cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7770716
title: From the Libyan border to the Nile – Neoproterozoic magmatism and basement evolution of southern Egypt

description: In southern Egypt, Neoproterozoic granitoids intrude the crust from Libya in the west to the Nile River in the east. Best exposed at Gebel Uweinat, Gebel Kamil, Bir Safsaf, Gebel El Asr and Gebel Umm Shaghir, these rocks represent the transition between the rejuvenated Archean to Paleoproterozoic crust of the east Saharan craton and the juvenile Neoproterozoic crust of the Arabian–Nubian Shield to the east. We present U-Pb zircon geochronology and whole rock geochemistry from 16 Neoproterozoic (c. 628–580 Ma) granitoids across southern Egypt which document the synchronous production of diverse compositions indicative of an intraplate or intracontinental tectonic setting. Our data better constrain the age relationships, petrogenesis, and Pan-African crustal growth associated with the amalgamation of Gondwana and contribute to understanding the crust-modifying processes that led to the development of the Saharan metacraton in the Ediacaran.
DOI: 10.6084/m9.figshare.7770716.v1
title: From the Libyan border to the Nile – Neoproterozoic magmatism and basement evolution of southern Egypt

description: In southern Egypt, Neoproterozoic granitoids intrude the crust from Libya in the west to the Nile River in the east. Best exposed at Gebel Uweinat, Gebel Kamil, Bir Safsaf, Gebel El Asr and Gebel Umm Shaghir, these rocks represent the transition between the rejuvenated Archean to Paleoproterozoic crust of the east Saharan craton and the juvenile Neoproterozoic crust of the Arabian–Nubian Shield to the east. We present U-Pb zircon geochronology and whole rock geochemistry from 16 Neoproterozoic (c. 628–580 Ma) granitoids across southern Egypt which document the synchronous production of diverse compositions indicative of an intraplate or intracontinental tectonic setting. Our data better constrain the age relationships, petrogenesis, and Pan-African crustal growth associated with the amalgamation of Gondwana and contribute to understanding the crust-modifying processes that led to the development of the Saharan metacraton in the Ediacaran.
DOI: 10.5281/zenodo.10548612
title: Solar and Wind Parks Generation Datasets with hour resolution aggregated per district in Peloponnese region

description: Those measured data from the TSO side involve historic measured production data for wind and solar parks for the last 2 and 6 years, respectively. The data are given in the following format <Date> ; <Production per district> and involve the following.

Historic measured production data for wind and solar for each of the concerned plants: hourly production for the last 2 and 6 years, respectively.

Hourly production data in MW for the aggregate of the wind parks in each district of Peloponnese in a two-year period (1-1-2018, 1-1-2020) are provided in the “wp_data_aggr.xlsx” file, and particularly in “wp_production_18+19” Sheet. 

Hourly production data In MW for the aggregate of the solar parks in each district of Peloponnese in a six-year period (1-1-2015, 1-2-2021) are provided in the “pv_data_aggr.xlsx” file, and particularly in “PV_PROD” Sheet.
DOI: 10.5281/zenodo.10548613
title: Solar and Wind Parks Generation Datasets with hour resolution aggregated per district in Peloponnese region

description: 1   WP8 aimed at the development and implementation of a web based app that enhances Active Power Management necessary for coordination of a TSOs and DSOs, using AI methods and cloud calculation engines that was tested in Peloponnese and Crete regions. Full description of the scope and results of WP8 Greek demo can be found in the relative deliverable D8.2: Development and implementation of the “F-Channel” platform (https://www.onenet-project.eu//wp-content/uploads/2023/10/OneNet_D8.2_V1.0.pdf). For purpose of this project similar, historical weather data in 1 hour resolution have been used in order to obtain behavior patterns of climatic parameters (daily, monthly, season) throughout region of interest. For this purpose various ERA5 climatic datasets has been used and AI algorithms applied in combination with terrain orography data. Modeled results was compared with operational data from TSO/DSO and appropriate model calibration has been provided based on deep learning AI algorithms. Those measured data from the TSO side processed by the developers and energy policy experts during the activities planned under WP8  of OneNet project involve historic measured production data for wind and solar parks for the last 2 and 6 years, respectively. The data are given in the following format <Date> ; <Production per district> and involve the following.

