cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.95e4zs
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Megastomatohyla pellita (Duellman, 1968))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 33 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057482-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gueo4o
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eutaxia cuneata Meisn.",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 39 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045032-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-48436
title: Redemption tidings, vol. 27, nos. 1-26, 5 Jan. - 21 Dec. 1951

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes We hold the lines in each issue (5 Jan. - 16 Feb., 16 Mar. - 27 Apr., 8 June, 6 July - 31 Aug., 28 Sept. - 21 Dec. 1956) except vol. 27 nos. 5, 10-11, 13 & 19. Bound with vol. 26.
DOI: 10.15468/dl.brxau7
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocidura littoralis Heller, 1910"
 ]
}

 The dataset includes 416 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0349542-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2kcc3
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sarcohyla pentheter (Adler, 1965))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 176 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057491-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcp4dg
title: Occurrence Download

description: A dataset containing 44038 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias syriaca L."
 ]
}

 The dataset includes 44038 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160992-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grxmcg
title: Occurrence Download

description: A dataset containing 72499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is AUS.10_1",
 "TaxonKey is Agaricales"
 ]
}

 The dataset includes 72499 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0349547-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-47687
title: Redemption tidings, vol. 23, nos. 1-26, 3 Jan. - 19 Dec. 1947

description: [description english/roman)] Issued fortnightly (every two weeks). "A full gospel magazine for all believers" -- subtitle. Includes Tidings from our missionaries in each issue (3 Jan. - 6 June, 4 July - 19 Dec. 1947) except vol. 23, nos. 13 & 20. Bound with vol. 22.
DOI: 10.15468/dl.m3kva7
title: Occurrence Download

description: A dataset containing 7005 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ichthyosaura alpestris (Laurenti, 1768)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1990",
 "Country is one of (Belgium, France, Netherlands, Germany, Luxembourg)",
 "CoordinateUncertaintyInMeters is less than or equal to 200"
 ]
}

 The dataset includes 7005 records from 154 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128950-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nppad
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panax notoginseng (Burkill) F.H.Chen"
 ]
}

 The dataset includes 113 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0160970-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pf389b
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyphessobrycon panamensis Durbin, 1908"
 ]
}

 The dataset includes 215 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0343080-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ku6pz2
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Batis minulla",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 71 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063322-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29r2rj
title: Occurrence Download

description: A dataset containing 2578102 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Venezuela (Bolivarian Republic of)"
 ]
}

 The dataset includes 2578102 records from 1615 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161002-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17104803
title: MBB characteristics for ANN model training

description: Characteristics of mycelium-based biocomposites (MBB) used for training of an artificial neuron network (ANN) model alongside the methodology of the characteristics measurements.
DOI: 10.5281/zenodo.17104804
title: MBB characteristics for ANN model training

description: Characteristics of mycelium-based biocomposites (MBB) used for training of an artificial neuron network (ANN) model alongside the methodology of the characteristics measurements.
DOI: 10.2909/aa809355-f50a-4925-9fb1-bef32ff1c9aa
title: Normalised Difference Vegetation Index 2014-2020 (raster 300 m), global, 10-daily - version 1

description: The Normalised Difference Vegetation Index (NDVI) is a proxy to quantify the vegetation amount. It is defined as NDVI=(NIR-Red)/(NIR+Red) where NIR corresponds to the reflectance in the near infrared band, and Red to the reflectance in the red band. It is closely related to FAPAR and is little scale dependant.
DOI: 10.15468/dl.6dhqwj
title: Occurrence Download

description: A dataset containing 172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((6.00694 44.09846,6.0186 44.0956,6.02543 44.09499,6.0371 44.09601,6.04079 44.09969,6.04421 44.10418,6.04535 44.10949,6.04563 44.11399,6.04279 44.11848,6.03311 44.12236,6.02742 44.12318,6.01832 44.12318,6.01434 44.12256,6.01064 44.12011,6.00808 44.11644,6.00267 44.11235,6.00097 44.10827,6.00154 44.10541,6.00381 44.10214,6.00694 44.09846))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arthropoda"
 ]
}

 The dataset includes 172 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002693-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.886mcz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacosternum namaquense Werner, 1910",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032232-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ggq8bq
title: Occurrence Download

description: A dataset containing 2390 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saguinus midas (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2390 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032233-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r6ux77
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacosternum namaquense Werner, 1910",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032235-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15628021
title: Data of IMHF and SAPS
DOI: 10.5281/zenodo.15628022
title: Data of IMHF and SAPS
DOI: 10.15468/dl.6uzwnj
title: Occurrence Download

description: A dataset containing 10477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((144.45942 -38.06295,144.69018 -38.06295,144.69018 -37.91018,144.45942 -37.91018,144.45942 -38.06295))",
 "OccurrenceStatus is Present",
 "TaxonKey is Malacorhynchus membranaceus (Latham, 1801)",
 "Year 2012-2025"
 ]
}

 The dataset includes 10477 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032236-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29276567
title: Supplementary Material for: Easy-PSAP: an integrated workflow to prioritize pathogenic variants in sequence data from a single individual

description: Introduction 
Next-Generation Sequencing data analysis has become an integral part of clinical genetic diagnosis, raising the question of variant prioritization. The Population Sampling Probability (PSAP) method has been developed to tackle the issue of variant prioritization in the exome of a single patient, by leveraging allele frequencies from population databases and a variant pathogenicity score. 
Methods
Here, we present Easy-PSAP, a completely new implementation of the PSAP method comprising two user-friendly and highly adaptable pipelines. Easy-PSAP allows the gene-based recalibration of any in silico pathogenicity prediction score compared to scores of variants seen in the general population, including popular scores like CADD or AlphaMissense. Easy-PSAP can evaluate genetic variants at the scale of a whole exome or a whole genome using information from the latest population and annotation databases. 
Results
Through simulations on synthetic disease exomes, we show that Easy-PSAP is able to rank more than 50% of causal pathogenic variants in the top 10 variants for an autosomal dominant model of transmission and in the top 1 for an autosomal recessive model of transmission. 
Discussion
These findings, along with the accessibility of the pipeline to both researchers and clinicians, make Easy-PSAP a state-of-the-art tool for variant prioritization in Next Generation Sequencing (NGS) data that can continue to evolve as new frameworks and databases become available. Easy-PSAP is implemented in R and bash within an open-source Snakemake framework. It is available on GitHub alongside conda environments containing the required dependencies (https://github.com/msogloblinsky/Easy-PSAP).
DOI: 10.6084/m9.figshare.29276567.v1
title: Supplementary Material for: Easy-PSAP: an integrated workflow to prioritize pathogenic variants in sequence data from a single individual

description: Introduction 
Next-Generation Sequencing data analysis has become an integral part of clinical genetic diagnosis, raising the question of variant prioritization. The Population Sampling Probability (PSAP) method has been developed to tackle the issue of variant prioritization in the exome of a single patient, by leveraging allele frequencies from population databases and a variant pathogenicity score. 
Methods
Here, we present Easy-PSAP, a completely new implementation of the PSAP method comprising two user-friendly and highly adaptable pipelines. Easy-PSAP allows the gene-based recalibration of any in silico pathogenicity prediction score compared to scores of variants seen in the general population, including popular scores like CADD or AlphaMissense. Easy-PSAP can evaluate genetic variants at the scale of a whole exome or a whole genome using information from the latest population and annotation databases. 
Results
Through simulations on synthetic disease exomes, we show that Easy-PSAP is able to rank more than 50% of causal pathogenic variants in the top 10 variants for an autosomal dominant model of transmission and in the top 1 for an autosomal recessive model of transmission. 
Discussion
These findings, along with the accessibility of the pipeline to both researchers and clinicians, make Easy-PSAP a state-of-the-art tool for variant prioritization in Next Generation Sequencing (NGS) data that can continue to evolve as new frameworks and databases become available. Easy-PSAP is implemented in R and bash within an open-source Snakemake framework. It is available on GitHub alongside conda environments containing the required dependencies (https://github.com/msogloblinsky/Easy-PSAP).
DOI: 10.6084/m9.figshare.29276570
title: Supplementary Material for: Buschke-Lowenstein Tumor: An Unusual Therapeutic Approach

description: Giant condyloma acuminatum, known as Buschke-Lowenstein tumor, is a rare benign tumor. Several risk factors are described, including immunosuppression, diabetes, tobacco use, and multiple sexual partners, with about 90% of cases being associated with human papillomavirus infection. Given the rarity of this lesion, there are still no established guidelines for the assessment and treatment of this tumor. The most reported and consensus approach described in the literature is surgical intervention. 
We report a case of a 32-year-old man who was immunosuppressed following a lung transplant due to cystic fibrosis. He also had stage IV chronic kidney disease and chronic pancreatitis. 
The patient was evaluated in a proctology consultation due to complaints of itching, perianal pain, and constipation with a 4-month history. Clinical examination showed a cauliflower-like, papillomatous tumor measuring 9 cm along the perianal area with other surrounding smaller lesions. The assessment of immunodeficiency virus, hepatitis C virus, hepatitis B virus and syphilis was negative. The patient denied engaging in receptive anal sex and other risky sexual behaviors. A macro biopsy of the lesion was performed and the histopathological examination revealed an anal condyloma acuminatum, with no signs of malignancy.
Therapy with imiquimod was initiated, for several weeks, with no significant reduction of lesion size. In a multidisciplinary discussion, it was decided to start neoadjuvant chemoradiotherapy with capecitabine and mitomycin. After 5 months of treatment, a significant reduction in lesion size was observed with significant clinical improvement. Currently, the patient has no proctological symptoms and no need for analgesia.
DOI: 10.6084/m9.figshare.29276570.v1
title: Supplementary Material for: Buschke-Lowenstein Tumor: An Unusual Therapeutic Approach

description: Giant condyloma acuminatum, known as Buschke-Lowenstein tumor, is a rare benign tumor. Several risk factors are described, including immunosuppression, diabetes, tobacco use, and multiple sexual partners, with about 90% of cases being associated with human papillomavirus infection. Given the rarity of this lesion, there are still no established guidelines for the assessment and treatment of this tumor. The most reported and consensus approach described in the literature is surgical intervention. 
We report a case of a 32-year-old man who was immunosuppressed following a lung transplant due to cystic fibrosis. He also had stage IV chronic kidney disease and chronic pancreatitis. 
The patient was evaluated in a proctology consultation due to complaints of itching, perianal pain, and constipation with a 4-month history. Clinical examination showed a cauliflower-like, papillomatous tumor measuring 9 cm along the perianal area with other surrounding smaller lesions. The assessment of immunodeficiency virus, hepatitis C virus, hepatitis B virus and syphilis was negative. The patient denied engaging in receptive anal sex and other risky sexual behaviors. A macro biopsy of the lesion was performed and the histopathological examination revealed an anal condyloma acuminatum, with no signs of malignancy.
Therapy with imiquimod was initiated, for several weeks, with no significant reduction of lesion size. In a multidisciplinary discussion, it was decided to start neoadjuvant chemoradiotherapy with capecitabine and mitomycin. After 5 months of treatment, a significant reduction in lesion size was observed with significant clinical improvement. Currently, the patient has no proctological symptoms and no need for analgesia.
DOI: 10.15468/dl.qtfuq6
title: Occurrence Download

description: A dataset containing 1637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saimiri oerstedii (Reinhardt, 1872)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1637 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032237-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s9xm4y
title: Occurrence Download

description: A dataset containing 74962 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'PH'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 74962 records were derived from 505 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032226-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auw9nu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cacosternum namaquense Werner, 1910",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032238-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56nwyg
title: Occurrence Download

description: A dataset containing 4515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saimiri sciureus (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4515 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032239-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.