cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17171/2-3
title: Architectural Fragments from Magnesia on the Maeander
title: Methods of architectural documentation/polychromy (pilot project)

description: Three architectural fragments were recorded with photography, architectural drawings by hand, different techniques of 3D scanning, and Reflectance Transformation Imaging (RTI)

Project partnes are the Staatliche Museen zu Berlin - Antikensammlung, Freie Universität Berlin (Insitut für Klassische Archäologie), Deutsches Archäologisches Institut (Architekturreferat), Technische Universität Berlin (Fachgebiet Historische Bauforschung), Staatliche Museen zu Berlin - Rathgen-Forschungslabor and Excellence Cluster 264 Topoi.
DOI: 10.17171/2-4
title: Roman Villa of Capo di Sorrento
title: : In Roman times, the Gulf of Naples was brimming with luxurious houses along the bay. The villa del Capo di Sorrento is an example par excellence for the Roman maritime villae. Built on the limestone slopes west of Sorrento, surrounded almost completely by the sea, it forms a prominent landmark on the south side of the gulf of Naples. The results of excavation and survey campaigns, including underwater recognition of the harbor basins, allow new assumptions concerning the original layout of the pars maritima and its elaborate harbor, the design of the decorative program as well as the appearance of the yet lesser known pars rustica, which extended at least on three great artificial terraces overlooking the cape and partly resting upon great vaulted cisterns. These enormous reservoirs which were connected and probably supplied by an aqueduct speak for an intensive use of water for both the agricultural and luxurious aspects of the villa. The terraces which until today dominate the appearance of the Cape of Sorrento are a key to the understanding of the manner in which the owner and his architect changed and (re-)designed the natural outline of this very special place - a central topic in Roman villegiatura and the respective literary sources.

description: In Roman times, the Gulf of Naples was brimming with luxurious houses along the bay. The villa del Capo di Sorrento is an example par excellence for the Roman maritime villae. Built on the limestone slopes west of Sorrento, surrounded almost completely by the sea, it forms a prominent landmark on the south side of the gulf of Naples. The results of excavation and survey campaigns, including underwater recognition of the harbor basins, allow new assumptions concerning the original layout of the pars maritima and its elaborate harbor, the design of the decorative program as well as the appearance of the yet lesser known pars rustica, which extended at least on three great artificial terraces overlooking the cape and partly resting upon great vaulted cisterns. These enormous reservoirs which were connected and probably supplied by an aqueduct speak for an intensive use of water for both the agricultural and luxurious aspects of the villa. The terraces which until today dominate the appearance of the Cape of Sorrento are a key to the understanding of the manner in which the owner and his architect changed and (re-)designed the natural outline of this very special place - a central topic in Roman villegiatura and the respective literary sources.
DOI: 10.5281/zenodo.806194
title: Research Data Supporting "Enzyme Prodrug Therapy Engineered Into Electrospun Fibers With Embedded Liposomes For Controlled, Localized Synthesis Of Therapeutics"

description: Research data supporting the publication: Chandrawati R. et al., 2017, Enzyme Prodrug Therapy Engineered into Electrospun Fibers with Embedded Liposomes for Controlled, Localized Synthesis of Therapeutics, Advanced Healthcare Materials. DOI: 10.1002/adhm.201700385
DOI: 10.5281/zenodo.806193
title: Research Data Supporting "Enzyme Prodrug Therapy Engineered Into Electrospun Fibers With Embedded Liposomes For Controlled, Localized Synthesis Of Therapeutics"

description: Research data supporting the publication: Chandrawati R. et al., 2017, Enzyme Prodrug Therapy Engineered into Electrospun Fibers with Embedded Liposomes for Controlled, Localized Synthesis of Therapeutics, Advanced Healthcare Materials. DOI: 10.1002/adhm.201700385
DOI: 10.5281/zenodo.826777
title: Datasets For Figure Files In "A Map Of High Mobility Molecular Semiconductors", Nature Materials (2017)

