cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/d1.1339
title: 10X protein and mRNA counts

description: Dataset for "Protein velocity and acceleration from single-cell multiomics experiments." Source data from 10X Genomics at https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_1k_protein_v3 and https://support.10xgenomics.com/single-cell-gene-expression/datasets/3.0.0/pbmc_10k_protein_v3.
DOI: 10.22002/d1.1337
title: Data for "Statistically Steady State Large-Eddy Simulations Forced by an Idealized GCM: 1. Forcing Framework and Simulation Characteristics"

description: This dataset provides time-averaged GCM and LES data required to produce results in the paper "Statistically Steady State Large-Eddy Simulations Forced by an Idealized GCM: 1. Forcing Framework and Simulation Characteristics". It also includes an example script that can be used to generate Figure 8.
DOI: 10.22002/d1.1338
title: Formation Kinetics of Ethane Clathrate on Titan

description: Data behind figures for "Rapid Formation of Clathrate Hydrate From Liquid Ethane and Water Ice on Titan," published in Geophysical Research Letters on Jan 29, 2020
description: Related Publication:
Rapid Formation of Clathrate Hydrate from Liquid Ethane and Water Ice on Titan

Tuan H. Vu, Mathieu Choukroun, Christophe Sotin, Victoria Munoz-Iglesias, Helen E. Maynard-Casely

Geophysical Research Letters

2020-01-29

https://doi.org/10.1029/2019GL086265
eng
DOI: 10.22002/d1.1335
title: Kinematics variables of Higgs and background data

description: Raw kinematic variables of simulated diphoton Higgs boson decays (kinematical_variables-sig.csv) and other diphoton decay channels (kinematical_variables-bkg.csv). Weak classifiers are constructed from cuts on these variables to produce weak classification signals for Higgs (sig.csv) and other Standard Model (bkg.csv) diphoton decays.
description: Related Publication:
Solving a Higgs optimization problem with quantum annealing for machine learning

Alex Mott Department of Physics, California Institute of Technology, Pasadena, 91125, California, USA. DeepMind, London, UK.

Joshua Job Department of Physics, University of Southern California, Los Angeles, 90089, California, USA. Center for Quantum Information Science and Technology, University of Southern California, Los Angeles, 90089, California, USA.

Jean-Roch Vlimant Department of Physics, California Institute of Technology, Pasadena, 91125, California, USA

Daniel Lidar Center for Quantum Information Science and Technology, University of Southern California, Los Angeles, 90089, California, USA. Departments of Electrical Engineering, Chemistry and Physics, University of Southern California, Los Angeles, 90089, California, USA.

Maria Spiropulu Department of Physics, California Institute of Technology, Pasadena, 91125, California, USA.

Nature

2017-10-19

https://doi.org/10.1038/nature24047
eng
DOI: 10.22002/d1.1328
title: Experimental velocity measurements of sub-Rayleigh and superstar ruptures

description: The experimental velocity measurements of sub-Rayleigh and superstar ruptures are provided for the four experiments discussed in the related publication. Variable names used in the MAT files are explained in the "Readme" file.
description: Related Publication:
Spatiotemporal properties of sub-Rayleigh and supershear ruptures inferred from full-field dynamic imaging of laboratory experiments

Rubino Vito California Institute of Technology

Rosakis Ares J. California Institute of Technology

Lapusta Nadia California Institute of Technology

Journal of Geophysical Research: Solid Earth
eng
DOI: 10.22002/d1.1319
title: Sand-Tube-Rock Outdoor Dataset

description: Source images for relighting:
- In directory source_images :
- 15 images of the scene captured in the morning along a circle of
approximate radius 1.5 m centered on a sample tube
- Target lighting conditions:
- In directory target_images :
- 1 image of the scene captured around noon (12:53 pm)
- 1 image of the scene captured in the afternoon (15:52 pm)
- File naming convention:
- ${ time_slot }-${ viewpoint_index }-${ time_hms }.png
- time_slot : am (morning), nn (noon), pm (afternoon)
- viewpoint_index : 01, 02, …, 15
- time_hms : capture time in hh:mm:ss format
DOI: 10.22002/d1.1316
title: Widespread Shallow Water Ice on Mars at High and Mid Latitudes

description: The auxiliary information associated with "Widespread Shallow Water Ice on Mars at High and Mid Latitudes" 
by Piqueux et al. consists of a set of 2 maps (d_m.ascii and TI_SI.ascii) and 2 coordinate files (Lon.ascii and Lat.ascii).
- d_m.ascii (720 x 360): Depth to the top of the water ice table, in meter
- TI_SI.ascii (720 x 360): Upper (dry) regolith thermal inertia, in J m^2 K-1 s^-1/2
These maps are projected on a simple cylindrical canevas; the coordinates can be using these two files:
- Lon.ascii (720 x 1)
- Lat.ascii (1 x 360)

Resolution is 2ppd. Empty bin are assigned -32768.

These files were created from work performed at the Jet Propulsion Laboratory, California Institute of Technology, under a contract with NASA.
Government Support Acknowledged.
DOI: 10.22002/d1.1315
title: Processed Images and Summary Files for "Phsyiological Adaptability and Parametric Versatility in a Simple Genetic Circuit"

description: This data set contains  Matlab `clist` files that are derived from segmentation and lineage tracking of bacterial cells growing under a microscope. This data set can be used to extract information about segmented cells, but contains no images.
DOI: 10.22002/d1.1308
title: Signatures of the r-process in Ancient Stellar Populations Using Barium Abundances

description: Machine readable tables from Chapter 2 of the thesis titled "Signatures of the r-process in Ancient Stellar Populations Using Barium Abundances".
DOI: 10.22002/d1.1304
title: Aeolian cross-set thicknesses from the Page Sandstone: Original, blended data, and synthetic comparisons

description: This dataset has 4 tables utilized in the associated publication: cross-set thicknesses from the Page Sandstone, all experiment results on the Page thicknesses, the normally distributed synthetic thicknesses, and the experimental results on the normally distributed thicknesses.
description: Related Publication:
The effect of remote sensing resolution limits on aeolian sandstone measurements and the reconstruction of ancient dune fields on Mars: Numerical experiment using the Page Sandstone, Earth

Benjamin T. Cardenas Caltech

Travis Swanson Georgia Southern University

Timothy A. Goudge University of Texas at Austin

R. Wayne Wagner University of New Orleans

David Mohrig University of Texas at Austin

Journal of Geophysical Research: Planets
eng
DOI: 10.22002/d1.1299
title: Replication data for "Reevaluation of Perchlorate in Gale Crater Rocks Suggests Geologically Recent Perchlorate Addition"

description: Laboratory data generated in support of the manuscript titled "Reevaluation of Perchlorate in Gale Crater Rocks Suggests Geologically Recent Perchlorate Addition" in the Journal of Geophysical Research: Planets. Additional data may be found in the NASA PDS. See manuscript for details of data collection.
DOI: 10.22002/d1.1296
title: Belgium Distributed Acoustic Sensing Array Raw Data

description: This file contains 1 hr of raw strain data from the Belgium Distributed Acoustic Sensing Array acquired on August 19, 2018 including the principle body wave phases from the M8.2 Fiji deep earthquake of the same date. The data is provided in a Matlab format (.mat) binary data file, which contains a data block (channels x time samples) and some header information. For more information on reading and interpreting the data in this file, please contact the authors (email: efwillia@gps.caltech.edu).
DOI: 10.22002/d1.1294
title: Raw Data for Publication: A Subcritical Water Extractor Prototype for Potential Astrobiology Spaceflight Mission

description: Raw Data for Publication: A Subcritical Water Extractor Prototype for Potential Astrobiology Spaceflight Missions. Includes pressure curve, heating curve, pH measurements, ORP measurements, conductivity measurements, electropherograms, total amino acid content, enantiomeric excess, force sensitive resistor calibration and measurements.
DOI: 10.22002/d1.1277
title: Aeolian cross-set thickness measurements: Page Sandstone, Arizona, USA

description: 1) Spreadsheet with cross-set thickness measurements from the Page Sandstone, Arizona, USA.
DOI: 10.22002/d1.1270
title: Raman and X-Ray Diffraction Data for Acetylene Clathrate

description: Data behind figures for J. Phys. Chem. A 2019, 123, 7051-7056
description: Related Publication:
Raman Signatures and Thermal Expansivity of Acetylene Clathrate Hydrate

Tuan H. Vu, Robert Hodyss, Morgan L. Cable, Mathieu Choukroun Caltech / JPL

The Journal of Physical Chemistry A

2019-07-16

https://doi.org/10.1021/acs.jpca.9b04426
eng
DOI: 10.22002/d1.1264
title: Analysis of the number of zeros in scRNA-seq data

description: This contains several scRNA-seq datasets in H5AD format and notebook for generating analysis results and figures regarding the number of zeros in scRNA-seq data.
DOI: 10.22002/d1.1262
title: Transient Grating of Rolled Polyethylene Films

description: Each text file includes meta data at the beginning. PM Period and grating periods are in microns. dt is the time step in microseconds.

Data follows this section. The data is the raw data plus a constant that brings the data near 0 (The raw data can have large voltage offsets from 0 due to the detector used).
The data is broken up into numerous measurements at + and - heterodyne phases. Each data set is preceded by the phase of the data.
Note, the data is in mV, though the magnitude is not important for interpreting the results.

For help in interpreting the raw data, please contact the authors.
DOI: 10.22002/d1.1256
title: Summary tables for 2019 release of JCAP Materials Experiment and Analysis Database

description: Plate.csv containing 1 row for each plate and composition.csv containing 1 row for each composition sample described in the seminal public release of the  JCAP Materials Experiment and Analysis Database, described in publication "Tracking materials science data lineage to manage millions of materials experiments and analyses", doi: 10.1038/s41524-019-0216-x with web interface hosted at https://htejcap.org or https://doi.org/10.25989/es8t-kswe
DOI: 10.22002/d1.1246
title: Biological Responses to Therapeutic Treatments of Human Vascular Diseases

description: Supplementary to thesis: Biological Responses to Therapeutic Treatments of Human Vascular Diseases
DOI: 10.22002/d1.1245
title: Detrital zircon ages of Sespe Formation orthoquartzites

description: Detrital zircon ages from orthoquartzite clasts in the Sespe Formation
description: Related Publication:
Grand Canyon provenance for orthoquartzite clasts in the  lower Miocene of coastal southern California

Sabbeth, Leah Caltech

Geosphere
eng
DOI: 10.22002/d1.1244
title: Anisotropy of the effective toughness of layered media

description: We use the variational phase-field model and the surfing boundary condition to propagate a crack macroscopically in various layered materials. We study two idealized situations, the first where the elastic modulus is uniform while the toughness alternates and a second where the toughness is uniform and elastic modulus alternates. We find that in the first case of toughness heterogeneity the effective toughness displays 'anomalous isotropy' in that it is independent of propagation direction and equal to that of the tougher material except when the crack propagation is parallel to the layers. In the second case of elastic heterogeneity, we find the behavior more anisotropic and consistent with the toughening effects of stress fluctuation and need for crack renucleation at the compliant to stiff interface. In both cases, the effective toughness is not convex in the sense of interfacial energy or Wulff shape reflecting the fact that crack propagation follows a critical path. Further, in both cases the crack path is not straight and consistent with a maximal dissipation principle. Finally, the effective toughness depends on the contrast and pinning, rather than the extent of crack fluctuation.

The sources files of the performed simulations are provided.
description: Related Publication:
Anisotropy of the effective toughness of layered media

Stella Brach California Institute of Technology

Zubaer Hossain University of Delaware

Blaise Bourdin Louisiana State University

Kaushik Bhattacharya California Institute of Technology

 Journal of the Mechanics and Physics of Solids
eng
DOI: 10.22002/d1.1237
title: Western Pacific Model Subduction Zones

description: netCDF files for cross sections in the western Pacific through spherical models of plate tectonics and mantle convection
description: Related Publication:
Slab horizontal subduction and slab tearing beneath East Asia

Ma, Pengfei China University of Geosciences (Beijing)

Liu, Shaofeng China University of Geosciences (Beijing)

Gurnis, Michael Caltech

Zhang, Bo China University of Geosciences (Beijing)

Geophysical Research Letters

https://doi.org/10.1029/2018GL081703
eng
DOI: 10.22002/d1.1230
title: Persistence of neuronal representations through time and damage in the hippocampus

description: MATLAB scripts and design files for the project described in ...
DOI: 10.22002/d1.1228
title: Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli

description: This contains tidy csv files of flow cytometry data from the biorxiv preprint:
'Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli' (https://www.biorxiv.org/content/10.1101/614529v1). Code for analysis of flow cytometry data can be found on the Github repository: https://github.com/rlwillia/Integrase-differentiation
DOI: 10.22002/d1.1227
title: Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli

description: This contains .csv files of flow cytometry data used for the generation of figures in the biorxiv 'Tunable integrase-mediated differentiation facilitates improved output of burdensome functions in E. coli'. Additionally this contains code used to analyze/generate figures from the data, and to model the circuit architectures proposed. All information here with the exception of flow cytometry data is available at: https://github.com/rlwillia/Integrase-differentiation.
DOI: 10.22002/d1.1226
title: Chlorophyll fluorescence spectra for a wide range of species and conditions

description: 5 individual datasets are provided to accompany the following article:

Troy S. Magney,  Christian Frankenberg,  Philipp Kӧhler,  Gretchen North,  Thomas S. Davis,  Christian Dold,  Debsunder Dutta,  Joshua B. Fisher,  Katja Grossmann,  Alexis Harrington,  Jerry Hatfield,  Jochen Stutz,  Ying Sun,  Albert Porcar‐Castell. Accepted online May 7 2019. Disentangling controls on the spectral shape of chlorophyll fluorescence: Implications for remote sensing of photosynthesis. Journal of Geophysical Research-Biogeosciences. doi: 10.1029/2019JG005029

This dataset will provide researchers with steady-state fluorescence spectra for individual leaves across a wide range of species and conditions used in the main figures presented in the paper.

Light response curve information and fluorescence spectra can be found in the data files associated with the Hyytialla and Greenhouse study experiments. Steady-state fluorescence data collected at 600 PAR are provided in the Huntington and LaSelva datasets. Hourly averages for the canopy level data presented in the manuscript at presented in the canopy file. 

More information on the methods can be found in the paper and supplementary information doi: 10.1029/2019JG005029. All data presented in the Supplementary Information can be made available by the authors. Please contact Troy Magney, tmagney@caltech.edu, if you plan to use the data or have any questions.
description: Related Publication:
Disentangling the spectral shape of chlorophyll fluorescence: Implications for remote sensing of photosynthesis

Troy Magney Caltech

Journal of Geophysical Research - Biogeosciences

2019-05-07

https://doi.org/10.1029/2019JG005029
eng
DOI: 10.5281/zenodo.6608699
title: Gravity data used in the paper "Imaging the volcanic structures beneath Gran Canaria Island using new gravity data"

description: This file includes the values of gravity and complete Bouguer gravity anomaly calculated for the land gravity stations in Gran Canaria Island (Canary Islands, Spain). Each station has the corresponding UTM coordinates (Zone 28N) in metres (Datum WGS84). This gravity data set has been used in the paper: Montesinos, F. G., Arnoso, J., Gómez-Ortiz, D., Benavent, M., Blanco-Montenegro, I., Vélez, E., et al. (2022). Imaging the volcanic structures beneath Gran Canaria Island using new gravity data. <em>Journal of Geophysical Research: Solid Earth</em>, 127, e2022JB024863. https://doi.org/10.1029/2022JB024863
DOI: 10.5281/zenodo.6608698
title: Gravity data used in the paper "Imaging the volcanic structures beneath Gran Canaria Island using new gravity data"

description: This file includes the values of gravity and complete Bouguer gravity anomaly calculated for the land gravity stations in Gran Canaria Island (Canary Islands, Spain). Each station has the corresponding UTM coordinates (Zone 28N) in metres (Datum WGS84). This gravity data set has been used in the paper: Montesinos, F. G., Arnoso, J., Gómez-Ortiz, D., Benavent, M., Blanco-Montenegro, I., Vélez, E., et al. (2022). Imaging the volcanic structures beneath Gran Canaria Island using new gravity data. <em>Journal of Geophysical Research: Solid Earth</em>, 127, e2022JB024863. https://doi.org/10.1029/2022JB024863
DOI: 10.6084/m9.figshare.21585684
title: Supplemental Table 1for ECMR revsion.11.14.2022.docx

description: Description and validation of anibodies
DOI: 10.6084/m9.figshare.21585684.v1
title: Supplemental Table 1for ECMR revsion.11.14.2022.docx

description: Description and validation of anibodies
DOI: 10.25810/c862-0e81.55
title: US Television Coverage of Climate Change or Global Warming, 2000-2022 - October 2022

description: The Media and Climate Change Observatory Data monitors 127 sources (across newspapers, radio and TV) in 59 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.22002/d1.1185
title: Channel capacity bootstrap inferences from experimental data for "First-principles prediction of the information processing capacity of a simple genetic circuit."

description: The series of CSVs contain the channel capacity bootstrap estimates for each experimental set used on "First-principles prediction of the information processing capacity of a simple genetic circuit." Each dataset was analyzed twice, one where the expression data matches the inducer concentration at which the cells were grown, and another where the data were shuffled. For more details please see the corresponding website for the article: https://www.rpgroup.caltech.edu/chann_cap/
description: Contact person: Manuel Razo-Mejia mrazomej@caltech.edu
DOI: 10.22002/d1.1183
title: Cell intensities extracted from microscopy images for "First-principles prediction of the information processing capacity of a simple genetic circuit."

description: These data correspond to the single-cell mean intensity values obtained from microscopy images used to quantify fluorescence and compute gene expression distributions due to the activity of the Lac repressor molecule in E. coli cells. This information was used to compute the information processing capacity of the simple repression motif. These data are separated by the operator and repressor copy number we examined. Please see the main text or the paper website at https://mrazomej.github.io/chann_cap/analysis for more information.
description: Contact person: Manuel Razo-Mejia mrazomej@caltech.edu
DOI: 10.6084/m9.figshare.21585690
title: Round 1 - Primary school math scores

description: This data contains math scores of primary school grade 2 students in 2017 in Vietnam.
DOI: 10.6084/m9.figshare.21585690.v1
title: Round 1 - Primary school math scores

description: This data contains math scores of primary school grade 2 students in 2017 in Vietnam.
DOI: 10.22002/d1.1178
title: X-ray Diffraction of Cu-Ca-V oxides

description: Series of XRD patterns collected on a Bruker D8 system using a composition library made by sputter deposition. File format consistent with that described at udiscover.it.
DOI: 10.22002/d1.1170
title: Large shallow earthquakes during the period 1904-1980

description: In order to obtain a uniform magnitude catalogue, surface-wave magnitudes M_s and broad-band body-wave magnitudes m_B have been determined for large shallow earthquakes from 1904 to 1980. In making the catalogue homogeneous, the author consistently adheres to the original definitions of M_s and m_B given by Gutenberg (1945) and Gutenberg and Richter (1956). The determinations of M_s and m_B are all based on the amplitude and period data listed in Gutenberg and Richter's unpublished notes, bulletins from stations worldwide, and other basic information. M_B is measured on broad-band instruments in periods of ∼8 s. Consistency of the magnitude determinations from these different sources is carefully checked in detail. More than 900 shallow shocks of magnitude 7 and over are catalogued. The meaning of the magnitude scales in various catalogues is examined in terms of M_s and m_B. Most of the magnitudes listed by Gutenberg and Richter (1954) in their "Seismicity of the Earth" are basically M_s for large shocks shallower than 40 km, but are basically m_B for large shocks at depths of 40–60 km. The surface-wave magnitudes given by "Earthquake Data Reports" are higher than M_s by 0.2 unit whether the combined horizontal amplitude or the vertical amplitude is used. M_B and the currently used 1 s body-wave magnitude are measured at different periods and should not be directly compared.
description: Related Publication:
Magnitudes of large shallow earthquakes from 1904 to 1980

Abe, Katsuyuki Hokkaido University

Physics of the Earth and Planetary Interiors

1981-10-01

https://doi.org/10.1016/0031-9201(81)90088-1
eng
description: Contact person: Diaz, Tony tonyd@caltech.edu
DOI: 10.22002/d1.1152
title: HDF5 file containing images, absorption spectra, composition and annealing parameters for 179072 metal oxides

description: HDF5 file containing optical image, absorption spectrum, composition, and processing record for 179072 different metal oxide samples. Part of this data was used in 10.1039/C8SC03077D see corresponding Data Descriptor
DOI: 10.22002/d1.1154
title: Dataset accompanying "Photometric characterization of Lucideon and Avian Technologies color standards including application for calibration of the Mastcam-Z instrument on the Mars 2020 rover"

description: This data packet contains supplementary figures which
are useful for visualization of the photometric properties of the studied materials. These figures augment those presented in the manuscript but consist of the same data. Figures related to the properties of the detector and white reference used are also included. The raw data from measurements is provided in a spreadsheet for further analysis.
description: Related Publication:
Photometric characterization of Lucideon and Avian Technologies color standards including application for calibration of the Mastcam-Z instrument on the Mars 2020 rover

Jennifer Buz California Institute of Technology

Optical Engineering

2019-02-12

https://doi.org/10.1117/1.OE.58.2.027108
eng