cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7937/gkr0-xv29
title: A whole-body FDG-PET/CT dataset with manually annotated tumor lesions (FDG-PET-CT-Lesions)
title: FDG-PET-CT-Lesions

description: Purpose: To provide an annotated data set of oncologic PET/CT studies for the development and training of machine learning methods and to help address the limited availability of publicly available high-quality training data for PET/CT image analysis projects.  This data can also be used for machine learning challenges.  
Data: The anonymized publication of data was approved by the local ethics committee and data protection officer. 501 consecutive whole body FDG-PET/CT data sets of patients with malignant lymphoma, melanoma and non small cell lung cancer (NSCLC) as well as 513 data sets without PET-positive malignant lesions (negative controls) examined between 2014 and 2018 at the University Hospital Tübingen were included. All examinations were acquired on a single, state-of-the-art PET/CT scanner (Siemens Biograph mCT). The imaging protocol consists of a diagnostic CT scan (mainly from skull base to mid-thigh level) with intravenous contrast enhancement in most cases, except for patients with contraindications. The following CT parameters were used: reference dose of 200 mAs, tube voltage of 120 kV, iterative reconstruction with a slice thickness of 2 - 3 mm. In addition, a whole-body FDG-PET scan was acquired 60 minutes after I.V. injection of 300-350 MBq 18F-FDG. PET data were reconstructed using an ordered-subset expectation maximization (OSEM) algorithm with 21 subsets and 2 iterations and a gaussian kernel of 2 mm and a matrix size of 400 x 400.

All data sets were analyzed in a clinical setting by a radiologist and nuclear medicine physician in consensus identifying primary tumors and metastases in each data set. All FDG-avid lesions identified as malignant based on patient history and prior examinations were manually segmented on PET images in a slice-per-slice manner by a single reader using dedicated software (NORA imaging platform, University of Freiburg, Germany).

We provide the anonymized original DICOM files of all studies as well as the DICOM segmentation masks.  Primary diagnosis, age and sex are provided as non-imaging information. In addition, we  provide a link to code that can produce a preprocessed version of the data with resampled and aligned PET, CT, and masks as a NIfTI file ready to use in machine learning projects.
DOI: 10.3535/9wv-rn2-cbl
title: Phragmatobia fuliginosa (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.35079/hbm896.shbm.398
title: RNAseq data from the lung (right) of a 33-year-old black or african american female
DOI: 10.3535/kdv-7kr-25f
title: Morophaga choragella (Denis & Schiff., 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/kwk-2q6-cx0
title: Panthea coenobita (Esper, 1785)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/tmr-f43-4m4
title: Parnassius mnemosyne (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/e8h-pzy-78h
title: Papestra biren Goeze, 1781

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/rpc-kz5-ybn
title: Mecyna flavalis [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/798-yav-6jq
title: Mythimna (Mythimna) conigera [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/10r-yq8-g59
title: Scoparia ancipitella de la Harpe, 1855

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/p75-23r-f0a
title: Chrysoteuchia culmella Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/q2v-sxs-yez
title: Trisateles emortualis ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.35079/hbm683.zsdh.762
title: RNAseq data from the lung (right) of a 25-year-old white female
DOI: 10.3535/aqj-dw9-rnr
title: Notodonta ziczac (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/twt-4jh-129
title: Diasemia reticularis Linnaeus, 1761

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/88m-cxe-k1y
title: Oligia latruncula ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z9r-qcf-e42
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.35079/hbm663.jcwn.635
title: RNAseq data from the lung (left) of a 23.8-year-old white male
DOI: 10.3535/4h1-l39-0yg
title: Conistra (Conistra) vaccinii (Linnaeus, 1761)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/wef-esk-mly
title: Autographa Hübner, 1821

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/g5r-fqk-n4k
title: Catocala adultera Ménétriés, 1856

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/fsk-vdn-g75
title: Epinotia Hübner, [1825], 1816

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/z2e-k5x-cpp
title: Apamea (Apamea) unanimis (Hübner, 1813)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/k46-0ne-34z
title: Apamea (Apamea) furva ([Denis & Schiffermüller], 1775)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/80j-kqk-mav
title: Caradrina (Caradrina) morpheus (Hufnagel, 1766)

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.35079/hbm826.bqls.392
title: RNAseq data from the lung (right) of a 25-year-old white female
DOI: 10.3535/9bg-f5c-swv
title: Saturnia (Eudia) pavonia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.3535/y87-4x1-9sk
title: Lacanobia (Dianobia) contigua [Denis & Schiffermüller], 1775

description: Digital Specimen for the physical specimen hosted at Finnish Museum of Natural History.
DOI: 10.15468/dl.nvzvsj
title: Occurrence Download

description: A dataset containing 40860 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardiospermum"
 ]
}

 The dataset includes 40860 records from 832 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056946-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.th4k4g
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyathea dyeri Sodiro"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150726-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjbhux
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Dendrobium crystallinum Rchb.f.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049682-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vp92ry
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Garcinia tetralata C.Y.Wu ex Y.H.Li"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003866-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a3ectk
title: Occurrence Download

description: A dataset containing 4709 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Eucharitidae)"
 ]
}

 The dataset includes 4709 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0216417-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hlq297
title: Occurrence Download

description: A dataset containing 55218 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Amphibia",
 "TaxonKey is Aves",
 "TaxonKey is Insecta",
 "TaxonKey is Reptilia",
 "TaxonKey is Mammalia",
 "TaxonKey is Chilopoda",
 "TaxonKey is Diplopoda",
 "TaxonKey is Arachnida"
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "DecimalLongitude is greater than or equal to -65.000000",
 "DecimalLongitude is less than -60.000000",
 "DecimalLatitude is greater than or equal to 50.000000",
 "DecimalLatitude is less than 55.000000",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 55218 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049683-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frt3ht
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centropogon hirtiflorus Drake"
 ]
}

