cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1133617.10fu
title: SH1133617.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133621.10fu
title: SH1133621.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1133624.10fu
title: SH1133624.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.z3k8td
title: Occurrence Download

description: A dataset containing 1311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Neopanax arboreus (Murray) Allan",
 "Year 2010-2020"
 ]
}

 The dataset includes 1311 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003327-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcteep
title: Occurrence Download

description: A dataset containing 2012 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.19_1",
 "TaxonKey is Artemisia L."
 ]
}

 The dataset includes 2012 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003328-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15142195
title: Table 1. Pairwise distances using 16 S in Redescription of a rarely encountered species Travisa chinensis Grube, 1869 (Annelida, Travisiidae), including a description of a new species of Travisa from Amoy, China

description: Table 1. Pairwise distances using 16S within and among species of Travisia: values in the lower left corner were based on the Kimura2-parameter, and in the upper right corner were based on the p -distance model. Note: red numbers indicate the intraspecific genetic distance (p -distance and Kimura2-parameter show similar value).
Species of TravisiaN12345671T. amoyanus sp. nov.50.0010.1700.1710.1790.1670.1620.1542T. zieglerae210.1950.0010.0010.0580.1320.1720.1513Travisia sp.100.1970.0010.0010.0600.1360.1720.1554Travisia sp. NHM 124420.2070.0610.0630.0010.1090.1530.1445T. pupa10.1910.1460.1510.118n/c0.1530.1276T. sanrikuensis30.1860.1980.1990.1720.1740.0060.0327T. brevis10.1750.1700.1750.1600.1400.033n/c
description: Published as part of Yang, Deyuan, Wu, Xuwen, Wang, Zhi, Zhao, Xiaoyu, Hwang, Jiangshiou & Cai, Lizhe, 2022, Redescription of a rarely encountered species Travisa chinensis Grube, 1869 (Annelida, Travisiidae), including a description of a new species of Travisa from Amoy, China, pp. 1 in ZooKeys 1128 on page 1, DOI: 10.3897/zookeys.1128.90020
DOI: 10.5281/zenodo.15142196
title: Table 1. Pairwise distances using 16 S in Redescription of a rarely encountered species Travisa chinensis Grube, 1869 (Annelida, Travisiidae), including a description of a new species of Travisa from Amoy, China

description: Table 1. Pairwise distances using 16S within and among species of Travisia: values in the lower left corner were based on the Kimura2-parameter, and in the upper right corner were based on the p -distance model. Note: red numbers indicate the intraspecific genetic distance (p -distance and Kimura2-parameter show similar value).
Species of TravisiaN12345671T. amoyanus sp. nov.50.0010.1700.1710.1790.1670.1620.1542T. zieglerae210.1950.0010.0010.0580.1320.1720.1513Travisia sp.100.1970.0010.0010.0600.1360.1720.1554Travisia sp. NHM 124420.2070.0610.0630.0010.1090.1530.1445T. pupa10.1910.1460.1510.118n/c0.1530.1276T. sanrikuensis30.1860.1980.1990.1720.1740.0060.0327T. brevis10.1750.1700.1750.1600.1400.033n/c
description: Published as part of Yang, Deyuan, Wu, Xuwen, Wang, Zhi, Zhao, Xiaoyu, Hwang, Jiangshiou & Cai, Lizhe, 2022, Redescription of a rarely encountered species Travisa chinensis Grube, 1869 (Annelida, Travisiidae), including a description of a new species of Travisa from Amoy, China, pp. 1 in ZooKeys 1128 on page 1, DOI: 10.3897/zookeys.1128.90020
DOI: 10.15151/esrf-es-2019878519
title: FInnish National Protein Crystallography Consortium

description: The Finnish BAG encompasses 24 groups active in crystallography in Finland. The projects vary widely and include membrane proteins and protein complexes, other proteins involved in disease and antibiotics and drug development and discovery (ADP-ribosylation and several oncogenic proteins including kinases, biocatalysis, endoplasmic regulation and protein secretion) and several pathogen proteins and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin dynamics regulation as well as membrane protein targets. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options, others benefit from quick robust screening by MASSIF.
DOI: 10.15151/esrf-es-2108319284
title: Scientific projects of the IBS synchrotron group

description: We study the structures of a broad diversity of macromolecules from fluorescent to metabolic proteins. One of our primary focus is on solving the 3D structures of enzymes within the MEP pathway, as they represent promising drug targets. Additionally, we are engaged in characterizing new fluorescent proteins derived for instance from bacteriophytochrome. Our research activities also include the development of instrumentation and methodologies, spanning from crystallization to room temperature data collection. We strive to enhance crystal quality for both X-ray and neutron diffraction. Furthermore, we conduct high-throughput screening (HTS) of chemical libraries to identify active ligands targeting proteins with pharmaceutical relevance.
DOI: 10.15151/esrf-es-2036722752
title: Bridging the gap between cellular and whole body imaging using Hierarchical Phase-Contrast Tomography: HiP-CT

description: Humans and other large organisms are three-dimensional multiscale biological systems where large scale function and structure are dependent on the macrostructure’s interconnectivity down to the cellular and subcellular level. Using the exceptional coherence provided by the ESRF-EBS, we have demonstrated that propagation-based phase-contrast can effectively decouple resolution from specimen size in soft tissue, obtaining 1.4 micron voxel resolution in 150 mm diameter human organs. Through this Long Term Proposal (LTP) we will develop the techniques required to image whole human and animal bodies ex vivo at 25 micron resolution, zooming to sub-micron voxels (0.7micron) locally, resolving sub-cellular structures through hard- and soft-tissue. Resolving how the micro (sub-cellular) interacts with the macro (whole organism) across length scales will provide all new insights into biological and biomedical function. This is true for both healthy and pathological system level behaviour.
DOI: 10.15151/esrf-es-2032075215
title: Phase Contrast computed tomography to characterize rat brain tumors after ultrasound-enhanced chemo-radiotherapy

description: Glioblastoma (GBM) is the most common and aggressive primary brain tumour. Due to the chemoresistance and highly infiltrative growth of GBM, current treatments can only slow the development of the disease. The main limit to the effectiveness of chemotherapies in the brain is their restricted access due to the presence of the blood brain barrier (BBB), which limits the passage of most drugs. Recently, focused ultrasound (FUS) in combination with microbubbles, has attracted attention as a non-invasive means of temporarily opening the BBB (1). X-ray Phase Contrast Computed Tomography (XPCT) is a powerful imaging technique for post mortem radiation treatment evaluation on brain samples. In this study, we propose to investigate the potential of XPCT to measure the impact of blood-brain barrier opening by US and chemoradiotherapy treatments on post-mortem samples from F98 glioma-bearing rats, in particular on the micro vessels architecture.
DOI: 10.15151/esrf-es-2032075878
title: Investigating the crystallization kinetics and morphology development in fibre reinforced polymer (FRP) composites for automotive applicatio

description: The development of sustainable structural materials offering lightweighting potential addressing the environmental challenges of reducing CO2 emissions in the automotive industry, is needed. Fibre-reinforced polymer composites (FRPs) are light cost-effective materials giving directional strength, stiffness, durability and corrosion resistance. FRP candidate materials are semi-crystalline engineering polymers, e.g. polyamides (PA) combined with long glass fibres (PA-GF). Here, we will look at the structure morphology development in FRP materials using combined in-situ thermal and small and wide-angle X-ray scattering. This will allow us to follow the polymers crystalline structure development during cooling at temperatures mimicking industrial processing conditions, giving a unique insight into how processing affects the polymer morphology, mechanical and physical properties of the composite.
DOI: 10.15151/esrf-es-2032089619
title: XES determination of the electronic structure of the over-oxidized form of the Hydrogenophilus thermoluteolus hydrogenase

description: Here we propose to measure Ni K-beta X-ray emission spectroscopy and XAS to unambiguously assign the electronic structure to a recently reported oxygen-protected state of the hyperthermophile hydrogenase from Hydrogenophilus thermoluteolus (HtSH). Although the crystal structure of this state indicates an unusual coordination of the Ni with three bridging cysteine residues and a terminal bidentate glutamate, two possible electronic structures have been proposed, a closed-shell singlet with a Ni(IV) and a Fe(II) at the active site, and an antiferromagnetically coupled open-shell singlet with a Ni(III) and an oxidized Fe(III). The proposed spin selective XES measurements should provide definitive evidence to assign the correct electronic structure.
DOI: 10.15151/esrf-es-2032089763
title: XRD of gold and platinum to above 600 GPa.

description: The aim of this proposal is to extend XRD measurements of Au and Pt from 150 GPa to above 600 GPa under hydrostatic conditions using a Ne pressure-transmitting medium in a toroidal DAC. Simultaneous determination of the volumes of these three elements at various pressures will be useful to test and potentially refine the recently proposed calibration of gold and platinum, based on shockless compression experiments, as standards up to 1 TPa. Platinum is expected to remain in the fcc structure up to 1 TPa. While a sequence of fcc-hcp-bcc phase transitions has been predicted for gold, the transition pressures remain debated. Here, we expect to unambiguously observe the fcc-hcp transition by reaching slightly above 600 GPa. Finally, this data set will allow for a critical assessment of XRD measurements of these two elements under nanosecond compression, the current approach used to investigate the atomic structure of matter at TPa pressures.
DOI: 10.15151/esrf-es-2035891807
title: Investigation of local inhomogeneous strain development affected by 3D grain structure in aluminium alloy during tensile deformation

description: The goal of this research is to obtain direct evidence related to the initial grain microstructure and the development of local strain (notably strain concentration) in particle-containing Al alloys through the application of non-destructive synchrotron radiation techniques. This proposal proposes a novel, multiscale, and multimodal strategy by combining these sophisticated methodologies, an endeavor yet to be pursued in this field. Specifically, we aim to measure local strains by analyzing the 3D displacement of second phase particles observed through absorption micro-tomography (micro-CT) during tensile tests. Our novel method for microstructural features tracking will be utilized in detailed 3D strain mapping analysis. Furthermore, 3D grain microstructures before and during tensile deformation will be characterized using diffraction contrast tomography (DCT) and scanning 3DXRD (s-3DXRD) developed at the ESRF.
DOI: 10.15151/esrf-es-2039921211
title: The European Battery Hub

description: This project is the continuation of the Battery Pilot Hub (MA4929), a pioneer initiative at ESRF designed to achieve large-scale synchrotron-based correlative characterization of battery materials (2021-24). The European Battery Hub is the demonstrator of this new community-driven approach, where we will develop, expand and deploy integrated workflows to resolve scientific challenges towards more sustainable battery technologies. We will focus on Na-ion Batteries and All Solid State Batteries, while ensuring transferability of methods to other systems. The Hub will provide a holistic understanding of reaction and degradation mechanisms by pushing the frontiers of time and space resolution thanks to the exceptional coherence and brilliance of the X-rays at ESRF. Six core beamlines are identified to realize the program (ID31, ID13, BM32, ID16b, ID20, ID26), where novel set-ups, sample environments, interoperable cells, common data handling protocols and pipelines will be developed.
DOI: 10.15151/esrf-es-2064080513
title: Exploring the Phase Diagram of the Palladium Hydrogen System using Bragg Coherent Diffraction Imaging

description: The goal of this study is to observe the structural evolution of single palladium nanocrystals during hydrogen absorption and desorption in rarely explored regions of the phase diagram. The Pd-H system is extremely interesting for its capability to uptake large amount of hydrogen into interstitial sites with an accompanying lattice expansion. There exist several phenomena that have not been observed in single nanocrystals such as high temperature and pressure absorption, and absorption in the supercritical phase. As well as more exotic phenomena such as spinodal decomposition that is posited to exist in small single crystals. Using Bragg Coherent Diffraction Imaging (BCDI) we are able to follow in-situ the evolution of the internal and surface strain in individual nanoparticles.
DOI: 10.15468/dl.94fzuq
title: Occurrence Download

description: A dataset containing 1516 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Podocarpus totara G.Benn. ex D.Don",
 "Year 2010-2020"
 ]
}

 The dataset includes 1516 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003329-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bvcczz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Genaparlatoria pseudaspidiotus MacGillivray, 1921",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003332-250402121839773/datasets/export for details.
DOI: 10.15468/dl.aegs5t
title: Occurrence Download

description: A dataset containing 688 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'CN'
 AND (occurrence.level0gid = 'CHN.19_1' OR occurrence.level1gid = 'CHN.19_1' OR occurrence.level2gid = 'CHN.19_1' OR occurrence.level3gid = 'CHN.19_1')
 AND (occurrence.taxonkey = 3120641 OR occurrence.acceptedtaxonkey = 3120641 OR occurrence.kingdomkey = 3120641 OR occurrence.phylumkey = 3120641 OR occurrence.classkey = 3120641 OR occurrence.orderkey = 3120641 OR occurrence.familykey = 3120641 OR occurrence.genuskey = 3120641 OR occurrence.specieskey = 3120641)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 688 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003321-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wkr3v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fiorinia japonica Kuwana, 1902",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003331-250402121839773/datasets/export for details.
DOI: 10.5281/zenodo.15142227
title: Table 1 in Two new species of the dwarf centipede genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 (Chilopoda, Geophilomorpha, Mecistocephalidae) from Japan

description: Table 1. The list of primers used in the present study.
GenesPrimer nameSequence (5' - 3')SourceCOILCO-CHTTT CAA CAA AYC AYA AAG ACA TYG GTsukamoto et al. (2021)HCO-CHTAA ACT TCT GGR TGR CCR AAR AAT CA16S rRNA16SaCGC CTG TTT ATC AAA AAC ATXiong and Kocher (1991)16SbiCTC CGG TTT GAA CTC AGA TCA28S rRNA28S D1FGGG ACT ACC CCC TGA ATT TAA GCA TBoyer and Giribet (2007)28S rD4bCCT TGG TCC GTG TTT CAA GACEdgecombe and Giribet (2006)
description: Published as part of Tsukamoto, Sho, Shimano, Satoshi & Eguchi, Katsuyuki, 2022, Two new species of the dwarf centipede genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 (Chilopoda, Geophilomorpha, Mecistocephalidae) from Japan, pp. 117 in ZooKeys 1115 on page 117, DOI: 10.3897/zookeys.1115.83946
DOI: 10.5281/zenodo.15142228
title: Table 1 in Two new species of the dwarf centipede genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 (Chilopoda, Geophilomorpha, Mecistocephalidae) from Japan

description: Table 1. The list of primers used in the present study.
GenesPrimer nameSequence (5' - 3')SourceCOILCO-CHTTT CAA CAA AYC AYA AAG ACA TYG GTsukamoto et al. (2021)HCO-CHTAA ACT TCT GGR TGR CCR AAR AAT CA16S rRNA16SaCGC CTG TTT ATC AAA AAC ATXiong and Kocher (1991)16SbiCTC CGG TTT GAA CTC AGA TCA28S rRNA28S D1FGGG ACT ACC CCC TGA ATT TAA GCA TBoyer and Giribet (2007)28S rD4bCCT TGG TCC GTG TTT CAA GACEdgecombe and Giribet (2006)
description: Published as part of Tsukamoto, Sho, Shimano, Satoshi & Eguchi, Katsuyuki, 2022, Two new species of the dwarf centipede genus Nannarrup Foddai, Bonato, Pereira & Minelli, 2003 (Chilopoda, Geophilomorpha, Mecistocephalidae) from Japan, pp. 117 in ZooKeys 1115 on page 117, DOI: 10.3897/zookeys.1115.83946