cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14439425.v3
title: Biofuels reserve controlled wildfire regimes since the last deglaciation: a record from Gonghai Lake, North China

description: <b>Wildfire activity is an important factor in the evolution of vegetation. However, our knowledge of the response of wildfire to dry-wet climate and environmental changes during the past ~11,600 years (the Holocene) is still debatable. We conducted a study of the black carbon record of a sediment core spanning the last 14.8 kyr from Gonghai Lake, located in North China. We observed a close relationship between the timing of wildfire activity and vegetation development that driven by summer monsoon intensity.On multi-millennial timescale, suitable climatic conditions provid a sufficient biofuels reserve to sustain wildfire. The regional potential biofuels reserve is shown to be an important control on regional wildfire activity in the monsoon region of China, under natural conditions. It can be inferred that with strengthening of global warming and East Asian summer monsoon, incidence of wildfire in monsoon region of China may be higher in future. </b>
DOI: 10.6084/m9.figshare.14439425
title: Biofuels reserve controlled wildfire regimes since the last deglaciation: a record from Gonghai Lake, North China

description: Wildfire activity is an important activity in evolution of vegetation and carbon cycling. Whether wet weather will suppress wildfire or promote them by increasing fuel reserves during the Holocene is not clear. We obtained a record of black carbon from a sediment core spanning the last 14.8 kyr from Gonghai Lake, in North China. There is a close relationship between the timing of wildfire activity and vegetation development driven by the East Asian summer monsoon intensity. On a millennial timescales, wet climatic conditions provide a sufficient biofuels reserve, in the same period wildfire increase; thus, the regional potential biofuels reserve is shown to be an important controlling of regional wildfire activity in the monsoon region of China, under natural conditions. We infer that with the strengthening of Asian summer monsoon caused by global warming, the wildfire carbon emission in Asian monsoon region may increase in the future.<br>
DOI: 10.6084/m9.figshare.15131943
title: Customized Stopword List

description: Customized Stopword List
DOI: 10.6084/m9.figshare.15131943.v1
title: Customized Stopword List

description: Customized Stopword List
DOI: 10.6084/m9.figshare.14485419
title: Pumas (Puma concolor) as ecological brokers.xlsx

description: We reviewed the published literature to address the question of what role puma (Puma concolor) plays within the diverse set of ecosystems it inhabits across the western hemisphere. We searched the ISI Web of Science databases and Google Scholar for keywords (page 1) associated with puma species interactions and their ecological roles and found 162 studies published between 1950-2020. These studies reported evidence of 542 distinct ecological interactions between pumas and other biota, across 484 distinct species.
DOI: 10.6084/m9.figshare.13487295.v6
title: data - draining tension pneumomediastinum.xlsx

description: It combined the local anatomical characteristics to describe a method in a normative manner of draining tension pneumomediastinum.
DOI: 10.25919/5zbn-rd45
title: Parkes observations for project P1054 semester 2021APRS_09

description: With this proposal we ask time for a timing follow-up campaign of the first 5 mllisecond pulsars discovered in the TRAPUM (TRAnsients and PUlsars with Meerkat) survey. The sources have been detected in targeted observations of Fermi unidentified point sources. At least two of the new pulsars belong to binary systems and an initial orbital period of 8.5 hrs has already been estimated for the brightest source. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that will allow us to successfully time these new sources, in the bright-end of TRAPUM discoveries. The UWL has also the unique advantage of allowing detailed studies of the eclipses of the so-called 'spider' pulsars, the vast majority of which have an associated Fermi counterpart.
DOI: 10.6084/m9.figshare.15131991
title: Data-Lardizabala.xlsx

description: The dataset contains the number of seeds of each plant species found in fox scats during one year field collection in Central Chile (Teno, Curico) in an area forested with native vegetation.
DOI: 10.6084/m9.figshare.15131991.v1
title: Data-Lardizabala.xlsx

