cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.669646.v1
title: Making Waves Round a Structured Cloak

description: The files presented here represent the supplimentary material for the pre-print entitled "Making Waves Round a Structured Cloak: <em>Lattices, Negative Refraction and Fringes</em>". <strong>Abstract</strong> Using the framework of transformation optics, this paper presents a detailed analysis of a non-singular square cloak for acoustic, out-of-plane shear elastic, and electromagnetic waves.The generating map is examined in detail and linked to the material properties of the cloak. Analysis of wave propagation through the cloak is presented and accompanied by numerical illustrations. The efficacy of the regularised cloak is demonstrated and an objective numerical measure of the quality of the cloaking effect is provided. It is demonstrated that the cloaking effect persists over a wide range of frequencies. As a demonstration of the effectiveness of the regularised cloak, a Young's double slit experiment is presented. The stability of the interference pattern is examined when a cloaked and uncloaked obstacle are successively placed in front of one of the apertures. This novel link with a well-known quantum mechanical experiment provides an additional method through which the quality of cloaks may be examined. In the second half of the paper, it is shown that an approximate cloak may be constructed using a discrete lattice structure. The geometry and material properties of the lattice are derived from the continuum cloak. The efficiency of the approximate lattice cloak is analysed and a series of illustrative simulations presented. It is demonstrated that effective cloaking may be obtained by using a relatively simple lattice structure, particularly in the low frequency regime. For further information, please see the preprint (http://arxiv.org/abs/1304.1365)
DOI: 10.17632/ns4bby8s6m
title: Image-based Data on Strain Fields of Microstructures with Porosity Defects_3

description: This dataset is one of the three datasets that are utilized in the research, 'Predicting elastic strain fields in defective microstructures using image colorization algorithms' submitted for publication in the Computational Material Science Journal. This is a part of supplementary data for the Data in Brief article co-submitted alongside the aforementioned paper in Computational Material Science Journal. The data file is a MATLAB Binary Data Compressed file (.mat) that contains images of microstructures and their respective strain fields represented as two-dimensional arrays. This data is utilized for training a convolutional neural network to predict strain fields within a microstructure, through image colorization algorithm. This dataset contains six sub-folders each having two datasets (500 samples and 50 samples) of microstructures with porosity defects of six unique shapes described in the aforementioned research article along with their strain fields.
DOI: 10.17632/wttpypkctg
title: Resting State EEG Biomarkers of Cognitive Decline (PLOS ONE - INSPECDS)

description: Supporting data for the manuscript titled: Resting State EEG Biomarkers of Cognitive Decline Associated with Alzheimer’s Disease and Mild Cognitive Impairment
DOI: 10.6084/m9.figshare.13553594.v1
title: Pathogenicity assessment of Germline Variants

description: Dataset to reproduce results shown in paper Nicora, G., Zucca, S., Limongelli, I. <i>et al.</i> A machine learning approach based on ACMG/AMP guidelines for genomic variant classification and prioritization. <i>Sci Rep</i> 12, 2517 (2022). https://doi.org/10.1038/s41598-022-06547-3.Variants associated with a broad set of mendelian diseases are collected from the CLINVITAE public dataset (http://clinvitae.invitae.com) and they are annotated according to the ACMG/AMP guidelines through the eVai software (https://www.engenome.com).Variants associated with hereditary cancer (reported as pathogenic in the ICR639 study) are also annotated and uploaded. Code: https://github.com/GiovannaNicora/MLVar<br><br>
DOI: 10.6084/m9.figshare.21365409.v1
title: Smart Device Interest, Perceived Usefulness, and Preferences in Rural Alabama Seniors

description: Survey Seniors in Rural Alabama on their Interest in Smart Home devicesQ3-Q7 - Percevied usefulness and ease of use for smart lightsQ9-Q13-Percevied usefulness and ease of use for A/C or heatersQ15-Q18-Percevied usefulness and ease of use for smart electricutyy monitoringQ20-Q24-Percevied usefulness and ease of use for smart locksQ25-Q31 - Interaction via screens, voice, robots or conventional mechanismsQ32-Technilogical ReadinessQ33-Technology ownershipQ34-Technology experiencesQ35-BFI Personality InventoryQ36-39-Demographic Information
DOI: 10.6084/m9.figshare.25472467.v1
title: EPI-Clone dataset: Mature cell experiment

