cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9cftrm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eleocharis dunensis"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008208-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x9824
title: Occurrence Download

description: A dataset containing 3707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.47_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Sylvilagus floridanus",
 "Year 2015-2025"
 ]
}

 The dataset includes 3707 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008209-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6069/5ce5-br88
title: Urinary proPSA isoforms for noninvasive detection of prostate cancer

description: Prostate cancer (PCa) is the second leading cause of male cancer-related deaths in the United States. Biomarkers for effective early diagnosis and prognosis of prostate cancer are still lacking. The pre-mature forms of prostate specific antigen (PSA), proPSAs, have been shown to be associated with PCa in patient plasma or sera. Herein, we report the development of highly specific targeted mass spectrometry assays for simultaneous quantification of [-2, -4, -5, -7]proPSA isoforms in human urine. The diagnostic utility of these isoform markers was evaluated with a cohort of 30 well-established clinical urine samples. The two [-2, -4]proPSA isoforms, are highly promising in discriminating cancer from non-cancer patients with p values of 0.01 and 0.03, respectively. The other two [-5, -7]proPSA isoforms have p values of 0.07 and 0.04, respectively. Under the 95% confidence interval, the combination of [-2]proPSA and [-4]proPSA isoforms yields the area under curve (AUC) of 0.86 and the AUC value for the combined all 4 proPSA isoforms was calculated to be 0.85. Due to its highest abundance among all the proPSA isoforms in human urine as well as its being the most promising proPSA marker, we have further verified [-2]proPSA, the dominant isoform, in an independent cohort of 34 clinical urine samples with p<0.0019 for distinguishing PCa patients from healthy controls. Validation of these proPSA isoforms in large-scale cohorts as well as with increased SRM sensitivity is needed to demonstrate their potential clinical utility, including their prognostic values for predicting the aggressive forms of PCa.
DOI: 10.15468/dl.xncv89
title: Occurrence Download

description: A dataset containing 1224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea stoebe",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 1224 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008210-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6ywcr
title: Occurrence Download

description: A dataset containing 275754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "StateProvince is Cundinamarca",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 275754 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008180-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15388817
title: CytoBatchFlagR: Spectral flow cytometry dataset

description: Recent advancements in flow and mass cytometry techniques have led to the generation of high-parameter (>40 markers) single-cell datasets, often used to create large scale, longitudinal studies with possible technical variabilities occurring between experimental runs. Many state of the art computational methods to correct for these batch effects exist but do not provide an automated assessment of batch effects before correction. Here, we developed CytoBatchFlagR, an automated computation framework that highlights problematic batches and markers within a dataset, guiding researchers to objectively inspect their data before the exclusion of these batches/markers or applying a batch normalization algorithm.

Technical controls were obtained from healthy, non-pregnant adult peripheral blood donors at a local blood donation center. Peripheral leukocytes were isolated by Ficoll gradient centrifugation for 20 min at 800g). Leukocytes from each donor were washed once with wash medium (RPMI 10% FBS pen/strep) and centrifugated for 7min at 650g). Unstimulated controls tcu1 and tcu2 were directly aliquoted in X-VIVO supplemented with 10% FBS and 10% DMSO and frozen in liquid nitrogen. Stimulated controls tcs3 and tcs4  were cultured in X-VIVO medium supplemented with 5% human serum and 50 U/mL IL-2 in the presence ofanti-CD3/CD28 beads (BD Biosciences, 1ug/ml) for 7 days. Leukocytes were collected on day 7 post-stimulation, aliquotted and frozen in liquid nitrogen as described. Controls were thawed at 37°C,  washed once and directly stained for analysis on a Cytek Aurora spectral flow cytometer. For surface staining, cells were stained for 30 min in RPMI containing 1% FBS and pen/strep. For intracellular staining, cells were fixed and permeabilized using the eBiosciences FOXP3 kit (eBiosciences). Flow cytometry data was acquired in 18 batches using equipment maintained by the Research Flow Cytometry Core in the Division of Rheumatology at Cincinnati Children’s Hospital Medical Center. Initial data processing and gating on CD45+CD14- live single cells was performed using FlowJo software[version]. FCS files of CD45+CD14- live single cells were exported for further analysis in R software.

Details on antibody clones and concentrations as used for staining are included as Table 1. The meta datatable that includes all information including file name, sample ID, batch number as required for R-based analysis including CytoBatchFlagR are included in Table 2.
DOI: 10.5281/zenodo.15388816
title: CytoBatchFlagR: Spectral flow cytometry dataset

description: Recent advancements in flow and mass cytometry techniques have led to the generation of high-parameter (>40 markers) single-cell datasets, often used to create large scale, longitudinal studies with possible technical variabilities occurring between experimental runs. Many state of the art computational methods to correct for these batch effects exist but do not provide an automated assessment of batch effects before correction. Here, we developed CytoBatchFlagR, an automated computation framework that highlights problematic batches and markers within a dataset, guiding researchers to objectively inspect their data before the exclusion of these batches/markers or applying a batch normalization algorithm.

Technical controls were obtained from healthy, non-pregnant adult peripheral blood donors at a local blood donation center. Peripheral leukocytes were isolated by Ficoll gradient centrifugation for 20 min at 800g). Leukocytes from each donor were washed once with wash medium (RPMI 10% FBS pen/strep) and centrifugated for 7min at 650g). Unstimulated controls tcu1 and tcu2 were directly aliquoted in X-VIVO supplemented with 10% FBS and 10% DMSO and frozen in liquid nitrogen. Stimulated controls tcs3 and tcs4  were cultured in X-VIVO medium supplemented with 5% human serum and 50 U/mL IL-2 in the presence ofanti-CD3/CD28 beads (BD Biosciences, 1ug/ml) for 7 days. Leukocytes were collected on day 7 post-stimulation, aliquotted and frozen in liquid nitrogen as described. Controls were thawed at 37°C,  washed once and directly stained for analysis on a Cytek Aurora spectral flow cytometer. For surface staining, cells were stained for 30 min in RPMI containing 1% FBS and pen/strep. For intracellular staining, cells were fixed and permeabilized using the eBiosciences FOXP3 kit (eBiosciences). Flow cytometry data was acquired in 18 batches using equipment maintained by the Research Flow Cytometry Core in the Division of Rheumatology at Cincinnati Children’s Hospital Medical Center. Initial data processing and gating on CD45+CD14- live single cells was performed using FlowJo software[version]. FCS files of CD45+CD14- live single cells were exported for further analysis in R software.

Details on antibody clones and concentrations as used for staining are included as Table 1. The meta datatable that includes all information including file name, sample ID, batch number as required for R-based analysis including CytoBatchFlagR are included in Table 2.
DOI: 10.15468/dl.d4etm3
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratopteris thalictroides",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008211-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbxu38
title: Occurrence Download

description: A dataset containing 1374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Urocyon cinereoargenteus",
 "Year 1965-2015"
 ]
}

 The dataset includes 1374 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008212-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/gggn-y793
title: "ReSCIND Testing and Evaluation CTF 1 Cyber Dataset"

description: "As a part of IARPA ReSCIND, LLNL hosted multiple 4-day cyber experiments with external participants each attempting to complete four challenges. Three of the four challenges were intended to elicit CogVulns (Cognitive Vulnerabilities) in participants and the fourth was intended to serve as a baseline. Each challenge had a specific cybersecurity-related goal presented to the participant in the form of a cover story. Participants were free to attempt the challenges in any order and for any percentage of their total time. Participants entered the challenge environment remotely, through Apache Guacamole, and were free to connect and disconnect at their will."
DOI: 10.7284/157938
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL2315 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157956
title: Expendable Probe data collected during research cruise MGL2315 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157935
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL2315 using a CCTech C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157948
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL2315 using a CCTech C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157936
title: Gravimeter data collected during research cruise MGL2315 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157934
title: Gyrocompass data collected during research cruise MGL2315 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157937
title: INS (Inertial Navigation System) data collected during research cruise MGL2315 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157953
title: INS (Inertial Navigation System) data collected during research cruise MGL2315 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157931
title: Magnetometer data collected during research cruise MGL2315 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157952
title: Meteorological Station data collected during research cruise MGL2315 using a Vaisala WXT520 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157954
title: Multibeam Echosounder data collected during research cruise MGL2315 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157955
title: Multibeam Echosounder data collected during research cruise MGL2315 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5066/p945dyiz
title: Potential Sea Turtle Nesting Areas for Cat and Ship Island, Mississippi for various years from 1998 to 2020 (ver. 4.0, November 2025)

description: The Mississippi Coastal Improvement Program (MsCIP) Monitoring and Adaptive Management Program (MAMP) notes that five sea turtle species are found in the northern Gulf of America (Gulf of Mexico), including loggerhead, green, Kemp’s ridley, leatherback, and hawksbill. Green, loggerhead, and Kemp’s ridley sea turtles are regularly documented in the waters surrounding the barrier islands of Gulf Islands National Seashore. Of these, only loggerhead sea turtles have been confirmed as nesting on the islands in the Mississippi Sound and they are the only species with designated critical habitat within the island chain (Horn and Petit Bois Islands). Green sea turtle nests have been found on the Mississippi islands; however, these nests are likely uncommon. Though never documented, Kemp’s ridley sea turtles could nest on the islands. Leatherback and hawksbill sea turtles may be seen in the barrier island waters, but there are no confirmed nest records within the barrier island project area. A subtask of the MsCIP MAMP is to identify potential sea turtle nesting habitat on Cat and Ship Islands. This objective was achieved using digital elevation models (DEMs) developed using light detection and ranging (lidar) data and dune toes from lidar-derived beach morphology (Doran and others, 2020). Island tips will be added to the nesting area by using a combination of photointerpretation and habitat data to determine the mean high water line based on water regime. References: Doran, K.S., Long, J.W., Birchler, J.J., Brenner, O.T., Hardy, M.W., Morgan, K.L.M, Stockdon, H.F., and Torres, M.L., 2017, Lidar-derived beach morphology (dune crest, dune toe, and shoreline) for U.S. sandy coastlines (ver. 4.0, October 2020): U.S. Geological Survey data release, https://doi.org/10.5066/F7GF0S0Z.

First release: 2023
Revised: December 2024 (ver. 2.0)
Revised: March 2025 (ver. 3.0)
Revised: November 2025 (ver. 4.0)
DOI: 10.7284/157932
title: Singlebeam Echosounder data collected during research cruise MGL2315 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157933
title: Singlebeam Echosounder data collected during research cruise MGL2315 using a Furuno FE-700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157949
title: Speedlog data collected during research cruise MGL2315 using a Furuno DS-80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157951
title: SSV (Sound Speed Velocimeter) data collected during research cruise MGL2315 using a AML MicroSV instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/157950
title: TSG (Thermosalinograph) data collected during research cruise MGL2315 using a SeaBird SBE-45 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15472/oshe6o
title: Colección Taxonómica Central del Museo Entomológico UNAB, familia Blissidae

description: El Museo Entomológico UNAB contiene cerca de 180.000 especímenes con las siguientes características de conservación: 153.000 montados en alfiler y almacenados en 980 gavetas de madera tipo Cornell, ubicadas en seis paneles de compactadores y 395 cajas misceláneas en estanterías; 10.430 montadas en láminas: Coccomorpha (6.600 láminas), Collembola (1.700), Aphidomorpha (1400), Aleyrodomorpha (500), Thysanoptera (90), Acari (90), Psyllomorpha (50); 18.400 entre larvas y adultos, envasados en 4.600 frascos con alcohol, y 96 especímenes tipo montados en alfiler, que representan 46 especies.Aproximadamente, 20.000 especímenes se encuentran catalogados en la base digital de la Colección Taxonómica Central (CTC) del Museo UNAB, 17.000 de los cuales se encuentran identificados por especialistas, a nivel de género o especie. Dichas identificaciones representan un total de 4.000 especies dentro de 19 órdenes de insectos; así como siete especies de Acari en dos familias.En los recursos del apartado de Hemiptera de la colección UNAB se documentan registros biológicos de las siguientes familias dentro del orden Hemiptera: Aetalionidae, Alydidae, Anthocoridae, Aradidae, Berytidae, Blissidae, Cercopidae, Cicadellidae, Cicadidae, Cixiidae, Clastopteridae, Coreidae, Cydnidae, Derbidae, Fulgoridae, Issidae, Largidae, Lygaeidae, Membracidae, Miridae, Pachygronthidae, Pentatomidae, Pyrrhocoridae, Reduviidae, Rhopalidae, Rhyparochromidae, Scutelleridae.Los especímenes en general de las colecciones del Museo tienen fecha de recolección desde 1950 hasta la actualidad y son parte de permisos de recolección asociados a proyectos dirigidos en los agroecosistemas de Colombia. Todos los especímenes asociados a los registros se encuentran actualmente depositados en el museo entomológico UNAB, de la Facultad de Ciencias Agrarias de la Universidad Nacional de Colombia, sede Bogotá.
DOI: 10.15468/dl.j6gthj
title: Occurrence Download

description: A dataset containing 24957131 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 24957131 records were derived from 70318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008162-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvfdym
title: Occurrence Download

description: A dataset containing 3449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is USA.47_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes",
 "Year 2015-2025"
 ]
}

 The dataset includes 3449 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008213-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ku2ugt
title: Occurrence Download

description: A dataset containing 1462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chenopodium album",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)"
 ]
}

 The dataset includes 1462 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008214-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cu87pn
title: Occurrence Download

description: A dataset containing 1929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.06601 7.04996,-75.13525 7.01258,-75.17385 6.9654,-75.19591 6.88145,-75.20572 6.83672,-75.21 6.80976,-75.1763 6.8116,-75.14628 6.86429,-75.11932 6.92925,-75.07765 6.94089,-75.06233 6.98072,-75.04763 7.023,-75.04518 7.04812,-75.06601 7.04996))",
 "OccurrenceStatus is Present",
 "TaxonKey is Pipridae"
 ]
}

 The dataset includes 1929 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008215-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.