cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23004563.v9
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.6084/m9.figshare.23443136
title: R-codes for statistical analyses and datasets for the analysis from Rapamycin supplementation of <i>Drosophila melanogaster</i> larvae results in less viable adults with smaller cells

description: The intrinsic sources of mortality relate to the ability to meet the metabolic demands of tissue maintenance and repair, ultimately shaping ageing patterns. Anti-ageing mechanisms compete for resources with other functions, including those involved in maintaining functional plasma membranes. Consequently, organisms with smaller cells and more plasma membranes should devote more resources to membrane maintenance, leading to accelerated intrinsic mortality and ageing. To investigate this unexplored trade-off, we reared <i>Drosophila melanogaster</i> larvae on food with or without rapamycin (a TOR pathway inhibitor) to produce small- and large-celled adult flies, respectively, and measured their mortality rates. Males showed higher mortality than females. As expected, small-celled flies (rapamycin) showed higher mortality than their large-celled counterparts (control), but only in early adulthood. Contrary to predictions, the median lifespan was similar between the groups. Rapamycin administered to adults prolonged life; thus, the known direct physiological effects of rapamycin cannot explain our results. Instead, we invoke indirect effects of rapamycin, manifested as reduced cell size, as a driver of increased early mortality. We conclude that cell size differences between organisms and the associated burdens of plasma membrane maintenance costs may be important but overlooked factors influencing mortality patterns in nature.
DOI: 10.6084/m9.figshare.23443136.v1
title: R-codes for statistical analyses and datasets for the analysis from Rapamycin supplementation of <i>Drosophila melanogaster</i> larvae results in less viable adults with smaller cells

description: The intrinsic sources of mortality relate to the ability to meet the metabolic demands of tissue maintenance and repair, ultimately shaping ageing patterns. Anti-ageing mechanisms compete for resources with other functions, including those involved in maintaining functional plasma membranes. Consequently, organisms with smaller cells and more plasma membranes should devote more resources to membrane maintenance, leading to accelerated intrinsic mortality and ageing. To investigate this unexplored trade-off, we reared <i>Drosophila melanogaster</i> larvae on food with or without rapamycin (a TOR pathway inhibitor) to produce small- and large-celled adult flies, respectively, and measured their mortality rates. Males showed higher mortality than females. As expected, small-celled flies (rapamycin) showed higher mortality than their large-celled counterparts (control), but only in early adulthood. Contrary to predictions, the median lifespan was similar between the groups. Rapamycin administered to adults prolonged life; thus, the known direct physiological effects of rapamycin cannot explain our results. Instead, we invoke indirect effects of rapamycin, manifested as reduced cell size, as a driver of increased early mortality. We conclude that cell size differences between organisms and the associated burdens of plasma membrane maintenance costs may be important but overlooked factors influencing mortality patterns in nature.
DOI: 10.6084/m9.figshare.23004563.v10
title: <strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction - Dataset</strong>

description: Dataset associated with the manuscript "<strong>Diurnal versus nocturnal pollination in a subalpine wetland: from network structure to plant reproduction</strong>" . Our study is the first to compare diurnal and nocturnal pollination networks from both the structural and reproductive perspectives.The results demonstrated that both diurnal and nocturnal pollinators played a significant role in plant reproduction, and the contribution to the reproduction of each plant might be species-specific.
DOI: 10.15151/esrf-es-1108064280
title: Multi-scale Multi-techniques investigations of Li-ion batteries: towards a European Battery Hub

description: In this science-driven Long-Term proposal, we propose a 3-years multi-beamline program tackling grand challenges for actual, emerging and future battery technologies. We will deploy advanced methodologies for accelerating research by setting new cooperation modes for multi-techniques multi-scale studies. Three chemistry-neutral scientific cases have been identified to fulfil this LTP: bulk-to-surface mechanisms, high energy system and smart sensing. Multiple, time-coordinated, interoperable spectroscopic, imaging & scattering techniques will be implemented. This proposal is the Pilot Phase towards a European Battery Hub aiming at accelerating workflows in battery research by optimizing the exceptional diversity of means available at ESRF. We expect to demonstrate the added value of a new “proposal” mechanism, e.g. science-driven beamtime allocation group, serving the fast growing, highly competitive and rapidly evolving European battery community.
DOI: 10.6084/m9.figshare.23443814
title: EvoPlay Supplementary data files

description: supplementary data file1 - align_gluc.txt - weblogo2.png <br> supplementary data file2 - supplementary data file2.xlsx
DOI: 10.6084/m9.figshare.23443814.v1
title: EvoPlay Supplementary data files

description: supplementary data file1 - align_gluc.txt - weblogo2.png <br> supplementary data file2 - supplementary data file2.xlsx
DOI: 10.34740/kaggle/dsv/5881607
title: 🇺🇦 Ukraine Conflict Twitter Dataset
DOI: 10.6084/m9.figshare.22301251
title: Raw hog deer DArTseq data and metadata

description: DArTsampleinfo.csv contains metadata for each sample sequenced in this study <br> DArT_RawData_HogDeer.csv contains the raw genotype data generated by Diversity Arrays Technology (Canberra, Aus), aligned to a red deer genome
DOI: 10.5517/ccdc.csd.cc2brkg4
title: CCDC 2167596: Experimental Crystal Structure Determination

description: Related Article: Mira Oh, Soohyun Um, Jae-Hyeon Jeong, Hyun-Jeong Ko, Seung Hyun Kim|2023|Phytochemistry|212|113724|doi:10.1016/j.phytochem.2023.113724
description: Related Article: MIRA OH|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23166290.v1
title: Self_Target_557class h5ad

description: filename is formated as : CellType_Repeat_Coding.h5ad h5ad with event counts stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs
DOI: 10.6084/m9.figshare.22807238.v1
title: filename is formated as : __.h5ad

description: h5ad with event frequency stored in adata.X event description saved in adata.var meta data for each Guide-Target pair saved in adata.obs
DOI: 10.34740/kaggle/dsv/5881763
title: Elon Musk Tweets
DOI: 10.5281/zenodo.8017732
title: Supplementary data for wave current scour prediction

description: This CSV file has data obtained, which is obtained from various works of literature containing Normalized scour depth around monopile foundations due to waves and currents.
DOI: 10.4121/980484ec-5187-4f73-9e57-2e0dcd1330cc.v2
title: Code and Data for "Availability and utilisation of airspace structure in a U-space traffic management system"

description: This contains the code and output logs to run the BlueSky simulator for "Availability and utilisation of airspace structure in a U-space traffic management system". The code provided here is a modified version of the main fork of BlueSky (https://github.com/TUDelft-CNS-ATM/bluesky).<br>The first step is to install the correct environment. Refer to `condaenv.txt` for the list of packages needed to run the simulator.<br>After setting up the environment, we then need to save all of the potential paths of drones in `bluesky/plugins/streets/path_plan_dills`. Note that this takes about 180GB of storage so make sure to have enough available. The paths can be downloaded from https://surfdrive.surf.nl/files/index.php/s/EcPGLvaBu7cZfTA. There are some example paths saved in this dataset but it will not be possible to run all of the experiment without downloading the paths.<br>The scenarios for sub-experiment 1 are saved in `bluesky/scenario/subexperiment1`.<br>The scenarios for sub-experiment 2 are saved in `bluesky/scenario/subexperiment2`.<br>To run the scenarios we first need to start a bluesky server by running the following code inside `bluesky`:<br>`python BlueSky.py --headless`<br>In another terminal we can start a bluesky client by running:<br>`python BlueSky.py --client`<br>In the bluesky console we can now run each batch scenario by typing and entering:<br>`batch batch_subexperiment_1.scn` or`batch batch_subexperiment_2.scn`<br>The logs of the scenarios are saved in `bluesky/output`.<br>Without the paths, it will not possible to run the simulations. However, this code currently has some paths so that it is possible to run some example scenarios. The zeroth repetition for the low imposed traffic demand case can be run without all of the paths. For example, `bluesky/scenario/subexperiment1/Flight_intention_low_40_0_1to1.scn` and `bluesky/scenario/subexperiment2/Flight_intention_low_40_0_baseline.scn` can be run directly with this dataset.<br>First start bluesky by running:<br>`python BlueSky.py`<br>In the console, type.<br>`ic subexperiment2/Flight_intention_low_40_0_baseline.scn`<br>Please do not hesistate to contact me with any questions.<br>-Andres<br><br>
DOI: 10.5281/zenodo.8019611
title: raw dataset related to the article "Patent foramen ovale closure with the Occlutech Figulla Flex II device: A long-term (up to 10-years) follow-up"

