cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/295
title: Sudden relaminarisation and lifetimes in forced isotropic turbulence

description: We demonstrate an unexpected connection between isotropic turbulence and wall-bounded shear flows. We perform direct numerical simulations of isotropic turbulence forced at large scales at moderate Reynolds numbers and observe sudden transitions from chaotic dynamics to a spatially simple flow, analogous to the laminar state in wall bounded shear flows. We find that the survival probabilities of turbulence are exponential and the typical lifetimes increase super-exponentially with the Reynolds number. Our results suggest that both isotropic turbulence and wall-bounded shear flows qualitatively share the same phase-space dynamics.
description: For a description of the data please see the README file.
DOI: 10.7488/ds/62
title: ATSR Reprocessing for Climate: Sea Surface Temperature (ARC-SST) v1.1 - Global 1 Degree Monthly Average - Obs4MIPs

description: This dataset contains observations of Sea Surface Temperature (SST) from the series of (Advanced) Along-Track Scanning Radiometers ((A)ATSRs). SSTs are provided as monthly averages on a 1 degree longitude/latitude global grid and cover the period from 1st January 1997 to 31st December 2011. Equivalent data for Sea Surface Temperature Anomaly (SSTA), relative to climatology, are also available. The dataset is derived from the data products of the ATSR Reprocessing for Climate: Sea Surface Temperature (ARC-SST_ project (Merchant et al, 2012). These are daily SST estimates on a 0.1 degree longitude/latitude grid and the methods used to derive the monthly 1 degree dataset are described in the accompanying technical note (tosTechNote_ATSR_L3_ARC-v1.1.1_199701_201112.pdf). The ARC-SST source data from which this dataset is derived is available at: http://badc.nerc.ac.uk/view/neodc.nerc.ac.uk__ATOM__DE_3abf8c96-a7d6-11e0-9cb8-00e081470265 Reference: Merchant, C. J., O. Embury, N. A. Rayner, D. I. Berry, G. Corlett, K. Lean, K. L. Veal, E. C. Kent, D. Llewellyn-Jones, J. J. Remedios, and R. Saunders (2012), A twenty-year independent record of sea surface temperature for climate from Along Track Scanning Radiometers, J. Geophys. Res., 117, C12013, doi:10.1029/2012JC008400.
description: Data: tos_ATSR_L3_ARC-v1.1.1_199701_201112.nc and tosAnom_ATSR_L3_ARC-v1.1.1_199701_201112.nc. Documentation: tosTechNote_ATSR_L3_ARC-v1.1.1_199701_201112.pdf.
DOI: 10.7488/ds/213
title: Speaker_input_variability_raw_data

description: Supporting data for Atkinson, Kirby, and Smith (in preparation). Speaker input variability does not explain why larger populations have simpler languages: raw data for Experiments 1 and 2. Languages spoken by more people appear to be structurally more simple, but it is not clear why this would be the case. This study investigates one possible explanation. It has been proposed that learning in a larger community results in a learner receiving their input from a greater number of speakers. This will increase the variability of the input, and we test the proposal that this in turn may make more complex grammatical features more difficult to transfer from generation to generation.
description: This item contains two comma separated value files (.csv) and a readme text file (.txt). exp_1.csv gives the results from Experiment 1, which investigates the effect of speaker variability on the segmentation of continuous linguistic input; exp_2.csv gives the results from Experiment 2, which investigates the effect of speaker variability on the acquisition of a miniature language.
DOI: 10.7488/ds/2801
title: LIVE-PAINT Supplementary Videos

description: We present LIVE-PAINT, a new approach to super-resolution fluorescent imaging inside live cells. In LIVE-PAINT only a short peptide sequence is fused to the protein being studied, unlike conventional super-resolution methods, which rely on directly fusing the biomolecule of interest to a large fluorescent protein, organic fluorophore, or oligonucleotide. LIVE-PAINT works by observing the blinking of localized fluorescence as this peptide is reversibly bound by a protein that is fused to a fluorescent protein. We have demonstrated the effectiveness of LIVE-PAINT by imaging a number of different proteins inside live S. cerevisiae. Not only is LIVE-PAINT widely applicable, easily implemented, and the modifications minimally perturbing, but we also anticipate it will extended data acquisition times compared to those previously possible with methods that involve direct fusion to a fluorescent protein. Please note, compressed versions of the mp4 files are available at https://doi.org/10.7488/ds/2839 .
description: # FILE LISTING # * "Supplementary Movie 1 - mKO blinking.avi" LIVE-PAINT blinking behavior shown in S. cerevisiae using the fluorescent protein mKO and the reversible interaction pair SYNZIP17-SYNZIP18. Scale bar is 1 micron. * "Supplementary Movie 2 - mOrange blinking.avi" LIVE-PAINT blinking behavior shown in S. cerevisiae using the fluorescent protein mOrange and the reversible interaction pair SYNZIP17-SYNZIP18. Scale bar is 1 micron. * "Supplementary Movie 3 - cofilin tracking.avi" Video tracking cofilin in S. cerevisiae, where cofilin is C-terminally tagged with SYNZIP18 and labeled with separately expressed SYNZIP17-mNeonGreen. Scale bar is 5 microns. * "Supplementary Movie 4 - cofilin tracking.avi" Tracking the diffusion of a single cofilin "spot" in S. cerevisiae, where cofilin is C-terminally tagged with SYNZIP18 and labeled with separately expressed SYNZIP17-mNeonGreen. Scale bar is 1 micron. MP4 versions of each file have also been included, for accessibility.
DOI: 10.7488/ds/1766
title: Rhododendron ponticum in Hatchford Wood, Surrey

description: Data Relating to the location of Rhododedron ponticum within Hatchford Woods, within Ockham Common, Surrey. GIS vector data. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2010-09-14 and migrated to Edinburgh DataShare on 2017-02-21.
description: ESRI Shapefile
DOI: 10.7488/ds/27
title: University of Edinburgh Telephone Survey

description: Between 21 January and 10 February 2013, a survey was conducted regarding the University’s current usage of and future requirements for its telephone system. The survey was aimed at telephone system users, assumed to be almost exclusively University staff. The survey was advertised (with the help of Communications and Marketing) using a single email message to the University’s “all staff” list. This dataset contains the raw survey data and a pdf document that analyses the results and discusses implications for the future of the University’s telephone provision.
description: This dataset consists of a spreadsheet in csv format composed of 32 questions/columns and 1289 anonymised respondent-replies/rows ('AnonymisedData_TelephoneSurvey_ChrisAdie.csv') and a survey report in pdf format created February - March 2013 ('Report_PaperB_TelephoneSurvey_ChrisAdie.pdf').
DOI: 10.7488/ds/153
title: Database of Dedications to Saints in Medieval Scotland
title: Survey of dedications to Saints in Medieval Scotland

description: The Survey of Dedications to Saints in Medieval Scotland is the result of a three-year project funded by a Major Research Grant from the Arts and Humanities Research Council (AHRC). The project is based in the Scottish History subject area of the School of History, Classics and Archaeology at the University of Edinburgh. The project began in October 2004 and the final update of data from the AHRC-funded phase of the project was completed in December 2007. However, the contents of the database will continue to be updated annually (in December) to include material from sources outwith the scope of the original survey.
description: *.csv are the 47 Unicode (Comma separated values) database tables. sql_access.doc outlines the procedure for converting an MS Access database for long-term preservation using SQL Server. schema.sql is the SQL schema for the Saints database. Saints dataElia.mdb is the MS Access Saints database. SaintDedicns_download.pdf is the field description file.
DOI: 10.7488/ds/1448
title: Top-Down Protein Electron Capture Dissociation Mass Spectrometry Datasets

description: Top-down electron capture dissociation (ECD) fragmentation datasets for several widely available commerical protein samples. All data were collected on a 12T SolariX FT-ICR mass spectrometer (Bruker Daltonics); and data is included here as .baf files (Bruker Daltonic Data files). These datasets were using for the analysis of 'Autopiquer - a robust and reliable peak detection algorithm for mass spectrometry'; in collaboration with the Kilgour Research Group (Nottingham Trent University).
DOI: 10.7488/ds/222
title: ARCHER Annual Report 2014
title: ARCHER Annual Report 2014

description: ARCHER National Supercomputing Service Annual Report for 2014 and associated dataset
DOI: 10.7488/ds/159
title: ARC-Lake v1.1 - Per-Lake

description: ARC-Lake v1.1 - Per-Lake contains data products on a lake-by-lake basis. These data products contain observations of Lake Surface Water Temperature (LSWT) and Lake Ice Cover (LIC) from the series of (Advanced) Along-Track Scanning Radiometers ((A)ATSRs). ARC-Lake v1.1 data products cover the period from 1st June 1995 to 31st December 2009. A number of different data products are available for each lake and are grouped together into a zip archive for each lake. A summary of the types of data product available is given on http://datashare.is.ed.ac.uk/handle/10283/88 and full details of the file naming convention and file contents are given in the ARC-Lake Data Product Description document (ARCLake_DPD_v1_1_2.pdf). Individual lake archives are grouped into larger zip archives by continent (with the exception of the Caspian Sea). A full listing of each zip archive is provided in the ARC-Lake Data Product File List (ARCLake_DPFL_v1_1_2.pdf). Details of the methods used and a list of all lakes and their locations are given in the ARC-Lake Algorithm Theoretical Basis Document (ARCLake_ATBD_v_1_1.pdf). Additional information about the ARC-Lake project and some basic data analysis tools can be found on the project website: http://www.geos.ed.ac.uk/arclake . Please cite both this dataset and the related publication: * "MacCallum, Stuart N; Merchant, Christopher J. (2011). ARC-Lake v1.1 - Per-Lake, 1995-2009 [Dataset]. University of Edinburgh. School of GeoSciences / European Space Agency. https://doi.org/10.7488/ds/159." * "MacCallum, S.N. and Merchant, C.J. (2012) Surface water temperature observations of large lakes by optimal estimation. Canadian Journal of Remote Sensing, 38 (1). pp. 25-45. ISSN 1712-7971 doi: 10.5589/m12-010"
description: This dataset contains data products on a lake-by-lake basis. Lakes have been grouped by continents in the following zip archives: ARCLake_africa.zip - data products for lakes in Africa, ARCLake_asia_oceania.zip - data products for lakes in Asia/Oceania, ARCLake_europe.zip - data products for lakes in Europe, ARCLake_great_lakes.zip - data products for the North American Great Lakes, ARCLake_n_america.zip - data products for all other lakes in North America, ARCLake_s_america.zip - data products for lakes in South America. Due to size limitations, data products for the Caspian Sea are stored separately across two zip archives: ALID0001_OBS.zip (observations) and ALID0001_REC.zip (reconstructions). Documentation is provided in the following files: ARCLake_DPFL_v1_1_2.pdf - A full listing of the contents of each of the zip archives. ARCLake_DPD_v1_1_2.pdf - Detailed description of all data products. ARC-Lake-ATBD-v1.0.pdf - Algorithm theoretical basis document (ATBD).
DOI: 10.7488/ds/1805
title: CORONA Satellite Image of Area Extending from Abu Mendil to Abu Safayeh (Jazira), Syria

description: This CORONA panchromatic satellite image covers an area extending from Abu Mendil to Abu Safayeh, Syria. A segment of the River Euphrates is also in the image, and with this image predating the construction of the Euphrates Dam at Tabqa, Syria and the Ataturk Dam to the north in Turkey, this makes the image especially important for identifying archaeological sites situated along the River Euphrates which would have become inundated with the formation of Lake Assad. The ground resolution is approximately 2 metres. This zipped image dataset also includes a screenshot showing a section of the image's footprint, which corresponds to the full extent of the captured images. There are four image segments associated with the full USGS provided footprint (DS1107-2138DA068_68_a.tif, DS1107-2138DA068_68_b.tif, DS1107-2138DA068_68_c.tif and DS1107-2138DA068_68_d.tif). There is no cloud cover associated with these images. Please note that the spatial accuracy is not reliable and may need to be geo-referenced again, though this was done to situate the image over the corresponding ground area. The RMS for this 0.01241. Users of this image will be able to identify areas using built environments and features of the physical landscape. This image was cropped to remove scanned negative border, and then geo-referenced in ArcGIS 9.3 using GoogleEarth to find physical features such as river conjunctions and road junctions. This CORONA satellite image was made available from the U.S. Geological Survey. Aerial or Satellite Imagery. This dataset was first accessioned in the EDINA ShareGeo Open repository on 2011-02-04 and migrated to Edinburgh DataShare on 2017-02-21.
description: GeoTIFF
DOI: 10.7488/ds/118
title: OpenUrl router requests by date

description: The data in this file was based on the OpenURL Router data available from http://openurl.ac.uk/doc/data/data.html. It was developed by EDINA as part of a JISC-funded project, more information on the project is available at http://edina.ac.uk/projects/Using_OpenURL_Activity_data_summary.html
description: OpenUrl router number of requests by date & hour. The data in this file was based on the OpenURL Router data available from http://openurl.ac.uk/doc/data/data.html. It was developed by EDINA as part of a JISC-funded project, more information on the project is available at http://edina.ac.uk/projects/Using_OpenURL_Activity_data_summary.html
DOI: 10.7488/ds/2870
title: Fire spread between two informal settlement dwellings (Test 10)

description: This is Test 10 among the 13 experiments, which is an experiment of double dwellings.
DOI: 10.7488/ds/61
title: Shilluk_TongaDialect_2013_controlled_VerbForms

description: The primary data are audio recordings. They are elicited Shilluk utterances, from 10 speakers, collected through controlled elicitation. The data were collected in order to investigate the phonological contrast between Low vs. Early High Fall vs. Late High Fall vs. High in Shilluk. This dataset forms the basis of Remijsen & Ayoker "Contrastive tonal alignment in falling contours in Shilluk" which has been accepted for publication in Phonology, to be published at the end of 2014.
description: The contents of this item are explained in detail in the readme file. The data types (dataset.zip) are the following: a) sound files in wav format at a sampling frequency of 48 kHz (1808 files); b) segmentations of the wav files, in the Praat-specific TextGrid format (536 files – segmentations are only available for those items included in the papers); c) F0 traces derived from the wav files, in the Praat-specific Pitch format (536 files – only available for those items included in the papers); d) F0 traces, derived from the Pitch objects and corrected for spikes, in the Praat specific PitchTier format (536 files – only available for those items included in the papers). Also included in this item are the elicitation list (ElicitedMaterials.pdf), several files relating to the acoustic analysis (PhonologySubmission_PraatOutput.txt; PhonologySubmission_PraatScript.psc; PhonologySubmission_RCode.txt), and some of the materials through which the results have been disseminated: presentation slides at University of Massachusetts at Amherst (RemijsenAyoker_UMass.pdf) and TAL2014 proceedings paper (RemijsenAyoker_TAL2014.pdf).
DOI: 10.7488/ds/228
title: ARCHER SP Quarterly Report 4Q 2014

description: ARCHER National Supercomputing Service SP Quarterly Report for Q4 2014 and associated dataset
DOI: 10.7488/ds/225
title: ARCHER SP Quarterly Report 1Q 2014

description: ARCHER National Supercomputing Service SP Quarterly Report for Q1 2014 and associated dataset
DOI: 10.7488/ds/226
title: ARCHER SP Quarterly Report 2Q 2014

description: ARCHER National Supercomputing Service SP Quarterly Report for Q2 2014 and associated dataset
DOI: 10.7488/ds/227
title: ARCHER SP Quarterly Report 3Q 2014

description: ARCHER National Supercomputing Service SP Quarterly Report for Q3 2014 and associated dataset
DOI: 10.7488/ds/194
title: Four cover designs for the EAR 33rd Edition 2013

description: Cover design tests for the 33rd Edition of the Edinburgh Architecture Research journal. The 2013 publication EAR Vol. 33 focused on the theme: Methodologies for Sustainable Projects. The images used for the four cover designs aimed to address the theme through the projection of light or images onto paper, wool, skin and canvas. The four covers were submitted for competition. The cover 'Jungenfeld_EAR33_CoverDesign_2.jpg' was selected for publication.
description: This item contains four .jpg images created in Photoshop CS3. The photographs featured in the four covers were digitally produced with a Nikon D80 Digital SLR camera between 2009-2012.
DOI: 10.7488/ds/214
title: hapbin: An efficient program for performing haplotype based scans for positive selection in large genomic datasets

description: These files contain genome-wide integrated haplotype scores (iHS) for each of the 26 populations in the phase 3 release of the 1000 genomes project. iHS were calculated using the hapbin program that can be downloaded from https://github.com/evotools/hapbin. The 1000 genomes phased haplotypes were obtained from mathgen.stats.ox.ac.uk/impute and hapbin was run with default parameters. The iHS are provided in two formats; BED and bedGraph. For each SNP the unstandardised iHS was calculated as ln(iHH1/iHH0) and these values normalised using hapbin’s default parameters. If the normalised iHS was negative the absolute value is reported and this is indicated by a 1 in the fourth column following the “:” of the BED format file. The bedGraph formatted data can be easily viewed along the genome at the UCSC genome browser by specifying the URL to the corresponding file at http://genome-euro.ucsc.edu/cgi-bin/hgCustom?clade=mammal&org=Human&db=hg37.
description: The following files are available for download here: (a) Documentation relating to methods ("fileDescriptions.txt"/"fileDescriptions.pdf"); (b) 572 files in bedGraph format (.bg.gz), covering different chromosomes and different populations from the 1000 Genomes project. These may be extracted using gunzip (on Linux/UNIX) or for example 7-Zip on Windows. (c) One tar (tape archive) file containing 572 files in BED format, similarly covering different chromosomes and populations. These may be untarred using the tar program (on Linux/UNIX) or for example 7-Zip on Windows.
DOI: 10.7488/ds/230
title: Hiberlink project data

