cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13317425
title: Resultados positivos y negativos programas EPO, ESO, INESPECÍFICOS

description: Resultados positivos y negativos programas EPO, ESO, INESPECÍFICOS
DOI: 10.6084/m9.figshare.13317425.v1
title: Resultados positivos y negativos programas EPO, ESO, INESPECÍFICOS

description: Resultados positivos y negativos programas EPO, ESO, INESPECÍFICOS
DOI: 10.6084/m9.figshare.13065986.v6
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.21227/r2qq-1051
title: Discriminative Concept Learning Network: Sample Source Code and Supplement (Project Archive)

description: Summary: The archive of DCLN project (https://sourceforge.net/projects/dcln/) is provided.Code & Script: Written in C/C++, running Shell scripts on Linux system. Mature package release v2.0 available for download. Check './dcln.sh' for usage info.Document: Details of hyperparameters tuning, data preprocessing and code compiling are given.Data: Four nonlinear simulation datasets are provided (Fig. 2 of the main paper). Each study has ~2000 training samples and ~2000 test samples.
DOI: 10.15468/ce9hnj
title: Introduction of a new generic synonymy and three newly recorded species of Nolinae (Lepidoptera: Nolidae) from India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Joshi, Rahul, Singh, Navneet, Kuni, Nikhil (2020): Introduction of a new generic synonymy and three newly recorded species of Nolinae (Lepidoptera: Nolidae) from India. Zootaxa 4890 (1): 129-134, DOI: https://doi.org/10.11646/zootaxa.4890.1.8
DOI: 10.21227/jnv1-xw02
title: Discriminative Concept Learning Network: Sample Source Code and Supplement (Project Archive)

description: Summary: The archive of DCLN project (https://sourceforge.net/projects/dcln/) is provided.Code & Script: Written in C/C++, running Shell scripts on Linux system. Mature package release v2.0 available for download. Check './dcln.sh' for usage info.Document: Details of hyperparameters tuning, data preprocessing and code compiling are given.Data: Four nonlinear simulation datasets are provided (Fig. 2 of the main paper). Each study has ~2000 training samples and ~2000 test samples.
DOI: 10.6084/m9.figshare.13317455
title: Supplementary Material for: Elevated Troponin T and Enlarged Left Atrium Are Associated with the Incidence of Atrial Fibrillation in Patients with CKD Stage 4–5

description: <b><i>Introduction:</i></b> Atrial fibrillation (AF) and CKD are commonly coexisting conditions. However, data on epidemiology of AF in patients with CKD stage 4–5 is scarce. <b><i>Methods:</i></b> We prospectively enrolled 210 consecutive non-dialysis patients with CKD stage 4–5 between 2013 and 2017. Follow-up data on AF incidence along with medical history, laboratory tests, and echocardiography at baseline were gathered. <b><i>Results:</i></b> At baseline, mean age was 62 years, estimated glomerular filtration rate 12.8 mL/min, and 73/210 (34.8%) participants were female. Altogether, 41/210 (19.5%) patients had a previous diagnosis of AF. After median follow-up of 46 [IQR 27] months, new-onset AF occurred in 33/169 (19.5%) patients (69.9 events/1,000 person-years). In the Cox proportional hazard model, age &gt;60 years (HR 4.27, CI 95% 1.57–11.64, <i>p</i> &lt; 0.01), elevated troponin T (TnT) &gt;50 ng/L (HR 3.61, CI 95% 1.55–8.37, <i>p</i> &lt; 0.01), and left atrial volume index (LAVI) &gt;30 mL/m<sup>2</sup> (HR 4.82, CI 95% 1.11–21.00, <i>p</i> = 0.04) were independently associated with the incidence of new-onset AF. <b><i>Conclusion:</i></b> The prevalence and incidence of AF was markedly high in this prospective study on patients with CKD stage 4–5. Elevated TnT and increased LAVI were independently associated with the occurrence of new-onset AF in patients with severe CKD.
DOI: 10.6084/m9.figshare.13317455.v1
title: Supplementary Material for: Elevated Troponin T and Enlarged Left Atrium Are Associated with the Incidence of Atrial Fibrillation in Patients with CKD Stage 4–5

description: <b><i>Introduction:</i></b> Atrial fibrillation (AF) and CKD are commonly coexisting conditions. However, data on epidemiology of AF in patients with CKD stage 4–5 is scarce. <b><i>Methods:</i></b> We prospectively enrolled 210 consecutive non-dialysis patients with CKD stage 4–5 between 2013 and 2017. Follow-up data on AF incidence along with medical history, laboratory tests, and echocardiography at baseline were gathered. <b><i>Results:</i></b> At baseline, mean age was 62 years, estimated glomerular filtration rate 12.8 mL/min, and 73/210 (34.8%) participants were female. Altogether, 41/210 (19.5%) patients had a previous diagnosis of AF. After median follow-up of 46 [IQR 27] months, new-onset AF occurred in 33/169 (19.5%) patients (69.9 events/1,000 person-years). In the Cox proportional hazard model, age &gt;60 years (HR 4.27, CI 95% 1.57–11.64, <i>p</i> &lt; 0.01), elevated troponin T (TnT) &gt;50 ng/L (HR 3.61, CI 95% 1.55–8.37, <i>p</i> &lt; 0.01), and left atrial volume index (LAVI) &gt;30 mL/m<sup>2</sup> (HR 4.82, CI 95% 1.11–21.00, <i>p</i> = 0.04) were independently associated with the incidence of new-onset AF. <b><i>Conclusion:</i></b> The prevalence and incidence of AF was markedly high in this prospective study on patients with CKD stage 4–5. Elevated TnT and increased LAVI were independently associated with the occurrence of new-onset AF in patients with severe CKD.
DOI: 10.15161/oar.it/73303
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.12287789
title: Can Valence and Origin of Emotional Words Trigger the Interpretation of Ambiguous Stimuli in Terms of Warmth or Competence?

description: People tend to think that emotions influence the way they think in a spectacular way. We wanted to check whether it is possible to prime the interpretations of meaning of ambiguous stimuli by presenting emotion-laden words. The effect should not be spectacular, but systematic, and thus important. Participants were presented with words differing in valence and origin of an affective state, but aligned for arousal, concreteness, length and frequency of use. Their first task was to remember a word. The second task, performed while keeping in mind the word, was trying to guess by intuition a symbol-meaning. Participants interpreted whether an object represented by a coding symbol is related to warmth or competence. We expected positive valence and automatic origin to promote interpretations in terms of warmth and reflective origin in terms of competence. Positive valence appeared to intensify interpretations in terms of both warmth and competence, while the origin effect was found to be dissociative: automatic origin promoted intensiveness of warmth assessments and reflective origin intensiveness of competence assessments. The study showed an existing relation between emotional and social aspects of the mind, and therefore supports the conclusion that both domains may result from dual processes of a more general character.
DOI: 10.6084/m9.figshare.6142820
title: Trial Survival

description: Individual wild meerkats (coded with an identifier unique to each animal) were followed over time and repeatedly captured and sampled for disease. Social groups of meerkats were allocated to one of three treatments...either the dominants in a group were vaccinated, the subordinates were vaccinated, or no animals were vaccinated. The uploaded spreadsheets were used to carry out survival analysis looking at either survival time until all-cause mortality, or time until testing positive for TB for the first time. Each individual's time in the study is broken up into sections of time divided by capture events.
DOI: 10.48370/ofd/csyvke/hpl2pz
title: 1914.jpg

description: :unav
DOI: 10.48370/ofd/csyvke
title: Jodła jednobarwna (Abies concolor (Gordon Glend.) Lindl. ex Hildebr.), 1914

description: Herbarium
DOI: 10.5880/sfb806.54
title: OSL data of the Balta Alba Kurgan loess-paleosol sequence, Romania

description: This is the DRAC file (cf. Durcan et al., 2015) used for age calculation of the optically stimulated luminescence (OSL) dating data from the Balta Alba Kurgan loess-paleosol sequence in Romania. This dataset corresponds to the luminescence age data published in Scheidt et al. (2020). The sample names in the first column are encoded as follows: Profile-number_sample-number_protocol. So for example sample BAK1_1_IR50 gives the results of conventional IRSL at 50°C measurements for sample no. 1 in profile BAK1. This sample is a fine-grained sample. Coarse-grained samples have an additional name appendix "_GK". Q stands for standard SAR quartz measurements, while pIRIR stands for the pIRIR290 protocol. For explanation on the remaining columns, the reader is reffered to the DRAC website and the corresponding publication (Durcan et al., 2015). References: Durcan, J. A., King, G. E., and Duller, G. A. T. (2015). DRAC: Dose Rate and Age Calculator for trapped charge dating. Quaternary Geochronology 28, 54–61. doi:10.1016/j.quageo.2015.03.012. Scheidt, S., Berg, S., Hambach, U., Klasen, N., Pötter, S., Stolz, A., Veres, D., Zeeden, C., Brill, D., Brückner, H., Kusch, S., Laag, C., Lehmkuhl, F., Melles, M., Monnens, F., Oppermann, L., Rethemeyer, J., and Nett, J.J. (2020). Chronological Assessment of the Balta Alba Kurgan Loess-Paleosol Section (Romania)–A Comparative Study on Different Dating Methods for a Robust and Precise Age Model. Front. Earth Sci. 8:598448. doi: 10.3389/feart.2020.598448
DOI: 10.48370/ofd/sijwra/ixu0er
title: 1928.jpg

description: :unav
DOI: 10.48370/ofd/sijwra
title: Jodła jednobarwna (Abies concolor (Gordon Glend.) Lindl. ex Hildebr.), 1928

description: Herbarium
DOI: 10.15468/cztyem
title: A new species of Aplectana Railliet & Henry (Nematoda: Cosmocercidae) in Amphisbaena alba Linnaeus (Squamata: Amphisbaenidae) from Minas Gerais State, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vieira, Fabiano Matos, Gonçalves, Paula Araujo, Lima, Sueli De Souza, Sousa, Bernadete Maria De, Muniz-Pereira, Luís Cláudio (2020): A new species of Aplectana Railliet & Henry (Nematoda: Cosmocercidae) in Amphisbaena alba Linnaeus (Squamata: Amphisbaenidae) from Minas Gerais State, Brazil. Zootaxa 4890 (2): 234-244, DOI: https://doi.org/10.11646/zootaxa.4890.2.4
DOI: 10.48370/ofd/zkvclw/d4dyqk
title: 1931.jpg

description: :unav
DOI: 10.48370/ofd/zkvclw
title: Jodła koreańska (Abies koreana E. H. Wilson.), 1931

description: Herbarium
DOI: 10.6084/m9.figshare.13065986.v7
title: Gastric cancer lymph node data set

description: This is a dataset of pathological lymph nodes for gastric cancer. It can be used to test a gastric cancer lymph node metastasis detection model proposed in "Predicting gastric cancer outcome from resected lymph node histopathology images using deep learning".<br>
DOI: 10.6084/m9.figshare.7886810
title: Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages

description: Measuring molecular evolution in bacteria typically requires estimation of the rate at which mutations accumulate in strains sampled at different times that share a common ancestor. This approach has been useful for dating ecological and evolutionary events that coincide with the emergence of important lineages, such as outbreak strains and obligate human pathogens. However, in multi-host (niche) transmission scenarios, where the pathogen is essentially an opportunistic environmental organism, sampling is often sporadic and rarely reflects the overall population, particularly when concentrated on clinical isolates. This means that approaches that assume recent common ancestry are not applicable. Here we present a new approach to estimate the molecular clock rate in <i>Campylobacter </i>that draws on the popular probability conundrum known as the ‘birthday problem’. Using large genomic datasets and comparative genomic approaches, we identify isolate pairs where common ancestry is inferred within the sample time-frame – analogous to a shared birthday. Identifying synonymous and non-synonymous substitutions, both within and outside of recombinant regions of the genome, we quantify clock-like diversification to estimate mutation rates for the common pathogenic species <i>Campylobacter coli </i>(2.4 x 10<sup>-6</sup> s/s/y) and<i> Campylobacter jejuni</i> (3.4 x 10<sup>-6</sup> s/s/y). Finally, using estimated mutation rates we assess the rate of turnover of lineages in our sample set over short evolutionary timescales. This provides a generalisable approach to calibrating mutation rates in populations of environmental bacteria and shows that multiple lineages are maintained, implying that large-scale clonal sweeps may take hundreds of years or more in these species.
DOI: 10.6084/m9.figshare.7886810.v3
title: Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages

description: Measuring molecular evolution in bacteria typically requires estimation of the rate at which mutations accumulate in strains sampled at different times that share a common ancestor. This approach has been useful for dating ecological and evolutionary events that coincide with the emergence of important lineages, such as outbreak strains and obligate human pathogens. However, in multi-host (niche) transmission scenarios, where the pathogen is essentially an opportunistic environmental organism, sampling is often sporadic and rarely reflects the overall population, particularly when concentrated on clinical isolates. This means that approaches that assume recent common ancestry are not applicable. Here we present a new approach to estimate the molecular clock rate in <i>Campylobacter </i>that draws on the popular probability conundrum known as the ‘birthday problem’. Using large genomic datasets and comparative genomic approaches, we identify isolate pairs where common ancestry is inferred within the sample time-frame – analogous to a shared birthday. Identifying synonymous and non-synonymous substitutions, both within and outside of recombinant regions of the genome, we quantify clock-like diversification to estimate mutation rates for the common pathogenic species <i>Campylobacter coli </i>(2.4 x 10<sup>-6</sup> s/s/y) and<i> Campylobacter jejuni</i> (3.4 x 10<sup>-6</sup> s/s/y). Finally, using estimated mutation rates we assess the rate of turnover of lineages in our sample set over short evolutionary timescales. This provides a generalisable approach to calibrating mutation rates in populations of environmental bacteria and shows that multiple lineages are maintained, implying that large-scale clonal sweeps may take hundreds of years or more in these species.
DOI: 10.6084/m9.figshare.7886810.v2
title: Quantifying bacterial evolution in the wild: a birthday problem for Campylobacter lineages

description: Measuring molecular evolution in bacteria typically requires estimation of the rate at which mutations accumulate in strains sampled at different times that share a common ancestor. This approach has been useful for dating ecological and evolutionary events that coincide with the emergence of important lineages, such as outbreak strains and obligate human pathogens. However, in multi-host (niche) transmission scenarios, where the pathogen is essentially an opportunistic environmental organism, sampling is often sporadic and rarely reflects the overall population, particularly when concentrated on clinical isolates. This means that approaches that assume recent common ancestry are not applicable. Here we present a new approach to estimate the molecular clock rate in <i>Campylobacter </i>that draws on the popular probability conundrum known as the ‘birthday problem’. Using large genomic datasets and comparative genomic approaches, we identify isolate pairs where common ancestry is inferred within the sample time-frame – analogous to a shared birthday. Identifying synonymous and non-synonymous substitutions, both within and outside of recombinant regions of the genome, we quantify clock-like diversification to estimate mutation rates for the common pathogenic species <i>Campylobacter coli </i>(2.4 x 10<sup>-6</sup> s/s/y) and<i> Campylobacter jejuni</i> (3.4 x 10<sup>-6</sup> s/s/y). Finally, using estimated mutation rates we assess the rate of turnover of lineages in our sample set over short evolutionary timescales. This provides a generalisable approach to calibrating mutation rates in populations of environmental bacteria and shows that multiple lineages are maintained, implying that large-scale clonal sweeps may take hundreds of years or more in these species.
DOI: 10.15468/zjzjtd
title: Neoclypeodytes Young from Panama, with description of two new species (Coleoptera: Dytiscidae: Hydroporinae: Bidessini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Scheers, Kevin, Hájek, Jiří (2020): Neoclypeodytes Young from Panama, with description of two new species (Coleoptera: Dytiscidae: Hydroporinae: Bidessini). Zootaxa 4890 (2): 245-256, DOI: https://doi.org/10.11646/zootaxa.4890.2.5
DOI: 10.48370/ofd/btuenn/vhebhl
title: 1910.jpg

description: :unav
DOI: 10.48370/ofd/btuenn
title: Jodła koreańska (Abies koreana E.H. Wilson), 1910

description: Herbarium
DOI: 10.48370/ofd/ehhja0/kuzw9u
title: 1933.jpg

description: :unav
DOI: 10.48370/ofd/ehhja0
title: Jodła nikkońska (Abies homolepis Siebold Zucc.), 1933

description: Herbarium
DOI: 10.24377/ljmu.d.00000086
title: Evaluation of fitness instructors’ beliefs about using anti-doping education tools for recreational sports

description: Use of performance and image enhancement drugs (PIEDs) in recreational sport is a common practice and there is a need to develop preventive interventions. The aim of the study was to investigate the acceptability and usability of an online e-learning course and an information app that were designed to support PIED prevention training activities in professionals working with recreational athletes. Fifty-one professionals from three countries (Finland, Greece, and Lithuania) participated in the evaluation of the e-learning course, and 19 professionals from Greece were recruited to evaluate the information app. Participants completed surveys and/or participated in semi-structured interviews measuring acceptability, usability and implementation of both educational tools. Τhe results of the analyses showed that both the e-learning course and the app increased participants’ knowledge on PIEDs risks and adverse effects, understanding of the motives for PIED use, competence and confidence when interacting with clients who may use PIEDs and assisting them to quit PIED use without moralizing. The e-learning course was also perceived as compatible with existing practices, and individual and organisational values of prevention and harm reduction. Lack of time was perceived as the main barrier to using both tools. Nevertheless, participants reported that using the tools would improve their competencies in aiming to prevent PIED use. The present study provides valuable information on the acceptability and usability of two educational approaches against doping and highlights the need to further investigate the effectiveness of PIED interventions.
description: Online questionnaire surveys of convenience samples recruited through professional networks in Greece, Finland, Lithuania
DOI: 10.6084/m9.figshare.13162796
title: nnmd.csv

description: NNMD values for each cell line and each of the 12 integrated datasets. NNMD is a measure of screen quality.
DOI: 10.6084/m9.figshare.13162796.v2
title: nnmd.csv

description: NNMD values for each cell line and each of the 12 integrated datasets. NNMD is a measure of screen quality.
DOI: 10.6084/m9.figshare.13162796.v1
title: nnmd.csv

description: NNMD values for each cell line and each of the 12 integrated datasets. NNMD is a measure of screen quality.
DOI: 10.48370/ofd/7u23fo/y6pk1i
title: 0547.jpg

description: :unav
DOI: 10.48370/ofd/7u23fo
title: Jodła pospolita (Abies alba Mill.), 547

description: Herbarium
DOI: 10.6084/m9.figshare.13317542
title: Supplementary Material for: Antimitochondrial Rather than Antinuclear Antibodies Correlate with Severe Drug-Induced Liver Injury

description: <b><i>Introduction:</i></b> A proportion of patients with drug-induced liver injury (DILI) present with autoantibodies, which has led to the current concept of autoimmune-like DILI. However, no standardized definition exists and the clinical relevance has not been studied in detail yet. <b><i>Methods:</i></b> 143 patients with DILI enrolled in a prospective study were analyzed. DILI diagnosis was based on the monocyte-derived hepatocyte-like cell test and supported by Roussel Uclaf Causality Assessment Method (RUCAM) and expert adjudication. Testing for antinuclear antibodies (ANA) and antimitochondrial antibodies (AMA) was performed using immunofluorescence. ANA titers ≥1:100 were considered positive and ≥1:400 clinically relevant; AMA positivity was considered at titers ≥1:100. <b><i>Results:</i></b> 67% exhibited ANA ≥1:100 and 29% ANA ≥1:400; 10% were AMA positive. There was no significant correlation between the ANA titers and the causative drug, while AMA positive patients had taken nonsteroidal anti-inflammatory drugs more frequently. No difference was seen regarding clinical characteristics or laboratory parameters in patients with ANA ≥1:400, while patients with positive AMA presented with higher aminotransferases, bilirubin, and international normalized ratio. Significantly higher proportions of patients with ANA ≥1:400 or AMA positivity exhibited elevated immunoglobulin G levels. AMA positivity but not elevated ANA titers correlated with a higher proportion of Hy’s law positivity. <b><i>Conclusion:</i></b> A closer look in a causality proven DILI cohort provided no evidence that presence of ANA titers is specific for DILI by a certain medication. AMA rather than ANA positivity was related to a more pronounced liver injury.