cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.553t5/2
title: Optical microscopy dewetted images

description: Optical images of the PC71BM fullerene films processed with 3 % (v/v) DIO. The folder contains an image of the graticule used where 1 teil is 0.01 mm.
DOI: 10.5061/dryad.553t5/3
title: SAXS data

description: Saxs data scaled by transmission but not thickness. The optical images of the capillaries are included for each capillary. The log book detailing which run is which capillary
DOI: 10.5061/dryad.58dm217/1
title: Sutter_Barton_et_al_Behav_Ecol_Data

description: Data on serve speed and accuracy and the outcome of games (win / lose). Information that could identify individual players has been removed, in keeping with archiving guidelines.
DOI: 10.5061/dryad.6jk8416/1
title: Supplementary Data 1

description: Completeness scores, first and last appearences, number of specimens and skull lengths (mm) of the cynodont species included in this study
DOI: 10.5061/dryad.6jk8416/2
title: Supplementary Data 2

description: Source trees used to create the supertree
DOI: 10.5061/dryad.6jk8416/3
title: Supplementary Data 3

description: R object ("hedmans") containing all 100 time calibrated phylogenies.
DOI: 10.5061/dryad.6jk8416/4
title: Supplementary Data 4

description: Characters used to assign percentages to skeletal regions. Characters on the same row are deemed to be identical or non-independent
DOI: 10.5061/dryad.6jk8416/5
title: Supplementary Data 5

description: Percentage score assigned to each skeletal region
DOI: 10.5061/dryad.6jk8416/6
title: Supplementary Data 6

description: Kendall's Tau and p values of correlations between skull length and completeness, using all 100 trees to calculate phylogenetic independent contrasts
DOI: 10.5061/dryad.84g36m4.1/1.1
title: Supplementary Table 1

description: Supplementary Table 1 – 210Pb sediment data (with standard deviations) measures at three stations.
DOI: 10.5061/dryad.84g36m4.1/2.1
title: Supplementary Table 2

description: Supplementary Table 2 – Amino acid racemization and calibrated age data of Corbula gibba from two Po stations (analyzed in this paper), from the Bay of Panzano (Tomasovych et al. 2017, Geology, and analyzed this paper), and from Piran (Mautner et al. 2018, Marine Pollution Bulletin).
DOI: 10.5061/dryad.84g36m4.1/3.1
title: Supplementary code

description: R language source code for age unmixing procedure and for reproduction of some plots and analyses underlying the manuscript.The excel file "Supplementary Table 2" should be saved as tab-delimited txt file. This file is uploaded by the script.
DOI: 10.5061/dryad.8r36rp3/1
title: The coupling identification of 6-MAM-BSA

description: Because of the positive results obtained with morphine immunoassay strips for the detection of 6-MAM, coupling buffers and coupled proteins gave negative results, so the results of the coupling assay were identified using this method.
DOI: 10.5061/dryad.b4vg0.2/10.2
title: Figure S2 data
DOI: 10.5061/dryad.b4vg0.2/12.2
title: Figure S4 data

description: Ingoing links probabilities of each cluster for each type of interaction (3 matrices 14x14)
DOI: 10.5061/dryad.b4vg0.2/13.2
title: Figure S5 data

description: Outgoing links probabilities of each cluster for each type of interaction (3 matrices 14x14)
DOI: 10.5061/dryad.b4vg0.2/14.2
title: Figure S6 data
DOI: 10.5061/dryad.b4vg0.2/16.2
title: Figure S8 data
DOI: 10.5061/dryad.b4vg0.2/17.2
title: Figures S9-10 data

description: Random network keeping the same sequence of in and out degrees as those of the Chilean web.
DOI: 10.5061/dryad.b4vg0.2/18.2
title: Figure S11 data

description: Distance matrix between interaction parameters estimated by the probabilistic modeling for the different clusters.
DOI: 10.5061/dryad.b4vg0.2/19.2
title: Figure S12 data

description: Metadata required to run the regression tree analysis
DOI: 10.5061/dryad.dk5gt88/1
title: data for Dryad Nerlekar 2018 RCH paper

