cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.785719
title: Gaussian Job Archive for C7H11BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.785720
title: crosspeciesData

description: This is an R-system (www.r-project.org) package that contains 4 human and 1 mouse prostate carcinoma genome-wide expression datasets, and 6 transcriptional interactomes
DOI: 10.6084/m9.figshare.785720.v1
title: crosspeciesData

description: This is an R-system (www.r-project.org) package that contains 4 human and 1 mouse prostate carcinoma genome-wide expression datasets, and 6 transcriptional interactomes
DOI: 10.6084/m9.figshare.785719.v1
title: Gaussian Job Archive for C7H11BrO2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.786543.v18
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.785718.v1
title: ssmarina R-system package

description: This is a package for R-system (www.r-project.org) that implements the master regulator analysis algorithm (marina) and the optimized version for single-sample analysis (ssmarina).
DOI: 10.6084/m9.figshare.786543.v19
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.784984
title: Weighted Flow Accumulation - R Script Test Data

description: Test Data for wfa.R script. requires creating and esri grid from the ascii grid files. Hasn't been extensively tested.
DOI: 10.6084/m9.figshare.784984.v1
title: Weighted Flow Accumulation - R Script Test Data

description: Test Data for wfa.R script. requires creating and esri grid from the ascii grid files. Hasn't been extensively tested.
DOI: 10.6084/m9.figshare.786543.v20
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.784961
title: finanse przedsiębiorstw, zarządzanie zapasami

description: finanse przedsiębiorstw, zarządzanie zapasami
DOI: 10.6084/m9.figshare.784952
title: Finanse Przedsiębiorstw

description: finanse przedsiębiorstw, zarządzanie gotówki
DOI: 10.6084/m9.figshare.784960
title: Jeffrey W Hollister Dissertation Files - Predicting Condition of Small Estuarine Systems along the United States' Atlantic Coast

description: This fileset contains Jeffrey W Hollister's dissertation plus all data files, metadata, and data dictionary associated with that work.
DOI: 10.6084/m9.figshare.784952.v1
title: Finanse Przedsiębiorstw

description: finanse przedsiębiorstw, zarządzanie gotówki
DOI: 10.6084/m9.figshare.784960.v1
title: Jeffrey W Hollister Dissertation Files - Predicting Condition of Small Estuarine Systems along the United States' Atlantic Coast

description: This fileset contains Jeffrey W Hollister's dissertation plus all data files, metadata, and data dictionary associated with that work.
DOI: 10.6084/m9.figshare.786543.v21
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.786543.v22
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.784941
title: Gaussian Job Archive for C144H144

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.784940
title: Gaussian Job Archive for C144H144

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.784941.v1
title: Gaussian Job Archive for C144H144

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.784942
title: blur - camera control software using the GenICam interface

description: blur is a set of programs used by the Mount Erebus Volcano Observatory (MEVO) to control a thermal camera system for year-round monitoring of the Erebus lava lake. Written in a mixture of C and C++, the software uses the open source Aravis library to interface with the thermal camera (which supports the GenICam interface). Although it is designed to run on embedded ARM systems, it will run on any Linux based system. It also includes a real-time image viewer written in Python. See the README file for more details. More details about the software and the camera system that it was designed to run can be found in the article "Autonomous thermal camera system for monitoring the active lava lake at Erebus volcano, Antarctica" published in Geoscientific Instrumentation, Methods and Data Systems (the DOI for this article is in the links below).
DOI: 10.6084/m9.figshare.786543.v23
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.784940.v1
title: Gaussian Job Archive for C144H144

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.783900
title: Absolute Pitch Test

description: Absolute Pitch test online experiment - html currently hosted at www.musicianbrain.com/aptest
DOI: 10.6084/m9.figshare.786543.v24
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.783898
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.783901
title: Grimm INTECOL Plenary Presentation

description: The world is urbanizing while it undergoes dramatic environmental change, especially climate change. These two drivers are on a collision course that will exaccerbate challenges for cities. At the global and local scales, new solutions will have to be found to build resilience in the cities of tomorrow. This assertion is explored through the lens of urban water systems: supply and delivery at the global scale, and stormwater management at the local scale.
DOI: 10.6084/m9.figshare.783897
title: Detailed documentation and scripts for FTL analysis

description: All of the scripts and detailed M&M for the first-to-last analysis comparing impact factor and academic faculty hiring.
DOI: 10.6084/m9.figshare.783901.v1
title: Grimm INTECOL Plenary Presentation

