cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9253838
title: Additional file 7: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Identification of DEGs from different comparisons. (XLSX 7975 kb)
DOI: 10.6084/m9.figshare.9253838.v1
title: Additional file 7: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: Identification of DEGs from different comparisons. (XLSX 7975 kb)
DOI: 10.6084/m9.figshare.9253850
title: Additional file 9: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: GO categories for DEGs within significantly enriched profiles. (XLSX 959 kb)
DOI: 10.6084/m9.figshare.9253850.v1
title: Additional file 9: of Transcriptome analysis reveals differences in the mechanisms of fiber initiation and elongation between long- and short-fiber cotton (Gossypium hirsutum L.) lines

description: GO categories for DEGs within significantly enriched profiles. (XLSX 959 kb)
DOI: 10.57967/hf/1790
title: u
DOI: 10.6084/m9.figshare.13448261
title: All data.xlsx

description: Data used in 'Rapid evolution of latitudinal clines in growth and defense of an invasive weed'
DOI: 10.6084/m9.figshare.9253991
title: Additional file 1: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S1. Summary of the deep sequencing and data analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9253991.v1
title: Additional file 1: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S1. Summary of the deep sequencing and data analysis. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9253997
title: Additional file 11: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat

description: Table S1. Cis-element of FtUFGTs promoter function calculate. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9253997.v1
title: Additional file 11: of Diverse biological effects of glycosyltransferase genes from Tartary buckwheat

description: Table S1. Cis-element of FtUFGTs promoter function calculate. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.9254000
title: Additional file 2: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S2. The known circRNAs in the study identified by the BLASTN. (XLSX 386 kb)
DOI: 10.6084/m9.figshare.9254000.v1
title: Additional file 2: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S2. The known circRNAs in the study identified by the BLASTN. (XLSX 386 kb)
DOI: 10.6084/m9.figshare.9254006
title: Additional file 3: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Figure S1. Validation of rice circRNAs candidates. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9254006.v1
title: Additional file 3: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Figure S1. Validation of rice circRNAs candidates. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9254009
title: Additional file 4: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S3. The DECs identified in WXS (S) and WXS (F) at the three stages. (1) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P2 stage (SP2 VS. FP2). (2) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P3 stage (SP3 VS. FP3). (3) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P4 stage (SP4 VS. FP4).
DOI: 10.6084/m9.figshare.9254009.v1
title: Additional file 4: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S3. The DECs identified in WXS (S) and WXS (F) at the three stages. (1) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P2 stage (SP2 VS. FP2). (2) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P3 stage (SP3 VS. FP3). (3) The differentially expressed circRNAs identified in WXS (S) and WXS (F) at the P4 stage (SP4 VS. FP4).
DOI: 10.6084/m9.figshare.9254018
title: Additional file 5: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S4. The annotation of all parental genes of DECs between WXS (S) and WXS (F).
DOI: 10.6084/m9.figshare.9254018.v1
title: Additional file 5: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S4. The annotation of all parental genes of DECs between WXS (S) and WXS (F).
DOI: 10.6084/m9.figshare.9254021
title: Additional file 6: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S5. The topGO enrichment analysis in parental genes of DECs at the three developmental stages. (1) The biological process of topGO enrichment analysis in parental genes of DECs at the P2 stage. (2) The cellular component of topGO enrichment analysis in parental genes of DECs at the P2 stage. (3) The molecular function of topGO enrichment analysis in parental genes of DECs at the P2 stage. (4) The biological process of topGO enrichment analysis in parental genes of DECs at the P3 stage. (5) The cellular component of topGO enrichment analysis in parental genes of DECs at the P3 stage. (6) The molecular function of topGO enrichment analysis in parental genes of DECs at the P3 stage. (7) The biological process of topGO enrichment analysis in parental genes of DECs at the P4 stage. (8) The cellular component of topGO enrichment analysis in parental genes of DECs at the P4 stage. (9) The molecular function of topGO enrichment analysis in parental genes of DECs at the P4 stage. (XLSX 449 kb)
DOI: 10.6084/m9.figshare.9254021.v1
title: Additional file 6: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Table S5. The topGO enrichment analysis in parental genes of DECs at the three developmental stages. (1) The biological process of topGO enrichment analysis in parental genes of DECs at the P2 stage. (2) The cellular component of topGO enrichment analysis in parental genes of DECs at the P2 stage. (3) The molecular function of topGO enrichment analysis in parental genes of DECs at the P2 stage. (4) The biological process of topGO enrichment analysis in parental genes of DECs at the P3 stage. (5) The cellular component of topGO enrichment analysis in parental genes of DECs at the P3 stage. (6) The molecular function of topGO enrichment analysis in parental genes of DECs at the P3 stage. (7) The biological process of topGO enrichment analysis in parental genes of DECs at the P4 stage. (8) The cellular component of topGO enrichment analysis in parental genes of DECs at the P4 stage. (9) The molecular function of topGO enrichment analysis in parental genes of DECs at the P4 stage. (XLSX 449 kb)
DOI: 10.6084/m9.figshare.9254027
title: Additional file 7: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Figure S2. The KEGG pathway analysis in parental genes of DECs. The KEGG pathway analysis in parental genes of DECs at the P2 stage (A), P3 stage (B), and P4 stage (C), respectively. (TIF 615 kb)
DOI: 10.6084/m9.figshare.9254027.v1
title: Additional file 7: of Circular RNA profiling of the rice photo-thermosensitive genic male sterile line Wuxiang S reveals circRNA involved in the fertility transition

description: Figure S2. The KEGG pathway analysis in parental genes of DECs. The KEGG pathway analysis in parental genes of DECs at the P2 stage (A), P3 stage (B), and P4 stage (C), respectively. (TIF 615 kb)
DOI: 10.6084/m9.figshare.10302665
title: MOESM3 of A gastric cancer LncRNAs model for MSI and survival prediction based on support vector machine

description: Additional file 3: Table S3. Correlating mRNA and miRNA of 16 feature lncRNAs. The table shows correlating mRNA and miRNA of 16 feature lncRNAs with P-value &lt; 0.05. All data was downloaded from TANRIC.
DOI: 10.6084/m9.figshare.10302665.v1
title: MOESM3 of A gastric cancer LncRNAs model for MSI and survival prediction based on support vector machine

description: Additional file 3: Table S3. Correlating mRNA and miRNA of 16 feature lncRNAs. The table shows correlating mRNA and miRNA of 16 feature lncRNAs with P-value &lt; 0.05. All data was downloaded from TANRIC.
DOI: 10.6084/m9.figshare.10302671
title: MOESM4 of A gastric cancer LncRNAs model for MSI and survival prediction based on support vector machine

description: Additional file 4: Table S4. Characteristics of patients in the MSI-H and MSS cohorts.
DOI: 10.6084/m9.figshare.10302671.v1
title: MOESM4 of A gastric cancer LncRNAs model for MSI and survival prediction based on support vector machine

description: Additional file 4: Table S4. Characteristics of patients in the MSI-H and MSS cohorts.
DOI: 10.6084/m9.figshare.12922609.v1
title: Additional file 1 of Bioinformatics and expression analysis of histone modification genes in grapevine predict their involvement in seed development, powdery mildew resistance, and hormonal signaling

description: Additional file 1: Table S1. The primer sequences used for qRT-PCR amplification.
DOI: 10.6084/m9.figshare.10302704
title: MOESM3 of m6A modification suppresses ocular melanoma through modulating HINT2 mRNA translation

description: Additional file 3: Table S3. The detail information of clinical characteristics and gene expression of ocular melanoma patient cohorts in tissue chip.
DOI: 10.6084/m9.figshare.10302704.v1
title: MOESM3 of m6A modification suppresses ocular melanoma through modulating HINT2 mRNA translation

description: Additional file 3: Table S3. The detail information of clinical characteristics and gene expression of ocular melanoma patient cohorts in tissue chip.
DOI: 10.6084/m9.figshare.9254135
title: MOESM1 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 1: Table S1. Primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.9254135.v1
title: MOESM1 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 1: Table S1. Primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.21835564.v1
title: Effects of Remote Ischemic Preconditioning on Decreasing Troponin Release in Patients Not Taking Sulfonylureas After Cardiac Surgery – A Meta-Analysis