 The dataset includes 14 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0150727-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.huxbhe
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Megapodius geelvinkianus A.B.Meyer, 1874"
 ]
}

 The dataset includes 113 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010574-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2k2xlb
title: Occurrence Download

description: A dataset containing 495720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plegadis falcinellus (Linnaeus, 1766)"
 ]
}

 The dataset includes 495720 records from 300 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031983-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nlkxbi
title: Occurrence Download

description: A dataset containing 2226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caesalpinia pulcherrima (L.) Sw.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2226 records from 194 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049685-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcjq9a
title: Occurrence Download

description: A dataset containing 96503 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocodylus porosus Schneider, 1801"
 ]
}

 The dataset includes 96503 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017814-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wu9pba
title: Occurrence Download

description: A dataset containing 20723348 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 20723348 records from 3084 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257344-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5p84476p
title: MassIVE MSV000096846 - Chagas Disease Tropism_Tolerance
title: DDA LC_MS/MS from heart (Section B) tissue of mice with or without T. cruzi infection
DOI: 10.6084/m9.figshare.28201059
title: Additional file 3 of Specific plasma metabolite profile in intestinal Behçet’s syndrome

description: Supplementary material 3.
DOI: 10.6084/m9.figshare.28201090
title: Additional file 11 of Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp

description: Supplementary Material 11. Table S5: The DEGs of PAL, CHI, CHS and F3H related to flavonoids.
DOI: 10.6084/m9.figshare.28201084
title: Additional file 9 of Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp

description: Supplementary Material 9. Table S3: The differentially expressed MYB, bHLH and WD40 genes identified between Shiluan02-1 and Hengzi151.
DOI: 10.6084/m9.figshare.28201084.v1
title: Additional file 9 of Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp

description: Supplementary Material 9. Table S3: The differentially expressed MYB, bHLH and WD40 genes identified between Shiluan02-1 and Hengzi151.
DOI: 10.6084/m9.figshare.28201078
title: Additional file 7 of Integrated metabolomic and transcriptomic analysis of anthocyanin metabolism in wheat pericarp

description: Supplementary Material 7. Table S1: The information of metabolome.
DOI: 10.6084/m9.figshare.28201104.v1
title: Additional file 1 of Potential drug targets for asthma identified through mendelian randomization analysis

description: Supplementary Material 1: Supplementary tables. Table S1.Genetic instruments of plasma and brain proteins for MR analysis. Table S2. Genetic instruments of asthma for bidirectional MR.Table S3. Heterogeneity analysis on proteins with two or more instruments.Table S4. Previously-reported genome-wide significant association of SNPs as genetic instruments of seven potential causal proteins.Table S5. Medications for asthma and their corresponding drug targets.Table S6. Current medications targeting seven potential causal proteins and interacted proteins.Table S7. Colocalization analysis of seven potential causal proteins and asthma.Table S8. Genetic instruments of seven potential causal proteins for external validation.
DOI: 10.15468/dl.xuc2p8
title: Occurrence Download

description: A dataset containing 614 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Coquillettidia venezuelensis (Theobald, 1912)"
 ]
}

 The dataset includes 614 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067789-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.572nh9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arthroleptis wahlbergii Smith, 1849",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034066-250525065834625/datasets/export for details.
DOI: 10.15468/dl.d2sfah
title: Occurrence Download

description: A dataset containing 4354 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyrtopodium R.Br."
 ]
}

 The dataset includes 4354 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034067-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mntchz
title: Occurrence Download

description: A dataset containing 897798 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Geometry POLYGON((-80.32968240255838 2.32692307692308,-76.32968240255838 2.32692307692308,-76.32968240255838 6.32692307692308,-80.32968240255838 6.32692307692308,-80.32968240255838 2.32692307692308))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Coati Lacépède, 1799, Animalia)",
 "Year 2020-2024"
 ]
}

 The dataset includes 897798 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0175992-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.863m4b
title: Occurrence Download

description: A dataset containing 4188003 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((3.70401 47.9577,0.978385 47.9577,0.978385 49.7561,3.70401 49.7561,3.70401 47.9577))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 }
 ]
}

 The dataset includes 4188003 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081797-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cw9hv6
title: Occurrence Download

description: A dataset containing 6768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrostephanus rodgersii (A.Agassiz, 1864)",
 "OccurrenceStatus is Present",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6768 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019069-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q21ejh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rhynchocypris czekanowskii (Dybowski, 1869)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031713-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bm5ae
title: Occurrence Download

description: A dataset containing 5658584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-120.198 37.5482,-122.489 37.5482,-122.489 38.8313,-122.489 39.3499,-120.675 39.3499,-120.198 39.3499,-120.198 37.5482))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 }
 ]
}

 The dataset includes 5658584 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081801-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5wqp2g
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia amplexicaulis Naudin"
 ]
}

 The dataset includes 51 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176011-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2mprz
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Larus ridibundus Linnaeus, 1766"
 ]
}

 The dataset includes 192 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004217-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jaaly1
title: Occurrence Download

description: A dataset containing 2454591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((152.284 -34.7754,150.122 -34.7754,150.122 -32.9724,152.284 -32.9724,152.284 -34.7754))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 }
 ]
}

 The dataset includes 2454591 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081804-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.amdv8n
title: Occurrence Download

description: A dataset containing 369907 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The fossil collection (F) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 369907 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031724-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urwspc
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyathea persquamulifera (Alderw.) Domin"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010619-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.