cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive784.20240510.9
title: Hydrogenibacillus schlegelii (Schenk and Aragno 1981) Kämpfer et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive785.20240510.9
title: Hydrogenibacillus schlegelii (Schenk and Aragno 1981) Kämpfer et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive786.20240510.9
title: Hydrogenibacillus schlegelii (Schenk and Aragno 1981) Kämpfer et al. 2013

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive787.20240510.9
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive788.20240510.9
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive789.20240510.9
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive790.20240916.9.1
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive791.20240510.9
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive792.20240510.9
title: Peribacillus simplex (Priest et al. 1989) Patel and Gupta 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.r7pard
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microkayla colla (De la Riva, Aparicio, Soto & Ríos, 2016)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0296533-210914110416597/datasets/export for details.
DOI: 10.15468/dl.jxrps7
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola steinbachii W.Becker"
 ]
}

 The dataset includes 63 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032335-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471179312
title: Berlin-Karlsruhe - Macromolecular Crystallography BAG - Structural Biology of light-responsive, signal-transducing and metallo- proteins

description: In this project, we aim to investigate the structure-function relationships of various soluble and membrane proteins involved in signal transduction and/or energy conversion. We are analysing different hydrogen-converting oxygen-tolerant [NiFe] hydrogenases under specific environmental conditions. In our work on G protein-coupled receptors (e.g., endothelin receptors, melanocortin receptors or rhodopsin), we study the structures bound to agonists and antagonists as well as in complex with their cognate G proteins to understand the mechanism of signal transduction. We also investigate light-regulated proteins such as phytochromes and DNA photolyases. Here we focus on the detailed analysis of the different intermediates of their photocycle and the understanding of their signalling mechanisms. Other areas of research include microbial rhodopsins, ion pumps and guanylate cyclase-activating proteins.
DOI: 10.15151/esrf-es-1472075411
title: NORWAY BAG

description: The fourteen PIs associated to this proposal represent the entire crystallography community in Norway and are affiliated to the major Norwegian universities. The research interests of the PIs and their collaborators revolves around topics linked to structural biology and material sciences.

We apply for beam time for single- and multi-wavelength MX, Bio-SAXS and Cryo-EM, in support of our research projects funded e.g. by the Research Council of Norway and the ERC. Examples of research projects or topics are carbohydrate-active proteins of medical or bioeconomic relevance, inhibition of DNA repair enzymes, metalloprotein function and catalysis, regulation of cell-cycle processes, enzyme discovery, antibiotic resistance/drug-discovery and neurological diseases.

Our overarching aim is to use bright synchrotron sources to produce high quality science.
DOI: 10.15151/esrf-es-1476094496
title: Structure of metalloproteins, membrane proteins, filamentous sarcomer proteins, and virus particles

description: Our work focusses on biological nitrogen fixation by Nitrogenase, on metalloenzymes and integral membrane proteins of bacterial and archaeal respiratory systems (Andrade/Einsle/Wohlwend), the working mechanism and regulation of medically relevant membrane proteins and complexes and their defects leading to pathologies (Hunte), bacterial antibiotic resistance factors and viral and bacterial proteins bound to their targets or inhibitors, and their interactions with glycans (Stehle/Zocher), human S100 proteins involved in nutritional immunity, USP18 enforcing the endogenous antiviral interferon response, and the respiratory complex NQR of V. cholerae (Fritz), DNA Polymerases with artificial substrates (Benz), and on multi-domain components of the sarcomeric filamentous protein titin and their binding to the E3 ubiquitin ligase MuRF1 and the central myosin rod-domain (Mayans).
DOI: 10.15468/dl.rd3sq4
title: Occurrence Download

description: A dataset containing 347373 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 347373 records from 688 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022467-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjjbp3
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Castanopsis indica (Roxb. ex Lindl.) A.DC.",
 "Year 1950-2023"
 ]
}

