cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5397314
title: Amblyopsis spelaea YFTC 23875 SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5397808
title: Impact of the PSR J0740+6620 radius constraint on the properties of high-density matter : Weighted Monte Carlo samples for neutron star observables

description: This data release contains weighted Monte Carlo samples associated with Legred, Chatziioannou, Essick, Han, and Landry, 2021 "Impact of PSR J0740+6620 radius constraint on the properties of high-density matter" Phys. Rev. D 104, 063003; doi:10.1103/PhysRevD.104.063003
description: We provide weighted Monte Carlo samples for the, the natural logarithm of the sample weight when using two different measurements of J0740+6620 Radius, and when using no measurement of the radius, but just using the established mass measurement, the maximum Tolman-Oppenheimer-Volkoff (TOV) mass, the pressure divided by the speed of light squared at nuclear saturation, twice nuclear saturation, and six times nuclear saturation density, the dimensionless tidal deformability of a 1.4 and 2.0 solar mass NS, and the radius of a 1.4 and 2.0 solar mass NS, as well as the number of stable branches in the M-R curve, the central density of a maximum TOV mass star, the maximum speed of sound, the baryon density at the maximum speed of sound, and the speed of sound at the central density of a maximum TOV mass star. See the README.md for more details.
DOI: 10.5281/zenodo.5397807
title: Impact of the PSR J0740+6620 radius constraint on the properties of high-density matter : Weighted Monte Carlo samples for neutron star observables

description: This data release contains weighted Monte Carlo samples associated with Legred, Chatziioannou, Essick, Han, and Landry, 2021 "Impact of PSR J0740+6620 radius constraint on the properties of high-density matter" Phys. Rev. D 104, 063003; doi:10.1103/PhysRevD.104.063003
description: We provide weighted Monte Carlo samples for the, the natural logarithm of the sample weight when using two different measurements of J0740+6620 Radius, and when using no measurement of the radius, but just using the established mass measurement, the maximum Tolman-Oppenheimer-Volkoff (TOV) mass, the pressure divided by the speed of light squared at nuclear saturation, twice nuclear saturation, and six times nuclear saturation density, the dimensionless tidal deformability of a 1.4 and 2.0 solar mass NS, and the radius of a 1.4 and 2.0 solar mass NS, as well as the number of stable branches in the M-R curve, the central density of a maximum TOV mass star, the maximum speed of sound, the baryon density at the maximum speed of sound, and the speed of sound at the central density of a maximum TOV mass star. See the README.md for more details.
DOI: 10.5517/ccdc.csd.cc27zx5b
title: CCDC 2085282: Experimental Crystal Structure Determination

description: Related Article: Nicholas E. Bodé, Joseph P. Tassone, Michael J. Ferguson, Mark Stradiotto|2021|Organometallics|40|2915|doi:10.1021/acs.organomet.1c00369
DOI: 10.5517/ccdc.csd.cc282brg
title: CCDC 2087625: Experimental Crystal Structure Determination

description: Related Article: Chaima Daghar, Noureddine Issaoui, Houda Marouani, Thierry Roisnel, Omar Al-Dossary|2021|J.Mol.Struct.|1247|131311|doi:10.1016/j.molstruc.2021.131311
DOI: 10.5517/ccdc.csd.cc282yq1
title: CCDC 2088213: Experimental Crystal Structure Determination

description: Related Article: Badiaa Essghaier, Rihab Dridi, Amal Arouri, Mohamed Faouzi Zid|2021|Polyhedron|208|115420|doi:10.1016/j.poly.2021.115420
DOI: 10.5517/ccdc.csd.cc2838j6
title: CCDC 2088517: Experimental Crystal Structure Determination

description: Related Article: Guilherme L. dos Santos, Júlia P.O. Silva, Gustavo Galleani, Marcos V. Colaço, Fabio F. Ferreira, Isadora T.S. Bastos, Mônica S. Ferreira, Ricardo O. Freire, Lippy F. Marques|2021|J.Lumin.|239|118398|doi:10.1016/j.jlumin.2021.118398
DOI: 10.5517/ccdc.csd.cc2838k7
title: CCDC 2088518: Experimental Crystal Structure Determination

description: Related Article: Guilherme L. dos Santos, Júlia P.O. Silva, Gustavo Galleani, Marcos V. Colaço, Fabio F. Ferreira, Isadora T.S. Bastos, Mônica S. Ferreira, Ricardo O. Freire, Lippy F. Marques|2021|J.Lumin.|239|118398|doi:10.1016/j.jlumin.2021.118398
DOI: 10.5517/ccdc.csd.cc27k6wx
title: CCDC 2072129: Experimental Crystal Structure Determination

