cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.sm0kk00/1
title: Metadata and Supplemental Data Sheets A, B, C, D, and E

description: Excel file containing metadata and five sheets of supplementary data. Includes lists for species and operational taxonomic units (OTUs), their sequences and GenBank accession numbers, placement in minor and major clades referenced in the manuscript, and raw quantitative data. The final sheet is a list of detailed data for mushroom voucher specimens and observations.
DOI: 10.5061/dryad.sm0kk00/2
title: Metadata and Supplemental Data Sheets A, B, C, D, and E

description: Zipped collection of six CSV files: metadata and five sheets of supplementary data. Includes lists for species and operational taxonomic units (OTUs), their sequences and GenBank accession numbers, placement in minor and major clades referenced in the manuscript, and raw quantitative data. The final sheet is a list of detailed data for mushroom voucher specimens and observations.
DOI: 10.5061/dryad.tj1p3.1/10.1
title: Photographs_of_Plants_Used_in_this_Study

description: All 52 species, except Tectona and three outgroups (Aureolaria, Paulownia, Petrea), were kept in a common greenhouse room at the University of Florida with air-conditioning and sampled within a period of six months (July 2015-January 2016). Most plants were sampled between 10:00 AM and 1:00 PM. Mean temperature inside the greenhouse room was 76°F (67–81°F) and mean humidity was 62% (49–75%). All plants were at an adult stage and the majority were at the vegetative stage (i.e., not flowering) when sampled (see Dataset 1 for details). With the exception of four species with limited plant material, fully expanded young leaves were preferentially sampled from a single individual; however, older leaves had to be sampled, especially for species with smaller leaves, to fulfill the total amount of material needed to distribute to perform metabolite profiling and transcriptome sequencing. Photographs were taken on the day of sampling.
DOI: 10.5061/dryad.tj1p3.1/11.1
title: dryad_files_master_readme_v2.rtf

description: Readme
DOI: 10.5061/dryad.tj1p3.1/3.1
title: GC-MS chromatograms of 52 Lamiales species.pdf

description: GC-MS data from all 52 species (PDF file).
DOI: 10.5061/dryad.tj1p3.1/4.1
title: LC-MS data of 52 Lamiales species.zip

description: LC-MS data from all 52 species (Zipped folder).
DOI: 10.5061/dryad.tj1p3.1/6.1
title: Predicted CDS of all 52 Lamiales species.zip

description: TransDecoder-predicted CDS sequences of all 52 species generated in this study (Zipped folder).
DOI: 10.5061/dryad.tj1p3.1/7.1
title: Predicted peptides of all 52 Lamiales species.zip

description: TransDecoder-predicted peptide sequences of all 52 species generated in this study (Zipped folder).
DOI: 10.5061/dryad.tj1p3.1/8.1
title: Transcriptomes of all 52 Lamiales species.zip

description: Transcriptomes of all 52 species generated in this study (Zipped folder).
DOI: 10.17632/2n2xsz4gr4.1
title: Data for: Watch and listen – a cross-cultural study of audio-visual-matching behavior in 4.5-month-old infants in German and Swedish talking faces

description: SPSS-dataset of the gaze data of the 4.5-month-old German and Swedish infants in our cross-cultural eye-tracking study
DOI: 10.17632/2sy7knmpns.1
title: Data for: 3266855
DOI: 10.17632/5sxfpyzmx4.1
title: Data for: Distribution of PI-RADS Score and Diagnostic Accuracy of MRI-targeted Biopsy: Comparison of an Asian and European Cohort

description: Distribution of PI-RADS Score and Diagnostic Accuracy of MRI-targeted Biopsy: Comparison of an Asian and European Cohort
DOI: 10.17632/dpc2xrg755.1
title: Data for: A Hybrid Embedded Discrete Fracture Model for Simulating Tight Porous Media with Complex Fracture Systems

description: The data shows the oil production rate of three different hybrid models:EDFM+DP considering pseudo-steady-state transfer;EDFM+DP considering transient transfer;EDFM+MINC. The data makes scholars understand the difference among different models and the EDFM+DP considering pseudo-steady-state transfer is not reasonable for tight oil reserviors.
DOI: 10.17632/y8cx7vcdps.1
title: Data for: Urbanization and livestock density are determinants in the exposure to anticoagulant rodenticides of non-target wildlife

description: Database of the analysis of anticoagulant rodenticides in wildlife from Aragón (NE Spain) with habitat information.
DOI: 10.5061/dryad.1mn51s6/1
title: Supplement 1. Binnedalen range chart

description: Micropalaeontological and micro-biofacies distribution chart for the Binnedalen section, Hopen. Microfossil occurrences marked with an asterisk were previously reported in Paterson et al. (2016). Relative abundances of palynomorph groups are based on Paterson & Mangerud (2015). Sedimentary log after Mørk et al. (2013).
DOI: 10.5061/dryad.1mn51s6/2
title: Supplement 2. Lyngefjellet range chart

description: Micropalaeontological and micro-biofacies distribution chart for the Lyngefjellet section. Microfossil occurrences marked with an asterisk were previously reported in Paterson et al. (2016). Relative abundances of palynomorph groups are based on Paterson & Mangerud (2015). Sedimentary log after Mørk et al. (2013).
DOI: 10.5061/dryad.1mn51s6/3
title: Supplement 3. Blåfjell range chart

description: Micropalaeontological and micro-biofacies distribution chart for the Blåfjell section. Microfossil occurrences marked with an asterisk were previously reported in Paterson et al. (2016). Relative abundances of palynomorph groups are based on Paterson & Mangerud (2015). Sedimentary log after Mørk et al. (2013).
DOI: 10.5061/dryad.1mn51s6/4
title: Supplement 4. Gåskaret range chart

description: Micropalaeontological and micro-biofacies distribution chart for the Gåskaret section. Microfossil occurrences marked with an asterisk were previously reported in Paterson et al. (2016). Relative abundances of palynomorph groups are based on Paterson & Mangerud (2015). Sedimentary log after Mørk et al. (2013).
DOI: 10.5061/dryad.1mn51s6/5
title: Supplement 5. Iversenfjellet range chart

description: Micropalaeontological and micro-biofacies distribution chart for the Iversenfjellet section. Microfossil occurrences marked
with an asterisk were previously reported in Paterson et al. (2016). Relative abundances of palynomorph groups are based on Paterson & Mangerud (2015). Sedimentary
log after Mørk et al. (2013).
DOI: 10.5061/dryad.1mn51s6/6
title: Supplement 6. List of specimens

description: List of figured megaspore and microspore specimens from Hopen with sample heights, localities, Palaeontological Museum Oslo numbers and England Finder slide coordinates.
DOI: 10.5061/dryad.1mn51s6/7
title: Supplement 7. SEM stub map

description: SEM stub map showing the position of megaspore specimens illustrated in Paterson et al. (2018, FIG. 9). SEM stubs curated by the Natural History Museum, Oslo, Norway.
DOI: 10.5061/dryad.1s15v5b/1
title: Data from: Long-term avian influenza virus epidemiology in a small Spanish wetland ecosystem is driven by the breeding Anseriformes community

description: Raw data of the main predictors used, namely the avian community inhabiting Salburua wetland, AIV prevalence and meteorological parameters.
DOI: 10.5061/dryad.2fb68d1/1
title: Kimmittetal-2018_BehavioralData

description: This file includes a summary of all behavioral data for each individual male during the simulated courtship interactions. 

MaleID= This is the unique identification of the focal male; Most males were banded with USFWS silver bands with a 9 digit number. A few males were unbanded (UB) and one male was not identified fully but was color-banded (red o s). We are certain that each of these males was a unique male based on their territory location. 

Date= Date of the trial 

Julian= A Julian date of the trial 

TapeNo= These are the names of the unique playback tapes used in each trial. Explanation of how the tapes were created is included in the Methods section. 

LureSubsp= The subspecies of the female stimulus

LureID= The number assigned to each female stimulus. Females were color banded so that we could identify each female. 

LRS= The number of long-range songs performed by each male during the trial

SRS= The duration of short-range song performed by each male during the trial

TS= The amount of time that the male spent spreading his tail feathers during the trial

PT= The amount of time the male spent with his body feather erect (ptiloerection) during the trial

WIN5= The amount of time the male spent within 5 meters of the female stimulus during the trial

CA= The closest the male approached the female stimulus
DOI: 10.5061/dryad.2fb68d1/2
title: Kimmittetal-MaleMateChoice-2018

description: This is the R code for the models used in the Kimmitt et al. publication.
DOI: 10.5061/dryad.3q0mk00/1
title: Code for analyzing analytical model and for running simulations
DOI: 10.5061/dryad.4vg4k9h/10
title: mchpv

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/11
title: mcplant

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/4
title: borrero R script - legend

description: Legend R script
DOI: 10.5061/dryad.4vg4k9h/5
title: 4chpv

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/6
title: 4cplant

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/7
title: hpv

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/8
title: littoralis

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.4vg4k9h/9
title: litura

description: input file for statistical analysis (see also file "borrero R script - legend")
DOI: 10.5061/dryad.59kv753/4
title: Experimental Studies Database

description: Data from papers that carried out experiments; not used in the meta-analysis except for calculating weighted mean and CI mentioned in the Discussion
DOI: 10.5061/dryad.5pv4qm3/1
title: Supporting Information  Cambrian petalonamid Stromatoveris phylogenetically links Ediacaran biota to later animals (Hoyal Cuthill and Han)

description: Figs S1-S3, Appendix S1 Phylogenetic character-taxon matrix in nexus file format, Appendix S2 Reconstructed phylogenetic trees in Newick format.
DOI: 10.5061/dryad.8g8r675/1
title: ECE-2018-09-01063-CAPTUREMATRIX

description: The data are a capture matrix with five columns (2 months capture occasions) and 39 rows (individuals). 
Each row is the capture history of one individual.
The numbers code the events: 0=non-detected, 1=detected and assigned to state "Wolf", 2=detected and assigned to state "Hybrid", 3=detected and not assigned to any state ("Uncertain").
The data are coded as if the assignment is performed only once (on first detection) and never again.
DOI: 10.5061/dryad.94jn4t9/10
title: CFD model a2 PART2/7
DOI: 10.5061/dryad.94jn4t9/11
title: CFD model a2 PART3/7
DOI: 10.5061/dryad.94jn4t9/2
title: CFD model a1 PART1/7

description: Ansys 19.0 Workbench project file that contains the model and data for the simulation described in the article as "model a1".Individual data files from time steps, and user-defined function input source files can be found under /dp0/FFF-9/Fluent and /dp0/FFF-10/Fluent.  Zip file, 6.36 GB.
DOI: 10.5061/dryad.94jn4t9/3
title: CFD model a1 PART2/7
DOI: 10.5061/dryad.94jn4t9/4
title: CFD model a1 PART3/7
DOI: 10.5061/dryad.94jn4t9/5
title: CFD model a1 PART4/7
DOI: 10.5061/dryad.94jn4t9/6
title: CFD model a1 PART5/7
DOI: 10.5061/dryad.94jn4t9/7
title: CFD model a1 PART6/7
DOI: 10.5061/dryad.94jn4t9/8
title: CFD model a1 PART7/7
DOI: 10.5061/dryad.94jn4t9/9
title: CFD model a2 PART1/7

description: Ansys 19.0 Workbench project file that contains the model and data for the simulation described in the article as "model a2".Individual data files from time steps, and user-defined function input source files can be found under /dp0/FFF-14/Fluent and /dp0/FFF-15/Fluent. Zip file, 6.63 GB.
DOI: 10.5061/dryad.95fs76f/1
title: Colocalization Distribution Data Analysis Script

description: MATLAB script uses nuclear masks and foci center x,y coordinate data from each channel (results from Foci Detection and Colocalization software) to determine distances of nearest neighbor foci in a second channel from foci in the reference channel and generate distance frequency data.  The script then generates the same number of random x,y points within the nuclear mask as were detected in the second channel.  The distances from the centers of reference channel foci to nearest neighbor random points is then calculated and reported to within a user defined user defined radius  of each reference focus.  The resulting frequency distributions of reference-to-test channel distances and reference-to-random points are compared by the non-parametric Kolmogorov-Smirnov test.  If the test rejects the null hypothesis at 5% significance, the test returns a value of 1, and 0 if the null hypothesis is not rejected.  The test also returns an asymptotic p-value and a list of distances in pixel values which can then be plotted and further analyzed using GraphPad Prism (as it was here) or other data analysis packages.
DOI: 10.5061/dryad.9p1tc81/1
title: Anticlea plant data

description: This spreadsheet presents plant-level data.  Two individual worksheets (each accompanied by legend worksheets) are included. The "plant" worksheet presents variables describing aspects of plant stature, flower and fruit production, fates during hail storm, and female and male reproductive success for all 163 study plants.  The "mating" worksheet identifies the parents of genotyped seeds and the intermate distance if the identity of both parents was known.
DOI: 10.5061/dryad.cs6sj2g/2
title: Information concerning the samples multiplexed in the Ion PGM run

description: This CSV file contains the list of the sample names, PCR names, replicate numbers, the forward and reverse tag sequences, the forward and reverse primer sequences, the gene name and the species name for each of the 415 samples and 5 controls amplified in replicate and multiplexed in the Ion PGM run. Note that 15 samples were also performed twice as replicates for the DNA extraction step.
DOI: 10.5061/dryad.cs6sj2g/3
title: MiSeq raw sequences of the Cytb minibarcode from 400 faecal samples of cats (Felis silvestris catus) from Eastern France

description: This ZIP file contains 1694 FASTQ files of the 4.042.606 paired-end reads (R1: reads 1; R2: reads 2) produced for each faecal samples in replicates using the MiSeq platform. The 847 multiplexed PCR products were indexed using both forward and reverse indices. The list of the 415 multiplexed samples and the 13 negative controls are provided in the following CSV file titled: Information concerning the samples multiplexed in the MiSeq run.
DOI: 10.5061/dryad.cs6sj2g/4
title: Information concerning the samples multiplexed in the MiSeq run

description: This CSV file contains the list of the sample names, PCR names, replicate numbers, dual-index ID, species name and the read 1 and read 2 fatsq file names for each of the 415 samples and 13 controls amplified in replicate and multiplexed in the Ion PGM run. Note that 15 samples were also performed twice as replicates for the DNA extraction step. Note that 15 samples were also performed twice as replicates for the DNA extraction step.
DOI: 10.5061/dryad.cs6sj2g/5
title: Abundance table before data filtering for Ion PGM and MiSeq sequencing

description: This TXT file contains the number of reads for each distinct taxonomic affiliation obtains with the SESAME barcode software using the variant sequences of the Ion PGM and MiSeq runs, and for each sample replicate before data filtering. The thresholds TFA described in the article are provided in the columns C to H. Each sample is described by 12 columns: 6 concern the Ion PGM results (suffix “_I”) and 6 concern the MiSeq results (suffix “_M”). For each sequencing platform, the taxonomic affiliation results of the two PCR replicates are provided for three similarity thresholds: 95%, 98% and 100%. The column “type” indicates the putative origin of the food using the taxonomic identification: prey (Pr) or human-related food (Hf).
DOI: 10.5061/dryad.cs6sj2g/6
title: Occurrence table after data filtering for Ion PGM and MiSeq sequencing

description: This TXT file contains the number of occurrences for each distinct taxonomic affiliation obtains after data filtering using the thresholds TFA describe in the manuscript. The results are provided for both sequencers, Ion PGM (columns with the suffix “Ion”) and MiSeq (columns with the suffix “Mi”), as well as the intra-platform repeatability between PCR replicates (columns with suffix “SumIon” and “SumMi”, “simp” for one positive PCR and “dup” for two positive PCR) and the final occurrences based of the clustering of the four PCR replicates (IonPGM + MiSeq; columns with the suffix “OccDup” = 1 if at least two PCR replicates on four are positives,  “OccSimp” = 1 if at least one PCR replicate on four is positive).
DOI: 10.5061/dryad.gr38v6r/1
title: BackgroundDiskData
DOI: 10.5061/dryad.gr38v6r/2
title: Circle
DOI: 10.5061/dryad.gr38v6r/3
title: GetRGBcombinations
DOI: 10.5061/dryad.gr38v6r/4
title: IshiharaoidAndStimuliReadParams
DOI: 10.5061/dryad.gr38v6r/5
title: IshiharaoidDiskGeneration
DOI: 10.5061/dryad.gr38v6r/6
title: IshiParametersAchromatic
DOI: 10.5061/dryad.gr38v6r/7
title: MakeStimuliOnGrayBackground
DOI: 10.5061/dryad.gr38v6r/8
title: Readme
DOI: 10.5061/dryad.k48p5h9/1
title: PONE-D-18-04265_data
DOI: 10.5061/dryad.kc2vj64/2
title: alam_reads_part2.tar
DOI: 10.5061/dryad.m8q8bn3/1
title: Raw PRESENCE data for PONE-D-18-22682

description: Presence/Absence data for koalas surveyed across 171 sites on the NSW North Coast and Hinterland forests between 2015 and 2017. Also included in the file are data on site and sampling covariates that were used in PRESENCE for occupancy modelling.
DOI: 10.5061/dryad.mt40bc2/1
title: Dettmann_MacFarlane_2018

description: Data from: Trans-species predictors of tree leaf mass, Dettmann, Garret, MacFarlane, Dave.  Contains data on 188 trees sampled within Michigan of varying species of dry leaf mass and relevant variables including DBH, competition, live crown ratio, basal area increment, age, crown area, DLB, and specific gravity of the wood.  If used please cite the original works.
DOI: 10.5061/dryad.pq37vn6/1
title: Household roster data

description: Demographics and social economic information of each household member (limited information is included due to limitation of 3 indirect indentifiers per subject, if more information is needed please contact corresponding author)
DOI: 10.5061/dryad.pq37vn6/2
title: Household assets

description: Reported household assets
DOI: 10.5061/dryad.pq37vn6/3
title: Farn size

description: Total farm size and cropped farm land
DOI: 10.5061/dryad.tk5ts47/1
title: NDVI Data

description: NDVI Data for the three study sites 2012-2014
DOI: 10.5061/dryad.tk5ts47/2
title: Telemetry data file for the individual recorded
DOI: 10.5061/dryad.tk5ts47/3
title: Telemetry data file for the individual recorded
DOI: 10.5061/dryad.v73r8j9/1
title: R scripts for Pierson et al.

description: R scripts for fitting logistic regression, conducting t-tests,  and conducting Fisher's exact tests.
DOI: 10.5061/dryad.v73r8j9/2
title: Pierson et al. data

description: All field collection and behavioral trial data.
DOI: 10.5061/dryad.v73r8j9/3
title: Pierson et al. RAxML output

description: All RAxML output files.
DOI: 10.5061/dryad.v73r8j9/4
title: Pierson et al. ipyrad input and output

description: Input files necessary to replicate ipyrad assembly and relevant ipyrad output files.
DOI: 10.17632/6p55yyz5hn.1
title: Data for: A phase I clinical trial of ruxolitinib in combination with nilotinib in chronic myeloid leukemia patients with molecular evidence of disease

description: Protocol: A phase I study of combination with nilotinib and ruxolitinib in CML patients with evidence of molecular disease
DOI: 10.17632/b6kjnmzrvd.1
title: Data for: Does the Shari’ah Screening Impact the Gold-Stock Nexus? A Sectorial Analysis

description: This data file contains daily values of world Down Jones indices on 10 different sectors from 31/12/2002 to 31/12/2014. In each sector, there is one conventional index and one Islamic corresponding index. The last column shows daily prices of gold collected from the London Bullion Market. All series are in USD.
DOI: 10.17632/bsjr8bhmgj.1
title: Data for: Establishment and validation of a real-time TaqMan fluorescent quantitative RT-PCR assay for the detection of covert mortality virus
DOI: 10.17632/dpsj2tysk2.1
title: Data for: Corrosion Inhibition Behaviour of Sodium Dodecyl Benzene Sulphonate to Brass in Al2O3 Nanofluid and Simulated Cooling Water

description: Corrosion of brass in SCW-Al2O3-SDBS nanofluid and SCW
DOI: 10.17632/ryyxt8jhb8.1
title: Data for: L1 - L2 semantic and syntactic processing: the influence of language proximity

description: This data set includes semantic and syntactic word strings to test L2 Japanese and Italic Indo-European learners of English on their reaction time and accuracy for determining correct and incorrect strings. The syntactic word strings were designed to mirror the semantic strings in terms of the vocabulary used at the 1 thousand frequency band from the British National Corpus.
DOI: 10.5061/dryad.010sq3j/2
title: Rakshit et al._Appendix 1_R1

description: Appendix 1. Tikicopros triassicus igen et isp. nov. Details of the scroll coprolites collected from the Upper Triassic Tiki Formation of India. Colour code follows The Rock Color Chart Committee (1980). Abbreviations used: H, holotype; L, length measured along longitudinal axis; WL, maximum width measured along long axis in transverse section; WS, maximum width measured along short axis in transverse section. Explanation of abbreviations used given in Fig. 3A.
DOI: 10.5061/dryad.0vm264s/1
title: CSV files

description: These are all CSV files associated with this publication; see the associated README text file for detailed description of each data set.
DOI: 10.5061/dryad.0vm264s/2
title: R_scripts

description: These are all R scripts used to analyze data and produce figures for the associated publication. Refer to the associated README file for detailed description of each script.
DOI: 10.5061/dryad.20j465p/1
title: RNAseq CAMA1

description: RNA-seq CAMA1
DOI: 10.5061/dryad.41b5b06/1
title: Curtsdotter_et_al_2018_JAE_CodeAndData

description: The .zip includes the MATLAB code and associated 15-node arthropod food web structure, body mass, and abundance data used to run and solve the inverse problem, as described in the paper: Curtsdotter et al. 2018 Ecosystem function in predator-prey food webs - confronting dynamic models with empirical data Journal of Animal Ecology.
DOI: 10.5061/dryad.48g9f5r/1
title: first_att_09_01.correctedReads.fasta

description: PacBio genomic sequence read data (error corrected) from Cottus rhenanus.
DOI: 10.5061/dryad.48g9f5r/2
title: Cottus rhenanus reference genome, masked with repetitive elements used for masking appended

description: A Cottus rhenanus reference genome assembly (fasta format) masked with a de novo assembly of repetitive elements, which are appended to the data file.