cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7391831
title: Additional file 1: of Sex chromosomal dimorphisms narrated by X-chromosome translocation in a spiny frog (Quasipaa boulengeri)

description: Table S1. Sequence data of the sex-linked marker B08 in Quasipaa boulengeri. (XLSX 14.6 kb)
DOI: 10.25582/data.2021-08.2305273/2286635
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2021-11.2387265/2286636
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-09.2610440/2286637
title: Data for EMSL Project 51834 from September 2022
DOI: 10.6084/m9.figshare.14286548
title: The association between body mass index and varicocele: A meta-analysis

description: ABSTRACT Objective: Recently, several studies have found that obesity had a protective effect against varicocele, but no meta-analysis has confirmed this finding. Therefore, we conducted this meta-analysis to investigate the association between body mass index (BMI) and varicocele. Material and Methods: We searched for studies in PubMed, Science Direct and the Cochrane Library from inception until February 2018. The association between BMI and varicocele was assessed by pooling the odds ratios (ORs). Results: Eleven eligible studies with a total study population of 1.376.658 participants were included in our analysis. According to BMI, the subjects were defined as belonging to the obese, overweight and underweight groups. Our results showed that the obese group had a lower risk of varicocele when compared with the normal weight group (odds ratio [OR] 0.46, 95% confidence intervals [CIs] 0.37-0.58). Additionally, an overweight BMI had a protective effect against varicocele (OR 0.70, 95% CIs, 0.56-0.86). However, underweight patients had a more than 30% higher risk of varicocele (OR 1.31, 95% CI, 1.04-1.64). Furthermore, there was no publication bias in any of the analyses. Conclusions: Our study demonstrates that BMI is negatively associated with the presence of varicocele.
DOI: 10.25582/data.2022-10.2622022/2286638
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-11.2380696/2286639
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2021-10.2353318/2286640
title: Data for EMSL Project 51834 from October 2021
DOI: 10.6084/m9.figshare.7391858
title: Additional file 1: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S1. Literature list for the collected data. (XLSX 60â kb)
DOI: 10.6084/m9.figshare.7391858.v1
title: Additional file 1: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S1. Literature list for the collected data. (XLSX 60â kb)
DOI: 10.25582/data.2021-09.2319748/2286641
title: Data for EMSL Project 51834 from September 2021
DOI: 10.6084/m9.figshare.16828963.v2
title: RR3DD: an RNA global structure-based RNA three-dimensional structural classification database

description: The three-dimensional (3D) structure of RNA usually plays an important role in the recognition with RNA-binding protein. Along with the discovering of RNAs, several RNA databases are developed to study the functions of RNA based on sequence, secondary structure, local 3D structural motif and global structure. Based on RNA function and structure, different RNAs are classified and stored in SCOR and DARTS, respectively. The classification of RNA structures is useful in RNA structure prediction and function annotation. However, the SCOR and DARTS are not updated any more. In this study, we present an RNA classification database RR3DD based on RNA fold with the global 3D structural similarity. The RR3DD includes 13,601 RNA chains from PDB and mmCIF format structures which are classified into 780 RNA folds. The RNA chains from PDB and mmCIF format structures are aligned and clustered into 675 and 220 RNA folds, respectively. By analysing the RNA structure in RR3DD, we find that there are 11 clusters with more than 50 members. These clusters include rRNAs, riboswitches, tRNAs and so on. By mapping RR3DD into Rfam, we found that some RNAs without annotation by Rfam can be annotated through structural alignment. For example, we analysed tRNAs and found that tRNA were successfully grouped in RR3DD for which Rfam did not classify them into one family. Finally, we provide a web interface of RR3DD offering functions of browsing RR3DD, annotating RNA 3D structure and finding templates for RNA homology modelling.
DOI: 10.25582/data.2022-10.2616426/2286642
title: Data for EMSL Project 51834 from October 2022
DOI: 10.6084/m9.figshare.14286581.v1
title: Endoclips as novel fiducial markers in trimodality bladder-preserving therapy of muscle-invasive bladder carcinoma: feasibility and patient outcomes

