cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.32082
title: Supporting Data: Reporting Phenotypes In Model Organisms When Considering Body Size As A Potential Confounder.

description: This directory contains the data and associated scripts used to generate the figures  in the manuscript "Reporting phenotypes in model organisms when considering body size as a potential confounder." submitted to the Journal of Biomedical Semantics
DOI: 10.5281/zenodo.50037
title: Datosets Sjr

description: Datos obtenidos de SJR
DOI: 10.5281/zenodo.50097
title: Dataset From "Employing Hidden Markov Models To Assess The Genetic Content Of Genome Assemblies"

description: Dataset used to reach the conclusions in "Employing hidden Markov models to assess the genetic content of genome assemblies".
DOI: 10.5281/zenodo.50108
title: Anthropoid Morphometric And Phylogenetic Data, With R Replication Code.

description: This repository contains four files: 1) a NEXUS phylogeny of 100 anthropoid primates; 2) a CSV text file of anthropoid primate lower molar areas, body mass, and primary dietary category; 3) a CSV text file of modern human lower molar area proportions; and, 4) an R script containing replication code for fitting Bayesian phylogenetic generalized linear mixed models to the morphometric data. These files are associated with the paper "The Evolution of Anthropoid Molar Proportions" in BMC Evolutionary Biology (2016).
DOI: 10.5281/zenodo.50123
title: Phenotypes Of Merinoland Lambs And F1 Crosses

description: Phenotypes (Carcasse and meat traits) of Merinoland lambs and F1 crosses
DOI: 10.5281/zenodo.50124
title: Phased (Reconstructed) Haplotypes

description: Phased (reconstructed) haplotypes of Merinoland lambs and F1 crosses
DOI: 10.5281/zenodo.50125
title: Genotypes Of Merinoland Sheep, Lambs And F1 Crosses

description: HD (50K) SNP panel and LD (384) SNP panel of Merinoland sheep, lambs and F1 crosses
DOI: 10.5281/zenodo.50151
title: Bioinformatic Jobs

description: This is a list of Bioinformatics Jobs posts in 2015-2016
DOI: 10.6084/m9.figshare.3547350
title: Appendix A. Species list and life-forms.

description: Species list and life-forms.
DOI: 10.6084/m9.figshare.3549657.v1
title: Appendix E. Intraspecific changes in fish mass in 61 species.

description: Intraspecific changes in fish mass in 61 species.
DOI: 10.13012/b2idb-3661776_v2
title: Data for "Mislabeling of an Invasive Vine (Celastrus orbiculatus) as a Native Congener (C. scandens) in Horticulture"

description: Data used for Zaya et al. (2018), published in Invasive Plant Science and Management DOI 10.1017/inp.2017.37, are made available here. There are three spreadsheet files (CSV) available, as well as a text file that has detailed descriptions for each file ("readme.txt"). One spreadsheet file ("prices.csv") gives pricing information, associated with Figure 3 in Zaya et al. (2018). The other two spreadsheet files are associated with the genetic analysis, where one file contains raw data for biallelic microsatellite loci ("genotypes.csv") and the other ("structureResults.csv") contains the results of Bayesian clustering analysis with the program STRUCTURE. The genetic data may be especially useful for future researchers. The genetic data contain the genotypes of the horticultural samples that were the focus of the published article, and also genotypes of nearly 400 wild plants. More information on the location of the wild plant collections can be found in the Supplemental information for Zaya et al. (2015) Biological Invasions 17:2975–2988 DOI 10.1007/s10530-015-0926-z. See "readme.txt" for more information.
DOI: 10.13012/b2idb-5437353_v1
title: Linking landscape composition to predator-specific nest predation requires examining multiple landscape scales

