cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3426260.v1
title: Altmetric LLP data - NISO Data Metrics report evidence

description: [The following is text from this file's README which describes data exported from Altmetric Explorer and submitted for consideration as part of a public comment on the NISO "data metrics" draft report (NISO RP-25-201x-2A Alternative Outputs in Scholarly Communications--Data Metrics.pdf).]<br><br>Created 1 June 2016<br>For more information, contact support@altmetric.com or visit https://help.altmetric.com/ <br><br>There are three reports included in this bundle:<br><br>1. zenodo_20160601.csv: contains metrics and links to full-text details pages for all online attention that items archived on the Zenodo repository have received from approximately 29 May 2013 to 1 June 2016, as tracked by Altmetric LLP across a variety of social web services [1].<br>2. pangea_20160601.csv: contains metrics and links to full-text details pages containing all online attention that items archived on the Pangea data repository have received from approximately 9 June 2015 to 1 June 2016, as tracked by Altmetric LLP across a variety of social web services [1].<br>3. figshare_dryad_20160601.csv: contains metrics and links to full-text details pages for all online attention that items archived in the figshare and Dryad data repositories have received from approximately 1 January 2012 to 1 June 2016, as tracked by Altmetric LLP across a variety of social web services [1].<br><br>Limitations:<br>- For multipurpose repositories (Zenodo & figshare), some outputs listed in these files may not technically be "data"--they may be white papers, presentations, or other file types. Researchers may wish to contact those repositories or use each repository's API to cross-check and limit their analyses to items designated as "data" or "datasets".<br>- Some data repositories may host “collections” of outputs where both the collection itself and the component outputs have their own DOIs. In these cases the attention collected by Altmetric will be associated with whichever object was linked to by the source of attention.<br>- figshare assigns different DOIs to each version of a dataset. After consulting with them Altmetric associates all attention with the “main” DOI for the dataset (the one without the “v1” “v2” etc. suffix)<br>- Altmetric LLP began collecting altmetrics for research online around 1 January 2012, so most attention seen online will have occurred between 2012 and 1 June 2016, when the above reports were generated.<br><br><br>[1] https://help.altmetric.com/support/solutions/articles/6000060968-what-outputs-and-sources-does-altmetric-track-<br><br>
DOI: 10.6084/m9.figshare.3426182
title: Videos corresponding to migration assay

description: Videos corresponding to the migration assay
DOI: 10.6084/m9.figshare.3426182.v1
title: Videos corresponding to migration assay

description: Videos corresponding to the migration assay
DOI: 10.6084/m9.figshare.3426113
title: Glyphs_biquaternions.pdf

description: Developing an approach defined in previous papers a correspondence between elementary particles and elements of a particular set of directed graphs said "glyphs" is made explicit. These can, in turn, be put in correspondence with a particular set of biquaternions. Charge conjugation and weak isospin inversion then become both topological (on glyphs) and algebraic (on biquaternions) symmetries. The formalism describes leptons and quarks, the latter successfully combined into mesons and baryons. The derivation is possible of both a de Sitter interior spacetime of particles and the usual external Minkowski spacetime. The biquaternions can be related to creation and annihilation operators of the corresponding fermionic fields in Quantum Field Theory (QFT). The base states of QFT and their mutual interactions are thus constrained by their common emergence from logically antecedent structures. This result appears of great importance for the understanding of the elementary particles spectrum
DOI: 10.6084/m9.figshare.3426113.v2
title: Glyphs_biquaternions.pdf

description: Developing an approach defined in previous papers a correspondence between elementary particles and elements of a particular set of directed graphs said "glyphs" is made explicit. These can, in turn, be put in correspondence with a particular set of biquaternions. Charge conjugation and weak isospin inversion then become both topological (on glyphs) and algebraic (on biquaternions) symmetries. The formalism describes leptons and quarks, the latter successfully combined into mesons and baryons. The derivation is possible of both a de Sitter interior spacetime of particles and the usual external Minkowski spacetime. The biquaternions can be related to creation and annihilation operators of the corresponding fermionic fields in Quantum Field Theory (QFT). The base states of QFT and their mutual interactions are thus constrained by their common emergence from logically antecedent structures. This result appears of great importance for the understanding of the elementary particles spectrum
DOI: 10.6084/m9.figshare.3426113.v1
title: Glyphs_biquaternions.pdf

description: Developing an approach defined in previous papers a correspondence between elementary particles and elements of a particular set of directed graphs said "glyphs" is made explicit. These can, in turn, be put in correspondence with a particular set of biquaternions. Charge conjugation and weak isospin inversion then become both topological (on glyphs) and algebraic (on biquaternions) symmetries. The formalism describes leptons and quarks, the latter successfully combined into mesons and baryons. The derivation is possible of both a de Sitter interior spacetime of particles and the usual external Minkowski spacetime. The biquaternions can be related to creation and annihilation operators of the corresponding fermionic fields in Quantum Field Theory (QFT). The base states of QFT and their mutual interactions are thus constrained by their common emergence from logically antecedent structures. This result appears of great importance for the understanding of the elementary particles spectrum
DOI: 10.25442/hku.12858269
title: Supporting data for "Zika virus infection downregulates MHC class I presentation"

description: This data set includes data sets and brief protocols of experiments performed by me. The data include 1. FACS results from ZIKV-infected HMC3 of MHC and functional markers' expressions (also including plaque assay results)2. FACS results from ZIKV-infected U251 of MHC-I (also including plaque assay results)3. Cytokine and growth factor bead-based multiplex results of ZIKV-infected HMC34. FACS results of intracellular staining of MHC-I of ZIKV-infected HMC3 and effect of MG132 proteosomal inhibition5. FACS results from ZIKV-infected A549 and A549 RIG-I KO cells of MHC-I (also including plaque assay results)
DOI: 10.25442/hku.12858269.v1
title: Supporting data for "Zika virus infection downregulates MHC class I presentation"

description: This data set includes data sets and brief protocols of experiments performed by me. The data include 1. FACS results from ZIKV-infected HMC3 of MHC and functional markers' expressions (also including plaque assay results)2. FACS results from ZIKV-infected U251 of MHC-I (also including plaque assay results)3. Cytokine and growth factor bead-based multiplex results of ZIKV-infected HMC34. FACS results of intracellular staining of MHC-I of ZIKV-infected HMC3 and effect of MG132 proteosomal inhibition5. FACS results from ZIKV-infected A549 and A549 RIG-I KO cells of MHC-I (also including plaque assay results)
DOI: 10.6084/m9.figshare.3426068
title: VBORNET gap analysis: Mosquito vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those mosquito species first modelled in 2013 & 2014 as part of the VBORNET gap analysis work. It comprises three species models together with suitability masks based on land class and environmental limits. The species included as part of this phase are, the mosquitoes <i>Aedes vexans, Anopheles plumbeu</i>s and <i>Culex modestus.</i><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Adolfo Ibanez Justicia, Alessandro Albieri, Ana Klobucar, Andrea Mosca, Andreas Krüger, Anita Plenge-Bönig, Carla A. Sousa, Carles Aranda, Didier Fontenille, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francisco Collantes, Gernot Walder, Hakan Kavur, Igor Pajovic, Jacob Beeuwkes, Maria Joao Alves, Mauro Piazzi, Miguel Angel Miranda Chueca, Mikov Ognyan, Milda Zygutiene, Peter Hufnagl, Renato Zamburlini, Roger Eritja, Sandra Gewehr, Tomas Montalvo, Yvon Perrin, Edith Bucher, Ruben Bueno Mari, Katja Kalan, Liviu Prioteasa, Bulent Alten, Filiz Gunay.
DOI: 10.6084/m9.figshare.3426068.v2
title: VBORNET gap analysis: Mosquito vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those mosquito species first modelled in 2013 & 2014 as part of the VBORNET gap analysis work. It comprises three species models together with suitability masks based on land class and environmental limits. The species included as part of this phase are, the mosquitoes <i>Aedes vexans, Anopheles plumbeu</i>s and <i>Culex modestus.</i><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Adolfo Ibanez Justicia, Alessandro Albieri, Ana Klobucar, Andrea Mosca, Andreas Krüger, Anita Plenge-Bönig, Carla A. Sousa, Carles Aranda, Didier Fontenille, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francisco Collantes, Gernot Walder, Hakan Kavur, Igor Pajovic, Jacob Beeuwkes, Maria Joao Alves, Mauro Piazzi, Miguel Angel Miranda Chueca, Mikov Ognyan, Milda Zygutiene, Peter Hufnagl, Renato Zamburlini, Roger Eritja, Sandra Gewehr, Tomas Montalvo, Yvon Perrin, Edith Bucher, Ruben Bueno Mari, Katja Kalan, Liviu Prioteasa, Bulent Alten, Filiz Gunay.
DOI: 10.6084/m9.figshare.3426068.v1
title: VBORNET gap analysis: Mosquito vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those mosquito species first modelled in 2013 & 2014 as part of the VBORNET gap analysis work. It comprises three species models together with suitability masks based on land class and environmental limits. The species included as part of this phase are, the mosquitoes <i>Aedes vexans, Anopheles plumbeu</i>s and <i>Culex modestus.</i><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Adolfo Ibanez Justicia, Alessandro Albieri, Ana Klobucar, Andrea Mosca, Andreas Krüger, Anita Plenge-Bönig, Carla A. Sousa, Carles Aranda, Didier Fontenille, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francisco Collantes, Gernot Walder, Hakan Kavur, Igor Pajovic, Jacob Beeuwkes, Maria Joao Alves, Mauro Piazzi, Miguel Angel Miranda Chueca, Mikov Ognyan, Milda Zygutiene, Peter Hufnagl, Renato Zamburlini, Roger Eritja, Sandra Gewehr, Tomas Montalvo, Yvon Perrin, Edith Bucher, Ruben Bueno Mari, Katja Kalan, Liviu Prioteasa, Bulent Alten, Filiz Gunay.
DOI: 10.6084/m9.figshare.3426065
title: VBORNET gap analysis: Sand fly vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those sandfly species first modelled in 2013 and 2014 as part of the VBORNET gap analysis work. It comprises four species models together with suitability masks based on land class and environmental limits. The species included within this paper are <i>Phlebotomus papatasi, Phlebotomus ariasi, Phlebotomus perniciosus</i> and <i>Phlebotomus tobb</i>i.<br><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Carla A. Sousa, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francis Schaffner, Hakan Kavur, Igor Pajovic, Mikov Ognyan, Milda Zygutiene, Aleksandra Saska, Filiz Gunay, Vladimir Ivovic, Yusuf Ozbel, Ozge Erisoz Kasap, Gizem Oguz, Mehmet Karakus.<br><br>
DOI: 10.6084/m9.figshare.3426065.v2
title: VBORNET gap analysis: Sand fly vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those sandfly species first modelled in 2013 and 2014 as part of the VBORNET gap analysis work. It comprises four species models together with suitability masks based on land class and environmental limits. The species included within this paper are <i>Phlebotomus papatasi, Phlebotomus ariasi, Phlebotomus perniciosus</i> and <i>Phlebotomus tobb</i>i.<br><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Carla A. Sousa, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francis Schaffner, Hakan Kavur, Igor Pajovic, Mikov Ognyan, Milda Zygutiene, Aleksandra Saska, Filiz Gunay, Vladimir Ivovic, Yusuf Ozbel, Ozge Erisoz Kasap, Gizem Oguz, Mehmet Karakus.<br><br>
DOI: 10.6084/m9.figshare.3426065.v1
title: VBORNET gap analysis: Sand fly vector distribution models utilised to identify areas of potential species distribution in areas lacking records.

description: The data package described here includes those sandfly species first modelled in 2013 and 2014 as part of the VBORNET gap analysis work. It comprises four species models together with suitability masks based on land class and environmental limits. The species included within this paper are <i>Phlebotomus papatasi, Phlebotomus ariasi, Phlebotomus perniciosus</i> and <i>Phlebotomus tobb</i>i.<br><i>This data is presented in the Open Health Data Journal.<br></i>Contributors to the VBORNet database that was used to train the models are listed below:Carla A. Sousa, Dusan Petric, Elena Falcuta, Enkelejda Dikolli, Francis Schaffner, Hakan Kavur, Igor Pajovic, Mikov Ognyan, Milda Zygutiene, Aleksandra Saska, Filiz Gunay, Vladimir Ivovic, Yusuf Ozbel, Ozge Erisoz Kasap, Gizem Oguz, Mehmet Karakus.<br><br>
DOI: 10.6084/m9.figshare.3426062
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 16 Jun 2016.<br>Four files are NOT inputs/outputs of quantum chemical computations:<br>- docking.tar, which contains the results of AutoDock VINA docking computations, as performed by YASARA. The files with .sce or .yob extensions may be viewed with YASARA.<br><br>-HODMe_grid.txt and HODnBu_grid.txt, which contain the data used to generate the 2D potential energy surfaces depicted in Figure 4.In these files, 1st column is C3-C4 distance (in angstrom); 2nd column is O-O distance (alson in angstrom; 3rd column is relative energy (in kcal/mol). <br><br>-BSSE.xls contains the energies for the evaluation of the effect of BSSE on the differences between the energies of radical-pairs at 80 angstrom distance and the values obtained by summing the energies of separate substrates. The gas-phase data clearly show that no BSSE error exists. The difference in solution energies is likewise independent of the SCF energy, and comes about simply due to the way the PCM model treats a system with two separated cavities: the final column ("total interaction") shows that in the radical pair the difference of solvation energy (vs. independent substrates) is almost exactly equal to the difference of total energy. I am still trying to understand why such difference is only apparent in the radical pair system, and not in the HODMe:O2 system. <br>
DOI: 10.6084/m9.figshare.3426062.v1
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v2
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v3
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v4
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v5
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v6
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v7
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v8
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v9
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v10
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v11
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v12
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v13
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v14
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 10 Jun 2016<br>
DOI: 10.6084/m9.figshare.3426062.v15
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 16 Jun 2016.<br><br>File docking.tar contains the results of AutoDock VINA docking computations, as performed by YASARA. The files with .sce or .yob extensions may be viewed with YASARA.<br>
DOI: 10.6084/m9.figshare.3426062.v16
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 16 Jun 2016.<br><br>Three files are NOT inputs/outputs of quantum chemical computations:<br>- docking.tar, which contains the results of AutoDock VINA docking computations, as performed by YASARA. The files with .sce or .yob extensions may be viewed with YASARA.<br><br>-HODMe_grid.txt and HODnBu_grid.txt, which contain the data used to generate the 2D potential energy surfaces depicted in Figure 4.In these files, 1st column is C3-C4 distance (in angstrom); 2nd column is O-O distance (alson in angstrom; 3rd column is relative energy (in kcal/mol). <br>
DOI: 10.6084/m9.figshare.3426062.v17
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 16 Jun 2016.<br><br>Three files are NOT inputs/outputs of quantum chemical computations:<br>- docking.tar, which contains the results of AutoDock VINA docking computations, as performed by YASARA. The files with .sce or .yob extensions may be viewed with YASARA.<br><br>-HODMe_grid.txt and HODnBu_grid.txt, which contain the data used to generate the 2D potential energy surfaces depicted in Figure 4.In these files, 1st column is C3-C4 distance (in angstrom); 2nd column is O-O distance (alson in angstrom; 3rd column is relative energy (in kcal/mol). <br>
DOI: 10.6084/m9.figshare.3426062.v18
title: Refining the reaction mechanism of O2 towards its substrate in cofactor-free dioxygenases

description: Firefly inputs and outputs for the paper "Refining the reaction mechanism of O<sub>2</sub> towards its substrate in cofactor-free dioxygenases", to be submitted to PeerJ on or around 16 Jun 2016.<br><br>Three files are NOT inputs/outputs of quantum chemical computations:<br>- docking.tar, which contains the results of AutoDock VINA docking computations, as performed by YASARA. The files with .sce or .yob extensions may be viewed with YASARA.<br><br>-HODMe_grid.txt and HODnBu_grid.txt, which contain the data used to generate the 2D potential energy surfaces depicted in Figure 4.In these files, 1st column is C3-C4 distance (in angstrom); 2nd column is O-O distance (alson in angstrom; 3rd column is relative energy (in kcal/mol). <br>