cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.et2h54
title: Occurrence Download

description: A dataset containing 4477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danaus plexippus (Linnaeus, 1758), Ammopelmatus muwu Rentz & Weissman, 1981, Haliotis cracherodii Leach, 1814, Actinemys marmorata (Baird & Girard, 1852), Rana draytonii Baird & Girard, 1852, Thamnophis hammondii (Kennicott, 1860))",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-121.3464 33.21473, -118.6325 33.21473, -118.6325 35.79518, -121.3464 35.79518, -121.3464 33.21473))"
 ]
}

 The dataset includes 4477 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009381-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27041980.v1
title: 原始data.rar

description: Firstly, sensitized GFP-E.coli and porcine erythrocytes were co-incubated, and green fluorescence was visible on the surface of porcine erythrocytes by indirect immunofluorescence. Finally, in the context of cardiopulmonary bypass, the association between porcine alveolar macrophages (PAMs) and porcine erythrocytes and GFP-E. coli was verified.
DOI: 10.6084/m9.figshare.16544730.v1
title: Jacksonia furcellata count data

description: Count data of emergence and survival over time of Jacksonia furcellata at a post pine and post mine site with different management practices and seed enhancement technologies
DOI: 10.15468/dl.gvjge2
title: Occurrence Download

description: A dataset containing 778835 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Year is 2002",
 "Month is September"
 ]
}

 The dataset includes 778835 records from 1221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009371-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24994973.v8
title: Pre-invasion assessment of potential invasive wood borers on North American tree species in Chinese sentinel gardens

description: Table S2 To maximize transparency and utility of the data, here we include the full record of wood borers and the colonized plant hosts. Vitality corresponds to tree scores evaluated by standards in Table S1. The 28S and COI represent the partial sequences of large subunit ribosomal RNA gene and the partial sequences of mitochondrial cytochrome c oxidase subunit I gene. Tissues correspond to the specific tissue colonized by the sampled wood borers. The IncidenceID corresponds to the supplementary folder names of the insect's images and sequences.Data for the manuscript titled "Pre-invasion assessment of potential invasive wood borers on North American tree species in Chinese sentinel gardens"<br>
DOI: 10.6084/m9.figshare.21593910.v1
title: Supplementary Material for: Musculoskeletal ultrasound evaluates renal injury and predicts renal outcome in patients with gout

description: Introduction. Kidney injury diagnosis is often delayed in patients with gout. We aimed to determine the characteristics of gout patients with CKD using musculoskeletal ultrasound (MSUS) and whether MSUS could be used as an auxiliary assessment to evaluate kidney injury and predict renal outcome in patients with gout. Methods. Clinical information, laboratory indicators and MSUS findings were collected and compared between gout-only patients (gout-CKD) and gout patients with CKD (gout+CKD). Multivariate logistic regression was applied to identify risk factors for clinical and MSUS characteristics in both groups. Correlation analysis between MSUS signs and kidney-related indicators was performed, and the effects of MSUS characteristics on renal prognosis were evaluated. Results. In total, 176 patients with gout were included, namely, 89 gout-CKD and 87 gout+CKD cases. After adjusting for confounders, the gout patients with CKD showed more frequent episodes in the previous year, higher ultrasound semiquantitative scores and more tophi than gout patients without CKD. Additionally, the number of tophi, bone erosion and synovial hypertrophy measured by MSUS were found to be negatively correlated with the eGFR. The existence of tophi was independently associated with an increased risk of a ≥10% decline in eGFR in the first-year follow-up (OR 3.56, 95% CI 1.382-9.176). Conclusions. Ultrasound-detected tophi, bone erosion and synovial hypertrophy were associated with kidney injury in gout patients. The existence of tophi was associated with faster renal function deterioration. MSUS could be a potential auxiliary diagnostic method to evaluate kidney injury and predict renal outcome in gout patients.
DOI: 10.6084/m9.figshare.25999873.v1
title: Supplemental Material - Mechanical behavior of triceps surae muscles in vivo

