cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5624530.v1
title: A good practice guide for translating and adapting hearing-related questionnaires for different languages and cultures

description: <i>Objectives</i>: To raise awareness and propose a good practice guide for translating and adapting any hearing-related questionnaire to be used for comparisons across populations divided by language or culture, and to encourage investigators to publish detailed steps. <i>Design</i>: From a synthesis of existing guidelines, we propose important considerations for getting started, followed by six early steps: (1) Preparation, (2, 3) Translation steps, (4) Committee Review, (5) Field testing and (6) Reviewing and finalising the translation. <i>Study sample</i>: Not applicable. <i>Results</i>: Across these six steps, 22 different items are specified for creating a questionnaire that promotes equivalence to the original by accounting for any cultural differences. Published examples illustrate how these steps have been implemented and reported, with shared experiences from the authors, members of the International Collegium of Rehabilitative Audiology and TINnitus research NETwork. <i>Conclusions</i>: A checklist of the preferred reporting items is included to help researchers and clinicians make informed choices about conducting or omitting any items. We also recommend using the checklist to document these decisions in any resulting report or publication. Following this step-by-step guide would promote quality assurance in multinational trials and outcome evaluations but, to confirm functional equivalence, large-scale evaluation of psychometric properties should follow.
DOI: 10.6084/m9.figshare.12638792.v1
title: A DATASET OF DISTRIBUTION AND DIVERSITY OF MOSQUITO-ASSOCIATED VIRUSES AND THEIR RELATED MOSQUITO VECTORS IN CHINA

description: Mosquito-borne viruses such as Zika, Japanese Encephalitis and Dengue present an increasing global health concern. However, in-depth knowledge of the distribution and diversity of mosquito-associated viruses and their related vectors remains limited, especially for China. To help promote their understanding, we present the first comprehensive dataset of the distribution and diversity of these viruses and their related vectors in China (including Taiwan, Hong Kong and Macau). Data was drawn from peer-reviewed journal articles, conference papers and thesis publications in both English and Chinese. Geographical data on mosquito-associated viruses’ occurrence and related mosquito vector species was extracted, and quality-control processes employed. This dataset contains 2,433 accounts of mosquito-associated viruses’ and mosquito species geo-referenced occurrences at various administrative levels in China. The prevalent mosquito-associated virus includes Japanese encephalitis virus, Dengue virus, Banna virus and Culex flavivirus, whereas the abundant mosquito vectors are <i>Culex tritaeryohynchus</i>, <i>Aedes albopictus</i> and <i>Culex pipiens pallens</i>. This geographical dataset delivers a distribution and diversity outline of mosquito-associated viruses in China, and it can be utilized in various spatial and risk-assessment analysis.
DOI: 10.6084/m9.figshare.14627127.v1
title: Harald Ingholt Diaries

description: These are the high-resolution scans of the fieldwork diaries written by Harald Ingholt during his campaigns in Palmyra, Syria in the 1920s.
DOI: 10.6084/m9.figshare.23301683.v2
title: Raw mass spectrometry data for Manuscript (Data S1)

description: The proteins, co-immunoprecipitated with FLAG-tagged g-tubulin from <em>C. elegans</em> embryonic extracts, were comprehensively analyzed by mass spectrometry. This data is cited in "Germline-specific role for unconventional components of the g-tubulin complex in <em>Caenorhabditis elegant. </em> <br> <br>
DOI: 10.6084/m9.figshare.4814914.v1
title: Supplementary Material for: Circulating Exosomal MicroRNA-21 as a Biomarker in Each Tumor Stage of Colorectal Cancer

description: <b><i>Objective:</i></b> We clarified the predictive and prognostic value of circulating plasma exosomal microRNA-21 (miR-21) in each TNM stage of colorectal cancer (CRC) patients. <b><i>Methods:</i></b> The microRNA (miRNA) profiles of the plasma exosomes, primary tumor tissues, and liver metastasis tissues from the same CRC patients were examined using a microarray. For validation analysis, the plasma exosome samples from 326 CRC patients were measured by TaqMan miRNA assays. <b><i>Results:</i></b> In the miRNA microarray analyses, miR-21 showed the highest upregulation in exosomes, primary tumor tissues, and liver metastasis tissues. Significant correlations were demonstrated between exosomal miR-21 and tissue miR-21 levels. As for the relationship to the pathological condition, exosomal miR-21 showed a significant association with liver metastasis and TNM stage. The overall survival (OS) rates and disease-free survival (DFS) rates in high-exosomal-miR-21 patients were significantly worse than those in low-miR-21 patients. Exosomal miR-21 levels were an independent prognostic factor for OS and DFS in CRC patients with TNM stage II or III, and for OS in patients with TNM stage IV. <b><i>Conclusion:</i></b> Plasma exosomal miR-21 levels are a useful biomarker for the prediction of recurrence and poor prognosis in CRC patients with TNM stage II, III, or IV.
DOI: 10.6084/m9.figshare.22656223.v1
title: Landslide topology uncovers failure movements

