cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.8279387.v3
title: Recordings of ~20,000 neurons from V1 in response to oriented stimuli

description: Recordings from Stringer et al, 2019, now including higher-order visual cortex. The code to reproduce the figures from the paper is here:https://github.com/MouseLand/stringer-et-al-2019Please use the "issues" section from this repository for all communications regarding this dataset.Each npy file is one recording of deconvolved fluorescence traces + all its metadata, with the name of the file indicating the stimulus set.If you use these data in a paper, please cite the original research paper as well as this dataset using the figshare doi.Each stimulus set is a single image/movie, with each trial rotating that stimulus by a random angle between 0 and 360. Unless otherwise specified, the stimuli cover 90 degrees of visual field at 0.05 cycles/degree and are shown for 750ms, with ~1000ms in-between. This ISI is fixed and determined by the recording rate which changes slightly from dataset to dataset.1) gratings_static: square static gratings.2) minnie: complex stimulus (cartoon mouse head).3) gratings_short: 100ms presentation time4) local: localized to neural receptive fields (30 deg)5) static_biased: rotation drawn randomly from interval [43 47] degreesThe next stimulus sets are all drifting at 2Hz:6) gratings_drifting: drifting gratings7) gratings_low_contrast: 1/20 the full contrast8) gratings_noisy: low contrast and per-frame independent noiseAdded in revision9) sinusoidal gratings with randomized phases10) biased_V2: like #5 but in higher-order areas lateral to V1.<br><br>Note that the stimuli are triggered on the microscope frames, so a neuron is always sampled at the same offset from stimulus start times.
DOI: 10.6084/m9.figshare.1529822.v1
title: Additional images for Kelsey et al.

description: Additional images for "Impact of flanking chromosomal sequences on localization and silencing by the human non-coding RNA XIST"
DOI: 10.6084/m9.figshare.20060684.v1
title: A phylogenetic overview of <i>Squamanita</i>, with descriptions of nine new species and four new combinations

description: Nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS barcode) sequence data from eight type specimens of previously described <i>Squamanita</i> species were obtained. Phylogenetic analysis of ITS and partial nuc 28S rDNA data revealed <i>Squamanita</i> as paraphyletic splitting into two monophyletic groups, which we recognize as the genera <i>Squamanita</i> and <i>Dissoderma</i>. We accept 14 <i>Squamanita</i> and nine <i>Dissoderma</i> species, provide the first sequences of 13 of these, and describe six new species of <i>Squamanita</i> and three new species of <i>Dissoderma</i>. We transfer three species of <i>Squamanita</i> into <i>Dissoderma</i>, one into <i>Cystoderma</i>, and treat <i>S. basii</i> and <i>S. umbilicata</i> as synonyms of <i>D. paradoxum. Squamanita</i> can be distinguished from <i>Dissoderma</i> by the generally larger fleshier basidiomata with a tricholomatoid or amanitoid stature and yellowish to tawny brown pileus and often similarly colored stipe. Most species have cheilo- and pleurocystidia. Species of <i>Dissoderma</i> are small, collybioid or mycenoid, lack cystidia, and the pileus and often upper stipe are purplish gray. Both genera parasitize basidiomata of other agarics.
DOI: 10.6084/m9.figshare.21514455.v1
title: Global effect of phosphorus addition on soil microbial biomass dataset

description: Dataset for The global positive effect of phosphorus addition on soil microbial biomass
DOI: 10.6084/m9.figshare.28557776.v1
title: Machine-learning Guided Search for Phonon-mediated Superconductivity in Boron and Carbon Compounds

description: This dataset contains the raw data, convergence test, and ML models corresponding to the manuscript <i>"Machine-learning Guided Search for Phonon-mediated Superconductivity in Boron and Carbon Compounds"</i> by Niraj K. Nepal and Lin-Lin Wang. The preprint of the manuscript is available at https://doi.org/10.48550/arXiv.2409.18441.
DOI: 10.6084/m9.figshare.5976634.v1
title: Concentration dependency of IAA on IP2.0 Ca2+ responses in AWCON.

