cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/133680
title: INS (Inertial Navigation System) data collected during research cruise SR1906 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199966.v1
title: Additional file 2: of Proof of concept in utilizing in-trans surface display system of Lactobacillus plantarum as mucosal tuberculosis vaccine via oral administration in mice

description: Table S2. Data set of whole cell ELISA of L. plantarum attached with ACERL for a four-day period. (XLSX 13 kb)
DOI: 10.7284/133681
title: INS (Inertial Navigation System) data collected during research cruise SR1906 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133663
title: Meteorological Station data collected during research cruise SR1906 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199954
title: Additional file 1: of Proof of concept in utilizing in-trans surface display system of Lactobacillus plantarum as mucosal tuberculosis vaccine via oral administration in mice

description: Table S1. Data set of L. plantarum Pa21 carrying ACERL antigen growth profiles. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.7199954.v1
title: Additional file 1: of Proof of concept in utilizing in-trans surface display system of Lactobacillus plantarum as mucosal tuberculosis vaccine via oral administration in mice

description: Table S1. Data set of L. plantarum Pa21 carrying ACERL antigen growth profiles. (XLSX 25 kb)
DOI: 10.7284/133668
title: Multibeam Echosounder data collected during research cruise SR1906 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199942
title: Additional file 2: of Optimal cutoff of pretreatment neutrophil-to-lymphocyte ratio in head and neck cancer patients: a meta-analysis and validation study

description: Raw data for validation study. (XLSX 71Â kb)
DOI: 10.7284/133669
title: Multibeam Echosounder data collected during research cruise SR1906 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199942.v1
title: Additional file 2: of Optimal cutoff of pretreatment neutrophil-to-lymphocyte ratio in head and neck cancer patients: a meta-analysis and validation study

description: Raw data for validation study. (XLSX 71Â kb)
DOI: 10.7284/133672
title: Multibeam Echosounder data collected during research cruise SR1906 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133673
title: Multibeam Echosounder data collected during research cruise SR1906 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199924
title: Additional file 1: of Mathematical modelling of vancomycin-resistant enterococci transmission during passive surveillance and active surveillance with contact isolation highlights the need to identify and address the source of acquisition

description: Raw incidence and prevalence data. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.7199924.v1
title: Additional file 1: of Mathematical modelling of vancomycin-resistant enterococci transmission during passive surveillance and active surveillance with contact isolation highlights the need to identify and address the source of acquisition

description: Raw incidence and prevalence data. (XLSX 15 kb)
DOI: 10.7284/133664
title: Singlebeam Echosounder data collected during research cruise SR1906 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133675
title: Winch data collected during research cruise SR1906 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199816
title: Three Betulaceae chloroplast genomes

description: By sequencing the chloroplast genomes of three Betulaceae species and performing multiple analyses, this study attempts to investigate the genome variation, develop high-resolution molecular markers, and resolve the biogeographic history.
DOI: 10.7284/133676
title: Winch data collected during research cruise SR1906 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199816.v1
title: Three Betulaceae chloroplast genomes

description: By sequencing the chloroplast genomes of three Betulaceae species and performing multiple analyses, this study attempts to investigate the genome variation, develop high-resolution molecular markers, and resolve the biogeographic history.
DOI: 10.7284/133677
title: Winch data collected during research cruise SR1906 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133690
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1907 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133685
title: Expendable Probe data collected during research cruise SR1907 using a Turo Quoll instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199762
title: Circular_Oriana.xlsx

