cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14050220
title: Dataset for the article "Soil bacterial neutral lipid fatty acids: Markers for carbon storage or necromass?"

description: The following are data and code used for statistical analysis and figure plotting in the manuscript

Soil bacterial neutral lipid fatty acids: Markers for carbon storage or necromass?, Soil Biology and Biochemistry, 2025, https://doi.org/10.1016/j.soilbio.2025.109855

It contains the following files:



Soil PLFA and NLFA data (Fig_2_3.zip)



Total ion chromatogram (TIC) area data (soil_area.csv)

Extraction weights and weights of lower phase for transfer correction (soil_weights.csv)

Data for correcting added methyl group during derivatisation, and soil fatty acid specificities (soil_phylum.csv)

An R script producing the calculations and plotting for Fig. 2, Fig. 3, and Table 2 (Fig_2_3.R)






JGI IMG/M ER gene search data (Fig_5.zip)



All soil bacterial isolates in the JGI IMG/MER database (Bacteria_soil_all.txt)

Soil bacterial isolates which show WS/DGAT, DAGAT, and phaR (Bacteria_soil_pfam06974_WSDGAT.txt, Bacteria_soil_pfam03982_DAGAT.txt, Bacteria_soil_pfam07879_phaR.txt)

NCBI data with unique species IDs and names (NCBI_species_names.csv)

An R script producing the calculations and cladogram for Fig. 5 and Table 4 (Fig_5.R)






13C-labelled glucose addition experiment data (Fig_6.zip)



Absolute abundance data in nmol C g-1 dry weight of the PLFA and NLFA data from soil extracts (nmolC.csv)

Relative 13C enrichment of PLFAs and NLFAs in at%13C (atp.csv)

Taxonomic group assignments of fatty acids (phylum.csv)

An R script producing the calculations and plotting for Fig. 6 (Fig_6.R)
DOI: 10.5281/zenodo.14050221
title: Dataset for the article "Soil bacterial neutral lipid fatty acids: Markers for carbon storage or necromass?"

description: The following are data and code used for statistical analysis and figure plotting in the manuscript

Soil bacterial neutral lipid fatty acids: Markers for carbon storage or necromass?, Soil Biology and Biochemistry, 2025, https://doi.org/10.1016/j.soilbio.2025.109855

It contains the following files:



Soil PLFA and NLFA data (Fig_2_3.zip)



Total ion chromatogram (TIC) area data (soil_area.csv)

Extraction weights and weights of lower phase for transfer correction (soil_weights.csv)

Data for correcting added methyl group during derivatisation, and soil fatty acid specificities (soil_phylum.csv)

An R script producing the calculations and plotting for Fig. 2, Fig. 3, and Table 2 (Fig_2_3.R)






JGI IMG/M ER gene search data (Fig_5.zip)



All soil bacterial isolates in the JGI IMG/MER database (Bacteria_soil_all.txt)

Soil bacterial isolates which show WS/DGAT, DAGAT, and phaR (Bacteria_soil_pfam06974_WSDGAT.txt, Bacteria_soil_pfam03982_DAGAT.txt, Bacteria_soil_pfam07879_phaR.txt)

NCBI data with unique species IDs and names (NCBI_species_names.csv)

An R script producing the calculations and cladogram for Fig. 5 and Table 4 (Fig_5.R)






13C-labelled glucose addition experiment data (Fig_6.zip)



Absolute abundance data in nmol C g-1 dry weight of the PLFA and NLFA data from soil extracts (nmolC.csv)

Relative 13C enrichment of PLFAs and NLFAs in at%13C (atp.csv)

Taxonomic group assignments of fatty acids (phylum.csv)

An R script producing the calculations and plotting for Fig. 6 (Fig_6.R)
DOI: 10.5281/zenodo.15487629
title: TIE-GCM simulations

description: The TIE-GCM simulation output for April 29–May 25, 2015 includes neutral densities, temperature, neutral winds, O/N₂ ratio, and peak electron density (NmF2). These data support the publication "The Impact of Geomagnetic Activity on the Height-Dependent Ionospheric Delay in Relation to Solar Activity".
DOI: 10.5281/zenodo.15487630
title: TIE-GCM simulations

description: The TIE-GCM simulation output for April 29–May 25, 2015 includes neutral densities, temperature, neutral winds, O/N₂ ratio, and peak electron density (NmF2). These data support the publication "The Impact of Geomagnetic Activity on the Height-Dependent Ionospheric Delay in Relation to Solar Activity".
DOI: 10.15468/dl.7jx3yk
title: Occurrence Download

description: A dataset containing 39899 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 39899 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013682-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8nrntb
title: Occurrence Download

description: A dataset containing 656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Saposhnikovia divaricata (Turcz.) Schischk."
 ]
}

