cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11557299.v1
title: MOESM5 of Metabolomic analyses reveal substances that contribute to the increased freezing tolerance of alfalfa (Medicago sativa L.) after continuous water deficit

description: Additional file 5. The raw data for dry weight, moisture content of roots, LT50, malondialdehyde, starch, total soluble sugar, total soluble protein, total amino acid and proline in the two treatments at the ends of the four phases.
DOI: 10.6084/m9.figshare.16800187
title: Additional file 4 of Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs

description: Additional file 4: Table S4. The results of SNP calling for NGS data.
DOI: 10.6084/m9.figshare.16800187.v1
title: Additional file 4 of Breed-specific reference sequence optimized mapping accuracy of NGS analyses for pigs

description: Additional file 4: Table S4. The results of SNP calling for NGS data.
DOI: 10.17632/sz7jjfg6fc.1
title: Data for: A Probabilistic Model for Distinguishing between Sheep and Goat Postcranial Remains

description: The R script contains a script for the analyses and visualizations in Wolfhagen and Price (2017). Allows users to reformat the two CSV data files and calculate posterior probabilities that specimens are goats with additional SOM from Wolfhagen and Price (2017). The two .CSV files contain trait states for sheep/goat specimens from the Iron Age size of 'Ain Dara (Syria) and Middle Bronze Age site of Tell Sakhariya (Iraq). Traits are those published in Zeder, M. A., & Lapham, H. A. (2010). Assessing the reliability of criteria used to identify postcranial bones in sheep, Ovis, and goats, Capra. Journal of Archaeological Science, 37(11), 2887-2905, doi:10.1016/j.jas.2010.06.032. Each assemblage was originally analyzed and reported in other reports: 'Ain Dara: analyzed by Carol Frey and Curtis Marean, published in Frey, C. J., & Marean, C. W. (1999). Mammal Remains. In E. C. Stone, & P. E. Zimansky (Eds.), The Iron Age Settlement of 'Ain Dara, Syria: Survey and Surroundings (pp. 123-137, BAR International Series, Vol. 786). Oxford: Archaeopress. ISBN: 1841711039 Tell Sakhariya: analyzed by Katheryn Twiss, published in Twiss, K. C. (in press). Animals of the Sealands: ceremonial activities in the southern Mesopotamian "Dark Age". Iraq. The columns for each site record the following: Record: ID number assigned to the specimen by the original analysts. Site: name of the archaeological site Anatomy: code for the element of each specimen. The following codes are used: ASTR - Astragalus, CALC - Calcaneus, HUM - distal humerus, MP - metapodial, MT - metatarsal, MC - metacarpal, PH1 - first phalanx, PH2 - second phalanx, RADD - distal radius, RADP - proximal radius, TIB - distal tibia. Original ID: original identification made by the original analyst. The following codes are used: Capra - Capra hircus, Ovis - Ovis aries, O/C - indeterminate Ovis aries/Capra hircus, Bovid/Cervid - indeterminate bovid or cervid. C1, C2, C3, C4: trait states for specimen, based on the traits in Zeder and Lapham (2010) for different elements. The following codes are used: CAPRA - Capra hircus morphology, OVIS - Ovis aries morphology, O/C or C/O: indeterminate morphology between the two states,  - insufficiently preserved to determine morphological state.
DOI: 10.17632/yw7x67ckkk.1
title: Data for: Thermal expansion of the nuclear fuel-sodium reaction product Na3(U0.84(2),Na0.16(2))O4 - Structural mechanism and comparison with related sodium-metal ternary oxides

description: supplementary material for manuscript: Thermal expansion of the nuclear fuel-sodium reaction product Na3(U0.84(2),Na0.16(2))O4 - Structural mechanism and comparison with related sodium-metal ternary oxides
DOI: 10.5061/dryad.01v62/1
title: Data for Differential host responses to parasitism - Functional Ecology

description: This file contains data from a 4-year deworming experiment on African buffalo (Syncerus caffer) in Kruger National Park, South Africa. Please see the accompanying README file for heading descriptions and units and the Functional Ecology manuscript for experimental design and methods.
DOI: 10.5061/dryad.27qj6/1
title: Supplementary data set 2

description: Supplementary data set 2. Measurement of morphological variables taken from the specimens included in the morphometric analyses. Acronyms as Table 1
DOI: 10.5061/dryad.27qj6/2
title: Supplementary data set 3

description: Supplementary data set 3. Scatter plot of the two first components of the PCAs obtained with the correlation matrices of untransformed data (1) Analysis using the raw data, (2) Analysis using the data corrected by the geometric mean (GMD), (3) Analysis using the ratio variables (RD). Green circles: Bienvillia Clark; blue circles: Parabolinella Brogger; Black star: Holotype of P?. triarthroides (CPBA 5); grey star P?. triarthroides (CPBA 54); red circles: P.? triarthroides.
DOI: 10.5061/dryad.27qj6/3
title: Supplementary data set 4

description: Supplementary data set 4. Results of the PCAs performed form the correlation matrices of untransformed data: (1) Analysis using the raw data, (2) Analysis using the data corrected by the geometric mean (GMD), (3) Analysis using the ratio variables (RD). See Supplemental Data 2. Acronyms as Table 1. Asterisks indicate significative correlation.
DOI: 10.5061/dryad.27qj6/4
title: Supplementary data set 5

description: Supplementary data set 5. Input data matrix of 23 species and 40 characters (15 continuous and 25 qualitative). Each partition is indicated separately. (1) Continuous Partition: ratios (CPR), (2) Continuous Partition: Geometric Mean (CPGM), (3) Qualitative Partition (DP). Numbers of characters (0–39) and states for the qualitative partition as Table 2.
DOI: 10.5061/dryad.27qj6/5
title: Supplementary data set 1

description: Supplementary data set 1. List of the specimens reviewed to construct the matrix for the phylogenetic analysis. *: Specimens whose measurements were included in the phylogenetic analysis, **: Specimens whose measurements were included in both phylogenetic and morphometric analyses.
DOI: 10.5061/dryad.27qj6/6
title: Supplementary data set 6

description: Supplementary data set 6. Pairwise comparisons of the trees obtained with the different analyses and treatments of continuous characters, (1-2) Complete matrix (continuous partition + discrete partition): (1) SPR Distance, (2) Number of coincident nodes in the strict consensus; (3-4) Continuous Partition (CPGM vs. CPR): (3) SPR Distance, (4) Number of coincident nodes in the strict consensus; (5-6) Discrete partition and Continuous partition separately (CPGM and CPR vs. DP): (5) SPR Distance, (6)  Number of coincident nodes in the strict consensus. T= topology
DOI: 10.5061/dryad.2tf5j/1
title: Data_BosemBaillod_JournalAppliedEcology

description: Data collected in the field and used for the analysis. Column description: "Landscape" is the ID of the wheat field within a 500m radius landscape. "Sampling_Year" is the year of the data collection. "Within_field_position" denotes the transects where arthropods have been collected. "Aphid_density" and "Predator_density" are aggregated numbers of aphids and predators respectively, collected at each transect. "Predator_Prey_ratio" is the ratio between predator and prey numbers. "Parasitism_rate" is the proportion of parasitized aphids. The remaining columns are the landscape variables crop Shannon diversity (SHDI), field border length in kilometers (FBL_Km), grassy field boundary length in kilometers (GBL_Km) and the annual change in aphid host habitats (%_ΔHab).
DOI: 10.5061/dryad.3479v/1
title: capture_histories

description: Capture history data used to quantify vital rates, local population size in pools, and total metapopulation size, over time. Capture occasions 1 through 14 were conducted on 30/11/2011, 13/12/2011, 23/03/2012, 2/06/2012, 21/10/2012, 26/10/2012, 26/04/2013, 31/05/2013, 7/10/2013, 19/10/2013, 3/04/2014, 14/04/2014, 9/10/2014, respectively. Also present are the mean fish lengths and pool depths from whence fish came measured in mm and m, respectively during the length of study.
DOI: 10.5061/dryad.412nn/1
title: DietsOfPredatorsThatAreJuveniles