description: The data contains the curated landslide shapefiles of Italy, the US Pacific Northwest, Denmark and Wenchuan, China.
DOI: 10.6084/m9.figshare.24251276.v1
title: Changes in comorbid depression following intensive trauma-focused treatment for PTSD and complex PTSD

description: The extent to which intensive trauma-focused treatment for individuals with post-traumatic stress disorder (PTSD) is also effective in treating comorbid major depressive disorder (MDD) remains unclear. The purpose of the present study was to test the hypothesis that brief intensive trauma-focused therapy for PTSD is associated with significant reductions in depressive symptoms and loss of diagnostic status of MDD. A total of 334 adult patients with PTSD (189 patients who were also diagnosed with MDD) underwent a brief intensive trauma-focused treatment programme consisting of EMDR therapy, prolonged exposure, physical activity, and psychoeducation. At pre-treatment, post-treatment and 6-month follow-up, severity and diagnostic status of PTSD and MDD were assessed. A linear mixed model was used to analyze changes in the severity of PTSD and depressive symptoms, whereas a generalized linear mixed model was used to determine changes in the MDD diagnostic status. Treatment resulted in a significant and strong decrease of PTSD and MDD symptoms at post-treatment (<i>d</i> = 2.34 and 1.22, respectively), and at 6-month follow-up (<i>d</i> = 1.67 and 0.73, respectively). The proportion of patients fulfilling the diagnostic status of MDD changed from 57% at pre-treatment to 33% at the 6-month follow-up. Although the initial response to treatment did not differ between patients with and without comorbid MDD, for both groups a significant relapse in depressive symptoms was found after six months, which could be explained almost entirely by the presence of CPTSD at baseline. The results support the notion that brief, intensive trauma-focused treatment is highly effective for individuals with PTSD and comorbid MDD. Because patients with CPTSD are vulnerable to relapse in depressive symptoms, this target group may require additional treatment. Intensive trauma-focused treatment (ITFT) of PTSD proved to be associated with a significant decrease in comorbid MDD.Comorbid MDD did not moderate the effect of ITFT for PTSD.Presence of Complex PTSD was predictive of relapse of MDD symptoms 6 months later. Intensive trauma-focused treatment (ITFT) of PTSD proved to be associated with a significant decrease in comorbid MDD. Comorbid MDD did not moderate the effect of ITFT for PTSD. Presence of Complex PTSD was predictive of relapse of MDD symptoms 6 months later.
DOI: 10.6084/m9.figshare.24994253.v1
title: HR_Soybean

description: High-resolution soybean images, can be used for super-resolution or any other applications.
DOI: 10.6084/m9.figshare.26868511.v2
title: The Global Talent Transfer Characteristic Dataset from 2000-2024 Network Portrait Text

description: We employed a standard mapping framework to depict the global talent mobility trajectories, using national boundaries as the spatial measurement units. The scope of countries is based on the 193 member states included in the United Nations Blue Book (UN Blue Book). Additionally, we reorganized the data along a temporal axis, enabling researchers to analyze monthly or yearly mobility changes.
DOI: 10.6084/m9.figshare.27216426.v3
title: Mare Basalt Thickness in the Chang’E-6 Landing Region: Insights into Late-stage Volcanism in the Lunar Farside South Pole–Aitken Basin Relevant to 76 Identified Craters and their M<sup>3</sup> Spectral Data

description: Data for the manuscript submitted to GRL (i.e., Mare Basalt Thickness in the Chang’E-6 Landing Region: Insights into Late-stage Volcanism in the Lunar Farside South Pole–Aitken Basin)
DOI: 10.6084/m9.figshare.24923706.v1
title: spot instance dataset

description: Spot instance dataset for 3 months<br>
DOI: 10.6084/m9.figshare.13524434.v1
title: FS66_genome.fasta

description: genome assembly of FS66 including mitochondrial genome in FASTA format
DOI: 10.6084/m9.figshare.16759675.v1
title: Supplementary Material for: Activation of NLRP3 Inflammasome Complexes by Beta-Tricalcium Phosphate Particles and Stimulation of Immune Cell Migration in vivo

description: Beta-tricalcium phosphate (β-TCP) serves as a bone substitute in clinical practice because it is resorbable, biocompatible, osteointegrative, and osteoconductive. Particles of β-TCP are also inflammatory mediators although the mechanism of this function has not been fully elucidated. Regardless, the ability of β-TCP to stimulate the immune system might be useful for immunomodulation. The present study aimed to determine the effects of β-TCP particles on NLR family pyrin domain containing 3 (NLRP3) inflammasome complexes. We found that β-TCP activates NLRP3 inflammasomes, and increases interleukin (IL)-1β production in primary cultured mouse dendritic cells (DCs) and macrophages, and human THP-1 cells in caspase-1 dependent manner. In THP-1 cells, β-TCP increased also IL-18 production, and NLRP3 inflammasome activation by β-TCP depended on phagocytosis, potassium efflux, and reactive oxygen species (ROS) generation. We also investigated the effects of β-TCP in wild-type and NLRP3-deficient mice in vivo. Immune cell migration around subcutaneously injected β-TCP particles was reduced in NLRP3-deficient mice. These findings suggest that the effects of β-TCP particles in vivo are at least partly mediated by NLRP3 inflammasome complexes.
DOI: 10.6084/m9.figshare.17032106.v1
title: Ecoregion biodiversity indicator values 2005 - 2008

description: <br>Biodiversity Intactness Index 2005 input data:<br>Sanchez-Ortiz, Katia; Newbold, Tim; Purvis, Andy; De Palma, Adriana (2019): Global maps of Biodiversity Intactness Index (Sanchez-Ortiz et al., 2019 - bioRxiv ). figshare. Dataset. https://doi.org/10.6084/m9.figshare.7951415.v1 <br>https://figshare.com/articles/dataset/Global_maps_of_Biodiversity_Intactness_Index_Sanchez-Ortiz_et_al_2019_-_bioRxiv_/7951415<br><br>Human Footprint Index 2005 input data:<br>Williams, Brooke et al. (2020), Change in terrestrial human footprint drives continued loss of intact ecosystems , Dryad, Dataset, https://doi.org/10.5061/dryad.3tx95x6d9<br>Living Planet Index 2005 input data:<br> LPI 2020. Living Planet Index database. 2020. &lt; www.livingplanetindex.org/&gt;. Downloaded on 21 July 2020.
DOI: 10.6084/m9.figshare.19763533.v1
title: Makassar_Data

description: Makassar Strait data
DOI: 10.6084/m9.figshare.11317475.v1
title: Supplementary Material for: Management of Gastroesophageal Reflux Disease in Asian Countries: Results of a Questionnaire Survey

description: <b><i>Introduction:</i></b> The Asia-Pacific consensus on the management of gastroesophageal reflux disease (GERD) and the GERD treatment guidelines of 2015 drawn up by the Japanese Society of Gastroenterology were proposed, and GERD management in Asian regions was assumed to be performed based on these consensuses. In this environment, the current status of GERD management in clinical practice among Asian regions is less well-known. <b><i>Objective:</i></b> This questionnaire-based consensus survey was performed to clarify the current status of management of GERD in clinical practice in Asian regions. <b><i>Methods:</i></b> A questionnaire related to management of GERD was distributed to members of the International Gastroenterology Consensus Symposium Study Group. We analyzed the questionnaire responses and compared the results among groups. <b><i>Results:</i></b> The frequencies of erosive GERD (ERD), non-ERD, uninvestigated GERD, and Barrett’s esophagus varied significantly among Asian countries. The most important factor in diagnosing GERD was the presence of symptoms in all countries. A proton pump inhibitor was the most commonly prescribed drug to treat GERD in all countries. Endoscopic surveillance for GERD was performed regularly. <b><i>Conclusion:</i></b> This questionnaire survey revealed the current status of management of GERD in clinical practice in various Asian countries.
DOI: 10.6084/m9.figshare.12051915.v5
title: Single-cell transcriptional profiling reveals cellular and molecular diversity in human umbilical cord tissue and corresponding mesenchymal stem/stromal cell

description: Mesenchymal stem/stromal cells (MSCs) demonstrate great therapeutic potential in regenerative medicine. However, the differences between the transcriptome of MSCs from umbilical cord tissue and in vitro cell culture at single-cell level remain elusive. We obtained a large-scale single-cell transcriptome of total 21,172 single cells from human umbilical cord Wharton's jelly tissue and the matched culture-expanded MSCs from three donors to reveal cellular and molecular diversity in human umbilical cord tissue and corresponding mesenchymal stem/stromal cell.
DOI: 10.6084/m9.figshare.28829444.v1
title: Semantic segmentation of the BNCFRPs(Cityscapes standard dataset)

description: This dataset is a custom dataset made in accordance with the cityscapes standard for training XCT images of biaxial non-crimp Fabric-reinforced polymer composites with different degrees of damage
DOI: 10.6084/m9.figshare.9943670.v1
title: Waiting for CARLA base en.xlsx

description: Database of a survey of HIV outpatients’ clinics physicians' preparedness and disposition towards the CARLA (cabotegravir and rilpivirine long-acting) treatment strategy
DOI: 10.6084/m9.figshare.23623695.v5
title: Supporting Information for "Coupling between exhumation and subduction: a case study from the southern Great Xing’an Range, NE Asia" on Geophysical Research Letters

description: Supporting Information (tables ans figures) for "Coupling between continental exhumation and subduction: a case study from the southern Great Xing’an Range, NE Asia" on Geophysical Research Letters
DOI: 10.6084/m9.figshare.26390974.v1
title: Supplementary dataset for Quinones in Pseudomonadota, Dataset S1, HMM profiles for quinone biosynthesis annotation

description: File descriptionThis archive contains the 95 protein profiles used to annotate proteins from the quinone biosynthesis pathways:Ubiquinone (UQ) O2-dependent pathwayUQ O2-independent pathwayRquA protein for the rhodoquinone pathwayMenaquinone (MK) Men pathwayMK futalosine pathwayPlastoquinone pathwaySome profiles are to be used with GA (gathering) scores when using HMMER ('cut-ga' option):MenA: 100MenB: 350MenH: 110MenE: 300RquA: 100RquA2: 100Note that some proteins have several corresponding profiles, and the <code>"Allo_*"</code> and <code>"*decoy*"</code> profiles are used as baits for homologous proteins with different functions.ReferencesThis is part of the Supplementary material of the study "A dynamic quinone repertoire accompanied the diversification of energy metabolism in Pseudomonadota", submitted to <i>The </i><i>ISME Journal</i>.Authors' list: Sophie-Carole Chobert, Morgane Roger-Margueritat, Laura Flandrin, Safa Berraies, Christopher T. Lefèvre, Ludovic Pelosi, Ivan Junier, Nelle Varoquaux, Fabien Pierrel, Sophie S. AbbySeveral of the above included profiles were published in previous studies, while most were designed for the above-listed article."Diversification of ubiquinone biosynthesis via gene duplications, transfers, losses, and parallel evolution", <i>Molecular Biology and Evolution</i>, 2023."Ubiquinone Biosynthesis over the Entire O2 Range: Characterization of a Conserved O2-Independent Pathway", <i>mBio</i>, 2019<br>
DOI: 10.25405/data.ncl.16953979.v1
title: UV-vis Measurements - CO2 and Water Splitting Systems

description: UV-vis absorption measurements on thin films raw data to accompany the manuscript "Ruthenium Assemblies for CO2Reduction and H2 Generation: TimeResolved Infrared Spectroscopy,Spectroelectrochemistry and aPhotocatalysis Study in Solution and onNiO"
DOI: 10.6084/m9.figshare.21901821.v3
title: Final harmonized functional connectivity matrices for both ASD (N=657) and healthy subjects (N=884). From "The neurogenetics of functional connectivity alterations in Autism: Insights from subtyping in 657 patients"

description: This dataset includes the following preprocessed data used in the study "The neurogenetics of functional connectivity alterations in Autism: Insights from subtyping in 657 patients"" (Accepted in <em>Biological Psychiatry</em>): <br> <strong>- "demo_data.xlsx": </strong>It contains the cohort and institution IDs, subject IDs, group ids (TDC/ASD), age, and sex. <br> <strong>- "harmonized_connectivity_2D.tsv": </strong>Connectivity entries in 2D format, such that columns correspond to a particular connectivity entry out of the all the 3321 (from Desikan atlas) and each row corresponds to a particular subject.
DOI: 10.6084/m9.figshare.22555483.v1
title: datasetN400amplitudes_GF:role.xlsx

description: Unrelated and related prime word N400 amplitudes at long and short stimulus onset asynchronies for 32 electrode sites for 47 participants at clinical high risk. The data also includes global functioning role scores at baseline, year one and year two.
DOI: 10.6084/m9.figshare.24550948.v3
title: Data for <b><i>Calcium isotopic compositions of eclogite melts and negligible modification during reaction with lithospheric mantle</i></b>

