cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18132495.v1
title: Additional file 12 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 12: Table S10. List of cis-regulatory elements (CREs) present in the promoter region of identified LchiWRKYs.
DOI: 10.6084/m9.figshare.12365063.v1
title: Additional file 15 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 15: Table S12. Characteristics of the high-density genetic linkage map.
DOI: 10.6084/m9.figshare.12365114.v1
title: Additional file 9 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 9: Table S8. Library pooling and data metrics in group G with 6 rice RNA-seq libraries pooled.
DOI: 10.6084/m9.figshare.6073649
title: S. peregrina transcriptome analyses: annotation by GO

description: The dataset contains functional annotations and gene coding sequence annotations for S. peregrina. There are six annotation files: four functional annotation files and two structural annotation files. The four functional annotation files are the GO, KEGG, UniProt database annotation files and OrthoMCL results file of S. peregrina and D. melanogaster.
DOI: 10.6084/m9.figshare.17083814.v1
title: Additional file 3 of Genome-wide identification and expression profiling of invertase gene family for abiotic stresses tolerance in Poncirus trifoliata

description: Additional file 3. The Ct values and qPCR’s raw data used to construct expression profiles of PtrINV genes in P. trifoliata.
DOI: 10.6084/m9.figshare.17083736.v1
title: Additional file 2 of Comparative and phylogenetic analyses of eleven complete chloroplast genomes of Dipterocarpoideae

description: Additional file 2: Table S1. Codon content of 20 amino acids and stop codons in Dipterocarpoideae.
DOI: 10.6084/m9.figshare.18132510.v1
title: Additional file 16 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 16: Table S14. Standardization data of qRT-PCR conditions for cold stress.
DOI: 10.6084/m9.figshare.18132513
title: Additional file 17 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 17: Table S15. Standardization data of qRT-PCR conditions for heat stress.
DOI: 10.6084/m9.figshare.18132510
title: Additional file 16 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 16: Table S14. Standardization data of qRT-PCR conditions for cold stress.
DOI: 10.6084/m9.figshare.12365081
title: Additional file 2 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 2: Table S1. Data metrics from sequencing of 14 rice libraries prepared using AIO-seq method.
DOI: 10.6084/m9.figshare.11840793.v1
title: Additional file 1 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 1: Table S1. Distribution of BPA genes across the tree of life.
DOI: 10.6084/m9.figshare.11840793
title: Additional file 1 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 1: Table S1. Distribution of BPA genes across the tree of life.
DOI: 10.6084/m9.figshare.12365084.v1
title: Additional file 3 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 3: Table S2. Library pooling and data metrics in group C with 30 rice libraries pooled.
DOI: 10.6084/m9.figshare.18132255.v1
title: Additional file 4 of A scaffold-level genome assembly of a minute pirate bug, Orius laevigatus (Hemiptera: Anthocoridae), and a comparative analysis of insecticide resistance-related gene families with hemipteran crop pests

description: Additional file 4 Protein sequences of Orius laevigatus insecticide resistance genes. (.xlsx file)
DOI: 10.6084/m9.figshare.12365084
title: Additional file 3 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 3: Table S2. Library pooling and data metrics in group C with 30 rice libraries pooled.
DOI: 10.6084/m9.figshare.18132516
title: Additional file 18 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 18: Table S16. Standardization data of qRT-PCR conditions for drought stress.
DOI: 10.6084/m9.figshare.11840799
title: Additional file 2 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 2: Table S2. Distribution of ACD11 genes across the tree of life.
DOI: 10.6084/m9.figshare.11840799.v1
title: Additional file 2 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 2: Table S2. Distribution of ACD11 genes across the tree of life.
DOI: 10.6084/m9.figshare.21275840
title: Additional file 2 of Development and validation of an MRI-based radiomic model for predicting overall survival in nasopharyngeal carcinoma patients with local residual tumors after intensity-modulated radiotherapy

description: Additional file 2. Radscore and outcome for each patient
DOI: 10.6084/m9.figshare.18132522
title: Additional file 1 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 1: Table S1. Physicochemical properties and chromosomal details of LchiWRKY proteins.
DOI: 10.6084/m9.figshare.18132522.v1
title: Additional file 1 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 1: Table S1. Physicochemical properties and chromosomal details of LchiWRKY proteins.
DOI: 10.5281/zenodo.10669535
title: T-Matrix results for spheroids representing mineral dust at four different wavelengths

description: The dataset contains T-Matrix results for spheroids representing mineral dust aerosol at wavelengths of 355 nm, 532 nm, 910.6 nm, and 1064 nm. Please see the README file for more information.
DOI: 10.5281/zenodo.10669536
title: T-Matrix results for spheroids representing mineral dust at four different wavelengths

