cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/9y8-a06-91l
title: Monacha cartusiana (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t16-a44-lha
title: Parthenina interstincta (J. Adams, 1797)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sn7-xa4-2kn
title: Dikoleps cutleriana (W. Clark, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7bf-htf-zt5
title: Folinella excavata (R. A. Philippi, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jme-9ql-gj2
title: Chondrula microtragus (Rossmässler, 1839)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8h9-skp-n3p
title: Raphitoma cordieri (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/98q-s85-xeg
title: Cerithidium cerithinum (R. A. Philippi, 1849)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1cl-thd-jdd
title: Solecurtus strigilatus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/26v-mem-e1d
title: Sinezona cingulata (O. G. Costa, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/60q-s2y-mpl
title: Kaliella tongkingensis Möllendorff, 1901

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bjd-p3j-c1g
title: Cerithiopsis tubercularis (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zww-7rk-ttx
title: Cecilioides A. Férussac, 1814

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nm9-stw-ct0
title: Alvania lucinae Oberling, 1970

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/p2j-2fj-pap
title: Buccinum undatum Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/83t-fje-hj4
title: Chilostoma Fitzinger, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4yh-4mv-qy7
title: Pusillina munda (Monterosato, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/flb-r40-3em
title: Lajonkairia lajonkairii (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6xj-q9p-d91
title: Veronicellidae J. E. Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ana-yld-lng
title: Acanthocardia paucicostata (G. B. Sowerby II, 1834)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y1v-slx-w5s
title: Cerion uva (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/398-l2e-z36
title: Pyramidula pusilla (Vallot, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kw8-vyl-v35
title: Cepaea hortensis (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8s6-5rq-b3s
title: Brachystomia eulimoides (Hanley, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/429-nnt-hq0
title: Crassatella Lamarck, 1799

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/53a-dwk-smf
title: Jujubinus montagui (W. Wood, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ttg-v9v-4tv
title: Volvarina mitrella (Risso, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ec5-jzl-lz9
title: Vitrea subrimata (Reinhardt, 1871)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qhs-bfj-mfs
title: Bogia labronica (Bogi, 1984)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yjw-ysg-bp2
title: Epidendrium aureum Gittenberger & Gittenberger, 2005

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rst-8kc-8as
title: Epifungium ulu (Pilsbry, 1921)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vat-d1x-x5s
title: Alvania lanciae (Calcara, 1845)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wcw-slf-5jl
title: Truncatellina cylindrica (A. Férussac, 1807)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dn5-1j5-vbm
title: Cantareus apertus (Born, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n7z-k5s-m7f
title: Chauvetia mamillata (Risso, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0el-5aj-gdx
title: Monacha cartusiana (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ssp-cx5-2q7
title: Emarginula octaviana Coen, 1939

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zmz-yxp-paf
title: Scissurella costata A. d'Orbigny, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0k2-9c8-zdj
title: Ampullaceana balthica (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2gr-nce-06r
title: Clathranachis angusta (G. B. Sowerby III, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pqm-an6-d3b
title: Cirsotrema varicosum (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2yj-t3b-6ar
title: Hubendickia rolfbrandti (Temcharoen, 1971)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c80-qjq-rr3
title: Fusceulima minuta (Jeffreys, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/q01-jxr-9kc
title: Mastus cretensis (L. Pfeiffer, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/n65-ss8-m7w
title: Strombus alatus Gmelin, 1791

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xgv-at4-44x
title: Gibberula philippii (Monterosato, 1878)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/trb-qs7-vjd
title: Aporrhais pespelecani (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wev-zxe-kmk
title: Manzonia crassa (Kanmacher, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yc6-w6t-x5w
title: Diplodonta rotundata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cqj-d4q-n0p
title: Turritella turbona Monterosato, 1877

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kwy-t3k-8vt
title: Skenea catenoides (Monterosato, 1877)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/es9-nb8-qvn
title: Berthella Blainville, 1824

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t9t-xez-gg8
title: Volvulella acuminata (Bruguière, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/03w-00x-7gy
title: Gregariella ehrenbergi (Issel, 1869)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r8c-h7t-n65
title: Metaxia Monterosato, 1884

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cdt-2n0-egf
title: Oxychilus alliarius (J. S. Miller, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b3z-nj0-fpp
title: Euomphalia strigella (Draparnaud, 1801)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bp8-yyg-95h
title: Barleeia unifasciata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3m9-3wj-k5x
title: Orculella cretioreina E. Gittenberger & Hausdorf, 2004

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cpx-cb6-9as
title: Chondrulopsina intumescens (E. von Martens, 1874)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ewx-c17-bh3
title: Taranis moerchii (Malm, 1861)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ph7-hmj-2d0
title: Helicigona lapicida lapicida (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1zs-44h-shw
title: Eulimella ventricosa (Forbes, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zy1-2l7-vnw
title: Rissoa auriscalpium (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/773-7a0-znd
title: Vitreolina philippi (de Rayneval & Ponzi, 1854)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1nz-t85-l5j
title: Gibbula turbinoides (Deshayes, 1835)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qyq-140-v6z
title: Cerithiopsis tubercularis (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/aje-nw1-gd8
title: Deroceras gavdosense Wiktor, Vardinoyannis & Mylonas, 1994

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hh5-cpl-s9d
title: Dallocardia muricata (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4x0-p1p-4q1
title: Metafruticicola pellita (A. Férussac, 1832)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ngl-291-6bp
title: Abra prismatica (Montagu, 1808)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l7m-7hb-52p
title: Helix figulina Rossmässler, 1839

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sjk-mcy-yaj
title: Granularion nimbaensis Van Mol, 1970

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/14n-cm6-r39
title: Paraegopis mauritii mauritii (Westerlund, 1886)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/scq-whb-74x
title: Carinigera buresi nordsiecki E. Gittenberger & Uit de Weerd, 2004

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tpk-y8n-z89
title: Macomangulus tenuis (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/eer-sdl-3gl
title: Conus stercusmuscarum Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s4m-jcc-yzb
title: Eurystyla griffithsi (K. C. Emberton, 1999)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g3p-gd6-xwm
title: Rissoa similis Scacchi, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m02-nbb-ze0
title: Metaxia metaxa (Delle Chiaje, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/41d-sgh-pzn
title: Raphitoma contigua (Monterosato, 1884)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hs0-az3-lba
title: Oxychilus alliarius (J. S. Miller, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4k2-y6g-bcb
title: Alvania cimicoides (Forbes, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9w6-atf-y8r
title: Eatonina fulgida (J. Adams, 1797)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xdm-59f-cgt
title: Cylichna Lovén, 1846

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0rr-a10-64q
title: Alvania cimicoides (Forbes, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/r62-74e-4q1
title: Alvania carinata (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5lr-jbn-saw
title: Carychium tridentatum (Risso, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y68-q2h-e89
title: Pseudomangelia vauquelini (Payraudeau, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/081-04a-866
title: Deroceras reticulatum (O. F. Müller, 1774)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kqg-46y-qe9
title: Chilostoma Fitzinger, 1833

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xg3-2kf-6hq
title: Diodora gibberula (Lamarck, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7qj-fl4-589
title: Hiatella arctica (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v4b-pgx-hxa
title: Engina mendicaria (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/k2n-gnh-s77
title: Lepidochitona cinerea (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b8e-4ml-4ly
title: Cellana H. Adams, 1869

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jyl-m37-rez
title: Conasprella mindana (Hwass, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dxj-g49-s5s
title: Parvamussium carbaseum Dijkstra, 1991

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fe3-kmr-fqp
title: Alvania carinata (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wxf-gd6-g88
title: Cuspidaria cuspidata (Olivi, 1792)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c9t-jyh-egl
title: Galeommatidae Gray, 1840

