cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5524/101050
title: Genomic data of Nissolia schottii

description: The genus Nissolia contains 13 species. Nissolia is closely related to Chaetocalyx, which also contains 13 species; Together, these two genera appear to represent a unique loss of nodulation within the dalbergioid clade of the legumes. Nissolia schottii is native to México and the southwestern United States. Unlike most legumes, it is a climbing liana. It was also known as belonging to the only clade that lost nodulation in the Papilionoidae legumes. DNA was collected from young leaves,a one-year old plant, and frozen in liquid nitrogen. We sequenced the genome to a depth of approximately 305X. 
The assembled scaffolds of high quality sequences total 466MB, with the contig and scaffold N50 values of 20kb and 179kb respectively. We identified 36,369 protein-coding genes with a mean length of 1.211kb.
DOI: 10.5524/101051
title: Genomic data of Casuarina glauca

description: Casuarina glauca(C. glauca) Frankia sp. strain CcI33 was used to nodulate C. glauca. CcI3 were cultivated in liquid BAP medium4, modified and supplemented with sodium propionate (1 M) and NH4Cl (1 M) as carbon and nitrogen sources, respectively. DNA was collected from young leaves sampled on one month old seedlings using a CTAB based method.We sequenced the genome to a depth of approximately 887X. 
The assembled scaffolds of high quality sequences total 280MB, with the contig and scaffold N50 values of 41kb and 912kb respectively. We identified 26,282 protein-coding genes with a mean length of 1.317kb.
DOI: 10.5524/101052
title: Chromosome-level genome assembly of Calamus simplicifolius

description: <i>Calamus simplicifolius</i> is a spiny, evergreen, climbing palm, usually forming an open cluster of vigorous, unbranched stems that can reach a length of 50 metres and about 12 - 15mm in diameter. This species produces cane of medium diameter, supreme for all types of binding and weaving in the furniture industry and widely used in China for cordage, house construction and the finest basketware. <br> The lack of reference genome sequences is a major obstacle for basic and applied biology on rattan. Here we provide the chromosome-level genome assembly of <i>C. simplicifolius</i> using the Illumina, PacBio, and Hi-C sequencing data. A total of ~730 Gb of raw data covering the predicted genome length ~1.98 Gb to ~ 372× read depth. The de novo genome assembly of ~1.94 Gb generated a scaffold N50 of ~160 Mb with 51,235 intact predicted protein-coding gene models. BUSCO evaluation demonstrated that the genome completeness reached 96.4%. <br>These essential data will not only provide a fundamental resource of functional genomics particularly in promoting germplasm utilization for breeding improved rattan material property, but also will serve as a reference genome for performing comparative studies between and among different species.
DOI: 10.5524/101054
title: Genomic data of the Apple-Ring Acacia (<i>Faidherbia albida</i>)

description: Faidherbia albida is an agriculturally, biologically, medicinally and economically important African orphan crop. It is a thorny tree growing up 630 m (2098 ft) tall and 2 m (6.6 ft) in trunk diameter. Its deep-penetrating tap root makes it highly resistant to drought. The bark is grey, and fissured when old. There are 11,000 seeds/kg. Wikipedia includes in its list of uses; flowers are important in raising bees; seed pods important for raising livestock and as food sources for camel, elephant, antelope, buffalo, baboons and others; Ashes of the wood are used in making soap and as a depilatory and tanning agent for hides; Wood is used for canoes, mortars, and pestles, and carving; the thorny branches useful for a natural barbed fence.
<br>Here we present draft genome information of <em>Faidherbia albida.</em> The assembled genome of <em>Faidherbia albida</em> is 654 Mb, and we predict 28979 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.
DOI: 10.5524/101065
title: Genomic data of Nanmaohu Park Rutaceae plant specimen, RL0002

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001914. Preliminary identification is that it is of the family Rutaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 826374000bp. We have generated 70640000000bp of data, which gives a theoretical coverage of 85.5x.
DOI: 10.5524/101066
title: Genomic data of Nanmaohu Park Solanaceae plant specimen, RL0003

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001967. Preliminary identification is that it is of the family Solanaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 5534290000bp. We have generated 66660000000bp of data, which gives a theoretical coverage of 12x.
DOI: 10.5524/101067
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0004

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001915. Preliminary identification is that it is of the family Rutaceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 281368000bp. We have generated 70160000000bp of data, which gives a theoretical coverage of 249.4x.
DOI: 10.5524/101069
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0006

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001968. Preliminary identification is that it is of the family Cordyline fruticosa. <br>The K-mer distribution of the sequencing predicted the genome size to be 1207040000bp. We have generated 71920000000bp of data, which gives a theoretical coverage of 59.6x.
DOI: 10.5524/101070
title: Image data of Nanmaohu Park vascular plant specimen, RL0007

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101071
title: Genomic data of Nanmaohu Park Lauraceae plant specimen, RL0008

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00002337. Preliminary identification is that it is of the family Lauraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 2624380000bp. We have generated 62620000000bp of data, which gives a theoretical coverage of 23.9x.
DOI: 10.5524/101075
title: Genomic data of Nanmaohu Park vascular plant specimen, RL0012

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains genomic data and images from the plant vouchered as HCNGB:RUILI:HCNGB_00001752. Preliminary identification is that it is of the family Moraceae. <br>The K-mer distribution of the sequencing predicted the genome size to be 636790000bp. We have generated 69580000000bp of data, which gives a theoretical coverage of 109.3x.
DOI: 10.5524/101077
title: Image data of Nanmaohu Park Duabanga grandiflora plant specimen, RL0014

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as HCNGB:RUILI:HCNGB_00001970. Preliminary identification is that of a Duabanga grandiflora plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101079
title: Image data of Nanmaohu Park vascular plant specimen, RL0016

description: We sampled vascular plants from Ruili Botanical Garden,Yunnan, China. All the samples were collected within the geographical region Longitude 97.646389 to 98.099167, Latitude 23.878333 to 24.155556, altitudes ranging from 740 meters to 1,200 meters above sea level. In total, we collected 1,093 vascular plants, from which we used the young leaves for sequencing, and at the same time the specimens were vouchered. The specimens are maintained at the Herbarium of China National GeneBank (HCNGB).<br>Of these, 761 specimens yielded DNA suitable for sequencing. The other 332 samples are vouchered and images of those plants are available in those datasets. The 761 samples represented 689 vascular plant species from 137 families belonging to 49 different orders.<br>There is an ongoing effort to formally identify all specimens, but at time of publication only a very small number had been identified beyond family level. <br>This dataset contains images from the plant vouchered as not provided. Preliminary identification is that it is of the family uncharacterized vascular plant. <br>Unforuntaly insufficient DNA was extracted from the sample to make suquencing possible at this time.
DOI: 10.5524/101044
title: Genomic data of Cercis canadensis

description: The genus Cercis contains just 12 species and belongs to one of the earliest-branching clades of the Fabaceae. Cercis canadensis(C. Canadensis) is native to eastern North American, but is commonly used as an ornamental tree outside its native range, with many horticultural varieties now available. Cercis canadensis (and other members of Cercis) produce flowers on their trunks (cauliflory); these flowers are sometimes eaten fresh or pickled. DNA was collected from leaves of 2-month-old plants grown in a growth chamber. We sequenced the genome to a depth of approximately 1113X. 
The assembled scaffolds of high quality sequences total 330MB, with the contig and scaffold N50 values of 12kb and 421kb respectively. We identified 34,023 protein-coding genes with a mean length of 1.246kb.
DOI: 10.5524/101048
title: Genomic data of Discaria trinervis

description: Discaria trinervis (D. trinervis) is a nodulating species belonging to the Rosales order. It is nodulated by Frankia bacteria, native from South America, found from 31º to 48º S. DNA was collected from leaves of 2 to 4-month-old plants grown in a greenhouse. We sequenced the genome to a depth of approximately 294X. 
The assembled scaffolds of high quality sequences total 310MB, with the contig and scaffold N50 values of 27kb and 115kb respectively. We identified 32,886 protein-coding genes with a mean length of 1.206kb.
DOI: 10.5524/101055
title: Genomic data of the Bambara Groundnut (<i>Vigna subterranea</i>)

description: <i>Vigna subterranea</i> is an agriculturally, biologically, medicinally and economically important African orphan crop. Bambara Groundnut grows well any where groundnut (peanut) grows and so is vastly present from Kwara state and throughout the northern parts of Nigeria.<br>
Wikipedia states that the Bambara groundnut represents the third most important grain legume in semi-arid Africa. It is resistant to high temperature and is suitable for marginal soils where other leguminous crops cannot be grown. Wikipedia includes in its list of uses; the seeds are used for food and beverages; the entire plant is known for soil improvement; in West Africa, the nuts are eaten as a snack, roasted and salted, processed into cake, or as a meal, boiled similar to other beans.<br>
Here we present draft genome information of <em>Vigna subterranea.</em> The assembled genome of <em>Vigna subterranea</em> is 535 Mb, and we predict 31707 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.
DOI: 10.5524/101056
title: Genomic data of the Hyacinth Bean (<i>Lablab purpureus</i>)

description: <i>Lablab purpureus</i> is an agriculturally, biologically, medicinally and economically important African orphan crop. 
Wikipedia states <i>L. purpureus</i> is variable due to extensive breeding in cultivation, but in general they are annual or short-lived perennial vines. The fruit is a legume pod variable in shape, size, and colour. It is usually several cm long and bright purple to pale green and contains up to four seeds. The seeds are white, brown, red, or black depending on the cultivar, sometimes with a white hilum. Wild plants have mottled seeds. The seed is about a cm long.<br>
Wikipedia includes in its list of uses; the fruit and beans are edible if boiled well with several changes of the water; the leaves are eaten raw or cooked like spinach; the flowers can be eaten raw or steamed; the root can be boiled or baked for food and the seeds are used to make tofu and tempeh. <br>
In Kenya, the bean is though to encourage lactation and has historically been the main dish for breastfeeding mothers.
Here we present draft genome information of <em>Lablab purpureus.</em> The assembled genome of <em>Lablab purpureus</em> is 395 Mb, and we predict 20946 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.
DOI: 10.5524/101057
title: Genomic data of Marula (<i>Sclerocarya birrea</i>)

description: <i>Sclerocarya birrea</i> is an agriculturally, biologically, medicinally and economically important African orphan crop. <br>
The tree is a single stemmed tree with a wide spreading crown. It is characterised by a grey mottled bark. The tree grows up to 18m tall mostly in low altitudes and open woodlands. The fruits, which ripen between December and March, have a light yellow skin, with white flesh that is rich in vitamin C.<br>
Wikipedia includes in its list of uses; the fruit is used for food in Africa; the tree produces a high quality cooking oil; on an industrial level the fruit is processed where pulp, pips, kernels and kernal oil are extracted and stored for processing. The fruit is also used to make the cream liqueur Amarula, and the oil used in cosmetics. <br>
Here we present draft genome information of <em>Sclerocarya birrea.</em> The assembled genome of <em>Sclerocarya birrea</em> is 331 Mb, and we predict 18937 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.
DOI: 10.5524/101058
title: Genomic data of the Horseradish Tree (<i>Moringa oleifera</i>)

description: <i>Moringa oleifera</i> is an agriculturally, biologically, medicinally and economically important African orphan crop. 
Wikipediastates <i>M. oleifera</i> is a fast-growing, drought-resistant tree, native to the southern foothills of the Western Ghats in southwestern India, and widely cultivated in tropical and subtropical areas where its young seed pods and leaves are used as vegetables, and many parts of the tree are used in traditional herbal medicine. It can also be used for water purification and hand washing.<br>
Moringa trees have been used to combat malnutrition, especially among infants and nursing mothers.Moringa has numerous applications in cooking throughout its regional distribution. The fruits or seed pods, known as drumsticks, are a culinary vegetable commonly used in soups and curries. The leaves are also commonly eaten with many culinary uses, and the flowers are featured in some recipes as well.<br>
Here we present draft genome information of <em>Moringa oleifera.</em> The assembled genome of <em>Moringa oleifera</em> is 217 Mb, and we predict 18451 protein-coding genes for this crop species. We have further analyzed the expansion and contraction of selected gene families, and characterized root-nodule-symbiosis genes, transcription factors and starch biosynthesis related genes in the genome of this species.
DOI: 10.5524/101028
title: Genomic data of the Cuckoo roller (<em>Leptosomus discolor</em>).

description: The Cuckoo Roller (<em>Leptosomus discolor discolor </em>(Hermann, 1783)) is the sole bird of the order Leptosomiformes within the superorder Coraciimorphae - that includes kingfishers, rollers and bee-eaters. It is a medium-large bird that inhabits forests and woodlands in Madagascar and the Comoro Islands. <br>
These data have been produced as part of the Avian Phylogenomics Project. DNA was collected from a female at Weltvogelpark, in Walsrode, Germany, of a male tended to by Andreas Frei of the Zoo. We sequenced the genome to a depth of approximately 32X. <br>
The assembled scaffolds of high quality sequences total 1.15Gb, with the contig and scaffold N50 values of 19kb and 61kb respectively. We identified 14,831 protein-coding genes with a mean length of 13.9kb.
<br>