cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10727392
title: plocamopherus_tilesii_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.19349237
title: Identification of gut microbiome and transcriptome changes in ulcerative colitis and pouchitis

description: Pouchitis is the common postoperative complication of ulcerative colitis (UC) and is also considered as inflammatory bowel disease. The aim was to investigate the microbiological and transcriptional differences between the two illnesses. Eighty-five participants were enrolled (37 UC, 15 healthy UC pouches, 15 pouchitis and 18 healthy volunteers) and stool samples were collected. Microbial populations were analyzed by pyrosequencing of 16S ribosomal DNA. Furthermore, transcriptome data of 119 UC and 28 pouch patients were obtained from two data sets for bioinformatics analysis. The results of gut microbiota community analysis showed that with aggravation of UC, intestinal microorganisms were characterized by a gradual decreased in diversity and numbers of butyrate-producing bacteria and <i>Bacteroides</i>. Besides, in addition to the decrease of probiotics, the proliferation of <i>Escherichia–Shigella</i> and <i>Ruminococcus gnavus</i> was observed in pouchitis which is related to multiple infection pathways. The function enrichment of differential expression genes and hub genes, as well as the immunological condition was shown to be distinct using transcriptome bioinformatics analysis between UC and pouchitis. A stronger immune response occurs in UC and may be associated with high expression of tumor necrosis factor and interleukin, while multiple hub genes such as <i>CDK1</i> in pouchitis are associated with cell cycle regulation. The characteristics of gut microbiota disturbance and transcriptome alteration in UC and pouchitis are different. Our findings suggested that pouchitis may have a unique pathogenesis which was separated from UC.
DOI: 10.6084/m9.figshare.7290725
title: MOESM2 of Analyses of changes in myocardial long non-coding RNA and mRNA profiles after severe hemorrhagic shock and resuscitation via RNA sequencing in a rat model

description: Additional file 2: Table S2: The different expression levels of all lncRNAs between the sham group and I/R group.
DOI: 10.15468/p5vjny
title: SEPE LE GROSEILLER - Biotope_MAMMIF_INV

description: inventaire mammifères / Projet éolien de 5 éoliennes de 130 ou 150 m en bout de pale pour une puissance de 2.2 MW et un poste de livraison.
DOI: 10.6084/m9.figshare.19349237.v1
title: Identification of gut microbiome and transcriptome changes in ulcerative colitis and pouchitis

description: Pouchitis is the common postoperative complication of ulcerative colitis (UC) and is also considered as inflammatory bowel disease. The aim was to investigate the microbiological and transcriptional differences between the two illnesses. Eighty-five participants were enrolled (37 UC, 15 healthy UC pouches, 15 pouchitis and 18 healthy volunteers) and stool samples were collected. Microbial populations were analyzed by pyrosequencing of 16S ribosomal DNA. Furthermore, transcriptome data of 119 UC and 28 pouch patients were obtained from two data sets for bioinformatics analysis. The results of gut microbiota community analysis showed that with aggravation of UC, intestinal microorganisms were characterized by a gradual decreased in diversity and numbers of butyrate-producing bacteria and <i>Bacteroides</i>. Besides, in addition to the decrease of probiotics, the proliferation of <i>Escherichia–Shigella</i> and <i>Ruminococcus gnavus</i> was observed in pouchitis which is related to multiple infection pathways. The function enrichment of differential expression genes and hub genes, as well as the immunological condition was shown to be distinct using transcriptome bioinformatics analysis between UC and pouchitis. A stronger immune response occurs in UC and may be associated with high expression of tumor necrosis factor and interleukin, while multiple hub genes such as <i>CDK1</i> in pouchitis are associated with cell cycle regulation. The characteristics of gut microbiota disturbance and transcriptome alteration in UC and pouchitis are different. Our findings suggested that pouchitis may have a unique pathogenesis which was separated from UC.
DOI: 10.6084/m9.figshare.7290758.v1
title: MOESM4 of Analyses of changes in myocardial long non-coding RNA and mRNA profiles after severe hemorrhagic shock and resuscitation via RNA sequencing in a rat model

description: Additional file 4: Table S4: The different expression levels of all mRNAs between the sham group and I/R group.
DOI: 10.6084/m9.figshare.7290734
title: Additional file 5 of Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

description: Table S4. Genotypic data of CfSUS identified in the associated population. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7290725.v1
title: MOESM2 of Analyses of changes in myocardial long non-coding RNA and mRNA profiles after severe hemorrhagic shock and resuscitation via RNA sequencing in a rat model

description: Additional file 2: Table S2: The different expression levels of all lncRNAs between the sham group and I/R group.
DOI: 10.6084/m9.figshare.23543197
title: Additional file 9 of A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice

description: Additional file 9: Table S3. Primers used for RACE-clone, full-length clone, cRNA synthesis, RNA interference, and qRT-PCR.
DOI: 10.6084/m9.figshare.23543243
title: Additional file 1 of Comparative phylogenetic analysis and transcriptomic profiling of Dengue (DENV-3 genotype I) outbreak in 2021 in Bangladesh

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22602850.v1
title: Additional file 1 of Mechanism of autophagy induced by activation of the AMPK/ERK/mTOR signaling pathway after TRIM22-mediated DENV-2 infection of HUVECs

description: Additional file 1. Original data of Western Blot results.
DOI: 10.6084/m9.figshare.7290737.v1
title: MOESM3 of Analyses of changes in myocardial long non-coding RNA and mRNA profiles after severe hemorrhagic shock and resuscitation via RNA sequencing in a rat model

description: Additional file 3: Table S3: The raw data of differentially expressed lncRNAs.
DOI: 10.6084/m9.figshare.23543173.v1
title: Additional file 3 of A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice

description: Additional file 3: Table S2. Chemicals used in experiments.
DOI: 10.6084/m9.figshare.8863484.v1
title: Novel protein microarray for the detection of avian influenza virus antibodies and simultaneous distinction of antibodies against H5 and H7 subtypes

description: Avian influenza virus (AIV) can cause serious zoonotic disease, thereby threatening the poultry industry and human health. An efficient and rapid detection approach is crucial to prevent and control the spread of avian influenza. In this study, a novel protein microarray was developed. Haemagglutinin proteins of H5 and H7 subtypes and nucleoprotein (NP) were purified and spotted onto the initiator-integrated poly-(dimethylsiloxane) as antigens. Monoclonal antibodies with inhibition effect were screened and utilized for the synchronous detection of three avian influenza antibodies in different species. In the protein microarray, the cut-off values were 40%, 50% and 30% inhibition for H5 antibody detection; 50%, 50% and 20% for NP antibody detection; 40%, 50% and 40% for H7 antibody detection in chicken, peacock and duck sera, respectively. The 95 serum samples were detected by microarray, and results were compared with the findings of AIV antibody test enzyme-linked immunosorbent assay (ELISA) or haemagglutination inhibition (HI) test. NP antibody detection in the microarray showed 100% (55/55) agreement ratio in chicken using ELISA. Compared with HI, H5 antibody detection in the microarray showed 100% (95/95) agreement ratio in chicken, peacock and duck, whilst those of H7 displayed 98.18% (54/55) agreement in chicken, 100% (20/20) in peacock and 90% (18/20) in duck. In conclusion, this novel protein microarray is a high-throughput and specific method for the detection of AIV antibodies and simultaneous distinction of antibodies against H5 and H7 subtypes. It can be applied to the serological diagnosis and epidemiological investigation of AIV. <b>RESEARCH HIGHLIGHTS</b>A novel protein microarray method has been developed.The microarray can detect AIV antibodies and distinguish between H5 and H7 subtypes.The study lays the foundation for simultaneous identification of multiple pathogens. A novel protein microarray method has been developed. The microarray can detect AIV antibodies and distinguish between H5 and H7 subtypes. The study lays the foundation for simultaneous identification of multiple pathogens.
DOI: 10.6084/m9.figshare.16727664.v1
title: Additional file 1 of Differential chemokine alteration in the variants of primary progressive aphasia—a role for neuroinflammation

description: Additional file 1: Supplementary Figure 1. Mean normalized protein expression values for the chemokines in controls and each of PPA groups in plasma. Significant differences with p values are shown on the graphs.
DOI: 10.6084/m9.figshare.16727664
title: Additional file 1 of Differential chemokine alteration in the variants of primary progressive aphasia—a role for neuroinflammation

description: Additional file 1: Supplementary Figure 1. Mean normalized protein expression values for the chemokines in controls and each of PPA groups in plasma. Significant differences with p values are shown on the graphs.
DOI: 10.6084/m9.figshare.23543197.v1
title: Additional file 9 of A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice

description: Additional file 9: Table S3. Primers used for RACE-clone, full-length clone, cRNA synthesis, RNA interference, and qRT-PCR.
DOI: 10.6084/m9.figshare.23543173
title: Additional file 3 of A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice

description: Additional file 3: Table S2. Chemicals used in experiments.
DOI: 10.21227/kfqr-4k56
title: IEEEXtreme 15: Bus Company

description: This dataset contains a total of 1341 submissions, with 1% correct solutions and 15% partial solutions. Link to the original challenge: https://csacademy.com/ieeextreme-practice/task/buscompany/ See the included PDF document for details about the original challenge.
DOI: 10.6084/m9.figshare.8863484
title: Novel protein microarray for the detection of avian influenza virus antibodies and simultaneous distinction of antibodies against H5 and H7 subtypes

description: Avian influenza virus (AIV) can cause serious zoonotic disease, thereby threatening the poultry industry and human health. An efficient and rapid detection approach is crucial to prevent and control the spread of avian influenza. In this study, a novel protein microarray was developed. Haemagglutinin proteins of H5 and H7 subtypes and nucleoprotein (NP) were purified and spotted onto the initiator-integrated poly-(dimethylsiloxane) as antigens. Monoclonal antibodies with inhibition effect were screened and utilized for the synchronous detection of three avian influenza antibodies in different species. In the protein microarray, the cut-off values were 40%, 50% and 30% inhibition for H5 antibody detection; 50%, 50% and 20% for NP antibody detection; 40%, 50% and 40% for H7 antibody detection in chicken, peacock and duck sera, respectively. The 95 serum samples were detected by microarray, and results were compared with the findings of AIV antibody test enzyme-linked immunosorbent assay (ELISA) or haemagglutination inhibition (HI) test. NP antibody detection in the microarray showed 100% (55/55) agreement ratio in chicken using ELISA. Compared with HI, H5 antibody detection in the microarray showed 100% (95/95) agreement ratio in chicken, peacock and duck, whilst those of H7 displayed 98.18% (54/55) agreement in chicken, 100% (20/20) in peacock and 90% (18/20) in duck. In conclusion, this novel protein microarray is a high-throughput and specific method for the detection of AIV antibodies and simultaneous distinction of antibodies against H5 and H7 subtypes. It can be applied to the serological diagnosis and epidemiological investigation of AIV. <b>RESEARCH HIGHLIGHTS</b>A novel protein microarray method has been developed.The microarray can detect AIV antibodies and distinguish between H5 and H7 subtypes.The study lays the foundation for simultaneous identification of multiple pathogens. A novel protein microarray method has been developed. The microarray can detect AIV antibodies and distinguish between H5 and H7 subtypes. The study lays the foundation for simultaneous identification of multiple pathogens.
DOI: 10.6084/m9.figshare.7290734.v1
title: Additional file 5 of Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

description: Table S4. Genotypic data of CfSUS identified in the associated population. (XLSX 30 kb)
DOI: 10.5281/zenodo.10695333
title: Supplementary dataset for the research article "Significant sea level fluctuations in the western tropical Pacific during the mid-Holocene"
DOI: 10.5281/zenodo.10727234
title: Apo-Calmodulin interacting with membranes
DOI: 10.5281/zenodo.10727394
title: Supplementary dataset for the research article "Significant sea level fluctuations in the western tropical Pacific during the mid-Holocene"
DOI: 10.5281/zenodo.8429283
title: Supplementary dataset for the research article "Significant sea level fluctuations in the western tropical Pacific during the mid-Holocene"

description: Table 1. U-Th aages of microatolls from Hainan Island, the northern South China Sea
DOI: 10.5281/zenodo.8429284
title: Supplementary dataset for the research article "Half-meter sea level fluctuations in the western tropical Pacific during the mid-Holocene"

description: Table 1. U-Th aages of microatolls from Hainan Island, the northern South China Sea
DOI: 10.6084/m9.figshare.12495029.v1
title: Additional file 2 of Repeat-induced point mutation in Neurospora crassa causes the highest known mutation rate and mutational burden of any cellular life

description: Additional file 2: Datasheet S1. Mapped depth and genome coverage of sequenced samples. Datasheet S2. Identified mutations during sexual and asexual cycles of N. crassa. Datasheet S3. Sanger verification of randomly picked mutations. Datasheet S4. Duplicates in N. crassa identified through different approaches. Datasheet S5. Clusters formed by 2:2 mutations in sexual cycle of N. crassa. Datasheet S6. False negative rates estimated using simulation approach. Datasheet S7. Detailed properties of Dup-Cl, Dup-One, and Dup-Zero regions. Datasheet S8. Tri-nucleotide context within different duplicates of N. crassa genome.
DOI: 10.6084/m9.figshare.23543167
title: Additional file 1 of A green leaf volatile, (Z)-3-hexenyl-acetate, mediates differential oviposition by Spodoptera frugiperda on maize and rice

description: Additional file 1: Table S1. The number of haplotypes in samples identified using CO I and Tpi marker.
DOI: 10.6084/m9.figshare.12495029
title: Additional file 2 of Repeat-induced point mutation in Neurospora crassa causes the highest known mutation rate and mutational burden of any cellular life

description: Additional file 2: Datasheet S1. Mapped depth and genome coverage of sequenced samples. Datasheet S2. Identified mutations during sexual and asexual cycles of N. crassa. Datasheet S3. Sanger verification of randomly picked mutations. Datasheet S4. Duplicates in N. crassa identified through different approaches. Datasheet S5. Clusters formed by 2:2 mutations in sexual cycle of N. crassa. Datasheet S6. False negative rates estimated using simulation approach. Datasheet S7. Detailed properties of Dup-Cl, Dup-One, and Dup-Zero regions. Datasheet S8. Tri-nucleotide context within different duplicates of N. crassa genome.
DOI: 10.48597/qmtk-sm8j
title: Measurement of Lead at Kosetice (NOAK)

description: Measurement of Lead at Kosetice (NOAK)
DOI: 10.48597/qzyg-3rst
title: Measurement of Sulphur_dioxide at Eskdalemuir

description: Measurement of Sulphur_dioxide at Eskdalemuir
DOI: 10.48597/rdry-7qk3
title: Measurement of Lead at Kosetice (NOAK)

description: Measurement of Lead at Kosetice (NOAK)
DOI: 10.48597/rncn-fyfd
title: Measurement of Lead at Kosetice (NOAK)

description: Measurement of Lead at Kosetice (NOAK)
DOI: 10.48597/swm9-9kdv
title: Measurement of Cadmium at Rucava

description: Measurement of Cadmium at Rucava
DOI: 10.48597/szrh-wfdb
title: Measurement of Precipitation_amount at High Muffles

description: Measurement of Precipitation_amount at High Muffles
DOI: 10.48597/t24w-cv4d
title: Measurement of Ammonium at Svratouch

description: Measurement of Ammonium at Svratouch
DOI: 10.48597/tzeq-zcbc
title: Measurement of Inorganics in air and particle phase at Eskdalemuir

description: Measurement of Inorganics in air and particle phase at Eskdalemuir
DOI: 10.48597/u9uk-rgxx
title: Measurement of Sulphate_total at Aliartos

description: Measurement of Sulphate_total at Aliartos
DOI: 10.48597/ucy9-pcss
title: Measurement of Inorganics in air and particle phase at Eskdalemuir

description: Measurement of Inorganics in air and particle phase at Eskdalemuir
DOI: 10.48597/un6s-acsz
title: Measurement of Heavy metals at Rucava

description: Measurement of Heavy metals at Rucava
DOI: 10.48597/v5ya-5c52
title: Measurement of Heavy metals at Rucava

description: Measurement of Heavy metals at Rucava
DOI: 10.48597/v9xx-bjsr
title: Measurement of Sulphur_dioxide at Eskdalemuir

description: Measurement of Sulphur_dioxide at Eskdalemuir
DOI: 10.48597/vfy4-7x8b
title: Measurement of Inorganics in precipitation at Eskdalemuir

description: Measurement of Inorganics in precipitation at Eskdalemuir
DOI: 10.48597/vthj-swey
title: Measurement of Sulphur_dioxide at Eskdalemuir

description: Measurement of Sulphur_dioxide at Eskdalemuir
DOI: 10.48597/vwdr-kdk5
title: Measurement of Inorganics in air and particle phase at Eskdalemuir

description: Measurement of Inorganics in air and particle phase at Eskdalemuir
DOI: 10.48597/w8pq-gzdv
title: Measurement of Lead at Kosetice (NOAK)

description: Measurement of Lead at Kosetice (NOAK)
DOI: 10.15468/dl.xn5fxr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scirpus colchicus Kimer."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106211-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gzh8v
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saponaria jagelii Phitos & Greuter"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106212-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2we7pj
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria violascens Gürke"
 ]
}

 The dataset includes 51 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106214-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kynntt
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio navugabensis C.Jeffrey"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106213-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ezdze
title: Occurrence Download

description: A dataset containing 4118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella tamariscina (P.Beauv.) Spring"
 ]
}

 The dataset includes 4118 records from 140 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106215-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/8039309
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.15468/dl.ss5ntd
title: Occurrence Download

description: A dataset containing 782 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scirpus fuirenoides Maxim."
 ]
}

 The dataset includes 782 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106216-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tntzkh
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus tabanimontanus Figert"
 ]
}

 The dataset includes 250 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106217-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3sgdw
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saponaria kotschyi Boiss."
 ]
}

 The dataset includes 85 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106218-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kj895j
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Senecio neelgherryanus DC."
 ]
}

 The dataset includes 52 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106220-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vhuyz
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria viscidula Bunge"
 ]
}

 The dataset includes 122 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106222-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntqy8b
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella temehaniensis J.W.Moore"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0106223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.