cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.31309459.v1
title: Single-cell transcriptome revealed the aberrant keratinocytes activation in antigen presentation in atopic dermatitis

description: Atopic dermatitis (AD), a common chronic inflammatory skin disease, has been extensively studied using single-cell genomics. However, keratinocytes, as key effector cells in AD, have underlying mechanisms remain incompletely understood and require further investigation. We integrated single-cell transcriptomic data from skin tissues of healthy controls, chronic active AD patients, spontaneously healed AD (SHAD) patients, and an ovalbumin-induced AD mouse model. The study particularly emphasized the gene expression and cellular dynamics of keratinocytes across the different groups, as well as their interactions with immune cells. Compared to healthy controls, we observed significant changes in the keratinocyte transcriptome, cellular state, and keratinocyte-immune cell ligand-receptor interactions in AD skin, particularly the marked activation of genes involved in antigen processing and presentation. Interestingly, such gene activation was not observed in keratinocytes from the ovalbumin-induced AD mouse model, despite its phenotype closely resembling human AD. Furthermore, in SHAD, we identified a recovery of both the ligand-receptor interaction patterns and antigen processing and presentation genes, accompanied by a notable shift in the transcriptome. This involved a significant downregulation of genes related to cytoplasmic transcription and oxidative phosphorylation. Notably, this pattern was not observed in the self-healing mouse model following the removal of ovalbumin stimulation. Our results suggest that the persistent activation of antigen processing and presentation pathways in keratinocytes may be a key driver of chronic inflammation in AD. Therefore, redirecting anti-allergic therapeutic strategies from solely targeting immune cells to targeting of keratinocyte-mediated antigen presentation may offer a more effective approach. Furthermore, we raise concerns about the use of ovalbumin-induced mouse models to recapitulate human chronic AD, as the underlying mechanisms may differ significantly.
DOI: 10.21227/8mhb-km45
title: "California Seabed Sediment"

description: "The study areas covered by this work are all located off the coast of California, USA. The coastal region of California is characterized by complex geological structures as it lies on the boundary between the Pacific Plate and the North American Plate, leading to frequent seismic and volcanic activity."
DOI: 10.15468/dl.j3pzm3
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phycocharax rasbora",
 "DecimalLatitude is not null",
 "DecimalLongitude is not null"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006318-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m9weu4
title: Occurrence Download

description: A dataset containing 5035 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthurdendyus triangulatus",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 5035 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006319-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26982696.v1
title: Feasibility of predicting changes in gait biomechanics following muscle strength perturbations using optimal control in patients with transfemoral amputation

description: Bone-anchored limbs (BALs) are socket prosthesis alternatives, directly fixing to residual bone <i>via</i> osseointegrated implant. There is a need to quantify multi-level effects of rehabilitation for transfemoral BAL users (i.e. changes in joint loading and movement patterns). Our primary objective was determining feasibility of using optimal control to predict gait biomechanics compared to ground-truth experimental data from transfemoral BAL users. A secondary objective was examining biomechanical effects from estimated changes in hip abductor muscle strength. We developed and validated a workflow for predicting gait biomechanics in four transfemoral BAL users and investigated the biomechanical effects of altered hip abductor strengths.
DOI: 10.6084/m9.figshare.27093915
title: Identification of neutrophil extracellular trap-related genes in Alzheimer’s disease based on comprehensive bioinformatics analysis

description: Alzheimer’s disease (AD) is the most prevalent neurodegenerative disease. There are currently no effective interventions to slow down or prevent the occurrence and progression of AD. Neutrophil extracellular traps (NETs) have been proven to be tightly linked to AD. This project attempted to identify hub genes for AD based on NETs. Gene expression profiles of the training set and validation set were downloaded from the Gene Expression Omnibus (GEO) database, including non-demented (ND) controls and AD samples. NET-related genes (NETRGs) were collected from the literature. Differential analysis identified 21 AD differentially expressed NETRGs (AD-DE-NETRGs) majorly linked to functions such as defense response to bacterium as well as pathways including IL-17 signaling pathway, as evidenced by enrichment analyses of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Protein–protein interaction (PPI) network, Minutia Cylinder-Code (MCC) algorithm, and molecular complex detection (MCODE) algorithm in the CytoHubba plug-in were employed to identify five hub genes (NFKBIA, SOCS3, CCL2, TIMP1, ACTB). Their diagnostic ability was validated in the validation set using receiver operating characteristic (ROC) curves and gene differential expression analysis. A total of 16 miRNAs and 132 lncRNAs were predicted through the mirDIP and ENCORI databases, and a lncRNA–miRNA–mRNA regulatory network was constructed using Cytoscape software. Small molecular compounds such as Benzo(a)pyrene and Copper Sulfate were predicted to target hub genes using the CTD database. This project successfully identified five hub genes, which may serve as potential biomarkers for AD, proffering clues for new therapeutic targets.
DOI: 10.6084/m9.figshare.27093915.v1
title: Identification of neutrophil extracellular trap-related genes in Alzheimer’s disease based on comprehensive bioinformatics analysis