description: This is the dataset supporting the EPI-Clone manuscript: Targeted single cell methylation profiling of hematopoietic stem and progenitor cells (HSPCs) and mature myeloid cells from blood, bone marrow, and lung was performed with the scTAMseq method. Two experiments are included: Mature myeloid cells from lung tissue and HSPCs and mature myeloid cells from blood and bone marrow. Dataset is a seurat (v4) object with the following assays, reductions and metadata:  <br><b>ASSAYS</b>: AB: Antibody expression data DNAm: DNA methylation data, containing binary observations (0: amplicon not observed, i.e. dropout or absence of DNA methylation, 1: amplicon observed, i.e. DNA methylation). See the paper on scTAMseq <b>DIMENSIONALITY REDUCTION</b><b> </b>pca: PCA performed on the DNAm data umap: UMAP computed on the DNAm data <b>METADATA</b> Sample: The experiment that the cell is from, values are "Lung" for cells obtained from lung and “MyeLym” for HSPCs/mature myeloid cells from bone marrow and blood CellType: Cell type annotation LARRY: Error corrected LARRY barcode Pseudotime: Differentiation pseudotime PerformanceNonHhaI: Performance of the control amplicons in that cell TotalCounts: Number of reads on the Non-HhaI control amplicons
DOI: 10.6084/m9.figshare.5129434.v1
title: Supplementary Material for: Incidentally Raised Cardiac Troponin I Has a Worse Prognosis in Older Patients Compared to Those with Normal Cardiac Troponin I and Patients with Acute Coronary Syndrome: A Cohort Study

description: <b><i>Background:</i></b> Incidentally elevated cardiac troponin I (cTnI) levels are common in acutely unwell older patients. However, little is known about how this impacts on the prognosis of these patients. <b><i>Objective:</i></b> We aimed to investigate whether incidentally elevated cTnI levels (group 1) are associated with poorer outcome when compared to age- and sex-matched patients without an elevated cTnI level (group 2), and to patients diagnosed with acute coronary syndrome (group 3). <b><i>Patients and Methods:</i></b> This prospective, matched cohort study placed patients ≥75 years old who were admitted to a University teaching hospital into groups 1-3, based on the cTnI levels and underlying diagnosis. Outcomes were compared between the groups using mixed-effects regression models and adjusted for renal function and C-reactive protein. All-cause mortality at discharge, at 1 month and 3 months, alongside the length of hospital stay (LOS), were recorded. <b><i>Results:</i></b> In total, 315 patients were included, with 105 patients in each of the 3 groups. The mean age was 84.8 ± 5.5 years, with 41.9% males. All patients were followed up for 3 months. The percent all-cause mortality at discharge and the LOS for groups 1, 2 and 3 were 12.4, 3.8 and 8.6% and 11.2, 8.5 and 7.7 days, respectively. Group 1 had significantly increased mortality at 3 months [odds ratio (OR) 2.80, 95% confidence interval (CI) 1.12-6.96; p = 0.040] and LOS (OR 1.39, 95% CI 1.08-1.79; p = 0.008) compared to group 2 and did not differ significantly when compared to 3-month mortality (OR 2.39, 95% CI 0.91-6.29; p = 0.079) or LOS (OR 1.26, 95% CI 0.96-1.66; p = 0.097) in group 3. <b><i>Conclusion:</i></b> There is a significant association between an incidental rise in cTnI level with mortality and LOS in older patients. Further research is required to evaluate whether a more systematic management of these patients would improve the prognosis.
DOI: 10.6084/m9.figshare.7110842.v1
title: Electronic Supplementary Material - Data from A temporal shift in trophic diversity among a predator assemblage in a warming Arctic

description: Yurkowski-SupportingData-ESM
DOI: 10.6084/m9.figshare.8138273.v1
title: Metatranscriptome TPM normalized gene abundances

description: This datafile contains TPM normalized values for ORFs in the co-assembly for each of the metatranscriptomic samples from 2012-2014 at the Linnaeus Microbial Observatory site.
DOI: 10.17632/jtf7tjsdpr
title: Investigation on Dilute Solution Viscosity Behavior of Alkyd Resin Solutions

description: Data set for Investigation on Dilute Solution Viscosity Behavior of Alkyd Resin Solutions in three different organic solvents at different temperatures.
This study investigated the solution viscosities of soybean oil-modified alkyd resin in the organic solvents: benzene, toluene, and xylene at 45, 55, and 65ᴼC. Viscosity measurements were conducted using a Canon-Fenske viscometer, size 50. The reduced viscosities of alkyd solutions in benzene exhibited a general increase with solution concentrations at C = 0.40 to 1.0 g/dl at all temperatures investigated. Similar observations in reduced viscosity at 45ᴼC were noted in xylene at C = 0.4 to 0.80 g/dl. The highest reduced viscosities were consistently observed in benzene, irrespective of solution concentrations and temperatures. Negative reduced viscosity values which decreased with increasing solution concentrations were observed for alkyd solutions in toluene (C &lt; 1.0 g/dl), and xylene (C &lt; 1.0 g/dl) at 55, and 65ᴼC. Benzene exhibited the highest intrinsic viscosity values [ɳ] for alkyd solutions at the temperatures studied while toluene was the least. Thus, the thinning of alkyd paints with benzene is suggested for optimal paint flow where positive solvent-polymer interaction is anticipated.
DOI: 10.17632/skr3snz3ry
title: The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization

description: Original uncropped northern blot images for: The RNA landscape of the human commensal Segatella copri reveals a small RNA essential for gut colonization.
DOI: 10.5061/dryad.mk63jb7
title: Data from: Distribution and clinical associations of integrating conjugative elements and cag pathogenicity islands of Helicobacter pylori in Indonesia

description: The clinical associations and correlations with other virulence factors such as cag pathogenicity island (PAI) of the Integrating Conjugative Elements Helicobacter pylori TFSS (ICEHptfs), a new type IV secretion system (TFSS) in H. pylori has not been described. Among 103 studied strains from Indonesia, almost all strains (99.0%) contained cag PAI with more than half (55.8%) were intact cag PAI. Patients infected with intact cag PAI strains showed significantly higher antral activity, inflammation and atrophy as well as corporal inflammation than those with non-intact cag PAI strains, confirming the virulence of cag PAI. Over half of strains (53.8%) contained ICEHptfs, predominantly consisted of ICEHptfs3-tfs4a (42.8%) and ICEHptfs3 (16.3%). Although patients infected with ICEHptfs-positive strains had lower H. pylori density, those with the complete ICEHptfs4b strains tended to have higher antral activity than the negative one. In combination, patients infected with combination of intact cag PAI-ICEHptfs-positive strains had more severe inflammation than those with non-intact cag PAI-ICEHptfs-negative, suggesting a possibility of a mutual correlation between these TFSS(s).
description: ICEHptfs_Alignment_IndonesiaICEHptfs.zip
DOI: 10.6084/m9.figshare.25573647.v1
title: <i>Oecanthus rufescens</i>_genome.fasta

description: The completion of the high-quality chromosomal-level whole-genome assembly of <i>Oecanthus rufescens</i> marks the establishment of the first reference genome within the Oecanthidae, order Orthoptera. This achievement not only provides essential resources for an in-depth understanding of the evolutionary processes of genome size but also holds significant scientific value for elucidating the phylogenetic relationships among orthopteran insects.
DOI: 10.6084/m9.figshare.26984026.v1
title: TA - thin films

description: Mat files with EMG signals recorded from the tibialis anterior with one grid of 64 surface electrodes per muscle and edited motor unit pulse trains.
DOI: 10.6084/m9.figshare.27193869.v1
title: BRCA .zip

description: This folder contains the CCK8 functional trial for BRCR (Breast cancer) and the transwell trial in Figure7.Click on the BRCA cck8 folder, which contains the experimental data of DAY0-DAY4 for 5 days respectively. A Summary table named Summary diagram of DAY0-DAY4. A statistical analysis diagram uploaded in PNG format after processing by graphpad prism software was named Summary diagram of DAY0-DAY4 calculation diagram. A copy of cck8 results in pdf format.Click on the BRCA transwell folder and there are two folders named invation and migration respectively. For invation folder, there are three folders named NC,si HKDC1-1 and si HKDC1-2. Among these three folders, Corresponding to negative control, the first sequence of HKDC1 gene and the second sequence of HKDC1 gene are lowered, and the corresponding number of cells passing through the transwell chamber is clicked in these three folders. And upload a Count summary chart, named Count summary chart excell table, and upload the statistical analysis chart in PNG format after processing by graphpad prism software. Call it Count and summarize the results. Similarly, the migration folder is consistent with the above.Finally, according to the requirements of the editor, the content is changed to English format.
DOI: 10.6084/m9.figshare.28854347.v1
title: Supplementary Material for: Sustained clinical response to Olaparib in a patient with metastatic pancreatic cancer and somatic ATM-Mutation R2034Ter: a case report

