cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.ch10ss4/2
title: DataBase

description: Soil Organic Carbon time series (with Metadata and references)
DOI: 10.5061/dryad.cq47n7s/1
title: Medeiros_Hawaii_plant_functional_traits_processed

description: Trait values with units for all traits measured in 3 individuals per species in 20 species from the MWF (Montane Wet Forest; Laupahoehoe) and 15 species from the LDF (Lowland Dry Forest; Palamanui) plots in Hawaii.
DOI: 10.5061/dryad.cq47n7s/2
title: Medeiros_Hawaii_plant_traits_sp_means

description: Species mean trait values (with units; n = 3) for all traits measured in 20 species from the MWF (Montane Wet Forest; Laupahoehoe) and 15 species from the LDF (Lowland Dry Forest; Palamanui) plots in Hawaii.
DOI: 10.5061/dryad.cq47n7s/3
title: Medeiros_Hawaii_plant_functional_traits_raw

description: Trait values with units for all traits measured in all sampled individuals (N between 1 and 8) in 20 species from a MWF (Montane Wet Forest; Laupahoehoe) and 15 species from a LDF (Lowland Dry Forest; Palamanui) in Hawaii.
DOI: 10.5061/dryad.db8853f/1
title: Genotype

description: Microsatellite genotyping data for 837 brown bears.
DOI: 10.5061/dryad.f53j0dk/1
title: raw data

description: SNPs data for A. longifolia, P. spinosa and P. lupulina
DOI: 10.5061/dryad.f57g6h5/1
title: female.choice.data

description: CSV file with data from each female choice trial (including those that had to be excluded from the results due to no courtship). README file contains descriptions of each variable/column.
DOI: 10.5061/dryad.f57g6h5/2
title: female.choice.analysis

description: R code for analyzing female choice data, as in paper.
DOI: 10.5061/dryad.fd15ff0/1
title: Study1RscriptGLM

description: Rscript for GLM for study 1 of manuscript
DOI: 10.5061/dryad.fd15ff0/2
title: csv for study 1 analysis

description: csv file for study 1 analyses. to be used with study 1 r script.
DOI: 10.5061/dryad.fd15ff0/3
title: rscriptstudy2

description: r script for study 2
DOI: 10.5061/dryad.fd15ff0/4
title: csvfilestudy2

description: csv file for study 2 to go with r script study 2
DOI: 10.5061/dryad.fd15ff0/5
title: study3rscript

description: r script for study 3
DOI: 10.5061/dryad.fd15ff0/6
title: csv file study 3

description: csv file for study 3 analyses, linked to study 3 r script
DOI: 10.5061/dryad.fd15ff0/7
title: rscript study 4

description: r script for study 4 analyses
DOI: 10.5061/dryad.g487s21/2
title: genepop_6SNPs_divergent_IMPUTED

description: Imputed genotypes data for potentially selected SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/3
title: genepop_8246SNPs_NEUTRAL_notimputed

description: Genotypes data for putatively neutral SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/4
title: genepop_8246SNPs_NEUTRAL_IMPUTED

description: Imputed genotypes data for putatively neutral SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/5
title: genepop_11321SNPs_IMPUTED

description: Imputed genotypes data for all filtered SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/6
title: genepop_11321SNPs_notimputed

description: Genotypes data for all filtered SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/7
title: genepop_11321SNP_6clusters_IMPUTED_33indv

description: Imputed genotypes data for putatively all filtered SNPs with individuals in 6 cluters (equal sample size, n=33) in Genepop format
DOI: 10.5061/dryad.g487s21/8
title: genepop_11321SNP_6clusters_IMPUTED

description: Imputed genotypes data for putatively all filtered SNPs with individuals in 6 clutersin Genepop format
DOI: 10.5061/dryad.hm573/12
title: gustDataForR_2018-06-25_21-11-15

description: Data file in .mat form with one row for each trial (for loading into R workspace).
DOI: 10.5061/dryad.hm573/15
title: Bird_tracked_points

description: Zip file containing manually digitized xy and reconstructed xyz points for each bird gust transit.
DOI: 10.5061/dryad.hm573/16
title: Bird_trajectories_and_kinematics

description: Zip file containing a MATLAB Struct file with trajectory and kinematics data.
DOI: 10.5061/dryad.hm573/17
title: Kinematics_Processing_Code_MATLAB

