cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5937268.v2
title: Global Marine Environment Dataset (GMED)

description: The Global Marine Environment Datasets (GMED) is a compilation of publicly available climatic, biological and geophysical environmental layers featuring present, past and future environmental conditions. GMED covers the widest available range of environmental layers from a variety of sources and depths from the surface to the deepest part of the ocean. It has a uniform spatial extent, high-resolution land mask (to eliminate land areas in the marine regions), and high spatial resolution (5 arc-minute, c. 9.2 km near equator). The free online availability of GMED enables rapid map overlay of species of interest (e.g. endangered or invasive) against different environmental conditions of the past, present and the future, and expedites mapping distribution ranges of species using popular SDM algorithms. This archive features a snapshot of GMED dataset in 2019 as a single archive.
DOI: 10.6084/m9.figshare.5936896
title: RV reducer

description: The data set is based on the acceleration signal, consisting of four different performance RV reducers, each representing a performance.
DOI: 10.6084/m9.figshare.5936854
title: DockerCon Austin 2017 tweet extract

description: Tweets using #dockercon extracted in April 2017<br>
DOI: 10.6084/m9.figshare.5936854.v1
title: DockerCon Austin 2017 tweet extract

description: Tweets using #dockercon extracted in April 2017<br>
DOI: 10.6084/m9.figshare.5936764
title: Dynamic time sweep measurement of sludge for four different concentrations (3%, 4%, 5% & 5.5%) at four different gas flow rates (1 Lpm to 7 LPM).

description: This submission contains the raw rheometer files from time sweep measurements of waste activated sludge (total solids content = 3%, 4%, 5% & 5.5% ). The sludge samples were measured at various gas flow rates (1 LPM to 7 LPM). The dynamic time sweep measurements were generated from the sludge sample first without gas at 0.09% strain across 25 minutes. Then the sample was conditioned and the gas was injected for 20 minutes before the measurement at similar conditions. Similar procedure was repeated for different concentrations <br> The measurements were carried out on a DHR-3 rheometer (TA-Instruments), equipped custom made cup. For detail procedure refer: Bobade, V, et al. 2017, 'Impact of gas injection on the apparent viscosity and viscoelastic property of waste activated sewage sludge', <i>Water Research</i>, vol. 114, pp. 296-307. Detailed experimental protocol is recorded in the .tri (TRIOS) file attached with each data set. This file can be read using the TRIOS software made available on TA-Instruments website (http://www.tainstruments.com/support/software-downloads-support/downloads/). Rheometer geometry dimensions and other details are also obtainable from these files. Please contact authors for access to files.
DOI: 10.6084/m9.figshare.5936677
title: SO_Strength

description: Static Optimization files for evaluating HYOID model strength
DOI: 10.6084/m9.figshare.5936677.v1
title: SO_Strength

description: Static Optimization files for evaluating HYOID model strength
DOI: 10.6084/m9.figshare.5936674
title: MoCap

description: Motion capture data for HYOID models
DOI: 10.6084/m9.figshare.5936674.v1
title: MoCap

description: Motion capture data for HYOID models
DOI: 10.6084/m9.figshare.5936671
title: IK_results

description: Inverse kinematics for HYOID models
DOI: 10.6084/m9.figshare.5936671.v1
title: IK_results

description: Inverse kinematics for HYOID models
DOI: 10.6084/m9.figshare.5936665
title: FWD_JAW

description: Forward simulations for evaluating jaw strength in HYOID models.
DOI: 10.6084/m9.figshare.5936665.v1
title: FWD_JAW

description: Forward simulations for evaluating jaw strength in HYOID models.
DOI: 10.6084/m9.figshare.5936662
title: CMC Files

description: CMC files for HYOID model
DOI: 10.6084/m9.figshare.5936662.v1
title: CMC Files

description: CMC files for HYOID model
DOI: 10.6084/m9.figshare.5936656
title: HYOID OpenSim Model Files

description: Files for HYOID model
DOI: 10.6084/m9.figshare.5936647
title: Geometry

description: This is the data needed to display OpenSim models
DOI: 10.17608/k6.auckland.5936527
title: Putting the Macron in Māori: Accented text in R Graphics

description: This report describes different methods for correctly rendering macrons in Māori text within R plots. The topics covered will also have relevance to rendering other special characters in R graphics and possibly to rendering macrons in other software.
DOI: 10.17608/k6.auckland.5936527.v1
title: Putting the Macron in Māori: Accented text in R Graphics

description: This report describes different methods for correctly rendering macrons in Māori text within R plots. The topics covered will also have relevance to rendering other special characters in R graphics and possibly to rendering macrons in other software.
DOI: 10.6084/m9.figshare.5936296
title: C. carbonarius and T. scripta ventilation

description: Raw data of ventilation and gas exchange of two species of testudines exposed to normoxia, hypoxia and hypercarbia.<br>
DOI: 10.6084/m9.figshare.5936296.v1
title: C. carbonarius and T. scripta ventilation

description: Raw data of ventilation and gas exchange of two species of testudines exposed to normoxia, hypoxia and hypercarbia.<br>
DOI: 10.6084/m9.figshare.5936176
title: Cue Abstraction and Ideal Prototype Abstraction in Estimation Tasks

description: Raw data files from the training phase aand the test phase. <br>
DOI: 10.6084/m9.figshare.5936176.v1
title: Cue Abstraction and Ideal Prototype Abstraction in Estimation Tasks

description: Raw data files from the training phase aand the test phase. <br>
DOI: 10.6084/m9.figshare.5933407
title: S2_Benefits to Fishing and Hunting as Treatment Costs Avoided

description: S2_Explanation_Hunting_Benefit.pdf and S2_Explanation_Fishing_Benefit.pdf explain methods used to calculate recreational benefits and where data and calculations can be found in excel files.<br>S2_FishingBenefitSpatial Analysis_Substitution_BioControl.xlsx and S2_HuntingBenefitSpatialAnalysis_Biocontrol.xlsx contain benefit calculations and data under the control scenario.<br><br>S2_FishingBenefitSpatialAnalysis_Substitution_NoControl.xlsx and S2_HuntingBenefitSpatialAnalysis_Nocontrol.xlsx contain benefit calculations and data under the no control scenario.<br>S2_FishingBiCtrl_subtractedfrom_NoCtrl.xlsx and S2_HuntingBenefit_Ctrl_subtractedfrom_NoCtrl.xlsx contain difference calculations between the biocontrol and no control scenarios.
DOI: 10.6084/m9.figshare.5933407.v1
title: S2_Benefits to Fishing and Hunting as Treatment Costs Avoided

description: S2_Explanation_Hunting_Benefit.pdf and S2_Explanation_Fishing_Benefit.pdf explain methods used to calculate recreational benefits and where data and calculations can be found in excel files.<br>S2_FishingBenefitSpatial Analysis_Substitution_BioControl.xlsx and S2_HuntingBenefitSpatialAnalysis_Biocontrol.xlsx contain benefit calculations and data under the control scenario.<br><br>S2_FishingBenefitSpatialAnalysis_Substitution_NoControl.xlsx and S2_HuntingBenefitSpatialAnalysis_Nocontrol.xlsx contain benefit calculations and data under the no control scenario.<br>S2_FishingBiCtrl_subtractedfrom_NoCtrl.xlsx and S2_HuntingBenefit_Ctrl_subtractedfrom_NoCtrl.xlsx contain difference calculations between the biocontrol and no control scenarios.
DOI: 10.6084/m9.figshare.5933359
title: Effects of oral contraceptives on ovulation induction in <i>in vitro</i> fertilization patients with premature ovarian insufficiency

description: <b>Objective:</b> To report a case series of <i>in vitro</i> fertilization patients with premature ovarian insufficiency, who were treated with oral contraceptives to reduce follicle stimulating hormone levels. <b>Method:</b> This was a consecutive case series in a tertiary teaching hospital in China. Twenty-two women with refractory and idiopathic premature ovarian insufficiency were administered a drospirenone/ethinylestradiol oral contraceptive orally. The main outcome measures were the number of oocytes retrieved and the number of embryos frozen. <b>Results:</b> There were total 106 oral contraceptive treatment cycles and 53 oocyte retrieval cycles in 20 patients (91%, 20/22; 2.4 cycles per woman, 53/22). The total number of oocytes retrieved was 48 in 17 patients (77%, 17/22; 2.2 oocytes per woman, 48/22), and the total number of embryos frozen was 33 in 16 patients (73%, 16/22; 1.5 embryos per woman, 33/22). <b>Conclusion:</b> Oral contraception may be an effective method to induce ovulation for some patients with premature ovarian insufficiency.
DOI: 10.6084/m9.figshare.5933359.v1
title: Effects of oral contraceptives on ovulation induction in <i>in vitro</i> fertilization patients with premature ovarian insufficiency

