cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5445/ir/1000129603
title: Reproduction Package for the Dissertation on Building Transformation Networks for Consistent Evolution of Interrelated Models

description: This repository provides different artifacts developed in and used for the evaluation of the dissertation "Building Transformation Networks for Consistent Evolution of Interrelated Models". It serves as a reproduction package for the contributions and evaluations of that thesis. The artifacts comprise an approach to evaluate compatibility of QVT-R transformations, evaluations of interoperability issues in transformation networks and approaches to avoid them, a language to define consistency between multiple models, and an evaluation of this language. The package contains a prepared execution environment for the different artifacts. In addition, it provides a script to run the environment for some of the artifacts and automatically resolve all dependencies based on Docker.
DOI: 10.5445/ir/1000133796
title: Reproduction Package for the Paper on Classifying and Avoiding Compatibility Issues in Networks of Bidirectional Transformations

description: This repository provides different artifacts developed in and used for the evaluation presented in the paper "Classifying and Avoiding Compatibility Issues in Networks of Bidirectional Transformations" by Sağlam and Klare at the Ninth International Workshop on Bidirectional Transformations. The artifacts comprise a Git repository whose history documents the case study conduction presented in the paper, as well as the developed transformation network with the test scenarios of the case study. The package contains a prepared execution environment and provides a script to run the environment for the tests scenarios and automatically resolve all dependencies based on Docker.
DOI: 10.6084/m9.figshare.14869317
title: Landry et al_Mitigation potential of ecosystem-based forest management

description: Dataset for the article: Mitigation potential of ecosystem-based forest management under climate change: A case study in the boreal-temperate forest ecotone. Accepted in Forests (MDPI)<b></b>
DOI: 10.6084/m9.figshare.14869317.v1
title: Landry et al_Mitigation potential of ecosystem-based forest management

description: Dataset for the article: Mitigation potential of ecosystem-based forest management under climate change: A case study in the boreal-temperate forest ecotone. Accepted in Forests (MDPI)<b></b>
DOI: 10.5281/zenodo.5729781
title: S-LCA - Datasets for PlastiCircle Social Evaluation of the Light Packaging Waste Management (stakeholder perpectives)

description: This deliverable (7.5) presents S-LCA results for the waste management systems in Valencia (Spain), Utrecht (Netherland) and Alba Iulia (Romania). Moreover, an extrapolation of the results has been calculated to show the results on the European level. Data is collected from groups of citizens, citizens associations, waste managers and municipalities (city hall workers). Questionnaires have been done in order to ask this groups of people questions to assess the social impact of the waste management systems in each city. Questions have been prepared according to the guidelines for social life cycle assessment of products - UNEP DTIE.
DOI: 10.5281/zenodo.5729780
title: S-LCA - Datasets for PlastiCircle Social Evaluation of the Light Packaging Waste Management (stakeholder perpectives)

description: This deliverable (7.5) presents S-LCA results for the waste management systems in Valencia (Spain), Utrecht (Netherland) and Alba Iulia (Romania). Moreover, an extrapolation of the results has been calculated to show the results on the European level. Data is collected from groups of citizens, citizens associations, waste managers and municipalities (city hall workers). Questionnaires have been done in order to ask this groups of people questions to assess the social impact of the waste management systems in each city. Questions have been prepared according to the guidelines for social life cycle assessment of products - UNEP DTIE.
DOI: 10.15468/buv2h8
title: A new species and new distributional records of Haroldius Boucomont, 1914 (Coleoptera: Scarabaeidae: Scarabaeinae) from southern Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Daniel, Gimo M., Strümpher, Werner P., Snäll, Stanislav (2021): A new species and new distributional records of Haroldius Boucomont, 1914 (Coleoptera: Scarabaeidae: Scarabaeinae) from southern Africa. Zootaxa 5072 (1): 34-42, DOI: https://doi.org/10.11646/zootaxa.5072.1.4
DOI: 10.6084/m9.figshare.16992058.v1
title: C. elegans PEZO-1 is a Mechanosensitive Ion Channel Involved in Food SensationUntitled Item

description: Data set for paper
DOI: 10.6084/m9.figshare.16992058
title: C. elegans PEZO-1 is a Mechanosensitive Ion Channel Involved in Food Sensation

description: Data set for paper
DOI: 10.6084/m9.figshare.16992058.v3
title: C. elegans PEZO-1 is a Mechanosensitive Ion Channel Involved in Food Sensation

description: Data set for paper
DOI: 10.6084/m9.figshare.16992058.v2
title: C. elegans PEZO-1 is a Mechanosensitive Ion Channel Involved in Food SensationUntitled Item

description: Data set for paper
DOI: 10.6084/m9.figshare.16695262.v1
title: ViralFlow: an automated workflow for SARS-CoV-2 genome assembly, lineage assignment, mutations and intrahost variants detection

description: The COVID-19 pandemic, a disease caused by the Severe Acute Respiratory Syndrome coronavirus 2 (SARS-CoV-2), emerged in 2019 and quickly spread worldwide. Genomic surveillance has become the gold standard methodology to monitor and study this emerging virus. The current deluge of SARS-CoV-2 genomic data being generated worldwide has put additional pressure on the urgent need for streamlined bioinformatics workflows for data analysis. Here, we describe a workflow developed by our group to process and analyze large-scale SARS-CoV-2 Illumina amplicon sequencing data. This workflow automates all the steps involved in SARS-CoV-2 genomic analysis: data processing, genome assembly, PANGO lineage assignment, mutation analysis and the screening of intrahost variants. The workflow presented here (https://github.com/dezordi/ViralFlow) is available through Docker or Singularity images, allowing implementation in laptops for small scale analyses or in high processing capacity servers or clusters. Moreover, the low requirements for memory and CPU cores makes it a versatile tool for SARS-CoV-2 genomic analysis.
DOI: 10.17903/fk2/qfbzow
title: Museum of the City of Athens: Culture in the service of communication with the past and present

description: The Museum of the City of Athens is being studied as a case of a museum that presents the modern history of the capital and as a cultural pole it can favor the link with the historical past on the one hand and the communication between the citizens in the modern city of Athens on the other. The case study of this Museum is presented through the results of a survey of visitors' attitudes held for six months in this.
DOI: 10.15468/eus55f
title: Parasitylenchus myiophagus n. sp. (Nematoda: Parasitylenchidae), a tylenchid nematode parasite of long-legged flies (Diptera: Dolichopodidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Poinar, George, Runyon, Justin B. (2021): Parasitylenchus myiophagus n. sp. (Nematoda: Parasitylenchidae), a tylenchid nematode parasite of long-legged flies (Diptera: Dolichopodidae). Zootaxa 5072 (1): 43-52, DOI: https://doi.org/10.11646/zootaxa.5072.1.5
DOI: 10.5281/zenodo.5729881
title: msd-errors - Data for scaling figures2

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729882
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729889
title: msd-errors - Data for scaling figures

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.34934/dvn/u0vfyh
title: BESOCIAL: Social media archiving tools comparison

description: This spreadsheet has the aim to provide an overview about tools and frameworks for social media archiving, as a variety of open source tools implemented in different programming languages and with different features exist. It is an adapted version of the "Comparison of web archiving software" by the Data Together Initiative which is licensed under CC BY 4.0: https://github.com/datatogether/research/tree/master/web_archiving. We kept the table structure with its clear column definitions and added new columns, these definitions can be found in the column definitions sheet; some columns do not apply or are not our main focus and thus we kept them empty for now. The observations sheet contains a description of each tool which also served as basis for several column values in the comparison sheet. Initially we focus on tools which are dedicated social media harvesting tools. Please note that general web archiving tools such as listed in the table of the Data Together initiative may be used to harvest social media data too. However, these tools might require a specific setup to cope with the peculiarities of social media data, hence we initially did not include these tools. Contributions and feedback are welcome and we also envision to contribute results back to the Data Together initiative. This spreadsheet is part of work package 1 of the BeSocial project, the conducted research has been funded by BELSPO, the Belgian Science Policy office. Contact information: — For BeSocial in general: Fien Messens from KBR fien.messens@kbr.be — For the tool comparison: Sven Lieber from Ghent University - IDLab sven.lieber@ugent.be
DOI: 10.34934/dvn/rmkyko
title: BESOCIAL: Interview / Survey results WP1

description: This document is part of the PROMISE project (2017-2019) financed by the Belgian Science Policy Office (Belspo) as part of the BRAIN.be programme and is coordinated by KBR. The State Archives, the universities of Ghent (Research Group for Media, Innovation and Communication Technologies; Ghent Centre for Digital Humanities) and Namur (Research Centre in Information, Law and Society) and the university college Bruxelles-Brabant (Unité de Recherche et de Formation en Sciences de l’Information et de la Documentation) are partners in the project. In the scope of this project, a state-of-the-art report was written based on interviews via mail and Skype with several organizations from different countries. The information in this spreadsheet is a summary of the data collected during this task. A list of all the organisations involved can be found in tab "Annex - List of countries and organizations". In 2020, a new project called BESOCIAL (towards a sustainable social media archiving strategy for Belgium) started in which an updated state-of-the-art report will be written with a focus on archiving social media. Again, the different organizations are surveyed and the data in this spreadsheet is being updated and enhanced.
DOI: 10.15468/r5h42b
title: Revised lectotypification of Teucrium gnaphalodes L’Hér. (Lamiaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ferrer-Gallego, Pablo, Roselló, Roberto, Gómez, José, Peris, Juan B. (2012): Revised lectotypification of Teucrium gnaphalodes L’Hér. (Lamiaceae). Candollea 67 (1): 37-40, DOI: 10.15553/c2012v671a4
DOI: 10.15468/kftmye
title: First record of the genus Lodosocoris Ahmad & Afzal (Hemiptera: Heteroptera Pentatomidae: Halyini) from India with description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article S, Salini, K, Rabbani M., U, Amala, G, Mahendiran (2021): First record of the genus Lodosocoris Ahmad & Afzal (Hemiptera: Heteroptera Pentatomidae: Halyini) from India with description of a new species. Zootaxa 5072 (1): 53-62, DOI: 10.11646/zootaxa.5072.1.6
DOI: 10.6084/m9.figshare.17086334
title: Link to raw data collected

description: My mission is to equip young Liberians from online and training with the right leadership skill(s) needed to drive the change in the public and private sector of Liberia by 2024.<br>
DOI: 10.6084/m9.figshare.17086334.v1
title: Link to raw data collected

description: My mission is to equip young Liberians from online and training with the right leadership skill(s) needed to drive the change in the public and private sector of Liberia by 2024.<br>
DOI: 10.5281/zenodo.5729863
title: Illumina TruSeq stranded mRNA sequences of Rhynchosporium commune isolate UK7 in vitro

description: Transcription profiles were generated from the <em>Rhynchosporium commune</em> isolate UK7. Cultures were grown either on Luria-Bertani (LBA) or Potato Dextrose Broth (PDB) media. Total RNA was extracted using TRIzol (Invitrogen Inc.) following the manufacturer’s recommendations. Experiments were conducted in triplicates. RNA integrity and quantity was assessed on a Bioanalyzer 2100 (Agilent) and a Qubit fluorometer (Life Technologies) and a Bioanalyzer 2100. Libraries were prepared using the TruSeq stranded mRNA sample prep kit (Illumina Inc.). Total RNA was ribosome-depleted by using polyA selection and reverse-transcribed into double-stranded cDNA.
DOI: 10.5281/zenodo.5729862
title: Illumina TruSeq stranded mRNA sequences of Rhynchosporium commune isolate UK7 in vitro

