cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p94hduee
title: Paleocene-Eocene foraminifer census data from South Dover Bridge and Mattawoman Creek-Billingsley Road coreholes

description: We include planktic and benthic foraminifer census data tables from the Paleocene-Eocene sections of South Dover Bridge and Mattawoman Creek-Billingsley Road coreholes.
DOI: 10.57778/mcg4-f330
title: Nutrient flux and physical stability drive phytoplankton biomass variability along the Alabama shelf
DOI: 10.5066/p91excvn
title: Proportion of Agricultural Land Cover (18-km scale) in the Wyoming Basins Ecoregional Assessment area

description: Proportion of agricultural land cover within 18-km radius developed using a circular focal moving window analysis.
DOI: 10.5281/zenodo.7708711
title: IODP Expedition 385 Gas safety report

description: This composite report returns data from two different gas chromatograph configurations (GC3 and NGA). Each row combines data from several measurements made on the same sample at the same time for a particular headspace or vacutainer sample. If data do not exist for a particular expedition, the column does not appear. Gas samples were measured by gas chromatography and either flame ionization detection (GC-FID) or thermal conductivity detection (GC-TCD). Reported analytes may include methane, ethane, ethene, propane, propene, n-butane, i-butane, n-pentane, i-pentane, n-hexane, i-hexane, n-heptane, i-heptane, nitrogen, oxygen, carbon monoxide, carbon dioxide, and hydrogen sulfide. When data are available, methane to (ethane + ethene) ratio (C<sub>1</sub>/C<sub>2</sub>�ratio) is reported. To identify individual samples and tests, see each separate analysis (GC3, NGAFID, and/or NGATCD).
DOI: 10.5281/zenodo.7708710
title: IODP Expedition 385 Gas safety report

description: This composite report returns data from two different gas chromatograph configurations (GC3 and NGA). Each row combines data from several measurements made on the same sample at the same time for a particular headspace or vacutainer sample. If data do not exist for a particular expedition, the column does not appear. Gas samples were measured by gas chromatography and either flame ionization detection (GC-FID) or thermal conductivity detection (GC-TCD). Reported analytes may include methane, ethane, ethene, propane, propene, n-butane, i-butane, n-pentane, i-pentane, n-hexane, i-hexane, n-heptane, i-heptane, nitrogen, oxygen, carbon monoxide, carbon dioxide, and hydrogen sulfide. When data are available, methane to (ethane + ethene) ratio (C<sub>1</sub>/C<sub>2</sub>�ratio) is reported. To identify individual samples and tests, see each separate analysis (GC3, NGAFID, and/or NGATCD).
DOI: 10.5281/zenodo.7708621
title: IODP Expedition 385 Ion chromatography

description: Cation and anion concentration in interstitial water samples was measured by ion chromatography using a conductivity detector. Cation analytes include calcium, magnesium, potassium, and sodium. Anion analytes include chloride, sulfate, and bromide.
DOI: 10.5281/zenodo.7708620
title: IODP Expedition 385 Ion chromatography

description: Cation and anion concentration in interstitial water samples was measured by ion chromatography using a conductivity detector. Cation analytes include calcium, magnesium, potassium, and sodium. Anion analytes include chloride, sulfate, and bromide.
DOI: 10.5281/zenodo.7708699
title: IODP Expedition 385 Titration

description: Various chemical constituents (most commonly chloride) were measured by titration using either an autotitrator (chloride) or a manual titrator (other compounds). Chloride was measured by ion-selective electrode and a silver nitrate titration until all chloride is bound as silver chloride.
DOI: 10.5281/zenodo.7708698
title: IODP Expedition 385 Titration

description: Various chemical constituents (most commonly chloride) were measured by titration using either an autotitrator (chloride) or a manual titrator (other compounds). Chloride was measured by ion-selective electrode and a silver nitrate titration until all chloride is bound as silver chloride.
DOI: 10.5281/zenodo.7686399
title: Data for Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in the antibiotic response

description: Data from simulations used to generate the figures in the paper <em>Whole-cell modeling of E. coli colonies enables quantification of single-cell heterogeneity in the antibiotic response</em>. Extracted folder contains the following items: <em>sim_dfs</em>: a folder containing the CSV files that must be moved into the <em>data </em>folder of the <em>vivarium-ecoli</em> repository before using <em>ecoli/analysis/antibiotics_colony/plot.py</em> to generate any figures <em>glc_10000_fluxome.csv</em>: Each row represents a reaction in central carbon metabolism (in same order as listed in <em>validation/ecoli/flat/toya_2010_central_carbon_fluxes.tsv</em>). Each column represents a single time point for a single cell in a baseline glucose simulation (seed 10000). Each value is a flux given in units of mmol/L/hr. Provided as input to <em>ecoli/analysis/centralCarbonMetabolism.py </em>script to reproduce fluxome validation plot. <em>glc_10000_proteome_avgs.csv</em>: Each row represents a protein monomer (in same order as <em>sim_data.translation.monomer_data["id"]</em> where <em>sim_data</em> is <em>reconstruction/sim_data/kb/validationData.cPickle</em>). Each column represents a cell in a baseline glucose simulation (seed 10000). Each row represents a protein monomer. Each value represents the average count of a given protein monomer for a given cell. Provided as input to <em>ecoli/analysis/proteinCountsValidation.py</em> script to reproduce proteome validation plot. <em>glc_10000_expressome.csv</em>: Each column represents a gene (with the exception of the final two metadata columns: "Time" and "Agent ID"). Each row represents a specific cell (agent) at a specific time in a baseline glucose simulation (seed 10000). Each value represents the number of new RNA transcripts for a given gene in a given cell at a given time. Provided as input to <em>data/subgen_gene_plots/generate_plots.py</em> script to calculate number of sub-generational/exponential genes among all genes and antibiotic response genes.
DOI: 10.6084/m9.figshare.21526881
title: input_figS1_F_Hsc70

description: This dataset contains data used to generate panel S1F for Hsc70 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.6084/m9.figshare.21526881.v2
title: input_figS1_F_Hsc70

description: This dataset contains data used to generate panel S1F for Hsc70 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.6084/m9.figshare.21526881.v1
title: input_figS1_D_Hsc70

description: This dataset contains data used to generate panel S1D for Hsc70 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.5281/zenodo.7708697
title: IODP Expedition 385 Vane shear strength (Torvane)

description: Sediment strength was measured on section halves using a Humbolt Manufacturing Torvane handheld instrument. The Torvane is suitable for sediment not affected by cementation (i.e., saturated, clay-rich, soft sediment).
DOI: 10.5281/zenodo.7708696
title: IODP Expedition 385 Vane shear strength (Torvane)

description: Sediment strength was measured on section halves using a Humbolt Manufacturing Torvane handheld instrument. The Torvane is suitable for sediment not affected by cementation (i.e., saturated, clay-rich, soft sediment).
DOI: 10.6084/m9.figshare.21527319
title: input_figS1_F_Hsp40

description: This dataset contains data used to generate panel S1F for Hsp40 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21527319.v2
title: input_figS1_F_Hsp40

description: This dataset contains data used to generate panel S1F for Hsp40 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21527319.v1
title: input_figS1_D_Hsp40

description: This dataset contains data used to generate panel S1D for Hsp40 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.25345/c5vm4370c
title: MassIVE MSV000091437 - Urospatha sagittifolia GCMS IKIAM
title: Metabolomics in plants Urospatha by GCMS for studies volatile metabolites
DOI: 10.6084/m9.figshare.21527874
title: input_figS1_F_Hsp90

description: This dataset contains data used to generate panel S1F for Hsp90 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21527874.v2
title: input_figS1_F_Hsp90

description: This dataset contains data used to generate panel S1F for Hsp90 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.6084/m9.figshare.21527874.v1
title: input_figS1_D_Hsp90

description: This dataset contains data used to generate panel S1D for Hsp90 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295
DOI: 10.5281/zenodo.7708674
title: IODP Expedition 385 Visual core description

description: Descriptions of samples, generally at the section half and smear slide or thin section scale, were performed by shipboard scientists and recorded in the JRSO description software. Descriptive data for both macroscopic and microscopic examination were collected in a Microscoft Excel workbook by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.7708673
title: IODP Expedition 385 Visual core description

description: Descriptions of samples, generally at the section half and smear slide or thin section scale, were performed by shipboard scientists and recorded in the JRSO description software. Descriptive data for both macroscopic and microscopic examination were collected in a Microscoft Excel workbook by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.6084/m9.figshare.21528255
title: input_figS1_F_Hsp110

description: This dataset contains data used to generate panel S1F for Hsp110 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.6084/m9.figshare.21528255.v2
title: input_figS1_F_Hsp110

