cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.kp140/2
title: Belasen et al. CTmin

description: Sites are coded as follows: 1 - Naxos Low Elevation (NLE); 2 - Naxos South-Facing (NSF); 3 - Naxos North-Facing (NNF); 4 - Ovriokastro, Small Islet 1 (OVR); 5 - Aspronissi, Small Islet 2 (ASP); temp is the minimum temperature at which a lizard could right itself during a laboratory righting test; duration is the duration of the experiment in minutes; weight is the weight of the lizard in grams; SVL is the snout-vent length of the lizard in centimeters
DOI: 10.5061/dryad.kp140/3
title: Belasen et al. adult male EWL

description: Sites are divided into separate tabs in the spreadsheet.  Lizards were given a "number" and an "ID" reflecting unique toeclip combinations. Activity was recorded as either hiding, basking, or foraging. Sex is coded as F for female, F(n) for non-gravid female, F(g) for gravid female, and M for male. Site is coded as follows: 1 - Naxos Low Elevation (NLE); 2 - Naxos South-Facing (NSF); 3 - Naxos North-Facing (NNF); 4 - Ovriokastro, Small Islet 1 (OVR); 5 - Aspronissi, Small Islet 2 (ASP). Activity c and sex c are coded versions of these variables. Body temperature is the internal temperature of the lizard taken with a cloacal thermometer. Substrate temp was the temperature of the substrate on which the lizard was found, and Air temp was the temperature of the air ~5 cm above the substrate. Weight of the lizard was recorded in grams and snout-vent length (SVL) and tail length (TL) in centimeters. Tail condition (TC) was recorded as complete (1 or C) or broken (0 or B). Fragment length (FL) was recorded in centimeters for lizards with broken tails.
DOI: 10.5061/dryad.kp140/4
title: Belasen et al. thermal preference data

description: Site is coded as follows: 1 - Naxos Low Elevation (NLE); 2 - Naxos South-Facing (NSF); 3 - Naxos North-Facing (NNF); 4 - Ovriokastro, Small Islet 1 (OVR); 5 - Aspronissi, Small Islet 2 (ASP). Lizards were given an "ID" reflecting unique toeclip combinations. Sex is coded as F for female, F(n) for non-gravid female, F(g) for gravid female, and M for male. Weight of the lizard was recorded in grams and snout-vent length (SVL) and tail length (TL) in centimeters. Tail condition (TC) was recorded as complete (1 or C) or broken (0 or B). Fragment length (FL) was recorded in centimeters for lizards with broken tails. Date is the date of the thermal preference experiment and start and end time of the experiment is recorded. Temperature was recorded at 2 min intervals for one hour. Mean and quartiles were calculated at the end of the trial.
DOI: 10.5061/dryad.kp140/5
title: Belasen et al. adult male EWL

description: Lizards were given a "number" and an "ID" reflecting unique toeclip combinations. Site is coded as follows: 1 - Naxos Low Elevation (NLE); 2 - Naxos South-Facing (NSF); 3 - Naxos North-Facing (NNF); 4 - Ovriokastro, Small Islet 1 (OVR); 5 - Aspronissi, Small Islet 2 (ASP).  Snout-vent length (SVL), trunk girth, tail length (TL), and tail girth were recorded in centimeters. Surface area was calculated as the sum of the SA of the trunk (cylinder) and the tail (cone). EWL was calculated as the difference between final lizard mass and initial lizard mass, divided by number of hours the experiment was run. Any lizards that defecated were re-run. Temperature and humidity were recorded at three time points during the experiment.
DOI: 10.5061/dryad.kp140/6
title: Belasen et al. offspring EWL