description: Data were used to analyze patterns in predator-specific nest predation on shrubland birds in Illinois as related to landscape composition at multiple landscape scales. Data were used in a Journal of Applied Ecology research paper of the same name. Data were collected between 2011 and 2014 at sites in east-central and northeastern Illinois, USA as part of a Ph.D. research project on the relationship between avian nest predation and landscape characteristics, and how nest predation affects adult and nestling bird behavior.
DOI: 10.22021/bcldntz201711
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-11 – N-Triples
DOI: 10.22021/bcldrdfz201711
title: The Linked Open British National Bibliography – Forthcoming Books. 2017-11 – RDF/XML
DOI: 10.22021/bsldntz201711
title: The Linked Open British National Bibliography – Serials. 1950/2017-11 – N-Triples
DOI: 10.22021/bsldrdfz201711
title: The Linked Open British National Bibliography – Serials. 1950/2017-11 – RDF/XML
DOI: 10.5281/zenodo.32144
title: Md Simulation Trajectory And Related Files For Popc Bilayer With 340Mm Nacl (Berger Model Delivered By Tieleman, Ffgmx Ions, Gromacs 4.5)

description: Equilibrated POPC lipid bilayer simulation ran with Gromacs 4.5, Berger force field delivered by Peter Tieleman (http://wcm.ucalgary.ca/tieleman/downloads), double bonds updated in http://dx.doi.org/10.1021/jp065424f, ffgmx parameters for ions, 50ns, T=298K, 128 POPC molecules, 7202 water molecules, 44 Na molecules, 44 Cl molecules. This data is used in the NMRLipids II project (nmrlipids.blospot.fi).
DOI: 10.5281/zenodo.32145
title: Data For "Investigation Of Local Strain Rate Sensitivity In Dual-Phase Ti Alloys By Nanoindentation"

description: Data for "Investigation of local strain rate sensitivity in dual-phaes Ti alloys by nanoindentation"

Tea-Sung Jun1, David E.J. Armstrong2 and T. Benjamin Britton1<br>
1. Department of Materials, Imperial College London, Prince consort Road, London, SW7 2AZ, UK<br>
2. Department of Materials, University of Oxford, Parks Road, Oxford, OX1 3PH, UK

--

This nanoindentation data folder contains 3 subfolders:<br>
(1) Raw indentation data obtained from TestWorks<br>
(2) Data for Figure 4<br>
(3) Data for Figure 5

--

In the subfolder (1), each file name indicates Material_Grain orientation_Indentation strain rate (e.g. 6242_H_0001). <br>
For the subfolders (2) and (3), readers can plot the graphs either using Excel, OriginPro or other software. <br>
Note that we used the OriginPro to generate all the graphs in this article.

--

If readers need further information, please feel free to contact: t.jun@imperial.ac.uk or terryjun83@gmail.com (Tea-Sung (Terry) Jun)
DOI: 10.5281/zenodo.32173
title: Md Simulation Trajectory And Related Files For Popc Bilayer With 340Mm Cacl_2 (Berger Model Delivered By Tieleman, Ffgmx Ions, Gromacs 4.5)

description: Equilibrated POPC lipid bilayer simulation ran with Gromacs 4.5, Berger force field delivered by Peter Tieleman (http://wcm.ucalgary.ca/tieleman/downloads) double bonds updated in http://dx.doi.org/10.1021/jp065424f, ffgmx parameters for ions, 50ns, T=298K, 128 POPC molecules, 7157 water molecules, 44 Na molecules, 88 Cl molecules. This data is used in the NMRLipids II project (nmrlipids.blospot.fi).
DOI: 10.5281/zenodo.32184
title: Protein Stable Isotope Fingerprinting (P-Sif): Multidimensional Protein Chromatography Coupled To Stable Isotope-Ratio Mass Spectrometry

description: Carbon stable isotope ratios (δ<sup>13</sup>C) for protein fractions extracted from a mixture of cultured cells of <em>Allochromatium vinosum </em>DSM 180 and <em>Synechocystis</em> sp. PCC6803, as well as from extracts of each pure culture.

Citation: Mohr W, Tang T, Sattin SR, Bovee RJ, Pearson A. (2014) Protein stable isotope fingerprinting (P-SIF): Multidimensional protein chromatography coupled to stable isotope-ratio mass spectrometry. Analytical Chemistry 86, 8514-8520.