description: ABSTRACT Introduction: Remote ischemic preconditioning (RIPC) is a new noninvasive myocardial protection strategy that uses blood pressure cuf inflation to simulate transient non-fatal ischemia to protect the myocardium and reduce ischemia-reperfusion injury. Sulfonylureas may mask the effects of RIPC due to their cardioprotec-tive effect. This meta-analysis aimed to evaluate whether RIPC, in the absence of sulfonylureas, reduces troponin release in patients undergoing cardiac surgery. Methods: We conducted a meta-analysis of randomized controlled clinical trials to determine whether RIPC can reduce postoperative troponin release in cardiac surgery patients undergoing cardiopulmonary bypass without treatment with sulfonylureas. The data were normalized to equivalent units prior to the analysis. A random-effects model was used to provide more conservative estimate of the effects in the presence of known or unknown heterogeneity. Results: Six studies with a total of 570 participants were included. The analysis showed that troponin release was lower in the RIPC group than in the control group at six hours (test of standardized mean differences = 0, Z=3.64, P&lt;0.001) and 48 hours (Z=2.72, P=0.007) postoperatively. When the mean of cross-clamping time was &gt; 60 minutes, RIPC reduced troponin release at six hours (Z=2.84, P=0.005), 24 hours (Z=2.64, P=0.008), and 48 hours (Z=2.87, P=0.004) postoperatively. Conclusion: In cardiac surgery patients who are not taking sulfonylureas, RIPC can reduce troponin release at six and 48 hours postoperatively; hence, RIPC may serve significant benefits in certain cardiac surgery patients.
DOI: 10.6084/m9.figshare.9254144
title: MOESM3 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 3: Table S2. Summary statistics of functional annotations in various databases.
DOI: 10.6084/m9.figshare.9254144.v1
title: MOESM3 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 3: Table S2. Summary statistics of functional annotations in various databases.
DOI: 10.6084/m9.figshare.22359965
title: Diagnostic and predictive value of liquid biopsy-derived exosome miR-21 for breast cancer: a systematic review and meta-analysis

description: Studies have revealed that miR-21 is abnormally expressed in breast cancer patients, suggesting that miR-21 could be exploited as a possible diagnostic biomarker for clinical applications. In order to provide clinical evidence that is supported by research, we investigate the diagnostic utility of miR-21 in breast cancer in this study. From their inception to 23 January 2022, the PubMed, EMBASE, Web of Science, Cochrane Library, and Scopus databases were searched for all pertinent English literature. QUADAS-2 for literature quality assessment, GRADE for evidence grading. Statistical analyses were performed using the R 4.0.1 and Revman 5.3. The results were validated using Stata 15.1 software. Subgroup analysis was also performed according to the source of miR-21 and miR-21 combinations. Nine publications with 2048 patients were reviewed for inclusion. All of the included studies are of moderate-high quality. Meta-analysis was performed using a mixed-effects model. The pooled sensitivity, specificity, diagnostic odds ratio (DOR), negative likelihood ratio (NLR) and positive likelihood ratio (PLR) were 0.91 [95% CI (0.86, 0.95)], 0.85 [95% CI (0.77, 0.91)], 56.62 [95% CI (21.00, 184.83)], 0.11 [95% CI (0.05, 0.18)] and 6.35 [95% CI (3.66, 11.16)], respectively. The GRADE classification for miR-21 was A, indicating a strong recommendation for breast cancer screening. The available evidence suggests that miR-21 has sufficient diagnostic value as a biomarker for breast cancer. Its diagnostic precision can be further improved by combining it with other miRNAs. Based on the GRADE review, miR-21 is strongly recommended for breast cancer screening.
DOI: 10.6084/m9.figshare.22359965.v1
title: Diagnostic and predictive value of liquid biopsy-derived exosome miR-21 for breast cancer: a systematic review and meta-analysis

