cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3886/e112449v1-94264
title: Replication data for: Segregation and the Quality of Government in a Cross Section of Countries

description: We provide a new compilation of data on ethnic, linguistic, and religious composition at the subnational level for a large number of countries. Using these data, we measure segregation of groups within the country. To overcome the endogeneity problem that arises because of mobility and endogenous internal borders, we construct an instrument for segregation. We find that more ethnically and linguistically segregated countries, i.e., those where groups live more spatially separately, have a lower quality of government; there is no relationship between religious segregation and governance. Trust is an important channel of influence; it is lower in more segregated countries. (JEL H11, H77, J15, O17, Z12, Z13)
DOI: 10.5281/zenodo.5213926
title: Health service use_spatial_ dataset

description: This data set was used for the manuscript submitted to PLoS Global Public Health Journal. It is aggregate data from 54 kebeles (lowest administrative unit in Ethiopia) from two rural districts in Sidama region, southern Ethiopia. The study design was an ecological type.
DOI: 10.5281/zenodo.5213925
title: Health service use_spatial_ dataset

description: This data set was used for the manuscript submitted to PLoS Global Public Health Journal. It is aggregate data from 54 kebeles (lowest administrative unit in Ethiopia) from two rural districts in Sidama region, southern Ethiopia. The study design was an ecological type.
DOI: 10.6084/m9.figshare.15149041
title: Synthesis, spectroscopic and biological activity evaluation of Ni(II), Cu(II) and Zn(II) complexes of schiff base derived from pyridoxal and 4-fluorobenzohydrazide

description: A novel Schiff base ligand, 4-fluoro-N-((3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl)methylene)benzohydrazide (PLFBH) was synthesized by condensationof pyridoxal and 4-fluorobenzohydrazide. Its complexes with Ni(II), Cu(II), and Zn(II) metal ionswere prepared and characterized by spectroscopic IR, <sup>1</sup>H-NMR, UV, LC-MS, ESR, and powder XRD studies and by elemental analysis and thermal analysis, molar conductance, and magnetic susceptibility measurements. The results indicate the geometry of the complexes to be hexa coordinate distorted octahedral. Based on the electronic absorption and fluorescence emission spectra and viscosity studies, an intercalative mode of binding of the complexes with CT-DNA was suggested, which was also supported by DNA docking studies. The docking studies of metal complexes with DNA were carried out using Autodock 4.2. The <i>in vitro</i> anticancer assay for the Cu(II)-PLFBH complex was performed to assess the ability of the complex to inhibit human cell proliferation on HeLa human cervical carcinoma cells, MCF-7 human breast carcinoma cells, and A549 human lung carcinoma cells. The Cu(II)-PLFBH complex exhibited moderate to good inhibitory effect on the cancer cell lines studied. The complexes showed good cleavageability toward plasmid pBR322 DNA. The metal complexes were found to show good antibacterial activity against gram positive bacteria, <i>Staphylococcus aureus</i> and <i>Bacillus cereus</i> and gram negative bacteria <i>Escherichia coli</i> and <i>Pseudomonas aeruginosa</i> cultures,while the ligand showed marginal activity. Supplemental data for this article is available online at https://doi.org/10.1080/15257770.2021.1961271 . The Ni(II), Cu(II), and Zn(II) complexes of schiff base ligand, 4-fluoro-N-((3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl)methylene)benzohydrazide (PLFBH) derived from pyridoxal and 4-fluorobenzohydrazide were synthesized and characterized by various spectro-analytical techinques. The results indicate the geometry of the complexes to be hexa coordinate tetragonally distorted octahedral. Their DNA binding, cleavage, <i>in vitro</i> anticancer activity, molecular docking and antibacterial activity studies were carried out. All the metal complexes were found to show moderate to good biological activity.
DOI: 10.6084/m9.figshare.15149041.v1
title: Synthesis, spectroscopic and biological activity evaluation of Ni(II), Cu(II) and Zn(II) complexes of schiff base derived from pyridoxal and 4-fluorobenzohydrazide

