cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11048843
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11223053
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610147
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122350
title: Linked collectors and determiners for: Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917.

description: Natural history specimen data linked to collectors and determiners held within, "Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122351
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122352
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122353
title: Linked collectors and determiners for: Fiocruz/COLFLEB - Coleção de Flebotomíneos.

description: Natural history specimen data linked to collectors and determiners held within, "Fiocruz/COLFLEB - Coleção de Flebotomíneos". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13385366
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13385367
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13971783
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583518
title: Linked collectors and determiners for: Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917.

description: Natural history specimen data linked to collectors and determiners held within, "Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583519
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583520
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10583522
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.57745/9z1gyc
title: Données de rendement et de valeur alimentaire des cultures fourragères estivales acquises dans le cadre de l'essai Cap Proteines volet élevage.

description: Ce jeu de donnée contient les données brutes de l'essai Cap Proteines volet elevage_Cultures Fourragères Estivales (CFE). Cet essai en bloc randomisé, a été répété deux années (2021 et 2022) sur quatre sites expérimentaux français : ARVALIS – Ferme Expérimentale des Bordes 36120 JEU LES BOIS, INRAE – UE 1297, Unité Expérimentale Physiologique Animale de l’Orfrasière 37380 NOUZILLY, CIIRPO – Ferme Expérimentale du Mourier 87800 SAINT PRIEST LIGOURE, IDELE – 42 rue Georges Morel – CS 60057 49071 BEAUCOUZE
DOI: 10.57745/atsyed
title: DMP of GenoToul Bioinfo facility

description: The data management plan of the infrastructure concerns three types of data: • Data-U: user data stored on working spaces assigned to user and project accounts. • Data-P: data related to projects supported by GenoToul bioinfo. These data are stored in project or user accounts. They are processed within the framework of collaboration or service provision. • Data-O: data mutualized between users, including workflows, software (compiled code, source code) and databanks (flat files) and associated metadata. They are hosted either on our computing infrastructure and/or on virtual machines.
DOI: 10.57745/8kbofp
title: Podocyrtis chalara and Podocyrtis goetheana including intermediate forms image dataset

description: Two images datasets of Podocyrtis chalara and Podocyrtis goetheana including intermediate forms one or two intermediate forms. One dataset consists of four classes while the other consists of three classes. These images are used for training Artificial Neural Networks (ANNs). Images from this dataset taken with a microscope in the University of Lille and the samples are coming from the Ocean Drilling Program (ODP) Leg 207, Site 1260 drilled at the Demerara Rise off the coast of Suriname.
DOI: 10.57745/9g5xpe
title: JDS2024-25297_Supplemental_figures

description: This is a supplementary figure for the manuscript titled "Sensitivity analysis of the INRA 2018 feeding system for ruminants by hybrid local and global approaches: Comparing the contribution of dietary input variables to multiple response prediction in dairy cattle" submitted to Journal of Dairy Science. It includes the reactant graphs of rumen protein balance (RPB) and OMd for five input variables (CP, GE, OMd, ED6_N, and dr_N) and their tangent values at the reference point.
DOI: 10.57745/9pg9ez
title: final table used for the analysis

description: Final table used for the analysis, countaining mainly for each site and for each year the resilience indices and SPEI indices. siteID = site identification (see article sup. mat. table S1, for site details) RWI = Ring Width Index moy.RWI.prec4 = mean RWI of the 4 preceding years moy.RWI.prec3 = mean RWI of the 3 preceding years etc... moy.RWI.suiv4 = mean RWI of the 4 following years moy.RWI.suiv3 = mean RWI of the 3 following years etc... resist_s1 = resistance index computed for L=1 recov_s1 = recovery index computed for L=1 resil_s1 = resilience index computed for L=1 resist_s2 = resistance index computed for L=2 etc... SPEI = annual SPEI index WBAL = annual Water Balance index (mm) WBAL_ref = mean water balance of the site (mm) AI = Aridity Index of the site bioclim = bioclimate of the site moy.SPEI.prec4 = mean SPEI index of the 4 preceding years etc... moy.SPEI.suiv4 = mean SPEI index of the 4 following years etc...
DOI: 10.57745/a9e3ux
title: Fiches incertitudes des modèles hydrologiques de surface du projet Explore2 : Y Fleuves côtiers du Rhône-Méditérannée et Corse

