cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3867817_d2
title: Additional file 2: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: Relative quantification of the metabolites produced by C. cicadae at different developmental stages. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3867817_d2.v1
title: Additional file 2: of Omics data reveal the unusual asexual-fruiting nature and secondary metabolic potentials of the medicinal fungus Cordyceps cicadae

description: Relative quantification of the metabolites produced by C. cicadae at different developmental stages. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3867769_d9.v1
title: MOESM9 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 9. Motifs and predicted TF binding of 5â ˛ mCHH regulatory regions.
DOI: 10.6084/m9.figshare.c.3867769_d9
title: MOESM9 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 9. Motifs and predicted TF binding of 5â ˛ mCHH regulatory regions.
DOI: 10.6084/m9.figshare.c.3867769_d8.v1
title: MOESM8 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 8. List of overlapping DMGs and DEGs.
DOI: 10.6084/m9.figshare.c.3867769_d7.v1
title: MOESM7 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 7. RNA-seq information.
DOI: 10.6084/m9.figshare.c.3867769_d8
title: MOESM8 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 8. List of overlapping DMGs and DEGs.
DOI: 10.6084/m9.figshare.c.3867769_d7
title: MOESM7 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 7. RNA-seq information.
DOI: 10.6084/m9.figshare.c.3867769_d6.v1
title: MOESM6 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 6. DMR information.
DOI: 10.6084/m9.figshare.c.3867769_d6
title: MOESM6 of Optimized reduced representation bisulfite sequencing reveals tissue-specific mCHH islands in maize

description: Additional file 6. DMR information.
DOI: 10.6084/m9.figshare.c.3866416_d3
title: Additional file 3: Table S2. of Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

description: Gene Ontology (GO) enrichment analysis of differentially expressed genes: (A)Â R-As13d vs S-As13d; (B) R-As19d vs S-As19d. (XLS 249 kb)
DOI: 10.6084/m9.figshare.c.3866416_d3.v1
title: Additional file 3: Table S2. of Differential gene expression in Anopheles stephensi following infection with drug-resistant Plasmodium yoelii

description: Gene Ontology (GO) enrichment analysis of differentially expressed genes: (A)Â R-As13d vs S-As13d; (B) R-As19d vs S-As19d. (XLS 249 kb)
DOI: 10.6084/m9.figshare.c.3866422_d1.v1
title: Additional file 1: Table S1. of The core regulatory network of the abscisic acid pathway in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress

description: Characteristics of banana PYL, PP2C, and SnRK2 gene families. Table S2. Properties of transcriptome for RNA-seq analysis in different tissues. Table S3. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in different tissues. Table S4. Expression data of the banana PYL-PP2C-SnRK2 genes in different tissues of BX and FJ varieties. Table S5. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in different tissues of BX and FJ varieties. Table S6. Properties of transcriptome for RNA-seq analysis in different stages of fruit development and ripening. Table S7. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in different stages of fruit development and ripening. Table S8. Expression data of the banana PYL-PP2C-SnRK2 genes in different stages of fruit development and ripening in BX and FJ varieties. Table S9. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in different stages of fruit development and ripenings of BX and FJ varieties. Table S10. Properties of transcriptome for RNA-seq analysis under cold, salt, and osmotic treatments. Table S11. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in response to cold, salt, and osmotic stresses. Table S12. Expression data (log2-based value) of the banana PYL-PP2C-SnRK2 genes after various abiotic stress treatment in BX and FJ. Table S13. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in response to abiotic stress. Table S14. Expression data of the genes involved in Group A PP2C-mediate interaction networks under abiotic stress in BX and FJ varieties. Table S15. The accession numbers and gene name of PYL-PP2C-SnRK2 gene families in Arabidopsis and rice. (XLS 216Â kb)
DOI: 10.6084/m9.figshare.c.3866422_d1
title: Additional file 1: Table S1. of The core regulatory network of the abscisic acid pathway in banana: genome-wide identification and expression analyses during development, ripening, and abiotic stress

