cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25885234.v1
title: Supplementary Material for: Acute Leriche syndrome mimicking spinal cord infarction: a case report

description: Introduction: Acute Leriche syndrome is a rare but potentially life-threatening condition. Pain, pallor, and coldness of the lower extremities serve as clues for suspecting Leriche syndrome. However, the absence of these findings may pose a diagnostic challenge. Case presentation: An 83-year-old man presented at our emergency department with a complaint of sudden-onset paraparesis. Initially, spinal cord infarction was suspected due to clinical course and neurological findings, but thoracolumbar MRI showed normal findings. On admission, symptoms associated with aortoiliac occlusion were not present, except for muscle atrophy in the thigh. CT angiography revealed aortoiliac occlusion, leading to a diagnosis of Leriche syndrome. Conclusion: Leriche syndrome should be considered as a potential differential diagnosis in patients with acute paraparesis. Muscle atrophy of the lower limbs disproportionate to the clinical course may be the clue for suspecting acute Leriche syndrome with symptoms related to atherosclerotic occlusion are inconspicuous.
DOI: 10.6084/m9.figshare.25347760.v1
title: <b>Widespread crab burrows weaken coastal blue carbon sinks</b>

description: Investigation data on crab burrows (scale of large climate gradient, from China).The data includes：Particle size, environmental variables, soil organic carbon (SOC), soil organic matter (SOM), and light-heavy fraction organic carbon (L-HFOC) of 106 sediment samples (burrow or matrix).GHGs emission rate, GHGs cumulative flux, and enzyme activity of 34 sediment samples (incubation experiment).<br>
DOI: 10.17632/drh9669vc3
title: Data-Driven Decision Model for Machine Learning Model Selection

description: Context: Machine learning methods are easily accessible and widely used, given how straightforward they are to employ on a predictive modeling dataset. While the performance of these libraries is stable, the challenge exists for a data scientist to choose the correct combinations of models for their machine learning domain related task. Besides sufficient performance, we consider many machine learning model related features.
Method: To address this challenge, we present a meta-model for the decision-making process in the context of machine learning model selection. the creation of this decision model adopts a systematic research approach, combining systematic literature review , expert interviews, case studies, and design science to investigate machine learning model selection approaches. Where the systematic literature review enables us to gather and analyze relevant information from existing literature. The expert interviews allow a critical approach to our collected data. the case studies help us to assess the practical applicability of our findings. And the design science allows for the finalization of a decision model. 
Results: Our study analyzed 43 common models across 72 common features. We provide a comprehensive machine learning taxonomy, featuring machine learning paradigms, approaches, and domains. We provide insights into potential model combinations, trends in model selection, quality concerns, evaluation measures, and frequently used datasets for training and evaluating these models. 
Contribution: Our study shows the effectiveness and robustness of our decision model, contributing practical insight and comprehensive understanding to the field of machine learning model selection. We highlight the importance of further development of the decision model, to improve its accuracy and scope beyond its current state.
DOI: 10.6084/m9.figshare.14853939.v2
title: Smoking Data of hospitalized Covid-19 patients

description: Data related to 1040 patients with Covid-19 admitted to hospitals in Iran have been collected. These patients were randomly selected from patients admitted to hospitals in Rasht, Tehran, and Bojnord. Of these 1040 patients, 375 of them are female, and 665 of them are male. Also, the age of these people is between 14 and 91 years, and the average age is about 54 years.
DOI: 10.6084/m9.figshare.20044050.v1
title: Prediction of rapid maxillary expansion by assessing the maturation of the midpalatal suture on cone beam CT