description: Alzheimer’s disease (AD) is the most prevalent neurodegenerative disease. There are currently no effective interventions to slow down or prevent the occurrence and progression of AD. Neutrophil extracellular traps (NETs) have been proven to be tightly linked to AD. This project attempted to identify hub genes for AD based on NETs. Gene expression profiles of the training set and validation set were downloaded from the Gene Expression Omnibus (GEO) database, including non-demented (ND) controls and AD samples. NET-related genes (NETRGs) were collected from the literature. Differential analysis identified 21 AD differentially expressed NETRGs (AD-DE-NETRGs) majorly linked to functions such as defense response to bacterium as well as pathways including IL-17 signaling pathway, as evidenced by enrichment analyses of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG). Protein–protein interaction (PPI) network, Minutia Cylinder-Code (MCC) algorithm, and molecular complex detection (MCODE) algorithm in the CytoHubba plug-in were employed to identify five hub genes (NFKBIA, SOCS3, CCL2, TIMP1, ACTB). Their diagnostic ability was validated in the validation set using receiver operating characteristic (ROC) curves and gene differential expression analysis. A total of 16 miRNAs and 132 lncRNAs were predicted through the mirDIP and ENCORI databases, and a lncRNA–miRNA–mRNA regulatory network was constructed using Cytoscape software. Small molecular compounds such as Benzo(a)pyrene and Copper Sulfate were predicted to target hub genes using the CTD database. This project successfully identified five hub genes, which may serve as potential biomarkers for AD, proffering clues for new therapeutic targets.
DOI: 10.6084/m9.figshare.26982696
title: Feasibility of predicting changes in gait biomechanics following muscle strength perturbations using optimal control in patients with transfemoral amputation

description: Bone-anchored limbs (BALs) are socket prosthesis alternatives, directly fixing to residual bone <i>via</i> osseointegrated implant. There is a need to quantify multi-level effects of rehabilitation for transfemoral BAL users (i.e. changes in joint loading and movement patterns). Our primary objective was determining feasibility of using optimal control to predict gait biomechanics compared to ground-truth experimental data from transfemoral BAL users. A secondary objective was examining biomechanical effects from estimated changes in hip abductor muscle strength. We developed and validated a workflow for predicting gait biomechanics in four transfemoral BAL users and investigated the biomechanical effects of altered hip abductor strengths.
DOI: 10.15468/dl.3atp3q
title: Occurrence Download

description: A dataset containing 1371 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hastingsia, Poa)",
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1371 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006320-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18601256
title: PROBLEMS OF SYNTACTIC ANALYSIS OF ABDULLA ORIPOV'S POETRY

description: This article analyzes the syntactic structure of Abdulla Oripov’s poetry from the perspective of linguopoetics and stylistic features of poetic discourse. The study examines the theoretical foundations of poetic syntax, the relativity of sentence boundaries in poetic texts, and the aesthetic and emotional functions of syntactic units. Particular attention is paid to the use of simple and complex sentences, elliptical and incomplete constructions, syntactic parallelism, repetition, inversion, rhetorical questions, and exclamatory sentences in the poet’s works, as well as their poetic functions. The article goes beyond traditional grammatical approaches and focuses on the relationship between syntactic form and poetic meaning. It substantiates the idea that syntax in Abdulla Oripov’s poetry is not merely a grammatical structure, but an essential expressive means that reveals the poet’s individual artistic thinking. The study also highlights the significance of context, rhythm, intonation, and the factor of national mentality in the analysis of poetic syntax.
DOI: 10.5281/zenodo.18601257
title: PROBLEMS OF SYNTACTIC ANALYSIS OF ABDULLA ORIPOV'S POETRY

description: This article analyzes the syntactic structure of Abdulla Oripov’s poetry from the perspective of linguopoetics and stylistic features of poetic discourse. The study examines the theoretical foundations of poetic syntax, the relativity of sentence boundaries in poetic texts, and the aesthetic and emotional functions of syntactic units. Particular attention is paid to the use of simple and complex sentences, elliptical and incomplete constructions, syntactic parallelism, repetition, inversion, rhetorical questions, and exclamatory sentences in the poet’s works, as well as their poetic functions. The article goes beyond traditional grammatical approaches and focuses on the relationship between syntactic form and poetic meaning. It substantiates the idea that syntax in Abdulla Oripov’s poetry is not merely a grammatical structure, but an essential expressive means that reveals the poet’s individual artistic thinking. The study also highlights the significance of context, rhythm, intonation, and the factor of national mentality in the analysis of poetic syntax.
DOI: 10.25740/wd776hn7919
title: ISET-LFM: A Physics-based Synthetic Radiance Dataset for LED Flicker Mitigation in Automotive Imaging