description: ABSTRACT Hypothesis: Endoclip can be used as fiducial marker in urology. Objective: To assess the feasibility, cost effectiveness and reliability of endoclips as novel fiducial markers in precision radiotherapy, as part of a trimodality bladder-preserving treatment (TBPT) of muscle-invasive bladder carcinoma. Materials and Methods: This retrospective study was performed at Weifang People's Hospital (Weifang, China) from January 2015 to June 2018. A total of 15 patients underwent TBPT. Endoclips were applied to healthy edges of the resected bladder wall as novel fiducial markers. Radio-sensitizing chemotherapy and routine precision radiotherapy were given. The number and position of the endoclips during radiotherapy sessions were monitored. Complications and tumor recurrence were analyzed. Results: The mean age (±standard deviation) of the patients was 67±10 years (range 46-79). There were 3 females and 12 males. Forty-nine endoclips were applied in all patients (3.3±0.8). The tumor was completely visibly resected in all patients. The number of endoclips remained the same through the planned last radiotherapy session (3.3±0.8), i.e., none were lost. All endoclips were removed after the last radiotherapy session. The average number of follow-up months was 38.9±13.2 (range 11-52). There were no procedure-related complications at discharge or follow-up. At one-year, overall recurrence-free survival was 93.3%. Two patients had recurrences at 18 months and 10 months after TBPT, respectively, and salvage radical cystectomy was performed with no further recurrences. Another patient died due to metastasis 9 months after the completion of therapy. Conclusions: Endoclips are reliable, safe and cost-effective as novel fiducial markers in precision-radiotherapy post-TBPT.
DOI: 10.6084/m9.figshare.25158050.v1
title: Supplementary Material for: Associations between Sleep Disorders and Impulsive-Compulsive Behaviors in Parkinson's Disease: A Prospective Cohort Study

description: Objective: To examine the associations of excessive daytime sleepiness (EDS) and probable rapid eye movement sleep behavior disorder (pRBD), respectively, with impulsive-compulsive behaviors (ICB) over a 5-year follow-up in patients with early Parkinson’s disease (PD). 
Methods: The Parkinson's Progression Markers Initiative is a multicenter cohort study based on an ongoing and open-ended registry. Longitudinal associations of sleep disorders with ICB over 5-year follow-up visits were estimated using generalized linear mixed-effects models among PD participants. 
Results: A total of 825 PD participants were enrolled at baseline. The study sample had a median baseline age of 63.1 (interquartile range [IQR]: 55.6-69.3) years and comprised 496 (61.5%) men. Among them, 201 (24.9%) had ICB at baseline. In the generalized mixed-effects models, EDS (odds ratio [OR] =1.09, 95% confidence interval [CI] 1.05, 1.12) and RBD (OR=1.07, 95% CI 1.03, 1.12) were substantially associated with higher odds of developing ICB over time in PD patients, after multivariate adjustment including age, gender, family history, GDS score, STAI-Y score, MDS-UPDRS part III score, LEDD, and disease duration. Consistent results were observed when stratifying by age at baseline, gender, and PD family history. 
Conclusions: The study findings suggest a longitudinal association between EDS and pRBD with an increased risk of developing ICB in patients with Parkinson’s disease. The findings emphasize the significance of evaluating and addressing sleep disorders in PD patients as a potential approach to managing ICB.
DOI: 10.6084/m9.figshare.7391870.v1
title: Additional file 2: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S2. The collection of protein complexes and their sources. (XLSX 38â kb)
DOI: 10.25582/data.2022-10.2613910/2286643
title: Data for EMSL Project 51834 from October 2022
DOI: 10.6084/m9.figshare.16828963
title: RR3DD: an RNA global structure-based RNA three-dimensional structural classification database

