cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/a84f4096a5793427f7f9c671e0496285
title: Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) from river, lagoon, and open ocean sites along the Alaska Beaufort Sea coast, 2018-ongoing

description: Multiple water types (river, lagoon, ocean) from the North Slope of Alaska and nearshore Beaufort Sea are sampled seasonally by the Beaufort Lagoon Ecosystems LTER (BLE LTER) Core Program to investigate biogeochemical linkages between terrestrial, lagoon, and open ocean ecosystems. Water samples are collected during full ice cover (April), ice break-up (mid-June to early July), and open water (late July and August) periods and analyzed for dissolved organic carbon and total dissolved nitrogen content.
DOI: 10.5281/zenodo.6681602
title: Case Management Practices to Solve Problems and Fulfill Clients Needs at Bogor Correctional Hall

description: The correctional system in Indonesia aims to expedite an integration process between correctional citizens and societies. It is a must that correctional clients have prepared well enough so they can adapt to the social life with the knowledge and ability that they got from correctional programs. Correctional guides play an important role to make sure some of the correctional system goals succeeded such as assisting the client and preparing them to understand what might be right to do after their sentences are done. One of the practices, that correctional guides must do is case management which they become case managers for many clients. These practices are done to ensure their ability to solve problems and fulfill clients’ needs. The researchers used the qualitative method by interviewing correctional guides and clients in order to receive thorough information about the condition of works at Bogor Correctional Hall. Researchers also gather information from official reports, news media, and other literacy as secondary data. The findings are that correctional guides implement case management practices and play an important role as an advocate to solve clients’ problems. On the other hand, correctional guides find there are also obstacles. To summarize the research, correctional guides have implemented case management practices to solve problems and fulfill clients’ needs.
DOI: 10.5281/zenodo.6681601
title: Case Management Practices to Solve Problems and Fulfill Clients Needs at Bogor Correctional Hall

description: The correctional system in Indonesia aims to expedite an integration process between correctional citizens and societies. It is a must that correctional clients have prepared well enough so they can adapt to the social life with the knowledge and ability that they got from correctional programs. Correctional guides play an important role to make sure some of the correctional system goals succeeded such as assisting the client and preparing them to understand what might be right to do after their sentences are done. One of the practices, that correctional guides must do is case management which they become case managers for many clients. These practices are done to ensure their ability to solve problems and fulfill clients’ needs. The researchers used the qualitative method by interviewing correctional guides and clients in order to receive thorough information about the condition of works at Bogor Correctional Hall. Researchers also gather information from official reports, news media, and other literacy as secondary data. The findings are that correctional guides implement case management practices and play an important role as an advocate to solve clients’ problems. On the other hand, correctional guides find there are also obstacles. To summarize the research, correctional guides have implemented case management practices to solve problems and fulfill clients’ needs.
DOI: 10.6084/m9.figshare.20071127.v1
title: JGR_WozniakowskaEaton2022_Data

description: Earthquake catalogs and well dataset used in the study described in the article "SimSeis – statistical tool for investigation of induced seismicity distributions"
DOI: 10.6084/m9.figshare.20071127
title: JGR_WozniakowskaEaton2022_Data

description: Earthquake catalogs and well dataset used in the study described in the article "SimSeis – statistical tool for investigation of induced seismicity distributions"
DOI: 10.6084/m9.figshare.20071127.v3
title: JGR_WozniakowskaEaton2022_Data

description: Earthquake catalogs and well dataset used in the study described in the article "SimSeis – statistical tool for investigation of induced seismicity distributions"
DOI: 10.6084/m9.figshare.20071127.v2
title: JGR_WozniakowskaEaton2022_Data

description: Earthquake catalogs and well dataset used in the study described in the article "SimSeis – statistical tool for investigation of induced seismicity distributions"
DOI: 10.5281/zenodo.6682066
title: Riset dan PKM 2021

description: Laporan Riset dan Pengabdian Kepada Masyarakat Tahun 2021
DOI: 10.5281/zenodo.6682065
title: Riset dan PKM 2021

