cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3619709_d7
title: Additional file 9: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: The values of gene expression in Calvin cycle and photorespiratory metabolism. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d5
title: Additional file 1: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: Differential samples isolated from moso bamboo for RNA-Seq analysis. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d4
title: Additional file 2: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: Relative expression values of RNA-Seq and qRT-PCR in selected 17 genes. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3619709_d3
title: Additional file 8: of Transcriptome and comparative gene expression analysis of Phyllostachys edulis in response to high light

description: Gene and expression of the reactive oxygen species scavenging in moso bamboo. (XLSX 29Â kb)
DOI: 10.15468/dl.g9kfkt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Istiophorus albicans (Latreille, 1804)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032184-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3619517_d2
title: Additional file 4: Table S4. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model predicting overall survival using neutrophil-lymphocyte-ratio (NLR). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619517_d3
title: Additional file 1: Table S1. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model 2 predicting overall survival using platelet-lymphocyte- ratio (PLR). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619517_d1
title: Additional file 2: Table S2. of Preoperative platelet-lymphocyte ratio is superior to neutrophil-lymphocyte ratio as a prognostic factor for soft-tissue sarcoma

description: Multivariate analysis model 2 predicting overall survival using neutrophil-lymphocyte-ratio (NLR). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3619469_d1
title: Additional file 1: of The value of informal care in the context of option B+ in Malawi: a contingent valuation approach

description: Data used in the analysis. (XLSX 130Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d6
title: Additional file 3: Table S2. of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: Differentially expressed protein in RPASMCs treated with PDGF-BB for 12Â h. (XLSX 33Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d4
title: Additional file 5: of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: Differentially expressed miRNA in HPASMCs. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d5
title: Additional file 1: Table S1. of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: Differentially expressed mRNA in RPASMCs treated with PDGF-BB for 12Â h. (XLSX 185Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d3
title: Additional file 6: of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: Primers for qRT-PCR. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d1
title: Additional file 2: of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: GO and KEGG analysis for differentially expressed mRNA. (XLSX 956Â kb)
DOI: 10.6084/m9.figshare.c.3619406_d2
title: Additional file 4: Table S3. of Multi-omics analysis reveals regulators of the response to PDGF-BB treatment in pulmonary artery smooth muscle cells

description: Table S2. Differentially expressed protein in RPASMCs treated with PDGF-BB for 24Â h. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3619385_d1
title: MOESM1 of A water-forming NADH oxidase regulates metabolism in anaerobic fermentation

description: Additional file 1. Results of qRT-PCR of S. cerevisiae and C. acetobutylicum.
DOI: 10.6084/m9.figshare.c.3619253_d8
title: Additional file 7: Table S3. of Dual functions of the ZmCCT-associated quantitative trait locus in flowering and stress responses under long-day conditions

description: Gene symbols and genes co-expressed in HZ4 and HZ4-NIL. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3619262_d8
title: Additional file 5: Table S4. of Genome-wide identification, phylogeny, and expression analysis of pectin methylesterases reveal their major role in cotton fiber development

description: Selective pressure between T. cacao L. and the three cotton species paralogous PMEs gene pairs. (XLSX 23 kb)
DOI: 10.15468/dl.pnaztw
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "GadmGid is CAN.2_1",
 "TaxonKey is Vertigo modesta (Say, 1824)"
 ]
}

 The dataset includes 59 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032185-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619169_d2
title: Additional file 1: Table S1. of Effect of prenatal DHA supplementation on the infant epigenome: results from a randomized controlled trial

description: Global DNA methylation levels at birth across all probes by genomic location. Table S2. Variable methylated regions (VMRs) at birth. Table S3. DMRs between the DHA-supplemented and control group at birth with adjustment for cell mixture. Table S4. DMRs between the DHA-supplemented and control group at birth in males. Table S5. DMRs between the DHA-supplemented and control group at birth in females. Table S6. DMRs between the DHA-supplemented and control group at age 5 years. Table S7. DMRs between the DHA-supplemented and control group at age 5 years in males. Table S8. DMRs between the DHA-supplemented and control group at age 5 years in females. (XLSX 476 kb)
DOI: 10.6084/m9.figshare.c.3619088_d2
title: Additional file 1: Table S1. of Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants

description: Average GC%, size, protein-encoding gene count and density per M. pusilla CCMP1545 chromosome. Finished chromosomes are indicated. Table S2. Ortholog similarity in prasinophytes. The gene fraction is the ortholog count divided by the number of proteins in the smaller set. Table S3. OrthoGroups numbers across the Class II prasinophytes (see also Fig.Â 4) and number of OrthoGroups with &gt;1 protein from the respective taxon in this analysis. Note that the higher redundancy of transcriptome-based proteomes of D. tenuilepis and CCMP2099 is likely due to artefacts of the method used. Table S4. Predicted proteins present in Micromonas and Dolichomastix, but not in Bathycoccus or Ostreococcus. Table S5. Genes encoding proteins in the peptidoglycan biosynthesis pathway identified here in prasinophytes, streptophytes and glaucophytes. Gene IDs from the new annotation generated here as shown in the JGI system (CCMP1545, RCC299, Ostreococcus RCC809), CAMPEP (CCMP2099, D. tenuilepis, N. pyriformis, P. salinarum, G. wittrockiana, see www.iplantcollaborative.org ), Genbank (O. tauri, O. lucimarinus, and B. prasinos) and Phytozome version 11 (all others). tblastn: Gene found using tblastn against the genome (streptophytes) or transcriptome (CCMP2099, D. tenuilepis), no corresponding gene model exists. Table S6. EST support for Viridiplantae peptidoglycan genes (tblastn with predicted peptide, E-value cutoff 10â  15). A maximum of five ESTs are listed for each. Table S7. Signal peptides on Viridiplantae peptidoglycan pathway enzymes found using TargetP. C: Chloroplast; M: Mitochondrion; S: secreted; â  : no signal; n/a: protein was located by tblastn in the genome and no corresponding gene model exists. Table S8. Greencut2 family proteins in prasinophytes. (XLSX 167 kb)
DOI: 10.15468/dl.rta5ew
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctoscopus japonicus (Steindachner, 1881)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 398 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032186-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3619004_d2
title: Additional file 2: Table S1. of Transcriptional maturation of the mouse auditory forebrain

description: Population and quality control data for all A1 and MG samples obtained for total RNA sequencing. For each sample, the following information is provided: region of interest (ROI), age, sex, RNA integrity number (RIN), 28Â s:18Â s ratio, 260/280 ratio. Samples are arranged sequentially by an identifier that is used in all other tables. Table S2. Raw data quality control matrix. Contains information about the sequencing platform, total reads, and sample quality measures. Table S3. Quality control of alignments. For each sample, information about the sequencing platform and mapping details are listed. Table S4. Raw counts of all genes for the 48 samples sequenced.
DOI: 10.15468/dl.hhbfyw
title: Occurrence Download

description: A dataset containing 931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((5.36676 45.62811,7.65966 45.62811,7.65966 47.06603,5.36676 47.06603,5.36676 45.62811))",
 "OccurrenceStatus is Present",
 "TaxonKey is Testudines"
 ]
}

 The dataset includes 931 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032187-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3618986_d4
title: Additional file 5: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports the functional annotation of 99,092 DXWR transcripts from the NCBI NR database using the software blast2go. This file is in the tab delimited format and can be opened using the software Excel. (TXT 12649Â kb)
DOI: 10.6084/m9.figshare.c.3618998_d2
title: Additional file 3: Table S3. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: Pathway enrichment analysis. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3619004_d1
title: Additional file 4: of Transcriptional maturation of the mouse auditory forebrain

description: Differential expression in the MG for age group comparisons with P7 (P7-Adult, P7-P14, P7-P21). Table S9. Differential expression analyses in the MG comparing P7 with Adult using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S10. Differential expression analyses in the MG comparing P7 with P14 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank. Table S11. Differential expression analyses in the MG comparing P7 with P21 using DESeq2, EdgeR, and BaySeq. For each gene, the log2 fold-change, p-values, and rank are listed. The final column (All Rank) is the sum of rankings obtained by all three methods (lowest number = highest rank). Gene listing is ordered from highest to lowest rank.
DOI: 10.6084/m9.figshare.c.3618983_d5
title: Additional file 1: Table S1. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: List of the 41 genomes released in Phytozome v10.1. The version, common name and source of all the genomes are provided. (XLS 23 kb)
DOI: 10.6084/m9.figshare.c.3618998_d1
title: Additional file 1: Table S1. of Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach

description: A complete list of genes identified by text mining. (XLSX 148Â kb)
DOI: 10.6084/m9.figshare.c.3618986_d3
title: Additional file 6: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports 137 KEGG pathways of 4548 DXWR transcripts. This file is in the tab delimited format and can be opened using the software Excel. (TXT 275Â kb)
DOI: 10.6084/m9.figshare.c.3618986_d2
title: Additional file 1: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports 2539 SVs (=links) detected between Dongxiang wild rice and Nipponbare as reference. This file is in the tab delimited format and can be opened using the software Excel. (TXT 1496Â kb)
DOI: 10.6084/m9.figshare.c.3618983_d3
title: Additional file 2: Table S2. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: List of citrus-specific genes (CSGs). The gene accession, chromosome location, GC content of all the citrus-specific genes (CSGs) are provided. (XLS 56 kb)
DOI: 10.6084/m9.figshare.c.3618983_d2
title: Additional file 6: Table S5. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: RNA-Seq data of orphan genes in four sweet orange tissues. (XLS 191 kb)
DOI: 10.6084/m9.figshare.c.3618986_d1
title: Additional file 2: of Genome-wide analysis of Dongxiang wild rice (Oryza rufipogon Griff.) to investigate lost/acquired genes during rice domestication

description: This file reports mapping the 1568 deletions to rice genes in the reference genome. This file is in the tab delimited format and can be opened using the software Excel. (TXT 268Â kb)
DOI: 10.6084/m9.figshare.c.3618983_d1
title: Additional file 3: Table S3. of Identification, characterization and expression analysis of lineage-specific genes within sweet orange (Citrus sinensis)

description: List of orphan genes. The gene accession, chromosome location, GC content of all the orphan genes are provided. (XLS 163 kb)
DOI: 10.6084/m9.figshare.c.3618956_d4
title: Additional file 5: Table S3. of KLHL21, a novel gene that contributes to the progression of hepatocellular carcinoma

description: The dysregulated genes identified from this study. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.c.3618875_d11
title: Additional file 11: Table S6. of Comparative transcript profiling of alloplasmic male-sterile lines revealed altered gene expression related to pollen development in rice (Oryza sativa L.)

description: List of primers used for SSR, RT-qPCR and Southern blotting analysis. (XLSX 101 kb)
DOI: 10.15468/dl.8kyn8p
title: Occurrence Download

description: A dataset containing 694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Kazakhstan, Kyrgyzstan)",
 "Geometry POLYGON((75.44261 41.31043,78.83485 41.31043,78.83485 44.15438,75.44261 44.15438,75.44261 41.31043))",
 "OccurrenceStatus is Present",
 "TaxonKey is Aythya F.Boie, 1822"
 ]
}

 The dataset includes 694 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032189-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpu7a7
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.98453 45.0326,13.89177 44.80577,13.83082 44.91352,13.61613 45.13161,13.58445 45.33347,13.50222 45.4999,13.58517 45.49637,13.76627 45.56587,13.77792 45.66266,13.56107 45.8061,13.50562 45.73457,13.18883 45.79974,13.06185 45.7426,13.12436 45.67303,12.97819 45.64704,12.44363 45.45105,12.5656 45.57732,12.15334 45.42034,12.12597 45.26734,12.25141 45.19281,12.29888 44.99539,12.49199 44.94176,12.2566 44.83428,12.32246 44.26542,12.78412 43.95968,13.50266 43.61443,15.32212 43.78602,15.37961 44.0158,15.14096 44.24307,15.25036 44.24642,15.50103 44.28507,15.08057 44.52081,14.88581 44.73982,14.92166 44.95554,14.83905 45.12028,14.33168 45.36944,13.98453 45.0326))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinna nobilis Linnaeus, 1758",
 "Year 1000-2024"
 ]
}

 The dataset includes 232 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032188-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3618806_d7
title: Additional file 7 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Significant gene sets detected by the GSA. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3618806_d6
title: Additional file 6 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for genes specifically found by maSigPro in comparison with NBMM. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3618806_d5
title: Additional file 1 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for NPDE genes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3618806_d4
title: Additional file 5 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for genes specifically found by NBMM in comparison with maSigPro. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3618806_d2
title: Additional file 4 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for genes specifically found by edgeR in comparison with NBMM. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3618806_d3
title: Additional file 3 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for genes specifically found by NBMM in comparison with edgeR. (XLSX 14 kb)
DOI: 10.15468/dl.vs35t3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichodon japonicus Steindachner, 1881",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032190-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3618806_d1
title: Additional file 2 of Statistical inference for time course RNA-Seq data using a negative binomial mixed-effect model

description: Functional Annotation Clustering for PDE genes. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3618740_d22
title: Additional file 16: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: KEGG pathway enrichment analysis of DEGs screened between T1 and T22. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3618776_d6
title: Additional file 5: of The combined effect of PDX1, epidermal growth factor and poly-L-ornithine on human amnion epithelial cellsâ   differentiation

description: Effect of EGF on mPdx1 transduced hAECs. The qPCR data obtained upon transducing p2 hAECs with 50MOI of the mPdx1 adenovirus is given. One set of cells were grown in the absence of EGF. The statistical calculations are also included. (XLSX 66Â kb)
DOI: 10.6084/m9.figshare.c.3618740_d21
title: Additional file 17: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: GO enrichment analysis of DEGs screened between T2 and T22. (XLSX 93 kb)
DOI: 10.6084/m9.figshare.c.3618740_d20
title: Additional file 5: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Unigenes GO annotation results file. (XLS 107520 kb)
DOI: 10.6084/m9.figshare.c.3618776_d4
title: Additional file 1: Figure S1. of The combined effect of PDX1, epidermal growth factor and poly-L-ornithine on human amnion epithelial cells’ differentiation

description: Comparison of transduction efficiency of various adenoviral titres. (a) hAECs were transduced with adenovirus harbouring an mPdx1 vector at various MOIs (multiplicity of infection). Cells were stained with an mPdx1-specific antibody (Texas-Red conjugate) at 24 h and 48 h post infection to determine the transduction efficiency. Nuclei were counter stained with DAPI (blue). (b) Calculation of transduction efficiency from two different microscopic fields of cells 24 h after transduction with 50 MOI of the mPdx1-harbouring adenovirus. Cells were viewed using the 10X objective of an Olympus inverted fluorescence microscope. Purple nuclei are those that are stained by both DAPI and Texas-Red conjugated secondary antibody. (ZIP 1201 kb)
DOI: 10.6084/m9.figshare.c.3618740_d19
title: Additional file 2: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: N50 statistics of the sequencing data. (XLS 11 kb)
DOI: 10.6084/m9.figshare.c.3618740_d2
title: Additional file 6: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: Unigenes KEGG pathway annotation results file. (XLS 646 kb)
DOI: 10.6084/m9.figshare.c.3618740_d1
title: Additional file 18: of RNA-sequencing of the sturgeon Acipenser baeri provides insights into expression dynamics of morphogenic differentiation and developmental regulatory genes in early versus late developmental stages

description: KEGG pathway enrichment analysis of DEGs screened between T2 and T22. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3618695_d12
title: Additional file 12: Table S7. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

description: The primer sequences used for qRT-PCR amplification. (XLS 22 kb)
DOI: 10.6084/m9.figshare.c.3618695_d9
title: Additional file 2: Table S2. of Transcriptome analyses of seed development in grape hybrids reveals a possible mechanism influencing seed size

description: Correlation coefficients of transcriptome profiles among RNA-seq samples. ‘S’ stands for ‘stage’. (XLS 19 kb)