description: MATLAB scripts for calculating body, wing, and tail kinematics from raw 3D point trajectories.
DOI: 10.5061/dryad.hm573/18
title: Hummingbird flight through gusts Badger et al 2018

description: Movie 1: Hummingbird and glider transits through a fast upward gust.
DOI: 10.5061/dryad.hm573/19
title: Initialize_AirKnife_Data_11.30.18

description: R script for importing and pre-processing data (including clustering).
DOI: 10.5061/dryad.hm573/20
title: AirKnife_Data_Analysis_11.30.18

description: R script that conducts all analyses involving bird responses to the air gust.
DOI: 10.5061/dryad.hm573/21
title: AirKnife_Data_R_Workspace_11.30.18

description: R workspace after running Initialize_AirKnife_Data.
DOI: 10.5061/dryad.hm573/8
title: Glider_tracked_points

description: Zip file containing raw tracked xy and reconstructed 3D position files for each glider trial.
DOI: 10.5061/dryad.hm573/9
title: Glider_Data_Analysis_12.17.17

description: R script that conducts all analyses involving glider responses the air gust.
DOI: 10.5061/dryad.m7b43mm/1
title: Simulation code for evolution of plasticity and reproductive investment

description: This is the main matlab code for a function that can be used to simulate the coevolution of reversible plasticity and reproductive investment. Please see paper for full explanation and justification of simulation. Requires ddist.m
DOI: 10.5061/dryad.mc24m6j/1
title: SAFS_Water

description: Summary of water behavior, physiological variables and parasite burden in South American fur seal pups
DOI: 10.5061/dryad.ms768r4/1
title: Large-scale_prediction_archive

description: This compressed archive includes multiple other files including data files (in .rdata format) GIS shapefiles (in folders with the associated .shp, .shx, .dbf, and .prj files for each map) and an R script that will run all analyses and plot all figures. Specific descriptions of each file are supplied in the README.TXT file.
DOI: 10.5061/dryad.n65r7p0/1
title: Dryad_supp_heartdata

description: Raw heart mass and body mass data for Peromyscus maniculatus and Peromyscus leucopus acclimated to normobaria (approximately sea level) and hypobaric hypoxia (60 kPa barometric pressure) for 20 weeks.
DOI: 10.5061/dryad.p65mc58/16
title: POE4092_R1.fq

description: Raw Illumina reads for POE4092
DOI: 10.5061/dryad.p65mc58/17
title: LNG0172_R1.fq

description: Raw Illumina reads for LNG0172
DOI: 10.5061/dryad.p65mc58/18
title: LNG0173_R1.fq

description: Raw Illumina reads for LNG0173
DOI: 10.5061/dryad.p65mc58/19
title: LNG0170_R1.fq

description: Raw Illumina reads for LNG0170
DOI: 10.5061/dryad.p65mc58/20
title: LNG0179_R1.fq

description: Raw Illumina reads for LNG0179
DOI: 10.5061/dryad.p65mc58/23
title: LNG0177_R1.fq

description: Raw Illumina reads for LNG0177
DOI: 10.5061/dryad.p65mc58/24
title: LNG0174_R1.fq

description: Raw Illumina reads for LNG0174
DOI: 10.5061/dryad.p65mc58/25
title: LNG0186_R1.fq

description: Raw Illumina reads for LNG0186
DOI: 10.5061/dryad.p65mc58/26
title: LNG0171_R1.fq

description: Raw Illumina reads for LNG0171
DOI: 10.5061/dryad.p65mc58/27
title: LNG0169_R1.fq

description: Raw Illumina reads for LNG0169
DOI: 10.5061/dryad.pm929m9/1
title: Rangeland Productivity and Land Tenure Data

description: These are the data used for analysis in the Robinson et al. 2019 manuscript entitled, Patterns of rangeland productivity and land ownership: Implications for conservation and management.
DOI: 10.5061/dryad.qg215qn/1
title: filtered_set

description: The filtered SNPs in ped format.
DOI: 10.17632/3g3883z2kg.1
title: Data for: Uniform NiFe Phosphide Nanosheets Arrays on Carbon Cloth as High-Performance Oxygen Evolution Catalysts

description: XR,SEM,TEM,XPS and OER data are included in this file
DOI: 10.17632/gcvjdnxy5v.6
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: The parameters of active LAMOST spectra observed by LAMOST survey.
DOI: 10.17632/gd3sj6r6cw.1
title: Data for: 3296755

