cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28691855.v6
title: remote sensing and environmental data

description: 我们通过设计深度学习和机器学习模型实现了遥感影像数据和环境数据的有效融合，进而实现钉螺孳生地的准确预测。
DOI: 10.17632/9869mdrnhj
title: The Proxy Advisory Industry: Influencing and Being Influenced

description: Replication code for paper, "The Proxy Advisory Industry: Influencing and Being Influenced"
DOI: 10.6084/m9.figshare.11870973.v1
title: Proteome database of Enterobacter cloacae EcWSU1

description: <i>Enterobacter cloacae</i> is a Gram-negative facultative anaerobic bacterium of clinical significance. A member of the gut microbiota, certain strains of <i>E. cloacae</i> is known to cause disease, which explains why there is increasing attention on understanding its pathophysiology. This work seeks to provide basic proteomic information of the bacterium by parsing the UniProt proteome file of <i>E. cloacae</i> ECWSU1 using an in-house MATLAB proteome analysis software. Overall, the presented proteome database should be useful in guiding genome editing experiments to understand how loss of function of particular genes affect pathogenesis of this emerging human pathogen. <br><br>
DOI: 10.6084/m9.figshare.16821187.v1
title: Table S1.xlsx

description: The data are relative to the Brazilian territory, the fifth largest country in the world, and help in the discussion of concepts and interpretations of environmental photoperiod. The data available are: latitude, longitude, solar radiation and average monthly and annual day length of the 5,569 Brazilian cities.
DOI: 10.6084/m9.figshare.25562634.v1
title: grainspace wheat g600 1/5 3/5 4/5 5/5

description: grainspace wheat g600 1/5 3/5 4/5 5/5
DOI: 10.6084/m9.figshare.28351319.v1
title: Dataset used for permeability training

description: Dataset used for permeability training
DOI: 10.6084/m9.figshare.28845968.v2
title: Data from: High thermal variation in maximum temperatures invert Brett’s heat-invariant rule at fine spatial scales

description: Discovering how species’ thermal limits evolve and vary spatially is crucial for predicting their vulnerability to ongoing environmental warming. Current evidence indicates that heat tolerance is less spatially variable than cold tolerance among species, presenting a major concern for organismal vulnerability in a rapidly warming world. This asymmetry in thermal limits has been supported by large-scale geographic studies, across latitudinal and elevational gradients (known as Brett´s heat invariant rule). Yet, how critical limits vary across finer spatial scales (e.g., across microenvironments) is less understood. Here, we show that minimum temperatures are more variable than maximum temperatures at large geographic scales (across latitude/elevation), but are less variable at local scales (within sites), guiding spatial asymmetries in thermal tolerances. Using thermal tolerance measurements from amphibians, insects, and reptiles, we confirm the invariance of heat tolerance at large spatial scales and also find more variable heat than cold tolerances at local scales (an inverted Brett’s heat invariant rule at fine spatial scales). Our results suggest that regional or global-level studies will likely obscure fine-scale structuring in thermal habitats and corresponding local heat tolerance adaptation patterns. We emphasize that inferences based on broadscale geographic patterns obscure fine-scale variation in thermal physiology. For instance, a genetic basis for fine-scale variation in thermal physiology may reshuffle spatial and phylogenetic patterns of vulnerability.
DOI: 10.6084/m9.figshare.8312147.v1
title: Appendix I.docx

description: Incidence of fracture by age, "low bone mineral density" status and prior fracture<br>
DOI: 10.17632/9rcv8mm682
title: Safety Helmet detection with Extended Labels 5K images (SHEL5K)

description: We extended the number of labels in Kaggle’s safety helmet detection dataset, which has 5000 images and 5000 annotations. The original dataset had three classes (person, head and helmet) and a total of 2501 labels. Moreover, the original dataset was incompletely labelled. We added three new labels on the dataset in results, the new labels consists of six classes (helmet, head with helmet, person with helmet, head, person no helmet, and face) and total of 75578 labels.
DOI: 10.6084/m9.figshare.1040412.v2
title: Data for "Strepsiptera, phylogenomics and the long branch attraction problem"

description: We provide the single gene alignments (fasta format) before concatenation, the concatenated alignment that was used in the analyses, and the sets of CDSs predicted by Trinity from the RNA-seq reads for the species we sequenced.
DOI: 10.6084/m9.figshare.14079920.v1
title: Octoless_and_wMelPop2

