cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2l7kgw
title: CCDC 2390548: Experimental Crystal Structure Determination

description: Related Article: Yazdanbakhsh Lotfi Nosood, Negin Fattahi Ghahnavieh, Ahmad Takallou, Ali Rostami, Amirhossein Ebrahimi, Muhammad U. Anwar, Ahmed Al-Harrasi|2025|Org.Biomol.Chem.|23|4084|doi:10.1039/D4OB01702A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5mp4w10q
title: MassIVE MSV000097759 - A novel immunocapture-based cell-type specific isolation of extracellular vesicles coupled with proteomic profiling reveals a stromal cell-derived subpopulation in synovial fluid from arthritis patients
title: Extracellular vesicles (EVs) are emerging as key mediators of disease progression and promising sources of biomarkers across various disease conditions, including joint disorders such as rheumatoid arthritis (RA) and osteoarthritis (OA). While molecular profiling of synovial tissue has uncovered disease driving cellular endotypes, EVs reflecting the physiology of their originator cells and accessible in biofluids offer a minimally invasive alternative for biomarker discovery. However, the complexity of biofluids like synovial fluid and the heterogeneity of EV populations have hindered the identification of disease-relevant EV subsets. To address these challenges, we developed a novel size-exclusion chromatography and ultrafiltration coupled immunocapturen based EV separation approach to selectively isolate cell type specific EV subpopulations from synovial fluid. As proof of concept, we targeted stromal erived EVs using CD90, a surface marker on synovial fibroblasts implicated in RA pathogenesis. Western blotting and mass spectrometry-based proteomics of CD90+ EVs from patient synovial fluid confirmed successful separation of stromal versus immune cell derived EVs. The refined EV isolation method coupled to comprehensive proteomic profiling revealed distinct cell type associated EV signatures, enabling classification of EV subpopulations and identification of candidate biomarkers. This fit for purpose strategy offers a powerful platform for dissecting EV heterogeneity in synovial fluid and advancing precision diagnostics in arthritis
DOI: 10.5517/ccdc.csd.cc2llt9b
title: CCDC 2401362: Experimental Crystal Structure Determination

description: Related Article: Su-Fan Gao, Xiao Fu, Qian-Mao Zhang, Ren-Zhi Tang, Wen-Juan Wan, Li-Xin Wang|2025|Org.Biomol.Chem.|23|4100|doi:10.1039/D5OB00231A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ls4wf
title: CCDC 2406495: Experimental Crystal Structure Determination

description: Related Article: Alexander V. Migulin, Constantine V. Milyutin, Boris V. Lichitsky, Stepan M. Korobkov, Andrey N. Komogortsev|2025|Org.Biomol.Chem.|23|4172|doi:10.1039/D5OB00264H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ls50l
title: CCDC 2406499: Experimental Crystal Structure Determination

description: Related Article: Alexander V. Migulin, Constantine V. Milyutin, Boris V. Lichitsky, Stepan M. Korobkov, Andrey N. Komogortsev|2025|Org.Biomol.Chem.|23|4172|doi:10.1039/D5OB00264H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p13qyxut
title: Pedestrian evacuation time maps for Puerto Rico tsunami-hazard zones

description: The communities of Puerto Rico are threatened by tsunamis from many earthquake sources (scenarios). Earthquake and tsunami modeling was conducted by experts to recognize as many earthquake sources as possible. Of the 34 tsunami scenarios developed, experts found that 16 could inundate some areas of Puerto Rico where people live and work with significant distance to safety. Pedestrian Evacuation Analyst Tool (PEAT) was run on to create 16 shapefiles of pedestrian evacuation travel time maps for 16 tsunami scenarios, modelled for slow walk (1.20 meters per second) evacuation travel speed. Thirteen shapefiles cover areas in the north shore and 3 cover the south shore and Punta Santiago.
DOI: 10.5517/ccdc.csd.cc2m7gx8
title: CCDC 2420260: Experimental Crystal Structure Determination

description: Related Article: Chidrawar Ajay, B. Sridhar, B. V. Subba Reddy|2025|Org.Biomol.Chem.|23|4206|doi:10.1039/D5OB00170F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kp11c
title: CCDC 2373702: Experimental Crystal Structure Determination

description: Related Article: P. Kuś, J. Kusz, M. Książek, M. Rojkiewicz|2025|Acta Crystallogr.,Sect.C:Cryst.Struct.Chem.|81|252|doi:10.1107/S2053229625002499
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.7tebnh
title: Occurrence Download

description: A dataset containing 3296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Hyla gratiosa LeConte, 1856)"
 ]
}

 The dataset includes 3296 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007958-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc68jc
title: Occurrence Download

description: A dataset containing 4445 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptoglossa Steetz ex F.Muell."
 ]
}

