cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16408152.v1
title: Supplementary Material for: Activating Natural Killer Cell Receptors, Selectins, and Inhibitory Siglecs Recognize Ebolavirus Glycoprotein

description: Expression of the extensively glycosylated Ebolavirus glycoprotein (EBOV-GP) induces physical alterations of surface molecules and plays a crucial role in viral pathogenicity. Here we investigate the interactions of EBOV-GP with host surface molecules using purified EBOV-GP, EBOV-GP-transfected cell lines, and EBOV-GP-pseudotyped lentiviral particles. Subsequently, we wanted to examine which receptors are involved in this recognition by binding studies to cells transfected with the EBOV-GP as well as to recombinant soluble EBOV-GP. As the viral components can also bind to inhibitory receptors of immune cells (e.g., Siglecs, TIM-1), they can even suppress the activity of immune effector cells. Our data show that natural killer (NK) cell receptors NKp44 and NKp46, selectins (CD62E/P/L), the host factors DC-SIGNR/DC-SIGN, and inhibitory Siglecs function as receptors for EBOV-GP. Our results show also moderate to strong avidity of homing receptors (P-, L-, and E-selectin) and DC-SIGNR/DC-SIGN to purified EBOV-GP, to cells transfected with EBOV-GP, as well as to the envelope of a pseudotyped lentiviral vector carrying the EBOV-GP. The concomitant activation and inhibition of the immune system exemplifies the evolutionary antagonism between the immune system and pathogens. Altogether these interactions with activating and inhibitory receptors result in a reduced NK cell-mediated lysis of EBOV-GP-expressing cells. Modulation of these interactions may provide new strategies for treating infections caused by this virus.
DOI: 10.5281/zenodo.5235663
title: Gut bacterial communities of Lymantria xylina and their associations with host development and diets

description: The gut microbiota of insects has a wide range of effects on host nutrition, physiology, and behavior. The structure of gut microbiota may also be shaped by their environment, causing them to adjust to their hosts; thus, the objective of this study was to examine variations in the morphological traits and gut microbiota of <em>Lymantria xylina</em> in response to natural and artificial diets using high-throughput sequencing. Regarding morphology, the head widths for larvae fed on a sterilized artificial diet were smaller than for larvae fed on a non-sterilized host-plant diet in the early instars. The gut microbiota diversity of <em>L. xylina</em> fed on different diets varied significantly, but did not change during different development periods. This seemed to indicate that vertical inheritance occurred in <em>L. xylina</em> mutualistic symbionts. <em>Acinetobacter</em> and <em>Enterococcus</em> were dominant in/on eggs. In the first instar larvae, <em>Acinetobacter</em> accounted for 33.52% of the sterilized artificial diet treatment, while <em>Enterococcus </em>(67.88%) was the predominant bacteria for the non-sterilized host-plant diet treatment. Gut microbe structures were adapted to both diets through vertical inheritance and self-regulation. This study clarified the impacts of microbial symbiosis on <em>L. xylina</em> and might provide new possibilities for improving the control of these bacteria.
DOI: 10.5281/zenodo.4726392
title: Gut bacterial communities of Lymantria xylina and their associations with host development and diets

description: The gut microbiota of insects has a wide range of effects on host nutrition, physiology, and behavior. The structure of gut microbiota may also be shaped by their environment, causing them to adjust to their hosts; thus, the objective of this study was to examine variations in the morphological traits and gut microbiota of <em>Lymantria xylina</em> in response to natural and artificial diets using high-throughput sequencing. Regarding morphology, the head widths for larvae fed on a sterilized artificial diet were smaller than for larvae fed on a non-sterilized host-plant diet in the early instars. The gut microbiota diversity of <em>L. xylina</em> fed on different diets varied significantly, but did not change during different development periods. This seemed to indicate that vertical inheritance occurred in <em>L. xylina</em> mutualistic symbionts. <em>Acinetobacter</em> and <em>Enterococcus</em> were dominant in/on eggs. In the first instar larvae, <em>Acinetobacter</em> accounted for 33.52% of the sterilized artificial diet treatment, while <em>Enterococcus </em>(67.88%) was the predominant bacteria for the non-sterilized host-plant diet treatment. Gut microbe structures were adapted to both diets through vertical inheritance and self-regulation. This study clarified the impacts of microbial symbiosis on <em>L. xylina</em> and might provide new possibilities for improving the control of these bacteria.
DOI: 10.5519/qd.2rko6b1m
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (20 records)
DOI: 10.5281/zenodo.5027117
title: Historical forest cover in the Kivu Rift (1958)

