cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12853646.v4
title: Non-walled spherical <i>Acinetobacter baumannii</i> is an important type of persister upon <i>β</i>-lactam antibiotic treatment

description: Bacterial persistence is one of the major causes of antibiotic treatment failure and the step stone for antibiotic resistance. However, the mechanism by which persisters arise has not been well understood. Maintaining a dormant state to prevent antibiotics from taking effect is believed to be the fundamental mechanistic basis, and persisters normally maintain an intact cellular structure. Here we examined the morphologies of persisters in <i>Acinetobacter baumannii</i> survived from the treatment by three major classes of antibiotics (i.e. <i>β</i>-lactam, aminoglycoside, and fluoroquinolone) with microcopy and found that a fraction of enlarged spherical bacteria constitutes a major sub-population of bacterial survivors from <i>β</i>-lactam antibiotic treatment, whereas survivors from the treatment of aminoglycoside and fluoroquinolone were less changed morphologically. Further studies showed that these spherical bacteria had completely lost their cell wall structures but could survive without any osmoprotective reagent. The spherical bacteria were not the viable-but-non-culturable cells and they could revive upon the removal of <i>β</i>-lactam antibiotics. Importantly, these non-walled spherical bacteria also persisted during antibiotic therapy <i>in vivo</i> using <i>Galleria mellonella</i> as the infection model. Additionally, the combinational treatment on <i>A. baumannii</i> by <i>β</i>-lactam and membrane-targeting antibiotic significantly enhanced the killing efficacy. Our results indicate that in addition to the dormant, structure intact persisters, the non-wall spherical bacterium is another important type of persister in <i>A. baumannii.</i> The finding suggests that targeting the bacterial cell membrane during <i>β</i>-lactam chemotherapy could enhance therapeutic efficacy on <i>A. baumannii</i> infection, which might also help to reduce the resistance development of <i>A. baumannii</i>.
DOI: 10.6084/m9.figshare.22209655
title: Feasibility and Acceptability of Implementing a Practice Guideline for the use of High Flow Nasal Cannula in Critically Ill Patients who have Hypoxemia: a Multi-centre Study in Nepal

description: The study aimed to evaluate the feasibility and acceptability of using a high-flow nasal cannula (HFNC) guideline in Nepal's intensive care units (ICUs). The researchers measured the proportion of eligible patients who received HFNC, compared the oxygenation measures between those who survived and those who did not, and surveyed healthcare workers for their feedback. They found that the guideline was associated with a small increase in HFNC use and was feasible, acceptable, and appropriate for use in clinical practice in ICUs in Nepal. Patients who successfully used HFNC had better oxygenation measures than those who did not, and healthcare workers rated the guideline highly.<br>
DOI: 10.6084/m9.figshare.24306883
title: Data for <b><i>Deep mantle cycle of chalcophile metals and sulfur in subducted oceanic crust</i></b>

description: This dataset includes (1) contents of Cu, Ag, Au, Re and PGEs and other compositions of Hannuoba alkaline basalts in this study, Cenozoic alkaline basalts from eastern China that compiled from the literature used in this study and standards; (2) major compositions of Cpx separated from Hannuoba alkaline basalts and calculated P-T; (3) Silver mass balances which calculated from the IODP Hole 1256D sulfide population and modeling the behavior of chalcophile elements during partial melting.
DOI: 10.6084/m9.figshare.25211441
title: Post kidney transplant hematologic abnormalities and association of post-transplant anemia with graft function-Data

description: Renal transplant outcomes
DOI: 10.6084/m9.figshare.25211441.v1
title: Data-post transplant anemia

description: Renal transplant outcomes
DOI: 10.6084/m9.figshare.13296947
title: The complete mitochondrial genome of Fieberiella septentrionalis (Hemiptera Cicadellidae Deltocephalinae)

description: The complete mitochondrial genome of <i>Fieberiella septentrionalis</i> was annotation for the first time in the present study. The mitogenome was found to have circular shape, with 16,175 bp in size, containing 13 protein coding genes (PCGs), 22 transfer-RNA genes, 2 ribosomal-RNA genes, and 1 non-coding region. The nucleotide composition biases toward A and T is 77.9% of the entirety, which is a typical structure of Cicadellidae. All PCGs have ATN as the start codon, TAA and single T as the stop codon. The resulting phylogenetic tree confirms that the <i>F. septentrionalis</i> belongs to the subfamily of Deltocephalinae and Fieberiellini as sister to the remaining tribes of this subfamily.
DOI: 10.6084/m9.figshare.20105505
title: Additional file 1 of Outcomes of prophylactic abdominal aortic balloon occlusion in patients with placenta previa accreta: a propensity score matching analysis

