cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24547678
title: <b>Data Descriptor</b><i>Genomic resources of aquatic Lepidoptera reveal similarities with Trichoptera in amino acid composition of silk genes</i>

description: README<br><br>Files for Elophila obliteratis:elophila_both_dc_hifiasm.final2 - Primary genome assembly<br>Elophila_obliteralis_alternate_assembly.fasta – Alternate genome assembly<br>Elophila_obliteralis_blast2go_results.pdf – Blast2go Results (functional annotation)<br>Elophila_obliteralis_blastp.xml – Blasted proteins<br>Elophila_obliteralis_braker_annotation.gtf – Braker Annotation (structural annotation)<br>Elophila_obliteralis_braker_annotation_proteins.aa – Annotated Proteins<br>Elophila_obliteralis_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked)<br><br>Files for Hyposmocoma kahamanoahypo_dc_asm.final2.fasta - Primary genome assembly<br>Hyposmocoma_kahamanoa_alternate_assembly.fa – Alternate genome assembly<br>Hyposmocoma_kahamanoa_blast2go_results.pdf – Blast2go Results (functional annotation)<br>Hyposmocoma_kahamanoa_blastp.xml – Blasted proteins<br>Hyposmocoma_kahamanoa_braker_annotation.gtf – Braker Annotation (structural annotation)<br>Hyposmocoma_kahamanoa_braker_annotation_proteins.aa – Annotated Proteins<br>Hyposmocoma_kahamanoa_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked)Heavy chain fibroin sequences submitted to Genbank:Data file S1: amino_acid_compositions.xlsx - Excel file with amino acid composition based on above table and Heckenhauer, J. <i>et al.</i> Characterization of the primary structure of the major silk gene, h-fibroin, across caddisfly (Trichoptera) suborders. <i>iScience</i> <b>26</b>, 107253 (2023).figure2.r - R script to generate figure 2c_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of c-terminal region of h-fibroinn_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of n-terminal region of h-fibroindistance_matrix_c_term.csv - Percentage of bases which are identical in c-terminal alignmentdistance_matrix_n_term.csv - Percentage of bases which are identical in n-terminal alignment<br>
DOI: 10.6084/m9.figshare.24547678.v1
title: <b>Data Descriptor</b><i>Genomic resources of aquatic Lepidoptera reveal similarities with Trichoptera in amino acid composition of silk genes</i>

description: README<br><br>Files for Elophila obliteratis:elophila_both_dc_hifiasm.final2 - Primary genome assembly<br>Elophila_obliteralis_alternate_assembly.fasta – Alternate genome assembly<br>Elophila_obliteralis_blast2go_results.pdf – Blast2go Results (functional annotation)<br>Elophila_obliteralis_blastp.xml – Blasted proteins<br>Elophila_obliteralis_braker_annotation.gtf – Braker Annotation (structural annotation)<br>Elophila_obliteralis_braker_annotation_proteins.aa – Annotated Proteins<br>Elophila_obliteralis_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked)<br><br>Files for Hyposmocoma kahamanoahypo_dc_asm.final2.fasta - Primary genome assembly<br>Hyposmocoma_kahamanoa_alternate_assembly.fa – Alternate genome assembly<br>Hyposmocoma_kahamanoa_blast2go_results.pdf – Blast2go Results (functional annotation)<br>Hyposmocoma_kahamanoa_blastp.xml – Blasted proteins<br>Hyposmocoma_kahamanoa_braker_annotation.gtf – Braker Annotation (structural annotation)<br>Hyposmocoma_kahamanoa_braker_annotation_proteins.aa – Annotated Proteins<br>Hyposmocoma_kahamanoa_repeatmasked_assembly.fasta – Repeat masked assembly (softmasked)Heavy chain fibroin sequences submitted to Genbank:Data file S1: amino_acid_compositions.xlsx - Excel file with amino acid composition based on above table and Heckenhauer, J. <i>et al.</i> Characterization of the primary structure of the major silk gene, h-fibroin, across caddisfly (Trichoptera) suborders. <i>iScience</i> <b>26</b>, 107253 (2023).figure2.r - R script to generate figure 2c_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of c-terminal region of h-fibroinn_term_RAxMLBootstrappingTrees.nex - RAxMLBootstrappingTrees of n-terminal region of h-fibroindistance_matrix_c_term.csv - Percentage of bases which are identical in c-terminal alignmentdistance_matrix_n_term.csv - Percentage of bases which are identical in n-terminal alignment<br>
DOI: 10.15468/dl.wakvh7
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricalysia landanensis R.D.Good"
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128043-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g5nwj
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium malacothrix Sleumer"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128044-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8273wm
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachymene scapigera (Domin) B.L.Burtt"
 ]
}

 The dataset includes 419 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128045-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nnrs2
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus koeieanus Ronniger"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128046-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10949418
title: Example data for MAgPIE workshop
DOI: 10.5281/zenodo.10949419
title: Example data for MAgPIE workshop
DOI: 10.15468/dl.cdwr57
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heracleum sphondylium L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128047-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10947318
title: Long-term Agricultural Experiments: Data Management Survey

description: Results of an online survey used to guage views of researchers within the LTE community on data management issues and knowledge. The survey was broken down in to 4 main questions and can be found at the following link - further responses are still welcome: https://forms.office.com/e/8DmapwLRr8.