description: This is the data of concentration dependency of IAA on IP2.0 Ca<sup>2+</sup> responses in AWC<sup>ON</sup>, which was used in the study Hara-Kuge et al. (2018) as a supporting information.
DOI: 10.17632/25447wz6gg
title: VMC wind measurements during the South Pole Dynamics Campaign

description: ASCII file VMC_single_2778-2811.dat, which contains wind tracking results for ultraviolet (365 nm) images
obtained by the VMC onboard Venus Express for 18 orbits from the South Polar Dynamics Campaign ((orbits 2778-2811, channel uv2)):
1) Orbit number,
2) Julian date.
3) Longitude of the vector origin (degrees of longitude),
4) Latitude of the vector origin (degrees of latitude),
5) Local time for the vector origin (Hour),
6) Zonal speed (m/s),
7) Meridional speed (m/s),
DOI: 10.17632/3sbptrk54c
title: Dataset on isometric contractions of the ankle joint in children with spastic Cerebral Palsy: HD-EMG and torque

description: High-density electromyographic and torque data were collected during isometric contractions (force ramp) of the ankle joint with contraction levels ranging between 15-70% of the MVC. Participants were children aged 5-15 years and had spastic Cerebral Palsy.
DOI: 10.6084/m9.figshare.14645202.v1
title: Molecular and physiological characterization of Fusarium strains associated with different diseases in date palm

description: Data obtained from <i>Fusarium</i> strains, collected from date palm trees showing disease symptoms, that were grown on different temperatures, ranging from 15 to 40°C. SSR data generated from the same <i>Fusarium</i> strains using primer-pairs of SSR markers developed previously for <i>F. verticillioides </i>and<i> </i><i>F. oxysporum</i>. The data set also includes pathogenicity results of five selected <i>Fusarium </i>strains on three date palm cultivars.
DOI: 10.6084/m9.figshare.22099679.v4
title: Tweet Emotion Data

description: <em>Dataset containing tweets and meta data information for multiclass prediction for emotion of tweet.</em><br> <br> <em>The data has 4653 tweet records with 5 features and a multiclass target column, referring to the emotion of the tweet.</em><br> <br> <em>This dataset is an extension of Hugging Face's tweet_eval dataset,</em><br> <em>For additional details about the dataset, please refer to the original source: https://huggingface.co/datasets/tweet_eval</em>
DOI: 10.6084/m9.figshare.24287272.v1
title: Supplementary Material for: The balance of CD8-positive T cells and PD-L1 expression in the myocardium predicts prognosis in lymphocytic fulminant myocarditis

description: Introduction: The clinical significance and prognostic value of T cell involvement and programmed cell death-1 (PD-1)/programmed cell death ligand-1 (PD-L1) have not been established in lymphocytic fulminant myocarditis (FM). We investigated the prognostic impact of the number of CD4+, CD8+, FoxP3+, and PD-1+ T cells, as well as PD-L1 expression, in cardiomyocytes in lymphocytic FM. Methods: This is a single-center observational cohort study. Myocardial tissue was obtained from 16 consecutive patients at lymphocytic FM onset. The median follow-up was 140 days. Cardiac events were defined as a composite of cardiac death and left ventricular-assist device implantation. CD4, CD8, FoxP3, PD-1, and PD-L1 immunostaining was performed on myocardial specimens. Results: The median age of the patients was 52 years (seven men and nine women). There was no significant difference in the number of CD4+ cells. The number of CD8+ cells and the CD8+/CD4+ T cell ratio were higher in the cardiac event group (Event+) than in the group without cardiac events (Event−) (P = 0.048 and P = 0.022, respectively). The number of FoxP3+ T cells was higher in the Event+ group (P = 0.049). Although there was no difference in the number of PD-1+ cells, cardiomyocyte PD-L1 expression was higher in the Event+ group (P = 0.112). Event-free survival was worse in the group with a high CD8+ cell count (P = 0.012) and high PD-L1 expression (P = 0.049). When divided into three groups based on the number of CD8+ cells and PD-L1 expression (CD8highPD-L1high [n = 8], CD8lowPD-L1high [n = 1], and CD8lowPD-L1low [n = 7]), the CD8highPD-L1high group demonstrated the worst event-free survival, while the CD8lowPD-L1high group had a favorable prognosis without cardiac events (P = 0.041). Conclusion: High myocardial expression of CD8+ T cells and PD-L1 may predict a poor prognosis in lymphocytic FM.
DOI: 10.6084/m9.figshare.24906660.v1
title: Ohtani et al.txt

description: Source code for RNA-seq, ChIP-seq, and WGBS analyses.
DOI: 10.6084/m9.figshare.28787255.v1
title: Supplementary Material for: The moderating effect of tobacco smoking on the efficacy of a computer-based brief alcohol intervention: Results from a randomized controlled trial

