cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.97q0n06.1/6.1
title: DNA barcoding data

description: Seed-deposition samples (bird droppings with seeds, defecated or regurgitated) analysed through DNA barcoding to identify the bird species responsible of seed dispersal events. Disperser identifications are classified as Sardinian warbler (Sylvia melanocephala) versus other bird species. Only those samples that were dispersed by Sardinian warblers (i.e. the ones used in this study) include fields for sequence, sequence length and source of barcoding identification.
DOI: 10.5061/dryad.d4v1n71/1
title: R code for analysis
DOI: 10.5061/dryad.d4v1n71/2
title: all_windows

description: This dataset includes calculated dB FS RMS values for each 100ms window/bin of the full 6s recording. An explanation of how these data were generated is also included in the publication's methods.
DOI: 10.5061/dryad.d4v1n71/3
title: Moth_sizes_ID

description: This dataset includes all values of surface area for the 130 measured moths. An explanation of how these data were generated is included in the publication's methods.
DOI: 10.5061/dryad.f8s1f6m/1
title: Data matrix with metadata

description: This .csv file contains the mass spectra data of all specimens investigated in this study as it was used for the analyses described. The data was processed as reported in the manuscript and finally hellinger transformed. Moreover, the file contains the sampling data on all contained specimens including sampling date, station number, latitude and longitude as well as sampling depth and species names in columns. The mass spectra data is provided in a matrix with specimens as rows and peak intensities in columns. Column names indicate the size of the measured proteins in Dalton.
DOI: 10.5061/dryad.g5b5q70/1
title: Multilocus microsatellite genotype file

description: Microsatellite multilocus genotypes for 903 individuals of Pyura chilensis collected in the southern Pacific coasts of Chile. Each row contains multilocus genotypic data for one individual. The first column contains the sampling site code, the second column contains the Point ID code, the third column contains the Percha ID code, the fourth column contains the Individual ID and the fifth column contains the sampling locality name. Details can be found in the main text of the associated article.
DOI: 10.5061/dryad.j78f467/1
title: EVOB-D-18-00410 Data used in analyses

description: Data used in phylogenomic analyses and population genomics.
DOI: 10.5061/dryad.ns8kp8j/1
title: Aln-Ped-cpDNA

description: Alignment of complete plastid genomes for eight samples in Fabaceeae (Ladeania lanceolata, Pediomelum argophylum, (2) Pediomelum digitatum, Pediomelum esculentum, (3) Pediomelum tenuiflorum)
DOI: 10.5061/dryad.p3123d8/1
title: Phenotype and genotype data used in L. saxatilis GWAS

description: 4066 SNP loci from 477 individuals identified using ddRAD, with minimum 70% genotyping rate, and no SNPs out of HWE. Phenotype file with aligned x and y coordinates, relative warps, partial warps, and centroid size.
DOI: 10.5061/dryad.s31v04d/1
title: Princen_etal_datafig1

description: CSV-file with raw peak areas of cuticular compounds on A. mellifera queens, virgin queens and workers, including compound ID and class..
DOI: 10.5061/dryad.s31v04d/2
title: R-Script-Princen_etal_Fig1
DOI: 10.5061/dryad.s31v04d/3
title: Princen_etal_datafig2

description: Bioassay data. CSV file
DOI: 10.5061/dryad.s31v04d/4
title: R-Script_Princen_etal_Fig2
DOI: 10.5061/dryad.t83d372/1
title: Midas transcriptome

description: RNA-Seq reads from 3 individuals of five Midas species (A. astorquii, A. zaliosus, A. amarillo A. sagittae, and A. citrinellus) sampled at 1 day post-hatching were generated. In addition,12 individuals sampled at 1 month post-hatching (1 mph) (Franchini, et al. 2016) were combined to build the reference transcriptome. The 490.3 million raw RNA-Seq paired-end reads were trimmed by Trimmomatic. The combination of reference-guided assembly by Stringtie and de novo assembly by Trinity were generated as Midas transcriptome.
DOI: 10.5061/dryad.td8d20v/17
title: 095-005.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/18
title: 095-010.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/19
title: 095-012.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/20
title: 095-013.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/21
title: 095-047.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5441/001/1.8b3k178b/1
title: Thick-billed murre Gilchrist and Elliott Coats 2017

description: Brisson-Curadeau É, Elliott KH (2019) Prey capture and selection throughout the breeding season in a deep-diving generalist seabird, the thick-billed murre. Journal of Avian Biology 50(7). doi:10.1111/jav.01930
description: Generalist seabirds forage on a variety of prey items providing the opportunity to monitor diverse aquatic fauna simultaneously. For example, the coupling of prey consumption rates and movement patterns of generalist seabirds might be used to create three‐dimensional prey distribution maps (‘preyscapes’) for multiple prey species in the same region. However, the complex interaction between generalist seabird foraging behaviour and the various prey types clouds the interpretation of such preyscapes, and the mechanisms underlying prey selection need to be understood before such an application can be realized. Central place foraging theory provides a theoretical model for understanding such selectivity by predicting that larger prey items should be 1) selected farther from the colony and 2) for chick‐feeding compared with self‐feeding, but these predictions remain untested on most seabird species. Furthermore, rarely do we know how foraging features such as handling time, capture methods or choice of foraging location varies among prey types. We used three types of animal‐borne biologgers (camera loggers, GPS and depth‐loggers) to examine how a generalist Arctic seabird, the thick‐billed murre Uria lomvia, selects and captures their prey throughout the breeding season. Murres captured small prey at all phases of a dive, including while descending and ascending, but captured large fish mostly while ascending, with considerably longer handling times. Birds captured larger prey and dove deeper during chick‐rearing. As central place foraging theory predicted, birds travelling further also brought bigger prey items for their chick. The location of a dive (distance from colony and distance to shore) best explained which prey type was the most likely to get caught in a dive, and we created a preyscape surrounding our study colony. We discuss how these findings might aid the use of generalist seabirds as bioindicators.
DOI: 10.5441/001/1.8b3k178b/2
title: Thick-billed murre Gilchrist and Elliott Coats 2017-reference-data

description: Brisson-Curadeau É, Elliott KH (2019) Prey capture and selection throughout the breeding season in a deep-diving generalist seabird, the thick-billed murre. Journal of Avian Biology 50(7). doi:10.1111/jav.01930
description: Generalist seabirds forage on a variety of prey items providing the opportunity to monitor diverse aquatic fauna simultaneously. For example, the coupling of prey consumption rates and movement patterns of generalist seabirds might be used to create three‐dimensional prey distribution maps (‘preyscapes’) for multiple prey species in the same region. However, the complex interaction between generalist seabird foraging behaviour and the various prey types clouds the interpretation of such preyscapes, and the mechanisms underlying prey selection need to be understood before such an application can be realized. Central place foraging theory provides a theoretical model for understanding such selectivity by predicting that larger prey items should be 1) selected farther from the colony and 2) for chick‐feeding compared with self‐feeding, but these predictions remain untested on most seabird species. Furthermore, rarely do we know how foraging features such as handling time, capture methods or choice of foraging location varies among prey types. We used three types of animal‐borne biologgers (camera loggers, GPS and depth‐loggers) to examine how a generalist Arctic seabird, the thick‐billed murre Uria lomvia, selects and captures their prey throughout the breeding season. Murres captured small prey at all phases of a dive, including while descending and ascending, but captured large fish mostly while ascending, with considerably longer handling times. Birds captured larger prey and dove deeper during chick‐rearing. As central place foraging theory predicted, birds travelling further also brought bigger prey items for their chick. The location of a dive (distance from colony and distance to shore) best explained which prey type was the most likely to get caught in a dive, and we created a preyscape surrounding our study colony. We discuss how these findings might aid the use of generalist seabirds as bioindicators.
DOI: 10.5441/001/1.8b3k178b/3
title: Feedingwatch_Coats_2017