About your role

Data management & sharing

Describing LTEs and their data

Challenges for data management & sharing     


At the time of publication, 55 responses had been recieved.

The survey was developed in response to an LTE Conference Workshop held at Rothamsted Research, UK in June 2023.
description: The survey used a Micrsoft Form to collect responses. The document 'survey questions' describes the questions and responses. 

The survey was circulated to conference participants and advertised on social media channels (LinkedIn and Twitter).  

Responses have had participant names and emails removed, although institutional affiliation and country are retained.
DOI: 10.5281/zenodo.10947319
title: Long-term Agricultural Experiments: Data Management Survey

description: Results of an online survey used to guage views of researchers within the LTE community on data management issues and knowledge. The survey was broken down in to 4 main questions and can be found at the following link - further responses are still welcome: https://forms.office.com/e/8DmapwLRr8.



About your role

Data management & sharing

Describing LTEs and their data

Challenges for data management & sharing     


At the time of publication, 55 responses had been recieved.

The survey was developed in response to an LTE Conference Workshop held at Rothamsted Research, UK in June 2023.
description: The survey used a Micrsoft Form to collect responses. The document 'survey questions' describes the questions and responses. 

The survey was circulated to conference participants and advertised on social media channels (LinkedIn and Twitter).  

Responses have had participant names and emails removed, although institutional affiliation and country are retained.
DOI: 10.15468/dl.wtzsq6
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulex canescens Lange"
 ]
}

 The dataset includes 192 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128049-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbs5yh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonotis leyeensis W.T.Wang"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128048-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnxd5c
title: Occurrence Download

description: A dataset containing 1106 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium mandarinorum Diels"
 ]
}

 The dataset includes 1106 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128050-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tabyyz
title: Occurrence Download

description: A dataset containing 141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricalysia lasiodelphys (K.Schum. & K.Krause) A.Chev."
 ]
}

 The dataset includes 141 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128051-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18154/rwth-2024-01177
title: Dataset to "Inline Raman Spectroscopy and Indirect Hard Modeling for Concentration Monitoring of Dissociated Acid Species"

description: The presented experimental data are associated with the investigations and results published in the following article: “Alexander Echtermeyer, Caroline Marks, Alexander Mitsos, Jörn Viell. Inline Raman Spectroscopy and Indirect Hard Modeling for Concentration Monitoring of Dissociated Acid Species. Applied Spectroscopy, 2021, 75(5):506–519. DOI: 10.1177/0003702820973275“. The dataset comprises Raman spectra assigned to composition data from sample preparation and titration experiments for the following chemical systems: titration of acetic acid in aqueous solution, titration of citric acid in aqueous solution, titration of formic acid in aqueous solution, titration of itaconic acid in aqueous solution, titration of levulinic acid in aqueous solution, titration of oxalic acid in aqueous solution, and titration of succinic acid in aqueous solution. In-depth information on the experimental procedure, employed materials, and applied hard- and software are provided in the associated main article and in the respective subfolder for each chemical system in the presented dataset.
DOI: 10.15468/dl.jkwtbx
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus komarovii Serg."
 ]
}

 The dataset includes 39 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128052-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xzpc9z
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachymene tripartita Hoogland"
 ]
}

 The dataset includes 96 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128053-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10927160
title: Piezomagnetic vibration energy harvester with an amplifier

description: This repository contains results of simulation of the effect of an amplification mechanism in a nonlinear vibration energy harvesting system where a ferromagnetic beam resonator is attached to the vibration source through an additional linear spring with a damper. The beam moves in the nonlinear double-well potential caused by interaction with two magnets. The piezoelectric patches with electrodes attached to the electrical circuit support mechanical energy transduction into electrical power. The results show that the additional spring can improve energy harvesting. By changing its stiffness, we observed various solutions. At the point of the optimal stiffness of the additional spring, the power output is amplified a few times depending on the excitation amplitude.
description: The FileNames means the excitation amplitudes (1, 3, 10 [mm]) and excitation frequencies (5, 10 [Hz]).The MAT file contains variable arrays:Xout[102400][5][14] – time series of 102400 elements, output signals :               [5] - x1[m], v1[m/s], x2[m], v2[m/s], v[V] for different stiffness values according to k1_range[14].Mean_power [14 elements] -  Mean power recovered against the stiffness values.k1_range[14 elements] stiffness of the spring = [0.1000 0.5000 1 5 10 50 100 500 1000 5000 10000 50000 100000 500000]
DOI: 10.5281/zenodo.10927161
title: Piezomagnetic vibration energy harvester with an amplifier

description: This repository contains results of simulation of the effect of an amplification mechanism in a nonlinear vibration energy harvesting system where a ferromagnetic beam resonator is attached to the vibration source through an additional linear spring with a damper. The beam moves in the nonlinear double-well potential caused by interaction with two magnets. The piezoelectric patches with electrodes attached to the electrical circuit support mechanical energy transduction into electrical power. The results show that the additional spring can improve energy harvesting. By changing its stiffness, we observed various solutions. At the point of the optimal stiffness of the additional spring, the power output is amplified a few times depending on the excitation amplitude.
description: The FileNames means the excitation amplitudes (1, 3, 10 [mm]) and excitation frequencies (5, 10 [Hz]).The MAT file contains variable arrays:Xout[102400][5][14] – time series of 102400 elements, output signals :               [5] - x1[m], v1[m/s], x2[m], v2[m/s], v[V] for different stiffness values according to k1_range[14].Mean_power [14 elements] -  Mean power recovered against the stiffness values.k1_range[14 elements] stiffness of the spring = [0.1000 0.5000 1 5 10 50 100 500 1000 5000 10000 50000 100000 500000]
DOI: 10.15468/dl.y64agu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herniaria ciliolata Melderis",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128055-240321170329656/datasets/export for details.
DOI: 10.15468/dl.98dbru
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonotis longipes W.T.Wang"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128056-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25229375
title: Files and results

description: Control files, alignment, and calibrated trees used in a metazoan molecular clock analysis. Directory structure is as follows:Three folders for the three calibration schemes studied - Uniform, Skew normal and Normal.Within these folders, there are 16 subfolders for each of the 8 different tree hypotheses tested using both autocorrelated (AC) and independent (IR) rates models. Additionally, each holds an alignment file (ConcatAlign.phy) and rates file (lg.dat)Within each tree/model folder:Data - calibrated tree file.gH - control file and results from one chain. mcmc - control file and results from one chain. priors - control file and results from one chain.Result_tables.xlsx - contains age estimates for each node for each tree/model/calibration. Age estimates are averaged across converged chains.
DOI: 10.6084/m9.figshare.25229375.v1
title: Files and results

description: Control files, alignment, and calibrated trees used in a metazoan molecular clock analysis. Directory structure is as follows:Three folders for the three calibration schemes studied - Uniform, Skew normal and Normal.Within these folders, there are 16 subfolders for each of the 8 different tree hypotheses tested using both autocorrelated (AC) and independent (IR) rates models. Additionally, each holds an alignment file (ConcatAlign.phy) and rates file (lg.dat)Within each tree/model folder:Data - calibrated tree file.gH - control file and results from one chain. mcmc - control file and results from one chain. priors - control file and results from one chain.Result_tables.xlsx - contains age estimates for each node for each tree/model/calibration. Age estimates are averaged across converged chains.
DOI: 10.15468/dl.3sjtc6
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulex cantabricus Álv.Mart., Fern.Casado, Fern.Prieto, Nava & Vera"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128057-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gwnrb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium manipurense (Watt ex Brandis) Sleumer"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128058-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfr9yt
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricalysia lejolyana Sonké & Cheek"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128059-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.77befp
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus kondratjukii V.M.Ostapko"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128060-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5s62q
title: Occurrence Download

description: A dataset containing 1236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachyphrynium braunianum (K.Schum.) Baker"
 ]
}

 The dataset includes 1236 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128061-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rphh5b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herniaria fruticosa L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128062-240321170329656/datasets/export for details.
DOI: 10.15468/dl.z632yh
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trigonotis macrophylla Vaniot"
 ]
}

 The dataset includes 69 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wejxqr
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulex densus Welw. ex Webb"
 ]
}

 The dataset includes 453 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128065-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkbzrh
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vaccinium megalophyes Sleumer"
 ]
}

 The dataset includes 31 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128064-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yxk33s
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tricalysia leucocarpa (Baill.) Ranariv. & De Block"
 ]
}

 The dataset includes 113 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128067-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvqbq8
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus kosteleckyanus Opiz"
 ]
}

 The dataset includes 152 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128068-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.