description: Data on incubation time and clutch size are recorded for gravid females kept in the laboratory. Snout-vent length (SVL), trunk girth, tail length (TL), and tail girth were recorded in centimeters. Surface area was calculated as the sum of the SA of the trunk (cylinder) and the tail (cone). EWL was calculated as the difference between final lizard mass and initial lizard mass, divided by number of hours the experiment was run. Any lizards that defecated were re-run. Temperature and humidity were recorded at three time points during the experiment. EWLs from babies were recorded and averaged within in a clutch for statistical analyses.
DOI: 10.5061/dryad.kp140/7
title: Belasen et al. soil moisture data
DOI: 10.5061/dryad.kp140/8
title: Belasen et al. Hobo readouts

description: In this folder there is a separate excel file for each sampling day at each site. In the filenames, site is coded as follows: 1 - Naxos Low Elevation (NLE); 2 - Naxos South-Facing (NSF); 3 - Naxos North-Facing (NNF); 4 - Ovriokastro, Small Islet 1 (OVR); 5 - Aspronissi, Small Islet 2 (ASP). Readings from before the logger was deployed in the field (during the time between turning the logger on and arriving at the field site) were deleted. Temperature was recorded every 5 min at each site. Loggers are divided into tabs, with loggers 1 and 2 always being deployed in the sun, loggers 3 and 4 in mixed sun/shade, and loggers 5 and 6 always deployed in the shade. Each logger had two probes, thus there are two temperatures (recorded in degrees C) per logger per time point.
DOI: 10.5061/dryad.p660m.2
title: Data from: Probabilistic divergence time estimation without branch lengths: dating the origins of dinosaurs, avian flight and crown birds
DOI: 10.5061/dryad.p660m.2/1.2
title: dinosaur_MRP.tnt

description: The MRP matrix submitted to TNT (Goloboff et al. 2008) for performing tree searches; in Hennig86/TNT format.
DOI: 10.5061/dryad.p660m.2/2.2
title: dinosaur_tnt_1000_mpts.tre.zip

description: The 1,000 MPTs returned from the TNT tree searches; in Newick format (and zipped).
DOI: 10.5061/dryad.p660m.2/3.2
title: dinosaur_str_1000_mpts.tre.zip

description: The 1,000 MPTs returned from the TNT tree searches with STR taxa reinserted; in Newick format (and zipped).
DOI: 10.5061/dryad.p660m.2/4.2
title: dinosaur_dating_100_mpts.tre

description: The 100 trees randomly sampled and taken forward for dating; in Newick format.
DOI: 10.5061/dryad.p660m.2/5.2
title: consensus.tre

description: Strict consensus of the 1,000 MPTs of dinosaur_str_1000_mpts.tre.zip in Newick format.
DOI: 10.5061/dryad.p660m.2/6.2
title: dinosaur_occurrences.xlsx

description: The dinosaur occurrences used for dating; in MS Excel format.
DOI: 10.5061/dryad.q1d1s/1
title: Sequence data for exons 3 and 5 of the X-linked opsin gene (Indriidae)

description: Sequence alignments for exons 3 and 5 of the X-linked opsin gene. Data include consensus sequences for ten species of Indriidae. Alignments were generated in Geneious. The three key functional sites (180: exon 3, 277 and 285: exon 5) are highlighted (added in Adobe Illustrator).
DOI: 10.5061/dryad.q1d1s/2
title: Nucleotide alignment for exon 5 of the X-linked opsin gene (Indriidae)

description: Nucleotide alignment of consensus sequences for exon 5 of the X-linked opsin gene (Plain Text file in FASTA format generated in Geneious). Sequences represent 10 species of Indriidae.
DOI: 10.5061/dryad.q1d1s/3
title: Nucleotide alignment for exon 3 of the X-linked opsin gene (Indriidae)

description: Nucleotide alignment of consensus sequences for exon 3 of the X-linked opsin gene (Plain Text file in FASTA format generated in Geneious). Sequences represent 10 species of Indriidae.
DOI: 10.5061/dryad.r984n/1
title: RAW files C1R

description: mass spectrometry data for immunopeptidome and cell lysate o C1R cell line. File names include mass spectrometry method used.
DOI: 10.5061/dryad.r984n/2
title: T2 mass spectrometry data

