cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.jeac2c
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Favonius cognatus",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 48 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197026-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6scdb5
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hemigraphis hirta (Vahl) T.Anderson"
 ]
}

 The dataset includes 51 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240471-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8f8aev
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chorsia noloides (Butler, 1879)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197028-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqbqgg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Graciemoriana gracieae (Morillo) Morillo)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288243-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kk8uy7
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Maianthemum robustum (Makino & Honda) LaFrankie",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 61 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197027-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdvvs9
title: Occurrence Download

description: A dataset containing 457462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urtica dioica L.",
 "Year 1970-2000"
 ]
}

 The dataset includes 457462 records from 638 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006589-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn7urv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrobium dearei Rchb.f.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197045-220831081235567/datasets/export for details.
DOI: 10.15468/dl.4xrw2g
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strobilanthes alternata (Burm.fil.) Moylan ex J.R.I.Wood"
 ]
}

 The dataset includes 517 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0240459-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jtywz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Brunei Darussalam",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018573-250914085247600/datasets/export for details.
DOI: 10.15468/dl.6srekg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Burkina Faso",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018575-250914085247600/datasets/export for details.
DOI: 10.15468/dl.e9wz3t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Teskeyostrea weberi",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018576-250914085247600/datasets/export for details.
DOI: 10.48338/vu01-5p4kod
title: Harvesting Uncertainty 

description: The data in this file is used for analysis in the dissertation entitled 'Harvesting Uncertainty'. It consists of photos, 152 interviews, and a codebook comprising 10,000 codes. The data have been collected ethnographically through multiple field entries in Indonesia.
DOI: 10.5281/zenodo.17153130
title: supplementary videos for "Tunable electrokinetic motion" manuscript
DOI: 10.5281/zenodo.17153131
title: supplementary videos for "Tunable electrokinetic motion" manuscript
DOI: 10.15468/dl.5ggb38
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018577-250914085247600/datasets/export for details.
DOI: 10.15468/dl.k6dtbd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Ethiopia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018578-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17159516
title: GreenInformationFactory – Processed Data, Model & Performance

description: Train/test splits, trained model, and evaluation figure generated by the GreenInformationFactory pipeline. Raw data: 10.5281/zenodo.16256961.
DOI: 10.5281/zenodo.17159517
title: GreenInformationFactory – Processed Data, Model & Performance

description: Train/test splits, trained model, and evaluation figure generated by the GreenInformationFactory pipeline. Raw data: 10.5281/zenodo.16256961.
DOI: 10.5281/zenodo.17135804
title: Dataset of Retrieved Studies, Screening Decisions, and Exclusion Reasons for Literature Review on Pain Assessment using Physiological Signals

description: This dataset contains the bibliographic records and screening information collected during the literature review on Pain Assessment Using Physiological Signals.



Search results: All studies retrieved from the database search strategy for each of the databases used (Scopus, Embase, PubMed and Web of Science).

Screening dataset: Records of included and excluded studies, with documented reasons for exclusion at each stage.

Purpose: Provides transparency of the study selection process in line with PRISMA guidelines and enables reproducibility of the review.


The dataset is provided in Excel format and can be used by other researchers for verification, meta-research, or as a resource for future systematic reviews on this topic.
DOI: 10.5281/zenodo.17135805
title: Dataset of Retrieved Studies, Screening Decisions, and Exclusion Reasons for Literature Review on Pain Assessment using Physiological Signals

description: This dataset contains the bibliographic records and screening information collected during the literature review on Pain Assessment Using Physiological Signals.



Search results: All studies retrieved from the database search strategy for each of the databases used (Scopus, Embase, PubMed and Web of Science).

Screening dataset: Records of included and excluded studies, with documented reasons for exclusion at each stage.

Purpose: Provides transparency of the study selection process in line with PRISMA guidelines and enables reproducibility of the review.


The dataset is provided in Excel format and can be used by other researchers for verification, meta-research, or as a resource for future systematic reviews on this topic.
DOI: 10.15468/dl.tyg272
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018579-250914085247600/datasets/export for details.
DOI: 10.15468/dl.vjsqmm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Undulostrea megodon",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018580-250914085247600/datasets/export for details.
DOI: 10.5281/zenodo.17157995
title: GWC FCS10

description: The GWC FCS10 (Global 10m Wetland City with Fine Classification System) is the first global dynamic land cover product specifically designed to support the Ramsar Wetland City accreditation and evaluation process. The dataset provides 10m spatial resolution mapping of urban wetland and non-wetland areas, spanning the period from 2016 to 2024, with updates released biennially. The dataset adopts a fine-scale classification system consisting of 16 urban wetland sub-types and 5 non-wetland types. The overall accuracy of the initial classification reaches 94.96 ± 0.5%, while the accuracy of wetland sub-classification achieves 94.69%.

Production follows a hierarchical subdivision and year-by-year optimization strategy. First, based on spectral separability among land cover types, Sentinel-1 and Sentinel-2 imagery are integrated within an object-based classification framework to extract nine initial classes: four wetland categories (marsh, swamp, mudflat, and water) and five non-wetland categories (cropland, forest, grassland, impervious surfaces, and bare land). Building upon the four wetland classes, a stepwise refinement procedure is applied—incorporating POI sample distributions, geometric characteristics, coastal vs. inland distinctions, and inundation frequency rules—to further extract wetland sub-types and to delineate the “ocean” class as a distinct non-wetland type. For each period, initial classification is conducted using a random forest classifier enhanced with feature selection and hyperparameter optimization. Results are then progressively refined through a geometry-similarity-based hierarchical inheritance method, enabling consistent temporal and spatial classification.
DOI: 10.5281/zenodo.17157996
title: GWC FCS10

description: The GWC FCS10 (Global 10m Wetland City with Fine Classification System) is the first global dynamic land cover product specifically designed to support the Ramsar Wetland City accreditation and evaluation process. The dataset provides 10m spatial resolution mapping of urban wetland and non-wetland areas, spanning the period from 2016 to 2024, with updates released biennially. The dataset adopts a fine-scale classification system consisting of 16 urban wetland sub-types and 5 non-wetland types. The overall accuracy of the initial classification reaches 94.96 ± 0.5%, while the accuracy of wetland sub-classification achieves 94.69%.

Production follows a hierarchical subdivision and year-by-year optimization strategy. First, based on spectral separability among land cover types, Sentinel-1 and Sentinel-2 imagery are integrated within an object-based classification framework to extract nine initial classes: four wetland categories (marsh, swamp, mudflat, and water) and five non-wetland categories (cropland, forest, grassland, impervious surfaces, and bare land). Building upon the four wetland classes, a stepwise refinement procedure is applied—incorporating POI sample distributions, geometric characteristics, coastal vs. inland distinctions, and inundation frequency rules—to further extract wetland sub-types and to delineate the “ocean” class as a distinct non-wetland type. For each period, initial classification is conducted using a random forest classifier enhanced with feature selection and hyperparameter optimization. Results are then progressively refined through a geometry-similarity-based hierarchical inheritance method, enabling consistent temporal and spatial classification.
DOI: 10.5281/zenodo.17159498
title: The Effect Of Influencer Marketing Credibility And Interactivity On Makeup Product Purchase Intention And Behavior Among Female Consumers Aged 20-35 Years
DOI: 10.5281/zenodo.17159499
title: The Effect Of Influencer Marketing Credibility And Interactivity On Makeup Product Purchase Intention And Behavior Among Female Consumers Aged 20-35 Years
DOI: 10.15468/dl.8as4ru
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Guatemala",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018581-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8pua5
title: Occurrence Download

description: A dataset containing 6153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6153 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018582-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15543297
title: Zenodo_DrosophilaSuzukii
DOI: 10.5281/zenodo.17159329
title: Zenodo_DrosophilaSuzukii
DOI: 10.5281/zenodo.13643590
title: PDAC cells vs Immune cells perfusion tracking dataset

description: This dataset contains tracking results of PDAC (AsPC1, MiaPaca, and Panc10) and immune cells (Mononucleated cells and neutrophils) perfused on endothelial monolayer under physiological flow speeds and with or without IL-1β treatment. Imaged using brightfield microscopy using a Nikon Eclipse Ti2-E microscope and 20x objective.

Perfused cells from the generated videos were segmented using custom Stardist models. Tracking was performed using TrackMate, and tracking results were analyzed using a custom CellTracksColab notebook. 

The dataset here contains the CSV files generated by TrackMate (Track and Spots information), the tracking data stored in the CellTracksColab format (Analysis.zip), and the analysis output used in the paper (Analysis.zip). It also contains the segmented images of the endothelial cell-cell junctions and nuclei (Landmark.zip).

Specifications





Sample information






PDAC (AsPC1, MiaPaca, and Panc10) and immune cells (Mononucleated cells and neutrophils) perfused on HUVEC cells under physiological flow speeds: 400 µm/s (p1), 200 µm/s (p2), 100 µm/s (p3) and 400 µm/s (p4). 




Control and IL-1β treated (10 ng/ml for 2 h) HUVEC monolayer





Imaging specs






Microscope: Nikon Eclipse Ti2-E, 20x objective




Data Type: Brightfield microscopy images (16-bit)




Image Size: 1024 x 1022 pixels (Pixel size: 650 nm)




Recording speed 25 frames/s





DL models:






Cancer cells: https://doi.org/10.5281/zenodo.10572122 




Neutrophils: https://doi.org/10.5281/zenodo.10572231




Mononucleated cells: https://doi.org/10.5281/zenodo.10572200




Model Training and predictions: Conducted using ZeroCostDL4Mic (https://github.com/HenriquesLab/ZeroCostDL4Mic/wiki)





Tracking parameters (TrackMate):






Detection: label detector




Tracking: Simple LAP detector 






Cancer cells: Linking max distance: 15 px; Gap-closing max distance: 15 px; Gap-closing max frame gap: 2. Track filtering: min number of spots in the tracks 7.74 




Immune cells: Linking max distance: 15 px; Gap-closing max distance: 15 px; Gap-closing max frame gap: 4. Track filtering: min number of spots in the tracks 11.79 






Tracking analysis






Tracks were analyzed using a customized CellTracksColab notebook (https://github.com/CellMigrationLab/PDAC_DL/tree/main/CellTracksColab)




Contents of the repository





Analysis.zip




Landmark.zip




As_Ctrl.zip




As_IL1b.zip




Mia_IL1b.zip




Mia_Ctrl.zip




P10_ctrl.zip




P10_IL1b.zip




Mon_ctrl.zip




mon_IL1b.zip




Neu_ctrl.zip




neu_IL1b.zip



 



Reference

Fast label-free live imaging reveals key roles of flow dynamics and CD44-HA interaction in cancer cell arrest on endothelial monolayers


Gautier Follain, Sujan Ghimire, Joanna W. Pylvänäinen, Monika Vaitkevičiūtė, Diana Wurzinger, Camilo Guzmán, James RW Conway, Michal Dibus, Sanna Oikari, Kirsi Rilla, Marko Salmi, Johanna Ivaska, Guillaume Jacquemet

bioRxiv 2024.09.30.615654; doi: https://doi.org/10.1101/2024.09.30.615654
DOI: 10.15468/dl.539mba
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bauhinia purpurea",
 "Country is Iraq",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018584-250914085247600/datasets/export for details.
DOI: 10.15468/dl.utck4v
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aequipecten flabellum",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is one of (Absent)"
 ]
 }
 }
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018583-250914085247600/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18758/71021035
title: CCI Total Ozone Column Data from GOME-2B

description: The CCI level-2 total ozone Essential Climate Variable product contains harmonized total ozone vertical column densities retrieved from a number of nadir space sensors using the GODFIT v4 algorithm. 

The present data set provides ozone total columns as well geophysical information for ground pixels observed by the Global Ozone Monitoring Experiment-2 (GOME-2, aboard the METOP-B satellite; descending node equator crossing time: circa 09:30 hrs local time) for the period January 2013 onwards. 

The product also contains diagnostic metrics such as the results of the spectral fit, averaging kernel, a priori profiles, cloud information, and algorithm and product uncertainty estimates. 
Size: 5 MB per orbit
DOI: 10.5883/bold:abv9334
title: Overview of Barcode Index Number - BOLD:ABV9334

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9336
title: Overview of Barcode Index Number - BOLD:ABV9336

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9338
title: Overview of Barcode Index Number - BOLD:ABV9338

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9343
title: Overview of Barcode Index Number - BOLD:ABV9343

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9347
title: Overview of Barcode Index Number - BOLD:ABV9347

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9349
title: Overview of Barcode Index Number - BOLD:ABV9349

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9353
title: Overview of Barcode Index Number - BOLD:ABV9353

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9359
title: Overview of Barcode Index Number - BOLD:ABV9359

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9360
title: Overview of Barcode Index Number - BOLD:ABV9360

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9364
title: Overview of Barcode Index Number - BOLD:ABV9364

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9368
title: Overview of Barcode Index Number - BOLD:ABV9368

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9379
title: Overview of Barcode Index Number - BOLD:ABV9379

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9390
title: Overview of Barcode Index Number - BOLD:ABV9390

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9391
title: Overview of Barcode Index Number - BOLD:ABV9391

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:abv9412
title: Overview of Barcode Index Number - BOLD:ABV9412

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.