description: <b>Fig. 1 </b>Average temperature and rainfall in the city of Uberlândia, Minas Gerais, Brazil, during the period from December of 2015 to November of 2016<b></b> <b>Fig. 3</b> Monthly percentage of vegetative and reproductive phenology intensity found in individuals of <i>S. polyanthus</i> in the hosts <i>C. canjerana polytricha</i>, <i>P. ramiflora</i> and <i>P. reticulata</i>, over a year, in a cerrado area in central Brazil. Bars represent percentage of Fournier intensity<br> <b>Fig. 4 </b>Circular scatterplots for the occurrence of sprouting leaves, developed leaves, falling leaves, flower buds, flowers and fruit in individuals of <i>S. polyanthus</i> in the hosts <i>C. canjerana polytricha</i>, <i>P. ramiflora</i> and <i>P. reticulata</i> in a cerrado area between December of 2015 and November of 2016. The black arrow between bars indicates the mean vector. All histograms show marked seasonality (P &lt; 0.001, Rayleigh test z), except the three histograms of developed leaves <b>Fig. 5</b> Number of a) flower buds and b) flowers (mean ± SD) produced by branches of <i>S. polyanthus</i>, separated by the factors host and sex, and average number of c) fruits (mean ± SD) produced by pistillate branches of <i>S. polyanthus</i>. a) Two-way ANOVA (F<sub>[2,24]</sub> = 0.345, P = 0.711), b) Two-way ANOVA (F<sub>[2,24]</sub> = 0.063, P = 0.938), c) Kruskal-Wallis (H<sub> </sub>= 43.12, P &lt; 0.001). Letters represent statistic difference between the groups by the post-hoc of Dunn. ***P &lt; 0.001 <b>Fig. 6 </b>Macronutrients and micronutrients found in the leaves of pistillate individuals of <i>S. polyanthus</i> in the hosts <i>C. canjerana polytricha</i>, <i>P. ramiflora</i> and <i>P. reticulata</i> in a cerrado area in central Brazil <b>Fig. 7 </b>Floral visitors of <i>Struthanthus polyanthus</i> in a cerrado area in central Brazil a) Total frequency of floral visitors<i> </i>in each host and mean values of temperature, relative air humidity and light intensity found at each observation time during the 2016 flowering period. Open circles represent temperature, filled circles represent humidity and triangles represent light intensity. b)<b> </b>Total frequency of floral visitors during the flowering period of 2016, considering the host species and the period of observation, χ<sup>2 </sup>= 18.33, df = 4; P = 0.0011. <b>Fig. 9 </b>Visitation of the flowers of <i>S. polyanthus</i> during the flowering period of 2016 considering each host species in a cerrado area in central Brazil: a), b) and c) number of visited flowers, d), e) and f) visit time per plant and g), h) and i) visit time per flower (mean ± SD). Black bars represent effective pollinators.<br>
DOI: 10.7284/133687
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1907 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133691
title: INS (Inertial Navigation System) data collected during research cruise SR1907 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199750
title: Ex situ conservation of threatened plants in Brazil: a strategic plan to achieve Target 8 of the Global Strategy for Plant Conservation

description: With increasing rates of habitat destruction and species loss, ex situconservation is gaining global momentum and reluctance in relying on ex situconservation is rapidly giving way to a more optimistic, strategic view. Target 8 of the Global Strategy of Plant Conservation calls for at least 75 percent of threatened plant species in accessible ex situ collections, preferably in the country of origin, and 20 percent of them included in recovery and restoration programs. Here, we provide updated information on Brazil’s progress towards Target 8 through a nationwide examination of how many threatened species were conserved in ex situcollections in Brazil. Our data comprised whole plants (living collections), seed (seed banks) and tissue cultures (in vitro). Of the 2,113 threatened species, at least 452 (21.4%) species were conserved in ex situcollections, an increase in 4% of living organisms and 96% of seed when compared to a previous assessment. Since it is unlikely Brazil will achieve Target 8 by 2020, we also discuss public policies and strategies to help overcome key bottlenecks preventing its achievement and propose revised goals for the GSPC 2020–2030
DOI: 10.7284/133699
title: INS (Inertial Navigation System) data collected during research cruise SR1907 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199750.v1
title: Ex situ conservation of threatened plants in Brazil: a strategic plan to achieve Target 8 of the Global Strategy for Plant Conservation

description: With increasing rates of habitat destruction and species loss, ex situconservation is gaining global momentum and reluctance in relying on ex situconservation is rapidly giving way to a more optimistic, strategic view. Target 8 of the Global Strategy of Plant Conservation calls for at least 75 percent of threatened plant species in accessible ex situ collections, preferably in the country of origin, and 20 percent of them included in recovery and restoration programs. Here, we provide updated information on Brazil’s progress towards Target 8 through a nationwide examination of how many threatened species were conserved in ex situcollections in Brazil. Our data comprised whole plants (living collections), seed (seed banks) and tissue cultures (in vitro). Of the 2,113 threatened species, at least 452 (21.4%) species were conserved in ex situcollections, an increase in 4% of living organisms and 96% of seed when compared to a previous assessment. Since it is unlikely Brazil will achieve Target 8 by 2020, we also discuss public policies and strategies to help overcome key bottlenecks preventing its achievement and propose revised goals for the GSPC 2020–2030
DOI: 10.7284/133700
title: INS (Inertial Navigation System) data collected during research cruise SR1907 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133701
title: INS (Inertial Navigation System) data collected during research cruise SR1907 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133682
title: Meteorological Station data collected during research cruise SR1907 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133688
title: Multibeam Echosounder data collected during research cruise SR1907 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199561
title: R scripts and protocols