Contact:  Ann Pearson (pearson@eps.harvard.edu)
DOI: 10.5281/zenodo.32186
title: Protein Stable Isotope Fingerprinting (P-Sif): Mahoney Lake (Canada) 7-M Biomass

description: Carbon isotope data for proteins extracted from a biomass pellet from a sulfide-oxidizing phototroph layer (7m); Mahoney Lake, British Columbia, Canada.
DOI: 10.5281/zenodo.32187
title: Protein Stable Isotope Fingerprinting (P-Sif): Chocolate Pots (Yellowstone) Biomass

description: Stable carbon isotope data for proteins extracted from a Yellowstone microbial mat, Chocolate Pots hot springs.
DOI: 10.5281/zenodo.32188
title: Protein Stable Isotope Fingerprinting (P-Sif): Pure Culture Samples, Under Various Growth Substrates

description: Carbon stable isotope data for proteins extracted from a variety of pure culture samples.
DOI: 10.5281/zenodo.32288
title: Ipdps Experiment Traces Updated

description: IPDPS experiment traces, generation script fixed
DOI: 10.5281/zenodo.50211
title: Diapason S1 Interferogram Japan Earthquakes April 2016

description: Sentinel-1 interferogram generated in the cloud on the Geohazards Exploitation Platform (GEP), the initiative developed by the European Space Agency (ESA).

The interferogram was generated on the platform and shows the ground displacement caused by the earthquakes that struck Japan in mid-April 2016. Two major earthquakes caused significant damage in and around the city of Kumamoto, on the island of Kyushu in southwest Japan. The first quake occurred on Thursday 14 April with a magnitude of 6.2 and was followed by several aftershocks until the bigger 7.0 magnitude quake on Friday 15 April which led to the earlier, smaller event to be reclassified as a foreshock. Both events are included in the period covered by the interferogram made with two Sentinel-1 images: one on 08 April (prior to the events), the other on 20 April 2016.

The epicentres of the earthquakes were relatively close to the surface, at a depth of about 10 kilometres. According to the USGS the shallow depth and faulting mechanism of these earthquakes indicate that they occurred on a crustal fault within the upper Eurasia plate. In contrast to this recent sequence of shallow earthquakes, most seismicity in the Kyushu region is related to the subduction of the Philippine Sea plate at depth.

The two earthquakes killed more than 40 people and caused several structures to collapse. The resulting landslides have destroyed roads and communities.
DOI: 10.5281/zenodo.50228
title: Dendritic Cell Subsets In Oral Mucosa Of Allergic And Healthy Subjects

description: <strong>Abstract</strong>

Immunohistochemistry was used to identify, enumerate, and describe the tissue distribution of Langerhans type (CD1a and CD207), myeloid (CD1c and CD141), and plasmacytoid (CD303 and CD304) dendritic cell subsets in oral mucosa of allergic and non-allergic individuals. Allergic individuals have more CD141+ myeloid cells in epithelium and more CD1a+ Langerhans cells in the lamina propria compared to healthy controls, but similar numbers for the other DC subtypes. Our data are the first to describe the presence of CD303+ plasmacytoid DCs in human oral mucosa and a dense intraepithelial network of CD141+ DCs. The number of Langerhans type DCs (CD1a and CD207) and myeloid DCs (CD1c), was higher in the oral mucosa than in the nasal mucosa of the same individual independent of the atopic status.
DOI: 10.5281/zenodo.50325
title: Data Set For Survey Questionnaires To Assess Self-Medication Practices

description: This is pubmed and web of science data sets for a review on self medication survey questionnaires.
DOI: 10.5281/zenodo.50409
title: Raw Data Employed To Perform The Algorithm Used In The Scientific Paper: "Kinematic Reconstruction Of The Upper Limb Joints In Planar Robot-Aided Therapies

description: These files contain the raw data (acquired from different users) necessary to perform the algorithm introduced in the scientific paper:

PAPER: Kinematic reconstruction of the upper limb joints in planar robot-aided therapies

Authors: Arturo Bertomeu-Motos, Ricardo Morales, Jorge A. Díez, Luis D. Lledó, Francisco J. Badesa, Nicolas Garcia-Aracil

Conference: ICORR 2015, IEEE 14th International Conference on Rehabilitation Robotics, August 2015

<br>
All the orientations are expressed regarding the origin of the robot.

a) Robot Joints: Planar robot joints acquired during the experiment, in radians (j1-j3 columns). This robot is referenced in the paper.<br>
b) Quaternion IMU shoulder: Unit quatenion acquired through a 9DoFs Inertial Measurement Unit (IMU) developed by Shimmer (qw1-qz columns).<br>
c) Upper arm acceleration: Acceleration acquired from a 3-axial accelerometer developed by Shimmer (X-Z columns). It is normalized regarding the gravity (9.81m/s^2).<br>
d) Quaternion Tracker onto Shoulder: unit quaternion of the tracker placed onto the shoulder acquired from the tracking camera V120:trio developed by Optitrack (qw1-qz columns).<br>
e) Quaternion Tracker onto Upper Arm: unit quaternion of the tracker placed onto the upper arm acquired from the tracking camera V120:trio developed by Optitrack (qw1-qz columns).
description: This work is part of the project "Adaptive Multimodal Interfaces to Assist Disabled People in Daily Activities" funded by the European Commission's Horizon 2020 Framework Programme, Call number ICT-22-2014: Multimodal and Natural computer interaction, under Grant Agreement No 645322.
DOI: 10.5281/zenodo.50429
title: Mr.Banks 2013 Experiment Dataset

description: The data stored here come from a lab-in-the-field experiment, called Mr. Banks, where volunteers are given a controlled set of financial information -based on real data from worldwide financial indices- and they are required to guess whether the market price would go up or  down in each situation. Data is used to explore basic statistical traits, behavioural biases and emerging strategies. More details can be found in the following publication:<br>
 <br>
Mario Gutiérrez-Roig, Carlota Segura, Jordi Duch and Josep Perelló. Market Imitation and Win-Stay Lose-Shift strategies emerge as unintended patterns in market direction guesses. PLoS ONE. (2016)<br>
 <br>
For any question or comment please contact any author of the paper. You can also find more information of the prohect at www.mr-banks.net
DOI: 10.6084/m9.figshare.3550521.v1
title: Appendix A. ANOVA testing the effect of region (northern vs. southern) and treatment (grazed vs. control) on the field densities of snails per Spartina alterniflora plants that were previously grazed by herbivores for 28 days or not (grazer-free controls).

description: ANOVA testing the effect of region (northern vs. southern) and treatment (grazed vs. control) on the field densities of snails per Spartina alterniflora plants that were previously grazed by herbivores for 28 days or not (grazer-free controls).
DOI: 10.6084/m9.figshare.3550725
title: Appendix B. Interpretation of time-series intervention analysis parameters.

description: Interpretation of time-series intervention analysis parameters.
DOI: 10.1184/r1/6459449.v1
title: BOLD5000

description: Brain, Object, Landscape Dataset<br><br>Vision science - particularly machine vision - is being 
revolutionized by large-scale datasets. State-of-the-art artificial 
vision models critically depend on large-scale datasets to achieve high 
performance. In contrast, although large-scale learning models (e.g., AlexNet) have 
been applied to human neuroimaging data, the stimuli for such 
neuroimaging experiments include significantly fewer images. The small size of these stimulus sets also translates to limited image 
diversity. Here we dramatically increase the stimulus set size deployed 
in an fMRI study of visual scene processing. We scanned 
four participants in a slow-evented related design that incorporated 
4,916 unique scenes. Data was collected over 16 sessions, 15 of which 
were task-related sessions, plus an additional session for acquiring 
high resolution anatomical scans. In 8 of the 15 task-related sessions, a
 functional localizer was run in order to independently define 
scene-selective cortex. In each scanning session, participants filled 
out a questionnaire (Daily Intake) about their daily routine, including:
 current status regarding food and beverage intake, sleep, exercise, ibuprofen,
 and comfort in the scanner. During BOLD scanning, physiological data 
(heart rate and respiration) was also acquired.<br>The
 experiment including 4,803 images presented on a single trial 
throughout the experiment, and 112 images repeated four times, and one 
image repeated three times, throughout the experiment, yielding a total 
of 5,254 stimuli trials. The stimuli were drawn from three datasets: 1) 
1000 images from Scene Images (250 scene categories, based on SUN 
categories, with four exemplars each); 2) 2000 images from the COCO 
dataset; and 3) 1916 images from the ImageNet dataset. In the 
experiment, images were presented for 1 second, with 9 seconds of 
fixation between trials. Participants were asked to judge whether they 
liked, disliked, or were neutral about the image.<br>In sum,
 our dataset is unique in three ways: it is 1) significantly larger than
 existing slow-event neural datasets by an order of magnitude, 2) 
extremely diverse in stimuli, 3) considerably overlapping with existing 
computer vision datasets. Our large-scale dataset enables novel neural 
network training and novel exploration of benchmark computer vision datasets through
 neuroscience. Finally, the scale advantage of our dataset and the use 
of a slow event-related design enables, for the first time, joint 
computer vision and fMRI analyses that span a significant and diverse 
region of image space using high-performing models. <br><br>Please refer to our website for more details and future news and releases: BOLD5000.org<br>
DOI: 10.13012/b2idb-5835198_v1
title: Python code for cost estimation of harvesting uranium from seawater and geospatial comparison of adsorbent performance
DOI: 10.21942/uva.5697034
title: Seating capacity cinemas EU West 1955

description: This spreadsheet contains data on the number of cinema seats per inhabitant of 26 (Western) European countries in 1955, taken from the following report: UNESCO, Statistics on film and cinema 1955-1975, 1981: pp. 67-70.
DOI: 10.25380/iastate.6333104.v1
title: Land Use and Cropping Recommendations For Various Soil Types in Iowa, 1937-1938.

description: This dataset was transcribed and analyzed to support an in-press article which will be published in the <i>Journal of Soil and Water Conservation</i> in Nov/Dec 2018.<br><br>The dataset contains transcribed tables from the county pamphlets “How To Use Your Soil And Keep It Too” distributed by county agricultural planning committees in 1937/1938. There are 90 pamphlets available. One table was included in each pamphlet and was titled “Land Use and Cropping Recommendations For Various Soil Types.” The table included recommended crop rotations by soil type in the county. These tables were created by county agricultural planning committees. The values in the tables were committee recommendations for the types of crop rotations that would protect soils and provide suitable crop production. The dataset contains additional columns that evaluated the county agricultural planning committee recommendations. Two supporting datasets are provided to explain the column assignments using in the primary dataset.<br>
DOI: 10.5281/zenodo.1134393
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1134394
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1135199
title: Oerhörnchen Suchbegriffe Dezember 2017

description: Open Data: Suchbegriffe, die von Benutzer*innen auf www.oerhoernchen.de eingegeben wurden.
DOI: 10.5281/zenodo.1286284
title: Sci-Hub Downloads From Germany

description: This dataset contains Sci-Hub downloads from Germany from September 2015 to February 2016 and January 2017  to December 2017, split by month. It comprises filtered data from publicly available datasets, including missing data that was provided by Sci-Hub in May 2018. [1] [2] [3]

The ZIP-file contains 18 files of max. 25.5 MB.