description: The data contained here correspond to the figure files appearing in the work "A map of high mobility molecular semiconductors", published in Nature Materials (2017)
DOI: 10.5281/zenodo.826778
title: Datasets For Figure Files In "A Map Of High Mobility Molecular Semiconductors", Nature Materials (2017)

description: The data contained here correspond to the figure files appearing in the work "A map of high mobility molecular semiconductors", published in Nature Materials (2017)
DOI: 10.5258/soton/d0165
title: 2D Ising Model MC Data

description: Dataset supporting: Waters, J. M. et al (2017). Identification of Curie temperature distributions in magnetic particulate systems. Journal Of Physics D.Results of Monte Carlo simulations of the 2D Ising model using disordered grains. Subfolders are labelled according to the size or distribution of sizes that are modelled, within those folders are the samples at different temperatures. The first column is magnetisation, the second is energy, the third is number of total spins.
DOI: 10.5281/zenodo.826427
title: Data And Code To Accompany The Manuscript Phillipsite And Al-Tobermorite Mineral Cements Produced Through Low-Temperature Water-Rock Reactions In Roman Marine Concrete, American Mineralogist

description: EPMA data and code used to produce figures in the publication.
DOI: 10.5281/zenodo.826428
title: Data And Code To Accompany The Manuscript Phillipsite And Al-Tobermorite Mineral Cements Produced Through Low-Temperature Water-Rock Reactions In Roman Marine Concrete, American Mineralogist

description: EPMA data and code used to produce figures in the publication.
DOI: 10.5258/soton/d0164
title: Dataset supporting the article entitled "Energy-Efficient Run-time Mapping and Thread Partitioning of Concurrent OpenCL Applications on CPU-GPU MPSoCs"

description: This dataset supports the article entitled "Energy-Efficient Run-time Mapping and Thread Partitioning of Concurrent OpenCL Applications on CPU-GPU MPSoCs" accepted for publication in ACM Transactions on Embedded Computing Systems, Special Issue on ACM/IEEE International Conference on Hardware/Software Codesign and System Synthesis, October 2017.
DOI: 10.5285/1f44795b-e596-433c-b69f-caf674880daa
title: Amundsen-Ross sea ice reconstruction based on data from the Ferrigno ice core (F10), Bryan Coast, West Antarctica

description: This dataset provides a 308 year record of methansulphonic acid (MSA) from coastal West Antarctica, representing sea ice conditions in the Amundsen-Ross Sea. Annual average MSA has been calculated from the 136 m Ferrigno ice core (F10), drilled on the Bryan Coast in Ellsworth Land, West Antarctica during the austral summer 2010/11. The sea ice extent is based on geometric mean regression of MSA flux with satellite sea ice extent from 146 degrees west. The record was measured using a Dionex ICS2500 anion system at 5 cm resolution, corresponding to approximately 14 samples a year.
DOI: 10.5258/soton/d0146
title: Dataset for Nonlinear Propagation of Supersonic Fan Tones in Turbofan Intake Ducts

description: Dataset supports an AIAA journal article titled "Nonlinear Propagation of Supersonic Fan Tones in Turbofan Intake Ducts".Funded by a Dorothy Hodgkin Postgraduate Award funded by the EPSRC and Rolls–Royce, plc.
DOI: 10.17632/jfm6tvskmg.2
title: Data for: Synergistic effects of extreme temperature and low salinity on foundational macroalga Fucus vesiculosus in the northern Baltic Sea

description: This dataset contains parameters measured in Takolander et al. 2017: "Synergistic effects of extreme temperature and low salinity on foundational macroalga Fucus vesiculosus in the northern Baltic Sea". Parameters and measurement protocols are covered in the Methods section of the manuscript and the Supplementary information file. In the file, uniq.id is an unique identifier separating each algal individual in the study. Jar id is a unique jar identifier (1 jar contained 2 algae individuals, one from each site). Suffixes ".heat" and ".recov" refer to measurements conducted either directly after 8 days heat treatment or after 11 days recovery period (see manuscript for details).
DOI: 10.17034/72e99568-ff75-4a0c-be5c-3b316bacea7e
title: STAMPP (Clustered RCT) Primary Outcome analysis dataset

description: This is the dataset (.dat file) for the STAMPP trial primary outcome analysis. The file does not contain a column header row (i.e. no variable names at the top). The variable names and labels are contained within a separate document.
DOI: 10.5285/bc114581-413a-4c62-adb6-556155901f68
title: Snow accumulation from the Gomez ice core (GZ07), South-western Antarctic Peninsula

description: This dataset provides an annual snow accumulation record from the Gomez (GZ07) ice core, dating back to the 1850s. The 136 m core was drilled on the South-western Antarctic Peninsula, during January 2007. The annual accumulation record was derived using two methods: a winter-winter value determined from the winter trough in H2O2 and nonsea-salt (nns) SO4 and a summer-summer value based on the summer peak in H2O2 and nssSO4. Snow accumulation is converted to meters of water equivalent (weq - m) based on measured density profile and correcting for thinning using the Nye model, assuming a linear vertical strain rate through the total depth of the core. The samples were analysed at very high resolution (approximately 10 mm, average 90 samples per year) using the Continuous Flow Analysis with Trace Elements-Dual (CFA-TED) method. The temporal length of the core is 152 years, encompassing 1855-2006 and the estimated uncertainty in the dating is plus/minus 1 year from 1855 to 1875 and less than 1 year from 1875 to 2006.
DOI: 10.7487/2017.194.1.1068
title: Rebecca Griffiths

description: all ceratium and rhizosolenia for 3 sub-regions
DOI: 10.5281/zenodo.826905
title: Training Material For Small Rna-Seq Data Analysis (Galaxy Training Network Tutorial)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes small RNA-seq (sRNA-seq) data from a study published by Harrington et al. (DOI:10.1186/s12864-017-3692-8) to detect differential abundance of various classes of endogenous short interfering RNAs (esiRNAs). The goal of this study was to investigate "connections between differential retroTn and hp-derived esiRNA processing and cellular location, and to investigate the potential link between mRNA 3’ end cleavage and esiRNA biogenesis." To this end, sRNA-seq libraries were constructed from triplicate <em>Drosophila</em> tissue culture samples under conditions of either control RNAi or RNAi knockdown of a factor involved in mRNA 3’ end processing, <em>Symplekin</em>. This dataset (GEO Accession: GSE82128) consists of single-end, size-selected, non-rRNA-depleted sRNA-seq libraries. Because of the long processing time for the large original files, we have downsampled the original raw data files to include only reads that align to a subset of interesting transcript features including: (1) transposable elements, (2) <em>Drosophila</em> piRNA clusters, (3) <em>Symplekin</em>, and (4) genes encoding mass spectrometry-defined protein binding partners of <em>Symplekin</em> from Additional File 2 in the indicated paper by Harrington et al. More details on features 1 and 2 can be found here: https://github.com/bowhan/piPipes/blob/master/common/dm3/genomic_features (piRNA_Cluster, Trn). All features are from the <em>Drosophila</em> genome Apr. 2006 (BDGP R5/<em>dm3</em>) release.
description: {"references": ["Harrington, AW et al. Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations. 18, 304 (2017).", "Afgan, E et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. 44, W3\u2013W10 (2016)."]}
DOI: 10.5281/zenodo.826906
title: Training Material For Small Rna-Seq Data Analysis (Galaxy Training Network Tutorial)

description: The data provided here are part of a Galaxy Training Network tutorial that analyzes small RNA-seq (sRNA-seq) data from a study published by Harrington et al. (DOI:10.1186/s12864-017-3692-8) to detect differential abundance of various classes of endogenous short interfering RNAs (esiRNAs). The goal of this study was to investigate "connections between differential retroTn and hp-derived esiRNA processing and cellular location, and to investigate the potential link between mRNA 3’ end cleavage and esiRNA biogenesis." To this end, sRNA-seq libraries were constructed from triplicate <em>Drosophila</em> tissue culture samples under conditions of either control RNAi or RNAi knockdown of a factor involved in mRNA 3’ end processing, <em>Symplekin</em>. This dataset (GEO Accession: GSE82128) consists of single-end, size-selected, non-rRNA-depleted sRNA-seq libraries. Because of the long processing time for the large original files, we have downsampled the original raw data files to include only reads that align to a subset of interesting transcript features including: (1) transposable elements, (2) <em>Drosophila</em> piRNA clusters, (3) <em>Symplekin</em>, and (4) genes encoding mass spectrometry-defined protein binding partners of <em>Symplekin</em> from Additional File 2 in the indicated paper by Harrington et al. More details on features 1 and 2 can be found here: https://github.com/bowhan/piPipes/blob/master/common/dm3/genomic_features (piRNA_Cluster, Trn). All features are from the <em>Drosophila</em> genome Apr. 2006 (BDGP R5/<em>dm3</em>) release.
description: {"references": ["Harrington, AW et al. Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations. 18, 304 (2017).", "Afgan, E et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update. 44, W3\u2013W10 (2016)."]}
DOI: 10.5285/53a2def3-2926-5c26-e053-6c86abc056b5
title: Sea surface temperature (SST) measurements collected by surfers around the southern UK and western Ireland coastline between 2014 and 2017.

description: This dataset consists of sea surface temperature (SST) data collected by recreational surfers around the southern UK and Western Ireland coastline over the period from 5th January 2014 to 8th February 2017. These data were collected as part of a research project supported by Plymouth Marine Laboratory. Over the study period, the recreational surfers collected 297 independent samples of SST. The surfers were equipped with a UTBI-001 Tidbit V2 Temperature Data Logger and a Garmin etrex 10 GPS. The Garmin etrex 10 device was used to extract GPS information (latitude and longitude) for each surf. The Tidbit V2 temperature logger was attached, using cable-ties, at mid-point to the leash of the surfboards to ensure continuous contact with seawater when surfing, measuring temperature in the top metre of the water column. Roughly every 6 months over the study period, the Tidbit V2 temperature loggers were rigorously compared with a VWR1620-200 traceable digital thermometer (with an accuracy of 0.05 degrees C at the range of 0 to 100 degrees C) at 1 degree C intervals from 6 to 25 degrees C using a PolyScience temperature bath. Over the study period, all sensors performed within the manufacturers technical specifications. A piecewise regression to model was used to correct any Tidbit V2 temperature data collected to remove systematic biases between sensors, such that the errors in each sensor were within the accuracy of VWR1620-200 traceable digital thermometer. Temperature data were collected at 10 second intervals during each surfing session. The data were processed to remove any data collected before and after entering the water and SST were extracted by computing the median of the remaining data. Standard deviations on the remaining data are also provided to give an index of SST variability during each surf session.
DOI: 10.5281/zenodo.826855
title: Expression And Purification Of Huntingtin Interacting Protein Hmgb1 2017/07/07

description: Huntingtin structure-function open lab notebook
DOI: 10.5281/zenodo.826856
title: Expression And Purification Of Huntingtin Interacting Protein Hmgb1 2017/07/07

description: Huntingtin structure-function open lab notebook
DOI: 10.15139/s3/0pk4dq
title: DBLP ACM Dataset
DOI: 10.5061/dryad.ng76g/5
title: Dryad Item 10.5061/DRYAD.NG76G/5

description: (:tba)
DOI: 10.5281/zenodo.826446
title: Dynamics Of Individual T Cell Repertoires: From Cord Blood To Centenarians

description: The dataset contains processed T-cell receptor repertoire sequencing data from 79 individuals of different sex and age, originally published in [1] and [2]. Note that [1] describes only a subset of samples, while [2] describes the full cohort.

The libraries were prepared using a 5'RACE protocol and sequenced on HiSEQ. The libraries incorporate unique molecular identifier (UMI) tags that were mainly used for counting cDNA molecules. Preprocessing was performed using the MIGEC software [3] as follows: all UMI tags represented by a single sequencing read were discarded, the remaining UMI tags were used to assemble cDNA consensus sequences. Note that this procedure eliminates most of cross-sample contamination (batch effect) as described in [2]. VDJ partitioning and CDR3 extraction was performed using MiTCR software [4], sequencing error correction was performed using ETE option in MiTCR. All datasets are converted into VDJtools [5] format, see http://vdjtools-doc.readthedocs.io/en/latest/input.html#vdjtools-format.

<strong>Sample description:</strong>


	The A* in sample identifier is the batch ID.
	Age and sex data is provided in the metadata.txt file.
	Samples having age "0" are umbilical cord blood samples.


<strong>Contributors:</strong>


	The T-cell repertoire aging study was a project ran in the Genomics of Adaptive Immunity Lab (Prof. Dmitry Chudakov)
	The samples were acquired, prepared and sequenced by Dr. Olga Britanova
	The data was analyzed and uploaded by Dr. Mikhail Shugay


<strong>Citations:</strong>


	[1] OV Britanova, EV Putintseva, M Shugay, EM Merzlyak, MA Turchaninova, et al. Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling. The Journal of Immunology 2014; 192 (6), 2689-2698
	[2] OV Britanova, M Shugay, EM Merzlyak, DB Staroverov, EV Putintseva, et al. Dynamics of individual T cell repertoires: from cord blood to centenarians. The Journal of Immunology 2016; 196 (12), 5005-5013
	[3] M Shugay, OV Britanova, EM Merzlyak, MA Turchaninova, IZ Mamedov, et al. Towards error-free profiling of immune repertoires. Nature methods 2014; 11 (6), 653-655
	[4] DA Bolotin, M Shugay, IZ Mamedov, EV Putintseva, MA Turchaninova, et al. MiTCR: software for T-cell receptor sequencing data analysis. Nature methods 2013; 10 (9), 813-814
	[5] M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, et al. VDJtools: unifying post-analysis of T cell receptor repertoires. PLoS computational biology 2015; 11 (11), e1004503
DOI: 10.5281/zenodo.826447
title: Dynamics Of Individual T Cell Repertoires: From Cord Blood To Centenarians

description: The dataset contains processed T-cell receptor repertoire sequencing data from 79 individuals of different sex and age, originally published in [1] and [2]. Note that [1] describes only a subset of samples, while [2] describes the full cohort.

The libraries were prepared using a 5'RACE protocol and sequenced on HiSEQ. The libraries incorporate unique molecular identifier (UMI) tags that were mainly used for counting cDNA molecules. Preprocessing was performed using the MIGEC software [3] as follows: all UMI tags represented by a single sequencing read were discarded, the remaining UMI tags were used to assemble cDNA consensus sequences. Note that this procedure eliminates most of cross-sample contamination (batch effect) as described in [2]. VDJ partitioning and CDR3 extraction was performed using MiTCR software [4], sequencing error correction was performed using ETE option in MiTCR. All datasets are converted into VDJtools [5] format, see http://vdjtools-doc.readthedocs.io/en/latest/input.html#vdjtools-format.

<strong>Sample description:</strong>


	The A* in sample identifier is the batch ID.
	Age and sex data is provided in the metadata.txt file.
	Samples having age "0" are umbilical cord blood samples.


<strong>Contributors:</strong>


	The T-cell repertoire aging study was a project ran in the Genomics of Adaptive Immunity Lab (Prof. Dmitry Chudakov)
	The samples were acquired, prepared and sequenced by Dr. Olga Britanova
	The data was analyzed and uploaded by Dr. Mikhail Shugay


<strong>Citations:</strong>


	[1] OV Britanova, EV Putintseva, M Shugay, EM Merzlyak, MA Turchaninova, et al. Age-related decrease in TCR repertoire diversity measured with deep and normalized sequence profiling. The Journal of Immunology 2014; 192 (6), 2689-2698
	[2] OV Britanova, M Shugay, EM Merzlyak, DB Staroverov, EV Putintseva, et al. Dynamics of individual T cell repertoires: from cord blood to centenarians. The Journal of Immunology 2016; 196 (12), 5005-5013
	[3] M Shugay, OV Britanova, EM Merzlyak, MA Turchaninova, IZ Mamedov, et al. Towards error-free profiling of immune repertoires. Nature methods 2014; 11 (6), 653-655
	[4] DA Bolotin, M Shugay, IZ Mamedov, EV Putintseva, MA Turchaninova, et al. MiTCR: software for T-cell receptor sequencing data analysis. Nature methods 2013; 10 (9), 813-814
	[5] M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, et al. VDJtools: unifying post-analysis of T cell receptor repertoires. PLoS computational biology 2015; 11 (11), e1004503
DOI: 10.17039/ameslab.dmse.2017.ds9/1369302
title: Thermally activated diffusion of copper into amorphous carbon
DOI: 10.5281/zenodo.826874
title: Rethomic Tutorial Data

description: Dataset to test and learn rethomics, an R package to quantify animal behaviour (http://gilestrolab.github.io/rethomics/)
DOI: 10.5281/zenodo.826875
title: Rethomic Tutorial Data

description: Dataset to test and learn rethomics, an R package to quantify animal behaviour (http://gilestrolab.github.io/rethomics/)
DOI: 10.5281/zenodo.826876
title: Appendix 1 Self-Medication Study Questionnaire

description: Self-medication study questionnaire
DOI: 10.5281/zenodo.826877
title: Appendix 1 Self-Medication Study Questionnaire

description: Self-medication study questionnaire
DOI: 10.14457/su.res.2016.56
title: การโคลนนิ่งยีนเคอราติเนสจาก Fervidobacterium spp. ชอบร้อนสูงที่แยกได้จากน้ำพุร้อน ในประเทศไทย สำหรับกำจัดขยะขนสัตว์ปีกจากโรงฆ่าสัตว์
DOI: 10.14457/sdu.res.2016.31
title: ปัจจัยส่วนประสมทางการตลาดที่มีผลต่อการตัดสินใจในการเลือก ศูนย์ดูแลเนอร์สซิ่งโฮมให้กับผู้สูงอายุ ในเขตกรุงเทพมหานครและปริมณฑล
DOI: 10.14457/sdu.res.2016.32
title: การเปรียบเทียบชนิดของน้ำต่อความคงสภาพของสารให้ความข้นหนืดทางเครื่องสำอาง
DOI: 10.14457/stou.res.2015.3
title: การพัฒนารูปแบบศูนย์การเรียนด้วยตนเอง เรื่องเศรษฐกิจพอเพียง สำหรับนักเรียนประถมศึกษา
DOI: 10.14457/stou.res.2016.2
title: การเปิดเสรีทางการเงินกับการพัฒนาเศรษฐกิจ: แนวทางที่เหมาะสมในประเทศไทย
DOI: 10.14457/stou.res.2016.3
title: การพัฒนายุทธศาสตร์การบริหารจัดการความร่วมมือ การจัดการศึกษาและวิจัยทางสารสนเทศศาสตร์ ในประชาคมอาเซียน
DOI: 10.14457/ku.the.2006.1483
title: ปัจจัยที่มีผลต่อพฤติกรรมการแสดงออกทางอารมณ์ ของพยาบาลวิชาชีพในโรงพยาบาลชุมชน เขตภาคตะวันออกเฉียงเหนือ /
DOI: 10.14457/stou.res.2014.2
title: การพัฒนาตัวแบบการบริหารองค์กรปกครองส่วนท้องถิ่น สู่องค์การสมรรถนะสูง
DOI: 10.5281/zenodo.827189
title: Valiant Wing-Flap Configuration 4 - 50M/S

description: VALIANT Wing-Flap Configuration 4 - 50m/s without turbulence grids
DOI: 10.5281/zenodo.827190
title: Valiant Wing-Flap Configuration 4 - 50M/S

description: VALIANT Wing-Flap Configuration 4 - 50m/s without turbulence grids