cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.844716.v8
title: Panama fungal phyllosphere sequences

description: Fungal LSU sequence data (primers LR0R/LR3) and metadata for fungal communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities" by Steven Kembel and Rebecca Mueller (manuscript in press at Botany). Multiple sets of files are included in this data archive: <strong>fungi_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>fungi1.fastq.tgz.part-xx</strong><br><strong>fungi2.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by two sequencing runs using Illumina MiSeq 250bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following commands work in a Linux/Unix environment: cat fungi1.fastq.tgz.part-* | tar xz<br>cat fungi2.fastq.tgz.part-* | tar xz
DOI: 10.6084/m9.figshare.843622.v1
title: Data for: Cooperating to compete: altruism, sexual selection and causes of male reproductive cooperation

description: This figshare package includes data and code for the paper: Cooperating to compete: altruism, sexual selection and causes of male reproductive cooperation Samuel L. Díaz-Muñoz, Emily H. DuVal, Alan H. Krakauer, Eileen A. Lacey<br>Animal Behaviour (2014) 88, 67–78. doi:10.1016/j.anbehav.2013.11.008 The review article defines male reproductive cooperation among animals and proposes categories for different types of mal-male cooperation. The data are the result of a literature search detailed in the paper. If you use these data and code, please cite the article above and the figshare doi.
DOI: 10.6084/m9.figshare.843626.v2
title: Reputation of Medical Treatments: Dataset and analysis files

description: Dataset and analysis code for forthcoming 2014 article in Journal of Medical Internet Research
DOI: 10.6084/m9.figshare.844716.v7
title: Panama fungal phyllosphere sequences

description: Fungal LSU sequence data (primers LR0R/LR3) and metadata for fungal communities sampled from plant leaf surfaces on Barro Colorado Island, Panama. Data collection procedures are described in the paper "Plant traits and taxonomy drive host associations in tropical phyllosphere fungal communities" by Steven Kembel and Rebecca Mueller (manuscript in review at Botany). Multiple sets of files are included in this data archive: <strong>fungi_phyllosphere_metadata.txt</strong> - a tab-delimited text file with information on barcode sequences and host species identity for each sample. The columns of the text file include a sample identifier (SampleID), forward and reverse barcode sequences* (ForwardBarcodeSequence and ReverseBarcodeSequence), and the identity of the host plant species from which each sample was collected (HostSpecies). * note that in the raw sequence data, a combinatorial or dual-index barcoding approach was used to uniquely identify samples. The first 6bp of the barcode are on the forward read, and the final 6bp of the barcode are on the reverse read. The barcodes will need to be combined into a single 12bp construct prior to parsing into samples, or parsed with software capable of processing dual-indexed sequences. <strong>fungi1.fastq.tgz.part-xx</strong><br><strong>fungi2.fastq.tgz.part-xx</strong> - raw sequence data in FASTQ format, produced by two sequencing runs using Illumina MiSeq 250bp paired-end sequencing technology. Due to file size limitations, the original tar/gzip archives have been split into multiple parts. To recombine and uncompress the sequence files, the following commands work in a Linux/Unix environment: cat fungi1.fastq.tgz.part-* | tar xz<br>cat fungi2.fastq.tgz.part-* | tar xz
DOI: 10.6084/m9.figshare.843615.v1
title: Sugarbeet transcriptome unigenes

description: Unigenes assembled from RNA-seq of sugarbeet leaf and root tissues. Full description of research is available in manuscript, "Generation and characterization of a sugarbeet (<em>Beta vulgaris</em> L.) transcriptome and transcript-based SSR markers," by KK Fugate, D Fajardo, B Schlautman, JP Ferrareze, MD Bolton, LG Campbell, E Wiesman, and J. Zalapa, <em>The Plant Genome</em>.<strong></strong>
DOI: 10.6084/m9.figshare.843604
title: Gaussian Job Archive for C13H26LiNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.843614
title: Sugarbeet transcriptome, unigenes, sequence direction

description: Unigenes for which 5' to 3' sequence direction was determined. Unigenes assembled from RNA-seq of sugarbeet leaf and root tissues. Full description of research is available in manuscript, "Generation and characterization of a sugarbeet (<em>Beta vulgaris</em> L.) transcriptome and transcript-based SSR markers," by KK Fugate, D Fajardo, B Schlautman, JP Ferrareze, MD Bolton, LG Campbell, E Wiesman, and J. Zalapa, <em>The Plant Genome</em>.
DOI: 10.6084/m9.figshare.843614.v1
title: Sugarbeet transcriptome, unigenes, sequence direction

description: Unigenes for which 5' to 3' sequence direction was determined. Unigenes assembled from RNA-seq of sugarbeet leaf and root tissues. Full description of research is available in manuscript, "Generation and characterization of a sugarbeet (<em>Beta vulgaris</em> L.) transcriptome and transcript-based SSR markers," by KK Fugate, D Fajardo, B Schlautman, JP Ferrareze, MD Bolton, LG Campbell, E Wiesman, and J. Zalapa, <em>The Plant Genome</em>.
DOI: 10.6084/m9.figshare.843604.v1
title: Gaussian Job Archive for C13H26LiNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.843615.v2
title: Sugarbeet transcriptome unigenes

description: Unigenes assembled from RNA-seq of sugarbeet leaf and root tissues. Full description of research is available in manuscript, "Generation and characterization of a sugarbeet (<em>Beta vulgaris</em> L.) transcriptome and transcript-based SSR markers," by KK Fugate, D Fajardo, B Schlautman, JP Ferrareze, MD Bolton, LG Campbell, E Wiesman, and J. Zalapa, <em>The Plant Genome</em>.<strong></strong>
DOI: 10.6084/m9.figshare.842705
title: Wing clip data

description: The data sets and SAS code needed to generate the analyses presented in Hamm et al. 2010. Evaluating the impact of non-lethal DNA sampling on two butterflies, Vanessa cardui and Satyrodes eurydice. Journal of Insect Conservation 14(1): 11-18. doi: 10.1007/s10841-009-9219-0
DOI: 10.6084/m9.figshare.842706
title: Structures of substituted iminoboranes

description: These are the structures of substituted iminoboranes published in DOI: 10.1016/j.comptc.2011.04.010 Please cite also the paper if you use any of this structures.
DOI: 10.6084/m9.figshare.842706.v1
title: Structures of substituted iminoboranes

description: These are the structures of substituted iminoboranes published in DOI: 10.1016/j.comptc.2011.04.010 Please cite also the paper if you use any of this structures.
DOI: 10.6084/m9.figshare.842705.v1
title: Wing clip data

description: The data sets and SAS code needed to generate the analyses presented in Hamm et al. 2010. Evaluating the impact of non-lethal DNA sampling on two butterflies, Vanessa cardui and Satyrodes eurydice. Journal of Insect Conservation 14(1): 11-18. doi: 10.1007/s10841-009-9219-0
DOI: 10.6084/m9.figshare.842699
title: Tapinoma sessile and T. schriberi data and code

description: The data and R code needed to conduct the analyses presented in: <br>Hamm, CA 2010. Multivariate discrimination and description of a new species of Tapinoma from the western United States. Annals of the Entomological Society of America 103 (1): 20-29. doi: 10.1603/008.103.0104
DOI: 10.6084/m9.figshare.843607.v1
title: Palmeiras Andinas e Camponeses na Floresta de Nuvens em Florencia, Caquetá, Colombia

description: Presentado en el 63 Congreso Nacional de Botánica de Brasil, realizado en 2012 en Fortaleza, CE.
DOI: 10.6084/m9.figshare.842692
title: Conformations of six-membered ring phosphorinanes

description: These are the structures reported in: Rosas-Garcia, Victor M., Susana T. Lopez-Cortina, y Ariadna Chavarria-Resendez. «A computational study of axial vs. equatorial preferences of phenyl-substituted phosphorinane oxides». Journal of Molecular Structure: THEOCHEM 958, n.o 1-3 (30 de octubre de 2010): 133-136. doi:10.1016/j.theochem.2010.07.039.
DOI: 10.6084/m9.figshare.842699.v1
title: Tapinoma sessile and T. schriberi

description: The data and R code needed to conduct the analyses presented in: <br>Hamm, CA 2010. Multivariate discrimination and description of a new species of Tapinoma from the western United States. Annals of the Entomological Society of America 103 (1): 20-29. doi: 10.1603/008.103.0104
DOI: 10.6084/m9.figshare.842692.v1
title: Conformations of six-membered ring phosphorinanes

description: These are the structures reported in: Rosas-Garcia, Victor M., Susana T. Lopez-Cortina, y Ariadna Chavarria-Resendez. «A computational study of axial vs. equatorial preferences of phenyl-substituted phosphorinane oxides». Journal of Molecular Structure: THEOCHEM 958, n.o 1-3 (30 de octubre de 2010): 133-136. doi:10.1016/j.theochem.2010.07.039.
DOI: 10.6084/m9.figshare.842699.v2
title: Tapinoma sessile and T. schriberi data

description: The data and R code needed to conduct the analyses presented in: <br>Hamm, CA 2010. Multivariate discrimination and description of a new species of Tapinoma from the western United States. Annals of the Entomological Society of America 103 (1): 20-29. doi: 10.1603/008.103.0104
DOI: 10.6084/m9.figshare.842633
title: HitCompanies Dataset

description: Worldwide Companies Dataset contains information on random 10,000 worldwide companies, including name, registration number, website url, addresses, phone numbers, industry codes, aliases, associated domain names and key changes such as people changes, contact changes, etc.<br><br>Original data available at http://endb-consolidated.aihit.com/datasets.htm
DOI: 10.6084/m9.figshare.842572.v1
title: Gaussian Job Archive for C13H26LiNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841757.v1
title: Gaussian Job Archive for C13H26LiNO

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841756
title: Blois-ETE_base_data

description: These data represent the base files for the paper: Blois, Jessica L., Gotelli, Nicholas J., Behrensmeyer, Anna K., Faith, J. Tyler, Lyons, S. Kathleen, Williams, John W., Amatangelo, Kathryn L, Bercovici, Antoine, Du, Andrew, Eronen, Jussi T., Graves, Gary R., Jud, Nathan, Labandeira, Conrad, Looy, Cynthia, McGill, Brian, Patterson, David, Potts, Richard, Riddle, Brett, Terry, Rebecca, Tóth, Anikó, Villaseñor, Amelia and Wing, Scott (2014). A framework for evaluating the influence of climate, dispersal limitation, and biotic interactions using fossil pollen species associations across the late Quaternary. Ecography 37: 1095-1108. doi: 10.1111/ecog.00779 submitted to Ecography 5 November 2013, accepted 11 May 2014, published 31 October 2014 Included are a README.txt file, 22 csv files representing the fossil pollen relative abundances for each site from time slices at every thousand years from 21 to 0 thousand calibrated years before present, and the environmental characteristics of each site at each time period.
DOI: 10.6084/m9.figshare.841755
title: Spatial Networks for Archaeology

description: Slides for an invited talk given at the workshop on "Networks over space and time: modelling, analyzing, and representing complex data in the digital humanities", on 8th November 2013 at FCSH, Universidade Nova de Lisboa, Lisbon, Portugal. (WG1, Spatial and temporal modelling: representation of space and time, NeDiMAH).
DOI: 10.6084/m9.figshare.841754
title: Moving Group Candidates Estimated Mass Function

description: These plots show histograms of the mass estimates of <em>bona fide</em> members and candidates members of all young moving groups including TW Hydrae, Beta Pictoris, Tucana-Horologium, Carina, Columba, Argus and AB Doradus. Green bars are <em>bona fide</em> members, yellow bars represent a log-normal IMF consistent with the current number of <em>bona fide</em> members, red bars are candidate members from Gagné et al. (in prep.), purple bars are candidates members for which youth was confirmed (Gagné et al. in prep. and Gagné et al. 2013, submitted to ApJ). Fuschia bars are candidate members from Malo et al. (2013) and Malo et al. (2014, submitted to ApJ). Masses were estimated by comparing absolute magnitudes computer from Bayesian statistical distance predictions with AMES-COND isochrones (Baraffe et al. 2003) in combination with CIFIST2011 BT-SETTL atmosphere models (Allard et al. 2013, Rajpurohit et al. 2013) in a likelihood analysis (See Gagné et al. 2013, submitted to ApJ for more information). All files are available in PDF and EPS formats. Please cite the article below (see link) if you use these figures.
DOI: 10.6084/m9.figshare.841756.v1
title: Blois-ETE_base_data

description: These data represent the base files for the paper: Blois, Jessica L., Gotelli, Nicholas J., Behrensmeyer, Anna K., Faith, J. Tyler, Lyons, S. Kathleen, Williams, John W., Amatangelo, Kathryn L, Bercovici, Antoine, Du, Andrew, Eronen, Jussi T., Graves, Gary R., Jud, Nathan, Labandeira, Conrad, Looy, Cynthia, McGill, Brian, Patterson, David, Potts, Richard, Riddle, Brett, Terry, Rebecca, Tóth, Anikó, Villaseñor, Amelia and Wing, Scott (2014). A framework for evaluating the influence of climate, dispersal limitation, and biotic interactions using fossil pollen species associations across the late Quaternary. Ecography 37: 1095-1108. doi: 10.1111/ecog.00779 submitted to Ecography 5 November 2013, accepted 11 May 2014, published 31 October 2014 Included are a README.txt file, 22 csv files representing the fossil pollen relative abundances for each site from time slices at every thousand years from 21 to 0 thousand calibrated years before present, and the environmental characteristics of each site at each time period.
DOI: 10.6084/m9.figshare.841754.v1
title: Moving Group Candidates Estimated Mass Function

description: These plots show histograms of the mass estimates of <em>bona fide</em> members and candidates members of all young moving groups including TW Hydrae, Beta Pictoris, Tucana-Horologium, Carina, Columba, Argus and AB Doradus. Green bars are <em>bona fide</em> members, yellow bars represent a log-normal IMF consistent with the current number of <em>bona fide</em> members, red bars are candidate members from Gagné et al. (in prep.), purple bars are candidates members for which youth was confirmed (Gagné et al. in prep. and Gagné et al. 2013, submitted to ApJ). Fuschia bars are candidate members from Malo et al. (2013) and Malo et al. (2014, submitted to ApJ). Masses were estimated by comparing absolute magnitudes computer from Bayesian statistical distance predictions with AMES-COND isochrones (Baraffe et al. 2003) in combination with CIFIST2011 BT-SETTL atmosphere models (Allard et al. 2013, Rajpurohit et al. 2013) in a likelihood analysis (See Gagné et al. 2013, submitted to ApJ for more information). All files are available in PDF and EPS formats. Please cite the article below (see link) if you use these figures.
DOI: 10.6084/m9.figshare.841742
title: ORCID iD Growth

description: Data corresponding to ORCID's growth since launch
DOI: 10.6084/m9.figshare.841739
title: Pharo First Class Layouts and Slots

description: Programming idioms, design patterns and application libraries often introduce cumbersome and repetitive boilerplate code to a software system. Language extensions and external DSLs (domain specific languages) are sometimes introduced to reduce the need for boilerplate code, but they also complicate the system by introducing the need for language dialects and inter-language mediation. To address this, we propose to extend the structural reflective model of the language with object layouts, layout scopes and slots. Based on the new reflective language model we can 1) provide behavioral hooks to object layouts that are triggered when the fields of an object are accessed and 2) simplify the implementation of state-related language extensions such as stateful traits. By doing this we show how many idiomatic use cases that normally require boilerplate code can be more effectively supported. We present an implementation in Smalltalk, and illustrate its usage through a series of extended examples.
DOI: 10.6084/m9.figshare.841755.v4
title: Spatial Networks for Archaeology

description: Slides for two invited talks given in November 2013. The talks are very similar. First an invited talk given at the workshop on "Networks over space and time: modelling, analyzing, and representing complex data in the digital humanities", on 8th November 2013 at FCSH, Universidade Nova de Lisboa, Lisbon, Portugal. (WG1, Spatial and temporal modelling: representation of space and time, NeDiMAH). Second, an invited talk given on 22nd November at the workshop "Modeling the Past – Predictive Approaches to Climate, Environment, Population and cultural Dynamics in Prehistory", in Berlin 21-22 November 2013. Parts of TOPOI.
DOI: 10.6084/m9.figshare.841755.v5
title: Spatial Networks for Archaeology

description: Slides for an invited talk given at the workshop on "Networks over space and time: modelling, analyzing, and representing complex data in the digital humanities", on 8th November 2013 at FCSH, Universidade Nova de Lisboa, Lisbon, Portugal. (WG1, Spatial and temporal modelling: representation of space and time, NeDiMAH).
DOI: 10.6084/m9.figshare.841733
title: numerical representation of phylogenetic tree

description: Presentation done in TWDG 2013 in workshop Sharing and delivery of reusable phylogenetic knowledge.
DOI: 10.6084/m9.figshare.841723
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841724
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841733.v1
title: numerical representation of phylogenetic tree

description: Presentation done in TWDG 2013 in workshop Sharing and delivery of reusable phylogenetic knowledge.
DOI: 10.6084/m9.figshare.841722
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841723.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841724.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841718
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841719
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841721
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841721.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841703
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841710
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841718.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841722.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841694
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841695
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841710.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841719.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841692
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841695.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841703.v1
title: Gaussian Job Archive for C17H23NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841694.v1
title: Gaussian Job Archive for C15H21NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.841655
title: Deacetylase activities of rHos2 and dose response curves of rHos2 inhibition by standard HDAC inhibitors

description: Dose response curve of rHos2 enzyme inhibition by SAHA: Fluorimetric deacetylase assay with rHos2 protein using Boc-Lys(ac)-AMC substrate in presence of different concentrations of suberoylanilide hydroxamic acid (SAHA). Dose response curve of rHos2 enzyme inhibition by TSA: Fluorimetric deacetylase assay with rHos2 protein using Boc-Lys(ac)-AMC substrate in presence of different concentrations of trichostatin. Dose response curve of rHos2 enzyme inhibition by MS275: Fluorimetric deacetylase assay with rHos2 protein using Boc-Lys(ac)-AMC substrate in presence of different concentrations of MS-275. rHos2 conc_Enzyme activity: Fluorimetric deacetylase assay with rHos2 protein using Boc-Lys(ac)-AMC substrate.