description: Laporan Riset dan Pengabdian Kepada Masyarakat Tahun 2021
DOI: 10.34740/kaggle/dsv/3844348
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.19920434
title: Supplementary Material for: EMT-Related Gene Signature: A New Method for Personalized Risk Assessment in Patients with Hepatocellular Carcinoma

description: Background: Hepatocellular carcinoma (HCC) is the fourth-leading cause of cancer-related death worldwide, accounting for more than 700,000 deaths annually. Epithelial–mesenchymal transition (EMT) is posited to contribute to HCC progression. We therefore aimed to elucidate the relationship between EMT-related gene (ERG) expression and prognosis in patients with HCC. Methods: Univariate and multivariate Cox regression analyses were performed to identify prognostic-related differentially expressed EMT-related genes (DE-ERGs). Time‑dependent receiver operating characteristic (ROC) and Kaplan–Meier curves were used to assess the prognostic performance of the EMT-related signature. pRRophetic R package was used to evaluate sorafenib sensitivity in the GSE14520 cohort. Gene expression in Huh7 and L02 cell lines was detected by real-time PCR and western blotting. Differential expression of the three genes between HCC tissues and normal tissues was validated using immunohistochemical analyses. Results: Of the 76 identified DE-ERGs, 29 were associated with overall survival. Three prognosis-related ERGs (GOLM1, SOX4 and CD14) were screened out by multivariate Cox regression. A gene signature was identified based on the three prognostic related ERGs. HCC patients with a low-risk score had a better prognosis and were more sensitive to sorafenib compared to those with a high-risk score. Moreover, we further confirmed increased expression of GOLM1 and SOX4, and decreased expression of CD14, in liver cancer cell line and HCC tissue. Conclusions: The results of the present study demonstrate the utility of an EMT-related gene signature as a potential biomarker informing prognosis in patients with HCC, which may contribute to the implementation of personalized therapies.
DOI: 10.5281/zenodo.6682134
title: Annexe — Les carnets d'accompagnement des revues sur Hypotheses.org : Rapports de complémentarité et logiques éditoriales

description: Annexe: tableau de récolement listant les carnets de revue appartenant au corpus de la communication présentée le 23 juin 2022 à la 8e conférence docsoc "Document numérique et société", et précisant l'inscription des revues associées dans l'écosystème de la communication scientifique.
DOI: 10.5281/zenodo.6682133
title: Annexe — Les carnets d'accompagnement des revues sur Hypotheses.org : Rapports de complémentarité et logiques éditoriales

description: Annexe: tableau de récolement listant les carnets de revue appartenant au corpus de la communication présentée le 23 juin 2022 à la 8e conférence docsoc "Document numérique et société", et précisant l'inscription des revues associées dans l'écosystème de la communication scientifique.
DOI: 10.6084/m9.figshare.19849456
title: Supplementary Material for: sFlt-1/PlGF ratio at 24 weeks gestation in twin pregnancies as a predictor of preeclampsia or fetal growth restriction

description: Objective: to elucidate if sFlt-1/PlGF ratio at 24 weeks in twin pregnancies could be useful to select patients who subsequently develop diseases related to placental dysfunction, such as preeclampsia or fetal growth restriction (FGR). Methods: prospective study among all twin pregnancies followed up at a tertiary Hospital. The sFlt-1/PlGF ratio was determined at 24 weeks. Results: a total of 108 patients with a twin gestation were included. Pregnant women who developed preeclampsia and/or FGR displayed a significantly higher sFlt-1/PlGF ratio at 24 weeks, compared to those who did not develop these diseases (20.3 vs 4.3, p=0.002). Mean sFlt-1/PlGF ratio was not significantly different between patients who subsequently developed preeclampsia compared with those that developed FGR (29.8 vs 18.45, p=0.42). An sFlt-1/PlGF ratio ≥17 at 24 weeks is associated with a significant increase in the frequency of preeclampsia (odds ratio, 37.13 [95% confidence interval, 4.78–288.25]; p=0.002), and FGR (odds ratio, 39.58 [95% confidence interval, 6.31–248.17]; p&lt;0.001). The addition of maternal characteristics, and mean pulsatility index of the uterine arteries to the sFlt-1/PlGF ratio at 24 weeks enhance the identification of patients who develop preeclampsia or FGR. Conclusion: sFlt-1/PlGF ratio at 24 weeks in twin pregnancies, combined with mean pulsatility index of the uterine arteries and maternal characteristics, could select patients who develop preeclampsia or FGR. These patients might benefit from a close follow-up in order to avoid maternal-fetal adverse outcomes.
DOI: 10.48610/436c5fb
title: Paper Miner: Geo-Temporal Indexes for Australian Newspapers Online

