cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/6vyz9a
title: p279_PechRouge_2024_angles_data.tab

description: This file contains the raw phenotypic data of leaf inclination measurements performed with a poro-fluorometer LI-600N inclinometer (LI-COR Inc., Lincoln, NE, USA), with one value per individual leaf of the grapevine diversity panel (in total 6 values per cultivar in each block). “QrCode” is the unique identifier used to retrieve the cultivar name from the dataset “p279_PechRouge_2024_identification.csv”. The column “Inclination” is the inclination of the leaf relative to the horizontal plane (°), calculated from the columns “pitch”, slope from horizontal (°), and “roll”, rotation from the horizontal (°), as inclination = acos(cos(pitch) x cos(roll)) (Escribano‐Rocafort et al., 2014). “Date” is the date of measurement and “Time” the solar time of measurement. Air temperature (“Tref”, in °C), relative humidity (“rh_r”, in %) and air vapour pressure (“VPref”, in kPa), were measured by the device at the leaf level at the same time as leaf inclination. This file was used in the R script “BLUPs_extraction_all_traits.Rmd” to explore the variability of leaf inclination and extract genotypic values (BLUPs) using mixed models with fixed effects including climatic effects.
DOI: 10.57745/seqazm
title: Leaf temperature, morpho-physiological traits involved in the leaf energy balance, and their genetic analysis in a grapevine diversity panel

description: This dataset comes from a panel of 279 grapevine (Vitis Vinifera L.) cultivars (Nicolas et al., 2016). Measurements were performed during the summer 2024 on 3-year-old plants grafted on SO4 rootstock (Vitis berlandieri × Vitis riparia) cultivated at Pech Rouge INRAE experimental station, Gruissan, in southern France (43.14° North | 3.14° East). The experimental trial contained 253 cultivars from the diversity panel, and was planted at 2.5 x 0.9 m spacing. Rows were oriented East-Southeast/West-Northwest. The experimental design consisted of two adjacent complete blocks with respectively 15 and 22 rows of variable length. Each row was subdivided into 13 or 21 elementary plots made of five contiguous plants of one same cultivar. On this panel, leaf temperature (Tleaf) and stomatal conductance were measured using a fluoro-porometer, leaf inclination with an inclinometer, leaf reflectance and transmittance were calculated from spectra obtained with an integrative sphere, leaf area and unfolding (ratio of folded area over spread area) were obtained by photographing the leaves and analysing their area on ImageJ. Leaves were systematically chosen as primary, fully expanded and well-irradiated, and measurements were performed from the beginning of June to the beginning of July. For all traits, the best linear unbiased predictors (BLUPs) of genetic values were estimated using mixed linear models taking into account some climatic variables. Along with genotypic data composed of 197,885 SNPs issued from microarray and genotyping-by-sequencing (Flutre et al., 2022) and reduced to 82,868 SNPs (exclusion of SNPs that did not vary across the panel, SNPs with a minor allelic frequency below 5% and duplicated positions, Coupel-Ledru et al., 2024), BLUPs were then used to perform three types of genome wide association studies (GWAS, MM4LMM, MLMM and varbvs) to detect SNPs associated with the different traits. BLUPs were further used in a mechanistic model of the leaf energy balance to better understand which of the morpho-physiological traits among those involved in the leaf energy balance could drive Tleaf genetic variation. The overall goals of this study were to investigate genomic regions associated with leaf temperature and whether these regions co-localized to morphophysiological traits, and to shed light on their respective weight in Tleaf regulation through the energy balance equations. The associated publication is: Chir Laurine, Boulord Romain, Coindre Eva, Segura Vincent, Saurin Nicolas, Doligez Agnès, Pallas Benoît, Simonneau Thierry, Coupel-Ledru Aude (2025). Genetic variability of leaf temperature and underlying morpho-physiological traits in a grapevine diversity panel. Journal of Experimental Botany. DOI: https://doi.org/10.1093/jxb/eraf324. English
DOI: 10.15468/dl.3xcgth
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Craugastor fitzingeri)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080613-250717081556266/datasets/export for details.
DOI: 10.6084/m9.figshare.29711501.v1
title: Deep learning provides new insights into the molecular mechanisms of insect metamorphosis