description: This dataset contains data used to generate panel S1F for Hsp110 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.6084/m9.figshare.21528255.v1
title: input_figS1_D_Hsp110

description: This dataset contains data used to generate panel S1D for Hsp110 in a preprint manuscript from the Misteli Lab at the National Cancer Institute/NIH. Title: Activation of endoplasmic reticulum stress in premature aging via the inner nuclear membrane protein SUN2 Authors: Vidak, Sandra; Serebryannyy, Leonid A.; Pegoraro, Gianluca; Misteli, Tom Link: https://www.biorxiv.org/content/10.1101/2021.09.14.460295v2 DOI: https://doi.org/10.1101/2021.09.14.460295 <br>
DOI: 10.5281/zenodo.7708672
title: IODP Expedition 385 Micropaleontology

description: Paleontological data were collected using microscopes and recorded in the JRSO description software. All data for a species group (e.g., diatoms or nannofossils) were collected in a Microsoft Excel worksheet by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.7708671
title: IODP Expedition 385 Micropaleontology

description: Paleontological data were collected using microscopes and recorded in the JRSO description software. All data for a species group (e.g., diatoms or nannofossils) were collected in a Microsoft Excel worksheet by hole. A zip file of the entire expedition's observations is also available.
DOI: 10.5281/zenodo.7708664
title: IODP Expedition 385 Color reflectance

description: Color reflectance data were measured on section halves using an integration sphere and a UV-VIS spectrophotometer mounted on the Section Half Multisensor Logger (SHMSL). Spectral counts are recorded in the range of 380 to 700 nm, covering the visible spectrum, and binned in ~2 nm bins. Spectral data are reduced from spectra and recorded in tristimulus XYZ values, CieLAB L*a*b* values, and other units.
DOI: 10.5281/zenodo.7708663
title: IODP Expedition 385 Color reflectance

description: Color reflectance data were measured on section halves using an integration sphere and a UV-VIS spectrophotometer mounted on the Section Half Multisensor Logger (SHMSL). Spectral counts are recorded in the range of 380 to 700 nm, covering the visible spectrum, and binned in ~2 nm bins. Spectral data are reduced from spectra and recorded in tristimulus XYZ values, CieLAB L*a*b* values, and other units.
DOI: 10.5281/zenodo.7708662
title: IODP Expedition 385 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.5281/zenodo.7708661
title: IODP Expedition 385 RGB channels (calculated from core photos)

description: Red, green, and blue pixel data were extracted from Section Half Imaging Logger (SHIL) linescan images, typically binned at 0.5 cm resolution using the central 2 cm of the image.
DOI: 10.5281/zenodo.7708657
title: IODP Expedition 385 Thermal conductivity

description: Thermal conductivity was measured using the heated needle method in either full-space needle configuration (soft/saturated sediments) or half-space needle configuration (harder materials) of a TeKa Berlin TK-04 thermal conductivity meter. Heat is applied to the sample and then thermal equilibrium is sought. The heating and equilibration curve is reduced to derive the thermal conductivity value. Raw data are stored if a user wishes to do off-line or postexpedition reduction.
DOI: 10.5281/zenodo.7708656
title: IODP Expedition 385 Thermal conductivity

description: Thermal conductivity was measured using the heated needle method in either full-space needle configuration (soft/saturated sediments) or half-space needle configuration (harder materials) of a TeKa Berlin TK-04 thermal conductivity meter. Heat is applied to the sample and then thermal equilibrium is sought. The heating and equilibration curve is reduced to derive the thermal conductivity value. Raw data are stored if a user wishes to do off-line or postexpedition reduction.
DOI: 10.5281/zenodo.7708651
title: IODP Expedition 385 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.7708650
title: IODP Expedition 385 Salinity

description: Salinity was measured on interstitial water (IW) samples using an optical refractometer.
DOI: 10.5281/zenodo.7708649
title: IODP Expedition 385 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.7708648
title: IODP Expedition 385 Sample report

description: Report includes detailed information about samples taken for testing: location/depth, type/form factor, test, request number, and database identifier.
DOI: 10.5281/zenodo.7708644
title: IODP Expedition 385 Spectrophotometry

description: Interstitial water constitutents were measured by UV-VIS spectrometry using colorimetric methods (e.g., ammonium, nitrate, nitrite, phosphate, silica, and sulfide) by an Agilent CARY 100 UV-VIS spectrophotometer.
DOI: 10.5281/zenodo.7708643
title: IODP Expedition 385 Spectrophotometry

description: Interstitial water constitutents were measured by UV-VIS spectrometry using colorimetric methods (e.g., ammonium, nitrate, nitrite, phosphate, silica, and sulfide) by an Agilent CARY 100 UV-VIS spectrophotometer.
DOI: 10.5281/zenodo.7708642
title: IODP Expedition 385 Magnetic remanence (spinner)

description: Magnetic remanence was measured on discrete samples by an Agico JR-6A spinner magnetometer, first as natural remanent magnetization (NRM) and then after demagnetization or remagnetization steps were performed on the samples (e.g., alternating field [AF] demagnetization, thermal demagnetization [TD], or isothermal remanent magnetization [IRM]).
DOI: 10.5281/zenodo.7708641
title: IODP Expedition 385 Magnetic remanence (spinner)

description: Magnetic remanence was measured on discrete samples by an Agico JR-6A spinner magnetometer, first as natural remanent magnetization (NRM) and then after demagnetization or remagnetization steps were performed on the samples (e.g., alternating field [AF] demagnetization, thermal demagnetization [TD], or isothermal remanent magnetization [IRM]).
DOI: 10.5281/zenodo.7708636
title: IODP Expedition 385 Magnetic susceptibility (KappaBridge)

description: Bulk magnetic susceptibility and anisotropy of magnetic susceptibility (AMS) were measured on discrete samples using an Agico KLY-4 KappaBridge susceptibility meter. Report includes individual and average principal susceptibilities, inclination and declination of principal susceptibilities, and volume-corrected bulk susceptibility.
DOI: 10.5281/zenodo.7708635
title: IODP Expedition 385 Magnetic susceptibility (KappaBridge)

description: Bulk magnetic susceptibility and anisotropy of magnetic susceptibility (AMS) were measured on discrete samples using an Agico KLY-4 KappaBridge susceptibility meter. Report includes individual and average principal susceptibilities, inclination and declination of principal susceptibilities, and volume-corrected bulk susceptibility.
DOI: 10.6084/m9.figshare.22236526
title: minimal data set.csv

description: In the recipients of living-donor liver transplantation, postoperative cumulative change in serum albumin level using the area under the threshold can predict the Sequential Organ Failure Assessment (SOFA) score on postoperative day 5.
DOI: 10.6084/m9.figshare.22236526.v1
title: minimal data set.csv

description: In the recipients of living-donor liver transplantation, postoperative cumulative change in serum albumin level using the area under the threshold can predict the Sequential Organ Failure Assessment (SOFA) score on postoperative day 5.
DOI: 10.5281/zenodo.7708633
title: IODP Expedition 385 X-ray diffraction (XRD)

description: X-ray diffraction (XRD) is used to identify minerals and their proportions in sediment or hard rock sample powders on a Bruker AXS D4 Endeavor X-ray diffractometer. Results are returned as diffractograms in a viewable format (either PDF or PNG).
DOI: 10.5281/zenodo.7708632
title: IODP Expedition 385 X-ray diffraction (XRD)

description: X-ray diffraction (XRD) is used to identify minerals and their proportions in sediment or hard rock sample powders on a Bruker AXS D4 Endeavor X-ray diffractometer. Results are returned as diffractograms in a viewable format (either PDF or PNG).
DOI: 10.5281/zenodo.7708625
title: IODP Expedition 385 Moisture and Density

description: Moisture and density (MAD) data were acquired on ~10 mL sediment or rock samples by measuring three out of four material parameters: wet (saturated) mass, wet volume, dry mass, and/or dry volume after 24 h drying in a convection oven at 105 degrees C. From the moisture and volume measurements, the following phase relationships are calculated: wet and dry water content, wet bulk density, dry bulk density, grain density, porosity, and void ratio. The combination of measurements is defined by the submethod chosen: A, B, C, or D. Wet (A, B, or C) and dry (A, B, C, or D) mass is determined using motion-compensated balances. Wet volume is determined either by helium pycnometry (A) or by the sample's geometric dimensions using calipers (A or D). Dry volume (C or D) is measured by helium pycnometry. Submethods A and B are not recommended by IODP. Submethod C is suitable for saturated materials such as fine-grained sediments. Submethod D is suitable for unsaturated porous material such as certain limestones and basalts.