cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23502372.v2
title: ORDerly supplementary datasets

description: Supplementary datasets used in ORDerly (i.e. the non-benchmark datasets)Condition prediction datasets: Contains parquet files for each of the four flavours of ORDerly-condition datasets that we used in the ORDerly paper. Also contains .json showing the parameters used in cleaning and .log showing the impact on dataset size after each cleaning step.Transformer datasets: Contains plain txt files with the six transformer-ready datasets that were used for training/testing with Molecular Transformer. We also included the predictions made by the trained Molecular Transformer on the test set so you can verify our results.Paper: https://chemrxiv.org/engage/chemrxiv/article-details/64ca5d3e4a3f7d0c0d78ca42Code: https://github.com/sustainable-processes/orderlyThe ORDerly benchmark datasets can be found here: https://figshare.com/articles/dataset/ORDerly_chemical_reactions_condition_benchmarks/23298467Please feel free to contact me, Daniel Wigh, at dsw46@cam.ac.uk in case of any questions.
DOI: 10.6073/pasta/0ed4b60c76672dada07f781f7bb1e558
title: Global Climate Change Impacts on the Vegetation and Fauna of Mangrove Forested Ecosystems in Florida (FCE): Nekton Mass from March 2000 to April 2004

description: Bottomless lift nets are buried within the mangrove forest floor and raised remotely on slack high spring tides to enclose a 6m2 area. As the tide ebbs, fishes retreat into a subtidal refuge cleared when the tide has fallen. Three replicate nets have been sampled at 3 locations along a salinity gradient on Shark River for 4 years. Small resident forage fish and grass shrimp dominate the collections. Exotic species and estuarine transient species that use the estuary as a nursery are rare within the assemblage of fishes that routinely use the flooded forest.
DOI: 10.5281/zenodo.10622231
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Douglas Abercrombie McBeath Craig, http://www.wikidata.org/entity/Q21394101. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21394101
DOI: 10.5281/zenodo.8030773
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Douglas Abercrombie McBeath Craig, http://www.wikidata.org/entity/Q21394101. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21394101
DOI: 10.5281/zenodo.10608394
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Georg Dieck, http://www.wikidata.org/entity/Q96299. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q96299
DOI: 10.5281/zenodo.10608393
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Georg Dieck, http://www.wikidata.org/entity/Q96299. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q96299
DOI: 10.5281/zenodo.10622239
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Georg Dieck, http://www.wikidata.org/entity/Q96299. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q96299
DOI: 10.5281/zenodo.10615139
title: A Multi-domain Benchmark for Personalized Search Evaluation

description: This dataset represents a new version to the original dataset found on Zenodo with DOI 10.5281/zenodo.6606557, tailored for Personalized Search evaluation across multiple domains. It has been generated using a fork (here) of the original experiment hosted in AmenRa's repository. The fork introduces modifications steps to the data processing steps, specifically optimized to reduce memory consumption. These adjustments enable the dataset generation process to be executed on hardware with limited resources, requiring no more than 30 GB of RAM and 16 CPU cores, and designed to complete within a timeframe of 1.5 days.
DOI: 10.5281/zenodo.6606556
title: A Multi-domain Benchmark for Personalized Search Evaluation

