cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6xnx7r
title: Occurrence Download

description: A dataset containing 685674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carex strigosa Huds., Cephalaria transsylvanica (L.) Schrad. ex Roem. & Schult., Cytisus nigricans L., Doronicum L., Lonicera nigra L., Picea omorika (Pancic) Purk., Spergula segetalis (L.) Vill., Alchemilla alpina L., Corylus maxima Mill., Miscanthus ×longiberbis (Hack.) Nakai, Salix ×pendulina Wender., Scilla ingridiae Speta, Rosa ×francofurtana Münchh., Neotrinia splendens (Trin.) M.Nobis, P.D.Gudkova & A.Nowak, Cotoneaster zabelii C.K.Schneid., Cytisophyllum sessilifolium (L.) O.Lang, Goniolimon tataricum (L.) Boiss., Hieracium chlorocephalum Wimm., Hieracium gombense Lagger ex Christener, Salix helvetica Vill., Schlagintweitia huteri (Hausm. ex Bamb.) Gottschl. & Greuter, Seseli longifolium L., Seseli osseum Crantz, Alchemilla tytthantha Juz., Epilobium brunnescens (Cockayne) P.H.Raven & Engelhorn, Sesamoides purpurascens (L.) G.López, Vaccinium ×atlanticum E.P.Bicknell, Dactylorhiza majalis (Rchb.) P.F.Hunt & Summerh., Galeopsis pubescens Besser, Pinus heldreichii H.Christ, Victoria amazonica (Poepp.) Sowerby, Barclaya longifolia Wall., Nuphar japonica DC., Helleborus argutifolius Viv., Papaver atlanticum (Ball) Coss., Silene flos-jovis (L.) Desr., Bistorta affinis (D.Don) Greene, Tamarix tetrandra Pall. ex M.Bieb., Hamamelis mollis Oliv., Populus ontariensis Lodd. ex Loudon, Corylus colurna L., Dasiphora fruticosa (L.) Rydb., Brassica cretica Lam., Impatiens hawkeri W.Bull, Cyclamen persicum Mill., Erythranthe cuprea (Dombrain) G.L.Nesom, Callicarpa bodinieri H.Lév., Viburnum farreri Stearn, Campanula garganica Ten., Helianthus ×doronicoides (Lam.) R.C.Jacks.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 685674 records from 1855 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012966-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc111128756
title: XQSam (2 Sam 20.22-24), DSS F.114

description: [Text Description:] Remains of three lines from 2 Samuel ❧ [Text or Publication Number Note:] DSS F.114; DSS F.Sam3; Schoyen MS 5233/1; XQSam ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 1.6x2.1cm; medium-dark brown, worn ❧ [Physical Object Note:] Remains of 3 lines
DOI: 10.25549/inscriptifact-ouc111128649
title: XQSam (2 Sam 20.22-24), DSS F.114

description: [Text Description:] Remains of three lines from 2 Samuel ❧ [Text or Publication Number Note:] DSS F.114; DSS F.Sam3; Schoyen MS 5233/1; XQSam ❧ [Medium:] Parchment ❧ [Script Note:] Jewish ❧ [Physical Object Description:] 1.6x2.1cm; medium-dark brown, worn ❧ [Physical Object Note:] Remains of 3 lines
DOI: 10.15468/dl.6w3zay
title: Occurrence Download

description: A dataset containing 32988715 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinopterygii"
 ]
}

 The dataset includes 32988715 records from 2779 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047911-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5adnwf
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Fumaria muralis var. laeta Lowe"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019244-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.haazqv
title: Occurrence Download

description: A dataset containing 310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ceroxylon Bonpl. ex DC."
 ]
}

 The dataset includes 310 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019243-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xe4eb4
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "OccurrenceStatus is Present",
 "TaxonKey is Amauropelta regnelliana (C.Chr.) Salino & T.E.Almeida"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019245-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14714504
title: From Alarms to Real Bugs: Multi-target Multi-step Directed Greybox Fuzzing for Static Analysis Result Verification (Paper Artifact)
DOI: 10.5281/zenodo.14743328
title: From Alarms to Real Bugs: Multi-target Multi-step Directed Greybox Fuzzing for Static Analysis Result Verification (Paper Artifact)
DOI: 10.5281/zenodo.14751242
title: From Alarms to Real Bugs: Multi-target Multi-step Directed Greybox Fuzzing for Static Analysis Result Verification (Paper Artifact)
DOI: 10.5281/zenodo.15059599
title: From Alarms to Real Bugs: Multi-target Multi-step Directed Greybox Fuzzing for Static Analysis Result Verification (Paper Artifact)
DOI: 10.5066/p13rbztu
title: Selected Ciénega and Surrounding Floodplain Polygons of the Greater Madrean Archipelago Ecoregion