description: Transcription profiles were generated from the <em>Rhynchosporium commune</em> isolate UK7. Cultures were grown either on Luria-Bertani (LBA) or Potato Dextrose Broth (PDB) media. Total RNA was extracted using TRIzol (Invitrogen Inc.) following the manufacturer’s recommendations. Experiments were conducted in triplicates. RNA integrity and quantity was assessed on a Bioanalyzer 2100 (Agilent) and a Qubit fluorometer (Life Technologies) and a Bioanalyzer 2100. Libraries were prepared using the TruSeq stranded mRNA sample prep kit (Illumina Inc.). Total RNA was ribosome-depleted by using polyA selection and reverse-transcribed into double-stranded cDNA.
DOI: 10.5281/zenodo.5729962
title: msd-errors - Data for scaling figures

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.15468/uqvu9a
title: Two new species and one new record species of genus Arrenurus Dugès, 1834 (Acari, Hydrachnidia, Arrenuridae) from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zheng, Yulin, Gu, Xinyao, Guo, Jianjun, Zhang, Runzhi (2021): Two new species and one new record species of genus Arrenurus Dugès, 1834 (Acari, Hydrachnidia, Arrenuridae) from China. Zootaxa 5072 (1): 63-72, DOI: https://doi.org/10.11646/zootaxa.5072.1.7
DOI: 10.5517/ccdc.csd.cc2528k3
title: CCDC 1998184: Experimental Crystal Structure Determination

description: Related Article: Alaa A. Hassan, Stefan Bräse, Ashraf A. Aly, Nasr K. Mohamed, Lamiaa E. Abd El-Haleem, Martin Nieger|2021|Monatsh.Chem.|152|1571|doi:10.1007/s00706-021-02853-0
DOI: 10.5517/ccdc.csd.cc2528l4
title: CCDC 1998185: Experimental Crystal Structure Determination

description: Related Article: Alaa A. Hassan, Stefan Bräse, Ashraf A. Aly, Nasr K. Mohamed, Lamiaa E. Abd El-Haleem, Martin Nieger|2021|Monatsh.Chem.|152|1571|doi:10.1007/s00706-021-02853-0
DOI: 10.5517/ccdc.csd.cc26s8gr
title: CCDC 2049114: Experimental Crystal Structure Determination

description: Related Article: Teng-Fei Xiao, Yi-Fan Zhang, Wen-Tao Hou, Pen-Ji Yan, Jun Hai, Peng-Fei Xu, Guo-Qiang Xu|2021|Org.Lett.|23|8942|doi:10.1021/acs.orglett.1c03431
DOI: 10.5281/zenodo.5729965
title: msd-errors - Data for scaling figures2

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729880
title: msd-errors - Data for scaling figures2

description: Data for a figure that shows the scaling of uncertainty as a function of simulation length and number of atoms and step size, for both true and anitcorrelated random walks. This compares the kinisi approach (on just 32 unique walks) with the numerical values from (1024 unique walks). <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729975
title: msd-errors - Data for the LLZO figure

description: Data for the figure showing the diffusion and Arrhenius plots for a short simulation of LLZO. <br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729976
title: msd-errors - Data for variance and covariance figure

description: Data for a figure that presents the variance and covariance for a true random walk. There is a comparison shown between the numerical result from 1024 unique random walks and the analysis, by kinisi, of the same 1024 random walks.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.5281/zenodo.5729977
title: msd-errors - Data for AgCrSe2 figures

description: Data for the figures Results of the analysis of AgCrSe2 systems by kinisi at a series of temperatures.<br><br>Created using showyourwork from this GitHub repo.
DOI: 10.25828/b9a8-yv68
title: Open Educational Resources in SA 2015
DOI: 10.5519/qd.xzz3wtut
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (920368 records)
DOI: 10.6084/m9.figshare.17086376.v1
title: Data responses.xlsx

description: The raw data collection are responses from 50 participants
DOI: 10.6084/m9.figshare.17086376
title: Data responses.xlsx

description: The raw data collection are responses from 50 participants
DOI: 10.6084/m9.figshare.17086385
title: Interview Guide

description: interview guide are the questions participants responded to on mental health information seeking behaviour
DOI: 10.6084/m9.figshare.12961955
title: Supplementary Figure 3 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: Raw image data in ome.tiff format, supporting Supplementary Figure 3 of the manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.<br>Furthermore the numerical data and analysis parameters supporting the plots in panel 3c, d and e and in Figure 5a are given. The .opju analysis data file can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).
DOI: 10.6084/m9.figshare.12961955.v4
title: Supplementary Figure 3 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: Raw image data in ome.tiff format, supporting Supplementary Figure 3 of the manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.<br>Furthermore the numerical data and analysis parameters supporting the plots in panel 3c, d and e and in Figure 5a are given. The .opju analysis data file can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).
DOI: 10.6084/m9.figshare.12961955.v3
title: Supplementary Figure 3 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: Raw image data in ome.tiff format, supporting Supplementary Figure 3 of the manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.<br>Furthermore the numerical data and analysis parameters supporting the plots in panel 3c, d and e and in Figure 5a are given. The .opju analysis data file can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).
DOI: 10.5281/zenodo.5729968
title: Illumina TruSeq stranded mRNA sequences of Rhynchosporium commune isolate UK7 in plantae

description: Transcription profiles were generated from the <em>Rhynchosporium commune</em> isolate UK7. RNA-seq experiments were conducted <em>in plantae</em> on the barley cultivar Beatrix (Viskosa 9 Pasadena, Saaten Union, breeders’ Reference NS01/2449). Leaves were collected at 9 and at 13 days post infection (dpi). All experiments were conducted in triplicates. Total RNA was extracted using TRIzol (Invitrogen Inc.) following the manufacturer’s recommendations. RNA integrity and quantity was assessed on a Bioanalyzer 2100 (Agilent) and a Qubit fluorometer (Life Technologies) and a Bioanalyzer 2100. Libraries were prepared using the TruSeq stranded mRNA sample prep kit (Illumina Inc.). Total RNA was ribosome-depleted by using polyA selection and reverse-transcribed into double-stranded cDNA.
DOI: 10.5281/zenodo.5729967
title: Illumina TruSeq stranded mRNA sequences of Rhynchosporium commune isolate UK7 in plantae

description: Transcription profiles were generated from the <em>Rhynchosporium commune</em> isolate UK7. RNA-seq experiments were conducted <em>in plantae</em> on the barley cultivar Beatrix (Viskosa 9 Pasadena, Saaten Union, breeders’ Reference NS01/2449). Leaves were collected at 9 and at 13 days post infection (dpi). All experiments were conducted in triplicates. Total RNA was extracted using TRIzol (Invitrogen Inc.) following the manufacturer’s recommendations. RNA integrity and quantity was assessed on a Bioanalyzer 2100 (Agilent) and a Qubit fluorometer (Life Technologies) and a Bioanalyzer 2100. Libraries were prepared using the TruSeq stranded mRNA sample prep kit (Illumina Inc.). Total RNA was ribosome-depleted by using polyA selection and reverse-transcribed into double-stranded cDNA.
DOI: 10.6084/m9.figshare.12961829.v3
title: Figure 3, 4 and 5 data supporting manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.

description: Raw image data in ome.tiff format, supporting Figure 3, 4 and 5a of the manuscript Intravital Deep-Tumor Single-Beam 3-Photon, 4-Photon and Harmonic Microscopy.<br>Furthermore, a Matlab analysis script for panel 3d, the numerical data and analysis parameters supporting the plots in panel 3c-e, 4b, 4d, 4e, 5a and Supplementary figure panel 2b are given. The .opju analysis data file can be opened with OriginPro2020, or with the freely distributed Origin viewer (https://www.originlab.com/viewer/).