cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1296743
title: Dataset Of The Study On Field Evidence For Manipulation Of Mosquito Host Selection By The Human Malaria Parasite

description: This repository contains the dataset from host preferences assays to determine odour-mediated mosquito host preference as well as mosquito host selection determination through identification of the blood meal origin from indoor-resting blood-fed mosquito females in Burkina Faso.
DOI: 10.5281/zenodo.1296744
title: Dataset Of The Study On Field Evidence For Manipulation Of Mosquito Host Selection By The Human Malaria Parasite

description: This repository contains the dataset from host preferences assays to determine odour-mediated mosquito host preference as well as mosquito host selection determination through identification of the blood meal origin from indoor-resting blood-fed mosquito females in Burkina Faso.
DOI: 10.6073/pasta/17b8aa9048ed5b1ce3d48c60dcc6dd94
title: Ecological Survey of Central Arizona: soil chemistry and soil properties in the greater Phoenix metropolitan area and surrounding Sonoran desert, survey year 2000

description: The Ecological Survey of Central Arizona (ESCA) is an extensive field
  survey and integrated inventory designed to capture key ecological
  indicators of the CAP LTER study area consisting of the urbanized,
  suburbanized, and agricultural areas of metropolitan Phoenix, and the
  surrounding Sonoran desert. The survey is conducted every five years
  at approximately 200 sample plots (30m x 30m) that were located
  randomly using a tessellation-stratified dual-density sampling design.
  Study plots cover habitats throughout the CAP LTER study area ranging
  from native Sonoran desert sites to residential yards to an airport
  tarmac. Measurements include an inventory of all plants (identified to
  the lowest possible taxonomic unit, typically species), plant
  biovolume, soil coring for physicochemical properties, arthropod
  sweep-net sampling, photo documentation, and a visual survey of site
  and area characteristics. The objectives of the survey are to (1)
  characterize patches in terms of key biotic, physical, and chemical
  variables, and (2) examine relationships among land use, general plant
  diversity, native plant diversity, plant biovolume, soil nutrient
  status, and social-economic indices along an indirect urban gradient.

      
  This data set focuses specifically on soil chemistry and soil
  properties assessed during the 2000 survey year. Investigators
  interested in soil data from more recent surveys or other measured
  variables should search the data catalog for 'ecological survey of
  central arizona' or 'survey 200' to locate those and other data
  related to the CAP LTER's ESCA.
DOI: 10.6073/pasta/35d73bcd695879882a48e33f4a315734
title: Aboveground biomass at control and fertilized plots in a Spartina patens-dominated marsh, Rowley River, Plum Island Ecosystem LTER, MA.

description: Aboveground biomass is determined destructively during the growing season at a Spartina patens salt marsh on the Rowley River within the Plum Island Ecosystems (PIE) LTER site.
DOI: 10.5281/zenodo.1169606
title: Single-Cell Rna-Seq Of Breast Cancer Infiltrating T Cells (Case 2)

description: Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 1) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads (this sample was divided into two channels). Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.

This dataset contains the raw .bcl files.
DOI: 10.5281/zenodo.1169607
title: Single-Cell Rna-Seq Of Breast Cancer Infiltrating T Cells (Case 2)

description: Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 1) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads (this sample was divided into two channels). Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.

This dataset contains the raw .bcl files.
DOI: 10.5281/zenodo.1170579
title: Single-Cell Rna-Seq Of Breast Cancer Infiltrating T Cells (Case 1)

description: Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 2) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads. Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.