description: The dataset contains T-Matrix results for spheroids representing mineral dust aerosol at wavelengths of 355 nm, 532 nm, 910.6 nm, and 1064 nm. Please see the README file for more information.
DOI: 10.6084/m9.figshare.12365099.v1
title: Additional file 6 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 6: Table S5. Library pooling and data metrics in group F with seven tea libraries pooled.
DOI: 10.6084/m9.figshare.11840811
title: Additional file 4 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 4: Table S4. List of 47 genomes surveyed in this study.
DOI: 10.6084/m9.figshare.11840811.v1
title: Additional file 4 of Genome-wide identification and molecular evolution analysis of BPA genes in green plants

description: Additional file 4: Table S4. List of 47 genomes surveyed in this study.
DOI: 10.6084/m9.figshare.12365096.v1
title: Additional file 2 of Identification of lysine acetylome in cervical cancer by label-free quantitative proteomics

description: Additional file 2: Table S2. A total of 1547 proteins were identified by label-free quantitative proteomics
DOI: 10.6084/m9.figshare.12365105
title: Additional file 7 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 7: Table S6. Chi square test in group E with 32 libraries pooled.
DOI: 10.6084/m9.figshare.6073646.v1
title: S. peregrina transcriptome analyses: OrthoMCL results

description: The dataset contains functional annotations and gene coding sequence annotations for S. peregrina. There are six annotation files: four functional annotation files and two structural annotation files. The four functional annotation files are the GO, KEGG, UniProt database annotation files and OrthoMCL results file of S. peregrina and D. melanogaster.
DOI: 10.6084/m9.figshare.12365114
title: Additional file 9 of All-in-one sequencing: an improved library preparation method for cost-effective and high-throughput next-generation sequencing

description: Additional file 9: Table S8. Library pooling and data metrics in group G with 6 rice RNA-seq libraries pooled.
DOI: 10.6084/m9.figshare.18132279.v1
title: Additional file 6 of METTL3 promotes colorectal carcinoma progression by regulating the m6A–CRB3–Hippo axis

description: Additional file 6. mRNA quantity level in colorectal carcinoma vs. normal tissue.
DOI: 10.6084/m9.figshare.17083742.v1
title: Additional file 3 of Comparative and phylogenetic analyses of eleven complete chloroplast genomes of Dipterocarpoideae

description: Additional file 3: Table S2. Estimates of Evolutionary Divergence between Sequences.
DOI: 10.6084/m9.figshare.5549611
title: Molecular response of gall induction by aphid <i>Schlechtendalia chinensis</i> (Bell) attack on <i>Rhus chinensis</i> Mill

description: Horned gall is named after its shape of irregular diamond, and is induced by the fluid-feeding aphid <i>Schlechtendalia chinensis</i> (Bell) attacks on the leaflets that are located in the branchlets of <i>Rhus chinensis</i> Mill., which is enriched in gallotannin and can be widely used in medicine and the food industry. To explain the molecular mechanism of gall development, we performed transcriptome analysis by Illumina deep sequencing and digital gene expression of four tissues, including galls, leaves that grew on the same branch as the gall taken (GL), leaves from a branch without any gall (LW), and leaves from a tree without any gall (CL). Differentially expressed genes abundantly enriched in the biosynthesis of secondary metabolites, plant–aphid interactions, and plant hormone signal transduction were highly expressed in galls compared with GL and LW. Phytohormone signal transduction, dominated by IAA and ABA, coordinates primary and secondary metabolism and thus induces gall induction and development after attack by aphids. This study provides a theoretical basis for the genetic improvement and processing of gallnut resources.
DOI: 10.6084/m9.figshare.18132528.v1
title: Additional file 21 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 21: Table S18. Mapping rate of reference genome used for RNA-seq of three stress experiments.
DOI: 10.6084/m9.figshare.18132555.v1
title: Additional file 5 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 5: Table S5. Chromosome length and location of LchiWRKYs.
DOI: 10.6084/m9.figshare.18132558
title: Additional file 6 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 6: Table S6. List of tandem replicated LchiWRKYs.
DOI: 10.6084/m9.figshare.18132276
title: Additional file 5 of METTL3 promotes colorectal carcinoma progression by regulating the m6A–CRB3–Hippo axis

description: Additional file 5. mRNA methylation level in colorectal carcinoma vs. normal tissue.
DOI: 10.6084/m9.figshare.6073649.v1
title: S. peregrina transcriptome analyses: annotation by GO

