cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5777133.v1
title: Additional file 13: Table S5. of A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence

description: A MiR expression differences between induced (3d ON) and non-induced (OFF) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. b MiR expression differences between induced (6d ON) and non-induced (OFF) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. c MiR expression differences between "escaped" (ESC) and non-induced (OFF) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. d MiR expression differences between 3-day induced (3d ON) and 6-day induced (6d ON) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. e MiR expression differences between "escaped" (ESC) and induced (3d ON) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. f MiR expression differences between "escaped" (ESC) and induced (6d ON) HBEC CDC6 Tet-ON cells. FWER - Bonferroni-adjusted p value. (XLSX 134 kb)
DOI: 10.6084/m9.figshare.5777109
title: Additional file 4: of Prevalence and antibiotic susceptibility of Uropathogens from cases of urinary tract infections (UTI) in Shashemene referral hospital, Ethiopia

description: Table S2. The proportion of sensitive, intermediate and resistant bacterial isolates to eleven different antibiotics. The table indicates the sensitivity of isolates to various antibiotics used in the study. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.5777109.v1
title: Additional file 4: of Prevalence and antibiotic susceptibility of Uropathogens from cases of urinary tract infections (UTI) in Shashemene referral hospital, Ethiopia

description: Table S2. The proportion of sensitive, intermediate and resistant bacterial isolates to eleven different antibiotics. The table indicates the sensitivity of isolates to various antibiotics used in the study. (XLSX 41Â kb)
DOI: 10.6084/m9.figshare.5777106
title: Additional file 4: Table S4. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Data including TPM and FDR of Anisakis simplex (s.s.) (AS) and Anisakis pegreffii (AP) differentially expressed genes (DEGs) in the whole larva (WL) and in the pharynx (PX). (XLSX 197 kb)
DOI: 10.6084/m9.figshare.5777106.v1
title: Additional file 4: Table S4. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Data including TPM and FDR of Anisakis simplex (s.s.) (AS) and Anisakis pegreffii (AP) differentially expressed genes (DEGs) in the whole larva (WL) and in the pharynx (PX). (XLSX 197 kb)
DOI: 10.6084/m9.figshare.5777097
title: Additional file 1: Table S1. of Chlorophyll fluorescence analysis revealed essential roles of FtsH11 protease in regulation of the adaptive responses of photosynthetic systems to high temperature

description: Summary of the IC and LC chlorophyll fluorescence parameters in Col-0 WT and FtsH11 mutant salk033047 plants in response to the 30Â Â°C-treatment. Definition for the Chl fluorescence parameters and their calculation equations are provided in the second sheet. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5777097.v1
title: Additional file 1: Table S1. of Chlorophyll fluorescence analysis revealed essential roles of FtsH11 protease in regulation of the adaptive responses of photosynthetic systems to high temperature

description: Summary of the IC and LC chlorophyll fluorescence parameters in Col-0 WT and FtsH11 mutant salk033047 plants in response to the 30Â Â°C-treatment. Definition for the Chl fluorescence parameters and their calculation equations are provided in the second sheet. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.5777091
title: Additional file 3: of Prevalence and antibiotic susceptibility of Uropathogens from cases of urinary tract infections (UTI) in Shashemene referral hospital, Ethiopia

description: Tables S1. Univariate and Multivariate logistic regression of risk factors pertinent to females for the prevalence of UTI. Univariate and multivariate logistic regression were used to correlate risk factors and prevalence of UTI. Except diaphragm use, the rest risk factors have significant association with prevalence of UTI in females. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.5777091.v1
title: Additional file 3: of Prevalence and antibiotic susceptibility of Uropathogens from cases of urinary tract infections (UTI) in Shashemene referral hospital, Ethiopia

description: Tables S1. Univariate and Multivariate logistic regression of risk factors pertinent to females for the prevalence of UTI. Univariate and multivariate logistic regression were used to correlate risk factors and prevalence of UTI. Except diaphragm use, the rest risk factors have significant association with prevalence of UTI in females. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.5777088
title: Additional file 11: Table S4. of A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence

description: A Upregulated genes in induced (ON) HBEC CDC6 Tet-ON cells. b Down regulated genes in induced (ON) HBEC CDC6 Tet-ON cells. c Upregulated genes in ESCAPED (ESC) HBEC CDC6 Tet-ON cells. d: Down regulated genes in ESCAPED (ESC) HBEC CDC6 Tet-ON cells. (XLSX 630Â kb)
DOI: 10.6084/m9.figshare.5777088.v1
title: Additional file 11: Table S4. of A prototypical non-malignant epithelial model to study genome dynamics and concurrently monitor micro-RNAs and proteins in situ during oncogene-induced senescence

description: A Upregulated genes in induced (ON) HBEC CDC6 Tet-ON cells. b Down regulated genes in induced (ON) HBEC CDC6 Tet-ON cells. c Upregulated genes in ESCAPED (ESC) HBEC CDC6 Tet-ON cells. d: Down regulated genes in ESCAPED (ESC) HBEC CDC6 Tet-ON cells. (XLSX 630Â kb)
DOI: 10.6084/m9.figshare.5777082
title: Additional file 3: Table S3. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Anisakis pegreffii transcript sequences and, where available, corresponding peptides and annotation information, and differentially expressed genes (DEGs) upregulated in the whole larva (WL) and in the pharynx (PX). (XLSX 170 kb)
DOI: 10.6084/m9.figshare.5777082.v1
title: Additional file 3: Table S3. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Anisakis pegreffii transcript sequences and, where available, corresponding peptides and annotation information, and differentially expressed genes (DEGs) upregulated in the whole larva (WL) and in the pharynx (PX). (XLSX 170 kb)
DOI: 10.6084/m9.figshare.5777061
title: Additional file 2: Table S2. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Annotation information of Anisakis simplex (s.s.) (AS) differentially expressed genes (DEGs) in the whole larva (WL) and in the pharynx (PX). Corresponding peptide sequences are also included. (XLSX 9154 kb)
DOI: 10.6084/m9.figshare.5777061.v1
title: Additional file 2: Table S2. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Annotation information of Anisakis simplex (s.s.) (AS) differentially expressed genes (DEGs) in the whole larva (WL) and in the pharynx (PX). Corresponding peptide sequences are also included. (XLSX 9154 kb)
DOI: 10.6084/m9.figshare.5777043
title: Additional file 1: Table S1. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Putative orthologs of Anisakis simplex (s.s.) (AS) identified in the transcriptome of Anisakis pegreffii (AP) and vice versa. (XLS 3657 kb)
DOI: 10.6084/m9.figshare.5777043.v1
title: Additional file 1: Table S1. of Tissue-specific transcriptomes of Anisakis simplex (sensu stricto) and Anisakis pegreffii reveal potential molecular mechanisms involved in pathogenicity

description: Putative orthologs of Anisakis simplex (s.s.) (AS) identified in the transcriptome of Anisakis pegreffii (AP) and vice versa. (XLS 3657 kb)
DOI: 10.6084/m9.figshare.5776989
title: On the importance of accounting for intraspecific genomic relatedness in multi-species studies

description: Processed sequence data from Genotyping-by-sequencing (GBS), raw budburst data, R scripts, and other relevant information.<br>Analyses are described in Joly, Flynn and Wolkkovich. (accepted). On the importance of accounting for intraspecific genomic relatedness in multi-species studies. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5776989.v1
title: On the importance of accounting for intraspecific genomic relatedness in multi-species studies

description: Processed sequence data from Genotyping-by-sequencing (GBS), raw budburst data, R scripts, and other relevant information.<br>Analyses are described in Joly, Flynn and Wolkkovich. (accepted). On the importance of accounting for intraspecific genomic relatedness in multi-species studies. Methods in Ecology and Evolution.
DOI: 10.6084/m9.figshare.5776917
title: Timelapse 4 - raw confocal files

description: See accompanying word documents<br>
DOI: 10.6084/m9.figshare.5776917.v1
title: Timelapse 4 - raw confocal files

description: See accompanying word documents<br>
DOI: 10.6084/m9.figshare.5776917.v3
title: Timelapse 4 - raw confocal files

description: See accompanying word documents<br>
DOI: 10.6084/m9.figshare.5776917.v2
title: Timelapse 4 - raw confocal files

description: See accompanying word documents<br>
DOI: 10.6084/m9.figshare.5776905
title: jv_optoelectronic.json

description: We perform high-throughput density functional theory (DFT) calculation of optoelectronic properties (electronic bandgap and frequency dependent dielectric function) using OptB88vDW (OPT) and Tran-Blaha modified Becke Johnson potential (MBJ) potential. This data is distributed publicly through JARVIS-DFT database. We used this data to evaluate the differences between these two formalisms and quantify their accuracy comparing to experimental data whenever applicable. The data is available at our website: http://www.ctcms.nist.gov/~knc6/JVASP.html . <br>
DOI: 10.6084/m9.figshare.5776905.v1
title: jv_optoelectronic.json

description: We perform high-throughput density functional theory (DFT) calculation of optoelectronic properties (electronic bandgap and frequency dependent dielectric function) using OptB88vDW (OPT) and Tran-Blaha modified Becke Johnson potential (MBJ) potential. This data is distributed publicly through JARVIS-DFT database. We used this data to evaluate the differences between these two formalisms and quantify their accuracy comparing to experimental data whenever applicable. The data is available at our website: http://www.ctcms.nist.gov/~knc6/JVASP.html . <br>
DOI: 10.6084/m9.figshare.5776890
title: Supporting Data for Fig. 3 & S2 of "In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging"

description: This data is part of the manuscript "<i>In vitro </i>and<i> in vivo</i> phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging" by Sez-Jade Chen, Nattawut Sinsuebphon, Alena Rudkouskaya, Margarida Barroso, Xavier Intes and Xavier Michalet<br>
DOI: 10.6084/m9.figshare.5776890.v2
title: Supporting Data for Fig. 3 & S2 of "In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging"

description: This data is part of the manuscript "<i>In vitro </i>and<i> in vivo</i> phasor analysis of stoichiometry and pharmacokinetics using short lifetime near-infrared dyes and time-gated imaging" by Sez-Jade Chen, Nattawut Sinsuebphon, Alena Rudkouskaya, Margarida Barroso, Xavier Intes and Xavier Michalet<br>
DOI: 10.6084/m9.figshare.5776890.v1
title: Supporting Data for Fig. 3 & S2 of "In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using near-infrared dyes"

description: This data is part of the manuscript "In vitro and in vivo phasor analysis of stoichiometry and pharmacokinetics using near-infrared dyes" by Sez-Jade Chen, Nattawut Sinsuebphon, Alena Rudkouskaya, Margarida Barroso, Xavier Intes and Xavier Michalet<br>
DOI: 10.6084/m9.figshare.5776812
title: BIOSTS-17061-SSD-Historical

description: This zipped tar ball contains all the files (programs, data sets, program logs, shell scripts for cluster computing, etc.) that were used to produce the results in the paper referenced in the title.
DOI: 10.6084/m9.figshare.5776812.v3
title: BIOSTS-17061-SSD-Historical

description: This zipped tar ball contains all the files (programs, data sets, program logs, shell scripts for cluster computing, etc.) that were used to produce the results in the paper referenced in the title.
DOI: 10.6084/m9.figshare.5776812.v2
title: Resources for Biostatistics paper "Bayesian Clinical Trial Design Using Historical Data that Inform the Treatment Effect" by Psioda and Ibrahim.

description: This zipped tar ball contains all the files (programs, data sets, program logs, shell scripts for cluster computing, etc.) that were used to produce the results in the paper referenced in the title.
DOI: 10.6084/m9.figshare.5776704
title: Mindfulness for Difficult Asthma Data and Analysis

description: <b>Additional files for the MIDAS Study: </b>Evaluating the feasibility and acceptability of a group mindfulness intervention to improve quality of life in a poorly-controlled asthma clinic.<br>1. SPSS Datafile (encrypted - please contact research team for access).2. SPSS Analysis Syntax.3. SPSS Output generated by analysis.
DOI: 10.6084/m9.figshare.5776704.v1
title: Mindfulness for Difficult Asthma Data and Analysis

description: <b>Additional files for the MIDAS Study: </b>Evaluating the feasibility and acceptability of a group mindfulness intervention to improve quality of life in a poorly-controlled asthma clinic.<br>1. SPSS Datafile (encrypted - please contact research team for access).2. SPSS Analysis Syntax.3. SPSS Output generated by analysis.
DOI: 10.6084/m9.figshare.5776665
title: Mirabegron improves quality-of-life, treatment satisfaction, and persistence in patients with overactive bladder: a multi-center, non-interventional, real-world, 12-month study

description: <b>Objective:</b> Observational studies can provide evidence about patient outcomes in routine clinical practice. This prospective, non-interventional study (BELIEVE) is the largest real-world European study to date to assess quality-of-life, treatment satisfaction, resource utilization, and persistence in patients with overactive bladder (OAB) who were prescribed mirabegron as part of routine clinical practice. <b>Methods:</b> The primary objective was to evaluate change from baseline in quality-of-life based on overactive bladder questionnaire (OAB-q) sub-scales. Secondary objectives included evaluation of treatment persistence, patient satisfaction, healthcare resource utilization and adverse events (AEs). Follow-up was for 12 months with visit windows at 2–4 and 10–12 months. Median change from baseline in total OAB-q and its sub-scales (Health-related quality-of-life [HRQoL] and symptom bother scale) were assessed. <b>Results:</b> Overall, 862 patients were enrolled from eight European countries. In the Full Analysis Set (FAS), 73.7% were female, mean age was 61.2 years; 47.7% ≥65 years. At baseline, 41.3% had switched from other OAB treatments, 42.2% were treatment naïve, 10.1% were lapsed, and 6.4% were on combination treatment. Symptom bother and HRQoL total scores improved from baseline to 2–4 and 10–12 months. There was a notable improvement in dry rate, increasing from 34.9% at baseline to 43.7% at 10–12 months in the FAS, and a reduction in pad use. Persistence was high, with 53.8% of FAS patients remaining on mirabegron at 10–12 months. Overall, no unexpected safety issues were observed and AEs were consistent with the known safety profile of mirabegron. <b>Conclusion:</b> Patients receiving mirabegron in a real-world setting reported meaningful improvements in QoL and health status, with a persistence rate of 53.8% at 12 months for the FAS. No unexpected safety issues were observed, and AEs were consistent with the known safety profile of mirabegron.
DOI: 10.6084/m9.figshare.5776665.v2
title: Mirabegron improves quality-of-life, treatment satisfaction, and persistence in patients with overactive bladder: a multi-center, non-interventional, real-world, 12-month study

description: <b>Objective:</b> Observational studies can provide evidence about patient outcomes in routine clinical practice. This prospective, non-interventional study (BELIEVE) is the largest real-world European study to date to assess quality-of-life, treatment satisfaction, resource utilization, and persistence in patients with overactive bladder (OAB) who were prescribed mirabegron as part of routine clinical practice. <b>Methods:</b> The primary objective was to evaluate change from baseline in quality-of-life based on overactive bladder questionnaire (OAB-q) sub-scales. Secondary objectives included evaluation of treatment persistence, patient satisfaction, healthcare resource utilization and adverse events (AEs). Follow-up was for 12 months with visit windows at 2–4 and 10–12 months. Median change from baseline in total OAB-q and its sub-scales (Health-related quality-of-life [HRQoL] and symptom bother scale) were assessed. <b>Results:</b> Overall, 862 patients were enrolled from eight European countries. In the Full Analysis Set (FAS), 73.7% were female, mean age was 61.2 years; 47.7% ≥65 years. At baseline, 41.3% had switched from other OAB treatments, 42.2% were treatment naïve, 10.1% were lapsed, and 6.4% were on combination treatment. Symptom bother and HRQoL total scores improved from baseline to 2–4 and 10–12 months. There was a notable improvement in dry rate, increasing from 34.9% at baseline to 43.7% at 10–12 months in the FAS, and a reduction in pad use. Persistence was high, with 53.8% of FAS patients remaining on mirabegron at 10–12 months. Overall, no unexpected safety issues were observed and AEs were consistent with the known safety profile of mirabegron. <b>Conclusion:</b> Patients receiving mirabegron in a real-world setting reported meaningful improvements in QoL and health status, with a persistence rate of 53.8% at 12 months for the FAS. No unexpected safety issues were observed, and AEs were consistent with the known safety profile of mirabegron.
DOI: 10.6084/m9.figshare.5776665.v1
title: Mirabegron improves quality-of-life, treatment satisfaction, and persistence in patients with overactive bladder: a multi-center, non-interventional, real-world, 12-month study

description: <b>Objective:</b> Observational studies can provide evidence about patient outcomes in routine clinical practice. This prospective, non-interventional study (BELIEVE) is the largest real-world European study to date to assess quality-of-life, treatment satisfaction, resource utilization, and persistence in patients with overactive bladder (OAB) who were prescribed mirabegron as part of routine clinical practice. <b>Methods:</b> The primary objective was to evaluate change from baseline in quality-of-life based on overactive bladder questionnaire (OAB-q) sub-scales. Secondary objectives included evaluation of treatment persistence, patient satisfaction, healthcare resource utilization and adverse events (AEs). Follow-up was for 12 months with visit windows at 2–4 and 10–12 months. Median change from baseline in total OAB-q and its sub-scales (Health-related quality-of-life [HRQoL] and symptom bother scale) were assessed. <b>Results:</b> Overall, 862 patients were enrolled from eight European countries. In the Full Analysis Set (FAS), 73.7% were female, mean age was 61.2 years; 47.7% ≥65 years. At baseline, 41.3% had switched from other OAB treatments, 42.2% were treatment naïve, 10.1% were lapsed, and 6.4% were on combination treatment. Symptom bother and HRQoL total scores improved from baseline to 2–4 and 10–12 months. There was a notable improvement in dry rate, increasing from 34.9% at baseline to 43.7% at 10–12 months in the FAS, and a reduction in pad use. Persistence was high, with 53.8% of FAS patients remaining on mirabegron at 10–12 months. Overall, no unexpected safety issues were observed and AEs were consistent with the known safety profile of mirabegron. <b>Conclusion:</b> Patients receiving mirabegron in a real-world setting reported meaningful improvements in QoL and health status, with a persistence rate of 53.8% at 12 months for the FAS. No unexpected safety issues were observed, and AEs were consistent with the known safety profile of mirabegron.
DOI: 10.6084/m9.figshare.5774241.v1
title: Metadata and data for "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current"

description: Code and data necessary to reproduce analyses from "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current" by Hogle SL et al.<b><br></b><b>jupyter_notebooks</b>Jupyter notebook files needed to generate all figures and reproduce all analyses from the manuscript. In each notebook calls that generate the respective main or supplementary figure are labeled as such.
DOI: 10.6084/m9.figshare.5774241.v2
title: Metadata and data for "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current"

description: Code and data necessary to reproduce analyses from "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current" by Hogle SL et al.<b><br></b><b>jupyter_notebooks</b>Jupyter notebook files needed to generate all figures and reproduce all analyses from the manuscript. In each notebook calls that generate the respective main or supplementary figure are labeled as such.
DOI: 10.6084/m9.figshare.5774241.v3
title: Metadata and data for "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current"

description: Code and data necessary to reproduce analyses from "Pervasive influence of iron limitation in subsurface chlorophyll maximum layers of the California Current" by Hogle SL et al.<b><br></b><b>jupyter_notebooks</b>Jupyter notebook files needed to generate all figures and reproduce all analyses from the manuscript. In each notebook calls that generate the respective main or supplementary figure are labeled as such.
DOI: 10.6084/m9.figshare.5774226
title: Crime tweets per city and country

description: Number of crime-related tweets collected at city and country level in 18 countries in Latin America during a period of 70 days. Only the number of tweets is published to keep the contents of the tweets and the users confidential.
DOI: 10.6084/m9.figshare.5774214
title: Crime related words in Spanish and English

description: Extensive list of crime-related words, mostly in Spanish and some in English. In total, 392 crime-related words or items, including hashtags are considered.