description: In the research study Pavement condition index, Spot speed, Skid resistance, Pavement rating, Deduct value. values were calculated for a selected road and its results were correlated to its pavement Rehabilitation period.
DOI: 10.17632/kmf5yt2vsw.6
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: The star's parameters
DOI: 10.17632/tct5pmft7s.1
title: Data for: Understanding Lack of Development in Early Career ESOL Teachers’ Practical Knowledge
DOI: 10.17632/w4pht37rzp.6
title: Chromospheric activity of Periodic Variable stars (including Eclipsing binaries) observed in DR2 LAMOST stellar spectral survey

description: Parameters of several chrompsheric activity indicators of LAMOST spectral targets.
DOI: 10.5061/dryad.3q78q0g/1
title: Rcat data

description: microsatellite genotypes
DOI: 10.5061/dryad.5vf0143/1
title: Female Playback Experiment

description: Behavioral data collected from "Female Silk Experiment." For female states, "v" = virgin, "m" = mated, "f" = fed, and "s" = starved (referred to as "deprived" in manuscript). "LatencyOrient" = the time elapsed before first orient toward stimulus with "LatOrientCensor" as a censor where 1 represents a trial with recorded orient behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "LatReceptivity" = the time elapsed before first receptivity display with "LatRecCensor" as a censor where 1 represents a trial with recorded receptivity behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "LatRecFromOrient" = the time elapsed between first orient and first receptivity display with "LTRFFOcensor" as a censor where 1 represents a trial with recorded receptivity after orient behaviors (values of 301 indicate behavior did not occur in the 300 second trial). "Pivot," "Settle," and "TLE" are individual components of female receptivity displays. "ReceptivitySum" is the sum of those three displays and "ReceptivityRate" is that sum divided by 300 seconds (trial length). "AssociationTime" is the length of time, in seconds, that a female was associated with the stimulus (defined by presence on top of disc bender or with body directly in front of screen). "AssociationCensor" is a censor where 1 represents a trial where a female interacted with the stimulus.
DOI: 10.5061/dryad.818ms.1
title: Data from: Phylogenetic composition of host plant communities drives plant-herbivore food web structure
DOI: 10.5061/dryad.818ms.1/1.1
title: Insect data and host plant associations

description: Insect data from our sampling sites used in the food-web analysis.
DOI: 10.5061/dryad.818ms.2
title: Data from: Phylogenetic composition of host plant communities drives plant-herbivore food web structure
DOI: 10.5061/dryad.818ms.2/1.2
title: Insect data and host plant associations

description: Insect data from our sampling sites used in the food-web analysis.
DOI: 10.5061/dryad.8br9852/1
title: PCNT and familial intracranial aneurysms-Supplemental data

description: (1) Detailed clinical description of additional PCNT mutation carriers (Text). (2) Supplementary Table 1. Fifty five variants were shared between the two patients from family 7042 and absent in the healthy individuals from this family. (3) Supplementary Table 2. Family 7019. Variants present in patients III.2 and III.4 not carried by healthy individuals IV.1 and IV.2 from family 7019. (4) Supplementary Table 3. PCNT exon 38 primers. (5) Supplementary Table 4. Microsatellites primers used for the haplotype sharing analysis in families 7019 and 8159; * = sizes based on the microsatellite analysis of 80 Caucasian samples. (6) Supplementary Table 5. Demographic data of the samples used to estimate the allele frequency of customized PCNT microsatellite. (7) Supplementary Table 6. Mean read depth (coverage) for the entire PCNT gene and for exon 38 for each individual with Whole Exome Sequencing data. (8) Supplementary Table 7. Sixty three variants were shared between the two patients from family 7042 and present also in the healthy individuals from this family. (9) Supplementary Table 8. Sixty three variants were shared between the two patients from family 7019 and present also in the healthy individuals from this family. (10) Supplementary Table 9. Family 7099 PCNT variants with MAF &lt;1%. (11) Supplementary Figure 1. Patient 7019 III.2 CTA. (12) Supplementary Figure 2. Patient 7042 II.1 radiologic studies. (13) Supplementary Figure 3. Patient 7099 II.2 radiologic studies. (14) Supplementary Figure 4. Patient 8080 II.2 radiologic studies. (15) Supplementary Figure 5. Patient 8091 III.1 radiologic studies. (16) Supplementary Figure 6. Patient 8159 III.3 CTA. (17) Supplementary Figure 7. Haplotype reconstruction for families 7019 and 8159 sharing mutation p.Val2821Leu. (18) Supplementary Figure 8. Coding isoforms and processed transcripts of PCNT gene. (19) Supplementary Figure 9. Phylogenetic tree depicting evolutionary relationship of PCNT gene across species. (20) Supplementary Figure 10. A. PCNT gene conservation.
DOI: 10.5061/dryad.8dc747r/1
title: Data for Strain specific differences in PSII repair in picocyanobacteria

description: Contains bioinformatic, physiology, protein and RT PCR data. Includes README files in each subfolder.
DOI: 10.5061/dryad.b387qp0/3
title: File containing data for the influence of temperature and fork length on kud50% and kud95%

description: This data file contains weekly kud50% and kud95% data for each individual from each location throughout the study period. The arrray.area value in the final column is what was used as a weighting factor within the models to account for variation in receiver  numbers and thus the area that the receivers covered.Tag.id is used in the model as the random effect and temp is weekly temperature at each location. This data was used to make Figure3 and FigureSF2.
DOI: 10.5061/dryad.c4r1gf3/1
title: C codes, two alleles, no drift

description: A faster program written in C. Only works for 2 cultural allele and without drift.
DOI: 10.5061/dryad.f1898rb/1
title: Selection applied

description: In the F1 offspring of ENU treated males, divergent selection was applied within each family to generate fast swimming and slow swimming selection treatments. This file contains the information to calculate selection applied, and also underpins the analysis of speed in viable versus inviable families.
DOI: 10.5061/dryad.f1898rb/2
title: Selection_response

description: This file contains information on swimming speed and body size of all individual F2 fish assayed. The response to the divergent selection applied to their F1 parents was determined through analysis of the tank means calculated from this data.
DOI: 10.5061/dryad.f1898rb/3
title: Viability

description: Data file containing information on the proportion of surviving embryos of crosses within and among F2 families of ENU treated males, divided into fast versus slow selection treatments.
DOI: 10.5061/dryad.f3b04rm/1
title: Summary of Analysis of Participants’ Exercise Performance Data

description: Summary of Analysis of Participants’ Exercise Performance Data
DOI: 10.5061/dryad.f3b04rm/2
title: Two Groups’ Device Usage Patterns Over Time

description: Two Groups’ Device Usage Patterns Over Time (High-usage group vs Low-usage group)
DOI: 10.5061/dryad.f3h1342/1
title: Empirical data for Cramer et al

description: The data is in a Microsoft Excel spreadsheet with multiple worksheets. The worksheets detail the site geographic locations, vegetation cover change (from aerial photographs), soil nutrients, soil elemental composition (XRF analysis), particle sizes, C and N isotopes, charcoal and vegetation composition for each site.
DOI: 10.5061/dryad.fd15ff0/10
title: study5csv

description: csv for study 5 analyses, linked to study 5 r script
DOI: 10.5061/dryad.fd15ff0/8
title: study4csv

description: csv file for study 4 analyses , linked to study 4 r script
DOI: 10.5061/dryad.fd15ff0/9
title: rscriptstudy5

description: r script for study 5 analyses
DOI: 10.5061/dryad.g23s038/1
title: Figure 1 data - Burkholderia prevalence

description: This is an excel data file with the Burkholderia prevalence in D. discoideum used to create figure 1. It show the number of D. discoideum sampled from each location and the identity of the Burkholderia.
DOI: 10.5061/dryad.g23s038/2
title: Figure 3 data - MLST traits

description: Excel file used to generate the symbiotic trait figure. This includes Burkholderia species and strain, and the scaling for each trait.
DOI: 10.5061/dryad.g23s038/3
title: Figure6_SporeProductivity

description: This excel file contains the sport counting data for each Burkholderia infected D. discoideum clone.
DOI: 10.5061/dryad.g23s038/4
title: BurkholderiaMLSAconcatenatedALN

description: This is a fasta file that contains the concatenated alignment for all Burkholderia strains in this study.
DOI: 10.5061/dryad.g487s21/10
title: 11321SNPs_matrix012

description: Matrix (genotypes coded as 012) data for all filtered SNPs in Genepop format
DOI: 10.5061/dryad.g487s21/11
title: haplotypes_4307

description: Haplotypes data for genetic diversity in tsv format
DOI: 10.5061/dryad.g487s21/12
title: environmental_data_pcnmRDA

description: Environmental data for the PCNM+RDA analysis
DOI: 10.5061/dryad.g487s21/13
title: matrix012_6SNPs_divergent_IMPUTED

description: Matrix (genotypes coded as 012) data for potentially selected SNPs
DOI: 10.5061/dryad.g487s21/14
title: matrix012_8246SNPs_NEUTRAL_IMPUTED

description: Matrix (genotypes coded as 012) data for putatively neutral SNPs
DOI: 10.5061/dryad.g487s21/15
title: population_map

description: Individual's population membership
DOI: 10.5061/dryad.g487s21/16
title: read_me

description: Description of all files.
DOI: 10.5061/dryad.g487s21/9
title: environmental_data_polygenicRDA

description: Environmental data for the polygenic RDA analysis
DOI: 10.5061/dryad.hm573/22
title: AirKnife_Data_R_Workspace_11.30.18_Results_Calculated

description: R workspace after running AirKnife_Data_Analysis
DOI: 10.5061/dryad.m7b43mm/10
title: Simulated data for coevolution of lifespan and reversible plasticity when phenotypic mismatch affect only fecundity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for the case where phenotypic mismatch with the environment affect only  reproductive success but not adult mortality, baseline parameter values otherwise. These results are described in Supplementary note 4 and illustrated in Supplementary figure 8. The code used to generate this data is modified from: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/2
title: Matlab function to draw number of offspring

description: This is the function required to run evomemory.m simulation function. With this function you can sample n individuals from a discrete distribution given in p.
DOI: 10.5061/dryad.m7b43mm/3
title: Matlab code to run the function evomemory.m for a range of parameters and save resulting data

description: This is the code for running the evomemory.m function to simulate data for a range of parameter values and save the data that has been generated.
DOI: 10.5061/dryad.m7b43mm/4
title: R code to generate figures as presented in paper

description: This R code generates all the figures presented in Ratikainen&Kokko 2019 both for the main paper and the supplementary material. The code imports the data simulated with the matlab code lifeplast.m, evomemory.m and ddists.m. Make sure data files are in the same folder as R code file.
DOI: 10.5061/dryad.m7b43mm/5
title: Simulated data illustrating the coevolution of lifespan and reversible plasticity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for baseline parameter values. The code used to generate this data can be found here: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/6
title: Simulated data for coevolution of lifespan and reversible plasticity with low cost of plasticity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for low costs of updating (kappa=0.2), baseline parameter values otherwise. These results are described in Supplementary note 1 and illustrated in Supplementary figure 4. The code used to generate this data can be found here: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/7
title: Simulated data for coevolution of lifespan and reversible plasticity with high cost of plasticity

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for high costs of updating (kappa=0.6), baseline parameter values otherwise. These results are described in Supplementary note 1 and illustrated in Supplementary figure 5. The code used to generate this data can be found here: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/8
title: Simulated data for coevolution of lifespan and reversible plasticity with high cost of reproduction

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for high costs of reproduction (rho=0.05), baseline parameter values otherwise. These results are described in Supplementary note 2 and illustrated in Supplementary figure 6. The code used to generate this data can be found here: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.m7b43mm/9
title: Simulated data for coevolution of lifespan and reversible plasticity when phenotypic mismatch affect only mortality

description: This datafile contain the electronically simulated data generated by the model described in Ratikainen & Kokko 2019, for the case where phenotypic mismatch with the environment affect only adult mortality but not reproductive success, baseline parameter values otherwise. These results are described in Supplementary note 3 and illustrated in Supplementary figure 7. The code used to generate this data is modified from: lifeplast.m, evomemory.m and ddists.m. Please see paper for full explanation and justification of the simulation model.
DOI: 10.5061/dryad.mr5c0vs/1
title: all birds

description: This file includes all the females that got two injections and was offered a nesting opportunity.ID = Identity of the bird
Treatment = Injection with either phosphate buffered saline (PBS) or tetanus-toxoid vaccine
Tarsus length = Tarsus length (mm) of the female
Body mass = Body mass (g) of the female
Scaled index = Condition index of the female