cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25387/g3.25536280.v1
title: Supplemental Material for Nageshan, Krogan, and Cooper, 2024

description: <strong>Supplementary information:</strong>
<br>
<strong>Table S1</strong>: Unprocessed list of the genes in the top 25th percentile of strength of interaction with the indicated query strains, and corresponding NGR values. Note that NGR value of a target gene represents the effect of that gene deletion on growth at 19°C relative to 30°C in the query mutant background (see methods). Sheet 1 shows a list of positive genetic interactors with <em>taz1D</em>, while Sheets 2-5 show negative genetic interactors with the indicated query mutant.
<br>
<strong>Table S2: </strong>List of genes that show negative genetic interaction specifically with <em>taz1D</em> at 30°C. The first sheet shows gene information along with respective NG and Log2 NG values (see Methods). Sheet 2 shows the GO tags for the genes from Sheet 1. Sheet 3 is a summary of Sheet 2, indicating the number of genes corresponding to each GO tag. In addition, Sheet 4 in Table S2 provides a description of the GO analysis column headings of the table represented in Sheet 2.
<br>
<strong>Table S3:</strong> List of top 25th percentile suppressors of <em>taz1D</em> c/s<em>.</em> The sheet format follows that of Table S2, except that NGR and Log2NGR are presented (see Methods). The high confidence hits determined by the 2-standard deviation method are highlighted in purple in Sheet 1. GO tags and GO analysis summaries for the high confidence hits are presented in Sheets 2 and 3, respectively.
<br>
<strong>Table S4:</strong> List of genes whose deletion reverts the ability of <em>rif1+</em> deletion to suppress <em>taz1D</em> c/s. The sheet format follows that of Table 2, with NGR values. These genes were identified as explained in Figure 3a and b.
DOI: 10.15468/dl.zhqjcd
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella jacquemontii Spring"
 ]
}

 The dataset includes 49 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104798-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e63buz
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomeria ilicina (Ridl.) Schltr."
 ]
}

 The dataset includes 345 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104797-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z4umtr
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schrenkia alaica Pimenov"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104799-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e199861
title: HCMC Urbanization & Housing Price

description: In this project, we measure the levels of urbanization in Ho Chi Minh City and analyze how it influences regional housing prices. Besides, the dynamic panel quantile regression is also employed for the heterogeneous analysis.<br><br>The team of authors presents a replication package comprising datasets and command files. The project involves the integration of two widely used software platforms: Python and STATA 18. <br>(i) First, Python is employed to initiate the process and export the data to an Excel file. (ii) Second, data from public projects is extracted from the provincial authority's website and merged with the existing Excel file. (iii) Lastly, specific datasets are extracted from STATA data files for further statistical analysis.
DOI: 10.15468/dl.4fq8x2
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus pseudargenteus H.E.Weber"
 ]
}

 The dataset includes 197 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104800-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74yje3
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella jagorii Warb."
 ]
}

 The dataset includes 188 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104804-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwsgdt
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schrenkia congesta Korovin"
 ]
}

 The dataset includes 59 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104806-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5c53yv
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomeria novoguineensis L.M.Perry"
 ]
}

 The dataset includes 33 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104803-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm3nc7
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria helenae Albov"
 ]
}

 The dataset includes 51 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104805-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vufdwb
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus pseudincisior H.E.Weber"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104807-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdjzc8
title: Occurrence Download

description: A dataset containing 3836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "TaxonKey is Mytilus galloprovincialis Lamarck, 1819"
 ]
}

 The dataset includes 3836 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104808-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/7938495
title: Travel destinations reviews in Sri Lanka
DOI: 10.5281/zenodo.10932378
title: Clermont validation set

description: This is the validation set presented in [1]. 

It was used to test the validitity of EzClermont.  It includes 125 E. coli genomes where the isolates have had  Clermont phylotypes experimentally determined. 



It is presented here as a benchmark set for other tools implementing in silico prediction of Clermont phylotypes. 

 

[1]: Waters NR, Abram F, Brennan F, Holmes A, Pritchard L. Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool. Access Microbiol. 2020 Jun 19;2(9):acmi000143. doi: 10.1099/acmi.0.000143. PMID: 33195978; PMCID: PMC7656184.
DOI: 10.5281/zenodo.10932379
title: Clermont validation set

description: This is the validation set presented in [1]. 

It was used to test the validitity of EzClermont.  It includes 125 E. coli genomes where the isolates have had  Clermont phylotypes experimentally determined. 



It is presented here as a benchmark set for other tools implementing in silico prediction of Clermont phylotypes. 

 

[1]: Waters NR, Abram F, Brennan F, Holmes A, Pritchard L. Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool. Access Microbiol. 2020 Jun 19;2(9):acmi000143. doi: 10.1099/acmi.0.000143. PMID: 33195978; PMCID: PMC7656184.
DOI: 10.15468/dl.gn7k3t
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schrenkia golickeana (Regel & Schmalh.) B.Fedtsch."
 ]
}

 The dataset includes 128 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104811-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rkwdp
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella jiulongensis (H.S.Kung, Li Bing Zhang & X.S.Guo) M.H.Zhang & X.C.Zhang"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104809-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mq6wjf
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaire général de la biodiversité du domaine du Bois de Bouis (IGB/ATBI) - Inventaire général de la biodiversité (IGB/ATBI) Domaine Bois de Bouis - Données Mollusques continentaux"
 ]
}

 The dataset includes 109 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104810-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r2yv9r
title: Occurrence Download

description: A dataset containing 3438 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus guigna (Molina, 1782)"
 ]
}

 The dataset includes 3438 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104812-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5arp5
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomeria orthophlebia L.M.Perry"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104813-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6zpekj
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria heterophylla Montbret & Aucher ex Benth."
 ]
}

 The dataset includes 46 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104814-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dx453k
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus pseudoacer Makino"
 ]
}

 The dataset includes 170 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104815-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5usk94
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schrenkia hebecarpa (Pimenov & Kamelin) Pimenov"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104817-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7t7xqd
title: Occurrence Download

description: A dataset containing 63786 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Continent derived from coordinates, Country derived from coordinates)",
 "OccurrenceStatus is Present",
 "TaxonKey is Crex crex (Linnaeus, 1758)"
 ]
}

 The dataset includes 63786 records from 272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104785-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbadxh
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella jugorum Hand.-Mazz."
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104818-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvsuer
title: Occurrence Download

description: A dataset containing 560 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomeria serrata (Hochr.) Hochr."
 ]
}

 The dataset includes 560 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104819-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.shh69p
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria heydei Hook.f."
 ]
}

 The dataset includes 49 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104820-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10932210
title: Experiment results for the paper "Uncertainty-Aware Ship Location Estimation using Multiple Cameras in Coastal Areas" to appear in MDM'2024

description: After decompression, there are 16 folders which corresponding to the 16 multi-camera settings in the paper.

 

Under each folder, there are two files: trajs.csv and trajsGuess.csv.

 

1. trajs.csv contains the trajectories of ships that are located inside the monitored area of the mult-camera setting.

    The first four columns are MMSI (ship identity), timestamp, lon, and lat.

    The following columns are the corresponding pixel of the coordinate (lon, lat) in each camera, where (-1,-1) means (lon, lat) is outside the monitored area by a camera.

    A pixel is a pair of integers. 

    xPos1 and yPos1 are for the 1st camera, and xPos2 and yPos2 are for the 2nd camera, and so on so forth.

 

2. trajsGuess.csv contains the estimated ship locations by using the proposed approach in the paper.

    There are 6 columns.

    The 1st column is timestamp.

    The 2nd column is used to distinguish between the different pixel polygon intersections.

    The 3rd column and the 4th column can be either a pixel coordinate or a spatial point coordinate in lon/lat.

    The 5th column is either the cameraID of a pixel, or the order of a boundary point for a spatial polygon. The cameraID starts from 1.

    The 6th column is the type of the record, which can be

            pixel,

            or intersection1 (a polygon),

            or center1 (center of intersection1),

            or intersection2 (a polygon),

            or center2 (center of intersection2).

            Note that intersection2 and center2 appear rarely in the 6th column.
DOI: 10.5281/zenodo.10932211
title: Experiment results for the paper "Uncertainty-Aware Ship Location Estimation using Multiple Cameras in Coastal Areas" to appear in MDM'2024

description: After decompression, there are 16 folders which corresponding to the 16 multi-camera settings in the paper.

 

Under each folder, there are two files: trajs.csv and trajsGuess.csv.

 

1. trajs.csv contains the trajectories of ships that are located inside the monitored area of the mult-camera setting.

    The first four columns are MMSI (ship identity), timestamp, lon, and lat.

    The following columns are the corresponding pixel of the coordinate (lon, lat) in each camera, where (-1,-1) means (lon, lat) is outside the monitored area by a camera.

    A pixel is a pair of integers. 

    xPos1 and yPos1 are for the 1st camera, and xPos2 and yPos2 are for the 2nd camera, and so on so forth.

 

2. trajsGuess.csv contains the estimated ship locations by using the proposed approach in the paper.

    There are 6 columns.

    The 1st column is timestamp.

    The 2nd column is used to distinguish between the different pixel polygon intersections.

    The 3rd column and the 4th column can be either a pixel coordinate or a spatial point coordinate in lon/lat.

    The 5th column is either the cameraID of a pixel, or the order of a boundary point for a spatial polygon. The cameraID starts from 1.

    The 6th column is the type of the record, which can be

            pixel,

            or intersection1 (a polygon),

            or center1 (center of intersection1),

            or intersection2 (a polygon),

            or center2 (center of intersection2).

            Note that intersection2 and center2 appear rarely in the 6th column.
DOI: 10.15468/dl.7ypwae
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus pseudoglotta Drenckh. & W.Jansen"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104821-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sp76ag
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schrenkia involucrata Regel & Schmalh."
 ]
}

 The dataset includes 16 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104822-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rwehsj
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Selaginella kaernbachii Hieron."
 ]
}

 The dataset includes 16 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104823-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vcpcv8
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schizomussaenda henryi (Hutch.) X.F.Deng & D.X.Zhang"
 ]
}

 The dataset includes 403 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104824-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2udb6x
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scutellaria hirta Sm."
 ]
}

 The dataset includes 68 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104825-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e199861v1
title: HCMC Urbanization & Housing Price

description: In this project, we measure the levels of urbanization in Ho Chi Minh City and analyze how it influences regional housing prices. Besides, the dynamic panel quantile regression is also employed for the heterogeneous analysis.<br><br>The team of authors presents a replication package comprising datasets and command files. The project involves the integration of two widely used software platforms: Python and STATA 18. <br>(i) First, Python is employed to initiate the process and export the data to an Excel file. (ii) Second, data from public projects is extracted from the provincial authority's website and merged with the existing Excel file. (iii) Lastly, specific datasets are extracted from STATA data files for further statistical analysis.
DOI: 10.5281/zenodo.10932396
title: loriculus_beryllinus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.5281/zenodo.10932397
title: loriculus_beryllinus_decontaminated_FSCR.fasta.gz

description: .
DOI: 10.15468/dl.h9xqre
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rubus pseudogravetii Sudre"
 ]
}

 The dataset includes 91 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0104826-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e193166
title: Developing Practical Measures of the Price of Pesticide Resistance: A Flexible Computational Framework with Global Sensitivity Analysis

description: Paper abstract: Pesticide resistance poses an increasing challenge foragricultural sustainability. Pesticide susceptibility is adepletable biological resource, but resistance managementrarely quantifies marginal, forward‐looking economiccosts to users of depletion. To facilitate the developmentof such costs, we use a generic stochastic bioeconomicmodel of resistance evolution in a crop pest population,stochastic dynamic programming, and global sensitivityanalysis to analyze the “marginal user costs” of resistance.The most impactful parameters are population densitydependence and pesticide prices. The least impactful isthe fitness cost of resistance, which is noteworthy becauseof prior emphasis on this parameter in the resistancemanagement literature.