cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccb0t59
title: CCDC 298690: Experimental Crystal Structure Determination

description: Related Article: G.Kumaraswamy, M.Padmaja, B.Markondaiah, N.Jena, B.Sridhar, M.U.Kiran|2006|J.Org.Chem.|71|337|doi:10.1021/jo0516887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0tdj
title: CCDC 298697: Experimental Crystal Structure Determination

description: Related Article: S.M.Grayson, B.K.Long, S.Kusomoto, B.P.Osborn, R.P.Callahan, C.R.Chambers, C.G.Willson|2006|J.Org.Chem.|71|341|doi:10.1021/jo0513156
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t6b
title: CCDC 298691: Experimental Crystal Structure Determination

description: Related Article: G.Kumaraswamy, M.Padmaja, B.Markondaiah, N.Jena, B.Sridhar, M.U.Kiran|2006|J.Org.Chem.|71|337|doi:10.1021/jo0516887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t7c
title: CCDC 298692: Experimental Crystal Structure Determination

description: Related Article: G.Kumaraswamy, M.Padmaja, B.Markondaiah, N.Jena, B.Sridhar, M.U.Kiran|2006|J.Org.Chem.|71|337|doi:10.1021/jo0516887
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.14679.68005
title: The Social WATERobot (AabRobot): " Water Awareness Teaching and Educational Robot "
DOI: 10.5517/ccb0t48
title: CCDC 298689: Experimental Crystal Structure Determination

description: Related Article: Dong Zhang, E.J.Dufek, E.L.Clennan|2006|J.Org.Chem.|71|315|doi:10.1021/jo052127i
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t26
title: CCDC 298687: Experimental Crystal Structure Determination

description: Related Article: S.Naya, H.Ohtoshi, M.Nitta|2006|J.Org.Chem.|71|176|doi:10.1021/jo051777j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t37
title: CCDC 298688: Experimental Crystal Structure Determination

description: Related Article: S.Naya, H.Ohtoshi, M.Nitta|2006|J.Org.Chem.|71|176|doi:10.1021/jo051777j
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t04
title: CCDC 298685: Experimental Crystal Structure Determination

description: Related Article: A.Salaun, A.Favre, B.Le Grel, M.Potel, P.Le Grel|2006|J.Org.Chem.|71|150|doi:10.1021/jo051887q
description: Related Article: A.Salaun, C.Mocquet, R.Perochon, A.Lecorgne, B.Le Grel, M.Potel, P.Le Grel|2008|J.Org.Chem.|73|8579|doi:10.1021/jo8013963
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0t15
title: CCDC 298686: Experimental Crystal Structure Determination

description: Related Article: A.Salaun, A.Favre, B.Le Grel, M.Potel, P.Le Grel|2006|J.Org.Chem.|71|150|doi:10.1021/jo051887q
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7r8mv
title: CCDC 230907: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7r8nw
title: CCDC 230908: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc7r8px
title: CCDC 230909: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0swz
title: CCDC 298681: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0sx0
title: CCDC 298682: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.29962.67528
title: OILTAP tap chenger
DOI: 10.5517/ccb0sy1
title: CCDC 298683: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccb0sz2
title: CCDC 298684: Experimental Crystal Structure Determination

description: Related Article: Xuefeng Mei, A.T.August, C.Wolf|2006|J.Org.Chem.|71|142|doi:10.1021/jo0518809
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9410g
title: CCDC 271994: Experimental Crystal Structure Determination

description: Related Article: Sang Ick Lee, Se Yeoun Park, Ji Hoon Park, Il Gu Jung, Soo Young Choi, Young Keun Chung, Bun Yeoul Lee|2006|J.Org.Chem.|71|91|doi:10.1021/jo051685u
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9411h
title: CCDC 271995: Experimental Crystal Structure Determination

description: Related Article: Sang Ick Lee, Se Yeoun Park, Ji Hoon Park, Il Gu Jung, Soo Young Choi, Young Keun Chung, Bun Yeoul Lee|2006|J.Org.Chem.|71|91|doi:10.1021/jo051685u
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.16226.32969
title: C1 2016-17-JLF-pred GS4-1 & 2 -11 -16 results vs forecasts
DOI: 10.15468/dl.63mbua
title: Occurrence Download

description: A dataset containing 8083 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cercocarpus ledifolius"
 ]
}

