cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14325462
title: POLYCHLORINATED DIBENZO-P-DIOXINS, DIBENZOFURANS, AND BIPHENYLS IN FREGATA MAGNIFICENS FROM ILHA GRANDE BAY, RIO DE JANEIRO STATE, SOUTH-EASTERN BRAZIL

description: The purpose of this paper is to perform analyses in a fish-eating seabird species which is recognized to be at risk of accumulating toxic contaminants due to its high position in the trophic web and to its low ability to metabolize xenobiotic compounds. Fregata magnificens were collected at Ilha Grande Bay, Rio de Janeiro, Brazil (23°8'26"S, 44°14'50"W) between February, 2009 and April, 2013. Polychlorinated dibenzo-p-dioxins (PCDDs), dibenzofurans (PCDFs), and polychlorinated biphenyls (PCBs), were analyzed in tissue composites, being subsequently identified and quantified using gas chromatography coupled with mass spectrometry. The concentrations were below the range of concern established by World Health Organization. The sum of PCB-congeners analyzed had the concentration of 968 pg/g lipid weight, and 13.9 pg TEQ/g lipid weight. The PCDD/F-congeners analyzed had the concentration of 331.04 pg/g lipid weight, and 13.4 pg TEQ/g lipid weight. This type of study aims to integrate information from analyses of seabirds with halogenated hydrocarbons and could also make contribution to the scientific support for political decisions on coastal zone management.
DOI: 10.6084/m9.figshare.14325465
title: GENOTOXICITY OF SHALLOW WATERS NEAR THE BRAZILIAN ANTARCTIC STATION "COMANDANTE FERRAZ" (EACF), ADMIRALTY BAY, KING GEORGE ISLAND, ANTARCTICA

description: Series of biomonitoring surveys were undertaken weekly in February 2012 to investigate the genotoxicity of the shallow waters around the Brazilian Antarctic Station "Comandante Ferraz" (EACF). The comet assay was applied to assess the damage to the DNA of hemocytes of the crustacean amphipods Gondogeneia antarctica collected from shallow waters near the Fuel Tanks (FT) and Sewage Treatment Outflow (STO) of the research station, and compare it to the DNA damage of animals from Punta Plaza (PPL) and Yellow Point (YP), natural sites far from the EACF defined as experimental controls. The damage to the DNA of hemocytes of G. antarctica was not significantly different between sites in the biomonitoring surveys I and II. In survey III, the damage to the DNA of animals captured in shallow waters near the Fuel Tanks (FT) and Sewage Treatment Outflow (STO) was significantly higher than that of the control site of Punta Plaza (PPL). In biomonitoring survey IV, a significant difference was detected only between the FT and PPL sites. Results demonstrated that the shallow waters in front of the station may be genotoxic and that the comet assay and hemocytes of G. antarctica are useful tools for assessing genotoxicity in biomonitoring studies of Antarctic marine coastal habitats.
DOI: 10.6084/m9.figshare.14325466.v1
title: COMMUNITY STRUCTURE OF THE TINTINNIDS (CILIOPHORA: SPIROTRICHEA) IN THE REGION OF ABROLHOS (BAHIA, BRAZIL)

description: The tintinnid community in the region of Abrolhos (Bahia, Brazil) was studied during February 2012. We hypothesized that the tintinnid community structure varies significantly over a short temporal scale (photoperiod), as well as spatially over a short scale (on and away from the reefs), and a broad scale (distance of the reef area from the coast). Three areas in Abrolhos were studied. Two sampling points were delimited in each area, where the tintinnids were collected by horizontal subsurface plankton net (20 μm mesh-size) hauls. Sampling was undertaken every 6 hours, during 24 hours in each area. 24 species were found, all of which are of neritic, cosmopolitan, and of warm-water distribution. The only hypothesis that is not rejected is that related to variability on an extensive spatial scale. There are significant differences between the samples collected in the three areas studied (ANOVA p = 0.017). The clustering of the species highlights a continent-ocean gradient. There is one community typical of the internal arc, composed mainly of neritic agglutinated tintinnids, and another community typical of the external arc, composed mainly of hyaline warm-water and cosmopolitan tintinnids. The factor which exercises the greatest influence on the tintinnid community in the Abrolhos region is the distance from the coast.
DOI: 10.6084/m9.figshare.14325465.v1
title: GENOTOXICITY OF SHALLOW WATERS NEAR THE BRAZILIAN ANTARCTIC STATION "COMANDANTE FERRAZ" (EACF), ADMIRALTY BAY, KING GEORGE ISLAND, ANTARCTICA