description: This resource consists of a) the full text in uncorrected ASCII format of the corpus of Australian Newspapers offered online by the Australia National Library and b) indexes of entities appearing in the corpus with mark up enabling their geo-temporal visualisation and the place of publication of newspapers in which reference to the entities appears.
DOI: 10.17608/k6.auckland.20113922.v1
title: Antibacterial activity of extracts from Aspergillus terreus ICMP 477 against Escherichia coli and Staphylococcus aureus

description: ICMP 477 was isolated in September 1961 in Auckland, Aotearoa New Zealand, from sheep’s wool incubated at 30 °C. The identification of this culture as <em>Aspergillus terreus</em> is supported by GenBank sequence MW862777. Cultures of ICMP 477 were grown at room temperature on Potato Dextrose Agar (PDA). <br> 40 PDA plates were inoculated with ICMP 477 and incubated at room temperature for 3 weeks. Fully grown fungal plates were freeze-dried (26.57 g, dry weight) and extracted with MeOH (2 × 500 mL) for 4 h followed CH<sub>2</sub>Cl<sub>2</sub> (2 × 500 mL) overnight. Combined organic extracts were concentrated under reduced pressure to afford an orange oil (2.45 g). The crude product was subjected to C8 reversed-phase column chromatography eluting with a gradient of H2O/MeOH to give five fractions (F1–F5). <br> Dry samples of extracts were dissolved in DMSO (Sigma-Aldrich, St. Louis, MO, USA) to make a 25 mg/mL solution and then further diluted into Mueller Hinton broth II (MHB) (Fort Richard, Auckland, New Zealand) to achieve a maximum concentration of 2 mg/mL. Each extract (200 µL) was added to two adjacent wells along the top of the 96-well plate (Thermo Fisher, NUN167008, Waltham, MA, USA). MHB (100 µL) was then added to the remaining wells and extract solution (100 µL) serially diluted two-fold down the plate and discarded. Aliquots of bioluminescent derivatives of <em>S. aureus</em> (Xen 36 (PerkinElmer Inc., MA, USA)) and <em>E. coli</em> (25922 lux), at an optical density at 600 nm of 0.01 (approximately 1 × 10<sup>6</sup> colony forming units (CFU)/mL) were then added to all the wells. This gave a maximum concentration of 1 mg/mL and a minimum concentration of 16 µg/mL. The maximum volume/volume concentration of DMSO in all extracts was 4%; therefore, the negative control was tested at an identical concentration. <br> Luminescence was measured using a Victor X-3 luminescence plate reader (PerkinElmer Inc., MA, USA) with an integration time of 1s at 0, 2, 4 and 24 h to determine the minimum inhibitory concentration (MIC), between which times the plates were incubated at 37 °C with shaking at 100 rpm. MIC was defined as causing a 1 log reduction in bacterial light production. <br> Data is provided as Area Under Curve (AUC) of luminescence readings for extracts and controls and corresponding log reduction in AUC comparing extracts and controls. Experiments were performed with two technical replicates of one biological replicate of each testing bacterium.
DOI: 10.17608/k6.auckland.20113922
title: Antibacterial activity of extracts from Aspergillus terreus ICMP 477 against Escherichia coli and Staphylococcus aureus