 The dataset includes 4445 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007959-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y68y7j
title: Occurrence Download

description: A dataset containing 6591 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Colias croceus (Geoffroy, 1785)"
 ]
}

 The dataset includes 6591 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007960-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/d3xv-ccuz
title: Measurement of Nitrogen oxides at Puy de Dôme

description: Measurement of Nitrogen oxides at Puy de Dôme
DOI: 10.48597/97f4-8amw
title: Measurement of Nitrogen oxides at Puy de Dôme

description: Measurement of Nitrogen oxides at Puy de Dôme
DOI: 10.48597/kxcg-2e8b
title: Nitrogen oxides at Puy de Dôme

description: Measurement of Nitrogen oxides at Puy de Dôme
DOI: 10.48597/y9ec-wkq7
title: Measurement of Nitrogen oxides at Puy de Dôme

description: Measurement of Nitrogen oxides at Puy de Dôme
DOI: 10.48597/ecsx-es5j
title: Measurement of Nitrogen oxides at Puy de Dôme

description: Measurement of Nitrogen oxides at Puy de Dôme
DOI: 10.15468/dl.6ympa3
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Entimus imperialis (Forster J.R, 1771)"
 ]
}

 The dataset includes 204 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007962-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15310585
title: Text embeddings from the MultiCaRe dataset

description: The MultiCaRe dataset contains multi-modal data from over 70,000 open access and de-identified case reports from PubMed Central. The full dataset includes metadata, clinical cases, image captions and more than 130,000 images, but this subset contains only the textual clinical cases and their embeddings.

The license of the dataset as a whole is CC BY-NC-SA. However, its individual contents may have less restrictive license types (CC BY, CC BY-NC, CC0). The license information and the citation data of each article can be found in the metadata.parquet file.
DOI: 10.5281/zenodo.15310586
title: Text embeddings from the MultiCaRe dataset

description: The MultiCaRe dataset contains multi-modal data from over 70,000 open access and de-identified case reports from PubMed Central. The full dataset includes metadata, clinical cases, image captions and more than 130,000 images, but this subset contains only the textual clinical cases and their embeddings.

The license of the dataset as a whole is CC BY-NC-SA. However, its individual contents may have less restrictive license types (CC BY, CC BY-NC, CC0). The license information and the citation data of each article can be found in the metadata.parquet file.
DOI: 10.15468/dl.ny3rfy
title: Occurrence Download

description: A dataset containing 12425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Telekia Baumg."
 ]
}

 The dataset includes 12425 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007961-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbbp8a
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is India",
 "GadmGid is IND.16_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Apus apus (Linnaeus, 1758)",
 "Year 2017-2017"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000545-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15512473
title: Text generated by OPUS-MT and T5 models with single-bit errors in the parameters

description: Description

The dataset contains text generated using T5 and OPUS-MT model with and with single-bit errors in the parameters of the LLM. The T5 LLM used the CNN Daily Mail dataset for summarization and OPUS-MT used the IWSLT2017 dataset for Chinese-to-English translation.

 

Folders:



t5_fp32: T5 model with a quantified version of FP32

t5_fp16: T5 model with a quantified version of FP16

opus_fp32: OPUS-MT model with a quantified version of FP32

opus_fp16: OPUS-MT model with a quantified version of FP16


Files:



{cnn/iwslt2017}_input_text.txt: Input text, that is, text to summarize (cnn and T5) or Chinese text to translate (iwslt2017 and OPUS-MT).  For each dataset in total there are number_input_texts.

{cnn/iwslt2017}_output_reference.txt: Example of result expected for CNN (T5) and IWSLT2017 (OPUS-MT). For each dataset in total there are number_input_texts.

{cnn/iwslt2017}_output_predict_fault_free: Example of predictions without single-bit errors. For each dataset in total there are number_input_texts.

{cnn/iwslt2017}_output_predict_single_fi_bit_100times: Example of predictions with 100 different single-bit error. In each dataset in total there are 100*number input texts.


Paper



Paper: Concurrent Linguistic Error Detection (CLED) for Large Language Models

Cite:


@misc{zhu2024concurrent,      title={Concurrent Linguistic Error Detection (CLED) for Large Language Models},       author={Jinhua Zhu and Javier Conde and Zhen Gao and Pedro Reviriego and Shanshan Liu and Fabrizio Lombardi},      year={2024},      eprint={2403.16393},      archivePrefix={arXiv},      primaryClass={cs.AI}}
DOI: 10.15468/dl.dd8qdy
title: Occurrence Download

description: A dataset containing 123712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pultenaea Sm."
 ]
}

 The dataset includes 123712 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000548-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13937134
title: Implementing Riverine Biogeochemical Inputs in ECCO-Darwin: a Critical Step Forward for a Pioneering Data-Assimilative Global-Ocean Biogeochemistry Model

description: Resolving riverine biogeochemical inputs in ocean biogeochemistry models is pivotal for capturing the spatiotemporal variability of nutrients and carbon in coastal regions and in the global ocean. ECCO-Darwin is a pioneering data-assimilative global-ocean biogeochemistry model, which, to date, has focused on the pelagic zone. As a key step towards improving the representation of coastal regions in ECCO-Darwin, we add lateral inputs of carbon, nitrogen, and silica and evaluate the model response with regard to primary production and ocean carbon cycling. We generate riverine inputs by combining point-source freshwater discharge from JRA55-do with the Global NEWS 2 watershed model, accounting for lateral inputs from 5171 watersheds worldwide. While adding carbon and nutrients along with freshwater improves biogeochemical skill in river plume regions and coastal waters, the open-ocean response may be overestimated due to an excess of carbon and nutrients advected offshore. This highlights the need for a more nuanced representation of land-to-ocean and nearshore processes for quantifying how global-ocean primary production and carbon cycling respond to land-to-ocean inputs.
description: ECCO-Darwin LLC90 monthly model outputs from Savelli et al.

Period: Jan 1992- Dec 2019

Variables:



pCO2: surface-ocean partial pressure in carbon dioxide (atm)

CO2flux: air-sea carbon dioxide fluxes (mmolC/m2/s)

PP: depth-integrated net primary production (mmolC/m2/s)

SIarea: percentage of sea-ice cover (%)


Experiments code:



psfresh: Baseline

all: ALL_run

dicdoc: DC_run

dic: DIC_run

dindon: DN_run

din: DIN_run

dsi: DSi_run

radi: ALL_run+RADI






amazon: Amazon-only ALL_run

amur: Amur-only ALL_run

congo: Congo-only ALL_run

ganges: Ganges-only ALL_run

indus: Indus-only ALL_run

lena: Lena-only ALL_run

mackenzie: Mackenzie-only ALL_run

missi: Mississippi-only ALL_run

niger: Niger-only ALL_run

nile: Nile-only ALL_run

ob: Ob-only ALL_run

parana: Paraná-only ALL_run

yangtze: Yangtze-only ALL_run

yenisei: Yenisey-only ALL_run

zambezi: Zambezi-only ALL_run



Grid files are available in ECCO_V4r5.zip
DOI: 10.5281/zenodo.15512392
title: Implementing Riverine Biogeochemical Inputs in ECCO-Darwin: a Critical Step Forward for a Pioneering Data-Assimilative Global-Ocean Biogeochemistry Model

description: Resolving riverine biogeochemical inputs in ocean biogeochemistry models is pivotal for capturing the spatiotemporal variability of nutrients and carbon in coastal regions and in the global ocean. ECCO-Darwin is a pioneering data-assimilative global-ocean biogeochemistry model, which, to date, has focused on the pelagic zone. As a key step towards improving the representation of coastal regions in ECCO-Darwin, we add lateral inputs of carbon, nitrogen, and silica and evaluate the model response with regard to primary production and ocean carbon cycling. We generate riverine inputs by combining point-source freshwater discharge from JRA55-do with the Global NEWS 2 watershed model, accounting for lateral inputs from 5171 watersheds worldwide. While adding carbon and nutrients along with freshwater improves biogeochemical skill in river plume regions and coastal waters, the open-ocean response may be overestimated due to an excess of carbon and nutrients advected offshore. This highlights the need for a more nuanced representation of land-to-ocean and nearshore processes for quantifying how global-ocean primary production and carbon cycling respond to land-to-ocean inputs.
description: ECCO-Darwin LLC90 monthly model outputs from Savelli et al.

Period: Jan 1992- Dec 2019

Variables:



pCO2: surface-ocean partial pressure in carbon dioxide (atm)

CO2flux: air-sea carbon dioxide fluxes (mmolC/m2/s)

PP: depth-integrated net primary production (mmolC/m2/s)

SIarea: percentage of sea-ice cover (%)


