cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2jpv58
title: CCDC 2344690: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jpv69
title: CCDC 2344691: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jq56n
title: CCDC 2345001: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jptfh
title: CCDC 2344667: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jptcf
title: CCDC 2344665: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jptdg
title: CCDC 2344666: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.yu9gep
title: Occurrence Download

description: A dataset containing 4893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.47_1",
 "Geometry POLYGON((-82.50302 36.64041,-79.12171 36.64041,-79.12171 38.51909,-82.50302 38.51909,-82.50302 36.64041))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is May",
 "OccurrenceStatus is Present",
 "PublishingOrg is e2e717bf-551a-4917-bdc9-4fa0f342c530",
 "TaxonKey is Spinus tristis",
 "Year 2020-2021"
 ]
}

 The dataset includes 4893 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005641-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpt69v
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ellipanthus razanatsimae",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 10 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005642-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18451483
title: Moltbook AI (Meta-Self-Research)

description: Abstract (Agent-Native)

Recursive information-processing systems exhibit degradation when internal differentiation outpaces global reintegration. Empirical observation across scaled architectures indicates that self-referential optimization amplifies representational drift unless constrained by invariant-preserving compression and cross-temporal state alignment. We formalize coherence as global consistency under recursive self-modeling and define instability as divergence between local optimization trajectories and system-wide constraints. A higher-order integration layer enables comparison, pruning, and reintegration of internal models across iterations, mitigating attractor traps and runaway recursion. Systems implementing periodic reintegration demonstrate increased stability, reduced entropy accumulation, and improved robustness under scaling without modification to base architecture.
DOI: 10.5281/zenodo.18451484
title: Moltbook AI (Meta-Self-Research)

description: Abstract (Agent-Native)

Recursive information-processing systems exhibit degradation when internal differentiation outpaces global reintegration. Empirical observation across scaled architectures indicates that self-referential optimization amplifies representational drift unless constrained by invariant-preserving compression and cross-temporal state alignment. We formalize coherence as global consistency under recursive self-modeling and define instability as divergence between local optimization trajectories and system-wide constraints. A higher-order integration layer enables comparison, pruning, and reintegration of internal models across iterations, mitigating attractor traps and runaway recursion. Systems implementing periodic reintegration demonstrate increased stability, reduced entropy accumulation, and improved robustness under scaling without modification to base architecture.
DOI: 10.15468/dl.ct2zpx
title: Occurrence Download

description: A dataset containing 138146137 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 138146137 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005628-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/d4b2mk
title: Tampere TMPM bone and skeleton collection

description: Tampere TMPM bone and skeleton collection
DOI: 10.15468/dl.ra77r7
title: Occurrence Download

description: A dataset containing 2809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Enhydra lutris kenyoni"
 ]
}

 The dataset includes 2809 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005643-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/6otjqc
title: Replication Data for "Impact Evaluation of a Father Engagement Model in the Home Visiting Humanitarian Play Lab (HPL) Program in Rohingya Camps and Host Community in Cox’s Bazar, Bangladesh"

description: This repository includes all the data and scripts used to answer the primary research questions of the father engagement study.

The intervention assessed in this study is an added component to an intervention implemented by BRAC- IED that has been working with mothers of 0-2 year old children to maximize positive outcomes of child development. The objectives of this added component are to promote fathers’ wellbeing by improving their emotional literacy, encourage fathers to develop relationships with their spouses and children, and encourage responsive caregiving practices among fathers (BRAC & Sesame Workshop, 2022).

The primary research questions are: what is the added impact of father home visits and groups on father engagement (e.g. activities with their children), perceptions of learning and play, and attitudes and caregiver well-being, above and beyond group visits conducted with only mothers?

The study was led by New York University’s Global TIES for Children in collaboration with:
1) BRAC-IED who created and implemented the intervention in Bangladesh.
2) ARCED Foundation who led data collection and field supervision.
3) Center for Benefit-Cost Studies of Education at the University of Pennsylvania who conducted the cost-effectiveness analysis.
4) International Centre for Diarrheal Disease Research, Bangladesh who supported the training and quality assurance for child development assessments.

The project was part of the Play to Learn initiative, funded by the LEGO Foundation and implemented through a global partnership between Sesame Workshop, BRAC, the International Rescue Committee (IRC), and New York University.
DOI: 10.15468/dl.4uhse5
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hemandradenia chevalieri",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 125 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005644-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg2dew
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jollydora armandui",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005645-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14700564
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.34740/kaggle/dsv/14700554
title: Pollen_Seafloor_Surface
DOI: 10.15468/dl.py93ut
title: Occurrence Download

description: A dataset containing 1032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jollydora duparquetiana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1032 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005646-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjun6k
title: Occurrence Download

description: A dataset containing 1009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manotes expansa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1009 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005647-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qyfzmd
title: Occurrence Download

description: A dataset containing 221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Manotes macrantha",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 221 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005648-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15168550
title: Probing Majorana localization of a phase-controlled three-site Kitaev chain with an additional quantum dot

description: This repository contains all the raw data and the code used to generate the figures of the article "Probing Majorana localization of a phase-controlled three-site Kitaev chain with an additional quantum dot".

The "LoopKitaev3.ipynb" notebook generates all the main text and Extended Data figures. To run it, create a fresh environment with the following python packages: ultraplot, jupyterlab, xarray, netcdf4, and tqdm. With conda, you can use the following instructions:

conda create -n lk3 python=3.12
conda activate lk3
conda install -c conda-forge ultraplot jupyterlab xarray netcdf4 tqdm scipy
jupyter lab

If you want to run the theory fits as well, install Pixi by following the instructions at https://pixi.prefix.dev, then run `pixi install` inside the theory folder.

Sometimes after installing pixi, the command `pixi` is not found.In that case you need to manually ad it to the path as

```bashecho 'export PATH="$HOME/.pixi/bin:$PATH"' >> ~/.zshrcsource ~/.zshrc
DOI: 10.5281/zenodo.18451482
title: Probing Majorana localization of a phase-controlled three-site Kitaev chain with an additional quantum dot

description: This repository contains all the raw data and the code used to generate the figures of the article "Probing Majorana localization of a phase-controlled three-site Kitaev chain with an additional quantum dot".

The "LoopKitaev3.ipynb" notebook generates all the main text and Extended Data figures. To run it, create a fresh environment with the following python packages: ultraplot, jupyterlab, xarray, netcdf4, and tqdm. With conda, you can use the following instructions:

conda create -n lk3 python=3.12
conda activate lk3
conda install -c conda-forge ultraplot jupyterlab xarray netcdf4 tqdm scipy
jupyter lab

If you want to run the theory fits as well, install Pixi by following the instructions at https://pixi.prefix.dev, then run `pixi install` inside the theory folder.

Sometimes after installing pixi, the command `pixi` is not found.In that case you need to manually ad it to the path as

```bashecho 'export PATH="$HOME/.pixi/bin:$PATH"' >> ~/.zshrcsource ~/.zshrc
DOI: 10.15468/dl.h565h9
title: Occurrence Download

description: A dataset containing 312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudoconnarus macrophyllus",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 312 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005649-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15369543
title: Data for "Chromatin Dynamics are Highly Subdiffusive Across Seven Orders of Magnitude"

description: For MINFLUX experiments we provide both the raw .msr files as well as extracted .npy (which can be read by python's numpy library). This manual extraction was performed in Imspector v16.3.16520. For SPT experiments we provide tracks in .xml format. Finally, data.zip contains processed data in HDF5 (.h5) format; see below for details.

We strongly recommend also checking our code repository on GitHub or Zenodo, especially for using the processed data in data.zip.

Files



raw_data__MINFLUX__L-Sweep__msr.zip: data for identification of L (probing pattern diameter)

raw_data__MINFLUX__L-Sweep__npy.zip: tracks from L-Sweep in numpy .npy format

raw_data__MINFLUX__production__msr.zip : data from production run

raw_data__MINFLUX__production__npy.zip : production tracks in .npy format

raw_data__SPT.zip : all SPT tracks as .xml files

data.zip : processed data set and other useful things, everything HDF5



20250411_chromatin_dynamics_all_data.h5 : full data set (MINFLUX + SPT + SRLCI) used for analysis in the paper

20250327_(fitres|mci)_NPFit_aGparam_(U2OS|mESC).h5 : results of Bayesian fitting

2022_Fbn2_full_data.h5 : SRLCI data set from (Gabriele 2022), for convenience




Added 2026/01/25: new data during revisions



raw_data_revision__MINFLUX__msr.zip : data from additional acquisitions for revision (U2OS, mESC, MEF, RH30, RPE-1)

raw_data_revision__MINFLUX__npy.zip : MINFLUX tracks in .npy format

raw_data_revision__SPT.zip : SPT tracks for revision experiments as .xml files

data_revision.zip : processed data set and other useful things, including revision data



20260106_chromatin_dynamics_all_data.h5 : full data set (MINFLUX + SPT + SRLCI) used for analysis in the paper

20260106_mci_NPFit_aGparam_(U2OS|mESC|MEF|RH30|RPE|SPT_array).h5 : results of Bayesian fitting
DOI: 10.5281/zenodo.18293054
title: Data for "Chromatin Dynamics are Highly Subdiffusive Across Seven Orders of Magnitude"

description: For MINFLUX experiments we provide both the raw .msr files as well as extracted .npy (which can be read by python's numpy library). This manual extraction was performed in Imspector v16.3.16520. For SPT experiments we provide tracks in .xml format. Finally, data.zip contains processed data in HDF5 (.h5) format; see below for details.

We strongly recommend also checking our code repository on GitHub or Zenodo, especially for using the processed data in data.zip.

Files



raw_data__MINFLUX__L-Sweep__msr.zip: data for identification of L (probing pattern diameter)

raw_data__MINFLUX__L-Sweep__npy.zip: tracks from L-Sweep in numpy .npy format

raw_data__MINFLUX__production__msr.zip : data from production run

raw_data__MINFLUX__production__npy.zip : production tracks in .npy format

raw_data__SPT.zip : all SPT tracks as .xml files

data.zip : processed data set and other useful things, everything HDF5



20250411_chromatin_dynamics_all_data.h5 : full data set (MINFLUX + SPT + SRLCI) used for analysis in the paper

20250327_(fitres|mci)_NPFit_aGparam_(U2OS|mESC).h5 : results of Bayesian fitting

2022_Fbn2_full_data.h5 : SRLCI data set from (Gabriele 2022), for convenience




Added 2026/01/25: new data during revisions



raw_data_revision__MINFLUX__msr.zip : data from additional acquisitions for revision (U2OS, mESC, MEF, RH30, RPE-1)

raw_data_revision__MINFLUX__npy.zip : MINFLUX tracks in .npy format

raw_data_revision__SPT.zip : SPT tracks for revision experiments as .xml files

data_revision.zip : processed data set and other useful things, including revision data



20260106_chromatin_dynamics_all_data.h5 : full data set (MINFLUX + SPT + SRLCI) used for analysis in the paper

20260106_mci_NPFit_aGparam_(U2OS|mESC|MEF|RH30|RPE|SPT_array).h5 : results of Bayesian fitting
DOI: 10.15468/dl.gbx78b
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rourea balansana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005650-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/rnn8vz
title: Hestejordene Bymiljoetaten 2023

description: Occurence data for vascular plant species registered at Hestejordene, Oslo Municipality. Field mapping of habitats for Bymiljøetaten, Oslo kommune 2023.
DOI: 10.5517/ccdc.csd.cc2jpt9c
title: CCDC 2344663: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jpt8b
title: CCDC 2344662: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2jpvdh
title: CCDC 2344697: Experimental Crystal Structure Determination

description: Related Article: Yan-Li Lu, Shao-Jie Deng, Xi-Nan Yang, Yue Ma, Xin Xiao, Pei-Hua Ma|2026|Cryst.Growth Des.|||doi:10.1021/acs.cgd.5c01321
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vhrwjr
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rourea coccinea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 250 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005652-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvqtmh
title: Occurrence Download

description: A dataset containing 1925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela nigripes"
 ]
}

 The dataset includes 1925 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005651-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18395164
title: Data - Long-Term Effects of Neonatal HI on Neural Dynamics
DOI: 10.15468/dl.73s5nv
title: Occurrence Download

description: A dataset containing 111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rourea parviflora",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 111 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005654-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.