description: ICMP 477 was isolated in September 1961 in Auckland, Aotearoa New Zealand, from sheep’s wool incubated at 30 °C. The identification of this culture as <em>Aspergillus terreus</em> is supported by GenBank sequence MW862777. Cultures of ICMP 477 were grown at room temperature on Potato Dextrose Agar (PDA). <br> 40 PDA plates were inoculated with ICMP 477 and incubated at room temperature for 3 weeks. Fully grown fungal plates were freeze-dried (26.57 g, dry weight) and extracted with MeOH (2 × 500 mL) for 4 h followed CH<sub>2</sub>Cl<sub>2</sub> (2 × 500 mL) overnight. Combined organic extracts were concentrated under reduced pressure to afford an orange oil (2.45 g). The crude product was subjected to C8 reversed-phase column chromatography eluting with a gradient of H2O/MeOH to give five fractions (F1–F5). <br> Dry samples of extracts were dissolved in DMSO (Sigma-Aldrich, St. Louis, MO, USA) to make a 25 mg/mL solution and then further diluted into Mueller Hinton broth II (MHB) (Fort Richard, Auckland, New Zealand) to achieve a maximum concentration of 2 mg/mL. Each extract (200 µL) was added to two adjacent wells along the top of the 96-well plate (Thermo Fisher, NUN167008, Waltham, MA, USA). MHB (100 µL) was then added to the remaining wells and extract solution (100 µL) serially diluted two-fold down the plate and discarded. Aliquots of bioluminescent derivatives of <em>S. aureus</em> (Xen 36 (PerkinElmer Inc., MA, USA)) and <em>E. coli</em> (25922 lux), at an optical density at 600 nm of 0.01 (approximately 1 × 10<sup>6</sup> colony forming units (CFU)/mL) were then added to all the wells. This gave a maximum concentration of 1 mg/mL and a minimum concentration of 16 µg/mL. The maximum volume/volume concentration of DMSO in all extracts was 4%; therefore, the negative control was tested at an identical concentration. <br> Luminescence was measured using a Victor X-3 luminescence plate reader (PerkinElmer Inc., MA, USA) with an integration time of 1s at 0, 2, 4 and 24 h to determine the minimum inhibitory concentration (MIC), between which times the plates were incubated at 37 °C with shaking at 100 rpm. MIC was defined as causing a 1 log reduction in bacterial light production. <br> Data is provided as Area Under Curve (AUC) of luminescence readings for extracts and controls and corresponding log reduction in AUC comparing extracts and controls. Experiments were performed with two technical replicates of one biological replicate of each testing bacterium.
DOI: 10.48610/eae1876
title: Plant Genomics Sequence Data. Transcriptome, amplicon and genomics data generated for various plant species using next generation sequencing

description: This data is an important collection of genetic data for various plant species. The data provides an important insight on the genes and also and various snapshots of how genes behave. This data is crucial for our group but also other groups to be used for research purpose on conservation, phylogeny, and identification of crucial genes for use in plant breeding. Present as work or Excel files or stated in peer reviewed publications.
DOI: 10.48610/22fe37b
title: Blast Formatted NGS Data for TAGdb

description: The collection is currently having Barley, Brassica, Diplotaxis, Hirschfeldia, Lotus, Nicotiana, Pongamia, Rye, Sinapis, Teraselmis and Wheat NGS data.
DOI: 10.48610/4dd8da9
title: Chickpea Gbrowse data

description: Chickpea NGS data and genomic features for the Chickpea Gbrowse
DOI: 10.48610/0b789f8
title: Weather Model Output

description: This data encompasses two years' worth of wind speed and direction data for 35 domains within Australia. The weather model data is used to create input to economic models that predict wind energy contributions to Australia's renewable energy targets.
DOI: 10.48610/3ea6169
title: Vector Biology

description: Mosquito genome, transcriptome information, population genetic data storage.
DOI: 10.48610/9844278
title: Centre for the Government of Queensland Datasets

description: These datasets have been used to generate five websites, including the Queensland Historical Atlas (www.qhatlas.com.au), Queensland Places (queenslandplaces.com.au), Queensland Speaks (www.queenslandspeaks.com.au),Text Queensland (www.textQueensland.com.au) and Victorian Places (www.victorianplaces.com.au).
DOI: 10.18112/openneuro.ds004169.v1.0.0
title: Queensland Twin IMaging (QTIM)
DOI: 10.48610/e607da2
title: Riginos Laboratory NGS Datasets

description: The datasets comprise next generation sequences based both on transcriptomes (RNA) and genotyping by sequencing methods (RAD: restriction site associated DNA markers).
DOI: 10.48610/c4e089d
title: Data from the Ortiz-Barrientos Laboratory (University of Queensland)

description: In the Ortiz-Barrientos Lab in the School of Biological Sciences, they study the genetics of speciation and adaptation. They are developing a new system of study to answer questions on the replicated evolution of traits and reproductive isolation, the early stages of speciation and the origin of ecotypes, the molecular causes of reproductive isolation and adaptation, and the quantitative genetics of ecologically important traits and fitness. Funded by the ARC, the lab uses a combination of both field and molecular work to address the genetic basis of speciation, adaptation and parallel evolution. For further detail, please see the website: http://www.ortizbarrientoslab.me/.
DOI: 10.48610/a97b567
title: Plant Genomics Sequence Data. Transcriptome, amplicon and genomics data generated for various plant species using next generation sequencing: Archive

description: This data is an important collection of genetic data for various plant species. The data provides an important insight on the genes and also and various snapshots of how genes behave. This data is crucial for our group but also other groups to be used for research purpose on conservation, phylogeny, and identification of crucial genes for use in plant breeding. Present as work or Excel files or stated in peer reviewed publications.
DOI: 10.48610/722df51
title: UQ Quantum Technology Lab Data Store

description: The UQ Quantum Technology Lab, a member of the two ARC Centers of Excellence (EQuS [Engineered Quantum Systems] and CQC2T ([Centre for Quantum Computation and Communication Technology], is run by Prof. Andrew G. White. We're working on fundamental experiments of quantum physics with photons as well as establishing new single photon sources. The data will usually come with a documented matlab or mathematica file for post-processing.
DOI: 10.48610/d91034d
title: Northern Genomes dataset

description: This data collection supports research within the QAAFI Centre of Animal Science. The research aims to enhance the productivity and sustainability of beef production in Northern Australia though a variety of tools and techniques. The primary use of the collection is for the storage and analysis of genomic datasets.
DOI: 10.34808/0sbv-b438
title: T lymphoblastic leukemia/lymphoma - Male, 17 - Tissue image [6220730015173081]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 17Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: LYMPHOID LEUKEMIAS (C42.1)Diagnosis: T lymphoblastic leukemia/lymphomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 5Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/9ax8-hy72
title: Rhabdomyosarcoma, NOS - Female, 8 - Tissue image [6220730015163691]

description: This is the histopathological image of RETROPERITONEUM AND PERITONEUM tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 8Clinical description: Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: MYOMATOUS NEOPLASMSDiagnosis: Rhabdomyosarcoma, NOSResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: RETROPERITONEUM AND PERITONEUMOrgan: RETROPERITONEUM AND PERITONEUMTissue: Pelvic peritoneumType of staining: positive/IHCStaining: Not applicableAntibody: Ki-67Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.48610/eacd6ba
title: UQ-ATB file repository

description: The ATB database includes optimized geometries and atomic interaction parameters for over 180,000 molecules along and has over 6500 registered users worldwide. The data is accessed by hundreds or researchers daily. The requested resources will be used primarily to generate, store and serve molecular fragments which are used to enable the rapid identification and parametrization of novel molecules submitted to the main ATB web site.
DOI: 10.34808/gvr1-8k17
title: T lymphoblastic leukemia/lymphoma - Male, 17 - Tissue image [622073001517911]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 17Clinical description: Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: LYMPHOID LEUKEMIAS (C42.1)Diagnosis: T lymphoblastic leukemia/lymphomaResult of the histopathological examination: Sample:Material: FFPECollecting method: Surgical specimenTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Supraclavicular lymph nodeType of staining: positive/IHCStaining: Not applicableAntibody: CD 4Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk