cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28279733
title: Additional file 2 of Dissecting the genetic basis of fruiting efficiency for genetic enhancement of harvest index, grain number, and yield in wheat

description: Additional File 2: Table S1 Summary of ANOVA results testing the effects of genotype (G), environment (E), and genotype-by-environment interaction (G×E) in phenotypic traits evaluated in combined analysis of experiment I. The table includes mean square values and significance level of each term. Table S2 Summary of ANOVA results testing the effects of genotype (G), environment (E), and genotype-by-environment interaction (G×E) in phenotypic traits evaluated in combined analysis of experiment II. The table includes mean square values and significance level of each term. Table S3 Direct and indirect effects of different traits on fruiting efficiency (FE) identified through path coefficient analysis (Experiment II). Table S4 Summary of all significant markers and their functional annotations associated with two traits. Table S5 Information on genes at proximity to significant SNPs for phenotypic traits. Table S6 Significant KASP markers detected in validation study (previously identified by an association mapping study). Table S7 Weather table showing Tave (monthly average temperature) and Ppt (monthly precipitation in mm). Association mapping panel was planted two seasons in Citra (2017/ 2018) and Quincy (2016/2017, 2017/2018).
DOI: 10.6084/m9.figshare.28279738
title: Additional file 2 of The cell colony development is connected with the accumulation of embryogenesis-related proteins and dynamic distribution of cell wall components in in vitro cultures of Fagopyrum tataricum and Fagopyrum esculentum

description: Supplementary Material 2: Supplementary table S2: The statistical analysis of proteomic data.
DOI: 10.6084/m9.figshare.28279790
title: Additional file 2 of Spatial transcriptome reveals histology-correlated immune signature learnt by deep learning attention mechanism on H&E-stained images for ovarian cancer prognosis

description: Additional file 2. Table S1. TCGA images metadata for the 5-fold cross-validation process, training, and testing
DOI: 10.6084/m9.figshare.28279856
title: Supplementary Material for: Validation of a New Classification for Severe Bronchopulmonary Dysplasia in Extremely Preterm Infants: Insights from a Large Japanese Cohort

description: Introduction: A recent scoping review identified histological chorioamnionitis (HCA), small for gestational age (SGA), and bubbly/cystic appearance on chest X-ray (bubbly/cystic CXR) as risk factors for severe bronchopulmonary dysplasia (BPD). To further validate these results, a large-scale database was analyzed.
Methods: This retrospective multicenter cohort study included infants born at &lt;28 weeks' gestational age between 2003 and 2016. The validated risk factors identified from the scoping review were analyzed for independent associations with severe BPD using multivariable logistic regression. Additionally, the association of these factors with long-term outcomes at 3 years, including home oxygen therapy (HOT) and neurodevelopmental impairments (NDIs), were analyzed.
Results: Among 15,834 extremely preterm infants, HCA, SGA, and bubbly/cystic CXR on postnatal day 28 were significantly and independently associated with severe BPD (adjusted odds ratio, 1.20; 95% confidence interval, 1.06–1.36) (1.73; 1.51–1.98) (1.79; 1.60–2.01), respectively. These three factors were also linked to HOT at 3 years (1.54; 1.14–2.08) (1.70; 1.21–2.39) (2.63; 1.94–3.56), respectively. Their combination significantly increased the prevalence of severe BPD and HOT at 3 years, particularly with bubbly/cystic CXR. Only SGA was independently associated with NDIs in BPD infants (1.55; 1.32–1.83).
Conclusions: HCA, SGA, and bubbly/cystic CXR on postnatal day 28 were identified as important risk factors for severe BPD and long-term respiratory outcomes. While further research is needed to validate their role in endotype-specific classification of BPD, these findings may contribute to early prognostic strategies and targeted interventions before 36 weeks' postmenstrual age.
DOI: 10.25345/c5125qn51
title: MassIVE MSV000096946 - HDAC8_SAHA_PCI-34051_native_MS_Luo
title: This dataset contains the native MS raw mass spectra data in the article 'Binding mechanism and distant regulation of histone deacetylase 8 by PCI-34051'
DOI: 10.5281/zenodo.14731730
title: Kalidas Nag and the Study in Indian Internationalism
DOI: 10.5281/zenodo.14731731
title: Kalidas Nag and the Study in Indian Internationalism
DOI: 10.5281/zenodo.14736923
title: SV information in the Maize pan-genome work

description: SV information at pan-genome and population level
DOI: 10.5281/zenodo.14736924
title: SV information in the Maize pan-genome work

description: SV information at pan-genome and population level
DOI: 10.15468/dl.wyfdmy
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.2.108_2)",
 "TaxonKey is one of (Platyhelminthes, Arthropoda, Mollusca)"
 ]
 }
 ]
}