description: GNCM_293 insect genomes are the genomic data retained after the longest transcripts were removed in this study. The genomic data of 293 insects were obtained from National Center for Biotechnology Information (https://www.ncbi.nlm.nih.gov/) , with protein-coding genes as the raw data samples (Table S1). These insects were classified into two categories according to their metamorphic type characteristics (Hemimetabolous and Holometabolous): 36 hemimetabolous insects in 8 orders and 257 holometabolous insects in 6 orders, to study the functions of key genes during metamorphic.Due to the large size of the training, validation, and testing GNCM datasets (41.6 GB), they can be obtained from the corresponding author, Youjie Zhao (bioala@swfu.edu.cn), upon reasonable request.
DOI: 10.15468/dl.i7scew
title: Occurrence Download

description: A dataset containing 1081885782 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Observation"
 ]
 },
 "Year 1970-2017"
 ]
}

 The dataset includes 1081885782 records from 14358 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000407-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hab38
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetrataenium olgae",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010639-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76renp
title: Occurrence Download

description: A dataset containing 2320903 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Sphyrapicus varius (Linnaeus, 1766)",
 "Year is greater than or equal to 1950",
 {
 "or" : [
 "GadmGid is USA",
 "GadmGid is CAN",
 "GadmGid is MEX"
 ]
 }
 ]
}

 The dataset includes 2320903 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012075-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/jn8-lzc-pqn
title: Rhododendron schlippenbachii Maxim.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnrp13
title: CCDC 618575: Experimental Crystal Structure Determination

description: Related Article: Bin Wang, Minxiong Li, Shansheng Xu, Haibin Song, Baiquan Wang|2007|Synthesis|2007|1304|doi:10.1055/s-2007-965996
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/1x3-68m-nbl
title: Crupina vulgaris Cass.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnrp24
title: CCDC 618576: Experimental Crystal Structure Determination

description: Related Article: Bin Wang, Minxiong Li, Shansheng Xu, Haibin Song, Baiquan Wang|2007|Synthesis|2007|1304|doi:10.1055/s-2007-965996
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13140/rg.2.2.17002.41920
title: Drugs and Gender 18-07-20
DOI: 10.15468/dl.3wptp4
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-85.66277 -40.25579,-49.33723 -40.25579,-49.33723 -25.74421,-85.66277 -25.74421,-85.66277 -40.25579))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stipa scirpea"
 ]
}

 The dataset includes 16 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029553-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccnrp35
title: CCDC 618577: Experimental Crystal Structure Determination

description: Related Article: Bin Wang, Minxiong Li, Shansheng Xu, Haibin Song, Baiquan Wang|2007|Synthesis|2007|1304|doi:10.1055/s-2007-965996
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/ehr-gwv-9k2
title: Epilobium collinum C. C. Gmel.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.nq3csc
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.87118 -56.42031,-15.12882 -56.42031,-15.12882 -12.57969,-124.87118 -12.57969,-124.87118 -56.42031))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stipa chrysophylla"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029552-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/kkc-knj-xtm
title: Teucrium chamaedrys L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc9z7r7
title: CCDC 297189: Experimental Crystal Structure Determination

description: Related Article: M.Madre, M.Ikaunieks, S.Belyakov|2007|Synthesis|2007|1325|doi:10.1055/s-2007-966015
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnrp46
title: CCDC 618578: Experimental Crystal Structure Determination

description: Related Article: Bin Wang, Minxiong Li, Shansheng Xu, Haibin Song, Baiquan Wang|2007|Synthesis|2007|1304|doi:10.1055/s-2007-965996
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/qym-vhy-bk7
title: Pallenis spinosa (L.) Cass.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnhwcc
title: CCDC 611083: Experimental Crystal Structure Determination

description: Related Article: Yuming Zhao, Ningzhang Zhou, A.D.Slepkov, S.C.Ciulei, R.McDonald, F.A.Hegmann, R.R.Tykwinski|2007|Helv.Chim.Acta|90|909|doi:10.1002/hlca.200790092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/y5f-ld5-0nm
title: Euphorbia sulcata de Lens ex Loisel.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnhwdd
title: CCDC 611084: Experimental Crystal Structure Determination

description: Related Article: Yuming Zhao, Ningzhang Zhou, A.D.Slepkov, S.C.Ciulei, R.McDonald, F.A.Hegmann, R.R.Tykwinski|2007|Helv.Chim.Acta|90|909|doi:10.1002/hlca.200790092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/lyt-8lw-n38
title: Deschampsia cespitosa (L.) P. Beauv.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnhwff
title: CCDC 611085: Experimental Crystal Structure Determination

description: Related Article: Yuming Zhao, Ningzhang Zhou, A.D.Slepkov, S.C.Ciulei, R.McDonald, F.A.Hegmann, R.R.Tykwinski|2007|Helv.Chim.Acta|90|909|doi:10.1002/hlca.200790092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.vvqz9z
title: Occurrence Download

description: A dataset containing 2532 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Freshwater plankton and macroinvertebrate survey in the subcatchments of the Ba River, Viti Levu, Fiji"
 ]
}

 The dataset includes 2532 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029554-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/tak-y16-ggj
title: Carex echinata Murray

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccnhwgg
title: CCDC 611086: Experimental Crystal Structure Determination

description: Related Article: Yuming Zhao, Ningzhang Zhou, A.D.Slepkov, S.C.Ciulei, R.McDonald, F.A.Hegmann, R.R.Tykwinski|2007|Helv.Chim.Acta|90|909|doi:10.1002/hlca.200790092
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/py4-4mw-3mj
title: Vicia grandiflora Scop.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccp3q0h
title: CCDC 629176: Experimental Crystal Structure Determination

description: Related Article: Y.Genisson, L.Lamande, Y.Salma, N.Andrieu-Abadie, C.Andre, M.Baltas|2007|Tetrahedron:Asymm.|18|857|doi:10.1016/j.tetasy.2007.03.029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.hzbk4s
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Phylloscopus borealoides"
 ]
}

 The dataset includes 81 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029555-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/pgh-5xy-t4s
title: Euonymus chibai Makino

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc8zbzj
title: CCDC 267498: Experimental Crystal Structure Determination

description: Related Article: Long-Li Lai, Feng-Ya Su, Kai-Chao Zhan, Yi-Lyang Cai, Yi-Hung Liu, Yu Wang|2007|J.Chin.Chem.Soc.(Taipei)|54|197|doi:10.1002/jccs.200700029
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/sqq-yqk-qr4
title: Erysimum witmannii Zaw.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/yd2-n2m-1nn
title: Lithospermum L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/cc9ggqx
title: CCDC 282029: Experimental Crystal Structure Determination

description: Related Article: Cai-Jun Chen, Bao-An Song, Song Yang, Guang-Fang Xu, P.S.Bhadury, Lin-Hong Jin, De-Yu Hu, Qian-Zhu Li, Fang Liu, Wei Xue, Ping Lu, Zhuo Chen|2007|Bioorg.Med.Chem.|15|3981|doi:10.1016/j.bmc.2007.04.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnshc8
title: CCDC 619360: Experimental Crystal Structure Determination

description: Related Article: Cai-Jun Chen, Bao-An Song, Song Yang, Guang-Fang Xu, P.S.Bhadury, Lin-Hong Jin, De-Yu Hu, Qian-Zhu Li, Fang Liu, Wei Xue, Ping Lu, Zhuo Chen|2007|Bioorg.Med.Chem.|15|3981|doi:10.1016/j.bmc.2007.04.014
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.tcjkyf
title: Occurrence Download

description: A dataset containing 7769 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Stipellula capensis"
 ]
}

 The dataset includes 7769 records from 148 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029556-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccn4sg0
title: CCDC 600422: Experimental Crystal Structure Determination

description: Related Article: Ru-Qin Zhong, Ru-Qiang Zou, Qiang Xu|2007|Microporous and Mesoporous Materials|102|122|doi:10.1016/j.micromeso.2006.12.041
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/1bk-bn3-3yt
title: Orchis laxiflora Lam.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/jh2-2lt-159
title: Asarum fauriei sp. fauriei Franch.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.5517/ccp73tt
title: CCDC 632456: Experimental Crystal Structure Determination

description: Related Article: Ming-Lin Guo, Hui-Zhen Li|2007|Green Chemistry|9|421|doi:10.1039/b700534b
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccn82hg
title: CCDC 603585: Experimental Crystal Structure Determination

description: Related Article: C.Sicre, J.-L.Alonso-Gomez, M.M.Cid|2006|Tetrahedron|62|11063|doi:10.1016/j.tet.2006.09.040
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3535/287-we7-xkw
title: Malva L.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.3535/799-zbn-ejs
title: Genista cinerascens Lange

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.