cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x68xsh
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cytisus striatus",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 28 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011303-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/hjwtfz
title: Marine metagenome ICM_BSP

description: Seasonal dynamics of bacterioplankton communities in the Baltic Sea Proper.
DOI: 10.15468/ixegxv
title: Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea

description: The sediments were obtained from station Z02 located at the 20 m isobath south of Terrebonne Bay in the northern Gulf of Mexico (latitude 28.875oN; longitude 90.428oW). The cores were collected in April and September 2006.
DOI: 10.15468/dl.mmvhq3
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cytisus striatus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 161 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011304-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jsbvjz
title: Sediment river Genome sequencing and assembly

description: Bacterial community composition in sediment discharge at upper and lower reaches of Puyang river
DOI: 10.15468/dl.sfssuh
title: Occurrence Download

description: A dataset listing the 118 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Archaea"
 ]
}

 The dataset's 118 records were derived from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011289-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hpg5x4
title: Occurrence Download

description: A dataset containing 2248 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Timonius timon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2248 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011305-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/z4ysul
title: Benthic microbial communities (Bacteria, 16S) of coastal terrestrial and ice shelf Antarctic meltwater ponds

description: The investigation of bacterioplankton, mat and sediment microbial communities from the Bratina Island meltwater ponds in Late November 2009, January 2012 and January 2013 and from meltwater ponds at the mouth of the Miers Valley in January 2013 using 16S rRNA pyrosequencing. Ponds range in size from 1 to several hundred square meters in surface area, 1-4m in depth and represent a broad variety of unique geochemistries. They are formed in the landscape depressions and are maintained from local ice and snow melt.
DOI: 10.15468/n3gy8k
title: Archaea microbial communities structure in the sediment and downarea soil of the Fengshuba Reservoir in the Guangdong Provinve, South China

description: Archaea microbial communities structure in the sediment and downarea soil of the Fengshuba Reservoir in the Guangdong Provinve, South China
DOI: 10.15468/snooom
title: Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments

description: This study aimed to examine the composition and genetic diversity of bacterial, archaeal and fungal communities in surface sediments of a subtropical coastal wetland.
DOI: 10.15468/dl.mkxwkp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium calcareum)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011308-250920141307145/datasets/export for details.
DOI: 10.15468/p8gzhs
title: Spatiotemporal Baltic Sea area 18S metabarcoding from three projects performed in 2015-2017 (+storage test 2019)

description: The 16S (V3–V4) metabarcoding results presented here are described in detail in our manuscript and originate from the following sampling efforts: 1. Bi-weekly sampling along the Swedish marine monitoring program across twelve locations in Baltic Proper, Kattegat, and Skagerrak. For all the locations, sampling was performed between February 2016 and March 2017. Additionally, one station (Släggö, Skagerrak) was sampled from August 2015.2. Weekly sampling at multiple depths (5, 10, and 15 meters in most cases) at Tångesund, Sweden (Skagerrak), performed in 2016 between August 22nd and October 10th.3. Three longitudinal transects in Skagerrak, performed in 2016 on August 18th, 4. Replicate samples collected at Släggö marine station (Skagerrak) on the same date (August 20th 2019) and stored as filters before DNA extraction for 1 week, 1 month, 3 months, or 6 months, in either -20⁰C or -80⁰C.The extracted DNA was stored at -20⁰C until mid-2023 when the amplicon sequencing was performed. All the contextual data has been obtained from the SharkWeb portal maintained by the Swedish Meteorological and Hydrological Institute.This dataset was published via the SBDI ASV portal, and has been updated from 'Metadata only' to 'Occurrence' type.
DOI: 10.15468/0np3r2
title: Metagenomic community analysis of marine zooplankton using two plankton nets

description: Metagenomic analysis was conducted to evaluate effects of plankton nets on marine zooplankton community. Zooplankton samples were collected in the coastal water off Japan, using two types of plankton nets. PCR was performed to amplify 18S V7-V9 regions, and the 454-pyrosequencing run was carried out .
DOI: 10.6084/m9.figshare.28062344.v1
title: <b>Plant-derived environmental DNA reveals fine-scaled community differentiation in grassland arthropods</b>

description: Plant-derived eDNA Metabarcoding from herbaceous plants. Samples of 13 plant species from 6 sites and 6 plant species collected in each compartment (flower and green tissue). This project contains the raw data and metadata.
DOI: 10.5281/zenodo.17099699
title: Data and code for "Migratory swans individually adjust their autumn migration and winter range to a warming climate"

description: This Zenodo entry is a link to the data and code for "Migratory swans individually adjust their autumn migration and winter range to a warming climate", which is published on Figshare: http://doi.org/10.21942/uva.24083703

With this Zenodo entry, the Figshare doi is referenced in the Zenodo community representing the IBED PhD archive of Hans Linssen.
DOI: 10.5281/zenodo.17099698
title: Data and code for "Migratory swans individually adjust their autumn migration and winter range to a warming climate"

description: This Zenodo entry is a link to the data and code for "Migratory swans individually adjust their autumn migration and winter range to a warming climate", which is published on Figshare: http://doi.org/10.21942/uva.24083703

With this Zenodo entry, the Figshare doi is referenced in the Zenodo community representing the IBED PhD archive of Hans Linssen.
DOI: 10.15468/xqn0tq
title: 16S sequencing of environmental samples to test the impact of sediment source

description: The Broad Institute sequenced environmental samples to tests the impact of sediment source, supplemental cellulose source, and depth within Winogradsky columns, on microbial community structure. The study was conducted, in part, within introductory microbiology courses at Vassar College (Poughkeepsie, NY) and Williams College (Williamstown, MA). Sequencing was conducted at the Broad Institute (Cambridge, MA). Winogradsky columns were created from sediment collected near the edge of two small ponds (under approximately 15-30 cm of water) in late October 2008. Ponds were located near the campus of Williams College in Williamstown, Massachusetts: Buxton Pond (N 42.70o (42 o 42 15) W 73.2114 o (73 o 12 41) and Ephs Pond (N 42.7201o (42 o 43 12) W 73.1975 o (73 o 11 51).
DOI: 10.15468/v5u2uk
title: Uncultured Environmental Isolate Targeted loci environmental

description: This study highlights the potential for microbial activity to help remove chelating agents and radionuclides from groundwater during radioactive waste geodisposal.
DOI: 10.5281/zenodo.17100081
title: Data and code for "Tracking data as an alternative to resighting data for inferring population ranges"

description: This Zenodo entry is a link to the data and code for "Tracking data as an alternative to resighting data for inferring population ranges", which is published on Figshare: http://doi.org/10.21942/uva.25650978

With this Zenodo entry, the Figshare doi is referenced in the Zenodo community representing the IBED PhD archive of Hans Linssen.
DOI: 10.5281/zenodo.17100082
title: Data and code for "Tracking data as an alternative to resighting data for inferring population ranges"

description: This Zenodo entry is a link to the data and code for "Tracking data as an alternative to resighting data for inferring population ranges", which is published on Figshare: http://doi.org/10.21942/uva.25650978

With this Zenodo entry, the Figshare doi is referenced in the Zenodo community representing the IBED PhD archive of Hans Linssen.
DOI: 10.15468/iqze68
title: Eukaryote diversity assessment of sediments of the Western English Channel

description: Sediments were collected at monthly intervals from the Western English Channel (site L4) and environmental DNA extracted. The effect of season on the community composition and diversity of eukaryotes was assessed using in depth sequencing of 18S rRNA genes. This data will be compared with traditional techniques used to identify benthic species to assess the efficacy of eDNA biomonitoring as a tool for measuring biodiversity.
DOI: 10.15468/dl.spm7ym
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmanthus illinoensis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011310-250920141307145/datasets/export for details.
DOI: 10.15468/dl.u6cfrd
title: Occurrence Download

description: A dataset containing 3234 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tipuana tipu",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3234 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011309-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3pbazw
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Desmanthus illinoensis",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011311-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/9ya44h
title: RNA-Virome (RNA shotgun sequencing) from lake Limnopolar on Livingston Island (Antarctica)

description: RNA shotgun sequencing (454 pyrosequencing) metagenome dataset of viruses in lake Limnopolar (Livingston Island, Antarctica), over a three-year period.
DOI: 10.15468/vlbnaf
title: Picocyanobacterial diversity in temperate marginal seas

description: To elucidate the seasonal and spatial changes in picocyanobacterial diversity in temperate waters, baccoded amplicon pyrosequencing of 16S-23S internal transcribed spacer sequences was applied. Synechococcus and Prochlorococcus diversity in the East Sea and the East China Sea.
DOI: 10.5281/zenodo.17176380
title: Metabolomic profiles of human Brain-like endothelial cells and human brain pericytes treated with TNFalpha and different oxysterols

description: Human Brain-like endothelial cells (hBLECs) and human brain pericytes (hBPs) co-cultured together partially mimic the human blood-brain barrier. We treated cells with 10 ng/mL of TNFalpha and 10 µM of oxysterols (24S-hydroxycholesterol, 25-hydroxycholesterol and 7alpha,25-dihydroxycholesterol) for 24 hours. Targeted metabolomics profiles of the 2 cell types were then performed using UPLC/TQMS method.  These data support a publication which will be submitted soon. This publication will be added to this description when published.
DOI: 10.5281/zenodo.17176381
title: Metabolomic profiles of human Brain-like endothelial cells and human brain pericytes treated with TNFalpha and different oxysterols

description: Human Brain-like endothelial cells (hBLECs) and human brain pericytes (hBPs) co-cultured together partially mimic the human blood-brain barrier. We treated cells with 10 ng/mL of TNFalpha and 10 µM of oxysterols (24S-hydroxycholesterol, 25-hydroxycholesterol and 7alpha,25-dihydroxycholesterol) for 24 hours. Targeted metabolomics profiles of the 2 cell types were then performed using UPLC/TQMS method.  These data support a publication which will be submitted soon. This publication will be added to this description when published.
DOI: 10.15468/hjgas3
title: Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge

description: The marine microbial biogeography is gradually emerging a consensus. However, knowledge of the biodiversity, the biogeographic patterns and the factors influencing the distribution of deep-marine prokaryotes in distinct habitats at large scale is far from adequate. In this study, 16S rRNA gene Miseq-sequencing was used to survey the diversity and biogeography of prokaryotes from 39 sites across a broad geographic range, containing two obvious different habitats, hydrothermal and non-hydrothermal sediments. The deep marine sediment communities were highly diverse and Proteobacteria, Thaumarchaeota, Planctomycetes, Acidobacteria, Actinobacteria, Chloroflexi, Gemmatimonadetes, Nitrospirae and Bacteroidetes were dominant in both habitats with varied percentages. The composition of prokaryotic communities obviously diverged across environmental heterogeneity and large geographic distances.
DOI: 10.15468/opdnr4
title: cultured bacteria from enrichment culture Raw sequence reads

description: To targeted culture marine bacteria after enrichment culture
DOI: 10.15468/dl.zvmc72
title: Occurrence Download

description: A dataset containing 10787 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium canadense)"
 ]
}

 The dataset includes 10787 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011312-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/gcysrw
title: virome_antarctic_lakes_2010

description: Virome dataset based on shotgun 454 sequencing of virus-concentrated samples from lakes in the Antarctic Peninsula (2010).
DOI: 10.15468/dl.4gbavm
title: Occurrence Download

description: A dataset containing 2526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "DatasetKey is Observation.org, Nature data from around the World",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (CR, NT, VU, EN)",
 "Year 2000-2025"
 ]
}

 The dataset includes 2526 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011313-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/fcvqt7
title: Microbial community diversity in Arctic marine sediments and Planktonic microbial

description: This study assessed the microbial community composition in Arctic marine sediments by 454 pyrosequencing of the 16S rRNA gene and planktonic microbial community composition in an Arctic fjord by 454 pyrosequencing of the 16S rRNA and 18S rRNA genes.
DOI: 10.15468/lurd9w
title: Baltic Expression Project

description: cDNA samples were pyrosequenced using 16S rRNA primers. Samples from which cDNA was obtained were surface marine sediment samples from the Bothnian Bay (Baltic Sea) and Skagerrak (North Sea).
DOI: 10.15468/dl.wkpfaq
title: Occurrence Download

description: A dataset containing 23539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1912"
 ]
}

 The dataset includes 23539 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011300-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/tgj6ua
title: Advancing airDNA Experiment 1 16Smamm

description: [This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
DOI: 10.15468/dl.aqs2b6
title: Occurrence Download

description: A dataset containing 1956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carex gibba"
 ]
}

 The dataset includes 1956 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011314-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5axhd4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dorycnium hirsutum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011316-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/m7ys8x
title: Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay

description: Microbial ecology of archaeal community
DOI: 10.15468/nbxjxb
title: BrdU_MAB_SS Metagenome

description: Marine bacterial communities of the Mid-Atlantic Bight and Sargasso Sea
DOI: 10.15468/dl.pq7668
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dorycnium hirsutum",
 "Country is Germany",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011317-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/kfqv4g
title: Microbial communities in marine surface water

description: To investigate the biogeographic patterns of microbial communities in surface water from Indian Ocean to Chinese marginal seas
DOI: 10.15468/g4x26w
title: Advancing airDNA Experiment 1 BirT

description: This dataset is associated with the manuscript "Advanced airborne eDNA sampling allows robust spatiotemporal characterisation of vertebrate communities" (DOI to follow)

Abstract 
Effective biodiversity survey methods are crucial for monitoring ecosystems threatened by climatic fluctuations and anthropogenic pressures. Here we advance methods for the collection of a novel source of biodiversity data - airborne environmental DNA (eDNA) - and investigate whether it yields habitat- and season-specific signatures of terrestrial vertebrate communities. Using portable and low budget samplers, we sampled airborne eDNA in three protected nature areas across Denmark and show that air filters with a large surface area and the widest range of particle retention sizes yield detections of higher numbers of vertebrate taxa and show higher community homogeneity across samples. Further, we show that increased airflow rate and dry storage of filters − 20°C yield detections of more diverse and consistent vertebrate communities. Overall, we demonstrate that airborne eDNA yields robust detections of spatio-temporal dynamics across terrestrial vertebrate classes, which can be adapted by conservation programs to monitor terrestrial biodiversity across the globe.[This dataset was processed using the GBIF Metabarcoding Data Toolkit.]
DOI: 10.15468/um2fl6
title: Microbial community structure or iron oxyhydroxides rich mound in Satsuma Iwo-jima, Japan

description: Iron oxyhydroxides rich mounds are observed at the bottom of Nagahama bay where iron and silica rich thermal fluid is discharged. The microbial community structure was investigated using V4 region of 16S rRNA gene.
DOI: 10.15468/dl.btbnwp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dorycnium hirsutum",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011318-250920141307145/datasets/export for details.
DOI: 10.15468/dl.d7cj7p
title: Occurrence Download

description: A dataset containing 1627 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium carinatum pulchellum)"
 ]
}

 The dataset includes 1627 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011320-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.