description: This dataset includes (1) Chemical and isotopic compositions of the potassic basalts from northeast China in this study (Table S1) and standards (Tables S2-3); (2) Melting of MORB-like eclogite and peridotite with evolving modal composition in melting residue (Tables S4-5); and (3) Modelling the reaction between initial melts and lithospheric mantle (Table S6).
DOI: 10.6084/m9.figshare.20220084.v1
title: SciSciNet_Link_Twitter

description: SciSciNet_Link_Twitter
DOI: 10.6084/m9.figshare.28212953
title: Chemical staining for fundamental studies and optimization of binders in Li-ion battery negative electrodes

description: Experimental data supporting the paper on chemical staining and mapping aqueous binders in graphite-based Li-ion battery electrodes, showing EsB, EDX, SEM images of binders in the electrodes, Monte Carlo simulations of backscattering events in silverized CMC films, EIS protocols and 4-point probe measurements of electrodes with different binder distribution, XPS and ATR-IR spectra of graphite electrode components subjected to chemical staining.
DOI: 10.6084/m9.figshare.28212953.v1
title: Chemical staining for fundamental studies and optimization of binders in Li-ion battery negative electrodes

description: Experimental data supporting the paper on chemical staining and mapping aqueous binders in graphite-based Li-ion battery electrodes, showing EsB, EDX, SEM images of binders in the electrodes, Monte Carlo simulations of backscattering events in silverized CMC films, EIS protocols and 4-point probe measurements of electrodes with different binder distribution, XPS and ATR-IR spectra of graphite electrode components subjected to chemical staining.
DOI: 10.5281/zenodo.17235885
title: Structured aggression and dominance dynamics in a long-lived colonial bird:  effects of sex, age, and rearing history in African penguins

description: 1. Data files





agonistic_events.csvContains all recorded aggressive interactions between African penguins during 97 observation days.





date: observation date (YYYY-MM-DD)




initiator: ID of the aggressor




receiver: ID of the recipient




interaction_type: categorical (e.g. point threat, chase, peck)




edge_weight: ordinal aggression intensity (1 = display, 2 = chase, 3 = fight/peck)






attributes.csvIndividual-level attributes of all penguins in the study colony.





ID: individual name or band code




sex: male (m) / female (f)




age: integer, years at start of observation




age_category: juvenile / adult




rearing: rearing history (parent / hand / mix)





2. R scripts





kovács et al 2025.rMain R script used for data processing and analyses.Includes:





data cleaning and preparation




construction of daily aggressive networks




calculation of David’s Score (DS) using the ANTs package




fitting permuted GLMs and PGLMMs for sex, age, and rearing effects




generation of Figures 1–3
DOI: 10.25345/c51834g14
title: MassIVE MSV000099456 - CSN5A and DEG1 Mediated Posttranslational Control of Flowering Locus T Protein Degradation in Response to Ambient Temperature
title: Proteins were analyzed by liquid chromatography-tandem mass spectrometry (LC-MS/MS) to identify potential interactors. Peptides were separated using an Ultimate 3000 UPLC system (Dionex) coupled to a Q Exactive Plus mass spectrometer (Thermo Scientific) equipped with a nanoelectrospray ion source. Chromatographic separation was performed on a 15 cm x 75 um i.d. Acclaim PepMap RSLC C18 reversed-phase column (Thermo Scientific) with a flow rate of 300 nL/min. Peptides were eluted using a 0-65% acetonitrile gradient in 0.1% formic acid over 180 min.Mass spectrometry data were acquired in data-dependent acquisition mode, selecting the top 10 most intense ions for MS/MS fragmentation. MS/MS spectra were searched against the Arabidopsis thaliana UniProt database using MASCOT v2.4 (Matrix Science). Search parameters included carbamidomethylation of cysteines as a fixed modification, oxidation of methionines as a variable modification, and a maximum of two missed trypsin cleavages. Mass tolerance was set to 10 ppm for both precursor and fragment ions.
DOI: 10.15468/dl.dwvpx2
title: Occurrence Download

description: A dataset containing 103069 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Monitoring Sites 1000 Satoyama Birds"
 ]
}

 The dataset includes 103069 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286022-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ek7weg
title: Occurrence Download

description: A dataset containing 897 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oncosiphon suffruticosus (L.) Källersjö"
 ]
}

 The dataset includes 897 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052320-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.