cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12465977
title: Profiles_Turbulence_metrics_numerical_values from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12469052.v2
title: 2011-2015 American Community Survey data from NHGIS

description: These are the raw data used in the paper ""Comparison of two neighborhood-level socioeconomic indices in the United States" by Boscoe and Li currently in preparation, as downloaded from NHGIS, along with the data dictionary. The data consist of the 7 American Community Survey variables used to construct the Yost Index at the block group level for the period 2011-2015.<br>
DOI: 10.6084/m9.figshare.12465974
title: Profiles_Turbulence_metrics_Readme from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12465992.v1
title: Supplementary files for JCEM manuscript under review

description: Supplementary files for JCEM manuscript under review
DOI: 10.6084/m9.figshare.12469052.v3
title: 2011-2015 American Community Survey data from NHGIS

description: These are the raw data used in the paper "Comparison of two neighborhood-level socioeconomic indices in the United States" by Boscoe and Li currently in preparation, as downloaded from NHGIS, along with the data dictionary. The data consist of the 7 American Community Survey variables used to construct the Yost Index at the block group level for the period 2011-2015.<br>
DOI: 10.6084/m9.figshare.12465992.v2
title: Supplementary files for JCEM manuscript jc.2020-01659

description: Supplementary files for JCEM manuscript jc.2020-01659
DOI: 10.6084/m9.figshare.12465974.v2
title: Profiles_Turbulence_metrics_Readme from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12465977.v2
title: Profiles_Turbulence_metrics_numerical_values from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12465977.v1
title: Profiles_Turbulence_metrics_numerical_values from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines. 23 April 2020

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12465974.v1
title: Profiles_Turbulence_metrics_Readme from Characterization of the vertical evolution of the three-dimensional turbulence for fatigue design of tidal turbines. 23 April 2020

description: A system of two coupled four-beam acoustic Doppler current profilers was used to collect turbulence measurements over a 36-h period at a highly energetic tidal energy site in Alderney Race. This system enables the evaluation of the six components of the Reynolds stress tensor throughout a large proportion of the water column. The present study provides mean vertical profiles of the velocity, the turbulence intensity and the integral lengthscale along the streamwise, spanwise and vertical direction of the tidal current. Based on our results and considering a tidal-stream energy convertor (TEC) aligned with the current main direction, the main elements of turbulence prone to affect the structure (material fatigue) and to alter power generation would likely be: (i) the streamwise turbulence intensity (I<sub>x</sub>), (ii) the shear stress, <i>v</i>′<i>w</i>′, (iii) the normal stress, <i>u</i>′<sup>2</sup> and (iv) the vertical integral lengthscale (L<sub>z</sub>). The streamwise turbulence intensity, (I<sub>x</sub>), was found to be higher than that estimated at other tidal energy sites across the world for similar height above bottom. Along the vertical direction, the length (L<sub>z</sub>) of the large-scale turbulence eddies was found to be equivalent to the rotor diameter of the TEC Sabella D10. It is considered that the turbulence metrics presented in this paper will be valuable for TECs designers, helping them optimize their designs as well as improve loading prediction through the lifetime of the machines.This article is part of the theme issue ‘New insights on tidal dynamics and tidal energy harvesting in the Alderney Race’.
DOI: 10.6084/m9.figshare.12465992.v3
title: Supplementary files for JCEM manuscript jc.2020-01659

description: Supplementary files for JCEM manuscript jc.2020-01659
DOI: 10.6084/m9.figshare.12465863
title: Antibiotic sensitivity data of the bacterial strain CC4533 (Sphingobium yanoikuyae strain PR86 variant; GenBank Accession number: MN633285.1) and Chlamydomonas reinhardtii strain 4A+.

description: CC4533 Data S1 contain information about means of the zones of inhibitions of the bacterial strain CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) and <i>Chlamydomonas</i> and corresponding standard deviations. CC4533 Data S2 file contains information on statistical analyses of the zones of inhibitions of the bacterial strain CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) and <i>Chlamydomonas</i>, induced by four antibiotics. Antibiotics used are: penicillin, chloramphenicol, neomycin and polymyxin B. Three biological replicates were used for the generation of the data. Two different doses of antibiotics were used: 50 and 100 micrograms of each antibiotics. Data was collected for CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) after 3 days of growth at room temperature. Data was collected for <i>Chlamydomonas</i> after 4 days of growth at room temperature (22C).
DOI: 10.6084/m9.figshare.12465839
title: Percent_diffs_codon_usage_spike_non_spike.csv

