cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bnae7d
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Astragalus crypticus I.M.Johnst.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017216-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dm4du6
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 0,180 0,180 90,-180 90,-180 0))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OrganismQuantity 1.0-100000.0",
 "SamplingProtocol is one of (VES (Encuentro Visual), VES (Visual Encounter Survey), Parcela, Transect, Busqueda activa, Cuadrante, Auditivo y Visual)",
 "TaxonKey is Anura"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017218-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9rqjz
title: Occurrence Download

description: A dataset containing 125418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry MULTIPOLYGON(((91.59561 26.14048,91.59492 26.12754,91.59015 26.11559,91.58211 26.11352,91.58016 26.10909,91.57515 26.10388,91.57345 26.09744,91.57406 26.09258,91.58339 26.08978,91.58943 26.09,91.58834 26.08487,91.59175 26.0797,91.60528 26.08765,91.61235 26.08892,91.61934 26.09459,91.62365 26.09516,91.62889 26.10249,91.63114 26.10329,91.63226 26.10103,91.63347 26.10754,91.63586 26.10673,91.64065 26.10865,91.64595 26.10729,91.64621 26.11083,91.65579 26.11337,91.65925 26.11651,91.66373 26.11612,91.66193 26.11266,91.66446 26.10993,91.67459 26.11039,91.67787 26.10736,91.68285 26.1076,91.68385 26.10531,91.68774 26.10381,91.69567 26.10501,91.70237 26.10974,91.71215 26.11089,91.71462 26.10964,91.71326 26.10842,91.71238 26.09453,91.7177 26.09296,91.71932 26.094,91.72031 26.10482,91.73261 26.10452,91.73385 26.10098,91.73941 26.10753,91.75273 26.10806,91.75302 26.10611,91.75012 26.10281,91.75049 26.09882,91.76781 26.10247,91.76966 26.10133,91.77195 26.10376,91.78064 26.10746,91.7965 26.10658,91.7949 26.09773,91.78721 26.09665,91.77943 26.09217,91.78346 26.0908,91.78685 26.08495,91.79059 26.08529,91.80302 26.09755,91.80553 26.09734,91.80503 26.09332,91.81131 26.0969,91.81868 26.10835,91.82493 26.11209,91.83092 26.11857,91.83574 26.11854,91.8473 26.10995,91.85566 26.10901,91.85914 26.12651,91.85642 26.13407,91.85742 26.1585,91.86237 26.16687,91.86604 26.18176,91.86631 26.19474,91.86132 26.20138,91.86151 26.21609,91.84533 26.21521,91.82263 26.20771,91.79497 26.20526,91.78538 26.20075,91.77256 26.19755,91.7714 26.19941,91.75789 26.20308,91.75253 26.20727,91.75282 26.20862,91.74483 26.2098,91.74204 26.21523,91.7307 26.22361,91.72724 26.22257,91.72259 26.22422,91.7015 26.2197,91.70047 26.21693,91.69058 26.20826,91.68678 26.21041,91.68747 26.21481,91.68133 26.21158,91.68018 26.2072,91.67318 26.20051,91.67536 26.19657,91.66871 26.19279,91.66541 26.19264,91.66568 26.19065,91.64782 26.18894,91.64544 26.19106,91.63842 26.19034,91.65565 26.18327,91.65632 26.17971,91.6501 26.163,91.63674 26.14878,91.60818 26.1411,91.59561 26.14048)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2018-2023"
 ]
}

 The dataset includes 125418 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017200-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5t4ux
title: Occurrence Download

description: A dataset containing 7898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Eurema mexicana (Boisduval, 1836)"
 ]
}

 The dataset includes 7898 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017219-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u87fwq
title: Occurrence Download

description: A dataset containing 442565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "TaxonKey is Acer platanoides L."
 ]
}

 The dataset includes 442565 records from 1699 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017143-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7u8xgs
title: Occurrence Download

description: A dataset containing 27699 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Bubo bubo (Linnaeus, 1758)"
 ]
}

 The dataset includes 27699 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240748-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhhmda
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hibiscus ×hongjinma Y.T.Chang"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242448-230224095556074/datasets/export for details.
DOI: 10.15468/dl.fuzsrr
title: Occurrence Download

description: A dataset listing the 66 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Aves de la expedición en el páramo de Bijagual, Boyacá - Proyecto Boyacá BIO"
 ]
}

 The dataset's 66 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003368-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkgyvf
title: Occurrence Download

description: A dataset containing 253342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tripleurospermum inodorum (L.) Sch.-Bip"
 ]
}

 The dataset includes 253342 records from 1312 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010690-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbcjeu
title: Occurrence Download

description: A dataset containing 8197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is FRA",
 "Geometry POLYGON((-12.13003 39.26178,33.42106 39.26178,33.42106 57.48222,-12.13003 57.48222,-12.13003 39.26178))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "Year 1980-2023"
 ]
}

 The dataset includes 8197 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0243002-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t63nnr
title: Occurrence Download

description: A dataset containing 17941 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Saurauia Willd."
 ]
}

 The dataset includes 17941 records from 203 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240764-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605996_d5
title: Additional file 1: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a FASTA file with the raw sequences for unmapped genes. (FA 277 kb)
DOI: 10.6084/m9.figshare.c.3605978_d10
title: Additional file 11: Table S6. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: List of DE detoxification unigenes over-expressed in the three resistant strains. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3605996_d6
title: Additional file 2: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a GFF3 file with the complete annotation of all genes in the AaegL.RU geneset. (GFF3 90.8 mb)
DOI: 10.6084/m9.figshare.c.3605978_d11
title: Additional file 8: Table S4. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: Differentially expressed unigenes (LogFC &gt; 1, FDR
DOI: 10.6084/m9.figshare.c.3605978_d13
title: Additional file 4: Table S3. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: Summary of KEGG pathway mapping of B. tabaci contigs. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3605996_d7
title: Additional file 4: of The neurotranscriptome of the Aedes aegypti mosquito

description: Describes the mapping and read count statistics for each individual RNA-seq library. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3605996_d8
title: Additional file 9: of The neurotranscriptome of the Aedes aegypti mosquito

description: Is a spreadsheet containing the DESeq2 differential expression statistics of transcripts regulated by blood-feeding state for all applicable tissues. (XLSX 1852 kb)
DOI: 10.6084/m9.figshare.c.3605978_d14
title: Additional file 12: Table S7. of Transcription analysis of neonicotinoid resistance in Mediterranean (MED) populations of B. tabaci reveal novel cytochrome P450s, but no nAChR mutations associated with the phenotype

description: List of contigs encoding P450 genes in the B. tabaci transcriptome. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3605966_d15
title: Additional file 5: of Cultivation of stable, reproducible microbial communities from different fecal donors using minibioreactor arrays (MBRAs)

description: Relative abundance of all MBRA core OTUs across stable reactors (days 8–21; mean ± SD). Table providing the mean relative abundance of OTUs present in the core communities of MBRAs of all different fecal types examined.
DOI: 10.6084/m9.figshare.c.3606032_d3
title: Additional file 13: Table S9. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Comparison of polarized gene expression in regeneration between Nematostella and Planaria. The anterior and posterior enriched genes of Planaria are listed with their oral or aboral Nematostella orthologs and homologs when present. The color coding is the same as in Fig.Â 7. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3606032_d4
title: Additional file 6: Figure S3. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Time course graphs of metalloproteinase (MP) group genes and inhibitors. The FDR-adjusted p-values for the time effect (DESeq GLMs) for all genes are given. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3606038_d1
title: Additional file 4 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: NanoString probe sequences. Table S4. NanoSNanoStringtring probe sequences. (XLSX 42.1 kb)
DOI: 10.6084/m9.figshare.28013204
title: Pkl_files