description: Diets of California Current marine animals  (West Coast of US, parts of Canada and Mexico) for predators that are juveniles.
DOI: 10.5061/dryad.412nn/2
title: DietsOfPredatorsThatAreAdultsOrLackAgeStructure

description: Diets of California Current (West Coast of US, parts of Canada and Mexico) for predators that are either Adults or invertebrates that lack age structure.
DOI: 10.5061/dryad.412nn/3
title: DietMatrixWippelUpdated_CaliforniaCurrent

description: DietMatrixWippelUpdated_CaliforniaCurrent.xlsx   
    This is a Microsoft Excel 2016 spreadsheet. 
    This is the complete collection of diet information. 
    See NOTES page and the full README file.
DOI: 10.5061/dryad.46bq0/1
title: Hemmings Birkhead 2017 PRSB Differential sperm storage data

description: This data file contains data on the number of sperm from different male zebra finches with long or short sperm, stored in the sperm storage tubules of females who had mated with both males. It also contains data on the number of sperm from both males that reached the perivitelline layer of the ovum. See associated README file for further details.
DOI: 10.5061/dryad.6d87m/1
title: Networked Mathematical Model

description: The mathematical model is stored in a zip file. The model is written in JAVA. There is a readme file that explains how to compile and run the file. If there are any questions please contact the first author and full assistance will be supplied.
DOI: 10.5061/dryad.6jn86.1/1.1
title: Gender&EdBoards

description: Data on the gender and country of institutional affiliation of the editorial board members of 10 scientific journals from 1985-2013, the Impact Factors of those journals in 2012, and the 5-year Impact Factors of those journals in 2012.
DOI: 10.5061/dryad.6nt07/1
title: Suarez-Rodriguez and Macias Garcia JAB

description: This is an Excel file containing data in one spreadsheet (Sheet1). The top row contains the label of each column, and the description of each of the labels is found in columns L and M. Data correspond to 32 nests, one per row, and include the amount of cellulose fibres from cigarette butts found on the original nest lining (FL; Column D) and in the artificial lining with which the former was substituted (AL; Column C), as well as the temperature (Celsius) measured twice in two occasions (Columns E, F, G and H) and the average of each of the two occasions (Columns I and J). Column A indicates the identity number of each nest, and Column B indicates the treatment to which the nest was randomly assigned (addition of dead parasites -DE-, live parasites -LE- or no parasites -NE-).
DOI: 10.5061/dryad.6sm82/1
title: Butterfly behavioral and fecundity data in response to density manipulation

description: This file contains data about egg-laying behavior and fecundity in response to variation in conspecific density (high and low) during the larval and adult stages of Pieris rapae butterflies. There are two sheets in the Excel file: one called "Behavioral Assay" and one called "Fecundity". Both sheets have data for all 48 individual butterflies included in the dataset in the published paper, and both have an "ID" column. The "ID" is the ID# for each individual butterfly and allows for cross-reference between sheets, if it is necessary to get both the behavioral and fecundity data for the same individual. Both sheets have "LarvalTreatment" and "AdultTreatment" columns, which identify whether the individual was in a "Five" or "One" treatment during each life stage, larval or adult. "Five" means that the individual was with four other conspecifics during that stage (five total individuals, high conspecific density), and "One" means that the individual was alone (one total individual, low conspecific density). The Behavioral Assay sheet has data for the number of eggs laid by individual butterflies on cabbage leaves with zero or three conspecific models, for each of three days. The Fecundity sheet shows fecundity data. "Fecundity" is a column in the sheet and equals the total number of eggs laid by an individual during the three days of the behavioral assay plus the number of dissected eggs.
DOI: 10.5061/dryad.73363/1
title: Book1
DOI: 10.5061/dryad.7f0c4/1
title: cannibalism_damsel_warming_april10_2017

description: damselfly cannibalism data.
DOI: 10.5061/dryad.7fk21/1
title: Neelon_Hoebel All Data for BehavEcol

description: Excel file containing all data used for figures and statistical analysis.
DOI: 10.5061/dryad.7m2r4/1
title: R-code

description: Includes the functions used to generate simulated data of genetic drift. Feeding this function with the parameters provided in the article and following the same procedure will provide similar results.
DOI: 10.5061/dryad.8cq1s/1
title: soil nutrients and enzyme kinetics
DOI: 10.5061/dryad.8n8t0/1
title: fasta consensus sequences of RAD loci

description: 35,152 fasta sequences of final RAD loci assembled from our dataset. Filters are described in the methods and summarized in supplemental Table S2.
DOI: 10.5061/dryad.8n8t0/2
title: VCF file containing bi-allelic SNPs

description: VCF file contains 255,290 bi-allelic SNPs identified from RADseq data from 182 samples using stacks pipeline. SNPs are not filtered by minor allele frequency.
DOI: 10.5061/dryad.8n8t0/3
title: Sample information

description: population and habitat information of samples.
DOI: 10.5061/dryad.9727v/1
title: raw data

description: All raw RADseq loci used for analyses and simulations.
DOI: 10.5061/dryad.9727v/2
title: scripts

description: All scripts/code used for analyses and simulations.
DOI: 10.5061/dryad.b7048/3
title: appendix data_fecundity_Physa a. Aplexa m.

description: appendix data on fecundity
DOI: 10.5061/dryad.b81n1/1
title: Human data

description: This is the human data of our study.
DOI: 10.5061/dryad.cv4h2/1
title: Grieshop et al. 2017_inbreeding

description: Main data for inbreeding experiment, with mode of extinction data. Forecasting/calculating the probability of extinction after 10 generations based on first-generation extinction frequencies across isofemale lines can be done from these data (see Methods). Simulating the probability of extinction based on variation in female fecundity across isofemale lines (see Methods) will require raw female fecundity data for the "Lome" population at 29c from Berger et al. (2014). Please contact me if you need help acquiring these data, or following our methods.
DOI: 10.5061/dryad.cv4h2/2
title: Grieshop et al. 2017_follow-up

description: Data for follow-up experiment, including estimates of male fertility (sex=m) and female fecundity (sex=f) across male-benefit (benefit.category=m) and female-benefit (benefit.category=f) categories (see Methods).
DOI: 10.5061/dryad.d3742/3
title: MEC_16-1202_Gutierrez_et_al_SpatialData

description: The zip archive contains the spatial data in GeoTIFF format used as input variables for explaining gene flow and to  calculate optimized resistance surfaces. Details regarding each file are described in the README section.
DOI: 10.5061/dryad.dp062/1
title: Herbivory and pollination rates

description: Herbivory rate of Iris bulleyana in relation to treatment (unmanipulated vs. protected) and tissue type (nectar and nectaries vs. tepals); and pollination rate of Iris bulleyana in relation to treatment. Treatment: 0 = unmanipulated, 1 = protected. Tissue type: 0= nectar and nectaries, 1= tepals.
DOI: 10.5061/dryad.dp062/2
title: Iris.R-code

description: R-code for analysing pollinator-herbivore interaction in Iris bulleyana. Both analyses were conducted in the R packages "lme4", and the p-values were obtained using negative binomial regressions with a log link function, because the response variables were over-dispersed counts.
DOI: 10.5061/dryad.f84rk/1
title: Table 1
DOI: 10.5061/dryad.f84rk/2
title: Table 2
DOI: 10.5061/dryad.gm073/16
title: info_marker_gene
DOI: 10.5061/dryad.gm073/17
title: monomorphism
DOI: 10.5061/dryad.gm073/18
title: prop_Tx430_distorsion
DOI: 10.5061/dryad.hm756/1
title: Quantitative Data Resubmission

description: Raw data for Fat CRISPR-induced alleles.
DOI: 10.5061/dryad.jj1tt/1
title: Scripts and datasets used in this study

description: This is a compressed zip file of scripts to process the raw data and datasets used in analyses for this study.
DOI: 10.5061/dryad.jj1tt/2
title: ND4 samples information

description: Table with information regarding all samples sequenced with mitochondrial gene ND4.
DOI: 10.5061/dryad.km170/1
title: qsdgca-data

description: The zip file contains all the source date presented in the graphs of the article.
DOI: 10.5061/dryad.n08sv/1
title: MachairSurvey2004_2008

description: The data file contains percentage cover of grass, sedge and forb species from surveys carried out in the Western Isles of Scotland at three nested quadrat scales. Quadrats at each scale were arranged in a 5x5 grid indicated by the columns Refno and Refletter.
DOI: 10.5061/dryad.n7f6q/1
title: Matsubayashietal_2017_JEB_AFLP_alldata

description: AFLP genotype data for all individuals used in the paper.
DOI: 10.5061/dryad.p42r8/1
title: GGdata_for_DRYAD

description: GoldenGate genotype data: This is a .csv fil with 304 lines (individual snipe) and 38 markers and additional information. The genotypes are coded in the following format: A/A, A/T, T/T, NA
DOI: 10.5061/dryad.r58br/1
title: animal_personality_trophic_ecolletts2017
DOI: 10.5061/dryad.rk030/1
title: Smolt RTL, adult RTL and RTL change

description: Data contained in this spreadsheet relates to the general linear models assessing variation in adult RTL and RTL change. This spreadsheet was also used for the paired t-test, assessing RTL in relation to life stage.
DOI: 10.5061/dryad.rk030/2
title: Smolt survival by date and weight

description: Data contained in this spreadsheet relates to the logistic regression model assessing migration survival in relation to smolt weight and timing of smolt migration.
DOI: 10.5061/dryad.rk030/3
title: Smolt survival by smolt RTL and FW age

description: Data contained in this spreadsheet relates to the logistic regression model assessing migration survival in relation to smolt RTL and FW age.
DOI: 10.5061/dryad.s0vc7/1
title: Analytic derivations, simulation code and results

description: The ZIP archive contains a Mathematica notebook and a PDF version of the Mathematica notebook, showing the derivation of the model as well as the code for the simulations and the results of the simulations.
DOI: 10.5061/dryad.s38jv/3
title: Polymorphism analysis between the Mediterranean oak population  and the wine population

description: This is a gzip/tar compressed data archive containing the results of sharedPoly from the libsequence analysis package (http://molpopgen.org/) (Thornton 2003). The archive contains results for each reference chromosome.
DOI: 10.5061/dryad.s38jv/4
title: Variant Effect Predictor related files

description: This is a gzip/tar compressed data archive containing the input and output files for the Variant Effect Predictor (VEP) related analyses. It also has a RepeatMasker results file, based on the sacCer3 reference genome, and a perl script "mask.repeatmasker.pl" to mask/exclude the VEP results
DOI: 10.5061/dryad.s9b8d/1
title: Food effects on lizards

description: The effects of maternal and offspring food availability on offspring traits
DOI: 10.5061/dryad.tj4p5/16
title: Table of body masses

description: For figure 3
DOI: 10.5061/dryad.tj4p5/18
title: Table of invasive species

description: For figure 3
DOI: 10.5061/dryad.tj4p5/19
title: Table of evolutionary distance

description: For figure 3, includes all mammals
DOI: 10.5061/dryad.tj4p5/20
title: Table of body missing species

description: For figure 3
DOI: 10.5061/dryad.tj4p5/21
title: Phylogeny used for figure 3

description: Dated phylogeny including extinct mammals
DOI: 10.5061/dryad.tj4p5/22
title: Functions called for figure 3

description: Needed to run Fig3_phylo_bodyMass_scripts_final.R
DOI: 10.5061/dryad.vr3hk/1
title: SelectionExperimentRcodeVirus
DOI: 10.5061/dryad.vr3hk/2
title: VirusRaw3d
DOI: 10.5061/dryad.vr3hk/3
title: SelectionExperimentRcodeGrowth
DOI: 10.5061/dryad.vr3hk/4
title: CellCountsRaw
DOI: 10.5061/dryad.vr3hk/5
title: CellCountsRaw1
DOI: 10.5061/dryad.vr4ch/1
title: Trace metals and plumage colouration

description: This file includes 3 data sheets: 1) data on melanic surface in captivity, 2) data on iridescent colouration in the wild and 3) data on iridescent and melanic colouration in captivity.
DOI: 10.17632/xr77r28gch.1
title: Data for: What Exactly, Regression of Atherosclerosis or Foreign Body Reaction With Hyaline Arteriosclerosis, Drives Transient Scaffolding of Coronary Arteries? A Serial Multimodality Imaging Subanalysis of ABSORB Cohort B1 Trial

description: The dataset contains the information regarding to the permission of the sponsor and involved CRO to conduct the intravascular imaging (QCA, IVUS, OCT, MSCT) and statistical analysis at the loop between Cardialysis B.V. (Rotterdam, The Netherlands), Erasmus MC (Rotterdam, The Netherlands) and Abbott Vascular (Santa Clara, CA). Moreover, the dataset includes lists of the studied variables with the definitions.
DOI: 10.5061/dryad.12546.2
title: Data from: Phylogenomics reveals rapid, simultaneous diversification of three major clades of Gondwanan frogs at the Cretaceous–Paleogene boundary
DOI: 10.5061/dryad.12546.2/1.2
title: Phylogenetic matrix (164 species dataset)

description: Phylogenetic matrix containing aligned DNA sequences for 95 nuclear coding loci (88,302 bp) for 164 species of frogs, including details on character partitions and best-fit models of evolution for the partitions.
DOI: 10.5061/dryad.12546.2/2.2
title: Phylogenetic matrix (309 species dataset)

description: Phylogenetic matrix containing aligned DNA sequences for 95 nuclear coding loci (88,386 bp) for 309 species of frogs, including details on character partitions and best-fit models of evolution for the partitions.
DOI: 10.5061/dryad.12546.2/3.2
title: Maximum likelihood phylogeny of 309 species

description: Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 309 species, including 145 species for which data were obtained via GenBank.
DOI: 10.5061/dryad.12546.2/4.2
title: Maximum likelihood phylogeny of 164 species

description: Maximum likelihood phylogeny generated using partitioned analysis in RAxML for 164 species.
DOI: 10.5061/dryad.1vd07/1
title: Colombelli-Negrel & Evans Mobbing alarm calls data

description: This data file contains data from call analysis and playback trials conducted in the field on superb fairy-wrens in Cleland, South Australia.The data contains the full details of each call recorded, including sex of the individual, individual number, order of year recorded, and all call parameters measured as well as the full details of each playback trial conducted including subject info, playback stimulus info, and response of the subject
DOI: 10.5061/dryad.22242/1
title: Data for pupillary responses and sexual appeal ratings

description: This data file contains mean pupillary responses and sexual appeal ratings separately for male and female observers for scrambled and intact images of men and women.
DOI: 10.5061/dryad.22242/2
title: Fixation data

description: This data file comprises observers percentage fixations for different conditions (dressed, blurred, and nude images) and regions of interest (head, body, chest, pelvis, background), for male and female observers.
DOI: 10.5061/dryad.22242/3
title: Response times

description: The data file contains the response times for images of men and women across control and normal conditions, and exposure conditions, for male and female observers.
DOI: 10.5061/dryad.2s19v/1
title: Sequence_Data

description: All sequence data collected for this project, named based on the gene.
DOI: 10.5061/dryad.2s19v/3
title: SUPPORTING_RoyalSociety-Rev

description: The revised supporting information for this publication.