cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9idzgn
title: Occurrence Download

description: A dataset containing 2284861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 {
 "or" : [
 "Country is Peru",
 "Country is Ecuador"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Unknown evidence",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 2284861 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089564-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.li68nw
title: Occurrence Download

description: A dataset containing 37575 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Portulaca oleracea L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 37575 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009210-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60656/8db9a179132e4ee0
title: Custom collection of disdrometer data from Hyytiälä between 1 Jan 2016 and 9 Jun 2025
DOI: 10.17632/v3fv4cyx4j
title: Developmental of an operationalised checklist of transdiagnostic therapeutic skills in general healthcare appointments

description: Most people have no access to psychological interventions for mental or physical health conditions, particularly in lower- and middle-income countries. Teaching ultra-transdiagnostic psychological intervention skills to general healthcare staff is one way of improving access, however it is unlikely to be a feasible option unless these skills can be used in ways that do not require increased time or resources. Creating an evidence-base for this approach requires description and measurement of therapeutic skills used in general healthcare appointments. 
A two-day course to teach the skills was created by a multiprofessional committee of staff in the Malaysian mental health system, which included patients and carers. An operationalised list of skills was created following this course, which was modified after expert review. A panel of experts used the list to review videos of consultations found on the internet, with five of the experts rating at least 26 of the videos, which were included in the analysis. This was analysed using generalisability theory and inter-rater reliability was calculated for individual items. Doctors were then observed in consultations before and after the course. Rasch analysis was used to refine the scale, so that it was unidimensional and Rasch compliant. Mixed-model analysis showed that there was a pre-post increase in skills use by the doctors.
Description of files:
• Operationalised checklist of transdiagnostic therapeutic skills for use in general healthcare appointments.docx – this is a list of items in the scale
• Scale validation data multi raters longthin 25.6.23.xlsx– the data file for generalisability theory analysis
• gtheorytidiedforpubilcation.R – the R code for generalisability theory analysis
• Comparing raters tidied 10.7.24.R – the R code to calculate the ICC between raters
Observation data from the clinics is not published.
DOI: 10.17632/v3fv4cyx4j.1
title: Developmental of an operationalised checklist of transdiagnostic therapeutic skills in general healthcare appointments

description: Most people have no access to psychological interventions for mental or physical health conditions, particularly in lower- and middle-income countries. Teaching ultra-transdiagnostic psychological intervention skills to general healthcare staff is one way of improving access, however it is unlikely to be a feasible option unless these skills can be used in ways that do not require increased time or resources. Creating an evidence-base for this approach requires description and measurement of therapeutic skills used in general healthcare appointments. 
A two-day course to teach the skills was created by a multiprofessional committee of staff in the Malaysian mental health system, which included patients and carers. An operationalised list of skills was created following this course, which was modified after expert review. A panel of experts used the list to review videos of consultations found on the internet, with five of the experts rating at least 26 of the videos, which were included in the analysis. This was analysed using generalisability theory and inter-rater reliability was calculated for individual items. Doctors were then observed in consultations before and after the course. Rasch analysis was used to refine the scale, so that it was unidimensional and Rasch compliant. Mixed-model analysis showed that there was a pre-post increase in skills use by the doctors.
Description of files:
• Operationalised checklist of transdiagnostic therapeutic skills for use in general healthcare appointments.docx – this is a list of items in the scale
• Scale validation data multi raters longthin 25.6.23.xlsx– the data file for generalisability theory analysis
• gtheorytidiedforpubilcation.R – the R code for generalisability theory analysis
• Comparing raters tidied 10.7.24.R – the R code to calculate the ICC between raters
Observation data from the clinics is not published.
DOI: 10.15468/dl.j73dz3
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Buglossoides arvensis (L.) I.M.Johnst.",
 "Year 1000-2025"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030106-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q43eqy
title: Occurrence Download

description: A dataset containing 227981 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia peplus"
 ]
}

 The dataset includes 227981 records from 1406 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051705-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tbvqvg
title: Occurrence Download

description: A dataset containing 787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Artverviricota"
 ]
}

 The dataset includes 787 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051713-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17824934
title: A stem cell knockout village reveals lineage competition and a non-canonical islet cell fate in monogenic diabetes

description: This record provides the integrated Seurat RDS object and accompanying metadata for the single-cell RNA-seq dataset associated with GSE313516. The raw FASTQ files are available through ENA (ERP168459), and the processed Cell Ranger–generated feature–barcode matrices are deposited in GEO under GSE313516.

The integrated RDS object contains the post-filter, post-annotation dataset used for downstream analyses, including normalized expression values, embeddings, clustering results, and curated cell type labels. The accompanying metadata file provides per-cell annotations for all integrated samples.

These files are provided to support reproducibility and enable direct exploration of the fully processed single-cell dataset.
DOI: 10.5281/zenodo.17824935
title: A stem cell knockout village reveals lineage competition and a non-canonical islet cell fate in monogenic diabetes

description: This record provides the integrated Seurat RDS object and accompanying metadata for the single-cell RNA-seq dataset associated with GSE313516. The raw FASTQ files are available through ENA (ERP168459), and the processed Cell Ranger–generated feature–barcode matrices are deposited in GEO under GSE313516.

The integrated RDS object contains the post-filter, post-annotation dataset used for downstream analyses, including normalized expression values, embeddings, clustering results, and curated cell type labels. The accompanying metadata file provides per-cell annotations for all integrated samples.

These files are provided to support reproducibility and enable direct exploration of the fully processed single-cell dataset.
DOI: 10.34740/kaggle/dsv/14147681
title: World Athletics Calendar (worldathletics.org)
DOI: 10.22002/ytpxv-v1447
title: Supporting data and codes for "Seismic Rhythms: Earthquake Response to Tectonic, Hydrological, and Tidal Forcing in California"

description: These data and software supplement the following publication:
Sirorattanakul, K. & Avouac, J.-P. Seismic Rhythms: Earthquake Response to Tectonic, Hydrological, and Tidal Forcing in California.
Any questions can be directed to Krittanon (Pond) Sirorattanakul at krittanon.pond@gmail.com.
DOI: 10.5281/zenodo.17925858
title: Mechanistic drivers of fish monitoring discrepancies between eDNA and traditional sampling

description: Despite the increasing adoption of environmental DNA (eDNA) metabarcoding for fish monitoring, its performance relative to traditional methods remains variable. We globally synthesized 168 paired eDNA-traditional cases encompassing 3,900 species to resolve this uncertainty. Community-level eDNA effectiveness significantly outperformed netting (95% Credible Interval: 0.08–0.67) and matched other survey approaches. Detection effectiveness was highest with 12S (0.12–0.56) and COI (0.06–1.40) primers across ecosystems, whereas the exclusive use of other single primers increased the risk of false negatives. eDNA metabarcoding performed best in temperate (0.10–0.66) climatic zones, while water volume, local abiotic variables, and community species richness showed limited linear influence. Crucially, species-level detection was systematically driven by functional traits: eDNA metabarcoding preferentially detected elongated (0.11–0.29), fusiform (0.12–0.26), and larger-bodied (0.05–0.15) fishes globally. Conversely, habitat preferences were ecosystem-dependent, favoring upper- and deep-water species in marine environments (surface: 0.47–0.98; mid: 0.16–0.76; deep: 0.12–0.33) versus bottom-dwellers in freshwater (lower: 0.28–0.6; deep: 0.12–0.48). These findings quantify the mechanistic drivers of eDNA performance, providing a robust framework for its standardized, context-dependent integration into routine biodiversity assessment.
DOI: 10.5281/zenodo.17925857
title: Mechanistic drivers of fish monitoring discrepancies between eDNA and traditional sampling

description: Despite the increasing adoption of environmental DNA (eDNA) metabarcoding for fish monitoring, its performance relative to traditional methods remains variable. We globally synthesized 168 paired eDNA-traditional cases encompassing 3,900 species to resolve this uncertainty. Community-level eDNA effectiveness significantly outperformed netting (95% Credible Interval: 0.08–0.67) and matched other survey approaches. Detection effectiveness was highest with 12S (0.12–0.56) and COI (0.06–1.40) primers across ecosystems, whereas the exclusive use of other single primers increased the risk of false negatives. eDNA metabarcoding performed best in temperate (0.10–0.66) climatic zones, while water volume, local abiotic variables, and community species richness showed limited linear influence. Crucially, species-level detection was systematically driven by functional traits: eDNA metabarcoding preferentially detected elongated (0.11–0.29), fusiform (0.12–0.26), and larger-bodied (0.05–0.15) fishes globally. Conversely, habitat preferences were ecosystem-dependent, favoring upper- and deep-water species in marine environments (surface: 0.47–0.98; mid: 0.16–0.76; deep: 0.12–0.33) versus bottom-dwellers in freshwater (lower: 0.28–0.6; deep: 0.12–0.48). These findings quantify the mechanistic drivers of eDNA performance, providing a robust framework for its standardized, context-dependent integration into routine biodiversity assessment.
DOI: 10.6084/m9.figshare.30878993
title: <b>Growth-defense syndromes of a flooding-sensitive plant species in temperate freshwater marshes</b>