description: Objective: Alcohol consumption and tobacco smoking may have synergistic harmful effects when present in combination. This combination is highly prevalent and associated with a multitude of diseases. Brief alcohol intervention (BAI) may be less effective among persons who drink alcohol and smoke tobacco than among persons who drink alcohol and do not smoke. The aim of this study was to find out whether BAI is more effective among adults who do not smoke than among those who smoke.
Methods: This study reports secondary outcome analyses of the randomized controlled trial “Testing a proactive expert system intervention to prevent and to quit at-risk alcohol use”. Among municipal office clients, 1646 who were aged 18-64 and consumed alcohol in the last year participated. Using latent growth curve models the impact of BAI was compared by incidence rate ratios (IRRs) of self-reported heavy drinking days and the moderating effect of smoking was investigated.
Results: There was no significant difference between intervention and control in reducing heavy drinking days in persons who never smoked (IRR 1.01, 95% Confidence Interval (CI) 0.92-1.10, P = 0.847), formerly smoked (IRR 0.91, CI 0.77-1.07, P = 0.234), currently smoked less than daily (IRR 0.98, CI 0.86-1.12, P = 0.782) and persons who currently smoked daily (IRR 1.09, CI 0.98-1.22, P = 0.125). 
Conclusion: The effect of BAI did not differ among study participants who currently smoked as among participants who did not. Although not statistically significant, persons who formerly smoked tended to benefit. Persons who currently smoked did not benefit.
DOI: 10.6084/m9.figshare.8066999.v1
title: Singapore Chinese LTL GWAS Meta-analysis

description: Leukocyte telomere length GWAS meta-analysis GWAS results from Singapore Chinese subjects. Data includes rsid, chr, pos, other_allele, test_allele, meta_p, beta, se and p_het.
DOI: 10.17632/fn3xz4csn4
title: Entrepreneurial intention of Chilean Scientists

description: Dataset describing scales of entrepreneurial intention applied to Chilean Scientists
DOI: 10.17632/knkcywcfdm
title: Medication Adherence among hypertensive patients

description: The data is from a cross-sectional survey of patients with hypertension in a facility in the Northern Region of Ghana, West Africa.  The study focused on patients 18 years of age and older who presented with a history of hypertension diagnosis for at least six months, were on medications, and reported to the outpatient department of the hospital.
DOI: 10.6084/m9.figshare.20059022.v1
title: Spatial data of soil related microplastic case and field studies

description: The dataset stored within this repository contains the data of a literature review dealing with the spatial reference, sampling approaches and reported soil context of recent studies focusing on microplastic evidence in soils worldwide (case and field studies). <br> The data were selected through a literature query via Web of Science (Clarivate Analytics, search terms "microplastic" + "soil") and subsequent evaluation and includes, in addition to the papers analyzed (35 papers, 2016-03/2022), the questionnaire applied (metadata) and the corresponding responses. <br> The <strong>OMSP.xlsx</strong> datset includes three tables: 1) number of papers according to search terms by year (2016-03/2022); 2) responces to the questionnaire; 3) questionnaire (metadata). <br> The <strong>OMSP.csv </strong>dataset includes only the related papers (e.g., DOI identifier) and responces to the questionnaire.
DOI: 10.6084/m9.figshare.13065986.v22
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.19847704.v1
title: Case-specific policy mix overviews

description: This data shows policy instruments implemented by (trans)national government and public institutions across seven European cases (European Union, Germany, Hungary, Netherlands, Spain, Sweden, United Kingdom) aimed at the mainstreaming of urban nature-based solutions. For each policy instrument, a short description is provided along with information on instrument type (regulatory, financial, soft), subtype and year of introduction. In addition, instruments are linked to one or more of the seven urban infrastructure regime structures (1 = yes). A justification is provided in column G. For each case, the sum of policy instruments targeting each of the regime structures is indicated.
DOI: 10.6084/m9.figshare.21317436.v1
title: HOME vs. ABAS vs. TADI

description: This dataset contains data of the Home Observation for Measurement of the Environment (HOME) scale, ABAS-II and TADI from children with Down Syndrome and typical development.
DOI: 10.6084/m9.figshare.21404862.v1
title: Predictive factors for hypothyroidy after hemithyroidectomy

