cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bvd647g3mc.2
title: Early IFN-a signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19

description: Supplemental tables of the publication "Early IFN-a signatures and persistent dysfunction are distinguishing features of NK cells in severe COVID-19" Benjamin Krämer et al., 2021. 

Sup. Table S1: Cohort details [related to all Figures]
Sup. Table S2: marker for NK selection and NK subtype marker gene list  from the scRNA-seq analyses cohort 1 [related to Figure 2A+D+C and S2A]
Sup. Table S3: Module marker gene list and function analysis from the scRNA-seq analyses cohort 1 [related to Figure 2B]
Sup. Table S4: Module marker gene list, function analysis, TF and ligand prediction from the scRNA-seq analyses cohort 1 [related to Figure 3C]
Sup. Table S5: List of antibodies used for multi-color flow cytometry [related to Figures 1, S1, 2, S2, 3, S3, S4 S6, 7, S7]
Sup. Table S6: Number of donors, samples and cells by experiment [related to all figures]
Sup. Table S7: Oligo-Primer sequences  [related to STAR methods]

Benjamin Krämer, Rainer Knoll, Lorenzo Bonaguro, Michael ToVinh, Jan Raabe, Rosario Astaburuaga-García, Jonas Schulte-Schrepping, Kim Melanie Kaiser, Gereon J. Rieke, Jenny Bischoff, Malte B. Monin, Christoph Hoffmeister, Stefan Schlabe, Elena De Domenico, Nico Reusch, Kristian Händler, Gary Reynolds, Nils Blüthgen, Gudrun Hack, Claudia Finnemann, Hans D. Nischalke, Christian P. Strassburg, Emily Stephenson, Yapeng Su, Louis Gardner, Dan Yuan, Daniel Chen, Jason Goldman, Philipp Rosenstiel, Susanne V. Schmidt, Eicke Latz, Kevin Hrusovsky, Andrew J. Ball, Joe M. Johnson, Paul-Albert Koenig, Florian I. Schmidt, Muzlifah Haniffa, James R. Heath, Beate M. Kümmerer, Verena Keitel, Björn Jensen, Paula Stubbemann, Florian Kurth, Leif E. Sander, Birgit Sawitzki, Deutsche COVID-19 OMICS Initiative (DeCOI), Anna C. Aschenbrenner, Joachim L. Schultze, Jacob Nattermann
Summary
Longitudinal analyses of the innate immune system including earliest time points are essential to understand the immunopathogenesis and clinical course of COVID-19. Here, we performed a detailed characterization of natural killer cells in 205 patients (403 samples, day 2-41 after symptom onset) from four independent cohorts using single-cell transcriptomics and proteomics together with functional studies. We found elevated IFN-α plasma levels in early severe COVD-19 alongside increased NK cell expression of ISGs and genes involved in IFN-α signaling, while upregulation of TNF-induced genes was observed in moderate disease. NK cells exert anti-SARS-CoV-2 activity but are functionally impaired in severe COVID-19. Further, NK cell dysfunction may be relevant for development of fibrotic lung disease in severe COVID-19, as NK cells exhibited impaired anti-fibrotic activity. Our study indicates preferential IFN-α and TNF responses in severe and moderate COVID-19, respectively, and associates prolonged IFN-α-induced NK cell response with poorer disease outcome.
DOI: 10.17632/tj8wd9yrdm.2
title: Estudio de Usuarios Biblioteca UTB

description: González Ramos, Gloria.
Estudio de Usuario del Sistema de Bibliotecas UTB /  Gloria González, Dora Lilia Sepúlveda -- Cartagena de Indias : Universidad Tecnológica de Bolívar, 2020.

1. Estudios de Usuarios. 2. Nivel de satisfacción. 3. Servicios Biblioteca.
DOI: 10.6084/m9.figshare.16499151
title: Fish caught in constructed wetlands near Lake Waikare using Gee minnow traps

description: Fish caught in constructed wetlands near Lake Waikare using Gee minnow traps<br><br><b>Type of waterbody:</b> Wetland<br><br><b>Variables:</b> Fish Species Counts; Net length; Net mesh size; Net type; Number of nets; Time set; Water Temperature<br><br><b>Start date:</b> 2013-07-25<br><br><b>End date:</b> 2013-08-30<br><br><b>Region:</b> Waikato<br><br><b>Wetland:</b> Constructed wetlands near Lake Waikare<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.17632/n77wc67k4t.1
title: Supplementary Material - Acute and chronic effects of cortisol on milk yield, the expression of key receptors, and apoptosis of mammary epithelial cells in Saanen goats. Bomfim et al., 2021.

description: These Figures corresponds the Supplementary Material of manuscript Acute and chronic effects of cortisol on milk yield, the expression of key receptors, and apoptosis of mammary epithelial cells in Saanen goats. Bomfim et al., 2021.
DOI: 10.6084/m9.figshare.16499154
title: Fish caught in constructed wetlands near Lake Whangape using Gee minnow traps

description: Fish caught in constructed wetlands near Lake Whangape using Gee minnow traps<br><br><b>Type of waterbody:</b> Wetland<br><br><b>Variables:</b> Fish Species Counts; Net length; Net mesh size; Net type; Number of nets; Time set; Water Temperature<br><br><b>Start date:</b> 2013-06-25<br><br><b>End date:</b> 2013-08-30<br><br><b>Region:</b> Waikato<br><br><b>Wetland:</b> Constructed wetlands near Lake Whangape<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.17632/hvp58h6jc7.1
title: Hyperglycemia in Acute COVID-19 is Characterized by Insulin Resistance and Adipose Infectivity by SARS-CoV-2: Raw western blot images

description: Raw western blot images from Figure 4B, additional lane to the right (not shown in the paper) is a positive control using lysate from mouse visceral adipose tissue.
DOI: 10.17632/fxf6ysvw89.2
title: Encuesta de Satisfacción del Usuario SUPERSALUD

description: La Superintendencia Delegada para la Protección al Usuario, a través de la Dirección de Atención al Usuario, Grupo de Atención al Usuario, en cumplimiento del manual de procesos y procedimientos de la entidad, con el objetivo de conocer la satisfacción de los ciudadanos y las ciudadanas respecto del servicio de atención personalizada brindada en la Superintendencia Nacional de Salud, dispone de la encuesta que responde el usuario cuando acude en demanda de trámites y servicios.
DOI: 10.6084/m9.figshare.16499157
title: Fish caught in constructed ponds in the Whangamarino wetland using Gee minnow traps

description: Fish caught in constructed ponds in the Whangamarino wetland using Gee minnow traps<br><br><b>Type of waterbody:</b> Wetland<br><br><b>Variables:</b> Fish Species Counts; Net length; Net mesh size; Net type; Number of nets; Time set; Water Temperature<br><br><b>Start date:</b> 2013-07-16<br><br><b>End date:</b> 2013-09-03<br><br><b>Region:</b> Waikato<br><br><b>Wetland:</b> Constructed ponds in the Whangamarino wetland<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499160
title: Lake Ohinewai (2011-2014)

description: Fish caught by boat electrofishing in Lake Ohinewai during mark-recapture study 2011-2014<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Area Fished; EF % range; Fish Species Counts; Pass number; Time fished; Water Temperature<br><br><b>Start date:</b> 2011-01-17<br><br><b>End date:</b> 2014-12-04<br><br><b>Lake:</b> Lake Ohinewai<br><br><b>Region:</b> Waikato<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499163
title: Lake Ohinewai (2011-2014) netting

description: Fish caught by netting in Lake Ohinewai during mark-recapture study 2011-2014<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Fish Species Counts; Net type; Number of nets<br><br><b>Start date:</b> 2011-01-18<br><br><b>End date:</b> 2014-12-04<br><br><b>Lake:</b> Lake Ohinewai<br><br><b>Region:</b> Waikato<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499166
title: Rotoehu discrete water quality data 2011 - 2015

description: Nutrient concentrations and physical measurements from Lake Rotoehu monitoring for the period December 2011 to May 2015. Data includes sites adjacent to artificial mixing devices (Site 1 (2012-2015) and Site 3 (2014-15)) and a control site (Site 2). See University of Waikato ERI reports 59 and 57 for further details.<br><br><b>Quality control:</b> Analysed by; Analytical device manufacturer; Analytical method; Date of analysis; Lower analytical detection limit; Reference for analytical method; Sampling device; Unit of lower analytical detection limit; Unit of upper analytical detection limit; Upper analytical detection limit<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Ammonium; Chlorophyll a; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Nitrate; Nitrate + Nitrite; Nitrite; Phosphate; Secchi Disk; Specific Conductance; Total Nitrogen; Total Phosphorus<br><br><b>Start date:</b> 2011-12-15<br><br><b>End date:</b> 2015-05-15<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.17632/8k5d9nb5st.2
title: Data of repellent, ovicidal, larvicidal and adulticidal action of a nanoemulsion of Citronella essential oil (Cymbopogon winterianus) on Cochliomyia hominivorax (Diptera: Calliphoridae)

description: Raw data from a larvicidal efficacy trial with Cochliomyia hominivorax (Diptera: Calliphoridae) and a commercial citronella essential oil nanoemulsion
DOI: 10.6084/m9.figshare.14910486.v3
title: Removing Redundant Statements in Amplified Test Cases

description: Test amplification generates new tests by modifying existing, manually written tests. Up until now, this process preserves statements that were relevant for the original test case but are no longer needed for the behavior of the new test case. These unnecessary statements impact the readability of the tests in question. As a part of the effort to make amplified test cases more readable, we investigate dynamic slicing, taint analysis and static analysis as approaches to remove redundant statements. We design and evaluate a simple static analysis approach that we implemented as part of DSpot. Our empirical evaluation on 274 amplified test cases shows that the implemented approach works well: while being rudimentary, it is able to remove a significant portion of the redundant statements in the amplified test cases. While the removal of the statements themselves is relatively fast, verifying that the tests still work as intended through mutation testing is still resource-intensive.
DOI: 10.6084/m9.figshare.16499172
title: 2011-12-15 13-17 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Conductivity; Density; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2011-12-15<br><br><b>End date:</b> 2011-12-15<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499175
title: 2012-01-11 11-18 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Conductivity; Density; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2012-01-11<br><br><b>End date:</b> 2012-01-11<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499178
title: 2013-01-31 12-29 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2013-01-31<br><br><b>End date:</b> 2013-01-31<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499184
title: 2013-02-15 12-12 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2013-02-15<br><br><b>End date:</b> 2013-02-15<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499187
title: 2013-05-22 11-15 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2013-05-22<br><br><b>End date:</b> 2013-05-22<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16499190
title: 2014-12-19 11-53 Lake Rotoehu

description: A CTD cast on Lake Rotoehu<br><br><b>Quality control:</b> Accuracy; Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2014-12-19<br><br><b>End date:</b> 2014-12-19<br><br><b>Lake:</b> Lake Rotoehu<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.17632/4t8j9dtjv4.1
title: Thermal tolerance of cyprinids data

description: All data from: Thermal tolerance of cyprinids along an urban-rural gradient: Plasticity, repeatability and effects of swimming and temperature shock
Jay A. Nelson *, Kelly J. Rieger, Danielle Gruber, Melinda Cutler, Bailee Buckner, Christopher E. Oufiero
Journal of Thermal Biology 100 (2021) 103047