulmonary hypertension. Additional details can be found in the associated publication: West et al. Pulmonary hypertension is attenuated and ventilation-perfusion matching is maintained during chronic hypoxia in deer mice native to high altitude.<br>
DOI: 10.6084/m9.figshare.25092686.v3
title: Data preprocessing program scripts

description: Data preprocessing program scripts
DOI: 10.6084/m9.figshare.28546346.v1
title: Dataset for "Thermoplasmonic polymersome membranes by in situ synthesis"

description: Dataset associated with "Thermoplasmonic polymersome membranes by in situ synthesis"
DOI: 10.6084/m9.figshare.4234850.v1
title: Data from: The Global Avian Invasions Atlas - A database of alien bird distributions worldwide

description: <b>GAVIA_main_data_table.csv</b> - This comma-separated text file contains the 27,723 alien bird records that form the core of the Global AVian Invasions Atlas (GAVIA) project. These records represent 971 species, introduced to 230 countries and administrative areas across all eight biogeographical realms, spanning the period 6000 BCE – AD 2014. The data comprises taxonomic (species-level), spatial (geographic location, realm, land type) and temporal (dates of introduction and spread) components, as well as details relating to the introduction event (how and why the species was introduced, whether or not it is established). Each line of data consists of an individual record concerning a specific alien bird species introduced to a specific location. The data derives from both published and unpublished sources, including atlases, country species lists, peer-reviewed articles, websites and via correspondence with in-country experts.<b>GAVIA_abbreviations.csv</b> - This comma-separated text file describes the abbreviations in the main text of the 'GAVIA_main_data_table.csv'.<b>GAVIA_column_names.csv</b> - This comma-separated text file describes the column heading used in the 'GAVIA_main_data_table.csv'. <b>GAVIA_references.csv </b>- This comma-separated text file contains the full references referred to in the 'GAVIA_main_data_table.csv' column headed "Reference".<b>GAVIA_rangemaps.zip</b> - This compressed folder (.zip format) contains the species’ range maps stored as one ESRI shapefile per species (n = 362). Within these shapefiles are attribute tables which contain a unique species ID number and binomial which match up to the species ID number and binomial in the 'GAVIA main data table'.
DOI: 10.6084/m9.figshare.4236470.v1
title: Supplementary Material for: The Effects of Early Postnatal Diuretics Treatment on Kidney Development and Long-Term Kidney Function in Wistar Rats

description: <b><i>Background:</i></b> Diuretics are administered to neonates to control fluid balance. We studied whether clinical doses affected kidney development and function and whether extrauterine growth retardation (EUGR) could be a modulator. <b><i>Methods:</i></b> Wistar rats were cross-fostered in normal food or food restricted litters at postnatal day (PND) 2 and treated daily with 0.9% NaCl, 5 mg/kg furosemide or 5 mg/kg hydrochlorothiazide (HCTZ) up to PND 8. Kidneys were evaluated on proliferation, apoptosis and a set of mRNA target genes at PND 8, glomerular- and glomerular generation count at PND 35, clinical pathology parameters at 3- and 9 months, neutrophil gelatinase-associated lipocalin at PND 8, 3 and 6 months, monthly blood pressure from 3 months onward and histopathology at study end. <b><i>Results:</i></b> Treatment with furosemide or HCTZ did not have relevant effects on measured parameters. EUGR resulted in lower body weight from day 3 onwards (-29% at weaning; p &lt; 0.001, -10% at necropsy; p &lt; 0.001), less glomerular generations (4.4 ± 0.32 vs. 5.0 ± 0.423; p = 0.025, males only), decreased glomerular numbers (27,861 ± 3,468 vs. 30,527 ± 4,096; p = 0.026), higher creatinine clearance (0.84 ± 0.1 vs. 0.77 ± 0.09 ml/min/kg; p = 0.047) at 3 months and lower plasma creatinine (25.7 ± 1.8 vs. 27.5 ± 2.8 µmol/l; p = 0.043) at 9 months. <b><i>Conclusion:</i></b> Furosemide and HCTZ did not influence kidney development or function when administered in a clinically relevant dose to rat pups at a stage of ongoing nephrogenesis. EUGR led to impaired kidney development but did not modify furosemide or HCTZ findings.
DOI: 10.17632/s98yc5d3jd
title: Tandem paired nicking promotes precise genome editing with scarce interference by p53. Hyodo et al.

description: Data and figures associated to a Cell Reports article "Tandem paired nicking promotes precise genome editing with scarce interference by p53" by Hyodo T et al.
DOI: 10.17632/z32dcj5sr9
title: Data for: Combined fluvoxamine and extended-release methylphenidate improved treatment response compared to fluvoxamine alone in patients with treatment-refractory obsessive-compulsive disorder: a randomized double-blind, placebo-controlled study

description: More effective, tolerable interventions for treatment-refractory obsessive-compulsive disorder (OCD) are needed. Preliminary findings encourage optimism that methylphenidate augmentation may be of benefit in the treatment of OCD. To test modulator methylphenidate (MPH) of extended-release formulations (MPH-ER) a safe and effective add-on therapy for refractory OCD, a pilot randomized, placebo-controlled, double-blind trial was conducted at an outpatient, single-center academic setting. Participants included 44 adults with serotonin reuptake inhibitor (SRI) treatment-refractory OCD and receiving a stable fluvoxamine pharmacotherapy with Yale-Brown Obsessive Compulsive Scale (Y-BOCS) scores higher than 20.
DOI: 10.6084/m9.figshare.19348058.v3
title: Pseudomized Twitter data- Origin and Destination Attachment indexes and Profile information

description: For more details, please refer to the following work: <br> <strong>Title:</strong> Origin and destination attachment: study of cultural integration on Twitter <br> Authors: Jisu Kim, Alina Sîrbu, Giulio Ressetti, Fosca Giannotti, and Hillel Rapoport <br> Work to be published at EPJ Data Science 2022 <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.25676466.v1
title: Data matrices

description: Raw data from paired SP/RA and RA/NET surveys