description: ABSTRACT Rapid maxillary expansion (RME) primarily involves the mechanical opening of the midpalatal suture of the maxillary and palatine bones. The fusion of the midpalatal suture determines the failure of RME, a common event in late adolescents and young adults. Recently, the assessment of the maturation of midpalatal suture as viewed using cone beam computed tomography (CBCT) has been introduced. Five maturational stages of the midpalatal suture have been presented: Stage A = straight high-density sutural line, with no or little interdigitation; Stage B = scalloped appearance of the high-density sutural line; Stage C = two parallel, scalloped, high-density lines that lie close to each other, separated in some areas by small low-density spaces; Stage D = fusion of the palatine bone where no evidence of a suture is present; and Stage E = complete fusion that extends also anteriorly in the maxilla. At Stage C, less skeletal response would be expected than at Stages A and B, as there are many bony bridges along the suture. For patients at Stages D and E, surgically assisted RME would be necessary, as the fusion of the midpalatal suture already has occurred either partially or totally. This diagnostic method can be used to estimate the prognosis of the RME, mainly for late adolescents and young adults for whom this procedure is unpredictable clinically.
DOI: 10.6084/m9.figshare.28344692.v2
title: <b>AntiFreezeDomains</b>

description: AntiFreezeDomains is a high-quality dataset dedicated to the prediction and study of Antifreeze Proteins (AFPs). It is constructed by comprehensively collecting and annotating existing Antifreeze Protein sequences using innovative data filtering and tag annotation strategies. The dataset not only covers sequences from mainstream datasets (e.g., DatasetS and DatasetR), but also provides detailed structural domain annotations for each antifreeze protein through the InterPro website, making it the most comprehensively annotated dataset available.
DOI: 10.6084/m9.figshare.3113413.v1
title: Turbine Attitudes Survey Data.xlsx

description: Dataset from a survey of public attitudes towards small wind turbines in the UK in 2013-2014. The survey focussed on the acceptability of small wind turbines in different settings and factors that explained acceptance, as well as any concerns.The data is split into sections that match the sections of the questionnaire, as well as further coding of comments made by respondents. The questionnaire is available in the supplementary material of the following paper: Tatchley <i>et al. </i>2016 Drivers of public attitudes towards small wind turbines in the UK. PLOS ONE <i>(in press). </i>Further detail on the coding of responses is presented in the first tab of the spreadsheet.
DOI: 10.6084/m9.figshare.13516487.v4
title: Xibalbá: Underground Temperature Database

description: Database containing the borehole temperature profiles used in the publication "Cuesta-Valero F.J., García-García A., Beltrami H., González-Rouco J.F., and García-Bustamante E. (2020). Long-Term Global Ground Heat Flux and Continental Heat Storage from Geothermal Data. Clim. Past Discuss. [preprint], doi:10.5194/cp-2020-65"<br>
DOI: 10.6084/m9.figshare.22691452.v1
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.3543905.v1
title: Appendix B. Detailed summary of the relative bias, standard error, and mean square error of the integrated and conventional analyses.

description: Detailed summary of the relative bias, standard error, and mean square error of the integrated and conventional analyses.
DOI: 10.6084/m9.figshare.19130768.v1
title: Dataset 8_4.csv

description: Fitting data for the reflection coefficient curve for sample #6 at the wavelength 0.154 nm
DOI: 10.6084/m9.figshare.28378643.v1
title: Base de dados ''Sonolência Diurna, Qualidade do Sono e Sarcopenia em Pessoas Idosas_ Relações com Quedas''.

description: Os objetivos deste estudo foram analisar a correlação entre a sonolência diurna excessiva, qualidade do sono, força de preensão palmar e quedas em pessoas idosas com e sem risco de surgimento de sarcopenia.
DOI: 10.6084/m9.figshare.19499996.v2
title: patches and local annotations, slide 116, zoom 124x124 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.25727214.v1
title: Miami indoor heat study code

description: Data and code to reproduce the analysis of Turek-Hankins et al. (in review) Interactions between indoor heat and energy affordability amplify household risks.
DOI: 10.6084/m9.figshare.5552767.v2
title: PDAC_WGS_Processed_Data

description: This dataset is linked to the following publication: <b>Whole Genomes Define Concordance of Matched Primary, Xenograft, and Organoid Models of Pancreas Cancer</b><b><br></b> The Zipped folder contains processed WGS data pertaining to SSM, SV, and CNV analysis of WGS data for PDAC.<br><br><b>Corresponding authors:</b> Dr. Deena Gendoo, email: deena.gendoo1984@gmail.com<br>Dr. Steven Gallinger, email: steven.gallinger@uhn.ca<br>Dr. Benjamin Haibe-Kains, email: benjamin.haibe.kains@utoronto.ca<br><br><br><br> Dr. Steven Gallinger & Dr. Benjamin Haibe-Kains are co-last authors of this publication. <b><br></b><b><br></b><br><br>
DOI: 10.17632/3dpw885w4x
title: Greenhouse agricultural plastic waste mapping database

description: This dataset consists of the coordinates of plots and the area in square meters covered by agricultural greenhouses in the Republic of Cyprus, an EU member state. The collection of the data is included in sixteen tables separated per geographical area-cluster. The agricultural plastic waste (APW) detailed mapping was conducted with the use of up-to-date statistics from Cyprus Agricultural Payments Organization (CAPO), geographic information system (GIS) and satellite imagery.
DOI: 10.6084/m9.figshare.24082233.v1
title: Canadian Road Network File for 2021 (shp)

description: This shape file was used to develop the network analysis necessary to perform this analysis in ArcGIS Pro v 3.0.3
DOI: 10.6084/m9.figshare.28646222.v1
title: Transcriptome fasta file

description: Fasta sequence of transcriptome used for quantification
DOI: 10.6084/m9.figshare.20233740.v1
title: Data & Code for Moore et al. 2023: "Temperate species underfill their tropical thermal potentials on land"

description: Files included here are:<b>Moore-et-al-2023_MinimumDataset.xls</b><br><i>A minimum dataset needed to reproduce the main analyses in "</i><i>Temperate species underfill their tropical thermal potentials on land" </i><i>(Moore et al. 2023)</i><b>living-up-to-thermal-potentials.zip</b><br><i>An archived version of the Github repository at the time of publication, including code and data needed to reproduce analyses</i><b>large-files</b><br><i>A folder of large source and intermediate data files needed to reproduce all analyses using code published in the Zenodo Github archive</i>
DOI: 10.6084/m9.figshare.5771484.v1
title: Contrast microscopy of corneal endothelial cells proliferation uncoated, collagen and Matrigel-coated plates

description: Six White New Zealand rabbits 3-month-old were sacrificed under general anesthesia and a lethal intracardiac injection of sodic pentobarbital. A corneoscleral rim excision was made and the conjunctiva was dissected. Lens and aqueous humor were removed and the corneas were obtained. Under sterile conditions, Descemet’s membrane were separated from corneal stroma and rinsed with basal stabilizer medium (SM) containing OptiMEM-I 8% fetal bovine serum (FBS) and 1% antibiotics. Corneal endothelia were peeled off from the Descemet’s membrane and a ~5 mm2 section was cultured in proliferative medium (PM) containing OptiMEM-I 8% FBS, 20 ng/mL of nerve growth factor (NGF), 5 ng/mL of epidermal growth factor (EGF), 200 µg/L of calcium chloride, 20 µg/mL of ascorbic acid, 0.08% chondroitin sulfate, and antibiotics over Matrigel, Collagen I or no coated plate until confluence (~90% of the plate showed adherent cells, ~15 days). The plates were tripzinised and cultured in SM. Morphological changes were photodocumented. RNA was isolated from CEC cultured in PM and SM. Final point RT-PCRs were made to analyze the expression of the specific CECs markers: glypican-4 (GPC4), tight junction protein 1 (TJP1), and CD200; housekeeping gene glyceraldehyde phosphate dehydrogenase (GAPDH) was used. Electrophoresis of PCR products was performed on a 2% agarose gel and the bands were photodocumented. Immunocytochemistry was performed to analyze the presence of GPC4 and Na/K-ATPase in CEC cultured in each condition. Images were obtained with a fluorescence inverted microscope.
DOI: 10.6084/m9.figshare.5868825.v1
title: Example carrier sequencing fastQ data set for CarrierSeq

description: fastQ files with preserved headers containing channel information. The multiple files must first be combined into a single FastQ file prior to analysis (e.g., cat *.fastq &gt; all_reads.fastq). Concatenated md5: 26ce52582bfcf24c41082ef44224107c<br>0.2 ng of B. subtilis DNA prepared with 1000 ng of Lambda DNA using the Oxford Nanopore Technologies ligation sequencing kit - LSK-SQK108.The library was then sequenced on a MinION Mark-1B sequencer and R9.4 flowcell for 48 hours and basecalled using ONTs Albacore v1.10 offline basecaller.
DOI: 10.15468/dl.4tqemu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((-9.5482 4.7175,-9.0352 4.4397,-9.0352 10.8496,-16.709 10.8496,-16.3297 10.5455,-15.1301 10.2973,-14.7679 9.8172,-14.3248 9.5834,-14.2456 9.1632,-13.8032 8.9309,-13.7341 8.0101,-13.3252 7.2036,-11.9532 6.6399,-11.0468 5.863,-10.545 5.6439,-9.5482 4.7175))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013363-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.28921178.v1
title: Supplementary Material for: Biomarkers associated with worsening renal function and progression in chronic kidney disease among patients hospitalized for acute heart failure

description: INTRODUCTION: Worsening renal function (WRF) is associated with poor prognosis in patients with heart failure (HF). Osteopontin (OPN) and Matrix extracellular phosphoglycoprotein (MEPE) are expressed in the kidneys and are involved in bone mineralization processes. Higher OPN levels have been associated with a higher risk for adverse outcomes in patients with chronic kidney disease (CKD), and MEPE has been shown to promote renal phosphate excretion. Here, we explored if MEPE and OPN are associated with WRF and CKD in patients admitted for acute HF.

METHODS: WRF was defined as an increase in plasma creatinine of &gt;26.5 mmol/L or 50% higher than admission concentration within 48 hours of admission. OPN and MEPE were analyzed in 315 HF patients at baseline, and in 120 patients at 6-month follow-up. Associations between MEPE and OPN, and a) WRF, b) CKD stage 3-5, and c) markers of kidney function were explored. Further, OPN and MEPE at baseline and at 6 month follow-up (delta (Δ) values) were related to CKD progression. 

RESULTS: The study population had a mean age of 75 (±12) years and 31% were women. Higher levels of MEPE and OPN were associated with WRF (n=30; OR 2.80 (1.49-5.25); p=0.001, and OR 1.84; (1.05-3.23); p=0.034, respectively)). On admission, both MEPE and OPN were associated with CKD stage 3-5 (OR 5.27; (2.76-10.07); p&lt;0.001, and OR 3.26; (1.90-5.60); p&lt;0.001, respectively)). At 6-month follow-up, progression in CKD stage was associated with ΔMEPE and ΔOPN (HR 2.53; (1.48-4.31); p&lt;0.001, and HR 2.66; (1.51-4.71); p&lt;0.001)). 

CONCLUSION: Here, MEPE and OPN are for the first time shown to be independently associated with WRF and subsequent deterioration in CKD in a HF cohort. The mechanisms of these associations are currently largely unknown and need to be investigated further.
DOI: 10.17632/cdsjpvmxt6
title: Data: Is India’s Higher Education System a Case of Elusive Inclusive Development?

description: The data is to support the analysis and graphs in the paper . It contains state-wise Gross Enrollment Ratio , number of colleges per lakh population, Number of colleges and Universities since 2000 to 2021.Total Gender enrollment in Higher education and share of schedule castes and schedule tribes in higher education enrollment.
DOI: 10.6084/m9.figshare.3543884.v1
title: Appendix C. Details on using conditional logistic regressions to estimate Step Selection Functions.

