cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14265212.v1
title: agri-BusinessContinuity Template Data for MultiHazard Risk Assessment in the Dairy and Cattle Feed Yards Sectors

description: The dataset is composed of 56 records regarding business continuity data for key business functions (KBFs) in the Dairy Cattle as well as the Cattle FeedYards Industries. The data have been collected from the PRPC Texas (The Panhandle Regional Planning Commission). The dataset includes hazard types, hazard causes and hazard effects for groups of key business functions and are used as input for computing risk magnitude and additional recovery time required for interrupted KBFs when the hazards affect the given KBF group.
DOI: 10.6084/m9.figshare.15022203.v1
title: Arion.Genes.gff

description: gene annotation file of Arion vulgaris genome
DOI: 10.6084/m9.figshare.17143874.v1
title: Data File 1.csv

description: This data file is for “RMS vs Field” diagrams of the original tube lens systems and the software-produced tube lens systems for Systems Ⅰ to Ⅴ as indicated in the paper.
DOI: 10.6084/m9.figshare.26272012.v1
title: Supplementary data used for "Prey and prejudice: European bee-eaters (<i>Merops apiaster</i>) have species-specific effects on the ecology and genetics of bumble bees"

description: Supplementary data used for "Prey and prejudice: European bee-eaters (<i>Merops apiaster</i>) have species-specific effects on the ecology and genetics of bumble bees"
DOI: 10.6084/m9.figshare.12966998.v1
title: Supplementary Material for: Dermatological Disease in Australian Heart and Lung Transplant Recipients

description: <b><i>Background:</i></b> Research examining skin disease in heart and lung transplant recipients in Australia is limited. This study aims to determine the spectrum of skin diseases encountered in Australian heart and lung transplant recipients, their effect on quality of life, and potential risk factors for skin cancer. <b><i>Methods:</i></b> Ninety-four participants were recruited from an Australian heart and lung transplant centre between March and December 2016. The participants were asked to fill out a questionnaire which included the Dermatology Life Quality Index and were examined for malignant and non-malignant skin disease. The association of study variables with the presence of skin cancer and Dermatology Life Quality Index score were examined using logistic regression analysis. <b><i>Results:</i></b> A dermatological diagnosis was made in 82 patients (87%). Actinic keratosis was the most common diagnosis, affecting 50 participants (53%), followed by skin cancer (41; 44%) and warts (14; 15%). Other non-malignant skin diseases were less common. Risk factors associated with skin cancer on multivariate modelling included age at transplantation and a history of ≥5 post-transplant skin cancers. Skin disease had a negative effect on the quality of life of a minority of patients. <b><i>Conclusion:</i></b> Actinic keratosis and skin cancer are very frequent in Australian heart and lung transplant recipients and more common than non-malignant skin diseases. Routine dermatological surveillance at regular intervals is advised.
DOI: 10.6084/m9.figshare.28006841.v1
title: Rawdata.xlsx

description: Photobiomodulation therapy
DOI: 10.6084/m9.figshare.3427637.v1
title: ilsvrc-2012-batches

description: A few of the test batches for the ILSVRC-2012 dataset. The full dataset is available here for free: http://www.image-net.org/download-images. I have included these batches here for easy testing of my models without full registration.
DOI: 10.6084/m9.figshare.13735537.v2
title: Protein-centric rate of sequence evolution according to Rate4Site on orthogroups of 14 fungal species

description: Overall, 25 descriptors (features) are calculated for 3797 unique proteins.The legend for each descriptor is given in the associated header file.<br><br>Columns 1-5 provide protein identifiers:<br>- ORF, <br>- SGD Gene Name, <br>- UniprotKB, <br>- Matching PDB structure?<br>- PDB code of closest structure<br><br>Columns 6-8 correspond to protein expression:<br>- Integrated abundance in ppm,<br>- log10 abundance,<br>- bins of abundance (5 bins)<br><br>Columns 9-16 contain evolutionary rates averaged over:<br>- Full sequence<br>- Disordered residues<br>- Not Disordered residues<br>- Domain residues<br>- Not Domain residues<br>- Residues with PDB coordinates<br>- Surface residues (&gt;25% relative ASA)<br>- Buried residues (&lt;25% relative ASA)<br><br>Column 17 indicates whether both domains and disordered regions coexist (at least 20 residues for each)<br><br>Column 18-25 give the number of residues within each region considered for the average of evolutionary rates in column 9-16.<br><br><br>
DOI: 10.6084/m9.figshare.22776701.v5
title: Reproducible Workflow Datapack for Veseli et al. 2023.

description: Datapack for the reproducible workflow associated with the study by Veseli et al. titled "Microbes with higher metabolic independence are enriched in human gut microbiomes under stress" (https://doi.org/10.7554/eLife.89862.1). See https://merenlab.org/data/ibd-gut-metabolism/.
DOI: 10.6084/m9.figshare.23786520.v3
title: Supplemental files from Endogenous glucose production in patients with glycogen storage disease type Ia estimated by oral D [6,6-2H2]-glucose

description: Supplemental file 1. <strong>Calculated </strong><em><strong>M</strong></em><sub><em><strong>2</strong></em></sub><strong> curve in study participants during glucose-SIB test 1 (blue), glucose-SIB test 2 (red) and glucose-SIB test 3 (green).</strong> Less than 25% decrease in concentration between the peak and the last time point were observed in subject 008 (glucose-SIB test 1), subject 019 (glucose-SIB test 2) and subject 020 (glucose-SIB test 2) disqualifying these data for computational analysis. <br> <strong> Supplemental file 2. Capillary glucose concentrations in study participants during glucose-SIB test 1 (A) and 2 (B).</strong> <br> <strong>Supplemental file 3. Calculated model parameters in the study participants. </strong>Data in italics were excluded from calculations. (A) GSDIa patients with attenuated phenotype. (B) GSDIa patients with a severe phenotype. (C) Healthy volunteers. <br>
DOI: 10.6084/m9.figshare.14214362.v2
title: Fe-Mg-O isotope data of minerals in ultramafic rocks of the Pozantı-Karsantı ophiolites

description: Table 1 GPS location of the studied samples from the Pozantı-Karsantı ophiolite in southern Turkey<br>Table 2 Representative major elemental compositions of olivine and chromite in the rocks from the Pozantı-Karsantı ophiolite in southern Turkey.<br>Table 3 O and Li isotopic compositions of olivine in the rocks from the Pozantı-Karsantı ophiolite in southern Turkey.Table 4 Fe and Mg isotopic compositions of olivine and chromite in the rocks from the Pozantı-Karsantı ophiolite in southern Turkey and standards.
DOI: 10.6084/m9.figshare.11199776.v1
title: Supplementary Material for: Identification of Areas for Improvement in the Management of Bone Metastases in Patients with Neuroendocrine Neoplasms

description: <b><i>Background:</i></b> There is no global consensus on the optimal management of bone metastases (BMs) in neuroendocrine neoplasms (NENs). <b><i>Objectives:</i></b> To review current management and outcomes of patients with BMs in NENs, in order to identify areas for improvement. <b><i>Methods:</i></b> A retrospective study of all patients with NENs, except Grade 3 lung NENs (April 2002 to March 2018) was conducted. Baseline characteristics, nature of BMs, treatment received and overall survival (OS) were evaluated. Statistical analyses were performed using SPSS version 23.0/STATA v12. <b><i>Results:</i></b> Of 1,212 patients, 85 (7%) had BMs; median age 58 years. The majority had a gastro-entero-pancreatic primary (49%, <i>n</i> = 42) followed by lung (25%, <i>n</i> = 21), unknown primary (20%, <i>n</i> = 17), and “others” (6%, <i>n</i> = 5). Two-thirds (<i>n</i> = 57) had G1–2 neuroendocrine tumours, and 41% (<i>n</i> = 35) had functional tumours. Overall, 28% (<i>n</i> = 24) presented with synchronous BMs at first NEN diagnosis, and 55% (<i>n</i> = 47) developed BMs at the same time as other distant metastases. For the subpopulation of patients in whom BMs developed metachronously to other distant metastases (45%, <i>n</i> = 38), median time to development of BMs was 14.0 months. BMs were “widespread” in 61% (<i>n</i> = 52). Although only 22% (<i>n</i> = 19) reported symptoms at initial diagnosis of BMs, most (78%) developed symptoms at some time during the follow-up period (pain/hypercalcaemia 64%, skeletal-related events 20%). BMs were mainly managed with analgesia (44%, <i>n</i> = 37). Radiotherapy and bisphosphonates were used in 34% (<i>n</i> = 29) and 22% (<i>n</i> = 19) respectively. Surgery was rarely performed (2%, <i>n</i> = 2). Median OS from identification of BMs was 31.0, and 18.9 months from development of BMs-related symptoms. <b><i>Conclusions:</i></b> In this cohort study, most patients with BMs developed symptoms. The utility of radiotherapy and/or bisphosphonates should be prospectively and systematically explored further for its potential impact on patients’ quality of life and survival outcomes.
DOI: 10.6084/m9.figshare.4746697.v1
title: S-NPDR metadata.xlsx