description: The three-dimensional (3D) structure of RNA usually plays an important role in the recognition with RNA-binding protein. Along with the discovering of RNAs, several RNA databases are developed to study the functions of RNA based on sequence, secondary structure, local 3D structural motif and global structure. Based on RNA function and structure, different RNAs are classified and stored in SCOR and DARTS, respectively. The classification of RNA structures is useful in RNA structure prediction and function annotation. However, the SCOR and DARTS are not updated any more. In this study, we present an RNA classification database RR3DD based on RNA fold with the global 3D structural similarity. The RR3DD includes 13,601 RNA chains from PDB and mmCIF format structures which are classified into 780 RNA folds. The RNA chains from PDB and mmCIF format structures are aligned and clustered into 675 and 220 RNA folds, respectively. By analysing the RNA structure in RR3DD, we find that there are 11 clusters with more than 50 members. These clusters include rRNAs, riboswitches, tRNAs and so on. By mapping RR3DD into Rfam, we found that some RNAs without annotation by Rfam can be annotated through structural alignment. For example, we analysed tRNAs and found that tRNA were successfully grouped in RR3DD for which Rfam did not classify them into one family. Finally, we provide a web interface of RR3DD offering functions of browsing RR3DD, annotating RNA 3D structure and finding templates for RNA homology modelling.
DOI: 10.25582/data.2021-08.2305245/2286644
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.7391972
title: Additional file 4: of Chi-miR-3031 regulates beta-casein via the PI3K/AKT-mTOR signaling pathway in goat mammary epithelial cells (GMECs)

description: Table S2. Pathway annotations of differentially expressed genes. (XLSX 13 kb)
DOI: 10.25582/data.2021-08.2305291/2286645
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.7391870
title: Additional file 2: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S2. The collection of protein complexes and their sources. (XLSX 38â kb)
DOI: 10.6084/m9.figshare.7391885.v1
title: Additional file 3: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S3. Distribution of mutation types. (XLSX 10â kb)
DOI: 10.25582/data.2022-04.2479137/2286646
title: Data for EMSL Project 51834 from April 2022
DOI: 10.34740/kaggle/dsv/7574373
title: 2024 Amazon Best Sellers: Top Valentine Gifts 🎯💘
DOI: 10.25582/data.2021-09.2329638/2286647
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-12.2390395/2286648
title: Data for EMSL Project 51834 from December 2021
DOI: 10.6084/m9.figshare.7391885
title: Additional file 3: of dbMPIKT: a database of kinetic and thermodynamic mutant protein interactions

description: Table S3. Distribution of mutation types. (XLSX 10â kb)
DOI: 10.25582/data.2021-12.2404772/2286649
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-08.2304752/2286650
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.14205531.v1
title: Additional file 2 of Transcriptomic, proteomic, and physiological comparative analyses of flooding mitigation of the damage induced by low-temperature stress in direct seeded early indica rice at the seedling stage

description: Additional file 2 : Dataset S2. Summaries and expression patterns of DEPs between LTF and CK.
DOI: 10.25582/data.2021-10.2363690/2286651
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2022-10.2621372/2286652
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-09.2322372/2286653
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-10.2621180/2286654
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-11.2380413/2286655
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-04.2479124/2286656
title: Data for EMSL Project 51834 from April 2022
DOI: 10.25582/data.2021-11.2376313/2286657
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-01.2417483/2286658
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2021-10.2369884/2286659
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2022-01.2417141/2286660
title: Data for EMSL Project 51834 from January 2022
DOI: 10.25582/data.2022-10.2617194/2286661
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-10.2363332/2286662
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2021-12.2404762/2286663
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-10.2617895/2286664
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-09.2327430/2286665
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-10.2352021/2286666
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2021-09.2318865/2286667
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2329134/2286668
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-09.2609848/2286669
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-08.2305283/2286670
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2021-09.2322442/2286671
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-12.2390393/2286672
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-09.2607880/2286673
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-10.2616259/2286674
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-09.2317882/2286675
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-11.2387409/2286676
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-09.2606272/2286677
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-09.2327941/2286678
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-10.2617994/2286679
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2021-12.2390614/2286680
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-08.2305241/2286681
title: Data for EMSL Project 51834 from August 2021
DOI: 10.25582/data.2021-12.2398163/2286682
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-12.2404881/2286683
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2021-11.2380751/2286684
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2021-12.2399887/2286685
title: Data for EMSL Project 51834 from December 2021
DOI: 10.25582/data.2022-09.2606326/2286686
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2022-09.2610434/2286687
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-11.2376282/2286688
title: Data for EMSL Project 51834 from November 2021
DOI: 10.25582/data.2022-09.2609424/2286689
title: Data for EMSL Project 51834 from September 2022
DOI: 10.25582/data.2021-10.2361856/2286690
title: Data for EMSL Project 51834 from October 2021
DOI: 10.25582/data.2021-09.2322816/2286691
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-09.2322596/2286692
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2022-10.2621772/2286693
title: Data for EMSL Project 51834 from October 2022
DOI: 10.25582/data.2022-04.2483773/2286694
title: Data for EMSL Project 51834 from April 2022
DOI: 10.25582/data.2021-11.2380752/2286695
title: Data for EMSL Project 51834 from November 2021
DOI: 10.6084/m9.figshare.25158095
title: Data Collection for Rural-Urban Disparities in Anemia Level among Pregnant Women in Nigeria: Findings from NDHS 2018

description: The concentration of hemoglobin in pregnant women plays a pivotal role in ensuring the well-being of both the mother and the fetus. Hemoglobin, a globular protein found in red blood cells, exhibits reversible binding with oxygen and carbon dioxide, facilitating the exchange of gases between the lungs and body tissues. Comprising four protein units, each hemoglobin molecule features a heme group with an iron atom at its core, forming an oxyhemoglobin complex when binding with oxygen in the lungs. In all living organisms, iron is an indispensable mineral crucial for DNA synthesis, cellular respiration, energy production, and oxygen transportation. Throughout pregnancy, the demand for oxygen intensifies due to fetal growth and hormonal changes in the mother's body system. This underscores the critical role of maintaining optimal hemoglobin levels to support the increased oxygen requirements during this dynamic physiological state. This data collection is for an ongoing study on the assessment of anemia level among pregnant women in Nigeria
DOI: 10.6084/m9.figshare.25158095.v1
title: Data Collection for Rural-Urban Disparities in Anemia Level among Pregnant Women in Nigeria: Findings from NDHS 2018

description: The concentration of hemoglobin in pregnant women plays a pivotal role in ensuring the well-being of both the mother and the fetus. Hemoglobin, a globular protein found in red blood cells, exhibits reversible binding with oxygen and carbon dioxide, facilitating the exchange of gases between the lungs and body tissues. Comprising four protein units, each hemoglobin molecule features a heme group with an iron atom at its core, forming an oxyhemoglobin complex when binding with oxygen in the lungs. In all living organisms, iron is an indispensable mineral crucial for DNA synthesis, cellular respiration, energy production, and oxygen transportation. Throughout pregnancy, the demand for oxygen intensifies due to fetal growth and hormonal changes in the mother's body system. This underscores the critical role of maintaining optimal hemoglobin levels to support the increased oxygen requirements during this dynamic physiological state. This data collection is for an ongoing study on the assessment of anemia level among pregnant women in Nigeria
DOI: 10.25582/data.2021-08.2305286/2286696
title: Data for EMSL Project 51834 from August 2021
DOI: 10.6084/m9.figshare.14286581
title: Endoclips as novel fiducial markers in trimodality bladder-preserving therapy of muscle-invasive bladder carcinoma: feasibility and patient outcomes

description: ABSTRACT Hypothesis: Endoclip can be used as fiducial marker in urology. Objective: To assess the feasibility, cost effectiveness and reliability of endoclips as novel fiducial markers in precision radiotherapy, as part of a trimodality bladder-preserving treatment (TBPT) of muscle-invasive bladder carcinoma. Materials and Methods: This retrospective study was performed at Weifang People's Hospital (Weifang, China) from January 2015 to June 2018. A total of 15 patients underwent TBPT. Endoclips were applied to healthy edges of the resected bladder wall as novel fiducial markers. Radio-sensitizing chemotherapy and routine precision radiotherapy were given. The number and position of the endoclips during radiotherapy sessions were monitored. Complications and tumor recurrence were analyzed. Results: The mean age (±standard deviation) of the patients was 67±10 years (range 46-79). There were 3 females and 12 males. Forty-nine endoclips were applied in all patients (3.3±0.8). The tumor was completely visibly resected in all patients. The number of endoclips remained the same through the planned last radiotherapy session (3.3±0.8), i.e., none were lost. All endoclips were removed after the last radiotherapy session. The average number of follow-up months was 38.9±13.2 (range 11-52). There were no procedure-related complications at discharge or follow-up. At one-year, overall recurrence-free survival was 93.3%. Two patients had recurrences at 18 months and 10 months after TBPT, respectively, and salvage radical cystectomy was performed with no further recurrences. Another patient died due to metastasis 9 months after the completion of therapy. Conclusions: Endoclips are reliable, safe and cost-effective as novel fiducial markers in precision-radiotherapy post-TBPT.
DOI: 10.6084/m9.figshare.7916261
title: Supporting Information Tables from Dynamical modelling of secondary metabolism and metabolic switches in <i>Streptomyces xiamenensis</i> 318.

description: The modeling results are shown in the supporting tables.
DOI: 10.25582/data.2022-01.2417058/2286697
title: Data for EMSL Project 51834 from January 2022
DOI: 10.6084/m9.figshare.7916261.v1
title: Supporting Information Tables from Dynamical modelling of secondary metabolism and metabolic switches in <i>Streptomyces xiamenensis</i> 318

description: The modeling results are shown in the supporting tables.
DOI: 10.6084/m9.figshare.16828963.v1
title: RR3DD: an RNA global structure-based RNA three-dimensional structural classification database

description: The three-dimensional (3D) structure of RNA usually plays an important role in the recognition with RNA-binding protein. Along with the discovering of RNAs, several RNA databases are developed to study the functions of RNA based on sequence, secondary structure, local 3D structural motif and global structure. Based on RNA function and structure, different RNAs are classified and stored in SCOR and DARTS, respectively. The classification of RNA structures is useful in RNA structure prediction and function annotation. However, the SCOR and DARTS are not updated any more. In this study, we present an RNA classification database RR3DD based on RNA fold with the global 3D structural similarity. The RR3DD includes 13,601 RNA chains from PDB and mmCIF format structures which are classified into 780 RNA folds. The RNA chains from PDB and mmCIF format structures are aligned and clustered into 675 and 220 RNA folds, respectively. By analysing the RNA structure in RR3DD, we find that there are 11 clusters with more than 50 members. These clusters include rRNAs, riboswitches, tRNAs and so on. By mapping RR3DD into Rfam, we found that some RNAs without annotation by Rfam can be annotated through structural alignment. For example, we analysed tRNAs and found that tRNA were successfully grouped in RR3DD for which Rfam did not classify them into one family. Finally, we provide a web interface of RR3DD offering functions of browsing RR3DD, annotating RNA 3D structure and finding templates for RNA homology modelling.
DOI: 10.6084/m9.figshare.7916261.v2
title: Supporting Information Tables from Dynamical modelling of secondary metabolism and metabolic switches in <i>Streptomyces xiamenensis</i> 318.

description: The modeling results are shown in the supporting tables.
DOI: 10.25582/data.2021-09.2327581/2286698
title: Data for EMSL Project 51834 from September 2021
DOI: 10.25582/data.2021-07.2289520/2286699
title: Data for EMSL Project 51834 from July 2021
DOI: 10.25582/data.2021-12.2389765/2286700
title: Data for EMSL Project 51834 from December 2021