 The dataset includes 221 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030100-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471046304
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: The outstanding research questions of our BAG focus on proteins and their complexes involved in a variety of processes, ranging from cell homeostasis (from gene regulation to folding quality control, from energy metabolism to signal transduction) to communication and surface recognition (including trans-interactions between cell adhesion molecules, components of the extracellular matrix weaving, as well as antigen-antibody interactions for vaccine development and optimization). Key to several projects is the characterization of the mechanisms associated to enzyme function in various organisms, including bacteria, viruses, plants, animals and humans for downstream drug discovery campaigns. Emphasis is also given to research focusing on engineering protein and enzymes for future industrial applications, as well as to understand the impact of pathogenic mutations on protein structures, providing a genotype-to-molecular phenotype rationale to disease development.
DOI: 10.15468/dl.3pk4jq
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dendropsophus minimus (Ahl, 1933)"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306314-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1471176520
title: Belgium BAG

description: The Belgium BAG includes groups situated at four Flemish universities: Antwerpen, Brussels, Ghent and Leuven. The proposed projects are highly diverse, including viral, prokaryotic and eukaryotic proteins with a strong focus on targets and processes of biomedical relevance. Many projects deal with membrane proteins, cell surface receptors and protein-protein complexes. Central to the research in the BAG associated groups is the employment of integrative methods in structural biology combining X-ray crystallography, SAXS, and electron microscopy. Many crystals in the various proposed projects are small in size and radiation sensitive, requiring the use of the high brilliance MX beam lines, preferably with micro-focused X-rays.
DOI: 10.15468/dl.dnc98h
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma sakalavense Desc."
 ]
}

 The dataset includes 39 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011744-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhkgzc
title: Occurrence Download

description: A dataset containing 2146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((174.7552 -41.34041,174.79811 -41.34041,174.79811 -41.30559,174.7552 -41.30559,174.7552 -41.34041))",
 "TaxonKey is Insecta"
 ]
}

 The dataset includes 2146 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013956-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1474927818
title: Heidelberg BAG (HeidelBAG)

description: The HeidelBAG unifies structural efforts of EMBL Heidelberg and the Heidelberg University Biochemistry Center (BZH). Central to all projects are large assemblies involved in chromosome organization and transcription control, in nuclear and cytoplasmic RNA regulation, in translational control by ribosome associated factors, in protein targeting and membrane protein insertion, or in post-translational and RNA modification and processing. Nearly all projects make use of integrated structural biology techniques (MX, SAXS/SANS, NMR, cryo-EM) combined with complementary biophysical and AI approaches. MX remains the essential and invariant tool for high resolution information of challenging functional modules. More and more pathological implications of the studied crucial cellular processes come into focus. In the 1st year of the continued proposal, the BAG reports on 8 publications and 25 PDB entries and many unpublished results.
DOI: 10.15151/esrf-es-1476093377
title: BAG Barcelona

description: BAG Barcelona joins 9 groups that belong to two different research institutions: the Institute of Molecular Biology of Barcelona from the Spanish Research Council (IBMB-CSIC) and the Institute for Research in Biomedicine from Barcelona (IRB Barcelona). With a long tradition of accessing the ESRF, the main subjects of research from the BAG groups include protein/DNA complexes, components of viruses, molecular machines, molecular mechanisms of proteases and other enzymes, de-novo design of protein scaffolds and development of crystallopgrahic methods. Our scientific outcomes strongly rely on the excellent performance of ESRF beamlines, from which we are able to retrieve high-quality structural data with the exceptional support from their scientific staff .
DOI: 10.15468/dl.e4j48k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leucanthemum paludosum (Poir.) Pomel, 1875",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306342-210914110416597/datasets/export for details.
DOI: 10.15151/esrf-es-1533085199
title: Cryo-electron microscopy EPN/Grenoble BAG