description: Related Article: Xuan Liang, Qi Zhang, Zaiyong Zhang, Qiaoce Ding, Xuefeng Mei|2021|Cryst.Growth Des.|21|4997|doi:10.1021/acs.cgd.1c00437
DOI: 10.5517/ccdc.csd.cc27k6xy
title: CCDC 2072130: Experimental Crystal Structure Determination

description: Related Article: Xuan Liang, Qi Zhang, Zaiyong Zhang, Qiaoce Ding, Xuefeng Mei|2021|Cryst.Growth Des.|21|4997|doi:10.1021/acs.cgd.1c00437
DOI: 10.5517/ccdc.csd.cc27k6vw
title: CCDC 2072128: Experimental Crystal Structure Determination

description: Related Article: Xuan Liang, Qi Zhang, Zaiyong Zhang, Qiaoce Ding, Xuefeng Mei|2021|Cryst.Growth Des.|21|4997|doi:10.1021/acs.cgd.1c00437
DOI: 10.5517/ccdc.csd.cc287csp
title: CCDC 2092462: Experimental Crystal Structure Determination

description: Related Article: Sahidul Mondal, Ambreen Rashid, Pradyut Ghosh|2021|J.Organomet.Chem.|952|122027|doi:10.1016/j.jorganchem.2021.122027
DOI: 10.5517/ccdc.csd.cc289m7g
title: CCDC 2094615: Experimental Crystal Structure Determination

description: Related Article: Jiahui Duan, Xinwei He, Pui Ying Choy, Qi Wang, Mengqing Xie, Ruxue Li, KeKe Xu, Yongjia Shang, Fuk Yee Kwong|2021|Org.Lett.|23|6455|doi:10.1021/acs.orglett.1c02266
DOI: 10.5517/ccdc.csd.cc28d821
title: CCDC 2097152: Experimental Crystal Structure Determination

description: Related Article: Jiahui Duan, Xinwei He, Pui Ying Choy, Qi Wang, Mengqing Xie, Ruxue Li, KeKe Xu, Yongjia Shang, Fuk Yee Kwong|2021|Org.Lett.|23|6455|doi:10.1021/acs.orglett.1c02266
DOI: 10.5517/ccdc.csd.cc2834r9
title: CCDC 2088400: Experimental Crystal Structure Determination

description: Related Article: Suman Mallick, Purnananda Garu, Jagannath Chowdhury, Rajat Saha, Swarup Chattopadhyay|2021|Polyhedron|208|115422|doi:10.1016/j.poly.2021.115422
DOI: 10.6084/m9.figshare.16563948.v1
title: protonLobePriors.nii.gz

description: lung lobe priors for segmentation<br>
DOI: 10.6084/m9.figshare.16563948
title: protonLobePriors.nii.gz

description: lung lobe priors for segmentation<br>
DOI: 10.6084/m9.figshare.16563951
title: protonLobes.h5

description: weights for u-net-based proton lobe segmentation
DOI: 10.6084/m9.figshare.16563951.v1
title: protonLobes.h5

description: weights for u-net-based proton lobe segmentation
DOI: 10.48324/dandi.000039/0.210902.2328
title: Allen Institute – Contrast tuning in mouse visual cortex with calcium imaging

description: A two photon calcium imaging dataset from Allen Institute measuring responses to full-field drifting gratings (approx. 120x90 degrees of visual space) of 8 directions and 6 contrasts (5%, 10%, 20%, 40%, 60%, 80%). Mouse Cre lines expressing GCaMP6f were imaged to record responses of   pyramidal neurons across cortical layers (Cux2: layer 2/3; Rorb: layer 4; Rbp4: layer 5; Ntsr1: layer 6) as well as inhibitory interneurons (Vip and Sst). All experimental sessions took place on the same data collection pipeline as the Allen Brain Observatory (see http://observatory.brain-map.org/visualcoding) and have the same visual stimulus monitor calibration and positioning, two photon imaging systems and image processing pipeline, and running wheel to track locomotion.

 Data are subject to Allen Institute Terms of Use policy, available at: http://www.alleninstitute.org/legal/terms-use/
DOI: 10.6084/m9.figshare.16563957
title: Russian Wheat aphid green bridge data

description: Two data files uploadedThe first is the field surveys of grasses from fields and roadsides across south australia with herbarium ID, site information and D. noxia abundance.The second is the laboratory testing of sown and potted grass species for the ability to host <i>D. noxia. </i>
DOI: 10.6084/m9.figshare.16563957.v1
title: Russian Wheat aphid green bridge data

description: Two data files uploadedThe first is the field surveys of grasses from fields and roadsides across south australia with herbarium ID, site information and D. noxia abundance.The second is the laboratory testing of sown and potted grass species for the ability to host <i>D. noxia. </i>
DOI: 10.6073/pasta/88a8b327f77f9818fc48751e90f4d2cb
title: Periphyton Productivity from the Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), from October 2001 to Present

description: Periphyton productivity was measured annually at FCE LTER sites in Florida Bay and Shark Slough using light and dark BOD bottle incubations. Data are presented in terms of mass oxygen and/or carbon produced/consumed per gram of periphyton and per m2 of marsh. This is part of continuous data collection to test the hypothesis that phosphorus and nitrogen limit productivity at the upstream and downstream ends, respectively, of the FCE transects. Conclusions await longer-term data collection.
DOI: 10.5281/zenodo.5398824
title: Pigment, fatty acid and lipid data of the sea slug Elysia crispata in two habitat depths

description: Sacoglossan sea slugs are the only animals able to sequester functional chloroplasts from the algae they feed on and keep them functional for more than a month. Here, we characterized <em>Elysia crispata</em> distributed in a coral reef from Southern Gulf of Mexico at two depths: 0-4 m and 8-12 m. We provide information on the concentrations of 12 pigments, 27 fatty acids, and total lipid, glycolipid and phospholipid amounts.
DOI: 10.5281/zenodo.5398823
title: Pigment, fatty acid and lipid data of the sea slug Elysia crispata in two habitat depths

description: Sacoglossan sea slugs are the only animals able to sequester functional chloroplasts from the algae they feed on and keep them functional for more than a month. Here, we characterized <em>Elysia crispata</em> distributed in a coral reef from Southern Gulf of Mexico at two depths: 0-4 m and 8-12 m. We provide information on the concentrations of 12 pigments, 27 fatty acids, and total lipid, glycolipid and phospholipid amounts.
DOI: 10.5281/zenodo.5398862
title: Amblyopsis rosae L1 decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5398861
title: Amblyopsis rosae L1 decontaminated FSCR

description: .
DOI: 10.17632/47hdfvwxnc.1
title: Data for: CHILDHOOD TRAUMA AND POST-TRAUMA ENVIRONMENT AFFECT FEAR MEMORY AND ALCOHOL USE DIFFERENTLY IN MALE AND FEMALE MICE

description: SPSS files for behavior
DOI: 10.17632/t3nwpsz8fk.1
title: Data for: Genesis of MORB-like 56Fe values of the South China Sea basalts: constraints from source heterogeneity and fluids metasomatism

description: This table includes Fe isotopic compositions of the South China Sea basalts.
DOI: 10.17632/tz4z2syb2r.1
title: DDX11 loss causes replication stress and pharmacologically exploitable DNA repair defects

description: DDX11 encodes an iron–sulfur cluster DNA helicase required for development, mutated, and overexpressed in cancers. Here, we show that loss of DDX11 causes replication stress and sensitizes cancer cells to DNA damaging agents, including PARP inhibitors and platinum drugs. We find that DDX11 helicase activity prevents chemotherapy drug hypersensitivity and accumulation of DNA damage. Mechanistically, DDX11 acts downstream of 53BP1 to mediate homology-directed repair and RAD51 focus formation in manners nonredundant with BRCA1 and BRCA2. As a result, DDX11 down-regulation aggravates the chemotherapeutic sensitivity of BRCA1/2-mutated cancers and resensitizes chemotherapy drug–resistant BRCA1/2-mutated cancer cells that regained homologous recombination proficiency. The results further indicate that DDX11 facilitates recombination repair by assisting DSB resection and the loading of both RPA and RAD51 on single-stranded DNA substrates. We propose DDX11 as a potential target in cancers by creating pharmacologically exploitable DNA repair vulnerabilities.
DOI: 10.6084/m9.figshare.14802906
title: Supporting data

description: Dataset for the article: Motivation matters: lighter littermates of the domestic cat compete more successfully for meat at weaning
DOI: 10.6084/m9.figshare.14802906.v2
title: Supporting data

description: Dataset for the article: Motivation matters: lighter littermates of the domestic cat compete more successfully for meat at weaning
DOI: 10.6084/m9.figshare.14802906.v1
title: Supporting data

description: Dataset for the article: Motivation matters: lighter littermates of the domestic cat compete more successfully for meat at weaning
DOI: 10.3886/e149161
title: LA River STEW-MAP

description: In recent years environmental stewardship has been emphasized as one solution to social-ecological sustainability concerns, especially at the local scale. The Stewardship Mapping and Assessment Project (STEW-MAP) is a national research program developed by the USDA Forest Service that has been implemented at numerous locations in the United States and internationally, including the Los Angeles River watershed. Through an online survey of stewardship groups, the LA River STEW-MAP aims to provide better and more detailed information on the organizational characteristics, geographical footprint, and collaborative relationships of groups working on environmental stewardship in the Los Angeles River watershed. <br>Specifically, this study compared the mission statements of the responding groups to previously proposed definitions and frameworks of organizational environmental stewardship to see how well they were reflected. A thematic analysis of the mission statements was also carried out to identify locally important themes and priorities. Results show that, although often consistent, the mission statements do not always reflect existing concepts around environmental stewardship. Additionally, stewardship is not always explicit in the mission statements of organizations that are known to conduct these activities. We suggest that non-traditional groups that engage in stewardship work (e.g., research institutions) are an overlooked actor in sustainable city goals.<b></b>
description: Response Rates: 18%
description: Presence of Common Scales: A Likert-type scale was used
description: The LA River STEW-MAP sampling frame used an existing LA County STEW-MAP dataset as a starting point for identifying organizations within the LA River watershed engaged in stewardship work. In addition, key stewardship groups within the watershed were identified by the planning team, and then approached by (removed for blind review) with a request for their list of relevant organizational partners and potential data providers in the geographic area. The organizations on those two lists were further investigated by (removed for blind review) through internet research (e.g. dedicated webpages on partners, mentions of project partners) to find additional partners of the responding organizations.
description: Organizations involved in stewardship work in the Los Angeles River Watershed.
description: telephone interview; web-based survey;
DOI: 10.3886/e149161v1
title: LA River STEW-MAP

description: In recent years environmental stewardship has been emphasized as one solution to social-ecological sustainability concerns, especially at the local scale. The Stewardship Mapping and Assessment Project (STEW-MAP) is a national research program developed by the USDA Forest Service that has been implemented at numerous locations in the United States and internationally, including the Los Angeles River watershed. Through an online survey of stewardship groups, the LA River STEW-MAP aims to provide better and more detailed information on the organizational characteristics, geographical footprint, and collaborative relationships of groups working on environmental stewardship in the Los Angeles River watershed. <br>Specifically, this study compared the mission statements of the responding groups to previously proposed definitions and frameworks of organizational environmental stewardship to see how well they were reflected. A thematic analysis of the mission statements was also carried out to identify locally important themes and priorities. Results show that, although often consistent, the mission statements do not always reflect existing concepts around environmental stewardship. Additionally, stewardship is not always explicit in the mission statements of organizations that are known to conduct these activities. We suggest that non-traditional groups that engage in stewardship work (e.g., research institutions) are an overlooked actor in sustainable city goals.<b></b>
description: Response Rates: 18%
description: Presence of Common Scales: A Likert-type scale was used
description: The LA River STEW-MAP sampling frame used an existing LA County STEW-MAP dataset as a starting point for identifying organizations within the LA River watershed engaged in stewardship work. In addition, key stewardship groups within the watershed were identified by the planning team, and then approached by (removed for blind review) with a request for their list of relevant organizational partners and potential data providers in the geographic area. The organizations on those two lists were further investigated by (removed for blind review) through internet research (e.g. dedicated webpages on partners, mentions of project partners) to find additional partners of the responding organizations.
description: Organizations involved in stewardship work in the Los Angeles River Watershed.
description: telephone interview; web-based survey;
DOI: 10.6084/m9.figshare.14327489
title: ORCHIDEE model outputs files and codes associated with the manuscript "Optimizing Carbon Cycle Parameters Drastically Improves Terrestrial Biosphere Model Underestimates of Dryland Mean Net CO2 Flux and its Inter-Annual Variability" by Mahmud et al. (2021).