description: The cellular components and defense mechanisms of innate immunity have diversified alongside the evolution from invertebrates to vertebrates to adapt to a rapidly changing environment. It remains unclear how immune functions and corresponding molecules are conserved or have diverged during evolution. Here, we generated invertebrate hemolymph and vertebrate blood single cell transcriptome landscapes across six species at different taxonomic nodes and combined them with public data to construct a comprehensive cross-species cellular hierarchy. We defined distinctive phagocytic-like cells (PLCs) within various invertebrates that share homologous transcriptional programs with vertebrate myeloid cells. Through cross-species comparisons, we identified a variety of functional molecules and transcription factors shared by phagocytic cells in invertebrates and myeloid cells in vertebrates, which are the core regulatory programs for the inheritance of phagocytic capabilities. Remarkably, we combined the latest Stereo-Cell technology to define specific hemocyte subtypes in invertebrates as potential ancestors of thrombocytes through the expression of coagulation-related factors in clots. Our study elucidates the ancient and conserved aspects of phagocytosis in immune system evolution and provides the first specific definition for the origin of thrombocytes.
DOI: 10.6084/m9.figshare.28013204.v2
title: Pkl_files

description: The cellular components and defense mechanisms of innate immunity have diversified alongside the evolution from invertebrates to vertebrates to adapt to a rapidly changing environment. It remains unclear how immune functions and corresponding molecules are conserved or have diverged during evolution. Here, we generated invertebrate hemolymph and vertebrate blood single cell transcriptome landscapes across six species at different taxonomic nodes and combined them with public data to construct a comprehensive cross-species cellular hierarchy. We defined distinctive phagocytic-like cells (PLCs) within various invertebrates that share homologous transcriptional programs with vertebrate myeloid cells. Through cross-species comparisons, we identified a variety of functional molecules and transcription factors shared by phagocytic cells in invertebrates and myeloid cells in vertebrates, which are the core regulatory programs for the inheritance of phagocytic capabilities. Remarkably, we combined the latest Stereo-Cell technology to define specific hemocyte subtypes in invertebrates as potential ancestors of thrombocytes through the expression of coagulation-related factors in clots. Our study elucidates the ancient and conserved aspects of phagocytosis in immune system evolution and provides the first specific definition for the origin of thrombocytes.
DOI: 10.6084/m9.figshare.c.3606032_d5
title: Additional file 3: Table S2. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: DE genes and their CCC. List of all DE genes and their time effect FDR adjusted p-value and CCC. In addition, the side of higher expression in most of the time points and the side and hour of the highest level of change in expression per gene are given. The cluster the gene belongs to (from Fig.Â 2c and Additional file 2: Figure S1) is also indicated, as is whether the gene is consistently expressed throughout regeneration (Fig.Â 3a) (XLSX 524Â kb)
DOI: 10.6084/m9.figshare.28013204.v1
title: Pkl_file

description: The cellular components and defense mechanisms of innate immunity have diversified alongside the evolution from invertebrates to vertebrates to adapt to a rapidly changing environment. It remains unclear how immune functions and corresponding molecules are conserved or have diverged during evolution. Here, we generated invertebrate hemolymph and vertebrate blood single cell transcriptome landscapes across six species at different taxonomic nodes and combined them with public data to construct a comprehensive cross-species cellular hierarchy. We defined distinctive phagocytic-like cells (PLCs) within various invertebrates that share homologous transcriptional programs with vertebrate myeloid cells. Through cross-species comparisons, we identified a variety of functional molecules and transcription factors shared by phagocytic cells in invertebrates and myeloid cells in vertebrates, which are the core regulatory programs for the inheritance of phagocytic capabilities. Remarkably, we combined the latest Stereo-Cell technology to define specific hemocyte subtypes in invertebrates as potential ancestors of thrombocytes through the expression of coagulation-related factors in clots. Our study elucidates the ancient and conserved aspects of phagocytosis in immune system evolution and provides the first specific definition for the origin of thrombocytes.
DOI: 10.6084/m9.figshare.c.3606032_d6
title: Additional file 5: Table S4. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: Metalloproteinase (MP) groups and inhibitors. A list of the major DE MPs identified in the screen with ADAMTS, Astacins, other MPs and their inhibitors. (XLSX 676Â kb)
DOI: 10.6084/m9.figshare.c.3606044_d1
title: MOESM1 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 1. Primary data of bacterial adhesion to Plg and BSA (Fig. 1).
DOI: 10.6084/m9.figshare.c.3606038_d3
title: Additional file 3 of Molecular characterization of Gleason patterns 3 and 4 prostate cancer using reverse Warburg effect-associated genes

description: MTE primer sequences. Table S3. MTE primer sequences. (XLSX 45.9 kb)
DOI: 10.6084/m9.figshare.c.3606032_d7
title: Additional file 10: Table S7. of A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis

description: DE genes of different developmental pathways. A list of DE genes of major the developmental pathways that were manually detected (see Methods) and have a CCCâ
DOI: 10.6084/m9.figshare.c.3606044_d2
title: MOESM4 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 4. Primary data of Plg activation by recombinant proteins (Fig. 5).
DOI: 10.6084/m9.figshare.c.3606044_d3
title: MOESM2 of Penicillin binding protein 3 of Staphylococcus aureus NCTC 8325-4 binds and activates human plasminogen

description: Additional file 2. Primary data of plasminogen binding by FTP library clones (Fig. 2).
DOI: 10.15468/dl.dtk8dr
title: Occurrence Download

description: A dataset containing 360 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Moniliophthora roreri (Cif.) H.C.Evans, Stalpers, Samson & Benny"
 ]
}

 The dataset includes 360 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032701-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606146_d2
title: Additional file 1: Table S1. of Identification by the DArTseq method of the genetic origin of the Coffea canephora cultivated in Vietnam and Mexico

description: List of plants evaluated with DarTseq markers. Table S2. List of DArTseq markers and used in the analysis. Table S3. Structural SNPs contributing to the population structure in C. canephora. Table S4. Putative outlier marker loci identified by the Fst outlier method implemented in Lositan. (XLSX 457Â kb)
DOI: 10.6084/m9.figshare.c.3606161_d1
title: Additional file 2: of Determinants of stillbirths in Ghana: does quality of antenatal care matter?

description: Distribution of individual components of the ANC quality measure, GMHS (XLSX 9 kb)
DOI: 10.15468/dl.2zg55e
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leontopodium leiolepis Nakai"
 ]
}

 The dataset includes 36 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032702-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606161_d2
title: Additional file 1: of Determinants of stillbirths in Ghana: does quality of antenatal care matter?

description: Distribution of variables for full sample, GMHS (XLSX 50 kb)
DOI: 10.15468/dl.dswh27
title: Occurrence Download

description: A dataset containing 929 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petasites rubellus (J.F.Gmel.) J.Toman"
 ]
}

 The dataset includes 929 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032703-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606191_d2
title: Additional file 2: of Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

description: This file contains the rule-based models for all the proteins of both subtypes. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3606197_d1
title: MOESM1 of Three new species of Begonia endemic to the Puerto Princesa Subterranean River National Park, Palawan

description: Additional file 1. Voucher specimen details and genbank accession numbers for the DNA sequences used in the phylogenetic analysis.
DOI: 10.6084/m9.figshare.c.3606191_d3
title: Additional file 3: of Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

description: This file contains list of names of the unseen viral sequences for both subtypes that were either miss-classified or could not be classified by the rule-based models. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3606191_d4
title: Additional file 4: of Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

description: This file contains singular and combinatorial signatures from the rules for both subtypes. (XLSX 63 kb)
DOI: 10.6084/m9.figshare.c.3606191_d5
title: Additional file 1: of Identification of combinatorial host-specific signatures with a potential to affect host adaptation in influenza A H1N1 and H3N2 subtypes

description: This file contains the lists of significant features that were selected by MCFS for all the proteins of both subtypes. (XLSX 74 kb)
DOI: 10.15468/dl.qe5zhb
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saussurea tomentosa Kom."
 ]
}

 The dataset includes 239 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032705-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3606248_d3
title: Additional file 1: of Genomic analysis of mouse VL30 retrotransposons

description: Genomic coordinates and structural features of full-length, truncated and solo-LTR VL30 sequences. The structural features of each individual full-length element after LTR-finder analysis are shown using the genome version mm10. The presence of PSF-binding motifs, with the percentage (%) similarity for each motif to consensus sequence is also shown for full-length and truncated elements. (XLS 79Â kb)