description: The dataset contains the number of seeds of each plant species found in fox scats during one year field collection in Central Chile (Teno, Curico) in an area forested with native vegetation.
DOI: 10.15468/95uddd
title: Platyceroidini, a new tribe of North American stag beetles (Coleoptera: Lucanidae: Lucaninae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Paulsen, M. J., Hawks, David C. (2008): Platyceroidini, a new tribe of North American stag beetles (Coleoptera: Lucanidae: Lucaninae). Insecta Mundi 2008 (58): 1-2, DOI: http://doi.org/10.5281/zenodo.5170173
DOI: 10.15468/4b5qfd
title: A new genus and species of Brachynemurini from Venezuela (Neuroptera: Myrmeleontidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miller, Robert B. (2008): A new genus and species of Brachynemurini from Venezuela (Neuroptera: Myrmeleontidae). Insecta Mundi 2008 (59): 1-5, DOI: http://doi.org/10.5281/zenodo.5170177
DOI: 10.6084/m9.figshare.15131976.v1
title: Data set for the manuscript "Improving a Biogeochemical Model to Simulate Microbial-mediated Carbon Dynamics in Agricultural ecosystems".

description: This data set contains the DNDC model, model input files, and all data used in the paper "Improving a Biogeochemical Model to Simulate Surface Energy, Greenhouse Gas Fluxes, and Radiative Forcing for Different Land Use Types in Northeastern United States".
DOI: 10.6084/m9.figshare.15132027
title: Biomarkers for Neonatal Sepsis – does a pathogen type matter?

description: The study of immunoregulation in newborns can be helpful in determining the pathophysiology of neonatal sepsis and will contribute to improving the diagnosis, prognosis and treatment. An urgent and unsatisfied medical need remains to understand hyperinflammation or hypoinflammation associated with sepsis in newborns. The study included infants up to 4 days of age. The criterion for determining a case of "sepsis" was a positive blood culture.
DOI: 10.5281/zenodo.5170605
title: A suburban soundscape reveals altered acoustic dynamics during COVID-19 lockdown

description: Abstract The 2020 COVID-19 pandemic and resulting national and international movement restrictions provide a unique opportunity to investigate the consequences of changing anthropogenic noise regimes on animal communities and soundscapes. Here I use this lockdown period as a natural experiment to investigate changes to soundscape intensity, structure, and dynamics during restricted human activity (lockdown) in suburban Nottingham, UK. Using 11 common acoustic indices, I tested for differences in the richness and evenness of the soundscape during COVID-19 lockdown, and I measured changes in soundscape dynamics by comparing the temporal variability of acoustic indices during versus after lockdown. Regardless of how the soundscape was summarised, there were significant differences in the intensity, evenness, and temporal variability of the soundscape during COVID-19 lockdown, principally driven by changes to anthropogenic noise. I recorded a shift away from a dominance of anthropophony towards more intense biological sounds during lockdown, and the lockdown soundscape was generally more even, particularly because of changes to the magnitude of the diurnal cycle. These preliminary results from a mass human confinement experiment provide an early glimpse into how suburban soundscapes are impacted by noise pollution. In time, globally distributed longer-term monitoring efforts will reveal the generality of these findings, facilitating a mechanistic understanding of the impacts of anthropogenic noise on the world’s natural and human-dominated soundscapes.<br> <br> Methods The dataset contains standardised acoustic index values for 11 commonly used acoustic indices, based on AudioMoth recordings taken during two periods around the COVID-19 lockdown (May 2020) and after restrictions had been lifted (Oct 2020) in suburban Nottingham, UK. I analysed the difference in acoustic index values during versus after the lockdown and compared their temporal variability using standardised effect sizes for the difference between these two time periods. I did this on the whole dataset and on several hourly subsets of the dataset (see the manuscript for further details). <br> <br> Usage notes See readme file for further details and main manuscript for descriptions of data.
DOI: 10.5281/zenodo.5170604
title: A suburban soundscape reveals altered acoustic dynamics during COVID-19 lockdown

