cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.44080
title: Research data supporting "A comparison of entrainment in turbulent line plumes adjacent to and distant from a vertical wall"

description: Two .zip files containing mean flow and turbulent quantities resulting from simultaneous two-dimensional velocity and buoyancy experimental measurements of a free plume and a wall plume along a vertical central plane normal to the plume line source. The velocity measurements were obtained using particle image velocimetry (PIV) and the buoyancy measurements were obtained using planar laser induced fluorescence (PLIF). The data are given in .mat files and include the time-averaged vertical and horizontal velocities and time-averaged buoyancy for five experiments for each plume in an Eulerian frame of reference as well as a plume coordinate system. The time-averages were performed using 12,000 individual velocity/buoyancy fields for each experiment at a temporal resolution of 100 Hz. Also given are the velocity and buoyancy fluctuations, the Reynolds stress's and the turbulent buoyancy fluxes. The quantities in each experiment file are presented using the same coordinate grid which is given in each file. See readme.pdf for a description of the flow quantities presented, their units and their corresponding names in the .mat files.
DOI: 10.6084/m9.figshare.c.3617675_d8
title: MOESM1 of Comparison of the protein-coding gene content of Chlamydia trachomatis and Protochlamydia amoebophila using a Raspberry Pi computer

description: Additional file 1. Group Information. Contains the total number of proteins present in a group, how many copies exist between each species, the protein accession and name.
DOI: 10.6084/m9.figshare.c.3617675_d9
title: MOESM4 of Comparison of the protein-coding gene content of Chlamydia trachomatis and Protochlamydia amoebophila using a Raspberry Pi computer

description: Additional file 4. Protein Families (45). Lists OrthoMCLortholog groups when using a BLOSUM45 matrix.
DOI: 10.17863/cam.51196
title: Data supporting "Graphene-passivated nickel as an efficient hole-injecting electrode for large area organic semiconductor devices"

description: Figure 1: (d) Raman spectrum of few-layer graphene on Ni. (e) XPS of Ni 2p3/2 region of sputtered Ni (Ni/NiOx) and Ni after multilayer graphene growth (Ni/FLG), with peak fitting indicating metallic nickel (NiM) and nickel oxide (NiOx). (f) Magnetic moment measured at room temperature by DC-mode SQUID magnetometry of graphene-passivated Ni films for magnetic fields parallel and perpendicular to the plane of the film. Figure 2: (b) Comparison of hole injection into F8BT from graphene-passivated Ni and PEDOT:PSS bottom contacts, each using a top contact of MoO3 / Au. (c) Binding energy, referenced to the Fermi level, measured on a Ni/FLG sample by means of UPS (excitation light with energy = 21.21 eV). (d) Hole injection into P3HT from graphene-passivated Ni, with MoO3 /Au top contact. Figure 3: Current density hysteresis as a function of voltage for hole injection into F8BT using (a) unprotected sputtered Ni electrodes and (b) graphene-passivated Ni.
DOI: 10.4228/zalf.2009.128
title: Weather Data 2009, Muencheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz-Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type. In 2009, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm)
DOI: 10.17863/cam.7149
title: Research data supporting "Obesity and Insulin Resistance are Associated with Reduced Activity in Core Memory Regions of the Brain"

description: These are the behavioural results, bloods and betas from peak voxels during different tasks.
DOI: 10.17863/cam.90531
title: Research Data for "A transcriptomic comparison of nectar spur development in Linaria vulgaris and gibba development in Antirrhinum majus"

description: Nectar spurs (tubular outgrowths of floral organs) have long fascinated biologists. However, given that no model species possess nectar spurs, there is still much to learn about their development. In this study we combined morphological analysis with comparative transcriptomics to gain a global insight into the morphological and molecular basis of spur outgrowth in Linaria. Whole transcriptome sequencing was performed on two closely related species at three key developmental stages, one with a spur (Linaria vulgaris), and one without a spur (Antirrhinum majus). A list of spur-specific genes was selected, on which we performed a gene enrichment analysis. Results from our RNA-seq analysis agreed with our morphological observations. At an early stage, genes associated with cell division are highly expressed in the developing spur. At a later stage in spur development, genes associated with cell wall remodelling are expressed. Our list of spur-specific genes was enriched for genes connected to the plant hormones cytokinin, auxin and gibberellin. We present a global view of the genes involved in spur development in L. vulgaris, and define a suite of genes which are specific to spur development. This work provides a catalogue of candidate genes for spur outgrowth and development in L. vulgaris which can be investigated in future studies. The raw reads and the assembled transcriptomes are available from https://www.ebi.ac.uk/ena with the project accession PRJEB52140. “Lv_trinity-clusters-0.5_withheader.txt” shows which assembled transcripts (trinityID) belong to each gene (corsetID) when clustered by corset (Corset v.1.07; https://github.com/Oshlack/Corset) with distance parameter 0.5. “Lv_trinity-counts-0.5_replicates_renamed.txt” includes the read counts for all the samples per each gene (corsetID). In the sample names, “rA”, “rB”, “rC” and “rD” are the replicate IDs; “V” refers to ventral tissues and “D” refers to dorsal tissues; “Inter” refers to the intermediate stage; “Early” and “Late” refer to the early and late stages in the development.
DOI: 10.17863/cam.65175
title: Research data supporting “Routes To Cubic Ice Through Heterogeneous Nucleation”

description: See README file for a detailed description of this dataset. It contains all input files to generate the trajectories, along with all data and code to generate the figures, and analysis code for the water contact-layer and substrate similarity calculations. There are six subdirectories: 1) structures: Database of systems simulated 2) lammps: LAMMPS input files for simulations 3) sw: stillinger-weber files for LAMMPS simulations 4) displace: Database of systems simulated for “robustness” test under random displacement 5) xy_analysis: code for two-dimensional structure and similarity calculations 6) data_and_plotting: data and code to recreate plots in the paper
DOI: 10.17863/cam.84362
title: Data for "How does the oxidation and reduction time affect the chemical looping epoxidation of ethylene?"

description: Data divided into folders accordingly to each published figure. Containing data from experiments in a packed bed, measured with an FTIR, as well as material characterisation (XRD and SEM)
DOI: 10.17863/cam.31189
title: Video Supplement supporting the Article: New Caledonian crows plan for specific future tool use

description: This video is the supporting information video for the paper: New Caledonian crows flexibly plan for specific future tool use. Data was collected during the field season 2018 in New Caledonia. It shows an individual being tested in a future planning paradigm. Crows are given alternating trials condition 3 and 4, where they see the platform apparatus or the dispenser apparatus baited with food, and then are moved to the next door compartment, where, 5 minutes later, they are presented with the tool presentation box containing three tools, a distractor and low value apple. To gain the meat the crows need to choose a stone and the hook, so they can take this tool to the apparatus in the next door compartment 10 minutes later.
DOI: 10.6084/m9.figshare.c.3617723_d3
title: MOESM1 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 1. groups.txt. Predicted protein families (groups) output by OrthoMCL for C. tepidum and P. phaeoclathratiforme UniProt protein sets.
DOI: 10.6084/m9.figshare.c.3617657_d16
title: Additional file 12: of Identification of the BRD1 interaction network and its impact on mental disorder risk

description: Metadata and statistics of integrative ChIP-seq and expression analysis. This file contains three Excel spreadsheets. Spreadsheet 1 contains information on the number of genes common to both the exon expression array and ChIPseq analyses. Spreadsheets 2 and 3 include statistical and permutation tests concerning enrichment of DEGs among BRD1 PTGs. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3617723_d4
title: MOESM17 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 17. 1_cp_cct_x_cp_ppb.pl. Perl script used to identify the protein families containing one copy in C. tepidum and multiple copies in P. phaeoclathratiforme from UniProt.
DOI: 10.6084/m9.figshare.c.3617723_d5
title: MOESM18 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 18. 1_cp_ppb_x_cp_cct.pl. Perl script used to identify the protein families containing one copy in P. phaeoclathratiforme and multiple copies in C. tepidum from UniProt.
DOI: 10.6084/m9.figshare.c.3617723_d6
title: MOESM16 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 16. multi_cp_both_spp.pl. Perl script used to identify the protein families with more than one copy for both species from UniProt.
DOI: 10.6084/m9.figshare.c.3617723_d7
title: MOESM4 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 4. ensembl_cct.fa. The Fasta file containing the genome-wide protein set of Chlorobium tepidum TLS from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617744_d1
title: Additional file 2: Figures S1 and S2. of No evidence of prenatal diversifying selection at locus or supertype levels in the dog MHC class II loci

description: Merging cost showing the amount of variance within clusters in Ward’s method. This information was used in deciding the number of supertype clusters in DLA-DRB1 (Figure S1) and DLA-DQB1 (Figure S2) loci. (ZIP 3 kb)
DOI: 10.6084/m9.figshare.c.3617723_d8
title: MOESM6 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 6. ensembl_groups.txt. Predicted protein families (groups) output by OrthoMCL for C. tepidum TLS and P. phaeoclathratiforme BU-1 Ensembl Genomes protein sets.
DOI: 10.6084/m9.figshare.c.3617744_d2
title: Additional file 4: Table S2. of No evidence of prenatal diversifying selection at locus or supertype levels in the dog MHC class II loci

description: Supertype classification allele data and all alleles in the dog family data. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3617753_d1
title: Additional file 2: of Evolution in an extreme environment: developmental biases and phenotypic integration in the adaptive radiation of antarctic notothenioids

description: Tree file for notothenioids. (TXT 87.6 kb)
DOI: 10.17863/cam.23316
title: Dataset supporting "Fully Printed Organic-Inorganic Nanocomposites for Flexible Thermoelectric Applications"

description: This data is collected from the labs of Device Materials Group, Department of Materials Science and Metallurgy, University of Cambridge, in which the measurements were taken between October 2016 to March 2018. The data contains the EDX spectra, XRD pattern, thermoelectric properties measurements, flexing test measurements, and sample dimension measurements.
DOI: 10.6084/m9.figshare.c.3617723_d10
title: MOESM11 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 11. ensembl_1_cp_cct_x_cp_ppb.pl. The Perl script used to identify the protein families containing 1 copy in C. tepidum and multiple copies in P. phaeoclathratiforme from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617723_d9
title: MOESM2 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 2. C_tepidum.fa. The genome-wide protein set of Chlorobium tepidum TLS in Fasta format, downloaded from UniProt.
DOI: 10.6084/m9.figshare.c.3617744_d3
title: Additional file 3: Figures S3 and S4. of No evidence of prenatal diversifying selection at locus or supertype levels in the dog MHC class II loci

description: Supertype clustering trees for the canine DLA-DRB1 (Figure S3) and DLA-DQB1 (Figure S4) loci with allele names included. The supertype clusters are coloured differently. (ZIP 12Â kb)
DOI: 10.17863/cam.104076
title: Design Space Visualization (DS-Viz) example dataset

description: This dataset contains solutions for a game-based design task using the game Poly Bridge 2. The data made available in this dataset comprises solutions from four participants who took part in a lab-based experiment and 100 player solutions that were submitted to the game's online gallery. The experimental design and protocol can be found on (https://osf.io/zavxc). The four participants whose solutions are reported here were excluded from the main experiment sample because they have had played the game previously, but their solutions are still valid to the purpose of the creation of the design space visualisations. Dataset structure: this dataset includes different sheets with information that is used in the DS-Viz method. The sheets are the following: - data: sheet with the main pool of data, with the evaluation of each solution. - ColorScheme: sheet with the color information for each participant/gallery solutions. - Gower_Weight: sheet with the specification of each dimensions' weights for the Gower distance calculation. - Jaccard_Weight: sheet with the specification of the Jaccard distance weights. - dimensions: detailed explanation of each dimension that are used to characterise the solutions.
DOI: 10.17863/cam.28046
title: The effect of 6h B2AR agonist fenoterol treatment on the BMDM proteome

description: The full list of detected protein abundances in bone marrow-derived macrophages, treated with or without 10uM fenoterol for 6h
DOI: 10.17863/cam.88687
title: Research Data supporting "Characterisation of mAbs against Klebsiella pneumoniae type 3 fimbriae isolated in a target-independent phage display campaign"

description: THE dataset contains genome sequences of Klebsiella pneumoniae strains from a global panel of clinical isolates collected in 2012.
DOI: 10.5281/zenodo.14442074
title: Evaluating Moss Diversity and Biomass for Sustainable Harvesting Methods in Semi-Arid Forests of Türkiye
DOI: 10.5281/zenodo.14442075
title: Evaluating Moss Diversity and Biomass for Sustainable Harvesting Methods in Semi-Arid Forests of Türkiye
DOI: 10.17863/cam.69629
title: Research data supporting "Laboratory protocols for measuring and reporting the performance of luminescent solar concentrators"

description: Data files contain the raw data reported in graphs in the electronic supporting information. The file "Data_power input.txt" contains the measured output power of the light source incident on the illuminated surface area of the LSC, Pin(λ), as shown in Figure S1. Columns 1 and 2 are wavelength (nm) and optical power (W m-2 nm-1) data, respectively. The file "Data_power ouput.txt" contains the measured output power of for a single edge of an LSC, Pout,1(λ), as shown in Figure S3. Columns 1 and 2 are wavelength (nm) and optical power (W m-2 nm-1) data, respectively. The file "Data_absorbance.txt" contains the measured UV/vis absorption spectrum for a representative luminescent solar concentrator (LSC) as shown in Figure S5. Columns 1 and 2 are wavelength (nm) and absorbance (a.u.) data, respectively. The file "Data_current-voltage.txt" contains the measured current-voltage curve for a photovoltaic cell attached to a single edge of an LSC. Columns 1 and 2 are voltage (V) and current (mA) data, respectively.
DOI: 10.17863/cam.47899
title: Research data and code supporting "Rideaux & Welchman (2020) But still it moves: static image statistics underlie how we see motion - Journal of Neuroscience"

description: This repository contains the data and code presented in "Rideaux & Welchman (2020) But still it moves: static image statistics underlie how we see motion - Journal of Neuroscience". Data includes the trained MotionNet neural network presented in the manuscript, example images used to train MotionNet, and the results from the psychophysical experiment. Code includes scripts used to train and test MotionNet. See the readme.txt file contained in the data_and_code folder for more information.
DOI: 10.15468/dl.qphkcz
title: Occurrence Download

description: A dataset containing 66795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)",
 "Country is New Caledonia",
 "IucnRedListCategory is one of (CR, EN, VU, NT)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 66795 records from 272 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.8284
title: Research data supporting Three-Dimensional Visualization of the Interaction of a Vortex Ring with a Stratified Interface

description: Data associates with the paper "Three-Dimensional Visualization of the Interaction of a Vortex Ring with a Stratified Interface," which has been accepted for publication in the Journal of Fluid Mechanics. The work investigates the velocity field evolution of a vortex ring impacting a stratified interface. The 3D velocity field data is stored in a NetCDF3 file format.
DOI: 10.17863/cam.25376
title: Data supporting "Entrainment model for fully-developed wind farms: Effects of atmospheric stability and an ideal limit for wind farm performance"

description: Matlab files and readme.txt with data to produce figures in paper.
DOI: 10.6084/m9.figshare.c.3617723_d16
title: MOESM13 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 13. unique_cct.pl. Perl script used to identify the protein families unique to C. tepidum from UniProt.
DOI: 10.6084/m9.figshare.c.3617759_d6
title: Additional file 8: Table S8. of Genetic analysis of phytoene synthase 1 (Psy1) gene function and regulation in common wheat

description: Major metabolic pathways and candidate genes associated with Psy1 down-regulation. (XLSX 10.1Â kb)
DOI: 10.6084/m9.figshare.c.3617777_d1
title: Additional file 2: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Codebook. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3617723_d17
title: MOESM7 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 7. ensembl_ unique_cct.pl. The Perl script used to identify the protein families unique to C. tepidum from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617723_d18
title: MOESM14 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 14. uniqe_ppb.pl. Perl script used to identify the protein families unique to P. phaeoclathratiforme from UniProt.
DOI: 10.6084/m9.figshare.c.3617759_d8
title: Additional file 9: Table S9. of Genetic analysis of phytoene synthase 1 (Psy1) gene function and regulation in common wheat

description: Summary of silent mutations in Psy1 identified by TILLING. (XLSX 11.7Â kb)
DOI: 10.6084/m9.figshare.c.3617762_d5
title: MOESM1 of RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

description: Additional file 1: File S1. The A. nidulans genes transcriptionally modulated post transfer from fructose to SEB.
DOI: 10.6084/m9.figshare.c.3617777_d2
title: Additional file 3: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Acceptance data. (CSV 6 kb)
DOI: 10.6084/m9.figshare.c.3617723_d19
title: MOESM5 of A comparison of the protein-coding genomes of two green sulphur bacteria, Chlorobium tepidum TLS and Pelodictyon phaeoclathratiforme BU-1

description: Additional file 5. ensembl_ppb.fa. The Fasta file containing the genome-wide protein set of Pelodictyon phaeoclathratiforme BU-1 from Ensembl Genomes.
DOI: 10.6084/m9.figshare.c.3617777_d3
title: Additional file 10: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Demographic data. (CSV 4 kb)
DOI: 10.6084/m9.figshare.c.3617777_d4
title: Additional file 12: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Questionnaire analysis. (DO 10 kb)
DOI: 10.6084/m9.figshare.c.3617783_d1
title: Additional file 1: Table S1. of Differential diagnostic value of CD5 and CD117 expression in thoracic tumors: A large scale study of 1465 non-small cell lung cancer cases

description: Antibodies applied in this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3617762_d7
title: MOESM6 of RNAseq reveals hydrophobins that are involved in the adaptation of Aspergillus nidulans to lignocellulose

description: Additional file 6: File S2. The GO terms over-represented in the lists of gene up or down regulated post transfer from fructose to SEB for 6 h.
DOI: 10.15468/dl.np5grm
title: Occurrence Download

description: A dataset containing 478 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Naemorhedus goral (Hardwicke, 1825)"
 ]
}

 The dataset includes 478 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3617777_d6
title: Additional file 4: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Contact data â   sensors filtered. (CSV 5 kb)
DOI: 10.6084/m9.figshare.c.3617777_d7
title: Additional file 7: of Contact diaries versus wearable proximity sensors in measuring contact patterns at a conference: method comparison and participantsâ   attitudes

description: Contact data â   survey matched to sensors. (CSV 5 kb)