cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48530/isoarch.2024.006.v1
title: Dataset of Strontium Isotopic Values of Tooth Enamel of the Eneolithic Individuals Buried at Gumelnița (Romania) together with a Bioavailable Strontium Baseline of the Surroundings (Romania, Bulgaria)

description: This dataset is comprised of 81 strontium isotopic measurements. It includes the results of the analyses performed on 21 human tooth enamel samples from 17 different individuals buried at Gumelnița, Romania. This site belongs to the Kodjadermen-Gumelnița-Karonovo VI (KGK VI) archaeological “culture”, which existed during the second half of the fifth millennium BC in the northern Balkans. In addition, 87Sr/86Sr values of 60 plant samples from 20 different locations (15 in Romania and 5 in Bulgaria; 3 different samples were collected at each location) are included in this set to create a bioavailable strontium (BASr) baseline of the region. Our dataset represents one of the first studies to accurately investigate individual mobility during this crucial period of Eastern European Prehistory, as well as the first attempt to create a BASr baseline in the Lower Danube River Valley.
DOI: 10.5061/dryad.wwpzgmstn
title: Impacts of wild herbivores on soil seed banks are explained by precipitation conditions in protected areas across semi-arid to arid regions

description: Protected areas form the backbone of global conservation efforts.
 Vegetation is the primary foundation for achieving conservation goals, and
 the soil seed bank is a cryptic biodiversity reservoir for recruiting
 species that may not be represented in aboveground vegetation.
 Unfortunately, unmanaged grazing by wild herbivores has led to vegetation
 degradation in semi-arid to arid regions. However, experimental evidence
 on the long-term impacts of wild herbivores on soil seed banks is largely
 lacking. Here, with the aim of examining how wild herbivores impact soil
 seed bank, we investigated the composition of the germinable seed bank in
 three protected areas along a semi-arid to arid precipitation gradient in
 southeastern Australia. The density and species richness of the soil seed
 bank increased with increasing aridity, which indicated that the soil seed
 bank in arid regions is an important biodiversity reservoir. The effects
 of wild herbivores on soil seed density were strongly dependent on
 precipitation. Wild herbivores disrupted the soil seed bank at the most
 arid site but promoted the accumulation of seeds in the soil at the least
 arid site. Grazing was linked to an increase in the frequency of the seeds
 of introduced species and a decrease in the frequency of the seeds of
 perennials. Disruption of the soil seed bank by the grazing of wild
 herbivores could lead to the failure of post-rain pulses of vegetation
 growth and hamper efforts to restore vegetation in protected areas.
 Therefore, suppressing wild herbivore numbers is a strategy that could
 enhance soil seed bank reserves and revegetation efforts in arid protected
 areas.
description: # Impacts of wild herbivores on soil seed banks are explained by
 precipitation conditions in protected areas across semi-arid to arid
 regions
 [https://doi.org/10.5061/dryad.wwpzgmstn](https://doi.org/10.5061/dryad.wwpzgmstn) ## Description of the data and file structure This is a database about the effects of wild herbivores on soil seed banks in three protected areas along a semi-arid to arid precipitation gradient in southeastern Australia. The data includes following dependent variables: the richness of germinated seeds (per tray), the densities of all seeds (per tray), annuals (per tray), perennials (per tray), introduced species (per tray), native species (per tray), grass (per tray), forb (per tray) and shrub (per tray), and the cover of grass (%), forb (%) and shrub (%). ## Code/Software All analyses were conducted in R (version 4.3.1, R Core Team, 2023).
DOI: 10.48530/isoarch.2024.007
title: Bronze Age carbon and nitrogen isotopic values from the area of present-day Czechia

description: To describe changes in diet and/or husbandry practices over the course of the Bronze Age on the territory of present-day Czechia, carbon (δ 13 C) and nitrogen (δ 15 N) isotopic values were measured in bone or tooth collagen from 103 humans and 30 animals (including cattle, sheep/goat, domestic pig, dog, red deer, and aurochs), together with 8 samples of charred cereal grains (einkorn, emmer, spelt, barley, and millet). The dataset was divided into four subgroups according to geographical and chronological contexts: Early (2200–1500 BCE) vs. Late (1300-1020 BCE) Bronze Age, and Bohemia vs. Moravia including archaeological sites of Mikulovice, Brno-Tuřany, Zálezlice, Blučina Cezavy, Hoštice, Ivanovice na Hané, Vyškov-Nouzka, Plačice and Bavoryně.
DOI: 10.48530/isoarch.2024.007.v1
title: Bronze Age carbon and nitrogen isotopic values from the area of present-day Czechia

description: To describe changes in diet and/or husbandry practices over the course of the Bronze Age on the territory of present-day Czechia, carbon (δ 13 C) and nitrogen (δ 15 N) isotopic values were measured in bone or tooth collagen from 103 humans and 30 animals (including cattle, sheep/goat, domestic pig, dog, red deer, and aurochs), together with 8 samples of charred cereal grains (einkorn, emmer, spelt, barley, and millet). The dataset was divided into four subgroups according to geographical and chronological contexts: Early (2200–1500 BCE) vs. Late (1300-1020 BCE) Bronze Age, and Bohemia vs. Moravia including archaeological sites of Mikulovice, Brno-Tuřany, Zálezlice, Blučina Cezavy, Hoštice, Ivanovice na Hané, Vyškov-Nouzka, Plačice and Bavoryně.
DOI: 10.48530/isoarch.2024.008
title: Multi-Isotope Dataset of Human Enamel, Dentine, and Bone from Late Neolithic Legaire Sur, Spain.

description: Legaire Sur (uplands of Álava region), is a recently (2020-21) excavated passage tomb (megalithic monument) that held a minimum number of 25 individuals. This dataset contains the carbon, nitrogen, oxygen, and strontium isotope ratios of 18 individuals, from a multi-tissue sampling study (successional tooth enamel sampling, incremental dentine sampling, and bulk bone collagen sampling). 232 organic samples (δ13C & δ15N) were taken from 18 individuals, and 22 tooth enamel samples (δ13C, δ18O, 87Sr/86Sr, δ88Sr, [Sr]) were taken from 9 individuals. The results provide a high-resolution reconstruction of individual mobility, weaning, and dietary lifeways of those inhumed at the site. Isotope analyses suggest all individuals come from a similar, likely local, geological region, aside from one biological female who presents a notably different geographical birthplace, weaning, and dietary life history than the rest of the burial population. The results from Legaire Sur reveal the complexity of the Late Neolithic-Chalcolithic transition in north-central Iberia, categorising yet another separate socio-economic group with distinctive lifeways inhabiting the region
DOI: 10.48530/isoarch.2024.008.v1
title: Multi-Isotope Dataset of Human Enamel, Dentine, and Bone from Late Neolithic Legaire Sur, Spain.

description: Legaire Sur (uplands of Álava region), is a recently (2020-21) excavated passage tomb (megalithic monument) that held a minimum number of 25 individuals. This dataset contains the carbon, nitrogen, oxygen, and strontium isotope ratios of 18 individuals, from a multi-tissue sampling study (successional tooth enamel sampling, incremental dentine sampling, and bulk bone collagen sampling). 232 organic samples (δ13C & δ15N) were taken from 18 individuals, and 22 tooth enamel samples (δ13C, δ18O, 87Sr/86Sr, δ88Sr, [Sr]) were taken from 9 individuals. The results provide a high-resolution reconstruction of individual mobility, weaning, and dietary lifeways of those inhumed at the site. Isotope analyses suggest all individuals come from a similar, likely local, geological region, aside from one biological female who presents a notably different geographical birthplace, weaning, and dietary life history than the rest of the burial population. The results from Legaire Sur reveal the complexity of the Late Neolithic-Chalcolithic transition in north-central Iberia, categorising yet another separate socio-economic group with distinctive lifeways inhabiting the region
DOI: 10.5061/dryad.rr4xgxdhm
title: Expansion in situ genomic sequencing datasets

description: Microscopy and genomics are both used to characterize cell function, but
 approaches to connect the two types of information are lacking,
 particularly at subnuclear resolution. While emerging multiplexed imaging
 methods can simultaneously localize genomic regions and nuclear proteins,
 their ability to accurately measure DNA-protein interactions is
 constrained by targeting restrictions and the diffraction limit of optical
 microscopy. Here, we describe expansion in situ genome sequencing (ExIGS),
 a technology that enables sequencing of genomic DNA and superresolution
 localization of nuclear proteins in single cells. We applied ExIGS to
 fibroblast cells derived from an individual with Hutchinson-Gilford
 progeria syndrome to characterize how variation in nuclear morphology
 affects spatial chromatin organization. We discovered that lamin
 abnormalities are linked to hotspots of disrupted chromatin regulation
 that may erode cell identity. Further, we show that lamin generally
 represses transcription and posit that variations in nuclear morphology
 may play a regulatory role in tissues and aged cells. These results
 demonstrate that ExIGS may serve as a generalizable platform for
 connecting nuclear abnormalities to changes in gene regulation across
 disease contexts.
description: The table contains reads generating using expansion <em>in
 situ</em> genome sequencing (ExIGS). Please see our manuscript for
 more details.
description: # Expansion in situ genomic sequencing datasets
 [https://doi.org/10.5061/dryad.rr4xgxdhm](https://doi.org/10.5061/dryad.rr4xgxdhm) ## Description of the data and file structure Tables S2-S4 contain spatially-resolved genomic reads generated using expansion *in situ* genome sequencing (ExIGS). Each table contains a description of columns at the top. Table S2 contains ExIGS reads from human skin (control) fibroblasts, Table S3 contains reads from IMR-90 fibroblasts, and Table S4 contains reads from progeria (HGPS) fibroblasts from passage 19, 22, and 25. Table S5 is a list of all cells from Tables S2-S4, as well as summary statistics about the expansion immunofluorescence imaging for each cell. **Change log**\ v1: original upload\ v2: updated table numbers to match revised manuscript, updated new Table S3 with improved SC35 segmentation distances\ v3: added missing author email address
DOI: 10.48530/isoarch.2025.001
title: Carbon and nitrogen isotopic values from the medieval ecclesiastical centre of Stará Boleslav (9th-15th century AD, Czechia)

description: To investigate dietary changes during the Middle Ages, carbon and nitrogen isotopes were measured in bone collagen from 97 humans and 14 animals from the medieval ecclesiastical centre of Stará Boleslav, together with the comparative dataset of 28 humans from Prague-Loretánské Square. The Stará Boleslav dataset was dated between 900 AD and 1450 AD and was divided into three contexts on the basis of burial location (unknown defunct church cemetery vs. the cemetery around the St. Wenceslas Basilica) and chronology: pre-1150 AD and the post-1150 AD phase of the St. Wenceslas Basilica cemetery. The cemetery at Prague Loretánské Square was dated between 950 and 1150 AD. A total of 21 samples from Stará Boleslav also provided radiocarbon dates.
DOI: 10.48530/isoarch.2025.001.v1
title: Carbon and nitrogen isotopic values from the medieval ecclesiastical centre of Stará Boleslav (9th-15th century AD, Czechia)

description: To investigate dietary changes during the Middle Ages, carbon and nitrogen isotopes were measured in bone collagen from 97 humans and 14 animals from the medieval ecclesiastical centre of Stará Boleslav, together with the comparative dataset of 28 humans from Prague-Loretánské Square. The Stará Boleslav dataset was dated between 900 AD and 1450 AD and was divided into three contexts on the basis of burial location (unknown defunct church cemetery vs. the cemetery around the St. Wenceslas Basilica) and chronology: pre-1150 AD and the post-1150 AD phase of the St. Wenceslas Basilica cemetery. The cemetery at Prague Loretánské Square was dated between 950 and 1150 AD. A total of 21 samples from Stará Boleslav also provided radiocarbon dates.
DOI: 10.15468/dl.7nf34m
title: Occurrence Download

description: A dataset containing 136919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Merluccius merluccius",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 136919 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004121-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48530/isoarch.2025.002
title: Isotope and infrared data from five Belgian Gallo-Roman cemeteries.

description: The dataset includes infrared, carbon, and oxygen isotope data from 322 cremated bones across five Belgian Gallo-Roman cemeteries. Three different skeletal elements—cranium, diaphyses of upper/lower limb long bones, and ribs—were sampled from each selected individual. However, due to extensive fragmentation in the Belgian cremated collections, the sampling location varied. In some cases, rib and cranial bones were too fragmented to sample. These data were used to assess variability in burning conditions across the five Gallo-Roman cemeteries.
DOI: 10.48530/isoarch.2025.002.v1
title: Isotope and infrared data from five Belgian Gallo-Roman cemeteries.

description: The dataset includes infrared, carbon, and oxygen isotope data from 322 cremated bones across five Belgian Gallo-Roman cemeteries. Three different skeletal elements—cranium, diaphyses of upper/lower limb long bones, and ribs—were sampled from each selected individual. However, due to extensive fragmentation in the Belgian cremated collections, the sampling location varied. In some cases, rib and cranial bones were too fragmented to sample. These data were used to assess variability in burning conditions across the five Gallo-Roman cemeteries.
DOI: 10.5683/sp3/ymhqbh
title: Integration of Syrian refugees in Canada

description: This study aims to assess the integration of Syrian refugees in Canada. This is the archival dataset of the "Integration of Syrian refugees in Canada" study, which evaluates the experiences of 540 Syrian refugee parents surveyed between March 2021 and March 2022. The dataset includes information on sociodemographic factors, migration experiences, and health-related factors, providing valuable insights into the integration of Syrian refugees in Canada.
description: This second version of the dataset (September 27, 2024) includes two additional variables: 1) Socioeconomic status of respondents, and 2) Dental health of respondents, which is an updated version of the dataset submitted on February 29, 2024. <br>
The third version of the dataset (September 12, 2025) includes four additional variables: 1) Satisfaction with housing, 2) Discrimination in school events, 3) Satisfaction with friends, 4) The Total Computed Family Functioning score, which is an updated version of the dataset submitted on September 27, 2024. <br>
The fourth version of the dataset (January 27, 2026) includes one additional variable: 1) Post-traumatic stress disorder (PTSD), which is an updated version of the dataset submitted on September 12, 2025.<br>
description: The fourth version of the dataset (January 27, 2026) includes one additional variable: 1) Post-traumatic stress disorder (PTSD), which is an updated version of the dataset submitted on September 12, 2025.
DOI: 10.34740/kaggle/dsv/14656271
title: Berita UII
DOI: 10.3929/ethz-b-000745078
title: Dataset from Shake Table Centrifuge Tests of 3D printed Unreinforced Masonry Structures
DOI: 10.3929/ethz-c-000782806
title: Hydraulic stimulation experiments conducted by Geo-Energie Suisse (GES) at BedrettoLab as part of the projects DESTRESS and ZoDrEx
title: Dataset supporting the publication: Updating induced seismic hazard assessments during hydraulic stimulation experiments in underground laboratories: workflow and limitations

description: This dataset contains hydraulic data and documentation of five stimulation experiments that were conducted at the BedrettoLab by Geo-Energie Suisse AG (GES), during the DESTRESS and ZoDrEx projects between 2019 and 2021. Hydraulic stimulation zip folders in this dataset correspond with the first five hydraulic stimulations listed in AppendixA TableA2 in the related publication Gischig, V.S., et al. (2025). Each stimulation experiment contains hydraulic data files, supported by daily reports, documentation of the stimulation concept, field measurements, logbooks, experiment overviews, which provide metadata about the experiment setup, sensor installation and measurements. Hydraulic data are generally raw data files and only a few experiments are supplied with processed data. Note that 2019_2020_Hydrotests_CB1_ST2_ST1.zip contains tests that are excluded from the scientific publication, but are added to this data set for completeness. More information about the contents can be found on the README.txt file in this dataset.
DOI: 10.48530/isoarch.2025.003
title: A landmark compilation of stable isotope data from archaeological contexts in the post-Soviet space

description: This dataset encompasses stable isotope data from 3,191 samples, including hominins (Homo sapiens and Homo neanderthalensis), animals, plants, and ceramics (organic residues), collected from 409 archaeological sites across regions formerly part of the Soviet Union, such as Russia, Kazakhstan, Ukraine, Uzbekistan, Georgia, and Turkmenistan. Compiled from 100 publications, including many originally in local languages like Russian, the dataset spans the Late Pleistocene to the Modern era. The dataset sheds lights on mobility patterns and dietary practices in this region, positioned at the crossroads of Asia, the Middle East, and Europe. It addresses a notable gap in the IsoArcH repository and, more broadly, in most isotope repositories, enriching its collection with data from this historically significant region.
DOI: 10.48530/isoarch.2025.003.v1
title: A landmark compilation of stable isotope data from archaeological contexts in the post-Soviet space

description: This dataset encompasses stable isotope data from 3,191 samples, including hominins (Homo sapiens and Homo neanderthalensis), animals, plants, and ceramics (organic residues), collected from 409 archaeological sites across regions formerly part of the Soviet Union, such as Russia, Kazakhstan, Ukraine, Uzbekistan, Georgia, and Turkmenistan. Compiled from 100 publications, including many originally in local languages like Russian, the dataset spans the Late Pleistocene to the Modern era. The dataset sheds lights on mobility patterns and dietary practices in this region, positioned at the crossroads of Asia, the Middle East, and Europe. It addresses a notable gap in the IsoArcH repository and, more broadly, in most isotope repositories, enriching its collection with data from this historically significant region.
DOI: 10.5061/dryad.qz612jmr7
title: Shaded habitats drive higher rates of fern diversification

description: Modern ferns diversified simultaneously with the rise of angiosperms. This
 pattern is arguably the consequence of ecological opportunities presented
 by shady and moist habitats that emerged with the advent of angiosperm
 dominated habitats. This hypothesis was tested by applying
 phylogenetic comparative methods that investigated the role of shaded
 habitats in fern diversification across 1397 fern species from 37
 families. Our results showed a significant positive correlation
 between the occupancy of shaded habitats and diversification rates across
 the phylogeny of ferns compared to those of open habitats with high
 sunlight. Tests evaluating false correlations using hidden state
 speciation and extinction corroborated this result. Since the onset of the
 Angiosperm Terrestrial Revolution, the diversification rates of
 shade-dwelling ferns has exceeded those of sun-dwelling ferns. Synthesis:
 Our findings support the hypothesis that shaded habitats created by the
 flourishing of angiosperms resulted in the acceleration of fern
 diversification as a consequence of the successful colonization of shaded
 moist habitats in angiosperm dominated forests.
description: # Shaded habitats have higher rates of fern diversification
 [https://doi.org/10.5061/dryad.qz612jmr7](https://doi.org/10.5061/dryad.qz612jmr7) # Description of the data and file structure The data included phylogenetic trees at both the species level (*all_5582.tre*) and family level (*family_37.tre*), light habitat data (*sp_1397.csv*), epiphytic habitat data (*sp_4078.csv*), species containing both light and epiphytic information (*sp_1339.csv*), BAMM analysis output for all fern species (*event_data_2.5_5582.txt*), and the corresponding R script (*codes.txt*). ### Files and variables #### File: data\_ferns.zip **Description:** All of our data and code are included in the zip file. The details are as follows: * **all_5582.tre**: Phylogenetic tree of 5,582 fern species, constructed by Nitta et al. (2022). * **family_37.tre**: Phylogenetic tree of 37 families used in our study for PGLS analysis. * **family_37.csv**: Diversification rates estimated using both stem and crown ages, as well as the shade proportion of the 37 families. * **sp_4078.csv**: Dataset indicating epiphytic (1) and terrestrial (0) habitats, representing shade- and sun-dwelling species, respectively. * **sp_1397.csv**: Dataset indicating sun (1) and shade (0) habitats * **sp_1339.csv**: Dataset categorizing species by epiphytic, terrestrial, sun, and shade habitats. * **event_data_2.5_5582.txt**: BAMM analysis data for all the 5582 species. * **codes.txt**: Code for running the models. ## Code/software All R codes are provided in the file *codes.txt*. Annotations are provided throughout the script.
DOI: 10.48530/isoarch.2025.004
title: Multi-isotope dataset of human, animal and plant samples from Africa

description: This dataset compiles isotopic data from over 4,000 materials and more than 4,000 samples, integrating results from 54 references including peer-reviewed articles, book chapters, and doctoral dissertations. It covers isotopic measurements of carbon (δ¹³C), nitrogen (δ¹⁵N), oxygen (δ¹⁸O), strontium (⁸⁷Sr/⁸⁶Sr), and radiocarbon (¹⁴C) derived from both archaeological and modern samples across 18 African countries such as Botswana, Democratic Republic of Congo, Ethiopia, Kenya, Mali, Mauritania, South Africa, Tunisia, and Zimbabwe. The dataset also includes individuals of African origin living in the United States, reflecting histories linked to the transatlantic slave trade. Chronologically, the dataset covers a remarkable temporal range-spanning millions of years of human and environmental history, from the late Miocene epoch to contemporary contexts.