 The dataset includes 281 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001743-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eznn97
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.2.108_2)",
 "TaxonKey is one of (Platyhelminthes, Arthropoda, Mollusca)"
 ]
 }
 ]
}

 The dataset includes 281 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001741-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14737221
title: A Monk's Travelogue: Sadanand Swami on India and Southeast Asia Relation; A Nationalist Exploration
DOI: 10.5281/zenodo.14737222
title: A Monk's Travelogue: Sadanand Swami on India and Southeast Asia Relation; A Nationalist Exploration
DOI: 10.6084/m9.figshare.28279877
title: Supplementary Material for: DRESS is not a rare complication during the initial treatment of newly diagnosed multiple myeloma_the experience of two medical institutes

description: Introduction: Drug Reaction with Eosinophilia and Systemic Symptoms (DRESS) is a severe hypersensitivity reaction rarely documented in patients with multiple myeloma (MM). Methods: In our retrospective study of 108 newly diagnosed MM (NDMM) patients from January 2021 to October 2023, we identified four cases of DRESS. The clinical characteristics such as clinical manifestations, laboratory results, treatment and outcome were analyzed. Results: These patients presented with fever, persistent and recurrent, along with a widespread red rash characterized by diffuse erythematous macules or papules accompanied by intense itching, desquamation, and other dermatological manifestations. Multi-organ involvement was common, including hepatic impairment, acute kidney injury, and type I respiratory failure, alongside pleural effusion and multiple lymphadenopathy. Laboratory findings revealed elevated eosinophil counts, often exceeding 1.5 × 10^9/L, abnormal liver function tests, acute kidney injury, and inflammatory markers. Anti-MM treatment was promptly suspended, and all patients received corticosteroid therapy. Outcomes varied, with one patient succumbing to myeloma progression, another to multi-organ failure, while the remaining two patients survived. Conclusion: In NDMM patients undergoing induction therapy, occurrences of DRESS are infrequent but noteworthy, with an incidence higher than observed in the general population. It presents with significant morbidity and mortality, highlighting the crucial need for early recognition and management.
DOI: 10.6084/m9.figshare.28279877.v1
title: Supplementary Material for: DRESS is not a rare complication during the initial treatment of newly diagnosed multiple myeloma_the experience of two medical institutes

description: Introduction: Drug Reaction with Eosinophilia and Systemic Symptoms (DRESS) is a severe hypersensitivity reaction rarely documented in patients with multiple myeloma (MM). Methods: In our retrospective study of 108 newly diagnosed MM (NDMM) patients from January 2021 to October 2023, we identified four cases of DRESS. The clinical characteristics such as clinical manifestations, laboratory results, treatment and outcome were analyzed. Results: These patients presented with fever, persistent and recurrent, along with a widespread red rash characterized by diffuse erythematous macules or papules accompanied by intense itching, desquamation, and other dermatological manifestations. Multi-organ involvement was common, including hepatic impairment, acute kidney injury, and type I respiratory failure, alongside pleural effusion and multiple lymphadenopathy. Laboratory findings revealed elevated eosinophil counts, often exceeding 1.5 × 10^9/L, abnormal liver function tests, acute kidney injury, and inflammatory markers. Anti-MM treatment was promptly suspended, and all patients received corticosteroid therapy. Outcomes varied, with one patient succumbing to myeloma progression, another to multi-organ failure, while the remaining two patients survived. Conclusion: In NDMM patients undergoing induction therapy, occurrences of DRESS are infrequent but noteworthy, with an incidence higher than observed in the general population. It presents with significant morbidity and mortality, highlighting the crucial need for early recognition and management.
DOI: 10.15468/dl.5vq746
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "GadmGid is one of (COL.2.108_2)",
 "TaxonKey is one of (Platyhelminthes, Arthropoda, Mollusca)"
 ]
 }
 ]
}

 The dataset includes 281 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001742-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14737246
title: Revisiting Maritime South-East Asian Literature through the Works of Himansu Bhusan Sarkar
DOI: 10.5281/zenodo.14737247
title: Revisiting Maritime South-East Asian Literature through the Works of Himansu Bhusan Sarkar
DOI: 10.25345/c5w95110f
title: MassIVE MSV000096947 - GNPS_Investigating Chagas Disease Tropism_Tolerance_Duodenum
title: DDA LC_MS/MS from the duodenum of mice with or without T. cruzi infection
DOI: 10.15151/esrf-es-1970948008
title: Advanced Photon Source, Sector 21 - The Life Sciences Collaborative Access Team (LS-CAT) - CAT Member Macromolecular Crystallography