description: We conducted a retrospective review of all patients who underwent hemithyroidectomy between 2004 and 2019. Hypothyroidism was defined as a serum thyrotropin level greater than 5 mIU/L. The patients were analyzed for age, sex, preoperative and postoperative thyroid stimulating hormone (TSH), state, side, and volume of the remaining lobe, and histologic diagnosis. <br> Description of the Data and file structure <br> This is an SPSS file concerning the clinical and biological data of patients having a thyroid lobectomy <br> Postoperative hypothyroidism was defined by a TSH level &gt; 5mUI/L. We calculated the remaining volume of the gland considering that the lobe has a roughly ellipsoidal shape. A mathematical formula was adopted: Volume = π / 6 x (a x b xc) with a, b, and c representing, respectively, the length, width, and depth determined by ultrasound. We studied age, sex, preoperative and postoperative TSH levels, operated side, definitive histopathological examination, state of the remaining lobe, follow-up time and the average maintenance dose of Thyroxin for patients who needed thyroid hormone replacement anytime during monitoring. <br> <br>
DOI: 10.6084/m9.figshare.22787921.v1
title: Loss of smooth muscle alpha-actin effects on cell adhesion

description: Protein ratios for cells plated on matrix functionalized substrates
DOI: 10.6084/m9.figshare.28225754.v3
title: Influence of Solar Extreme Ultraviolet Radiations on Ground-based VLF Transmitter Waves in Near-Earth Space

description: These data are plotted as Figures 2 - S1 in the paper "Influence of Solar Extreme Ultraviolet Radiations on Ground-based VLF Transmitter Waves in Near-Earth Space".
DOI: 10.6084/m9.figshare.28562609.v1
title: Normalized gene expression values

description: Human lung adenocarcinoma cells (A549) and human monocytic cells (THP-1) were infected with H3N23 influenza virus A virus. Transcriptome analysis were performed by next generation RNA sequencing of three replicates each for infected A549 cells at 4, 8 and 24h p.i. and infected THP-1 cells at 4, 8, 12 and 24h p.i., and corresponding set of non-infected controls. RNA was transcribed into a double-stranded cDNA library and then sequenced on an Illumina HiSeq 4000 using a paired-end 150 run. Reads from RNAseq were quality checked with FastQC, then trimmed using Trimgalore and trimmed reads were mapped to the human genome (ENSMBL hg38 release 111) using STAR with default settings. Mapped reads were counted at the gene level using RsubRead, then normalized, and log<sub>2</sub> transformed using DESeq2.
DOI: 10.6084/m9.figshare.28624352.v1
title: Yao_et_al_2025_Irrigation-induced_land_water_depletion_aggravated_by_climate_change

description: This is the data set calculated and presented in the manuscript 'Irrigation-induced land water depletion aggravated by climate change'. The corresponding code could be found in https://github.com/YiYao1995/Yao_et_al_2025_Irrigation-induced_land_water_depletion_aggravated_by_climate_change.git<br>ar6_region.matgrid cells corresponding to different IPCC AR6 reference regions<br>surfdata_0.9x1.25_hist_78pfts_CMIP6_simyr1850_c201126_PFTDATA_MASK.nc and irr_diff_out.matused for masking ocean grid cells<br>surfdata_irrigation_method.ncused for getting Latitude and Longitude information of grid cells<br>Area_Equipped_For_IrrigationGrid-cell level irrigated fraction data sets<br>AREA.matgrid cell area<br>Irrigation_Water_Withdrawalirrigation water withdrawal data sets<br>Water_variablesother water fluxes calculated and used in this study
DOI: 10.6084/m9.figshare.29090894.v1
title: <b>PHED-FL – Public Health Emergency Dataset for Federated Learning</b>

description: The PHED-FL dataset is a curated collection of public health records designed to support research in federated learning applications during public health emergencies. It includes anonymized, multi-institutional data relevant to outbreak detection, patient triage, and resource allocation. The dataset simulates real-world scenarios where data privacy and decentralization are critical, enabling the development and evaluation of federated learning models without compromising sensitive health information. PHED-FL includes structured health features such as patient demographics, symptoms, diagnoses, and temporal markers of health events, making it suitable for a variety of machine learning and public health analytics tasks.
DOI: 10.6084/m9.figshare.3512747.v1
title: Appendix A. Error matrix for potential vegetation types from the Gradient Nearest Neighbor model.

description: Error matrix for potential vegetation types from the Gradient Nearest Neighbor model.
DOI: 10.6084/m9.figshare.6813131.v1
title: Machine learning databases used for Journal of Geophysical Research: Space Physics manuscript: "New capabilities for prediction of high-latitude ionospheric scintillation: A novel approach with machine learning."

