cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5063/jq0zdm
title: Integrating aquatic metabolism and net ecosystem CO2 balance in short- and long-hydroperiod subtropical freshwater wetlands

description: How aquatic primary productivity influences the carbon (C) sequestering capacity of wetlands is uncertain. We evaluated the magnitude and variability in aquatic C dynamics and compared them to net ecosystem CO2 exchange (NEE) and ecosystem respiration (Reco) rates within calcareous freshwater wetlands in Everglades National Park that vary in hydroperiod (defined as the number of days of inundation in a year). We continuously recorded 30-minute measurements of dissolved oxygen (DO), water level, water temperature (Twater), and photosynthetically active radiation (PAR). These measurements were coupled with ecosystem CO2 fluxes over 5 years (2012-2016) in a long-hydroperiod peat-rich, freshwater marsh and a short-hydroperiod, freshwater marl prairie. Daily net aquatic primary productivity (NAPP) rates indicated both wetlands were generally net heterotrophic. Gross aquatic primary productivity (GAPP) ranged from 0 to -6.3 g C m-2 day-1 and aquatic respiration (RAq) from 0 to 6.13 g C m-2 day-1. Nonlinear interactions between water level, Twater, and GAPP and RAq resulted in high variability in NAPP that contributed to NEE in Everglades freshwater marsh and marl prairie wetlands. Net aquatic primary productivity accounted for 4-5% of the deviance explained in NEE rates. With respect to the flux magnitude, daily NAPP was a greater proportion of daily NEE at the long-hydroperiod site (95%) compared to the short-hydroperiod site (64%). Although we have confirmed the significant contribution of NAPP to NEE in both long- and short-hydroperiod freshwater wetlands, the decoupling of the aquatic and ecosystem fluxes could largely depend on emergent vegetation, the carbonate cycle, and the lateral C flux.
DOI: 10.5281/zenodo.4748053
title: The Midlatitude Positive Bay index

description: The Midlatitude Positive Bay (MPB) index measures the strength of the substorm current wedge.
DOI: 10.6084/m9.figshare.14579349
title: Leaf morphological database of Quercus aquifolioides

description: <b>Leaf </b><b>morphological data</b><b> for all samples in TXT format (before genetic classification)</b>Leaf morphological data for all samples of Quercus aquifolioides across in Southwest China, produced Image J program by in TXT format. (1,435 leaves in total)LEAF_All_1435.txt Leaf morphological data for 1,365 leaves divided by STRUCTURE results, produced Image J program by in TXT format.Leaf morphological data for 1,365 leaves divided by STRUCTURE results of Quercus aquifolioides across in Southwest China, produced Image J program by in TXT format. (as input data of Principal Component Analyses (PCAs), two-block partial least-squares (2B-PLS) analysis, canonical variate analysis (CVA) and discriminant analysis (DA) in Morpho J software)LEAF_cluster_1365.txt<b> </b>Leaf morphological data for a subsample of 290 leaves repeatedly marked, produced by Image J in TXT format.Leaf morphological data for a subsample of 290 leaves repeatedly marked of Quercus aquifolioides across in Soutnwest China, produced by Image J in TXT format. (as input data of Procrustes ANOVA in Morpho J software) LEAF_repeat_290.txt<br>
DOI: 10.6084/m9.figshare.14579427
title: Supplementary Material for: Exploring Markers of Exhausted CD8 T Cells to Predict Response to Immune Checkpoint Inhibitor Therapy for Hepatocellular Carcinoma

description: <b><i>Background:</i></b> Reversal of CD8 T-cell exhaustion was considered a major antitumor mechanism of anti-programmed cell death-1 (PD-1)/ anti-programmed death ligand-1 (PD-L1)-based immune checkpoint inhibitor (ICI) therapy. <b><i>Objectives:</i></b> The aim of this study was to identify markers of T-cell exhaustion that is best associated with ICI treatment efficacy for advanced hepatocellular carcinoma (HCC). <b><i>Methods:</i></b> Immune cell composition of archival tumor samples was analyzed by transcriptomic analysis and multiplex immunofluorescence staining. <b><i>Results:</i></b> HCC patients with objective response after anti-PD-1/anti-PD-L1-based ICI therapy (<i>n</i> = 42) had higher expression of genes related to T-cell exhaustion. A 9-gene signature (LAG3, CD244, CCL5, CXCL9, CXCL13, MSR1, CSF3R, CYBB, and KLRK1) was defined, whose expression was higher in patients with response to ICI therapy, correlated with density of CD8<sup>+</sup>LAG3<sup>+</sup> cells in tumor microenvironment, and independently predicted better progression-free and overall survival. This 9-gene signature had similar predictive values for patients who received single-agent or combination ICI therapy and was not associated with prognosis in HCC patients who received surgery, suggesting that it may outperform other T-cell signatures for predicting efficacy of ICI therapy for HCC. For HCC patients who underwent surgery for both the primary liver and metastatic lung tumors (<i>n</i> = 31), lung metastatic HCC was associated with a higher exhausted CD8 T-cell signature, consistent with prior observation that patients with lung metastatic HCC may have higher probability of response to ICI therapy. <b><i>Conclusions:</i></b> CD8 T-cell exhaustion in tumor microenvironment may predict better efficacy of ICI therapy for HCC.
DOI: 10.7284/141446
title: Flowmeter data collected during research cruise AR43 using a Thiel Thiel Flowmeter instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141445
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR43 using a Kongsberg DPS112 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141444
title: INS (Inertial Navigation System) data collected during research cruise AR43 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141448
title: Speedlog data collected during research cruise AR43 using a Furuno DS-60 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141420
title: Flowmeter data collected during research cruise AR46 using a Thiel Thiel Flowmeter instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141419
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR46 using a Kongsberg DPS112 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141418
title: INS (Inertial Navigation System) data collected during research cruise AR46 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141421
title: Speedlog data collected during research cruise AR46 using a Furuno DS-60 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141422
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR46 using a Valeport Thru-Hull SVS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141423
title: Transmissometer data collected during research cruise AR46 using a Sea-Bird C-Star instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141424
title: Transmissometer data collected during research cruise AR46 using a Sea-Bird C-Star instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15468/epn4q9
title: The Australian endemic genera Mesystoechus Waterhouse, 1878, Amblochilus Blanchard, 1851, and Bilobatus Machatschke, 1970 revisited (Coleoptera Scarabaeidae: Rutelinae: Anoplognathini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Allsopp, Peter G. (2021): The Australian endemic genera Mesystoechus Waterhouse, 1878, Amblochilus Blanchard, 1851, and Bilobatus Machatschke, 1970 revisited (Coleoptera Scarabaeidae: Rutelinae: Anoplognathini). Zootaxa 4965 (2): 363-374, DOI: https://doi.org/10.11646/zootaxa.4965.2.9
DOI: 10.6084/m9.figshare.14579487
title: Supplementary Material for: Birthweight, Childhood Body Mass Index, Height and Growth, and Risk of Polycystic Ovary Syndrome

description: <b><i>Introduction:</i></b> Adult obesity is linked with polycystic ovary syndrome (PCOS), but the importance of body size at ages before PCOS is diagnosed is unknown. <b><i>Objective:</i></b> To investigate associations between a woman’s own birthweight, childhood body mass index (BMI), height and growth patterns in relation to her risk of PCOS. <b><i>Methods:</i></b> We included 65,665 girls from the Copenhagen School Health Records Register, born in the period 1960–1996, with information on birthweight and measured weight and height at the ages of 7–13 years. Overweight was defined using International Obesity Task Force (IOTF) criteria. From the Danish National Patient Register, 606 women aged 15–50 years were identified. Hazard ratios (HRs) and 95% confidence intervals (CIs) were estimated by Cox regression analysis. <b><i>Results:</i></b> Birthweight was not associated with PCOS. At the age of 7–13 years, girls with overweight had a higher risk of developing PCOS than girls without overweight; HR 2.83 (95% CI 2.34–3.42) at age 7 years and 2.99 (95% CI 2.38–3.76) at age 13 years. Furthermore, girls with overweight at both 7 and 13 years had a higher risk of developing PCOS than girls without overweight or overweight at only one age. Height was positively associated with PCOS risk at all ages. Girls who were persistently tall or changed from tall to average height had a higher risk of developing PCOS than girls with average height growth. <b><i>Conclusion:</i></b> Overweight and tall stature in childhood are positively associated with PCOS risk, but birthweight is not.
DOI: 10.6084/m9.figshare.14128886
title: Insect abundance at Olive-sided Flycatcher nest sites in boreal Alaska, 2016

description: Ordinal abundance of insects at Olive-sided Flycatcher nest sites in boreal Alaska.<br>We collected insects at 22 nest sites near Fairbanks, Alaska, and the Tetlin Wildlife Refuge, Alaska. We deployed four trap types: canopy Malaise traps, blue vane traps, yellow vane traps, and chemically-baited wasp traps. Specimens &lt; 3mm were excluded. <br>All specimens were archived in the University ofAlaska Museum Insect Collection.
DOI: 10.6084/m9.figshare.14128886.v1
title: Insect abundance at Olive-sided Flycatcher nest sites in boreal Alaska, 2016

description: Ordinal abundance of insects at Olive-sided Flycatcher nest sites in boreal Alaska.<br>We collected insects at 22 nest sites near Fairbanks, Alaska, and the Tetlin Wildlife Refuge, Alaska. We deployed four trap types: canopy Malaise traps, blue vane traps, yellow vane traps, and chemically-baited wasp traps. Specimens &lt; 3mm were excluded. <br>All specimens were archived in the University ofAlaska Museum Insect Collection.
DOI: 10.5285/ca00a04014ad4426abc03e952f793dde
title: SG-WEx: Unified Model output for July 2015 over South Georgia, with island orography included (run: u-ab326)

description: This dataset contains modelling output from the u-ab326 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period July 2015 with the island orography included. See related dataset for output from a complementary run with a flat orography file for the island for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.5285/4edcd686e1e74e2f8e4cf108eb054cc8
title: SG-WEx: Unified Model output for July 2015 over South Georgia, without island orography (run: u-ab978)

description: This dataset contains modelling output from the u-ab978 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period July 2015 with a flat orography file for the island. See related dataset for output from a complementary run with the island's orography included for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.5285/9314b7b6417049beb18570632b435e5b
title: SG-WEx: Unified Model output for January 2015 over South Georgia, without island orography (run: u-ag706)

description: This dataset contains modelling output from the u-ag706 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period January 2015 with a flat orography file for the island. See related dataset for output from a complementary run with the island's orography included for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.25375/uct.14560041
title: Hot days are associated with short-term adrenocortical responses in a southern African arid-zone passerine bird: dataset

description: Data ('Data set.csv') and associated metadata ('DataMeta.csv') underlying the publication "Hot days are associated with short-term adrenocortical responses in a southern African arid-zone passerine bird" in the <i>Journal of Experimental Biology</i> (doi:10.1242/jeb.242535).<br>Data include details of glucocorticoid metabolite concentrations in Southern Pied Babbler feces, collected from a free-ranging population of these birds at Kuruman River Reserve in the Northern Cape, South Africa, in 2018 and 2019. Data also include information on the dates and time feces were collected and frozen, air temperatures recorded on the day of collection and the day prior, and the identity of the individual birds from which the feces were collected, including their social group membership, dominance status, sex, social group size and breeding status. <br><b>Collaboration between: </b>FitzPatrick Institute of African Ornithology, Department of Biological Sciences, University of Cape Town;Department of Nature Conservation, Tshwane University of Technology;Department of Zoology and Entomology, University of Pretoria;Mammal Research Institute, University of Pretoria;Centre for Evolutionary Biology, School of Biological Sciences, University of Western Australia;South African National Biodiversity Centre;National Zoological Gardens.
DOI: 10.25375/uct.14560041.v1
title: Hot days are associated with short-term adrenocortical responses in a southern African arid-zone passerine bird: dataset

description: Data ('Data set.csv') and associated metadata ('DataMeta.csv') underlying the publication "Hot days are associated with short-term adrenocortical responses in a southern African arid-zone passerine bird" in the <i>Journal of Experimental Biology</i> (doi:10.1242/jeb.242535).<br>Data include details of glucocorticoid metabolite concentrations in Southern Pied Babbler feces, collected from a free-ranging population of these birds at Kuruman River Reserve in the Northern Cape, South Africa, in 2018 and 2019. Data also include information on the dates and time feces were collected and frozen, air temperatures recorded on the day of collection and the day prior, and the identity of the individual birds from which the feces were collected, including their social group membership, dominance status, sex, social group size and breeding status. <br><b>Collaboration between: </b>FitzPatrick Institute of African Ornithology, Department of Biological Sciences, University of Cape Town;Department of Nature Conservation, Tshwane University of Technology;Department of Zoology and Entomology, University of Pretoria;Mammal Research Institute, University of Pretoria;Centre for Evolutionary Biology, School of Biological Sciences, University of Western Australia;South African National Biodiversity Centre;National Zoological Gardens.
DOI: 10.5285/6cd2bd9bf3e143009a7df234e4a8f55c
title: SG-WEx: Unified Model output for January 2015 over South Georgia, with island orography included (run: u-ag477)

description: This dataset contains modelling output from the u-ag477 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period January 2015 with the island orography included. See related dataset for output from a complementary run with a flat orography file for the island for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.5285/6af300ef78e649e38719f1e1a53007f1
title: SG-WEx: Unified Model output for June-July 2015 over South Georgia, with island orography included (run: u-ae766)

description: This dataset contains modelling output from the u-ae766 run of a high-resolution (1.5 km horizontal grid, 118 vertical levels up to around 75 km altitude, 30 s timestep) local-area configuration of the Met Office Unified Model run in a box over the island of South Georgia (54S, 36W), as part of the South Georgia Wave Experiment (SG-WEx) project. This run was for the time period June-July 2015 with the island orography included. See related dataset for output from a complementary run with a flat orography file for the island for the same time period. These were part of a group of 6 model runs for the SG-WEx project. The aim of the modelling runs was to examine gravity wave generation and deep vertical propagation over this mountainous island. Three model time periods are archived within the SG-WEx dataset collection: January 2015, June 2015 and July 2015, each containing two runs, one including the island's orography and one without. Initial and boundary conditions are supplied by a global forecast to ensure that conditions over the island remain realistic. Meteorological fields such as wind, temperature, pressure etc were outputted and saved in hourly steps. These runs also coincided with radiosonde campaigns launched from the island. Technical details regarding the configuration of these runs is described Vosper (2015, doi:10.1002/qj.2566). Further information and science results can be found in Jackson et al. (2018, doi:10.1175/BAMS-D-16-0151.1) and Hindley (2021, doi:10.5194/acp-2020-465). See online resources linked to this record for further details.
DOI: 10.5281/zenodo.4751640
title: Eucalyptus project

description: Project files consist of numeric data above-ground vegetation attributes, soil-stored seed bank, soil physico-chemical properties collected in the Berg River, Western Cape, South Africa
description: PhD project
DOI: 10.5281/zenodo.4751639
title: Eucalyptus project

description: Project files consist of numeric data above-ground vegetation attributes, soil-stored seed bank, soil physico-chemical properties collected in the Berg River, Western Cape, South Africa
description: PhD project