cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.h8c3yz
title: Occurrence Download

description: A dataset containing 19291 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jacaranda mimosifolia D.Don"
 ]
}

 The dataset includes 19291 records from 393 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085012-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmsjqu
title: Occurrence Download

description: A dataset containing 25689 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diabrotica undecimpunctata Mannerheim, 1843",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 25689 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0085014-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj2m7q
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Culex tritaeniorhynchus Giles, 1901"
 ]
}

 The dataset includes 189 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021308-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6287363
title: Old world quail time-calibrated MCMCtree output, scale in tens of millions of years.

description: Output tree from MCMCtree time-calibration analysis<br>
DOI: 10.6084/m9.figshare.6287363.v1
title: Old world quail time-calibrated MCMCtree output, scale in tens of millions of years.

description: Output tree from MCMCtree time-calibration analysis<br>
DOI: 10.34740/kaggle/dsv/1450237
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.6287339
title: Nexus format alignment of UCE sequence data.

description: Nexus format alignment of UCE sequence data.<br>
DOI: 10.6084/m9.figshare.6287339.v2
title: Nexus format alignment of UCE sequence data.

description: Nexus format alignment of UCE sequence data.<br>
DOI: 10.6084/m9.figshare.6287339.v1
title: owq.nex

description: Nexus format alignment of UCE sequence data.<br>
DOI: 10.6084/m9.figshare.6287204
title: Variability of attention bias in socially anxious adolescents: differences in fixation duration toward adult and adolescent face stimuli

description: Prior research on attention bias in anxious youth, often utilising a visual dot probe task, has yielded inconsistent findings, which may be due to how bias is assessed and/or variability in the phenomenon. The present study utilises eye gaze tracking to assess attention bias in socially anxious adolescents, and explores several methodological and within-subject factors that may contribute to variability in attention bias. Attention bias to threat was measured in forty-two treatment-seeking adolescents (age 12–16 years) diagnosed with Social Anxiety Disorder. Bias scores toward emotional stimuli (vigilant attention) and bias scores away from emotional stimuli (avoidant attention) were explored. Bias scores changed between vigilance and avoidance within individuals and over the course of stimulus presentation. These differences were not associated with participant characteristics nor with self-reported social anxiety symptoms. However, clinician rated severity of social anxiety, explained a significant proportion of variance in the bias scores for adult, but not the adolescent, stimuli. Variability in attention bias among socially anxious adolescents is common and varies as a function of stimulus duration and type. Results may inform stimulus selection for future research.
DOI: 10.6084/m9.figshare.6287204.v1
title: Variability of attention bias in socially anxious adolescents: differences in fixation duration toward adult and adolescent face stimuli

description: Prior research on attention bias in anxious youth, often utilising a visual dot probe task, has yielded inconsistent findings, which may be due to how bias is assessed and/or variability in the phenomenon. The present study utilises eye gaze tracking to assess attention bias in socially anxious adolescents, and explores several methodological and within-subject factors that may contribute to variability in attention bias. Attention bias to threat was measured in forty-two treatment-seeking adolescents (age 12–16 years) diagnosed with Social Anxiety Disorder. Bias scores toward emotional stimuli (vigilant attention) and bias scores away from emotional stimuli (avoidant attention) were explored. Bias scores changed between vigilance and avoidance within individuals and over the course of stimulus presentation. These differences were not associated with participant characteristics nor with self-reported social anxiety symptoms. However, clinician rated severity of social anxiety, explained a significant proportion of variance in the bias scores for adult, but not the adolescent, stimuli. Variability in attention bias among socially anxious adolescents is common and varies as a function of stimulus duration and type. Results may inform stimulus selection for future research.
DOI: 10.6084/m9.figshare.6287198
title: Enhanced regeneration and hepatoprotective effects of interleukin 22 fusion protein on a pre-damaged liver undergoing partial hepatectomy.pdf

description: All the details about each data table is described in the uploaded file.
DOI: 10.6084/m9.figshare.6287198.v1
title: Enhanced regeneration and hepatoprotective effects of interleukin 22 fusion protein on a pre-damaged liver undergoing partial hepatectomy.pdf

description: All the details about each data table is described in the uploaded file.
DOI: 10.6084/m9.figshare.6287171
title: Dataset for: Adapting population models for application in pesticide risk assessment: a case study with Mead’s milkweed

