cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10329911
title: Lower crustal rheology controls the development of large offset strike-slip faults

description: The input files for the paper "Lower crustal rheology controls the development of large offset strike-slip faults"
DOI: 10.6084/m9.figshare.10329911.v1
title: Lower crustal rheology controls the development of large offset strike-slip faults

description: The input files for the paper "Lower crustal rheology controls the development of large offset strike-slip faults"
DOI: 10.6084/m9.figshare.10329311
title: Table S2

description: Summary of the posterior distributions of parameters estimated by genomegaMap analyses of 10,209 Mycobacterium tuberculosis genomes in D. J. Wilson and The CRyPTIC Consortium (2019) for every coding sequence in the H37Rv reference genome (version 2, genbank accession number NC_000962.2).
DOI: 10.6084/m9.figshare.10329305
title: Targets selected for verification

description: Subset of differential transcript and protein level analysis results. These transcripts/proteins were selected for further experimental validation.
DOI: 10.6084/m9.figshare.10329281
title: Differential expression analyses

description: Complete results of differential expression analyses.Intersection of transcriptomic data (FC&gt;=1.5, p&lt;=0.05).Intersection of proteomic data (FC&gt;=1.3, p&lt;=0.05).<br>
DOI: 10.6084/m9.figshare.10329305.v1
title: Targets selected for verification

description: Subset of differential transcript and protein level analysis results. These transcripts/proteins were selected for further experimental validation.
DOI: 10.6084/m9.figshare.10329275
title: Dataset for MODS analysis of trauma patients

description: This data is accessible through both GitHub and Figshare and contains the 61 patients analyzed at three different time points for MultiOrgan Dysfunction prediction. The full 89 patient dataset can be obtained din the reference below
DOI: 10.6084/m9.figshare.10329281.v2
title: Differential expression analyses

description: Complete results of differential expression analyses.Intersection of transcriptomic data (FC&gt;=1.5, p&lt;=0.05).Intersection of proteomic data (FC&gt;=1.3, p&lt;=0.05).<br>
DOI: 10.6084/m9.figshare.10329281.v1
title: Differential expression analyses

description: Complete results of differential expression analyses.
DOI: 10.6084/m9.figshare.10329275.v1
title: Dataset for MODS analysis of trauma patients

description: This data is accessible through both GitHub and Figshare and contains the 61 patients analyzed at three different time points for MultiOrgan Dysfunction prediction. The full 89 patient dataset can be obtained din the reference below
DOI: 10.6084/m9.figshare.10327715
title: Metadata record for: The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS

description: This dataset contains key characteristics about the data described in the Data Descriptor The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10327715.v2
title: Metadata record for: The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS

description: This dataset contains key characteristics about the data described in the Data Descriptor The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.10327646
title: JMB_THG_DV_EV_TD_Supplementary_Material

description: Supplementary Material for the manuscript:<br><b>Messinian vegetation and climate of the intermontane Florina-Ptolemais-Servia Basin, NW Greece inferred from palaeobotanical data: How well do plant fossils reflect past environments?</b><b> </b><b>Supplementary Material Tables S1 </b>- Climatic parameters of NLR. <b> </b><b>Table S1 (1).</b> Fossil species and climatic parameters of the corresponding NLR (depending on the fossil-species and their botanical affinities, climate parameters of species, sections, subgenera, genera, or subfamilies are used as NLR). <b>Table S1 (2).</b> Climatic parameters of NLR. <b>Supplementary Material Tables S2 </b>- Köppen-Geiger climate type signatures.<b></b> <b>Table S2 (1).</b> Scored Köppen-Geiger signatures of all NLR species of the macrofossil and pollen flora of Vegora. <b>Tables S2 (2).</b> Köppen-Geiger signature values and diagram of the macrofossil and pollen flora of Vegora. <br><b>Supplementary Material S3 - </b>Systematic palaeobotany and descriptions of palynomorphs from the plant fossil bearing strata of Vegora (sample S115992).<b></b><b> </b><b>Supplementary Material Tables S4 </b>- Palynomorph abundance of sample S115992.<b></b><b> </b><b>Supplementary Material S5 </b>- Coding of leaf physiognomic characters for morphotypes from the Vegora lignite mine macroflora. Output PDF files from online CLAMP analysis (http://clamp.ibcas.ac.cn).<b> </b>
DOI: 10.6084/m9.figshare.10327715.v1
title: Metadata record for: The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS

description: This dataset contains key characteristics about the data described in the Data Descriptor The accumulation profiles of terpene metabolites in three Muscat table grape cultivars through HS-SPME-GCMS. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.10327646.v2
title: JMB_THG_DV_EV_TD_Supplementary_Material

description: Supplementary Material for the manuscript:<br><b>Messinian vegetation and climate of the intermontane Florina-Ptolemais-Servia Basin, NW Greece inferred from palaeobotanical data: How well do plant fossils reflect past environments?</b><b> </b><b>Supplementary Material Tables S1 </b>- Climatic parameters of NLR. <b> </b><b>Table S1 (1).</b> Fossil species and climatic parameters of the corresponding NLR (depending on the fossil-species and their botanical affinities, climate parameters of species, sections, subgenera, genera, or subfamilies are used as NLR). <b>Table S1 (2).</b> Climatic parameters of NLR. <b>Supplementary Material Tables S2 </b>- Köppen-Geiger climate type signatures.<b></b> <b>Table S2 (1).</b> Scored Köppen-Geiger signatures of all NLR species of the macrofossil and pollen flora of Vegora. <b>Tables S2 (2).</b> Köppen-Geiger signature values and diagram of the macrofossil and pollen flora of Vegora. <br><b>Supplementary Material S3 - </b>Systematic palaeobotany and descriptions of palynomorphs from the plant fossil bearing strata of Vegora (sample S115992).<b></b><b> </b><b>Supplementary Material Tables S4 </b>- Palynomorph abundance of sample S115992.<b></b><b> </b><b>Supplementary Material S5 </b>- Coding of leaf physiognomic characters for morphotypes from the Vegora lignite mine macroflora. Output PDF files from online CLAMP analysis (http://clamp.ibcas.ac.cn).<b> </b>
DOI: 10.6084/m9.figshare.10327646.v1
title: JMB_THG_DV_EV_TD_Supplementary_Material

description: Supplementary Material for the manuscript:<br><b>Messinian vegetation and climate of the intermontane Florina-Ptolemais-Servia Basin, NW Greece inferred from palaeobotanical data: How well do plant fossils reflect past environments?</b><b> </b><b>Supplementary Material Tables S1 </b>- Climatic parameters of NLR. <b> </b><b>Table S1 (1).</b> Fossil species and climatic parameters of the corresponding NLR (depending on the fossil-species and their botanical affinities, climate parameters of species, sections, subgenera, genera, or subfamilies are used as NLR). <b>Table S1 (2).</b> Climatic parameters of NLR. <b>Supplementary Material Tables S2 </b>- Köppen-Geiger climate type signatures.<b></b> <b>Table S2 (1).</b> Scored Köppen-Geiger signatures of all NLR species of the macrofossil and pollen flora of Vegora. <b>Tables S2 (2).</b> Köppen-Geiger signature values and diagram of the macrofossil and pollen flora of Vegora. <br><b>Supplementary Material S3 - </b>Systematic palaeobotany and descriptions of palynomorphs from the plant fossil bearing strata of Vegora (sample S115992).<b></b><b> </b><b>Supplementary Material Tables S4 </b>- Palynomorph abundance of sample S115992.<b></b><b> </b><b>Supplementary Material S5 </b>- Coding of leaf physiognomic characters for morphotypes from the Vegora lignite mine macroflora. Output PDF files from online CLAMP analysis (http://clamp.ibcas.ac.cn).<b> </b><b>Supplementary Material S6 </b>- Köppen-Geiger climate categories
DOI: 10.6084/m9.figshare.10327565
title: Taxonomy and phylogenetics of <i>Tmesiphantes</i> Simon, 1892 (Araneae, Theraphosidae)

description: The tarantula genus <i>Tmesiphantes</i> Simon, 1892 (Theraphosinae) includes nine valid species, with records for the states of Bahia (<i>T. nubilus</i>, <i>T. caymmii</i>, <i>T. amadoi</i>, <i>T. bethaniae</i>, <i>T. hypogeus</i>, and <i>T. mirim</i>), Minas Gerais (<i>T. perp</i> and <i>T. riopretano</i>), and Pará (<i>T. aridai</i>), all in Brazil. In the present study, we reviewed the taxonomy of the <i>Tmesiphantes</i> species and performed a phylogenetic analysis using morphological characters. Four new species are described: <i>T. amazonicus</i> sp. nov., <i>T. guayarus</i> sp. nov., <i>T. nordestinus</i> sp. nov., and <i>T. raulseixasi</i> sp. nov., which expand the geographic distribution for the following states in Brazil: Goiás, Mato Grosso, Piauí, Paraíba, and Pernambuco, occurring in the Caatinga shrublands Cerrado savannas, Atlantic rain forest, and Brazilian Amazon. Phylogenetic analysis included 30 terminal taxa and 37 characters, including representatives of nine genera of Theraphosinae. The <i>Tmesiphantes</i> species formed a monophyletic group with the species hitherto included in <i>Melloleitaoina</i> and <i>Magulla</i>, with the latter being paraphyletic, which led us to propose the synonymy of these three genera. An updated diagnosis is proposed for the genus <i>Tmesiphantes</i>, which now comprises 19 species, occurring in major Brazilian biomes and in Argentina. A distribution map that includes all <i>Tmesiphantes</i> species and notes on their distributions are provided.
DOI: 10.6084/m9.figshare.10327538
title: fhaB2_0Gs

description: Bordetella pertussis fhaB allele 2 sequence, with all 10 Gs at the homopolymeric tract at 1078 bp manually removed. Used for assessing mixed read populations in B. pertussis strains
DOI: 10.6084/m9.figshare.10327565.v1
title: Taxonomy and phylogenetics of <i>Tmesiphantes</i> Simon, 1892 (Araneae, Theraphosidae)

description: The tarantula genus <i>Tmesiphantes</i> Simon, 1892 (Theraphosinae) includes nine valid species, with records for the states of Bahia (<i>T. nubilus</i>, <i>T. caymmii</i>, <i>T. amadoi</i>, <i>T. bethaniae</i>, <i>T. hypogeus</i>, and <i>T. mirim</i>), Minas Gerais (<i>T. perp</i> and <i>T. riopretano</i>), and Pará (<i>T. aridai</i>), all in Brazil. In the present study, we reviewed the taxonomy of the <i>Tmesiphantes</i> species and performed a phylogenetic analysis using morphological characters. Four new species are described: <i>T. amazonicus</i> sp. nov., <i>T. guayarus</i> sp. nov., <i>T. nordestinus</i> sp. nov., and <i>T. raulseixasi</i> sp. nov., which expand the geographic distribution for the following states in Brazil: Goiás, Mato Grosso, Piauí, Paraíba, and Pernambuco, occurring in the Caatinga shrublands Cerrado savannas, Atlantic rain forest, and Brazilian Amazon. Phylogenetic analysis included 30 terminal taxa and 37 characters, including representatives of nine genera of Theraphosinae. The <i>Tmesiphantes</i> species formed a monophyletic group with the species hitherto included in <i>Melloleitaoina</i> and <i>Magulla</i>, with the latter being paraphyletic, which led us to propose the synonymy of these three genera. An updated diagnosis is proposed for the genus <i>Tmesiphantes</i>, which now comprises 19 species, occurring in major Brazilian biomes and in Argentina. A distribution map that includes all <i>Tmesiphantes</i> species and notes on their distributions are provided.
DOI: 10.6084/m9.figshare.10327538.v1
title: fhaB2_0Gs

description: Bordetella pertussis fhaB allele 2 sequence, with all 10 Gs at the homopolymeric tract at 1078 bp manually removed. Used for assessing mixed read populations in B. pertussis strains
DOI: 10.17637/rh.10327406
title: Kew Museum of Economic Botany: regional museums data for Cornish et al (2020)

description: This dataset is a record of specimens sent from Kew's Museum of Economic Botany to selected regional museums, and a record of specimens received from these museums at Kew, between 1877 and 1938. The information includes names of recipients and senders, dates, descriptions and numbers of objects. The Kew exit data is based mainly on entries in the 'Specimens Distributed' books held in the Economic Botany Collection, supplemented (for the period before 1881) by other archival sources. The Kew entry data is based on information in the Museum Entry books. Where possible, there are item-level links to entries in the Specimens Distributed books which have been digitised for the Biodiversity Heritage Library website (https://biodiversitylibrary.org).<br><br> <br>This dataset was created as part of research for the Mobile Museum research project, a collaboration between Royal Holloway, University of London, and the Royal Botanic Gardens, Kew. Links: <br>https://www.royalholloway.ac.uk/geography/research/mobile-museum/home.aspx https://www.kew.org/science/collections/economic-botany-collection<br><br>
DOI: 10.6084/m9.figshare.10327379
title: Supplementary Material for: RHEMITT Score: Predicting the Risk of Rebleeding for Patients with Mid-Gastrointestinal Bleeding Submitted to Small Bowel Capsule Endoscopy

description: <b><i>Introduction:</i></b> Small bowel capsule endoscopy (SBCE) is the gold standard for mid-gastrointestinal bleeding (MGIB). No score has been developed to predict the risk of small bowel rebleeding after SBCE. <b><i>Objective:</i></b> Creating a predictive small bowel rebleeding risk score for MGIB, after initial SBCE. <b><i>Methods:</i></b> Retrospective, single center study, including SBCEs for MGIB, from June 2006 to October 2016. The minimum follow-up was 12 months. Univariate analysis and a multivariable Cox regression model tested the association with rebleeding. Statistically significant variables were used to compute the score. The score’s accuracy was tested through a receiver operating characteristic (ROC) curve. A classification tree identified risk groups. For internal validation, we performed a 5-fold cross validation. <b><i>Results:</i></b> We assessed 357 SBCEs for MGIB, of which 88 (24.6%) presented rebleeding during follow-up. Seven variables were used to compute a risk-predicting score – the RHEMITT score – namely, renal disease; heart failure; endoscopic capsule P1/P2 lesions; major bleeding; incomplete capsule; tobacco consumption; and endoscopic treatment. The score presented good accuracy toward the outcome (area under the curve ROC 0.842, 95% CI 0.757–0.927). We established 3 rebleeding risk groups: low (0–3 points); intermediate (4–10 points); and high (+11 points). <b><i>Conclusion:</i></b> A new MGIB score, named RHEMITT, accurately anticipates the individual risk of small bowel rebleeding after initial SBCE.
DOI: 10.17637/rh.10327355
title: Kew Museum of Economic Botany: dispersal data for Cornish & Driver (2019)

description: This dataset is a simplified record of all dispersals from the Kew Museum of Economic Botany between 1847 and 1990. It is based mainly on entries in the 'Specimens Distributed' books (or exit books) held in the Economic Botany Collection, supplemented (for the period before 1881) by other archival sources and extended with further information in Museum entry books. There are item-level links to all entries in the Specimens Distributed books which have been digitised for the Biodiversity Heritage Library website (https://biodiversitylibrary.org).<br> <br>This dataset was created as part of research for the Mobile Museum research project, a collaboration between Royal Holloway, University of London, and the Royal Botanic Gardens, Kew. Links: <br>https://www.royalholloway.ac.uk/geography/research/mobile-museum/home.aspx <br>https://www.kew.org/science/collections/economic-botany-collection <br><br>
DOI: 10.17637/rh.10327355.v1
title: Kew Museum of Economic Botany: dispersal data for Cornish & Driver (2019)

description: This dataset is a simplified record of all dispersals from the Kew Museum of Economic Botany between 1847 and 1990. It is based mainly on entries in the 'Specimens Distributed' books (or exit books) held in the Economic Botany Collection, supplemented (for the period before 1881) by other archival sources and extended with further information in Museum entry books. There are item-level links to all entries in the Specimens Distributed books which have been digitised for the Biodiversity Heritage Library website (https://biodiversitylibrary.org).<br> <br>This dataset was created as part of research for the Mobile Museum research project, a collaboration between Royal Holloway, University of London, and the Royal Botanic Gardens, Kew. Links: <br>https://www.royalholloway.ac.uk/geography/research/mobile-museum/home.aspx <br>https://www.kew.org/science/collections/economic-botany-collection <br><br>
DOI: 10.6084/m9.figshare.10327298
title: Engagement and Communication Features of Scientifically Successful Citizen Science Projects

description: The rise of citizen science in the past decade has brought many opportunities for scientists and publics alongside many challenges and questions regarding best practices. These include questions regarding public engagement, project design and measures of success. The aim of this study is to better understand what makes citizen science projects scientifically successful, and highlight what can be learned and implemented in future project design. We focus on scientifically productive projects as a success measure that can encourage greater scientists’ involvement in citizen science, and analyze five of these projects for factors that contribute to their success. We found that although all projects have strong scientific goals, they all have additional strong emphases on communication and social practices, providing a good user experience and generating motivation and empowerment. We provide five heuristics for the future design of citizen science projects, which focus on engagement and communication features which we believe are important for citizen science project success.
DOI: 10.6084/m9.figshare.10327298.v1
title: Engagement and Communication Features of Scientifically Successful Citizen Science Projects

description: The rise of citizen science in the past decade has brought many opportunities for scientists and publics alongside many challenges and questions regarding best practices. These include questions regarding public engagement, project design and measures of success. The aim of this study is to better understand what makes citizen science projects scientifically successful, and highlight what can be learned and implemented in future project design. We focus on scientifically productive projects as a success measure that can encourage greater scientists’ involvement in citizen science, and analyze five of these projects for factors that contribute to their success. We found that although all projects have strong scientific goals, they all have additional strong emphases on communication and social practices, providing a good user experience and generating motivation and empowerment. We provide five heuristics for the future design of citizen science projects, which focus on engagement and communication features which we believe are important for citizen science project success.
DOI: 10.6084/m9.figshare.10327172
title: Supplementary Material for: Fluorescence Lifetime Patterns of Retinal Pigment Epithelium Atrophy in Patients with Stargardt Disease and Age-Related Macular Degeneration

description: <b><i>Purpose:</i></b> To investigate whether autofluorescence lifetime patterns within retinal pigment epithelium (RPE) atrophy differ between age-related macular degeneration (AMD) and Stargardt disease (STGD). <b><i>Methods:</i></b> Mean retinal autofluorescence lifetimes were measured in a short and a long spectral channel (SSC: 498–560 nm; LSC: 560–720 nm). Mean retinal fluorescence lifetimes were analyzed with corresponding clinical features, fundus images, fundus autofluorescence intensity images, and optical coherence tomography. Mean fluorescence lifetime values of atrophic areas were compared between the two cohorts and within the same patient to adjacent nonatrophic regions. <b><i>Results:</i></b> Mean fluorescence lifetimes within areas with RPE atrophy of 13 patients with STGD (mean age ± SEM 43.7 ± 5 years) and 30 patients with geographic atrophy (mean age: 78 ± 2 years) were analyzed and compared to age-matched healthy participants. The mean area of RPE atrophy in STGD and AMD was 6.6 ± 2.3 mm<sup>2</sup> (range: 0.66–33.17 mm<sup>2</sup>) and 17.5 ± 3.8 mm<sup>2</sup> (range: 0.58–50.02 mm<sup>2</sup>), respectively. In patients with AMD, atrophic areas revealed significantly longer mean fluorescence lifetime values as compared with patients with STGD (SSC: 997 ± 60 vs. 363 ± 26 ps; LSC: 880 ± 46 vs. 393 ± 23 ps; <i>p</i> &lt; 0.0001). <b><i>Conclusions:</i></b> This study established that RPE atrophy in patients secondary to STGD and AMD display distinctive mean fluorescence lifetime characteristics. As retinal fluorescence lifetimes within areas of RPE atrophy were significantly longer in AMD patients, the analysis of specific lifetime patterns may provide additional insight into the disease processes and the pathogenetic mechanisms in the development of atrophic patches in AMD and STGD.