DOI: 10.5281/zenodo.5729342
title: Tree census data from the SAFE Project 2011-12

description: <strong>Description: </strong> Tree census data from the SAFE Project 2011-12. Data includes measurements of DBH and estimates of tree height for all stems, fruiting and flowering estimates, estimates of epiphyte and liana cover, and taxonomic IDs. <strong>Project: </strong>This dataset was collected as part of the following SAFE research project: <strong>Above ground net primary productivity</strong> <strong>Funding: </strong>These data were collected as part of research funded by: Sime Darby Foundation (Research grant, SAFE Project) This dataset is released under the CC-BY 4.0 licence, requiring that you cite the dataset in any outputs, but has the additional condition that you acknowledge the contribution of these funders in any outputs. <strong>XML metadata: </strong>GEMINI compliant metadata for this dataset is available here <strong>Files: </strong>This consists of 1 file: TreeCensus11_12.xlsx <strong>TreeCensus11_12.xlsx</strong> This file contains dataset metadata and 1 data tables: <strong>Census11_12</strong> (described in worksheet Census11_12) Description: Census data from 2011 and 2012 Number of fields: 45 Number of data rows: 3507 Fields: <strong>Block</strong>: SAFE sampling block (Field type: id) <strong>Plot</strong>: SAFE plot number (Field type: id) <strong>PlotID</strong>: SAFE plot code (Field type: location) <strong>Stem_suffix</strong>: Stem number; some trees have multiple stems that were measured (Field type: id) <strong>X_m_IND</strong>: x-coordinate of a tree centre [in m] (the centre of the plot marked by PVC tube has xyz coordinates 0, 0, 0) (Field type: numeric) <strong>Y_m_IND</strong>: y-coordinate of a tree centre [in m] (the centre of the plot marked by PVC tube has xyz coordinates 0, 0, 0) (Field type: numeric) <strong>Habit_IND</strong>: Functional type of the tree (Field type: categorical) <strong>Dead_year_IND</strong>: Year of tree death (Field type: numeric) <strong>FirstRecord_year_IND</strong>: year of the first record of a tree (Field type: numeric) <strong>NewRecruit_year_IND</strong>: year of the first record of a new recruit (Field type: numeric) <strong>Note_IND</strong>: Notes (Field type: comments) <strong>FinalFamily</strong>: Family leve ID (Field type: taxa) <strong>FinalGenus</strong>: Genus level ID (Field type: taxa) <strong>FinalSpecies</strong>: Species level ID (Field type: id) <strong>TaxaName</strong>: Taxonomic info to finest resolution available (Field type: taxa) <strong>TaxaLevel</strong>: Taxonomic level identified to (Field type: categorical) <strong>BasedOn</strong>: How was the ID recorded? (Field type: comments) <strong>Confidence</strong>: How reliable is the idenfication? (Field type: categorical) <strong>DeterminationNotes</strong>: Notes related to determining taxonomic ID (Field type: comments) <strong>Species_group</strong>: Functional trait category (Field type: categorical trait) <strong>TagStem_2011</strong>: tree tag number for year 2011; consists of a tree tag number and a stem number where relevant (given as a suffix) (Field type: id) <strong>TagStem_latest</strong>: tree tag number in most recent census; consists of a tree tag number and a stem number where relevant (given as a suffix) (Field type: id) <strong>StemCode_2011</strong>: Set of codes describing features of the tree A=Alive normal;B=Stem broken below POM;C=Leaning stem;D=Fallen;E=Fluted;F=Hollow;G=Rotten;I=No or few leaves;J=Burnt;K=Stem broken above POM;L=Liana &gt;10cm dbh present;M=Main stem of multiple;N=New recruit;O=Lighting damage;P=Cut;Q=Peeling bark;R=Deformed;S=Strangling fig present;T=Is a strangler fig;W#=Liana/climber, entangling tree;X=Dead (mati);Y=Not found (maybe X but not seen);Z=Near death of disease (Field type: comments) <strong>Length_m_2011</strong>: stem (i.e., tree) height [in m] in year 2011 (Field type: numeric trait) <strong>Climber_Upper_2011</strong>: coverage of the upper half of a tree by climber (Field type: ordered categorical) <strong>Epiphyte_2011</strong>: presence of epiphytes on a tree (Field type: ordered categorical) <strong>Fruit_2011</strong>: Proportion of tree canopy with fruit (Field type: ordered categorical trait) <strong>Flower_2011</strong>: Proportion of tree canopy with flowers (Field type: ordered categorical trait) <strong>TreeStemEntered_2011</strong>: tag nr. of the tree that a liana occupies (Field type: id) <strong>HOM_2011</strong>: height of the point of measurement [in m] (typically 1.3 m above the ground) (Field type: numeric) <strong>DPOM_2011_CTFS</strong>: stem diameter at the point of measurement [in mm] (minimum diameter limit: 100 mm), measured 1.3 m along the side of the stem closest to the ground, following the bend of the trunk (CTFS protocol rule) in year 2011 (Field type: numeric trait) <strong>Note_2011_original</strong>: original note for 2011 (Field type: comments) <strong>Note_2011_ms</strong>: note for data cleaning (Field type: comments) <strong>Date_of_DBH_measurement_2011</strong>: date of dbh measurement (Field type: date) <strong>TagStem_2012</strong>: tree tag number for year 2012; consists of a tree tag number and a stem number where relevant (given as a suffix) (Field type: id) <strong>StemCode_2012</strong>: Set of codes describing features of the tree A=Alive normal;B=Stem broken below POM;C=Leaning stem;D=Fallen;E=Fluted;F=Hollow;G=Rotten;I=No or few leaves;J=Burnt;K=Stem broken above POM;L=Liana &gt;10cm dbh present;M=Main stem of multiple;N=New recruit;O=Lighting damage;P=Cut;Q=Peeling bark;R=Deformed;S=Strangling fig present;T=Is a strangler fig;W#=Liana/climber, entangling tree;X=Dead (mati);Y=Not found (maybe X but not seen);Z=Near death of disease (Field type: comments) <strong>Climber_Upper_2012</strong>: coverage of the upper half of a tree by climber (Field type: ordered categorical) <strong>Epiphyte_2012</strong>: presence of epiphytes on a tree (Field type: ordered categorical) <strong>Fruit_2012</strong>: Proportion of tree canopy with fruit (Field type: ordered categorical trait) <strong>Flower_2012</strong>: Proportion of tree canopy with flowers (Field type: ordered categorical trait) <strong>HOM_2012</strong>: height of the point of measurement [in m] (typically 1.3 m above the ground) (Field type: numeric) <strong>DPOM_2012_CTFS</strong>: stem diameter at the point of measurement [in mm] (minimum diameter limit: 100 mm), measured 1.3 m along the side of the stem closest to the ground, following the bend of the trunk (CTFS protocol rule) in year 2011 (Field type: numeric trait) <strong>Note_2012_original</strong>: Field notes about the tree (Field type: comments) <strong>Note_2012_ms</strong>: Notes related to data cleaning (Field type: comments) <strong>Date_of_DBH_measurement_2012</strong>: date of dbh measurement (Field type: date) <strong>Date range: </strong>2010-07-01 to 2012-01-19 <strong>Latitudinal extent: </strong>4.6353 to 4.7714 <strong>Longitudinal extent: </strong>116.9477 to 117.7028 <strong>Taxonomic coverage: </strong><br> All taxon names are validated against the GBIF backbone taxonomy. If a dataset uses a synonym, the accepted usage is shown followed by the dataset usage in brackets. Taxa that cannot be validated, including new species and other unknown taxa, morphospecies, functional groups and taxonomic levels not used in the GBIF backbone are shown in square brackets. - Plantae<br> - - Tracheophyta<br> - - - Liliopsida<br> - - - - Arecales<br> - - - - - Arecaceae<br> - - - - - - <em>Elaeis</em><br> - - - - - - - <em>Elaeis guineensis</em><br> - - - Magnoliopsida<br> - - - - Fagales<br> - - - - - Fagaceae<br> - - - - - - <em>Castanopsis</em><br> - - - - - - <em>Lithocarpus</em><br> - - - - Sapindales<br> - - - - - Anacardiaceae<br> - - - - - - <em>Buchanania</em><br> - - - - - - <em>Gluta</em><br> - - - - - - <em>Parishia</em><br> - - - - - Burseraceae<br> - - - - - Meliaceae<br> - - - - - - <em>Aglaia</em><br> - - - - - - <em>Lansium</em><br> - - - - - - <em>Walsura</em><br> - - - - - - - <em>Walsura pinnata</em><br> - - - - - Rutaceae<br> - - - - - - <em>Melicope</em><br> - - - - - Sapindaceae<br> - - - - - - <em>Dimocarpus</em><br> - - - - - - - <em>Dimocarpus longan</em><br> - - - - - - <em>Nephelium</em><br> - - - - - - <em>Paranephelium</em><br> - - - - - Simaroubaceae<br> - - - - - - <em>Eurycoma</em><br> - - - - - - - <em>Eurycoma longifolia</em><br> - - - - Lamiales<br> - - - - - Lamiaceae<br> - - - - - - <em>Callicarpa</em><br> - - - - - - - <em>Callicarpa pentandra</em><br> - - - - - - <em>Teijsmanniodendron</em><br> - - - - - - - <em>Teijsmanniodendron bogoriense</em><br> - - - - - - - <em>Teijsmanniodendron simplicifolium</em><br> - - - - - - <em>Vitex</em><br> - - - - - Oleaceae<br> - - - - - - <em>Chionanthus</em><br> - - - - Rosales<br> - - - - - Cannabaceae<br> - - - - - - <em>Gironniera</em><br> - - - - - - <em>Trema</em><br> - - - - - Moraceae<br> - - - - - - <em>Artocarpus</em><br> - - - - - - - <em>Artocarpus anisophyllus</em><br> - - - - - - - <em>Artocarpus elasticus</em><br> - - - - - - <em>Ficus</em><br> - - - - - Rhamnaceae<br> - - - - - - <em>Ziziphus</em><br> - - - - - Urticaceae<br> - - - - - - <em>Dendrocnide</em><br> - - - - - - - <em>Dendrocnide elliptica</em><br> - - - - Malpighiales<br> - - - - - Achariaceae<br> - - - - - - <em>Hydnocarpus</em><br> - - - - - Calophyllaceae<br> - - - - - - <em>Calophyllum</em><br> - - - - - Chrysobalanaceae<br> - - - - - - <em>Parinari</em><br> - - - - - - - <em>Parinari oblongifolia</em><br> - - - - - Clusiaceae<br> - - - - - - <em>Garcinia</em><br> - - - - - Euphorbiaceae<br> - - - - - - <em>Blumeodendron</em><br> - - - - - - - <em>Blumeodendron tokbrai</em><br> - - - - - - <em>Endospermum</em><br> - - - - - - - <em>Endospermum diadenum</em><br> - - - - - - <em>Homalanthus</em><br> - - - - - - - <em>Homalanthus populneus</em><br> - - - - - - <em>Koilodepas</em><br> - - - - - - <em>Macaranga</em><br> - - - - - - - <em>Macaranga gigantea</em><br> - - - - - - - <em>Macaranga hypoleuca</em><br> - - - - - - - <em>Macaranga pearsonii</em><br> - - - - - - - <em>Macaranga winkleri</em><br> - - - - - - <em>Mallotus</em><br> - - - - - - - <em>Mallotus macrostachyus</em><br> - - - - - Hypericaceae<br> - - - - - - <em>Cratoxylum</em><br> - - - - - - - <em>Cratoxylum arborescens</em><br> - - - - - Phyllanthaceae<br> - - - - - - <em>Aporosa</em><br> - - - - - - - <em>Aporosa elmeri</em><br> - - - - - - - <em>Aporosa grandistipula</em><br> - - - - - - <em>Baccaurea</em><br> - - - - - - <em>Cleistanthus</em><br> - - - - - - <em>Glochidion</em><br> - - - - - Salicaceae<br> - - - - - - <em>Homalium</em><br> - - - - Ericales<br> - - - - - Actinidiaceae<br> - - - - - - <em>Saurauia</em><br> - - - - - Ebenaceae<br> - - - - - - <em>Diospyros</em><br> - - - - - Lecythidaceae<br> - - - - - - <em>Barringtonia</em><br> - - - - - Pentaphylacaceae<br> - - - - - - <em>Adinandra</em><br> - - - - - Primulaceae<br> - - - - - - <em>Ardisia</em><br> - - - - - Sapotaceae<br> - - - - - Symplocaceae<br> - - - - - - <em>Symplocos</em><br> - - - - Malvales<br> - - - - - Dipterocarpaceae<br> - - - - - - <em>Dipterocarpus</em><br> - - - - - - - <em>Dipterocarpus applanatus</em><br> - - - - - - - <em>Dipterocarpus caudiferus</em><br> - - - - - - - <em>Dipterocarpus confertus</em><br> - - - - - - <em>Dryobalanops</em><br> - - - - - - - <em>Dryobalanops lanceolata</em><br> - - - - - - <em>Hopea</em><br> - - - - - - - <em>Hopea dryobalanoides</em><br> - - - - - - - <em>Hopea nervosa</em><br> - -&en