cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.12jm63xtr
title: Invasive zebra mussel (Dreissena polymorpha) threatens an exceptionally large population of the depressed river mussel (Pseudanodonta complanata) in a postglacial lake

description: Freshwater mussels are in decline worldwide, with the depressed river
 mussel Pseudanodonta complanata being one of the rarest and most
 endangered species in Europe. Invasive mussels are suspected to be an
 important factor of decline, but there is little information on their
 interaction with native species. This study analysed densities, depth
 distribution and individual sizes and weights in one of the largest known
 populations of P. complanata in Europe in relation to the co-occurring
 invasive zebra mussel Dreissena polymorpha and other mussel species, using
 a systematic transect analysis. P. complanata was the dominant unionid
 species in Lake Siecino reaching densities of up to 26 ind. m-2, with half
 of the specimens found at a water depth of 2.0 – 4.0 m. Densities were
 highest on sandy substrates in areas of underwater currents. In contrast,
 67% of native U. tumidus were found at depths &lt; 1 m, indicating
 different habitat preference.  In the study area, 91% of P.
 complanata, 92% of U. tumidus and all Anodonta individuals were fouled by
 D. polymorpha. The dreissenid:unionid mass-ratio (mean ± SD; maximum) was
 0.43 ± 0.56; 22 and 0.86 ± 1.87; 8.76 in P. complanata and U. tumidus,
 respectively. P. complanata fouled with D. polymorpha were impaired in
 their anchoring capability and had shell deformations potentially
 affecting shell closing and filtration activity. Fouling intensity was
 negatively correlated with unionid density, potentially leading to
 accelerated population declines. The observed adverse effects of invasive
 zebra mussels on the depressed river mussel and the difficulties in
 eradicating established populations of invasive mussels suggest that D.
 polymorpha should be considered a serious threat to P. complanata.
 Therefore, the further spread of zebra mussels into habitats with native
 unionids needs to be avoided by all means.
description: SI Table 1. Data on individual mussels in study sites S1 - S5.
 Aa, Anodonta anatina; Ac, Anodonta cygnea; Pc, Pseudanodonta complanata;
 Ut, Unio tumidus; Depth, water depth at which the mussel was collected;
 Mass, total wet mass (body and shell); Mass_Dp, mass of D. polymorpha
 attached to the unionid
DOI: 10.5061/dryad.k3j9kd548
title: Pain in patients with Type 2 diabetes-related polyneuropathy is associated with vascular events and mortality

description: Type 2 diabetes–related polyneuropathy (DPN) is associated with increased
 vascular events and mortality, but determinants and outcomes of pain in
 DPN are poorly understood. We sought to examine the effect of neuropathic
 pain on vascular events and mortality in patients without DPN, DPN with
 pain (DPN + P), and DPN without pain (DPN-P). A retrospective cohort study
 was conducted within a large health system of adult patients with type 2
 diabetes from January 1, 2009 through December 31, 2016. Using an
 electronic algorithm, patients were classified as no DPN, DPN + P, or
 DPN-P. Primary outcomes included number of vascular events and time to
 mortality. Independent associations with DPN + P were evaluated using
 multivariable negative binomial and Cox proportional hazards regression
 models, adjusting for demographics, socioeconomic characteristics, and
 comorbidities. Of 43 945 patients with type 2 diabetes (age 64.6 ± 14.0
 years; 52.1% female), 13 910 (31.7%) had DPN: 9104 DPN + P (65.4%) vs 4806
 DPN-P (34.6%). Vascular events occurred in 4538 (15.1%) of no DPN
 patients, 2401 (26.4%) DPN + P, and 1006 (20.9%) DPN-P. After adjustment,
 DPN + P remained a significant predictor of number of vascular events
 (incidence rate ratio [IRR] = 1.55, 95% CI, 1.29-1.85), whereas no DPN was
 protective (IRR = 0.70, 95% CI, 0.60-0.82), as compared to DPN-P. Compared
 to DPN-P, DPN + P was also a significant predictor of mortality (hazard
 ratio = 1.42, 95% CI, 1.25-1.61). Our study found a significant
 association between pain in DPN and an increased risk of vascular events
 and mortality. This observation warrants longitudinal study of the risk
 factors and natural history of pain in DPN.  
description: A retrospective cohort study was conducted including adult
 patients (age ≥ 18 years) with a diagnosis of type 2 diabetes within the
 study period of January 1, 2009 through December 31, 2016, living in the
 Cuyahoga and the surrounding 7-county region, and seen within the
 Cleveland Clinic system at least once within the 8-year study period.
 Patients with type 1 diabetes were excluded. Data were extracted from the
 enterprisewide electronic health record (EHR) at Cleveland Clinic (Epic
 Verona, Wisconsin).
DOI: 10.5061/dryad.15dv41ntn
title: Termite males enhance mating encounters by changing speed according to density

