cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/ht3ncvtkn2
title: When Failure is an Option: Fragile Liquidity in Over-the-Counter Markets

description: This repository is a comprehensive resource accompanying the paper "When Failure is an Option: Fragile Liquidity in Over-the-Counter Markets" by Terrence Hendershott, Dan Li, Dmitry Livdan, Norman Schürhoff. It includes source codes and datasets for replicating and extending the study's analysis on the total cost of immediacy (TCI) in over-the-counter markets. 

To effectively use this repository, users must adjust the directory paths within the Stata code to match their local environment. The repository supports switching between real and simulated data by setting a global variable in the source code.

The replicator should expect the code to run for between 3 days and 1 week.

Repository contents:
1. Original Stata Source Code: Implements the methodologies for calculating TCI, using both optimal and constrained quantile rotations. This code is the core for reproducing the main results presented in the paper. 
2. Simulated Data Generation Code: Written in Stata, this script produces simulated datasets that mimic the data used in the study. It allows for the examination of TCI for different tranches under various hypothetical market conditions. 
3. Simulated Input Datasets: Three tranches of pre-generated simulated data are included. These datasets serve as ready-to-use examples for computing TCI, facilitating the analysis without the need for initial data generation. 
4. Log File: Contains the output from applying the original source code to the simulated datasets. The log illustrates the expected results and serves as a benchmark for verifying the correct execution of the code.
DOI: 10.6084/m9.figshare.1194907.v1
title: Cross-citation patterns between reviewers (REV-C)

description: Described in Materials and Methods Boyack, Chen, and Chacko (PLOS One, 2014) DOI: 10.1371/journal.pone.0104244
DOI: 10.6084/m9.figshare.25847761.v1
title: The 1KCIGP genomic variations

description: The dataset contained the 1KCIGP reference panel, indel sites, and structural variations.
DOI: 10.6084/m9.figshare.26894038.v1
title: Data Set Article ID: 1433557

description: This study aims to investigate how DNA methylation-mediated silencing of FGFR1 contributes to the enhancement of NF-κB signaling, thereby influencing the progression of asthma.
DOI: 10.6084/m9.figshare.28852592.v1
title: Blended Learning as a Novel Teaching Learning Activity: Student Perceptions, Engagement, and Performance Outcomes - data collected via the google sheet circulate among students

description: Blended Learning as a Novel Teaching Learning Activity: Student Perceptions, Engagement, and Performance Outcomes - this contains data collected via the google sheet circulate among the students
DOI: 10.6084/m9.figshare.29119391.v1
title: Table 2: Soybean vein necrosis virus segment-specific primers and PolyT-R, used for rapid amplification of 5' end and 3' end RACE protocols.

description: Table 2: Soybean vein necrosis virus segment-specific primers and PolyT-R, used for rapid amplification of 5' end and 3' end RACE protocols.
DOI: 10.6084/m9.figshare.20063267.v2
title: Caatinga_SM.zip

description: Supporting Information Data_S1 from Costa-Pinto et al. (2022).Small mammals from the Caatinga: a dataset for the Brazilian semiarid biome". Ecology. 1- Caatinga_SM_loc.csv 2- Caatinga_SM_rec.csv
DOI: 10.6084/m9.figshare.26889598.v1
title: <b>Pangolin scales as adaptations for innate immunity against pathogens</b>

description: Supplementary Figures, Supplementary Tables, Supplementary Methods, and Original Data from this study, are presented as Additional file A, Additional file B, Additional file C, and Additional file D, respectively. <br><b>Additional </b><b>f</b><b>ile </b><b>A</b><b>:</b> Figures S1-S8. Figure S1: Species identification of pangolin scales used in the metagenomic analyses. Figure S2: Bacterial 16S gene PCR amplification. Figure S3: Scale microbiome analyses at the genus level. Figure S4: Genome reconstruction and completeness of the topmost abundant bacteria species generated from whole-genome shotgun sequencing data. Figure S5: Species identification of pangolin scales used in the proteomic and metabolomic analyses. Figure S6: Comparative analysis of 94 scale protein-set. Figure S7: Metabolomic and proteomic differences. Figure S8: Comparative metabolomics analysis between scale and skin surface.<b>Additional </b><b>f</b><b>ile </b><b>B</b><b>:</b> Tables S1-S16. Table S1: A list of sequences used in this study. Table S2: Summary stats of scale microbiomes. Table S3: List of 61 prominent proteins identified in pangolin scale. Table S4: GO term enrichment analysis of 61 scale proteins. Table S5: Distribution of 61 scale proteins across exosome-producing cells and tissues. Table S6: STRING-annotated 61 proteins identified in pangolin scale. Table S7: List of 94 prominent proteins identified in pangolin scale. Table S8: Gene Ontology Biological Process enrichment analysis of 94 scale proteins using STRING database. Table S9: Distribution of 94 scale proteins across exosome-producing cells and tissues. Table S10: List of 78 prominent metabolites identified in pangolin scale. Table S11: Screening of 33 metabolites in pangolin scales for antibacterial effects at 12 hours. Table S12: Minimum inhibitory concentration (MIC) of metabolite or combination of metabolite against <i>E. coli </i>and <i>S. aureus</i>. Table S13: Minimum Bactericidal Concentration (MBC) of metabolite combination against<i> E. coli</i> and <i>S. aureus</i><i>. </i>Table S14: List of 70 metabolites identified on the skin surface of pangolins. Table S15: List of 12 differentially expressed metabolites between scale and skin. Table S16: List of 14 proteins identified on the skin surface of pangolins].<b>Additional </b><b>f</b><b>ile </b><b>C</b><b>:</b> Systemic methodologies for this study.<b>Additional file D:</b> Original images from this study.
DOI: 10.6084/m9.figshare.28905203.v1
title: 源自 2,2¢-联吡啶的乙烯基连接共轭聚合物框架，用于可见光驱动的 H<sub>2</sub>O<sub>2</sub>代

description: 使用 4,4'，6,6'-四甲基-2,2'-联吡啶通过 Knoevenagel 缩合构建两个乙烯基连接的 CPP。它们具有调谐的带结构、宽光吸收能力，并且在有或没有牺牲剂的情况下都能在水中产生出色的光催化 H₂O₂。
DOI: 10.6084/m9.figshare.5129878.v1
title: Supplementary Material for: Diagnosis of Severe Fetomaternal Hemorrhage with Fetal Cerebral Doppler: Case Series and Systematic Review

description: <b><i>Objectives:</i></b> To analyze the role of middle cerebral artery (MCA) peak systolic velocity (PSV) in the prediction of severe fetomaternal hemorrhage (FMH) and to compare it with standard biophysical assessment. <b><i>Data Sources:</i></b> Retrospective review of cases of FMH seen in our unit and systematic review of the literature. <b><i>Results:</i></b> We followed the MOOSE guidelines to review the literature. From 838 articles, 16 were selected. In total, 35 women, including 3 cases from our center and 32 obtained from the literature search were included. Diagnosis of FMH was always confirmed by laboratory tests. Patients were seen at 31 ± 5 weeks' gestation (range 16-39) and the most frequent indication for referral was decreased perception of fetal movements. Cardiotocography (CTG) upon admission was sinusoidal in 18 cases, nonreactive in 6, decelerative in 2 and tachycardic in one. MCA-PSV was abnormal in all cases but one. There were 2 perinatal deaths. The mean hemoglobin concentration at birth or at intrauterine transfusion was 4.8 ± 1.9 g/dl. <b><i>Discussion:</i></b> The most accurate predictor of FMH was fetal MCA-PSV. CTG was always abnormal but the pattern was frequently nonspecific. We suggest including fetal cerebral Doppler in the evaluation of patients with decreased fetal movements, particularly in those cases with ambiguous results of biophysical testing.
DOI: 10.17632/b2tzk9d624
title: Teaching and Learning English as a Foreign Language: A Comprehensive Approach

description: The aim of this book is to provide a compromise between past and present theories of language teaching and learning.
DOI: 10.6084/m9.figshare.12783035.v1
title: Supplementary Material for: Plasma P-Selectin Is Inversely Associated with Lung Function and Corticosteroid Responsiveness in Asthma

