cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12849644.v2
title: Influence of age and education on a performance-based measure of everyday functioning

description: Sociodemographic variables, such as age and education, influence the determination of impairment on neuropsychological tests, but their influence on impairment determinations for tests of everyday functioning is less well defined. Existing studies suggest that older age and lower education levels are associated with worse everyday functioning when assessed by self- or collateral-report. This relationship, however, has not been thoroughly investigated with performance-based methods of everyday functioning. This study aimed to determine the influence of sociodemographic factors on the Functional Impact Assessment (FIA), a performance-based measure of everyday functioning that includes measures of both accuracy and speed. Seventy-three healthy individuals, ages 42 − 88 years, completed the FIA and an additional everyday functioning self-report questionnaire (Functional Activities Questionnaire). Using a multiple regression statistical approach, age and education predicted overall FIA accuracy, while age alone predicted FIA speed. Sociodemographic variables continued to predict FIA performance when controlling for overall cognitive functioning. Sociodemographic variables were unrelated to FAQ scores. These findings indicate that age and education are associated with scores on a performance-based test of everyday functioning. Demographic corrections may improve accuracy in determining functional impairment, but more research is needed given the complex relationships among demographic factors, healthy aging, and dementia risk.
DOI: 10.6084/m9.figshare.12496781
title: Assessment of semantic memory in mild cognitive impairment: The psychometric properties of a novel semantic battery

description: Semantic memory is stable in healthy older adults but shows decline in mild cognitive impairment (MCI). Current measures of semantic function do not assess multiple aspects of semantic function and/or are time-consuming to administer. Here we report the psychometric properties of a battery to detect semantic impairment that we recently developed and published. Study 1 determined the face validity of the battery; interviews were conducted with five professionals with expertise in MCI and language. Face validity interviews suggested the battery appropriately assesses semantic impairments. Study 2 assessed convergent validity and reliability (inter-rater reliability, test-retest reliability, and internal consistency). Participants included 102 healthy older adults and 60 people with MCI who completed a four-task semantic battery. Results demonstrate that performance on the semantic battery correlates with traditional measures of semantic function, inter-rater reliability and internal consistency was high, and there was no significant change in mean scores between participants’ first and second testing sessions. The present findings suggest that the semantic battery is a reliable and valid assessment of semantic function. It is currently recommended for research use only.
DOI: 10.34740/kaggle/dsv/3962746
title: Challenge 1 - COVID-19 in LATAM
DOI: 10.25439/rmt.12356069
title: 2011 UK Riots Tweets

description: Collection of tweets captured at the time of the 2011 UK Riots. <br>https://rd.eres.rmit.edu.au/experiment/view/3/<br><br>This collection is only partial, retrieved via the streaming API. The data provides a historical record of public discussion on Twitter during a significant social happening. It also represents a useful resources for experimentation and methodological development. The data is both a social and an informational resource, enabling the analysis of a significant social event and the development/application of computational tools for, among other aims, natural language processing, information retrieval, meta data analysis. In addition to the principle collection of tweets (UK Riots Database), a sub-collection has been extracted that includes only the geo-tagged tweets. Finally, these databases are stored on MongoDB and are made queryable using a special interface (see the UK Riots Database for access and instructions) that allows queries to be stored in another dataset, shared, and re-executed.<br>
DOI: 10.25439/rmt.12356069.v2
title: 2011 UK Riots Tweets

description: Collection of tweets captured at the time of the 2011 UK Riots. <br>https://rd.eres.rmit.edu.au/experiment/view/3/<br><br>This collection is only partial, retrieved via the streaming API. The data provides a historical record of public discussion on Twitter during a significant social happening. It also represents a useful resources for experimentation and methodological development. The data is both a social and an informational resource, enabling the analysis of a significant social event and the development/application of computational tools for, among other aims, natural language processing, information retrieval, meta data analysis. In addition to the principle collection of tweets (UK Riots Database), a sub-collection has been extracted that includes only the geo-tagged tweets. Finally, these databases are stored on MongoDB and are made queryable using a special interface (see the UK Riots Database for access and instructions) that allows queries to be stored in another dataset, shared, and re-executed.<br>
DOI: 10.25439/rmt.12356069.v1
title: 2011 UK Riots Tweets

