cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7700729.v2
title: CRISPR-Cas in aquaculture pathogens from Aquaculture as a source of empirical evidence for coevolution between CRISPR-Cas and phage.

description: Contains strain-specific information on the CRISPR-Cas content of 24 bacterial species relevant to aquaculture
DOI: 10.17632/cgw9bmc2s7
title: Data for: Optimization of five-parameter BRDF model based on Hybrid GA-PSO algorithm

description: There are 501 rows and 36 columns; each represents a wavelength; 1-501 rows correspond to the wavelength of 400-900 nm; each column corresponds to a different receiving angle. When the incident angle is different, the receiving angle of each column is different. The definition of incident angle: the angle between incident angle and plane normal. The definition of receiving angle definition: the angle between receiving angle and plane normal, if receiving angle and incident angle are on the same side of normal, then receiving angle is negative, and receiving angle and incident angle are on both sides of normal.
DOI: 10.17632/fhny7btkg7
title: Sustainability experimental

description: Pretest and posttest data of control and experimental groups.
DOI: 10.17632/j99gggz7ys
title: Data in support of "The ubiquitin conjugase Rad6 mediates ribosome pausing during oxidative stress"

description: This dataset contains source data files, raw western blot image files, and extra replicate western blot image files in support of the study to be published, "The ubiquitin conjugase Rad6 mediates ribosome pausing during oxidative stress."
DOI: 10.17632/szgrykznrm
title: Roflumilast foam 0.3% for adolescent and adult patients with seborrheic dermatitis: A phase 3 trial

description: Supplementary data to support the primary manuscript “Roflumilast foam 0.3% for adolescent and adult patients with seborrheic dermatitis: A randomized, double-blind, vehicle-controlled, phase 3 trial”
DOI: 10.25392/leicester.data.19886647.v1
title: CIC Datasets: Focus Group Transcripts

description: The Covid in Cartoons project engaged 15-18 year olds with political cartoons and cartoonists to foster processes of meaning-making in relation to the pandemic. Working with Cartooning for Peace and ShoutOut UK we engaged young people in building critical narratives of the crisis and its impact on their lives. We aimed to promote an inclusive, socially-responsive curriculum that supports young people's ability to cope in difficult circumstances. We used surveys, focus groups, and records of the participants' experiences in the form of workbooks to gather data. The project was led by Dr Fransiska Louwagie (PI) and Dr Diane Levine (Co-I), with postdoctoral associates Dr Kara Blackmore and Dr Sarah Weidman, and ran between January 2021 and July 2022. The Covid in Cartoons team carried out focus groups with participants using a 'call and response' approach. Anonymised transcripts can be found here. <br>
DOI: 10.25442/hku.24043533.v1
title: Supporting data for the "Temporal, Spatial, and Logical Modeling in Robotic Motion Planning" Ph.D. thesis

description: This zip file serves as supporting data for the "Temporal, Spatial, and Logical Modeling in Robotic Motion Planning" Ph.D. thesis. The first part is about the humanoid robot locomotion task, which is about Chapter 3 "Perceptive Motion Reference for Environmental Uncertainty". The second part is related to mobile manipulation for a static environment in the world coordinate system (Chapter 2 "Perceptive Motion Reference for Configuration Uncertainty") and movable objects in the tool coordinate system (Chapter 4 "Non-Vector Space State Representation for Task Uncertainty" and Chapter 5 "Optimal Perceptive Motion Planning in Non-Vector Space").The source code and accordingly, experimental data are included. The experimental data is plotted by the rqt_plot tool. The required software to replay the rosbag for rostopic data is ROS in Ubuntu 20.04.
DOI: 10.6084/m9.figshare.19175888.v1
title: Maize_WiDiv_SAM_1051Genotype.vcf.gz genotype file

description: The genotype dataset with 17,717,568 SNPs was used for a resampling-based genome-wide association study on 162 phenotypes from two partially overlapping maize association panels viz, SAM and WiDiv panels. SNPs were filtered to remove markers with a minor allele frequency of less than 0.01 or proportion of heterozygous SNP calls greater than 0.1 to produce the final SNP set
DOI: 10.15468/dl.ak8pf5
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Phlox multiflora A.Nelson",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 171 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013136-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/68pg6db6gh
title: Data for: An Overview of Procedures and Tools for Designing Nonstandard Beam-Based Compliant Mechanisms