description: At the EPN campus level structural biology work is carried out in all the 4 institutes (IBS, ESRF, ILL and EMBL). Today all structural biology groups are turning
to cryo-EM. The EM demand is therefore extremely high and present in the 4 Institutes. However there are also some other Research Institutes in Grenoble and we are now proposing that the BAG is extended to them (Cell & Plant Physiology Laboratory LPCV, Grenoble Institut des Neurosciences - GIN, Institute for Advanced Biosciences - IAB)
In a nutshell, there are around 40 PIs that could benefit from Krios time on the EPN campus (more than 100 different samples). 2 Glacios are available on the EPN campus for pre-screening. Whereas some real structural work could be carried out on Glacios microscopes, for difficult samples the use of a krios is indispensable (heterogeneous sample or limited concentration requiring a large number of images; small protein etc). Only these samples will be selected for Krios time at the BAG level.
DOI: 10.15151/esrf-es-1548627015
title: Swiss consortium in macromolecular X-ray crystallography structure determination for academic researchers: EPFL, UNIL, UNIGE and SLS-MX joi

description: This proposal is a joined application by major swiss academic universities; EPFL, UNIL, UNIGE and SLS-MX; and lead by Dr. Florence Pojer, head of the protein Production and Structure core facility at EPFL, an expert in X-ray crystallography with over 20 years experience. The applicants are regular users of the MX beamlines at the Swiss Light Source at PSI. As SLS-PSI will close its door in summer 2023 for 2 years, It is now essential for our community to collect data at ESRF. Moreover, the access to the automated MASSIF-1 beamline, managed by Didier Nurizzo and colleagues, will be an amazing value to our current pipeline. A non exhaustive list of projects by the applicants is presented below. The consortium will need around 14 shifts per 6 months, similar to what they currently are allocated at PSI-SLS. Important note; no application was sent to other synchrotron sources.
DOI: 10.15468/dl.nqum6k
title: Occurrence Download

description: A dataset containing 6256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Nasua narica (Linnaeus, 1766)"
 ]
}

 The dataset includes 6256 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008380-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1533078755
title: Quantifying the effect of pressure drop and fluid expansion on dynamic rock fracturing through synchrotron high-resolution microtomography

description: Rock failure by dynamic unloading is a common mechanical process in the Earth’s crust (earthquakes, underground rock mass excavation) but has been little studied experimentally due to technical challenges. We conceived new experiments deforming water-saturated rocks under virtually instantaneous decompression after being loaded at high pressures and temperatures. Preliminary lab-based X-ray CT suggest that the induced dynamic fracturing is positively correlated with the pressure drops but it is dramatically enhanced when the pore water vaporises/degasses during decompression. Such phase transitions might play a big, so far neglected, role in sustaining the initial stages of dynamic fracturing in the crust. To assess the magnitude of these processes, it is vital to fully quantify the 3D fracture network of the experimental samples to submicrometric resolution through synchrotron-light X-ray microtomography. These unique data can help to close a current knowledge gap in rock mechanics.
DOI: 10.15151/esrf-es-1533082404
title: Time-resolved lipid-mRNA millisecond self-assembly kinetics toward assessment of clinically relevant formulations involving ionizable lipid

description: The aim of the proposal is to investigate the self-assembly process and lyotropic liquid crystalline nanostructural formation of ionizable lipid nanoparticles (LNPs) upon mRNA complexation, on a millisecond time scale using the rapid mixing stopped-flow device combined with the time-resolved SAXS capabilities of the high brilliance ID02 beamline. Driven by the successful clinical use and the exceptional potential of LNPs for mRNA delivery, this proposal will investigate the millisecond kinetics and structural formation of mRNA binding with a range of clinically relevant ionizable LNPs, including the BioNTech/Pfizer COVID-19 Vaccine LNPs (ALC-0315 and ALC-0159), and the Moderna COVID-19 Vaccine LNPs (SM-102 and PEG-DMG).
DOI: 10.15468/dl.4z2ysd
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mantidactylus argenteus Methuen, 1920"
 ]
}