description: Collection of tweets captured at the time of the 2011 UK Riots. This collection is only partial, retrieved via the streaming API. The data provides a historical record of public discussion on Twitter during a significant social happening. It also represents a useful resources for experimentation and methodological development. The data is both a social and an informational resource, enabling the analysis of a significant social event and the development/application of computational tools for, among other aims, natural language processing, information retrieval, meta data analysis. In addition to the principle collection of tweets (UK Riots Database), a sub-collection has been extracted that includes only the geo-tagged tweets. Finally, these databases are stored on MongoDB and are made queryable using a special interface (see the UK Riots Database for access and instructions) that allows queries to be stored in another dataset, shared, and re-executed.<br>
DOI: 10.5281/zenodo.5589657
title: LAMMPS data file for 2,2,4-trimethylhexane lubricant molecule

description: -
DOI: 10.5281/zenodo.5589656
title: LAMMPS data file for 2,2,4-trimethylhexane lubricant molecule

description: -
DOI: 10.5281/zenodo.6864324
title: Erythroxylum fimbriatum decontaminated gx

description: .
DOI: 10.5281/zenodo.6864323
title: Erythroxylum fimbriatum decontaminated gx

description: .
DOI: 10.6084/m9.figshare.19715029
title: code from SpaceFold paper

description: jupyter notebooks and R code and dataset related to the SpaceFold paper. <br> <strong>BayesPrism_outs.zip </strong>: output from BayesPrism. performed a single run of BayesPrism on each tissue by combining two Visium replicates. sig.rdata: run using signature genes. full.rdata: run using full genes (after a mild selection for expressed genes). <br> <strong>SpaceRanger_outs.zip:</strong> raw output from the Space Ranger. Note that bam files were excluded to reduce the file size. All other files outputed by Space Ranger were included. <br> <strong>features.tsv.gz : </strong>gene annotation from Space Ranger. <br> <strong>SI_adata_paper.h5ad</strong> and <strong>LI_adata_paper.h5ad</strong> : scanpy-processed single cell data from mouse small and large intestine. The cell state column was used for devonvolution. Note that the raw reads were cell-bender corrected reads, which may differ from the cell ranger ouput from GEO. <br> <strong>SI_clustering_paper.ipynb</strong> and <strong>LI_clustering_paper.ipynb</strong>: jupyter notebook for processing the scRNA-seq. <br>
DOI: 10.25919/z84b-ae94
title: Indonesian Hybrid Landcover 2020 - GeoTIFF

description: This dataset is a 10m resolution, Land Use/Land Cover (LULC) GeoTIFF, created from several open source data products and covering the Republic of Indonesia for the year 2019/2020. This dataset is used in an interactive R Shiny application to generate landscape metrics at user defined locations.
DOI: 10.6084/m9.figshare.20341401.v1
title: ANEXO II

description: Cuadro de los contaminantes del aire y las unidades monitoras ZMVM incluidos en el estudio.
DOI: 10.6084/m9.figshare.20341401
title: ANEXO II

description: Cuadro de los contaminantes del aire y las unidades monitoras ZMVM incluidos en el estudio.
DOI: 10.17632/2mgd5gnjc4.1
title: Dataset on fungal communities in common reed

description: Dataset contains results of shotgun metagenomes of fungal colonisers of common reed leaves and litter in different habitats.
DOI: 10.17632/7km339y9tm.1
title: Valproic acid mediated upregulation of ABCG2 via lipid-activated transcription factor PPARα in human brain endothelial cells

description: Supplementary data figures to paper "Valproic acid mediated upregulation of ABCG2 via lipid-activated transcription factor PPARα in human brain endothelial cells".
DOI: 10.6084/m9.figshare.20341446
title: EdU Optimization - Optimized Procedure Example

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, in a 1:1 ratio of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria of healthy mice. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria. <br> In the file names: w = with wo = without AF = Alexa Fluorphore 647
DOI: 10.6084/m9.figshare.20341446.v1
title: EdU Optimization - Optimized Procedure Example

