cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/zynpkq
title: transfR: Transfer of Hydrograph from Gauged to Ungauged Catchments. R package version 1.0.11

description: A geomorphology-based hydrological modelling for transferring streamflow measurements from gauged to ungauged catchments. Inverse modelling enables to estimate net rainfall from streamflow measurements following Boudhraâ et al. (2018) . Resulting net rainfall is then estimated on the ungauged catchments by spatial interpolation in order to finally simulate streamflow following de Lavenne et al. (2016) .
DOI: 10.57745/xgjdwh
title: Replication data for the Ecology Work Package of the INOTOP project

description: This dataset includes fish length and isotopic data associated with the following paper published in "Restoration Ecology": "Aquatic food webs in restored marshes: a stable-isotope approach in the Gironde estuary (SW France)"
DOI: 10.57745/xkn6nc
title: hubeau: an R package for the Hub'Eau APIs

description: 'hubeau' is an R-package proposing a collection of function to help retrieve data from the French national databases on water: https://hubeau.eaufrance.fr
DOI: 10.57745/xwlwcj
title: Transcripts containing Minc telomeric repeats and their matches on the genome

description: We assembled the transcriptomes of four M. incognita developmental life stages RNA-seq datasets using TRINITY. W= egg, J2= pre-parasitic second stage juveniles, J3= a mix of J3 and J4 endophytic staged, F= adult female. We searched for the presence of the motifs constituting the Minc telomeric repeat. Transcripts that contained at least one of the 3 Minc telomeric motifs were mapped to the genome using GMAP.
DOI: 10.57745/y3jltv
title: Dataset associated to "Enhanced database creation with in silico workflows for suspect screening of unknown tebuconazole transformation products in environmental samples by UHPLC-HRMS"

description: This dataset gather data files and script that are related to the creation of a database for suspect screening analysis of 291 transformation products (TPs) of tebuconazole, assisted by in silico workflows. There are several types of files: (1) The enhance created database itself, in .csv format ; (2) All structures of TPs of the database in one file, in the in .sdf format ; (3) Structure of each TPs of the database in differents .mol files, compressed in a .zip file. ; (4) A compilation of the scripts used for the database creation, in .rmd format.
DOI: 10.57745/zf6rxa
title: Projections hydrologiques souterraines en région Bretagne : Résultats du modèle EROS-Bretagne

description: Le modèle EROS-Bretagne simule les débits en rivière au droit de 96 stations hydrométriques et les niveaux de nappe au droit de 41 piézomètres à l’échelle de la Bretagne. Les indicateurs utilisés pour évaluer l’impact du changement climatique sur l’évolution des niveaux de nappe se basent sur le calcul de niveaux piézométriques moyens annuels et saisonniers, sur le calcul de tendances à long termes, et enfin sur l’occurrence d’évènements extrêmes. Les impacts sont déterminés en agrégeant ces indicateurs sur des périodes de 30 ans et en comparant trois horizons temporels futurs (2021-2050, 2041-2070 et 2070-2099) à une période de référence historique (1976-2005).
DOI: 10.57745/wrktll
title: Jeu de données plan de relance ANR Optimyss

description: Aging represents a natural and unavoidable phenomenon in organisms. With the acceleration of population aging, investigations into aging have garnered widespread global interest. One of the most striking aspects of human aging is the decline in brain function, a phenomenon intricately tied to the onset of neurodegenerative conditions. This study aimed to assess the impact of a fish hydrolysate, rich in low-molecular-weight peptides and n-3 LC-PUFAs, on cognitive function, inflammatory response, and oxidative stress via the AGE-RAGE axis in a mouse model of accelerated aging. This model induces cognitive decline and biochemical alterations akin to those observed during natural aging. The findings revealed that fish hydrolysate exhibited a protective effect against cognitive impairment induced by D-galactose. This effect was associated with increased protein expression of SOD1 and decreased genetic expression of IL-6 and advanced glycation end products (AGE). Consequently, within the realm of preventive and personalized nutrition, fish hydrolysate emerges as a promising avenue for mitigating age-related declines in memory function.
DOI: 10.57745/wsio0b
title: Module économique pour évaluation de projet maraîcher

description: Ce tableur permet à l’usager d’évaluer un scénario de ferme maraîchère d’un point de vue économique à partir des prévisionnels de vente fournis par la Pépinière-Mesclun, en ligne à https://pepiniere.outils-mesclun.fr Cet outil permet de produire des documents comptables classiques (compte de résultats, plan de financement et bilan des flux de trésorerie). Pour utiliser l'outil il est nécessaire de copier-coller les données de l'onglet "Ventes" issu de l'export en .xslx depuis la Pépinière. Dans le dossier, vous trouverez un tableur vierge à remplir et un tableur avec un exemple concret qui permet de mieux saisir le fonctionnement de l'outil. Ne pas hésitez à se faire accompagner dans la réflexion de son projet économique et pour discuter des scénarios !
DOI: 10.57745/xpbklv
title: Predicting the seasonal flight activity of Myzus persicae, the main aphid vector of Virus Yellows in sugar beet

description: This repository includes most of the R scripts and data files required to reproduce the analyses and figures presented in the paper "Predicting the seasonal flight activity of Myzus persicae, the main aphid vector of Virus Yellows in sugar beet" from Luquet et al. 2023 in Pest Management Science. Weather data is missing, as we are not allowed to share them, but the structure of these data is explained. The 'Myzus_persicae_flight_prediction.zip' file contains all the data, metadata and code material as well as a README file explaining the analysis pipeline. The README file ('README.txt') is also included in the main repository.
DOI: 10.57745/yhsdwa
title: Ontology: Impacts of changes in value chains

description: This dataset, composed of a csv file, contains a list of general, intermediate and specialized concepts describing categories of impacts which can be expected from a change in a value chain. These impacts can be of various natures: economic, social, sanitary, environmental, etc. This ontology was created during a study of the French pork value chain. However, the concepts obtained can be considered as reusable for the description of impacts in other value chains.
DOI: 10.57745/z42c4p
title: Guyomarc'h Fanny_EVOLI_mémoire de thèse professionnelle

description: Ce dossier contient mon mémoire de thèse professionnelle au mastère spécialisé économie circulaire et développement durable (Ecole des Métiers de l'Environnement - UniLaSalle), et ses versions.
DOI: 10.57745/z8h3tq
title: Data associed with article « Real‑time spectroscopic ellipsometry of plasmonic nanoparticle growth in polyvinyl alcohol thin films »

description: Experimental data corresponding to the impact of the annealing on the ellipsometric spectra of PVA film containing silver ions for 3 samples (AG1, AG2, and AG3). Fig. 12 correspond to the evolution of the volume fraction of AG1, AG2, and AG3 NPs estimated by spectroscopic ellipsometry and Fig. 13 correspond to the real and imaginary parts of the effective dielectric function spectra of the samples AG1, AG2, and AG3 vs wavelentgth and for different annealing times for AG2.
DOI: 10.57745/z8ttrb
title: Aquatic macroinvertebrate abundance in French experimental polyculture fishponds

description: The dataset contains abundances of aquatic macroinvertebrates measured in six freshwater fishponds in France during the SEPURE project « New strategies to build and manage fish pond systems for a sustainable fish farming » (FEAMP measure 47; 2019). Macroinvertebrates were sampled from March to October 2021 along the banks and in the deep-water zone of each pond. From these abundances, dry biomass and productivity were calculated. The dataset consists of eight sheets: Raw abundance of macroinvertebrates identified to the lowest taxon possible. Stage and size class are also noted. Individual dry biomass per taxon in 8, 4, 2, 1 and 0.5 mm sieves. Weighted dry biomass per sieve per pond. Temperature every 10 minutes at two depths from March to October 2021. Productivity (mg/d) per taxon per sieve for each month of sampling in each pond. Experimental design of the project. Detailed information about how weighted dry biomass and productivity of macroinvertebrates were calculated. Description of variables for the five datasets.
DOI: 10.57745/znuppx
title: Database and R script relative to "Spatial patterns of causality in temperate silvopastoral systems: a perspectives on nitrification stability in response to flooding" by Mettauer et al. (accepted)

description: This database and this script are linked to the article “Spatial patterns of causality in temperate silvopastoral systems: a perspective on nitrification stability in response to flooding” by Mettauer et al. (accepted). It is composed of one csv file with the database where dot is used as decimal and one pdf presenting the R script used to analyze the data.
DOI: 10.57745/zqfss2
title: Climate effect on 4 year BLUP data miscanthus

description: It holds the BLUPs of genotype effects (BLUP_C4_G), interactions of genotype with climatic conditions in 2018 (BLUP_C4_l18) and interactions of genotype with climatic conditions in 2019 (BLUP_C4_l19). It also includes the corresponding QTLs: QTL_C4_G, QTL_C4_l3 and QTL_C4_l4, respectively
DOI: 10.57745/zqzvpd
title: R script for the calculation of t50 (time for half development) of axillary meristem development

description: Script to be used in R
DOI: 10.5281/zenodo.15612250
title: "A function that is provably non-invertible under all computational models"
DOI: 10.5281/zenodo.15612251
title: "A function that is provably non-invertible under all computational models"
DOI: 10.57745/xq3p72
title: Outputs of the mlmm.gwas R package for resistance to six viruses in Cucumber sativus

description: The 6 files correspond to outputs GWAS analysis for resistance to six viruses (CMV, CVYV, CGMMV, WMV, ZYMV and PRSV) incoculated to a panel of 240 to 250 cucumber elites and landrace lines. All lines were sequenced by Illumina short reads and filtered matrixes containing 376,151 to 422,431 SNPs according to the virus studied were generated. Symptom phenotypes were obtained after mechanical inoculation of the viruses and BLUP values were generated for GWAS. GWAS was performed with kinship and population structure with 9 groups. The name of each file starts with of the virus studied. These RDS files were produced using the mlmm.gwas R package.
DOI: 10.57745/yfdxel
title: French_CS_Guide RealLife-Study

description: This Dataset contains 2 files, the guide to conducting interview and the consumers comments collected during interview concerning their experience with the innovative beverage in real life situation
DOI: 10.57745/zhaizy
title: Plan de Gestion de données (PGD) de l'unité SILVA

description: Le plan de gestion de données se présente sous la forme d'un ensemble de fichiers au sein d'une archive zip. La structuration de l'ensemble est inspirée de ce que propose l'outil DMP OPIDOR (https://dmp.opidor.fr/) qui n'a cependant pas été utilisé, le vocabulaire employé étant jugé trop orienté plan de gestion de données pour des projets, les possibilités de mise en forme étant trop pauvres et la factorisation de certaines réponses pour la description de plusieurs sous-ensembles manquant cruellement de souplesse (tout ou rien). Il est donc proposé un premier document présentant les données relevant d'une portée 'unité' (PGD_SILVA_general.docx) puis un second document fournissant les réponses par défaut de l'unité à tout un ensemble de questions qui se prêtent à recevoir une réponse mutualisée (silva_default_general.docx) identique pour un certains nombres de modes opératoires décrits. Enfin une série de documents dont le nom est préfixé par 'pgd_' qui décrivent des modes opératoires en vigueur au sein de l'unité. Ces documents sont corédigés par les Référents Données et les collègues en charge de la gestion des données en s'appuyant sur un modèle de document inspiré des questions du modèle 'PGD de structure' de DMP Opidor. Les réponses apportées peuvent référencer le document silva_default_general.docx ou préciser ce qui caractérise le mode opératoire. A la date de publication 3 modes opératoires sont décrits ce qui constitue la version initiale du PGD qui sera complétée au fil du temps.
DOI: 10.57745/zix3iz
title: Sensory and chemical characterization of dry white wines from Chenin B variety produced in seven protected Designation of Origin in the Loire Valley (France)

description: Aromatic characterization is a key issue in enhancing knowledge of the sensory properties of Chenin Blanc wines. This better understanding could help producers better manage the type of wine produced. In 2016, 60 commercial wines from seven Protected Designations of Origin (PDOs) were analyzed, combining a sensory profile assessment performed by a trained panel of 15 judges with the analysis of 57 Volatile Organic Compounds (VOCs) using GC-MS. Classical physico-chemical analyses were also conducted. This dataset provides a better understanding of the aromatic characteristics of Chenin Blanc wines from the Loire Valley, helps highlight sensory profiles, and identifies the VOCs responsible for aromatic perception. It consists of four .csv files: one file for the sensory data table, one data file for the physico-chemical data table, a table indicating the origin of the wines (production locations, vintage, anonymized producer), and a metadata table providing details on each variable in the dataset.
DOI: 10.57745/zrjuyn
title: Rapport méthodologique pour les produits élaborés CTCPA AGRIBALYSE v3.1 : inventaires produits, procédés et données sur les pertes et le stockage

description: Ce document permet d’apporter les éléments méthodologiques, les périmètres d’application, les perspectives et la qualité des données de l’ensemble des inventaires fournis : - 10 Inventaires de Cycle de Vie complets de produits mis à jour - 1 nouveau produit sur l’ensemble des étapes du cycle de vie - 7 nouveaux inventaires de procédés de transformation des produits appertisés et surgelés pour certaines catégories de produits.
DOI: 10.57745/xwadqj
title: IPMWORKS - Policy recommendation for the Sustainable Use of Pesticides Regulation (SUR)

description: Document elaborated by the IPMWORKS consortium to provide recommendations for the debate on Sustainable Use od Pesticides in Europe
DOI: 10.57745/yejqzq
title: Mice

description: Archive of the projet used by the DeepLabCut software. The model has been trained to analyze videos of mice behaviors.
DOI: 10.57745/zhwqwq
title: APIS: an updated parentage assignment software managing triploids induced from diploid parents

description: Raw data used for all analyses in the paper
DOI: 10.57745/zsum9b
title: Evolution de l’abondance de Pagrus caeruleostictus en Guinée / Guinée-Bissau

description: Le présent document décrit l’utilisation des modèles linéaires généralisés (GLM) pour la création d’indices d’abondance du stock de Pagre (Pagrus Caeruleostictus) en Guinée et Guinée Bissau. Les modèles GLM permettent de prendre en compte les variations de protocole d’échantillonnage dans l’observation des captures des flottilles de pêche concernées. Les données utilisées proviennent, d’une part des campagnes scientifique démersales réalisées dans les deux pays depuis les années 1980, et d’autre part des données de captures et d’effort des pêcheries artisanales maritimes et industrielles disponibles pour les deux pays.
DOI: 10.57745/zsx5m4
title: Insight into the role of gut microbiota in Duchenne muscular dystrophy: an age-related study in mdx mice

description: Jeux de données du séquençage 16S de feces de souris bl10 vs mdx
DOI: 10.57745/zqpnie
title: Projections hydrologiques : Recharge potentielle des aquifères

description: Ce rapport présente les projections de recharge potentielle des aquifères par infiltration des précipitations efficaces obtenues en mettant en œuvre le modèle RECHARGE sur l’ensemble du territoire hexagonal avec, pour données d’entrée, les évolutions climatiques projetées par l’ensemble élaboré et corrigées avec la méthode ADAMONT dans le cadre du projet Explore2.
DOI: 10.57745/z0ph0q
title: A multidimensional dashboard dataset on tropical tuna fishing fleet in Atlantic and Indian Oceans

description: This data includes indicators estimated in a multicriteria dashboard applied to assess sustainability of tropical tuna fisheries in Atlantic and Indian Oceans. The objective of this work was to test a multidimensional approach, accounting for the ecological, economic and social dimensions of fisheries sustainability, with the case study of tropical tuna fishing fleets. This dashboard has been constructed based on bibliography review then calculated annually for all historical period available. The principal data raw sources were Regional Fisheries Management Organisation’s (RFMO) public data for the majority of ecologic indicators and the Data Collection Framework (Regulation (EC) 199/2008) for socio-economic indicators and one ecologic indicator (Fuel use intensity or FUI). 24 indicators (14 ecological, 7 economic and 3 socio-economic) were calculated. According to raw data availability, the majority of ecological indicators were calculated from 1950 to 2020 for 356 fleets in Atlantic and Indian oceans, while FUI, economic and socio-economic indicators were calculated only for the European purse seiners and longliners (French and Spanish) over a shorter period of time (2009-2019) than ecological indicators. Because row data from the Data collection framework were aggregated, a method of desegregation based on the allocation on fishing effort to each ocean, was apply to each fleet segment. This dataset is a tool for monitoring the sustainability performance of tuna fisheries and can be re-used to compare different fishing gears performances, flag practices and for different periods.
DOI: 10.57745/zchker
title: In situ strain and stresses in two phase olivine+antigorite aggregates deformed at subduction zones pressures

description: This dataset comprises strains and stresses measured in situ using synchrotron X rays imaging and diffraction, in two-phase aggregates of olivine + antigorite deformed under subduction zones pressures (several GPa). These two-phase aggregates are a proxy for serpentinized peridotites. Please see the associated publication for discussion on the stress measurements nature and the associated hypotheses.
DOI: 10.57745/zexqui
title: Membrane lipid composition of Carnobacterium maltaromaticum CNCM I-3298, a highly cryoresistant lactic bacterium

description: This dataset concerns the fine lipid analysis of a lactic acid bacterium (Carnobacterium maltaromaticum CNCM I-3298) produced at its optimal activity. The dataset includes the chromatography analysis (TLC, HPLC, GC, SFC) of total lipids of C. maltaromaticum CNCM I-3298, the MS and NMR studies of the structures of neutral lipids, phospholipids and glycolipids of C. maltaromaticum CNCM I-3298 and the statistical analysis of the fatty acid composition of bacteria based on available data in the literature for the period from 1995 to 2022.
DOI: 10.57745/zji3p0
title: Counts of pine processionary moth tents on host trees in the agglomerations of Orléans, Montpellier and La Baule, France

description: The pine processionary moth Thaumetopoea pityocampa (Lepidoptera: Notodontidae) is a defoliating insect associated to conifers The larvae shelter in winter in conspicuous silk tents that are easy to detect. The dataset we present here corresponds to tree characterization and tent counts from 3 agglomerations in France, namely Orléans, Montpellier and La Baule. We provide the raw data characterizing each individual tree, graphs showing the prevalence and mean number of tents for the tree species included in the survey, and maps allowing to locate each tree.
DOI: 10.57745/zv5tj8
title: Data relative to the article : Influence of two agroforestry systems on the nitrification potential in temperate pastures in Brittany, France" (Mettauer et al., accepted)

description: This database is composed by the data mobilized within the article "Influence of two agroforestry systems on the nitrification potential in temperate pastures in Brittany, France" by Mettauer et al. (accepted by Plant and Soil 2023). It is composed of data on soil and vegetation properties, as well as on nitrification potential (PNR), nitrifying bacteria (AOB), Ascomycota and Basidiomycota. The data was collected within two adjacent agroforestry plot associated with temporary grassland of the Britany region, France: one planted with a hedgerow system and one planted with an alleycropping system.
DOI: 10.57745/yulc7v
title: Données d'analyse des trajectoires d'adaptation des agriculteurs interrogés

description: Ce jeu de données a été produit dans le cadre d'une thèse financée par le projet Interreg Clim'Ability Design. L'objectif est d'identifier les pratiques que des agriculteurs mettent en œuvre pour s'adapter aux conséquences du changement climatique dans le Rhin Supérieur (France, Allemagne, Suisse), et de comprendre leur trajectoire vers l'adoption de ces pratiques d'adaptation. Ces données ont été produites à partir d'entretiens semi-directifs avec les producteurs. Elles présentes les caractéristiques des producteurs interrogés, les pratiques d'adaptation mises en œuvre, les motivations et freins et leviers à l'adoption de ces pratiques, et les rôles, limites et freins des réseaux des producteurs dans leurs trajectoires d'adaptation.
DOI: 10.57745/zpbslt
title: Stream diatom worldwide dataset and environmental data

description: This dataset include the data used in the paper entitle "Stream diatom biodiversity in islands and continents – a global perspective on the effects of area, isolation and the environment" published in 2022 in Journal of Biogeography. This dataset is a RData format which include 2 objects: 'comm_tot' and 'env'. 'comm_tot'includes presence-absence of diatom species (Omnidia code) of 5446 sites from 18 islands (Co: Corsica, Cy: Cyprus, Gu: Guadeloupe, Ic: Iceland, Ir: Ireland, Ka: Kauai, Re: La Réunion, Ma: Martinique, Md: Madeira, Mj: Majorca, My: Mayotte, Nc: New Caledonia, Nz: North New Zealand, Oa: Oahu, Po: Possession, Sm: São Miguel, Sa: Sardinia and Sz: South New Zealand) and six continental areas (Ch: China, Fi: Finland, Fr: France, Gy: French Guiana, Ke: Kenya and Us: USA). 'env' includes environmental data associated with each sampling station, including geographical coordinates ('x' and 'y'), pH, conductivity ('cond' in uS/cm), total phosphorus ('tp' in mg/l), total nitrogen ('tn' in mg/l), orthophosphates ('po4' in mg/l), water temperature (wat_temp in °C), bioclimatic data from WorldClim database at 0.5 minutes resolution ('ann_prec': annual precipitation (mm), 'prec_sea': seasonality in precipitation (%), 'ann_temp': annual temperature (°C), and 'sea_temp': temperature seasonality), altitude ('alti' in meters) and slope. The data from Mayotte island reported in this dataset comes from Rimet, F., Tapolczai, K., Vasselon, V., Mary, N. Bouchez, A. (2019) Mayotte rivers: databases used for the development of diatom and macroinvertebrates water quality tools. https://doi.org/10.15454/6Z5IAH
DOI: 10.57745/zuexjp
title: Forêts plantées, les ordres de grandeur

description: définition et chiffres clefs sur les forêts plantées en france