cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5600086
title: Data from: Saltmarsh vegetation and secured woody debris facilitate mangrove re-colonization

description: Does the presence of saltmarsh vegetation affect the long-term regeneration of the pioneer mangrove species <em>Avicennia germinans</em> in a degraded dwarf forest? Does immobilized coarse woody debris (CWD) affect regeneration similarly? Do larger trees suppress or facilitate intraspecific saplings? The study was conducted in a dwarf mangrove forest in the high intertidal zone on Bragança peninsula in northern Brazil. The spatial patterns of <em>A. germinans</em>, the herbaceous halophyte <em>Sesuvium portulacastrum</em>, and CWD were mapped in three sample plots (each 400 m<sup>2</sup>) during two consecutive vegetation surveys, conducted in 2011 and 2014. Inhomogeneous Poisson and Thomas point-process models were used to assess the distribution of <em>A. germinans</em> life-history stages (seedlings, saplings, and adult dwarf trees), conditioned on the presence of <em>S. portulacastrum</em> and CWD. In addition, intraspecific interactions between trees and regeneration were assessed based on crown projection mapping. Bivariate point pattern analyses were used to assess the dependence of advance regeneration on dwarf <em>A. germinans</em> trees and <em>S. portulacastrum</em>. <em>A. germinans</em> saplings and trees were positively associated with <em>S. portulacastrum</em> and CWD, whereas seedlings were located around tree crowns. The density of fruit-bearing trees was positively associated with sapling density, indicating that regeneration relied on locally dispersed propagules. Herbaceous vegetation and CWD have an important ecological function in degraded mangroves by retaining tidally dispersed propagules. Here, we show that herbaceous vegetation does not suppress the growth of seedlings but facilitates mangrove recolonization. Due to limited tidal dispersal, regeneration relies on local propagule supply. In addition to hydrological restoration, the observed vegetation patterns suggest that, in the absence of propagule-retaining vegetation, restoration of high-intertidal mangroves can be facilitated by establishing nuclei of planted trees and installing secured logs.
description: File 1: Stem coordinates (cm) of A. germinans individuals of different life-history stages in three sample plots (2000 cm x 2000 cm) File 2: Cell center coordinates (cm) of S. portulacastrum patches with a size of 10 cm x 10 cm each within three sample plots File 3: Endpoint coordinates (cm) of straight coarse woody debris segments within three sample plots File 4: Canopy height raster cells of three sample plots File 5: Extent of tree crowns in eight cardinal directions (cm) around stem coordinates in three sample plots with additional height (cm) and presence of fruits (y - yes, n - no) File 6: Stem coordinates (cm), height (cm), and number of internodes of saplings measured in 2014 in three sample plots Time of data collection: January to March 2011 and January to March 2014
DOI: 10.23708/x3yehz
title: Analysis of soils collected over Dong Cao catchment in Northern Vietnam in 2015

description: The soil samples were taken in collaboration with the Soils and Fertilizers Research Institute (SFRI) at different soil depths and under different vegetation covers at the long term observatory catchment Dong Cao from the M-Tropics observatory network (https://mtropics.obs-mip.fr/) in Northern Vietnam in 2015. This dataset holds some general soil properties: total organic carbon concentration (TOC), total nitrogen concentration (TN) as well as 13C/12C and 15N/14N isotope ratios determined by EA-IRMS (dry combustion). The infrared spectrum has been measured for only some soil samples. Soil analysis were carried out at the "Pôle d’expérimentation et d’analyse des sols et sédiments tropicaux" (ALYSÉS). The collection of the data was supported by the French National Program "Réseau de Bassin Versant” (RBV).
DOI: 10.23708/i7l4ft
title: Soil macrofauna diversity and activity in Dong Cao catchment, Northern Vietnam, 2005

description: This dataset has been collected thanks to the long-term partnership with Soils and Fertilizers Research Institute (SFRI), Vietnam. The dataset holds soil macrofauna diversity and activity in Dong Cao. Sites are: (i) a fallow + Eucalyptus trees, (ii) a fallow, (iii) a cassava plantation, (iv) forests (2 sites) and (v) plantation of bracharia sp. Two soil depths are considered: 0-15 and 15-30 cm. Variables are (i) soil diversity (number of earthworms, termites, ants...), (ii) earthworm diversity (14 morphospecies), and the weight of earthworm casts in each site.
DOI: 10.5281/zenodo.5600442
title: Efficient quantum gates for individual nuclear spin qubits by indirect control

description: Hybrid quantum registers, such as electron-nuclear spin systems, have emerged as promising hard-<br> ware for implementing quantum information and computing protocols in scalable systems. Neverthe-<br> less, the coherent control of such systems still faces challenges. Particularly, the lower gyromagnetic<br> ratios of the nuclear spins cause them to respond slowly to control fields, resulting in gate times<br> that are generally longer than the coherence time of the electron. Here, we demonstrate a scheme<br> for circumventing this problem by indirect control: We apply a small number of short pulses only<br> to the electron and let the full system undergo free evolution under the hyperfine coupling between<br> the pulses. Using this scheme, we realize robust quantum gates in an electron-nuclear spin system,<br> including a Hadamard gate on the nuclear spin and a controlled-NOT gate with the nuclear spin<br> as the target qubit. The durations of these gates are shorter than the electron coherence time, and<br> thus additional operations to extend the system coherence time are not needed. Our demonstration<br> serves as a proof of concept for achieving efficient coherent control of electron-nuclear spin systems,<br> such as NV centers in diamond. Our scheme is still applicable when the nuclear spins are only<br> weakly coupled to the electron.
DOI: 10.5281/zenodo.5554281
title: Efficient quantum gates for individual nuclear spin qubits by indirect control

description: Hybrid quantum registers, such as electron-nuclear spin systems, have emerged as promising hard-<br> ware for implementing quantum information and computing protocols in scalable systems. Neverthe-<br> less, the coherent control of such systems still faces challenges. Particularly, the lower gyromagnetic<br> ratios of the nuclear spins cause them to respond slowly to control fields, resulting in gate times<br> that are generally longer than the coherence time of the electron. Here, we demonstrate a scheme<br> for circumventing this problem by indirect control: We apply a small number of short pulses only<br> to the electron and let the full system undergo free evolution under the hyperfine coupling between<br> the pulses. Using this scheme, we realize robust quantum gates in an electron-nuclear spin system,<br> including a Hadamard gate on the nuclear spin and a controlled-NOT gate with the nuclear spin<br> as the target qubit. The durations of these gates are shorter than the electron coherence time, and<br> thus additional operations to extend the system coherence time are not needed. Our demonstration<br> serves as a proof of concept for achieving efficient coherent control of electron-nuclear spin systems,<br> such as NV centers in diamond. Our scheme is still applicable when the nuclear spins are only<br> weakly coupled to the electron.
DOI: 10.17632/284ff6jnx9.1
title: BES

description: The Basic Empathy Scale in Chinese College Students: Adaptation and Psychometric Properties of a Revised Form
DOI: 10.17632/kg5yv74pk4.1
title: Data for “Urban residential energy switching in China between 1980–2014 prevents 2.2 million premature deaths” version 1.0 (One Earth)

description: This dataset includes six files containing data for our article (“Urban residential energy switching in China between 1980–2014 prevents 2.2 million premature deaths”) from 1980 to 2014 at five year intervals (four years for 2010-2014) : 1. UR (urban residential) energy consumption, 2. UR emissions of major air pollutants including PM10, PM2.5, BC, OC, CO, SO2, NH3, and NOx, 3-4. Contributions of UR energy use to ambient and indoor PM2.5 concentrations in urban China, 5. Contributions of UR energy use to exposure of urban population to PM2.5 in China, 6. Contributions of UR energy use to PM2.5-associated premature deaths in urban China.
DOI: 10.17632/b36vz2ms3d.2
title: Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS:  Juno UVS Auroral Images

description: The in this archive are the brightness and color ratio maps of the 101 spin integrated maps produced from the UVS instrument on the Juno Mission through the first 13 orbits as well as the indiviual frames of the movie S5 of the supplementary material.  There are two main directories.  The main_paper_images directory contains 7 subdirectories, one for each figure in the main text.  The supplemental_images directory contains 3 sub-directories; 1) movie, which contains the individual data for each frame of the movie, 2) north, which contains all 101 spin average images of the north pole of Jupiter, and 3) south, which contains all 101 spin average images of the south pole of Jupiter.  Each idl save file contains four arrays: 1) brightness_map (kR), 2) color_raio_map, 3) latitude_map (System III, degrees), and 4) longitude_map (System III west, degrees).  In addition, we have written out the same data in fits format with the brightness map as extension 1, the color ratio map as extension 2, the latitude maps is in extension 3 and the longitude map is in extension 4.   These data are in support JGR Planets paper "Local Time Dependence of Jupiter's Polar Auroral Emission Observed by Juno UVS" by Greathouse et al.
DOI: 10.17632/tk6rj89c5g.1
title: EFFECT TWO HOUSING SYSTEMS ON BROILER PRODUCTION AND HEAT STRESS MANAGEMENT

description: A RESEARCH PAPER ON THE EFFECT OF TWO HOUSING SYSTEMS ON BROILER PRODUCTION AND HEAT STRESS MANAGEMENT
DOI: 10.17632/c7bffdv7yb.1
title: The JRC ZERO∇CELL design documentation

description: The JRC ZERO∇CELL is a single cell testing hardware for PEM fuel cells membrane performance and durability 
examination, developed by the Joint Research Centre of the European Commission. The design documentation of 
the JRC ZERO∇CELL is available for the stakeholders under CERN-OHL-W v2 license. 

The JRC ZERO∇CELL testing hardware is designed to allow a reliable inter-comparison of test results between 
different test centres. It aims at operating conditions as far as possible uniform across the MEA active area. 
This is done by minimising the contribution of the specific hardware setup features on the experimental results. 
The condition to achieve this is a uniform distribution of all relevant physical quantities of reactant species, 
such as flow velocity, pressure, temperature and species concentration. Also, it is important that the compression 
of the MEA to be tested is well controlled during the whole performance/durability test.

The criteria met by the JRC ZERO∇CELL are the following:
 — 10 cm2 active area.
 — straight parallel gas channels representative for automotive fuel cell flow fields.
 — stoichiometric and constant gas flow regimes of humidified reactants (air and H2). 
 — co-flow as well as counter-flow of reactants. 
 — At 4.0 A.cm-2 current density steady operation:
   ● laminar flow regime (Reynolds number, Re<1,000).
   ● reactant pressure drop across active area (anode and cathode) less than 10.0 kPa.
   ● temperature variation ±1.0 degC across the active area.
   ● The average change (integrated over the surface perpendicular to the gas flow) of gas composition 
     less than 10% difference between inlet and outlet for both reactants.

Uniform inlet conditions are assumed for all gas channels regarding: 
 — pressure,
 — mass flow rate,
 — gas composition and
 — temperature.

This work was partially funded by the Fuel Cells and Hydrogen 2 Joint Undertaking (FCH2JU) receiving support 
from the European Union’s Horizon 2020 research and innovation programme. The FCH2JU may use this hardware as 
a tool to measure programme progress made on MEA performance and durability.

All modifications should be communicated to:
Tomasz.Bednarek@ec.europa.eu
Thomas.Malkow@ec.europa.eu
Darina.Blageova@ec.europa.eu

This source describes Open Hardware and is licensed under the CERN-OHL-W v2. You may redistribute and modify 
this documentation and make products using it under the terms of the CERN-OHL-W v2 (https://cern.ch/cern-ohl). 
This documentation is distributed WITHOUT ANY EXPRESS OR IMPLIED WARRANTY, INCLUDING OF 
MERCHANTABILITY, SATISFACTORY QUALITY AND FITNESS FOR A PARTICULAR PURPOSE. 
Please see the CERN-OHL-W v2 for applicable conditions (https://ohwr.org/cern_ohl_w_v2.pdf).

Copyright European Union (2017-2021).
DOI: 10.17632/rzf53yzvm3.1
title: Evaluating the effect of new gas solubility and bubble point models on PVT parameters and optimizing injected gas rate in gas-lift dual gradient drilling

description: Gas-lift dual gradient drilling (DGD) is a solution for the complex problems caused by the narrow drilling window in deepwater drilling. However, investigations are lacking on using oil-based drilling fluid in DGD, which is the principal novel idea of the present study. Herein, Nitrogen was selected as the injection gas into the riser. This research compares the results obtained from two new models with those obtained from the Standing correlations for solubility and bubble point pressure. Specifically, the study evaluates the PVT behaviors of drilling fluid (oil/water/nitrogen) in gas-lift dual gradient drilling operations in the case of using the new models or the Standing correlations by coding in MATLAB environment. Standing correlation is one of the conventional Black oil models; however, it overestimates the solubility of Nitrogen and underestimates the bubble pressure point in white mineral oil. According to the achieved results, the Standing model has some errors in evaluating the PVT behavior of Nitrogen and oil-based drilling fluids and is not recommended for the mixtures in the gas-lift dual gradient drilling. With regard to optimizing gas flow rate, it was found that the discrepancy between pressures for the new models and the Standing models is higher at both high liquid flow rates and at lower gas flow rates.
DOI: 10.17632/p4k7jcnff8.1
title: Continuous Theta-Burst Transcranial Magnetic Stimulation over the Right Dorsolateral Prefrontal Cortex Disrupts Reconsolidation of Conditioned Fear Memory in Humans

description: This study investigated whether continuous TBS (cTBS) over the dorsolateral prefrontal cortex (dlPFC) influences the reconsolidation of fear memory using a 3-day design with the fear acquisition on day 1, cTBS intervention after reactivation on day 2, and the recall test, extinction, and reinstatement test on day 3. The fear response decreased when cTBS was delivered only during the reconsolidation window. The delivery of cTBS over the right dlPFC was effective for both recent and remote fear memories. Moreover, the impact of cTBS on reconsolidation was delay-dependent. The present findings authenticate that cTBS over the right dlPFC after CS exposure effectively decreases the fear response and prevents the return of fear.
DOI: 10.17632/2c8jb3v7z6.2
title: Original uncropped gel and blot images for: Global RNA interactome of Salmonella discovers a 5’UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity  

description: Original uncropped gel and blot images for: Global RNA interactome of Salmonella discovers a 5’UTR sponge for the MicF small RNA that connects membrane permeability to transport capacity
DOI: 10.17632/bp7dzg82p6.2
title: Earthquakes triggered by fluid diffusion and boosted by fault reactivation in Weiyuan, China due to hydraulic fracturing

description: The zip file contains waveform data for a refined earthquake catalog built by Sheng et al. (2021), recorded by dense seismic array in the Weiyuan shale gas block in China. Each directory includes one earthquake.
DOI: 10.18112/openneuro.ds003844.v1.0.2
title: RESPect
DOI: 10.6075/j0qr4vmg
title: Recommended Standards and Specifications for EarthCube Projects. EarthCube Leadership Council (May 7, 2020). In EarthCube Organization Materials

description: With approval from the EarthCube Leadership Council, this living document describes minimal and optimal recommended practices for NSF EarthCube projects, proposed in 2020 and beyond, with the hope that prior funded EarthCube projects voluntarily conform too.
DOI: 10.6084/m9.figshare.14610492
title: Entheseal Changes (EC)

description: 1. EC prevalence scored with the New Coimbra Method (Henderson et al. 2016) of a Spanish population dated from the 15th to the 18th century [new data].2. Hedges'g for the effect of sex on EC for meta-analysis [data from literature review].3. WAMBS checklist. <br>4. Figure from WAMBS checklist step 5.<br>
DOI: 10.6084/m9.figshare.14610492.v1
title: Entheseal Changes (EC)

description: 1. EC prevalence scored with the New Coimbra Method (Henderson et al. 2016) of a Spanish population dated from the 15th to the 18th century [new data].2. Hedges'g for the effect of sex on EC for meta-analysis [data from literature review].3. WAMBS checklist. <br>4. Figure from WAMBS checklist step 5.<br>
DOI: 10.6084/m9.figshare.14672424
title: Emotions and Sport_Dataset

description: Reaction times to the dot-probe task before and after prolonged endurance exercise.
DOI: 10.6084/m9.figshare.14672424.v1
title: Emotions and Sport_Dataset

description: Reaction times to the dot-probe task before and after prolonged endurance exercise in under 45 and over 45 amateur runners.
DOI: 10.6084/m9.figshare.16874710
title: Moreau et al_How can the forest sector maintain its mitigation potential in a changing climate ?

description: Dataset for the article: How can the forest sector maintain its mitigation potential in a changing climate ? Case studies of boreal and northern temperate forests in eastern Canada.
DOI: 10.6084/m9.figshare.16873912
title: GerA_SuppData_2021

description: Supplemental data
DOI: 10.6084/m9.figshare.16873912.v1
title: GerA_SuppData_2021

description: Supplemental data
DOI: 10.18112/openneuro.ds003858.v1.0.0
title: Monetary Incentive Delay task
DOI: 10.3886/e142421
title: Code for Figure 3 and 4 in Incentive Constrained Risk Sharing, Segmentation, and Asset Pricing

description: This project contains R code to reproduce Figure 3 and 4 in the paper "Incentive Constrained Risk Sharing, Segmentation, and Asset Pricing."<br><br>
DOI: 10.3886/e142421v1
title: Code for Figure 3 and 4 in Incentive Constrained Risk Sharing, Segmentation, and Asset Pricing

description: This project contains R code to reproduce Figure 3 and 4 in the paper "Incentive Constrained Risk Sharing, Segmentation, and Asset Pricing."<br><br>
DOI: 10.6084/m9.figshare.16876165.v1
title: Supplementary Material – Malpighiaceae in southern Brazil: Identification keys for genera and updates on species richness

description: <b>Table S1 – </b>Generic composition of Malpighiaceae in southern Brazil, arranged into clades according to Anderson <i>et al.</i> (2006) along with relevant references about the species.<br>see Original Paper: http://dx.doi.org/10.1590/2175-7860202172121<br>
DOI: 10.6084/m9.figshare.16876165
title: Supplementary Material – Malpighiaceae in southern Brazil: Identification keys for genera and updates on species richness

description: <b>Table S1 – </b>Generic composition of Malpighiaceae in southern Brazil, arranged into clades according to Anderson <i>et al.</i> (2006) along with relevant references about the species.<br>see Original Paper: http://dx.doi.org/10.1590/2175-7860202172121<br>
DOI: 10.6084/m9.figshare.16613794
title: AcAcCoA reductases data set.rar

description: This dataset embraces different kind of data. In the folder named "molecular biology data" it is possible to find DNA and amino acid sequences corresponding to four constructed acetoacetyl-CoA reductases and the plasmids bearing the DNA sequences encoding for these enzymes. In the folder "kinetic data" it is possible to find raw data from different enzymatic assays performed with these enzymes, as well as Microsoft Excel files enabling the calculation of the product concentration in time from the raw data. Different DYNAFIT (www.biokin.com) and MATLAB scripts are provided for further analyses of these data.
DOI: 10.6084/m9.figshare.16613794.v2
title: AcAcCoA reductases data set.rar

description: This dataset embraces different kind of data. In the folder named "molecular biology data" it is possible to find DNA and amino acid sequences corresponding to four constructed acetoacetyl-CoA reductases and the plasmids bearing the DNA sequences encoding for these enzymes. In the folder "kinetic data" it is possible to find raw data from different enzymatic assays performed with these enzymes, as well as Microsoft Excel files enabling the calculation of the product concentration in time from the raw data. Different DYNAFIT (www.biokin.com) and MATLAB scripts are provided for further analyses of these data.
DOI: 10.6084/m9.figshare.16613794.v1
title: AcAcCoA reductases data set.rar

description: This dataset embraces different kind of data. In the folder named "molecular biology data" it is possible to find DNA and amino acid sequences corresponding to four constructed acetoacetyl-CoA reductases and the plasmids bearing the DNA sequences encoding for these enzymes. In the folder "kinetic data" it is possible to find raw data from different enzymatic assays performed with these enzymes, as well as Microsoft Excel files enabling the calculation of the product concentration in time from the raw data. Different DYNAFIT (www.biokin.com) and MATLAB scripts are provided for further analyses of these data.
DOI: 10.5281/zenodo.5600532
title: SSAM-lite test data

description: Spatially resolved transcriptomics datasets prepared from different publications to be used as sample data sets for the SSAM-lite tool. Each folder contains a dataset including: one file for mRNA locations, formatted as a comma separated file adhering to the DecodedSpots format defined by the Starfish pipeline (https://spacetx-starfish.readthedocs.io/en/mcai-api-additions/help_and_reference/spacetx-format/output_formats/DecodedSpots/index.html). This format is intuitive, with fields for the target mRNA, the x-coordinate and the y-coordinate. a gene signature file, containing expected mRNA expression profiles for cell types, formatted as a comma separated file with rows as cell types, columns as genes, with the matrix populated with numerical or binary values associating mRNA expression to cell types. a csv for a custom color palette for the provided cell types. and a README referencing the original publication the data was retrieved from as well as some dataset specifications. Datsets specifications: Codeluppi_osmFISH method: osmFISH tissue: mouse brain somatosensory cortex mRNA spots: 1802589 genes: 33 signatures: 31 cell types DOI: 10.1038/s41592-018-0175-z Tosti_ISS_Pancreas method: ISS tissue: human pancreas mRNA spots: 461078 genes: 138 signatures: 16 cell types DOI: 10.1053/j.gastro.2020.11.010