cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6205337
title: Collection of primary literature pdfs from the Goldberg reviews

description: These are the archive copies of all currently crawled pdf files from the Goldberg reviews.
DOI: 10.25345/c5x921k18
title: MassIVE Reanalysis RMSV000000354.3550 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FKBP7 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5sn01488
title: MassIVE Reanalysis RMSV000000354.3557 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TOM1L2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5nv99b52
title: MassIVE Reanalysis RMSV000000354.3556 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, KIAA0020 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19208745
title: NPP_Grid_SEIB_con_05_sum_final

description: This is model product of projected NPP by SEIB-DGVM.
DOI: 10.6084/m9.figshare.19208748
title: Pre_his_con_05

description: This is historic precipitation data.
DOI: 10.6084/m9.figshare.19208748.v1
title: Pre_his_con_05

description: This is historic precipitation data.
DOI: 10.6084/m9.figshare.19208751
title: Tem_his_con_05

description: This is historic temperature data.
DOI: 10.6084/m9.figshare.19208751.v1
title: Tem_his_con_05

description: This is historic temperature data.
DOI: 10.6084/m9.figshare.19208745.v1
title: NPP_Grid_SEIB_con_05_sum_final

description: This is model product of projected NPP by SEIB-DGVM.
DOI: 10.6084/m9.figshare.19208754
title: SEIB_biomassloss_con_05

description: This is model product of LOSS for SEIB-DGVM.
DOI: 10.6084/m9.figshare.19208754.v1
title: SEIB_biomassloss_con_05

description: This is model product of LOSS for SEIB-DGVM.
DOI: 10.6084/m9.figshare.19208724
title: Fig1_LOSS_aggregated_submission.csv

description: This is data of LOSS aggregated at 0.25 degree used in the machine learning to generate LOSS maps. The raw inventory data are available upon reasonable request from the corresponding author.<br>
DOI: 10.6084/m9.figshare.19208736.v1
title: ML_LOSS_SD_50degree_constrain

description: This is the final LOSS map (standard deviation) at 0.5 degree used in our ML constraint approach
DOI: 10.6084/m9.figshare.19208739
title: ML_LOSS_mean_50degree_constrain

description: This is the final LOSS maps (mean) at 0.5 degree used in our ML constraint approach.
DOI: 10.6084/m9.figshare.19208739.v1
title: ML_LOSS_mean_50degree_constrain

description: This is the final LOSS maps (mean) at 0.5 degree used in our ML constraint approach.
DOI: 10.6084/m9.figshare.19208736
title: ML_LOSS_SD_50degree_constrain

description: This is the final LOSS map (standard deviation) at 0.5 degree used in our ML constraint approach
DOI: 10.25345/c5j38kj17
title: MassIVE Reanalysis RMSV000000354.3554 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CSGALNACT2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19208760
title: sum_future_npp_constrain_biomassloss_climate_new

description: This is the code of machine learning constraint for projected NPP. The code can be adapted to constrain the projected heterotrophic respiration.
DOI: 10.6084/m9.figshare.19208760.v1
title: sum_future_npp_constrain_biomassloss_climate_new

description: This is the code of machine learning constraint for projected NPP. The code can be adapted to constrain the projected heterotrophic respiration.
DOI: 10.25345/c5db7vq7g
title: MassIVE Reanalysis RMSV000000354.3560 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TROAP [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c58k74x27
title: MassIVE Reanalysis RMSV000000354.3558 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TPI1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19208793
title: dataset

description: Dynamic Equivalence
DOI: 10.6084/m9.figshare.19208793.v2
title: dataset

description: Dynamic Equivalence
DOI: 10.6084/m9.figshare.19208793.v1
title: manuscript.docx

description: Dynamic Equivalence
DOI: 10.25345/c54t6f39c
title: MassIVE Reanalysis RMSV000000354.3563 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NT5C1A [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5125q961
title: MassIVE Reanalysis RMSV000000354.3568 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, GEM [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5wd3q23w
title: MassIVE Reanalysis RMSV000000354.3567 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FECH [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5rn3080m
title: MassIVE Reanalysis RMSV000000354.3565 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DEGS1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5mw28f6v
title: MassIVE Reanalysis RMSV000000354.3566 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NRM [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5h41jn21
title: MassIVE Reanalysis RMSV000000354.3569 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, RNMTL1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5cc0tt7s
title: MassIVE Reanalysis RMSV000000354.3562 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C21orf70 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c57m0413f
title: MassIVE Reanalysis RMSV000000354.3561 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HIST1H1A [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c53x83m22
title: MassIVE Reanalysis RMSV000000354.3559 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ASS1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.34740/kaggle/dsv/3212486
title: Mahanagar Yatayat Dataset
DOI: 10.34740/kaggle/dsv/3212498
title: Kuwait COVID-19 Dataset
DOI: 10.25345/c5057cs93
title: MassIVE Reanalysis RMSV000000354.3570 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, F2RL1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.17894/ucph.486663b9-e9c8-43b5-8ae6-0e47edf12acf
title: Data for manuscript "Potential ammonia volatilization from 39 different novel biobased fertilizers applied to soil – A laboratory study using European soils"
DOI: 10.25345/c5vd6p55m
title: MassIVE Reanalysis RMSV000000354.3572 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, FAM82A1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5qn5zc1g
title: MassIVE Reanalysis RMSV000000354.3573 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CDC20 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5kw57j73
title: MassIVE Reanalysis RMSV000000354.3564 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, HRC [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.15139/s3/gbfhpb
title: Code for: A Bipartite Graph-Based Expected Networks Approach (BiG-BET) Identifies DDR Genes Not Associated with TMB Yet Predictive of Immune Checkpoint Blockade Response

description: Python code for generating BiG-BET scores and analyzing clinical datasets.
DOI: 10.25345/c5g44hr2s
title: MassIVE Reanalysis RMSV000000354.3574 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, KLHL2 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.5281/zenodo.6205856
title: Proton collision producing top pair, decaying hadronically via bottom quarks and W bosons

description: This dataset contains the matrix element calculations for 10,000 events of `p p &gt; t t~ , (t &gt; b W+) , (t~ &gt; b~ W-)`, as produced by MadGraph, without showering or hadronisation, and applying no cuts.
DOI: 10.5281/zenodo.6205855
title: Proton collision producing top pair, decaying hadronically via bottom quarks and W bosons

description: This dataset contains the matrix element calculations for 10,000 events of `p p &gt; t t~ , (t &gt; b W+) , (t~ &gt; b~ W-)`, as produced by MadGraph, without showering or hadronisation, and applying no cuts.
DOI: 10.5281/zenodo.5705590
title: Datasets for the Carpentry-style RNA-seq lesson

description: <strong>Lesson files</strong> For all compressed files, go to the Shell and uncompress using `tar -xzvf myarchive.tar.gz`. <strong>1) Bioinformatic files: </strong>bioinformatic_tutorial_files.tar.gz This archive contains the following datasets: FASTQ files from Arabidopsis leaf RNA-seq: Arabidopsis_sample3.fq.gz Arabidopsis_sample1.fq.gz Arabidopsis_sample4.fq.gz Arabidopsis_sample2.fq.gz Arabidopsis thaliana genome assembly and genome annotation: AtChromosome1.fa.gz ath_annotation.gff3.gz The sequence of sequencing adapters in adapters.fasta <strong>2) Gene counts usable with DESeq2 and R: </strong>tutorial.tar.gz This archive contains the following datasets: <strong>raw_counts.csv</strong>: a dataframe of the sample raw counts. It is a comma-separate values file therefore data are separated by commas ','. <strong>samples_to_conditions.csv</strong>: a dataframe that indicates the correspondence between samples and experimental conditions (e.g. control, treated). <strong>differential_genes.csv: </strong>a dataframe that contains the result of the DESeq2 analysis specifying this contrast in `DESEq2::results()` function: `<code class="language-plaintext">contrast = c("infected", "Pseudomonas_syringae_DC3000", "mock")</code> The<strong> raw_counts.csv </strong>file was obtained by running the `v0.1.1` version of a RNA-Seq bioinformatic pipeline on the mRNA-Seq sequencing files from Vogel et al. (2016): https://www.ebi.ac.uk/ena/data/view/PRJEB13938. Please read the original study (Vogel et al. 2016): https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14036 ==== <strong>Exercise files</strong> <strong>1) NASA spaceflight</strong> The NASA GeneLab experiment GLDS-38 performed transcriptomics and proteomics of Arabidopsis seedlings in microgravity by sending seedlings to the International Space Station (ISS). The raw counts, scaled counts and sample to conditions files are available in the ZIP archive <strong>2) Deforges 2019 hormone-treatments</strong>
DOI: 10.25345/c5bc3sx81
title: MassIVE Reanalysis RMSV000000354.3571 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZSCAN20 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19189895.v1
title: Replicon reference plasmids

description: Replicon classification reference dataset
DOI: 10.25345/c52z12q3v
title: MassIVE Reanalysis RMSV000000354.3577 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ATP13A1 [launched by fce971e5ede541cca3fc5307a73294d8]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.