description: The world is urbanizing while it undergoes dramatic environmental change, especially climate change. These two drivers are on a collision course that will exaccerbate challenges for cities. At the global and local scales, new solutions will have to be found to build resilience in the cities of tomorrow. This assertion is explored through the lens of urban water systems: supply and delivery at the global scale, and stormwater management at the local scale.
DOI: 10.6084/m9.figshare.786543.v25
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.783889
title: Data and scripts for Bayesian prediction of microbial oxygen requirement of selected bacteria from the NCBI genome database

description: Additional file 1: Text-format (.txt). One-step prediction results. The classification predictions for all included genomes when using the one-step method and N-fold cross-validation. Additional file 2: Text-format (.txt). Two-step prediction results. The classification predictions for all included genomes when using the two-step method and N-fold cross-validation. Additional file 3: Text-format (.txt). Domains distinguishing anaerobes from respiring bacteria. The Pfam-A domains found significantly more frequently in bacteria which are capable of respiration (aerobes/facultative anaerobes) than in anaerobes, and vice versa. Additional file 4 Text-format (.txt). Domains distinguishing aerobes and facultative anaerobes. The Pfam-A domains found significantly more frequently in anaerobe than facultative bacteria, and vice versa. Additional file 5: Text-format (.txt). Predictions of aerobes and anaerobes only. The predictions of all of the included genomes which are either aerobe or anaerobe, excluding the facultative anaerobes. Made only to allow for direct comparison to results in the literature. Additional file 6. Text-format (.txt). Protein domain presence/absence matrix. The presence/absence profiles with respect to Pfam-A domains of all included genomes. Additional file 7: Python-format (.py). Get likelihoods from Pfam-domains. A python script used to identify the Pfam-A domains over-represented in one class compared to the others based on the training set, and on that basis construct the likelihood files used for predictions. Additional file 8: Python-format (.py). Predictor. A python script used to predict the oxygen requirements classification of genomes in the test set, based on protein domain profile and the likelihood files created by Additional file 7. Additional file 9: Python-format (.py). Predictive evaluations. A python script used to evaluate the predictors performance by calculating a Matthew's Correlation Coefficient for each of the classifications in the predictions made by Additional file 8.
DOI: 10.6084/m9.figshare.783897.v1
title: Detailed documentation and scripts for FTL analysis

description: All of the scripts and detailed M&M for the first-to-last analysis comparing impact factor and academic faculty hiring.
DOI: 10.6084/m9.figshare.783898.v1
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.786543.v26
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.783864
title: Background data for "Which Network Model Should I Use?"

description: Background information, figures and most tables used for:- Evans, T.S. (2014). ‘Which Network Model Should I Use? Towards a Quantitative Comparison of Spatial Network Models in Archaeology’, in T. Brughmans, A. Collar and F. Coward (eds), The Connected Past: challenging networks in archaeology and history. Cambridge: Cambridge University Press, chapter 8. The files contain the figures and most of the tables used in the paper. Background information on the programmes used and on their input data also here e.g. the locations of the 40 test sites used in the paper (shown in figure 5). More details about these files are in the file InformationOnFiles.pdf.
DOI: 10.6084/m9.figshare.783888
title: Data on kleptoplast light-response curves

description: Data on kleptoplast light-response curves
DOI: 10.6084/m9.figshare.786543.v28
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.783856
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.786543.v27
title: ROP of R-manOCA: DFT study

description: ROP of R-manOCA: DFT study Protocol:ωB97XD/6-31G(d)/SCRF=(cpcm,solvent=chloroform) Gaussian09 rev A.02 output file
DOI: 10.6084/m9.figshare.783851
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.783856.v1
title: Gaussian Job Archive for C2H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.783076
title: Stopping the SuperSpreader Epidemic

description: Actually ti is a modeling paper, written for a general audience, about the so-called SuperSpreader epidemic, for which SARS in 2003 was the canonical example and MERS may be the next. The main point is that SS epidemic is very different from the traditional uniform epidemic and targeted interventions can be effective even without lowering R0 below one.
DOI: 10.6084/m9.figshare.783077
title: TreeOTU

description: Our current understanding of the taxonomic and phylogenetic diversity of cellular organisms, especially the bacteria and archaea, is mostly based upon studies of sequences of the small- subunit rRNAs (ssu-rRNAs). To address the limitation of ssu-rRNA as a phylogenetic marker, such as copy number variation among organisms and complications introduced by horizontal gene transfer, convergent evolution, or evolution rate variations, we have identified protein- coding gene families as alternative Phylogenetic and Phylogenetic Ecology markers (PhyEco). Current nucleotide sequence similarity based Operational Taxonomic Unit (OTU) classification methods are not readily applicable to amino acid sequences of PhyEco markers. We report here the development of TreeOTU, a phylogenetic tree structure based OTU classification method that takes into account of differences in rates of evolution between taxa and between genes. OTU sets built by TreeOTU are more faithful to phylogenetic tree structures than sequence clustering (non phylogenetic) methods for ssu-rRNAs. OTUs built from phylogenetic trees of protein coding PhyEco markers are comparable to our current taxonomic classification at different levels. With the included OTU comparing tools, the TreeOTU is robust in phylogenetic referencing with different phylogenetic markers and trees. The TreeOTU package includes OTU classification, comparison and tree rooting scripts, as well as the alignments, trees and NCBI/IMG taxonomic classification information related to this research. The contents in he package are described in the file README.txt.
DOI: 10.6084/m9.figshare.783851.v1
title: Gaussian Job Archive for C37H46ClMnN2O3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.783076.v1
title: Stopping the SuperSpreader Epidemic

description: Actually ti is a modeling paper, written for a general audience, about the so-called SuperSpreader epidemic, for which SARS in 2003 was the canonical example and MERS may be the next. The main point is that SS epidemic is very different from the traditional uniform epidemic and targeted interventions can be effective even without lowering R0 below one.
DOI: 10.6084/m9.figshare.783068
title: Evolution of Age-Dependent Traits

description: Files from "Evolution of male life histories and age-dependent sexual signals under female choice" submitted to PeerJ. age_dep-peerj.tar.gz - code for running simulations age_dep_figures.tar.gz - all the figures presented in the manuscript
DOI: 10.6084/m9.figshare.783077.v1
title: TreeOTU

description: Our current understanding of the taxonomic and phylogenetic diversity of cellular organisms, especially the bacteria and archaea, is mostly based upon studies of sequences of the small-subunit rRNAs (ssu-rRNAs). To address the limitation of ssu-rRNA as a phylogenetic marker, such as copy number variation among organisms and complications introduced by horizontal gene transfer, convergent evolution, or evolution rate variations, we have identified protein-coding gene families as alternative Phylogenetic and Phylogenetic Ecology markers (PhyEco). Current nucleotide sequence similarity based OTU (Operational Taxonomic Unit) are not readily applicable to amino acid sequences of PhyEco markers. We report here the development of TreeOTU, a phylogenetic tree structure based OTU classification method that takes into account of differences in rates of evolution between taxa and between genes. OTU sets built by TreeOTU are more faithful to phylogenetic tree structures than sequence clustering (non phylogenetic) methods for ssu-rRNAs. OTUs built from phylogenetic trees of protein coding PhyEco markers are comparable to our current taxonomic classification at different levels. With the included OTU comparing tools, the TreeOTU is robust in phylogenetic referencing with different phylogenetic markers and trees. The TreeOTU package includes OTU classification, comparison and tree rooting scripts, as well as the alignments, trees and NCBI/IMG taxonomic classification information related to this research. The contents in he package are described in the file package_introduction.txt.
DOI: 10.6084/m9.figshare.783066
title: Age-dependent trait evolution code

description: Code for running simulations
DOI: 10.6084/m9.figshare.783065
title: Age-dependent trait evolution (figures)

description: This file contains all the data and figures. Depends on several LaTeX packages, see README within the archive.
DOI: 10.6084/m9.figshare.783057
title: The role of SNAREs and vesicle trafficking in plant cytokinesis and cell-plate formation

description: This is a abstract of a poster summarizing my previous graduate research project under the supervision of Dr. Anton Sanderfoot at University of Minnesota.
DOI: 10.6084/m9.figshare.783057.v1
title: The role of SNAREs and vesicle trafficking in plant cytokinesis and cell-plate formation

description: This is a abstract of a poster summarizing my previous graduate research project under the supervision of Dr. Anton Sanderfoot at University of Minnesota.
DOI: 10.6084/m9.figshare.783066.v2
title: Age-dependent trait evolution code

description: Code for running simulations
DOI: 10.6084/m9.figshare.783077.v2
title: TreeOTU

description: Our current understanding of the taxonomic and phylogenetic diversity of cellular organisms, especially the bacteria and archaea, is mostly based upon studies of sequences of the small- subunit rRNAs (ssu-rRNAs). To address the limitation of ssu-rRNA as a phylogenetic marker, such as copy number variation among organisms and complications introduced by horizontal gene transfer, convergent evolution, or evolution rate variations, we have identified protein- coding gene families as alternative Phylogenetic and Phylogenetic Ecology markers (PhyEco). Current nucleotide sequence similarity based Operational Taxonomic Unit (OTU) classification methods are not readily applicable to amino acid sequences of PhyEco markers. We report here the development of TreeOTU, a phylogenetic tree structure based OTU classification method that takes into account of differences in rates of evolution between taxa and between genes. OTU sets built by TreeOTU are more faithful to phylogenetic tree structures than sequence clustering (non phylogenetic) methods for ssu-rRNAs. OTUs built from phylogenetic trees of protein coding PhyEco markers are comparable to our current taxonomic classification at different levels. With the included OTU comparing tools, the TreeOTU is robust in phylogenetic referencing with different phylogenetic markers and trees. The TreeOTU package includes OTU classification, comparison and tree rooting scripts, as well as the alignments, trees and NCBI/IMG taxonomic classification information related to this research. The contents in he package are described in the file README.txt.
DOI: 10.6084/m9.figshare.783056
title: Code archive to accompany the paper "Three-Dimensional Mapped-Grid Finite Volume Modeling of Poroelastic-Fluid Wave Propagation"

description: This archive contains the code to run all the simulations in the paper "Three-Dimensional Mapped-Grid Finite Volume Modeling of Poroelastic-Fluid Wave Propagation" by Grady Lemoine. It requires Clawpack 4.3, Clawpack 4.6, and a clone of the PyClaw github repository to run.
DOI: 10.6084/m9.figshare.783065.v2
title: Age-dependent trait evolution (figures)

description: This file contains all the data and figures. Depends on several LaTeX packages, see README within the archive.
DOI: 10.6084/m9.figshare.783056.v1
title: Code archive to accompany the paper "Three-Dimensional Mapped-Grid Finite Volume Modeling of Poroelastic-Fluid Wave Propagation"

description: This archive contains the code to run all the simulations in the paper "Three-Dimensional Mapped-Grid Finite Volume Modeling of Poroelastic-Fluid Wave Propagation" by Grady Lemoine. It requires Clawpack 4.3, Clawpack 4.6, and a clone of the PyClaw github repository to run.
DOI: 10.6084/m9.figshare.783065.v1
title: Age-dependent trait evolution (figures)

description: This file contains all the data and figures. Depends on several LaTeX packages, see README within the archive.
DOI: 10.6084/m9.figshare.783077.v3
title: TreeOTU

description: Our current understanding of the taxonomic and phylogenetic diversity of cellular organisms, especially the bacteria and archaea, is mostly based upon studies of sequences of the small- subunit rRNAs (ssu-rRNAs). To address the limitation of ssu-rRNA as a phylogenetic marker, such as copy number variation among organisms and complications introduced by horizontal gene transfer, convergent evolution, or evolution rate variations, we have identified protein- coding gene families as alternative Phylogenetic and Phylogenetic Ecology markers (PhyEco). Current nucleotide sequence similarity based Operational Taxonomic Unit (OTU) classification methods are not readily applicable to amino acid sequences of PhyEco markers. We report here the development of TreeOTU, a phylogenetic tree structure based OTU classification method that takes into account of differences in rates of evolution between taxa and between genes. OTU sets built by TreeOTU are more faithful to phylogenetic tree structures than sequence clustering (non phylogenetic) methods for ssu-rRNAs. OTUs built from phylogenetic trees of protein coding PhyEco markers are comparable to our current taxonomic classification at different levels. With the included OTU comparing tools, the TreeOTU is robust in phylogenetic referencing with different phylogenetic markers and trees. The TreeOTU package includes OTU classification, comparison and tree rooting scripts, as well as the alignments, trees and NCBI/IMG taxonomic classification information related to this research. The contents in he package are described in the file README.txt.
DOI: 10.6084/m9.figshare.783024
title: "Pipeline" for CellProfiler - CBC cytometry in psittaciformes - Beaufrere et al.

description: Complete Blood Cell Count in Psittaciformes by Using High- Throughput Image Cytometry: A Pilot Study Hugues Beaufre' re, DrMedVet, Dipl ECZM (Avian), Me ́lanie Ammersbach, DVM, and Thomas Tully, DVM, MS, Dipl ABVP (Avian), Dipl ECZM (Avian)