description: Population models can facilitate assessment of potential impacts of pesticides on populations or species rather than individuals and have been identified as important tools for pesticide risk assessment of non-target species including those listed under the Endangered Species Act (ESA). Few examples of population models developed for this specific purpose are available, however, population models are commonly used in conservation science as a tool to project the viability of populations and the long-term outcomes of management actions. We present a population model for Mead’s milkweed (Asclepias meadii), a species listed as threatened under the ESA throughout its range across the Midwestern U.S. We adapted a published population model based on demographic field data for application in pesticide risk assessment. Exposure and effects were modeled as reductions of sets of vital rates in the transition matrices, simulating both lethal and sublethal effects of herbicides. Two herbicides, atrazine and mesotrione, were used as case study examples to evaluate a range of assumptions about potential exposure-effects relationships. In addition, we assessed buffers (i.e. setback distances of herbicide spray applications from the simulated habitat) as hypothetical mitigation scenarios and evaluated their influence on population-level effects in the model. The model results suggest that buffers can be effective in reducing risk from herbicide drift to plant populations. These case studies demonstrate that existing population models can be adopted and integrated with exposure and effects information for use in pesticide risk assessment.
DOI: 10.6084/m9.figshare.6287171.v1
title: Dataset for: Adapting population models for application in pesticide risk assessment: a case study with Mead’s milkweed

description: Population models can facilitate assessment of potential impacts of pesticides on populations or species rather than individuals and have been identified as important tools for pesticide risk assessment of non-target species including those listed under the Endangered Species Act (ESA). Few examples of population models developed for this specific purpose are available, however, population models are commonly used in conservation science as a tool to project the viability of populations and the long-term outcomes of management actions. We present a population model for Mead’s milkweed (Asclepias meadii), a species listed as threatened under the ESA throughout its range across the Midwestern U.S. We adapted a published population model based on demographic field data for application in pesticide risk assessment. Exposure and effects were modeled as reductions of sets of vital rates in the transition matrices, simulating both lethal and sublethal effects of herbicides. Two herbicides, atrazine and mesotrione, were used as case study examples to evaluate a range of assumptions about potential exposure-effects relationships. In addition, we assessed buffers (i.e. setback distances of herbicide spray applications from the simulated habitat) as hypothetical mitigation scenarios and evaluated their influence on population-level effects in the model. The model results suggest that buffers can be effective in reducing risk from herbicide drift to plant populations. These case studies demonstrate that existing population models can be adopted and integrated with exposure and effects information for use in pesticide risk assessment.
DOI: 10.6084/m9.figshare.6287147
title: Lutein improves cell viability and reduces <i>Alu</i> RNA accumulation in hydrogen peroxide challenged retinal pigment epithelial cells

description: <b>Purpose:</b> Dysfunction of the microRNA (miRNA)-processing enzyme DICER1 and <i>Alu</i> RNA accumulation are linked to the pathogenesis of age-related macular degeneration (AMD). This study determined the optimal dose of lutein (LUT) and zeaxanthin (ZEA) to protect human retinal pigment epithelium (RPE) cells against hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>). The effect of the optimal dose of LUT and ZEA as DICER1 and <i>Alu</i> RNA modulators in cultured human RPE cells challenged with H<sub>2</sub>O<sub>2</sub> was investigated. <b>Materials and methods:</b> ARPE-19 cells were pre-treated with LUT, ZEA, or both for 24 h before 200 μM H<sub>2</sub>O<sub>2</sub> challenge. Cell viability was measured by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. DICER1 and <i>Alu</i> RNA were quantified by western blotting and real-time polymerase chain reaction, respectively. <b>Results:</b> H<sub>2</sub>O<sub>2</sub> increased cell <i>Alu</i> RNA expression and decreased cell viability of ARPE-19, but had no significant impact on the DICER1 protein level. LUT, alone and in combination with ZEA pre-treatment, prior to H<sub>2</sub>O<sub>2</sub> challenge significantly improved cell viability of ARPE-19 and reduced the level of <i>Alu</i> RNA compared to the negative control. <b>Conclusions:</b> These results support the use of LUT alone, and in combination with ZEA, in AMD prevention and treatment. This study is also the first to report LUT modulating effects on <i>Alu</i> RNA.
DOI: 10.6084/m9.figshare.6287147.v1
title: Lutein improves cell viability and reduces <i>Alu</i> RNA accumulation in hydrogen peroxide challenged retinal pigment epithelial cells

description: <b>Purpose:</b> Dysfunction of the microRNA (miRNA)-processing enzyme DICER1 and <i>Alu</i> RNA accumulation are linked to the pathogenesis of age-related macular degeneration (AMD). This study determined the optimal dose of lutein (LUT) and zeaxanthin (ZEA) to protect human retinal pigment epithelium (RPE) cells against hydrogen peroxide (H<sub>2</sub>O<sub>2</sub>). The effect of the optimal dose of LUT and ZEA as DICER1 and <i>Alu</i> RNA modulators in cultured human RPE cells challenged with H<sub>2</sub>O<sub>2</sub> was investigated. <b>Materials and methods:</b> ARPE-19 cells were pre-treated with LUT, ZEA, or both for 24 h before 200 μM H<sub>2</sub>O<sub>2</sub> challenge. Cell viability was measured by 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) assay. DICER1 and <i>Alu</i> RNA were quantified by western blotting and real-time polymerase chain reaction, respectively. <b>Results:</b> H<sub>2</sub>O<sub>2</sub> increased cell <i>Alu</i> RNA expression and decreased cell viability of ARPE-19, but had no significant impact on the DICER1 protein level. LUT, alone and in combination with ZEA pre-treatment, prior to H<sub>2</sub>O<sub>2</sub> challenge significantly improved cell viability of ARPE-19 and reduced the level of <i>Alu</i> RNA compared to the negative control. <b>Conclusions:</b> These results support the use of LUT alone, and in combination with ZEA, in AMD prevention and treatment. This study is also the first to report LUT modulating effects on <i>Alu</i> RNA.
DOI: 10.6084/m9.figshare.6287144
title: Introducing federated queries with Wikidata

description: Here are the slides and example ShEx files used in the advanced SPARQL workshop at the EuropeanaTech 2018 Wikidata workshop day in the Haque on May 14, 2018https://www.wikidata.org/wiki/Wikidata:Events/EuropeanaTech_2018_Wikidata_workshop_day<br>
DOI: 10.6084/m9.figshare.6287144.v1
title: Introducing federated queries with Wikidata

description: Here are the slides and example ShEx files used in the advanced SPARQL workshop at the EuropeanaTech 2018 Wikidata workshop day in the Haque on May 14, 2018https://www.wikidata.org/wiki/Wikidata:Events/EuropeanaTech_2018_Wikidata_workshop_day<br>
DOI: 10.6084/m9.figshare.6286943
title: MOESM1 of No detectable differential microRNA expression between non-atherosclerotic arteries of type 2 diabetic patients (treated or untreated with metformin) and non-diabetic patients

description: Additional file 1. MicroRNA microarray results. MicroRNA microarray data analysis for 677 probes comparing (1) T2DM vs. non-DM patients, (2) T2DM (− Met) vs. non-DM patients, and (3) T2DM (+ Met) vs. T2DM (− Met).
DOI: 10.6084/m9.figshare.6286943.v1
title: MOESM1 of No detectable differential microRNA expression between non-atherosclerotic arteries of type 2 diabetic patients (treated or untreated with metformin) and non-diabetic patients

description: Additional file 1. MicroRNA microarray results. MicroRNA microarray data analysis for 677 probes comparing (1) T2DM vs. non-DM patients, (2) T2DM (− Met) vs. non-DM patients, and (3) T2DM (+ Met) vs. T2DM (− Met).
DOI: 10.17870/bathspa.6286508
title: Ambient Literature Participant Research

description: This dataset contains transcripts of interviews with participants as part of the Ambient Literature research project. These interviews were conducted in June and July 2017 and March, April, and May of 2018 regarding participants' experiences of commissioned works of new media. Interviews were conducted face to face immediately after they completed one of the experiences or were conducted later over the telephone or Skype. The interviews were conducted in a semi structured fashion, following interview guides tailored for each of the experiences and allowing for more open ended discussion of the works. These interviews followed along themes of participants' relation to place, immersion, technology, and media form in order to get a sense of audiences experience with these works. Those interviewed about their experience of the works were a self selecting group of participants with an interest in trying new forms of media experience, with experience levels with new media ranging from none to those working in the field. In total, transcripts of 48 interviews are presented here. 40 of the interviews are presented as transcripts with individual participants, while interviews with 8 participants are presented in aggregate in order to preserve anonymity.
DOI: 10.17870/bathspa.6286508.v2
title: Ambient Literature Participant Research

description: This dataset contains transcripts of interviews with participants as part of the Ambient Literature research project. These interviews were conducted in June and July 2017 and March, April, and May of 2018 regarding participants' experiences of commissioned works of new media. Interviews were conducted face to face immediately after they completed one of the experiences or were conducted later over the telephone or Skype. The interviews were conducted in a semi structured fashion, following interview guides tailored for each of the experiences and allowing for more open ended discussion of the works. These interviews followed along themes of participants' relation to place, immersion, technology, and media form in order to get a sense of audiences experience with these works. Those interviewed about their experience of the works were a self selecting group of participants with an interest in trying new forms of media experience, with experience levels with new media ranging from none to those working in the field. In total, transcripts of 48 interviews are presented here. 40 of the interviews are presented as transcripts with individual participants, while interviews with 8 participants are presented in aggregate in order to preserve anonymity.
DOI: 10.17870/bathspa.6286508.v1
title: Ambient Literature Participant Research

description: This dataset contains transcripts of interviews with participants as part of the Ambient Literature research project. These interviews were conducted in June and July 2017 and March, April, and May of 2018 regarding participants' experiences of commissioned works of new media. Interviews were conducted face to face immediately after they completed one of the experiences or were conducted later over the telephone or Skype. The interviews were conducted in a semi structured fashion, following interview guides tailored for each of the experiences and allowing for more open ended discussion of the works. These interviews followed along themes of participants' relation to place, immersion, technology, and media form in order to get a sense of audiences experience with these works. Those interviewed about their experience of the works were a self selecting group of participants with an interest in trying new forms of media experience, with experience levels with new media ranging from none to those working in the field. In total, transcripts of 40 interviews are presented here.
DOI: 10.6084/m9.figshare.6285602
title: Incorporation of fallow weed increases phosphorus availability in a farmer’s organic rice fields on allophanic Andosol in eastern Japan

description: We investigated the amount of soil phosphorus (P) in a farmer’s paddy fields under organic farming (OF) for various periods from 0 to 22 years as well as other farmers’ fields under conventional farming. All the fields are located in allophanic Andosol with long history of P fertilizer application, and some of them have been converted to OF across years. After conversion to OF, P was supplied only with winter fallow weeds mainly Foxtail (<i>Alopecurus aequalis</i>), rice residues (rice bran and straw), and guano. We determined total-P (Tot-P) and plant-available P (Av-P), which consists of Truog-P (Tru-P) and Bray-2-P under reducing condition with ascorbic acid (Asc-P), in soils of each field. For both Av-Ps, the ratio to Tot-P increased across years under OF following quadratic functions with both linear and quadratic terms being statistically significant. The ratios showed little changes for the initial 15 (Tru-P) or 10 (Asc-P) years and increased rapidly thereafter. These temporal changes in Av-P were consistent with the rapid increase of the amount of P accumulated in the winter fallow weeds and incorporated in the fields after beginning of OF. These results led us to the hypothesis that the incorporation of winter weeds has contributed to the increase of Av-P in the organic fields across years. We tested this hypothesis by investigating temporal changes of Av-P after suspending the weed incorporation for 2 consecutive years in plots of the organic fields. Both Av-Ps were significantly greater in plots with continued weed incorporation (CWI) than those in plots with its suspension. We further found that the increase of Asc-P in plots with CWI was 4.9-fold the input of total P in the incorporated weeds. This suggests that the incorporation of winter fallow weeds enhanced soil-P availability beyond the supply of P accumulated in the weeds.
DOI: 10.6084/m9.figshare.6285602.v1
title: Incorporation of fallow weed increases phosphorus availability in a farmer’s organic rice fields on allophanic Andosol in eastern Japan

description: We investigated the amount of soil phosphorus (P) in a farmer’s paddy fields under organic farming (OF) for various periods from 0 to 22 years as well as other farmers’ fields under conventional farming. All the fields are located in allophanic Andosol with long history of P fertilizer application, and some of them have been converted to OF across years. After conversion to OF, P was supplied only with winter fallow weeds mainly Foxtail (<i>Alopecurus aequalis</i>), rice residues (rice bran and straw), and guano. We determined total-P (Tot-P) and plant-available P (Av-P), which consists of Truog-P (Tru-P) and Bray-2-P under reducing condition with ascorbic acid (Asc-P), in soils of each field. For both Av-Ps, the ratio to Tot-P increased across years under OF following quadratic functions with both linear and quadratic terms being statistically significant. The ratios showed little changes for the initial 15 (Tru-P) or 10 (Asc-P) years and increased rapidly thereafter. These temporal changes in Av-P were consistent with the rapid increase of the amount of P accumulated in the winter fallow weeds and incorporated in the fields after beginning of OF. These results led us to the hypothesis that the incorporation of winter weeds has contributed to the increase of Av-P in the organic fields across years. We tested this hypothesis by investigating temporal changes of Av-P after suspending the weed incorporation for 2 consecutive years in plots of the organic fields. Both Av-Ps were significantly greater in plots with continued weed incorporation (CWI) than those in plots with its suspension. We further found that the increase of Asc-P in plots with CWI was 4.9-fold the input of total P in the incorporated weeds. This suggests that the incorporation of winter fallow weeds enhanced soil-P availability beyond the supply of P accumulated in the weeds.