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rvy-alq-257
title: Tectura virginea (O. F. Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vvf-d12-g72
title: Astarte sulcata (da Costa, 1778)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kcx-q2j-4h2
title: Euspira macilenta (R. A. Philippi, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v7n-j0h-ezj
title: Haminoea antillarum (A. d'Orbigny, 1841)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/47w-nkq-4sq
title: Saccostrea glomerata (A. Gould, 1850)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qe9-qk8-f3a
title: Donax trunculus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f5t-1fy-yz6
title: Laevichlamys squamosa (Gmelin, 1791)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xjw-hl3-53n
title: Macrocypraea zebra (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jt3-f5r-bxg
title: Acanthocardia spinosa ([Lightfoot], 1786)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4h-g7r-68a
title: Calliostoma zizyphinum (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hgw-rq5-83p
title: Cingulina circinata A. Adams, 1860

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hvw-9kk-z6m
title: Lepidochitona caprearum (Scacchi, 1836)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zsv-hes-9jq
title: Tectura virginea (O. F. Müller, 1776)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6px-l90-xyz
title: Natica Scopoli, 1777

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gr1-ny9-3tm
title: Thaisella coronata (Lamarck, 1816)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wkz-ycx-z9b
title: Laciolina chloroleuca (Lamarck, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0cy-dj5-yvw
title: Bornia sebetia (O. G. Costa, 1830)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6hw-rkj-2ya
title: Trisidos semitorta (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dyh-hfp-838
title: Conus magellanicus Hwass, 1792

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vm5-8mn-g5z
title: Subonoba candidissima (W. H. Webster, 1905)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dre-q4n-hxn
title: Epitonium clathrus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pf1-1lp-43b
title: Aporrhais pespelecani (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29z-6r6-9ye
title: Lucilina pacifica (Kaas & Van Belle, 1998)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/cdb-9gl-lnb
title: Assiminea grayana J. Fleming, 1828

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qak-ynk-r1p
title: Kurtiella bidentata (Montagu, 1803)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ep7-pey-f7q
title: Thais Röding, 1798

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rc0-fye-31s
title: Chaetopleura caboverdensis (Kaas & Strack, 1986)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xc-4k7-6fh
title: Litiopa melanostoma Rang, 1829

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f9a-1q3-9w6
title: Phyllonotus margaritensis (Abbott, 1958)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.5281/zenodo.16872425
title: ProtT5-derived data for the Human Proteome generated with the VESPA pipeline

description: This dataset contains various ProtT5-derived outputs for the human proteome, with all sequences truncated to a maximum length of 1024 amino acids. The data was generated using a combination of the original VESPA framework and a custom pipeline developed for a bachelor's thesis at the Technical University of Munich's Rostlab. All outputs, except for the SAV predictions, are stored as PyTorch tensors in HDF5 format, while SAV predictions are provided as multiple CSV files.

Included Folders:





fasta_sequences: Raw input sequences without truncation. UniProd identifier is not available and would need to be mapped using sequences.




embeddings: ProtT5 embeddings generated using the original VESPA framework.




logits: Raw per-residue ProtT5 logits.




reconstruction_probabilities: Per-residue reconstruction probabilities derived from the logits via softmax.




log_likelihoods: Per-residue, per-mutation log-odds ratios in the shape (L × 20). These were computed by normalizing log-probabilities by the log-probability of the wild-type residue.




conservation_scores: 9-state per-residue conservation predictions.




sav_predictions: Final VESPA mutation effect predictions for all single-residue substitutions, based on sequences with applied truncation, conservation scores, and log-likelihoods.



Generation Details:

The logits, reconstruction probabilities, and log-likelihoods were generated using a custom pipeline developed for this thesis. This pipeline utilized Dockerized runs on the LRZ cluster, processed across multiple GPUs using SLURM job arrays (see GitHub repository: https://github.com/Salzemann/fast_loglikelihoods).

The other outputs (embeddings, conservation scores, SAV predictions) were generated using the original VESPA framework (https://github.com/Rostlab/VESPA) on a local machine with an RTX 3060 12GB VRAM GPU and an AMD Ryzen 9 7950X3D 16-Core CPU.