cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34894/9qbwr1
title: Publication package for Article 'Happy for Us not Them: Differences in neural activation in a vicarious reward task between family and strangers during adolescent development'

description: &lt;p&gt;This is the complete Publication Package for the Article: "Happy for Us not Them: Differences in neural activation in a vicarious reward task between family and strangers during adolescent development"&lt;/p&gt;
&lt;p&gt;&lt;br&gt;&lt;/p&gt;
&lt;p&gt;Please start with the README file first.&lt;/p&gt;
&lt;p&gt;&lt;br&gt;&lt;/p&gt;
&lt;p&gt;During adolescence social-interactions with other people become more relevant. One key aspect of these interactions is cooperative behavior. Cooperation relies on a set of cognitive and affective mechanisms. In this study, we focused on the mental ability to feel happy for another person's positive experience, called vicarious joy. We investigated the neural mechanisms of this ability using a false-choice vicarious reward fMRI task. Participants played a game where they could win monetary rewards for themselves, their mother, their father, and a stranger. A region-of-interest (ROI) analysis of the Nucleus Accumbens revealed robust activation in this region for personal reward as well as vicarious rewards for both parents. Vicarious reward for a stranger was not associated with activation within the Nucleus Accumbens. ROI activation was associated with self-reported vicarious joy for mother and father. A Prisoner's Dilemma game outside the scanner showed an increase in cooperative behavior until age 14 for parents and strangers, followed by a decline for the stranger but not for the parents. Together, these findings demonstrate that adolescence is an important time for developing ingroup-outgroup relations.&lt;/p&gt;
description: This entry is a seven-file data package totaling 14.4 MB, containing files in .pdf, .doc, .html, .md, .csv, .ipynb and .docx formats.If you use this dataset, please cite: Brandner, Philip; Güroğlu, Berna; van de Groep, Suzanne; Spaans, Jochem; Crone, Eveline A. (2022). Publication package for Article 'Happy for Us not Them: Differences in neural activation in a vicarious reward task between family and strangers during adolescent development'. Erasmus University Rotterdam (EUR). Dataset. https://doi.org/10.25397/eur.20747095
DOI: 10.15468/dl.dx4q6t
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((82.28164 45.51296,99.2357 45.51296,99.2357 53.37541,82.28164 53.37541,82.28164 45.51296))",
 "TaxonKey is Allium pumilum"
 ]
}

 The dataset includes 174 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027649-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qzrv7w
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cenchrus purpureus",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027648-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yb22eb
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria maximowiczii"
 ]
}

 The dataset includes 354 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027650-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7trzna
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cenchrus purpureus",
 "Country is Cambodia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027651-250811113504898/datasets/export for details.
DOI: 10.34894/eo5ati
title: Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence_dataset

description: &lt;p&gt;Complete dataset of the article' Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence'&lt;b&gt;&lt;/b&gt;&lt;/p&gt;
description: This entry is a one-file data package totaling 335.6 KB, containing a file in .sav format.If you use this dataset, please cite: Sweijen, Sophie; van de Groep, Suzanne; Green, Kayla; te Brinke, Lysanne; Buijzen, Moniek; N.H. de Leeuw, Rebecca; et al. (2022). Daily prosocial actions during the COVID-19 pandemic contribute to giving behavior in adolescence_dataset. Erasmus University Rotterdam (EUR). Dataset. https://doi.org/10.25397/eur.14916531
DOI: 10.15468/dl.xzvb4u
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fritillaria usuriensis"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027653-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52wuyc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cenchrus purpureus",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027655-250811113504898/datasets/export for details.
DOI: 10.15468/dl.j4cwk7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Valeriana briquetiana"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027654-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79xf36
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cenchrus purpureus",
 "Country is Costa Rica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 219 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027656-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11550905
title: HDAC7 induction combined with standard-of-care chemotherapy provides a  therapeutic advantage in t(4;11) infant B-ALL (Dataset)

description: Infants diagnosed with B cell acute lymphoblastic leukemia (B-ALL) and t(4;11) chromosomal rearrangements represent a subset of patients with poor therapeutic response. t(4;11) B-ALL cells exhibit low levels of HDAC7, which is essential for optimal B lymphocyte differentiation. Here, we show that HDAC7 silencing in this malignancy is mediated by epigenetic mechanisms involving the chromatin remodeler EZH2 and the KMT2A-AFF1 fusion protein. This dataset contains the processed ChIPseq data files (bigwig and narrowpeaks) from the publication.
DOI: 10.5281/zenodo.11550906
title: HDAC7 induction combined with standard-of-care chemotherapy provides a  therapeutic advantage in t(4;11) infant B-ALL (Dataset)

description: Infants diagnosed with B cell acute lymphoblastic leukemia (B-ALL) and t(4;11) chromosomal rearrangements represent a subset of patients with poor therapeutic response. t(4;11) B-ALL cells exhibit low levels of HDAC7, which is essential for optimal B lymphocyte differentiation. Here, we show that HDAC7 silencing in this malignancy is mediated by epigenetic mechanisms involving the chromatin remodeler EZH2 and the KMT2A-AFF1 fusion protein. This dataset contains the processed ChIPseq data files (bigwig and narrowpeaks) from the publication.
DOI: 10.15468/dl.ncfccx
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fritillaria verticillata"
 ]
}

 The dataset includes 21 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027657-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10668686
title: Integration of Multi-Omics layers empowers precision diagnosis through unveilling pathogenic mechanisms of Maple Syrup Urine Disease

description: Purpose:

Maple syrup urine disease (MSUD) is a rare inherited metabolic disorder characterized by deficient activity of the branched-chain alpha-ketoacid dehydrogenase (BCKD) complex, required to metabolize the amino acids leucine, isoleucine and valine. Despite its profound metabolic implications, the molecular alterations underlying this metabolic impairment had not yet been elucidated.

Methods:

We performed a comprehensive multi-omics integration analysis, including genomic, epigenomic and transcriptomic data from fibroblasts derived from a cohort of MSUD patients and unaffected controls to genetically characterize a MSUD case and to unravel the MSUD pathophysiology.

Results:

The integration of multi-omics layers facilitated the identification of a strong epigenetic repression in the DBT promoter in a patient wherein no BCKD pathogenic variants had been detected, thereby unveiling alternative modes of disease inheritance and confirming its diagnosis potential. Furthermore, MSUD patients exhibit a defined episignature that reshapes the global DNA methylation landscape, resulting in the stimulation of HOX cluster genes and the restriction of cell cycle gene-related signatures. Subsequent data integration revealed the impact of AP1-related and CEBPB transcription factors on the observed molecular reorganization, with MEIS1 emerging as a potential downstream candidate affected by robust epigenetic repression in MSUD patients.

Conclusion:

Integration of multi-omics data unveiled underlying molecular networks rewired in MSUD patients and represents a powerful approach with diagnostic potential for rare genetic disorders with unknown genetic bases.
DOI: 10.5281/zenodo.10668685
title: Integration of Multi-Omics layers empowers precision diagnosis through unveilling pathogenic mechanisms of Maple Syrup Urine Disease

description: Purpose:

Maple syrup urine disease (MSUD) is a rare inherited metabolic disorder characterized by deficient activity of the branched-chain alpha-ketoacid dehydrogenase (BCKD) complex, required to metabolize the amino acids leucine, isoleucine and valine. Despite its profound metabolic implications, the molecular alterations underlying this metabolic impairment had not yet been elucidated.

Methods:

We performed a comprehensive multi-omics integration analysis, including genomic, epigenomic and transcriptomic data from fibroblasts derived from a cohort of MSUD patients and unaffected controls to genetically characterize a MSUD case and to unravel the MSUD pathophysiology.

Results:

The integration of multi-omics layers facilitated the identification of a strong epigenetic repression in the DBT promoter in a patient wherein no BCKD pathogenic variants had been detected, thereby unveiling alternative modes of disease inheritance and confirming its diagnosis potential. Furthermore, MSUD patients exhibit a defined episignature that reshapes the global DNA methylation landscape, resulting in the stimulation of HOX cluster genes and the restriction of cell cycle gene-related signatures. Subsequent data integration revealed the impact of AP1-related and CEBPB transcription factors on the observed molecular reorganization, with MEIS1 emerging as a potential downstream candidate affected by robust epigenetic repression in MSUD patients.

Conclusion:

Integration of multi-omics data unveiled underlying molecular networks rewired in MSUD patients and represents a powerful approach with diagnostic potential for rare genetic disorders with unknown genetic bases.
DOI: 10.15468/dl.nc7wj5
title: Occurrence Download

description: A dataset containing 5110927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((36.79609 8.12994,171.20391 8.12994,171.20391 61.87006,36.79609 61.87006,36.79609 8.12994))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1998-2025"
 ]
}

 The dataset includes 5110927 records from 2502 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027629-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.274gb5
title: Occurrence Download

description: A dataset containing 3527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kiribati",
 "Depth 1000.0-9999.0m",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 3527 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006061-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhgpcs
title: Occurrence Download

description: A dataset containing 6170 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección de Entomología del Instituto de Ciencias Naturales (ICN-MHN-En)"
 ]
}

 The dataset includes 6170 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000246-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15549886
title: AI-News articles set
DOI: 10.5281/zenodo.15549887
title: AI-News articles set
DOI: 10.25451/flinders.29192657
title: Common knowledge translation approaches to working in partnership Untitled Item

description: Common knowledge translation approaches to working in partnership
DOI: 10.25451/flinders.29192657.v1
title: Common knowledge translation approaches to working in partnership Untitled Item

description: Common knowledge translation approaches to working in partnership
DOI: 10.3535/bs3-9gv-xjz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t6p-b0b-5gk
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/enk-cmx-r6n
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5s6-8e4-19h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yjg-h0x-xql
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w34-d5d-521
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ygk-tt3-81a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cr6-9y8-fv0
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0e0-v4v-yr1
title: Rhinoceros sondaicus Desmarest, 1822

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hay-2nf-7rs
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qbh-1ja-w3m
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vy9-1xh-8bl
title: Panthera pardus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1yv-pzv-2ze
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ys-hev-q0d
title: Cervidae Goldfuss, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5kh-2jc-3hl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y7r-rav-7ky
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8ql-8k0-7ex
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4mq-a7j-gj0
title: Chitra

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q2j-44w-c59
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b6l-vsl-t9g
title: Macaca Lacépède, 1799

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fbv-mdp-gsg
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2jc-nen-yyt
title: Elephas Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ffl-41l-8xx
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qtb-6dc-6c5
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/10w-qky-hzq
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/whw-yth-gpc
title: Symphalangus syndactylus (Raffles, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9rq-llf-kmk
title: Crocodylus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e5q-886-n3m
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8g3-3lw-3fw
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdd-pdl-3dn
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ae-fp4-mjt
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l16-772-9hg
title: Macaca fascicularis (Raffles, 1821)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kbp-83z-xts
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ww3-q39-zy2
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/law-t42-xgw
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tg5-344-vgp
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4g6-me8-5dd
title: Pongo pygmaeus (Linnaeus, 1760)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x40-jpd-a6n
title: Cervus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ev2-4h8-kgl
title: Paradoxurus hermaphroditus (Pallas, 1777)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t12-5m2-h6r
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lck-ys8-spq
title: Duboisia Szidat, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.2xjdr2
title: Occurrence Download

description: A dataset containing 1351489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is 2004",
 "Month is April"
 ]
}

 The dataset includes 1351489 records from 530 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002275-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13369742
title: cfDNAanalyzer: a comprehensive toolkit for analyzing cell-free DNA genomic sequencing data in liquid biopsy

description: This repository contains example files for cfDNAanalyzer (cell-free DNA sequencing data analyzer), a toolkit for cfDNA whole-genome sequencing data analysis. 

group1_*.bam are BAM files of cfDNA WGS, serving as the Group 1 for running cfDNAanalyzer in a two-class model scenario.group2_*.bam are BAM files of cfDNA WGS, serving as the Group 2 for running cfDNAanalyzer in a two-class model scenario.bam_input.txt contains the paths to all the BAM files which is required by cfDNAanalyzer.test.bed contains genomic regions of chromosome 1, which could serve as the input for analysis on specific regions.example.fa is the reference genome for running cfDNAanalyzer using the example BAM and BED files.
DOI: 10.5281/zenodo.15287611
title: cfDNAanalyzer: a comprehensive toolkit for analyzing cell-free DNA genomic sequencing data in liquid biopsy

description: This repository contains example files for cfDNAanalyzer (cell-free DNA sequencing data analyzer), a toolkit for cfDNA whole-genome sequencing data analysis. 

group1_*.bam are BAM files of cfDNA WGS, serving as the Group 1 for running cfDNAanalyzer in a two-class model scenario.group2_*.bam are BAM files of cfDNA WGS, serving as the Group 2 for running cfDNAanalyzer in a two-class model scenario.bam_input.txt contains the paths to all the BAM files which is required by cfDNAanalyzer.test.bed contains genomic regions of chromosome 1, which could serve as the input for analysis on specific regions.example.fa is the reference genome for running cfDNAanalyzer using the example BAM and BED files.