description: Sheet 1 contains the predictor and response variables re-arranged and results for Poisson regression analysis. Sheet 2 contains raw data for ramet density, insect load and relative abundance of each species over samplings.
DOI: 10.5061/dryad.f9v3778/1
title: RESULTSALLSTRAPcomb2

description: Matrices (nexus) and age range data for the 167 datasets analysed, and final results (stratigraphic congruence scores for each tree)
DOI: 10.5061/dryad.g22t8m0/1
title: Final Code and Data

description: All data (.csv format) and R code (.R format) associated with this paper.
DOI: 10.5061/dryad.h4r6h5n/1
title: Figure 2

description: Raw data for Figure 2
DOI: 10.5061/dryad.h4r6h5n/2
title: Figure 3

description: Raw data for Figure 3
DOI: 10.5061/dryad.h4r6h5n/3
title: Figure 4

description: Raw data fir Figure 4
DOI: 10.5061/dryad.h4r6h5n/4
title: Figure 5

description: Raw data for Figure 5
DOI: 10.5061/dryad.h4r6h5n/5
title: Figure 6

description: Raw data for Figure 6
DOI: 10.5061/dryad.h4r6h5n/6
title: Figure 7

description: Raw data for Figure 7
DOI: 10.5061/dryad.h4r6h5n/7
title: Figure 8

description: Calibration curve for Figure 8
DOI: 10.5061/dryad.hq48044/16
title: Raw_data_FIGURE_6_S1
DOI: 10.5061/dryad.hq48044/17
title: Raw_data_FIGURE_6
DOI: 10.5061/dryad.hq48044/18
title: Raw_data_FIGURE_7
DOI: 10.5061/dryad.j8c5j18/10
title: SI4A-Minyomerus_INT_2018_2015_Phylo

description: SI4A Input constraints for the Minyomerus [JF2018]/[JF2015] phylogeny alignment – split-concept resolution. File format: .txt
DOI: 10.5061/dryad.j8c5j18/11
title: SI4B-Minyomerus_INT_2018_2015_Phylo

description: SI4B Input visualization for the SI4A input. File format: .pdf
DOI: 10.5061/dryad.j8c5j18/12
title: SI4C-Minyomerus_INT_2018_2015_Phylo_mir

description: SI4C Set of 925 Maximally Informative Relations (MIR) for the SI4A input. File format: .csv
DOI: 10.5061/dryad.j8c5j18/13
title: SI4D-Minyomerus_INT_2018_2015_Phylo_0_mncb

description: SI4D Alignment visualization for the SI4A input. File format: .pdf
DOI: 10.5061/dryad.j8c5j18/9
title: SI3D-Minyomerus_INT_2018_2015_Phylo_0_mnpw

description: SI3D Alignment visualization for the SI3A input. File format: .pdf
DOI: 10.5061/dryad.kf2553j/12
title: Natural Enemy Abundance R Code

description: This is the R script for analyses of natural enemy abundance.
DOI: 10.5061/dryad.kf2553j/13
title: README file

description: This file contains descriptions of all data files and R scripts.
DOI: 10.5061/dryad.kv573c7/1
title: Appendix_S1

description: Morphological data.
DOI: 10.5061/dryad.kv573c7/2
title: Appendix_S2

description: Metadata for raw sequencing.
DOI: 10.5061/dryad.kv573c7/3
title: Appendix_S3

description: Raw SNP data for samples.
DOI: 10.5061/dryad.kv573c7/4
title: Appendix_S4

description: SNP data for all Arctostaphylos.
DOI: 10.5061/dryad.kv573c7/5
title: Appendix_S5

description: SNP data for smaller set of samples.
DOI: 10.5061/dryad.kv573c7/6
title: Appendix_S6

description: Results of Evanno method for assessing optimal K.
DOI: 10.5061/dryad.kv573c7/7
title: Appendix_S7

description: Results of Evanno Method for assessing optimal K.
DOI: 10.5061/dryad.p3v0kt3/1
title: Ng et al_2018_Functional Ecology_raw data

description: Excel spreadsheet containing the individual data of various life history traits with their protein, carbohydrate and micronutrient intakes.
DOI: 10.5061/dryad.pd40m.1
title: Data from: Force encoding in muscle spindles during stretch of passive muscle
DOI: 10.5061/dryad.pd40m.1/1.1
title: Muscle Spindle Afferent Stretch Recordings from Blum et al. 2017
DOI: 10.5061/dryad.pd40m.2/1.2
title: Muscle Spindle Afferent Stretch Recordings from Blum et al. 2017
DOI: 10.5061/dryad.t3f1tg0/1
title: Environmental Data

description: Raw climatic (WorldClim) and soil (World Harmonized Soil Index) data used in the study.
DOI: 10.5061/dryad.t3f1tg0/2
title: Morphometric Analysis Code

description: R code for the leaf geometric morphometric analyses used in the study.
DOI: 10.5061/dryad.t3f1tg0/3
title: Morphometrics Data

description: Unadjusted leaf geometric morphometrics data used in the study.
DOI: 10.5061/dryad.tv45802/1
title: morpho_data_open
DOI: 10.5061/dryad.tv54037/1
title: Sengupta and Hileman data files
DOI: 10.5061/dryad.vk81vp8/1
title: Straus&Aviles_FuncEcol_Kleptoparasite&NestData

description: Main data file used for analyses and figure generation in paper.
DOI: 10.5061/dryad.vk81vp8/2
title: Straus&Aviles_FuncEcol2018_KleptoHygieneBehav

description: Secondary data file used for Figure 5, Supplemental Figure S3 and corresponding analyses. This file contains raw number of observations for different nest hygiene behaviours.
DOI: 10.17632/44nh835697.1
title: Data for: Roles of aging in the production of a light-flavored Daqu

description: Flavoring substances and high-throughput sequencing data
DOI: 10.17632/bz5bsbg99c.1
title: Interview Guides

description: Semi structured interview guides
DOI: 10.17632/t688vrmhdz.1
title: Data for: Great Himalayan leaf-nosed bats modify vocalizations to communicate threat escalation during agonistic interactions

description: Data on structural parameters of bent upward frequency modulation (bUFM) syllables at low and high aggression intensities and individual signature in aggressive calls of male Hipposideros armiger.
DOI: 10.5061/dryad.1641mj3/1
title: basicdata

description: information collected in the filed, simulated electronically.
DOI: 10.5061/dryad.240t21v/1
title: Phylogenetic trees of archaea, bacteria, fungi and plants

description: RData containing phylogenetic trees of archaea, bacteria, fungi and plants. Five independent phylogenetic trees per biological group are provided. 

Plant and fungal phylogenies were reconstructed after grafting our study species in a supertree derived from the literature. Archaeal and bacterial phylogenies were reconstructed from 16S rRNA sequences using maximum likelihood.
DOI: 10.5061/dryad.3885sv0/1
title: Grouprearing_early instars_rawdata_Lindstedt et al.2017

description: Data from the defensive behaviour and potency of the chemical defende during the group rearing stage of the experiment.
DOI: 10.5061/dryad.3885sv0/2
title: Individual_rearing_later_instars_rawdata_Lindstedt_et_al._2017

description: Data file of life-history traits, defensive behaviour and potency of chemical defence from the individual rearing stage of the experiment.
DOI: 10.5061/dryad.406ms4g/1
title: Processed_microclimate_data

description: This data file contains the daily maximum and minimum temperature, relative humidity, and vapor pressure deficit at each sensor used in the final analysis of the manuscript. It also includes information about the sensor and subplot such as percent canopy cover and sensor height (10 cm or 2 m above ground level).
DOI: 10.5061/dryad.4581cc7/1
title: Astyanax mexicanus updated annotation

description: The PASA v2.0.2 annotation pipeline was employed to incorporate gene structures, including UTRs, into the existing Astyanax mexicanus gene annotation, based on RNA-Seq data.
DOI: 10.5061/dryad.4581cc7/2
title: Danio rerio updated annotation

description: The PASA v2.0.2 annotation pipeline was employed to incorporate gene structures, including UTRs, into the existing Danio rerio gene annotation, based on RNA-Seq data.
DOI: 10.5061/dryad.4581cc7/3
title: Haplochromis burtoni updated annotation

description: The PASA v2.0.2 annotation pipeline was employed to incorporate gene structures, including UTRs, into the existing Haplochromis burtoni gene annotation, based on RNA-Seq data.
DOI: 10.5061/dryad.4581cc7/4
title: Maylandia zebra

description: The PASA v2.0.2 annotation pipeline was employed to incorporate gene structures, including UTRs, into the existing Maylandia zebra gene annotation, based on RNA-Seq data.
DOI: 10.5061/dryad.4jv6312/1
title: ACY3_ASPA Dryad submission

description: Zip archive of RAxML outputs for ACY3/ASPA phylogeny, along with a single output that was amended with the taxonomy.
DOI: 10.5061/dryad.503ds62/1
title: Rea_EVOLUTION OF NUTRIENT RESORPTION ACROSS THE HERBACEOUS GENUS HELIANTHUS_Area-based_leaf_data_20180806

description: Area-based leaf data and climate and soil fertility data for 27 Helianthus species and 1 Phoebanthus species.
DOI: 10.5061/dryad.51t5s6b/1
title: Miller et al. 2018 data

description: The data are prevalence estimates of helminth infections in non-human primates compiled from multiple sources.
DOI: 10.5061/dryad.53k260v/3
title: Transcriptome Markers Oophaga

description: Genotyping of Oophaga individuals based on transcriptome-derived haplotypes described in Table S1
DOI: 10.5061/dryad.53k260v/4
title: Genotypes Microsatellites Oophaga

description: Genotyping of Oophaga individuals based on Microsatellite markers described in Table S1
DOI: 10.5061/dryad.553t5/4
title: SANS_2

description: Log book with file designations and descriptions. Mask file, empty cell, empty beam and sample measurements
DOI: 10.5061/dryad.553t5/5
title: In situ spin coating

description: In situ spin coating measurements, intensity change as a function of time along with the thickness change as a function of timr
DOI: 10.5061/dryad.553t5/6
title: High q (0.8 m SAXS data and SasView Guinier fits)

description: This contains the high q SAXS taken at at 0.8 m along with the sample designation. The extracted data from the Lou et al paper is also included. Fits to all four of the SAXS data using SasView 4.1
DOI: 10.5061/dryad.553t5/7
title: SANS measurement of PC71BM in carbon disulfide

description: SANS measurements taken on the instrument Loq, with the same concentration of 15 mg/ml in the solvent carbon disulfide.
DOI: 10.5061/dryad.56qf11h/1
title: Matlab files and data for hyperparasitoid model

description: The zip file contains the Matlab code to run the simulations and produce figures to show the results. The main file specifies the input parameters and calls other m-files to run simulations. The empirical data plotted along with simulated data are contained in parasitoid_data.mat file.
DOI: 10.5061/dryad.56qf11h/2
title: Diploid male wasp genotype data 2008-2011

description: Microsatellite genotyping data for males of hyperparasitoid Mesochorus cf. stigmaticus.
DOI: 10.5061/dryad.57n3b70/1
title: Data_Random
DOI: 10.5061/dryad.57n3b70/2
title: Data_Strict
DOI: 10.5061/dryad.58180s5/3
title: Interannual populations dynamics of Ambrosia artemsiifolia
DOI: 10.5061/dryad.5f6v8/1
title: Soil data

description: Metal concentrations, pH, Soil organic matter concentrations, coordinates of sampling sites
DOI: 10.5061/dryad.670716m/1
title: SNP data for all common myna samples used in this paper

description: The SNPs provided by DArT and the associated metadata for all common myna samples used in this paper. Explanations for the metadata can be found in the first tab of the spreadsheet. Note: data in the 'ScoringData_SilicoDArT' tab was not used in this study.
DOI: 10.5061/dryad.6q5k86q/1
title: Raw bird count data from waterbird surveys conducted in rice fields of the Sacramento Valley, California.

description: These data were collected from waterbird surveys conducted in rice fields in the Sacramento Valley in February-March 2012 and 2013 to evaluate the effectiveness of a practice called variable drawdown. Columns A-J relate to information about the waterbird survey itself such as date, time, observer, and unique id for survey areas (sitecode-yr). Columns K-U relate to information about the site conditions present during each survey such as proportion dry/moist/or flooded, height of stubble/vegetation, and general survey notes. Columns V-AA relate to information about the survey area such as area (hectare), treatment, and farm. Column AB relates to whether the survey area was removed from the analysis as described in the paper (1=Yes). Columns AC-AG are the waterbirds counted during each survey and the group (guild) they were analyzed with.
DOI: 10.5061/dryad.784vv04/1
title: Full validation corrected_TEB

description: Calibration data for TEB
DOI: 10.5061/dryad.784vv04/2
title: Full validation_BAM

description: Calibration data for BAM
DOI: 10.5061/dryad.784vv04/3
title: synthetic mixequal conc 3.2 micro

description: First derivative synchronous spectra of TEB, BAM and their synthetic mixture (concentration of each 3.2 microgram/mL)
DOI: 10.5061/dryad.881j0ds/1
title: Population level phenotypic survey

description: Common garden experiment performed at Duke greenhouses under long, warm days for annual M. guttatus (AG), inland perennial M. guttatus (IPG), coastal perennial M. guttatus (CPG), M. tilingii (MT), and M. decorus (MD). For each individual we measured 13 life history traits on the day of first flower (FT= days til flower, NF= node of first flower, CL= corolla length, TL= tube length, CW= corolla width, SC= stem thickness,  LL= leaf length, LW= leaf width, IL1= internode length between cotyledons and first true leaf, IL2= internode length between first and second true leaf, NS= number of stolons, SL= length of the longest stolon, SW= width of the longest stolon, SBL= side branch length, SBN= side branch number). Mat.Fam= maternal family, and replicate= sibling number for each maternal family.
DOI: 10.5061/dryad.881j0ds/2
title: IMPxIM_F2 survey

description: F2 mapping for an association between the LG8 inversion and life history traits between annual M. guttatus (IM62) and perennial M. decorus (IMP).
DOI: 10.5061/dryad.881j0ds/3
title: SOPxIM_F2 survey

description: F2 mapping for an association between genotype at the LG8 inversion region and life history traits between annual M. guttatus (IM62) and perennial M. tilingii (SOP7). Several genotypes for markers along the length of the inversion-region are given (marker_number), followed by a region-wide genotype (IM62, SOP7, HET, or REC (recombinant)), followed by the traits measured (on the day of first flower)- FT= days til flower, FN= node of first flower, CW= corolla width, TL= tube length, ST= stem thickness, LL- leaf length, IL1= internode length between cotyledons and first true leaf, IL2= internode length between first and second true leaves, NS= number of stolons.
DOI: 10.5061/dryad.881j0ds/4
title: SOPxIM_F3_fine mapping

description: Fine mapping for 9 lines which comprise 4 recombinant classes (labeled FM1-4; detailed in Coughlan & Willis. 2018. MEC) for several traits measured on the day of first flower (FT= days til flower, FN= node of first flower, TL= tube length, CW= corolla width, ST= stem thickness, IL1= internode length between cotyledons and first true leaf, IL2= internode length between first and second true leaves, NS= number of stolons). Genotype for each individual is listed under 'Genotype', where AA= IM62 homozygote, BB= SOP7 homozygote, and AB= heterozygote.
DOI: 10.5061/dryad.8f8g581/1
title: References

description: References to publications yielding Ecological Register data records
DOI: 10.5061/dryad.8f8g581/2
title: Registers

description: Ecological Register data files for ants, bats, birds, butterflies, dung beetles, frogs, large mammals, lizards, mosquitoes, small mammals, and trees
DOI: 10.5061/dryad.9h95737/1
title: Data

description: The data used in the analyses presented in this paper
DOI: 10.5061/dryad.b4p43t7/1
title: Dataset from Cooney et al "Re-examining a standard proxy for sexual selection: plumage dichromatism is negatively correlated with song divergence in passerine birds"
DOI: 10.5061/dryad.b4p43t7/2
title: Phylogeny from Cooney et al "Re-examining a standard proxy for sexual selection: plumage dichromatism is negatively correlated with song divergence in passerine birds"
DOI: 10.5061/dryad.b4vg0.1
title: Data from: How structured is the entangled bank? The surprisingly simple organization of multiplex ecological networks leads to increased persistence and resilience
DOI: 10.5061/dryad.b4vg0.1/13.1
title: Figure S5 data

description: Outgoing links probabilities of each cluster (matrix 14x14)
DOI: 10.5061/dryad.b4vg0.1/14.1
title: Figure S6 data
DOI: 10.5061/dryad.b4vg0.1/15.1
title: Figure S7 data

description: Each line displays the biomass after the extinction of each of the 14 species. First line is the Chilean web, next lines are the 500 random networks.
DOI: 10.5061/dryad.b4vg0.1/16.1
title: Figure S8 data
DOI: 10.5061/dryad.b4vg0.1/17.1
title: Figures S9-10 data

description: Random network keeping the same sequence of in and out degrees as those of the Chilean web.
DOI: 10.5061/dryad.b4vg0.1/19.1
title: Figure S12 data

description: Metadata required to run the regression tree analysis
DOI: 10.5061/dryad.b4vg0.1/2.1
title: Adjacency matrix for the positive non-trophic layer

description: Same format as chilean-TI.txt. A link between species i and j means that species i is the target of a positive interaction and species j is the source.
DOI: 10.5061/dryad.b4vg0.1/4.1
title: Species properties and information

description: Species properties and information, in Excel format
DOI: 10.5061/dryad.b4vg0.1/5.1
title: ReadMe
DOI: 10.5061/dryad.b4vg0.1/6.1
title: Adjacency matrix for the negative non-trophic layer

description: Adjacency matrix for the negative non-trophic layer. Same format as chilean-TI.txt. A link between species i and j means that species i is the target of a negative interaction and species j is the source.
DOI: 10.5061/dryad.b4vg0.2/15.2
title: Figure S7 data

description: Each line displays the biomass after the extinction of each of the 14 species. First line is the Chilean web, next lines are the 500 random networks.
DOI: 10.5061/dryad.bp25b65/1
title: Cline fitting results

description: Provides information about all SNPs (one SNP per line) that passed filters and where either a model of clinal change provided the best fit (Type=Cline), or the allele frequency difference between cline ends was &lt; 0.1 / the model of no clinal change provided the best fit (Type=NC).
- Contig: Reference genome contig the SNP is located on
- Position: Position of the SNP within the contig
- Type: Whether SNP showed clinal change (Cline) or no change (NC)
- Wave: Whether the reference allele is the more common allele in the Wave ecotype (1) or not (2)
- Centre: Position of the cline centre on the path along the shore (in m)
- Width: Width of the cline (in m)
- p_crab: Allele frequency in the Crab ecotype
- p_diff: Difference between Crab and Wave allele frequency
- Var.Ex: Variance explained by the cline model
- AIC_NC, AIC_cline, AIC_lt, AIC_rt, AIC_bt: AICs for different models (NC, Cline, left-tailed cline, right-tailed cline, two-tailed cline)
- sel: Whether a cline is inconsistent with neutrality, indicating direct or linked selection (i.e. whether Var.Ex is &gt; then the threshold [35.69] defined by simulations)
- LG: Linkage group from genetic map on which SNP is located
- av: Position on the linkage group where SNP is located
DOI: 10.5061/dryad.bp25b65/2
title: Capture probe sequences

description: List of all 40,000 capture sequencing probes used in this study. Note that the probe IDs refer to previous L. saxatilis assemblies and are not meaningful with respect to position in the current assembly.
DOI: 10.5061/dryad.bq3k83n/1
title: Trait data from Expts 1 and 2

description: Data from experiments 1 and 2, in separate spreadsheets
DOI: 10.5061/dryad.ct17vn7/1
title: Data from: Before platelets: the production of platelet activating factor during growth and stress in a basal marine organism

description: Excel file containing the raw data used for all figures.
DOI: 10.5061/dryad.d3kk74r/1
title: README_Sagonas_et_al

description: Readme file containing descriptions of the files deposited for this manuscript
DOI: 10.5061/dryad.d69512q/2
title: Whalen & Briggs - Revised Supplementary Data File

description: Ecomorphological assignments for each genus with references, justifications, relative confidence scores, and additional information
DOI: 10.5061/dryad.f1p501r/1
title: Alund_etal_beheco20170607_data

description: Data on sperm morphology, forehead patch measurements, age, breeding status, clutch size and siring success of male collared flycatchers collected in the field.