 The dataset includes 656 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013684-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bk2xsg
title: Occurrence Download

description: A dataset containing 111111 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is MARINe/PISCO: Intertidal: MARINe Coastal Biodiversity Surveys: Point Contact Surveys Summarized"
 ]
}

 The dataset includes 111111 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008207-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.83kcfy
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Heloderma horridum",
 "Year 1970-2025"
 ]
}

 The dataset includes 548 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008217-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc140gqb
title: CCDC 1043141: Experimental Crystal Structure Determination

description: Related Article: Jyoti Chandra|2023|Indian J.Chem.|62|454|doi:10.56042/ijc.v62i5.1428
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hvzc
title: CCDC 1862293: Experimental Crystal Structure Determination

description: Related Article: Kaushik Misra, Ahindra Nag, Sharmi Ganguly, Himadri Sekhar Maity, Avinash Sonawane|2025|Chem. Sel.|10|e202404930|doi:10.1002/slct.202404930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20hy2k
title: CCDC 1862358: Experimental Crystal Structure Determination

description: Related Article: Kaushik Misra, Ahindra Nag, Sharmi Ganguly, Himadri Sekhar Maity, Avinash Sonawane|2025|Chem. Sel.|10|e202404930|doi:10.1002/slct.202404930
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc23cqgp
title: CCDC 1947682: Experimental Crystal Structure Determination

description: Related Article: Dawei Wang, Ning Zhao, Tao Wang, Changfu Zhuang, Ying Wang, Bin Yang|2020|Crystals|10|98|doi:10.3390/cryst10020098
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25pcgq
title: CCDC 2016533: Experimental Crystal Structure Determination

description: Related Article: Yong-Ze Chen, Xiang-Huan Shan, Bo Yang, Lin Tie, Yu Liu, Jia-Le Fu, Jian-Ping Qu, Yan-Biao Kang|2025|Nat. Synth.|4|1288|doi:10.1038/s44160-025-00833-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25pchr
title: CCDC 2016534: Experimental Crystal Structure Determination

description: Related Article: Yong-Ze Chen, Xiang-Huan Shan, Bo Yang, Lin Tie, Yu Liu, Jia-Le Fu, Jian-Ping Qu, Yan-Biao Kang|2025|Nat. Synth.|4|1288|doi:10.1038/s44160-025-00833-4
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2hx20j
title: CCDC 2320877: Experimental Crystal Structure Determination

description: Related Article: Haoran Li, Fangting Huang, Claire Miesch, Robert J. Mayer, Yuwei Liu, Jianlian Huang, Lei Ma, Zhongyi Zeng, Zhi Zhou, David Lebœuf, Wei Yi, Shengdong Wang|2025|JACS Au|||doi:10.1021/jacsau.5c00958
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j1gkm
title: CCDC 2325110: Experimental Crystal Structure Determination

description: Related Article: Gen Li,  Shichao Hong,  Xuechen Li,  Wenhao Zhao,  Chaobo Ye,  Yi Yu,  Huajie Jiang,  Jie Yu,  Xue Zhang,  Shengming Ma,  Qiankun Li|2025|Nat.Commun.|61|6916|doi:10.1038/s41467-025-62204-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jjrvp
title: CCDC 2339813: Experimental Crystal Structure Determination

description: Related Article: Merve Nurhan Guney, Ceyhun Kucuk, Senay Yurdakul, Namık Özdemir, Ebru Coteli|2026|J.Mol.Struct.|1352||doi:10.1016/j.molstruc.2025.144550
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kbdkw
title: CCDC 2363488: Experimental Crystal Structure Determination

description: Related Article: Peidong Yang, Cheng Zhu, Heqing Zhu|2025|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l7jgv
title: CCDC 2390517: Experimental Crystal Structure Determination

description: Related Article: Shenfang Li, Weikun Zhang, Xin Zhou, Liang Yu, Huazhang Zhao, Manglai Gao, Jing Li, Hao Wang|2025|ACS Materials Lett.|7|2390|doi:10.1021/acsmaterialslett.5c00610
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lmcxj
title: CCDC 2401908: Experimental Crystal Structure Determination

description: Related Article: Xuyang Liang, Qingyun Wang, Pengcheng Zheng, Yonggui Robin Chi|2025|ACS Catalysis|15|18750|doi:10.1021/acscatal.5c06307
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lssqx
title: CCDC 2407110: Experimental Crystal Structure Determination

description: Related Article: Jisheng Xiao, Yushun Dou, Xiaopin Duan|2024|U.S.Patents|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lq6tc
title: CCDC 2404633: Experimental Crystal Structure Determination

description: Related Article: Alexios I. Vicatos, Leigh Loots, Gundo Mathada, Joanna Drwęska, Agnieszka M. Janiak, Leonard J. Barbour|2025|Nat.Mater|||doi:10.1038/s41563-025-02393-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltygv
title: CCDC 2408218: Experimental Crystal Structure Determination

description: Related Article: Wanjiang Zhu,  Fang-Yu Fu,  Ke-Yun Xu,  Wen-Hua Zheng|2025|Nat.Commun.|16|9332|doi:10.1038/s41467-025-64327-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1kr7dy
title: CCDC 1452300: Experimental Crystal Structure Determination

description: Related Article: R. Gao, Z. Li, Y. Yang, S. Jin, D.Wang|2025|J.Struct.Chem.|66|1440|doi:10.1134/S002247662507011X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lz5g7
title: CCDC 2412279: Experimental Crystal Structure Determination

description: Related Article: Zhengyu Han, Luyao Wei, Cuicui Nian, Xinzhe Hu, Shuxuan Liu, Jianwei Sun, Hai Huang|2025|Sci.China.Chem.|||doi:10.1007/s11426-025-2834-6
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1nv3d0
title: CCDC 1544432: Experimental Crystal Structure Determination

description: Related Article: R. Gao, Z. Li, Y. Yang, S. Jin, D.Wang|2025|J.Struct.Chem.|66|1440|doi:10.1134/S002247662507011X
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m1wdz
title: CCDC 2414881: Experimental Crystal Structure Determination

description: Related Article: Yu-Chen Sun, Zi-Lu Wang, Yun-He Xu|2025|ACS Catalysis|15|18817|doi:10.1021/acscatal.5c06250
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m1wf0
title: CCDC 2414882: Experimental Crystal Structure Determination

description: Related Article: Yu-Chen Sun, Zi-Lu Wang, Yun-He Xu|2025|ACS Catalysis|15|18817|doi:10.1021/acscatal.5c06250
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m56tv
title: CCDC 2418087: Experimental Crystal Structure Determination

description: Related Article: Tong Niu, Xin-Yu Zhan, Yu-Qing Bai, Bo Wu, Yong-Gui Zhou|2025|ACS Catalysis|15|18563|doi:10.1021/acscatal.5c05947
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mczqq
title: CCDC 2424594: Experimental Crystal Structure Determination

description: Related Article: Tobias Randt,  Morten Lehmann,  Elisabeth Irran,  Martin Kaupp,  Hendrik F. T. Klare,  Martin Oestreich|2025|Nature Chemistry|17|1666|doi:10.1038/s41557-025-01880-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mczxx
title: CCDC 2424600: Experimental Crystal Structure Determination

description: Related Article: Tobias Randt,  Morten Lehmann,  Elisabeth Irran,  Martin Kaupp,  Hendrik F. T. Klare,  Martin Oestreich|2025|Nature Chemistry|17|1666|doi:10.1038/s41557-025-01880-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mdf3l
title: CCDC 2425009: Experimental Crystal Structure Determination

description: Related Article: D.S. Shtarev, M.I. Balanov, A.V. Shtareva, R. Kevorkyants|2026|Mater.Chem.Phys.|349||doi:10.1016/j.matchemphys.2025.131762
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjqlh
title: CCDC 2429147: Experimental Crystal Structure Determination

description: Related Article: Cynthia Sinai Novoa-Ramírez, Rosa Isela López-Palma, Karen De la Mora-Zarco, Minerva E. Maya-Yescas, Luisa Rascón-Valenzuela, Adrián Espinoza-Guillén, José Sotero Delgado-Domínguez, Virginia Gómez-Vidales, Marcos Flores-Alamo, Ramón Enrique Robles-Zepeda, Ingeborg Becker, Lena Ruiz-Azuara|2026|J.Inorg.Biochem.|275|113113|doi:10.1016/j.jinorgbio.2025.113113
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjqmj
title: CCDC 2429148: Experimental Crystal Structure Determination

description: Related Article: Cynthia Sinai Novoa-Ramírez, Rosa Isela López-Palma, Karen De la Mora-Zarco, Minerva E. Maya-Yescas, Luisa Rascón-Valenzuela, Adrián Espinoza-Guillén, José Sotero Delgado-Domínguez, Virginia Gómez-Vidales, Marcos Flores-Alamo, Ramón Enrique Robles-Zepeda, Ingeborg Becker, Lena Ruiz-Azuara|2026|J.Inorg.Biochem.|275|113113|doi:10.1016/j.jinorgbio.2025.113113
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjqnk
title: CCDC 2429149: Experimental Crystal Structure Determination

description: Related Article: Cynthia Sinai Novoa-Ramírez, Rosa Isela López-Palma, Karen De la Mora-Zarco, Minerva E. Maya-Yescas, Luisa Rascón-Valenzuela, Adrián Espinoza-Guillén, José Sotero Delgado-Domínguez, Virginia Gómez-Vidales, Marcos Flores-Alamo, Ramón Enrique Robles-Zepeda, Ingeborg Becker, Lena Ruiz-Azuara|2026|J.Inorg.Biochem.|275|113113|doi:10.1016/j.jinorgbio.2025.113113
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.