 The dataset includes 8083 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025499-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc9mtrg
title: CCDC 287176: Experimental Crystal Structure Determination

description: Related Article: Sang Ick Lee, Se Yeoun Park, Ji Hoon Park, Il Gu Jung, Soo Young Choi, Young Keun Chung, Bun Yeoul Lee|2006|J.Org.Chem.|71|91|doi:10.1021/jo051685u
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13018/bmr25254
title: Solution structure of the toxin, RhTx
DOI: 10.13018/bmr25255
title: Denatured state of HIV-1 protease
DOI: 10.13018/bmr25257
title: Chemical Shifts of Y99E mutant CaM with eNOS
DOI: 10.13018/bmr25259
title: NMR structure of hypothetical protein NP_344732.1 from Streptococcus pneumoniae TIGR4
DOI: 10.5281/zenodo.18785428
title: Extended Worked Examples for The Vavilov–Zwicky Framework: A Provable Compression Principle in Modular Protein Design

description: Detailed step-by-step application of the Vavilov–Zwicky framework to three modular protein systems — DEBS-type polyketide synthases (PKS), non-ribosomal peptide synthetases (NRPS), and Class-2 CRISPR-Cas effectors. These extended worked examples demonstrate the full workflow (parameterisation, attribute definition, morphological matrix construction, Vavilov homology constraints, and output ranking) and serve as supplementary material to the main manuscript "The Vavilov–Zwicky Framework: A Provable Compression Principle in Modular Protein Design". All values are literature-derived ranges consistent with published data (MIBiG 3.0, Pfam, metagenomic surveys, etc.) and are provided solely to illustrate the scale of compression achievable under biologically realistic assumptions. They do not represent outputs from actual algorithm runs on full sequence databases.
DOI: 10.5281/zenodo.18785427
title: Extended Worked Examples for The Vavilov–Zwicky Framework: A Provable Compression Principle in Modular Protein Design

description: Detailed step-by-step application of the Vavilov–Zwicky framework to three modular protein systems — DEBS-type polyketide synthases (PKS), non-ribosomal peptide synthetases (NRPS), and Class-2 CRISPR-Cas effectors. These extended worked examples demonstrate the full workflow (parameterisation, attribute definition, morphological matrix construction, Vavilov homology constraints, and output ranking) and serve as supplementary material to the main manuscript "The Vavilov–Zwicky Framework: A Provable Compression Principle in Modular Protein Design". All values are literature-derived ranges consistent with published data (MIBiG 3.0, Pfam, metagenomic surveys, etc.) and are provided solely to illustrate the scale of compression achievable under biologically realistic assumptions. They do not represent outputs from actual algorithm runs on full sequence databases.
DOI: 10.13018/bmr25260
title: Solution structure of human insulin at pH 1.9
DOI: 10.13018/bmr25261
title: Solution structure of [GlnB22]-insulin mutant at pH 1.9
DOI: 10.13018/bmr25263
title: NMR assignments of the CUS-3 phage coat protein insertion domain.
DOI: 10.13018/bmr25264
title: ctNsa-2 1-84
DOI: 10.13018/bmr25265
title: Structural insight into an essential assembly factor network on the pre-ribosome
DOI: 10.48804/o3htii
title: Replication data for "Association between abnormal DNA methylation and altered transcriptome in muscle five years after critical illness"

description: Background Critically ill patients requiring intensive care unit (ICU) admission suffer from muscle weakness that persists for years. Recently, altered RNA expression was documented in muscle of former ICU patients 5 years after critical illness that suggested disrupted mitochondrial function, disturbed lipid metabolism and fibrosis, of which many associated with the former patients’ long-term loss of muscle strength. We hypothesized that abnormal DNA methylation detectable years after critical illness associates with these abnormal RNA expression patterns, as a potential biological basis for the persistent loss of muscle strength. 
Methods Genome-wide DNA methylation was assessed (Infiniumv2®-HumanMethylationEPIC-BeadChips) in skeletal muscle biopsies from 118 former ICU patients harvested 5 years after critical illness (79.6% male, median 58 years, median BMI 27.3 kg/m2) and 30 controls who never required ICU admission (76.7% male, median 61 years, median BMI 26.4 kg/m2). Differentially methylated positions (DMPs) in former patients versus controls were identified, adjusting for age, sex and BMI (minfi-package in R, Benjamini-Hochberg false-discovery-rate &lt;0.05), followed by pathway over-representation of affected genes. Spearman-correlations between DMP methylation and RNA expression were compared among groups of RNA with Z-test and Kolmogorov-Smirnov test. Risk factors for abnormal DNA methylation were identified with multivariable linear regression. 
Results As compared with controls, former ICU patients showed 7379 DMPs (average difference 2.6% ranging up to 24.9%). They were associated with 1334 unique genes, enriched for muscle contraction, vascular development, cell differentiation and signal transduction. DMPs correlated more strongly with differentially expressed RNAs (DERNAs) than with non-differentially expressed RNAs (18.1% vs 1.7% correlations with |rho|&gt;0.3, P&lt;2.2×10⁻¹⁶). Such correlations were more abundant among DERNAs associated with reduced muscle strength vs those not associated (24.4% vs 12.5%), also within the previously identified disrupted pathways (mitochondrial function 23.3% vs 10.9%, lipid metabolism 15.9% vs 7.2%, fibrosis 44.3% vs 5.8%, all P&lt;2.2×10⁻¹⁶). Older age, female sex, in-ICU treatment with glucocorticoids, benzodiazepines, early parenteral nutrition and opioids, and insulin and antipsychotic medication at follow-up were most notably associated with more abnormal DNA methylation.
Conclusions Abnormal DNA methylation in muscle biopsied 5 years after critical illness associated with long-term altered RNA expression that has been linked to lower muscle strength. These data suggest a possible epigenetic basis for this long-term sequel after critical illness. Abnormal DNA methylation was also found to associate with (possibly) avoidable risk factors during and after ICU stay. These findings may open perspectives for prevention and possibly treatment of long-term muscle weakness after critical illness.
DOI: 10.13018/bmr25266
title: Solution structure of decorin binding protein B from Borrelia burgdorferi
DOI: 10.13018/bmr25267
title: Backbone 1H, 13C and 15N Chemical Shift Assignments for Human TRIM25 (PRYSPRY) domain
DOI: 10.13018/bmr25268
title: SpoVM structure determination
DOI: 10.15468/dl.7bwhrm
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Pollachius pollachius"
 ]
}

 The dataset includes 473 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003276-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25269
title: Structure of ASM1
DOI: 10.15468/dl.jz4rq6
title: Occurrence Download

description: A dataset containing 80 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Podiceps auritus",
 "Year 2001-2026"
 ]
}

 The dataset includes 80 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003274-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25270
title: SpoVM P9A mutant structure
DOI: 10.15468/dl.vkey4q
title: Occurrence Download

description: A dataset containing 9072 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Zimbabwe",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1905-1926"
 ]
}

 The dataset includes 9072 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003273-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25271
title: NMR assignments of the prolyl peptidyl isomerase domain of the ribosome-associated molecular chaperone trigger factor from Escherichia coli
DOI: 10.13018/bmr25272
title: Backbone 1H, 13C and 15N and 13Ca and 13Cb chemical shift assignment of Bet v 1.0101
DOI: 10.13018/bmr25273
title: Solution structure of phosphorylated cytosolic part of Trop2
DOI: 10.13018/bmr25274
title: Solution structure of cytosolic part of Trop2
DOI: 10.13018/bmr25275
title: Solution structure of eEF1Bdelta CAR domain
DOI: 10.13018/bmr25276
title: Solution structure of eEF1Bdelta CAR domain in TCTP-bound state
DOI: 10.13018/bmr25277
title: Solution structure of the lantibiotic self-resistance lipoprotein MlbQ from Microbispora ATCC PTA-5024
DOI: 10.15468/dl.4v89hk
title: Occurrence Download

description: A dataset containing 928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salamandra salamandra",
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2020",
 "Month is October"
 ]
}

 The dataset includes 928 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003278-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25278
title: Backbone chemical shift assignments for the sensor domain of the Burkholderia pseudomallei histidine kinase RisS. Seattle Structural Genomics Center for Infectious Disease target BupsA.00863.i.
DOI: 10.13018/bmr25279
title: Met e- and Ile d1-methyl 1H and 13C Chemical Shift Assignments for the HECT domain of the human Smurf2 ubiquitin ligase
DOI: 10.13018/bmr25280
title: 1H, 13C, and 15N chemical shift assignments of mouse BMAL1 transactivation domain
DOI: 10.13018/bmr25281
title: NMR STRUCTURE OF YERSINIA PESTIS AIL (ATTACHMENT INVASION LOCUS) IN DECYLPHOSPHOCHOLINE MICELLES
DOI: 10.13018/bmr25282
title: Backbone assignment of native and 8M urea-denatured MJ0366
DOI: 10.13018/bmr25283
title: Solution structure of scoloptoxin SSD609 from Scolopendra mutilans
DOI: 10.13018/bmr25284
title: Solution Structure of the 3,7-dioxo-octyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor
DOI: 10.13018/bmr25285
title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for Scapharca dimeric hemoglobin (HbI) bound to CO
DOI: 10.13018/bmr25286
title: Backbone 1H, 13C, and 15N Chemical Shift Assignments for Scapharca dimeric hemoglobin (HbI) in the unliganded state
DOI: 10.15468/dl.gdt8b8
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Cobitis vardarensis)",
 "Geometry POLYGON((19.0 42.0, 19.0 34.5, 29.7 34.5, 29.7 42.0, 19.0 42.0))"
 ]
}

 The dataset includes 119 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003275-260225131425191/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13018/bmr25287
title: Solution Structure of the 5-phenyl-3-oxo-pentyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor
DOI: 10.13018/bmr25288
title: Solution structure of the TRIM19 B-box1 (B1) of human promyelocytic leukemia (PML)
DOI: 10.13018/bmr25289
title: Atomic-resolution 3D structure of amyloid-beta fibrils: the Osaka mutation
DOI: 10.13018/bmr25290
title: Solid-state NMR 13C and 15N resonance assignments of a seven-transmembrane helical protein Anabaena Sensory Rhodopsin in the E. coli Inner Membrane