 The dataset includes 55 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0306365-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1533083208
title: Structural solution of the complex phases of dense sodium

description: We have discovered that sodium melting curve exhibits a pronounced minimum at ∼118 gigapascals and 300 kelvin. We also have found seven crystalline phases of Na at around this minimum. Currently, the full structural information of only three out of seven phases (oP8, cI16 and tI19) is available. The remaining phases are incredibly complex, arguably among the most complicated structural configurations observed in the elements - tI50, aP90, oC120 and mP512. The complexity of the phase behavior above 100 gigapascals suggests extraordinary liquid and solid states of sodium at extreme conditions and has implications for other seemingly simple metals.
In the past decade there were several technological advances which reshaped the modern high-pressure experimental single crystal spectroscopy. Using the current detectors, significantly improved diamond anvil cells and powerful software we will solve the structures of the remaining complex phases and look for the new ones.
DOI: 10.15151/esrf-es-1533100306
title: Structure of Mg- and Zr-based metallic glasses under ultra-high pressure

description: The proposed project addresses new thermodynamic path to obtain a high-density amorphous state of glass-forming Mg- and Zr-based alloys through the compression of these materials in a diamond anvil cell (DAC) up to about 100 GPa. This approach is likely to open new possibilities for bulk metallic glass formation. The proposed path involves compression of the supercooled liquid to reach the glass transition temperature Tg, followed by isobaric cooling. Our main goal is to obtain bulk metallic glasses from Mg-Gd and Zr-Cu based alloys under ultra-high pressure and to determine the shift in glass transition temperature as well as the change of the critical glass forming cooling rate. Temperature Tg is to be detected, while changes in the alloys’ short-range order will be studied in-situ by synchrotron pair distribution function (PDF) and a high-resolution transmission electron microscopy (after sample recovery).
DOI: 10.15468/dl.ns4q4n
title: Occurrence Download

description: A dataset containing 1950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Macrochelys temminckii Troost, 1835"
 ]
}

 The dataset includes 1950 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011762-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1487186347
title: HUB Proposal: Human Organ Atlas Hub (HOAHub)

description: This HOAHub will create a physical and virtual Hub which uses HiP-CT to scan whole human organs with local cellular resolution, producing a “Human Organ Atlas in Health and Disease”. It will bridge clinical imaging (centimetre scale) to molecular modalities (nanometer scale), providing unprecedented insights into our bodies, helping cure or mitigate diseases from neuro-degeneration to cancer. The HOAHub will bring together interdisciplinary groups to produce the novel experimental and computational technologies needed to analyse and interpret the scale-bridging data. By transforming HiP-CT into an efficient tool, HOAHub will enable the clinical impact of synchrotron imaging to be realised. Through these scientific and technical efficiencies, HOAHub will not only advance biological, computational and medical fields, it will provide anatomical training resources and a new Gold Standard for validating CT, MRI and 3D histology, inspiring new techniques and real-world clinical insights.
DOI: 10.15468/dl.s2e4rv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylobius abietis (C.Linnaeus, 1758)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is United States of America",
 "Country is United States",
 "Country is United States of America",
 "Country is Canada",
 "Continent is North America"
 ]
 }
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0368619-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-1531407153
title: Intra- versus intergranular strain partitioning and sub-grain orientation gradient at high temperature: strain rate effect on grain boundary

description: Advanced surface characterisation techniques were used to identify microplasticity at high temperature on a polycrystalline nickel-base superalloy at different strain rates. High resolution digital image correlation and laser confocal scanning microscopy aimed at detecting both displacement/height jumps due to discrete slip activity and surface slope due to crystal reorientation. Preliminary results demonstrated the role of the deformation rate on the strain partitioning at grain boundaries, twin boundaries and within grains. The goal of this proposal is to complement surface analyses with volumetric analyses to identify sub-surface onset of damage (cavitation, cracks, etc.) using a combination of diffraction contrast tomography for both grain orientation and morphology and phase contrast tomography for damage identification. Topotomography will document microplasticity in the volume. In-situ PCT and DCT testing will aim at correlating damage development to onset of microplasticity.