This dataset contains the raw .bcl files.
DOI: 10.5281/zenodo.1170580
title: Single-Cell Rna-Seq Of Breast Cancer Infiltrating T Cells (Case 1)

description: Single cell suspensions were generated from two individual TNBC primary tumor samples (this entry contains case 2) and the viable cells were FACS sorted for CD3<sup>+</sup> T cells. Sorted cells were then counted and assessed for viability. Single cell library preparation was carried out as per the 10X Genomics Chromium Single cell protocol for the v2 reagent kit (10X Genomics, Pleasanton, CA, USA). Cell suspensions were loaded onto a Chromium Single Cell Chip along with the reverse transcription (RT) mastermix and single cell 3’ gel beads. Following generation of single cell gel bead-in-emulsions (GEMs), reverse transcription was performed using a C1000 Touch Thermal Cycler with a Deep Well Reaction Module (Bio-Rad Laboratories, Hercules, CA, USA). Amplified cDNA was purified using SPRIselect beads (Beckman Coulter, Lane Cove, NSW, Australia) and sheared to approximately 200bp with a Covaris S2 instrument (Covaris, Woburn, MA, USA) using the manufacturer’s recommended parameters. Sequencing libraries were generated with unique sample indices (SI) for each sample. Libraries were sequenced on an Illumina HiSeq 2500 High Output Mode using V4 clustering and sequencing chemistry.

This dataset contains the raw .bcl files.
DOI: 10.17632/f5rc39k9m4.1
title: Irregular Filters for Semi-regular Dubuc-Deslauriers Wavelet Tight Frames

description: We present filters for the irregular framelets of semi-regular Dubuc-Deslauriers 2n-point wavelet tight frames with mesh parameters h_\ell = 1 and h_r &gt; 0 for the cases: n = 2, h_r = 1.5, 2, 2.5, 3 n = 3, h_r = 1.5, 2, 2.25, 2.5 n = 4, h_r = 1.5, 2, 2.15, 2.3 n = 5, h_r = 1.5, 2, 2.1, 2.2 These filters have been computed using the method described in "Semi-regular Dubuc-Deslaurier wavelet tight frames" submitted to Journal of Computational and Applied Mathematics Special Issue for SMART 2017. The filters are the columns of the matrix Q_irr where R_irr = Q_irr * transpose(Q_irr). To avoid numerical fluctuations Q_irr is computed via singular value decomposition, with threshold on the singular values set to 10^-8. The filters depend only on the ratio h_\ell over h_r and, when this ratio is inverted, it is sufficient to flip the filters. Therefore there is no loss of generality in considering h_\ell = 1 and h_r greater than or equal to 1 only. Moreover, for any fixed natural number n and h_\ell = 1, there is an interval of availability for h_r of the form ( 1/c, c ), where h_r = 1 reduces to the regular case. For n = 2, the exact value of c is 3.5 while for the other values of n the approximated values of c are 2.6225, 2.3591 and 2.2346 respectively for n = 3, 4 and 5. For the examples presented we choose two common values of h_r working for all n=2,...,5 and two values specifically chosen for each n spreaded out between 2 and c.
DOI: 10.6073/pasta/69d940f02bb505c7eafac5fb316d3e1e
title: Effects of experimentally altered wolf spider densities and warming on soil microarthropods, litter decomposition, litter N, and soil nutrients near Toolik Field Station, AK in summer 2012

description: Predators can disproportionately impact the structure and function of ecosystems relative to their biomass. These effects may be exacerbated under warming in ecosystems like the Arctic, where the number and diversity of predators are low and small shifts in community interactions can alter carbon cycle feedbacks. Here we show that warming alters the effects of wolf spiders, a dominant tundra predator, on belowground litter decomposition and nutrient dynamics. Specifically, while high densities of wolf spiders result in faster litter decomposition under ambient temperatures, they result instead in slower decomposition under warming. Higher spider densities are also associated with elevated levels of available soil nitrogen, potentially benefitting plant production. Changes in decomposition rates under increased wolf spider densities are accompanied by trends toward fewer fungivorous Collembola under ambient temperatures and more Collembola under warming, suggesting that Collembola mediate the indirect effects of wolf spiders on decomposition. The unexpected reversal of wolf spider effects on Collembola and decomposition suggests that in some cases, warming does not simply alter the strength of top-down effects but instead induces a different trophic cascade altogether. Our results indicate that climate change-induced effects on predators can cascade through other trophic levels, alter critical ecosystem functions, and potentially lead to climate feedbacks with important global implications. Moreover, given the expected increase in wolf spider densities with climate change, our findings suggest that the observed cascading effects of this common predator on detrital processes could potentially buffer concurrent changes in decomposition rates.
DOI: 10.5281/zenodo.1045412
title: Miraheze User Survey 2017

description: Miraheze[1]'s 2017 user survey data.