description: Additional file 1.
DOI: 10.5285/bfe2a9be-768b-4fdc-bc73-93f9b166fb44
title: Lipid biomarker palaeothermometry and carbon isotope data for eleven lignites spanning the Cretaceous-Paleogene (K-Pg) boundary in North America

description: The dataset consists of eleven spreadsheet tabs, each tab containing lipid biomarker palaeothermometry (air temperature reconstructions) and bulk organic carbon isotope data from individual lignites that are known to stratigraphically span the Cretaceous-Palaeogene (K-Pg) boundary. Uncalibrated, raw biomarker distributions (glycerol dialkyl glycerol tetraethers; GDGTs) are provided, as well as the calculated calibration outputs.
Site coordinates are: West Bijou, Colorado (39°34'14''N, 104°18'09''W), Sussex, Wyoming (43°39'40"N, 106°19'06"W), Pyramid Butte, North Dakota (46°25'03''N, 103°58'33''W), Hell Creek Road, Montana (47°31'35"N, 106°56'23"W), Rock Creek West, Saskatchewan (49°02'20"N, 106°34'00"W), Wood Mountain Creek, Saskatchewan (49°25'20"N, 106°19'50"W), Frenchman Valley, Saskatchewan (49°20’56"N, 108°25’05"W), Knudesn’s Coulee, Alberta (51°54’27"N, 113°02’57"W) Griffith’s Farm, Alberta (51°54’47"N, 112°57’51"W), Coal Valley Cores (GSC CV-42-2, Cores 1 and 2), Alberta (53°05’02"N, 116°47’ 40"W) Police Island, Northwest Territories (64°52'42"N, 125°12'33"W).
DOI: 10.6084/m9.figshare.20105554.v1
title: Additional file 4 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 4: High-throughput sequencing for mRNA expression analysis in A549 cells between NC and sh-circEPB41 group.
DOI: 10.5258/soton/d2917
title: Dataset supporting the study of 'Extending transition support with digital stories for a new school building'

description: This dataset is from the first of two studies undertaken in support of the the University of Southampton Doctoral Thesis entitled 'Reimagining co-production as playful learning: A new perspective on autistic students’ experiences of participatory design and Digital Storytelling'. 

The study examined the process of co-creating a set of digital resources to support students in the transition to a new school building in September 2021.

The data consists of session transcripts from both the resource creation and evaluation phases, the digital resources, and transcripts from evaluation interviews. All data has been pseudo-anonymised, though the school name is genuine.

Data to be available only to UK researchers from HE settings, who have sought ethical approval from their own institutions.
DOI: 10.6084/m9.figshare.20105505.v1
title: Additional file 1 of Outcomes of prophylactic abdominal aortic balloon occlusion in patients with placenta previa accreta: a propensity score matching analysis

description: Additional file 1.
DOI: 10.48457/iopan-4fd51776-de4e-42ab-82e3-aaa9e1ae94e4
title: Organic carbon content (Corg), total nitrogen content (Ntot) and their stable isotopes (δ13C and δ15N) from two depth zones in Isfjord, Malangen, Saltfjord and Selbjørnfjord.

description: Benthic fauna and sediment was collected with a Van Veen grab in the outer parts of four fjords. Water was collected with a Niskin bottle from surface (~20 m depth) and bottom (~5 m above the seafloor) and suspended particulate organic matter was collected by filtration through pre-combusted GF/F filters. In each fjord, samples were collected from two depth zones (100-150 m & 200-250 m) at the following positions: Isfjord (100-150 m: 78.249°N, 13.978°E; 200-250 m: 78.213°N, 14.388°E & 78.162°N, 14.174°E), Malangen (100-150 m: 69.535°N, 18.510°E; 200-250 m: 69.468°N, 18.372°E), Saltfjord (100-150 m: 67.155°N, 14.152°E; 200-250 m: 67.175°N, 14.130°E), and Selbjørnfjord (100-150 m: 59.995°N, 5.234°E; 200-250 m: 59.986°N, 5.246°E). Samples were repeatedly treated with 2 M HCl to remove carbonates and then analyzed for their organic carbon content (Corg), total nitrogen content (Ntot) as well as their stable isotopes (δ13C and δ15N) with an Elemental Analyzer Flash EA 1112 Series interfaced to an Isotopic Ratio Mass Spectrometer IRMS Delta V Advantage (Thermo Electron Corp., Germany). Corg [in % for fauna and sediment; in mg L-1 for suspended particulate organic matter], Ntot [in % for fauna and sediment; in mg L-1 for suspended particulate organic matter], and their stable isotope ratios δ13C and δ15N [both in ‰] are given in the presented data.
DOI: 10.6084/m9.figshare.20105542.v1
title: Additional file 1 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 1: High-throughput sequencing detection show the different expression of circRNA from three NSCLC and three adjacent normal tissue samples.
DOI: 10.48457/iopan-92686c22-d253-430b-b6db-d119ae97dc4e
title: Chlorophyll a (chl a) and phaeophytin (phaeo) pigments concentration in Arctic fjords

description: Surface sediment (~1cm) was collected from Van Veen grab samples in the outer parts of four fjords. Water was collected with a Niskin bottle from surface (~20 m depth) and bottom (~5 m above the seafloor) and filtered through pre-combusted GF/F filters. In each fjord, samples were collected from two depth zones (100-150 m & 200-250 m) at the following positions: Isfjord (100-150 m: 78.249°N, 13.978°E; 200-250 m: 78.213°N, 14.388°E & 78.162°N, 14.174°E & 78.238°N, 14.388°E), Malangen (100-150 m: 69.535°N, 18.510°E; 200-250 m: 69.468°N, 18.372°E), Saltfjord (100-150 m: 67.155°N, 14.152°E; 200-250 m: 67.175°N, 14.130°E), and Selbjørnfjord (100-150 m: 59.995°N, 5.234°E; 200-250 m: 59.986°N, 5.246°E). Samples were analyzed following the EPA 445.0 method. Sediment and filters were extracted with 10 ml of 90% acetone at 4 °C in dark for 24h. Samples were centrifuged, and the supernatant was analyzed using a Turner Designs AU-10 fluorimeter before and after acidification with 100 μl 0.1 M HCl for Chlorophyll a (chl a) and phaeophytin (phaeo), respectively.
DOI: 10.6084/m9.figshare.14345721
title: Change in mortality rates of respiratory disease during the COVID-19 pandemic

description: This study explored the change in mortality rates of respiratory disease during the corona virus disease 2019 (COVID-19) pandemic. Death data of registered residents of Suzhou from 2014 to 2020 were collected and the weekly mortality rates due to respiratory disease and all deaths were analyzed. The differences in mortality rates during the pandemic and the same period in previous years were compared. Before the pandemic, the crude mortality rate (CMR) and standardized mortality rate (SMR) of Suzhou residents including respiratory disease, were not much different from those in previous years. During the emergency period, the CMR of Suzhou residents was 180.2/100,000 and the SMR was 85.5/100,000, decreasing by 9.1% and 14.6%, respectively; the CMR of respiratory disease was 16.4/100,000 and the SMR was 6.8/100,000, down 41.4% and 44.9%, respectively. Regardless of the mortality rates of all deaths or respiratory disease, the rates were higher in males than in females, although males had aslightly greater decrease in all deaths during the emergency period compared with females, and the opposite was true for respiratory disease. During the pandemic, the death rate of residents decreased, especially that due to respiratory disease.
DOI: 10.35097/1914
title: Simulated 2D RASER MRI dataset for AI-driven artefact correction

description: # Simulated 2D RASER MRI dataset for AI-driven artefact correction

Data for AI-driven artefact correction in 2D RASER MRI images. 

Random images are generated with basic shapes and image transformations. 30 projections of each image are taken, and undergo a RASER (Radiowave amplification by the stimulated emission of radiation) [1] simulation in MATLAB. The data is divided into 3 subsets: 
 
- 10k_images.7z --&gt; standard random images
- 10k_images_WithPump.zip --&gt; projections experience parahydrogen pumping
- 1k_images_20TPI.zip --&gt; high total population inversion (TPI) variations of +/- 20%

## File format

Folder structure: ```{subset}/image{#}/{TPI value}/{filename.csv}```

Each folder contains the following files:

- A(0).csv --&gt; Signal amplitude
- d(0).csv --&gt; TPI evolution
- meta.csv --&gt; Meta information
- output(Real and Imag).csv --&gt; Simulated RASER signal
- Phi(0).csv --&gt; Signal phase


## Data loading

Scripts for data loading are provided with the code at [github.com/mobecks/raser-mri-ai](https://github.com/mobecks/raser-mri-ai).

## References

[1] Sören Lehmkuhl et al., RASER MRI: Magnetic resonance images formed spontaneously exploiting cooperative nonlinear interaction.Sci. Adv.8,eabp8483(2022). DOI:10.1126/sciadv.abp8483
DOI: 10.6084/m9.figshare.20105551
title: Additional file 3 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 3: High-throughput sequencing for miRNA expression analysis in A549 cells between NC and sh-circEPB41 group.
DOI: 10.6084/m9.figshare.20105554
title: Additional file 4 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 4: High-throughput sequencing for mRNA expression analysis in A549 cells between NC and sh-circEPB41 group.
DOI: 10.48457/iopan-d68fa482-3905-4a4a-ac5b-46b3ff405440
title: Surface sediment granulometry from two depth zones in Isfjord, Malangen, Saltfjord and Selbjørnfjord.

description: Surface sediment (~5cm) was collected from Van Veen grab samples in the outer parts of four fjords. In each fjord, 5 replicate samples were collected from two depth zones (100-150 m & 200-250 m) at the following positions: Isfjord (100-150 m: 78.249°N, 13.978°E; 200-250 m: 78.238°N, 14.388°E), Malangen (100-150 m: 69.535°N, 18.510°E; 200-250 m: 69.468°N, 18.372°E), Saltfjord (100-150 m: 67.155°N, 14.152°E; 200-250 m: 67.175°N, 14.130°E), and Selbjørnfjord (100-150 m: 59.995°N, 5.234°E; 200-250 m: 59.986°N, 5.246°E). Samples were freeze-dried, homogenized, and dry sieved through a set of sieves (2000µm, 1000µm, 500µm, 250µm, 125µm, 63µm). The weight of the individual size fractions was determined and is given in gram.
DOI: 10.6084/m9.figshare.16435595
title: Ultrasound-guided microwave ablation for secondary hyperparathyroidism: a systematic review and meta-analysis

description: Microwave ablation (MWA) is used for the treatment of severe secondary hyperparathyroidism (SHPT), but its efficacy and safety still remained unclear. This study aimed to investigate the efficacy and safety of ultrasound (US)-guided MWA in patients with SHPT. The PubMed, Cochrane library, Embase, China national knowledge infrastructure (CNKI) and Wanfang databases were searched to identify published studies that evaluated the efficacy and safety of US-guided MWA in patients with SHPT. The primary outcomes were parathyroid hormone (PTH), serum calcium and phosphorus levels. A total of 26 studies with 932 patients were identified. The PTH levels showed significant reduction at 1 month [weighted mean difference (WMD) = 945.33, 95% CI: 797.15∼1093.52] and 6 months (WMD = 1,151.91, 95% CI: 990.93∼1312.89) after MWA of SHPT patients. The serum calcium (WMD = 0.39, 95% CI: 0.30 ∼ 0.48) and phosphorus levels (WMD = 0.64, 95% CI: 0.43 ∼ 0.85) showed significant reduction at 6 months after MWA of SHPT patients. The most common complications observed were hypocalcemia (35.2%) and transient hoarseness (9.2%). No other major complications or death occurred in our study patients. These findings suggest MWA as a safe and effective minimally invasive technique for the management of SHPT. PTH, calcium, and phosphorus levels were significantly reduced at 1 and 6 months after MWA.
DOI: 10.6084/m9.figshare.22721437.v1
title: Additional file 1 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 1. Supplementary table 1. Clinical characteristics of the BLCA patients used in this study.
DOI: 10.6084/m9.figshare.16435595.v1
title: Ultrasound-guided microwave ablation for secondary hyperparathyroidism: a systematic review and meta-analysis

description: Microwave ablation (MWA) is used for the treatment of severe secondary hyperparathyroidism (SHPT), but its efficacy and safety still remained unclear. This study aimed to investigate the efficacy and safety of ultrasound (US)-guided MWA in patients with SHPT. The PubMed, Cochrane library, Embase, China national knowledge infrastructure (CNKI) and Wanfang databases were searched to identify published studies that evaluated the efficacy and safety of US-guided MWA in patients with SHPT. The primary outcomes were parathyroid hormone (PTH), serum calcium and phosphorus levels. A total of 26 studies with 932 patients were identified. The PTH levels showed significant reduction at 1 month [weighted mean difference (WMD) = 945.33, 95% CI: 797.15∼1093.52] and 6 months (WMD = 1,151.91, 95% CI: 990.93∼1312.89) after MWA of SHPT patients. The serum calcium (WMD = 0.39, 95% CI: 0.30 ∼ 0.48) and phosphorus levels (WMD = 0.64, 95% CI: 0.43 ∼ 0.85) showed significant reduction at 6 months after MWA of SHPT patients. The most common complications observed were hypocalcemia (35.2%) and transient hoarseness (9.2%). No other major complications or death occurred in our study patients. These findings suggest MWA as a safe and effective minimally invasive technique for the management of SHPT. PTH, calcium, and phosphorus levels were significantly reduced at 1 and 6 months after MWA.
DOI: 10.6084/m9.figshare.19581503.v1
title: An upper bound on the minimum rank of a symmetric Toeplitz matrix completion problem

description: We consider a symmetric Toeplitz matrix completion problem, of which the matrix possesses special row and column structures. It has wide applications in diverse areas and is well-known to be computationally NP-hard. This note presents an upper bound on the objective of minimizing the rank of the symmetric Toeplitz matrix in the completion problem based on conclusions from the trigonometric moment problem and the semi-infinite problem. We prove that the upper bound is less than twice the number of the active constraints of the associated semi-infinite problem. Moreover, it is less than twice the number of linear constraints of the problem.
DOI: 10.6084/m9.figshare.22721446
title: Additional file 4 of Apoptosis related genes mediated molecular subtypes depict the hallmarks of the tumor microenvironment and guide immunotherapy in bladder cancer

description: Additional file 4. Supplementary table 4. The results of the univariate Cox regression analysis between gene expression and OS inTCGA-BLCA dataset.
DOI: 10.6084/m9.figshare.21154493.v1
title: Raw data used for statistical analyses in this study. from Rising floor and dropping ceiling: organ heterogeneity in response to cold acclimation of the largest extant amphibian

description: Supplementary data 2: Table S1: Food intake. Table S2: Body traits. Table S3: Raw data of preferred temperature. Table S4: Organ weight. Table S5: Statistics of Polymerase reads (Whole length transcriptome). Table S6: Statistics of ORI (Whole length transcriptome). Table S7: Statistics of transcripts (Whole length transcriptome). Table S8: Table presenting the expression levels of transcripts. Table S9: Table presenting the metabolite abundance. Table S10: Detailed information for catabolic genes in Figure 3. Table S11: Detailed information for KEGG enrichment analyses.
DOI: 10.6084/m9.figshare.22721492
title: Additional file 3 of Partial erosion on under-methylated regions and chromatin reprogramming contribute to oncogene activation in IDH mutant gliomas

description: Additional file 3. Table S2: The genomic context of phUMRs and fhUMRs.
DOI: 10.6084/m9.figshare.20105542
title: Additional file 1 of Circular RNA EPB41 expression predicts unfavorable prognoses in NSCLC by regulating miR-486-3p/eIF5A axis-mediated stemness

description: Additional file 1: High-throughput sequencing detection show the different expression of circRNA from three NSCLC and three adjacent normal tissue samples.
DOI: 10.6084/m9.figshare.16435834
title: Additional file 5 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 5: Supplementary Tables-Tables S4. Insulator targets.
DOI: 10.6084/m9.figshare.16435840
title: Additional file 7 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 7: Supplementary Tables -Tables S6. Differential expression analysis of whole proteome and phosphoproteome data.
DOI: 10.6084/m9.figshare.16435843.v1
title: Additional file 8 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 8: Supplementary Tables -Tables S7. Summary of RNA-seq data.
DOI: 10.6084/m9.figshare.16435834.v1
title: Additional file 5 of Acute depletion of CTCF rewires genome-wide chromatin accessibility

description: Additional file 5: Supplementary Tables-Tables S4. Insulator targets.
DOI: 10.5517/ccdc.csd.cc2j090w
title: CCDC 2323977: Experimental Crystal Structure Determination

description: Related Article: Rhone P. Brocha Silalahi, Tzu-Hao Chiu, Ying-Yann Wu, C.W. Liu|2024|Polyhedron|254|116934|doi:10.1016/j.poly.2024.116934
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j1ppz
title: CCDC 2325331: Experimental Crystal Structure Determination

description: Related Article: Kai Yang, Longhui Wu, Xinlei Fu, Weiming Chen, Zhaowen Liu, Xiaopeng Peng|2024|Tetrahedron|156|133948|doi:10.1016/j.tet.2024.133948
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.rj9pqr
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phreatia limenophylax (Endl.) Rchb.f."
 ]
}

 The dataset includes 76 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0076985-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.