cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.2617028
title: Heart Failure eQTLs companion to "Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure"

description: These are the results of a QTL analysis companion to "Pathologic gene network rewiring implicates PPP1R3A as a central cardioprotective factor in pressure overload heart failure". We performed RNA expression measurements and obtained genotype information in genome-wide markers for 313 patients (177 failing hearts , 136 donor, non-failing [control]  hearts) using Affymetrix expression and Affymetrix Human 6.0 respectively.<strong> </strong>Prior to eQTL discovery, we used PEER to find hidden covariates that could confound signals in our data as well as filtering any genotypes with major allele frequencies less than 5%. To test associations between gene expression in each cohort separately, we used QTLTools with an additive model accounting for gender, age, sample site, and the PEER factors as covariates. We corrected for eQTL multiple association testing using a 10000 permutations per locus in a 2 megabase window and a false discovery rate cutoff of 5%. To select the number of PEER factors, we performed the full analysis multiple times from 1 to 15 PEER factors and observed a saturation of new QTLs being discovered when using 10 factors.

Four files are provided, two for each cohort (cases and controls):

- peer_[cases|controls]_nominal.txt: Nominal associations with a p-value threshold of 0.001

- peer_[cases|controls]_permutations_all.significant.txt:  All significant associations detected after the QTLtools permutation test.

The column names are those from QTLtools, in order:

<br>
1. The phenotype ID<br>
2. The chromosome ID of the phenotype<br>
3. The start position of the phenotype<br>
4. The end position of the phenotype<br>
5. The strand orientation of the phenotype<br>
6. The total number of variants tested in cis<br>
7. The distance between the phenotype and the tested variant (accounting for strand orientation)<br>
8. The ID of the tested variant ( in Affy 6.0 SNP ids)<br>
9. The chromosome ID of the variant<br>
10. The start position of the variant<br>
11. The end position of the variant<br>
12. The nominal P-value of association between the variant and the phenotype<br>
13. The corresponding regression slope<br>
14. A binary flag equal to 1 is the variant is the top variant in cis
DOI: 10.17632/r7nr3269w9.2
title: Data for: Distant swells and their impacts on atolls and tropical coastlines. The example of submersions produced by lagoon filling and flushing currents in French Polynesia during 1996 and 2011 mega swells.

description: Swell (Hs, period, azimuth) South of Makemo (17.5 ° S and 144 ° W) between 1979 and 2008. (WW3 forecasting model). Excel
DOI: 10.25345/c51919
title: MassIVE MSV000083641 - Carnitine_Heart_Slices_Negative_Mode_3292019
title: Heart Slices were extracted from mice and examined in negative mode using a C8 column on Q Exactive LCMS untargeted run.
DOI: 10.25345/c5wg8f
title: MassIVE MSV000083642 - Carnitine_Heart_Slices_Positive_Mode_3292019
title: Heart Slices were extracted from mice and examined in positive mode on C8 Column using Q Exactive LCMS untargeted run.
DOI: 10.21227/683z-vg56
title: Self-Writing of Tapered Pillars in UV-Curable Resin for Spot-Size Conversion

description: A new approach for fabricating spot size converters (SSCs), using self-written tapered pillars, is reported. The method uses a UV-curable resin and mask transfer technique in order to fabricate pillar structures. These structures are designed to couple from Si-wire waveguides to silica single mode fiber (SMF).The technique improvises upon classic single shot fabrication, previously reported using an aperture-limited self-written waveguide (SWW) approach. Design optimization of the SSC was inferred through using a beam propagation method (BPM). A prototype of 24 arrayed SSCs with a 250 µm pitched separation was successfully fabricated using a photomask. Measurement of the Near Field Pattern (NFP) and Far Field Pattern (FFP) verified that the arrayed SSCs share similar light propagation characteristics.
DOI: 10.5281/zenodo.2610925
title: Raw diffraction images of Ferroportin homologue (phasing data by Hg-SIRAS)

description: Diffraction images of native and mercury-bound Ferroportin homologue from Bdellovibrio bacteriovorus. This phase information was used for PDB entries 5AYM and 5AYN, and indirectly 5AYO (Taniguchi et al. 2015). All data were collected from loop-harvested crystals on BL32XU, SPring-8 at a wavelength of 1.00000 Å using the MX225HS CCD detector.

From a native crystal, a helical (180°/crystal, 1°/frame) datasets were collected using 12×8 μm<sup>2</sup> beam. From a mercury-derivative crystals, two helical (180°/crystal, 1.5°/frame) datasets were collected using 10×2 μm<sup>2</sup> beam. The crystals belonged to space group <em>P</em>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub> with unit cell parameter a~57, b~86, c~96 Å.
DOI: 10.6073/pasta/4d2bce9e55a60aeda5a5a23914cb82e8
title: Eriophorum vaginatum flowers and mass per tiller in tussock tundra sites along the Dalton Highway, Alaska  2016

description: These measurements repeat the measurements made by Shaver et al. (1986) along the Dalton Highway at some of the same sites.
Shaver, G. R., N. Fetcher, and F. S. Chapin III. 1986. Growth and flowering in Eriophorum vaginatum: Annual and latitudinal variation.  Ecology 67:1524-1535.
DOI: 10.21227/9hd2-c721
title: Self-Writing of Tapered Pillars in UV-Curable Resin for Spot-Size Conversion

description: A new approach for fabricating spot size converters (SSCs), using self-written tapered pillars, is reported. The method uses a UV-curable resin and mask transfer technique in order to fabricate pillar structures. These structures are designed to couple from Si-wire waveguides to silica single mode fiber (SMF).The technique improvises upon classic single shot fabrication, previously reported using an aperture-limited self-written waveguide (SWW) approach. Design optimization of the SSC was inferred through using a beam propagation method (BPM). A prototype of 24 arrayed SSCs with a 250 µm pitched separation was successfully fabricated using a photomask. Measurement of the Near Field Pattern (NFP) and Far Field Pattern (FFP) verified that the arrayed SSCs share similar light propagation characteristics.
DOI: 10.6073/pasta/11a8a171c0a66717e6bf6d292e016eec
title: Litter decomposition from 2014 reciprocal transplant garden Toolik Lake, Coldfoot, and Sagwon, Alaska 2016

description: Data on litter decomposition of Eriophorum vaginatum leaves collected at Toolik Lake, Coldfoot, and Sagwon and distributed to all three sites. Litter bags from the three populations were deployed at CF (8/26/15), TL (8/24/16) and SG (8/25/16) sites approximately 40 m away from the main transplant gardens (east of CF, east of TL and west of SG) into 5 blocks with 4 intended harvests at each plots.
DOI: 10.6073/pasta/6b35a1ee08b9741acad632ddadcdec52
title: Quantum yield of Photosystem II of Eriophorum vaginatum leaves in the reciprocal transplant gardons at Toolik Lake, Coldfoot, and Sagwon- Alaska in 2016

description: Quantum yield of Photosystem II  estimated from chlorophyll fluorescence of Eriophorum vaginatum leaves from tussocks in the reciprocal transplant gardons at Toolik Lake, Coldfoot, and Sagwon in 2016. A single transplant tussock per plot was repeatedly measured through the season.
DOI: 10.5281/zenodo.2610924
title: Raw diffraction images of Ferroportin homologue (phasing data by Hg-SIRAS)

description: Diffraction images of native and mercury-bound Ferroportin homologue from Bdellovibrio bacteriovorus. This phase information was used for PDB entries 5AYM and 5AYN, and indirectly 5AYO (Taniguchi et al. 2015). All data were collected from loop-harvested crystals on BL32XU, SPring-8 at a wavelength of 1.00000 Å using the MX225HS CCD detector.

From a native crystal, a helical (180°/crystal, 1°/frame) datasets were collected using 12×8 μm<sup>2</sup> beam. From a mercury-derivative crystals, two helical (180°/crystal, 1.5°/frame) datasets were collected using 10×2 μm<sup>2</sup> beam. The crystals belonged to space group <em>P</em>2<sub>1</sub>2<sub>1</sub>2<sub>1</sub> with unit cell parameter a~57, b~86, c~96 Å.
DOI: 10.5286/isis.e.rb1820439-2
title: 1820439
DOI: 10.6073/pasta/19127a32eb8ac34277dc42a447b2c30e
title: Ion exchange membrane measure of nutrient availability of the 2015 experimental burn at Toolik Lake Field Station, Alaska 2016

description: An experimental burn conducted in the summer of 2015 to provide sites for an experiment whether seeds of Eriophorum vaginatum from different ecotypes could establish in recently burned areas.  It consisted of ten 2 m X 2 m plots along with a similar number of control plots. There was little seedling establishment but other data were collected on the plots.  Ion exchange membranes were used to measure nutrient availability over two time periods:  Early season (June) and mid season (July).
DOI: 10.6073/pasta/88f7fbd7a0ba46c1e54980448b8db3d2
title: Normalized difference vegetation index and Leaf area index of tussocks from reciprocal transplant gardens at Toolik Lake, Coldfoot, and Sagwon, Alaska 2016

description: Normalized difference vegetation index (NDVI)  and Leaf area index (LAI) data from tussocks in the reciprocal transplant gardens at Toolik Lake, Coldfoot, and Sagwon in 2016.
DOI: 10.6073/pasta/8e48747dc346458ac4207e4b8135a5f6
title: Toolik Lake 2011 common garden leaf length phenology 2015-2016 Alaska

description: Data on Eriophorum vaginatum leaf length collected from a common garden established at Toolik Lake in 2011 with tussocks from No Name Creek, Coldfoot, Eagle Creek, Toolik Lake, Sagwon, and Prudhoe Bay. Data collected during the growing seasons of 2015 and 2016. Results published in Parker, T. C., J. Tang, M. B. Clark, M. M. Moody, and N. Fetcher. 2017. Ecotypic differences in the phenology of the tundra species Eriophorum vaginatum reflect sites of origin. Ecology and Evolution 7: 9775-9786. doi: 10.1002/ece3.3445
DOI: 10.6073/pasta/969a9f6f6edc2807ac29d451c7bc7f5c
title: White spruce trees tagged  measured for total height and girth at 10cm height, and leader length, Coldfoot, Alaska 2015, 2016

description: White spruce seedlings have colonized the site of the Coldfoot transplant garden since the original garden was established in 1982.  Some trees are 2-3 m tall. All seedlings and trees withing the current (2014) garden were tagged, located with GPS, and measured in 2015 and 2016 for total height and girth at 10  cm height. and leader length.
DOI: 10.6073/pasta/fa08636cedf5c32d3c0c9c9cda775d63
title: Absorbed soil nutrients on ion exchange membranes in the reciprocal transplant gardons at Toolik Lake, Coldfoot, and Sagwon in 2016

description: At the reciprocal transplant gardens (CF, TL, SG), ion exchange membranes were used to measure nutrient availability over two time periods: Early season (June) and mid season (July). Membranes were deployed in the field for either 20 or 21 days, depending on travel constraints.
DOI: 10.6073/pasta/213e55b860a8d658988149a38241850c
title: Effects of shading on tundra vegetation senescence at Toolik Lake, Coldfoot, Sagwon - Alaska 2016

description: Data on the effects of shading tundra vegetation from the sun when it is low in on the horizon in the north. If light quality was altered through shading, phenology might be affected. Senescence (color change) was measured for the common tundra species.
DOI: 10.6073/pasta/717bd7ab9ec64e3c2687ed0a835358d1
title: Soil respiration from a mycorrhizal and root exclusion experiment at Toolik Lake Field Station and Anaktuvuk River Burn, Alaska in 2016

description: Organic soil from either the Anaktuvik severe burn or Toolik Lake were collected to test of effect of removal of mycorrhizae on decompositon of tundra at Toolik Lake and the Anaktuvuk Burn IN 2016.
A licor 6400 with 6400-09 soil respiration chamber was used to measure soil respiration (efflux) from the cores on a weekly basis.
DOI: 10.21227/2d1y-2795
title: Self-Writing of Tapered Pillars in UV-Curable Resin for Spot-Size Conversion

description: A new approach for fabricating spot size converters (SSCs), using self-written tapered pillars, is reported. The method uses a UV-curable resin and mask transfer technique in order to fabricate pillar structures. These structures are designed to couple from Si-wire waveguides to silica single mode fiber (SMF).The technique improvises upon classic single shot fabrication, previously reported using an aperture-limited self-written waveguide (SWW) approach. Design optimization of the SSC was inferred through using a beam propagation method (BPM). A prototype of 24 arrayed SSCs with a 250 µm pitched separation was successfully fabricated using a photomask. Measurement of the Near Field Pattern (NFP) and Far Field Pattern (FFP) verified that the arrayed SSCs share similar light propagation characteristics.
DOI: 10.6073/pasta/341b06bdadc7ec12513d2fb438ee229c
title: Effects of 2015 experimental burn on Eriophorum vaginatum at Toolik Lake Field Station, Alaska 2016

description: This was an experimental burn conducted in the summer of 2015 to provide sites for an experiment to see whether seeds of Eriophorum vaginatum from different ecotypes could establish in recently burned areas.  It consisted of ten 2 m X 2 m plots along with a similar number of control plots. There was little seedling establishment but other data have been collected on the plots.
DOI: 10.3886/e109127v1
title: From Data Scarcity to Data Abundance

description: This reflection on the evolution of
methods and data in historical demography argues that we can still find
inspiration and guidance in the work of the founders of our discipline.  Historical demography is in the midst of a
transition from a data-poor to a data-rich environment.  Previous
generations relied on demographic models to squeeze as much information as
possible from the small amounts of data available.  Today we live in a new
era of large data sets and regression models.  Researchers are creating
both regional and international historical data sets of unprecedented size and
depth. When examined closely, however, the methods that we use now make the
same simplifying assumptions that generated the key advances of earlier
generations.  As we transition to new
methods, demographic insight must inform our analyses and enrich our conclusions.

<br><br><br><br><br>
description: These data were collected by John Knodel and used in Knodel, J. E. (1988). Demographic behavior in the past a study of fourteen German village populations in the eighteenth and nineteenth centuries. Cambridge Cambridgeshire, New York: Cambridge University Press.<br><br>
description: Six German village genealogies collected and digitized by John Knodel.
DOI: 10.6073/pasta/7dd9ab3d3870592f8725b8b2e130e094
title: Air and soil temperature in warmed and control plots of 2014 reciprocal transplant gardens Toolik Lake, Coldfoot, and Sagwon, Alaska 2015 and 2016

description: Air and soil temperatures from iButtons located at reciprocal transplant gardens at Toolik Lake, Coldfoot, and Sagwon in 2015 and 2016. The reciprocal transplant gardens at Coldfoot (CF), Toolik Lake (TL), Sagwon (SG) Each plot contains three tussocks, 30-50 cm apart
DOI: 10.25919/5c9e4574bbe4b
title: Parkes observations for project P456 semester 2018OCTS_42

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days at three different wavelengths. With this proposal we aim to maintain our pre-eminent position in the field.

Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.5066/p909ce0w
title: Water level and soil pore water salinity, temperature, and conductivity data in tidally influenced forested wetlands in South Carolina and Georgia

description: Data were collected from coastal wetlands (tidal swamps and marsh) along the Waccamaw and Savannah Rivers in South Carolina and Georgia (See Krauss et al. 2009 for additional details). Data were collected from coastal wetlands (tidal swamps and marsh) along the Waccamaw and Savannah Rivers in South Carolina and Georgia (See Krauss et al. 2009 for additional details). Data collected include water level, porewater salinity (conductivity based), water temperature, and conductivity. First measurements began in 2004 and continued through 2016. Water level data: A network of water level recorders was established in 2004-2006 (forests) and in 2009 (marsh). Continuous hourly data were recorded using vented pressure transducers (model 138, Infinities USA, Port Orange, FL, USA) placed at the bottom of 7.6-cm diameter PVC pipes to an approximate depth of 1 m. All data were collected within the wetland and not in stream. In the data, 0 inches is approximate ground level. Porewater data: Salinity (conductivity based), temperature, and conductivity data were collected monthly from four wells per site. Wells were made of slotted 3.2-cm PVC and inserted into ground to a depth of 0.6 m. Salinity, conductivity, and water temperature were measured with a portable conductivity meter placed inside the well (Model 30, YSI Inc., Yellow Springs, OH, USA ). Wells were capped and were pumped of residual water and allowed to refill prior to measurement. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.
DOI: 10.17632/gystn6d3r4.1
title: Time Series Dataset for Risk Assessment in Supply Chain Networks

description: This dataset is generated via simulation of a probabilistic risk assessment model and a Linear Programming models to evaluate Risk Index and Total supply chain cost using MATLAB simulink. This dataset can be utilized for sequence-to-sequence forecasting and multi-labelled classification problems related to Supply Chain Risk Management (SCRM). This dataset can also be used for evaluating Non-linear Autoregressive models and Deep Neural Networks for supply chain networks. The dataset is published for academic purposes only, with limited usage after careful validation of norms and permissions as stated by the owner.
DOI: 10.17632/kn4636mtvg.2
title: Data from: A High-Resolution Gridded Dataset to Assess Electrification in Sub-Saharan Africa

description: This repository hosts two ncdf4 files containg the data output of the analyis. - One reporting the number of people without access in each grid cell between 2014 and 2018 - The other reporting the estimated consumption tier in each electrified cell in 2018
DOI: 10.21227/hrvx-1z25
title: Footstep analysis using Pressure Sensors

description: The pressure sensors are represented by black circles, which are located in the three zones of each foot. For the left foot: S1 and S2 cover the forefoot area. S3, S4, and S5 the midfoot area. S6 and S7 the rearfoot or heel area. Similarly, for the right foot: S8 and S9 represent the forefoot area. S10, S11, S12 the midfoot area. S13 and S14 the heel area. The values of each sensor are read by the analog inputs of an Arduino mega 2560.
DOI: 10.21979/n9/0675k5/hxzasf
title: Stanley-Baker,2019,Daoyi.instances.in.Kanripo.xlsx

description: All 112 instances where the characters 道 and 醫 are colocated as 道醫 in the pre-modern text corpus Kanripo.org. Each of the instances is examined for sentence structure, and given punctuation. This demonstrates that no instance of the term occurs in the entire collection, indicating that the term 道醫 (the literary Chinese equivalent of the modern concept of Daoist Medicine, 道教醫學), was not an intellectual category in pre-modern China. Kanripo.org is the largest open-access, corpus of scholarly quality transcriptions of pre-modern texts. Each search result links directly to the Kanripo collection, and the primary quotes can be further examined there.
DOI: 10.17632/6t33n6nm96.1
title: CTCF binding controls imprinted gene expression at the Dlk1-Dio3 and Igf2-H19 domains by structuring allele-specific sub-TAD organisation
DOI: 10.17632/bpddf39mf2.1
title: Data for: Needy boarding patients in emergency departments: An exploratory case study using discrete-event simulation

description: Performance measures of simulation study; average values and half widths are reported for each performance measure under study.
DOI: 10.21979/n9/0675k5/jwbbqz
title: Daojiao.yixue.articles_CNKI_2019.xls

description: Describes all full-text available journal articles which reference the modern term 道教醫學 in the scholarly journal database, Chinese Journals Online, CNKI.net.  It forms the basis for figure 1 in the article.Downloaded 20 January, 2019.
DOI: 10.25919/5c9e48e463bee
title: Parkes observations for project PX501 semester 2018OCTS_38

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries.  As the observing time has been purchased this proposal (and the related PX500) does not require TAC grading.  The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first (PX500) will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period.  The second type of time (relating to this proposal) will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.17632/mvv9mv66sg.1
title: Data for: High serum adipocyte fatty acid binding protein levels linked with increased aortic arterial stiffness in patients with type 2 diabetes

description: Raw data of the high serum adipocyte fatty acid binding protein levels linked with increased aortic arterial stiffness in patients with type 2 diabetes
DOI: 10.3886/e109128v1
title: The Implications of Reduced Testing for Teacher Accountability

description: Every-grade, every-year testing plays a prominent part in U.S. education policy and research, but the rise of standardized testing has been met with frustration and opposition. In response, policymakers have proposed legislation designed to curb the amount of standardized testing. There is little empirical evidence, however, about the potential impact of these alternate approaches on current evaluation systems. Using data from a large, urban school district, we compare value-added (VA) estimates from every-year, every-grade testing to those from two reduced-testing scenarios. We find marginal changes in the value-added estimates in both approaches relative to more traditional VA estimates. Estimates from annual testing in alternating subjects are slightly less precise but have lower associations with prior student achievement than biennial testing in both subjects. Further, there is significant decrease in the number of teachers for whom scores can be estimated in both approaches, exacerbating long-standing concerns with VA methodology.