description: Supplemental Material for the publication "Shear wave elastography reveals passive and active mechanics of triceps surae muscles in vivo: From shear modulus-ankle angle to stress-strain characteristics" by Manuela Zimmer, Louis Straub, and Filiz Ates, submitted to the Journal of Applied Physiology.The files include"US_SWE_examples.zip": Exemplary ultrasound videos (B-mode and SWE) from one participant at two ankle angles (30° PF and 0° PF) from each muscle and each condition studied in this work. The videos are provided in .avi format."Supplemental_Table_S1_deep_pennation_angle.xlsx": Results for the deep pennation angles obtained from the B-mode videos."Supplemental_Table_S2_superficial_pennation_angle.xlsx": Results for the superficial pennation angles obtained from the B-mode videos."Supplemental_Table_S3_fascicle_length.xlsx": Results for the fascicle lengths obtained from the B-mode videos."Supplemental_Table_S4_SWE.xlsx": Results for the shear modulus obtained from the SWE videos.Please refer to the manuscript for details of the methodologies, experimental protocol, and data analysis.
DOI: 10.17632/pmft7w5sft
title: Kern River Fields Geology, Infrastructure, and Trace Gases

description: Google Earth archive of Mako thermal infrared hyperspectral airborne imaging spectroscopy detections for carbon dioxide (CO2), methane (CH4), and ammonia (NH3) plume, key field infrastructure, oil field outlines, geology including faults and reservoir formation depth, and earthquakes 1952-2020.
DOI: 10.6084/m9.figshare.1111884.v1
title: Three principles to understand cognition

description: I think that the main reason why we do not understand the general principles ofhow cognition works, is not the excessive complexity of cognitive phenomena, but the lack of the conceptual and methodological tools to properly address the problem. In this paper I show three principles that could be proposed asfoundation of cognitive processes. I also briefly show some points on the toolsthat I think it is necessary to develop for this purpose
DOI: 10.6084/m9.figshare.28788437.v1
title: 20241224-1651-50_ODMR_data_ch0_raw.dat

description: This is the raw ODMR data of a diamond containing NV ensemble. It consists of ODMR sweeps under the magnetic fields produced by a high current.
DOI: 10.6084/m9.figshare.12581048.v1
title: GWAS datasets of HQLA-HB AIL population

description: These files contains the phenotypes and genotypes of HQLA-HB AIL chicken individuals.<br>
DOI: 10.6084/m9.figshare.21763694.v1
title: S2 File. Dataset

description: Suplementary information for a manuscript in progress submitted to PLOS ONE Journal (PONE-D-22-21934)
DOI: 10.6084/m9.figshare.25007294.v1
title: Merged NCES Academic Library Survey Data 1996 - 2018

description: This data set consists of data on academic libraries in the United States from 1996-2018. Multiple data sources from the National Center for Education Statistics (NCES) were merged. File Format: csvFile Size: 26648 KBLanguage: EnglishCoverage: Time period covered: 1996-2018.<b>Codebook</b>: See the codebook for Merged NCES Academic Library Survey 1996 - 2016 Dataset, which is included as a supplemental file here: https://digitalscholarship.unlv.edu/lib_datasets/1/<b>Sources: </b>All data sources were downloaded from the National Center for Education Statistics website https://nces.ed.gov/. Individual datasets and years accessed are listed below.[dataset] U.S. Department of Education, National Center for Education Statistics, Academic Libraries component, Integrated Postsecondary Education Data System (IPEDS), (2018, 2016, 2014), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7[dataset] U.S. Department of Education, National Center for Education Statistics, Academic Libraries Survey (ALS) Public Use Data File, Library Statistics Program, (2012, 2010, 2008, 2006, 2004, 2002, 2000, 1998, 1996), https://nces.ed.gov/surveys/libraries/aca_data.asp[dataset] U.S. Department of Education, National Center for Education Statistics, Institutional Characteristics component, Integrated Postsecondary Education Data System (IPEDS), (2018, 2016, 2014), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7[dataset] U.S. Department of Education, National Center for Education Statistics, Fall Enrollment component, Integrated Postsecondary Education Data System (IPEDS), (2018, 2016, 2014, 2012, 2010, 2008, 2006, 2004, 2002, 2000, 1998, 1996), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7[dataset] U.S. Department of Education, National Center for Education Statistics, Human Resources component, Integrated Postsecondary Education Data System (IPEDS), (2018, 2016, 2014, 2012, 2010, 2008, 2006), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7[dataset] U.S. Department of Education, National Center for Education Statistics, Employees Assigned by Position component, Integrated Postsecondary Education Data System (IPEDS), (2004, 2002), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7[dataset] U.S. Department of Education, National Center for Education Statistics, Fall Staff component, Integrated Postsecondary Education Data System (IPEDS), (1999, 1997, 1995), https://nces.ed.gov/ipeds/datacenter/login.aspx?gotoReportId=7
DOI: 10.17632/779vdgfmvm
title: Randomized controlled trial One anasthomosis gastric bypass

description: This study was conducted from January 2015 to January 2017 in the Department of General and Emergency surgery of "A. Rizzoli" Hospital, Lacco Ameno Naples, Italy. All the surgeries were performed by the same surgeon. Patients were randomized into 3 groups based on the length of the BPL measured from the ligament of Traits: Group A 150 cm, Group B 180 cm, and Group C 200 cm. Early results were obtained at 2 years follow-up. The primary aim was to compare weight loss outcomes of OAGB-200 cm BPL (Group A) and OAGB-150 cm BPL (Group B). The secondary aim was to compare co-morbidity resolution outcomes, nutritional parameters, and morbidity/mortality of the three procedures.
DOI: 10.6084/m9.figshare.22006802.v1
title: RAW IV Curve Data

description: The measured values of current and voltage in a .CSV file as measured by the IV Curve tracer
DOI: 10.17632/5sdn7h4npk
title: Data for: Experiment and MCNP simulation of a portable tagged neutron inspection system for detection of explosives in a concrete wall
DOI: 10.6084/m9.figshare.27159459.v1
title: Date for the research of <b>The Humanity Paradox: Unraveling the Power of Animosity in </b><b>Leading </b><b>Boycotts—</b><b>Evidence from</b><b> Egypt</b>

description: This research investigates the impact of consumer animosity on brand attitudes and boycott intentions in Egypt, involving a survey of 336 consumers. It explores how animosity influences consumer perceptions of brands and their intentions to boycott, considering factors like xenocentrism and materialism. The study highlights the need to understand consumer behavior amid geopolitical tensions and economic conditions.
DOI: 10.6084/m9.figshare.19799134.v1
title: Fauna data Vráble

description: Fauna data Vráble
DOI: 10.6084/m9.figshare.4975220.v1
title: Dataset for: Bias and inference from misspecified mixed effect models in stepped wedge trial analysis

description: Many stepped wedge trials (SWTs) are analysed using a mixed-effect model with a random intercept and fixed-effects for intervention and time-periods (referred to here as the standard model). However, it is not known whether this model is robust to misspecification. We simulated SWTs with three groups of clusters and two time-periods; one group received the intervention during the first period, and two groups in the second period. We simulated period and intervention effects that were either common-to-all or varied-between clusters. Data were analysed with the standard model, or with additional random effects for period effect or intervention effect. In a second simulation study, we explored the weight given to within-cluster comparisons by simulating a larger intervention effect in the group of the trial that experienced both the control and intervention conditions and applying the three analysis models described previously. Across 500 simulations we computed bias and confidence interval coverage of the estimated intervention effect. We found up to 50% bias in intervention effect estimates when period or intervention effects varied between clusters and were treated as fixed effects in the analysis. All misspecified models showed under-coverage of 95% confidence intervals, particularly the standard model. A large weight was given to within-cluster comparisons in the standard model. In the SWTs simulated here, mixed effect models were highly sensitive to departures from the model assumptions, which can be explained by the high dependence on within-cluster comparisons. Trialists should consider including a random effect for time-period in their SWT analysis model.
DOI: 10.6084/m9.figshare.8006585.v5
title: Data sharing in primary human GWAS studies

description: Results of a manual check of 1799 articles returned from a GWAS (genome-wide association study) search to see whether they were primary human GWAS studies and, if so, if they shared their full GWAS summary statistics. From the paper:<br>Thelwall M, Munafò M, Mas-Bleda A, Stuart E, Makita M, Weigert V, et al. (2020) Is useful research data usually shared? An investigation of genome-wide association study summary statistics. PLoS ONE 15(2): e0229578. https://doi.org/10.1371/journal.pone.0229578<br>
DOI: 10.25387/g3.20092538.v2
title: Supplemental Material for Dyson et al., 2022

description: <strong>Supporting data for "Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective population sizes"</strong> Authors Carl J. Dyson; Aaron Pfennig; Daniel Ariano-Sánchez; Joseph Lachance; Joseph R. Mendelson III; Michael A. D. Goodisman<br> Summary We sequenced the genome of a male Guatemalan Beaded Lizard from Zoo Atlanta using PacBio Sequel II SMRTCell sequencing platform. Sequencing insert libraries were created consisting of 15-20 kb sequences and 30+ kb sequences, and underwent on-site quality assessment and cleanup prior to sequencing. We obtained 232 Gbp of raw sequencing data (86x depth). The raw reads were assembled into a draft genome with a total length of 2.31 Gb. The assembly comprised 3,551 contigs, 83% of which were 50 kb or larger in size. Evaluation of the draft assembly produced a contig N50 of 1,358,783 bp. The overall GC content of the genome was estimated to be 45.05%. Approximately 57.54% of the genome consisted of identifiable repetitive DNA. We predicted 31,411 protein-coding genes and 32,205 distinct mRNAs. This draft genome of this critically endangered species can contribute to conservation efforts by providing information on historical changes in population size, and help further our understanding of an understudied taxon within the venomous lizards. Files <strong>Heloderma_charlesbogerti_genomic.fasta.gz:</strong> Assembled genome sequences of Heloderma charlesbogerti using Flye. <strong>Heloderma_charlesbogerti_genomic.gff.gz:</strong> Gene features in GFF format. Protein-coding genes were predicted by BRAKER2 and tRNA genes by tRNAscan-SE2. <strong>Heloderma_charlesbogerti_cds_from_genomic.fna.gz:</strong> Nucleotide sequences of predicted protein-coding regions, <strong>Heloderma_charlesbogerti_protein.faa.gz:</strong> Amino acid sequences of predicted protein-coding regions, <strong>Heloderma_charlesbogerti_protein.interproscan.gff.gz:</strong> Interproscan annotations of predicted proteins in GFF format. <strong>Heloderma_charlesbogerti_protein.interproscan.tsv.gz:</strong> Interproscan annotations of predicted proteins in tab-separated format. <strong>Heloderma_charlesbogerti_RepeatMasker.gff.gz:</strong> Repeat annotation in GFF format. Repeat annotation was done de novo using RepeatModeler and RepeatMasker. <strong>Heloderma_charlesbogerti_RepeatMasker.out.gz:</strong> RepeatMasker annotation. <strong>Heloderma_charlesbogerti_RepeatMasker.tbl.gz:</strong> Summary of RepeatMasker annotation. <strong>Heloderma_charlesbogerti_TRF.gff.gz:</strong> Long tandem repeat anotation using TRF. <strong>Heloderma_charlesbogerti_genomic_softmasked.fasta.gz:</strong> Softmasked genome sequences of Heloderma charlesbogerti. Combined annotation of RepeatMasker and TRF were used for softmasking.
DOI: 10.6084/m9.figshare.28715615.v1
title: ncRNA.zip

description: <b>ncRNA (non-coding RNA) </b><b>predicted by</b><b> CPC2 (v 0.1) and PINC for 25 </b><b>grassland plant species.</b><b>Species list:</b>Species_code Species_nameGerPra Geranium pratenseLeuVul Leucanthemum vulgare agg.TriFla Trisetum flavescensLotCor Lotus corniculatusCreBie Crepis biennisBelPer Bellis perennisDauCar Daucus carotaPruVul Prunella vulgarisTriPra Trifolium pratensePriVer Primula verisHolLan Holcus lanatusAloPra Alopecurus pratensisGalMol Galium mollugo agg.KnaArv Knautia arvensisMedVar Medicago x variaPlaLan Plantago lanceolataLuzCam Luzula campestrisVerCha Veronica chamaedrysArrEla Arrhenatherum elatiusTriDub Trifolium dubiumLatPra Lathyrus pratensisVicCra Vicia craccaRanAcr Ranunculus acrisPlaMed Plantago mediaAjuRep Ajuga reptans<br><b>Analyse pseudo code:</b>## CPC2for i in {01..25}; do# the number corresponding to a particular speciespython path/to/CPC2_standalone-1.0.1/bin/CPC2.py -i path/to/isoSeqData/BMK230426-BJ202-01P00$i.flnc.clustered.isoforms.fa -o BMK230426-BJ202-01P00$idone<br>## PINC was executed using a Docker imagepython pinc.py -f path/to/isoSeqData/BMK230426-BJ202-01P00$i.flnc.clustered.isoforms.fa
DOI: 10.6084/m9.figshare.19971278.v1
title: SML and SSW DATA.xlsx

description: This document has provided the first data set that considers the distributions of CDOM, FDOM, DOC, and Chl-<em>a</em> in the SML and SSW of the ECS and the YS during spring, summer, and winter.
DOI: 10.6084/m9.figshare.28785314.v2
title: Sample IDs selected for analysis

description: Visual exploratory analysis of Taxa‐Function relationships in fecal samples from Inflammatory Bowel Disease (IBD) and Crohn's Disease (CD) patients and healthy controlsWe used stratified taxonomic and functional profiles from the gut microbiome of fecal samples of patients with Crohn’s Disease (CD) or Inflammatory Bowel Disease (IBD) as well as healthy subjects without any disease from (Schirmer et al., 2017).
DOI: 10.17632/d2f2bdzkty
title: Atmospheric corrosion in the Canary Islands (Spain)

description: Local environmental conditions (time of wetness (hours/year), average Cl- and SO2 depositions (mg/(m2·day))) at the 74 corrosion exposure sites determined during 3 years in the Canary Islands
DOI: 10.6084/m9.figshare.25427527.v1
title: Supplementary Material for: Oral Rinses: Some Kill and Some Cripple Candida albicans

description: Objectives: Oral healthcare professionals play a crucial role in guiding patients toward evidence-based choices among the many available oral rinses. In this study, we explored how specific oral rinse formulations affect the viability and modulate critical virulence traits of the opportunistic fungal pathogen Candida albicans. Materials and Methods: We assessed the effects of these oral rinses on the production of germ tube, production of phospholipase and hemolysin, as well as biofilm formation. Results: We found that oral rinses containing cetylpyridinium chloride (CPC) and chlorhexidine (CHX) showed the greatest fungicidal activity with the lowest MFCs (0.38% and 0.78%, respectively). Oral rinses based on zinc chloride and sodium fluoride with Miswak bark extract (MIS) or essential oils (EO) had much lower fungicidal activity (8-16 times lower) compared to CHX and CPC. However, they had a significantly greater impact on the virulence traits of C. albicans. They reduced germ tube production by 86% - 89% (versus 42% for CHX and 29% for CPC), completely inhibited phospholipase and hemolysin production, and together with the CPC-based oral rinse, exerted the greatest reductions in biofilm formation across all tested concentrations. This was in contrast to both the controls and CHX, which had a minimal effect on biofilm formation. Conclusion: By inhibiting the virulence factors the oral rinse can have a crippling effect on C. albicans, weakening this opportunistic pathogen and hindering its potential to cause infection.
DOI: 10.6084/m9.figshare.7637288.v1
title: Managing and Sharing Qualitative Data

description: This is a hands-on workshop on the management of qualitative social science data, with a focus on data sharing and transparency. While the workshop addresses data management throughout the lifecycle – from data management plan to data sharing – its focus is on the particular challenges in sharing qualitative data and in making qualitative research transparent. One set of challenges concerns the ethical and legal concerns in sharing qualitative data. We will consider obtaining permissions for sharing qualitative data from human participants, strategies for (and limits of) de-identifying qualitative data, and options for restricting access to sensitive qualitative data. We will also briefly look at copyright and licensing and how they can inhibit the public sharing of qualitative data. A second set of challenges concerns the lack of standardized guidelines for making qualitative research processes transparent. Following on some of the themes touched on in the talk, we will jointly explore some cutting edge approaches for making qualitative research transparent and discuss their potentials as well as shortcomings for different forms of research.
DOI: 10.17632/t3xr5j67fd
title: Calculus Video Worked Example Data

description: Summary data from a Calculus II class where students were required to watch an instructional video before or after lecture. Dataset includes gender (1=female; 2=male), vgroup (-1=before lecture; 1=after lecture), binary flag for 26 individual videos (1=watched 80% or more of length of video; 0=not watched), videosum (sum of number of videos watched), final_raw (raw grade student received on cumulative final course exam), sat_math (scaled SAT-Math score out of 800), math_place (institutional calculus readiness score out of 100), watched20 (grouping flag for students who watched 20 or more videos).
DOI: 10.17632/zrcjnyc9xj
title: To Determine the LDL Phenotype with Lipids

description: Plasma lipid lipoprotein and sdLDL data of coronary artery patients
DOI: 10.17632/9bpcypmh2j
title: High-resolution Digital Outcrop Models of Late Jurassic outcrop, Wadi Birk, Saudi Arabia

description: The catalog represents supplementary materials for:
Panara, Y., Menegoni, N., Finkbeiner, T., Zühlke, R., Vahrenkamp, V., 2024. High-resolution analysis of 3D fracture networks from Digital Outcrop Models, correlation to plate-tectonic events and calibration of subsurface models (Jurassic, Arabian Plate). Mar. Pet. Geol. https://doi.org/10.1016/j.marpetgeo.2024.106998