description: The Life Sciences Collaborative Access Team (LS-CAT) provides Macromolecular Crystallography support to our CAT members from eight Universities in the USA, including Northwestern University, University of Michigan, Wayne State University, Michigan State University, University Wisconsin, Vanderbilt University, and University of Illinois at Chicago, and also to General Users. With a one-year dark period approaching for the upgrade of the Advanced Photon Source (APS-U), we are seeking beam time for our CAT Member laboratories at ESRF by way of this Block Allocation Group, consisting of a portion of our CAT Member PIs and their laboratory members, in order to keep supporting their research and future funding. LS-CAT is organizing our CAT Members into this BAG Proposal, and other proposals we will submit, in order to streamline the process for our CAT Members, and for the Staff of Lightsources to which we are applying for access to beam time.
DOI: 10.15151/esrf-es-1975502239
title: Macromolecular Crystallography in Lyon/Toulouse/Bordeaux / IBCP-MMSB ICBMS / IPBS LMGM / IECB IBGC CBMN

description: The different research teams who are part of this BAG are located in Lyon, Toulouse and Bordeaux. They are mainly working on worldwide health concerns
or biotechnological relevant projects. In more details, infectiology, molecular assemblies, biosynthetic pathways or glycobiology are their main research axises.
Important results have been obtained so far regarding the development of new therapeutic strategies against several infectious diseases or regarding plastic
bioremediation. In order to go further into details of all these studies, access to ESRF facilities is a requirement.
DOI: 10.15151/esrf-es-1976132944
title: PROTEINS RELATED TO PATHOGENESIS OF DISEASES, VIRAL PROTEINS, CELL DIVISION, SIGNALLING AND CHROMATIN PROCESSES

description: The outstanding research questions of our BAG focus on proteins and their complexes involved in a variety of processes, ranging from cell homeostasis (from gene regulation to folding quality control, from energy metabolism to signal transduction) to communication and surface recognition (including trans-interactions between cell adhesion molecules, components of the extracellular matrix weaving, as well as antigen-antibody interactions for vaccine development and optimization). Key to several projects is the characterization of the mechanisms associated to enzyme function in various organisms, including bacteria, viruses, plants, animals and humans for downstream drug discovery campaigns. Emphasis is also given to research focusing on engineering protein and enzymes for future industrial applications, as well as to understand the impact of pathogenic mutations on protein structures, providing a genotype-to-molecular phenotype rationale to disease development.
DOI: 10.15151/esrf-es-1861198700
title: Structural investigation of membrane and water-soluble proteins

description: The portfolio of this BAG includes structural investigation of membrane proteins as well as soluble proteins relevant to various scientific fields. These range from basic science to application-related projects with impact on biotechnology (optogenetics, biocatalysts) and medicine (bacterial and viral pathogens, diseases involving protein aggregation).
DOI: 10.15151/esrf-es-1991907547
title: Thin-film Au nucleation layers for anode-free Na-metal batteries via ex-situ GI-PDF/SAXS

description: One of the challenges to advance so called anode-free Na-batteries is the homogenization of Na-metal deposition. Recently, thin alloy-layers are applied onto the current collector to homogenize Na-deposition through their sodiophilicity. However, the detailed structural evolution of the electrochemically Na-alloyed phases is not understood, as the kinetically driven process might give rise to meta-stable phases and/or amorphous intermediate phases - while the properties of these phases will determine the nucleation barrier and smoothness of Na-plating. To determine the structure-activity relationship, we want to resolve the electrochemically induced alloying between Na and a 100 nm thin Au-alloy layer via ex-situ gracing incidence pair distribution function and small angle X-ray scattering experiments. The Au layer can be considered as a model system and the results are expected to impact the understanding on how to design nucleation functional layers for anode-free Na-metal batteries.
DOI: 10.6084/m9.figshare.28279901
title: Supplementary Material for: Inhaled Aviptadil is a New Hope for Recovery of Lung Damage due to COVID-19

