cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21842286
title: Supplementary Material for: Validation of a New PCR-Based Screening Method for Prevention of <b><i>Serratia marcescens</i></b> Outbreaks in the Neonatal Intensive Care Unit

description: <b><i>Background:</i></b> <i>Serratia marcescens</i> may cause severe nosocomial infections, mostly in very low birth weight infants. Since <i>S. marcescens</i> exhibits by far the highest adjusted incidence rate for horizontal transmission, it can cause complex outbreak situations in neonatal intensive care units. <b><i>Objective:</i></b> The aim of this study was to establish a fast and highly sensitive colonization screening for prompt cohorting and barrier nursing strategies. <b><i>Methods:</i></b> A probe-based duplex PCR assay targeting the 16S <i>rRNA</i> gene of <i>S. marcescens</i> was developed and validated by using 36 reference strains, 14 <i>S. marcescens</i> outbreak- and nonoutbreak isolates, defined by epidemiological linkage and molecular typing, and applied in 1,347 clinical specimens from 505 patients. <b><i>Results and Conclusions:</i></b> The novel PCR assay proved to be highly specific and had an in vitro sensitivity of 100 gene copies per reaction (∼15 bacteria). It showed a similar (in laryngeal/tracheal specimens) or even higher (in rectal/stoma swabs) in vivo sensitivity in comparison to routine microbial culture and was much quicker (&lt;24 h vs. 2 days). By combining different oligonucleotide primers, there was robust detection of genetic variants of <i>S. marcescens</i> strains. PCR inhibition was low (1.6%) and observed with rectal swabs only. Cohort analysis illustrated applicability of the PCR assay as a quick tool to prevent outbreak scenarios by allowing rapid decisions on cohorting and barrier nursing. In summary, this novel molecular screening for colonization by <i>S. marcescens</i> is specific, highly sensitive, and substantially accelerates detection.
DOI: 10.20372/eiar-rdm/asiplg/qn8pi8
title: 09 EJAS-121-2021 Page 131-142.pdf

description: :unav
DOI: 10.20372/eiar-rdm/asiplg
title: A Holistic Bioeconomic Assessment of the Lake Koka Fishery (Ethiopia): Implications for Management and Livelihood

description: The fishery resource in Lake Koka is very important for food and nutrition security, and livelihoods of many riparian communities. Proper resource utilization is very essential to sustain the benefits of this natural capital for the present and future generations. So far little is known about the state of the fishery in Lake Koka. Therefore, the study aims at combining stock assessment of fishery target species of the Lake Koka with an economic analysis to find out if current exploitation levels are biologically and economically sustainable or need adjustment. Biomass dynamic models (equilibrium and non-equilibrium), bioeconomic model and the Thompson and Bell model were applied to estimate reference points related to Maximum Sustainable Yield (MSY), Maximum Economic Yield (MEY) and their corresponding efforts (fMSY & fMEY). While the reference points estimated using the length-based Thompson and Bell predictive model were not significantly different from the non-equilibrium model, the former model provided a more flexible estimate than the other models. As none of the models tested suggested overfishing of the target resources, I conclude that the general state of the Lake Koka fishery is healthy, but see scope for improvement in terms of socioeconomic benefits if the current minimum length of capture were increased toward the length of capture at MEY.
DOI: 10.17632/dk8gsx2r4j.9
title: French population exposure to Endocrine disruptors in and on plant foodstuffs

description: The folder "Tables" contains: 7 files to analyze an article sent, to Food Chemistry:  Endocrine disruptors on and in fruits and vegetables. Estimation of the potential exposure of the French population 

(1) French PPP-ED: is an Excel file that gathers, in Table 1, Plant Protection Products (PPP) authorised in France, their usage and applications (foodstuffs), as well as their endocrine disrupting effect if any. A tab contains all the references.

(2) French PPP usage-ED: is an Excel file with 4 tables with PPP acting as Endocrine Disruptors (ED). The tables contain the total number of formulas used on 64 fruits and vegetables and the total number of formulas used for the same usage and application. The 4 tables are: Table 2 for Insecticides and acaricides, Table 3: fungicides, Table 4: herbicides, Table 5: growth substances.

(3) Exposure calculation-ED: is an Excel file containing Table 7. It gathers data on the 70 PPP acting as ED, on the 64 fruits and vegetables eaten in France. The table calculates daily exposures to ED-PPP from the annual consumption of each foodstuff, the consumption per capita (French population fixed at 64 million citizens). The PPP doses are specific Maximum Residue Limits multiplied by a popularity factor considering the number of formulas that contain the PPP of use, to the total number of formulas used for the same application (same usage, same plant)

(4) Exposure summary-ED: is an Excel file containing Table 8. This table gathers the calculated exposure to each PPP-ED, sorted by their type of effect (estrogen Pro and Anti; Androgen: Pro and Anti; thyroid effect: Pro and Anti and "Others"). The sum for each effect is given.

(5) Phyto-Product-Enquiry-ED: is an Excel file (Table 6) gathering products recorded in different food categories on French supermarket and websites (March 2020). For all products are site of purchase, URL in March 2020, trademarks, French names, and ingredients. The last tab gives a summary of data with a graphic representation.

(6) Genistein + Daidzein values-ED: is an excel file (Table 9) gathering measurements of genistein + daidzein in 140 soy-based foodstuffs and the mean of measurements for several food categories for exposure calculations.

(7) Table for comparisons: is an excel file (Table 10) gathering in vitro + in vivo data on hormones, natural and anthropogenic EDs. NOAEL + LOAEL usually obtained in rat, are given next to the putative exposure. References are in next tab.

The folder "Figures" contains:

 Figure 1: Representation of the data sorting procedure for PPP analysis. Data are from the European Union pesticide database. (https://ec.europa.eu/food/plant/pesticides/eu-pesticides-database/public/?event=homepage&language=EN accessed in March 2020)

Figure 2: Mean isoflavones content (genistein + daidzein) in different food categories found in French supermarket

Figure 3: Exposure data obtained previously via an inquiry on French premenopausal women (Lee et al., 2019)
DOI: 10.5281/zenodo.2536573
title: Libraries.io Open Source Repository and Dependency Metadata

description: <strong>What is in this release?</strong>

In this release you will find data about software distributed and/or crafted publicly on the Internet. You will find information about its development, its distribution and its relationship with other software included as a dependency. You will not find any information about the individuals who create and maintain these projects.

Further information and documentation on this data set can be found at https://libraries.io/data

For enquiries please contact data@libraries.io

This dataset contains seven csv files:

<strong>Projects</strong>

A project is a piece of software available on any one of the 34 package managers supported by Libraries.io.

<strong>Versions</strong>

A Libraries.io version is an immutable published version of a Project from a package manager. Not all package managers have a concept of publishing versions, often relying directly on tags/branches from a revision control tool.

<strong>Tags</strong>

A tag is equivalent to a tag in a revision control system. Tags are sometimes used instead of Versions where a package manager does not use the concept of versions. Tags are often semantic version numbers.

<strong>Dependencies</strong>

Dependencies describe the relationship between a project and the software it builds upon. Dependencies belong to Version. Each Version can have different sets of dependencies. Dependencies point at a specific Version or range of versions of other projects.

<strong>Repositories</strong>

A Libraries.io repository represents a publically accessible source code repository from either github.com, gitlab.com or bitbucket.org. Repositories are distinct from Projects, they are not distributed via a package manager and typically an application for end users rather than component to build upon.

<strong>Repository dependencies</strong>

A repository dependency is a dependency upon a Version from a package manager has been specified in a manifest file, either as a manually added dependency committed by a user or listed as a generated dependency listed in a lockfile that has been automatically generated by a package manager and committed.

<strong>Projects with related Repository fields</strong>

This is an alternative projects export that denormalizes a projects related source code repository inline to reduce the need to join between two data sets.

<strong>Licence</strong>

This dataset is released under the Creative Commons Attribution-ShareAlike 4.0 International Licence.

This licence provides the user with the freedom to use, adapt and redistribute this data. In return the user must publish any derivative work under a similarly open licence, attributing Libraries.io as a data source. The full text of the licence is included in the data.

<strong>Access, Attribution and Citation</strong>

The dataset is available to download from Zenodo at https://zenodo.org/record/2536573.

Please attribute Libraries.io as a data source by including the words ‘Includes data from Libraries.io’ and reference the Digital Object identifier: 10.5281/Zenodo.2536573
DOI: 10.5281/zenodo.7360390
title: The ARRIVE Essential 10: author checklist – Anti-inflammatory effect of omega-7 against doxorubicin-induced cardiotoxicity in male rats: an observational study

description: The ARRIVE Essential 10: author checklist – Anti-inflammatory effect of omega-7 against doxorubicin-induced cardiotoxicity in male rats: an observational study
DOI: 10.6084/m9.figshare.21840354
title: Supplementary Material for: Effect of Different Types of Hypoglycemic Medications on Psoriasis: An Analysis of Current Evidence

description: <b><i>Background:</i></b> Psoriasis is a chronic recurrent inflammatory skin disease with a high risk of diabetes based on disease severity. <b><i>Objectives:</i></b> The aim of the study was to evaluate the efficacy of different hypoglycemic medications in patients with psoriasis. <b><i>Methods:</i></b> A systematic review and meta-analysis of studies were conducted to evaluate the efficacy of hypoglycemic medications in patients with psoriasis. The primary outcome was of changes in the psoriasis area and severity index (PASI) score, and a 75% improvement in PASI from baseline (PASI75). Subgroup analysis was used to investigate associations among the types of hypoglycemic medicines, combination therapy, patient characteristics, course of treatment, and curative effect. <b><i>Results:</i></b> We included 3,286 patients from 19 studies to explore the effects of hypoglycemic medications. Patients randomized to receive hypoglycemic medicines showed a more significant decrease in the PASI score (standard mean difference = −0.55, 95% confidence interval (CI): −0.87 to −0.23, <i>p</i> = 0.0007) and a higher PASI75 ratio (RR: 1.80, 95% CI: 1.20–2.71, <i>p</i> = 0.0046). Patients consuming thiazolidinediones (TZDs) were more likely to reach PASI75 than those consuming glucagon-like peptide 1 receptor agonists (GLP-1 RAs) and dipeptidyl peptidase 4 inhibitors. The combined use of hypoglycemic medicines had an add-on effect on the standard psoriasis treatment, and the proportion of PASI75 in the combination group was nearly four times that in the noncombination group (<i>p</i> = 0.0216). In addition, hypoglycemic medications can reduce body weight, waist circumference, triglyceride, total cholesterol, low-density lipoprotein, and systolic blood pressure. <b><i>Conclusions:</i></b> Certain hypoglycemic drugs, such as GLP-1 RAs and TZDs, are beneficial for treating psoriasis. Multidisciplinary collaboration is recommended for the management of systemic inflammation in patients with psoriasis and diabetes.
DOI: 10.18434/m32190
title: Genome In A Bottle - v2.0 Genome Stratifications (Deprecated)

description: These stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium are intended as a standard resource of BED files for use in stratifying true positive, false positive, and false negative variant calls.
DOI: 10.5281/zenodo.7022698
title: Experimentally Shock-Induced Melt Veins in Basalt: Improving the Shock Classification of Eucrites

description: Data supporting Figures 2–3 in the main text are available.
description: This research was supported by JSPS KAKENHI grant JP19H00726. K.K. is supported by JSPS KAKENHI grant JP18H04464. K.K. and T.N. are supported by JSPS KAKENHI grant JP21K18660. T.M. is supported by JSPS KAKENHI grant 21K18645.
DOI: 10.20372/eiar-rdm/hgqdlc/1fiv08
title: 08 EJAS-111-2021 Page 113-130.pdf

description: :unav
DOI: 10.20372/eiar-rdm/hgqdlc
title: Role of Sugarcane Tops as Feed Resource in Two Sugar Estates of Central Ethiopia

description: This study aimed to assess the production and utilization of sugarcane tops (SCTs) by livestock farms in and around Wonji-Shoa and Metehara sugar estates. A total of 308 households were interviewed using a semi-structured questionnaire, where data on household characteristics, and acquisition, utilization, feeding practices, preserving and marketing of SCTs were collected. Secondary data on sugarcane production were taken from the sugar factories. The estimated production of SCT is proportional to the volume of sugarcane produced or milled and area of sugarcane field harvested, which was higher in Metehara compared to Wonji-Shoa sugar estate. The volume of burnt SCTs surpassed that of green SCTs as the pre-harvest burning practice of sugarcane fields favors the abundant availability of the former. Sugarcane tops were used as feedstuff by the entire surveyed households, primarily for ruminants feeding. Besides, a significant proportion of farmers reported to use SCTs for other purposes viz. fuel source (50%) and construction (37%). Availability and feed use of the burnt SCT surpassed that of green SCT, mainly during the dry season, or dearth period. Sugarcane tops were sold to urban livestock producers, their price being varied with the sugar estate, SCT type and distance from the source (field). Farmers preferred the burnt to green SCTs, and thin-stem to thick stem varieties for livestock feeding. Sugarcane tops were usually fed to animals intact or chopped. Farmers practiced preserving intact SCTs by sun-drying and stored in open-air. Limitations in the feed use of SCTs in the study area included its low quality (91.2%), lack of technical supports (89%), lack of transport (26%), mouth injury on animals associated with feeding unprocessed SCTs (16.2%) and lack of family labor and capital (11.7%). In conclusion, SCTs are available yearround and contribute significantly as livestock feed in the study areas. However, it was poorly utilized due to harvesting method employed by the industry, poor handling by farmers and lack of technical supports. Therefore, intervention in areas of SCTs processing, conservation, feeding and marketing is important to enhance its feed use by livestock farms around sugar industries or beyond.
DOI: 10.20372/eiar-rdm/7cfl9b/p6evl4
title: 198460-Article Text-499261-1-10-20200807.pdf

description: :unav
DOI: 10.20372/eiar-rdm/7cfl9b
title: The Prevalence of Fish Parasites of Nile Tilapia (Oreochromis niloticus) in Selected Fish farms, Amhara Regional State

description: This study was conducted to assess the prevalence of fish parasites collected from selected small-scale fish farms in selected zones of Amhara regional state. Three small scale private fish farms and one government owned fish seed multiplication farm were considered in this study. Nile tilapia (Oreochromis niloticus) samples were collected from selected fish ponds in using seine nets and were transported live to the Bahirdar Fishery and Other Aquatic Life Research Center laboratory. Parasites were identified to the genera level with parasitological laboratory procedures and identification keys. Accordingly, eight genera of fish parasites belonging to trematodes (Clinostomum spp, Diplostomum spp., and Neascus), nematode (Contracaecum spp.), monogenea (Cichlidogyrus spp.), Acanthocephala spp., crustacean (Argulus spp.) and protozoan (Trichodina spp.) were identified. Among 198 sampled O. niloticus, 73.2% of the fish were infected by different external and internal parasites. Further studies of fish parasites in the region should be done the considering spatial and temporal or biotic and a biotic factor in disease causations in aquaculture
DOI: 10.3886/e117169v1
title: Data and Code for: Long-Term Finance and Investment with Frictional Asset Markets

description: Trading frictions in financial markets affect more long- than short-term bonds generating an upward sloping yield curve. Long-term financing is more expensive in economies with higher trading frictions so firms choose to borrow and invest in shorter horizons and lower productivity projects. The theory guides a new identification of the slope of liquidity spread in the data. We measure and calibrate the model for the US, and counterfactual exercises suggest that variations in trading frictions can have significant effects on maturity choices and investment. A policy intervention improves liquidity, reduce long-term financial costs and promotes investment in longer-term projects.<br>
DOI: 10.5281/zenodo.4085411
title: Datasets to "Turbulent radiative diffusion and turbulent Newtonian cooling"

description: <pre>This directory contains an index.html file with links to the run directories for Figs.1, 2-6 and idl plotting routines with secondary data for the other figures for the paper "Turbulent radiative diffusion and turbulent Newtonian cooling".</pre>
DOI: 10.6084/m9.figshare.21485691.v2
title: The future of Arabic language learning for non-Muslims as an actualization of wasathiyah Islam in Indonesia

description: The research was carried out with two approaches, namely quantitative first and followed by qualitative. Research data is analyzed critically and comparatively, through this analysis technique research findings will become logical for the readers. Looking at the results of the study it can be concluded that; <em>First</em>, learning Arabic for non-Muslims in Indonesia has a great opportunity, this finding is based on the basic function of language as a communication tool. This includes the meaning that learning any language is not limited by religion, ethnicity, or race. <em>Second</em>, learning Arabic for non-Muslims in Indonesia will be part of the basis for the actualization of Wasathiyah Islam in Indonesia. This research uses a <em>mix method</em> or mixed methods. The design of this research was used <em>sequential explanatory design</em>, which combines quantitative and qualitative approaches sequentially. [26]. The quantitative approach used is in the form of a survey where the researcher conducted a survey to the respondents who are the research sample. Meanwhile, the qualitative approach used <em>focused interviews</em> which are described descriptively. The kind of this research is conducted to obtain more comprehensive data on “The Future of Arabic Language Learning for Non-Muslims as the Actualization of Wasathiyah Islam in Indonesia” because it integrates the benefits of the two methods. The samples used in this study were as many as 64 respondents. The sampling technique of this research used was a <em>cluster random sampling technique</em> combined with <em>convenience sampling</em>, meaning that the sample is taken at random and also selected based on the availability of respondents and the ease of obtaining data. Quantitative survey data were analyzed by doing a percentage of the data obtained from the questionnaire, then the data were analyzed using quantitative descriptive. Meanwhile, qualitative data were analyzed using the Miles and Huberman model. <em>First,</em> after the data was collected, the researcher classified the data based on the specified research problem. <em>Second,</em> the researcher presented the data according to the specified problem. <em>Third,</em> the researcher concluded the findings from the research problem. Based on the research findings, this analysis focused on the three problems that have been formulated and the data critically examined by following these three stages.
DOI: 10.26189/5da7a8603c55c
title: Grape image database
DOI: 10.34820/fk2/cdbqpc
title: The Influence of Strategic Innovation Management on Firm Innovation Performance in Indonesian Mid-Size Telecommunication Industry

description: This dataset contains the data gathered for the research entitled "The Influence of Strategic Innovation Management on Firm Innovation Performance in Indonesian Mid-Size Telecommunication Industry". The data were gathered mainly from questionnaire designated for the research subjects.
DOI: 10.5281/zenodo.7379645
title: Chandra HRC-I Jupiter X-ray data set

description: Data set to supplement code scripts contained in the repository: https://github.com/SeanMcEntee/cxo_goes_disk_study
description: {"references": ["Cecconi, Baptiste, Louis, Corentin K, Lamy, Laurent, Zarka, Philippe, & Hess, S\u00e9bastien L G. (2022). LESIA-Mag_IDL: LESIA Planetary Magnetic Field IDL computing scripts (V1.1). Zenodo. https://doi.org/10.5281/zenodo.7235424"]}
DOI: 10.5281/zenodo.7474658
title: AntiRef100

description: AntiRef100 is one of several AntiRef cluster datasets. AntiRef100 was created by clustering the entire filtered AntiRef dataset at 100% sequence identity.
DOI: 10.5281/zenodo.7475962
title: AntiRef99

description: AntiRef99 is one of several AntiRef cluster datasets. AntiRef99 was created by clustering AntiRef100 at 99% sequence identity.
DOI: 10.5281/zenodo.7476041
title: AntiRef98

description: AntiRef98 is one of several AntiRef cluster datasets. AntiRef98 was created by clustering AntiRef99 at 98% sequence identity.
DOI: 10.5281/zenodo.7487183
title: AntiRef96

description: AntiRef96 is one of several AntiRef cluster datasets. AntiRef96 was created by clustering AntiRef98 at 96% sequence identity.
DOI: 10.5281/zenodo.7487200
title: AntiRef94

description: AntiRef94 is one of several AntiRef cluster datasets. AntiRef94 was created by clustering AntiRef96 at 94% sequence identity.