description: A novel Schiff base ligand, 4-fluoro-N-((3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl)methylene)benzohydrazide (PLFBH) was synthesized by condensationof pyridoxal and 4-fluorobenzohydrazide. Its complexes with Ni(II), Cu(II), and Zn(II) metal ionswere prepared and characterized by spectroscopic IR, <sup>1</sup>H-NMR, UV, LC-MS, ESR, and powder XRD studies and by elemental analysis and thermal analysis, molar conductance, and magnetic susceptibility measurements. The results indicate the geometry of the complexes to be hexa coordinate distorted octahedral. Based on the electronic absorption and fluorescence emission spectra and viscosity studies, an intercalative mode of binding of the complexes with CT-DNA was suggested, which was also supported by DNA docking studies. The docking studies of metal complexes with DNA were carried out using Autodock 4.2. The <i>in vitro</i> anticancer assay for the Cu(II)-PLFBH complex was performed to assess the ability of the complex to inhibit human cell proliferation on HeLa human cervical carcinoma cells, MCF-7 human breast carcinoma cells, and A549 human lung carcinoma cells. The Cu(II)-PLFBH complex exhibited moderate to good inhibitory effect on the cancer cell lines studied. The complexes showed good cleavageability toward plasmid pBR322 DNA. The metal complexes were found to show good antibacterial activity against gram positive bacteria, <i>Staphylococcus aureus</i> and <i>Bacillus cereus</i> and gram negative bacteria <i>Escherichia coli</i> and <i>Pseudomonas aeruginosa</i> cultures,while the ligand showed marginal activity. Supplemental data for this article is available online at https://doi.org/10.1080/15257770.2021.1961271 . The Ni(II), Cu(II), and Zn(II) complexes of schiff base ligand, 4-fluoro-N-((3-hydroxy-5-(hydroxymethyl)-2-methylpyridin-4-yl)methylene)benzohydrazide (PLFBH) derived from pyridoxal and 4-fluorobenzohydrazide were synthesized and characterized by various spectro-analytical techinques. The results indicate the geometry of the complexes to be hexa coordinate tetragonally distorted octahedral. Their DNA binding, cleavage, <i>in vitro</i> anticancer activity, molecular docking and antibacterial activity studies were carried out. All the metal complexes were found to show moderate to good biological activity.
DOI: 10.6084/m9.figshare.15074183.v1
title: <i>In silico</i> strategies for modeling RNA aptamers and predicting binding sites of their molecular targets

description: RNA aptamers are single-stranded nucleic acids of 20–100 nucleotides, with high sensitivity and specificity against particular molecular targets. <i>In vitro</i> production and selection of aptamers can be performed using the SELEX method. However, this procedure requires considerable time and cost. In this sense, bioinformatics tools play an important role in reducing the time and cost associated with development and production of aptamers. In this article, we propose bioinformatics strategies for modeling and analysis of the interaction with molecular targets for two RNA aptamers: ATP binding RNA aptamer and iSpinach aptamer. For this purpose, molecular modeling of the tertiary structure of the aptamers was performed with two servers (SimRNA and RNAComposer); and AutoDock Vina and rDock programs were used to dock their respective ligands. The predictions developed with these methods could be used for <i>in silico</i> design of RNA aptamers, through a simple and accessible methodology. Supplemental data for this article is available online at https://doi.org/10.1080/15257770.2021.1951754 .
DOI: 10.6084/m9.figshare.15074183
title: <i>In silico</i> strategies for modeling RNA aptamers and predicting binding sites of their molecular targets