description: Ciénegas are freshwater to brackish wetlands in arid and semi-arid regions of North America, although they are primarily found in the southwestern U.S. and northwestern Mexico at elevations usually below 2000 meters. They are associated with groundwater or actively moving fresh water that historically resulted in perennial surface waters persisting for decades to centuries. The extent of these wetland communities has greatly diminished since European settlement and ciénegas are now considered imperiled, threatening the flora and fauna that rely on these unique water sources. For this study, 31 ciénegas from a “Spatial Database of Known and Potential Ciénegas in the Greater Madrean Archipelago Ecoregion” (Middleton et al., 2022) in the U.S. were mapped using manual digitization, automated image classification and sophisticated filtering techniques on current and historical National Agriculture Imagery Program (NAIP) aerial imagery. The polygons in this database represent both the ciénega and its surrounding floodplain environment to account for changing groundwater and potential influence on vegetation. Although the ciénega is depicted as the core of the wetland, the surrounding floodplain with trees and non-wetland species is included as it may have once been part of the former ciénega. Open water was carefully mapped and excluded from the final polygons, so that estimates of vegetation indices (NDVI and NDII) through time would not be as affected by changing water signatures. Control polygons generated from buffering the ciénega polygons (by 90 and 180 meters) are also included to compare relative change.
DOI: 10.15468/dd.6jxctw
title: iNaturalist occurrence data for "Accounting for severe droughts increases the extinction risk for cacti"

description: Occurrence data were downloaded from iNaturalist by year using the following query, "quality_grade=any&identifications=any&taxon_id=47903&created_on=YEAR", where YEAR indicates the year. Data for 2023 were extracted on November 2, 2023, at 12:00 PM (GMT-7). Subsequent data cleaning included subsetting Research-grade observations.

The following columns were included: id, observed_on_string, observed_on, time_observed_at, time_zone, user_id, user_login, user_name, created_at, updated_at, quality_grade, license, url, image_url, sound_url, tag_list, description, num_identification_agreements, num_identification_disagreements, captive_cultivated, oauth_application_id, place_guess, latitude, longitude, positional_accuracy, private_place_guess, private_latitude, private_longitude, public_positional_accuracy, geoprivacy, taxon_geoprivacy, coordinates_obscured, positioning_method, positioning_device, place_town_name, place_county_name, place_state_name, place_country_name, place_admin1_name, place_admin2_name, species_guess, scientific_name, common_name, iconic_taxon_name, taxon_id, taxon_kingdom_name, taxon_phylum_name, taxon_subphylum_name, taxon_superclass_name, taxon_class_name, taxon_subclass_name, taxon_superorder_name, taxon_order_name, taxon_suborder_name, taxon_superfamily_name, taxon_family_name, taxon_subfamily_name, taxon_supertribe_name, taxon_tribe_name, taxon_subtribe_name, taxon_genus_name, taxon_genushybrid_name, taxon_species_name, taxon_hybrid_name, taxon_subspecies_name, taxon_variety_name, taxon_form_name
DOI: 10.15468/dl.tdpju6
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-18.18373 30.89629,-14.44751 30.89629,-14.44751 33.6212,-18.18373 33.6212,-18.18373 30.89629))",
 "OccurrenceStatus is Present",
 "TaxonKey is Helichrysum devium J.Y.Johnson",
 "Year 1975-2025"
 ]
}

 The dataset includes 116 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019247-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28635407
title: Supplementary Tables S1 and S2

description: Skeletal muscles secrete a variety of cytokines in response to inflammatory stimuli such as lipopolysaccharides (LPS). However, the contributions of resident macrophages or other non-muscle cells to the cytokine secretory responses of muscle are not well understood. Here we tested the LPS-responsiveness of mouse soleus when a critical toll receptor adapter protein, (Myd88) was knocked out of all myeloid-derived cells (largely resident macrophages). The phenotype is referred to as LyzMyd88<sup>-/-</sup>. In solei from LyzMyd88<sup>-/- </sup>mice, cytokine secretory rates for IL-6 and KC(CXCL1) were reduced by ~50% during the first hour of LPS exposure compared to litter mate Myd88 controls. In the second hour of exposure, though G-CSF, IL-6, KC(CXCL1) and MCP-1(CCL2) were elevated nearly 5-10-fold compared to the first hour, only MCP-1 decreased secretion in LyzMyd88<sup>-/-</sup> muscles. We also tested the secretory response to buffer containing 1% sterile mouse plasma. Dilute plasma is known to amplify the responses of macrophages to LPS. One per cent plasma affected baseline measures of some cytokines but resulted in no further increases in cytokine secretion over either the first or second hour of exposure. However, both plasma-free and plasma-containing buffer induced small but significant increases in secretion of several cytokines over the sample collection period. Overall, the results are consistent with a significant early contribution of myeloid-derived, resident immune cells to the cytokine secretory responses in intact oxidative skeletal muscle.
DOI: 10.15468/dl.nsewfk
title: Occurrence Download

description: A dataset containing 625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Noctilio leporinus (Linnaeus, 1758)",
 "Year 1970-2000"
 ]
}

 The dataset includes 625 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019248-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bx77dj
title: Occurrence Download

description: A dataset containing 12406 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sequoiadendron giganteum (Lindl.) J.T.Buchholz"
 ]
}

 The dataset includes 12406 records from 379 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019249-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfgn38
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stephanitis pyrioides (Scott, 1874)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 395 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019250-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15051397
title: RGB-to-NDVI-conversion dataset

description: Dataset for the article: Evaluating Generalization of Methods for Artificially Generating NDVI from UAV RGB Imagery in Vineyards

A full description of the article can be found at MDPI Remote Sensing: https://www.mdpi.com/2072-4292/17/3/512

As well as the base data for training Pix2Pix architectures presented on GitHub.

This data repository contains:



p2p_data.rar which are the preprocessed chips which were used to train and evaluate the Pix2Pix models on. In this folder:



256x256 and 512x512 chips each in individual folders per sensor:



ms_512 

ms_256

rgb_512

ms_256



256x256: ms contains only training useful chips, rgb_256 contains all the test chips from can2023 and btg2021 as well



A=RGB 

B=NDVI 

AB aligned A+B



512x512: Each folder contains the structure that Pix2Pix expects:



A for 3band imgs, B for NDVI

train_A/test_A/val_A -> RGB or msRGB chips from BTG2022

train_B/test_B/val_B -> NDVI chips from BTG2022

test_2021_A -> msRGB chips from BTG2021

test_2023_A -> RGB chips from CAN2023

*_B -> NDVI chips





orthos.rar, used in the earliest stages to create chips, and used for evaluation again later.



canyelles: RGB, ndvi, chm, dem, dsm

btg2021, ms, ndvi, chm, dem, dsm

btg2022, ms, RGB, ndvi, chm, dem, dsm



preprocessed.rar:



Input files for the evaluation code, after aligning rasters, reconstructing chips to orthos
DOI: 10.5281/zenodo.15051398
title: RGB-to-NDVI-conversion dataset

description: Dataset for the article: Evaluating Generalization of Methods for Artificially Generating NDVI from UAV RGB Imagery in Vineyards

A full description of the article can be found at MDPI Remote Sensing: https://www.mdpi.com/2072-4292/17/3/512

As well as the base data for training Pix2Pix architectures presented on GitHub.

This data repository contains:



p2p_data.rar which are the preprocessed chips which were used to train and evaluate the Pix2Pix models on. In this folder:



256x256 and 512x512 chips each in individual folders per sensor:



ms_512 

ms_256

rgb_512

ms_256



256x256: ms contains only training useful chips, rgb_256 contains all the test chips from can2023 and btg2021 as well



A=RGB 

B=NDVI 

AB aligned A+B



512x512: Each folder contains the structure that Pix2Pix expects:



A for 3band imgs, B for NDVI

train_A/test_A/val_A -> RGB or msRGB chips from BTG2022

train_B/test_B/val_B -> NDVI chips from BTG2022

test_2021_A -> msRGB chips from BTG2021

test_2023_A -> RGB chips from CAN2023

*_B -> NDVI chips





orthos.rar, used in the earliest stages to create chips, and used for evaluation again later.



canyelles: RGB, ndvi, chm, dem, dsm

btg2021, ms, ndvi, chm, dem, dsm

btg2022, ms, RGB, ndvi, chm, dem, dsm



preprocessed.rar:



Input files for the evaluation code, after aligning rasters, reconstructing chips to orthos
DOI: 10.15468/dl.cd8e98
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Haemagogus leucocelaenus (Dyar & Shannon, 1924)",
 "Year 1970-2025"
 ]
}

 The dataset includes 47 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019252-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12773346
title: Data GebStart-Study

description: Data set, codebook and data processing file for the main publication of the GebStart-study.
DOI: 10.5281/zenodo.12773347
title: Data GebStart-Study

description: Data set, codebook and data processing file for the main publication of the GebStart-study.
DOI: 10.15468/dl.73qzt4
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium ovalifolium subsp. pyramidatum (Lowe) A.Hansen & Sunding"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019254-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jdbv8
title: Occurrence Download

description: A dataset containing 203347 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Coronilla varia L.)"
 ]
}

 The dataset includes 203347 records from 1642 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019229-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive112225.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112225.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103870.10fu
title: SH0103870.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2p9jbw
title: CCDC 2481808: Experimental Crystal Structure Determination

description: Related Article: Kailing Yang, Yu Zhang, Rongkun Miao, Chending Luo, Xiaoxiao Yuan, Xueqing Ma, Nan Wang, Guanqun Zhan, Zengjun Guo|2025|Bioorg.Chem.|168||doi:10.1016/j.bioorg.2025.109284
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive112226.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112226.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103871.10fu
title: SH0103871.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5517/ccdc.csd.cc2pb7y7
title: CCDC 2482509: Experimental Crystal Structure Determination

description: Related Article: Yu Wu, Xingxin Bai, Jing Xu, Lanyue Hu, Yulong Li, Muhammad Shofiyullah, Utkarsh Kumar Sharma, Ahamad Imran, Ravindra Kumar Gupta, Abhinav Kumar|2025|Dyes Pigm.|246||doi:10.1016/j.dyepig.2025.113399
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13145/bacdive112227.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive112227.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0103872.10fu
title: SH0103872.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.