cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9kv29b
title: Occurrence Download

description: A dataset containing 3869 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.datasetkey = '744edc21-8dd2-474e-8a0b-b8c3d56a3c2d'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 3869 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064547-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/3pp99t
title: A new invasive freshwater mussel: Discovery of a non-native population of Pilsbryoconcha exilis (Lea, 1838) in Myanmar (Bivalvia: Unionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bolotov, Ivan N., Konopleva, Ekaterina S., Lunn, Zau, Chan, Nyein, Kyi, Chuu Ti, Gofarov, Mikhail Y., Chelpanovskaya, Olesya A., Vikhrev, Ilya V., Kondakov, Alexander V. (2024): A new invasive freshwater mussel: Discovery of a non-native population of Pilsbryoconcha exilis (Lea, 1838) in Myanmar (Bivalvia: Unionidae). Ecologica Montenegrina 78: 107-118, DOI: 10.37828/em.2024.78.12, URL: https://doi.org/10.37828/em.2024.78.12AbstractThe present study reports on the first record of a non-native population of the freshwater mussel Pilsbryoconcha exilis (Lea, 1838) (Bivalvia: Unionidae) in Myanmar. It was discovered from irrigation canals that are situated in the Delta Region of the Ayeyarwady River. Based on approximate age estimates and information from local villagers, this population was probably established in 2019-2020. The DNA sequence data reveals that the Ayeyarwady population shares a single COI haplotype and that this haplotype was previously recorded from the Udon Thani Province of Thailand (Mekong River drainage). Based on this evidence, we could assume that P. exilis was introduced to Myanmar from Thailand. Our new findings expand the global checklist of invasive freshwater mussels that currently contains 17 species.
DOI: 10.15468/uz3uwg
title: The worldwide occurrence of Sceliphron caementarium (Drury, 1773) outside its native range, with new records (Hymenoptera: Sphecidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ceccolini, Filippo (2023): The worldwide occurrence of Sceliphron caementarium (Drury, 1773) outside its native range, with new records (Hymenoptera: Sphecidae). Zootaxa 5242 (1): 1-63, DOI: 10.11646/zootaxa.5242.1.1, URL: http://dx.doi.org/10.11646/zootaxa.5242.1.1AbstractSceliphron caementarium (Drury, 1773) is a Nearctic mud-dauber wasp, accidentally introduced in various parts of the world. All literature records of its distribution outside its native range are summarized and many new records are provided, showing the quick spreading of this species. The countries and the islands in which Sceliphron caementarium occurs are summarized and ordered chronologically according to the date of the first record. The occurrence of the species is first recorded for Argentina, Oman, mainland Spain, the small country of San Marino and the archipelagos of Azores, Canary Islands, and Cayman Islands. Moreover, overall 56 new regions in several countries and 14 new islands are added to those from which the species was previously known. In Russia, the first record of the species is backdated to 2019.
DOI: 10.15468/78xnt3
title: A New Moustache Wasp in Dominican Amber, with an Account of Apoid Wasp Evolution Emphasizing Crabroninae (Hymenoptera: Crabronidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article BENNETT, DANIEL J, ENGEL, MICHAEL S (2006): A New Moustache Wasp in Dominican Amber, with an Account of Apoid Wasp Evolution Emphasizing Crabroninae (Hymenoptera: Crabronidae). American Museum Novitates 3529 (1): 1-12, DOI: 10.1206/0003-0082(2006)3529[1:ANMWID]2.0.CO;2, URL: http://www.bioone.org/perlserv/?request=get-abstract&doi=10.1206%2F0003-0082(2006)3529%5B1%3AANMWID%5D2.0.CO%3B2ABSTRACTA new, extinct species of the wasp genus Lindenius (Crabroninae: Crabronini: Crabronina) is described and figured from two exquisitely preserved specimens discovered in Early Miocene Dominican amber. Lindenius paleomystax, new species, represents the first record for the tribe Crabronini in Dominican amber and the southernmost record for the genus in the New World. The unique locality and habitat data begin to reveal a more complicated natural history for the genus than that suggested by Recent taxa alone. A checklist of fossil apoid wasps in amber is provided and the new species is discussed within the context of an overview of apoid wasp origins and evolution.
DOI: 10.15468/hn4ru4
title: Morphological, genome-size and molecular analyses of Apostasia fogangica (Apostasioideae, Orchidaceae), a new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Yin, Ya-Yi, Zhong, Ping-Sheng, Zhang, Guo-Qiang, Chen, Li-Jun, Zeng, Si-Jin, Li, Ming-He, Liu, Zhong-Jian (2016): Morphological, genome-size and molecular analyses of Apostasia fogangica (Apostasioideae, Orchidaceae), a new species from China. Phytotaxa 277 (1): 59-67, DOI: 10.11646/phytotaxa.277.1.5, URL: http://dx.doi.org/10.11646/phytotaxa.277.1.5AbstractAfter examining morphological, molecular and genome-size evidence, we describe and illustrate a new orchid species, Apostasia fogangica, from Guangdong, China. Morphological comparisons indicate that A. fogangica is similar to A. shenzhenica, although the habit, leaves, inflorescences and fruit shapes and sizes differ. Comparison of the genome sizes in Apostasioideae show that A. fogangica is 1C=0.952 pg, which is double the size of A. shenzhenica but close to that of A. wallichii. Molecular analyses from combined nuclear and plastid datasets (ITS, matK and trnL-F) indicate that A. fogangica is sister to A. nipponica plus A. shenzhenica. The morphological, genome-size and molecular evidence support the hypothesis that A. fogangica is a new species.
DOI: 10.5281/zenodo.16757527
title: Site MD10-3340 amino acid δ15N record over the last 140 ka

description: This dataset includes organic content and amino acid δ15N data of Site MD10-3340 and grazing proportion calculation. Site MD10-3340 (00°30.98′S, 128°43.47′E) locates at the Halmahera Sea in the western equatorial Pacific at a water depth of 1094 m, recovered with a giant piston corer during the MD181 MONOCIR cruise in 2010. The uppermost 17 m of this core were analyzed, covering the last 140 ka. Organic carbon and organic nitrogen content of the sediments were measured after removing carbonates and clay minerals, using 72 samples from this site. Fifty-one samples from this site were used for amino acids δ15N analyses, which includes pretreatment with acid hydrolyzation, purification, and derivatization, following measurement with GC-IRMS. The concentration and δ15N are obtained for 4-9 individual amino acids in each sample, including: glycine (Gly), valine (Val), serine (Ser), threonine (Thr), asparagine (Asp), glutamic acid (Glu), phenylalanine (Phe), lysine (Lys), and tyrosine (Tyr). To quantitatively reflect changes in trophic structure, the grazing proportion is calculated using amino acids δ15N of phenylalanine and glutamic acid, following the setting of an idealized ecosystem model. All pretreatments and measurements in this study are conducted at Tongji University in Shanghai.

In this new version, propagated standard error of Fphyto and GR are calculated based on the reproducibility of δ15NGlu and δ15NPhe in this study, using monte carlo method (sampling size = 106).
DOI: 10.5281/zenodo.18043245
title: Site MD10-3340 amino acid δ15N record over the last 140 ka

description: This dataset includes organic content and amino acid δ15N data of Site MD10-3340 and grazing proportion calculation. Site MD10-3340 (00°30.98′S, 128°43.47′E) locates at the Halmahera Sea in the western equatorial Pacific at a water depth of 1094 m, recovered with a giant piston corer during the MD181 MONOCIR cruise in 2010. The uppermost 17 m of this core were analyzed, covering the last 140 ka. Organic carbon and organic nitrogen content of the sediments were measured after removing carbonates and clay minerals, using 72 samples from this site. Fifty-one samples from this site were used for amino acids δ15N analyses, which includes pretreatment with acid hydrolyzation, purification, and derivatization, following measurement with GC-IRMS. The concentration and δ15N are obtained for 4-9 individual amino acids in each sample, including: glycine (Gly), valine (Val), serine (Ser), threonine (Thr), asparagine (Asp), glutamic acid (Glu), phenylalanine (Phe), lysine (Lys), and tyrosine (Tyr). To quantitatively reflect changes in trophic structure, the grazing proportion is calculated using amino acids δ15N of phenylalanine and glutamic acid, following the setting of an idealized ecosystem model. All pretreatments and measurements in this study are conducted at Tongji University in Shanghai.

In this new version, propagated standard error of Fphyto and GR are calculated based on the reproducibility of δ15NGlu and δ15NPhe in this study, using monte carlo method (sampling size = 106).
DOI: 10.15468/4xa22q
title: GEOGRAPHIC DISTRIBUTION, GENETIC DIVERSITY, AND CONSERVATION STATUS OF THE SOUTHERN FLYING SQUIRREL (GLAUCOMYS VOLANS) IN MÉXICO

description: This dataset contains the digitized treatments in Plazi based on the original journal article GERARDO CEBALLOS, PATRICIA MANZANO, FRANCISCA M. MÉNDEZ-HARCLERODE, MICHELLE L. HAYNIE, DAVID H. WALKER, ROBERT D. BRADLEY (2010): GEOGRAPHIC DISTRIBUTION, GENETIC DIVERSITY, AND CONSERVATION STATUS OF THE SOUTHERN FLYING SQUIRREL (GLAUCOMYS VOLANS) IN MÉXICO. Occasional Papers of the Museum 299: 1-18, DOI: 10.5281/zenodo.15778111ABSTRACTEcological surveys were conducted in central México to assess parameters associated with the distribution, habitat preference, and nesting sites of the southern flying squirrel (Glaucomys volans). These surveys indicated that deforestation and harvesting of mature oak trees has depopulated flying squirrels from a large portion of their historic range. DNA sequences obtained from the mitochondrial control region were used to evaluate genetic divergence among four populations in central and southern México. Levels of intrapopulation genetic variation were greatest in the Chapa de Mota, México population (average genetic distance = 2.8%), whereas interpopulational comparisons showed the Chapa de Mota, México population to be the most different from the Floresta, Chiapas population (average genetic distance = 4.1%). Results indicate that substantial genetic variation exists between populations in southern México and suggests either a historical bottleneck associated with the Isthmus of Tehuantepec in Chiapas or more widespread gene flow across central México influenced by the Sierra Madre Oriental and Trans-Mexican Volcanic Zone. Conservation efforts are needed, especially in southern México, to preserve populations of southern flying squirrels threatened by habitat loss.Key words: conservation, flying squirrels, genetic diversity, Glaucomys volans, México
DOI: 10.15468/vm4pj6
title: Towards a standardisation of morphological measurements in the phylum Kinorhyncha

description: This dataset contains the digitized treatments in Plazi based on the original journal article González-Casarrubios, Alberto, Cepeda, Diego, Pardos, Fernando, Neuhaus, Birger, Yamasaki, Hiroshi, Herranz, María, Grzelak, Katarzyna, Maiorova, Anastassya, Adrianov, Andrey, Dal Zotto, Matteo, Di Domenico, Maikon, Landers, Stephen C., Sánchez, Nuria (2023): Towards a standardisation of morphological measurements in the phylum Kinorhyncha. Zoologischer Anzeiger 302: 217-223, DOI: 10.1016/j.jcz.2022.11.015, URL: http://dx.doi.org/10.1016/j.jcz.2022.11.015
DOI: 10.15468/h5w6mj
title: A new species of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Biligirirangan Hills of Southern India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Narayanan, Surya, NA, Aravind (2022): A new species of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Biligirirangan Hills of Southern India. Vertebrate Zoology 72: 823-837, DOI: http://dx.doi.org/10.3897/vz.72.e89324, URL: http://dx.doi.org/10.3897/vz.72.e89324
DOI: 10.15468/s5hunr
title: Eriotheca paganuccii (Bombacoideae, Malvaceae), a new endangered species from montane forests in the Atlantic Forest of Bahia, northeastern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carvalho-Sobrinho, Jefferson, da Mota, Aline C., Dorr, Laurence J. (2024): Eriotheca paganuccii (Bombacoideae, Malvaceae), a new endangered species from montane forests in the Atlantic Forest of Bahia, northeastern Brazil. PhytoKeys 243: 215-230, DOI: 10.3897/phytokeys.243.125708AbstractA new species of Eriotheca (Bombacoideae, Malvaceae) from montane wet forests in the Atlantic Forest of Bahia, northeastern Brazil, is described and illustrated. It is known from only three populations situated between 750 m and 850 m in elevation on mountain summits and categorized as Endangered (EN) based on IUCN criteria. Eriotheca paganuccii is distinct from all congeners by the combination of coriaceous to strongly coriaceous leaves and remarkable few-seeded, globose to subglobose woody capsules that contain scanty kapok and the largest seeds known in the genus to date. The affinities of E. paganuccii to morphologically similar species as well as the importance of obtaining phenologically complete collections are discussed.
DOI: 10.15468/et99nc
title: Integrative analysis reveals cryptic speciation linked to habitat differentiation within Albanian populations of the anomalous blues (Lepidoptera, Lycaenidae, Polyommatus Latreille, 1804)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Parmentier, Laurian, Vila, Roger, Lukhtanov, Vladimir (2022): Integrative analysis reveals cryptic speciation linked to habitat differentiation within Albanian populations of the anomalous blues (Lepidoptera, Lycaenidae, Polyommatus Latreille, 1804). Comparative Cytogenetics 16 (4): 211-242, DOI: http://dx.doi.org/10.3897/CompCytogen.v16.i4.90558, URL: http://dx.doi.org/10.3897/CompCytogen.v16.i4.90558
DOI: 10.15468/cnxct6
title: A new cave-dwelling species of Trimma (Teleostei, Gobiidae) from the Red Sea, with notes on Red Sea endemism in Trimma spp.

description: This dataset contains the digitized treatments in Plazi based on the original journal article Peinemann, Viktor N., Pombo-Ayora, Lucia, Rich, Walter A., Fox, Michael D., Coker, Darren J. (2025): A new cave-dwelling species of Trimma (Teleostei, Gobiidae) from the Red Sea, with notes on Red Sea endemism in Trimma spp. ZooKeys 1255: 77-93, DOI: 10.3897/zookeys.1255.159341AbstractA new species of the gobiid genus Trimma is described from the Farasan Banks in the southeastern Red Sea. The new species is characterized by having a predorsal midline with 7–8 scales, the fifth pelvic-fin ray unbranched, cheek and opercle scaleless, all pectoral-fin rays unbranched, and a dorsal fin VI + I, 7, without elongate spines. In life, the species is bright yellow throughout, with a distinctive yellow-green longitudinal band in the central third of the dorsal fins. The new species inhabits caves on exposed offshore reefs at depths between 15 and 30 m where it occurs in small groups of up to 10 individuals. The new species appears to be sister to T. winchi from the western Indian Ocean. We also present a multilocus phylogeny (COI, 16 S, Ptr, S 7 I 1), including all known Red Sea Trimma and 21 non-Red Sea species, and an expanded supermatrix tree with 93 species to place Red Sea endemism in broader context. This brings the total number of Trimma species known from the Red Sea to 10, with eight appearing to be endemic to the region. The high proportion of endemism in the genus is noteworthy, even for the Red Sea, which has one of the highest proportions of endemic reef fishes in the Indo-Pacific. Moreover, K 2 P distances in the two widespread species suggest they may also represent cryptic endemic species, but further analyses are needed. The new species is currently known only from the Farasan Banks region despite extensive sampling along the Saudi Arabian Red Sea coast.
DOI: 10.15468/5skcnb
title: Oribates fuscipes

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Koch, C. L. (1844): Oribates fuscipes. In: Deutschlands Crustaceen, Arachniden und Myriopoden. Regensburg: Pustet: 1-2, URL: http://www.biologie.uni-ulm.de/cgi-bin/objekt.pl?id=73648&lang=e&sid=T
DOI: 10.15468/n6n3zu
title: Description of a new karst-adapted species of the subgenus Japonigekko (Squamata: Gekkonidae: Gekko) from Guangxi, southern China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Hao-Tian, Qi, Shuo, Zhou, Dan-Yang, Wang, Ying-Yong (2024): Description of a new karst-adapted species of the subgenus Japonigekko (Squamata: Gekkonidae: Gekko) from Guangxi, southern China. Vertebrate Zoology 74: 121-132, DOI: http://dx.doi.org/10.3897/vz.74.e113899, URL: http://dx.doi.org/10.3897/vz.74.e113899
DOI: 10.15468/dr6aqe
title: Thunbergia impatienoides (Acanthaceae), a new species from Thailand

description: This dataset contains the digitized treatments in Plazi based on the original journal article Suwanphakdee, C., Vajrodaya, S. (2018): Thunbergia impatienoides (Acanthaceae), a new species from Thailand. Blumea 63 (1): 20-25, DOI: 10.3767/blumea.2018.63.01.03, URL: https://doi.org/10.3767/blumea.2018.63.01.03
DOI: 10.15468/s5h9md
title: Haplopteris yakushimensis (Pteridaceae, Vittarioideae), a new species from Yakushima Island, Japan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Cheng Wei, Ebihara, Atsushi, Chiou, Wen Liang, Li, Chia Wei (2014): Haplopteris yakushimensis (Pteridaceae, Vittarioideae), a new species from Yakushima Island, Japan. Phytotaxa 156 (4): 229-234, DOI: 10.11646/phytotaxa.156.4.5, URL: http://dx.doi.org/10.11646/phytotaxa.156.4.5AbstractA new species of vittarioid ferns (Pteridaceae) that has long been regarded as Haplopteris amboinensis or H. forrestiana (a synonym of H. doniana), is described here as Haplopteris yakushimensis. Both macro- and micromorphological characteristics were compared with these two species. Chartaceous matured fronds, shallowly grooved adaxial costae and obtuse carinate abaxial costae are the diagnostic characteristics that distinguish H. yakushimensis from the other species in the genus. A phylogeny based on plastid regions chlL, ndhF and matK of 14 East-Asian Haplopteris species, including our new taxon is presented here.
DOI: 10.15468/dl.m3h55u
title: Occurrence Download

description: A dataset containing 789519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((1.29573 41.89258,2.79899 41.89258,2.79899 42.64381,1.29573 42.64381,1.29573 41.89258))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2020-2025"
 ]
}

 The dataset includes 789519 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064539-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14277569
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/3fxvf5
title: An Amazonian hidden gem: a new metallic-colored species of Ranitomeya (Anura, Dendrobatidae) from Juruá River basin forests, Amazonas state, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mônico, Alexander Tamanini, Koch, Esteban Diego, Dayrell, Jussara Santos, Moravec, Jiří, Lima, Albertina Pimentel (2025): An Amazonian hidden gem: a new metallic-colored species of Ranitomeya (Anura, Dendrobatidae) from Juruá River basin forests, Amazonas state, Brazil. ZooKeys 1236: 51-83, DOI: 10.3897/zookeys.1236.146533AbstractThe genus Ranitomeya has 16 known species, and the last of them was described 13 years ago. The forests of the Juruá River basin are known for their enormous vertebrate diversity, despite being one of the least sampled regions in the entire Amazonia. Our recent expeditions to the region resulted in the discovery of a Ranitomeya species with blue-green dorsal stripes and quite peculiar behavior. Here, it is described as a new species using morphological, morphometric, advertisement call, natural history, and genetic data. This new species is strongly nested within the R. vanzolinii clade, with interspecific p - distances ranging from 2.94 to 3.91 %, and it was confirmed in all the delimitation methods used. It differs from its closest relatives mainly by (i) its size (male SVL 15.4–17.7 mm, n = 8; female SVL 17.3–18.5 mm, n = 5), (ii) its unique color pattern that is metallic pale yellowish green to metallic pale turquoise-green dorsal stripes pattern, limbs metallic chrome with dark carmine spotting), (iii) presence of a conspicuous sulfur yellow spot on the dorsal surface of the thighs, (iv) tadpoles with posterior tooth rows P 1&gt; P 2&gt; P 3 in all stages, head translucent brownish and lack of emarginate lateral papillae, and (v) its advertisement call (composed of 21–45 notes, call duration of 647–1,424 ms, note rate of 28–36 notes / s and dominant frequency of 4,996 –6,288 Hz).
DOI: 10.15468/ksqwwh
title: Bulbophyllum salweenensis (Orchidaceae; Epidendroideae; Malaxideae), a new species from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhou, Ting-Ting, Jin, Xiao-Hua (2015): Bulbophyllum salweenensis (Orchidaceae; Epidendroideae; Malaxideae), a new species from Yunnan, China. Phytotaxa 234 (1): 95-97, DOI: 10.11646/phytotaxa.234.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.234.1.8