cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6122387
title: Genome-wide sgRNA library (N20)

description: Genome-wide sgRNA library (N20)
DOI: 10.6084/m9.figshare.6122387.v1
title: Genome-wide sgRNA library (N20)

description: Genome-wide sgRNA library (N20)
DOI: 10.6084/m9.figshare.6122339
title: Tiling sgRNA library (N20)

description: Tiling sgRNA library (N20)
DOI: 10.6084/m9.figshare.6122339.v1
title: Tiling sgRNA library (N20)

description: Tiling sgRNA library (N20)
DOI: 10.6084/m9.figshare.6122291
title: List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome

description: List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome
DOI: 10.6084/m9.figshare.6122291.v2
title: List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome

description: List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome
DOI: 10.6084/m9.figshare.6122291.v1
title: Supplementary Table S3 List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome

description: List of SSR markers found in the Henosepilachna vigintioctopunctata transcriptome
DOI: 10.6084/m9.figshare.6122276
title: KEGG annotations of Henosepilachna vigintioctopunctata unigenes

description: KEGG annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.6084/m9.figshare.6122276.v2
title: KEGG annotations of Henosepilachna vigintioctopunctata unigenes

description: KEGG annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.6084/m9.figshare.6122276.v1
title: Supplementary Table S2 KEGG annotations of Henosepilachna vigintioctopunctata unigenes

description: KEGG annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.6084/m9.figshare.6122249
title: Annotations of Henosepilachna vigintioctopunctata unigenes

description: Annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.6084/m9.figshare.6122249.v1
title: Supplementary Table S1 Annotations of Henosepilachna vigintioctopunctata unigenes

description: Annotations of Henosepilachna vigintioctopunctata unigenes
DOI: 10.21942/uva.6122198.v1
title: Included and Excluded references

description: Included and excluded references. The references were screened with Rayyan by E. van Ewijk (reviewer1) and a student research assistent (reviewer2)<br>
DOI: 10.6084/m9.figshare.6122135
title: Composition of extracted melt at the top boundary of the model as a function of time: Interaction between mantle-derived magma and lower arc crust: quantitative reactive melt flow modelling using STyx

description: Error estimates between experimental data and modelled compositions of melt and stable phases, together with the composition of segregated melt
DOI: 10.6084/m9.figshare.6122135.v1
title: Composition of extracted melt at the top boundary of the model as a function of time: Interaction between mantle-derived magma and lower arc crust: quantitative reactive melt flow modelling using STyx

description: Error estimates between experimental data and modelled compositions of melt and stable phases, together with the composition of segregated melt
DOI: 10.6084/m9.figshare.6122099
title: NAR Molecular Biology Database Collection Data

description: List of NAR Online Molecular Biology Database Collection resources that utilize PDB data (July 2018)
DOI: 10.6084/m9.figshare.6122099.v1
title: NAR Molecular Biology Database Collection Data

description: List of NAR Online Molecular Biology Database Collection resources that utilize PDB data (July 2018)
DOI: 10.6084/m9.figshare.6121937
title: Sequencing of egtA deletion construct-2

description: Sequencing of egtA deletion construct-2
DOI: 10.6084/m9.figshare.6121937.v1
title: Sequencing of egtA deletion construct-2

description: Sequencing of egtA deletion construct-2
DOI: 10.6084/m9.figshare.6121934
title: Sequencing of egtB deletion construct-1

description: Sequencing of egtB deletion construct-1
DOI: 10.6084/m9.figshare.6121934.v1
title: Sequencing of egtB deletion construct-1

description: Sequencing of egtB deletion construct-1
DOI: 10.6084/m9.figshare.6121931
title: Sequencing of mshA deletion construct-2

description: Sequencing of mshA deletion construct-2
DOI: 10.6084/m9.figshare.6121931.v1
title: Sequencing of mshA deletion construct-2

description: Sequencing of mshA deletion construct-2
DOI: 10.6084/m9.figshare.6121928
title: Sequencing of egtC deletion construct-2

description: Sequencing of egtC deletion construct-2
DOI: 10.6084/m9.figshare.6121928.v1
title: Sequencing of egtC deletion construct-2

description: Sequencing of egtC deletion construct-2
DOI: 10.6084/m9.figshare.6121925
title: Sequencing of egtB deletion construct-2

description: Sequencing of egtB deletion construct-2
DOI: 10.6084/m9.figshare.6121925.v1
title: Sequencing of egtB deletion construct-2

description: Sequencing of egtB deletion construct-2
DOI: 10.6084/m9.figshare.6121922
title: Sequencing of egtC deletion construct-1

description: Sequencing of egtC deletion construct-1
DOI: 10.6084/m9.figshare.6121922.v1
title: Sequencing of egtC deletion construct-1

description: Sequencing of egtC deletion construct-1
DOI: 10.6084/m9.figshare.6121919
title: Sequencing of egtD deletion construct-1

description: Sequencing of egtD deletion construct
DOI: 10.6084/m9.figshare.6121916
title: Sequencing of egtD deletion construct-2

description: Sequencing of egtD deletion construct-2
DOI: 10.6084/m9.figshare.6121919.v1
title: Sequencing of egtD deletion construct-1

description: Sequencing of egtD deletion construct
DOI: 10.6084/m9.figshare.6121916.v1
title: Sequencing of egtD deletion construct-2

description: Sequencing of egtD deletion construct-2
DOI: 10.6084/m9.figshare.6121913
title: Sequencing of egtE deletion construct-2

description: Sequencing of egtE deletion construct-2
DOI: 10.6084/m9.figshare.6121913.v1
title: Sequencing of egtE deletion construct-2

description: Sequencing of egtE deletion construct-2
DOI: 10.6084/m9.figshare.6121910
title: Sequencing of mshA deletion construct-1

description: Sequencing of mshA deletion construct-1
DOI: 10.6084/m9.figshare.6121910.v1
title: Sequencing of mshA deletion construct-1

description: Sequencing of mshA deletion construct-1
DOI: 10.6084/m9.figshare.6121907
title: Sequencing of egtE deletion construct-1

description: Sequencing of egtE deletion construct-1
DOI: 10.6084/m9.figshare.6121907.v1
title: Sequencing of egtE deletion construct-1

description: Sequencing of egtE deletion construct-1
DOI: 10.6084/m9.figshare.6121904
title: Sequencing of egtA deletion construct-1

description: Sequencing of egtA deletion construct-1
DOI: 10.6084/m9.figshare.6121904.v1
title: Sequencing of egtA deletion construct-1

description: Sequencing of egtA deletion construct-1
DOI: 10.6084/m9.figshare.6121895
title: Sequencing of egtB/hsp60 promoter complementation construct-1

description: Sequencing of egtB/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121895.v1
title: Sequencing of egtB/hsp60 promoter complementation construct-1

description: Sequencing of egtB/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121892
title: Sequencing of egtD/hsp60 promoter complementation construct-1

description: Sequencing of egtD/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121892.v1
title: Sequencing of egtD/hsp60 promoter complementation construct-1

description: Sequencing of egtD/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121889
title: Sequencing of mshA/hsp60 promoter complementation construct-1

description: Sequencing of mshA/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121886
title: Sequencing of egtC/hsp60 promoter complementation construct-1

description: Sequencing of egtC/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121889.v1
title: Sequencing of mshA/hsp60 promoter complementation construct-1

description: Sequencing of mshA/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121886.v1
title: Sequencing of egtC/hsp60 promoter complementation construct-1

description: Sequencing of egtC/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121883
title: Sequencing of egtA/hsp60 promoter complementation construct-1

description: Sequencing of egtA/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121883.v1
title: Sequencing of egtA/hsp60 promoter complementation construct-1

description: Sequencing of egtA/hsp60 promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121880
title: Sequencing of egtC/hsp60 promoter complementation construct-2

description: Sequencing of egtC/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121880.v1
title: Sequencing of egtC/hsp60 promoter complementation construct-2

description: Sequencing of egtC/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121877
title: Sequencing of mshA/hsp60 promoter complementation construct-2

description: Sequencing of mshA/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121877.v1
title: Sequencing of mshA/hsp60 promoter complementation construct-2

description: Sequencing of mshA/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121874
title: Sequencing of egtB/hsp60 promoter complementation construct-2

description: Sequencing of egtB/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121874.v1
title: Sequencing of egtB/hsp60 promoter complementation construct-2

description: Sequencing of egtB/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121871
title: Sequencing of egtD/hsp60 promoter complementation construct-2

description: Sequencing of egtD/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121871.v1
title: Sequencing of egtD/hsp60 promoter complementation construct-2

description: Sequencing of egtD/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121868
title: Sequencing of egtC/hsp60 promoter complementation construct-2

description: Sequencing of egtC/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121868.v1
title: Sequencing of egtC/hsp60 promoter complementation construct-2

description: Sequencing of egtC/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121865
title: Sequencing of egtA/hsp60 promoter complementation construct-2

description: Sequencing of egtA/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121865.v1
title: Sequencing of egtA/hsp60 promoter complementation construct-2

description: Sequencing of egtA/hsp60 promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121859
title: Sequencing of egtC/native promoter complementation construct-3

description: Sequencing of egtC/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121859.v1
title: Sequencing of egtC/native promoter complementation construct-3

description: Sequencing of egtC/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121856
title: Sequencing of egtA/native promoter complementation construct-1

description: Sequencing of egtA/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121853
title: Sequencing of egtC/native promoter complementation construct-2

description: Sequencing of egtC/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121856.v1
title: Sequencing of egtA/native promoter complementation construct-1

description: Sequencing of egtA/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121847
title: Sequencing of egtA/native promoter complementation construct-2

description: Sequencing of egtA/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121847.v1
title: Sequencing of egtA/native promoter complementation construct-2

description: Sequencing of egtA/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121844
title: Sequencing of egtC/native promoter complementation construct-1

description: Sequencing of egtC/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121844.v1
title: Sequencing of egtC/native promoter complementation construct-1

description: Sequencing of egtC/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121841
title: Sequencing of egtD/native promoter complementation construct-2

description: Sequencing of egtD/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121841.v1
title: Sequencing of egtD/native promoter complementation construct-2

description: Sequencing of egtD/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121838
title: Sequencing of egtB/native promoter complementation construct-3

description: Sequencing of egtB/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121838.v1
title: Sequencing of egtB/native promoter complementation construct-3

description: Sequencing of egtB/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121835
title: Sequencing of egtD/native promoter complementation construct-3

description: Sequencing of egtD/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121832
title: Sequencing of egtB/native promoter complementation construct-3

description: Sequencing of egtB/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121835.v1
title: Sequencing of egtD/native promoter complementation construct-3

description: Sequencing of egtD/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121832.v1
title: Sequencing of egtB/native promoter complementation construct-3

description: Sequencing of egtB/native promoter complementation construct-3
DOI: 10.6084/m9.figshare.6121829
title: Sequencing of egtC/native promoter complementation construct-2

description: Sequencing of egtC/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121826
title: Sequencing of egtD/native promoter complementation construct-4

description: Sequencing of egtD/native promoter complementation construct-4
DOI: 10.6084/m9.figshare.6121829.v1
title: Sequencing of egtC/native promoter complementation construct-2

description: Sequencing of egtC/native promoter complementation construct-2
DOI: 10.6084/m9.figshare.6121826.v1
title: Sequencing of egtD/native promoter complementation construct-4

description: Sequencing of egtD/native promoter complementation construct-4
DOI: 10.6084/m9.figshare.6121823
title: Sequencing of egtB/native promoter complementation construct-1

description: Sequencing of egtB/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121823.v1
title: Sequencing of egtB/native promoter complementation construct-1

description: Sequencing of egtB/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121820
title: Sequencing of egtB/native promoter complementation construct-4

description: Sequencing of egtB/native promoter complementation construct-4
DOI: 10.6084/m9.figshare.6121820.v1
title: Sequencing of egtB/native promoter complementation construct-4

description: Sequencing of egtB/native promoter complementation construct-4
DOI: 10.6084/m9.figshare.6121814
title: Sequencing of egtD/native promoter complementation construct-1

description: Sequencing of egtD/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121814.v1
title: Sequencing of egtD/native promoter complementation construct-1

description: Sequencing of egtD/native promoter complementation construct-1
DOI: 10.6084/m9.figshare.6121808
title: Scanning electron microscopy of the egtE mutant-4

description: Scanning electron microscopy of the egtE mutant-4
DOI: 10.6084/m9.figshare.6121805
title: Scanning electron microscopy of the egtE mutant-3

description: Scanning electron microscopy of the egtE mutant-3
DOI: 10.6084/m9.figshare.6121808.v1
title: Scanning electron microscopy of the egtE mutant-4

description: Scanning electron microscopy of the egtE mutant-4
DOI: 10.6084/m9.figshare.6121805.v1
title: Scanning electron microscopy of the egtE mutant-3

description: Scanning electron microscopy of the egtE mutant-3
DOI: 10.6084/m9.figshare.6121802
title: Scanning electron microscopy of the egtE mutant-1

description: Scanning electron microscopy of the egtE mutant-1
DOI: 10.6084/m9.figshare.6121802.v1
title: Scanning electron microscopy of the egtE mutant-1

description: Scanning electron microscopy of the egtE mutant-1
DOI: 10.6084/m9.figshare.6121799
title: Scanning electron microscopy of the wild-type-3

description: Scanning electron microscopy of the wild-type-3
DOI: 10.6084/m9.figshare.6121799.v1
title: Scanning electron microscopy of the wild-type-3

description: Scanning electron microscopy of the wild-type-3
DOI: 10.6084/m9.figshare.6121796
title: Scanning electron microscopy of the wild-type-4

description: Scanning electron microscopy of the wild-type-4
DOI: 10.6084/m9.figshare.6121796.v1
title: Scanning electron microscopy of the wild-type-4

description: Scanning electron microscopy of the wild-type-4
DOI: 10.6084/m9.figshare.6121793
title: Scanning electron microscopy of the egtE mutant-2

description: Scanning electron microscopy of the egtE mutant-2
DOI: 10.6084/m9.figshare.6121793.v1
title: Scanning electron microscopy of the egtE mutant-2

description: Scanning electron microscopy of the egtE mutant-2
DOI: 10.6084/m9.figshare.6121790
title: Scanning electron microscopy of the wild-type-2

description: Scanning electron microscopy of the wild-type-2
DOI: 10.6084/m9.figshare.6121790.v1
title: Scanning electron microscopy of the wild-type-2

description: Scanning electron microscopy of the wild-type-2
DOI: 10.6084/m9.figshare.6121787
title: Scanning electron microscopy of the wild-type-1

description: Scanning electron microscopy of the wild-type-1
DOI: 10.6084/m9.figshare.6121787.v1
title: Scanning electron microscopy of the wild-type-1

description: Scanning electron microscopy of the wild-type-1
DOI: 10.6084/m9.figshare.6121781
title: Growth curves in ADS media supplement

description: media supplemented with albumin, dextrose and sodium chloride
DOI: 10.6084/m9.figshare.6121778
title: Growth curves mutants in the presence of ergothioneine

description: Growth curves mutants in the presence of ergothioneine
DOI: 10.6084/m9.figshare.6121778.v1
title: Growth curves mutants in the presence of ergothioneine

description: Growth curves mutants in the presence of ergothioneine
DOI: 10.6084/m9.figshare.6121775
title: Growth curves in OADC media supplement

description: Media supplemented with oleic acid, albumin, dextrose, and catalase
DOI: 10.6084/m9.figshare.6121775.v1
title: Growth curves in OADC media supplement

description: Media supplemented with oleic acid, albumin, dextrose, and catalase
DOI: 10.6084/m9.figshare.6121772
title: Growth curves of the genetically complemented strains

description: Growth curves of the genetically complemented strains
DOI: 10.6084/m9.figshare.6121766
title: Dataset for: A silent eligibility trace enables dopamine dependent synaptic plasticity for reinforcement learning in the mouse striatum

description: Learning from positive reinforcement is essential for adaptive behavior. Dopamine dependent synaptic plasticity is a candidate mechanism. Computational models of reinforcement learning assume a silent eligibility trace, initiated by synaptic activity, and transformed into plastic changes by later action of dopamine. To investigate test this hypothesis experimentally, we measured time-dependent modulation of synaptic plasticity by dopamine in adult mouse striatum using whole-cell recording. Experiments focused on synapses of dopamine D1 receptor expressing spiny projection neurons. Presynaptic activity followed by postsynaptic action potentials (pre-post) caused spike-time dependent long-term depression in D1-expressing neurons. Applying a dopamine D1 receptor agonist during induction of spike-time dependentpre-post plasticity caused long-term potentiation. This long-term potentiation was masked by long-term depression occurring concurrently, and was unmasked when long-term depression was blocked by calcium channel antagonists. LLong-term potentiation was blocked by a Ca2+-permeable AMPA receptor antagonist but not by an NMDA antagonist. Spike-time dependent plasticity-inducingPre-post stimulation caused transient elevation of rectification – a marker for expression of Ca2+-permeable AMPA receptors – for two to four seconds after stimulation. Importantly, as a direct test of the eligibility trace hypothesis, dopamine was uncaged at specific time-points before and after pre- and post-synaptic conjunction of activity. Dopamine caused potentiation selectively at synapses that were active two seconds before dopamine release, but not at earlier or later times. Our results provide direct evidence for a synaptic eligibility trace in the synapses of striatal neurons, based on a novel dopamine timing dependent plasticity mechanism.
DOI: 10.6084/m9.figshare.6121766.v1
title: Dataset for: A silent eligibility trace enables dopamine dependent synaptic plasticity for reinforcement learning in the mouse striatum

description: Learning from positive reinforcement is essential for adaptive behavior. Dopamine dependent synaptic plasticity is a candidate mechanism. Computational models of reinforcement learning assume a silent eligibility trace, initiated by synaptic activity, and transformed into plastic changes by later action of dopamine. To investigate test this hypothesis experimentally, we measured time-dependent modulation of synaptic plasticity by dopamine in adult mouse striatum using whole-cell recording. Experiments focused on synapses of dopamine D1 receptor expressing spiny projection neurons. Presynaptic activity followed by postsynaptic action potentials (pre-post) caused spike-time dependent long-term depression in D1-expressing neurons. Applying a dopamine D1 receptor agonist during induction of spike-time dependentpre-post plasticity caused long-term potentiation. This long-term potentiation was masked by long-term depression occurring concurrently, and was unmasked when long-term depression was blocked by calcium channel antagonists. LLong-term potentiation was blocked by a Ca2+-permeable AMPA receptor antagonist but not by an NMDA antagonist. Spike-time dependent plasticity-inducingPre-post stimulation caused transient elevation of rectification – a marker for expression of Ca2+-permeable AMPA receptors – for two to four seconds after stimulation. Importantly, as a direct test of the eligibility trace hypothesis, dopamine was uncaged at specific time-points before and after pre- and post-synaptic conjunction of activity. Dopamine caused potentiation selectively at synapses that were active two seconds before dopamine release, but not at earlier or later times. Our results provide direct evidence for a synaptic eligibility trace in the synapses of striatal neurons, based on a novel dopamine timing dependent plasticity mechanism.
DOI: 10.6084/m9.figshare.6121760
title: In silico designed mshA-deletion construct-4

description: In silico designed mshA-deletion construct-4
DOI: 10.6084/m9.figshare.6121760.v1
title: In silico designed mshA-deletion construct-4

description: In silico designed mshA-deletion construct-4
DOI: 10.6084/m9.figshare.6121757
title: In silico designed mshA-deletion construct-3

description: In silico designed mshA-deletion construct-3
DOI: 10.6084/m9.figshare.6121757.v1
title: In silico designed mshA-deletion construct-3

description: In silico designed mshA-deletion construct-3
DOI: 10.6084/m9.figshare.6121754
title: In silico designed mshA/hsp60-complementation construct

description: In silico designed mshA/hsp60-complementation construct-4
DOI: 10.6084/m9.figshare.6121751
title: mshA genomic region in M.tb when replaced with Hyg-1

description: mshA genomic region in M.tb when replaced with Hyg-1
DOI: 10.6084/m9.figshare.6121754.v1
title: In silico designed mshA/hsp60-complementation construct

description: In silico designed mshA/hsp60-complementation construct-4
DOI: 10.6084/m9.figshare.6121751.v1
title: mshA genomic region in M.tb when replaced with Hyg-1

description: mshA genomic region in M.tb when replaced with Hyg-1