Historic measured production data for wind and solar for each of the concerned plants: hourly production for the last 2 and 6 years, respectively.

Hourly production data in MW for the aggregate of the wind parks in each district of Peloponnese in a two-year period (1-1-2018, 1-1-2020) are provided in the “wp_data_aggr.xlsx” file, and particularly in “wp_production_18+19” Sheet. 

Hourly production data In MW for the aggregate of the solar parks in each district of Peloponnese in a six-year period (1-1-2015, 1-2-2021) are provided in the “pv_data_aggr.xlsx” file, and particularly in “PV_PROD” Sheet.
DOI: 10.5281/zenodo.10708825
title: Solar and Wind Parks Generation Datasets with hour resolution aggregated per district in Peloponnese region

description: Those measured data from the TSO side involve historic measured production data for wind and solar parks for the last 2 and 6 years, respectively. The data are given in the following format <Date> ; <Production per district> and involve the following.

Historic measured production data for wind and solar for each of the concerned plants: hourly production for the last 2 and 6 years, respectively.

Hourly production data in MW for the aggregate of the wind parks in each district of Peloponnese in a two-year period (1-1-2018, 1-1-2020) are provided in the “wp_data_aggr.xlsx” file, and particularly in “wp_production_18+19” Sheet. 

Hourly production data In MW for the aggregate of the solar parks in each district of Peloponnese in a six-year period (1-1-2015, 1-2-2021) are provided in the “pv_data_aggr.xlsx” file, and particularly in “PV_PROD” Sheet.
DOI: 10.6084/m9.figshare.6722180
title: Additional file 12: of Transferring knowledge of bacterial protein interaction networks to predict pathogen targeted human genes and immune signaling pathways: a case study on M. tuberculosis

description: Text file contains the M. tuberculosis H37Rv genes that target human cancer/immune signaling pathways. (TXT 21 kb)
DOI: 10.6084/m9.figshare.6722180.v1
title: Additional file 12: of Transferring knowledge of bacterial protein interaction networks to predict pathogen targeted human genes and immune signaling pathways: a case study on M. tuberculosis

description: Text file contains the M. tuberculosis H37Rv genes that target human cancer/immune signaling pathways. (TXT 21 kb)
DOI: 10.5281/zenodo.10687565
title: Data and R scripts used for the article "Genotyping-by-Sequencing and Morphology Revealed the Role of Polyploidization and Hybridization in the Diversification of the Centaurea aspera L. Complex of Section Seridia (Juss.) DC. (Asteraceae)"

description: This are the data and R scripts used for the article "Genotyping-by-Sequencing and Morphology Revealed the Role of Polyploidization and Hybridization in the Diversification of the Centaurea aspera L. Complex of Section Seridia (Juss.) DC. (Asteraceae)" DOI: https://doi.org/10.3390/plants11151919.

In the Western Mediterranean section, Seridia studies are scarce. In this section, Centaurea aspera forms a complex including four European diploid and one Moroccan autotetraploid subspecies, an allopolyploid, and hybrids among them. Here, we aimed to delimit the different taxa, identify any introgressions, and discuss their evolutionary history. Samples of all taxa were analysed using 1688 SNPs obtained through GBS and were morphologically characterized. Three genetically well-differentiated clusters were observed, corresponding to the allopolyploid C. seridis, the diploid C. aspera and the cryptic autotetraploid C. aspera ssp. gentilii, which is proposed to be considered as a species. Centaurea seridis showed a high isolation by distance, a greater morphological variability, and a lack of interspecific gene flow. Diploid and autotetraploid C. aspera individuals were morphologically similar, and some introgressions were detected in Southern Spain, where new forms may promote diversification. This gene flow might have taken place during the Messinian and before autopolyploidization occurred in Morocco. In the C. aspera complex, current interspecific barriers are strong, while polyploidization may provide a better adaptation to drier environments.
DOI: 10.5281/zenodo.10707767
title: Data and R scripts for the article "Lichen Biodiversity and Near-Infrared Metabolomic Fingerprint as Diagnostic and Prognostic Complementary Tools for Biomonitoring: A Case Study in the Eastern Iberian Peninsula"

description: This are the data and R scripts used for the article "Lichen Biodiversity and Near-Infrared Metabolomic Fingerprint as Diagnostic and Prognostic Complementary Tools for Biomonitoring: A Case Study in the Eastern Iberian Peninsula". DOI:  https://doi.org/10.3390/jof9111064.

In the 1990s, a sampling network for the biomonitoring of forests using epiphytic lichen diversity was established in the eastern Iberian Peninsula. This area registered air pollution impacts by winds from the Andorra thermal power plant, as well as from photo-oxidants and nitrogen depositions from local and long-distance transport. In 1997, an assessment of the state of lichen communities was carried out by calculating the Index of Atmospheric Purity. In addition, visible symptoms of morphological injury were recorded in nine macrolichens pre-selected by the speed of symptom evolution and their wide distribution in the territory. The thermal power plant has been closed and inactive since 2020. During 2022, almost 25 years later, seven stations of this previously established biomonitoring were revaluated. To compare the results obtained in 1997 and 2022, the same methodology was used, and data from air quality stations were included. We tested if, by integrating innovative methodologies (NIRS) into biomonitoring tools, it is possible to render an integrated response. The results displayed a general decrease in biodiversity in several of the sampling plots and a generalised increase in damage symptoms in the target lichen species studied in 1997, which seem to be the consequence of a multifactorial response.
DOI: 10.5281/zenodo.10707768
title: Data and R scripts for the article "Lichen Biodiversity and Near-Infrared Metabolomic Fingerprint as Diagnostic and Prognostic Complementary Tools for Biomonitoring: A Case Study in the Eastern Iberian Peninsula"

description: This are the data and R scripts used for the article "Lichen Biodiversity and Near-Infrared Metabolomic Fingerprint as Diagnostic and Prognostic Complementary Tools for Biomonitoring: A Case Study in the Eastern Iberian Peninsula". DOI:  https://doi.org/10.3390/jof9111064.

In the 1990s, a sampling network for the biomonitoring of forests using epiphytic lichen diversity was established in the eastern Iberian Peninsula. This area registered air pollution impacts by winds from the Andorra thermal power plant, as well as from photo-oxidants and nitrogen depositions from local and long-distance transport. In 1997, an assessment of the state of lichen communities was carried out by calculating the Index of Atmospheric Purity. In addition, visible symptoms of morphological injury were recorded in nine macrolichens pre-selected by the speed of symptom evolution and their wide distribution in the territory. The thermal power plant has been closed and inactive since 2020. During 2022, almost 25 years later, seven stations of this previously established biomonitoring were revaluated. To compare the results obtained in 1997 and 2022, the same methodology was used, and data from air quality stations were included. We tested if, by integrating innovative methodologies (NIRS) into biomonitoring tools, it is possible to render an integrated response. The results displayed a general decrease in biodiversity in several of the sampling plots and a generalised increase in damage symptoms in the target lichen species studied in 1997, which seem to be the consequence of a multifactorial response.
DOI: 10.5281/zenodo.10708774
title: Data and code for "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass"

description: This repository provides the data and code for the paper "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass". Almost all data required to produce the figures in this study are provided. However, not all raw data are provided, because of too large file sizes. For more information, please contact natacha.legrix@unibe.ch

In Version 2, an error has been corrected in the computation of the grid cell area, which significantly affected values in Fig. A1.
DOI: 10.5281/zenodo.8345263
title: Data and code for "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass"

description: This repository provides the data and code for the paper "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass". Almost all data required to produce the figures in this study are provided. However, not all raw data are provided, because of too large file sizes. For more information, please contact natacha.legrix@unibe.ch

In Version 2, an error has been corrected in the computation of the grid cell area, which significantly affected values in Fig. A1.
DOI: 10.5281/zenodo.8345264
title: Data and code for "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass"

description: This repository provides the data and code for the paper "Extreme and compound ocean events are key drivers of projected low pelagic fish biomass". Almost all data required to produce the figures in this study are provided. However, not all raw data are provided, because of too large file sizes. For more information, please contact natacha.legrix@unibe.ch
DOI: 10.25345/c5pv6bj4v
title: MassIVE MSV000094168 - Tight regulation of a nuclear HAPSTR1-HUWE1 pathway essential for mammalian life
title: Authors: David R. Amici, Sammy Alhayek, Austin T. Klein, Yi-Zhi Wang, Anika P. Wilen, Weimin Song, Pei Zhu, Abhishek Thakkar, McKenzi A. King, Adam Steffeck, Milad J. Alasady, Clara Peek, Jeffrey N. Savas, Marc L. Mendillo* ABSTRACT The recently discovered HAPSTR1 protein broadly oversees cellular stress responses. This function requires HUWE1, a ubiquitin ligase which paradoxically marks HAPSTR1 for degradation, but much about this pathway remains unclear. Here, leveraging multiplexed proteomics, we find that HAPSTR1 enables nuclear localization of HUWE1 with implications for nuclear protein quality control. We show that HAPSTR1 is tightly regulated and identify ubiquitin ligase TRIP12 and deubiquitinase USP7 as upstream regulators titrating HAPSTR1 stability. Finally, we generate conditional Hapstr1 knockout mice, finding that Hapstr1-null mice are perinatal lethal, adult mice depleted of Hapstr1 have reduced fitness, and primary cells explanted from Hapstr1-null animals falter in culture coincident with HUWE1 mislocalization and broadly remodeled signaling. Notably, while HAPSTR1 potently suppresses p53, we find that Hapstr1 is essential for life even in mice lacking p53. Altogether, we identify novel components and functional insights into the conserved HAPSTR1-HUWE1 pathway and demonstrate its requirement for mammalian life.
DOI: 10.6084/m9.figshare.25187674
title: Post-traumatic amnesia: a scoping review & content analysis of behavioral disturbances

description: The aim of this scoping review was to identify behavioral disturbances exhibited by patients in post-traumatic amnesia (PTA). While behavioral disturbances are common in PTA, research into their presentation and standardized measures for their assessment are limited. The study protocol was registered with PROSPERO (CRD42021268275). A scoping review of databases was performed according to pre-determined criteria on 29 July 2021 and updated on 13 July 2022. A conventional content analysis was used to examine and categorize behavioral disturbances. Thirty papers met the inclusion criteria, of which 27 reported observations and/or scores obtained on behavioral scales, and 3 on clinician interviews and surveys. None focused exclusively on children. Agitation was the most frequently assessed behavior, and Agitated Behavior Scale was the most used instrument. Content analysis, however, bore eight broad behavioral categories: disinhibition, agitation, aggression, lability, lethargy/low mood, perceptual disturbances/psychotic symptoms, personality change and sleep disturbances. Our study revealed that while standardized assessments of behavior of patients in PTA are often limited to agitation, clinical descriptions include a range of behavioral disturbances. Our study highlights a significant gap in the systematic assessment of a wide range of behavioral disturbances observed in PTA.
DOI: 10.6084/m9.figshare.25187674.v1
title: Post-traumatic amnesia: a scoping review & content analysis of behavioral disturbances

description: The aim of this scoping review was to identify behavioral disturbances exhibited by patients in post-traumatic amnesia (PTA). While behavioral disturbances are common in PTA, research into their presentation and standardized measures for their assessment are limited. The study protocol was registered with PROSPERO (CRD42021268275). A scoping review of databases was performed according to pre-determined criteria on 29 July 2021 and updated on 13 July 2022. A conventional content analysis was used to examine and categorize behavioral disturbances. Thirty papers met the inclusion criteria, of which 27 reported observations and/or scores obtained on behavioral scales, and 3 on clinician interviews and surveys. None focused exclusively on children. Agitation was the most frequently assessed behavior, and Agitated Behavior Scale was the most used instrument. Content analysis, however, bore eight broad behavioral categories: disinhibition, agitation, aggression, lability, lethargy/low mood, perceptual disturbances/psychotic symptoms, personality change and sleep disturbances. Our study revealed that while standardized assessments of behavior of patients in PTA are often limited to agitation, clinical descriptions include a range of behavioral disturbances. Our study highlights a significant gap in the systematic assessment of a wide range of behavioral disturbances observed in PTA.
DOI: 10.6084/m9.figshare.25040999
title: Testing for Equivalence of Pre-Trends in Difference-in-Differences Estimation

description: The plausibility of the “parallel trends assumption” in Difference-in-Differences estimation is usually assessed by a test of the null hypothesis that the difference between the average outcomes of both groups is constant over time before the treatment. However, failure to reject the null hypothesis does not imply the absence of differences in time trends between both groups. We provide equivalence tests that allow researchers to find evidence in favor of the parallel trends assumption and thus increase the credibility of their treatment effect estimates. While we motivate our tests in the standard two-way fixed effects model, we discuss simple extensions to settings in which treatment adoption is staggered over time.
DOI: 10.6084/m9.figshare.25054595
title: Identification and Auto-Debiased Machine Learning for Outcome-Conditioned Average Structural Derivatives

description: This study proposes a new class of heterogeneous causal quantities, referred to as <i>outcome-conditioned</i> average structural derivatives (OASDs), in a general nonseparable model. An OASD is the average partial effect of a marginal change in a continuous treatment on individuals located on different parts of an outcome distribution, irrespective of individuals’ characteristics. We show that OASDs extend the unconditional quantile partial effects (UQPE) proposed by Firpo, Fortin, and Lemieux to that conditional on a set of outcome values by effectively integrating the UQPE. Exploiting such relationship brings about two merits. First, unlike UQPE that is generally not n-estimable, OASD is shown to be n-estimable. Second, our estimator achieves semiparametric efficiency bound which is a new result in the literature. We propose a novel, automatic, debiased machine-learning estimator for an OASD, and present asymptotic statistical guarantees for it. The estimator is proven to be n-consistent, asymptotically normal, and semi-parametrically efficient. We also prove the validity of the bootstrap procedure for uniform inference for the OASD process. We apply the method to Imbens, Rubin, and Sacerdote’s lottery data.
DOI: 10.6084/m9.figshare.25040999.v1
title: Testing for equivalence of pre-trends in Difference-in-Differences estimation

description: Abstract–<b>The plausibility of the “parallel trends assumption” in Difference-in-Differences estimation is usually assessed by a test of the null hypothesis that the difference between the average outcomes of both groups is constant over time before the treatment. However, failure to reject the null hypothesis does not imply the absence of differences in time trends between both groups. We provide equivalence tests that allow researchers to find evidence in favor of the parallel trends assumption and thus increase the credibility of their treatment effect estimates. While we motivate our tests in the standard two-way fixed effects model, we discuss simple extensions to settings in which treatment adoption is staggered over time.</b>
DOI: 10.6084/m9.figshare.25040999.v2
title: Testing for Equivalence of Pre-Trends in Difference-in-Differences Estimation

description: The plausibility of the “parallel trends assumption” in Difference-in-Differences estimation is usually assessed by a test of the null hypothesis that the difference between the average outcomes of both groups is constant over time before the treatment. However, failure to reject the null hypothesis does not imply the absence of differences in time trends between both groups. We provide equivalence tests that allow researchers to find evidence in favor of the parallel trends assumption and thus increase the credibility of their treatment effect estimates. While we motivate our tests in the standard two-way fixed effects model, we discuss simple extensions to settings in which treatment adoption is staggered over time.