description: This dataset provides high-fidelity, camera-agnostic scene radiance sequences designed to support the development and benchmarking of LED Flicker Mitigation (LFM) algorithms. While modern High Dynamic Range (HDR) automotive sensors utilize multi-exposure captures to manage high-contrast scenes, the interaction between pulsed LED sources and short exposure duration often results in missing signals (flicker). Conversely, long exposure duration captures the signal but introduces significant motion-induced blur.
To address this motion-flicker trade-off, this dataset contains 200 diverse synthetic automotive scenes hand-picked for the prominence of LED sources. Each scene provides simultaneous short-exposure (3–5 ms) and long-exposure (11.11 ms) spectral radiance maps rendered with non-uniform motion blur corresponding to ego-velocities between 20–50 m/s.
By providing decomposed light groups (headlights, streetlights, environment, and others), the dataset enables researchers to modulate LED parameters (duty cycle and frequency) of individual light groups without re-rendering. This resource also serves as a foundation for training data-driven models to reconstruct sharp, flicker-free images for safety-critical Advanced Driver Assistance Systems (ADAS).
More details about organization of the dataset can be found in README.md.
This repository contains data files that were created by code and techniques detailed at https://github.com/AyushJam/iset-lfm
DOI: 10.15468/dl.8c35ck
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-68.92684 -29.8219,-60.63198 -29.8219,-60.63198 -19.17639,-68.92684 -19.17639,-68.92684 -29.8219))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Holocheilus fabrisii"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006322-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31306807
title: EF and Mental Health dataset_2.9.2026

description: This repository contains de-identified individual-level survey data from 3,058 adults in Botswana, Ghana, Nigeria, and Tanzania collected between April 2020 and November 2022 using the Sonde Health digital platform. The dataset supports analyses examining associations among COVID-19 symptom burden, chronic disease, mental health, health behaviors, and executive function measured with the Stroop Color–Word interference task.<b>Content Overview:</b><br>The dataset includes the following domains:<b>Sociodemographics:</b> age, sex, education, employment status, country<b>COVID-19 variables:</b> self-reported symptom count and symptom categories<b>Chronic disease:</b> number and type of diagnosed conditions<b>Mental health:</b> GAD-7 (anxiety) and PHQ-9 (depressive symptoms)<b>Health behaviors:</b> moderate-to-vigorous physical activity (minutes/week), sedentary time<b>Self-rated health</b><b>Executive function:</b> Stroop Color–Word interference score<b>De-identification and Ethics:</b><br>All direct identifiers were removed prior to deposit. Geographic information is limited to country level, and no names, contact details, IP addresses, or dates of birth are included. Data sharing complies with institutional ethics approvals and participant consent provisions.<br><b>Files Included: </b><b>dataset.csv</b> – De-identified analytic dataset
DOI: 10.6084/m9.figshare.31306807.v1
title: EF and Mental Health dataset_2.9.2026

description: This repository contains de-identified individual-level survey data from 3,058 adults in Botswana, Ghana, Nigeria, and Tanzania collected between April 2020 and November 2022 using the Sonde Health digital platform. The dataset supports analyses examining associations among COVID-19 symptom burden, chronic disease, mental health, health behaviors, and executive function measured with the Stroop Color–Word interference task.<b>Content Overview:</b><br>The dataset includes the following domains:<b>Sociodemographics:</b> age, sex, education, employment status, country<b>COVID-19 variables:</b> self-reported symptom count and symptom categories<b>Chronic disease:</b> number and type of diagnosed conditions<b>Mental health:</b> GAD-7 (anxiety) and PHQ-9 (depressive symptoms)<b>Health behaviors:</b> moderate-to-vigorous physical activity (minutes/week), sedentary time<b>Self-rated health</b><b>Executive function:</b> Stroop Color–Word interference score<b>De-identification and Ethics:</b><br>All direct identifiers were removed prior to deposit. Geographic information is limited to country level, and no names, contact details, IP addresses, or dates of birth are included. Data sharing complies with institutional ethics approvals and participant consent provisions.<br><b>Files Included: </b><b>dataset.csv</b> – De-identified analytic dataset
DOI: 10.15468/dl.rb4u2c
title: Occurrence Download

description: A dataset containing 27985 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Albizia julibrissin",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 27985 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006321-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.am656z
title: Occurrence Download