description: Abstract The 2020 COVID-19 pandemic and resulting national and international movement restrictions provide a unique opportunity to investigate the consequences of changing anthropogenic noise regimes on animal communities and soundscapes. Here I use this lockdown period as a natural experiment to investigate changes to soundscape intensity, structure, and dynamics during restricted human activity (lockdown) in suburban Nottingham, UK. Using 11 common acoustic indices, I tested for differences in the richness and evenness of the soundscape during COVID-19 lockdown, and I measured changes in soundscape dynamics by comparing the temporal variability of acoustic indices during versus after lockdown. Regardless of how the soundscape was summarised, there were significant differences in the intensity, evenness, and temporal variability of the soundscape during COVID-19 lockdown, principally driven by changes to anthropogenic noise. I recorded a shift away from a dominance of anthropophony towards more intense biological sounds during lockdown, and the lockdown soundscape was generally more even, particularly because of changes to the magnitude of the diurnal cycle. These preliminary results from a mass human confinement experiment provide an early glimpse into how suburban soundscapes are impacted by noise pollution. In time, globally distributed longer-term monitoring efforts will reveal the generality of these findings, facilitating a mechanistic understanding of the impacts of anthropogenic noise on the world’s natural and human-dominated soundscapes.<br> <br> Methods The dataset contains standardised acoustic index values for 11 commonly used acoustic indices, based on AudioMoth recordings taken during two periods around the COVID-19 lockdown (May 2020) and after restrictions had been lifted (Oct 2020) in suburban Nottingham, UK. I analysed the difference in acoustic index values during versus after the lockdown and compared their temporal variability using standardised effect sizes for the difference between these two time periods. I did this on the whole dataset and on several hourly subsets of the dataset (see the manuscript for further details). <br> <br> Usage notes See readme file for further details and main manuscript for descriptions of data.
DOI: 10.15468/b6rug8
title: Una nueva especie del género Eugnosta Hübner, de Chile (Lepidoptera: Tortricidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cepeda, Danilo E. (2017): Una nueva especie del género Eugnosta Hübner, de Chile (Lepidoptera: Tortricidae). Insecta Mundi 2017 (565): 1-6, DOI: http://doi.org/10.5281/zenodo.5170445
DOI: 10.15468/4mt8gs
title: Eucnemid larvae of the Nearctic region. Part VI: Descriptions of the fifth instar and prepupal larval stages of Stethon pectorosus LeConte, 1866 (Coleoptera: Eucnemidae: Eucneminae: Mesogenini), with notes on their biology

description: This dataset contains the digitized treatments in Plazi based on the original journal article Otto, Robert L., Gruber, Jeffrey P. (2016): Eucnemid larvae of the Nearctic region. Part VI: Descriptions of the fifth instar and prepupal larval stages of Stethon pectorosus LeConte, 1866 (Coleoptera: Eucnemidae: Eucneminae: Mesogenini), with notes on their biology. Insecta Mundi 2016 (474): 1-11, DOI: http://doi.org/10.5281/zenodo.5170549
DOI: 10.15468/yyha8a
title: A new species of Dinonigidius de Lisle from Sri Lanka (Coleoptera: Lucanidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Paulsen, M. J. (2016): A new species of Dinonigidius de Lisle from Sri Lanka (Coleoptera: Lucanidae). Insecta Mundi 2016 (484): 1-4, DOI: http://doi.org/10.5281/zenodo.5170621
DOI: 10.15468/jfqemc
title: Classification, natural history, and evolution of the subfamily Peloniinae Opitz (Coleoptera: Cleroidea: Cleridae). Part VI. New taxonomic placement for Pelonium sexpunctatum Kirsch

description: This dataset contains the digitized treatments in Plazi based on the original journal article Opitz, Weston (2016): Classification, natural history, and evolution of the subfamily Peloniinae Opitz (Coleoptera: Cleroidea: Cleridae). Part VI. New taxonomic placement for Pelonium sexpunctatum Kirsch. Insecta Mundi 2016 (496): 1-5, DOI: http://doi.org/10.5281/zenodo.5170665
DOI: 10.15468/6j3cw7
title: Nueva especie de Kessleria Nowicki, 1864 para Chile central (Lepidoptera: Yponomeutidae) asociada a Maytenus boaria Molina (Celastraceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Cepeda, Danilo E. (2016): Nueva especie de Kessleria Nowicki, 1864 para Chile central (Lepidoptera: Yponomeutidae) asociada a Maytenus boaria Molina (Celastraceae). Insecta Mundi 2016 (501): 1-6, DOI: http://doi.org/10.5281/zenodo.5170774
DOI: 10.5281/zenodo.5151217
title: G-Protein Coupled Receptor-Ligand Dissociation Rates and Mechanisms from tauRAMD Simulations

