cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4bn6pk
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sicista loriger (Nathusius, 1840)"
 ]
}

 The dataset includes 118 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003284-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25360471
title: A Human Brain Map of Mitochondrial Respiratory Capacity and Diversity

description: Supplementary Video 1 | Human brain slab voxelization using a computer numerical control (CNC) cutter. Milling was done over ~5h at -25°C (freezer room) with routing of the drill bit controlled by a computer in the next room (+4°C).

Supplementary File 1 | Extended discussion of the loadings for MRI-based metrics and mitochondria biology from Extended Table 1.

Source Data 1 | Analysis of snRNAseq data. Detailed markdown of the single nucleus RNA sequencing (snRNAseq) analysis, including the code for data pre-processing, visualization, cluster identification and mitochondrial analysis. This file also shows additional figures supporting the analysis. An HTML file also available at http://humanmitobrainmap.bcblab.com.

Source Data 2 | A complete dataset of mitochondrial parameters (CI-IV activities, MitoD, TRC and MRC) and their correlations with MRI and PET metrics. An Excel spreadsheet with MRI and PET values for each voxel.

Source Data 3 | Software for the voxelization of the tissue. Igor Pro procedure file for 1) defining the parameters to clean and partition a frozen brain slab, 2) generating G-codes used to control the CNC router, and 3) randomizing samples and assigning them to specific assay plates. 

Source Data 4 | Software for the voxelization of the tissue. Igor Pro procedure file for 1) derandomizing the samples after the assays are complete, and 2) plotting the assay data on the topological map of the brain.

Source Data 5 | Morphing the image of the brain onto MNI space coordinates. Python code used for the conversion of the image of the brain slab to Neuroimaging Informatics Technology Initiative (NIfTI) format.
DOI: 10.6084/m9.figshare.25360471.v1
title: A Human Brain Map of Mitochondrial Respiratory Capacity and Diversity

description: Supplementary Video 1 | Human brain slab voxelization using a computer numerical control (CNC) cutter. Milling was done over ~5h at -25°C (freezer room) with routing of the drill bit controlled by a computer in the next room (+4°C).

Supplementary File 1 | Extended discussion of the loadings for MRI-based metrics and mitochondria biology from Extended Table 1.

Source Data 1 | Analysis of snRNAseq data. Detailed markdown of the single nucleus RNA sequencing (snRNAseq) analysis, including the code for data pre-processing, visualization, cluster identification and mitochondrial analysis. This file also shows additional figures supporting the analysis. An HTML file also available at http://humanmitobrainmap.bcblab.com.

Source Data 2 | A complete dataset of mitochondrial parameters (CI-IV activities, MitoD, TRC and MRC) and their correlations with MRI and PET metrics. An Excel spreadsheet with MRI and PET values for each voxel.

Source Data 3 | Software for the voxelization of the tissue. Igor Pro procedure file for 1) defining the parameters to clean and partition a frozen brain slab, 2) generating G-codes used to control the CNC router, and 3) randomizing samples and assigning them to specific assay plates. 

Source Data 4 | Software for the voxelization of the tissue. Igor Pro procedure file for 1) derandomizing the samples after the assays are complete, and 2) plotting the assay data on the topological map of the brain.

Source Data 5 | Morphing the image of the brain onto MNI space coordinates. Python code used for the conversion of the image of the brain slab to Neuroimaging Informatics Technology Initiative (NIfTI) format.
DOI: 10.6084/m9.figshare.27914064
title: Structure of dimerized assimilatory NADPH-dependent sulfite reductase reveals the minimal interface for diflavin reductase binding

description: Maps and models for a complex between monomeric sulfite reductase flavoprotein and its hemoprotein partner determined at 2.87 Angstroms-resolution by cryo-EM.
DOI: 10.6084/m9.figshare.27914064.v1
title: Structure of dimerized assimilatory NADPH-dependent sulfite reductase reveals the minimal interface for diflavin reductase binding

description: Maps and models for a complex between monomeric sulfite reductase flavoprotein and its hemoprotein partner determined at 2.87 Angstroms-resolution by cryo-EM.
DOI: 10.15468/dl.jy3gh2
title: Occurrence Download

description: A dataset containing 1477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus leptodactyloides (Andersson, 1945)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1477 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003285-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26403124
title: Structural insights into lipid chain-length selectivity and allosteric regulation of FFA2

description: PDB files and cryo-EM map files (unsharpened and sharpened maps) for active FFA2-Gi complex and inactive FFA2.
DOI: 10.6084/m9.figshare.26403124.v1
title: Structural insights into lipid chain-length selectivity and allosteric regulation of FFA2

description: PDB files and cryo-EM map files (unsharpened and sharpened maps) for active FFA2-Gi complex and inactive FFA2.
DOI: 10.5281/zenodo.15093853
title: The results of High temperature compression tests of porous H-X alloys
DOI: 10.5281/zenodo.15093854
title: The results of High temperature compression tests of porous H-X alloys
DOI: 10.6084/m9.figshare.27992525
title: CREB3 gain of function variants protect against ALS

description: GWAS meta-analysis summary-statistics
DOI: 10.6084/m9.figshare.27992525.v1
title: CREB3 gain of function variants protect against ALS

description: GWAS meta-analysis summary-statistics
DOI: 10.6084/m9.figshare.26124745
title: High-resolution cryo-EM structures of a protein pore reveal diverse roles of membrane lipids

description: The data contain:
1. maps and models of the octameric pore of the wild-type Fav (wtFav) protein formed on liposomes composed of DOPC:sphingomyelin 1:1 (DOPCsm), DOPC:sphingomyelin:cholesterol 1:1:1 (DOPCsmCH) and POPG:sphingomyelin:cholesterol (POPGsmCH).

2. map of the octameric pore of the wild-type Fav (wtFav) protein formed on nanodiscs (nanoDIsc) composed of DOPC:sphingomyelin:cholesterol 1:1:1 (DOPCsmCH).

3. Crystallographic files related to X-ray structure of the truncated wild-type Fav protein: five files starting with d53Fav.
DOI: 10.6084/m9.figshare.26124745.v1
title: High-resolution cryo-EM structures of a protein pore reveal diverse roles of membrane lipids

description: The data contain:
1. maps and models of the octameric pore of the wild-type Fav (wtFav) protein formed on liposomes composed of DOPC:sphingomyelin 1:1 (DOPCsm), DOPC:sphingomyelin:cholesterol 1:1:1 (DOPCsmCH) and POPG:sphingomyelin:cholesterol (POPGsmCH).

2. map of the octameric pore of the wild-type Fav (wtFav) protein formed on nanodiscs (nanoDIsc) composed of DOPC:sphingomyelin:cholesterol 1:1:1 (DOPCsmCH).

3. Crystallographic files related to X-ray structure of the truncated wild-type Fav protein: five files starting with d53Fav.
DOI: 10.15468/dl.wkcmbq
title: Occurrence Download

description: A dataset containing 1544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus mystaceus (Spix, 1824)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1544 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003287-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28563698
title: Engineering tunable fractional Shapiro steps in colloidal transport

description: Source data files in .txt and .xlx format.
DOI: 10.6084/m9.figshare.28563698.v1
title: Engineering tunable fractional Shapiro steps in colloidal transport

description: Source data files in .txt and .xlx format.
DOI: 10.6084/m9.figshare.22817468
title: Balla_MotionClouds_DataTable

description: Data Table with all values related to the data shown in the manuscript text and figures.
DOI: 10.6084/m9.figshare.22817468.v1
title: Balla_MotionClouds_DataTable

description: Data Table with all values related to the data shown in the manuscript text and figures.
DOI: 10.5281/zenodo.15093169
title: Cloud observations in China during 2008 to 2020
DOI: 10.15468/dl.8tuwu2
title: Occurrence Download

description: A dataset containing 165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Panthera leo (Linnaeus, 1758)"
 ]
}

 The dataset includes 165 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003288-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28674704
title: <b>When Does “Assistant Heuristic” Work? Examining the Effect of AI Job Titles in Tasks with Varying Criticalities on the Use of Conversational AI-Based Services</b>

description: Recent marketing trends involve companies using low-status job titles, such as "assistant" (e.g., Google Home Assistant), to label conversational AI agents. This strategy aims to activate an altruistic "assistant" heuristic and enhance users' willingness to use these AI agents. However, this paper—comprising one pretest (N=313), three experiments (N=307, N=300, N=308), and one partial least squares structural equation modeling (PLS-SEM) analysis (N=309)—demonstrates that the effect of this strategy on willingness to use is positive only when the task criticality is high. When the task criticality is not high, higher-hierarchy AI titles (e.g., "manager," "teacher," "analyst") generate greater willingness to use. The research examines three alternative serial mediation pathways—perceived warmth, perceived control, and perceived risks—to test for competing explanations alongside the focal serial mediation through perceived humanlikeness and competence. Across the four studies, the serial mediation via perceived humanlikeness and competence remained robust, even when controlling for alternative pathways and scenario realism (Study 3). The final model indicates that when task criticality is not high, increased perceptions of hierarchical status in conversational AI settings enhance perceived humanlikeness. This, in turn, boosts perceived competence, ultimately increasing users' willingness to use the AI. However, when task criticality is high, the effect reverses—higher-status AI is perceived as less humanlike and less competent, reducing users' willingness to engage with it.
DOI: 10.15468/dl.efu6gp
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus natalensis Lutz, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 164 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003290-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/11181746
title: PRISMA-P Checklist
DOI: 10.15468/dl.hw4ts8
title: Occurrence Download

description: A dataset containing 1459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus pentadactylus (Laurenti, 1768)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1459 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003293-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kuvsbt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atimia truncatella Holzschuh, 2007"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003295-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38gurm
title: Occurrence Download

description: A dataset containing 15193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Puma concolor (Linnaeus, 1771)",
 "Year 2010-2025"
 ]
}

 The dataset includes 15193 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003296-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8h377q
title: Occurrence Download

description: A dataset containing 1032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus petersii (Steindachner, 1864)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1032 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003297-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzhjf8
title: Occurrence Download

description: A dataset containing 321 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus rhodonotus (Günther, 1869)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 321 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003298-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/118c6472-dfc4-419b-ba0f-5d2baba77748
title: Data underlying the publication: Model-based aberration corrected microscopy inside a glass tube

description: Data for the paper "Model-based aberration corrected microscopy inside a glass tube".<br>Microscope objectives achieve near diffraction-limited performance only when used under the conditions they are designed for. In non-standard geometries, such as thick cover slips or curved surfaces, severe aberrations arise, inevitably impairing high-resolution imaging. Correcting such large aberrations using standard adaptive optics can be challenging: existing solutions are either not suited for strong aberrations, or require extensive feedback measurements, consequently taking a significant portion of the photon budget. We demonstrate that it is possible to pre-compute the corrections needed for high-resolution imaging inside a glass tube based on a priori information only. Our ray-tracing based method achieved over an order of magnitude increase in image contrast without the need for a feedback signal.<br>Contents:1. 3-D 2PEF scans of fluorescent beads inside a glass tube.2. Brightfield microscopy images of the glass tube.3. Parameter scans of the phase correction patterns.4. Sensorless AO scans (Zernike mode scans).5. Ray-traced model-based phase correction patterns for glass tube.6. Code to recreate figures from the paper from raw data.7. Protocol to create tube samples.
DOI: 10.4121/118c6472-dfc4-419b-ba0f-5d2baba77748.v1
title: Data underlying the publication: Model-based aberration corrected microscopy inside a glass tube

description: Data for the paper "Model-based aberration corrected microscopy inside a glass tube".<br>Microscope objectives achieve near diffraction-limited performance only when used under the conditions they are designed for. In non-standard geometries, such as thick cover slips or curved surfaces, severe aberrations arise, inevitably impairing high-resolution imaging. Correcting such large aberrations using standard adaptive optics can be challenging: existing solutions are either not suited for strong aberrations, or require extensive feedback measurements, consequently taking a significant portion of the photon budget. We demonstrate that it is possible to pre-compute the corrections needed for high-resolution imaging inside a glass tube based on a priori information only. Our ray-tracing based method achieved over an order of magnitude increase in image contrast without the need for a feedback signal.<br>Contents:1. 3-D 2PEF scans of fluorescent beads inside a glass tube.2. Brightfield microscopy images of the glass tube.3. Parameter scans of the phase correction patterns.4. Sensorless AO scans (Zernike mode scans).5. Ray-traced model-based phase correction patterns for glass tube.6. Code to recreate figures from the paper from raw data.7. Protocol to create tube samples.
DOI: 10.4121/118c6472-dfc4-419b-ba0f-5d2baba77748.v2
title: Data underlying the publication: Model-based aberration corrected microscopy inside a glass tube

description: Data for the paper "Model-based aberration corrected microscopy inside a glass tube".<br>Microscope objectives achieve near diffraction-limited performance only when used under the conditions they are designed for. In non-standard geometries, such as thick cover slips or curved surfaces, severe aberrations arise, inevitably impairing high-resolution imaging. Correcting such large aberrations using standard adaptive optics can be challenging: existing solutions are either not suited for strong aberrations, or require extensive feedback measurements, consequently taking a significant portion of the photon budget. We demonstrate that it is possible to pre-compute the corrections needed for high-resolution imaging inside a glass tube based on a priori information only. Our ray-tracing based method achieved over an order of magnitude increase in image contrast without the need for a feedback signal.<br>Contents:1. 3-D 2PEF scans of fluorescent beads inside a glass tube.2. Brightfield microscopy images of the glass tube.3. Parameter scans of the phase correction patterns.4. Sensorless AO scans (Zernike mode scans).5. Ray-traced model-based phase correction patterns for glass tube.6. Code to recreate figures from the paper from raw data.7. Protocol to create tube samples.
DOI: 10.15468/dl.u5uhb2
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus troglodytes Lutz, 1926",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 314 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003299-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/feb7423b-8194-4d99-89d8-593023e06473.v1
title: Data underlying chapter 3 of PhD thesis: Building the genome of a minimal synthetic cell

description: This dataset belongs to the PhD thesis of Céline Cleij titled "Building the genome of a minimal synthetic cell".Specifically, the dataset belongs to Chapter 3 titled "Synthetic chromosome assembly in yeast for cell-free protein synthesis".<br>Authors: Céline Cleij, Pascale Daran-Lapujade, Christophe DanelonCorresponding authors: Pascale Daran-Lapujade and Christophe DanelonContact information: p.a.s.daran-lapujade@tudelft.nl and danelon@insa-toulouse.fr<br>This dataset contains data collected during experiments as part of Céline Cleij's PhD project. The data was collected from 2021-2025.<br>Raw Nanopore sequencing reads (fastq) were obtained in-house using MinION technology (Oxford Nanopore Technologies, Oxford, UK).Consensus SynChrs sequences (GenBank) were obtained after de novo assembly of the processed Nanopore sequencing reads using Flye or Canu. If necessary, a consensus SynChr sequence was assembled in SnapGene using information from the Flye and Canu assemblies and raw reads.Designed SynChr sequences (GenBank) were prepared using SnapGene, using the plasmid maps of the sequenced template plasmids and the designed primer sequences.<br>All data processing and analysis steps are described in detail in the Methods section of the publication.<br>The data is grouped into three zip files:i) Raw Nanopore sequencing readsFiles are named after the yeast strain from which total DNA was extracted. For IMF51 and IMF54, raw reads of the second sequencing run are deposited.<br>ii) Consensus SynChr sequencesFiles are named after the yeast strain from which total DNA was extracted, and after the SynChr version (SynChr_control or SynChr_PURE) which was assembled in this strain.<br>iii) Designed SynChr sequencesFiles are named after the SynChr version (SynChr_control, SynChr_PURE, SynChr_control_2mu, SynChr_PURE_2mu).
DOI: 10.15468/dl.whb3pw
title: Occurrence Download

description: A dataset containing 451 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinctada maxima (Jameson, 1901)"
 ]
}

 The dataset includes 451 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003300-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f32k8t
title: Occurrence Download

description: A dataset containing 180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptodactylus vastus Lutz, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 180 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003301-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfy8em
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paratimia conicola Fisher, 1915"
 ]
}

 The dataset includes 150 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003302-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qegfcj
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ambrosia ×helenae Rouleau"
 ]
}

 The dataset includes 28 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003303-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3spmzz
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Atheris squamigera Hallowell, 1854",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 153 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049877-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.