description: Background
Pancreatic cancer remains a lethal disease with limited therapeutic options. The field of targeted therapies is still growing. Treatment with PARP inhibitors has been successfully described mainly in patients with germline mutation in in BRCA1/2. The efficacy of PARP inhibitors in patients with alterations in other genes in the homologous repair pathway is under discussion. 
Case Presentation
A 77-year-old male patient with metastatic pancreatic ductal adenocarcinoma (PDAC) was initially treated with 5-fluoruracil, oxaliplatin and irinotecan, followed by 5-floururacil and irinotecan over the course of one year, leading to sustained partial remission. Molecular genetic analysis of the tumor revealed an inactivating R2034Ter mutation in the Ataxia telangiectasia serine/threonine kinase gene (ATM), being part of a homologous DNA damage repair pathway eventually involving BRCA1 and BRCA2. After discussion in the Molecular Tumor Board (MTB), the patient was started on off-label Olaparib maintenance therapy, under which he has shown stable disease over a period of eighteen months. After developing one new liver metastasis at 21 months on Olaparib, he received conventional therapy with Gemcitabine/Cisplatin to which he responded.
Conclusion
This is the first case of a R2034Ter ATM mutant PDAC with sustained clinical response under Olaparib maintenance therapy reported. In select cases, ATM, a member of the BRCA pathway, might be a druggable target in pancreatic cancer.
DOI: 10.6084/m9.figshare.11956239.v1
title: Daily meteorological data from the Radcliffe Observatory (now Radcliffe Meteorological Station), from January 1815: updated to January 2020

description: Daily dataset of temperature, rainfall and sunshine records from the Radcliffe Observatory site in Oxford, England. Variable commencement date of record by element - daily air temperatures from 1815, rainfall from 1828 and sunshine from 1921. Daily data have not yet been fully digitised for some elements (sunshine records, for example, began in Feb 1880 but have only been digitised back to Jan 1921 at present).<br>Brief documentation is available in a short README txt file in this location.<br>Data updated to JANUARY 2020; it is intended to be updated annually.<br>If you use these datasets in publications, please cite the source as:<br>Oxford Weather and Climate since 1767 by Stephen Burt and Tim Burt, published by Oxford University Press, 2019.<br>Please let us know &lt; email to rms@ouce.ox.ac.uk &gt; should you find any errors in these datasets.
DOI: 10.6084/m9.figshare.25952182.v1
title: Qualitative Data Analysis FINAL

description: Data gathered through survey questionnaire; participants: STEM Educators.
DOI: 10.6084/m9.figshare.29046089.v1
title: Visual alignments from the Adnataria and Exsertaria datasets

description: These are some alignments from my Chapter 3 dataset for visual inspection
DOI: 10.6084/m9.figshare.29054654.v2
title: Green Aid, Green Trade

description: <b>The "</b><b>Green </b><b>Aid, </b><b>Green </b><b>Trade" </b><b>zip </b><b>file </b><b>includes:</b><b>Exporter </b><b>Model.</b><b>dta</b>: This file contains a bilateral panel dataset from 2002 to 2025, covering country-pair total exports, green exports, and dirty exports. It includes data on total aid received by recipient countries, preferential trade agreements, institutional quality, standard gravity variables, Freedom House indices, and environmental taxation. This is the main dataset used to generate the results for the exporter model presented in the paper.<b>Dynamic </b><b>Model.</b><b>dta</b>: This file contains a rectangularized dataset of all possible donor-recipient pairs, designed to address potential selection bias. It includes most of the variables present in the "Exporter Model.dta" but also adds information on total official development assistance (ODA) and the share of green party representation in national parliaments.<br>
DOI: 10.17632/gktc5y2sy2
title: Textbook Dataset from NCTB

description: In our quest to advance Bangla language processing, we have created a specialized dataset tailored to our project's objectives. This dataset is a cornerstone in developing an effective Bangla Question-Answering system with a strong emphasis on customization. It comprises approximately 3,000 meticulously curated question-and-answer pairs. Human annotators, guided by NCTB textbooks from classes six to ten, painstakingly selected these pairs. Each passage in the dataset, averaging 387 words, offers rich context for meaningful question answering. Human annotators also diligently collected responses for various question types, ensuring the dataset's reliability and relevance in Bangla. Our primary goal is to develop a proficient Bangla question-answering system. We have organized the dataset into training and validation subsets to achieve this, conveniently encapsulated within CSV files. These files seamlessly integrate multiple passages with corresponding questions and expertly annotated answers. Our dataset forms the foundation for a precision-driven, context-aware Bangla question-answering system. It serves as a vital resource for researchers and developers working to enhance Bangla language processing capabilities, poised to advance the state of the art in this field.
DOI: 10.6084/m9.figshare.22335247.v1
title: Commensal microbiota regulate renal gene expression in a sex-specific manner

description: Supplemental Table 4
DOI: 10.6084/m9.figshare.28429883.v1
title: GATA3-PROSTATE FIGSHARE.xlsx

description: Immunohistochemical expression of GATA3 in prostate cancer
DOI: 10.17632/23ptzx2df4
title: Partners' preferences DCE

description: This is a repplication file with the data and codes to repplicate the work by Boto-García and Mariel (2024) entitled "How well do couples know their partners' preferences? Experimental evidence from joint recreation"
DOI: 10.6084/m9.figshare.16988029.v2
title: Global patterns and drivers of phosphorus pools in natural soils version 2.0

description: These items are database, predicted maps, metadata, and R code for the manuscript global patterns and drivers of phosphorus pools in natural soils.
DOI: 10.6084/m9.figshare.19802125.v2
title: Bioelectrical impedance vector analysis in Malawi – Anonymised analysis data

description: Anonymous analysis dataset used for Dunning et al, "Bioelectrical impedance vector analysis as an indicator of malnutrition in children under-five years with and without pneumonia in Mchinji District Malawi – An exploratory mixed-methods analysis"
DOI: 10.6084/m9.figshare.29119205.v2
title: DrugGEN: Target Specific De Novo Design of Drug Candidate Molecules with Graph Transformer-based Generative Adversarial Networks

description: Discovering novel drug candidate molecules is one of the most fundamental and critical steps in drug development. Generative deep learning models, which create synthetic data given a probability distribution, offer a high potential for designing de novo molecules. However, for them to be useful in real-life drug development pipelines, these models should be able to design drug-like and target-centric molecules. In this study, we propose an end-to-end generative system, DrugGEN, for the de novo design of drug candidate molecules that interact with intended target proteins. The proposed method represents molecules as graphs and processes them via a generative adversarial network comprising graph transformer layers. The system is trained using a large dataset of drug-like compounds and target-specific bioactive molecules to design effective inhibitory molecules against the AKT1 protein, which is critically important in developing treatments for various types of cancer. We conducted molecular docking and dynamics, to assess the target-centric generation performance of the model, as well as attention score visualisation to examine model interpretability. In parallel, selected compounds were chemically synthesized and evaluated in the context of in vitro enzymatic assays, which identified two bioactive molecules that inhibited AKT1 at low micromolar concentrations. These results indicate that DrugGEN's de novo molecules have a high potential for interacting with the AKT1 protein at the level of its native ligands. Using the open-access DrugGEN codebase, it is possible to easily train models for other druggable proteins, given a dataset of experimentally known bioactive molecules.
DOI: 10.6084/m9.figshare.5426458.v1
title: Genome - Abeoforma whisleri​

description: Genome assembly and annotation of Abeoforma whisleri:<br>- XXXX_gDNA.fasta: "Genome assembly (fasta format)" <br>- XXXX_long.annot.gff: "Gene annotation (GFF)"<br>- XXXX_long.cds.fasta: "Predicted transcripts (CDS only, fasta format)"<br>- XXXX_long.pep.fasta: "Predicted peptides (fasta format)"<br>If you use this data, please cite: Dynamics of genomic innovation in the unicellular ancestry of animals, Grau-Bové <i>et al., </i>eLife 2017 <br>WARNING: highly fragmented genome assembly. See ​​​paper for further details.<br><br>www.multicellgenome.com