cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.vv89b2
title: Occurrence Download

description: A dataset containing 735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Iris ensata Thunb."
 ]
}

 The dataset includes 735 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034192-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3640079_d2
title: Additional file 3: of Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing

description: Copy number calls for all single cells and bulk samples. (ZIP 631 kb)
DOI: 10.6084/m9.figshare.c.3640079_d3
title: Additional file 2: of Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing

description: Supplementary Tables S1â  S7. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3640085_d2
title: Additional file 2 of Diffany: an ontology-driven framework to infer, visualise and analyse differential molecular networks

description: List of differentially expressed genes. Dataset of differentially expressed genes, as originally published by [24]. Here, those genes are listed that are differentially expressed in at least one of the 4 time points and in either the more (FDR &lt; 0.05) or less (FDR &lt; 0.1) stringent dataset. This file also depicts the overlap of genes at the different time points. (XLSX 514 KB)
DOI: 10.6084/m9.figshare.27936084.v2
title: GSE185381 29_Nov_2024 CITE_adult_AML

description: GSE185381 bone marrow 29/Nov 2024
DOI: 10.6084/m9.figshare.c.3640460_d1
title: Additional file 1: of Enhancement of the BG-sentinel trap with varying number of mice for field sampling of male and female Aedes albopictus mosquitoes

description: Total data set of female and male Aedes albopictus recapture according to the replicate, the site, the location and the bait of the trap. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3640463_d2
title: MOESM2 of Malaria intervention scale-up in Africa: effectiveness predictions for health programme planning tools, based on dynamic transmission modelling

description: Additional file 2. Coefficients and p values of OpenMalaria-based statistical impact functions.
DOI: 10.6084/m9.figshare.c.3640463_d3
title: MOESM4 of Malaria intervention scale-up in Africa: effectiveness predictions for health programme planning tools, based on dynamic transmission modelling

description: Additional file 4. Predicted relative burden reductions from alternative statistical models, as part of the sensitivity analysis.
DOI: 10.6084/m9.figshare.c.3640472_d1
title: Additional file 1: of Pregnant womensâ   concerns when invited to a randomized trial: a qualitative case control study

description: Topic list to guide the interview. (ZIP 13 kb)
DOI: 10.6084/m9.figshare.c.3640895_d2
title: Additional file 3 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S3. Error Transition Probabilities for all platforms. (ZIP 34 kb)
DOI: 10.6084/m9.figshare.c.3640895_d8
title: Additional file 10 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S10. Heatmap of arc heal species in the EM community. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.c.3640895_d9
title: Additional file 4 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S4. Impact of platform and region on entropy. (ZIP 16 kb)
DOI: 10.6084/m9.figshare.c.3640895_d11
title: Additional file 9 of A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling

description: Figure S9. Impact of PCR cycles on OTUs. (ZIP 43 kb)
DOI: 10.6084/m9.figshare.c.3640901_d1
title: Additional file 5: Table S5. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Dynamic flexion. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3640901_d3
title: Additional file 6: Table S6. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: EMG. (XLS 134 kb)
DOI: 10.6084/m9.figshare.c.3640901_d2
title: Additional file 4: Table S4. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Strength. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3640901_d4
title: Additional file 1: Table S1. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Oxford Shoulder Score. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3640901_d5
title: Additional file 2: Table S2. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: EQ-5D-5L. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3640901_d6
title: Additional file 3: Table S3. of Enhanced function and quality of life following 5Â months of exercise therapy for patients with irreparable rotator cuff tears â   an intervention study

description: Range of motion. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3640910_d1
title: Additional file 1: of Influence of silicone oil tamponade on self-sealing sclerotomy using 25-gauge transconjunctival sutureless vitrectomy: a retrospective comparative study

description: Each factor and postoperative IOPs in each period of each case. (XLS 30Â kb)
DOI: 10.6084/m9.figshare.c.3641363_d1
title: Additional file 2: of Do holes in long-lasting insecticidal nets compromise their efficacy against pyrethroid resistant Anopheles gambiae and Culex quinquefasciatus? Results from a release–recapture study in experimental huts

description: Data from experiments.
DOI: 10.6084/m9.figshare.c.3641363_d4
title: Additional file 4: of Do holes in long-lasting insecticidal nets compromise their efficacy against pyrethroid resistant Anopheles gambiae and Culex quinquefasciatus? Results from a release–recapture study in experimental huts

description: Risk ratios of mosquitoes being fed or dead depending on location.
DOI: 10.6084/m9.figshare.c.3641369_d1
title: MOESM3 of The 60S ribosomal protein L13 is the most preferable reference gene to investigate gene expression in selected organs from turkeys and chickens, in context of different infection models

description: Additional file 3. Raw CT values obtained in the present work. The raw CT values of all RT-qPCR experiments were used for calculations with different algorithms to assess the stability of each reference gene candidate.
DOI: 10.6084/m9.figshare.c.3641369_d3
title: MOESM2 of The 60S ribosomal protein L13 is the most preferable reference gene to investigate gene expression in selected organs from turkeys and chickens, in context of different infection models

description: Additional file 2. RNA integrity number measured with Bioanalyzer2100. The RIN values of all the samples used in the experiment are given.
DOI: 10.6084/m9.figshare.c.3641378_d1
title: Additional file 1: of Attentional and affective consequences of technology supported mindfulness training: a randomised, active control, efficacy trial

description: Complete Study Data. Complete study data from the baseline and follow-up assessments and the daily experience sampling data. (CSV 32 kb)
DOI: 10.6084/m9.figshare.c.3641867_d3
title: Additional file 4: Table S3. of Heme pathway evolution in kinetoplastid protists

description: Table with accession numbers of the proteins involved in the heme pathway, encoded in Kinetoplastea and the host Paramoeba/Neoparamoeba. (XLSX 72 kb))
DOI: 10.6084/m9.figshare.c.3641867_d5
title: Additional file 2: Table S2. of Heme pathway evolution in kinetoplastid protists

description: Table with accession numbers of proteins used for the Kinetoplastea phylogeny. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3641870_d1
title: MOESM6 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 6: Table S6. Chromosomal rearrangements of cancer function-related genes detected in the proband through single nucleotide polymorphism.
DOI: 10.6084/m9.figshare.c.3641870_d2
title: MOESM2 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 2: Table S2. List of genes associated with inherited predisposition to colorectal cancer (CRC).
DOI: 10.6084/m9.figshare.c.3641870_d3
title: MOESM4 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 4: Table S4. List of disorder of sex development (DSD) genes used to filter exome sequencing variants.
DOI: 10.6084/m9.figshare.c.3641870_d4
title: MOESM7 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 7: Table S7. List of variants identified in whole-genome sequencing (WES) data of the proband (blood sample and normal colon tissue) through the candidate gene approach.
DOI: 10.6084/m9.figshare.c.3641870_d5
title: MOESM8 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 8: Table S8. List of truncating mutations identified in the proband and his relatives.
DOI: 10.6084/m9.figshare.c.3641870_d6
title: MOESM1 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 1: Table S1. Variants of tumor genes detected by Sanger sequencing in the proband.
DOI: 10.6084/m9.figshare.c.3641870_d7
title: MOESM5 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 5: Table S5. List of single nucleotide variants (SNVs) and small insertions and deletions (INDELs) detected in WES data of III.2 and III.3 subjects.
DOI: 10.6084/m9.figshare.c.3641870_d8
title: MOESM3 of Whole exome sequencing and single nucleotide polymorphism array analyses to identify germline alterations in genes associated with testosterone metabolism in a patient with androgen insensitivity syndrome and early-onset colorectal cancer

description: Additional file 3: Table S3. List of genes significantly mutated in 233 colorectal tumors (TCGA project).
DOI: 10.6084/m9.figshare.c.3641879_d2
title: Additional file 14: Table S5. of Phenotypic convergence in bacterial adaptive evolution to ethanol stress

description: (CSV 3Â kb)List of primers used in this study.
DOI: 10.6084/m9.figshare.c.3641879_d5
title: Additional file 1: Table S1. of Phenotypic convergence in bacterial adaptive evolution to ethanol stress

description: (CSV 876Â kb)Time series expression analysis. The expression levels of 6 independent culture series (0, 384, 744, 1224, 1824, and 2496 hours after starting the culture) are presented.
DOI: 10.6084/m9.figshare.c.3641879_d7
title: Additional file 13: Table S4. of Phenotypic convergence in bacterial adaptive evolution to ethanol stress

description: (CSV 3Â kb)Â Point mutations and indels found in the parent strains in comparison with W3110 reference genome.
DOI: 10.6084/m9.figshare.c.3642113_d7
title: Additional file 14: of Direct imaging of glycans in Arabidopsis roots via click labeling of metabolically incorporated azido-monosaccharides

description: Figures in high resolution. (ZIP 22425Â kb)
DOI: 10.15468/dl.ww327z
title: Occurrence Download

description: A dataset containing 6596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (January, February)",
 "OccurrenceStatus is Present",
 "TaxonKey is Numenius arquata (Linnaeus, 1758)",
 "Year 2011-2011"
 ]
}

 The dataset includes 6596 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034194-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642119_d1
title: Additional file 2: of Herpes labialis and Nigerian dental health care providers: knowledge, attitudes, behaviors, and refusal to treat

description: Database for the study.Â (XLSX 19Â kb)
DOI: 10.6084/m9.figshare.c.3642128_d1
title: MOESM2 of Experimental bluetongue virus superinfection in calves previously immunized with bluetongue virus serotype 8

description: Additional file 2. Cumulative clinical scores. Cumulative clinical scores after the first BTV8 challenge in NV and V animals, BTV1/BTV15 superinfection and BTV1 and BTV15 single infections. Sd: Standard deviation.
DOI: 10.6084/m9.figshare.c.3642320_d4
title: Additional file 4: Table S4. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: Output generated from Mercator sequence annotation webserver ( http://www.plabipd.de/portal/web/guest/mercator-sequence-annotation ). The file can be used as input into MapMan as a mappings file to explore subsets of Glycine max version 2 gene models for significant enrichment in any of the Mercator defined bins. (XLSX 9217Â kb)
DOI: 10.6084/m9.figshare.c.3642320_d6
title: Additional file 3: Table S3. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: Expression levels of soybean predicted genes. Gene expression values are reported for all soybean predicted genes in control and inoculated Forrest genotype with non-pathogenic (FO36) and pathogenic (FO40) isolates of F. oxysporum at 72 and 96Â h post inoculation (hpi). Genes modulated at the different conditions in response to each isolate and time-point are provided in separate sheets for easier access. (XLSX 15482Â kb)
DOI: 10.6084/m9.figshare.c.3642320_d5
title: Additional file 6: Table S6. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: Expression levels and annotation results of soybean highly differentially expressed genes (HDEGs) modulated by inoculation with non-pathogenic (FO36) and pathogenic (FO40) isolates of F. oxysporum at 72 and 96Â h post inoculation (hpi). HDEGs were identified using QuasiSeq package using a Qvalue &lt;0.05. The fold changes and functional annotations are reported for each gene. HDEGs modulated at the different conditions in response to each isolate and time-point are provided in separate sheets for easier access. (XLSX 3049Â kb)
DOI: 10.6084/m9.figshare.c.3642320_d7
title: Additional file 5: Table S5. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: GO and Mercator bin enrichment results for FO36 and FO40 at both times post inoculation (72 and 96 hpi). (XLSX 334Â kb)
DOI: 10.6084/m9.figshare.c.3642320_d9
title: Additional file 9: Table S9. of Transcriptome profiling of soybean (Glycine max) roots challenged with pathogenic and non-pathogenic isolates of Fusarium oxysporum

description: Details of the real-time RT-PCR analysis. The file contains: the sequence ID of each gene analysed by real-time RT-PCR and the corresponding primer pairs used for the amplification (FOR = forward primer, REV = reverse primer). (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3642326_d2
title: Additional file 1: of Comparison of an automatic analysis and a manual analysis of conjunctival microcirculation in a sheep model of haemorrhagic shock

description: Raw data of blood withdrawal, haemodynamics, blood gas analysis and microcirculatory analysis. (XLSX 10 kb)
DOI: 10.15468/dl.bhchf9
title: Occurrence Download

description: A dataset containing 52615 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Numenius arquata (Linnaeus, 1758)",
 "Year 2010-2010"
 ]
}

 The dataset includes 52615 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034193-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3642326_d1
title: Additional file 2: of Comparison of an automatic analysis and a manual analysis of conjunctival microcirculation in a sheep model of haemorrhagic shock

description: Raw data of microcirculatory analysis of individual videos. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3642338_d1
title: Additional file 1: Table S1. of 
                     De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)

description: DEGs in G-treated oil palm roots compared to untreated roots. Table S2. DEGs in T-treated oil palm roots compared to untreated roots. Table S3. Fungal transcripts in oil palm transcriptomes. Table S4. List of qRT-PCR primers used for verification of DEGs. (XLSX 833 kb)
DOI: 10.6084/m9.figshare.c.3642503_d2
title: Additional file 2: of Nationwide study of factors associated with publicâ  s willingness to use home self-test kit for dengue fever in Malaysia

description: Dengue Public Nationwide. (SAV 1.07 mb)
DOI: 10.6084/m9.figshare.c.3642512_d1
title: Additional file 1: Figure S1. of 
                     Mycobacterium tuberculosis secretory proteins downregulate T cell activation by interfering with proximal and downstream T cell signalling events

description: (A-C) Lymphocyte transformation test for dose optimisation of Ag85A, ESAT-6 and H37Rv by using PBMCs of healthy individuals (N = 10) and pulmonary TB (N = 10) patients using H3-thymidine uptake assay. PHA and PPD were used as positive control and wells with unstimulated cells were taken as control. Lymphoproliferative responses of healthy individuals and pulmaonary TB patients were calculated using different concentration (2.5, 5, 7.5, 10, 15, μg/ml) of antigens. Bar diagram showing mean ± SEM of stimulation indices (S.I) of stimulated PBMC’s with different doses of PHA, PPD, A85A, ESAT-6 and H37Rv. S.I was calculated according to the formula: S I = Mean counts per minute of experimental wells Mean counts per minute of control wells $$ \mathrm{S}\mathrm{I}=\frac{\mathrm{Mean}\ \mathrm{counts}\ \mathrm{per}\ \mathrm{minute}\ \mathrm{of}\ \mathrm{experimental}\ \mathrm{wells}}{\mathrm{Mean}\ \mathrm{counts}\ \mathrm{per}\ \mathrm{minute}\ \mathrm{of}\ \mathrm{control}\ \mathrm{wells}} $$ (ZIP 160 kb)
DOI: 10.6084/m9.figshare.c.3642521_d1
title: MOESM1 of Systematic review of human immunodeficiency virus (HIV) knowledge measurement instruments used on the Arabian Peninsula

description: Additional file 1: Table S1. Articles on HIV/AIDS knowledge and attitudes questionnaires reviewed.
DOI: 10.6084/m9.figshare.c.3642524_d1
title: Additional file 2: of Multiplicative interaction of functional inflammasome genetic variants in determining the risk of gout

description: Genotype distributions. Excel file with genotype distributions in the European and Polynesian sample sets for each of the single nucleotide polymorphisms (SNPs) studied. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3642803_d1
title: Additional file 1: of Non-invasive assessment of adrenocortical activity as a measure of stress in giraffe (Giraffa camelopardalis)

description: Full dataset in Microsoft Excel workbook format. (XLSX 61Â kb)
DOI: 10.6084/m9.figshare.c.3642821_d4
title: Additional file 22: Table S10. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Genes whose expression in the founder lines matches founder effects (FDR &lt;0.05) in ± 1 Mb QTL intervals for PS. For each gene, chromosome (chr), test (high (H) or low (L)), P value (pval), q value (qval), and start and stop positions are given. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3642821_d5
title: Additional file 20: Table S8. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Suggestive loci (P &lt;0.63) for days to pollen shed (PS), ear height (EH), plant height (PH), and grain yield (GY). Each row reports the phenotype (Trait), the covariates (Cov) eventually used in the QTL scan, the name of the marker (Marker) and chromosome (Chr) of the current association, the genomic position (in bp) of the interval determined by a 2 LOD drop from the highest association (Top), and the left (Left bound) and right (Right bound) bounds of this interval. The percent of variance explained (Variance) and the maximum LOD score are also shown. To avoid duplication, when a peak position was unchanged after scanning with a covariate, the latter scan is the only reported. QTL are listed individually if separated by at least 50 markers with LOD score below the suggestive threshold. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3642821_d7
title: Additional file 21: Table S9. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Genes whose expression in the founder lines matches founder effects (FDR &lt;0.05) in ± 1 Mb QTL intervals for GY. For each gene, chromosome (chr), test (high (H) or low (L)), P value (pval), q value (qval), and start and stop positions are given. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3642821_d10
title: Additional file 8: Table S3. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: The genetic map of the MM population. (XLSX 2159 kb)
DOI: 10.6084/m9.figshare.c.3642821_d9
title: Additional file 11: Table S5. of Genetic properties of the MAGIC maize population: a new platform for high definition QTL mapping in Zea mays

description: Summary of power simulation results with varying sample sizes (100, 200, 300, 400, 500). For each simulated QTL, the effect and the variance explained are given. The power to detect each QTL is averaged on 400 independent runs (100 for each of MAF 0.125, 0.25, 0.375, and 0.5). Results are given for h 2 = 0.4 and 0.7. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3643070_d1
title: MOESM1 of What is normal? Next generation sequencing-driven analysis of the human circulating miRNAOme

description: Additional file 1: S1. Sheet 1: Comprehensive list of raw and normalised expression values for all plasma miRNAs detected. Raw Sequencing Dataâ  The raw sequencing data (in fastq format) supporting the results of this article is available in the Short Read Archive (SRA) repository, [SRP064104 http://www.ncbi.nlm.nih.gov/sra ]. Sheet 2: Experiment IDs, PubMed IDs and metadata relating to the publically accessible datasets accessed for result validation.