description: mass spectrometry data for immunopeptidome and cell lysate o T2 cell line. File names include mass spectrometry method used.
DOI: 10.5061/dryad.r984n/3
title: GRLCL immunopeptidome

description: mass spectrometry data for immunopeptidome of GRLCL cell line. File names include mass spectrometry method used.
DOI: 10.5061/dryad.r984n/4
title: GRLCL lysate mass spectrometry data

description: mass spectrometry data for cell lysate of GRLCL cell line. File names include mass spectrometry method used.
DOI: 10.5061/dryad.sj169/10
title: 2-BRA24

description: This is the raw GCMS data for Formica selysi colony BRA24. The file is in .RAW format, which is compatible with Thermo Xcalibur, Micromass MassLynx, and Perkin Elmer TurboMass.
DOI: 10.5061/dryad.sj169/11
title: 4-AIGLEb

description: This is the raw GCMS data for Formica cinerea colony Aigle b. The file is in .RAW format, which is compatible with Thermo Xcalibur, Micromass MassLynx, and Perkin Elmer TurboMass.
DOI: 10.5061/dryad.sj169/12
title: Aggression_Trials

description: File contains data on pairwise aggression trials. Columns include: Locality_W1 & Locality_W2 (collection localities of the two workers used in the trial), Origin_W1 & Origin W2 (species used in the trial), Score: aggression score 1-4, Aggressor_ID: for aggression scores of 3 or 4, we documented whether the initial aggressor was selysi, cinerea, or whether they were both aggressive at the same time.
DOI: 10.5061/dryad.sj169/7
title: 8-FIN480

description: This is the raw GCMS data for Formica selysi colony FIN480. The file is in .RAW format, which is compatible with Thermo Xcalibur, Micromass MassLynx, and Perkin Elmer TurboMass.
DOI: 10.5061/dryad.sj169/8
title: 6-RID53

description: This is the raw GCMS data for Formica selysi colony RID53. The file is in .RAW format, which is compatible with Thermo Xcalibur, Micromass MassLynx, and Perkin Elmer TurboMass.
DOI: 10.5061/dryad.sj169/9
title: 3-AIGLEa

description: This is the raw GCMS data for Formica cinerea colony Aigle a. The file is in .RAW format, which is compatible with Thermo Xcalibur, Micromass MassLynx, and Perkin Elmer TurboMass.
DOI: 10.5061/dryad.v65m0/1
title: ThePhysiologicalCostsOfPreySwitchingDATA

description: The data constitutes two stages. Stage 1 is growth data and standard metabolic rate (SMR) data recorded when fish were fed the diet on which they were raised and Stage 2 is growth and SMR data of fish being fed a diet different to the diet on which they were raised. This information is included in the fish ID. DP = Daphnia, BW = Bloodworm, GM = Gammarus. The first two initials represent the diet the fish were raised on, the second two initials represent the food the fish were being fed when the SMR and growth measurement were taken. STAGE 1, DPDP = SMR and growth data recorded when the fish raised on Daphnia were fed Daphnia, BWBW =  SMR and growth data recorded when the fish raised on Bloodworm were fed Bloodworm, GMGM =  SMR and growth data recorded when the fish raised on Gammarus were fed Gammarus. STAGE 2, DPBW = SMR and growth data recorded when the fish raised on Daphnia were being fed Bloodworm, DPGM =  SMR and growth data recorded when the fish raised on Daphnia was being fed Gammarus, BWDP =  SMR and growth data recorded when the fish raised on Bloodworm were fed Daphnia,  BWGM =  SMR and growth data recorded when the fish raised on Bloodworm were fed Gammarus, GMBW = SMR and growth data recorded when the fish raised on Gammarus were fed Bloodworm, GMDP =  SMR and growth data recorded when the fish raised on Gammarus were fed Daphnia. The number at the end of the fish ID is to identify each individual. Start weight is the weight at the beginning of the growth trial and finish weight the weight of each fish at the end of the growth trial. SMR weight is the same as the finish weight of the growth trial because SMR was recorded immediately afterwards.
DOI: 10.5061/dryad.vr954/10
title: Plateosaurus enamel

description: Abaqus input file of a finite element model of the cranium of Plateosaurus, with the material properties of enamel assigned to the teeth. This formed part of the sensitivity analyses testing the influence of tooth material properties on results.
DOI: 10.5061/dryad.vr954/11
title: Plateosaurus mandible anterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bilateral bite at the anteriormost four teeth.
DOI: 10.5061/dryad.vr954/12
title: Plateosaurus mandible middle bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bilateral bite at the middle four teeth.
DOI: 10.5061/dryad.vr954/13
title: Plateosaurus mandible posterior bite

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, simulating a bilateral bite at the posterior four teeth.
DOI: 10.5061/dryad.vr954/14
title: Plateosaurus mandible dentine

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, with the material properties of dentine assigned to the teeth. This formed part of the sensitivity analyses testing the influence of the material properties of teeth on the results.
DOI: 10.5061/dryad.vr954/15
title: Plateosaurus mandible enamel

description: Abaqus input file of a finite element model of the mandible of Plateosaurus, with the material properties of enamel assigned to the teeth. This formed part of the sensitivity analyses testing the influence of material properties of the teeth on results.
DOI: 10.5061/dryad.vr954/6
title: Plateosaurus anterior bite

description: Abaqus input file of the finite element model of the cranium of Plateosaurus, simulating a bilateral bite at the 4 anteriormost teeth.
DOI: 10.5061/dryad.vr954/7
title: Plateosaurus middle bite

description: Abaqus input file of the finite element model of the cranium of Plateosaurus, simulating a bilateral bite at the 4 middle teeth.
DOI: 10.5061/dryad.vr954/8
title: Plateosaurus posterior bite

description: Abaqus input file of the finite element model of the cranium of Plateosaurus, loaded to replicate a static bite at the posteriormost four teeth.
DOI: 10.5061/dryad.vr954/9
title: Plateosaurus dentine

description: Abaqus input file of a finite element model of the cranium of Plateosaurus, with the material properties of dentine assigned to the teeth. This was used in the sensitivity analyses testing the influence of tooth material properties on observed results.
DOI: 10.17632/8nstj2g4ps.1
title: Data Sets of Four Experiments in the article entitled "Sexy women can tempt men down the road of immorality: exposure to sexy stimuli leads to increased dishonesty in men."

description: The raw dat set can be opened via Excel.
DOI: 10.5061/dryad.134c4/1
title: Concatenated sequence alignments

description: This file contains concatenated sequence alignments of 14 genetic markers used to construct the phylogeny of our samples.
DOI: 10.5061/dryad.134c4/2
title: Genbank accession numbers

description: This table contains the Genbank accession numbers for the genetic sequences used to construct the phylogeny.
DOI: 10.5061/dryad.134c4/3
title: Newick_Tree

description: This file is the reconstructed phylogenetic tree of our sample in Newick format.
DOI: 10.5061/dryad.134c4/4
title: R Script

description: This file is the R script used to analyse our data.
DOI: 10.5061/dryad.134c4/5
title: Table of biomechanical variables

description: This table contains the quantitative biomechanical variable measured and analysed in our study.
DOI: 10.5061/dryad.134c4/6
title: README

description: This file is the README file link to this submission. It contains descriptions and details for all files linked to this study.
DOI: 10.5061/dryad.1bt27/1
title: Angular Protrusion

description: Angular deviations of jaw protrusion during feeding in P. motoro over the course of 15 bites, for three different prey items.
DOI: 10.5061/dryad.1bt27/2
title: Symphyseal flexion

description: Symphyseal flexion during feeding in P. motoro over the course of 15 bites, for three different prey items.
DOI: 10.5061/dryad.1bt27/3
title: Coarse Processing Data

description: Bite rate, number of bites, and prey-handling times during feeding in P. motoro for three different prey items.
DOI: 10.5061/dryad.2808g/2
title: Spermatphore and Clutch data

description: All data from cage experiment
DOI: 10.5061/dryad.2t3t7/1
title: Shared dataset supporting the paper

description: Data sharable under agreement with the data provider. Basic description is included.
DOI: 10.5061/dryad.3v55m/1
title: Boric acid resistance R analysis script

description: R script that, in conjuction with the files resulting from unpacking the "BoricAcidDSPR.tar" data package tarball, will allow the generation of boric acid resistance strain means. These were used in the associated study to map QTL for boric acid resistance. Script requires only R core commands. Instructions on how to run provided within file.
DOI: 10.5061/dryad.3v55m/2
title: Directory of datafiles allowing measurement of boric acid resistance

description: This is a tarball of a defined directory structure containing raw datafiles, that together with R scripts from "DAM-BoricAcid_DSPR_AnalysisCode.txt", can be used to generate boric acid resistance strain means used in the associated study for QTL mapping. We additionally give the actual analyzed datafiles generated by the authors so potential users can assure the code works correctly in their hands. Details of the directory structure and the various file types contained within can be found in the ReadMe.
DOI: 10.5061/dryad.3vj50/23
title: Appendix 1

description: Appendix 1: Supplementary materials and methods: DNA Extraction, Library Preparation, and High-Throughput Sequencing
DOI: 10.5061/dryad.3vj50/24
title: SI_alignment_195_taxa

description: Alignment (in nexus format) of 76 protein-coding chloroplast genes from 193 angiosperm (including 11 novel taxa) and two gymnosperm outgroup taxa. Gene boundaries are indicated in the character set block under the alignment.
DOI: 10.5061/dryad.3vj50/25
title: Supplementary Figures

description: This file contains all of the supplementary figures from the study "Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale". In total, there are 52 supplementary figures within. Of these, 48 are tree files (five phylograms, four rategrams, 39 chronograms) that can be read in FigTree or a similar program. There is also a PDF with figure captions for each of the supplementary figures.
DOI: 10.5061/dryad.3vj50/26
title: Supplementary Tables

description: This file contains the four supplementary tables that are referred to in the main text of our study "Evaluating the Impact of Genomic Data and Priors on Bayesian Estimates of the Angiosperm Evolutionary Timescale".
DOI: 10.5061/dryad.4r390/1
title: Vegetation composition and Calamagrostis epigejos biomass data

description: Field-collected data of thee manipulatice experiments testing the effect of hemiparasitic Rhinanthus alectorolophus on competitive dominant grass Calamagrostis epigejos. Vegetation composition data are provided as cover-abundances. Biomass production of C. epigejos in g dry mass per square metre. Data of individual experiments are provided on separate sheets of the Excel workbook.
DOI: 10.5061/dryad.58bm7/1
title: Raw data from Environmental stress correlates with increases in both genetic and residual variances: a meta-analysis of animal studies

description: The file contains all the data for the analysis presented in the manuscript.
DOI: 10.5061/dryad.62s22/1
title: Quality-filtered VCF file for treatment-replicate 0B-I
DOI: 10.5061/dryad.62s22/2
title: Quality-filtered VCF file for treatment-replicate 0B-II
DOI: 10.5061/dryad.62s22/3
title: Quality-filtered VCF file for treatment-replicate 0B-III
DOI: 10.5061/dryad.62s22/4
title: Quality-filtered VCF file for treatment-replicate 02B-I
DOI: 10.5061/dryad.62s22/5
title: Quality-filtered VCF file for treatment-replicate 02B-II
DOI: 10.5061/dryad.62s22/6
title: Quality-filtered VCF file for treatment-replicate 02B-III
DOI: 10.5061/dryad.62s22/7
title: Quality-filtered VCF file for treatment-replicate 2B-I
DOI: 10.5061/dryad.62s22/8
title: Quality-filtered VCF file for treatment-replicate 2B-II
DOI: 10.5061/dryad.6g7j6/1
title: TRACK COHORT 857 PLOS ONE short

description: Cases are in rows. Repeated variables in columns. Variable names in row 1 (b indicates 6th grade variable assessment; c indicates 7th grade variable assessment).  Variable labels and formatting are found in README file.
DOI: 10.5061/dryad.75265/1
title: Species and site characteristics used to fit dispersal models

description: This data file is a multi-tab spreadsheet that describes the characteristics of the 64 species and the 3372 50 x 50 km grid cells spanning the contiguous United States used in the spread models (where spatial data are calculated as the grid cell area-weighted average of county-level data used in Liebhold et al. (2013)). Within the spreadsheet, the 'griddata' tab includes scaled and unscaled spatial variables by grid cell, 'scaledhostden' includes scaled host density by grid cell, 'gridtreevolume' includes raw tree volume by grid cell as measured by the Forest Inventory and Analysis National Program (FIA), 'FIAcodes' lists the host FIA codes by pest species, and 'pestdata' includes scaled and unscaled pest characteristics.
DOI: 10.5061/dryad.98g01/2
title: expert_data

description: Contains all the data acquired by the PhD student referred as the expert. Details of the columns are as follows: 
Date: Date of video acquisition
Time: Time of video acquisition
Counts: Number of sablefish in the video
MatchDateTime: Date and Time used to match the counts among the different groups
DOI: 10.5061/dryad.9r6b3/2
title: LessserKestrel_breeding_parameters_ringed_birds_dataset

description: Breeding parameters, age and recapture data of Lesser Kestrels (Falco naumanni) ringed between 2003 and 2014 at Castro Verde, Portugal
DOI: 10.5061/dryad.9r6b3/3
title: LesserKestrel_chick_data

description: Biometries (mass and wing lenght) and posterior recruitment in the population of Lesser Kestrel (Falco naumanni) chicks ringed as fledglings between 2003 and 2014 in Castro Verde Portugal. Information on brood (clutch size, laying date) of each chick is also provided.
DOI: 10.5061/dryad.9r6b3/4
title: LesserKestrel_female_mass_wing

description: Weight and wing length of female Lesser Kestrels (Falco naumanni) captured during the incubation period between 2003 and 2014 in Castro Verde, Portugal.
DOI: 10.5061/dryad.9r6b3/5
title: grasshoppers_transects_abundance

description: Mean number of grasshoppers counted in walked transects in fallow grassland patches around Lesser Kestrel (Falco naumanni) colonies between 2012 and 2015.
DOI: 10.5061/dryad.9r6b3/6
title: grasshopper_molecricket_pellets

description: Mean number of grasshoppers (Acrididae and Tetigonidae) and mole crickets (Gryllotalpidae) found in Lesser Kestrel (Falco naumanni) pellets collected in several colonies between 2007-2008 and 2012-2014.
DOI: 10.5061/dryad.g26d0/1
title: BEAST concatenated phylogenetic analyses

description: XML and trees files.
DOI: 10.5061/dryad.g26d0/2
title: Ecology - isotopes stomach contents lake areas

description: Raw stable isotope data, means, and variances for fish specimens and resources, stomach content data, and lake areas from Google Maps calculator.
DOI: 10.5061/dryad.g26d0/3
title: Morphology

description: Raw trait data, means, and variances for Caribbean populations and Cyprinodontidae phylogeny.
DOI: 10.5061/dryad.h0p04/10
title: Greenhouse_Germ
DOI: 10.5061/dryad.h0p04/4
title: Rumex_soilNuts
DOI: 10.5061/dryad.h0p04/5
title: RUMEX_Plan
DOI: 10.5061/dryad.h0p04/6
title: Bact_TRFLP_data
DOI: 10.5061/dryad.h0p04/7
title: Fun_TRFLP_data
DOI: 10.5061/dryad.h0p04/8
title: TRFLP_RUMEX_Plan
DOI: 10.5061/dryad.h0p04/9
title: TemporalSoilMoisture