description: S-NPDR metadata
DOI: 10.6084/m9.figshare.25143080.v2
title: <b>Mentor</b><b>ship Programme </b>

description: The study revealed that most students had high expectations of mentorship, emphasizing its importance. Year-wise analysis highlighted varying expectations, with Year 1 students needing more support during program transition.
DOI: 10.6084/m9.figshare.1494711.v1
title: SEM-EDX soil data

description: Data represent 2D chemical maps of soil that was resin impregnating and scanned by SEM-EDX at 15.8 microns resolution.
DOI: 10.6084/m9.figshare.10005971.v3
title: Data for 2019JG005240

description: This dataset belongs to a JGR-Biogeosciences manuscript entitled 'Isotope constraints on the sources of particulate organics in a subtropical deep reservoir'.
DOI: 10.6084/m9.figshare.23931627.v1
title: Supplementary Material for: Financial advisers’ and key informants’ perspectives on the Australian industry-led Moratorium on Genetic Tests in Life Insurance

description: Introduction: Genetic discrimination (GD) in the context of life insurance is a perennial concern in Australia and internationally. To address such concerns in Australia, an industry self-regulated Moratorium on Genetic Tests in Life Insurance was introduced in 2019 to restrict life insurers from using genetic test results in underwriting for policies under certain limits. Financial advisers (FAs) are sometimes engaged by clients to provide financial advice and assist them to apply for life insurance. They are therefore well-placed to comment on GD and the operation of the Moratorium. Despite this, the financial advising sector in Australia have yet to be studied empirically with regards to GD and the Moratorium. This study aims to capture this perspective by reporting on interviews with the financial advising sector. Methods: Ten semi-structured qualitative interviews were conducted with FAs and key informants and analysed using thematic analysis. Discussion/ conclusion(s): Participants’ level of awareness and understanding of the Moratorium varied. Participants reported mixed views on the Moratorium’s effectiveness and how it operates in practice, and perceived industry compliance. Participants also provided reflections on Australia’s current approach to regulating GD, with most participants supporting the concept of industry self-regulation but identifying a need for this to be supplemented with external oversight and meaningful recourse mechanisms for consumers. Our results suggest that there is scope to increase FAs’ awareness of GD, and that further research, consultation and policy consideration are required to identify an optimal regulatory response to GD in Australia
DOI: 10.6084/m9.figshare.19962770.v1
title: ChIP-seq bigwig files

description: ChIP-seq of Pygo2,H3K4me3, p53, Input
DOI: 10.25452/figshare.plus.22671172.v5
title: WBCIC-SHU Motor Imagery Dataset

description: <br>Brain-computer interfaces (BCIs) provide an effective means for users to control external software applications and devices solely by decoding their brain activity, without the need for muscle engagement. A large-scale, high-quality BCI dataset can stimulate researchers from related fields to develop advanced deep learning algorithms, thereby enriching the BCI domain. Therefore, creating an EEG dataset that supports the development and research of BCI systems is crucial. This dataset, derived from the World Robot Conference Contest-BCI Robot Contest MI, focuses on upper-limb or upper-and-lower-limb motor imagery (MI) tasks across three recording sessions. Sixty-two healthy, right-handed participants (ages 17–30, 18 females) with no prior BCI experience took part in this experiment. Of these, 52 subjects completed the two-class MI experiment, while 11 subjects participated in the three-class MI experiment. This dataset offers significant potential for a wide range of BCI-related research, including the analysis of inter-session variability for individual subjects and enhancing decoding algorithm performance.If the download of this version is slow, you can choose to download Version 3 in batches.<br>
DOI: 10.6084/m9.figshare.12971504.v1
title: Interviews plotting data

description: Data for plotting<br>
DOI: 10.26188/21127273.v2
title: Agent Miner : Evaluation results

description: The results of the Agent Miner algorithm evaluation on the nine BPIC datasets (2011,2012,2013,2014,2015_1,2017,2018,2019,2020tpd). <br> The python code of the agent miner algorithm implementation and evaluation is also included.
DOI: 10.6084/m9.figshare.17934200.v2
title: Extended Data 3: tRNAseq analysis of Blastocrithidia nonstop

description: <b>Individual alignments corresponding to each identified tRNA species in Blastocrithidia nonstop.</b><br>For tRNA sequencing, Illumina sequencing of cDNA of cytosolic RNA fraction corresponding to tRNAs was used. Cytosolic RNA fraction was obtained as described previously (Paris et al. 2021) and submitted to Arraystar, Inc. (Rockville, MD, USA) for tRNA sequencing analysis. Before the sequencing experiment, the integrity and quantity control of each RNA sample using agarose gel electrophoresis and the NanodropTM instrument was performed. For tRNA isolation over 2μg total RNA was resolved on urea-polyacrylamide gels and recovered within a size window of 60-100 nt for tRNA followed by coupled nucleotide demethylation and Hydro-tRNAseq method to further improve the efficiency of tRNA-seq library preparation, containing the following treatments: a) m1A and m3C demethylation of purified tRNA; b) limited alkaline hydrolysis of demethylated tRNA by carbonate buffer; c) calf intestinal phosphatase (CIP) dephosphorylation and then T4 polynucleotide kinase (T4 PNK) re-phosphorylation of the partially hydrolyzed tRNA fragments. Fragments of ∼19-35nt for partially hydrolyzed and re-phosphorylated tRNA were converted to small RNA sequencing libraries using NEBNext® Multiplex Small RNA Library Prep Set for Illumina® kit.The libraries were qualified and absolutely quantified using Agilent BioAnalyzer 2100. For tRNA sequencing on Illumina NextSeq 500 instrument, the sequencing type was 50-bp single-read.The Illumina sequencing yielded 7,912,517 reads with length of 50 nt. The reads were adapter- and quality-trimmed and mapped on the B. nonstop genome assembly to filter out low-quality and contaminating sequences. The 77 % of the trimmed reads that were successfully aligned on the assembly were used for further analysis.Firstly, vsearch v2.5.2 (Rognes et al., 2016) was used to cluster identical reads. 22,436 read clusters were obtained. To identify the origin of the sequences, clusters were aligned to B. nonstop tRNA and rRNA gene database using blastn from BLAST v.2.3.0+ (here and later in the text) (Camacho et al., 2009). The clusters together with their best BLAST hit (i.e., corresponding tRNA) were split into individual fasta files, and each dataset was aligned using MAFFT with “ --localpair --op 10 --ep 0 --maxiterate 1000” parameters. Each of the resulting alignments was manually analysed in Aliview (Larsson, 2014).<br>
DOI: 10.6084/m9.figshare.28680800.v1
title: Source data for Brabham et al. 2024 bioRxiv

description: Source data for Brabham et al. (2024) bioRxiv that includes raw data, uncropped images, and scripts used for data analysis and figure preparation. https://doi.org/10.1101/2024.06.25.599845
DOI: 10.25946/26148502.v1
title: Online Survey Dataset for Influence of Consumers’ Motivation, Opportunity and Ability in Leftover Food Management on Reducing Household Food Waste in Australia

description: Data were collected through an online survey from a sample of Australian households, The final sample, after removing the unusable responses yielded 1007 completed responses. The participants were recruited through a market research company, Dynata and the target households were accessed through their internal social research panels. The online survey was administered from 4th to 19th December 2023.
DOI: 10.25377/sussex.12833297.v1
title: Interview with Natasha, 16-17, British, working class, no religion. Women, Risk and AIDS Project, London, 1989. Anonymised version including field notes. (Ref: LJH36)

description: This interview is part of the Women, Risk and Aids Project (1989-90) archive which was created as part of the Reanimating Data Project (2018-20).<br>Anonymised transcript of an interview with Natasha, who would like to travel and eventually study a language at university - though her mother would have liked her to go into STEM subjects. Her sex education at school wasn't the best - it was taught by health education teachers, but she thinks that it came too late and that the boys in her class were too disruptive. Natasha has only had one, short, romantic relationship, but she is ok with this - she would have liked commitment, but thinks that her and her boyfriend were too young at the time. She is quite clued up about AIDS and risk, though doesn't think her peers are too concerned and have not changed any sexual behaviours despite knowing the facts. Natasha would like to use condoms in future sexual relationships, as she thinks that the pill is too dangerous. She has some interesting thoughts on gender, contraception and control within hetero-sexual relationships. Natasha would like children in the future. She isn't too keen on the idea of marriage, but is worried that there's no alternative in terms of symbolising commitment.
DOI: 10.6084/m9.figshare.5477728.v1
title: Concatenation-based species trees

description: Concatenation-based species trees in newick format. Each data set typically has four trees, including the previously reported tree, as well as the trees inferred by RAxML, IQ-TREE, and FastTree. Trees generated by independent RAxML searches (i.e. from independent starting trees) and by replicate IQ-TREE analyses are also included.
DOI: 10.6084/m9.figshare.7515146.v1
title: Compatibility of Beauveria bassiana in the laboratory for insecticides, herbicides and ripeners

description: ABSTRACT: The differences in the toxicity of pesticides, herbicides and ripeners for isolates AM 09, JAB 07, IBCB 07 e JAB 46 of Beauveria bassiana were evaluated through experiments conducted in culture medium. The isolates were cultured on potato dextrose agar (PDA) containing agrochemicals. Germination, growth and sporulation were evaluated and, based on these parameters, the toxicological classification of pesticides for each isolate was made. The insecticide Actara(r) was considered compatible with AM 09, moderately toxic for JAB 07 and toxic for IBCB 07 and JAB 46. Regente WG 800(r) was considered compatible with all isolates, while Temik 150(r) showed to be toxic. In relation to the herbicides, the product Glifosato Nortox(r) was considered compatible with AM 09, moderately toxic for IBCB 07 and JAB 46 and toxic for JAB 07. Plateau(r) was classified as moderately toxic for AM 09 and JAB 07, and toxic for IBCB 07 and JAB 46. Contain(r), DMA(r), Karmex(r), Sencor 480(r) e Velpar-K(r) were classified as toxic for all isolates. In the case of ripeners, both Curavial K(r) and Moddus(r) showed to be toxic for all the isolates. The results revealed that there is variation between isolates of B. bassiana regarding the toxicity profile of agrochemicals. AM 09 was the most tolerant to the toxic action of the products. Germination suffered minor effect than growth and sporulation, and JAB 07 was the isolate less affected by agrochemicals with regard to this parameter.
DOI: 10.6084/m9.figshare.6465836.v1
title: Additional file 1: of Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates

description: Table S1. In silico DNA-DNA hybridization (DDH) values showing Genome-genome distance [50] relationship values for the genomes of various B. pumilus, B. safensis, B. altitudinis strains. The genomes of Geobacillus kaustophilus, and B. subtilis subsp. subtilis str. 168 serving as outliers in the Firmicutes group and that of gram-negative E.coli MG1655, as a non-Firmicutes outlier. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.6697076.v2
title: Portal Project Teaching Database - excerpt

description: This is an excerpt from the dataset available on Figshare https://doi.org/10.6084/m9.figshare.1314459.v9The Portal Project Teaching Database is a simplified version of the Portal Project Database designed for teaching. It provides a real world example of life-history, population, and ecological data, with sufficient complexity to teach many aspects of data analysis and management, but with many complexities removed to allow students to focus on the core ideas and skills being taught.<br>
DOI: 10.6084/m9.figshare.3521387.v1
title: Appendix C. Regional Species Lists for wild bees included in the species richness response analyses.

description: Regional Species Lists for wild bees included in the species richness response analyses.
DOI: 10.6084/m9.figshare.22774718.v1
title: The CCD and LTO emissions of each route and airline from the international routes in Africa in 2020

description: The CCD and LTO emissions of each route and airline from the international routes in Africa in 2020
DOI: 10.25403/upresearchdata.23984730.v1
title: Antimicrobial effects of Pathogen Box compounds against Mycobacterium tuberculosis Neisseria gonorrhoeae

description: This dataset describes the anti-mycobacterial, anti-gonococcal, and autophagic effects of Medicines for Malaria Ventures Pathogen Box compounds. The dataset contains novel compounds with potent activity against <em>Mycobacterium tuberculosis</em> and <em>Neisseria gonorrhoeae.</em>
DOI: 10.6084/m9.figshare.25605216.v1
title: Data and code for HMCG-LGBM

description: The data and codes for the paper titled “Enhanced prediction of origin-destination flows by considering heterogeneous mobility patterns with community detection and graph attention networks”.