description: Aims Exploring covariation patterns of plant growth and defense traits along environment gradients can provide key insights into plant strategies coping with environmental variability, including fluctuation in nutrient availability. However, previous studies have primarily focused on single or pairwise trade-offs among plant defense traits, leaving a critical gap in understanding how environmental stresses influence co-variation in plant defense traits in perspective of trait integration and source pools. Methods In this study, we conducted a field survey in a freshwater marsh in northeastern China to investigate plant defense traits of the flooding-sensitive plant species Deyeuxia angustifolia, as well as soil nutrient availability, along a water level gradient. We aimed to test for multivariate defense syndromes along the gradient, and determine whether these syndromes correlate with soil nutrient availability. Results We found that D. angustifolia populations clustered into two distinct syndromes along the water level gradient. The population exhibited a high-growth strategy with enhanced mechanical defenses (e.g., cellulose, lignin) under lower water levels, but chemical defense strategy dominated tannins and phenols under higher water levels. These syndromes were jointly shaped by water depth and soil nitrogen availability. Flooding stress directly upregulated chemical defenses and structural defenses, while indirectly modulating foliar carbon: nitrogen ratios via altering soil nutrient availability. Conclusions Our results exhibit environment-dependent defense syndromes and trade-offs between plant defense traits, reflecting plant adaptative strategies to hydrological heterogeneity. Moreover, this study provides critical insights into trait coordination mechanisms in freshwater marsh ecosystems.<br>
DOI: 10.6084/m9.figshare.30878993.v1
title: <b>Growth-defense syndromes of a flooding-sensitive plant species in temperate freshwater marshes</b>

description: Aims Exploring covariation patterns of plant growth and defense traits along environment gradients can provide key insights into plant strategies coping with environmental variability, including fluctuation in nutrient availability. However, previous studies have primarily focused on single or pairwise trade-offs among plant defense traits, leaving a critical gap in understanding how environmental stresses influence co-variation in plant defense traits in perspective of trait integration and source pools. Methods In this study, we conducted a field survey in a freshwater marsh in northeastern China to investigate plant defense traits of the flooding-sensitive plant species Deyeuxia angustifolia, as well as soil nutrient availability, along a water level gradient. We aimed to test for multivariate defense syndromes along the gradient, and determine whether these syndromes correlate with soil nutrient availability. Results We found that D. angustifolia populations clustered into two distinct syndromes along the water level gradient. The population exhibited a high-growth strategy with enhanced mechanical defenses (e.g., cellulose, lignin) under lower water levels, but chemical defense strategy dominated tannins and phenols under higher water levels. These syndromes were jointly shaped by water depth and soil nitrogen availability. Flooding stress directly upregulated chemical defenses and structural defenses, while indirectly modulating foliar carbon: nitrogen ratios via altering soil nutrient availability. Conclusions Our results exhibit environment-dependent defense syndromes and trade-offs between plant defense traits, reflecting plant adaptative strategies to hydrological heterogeneity. Moreover, this study provides critical insights into trait coordination mechanisms in freshwater marsh ecosystems.<br>
DOI: 10.5281/zenodo.16763267
title: Chilcotin River Profiles using SWOT WSE nodes

description: This dataset provides water surface elevation (WSE) profiles from the SWOT satellite mission nodes product, with visualization including RMSE-based uncertainty bands and landslide location annotation.

Data contents

Excel (.xlsx) filesProcessed SWOT node used to generate longitudinal WSE profiles for key dates:



WSE_nodes_2024-05-21.xlsx



WSE_nodes_2024-07-12.xlsx




WSE_nodes_2024-08-02.xlsx




WSE_nodes_2024-08-13.xlsx




WSE_nodes_2024-09-08.xlsx



Nodes WSE vs DEM used to compute RMSE: DEM_wse_validation.xlsx

Data sources and products



SWOT WSE Node Data – Product: SWOT L2_HR_RiverSP_Node, accessed via NASA Earthdata Search

DEM – Government of British Columbia, accessed via LiDAR Download Portal


Variables



WSE (Water Surface Elevation) [m]

'p_dist_out' (distance to outlet) [m]

Elevation (DEM) [m]


Time range



SWOT acquisition dates: 2024-05-21, 2024-07-12, 2024-08-02, 2024-08-13, 2024-09-08

DEM acquisition date: 2024-05-20


Spatial coverage



Study area: Chilcotin River, British Columbia, Canada

Approximate bounding box: [51.87084,-122.82549; 51.87078,-122.72822; 51.83110,-122.72724; 51.83110,-122.82544]


Script files included:



SWOT_WSE_profiles.ipynb


This Python script visualizes and compares water surface elevation (WSE) profiles derived from the SWOT mission across multiple acquisition dates and highlights the location of a known landslide. The script includes uncertainty bands (±RMSE) for each data source, allowing for visual inspection of measurement precision. Documented in: README.md
DOI: 10.5281/zenodo.16763268
title: Chilcotin River Profiles using SWOT WSE nodes

description: This dataset provides water surface elevation (WSE) profiles from the SWOT satellite mission nodes product, with visualization including RMSE-based uncertainty bands and landslide location annotation.

Data contents

Excel (.xlsx) filesProcessed SWOT node used to generate longitudinal WSE profiles for key dates:



WSE_nodes_2024-05-21.xlsx



WSE_nodes_2024-07-12.xlsx




WSE_nodes_2024-08-02.xlsx




WSE_nodes_2024-08-13.xlsx




WSE_nodes_2024-09-08.xlsx



Nodes WSE vs DEM used to compute RMSE: DEM_wse_validation.xlsx

Data sources and products



SWOT WSE Node Data – Product: SWOT L2_HR_RiverSP_Node, accessed via NASA Earthdata Search

DEM – Government of British Columbia, accessed via LiDAR Download Portal


Variables



WSE (Water Surface Elevation) [m]

'p_dist_out' (distance to outlet) [m]

Elevation (DEM) [m]


Time range



SWOT acquisition dates: 2024-05-21, 2024-07-12, 2024-08-02, 2024-08-13, 2024-09-08

DEM acquisition date: 2024-05-20


Spatial coverage



Study area: Chilcotin River, British Columbia, Canada

Approximate bounding box: [51.87084,-122.82549; 51.87078,-122.72822; 51.83110,-122.72724; 51.83110,-122.82544]


Script files included:



SWOT_WSE_profiles.ipynb


This Python script visualizes and compares water surface elevation (WSE) profiles derived from the SWOT mission across multiple acquisition dates and highlights the location of a known landslide. The script includes uncertainty bands (±RMSE) for each data source, allowing for visual inspection of measurement precision. Documented in: README.md
DOI: 10.15468/dl.7z2sqe
title: Occurrence Download

description: A dataset containing 645960 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Oceania",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cygnus atratus"
 ]
}

 The dataset includes 645960 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051711-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wkz3gs
title: Occurrence Download

description: A dataset containing 387398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Robinia pseudoacacia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 387398 records from 2841 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051710-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qsukx
title: Occurrence Download

description: A dataset containing 75112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cephalanthera rubra (L.) Rich.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 75112 records from 485 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002213-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3uenvc
title: Occurrence Download

description: A dataset containing 18412 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.241862535476685 43.294803095683314,5.241862535476685 43.25493380778211,5.340739488601685 43.25493380778211,5.340739488601685 43.294803095683314,5.241862535476685 43.294803095683314)))"
 ]
}

 The dataset includes 18412 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0264569-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xtjuiu
title: Occurrence Download

description: A dataset containing 26728 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Museu Paraense Emílio Goeldi - Ophidia Collection"
 ]
}

 The dataset includes 26728 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041721-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nl1mbc
title: Occurrence Download

description: A dataset containing 12606 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chelon labrosus (Risso, 1827)"
 ]
}

 The dataset includes 12606 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041722-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.32euq2
title: Occurrence Download

description: A dataset containing 18486 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cytisus oromediterraneus Rivas Mart. et al.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18486 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002834-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.