description: Characteristics of banana PYL, PP2C, and SnRK2 gene families. Table S2. Properties of transcriptome for RNA-seq analysis in different tissues. Table S3. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in different tissues. Table S4. Expression data of the banana PYL-PP2C-SnRK2 genes in different tissues of BX and FJ varieties. Table S5. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in different tissues of BX and FJ varieties. Table S6. Properties of transcriptome for RNA-seq analysis in different stages of fruit development and ripening. Table S7. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in different stages of fruit development and ripening. Table S8. Expression data of the banana PYL-PP2C-SnRK2 genes in different stages of fruit development and ripening in BX and FJ varieties. Table S9. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in different stages of fruit development and ripenings of BX and FJ varieties. Table S10. Properties of transcriptome for RNA-seq analysis under cold, salt, and osmotic treatments. Table S11. FPKM value from each biological replicates of PYL-PP2C-SnRK2 genes in response to cold, salt, and osmotic stresses. Table S12. Expression data (log2-based value) of the banana PYL-PP2C-SnRK2 genes after various abiotic stress treatment in BX and FJ. Table S13. Statistical analyses of the expression data related to banana PYL-PP2C-SnRK2 genes in response to abiotic stress. Table S14. Expression data of the genes involved in Group A PP2C-mediate interaction networks under abiotic stress in BX and FJ varieties. Table S15. The accession numbers and gene name of PYL-PP2C-SnRK2 gene families in Arabidopsis and rice. (XLS 216Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d11.v1
title: Additional file 9: Table S6. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Pairwise kinship estimates of the 120 lines. (XLSX 162Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d11
title: Additional file 9: Table S6. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Pairwise kinship estimates of the 120 lines. (XLSX 162Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d10.v1
title: Additional file 8: Table S5. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Population structure (Q matrix) of the 120 lines. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d10
title: Additional file 8: Table S5. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Population structure (Q matrix) of the 120 lines. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d6.v1
title: Additional file 4: Table S4. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: LD between pairs of SNPs. SNPs are indicated by physical position, and the corresponding SNP name is indicated in Additional file 3: Table S3. (XLSX 8341Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d2
title: Additional file 11: Table S8. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Comparison of VW resistance-associated SNPs with the genome region of interestand detection of functional genes related to VW resistance. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d1
title: Additional file 10: Table S7. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Statistically significant SNPs associated with VW resistance in the disease nursery environment and in thegreenhouse environment. SNPs detected in both environments were highlighted with yellow. The peak SNPs were highlighted with red. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3864187_d1.v1
title: Additional file 10: Table S7. of Regional association analysis-based fine mapping of three clustered QTL for verticillium wilt resistance in cotton (G. hirsutum. L)

description: Statistically significant SNPs associated with VW resistance in the disease nursery environment and in thegreenhouse environment. SNPs detected in both environments were highlighted with yellow. The peak SNPs were highlighted with red. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3864142_d1.v1
title: Additional file 1: Table S1. of Comparison of 12-month therapeutic effect of conbercept and ranibizumab for diabetic macular edema: a real-life clinical practice study

description: Main outcome measures of 12Â month follow-up. Excel table including the raw data of the changes in best-corrected visual acuity letter score and central retinal thickness, as well as the number of intravitreal injections delivered. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3864142_d1
title: Additional file 1: Table S1. of Comparison of 12-month therapeutic effect of conbercept and ranibizumab for diabetic macular edema: a real-life clinical practice study

description: Main outcome measures of 12Â month follow-up. Excel table including the raw data of the changes in best-corrected visual acuity letter score and central retinal thickness, as well as the number of intravitreal injections delivered. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3863149_d12.v1
title: Additional file 9: Table S8. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Genome-wide association signals of additional minor-effect loci. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d11
title: Additional file 8: Table S7. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Genome-wide association signals of 57 agronomic traits. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d12
title: Additional file 9: Table S8. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Genome-wide association signals of additional minor-effect loci. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d11.v1
title: Additional file 8: Table S7. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Genome-wide association signals of 57 agronomic traits. (XLSX 30Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d10.v1
title: Additional file 7: Table S6. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Permuted significant thresholds of representative traits. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d10
title: Additional file 7: Table S6. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Permuted significant thresholds of representative traits. (XLSX 10Â kb)
DOI: 10.5281/zenodo.14498245
title: A Self-Adaptive Approach for Test Suite Generation for Smart Contracts based on LLMs and Mutation Prioritization
DOI: 10.5281/zenodo.14498244
title: A Self-Adaptive Approach for Test Suite Generation for Smart Contracts based on LLMs and Mutation Prioritization
DOI: 10.5281/zenodo.14498253
title: A Self-Adaptive Approach for Test Suite Generation for Smart Contracts based on LLMs and Mutation Prioritization
DOI: 10.6084/m9.figshare.c.3863149_d4.v1
title: Additional file 1: Table S1. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Summary of the 809 soybean accessions. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d4
title: Additional file 1: Table S1. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Summary of the 809 soybean accessions. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d3.v1
title: Additional file 12: Table S11. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Link loci across 51 traits. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d3
title: Additional file 12: Table S11. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Link loci across 51 traits. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d2.v1
title: Additional file 11: Table S10. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Candidate causal genes in the lipid biosynthesis pathway. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d2
title: Additional file 11: Table S10. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Candidate causal genes in the lipid biosynthesis pathway. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d1.v1
title: Additional file 10: Table S9. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Candidate causal genes in the fatty acid biosynthesis pathway. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3863149_d1
title: Additional file 10: Table S9. of Genome-wide association studies dissect the genetic networks underlying agronomical traits in soybean

description: Candidate causal genes in the fatty acid biosynthesis pathway. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3863086_d1.v1
title: MOESM1 of An efficient unified model for genome-wide association studies and genomic selection

description: Additional file 1. R code of StepLMM. The data contains the R function of StepLMM, an example data and usersâ   guide.
DOI: 10.6084/m9.figshare.c.3861730_d1
title: Additional file 1: Table S1. of Development of nomograms to predict axillary lymph node status in breast cancer patients