 

Column 1: date and time (YYYY-MM-DD hh:mm:ss)

Column 2: DOI

Column 3: City

 

 

Dieser Datensatz enthält Sci-Hub Downloads aus Deutschland über den Zeitraum von September 2015 bis Februar 2016 und von Januar 2017 bis Dezember 2017, geteilt nach Monaten. Der Datensatz besteht aus gefilterten Daten von mehreren öffentlich zugänglichen Datensätzen, darunter fehlende Daten aus dem Jahr 2017, die von Sci-Hub im Mai 2018 nachgereicht wurden. [1] [2] [3]

Die ZIP-Datei enthält 18 Dateien von maximal 25,5 MB.

 

Spalte 1: Datum und Uhrzeit (JJJJ-MM-TT hh:mm:ss)

Spalte 2: DOI

Spalte 3: Stadt

 

 

[1] Bohannon, J., & Elbakyan, A. (2016). Data from: Who’s downloading pirated papers? Everyone [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.q447c

[2] Tzovaras, B. G. (2018). Sci-Hub Download Log Of 2017 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.1158301

[3] https://twitter.com/Sci_Hub/status/996925449577037824
DOI: 10.5281/zenodo.50350
title: Data From: Mothers Make A Difference: Mothers Develop Weaker Bonds With Immature Sons Than Daughters

description: Data for model calculation
DOI: 10.5281/zenodo.50439
title: Raw Data Employed To Perform The Algorithm Used In The Scientific Paper: "Kinematic Reconstruction Of The Human Arm Joints In Robot-Aided Therapies With Hermes Robot"

description: This file contains the raw data necessary to perform the algorithm introduced in the scientific paper:

PAPER: Kinematic reconstruction of the human arm joints in robot-aided therapies with Hermes robot

Authors: Arturo Bertomeu-Motos, Ricardo Morales, Luis D. Lledó, Jorge A. Díez, Jose M. Catalan, Nicolas Garcia-Aracil.

Conference: EMBC 2015, IEEE 37th International Conference in Medicine and Biology Society, August 2015.

Raw data acquired necessary to perform thee algorithm introduced in this paper.

a) Robot Joints: Robot joints generated to develop the simulation, in radians (j1-j7 colums). This robot is referenced in the paper.<br>
b) Direct Upper Limb Joints: Upper limb joints generated to develop the simulation, in radians (q1-q7 columns). This data is used to simulate the accelerometer value.
description: This work is part of the project "Adaptive Multimodal Interfaces to Assist Disabled People in Daily Activities" funded by the European Commission's Horizon 2020 Framework Programme, Call number ICT-22-2014: Multimodal and Natural computer interaction, under Grant Agreement No 645322.
DOI: 10.5281/zenodo.50484
title: Refractive Index Obtained From Thin Films Of Au-Ag Alloys

description: This is the optical dataset for Au-Ag alloys, obtained in the paper "Optical properties of Au-Ag alloys: An ellipsometric study" [Opt. Mater. Express 4 (2014) 403-410].
DOI: 10.5281/zenodo.50485
title: Neutrophil/Lymphocyte Ratio Has A Prognostic Value For Patients With Terminal Cancer

description: datasets
DOI: 10.5281/zenodo.583171
title: 10 Eadage Models Used For The Pao1 Kegg Pathways Case Study In Pathcore

description: ensemble Analysis using Denoising Autoencoders for Gene Expression<strong> </strong>(<strong>eADAGE</strong>) is an unsupervised feature construction algorithm developed by Tan et al. that uses an ensemble of neural networks (an ensemble of ADAGE models) to capture biological signatures embedded in the expression compendium. By initializing eADAGE with different random seeds, Tan et al. produced 10 eADAGE models that each extracted k=300 features from the compendium of genome-scale <em>P. aeruginosa</em> data.

eADAGE is described in Tan et al.'s "System-wide automatic extraction of functional signatures in <em>Pseudomonas aeruginosa</em> with eADAGE" (https://doi.org/10.1101/078659). The code to construct these 10 models is available in this repository: https://bitbucket.org/greenelab/eadage (see eADAGE_construction.sh).
description: {"references": ["Tan, J. et al. (2017). System-wide automatic extraction of functional signatures in Pseudomonas aeruginosa with eADAGE. https://doi.org/10.1101/078659"]}