description: <b>Objective:</b> To report a case series of <i>in vitro</i> fertilization patients with premature ovarian insufficiency, who were treated with oral contraceptives to reduce follicle stimulating hormone levels. <b>Method:</b> This was a consecutive case series in a tertiary teaching hospital in China. Twenty-two women with refractory and idiopathic premature ovarian insufficiency were administered a drospirenone/ethinylestradiol oral contraceptive orally. The main outcome measures were the number of oocytes retrieved and the number of embryos frozen. <b>Results:</b> There were total 106 oral contraceptive treatment cycles and 53 oocyte retrieval cycles in 20 patients (91%, 20/22; 2.4 cycles per woman, 53/22). The total number of oocytes retrieved was 48 in 17 patients (77%, 17/22; 2.2 oocytes per woman, 48/22), and the total number of embryos frozen was 33 in 16 patients (73%, 16/22; 1.5 embryos per woman, 33/22). <b>Conclusion:</b> Oral contraception may be an effective method to induce ovulation for some patients with premature ovarian insufficiency.
DOI: 10.6084/m9.figshare.5933326
title: Non-animal methods to predict skin sensitization (I): the Cosmetics Europe database<sup>*</sup>

description: Cosmetics Europe, the European Trade Association for the cosmetics and personal care industry, is conducting a multi-phase program to develop regulatory accepted, animal-free testing strategies enabling the cosmetics industry to conduct safety assessments. Based on a systematic evaluation of test methods for skin sensitization, five non-animal test methods (DPRA (Direct Peptide Reactivity Assay), KeratinoSens<sup>TM</sup>, h-CLAT (human cell line activation test), U-SENS<sup>TM</sup>, SENS-IS) were selected for inclusion in a comprehensive database of 128 substances. Existing data were compiled and completed with newly generated data, the latter amounting to one-third of all data. The database was complemented with human and local lymph node assay (LLNA) reference data, physicochemical properties and use categories, and thoroughly curated. Focused on the availability of human data, the substance selection resulted nevertheless resulted in a high diversity of chemistries in terms of physico-chemical property ranges and use categories. Predictivities of skin sensitization potential and potency, where applicable, were calculated for the LLNA as compared to human data and for the individual test methods compared to both human and LLNA reference data. In addition, various aspects of applicability of the test methods were analyzed. Due to its high level of curation, comprehensiveness, and completeness, we propose our database as a point of reference for the evaluation and development of testing strategies, as done for example in the associated work of Kleinstreuer et al. We encourage the community to use it to meet the challenge of conducting skin sensitization safety assessment without generating new animal data.
DOI: 10.6084/m9.figshare.5933326.v1
title: Non-animal methods to predict skin sensitization (I): the Cosmetics Europe database<sup>*</sup>

description: Cosmetics Europe, the European Trade Association for the cosmetics and personal care industry, is conducting a multi-phase program to develop regulatory accepted, animal-free testing strategies enabling the cosmetics industry to conduct safety assessments. Based on a systematic evaluation of test methods for skin sensitization, five non-animal test methods (DPRA (Direct Peptide Reactivity Assay), KeratinoSens<sup>TM</sup>, h-CLAT (human cell line activation test), U-SENS<sup>TM</sup>, SENS-IS) were selected for inclusion in a comprehensive database of 128 substances. Existing data were compiled and completed with newly generated data, the latter amounting to one-third of all data. The database was complemented with human and local lymph node assay (LLNA) reference data, physicochemical properties and use categories, and thoroughly curated. Focused on the availability of human data, the substance selection resulted nevertheless resulted in a high diversity of chemistries in terms of physico-chemical property ranges and use categories. Predictivities of skin sensitization potential and potency, where applicable, were calculated for the LLNA as compared to human data and for the individual test methods compared to both human and LLNA reference data. In addition, various aspects of applicability of the test methods were analyzed. Due to its high level of curation, comprehensiveness, and completeness, we propose our database as a point of reference for the evaluation and development of testing strategies, as done for example in the associated work of Kleinstreuer et al. We encourage the community to use it to meet the challenge of conducting skin sensitization safety assessment without generating new animal data.
DOI: 10.6084/m9.figshare.5933323
title: Non-animal methods to predict skin sensitization (II): an assessment of defined approaches<sup>**</sup>

description: Skin sensitization is a toxicity endpoint of widespread concern, for which the mechanistic understanding and concurrent necessity for non-animal testing approaches have evolved to a critical juncture, with many available options for predicting sensitization without using animals. Cosmetics Europe and the National Toxicology Program Interagency Center for the Evaluation of Alternative Toxicological Methods collaborated to analyze the performance of multiple non-animal data integration approaches for the skin sensitization safety assessment of cosmetics ingredients. The Cosmetics Europe Skin Tolerance Task Force (STTF) collected and generated data on 128 substances in multiple <i>in vitro</i> and <i>in chemico</i> skin sensitization assays selected based on a systematic assessment by the STTF. These assays, together with certain <i>in silico</i> predictions, are key components of various non-animal testing strategies that have been submitted to the Organization for Economic Cooperation and Development as case studies for skin sensitization. Curated murine local lymph node assay (LLNA) and human skin sensitization data were used to evaluate the performance of six defined approaches, comprising eight non-animal testing strategies, for both hazard and potency characterization. Defined approaches examined included consensus methods, artificial neural networks, support vector machine models, Bayesian networks, and decision trees, most of which were reproduced using open source software tools. Multiple non-animal testing strategies incorporating <i>in vitro, in chemico</i>, and <i>in silico</i> inputs demonstrated equivalent or superior performance to the LLNA when compared to both animal and human data for skin sensitization.
DOI: 10.6084/m9.figshare.5933323.v2
title: Non-animal methods to predict skin sensitization (II): an assessment of defined approaches<sup>**</sup>

description: Skin sensitization is a toxicity endpoint of widespread concern, for which the mechanistic understanding and concurrent necessity for non-animal testing approaches have evolved to a critical juncture, with many available options for predicting sensitization without using animals. Cosmetics Europe and the National Toxicology Program Interagency Center for the Evaluation of Alternative Toxicological Methods collaborated to analyze the performance of multiple non-animal data integration approaches for the skin sensitization safety assessment of cosmetics ingredients. The Cosmetics Europe Skin Tolerance Task Force (STTF) collected and generated data on 128 substances in multiple <i>in vitro</i> and <i>in chemico</i> skin sensitization assays selected based on a systematic assessment by the STTF. These assays, together with certain <i>in silico</i> predictions, are key components of various non-animal testing strategies that have been submitted to the Organization for Economic Cooperation and Development as case studies for skin sensitization. Curated murine local lymph node assay (LLNA) and human skin sensitization data were used to evaluate the performance of six defined approaches, comprising eight non-animal testing strategies, for both hazard and potency characterization. Defined approaches examined included consensus methods, artificial neural networks, support vector machine models, Bayesian networks, and decision trees, most of which were reproduced using open source software tools. Multiple non-animal testing strategies incorporating <i>in vitro, in chemico</i>, and <i>in silico</i> inputs demonstrated equivalent or superior performance to the LLNA when compared to both animal and human data for skin sensitization.
DOI: 10.6084/m9.figshare.5933323.v1
title: Non-animal methods to predict skin sensitization (II): an assessment of defined approaches<sup>**</sup>

description: Skin sensitization is a toxicity endpoint of widespread concern, for which the mechanistic understanding and concurrent necessity for non-animal testing approaches have evolved to a critical juncture, with many available options for predicting sensitization without using animals. Cosmetics Europe and the National Toxicology Program Interagency Center for the Evaluation of Alternative Toxicological Methods collaborated to analyze the performance of multiple non-animal data integration approaches for the skin sensitization safety assessment of cosmetics ingredients. The Cosmetics Europe Skin Tolerance Task Force (STTF) collected and generated data on 128 substances in multiple <i>in vitro</i> and <i>in chemico</i> skin sensitization assays selected based on a systematic assessment by the STTF. These assays, together with certain <i>in silico</i> predictions, are key components of various non-animal testing strategies that have been submitted to the Organization for Economic Cooperation and Development as case studies for skin sensitization. Curated murine local lymph node assay (LLNA) and human skin sensitization data were used to evaluate the performance of six defined approaches, comprising eight non-animal testing strategies, for both hazard and potency characterization. Defined approaches examined included consensus methods, artificial neural networks, support vector machine models, Bayesian networks, and decision trees, most of which were reproduced using open source software tools. Multiple non-animal testing strategies incorporating <i>in vitro, in chemico</i>, and <i>in silico</i> inputs demonstrated equivalent or superior performance to the LLNA when compared to both animal and human data for skin sensitization.
DOI: 10.6084/m9.figshare.5933299
title: neuron_input_1.hdf5.rar

