cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/yfg8pkjgf7
title: Ketone Body 3-Hydroxybutyrate Enhances Insulin Sensitivity by Inhibiting PPARγ Ser273 Phosphorylation in Type 2 Diabetic Mice

description: 3-Hydroxybutyrate (3HB) is a small ketone body molecule produced endogenously by the body in the liver. Previous studies have shown that 3HB can reduce blood glucose level in type 2 diabetic patients. However, there is no systematic study and clear mechanism to evaluate and explain the hypoglycemic effect of 3HB. Here we demonstrate that 3HB reduces fasting blood glucose level, improves glucose tolerance, and enhances insulin sensitivity in type 2 diabetic mice through GPR109a receptor. Mechanistically, 3HB increases intracellular Ca2+ levels by activating GPR109a, thereby stimulating adenylate cyclase to increase cAMP concentration, and then activating PKA. Activated PKA inhibits Raf1 activity, resulting in a decrease in ERK1/2 activity and ultimately inhibiting PPARγ Ser273 phosphorylation in adipocytes. Inhibition of PPARγ Ser273 phosphorylation by 3HB altered the expression of PPARγ regulated genes and enhanced insulin sensitivity. Collectively, 3HB ameliorates insulin resistance in type 2 diabetic mice through a pathway of GPR109a/Ca2+/cAMP/PKA/Raf1/ERK1/2/PPARγ.
DOI: 10.6084/m9.figshare.23732454.v3
title: G003_SupplementaryData1.xlsx

description: Dataset and statistical analysis for the paper "Modified Levey-Jennings Chart with Robust Estimator: A Case of Semiconductor Manufacturing Process" submitted to ICoAIMS 2023: 4th International Conference on Applied & Industrial Mathematics and Statistics 2023.
DOI: 10.6084/m9.figshare.25827100.v1
title: Supplementary Material for: Preoperative mapping biopsies with local excision in the treatment of Extramammary Paget Disease: a retrospective cohort study, systematic review and individual patient data analysis

description: Background: Surgical excision of extramammary Paget disease (EMPD) is associated with a high local recurrence rate. 
Objectives: This study aimed to assess the local recurrence rate of EMPD after preoperative mapping biopsy (PMB) with local excision.
Methods: This retrospective study included patients with EMPD who were treated at our dermatosurgery clinic between January 2016 through May 2022. In addition, we retrieved individual patient data of EMPD cases from articles published in PubMed, Cochrane, Embase, and Scopus to compare recurrence rates between patients with or without PMB using Cox’s proportional hazard model.
Results: In total, 146 patients with EMPD were included. Among them 109 underwent PMB. PMB was associated with a significantly reduced recurrence rate. The 5-year recurrence rate was 11.7% (95% CI, 2.1%–20.4%) in cases that underwent PMB and 45.5% (95% CI, 22.3%–61.8%) in cases that did not undergo PMB (hazard ratio, 0.23; 95% CI 0.09-0.59, p = 0.002). 
Conclusion: This study found that PMB before local excision significantly reduced the risk of recurrence when treating EMPD. Further studies are necessary to compare the recurrence rates of PMB, Mohs micrographic surgery and WLE for EMPD.
DOI: 10.6084/m9.figshare.7844201.v3
title: HCP-MMP 1.0 projected on 7T MRI data (59k mesh)

description: Hello everyone,<br>In order to resample the HCP-MMP1.0 parcellation, following steps were done and the new mesh is attached here.<br>1. download needed materials followed by suggestion below:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg06289.html<br>They are:1.1 original mesh( Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii) from BALSA: https://balsa.wustl.edu/WN56<br>1.2 download group standard 32K and 59K spheres for both hemispheres (Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii; Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii, L.sphere.59k_fs_LR.surf.gii & R.sphere.59k_fs_LR.surf.gii) from HCP Github: https://github.com/Washington-University/HCPpipelines/tree/master/global/templates/standard_mesh_atlases <br><br>2. using workbench, separate, resample and merge parcellation files:<br><br>wb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_LEFT Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -cifti-separate Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.32k_fs_LR.dlabel.nii COLUMN -label CORTEX_RIGHT Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.giiwb_command -label-resample Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.L.sphere.32k_fs_LR.surf.gii L.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -label-resample Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.32k_fs_LR.dlabel.gii Q1-Q6_RelatedParcellation210.R.sphere.32k_fs_LR.surf.gii R.sphere.59k_fs_LR.surf.gii BARYCENTRIC Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.niiwb_command -cifti-create-label Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii -left-label Q1-Q6_RelatedParcellation210.L.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii -right-label Q1-Q6_RelatedParcellation210.R.CorticalAreas_dil_Final_Final_Areas_Group.59k_fs_LR.dlabel.nii<br>NOTE: when doing merge, there's error for label-merge function for dlabel.nii file, therefore I changed the code to -cifti-create-label followed the suggestion from:https://www.mail-archive.com/hcp-users@humanconnectome.org/msg03217.html<br><br>3.Pick up the new mesh: Q1-Q6_RelatedParcellation210.CorticalAreas_dil_Final_Final_Areas_Group_Colors.59k_fs_LR.dlabel.nii<br>4. Enjoy :)<br>AcknowledgementThanks for the help of my supervisor Michelle Moerel during this transformation. Wish her all the best~
DOI: 10.6084/m9.figshare.828488.v1
title: De novo assembly of Ensete ventricosum genome sequence

description: This file contains a de novo assembly of the Ensete ventricosum genome based on whole-genome shotgun sequencing by Illumina HiSeq paired reads and assembled using SOAPdenovo. This assembly has, in part, been submitted to GenBank under accession number AMZH00000000.1 (http://www.ncbi.nlm.nih.gov/nuccore/AMZH00000000.1/). However, because of limitations on the number of supercontigs/contigs that GenBank will accept, we did not submit supercontigs and contigs of shorter than 5 kb. The raw data are available from the Sequence Read Archive under accession number SRX202265 (see http://www.ncbi.nlm.nih.gov/sra?LinkName=nuccore_sra_wgs&from_uid=440571971). Data are described in this paper: Harrison, J.; Moore, K.A.; Paszkiewicz, K.; Jones, T.; Grant, M.R.; Ambacheew, D.; Muzemil, S.; Studholme, D.J. A Draft Genome Sequence for Ensete ventricosum, the Drought-Tolerant “Tree Against Hunger”. Agronomy 2014, 4, 13-33.
DOI: 10.17632/vd8wjg8d94
title: Wellbeing of long term exercisers compared to inactive people

description: This is a cross sectional study. Regular exercise is a crucial aspect of a healthy lifestyle, and incorporating it into daily routines can yield significant benefits. This study aimed to compare adults who had engaged in regular exercise for at least three years with those who were inactive, focusing on perceived health, income, stress, and life satisfaction, while controlling for age, gender, and childhood physical activity. A total of 461 participants (74.83% female) completed an online survey via the Qualtrics platform. The results of a multivariate analysis of covariance revealed that regular exercisers reported lower levels of perceived stress and higher levels of perceived health, income, and life satisfaction compared to their inactive counterparts. Although childhood physical activity was more common among regular exercisers, it did not emerge as a statistically significant covariate. While the effect sizes were relatively small, the findings highlighted noticeable differences in overall well-being between long-term exercisers and inactive adults.
DOI: 10.23645/epacomptox.20422176.v2
title: Chemistry Dashboard Data: Factotum

description: DSSTox Substance Identifier <br> Chemical functional use category, in its original form as extracted from original document. <br> Curated harmonized functional use category. Where possible, the functional uses have been harmonized to categories defined by the Organisation for Economic Cooperation and Development, in OECD monograph ENV/JM/MONO(2017)14, <em>Internationally Harmonised Functional, Product, and Article Use Categories</em> (https://one.oecd.org/document/ENV/JM/MONO(2017)14/en/pdf). Other harmonized categories have been defined by EPA ORD. Definitions of all categories are available at <strong>https://ccte-factotum.epa.gov/functional_use_categories/.</strong> <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25 <br>
DOI: 10.6084/m9.figshare.24105303.v1
title: Code availability

description: Commands are available.
DOI: 10.6084/m9.figshare.28062008.v1
title: National COVID Vaccination Data in Bangladesh for the period of 3<sup>rd</sup> April 2020 - 19<sup>th</sup> January 2023

description: <b>National COVID Vaccination Data (with daily incidence, weeknumber, lockdown status, and variants) in Bangladesh for the period of 3</b><sup><strong>rd</strong></sup><b> April </b><b>2020 - 19</b><sup><strong>th</strong></sup><b> January 2023</b>. Collected from Public Domain Data, generated from COVID Dashboard, Website of DGHS (Directorate General of Health Services) under MOHFW (Ministry of Health and Family Welfare), Bangladesh and IEDCR (Institute of Epidemiology Disease Control And Research), Dhaka, Bangladesh. All compiled by Dr. Pratyay Hasan.
DOI: 10.17632/4djw8z3jrb
title: Juneau Icefield 1770-2020

description: Data for: Accelerating glacier volume loss on Juneau Icefield driven by non-linear processes
DOI: 10.17632/bwm3s394sk
title: Promoting healthy aging through exergames among older adults dataset

description: This data set corresponds to the paper entitled "Promoting healthy aging through exergames among older adults: single-player vs. multi-player modes". Participants were divided into three groups (single group, same-sex partner group, and couple group) according to their intimate relationships. The dataset includes participants' demographic information (age, gender, education, exergame experience, and digital proficiency), mean heart rate during the exergame, game scores, sociability before and after playing the exergames, flow experience, and game experience.
DOI: 10.25442/hku.18623522.v8
title: The Belt and Road Initiative on Twitter: An Annotated Dataset

description: Initiated by the Chinese president Xi Jinping in 2013, the Belt and Road initiative (BRI) is a multi-trillion-dollar agenda for facilitating trade and investment, especially massive infrastructural developments. In recent years, discussions around the BRI have been increasing as more than 130 countries and 30 international organizations have officially joined the initiative, collaborating in a series of transnational infrastructure projects funded by Chinese companies or the Chinese state. This dataset provides 500,711 posts and 714,794 reposting threads related to the BRI on Twitter. The dataset was collected through the Twitter API by applying a set of keywords: “belt and road”, “one belt one road”, “new silk road”, “maritime silk road”, and “silk road economic belt”, which included the words and their hashtag forms to download the raw data from Twitter. The time series of the dataset is from 7 September 2013 to 30 November 2021. Furthermore, the dataset is annotated in terms of languages, emotional polarity, geopolitical entities, and credibility by employing textual analytics in language detection, neural machine translation, and lexicon-based sentiment analysis. To facilitate future research, we classified the dataset into three databases that can be analyzed separately and reused in research related to various fields, such as political science, network science, and sociology to study public opinions about the BRI and their dissemination patterns. <br> All programming scripts required to reproduce the dataset are available at: https://github.com/edmangog/The-BRI-on-Twitter
DOI: 10.6084/m9.figshare.26264912.v1
title: A VibV Dataset Integrating Vibration and Vision for Enhanced Safety in Self-Driving Tasks

description: Due to the complexity of real-world traffic scenarios, autonomous driving systems still face safety challenges and uncontrolled threats in blind spots. Currently, these systems primarily rely on cameras, LiDAR, radar, and their fusion to perceive the environment. However, under special road conditions or extreme weather, they may exhibit defects, resulting in false detections or missed detections, which can lead to safety accidents. This paper proposes the VibV dataset, which introduces vehicle vibration signals into the autonomous driving perception system. By increasing the modalities of information, it enhances the system's sensing capabilities, thereby improving safety. This dataset recorded vibration signals and vision data simultaneously in scenes such as rumble strips and speed bumps. It performed a total of 39 experiments over the course of two months, resulting in 39 segments of vibration data and 22,677 original video frames. The vibration signals underwent preliminary processing, and the images were manually annotated and classified. Technical evaluations have proven the dataset's usability and reliability. It can be applied to a wider range of autonomous driving tasks to enhance safety and robustness.<br>
DOI: 10.17632/9bsc36jyrt
title: H&E-stained oral squamous cell carcinoma histological images dataset