description: Summary files (in XML format) listing URIs referenced in papers from arXiv, Elsevier, and PMC respectively (approximately 1 million URIs from 3 million papers in total). The focus of the Hiberlink project was to assess the extent of so-called ‘reference rot’, investigating how web links in online scientific and other academic articles fail to lead to the resources that were originally referenced. For further information, please see the PLoS One reference provided, and/or the project website.
DOI: 10.7488/ds/202
title: ARCHER CSE Performance Data and Service Report: Q1 2014

description: Data from SAFE (https://www.archer.ac.uk/safe) and Quarter 1 2014 Service Report from ARCHER Computational Science and Engineering Service. These contain data on usage and performance of the ARCHER CSE Service for quarter 1 2014 (January - March 2014).
DOI: 10.7488/ds/231
title: Robust Data-driven Macro-socioeconomic-energy Model, 7see-GB

description: In a resource-constrained world with growing population and demand for energy, goods, and services with commensurate environmental impacts, we need to understand how these trends relate to various aspects of economic activity. 7see-GB is a computational model that links energy demand through to final economic consumption, and is used to explore decadal scenarios for the UK macroeconomy. This dataset includes two published models (*.vpm) from the source model 7see-GB, version 5-10 (22Apr15). They show how results were created for the paper “A Robust Data-driven Macro-socioeconomic-energy Model”. The source model was developed in Vensim® (5.8b) and these published models can be viewed with the Vensim Reader, as provided with this dataset. There are instructions on how to navigate the published models and inspect variables shown in the paper. The .exe and .dmg files are free "Model Reader" executables for Windows/OSX which allow a user to run the model without buying the Vensim simulator.
description: a) 100922a_Vensim_venred32.zip - Vensim Model Reader for Windows and venred386.dmg for OSX. b) 141123a_7see5-10-GB_fbc1_lo-opt-hi_21Apr15.vpm: Published model “fbc1” in which investment feedback to the three larger industries is disconnected. It includes three model runs for various levels of feedback for each of the larger industries. c) 141123a_7see5-10-GB_fbc3_non-und-opt_22Apr15.vpm: Published model “fbc3” in which investment feedback to the three larger industries is reconnected. It includes three model runs for various levels damping of investment feedback. d) 150213a_7see_Vensim-published-model_instructions_v03_(22Apr15).pdf: Instructions on installing the Vensim Model Reader, opening the published models, navigating around the models and some examples of variables to inspect.
DOI: 10.7488/ds/229
title: Test

description: Obsolete - This Item was a test.
DOI: 10.7488/ds/247
title: Nonuniversality and finite dissipation in magnetohydrodynamic turbulence

description: This dataset contains the results of the study discussed in the paper 'Nonuniversality and finite dissipation in decaying magnetohydrodynamic turbulence': "A model equation for the Reynolds number dependence of the dimensionless dissipation rate in freely decaying homogeneous magnetohydrodynamic turbulence in the absence of a mean magnetic field is derived from the real-space energy balance equation, leading to Cε=Cε,∞+C/Rz−+O(1/R2z−)), where Rz− is a generalized Reynolds number. The constant Cε,∞ describes the total energy transfer flux. This flux depends on magnetic and cross helicities, because these affect the nonlinear transfer of energy, suggesting that the value of Cε,∞ is not universal. Direct numerical simulations were conducted on up to 20483 grid points, showing good agreement between data and the model. The model suggests that the magnitude of cosmological-scale magnetic fields is controlled by the values of the vector field correlations. The ideas introduced here can be used to derive similar model equations for other turbulent systems." [paper abstract]
description: This dataset contains: six .txt files with the results of the study, and one README.txt file.