cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8114114.v1
title: Pathogenic allodiploid hybrids of Aspergillus fungi

description: Data for the publication, Pathogenic allodiploid hybrids of <i>Aspergillus </i>fungi by Steenwyk and Lind et al, 2020<br><br>Summary<br>Interspecific hybridization substantially alters genotypes and phenotypes and can give rise to new lineages. Hybrid isolates that differ from their parental species in infection-relevant traits have been observed in several human-pathogenic yeasts and plant-pathogenic filamentous fungi but have yet to be found in human-pathogenic filamentous fungi. We discovered 6 clinical isolates from patients with aspergillosis originally identified as Aspergillus nidulans (section Nidulantes) that are actually allodiploid hybrids formed by the fusion of Aspergillus spinulosporus with an unknown close relative of Aspergillus quadrilineatus, both in section Nidulantes. Evolutionary genomic analyses revealed that these isolates belong to Aspergillus latus, an allodiploid hybrid species. Characterization of diverse infection-relevant traits further showed that A. latus hybrid isolates are genomically and phenotypically heterogeneous but also differ from A. nidulans, A. spinulosporus, and A. quadrilineatus. These results suggest that allodiploid hybridization contributes to the genomic and phenotypic diversity of filamentous fungal pathogens of humans.<br>
DOI: 10.6084/m9.figshare.8114006
title: MOESM9 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 9. Fasta file of all sequences from the AOx cluster.
DOI: 10.6084/m9.figshare.8114006.v1
title: MOESM9 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 9. Fasta file of all sequences from the AOx cluster.
DOI: 10.6084/m9.figshare.8114000
title: MOESM8 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 8. Fasta file of all sequences from the AAOâ PDH cluster.
DOI: 10.6084/m9.figshare.8114000.v1
title: MOESM8 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 8. Fasta file of all sequences from the AAOâ PDH cluster.
DOI: 10.6084/m9.figshare.8113952
title: MOESM17 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 17. Newick file of maximum likelihood tree of the POx cluster.
DOI: 10.6084/m9.figshare.8113952.v1
title: MOESM17 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 17. Newick file of maximum likelihood tree of the POx cluster.
DOI: 10.6084/m9.figshare.8113946
title: MOESM16 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 16. Newick file of maximum likelihood tree of the GOx-GDH cluster.
DOI: 10.6084/m9.figshare.8113946.v1
title: MOESM16 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 16. Newick file of maximum likelihood tree of the GOx-GDH cluster.
DOI: 10.6084/m9.figshare.8113940
title: MOESM15 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 15. Newick file of maximum likelihood tree of the CDH cluster.
DOI: 10.6084/m9.figshare.8113940.v1
title: MOESM15 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 15. Newick file of maximum likelihood tree of the CDH cluster.
DOI: 10.6084/m9.figshare.8113931
title: MOESM14 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 14. Newick file of maximum likelihood tree of the AOx cluster.
DOI: 10.6084/m9.figshare.8113931.v1
title: MOESM14 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 14. Newick file of maximum likelihood tree of the AOx cluster.
DOI: 10.6084/m9.figshare.8113925
title: MOESM3 of Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle

description: Additional file 3: Tables S3. Enrichment estimated in 100 bootstraps when variants are classified into five categories. Tables S4. Lead SNPs from genome-wide associated regions for stature in Nordic Holstein cattle. Base positions are given according to UMD 3.1.1. Tables S5. Enrichment estimated in 100 bootstraps when variants are classified into eight categories.
DOI: 10.6084/m9.figshare.8113925.v1
title: MOESM3 of Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle

description: Additional file 3: Tables S3. Enrichment estimated in 100 bootstraps when variants are classified into five categories. Tables S4. Lead SNPs from genome-wide associated regions for stature in Nordic Holstein cattle. Base positions are given according to UMD 3.1.1. Tables S5. Enrichment estimated in 100 bootstraps when variants are classified into eight categories.
DOI: 10.6084/m9.figshare.8113922
title: MOESM13 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 13. Newick file of maximum likelihood tree of the AAO–PDH cluster.
DOI: 10.6084/m9.figshare.8113922.v1
title: MOESM13 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 13. Newick file of maximum likelihood tree of the AAO–PDH cluster.
DOI: 10.6084/m9.figshare.8113916
title: MOESM12 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 12. Fasta file of all sequences from the POx cluster.
DOI: 10.6084/m9.figshare.8113916.v1
title: MOESM12 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 12. Fasta file of all sequences from the POx cluster.
DOI: 10.6084/m9.figshare.8113910
title: MOESM11 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 11. Fasta file of all sequences from the GOx-GDH cluster.
DOI: 10.6084/m9.figshare.8113910.v1
title: MOESM11 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 11. Fasta file of all sequences from the GOx-GDH cluster.
DOI: 10.6084/m9.figshare.8113907
title: Additional file 9: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S3. Genes mapped in the chromosome which are involved in atleast 7 of 9 studies. Arabidopsis ortholog, description and corresponding gene IDs were indicated. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8113907.v1
title: Additional file 9: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S3. Genes mapped in the chromosome which are involved in atleast 7 of 9 studies. Arabidopsis ortholog, description and corresponding gene IDs were indicated. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8113904
title: MOESM10 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 10. Fasta file of all sequences from the CDH cluster.
DOI: 10.6084/m9.figshare.8113904.v1
title: MOESM10 of The GMC superfamily of oxidoreductases revisited: analysis and evolution of fungal GMC oxidoreductases

description: Additional file 10. Fasta file of all sequences from the CDH cluster.
DOI: 10.6084/m9.figshare.8113895
title: Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress response and hormone metabolism. Arabidopsis ortholog, description and corresponding gene IDs were indicated. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8113895.v1
title: Additional file 7: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S2. Genes mapped in the chromosome which are involved in transcription factors, abiotic stress response and hormone metabolism. Arabidopsis ortholog, description and corresponding gene IDs were indicated. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8113865
title: Additional file 1: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S1. The table consists of gene_ID, corresponding arabidopsis orthologs and log2 fold change values for significantly regulatedÂ genes (FDRâ
DOI: 10.6084/m9.figshare.8113865.v1
title: Additional file 1: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S1. The table consists of gene_ID, corresponding arabidopsis orthologs and log2 fold change values for significantly regulatedÂ genes (FDRâ
DOI: 10.6084/m9.figshare.8113862
title: Additional file 12: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S5. Genes involved in drought response at different leaf developmental stages (unique for seedling, unique for mature and common for seedling and mature) were shown. TAIR ID, log2FC and expression pattern were indicated. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8113862.v1
title: Additional file 12: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S5. Genes involved in drought response at different leaf developmental stages (unique for seedling, unique for mature and common for seedling and mature) were shown. TAIR ID, log2FC and expression pattern were indicated. (XLSX 56 kb)
DOI: 10.6084/m9.figshare.8113853
title: Additional file 11: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S6. Genes involved in drought response corresponding to each of the study were shown. TAIR ID, description and log2FC were indicated. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.8113853.v1
title: Additional file 11: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S6. Genes involved in drought response corresponding to each of the study were shown. TAIR ID, description and log2FC were indicated. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.8113847
title: Additional file 10: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S4. Genes involved in the leaf developmental stage that are commonly drought-regulated were shown. Common in seedling studies and common in mature studies were given in separate sheets. GeneID, description, expression pattern and binname were indicated. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8113847.v1
title: Additional file 10: of Identification of key genes and its chromosome regions linked to drought responses in leaves across different crops through meta-analysis of RNA-Seq data

description: Table S4. Genes involved in the leaf developmental stage that are commonly drought-regulated were shown. Common in seedling studies and common in mature studies were given in separate sheets. GeneID, description, expression pattern and binname were indicated. (XLSX 14 kb)
DOI: 10.15161/oar.it/30649
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.8113811
title: Additional file 3: of Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles

description: Amino acid alignment of GH45 sequences derived from Phytophaga beetles used to build the Phylogeny presented in Fig. 4. (TXT 49 kb)
DOI: 10.6084/m9.figshare.8113811.v1
title: Additional file 3: of Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles

description: Amino acid alignment of GH45 sequences derived from Phytophaga beetles used to build the Phylogeny presented in Fig. 4. (TXT 49 kb)
DOI: 10.6084/m9.figshare.8113805
title: Additional file 2: of Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles

description: Amino acid alignment used to build the Phylogeny presented in Fig. 3. (TXT 51 kb)
DOI: 10.6084/m9.figshare.8113805.v1
title: Additional file 2: of Functional diversification of horizontally acquired glycoside hydrolase family 45 (GH45) proteins in Phytophaga beetles

description: Amino acid alignment used to build the Phylogeny presented in Fig. 3. (TXT 51 kb)
DOI: 10.6084/m9.figshare.8113760
title: Additional file 2: of Factors influencing perceptions of private water quality in North America: a systematic review

description: Table S2. Data abstraction for articles included in the systematic review. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.8113760.v1
title: Additional file 2: of Factors influencing perceptions of private water quality in North America: a systematic review

description: Table S2. Data abstraction for articles included in the systematic review. (XLSX 96 kb)
DOI: 10.6084/m9.figshare.8113721
title: Additional file 2: of Height loss but not body composition is related to low back pain in community-dwelling elderlies: Shimane CoHRE study

description: Table S2. A multiple linear regression analysis on height loss with the present body height and body weight. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8113721.v1
title: Additional file 2: of Height loss but not body composition is related to low back pain in community-dwelling elderlies: Shimane CoHRE study

description: Table S2. A multiple linear regression analysis on height loss with the present body height and body weight. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.8113715
title: Additional file 1: of Height loss but not body composition is related to low back pain in community-dwelling elderlies: Shimane CoHRE study

description: Table S1. Correlation coefficients between different measures of body mass. *; p
DOI: 10.6084/m9.figshare.8113715.v1
title: Additional file 1: of Height loss but not body composition is related to low back pain in community-dwelling elderlies: Shimane CoHRE study

description: Table S1. Correlation coefficients between different measures of body mass. *; p
DOI: 10.6084/m9.figshare.8113706
title: Additional file 6: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Quadruplex coverage at 6 aggregation levels. (XLSX 20868 kb)
DOI: 10.6084/m9.figshare.8113706.v1
title: Additional file 6: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Quadruplex coverage at 6 aggregation levels. (XLSX 20868 kb)
DOI: 10.6084/m9.figshare.8113700
title: Additional file 5: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Stem-loop coverage at 6 aggregation levels. (XLSX 46355 kb)
DOI: 10.6084/m9.figshare.8113700.v1
title: Additional file 5: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Stem-loop coverage at 6 aggregation levels. (XLSX 46355 kb)
DOI: 10.6084/m9.figshare.8113691
title: Additional file 4: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Breakpoint density at 6 aggregation levels. (XLSX 75829 kb)
DOI: 10.6084/m9.figshare.8113691.v1
title: Additional file 4: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Breakpoint density at 6 aggregation levels. (XLSX 75829 kb)
DOI: 10.6084/m9.figshare.8113685
title: Additional file 3: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: List of 363 translocations form the Mitelman database that fell into hotspots regions. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.8113685.v1
title: Additional file 3: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: List of 363 translocations form the Mitelman database that fell into hotspots regions. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.8113676
title: Additional file 2: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Performance metrics for 708 ML models for all cancer types and all aggregation levels and labeling types. (XLSX 138 kb)
DOI: 10.6084/m9.figshare.8113676.v1
title: Additional file 2: of Tissue-specific impact of stem-loops and quadruplexes on cancer breakpoints formation

description: Performance metrics for 708 ML models for all cancer types and all aggregation levels and labeling types. (XLSX 138 kb)
DOI: 10.6084/m9.figshare.8113646
title: Additional file 3: of Medication adherence influencing factorsâ an (updated) overview of systematic reviews