description: Scripts and protocols used to generate the results, and data tables necessary to run the scripts.To run the code in these scripts, we recommend using the R studio interface and saving all scripts and the files in the data_tables.zip archive in a single folder. This folder should then be set as your working directory in R, for example:setwd("C://Users/keichenseer/data_tables")<br>
DOI: 10.7284/133689
title: Multibeam Echosounder data collected during research cruise SR1907 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199552
title: Tofacitinib for the treatment of ulcerative colitis

description: <b>Introduction</b>: New generations of small molecules are being developed for the treatment of ulcerative colitis. Among them, tofatinib (a Janus kinase (JAK) inhibitor) has demonstrated efficacy for inducing and maintaining remission and achieving mucosal healing with a reasonable safety profile. Oral administration is attractive for patients and lack of immunogenicity represents an advantage over biologic drugs. <b>Areas covered</b>: This review discusses the molecular aspects of the JAK-STAT pathway; the mechanism of action of tofacitinib pertinent to ulcerative colitis and the evidence on the efficacy of tofacitinib for achieving clinically relevant outcomes, including clinical remission, mucosal healing, and normalization of quality of life, as well as safety aspects with special attention to adverse events related to the mode of action of the drug. <b>Expert commentary</b>: Tofacitinib will be the first drug on the class of JAK inhibitors to be available for treatment of ulcerative colitis. The efficacy of the drug, with a rapid onset of action even in cases of severe colitis, oral administration, and possibility to use the drug intermittently without generating immunogenicity, will bring about a redesign of current treatment paradigms for ulcerative colitis.
DOI: 10.6084/m9.figshare.7199552.v1
title: Tofacitinib for the treatment of ulcerative colitis

description: <b>Introduction</b>: New generations of small molecules are being developed for the treatment of ulcerative colitis. Among them, tofatinib (a Janus kinase (JAK) inhibitor) has demonstrated efficacy for inducing and maintaining remission and achieving mucosal healing with a reasonable safety profile. Oral administration is attractive for patients and lack of immunogenicity represents an advantage over biologic drugs. <b>Areas covered</b>: This review discusses the molecular aspects of the JAK-STAT pathway; the mechanism of action of tofacitinib pertinent to ulcerative colitis and the evidence on the efficacy of tofacitinib for achieving clinically relevant outcomes, including clinical remission, mucosal healing, and normalization of quality of life, as well as safety aspects with special attention to adverse events related to the mode of action of the drug. <b>Expert commentary</b>: Tofacitinib will be the first drug on the class of JAK inhibitors to be available for treatment of ulcerative colitis. The efficacy of the drug, with a rapid onset of action even in cases of severe colitis, oral administration, and possibility to use the drug intermittently without generating immunogenicity, will bring about a redesign of current treatment paradigms for ulcerative colitis.
DOI: 10.7284/133684
title: Singlebeam Echosounder data collected during research cruise SR1907 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199516
title: JEcol-2018-0732 - Data archiving

description: Dataset related to phenological data, floral visitors and hemiparasite plant fitness in three different host plants.<br><br>
DOI: 10.6084/m9.figshare.7199561.v1
title: R scripts and protocols

description: Scripts and protocols used to generate the results.
DOI: 10.6084/m9.figshare.7199516.v1
title: JEcol-2018-0732 - Data archiving

description: Dataset related to phenological data, floral visitors and hemiparasite plant fitness in three different host plants.<br><br>
DOI: 10.7284/133695
title: Winch data collected during research cruise SR1907 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199510
title: Taxon table and metadata file for Santa Monica Mountains eDNA samples (16S and plant-ITS metabarcodes sequenced)

description: As part of a research-intensive undergraduate microbiology course at UCLA, students collected soil samples from areas of the Santa Monica Mountains that were or were not burned during the recent Skirball Fire. DNA was extracted using the MoBio Soil DNA Extraction kit, and the 16S and plant-ITS2 regions were PCR amplified (using primers from Caporaso et al. 2012 and Gu et al. 2013, respectively). The samples were sequenced on an Illumina MiSeq and processed using the Anacapa toolkit (https://github.com/limey-bean/Anacapa).<br><br>mimg_109_w18_taxonomyTable_PITS.txt and mimg_109_w18_taxonomyTable_16S.txt contain taxonomy data formatted as an Anacapa output file. Sample metadata are available in mimg_109_w18_metadata.txt. These files were generated for visualizing results in the Shiny-app Ranacapa (https://gauravsk.shinyapps.io/ranacapa)<br>
DOI: 10.6084/m9.figshare.7199510.v1
title: Taxon table and metadata file for Santa Monica Mountains eDNA samples (16S and plant-ITS metabarcodes sequenced)

description: As part of a research-intensive undergraduate microbiology course at UCLA, students collected soil samples from areas of the Santa Monica Mountains that were or were not burned during the recent Skirball Fire. DNA was extracted using the MoBio Soil DNA Extraction kit, and the 16S and plant-ITS2 regions were PCR amplified (using primers from Caporaso et al. 2012 and Gu et al. 2013, respectively). The samples were sequenced on an Illumina MiSeq and processed using the Anacapa toolkit (https://github.com/limey-bean/Anacapa).<br><br>mimg_109_w18_taxonomyTable_PITS.txt and mimg_109_w18_taxonomyTable_16S.txt contain taxonomy data formatted as an Anacapa output file. Sample metadata are available in mimg_109_w18_metadata.txt. These files were generated for visualizing results in the Shiny-app Ranacapa (https://gauravsk.shinyapps.io/ranacapa)<br>
DOI: 10.6084/m9.figshare.7199561.v2
title: R scripts and protocols

description: Scripts and protocols used to generate the results, and data tables necessary to run the scripts.Save the files in the data_tables.zip folder in your R working directory to run the R scripts.
DOI: 10.7284/133696
title: Winch data collected during research cruise SR1907 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199480
title: Extra replicates for KV titre in Dif mutants (Figure 1D)

description: Extra replicates done in a seperate experiment for Dif mutants in Figure 1D.<br>
DOI: 10.6084/m9.figshare.7199480.v1
title: Extra replicates for KV titre in Dif mutants (Figure 1D)

description: Extra replicates done in a seperate experiment for Dif mutants in Figure 1D.<br>
DOI: 10.6084/m9.figshare.7199561.v3
title: R scripts and protocols

description: Scripts and protocols used to generate the results, and data tables necessary to run the scripts.Save the files in the data_tables.zip folder in your R working directory to run the R scripts.
DOI: 10.6084/m9.figshare.7199477
title: Taxon table and metadata file for Channel Islands eDNA samples (mitochondrial 12S and CO1 metabarcodes sequenced)

description: Thirty 1-Liter water samples were collected inside and outside permanent monitoring areas in the Channel Islands National Park. DNA was extracted using the Qiagen DNeasy kit, modified according to Spens et al. 2017. The mitochondrial 12S and CO1 gene regions were PCR amplified (using primers from Miya et al. 2015 and Leray et al. 2013, respectively). The samples were sequenced on an Illumina MiSeq and processed using the Anacapa toolkit (https://github.com/limey-bean/Anacapa).<br>channel-islands-taxon-table.txt is formatted as an Anacapa output file; the same data is available in BIOM format in channel-islands-taxon-table.biom. Sample metadata are available in channel-islands-metadata.txt. https://gauravsk.shinyapps.io/ranacapa
DOI: 10.7284/133697
title: Winch data collected during research cruise SR1907 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199561.v4
title: R scripts and protocols

description: Scripts and protocols used to generate the results, and data tables necessary to run the scripts.To run the code in these scripts, we recommend using the R studio interface and saving all scripts and the files in the data_tables.zip archive in a single folder. This folder should then be set as your working directory in R, for example:setwd("C://Users/keichenseer/data_tables")<br>
DOI: 10.7284/133706
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1908 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133704
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1908 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7199561.v5
title: R scripts and protocols

description: Scripts and protocols used to generate the results, and data tables necessary to run the scripts.To run the code in these scripts, we recommend using the R studio interface and saving all scripts and the files in the data_tables.zip archive in a single folder. This folder should then be set as your working directory in R, for example:setwd("C://Users/keichenseer/data_tables")<br>
DOI: 10.7284/133707
title: INS (Inertial Navigation System) data collected during research cruise SR1908 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition