cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19671498.v1
title: Supplementary Material for: Huntington’s Disease Progression and Caregiver Burden

description: Huntington’s disease (HD) is a neurodegenerative, progressive disorder conditioned by a mutation in the <i>HTT</i> gene. Its progression is dependent on the causative mutation extension. Caregivers of individuals affected by HD, most often patients’ relatives, are burdened with the care. This study aims to assess the caregivers’ burden cross-sectionally and longitudinally and look for biological and clinical patients-related burdening factors. In total, 144 caregiver-patient pairs observed annually for up to 8 years were included in the study. In all of the patients, demographic data were collected, Unified Huntington's Disease Rating Scale (UHDRS) assessments were conducted, and disease burden (DB) was calculated when caregivers were assessed in Caregiver Burden Inventory (CBI). Caregivers’ burden measured in CBI at the first visit reached 18.7 ± 18.4 scores. Longitudinal observation showed no evidence for any discrepancy between clinical progression measured in UHDRS, nor biological progression measured in DB and the caregivers’ burden progression measured in CBI. Caregivers were burdened mostly by patients’ dependence and a discrepancy between reality and life expectations. This study indicates factors to be addressed to reduce caregivers’ burden. Strict relation between caregivers’ burden and biological and clinical progression denies conception of overloaded with care tasks or adaptation to the burden.
DOI: 10.17632/58cychs2dd
title: Datasets for deciphering market segmentation by the tourists’ origin and preference using location-based social network data

description: The all_16POI_user_info.xlsx include the following information: user id, location name, location id on the Instagram, detected user origin The ins2_1.csv include the Instagram check-ins in 200 Hong Kong attractions. 200_location_id_category.csv corresponds to Table 1. The data was sourced from Hong Kong Tourism Board and manipulated by the authors.
DOI: 10.17632/677hf6g3mm
title: Glutamine production by Glul promotes thermogenic adipocyte differentiation and function through Prdm9-mediated H3K4me3 and transcriptional reprogramming

description: In this study, we reveal that glutamate-ammonia ligase (Glul)-mediated glutamine production is critical for the regulation of thermogenic adipocyte differentiation and function and systemic glucose homeostasis, and uncover an unexpected role of Prdm9-mediated H3K4me3 and transcriptional reprogramming in this process. This dataset contains processed RNA-Seq, ATAC-Seq, and CUT&Tag-Seq data from BAC (Mus musculus) cell lines. Details in the sample collection and data analysis pipeline can be found in the Method section of the manuscript. 

RNA-Seq:
 Tissue distribution.csv: RNA-Seq data of different tissues from 12-week-old C57BL/6Jmice. Each tissue was pooled from 3 individual animals.
 BAC-CTR-Gln (–)_BAC-Glul-KO-Gln (–)_BAC-Glul-KO-Gln (+).csv: RNA-Seq data from BAC-CTR-Gln (–), BAC-Glul-KO-Gln (–) and BAC-Glul-KO-Gln (+) cell lines, in 3 biological replicates. 

ATAC-Seq:
 BAC-CTR-Gln (–).bw, BAC-Glul-KO-Gln (–).bw and BAC-Glul-KO-Gln (+).bw: BigWig files of ATAC-seq from BAC-CTR-Gln (–), BAC-Glul-KO-Gln (–), and BAC-Glul-KO-Gln (+) cell lines, in 2 biological replicates. 

CUT&Tag-Seq: H3K4me3 and Acetyl-H3 binding profiles in BAC-CTR-Gln (–), BAC-Glul-KO-Gln (–), and BAC-Glul-KO-Gln (+) cell lines. H3K4me3 binding profiles in Prdm9-CTR and Prdm9-KD cell lines.
 BAC-CTR-Gln (–) H3K4me3.bw: BigWig files of BAC-CTR-Gln (–) H3K4me3 CUT&Tag-Seq.
 BAC-Glul-KO-Gln (–) H3K4me3.bw: BigWig files of BAC-Glul-KO-Gln (–) H3K4me3 CUT&Tag-Seq.
 BAC-Glul-KO-Gln (+) H3K4me3.bw: BigWig files of BAC-Glul-KO-Gln (+) H3K4me3 CUT&Tag-Seq.
 BAC-CTR-Gln (–) Acetyl-H3.bw: BigWig files of BAC-CTR-Gln (–) Acetyl-H3 CUT&Tag-Seq.
 BAC-Glul-KO-Gln (–) Acetyl-H3.bw: BigWig files of BAC-Glul-KO-Gln (–) Acetyl-H3 CUT&Tag-Seq.
 BAC-Glul-KO-Gln (+) Acetyl-H3.bw: BigWig files of BAC-Glul-KO-Gln (+) Acetyl-H3 CUT&Tag-Seq.
 BAC-CTR-Gln (–) IgG.bw: BigWig files of BAC-CTR-Gln (–) IgG CUT&Tag-Seq.
 BAC-Glul-KO-Gln (–) IgG.bw: BigWig files of BAC-Glul-KO-Gln (–) IgG CUT&Tag-Seq.
 BAC-Glul-KO-Gln (+) IgG.bw: BigWig files of BAC-Glul-KO-Gln (+) IgG CUT&Tag-Seq.
 Prdm9-CTR H3K4me3.bw: BigWig files of Prdm9-CTR H3K4me3 CUT&Tag-Seq.
 Prdm9-KD H3K4me3.bw: BigWig files of Prdm9-KD H3K4me3 CUT&Tag-Seq.
DOI: 10.3535/gpm-ex9-ffs
title: Tremataspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/szz-3ly-0yy
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/svj94tcp4n
title: CSF/serum quotients for albumin and MASP-2 with individual CSF and serum concentrations of MASP-2 in controls and patients with barrier dysfunctions and the individual expected CSF MASP-2 and CSF MASP-2.
DOI: 10.3535/0cd-9hn-ba0
title: Phyllograptus angustifolius Hall, 1857

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/kkg-cha-ccx
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/l81-j2c-yyt
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t7j-zz2-pb3
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.4588276.v2
title: CERN@school: Radiation Profiles sample dataset

description: This dataset contains copies of the original data used in the radiation profiles experiment reported in "<em>CERN@school: demonstrating physics with the Timepix detector</em>" [1]. Please refer to this paper for more information.<br>[1] T. Whyntie et al. "<em>CERN@school: demonstrating physics with the Timepix detector</em>", Contemporary Physics, DOI: 10.1080/00107514.2015.1045193 (2015)<i>CERN@school was supported by the UK Science and Technology Facilities Council (STFC) via grant numbers ST/J000256/1 and ST/N00101X/1, as well as a Special Award from the Royal Commission for the Exhibition of 1851.</i><br>
DOI: 10.6084/m9.figshare.5862504.v2
title: sUAS Example Data

description: Sample RGB camera and Multi-Spectral data set for learning to use sUAS(Drone) imagery post processing software.<br>
DOI: 10.17632/g63c5ypwgd
title: Raw data for 'Layer-specific anatomical and physiological features of the retina’s neurovascular unit'

description: Raw data for Current Biology article entitled 'Layer-specific anatomical and physiological features of the retina’s neurovascular unit'.
DOI: 10.3535/vnq-tq4-91w
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zxt-7zh-9aa
title: Saaremaaspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/bpmpjpnd8g
title: Data for: Node importance ranking in complex networks based on Multi-Criteria Decision-Making

description: The research data file includes data and MATLAB codes, the data covers the four actual networks and calculation results, and the codes cover Multi-Criteria Decision-Making(EW-TOPSIS), frequency comparation and SI model.
DOI: 10.3535/3fl-9bm-8kk
title: Oeselaspis pustulata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rg6-0b8-6db
title: Tahulaspis praevia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28601891.v1
title: Source Data .xlsx

description: This is the source data for the PNAS manuscript "Biphasic mechanochemistry of single-chain polymerization"
DOI: 10.6084/m9.figshare.c.3931732_d7.v1
title: Additional file 7: of xCell: digitally portraying the tissue cellular heterogeneity landscape

description: The spillover matrix and calibrating coefficients. (XLSX 110 kb)
DOI: 10.17632/tjm3jnnj5t
title: QoS-WSC

description: the QoS-WSC test data-set is introduced and provided for the researchers, to be used for QoS-aware web-services discovery and composition. Service specification files (WSDL files) of this data-set have been generated by injecting QoS index vectors into service specification files of the WSC05 data-set. The injected QoS index vectors have been randomly picked from the QWS ver2.0 data-set. For generating service discovery and composition requests, the QoS importance coefficients vector has also been added to requests available in the WSC05 data-set. The optimal answer is also calculated and recorded for each request.
DOI: 10.3535/3ct-5qh-9zb
title: Tahulaspis praevia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/7h5-08j-vt7
title: Tahulaspis praevia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.22360567.v2
title: t-SNE_data

description: the experimental data is chosen from the vector buildings at the scale of 1:10000 in Wuhan, China, which contains 742 building polygons
DOI: 10.17632/5j3gcd9dkd
title: DNAD, a simple tool for automatic differentiation of Fortran codes using dual numbers

description: Abstract DNAD (dual number automatic differentiation) is a simple, general-purpose tool to automatically differentiate Fortran codes written in modern Fortran (F90/ 95/2003) or legacy codes written in previous version of the Fortran language. It implements the forward mode of automatic differentiation using the arithmetic of dual numbers and the operator overloading feature of F90/ 95/2003. Very minimum changes of the source codes are needed to compute the first derivatives of Fortran programs. The ad... Title of program: DNAD Catalogue Id: AEOS_v1_0 Nature of problem Sensitivities of outputs with respect to inputs of a Fortran code are often needed in physics, chemistry, and engineering. The author of the analysis code may no longer be available and the user may not have a deep knowledge of the code. Thus a simple tool is necessary to automatically differentiate the code with very minimum change to the source codes. This can be achieved using dual number arithmetic and operator loading. Versions of this program held in the CPC repository in Mendeley Data AEOS_v1_0; DNAD; 10.1016/j.cpc.2012.12.025 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/hxwk3dks5g
title: A fast vectorized program for the cyber 205 to calculate the partition function of the 3-D Ising model

description: Abstract I describe a computer program that numerically estimates the density of states of the three-dimensional Ising model. The program runs at a speed of 110 million spin updates per second on a 2 pipe CDC Cyber 205 and 233 million updates per second on an ETA-10. Title of program: MICRO Catalogue Id: ABHR_v1_0 Nature of problem The density of states for each energy is estimated by finding the relative frequencies of each energy using a microcanonical approach. Versions of this program held in the CPC repository in Mendeley Data ABHR_v1_0; MICRO; 10.1016/0010-4655(89)90036-2 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.3535/9e6-8z8-q3z
title: Tremataspis perforata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/xdr-xlx-kyq
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5436493.v2
title: Seismotectonic map of September 2017 intraplate earthquakes in Mexico

description: Rapid seismotectonic map of September 2017 earthquakes in Mexico. The three events are extensional (normal faulting mechanisms). Two (Mw8.2, Mw7.1) broke in the downgoing slab of the Cocos plate: first one (Mw8.2) close to the trench where the plate first bends, second one (Mw7.1) near the deeper sharp bend where slab dip changes from flat to steep. Last one (Mw6.1) is more shallow and broke as a normal fault rupture in the upper continental plate.<i> </i>Epicenters, and past megathrust ruptures are from Servicio Seismológico Nacional Mexico. Earthquake source mechanisms from IPGP-Geoscope.<br><br><i>Carte sismotectonique des séismes de Septembre 2017 au Mexique. Les 3 séismes majeurs sont extensifs (ruptures en faille normale). Deux (Mw8.2, Mw7.1) ont rompu dans la plaque inférieure (plaque Cocos) en subduction. Le premier (Mw8.2) est proche de la fosse, là où la plaque plie et fléchit une première fois, le second (Mw7.1) s’est produit au coude entre la subduction plate sous le Mexique central et sa partie profonde plongeant fortement. Le dernier (Mw6.1), plus superficiel, a rompu dans la plaque supérieure continentale. Les épicentres et les zones de ruptures des séismes passés sont d’après le Servicio Seismológico Nacional Mexico, les mécanismes des séismes d’après Geoscope-IPGP.</i><br>
DOI: 10.17632/s5kth85nyj
title: Supplementary data for "A multiomics atlas of brown adipose tissue development over time”

description: Brown adipose tissues (BAT) regulate homeostatic energy balances in response to physiological changes such as nutrition intake, calorie restriction, exercise, and environmental temperature by consuming energy to generate heat, and thus serve as an important organ for obesity and metabolic diseases. We performed an integrated transcriptomic and metabolomic characterization of developing mouse BAT from embryo to adult to obtain a time-resolved picture of BAT development. We demonstrated that there are two distinct developmental changes that are BAT-specific. We also examined transcription factor binding sites and discovered key transcription factors in the developmental time course. A comparison of our data with other organ development transcriptome and metabolome data revealed BAT-specific transcriptome and metabolome patterns. Our findings provide an overview of mouse BAT development as well as implications for developmental and functional BAT controls.
DOI: 10.3535/a2v-mra-0yw
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q45-fd2-lt9
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.11925486.v1
title: The language of intuition: a thematic integration model of intuitive coherence judgments

description: People can intuitively distinguish semantically coherent from incoherent word triads, even without knowing the common denominator. Drawing on cognitive linguistics, the present authors suggest that intuitive coherence judgments are driven by the thematic relations of the triad words. Words are thematically related when they perform different roles in the same scenario (e.g. CHICKEN and EGG are related via a production theme). Thematic relations differ from associations (CHICKEN and LITTLE are associated with a Disney movie) and taxonomic relations, which specify common attributes between concepts (CHICKEN and SPARROW are both birds). Consistent with the thematic integration model, word triads with thematic (rather than taxonomic) relations were more often judged as coherent (Study 1). Moreover, priming thematic (rather than taxonomic) processing led to more intuitive coherence judgments of word triads (Study 2). In three published datasets, thematic relations between triads’ word pairs predicted over half of the variance in intuitive coherence judgments (Study 3). Finally, when the existence of a common denominator and thematic relations were independently manipulated, thematic relations drove intuitive coherence judgments (Study 4). These findings demonstrate that intuition draws on people’s thematic knowledge about the world.
DOI: 10.6084/m9.figshare.20361855.v3
title: Supplementary Figures and Tables - Inflammatory Cytokines Rewire the Proinsulin Interaction in Human Islets - Tran et. al. 2022

description: <strong>Supplemental Figure 1.</strong> <strong>Protein levels for proinsulin and controls in lysate and media.</strong> A) Western blot analysis of expression in lysate and media; Vinculin, Indoleamine 2,3-Dioxygenase 1 (IDO1) and Guanylate Binding Protein 5 (GBP5) and proinsulin. Inset is second Western blot for proinsulin in media samples B) Intracellular proinsulin measured by ELISA and normalized to lysate GAPDH. <br> <strong>Supplemental Figure 2. Proinsulin IP analysis by SDS-PAGE and MS/MS</strong> A) Western blot and silver stain of proinsulin immunoprecipitations from human islets +/- cytokines. B) Total MS/MS counts from proinsulin AP/MS (blue) and IgG AP-MS of six human islets +/- cytokines. C) The total number of proteins identified by AP-MS in distinct islet samples labeled Exp. 6,7,10,13,14,15. For each islet sample there are four IP conditions: Untreated/proinsulin IP, Untreated/IgG IP, Cytokine treated/proinsulin IP, and Cytokine treated/IgG IP. Note that biological samples 13-15 each have two technical replicate MS runs each (R1 and R2). <br> <strong>Supplemental Figure 3. AP-Western validations for selected Proinsulin Interactors identified by AP-MS. </strong>Human islet lysates were immunoprecipitated with antibodies to proinsulin (or IgG), followed by Western blot for ERGIC1, Ataxin-2, ERDJ3, QSOX1, Calnexin, BiP and proinsulin. Men=Menadione, Cyto=Cytokines, M=Markers. <br> <strong>Supplemental Figure 4. Western blot for phospho-eIF2a and total eIF2a. </strong>Human islets, untreated (CON) or cytokine treated (CYTO) were immunoblotted for eIF2a phosphorylated at Ser51 (peIF2 a) and for total eIF2a. MIN6 cells treated with Thapsigargin (Tg) were used as a positive control for peIF2a. GAPDH served as a loading control. <br> <strong>Supplemental Figure 5. KIF2A versus Insulin expression in single human </strong>b<strong>-cells. </strong>For single-cell RNA-Seq data obtained from Gene Expression Omnibus Repository (accession number GSE83139) the normalized reads for insulin (INS), glucagon (GCG), and KIF2A were log2 transformed. We defined b-cell identity as cells with INS log2 normalized reads &gt;12 and with GCG log2 normalized reads &lt;10. By these criteria, 99 cells were chosen for visualization of plotted INS values overlaid with KIF2A values.
DOI: 10.3535/1yz-wkn-4h4
title: Saaremaaspis mickwitzi

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/3tr-561-evj
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/538wvc7rp8
title: Noise Power in schizophrenia and bipolar

description: Gamma band noise power data from patients with schizophrenia and bipolar disorder and healthy controls during a cognitive task. Effects of different type of pharmacological treatments and illness chronicity in gamma NP and their relationship with clinical correlates. Data shows higher NP values in patients with schizophrenia and milder altered NP values in bipolar patient. Drug treatment and illness duration were not related to these NP alterations.
DOI: 10.3535/726-zmx-358
title: Tahulaspis ordinata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/elk-r3z-6ck
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z1l-6mf-ch6
title: Procephalaspis oeselensis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27263250.v1
title: Supplementary Material for Study on Flipped Classroom and Tooth Anatomy: Survey, Focus Group, Themes and Excerpts

description: This file contains supplementary materials related to the study <i>"Enhancing Tooth Anatomy Education: Integrating Lecturio in a Flipped Classroom for Year 1 Undergraduate Dental Students."</i> The materials include:<b>Student Perception Survey Questions</b> used to assess engagement, satisfaction, and perceived effectiveness of the flipped classroom approach.<b>Focus Group Topic Guide</b> outlining the questions and structure for gathering qualitative feedback on the flipped classroom experience.<b>Qualitative Themes and Excerpts</b> derived from focus group discussions, including key themes such as active learning, flexibility, enhanced visualization, and improved preparedness.These materials support the mixed-methods research on the effectiveness of incorporating the Lecturio platform into a flipped classroom model for teaching tooth anatomy.
DOI: 10.17608/k6.auckland.7108736.v1
title: Importing General-Purpose Graphics in R

description: This report discusses some problems that can arise when attempting to import PostScript images into R, when the PostScript image contains coordinate transformations that skew the image. There is a description of some new features in the ‘grImport’ package for R that allow these sorts of images to be imported into R successfully.
DOI: 10.3535/6z6-nqk-w72
title: Anaspida?

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qtz-zax-vep
title: Aestiaspis sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24216324.v1
title: Screening anti diabetic drugs from plant extract agains dengue virus protease NS3.

description: Archivos de los receptores usados en el manuscrito "Tamizaje de compuestos extraíbles de plantas mexicanas como guías de fármacos contra las serina-proteasas de los flavovirus del dengue y Zika."Incluye los resultados de los programas ADFR y gnina.
DOI: 10.3535/j0s-b0f-53p
title: Saaremaaspis

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zea-z3m-5v8
title: Aestiaspis sp.

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.10310786.v1
title: non-coding RNA annotations of Folsomia candida

description: non-coding RNA annotations of Folsomia candida
DOI: 10.6084/m9.figshare.3514769.v1
title: Appendix B. G200 ecoregions with a mean annual nitrogen (N) deposition &gt;10 kg·ha-1·yr-1 for the four scenarios applied: baseline 2000, maximum feasible reduction (MFR), current legislation (CLE), and Intergovernmental Panel on Climate Change (IPCC) Special Report on Emission Scenarios (SRES) A2.

description: G200 ecoregions with a mean annual nitrogen (N) deposition &gt;10 kg·ha-1·yr-1 for the four scenarios applied: baseline 2000, maximum feasible reduction (MFR), current legislation (CLE), and Intergovernmental Panel on Climate Change (IPCC) Special Report on Emission Scenarios (SRES) A2.
DOI: 10.17632/nrbj7zxxb8
title: Overview of Periodontal Disease, Etiology, Pathogenesis, Diagnosis and Treatment Therapy: Systematic Review Article

description: systematic review
DOI: 10.3535/p84-jsk-l9f
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s17-gtl-d2r
title: Osteostraci

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28687472.v2
title: Benchmark data

description: Collection of publicly available benchmarks (LCBench, PD1, NAS-Bench-101, NAS-Bench-201, and JAHS) for easy access.
DOI: 10.17632/vg579gh4kp
title: Data for: Neodymium isotopes track sources of rare earth elements in acidic mine waters

description: Major element, trace element, and Sr/Nd data reported in Tables 1-4 and Electronic Annex Supplementary Tables S-S5 of the associated manuscript.
DOI: 10.3535/23s-vws-t6g
title: Procephalaspis aff. oeselensis (Robertson)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.