description: A dataset containing 763 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.709542 52.547421, 4.487346 52.332689, 4.719118 52.200022, 4.709542 52.547421))",
 "Year is greater than or equal to 2020",
 "EventDate is less than or equal to 2025-02-09",
 "InstitutionCode is iNaturalist",
 "ClassKey is Aves",
 {
 "not" : {
 "FamilyKey" : [
 "is one of (Viviparidae, Naticidae, Littorinidae, Strombidae, Calyptraeidae, Caecidae, Cassidae, Tornidae, Ovulidae, Hipponicidae, Cypraeidae, Triviidae, Neritidae, Euryleptidae, Dugesiidae, Caprellidae, Gammaridae, Cirolanidae, Sphaeromatidae, Idoteidae, Philosciidae, Porcellionidae, Halophilosciidae, Aegidae, Cylisticidae, Delphinidae, Phocoenidae)"
 ]
 }
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than 100",
 "OccurrenceStatus is one of (Present)",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Living Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 763 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006323-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18600910
title: Replication Package: Understanding the industry perception of ethics in the software development lifecycle

description: This repository contains the supporting material for the manuscript titled "Understanding the industry perception of ethics in the software development lifecycle", currently under revision for the ResponsibleSE, colocated with ESEC/FSE 2026. 

Repository Content:

File 1 - Survey_Ethics.pdf: The complete survey instrument used in the study to investigate how practitioners perceive and are confident in operationalizing ethics in software development. It consists of 4 sections, namely:



Section A: Consent and Identification;

Section B: Personal and Professional Profile;

Section C: Ethics Practices and Self-Perception in Software Development; and 

Section D: Ethical Competency Set for Software Professionals.


File 2 - Survey_Ethics_Responses.xlsx: This worksheet presents the anonymized survey answers collected during the study. It is composed exclusively of the question covered in this study: Q1-Q10 and Q17-Q20. When the original language of the response was not English, we used OpenAI to generate the English version.

File 3 - Q1_codebook.xlsx: The detailed inductive coding for RQ1. The worksheet presents all the 72 responses, the key terms retrieved from each response, the matched categories identified for each response, the primary category, and finally, the theme. When the original language of the response was not English, we used OpenAI to generate the English version.
DOI: 10.5281/zenodo.18600909
title: Replication Package: Understanding the industry perception of ethics in the software development lifecycle

description: This repository contains the supporting material for the manuscript titled "Understanding the industry perception of ethics in the software development lifecycle", currently under revision for the ResponsibleSE, colocated with ESEC/FSE 2026. 

Repository Content:

File 1 - Survey_Ethics.pdf: The complete survey instrument used in the study to investigate how practitioners perceive and are confident in operationalizing ethics in software development. It consists of 4 sections, namely:



Section A: Consent and Identification;

Section B: Personal and Professional Profile;

Section C: Ethics Practices and Self-Perception in Software Development; and 

Section D: Ethical Competency Set for Software Professionals.


File 2 - Survey_Ethics_Responses.xlsx: This worksheet presents the anonymized survey answers collected during the study. It is composed exclusively of the question covered in this study: Q1-Q10 and Q17-Q20. When the original language of the response was not English, we used OpenAI to generate the English version.

File 3 - Q1_codebook.xlsx: The detailed inductive coding for RQ1. The worksheet presents all the 72 responses, the key terms retrieved from each response, the matched categories identified for each response, the primary category, and finally, the theme. When the original language of the response was not English, we used OpenAI to generate the English version.
DOI: 10.5281/zenodo.18601260
title: ТКАНЕВАЯ ОРГАНИЗАЦИЯ И ФУНКЦИОНАЛЬНАЯ АКТИВНОСТЬ СЕЛЕЗЁНКИ У ЗДОРОВЫХ КРОЛИКОВ НА РАННЕМ ПОСТНАТАЛЬНОМ ЭТАПЕ РАЗВИТИЯ (3 МЕСЯЦА)

description: Целью исследования явилось комплексная оценка морфологии и функционального состояния селезёнки у клинически здоровых трёхмесячных кроликов для установления нормативных морфологических показателей.
DOI: 10.5281/zenodo.18601259
title: ТКАНЕВАЯ ОРГАНИЗАЦИЯ И ФУНКЦИОНАЛЬНАЯ АКТИВНОСТЬ СЕЛЕЗЁНКИ У ЗДОРОВЫХ КРОЛИКОВ НА РАННЕМ ПОСТНАТАЛЬНОМ ЭТАПЕ РАЗВИТИЯ (3 МЕСЯЦА)

description: Целью исследования явилось комплексная оценка морфологии и функционального состояния селезёнки у клинически здоровых трёхмесячных кроликов для установления нормативных морфологических показателей.
DOI: 10.15468/dl.cw53ty
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Atriplex bunburyana"
 ]
}

 The dataset includes 167 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006325-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.