cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5739531.v1
title: Additional file 2: of When honesty and cheating pay off: the evolution of honest and dishonest equilibria in a conventional signalling game

description: Dataset 1. Szalai and Számadó [25] results. (CSV 1421 kb)
DOI: 10.6084/m9.figshare.5739525
title: Additional file 8: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of accession numbers and metadata for isolates. (CSV 56 kb)
DOI: 10.6084/m9.figshare.5739525.v1
title: Additional file 8: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of accession numbers and metadata for isolates. (CSV 56 kb)
DOI: 10.6084/m9.figshare.5739522
title: Additional file 7: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of virulence factors and their corresponding publication and evidence. VFDB refers to the virulence factor database. (CSV 2 kb)
DOI: 10.6084/m9.figshare.5739522.v1
title: Additional file 7: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of virulence factors and their corresponding publication and evidence. VFDB refers to the virulence factor database. (CSV 2 kb)
DOI: 10.6084/m9.figshare.5739519
title: Additional file 6: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of SNPs identified across lineages. (CSV 109 kb)
DOI: 10.6084/m9.figshare.5739519.v1
title: Additional file 6: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of SNPs identified across lineages. (CSV 109 kb)
DOI: 10.6084/m9.figshare.5739516
title: Additional file 5: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of accessory genes identified within the BAPS groups for each patient. (CSV 31 kb)
DOI: 10.6084/m9.figshare.5739516.v1
title: Additional file 5: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of accessory genes identified within the BAPS groups for each patient. (CSV 31 kb)
DOI: 10.6084/m9.figshare.5739513
title: Additional file 4: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of SNPs identified within the BAPS groups for each patient. (CSV 10 kb)
DOI: 10.6084/m9.figshare.5739513.v1
title: Additional file 4: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: List of SNPs identified within the BAPS groups for each patient. (CSV 10 kb)
DOI: 10.6084/m9.figshare.5739504
title: Additional file 2: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: The sequence and annotation files of the plasmid, containing vancomycin resistance genes, in the BAPS2 group. (ZIP 95 kb)
DOI: 10.6084/m9.figshare.5739504.v1
title: Additional file 2: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: The sequence and annotation files of the plasmid, containing vancomycin resistance genes, in the BAPS2 group. (ZIP 95 kb)
DOI: 10.6084/m9.figshare.5739495
title: Additional file 1: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: Sequence file (fasta) containing list of virulence factors studied here. (TXT 60 kb)
DOI: 10.6084/m9.figshare.5739495.v1
title: Additional file 1: of Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients

description: Sequence file (fasta) containing list of virulence factors studied here. (TXT 60 kb)
DOI: 10.6084/m9.figshare.5739492
title: Additional file 2: of Compliance of systematic reviews in ophthalmology with the PRISMA statement

description: Dataset of research. Raw data used for analysis and interpretation. (XLSX 48Â kb)
DOI: 10.25442/hku.12845828
title: Supporting data for "Identification of mammalian-adapting mutations in the viral polymerase complex of avian influenza A viruses"

description: The dataset uploaded includes the next generation sequencing (NGS) data of each of the nine mutant libraries of each of the three polymerase genes (Total 27 libraries). Also, it includes the viral polymerase activity data and the viral replication efficiency data of the selected novel mutants with mammalian-adapting potential.
DOI: 10.6084/m9.figshare.5739477
title: Additional file 3 of Microbiota dysbiosis in inflammatory bowel diseases: in silico investigation of the oxygen hypothesis

description: Zip folder containing all the MATLAB codes used for this paper. (ZIP 447 kb)
DOI: 10.6084/m9.figshare.5739477.v1
title: Additional file 3 of Microbiota dysbiosis in inflammatory bowel diseases: in silico investigation of the oxygen hypothesis

description: Zip folder containing all the MATLAB codes used for this paper. (ZIP 447 kb)
DOI: 10.6084/m9.figshare.5739474
title: Additional file 3: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the WGCNA output for each trait. For each transcript the module membership scores and p-values for all modules were included, and the gene significance score and p-value were given for each trait. (XLSX 81939Â kb)
DOI: 10.6084/m9.figshare.12895004.v1
title: R0191_20171007a_videos

description: Rat 0191, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.5739474.v1
title: Additional file 3: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the WGCNA output for each trait. For each transcript the module membership scores and p-values for all modules were included, and the gene significance score and p-value were given for each trait. (XLSX 81939Â kb)
DOI: 10.6084/m9.figshare.5739465
title: Additional file 1: of Polymorphic duplicate genes and persistent non-coding sequences reveal heterogeneous patterns of mitochondrial DNA loss in salamanders

description: ClustalW-created multiple sequence alignments for each of the mitochondrial protein-coding genes including two individuals representing each A. hardii gene order. (TXT 45 kb)
DOI: 10.5519/qd.mg59lqxd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.5739465.v1
title: Additional file 1: of Polymorphic duplicate genes and persistent non-coding sequences reveal heterogeneous patterns of mitochondrial DNA loss in salamanders

description: ClustalW-created multiple sequence alignments for each of the mitochondrial protein-coding genes including two individuals representing each A. hardii gene order. (TXT 45 kb)
DOI: 10.6084/m9.figshare.5739462
title: Additional file 1: of Resilient coping in the general population: standardization of the brief resilient coping scale (BRCS)

description: SPSS file of BRCS data (N=2508). (SAV 187 kb)
DOI: 10.25442/hku.12845828.v1
title: Supporting data for "Identification of mammalian-adapting mutations in the viral polymerase complex of avian influenza A viruses"

description: The dataset uploaded includes the next generation sequencing (NGS) data of each of the nine mutant libraries of each of the three polymerase genes (Total 27 libraries). Also, it includes the viral polymerase activity data and the viral replication efficiency data of the selected novel mutants with mammalian-adapting potential.
DOI: 10.6084/m9.figshare.5739462.v1
title: Additional file 1: of Resilient coping in the general population: standardization of the brief resilient coping scale (BRCS)

description: SPSS file of BRCS data (N=2508). (SAV 187 kb)
DOI: 10.6084/m9.figshare.5739453
title: Additional file 2: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the top and bottom loading transcripts for PC1 and PC3 from pcaExplorer. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5739453.v1
title: Additional file 2: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the top and bottom loading transcripts for PC1 and PC3 from pcaExplorer. (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.5739438
title: Additional file 1: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the edgeR output from all the contrasts analyzed in this study. Only transcripts with FDRâ
DOI: 10.6084/m9.figshare.5739438.v1
title: Additional file 1: of Resistant and susceptible chicken lines show distinctive responses to Newcastle disease virus infection in the lung transcriptome

description: Contains the edgeR output from all the contrasts analyzed in this study. Only transcripts with FDRâ
DOI: 10.6084/m9.figshare.5739426
title: Additional file 1: Figure S1. of Prediction of survival after neoadjuvant chemotherapy for breast cancer by evaluation of tumor-infiltrating lymphocytes and residual cancer burden

description: Analysis of RCB-TILs status and outcome in breast cancer (Overall Survival, OS). OS was significantly longer for RCB-TILs-positive patients than for RCB-TILs-negative patients in all patients (p = 0.005, log-rank) (A) and TNBC patients (p &lt; 0.001, log-rank) (B), but the difference was not significant for HER2BC patients (p = 0.585, log-rank) (C) or HRBC patients (p = 0.128, log-rank) (D). (ZIP 154 kb)
DOI: 10.6084/m9.figshare.5739426.v1
title: Additional file 1: Figure S1. of Prediction of survival after neoadjuvant chemotherapy for breast cancer by evaluation of tumor-infiltrating lymphocytes and residual cancer burden

description: Analysis of RCB-TILs status and outcome in breast cancer (Overall Survival, OS). OS was significantly longer for RCB-TILs-positive patients than for RCB-TILs-negative patients in all patients (p = 0.005, log-rank) (A) and TNBC patients (p &lt; 0.001, log-rank) (B), but the difference was not significant for HER2BC patients (p = 0.585, log-rank) (C) or HRBC patients (p = 0.128, log-rank) (D). (ZIP 154 kb)
DOI: 10.6084/m9.figshare.5739381
title: Additional file 7: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Identified targets of known miRNAs from Arabidopsis thaliana transcriptome using psRNATarget. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.5739381.v1
title: Additional file 7: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Identified targets of known miRNAs from Arabidopsis thaliana transcriptome using psRNATarget. (XLSX 81Â kb)
DOI: 10.6084/m9.figshare.5739372
title: Additional file 6: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Identified targets of known miRNAs from Oryza sativa transcriptome using psRNATarget. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.5739372.v1
title: Additional file 6: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Identified targets of known miRNAs from Oryza sativa transcriptome using psRNATarget. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.5739336
title: Additional file 1: of Interaction of healthcare worker hands and portable medical equipment: a sequence analysis to show potential transmission opportunities

description: Room Observation Template. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5739336.v1
title: Additional file 1: of Interaction of healthcare worker hands and portable medical equipment: a sequence analysis to show potential transmission opportunities

description: Room Observation Template. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5739315
title: Additional file 2: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Known miRNAs identified in young leaf small RNA population of C. borivilianum. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.5739315.v1
title: Additional file 2: of Small RNA profiling for identification of miRNAs involved in regulation of saponins biosynthesis in Chlorophytum borivilianum

description: Known miRNAs identified in young leaf small RNA population of C. borivilianum. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.5739216
title: Additional file 2: of Developmental biology and potential use of Alboglossiphonia lata (Annelida: Hirudinea) as an “Evo-Devo” model organism

description: Estimates of Evolutionary Divergence between Hirudinea sequences. Analyses were conducted using a Pairwise distance matrix [43]. The rate variation among sites was modeled with a gamma distribution (shape parameter = 1). The analysis involved 29 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 475 positions in the final dataset. Evolutionary analyses were conducted in MEGA7 [44]. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5739216.v1
title: Additional file 2: of Developmental biology and potential use of Alboglossiphonia lata (Annelida: Hirudinea) as an “Evo-Devo” model organism

description: Estimates of Evolutionary Divergence between Hirudinea sequences. Analyses were conducted using a Pairwise distance matrix [43]. The rate variation among sites was modeled with a gamma distribution (shape parameter = 1). The analysis involved 29 nucleotide sequences. All positions containing gaps and missing data were eliminated. There were a total of 475 positions in the final dataset. Evolutionary analyses were conducted in MEGA7 [44]. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.5739186
title: Additional file 1: of Gender differences in job quality and job satisfaction among doctors in rural western China

description: Organized original database for analization. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.5739186.v1
title: Additional file 1: of Gender differences in job quality and job satisfaction among doctors in rural western China

description: Organized original database for analization. (XLSX 195 kb)
DOI: 10.6084/m9.figshare.5739159
title: Additional file 1: Table S1. of Pricing appraisal of anti-cancer drugs in the South East Asian, Western Pacific and East Mediterranean Region

description: The purchasing power parity conversion rates used. Table S2. The respective GNI per capita and country classifications. Table S3. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.5739159.v1
title: Additional file 1: Table S1. of Pricing appraisal of anti-cancer drugs in the South East Asian, Western Pacific and East Mediterranean Region

description: The purchasing power parity conversion rates used. Table S2. The respective GNI per capita and country classifications. Table S3. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.5739123
title: MOESM5 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 5. Primers used for RT-PCR and quantitative RT-PCR analyses in this study.
DOI: 10.6084/m9.figshare.5739123.v1
title: MOESM5 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 5. Primers used for RT-PCR and quantitative RT-PCR analyses in this study.
DOI: 10.6084/m9.figshare.5739111
title: MOESM4 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 4. Fold change and relative metabolite concentrations (Âľg/g FW sorbitol equivalents) of OXPdDUF231A transgenic plants versus empty vector control (K-147) Populus deltoides â WV94â leaves (LPI 5) of 6-month-old greenhouse-grown plants. Metabolites were analyzed as trimethylsilyl derivatives by gas chromatography-mass spectrometry. Data are the average (Avg) and standard error of the mean (sem) of six OXPdDUF231A plants (three plants from each of two independent transgenic lines) and three K-147 control plants. Unknown and partially identified metabolites are designated by retention time, key mass-to-charge (m/z) ratios, and identified moieties.
DOI: 10.6084/m9.figshare.5739111.v1
title: MOESM4 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 4. Fold change and relative metabolite concentrations (Âľg/g FW sorbitol equivalents) of OXPdDUF231A transgenic plants versus empty vector control (K-147) Populus deltoides â WV94â leaves (LPI 5) of 6-month-old greenhouse-grown plants. Metabolites were analyzed as trimethylsilyl derivatives by gas chromatography-mass spectrometry. Data are the average (Avg) and standard error of the mean (sem) of six OXPdDUF231A plants (three plants from each of two independent transgenic lines) and three K-147 control plants. Unknown and partially identified metabolites are designated by retention time, key mass-to-charge (m/z) ratios, and identified moieties.
DOI: 10.6084/m9.figshare.5739051
title: MOESM1 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 1. Protein domain structure prediction of PtDUF231 family proteins.
DOI: 10.6084/m9.figshare.5739051.v1
title: MOESM1 of Overexpression of a Domain of Unknown Function 231-containing protein increases O-xylan acetylation and cellulose biosynthesis in Populus

description: Additional file 1. Protein domain structure prediction of PtDUF231 family proteins.
DOI: 10.6084/m9.figshare.5739021
title: Additional file 9: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Upstream open reading frames within the 5â -UTRs of Fhit-regulated mRNAs. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.5739021.v1
title: Additional file 9: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Upstream open reading frames within the 5â -UTRs of Fhit-regulated mRNAs. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.5738997
title: Additional file 1: of A one-day surgical-skill training course for medical studentsâ improved surgical skills and increased interest in surgery as a career

