cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4793763
title: Replication Archive for "Parental Disability and Teenagers' Time Allocation"

description: This archive includes the STATA code to replicate all results in the referenced paper.
DOI: 10.6084/m9.figshare.18043667
title: Quarter Horse Movement Symmetry Data

description: Data sets comprising:1) baseline movement symmetry data of N=30 Quarter horses. Baseline data are from straight-line, in0hand trotups on reining purpose arena surface and from left and right rein lunge exercise on the same surface..2) normalized movement symmetry data from in-hand, lunge and ridden exercise of the same N=30 horses for which baseline symmetry data are available. Movement symmetry data are normalized (for each parameter separately) so that a) a positive value for movement symmetry is observed for straight-line, in-hand exercise and b) left and right reins are recategorized with respect to the direction of asymmetry seen during the baseline, straight-line, in-hand exercise, such that an 'inside rein' is when the horse is trotting with the limb on the inside of the circle and the corresponding asymmetry parameter indicates a reduction in force production during the stance phase of said limb during the baseline trot.Movement symmetry parameters are:in mmHDmin, HDmax, HDup for vertical head movementWDmin, WDmax, WDup for vertical withers movementPDmin, PDmax, PDup for vertical mid-pelvic movement.Parameters labelled 'min' indicate the differences between the two minima in vertical movement over a stride cycle.Labelled with 'max': differences between the maxima.Labelled with 'up': differences between the upward movement amplitudes.Sign convention before normalization: asymmetries indicating a reduction in force with the left limb have negative values, indicating a reduction in force with the right limb have positive values.Data are labelled with respect to the horse (ID), the Gait (trot), the Surface (Soft), whether the values was taken during in-hand or ridden exercise, the rein (either straight, left, right or straight, inside, outside), the numbers of strides averaged to calculate the value (N), the average stride time (in ms).
DOI: 10.6084/m9.figshare.18043667.v1
title: Quarter Horse Movement Symmetry Data

description: Data sets comprising:1) baseline movement symmetry data of N=30 Quarter horses. Baseline data are from straight-line, in0hand trotups on reining purpose arena surface and from left and right rein lunge exercise on the same surface..2) normalized movement symmetry data from in-hand, lunge and ridden exercise of the same N=30 horses for which baseline symmetry data are available. Movement symmetry data are normalized (for each parameter separately) so that a) a positive value for movement symmetry is observed for straight-line, in-hand exercise and b) left and right reins are recategorized with respect to the direction of asymmetry seen during the baseline, straight-line, in-hand exercise, such that an 'inside rein' is when the horse is trotting with the limb on the inside of the circle and the corresponding asymmetry parameter indicates a reduction in force production during the stance phase of said limb during the baseline trot.Movement symmetry parameters are:in mmHDmin, HDmax, HDup for vertical head movementWDmin, WDmax, WDup for vertical withers movementPDmin, PDmax, PDup for vertical mid-pelvic movement.Parameters labelled 'min' indicate the differences between the two minima in vertical movement over a stride cycle.Labelled with 'max': differences between the maxima.Labelled with 'up': differences between the upward movement amplitudes.Sign convention before normalization: asymmetries indicating a reduction in force with the left limb have negative values, indicating a reduction in force with the right limb have positive values.Data are labelled with respect to the horse (ID), the Gait (trot), the Surface (Soft), whether the values was taken during in-hand or ridden exercise, the rein (either straight, left, right or straight, inside, outside), the numbers of strides averaged to calculate the value (N), the average stride time (in ms).
DOI: 10.5281/zenodo.5519721
title: Simulation files to accompany the manuscript "Two-dimensional basin-scale seismic site effects in the Kitimat Valley, British Columbia, Canada: A practical example of using a fast hybrid FE/BE method"

description: Simulation files to accompany the two-dimensional basin-scale seismic site effects investigation in the Kitimat valley, located in the northern coastal region of British Columbia, Canada.
DOI: 10.6084/m9.figshare.16646020.v3
title: Network: czo, Domain: boulder

description: MacroSheds timeseries data, shapefiles, and metadata for domain: boulder, within network: czo
DOI: 10.6073/pasta/2c1651467e85be4e60a7909612ad606f
title: Surface Water Quality Monitoring Data collected in South Florida Coastal Waters (FCE LTER), Florida, USA, June 1989-ongoing

description: The Southeast Environmental Research Center at Florida International University operates a network of 331 fixed sampling sites distributed throughout the estuarine and coastal ecosystems of south Florida. The purpose of this network is to address concerns in regional water quality which cross and overlap separate political boundaries. Funding has come from different sources with individual programs being added as funding became available. Biscayne Bay, Florida Bay, Whitewater Bay, Ten Thousand Islands, Rookery Bay, Estero Bay, andPine Island Sound are sampled monthly while the Florida Keys National Marine Sanctuary (FKNMS) and the southwest shelf are sampled quarterly. Variables currently being measured include surface and bottom temperature, salinity, dissolved oxygen, nitrate, nitrite, ammonium, total nitrogen, total organic nitrogen, total phosphorus, soluble reactive phosphorus, total organic carbon, total silicate, chlorophyll a, alkaline phosphatase activity, turbidity, and light extinction. The purpose of this network is to address concerns in regional water quality which cross and overlap separate political boundaries. One of the products is a quasi-synoptic big picture of nutrient and phytoplankton biomass distributions over the South Florida Coastal Waters. The SERC network will, in time, provide us with the data necessary to determine whether conditions within the estuaries and sanctuary are improving or declining.
DOI: 10.6073/pasta/49adea692415666d289eac906be41b57
title: Surface Water Quality Monitoring Data collected in South Florida Coastal Waters (FCE LTER), Florida, USA, June 1989-ongoing

description: The Southeast Environmental Research Center at Florida International University operates a network of 331 fixed sampling sites distributed throughout the estuarine and coastal ecosystems of south Florida. The purpose of this network is to address concerns in regional water quality which cross and overlap separate political boundaries. Funding has come from different sources with individual programs being added as funding became available. Biscayne Bay, Florida Bay, Whitewater Bay, Ten Thousand Islands, Rookery Bay, Estero Bay, andPine Island Sound are sampled monthly while the Florida Keys National Marine Sanctuary (FKNMS) and the southwest shelf are sampled quarterly. Variables currently being measured include surface and bottom temperature, salinity, dissolved oxygen, nitrate, nitrite, ammonium, total nitrogen, total organic nitrogen, total phosphorus, soluble reactive phosphorus, total organic carbon, total silicate, chlorophyll a, alkaline phosphatase activity, turbidity, and light extinction. The purpose of this network is to address concerns in regional water quality which cross and overlap separate political boundaries. One of the products is a quasi-synoptic big picture of nutrient and phytoplankton biomass distributions over the South Florida Coastal Waters. The SERC network will, in time, provide us with the data necessary to determine whether conditions within the estuaries and sanctuary are improving or declining.
DOI: 10.25919/x2w6-wn62
title: Parkes observations for project P1050 semester 2021OCTS_26

description: This is a request for observing time for the timing campaign of new pulsar discoveries from the reprocessing of the low-latitude Galactic plane section of the HTRU survey (P630). We have now completed 90 % of the survey with GPU based coherent acceleration search, template bank and fast folding algorithm pipelines, and now have discovered 92 previously unknown pulsars and 8 "class A" pulsars awaiting confirmation. Interesting science can usually only be derived from a new pulsar after confirmation and a follow-up timing campaign is carried out. One year of initial timing is the minimum timespan required to fully characterise any newly-discovered pulsars, essential for deriving pulsar parameters such as the characteristic age, magnetic field strength, spin-down rate, as well as to detect any unexpected behaviour of the pulsar which might result from emission instabilities. Pulsars on the observing list here have been confirmed in the previous and current 2021APRS semesters, the follow-up timing in OCTS2021 will produce completely new and exciting results. In addition, this timing project will allow us to measure the true Galactic plane pulsar population and the boundaries of pulsar parameter space in the galactic plane.
DOI: 10.6084/m9.figshare.17131491
title: Evolutionary patterns of host type and chasmothecial appendage morphology in obligate plant parasites belonging to Cystotheceae (powdery mildew, Erysiphaceae)

description: The chasmothecial appendages of Erysiphaceae are considered to function in the overwintering strategy and evolve morphologically in line with transitions of different host type. However, the evolutionary patterns and relationships of these traits have not yet been verified using statistical models based on phylogenetic information. We aimed to clarify the evolutionary process of host type and appendage morphology in Cystotheceae using phylogenetic comparative methods (PCMs) and to evaluate the evolutionary relationship of these traits. The ancestral state estimation of host types showed that the deciduous type is the most ancestral in Cystotheceae, and the herb or evergreen types evolved secondarily four times and twice, respectively. Branched- or circinate-type appendages were estimated to be the most ancestral, and the mycelioid and rudimentary types evolved secondarily thrice and once, respectively. The results of the random forest analysis showed that the host type was predictable from the phylogeny and appendage morphology. The ancestral state estimation suggested that simultaneous transitions of the host type and appendage morphology occurred at several ancestral nodes. These results suggest some functional relationships between host type and appendage morphology, but there was no statistical support for an overall trend in evolutionary dependence between these traits. Our results demonstrate the utility of PCMs in the study of trait evolution in Cystotheceae, which can be applied to a broader phylogeny of powdery mildews to elucidate the evolutionary relationship and functional causality of phenotypic traits.
DOI: 10.6084/m9.figshare.17131491.v1
title: Evolutionary patterns of host type and chasmothecial appendage morphology in obligate plant parasites belonging to Cystotheceae (powdery mildew, Erysiphaceae)

description: The chasmothecial appendages of Erysiphaceae are considered to function in the overwintering strategy and evolve morphologically in line with transitions of different host type. However, the evolutionary patterns and relationships of these traits have not yet been verified using statistical models based on phylogenetic information. We aimed to clarify the evolutionary process of host type and appendage morphology in Cystotheceae using phylogenetic comparative methods (PCMs) and to evaluate the evolutionary relationship of these traits. The ancestral state estimation of host types showed that the deciduous type is the most ancestral in Cystotheceae, and the herb or evergreen types evolved secondarily four times and twice, respectively. Branched- or circinate-type appendages were estimated to be the most ancestral, and the mycelioid and rudimentary types evolved secondarily thrice and once, respectively. The results of the random forest analysis showed that the host type was predictable from the phylogeny and appendage morphology. The ancestral state estimation suggested that simultaneous transitions of the host type and appendage morphology occurred at several ancestral nodes. These results suggest some functional relationships between host type and appendage morphology, but there was no statistical support for an overall trend in evolutionary dependence between these traits. Our results demonstrate the utility of PCMs in the study of trait evolution in Cystotheceae, which can be applied to a broader phylogeny of powdery mildews to elucidate the evolutionary relationship and functional causality of phenotypic traits.
DOI: 10.6084/m9.figshare.19027332.v1
title: Wulingshen, the massive <i>Xylaria</i> sclerotia used as traditional Chinese medicine, is produced by multiple species

description: Wulingshen, massive <i>Xylaria</i> sclerotia, was originally reported from Chengdu Plain in western Sichuan of China for medicinal application. <i>Xylaria nigripes</i> is commonly connected to these massive sclerotia produced within abandoned underground macrotermitine termite nests. We sequenced 54 Wulingshen samples procured from traditional Chinese medicine markets in Chengdu Plain and connected them to six different <i>Xylaria</i> species: <i>X. nigripes, X. subescharoidea</i>, two species newly described herein—<i>X. neonigripes</i> and <i>X. rogersionigripes</i>, and two species that are known only as sclerotia thus far. Only teleomorphs of <i>X. subescharoidea</i> and <i>X. rogersionigripes</i> have been collected in Chengdu Plain thus far. In Taiwan, teleomorphs of four of the six species, except for the two only known in sclerotial form, have been collected, and their cultures were obtained; we thus designate the holotypes of <i>X. neonigripes</i> and <i>X. rogersionigripes</i> on the basis of Taiwan specimens. During the collecting activities carried out in Chengdu Plain, a <i>Xylaria</i> species, which is newly described as <i>X. mianyangensis</i> herein, was also collected from termite nests but lacks a known connection to Wulingshen.
DOI: 10.6084/m9.figshare.17033499
title: Multilocus phylogeny and taxonomy of European <i>Melanoleuca</i> subgenus <i>Melanoleuca</i>

description: Revision of the taxonomically complicated European <i>Melanoleuca</i> taxa with well-developed macrocystidia (subgenus <i>Melanoleuca</i>) is presented. The species are delimited by macro- and micromorphological characters and by multilocus molecular data based on internal transcribed spacer (ITS), second largest subunit of RNA polymerase I (<i>rpb2</i>), and translation elongation factor 1-alpha (<i>tef1</i>) genes. The study is based on both type material and recent collections. Phylogenetically, these taxa form 10 clades recognized as 11 separate species: <i>M. albomarginata, M. ammophila, M. bataillei, M. cavipes, M. friesii, M. granadensis, M. melaleuca, M. pallidicutis, M. polioleuca, M. strictipes</i>, and <i>M. variabilis</i>. Three species, <i>M. albomarginata, M. ammophila</i>, and <i>M. variabilis</i>, are described as new. <i>Melanoleuca melaleuca</i> is discussed here as the type species of the genus. Discussion of other older names and their taxonomic status is also provided.
DOI: 10.6084/m9.figshare.19027332
title: Wulingshen, the massive <i>Xylaria</i> sclerotia used as traditional Chinese medicine, is produced by multiple species

description: Wulingshen, massive <i>Xylaria</i> sclerotia, was originally reported from Chengdu Plain in western Sichuan of China for medicinal application. <i>Xylaria nigripes</i> is commonly connected to these massive sclerotia produced within abandoned underground macrotermitine termite nests. We sequenced 54 Wulingshen samples procured from traditional Chinese medicine markets in Chengdu Plain and connected them to six different <i>Xylaria</i> species: <i>X. nigripes, X. subescharoidea</i>, two species newly described herein—<i>X. neonigripes</i> and <i>X. rogersionigripes</i>, and two species that are known only as sclerotia thus far. Only teleomorphs of <i>X. subescharoidea</i> and <i>X. rogersionigripes</i> have been collected in Chengdu Plain thus far. In Taiwan, teleomorphs of four of the six species, except for the two only known in sclerotial form, have been collected, and their cultures were obtained; we thus designate the holotypes of <i>X. neonigripes</i> and <i>X. rogersionigripes</i> on the basis of Taiwan specimens. During the collecting activities carried out in Chengdu Plain, a <i>Xylaria</i> species, which is newly described as <i>X. mianyangensis</i> herein, was also collected from termite nests but lacks a known connection to Wulingshen.
DOI: 10.6084/m9.figshare.17033499.v1
title: Multilocus phylogeny and taxonomy of European <i>Melanoleuca</i> subgenus <i>Melanoleuca</i>

description: Revision of the taxonomically complicated European <i>Melanoleuca</i> taxa with well-developed macrocystidia (subgenus <i>Melanoleuca</i>) is presented. The species are delimited by macro- and micromorphological characters and by multilocus molecular data based on internal transcribed spacer (ITS), second largest subunit of RNA polymerase I (<i>rpb2</i>), and translation elongation factor 1-alpha (<i>tef1</i>) genes. The study is based on both type material and recent collections. Phylogenetically, these taxa form 10 clades recognized as 11 separate species: <i>M. albomarginata, M. ammophila, M. bataillei, M. cavipes, M. friesii, M. granadensis, M. melaleuca, M. pallidicutis, M. polioleuca, M. strictipes</i>, and <i>M. variabilis</i>. Three species, <i>M. albomarginata, M. ammophila</i>, and <i>M. variabilis</i>, are described as new. <i>Melanoleuca melaleuca</i> is discussed here as the type species of the genus. Discussion of other older names and their taxonomic status is also provided.
DOI: 10.6084/m9.figshare.17131488
title: <i>Fusarium chaquense</i>, sp. nov, a novel type A trichothecene–producing species from native grasses in a wetland ecosystem in Argentina

description: The Chaco wetland is among the most biologically diverse regions in Argentina. In collections of fungi from asymptomatic native grasses (Poaceae) from the wetlands, we identified isolates of <i>Fusarium</i> that were morphologically similar to <i>F. armeniacum</i>, but distinct from it by their production of abundant microconidia. All the isolates had identical, or nearly identical, partial sequences of <i>TEF1</i> and <i>RPB2</i>. But they were distinct from reference sequences from <i>F. armeniacum</i> and <i>Fusarium</i> species closely related to it. Phylogenetic analysis of 34 full-length housekeeping gene sequences retrieved from whole genome sequences of three Chaco wetland isolates, 29 genes resolved the isolates as an exclusive clade within the <i>F. sambucinum</i> species complex. Based on results of the morphological and phylogenetic analysis, we concluded that the Chaco wetland isolates are a distinct and novel species, herein described as <i>Fusarium chaquense</i>, sp. nov., which is closely related to <i>F. armeniacum. F. chaquense</i> in culture can produce the trichothecenes T-2 and HT-2 toxin, neosolaniol, diacetoxyscirpenol, and monoacetoxyscirpenol, as well as beauvericin and the pigment aurofusarin. Genome sequence analysis also revealed the presence of three previously described loci required for trichothecene biosynthesis. This research represents the first study of <i>Fusarium</i> in a natural ecosystem in Argentina.
DOI: 10.6084/m9.figshare.17131488.v1
title: <i>Fusarium chaquense</i>, sp. nov, a novel type A trichothecene–producing species from native grasses in a wetland ecosystem in Argentina

description: The Chaco wetland is among the most biologically diverse regions in Argentina. In collections of fungi from asymptomatic native grasses (Poaceae) from the wetlands, we identified isolates of <i>Fusarium</i> that were morphologically similar to <i>F. armeniacum</i>, but distinct from it by their production of abundant microconidia. All the isolates had identical, or nearly identical, partial sequences of <i>TEF1</i> and <i>RPB2</i>. But they were distinct from reference sequences from <i>F. armeniacum</i> and <i>Fusarium</i> species closely related to it. Phylogenetic analysis of 34 full-length housekeeping gene sequences retrieved from whole genome sequences of three Chaco wetland isolates, 29 genes resolved the isolates as an exclusive clade within the <i>F. sambucinum</i> species complex. Based on results of the morphological and phylogenetic analysis, we concluded that the Chaco wetland isolates are a distinct and novel species, herein described as <i>Fusarium chaquense</i>, sp. nov., which is closely related to <i>F. armeniacum. F. chaquense</i> in culture can produce the trichothecenes T-2 and HT-2 toxin, neosolaniol, diacetoxyscirpenol, and monoacetoxyscirpenol, as well as beauvericin and the pigment aurofusarin. Genome sequence analysis also revealed the presence of three previously described loci required for trichothecene biosynthesis. This research represents the first study of <i>Fusarium</i> in a natural ecosystem in Argentina.
DOI: 10.6084/m9.figshare.19146627
title: <i>Tricholoma alpinum</i>, sp. nov., under five-needle pines in alpine and subalpine zones in Japan

description: Alpine regions in Japan are characterized by the Siberian dwarf pine, <i>Pinus pumila</i>. Although these regions are conserved as national parks due to their unique biome, few reports of the fungal biota are available. We examined mushroom fungi under such vegetation and found a unique yellowish-capped <i>Tricholoma</i> species. Multilocus molecular phylogenetic analyses and morphological observation of specimens showed that the <i>Tricholoma</i> species is very similar to <i>T. fumosoluteum</i> known in North America. The Japanese yellowish-capped <i>T</i>. aff. <i>fumosoluteum</i> had larger basidiospores and basidia and shorter pileipellis hyphae compared with <i>T. fumosoluteum</i>. Therefore, we describe the Japanese entity as a new species, <i>T. alpinum</i>.
DOI: 10.6084/m9.figshare.19146627.v1
title: <i>Tricholoma alpinum</i>, sp. nov., under five-needle pines in alpine and subalpine zones in Japan

description: Alpine regions in Japan are characterized by the Siberian dwarf pine, <i>Pinus pumila</i>. Although these regions are conserved as national parks due to their unique biome, few reports of the fungal biota are available. We examined mushroom fungi under such vegetation and found a unique yellowish-capped <i>Tricholoma</i> species. Multilocus molecular phylogenetic analyses and morphological observation of specimens showed that the <i>Tricholoma</i> species is very similar to <i>T. fumosoluteum</i> known in North America. The Japanese yellowish-capped <i>T</i>. aff. <i>fumosoluteum</i> had larger basidiospores and basidia and shorter pileipellis hyphae compared with <i>T. fumosoluteum</i>. Therefore, we describe the Japanese entity as a new species, <i>T. alpinum</i>.
DOI: 10.5281/zenodo.6354779
title: AIDCO data

description: Dataset of the AIDCO (Important data on COVID-19 profile in Africa) project, performed in Gabon, Senegal and Ethiopia. The dataset has been anonymized. The data dictionary is an extract from the REDCap database system used in the project.
description: Funded by EDCTP grant RIA2020EF-2961
DOI: 10.5281/zenodo.6354778
title: AIDCO data

description: Dataset of the AIDCO (Important data on COVID-19 profile in Africa) project, performed in Gabon, Senegal and Ethiopia. The dataset has been anonymized. The data dictionary is an extract from the REDCap database system used in the project.
description: Funded by EDCTP grant RIA2020EF-2961
DOI: 10.5281/zenodo.6354529
title: Monarch Archive (Experimental)

description: Experimental Archive of Monarch Initiative legacy data. License information: https://monarchinitiative.org/about/licensing