description: Search theory predicts that animals evolve efficient movement patterns to
 enhance encounter rates with specific targets. The optimal movements vary
 with the surrounding environments, which may explain the observation that
 animals often switch their movement patterns depending on conditions.
 However, the effectiveness of behavioral change during search is rarely
 evaluated because it is difficult to examine the actual encounter
 dynamics. Here we studied how partner-seeking termites update their search
 strategies depending on the local densities of potential mates. After a
 dispersal flight, termites drop their wings and walk to search for a mate;
 when a female and a male meet, they form a female-led tandem pair and
 search for a favorable nesting site. If a pair is separated, they have two
 search options: reunite with their stray partner, or seek a new partner.
 We hypothesized that the density of individuals affects separation-reunion
 dynamics and thus the optimal search strategy. We observed the searching
 process across different densities and found that termite pairs were often
 separated but obtained a new partner quickly at high mate density. After
 separation, while females consistently slowed down, males increased their
 speed according to the density. Under high mate density, separated males
 obtained a partner earlier than females, who do not change movement with
 density. Our data-based simulations confirmed that the observed behavioral
 change by males contributes to enhancing encounters. Males at very low
 mate densities did best to move slowly and thereby reduce the risk of
 missing their stray partner, who is the only available mate. On the other
 hand, males that experienced high mate densities did better in mating
 encounters by moving fast because the risk of isolation is low, and they
 must compete with other males to find a partner. These results demonstrate
 that termite males adaptively update their search strategy depending on
 conditions. Understanding the encounter dynamics experienced by animals is
 key to connecting empirical work to the idealized search processes of
 theoretical studies.
description: All location data was extracted from video file using
 UMATracker (Yamanaka & Takeuchi, 2018) and then processed so that
 unit is mm, time is second (5 frames per second), and .rdata format. Using
 Analyze.R source code, you can get the same figure with the main results.
 The code for simulations is also uploaded.
DOI: 10.82294/dvnvggsqy
title: Observaciones semiestructuradas. Territorio: Cundinamarca. Eje medular: Corporalidad. Sector: Cultura. Año: 2025

description: La corporalidad se concibe como una dimensión dinámica y multidimensional que trasciende lo biológico para integrar aspectos históricos, sociales y políticos. En el campo de la educación artística, constituye el medio esencial para percibir, actuar y pensar, pues a través del cuerpo se expresan discursos creativos, se experimenta el mundo desde la sensibilidad y se construyen vínculos afectivos y colectivos. Al mismo tiempo, la corporalidad funciona como un espacio de reflexión y conciencia, favoreciendo el autoconocimiento, el cuidado de sí y la transformación personal.
DOI: 10.5061/dryad.zw3r2285c
title: Data from: Inbreeding shapes the evolution of marine invertebrates

description: Inbreeding is a potent evolutionary force shaping the distribution of
 genetic variation within and among populations of plants and animals. Yet,
 our understanding of the forces shaping the expression and evolution of
 non-random mating in general, and inbreeding in particular, remains
 remarkably incomplete. Most research on plant mating systems focuses on
 self-fertilization and its consequences for automatic selection,
 inbreeding depression, purging, and reproductive assurance, whereas
 studies of animal mating systems have often assumed that inbreeding is
 rare, and that natural selection favors traits that promote outbreeding.
 Given that many sessile and sedentary marine invertebrates and marine
 macroalgae share key life-history features with seed plants (e.g., low
 mobility, modular construction, and the release of gametes into the
 environment), their mating systems may be similar. Here, we show that
 published estimates of inbreeding coefficients (FIS) for sessile and
 sedentary marine organisms are similar and at least as high as noted in
 terrestrial seed plants. We also found that variation in FIS within
 invertebrates is related to the potential to self-fertilize, disperse, and
 choose mates. The similarity of FIS for these organismal groups suggests
 that inbreeding could play a larger role in the evolution of sessile and
 sedentary marine organisms than is currently recognized. Specifically,
 associations between traits of marine invertebrates and FIS suggest that
 inbreeding could drive evolutionary transitions between hermaphroditism
 and separate sexes, direct development and multiphasic life cycles, and
 external and internal fertilization.
description: Species mean and population-level
 <em>F<sub>IS</sub></em>. Published estimates
 of <em>F<sub>IS</sub></em> were collected from the
 primary literature.
DOI: 10.5061/dryad.kd51c5b2s
title: Data from: The effect of urban habitat use on parasitism in mammals: a meta-analysis

description: Rates of urbanization are increasing globally, with potential consequences
 for the dynamics of parasites and their wildlife hosts. A small subset of
 mammal species have the dietary and behavioural flexibility to survive in
 urban settings. The changes that characterize urban ecology – including
 landscape transformation, modified diets, and shifts in community
 composition – can either increase or decrease susceptibility and exposure
 to parasites. We used a meta-analytic approach to systematically assess
 differences in endoparasitism between mammals in urban and non-urban
 habitats. Parasite prevalence estimates in matched urban and non-urban
 mammal populations from 33 species were compiled from 46 published
 studies, and an overall effect of urban habitation on parasitism was
 derived after controlling for study and parasite genus. Parasite life
 cycle type and host order were investigated as moderators of the effect
 sizes. We found that parasites with complex life cycles were less
 prevalent in urban carnivore and primate populations than in non-urban
 populations. However, we found no difference in urban and non-urban
 prevalence for parasites in rodent and marsupial hosts, nor differences in
 prevalence for parasites with simple life cycles in any host taxa. Our
 findings therefore suggest the disruption of some parasite transmission
 cycles in the urban ecological community.
DOI: 10.5061/dryad.5qfttdz24
title: Constitutive model of erythrocyte membranes with distributions of spectrin orientations and lengths - pipette aspiration data and MatLab Code

description: The speadsheet contains the original micropipette aspiration measurement
 of red blood cell membrane.  There are five days of experiment
 each on its own tab, the first three of which are reported in the
 manuscript.  The MatLab code used to generate theoretical
 predictions based on our new microstructurebased constitutive model are
 also included.   This is the code used to generate least
 squared regression values for the material coefficients.
description: The projection
 length of a portion of the red cell membrane aspirated into a micropipette
 was measured as a function of the aspiration pressure.  Measurements were
 obtained on five different days using large (~0.85 mm inside diameter) and
 small (~0.56 mm inside diameter) micropipettes.  Cells were obtained from
 human donors by simple finger stick under a protocol approved by the
 Office of Human Subject Protection at the University of Rochester.  Cells
 were suspended in phosphate buffered saline with 4% v/v of fetal bovine
 serum to avoid attachments between the cells and glass surfaces. 
 Micropipettes were formed from glass capillaries using a Kopf
 microelectrode puller and a custom-made microforge.  Micropipettes were
 filled with buffer matching the cell suspension buffer by capillarity,
 then connected via a continuous, bubble-free water pathway to a
 water-filled manometer. Zero pressure was set by adjusting the height of
 the manometer reservoir until suspended particles were motionless in the
 pipette lumen.  Aspiration pressures were applied by adjusting the height
 of the reservoir using a micrometer with a resolution of 0.01 mm.  Cells
 were observed using an inverted microscope with a 100x oil immersion
 objective and monochromatic illumination (480 nm).  The experiments were
 recorded using standard video and the length of the projection as a
 function of aspiration pressure was measured from the recordings.  For
 each day of experiments approximately eight cells were measured using the
 same pressure sequence, and the projection lengths at each pressure were
 averaged.  There was some variability in the pressures applied for
 different cells, so the exact number of points used to construct average
 values and standard deviations varies slightly from experiment to
 experiment.  This is evident from the spreadsheets.
description: For the MatLab code, the main script file for performing least
 squared regressions is DoMuMatchFitLSQRd.  The DoOnceThrough series of
 scripts was used to generate individual figures.  b_vs_Lmax_fit fits the
 best fit pairs of values for different values of smax to a functinal
 relationship defined in Fig. 7 of the paper.  Code for generating
 individual figures is indicated by the figure number.
DOI: 10.5061/dryad.qjq2bvqcc
title: Data from: The weekend intensive

