cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/a62ph-wrn61
title: V. harveyi LuxQ OE

description: Vibrio harveyi strain BB120 + pFED368 (LuxQ overexpression)
description: <strong>Tilt Series Date:</strong> 2014-04-11</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio harveyi</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Nicola Lorenz</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-9/rawdata/</p>VibrioharveyiOEApril0011.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-9/rawdata/VibrioharveyiOEApril0011.mrc"
        > <i class="download icon"></i> Download </a></p>

        VibrioharveyiOEApril0011_part121_39.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-04-11-9/3dimage_41317/VibrioharveyiOEApril0011_part121_39.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6f14d-g3932
title: R. sphaeroides Cryosections

description: R. sphaeroides Cryosections strain 593
description: <strong>Tilt Series Date:</strong> 2013-10-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 44000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judith Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-71/rawdata/</p>rhodosectionsatlas20018.mrc,  Tilt Series (Pixel Size 0.32 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-71/rawdata/rhodosectionsatlas20018.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodosectionsatlas20018_part61_4.rec,  Reconstruction (Pixel Size 0.64 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-10-23-71/3dimage_33177/rhodosectionsatlas20018_part61_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.4j8qjp
title: Occurrence Download

description: A dataset containing 694 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micronycteris minuta"
 ]
}

 The dataset includes 694 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047111-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15483/2585067
title: 1991 Los Angeles Travel and Congestion Survey
DOI: 10.15483/2585068
title: 1994 Detroit Household-Based Person Trip Survey
DOI: 10.15483/2585069
title: 1994 Detroit Household-Based Person Trip Survey
DOI: 10.22002/jqeqp-py783
title: CB15N,M2 buffer

description: Raw data files of CB15N,M2 buffer
description: <strong>Tilt Series Date:</strong> 2009-11-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> synchronized in M2 buffer</p>
  aba2009-11-06-8_slicer9766.jpg: twisted filament bundle parallel to membrane .  Caulobacter crescentus
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-8/rawdata/</p>09nov06a_swarmerM2buffer_009.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-8/rawdata/09nov06a_swarmerM2buffer_009.st"
        > <i class="download icon"></i> Download </a></p>

        09nov06a_swarmerM2buffer_009.rec,  Reconstruction (Pixel Size 1.264 nm), 255.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-8/3dimage_9019/09nov06a_swarmerM2buffer_009.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585070
title: 2000 Northeast Florida Household Travel Survey
DOI: 10.15483/2585071
title: 2000 Philadelphia Household Interview Survey
DOI: 10.15483/2585072
title: 2003 Interstate 595 Vehicle Trip-Length Study

description: # 2003 Interstate 595 Vehicle Trip-Length Study
The 2003 Vehicle Trip-Length Study focused on Interstate 595 between Davie Road and University Drive in Florida.

Survey participants answered questions about their trip's origin and destination—including the type of location such as work, home, store, etc.—the on- and off-ramps used, how many people were in the car, and the type of vehicle. The survey also collected household demographic data such as annual household income, available vehicles, the number of people living in their household, and the number of workers in their household above the age of 16. It also asked if they would use proposed bus-only lanes or train service along the corridor, if available.

## Data Collection Agency
The survey was conducted by and for the Florida Department of Transportation.

## Survey Methodology
The survey was conducted via mail and online in March 2003.

## Survey Records, Data, and Documentation
Survey records include 7,917 participants.

Origin and destination locations include street addresses, nearest intersections or landmarks, city, state, zip code, and latitude/longitude.
DOI: 10.15468/dl.ej76ez
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhodeus amarus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 23 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047030-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15483/2585073
title: 2007 Indiana Household Travel Inventory Study
DOI: 10.22002/hk71t-47244
title: Rhodobacter sphaeroides cryosect

description: Rhodobacter sphaeroides JPA 543 with components of the cytoplmasmic array overexpressed
description: <strong>Tilt Series Date:</strong> 2013-09-13</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain from Judy Armitage, sectioned by Mark Ladinsky</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-13-25/rawdata/</p>Rhodobactercryosectionssept0043.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-13-25/rawdata/Rhodobactercryosectionssept0043.mrc"
        > <i class="download icon"></i> Download </a></p>

        Rhodobactercryosectionssept0043_part61_35.rec,  Reconstruction (Pixel Size 0.52 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-13-25/3dimage_31122/Rhodobactercryosectionssept0043_part61_35.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585074
title: 2009 Interstate 95 Express Phase 1A Survey

description: # 2009 Interstate 95 Express Phase 1A Survey
The 2009 Phase 1A Survey focused on commuters using Interstate 95 express lanes between downtown Miami and the Golden Glades Interchange in Florida.