description: Series of biomonitoring surveys were undertaken weekly in February 2012 to investigate the genotoxicity of the shallow waters around the Brazilian Antarctic Station "Comandante Ferraz" (EACF). The comet assay was applied to assess the damage to the DNA of hemocytes of the crustacean amphipods Gondogeneia antarctica collected from shallow waters near the Fuel Tanks (FT) and Sewage Treatment Outflow (STO) of the research station, and compare it to the DNA damage of animals from Punta Plaza (PPL) and Yellow Point (YP), natural sites far from the EACF defined as experimental controls. The damage to the DNA of hemocytes of G. antarctica was not significantly different between sites in the biomonitoring surveys I and II. In survey III, the damage to the DNA of animals captured in shallow waters near the Fuel Tanks (FT) and Sewage Treatment Outflow (STO) was significantly higher than that of the control site of Punta Plaza (PPL). In biomonitoring survey IV, a significant difference was detected only between the FT and PPL sites. Results demonstrated that the shallow waters in front of the station may be genotoxic and that the comet assay and hemocytes of G. antarctica are useful tools for assessing genotoxicity in biomonitoring studies of Antarctic marine coastal habitats.
DOI: 10.6084/m9.figshare.14325466
title: COMMUNITY STRUCTURE OF THE TINTINNIDS (CILIOPHORA: SPIROTRICHEA) IN THE REGION OF ABROLHOS (BAHIA, BRAZIL)

description: The tintinnid community in the region of Abrolhos (Bahia, Brazil) was studied during February 2012. We hypothesized that the tintinnid community structure varies significantly over a short temporal scale (photoperiod), as well as spatially over a short scale (on and away from the reefs), and a broad scale (distance of the reef area from the coast). Three areas in Abrolhos were studied. Two sampling points were delimited in each area, where the tintinnids were collected by horizontal subsurface plankton net (20 μm mesh-size) hauls. Sampling was undertaken every 6 hours, during 24 hours in each area. 24 species were found, all of which are of neritic, cosmopolitan, and of warm-water distribution. The only hypothesis that is not rejected is that related to variability on an extensive spatial scale. There are significant differences between the samples collected in the three areas studied (ANOVA p = 0.017). The clustering of the species highlights a continent-ocean gradient. There is one community typical of the internal arc, composed mainly of neritic agglutinated tintinnids, and another community typical of the external arc, composed mainly of hyaline warm-water and cosmopolitan tintinnids. The factor which exercises the greatest influence on the tintinnid community in the Abrolhos region is the distance from the coast.
DOI: 10.6084/m9.figshare.14325471
title: Tidal effects on short-term mesozooplankton distribution in small channels of a temperate-turbid estuary, Southwestern Atlantic

description: Abstract The short-term variability of mesozooplankton distribution and physicochemical variables was examined in two different channels of the Bahía Blanca Estuary, Argentina, during two tidal cycles. All the physicochemical measurements and mesozooplankton sampling were performed at a fixed site during approximately 22-23 h at 3-h intervals. Pumps were used to obtain surface and bottom mesozooplankton samples and the water speed of each stratum was measured with an Acoustic Doppler Current Profiler (ADCP). In all, 23 mesozooplanktonic taxa belonging to four phyla (Arthropoda, Annelida, Echinodermata and Chordata) were identified. The most abundant taxa during the two tidal cycles were Balanus glandula larvae, Eurytemora americana and Acartia tonsa. A discernible variability in the water conditions and vertical mesozooplankton distribution (VMD) different from that known for the estuary's main channel, was found in the other two selected channels. VMD varied during the tidal cycle in both channels in accordance with the channel's geomorphology and water dynamic characteristics of each of them. The variation of the abundance of the different taxa during ebb and flood currents might indicate the existence of a tidal vertical migration of the mesozooplankton as a response to particular dynamic water conditions.
DOI: 10.6084/m9.figshare.14325469
title: THE STRUCTURE OF SUBTIDAL MACROALGAL ASSEMBLAGES AT THE TAMOIOS ECOLOGICAL STATION, A THREATENED CONSERVATION UNIT IN RIO DE JANEIRO, BRAZIL

