cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.86sk5/5
title: GrasonAmNat2016LittorinaData

description: Tables 1-7. Observed behavior of Littorina sitkana in response to cues from Cancer productus from 1 of 7 experiments.

	Fields: 
	1. Date - Date of observation
	2. bin - replicate
	3. tmt - Cue Treatment (as described and abbreviated in table 1 of Grason AmNat, 		with the exception that the letter “P” is used in the manuscript to stand for Predator cues, while in these files “C” is used to stand in for Crab, thus “CxIC” here is the Crab consuming conspecific prey)
	4. crab - Presence of crab/predator cues in cue treatment (Y/N)
	5. ic - presence of chemical cues from injured conspecifics in cue treatment (Y/N)
	6. hide/hiding - how many snails were “hiding” under structure in bin on that observation date, total number of snails in bin is 1 unless otherwise listed in Table 2 of manuscript
	7. run/running - how many snails were attempting to “flee” by emersing on that date
	8. both - sum of “run” and “hide” 
	9. cum.hide - cumulative number of “hide” observations for that bin to date, used for calculating best metric of avoidance.
	10. cum. run - as above for emersion behavior
	11. cum.both - as above for sum of run and hide
	12. no.snails (in some tables) - total number of snails in bin on which behavioral obs were made
	13. #notes (in some tables) - detailed related to removal of snails due to death.
DOI: 10.5061/dryad.86sk5/6
title: GrasonAmNat2016NucellaData

description: Tables 1-7. Observed behavior of Nucella lamellosa in response to cues from Cancer productus from 1 of 7 experiments.

	Fields: 
	1. Date - Date of observation
	2. bin - replicate
	3. tmt - Cue Treatment (as described and abbreviated in table 1 of Grason AmNat, 		with the exception that the letter “P” is used in the manuscript to stand for Predator cues, while in these files “C” is used to stand in for Crab, thus “CxIC” here is the Crab consuming conspecific prey)
	4. crab - Presence of crab/predator cues in cue treatment (Y/N)
	5. ic - presence of chemical cues from injured conspecifics in cue treatment (Y/N)
	6. hide/hiding - how many snails were “hiding” under structure in bin on that observation date, total number of snails in bin is 1 unless otherwise listed in Table 2 of manuscript
	7. run/running - how many snails were attempting to “flee” by emersing on that date
	8. both - sum of “run” and “hide” 
	9. cum.hide - cumulative number of “hide” observations for that bin to date, used for calculating best metric of avoidance.
	10. cum. run - as above for emersion behavior
	11. cum.both - as above for sum of run and hide
	12. no.snails (in some tables) - total number of snails in bin on which behavioral obs were made
	13. #notes (in some tables) - detailed related to removal of snails due to death.
DOI: 10.5061/dryad.8b0m1/1
title: Data underlying figure 2

description: Effects of ovule fertilization rate on the selected optimal seed size (fig. 2A), allocation to post-breeding adult survival (fig. 2B) and number of ovules produced (fig. 2C) under density-independent population growth.
DOI: 10.5061/dryad.8b0m1/2
title: Data underlying figure 3

description: Effects of ovule fertilization rate on the selected optimal seed size (fig. 3A), allocation to post-breeding adult survival (fig. 3B) and number of ovules produced (fig. 3C) under density-independent population growth.
DOI: 10.5061/dryad.8pm7h/1
title: Oyster survival during 6-week reciprocal transplant experiment

description: Oyster survival across predation treatments at 3 experimental sites at the end of a 6-week reciprocal transplant experiment.
DOI: 10.5061/dryad.8pm7h/2
title: Oyster growth during 6-week reciprocal transplant experiment

description: Oyster shell length in no predation (cage; C) treatments at the beginning and end of a 6-week reciprocal transplant experiment across three sites.
DOI: 10.5061/dryad.8pm7h/3
title: Oyster condition during 6-week reciprocal transplant experiment

description: Oyster condition in the absence of predation (cage treatment; C) at the end of a 6-week reciprocal transplant experiment at 3 sites. Data were analyzed both as tissue mass per top shell area and tissue mass per length cubed.
DOI: 10.5061/dryad.b4s20/1
title: CMR data juvenile Placid Greenbul - Van de Loock et al. 2017 Ecol&Evol

description: Resighting dataset of juvenile Placid greenbuls since fledging (day 1). Collected at Taita Hills, SE Kenya using an indirect radio-telemetry approach by tagging and relocating the breeding female.
DOI: 10.5061/dryad.b9482/1
title: Sanger sequences

description: Alignments for the Sanger sequences of mitochondrial markers COI, CytB and CR, and nuclear markers TMO and RAG2. The names of the individuals include the respective collection sites. The abbreviation Hmacu corresponds to Haemulon maculicauda, and Hflav to Haemulon flaviguttatum.
DOI: 10.5061/dryad.b9482/2
title: Genotype data in STRUCTURE format

description: The analyses corresponding to the SNP dataset (obtained via RADSeq) are based on this genotype dataset in STRUCTURE format. The first column represents the sample name, second column corresponds to the "population" of origin (2 species and 2 locations), and the rest of the columns represent the genotypes for the specific loci. The names of the individuals contain the location site and the abbreviation Hmac corresponds to Haemulon maculicauda, and Hflav corresponds to Haemulon flaviguttatum.
DOI: 10.5061/dryad.b9482/3
title: Input file for Migrate-n

description: This text file contains the sequences that were used for the analysis of migration presented in the manuscript, which were performed with Migrate-n. Sequences of both species were separated, but there was no distinction made by collection site.
DOI: 10.5061/dryad.c186k/4
title: Proportions

description: ArcSin transformed proportional data for traits.
DOI: 10.5061/dryad.d15b0/1
title: boutdetails

description: Details include year of data collection, litter ID, age and current litter size for all nursing bouts. For each bout, data is provided on the duration of the bout (in minutes), Identity of initiator and Individual from which the pups have suckled (mother or allomother) for 2483 nursing bouts.
DOI: 10.5061/dryad.d15b0/2
title: boutinitiation

description: Details of nursing bouts which include litter ID, current litter size and age for each record. For each litter, we have provided the number of mother-initiated nursing bouts and pup-initiated suckling bouts at each week of pup age.
DOI: 10.5061/dryad.d15b0/3
title: refusal

description: For each bout of nursing/suckling, we provide details of litter ID, current litter size and age. For each litter, at each age, we provide the proportion of mother-mediated terminations of nursing and allomother-mediated nursing.
DOI: 10.5061/dryad.d3q4q.1
title: Data from: Examining the occupancy-density relationship for a low density carnivore
DOI: 10.5061/dryad.d3q4q.1/1.1
title: Fisher detection–non-detection data

description: This text file contains an R-formatted list of data objects for fitting occupancy models in the "unmarked" package.
DOI: 10.5061/dryad.d3q4q.2/2.2
title: Script for model running

description: This text file contains R script for reading in the fisher
data and fitting occupancy and SCR models.
DOI: 10.5061/dryad.d3q4q.2/4.2
title: Fisher statespace grid

description: This csv file contains the original UTMs (Zone 18) and relative XY coordinates for the statespace grid used to predict fisher occupancy and density, as well as standardized pixel values for coniferous-mixed forest and road density.
DOI: 10.5061/dryad.db40p/1
title: Genetics

description: Two GENEPOP files representing the filtered CB_GEN (1 990 SNPs) and CBV_GEN (3 313 SNPs) datasets. Sequential population factors for these files are: 1) DY, SNARRC and 2) DY, SNARRC, BL, respectively.
DOI: 10.5061/dryad.db40p/2
title: Morphometrics

description: Two TPS files of raw Cartesian coordinates (CB_MORPH, CBV_MORPH), and the MORPHOJ project file used for morphometric analyses.
DOI: 10.5061/dryad.f78b1/1
title: Appendix S2

description: Data for all colonies used in the study. Columns: "Colony_ID"; "Generation" = 0-3 "Group" = High/Low/NA for colonies in the High and Low selection lines as well as initial colonies that were not selection; "Group2" = High1, High2, Low1, Low2, NA, specifying which replicate group colonies were in; "Replicate" = 1,2,0 redundant with Group2; "Parent" = YES/NO for whether colonies were selected as parents for the next generation; "workers", "gynes", "males" = the total number of workers, gynes, and males produced; "survived" = YES/NO, whether the colony survived to produce any individuals; "reproduced" = YES/NO, whether the colony produced any gynes or males.
DOI: 10.5061/dryad.f78b1/2
title: Appendix S3

description: Complete annotated R script to reproduce the results and graphs.
DOI: 10.5061/dryad.g4p30/1
title: Cat mtDNA fragments

