cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/270a0-7k019
title: Pdj 122708 634

description: Prosthecobacter dejongeii, 08dec28a_Pdj_739_w2_001,
description: <strong>Tilt Series Date:</strong> 2008-12-28</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter dejongeii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-28-1/rawdata/</p>08dec28a_Pdj_739_w2_001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08dec28a_Pdj_739_w2_001_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.9hum8j
title: Occurrence Download

description: A dataset containing 1059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fritillaria imperialis",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1059 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047807-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/gnwwk-eb278
title: Hyphomonas session6 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-12-09</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-11/rawdata/</p>08dec09a_md2a_011.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-11/rawdata/08dec09a_md2a_011.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec09a_md2a_011_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 163.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e7nw6-y6294
title: Hyphomonas session6 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-12-09</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-101/rawdata/</p>08dec09a_unk1c_107.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-101/rawdata/08dec09a_unk1c_107.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec09a_unk1c_107_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 49.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-12-09-101/3dimage_5662/08dec09a_unk1c_107_1k.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.t4um4u
title: Occurrence Download

description: A dataset containing 3104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguis fragilis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 3104 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047723-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/zx6tk-xmt05
title: immature HIV-1

description: immature HIV-1, single axis o, total dose 140 e/A2
description: <strong>Tilt Series Date:</strong> 2005-10-14</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> immature HIV-1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-70.0°, 70.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: 4.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> prepared by the Sundquist lab</p>
<strong>Sample Preparation:</strong> R0.6/1 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-10-14-7/rawdata/</p>hiv_50kx_4um_14oct05n_o.mrc,  Tilt Series (Pixel Size 4.6 nm), 302.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        hiv_50kx_4um_14oct05p_o.mrc,  Tilt Series (Pixel Size 4.6 nm), 302.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/a7sn9-fnp40
title: Pdb 122308 396

description: Prosthecobacter debontii, 08dec25b_pdj_007,
description: <strong>Tilt Series Date:</strong> 2008-12-25</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-25-5/rawdata/</p>08dec25b_pdj_007.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08dec25b_pdj_007_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.s8upm8
title: Occurrence Download

description: A dataset containing 6336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "TaxonKey is Tursiops aduncus"
 ]
}

 The dataset includes 6336 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047810-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/h9z5g-sda56
title: Eco 120208 150

description: Escherichia coli, 08dec14a_ec_031,
description: <strong>Tilt Series Date:</strong> 2008-12-14</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 7.1.2 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-25/rawdata/</p>08dec14a_ec_031.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-25/rawdata/08dec14a_ec_031.mrc"
        > <i class="download icon"></i> Download </a></p>

        08dec14a_ec_031.rec,  Reconstruction (Pixel Size 1.9 nm), 484.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-12-14-25/3dimage_13320/08dec14a_ec_031.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rr7a4-zq286
title: Ostreococcus tauri

description: Ostreococcus tauri, nitrogen
description: <strong>Tilt Series Date:</strong> 2006-09-18</p>
<strong>Data Taken By:</strong> Gregory Henderson</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 165.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> prepared by Gregory Henderson and Lu Gan; cells provided by Herv� Moreau</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in f/2 medium</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ghp2006-09-18-2/rawdata/</p>06sep18c_Atlas1.mrc,  Tilt Series (Pixel Size 1.2 nm), 469.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        OT_bin2.mrc,  Reconstruction (Pixel Size 2.4 nm), 215.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yysty-ezj39
title: Hyphomonas session4 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-11-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-11-01-52/rawdata/</p>08nov01a_b17x1_052.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov01a_b17x1_052_1k.rec,  Reconstruction (Pixel Size 1.26 nm), 49.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cs4yw-qkx71
title: HUVECs infx pNLGFPBglI

description: Raw data files of HUVECs infx pNLGFPBglI
description: <strong>Tilt Series Date:</strong> 2013-08-17</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> pNLGFPBglI obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBglI. Sample frozen 24h post infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-08-17-2/rawdata/</p>13aug17_C167_1_HUVECspNLBglI224hPI_AT1BT1_0002.mrc,  Tilt Series (Pixel Size 0.5 nm), 2.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        13aug17_C167_1_HUVECspNLBglI224hPI_AT1BT1_0002_full.rec,  Reconstruction (Pixel Size 2.0 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w6wdk-ezk64
title: Pdb 110408 696

description: Prosthecobacter debontii, 08nov15a_b696_No1_002,
description: <strong>Tilt Series Date:</strong> 2008-11-15</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2008-11-15-2_slicer8037.jpg: Unknown .   .  Prosthecobacter debontii mpa2008-11-15-2_slicer8040.jpg: Unknown .  Prosthecobacter debontii mpa2008-11-15-2_slicer8041.jpg: Unknown filament .  0.6nm .  Prosthecobacter debontii
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2008-11-15-2/rawdata/</p>08nov15a_b696_No1_002.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08nov15a_b696_No1_002.rec,  Reconstruction (Pixel Size 1.9 nm), 223.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vc9fv-nws19
title: Hyphomonas session3 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2008-08-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-08-31-20/rawdata/</p>08aug31a_a1_090.mrc,  Tilt Series (Pixel Size 0.512 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08aug31a_a1_090_1k.rec,  Reconstruction (Pixel Size 1.02 nm), 87.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w4vbn-35x89
title: EIAV cores

description: EIAV cores, single axis b, total dose 120 e/A2
description: <strong>Tilt Series Date:</strong> 2005-05-19</p>
<strong>Data Taken By:</strong> Elizabeth Wright</p>
<strong>Species / Specimen:</strong> EIAV cores</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
<strong>Collaborators and Roles:</strong> N/A</p>
<strong>Purification / Growth Conditions / Treatment:</strong> prepared by the Sundquist lab</p>
<strong>Sample Preparation:</strong> R0.6/1 quantifoil, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ewr2005-05-19-5/rawdata/</p>ecore_05May19_b_neg.mrc,  Tilt Series (Pixel Size 5.6 nm), 302.1 MB  
        
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        ecore_05May19_b_pos.mrc,  Tilt Series (Pixel Size 5.6 nm), 310.5 MB  
        
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DOI: 10.22002/1g3sd-rkt11
title: Hyphomonas 1st session 22.5kx

description: high-order DNA, H-NS, nucleoid, asymmetric cell division, potential filament
description: <strong>Tilt Series Date:</strong> 2008-07-28</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2008-07-28-46/rawdata/</p>08jul28b_box17_stack15.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        08jul28b_box17_stack15_1k.rec,  Reconstruction (Pixel Size 1.9 nm), 48.3 MB  
        
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