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, in a 1:1 ratio of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria of healthy mice. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria. <br> In the file names: w = with wo = without AF = Alexa Fluorphore 647
DOI: 10.6084/m9.figshare.20326650
title: Bacterial Isolate Microscopy

description: <em><strong>Epifluorescence microscopy of gut bacterial isolates after EdU-click</strong></em>. Human gut bacterial isolates which underwent EdU-click with or without EdU were stained with Sybr Green I nucleic acid dye and visualized using epifluorescence microscopy. Green = Sybr Green I, staining all bacterial nucleic acid content; Red = Alexa Fluor 647 azide, staining only newly replicated bacterial DNA. <br> All slides were visualized using the Axiovert 3 widefield inverted microscope (Zeiss) equipped with a Zeiss Axiocam 506 monochrome CCD camera (2752 x 2208 pixels, 4.54 um pixels) and Sola SM solid state light engine, using the 100X objective (PLAN-APOCHROMAT, NA=1.4, OIL, Iris) under oil immersion and the FS 24 (FITC) and FS 32 (Cy5) fluorescence cubes. Images were further processed in Fiji (version 1.53q)
DOI: 10.6084/m9.figshare.20326650.v1
title: Bacterial Isolate Microscopy

description: <em><strong>Epifluorescence microscopy of gut bacterial isolates after EdU-click</strong></em>. Human gut bacterial isolates which underwent EdU-click with or without EdU were stained with Sybr Green I nucleic acid dye and visualized using epifluorescence microscopy. Green = Sybr Green I, staining all bacterial nucleic acid content; Red = Alexa Fluor 647 azide, staining only newly replicated bacterial DNA. <br> All slides were visualized using the Axiovert 3 widefield inverted microscope (Zeiss) equipped with a Zeiss Axiocam 506 monochrome CCD camera (2752 x 2208 pixels, 4.54 um pixels) and Sola SM solid state light engine, using the 100X objective (PLAN-APOCHROMAT, NA=1.4, OIL, Iris) under oil immersion and the FS 24 (FITC) and FS 32 (Cy5) fluorescence cubes. Images were further processed in Fiji (version 1.53q)
DOI: 10.6084/m9.figshare.20341440
title: Water-organizing motif continuity is critical for potent ice nucleation protein activity (Nature Communications)

description: Ice nucleation assay data, synthesized gene sequence, and AlphaFold input parameters + output PDB file.
DOI: 10.6084/m9.figshare.20326662
title: EdU Optimization - Concentration Tests - 10-100 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20326662.v1
title: EdU Optimization - Concentration Tests - 10-100 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338896
title: EdU Optimization - Concentration Tests - 20-80 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338896.v1
title: EdU Optimization - Concentration Tests - 20-80 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338914
title: EdU Optimization - Concentration Tests - 10-35 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338914.v1
title: EdU Optimization - Concentration Tests - 10-35 um EdU

description: Flow cytometry data on mouse fecal bacteria incubated with varying concentrations of 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338929
title: EdU Optimization - Incubation Test #1

description: Flow cytometry data on mouse fecal bacteria incubated for various lengths of time with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338929.v1
title: EdU Optimization - Incubation Test #1

description: Flow cytometry data on mouse fecal bacteria incubated for various lengths of time with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338935
title: EdU Optimization - Incubation Test #2

description: Flow cytometry data on mouse fecal bacteria incubated for various lengths of time with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20338935.v1
title: EdU Optimization - Incubation Test #2

description: Flow cytometry data on mouse fecal bacteria incubated for various lengths of time with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341023
title: EdU Optimization - Media Tests #1

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341023.v1
title: EdU Optimization - Media Tests #1

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341380
title: EdU Optimization - Media Tests #2

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341380.v1
title: EdU Optimization - Media Tests #2

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341386
title: EdU Optimization - Media Tests #3

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341386.v1
title: EdU Optimization - Media Tests #3

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341389
title: EdU Optimization - Media Tests #4

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341389.v1
title: EdU Optimization - Media Tests #4

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue in varying ratios of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.
DOI: 10.6084/m9.figshare.20341392
title: Antibiotics Experiment - Cell sorting

description: Flow cytometry data on mouse fecal bacteria incubated for three hours with (or without) 20 uM 5-ethnyl-2'-deoxyuridine (EdU), a thymidine analogue, in a 1:1 ratio of reduced Brain Heart Infusion (rBHI) broth and fecal slurry (FS), to capture the actively replicating bacteria. <br> Bacteria were exposed to Polymyxin B (all samples with "P"), Vancomycin ("V"), or the vehicle (DMSO; "C") for one hour before incubation with EdU. The antibiotics had a final concentration of 0.1 mg.mL-1. <br> The bacterial cells underwent a click reaction with Alexa Fluor 647 azide (APC channel) to make newly replicated bacteria fluoresece. They were also stained with Sybr Green I nucleic acid stain (FITC channel) to capture all bacteria.