description: Nine ND5 gene fragments were amplified via multiplex PCR and either sequenced by NGS in bulk following the “aMPlex Torrent” workflow, or reamplified individually by nested PCR and sequenced by pyrosequencing (see Ottoni et al, 2017, Nature Ecol Evol in press). The nine sequences obtained by “aMPlex Torrent” for each specimen were concatenated using a 10 N intervening spacer. For the specimen sequences that were obtained only by pyrosequencing, the N spacer was extended to allow alignment of all sequences. The coordinates of the fragments, excluding primers, numbered according to the Felis silvestris mtDNA reference sequence (NC001700) are: Frag_7: 12918-12961; Frag_2: 13052-13102; Frag_8: 13263-13333; Frag_3: 13513-13569; Frag_4: 13746-13807; Frag_1: 13945-13980; Frag_5: 14004-14012; Frag_9: 14170-14228; Frag_6: 15071-15131.
DOI: 10.5061/dryad.g4p30/2
title: Cat Taqpep gene fragments

description: Three fragments allowing genotyping of the T139, D228 and W841 codons of the Taqpep genes controlling the Macquerel or Blotched Tabby coat color pattern were concatenated for each specimen using a 10 N intervening spacer. The coordinates of the fragments, excluding primers, numbered according to the Felis silvestris Taqpep gene (LOC101101437) from the genomic sequence NC018723 are: T139: 21887-21926; D228: 22154-22180; W841: 80673-80731.
DOI: 10.5061/dryad.g780k/2
title: Data Table 1 (CSV)

description: Surface area of fifth coxal gill and dry body mass of 240 individual amphipods (Gammarus minus) collected from eight freshwater spring populations.
DOI: 10.5061/dryad.h5g60/1
title: contigs from Clitarchus hookeri

description: A fasta file listing the longest contigs from Clitarchus hookeri used in the analysis.
DOI: 10.5061/dryad.h5g60/2
title: contigs from Acanthoxyla geisovii

description: A fasta file listing the longest contigs from Acanthoxyla geisovii used in the analysis.
DOI: 10.5061/dryad.k7t20/2
title: longestReadsMFT

description: Male and female reproductive tissues de novo transcriptome. Longest transcript for each component selected.
DOI: 10.5061/dryad.k7t20/3
title: longestReadsRCL

description: Female head tissue de novo transcriptome. Longest transcript for each component selected.
DOI: 10.5061/dryad.n81g1/1
title: Trait, fitness, and pollinator data for three Asclepias spp.

description: This file contains the three Asclepias species (A. syriaca, A. tuberosa, and A. viridiflora), plant IDs, raw trait measurements, relative traits (using geometric mean), display size, measures of pollination success (pollinaria removed per flower and pollinia inserted per flower), female reproductive success (fruit quantity), standardized traits and display size (subset by either pollination success "remins-" or reproductive success "fruit-), and the number of pollinator visits and duration of stays per 10 minutes (from video). Data may be used to calculate selection gradients, compare traits across species, and relate traits to pollinator visitation, among other things.
DOI: 10.5061/dryad.nv1fd/1
title: Foraging data for individual wasps

description: Each individual female wasp is indicated by a unique “Wasp ID”. Because each nest is made up of multiple cells, each prey item is labeled with a “Cell number”. These cell numbers do not indicate anything about the age of the nest cell or the order of nest provisioning (see Methods in Powell and Taylor 2017). 
The Excel file includes three sheets. The first sheet includes data from one randomly-selected nest cell from each wasp in the study (with each cell containing between 5 and 22 prey items). The second sheet includes data for a second analysis conducted on the individual wasps that had at least three intact cells in their nest. If a wasp nest contained more than three cells, only three cells were selected (at random) for inclusion. Because only three nest cells were analyzed from each wasp in our study, data from additional cells (unanalyzed cells) are listed in the third sheet, “Unanalyzed cells”. 
Missing data (i.e., blank spaces in the data sheet) indicate that spider prey were unable to be measured or identified to the genus level. This occurred for one of two reasons. Most commonly, this was because the specimen was partially eaten by the feeding wasp larva. Alternatively, some juvenile specimens were unable to be identified to the genus level because they lacked the mature genitalia needed for accurate identification. All specimens from this study are deposited in the Florida State Collection of Arthropods (Gainesville, FL.) Please contact Erin Powell (epow209@aucklanduni.ac.nz), for more information regarding specific analyses discussed in the corresponding manuscript.
DOI: 10.5061/dryad.pr7gh/1
title: DryadRepository_PraveenLD

description: "map" and "ped" files in PLINK format
DOI: 10.5061/dryad.ps657/1
title: LocalVariables

description: Description of local variables of study sites collected in the field. Column headings A-K: A: Study site number; B: ground or roof site; C: age of vegetation at site; D: height of site; E: area of study site; F: substrate depth in cm; G: type of substrate; H: proportion of bare ground; I: proportion of sedum plants; J: number of plant species; K: abundance of flowering plants
DOI: 10.5061/dryad.ps657/2
title: SpeciesTraits

description: Species traits collected from sources mentioned in the publication.
DOI: 10.5061/dryad.ps657/3
title: ConnectivityVariables

description: Files containing connectivity measures for different binary landscape matrix (brown, non-vertical, urbangreen, vegebrown) at 4 different scales (100, 200, 300 and 400m radius). In each file 3 connectivity measures for each site are listed. Column headings: nr_final = number of site; CWED = edge density; MPI =mean proximity; MNN = mean nearest neighbour distance.
DOI: 10.5061/dryad.ps657/4
title: SpeciesAbundance

description: Species abundance tables for the four investigated species. First column gives the site number, the following columns gives the number of individuals of the respective species (column heading) captured at each site.
DOI: 10.5061/dryad.q82kn/3
title: metadata file key

description: Key to metadata file describing samples in this study.
DOI: 10.5061/dryad.q82kn/4
title: raw data files

description: Raw 454 data files (.sff format). Data are already demultiplexed, with one file for each sample in study, as described in the accompanying metadata file.
DOI: 10.5061/dryad.r6d8h/1
title: Microsatellite profiles for the Melampsora larici-populina individuals analyzed in Persoons et al. MEC16-1416

description: Genotypes at 25 microsatellite markers for 594 individuals of Melampsora larici-populina sampled in France and Belgium from 1982 to 2011. Columns labels are detailed in the Read Me file
DOI: 10.5061/dryad.r6d8h/2
title: Virulence profiles of Melampsora larici-populina in France from 1992 to 2011

description: Virulence types of Melampsora larici-populina sampled in France from 1992 to 2011. Isolates were inoculated on a differential set of eight poplar cultivars, each bearing a single qualitative resistance, to determine which virulence type(s) they possessed. In total 6494 isolates from 44 samples have been phenotyped. Columns labels are detailed in the Read Me file
DOI: 10.5061/dryad.td3sj/1
title: Bierbach et al clonal molly behav development_data for deposit
DOI: 10.5061/dryad.1pm64/1
title: Raw data table for Calcagno et al. 2016 article

description: Each row in an artificial stacks. Cells contain counts of individuals (larvae and pupae, separately)
DOI: 10.5061/dryad.27fb8/1
title: Microsat.Data

description: Raw-microsatellite-data-file
DOI: 10.5061/dryad.27fb8/2
title: 2011-2015 Jersey Shipping Data
DOI: 10.5061/dryad.2s4g5/1
title: Tolonen et al.  2016 OIK-03587 coordinates, environmental variables and diversity indices

description: Data used in the paper published in Oikos "Tolonen et al. Ignoring spatial effects results in inadequate models for variation in littoral macroinvertebrate diversity. DOI: 10.1111/oik.03587." including geographic coordinates of the sampling sites, environmental variable measurements and diversity indices at each sampling site.
DOI: 10.5061/dryad.36g21/3
title: Supplementary Information: BAMM Assessment
DOI: 10.5061/dryad.54c43/1
title: Total_read_counts

description: RNA-seq aligned read counts for marine and freshwater stickleback acclimated to salinities of 0 ppt or 30 ppt.
DOI: 10.5061/dryad.58ff4/1
title: All females breeding success

description: Year and site of breeding recommendation; dam age, origin (C = captive-born, W = wild-born), generation, inbreeding coefficient (F); management (I = intensive site, F = free-range site) and breeding success (1 = successfully produced offspring, 0 = did not produce offspring) for all females included in the analysis of breeding success.
DOI: 10.5061/dryad.58ff4/2
title: All females litter size

description: Year and site of breeding recommendation; dam age, origin (C = captive-born, W = wild-born), generation, inbreeding coefficient (F); management (I = intensive site, F = free-range site); and litter size coded as a two-column matrix of successes (no. offspring produced) and failures (4 – successes, see Methods) for all females included in the analysis of litter size.
DOI: 10.5061/dryad.58ff4/3
title: Intensive pairs breeding success

description: Year and site of breeding recommendation; age, origin (C = captive-born, W = wild-born), generation, and inbreeding coefficient (F) of the sire and dam; number of years since the site first held the species and number of holdings of devils at the site in the year of the breeding recommendation; breeding success (1 = successfully producing offspring, 0 = did not produce offspring) for pairs housed at intensive sites.
DOI: 10.5061/dryad.58ff4/4
title: Intensive pairs litter size

description: Year and site of breeding recommendation; age, origin (C = captive-born, W = wild-born), generation, and inbreeding coefficient (F) of the sire and dam; number of years since the site first held the species and number of holdings of devils at the site in the year of the breeding recommendation; and litter size coded as a two-column matrix of successes (no. offspring produced) and failures (4 - successes, see Methods) for pairs housed at intensive sites.
DOI: 10.5061/dryad.719bt/1
title: Calorespirometry raw data files

description: Excel files of raw data from closed-chamber and flow-through calorespirometry experiments.
DOI: 10.5061/dryad.7f8d5/1
title: Data from: Bacteriocins and the assembly of natural Pseudomonas fluorescent populations

description: The data in this file feature in the paper "Bacteriocins and the assembly of natural Pseudomonas fluorescens populations", by John Bruce, Stuart West and Ashleigh Griffin. The xls file comprises two sheets, namely 'data' and 'Size Fractions', comprising data from figures 2, 3, 4 and 5; and figure 1, respectively. Description of the variables are provided in the spreadsheet.
DOI: 10.5061/dryad.7ns5c/10
title: Mexico-City-AM-signals

description: Admixture Mapping signals identified in both Mexico City samples for all the lipid traits.
DOI: 10.5061/dryad.7ns5c/4
title: MC-sample1-TG-AM

description: Admixture Mapping results for triglycerides: Mexico City sample 1
DOI: 10.5061/dryad.7ns5c/5
title: MC-sample2-HDL-AM

description: Admixture Mapping results for HDL-cholesterol: Mexico City sample 2
DOI: 10.5061/dryad.7ns5c/6
title: MC-sample2-LDL-AM

description: Admixture Mapping results for LDL-cholesterol: Mexico City sample 2
DOI: 10.5061/dryad.7ns5c/7
title: MC-sample2-TCHOL-AM

description: Admixture Mapping results for Total-cholesterol: Mexico City sample 2
DOI: 10.5061/dryad.7ns5c/8
title: MC-sample2-TG-AM

description: Admixture Mapping results for triglycerides: Mexico City sample 2
DOI: 10.5061/dryad.7rn79/1
title: Data_&_DOE_analysis_code

description: The archive (.zip) includes the cleaned flow-cytometry data, the final summary table used for the analysis of the experiment and the SPSS code for the GLM.
DOI: 10.5061/dryad.80r64/1
title: IndividualConsistencyRepeatabilityFile1

description: This file contains the information for the repeatability analyses and calculations of within-individual and between-individual means, variance, SD and distances. In the excel file, 'Sheet 1' contains data, and the 'info' sheet contains explanations for the column headings of the data sheet.
DOI: 10.5061/dryad.80r64/2
title: IndividualConsistencyMapsDataFile2

description: This file contains the basic information underlying the maps of migration stopovers, routes and wintering sites (spatial and temporal parameters). In the excel file, ‘Sheet 1’ contains data, and the ‘info’ sheet contains explanations for the column headings of the data sheet.
DOI: 10.5061/dryad.8467g/16
title: PBSO

description: R code and instructions to run the model on the data provided
DOI: 10.5061/dryad.8467g/2
title: evaporation_january

description: A spatial layer of the evaporation in January in the study area used for analysing of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/3
title: evaporation_july

description: A spatial layer of evaporation in July in the study area used for analysing of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/4
title: log_vertical_distance_major_streams

description: A spatial layer of the distance to the nearest stream in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/5
title: MaxTemp_Jan

description: A spatial layer of the maximum temperature in January in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/6
title: MinTemp_Jul

description: A spatial layer of the minimum temperature in July in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/7
title: RainDays_Jan

description: A spatial layer of the number of rainy days in January in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/8
title: Rainfall_Jul

description: A spatial layer of the average rainfall in January in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI
DOI: 10.5061/dryad.8467g/9
title: RainDays_Jul

description: A spatial layer of the average number of rainy days in January in the study area used in the analysis of yellow-bellied glider data. Description of all the covariates can be found in chapter 4 of the SI