Survey participants answered questions about their trip's purpose, frequency, and mode as well as demographics such as their age, race/ethnicity, and income. It also asked if and why or why not they had used Interstate 95 before and/or after the installation of two high-occupancy toll lanes, if they were satisfied with the upgrade, and about their related perceptions of safety.

## Data Collection Agency
The survey was conducted by and for the Florida Department of Transportation.

## Survey Methodology
The survey was conducted online in May 2009.

## Survey Records, Data, and Documentation
Survey records include 9,156 participants.
DOI: 10.15483/2585075
title: 2012 California Household Travel Survey Supplement

description: # 2012 California Household Travel Survey Supplement
The 2012 California Household Travel Survey Supplement focused on gathering specific travel information from residents for the development of next-generation, activity-based models.

Called the "Augment Survey," it supplemented the  [2010–2012 California Household Travel Survey](https://www.nrel.gov/transportation/secure-transportation-data/tsdc-california-travel-survey).

## Data Collection Agency
The Southern California Association of Governments (SCAG) hired Abt-SRBI, Inc. to conduct the survey.

## Methodology
Travel data were collected from households via in-vehicle (625 vehicles) and wearable (244 participants) global positioning system (GPS) devices.

## Drive Cycle Processing and Filtering
NREL has developed a GPS data filtration routine to filter erroneous data points in individual drive cycles sourced from GPS devices mounted in vehicles. Second-by-second drive cycle data collected from GPS-instrumented vehicles during this survey have passed through NREL's drive cycle processing and filtering routines.

## Survey Records
Study records include 473 households.

## Transportation Data
The SCAG data set contains data from 473 households that participated in one or more areas of study. Of these, 141 completed the wearable GPS portion of the study and 332 completed the vehicle GPS portion. There was no overlap between households participating in the two study areas (wearable and vehicle GPS). For details on available travel survey data and variable definitions, see the [data dictionary](https://www.nrel.gov/media/docs/libraries/tsdc/caltrans_scag_data_dictionary.pdf?sfvrsn=6ec36d7a_1).

NREL-generated drive cycle data are also available for this survey. For details on available data and variable definitions, see the [drive cycle data dictionary](https://www.nrel.gov/media/docs/libraries/tsdc/drive_cycles_data_dictionary.pdf?sfvrsn=7de7e888_1).

Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).
DOI: 10.15483/2585076
title: 2013 Metropolitan Area Planning Agency External Travel Survey

description: # 2013 Metropolitan Area Planning Agency External Travel Survey
The 2013 Metropolitan Area Planning Agency (MAPA) External Travel Survey was conducted to measure and identify travel patterns into, within, and out of the greater Omaha/Council Bluffs metropolitan area in Nebraska. MAPA sponsored the survey in conjunction with the Federal Highway Administration, the Nebraska Department of Roads, and the Iowa Department of Transportation.

## Data Collection Agency
MAPA conducted the survey.

## Methodology
The purpose of the survey was to collect information and data needed as input for MAPA’s travel-demand model. The survey employed a combination of nine survey methods and data-collection activities, including Bluetooth technology, intercept surveys, postcard handouts, travel-time studies, vehicle classification counts, and a web-based survey.

## Survey Records
Survey records include a total of 729 participants.

## Transportation Data
This study provides Bluetooth records and supplementary data for 17,434 passenger trips and 3,123 commercial trips, accounting for 714,218 vehicle miles traveled.

Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).
DOI: 10.22002/3h3et-x8x48
title: Bacillus subtilis ponA mutant

description: JLG639    pbpF::Em pbpG::Km ponA::Sp
description: <strong>Tilt Series Date:</strong> 2013-08-03</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara, UCSFtomo</p>
<strong>Collaborators and Roles:</strong> Javi and Kit Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulating bacteria</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-03-6/rawdata/</p>bs6390006.mrc,  Tilt Series (Pixel Size 0.6 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-03-6/rawdata/bs6390006.mrc"
        > <i class="download icon"></i> Download </a></p>

        bs6390006_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-08-03-6/3dimage_29520/bs6390006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15483/2585077
title: 2013-2014 Greater Fairbanks, Alaska, Transportation Survey

description: # 2013–2014 Greater Fairbanks, Alaska, Transportation Survey
The 2013–2014 Greater Fairbanks Transportation Survey obtained behavior data for regional travel demand modeling. The planning region in Alaska comprised the North Star Borough—known as the PM2.5 nonattainment region—and included the cities of Fairbanks and North Pole.