description: Model performance of the full models and the variants. This table showed the performance of the full models and their variants. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3861730_d1.v1
title: Additional file 1: Table S1. of Development of nomograms to predict axillary lymph node status in breast cancer patients

description: Model performance of the full models and the variants. This table showed the performance of the full models and their variants. (XLSX 42Â kb)
DOI: 10.6084/m9.figshare.c.3861694_d3
title: Additional file 3: of Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

description: Details of eight clinical relevant CNVs. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3861694_d2
title: Additional file 2: of Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

description: Details of all 17ďťż1 variants detected by CMA. (XLS 90Â kb)
DOI: 10.6084/m9.figshare.c.3861694_d2.v1
title: Additional file 2: of Evaluation of three read-depth based CNV detection tools using whole-exome sequencing data

description: Details of all 17ďťż1 variants detected by CMA. (XLS 90Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d11.v1
title: Additional file 9: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Divergence time estimation for the two Gymnosporangium species. This file provides the AIC, AICc and BIC values calculated by 23 computational models as well as the evolutionary tree constructed with the minimum model. (ZIP 2Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d11
title: Additional file 9: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Divergence time estimation for the two Gymnosporangium species. This file provides the AIC, AICc and BIC values calculated by 23 computational models as well as the evolutionary tree constructed with the minimum model. (ZIP 2Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d10.v1
title: Additional file 8: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Ka/Ks analysis. This file provides the conserved and divergent orthologous genes based on the calculation of Ka/Ks values for each orthologous gene. (ZIP 33Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d10
title: Additional file 8: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Ka/Ks analysis. This file provides the conserved and divergent orthologous genes based on the calculation of Ka/Ks values for each orthologous gene. (ZIP 33Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d9.v1
title: Additional file 7: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Analysis of orthologous genes. This file provides the orthologous genes identified by OrthoMCL as well as selected one-to-one orthologous genes. (ZIP 312Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d9
title: Additional file 7: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Analysis of orthologous genes. This file provides the orthologous genes identified by OrthoMCL as well as selected one-to-one orthologous genes. (ZIP 312Â kb)
DOI: 10.15468/dl.as5j4h
title: Occurrence Download

description: A dataset containing 13081 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "PublishingOrg is one of (488f6b87-5688-4c9a-928c-2d5355054b01)"
 ]
}

 The dataset includes 13081 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035408-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3860629_d8
title: Additional file 6: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Candidate effectors. This file provides the small secreted proteins and candidate effectors predicted in G. yamadae and G. asiaticum. (ZIP 184Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d8.v1
title: Additional file 6: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Candidate effectors. This file provides the small secreted proteins and candidate effectors predicted in G. yamadae and G. asiaticum. (ZIP 184Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d7.v1
title: Additional file 5: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Unigene functional annotation of G. yamadae and G. asiaticum. This file provides the unigene annotations based on seven databases: Nr, Nt, Pfam, KOG/COG, SwissProt, GO and KEGG. (ZIP 77245Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d6.v1
title: Additional file 4: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: CDS prediction analysis. This file provides the predicted CDSs and amino acid sequences based on annotation in a protein database or using ESTScan software. (ZIP 47387Â kb)
DOI: 10.6084/m9.figshare.c.3860629_d7
title: Additional file 5: of Comparative transcriptome analysis and identification of candidate effectors in two related rust species (Gymnosporangium yamadae and Gymnosporangium asiaticum)

description: Unigene functional annotation of G. yamadae and G. asiaticum. This file provides the unigene annotations based on seven databases: Nr, Nt, Pfam, KOG/COG, SwissProt, GO and KEGG. (ZIP 77245Â kb)
DOI: 10.6084/m9.figshare.c.3860575_d4.v1
title: Additional file 4: Table S3. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: Statistics of Hi-C reads. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3860575_d5.v1
title: Additional file 5: Table S4. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: Genes enriched for H3K27me3 marks. (XLSX 3496 kb)
DOI: 10.6084/m9.figshare.c.3860575_d3.v1
title: Additional file 3: Table S2. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: GO analysis of differentially expressed genes. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3860575_d3
title: Additional file 3: Table S2. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: GO analysis of differentially expressed genes. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3860575_d4
title: Additional file 4: Table S3. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: Statistics of Hi-C reads. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3860575_d2.v1
title: Additional file 2: Table S1. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: RNA-seq analysis, including reads counting, statistical analysis, on gene expression changes. (XLSX 11493 kb)
DOI: 10.6084/m9.figshare.c.3860575_d2
title: Additional file 2: Table S1. of Altered chromatin compaction and histone methylation drive non-additive gene expression in an interspecific Arabidopsis hybrid

description: RNA-seq analysis, including reads counting, statistical analysis, on gene expression changes. (XLSX 11493 kb)
DOI: 10.6084/m9.figshare.c.3860482_d3
title: Additional file 3: Table S3. of A homozygous missense variant in HSD17B4 identified in a consanguineous Chinese Han family with type II Perrault syndrome

description: Primer information of HARS2, CLPP and LARS2 for Sanger sequencing. (XLS 27Â kb)