description: <strong>Abstract</strong> <strong>Background.</strong> Percutaneous closure represents the first line of treatment In patients with cryptogenic stroke and documented patent foramen ovale (PFO). Scarce data report the long-term outcomes of patients undergoing PFO closure with the Figulla Flex II device (Occlutech, Germany). <strong>Methods</strong>. Consecutive patients undergoing PFO closure with a Figulla Flex II device at a single, high-volume Institution were included. Baseline clinical and procedural features were collected and patients were followed up for up to 10 years. The device's long-term safety was assessed, as well as mortality, recurrent cerebrovascular events, new-onset atrial fibrillation (AF) and residual shunt. <strong>Results.</strong> Overall, 442 patients were included. The main indication for PFO closure was cryptogenic stroke/transitory ischemic attack (65.5%), followed by migraine (21.7%), silent lesions at MRI (10.8%), and decompression disease (2.0%). Atrial septal aneurysm was present in 20.8% of cases, Eustachian valve in 9.0%, Chiari network in 19.9%. The most frequently implanted device was the 23/25 mm (49.5% of cases). One procedural failure due to device embolization; in-hospital complications occurred in 15 cases (3.4%; 4 minor access site complications, 11 transient supraventricular tachycardias (SVT)/AF). After a follow-up of 9.2 years, 2 patients suffered recurrent TIA (with no residual R-L shunt detected). A moderate or severe residual shunt was observed in 3 patients after discharge. <strong>Conclusions</strong>. Figulla Flex II devices for PFO closure are associated with high procedural success and low incidence of adverse events even at long-term follow-up.
DOI: 10.5281/zenodo.8019610
title: raw dataset related to the article "Patent foramen ovale closure with the Occlutech Figulla Flex II device: A long-term (up to 10-years) follow-up"

description: <strong>Abstract</strong> <strong>Background.</strong> Percutaneous closure represents the first line of treatment In patients with cryptogenic stroke and documented patent foramen ovale (PFO). Scarce data report the long-term outcomes of patients undergoing PFO closure with the Figulla Flex II device (Occlutech, Germany). <strong>Methods</strong>. Consecutive patients undergoing PFO closure with a Figulla Flex II device at a single, high-volume Institution were included. Baseline clinical and procedural features were collected and patients were followed up for up to 10 years. The device's long-term safety was assessed, as well as mortality, recurrent cerebrovascular events, new-onset atrial fibrillation (AF) and residual shunt. <strong>Results.</strong> Overall, 442 patients were included. The main indication for PFO closure was cryptogenic stroke/transitory ischemic attack (65.5%), followed by migraine (21.7%), silent lesions at MRI (10.8%), and decompression disease (2.0%). Atrial septal aneurysm was present in 20.8% of cases, Eustachian valve in 9.0%, Chiari network in 19.9%. The most frequently implanted device was the 23/25 mm (49.5% of cases). One procedural failure due to device embolization; in-hospital complications occurred in 15 cases (3.4%; 4 minor access site complications, 11 transient supraventricular tachycardias (SVT)/AF). After a follow-up of 9.2 years, 2 patients suffered recurrent TIA (with no residual R-L shunt detected). A moderate or severe residual shunt was observed in 3 patients after discharge. <strong>Conclusions</strong>. Figulla Flex II devices for PFO closure are associated with high procedural success and low incidence of adverse events even at long-term follow-up.
DOI: 10.5281/zenodo.7944056
title: DigiPACT: Green Steaming and Green Routing Experiments