description: The files in this folder are related to the paper: “An Overview of Procedures and Tools for Designing Nonstandard Beam-Based Compliant Mechanisms” Look at the paper for more details. For each of the frameworks, a dedicated sub-folder containing specific simulation files has been created. To simplify the use of the files and show their utility for the creation of automatic routines, we decided to reduce the post-processing operations and to focus mainly on the software integration. Shared data: Framework A: PRB model - Matlab Framework B: PRB model - Matlab + RecurDyn Framework C: CBCM model - Matlab Framework D: 1D FEA model - Matlab + ANSYS Framework E: 3D FEA model - Matlab + PTC Creo + RecurDyn **************************************************************** **************************************************************** The Authors Pietro Bilancia, Giovanni Berselli
DOI: 10.6084/m9.figshare.7484471.v1
title: Supplementary Material for: Preoperative Enteral Nutrition and Surgical Outcomes in Adults with Crohn’s Disease: A Systematic Review

description: <b><i>Background and Aim:</i></b> Enteral nutrition (EN) is applicable to adult Crohn’s disease (CD) in treating malnutrition and in inducing remission – here as a less effective alternative than corticosteroids. The purpose of this review is to determine whether preoperative EN impacts postoperative complications of adult CD, either by means of nutritional or therapeutic effects. <b><i>Summary:</i></b> A systematic review of English written full-text research articles published between January 1990 and November 2017, including adult patients undergoing abdominal surgery for complicated CD after EN, was performed. Four studies out of 22 were selected, all of which institutional, retrospective, case-control cohorts, one classified as “good quality” and three as “poor quality,” as rated by the Newcastle-Ottawa Scale. The application of inclusion and exclusion criteria resulted in a non-intentional absence of studies referring to supplemental EN among those reviewed. The reduced number of heterogeneous eligible studies impeded meta-analysis. In all studies, exclusive EN (EEN) was used and well tolerated, allowing to defer or even avoid surgery altogether, improving patients’ global state. The two studies with the greatest number of patients found preoperative EEN to be an independent factor against infectious and non-infectious complications in 219 patients and against anastomotic leaks or abscesses in 38 patients. Also, in univariate analysis, EEN was found to increase preop­erative immunosuppressant-free intervals and to protect against anastomotic dehiscences, intra-abdominal abscesses, surgical wound infections, ileus, stomas, and reoperations in the largest study; in another study it was related to fewer intra-abdominal septic complications. <b><i>Key Messages:</i></b> All reviewed studies are retrospective and, consequently, of limited relevance. Nonetheless, all of them call the attention of the scientific community to the potential benefits of preoperative EEN on postoperative outcomes in adult CD, calling for prospective multi-institutional studies and randomized controlled trials.
DOI: 10.17605/osf.io/5ndut
title: Stream segregation, musical abilities and the development of speech perception in noise
DOI: 10.17632/n24z7r2z28
title: Dataset for Leveraging Blockchain to Improve Automotive Supply Chain Traceability

description: The data set contains support documents and file for the project: Leveraging Blockchain to Improve Automotive Supply Chain Traceability Abstract - The automotive industry worldwide seems to be spontaneously changing with supply chain improvement being one of the main focus areas along with cost reduction, process optimization and enhancing timely throughput. The general success parameter for achieving a better output in all the said focus areas is having an effective traceability system in place. Traceability for the automotive industry is a system documenting the genealogy of parts involved in manufacturing a specific product. Even with companies having an enormous amount of capital invested for perfecting their supply chain and achieving traceability, it is seen that they still have limited visibility and insight into their supply chain at a given instance. This study aims to leverage blockchain technology to eliminate inefficiencies of the conventional automotive supply chains for increasing transparency, streamlining processes and decentralizing network while providing stakeholders and companies with a host of value-adding features that ensure smoother and faster transaction. The study demonstrates the advantages of blockchain enabled automotive supply chain. Hyperledger Composer is used for deployment of the said network.
DOI: 10.6084/m9.figshare.28238195.v1
title: Phylogenetic tree files for Renaud et al (PLOS Biology)

description: Newick files for phylogenetic trees displayed on Fig. 1A and S1 Fig. of Renaud et al (PLOS Biology).
DOI: 10.6084/m9.figshare.22047005.v1
title: Ground weather station data (precipitation)

description: Ground weather station data (precipitation).
DOI: 10.6084/m9.figshare.5127580.v1
title: Supplementary Material for: Rapid Bioassay for Detection of Thyroid-Stimulating Antibodies Using Cyclic Adenosine Monophosphate-Gated Calcium Channel and Aequorin

description: <b><i>Background:</i></b> Thyroid-stimulating antibodies (TSAb) are known to be responsible for hyperthyroidism in Graves' disease (GD). The conventional methods to measure TSAb depend on cell-based assays that require cumbersome procedures and a sterilized tissue culture technique. The aim of the present study was to develop a ready-to-use cell-based assay for measuring TSAb activity without requiring sterilized conditions. <b><i>Methods:</i></b> We developed a new assay kit using a frozen Chinese hamster ovary cell line expressing the thyroid-stimulating hormone receptor, cyclic adenosine monophosphate (cAMP)-gated calcium channel and aequorin, tentatively named the aequorin TSAb assay. Activated stimulatory G-protein-coupled adenylate cyclase increases intracellular cAMP, which then binds to the cyclic nucleotide-gated calcium channel. Activation of this channel allows Ca<sup>2+</sup> to enter the cell, and the influx of Ca<sup>2+</sup> can be measured with aequorin, which is quantified by a luminometer. Results can be obtained in only 4 h without sterilized conditions. TSAb activities were expressed by international units using the NIBSC 08/204 standard. <b><i>Results:</i></b> Positive results of aequorin TSAb were obtained in 197 of 199 (98.9%) of untreated patients with GD. Only 1 of 42 (2.3%) patients with painless thyroiditis had a weakly positive aequorin TSAb. All 45 patients with subacute thyroiditis and 185 normal subjects showed negative aequorin TSAb. As for chronic thyroiditis, all 52 euthyroid patients showed negative aequorin TSAb, but 8 of 50 (16.0%) hypothyroid patients had a positive reaction. However, these positive reactions were not induced by serum thyroid-stimulating hormone (TSH) and were thought to be induced by the stimulating activity of anti-TSH receptor immunoglobulins. Conventional porcine TSAb and Elecsys thyroid-stimulating hormone receptor antibodies were positive in 69.3 and 95.5% of GD, respectively. <b><i>Conclusion:</i></b> The aequorin TSAb assay was positive in 98.9% of GD and was more sensitive than the conventional assay. This assay can be conducted in only 4 h without sterilized conditions and is practically useful in general clinical laboratories.
DOI: 10.17632/46r9hcvpbd
title: The immune landscape of uterine leiomyosarcomas

description: Personalized immune intervention to release and redirect the T cells against a tumor has shown substantial progress in aggressive tumors such as melanoma and lung cancer, despite the fact that predictors of sustained response are still unclear. Data on less common histotypes are scanty. Among soft tissue sarcomas, uterine leiomyosarcomas (ULMS) have a dire prognosis, yet therapeutic advances are needed in order to improve the actual treatment. Immune checkpoint inhibitor therapy has been applied to exceptionally few cases, of which the immune cell composition was not examined in detail. We analyzed in situ the inflammatory infiltrate of 21 untreated ULMS in high-dimensional, single cell phenotyping on routinely processed tissue, directed at the characterization of lymphoid cells and macrophages. T-lymphoid cells displayed a composite phenotype common to all tumors, suggestive of antigen-exposure; in about half of the cases containing sufficient lymphocytes, we found evidence of exhaustion and a CD8+ TCF7+ phenotype, this latter associated with T-cell reactivation. To the contrary, myelomonocytic cells had case-specific individual combinations of phenotypes and subsets. We identified five distinct monocyte-macrophage cell types: histiocytes, phagocytes, tumor-associated macrophages, inflammatory monocytes and myelomonocytic cells of undefined phenotype. Immunosuppressive molecules (TIM3, B7H3, VISTA, PD1, PDL1) were heterogeneously expressed in inflammatory and endothelial cells. The heterogeneity and phenotype of the monocyte-macrophage population may represents a challenge for which we provide an initial understanding.
DOI: 10.17632/mpgr7x7745
title: Data for: Yield-power-law fluid propagation in water-saturated channel networks with application to rock grouting
DOI: 10.6084/m9.figshare.11873967.v7
title: CGA and Python code for procedurally modeling forest in CityEngine

description: This code reads a tree database that contains species, height, diameter, spatial contagion and outputs 3D models in CityEngine.
DOI: 10.6084/m9.figshare.27327804.v2
title: Dataset for financial inclusion and stability in Ethiopia case

description: This dataset examines financial inclusion and bank stability in Ethiopia, containing panel data from 17 commercial banks over the period 2015-2023. In 2015, there were 17 commercial banks in Ethiopia but to maintain confidentiality, the names of commercial banks have been anonymized and are referred to by generic labels: 1, 2, 3, 4..., and 17. This process allows the dataset to be analyzed and shared openly in support of reproducibility and transparency in research.<b>Variables</b><b><i>Bank Stability (ZS):</i></b> Computed using the Z-score to measure stability.<b><i>Financial Inclusion Index (IFI):</i></b> Developed using two-stage Principal Component Analysis (PCA) with 10 conventional and 5 digital indicators.<b><i>Loan to Deposit Ratio (LDR):</i></b> Computed based on the loan to deposit ratio.<b><i>Provision to Loan (PL):</i></b> Computes the loan loss provision ratio.<b><i>Natural Logarithm of Total Assets (lnTA):</i></b> Logarithmic form of total assets.<b><i>Capital Adequacy Ratio (CAR):</i></b> Computed by Tier-1 capital and Tier-2 capital divided by risk-weighted assets.<b><i>Income Diversification (IND):</i></b> Computed based on the non-interest income to total income ratio.<b><i>Operational Efficiency Management (EF):</i></b> Measured using Data Envelopment Analysis (DEA) with five input variables (salary and benefits, provisions, general expenses, branches, and deposits) and two output variables (net interest income and non-interest income).<b><i>Real Lending Interest Rate (RLIR):</i></b> Inflation-adjusted interest rate.<b><i>GDP Growth Rate (GDP):</i></b> Annual percentage change in GDP.This dataset provides comprehensive insights into the relationships between financial inclusion and bank stability, supporting future research and policy formulation.<br><br>
DOI: 10.6084/m9.figshare.28398173.v1
title: psbA alignment, treefiles, and labels

description: alignment of the final psbA tree in Calayag et al.: mafft.fram.cdhit.refs.for.cdhit.subset.ref.ref.fram.fa.fa trimmed alignment of the final psbA tree in Calayag et al.: trimal.mafft.fram.cdhit.refs.for.cdhit.subset.ref.ref.fram.fa.fatreefile of the final psbA tree in Calayag et al., including SH-aLRT support (%) and ultrafast bootstrap support (%): mfp.trimal.mafft.fram.cdhit.refs.for.cdhit.subset.ref.ref.fram.fa.fa.treefile <br>labels for loading with the tree in iTol (can be dragged directly into the iTOL interface for changing the cyanophage reference accession names to taxon names: cyanophage_labels_for_psbA_tree_for_itol.txt
DOI: 10.17632/rbgkyhf6r9
title: Improved Yolov8 neural network structure schematic diagram

description: Improved Yolov8 neural network structure schematic diagram
DOI: 10.6084/m9.figshare.19179269.v1
title: UCF101 dataset

description: UCF101 dataset
DOI: 10.17632/wzz2pvzcrz
title: Data for: Machine learning techniques for spatial interpolation of solar radiation observations

description: This is a dataset sample for the paper "Machine learning techniques for spatial interpolation of solar radiation observations". It contains data of three categories of regressors that have been used in the paper as well as Surface Solar Radiation observations for each station.
DOI: 10.6084/m9.figshare.14585853.v1
title: Transcriptome and Annotations of Gyrodinium jinhaense AVPT

description: Assembled transcriptomes for the heterotrophic dinoflagellate, <i>Gyrodinium jinhaense </i>AVPT, and their prey species, <i>Dunaliella tertiolecta</i> CCMP1320 and <i>Rhodomonas lens </i>CCMP739. <br>The prey species assemblies are named "FOOD_transcripts" and the mixed prey <i>Gyrodinium jinhaense </i>AVPT assemblies are "FULL-GYRO-ji_transcripts". <br>The files for the Transcriptome Assemblies from both rnaSPADES and Trinity platforms are located here in addition to the assemblies after the bioinformatic removal of prey (includes "no_food" in the file name) . Moreover, the EnTAP and Trinotate annotated sequence files for the GYRO-ji_trinity_no_food assembly can also be located here.<br>The SRA data can be found at NCBI under BioProject accession number PRJNA728049. <br>
DOI: 10.17632/6dfkgnh9bp
title: The PANGAEA mineralogical database

description: Future human missions to the surface of the Moon and Mars will involve scientific exploration requiring new support tools to enable rapid and high quality science decision-making. Here, we provide the PANGAEA Mineralogical Database developed by the European Space Agency:  a catalog of petrographic and spectroscopic information on all currently known minerals identified on the Moon Mars, and associated with meteorites. It also includes minerals found in the ESA PANGAEA analog sites to broaden the database coverage. The Mineralogical Database is composed primarly of the Summary Catalog of of Planetary Analog Minerals and the Spectral Archive. The Summary Catalog provides essential descriptive information for each mineral, including name (based on IMA recommendation), chemical formula, mineral group, surface abundance on planetary bodies, geological significance in the context of planetary exploration, number of collected VNIR and Raman spectra, likelihood of detection using different spectral methods, and bibliographic references evidencing their detection in extraterrestrial or terrestrial analog environments. The Spectral Archive provides a standard library for planetary in-situ human and robotic exploration covering Visual-Near-Infrared reflective (VNIR) and Raman spectroscopy (Raman). To populate this library, we collected VNIR and Raman spectra for mineral entries in the Summary Catalog from open-access archives, and analyzed them to select the best. We also supplemented this collection with our own bespoke measurements. Additionally, we compiled the chemical compositions for all minerals based on their empirical formula, to allow identification using the  measured abundances provided by LIBS and XRF analytical instruments. 
This version 2 of the PANGAEA Mineralogical Database available here in Mendeley Data is updated to the 30th of November 2022. A changelog document describe the major changes and updates in comparison with Version 1, including the full entire list of additional contributors. Any further update can be downloaded directly from the ESA webpage https://atd.eac.esa.int/sites/PANGAEAMinDB where the newest versions will be stored.
DOI: 10.6084/m9.figshare.10002038.v1
title: Anthropogenic aerosol forcing under the Shared Socioeconomic Pathways

description: Data underlying figures in "Anthropogenic aerosol forcing under the Shared Socioeconomic Pathways" by Lund, M.T., Myhre, G., Samset, B.H.
DOI: 10.6084/m9.figshare.13693708.v1
title: Coprates Chasma Dune Data Tables

description: This file contains the morphometric and thermal data relating to dune and ripples in Coprates Chasma, Mars.
DOI: 10.6084/m9.figshare.22129325.v1
title: Forest restoration challenges in Brazilian Amazonia: Data and code

description: Data and scripts necessary to reproduce the results of the paper "Forest restoration challenges in Brazilian Amazonia" available in https://doi.org/10.5281/zenodo.7658039
DOI: 10.6084/m9.figshare.22771025.v2
title: First-Generation Professionals' Mixed Methods Data

description: The dataset is a comprehensive collection of both quantitative and qualitative data that offers unique insights into the experiences of first- and continuing-generation professionals in the United States. The quantitative measures used in this study include widely used and reliable assessments of well-being (WHO-5; Topp et al., 2015), generalized anxiety disorder (GAD-7; Spitzer et al., 2006), depression (PHQ-9; Kroenke et al., 2001), performance failure appraisal (PFAI-S; Conroy et al., 2002), and standards subscale of the Short Almost Perfect Scale (SAPS; Rice et al., 2014). These assessments provide a comprehensive picture of the participants' psychological well-being in their professional careers. <br> In addition to quantitative measures, the dataset includes rich qualitative responses that provide a deeper understanding of the psychological implications of being a first-generation professional. These open-ended questions were thoughtfully constructed by the author and allow participants to provide nuanced responses. The qualitative data offers insights into how first-generation identity influences overall well-being, the experience of impostor phenomenon, and the ways participants seek support during times of professional distress and burnout. <br> The inclusion of both quantitative and qualitative data makes this dataset valuable for researchers and practitioners seeking to better understand the experiences of first- and continuing-generation professionals. The diverse range of measures used in this study provides a comprehensive view of participants' well-being, while the qualitative responses offer a rich understanding of the psychological implications of being a first-generation professional in the United States.