## Data Collection Agency
The Alaska Department of Transportation and Public Facilities conducted the survey.

## Methodology
Data collection occurred in two phases: the first in fall 2013 and the second in winter 2014. The first phase employed address-based sampling to recruit more than 1,700 households for a one-day personal travel survey, and a sub-sample participated with global position system (GPS) and on-board diagnostic (OBD) loggers installed in their vehicles (282 vehicles) for one week. The purpose of phase one was to better understand the impact of vehicle emissions on air quality in the PM2.5 nonattainment region. Many of the households participating in the vehicle GPS/OBD portion of phase one were asked to participate in phase two.

## Drive Cycle Processing and Filtering
NREL has developed a GPS data filtration routine to filter erroneous data points in individual drive cycles sourced from GPS devices mounted in vehicles. Second-by-second drive cycle data collected from GPS-instrumented vehicles during this survey have passed through NREL's drive cycle processing and filtering routines.

## Survey Records
Survey records include 135 households.

## More Information
For more information about the survey, see the [Greater Fairbanks Transportation Survey Final Report](https://www.nrel.gov/media/docs/libraries/tsdc/greater-fairbanks-transportation-survey-final-report.pdf?sfvrsn=16ecd45b_1).

## Transportation Data
For details on available travel survey data and variable definitions, see the [data dictionary](https://www.nrel.gov/media/docs/libraries/tsdc/akdot_data_dictionary.pdf?sfvrsn=16778e11_1).

NREL-generated drive cycle data are also available for this survey. For details on available data and variable definitions, see the [drive cycle data dictionary](https://www.nrel.gov/media/docs/libraries/tsdc/drive_cycles_data_dictionary.pdf?sfvrsn=7de7e888_1).

Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).
DOI: 10.15483/2585078
title: 2017 National Household Travel Survey - Arizona Add-On

description: # 2017 National Household Travel Survey – Arizona Add-On
The Arizona add-on survey supplements the 2017 National Household Travel Survey (NHTS) with additional household samples and detailed travel behavior for an assigned travel day.

## Data Collection Agency
The Federal Highway Administration conducted the NHTS and corresponding add-on surveys.

## Methodology
This survey documents the demographic, attitudinal, and travel behavior for all members of 2,987 households, as collected from April 2016 to April 2017. Daily travel details provide insight into work and school commutes, non-emergency medical trips, shopping trips, and even how travel differs in the summer and on weekends as compared to a typical weekday when school is in session. When statistically weighted to adjust for survey biases, the data demographically represents all Americans and is appropriate for analysis at the national and census region levels.

## Survey Records
Survey records include a total of 6,081 participants.

## Transportation Data
The NHTS Arizona add-on data package contains a demographic and socioeconomic composition of 6,081 people from 2,987 households in Arizona, as well as detailed information on the travel behavior of each household for a designated 24-hour period. The survey logged more than 258,000 vehicle miles of travel by participants during 19,779 trips.

For details on available data and variable definitions, see the [data dictionary](https://www.nrel.gov/media/docs/libraries/tsdc/data-elements-2017.xlsx?sfvrsn=ad09b18c_3).

Transportation data are available as zipped files. [Download Winzip](http://www.winzip.com/downwz.htm).
DOI: 10.22002/8mps0-qf464
title: lysed E.coli minicells M259Q

description: lysed E.coli minicells M259Qtotal dose of tilt series too low
description: <strong>Tilt Series Date:</strong> 2013-03-22</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> FEIbatchtomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> succrose gradients for isolation, Lysis with Lysozyme</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-10/rawdata/</p>new10.st,  Tilt Series (Pixel Size 0.4171 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-10/rawdata/new10.st"
        > <i class="download icon"></i> Download </a></p>

        new10_part112_3.rec,  Reconstruction (Pixel Size 0.8342 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-03-22-10/3dimage_26004/new10_part112_3.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/6k7e6-98m26
title: Agrobacterium tumefaciens

description: wild type C58
description: <strong>Tilt Series Date:</strong> 2013-06-27</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> wild type induced with AS for T-pili synthesis</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-27-12/rawdata/</p>c580013.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-27-12/rawdata/c580013.mrc"
        > <i class="download icon"></i> Download </a></p>

        c580013_part121_39.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-27-12/3dimage_27721/c580013_part121_39.rec"
        > <i class="download icon"></i> Download </a></p>