description: This dataset contains the ion spesific currents for an 80 s run of the Hay model.
DOI: 10.6084/m9.figshare.5933299.v1
title: revdata_neuron_1.hdf5.rar

description: This dataset contains the ion spesific currents for an 80 s run of the Hay model.
DOI: 10.6084/m9.figshare.5933263
title: S3_Benefits to Boat-Dependent Businesses and Drinking Water Treatment Plants as Treatment Costs Avoided

description: S3_Benefits_as_CostsAvoided_Boat_businesses_water_treatment.pdf explains methods used to calculate treatment costs avoided for business entities and where data and calculations can be found in excel files.<br>S3_CostofBioControl_Marinas.xlsx and S3_CostsofBioControl_WaterIntakes.xlsx contain benefit calculations and data under the control scenario.<br>S3_CostofNoControl_Marinas.xlsx and S3_CostsofNoControl_WaterIntakes.xlsx contain benefit calculations and data under the no control scenario.<br>S3_Marinas_NoCtrlsubtractedfromBioCtrl.xlsx and S3_WaterIntakes_NoCtrlsubtractedfromBioCtrl.xlsx contain difference calculations between the control and no control scenarios.
DOI: 10.6084/m9.figshare.5933263.v1
title: S3_Benefits to Boat-Dependent Businesses and Drinking Water Treatment Plants as Treatment Costs Avoided

description: S3_Benefits_as_CostsAvoided_Boat_businesses_water_treatment.pdf explains methods used to calculate treatment costs avoided for business entities and where data and calculations can be found in excel files.<br>S3_CostofBioControl_Marinas.xlsx and S3_CostsofBioControl_WaterIntakes.xlsx contain benefit calculations and data under the control scenario.<br>S3_CostofNoControl_Marinas.xlsx and S3_CostsofNoControl_WaterIntakes.xlsx contain benefit calculations and data under the no control scenario.<br>S3_Marinas_NoCtrlsubtractedfromBioCtrl.xlsx and S3_WaterIntakes_NoCtrlsubtractedfromBioCtrl.xlsx contain difference calculations between the control and no control scenarios.
DOI: 10.6084/m9.figshare.5933230
title: Data-set of size of the co-authorship network and cumulative publications

description: Data-set of size of the co-authorship network and cumulative publications
DOI: 10.6084/m9.figshare.5933206
title: Data-set of size of the faculty and cumulative publications

description: Data-set of size of the faculty and cumulative publications
DOI: 10.6084/m9.figshare.5933206.v1
title: Data-set of size of the faculty and cumulative publications

description: Data-set of size of the faculty and cumulative publications
DOI: 10.6084/m9.figshare.5933176
title: Data-set of scientific publications in Colombian universities during (1965 - 2015)

description: Data of scientific publications in Colombian universities during (1965 - 2015)
DOI: 10.6084/m9.figshare.5933176.v1
title: Data of scientific publications in Colombian universities during (1965 - 2015)

description: Data of scientific publications in Colombian universities during (1965 - 2015)
DOI: 10.6084/m9.figshare.5933173
title: UniversitiesStudied-PLOSONE.xlsx

description: Colombian universties studied
DOI: 10.6084/m9.figshare.5933170
title: Carnivora 16s data

description: the Carnivora gut 16s microbiomes and map file
DOI: 10.6084/m9.figshare.5933170.v1
title: Carnivora 16s data

description: the Carnivora gut 16s microbiomes and map file
DOI: 10.6084/m9.figshare.5933137
title: Dataset for: Structural and genetic analysis of START superfamily protein MSMEG_0129 from <i>Mycobacterium smegmatis</i>

description: <i>Mycobacterium tuberculosis</i>, a notorious pathogen, still threatens human health. Rv0164, an antigen of both T- and B-cells conserved across the mycobacteria, and MSMEG_0129, its close homolog in <i>Mycobacterium smegmatis</i>, are predicted members of the START domain superfamily, but their molecular function is unknown. Here, gene knockout studies demonstrated MSMEG_0129 is essential for bacterial growth, suggesting Rv0164 may be a potential drug target. The MSMEG_0129 crystal structure determined at 1.95 Å reveals a fold similar to that in polyketide aromatase/cyclases ZhuI and TcmN from <i>Streptomyces sp.</i>. Structural comparisons and docking simulations, however, infer that MSMEG_0129 and Rv0164 are unlikely to catalyze polyketide aromatization/cyclization, but probably play an irreplaceable role, for example in lipid transfer, in cell envelope synthesis during mycobacterial growth.