description: Studies have revealed that miR-21 is abnormally expressed in breast cancer patients, suggesting that miR-21 could be exploited as a possible diagnostic biomarker for clinical applications. In order to provide clinical evidence that is supported by research, we investigate the diagnostic utility of miR-21 in breast cancer in this study. From their inception to 23 January 2022, the PubMed, EMBASE, Web of Science, Cochrane Library, and Scopus databases were searched for all pertinent English literature. QUADAS-2 for literature quality assessment, GRADE for evidence grading. Statistical analyses were performed using the R 4.0.1 and Revman 5.3. The results were validated using Stata 15.1 software. Subgroup analysis was also performed according to the source of miR-21 and miR-21 combinations. Nine publications with 2048 patients were reviewed for inclusion. All of the included studies are of moderate-high quality. Meta-analysis was performed using a mixed-effects model. The pooled sensitivity, specificity, diagnostic odds ratio (DOR), negative likelihood ratio (NLR) and positive likelihood ratio (PLR) were 0.91 [95% CI (0.86, 0.95)], 0.85 [95% CI (0.77, 0.91)], 56.62 [95% CI (21.00, 184.83)], 0.11 [95% CI (0.05, 0.18)] and 6.35 [95% CI (3.66, 11.16)], respectively. The GRADE classification for miR-21 was A, indicating a strong recommendation for breast cancer screening. The available evidence suggests that miR-21 has sufficient diagnostic value as a biomarker for breast cancer. Its diagnostic precision can be further improved by combining it with other miRNAs. Based on the GRADE review, miR-21 is strongly recommended for breast cancer screening.
DOI: 10.6084/m9.figshare.9254159
title: MOESM6 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 6: Table S3. Expression of genes related to circadian rhythm, thiamine metabolism, the GA pathway, and energy metabolism.
DOI: 10.6084/m9.figshare.9254159.v1
title: MOESM6 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 6: Table S3. Expression of genes related to circadian rhythm, thiamine metabolism, the GA pathway, and energy metabolism.
DOI: 10.6084/m9.figshare.9254162
title: MOESM7 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 7: Table S4. The correlation of the GA content and plant heights.
DOI: 10.6084/m9.figshare.9254162.v1
title: MOESM7 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 7: Table S4. The correlation of the GA content and plant heights.
DOI: 10.6084/m9.figshare.10302743
title: MOESM9 of m6A modification suppresses ocular melanoma through modulating HINT2 mRNA translation

description: Additional file 9: Table S4. List of protein expression of genes in ocular melanoma cells and normal cells according to the Label-free MS.
DOI: 10.6084/m9.figshare.10302743.v1
title: MOESM9 of m6A modification suppresses ocular melanoma through modulating HINT2 mRNA translation

description: Additional file 9: Table S4. List of protein expression of genes in ocular melanoma cells and normal cells according to the Label-free MS.
DOI: 10.6084/m9.figshare.20787034.v1
title: Additional file 3 of The role of LINC01419 in regulating the cell stemness in lung adenocarcinoma through recruiting EZH2 and regulating FBP1 expression

description: Additional file 3: Table S2. List of primers used for qRT-PCR in this study.
DOI: 10.6084/m9.figshare.10302752
title: MOESM2 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 2. GO and KEGG enrichment of imputed marker genes of subpopulations from Four time points.
DOI: 10.6084/m9.figshare.10302752.v1
title: MOESM2 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 2. GO and KEGG enrichment of imputed marker genes of subpopulations from Four time points.
DOI: 10.6084/m9.figshare.9254177
title: MOESM9 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 9: Table S5. Examples of genes that were homologous to maize during leaf development in switchgrass seedlings.
DOI: 10.6084/m9.figshare.9254177.v1
title: MOESM9 of Comparative transcriptome analysis provides key insights into seedling development in switchgrass (Panicum virgatum L.)

description: Additional file 9: Table S5. Examples of genes that were homologous to maize during leaf development in switchgrass seedlings.
DOI: 10.6084/m9.figshare.10302758
title: MOESM3 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 3. GO and KEGG enrichment of differentially expressed genes in cardiac progenitor cells versus endoderm-like cells.
DOI: 10.6084/m9.figshare.10302758.v1
title: MOESM3 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 3. GO and KEGG enrichment of differentially expressed genes in cardiac progenitor cells versus endoderm-like cells.
DOI: 10.6084/m9.figshare.10302764
title: MOESM4 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 4. GO enrichment of genes bound by ETS1 around TSS at indicated time points.
DOI: 10.6084/m9.figshare.19738284
title: Additional file 5 of Integrated investigation of DNA methylation, gene expression and immune cell population revealed immune cell infiltration associated with atherosclerotic plaque formation

description: Additional file 5: Table S4. Correlation information between fraction of cell types and expression level of genes.
DOI: 10.6084/m9.figshare.10302764.v1
title: MOESM4 of Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment

description: Additional file 4. GO enrichment of genes bound by ETS1 around TSS at indicated time points.
DOI: 10.6084/m9.figshare.19738284.v1
title: Additional file 5 of Integrated investigation of DNA methylation, gene expression and immune cell population revealed immune cell infiltration associated with atherosclerotic plaque formation

description: Additional file 5: Table S4. Correlation information between fraction of cell types and expression level of genes.