description: README DigiPACT This document provides supporting information for the data files of the DigiPACT project. 3d.zip 3D visualizations including the lab-scale vessel apr 12 2023 max guidance in the loop & working.zip Data recordings of the Port Call expriment conducted on April 12 (successful). jan 23 2023.zip Data recordings of the initial attempt at the Green Routing experiment conducted on January 23 (unsuccessful). jan 25 2023.zip Data recordings of the second attempt at the Green Routing experiment conducted on January 25 (unsuccessful). jan 30 2023.zip Data recordings of the third attempt at the Green Routing experiment conducted on January 30 (successful). mar 1 2023 velocity controller working first iteration.zip Data recordings of the Green Steaming experiment conducted on March 1 (successful). videos.zip Collection of videos made during the experiments.
description: This research was funded by Resilient Delta through Convergence and TKI D-OSP through RVO. This research is supported by the Researchlab Autonomous Shipping, Delft University of Technology.
DOI: 10.5281/zenodo.7944055
title: DigiPACT: Green Steaming and Green Routing Experiments

description: README DigiPACT This document provides supporting information for the data files of the DigiPACT project. 3d.zip 3D visualizations including the lab-scale vessel apr 12 2023 max guidance in the loop & working.zip Data recordings of the Port Call expriment conducted on April 12 (successful). jan 23 2023.zip Data recordings of the initial attempt at the Green Routing experiment conducted on January 23 (unsuccessful). jan 25 2023.zip Data recordings of the second attempt at the Green Routing experiment conducted on January 25 (unsuccessful). jan 30 2023.zip Data recordings of the third attempt at the Green Routing experiment conducted on January 30 (successful). mar 1 2023 velocity controller working first iteration.zip Data recordings of the Green Steaming experiment conducted on March 1 (successful). videos.zip Collection of videos made during the experiments.
description: This research was funded by Resilient Delta through Convergence and TKI D-OSP through RVO. This research is supported by the Researchlab Autonomous Shipping, Delft University of Technology.
DOI: 10.6084/m9.figshare.22656256.v1
title: Redox-neutral conversion of ubiquitous P<sup>V</sup> sources to a versatile PO<sub>2</sub><sup>+</sup> phosphorylation reagent

description: Supporting Information fo for the work: Redox-neutral conversion of ubiquitous PV sources to a versatile PO2+ phosphorylation reagent
DOI: 10.6084/m9.figshare.22656256
title: Redox-neutral conversion of ubiquitous P<sup>V</sup> sources to a versatile PO<sub>2</sub><sup>+</sup> phosphorylation reagent

description: Supporting Information fo for the work: Redox-neutral conversion of ubiquitous PV sources to a versatile PO2+ phosphorylation reagent
DOI: 10.6084/m9.figshare.22128713.v1
title: Local IL-17 orchestrates skin aging

description: We have found that increased local IL17 secreted by gamma/delta T cells, T helper 17 cells and ILCs, coordinate many of traits associated to skin aging, in particular those associated to increased inflammation. Importantly, inhibition of IL17 significantly ameliorates many of the aging related changes in the skin by boosting skin regeneration.
DOI: 10.6084/m9.figshare.22128713
title: Local IL-17 orchestrates skin aging

description: We have found that increased local IL17 secreted by gamma/delta T cells, T helper 17 cells and ILCs, coordinate many of traits associated to skin aging, in particular those associated to increased inflammation. Importantly, inhibition of IL17 significantly ameliorates many of the aging related changes in the skin by boosting skin regeneration.
DOI: 10.6084/m9.figshare.19651062.v1
title: Identification of a protective microglial state mediated by miR-155 and interferon-γ signaling in a mouse model of Alzheimer’s disease

description: Supplementary Tables for bulk RNAseq, single-cell RNAseq, proteomics data, and reagents
DOI: 10.6084/m9.figshare.21547515.v1
title: RsRubisco wild-type and chimer kinetics