description: Data and Python scripts used for generation and analysis of RAMD dissociation trajectories for several GPCR complexes (including example showing generation of the Protein-Ligand Interaction Fingerprints, IFP, for several representative RAMD trajectories), reported in the manuscript "G-Protein Coupled Receptor-Ligand Dissociation Rates and Mechanisms from tRAMD Simulations" "G-Protein Coupled Receptor-Ligand Dissociation Rates and Mechanisms from tauRAMD Simulations" by Daria B. Kokh, Rebecca C. Wade submitted to the Journal of Chemical Theory and Computation 1. <strong>README.txt </strong>- instruction for script usage 2. <strong>PDBs.zip</strong> - PDB structures of complexes in water box used in the analysis, ligand PDB and mol2 structures 3. <strong>tauRAMD_v2.py </strong>- Python sctipt for estimation relative residence times from Gromacs-RAMD output 4. <strong>IFP_preprocess_Gromacs.py</strong> and <strong>IFP_SL-B2AR-WB-EX.py - </strong>Python scripts for preprocessing of RAMD trajectories and generation of IFPs 5. <strong>Scripts.zip</strong> - additional python functions 6. <strong>IXO-CHL.zip, IXO-ALO-CHL.zip, ACh-CHL.zip, b2AR.zip</strong> - Protein-Ligand Interaction Fingerprints (PL IFPs) generated from RAMD trajectories for <em>mAChR M2 with iperoxo</em>, <em>mAChR M2 </em><em> with iperoxo and PAM, mAChR M2 with ACh, and </em>β<em>2AR with alprenolol </em><em>.</em> 7. <strong>Topology.zip</strong> - Gromacs topology, index.ndx, and coordinate gro files for all four systems 8. <strong>Example_b2AR-alprenolol.zip </strong>- a set of data for a test example showing how IFP can be generated from RAMD trajectories (including several representative trajectories) 9.<strong> Gromacs-IFP-GPCR.ipynb</strong> - Jupyter Notebook for analysis of trajectories using generated IFP data 10. <strong>Auxi-Plots-GPCR.ipynb - </strong>Jupyter Notebook for generation additional plots from the paper 11. <strong>Waters.zip</strong> - number of water molecules in the binding pocket in dissociation trajectories of the <em> </em>β<em>2AR - alprenolol system</em> 12. <strong>GPCR.yml</strong> - JN environment file
DOI: 10.15468/kwf5fa
title: A new species of cave inhabiting Scotoleon Banks from Baja California (Neuroptera: Myrmeleontidae: Brachynemurini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miller, Robert B. (2016): A new species of cave inhabiting Scotoleon Banks from Baja California (Neuroptera: Myrmeleontidae: Brachynemurini). Insecta Mundi 2016 (513): 1-5, DOI: http://doi.org/10.5281/zenodo.5170908
DOI: 10.15468/4d7tej
title: Two new species of stag beetles (Coleoptera: Lucanidae) from western Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Huang, Hao, Chen, Chang-Chin (2016): Two new species of stag beetles (Coleoptera: Lucanidae) from western Yunnan, China. Insecta Mundi 2016 (516): 1-8, DOI: http://doi.org/10.5281/zenodo.5170948
DOI: 10.6084/m9.figshare.15132120
title: Análisis de los determinantes del PIB agrícola en México.

description: This research carries out a descriptive analysis of the productive factors that influenced the total value of agricultural production in Mexico for the period 2000-2019. The bibliographic review was carried out using the official data of the SIAP (Agri-food and Fisheries Information System). The main results show a decrease in the sown agricultural area while maintaining a positive average annual growth rate of the productive factors, which indicates a process of transition from extensive crops, such as grains and cereals, to farm crops. intensive, such as fruit and vegetables.<br>
DOI: 10.6084/m9.figshare.15132120.v1
title: Análisis de los determinantes del PIB agrícola en México.