description: %Differences between SARS-CoV-2 references sequence genes and publicly available sequences.<br>
DOI: 10.6084/m9.figshare.12465845
title: Supplementary Material Paper I and III - Thesis July 2020 - Lino Cesar Ramirez Ayala.zip

description: <b>Paper I</b><b>Table S2.</b> Description of the intervals identified as selective sweeps between Cuban and French Charolais.<br><b>Table S3.</b> Putative regulatory SNPs (rSNPs) located upstream of <i>UCP1</i> gene.<br><br><b>Paper III</b><b>Table S1.</b> QTL regions for each of these three sets of phenotypes from the QTL database.<b><br></b>
DOI: 10.6084/m9.figshare.12465830
title: Metadata record for: A new climate data record of upper-tropospheric humidity from microwave observations

description: This dataset contains key characteristics about the data described in the Data Descriptor A new climate data record of upper-tropospheric humidity from microwave observations. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12465833
title: The influence of footwear on walking biomechanics in individuals with chronic ankle instability

description: Data normalized to 100% of the stance phase. Each line represents data from a different participants.CW=Comfortable walkingFW=Fast walkingBF=Barefoot
DOI: 10.6084/m9.figshare.12465839.v1
title: Percent_diffs_codon_usage_spike_non_spike.csv

description: %Differences between SARS-CoV-2 references sequence genes and publicly available sequences.<br>
DOI: 10.6084/m9.figshare.12465845.v1
title: Supplementary Material Paper I and III - Thesis July 2020 - Lino Cesar Ramirez Ayala.zip

description: <b>Paper I</b><b>Table S2.</b> Description of the intervals identified as selective sweeps between Cuban and French Charolais.<br><b>Table S3.</b> Putative regulatory SNPs (rSNPs) located upstream of <i>UCP1</i> gene.<br><br><b>Paper III</b><b>Table S1.</b> QTL regions for each of these three sets of phenotypes from the QTL database.<b><br></b>
DOI: 10.6084/m9.figshare.12465830.v1
title: Metadata record for: A new climate data record of upper-tropospheric humidity from microwave observations

description: This dataset contains key characteristics about the data described in the Data Descriptor A new climate data record of upper-tropospheric humidity from microwave observations. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12465863.v1
title: Antibiotic sensitivity data of the bacterial strain CC4533 (Sphingobium yanoikuyae strain PR86 variant; GenBank Accession number: MN633285.1) and Chlamydomonas reinhardtii strain 4A+.

description: CC4533 Data S1 contain information about means of the zones of inhibitions of the bacterial strain CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) and <i>Chlamydomonas</i> and corresponding standard deviations. CC4533 Data S2 file contains information on statistical analyses of the zones of inhibitions of the bacterial strain CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) and <i>Chlamydomonas</i>, induced by four antibiotics. Antibiotics used are: penicillin, chloramphenicol, neomycin and polymyxin B. Three biological replicates were used for the generation of the data. Two different doses of antibiotics were used: 50 and 100 micrograms of each antibiotics. Data was collected for CC4533 (<i>Sphingobium yanoikuyae</i> strain PR86 variant) after 3 days of growth at room temperature. Data was collected for <i>Chlamydomonas</i> after 4 days of growth at room temperature (22C).
DOI: 10.6084/m9.figshare.12465827.v2
title: "Energetic Electron Precipitation Observed by FIREBIRD-II Driven by EMIC waves: Location, Extent, and Minimum Energy from a Multi-Event Analysis"

description: GEANT 4 fluxes for the multi-event analysis. The fluxes, at first approximation, are also available at the website http://solar.physics.montana.edu/FIREBIRD_II/.
DOI: 10.6084/m9.figshare.12465827.v1
title: GEANT_fluxes_multievent.zip

description: GEANT 4 fluxes for the multi-event analysis. The fluxes, at first approximation, are also available at the website http://solar.physics.montana.edu/FIREBIRD_II/.
DOI: 10.6084/m9.figshare.12465665
title: Molecular dynamics simulation of the heart type fatty acid binding protein in a crystal environment

description: Crystallographic data comes from a space-time average over all the unit cells within the crystal, so dynamic phenomena do not contribute significantly to the diffraction data. Many efforts have been made to reconstitute the movement of the macromolecules and explore the microstates that the confined proteins can adopt in the crystalline network. We explored different strategies to simulate a heart fatty acid binding protein (H-FABP) crystal by means of Molecular Dynamics (MD) simulations. We evaluate the effect of introducing restraints according to experimental isotropic B-factors and we analyzed the H-FABP motions in the crystal using Principal Component Analysis (PCA), isotropic and anisotropic B-factors. We compared the behavior of the protein simulated in the crystal confinement versus in solution, and we observed the effect of that confinement in the mobility of the protein residues. Restraining one-third of <i>Cα</i> atoms based on experimental B-factors produce lower B-factors than simulations without restraints, showing that the position restraint of the atoms with the lowest experimental B-factor is a good strategy to maintain the geometry of the crystal with an obvious decrease in the degrees of motion of the protein. PCA shows that, as position restraint reduces the conformational space explored by the system, the motion of the crystal is better recovered, for an essential subspace of the same size, in the simulations without restraints. Restraining only one <i>Cα</i> seems to be a good balance between giving flexibility to the system and preserving its structure. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12465665.v1
title: Molecular dynamics simulation of the heart type fatty acid binding protein in a crystal environment

description: Crystallographic data comes from a space-time average over all the unit cells within the crystal, so dynamic phenomena do not contribute significantly to the diffraction data. Many efforts have been made to reconstitute the movement of the macromolecules and explore the microstates that the confined proteins can adopt in the crystalline network. We explored different strategies to simulate a heart fatty acid binding protein (H-FABP) crystal by means of Molecular Dynamics (MD) simulations. We evaluate the effect of introducing restraints according to experimental isotropic B-factors and we analyzed the H-FABP motions in the crystal using Principal Component Analysis (PCA), isotropic and anisotropic B-factors. We compared the behavior of the protein simulated in the crystal confinement versus in solution, and we observed the effect of that confinement in the mobility of the protein residues. Restraining one-third of <i>Cα</i> atoms based on experimental B-factors produce lower B-factors than simulations without restraints, showing that the position restraint of the atoms with the lowest experimental B-factor is a good strategy to maintain the geometry of the crystal with an obvious decrease in the degrees of motion of the protein. PCA shows that, as position restraint reduces the conformational space explored by the system, the motion of the crystal is better recovered, for an essential subspace of the same size, in the simulations without restraints. Restraining only one <i>Cα</i> seems to be a good balance between giving flexibility to the system and preserving its structure. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.12465473
title: N-deacetylation in lincosamide biosynthesis is catalyzed by a TldD PmbA family protein - MaxQuant data.rar

description: MaxQuant data from proteomics analysis
DOI: 10.6084/m9.figshare.12465473.v1
title: N-deacetylation in lincosamide biosynthesis is catalyzed by a TldD PmbA family protein - MaxQuant data.rar

description: MaxQuant data from proteomics analysis
DOI: 10.6084/m9.figshare.12465266
title: Supplemental Tables.pdf

description: Supplementary tables for "Postprandial metabolic response to rapeseed protein in healthy subjects"
DOI: 10.6084/m9.figshare.12465311
title: OMVs- Dietzia sp. DQ12-45-1b.xlsx

description: Protein profiles of outer membrane vesicles from Dietzia sp. DQ12-45-1b, from iron-limiting and iron-rich conditons
DOI: 10.6084/m9.figshare.12465383
title: COVID19 datasets to examine diffusion patterns

description: The datasets and codes are used to examine both the diffusion patterns of COVID-19 and the patterns of information cascades on Twitter about the virus.The dataset with tweet-ids include tweets about COVID-19 from January 1 to March 14, 2020. The hashtags used are: #coronavirus, #covid19, #ncov. These hashtags are the top three hashtags used for COVID19-related discussions during the data collection period. <br>For more information about the datasets and analytic pipeline, please refer to &lt;&gt;.
DOI: 10.6084/m9.figshare.12465254
title: GO enrichment analysis

description: We present enrichment analysis for a set of comparison done for genome and transcriptome analysis of Thalictrum
DOI: 10.6084/m9.figshare.12465311.v1
title: OMVs- Dietzia sp. DQ12-45-1b.xlsx

description: Protein profiles of outer membrane vesicles from Dietzia sp. DQ12-45-1b, from iron-limiting and iron-rich conditons