cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14059242
title: Additional file 1 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 1 : Table S1. Full ASV table of bacterial sequences with six taxonomic levels. P. major individual codes (Table 2) are shown in columns. Codes that end with 1 represent the initial microbial communities, 2–4 represent diet manipulation period, 5 represent the microbial communities at the end of the diet manipulation period, 6–8 represent the diet reversal period and 9 represent the end of the diet reversal period. Individual codes start with “M” were exposed to the mixed diet, “S” was exposed to the seed, while “W” were exposed to mealworm diet during the diet manipulation period. GenBank accession numbers of each sample is provided above the sample code.
DOI: 10.6084/m9.figshare.14059242.v1
title: Additional file 1 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 1 : Table S1. Full ASV table of bacterial sequences with six taxonomic levels. P. major individual codes (Table 2) are shown in columns. Codes that end with 1 represent the initial microbial communities, 2–4 represent diet manipulation period, 5 represent the microbial communities at the end of the diet manipulation period, 6–8 represent the diet reversal period and 9 represent the end of the diet reversal period. Individual codes start with “M” were exposed to the mixed diet, “S” was exposed to the seed, while “W” were exposed to mealworm diet during the diet manipulation period. GenBank accession numbers of each sample is provided above the sample code.
DOI: 10.6084/m9.figshare.14059245
title: Additional file 2 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 2 : Table S2. Subset of the full ASV table only including microbial communities from week 1 (initial microbiomes), week 5 (microbiomes after the diet manipulation), and week 9 (reversed microbiomes). GenBank accession numbers of each sample is provided above the sample code.
DOI: 10.6084/m9.figshare.14059245.v1
title: Additional file 2 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 2 : Table S2. Subset of the full ASV table only including microbial communities from week 1 (initial microbiomes), week 5 (microbiomes after the diet manipulation), and week 9 (reversed microbiomes). GenBank accession numbers of each sample is provided above the sample code.
DOI: 10.6084/m9.figshare.14059248
title: Additional file 3 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 3 : Table S3. Rarefied ASV table (only the samples from week 1, week 5 and week 9) with 1045 sequences per sample. Colum names are same as in the Table S2.
DOI: 10.6084/m9.figshare.14059248.v1
title: Additional file 3 of Flexibility and resilience of great tit (Parus major) gut microbiomes to changing diets

description: Additional file 3 : Table S3. Rarefied ASV table (only the samples from week 1, week 5 and week 9) with 1045 sequences per sample. Colum names are same as in the Table S2.
DOI: 10.6084/m9.figshare.14059332
title: Additional file 1 of Molecular cloning and characterization of GhERF105, a gene contributing to the regulation of gland formation in upland cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1 The downregulated DEGs between Z12 and Z12XW. Table S2 The downregulated DEGs between L7 and L7XW. Table S3 Categories of transcription factors in DEGs. Table S4 List of primers used for cloning GhERF105. Table S5 Primer of Real-time PCR used in the expression analysis of GhERF105 and other genes. Table S6 List of primers used in VIGS experiment. Table S7 List of primers used in subcellular localization. Table S8 List of primers used in transactivation activity experiment.
DOI: 10.6084/m9.figshare.14059332.v1
title: Additional file 1 of Molecular cloning and characterization of GhERF105, a gene contributing to the regulation of gland formation in upland cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1 The downregulated DEGs between Z12 and Z12XW. Table S2 The downregulated DEGs between L7 and L7XW. Table S3 Categories of transcription factors in DEGs. Table S4 List of primers used for cloning GhERF105. Table S5 Primer of Real-time PCR used in the expression analysis of GhERF105 and other genes. Table S6 List of primers used in VIGS experiment. Table S7 List of primers used in subcellular localization. Table S8 List of primers used in transactivation activity experiment.
DOI: 10.6084/m9.figshare.14059327
title: Additional file 1 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1 Genetic distance matrix between parents assessed with SSR and SNP markers.
DOI: 10.6084/m9.figshare.14059330
title: Additional file 2 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 2 Table S2 The list of 286 Upland cotton (Gossypium hirsutum L.) parents and their origin and classification
DOI: 10.6084/m9.figshare.14059327.v1
title: Additional file 1 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 1 Table S1 Genetic distance matrix between parents assessed with SSR and SNP markers.
DOI: 10.6084/m9.figshare.14059333
title: Additional file 3 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 3 Table S3 198 polymorphic SSR markers amplified in 286 parents.
DOI: 10.6084/m9.figshare.14059333.v1
title: Additional file 3 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 3 Table S3 198 polymorphic SSR markers amplified in 286 parents.
DOI: 10.6084/m9.figshare.14059330.v1
title: Additional file 2 of Assessment of heterosis based on parental genetic distance estimated with SSR and SNP markers in upland cotton (Gossypium hirsutum L.)

description: Additional file 2 Table S2 The list of 286 Upland cotton (Gossypium hirsutum L.) parents and their origin and classification
DOI: 10.6084/m9.figshare.14059455
title: Additional file 2 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 2: Figure. PCR for antigen receptor rearrangement, liver and ascites, dog.
DOI: 10.6084/m9.figshare.14059455.v1
title: Additional file 2 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 2: Figure. PCR for antigen receptor rearrangement, liver and ascites, dog.
DOI: 10.6084/m9.figshare.14059458
title: Additional file 3 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 3: Table. TCR primer sequences.
DOI: 10.6084/m9.figshare.14059458.v1
title: Additional file 3 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 3: Table. TCR primer sequences.
DOI: 10.6084/m9.figshare.14059461
title: Additional file 4 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 4: Table. Rank read count of clones.
DOI: 10.6084/m9.figshare.14059461.v1
title: Additional file 4 of Use of immune repertoire sequencing to resolve discordant microscopic and immunochemical findings in a case of T cell-rich large B cell lymphoma in a young dog

description: Additional file 4: Table. Rank read count of clones.
DOI: 10.6084/m9.figshare.14059489
title: Additional file 10 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 10: Table S6. Significant pathways identified by KEGG analysis of the 2353 DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type. (XLS 29 kb)
DOI: 10.6084/m9.figshare.14059489.v1
title: Additional file 10 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 10: Table S6. Significant pathways identified by KEGG analysis of the 2353 DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type. (XLS 29 kb)
DOI: 10.6084/m9.figshare.14059501
title: Additional file 13 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 13: Table S8. Gene count and gene FPKM values from the RNA-seq in this study.
DOI: 10.6084/m9.figshare.14059501.v1
title: Additional file 13 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 13: Table S8. Gene count and gene FPKM values from the RNA-seq in this study.
DOI: 10.6084/m9.figshare.14059516
title: Additional file 5 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 5: Table S3. DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type under short day condition. (XLS 314 kb)
DOI: 10.6084/m9.figshare.14059516.v1
title: Additional file 5 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 5: Table S3. DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type under short day condition. (XLS 314 kb)
DOI: 10.6084/m9.figshare.14059519
title: Additional file 6 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 6: Table S4. DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type under long day condition. (XLS 486 kb)
DOI: 10.6084/m9.figshare.14059525
title: Additional file 8 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 8: Table S5. Significant categories identified by GO analysis of the 2353 DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type. (XLS 42 kb)
DOI: 10.6084/m9.figshare.14059519.v1
title: Additional file 6 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 6: Table S4. DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type under long day condition. (XLS 486 kb)
DOI: 10.6084/m9.figshare.14059525.v1
title: Additional file 8 of Overexpression of a methyl-CpG-binding protein gene OsMBD707 leads to larger tiller angles and reduced photoperiod sensitivity in rice

description: Additional file 8: Table S5. Significant categories identified by GO analysis of the 2353 DEGs between the OsMBD707-overexpression line OX707-#21 and wild-type. (XLS 42 kb)
DOI: 10.6084/m9.figshare.14059572
title: Additional file 1 of Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.14059572.v1
title: Additional file 1 of Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer

description: Additional file 1: Table S1.
DOI: 10.6084/m9.figshare.14059596
title: Additional file 9 of Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer

description: Additional file 9: Table S7.
DOI: 10.6084/m9.figshare.14059596.v1
title: Additional file 9 of Discovery and validation of FBLN1 and ANT3 as potential biomarkers for early detection of cervical cancer

description: Additional file 9: Table S7.
DOI: 10.6084/m9.figshare.14059606
title: Additional file 1 of Reasons for cannabidiol use: a cross-sectional study of CBD users, focusing on self-perceived stress, anxiety, and sleep problems

description: Additional file 1: User Survey. Table S1. Demographic variables of the 28 non-responders. Table S2. Reasons for use of cannabidiol by sex, age and location. Results are presented as n (%).
DOI: 10.6084/m9.figshare.14059606.v1
title: Additional file 1 of Reasons for cannabidiol use: a cross-sectional study of CBD users, focusing on self-perceived stress, anxiety, and sleep problems

description: Additional file 1: User Survey. Table S1. Demographic variables of the 28 non-responders. Table S2. Reasons for use of cannabidiol by sex, age and location. Results are presented as n (%).
DOI: 10.6084/m9.figshare.14059618
title: Additional file 1 of Mining prognostic markers of Asian hepatocellular carcinoma patients based on the apoptosis-related genes

description: Additional file 1.
DOI: 10.6084/m9.figshare.14059618.v1
title: Additional file 1 of Mining prognostic markers of Asian hepatocellular carcinoma patients based on the apoptosis-related genes

description: Additional file 1.
DOI: 10.6084/m9.figshare.14059689
title: Additional file 1 of Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus

description: Additional file 1: Table S1. Genomic features and isolation sources of strains used in this study
DOI: 10.6084/m9.figshare.14059689.v1
title: Additional file 1 of Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus

description: Additional file 1: Table S1. Genomic features and isolation sources of strains used in this study
DOI: 10.6084/m9.figshare.14059695
title: Additional file 3 of Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus

description: Additional file 3: Table S2. Accessory genes associated with HA or NHA habitats in M. luteus
DOI: 10.6084/m9.figshare.14059695.v1
title: Additional file 3 of Comparative genomics reveals broad genetic diversity, extensive recombination and nascent ecological adaptation in Micrococcus luteus

description: Additional file 3: Table S2. Accessory genes associated with HA or NHA habitats in M. luteus
DOI: 10.6084/m9.figshare.14059765
title: Additional file 1 of FiNGS: high quality somatic mutations using filters for next generation sequencing

description: Additional file 1 Supplementary Table 1: Filters included in FiNGS, with descriptions and rationales for each of them. Also includes default values in FiNGS, ICGC recommendations and FPfilter values. Using a subset of the validation data, we calculated the recall, precision and F1 scores for each set of parameters in each filter and report the parameter with the highest F1 score.
DOI: 10.6084/m9.figshare.14059765.v1
title: Additional file 1 of FiNGS: high quality somatic mutations using filters for next generation sequencing

description: Additional file 1 Supplementary Table 1: Filters included in FiNGS, with descriptions and rationales for each of them. Also includes default values in FiNGS, ICGC recommendations and FPfilter values. Using a subset of the validation data, we calculated the recall, precision and F1 scores for each set of parameters in each filter and report the parameter with the highest F1 score.
DOI: 10.6084/m9.figshare.14059785
title: Additional file 11 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 11. Genes list present in RRobN QTL. Gene functions from FunRiceGenes database. Thirteen unidentified genes, five retrotransposon genes, and two transposons have been omitted of this list.
DOI: 10.6084/m9.figshare.14059791
title: Additional file 13 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 13. 2 major haplotypes for NIS3 present in the sample susceptible to CD203 determinate by k-group calculation with rice 3000 genomes database references.
DOI: 10.6084/m9.figshare.14059785.v1
title: Additional file 11 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 11. Genes list present in RRobN QTL. Gene functions from FunRiceGenes database. Thirteen unidentified genes, five retrotransposon genes, and two transposons have been omitted of this list.
DOI: 10.6084/m9.figshare.14059788
title: Additional file 12 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 12. Genes list present in NIS2 QTL. Genes function was annotated from FunRiceGenes data base and Orygenes database. Nineteen unidentified genes, three retrotransposon genes, and three transposons have been omitted from this list.
DOI: 10.6084/m9.figshare.14059788.v1
title: Additional file 12 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 12. Genes list present in NIS2 QTL. Genes function was annotated from FunRiceGenes data base and Orygenes database. Nineteen unidentified genes, three retrotransposon genes, and three transposons have been omitted from this list.
DOI: 10.6084/m9.figshare.14059797
title: Additional file 15 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 15. Genes list present in NIS3 QTL with Gene function from FunRiceGenes data base and Orygenes database. The fifth column correspond to the gene differentially expressed in Huang et al. 2017. Nineteen unidentified genes, three retrotransposon genes, and three transposons have been omitted from this list.
DOI: 10.6084/m9.figshare.14059791.v1
title: Additional file 13 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 13. 2 major haplotypes for NIS3 present in the sample susceptible to CD203 determinate by k-group calculation with rice 3000 genomes database references.
DOI: 10.6084/m9.figshare.14059797.v1
title: Additional file 15 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 15. Genes list present in NIS3 QTL with Gene function from FunRiceGenes data base and Orygenes database. The fifth column correspond to the gene differentially expressed in Huang et al. 2017. Nineteen unidentified genes, three retrotransposon genes, and three transposons have been omitted from this list.
DOI: 10.6084/m9.figshare.14059800
title: Additional file 16 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file16. Frequency of NIS3 haplotype by subpopulation in 3000 genomes.
DOI: 10.6084/m9.figshare.14059800.v1
title: Additional file 16 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file16. Frequency of NIS3 haplotype by subpopulation in 3000 genomes.
DOI: 10.6084/m9.figshare.14059803
title: Additional file 1 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 1. List of varieties phenotyped with CD203 strains and used for GWAS.
DOI: 10.6084/m9.figshare.14059806
title: Additional file 2 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 2. List of varieties phenotyped with CL26 strains.
DOI: 10.6084/m9.figshare.14059809
title: Additional file 3 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 3. List of varieties used as validation set. Varieties have been selected for their k-group classification of 19 SNPs selected to characterize the NIS3 QTL.
DOI: 10.6084/m9.figshare.14059815
title: Additional file 5 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 5. Analysis of Variance table of Nitrogen and Genotype effect on the number of lesion of rice blast by cm2 of leaves. ANOVA calculated from linear model. Significance level at 0.05.
DOI: 10.6084/m9.figshare.14059803.v1
title: Additional file 1 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 1. List of varieties phenotyped with CD203 strains and used for GWAS.
DOI: 10.6084/m9.figshare.14059806.v1
title: Additional file 2 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 2. List of varieties phenotyped with CL26 strains.
DOI: 10.6084/m9.figshare.14059809.v1
title: Additional file 3 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 3. List of varieties used as validation set. Varieties have been selected for their k-group classification of 19 SNPs selected to characterize the NIS3 QTL.
DOI: 10.6084/m9.figshare.14059815.v1
title: Additional file 5 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 5. Analysis of Variance table of Nitrogen and Genotype effect on the number of lesion of rice blast by cm2 of leaves. ANOVA calculated from linear model. Significance level at 0.05.
DOI: 10.6084/m9.figshare.14059818
title: Additional file 6 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 6. Descriptive Statistic of Rice blast susceptibility by level of Nitrogen and NISI on the number of lesion of rice blast by cm2 of leaves.
DOI: 10.6084/m9.figshare.14059818.v1
title: Additional file 6 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 6. Descriptive Statistic of Rice blast susceptibility by level of Nitrogen and NISI on the number of lesion of rice blast by cm2 of leaves.
DOI: 10.6084/m9.figshare.14059824
title: Additional file 8 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 8. Significant SNPs detected in each GWAS. A SNP is considerate as significant when -log(P) ≥ 5.
DOI: 10.6084/m9.figshare.14059824.v1
title: Additional file 8 of Genome-wide association of rice response to blast fungus identifies loci for robust resistance under high nitrogen

description: Additional file 8. Significant SNPs detected in each GWAS. A SNP is considerate as significant when -log(P) ≥ 5.