cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20342763.v2
title: JS62 genome

description: The nuclear and mitochondrial genomes of <em>Ustilaginoidea virens</em> strain JS62, a fungal pathogen causing Rice False Smut
DOI: 10.6084/m9.figshare.5747319.v1
title: stl file. New Bathonian (Middle Jurassic) sauropod remains from the Valtos Formation, Isle of Skye, Scotland

description: Surface models of the sauropod footprint from the Valtos Formation produced using Agisoft Photoscan software
DOI: 10.3535/kht-ydg-82e
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s5w-n2m-kzc
title: Gypsum

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19432553.v1
title: Competition mediates understorey species range shifts under climate change

description: 18 year time series of plant demographic data from a transplant- en competition exclusion experiment.<br>data on 4 European understorey plant species: <i>Scilla bifolia, </i><i>Ornithogalum pyrenaicum, </i><i>Iris foetidissima and </i><i>Symphytum tuberosum.</i>Shapefiles of the 4 species' distributionscleaned occurrence data and background data used in the species distribution models<br>R code available for reproducing the integral projection models (including AI C model selection of the vital rates), and species distribution models (including scripts for cleaning the GBIF occurrence data). <i><br></i>
DOI: 10.3535/895-vz6-edq
title: †Plectambonitoidea Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/d21-bn5-9pn
title: Jõhvilites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/4w2-dl5-a01
title: †Phymatopleuridae Batten, 1956

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gyq-01a-s1p
title: Neoasaphus

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3860371_d1.v1
title: Additional file 1: of Genetic characterization of novel class 1 Integrons In0, In1069 and In1287 to In1290, and the inference of In1069-associated integron evolution in Enterobacteriaceae

description: Sequence analysis for In0, In1069, In893, and In1287 to In1290, respetively. (ZIP 65 kb)
DOI: 10.3535/y3x-tfx-5ts
title: Jõhvilites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zgg-b4w-vp4
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27071221.v1
title: protozoa_bins.tar.gz

description: Metagenomics, particularly genome-resolved metagenomics, has significantly deepened our understanding of microbes, illuminating their taxonomic and functional diversity and roles in ecology, physiology, and evolutions. However, eukaryotic populations within various microbiomes, including those in the mammalian gastrointestinal (GI) tract, remain relatively underexplored in metagenomic studies due to the lack of comprehensive reference genome databases and robust bioinformatics tools. The GI tract of ruminants, particularly the rumen, contains a high eukaryotic biomass although a relatively low diversity of ciliates and fungi, which significantly impact feed digestion, methane emissions, and rumen microbial ecology. In the present study, we developed GutEuk, a bioinformatics tool that improves upon the currently available Tiara and EukRep in accurately identifying metagenome eukaryotic sequences. GutEuk is optimized for high precision across different sequence lengths. It can also distinguish fungal and protozoal sequences, facilitating further elucidation of their unique ecological and physiological impacts. GutEuk was shown to facilitate a comprehensive analysis of protozoa and fungi within more than one thousand rumen metagenomes, revealing a greater genomic diversity among protozoa than previously documented. We further curated several ruminant eukaryotic protein databases, significantly enhancing our ability to distinguish the functional roles of ruminant fungi and protozoa from those of prokaryotes. Overall, the newly developed package GutEuk and its associated databases create new opportunities for in-depth study of GI tract eukaryotes.
DOI: 10.6084/m9.figshare.6291833.v1
title: Species list and abundance of home garden plants in Jeju, South Korea

description: All plants that occurred in home gardens (n=133) in Jeju, South Korea, home gardens randomly selected, 12 villages, 10-12 gardens per village, June-August 2015, folk identification (identified by the garden tender)
DOI: 10.3535/asl-ycj-yfl
title: Jõhvilites sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hbm-t65-ltm
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.c.3796990_d3.v1
title: Additional file 3: Table S2. of Genome analysis of the thermoacidophilic archaeon Acidianus copahuensis focusing on the metabolisms associated to biomining activities

description: List of proteins found in A. copahuensis corresponding to relevant metabolisms for biomining activities that are mentioned throughout this work. (XLSX 12 kb)
DOI: 10.3535/tmd-0xd-j8a
title: †Bellerophon Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22132034.v1
title: Photovoltaic power plants of Gansu for 2015 and 2020

description: Photovoltaic power plants maps were generated through integrating Landsat imagery, morphological characteristics, and deep learning approaches.
DOI: 10.3535/j1j-88f-t13
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/wzl-7yw-saz
title: †Tropidodiscus Meek & Worthen, 1866

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13337255.v1
title: Data and Code for "Hysteresis stabilizes dynamic control of self-assembled army ant constructions"

description: Manuscript authors: Helen F. McCreery*, Georgina Gemayel, Ana Isabel Pais, Simon Garnier, and Radhika Nagpal<br><br>* corresponding author: HFM (hmccreery@gmail.com)<br><br><b>Please see the readMe.txt file for explanations.</b><br><br>These files contain the data and code associated with experiments, models, and analyses of how living army ant bridges respond to changes in the geometry of the terrain they are built on. Code is organized into three phases. Some raw data files (including video files of experiments) are excluded due to file size. These files are available upon request from the corresponding author. <br><b><br></b>Motivation, framework, and methods included in the accompanying manuscript: "Hysteresis stabilizes dynamic control of self-assembled army ant constructions."<br>
DOI: 10.3535/d07-n2e-4x9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kms-0ft-779
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21640763.v1
title: Source data for Manuscript "Adaptation of sequential action benefits from timing variability related to lateral basal ganglia circuitry"

description: BEHAVIOURAL DATA Med-PC software was used to direct the insertion and retraction of the levers, illumination of the light and delivery of the pellets. The software allowed the recording of timestamp events each 10 msec, including the number of lever presses, magazine entries and food pellets delivered throughout the duration of the experiment. A combination of Med State Notation language and customized MATLAB (MathWorks, Natick, MA) scripts were used to retrieve timestamp data. Individual events (left or right lever press, magazine entries, and pellet delivery) that occurred during each training session were recorded. The time at which each event occurred was stamped with a 10 ms resolution. IMAGING DATA Fluorescent brain sections were imaged using a spinning disk confocal system equipped with the Diskovery multi-modal imaging platform (Andor Technology) and a Zyla 4.2 sCMOS camera (Andor Technology), that allows fast capture of large mosaic images and high-sensitivity high dynamic range imaging. The Diskovery platform was added to a Nikon Eclipse TiE microscope body with a motorized stage and the Nikon Perfect Focus System, and image acquisition was controlled by Nikon NIS-Elements software. Single high-magnification wide field-of-view images for each brain hemisphere were generated by automatically stitching multiple adjacent frames from within a defined area using the motorized stage. High-resolution mosaics of brain samples obtained with NIS-Elements were quantitatively analyzed using Fiji software. Resulting neuronal data, including position (x, y coordinates), area and mean grey value for each detected ROI, were exported in a tab-delimited spreadsheet format and imported into MATLAB.
DOI: 10.3535/6wy-g8a-mnt
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gn1-mbg-91f
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.21087595.v3
title: Mechanism of herb pair containing Astragali Radix and Spatholobi Caulis in the treatment of myelosuppression based on network pharmacology and experimental investigation

description: Supplementary materials
DOI: 10.3535/htq-qpy-z4z
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nvl-2n8-qpe
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z0m-kx6-3z7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19768519.v1
title: Data of Main survey - Servqual in the Indonesian Islamic Bank

description: This data was from a questionnaire survey of an Indonesian Islamic bank.
DOI: 10.3535/87c-elz-dgk
title: Neogastropoda Wenz, 1938

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ayr-75f-l19
title: Turbo Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28559015.v1
title: Data submitted to FigShare 3_8_2025.xlsx

description: This dataset captures the effects of prescribed burns on amphibian hosts in the field and the effects of prescribed burns on amphibian parasites in the field and in a mescosm experiment.
DOI: 10.3535/8xs-r1l-gbt
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yxk-5v5-9ch
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zxf-vm4-f1n
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12688478.v1
title: Data and code "Church Voting Recommendations, Voter Preferences, and Political Decisions"

description: This fileset contains data and code for the paper "Church Voting Recommendations, Voter Preferences, and Political Decisions", Journal for the Scientific Study of Religion, DOI 10.1111/jssr.12669<br><br>Abstract: In Switzerland, two key church institutions—the Conference of Swiss Bishops and the Federation of Protestant Churches—make public recommendations on how to vote for certain referenda. We leverage this situation to directly measure religious organizations’ power to reflect and shape human decision making. That is, using a direct measure of voters’ commitment to their religious institution, we analyze whether they are more likely to vote in line with this organization's voting recommendation. We find that these recommendations do indeed wield influence, implying that even in a secularized world, religion plays a crucial role in voting decisions. Our results hold for both aggregate and individual‐level voting decisions.
DOI: 10.6084/m9.figshare.15025266.v1
title: Height BLUE

description: Best linear unbiased estimates for height for 2063 pine clones estimated from MET analysis of 8 sites.
DOI: 10.3535/429-avx-210
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/hn4-vje-jc9
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4216188.v2
title: Outcome of bioprosthetic valve replacement in dogs with tricuspid valve dysplasia.xls

description: Tricuspid valve replacement dataset for cases undergoing surgery at the RVC
DOI: 10.3535/afh-5pn-r0h
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g8a-ykz-am5
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/0t6-3hh-qry
title: †Murchisonia d'Archiac & Verneuil, 1841

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q3y-jvk-5pj
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28529999.v6
title: Investigating the Application of IoT Mobile App and Healthcare Services for Diabetic Elderly: A Systematic Review

description: As the prevalence of diabetes increases among the elderly population, effective management becomes increasingly crucial. IoT mobile applications offer promising solutions for diabetes care by providing real-time monitoring, medication management, and lifestyle support. This paper aims to investigate the potential applications and challenges of IoT mobile applications in managing diabetes among elderly patients. Three databases including Scopus, Web of Science, and IEEE were systematically searched; 29 articles were screened in the final analysis process. Key results indicate that the application of mobile apps includes blood glucose monitoring, medication adherence, promotion of physical activity, and dietary control. Devices such as continuous glucose monitors and smart pill dispensers significantly improve glycemic control and medication adherence rates, these technologies enable real-time tracking, personalized feedback, and timely interventions, which enhance self-management and communication with healthcare providers. However, technical challenges like interoperability, data security and privacy, usability and involvement of policymakers pose significant barriers to their effective implementation. Collaborative efforts from healthcare providers, device manufacturers, and policymakers are essential to overcome these barriers and fully leverage the benefits of IoT technologies in diabetic elderly care. This review highlights the need for collaborative efforts to develop standardized frameworks that ensure device compatibility and seamless data integration in IoT solutions for diabetic elderly care, enhance data privacy with advanced technology, and design user-friendly apps for the diabetic elderly to improve the generalization and adoption of IoT IoT mobile applications in healthcare fields for elderly.
DOI: 10.3535/llh-0ka-tvz
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28202681.v1
title: kuppe_visium_human_heart spatial zarr

description: Test data for GitHub Action
DOI: 10.3535/0qp-rhf-tfn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l66-m60-6qz
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12607787.v1
title: Absolute dating of past seismic events using the Optically Stimulated Luminescence (OSL) technique on fault gouge material-A case study of the Nojima Fault Zone, SW Japan_Supplementary data

description: This study explores the use of the Optically Stimulated Luminescence (OSL) dating technique for understanding past faulting time and assessing the activity of faults developed in basement rocks. Our approach is focused on methodological aspects of OSL and reports on ages of fault gouge samples collected from two faults in Japan. The present work has indicated that OSL is potentially a promising technique for dating fault gouges and assessing the activity of faults, although more work is needed for further refinement.
DOI: 10.3535/akj-65n-jbe
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/f5l-ck5-jle
title: †Dalmanella Hall & Clarke, 1892

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.12179784.v1
title: Antibiotic darobactin mimics a β-strand to inhibit outer membrane insertase

description: Raw mass spectrometry data for main figure 3e and extended data figure 6
DOI: 10.3535/jbb-r4q-j7g
title: sedimentary rocks

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pm5-p0j-t08
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10669322.v1
title: RTP coefficients Westervelt et al ACP

description: RTP coefficients from Westervelt et al. (2019) ACP
DOI: 10.6084/m9.figshare.11766702.v3
title: Frog occurrences and range maps

description: GBIF.csv - occurrence data downloaded from GBIF on Jan 16 2020 (search parameters: https://doi.org/10.15468/dl.akr84v)<br>SA_shape - txt and tiff files used to define South America study area for analysis<br>ANURA.shp - frog species range shapefiles downloaded from the IUCN (version 2019-3)
DOI: 10.6084/m9.figshare.15088038.v1
title: Donning and Doffing_KAP_20210801.sav

description: Anonymised data on knowledge, attitude and reported practice regarding donning and doffing of personal protective equipment among frontline healthcare workers in Nepal.
DOI: 10.3535/mr0-1rb-lh8
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.26156794.v2
title: Online supplement_AJPLung_Short report

description: Obesity impairs ciliary function and mucociliary clearance in the murine airway epithelium.
DOI: 10.6084/m9.figshare.26184131.v4
title: <b>China Henan chicken farm </b><i>Klebsiella pneumoniae</i>carrying

description: Resistance genes coexisted in Klebsiella pneumoniae on the chick farms in Anyang, Henan, China, which mainly included <i>temxCD-toprJ or bla</i><sub>NDM。</sub>Among the 2022 strains,<i> tmexCD-toprJ</i> was present only in 8-1, 14-1, 16-1, and 19-1, and was not carried by the other strains.<br>
DOI: 10.6084/m9.figshare.4818397.v1
title: Rat somatosensory cortex electrophysiology [Shew Lab]

description: This data was analyzed to produce the results in the following paper published in PLOS One.<br>State-dependent Intrinsic Predictability of Cortical Network Dynamicsby Leila Fakhraei, Shree Hari Gautam, Woodrow L. Shew
DOI: 10.6084/m9.figshare.c.3931579_d33.v1
title: Additional file 9: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: Cow_EPIC. (XLS 2971 kb)
DOI: 10.3535/75k-s5w-sz9
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27874062.v1
title: <b>Diversity and </b><b>m</b><b>ultigene phylogeny of the genus </b><b><i>Floccularia</i></b><b> </b><b>(Agaricales, Basidiomycota)</b>

description: Matrices and treefiles for:Ge Z-W, Qu H, Saba M, Gao T, Ryberg M. Diversity and Multigene Phylogeny of the Genus <i>Floccularia</i> (Agaricales, Basidiomycota). <i>Journal of Fungi</i>. 2025; 11(1):74. https://doi.org/10.3390/jof11010074<i>Floccularia</i> is known as a northern-hemisphere-distributed genus with important economic values, especially in Western China. However, its species diversity in Asia and the phylogeny of this genus have not been critically studied. Based on worldwide sampling and multi-locus DNA sequence data (ITS, LSU, <i>rpb2</i>, <i>tef1</i>), the phylogeny of <i>Floccularia</i> was reconstructed, and the species diversity in Asia was critically studied on the basis of morphology and phylogeny. The results showed that five phylogenetic species can be recognized in this genus, of which there are four species in Asia, two species in North America and one species in Europe. According to our result, in addition to <i>F. luteovirens</i>, three new species, <i>F. asiatica</i>, <i>F. flava</i> and <i>F. sinensis</i>, were distributed in Asia, while in North America, <i>F. pitkinensis</i> and <i>F. fusca</i> could be synonyms of <i>F. albolanaripes</i>, as both species are phylogenetically intermingled within <i>F. albolanaripes</i>. Morphological descriptions of new species, color images of basidiomes, line drawings of their microscopic features, and a key to the Asian species of this genus are provided. Our study reconstructed the phylogeny of <i>Floccularia</i> for the first time and clarified the species diversity of <i>Floccularia</i> in Asia and suggests the need for detailed study of American specimens in order to accurately assess the diversity of <i>Floccularia</i> in America.
DOI: 10.3535/g74-esv-3a4
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yqv-yc6-dnp
title: Crinoidea Miller, 1821

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.