description: The structure of subtidal rocky bottom communities at Tamoios Ecological Station (TES), situated in Ilha Grande Bay, Rio de Janeiro State, as well as in other Brazilian marine protected areas, is insufficiently characterized. The present study describes the macroalgal assemblages of shallow subtidal rocky bottoms on two islands of the TES-Imboassica (IM) and Búzios Pequena (BP)adopting species and genera as observational units. Two sites were surveyed on each island in summer 2011. Random 30x30 cm quadrats (n=3) were scraped to collect all macroalgae except crustose species. The subtidal assemblages, in which 58 macroalgal species occurred, were characterized by the high frequency and percent cover of Sargassum vulgare C. Agardh (56.8±8.4%). The sites differed significantly in total number of species and Shannon-Weiner diversity index (PERMANOVA, p&lt;0.05). According to SIMPER, the macroalgal genera that most contributed to the dissimilarities of cover between the sites (contribution &gt;5%) were Sargassum, Laurencia, Wrangelia, Canistrocarpus, Asparagopsis, Hypnea, Ceratodictyon, Gayliella, Spyridia and Chondria.Dissimilarities within and between the islands, as shown by nMDS of the cover data, suggest that different spatial scales should be considered in monitoring the rocky bottom communities of Ilha Grande Bay.
DOI: 10.6084/m9.figshare.14325469.v1
title: THE STRUCTURE OF SUBTIDAL MACROALGAL ASSEMBLAGES AT THE TAMOIOS ECOLOGICAL STATION, A THREATENED CONSERVATION UNIT IN RIO DE JANEIRO, BRAZIL

description: The structure of subtidal rocky bottom communities at Tamoios Ecological Station (TES), situated in Ilha Grande Bay, Rio de Janeiro State, as well as in other Brazilian marine protected areas, is insufficiently characterized. The present study describes the macroalgal assemblages of shallow subtidal rocky bottoms on two islands of the TES-Imboassica (IM) and Búzios Pequena (BP)adopting species and genera as observational units. Two sites were surveyed on each island in summer 2011. Random 30x30 cm quadrats (n=3) were scraped to collect all macroalgae except crustose species. The subtidal assemblages, in which 58 macroalgal species occurred, were characterized by the high frequency and percent cover of Sargassum vulgare C. Agardh (56.8±8.4%). The sites differed significantly in total number of species and Shannon-Weiner diversity index (PERMANOVA, p&lt;0.05). According to SIMPER, the macroalgal genera that most contributed to the dissimilarities of cover between the sites (contribution &gt;5%) were Sargassum, Laurencia, Wrangelia, Canistrocarpus, Asparagopsis, Hypnea, Ceratodictyon, Gayliella, Spyridia and Chondria.Dissimilarities within and between the islands, as shown by nMDS of the cover data, suggest that different spatial scales should be considered in monitoring the rocky bottom communities of Ilha Grande Bay.
DOI: 10.6084/m9.figshare.14325471.v1
title: Tidal effects on short-term mesozooplankton distribution in small channels of a temperate-turbid estuary, Southwestern Atlantic

description: Abstract The short-term variability of mesozooplankton distribution and physicochemical variables was examined in two different channels of the Bahía Blanca Estuary, Argentina, during two tidal cycles. All the physicochemical measurements and mesozooplankton sampling were performed at a fixed site during approximately 22-23 h at 3-h intervals. Pumps were used to obtain surface and bottom mesozooplankton samples and the water speed of each stratum was measured with an Acoustic Doppler Current Profiler (ADCP). In all, 23 mesozooplanktonic taxa belonging to four phyla (Arthropoda, Annelida, Echinodermata and Chordata) were identified. The most abundant taxa during the two tidal cycles were Balanus glandula larvae, Eurytemora americana and Acartia tonsa. A discernible variability in the water conditions and vertical mesozooplankton distribution (VMD) different from that known for the estuary's main channel, was found in the other two selected channels. VMD varied during the tidal cycle in both channels in accordance with the channel's geomorphology and water dynamic characteristics of each of them. The variation of the abundance of the different taxa during ebb and flood currents might indicate the existence of a tidal vertical migration of the mesozooplankton as a response to particular dynamic water conditions.
DOI: 10.6084/m9.figshare.14325475.v1
title: Comparison of the effects of two bongo net mesh sizes on the estimation of abundance and size of Engraulidae eggs

description: Abstract Studies of ichthyoplankton retention by nets of different mesh sizes are important because they help in choosing a sampler when planning collection and the establishment of correction factors. These factors make it possible to compare studies performed with nets of different mesh sizes. In most studies of mesh retention of fish eggs, the taxonomic identification is done at the family level, resulting in the loss of detailed information. We separated Engraulidae eggs, obtained with 0.333 mm and 0.505 mm mesh bongo nets at 172 oceanographic stations in the southeastern Brazilian Bight, into four groups based on their morphometric characteristics. The difference in the abundance of eggs caught by the two nets was not significant for those groups with highest volume, types A and B, but in type C (Engraulis anchoita), the most eccentric, and in type D, of the smallest volume, the difference was significant. However, no significant difference was observed in the egg size sampled with each net for E. anchoita and type D, which exhibited higher abundance in the 0.333 mm mesh net and minor axis varying from 0.45-0.71 mm, smaller than the 0.505 mm mesh aperture and the mesh diagonal.
DOI: 10.6084/m9.figshare.14325475
title: Comparison of the effects of two bongo net mesh sizes on the estimation of abundance and size of Engraulidae eggs

description: Abstract Studies of ichthyoplankton retention by nets of different mesh sizes are important because they help in choosing a sampler when planning collection and the establishment of correction factors. These factors make it possible to compare studies performed with nets of different mesh sizes. In most studies of mesh retention of fish eggs, the taxonomic identification is done at the family level, resulting in the loss of detailed information. We separated Engraulidae eggs, obtained with 0.333 mm and 0.505 mm mesh bongo nets at 172 oceanographic stations in the southeastern Brazilian Bight, into four groups based on their morphometric characteristics. The difference in the abundance of eggs caught by the two nets was not significant for those groups with highest volume, types A and B, but in type C (Engraulis anchoita), the most eccentric, and in type D, of the smallest volume, the difference was significant. However, no significant difference was observed in the egg size sampled with each net for E. anchoita and type D, which exhibited higher abundance in the 0.333 mm mesh net and minor axis varying from 0.45-0.71 mm, smaller than the 0.505 mm mesh aperture and the mesh diagonal.
DOI: 10.6084/m9.figshare.14325477
title: Juvenile fish use of the shallow zone of beaches of the Cananéia-Iguape coastal system, southeastern Brazil

description: Abstract The purpose of the present study is to describe the juvenile fish use of the shallow zone of beaches of the Cananéia-Iguape coastal system, São Paulo, Brazil, analyzing its occurrence period and the patterns of utilization for the most abundant species. Using a beach seine monthly for one year, we sampled 13861 individuals, of 57 species and 24 families. The fish species used the study area for different proposes: Atherinella brasiliensis was sampled in all phases of gonadal development and considered as resident, juveniles of Trachinotus goodei used the beaches for growth and juveniles of Mugil curema and Mugil liza used the beaches as a route from the ocean to the estuary. Our results showed the importance of the sandy beaches for juvenile fish, especially in spring and summer when most juveniles occur and recruit. Unfortunately, this is the period of the most intense tourist activity. As many of the species studied are commercially important, this study highlighted the necessity of coastal habitat preservation for better fishery management.
DOI: 10.6084/m9.figshare.14325477.v1
title: Juvenile fish use of the shallow zone of beaches of the Cananéia-Iguape coastal system, southeastern Brazil

description: Abstract The purpose of the present study is to describe the juvenile fish use of the shallow zone of beaches of the Cananéia-Iguape coastal system, São Paulo, Brazil, analyzing its occurrence period and the patterns of utilization for the most abundant species. Using a beach seine monthly for one year, we sampled 13861 individuals, of 57 species and 24 families. The fish species used the study area for different proposes: Atherinella brasiliensis was sampled in all phases of gonadal development and considered as resident, juveniles of Trachinotus goodei used the beaches for growth and juveniles of Mugil curema and Mugil liza used the beaches as a route from the ocean to the estuary. Our results showed the importance of the sandy beaches for juvenile fish, especially in spring and summer when most juveniles occur and recruit. Unfortunately, this is the period of the most intense tourist activity. As many of the species studied are commercially important, this study highlighted the necessity of coastal habitat preservation for better fishery management.
DOI: 10.6084/m9.figshare.14325480.v1
title: Standardized catch rate of cockfish, Callorhinchus callorynchus, in a bottom trawl fishery of Patagonia: Is it possible its use as a predictor of abundance trend?