description: Cross Table. (XLSX 32â kb)
DOI: 10.6084/m9.figshare.8113646.v1
title: Additional file 3: of Medication adherence influencing factorsâ an (updated) overview of systematic reviews

description: Cross Table. (XLSX 32â kb)
DOI: 10.6084/m9.figshare.8113589
title: Additional file 2: of Dissecting TSC2-mutated renal and hepatic angiomyolipomas in an individual with ARID1B-associated intellectual disability

description: Exome CNV calls and heterozygous SNPs in the ARID1B or TSC2 region. Microsoft Excel spreadsheet file containing the worksheets “summary”, “CNVkit_exome-aberrations” and “LOH_ARID1BandTSC2”. The “summary” worksheet contains a detailed description of all other worksheets and the respective data columns. The “CNVkit_exome-aberrations” worksheet contains all the segments called by CNVkit 0.9.4.dev0 which have a copy numer different from 2. The “LOH_ARID1BandTSC2” worksheet contains all heterozygous single nucleotide variants called in the PBL and both kindey and liver AML samples with at least 20 bp coverage in each sample (to reduce sampling bias) with 500 k bases of the ARID1B (chr6[hg19]:156599064–158,031,913) or TSC2 (chr16[hg19]:1597990–2,638,713) gene. Fisher’s exact test from R version 3.4.3 was used to calculate p-values between the PBL and AML read coverages at each SNV position to check for significant deviation from the expected allele fraction. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8113589.v1
title: Additional file 2: of Dissecting TSC2-mutated renal and hepatic angiomyolipomas in an individual with ARID1B-associated intellectual disability

description: Exome CNV calls and heterozygous SNPs in the ARID1B or TSC2 region. Microsoft Excel spreadsheet file containing the worksheets “summary”, “CNVkit_exome-aberrations” and “LOH_ARID1BandTSC2”. The “summary” worksheet contains a detailed description of all other worksheets and the respective data columns. The “CNVkit_exome-aberrations” worksheet contains all the segments called by CNVkit 0.9.4.dev0 which have a copy numer different from 2. The “LOH_ARID1BandTSC2” worksheet contains all heterozygous single nucleotide variants called in the PBL and both kindey and liver AML samples with at least 20 bp coverage in each sample (to reduce sampling bias) with 500 k bases of the ARID1B (chr6[hg19]:156599064–158,031,913) or TSC2 (chr16[hg19]:1597990–2,638,713) gene. Fisher’s exact test from R version 3.4.3 was used to calculate p-values between the PBL and AML read coverages at each SNV position to check for significant deviation from the expected allele fraction. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.8113505
title: Additional file 7: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S6. Forest plots of XRCC3 T241 M Polymorphism and Familial Breast Cancer according to case enrollment subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.8113505.v1
title: Additional file 7: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S6. Forest plots of XRCC3 T241 M Polymorphism and Familial Breast Cancer according to case enrollment subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.8113499
title: Additional file 6: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S5. Forest plots of XRCC3 T241 M Polymorphism and Sporadic Breast Cancer according to case enrollment subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 22 kb)
DOI: 10.6084/m9.figshare.8113499.v1
title: Additional file 6: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S5. Forest plots of XRCC3 T241 M Polymorphism and Sporadic Breast Cancer according to case enrollment subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 22 kb)
DOI: 10.6084/m9.figshare.8113493
title: Additional file 5: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S4. Forest plots of XRCC3 T241 M Polymorphism and Familial Breast Cancer according to NOS subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 9 kb)
DOI: 10.6084/m9.figshare.8113493.v1
title: Additional file 5: of Associations between XRCC3 Thr241Met polymorphisms and breast cancer risk: systematic-review and meta-analysis of 55 case-control studies

description: Figure S4. Forest plots of XRCC3 T241 M Polymorphism and Familial Breast Cancer according to NOS subgroup analysis. (A) Homozygote model: MM vs. TT. (B) Dominant model: TM + MM vs. TT. (C) Recessive model: MM vs. TM + TT. (ZIP 9 kb)