cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0542m7q
title: CIL:37243, fibroblast. In Cell Image Library

description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original magnification 3,300X.
description: Whole mount fibroblast: classic first images of endoplasmic reticulum and mitochondria. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
DOI: 10.34810/data1072
title: Experimental datasets of UNICO 5G TIMING project

description: This data set complies datasets generated with experimental data generated in the framework of UNICO 5G TIMING project. Specifically, traffic captures from a testbed generated by the activity of AGVs, and data collected with the WiFi-TSN devices with the aim to characterize the latency they introduce for different types of traffic.
DOI: 10.6075/j0qv3k6f
title: CIL:37242, Gallus gallus, fibroblast, CEF (chicken embryo fibroblast. In Cell Image Library

description: Classic TEM. First description of the endoplasmic reticulum. Whole mount of unfixed, dried chick embryo fibroblast. Embryonic chick cells were grown on a thin collodion film supported by a fine mesh copper grid. After the cells had grown and spread out thin processes, the preparation was air dried. They reasoned that the thin processes would allow electrons to penetrate in the electron microscope. The only microscope available to them was owned by the Interchemical Corp. and housed in the Empire State Building. Fullam was the technician. The electron microscope was a first generation RCA type B. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
description: Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
DOI: 10.6075/j0j965s5
title: CIL:41721, Cricetulus griseus, ovary. In Cell Image Library

description: Preparation: chemically fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: film
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: High Voltage EM image of CHO metaphase chromosomes from a 'thick' section of metaphase-arrested cells treated with D20 to stabilize microtubules. This image was recorded with a specimen tilt of 45 degrees. The accompanying grouped image had a tilt of 55 degrees to create a stereo pair providing an oblique 3D view of the chromosomes.
description: CHO cells at metaphase were treated with 50% D2O, fixed with glutaraldehyde, embedded in epoxy resin and 0.5 micrometer 'thick' sections stained with uranyl acetate and lead citrate for HVEM observation at 1 MeV. See also: H. Ris 1981 Stereoscopic electron microscopy of chromosomes. Meth Cell Biol 22:77-96 H. Ris 1978 Preparation of chromatin and chromosomes for electron microscopy. Meth Cell Biol 18:220-246.
DOI: 10.6075/j0fj2fdh
title: CIL:37140, Rattus, pancreatic cell. In Cell Image Library

description: Transmission electron micrograph showing a vesicle fusing with a duct lumen in a rat pancreas. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Preparation: chemically fixed tissue
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: osmium tetroxide
Processing history: unprocessed raw data
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original magnification x16,000/
DOI: 10.6075/j03778th
title: CIL:37157, Rattus, CNS neuron (sensu Vertebrata). In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: time lapse microscopy
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Confocal images were collected on an Olympus Fluoview 1000 microscope (IX81 base) equipped with a 60X/1.35 NA (oil)UPLSAPO 60X objective (Olympus). GFP was excited using the 488 nm laser line of a multi Ar laser. Fluorescence emission was collected using the following dichroic mirror/filter: SDM560/BA505–525 (GFP).
description: This is Video S2 which corresponds to still images in top row of Figure 2D. It shows the spine dynamics of control neurons. Time-lapse confocal imaging was performed on DIV14 hippocampal neurons co-expressing GFP. Images were acquired every 1-minute using confocal microscopy. 3 frames/sec shown.
DOI: 10.6075/j0c24vcb
title: CIL:35280, Rattus rattus, hepatocyte. In Cell Image Library

description: Preparation: formaldehyde fixed tissue; glutaraldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: Rhodamine; primary antibody plus labeled secondary antibody
Processing history: 3D-deconvolution
Data qualification: Processed;spatialmeasurements
description: Image was collected with 1 60X, 63X, or 100X oil immersion objective with a numerical aperture of 1.25 such that each pixel size was 0.23 X 0.23 um. The image was collected as part of a Z series with step size of 0.53 um. A Photometrics cooled CCD camera based on the KAF1400 chip was used.
description: Primary rat hepatocytes in culture fixed and stained for beta-tubulin. The microtubules form a network throughout the cytoplasm. In this image they are seen originating from a brighter and denser region adjacent to the cell nucleus.
 
 This is a single optical section a few microns up from the substrate collected by widefield fluorescence microscopy with a Photometrics camera with a KAF1400 chip. The imaging was performed at a microscopy course at Woods Hole Oceanographic Institute in October 1993 and deconvolved on VayTec software running on a Macintosh computer. At the time, deconvolution was new and novel for use by biologists.
DOI: 10.6075/j03777bt
title: CIL:37314, Cavia porcellus, pancreatic acinar cell. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original magnification X1,000.
description: Nomaski image of live guinea pig pancreatic acinar cells. Image corresponds to Figure 1 in Proc Natl Acad Sci U S A. 1972 Oct;69(10):3028-32. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
DOI: 10.6075/j0zp452h
title: CIL:35532, Lilium longiflorum, gamete. In Cell Image Library

description: Illumination provided by a SpectraPhysics-Newport MaiTai laser with DeepSee dispersion compensation providing pulses of approximately 100 fs duration at 80 MHz. Wavelength set at 860 nm with emission at 465 to 50 nm.
Zeiss 710 multi-photon microscope with 63X N.A. 1.4 oil immersion objective. Pollen was removed from the flower, put in a coverslip bottom chamber, covered with tissue culture grade mineral oil, and imaged within 12 hours.
description: Preparation: unfixed tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: multi-photon microscopy
Parameter imaged: fluorescence emission
Source of contrast: intrinsic mass distribution
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Lilium longiflorum (Easter Lily) pollen. This is a thin optical section through the center of the desiccated stage of the mature pollen showing autofluorescence or harmonic generation of intrinsic structures. The brightest signal is from the outer layer, the exine and raised pilae.
DOI: 10.6075/j0p26wr7
title: CIL:37239, Cavia porcellus, pancreatic cell. In Cell Image Library

description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original Magnification: x25,000.

Additional reference:
Farquhar, M.G., and G.E. Palade. 1981. The Golgi apparatus (complex)-(1954-1981)-from artifact to center stage. J. Cell Biol. 91:77s-103s.
description: Preparation: chemically fixed tissue
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: osmium tetroxide
Processing history: unprocessed raw data
description: Early transmission electron micrograph of a thin section of a secretory cell from guinea pig pancreas showing endoplasmic reticulum at left and Golgi apparatus at right. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
DOI: 10.6075/j0ws8rw7
title: CIL:37149, Cavia porcellus, liver cell. In Cell Image Library

description: Preparation: cell fractionation
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
description: Transmission electron micrograph of the nucleolar fraction from a cell fractionation of guinea pig liver. 
 Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
DOI: 10.6075/j0w094k6
title: CIL:37298, Cavia porcellus, pancreatic cell. In Cell Image Library

description: Additional technical details regarding cell fractionation, specimen processing, and electron microscopy can be found in: Jamieson, J.D., and Palade, G.E. J. Cell Biol. 34:577-596, 1967. Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original Magnification: x10,000
description: Transmission electron micrograph of smooth microsomes obtained by fraction of guinea pig pancreas. Cell fractionation confirmed that newly synthesized acinar cell secretory proteins moved from the rough endoplasmic reticulum to the periphery of the Golgi in the lumen of a smooth-surfaced membrane bounded compartment. Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Preparation: osmium tetroxide fixed tissue
Relation to intact cell: isolated subcellular component
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: lead salt; uranyl salt
Processing history: scanned negative
DOI: 10.6075/j0fq9v7m
title: CIL:37202, Cavia porcellus, cardiac muscle cell. In Cell Image Library

description: Transmission electron micrograph of a section of the right atrium of a guinea pig heart.
 A portion of nucleus is seen at far left, with two centrioles close to the nuclear envelope. A region of myofibrils is seen at upper right. Between the nucleus and myofibrils are several homogeneously staining atrial granules and numerous small, darly staining glycogen granules.
 Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Preparation: chemically fixed tissue
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: osmium tetroxide
Processing history: unprocessed raw data
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original Magnification: x40,000.
DOI: 10.6075/j01g0jx9
title: CIL:37214, Rattus, neuron. In Cell Image Library

description: Transmission electron micrograph of nerve terminals from a rat tongue. 
 Note that this very early (1953) micrograph is primarily of historical interest since it pre-dates glutaraldehye fixation which was introduced in the early 60's and is considered essential for adequate nerve tissue preservation. Examples of nerve tissue micrographs prepared in 1965 are CIL:37218, CIL:37219 and CIL:37220. 
 
 Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Preparation: chemically fixed tissue
Relation to intact cell: microtome-sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: osmium tetroxide
Processing history: unprocessed raw data
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original magnification x13,200.
DOI: 10.6075/j07p8xpp
title: CIL:40701, Cricetulus griseus, epithelial cell. In Cell Image Library

description: Preparation: glutaraldehyde fixed tissue; critical_point dried specimen
Relation to intact cell: isolated subcellular component
Item type: film
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: High voltage (1MeV) transmission electron microscopy image of an isolated metaphase chromatid pair from a Chinese hamster ovary cell, showing the fiber-like structure and two large pieces of attached membrane. The image was taken with a specimen tilt of 55 degrees. Grouped with it is an image with a tilt of 48 degrees, providing a pair that affords an oblique stereo view of the chromosome.
description: Cells were treated with colchicine for 24 hr, and metaphase chromosomes isolated using the non-aqueous hexylene glycol protocol developed by Stubblefield and Wray, placed on a grid, critical point dried, and stained with uranyl acetate.
See also:
H. Ris 1981 Steroscopic electron microscopy of chromosomes. Meth Cell Biol 22:77-96
H. Ris 1978 Preparation of chromatin and chromosomes for electron microscopy. Meth Cell Biol 18:220-246.
DOI: 10.4121/3864484e-ce10-4a87-967b-0d9dc6924489
title: Data accompanying Chapter 5 of the thesis: Enabling ship changeability; a lifecycle approach to the maritime energy transition

description: This collection contains datasets created as part of the doctoral thesis "Enabling ship changeability; a lifecycle approach to the maritime energy transition by Jesper Jan Zwaginga, M. Sc in Delft University of Technology, 2020-2025.<br>It is being made public both as supplementary data for the thesis and for other researchers to use in their own work.<br>The data is part of the project READINESS, project number TWM.BL.019.002, of the research programme“Topsector Water & Maritime: the Blue route,” which is partly financed by the Dutch Research Council (NWO).<br>The data included in the zip repository has the form of PY, .XLSX and .TXT. A detailed description follows next.<br><strong>Python files</strong>1. <strong>GED_system_architecture_functions.py: </strong>graph edit distance (GED) functions that are used by the code.py version to enable qualitative graph comparison.2. <strong>GED_system_architecture_code.py: </strong>GED code to visualize graph comparison<strong>3. Graph_based_library: </strong>contains code with which the network algorithm creates connections between systems. The python file also includes a small system library example, to enable recreation of graphs as described in chapter 5 of the dissertation.<strong>Input and output data</strong><strong>1. System_attributes.xlsx: </strong>Includes all system and connection data necessary to build graphs described in dissertation chapter 5.<strong>2. Sweeped_graph_de_wbal</strong>: txt file output from the graph_based_library code that can be used to recreate diesel generator (including operational systems such as ballast-tanks) figures from dissertation chapter 5, can be visualized using GED_system_architecture_code.py<strong>3. Sweeped_graph_meoh_wbal</strong>: txt file output from the graph_based_library code that can be used to recreate methanol dual fuel generator (including operational systems such as ballast-tanks) figures from dissertation chapter 5, can be visualized using GED_system_architecture_code.py<strong>4. Sweeped_graph_meoh_ratio</strong>: txt file output from the graph_based_library code that can be used to recreate methanol dual fuel generator figures (including alternative methanol-diesel mix ratio) from dissertation chapter 5, can be visualized using GED_system_architecture_code.py
DOI: 10.5281/zenodo.17093004
title: Speeding up Pontus-Mpemba effects via dynamical phase transitions

description: We provide the raw data used to produce all the plots of our paper "Speeding up Pontus-Mpemba effects via dynamical phasetransitions"
DOI: 10.5281/zenodo.17093005
title: Speeding up Pontus-Mpemba effects via dynamical phase transitions

description: We provide the raw data used to produce all the plots of our paper "Speeding up Pontus-Mpemba effects via dynamical phasetransitions"
DOI: 10.6075/j09z9473
title: CIL:40691, Mus musculus, fibroblast. In Cell Image Library

