cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7090550
title: DatasetWearables.csv

description: Methods that individually predict oxygen uptake (VO2) without the need for calibrations based on biological data obtained by wearable sensors may offer an effective approach to measure physical activity levels during realistic unsupervised activities of daily living. To evoke insights for further scientists, this dataset describes the most comprehensive second-by-second estimated VO2 data from wearables during unsupervised activities of daily living. The variables heart rate, breathing frequency, minute ventilation, and total hip acceleration were obtained from a smart shirt. The VO2 data were estimated from these variables by a previously validated algorithm. In conclusion, this repertory made available the most comprehensive dataset of predicted second-by-second oxygen uptake estimated during unsupervised activities of daily living. In addition, a few data analyses were performed to further explore this dataset. Future studies may use this same dataset to search for more complex patterns between the variables presented.
DOI: 10.6084/m9.figshare.7090409
title: Merged_PacBio.Cluster.fasta.gz

description: PacBio October 2016<br>
DOI: 10.6084/m9.figshare.7090409.v1
title: Merged_PacBio.Cluster.fasta.gz

description: PacBio October 2016<br>
DOI: 10.6084/m9.figshare.12887186.v1
title: german (1).doc

description: sese
DOI: 10.6084/m9.figshare.7089215
title: DM.theory

description: Reconstructor .theory file for Descartes's Mechanics
DOI: 10.6084/m9.figshare.12887186
title: german (1).doc

description: sese
DOI: 10.6084/m9.figshare.7089215.v1
title: DM.theory

description: Reconstructor .theory file for Descartes's Mechanics
DOI: 10.6084/m9.figshare.7089140
title: New neotropical species of Phyllachorales based on molecular, morphological, and ecological data

description: Species of tropical tar spot fungi (Phyllachorales, Ascomycota) are obligate biotrophic plant parasitic fungi associated with living leaves of a wide range of families of host plants, mainly in tropical and subtropical regions. In this study, samples of tropical tar spot fungi were collected in forests in Costa Rica and Panamá. To identify taxa, we used morphology and information on host plants and combined multigene phylogeny of four genes: the large subunit nuclear ribosomal DNA (28S rDNA), the small subunit nuclear ribosomal DNA (18S rDNA), the complete internal transcribed spacer region of ribosomal DNA (nuc rDNA ITS1-5.8S-ITS2; ITS), and the translation elongation factor 1-α (<i>tef1</i>). Here we propose one new species in the genus <i>Camarotella</i> and eight new species in <i>Telimena</i> with their morphological descriptions, illustrations, and sequence data. The newly described species are <i>Camarotella licaniae</i> on <i>Licania arborea</i> (Chrysobalanaceae) and in the genus <i>Telimena: T. billiae</i> on <i>Billia rosea</i> (Sapindaceae), <i>T. drymoniae</i> on <i>Drymonia multiflora</i> (Gesneriaceae), <i>T. hydrangeae</i> on <i>Hydrangea</i> sp. (Hydrangeaceae), <i>T. miravallensis</i> on <i>Symplocos panamensis</i> (Symplocaceae), <i>T. protii</i> on <i>Protium</i> sp. (Burseraceae), <i>T. rinoreae</i> on <i>Rinorea</i> sp. (Violaceae), <i>T. semialarii</i> on <i>Semialarium mexicanum</i> (Celastraceae), and <i>T. triseptata</i> on <i>Tapirira mexicana</i> (Anacardiaceae). The new name <i>Telimena nitens</i> on <i>Schlegelia brachyanta</i> (Schlegeliaceae) is presented and 10 species of <i>Phyllachora</i> are transferred to <i>Telimena</i>, leading to the new combinations <i>T. canarii, T. galavisii, T. insueta, T. ruelliae, T. scutiformis, T. serjaniicola, T. spicatae, T. subrepens, T. symploci</i>, and <i>T. symplocicola</i>. Additionally, revisions of tar spot fungi on host families Burseraceae, Sapindaceae, and Symplocaceae are provided, and four new synonyms are proposed.
DOI: 10.6084/m9.figshare.7089140.v1
title: New neotropical species of Phyllachorales based on molecular, morphological, and ecological data

description: Species of tropical tar spot fungi (Phyllachorales, Ascomycota) are obligate biotrophic plant parasitic fungi associated with living leaves of a wide range of families of host plants, mainly in tropical and subtropical regions. In this study, samples of tropical tar spot fungi were collected in forests in Costa Rica and Panamá. To identify taxa, we used morphology and information on host plants and combined multigene phylogeny of four genes: the large subunit nuclear ribosomal DNA (28S rDNA), the small subunit nuclear ribosomal DNA (18S rDNA), the complete internal transcribed spacer region of ribosomal DNA (nuc rDNA ITS1-5.8S-ITS2; ITS), and the translation elongation factor 1-α (<i>tef1</i>). Here we propose one new species in the genus <i>Camarotella</i> and eight new species in <i>Telimena</i> with their morphological descriptions, illustrations, and sequence data. The newly described species are <i>Camarotella licaniae</i> on <i>Licania arborea</i> (Chrysobalanaceae) and in the genus <i>Telimena: T. billiae</i> on <i>Billia rosea</i> (Sapindaceae), <i>T. drymoniae</i> on <i>Drymonia multiflora</i> (Gesneriaceae), <i>T. hydrangeae</i> on <i>Hydrangea</i> sp. (Hydrangeaceae), <i>T. miravallensis</i> on <i>Symplocos panamensis</i> (Symplocaceae), <i>T. protii</i> on <i>Protium</i> sp. (Burseraceae), <i>T. rinoreae</i> on <i>Rinorea</i> sp. (Violaceae), <i>T. semialarii</i> on <i>Semialarium mexicanum</i> (Celastraceae), and <i>T. triseptata</i> on <i>Tapirira mexicana</i> (Anacardiaceae). The new name <i>Telimena nitens</i> on <i>Schlegelia brachyanta</i> (Schlegeliaceae) is presented and 10 species of <i>Phyllachora</i> are transferred to <i>Telimena</i>, leading to the new combinations <i>T. canarii, T. galavisii, T. insueta, T. ruelliae, T. scutiformis, T. serjaniicola, T. spicatae, T. subrepens, T. symploci</i>, and <i>T. symplocicola</i>. Additionally, revisions of tar spot fungi on host families Burseraceae, Sapindaceae, and Symplocaceae are provided, and four new synonyms are proposed.
DOI: 10.6084/m9.figshare.7089131
title: Library Services for Electronic Lab Notebooks

description: University of Pittsburgh librarians at the Health Sciences Library System and the University Library System conducted an 18-question online survey to learn what roles other academic and health sciences libraries are playing at their institutions in providing services and support to their users regarding electronic lab notebooks (ELNs). <br><br>The survey was administered via Qualtrics. Questions included self-identification of being a health sciences library, whether their university offers an enterprise ELN license, if so which one and when did they start offering it, involvement in the selection process, types of services provided, service utilization, library staff involvement and workload, and whether other units at the university provide support. Questions were a mix of multiple choice and free text. Survey logic was used so depending on their answers respondents did not see all questions.<br><br>Participants were recruited from September 7, 2017 through October 6, 2017. An email message and reminder were targeted to numerous library listservs requesting participation from ONLY academic libraries, including those in the health sciences. The email also stated "The information gathered will be used in developing our service model, and we also expect to incorporate it into one or more presentations or articles for publication. Although we ask for information identifying your library/institution, it will only be used for data analysis purposes. No library/institution will be identified publicly or linked to any particular response." We therefore removed any identifying responses from the data response spreadsheet posted here. Q1 and Q9 were removed, and identifying information within Q10, Q13, and Q18 was redacted.<br>The CSV file contains de-identifed survey responses (indicated as #####). We did not include incomplete data (surveys with the majority of questions unanswered) and those responses that did not meet inclusion criteria of an academic/medical library. Also included is a PDF of the survey questions. <br><br>This data was described here: Iwema, C.L. and Ratajeski, M.A. (2018, May). Creating New Research Services: Library Support for Electronic Lab Notebooks. Paper presented at Medical Library Association Annual Conference, Atlanta, GA.<br>
DOI: 10.6084/m9.figshare.7088747
title: Excel: Reformat column layout to plate layout and vice versa (96 and 384 version)

description: These are a collection of XLSX sheets containing some of my favorite Excel tricks to reformat data to make analysis easier. <br>I often use these to reformat column formatted data into plate layout or vice versa to better visualize and understand my data. <br><br>
DOI: 10.6084/m9.figshare.7088642
title: FileS3_NCSU_Breeding.xlsx