description: Ensemble de fiche descriptives des incertitudes du projet Explore2 aux points de simulation pour la région hydrologique Y Fleuves côtiers du Rhône-Méditérannée et Corse Accompagnement de lecture des fiches Incertitudes Le projet Explore2 a produit une quantité inédite de données hydrologiques. Ainsi, des ensembles de projections hydrologiques ont été élaborés sur près de 4000 points de simulation répartis en France hexagonale. Les fiches incertitudes visent à décrire les incertitudes de ces ensembles pour chacun des 3991 points de simulations hydrologiques (surface) obtenus avec la méthode de correction ADAMONT, pour trois indicateurs: QA, QJXA, et QMNA. Les valeurs numériques ne doivent pas être lues sur ces fiches, mais dans les fichiers de données brutes ou d’indicateurs pré-calculés mis à disposition, comme les fiches de synthèse, sur le portail « DRIAS les futurs de l’eau ». Ce document a pour objectif d’expliciter le contenu de ces fiches de synthèse des incertitudes.
DOI: 10.57745/9tdahd
title: RPG complété 2021 Région Bretagne

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Bretagne (22, 29, 35, 56). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/apdplq
title: 16S-ITS-23S-DB database

description: Extraction of 16S-ITS-23S sequences: All GenBank and RefSeq genomes of Archaea and Bacteria from GTDB v214 [1] were downloaded using genome_updater v0.6.2. A total of 402,695 assemblies were downloaded, excluding 4 assemblies with missing fna files and 77,032 assemblies with missing annotation files. These incomplete genomes were ignored, leaving 402,691 assemblies with sequences. The annotation file (GFF) was parsed to identify the 16S and 23S genes. Identification was performed by applying regex patterns to the product or gene attributes of the rRNA annotations. Pairs of 16S and 23S genes were generated under the following conditions: (i) Both 16S and 23S genes must be on the same strand, (ii) the extracted portion must be between 3000 and 7000 nucleotides in length and (iii) the region must begin with 16S and end with 23S. Genomic regions meeting these criteria have been extracted. A total of 358,166 16S-ITS-23S regions were found in 142,377 out of the 402,691 assemblies. Preprocessing of the 16S-ITS-23S sequences Since 358,166 16S-ITS-23S regions, for removing redundant information, identical sequences with the exact same taxonomy were dereplicated, resulting in a total of 199,690 unique sequences. To identify and remove potential eukaryotic contamination, the sequences were blasted against a S. cerevisae 35S sequence. Sequences with a query identity at 70% minimum and a coverage greater than 40% were removed e.g. 283 sequences. 1. Parks DH, Chuvochina M, Rinke C, Mussig AJ, Chaumeil PA, Hugenholtz P. GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Res. 2022;50(D1):D785-D94.
DOI: 10.57745/asglbh
title: Dataset for the High Multiplicity RCPSP with Learning Effect

description: This dataset contains data generated for the High Multiplicity RCPSP with Learning Effect (HM-RCPSP/L) based on the PSPLIB.
DOI: 10.57745/7y0pqw
title: Historical pictures (1875-1975) of astronomical instruments at Paris, Meudon, Pic du Midi, and Saint Véran Observatories

description: This dataset of historical pictures and photographs was gathered by the author during his career from many sources, such as observatory archives, articles, scientific reviews or annals. It concerns the instrumental history of some telescopes and spectrographs, in particular those dedicated to solar physics (as this is the speciality of the author). Some images were extracted from old astronomical collections or periodic journals (such as annals of Meudon Observatory digitized by Gallica/BNF). The archive contains also a few movies. Several papers of the author about the history of instruments (such as Meudon spectroheliograph, heliographs, Pic du Midi Turret Dome and flare spectrographs, Saint Véran coronagraph) are included in the deposit. All pictures are for non commercial use only; for most of them, the author could not be identified and are now in the public domain; however, a credit must be given to the observatories.
DOI: 10.57745/7y3g5w
title: Raw bulk density and coarse fragment data of the first campaign of the French Soil Quality Monitoring Network

description: The French Soil Quality Monitoring Network (RMQS) is a national program for the assessment and long-term monitoring of the quality of French soils. This network is based on the monitoring of 2240 sites representative of French soils and their land use. These sites are spread over the whole French territory (metropolitan and overseas) along a systematic square grid of 16 km x 16 km cells. The network covers a broad spectrum of climatic, soil and land-use conditions (croplands, permanent grasslands, woodlands, orchards and vineyards, natural or scarcely anthropogenic land and urban parkland). The physical, chemical and biological properties of the soil are measured on each site, during the first campaign and presently on the second campaign. The spatial and temporal variability of soil properties are explained by biophysical variables, sources of contamination, history of land-use and management practices on each plot. The first sampling campaign in metropolitan France took place from 2000 to 2009. This campaign focused on soil contamination assessment and made it possible to map key soil parameters (28 variables) as well as 12 trace metal elements and 70 persistent organic pollutants. The sampling method, measurements and observations on each site are described in the “RMQS guidelines”1 (in French: “manuel du RMQS” see associated publications). The second campaign started in 2016 and should last 12 years. The dataset includes raw bulk density and coarse fragment data from samples performed on the pits until 50 cm, according three pseudo-replicates for each corresponding layer. Weight at field, dry weight, coarse fragment weight, volume are available for each pseudo-replicate. Soil moisture, bulk density , fine earth density and coarse fragment content were thus calculated.
DOI: 10.57745/99snoz
title: Annotated datasets from PADI-web for event-based surveillance of Avian Influenza, African Swine Fever, and West-Nile Virus Disease

description: These datasets concern unstructured data (articles) from news items detected by an event-based surveillance system; PADI-Web, between 2022 and 2023. Collected articles were manually annotated by relevance for epidemic intelligence purposes with the help of two epidemiologists Extracted data include relevant articles (with two possible labels; epidemiological events or general information) and irrelevant information regarding three different diseases: Avian Influenza (AI), African Swine Fever (ASF) and West Nile Virus disease(WNV). This database is extensive as it deals with different types of diseases (zoonotic, cross-border and vectorial disease ) and can be used to train or evaluate classification approaches to automatically identify written text on these diseases events and classify them by relevance. The structure of the dataset is as follow: Alert_id: Article identifier. Note that each article has a unique ID, if an article reports multiple events, it is duplicated and each line represent one event. Title: Article's title given by the news outlet. hsource: URL of the news outlet reporting the article. Source: Name of the news outlet reporting the article. url: URL information of the article reporting the considered event. Note that multiple articles can report same event. Issue_date: Date of the article publication Country: Name of the country where the event happened Place_name: Name of the administration, city or district where the event happened, if none of these is mentionned in the text, the country's name is reported. Administrative_division: The administrative level at which the information is reported (country, department, city...) Disease_name: Name of the disease that is reported in the article Species_name: Name of the affected host that is reported in the article Manualclass: Manual classification (Relevant or Irrelevant) Lat: Place_name lattitude coordinates Lon: Place_name longitude coordinates
DOI: 10.57745/9l2yub
title: A 2 month-long annotated skylight polarization images database.

description: A public database composed of real-world color polarimetric images of the sky in various weather condition over two month (07/08-2022) in La Timone, Marseille, with improved calibration in regard of previous work (https://doi.org/10.57745/610QTS) and manual annotation of weather conditions. Associated code on github : https://github.com/mol-1/A-2-month-long-annotated-skylight-polarization-images-database---associated-code
DOI: 10.57745/agtlkc
title: Insights into the almond domestication history and its resistance to sharka viral disease

description: Using population genetics, we investigated the domestication history of almonds using a comprehensive collection of 209 wild and cultivated almonds from Eurasia genotyped with 23 microsatellite markers.
DOI: 10.57745/apk5ef
title: MassiveFold data for target T1280

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)