cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/114517
title: Fluorometer data collected during research cruise AT26-17 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114450
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-17 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114624
title: Meteorological Station data collected during research cruise AT26-17 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114625
title: Meteorological Station data collected during research cruise AT26-17 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114455
title: Multibeam Echosounder data collected during research cruise AT26-17 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705940
title: Additional file 1: of Swift metabolite changes and leaf shedding are milestones in the acclimation process of grapevine under prolonged water stress

description: Table S1. Stomatal conductance measurements of 2014 and 2015 presented as mean (N = 4) and standard error. The respective time points are indicated with days from treatment application. Table S2. Fold change (Treatment/Control) of leaf secondary metabolites during the time course of the experiment in 2014 and 2015. Table S3. Fold change (Treatment/Control) of leaf central metabolites during the time course of the experiment in 2014 and 2015. Table S4. Summary of RNA sequencing analysis metrics. The table show the number of filtered reads and aligned reads (filtered) to the 12X grapevine reference genome that are counted. Table S5. Transcript abundance of the all 29,970 genes, reported as Reads Per Kilobase of transcript, per Million mapped reads (RPKM), in leaves of well-watered and water deficit treated grapevines at day 4, 8 (2014) and day 12 (2015). Tables S6–S8. Summary of differentially expressed genes (FDR 1) in grapevine leaves comparing well-watered and water deficit treatments. DESeq2 statistical outputs of day 4, 8 (2014) and day 12 (2015) treatments are listed in Table S6, S7, and S8, respectively.. Annotation of genes were referred from Vitisnet ( https://www.sdstate.edu/agronomy-horticulture-and-plant-science/functional-genomics-bud-endodormancy-induction-grapevines-5 ) (Grimplet et al. 2009). Table S9. List of differentially expressed genes in grapevine leaves that are common and unique leaves in each intersection of the Venn diagram described in Fig. 4b. Table S10. Summary of enriched (FDR
DOI: 10.6084/m9.figshare.7705940.v1
title: Additional file 1: of Swift metabolite changes and leaf shedding are milestones in the acclimation process of grapevine under prolonged water stress

description: Table S1. Stomatal conductance measurements of 2014 and 2015 presented as mean (N = 4) and standard error. The respective time points are indicated with days from treatment application. Table S2. Fold change (Treatment/Control) of leaf secondary metabolites during the time course of the experiment in 2014 and 2015. Table S3. Fold change (Treatment/Control) of leaf central metabolites during the time course of the experiment in 2014 and 2015. Table S4. Summary of RNA sequencing analysis metrics. The table show the number of filtered reads and aligned reads (filtered) to the 12X grapevine reference genome that are counted. Table S5. Transcript abundance of the all 29,970 genes, reported as Reads Per Kilobase of transcript, per Million mapped reads (RPKM), in leaves of well-watered and water deficit treated grapevines at day 4, 8 (2014) and day 12 (2015). Tables S6–S8. Summary of differentially expressed genes (FDR 1) in grapevine leaves comparing well-watered and water deficit treatments. DESeq2 statistical outputs of day 4, 8 (2014) and day 12 (2015) treatments are listed in Table S6, S7, and S8, respectively.. Annotation of genes were referred from Vitisnet ( https://www.sdstate.edu/agronomy-horticulture-and-plant-science/functional-genomics-bud-endodormancy-induction-grapevines-5 ) (Grimplet et al. 2009). Table S9. List of differentially expressed genes in grapevine leaves that are common and unique leaves in each intersection of the Venn diagram described in Fig. 4b. Table S10. Summary of enriched (FDR
DOI: 10.7284/114553
title: Radiometer data collected during research cruise AT26-17 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705925
title: Additional file 7: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S6. Feature and pathogenicity scores for intron variant 11:134086816.T &gt; C associated with gene NCAPD3. (XLSX 12 kb)
DOI: 10.7284/114571
title: Radiometer data collected during research cruise AT26-17 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705925.v1
title: Additional file 7: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S6. Feature and pathogenicity scores for intron variant 11:134086816.T &gt; C associated with gene NCAPD3. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7705916
title: Additional file 6: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S5. Prioritization of 37 non-coding pathogenic variants and their associated 37 internal control negative common variants spiked in within 100 individual genomes. (XLSX 17 kb)
DOI: 10.7284/114589
title: Water Temperature data collected during research cruise AT26-17 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705910
title: Additional file 4: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S3. Random common variants matched by region to the pathogenic variants from Table S2. (XLSX 291 kb)
DOI: 10.6084/m9.figshare.7705913
title: Additional file 5: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S4. Validation set including a “positive” set of 70 SNVs in non-coding regions of protein-coding genes newly reported in recent updates of the HGMD and ClinVar databases, and a “negative” set of 700 randomly sampled common human variants, matched per type of region to the “positive” set. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7705916.v1
title: Additional file 6: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S5. Prioritization of 37 non-coding pathogenic variants and their associated 37 internal control negative common variants spiked in within 100 individual genomes. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7705913.v1
title: Additional file 5: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S4. Validation set including a “positive” set of 70 SNVs in non-coding regions of protein-coding genes newly reported in recent updates of the HGMD and ClinVar databases, and a “negative” set of 700 randomly sampled common human variants, matched per type of region to the “positive” set. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7705910.v1
title: Additional file 4: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S3. Random common variants matched by region to the pathogenic variants from Table S2. (XLSX 291 kb)
DOI: 10.7284/114535
title: TSG (Thermosalinograph) data collected during research cruise AT26-17 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705898
title: Additional file 3: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S2. Regional bias of pathogenic score distributions. (XLSX 11 kb)
DOI: 10.7284/115023
title: Multiplexed data collected during research cruise AT26-18 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705883
title: Additional file 1: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S1. Subset of the 737 curated disease-causing non-coding variants. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.7705898.v1
title: Additional file 3: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S2. Regional bias of pathogenic score distributions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7705883.v1
title: Additional file 1: of NCBoost classifies pathogenic non-coding variants in Mendelian diseases through supervised learning on purifying selection signals in humans

description: Table S1. Subset of the 737 curated disease-causing non-coding variants. (XLSX 53 kb)
DOI: 10.7284/115024
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT26-18 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115025
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AT26-18 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115022
title: Fluorometer data collected during research cruise AT26-18 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115021
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-18 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115027
title: Meteorological Station data collected during research cruise AT26-18 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115028
title: Meteorological Station data collected during research cruise AT26-18 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115026
title: Multibeam Echosounder data collected during research cruise AT26-18 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115030
title: Radiometer data collected during research cruise AT26-18 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115031
title: Radiometer data collected during research cruise AT26-18 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705778
title: Additional file 2: of Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes

description: Amino acid substitutions in chromosomal AMR genes, as identified using ARIBA software. Genes involved in quinolones AMR (gyrA, gyrB, parC and parE) are highlighted in grey. Amino acid substitutions in quinolone resistance-determining region (QRDR) of the above-cited genes are in bold. (XLS 41.5 kb)
DOI: 10.6084/m9.figshare.7705778.v1
title: Additional file 2: of Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes

description: Amino acid substitutions in chromosomal AMR genes, as identified using ARIBA software. Genes involved in quinolones AMR (gyrA, gyrB, parC and parE) are highlighted in grey. Amino acid substitutions in quinolone resistance-determining region (QRDR) of the above-cited genes are in bold. (XLS 41.5 kb)
DOI: 10.6084/m9.figshare.7705772
title: Additional file 1: of Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes

description: Quality metrics of genome assemblies (QUAST 4.5). (XLS 36 kb)
DOI: 10.7284/115032
title: Water Temperature data collected during research cruise AT26-18 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705772.v1
title: Additional file 1: of Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes

description: Quality metrics of genome assemblies (QUAST 4.5). (XLS 36 kb)
DOI: 10.6084/m9.figshare.7705757
title: Additional file 1: of Pooled PCR testing of dried blood spots for infant HIV diagnosis is cost efficient and accurate

description: NHLS Tygerberg data. This file contains the daily number of infant blood samples received at this lab and the number testing HIV positive between January 2009 and July 2015. (CSV 50 kb)
DOI: 10.7284/115029
title: TSG (Thermosalinograph) data collected during research cruise AT26-18 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705757.v1
title: Additional file 1: of Pooled PCR testing of dried blood spots for infant HIV diagnosis is cost efficient and accurate

description: NHLS Tygerberg data. This file contains the daily number of infant blood samples received at this lab and the number testing HIV positive between January 2009 and July 2015. (CSV 50 kb)
DOI: 10.7284/115035
title: Multiplexed data collected during research cruise AT26-19 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705739
title: Additional file 2: of Psychometric evaluation of the Russian version of the flourishing scale in a sample of older adults living in Siberia

description: Dataset with the variables analysed in this manuscript. (CSV 60 kb)
DOI: 10.6084/m9.figshare.7705733
title: Additional file 1: of Psychometric evaluation of the Russian version of the flourishing scale in a sample of older adults living in Siberia

description: Template of the R script. (R 4 kb)
DOI: 10.6084/m9.figshare.7705733.v1
title: Additional file 1: of Psychometric evaluation of the Russian version of the flourishing scale in a sample of older adults living in Siberia

description: Template of the R script. (R 4 kb)
DOI: 10.6084/m9.figshare.7705739.v1
title: Additional file 2: of Psychometric evaluation of the Russian version of the flourishing scale in a sample of older adults living in Siberia

description: Dataset with the variables analysed in this manuscript. (CSV 60 kb)
DOI: 10.7284/115037
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT26-19 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705727
title: Additional file 2: of Contrasting patterns of molecular evolution in metazoan germ line genes

description: Alignments. (ZIP 213 kb)
DOI: 10.7284/115036
title: Expendable Probe data collected during research cruise AT26-19 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705727.v1
title: Additional file 2: of Contrasting patterns of molecular evolution in metazoan germ line genes

description: Alignments. (ZIP 213 kb)
DOI: 10.7284/115034
title: Fluorometer data collected during research cruise AT26-19 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115033
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-19 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115039
title: Meteorological Station data collected during research cruise AT26-19 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115040
title: Meteorological Station data collected during research cruise AT26-19 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705664
title: Additional file 2: of Axl kinase drives immune checkpoint and chemokine signalling pathways in lung adenocarcinomas

description: Table S1. 935 genes positively correlating AXL mRNA expression in a NSCLC biobank (GSE accession number, GSE42127). Table S2. 137 genes negatively correlating AXL mRNA expression in a NSCLC biobank (GSE accession number, GSE42127). Table S3. Ontology terms enriched in the 935 genes that positively correlated AXL mRNA expression in a lung cancer biobank (GSE accession number, GSE42127). Table S4. Characteristics of patients (nâ =â 76) with lung adenocarcinomas of our Tohoku University Biobank for the qPCR validation study. Table S5. Primer list. Table S6. Correlation of mRNA expression between AXL and genes encoding co-stimulatory/inhibitory molecules as shown by Pearsonâ s r. (XLSX 68 kb)
DOI: 10.7284/115038
title: Multibeam Echosounder data collected during research cruise AT26-19 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705664.v1
title: Additional file 2: of Axl kinase drives immune checkpoint and chemokine signalling pathways in lung adenocarcinomas

description: Table S1. 935 genes positively correlating AXL mRNA expression in a NSCLC biobank (GSE accession number, GSE42127). Table S2. 137 genes negatively correlating AXL mRNA expression in a NSCLC biobank (GSE accession number, GSE42127). Table S3. Ontology terms enriched in the 935 genes that positively correlated AXL mRNA expression in a lung cancer biobank (GSE accession number, GSE42127). Table S4. Characteristics of patients (nâ =â 76) with lung adenocarcinomas of our Tohoku University Biobank for the qPCR validation study. Table S5. Primer list. Table S6. Correlation of mRNA expression between AXL and genes encoding co-stimulatory/inhibitory molecules as shown by Pearsonâ s r. (XLSX 68 kb)
DOI: 10.7284/115042
title: Radiometer data collected during research cruise AT26-19 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115043
title: Radiometer data collected during research cruise AT26-19 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118602
title: Singlebeam Echosounder data collected during research cruise AT26-19 using a Knudsen 320B/R instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115044
title: Water Temperature data collected during research cruise AT26-19 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705604
title: MOESM2 of Are circulating microRNAs suitable for the early detection of malignant mesothelioma? Results from a nested caseâ control study

description: Additional file 2. Detailed characteristics of the study subjects and quantitative miRNA expression data.
DOI: 10.7284/115041
title: TSG (Thermosalinograph) data collected during research cruise AT26-19 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705604.v1
title: MOESM2 of Are circulating microRNAs suitable for the early detection of malignant mesothelioma? Results from a nested caseâ control study

description: Additional file 2. Detailed characteristics of the study subjects and quantitative miRNA expression data.
DOI: 10.6084/m9.figshare.7705595
title: MOESM1 of Are circulating microRNAs suitable for the early detection of malignant mesothelioma? Results from a nested caseâ control study

description: Additional file 1. Characteristics of prediagnostic mesothelioma cases and asbestos-exposed controls in the nested caseâ control study.
DOI: 10.7284/115047
title: Multiplexed data collected during research cruise AT26-20 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7705589
title: Additional file 2 of CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing

description: Analysis notebook. Compiled Jupyter notebook to run analysis of experiments. (HTML 17,183 kb)
DOI: 10.6084/m9.figshare.7705592
title: Additional file 3 of CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing

description: Experiment scripts. Archived script files to reproduce the experiments. (TAR 81 kb)
DOI: 10.6084/m9.figshare.7705592.v1
title: Additional file 3 of CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing

description: Experiment scripts. Archived script files to reproduce the experiments. (TAR 81 kb)
DOI: 10.6084/m9.figshare.7705595.v1
title: MOESM1 of Are circulating microRNAs suitable for the early detection of malignant mesothelioma? Results from a nested caseâ control study

description: Additional file 1. Characteristics of prediagnostic mesothelioma cases and asbestos-exposed controls in the nested caseâ control study.
DOI: 10.6084/m9.figshare.7705589.v1
title: Additional file 2 of CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing

description: Analysis notebook. Compiled Jupyter notebook to run analysis of experiments. (HTML 17,183 kb)