description: Computer-aided diagnosis (CAD) can be used as an important tool to aid and enhance pathologists' diagnostic decision-making. Deep learning techniques, such as convolutional neural networks (CNN) and fully convolutional networks (FCN), have been successfully applied in medical and biological research. Unfortunately, histological image segmentation is often constrained by the availability of labeled training data once labeling histological images for segmentation purposes is a highly-skilled, complex, and time-consuming task. This paper presents the hematoxylin and eosin (H&E) stained oral cavity-derived cancer (OCDC) dataset, a labeled dataset containing H&E-stained histological images of oral squamous cell carcinoma (OSCC) cases. The tumor regions in our dataset are labeled manually by a specialist and validated by a pathologist. The OCDC dataset presents 1,020 histological images of size 640x640 pixels containing tumor regions fully annotated for segmentation purposes. All the histological images are digitized at 20x magnification.
DOI: 10.17632/nj7cm9c4nn
title: Data for: Interactions and Influencing Factors of Baltic Dry Index and Tianjin Shipping Index

description: freight and stock market data
DOI: 10.17632/p848zkkd8r
title: Data for: Stop the music? The effect of music on risky financial decisions: An experimental study

description: The data includes all subjects' answers to the questionnaire using in this paper.
DOI: 10.6084/m9.figshare.11841309.v1
title: Supplementary Material for: Effect of Breathing Oxygen-Enriched Air on Exercise Performance in Patients with Chronic Obstructive Pulmonary Disease: Randomized, Placebo-Controlled, Cross-Over Trial

description: <b><i>Background:</i></b> Patients with chronic obstructive pulmonary disease (COPD) experience dyspnea and hypoxemia during exercise. <b><i>Objective:</i></b> The aim of this study was to evaluate the effects of breathing oxygen-enriched air on exercise performance and associated physiological changes in patients with COPD. <b><i>Methods:</i></b> In a randomized, placebo-controlled, single-blind, cross-over trial, 20 patients with COPD (11 women, age 65 ± 6 years, FEV<sub>1</sub> 64 ± 19% pred., resting SpO<sub>2</sub> ≥90%) performed 4 cycle ergospirometries to exhaustion using an incremental exercise test (IET) and a constant work rate (at 75% maximal workload with air) exercise test (CWRET), each with ambient (FiO<sub>2</sub> 0.21) and oxygen-enriched (FiO<sub>2</sub> 0.5) air. The main outcomes were the change in maximal workload in the IET and the change in exercise duration in the CWRET with oxygen versus air. Electrocardiogram, pulmonary gas exchange, thoracic volumes by inductance plethysmography, arterial blood gases, and cerebral and quadriceps muscle tissue oxygenation (CTO and MTO) were additionally measured. <b><i>Results:</i></b> In the IET, maximal workload increased from 96 ± 21 to 104 ± 28 W with oxygen. In the CWRET, exercise duration increased from 605 ± 274 to 963 ± 444 s with oxygen. At end-exercise with oxygen, CTO, MTO, PaO<sub>2</sub>, and PaCO<sub>2</sub> were increased, while V’E/V’CO<sub>2</sub> was reduced and thoracic volumes were similar. At the corresponding time to end of exercise with ambient air, oxygen decreased heart rate, respiratory rate, minute ventilation, and V’E/V’CO<sub>2</sub>, while oxygenation was increased. <b><i>Conclusion:</i></b> In COPD patients without resting hypoxemia, breathing oxygen-enriched air improves exercise performance. This relates to a higher arterial oxygen saturation promoting oxygen availability to muscle and cerebral tissue and an enhanced ventilatory efficiency. COPD patients may benefit from oxygen therapy during exercise training.
DOI: 10.6084/m9.figshare.22559851.v1
title: X-ray diffraction intensities of the hydrothermal ferromanganese oxides obtained from a petit-spot volcano

description: The dataset is the results of powder X-ray diffraction analysis (consisting of columns of degree of 2θ and X-ray diffraction intensity of each sample) for hydrothermal ferromanganese oxides obtained from a petit-spot volcano in western North Pacific Ocean. The analysis was performed using an Ultima IV instrument (Rigaku, Tokyo, Japan) at the University of Tokyo with CuKα radiation (40 kV and 30 mA) at the University of Tokyo. The scan range was 3°–75°(2θ) at a scan rate of 1°per minute. The mineral compositions of the samples are shown in the reference dataset (https://doi.org/10.6084/m9.figshare.22559803).
DOI: 10.17632/mwsxdb2tpm
title: Codes for local resistance equivalence pore-throat segmentation (LoREPorTS)

description: The codes are used to locate the boundary between a pore and a throat when extracting networks from the digital core. Documentation and examples to illustrate the usage of the program are included. Moreover, the codes to calculate absolute permeability based on the extracted network are included, too. Note, the porespy (version 2.0.2)  and openpnm (version 2.6.1) must be pre-installed in order to run the codes successfully.
DOI: 10.17632/vff34nh6mp
title: Polyatomic surface fitting, vibrational-rotational analysis, expectation value and intensity program

description: Abstract A computer program, SURVIBTM, has been developed for fitting multi-dimensional potential energy and property surfaces and calculating vibrational-rotational spectra of symmetric and asymmetric top polyatomic molecules. Given surfaces in the form of internal coordinates and energy or property points, the program performs seven main types of calculations. These include determining equilibrium and saddle point geometries, internal coordinate force fields, normal mode eigensolutions, normal coord... Title of program: SURVIBTM Catalogue Id: ABDZ_v1_0 Nature of problem The Assignment of specific bands and other spectral information for polyatomic molecules is a continuing problem. Theoretical vibrational- rotational analysis is needed to aid in the identification and explanation of many measured spectra. In addition, many molecules not currently amenable to spectroscopic analysis may be studied using ab initio potential energy surfaces. There have been significant advances in the studies of molecular potential energy and property surfaces in recent years. A si ... Versions of this program held in the CPC repository in Mendeley Data ABDZ_v1_0; SURVIBTM; 10.1016/0010-4655(88)90076-8 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.17632/xvbw3dyk3w
title: Data for: Acute hypoxia and reoxygenation: effect on oxidative stress and hypoxia signal transduction in the juvenile yellow catfish (Pelteobagrus fulvidraco)

description: These data are the raw data of Fig. 2-3 and Fig. S1-2 in this manuscript
DOI: 10.6084/m9.figshare.12636710.v1
title: SI_Table_biomass.xlsx

description: Supplementary dataset to <i>Ecosystem-level carbon stocks and sequestration rates in mangroves in the Cananéia-Iguape lagoon estuarine system, southeastern Brazil</i>, by Rovai et al. in Forest Ecology and Management<br><br>
DOI: 10.6084/m9.figshare.26545675.v1
title: Moreira et al. 2024

description: In this study, we conducted a broad-scale study across three distant regions (California, Spain, and Sweden), comparing plant defenses and insect herbivory in serpentine and non-serpentine habitats within each region. We performed in situ leaf sampling for 78 plant species to quantify leaf damage by chewing insects, as well as plant secondary metabolites, nutrients, and physical traits potentially associated with herbivory. To gain mechanistic insight into soil bottom-up effects, we collected soil samples and quantified a suite of variables such as pH, texture, nutrient content, and heavy metal content. We aimed to determine whether these variables predicted variation in plant traits and herbivory, and to test for plant trait-mediated effects on leaf herbivory.
DOI: 10.6084/m9.figshare.28943624.v1
title: <b>Single-cell long-read Hi-C, scNanoHi-C2, details 3D genome reorganisation in embryonic stage germ cells</b>

description: This dataset contains the SourceData related to the work: Single-cell long-read Hi-C, scNanoHi-C2, details 3D genome reorganisation in embryonic stage germ cells. See SourceData.xlsx for descriptions for each items.
DOI: 10.6084/m9.figshare.6818777.v1
title: Experiment 5F-SubjectB-160311-5St-SGLHand-HFREQ

description: Experiment in which subject performed motor imagery of a single hand's 5 finger motions, recorded using higher sampling rate setting of 1000 Hz.
DOI: 10.6084/m9.figshare.15153525.v1
title: Dataset for "Inferring simple but precise quantitative models of human oocyte and early embryo development"

description: Anonymized clinical IVF data for treatments at the Brigham Women's hospital. <br><br>There are 4 data files. Two of the files (cycle-*-data-cleaned.csv) describe just cycles, with one row corresponding to a unique cycle (not a unique patient). The other two files (merged-*-data-cleaned.csv) describe oocyes, with one row corresponding to a unique oocyte. For convenience, the cycle-level data is included at each oocyte.<br><br>Both datasets are split 70-30 into train and test sets, with the same split for both oocytes and cycles (i.e. if a cycle is in the test set, all its oocytes are in the test set).<br><br>Details of what the variables mean are described in the four "codebook" files.<br>
DOI: 10.6084/m9.figshare.18866030.v1
title: ABMDR2000380

description: HLA sequencing data