description: We provide large-scale multi-domain benchmark datasets for Personalized Search. Further information can be found here.
DOI: 10.5281/zenodo.10076766
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roy Snelling, http://www.wikidata.org/entity/Q7373383. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7373383
DOI: 10.5281/zenodo.10582374
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roy Snelling, http://www.wikidata.org/entity/Q7373383. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7373383
DOI: 10.5281/zenodo.10622245
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roy Snelling, http://www.wikidata.org/entity/Q7373383. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7373383
DOI: 10.5281/zenodo.8053477
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roy Snelling, http://www.wikidata.org/entity/Q7373383. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7373383
DOI: 10.5281/zenodo.8053478
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roy Snelling, http://www.wikidata.org/entity/Q7373383. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7373383
DOI: 10.5281/zenodo.10622246
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Eduard Pechuël-Loesche, http://www.wikidata.org/entity/Q111780. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q111780
DOI: 10.5281/zenodo.8320498
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Eduard Pechuël-Loesche, http://www.wikidata.org/entity/Q111780. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q111780
DOI: 10.5281/zenodo.8320499
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Eduard Pechuël-Loesche, http://www.wikidata.org/entity/Q111780. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q111780
DOI: 10.5281/zenodo.10608387
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Charles Winnecke, http://www.wikidata.org/entity/Q43644654. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q43644654
DOI: 10.5281/zenodo.10608388
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Charles Winnecke, http://www.wikidata.org/entity/Q43644654. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q43644654
DOI: 10.5281/zenodo.10622249
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Charles Winnecke, http://www.wikidata.org/entity/Q43644654. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q43644654
DOI: 10.5281/zenodo.10607073
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Alexandra Seglias, https://orcid.org/0000-0002-2756-7088. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.10607074
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Alexandra Seglias, https://orcid.org/0000-0002-2756-7088. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.10622252
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Alexandra Seglias, https://orcid.org/0000-0002-2756-7088. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.10592778
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bernt Løppenthin, http://www.wikidata.org/entity/Q11854149. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q11854149
DOI: 10.5281/zenodo.10592779
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bernt Løppenthin, http://www.wikidata.org/entity/Q11854149. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q11854149
DOI: 10.5281/zenodo.10622253
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Bernt Løppenthin, http://www.wikidata.org/entity/Q11854149. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q11854149
DOI: 10.5281/zenodo.10614145
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Dennis Spiker, http://www.wikidata.org/entity/Q124419071. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q124419071
DOI: 10.5281/zenodo.10614146
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Dennis Spiker, http://www.wikidata.org/entity/Q124419071. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q124419071
DOI: 10.5281/zenodo.10622254
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by William Dennis Spiker, http://www.wikidata.org/entity/Q124419071. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q124419071
DOI: 10.6084/m9.figshare.25148827
title: Dataset 1 from Evolutionary trade-offs between testes size and parenting in Neotropical glassfrogs

description: Information collected directly for us during fieldwork or provided by collections in Ecuador and Brazil.
DOI: 10.6084/m9.figshare.25148827.v1
title: Dataset 1 from Evolutionary trade-offs between testes size and parenting in Neotropical glassfrogs

description: Information collected directly for us during fieldwork or provided by collections in Ecuador and Brazil.
DOI: 10.5281/zenodo.8298491
title: Handful of Pixels - machine learning data

description: Training and testing data within the context of the "Handful of Pixels" course, and in particular the Land-Use and Land-Cover mapping chapter. The data included samples 300 random locations across 10 land cover classes from the data described in Fritz et al. 2017, and downloaded through the AppEEARS API using the {appeears} R package (Hufkens et al. 2023). A 80% split is executed on this larger dataset with 240 locations retained for training, while the remainder is used for testing purposes. For the testing data the input data is shared, the labels are withheld (stored in a closed release of this archive, and accessible on reasonable request). This data can be used within the context of small demonstration machine learning exercises or competitions. <strong>Data structure</strong> The data contains all seven (7) bands of the MODIS MCD43A4 data product for the year 2012. Band names are indicated in full. In addition MODIS MOD11A2 daytime land surface temperature (LST) data is provided, where band names only contain the date (YYYY-MM-DD) of acquisition. Additional indices can be calculated from these band combinations if so desired. Data is provided in compressed serialized R rds files, and can be read into R as follows: <pre><code>df &lt;- readRDS("training_data.rds")</code></pre> <strong>References</strong> Fritz, Steffen, Linda See, Christoph Perger, Ian McCallum, Christian Schill, Dmitry Schepaschenko, Martina Duerauer, et al. “A Global Dataset of Crowdsourced Land Cover and Land Use Reference Data.” <em>Scientific Data</em> 4, no. 1 (June 13, 2017): 170075. https://doi.org/10.1038/sdata.2017.75. Koen Hufkens. (2023). bluegreen-labs/appeears: appeears: an interface to the NASA AppEEARS API (v1.0). Zenodo. https://doi.org/10.5281/zenodo.7958270
DOI: 10.5281/zenodo.8298469
title: Handful of Pixels - machine learning data

description: Training and testing data within the context of the "Handful of Pixels" course, and in particular the Land-Use and Land-Cover mapping chapter. The data included samples 300 random locations across 10 land cover classes from the data described in Fritz et al. 2017, and downloaded through the AppEEARS API using the {appeears} R package (Hufkens et al. 2023). A 80% split is executed on this larger dataset with 240 locations retained for training, while the remainder is used for testing purposes. For the testing data the input data is shared, the labels are withheld (stored in a closed release of this archive, and accessible on reasonable request). This data can be used within the context of small demonstration machine learning exercises or competitions. <strong>Data structure</strong> The data contains all seven (7) bands of the MODIS MCD43A4 data product for the year 2012. Band names are indicated in full. In addition MODIS MOD11A2 daytime land surface temperature (LST) data is provided, where band names only contain the date (YYYY-MM-DD) of acquisition. Additional indices can be calculated from these band combinations if so desired. Data is provided in compressed serialized R rds files, and can be read into R as follows: <pre><code>df &lt;- readRDS("training_data.rds")</code></pre> <strong>References</strong> Fritz, Steffen, Linda See, Christoph Perger, Ian McCallum, Christian Schill, Dmitry Schepaschenko, Martina Duerauer, et al. “A Global Dataset of Crowdsourced Land Cover and Land Use Reference Data.” <em>Scientific Data</em> 4, no. 1 (June 13, 2017): 170075. https://doi.org/10.1038/sdata.2017.75. Koen Hufkens. (2023). bluegreen-labs/appeears: appeears: an interface to the NASA AppEEARS API (v1.0). Zenodo. https://doi.org/10.5281/zenodo.7958270
DOI: 10.5281/zenodo.8260038
title: Hesperomys Project v23.8.0

description: An export of data from the Hesperomys Project version 23.8.0. The Hesperomys Project is a database of taxonomy and nomenclature, focused on mammals but also covering some other groups, principally other fossil tetrapods. The database contains information such as: Taxonomic classification for all mammals, living and extinct References to original citations for the vast majority of names Type specimens and type localities for numerous names The full database is available online at hesperomys.com. This export contains: name.csv: Data on names, including taxonomic context, authority, citation, type locality, type specimen, and classification of the etymology. taxon.csv: Data on taxa, including classification and authority collection.csv: Data on collections that contain type specimens, including name, location, and number of type specimens in the database The code used to generate the exports is on GitHub. Release notes for version 23.8.0: Database Add issue numbers to several hundred articles (mostly in <em>Annals and Magazine of Natural History</em> and <em>Proceedings of the Zoological Society of London</em>). Correct a few publication dates and issue numbers. Add original citations for all names described in the <em>Journal of the Bombay Natural History Society</em>. Add a few dozen missing type localities for synonyms of extant mammal species. Add numerous additional type specimens for extant mammals, based mostly on online collection databases. Add thousands of links to type specimen catalog entries, mostly in BMNH, MNHN, and MCZ. Numerous new taxonomic changes and newly examined old literature. Backend Add capability to mark the former repository of a type specimen (see e.g. FMSM). Enforce a consistent format for the type specimen field. Add the capability to enforce a more precise format for individual collections. Enforce that names have only one value for e.g. the "age" tag for type specimens. Use the "IssueDate" mechanism to infer what issue papers were published in. Frontend Add new page listing the newest additions to the database (e.g., new names).
DOI: 10.5281/zenodo.8260037
title: Hesperomys Project v23.8.0

description: An export of data from the Hesperomys Project version 23.8.0. The Hesperomys Project is a database of taxonomy and nomenclature, focused on mammals but also covering some other groups, principally other fossil tetrapods. The database contains information such as: Taxonomic classification for all mammals, living and extinct References to original citations for the vast majority of names Type specimens and type localities for numerous names The full database is available online at hesperomys.com. This export contains: name.csv: Data on names, including taxonomic context, authority, citation, type locality, type specimen, and classification of the etymology. taxon.csv: Data on taxa, including classification and authority collection.csv: Data on collections that contain type specimens, including name, location, and number of type specimens in the database The code used to generate the exports is on GitHub. Release notes for version 23.8.0: Database Add issue numbers to several hundred articles (mostly in <em>Annals and Magazine of Natural History</em> and <em>Proceedings of the Zoological Society of London</em>). Correct a few publication dates and issue numbers. Add original citations for all names described in the <em>Journal of the Bombay Natural History Society</em>. Add a few dozen missing type localities for synonyms of extant mammal species. Add numerous additional type specimens for extant mammals, based mostly on online collection databases. Add thousands of links to type specimen catalog entries, mostly in BMNH, MNHN, and MCZ. Numerous new taxonomic changes and newly examined old literature. Backend Add capability to mark the former repository of a type specimen (see e.g. FMSM). Enforce a consistent format for the type specimen field. Add the capability to enforce a more precise format for individual collections. Enforce that names have only one value for e.g. the "age" tag for type specimens. Use the "IssueDate" mechanism to infer what issue papers were published in. Frontend Add new page listing the newest additions to the database (e.g., new names).