description: Raw data of SSW. Sheet 1 includes participantsâ score before and after the program. Sheet 2 includes survey of the participants. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5738997.v1
title: Additional file 1: of A one-day surgical-skill training course for medical studentsâ improved surgical skills and increased interest in surgery as a career

description: Raw data of SSW. Sheet 1 includes participantsâ score before and after the program. Sheet 2 includes survey of the participants. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.5738994
title: Additional file 7: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Excel file listing all of the transcripts identified by RIBO-Seq as having increased or decreased ribosome occupancy as a function of Fhit expression. These are ordered by fold change and statistical significance. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5738994.v1
title: Additional file 7: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Excel file listing all of the transcripts identified by RIBO-Seq as having increased or decreased ribosome occupancy as a function of Fhit expression. These are ordered by fold change and statistical significance. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5738958
title: Additional file 4: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Excel file listing all of the transcripts identified by RNA-Seq as having increased or decreased steady-state as a function of Fhit expression. These are ordered by fold change and statistical significance. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.5738958.v1
title: Additional file 4: of Impact of FHIT loss on the translation of cancer-associated mRNAs

description: Excel file listing all of the transcripts identified by RNA-Seq as having increased or decreased steady-state as a function of Fhit expression. These are ordered by fold change and statistical significance. (XLSX 110 kb)
DOI: 10.6084/m9.figshare.5738949
title: Additional file 4 of Expitope 2.0: a tool to assess immunotherapeutic antigens for their potential cross-reactivity against naturally expressed proteins in human tissues

description: TableS4_Cancer. Comma-separated table containing Table S4. (CSV 67 kb)
DOI: 10.5061/dryad.182dv/4
title: Combined VCF for all 29 accessions for chromosome 3
DOI: 10.5061/dryad.182dv/5
title: Combined VCF for all 29 accessions for chromosome 4
DOI: 10.5061/dryad.182dv/6
title: Combined VCF for all 29 accessions for chromosome 5
DOI: 10.5061/dryad.182dv/7
title: Combined VCF for all 29 accessions for chromosome 6
DOI: 10.5061/dryad.182dv/8
title: Combined VCF for all 29 accessions for chromosome 7
DOI: 10.5061/dryad.182dv/9
title: Combined VCF for all 29 accessions for chromosome 8
DOI: 10.5061/dryad.1d52k/1
title: Nexus_full

description: Nexus full dataset with trees
DOI: 10.5061/dryad.1d52k/2
title: Nexus reduced

description: Nexus reduced dataset with trees
DOI: 10.5061/dryad.1d52k/3
title: Supplementary material

description: Associated bivalve remains, recoding of Anguanax zignoi, stratigraphic age data for OTUs, additional phylogeny and ancestral state reconstruction figures.
DOI: 10.5061/dryad.1p55v/1
title: Animal abundances and environment data in Saanich Inlet

description: Data are animal counts and environment data collected during remotely operated vehicle imagery surveys in Saanich Inlet, Vancouver Island, British Columbia, Canada from 2006-2013. Each row entry equals a second of annotated ROV video with associated metadata (e.g. video file properties), water column data (e.g. depth, temperature, oxygen), or species data (presence/absence or counts). Extended details can be found with the associated README file.  Data was collected as part of a PhD thesis (Chu) and is A Canadian Healthy Oceans Network Ecosystem Function project, EF-13.
DOI: 10.5061/dryad.20g8r.1
title: Data from: Asynchronous spawning in sympatric populations of a hard coral reveals cryptic species and ancient genetic lineages
DOI: 10.5061/dryad.20g8r.2/2.2
title: Calmodulin_alignnment

description: This is a Nexus file of the aligned sequences of the nuclear gene "Calmodulin" that were sequenced in this study.
DOI: 10.5061/dryad.20g8r.2/3.2
title: mtDNA_CR_alignment

description: This is a Nexus file of the aligned sequences of the mitochondrial gene "Control Region" that were sequenced in this study.
DOI: 10.5061/dryad.20g8r.2/4.2
title: PaxC_cds_alignment

description: This is a Nexus file of the aligned sequences of an 882 bp fragment of the CODING REGION of the nuclear gene "PaxC" that were sequenced in this study.
DOI: 10.5061/dryad.20g8r.2/5.2
title: PaxC_intron_alignment

description: This is a Nexus file of the aligned sequences of the nuclear "PaxC" INTRON that were sequenced in this study.