description: <b><i>Background:</i></b> Severe asthma has multiple phenotypes for which biomarkers are still being defined. Plasma P-selectin reports endothelial and/or platelet activation. <b><i>Objective:</i></b> To determine if P-selectin is associated with features of asthma in a longitudinal study. <b><i>Methods:</i></b> Plasmas from 70 adult patients enrolled in the Severe Asthma Research Program (SARP) III at the University of Wisconsin-Madison were analyzed for concentration of P-selectin at several points over the course of 3 years, namely, at baseline (BPS), after intramuscular triamcinolone acetonide (TA) injection, and at 36 months after baseline. Thirty-four participants also came in during acute exacerbation and 6 weeks after exacerbation. <b><i>Results:</i></b> BPS correlated inversely with forced expiratory volume in 1 s (FEV<sub>1</sub>) and with residual volume/total lung capacity, an indicator of air trapping. BPS was inversely associated with FEV<sub>1</sub> change after TA, by regression analysis. FEV<sub>1</sub> did not change significantly after TA if BPS was above the median, whereas patients with BPS below the median had significantly increased FEV<sub>1</sub> after TA. BPS was higher in and predicted assignment to SARP phenotype cluster 5 (“severe fixed-airflow asthma”). P-selectin was modestly but significantly increased at exacerbation but returned to baseline within 3 years. <b><i>Conclusions:</i></b> High BPS is associated with airway obstruction, air trapping, the “severe fixed-airflow” cluster, and lack of FEV<sub>1</sub> improvement in response to TA injection. P-selectin concentration, which is a stable trait with only modest elevation during exacerbation, may be a useful biomarker for a severe asthma pheno- or endotype characterized by low pulmonary function and lack of corticosteroid responsiveness.
DOI: 10.6084/m9.figshare.27951513.v1
title: manta-Declarative Knowledge

description: Declarative Knowledge
DOI: 10.6084/m9.figshare.28853331.v1
title: Japan from Modelling the diffusion dynamics and scaling properties of foreign cultures in China through hashtag patterns

description: Researching raw data on Japanese culture relevant hashtags
DOI: 10.6084/m9.figshare.27180252.v1
title: Figure 3: Sensitivity of glycolaldehyde sensors

description: Maximal OD600 as function of concentrations of glycolaldehyde tested in the PLP-aux and 2KG-aux strains
DOI: 10.6084/m9.figshare.28600535.v1
title: Data and code for the paper "Intensifying neighbouring tree competition suppresses tree growth at the eastern Tibetan treeline"

description: This dataset include the main data and the R code for the paper "Intensifying neighbouring tree competition suppresses tree growth at the eastern Tibetan treeline".
DOI: 10.6084/m9.figshare.11462469.v5
title: Genotype dataset for sorghum association panel (SAP)

description: The VCF file includes unimputed SNPs. Users can do quality controls for their own purposes. The imputed SNPs were saved in HapMap format which is ready to run GWAS. The Beagle software was used to do the imputation. If you are going to use this dataset in your publication, please cite this paper:<br>Chenyong Miao, Yuhang Xu, Sanzhen Liu, Patrick S. Schnable, and James C. Schnable (2020) Increased power and accuracy of locus identification in time-series genome-wide association in sorghum. Plant Physiology doi: 10.1101/2020.02.16.951467<br>
DOI: 10.6084/m9.figshare.11952558.v1
title: MS1-NIST1950-POS

description: MS1 positive NIST 1950 samples data for rmwf(Reproducilble Metabolomics WorkFlow) package.
DOI: 10.6084/m9.figshare.22232056.v1
title: Bulk and single-cell RNA-seq data

description: The bulk and single-cell RNA-seq data of DC lineage cells sorted from blood, spleen and bone marrow from mice.
DOI: 10.6084/m9.figshare.28806515.v1
title: Predicting the next location of urban individuals via a representation-enhanced multi-view learning network

description: data
DOI: 10.6084/m9.figshare.21225287.v1
title: CXR_Challenge_QUBIQ_21_COVID19_Perc_Estimation

description: All the datasets of the notable challenges backed up in case.
DOI: 10.6084/m9.figshare.25345669.v1
title: Harmony of Opposites: Classical Source Texts and Translations

description: A collection of quotes about the harmony of opposites were assembled and chosen from Classical Greek and Chinese Philosophers. These quotes are presented in their original language with transliteration and translation provided in a line-by-line format. For Heraclitus and the Pythagoreans, the Loeb Classical Library was used to review early and late sources in the original Greek. Aristotle’s book 1 of the Metaphysics is the main primary source text for many of the Pythagorean quotes. The Loeb Library provides material in the original Greek as well as an English translation. The quotes from Chinese philosophers were initially sourced based on scholarship primarily from Chenyang Li and Chung Ying-Cheng. Then, the original Chinese source material was gathered from the Chinese Text Project. Each chosen quote will be shared in tabular form, with the original language (Greek or Chinese) along with new transliterations and translations. The transliterations each come from OpenAI’s GPT4, with various edits. The translations are based on a consideration of multiple existing translations, including those from GPT4. Each line is rendered with alignment, so that comparisons with the Greek can be readily made by those who wish to do so. Efforts were made to retain the word order and to use appropriate cognates in order to facilitate connection with the original. The goal of this sourcing and translation is to make these early texts more accessible to non-specialists. The other primary goal of this method is to highlight important meanings that are not always clear in existing translations.<br>
DOI: 10.6084/m9.figshare.25246789.v1
title: Data from: Increased connections among soil microbes and microfauna enhances soil multifunctionality along a long-term restoration chronosequence

description: 1. 土壤微生物在退化土地恢复中的功能作用受到微生物群落内部和之间的相互作用以及高营养级土壤生物（微型动物）的极大影响。然而，对于土壤微生物及其共存的微生物之间连接模式的变化如何导致生态系统恢复过程中土壤功能的相关变化知之甚少。2. 本研究以黄土高原原前耕地为研究对象，沿50年恢复时间序列，评估了植树造林和自然再生方式对土壤微生物与其共存微生物之间连接模式的影响。定量评估了土壤网络连接、微生物功能关联和多种土壤功能（如多功能性）之间的关系。3. 尽管与最近被遗弃的地点相比，植树造林和自然再生方法都增强了土壤微生物与其共存的微生物之间的联系，但在整个恢复时间序列中，这两种方法之间的联系趋势是相反的。植树造林导致土壤微生物和微型动物物种数量增加，具有单峰连接模式，而自然更新导致土壤网络连接在演替过程中不断增加。土壤网络连接的增加，特别是土壤微生物与微生物和微生物界间连接的增加，与微生物功能关联的增强相对应。编码不同中枢功能途径的微生物功能基因之间存在显著相关性，而微生物功能基因又与土壤多功能性呈正相关。4.<i> </i><i>合成与应用。</i> 土壤微生物与其共存的微生物之间连接的变化与土壤多功能性的变化呈正相关，由微生物功能关联介导。在早期恢复阶段，植树造林后的土壤网络比自然再生后的土壤网络包含更多的连接，而在后期的恢复阶段，植树造林网络的连接数量下降，最终被自然再生后的土壤网络所超越。这些发现引发了人们对黄土高原历史草地植树造林措施生态可持续性的关注，表明自然再生是实现长期生态恢复成功的首选方法。
DOI: 10.17632/zht2hgjwm7
title: Universal Model for Multi-Factor Forecasting and Estimation of ETo

description: Evapotranspiration is a pivotal process in the ecosystem, and accurately forecasting short-term daily reference crop evapotranspiration (ETo) is of paramount importance for real-time irrigation decision-making and regional water resource allocation. In the provided "research" folder, there are four subfolders. The "data" folder contains weather forecast data and historical observation data for 100 sites involved in our research, available for readers to use and debug. The "Quantitative transformation model" folder offers deep learning models we have trained to transform qualitative data into quantitative data. These models can convert the quantitative data from weather forecasts—specifically weather conditions and wind speed ratings—into specific values of radiation and wind speed. Model inputs need to include the latitude and longitude of the location being used, the day number for conversion, and the quantitative data. The "Estimating model" folder includes simulation models provided based on high-precision meteorological data. Inputs E1-E5 correspond respectively to temperature, temperature and radiation, temperature and wind speed, temperature and coordinates with day number, and temperature along with all aforementioned inputs. Among these, E5, which combines all inputs, has the highest model accuracy. Taking GRU as an example, its RMSE is between 0.13-0.14 mm/d, R2 ranges from 0.98-0.99, MAE is between 0.08-0.09, and NRMSE is within 0.018-0.019. Lastly, the "Forecasting model" folder provides corresponding prediction models for 1, 4, 7, and 15 days.
Since our study area is China, all the training data used are sourced from regions within China, with specific models incorporating information such as latitude and longitude. Therefore, these models cannot be directly applied to other regions. The obtained ETo (Evapotranspiration) data can be utilized according to your needs in remote sensing systems or crop models for applications in irrigation management and smart agricultural production. This tailored approach ensures that the data is most effective within the specified geographical context, facilitating precise and efficient agricultural practices.
DOI: 10.6084/m9.figshare.10038221.v1
title: MOESM1 of Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome

description: Additional file 1: A tab-delimited table in which each row is a hotspot-SNP pair in our original dataset, and columns are positions of hotspots and SNPs, rs(reference SNP ID) number of SNPs and LDsplit P-values and q-values. (TXT 5 MB)
DOI: 10.6084/m9.figshare.16706458.v2
title: 2-DOF robot data of position control and tip trajectory tracking

description: This dataset covers the control of 2-DOF robot in terms of point-to-point position control and tip trajectory tracking of the robot.
DOI: 10.6084/m9.figshare.17087135.v1
title: Five studies evaluating the impact on mental health and mood of recalling, reading, and discussing fiction

description: These are the data associated with the paper, "Five studies evaluating the impact on mental health and mood of recalling, reading, and discussing fiction"
DOI: 10.6084/m9.figshare.24195588.v1
title: Whole genomes show contrasting trends of population size changes and genomic diversity for an Amazonian endemic Passerine over the Late Quaternary

description: <b>Metadata:</b> "Willisornis_Sequenciados_BancodeDados.csv"<b>VCF file with outgroup for phylogenetic analyses:</b> "WILLISORNIS_trees.vcf"<b>VCF file without outgroup for population genomics analyses:</b> "WILLISORNIS_popgen.vcf"<b>Codes for genomic analyses: </b>"00.Initial_Edits_GenoFile.docx"<b>R Codes:</b> R files from 01-03.
DOI: 10.6084/m9.figshare.26362135.v2
title: <i>Cimex_lectularius</i>

description: Table_S1: Public RNA sequencing data used in this study.Table S2: RNA sequencing reads in susceptible and resistant strains.Table_S3: The counts and ratio of repeats annotated by RepeatModeler and RepeatMaskerTable_S4: The full result of Fanflow4InsectsTable_S5: 729 transcripts with resistance-specific mutationsTable_S6: The LD50 value and resistance ratio of each strain to DinotefuranTable_S7: Detail results of Metascape when using <i>Homo sapiens </i>gene IDTable_S8: Detail results of Metascape when using <i>Drosophila melanogaster</i> gene IDGene annotation and protein sequencesSusceptible_gene_annotation.gff3: Gene annotation in susceptible strain using BRAKER3Resistant_gene_annotation.gff3: Gene annotation in resistant strain using BRAKER3Resistant_gene_annotation_liftoff.gff3: Gene annotation in resistant strain after LiftoffSusceptible_pep.fa.gz: Protein sequences extracted from Susceptible_gene_annotation.gff3Resistant_pep.fa.gz: Protein sequences extracted from Resistant_gene_annotation.gff3Resistant_pep_liftoff.fa.gz: Protein sequences extracted from Resistant_gene_annotation_liftoff.gff3<br>
DOI: 10.6084/m9.figshare.5125321.v1
title: Supplementary Material for: Smooth Muscle Contractile Plasticity in Rat Mesenteric Small Arteries: Sensitivity to Specific Vasoconstrictors, Distension and Inflammatory Cytokines

description: Small artery remodeling may involve a shift in the diameter-dependent force generating capacity of smooth muscle cells (SMC). We tested to what extent and under which conditions such contractile plasticity occurs. Rat mesenteric arteries were mounted on isometric myographs. Active diameter-tension relations were determined after application of several stimuli for 16 or 40 h at 40 or 110% of the passive diameter at 100 mm Hg. At 40%, 16-hour incubation with endothelin-1 (ET-1) but not U46619 shifted force capacity towards smaller diameters. Inflammatory cytokines (TNF-α, IL-1β, IFN-γ), TGF-β or serum neither induced such shift nor augmented the effect of ET-1. The ET-1-mediated change was not affected by superoxide dismutase and catalase. Inward matrix remodeling in the presence of ET-1 was slower, occurring after 40 h. Arteries maintained at 110% showed a shift of force capacity to larger diameters, which was prevented by ET-1 but not by U46619. In the active but not the passive state, SMC had altered nuclear lengths after incubation at 40%. These data demonstrate contractile plasticity in small arteries, where chronic strain is an outward drive and specifically ET-1 an inward drive, acting through mechanisms that do not seem to relate to oxidative stress, inflammatory pathways or major reorganization of the SMC.
DOI: 10.6084/m9.figshare.6167726.v5
title: Mandibular CT Dataset Collection

description: Mandibular CT Datasets. Please use the following citations if you use them in your work:<br><br>J. Wallner, J. Egger. Mandibular CT Dataset Collection. Figshare, 2018<br><br>and<br><br>J. Wallner, K. Hochegger, X. Chen, I. Mischak, K. Reinbacher, M. Pau, T. Zrnc, K. Schwenzer-Zimmerer, W. Zemann, D. Schmalstieg, J. Egger. Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action. PLOS One, 2018.<br>Usage notes:<br>The data files attached with this manuscript can be opened in ImageJ with good results and can be displayed at full quality. The files can also be opened in Irfanview, but then the data do not display at full quality.<br><br>