description: These data are described by the Journal of Geophysical Research: Space Physics manuscript: "New capabilities for prediction of high-latitude ionospheric scintillation: A novel approach with machine learning."<br>The file is organized as a comma separated values (.csv) file for ease of use with Python Pandas DataFrames. The data included are for observations from the Canadian High Arctic Ionospheric Network (CHAIN). CHAIN data are combined with solar and geomagnetic activity data to form a 'machine learning database' in which input 'features' are provided at a given time and attached to a 'label' that is the ionospheric phase scintillation at a future time (for prediction). The prediction lead time in these files is one hour. Full details of the input features and predictive task are provided in the paper. <br><br>Data are provided in two separate files for the years 2015 and 2016. <br>
DOI: 10.17632/bdpdwjpkw8
title: Histologic features of melanoma associated with germline mutations of CDKN2A, CDK4, and POT1 in melanoma-prone families from the United States, Italy, and Spain

description: Supplemental tables for manuscript: "Histologic features of melanoma associated with germline mutations of CDKN2A, CDK4, and POT1 in melanoma-prone families from the United States, Italy, and Spain"
DOI: 10.17632/wrsgpgt6fm
title: Data for: Rheology and Stability of Nanoparticle-stabilized CO2 Foam for Fracturing Application

description: The data included all the original data for the manuscript "Rheology and Stability of Nanoparticle-stabilized CO2 Foam under Reservoir Conditions".
DOI: 10.6084/m9.figshare.21217928.v2
title: Later Pleistocene Middle Awash cercopithecids and comparative data

description: This dataset is associated with three papers published in the <em>American Journal of Biological Anthropology</em>: Brasil et al., 2022a, 2022b, and Taylor et al., 2022. The dataset includes all of the cercopithecid fossils from the Middle Awash study area that are described in these three papers, as well as all of the comparative individuals included in analyses.
DOI: 10.6084/m9.figshare.25772415.v1
title: Data set and Code book of COVID

description: This dataset captures the stress and burnout experiences among healthcare workers in India following the third wave of COVID-19. It presents valuable insights into the psychological toll that the pandemic has taken on frontline workers, shedding light on their mental health challenges. Collected through a cross-sectional study, the dataset includes responses from healthcare professionals across various specialties and regions in India, providing a comprehensive overview of their experiences during this critical period. Researchers and policymakers can utilize this dataset to understand the impact of the pandemic on healthcare workers' well-being, identify key stressors, and develop targeted interventions to support their mental health.<br>
DOI: 10.6084/m9.figshare.29114960.v1
title: Data for analysis in Barrie et al. (2025)

description: These files contain the data used for analysis in: Barrie EM, Krochuk BA, Jarrett C, Ferreira DF, Rodrigues P, Mufumu SL, Malanza SE, Akele AEN, Alene CEE, Brzeski KE, Cooper JC, Wolfe JD and Powell LL (2025)<i> Specialized i</i><i>nsectivores drive differences in avian </i><i>community composition between primary </i><i>and secondary forest in Central Africa. </i><i>Front. </i>Conserv. Sci. 6:1504350. doi: 10.3389/fcosc.2025.1504350At a long-term bird banding station on mainland Equatorial Guinea, we captured over 3200 birds across 6 field seasons in selectively logged secondary forest and in largely undisturbed primary forest. Our objective was to understand how community composition changed with human disturbance—with particular interest in the guilds and species that indicate primary rainforest.banding_data.csv consists of the raw banding/capture data from mist-netting and ringing in the field, including info on time and date of capture, net lane and net number, species, ring number, and recaptures.buffers.csv lists (for each net lane) the amount of overlap with other nearby net lanes and the proportion used for the offset in statistical analysis. See Barrie et al. (2025) for methodology.days.csv lists all combinations of net lanes and dates run and whether these were "Day 1" or "Day 2" (all net lanes were run for two consecutive days per year.effort.csv contains data on effort in terms of mist net hours, with the opening and closing times and duration open for every net run.forest_type.csv lists each net lane and whether it was in primary or secondary forestguilds.csv contains data on the dietary guild classifications of all focal species analysed in Barrie et al. (2025), which is needed to merge with banding_data.csv in R and create the data frame for analysis <br><br><br><br><br>
DOI: 10.6084/m9.figshare.4789144.v1
title: Matlab code of the maximum likelihood estimation and the pseudo-likelihood estimation from Energy landscape analysis of neuroimaging data

description: This code calculates the pairwise maximum entropy model for arbitrary multivariate time series data.