cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15454/nnj75s
title: Soil and root traits - Laboratory experiment

description: Soil respiration, moisture and physical and chemical properties, and root physical and chemical traits measured in the laboratory inoculation experiment. In this experiment, we extracted soil columns from an arable and secondary woodland and used a third unstructured loamy soil as a control. We sterilized these three soils to remove microbial communities and then inoculated the tops of sterilized soil columns with soil from the secondary woodland or the arable field sites. Control columns of all soil types were not inoculated. In a fully-crossed design, we planted two species possessing distinct root system morphologies: Brachypodium sylvaticum (fibrous system with many thin and fine roots) and Urtica dioica (taproot system with few fine roots). After four months, microbial communities (in bulk and rhizospheric soil) and aggregate stability were measured, along with root traits. In both the field and laboratory experiments, bacterial (16S) and fungal (ITS) diversity was determined using high throughput sequencing.
DOI: 10.15454/nwocb6
title: RPG complété 2019 département 39

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 39. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/o8mz3k
title: RPG complété 2018 département 79

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 79. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/ommabo
title: Dynamics of pure even-aged ash (Fraxinus excelsior L.) stands in view to modelizing“size-density”trajectories of unthinned ash stands, with application in evaluating the impact of Chalara dieback on ash mortality

description: The ash datasets came essentially from two networks of permanent and semi-permanent plots installed in the north and the north-east of France. - the first set of permanent plots (set #1) belonged to a network installed in the 1990’s period to study the effects of thinnings on the dynamics (growth and mortality) of pure even-aged ash stands. For the present study, only the unthinned plots of this network (“control plots”) were considered. The stands covered a wide range of initial densities (from 1100 to 40 000 trees per ha). An old additional plot, ‘Fleur-Fontaine’, installed in 1907, was also considered, but only for the period before thinning. In some cases, cleaning operations were performed at the installation of those plots so as to lower the initial stand density and at the same time reduce the importance of species mixed with ash in natural regenerations (‘Val-Saint-Pierre’). - the second set of semi-permanent plots (set #2) was installed later to study more specifically the dynamics of stands at maximum density. These plots were generally young stands originating from natural regenerations, and only those where regular mortality had not started at installation were retained for the study. The four semi-permanent plots retained presented the highest densities observed in the whole data set (between 49000 and 105000 trees per ha). The presence (or absence) of Chalara fraxinea dieback in the studied plots was also mentioned in the data set for each inventory year. The following data appear in the ash dataset: - “Dataset”: data sets #1 and #2 - “Forest”: name of forest - “Plot”: plot number - “Block”: block number - “Dinit”: initial density (‘treatment’) - “Year”: year of inventory - “Cg”: quadratic mean girth at breast height (cm) for years of inventory - “N”: number of live trees per ha for years of inventory - “N0”: number of live trees per ha for the first year of inventory - “Age”: age of the stand (in years) - “Ho”: dominant height (m) = mean height of the largest 100 trees per ha - “Chalara”: absence (0) or presence (1) of Chalara for years of inventory
DOI: 10.15454/oqt5cy
title: FlintDent GWAS dataset

description: This dataset corresponds to the data associated with the study: "Disentangling group specific QTL allele effects from genetic background epistasis in GWAS: an application to maize flowering" by Rio et al. (2019). The data includes genotypic and phenotypic information for a panel of 970 maize inbred lines, including 300 dent, 304 flint and 366 admixed lines that were generated by mating dent and flint lines. The R code used to run GWAS analyses and GWAS results were also included to this dataset.
DOI: 10.15454/jyitk4
title: Replication data for Memory and microbiota-gut-brain-axis in quail

description: This data set was obtained from a line of Japanese quail (Coturnix coturnix japonica) that shows increased behavioral and cognitive changes after a chronic stress procedure. It was used in the demonstration that chronic stress alters gut microbiota composition and that the colonization of recipient germ-free quails with the gut microbiota from a chronically stressed individual impairs the recipient quails’ memory performance.
DOI: 10.15454/lcl4ls
title: RPG complété 2018 département 49

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 49. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/pmbls9
title: RPG complété 2018 département 37

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 37. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/mwpxdp
title: Dataset linked to the publiation C. Barrasso et al, 2019, "Model-based QTL detection is sensitive to slight modifications in model formulation" in Plos ONE.

description: This dataset contains raw data used in the publication "Model-based QTL detection is sensitive to slight modifications in model formulation" submitted to Plos ONE journal by Caterina Barrasso, Mohamed-Mahmoud Memah, Michel Génard, Bénédicte Quilot-Turion in March 1st 2019. The "FruitGrowthData_progeny_PlosONEpaper_Barrasso_etal_2019" contains observed data of fruit growth. The "GeneticMap_GenotypeData_progeny_PlosONEpaper_Barrasso_etal_2019" contains molecular markers data and genetic map data.
DOI: 10.15454/nqaf31
title: Experimental validations of TE-impacted coding or regulatory loci

description: Contains experimental validations results. The sup_mat_2.pptx file summarize: i) Characteristics of the tested loci: position in the genome, inserted TE, the region surrounding the insertion point, TE frequency values per isolate, experimental design (primers sequences, Tm), ii) PCR results (gel), iii) Sequencing results. All the other files are the original result pictures from the PCR experiments testing the insertion of TEs in 12 isolates of M. incognita.
DOI: 10.15454/nqex46
title: Gene annotation of the Illumina draft of the Plasmopara viticola genome

description: This dataset includes the gene annotation for the Illumina draft of the Plasmopara viticola genome. This genome draft has been published in Dussert et al. 2016 (doi.org/10.1128/genomeA.00987-16). The assembly can be found on GenBank (accession GCA_001695595.1).
DOI: 10.15454/nqmzwz
title: Organic farming at local and landscape scales fosters biological pest control in vineyards

description: Raw data on predation rates in vineyards. Based on sentinel approaches
DOI: 10.15454/oakdvi
title: Supplementary tables to manuscript: “Comparison of double-stranded RNA (dsRNA) and Virion-associated nucleic acids (VANA) metagenomic approaches for phytovirome analyses”

description: Supplementary tables to manuscript in Chapter 2
DOI: 10.15454/ogjnic
title: Dataset for the Global Change Biology paper "Feasibility of the 4 per 1000 aspirational target for soil carbon. A case study for France", published as part of the French 4 per mille study.

description: Increasing soil organic carbon (SOC) stocks is a promising way to mitigate the increase in atmospheric CO2 concentration. Based on a simple ratio between CO2 anthropogenic emissions and SOC stocks worldwide, it has been suggested that a 0.4% (4 per 1000) yearly increase of SOC stocks could compensate for current anthropogenic CO2 emissions. Here, we used a reverse RothC modelling approach to estimate the amount of C inputs to soils required to sustain current SOC stocks and to increase them by 4‰ per year over a period of 30 years. We assessed the feasibility of this aspirational target first by comparing the amount of C inputs required with net primary productivity (NPP) flowing to the soil, and second by considering the SOC saturation concept. Calculations were performed for mainland France, at a 1 km grid cell resolution. This dataset gives the main results supporting these conclusions, as well as the uncertainty attached to these results.
DOI: 10.15454/p27ldx
title: Historical Phenology Data from Versailles Research Center, INRAE, TEMPO network

description: Données d'observation de la phénologie de plusieurs plantes (Arbres, arbustes, fruitiers, plantes vivaces...) du centre INRAE de Versailles entre les années 1929 et 1977. Il comprend 9 fichiers dont 3 fichiers de données. Chaque fichier de données phénologiques a 2 fichiers métadonnées (une version française et une version anglaise) associées pour aider à sa compréhension. Ces données ont été saisies dans le cadre des activités du Réseau TEMPO autour de la sauvegarde des données historiques.
DOI: 10.15454/prgt8l
title: RPG complété 2018 département 85

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 85. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/ltlp94
title: RPG complété 2019 département 16

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 16. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021
DOI: 10.15454/okotmf
title: RPG complété 2018 département 63

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 63. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/padea1
title: Growth data for 26 provenances of Quercus petraea and Q robur at three common gardens in France

description: The dataset is composed of 5 columns and 1140 lines: “Garden” is the code for the common garden: 1 is for “Petite Charnie” (western France), 2 for “Vincence” (center of France) and 3 for “Sillegny” (north-eastern France) “Code” is the code number of the oak provenance “Provenance” is the name of the source site of the acorns (see table 1 of the paper for details) “Year” is the year of growth “GI” is the Growth Index: 33 954 tree rings on the 2420 dominant or co-dominant trees were analyzed. Each individual series of Basal Area Increment was double-detrended with the ratio between the raw value and the fitted cubic splines in the DENDRO function in R (Cook and Peter, 1981; Mérian, 2012) and 78 detrended master chronologies were calculated. These 78 master chronologies were used to compute the climate-tree growth relationships from the common period 1996-2010 and are included in the present dataset.
DOI: 10.15454/qsr3yo
title: Approximate Bayesian Computation with Random Forest and Sensitivity Analysis for the calibration of a complex aquatic ecological model

description: This dataset gather scripts and data files that are related to the calibration of the model Delft3D-BLOOM on the case study of Lake Champs-sur-Marne with the ABC-RF (Approximate Bayesian Computation – Random Forest) method coupled with sensitivity analysis. There are several types of files: (1) observed and simulated data, that is the data coming from the set of 30000 simulations that have been performed to make the calibration; (2) R and matlab scripts for the application of the calibration strategy and the analysis/plot of the results; (3) files with results of the calibration runs performed for the calibration of the model BLOOM on the case study of Lake Champs-sur-Marne.
DOI: 10.15454/lyqoep
title: Traduction française de la table des matières de Apidologie, 2021, Vol 52, n° 1

description: Traduction française de la table des matières de Apidologie, 2021, Vol 52, n° 1, 5 p. Version anglaise https://link.springer.com/journal/13592/volumes-and-issues/52-1 (consulté le 21 avril 2021). French translation of the table of content of Apidologie, 2021, Vol 52, Issue 1, 5 p. English version https://link.springer.com/journal/13592/volumes-and-issues/52-1 (accessed 21 April 2021).
DOI: 10.15454/m1vrkz
title: RPG complété 2019 département 65

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 65. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/nfqrrb
title: Ensemble de statistiques sommaires issues de la Base de Données d'Analyse de Terre (BDAT)

description: La base de données des analyses de terre regroupe les résultats d’analyses des parcelles agricoles effectuées à la demande des agriculteurs sur l’ensemble du territoire national par les laboratoires agréés du Ministère. Les données sont définies par le lieu et la date de prélèvement. L’ensemble de la base de données permet d’avoir un suivi sur la variabilité des caractéristiques de l’horizon de surface des sols cultivés et leur évolution au cours du temps. Ce jeu de données rassemble des tableaux statistiques sommaires calculées sur l'ensemble du territoire pour plusieurs périodes temporelles de 5 ans (1990, 1995, 2000, 2005, 2010 et 2014)
DOI: 10.15454/owjjuu
title: Economic optimization of feeding and shipping strategies in pig-fattening using an individual-based model

description: Economic results of pig-fattening systems vary greatly and depend in part on prices of pork and feeds, as well as pig growth performance (e.g. slaughter weight, lean percentage). Previous studies revealed that feeding and shipping strategies are critical factors in the economic outputs of pig production. However, they failed to consider both strategies and the variability in pig growth performance simultaneously. Consequently, we developed a new approach to improve the profitability of pig farms by estimating the best compromise among feeding costs, animal performance, and shipping constraints. We used an individual-based bioeconomic model that simulates the growth of each pig according to its biological traits (e.g. feed intake and protein deposition potential) as a function of different feeding and shipping strategies. The optimization problem is solved using an evolutionary algorithm (CMA-ES, covariance matrix adaptation evolution strategy) that manages the objective function, which is discontinuous, non-convex, nonlinear, and multimodal. Various case studies were constructed to investigate the behavior of the optimization procedure. This dataset provides code and data used in the article submitted to Agricultural Systems journal on March 31st, 2020
DOI: 10.15454/oxi51h
title: RPG complété 2018 département 01

description: RPG complété 2018. Complète le RPG campagne 2018 pour le département 01. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2020.
DOI: 10.15454/pncvty
title: Maize landraces from South-West France genotyping dataset

description: This dataset corresponds to the genotypic data associated with the study: " Genetic diversity of maize landraces from the South-West of France " by Diaw et al. (2021). The data includes genotypic information for the 194 maize landraces from South-West France obtained with the 50K Illumina Infinium HD array (Ganal et al., 2010). The allelic frequencies were predicted from DNA bulks using the two step approach published by Arca et al. (2020) in Frontiers in Plant Science. See dataverse for allelic frequencies prediction in https://doi.org/10.15454/GANJ7J.
DOI: 10.15454/pptbpy
title: Dataset for "Climate warming differently affects Larix decidua ring formation at each end of a French Alps altitudinal gradient"

description: Annual ring density data used for the article "Climate warming differently affects Larix decidua ring formation at each end of a French Alps altitudinal gradient"
DOI: 10.15454/pvcalf
title: Barley seed protein identification

description: Mass spectrometry data used for Barley seed protein identification.
DOI: 10.15454/pvloco
title: Data associated to the paper "Central role of G protein Gαi2 and Gαi2+ vomeronasal neurons in balancing territorial and infant-directed aggression of male mice" Proc Natl Acad Sci U S A. 2019

description: This dataset consists of an Excel workbook containing the raw data from Figs. 1B, 1C, 2B, 2D, 3A, 3B, 3E, 3G, 4B, 4D, S1C, S1D, S1F, S1G, S3A-G, S4A-C associated to the publication Trouillet et al. Proc Natl Acad Sci U S A. 2019 Feb 25. pii: 201821492. doi: 10.1073/pnas.1821492116
DOI: 10.15454/qet4sp
title: Feedback Survey Results of the Goal-Defining-Workshops

description: Results of the survey with the participants the six Goal-Defining-Workshops, that were organized in all six FAIRCHAIN-case studies in 2021. The surveys were translated to the language of each country.
DOI: 10.15454/qhew7b
title: Domestic hens succeeded at serial reversal learning and concept generalization using a new automated touch-screen device

description: The data corresponds to cognitive performances of a small group of individuals (Gallus gallus domesticus) in two tasks: a short serial reversal learning task, and an identity concept generalization test implemented through a delayed matching-to-sample task.
DOI: 10.15454/m2gi65
title: Atmospheric and soil climate dataset from Puéchabon in natura site for year 2014

description: The dataset was produced in experimentations from the network SOERE F-ORE-T on the Puechabon experimental site in the Forest Ecosytem during the year 2014. Measurements of the following variables are included: air relative humidity, air temperature, cumulative rainfall, soil temperature, soil volumetric water content. The dataset was formatted and published using AnaEE semantic services and vocabularies
DOI: 10.15454/m7ok9e
title: Flux tower by Eddy Covariance and InfraRed scintillometry on ORACLE observatory

description: Observational data from flux tower and infrared scintillometry. Data are associated with micro-meteorological data. All data is measured at high-frequency. Data have been collected during CRITEX/EQUIPEX project on the ORACLE observatory (INRAE). These data are free available on the BDOH database (https://doi.org/10.17180/obs.oracle).
DOI: 10.15454/n9tscv
title: RPG complété 2019 département 52

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 52. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/ormzeq
title: RPG complété 2019 département 87

description: RPG complété 2019. Complète le RPG campagne 2019 pour le département 87. (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2021.
DOI: 10.15454/p2dybq
title: Conseil et accompagnement pour les réglages de pêche électrique (CARPE)

description: Pour combiner l’efficacité de capture des pêches scientifiques à l'électricité et le bien-être des poissons (dans des conductivités allant de 100-10000 µS.cm-1), il est recommandé de mesurer la distance de gradient de tension de 0,1 V.cm-1 afin de régler la tension selon la situation. Dans le cas où cela n’est pas possible, un fichier Excel® nommé CARPE (conseil et accompagnement pour les réglages de pêche électrique) permet de calculer le réglage de la tension sur l’engin de pêche électrique en fonction de sa configuration et des conditions relatives au milieu.
DOI: 10.15454/pympnp
title: MRSI vs CEST MRI to understand tomato metabolism during fruit development: is there a better contrast?

description: Raw data supporting the results presented in the paper entitled "MRSI vs CEST MRI to understand tomato metabolism during fruit development: is there a better contrast?" The files named ExperimentalDetails v2 (xlsx or pdf) describe the dataset
DOI: 10.15454/rjkjbn
title: Ontology for Food Processing Experiment

description: OFPE is a generic ontology specialized for food processing experiments, where raw materials are transformed into final products. It includes different classes that represent products and activities during food transformation processes, which can be classified into four main concepts, i.e., Product, Operation, Attribute, and Observation.
DOI: 10.15454/rtbo3o
title: The use of pig vocalisations structure to assess the quality of human-pig relationship

description: Data of the article
DOI: 10.15454/mjtrxm
title: Nutritional status according to weight status in French older adults

description: This table include data relative to the nutritional status (questionnaire MNA) and to the weight status (underweight, normal-weight, overweight, obese) of French older adults (&gt;65).
DOI: 10.15454/ndfqjd
title: Microsatellite typing data for Labonne et al. 2020 - Genes special issue

description: These data files provide the genotypes for 15 microsatellite markers in two populations using the NewHybrids format file, in order to determine the pedigree of individuals. They also provide file format to run analyses in Colony for families assignations.
DOI: 10.15454/ocop9b
title: Raw phenotypic data obtained on the Arabidopsis RILs with the Phenoscope robots (Marchadier, Hanemian, Tisné et al., 2018)

description: This dataset gathers the main raw phenotypic data obtained and exploited in Marchadier, Hanemian, Tisné et al. (2019). It contains data from 4 RIL sets across 9 Phenoscope experiments. For each Phenoscope experiment, Recombinant Inbred Line (RIL) and Condition ('WW' = Well Watered / 'WD' = Water Deficit), the data set indicates the phenotypic value for 6 traits at 21 successive time points. 'Trait.XX' = Trait at XX days after sowing, with 'XX' = 09 to 29 and 'Trait' = PRA (Projected Rosette Area; in cm2), GreenMean / RedMean / BlueMean (rosette pixels' colour components; arbitrary unit), ConvexHullArea (area of the convex hull encompassing the rosette; in cm2) and CircleRadius (radius of the smallest circle encompassing the rosette; in cm). RIL set IDs and RIL IDs are according to Publiclines http://publiclines.versailles.inra.fr/rils/index Please note that beyond Marchadier, Hanemian, Tisné et al. (2019), we are now extending our analysis of these data especially toward dynamics growth analyses.