cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/v8n8c-sdn25
title: Project: storage_granules

description: Session notes: THIS IS A MIXTURE OF DIFFERENT SETTINGS! Tilt series notes: Granules in a collapsed cell. Looks nice. Tomogram notes: Granules inside a collapsed cell wall.
description: <strong>Tilt Series Date:</strong> 2009-04-07</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-04-07-5/rawdata/</p>09apr07a_grid3_016.st,  Tilt Series (Pixel Size 0.95 nm), 989.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09apr07a_grid3_016.rec,  Reconstruction (Pixel Size 1.9 nm), 72.9 MB  
        
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DOI: 10.25574/42179
title: Chandra X-ray Observatory ObsId 42179
DOI: 10.22002/vagqg-1ra86
title: Campylobacter jejuni

description: Session notes: High magnification tomograms of whole WT Campylobacter cells. Tilt series notes: WT Campylobacter Tomogram notes: SIRT reconstruction
description: <strong>Tilt Series Date:</strong> 2011-02-16</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-16-107/rawdata/</p>11feb16a_WTCampy_026.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
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        11feb16a_WTCampy_026_bin2x_SIRT.rec,  Reconstruction (Pixel Size 1.024 nm), 27.0 MB  
        
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DOI: 10.25574/42184
title: Chandra X-ray Observatory ObsId 42184
DOI: 10.15468/dl.d2aaxp
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tanacetum vulgare",
 "Country is Iceland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 35 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040108-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/n61hz-epn38
title: Campylobacter jejuni

description: Session notes: Campy flhBc cells, CTF-corrected then filtered at second zero (0.35, 0.05)... first zero should be around 0.14 Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-02-01</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-02-01-7/rawdata/</p>12feb01a_flhBc_0003.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
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        12feb01a_flhBc_0003.rec,  Reconstruction (Pixel Size 0.08667 nm), 598.6 MB  
        
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DOI: 10.22002/m0kk7-5k602
title: Campylobacter jejuni

description: Session notes: Medium magnification tomograms of fliI knockout Campylobacter cells Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-04-12</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-04-12-10/rawdata/</p>11apr12a_fliI_033.st,  Tilt Series (Pixel Size 0.774 nm), 704.7 MB  
        
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        11apr12a_fliI_033.rec,  Reconstruction (Pixel Size 1.548 nm), 4.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fr2ws-naf03
title: Salmonella typhimurium

description: Session notes: Salomella rabbit ears: 15min penicillin treatment with MgSO4 Tilt series notes: Collapsed cell pole with multiple flagellar filaments. Tomogram notes:  Flagella:378,588,405 (Top view), 696,349,386 (Top view), 120,493,272 (Side view)
description: <strong>Tilt Series Date:</strong> 2010-03-03</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-03-03-15/rawdata/</p>10mar03b_rabbit_ears_gr4_022.mrc,  Tilt Series (Pixel Size 0.632 nm), 738.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        10mar03b_rabbit_ears_gr4_022_part.rec,  Reconstruction (Pixel Size 1.264 nm), 524.3 MB  
        
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DOI: 10.22002/d6pq3-8dq13
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-2/rawdata/</p>12sep28a_cjj0413_0005.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
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        12sep28a_cjj0413_0005.rec,  Reconstruction (Pixel Size 1.12 nm), 41.5 MB  
        
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DOI: 10.15468/dl.3ezzn4
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tsuga dumosa",
 "Country is Nepal",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 62 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040109-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/pz27b-zcm52
title: Salmonella typhimurium

description: Session notes: Salomella rabbit ears: 45min penicillin treatment with sucrose and MgSO4 Tilt series notes: Cell in the process of collapsing, yet seemingly still in good shape. Tomogram notes: Very disrupted cell. Flagella:160,485,324 (Top view), 493,560,310 (Top view), 615,708,315 (Top view) Chemoreceptors:376,974,400 (Top view)
description: <strong>Tilt Series Date:</strong> 2010-03-02</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor3</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-03-02-7/rawdata/</p>10mar02e_rabbit_ears_016.mrc,  Tilt Series (Pixel Size 0.632 nm), 738.2 MB  
        
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        10mar02e_rabbit_ears_016_full.rec,  Reconstruction (Pixel Size 1.264 nm), 524.3 MB  
        
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DOI: 10.22002/02mwg-xm746
title: Campylobacter jejuni

description: Session notes: flgP deletion Campy mutants Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-08-10</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-08-10-28/rawdata/</p>11aug10a_flgP_0034.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11aug10a_flgP_0034_bin2x_SIRT_trim.rec,  Reconstruction (Pixel Size 1.024 nm), 32.1 MB  
        
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DOI: 10.15468/dl.qpmsvz
title: Occurrence Download

description: A dataset containing 265398 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-79.202 -4.24904,-78.78971 -4.24904,-78.78971 -3.74344,-79.202 -3.74344,-79.202 -4.24904))"
 ]
}

 The dataset includes 265398 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002758-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15397055
title: Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI: Raw Data

description: Raw data to accompany Spencer et al., "Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI", Nature Communications, 2025.

Please cite this paper if you use this dataset:

Spencer, A. P. C., Nguyen-Duc, J., de Riedmatten, I., Szczepankiewicz, F., & Jelescu, I. O. (2025). Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI. Nature Communications, 16(1), 1-12. https://doi.org/10.1038/s41467-025-60357-5
DOI: 10.5281/zenodo.15397056
title: Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI: Raw Data

description: Raw data to accompany Spencer et al., "Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI", Nature Communications, 2025.

Please cite this paper if you use this dataset:

Spencer, A. P. C., Nguyen-Duc, J., de Riedmatten, I., Szczepankiewicz, F., & Jelescu, I. O. (2025). Mapping grey and white matter activity in the human brain with isotropic ADC-fMRI. Nature Communications, 16(1), 1-12. https://doi.org/10.1038/s41467-025-60357-5
DOI: 10.15468/dl.dckybn
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014811-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24y8dm
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-250.0",
 "Geometry POLYGON((47 52.5,55 52.5,55 57.5,47 57.5,47 52.5))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cirsium canum (L.) All."
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014813-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15472/77oqax
title: Composición florística y estructura de una parcela permanente en bosques humedos tropicales del resguardo Emberá Chontadural, municipio de Mutatá, Antioquia

description: Bajo el convenio 14-075 Monitoreo de la Biodiversidad en las Parcelas Permanentes de los Proyectos REDD+ establecidas en el marco del Programa BIOREDD+ entre la Agencia de los Estados Unidos para el Desarrollo Internacional (USAID) y el Instituto de Investigación de Recursos Biológicos Alexander von Humboldt se llevó a cabo la caraceterización y levantamiento de la línea base de monitoreo de una parcela permanente de 1 ha establecida por CARBONO Y BOSQUES en el 2015, cuya ubicación corresponde al bosque húmedo tropical del resguardo indígena Emberá, asentamiento en Chontadural, municipio de Mutatá (departamento del Antioquia). En este proceso se realizó el marcaje de todos los individuos con DAP mayor a 10 cm (medido a 1.30 m), la identificación taxonómica de cada uno y el registro de variables estructurales como el diámetro del tallo y altura total. Se obtuvo un total de 553 registros que corresponden a 42 familias, 113 géneros y 170 especies, del total de individuos 16 se identidicaron hasta la categoría de reino. Las familias botánicas con mayor número de especies fueron: Fabaceae (21), Euphorbiaceae (13), Moraceae (13).
DOI: 10.25549/inscriptifact-ouc110832094
title: Persepolis Fortification Elamite Tablet 0358, PF-NN 0358

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0358 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, upper edge. ❧ [Physical Object Note:] Some damage on bottom edge, left edge. Right edge broken off. Gouge and small cracks on obverse, small cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110832434
title: Persepolis Fortification Elamite Tablet 0358, PF-NN 0358

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0358 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, upper edge. ❧ [Physical Object Note:] Some damage on bottom edge, left edge. Right edge broken off. Gouge and small cracks on obverse, small cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110832380
title: Persepolis Fortification Elamite Tablet 0358, PF-NN 0358

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0358 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, upper edge. ❧ [Physical Object Note:] Some damage on bottom edge, left edge. Right edge broken off. Gouge and small cracks on obverse, small cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110832375
title: Persepolis Fortification Elamite Tablet 0358, PF-NN 0358

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0358 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, upper edge. ❧ [Physical Object Note:] Some damage on bottom edge, left edge. Right edge broken off. Gouge and small cracks on obverse, small cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110832032
title: Persepolis Fortification Elamite Tablet 0358, PF-NN 0358

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] PF-NN 0358 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, upper edge. ❧ [Physical Object Note:] Some damage on bottom edge, left edge. Right edge broken off. Gouge and small cracks on obverse, small cracks on reverse.
DOI: 10.25549/inscriptifact-ouc110825994
title: Persepolis Fortification Elamite Tablet 2293.105, Fort 2293.105

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2293.105 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on upper edge? ❧ [Physical Object Note:] Upper section of tablet is broken off. Cracks on obverse, reverse.
DOI: 10.15468/dl.j58hu3
title: Occurrence Download

description: A dataset containing 5043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phenacobius mirabilis",
 "Year 1970-2020"
 ]
}

 The dataset includes 5043 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029134-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110825871
title: Persepolis Fortification Elamite Tablet 2293.104, Fort 2293.104

description: [Text Description:] Administrative text with seals ❧ [Text or Publication Number Note:] Fort 2293.104 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on left edge, reverse. ❧ [Physical Object Note:] Large pieces of lower tablet missing, leaving only part of the bottom edge. Right edge broken.