description: Brisson-Curadeau É, Elliott KH (2019) Prey capture and selection throughout the breeding season in a deep-diving generalist seabird, the thick-billed murre. Journal of Avian Biology 50(7). doi:10.1111/jav.01930
description: Generalist seabirds forage on a variety of prey items providing the opportunity to monitor diverse aquatic fauna simultaneously. For example, the coupling of prey consumption rates and movement patterns of generalist seabirds might be used to create three‐dimensional prey distribution maps (‘preyscapes’) for multiple prey species in the same region. However, the complex interaction between generalist seabird foraging behaviour and the various prey types clouds the interpretation of such preyscapes, and the mechanisms underlying prey selection need to be understood before such an application can be realized. Central place foraging theory provides a theoretical model for understanding such selectivity by predicting that larger prey items should be 1) selected farther from the colony and 2) for chick‐feeding compared with self‐feeding, but these predictions remain untested on most seabird species. Furthermore, rarely do we know how foraging features such as handling time, capture methods or choice of foraging location varies among prey types. We used three types of animal‐borne biologgers (camera loggers, GPS and depth‐loggers) to examine how a generalist Arctic seabird, the thick‐billed murre Uria lomvia, selects and captures their prey throughout the breeding season. Murres captured small prey at all phases of a dive, including while descending and ascending, but captured large fish mostly while ascending, with considerably longer handling times. Birds captured larger prey and dove deeper during chick‐rearing. As central place foraging theory predicted, birds travelling further also brought bigger prey items for their chick. The location of a dive (distance from colony and distance to shore) best explained which prey type was the most likely to get caught in a dive, and we created a preyscape surrounding our study colony. We discuss how these findings might aid the use of generalist seabirds as bioindicators.
DOI: 10.15159/phytop.26
title: Lake Peipsi 1993 (Phytoplankton samples)

description: Methods: Samples were in most cases concentrated by precipitation up to 15 ml. Count was made on striped microscope slides within volume 0,1 ml. Microscopes: MBI-3 (magnification 15x20 and 15x40) and Jenaval (7x40). Macroscopic colonies of Gloeotrichia echinulata were counted visually in 500 ml measuring cylinder.
DOI: 10.15159/phytop.27
title: Lake Peipsi 1994 (Phytoplankton samples)

description: Methods: Samples were in most cases concentrated by precipitation up to 15 ml. Count was made on striped microscope slides within volume 0,1 ml. Microscopes: MBI-3 (magnification 15x20 and 15x40) and Jenaval (7x40). Macroscopic colonies of Gloeotrichia echinulata were counted visually in 500 ml measuring cylinder.
DOI: 10.17632/2h2wxbxnpw.2
title: Separation and purification of tantalum from plumbomicrolite of amazonite deposit in Kola Peninsula by acid leaching and solvent extraction

description: A plumbomicrolite concentrate (PMC) was decomposed with the mixture of HF and H2SO4, HF and HCl, HF and HNO3 acids. Optimal conditions ensuring high recovery of tantalum and niobium (99%) into solution, and radionuclides into insoluble residue were determined. Fluoride-sulfuric acid and fluoride-nitric acid schemes were proposed for PMC processing with an extraction separation of tantalum form niobium, lead and impurities and production of high-purity tantalum compounds.
DOI: 10.17632/4y7cvr7svs.1
title: Data for: A new idea for ambulance location problem in an environment under uncertainty in both path and average speed: Absolutely robust planning

description: This file includes distance matrix among 23 districts in Çankaya region in Ankara, Turkey.
DOI: 10.17632/6tf4rmx2km.1
title: Data for: Religion, Language, Race and Ethnic Voting

description: Replication material for Religion, Language, Race and Ethnic Voting.
DOI: 10.17632/gh7k6x463x.1
title: Data for: Factors behind Electricity Intensity and Efficiency: An Econometric Analysis for Pakistan
DOI: 10.17632/ymgtfpj3bw.1
title: Data for: Synchronous estimation of state of health and remaining useful lifetime for lithium-ion battery using the incremental capacity and artificial neural networks

description: NASA lithium battery dataset
DOI: 10.17632/z777h54xgs.2
title: Data for: A Corpus-Assisted Comparative Analysis of Voice and Stance in Doctoral Dissertations of Literary Studies written in Turkey and the UK

description: Raw and relative frequencies of self-mention markers in the dissertations of literature (UK vs TR)
DOI: 10.5061/dryad.15534h9/1
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on fructose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/2
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on fructose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/3
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on fructose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/4
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on glucose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/5
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on glucose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/6
title: LC-MS/MS identification of all surface-associated proteins from biofilm cells grown on glucose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/7
title: LC-MS/MS identification of all surface-associated proteins from planktonic cells grown on fructose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.15534h9/8
title: LC-MS/MS identification of all surface-associated proteins from planktonic cells grown on fructose

description: Mascot search result as in MGF file format reporting peak lists of mass spectrometry data (lists of mass and intensity pairs) from MS/MS spectra.
DOI: 10.5061/dryad.3jf80g4/1
title: Goumas et al. main dataset

description: The repeated measures data from fieldwork on gaze aversion in herring gulls that was used in the linear mixed-effects model.
DOI: 10.5061/dryad.3jf80g4/2
title: Goumas et al. R code

description: The R code used for the statistical analyses (linear mixed-effects model, model comparisons, and correlations) in Goumas et al. "Herring gulls respond to human gaze direction".
DOI: 10.5061/dryad.3jf80g4/3
title: Goumas et al. supplementary data

description: The data used in correlation analyses of within-individual approach times.
DOI: 10.5061/dryad.56r18rv/10
title: MeasurementsNewModel

description: Measurements of normalized opening width and of ridge formation from the revised kinetic model of the radular surface
DOI: 10.5061/dryad.5888cm4/1
title: delta Ct values for focal genes

description: This file contains Delta Ct values for gene expression used in subsequent analysis. Each row represents one individual fish, "Treatment" indicates the measured concentration of bifenthrin in each treatment group. Gcliv - indicates glucocorticoid receptor (liver), ChorLliv - indicates Choriogenin L receptor (liver), VtgCliv - indicates Vitellogenin C (liver), Erabrn - indicates Estrogen receptor alpha (brain), Arabrn - indicates Androgen receptor (brain), Cyp19brn indicates Cyp19 receptor (brain), GCbrn - indicates Glucocorticoid receptor (brain), NS1brn - indicates neuroserpin 1 receptor (brain).
DOI: 10.5061/dryad.89rr53h/1
title: Data from: Birds land reliably on complex surfaces by adapting their foot-surface interactions upon contact
DOI: 10.5061/dryad.8cj221n/2
title: Zosterops ND2 Mitochondrial Gene 744bp

description: This file contains sequences of the mtDNA gene ND2 for 75 Zosterops kulambangrae and 56 Z. murphyi. Each sequence is 744bp in length.
DOI: 10.5061/dryad.8cj221n/3
title: Body Patch Color Spectral Data

description: This zip file contains all of the raw spectral files (in the Master.Transmission format) from the back, belly, chest, and rump patches on each captured bird (Zosterops kulambangrae and Z. murphyi). A set of 3-4 feathers was taken from each body patch and mounted on black paper. We used an Ocean Optics USB2000 Spectrophotometer connected to a pulsed Xenon PX-2 light source.
DOI: 10.5061/dryad.d4v1n71/4
title: raw data - wav files flight recorder
DOI: 10.5061/dryad.f8s1f6m/2
title: Data_matrix_before_binning

description: This .csv data contains the mass spectra "raw data". Data was processed as described in the manuscript until the peak binning. Hence, this file contains the measurements of peaks without aligning them using peak binning.
DOI: 10.5061/dryad.f8s1f6m/3
title: MALDI TOF raw spectra

description: This .zip archive contains the raw measurements of all specimens investigated in this study. For each specimen there is a separate folder containing subfolders for each measurement that was carried out.
DOI: 10.5061/dryad.ht8g28b/1
title: Supplemental data Movie 1

description: Microtomographic reconstruction and rendering of the holotype specimen CUBar90-4
DOI: 10.5061/dryad.ht8g28b/2
title: Supplemental data Movie 2

description: 3D reconstructions of Septuconularia yanjiaheensis n. gen. n. sp.
DOI: 10.5061/dryad.mn84h20/1
title: Barbour et al. data

description: Daily energy expenditure and resting metabolic rate of badgers
DOI: 10.5061/dryad.ns8kp8j/2
title: Aln-Ped-nrDNA

description: Alignment of nrDNA (ITS1, 5.8S, and ITS2) for eight samples in Fabaceeae (Ladeania lanceolata, Pediomelum argophylum, (2) Pediomelum digitatum, Pediomelum esculentum, (3) Pediomelum tenuiflorum)
DOI: 10.5061/dryad.ns8kp8j/3
title: Aln-Ped-mtDNA

description: Alignment of 38 regions of the mitochondrial genome for eight samples in Fabaceeae (Ladeania lanceolata, Pediomelum argophylum, (2) Pediomelum digitatum, Pediomelum esculentum, (3) Pediomelum tenuiflorum)
DOI: 10.5061/dryad.ns8kp8j/4
title: Aln-Ped-8taxa-3genomes-FINAL

description: Alignment of complete plastid genomes, nrDNA (ITS1, 5.8S, and ITS2), and 38 regions of the mitochondrial genome for eight samples in Fabaceeae (Ladeania lanceolata, Pediomelum argophylum, (2) Pediomelum digitatum, Pediomelum esculentum, (3) Pediomelum tenuiflorum)
DOI: 10.5061/dryad.ns8kp8j/5
title: Aln-Pediomelum_32taxa-6regions

description: Alignment of a concatenation the following genomic regions: nrDNA ITS1, 5.8S, and ITS2 and five plastid regions (matK, rpoB-trnC, trnD-trnY, trnL-F, and trnS-trnG). trnL-F includes a portion of the trnL intron, trnL-UAA exon 2, and the trnL-trnF intergenic spacer (IGS). Alignment includes 32 samples as follows: Ladeania juncea, (2) Ladeania lanceolata, Orbexilum melanocarpum, Orbexilum virgatum, (2) Pediomelum argophyllum, Pediomelum aromaticum, Pediomelum californicum, Pediomelum canescens, Pediomelum castoreum, Pediomelum cuspidatum, Pediomelum cyphocalyx, (2) Pediomelum digitatum, (2) Pediomelum esculentum, Pediomelum humile, Pediomelum hypogaeum, Pediomelum latestipulatum, Pediomelum linearifolium, Pediomelum megalanthum, Pediomelum pariense, Pediomelum pentaphyllum, Pediomelum piedmontanum, Pediomelum reverchonii, (4) Pediomelum tenuiflorum, Rupertia hallii, Rupertia physodes
DOI: 10.5061/dryad.q5v0fv3/1
title: Data for mate choice behaviour

description: Dataset containing mate choice behaviour of male halfbeaks towards females that differed in body size, mating status and spot size.
DOI: 10.5061/dryad.q5v0fv3/2
title: Variation in spot size in female halfbeaks

description: Dataset containing the gravid spot size of female halfbeaks over the course of a brood cycle.
DOI: 10.5061/dryad.td8d20v/22
title: 097-001.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/23
title: 097-002.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/24
title: 097-003.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/25
title: 097-005.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/26
title: 097-006.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/27
title: 109-001.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/28
title: 109-002.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.td8d20v/29
title: 109-003.recalibrated.haplotypeCalls.vcf.gz
DOI: 10.5061/dryad.v41d698/1
title: Copepod behavior via auto tracking

description: See README for column descriptions
DOI: 10.5061/dryad.v41d698/2
title: Copepod behavior via manual tracking

description: See README for column descriptions
DOI: 10.5061/dryad.v41d698/3
title: Infection data

description: See README for column descriptions
DOI: 10.17632/39src4myfb.1
title: Data for: A new apparatus for the concurrent measurement of friction and permeability evolution in gouge
DOI: 10.17632/b8zzxzndps.1
title: Supplementary figure (AK)

description: Comparing the efficacy and the safety of KOH 5% solution with 5-Fluorouracil cream on patients suffering Actinic Keratosis: A Randomized controlled trial
DOI: 10.17632/hd7vc8tzwn.1
title: Data for: MIDDLE PLEISTOCENE FORMATION OF THE RIO GRANDE GORGE, SAN LUIS VALLEY, SOUTH-CENTRAL COLORADO AND NORTH-CENTRAL NEW MEXICO, USA: PROCESS, TIMING, AND DOWNSTREAM IMPLICATIONS

description: 3He surface exposure dating methods and U-Th series disequilibria dating of pedogenic carbonates
DOI: 10.17632/tzmkg9c7y8.1
title: Data for: Numerical characterization for rock mass integrating GSI/Hoek-Brown system and synthetic rock mass method

description: DFN