cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3657896_d1.v1
title: Additional file 1: of Development and evaluation of a diagnostic cytokine-release assay for Mycobacterium suricattae infection in meerkats (Suricata suricatta)

description: IP-10 release in whole blood from Mycobacterium suricattae-unexposed meerkats (Control Group) and meerkats with a low risk (Category 1), moderate risk (Category 2) and high risk (Category 3) of infection with this pathogen. Blood was incubated at 37Â Â°C for 24Â h with phosphate buffered saline (Nil), Bovigam PC-HP peptides (HP) and pokeweed mitogen (PWM). The HP-specific (HP-Nil) and PWM-specific (PWM-Nil) IP-10 release was calculated by subtracting the Nil value from the HP and PWM values, respectively. (XLSX 21 kb)
DOI: 10.15468/dl.5u5fwa
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038030-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3657896_d1
title: Additional file 1: of Development and evaluation of a diagnostic cytokine-release assay for Mycobacterium suricattae infection in meerkats (Suricata suricatta)

description: IP-10 release in whole blood from Mycobacterium suricattae-unexposed meerkats (Control Group) and meerkats with a low risk (Category 1), moderate risk (Category 2) and high risk (Category 3) of infection with this pathogen. Blood was incubated at 37Â Â°C for 24Â h with phosphate buffered saline (Nil), Bovigam PC-HP peptides (HP) and pokeweed mitogen (PWM). The HP-specific (HP-Nil) and PWM-specific (PWM-Nil) IP-10 release was calculated by subtracting the Nil value from the HP and PWM values, respectively. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3657920_d1.v1
title: Additional file 8: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Novel miRNA mature sequences identified in High Motile (HM) and Low Motile (LM) sperm fractions. (FA 12Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d4.v1
title: Additional file 2: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Putative piRNA clusters that were assigned by proTRAC to the High Motile (HM) and Low Motile (LM) sperm fractions. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d4
title: Additional file 2: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Putative piRNA clusters that were assigned by proTRAC to the High Motile (HM) and Low Motile (LM) sperm fractions. (XLSX 21Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d5.v1
title: Additional file 7: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Novel miRNA precursors sequences identified in High Motile (HM) and Low Motile (LM) sperm fractions. (FA 25Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d5
title: Additional file 7: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Novel miRNA precursors sequences identified in High Motile (HM) and Low Motile (LM) sperm fractions. (FA 25Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d6.v1
title: Additional file 9: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: piRNA clusters identify in High Motile (HM) and Low Motile (LM) sperm fractions. (FASTA 1073Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d6
title: Additional file 9: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: piRNA clusters identify in High Motile (HM) and Low Motile (LM) sperm fractions. (FASTA 1073Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d7.v1
title: Additional file 6: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Differentially expressed miRNAs between the High Motile (HM) and Low Motile (LM) spermfractions calculated with the Bioconductor edgeR package. (XLSX 70Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d8.v1
title: Additional file 3: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Details for each piRNA clusters found in High Motile (HM) sperm fraction. Genes, repeats, transposable elements and transcription factors binding sites falling within the cluster regions were reported. (ZIP 1896Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d7
title: Additional file 6: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: Differentially expressed miRNAs between the High Motile (HM) and Low Motile (LM) spermfractions calculated with the Bioconductor edgeR package. (XLSX 70Â kb)
DOI: 10.6084/m9.figshare.c.3657920_d9.v1
title: Additional file 5: of Small RNA sequencing of cryopreserved semen from single bull revealed altered miRNAs and piRNAs expression between High- and Low-motile sperm populations

description: miRNAs detected in High Motile (HM) and Low Motile (LM) sperm fraction by Mirdeep2. Normalized read counts were reported for each bull (Bull1, Bull2, Bull3, Bull4) and replicate (a, b, c). (XLSX 140Â kb)
DOI: 10.6084/m9.figshare.c.3658820_d3.v1
title: Additional file 1: of Genotype variation and genetic relationship among Escherichia coli from nursery pigs located in different pens in the same farm

description: CFU/g of E. coli in the fecal samples of pigs. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3658829_d2.v1
title: Additional file 2: Table S1. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

description: HiC-bench task implementation. The table summarizes how the pipeline tasks are implemented, which are the requirements for their execution and how they are handled by the pipeline-master-explorer script. The first column lists all the tasks performed by the pipeline ranging from alignment to annotation. The second column lists the input directory required for each task while the third one lists the parameter files. Certain tasks depend on the reference genome (human or mouse), thus the genome assembly acts as split variable (column 4). In some tasks, replicates can be grouped using the group variable (column 5). Pairwise comparisons between replicates or samples are also allowed using tuples (column 6). The last column lists the full pipeline-master-explorer command for each pipeline task. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658820_d3
title: Additional file 1: of Genotype variation and genetic relationship among Escherichia coli from nursery pigs located in different pens in the same farm

description: CFU/g of E. coli in the fecal samples of pigs. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3658829_d2
title: Additional file 2: Table S1. of HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

description: HiC-bench task implementation. The table summarizes how the pipeline tasks are implemented, which are the requirements for their execution and how they are handled by the pipeline-master-explorer script. The first column lists all the tasks performed by the pipeline ranging from alignment to annotation. The second column lists the input directory required for each task while the third one lists the parameter files. Certain tasks depend on the reference genome (human or mouse), thus the genome assembly acts as split variable (column 4). In some tasks, replicates can be grouped using the group variable (column 5). Pairwise comparisons between replicates or samples are also allowed using tuples (column 6). The last column lists the full pipeline-master-explorer command for each pipeline task. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658847_d1.v1
title: Additional file 3: Tables S3. of Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica

description: PCA loadings for the first three axes for each trait (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3658850_d1.v1
title: Additional file 1: Computer spreadsheet containing data from all studies. of Short term storage stability at room temperature of two different platelet-rich plasma preparations from equine donors and potential impact on growth factor concentrations

description: (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3658847_d1
title: Additional file 3: Tables S3. of Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica

description: PCA loadings for the first three axes for each trait (CSV 1 kb)
DOI: 10.6084/m9.figshare.c.3658850_d1
title: Additional file 1: Computer spreadsheet containing data from all studies. of Short term storage stability at room temperature of two different platelet-rich plasma preparations from equine donors and potential impact on growth factor concentrations

description: (XLSX 23 kb)
DOI: 10.15468/dl.m28ymw
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Espadarana andina (Rivero, 1968))"
 ]
}

 The dataset includes 156 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038032-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3658919_d1
title: Additional file 1: Table S1. of Plasma presepsin level is an early diagnostic marker of severe febrile neutropenia in hematologic malignancy patients

description: Plasma presepsin level change over time compared with CRP in FN group (cases 1â  11) and AFN group (cases 12â  15). (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3658922_d1.v1
title: Additional file 1: of Non-dialysis dependent chronic kidney disease is associated with high total and out-of-pocket healthcare expenditures

description: Relevant Stata commands used in the study available in a Stata commands â  doâ   file. (DO 12 kb)
DOI: 10.6084/m9.figshare.c.3658916_d2.v1
title: Additional file 2: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Observation raw data total numbers. (SAV 806 kb)
DOI: 10.6084/m9.figshare.c.3658922_d1
title: Additional file 1: of Non-dialysis dependent chronic kidney disease is associated with high total and out-of-pocket healthcare expenditures

description: Relevant Stata commands used in the study available in a Stata commands â  doâ   file. (DO 12 kb)
DOI: 10.15468/dl.z6dtyv
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038033-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3658916_d2
title: Additional file 2: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Observation raw data total numbers. (SAV 806 kb)
DOI: 10.6084/m9.figshare.c.3658916_d3.v1
title: Additional file 5: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Alcoholic handrub. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658916_d3
title: Additional file 5: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Alcoholic handrub. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3658916_d4.v1
title: Additional file 4: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Perception survey. (SAV 54 kb)
DOI: 10.6084/m9.figshare.c.3658916_d4
title: Additional file 4: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: Perception survey. (SAV 54 kb)
DOI: 10.6084/m9.figshare.c.3658916_d5.v1
title: Additional file 1: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: HCWs perception. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3658916_d5
title: Additional file 1: of Implementation of the WHO multimodal Hand Hygiene Improvement Strategy in a University Hospital in Central Ethiopia

description: HCWs perception. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3658955_d1
title: Additional file 1: of KinMap: a web-based tool for interactive navigation through human kinome data

description: (KinMap_Examples.zip) contains the input CSV files used to generate the annotated kinome trees in Fig. 1 (Example_1_Erlotinib_NSCLC.csv), Fig. 2a (Example_2_Sunitinib_Sorafenib_Cancer.csv), and Fig. 2b (Example_3_Kinase_Stats.csv). (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3658955_d1.v1
title: Additional file 1: of KinMap: a web-based tool for interactive navigation through human kinome data

description: (KinMap_Examples.zip) contains the input CSV files used to generate the annotated kinome trees in Fig. 1 (Example_1_Erlotinib_NSCLC.csv), Fig. 2a (Example_2_Sunitinib_Sorafenib_Cancer.csv), and Fig. 2b (Example_3_Kinase_Stats.csv). (ZIP 5 kb)
DOI: 10.6084/m9.figshare.c.3658991_d1
title: Additional file 1: Table S1. of Correlations between physical activity and neurocognitive domain functions in patients with schizophrenia: a cross-sectional study

description: The correlation among Demographics, Psychiatric symptoms, and Neurocognitive functions in inpatients group (n = 16). Table S2. The correlation among Demographics, Psychiatric symptoms, and Neurocognitive functions in outpatients group (n = 13). (XLSX 26 kb)
DOI: 10.5281/zenodo.14510756
title: El Verde Summer 2024 Anolis-Malaria and Transect Data

description: This dataset gathers morphometric, microhabitat, and distance sampling data for Anolis lizards endemic to the island of Puerto Rico. This data was collected within the Luquillo Forest Dynamics Plot (LFDP) during the Summer 2024 field season as part of a long-term project. Data from this project has been used to explore patterns of disturbance and recovery, recolonization, and infection dynamics with particular emphasis on Anolis gundlachi as a study system.
DOI: 10.5281/zenodo.14510757
title: El Verde Summer 2024 Anolis-Malaria and Transect Data

description: This dataset gathers morphometric, microhabitat, and distance sampling data for Anolis lizards endemic to the island of Puerto Rico. This data was collected within the Luquillo Forest Dynamics Plot (LFDP) during the Summer 2024 field season as part of a long-term project. Data from this project has been used to explore patterns of disturbance and recovery, recolonization, and infection dynamics with particular emphasis on Anolis gundlachi as a study system.
DOI: 10.15468/dl.ykf2ms
title: Occurrence Download

description: A dataset containing 22959 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zerene cesonia (Stoll, 1790)"
 ]
}

 The dataset includes 22959 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038034-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvekf9
title: Occurrence Download

description: A dataset containing 3372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parambassis siamensis (Fowler, 1937), Pristolepis fasciata (Bleeker, 1851), Esomus metallicus Ahl, 1923)",
 "Year is not null",
 {
 "not" : {
 "Issue" : [
 "is one of (Recorded date invalid, Taxon match fuzzy, Taxon match higher rank)"
 ]
 }
 }
 ]
}

 The dataset includes 3372 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038036-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3659024_d1
title: Additional file 1: of Demographic profile and pattern of fatal injuries in Nairobi, Kenya, Januaryâ  June 2014

description: Fatal Injuries data_final. (XLS 2611 kb)
DOI: 10.25919/xva1-wz02
title: Parkes observations for project P1337 semester 2024OCTS_01

description: For spider pulsars, the companion is evaporated by the pulsar winds and high-energy emissions, causing material to be blown from the companion, which can result in radio eclipses. Radio observations of these eclipses are key to understanding the properties of the eclipse medium. In this proposal, we aim to study the eclipse phenomena of spider pulsars using the UWL receiver at the Parkes telescope. We have three goals: (a) measure the duration of eclipse across a wide bandwidth. We will study the frequency dependence of the eclipse and analyze the eclipse mechanisms at different observational frequencies, (b) study the depolarization of linear polarization. The depolarization of spider pulsars is proposed to be caused by multipath propagation, where the degree of depolarization is expected to be proportional to $\exp(f^{-4})$. The UWL observations will allow us to examine this method across a wide bandwidth for the first time, (c) measure dispersion measure (DM) variation at the eclipse boundary. The UWL observations will enable us to measure the DM variation more accurately at the eclipse boundary. This will allow us to estimate the mass loss rate of the companion, providing a timescale over which the companion will be completely destroyed.
DOI: 10.6084/m9.figshare.c.3659030_d1.v1
title: Additional file 4: Figure S2. of Case report: whole exome sequencing of primary cardiac angiosarcoma highlights potential for targeted therapies