description: Objective: We are still in search of new therapeutic options for COVID-19 to prevent new infections, enable fast recovery and reduce the long-lasting symptoms or sequelae. This study aimed to investigate the short- and long-term effects of inhaled aviptadil on hospitalized, adult COVID-19 patients. Methods: A multicenter, prospective, placebo-controlled, comparative, randomized, double-blind clinical trial was conducted. Patients were randomized 1:1 to either inhaled aviptadil or placebo, in addition to the standard care. The primary endpoint is the time from hospitalization to discharge within 30 days of treatment. The secondary endpoints are clinical and radiological score improvements. Results: The study involved 80 patients enrolled from 9 clinical centers. The mean age was 55.8 ± 18.5 years and 27 of them (33.8%) were female. The average time to discharge was 7.8±4.0 days in aviptadil group and 10±5.0 days in placebo (p = 0.049). Modified-Borg Scales were not statistically different on Day 3 (p = 0.090), but significantly lower in the aviptadil group on Day 7 (p = 0.033). The CT lung damage score was not different on Day 1 for both groups (p = 0.962); improvement on Day-28 was significantly greater in the aviptadil group (p = 0.028). The death rate was also lower in the aviptadil group (5.1%) when compared to the placebo (12.2%). There was no drop-out due to side effects. Conclusion: Study shows that inhaled aviptadil is well-tolerated and can be used as a supplementary intervention to fasten the recovery of respiratory manifestations in hospitalized patients for COVID-19 pneumonia.
DOI: 10.6084/m9.figshare.28279901.v1
title: Supplementary Material for: Inhaled Aviptadil is a New Hope for Recovery of Lung Damage due to COVID-19

description: Objective: We are still in search of new therapeutic options for COVID-19 to prevent new infections, enable fast recovery and reduce the long-lasting symptoms or sequelae. This study aimed to investigate the short- and long-term effects of inhaled aviptadil on hospitalized, adult COVID-19 patients. Methods: A multicenter, prospective, placebo-controlled, comparative, randomized, double-blind clinical trial was conducted. Patients were randomized 1:1 to either inhaled aviptadil or placebo, in addition to the standard care. The primary endpoint is the time from hospitalization to discharge within 30 days of treatment. The secondary endpoints are clinical and radiological score improvements. Results: The study involved 80 patients enrolled from 9 clinical centers. The mean age was 55.8 ± 18.5 years and 27 of them (33.8%) were female. The average time to discharge was 7.8±4.0 days in aviptadil group and 10±5.0 days in placebo (p = 0.049). Modified-Borg Scales were not statistically different on Day 3 (p = 0.090), but significantly lower in the aviptadil group on Day 7 (p = 0.033). The CT lung damage score was not different on Day 1 for both groups (p = 0.962); improvement on Day-28 was significantly greater in the aviptadil group (p = 0.028). The death rate was also lower in the aviptadil group (5.1%) when compared to the placebo (12.2%). There was no drop-out due to side effects. Conclusion: Study shows that inhaled aviptadil is well-tolerated and can be used as a supplementary intervention to fasten the recovery of respiratory manifestations in hospitalized patients for COVID-19 pneumonia.
DOI: 10.25345/c5rj4966p
title: MassIVE MSV000096948 - GNPS_Investigating Chagas Disease Tropism_Tolerance_Ileum
title: DDA LC_MS/MS from the Ileum of mice with or without T. cruzi infection
DOI: 10.15468/dl.ax6zev
title: Occurrence Download

description: A dataset containing 6621 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Aphis Linnaeus, 1758"
 ]
}

 The dataset includes 6621 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001744-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmgazk
title: Occurrence Download

description: A dataset containing 150087 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thalassia hemprichii (Ehrenb. ex Solms) Asch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 150087 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001740-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sdgfq
title: Occurrence Download

description: A dataset containing 4453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Echinochloa P.Beauv."
 ]
}

 The dataset includes 4453 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001747-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqm7fs
title: Occurrence Download

description: A dataset containing 732 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Chinese Taipei, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Cyperus rotundus L., Andrographis paniculata (Burm.fil.) Nees, Nanhaia speciosa (Champ. ex Benth.) J.Compton & Schrire)",
 "Year 1980-2020"
 ]
}

 The dataset includes 732 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001748-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28279889
title: Dongliao black pig China Chip-1 porcine SNP50K BeadChip

description: 358 Dongliao black pigs used in this study were raised in TianSheng Co., Ltd. (Shaoxing, Zhejiang, China). All pigs were genotyped using the China Chip-1 porcine SNP50K BeadChip according to the manufacturer’s protocol. A total of 57,466 SNPs were obtained.
DOI: 10.6084/m9.figshare.28279889.v1
title: Dongliao black pig China Chip-1 porcine SNP50K BeadChip

description: 358 Dongliao black pigs used in this study were raised in TianSheng Co., Ltd. (Shaoxing, Zhejiang, China). All pigs were genotyped using the China Chip-1 porcine SNP50K BeadChip according to the manufacturer’s protocol. A total of 57,466 SNPs were obtained.
DOI: 10.15468/dl.5zcae7
title: Occurrence Download

description: A dataset containing 53441 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "GadmGid is USA.4.1_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 1902-2025"
 ]
}

 The dataset includes 53441 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001750-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.