cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/p5x0g-d3g89
title: Bacillus cereus

description: Bacillus cereus ATCC 14579
description: <strong>Tilt Series Date:</strong> 2013-05-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus cereus</p>
<strong>Strain:</strong> Bacillus cereus</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 19000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> pure spores</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-5/rawdata/</p>Bcereus_purespores0006.mrc,  Tilt Series (Pixel Size 0.56 nm), 2.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-5/rawdata/Bcereus_purespores0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        6_full.rec,  Reconstruction (Pixel Size 2.24 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-30-5/3dimage_32222/6_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/90d6k-sfd33
title: E.coli "strain11" A413T CheAoff

description: E.coli methylation site mutant locked in a CheA inactivating state
description: <strong>Tilt Series Date:</strong> 2011-08-18</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: °, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> mutant from John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown at 30C in TB to log phase, then treated with penicillin for one hour </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2011-08-18-35/rawdata/</p>Ecolistrain11_2_081811_0007.st,  Tilt Series (Pixel Size 0.0 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2011-08-18-35/rawdata/Ecolistrain11_2_081811_0007.st"
        > <i class="download icon"></i> Download </a></p>

        Ecolistrain11_2_081811_0007.rec,  Reconstruction (Pixel Size 0.0 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2011-08-18-35/3dimage_15572/Ecolistrain11_2_081811_0007.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7wvsj-rsr29
title: Methanotroph

description: Methanotroph, membranes
description: <strong>Tilt Series Date:</strong> 2013-06-22</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Methyloprofundus sedimenti</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Victoria Orphan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Starved</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-19/rawdata/</p>Methano_starved20007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-19/rawdata/Methano_starved20007.mrc"
        > <i class="download icon"></i> Download </a></p>

        Methano_starved20007_part121_2.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-19/3dimage_27639/Methano_starved20007_part121_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tjqr4-jzq22
title: drp1

description: purified drp1
description: <strong>Tilt Series Date:</strong> 2013-09-07</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Drp1</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> David Chan</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-15/rawdata/</p>drp10004.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-15/rawdata/drp10004.mrc"
        > <i class="download icon"></i> Download </a></p>

        drp10004_full.rec,  Reconstruction (Pixel Size 1.56 nm), 89.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-09-07-15/3dimage_30483/drp10004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yasxb-8wa89
title: HIV 293T

description: NLBi, WT, 293T, fixed
description: <strong>Tilt Series Date:</strong> 2014-05-15</p>
<strong>Data Taken By:</strong> Luiza Mendonca</p>
<strong>Species / Specimen:</strong> HIV and deltaNef</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> fixed w/ 1% formaldehyde</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-05-15-10/rawdata/</p>L024_1_NLBi_293T0008.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-05-15-10/rawdata/L024_1_NLBi_293T0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        L024_1_NLBi_293T0008_full.rec,  Reconstruction (Pixel Size 2.4 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lmm2014-05-15-10/3dimage_42670/L024_1_NLBi_293T0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mxnft-w1723
title: Cthermocellum2_d3

description: glu + microcrystalin cellulose
description: <strong>Tilt Series Date:</strong> 2015-05-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Clostridium thermocellum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> eric matson</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-08-20/rawdata/</p>Cthermo2_d30005.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-08-20/rawdata/Cthermo2_d30005.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cthermo2_d30005_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-08-20/3dimage_56167/Cthermo2_d30005_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b7fvx-ag013
title: dQ167_21h_induced

description: This is the strain in which dQ has been deactivated and an inducible plasmid is present for dQ
description: <strong>Tilt Series Date:</strong> 2014-12-30</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Arash Komeili</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-23/rawdata/</p>dQ167_21hinduced_atlas130009.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-23/rawdata/dQ167_21hinduced_atlas130009.mrc"
        > <i class="download icon"></i> Download </a></p>

        dQ167_21hinduced_atlas130009_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-23/3dimage_50031/dQ167_21hinduced_atlas130009_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.21227/tebp-g055
title: "Feature-Level Analysis of EMG Spectrograms for Hand Gesture Classification "

description: "This complementary dataset provides feature-level analyses derived from the Electromyography (EMG) Spectrograms Database for Hand Gesture Classification [1]. It contains a tabular dataset available in CSV format, with 408 rows\u2014one per spectrogram\u2014covering three gestures (open hand, closed hand, pinch). Each row includes global statistical descriptors (Mean, Standard Deviation, Maximum, Minimum, Skewness, Kurtosis, Energy, Contrast) and a 256-bin normalized histogram (Bin_0\u2013Bin_255).This dataset offers a structured representation of the original spectrogram images, enabling feature-based machine learning workflows and direct benchmarking against CNN-based approaches."
DOI: 10.22002/ses0p-qg754
title: Ecoli_Cojugation

description: These are donor E coli cells (ANB35) and recipient Ecoli cells (ANB24). These are the same  .  cells described in the Science paper (Direct visualization of horizontal gene transfer). The .  cells were mixed on the grid and then plunge frozen and imaged with cryo-ET without CLEM. .  Targets were imaged with cryo-ET randomly.
description: <strong>Tilt Series Date:</strong> 2019-02-28</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were sent to the Jensen lab from the lab of Ariel Lindner in Paris. These are the same . cells used in their Science paper (direct visualization of horizontal gene transfer).</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ANB 35 were grown in LB while ANB24 (Recipient) in M9. I followed the same protocol . described in the Science paper described above.</p>
<strong>Sample Preparation:</strong> The donor and recipient cells were mixed on the EM grid, incubated in the vitrobot chamber with . 100% humidity and then blotted and plunge frozen.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-110/rawdata/</p>Ecoli_CONjugation69.mrc,  Tilt Series (Pixel Size 0.541 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-110/rawdata/Ecoli_CONjugation69.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ecoli_CONjugation69_full.rec,  Reconstruction (Pixel Size 2.164 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-110/3dimage_107213/Ecoli_CONjugation69_full.rec"
        > <i class="download icon"></i> Download </a></p>

        Ecoli_CONjugation69.mrc.mdoc,  50.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2019-02-28-110/rawdata/Ecoli_CONjugation69.mrc.mdoc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xhdwj-31112
title: A413T co-overexpression

description: UU1607/pJC3/pPM25with A413T mutation (generated by Catherine)Strain sent from Heather Hodges (Kiessling lab), plasmids and strain published (from the PArkinson lab).Tomograms recorded with different starting angles
description: <strong>Tilt Series Date:</strong> 2013-09-11</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 41000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Laura Kiessling</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grew UU1607/pJC3/pPM25 overnight in 5mL TB + 3.8µl Cm + 5µl CarbDiluted back 1:50 into 200mL TB + 152µl Cm + 200µl Carb + 50µl 1M IPTG + 200µl Na-salicylateGrew ~2 hours to mid-log phaseSpun down 10' at 5,000 x gResuspended in 300µl lysis buffer + 0.1µl PMSF + 0.75 µl 1,10-phenanthrolineAdded 33.3µl (2mg/ml) fresh lysozyme solution (20mg/ml in 10mM Tris-HCl, pH 8.0)Incubated 45' at 37°CAdded 1.67µl 1M MgCl2, 0.2µl 1M CaCl2, 0.33µl DNase IIncubated 30' at 37°CSpun down 4000 g 5 min Resuspended in activity buffer (cold room) without glycerol</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-11-12/rawdata/</p>A413Tatlas2fourtydegreeplus0021.mrc,  Tilt Series (Pixel Size 0.26 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-11-12/rawdata/A413Tatlas2fourtydegreeplus0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        A413Tatlas2fourtydegreeplus0021.rec,  Reconstruction (Pixel Size 0.0 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-11-12/3dimage_46570/A413Tatlas2fourtydegreeplus0021.rec"
        > <i class="download icon"></i> Download </a></p>

        A413Tatlas2fourtydegreeplus0021SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 12.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-11-12/3dimage_46571/A413Tatlas2fourtydegreeplus0021SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w9fmk-7rg20
title: Salmonella typhimurium

description: Session notes: Salmonella fliL minicells with T3SS Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-19</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-19-16_slicer4433.jpg: Flagellar motor mba2012-09-19-16_slicer4435.jpg: Flagella mba2012-09-19-16_slicer4436.jpg: Intracellular vesicle mba2012-09-19-16_slicer4437.jpg: Flagellum or Appendage mba2012-09-19-16_slicer4438.jpg: Flagellar motor mba2012-09-19-16_slicer4439.jpg: Flagellar motor mba2012-09-19-16_slicer4441.jpg: Flagellar motor mba2012-09-19-16_slicer4442.jpg: Flagellar motor
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-16/rawdata/</p>12sep19a_fliL_0024.st,  Tilt Series (Pixel Size 0.512 nm), 636.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-16/rawdata/12sep19a_fliL_0024.st"
        > <i class="download icon"></i> Download </a></p>

        12sep19a_fliL_0024.rec,  Reconstruction (Pixel Size 1.12 nm), 353.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-19-16/3dimage_23115/12sep19a_fliL_0024.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rcvp8-4g044
title: Mycobacter smegmatis pneumonia

description: type VII secretion system in Mycobacterium smegmatis Wild type Mycobacterium smegmatis strain is expected to have T7SS, while mutant to be defective.KP48
description: <strong>Tilt Series Date:</strong> 2013-06-10</p>
<strong>Data Taken By:</strong> Alasdair McDowall</p>
<strong>Species / Specimen:</strong> Mycobacterium smegmatis</p>
<strong>Strain:</strong> 3877</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Koushik Paul /  Eric BrownGenentech, Inc.1 DNA WaySouth San Francisco, CA 94080(650) 225-6248Fax: (650) 225-1107</p>
<strong>Purification / Growth Conditions / Treatment:</strong> KP48 M. smegmatis Δ3877 (ΔeccD1) 7H9 media </p>
<strong>Sample Preparation:</strong> 3ul + 10nm AuR2/2 quantifoils 4.5offset 1 blot 2s 1s drain</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-06-10-23/rawdata/</p>kp48_10021.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-06-10-23/rawdata/kp48_10021.mrc"
        > <i class="download icon"></i> Download </a></p>

        kp48_10021_full.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-06-10-23/3dimage_27571/kp48_10021_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.zh563u
title: Occurrence Download

description: A dataset listing the 5206 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Observations du Conservatoire botanique national du Bassin parisien."
 ]
}

 The dataset's 5206 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007071-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/a9qhz-1yx48
title: Mycobacter smegmatis pneumonia

description: type VII secretion system in Mycobacterium smegmatis Wild type Mycobacterium smegmatis strain is expected to have T7SS, while mutant to be defective.KP52s
description: <strong>Tilt Series Date:</strong> 2013-06-10</p>
<strong>Data Taken By:</strong> Alasdair McDowall</p>
<strong>Species / Specimen:</strong> Mycobacterium smegmatis</p>
<strong>Strain:</strong> 3871</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Koushik Paul /  Eric BrownGenentech, Inc.1 DNA WaySouth San Francisco, CA 94080(650) 225-6248Fax: (650) 225-1107</p>
<strong>Purification / Growth Conditions / Treatment:</strong> KP52 M. smegmatisΔ3871   (ΔEcccA1) sauton media @ 37C</p>
<strong>Sample Preparation:</strong> 3ul + 10nm AuR2/2 quantifoils 4.5offset 1 blot 2s 1s drain</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/amw2013-06-10-35/rawdata/</p>kp52s0012.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        kp52s0012_part121_2.rec,  Reconstruction (Pixel Size 1.92 nm), 623.6 MB  
        
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