cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/8xh8sx232r.1
title: A combined enteric neuron-gastric tumor organoid reveals metabolic vulnerabilities in gastric cancer

description: Data S1. Focused library CRISPR screen quality and the aberrant splicing events detected upon knockout of the synthetic lethal gene hit MAGOHB in ARHGAP fusion-containing organoids, related to Figure 2.
A, More than 98% of the sgRNAs were detected within a 5-fold range from the mean reads of sgRNAs as highlighted by the shaded areas.
B, Screen data reproducibility between two biological replicates in the focused library screening.
C, Growth competition assay of organoid lines with (GX052-TO and GX121-TO) and without (GX049-TO, GX068-TO, GX069-TO and GX076-TO) ARHGAP fusion gene with MAGOHB knockout. n = 3.
D, GFP disruption percentage of organoids with MAGOHB knockout in terms of doubling frequency (Number of hours post-sgRNA transduction/Doubling time) normalized to safe harbor.
E, RNA-seq and splicing analyses revealed increased alternative splicing events, along with aberrant changes in spliced intron count at the fusion gene upon MAGOHB knockout, indicate its regulatory role in the splicing of CTNND1-ARHGAP26. Number of total differential alternative splicing events including alternative 3’ splice sites (A3SS), alternative 5’ splice sites (A5SS), mutually exclusive exons (MXE), retained introns (RI) and exon skipping (SE) in GX058-TO upon MAGOHB knockout (left panel). Number of differential alternative splicing events identified in CTNND1 and ARHGAP26 sequences in GX058-TO with MAGOHB knockout (right panel).
F, Fold change of spliced intron counts per million between GX058-TO control and its respective CTNND1-ARHGAP26 knockout clone (upper panel) or with MAGOHB knockout (lower panel) at the indicated genomic coordinates. The fusion gene is identified at chr11: 57810223:+chr5: 143014080 by STAR-Fusion. n = 2.
G, Relative fusion fragments per million total RNA-seq fragments (FFPM) of fusion gene knockout and MAGOHB knockout to controls analyzed by STAR-Fusion. n = 2.
H, Knockout of MAGOHB introduced reduction in CTNND1-ARHGAP26 fusion protein expression. The modest decrease in the fusion exon transcript revealed by STAR-Fusion when MAGOHB was knocked out is evident in the reduction of the fusion protein. 
I, Enriched pathways for genes with at least 5 total differential alterative splicing events in GX058-TO with MAGOHB knockout using Hallmark gene sets. n = 2.
J, Enriched pathways of the downregulated genes in MAGOHB knockout organoids compared with control with reference to Hallmark gene sets. n = 2. The growth inhibition brought by MAGOHB knockout could be due to the reduction of the disease fusion protein level and/or the concomitant alternations of gene expressions in additional pathways.
DOI: 10.15468/dl.hqaekx
title: Occurrence Download

description: A dataset containing 9280 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmorchilus strigilatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 9280 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015153-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16745463
title: Supplementary Datasets for "Benchmarking Greenhouse Gas Emissions from U.S. Wastewater Treatment for Targeted Reduction"
DOI: 10.5066/f7qv3jpg
title: Conceptual salt marsh units for wetland synthesis: Edwin B. Forsythe National Wildlife Refuge, New Jersey

description: The salt marsh complex of the Edwin B. Forsythe National Wildlife Refuge (EBFNWR), which spans over Great Bay, Little Egg Harbor, and Barnegat Bay (New Jersey, USA), was delineated to smaller, conceptual marsh units by geoprocessing of surface elevation data. Flow accumulation based on the relative elevation of each location is used to determine the ridge lines that separate each marsh unit while the surface slope is used to automatically assign each unit a drainage point, where water is expected to drain through. Through scientific efforts associated with the Hurricane Sandy Science Plan, the U.S. Geological Survey has started to expand national assessment of coastal change hazards and forecast products to coastal wetlands. The intent is to provide federal, state, and local managers with tools to estimate their vulnerability and ecosystem service potential. For this purpose, the response and resilience of coastal wetlands to both physical factors needs to be assessed in terms of the ensuing change to their vulnerability and ecosystem services. EBFNWR was selected as a pilot study.

Recent research shows that sediment budgets of microtidal marsh complexes on the Atlantic and Pacific coasts of the United States consistently scale with areal unvegetated/vegetated marsh ratio (UVVR) despite differences in sea-level rise, tidal range, elevation, vegetation, and stressors. This highlights UVVR as a broadly applicable indicator of microtidal marsh stability. It is also relatively quicker and less labor intensive compared to quantifying integrative sediment budgets and the associated transport mechanisms that requires extended tidal-timescale observations of sediment transport. UVVR indicates the link between open-water conversion processes and sediment transport, providing consistent results across a geomorphic and climatic spectrum of microtidal marshes, hence can be an independent measure of marsh health. Potentially, tracking future changes to UVVR may allow for widespread mapping of spatially variable vulnerability across microtidal marshes worldwide.
DOI: 10.5281/zenodo.16322241
title: Hamilton Harbour Water Temperatures
DOI: 10.5281/zenodo.16745533
title: Hamilton Harbour Water Temperatures
DOI: 10.17632/v3f8xfcbnn
title: Extracted ERA5 gust data and partial observation data from eastern China

description: This data is extracted from ERA5 gust data and partial observation data from eastern China, covering hourly data from 2013 to 2022. It includes ERA5-extracted UV wind speeds at different altitudes, 10m ground gust wind speeds, and some strong convection indices, as well as corresponding grid point gust observation data (gust).
DOI: 10.17632/v3f8xfcbnn.1
title: Extracted ERA5 gust data and partial observation data from eastern China

description: This data is extracted from ERA5 gust data and partial observation data from eastern China, covering hourly data from 2013 to 2022. It includes ERA5-extracted UV wind speeds at different altitudes, 10m ground gust wind speeds, and some strong convection indices, as well as corresponding grid point gust observation data (gust).
DOI: 10.15468/dl.nyuu9v
title: Occurrence Download

description: A dataset containing 177969 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Living Specimen, Material sample, Material citation)",
 "GadmGid is one of (DEU.1_1, DEU.1.2.1_1, DEU.1.2_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Pieridae, Papilionidae, Nymphalidae, Lycaenidae, Hesperiidae)"
 ]
}

 The dataset includes 177969 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015118-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/y8mhm65jfm
title: Raw Analytical Dataset of V-NIR Spectroscopy, EPMA, and Raman Spectroscopy for NWA 12279 Lunar Meteorite

description: This dataset serves as supplementary material for the manuscript entitled "Lunar spinel-bearing troctolitic anorthosite NWA 12279 meteorite: Linking petrology, mineralogy and spectroscopy" (in preparation for publication). It comprises 11 data tables (Tables S1–S11), containing:
Electron probe microanalyzer (EPMA) composition data of spinel, olivine, pyroxene, and plagioclase in the NWA 12279 lunar meteorite;
Visible-Near-infrared (V-NIR) spectral data of rock profiles;
Raman spectral characterization of spinel, olivine, and pyroxene;
Corresponding EPMA composition-Raman spectroscopy linkage data for these three mineral phases.
DOI: 10.17632/y8mhm65jfm.1
title: Raw Analytical Dataset of V-NIR Spectroscopy, EPMA, and Raman Spectroscopy for NWA 12279 Lunar Meteorite

description: This dataset serves as supplementary material for the manuscript entitled "Lunar spinel-bearing troctolitic anorthosite NWA 12279 meteorite: Linking petrology, mineralogy and spectroscopy" (in preparation for publication). It comprises 11 data tables (Tables S1–S11), containing:
Electron probe microanalyzer (EPMA) composition data of spinel, olivine, pyroxene, and plagioclase in the NWA 12279 lunar meteorite;
Visible-Near-infrared (V-NIR) spectral data of rock profiles;
Raman spectral characterization of spinel, olivine, and pyroxene;
Corresponding EPMA composition-Raman spectroscopy linkage data for these three mineral phases.
DOI: 10.17632/mw67f3sfxz.2
title: Datasets and input files for "Elastic and Viscoelastic Tidal Deformation of Deimos"

description: The datasets supporting this study, including computed displacement and stress fields for both elastic and viscoelastic simulations, are available via a private link.
DOI: 10.17632/ppdscsr7j5.2
title: Instances for the Two-Dimensional guillotine Bounded-Sized Cutting Stock Problem (2D-BSCSP)

description: Full description of instances for the Two-Dimensional guillotine Bounded-Sized Cutting Stock Problem (2D-BSCSP). 

The 2D-BSCSP is a new variant of the 2D-CSP in which stocks of flexible (bounded) sizes are available, as described in the research article titled "A large neighborhood search matheuristic for the two-dimensional guillotine bounded-sized cutting stock problem" (Hadj Salem and Robbes, 2025).
The 2D-BSCSP was formulated as item-based, strip-based, and pattern-based models and solved using a LNS matheuristic.

Two classes of instances were considered: “Small” and “Large”.
- The “Small” class comprises a total of 320 instances, which are divided into two subsets: “Variable-sized plates” and “Bounded-sized plates”.
- The “Large” class comprises only 160 “Bounded-sized plates” instances.

The format of an instance can be defined as follows: PS-%H-%W-N-D-V, where:
- PS : is the “plate shape” H^(ub) × W^(ub), i.e., R means “Rectangular” (500 × 1000);
- %H : is the % of H^(lb) relative to H^(ub) ; 
- %W : is the % of W^(lb) relative to W^(ub) ;
- N : is the number of item types I;
- D : is the total item types' demand, sum ( i∈I) d_i;
- V : is the “version” (seed).

The different characteristics of these instances are detailed in the file “instances_characteristics.csv”.
DOI: 10.15468/dl.anha44
title: Occurrence Download

description: A dataset containing 3629 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "TaxonKey is Ostrinia nubilalis"
 ]
}

 The dataset includes 3629 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015154-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ubh2au
title: Occurrence Download

description: A dataset containing 1092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Myrmornis torquata)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1092 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015157-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw2vus
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dama dama",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015156-250802193616735/datasets/export for details.
DOI: 10.15468/dl.ng4hzq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cobitis crassicauda)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015158-250802193616735/datasets/export for details.
DOI: 10.17632/c2bvs896kv.2
title: Supplementary data of paper "Carbon emissions from forest harvest and fire offset approximately half of carbon sequestration of forestation in China during 1986-2020"

description: This is supplementary data of paper on forest activities and forest fire disturbance in China during 1986-2020, with information such as model parameters. There are two files, namely "Parameters of local special Bookkeeping model1.xlsx" , "Proportion of tree species.xlsx" and "Proportion of plantation function types.xlsx".
DOI: 10.17632/n2y36w2sv9
title: Yambda-5B — A Large-Scale Multi-modal Dataset for Ranking And Retrieval

description: The Yambda-5B dataset is a large-scale open database comprising 4.79 billion user-item interactions collected from 1 million users and spanning 9.39 million tracks. This release contains the 50 million‑event subset.

Each event is time‑stamped (5 s bins) and labelled with an is_organic flag that separates organic discovery from recommendation‑driven actions, enabling counterfactual and causal studies. The package also includes look‑up tables: album_item_mapping.parquet and artist_item_mapping.parquet – link tracks with their albums and artists.

Note: audio‑embedding files are not included in this Figshare release; they remain part of the complete Yambda‑5B dataset on Hugging Face.

The full 5 B‑event version (with embeddings) is hosted on Hugging Face.

All data are released under the Apache License 2.0.
DOI: 10.17632/n2y36w2sv9.1
title: Yambda-5B — A Large-Scale Multi-modal Dataset for Ranking And Retrieval

description: The Yambda-5B dataset is a large-scale open database comprising 4.79 billion user-item interactions collected from 1 million users and spanning 9.39 million tracks. This release contains the 50 million‑event subset.

Each event is time‑stamped (5 s bins) and labelled with an is_organic flag that separates organic discovery from recommendation‑driven actions, enabling counterfactual and causal studies. The package also includes look‑up tables: album_item_mapping.parquet and artist_item_mapping.parquet – link tracks with their albums and artists.

Note: audio‑embedding files are not included in this Figshare release; they remain part of the complete Yambda‑5B dataset on Hugging Face.

The full 5 B‑event version (with embeddings) is hosted on Hugging Face.

All data are released under the Apache License 2.0.
DOI: 10.17632/8vwyvwpwcm.1
title: Enhancing the microstructure and mechanical performance of laser welded aluminum alloy/steel joints by introducing a multi-element interlayer

description: SEM and TEM images of the joint interface and mechanical properties data.
DOI: 10.15468/dl.edeuvy
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADS1837"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015159-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pyknsvm4cr
title: Deep clustering based on deep autoencoder for classifying source samples for aeolian landforms

description: 1. Data Overview
This dataset contains surface sediment samples of four aeolian landforms, namely gobi, mobile sand dunes, dry riverbeds, and Nebkha. Over 40 indicators were analyzed for each sample, and Deep Clustering (DC), a Deep Learning (DL) model, was used to classify the samples of aeolian landforms in the area affected by severe wind erosion in the Qaidam Basin, northwestern China.
2. Data Sources and Collection Methods
All samples were collected at a depth of 0-3 cm below the surface. Each sample consists of 10-20 sub-samples, which were randomly collected from a 10m×10m sampling area. Among them, 14 samples were collected from gobi, 5 from Nebkha, and 10 from mobile dunes. The sediment fraction with a particle size less than 63μm in each sample was tested, and 40 indicators were analyzed using a fully automatic sequential wavelength dispersive X-ray fluorescence spectrometer, including SiO₂, Al₂O₃, Fe₂O₃, MgO, CaO, K₂O, Na₂O, P, S, Cl, Sc, Ti, V, Cr, Mn, Co, Ni, Cu, Zn, As, Br, Rb, Sr, Y, Zr, Nb, Mo, Sn, Sb, Ba, La, Ce, Hf, Ta, W, Pb, Bi, Th, U, F, and Ga.
3. Data Processing and Software 
https://github.com/MASaraji/Deep-clustering-based-on-deep-autoencoder-for-classifying-source-samples-for-aeolian-landforms
4. Data Format and Structure
The data structure is in standard Excel format.
DOI: 10.17632/pyknsvm4cr.1
title: Deep clustering based on deep autoencoder for classifying source samples for aeolian landforms

description: 1. Data Overview
This dataset contains surface sediment samples of four aeolian landforms, namely gobi, mobile sand dunes, dry riverbeds, and Nebkha. Over 40 indicators were analyzed for each sample, and Deep Clustering (DC), a Deep Learning (DL) model, was used to classify the samples of aeolian landforms in the area affected by severe wind erosion in the Qaidam Basin, northwestern China.
2. Data Sources and Collection Methods
All samples were collected at a depth of 0-3 cm below the surface. Each sample consists of 10-20 sub-samples, which were randomly collected from a 10m×10m sampling area. Among them, 14 samples were collected from gobi, 5 from Nebkha, and 10 from mobile dunes. The sediment fraction with a particle size less than 63μm in each sample was tested, and 40 indicators were analyzed using a fully automatic sequential wavelength dispersive X-ray fluorescence spectrometer, including SiO₂, Al₂O₃, Fe₂O₃, MgO, CaO, K₂O, Na₂O, P, S, Cl, Sc, Ti, V, Cr, Mn, Co, Ni, Cu, Zn, As, Br, Rb, Sr, Y, Zr, Nb, Mo, Sn, Sb, Ba, La, Ce, Hf, Ta, W, Pb, Bi, Th, U, F, and Ga.
3. Data Processing and Software 
https://github.com/MASaraji/Deep-clustering-based-on-deep-autoencoder-for-classifying-source-samples-for-aeolian-landforms
4. Data Format and Structure
The data structure is in standard Excel format.
DOI: 10.17632/kg7p5c8m7f.2
title: A study of a pathological role of O-GlcNAcylation-driven TR11B production and function in lung adenocarcinoma.

description: Original images of IB and gel-PCR from this study.
DOI: 10.15468/dl.u9nb4n
title: Occurrence Download

description: A dataset containing 17740 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 acceptedtaxonkey,
 acceptedscientificname,
 countrycode countrycode,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (CAST(occurrence.taxonkey AS INTEGER) = 10713444 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 10713444 OR CAST(occurrence.kingdomkey AS INTEGER) = 10713444 OR CAST(occurrence.phylumkey AS INTEGER) = 10713444 OR CAST(occurrence.classkey AS INTEGER) = 10713444 OR CAST(occurrence.orderkey AS INTEGER) = 10713444 OR CAST(occurrence.familykey AS INTEGER) = 10713444 OR CAST(occurrence.genuskey AS INTEGER) = 10713444 OR CAST(occurrence.specieskey AS INTEGER) = 10713444)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.acceptedtaxonkey IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence.acceptedtaxonkey,
 occurrence.acceptedscientificname,
 occurrence.countrycode

 The dataset's 17740 records were derived from 854 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015126-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eubbec
title: Occurrence Download

description: A dataset listing the 27 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "TaxonKey is Aeschynomene"
 ]
}

 The dataset's 27 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010592-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc894th
title: CCDC 247126: Experimental Crystal Structure Determination

description: Related Article: E.Kh.Lermontova, A.A.Selina, S.S.Karlov, A.V.Churakov, J.A.K.Howard, Yu.F.Oprunenko, M.Yu.Antipin, J.Sundermeyer, G.S.Zaitseva|2006|J.Organomet.Chem.|691|5710|doi:10.1016/j.jorganchem.2006.08.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/f96-zb9-jb4
title: Petunia integrifolia (Hook.) Schinz & Thell.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/l63-ksf-6s1
title: Sphaeranthus steetzii Oliv. & Hiern

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/v35-x01-3vy
title: Chaetocalyx scandens var. pubescens (DC.) Rudd

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc894vj
title: CCDC 247127: Experimental Crystal Structure Determination

description: Related Article: E.Kh.Lermontova, A.A.Selina, S.S.Karlov, A.V.Churakov, J.A.K.Howard, Yu.F.Oprunenko, M.Yu.Antipin, J.Sundermeyer, G.S.Zaitseva|2006|J.Organomet.Chem.|691|5710|doi:10.1016/j.jorganchem.2006.08.011
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.