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DOI: 10.15468/dl.j5jpht
title: Occurrence Download

description: A dataset containing 2273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Poeppigia procera (Poepp. ex Spreng.) C.Presl)"
 ]
}

 The dataset includes 2273 records from 177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003430-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16714939
title: Gene trees and alignments for phylogenomic analysis supporting transfer of Coniothyrium glycines to the genus Aristastoma

description: Gene trees and alignments for phylogenomic analysis included in the manuscript submitted to Mycologia as "Phylogenomic analysis supports the transfer of Coniothyrium glycines, a soybean pathogen and USDA Select Agent, to the genus Aristastoma"

Repository includes two datasets, both generated through the BUSCO_phylogenomics pipeline. Both include a folder of individual gene trees for the BUSCO genes annotated in each analysis, a file with all the concatenated trees ('ALL.tree'), a superalignment of all the BUSCO proteins with a partition file. The 'ALL.tree' file is easily compatible with ASTRAL-IV and the supermatrix with the partition with IQ-tree, for example. 

Output trees and code to generate figures included in the publication are available in the associated github repo: https://github.com/ngreatens/Aristastoma.

Necessary context is provided in the publication.

Reach out to nicholasgreatens@gmail.com with questions.
DOI: 10.5281/zenodo.16714940
title: Gene trees and alignments for phylogenomic analysis supporting transfer of Coniothyrium glycines to the genus Aristastoma

description: Gene trees and alignments for phylogenomic analysis included in the manuscript submitted to Mycologia as "Phylogenomic analysis supports the transfer of Coniothyrium glycines, a soybean pathogen and USDA Select Agent, to the genus Aristastoma"

Repository includes two datasets, both generated through the BUSCO_phylogenomics pipeline. Both include a folder of individual gene trees for the BUSCO genes annotated in each analysis, a file with all the concatenated trees ('ALL.tree'), a superalignment of all the BUSCO proteins with a partition file. The 'ALL.tree' file is easily compatible with ASTRAL-IV and the supermatrix with the partition with IQ-tree, for example. 

Output trees and code to generate figures included in the publication are available in the associated github repo: https://github.com/ngreatens/Aristastoma.

Necessary context is provided in the publication.

Reach out to nicholasgreatens@gmail.com with questions.
DOI: 10.15468/dl.gawpsh
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Parasesarma calypso"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046682-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.