description: All raw data, PAGE and DNA blots of Rhodobacter sphaeroides Rubisco mutants expressed in E. coli and tobacco plants
DOI: 10.6084/m9.figshare.19651062
title: Identification of a protective microglial state mediated by miR-155 and interferon-γ signaling in a mouse model of Alzheimer’s disease

description: Supplementary Tables for bulk RNAseq, single-cell RNAseq, proteomics data, and reagents
DOI: 10.6084/m9.figshare.21547515
title: RsRubisco wild-type and chimer kinetics

description: All raw data, PAGE and DNA blots of Rhodobacter sphaeroides Rubisco mutants expressed in E. coli and tobacco plants
DOI: 10.6084/m9.figshare.22654477.v1
title: Unlocking the Potential of Data Fusion and Multivariate Analysis for Food Authenticity Analysis: A Salmon Case Study

description: the raw data of salmon origin authenticity investigation by using ICP-MS and REIMS
DOI: 10.6084/m9.figshare.22654477
title: Unlocking the Potential of Data Fusion and Multivariate Analysis for Food Authenticity Analysis: A Salmon Case Study

description: the raw data of salmon origin authenticity investigation by using ICP-MS and REIMS
DOI: 10.6084/m9.figshare.22969004
title: A viral pan-end RNA element and host complex define a SARS-CoV-2 regulon

description: Numerical for all graphs in Main Figures and Supplementary Figures
DOI: 10.6084/m9.figshare.22583869
title: Empowering drug off-target discovery with metabolic and structural analysis

description: Source Data for all relevant plots have been provided
DOI: 10.6084/m9.figshare.22744079.v1
title: Direct Determination of High Order Transverse Ligand Field Parameters via µSQUID-EPR in a Et4N[160GdPc2] SMM

description: Experimental data for Figure 4a, 4c and 5
DOI: 10.6084/m9.figshare.22744079
title: Direct Determination of High Order Transverse Ligand Field Parameters via µSQUID-EPR in a Et4N[160GdPc2] SMM

description: Experimental data for Figure 4a, 4c and 5
DOI: 10.6084/m9.figshare.22933442.v1
title: In vivo PAR-CLIP (viP-CLIP) of liver TIAL1 unveils targets regulating cholesterol synthesis and secretion

description: Detailed protocol for viP-CLIP
DOI: 10.6084/m9.figshare.22578793.v1
title: Transcriptional control of pancreatic cancer immunosuppression by metabolic enzyme CD73 in a tumor-autonomous and -autocrine manner

description: Cancer cell metabolism contributes to the establishment of an immunosuppressive tumor microenvironment. Aberrant expression of CD73, a critical enzyme in ATP metabolism, on the cell surface results in the extracellular accumulation of adenosine, which exhibits direct inhibitory effects on tumor-infiltrating lymphocytes. However, little is known about the influence of CD73 on negative immune regulation-associated signaling molecules and transduction pathways inside tumor cells. This study aims to demonstrate the moonlighting functions of CD73 in immunosuppression in pancreatic cancer, an ideal model characterized by complex crosstalk among cancer metabolism, immune microenvironment, and immunotherapeutic resistance. The synergistic effect of CD73-specific drugs in combination with immune checkpoint blockade is observed in multiple pancreatic cancer models. Cytometry by time-of-flight analysis shows that CD73 inhibition reduces tumor-infiltrating Tregs in pancreatic cancer. Tumor cell-autonomous CD73 is found to facilitate Treg recruitment, in which CCL5 was identified as a crucial downstream effector of CD73 using integrated proteomic and transcriptomic analyses. CD73 transcriptionally upregulates CCL5 through tumor cell-autocrine adenosine–Adora2a signaling-mediated activation of the p38–STAT1 axis, recruiting Tregs to pancreatic tumors and causing an immunosuppressive microenvironment. Together, this study highlights that CD73–adenosine metabolism transcriptionally controls pancreatic cancer immunosuppression in a tumor-autonomous and -autocrine manner.
DOI: 10.6084/m9.figshare.22933442
title: In vivo PAR-CLIP (viP-CLIP) of liver TIAL1 unveils targets regulating cholesterol synthesis and secretion

description: Detailed protocol for viP-CLIP