description: Chromosome 1 copy number plot outputs illustrating 1q32 amplification. Plots represent outputs from (2A upper panel) LOH and allelic imbalance analysis, and (2A lower panel) copy number analysis. 2A upper panel, chromosome 1 plot with map position in megabases on the X-axis, and the B-allele frequency (BAF) on the Y-axis revealing chromosomal allelic imbalances. 2A lower panel, chromosome 1 plot with map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. 2B shows 10 megabase zoomed region of chromosome 1 (1q32) amplicon. 2B upper panel, chromosome 1 zoomed in plot with map position in megabases on the X-axis, and the B-allele frequency (BAF) on the Y-axis revealing chromosomal allelic imbalance at this region. 2B lower panel, chromosome 1 zoomed in plot with map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. The map postion related to the MDM4 gene locus is depicted as a purple line on each plot. (ZIP 1288Â kb)
DOI: 10.6084/m9.figshare.c.3659036_d1.v1
title: Additional file 2: of LPS-induced modules of co-expressed genes in equine peripheral blood mononuclear cells

description: Data used for the analysis in R. An RData file that contains compressed objects required for the differential expression and co-expression analyses with the script from Additional file 1. It contains the count and design tables. (RDATA 2007Â kb)
DOI: 10.6084/m9.figshare.c.3659036_d1
title: Additional file 2: of LPS-induced modules of co-expressed genes in equine peripheral blood mononuclear cells

description: Data used for the analysis in R. An RData file that contains compressed objects required for the differential expression and co-expression analyses with the script from Additional file 1. It contains the count and design tables. (RDATA 2007Â kb)
DOI: 10.6084/m9.figshare.c.3659030_d1
title: Additional file 4: Figure S2. of Case report: whole exome sequencing of primary cardiac angiosarcoma highlights potential for targeted therapies

description: Chromosome 1 copy number plot outputs illustrating 1q32 amplification. Plots represent outputs from (2A upper panel) LOH and allelic imbalance analysis, and (2A lower panel) copy number analysis. 2A upper panel, chromosome 1 plot with map position in megabases on the X-axis, and the B-allele frequency (BAF) on the Y-axis revealing chromosomal allelic imbalances. 2A lower panel, chromosome 1 plot with map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. 2B shows 10 megabase zoomed region of chromosome 1 (1q32) amplicon. 2B upper panel, chromosome 1 zoomed in plot with map position in megabases on the X-axis, and the B-allele frequency (BAF) on the Y-axis revealing chromosomal allelic imbalance at this region. 2B lower panel, chromosome 1 zoomed in plot with map position in megabases on the X-axis, and the log2 fold change ratio information on the Y-axis. The map postion related to the MDM4 gene locus is depicted as a purple line on each plot. (ZIP 1288Â kb)
DOI: 10.6084/m9.figshare.c.3659033_d1.v1
title: Additional file 1: of Evolutionary diversification of Pseudomonas aeruginosa in an artificial sputum model

description: Phenotypic data from this study. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.c.3659033_d1
title: Additional file 1: of Evolutionary diversification of Pseudomonas aeruginosa in an artificial sputum model

description: Phenotypic data from this study. (XLSX 139Â kb)
DOI: 10.6084/m9.figshare.c.3659036_d2.v1
title: Additional file 4: of LPS-induced modules of co-expressed genes in equine peripheral blood mononuclear cells

description: Lists of DEGs between LPS stimulated and unstimulated PBMCs. For every effect studied (LPS, and interaction effects: LPS:Fam1, LPS:Fam2) the list of genes differentially expressed at false discovery rate
DOI: 10.6084/m9.figshare.c.3659033_d2.v1
title: Additional file 2: of Evolutionary diversification of Pseudomonas aeruginosa in an artificial sputum model

description: Antimicrbial susceptibility data and data for beta-lactamase production. (XLSX 18Â kb)
DOI: 10.15468/dl.5q4jca
title: Occurrence Download

description: A dataset containing 18565 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fungal Internal Transcribed Spacer RNA (ITS) RefSeq Targeted Loci Project"
 ]
}

 The dataset includes 18565 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038035-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.