Experiments code:



psfresh: Baseline

all: ALL_run

dicdoc: DC_run

dic: DIC_run

dindon: DN_run

din: DIN_run

dsi: DSi_run

radi: ALL_run+RADI






amazon: Amazon-only ALL_run

amur: Amur-only ALL_run

congo: Congo-only ALL_run

ganges: Ganges-only ALL_run

indus: Indus-only ALL_run

lena: Lena-only ALL_run

mackenzie: Mackenzie-only ALL_run

missi: Mississippi-only ALL_run

niger: Niger-only ALL_run

nile: Nile-only ALL_run

ob: Ob-only ALL_run

parana: Paraná-only ALL_run

yangtze: Yangtze-only ALL_run

yenisei: Yenisey-only ALL_run

zambezi: Zambezi-only ALL_run



Grid files are available in ECCO_V4r5.zip

The latest version of the code is available in the GitHub clone Code_Savellietal.zip. Please, follow the instructions from https://github.com/MITgcm-contrib/ecco_darwin/blob/master/v05/1deg_runoff/readme_darwin_v4r5.txt.
DOI: 10.6084/m9.figshare.29145857
title: Data-Didactic analysis of natural science textbooks in Ecuador

description: This dataset supports a study analyzing twelve Ecuadorian eighth-grade natural science textbooks to evaluate their alignment with constructivist learning principles and the competencies outlined in the Prioritized Curriculum. Using content analysis with tools like ATLAS.ti 25 and IRaMuTeQ, the research found limited use of constructivist strategies such as inquiry-based learning and problem-solving. The findings suggest a need to improve the didactic structure of textbooks to promote meaningful, contextualized learning in line with curricular goals.<br><br>
DOI: 10.15468/dl.39t2xj
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "GadmGid is ZAF.4_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vachellia xanthophloea (Benth.) Banfi & Galasso",
 "Year 2020-2025"
 ]
}

 The dataset includes 223 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000554-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvycuf
title: Occurrence Download

description: A dataset containing 327328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nesosydne sappho Fennah, 1955, Gliomastix luzulae (Fuckel) E.W.Mason ex S.Hughes, Septofusidium herbarum (A.H.S.Br. & G.Sm.) Samson, Amauris niavius (Linnaeus, 1758), Euploea sylvester swinhoei Wallace & Moore, 1866, Agrilus paramasculinus Champlain & Knull, 1923, Myelobia atrosparsellus Walker, 1863, Tanaostigmodes haematoxyli (Dozier, 1932), Macrocorupha gynerii Muir, 1926, Columbisoga gyneriicola Muir, 1926, Hadena irregularis Hufnagel, 1766, Merophyas divulsana (Walker, 1863), Chlorissa etruscaria (Zeller, 1849), Elasmus bistrigatus Graham, 1995, Tuttiola spini (Denis & Schiffermüller), 1776, Alternaria juxtiseptata E.G.Simmons, Tila capsophilella (Chrétien, 1900), Cyclopoliarus jamaicensis Fennah, 1945, Eurytoma argentifrons Askew, 2003, Auloicerya australis (Maskell, 1894), Liothula omnivora Fereday, 1878, Stegommata leptomitella (Meyrick, 1880), Acizzia hakeae (Tuthill, 1952), Stylogeocoris biroi Montandon, 1913, Eupolemus marginatus (Reuter, 1881), Bombycopsis indecora (Walker, 1865), Ancylosis gracilella Ragonot, 1887, Coleophora klimeschiella Toll, 1952, Sphoeroides spengleri (Bloch, 1785), Chelonia mydas (Linnaeus, 1758), Cantherhines pullus (Ranzani, 1842), Siganus luridus (Rüppell, 1829), Tripneustes gratilla (Linnaeus, 1758), Iratsume orsedice (Butler, 1881), Olethreutes merrickanum (Kearfott, 1907), Olethreutes footiana (Fernald, 1882), Drasteria grandirena Haworth, 1809, Hormaphis hamamelidis (Fitch, 1851), Kyboasca atrolabes (Gillette, 1898), Typhlocyba shawneeana Knull, 1945, Dikrella hamar (DeLong & Ross, 1950), Datana major Grote & Robinson, 1866, Datana drexelii H.Edwards, 1884, Hamamelistes spinosus Shimer, 1867, Pyreferra hesperidago Guenée, 1852, Chrysocharis occidentalis (Girault, 1916), Dactyloceras lucina Drury, 1782, Neostichtis nigricostata Hampson, 1908, Temnora livida Holland, 1889, Candalides consimilis Waterhouse, 1942)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 327328 records from 1229 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000551-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f66y3f
title: Occurrence Download

description: A dataset containing 2229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "OccurrenceStatus is Present",
 "TaxonKey is Bassariscus astutus (Lichtenstein, 1830)"
 ]
}

 The dataset includes 2229 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000553-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ba63q9
title: Occurrence Download

description: A dataset containing 652945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is greater than or equal to 2000",
 "Month is June",
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((127.5 26.0, 127.5 27.0, 128.5 27.0, 128.5 26.0, 127.5 26.0))"
 ]
}

 The dataset includes 652945 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000549-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11948577
title: Peer-to-Peer Boliviano (BOB) Exchange Data