description: Results from breeding experiments assessing the onset age of fertility in PWKB6, PWKAJ, PWKDBA2, and B6PWK hybrids.
DOI: 10.6084/m9.figshare.7088639
title: Bacterial Biobank of the Urban Environment (BBUE) metadata version 1.0

description: This table describes the associated metadata to each bacterial isolate belonging to the Bacterial Biobank of the Urban Environment (BBUE), a bacterial culture collection stored at the Institut Pasteur de Montevideo (Uruguay). Information includes species identification, whole-genome sequencing, GPS coordinates, sample source and environment.
DOI: 10.6084/m9.figshare.7088639.v2
title: Bacterial Biobank of the Urban Environment (BBUE) metadata version 1.0

description: This table describes the associated metadata to each bacterial isolate belonging to the Bacterial Biobank of the Urban Environment (BBUE), a bacterial culture collection stored at the Institut Pasteur de Montevideo (Uruguay). Information includes species identification, whole-genome sequencing, GPS coordinates, sample source and environment.
DOI: 10.6084/m9.figshare.7088642.v1
title: FileS3_NCSU_Breeding.xlsx

description: Results from breeding experiments assessing the onset age of fertility in PWKB6, PWKAJ, PWKDBA2, and B6PWK hybrids.
DOI: 10.6084/m9.figshare.7088618
title: Removal of fluoride in aqueous medium under the optimum conditions through intracellular accumulation in <i>Bacillus flexus</i> (PN4)

description: The removal of fluoride is essential for water contaminated with fluoride before being utilized since the unsafe concentration of fluoride with respect to the permissible limits. In the present study, there are 61 bacterial strains belonging to fluoride tolerance were isolated from the contaminated soil of Dharmapuri District, Tamil Nadu, India and they were evaluated for different characterization. Among the strains isolated, the strain PN4 showed a high tolerance to fluoride ranging from 500 to 2500 ppm under different stress conditions. The strain PN4 was selected as a possible organism for the degradation and removal of fluoride in an aqueous medium. Based on the morphology, biochemical characteristics and the 16S rRNA sequencing, the bacterium PN4 was identified as <i>Bacillus flexus.</i> In batch mode studies, the glucose was showed the maximum removal of fluoride (86%) followed by beef extract (82%) and a significant level of defluoridation was observed at pH 7.0 and the temperature at 35°C. In the antibiotic-resistance pattern, the strain <i>Bacillus flexus</i> PN4 was shown sensitive to three different antibiotics. Intracellular accumulation of fluoride by the bacterial cell was characterized by SEM- EDAX, TEM and FTIR analysis.
DOI: 10.6084/m9.figshare.7088639.v1
title: Bacterial Biobank of the Urban Environment (BBUE) metadata version 1.0

description: This table describes the associated metadata to each bacterial isolate belonging to the Bacterial Biobank of the Urban Environment (BBUE), a bacterial culture collection stored at the Institut Pasteur de Montevideo (Uruguay). Information includes species identification, whole-genome sequencing, GPS coordinates, sample source and environment.
DOI: 10.6084/m9.figshare.7088594
title: Dados Estatísticos de Avaliação Experimental do Robomind no Ensino de Programação com Estudantes do Curso Técnico em Informática Integrado ao Ensino Médio

description: To minimize difficulties in programming learning, new pedagogical strategies were proposed. Robomind is an example, this educational software promotes learning through play. This study aims to provide statistical evidence about the pedagogical effectivity of this tool, through an experiment with 65 students from technical high school. Statistical test did not found significant result (p-value \textless 0.05) in the learning outcomes among the group of students exposed to the intervention with Robomind and the non-intervention group. Effect size calculation resulted in r = 0.08. On the other hand, the tool proved to be adequate to avoid student evasion.
DOI: 10.6084/m9.figshare.7088618.v2
title: Removal of fluoride in aqueous medium under the optimum conditions through intracellular accumulation in <i>Bacillus flexus</i> (PN4)

description: The removal of fluoride is essential for water contaminated with fluoride before being utilized since the unsafe concentration of fluoride with respect to the permissible limits. In the present study, there are 61 bacterial strains belonging to fluoride tolerance were isolated from the contaminated soil of Dharmapuri District, Tamil Nadu, India and they were evaluated for different characterization. Among the strains isolated, the strain PN4 showed a high tolerance to fluoride ranging from 500 to 2500 ppm under different stress conditions. The strain PN4 was selected as a possible organism for the degradation and removal of fluoride in an aqueous medium. Based on the morphology, biochemical characteristics and the 16S rRNA sequencing, the bacterium PN4 was identified as <i>Bacillus flexus.</i> In batch mode studies, the glucose was showed the maximum removal of fluoride (86%) followed by beef extract (82%) and a significant level of defluoridation was observed at pH 7.0 and the temperature at 35°C. In the antibiotic-resistance pattern, the strain <i>Bacillus flexus</i> PN4 was shown sensitive to three different antibiotics. Intracellular accumulation of fluoride by the bacterial cell was characterized by SEM- EDAX, TEM and FTIR analysis.
DOI: 10.6084/m9.figshare.7088594.v1
title: Dados Estatísticos de Avaliação Experimental do Robomind no Ensino de Programação com Estudantes do Curso Técnico em Informática Integrado ao Ensino Médio

description: To minimize difficulties in programming learning, new pedagogical strategies were proposed. Robomind is an example, this educational software promotes learning through play. This study aims to provide statistical evidence about the pedagogical effectivity of this tool, through an experiment with 65 students from technical high school. Statistical test did not found significant result (p-value \textless 0.05) in the learning outcomes among the group of students exposed to the intervention with Robomind and the non-intervention group. Effect size calculation resulted in r = 0.08. On the other hand, the tool proved to be adequate to avoid student evasion.
DOI: 10.6084/m9.figshare.7088618.v1
title: Removal of fluoride in aqueous medium under the optimum conditions through intracellular accumulation in <i>Bacillus flexus</i> (PN4)

description: The removal of fluoride is essential for water contaminated with fluoride before being utilized since the unsafe concentration of fluoride with respect to the permissible limits. In the present study, there are 61 bacterial strains belonging to fluoride tolerance were isolated from the contaminated soil of Dharmapuri District, Tamil Nadu, India and they were evaluated for different characterization. Among the strains isolated, the strain PN4 showed a high tolerance to fluoride ranging from 500 to 2500 ppm under different stress conditions. The strain PN4 was selected as a possible organism for the degradation and removal of fluoride in an aqueous medium. Based on the morphology, biochemical characteristics and the 16S rRNA sequencing, the bacterium PN4 was identified as <i>Bacillus flexus.</i> In batch mode studies, the glucose was showed the maximum removal of fluoride (86%) followed by beef extract (82%) and a significant level of defluoridation was observed at pH 7.0 and the temperature at 35°C. In the antibiotic resistance pattern, the strain <i>Bacillus flexus</i> PN4 was shown sensitive to 3 different antibiotics. Intracellular accumulation of fluoride by the bacterial cell was characterized by SEM- EDAX, TEM and FTIR analysis.
DOI: 10.6084/m9.figshare.7087697
title: Human and mouse cistromes: genomic maps of putative cis-regulatory regions bound by transcription factors

description: This dataset consists of 1 <b>.xlsx</b> file and 8 <b>.zip</b> files:- <b>cistrome_overview.xlsx</b> is an Excel spreadsheet containing the computational protocol of the cistrome aggregation in the 1st tab, and overviews of the resulting cistrome maps for mouse and human in the 2nd and 3rd tabs.- <b>cistrome_hg19.zip</b>, <b>cistrome_hg38.zip</b>, <b>cistrome_mm9.zip </b>and <b>cistrome_mm10.zip</b> contain genome-wide cistome genomic maps for human (hg19 and hg38) and mouse (mm9 and mm10) genome assemblies. Each <b>.zip</b> file contains two folders: one for the base cistrome and another for the motif-annotated subset. The contents of these folders are <b>.bed</b> files.- <b>cistrome2genes_hg19.zip</b>, <b>cistrome2genes_hg38.zip</b>, <b>cistrome2genes_mm9.zip</b> and <b>cistrome2genes_mm10.zip</b> contain gene-centric maps for the respective human and mouse genome assemblies, annotated with the transcription start sites (TSS) using the GENCODE reference data. The gene lists include only the genes with cistrome regions located not farther than 10kb from TSS. These are <b>.tsv</b> files.- Inside each <b>.zip</b> file, there is a separate text (<b>.txt</b>) file with a technical description of contents and file naming conventions.<br>The related manuscript describes the objectives, sourcing and processing of the data provided here in greater detail. In short, the objective is to present general genome-wide maps of putative cis-regulatory regions bound by transcription factors for human and mouse cistromes. This is achieved through systematic analysis of ChIP-Seq data obtained from the Gene Transcription Regulation Database (http://gtrd.biouml.org) and sequence motifs from the HOmo sapiens COmprehensive MOdel COllection (HOCOMOCO: http://hocomoco.autosome.ru).
DOI: 10.6084/m9.figshare.7087586
title: Information Reduces Corruption and Improves Enrolment (But Not Schooling): A Replication Study of a Newspaper Campaign in Uganda