description: - The flux data and forcing files for all 12 sites are stored in this repository to run the ORCHIDEE model simulation for SW US semiarid site optimizations performed in the manuscript "Optimizing Carbon Cycle Parameters Drastically Improves Terrestrial Biosphere Model Underestimates of Dryland Mean Net CO2 Flux and its Inter-Annual Variability". - The python script "preprocessing_script.py" performs the necessary processing to generate netcdf files to run the ORCHIDAS simulation for all 12 sites. <br>- The post-processing can be done using the python script "postprocessing_script.py" that replicates the figures and tables of the manuscript.
DOI: 10.6084/m9.figshare.14327489.v3
title: ORCHIDEE model outputs files associated with the manuscript "Optimizing phenology parameters drastically improves terrestrial biosphere model underestimates of dryland net CO2 flux inter-annual variability" by Mahmud et al. submitted.

description: ORCHIDEE model simulation outputs for SW US semiarid sites optimizations needed to generate the figures and tables of the manuscript "Optimizing phenology parameters drastically improves terrestrial biosphere model underestimates of dryland net CO2 flux inter-annual variability". The post-processing can be done using the python scripts that are freely available in a GitHub repository (https://github.com/kashifmahmud/SW_US_semiarid).
DOI: 10.6084/m9.figshare.16564047
title: Data from: Extinction of rare fish predicts an abrupt loss of ecological function in the future of Amazonian streams

description: 1. Species are going extinct a thousand times times faster than expected due to human impacts. When the extinction of species culminates in functional loss, ecosystem functioning is altered. Functional extinction risk depends on taxonomic and functional rarity, with the non-redundant traits found in rare species being the most vulnerable. 2. To investigate the relationship between taxonomic rarity and functional extinction, we ran extinction simulations driven by taxonomic rarity. Firstly, we sampled the fish fauna of 40 pristine Amazonian streams and compiled functional traits related to the body size, defence, diet, stratification and activity of species. Then, we removed species, beginning with the rarest and ending with the commonest (and vice-versa) and compared the observed patterns with random extinction at local and regional scales. 3. Following the removal of rare species, the functional rarity and body size of the community both decreased, and functional extinctions occurred after less than 10% of extinction at both spatial scales. Otherwise, the removal of common species resulted in an increase in functional rarity at the local scale, although widespread species ensured the persistence of a set of unique functional traits at a regional scale. Additionally, more than 60% of the common species had to go extinct before any functional extinction occurred at either scale. 4. If the ongoing mass extinction targets rare species, Amazonian stream ecosystems will be impacted by the loss of fish species associated with vulnerable functions. 5. We propose an extinction risk assessment based on the ecosystem, and recommend that future studies apply our approach to other taxa and ecosystems, to better understand the effects of human impacts on ecosystem functioning.
DOI: 10.6084/m9.figshare.16564047.v1
title: Data from: Extinction of rare fish predicts an abrupt loss of ecological function in the future of Amazonian streams

description: 1. Species are going extinct a thousand times times faster than expected due to human impacts. When the extinction of species culminates in functional loss, ecosystem functioning is altered. Functional extinction risk depends on taxonomic and functional rarity, with the non-redundant traits found in rare species being the most vulnerable. 2. To investigate the relationship between taxonomic rarity and functional extinction, we ran extinction simulations driven by taxonomic rarity. Firstly, we sampled the fish fauna of 40 pristine Amazonian streams and compiled functional traits related to the body size, defence, diet, stratification and activity of species. Then, we removed species, beginning with the rarest and ending with the commonest (and vice-versa) and compared the observed patterns with random extinction at local and regional scales. 3. Following the removal of rare species, the functional rarity and body size of the community both decreased, and functional extinctions occurred after less than 10% of extinction at both spatial scales. Otherwise, the removal of common species resulted in an increase in functional rarity at the local scale, although widespread species ensured the persistence of a set of unique functional traits at a regional scale. Additionally, more than 60% of the common species had to go extinct before any functional extinction occurred at either scale. 4. If the ongoing mass extinction targets rare species, Amazonian stream ecosystems will be impacted by the loss of fish species associated with vulnerable functions. 5. We propose an extinction risk assessment based on the ecosystem, and recommend that future studies apply our approach to other taxa and ecosystems, to better understand the effects of human impacts on ecosystem functioning.
DOI: 10.6084/m9.figshare.16564038
title: Study of Suspended Sediment Diffusion Coefficient in Submerged Vegetation Flow

description: Flume experiments were conducted to investigate the transport and diffusion process of suspended sediment in submerged vegetation flow. The dataset presented includs the vertical distribution of momentum exchange coefficient, sediment diffuison coefficient, the ratio of sediment diffusion coefficient to momentum exchange coefficient and suspended sediment concentration under the influence of submerged canopy.<br>