cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fhn3d9
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrophorus granulosus (Bloch & Schneider, 1801)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 84 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039269-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3833365_d1.v1
title: Additional file 1: Figure S1. of Sexually divergent induction of microglial-associated neuroinflammation with hippocampal aging

description: Comparison of all pairwise gene expression sets. Figure S2. qPCR controls. Table S1. Cell-specific gene lists from Zhang et al. Table S2. Cell-specific gene lists from Zeisel et al. Table S3. Microglial gene lists from Hickman et al. Table S4. Gene Expression Assays. Table S5. Primary and secondary antibodies. Table S6. Transcripts differentially expressed with age. Table S7. Pathway, regulator and function changes with aging. Table S8. Transcripts differentially expressed between sexes. Table S9. Pathway, regulator and function differences between sexes. Table S10. Sex difference pathways, processes, and regulators. (ZIP 1133 kb)
DOI: 10.6084/m9.figshare.c.3833362_d2
title: Additional file 2 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: Machine learning validation on annotated ORFs. (TXT 8 kb)
DOI: 10.6084/m9.figshare.c.3833365_d1
title: Additional file 1: Figure S1. of Sexually divergent induction of microglial-associated neuroinflammation with hippocampal aging

description: Comparison of all pairwise gene expression sets. Figure S2. qPCR controls. Table S1. Cell-specific gene lists from Zhang et al. Table S2. Cell-specific gene lists from Zeisel et al. Table S3. Microglial gene lists from Hickman et al. Table S4. Gene Expression Assays. Table S5. Primary and secondary antibodies. Table S6. Transcripts differentially expressed with age. Table S7. Pathway, regulator and function changes with aging. Table S8. Transcripts differentially expressed between sexes. Table S9. Pathway, regulator and function differences between sexes. Table S10. Sex difference pathways, processes, and regulators. (ZIP 1133 kb)
DOI: 10.6084/m9.figshare.c.3833344_d4
title: Additional file 4: of Genome-wide signals of positive selection in strongylocentrotid sea urchins

description: Results of test for Positive Selection. A Microsoft Excel data file containing the summary of tests for positive selection at the 6520 single-copy orthologs. Also included are measures of codon bias (ENC and Ncâ  ) and GC content. (XLS 3051Â kb)
DOI: 10.6084/m9.figshare.c.3833362_d3
title: Additional file 3 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: Mass spectrometry results. (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3833362_d4
title: Additional file 4 of Common and phylogenetically widespread coding for peptides by bacterial small RNAs

description: BLAST hits for sRNA ORFs. (TXT 29 kb)
DOI: 10.6084/m9.figshare.c.3833371_d1.v1
title: Additional file 1: of Microsatellite marker development by partial sequencing of the sour passion fruit genome (Passiflora edulis Sims)

description: Contig sequence information, repeat motifs, primer sequences, melting temperatures and expected product sizes of 816 di-, tri- and tetra-nucleotide microsatellite markers developed for the sour passion fruit (Passiflora edulis L.). (XLSX 244Â kb)
DOI: 10.6084/m9.figshare.c.3833371_d1
title: Additional file 1: of Microsatellite marker development by partial sequencing of the sour passion fruit genome (Passiflora edulis Sims)

description: Contig sequence information, repeat motifs, primer sequences, melting temperatures and expected product sizes of 816 di-, tri- and tetra-nucleotide microsatellite markers developed for the sour passion fruit (Passiflora edulis L.). (XLSX 244Â kb)
DOI: 10.6084/m9.figshare.c.3833377_d1.v1
title: Additional file 10: of Estimation of linkage disequilibrium and effective population size in New Zealand sheep using three different methods to create genetic maps

description: Mean and variance r2 estimated for each chromosome and for 2000 genetic distance points evenly distributed between 0.05 and 50 cM (100 and 1 generations in the past, respectively). For instance, the spreadsheets for the mean r2 were coded as: meanR2rep1_CompRCPT.xlsx, where 1 indicates method 1 and “CompRCPT” indicates the corresponding breed group. The spreadsheets for the r2 variances were coded as: “varR2rep1_CompRCPT.xlsx”, for example. (ZIP 29639 kb)
DOI: 10.6084/m9.figshare.c.3833434_d1.v1
title: Additional file 1: Table S1. of Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx

description: Genotypes of replicate samples. Table S2. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PDON pool. Table S3. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PAND pool. Table S4. Basic population genetics statistics per autosomal marker for both genetic pools. Table S5. Basic population genetics statistics per X-linked marker for both genetic pools. Table S6. Results for HWE analysis per autosomal marker for the PDON pool. Table S7. Results for HWE analysis per autosomal marker for the PAND pool. Table S8. Results for HWE analysis per X-linked marker for the PDON pool. Table S9. Results for HWE analysis per X-linked marker for the PAND pool. Table S10. Hemimatrix of pairwise r 2 values between autosomal markers for the PDON pool. Table S11. Hemimatrix of pairwise r 2 values between autosomal markers for the PAND pool. Table S12. Hemimatrix of pairwise r 2 values between X-linked markers for the PDON pool. Table S13. Hemimatrix of pairwise r 2 values between X-linked markers for the PAND pool. Table S14. Hemimatrix of Kendall rank correlation τ values between HE and statistics selected to rank markers. Table S15. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of SNPs in the 343 SNP panel. Table S16. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of STRs in the 36 STR panel. Table S17. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification rates of simulated individuals in eight ancestry levels, for differently-sized and -ranked SNP and STR panels. Table S18. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification values (and percentages) of empirical individuals in eight ancestry levels, for different-sized SNP and STR panels. (XLSX 33994 kb)
DOI: 10.6084/m9.figshare.28053656
title: Spiritual Fitness Scale: Associations with Positive Mental Well-being and Depression in Poland

description: Spiritual Fitness may be defined as a set of beliefs, principles, or values that sustain an individual's well-being and purpose. It is a vital domain of the human performance optimization paradigm. The SOCOM Spiritual Fitness Scale is a psychometric questionnaire that measures three types of commitment: commitment to the pursuit of meaning, purpose, and values; service and sacrifice for the greater good; and personal connection with a higher power.
DOI: 10.17632/64fkdfcpzb.1
title: Spatially Resolved Insights Into Fistulating Crohn's Disease Pathogenesis: Data Part 2

description: Supplementary Data related to in situ Xenium spatial transcriptomics dataset.
DOI: 10.6084/m9.figshare.c.3833434_d1
title: Additional file 1: Table S1. of Novel efficient genome-wide SNP panels for the conservation of the highly endangered Iberian lynx

description: Genotypes of replicate samples. Table S2. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PDON pool. Table S3. Results of the Fisher’s exact test on differences in allele and genotype frequencies between sexes for the PAND pool. Table S4. Basic population genetics statistics per autosomal marker for both genetic pools. Table S5. Basic population genetics statistics per X-linked marker for both genetic pools. Table S6. Results for HWE analysis per autosomal marker for the PDON pool. Table S7. Results for HWE analysis per autosomal marker for the PAND pool. Table S8. Results for HWE analysis per X-linked marker for the PDON pool. Table S9. Results for HWE analysis per X-linked marker for the PAND pool. Table S10. Hemimatrix of pairwise r 2 values between autosomal markers for the PDON pool. Table S11. Hemimatrix of pairwise r 2 values between autosomal markers for the PAND pool. Table S12. Hemimatrix of pairwise r 2 values between X-linked markers for the PDON pool. Table S13. Hemimatrix of pairwise r 2 values between X-linked markers for the PAND pool. Table S14. Hemimatrix of Kendall rank correlation τ values between HE and statistics selected to rank markers. Table S15. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of SNPs in the 343 SNP panel. Table S16. Informativeness and rankings for individual identification, parentage assignment, and relatedness estimation of STRs in the 36 STR panel. Table S17. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification rates of simulated individuals in eight ancestry levels, for differently-sized and -ranked SNP and STR panels. Table S18. Summary matrices with NEWHYBRIDS’ correct, ambiguous, and cross-classification values (and percentages) of empirical individuals in eight ancestry levels, for different-sized SNP and STR panels. (XLSX 33994 kb)
DOI: 10.15468/dl.j32teh
title: Occurrence Download

description: A dataset containing 11825 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Varanus salvator (Laurenti, 1768)"
 ]
}

 The dataset includes 11825 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039270-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/tw272dvhk3.1
title: Market-based climate policy with fluctuating fossil energy prices

description: This repository provides all the necessary scripts and data to replicate the results presented in the study "Market-based Climate Policy with Fluctuating Fossil Energy Prices." The replication covers figures, tables, energy price shock estimation, and appendix plots.
DOI: 10.17632/cjgb5d9gzt.1
title: RealEnv_Aquaponics_System_Dataset

description: Real aquaponics system data with fault column that indicate system faults due to breachs in threshold values of key features like DO,nitrate,pressure.,etc.
DOI: 10.6084/m9.figshare.c.3834721_d1
title: Additional file 1: of Experimental determination of three-dimensional cervical joint mobility in the avian neck

description: Linear and angular measurements taken on CT scans of the 5 individuals used in this study. Measurements have been standardized by volume. (XLSX 27Â kb)
DOI: 10.15468/dl.ubzdu4
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Fallopia multiflora (Thunb.) Haraldson",
 "Year 1990-2024"
 ]
}

 The dataset includes 250 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039272-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10236795
title: solidworks model of motors
DOI: 10.15468/dl.c4s4hx
title: Occurrence Download

description: A dataset containing 4020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centrophorus squamosus (Bonnaterre, 1788)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 4020 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039273-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/rpf3hh2bbv.1
title: Stable design assessment tool pilot

description: Data gathered using a pilot version of the stable design assessment tool to calculate inter- and intra-rater reliability of the welfare metrics.

Publication submitted and will be linked for full methodology on publication.
DOI: 10.17632/rpf3hh2bbv.2
title: Stable design assessment tool pilot

description: Data gathered using a pilot version of the stable design assessment tool to calculate inter- and intra-rater reliability of the welfare metrics.

Publication submitted and will be linked for full methodology on publication.
DOI: 10.17632/x5cxkhz3t5.1
title: The Effects of Combined Dietary and Exercise Interventions on Neurocognitive Function -A Systematic Review and Meta-Analysis

description: Background: Recent studies have shown that the modification of lifestyle, including diet and exercise, can help to prevent neurocognitive decline. However, there is a lack of comprehensive systematic reviews on the effects of combined diet and exercise interventions on neurocognitive function.

Methods: Pubmed, Web of science, Embase, and Google Scholar were searched for randomized controlled trials (RCTS) on the effects of combined dietary and exercise interventions on neurocognitive function up to November 1, 2024. Randomized controlled trials (RCTS) on the effects of combined diet and exercise intervention on neurocognitive function were included. Standardized mean difference (SMD) and 95% confidence interval (CI) were used to express the specific effect size. The final result was a meta-analysis of the included literature data using a random effects model to analyze the specific effects of the combined diet and exercise intervention on the neurocognitive function of the participants. The quality of evidence was assessed by Grading of Recommendation, Assessment, Development, and Evaluation (GRADE).

Results: A total of 12 randomized controlled trials were included, with a total of 3603 subjects, including 2028 females (56.28%) and 1575 males (43.71%). The risk of bias in the included studies was low. Moderate-quality deterministic evidence showed that the combined diet and exercise intervention, compared with the control group, improved participants' global cognitive scores (SMD = 0.10, 95%CI: 0.03 to 0.17, p = 0.003, [I squared = 0%, p = 0.97]), memory (SMD = 0.29, 95% CI: 0.16 to 0.41, p &lt; 0.001, [I squared = 17%, p = 0.29]) and executive function (SMD = 0.49, 95% CI: 0.29 to 0.69, p &lt; 0.001, [I squared = 53%, p = 0.02]) has significant positive effect. The results of subgroup analysis showed that the combined intervention of diet and exercise had no significant effect on improving participants' overall cognitive function compared with either diet or exercise alone. The overall risk of bias of the included studies was low and the possible risk of publication bias was excluded.

Conclusion: The combined intervention strategy of diet and exercise has positive effects on improving neurocognitive function, especially on global cognitive function, memory function and executive function. However, there was no significant difference in cognitive intervention effect between the combined intervention strategy and the single intervention strategy. This means that the combined intervention of diet and exercise may not have a positive additive effect, which needs to be further verified by high-quality randomized controlled trials.
DOI: 10.6084/m9.figshare.c.3834733_d3.v1
title: Additional file 3: of Identifying and mitigating batch effects in whole genome sequencing data

description: Sample level summary statistics and annotations calculated by genotypeeval. (CSV 102Â kb)
DOI: 10.6084/m9.figshare.c.3834733_d3
title: Additional file 3: of Identifying and mitigating batch effects in whole genome sequencing data

description: Sample level summary statistics and annotations calculated by genotypeeval. (CSV 102Â kb)
DOI: 10.17632/pzbr8rtwpb.1
title: The 50 most cited articles on the biopsychosocial impact of malocclusion on children and adolescents in the school environment

description: This study aims to analyze the characteristics of the 50 most cited articles on the biopsychosocial impact of malocclusion on children and adolescents in the school environment. The Web of Science Core Collection (WoS-CC) database was searched. The extracted data included authors, publication year and country, title, the number of citations, journals, DOI, study design, index for malocclusion diagnosis, age group, sample size, biopsychosocial aspects, instruments, and keywords. A bibliometric network was created with VOSviewer and Power BI software. Descriptive analyses and Poisson regression were performed (p &lt; .05). The 50 most cited articles were selected from the 1,133 analyzed studies, totaling 1,942 citations. The Angle Orthodontist journal stood out with the most publications on the topic. The authors with the most connections were T.M. Ardenghi, S.A.S. Vedovello, F. Tomazoni, G.N. da Rosa, J.P. del Fabro, M.L. Ramos-Jorge, and S. Tuchtenhagen. Brazil published the most articles, and cross-sectional studies were the most frequent design. Cross-sectional studies performed by Brazilian authors investigating the impact of malocclusion on oral health-related quality of life prevailed. Additional longitudinal studies are required to deepen the understanding of causal relationships between malocclusion and biopsychosocial aspects.
DOI: 10.17632/bffr22c3yz.1
title: RAW DATA ON PHYSIO-CHEMICAL WATER PARAMETERS AND AQUATIC MACROINVERTEBRATES SAMPLED AT THE RIVER MPANGA, SOUTHWESTERN UGANDA

description: This is the raw data for the research project on water quality and aquatic macroinvertebrates of the River Mpanga
DOI: 10.17632/h5rhk9554m.1
title: Supplemental Methods

description: Supplemental Methods for "SCAR-ed by Antibiotics: A retrospective cohort study of severe cutaneous adverse reactions (SCAR) relative risk".
DOI: 10.17632/bffr22c3yz.2
title: RAW DATA ON PHYSIO-CHEMICAL WATER PARAMETERS AND AQUATIC MACROINVERTEBRATES SAMPLED AT THE RIVER MPANGA, SOUTHWESTERN UGANDA

description: This is the raw data for the research project on water quality and aquatic macroinvertebrates of the River Mpanga
DOI: 10.17632/zbdgtt8mmt.1
title: To fix or not to fix, the Fix: Reassessing the effectiveness of the 4pm Fix. A pre-registered study

description: R code scripts
DOI: 10.6084/m9.figshare.c.3834799_d7
title: Additional file 7: of Bacterial tail anchors can target to the mitochondrial outer membrane

description: Strains, plasmids, and oligonucleotides used during this study [24, 32, 50–56]. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3834799_d7.v1
title: Additional file 7: of Bacterial tail anchors can target to the mitochondrial outer membrane

description: Strains, plasmids, and oligonucleotides used during this study [24, 32, 50–56]. (XLS 49 kb)
DOI: 10.6084/m9.figshare.c.3834820_d3.v1
title: Additional file 3: of Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles

description: Summary of JTK-Cycle inferred cycle properties for diurnal and annual cyclic transcripts. The file can be opened in Microsoft EXCEL or any program that accepts text as tab-separated values. (TSV 3802 kb)
DOI: 10.6084/m9.figshare.c.3834820_d2.v1
title: Additional file 2: of Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles

description: Daily environmental data associated with experiment. This file includes date (mm/dd/yyyy), experiment day, Julian day, experiment week, experiment month, minimum air temperature (Â°C), maximum air temperature (Â°C), mean daily air temperature (Â°C), daily precipitation (mm), day length (h:m:s), and the daily sum of solar radiant exposure (MJ/m2). The file can be opened in Microsoft EXCEL or any program that accepts text as tab-separated values. (TSV 20 kb)
DOI: 10.5281/zenodo.14514684
title: Best Model Parameters for T-ALPHA: A Hierarchical Transformer-Based Deep Neural Network for Protein-Ligand Binding Affinity Prediction With Uncertainty-Aware Self-Learning for Protein-Specific Alignment

description: This archive contains the best-performing model parameters for T-ALPHA, a hierarchical transformer-based deep neural network designed for protein-ligand binding affinity prediction.

Usage:

These model parameters can be directly used for inference with the accompanying codebase available on GitHub.

Associated Resources:



GitHub Repository: [Link to GitHub repo]

Full Dataset and Processed Files: [Zenodo link to datasets]


For detailed instructions on how to use these parameters, please refer to the GitHub repository and the accompanying README file.
DOI: 10.5281/zenodo.14514685
title: Best Model Parameters for T-ALPHA: A Hierarchical Transformer-Based Deep Neural Network for Protein-Ligand Binding Affinity Prediction With Uncertainty-Aware Self-Learning for Protein-Specific Alignment

description: This archive contains the best-performing model parameters for T-ALPHA, a hierarchical transformer-based deep neural network designed for protein-ligand binding affinity prediction.

Usage:

These model parameters can be directly used for inference with the accompanying codebase available on GitHub.

Associated Resources:



GitHub Repository: [Link to GitHub repo]

Full Dataset and Processed Files: [Zenodo link to datasets]


For detailed instructions on how to use these parameters, please refer to the GitHub repository and the accompanying README file.
DOI: 10.6084/m9.figshare.c.3834862_d5.v1
title: Additional file 14: Table S12. of Oncogenic long noncoding RNA landscape in breast cancer

description: TINCR is negatively expressed with several genes involved in apoptosis pathway via analysis of TCGA breast cancer data. (XLSX 657Â kb)
DOI: 10.17632/h2hzgk54fx.1
title: Effects of ammonium on methane oxidation

description: Soil data, headspace gas data, and microbial data during laboratory incubation.
DOI: 10.17632/k88gyzgh24.1
title: Multivariable Linear Regression Model. Outcome is definitive time to surgery (days).

description: Supplementary Table 2 for manuscript "Factors associated with time to treatment for definitive surgery for Sebaceous Carcinoma"
DOI: 10.6084/m9.figshare.c.3834862_d5
title: Additional file 14: Table S12. of Oncogenic long noncoding RNA landscape in breast cancer

description: TINCR is negatively expressed with several genes involved in apoptosis pathway via analysis of TCGA breast cancer data. (XLSX 657Â kb)
DOI: 10.17632/43hgpkr9rj.1
title: Comparison of TTDS of Sebaceous Carcinoma between racial groups within stage and insurance

description: Supplementary Table 1 for manuscript "Factors associated with time to treatment for definitive surgery for Sebaceous Carcinoma"
DOI: 10.17632/j9h8z3zvwx.1
title: Data on Incubator Students at Higher Education

description: This data contains information about the role of business and entrepreneurship courses, investment intentions, mentoring programs, and business idea opportunities for students in the context of higher education.
DOI: 10.17632/tbdm4939z5.1
title: Research Data - Paper: Open Government Data in health sector: A systematic literature review

description: Research Data - Paper: Open Government Data in health sector: A systematic literature review