description: This repository contains the data and analysis for the manuscript:<br>Forward genetics in <em>Wolbachia</em>: Regulation of <em>Wolbachia</em> proliferation by the amplification and deletion of an addictive genomic island<br>Elves H Duarte, Ana Carvalho, Sergio López-Madrigal, João Costa, Luís Teixeira
DOI: 10.6084/m9.figshare.23652477.v2
title: Responses - Depression, anxiety, and stress among adolescents in Shivamogga, Karnataka

description: Excel sheet detailing the data about the manuscript.
DOI: 10.6084/m9.figshare.28628162.v2
title: <b>Using a cash transfer plus SMS nudge package to improve the wellbeing among caregivers of adolescents living with HIV during the COVID-19 epidemic in South Africa: A pilot randomised controlled trial</b>

description: <b>Background: </b>The mental and financial strain linked to unpaid caregiving has been amplified during the COVID-19 pandemic. In sub-Saharan Africa, carers of adolescents living with HIV (ALHIV) are critical for maintenance of optimum HIV treatment outcomes. However, the ability of caregivers to provide quality care to ALHIV is undermined by their ability to maintain their own wellbeing due to lack of finances and poor mental health. Nudges are a behavioural economics strategy used to influence healthcare decision-making by targeting behavioural barriers. Nudges such as cash incentives and SMS reminders are linked to improved health and wellbeing. There is a lack of evidence on whether these nudges could promote caregiver wellbeing during COVID-19.<br><b>Objectives:</b> To compare the feasibility, acceptability and preliminary effectiveness of an economic incentive nudge package (cash + motivational SMS) for improving caregiver wellbeing.<br><b>Methods: </b>We conducted a pilot individual-randomised controlled trial (November 2021-March 2022), with N=100 caregivers of ALHIV (10–19-year-olds), sampled from HIV clinics in Durban, KwaZulu-Natal. Participants were randomly assigned to the intervention or control arm. The intervention arm (n=50) received an unconditional cash incentive (~ $23 USD) via mobile banking services and a positive wellbeing SMS per month, over a three-month period. The control arm (n=50) received one standard SMS encouraging linkage to care. The intervention was co-designed with our caregiver advisory board. The nudge targeted three behavioural economic principles (aspiration framing, altruism, loss aversion), drawing on facilitators of wellbeing in this setting. Participants were interviewed at baseline and end-line (12 weeks) to collect socio-demographic, health, and wellbeing data. The primary outcome was change in wellbeing measured using the Mental Health Continuum Short-Form. Caregivers (n=8) in each arm underwent in-depth interviews to understand lived experiences and perceptions of the intervention. An intention-to-treat analysis was conducted. Qualitative data were analysed using the framework method. For more information on the trial, contact Dr Darshini Govindasamy (Darshini.Govindasamy@mrc.ac.za).
DOI: 10.6084/m9.figshare.6235481.v1
title: Spatial variability in soybean seeds quality and in chemical attributes of the soil of a production field in the Brazilian Cerrado

description: Abstract: The objective of this study was to evaluate the spatial variability in soybean seeds quality and in soil chemical attributes of a production field. Data were collected at 138 georeferenced points of a soybean production property located in Santo Antônio de Leverger - MT. Soil related variables, such as phosphorus, potassium, calcium, magnesium, and organic matter (OM) contents, pH, cation exchange capacity (CEC) and base saturation (V%) were evaluated. On the other hand, yield, one thousand seed mass, size, germination, emergence in seedbed, electrical conductivity, accelerated aging and tetrazolium reaction were evaluated as seed variables. The data were submitted to descriptive and geostatistical analysis, and the fit semivariogram parameters were used to elaborate spatial distribution maps of the analyzed variables. After the analysis, it was possible to conclude that there was spatial variability in the evaluated attributes for both seeds and soil related variables, indicating that the soybean seed production area can be divided into management zones, which allows the definition of areas to be harvested or discarded within a field of seed production.
DOI: 10.17605/osf.io/athnw
title: A Systematic Review on Efficacy, Mechanisms, and Future Directions of Psychobiotics

description: Evaluation of probiotics activity in neurologic and psychiatric conditions
DOI: 10.17632/8km8958jfh
title: Bessel functions J n (z) and Y n (z) of integer order and complex argument

description: Abstract This paper describes computer subroutines which were developed to compute Bessel functions of the first and second kind (J_n (z) and Y_n (z), respectively) for a complex argument z and a range of integer orders. A novel way of determ ining the starting point of backward recurrence is used, and the algorithm for Y_n (z) improves on previous algorithms in terms of accuracy and restrictions on the range of orders. Title of program: BESCJY Catalogue Id: ACPH_v1_0 Nature of problem Bessel functions arise in the mathematical solution of physical problems, formulated in cylindrical and spherical coordinate systems. The CBESJY subroutine computes Jn(z) and Yn(z) for complex argument z and a sequence of integer orders n from M to N, where N &gt;= 1 and M &lt;= 0. Versions of this program held in the CPC repository in Mendeley Data ACPH_v1_0; BESCJY; 10.1016/0010-4655(93)90153-4 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/k9c7y7gxrp
title: Matllab tool for muscle activity analysis based on multi-channel SEMG

description: The presented software for analysis of muscle coordination obtained during periodic movement is based on multi-channel surface EMG processing. Output data of software includes analysis of averaged SEMG profiles and muscle activity timing. The algorithm is available as MATLAB standalone executable application with free access. Attachment of zip file contain demo SEMG data of gait, running and rowing. Input data are imported into software in MAT-file or Comma-separated values format with a structure described in the attached user manual. This software could help to make multichannel SEMG analysis more time-effectively.
DOI: 10.17632/vt4xjss66j
title: 空调集群的需求响应潜力分析数据

description: 本数据集基于Umass数据集、美国Austin地区居民用户用电数据集、中国某省台区用电数据进行空调集群的需求响应潜力分析
DOI: 10.6084/m9.figshare.27895620.v1
title: Binary tree cover maps derived from the Global Forest Change dataset

description: The amount of tree cover around forest remnants was calculated using 30-m-resolution global maps of forest extent and change from 2000 through 2023, version 1.11 (Hansen et al. 2013). Each pixel value represents the percentage of canopy closure for all vegetation taller than 5 m in height for the year 2000, which was classified as either forest (≥ 50% tree cover) or non-forest (Hasui et al. 2024). Therefore, such binarization is used loosely, as tree cover can comprise both natural forests and tree plantations (e.g., monocultures of oil palm, rubber, or eucalypt) (Tropek et al. 2014). Despite this, tree cover mostly represents natural forests, and tree plantations are a high-quality matrix type for forest species, given the structural similarity between the habitat (forest) and the matrix (tree plantation) (Prevedello & Vieira 2010). When bird surveys were conducted before 2002, we used the tree cover map for the year 2000. For surveys conducted from 2002 to 2017, we updated the tree cover map by subtracting the cumulative forest loss from 2001 up to the year prior to each survey’s first year (Moulatlet et al. 2021).
DOI: 10.6084/m9.figshare.28595150.v1
title: The annotation files of <i>Aulacomnium turgidum </i>and <i>Polytrichastrum alpinum</i>

description: The Arctic moss Aulacomnium turgidum and the Antarctic moss Polytrichastrum alpinum play crucial roles in the ecosystems of polar regions, contributing significantly to biodiversity and ecological stability. We sequenced and de novo assembled the genomes of A. turgidum and P. alpinum using a combination of Illumina short reads, Nanopore long reads, and Hi-C scaffolding technology. The genome sizes are 277.84 Mb for A. turgidum and 498.33 Mb for P. alpinum, anchored to 11 chromosomes and 8 chromosomes, respectively. Both species exhibit a sex chromosome with distinct genomic characteristics. The genomes encode 25,999 protein-coding genes in A. turgidum and 28,070 in P. alpinum.
DOI: 10.6084/m9.figshare.28781735.v1
title: Appendix of "Can People Flow Enhance the Shared Energy Facility Management?"

description: To maintain clarity and aesthetic conciseness, we have omitted the detailed SFM modeling and NSGA-III optimization sections from the main manuscript. These components are provided as an appendix and can be accessed here.
DOI: 10.6084/m9.figshare.7757069.v1
title: Assessing the performance of 38 machine learning models: the case of land consumption rates in Bavaria, Germany

description: Machine learning (ML) is at the forefront of land-use change modeling. Due to numerous available ML approaches, the model choice is complex and usually based on ad hoc decisions, though informed through a few comparative studies that considered a limited number of models. This study contributes a comprehensive comparison of 38 ML models to examine land consumption rates (LCR) (i.e. the transition of landscapes to built-up areas). We modeled LCR for 2009–2015 in Bavaria, Germany, and predicted rates for 2015–2021 at a municipality level. To assess the performance of each approach, we measured the mean absolute error (MAE), the root-mean-square error (RMSE), and the coefficient of determination (R2) using cross-validation. All algorithms consistently predicted that the land consumption rate for Bavaria will increase. eXtreme gradient boosting decision trees performed best with respect to the RMSE (0.500) and R2 (0.183), while the support vector machine with polynomial kernel has the lowest MAE (0.288). The generalized additive model and the random forest models also performed well. We recommend these ML approaches for future land consumption and land-use change studies. A poor performance was found for recursive partitioning by decision trees, self-organizing maps, and partitioning using deletion, substitution, and addition moves.
DOI: 10.6084/m9.figshare.c.3706687_d2.v1
title: Whistle 001

description: Bottlenose dolphin whistle in a .wav file
DOI: 10.17632/mthvjjhyn3
title: Korean women with infertility

description: N=186 Women with infertility Participants were asked to fill in the online survey, which included the following scales: The Korean adaptation of the Patient Health Questionnaire-9 (PHQ-9), the Multidimensional Scale of Perceived Social Support (MSPSS), and the Fertility Quality of Life (FertiQoL) tool.
DOI: 10.17632/sp2cgvd9sg
title: db_Alcool

description: These data were used for the analysis and drafting of the study entitled: Prevalence and determinants of alcohol consumption among adults living in the Moungali district of Brazzaville: a cross-sectional population survey. These are data on 722 adult individuals.
DOI: 10.17632/vykj97vdgg
title: Papular Acne Keloidalis Nuchae Treatment Success Using Follicular Unit Excision

description: Supplemental Video: Video demonstrating the method of use of the UGraft Zeus in FUE of AKN hair follicles, including the minimal assist navigational capability.
FUE, follicular unit excision; AKN, Acne keloidalis nuchae

Supplemental Figure 1:  Hematoxylin and eosin staining of Papular AKN lesion: Vertical section shows dense parakeratosis, acanthosis of the epidermis, with fibrosis, and dense inflammatory infiltration of the superficial and deep dermis with neutrophils, plasma cells, and lymphohistiocytes. Magnification 10x
AKN, Acne keloidalis nuchae

Supplemental Figure 2:  Straight follicular unit grafts excised from papular AKN lesions of a Hispanic patient using a 17G FUE punch,
DOI: 10.6084/m9.figshare.22761191.v1
title: HMAP Dataset 01: SE Australian Trawl Fishery I

description: On 28 November 1991, the New South Wales Department of Agriculture and Fisheries provided historical data relating to the South East Fishery (SEF) to the Bureau of Resource Sciences (BRS) in accordance with the Fishing Industry Research and Development Corporation (FIRDC)-funded ‘historic SET catch data’ project. The data were originally collected by CSIRO and handed over to NSW Fisheries when CSIRO ceased work in the 1960s on what was then known as the ‘South East Trawl Fishery’. These data cover the periods 1918-1923, 1937-1943 and 1952-1957. No documentation exists for these data except for a simple description of the data field names. This document describes the processing carried out, and the assumptions made, to convert the data into a format suitable for inclusion in the Australian Fishing Zone Information System (AFZIS). This format, in turn, was adapted to render the data compatible with the HMAP/OBIS schema.
DOI: 10.6084/m9.figshare.24004098.v1
title: Supplementary Material for: Intra-abdominal paraganglioma and primary thyroid lymphoma in a single patient: the first case report

description: Rare diseases such as primary thyroid lymphoma (PTL) and paragangliomas exist. Although only 0.5% of patients experience a transformation from thyroiditis to PTL, patients with Hashimoto's thyroiditis have a higher risk of developing PTL than the general population. Primary non-Hodgkin lymphoma of the thyroid is rare. Paragangliomas are neuroendocrine tumors that originate from chromaffin cells situated along the sympathetic and parasympathetic chains. This paper reports the first case of primary diffuse large B-cell lymphoma with nonfunctional paraganglioma. A 29-year-old female, presented with an enlarged neck and recurring compressive symptoms. Ultrasonography (US) results showed a nodule in the right lobe of the thyroid gland. Emergency thyroidectomy was performed after obtaining inconclusive fine-needle aspiration (FNA) results. Immunohistopathology of the biopsy specimen confirmed the presence of a large diffuse B-cell lymphoma. Computed tomography revealed a non-functional mass in the adrenal gland. The team then proceeded with the appropriate treatment.
DOI: 10.6084/m9.figshare.25826839.v1
title: CVRR dataset for trajectory clustering

description: Six trajectory clustering datasets (Morris and Trivedi, 2009) are provided for benchmarking trajectory clustering algorithms. These datasets cover a diverse range of scenes to enable thorough evaluation of different algorithms. The datasets include three simulated highway scenes, a real highway scene, a simulated intersection scene, and an indoor omnidirectional camera scene.These datasets originate from the work by Morris and Trivedi (2009), described in their paper "Learning trajectory patterns by clustering: Experimental studies and comparative evaluation," presented at the 2009 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) Workshops. The datasets provide a valuable resource for the trajectory clustering community, enabling comparative evaluation and benchmarking of various clustering algorithms. The datasets can be accessed through the following DOI link: https://doi.org/10.1109/CVPR.2009.5206559.
DOI: 10.6084/m9.figshare.27016483.v1
title: Admixture f3 statistics, with inbreeding

description: F3 statistics generated by Admixtools qp3Pop function, with inbreeding accounted for.
DOI: 10.6084/m9.figshare.1507560.v1
title: Permeability data from Luijendijk and Gleeson 2015, Table S1

description: grain size, clay mineralogy, porosity, and permeability data on pure sand and silt, pure clay, and natural mixtures of sand, silt and clay.
DOI: 10.6084/m9.figshare.19682226.v2
title: Supplementary Material 3

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.5121397.v1
title: Supplementary Material for: Spatiotemporal Localization of Periostin and Its Potential Role in Epithelial-Mesenchymal Transition during Palatal Fusion

description: The medial epithelial seam (MES) between the palatal shelves degrades during palatal fusion to achieve the confluence of palatal mesenchyme. Cellular mechanisms underlying the degradation of MES have been proposed, such as apoptosis, epithelial-mesenchymal transition (EMT) and migration of medial edge epithelia (MEE). Extracellular matrix components have been shown to play an important role in EMT in many model systems. Periostin (also known as osteoblast-specific factor-2) is a secreted mesenchymal extracellular matrix component that affects the ability of cells to migrate and/or facilitates EMT during both embryonic development and pathologic conditions. In this study, we evaluated the spatiotemporal expression patterns of periostin during mouse palatal fusion by in situ hybridization and immunofluorescence. Periostin mRNA and protein were present in the palatal mesenchyme, the protein being distributed in a fine fibrillar network and in the basement membrane, but absent from the epithelium. During MES degradation, the protein was strongly expressed in the basement membrane underlying the MES and in some select MEE. Confocal microscopic analysis using an EMT marker, twist1, and an epithelial marker, cytokeratin 14, provided evidence that select MEE were undergoing EMT in association with periostin. Moreover, the major extracellular matrix molecules in basement membrane, laminin and collagen type IV were degraded earlier than periostin. The result is that select MEE establish interactions with periostin in the mesenchymal extracellular matrix, and these new cell-matrix interactions may regulate MEE transdifferentiation during palatal fusion.
DOI: 10.6084/m9.figshare.23504877.v1
title: Geographic coordinates of specimens of Rafflesia and Tetrastigma species in the Philippines

description: Geographic coordinates of specimens of Rafflesia and Tetrastigma species in the Philippines
DOI: 10.6084/m9.figshare.25305250.v2
title: Data from: Testing the applicability of environmental DNA metabarcoding to landscape genetics

description: Data for "<b>Testing the applicability of environmental DNA metabarcoding to landscape genetics</b>"Nakajima S. & Tsuri K. (2024) Molecular Ecology Resourceshttps://doi.org/10.1111/1755-0998.13990<br>"eDNA_hapmap.xlsx": Number of read counts for each site × haplotype from the eDNA samples."tissue_hapmap.xlsx": Number of individuals for each site × haplotype from the tissue samples."tissue_SNP.vcf": VCF file obtained by the MIG-seq method."readGDfunc_rev.r": R code calculating genetic diversity and differentiation statistics from site × haplotype data."waterwayDistance.xlsx": Waterway distance between sampling sites.
DOI: 10.6084/m9.figshare.8143031.v1
title: Market survey 2019 rawdata

description: Raw data and descriptive statistic data of the market survey performed with the Add-In XLSTAT 2009.1.02 is provided as Excel-file (CSV). The data include file name, sample name, area, calculated N<sub>2</sub>O amounts, test result and statistical values.