Data gathered by the survey link displayed on every visit. Questions are included in the file.

 

[1]: https://meta.miraheze.org
DOI: 10.5281/zenodo.1045413
title: Miraheze User Survey 2017

description: Miraheze[1]'s 2017 user survey data.

Data gathered by the survey link displayed on every visit. Questions are included in the file.

 

[1]: https://meta.miraheze.org
DOI: 10.5281/zenodo.1207237
title: Simulated Rna-Seq Datasets

description: <strong>The repository contains a simulated RNA-Seq experiment of Saccharomyces cerevisiae. </strong>

 

<strong>NCBI Repository</strong>

ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_genbank/Fungi/Saccharomyces_cerevisiae_uid128/

<strong>Sequencing Simulator <em>ART</em></strong>

https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm

<strong>RNA-Seq Experiment Simulator <em>Polyester</em></strong>

https://github.com/alyssafrazee/polyester

https://academic.oup.com/bioinformatics/article/31/17/2778/183245
DOI: 10.5281/zenodo.1207238
title: Simulated Rna-Seq Datasets

description: <strong>The repository contains a simulated RNA-Seq experiment of Saccharomyces cerevisiae. </strong>

 

<strong>NCBI Repository</strong>

ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_genbank/Fungi/Saccharomyces_cerevisiae_uid128/

<strong>Sequencing Simulator <em>ART</em></strong>

https://www.niehs.nih.gov/research/resources/software/biostatistics/art/index.cfm

<strong>RNA-Seq Experiment Simulator <em>Polyester</em></strong>

https://github.com/alyssafrazee/polyester

https://academic.oup.com/bioinformatics/article/31/17/2778/183245
DOI: 10.17632/ryjz6dr3cw.1
title: Data for: The relationship between technology investment and productivity of courts in Brazil
DOI: 10.5281/zenodo.1297191
title: Simulated Paired-End Reads For Sample 1 (Uniform)

description: Simulated paired-end reads for sample 1 (uniform coverage version) of Swimming Downstream
DOI: 10.5281/zenodo.1297192
title: Simulated Paired-End Reads For Sample 1 (Uniform)

description: Simulated paired-end reads for sample 1 (uniform coverage version) of Swimming Downstream
DOI: 10.5281/zenodo.1297221
title: Data_Mengxiaozhao_For_Radioscience

description: 1. for Figure 3,4,5

a. 'Ground Attention.mat' —— The data of ground wave attenuation<br>
[<br>
    f0 —— four frequency<br>
    L —— the ground distance<br>
    Attenuation: 501*4 —— the ground wave attenuation for four different frequency<br>
]

b. 'Skywave Attention.mat' —— The data of skywave attenuation<br>
[<br>
    f0 —— four frequency<br>
    L  —— the ground distance<br>
    attenuation: 34*4 —— the skywave attenuation for four different frequency<br>
]

c. 'Path attenuation of 5Mhz.mat' —— four paths' attenuation of 5Mhz<br>
[<br>
    L —— Ground distance<br>
    path1 —— the attenuation of path 1<br>
    path23 —— the attenuation of path 2&3<br>
    path4 —— the attenuation of path4<br>
]

<br>
2. for Figure 9 - simulation result

a. 'simulation_echoes data.mat' —— the data of simulation targets' echoes

b. 'Figure9_data.mat' —— the simulation results<br>
[<br>
    data —— Doppler*Range<br>
    Doppler —— the axis of Doppler <br>
    Range —— the axisof Range <br>
]

3. for Figure 11,12,13 - actual data processing results. We give 5 batches of echoes' data and the final result of Figure 9.

a. 'TCDat1.mat','TCDat2.mat','TCDat3.mat','TCDat4.mat','TCDat5.mat',<br>
—— the echoes' data

b. 'Figure11_data.mat' —— the final result of Figure 9. <br>
[<br>
    data ——Doppler*Range<br>
    axist_Doppler —— the axisof Doppler<br>
    axist_Range —— the axisof Range<br>
    counT —— the number of detections<br>
    mTgt —— the parameters of detections<br>
]

4. 'parameters.txt' —— the parameters of simulation data and actual data

<br>
DOI: 10.5281/zenodo.1297222
title: Data_Mengxiaozhao_For_Radioscience

description: 1. for Figure 3,4,5

a. 'Ground Attention.mat' —— The data of ground wave attenuation<br>
[<br>
    f0 —— four frequency<br>
    L —— the ground distance<br>
    Attenuation: 501*4 —— the ground wave attenuation for four different frequency<br>
]

b. 'Skywave Attention.mat' —— The data of skywave attenuation<br>
[<br>
    f0 —— four frequency<br>
    L  —— the ground distance<br>
    attenuation: 34*4 —— the skywave attenuation for four different frequency<br>
]

c. 'Path attenuation of 5Mhz.mat' —— four paths' attenuation of 5Mhz<br>
[<br>
    L —— Ground distance<br>
    path1 —— the attenuation of path 1<br>
    path23 —— the attenuation of path 2&3<br>
    path4 —— the attenuation of path4<br>
]

<br>
2. for Figure 9 - simulation result

a. 'simulation_echoes data.mat' —— the data of simulation targets' echoes

b. 'Figure9_data.mat' —— the simulation results<br>
[<br>
    data —— Doppler*Range<br>
    Doppler —— the axis of Doppler <br>
    Range —— the axisof Range <br>
]

3. for Figure 11,12,13 - actual data processing results. We give 5 batches of echoes' data and the final result of Figure 9.

a. 'TCDat1.mat','TCDat2.mat','TCDat3.mat','TCDat4.mat','TCDat5.mat',<br>
—— the echoes' data

b. 'Figure11_data.mat' —— the final result of Figure 9. <br>
[<br>
    data ——Doppler*Range<br>
    axist_Doppler —— the axisof Doppler<br>
    axist_Range —— the axisof Range<br>
    counT —— the number of detections<br>
    mTgt —— the parameters of detections<br>
]

4. 'parameters.txt' —— the parameters of simulation data and actual data

<br>
DOI: 10.5281/zenodo.1297036
title: Systematic Review Screening Record & Analysis

description: Chapter 2 Systematic review of solution options to the key environmental impacts of tidal lagoons data screening record and analysis.
DOI: 10.5281/zenodo.1297037
title: Systematic Review Screening Record & Analysis

description: Chapter 2 Systematic review of solution options to the key environmental impacts of tidal lagoons data screening record and analysis.
DOI: 10.15151/esrf-es-105805374
title: IBS BAG
DOI: 10.17632/59fwj9y247.1
title: Data on a survey conducted with farmers on lameness in cows in grazing dairy farms visited twice in Brazil, 2015

description: The dataset is the result of a cross-sectional survey conducted with farmers in small-scale grazing dairy herds in Brazil. All the farms (n = 44) were visited twice in 2015. We applied a questionnaire on a common health and welfare issue in dairy cattle worldwide: lameness (abnormal locomotion). In addition, a trained veterinarian in gait scoring assessed the locomotion of all the lactating cows at the farms. The main interest we had with the present research was to know how much the farmers knew about lameness in dairy cows, what was the relative importance of lameness within the dairy herd common health issues, how aware the farmers were regarding the occurrence of this problem, and what preventative measures were used at the farms. We found that lameness was a common issue at the visited farms and also that farmers found lameness a secondary health problem at their farms. The farmers made estimates of lameness prevalence that were lower than the veterinarian's estimates. The farmers did not practice commonly preventative measures to avoid the occurrence of lameness. This information is important in order to design preventative veterinary approach in small-scale dairy farms in Brazil and may be useful to think on building population medicine strategies in small-scale dairy farms in another countries. Altogether the information is a good evidence that the control and prevention animal health issues require more than technical solutions: also, human perspectives should be considered.
DOI: 10.17632/w5h2jb2g29.1
title: Formation of trihalomethanes during chlorination of water and wastewater effluents and the role of precursors

description: 1. Excel files (breakpoint chlorination of samples and effect of dose, bromide ion, contact time and pH on THM formation) 2. THM formation in various fractions of water and wastewater 3. EEM spectra for water and wastewater samples
DOI: 10.17632/php3pwnsmk.1
title: MISOAC-AF_MI_1

description: Database and relevant Syntax code, used to reproduce study's results
DOI: 10.17632/v9r5pkwkyg.1
title: LORENZATI - Doctoral thesis_Appendix

description: The data provides the detailed steps for the uncertainty evaluation of the Super Insulating Materials thermal conductivity (and linear thermal transmittance in case of Vaccum Insulation Panels assemblies), with all the considered uncertainty contributions.
DOI: 10.17632/972jj4j4fs.1
title: Projects P1-P5 Dev. Effort

description: Projects P1-P5 Dev. Effort Fields: Project:Identification, matching paper page 14; Project Name: As recorded From: Initial day To: Final day Days: Number of days considered #Person: Number of Persons Person: SD1-SD4* Days Person: Days x #Person Total Days: Sum of Days Hours: Working hours a day Total Hours: Days x Hours * Real names ommitted for confidentiality. Paper 1st author is SD4.
DOI: 10.17632/9m7m347bzp.1
title: MRE Forecast (math projection)

description: MRE Forecast Fields: Year: 1 to 11, considering 10 years between the first and the last measurement. Project: P1 to P10 Estimated: All projects of same size, 100 hours. Real: Hipotetical real effort Deviation: Real - Estimated Error: Absolute Deviation MRE: Absolute of (Real-Estimated)/Estimated Avg. Estimated: Average of Estimated StdDev. Error: Standard Deviation of MRE Margin of Error: Avg. Estimated + StdDev. Error.
DOI: 10.17632/rwk5484pct.1
title: Field study on perceived control and intraocular pressure - Optica Universitaria 2016

description: This is the data matrix that includes raw data and generated variables from a flied study devoted to ascertain the porported effect of perceived control on intraocular pressure
DOI: 10.17632/yt59mwxp4y.1
title: Ingeniería Matemática y Computación EJVQ

description: Esta librería bibliográfica pretende sustentar las necesidades de investigación de las Ciencias Matemáticas y Ciencias de la Computación de forma combinada, a fin de establecer las potencialidades del uso de algortimos computacionales aplicados con base en conceptos y fundamentos teóricos matemáticos.
DOI: 10.5281/zenodo.1297474
title: Costa Rica Friction Experiments

description: Hydrothermal rotary shear experiments at low sliding velocities relevant for earthquake nucleation (0.001-0.1 mm/s) on IODP samples collected offshore Costa Rica during Exp 334 + 344. Records of apparent friction coefficient vs. displacement and RSF inversion (XLook) results.
DOI: 10.5281/zenodo.1297475
title: Costa Rica Friction Experiments

description: Hydrothermal rotary shear experiments at low sliding velocities relevant for earthquake nucleation (0.001-0.1 mm/s) on IODP samples collected offshore Costa Rica during Exp 334 + 344. Records of apparent friction coefficient vs. displacement and RSF inversion (XLook) results.