description: Traditionally, counselor education instruction has taken place in the
 face-to-face format. However, with the shift toward online learning, more
 counselor education programs are incorporating distance education into the
 curriculum. This study is an examination of skills acquisition and
 comparison of students enrolled in introductory counseling skills courses
 in an online counselor education program. The courses were delivered
 online with brief face-to-face meetings in two different formats: four
 consecutive days or two separate weekends. Results indicated no
 significant differences in student counseling skill acquisition between
 the two hybrid formats. Students in both courses demonstrated skills at
 basic mastery levels.
DOI: 10.5061/dryad.d51c59zzt
title: Data for: Parasitism risk and infection alter host dispersal

description: Dispersal determines the spatial dynamics of host-parasite assemblages,
 particularly during invasions and disease epidemics. The risk of
 parasitism may create an incentive for dispersal, but infection is
 expected to reduce dispersal ability, which may alter the host’s dispersal
 response to biotic stressors including population density. We measured the
 dispersal of the semi-aquatic insect, Notonecta undulata, in aquatic
 mesocosms in which we manipulated the presence of ectoparasitic
 Hydrachnidia mites and of infected conspecifics. We found that parasitism
 risk increases host dispersal propensity. Using a flight assay, we
 determined that parasite infection reduces host dispersal ability.
 Finally, we used a mark-release-recapture study to investigate the joint
 effects of both parasitism risk and parasite infection on host dispersal
 in a natural, spatially structured population. We found that parasitism
 risk reduced dispersal probability, eliminated positive density-dependent
 dispersal, and increased dispersal distance. Infection had no effect on
 dispersal in the natural population. Our results show that parasites can
 both increase and decrease the movement rates of their hosts, depending on
 the ecological context, and can alter the host’s dispersal response to
 other biotic stressors. Future studies should consider the consequences of
 this double-headed impact of parasites for landscape connectivity,
 population persistence, and host-parasite coevolution.
description: Methods described in Baines, Diab, & McCauley. Parasitism
 risk and infection alter host dispersal. <em>In
 Press </em>at <em>The American
 Naturalist.</em>
description: Description of column headings are available in three ReadMe
 files: READ ME_experiment 1 READ
 ME_experiment 2 READ ME_MRR data
DOI: 10.5061/dryad.31zcrjdh5
title: Opposing fitness consequences of habitat use in a harvested moose population

description: 1. Landscape changes are happening at an unprecedented pace, and together
 with high levels of wildlife harvesting humans have a large effect on
 wildlife populations. A thorough knowledge of their combined influence on
 individual fitness is important in order to understand factors affecting
 population dynamics. 2. The goal of the study was to assess the individual
 consistency in the use of risky habitat types, and how habitat use was
 related to fitness components and life-history strategies. 3. Using data
 from a closely monitored and harvested population of moose (Alces alces),
 we examined how individual variation in offspring size, reproduction, and
 survival was related to the use of open grasslands; a habitat type that
 offers high-quality forage during summer, but at the cost of being more
 exposed to hunters in autumn. Use of this habitat type may therefore
 involve a trade-off between high mortality risk and forage maximization.
 4. There was high repeatability in habitat use, which suggest consistent
 behaviour within individuals. Offspring number and weight was positively
 related to the mothers’ use of open grasslands, whereas the probability of
 surviving the subsequent harvest season was negatively related to the use
 of the same habitat type. As a consequence, we found a non-significant
 relationship between habitat use and lifetime fitness. 5. The study
 suggest that harvesting, even if intended to be nonselective with regard
 to phenotypes, may be selective towards animals with specific behaviour
 and life-history strategies. As a consequence, harvesting can alter the
 life-history composition of the population and target life-history
 strategies that would be beneficial for individual fitness and population
 growth in the absence of hunting.
description: Data was collected through annual events of marking and hunting.
 Marking including collaring individuals with GPS collars which collected
 data until battery failure. Data consists of individual-level summary
 statistics per season-year on life history variables and habitat
 use.
DOI: 10.5061/dryad.bcc2fqz8g
title: Smaller brained cliff swallows are more likely to die during harsh weather