description: If you use this dataset, please refer to our work:<strong> Depicker, A., Jacobs, L., Mboga, N. <em>et al.</em> Historical dynamics of landslide risk from population and forest-cover changes in the Kivu Rift. <em>Nat Sustain</em> (2021). https://doi.org/10.1038/s41893-021-00757-9</strong> This .tif file represents the forest cover in the Kivu Rift in 1958, covering parts of the eastern DRC, western Rwanda, and western Burundi. The forest data was derived from 1 m resolution panchromatic historical aerial photographs (conserved at the Royal Museum for Central Africa) and resampled to a 30 m resolution. The data range from 0 to 1, representing the % of forest cover. Data smaller than 0 can be considered NoData values. This work was funded by the Belgian Science Policy Office (BELSPO) through the PAStECA project (BR/165/A3/PASTECA) entitled `Historical Aerial Photographs and Archives to Assess Environmental Changes in Central Africa' (http://pasteca.africamuseum.be/).
DOI: 10.5281/zenodo.5027116
title: Historical forest cover in the Kivu Rift (1958)

description: If you use this dataset, please refer to our work:<strong> Depicker, A., Jacobs, L., Mboga, N. <em>et al.</em> Historical dynamics of landslide risk from population and forest-cover changes in the Kivu Rift. <em>Nat Sustain</em> (2021). https://doi.org/10.1038/s41893-021-00757-9</strong> This .tif file represents the forest cover in the Kivu Rift in 1958, covering parts of the eastern DRC, western Rwanda, and western Burundi. The forest data was derived from 1 m resolution panchromatic historical aerial photographs (conserved at the Royal Museum for Central Africa) and resampled to a 30 m resolution. The data range from 0 to 1, representing the % of forest cover. Data smaller than 0 can be considered NoData values. This work was funded by the Belgian Science Policy Office (BELSPO) through the PAStECA project (BR/165/A3/PASTECA) entitled `Historical Aerial Photographs and Archives to Assess Environmental Changes in Central Africa' (http://pasteca.africamuseum.be/).
DOI: 10.5281/zenodo.5235678
title: The influence coefficients used in Wind Energy Science paper "A computationally efficient engineering aerodynamic model for swept wind turbine blades"

description: The influence coefficients for the convective correction with full double-precision floating-point accuracy. This is the supplement for the research article: "A computationally efficient engineering aerodynamic model for swept wind turbine blades", submitted to Wind Energy Science journal. Code language: Fortran
DOI: 10.5281/zenodo.5235677
title: The influence coefficients used in Wind Energy Science paper "A computationally efficient engineering aerodynamic model for swept wind turbine blades"

description: The influence coefficients for the convective correction with full double-precision floating-point accuracy. This is the supplement for the research article: "A computationally efficient engineering aerodynamic model for swept wind turbine blades", submitted to Wind Energy Science journal. Code language: Fortran
DOI: 10.5281/zenodo.5235684
title: PGA Tour Data Set - 2018 to 2021

description: Data Set for PGA Tour Results for the 2018 to 2021 seasons. Additional incorporation of Player Profile data, Weather data and Golf Course Data
DOI: 10.5281/zenodo.5235683
title: PGA Tour Data Set - 2018 to 2021

description: Data Set for PGA Tour Results for the 2018 to 2021 seasons. Additional incorporation of Player Profile data, Weather data and Golf Course Data
DOI: 10.18112/openneuro.ds003499.v1.0.0
title: Developmental change in prefrontal cortex recruitment supports the emergence of value-guided memory
DOI: 10.6084/m9.figshare.16408317
title: Supplementary Data for article 'Carboxyl-richness controls organic carbon preservation during coprecipitation with iron (oxyhydr)oxides in the natural environment' by Curti et al.

description: Supplementary Data for article 'Carboxyl-richness controls organic carbon preservation during coprecipitation with iron (oxyhydr)oxides in the natural environment' by Curti et al.
DOI: 10.18112/openneuro.ds003499.v1.0.1
title: Developmental change in prefrontal cortex recruitment supports the emergence of value-guided memory
DOI: 10.34740/kaggle/dsv/2551343
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.5226369
title: A proposal for using molecular spin qudits as quantum simulators of light–matter interactions. Open data set

description: Data supporting the original figures 2,3 of the related publication.
DOI: 10.5281/zenodo.5226368
title: A proposal for using molecular spin qudits as quantum simulators of light–matter interactions. Open data set

description: Data supporting the original figures 2,3 of the related publication.
DOI: 10.34740/kaggle/dsv/2551362
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.17632/ymtwtk79hm.4
title: South American Business Environment Cost Index: reforms for Brazil

description: The World Bank's Ease-of-Doing-Business is the most popular instrument for measuring the conditions of a country's business environment. While useful for directing investments and guiding reforms, researchers associate the EDBI with problems such as: very different country analyses, data quality and miscalculations. The data made available in this repository make it possible to build a new index that represents the costs of doing business in South American countries. The following data are available: (1) Expert influence; (2) Assessments carried out, as well as their conversion into matrices; (3) Calculation of consensus among experts, (4) EDBI Sub-Indices; (5) Indicators and data from the Uncertainty Analysis. The application of the Principal Component Analysis to the data (4) allows obtaining the weight of the Indicators available in (5).
DOI: 10.17632/n6cpmh28mg.1
title: Multi-objective optimization of the activities schedule within the research project

description: Data associated with the manuscript "Multi-objective optimization of the activities schedule within the research project". These materials contain Java source code, an executable software and dataset generated with its help. Abstract: In some cases, innovative research is carried out as part of a research project consisting of several activities provided that the success of each activity, as well as its implementation time and costs can be predicted only with a certain probability. In such situation the order of implementation of activities may be of great importance since the expected project costs and the expected project duration depend on it. In this article we propose a methodology to justify the selection of Pareto efficient scheduling strategies for the activities within the research project that provide a balance between the expected project makespan and the expected project costs.
DOI: 10.17632/g5t7d7bp4h.1
title: LINF_170006700

description: elongation factor 1-alpha Leishmania infantum (strain JPCM5)
DOI: 10.17632/tnjb6fn2sb.1
title: LINF_170006600

description: elongation factor 1-alpha Leishmania infantum (strain JPCM5)
DOI: 10.17632/sz5k8skvcm.1
title: Duodenal Dieulafoy Lesions: A Systematic Review of Case Reports

description: This is the extracted data of all the cases included in our systematic review.
DOI: 10.17632/shvph7b6t3.4
title: Interventions for molluscum contagiosum: a systematic review and network meta-analysis with normalized entropy assessment

description: Supplementary tables and figures
DOI: 10.17632/dsz7j9sjgw.1
title: Mild Repetitive Head Impacts Alter Perivascular Flow in the Midbrain Dopaminergic System in Awake Rats and Increase Microgliosis and AQP4 Expression and Depolarization

description: This dataset contains raw MRI NIFTI images acquired for the published paper titled "Mild Repetitive Head Impacts Alter Perivascular Flow in the Midbrain Dopaminergic System in Awake Rats and Increase Microgliosis and AQP4 Expression and Depolarization". The dataset has a control group and a mild head impact group indicated by the folder name. Each subfolder has both T1-weighted axial and sagittal MRI images acquired using Fast Low Angle Shot (FLASH) sequence (TR/TE = 300/2.5ms and Flip Angle = 30°) and images were collected every 2 min and 41 sec for two hours after contrast administration. A contrast agent phantom was attached to the head coil during each scan for validation of image intensity rescaling.
DOI: 10.17632/26n7cd5dzr.1
title: Proteomic and quantitative data of dopaminergic neuron vesicles potentiated by beta-synuclein after MPTP-induced toxicity

description: Previous studies have demonstrated the importance of beta-synuclein as a modulator of various mechanisms implicated in chemical neurotransmission but information about other two synuclein family members’ involvement in molecular processes taking place in presynaptic terminals is limited. Here we demonstrated that dopamine uptake by synaptic vesicles isolated from the striatum of mice lacking beta-synuclein was significantly reduced. Reciprocally, reintroduction, either in vivo or in vitro, of beta-synuclein but not alpha- or gamma-synuclein improved uptake by vesicles isolated from the striatum of triple-alpha/beta/gamma-synuclein deficient mice. Proteomic analysis of synuclein-free and -synuclein-only-containing synaptic vesicles suggested that mechanistically, beta-synuclein potentiates vesicular monoamine transporter 2 (VMAT2)-dependent dopamine uptake by assembling specific multiprotein complexes comprised of resident vesicular proteins and transiently associated predominantly cytosolic proteins. The increased availability of such complexes on the surface of striatal synaptic vesicles lacking other synucleins should also promote sequestration of 1-methyl-4-phenylpyridinium (MPP+), a toxic metabolite of 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP), which explains the resistance of dopaminergic neurons of substantia nigra lacking alpha-synuclein and/or gamma-synuclein to this neurotoxin. The present data demonstrate the rational distribution of the most significantly altered proteins between WT, TKO, and alpha/gamma-synuclein KO striatal vesicle proteomes. Data cover essential information regarding proteomic assay confirmed by Western blotting analysis.
DOI: 10.17632/dd5prwnhpv.1
title: GNSS Clock Corrections

description: This dataset contains GNSS clock corrections obtained from SVR and ARIMA models as machine learning solutions for solving the latency problem in real-time clock corrections. This dataset contains navigation, observation and clock corrections obtained from the different solutions from 13/01/2014 to 14/01/2014 for nine IGS stations.
DOI: 10.17632/p9rkcyd3cz.2
title: Assessing gait asymmetry in patient with stroke by a smartphone

description: This research data is is currently unpublished material entitled "Assessing gait asymmetry in patient suffering stroke with lower limb angles using sagittal plane images captured by a smartphone".
DOI: 10.17632/g3mwgs6f7n.1
title: Community education tool for detection of nail melanoma by nail salon technicians (Supplemental Material)

description: Supplemental Material for Publication of Evaluation of community education tool for detection of nail melanoma by nail salon technicians.
DOI: 10.17632/w78gnx5rrk.1
title: Physiochemical Properties of bHLH Transcription Factor Proteins of Grapes.

description: Bio-computational analysis revealed uneven distribution of 140 bHLH protein encoding genes through out the plant genome. Bash scripts was used to process and assemble the information under captions TF Name, Peptide Sequence, Length, Aromaticity, GRAVY, pI, M.w and Ins. index. which is given here.
DOI: 10.17632/5vn48f492w.2
title: Peptidomics of casein digestion in the pig duodenum

description: Data accompanied with the paper "Digestion of micellar casein in duodenum cannulated pigs. Correlation between in vitro simulated gastric digestion and in vivo data" Food Chemistry vol. 343, 128424 (2021). The data are generated through the analysis of the duodenal content of six pigs fed milk casein. Samples after 5, 10, 15, 20, 30, 45, 60, 120 and 150 min of intake were analyzed by liquid chromatography coupled to tandem mass spectrometry after normalization of the protein content. A list of peptide sequences derived from milk caseins with indication of parent protein, subject number, time of digestion, position range in the mature protein and sequence in one-letter code is provided.
DOI: 10.17632/dty5vpfrnc.1
title: Residential BB in YRD

description: Residential BB concentrations and contribution in YRD
DOI: 10.17632/dg46vm7wwx.2
title: Biologics for Pediatric Moderate-to-Severe Plaque Psoriasis

description: Supplemental tables and figures
DOI: 10.17632/7bjx5hh3g3.1
title: Identification of Malnourished patients using the Global Leadership Initiative on Malnutrition (GLIM) diagnostic criteria in the United Arab Emirates

description: Background: Criteria for the diagnosis of malnutrition are still not uniform, and different tools have been proposed. Global Leadership Initiative on Malnutrition (GLIM) is newly developed consensus diagnostic criteria tool. Objective: This study aims to determine the prevalence of malnutrition using the GLIM diagnostic criteria upon admission to the hospital in the United Arab Emirates and evaluate the role, muscle strength can play in the accuracy of this diagnosis Methods: This is a cross-sectional study that was carried out in two hospitals (Rashid Hospital, Dubai, and Qassimi Hospital, Sharjah) in the United Arab Emirates. Low body mass index or significant weight loss were used as phenotypic criteria; reduced food intake or the presence of disease were used as etiological criteria. Muscle strength was measured using handgrip strength dynamometer, as a supportive measure. Results: A total of 371 patients were recruited; of which a total of 103 patients (27.76%) were diagnosed with malnutrition according to GLIM. The prevalence of low muscle strength was seen in 60.47% of females (≤ 16.0 kg) and 61.82% males (≤ 27 kg). A total of 209 patients (58.22%) were diagnosed with malnutrition accounting for low muscle strength as a proxy for muscle mass under the phenotypic criteria. Conclusion: The study opens a direction for future research to evaluate the feasibility and practicality of the proposed GLIM criteria. It also opens a path for the validation of muscle strength and relevant cut-off points across ages, genders, and ethnicities as a diagnostic criterion for malnutrition.
DOI: 10.17632/xyhphwr4b2.1
title: M-CAMP™ Cloud Platform 16S-seq Pipeline Validation Data

description: The M-CAMP™ Cloud Platform provides users with an easy-to-use web interface to analyze microbiome DNA-sequencing data with best in class bioinformatics tools. The M-CAMP™ 16S-seq taxonomic classification uses a novel approach combining alignment and kmer based taxonomic classification methodologies to produce a highly accurate and comprehensive profile. In this study we compare the performance of the M-CAMP™ taxonomic classification to previously published 16S classification methods on a large set of validation samples sequenced using V3-V4 hypervariable region primers. Included in this archive is the data used to validate the microbial taxonomic calls made by the M-CAMP™ 16S-seq classification pipeline. The paired-end fastqs of 62 validation samples are contained within the 16s_seq_data.tar archive. This archive includes fastqs published in previous studies and data sequenced for this study. Metadata about each sample can be found in "Table S1" of supplemental_tables.xlsx. The known relative abundances of all the samples at multiple taxonomic levels is found in "Table S2". Samples with "NA" in the "Number of Species" column of "Table S1" do not have known relative abundances. "Table S3" contains performance metrics for the M-CAMP™ 16S-seq classification pipeline and several existing methods used for reference. The primers used to target the V3V4 region in this study are included in the file v3v4_primers.fasta. The supplemental_methods.docx describes the commands used to install and run the previously published classification methods in this study.
DOI: 10.17632/9t7gn926ry.1
title: Ex vivo drug screening informed targeted therapy for metastatic parotid squamous cell carcinoma

description: Supplementary data files for Nykänen N et al. Supplementary data 1. GR metrics from the ex vivo drug sensitivity screening of sample A patient derived parotid SCC cells Supplementary data 2. GR metrics from the ex vivo drug sensitivity screening of sample B patient derived parotid SCC cells Supplementary data 3. RPPA assay results from the ex vivo drug sensitivity screening of sample B patient derived SCC cells
DOI: 10.17632/6wgvxwp6wp.1
title: LINF_170007000

description: elongation factor 1-alpha Leishmania infantum (strain JPCM5)
DOI: 10.17632/skkjcjybff.1
title: LINF_170006900

description: elongation factor 1-alpha Leishmania infantum (strain JPCM5)
DOI: 10.17632/z3p42swpv4.1
title: LINF_170006800

description: elongation factor 1-alpha Leishmania infantum (strain JPCM5)
DOI: 10.17632/rgsskczjrh.1
title: Trends in the Economic freedom research

description: All 1778 publications on the topic of the Economic freedom on Scopus from1942-2021!
DOI: 10.17632/8kw54kcgwn.1
title: Publications on the Financial feasibility research

description: All 1155 publications on the topic of the Financial feasibility on Scopus for bibliometric analysis!
DOI: 10.17632/rfsxsrchts.1
title: Physiochemical Properties of WRKY Transcription Factor Proteins of Grapes.

description: Although the function of a TF is determined by its tertiary structure, which is influenced by its amino acid sequence. A total 57 WRKY TF were identified in the plant. Biocomputational approaches used to analyze the physicochemical properties of WRKY transcription factor proteins of grapes. In order to characterize the physiochemical properties of TFs, six parameters have been selected: peptide length, Aromaticity, GRAVY, isoelectric point (pI), Molecular weight, and Instability Index. The physiochemical properties of peptide sequences open a new strategy for reagent design and also helps to develop a bioinformatics tool to guide peptide synthesis.
DOI: 10.17632/c45g53r8td.1
title: Physiochemical Properties of NAC Transcription Factor Proteins of Grapes.

description: Bio-computational analysis revealed uneven distribution of 75 NAC protein encoding genes through out the plant genome. Bash scripts was used to process and assemble the information under captions TF Name, Peptide Sequence, Length, Aromaticity, GRAVY, pI, M.w and Ins. index. which is given here.
DOI: 10.17632/9ds3fv5ykf.1
title: Publications on the Bank market power research

description: All 134 publications on the topic of the Bank market power on Scopus for bibliometric analysis!