description: Details on using conditional logistic regressions to estimate Step Selection Functions.
DOI: 10.17632/gfby9zc3yh
title: Evolution of Travel Mobility in Lisbon: 1937-2022

description: This database was produced as part of the project Hi-BicLab. History Lab for Sustainable Urban Mobilities: Lisbon's cycling policies, funded by FCT (Fundação para a Ciência e a Tecnologia, I.P.) under the grant number EXPL/FER-HFC/0847/2021, http://doi.org/10.54499/EXPL/FER-HFC/0847/2021. 
It provides historical data on the supply and demand for the different transport modes operating in Lisbon municipality and Lisbon District. The transport modes considered refer to individual transport (i.e., cycling and driving) and public transport, and excludes walking due to data unavailability. The data collected covers the period from 1937 to 2022 and is organised in 5-year periods between 1940 and 2020. The starting year is 1937 because this was the first year in which a census of road traffic, including motor vehicles, was carried out in Portugal. The final year is 2022 because the year 2020 was marked by the Covid-19 pandemic, which had a dramatic effect on both transport demand and transport supply. 
Transport demand is measured in terms of the number of passengers transported by a given operator for public transport (buses and trams; rail; ferries; metro), the average annual daily traffic (AADT) for passenger cars and bicycles, the stock of passenger cars and of bicycles, the number of passenger cars and of bicycles per 1000 inhabitants. In the case of ferryboats, the data also considers the number of passenger vehicles transported. Transport supply is measured in terms of the total seat kilometres (seat-kms) produced by public transport operators, and the length of the main road network (i.e., motorways, main expressways, and secondary expressways) in the case of individual motorised transport.
DOI: 10.6084/m9.figshare.22313569.v2
title: Genome haplotype assembly and annotation of Quercus variabilis

description: Haplotype-resolved genome assembly and annotation of Quercus variabilis: genome.fasta.a.gz: genome assembly of haplotype A genome.fasta.b.gz: genome assembly of haplotype B genome.fasta.out.a.rm.gff3.gz: repeat annotation of haplotype A genome.fasta.out.b.rm.gff3.gz: repeat annotation of haplotype B final.gene.gff3.a.gz: gene structure annotation of haplotype A final.gene.gff3.b.gz: gene structure annotation of haplotype B final.gene.cds.fa.a.gz: CDS sequences of haplotype A final.gene.cds.fa.b.gz: CDS sequences of haplotype B final.gene.pep.faa.a.gz: Protein sequences of haplotype A final.gene.pep.faa.b.gz: Protein sequences of haplotype B gene_annotation_combined.a.xls.gz: gene function annotation of haplotype A gene_annotation_combined.b.xls.gz: gene function annotation of haplotype B
DOI: 10.6084/m9.figshare.24080745.v1
title: Sample_data_Mallard.csv

description: eBird 2020 test data of species Mallard. Each point assigned with environmental variables.
DOI: 10.6084/m9.figshare.26089347.v1
title: HiGTS_2020s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2020s3 contains the data from July 1, 2020 to September 30, 2020.
DOI: 10.6084/m9.figshare.5129785.v1
title: Supplementary Material for: Chronic Urticaria in Returning Travellers: The Role of Anthelmintic Treatment

description: <b><i>Background:</i></b> Chronic urticaria often poses a therapeutic challenge. The human immune response to helminths has a high degree of similarity to an allergic response in terms of skin manifestations, eosinophilia, and IgE elevation. Unfortunately, it is often complicated to diagnose such infections. <b><i>Objective:</i></b> We sought to assess the effect of empirical anthelmintic treatment among returning travellers diagnosed with chronic urticaria, without clear proof of helminthic infection. <b><i>Methods:</i></b> This is a retrospective case series of 19 returning travellers with chronic urticaria. All patients were treated with anthelmintic treatment given based on clinical suspicion only. A randomly selected control group of 20 patients with chronic urticaria, with no history of travel, was also enrolled. <b><i>Results:</i></b> A positive clinical response was reported in 68.4% (13 patients) of the travellers' group within 3 months after treatment with anthelmintic therapy compared with 10% (2 patients) of chronic urticaria patients in the control group. No adverse effects from treatment were recorded. <b><i>Conclusion:</i></b> In patients with chronic urticaria, travel history to developing countries must be obtained. Empiric anthelmintic therapy might be beneficial, even in the absence of findings suggestive of helminthic infection.
DOI: 10.17632/gdnk8t2kk4
title: Heavy Mo–Mg–O isotopes anomaly observed in arc magmatism: Serpentinites fingerprint in subduction zone magmatism

description: supplementary data