description: This research carries out a descriptive analysis of the productive factors that influenced the total value of agricultural production in Mexico for the period 2000-2019. The bibliographic review was carried out using the official data of the SIAP (Agri-food and Fisheries Information System). The main results show a decrease in the sown agricultural area while maintaining a positive average annual growth rate of the productive factors, which indicates a process of transition from extensive crops, such as grains and cereals, to farm crops. intensive, such as fruit and vegetables.<br>
DOI: 10.3886/e147003
title: An integrated model for interdisciplinary graduate education

description: <br> The current challenges at the forefront of data-enabled science and engineering require interdisciplinary solutions. Yet most traditional doctoral programs are not structured to support successful interdisciplinary research. Here we describe the design of and students’ experiences in the COMBINE (Computation and Mathematics for Biological Networks) interdisciplinary graduate program at the University of Maryland. COMBINE focuses on the development and application of network science methods to biological systems for students from three primary domains: life sciences, computational/engineering sciences, and mathematical/physical sciences. The program integrates three established models (T-shaped, pi-shaped and shield-shaped) for interdisciplinary training. The program components largely fall into three categories: (1) core coursework that provides content expertise, communication, and technical skills, (2) discipline-bridging elective courses in the two COMBINE domains that complement the student’s home domain, (3) broadening activities such as workshops, symposiums, and formal peer-mentoring groups. Beyond these components, the program builds community through both formal and informal networking and social events. In addition to the interactions with other program participants, students engage with faculty in several ways beyond the conventional adviser framework, such as the requirement to select a second out-of-field advisor, listening to guest speakers, and networking with faculty through workshops. We collected data through post-program surveys, interviews and focus groups with students, alumni and faculty advisors. Overall, COMBINE students and alumni reported feeling that the program components supported their growth in the three program objectives of Network Science & Interdisciplinarity, Communication, and Career Preparation, but also recommended ways to improve the program. The value of the program can be seen not only through the student reports, but also through the students’ research products in network science which include multiple publications and presentations. We believe that COMBINE offers an effective model for integrated interdisciplinary training that can be readily applied in other fields. <br> <br>
DOI: 10.34740/kaggle/dsv/2509583
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.5281/zenodo.5171103
title: Yavaa - User Survey Results

description: The raw responses excluding personal data, submitted files, and derived attributes from the user survey of Yavaa conducted as part of the PhD thesis.
DOI: 10.5281/zenodo.5171102
title: Yavaa - User Survey Results

description: The raw responses excluding personal data, submitted files, and derived attributes from the user survey of Yavaa conducted as part of the PhD thesis.
DOI: 10.6084/m9.figshare.15132138.v1
title: figure10

description: data for reproducing figure 10
DOI: 10.6084/m9.figshare.15132138
title: figure10

description: data for reproducing figure 10
DOI: 10.6084/m9.figshare.15132003
title: figure9

description: Data needed to reproduce Figure 9
DOI: 10.6084/m9.figshare.15132003.v1
title: figure9

description: Data needed to reproduce Figure 9
DOI: 10.15468/cq3ty9
title: Nueva especie de Conognatha Eschscholtz (Coleoptera: Buprestidae) de Brasil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pineda, Cristian, Barros, Rafael (2017): Nueva especie de Conognatha Eschscholtz (Coleoptera: Buprestidae) de Brasil. Insecta Mundi 2017 (546): 1-4, DOI: http://doi.org/10.5281/zenodo.5171080
DOI: 10.6084/m9.figshare.13067049
title: The cytoplasmic SYNCRIP mRNA interactome of mammalian neurons

description: SYNCRIP, a member of the cellular heterogeneous nuclear ribonucleoprotein (hnRNP) family of RNA binding proteins, regulates various aspects of neuronal development and plasticity. Although SYNCRIP has been identified as a component of cytoplasmic RNA granules in dendrites of mammalian neurons, only little is known about the specific SYNCRIP target mRNAs that mediate its effect on neuronal morphogenesis and function. Here, we present a comprehensive characterization of the cytoplasmic SYNCRIP mRNA interactome using iCLIP in primary rat cortical neurons. We identify hundreds of <i>bona fide</i> SYNCRIP target mRNAs, many of which encode for proteins involved in neurogenesis, neuronal migration and neurite outgrowth. From our analysis, the stabilization of mRNAs encoding for components of the microtubule network, such as doublecortin (Dcx), emerges as a novel mechanism of SYNCRIP function in addition to the previously reported control of actin dynamics. Furthermore, we found that SYNCRIP synergizes with pro-neural miRNAs, such as miR-9. Thus, SYNCRIP appears to promote early neuronal differentiation by a two-tier mechanism involving the stabilization of pro-neural mRNAs by direct 3ʹUTR interaction and the repression of anti-neural mRNAs in a complex with neuronal miRISC. Together, our findings provide a rationale for future studies investigating the function of SYNCRIP in mammalian brain development and disease.