description: Abstract The catch per unit of effort (CPUE) data of cockfish, Callorhinchus callorynchus, during 1986-2011 was evaluated for the bottom trawl fishery of the San Matías gulf (Patagonia, Argentina). The objective of this work was to detect what are the factors related to fishery dynamic that affect catch rate of cockfish and to assess standardized CPUE by General linear models (GLMs) and General linear mixed models (GLMMs) as a relative abundance index. The annual trend of the catch rate indicated an increase during the evaluated period. The nominal CPUE and the indices standardized by the Delta-GLM and Delta-GLMM showed the same annual trend, with increases of 57%, 61.1% and 60.7%, respectively. The LogNormal models have the best-fit model and explained 23.5% of the total variability. The factors year, month, depth and hake CPUE explained the highest variability. The analysis of the models indicated that the catch rate of cockfish is subject to the lack of an homogeneous distribution of the fishing effort during different years, months and vessels. This was related to the fleet dynamic searching the targets species. The increasing trend of CPUE and landings would be indicating an increase in effort directionality to the cockfish in the last decade.
DOI: 10.6084/m9.figshare.14325480
title: Standardized catch rate of cockfish, Callorhinchus callorynchus, in a bottom trawl fishery of Patagonia: Is it possible its use as a predictor of abundance trend?

description: Abstract The catch per unit of effort (CPUE) data of cockfish, Callorhinchus callorynchus, during 1986-2011 was evaluated for the bottom trawl fishery of the San Matías gulf (Patagonia, Argentina). The objective of this work was to detect what are the factors related to fishery dynamic that affect catch rate of cockfish and to assess standardized CPUE by General linear models (GLMs) and General linear mixed models (GLMMs) as a relative abundance index. The annual trend of the catch rate indicated an increase during the evaluated period. The nominal CPUE and the indices standardized by the Delta-GLM and Delta-GLMM showed the same annual trend, with increases of 57%, 61.1% and 60.7%, respectively. The LogNormal models have the best-fit model and explained 23.5% of the total variability. The factors year, month, depth and hake CPUE explained the highest variability. The analysis of the models indicated that the catch rate of cockfish is subject to the lack of an homogeneous distribution of the fishing effort during different years, months and vessels. This was related to the fleet dynamic searching the targets species. The increasing trend of CPUE and landings would be indicating an increase in effort directionality to the cockfish in the last decade.
DOI: 10.6084/m9.figshare.14325481
title: Trophic relationships among fish assemblages in a mudflat within Brazilian marine protected area

description: Abstract The present study on the temporal variations in diet and the trophic guilds of dominant fish species in a tidal mudflat, during the dry and rainy seasons. We aimed at classifying the diet composition of 17 species in the Mamanguape river estuary, northeastern Brazil, identifying the dominant food components and evaluating the effects of seasonality on the guild organization. Diet varied little between species and seasons; during the rainy season, the diets seemed to be more heterogeneous. According to the importance of prey in the diets, 5 primary feeding guilds were identified: (1) Detritivore, (2) Zooplanktivore, (3) Zoobenthivore-epifaune, (4) Zoobenthivore-infaune, and (5) Piscivore. Most fishes fed on a diverse range of food items but relied heavily on the zooplankton preys. Several fish species showed a tendency for a specialised diet, with almost all species showing some degree of opportunistic feeding. A high degree of diet overlap was found among some species; however, the presence of exploitative competition could not be determined.
DOI: 10.6084/m9.figshare.14325481.v1
title: Trophic relationships among fish assemblages in a mudflat within Brazilian marine protected area

description: Abstract The present study on the temporal variations in diet and the trophic guilds of dominant fish species in a tidal mudflat, during the dry and rainy seasons. We aimed at classifying the diet composition of 17 species in the Mamanguape river estuary, northeastern Brazil, identifying the dominant food components and evaluating the effects of seasonality on the guild organization. Diet varied little between species and seasons; during the rainy season, the diets seemed to be more heterogeneous. According to the importance of prey in the diets, 5 primary feeding guilds were identified: (1) Detritivore, (2) Zooplanktivore, (3) Zoobenthivore-epifaune, (4) Zoobenthivore-infaune, and (5) Piscivore. Most fishes fed on a diverse range of food items but relied heavily on the zooplankton preys. Several fish species showed a tendency for a specialised diet, with almost all species showing some degree of opportunistic feeding. A high degree of diet overlap was found among some species; however, the presence of exploitative competition could not be determined.