description: The cognitive-buffer hypothesis proposes that more harsh and unpredictable
 environments favor animals with larger brains and resulting greater
 cognitive skills.  Comparisons across taxa have supported the
 hypothesis, but it has rarely been tested within a species.  We
 measured brain size, as inferred from head dimensions, for 1141 cliff
 swallow specimens collected in western Nebraska, 1982-2018. 
 Cliff swallows starving to death during unusual late-spring cold snaps had
 significantly smaller brains than those dying from other causes,
 suggesting that brain size in this species can affect foraging success and
 that greater cognitive ability may confer advantages when conditions
 exceed normal environmental extremes.  Brain size declined
 significantly with the size of the breeding colony from which a specimen
 came.  Larger brains may be favored in smaller colonies that
 represent more unpredictable and more challenging social environments
 where there is less public information on food sources and less collective
 vigilance against predators. Our results provide intraspecific
 support for the cognitive-buffer hypothesis and emphasize the potential
 evolutionary impact of rare climatic events.
DOI: 10.5061/dryad.cjsxksn2x
title: Dynamics of heavy chain junctional length biases in antibody repertoires

description: Antibody variable domain sequence diversity is generated by recombination
 of germline segments. The third complementarity-determining region of the
 heavy chain (CDR H3) is the region of highest sequence diversity and is
 formed by the joining of heavy chain VH, DH and JH germline segments
 combined with random nucleotide trimming and additions between these
 segments. We show that CDR H3 length distribution is biased in human
 antibody repertoires as a function of VH, VL and JH germline segment
 utilization. Most length biases are apparent in the naïve B cell
 compartment, with a significant bias towards shorter CDR H3 sequences
 observed in association with a subset of VH and VL germlines in the
 antigen experienced compartment. Similar biases were not observed in
 nonproductive heavy chain recombination products, indicating selection of
 the repertoire during B cell maturation as a major driver of the length
 biases. Some VH-associated CDR H3 length biases are dependent on
 utilization of specific JH germline segments in a manner not directly
 linked to JH segment length in the germline, but are rather associated
 with selection of differentially trimmed JH segments in the naïve
 compartment. In addition, DH segment and N-region random nucleotide
 insertion lengths within CDR H3 in the naïve compartment were also biased
 by specific VH/JH germline combinations, indicating a complex set of
 constraints between germline segments selected during repertoire
 maturation. Our findings reveal biases in the antibody diversity landscape
 shaped by VH, VL, and JH germline features with implications for
 mechanisms of naïve and immune repertoire selection.
description: These are subsets of datasets published by: 1. Goldstein, L. D. et al. Massively parallel single-cell B-cell receptor sequencing enables rapid discovery of diverse antigen-reactive antibodies. <i>Commun Biol</i>2, 304 (2019). 2. Busse, C. Dynamics of the human antibody repertoire after influenza vaccination. NCBI BioProject Database, https://www.ncbi.nlm.nih.gov/bioproject/PRJNA349143 (2016). 3. Laserson, U. et al. High-resolution antibody dynamics of vaccine-induced immune responses. <i>Proc Natl Acad Sci U S A</i>111, 4928-4933 (2014). 4. DeKosky, B. J. et al. In-depth determination and analysis of the human paired heavy- and light-chain antibody repertoire. <i>Nat Med</i>21, 86-91 (2015). 5. DeWitt, W. S. et al. A Public Database of Memory and Naive B-Cell Receptor Sequences. PLoS One 11, e0160853 (2016). 6. Briney, B., Inderbitzin, A., Joyce, C. & Burton, D. R. Commonality despite exceptional diversity in the baseline human antibody repertoire. <i>Nature</i>566, 393-397 (2019) The datasets have been filtered for clonotypes, retaining a single sequence from each clonotype.