description: In the mid-1990s, Ugandan primary schools received only one-fifth of intended government capitation grants. A seminal study shows that a grassroots newspaper campaign substantially reduced grant capture and improved educational outcomes. We replicate these results, confirming that the campaign reduced corruption and increased enrolment. The latter outcome is only robust with an improved enrolment measure introduced in later work by the authors of the original study. We cannot, however, support the authors’ conclusion that lower capture enhanced learning. Finally, we show that the newspaper campaign allowed for a fairer allocation of teachers across schools, a result absent in the original papers.
DOI: 10.6084/m9.figshare.7087586.v1
title: Information Reduces Corruption and Improves Enrolment (But Not Schooling): A Replication Study of a Newspaper Campaign in Uganda

description: In the mid-1990s, Ugandan primary schools received only one-fifth of intended government capitation grants. A seminal study shows that a grassroots newspaper campaign substantially reduced grant capture and improved educational outcomes. We replicate these results, confirming that the campaign reduced corruption and increased enrolment. The latter outcome is only robust with an improved enrolment measure introduced in later work by the authors of the original study. We cannot, however, support the authors’ conclusion that lower capture enhanced learning. Finally, we show that the newspaper campaign allowed for a fairer allocation of teachers across schools, a result absent in the original papers.
DOI: 10.6084/m9.figshare.7087511
title: Nyiragongo 2017 - revised

description: Samples collected during a field campaign between 2016 and 2017<br>
DOI: 10.6084/m9.figshare.7087511.v1
title: Nyiragongo 2017 - revised

description: Samples collected during a field campaign between 2016 and 2017<br>
DOI: 10.6084/m9.figshare.7087475
title: forfigshare-KhashemAlmogor.ply

description: Rock art panel from Wadi Rum, Jordan. Hunting scene.<br>Panel 9 Khashem Almogor (ACOR Wadi Rum rock art database)
DOI: 10.6084/m9.figshare.7087457
title: High-throughput sequencing raw data

description: High-throughput sequencing raw data for 6 samples, A1;A2;A3 are three samples from control group,and B1;B2;B3 are three samples from treatment group.<br>
DOI: 10.6084/m9.figshare.7087457.v1
title: 动医院2017-2018学年度参评仪器设备一览表.xlsx

description: text
DOI: 10.6084/m9.figshare.7087451
title: A model of hardwood tree colonization among forest fragments: predicting migration across human-dominated landscapes

description: We developed a model of hardwood tree colonization in forest patches. We began with a basic model of species’ recruitment density calculated as a function of seed production and juvenile survivorship. Survivorship probability was expressed as a function of seed size, using seed-sowing data for a wide variety of species. To account for dispersal, we used an exponential distance-decay function based on empirical colonization data for species classified by dispersal mechanism and seed mass. The basic model reasonably predicted observed recruitment densities at or near forest edges, except for small seeded, wind-dispersed species with strong establishment constraints, for which it over-predicts. Our dispersal term yielded predictions that were not statistically different from observed colonization. However, species with large seeds and unspecialized dispersal mechanism appear to have distinct thresholds beyond which <i>no</i> dispersal occurs. Further research should better account for establishment constraints among small-seeded species, dispersal constraints among large-seeded species and unspecialized dispersers, and improve the dispersal functions to better reflect vectors such as birds. Nevertheless, the present model is adequate for the prediction of colonization probabilities in fragmented forests, requiring only an estimate of the abundance of source trees of a species and the mean inter-fragment distances.
DOI: 10.6084/m9.figshare.7087475.v3
title: forfigshare-KhashemAlmogor.ply

description: Rock art panel from Wadi Rum, Jordan. Hunting scene.<br>Panel 9 Khashem Almogor (ACOR Wadi Rum rock art database)