description: RNA aptamers are single-stranded nucleic acids of 20–100 nucleotides, with high sensitivity and specificity against particular molecular targets. <i>In vitro</i> production and selection of aptamers can be performed using the SELEX method. However, this procedure requires considerable time and cost. In this sense, bioinformatics tools play an important role in reducing the time and cost associated with development and production of aptamers. In this article, we propose bioinformatics strategies for modeling and analysis of the interaction with molecular targets for two RNA aptamers: ATP binding RNA aptamer and iSpinach aptamer. For this purpose, molecular modeling of the tertiary structure of the aptamers was performed with two servers (SimRNA and RNAComposer); and AutoDock Vina and rDock programs were used to dock their respective ligands. The predictions developed with these methods could be used for <i>in silico</i> design of RNA aptamers, through a simple and accessible methodology. Supplemental data for this article is available online at https://doi.org/10.1080/15257770.2021.1951754 .
DOI: 10.5517/ccdc.csd.cc26mj3h
title: CCDC 2044546: Experimental Crystal Structure Determination

description: Related Article: Yu Zhou, Liwei Zhu, Yanjian Wang, Liangmin Yu, Xia Li|2021|CSD Communication|||
description: Related Article: Yu Zhou, Liwei Zhu, Yanjian Wang, Liangmin Yu, Xia Li|2021|Cryst.Growth Des.|21|2668|doi:10.1021/acs.cgd.0c01555
DOI: 10.5517/ccdc.csd.cc26b9tp
title: CCDC 2035702: Experimental Crystal Structure Determination

description: Related Article: Min Tang, Yiming Liang, Xingyu Lu, Xiaohe Miao, Liang Jiang, Jiali Liu, Shangshang Wang, Lifang Bian, Lin Wu, Zhichang Liu|2021|Cell Press: Chem|7|2160|doi:10.1016/j.chempr.2021.05.004
DOI: 10.5517/ccdc.csd.cc283hlh
title: CCDC 2088736: Experimental Crystal Structure Determination

description: Related Article: Ke-Yin Yu, Yu-Hua Deng, Xiao-Min Ge, Xian-Tao An, Peng-Fei Shu, Ye-Xing Cao, Xian-He Zhao, Chun-An Fan|2021|Org.Lett.|23|5885|doi:10.1021/acs.orglett.1c02003
DOI: 10.17028/rd.lboro.15358902
title: Supplementary Information Files for The optimal use of management

description: Supplementary Information Files for The optimal use of management<br>We analyze the management input from the perspective of a shadow cost minimizing firm. With the help of Bloom and Van Reenen (2007)’s management measure we estimate management’s shadow price, dual Morishima elasticities of substitution, and relative price efficiencies vis-à-vis labor and capital. We find that the shadow price of management is about 1.3 million US dollars per survey scale point. Management is a weak dual complement for labor but a strong dual complement for capital. Increases in management reduce the relative income share of labor but not capital. Most firms use too little management relative to both labor and capital, but relative use of management improves over time, with the combination of ownership and control, and competition.<br>
DOI: 10.17028/rd.lboro.15358902.v1
title: Supplementary Information Files for The optimal use of management

description: Supplementary Information Files for The optimal use of management<br>We analyze the management input from the perspective of a shadow cost minimizing firm. With the help of Bloom and Van Reenen (2007)’s management measure we estimate management’s shadow price, dual Morishima elasticities of substitution, and relative price efficiencies vis-à-vis labor and capital. We find that the shadow price of management is about 1.3 million US dollars per survey scale point. Management is a weak dual complement for labor but a strong dual complement for capital. Increases in management reduce the relative income share of labor but not capital. Most firms use too little management relative to both labor and capital, but relative use of management improves over time, with the combination of ownership and control, and competition.<br>
DOI: 10.15468/65ntc6
title: Two new oak gall wasp species (Hymenoptera: Cynipidae, Cynipini) from Quercus pontica (Fagaceae) in Turkey

description: This dataset contains the digitized treatments in Plazi based on the original journal article Azmaz, Musa, Katilmiş, Yusuf (2021): Two new oak gall wasp species (Hymenoptera: Cynipidae, Cynipini) from Quercus pontica (Fagaceae) in Turkey. Zootaxa 5016 (3): 382-394, DOI: https://doi.org/10.11646/zootaxa.5016.3.4
DOI: 10.6084/m9.figshare.15112365
title: Data from: Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary

description: This data and R-Code belongs to an Original Research Paper Ferenc, V., Merkert, C., Zilles, F. Sheppard, C.S. (2021) Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary. <i>Oecologia</i><i><br></i>Find details on methodology and analysis in the method section of the paper. Find details on the Dataset in the README_Ferenc_et_al_2021.txt file<br><i></i>
DOI: 10.6084/m9.figshare.15112365.v2
title: Data from: Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary

description: This data and R-Code belongs to an Original Research Paper Ferenc, V., Merkert, C., Zilles, F. Sheppard, C.S. (2021) Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary. <i>Oecologia</i><i><br></i>Find details on methodology and analysis in the method section of the paper. Find details on the Dataset in the README_Ferenc_et_al_2021.txt file<br><i></i>
DOI: 10.6084/m9.figshare.15112365.v1
title: Data from: Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary

description: This data and R-Code belongs to an Original Research Paper Ferenc, V., Merkert, C., Zilles, F. Sheppard, C.S. (2021) Native and alien species suffer from late arrival, while negative effects of multiple alien species on natives vary. <i>Oecologia</i><i><br></i>Find details on methodology and analysis in the method section of the paper. Find details on the Dataset in the README_Ferenc_et_al_2021.txt file<br><i></i>
DOI: 10.25345/c5dz7j
title: MassIVE MSV000088003 - Shotgun metabolomics revealed reprogrammed signaling pathways toward cancer development in non-alcoholic steatohepatitis
title: Non-alcoholic fatty liver disease is now considered the most common form of chronic liver disease. It is a complex metabolic disease that silently progresses into non-alcoholic steatohepatitis (NASH). In fact, NASH is the tipping point for pericellular fibrosis, cirrhosis and hepatocellular carcinoma (HCC). Despite being a complex metabolic disease, identification of the metabolic readout that functions in metabolic pathway perpetuation for HCC progression from NASH is still incompletely understood. With the aid of LC MS/MS this study unveiled the metabolic fingerprint of NASH and HCC-NASH patients and it illustrates a detailed map for the most predominant reprogrammed metabolic pathways that target HCC development from NASH.
DOI: 10.5281/zenodo.5222334
title: Data for "A Surface-Promoted Redox Reaction Occurs Spontaneously on Solvating Inorganic Aerosol Surfaces"

description: Dataset for "A Surface-Promoted Redox Reaction Occurs Spontaneously on Solvating Inorganic Aerosol Surfaces"
DOI: 10.5281/zenodo.5172690
title: Data for "A Surface-Promoted Redox Reaction Occurs Spontaneously on Solvating Inorganic Aerosol Surfaces"

description: Dataset for "A Surface-Promoted Redox Reaction Occurs Spontaneously on Solvating Inorganic Aerosol Surfaces"
DOI: 10.17028/rd.lboro.15363474
title: Supplementary Information Files for Current trends in flow cytometry automated data analysis software