description: The dataset contains functional annotations and gene coding sequence annotations for S. peregrina. There are six annotation files: four functional annotation files and two structural annotation files. The four functional annotation files are the GO, KEGG, UniProt database annotation files and OrthoMCL results file of S. peregrina and D. melanogaster.
DOI: 10.6084/m9.figshare.18132279
title: Additional file 6 of METTL3 promotes colorectal carcinoma progression by regulating the m6A–CRB3–Hippo axis

description: Additional file 6. mRNA quantity level in colorectal carcinoma vs. normal tissue.
DOI: 10.6084/m9.figshare.12365183
title: Additional file 8 of Genomic characterization of a newly established esophageal squamous cell carcinoma cell line from China and published esophageal squamous cell carcinoma cell lines

description: Additional file 8: Table S7. SNA data of 28 ESCC cell lines.
DOI: 10.6084/m9.figshare.18132361
title: Additional file 1 of Artificial intelligence framework identifies candidate targets for drug repurposing in Alzheimer’s disease

description: Additional file 1.
DOI: 10.6084/m9.figshare.16557260.v1
title: Additional file 6 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 6: Table S6. Compare of DSGs between Xiang and Large White pigs.
DOI: 10.6084/m9.figshare.16557251.v1
title: Additional file 3 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 3: Table S3. The KEGG and GO enrichment for DEGs and DSGs of Xiang pig and the compares with Yorkshire pig.
DOI: 10.6084/m9.figshare.12365171
title: Additional file 5 of Genomic characterization of a newly established esophageal squamous cell carcinoma cell line from China and published esophageal squamous cell carcinoma cell lines

description: Additional file 5: Table S4. CNA data of CSEC216.
DOI: 10.6084/m9.figshare.12365171.v1
title: Additional file 5 of Genomic characterization of a newly established esophageal squamous cell carcinoma cell line from China and published esophageal squamous cell carcinoma cell lines

description: Additional file 5: Table S4. CNA data of CSEC216.
DOI: 10.6084/m9.figshare.16557245.v1
title: Additional file 1 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 1: Table S1. Primers for validation of DEGs and DSGs.
DOI: 10.6084/m9.figshare.16557248.v1
title: Additional file 2 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 2: Table S2. The expressed genes in the ovaries of Xiang pig with large and small litter size.
DOI: 10.6084/m9.figshare.16557257.v1
title: Additional file 5 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 5: Table S5. The DSG analysis by rMATs.
DOI: 10.6084/m9.figshare.18132534
title: Additional file 23 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 23: Table S20. All DEGs TPM values from three stress experiments.
DOI: 10.6084/m9.figshare.16557257
title: Additional file 5 of Differences in gene expression and variable splicing events of ovaries between large and small litter size in Chinese Xiang pigs

description: Additional file 5: Table S5. The DSG analysis by rMATs.
DOI: 10.6084/m9.figshare.17083811
title: Additional file 2 of Genome-wide identification and expression profiling of invertase gene family for abiotic stresses tolerance in Poncirus trifoliata

description: Additional file 2: Table S2. Accession numbers of all invertase genes from 5 plant species used in this article.
DOI: 10.6084/m9.figshare.18132513.v1
title: Additional file 17 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 17: Table S15. Standardization data of qRT-PCR conditions for heat stress.
DOI: 10.6084/m9.figshare.12365177.v1
title: Additional file 7 of Genomic characterization of a newly established esophageal squamous cell carcinoma cell line from China and published esophageal squamous cell carcinoma cell lines

description: Additional file 7: Table S6. CNA data of 24 ESCC cell lines.
DOI: 10.6084/m9.figshare.18132552.v1
title: Additional file 4 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 4: Table S4. The Gene ID and corresponding subgroup information and rooted species tree of WRKY family of 17 species.
DOI: 10.6084/m9.figshare.18132525.v1
title: Additional file 20 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 20: Table S17. RNA-seq quality data for three stress experiments.
DOI: 10.6084/m9.figshare.18132534.v1
title: Additional file 23 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 23: Table S20. All DEGs TPM values from three stress experiments.
DOI: 10.6084/m9.figshare.18132573
title: Additional file 9 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 9: Table S8. Number and length of LchiWRKY exons and introns.
DOI: 10.6084/m9.figshare.17083814
title: Additional file 3 of Genome-wide identification and expression profiling of invertase gene family for abiotic stresses tolerance in Poncirus trifoliata

description: Additional file 3. The Ct values and qPCR’s raw data used to construct expression profiles of PtrINV genes in P. trifoliata.
DOI: 10.6084/m9.figshare.18132552
title: Additional file 4 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 4: Table S4. The Gene ID and corresponding subgroup information and rooted species tree of WRKY family of 17 species.
DOI: 10.6084/m9.figshare.12365147.v1
title: Additional file 2 of Genomic characterization of a newly established esophageal squamous cell carcinoma cell line from China and published esophageal squamous cell carcinoma cell lines

description: Additional file 2: Table S2. Background information of CCLE ESCC cell lines.
DOI: 10.6084/m9.figshare.18132555
title: Additional file 5 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 5: Table S5. Chromosome length and location of LchiWRKYs.
DOI: 10.6084/m9.figshare.18132403
title: Additional file 1 of Modification of mesenchymal stem cells by HMGB1 promotes the activity of Cav3.2 T-type calcium channel via PKA/β-catenin/γ-cystathionase pathway

description: Additional file 1: Microarray data.
DOI: 10.6084/m9.figshare.18132403.v1
title: Additional file 1 of Modification of mesenchymal stem cells by HMGB1 promotes the activity of Cav3.2 T-type calcium channel via PKA/β-catenin/γ-cystathionase pathway

description: Additional file 1: Microarray data.
DOI: 10.6084/m9.figshare.18132558.v1
title: Additional file 6 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 6: Table S6. List of tandem replicated LchiWRKYs.
DOI: 10.6084/m9.figshare.18132561.v1
title: Additional file 7 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 7: Table S7. Motifs identified in the LchiWRKYs.
DOI: 10.6084/m9.figshare.18132492
title: Additional file 11 of Genome-wide identification of the Liriodendron chinense WRKY gene family and its diverse roles in response to multiple abiotic stress

description: Additional file 11: Table S9. Domain sequence and groups of LchiWRKYs.
DOI: 10.6084/m9.figshare.6073952
title: Forensic investigation of 23 autosomal STRs and application in Han and Mongolia ethnic groups

description: A forensic validation study of the Early Access Huaxia™ Platinum Polymerase Chain Reaction (PCR) kit was completed to document the performance capabilities and limitations. The genotyping of DNA samples was consistent across a large range of template DNA concentrations, with complete profiles obtained at 0.125 ng; however, no more than 2 mm × 1.2 mm punches of samples would be recommended for direct amplification. The size precision and accuracy test revealed the genotyping ability; while consistent results were obtained when comparing the kit with other commercially available systems. In addition, the whole PCR amplification can finish within approximately 45 min, making the system suitable for fast-detection. However, only partial profiles may be obtained with challenging samples, including DNA stored on Foam-Tipped Applicators (FTA) cards or some case samples. For the forensic application in ethnic groups, a total of 282 and 229 alleles were obtained in Han and Mongolia, respectively. Since the 23 short tandem repeats were independent from each other, the cumulative power of exclusion in duos was 0.999 999 157 188 and the cumulative power of exclusion in trios was 0.999 999 999 859 in the Han group while the cumulative power of exclusion in duos (CPE<sub>duo</sub>) was 0.999 998 848 26 and cumulative power of exclusion in trios (CPE<sub>trio</sub>) was 0.999 999 999 79 in the Mongolia group. And good internal consistency was found between the two investigated groups and the Sichuan Han, Hui, Tibetan and Uygur according to available reference data.
DOI: 10.6084/m9.figshare.6073952.v1
title: Forensic investigation of 23 autosomal STRs and application in Han and Mongolia ethnic groups

description: A forensic validation study of the Early Access Huaxia™ Platinum Polymerase Chain Reaction (PCR) kit was completed to document the performance capabilities and limitations. The genotyping of DNA samples was consistent across a large range of template DNA concentrations, with complete profiles obtained at 0.125 ng; however, no more than 2 mm × 1.2 mm punches of samples would be recommended for direct amplification. The size precision and accuracy test revealed the genotyping ability; while consistent results were obtained when comparing the kit with other commercially available systems. In addition, the whole PCR amplification can finish within approximately 45 min, making the system suitable for fast-detection. However, only partial profiles may be obtained with challenging samples, including DNA stored on Foam-Tipped Applicators (FTA) cards or some case samples. For the forensic application in ethnic groups, a total of 282 and 229 alleles were obtained in Han and Mongolia, respectively. Since the 23 short tandem repeats were independent from each other, the cumulative power of exclusion in duos was 0.999 999 157 188 and the cumulative power of exclusion in trios was 0.999 999 999 859 in the Han group while the cumulative power of exclusion in duos (CPE<sub>duo</sub>) was 0.999 998 848 26 and cumulative power of exclusion in trios (CPE<sub>trio</sub>) was 0.999 999 999 79 in the Mongolia group. And good internal consistency was found between the two investigated groups and the Sichuan Han, Hui, Tibetan and Uygur according to available reference data.