description: High voltage (1MeV) transmission electron microscopy image of an isolated metaphase chromatid pair from a mouse A9 cell, showing the fibrous structure. The image was taken with a specimen tilt of 52 degrees. Grouped with it is an image with a tilt of 45 degrees, providing a pair that affords an oblique stereo view of the chromosome.
description: Preparation: formaldehyde fixed tissue; critical_point dried specimen
Relation to intact cell: isolated subcellular component
Item type: film
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Chromosomed were isolated from metaphase cells using a non-aqueous protocol, exposed to non-ionic detergent for 2 hr, then centrifuged through a sucrose cushion containing formaldehyde onto a carbon-coated grid (spreading technique of O.L. Miller), and critical point dried.
See also:
H. Ris 1981 Steroscopic electron microscopy of chromosomes. Meth Cell Biol 22:77-96
H. Ris 1978 Preparation of chromatin and chromosomes for electron microscopy. Meth Cell Biol 18:220-246.
DOI: 10.4121/3864484e-ce10-4a87-967b-0d9dc6924489.v1
title: Data accompanying Chapter 5 of the thesis: Enabling ship changeability; a lifecycle approach to the maritime energy transition

description: This collection contains datasets created as part of the doctoral thesis "Enabling ship changeability; a lifecycle approach to the maritime energy transition by Jesper Jan Zwaginga, M. Sc in Delft University of Technology, 2020-2025.<br>It is being made public both as supplementary data for the thesis and for other researchers to use in their own work.<br>The data is part of the project READINESS, project number TWM.BL.019.002, of the research programme“Topsector Water & Maritime: the Blue route,” which is partly financed by the Dutch Research Council (NWO).<br>The data included in the zip repository has the form of PY, .XLSX and .TXT. A detailed description follows next.<br><strong>Python files</strong>1. <strong>GED_system_architecture_functions.py: </strong>graph edit distance (GED) functions that are used by the code.py version to enable qualitative graph comparison.2. <strong>GED_system_architecture_code.py: </strong>GED code to visualize graph comparison<strong>3. Graph_based_library: </strong>contains code with which the network algorithm creates connections between systems. The python file also includes a small system library example, to enable recreation of graphs as described in chapter 5 of the dissertation.<strong>Input and output data</strong><strong>1. System_attributes.xlsx: </strong>Includes all system and connection data necessary to build graphs described in dissertation chapter 5.<strong>2. Sweeped_graph_de_wbal</strong>: txt file output from the graph_based_library code that can be used to recreate diesel generator (including operational systems such as ballast-tanks) figures from dissertation chapter 5, can be visualized using GED_system_architecture_code.py<strong>3. Sweeped_graph_meoh_wbal</strong>: txt file output from the graph_based_library code that can be used to recreate methanol dual fuel generator (including operational systems such as ballast-tanks) figures from dissertation chapter 5, can be visualized using GED_system_architecture_code.py<strong>4. Sweeped_graph_meoh_ratio</strong>: txt file output from the graph_based_library code that can be used to recreate methanol dual fuel generator figures (including alternative methanol-diesel mix ratio) from dissertation chapter 5, can be visualized using GED_system_architecture_code.py
DOI: 10.6075/j01v5cnb
title: CIL:37264, Bos taurus. In Cell Image Library

description: Zymogen granule fraction Calf. 
 Section through a pellet of a zymogen granule fraction showing that the preparation mostly consists of morphologically unaltered zymogen granules.
 Image made available by James D. Jamieson and the Department of Cell Biology, Yale University School of Medicine.
description: Preparation: osmium tetroxide fixed tissue; n-butyl methacrylate embedded tissue
Relation to intact cell: microtome-sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: lead salt
Processing history: scanned negative
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi. Original magnification x5,000.
DOI: 10.6075/j0vh5ms1
title: CIL:35530, Lilium longiflorum, gamete. In Cell Image Library

description: Preparation: unfixed tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: multi-photon microscopy
Parameter imaged: fluorescence emission
Source of contrast: intrinsic mass distribution
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Lilium longiflorum (Easter Lily) pollen. This is a thin optical section through the center of the desiccated stage of the mature pollen showing autofluorescence or harmonic generation of intrinsic structures. The brightest signal is from the outer layer, the exine and raised pilae.
description: Illumination provided by a SpectraPhysics-Newport MaiTai laser with DeepSee dispersion compensation providing pulses of approximately 100 fs duration at 80 MHz. Wavelength set at 780 nm with emission at 465 to 50 nm.
Zeiss 710 multi-photon microscope with 63X N.A. 1.4 oil immersion objective. Pollen was removed from the flower, put in a coverslip bottom chamber, covered with tissue culture grade mineral oil, and imaged within 12 hours.