description: Supplementary Information Files for Current trends in flow cytometry automated data analysis software<br>Automated flow cytometry (FC) data analysis tools for cell population identification and characterisation are increasingly being used in academic, biotechnology, pharmaceutical and clinical laboratories. Development of these computational methods are designed to overcome reproducibility and process bottleneck issues in manual gating, however the take-up of these tools remains (anecdotally) low.Here, we performed a comprehensive literature survey of state-of-the-art computational tools typically published by research, clinical, and biomanufacturing laboratories for automated FC data analysis and identified popular tools based on literature citation counts. Dimensionality reduction methods ranked highly, such as generic t-distributed stochastic neighbour embedding (t-SNE) and its initial Matlab based implementation for cytometry data viSNE. Software with graphical user interfaces also ranked highly, including PhenoGraph, SPADE1, FlowSOM and Citrus, with unsupervised learning methods outnumbering supervised learning methods, and algorithm type popularity spread across K-Means, hierarchical, density-based, model-based, and other classes of clustering algorithms.Additionally, to illustrate the actual use typically within clinical spaces alongside frequent citations, a survey issued by UK NEQAS Leucocyte Immunophenotyping to identify software usage trends among clinical laboratories was completed. The survey revealed 53% of laboratories have not yet taken up automated cell population identification methods, though amongst those that have, Infinicyt software is the most frequently identified. Survey respondents considered data output quality to be the most important factor when using automated FC data analysis software, followed by software speed and level of technical support.This review found differences in software usage between biomedical institutions, with tools for discovery, data exploration and visualisation more popular in academia, whereas automated tools for specialised targeted analysis that apply supervised learning methods were more used in clinical settings.
DOI: 10.17028/rd.lboro.15363474.v1
title: Supplementary Information Files for Current trends in flow cytometry automated data analysis software

description: Supplementary Information Files for Current trends in flow cytometry automated data analysis software<br>Automated flow cytometry (FC) data analysis tools for cell population identification and characterisation are increasingly being used in academic, biotechnology, pharmaceutical and clinical laboratories. Development of these computational methods are designed to overcome reproducibility and process bottleneck issues in manual gating, however the take-up of these tools remains (anecdotally) low.Here, we performed a comprehensive literature survey of state-of-the-art computational tools typically published by research, clinical, and biomanufacturing laboratories for automated FC data analysis and identified popular tools based on literature citation counts. Dimensionality reduction methods ranked highly, such as generic t-distributed stochastic neighbour embedding (t-SNE) and its initial Matlab based implementation for cytometry data viSNE. Software with graphical user interfaces also ranked highly, including PhenoGraph, SPADE1, FlowSOM and Citrus, with unsupervised learning methods outnumbering supervised learning methods, and algorithm type popularity spread across K-Means, hierarchical, density-based, model-based, and other classes of clustering algorithms.Additionally, to illustrate the actual use typically within clinical spaces alongside frequent citations, a survey issued by UK NEQAS Leucocyte Immunophenotyping to identify software usage trends among clinical laboratories was completed. The survey revealed 53% of laboratories have not yet taken up automated cell population identification methods, though amongst those that have, Infinicyt software is the most frequently identified. Survey respondents considered data output quality to be the most important factor when using automated FC data analysis software, followed by software speed and level of technical support.This review found differences in software usage between biomedical institutions, with tools for discovery, data exploration and visualisation more popular in academia, whereas automated tools for specialised targeted analysis that apply supervised learning methods were more used in clinical settings.
DOI: 10.7284/134159
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN638 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134174
title: Anemometer data collected during research cruise EN638 using a Gill Windsonic instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134176
title: Anemometer data collected during research cruise EN638 using a Gill Windsonic instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134160
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN638 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134158
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN638 using a Ashtech ADU2 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7910/dvn/rejhz8
title: SKParl: Corpus of Parliamentary Debates of the National Council of the Slovak Republic

description: The repository contains an original corpus of Parliamentary Debates of the National Council of the Slovak Republic. In its current form, it covers the last three complete terms (5th, 6th, and 7th) mapping a decade of parliamentary discussions in Slovakia (2010-07-08 – 2020-02-26). The corpus contains 140 263 speeches accompanied by available meta information on both the collected speeches and their authors (see codebook). All data are collected from the official website of the National Council of the Slovak Republic.
DOI: 10.7284/134167
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN638 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134168
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN638 using a Furuno GP-33 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134170
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN638 using a Ashtech ADU5 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134161
title: Gyrocompass data collected during research cruise EN638 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134162
title: Gyrocompass data collected during research cruise EN638 using a Sperry MK-37 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134166
title: Meteorological Station data collected during research cruise EN638 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134163
title: Radiometer data collected during research cruise EN638 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134164
title: Radiometer data collected during research cruise EN638 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition