cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14883503
title: Plasmids as Persistent Genetic Reservoirs of Bacterial Defense Systems in Wastewater Treatment

description: This dataset supports the manuscript entitled "Plasmids as Persistent Genetic Reservoirs of Bacterial Defense Systems in Wastewater Treatment". The files include annotation outputs from multiple tools, used to identify and characterize bacterial defense systems in metagenomic and plasmidomic datasets.

This repository will be updated with a link to the published article once available.
DOI: 10.5281/zenodo.14883504
title: Plasmids as Persistent Genetic Reservoirs of Bacterial Defense Systems in Wastewater Treatment

description: This dataset supports the manuscript entitled "Plasmids as Persistent Genetic Reservoirs of Bacterial Defense Systems in Wastewater Treatment". The files include annotation outputs from multiple tools, used to identify and characterize bacterial defense systems in metagenomic and plasmidomic datasets.

This repository will be updated with a link to the published article once available.
DOI: 10.5281/zenodo.14728158
title: Relating Roman Rings: data, figures and tables

description: This repository contains various data related to my dissertation: 

 

Visser, RM. 2025. Relating Roman Rings. An interdisciplinary study using archaeology, data science and tree rings to understand timber provision in the German Provinces of the Roman Empire. PhD Thesis. Amsterdam: Vrije Universiteit. DOI: https://doi.org/10.5463/thesis.1062.

 

The data consists of





CofechaOutputSiteChronologies.zip: the COFECHA output of site chronologies created. A description how to read these outputs can be found here: https://sheppard.ltrr.arizona.edu/DISC2019/cofecha.txt. See also: Holmes, RL. 1983 Computer-assisted quality control in tree-ring dating and measurement. Tree-Ring Bulletin 43: 69–78. for more explanation.

series_with_series.csv: a table with all comparisons of individual tree-ring series.



The table structure is found in series_with_series.sql with the SQL-statement to create a PostgreSQL-table.



mean_with_mean.csv: a table with all comparisons of individual tree-ring series.



The table structure is found in mean_with_mean.sql with the SQL-statement to create a PostgreSQL-table.



sites_wkt.csv: a table with the coordinates of each site and the number of (dated) samples

site_chronologies_metadata.csv: a table with all site chronologies and the dates and locations

Figures.zip: all figures in the dissertation

Tables.zip: all tables in the dissertation as csv-file


These are part of the appendices of the dissertation, but not all are printed in the book/PDF.
DOI: 10.5281/zenodo.15197652
title: Relating Roman Rings: data, figures and tables

description: This repository contains various data related to my dissertation: 

 

Visser, RM. 2025. Relating Roman Rings. An interdisciplinary study using archaeology, data science and tree rings to understand timber provision in the German Provinces of the Roman Empire. PhD Thesis. Amsterdam: Vrije Universiteit. DOI: https://doi.org/10.5463/thesis.1062.

 

The data consists of





CofechaOutputSiteChronologies.zip: the COFECHA output of site chronologies created. A description how to read these outputs can be found here: https://sheppard.ltrr.arizona.edu/DISC2019/cofecha.txt. See also: Holmes, RL. 1983 Computer-assisted quality control in tree-ring dating and measurement. Tree-Ring Bulletin 43: 69–78. for more explanation.

series_with_series.csv: a table with all comparisons of individual tree-ring series.



The table structure is found in series_with_series.sql with the SQL-statement to create a PostgreSQL-table.



mean_with_mean.csv: a table with all comparisons of individual tree-ring series.



The table structure is found in mean_with_mean.sql with the SQL-statement to create a PostgreSQL-table.



sites_wkt.csv: a table with the coordinates of each site and the number of (dated) samples

site_chronologies_metadata.csv: a table with all site chronologies and the dates and locations

Figures.zip: all figures in the dissertation

Tables.zip: all tables in the dissertation as csv-file


These are part of the appendices of the dissertation, but not all are printed in the book/PDF.
DOI: 10.15468/dl.gu6jy8
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Asia",
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Sarcogyps calvus",
 "Year 1951-2000"
 ]
}

 The dataset includes 541 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021927-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjqcaz
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes aegypti",
 "Country is Grenada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021928-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cypfn5
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ricinus communis",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021929-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.82xdyy
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is Timor-Leste",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021930-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwc6e2
title: Occurrence Download

description: A dataset containing 121968 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana lutea"
 ]
}

 The dataset includes 121968 records from 622 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021838-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16222845
title: NMR characterization data for a thiophenyl-phenyl-bis-azobenzene switch

description: NMR characterization data for 1-phenyl-3-(5-methoxythiophenyl)bisazobenzene.

Data contained:



1H-NMR signal assignment data for all four photoisomers

auxiliary processing scripts used for processing and integrating 1H-NMR spectra series

experimental NMR data (including 1D & 2D data used for 1H-NMR assignment of all four photoisomers; see /data/README.txt)

fits to the thermal relaxation data



using monoexponential fitting

using coupled first-order kinetics



LED emission spectra

T1 relaxation data fitting results
DOI: 10.5281/zenodo.16222847
title: NMR characterization data for a thiophenyl-phenyl-bis-azobenzene switch

description: NMR characterization data for 1-phenyl-3-(5-methoxythiophenyl)bisazobenzene.

Data contained:



1H-NMR signal assignment data for all four photoisomers

auxiliary processing scripts used for processing and integrating 1H-NMR spectra series

experimental NMR data (including 1D & 2D data used for 1H-NMR assignment of all four photoisomers; see /data/README.txt)

fits to the thermal relaxation data



using monoexponential fitting

using coupled first-order kinetics



LED emission spectra

T1 relaxation data fitting results
DOI: 10.5281/zenodo.16269924
title: Dataset for Bioinspired liquid metal based sensing system for compliance detection

description: Dataset for Bioinspired liquid metal based sensing system for compliance detection
DOI: 10.5281/zenodo.16269923
title: Dataset for Bioinspired liquid metal based sensing system for compliance detection

description: Dataset for Bioinspired liquid metal based sensing system for compliance detection
DOI: 10.15468/dl.p9yubq
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana camara",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021931-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x9nwrq
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cryptocarya glauciphylla Elmer"
 ]
}

 The dataset includes 15 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0281928-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nt9drk
title: Occurrence Download

description: A dataset containing 242769 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "not" : {
 "PublishingCountry" : [
 "is Norway"
 ]
 }
 },
 "Country is Svalbard and Jan Mayen"
 ]
}

 The dataset includes 242769 records from 541 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288764-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq55at
title: Occurrence Download

description: A dataset containing 4893 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clostera anachoreta (Denis & Schiffermüller), 1775"
 ]
}

 The dataset includes 4893 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262380-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7kic2
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marmosops bishopi (Pine, 1981)"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010050-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8a56pa
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acipenser baerii Brandt, 1869)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 239 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309381-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uu24hj
title: Occurrence Download

description: A dataset containing 71388 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Guatemala",
 "Country is Belize",
 "Country is Honduras",
 "Country is El Salvador"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Trogoniformes",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 71388 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080698-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s6q2za
title: Occurrence Download

description: A dataset containing 4901414 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves, Tracheophyta, Actinopterygii, Mammalia, Amphibia, Reptilia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry MULTIPOLYGON (((144.622 -38.307, 145.493 -38.307, 145.493 -37.523, 144.622 -37.523, 144.622 -38.307)))"
 ]
}

 The dataset includes 4901414 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267838-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqdayy
title: Occurrence Download

description: A dataset containing 188100 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-0.149 38.70343,0.37482 38.70343,0.37482 39.18824,-0.149 39.18824,-0.149 38.70343))"
 ]
}

 The dataset includes 188100 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292790-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wasrp5
title: Occurrence Download

description: A dataset containing 5556 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ottelia Pers."
 ]
}

 The dataset includes 5556 records from 238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ua2wt
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Pardofelis marmorata (Martin, 1837)"
 ]
}

 The dataset includes 72 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269690-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmsnck
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Youngia bifurcata Babc. & Stebbins"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301287-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.msnquz
title: Occurrence Download

description: A dataset containing 5692882 species occurrences available in GBIF matching the query:
{
 "or" : [
 "DatasetKey is Botanical Museum, Copenhagen. Database of type specimens",
 "DatasetKey is Whale log - observations from ANARE voyages",
 "DatasetKey is FHSM Mammals Collection",
 "DatasetKey is IMOS - Phytoplankton Abundance and Biovolume (CPR), Australia (2007 to present)",
 "DatasetKey is Squid specimens from the 1991/92 V6 AAMBER2 voyage",
 "DatasetKey is BIOLOGICAL SCIENCES DATA",
 "DatasetKey is Geographically tagged INSDC sequences",
 "DatasetKey is Colección de Zoología Invertebrados - Otros invertebrados",
 "DatasetKey is Antarctic Plant Database",
 "DatasetKey is Lund University Biological Museum - Zoological collections (MZLU)",
 "DatasetKey is Squid collection from 1995/96 V4 BROKE",
 "DatasetKey is BCCM/MUCL - (Agro)Industrial Fungi and Yeasts Collection",
 "DatasetKey is Colección Ictiológica del CENPAT-CONICET",
 "DatasetKey is Weddell Seal Sightings, Vestfold Hills, Antarctica",
 "DatasetKey is Herbario, Departamento de Farmacología, Farmacognosia & Botánica, Facultad de Farmacia, Universidad Complutense, Madrid: MAF-Lich",
 "DatasetKey is SOUTHERN OCEAN ISOPODA",
 "DatasetKey is Survey of benthic and other marine invertebrates of Prydz Bay, 1990/91 Voyage 6",
 "DatasetKey is SOMBASE PYCNOGONIDS",
 "DatasetKey is Invertebrates Collection of the Swedish Museum of Natural History",
 "DatasetKey is British Antarctic Survey Argos satellite tracking data",
 "DatasetKey is CAS Invertebrate Zoology (IZ)",
 "DatasetKey is Whale Observations from the British, Australian and New Zealand Antarctic Research Expedition (BANZARE) voyages 1929-30 and 1930-31",
 "DatasetKey is Whale catches in the Southern Ocean",
 "DatasetKey is CM Birds Collection",
 "DatasetKey is SOMBASE BIOCONSTRUCTORS",
 "DatasetKey is Invertebrates (Type Specimens) of the Swedish Museum of Natural History",
 "DatasetKey is SOMBASE",
 "DatasetKey is Weddell Seal census, Vestfold Hills, Antarctica",
 "DatasetKey is Type Localities for organisms and fossils first described from Antarctica",
 "DatasetKey is Culture Collection of Cryophilic Algae"
 ]
}

 The dataset includes 5692882 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010051-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6eut6v
title: Occurrence Download

description: A dataset containing 31822 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trogon personatus Gould, 1842"
 ]
}

 The dataset includes 31822 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400198-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yp3fcv
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Audio",
 "TaxonKey is Primates"
 ]
}

 The dataset includes 523 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0228206-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.itswak
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Issue is Coordinate rounded",
 "Year 2010-2018",
 "TaxonKey is Actinopterygii"
 ]
}

 The dataset includes 407 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010051-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8zj29y
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrochilus acaulis (Lindl.) Kuntze"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0273803-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.barqwy
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutoxeres aquila heterurus Gould, 1868"
 ]
}

 The dataset includes 98 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022567-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dvwzze
title: Occurrence Download

description: A dataset containing 14120192 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apodiformes"
 ]
}

 The dataset includes 14120192 records from 1785 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0218834-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/a5e-5x3-52b
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dlw-laf-nva
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ht2-162-m48
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/n0b-dwh-jnh
title: Aethionema saxatile (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.21233/w3yw-wp71
title: January Cave [EbPp-Vp] vertebrate fauna dataset

description: Raw data for the January Cave [EbPp-Vp] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.3535/98h-s1c-4d0
title: Aethionema saxatile (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jer-pzp-v1d
title: Aethionema saxatile (L.) W. T. Aiton

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/44p-xf0-nr1
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/pxx-ynl-d3e
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/lr6-36v-vk5
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/2d3-42q-7h5
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/sb1-1gp-v50
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/356-q53-wmz
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/6cp-xdr-sf2
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/7xx-c7l-ylf
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zfw-a58-szf
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/scp-y8f-ckk
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vjy-1hz-5lc
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bwd-qz5-4kd
title: Aegilops neglecta Req. ex Bertol.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cej-4x2-z73
title: Clinopodium graveolens (M.Bieb.) Kuntze

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.