cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24166656.v1
title: Grounded theory coding of interview transcriptions and observation notes

description: I used the combined observations, notes, and interview transcripts in subsequent grounded theory coding analysis. The grounded theory methodology extracts insights and theories from abstractions and narratives, using codes to flag incidence in the data (Urquhart, 2017). The analysis consists of six steps, producing initial codes, axial codes, selective codes, and emerging themes at each progressive stage of analysis (Braun & Clarke, 2012).Firstly, I familiarized and scrutinized raw data in their unprocessed forms, in this case consist of transcripts, recordings, and notes. This allows generation of initial, posteriori codes (as supposed to priori codes from the literature review) at the semantic and latent level of understanding. While semantic meaning can be revealed through narratives, the latent level of understanding requires additional consideration of non-verbal cues such as tones of speech (Swain, 2018). From the initial codes, I constructed axial codes and subsequently selective codes by categorization. The selective codes underline emerging themes and subthemes that project a synthesized response to the research question (Urquhart, 2017). During this process of categorization and pruning, I constantly reviewed codes and themes to eliminate redundancy.
DOI: 10.6084/m9.figshare.26355874.v1
title: Source Data files and Supplementary Data files of scNanoSeq-CUT&Tag

description: This item contains the Source Data files and Supplementary Data files of scNanoSeq-CUT&Tag: a single-cell long-read CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells.
DOI: 10.6084/m9.figshare.26868478.v1
title: Supplementary Material for: Vogt-Koyanagi-Harada-like uveitis secondary to pembrolizumab in metastatic gastric cancer: a case report and review of the literature

description: Introduction: Vogt-Koyanagi-Harada (VKH) disease is a multisystem syndrome characterized by uveitis and exudative retinal detachments in the absence of ocular trauma or surgery. Neurological and cutaneous manifestations can also occur. Prior case reports have associated immune checkpoint inhibitors with a VKH-like disease.
Case Presentation: A 64-year-old woman presented with three months of epigastric pain, and subsequent endoscopy showed a large mass in the gastroesophageal junction. Staging imaging showed an FDG-avid para-aortic node, making the disease stage IV, and she was treated with systemic therapy with FOLFOX. Molecular profiling showed HER2 amplification and PDL1 positivity, so trasutuzumab and pembrolizumab were added. PET and EGD with biopsies showed a complete radiologic and pathologic response to treatment. Chemotherapy was stopped, and she continued on trasutuzumab and pembrolizumab maintenance. After about 18 months of treatment with pembrolizumab, she presented with painful blurry vision in both eyes. Ophthalmologic evaluation showed panuveitis, serous retinal detachment, bilateral uveal edema, and secondary angle closure, consistent with VKH-like uveitis. She was treated with local and systemic corticosteroids. Pembrolizumab was assessed as the most likely causative agent and was discontinued. Her ophthalmologic exam improved, and her visual acuity returned to baseline. She continues on trastuzumab maintenance, and most recent imaging shows no evidence of disease.
Discussion: Oncologists should be aware of VKH-like disease as a possible immune-related adverse event and seek urgent ophthalmologic consultation when such symptoms arise.
DOI: 10.17632/n6jjyjbb76
title: CX-5461 potentiates imatinib-induced apoptosis in K562 cells by stimulating KIF1B expression

description: The selective RNA polymerase I inhibitor CX-5461 has been shown to be effective in treating some types of leukemic disorders. Emerging evidence suggests that combined treatments with CX-5461 and other chemotherapeutic agents may achieve enhanced effectiveness as compared to monotherapies. In the present study, we tested whether CX-5461 could potentiate the effect of imatinib in the human chronic myeloid leukemia cell line K562. Cells were divided into 3 treatment groups (with 3 independent biological replications in each group): control, imatinib (100 nM for 48 hr) alone, and imatinib+CX-5461 (100 nM for 48 hr). Genome-wide mRNA sequencing was performed.
DOI: 10.6084/m9.figshare.3560100.v1
title: Supplement 1. MATLAB source code of the metacommunity model.

description: File List metapop2.m (MD5: 2301818e83f5d85d6552796e5e6e9c99) Description The MATLAB function metapop2 integrates forward the two species metacommunity model under the various scenarios considered in the study, outputting the abundance in each patch of each species at each time step. Full details of the input and output arguments are given at the beginning of the file.
DOI: 10.17632/jfttfjn6tr
title: MQTTEEB-D: A Real-World IoT Cybersecurity Dataset for AI-Powered Threat Detection in MQTT Networks

description: This dataset accompanies the research article on MQTTEEB-D and is intended for public use in cybersecurity research. The MQTTEEB-D dataset is a practical real-world data set for intrusion detection improvement in Message Queuing Telemetry Transport (MQTT)-based Internet of Things (IoT) networks. In contrast to already existing datasets that are constructed on simulated network traffic, MQTTEEB-D is obtained from a real-time IoT deployment at the International University of Rabat (UIR), Morocco. Using MySignals IoT health sensors, Raspberry Pi 4, and an MQTT broker server, this dataset represents the actual complexity of the active IoT communication process, which synthetic data fails to offer. To narrow the gap between simulated and real-world attack scenarios, various cyberattacks including Denial of Service (DoS), Slow DoS against Internet of Things Environments (SlowITe), Malformed Data Injection, Brute Force, and MQTT publish flooding were carried out in real-time, permitting close monitoring of network traffic anomalies. The data was captured using Python wrapper for tshark (PyShark) and organized into multiple Comma-Separated Values (CSV) files. To ensure high data quality, we performed pre-processing steps, such as outlier removal, normalization, standardization, and class balance. Several processed forms (raw, cleaned, normalized, standardized, Synthetic Minority Over-sampling Technique (SMOTE)) applied for this dataset are provided, along with detailed metadata to facilitate ease of use in cybersecurity research. This dataset provides an opportunity for researchers to develop and validate intrusion detection models in a real-world MQTT environment - a critical ingredient in Artificial Intelligence (AI)-driven cybersecurity solutions for IoT networks. The dataset will support future research IoT security and anomaly detection domains.
DOI: 10.17632/w3wr7x8n2s
title: The Role of Principal Transformational Leadership Based on Cultural Moral Values in Strengthening Student Character 

description: The role of the principal is crucial to optimize the implementation of the student character strengthening program. Unfortunately, the role of the principal is experiencing obstacles because he has not found the appropriate form of role and approach to making the student character strengthening program effectively. Purpose: This study examines the principal's transformational leadership role based on a local cultural system. Methods: A qualitative approach is used in this study, the case study design with the subjects studied were school principals. Participants in this study include three principals, three senior teachers, one parent, and one cultural figure. Data was collected through in-depth interviews, participant observation, and documentation studies to achieve the research objectives. Data analysis employed a modified analytical analysis method. Meanwhile, the validity of the data was based on the level of credibility, transferability, dependence, and confirmability. Results: The study results prove that the principal's transformational leadership role with a local cultural approach has a positive impact on the optimization of character strengthening programs and positive changes in students' moral behavior. The study concludes that the transformational leadership role of local culture-based principals impacts optimizing student character strengthening programs.
DOI: 10.6084/m9.figshare.879664.v3
title: Video recording of freely diffusing 60 nm and 80 nm gold nanoparticles using dark field microscopy

description: Dark field recordings of 60 nm and 80nm gold particles which were diluted in essentially particle-free double distilled H2O. The temperature was 24 °C. The concentration was amounted to approximately 3x10^9 ml. The video file was captured with a Canon EOS 5D Mark II camera at 25 FPS mounted on a Olympus BX51 microscope (100-fold oil immersion objective) which was illuminated with a CytoViva dark field oil condenser. The video pixel size is 182 nm. <strong>This video is part of a puplication:</strong> <strong>Wagner, T., Lipinski, H.-G. & Wiemann, M., 2014. Dark field nanoparticle tracking analysis for size characterization of plasmonic and non-plasmonic particles. Journal of Nanoparticle Research, 16(5), p.2419. Available at: http://link.springer.com/10.1007/s11051-014-2419-x<br></strong>
DOI: 10.17632/5ttrnmvjjx
title: Tumors hijack erythropoiesis for myelopoiesis and immunosuppression

description: Despite the unprecedented success of immune checkpoint inhibitors (ICIs) as anti-cancer therapy, it remains a prevailing clinical need to identify additional mechanisms underlying ICIs therapeutic efficacy and potential drug resistance. Here, using lineage tracking in cancer patients and tumor-bearing mice, we demonstrate that erythroid progenitor cells lose their developmental potential and switch to the myeloid lineage. Single-cell transcriptome analyses reveal that, notwithstanding quantitative differences in erythroid gene expression, erythroid differentiated myeloid cells (EDMCs) are transcriptionally indistinguishable from their myeloid-originated counterparts. EDMCs possess multifaceted machinery to curtail T cell-mediated anti-tumor responses. Consequently, the EDMCs content within tumor tissues is negatively associated with T cell inflammation for the majority of solid cancers; moreover, EDMCs enrichment, in accordance with anemia manifestation, is predictive of poor prognosis in various cohorts of patients undergoing ICIs therapy. Together, our findings reveal a feed-forward mechanism by which tumors exploit anemia-triggered erythropoiesis for myeloid transdifferentiation and immunosuppression.
DOI: 10.17632/5xz8jrcmkb
title: Dataset of Viscosity of nanofluids and fluid base

description: Raw data of viscometer measurements
DOI: 10.17632/hk3cy5mfn4
title: Data for: Enterococcus faecium as a Salmonella surrogate in the thermal processing of wheat flour: influence of water activity at high temperatures

description: These two documents are raw data and analyzed data for two main parts of this study: water sorption isotherms of wheat flour at different temperatures, and microbial inactivation kinetics of Salmonella and Enterococcus faecium in wheat flour at three temperatures (75, 80 and 85°C) and three water activity levels (0.30, 0.45, and 0.60, measured at 25°C prior to heat treatments).
DOI: 10.17632/ssjxhyrtwc
title: PERCEPTRON-XFMS- A Web Server for X-ray Foot Printing with Mass Spectrometry Data Analysis

description: PERCEPTRON XFMS Code and Dataset
DOI: 10.17632/572tbr9y59
title: Data for: Distribution of pyrolytic polycyclic aromatic hydrocarbons across Triassic-Jurassic boundary in the Sichuan Basin, southwestern China: Evidence of wildfire occurrence outside the Central Atlantic Magmatic Province
DOI: 10.17632/vhkfgzmp4n
title: Dataset for the publication: Controlled autoignition inside an active pre-chamber using alternative fuels

description: The dataset covers the research data of the research paper "Controlled autoignition inside an active pre-chamber using alternative fuels" (DOI: 10.1016/j.applthermaleng.2024.125300) published in Applied Thermal Engineering. The data were measured on a thermodynamic four-stroke direct-injection spark-ignition single-cylinder engine with a compression ratio of 18.1 and equipped with an active pre-chamber. Diethoxymethane was applied as pre-chamber fuel to assess the applicability of the controlled autoignition of the pre-chamber charge. The performance of this combustion concept was compared to the application of methanol as pre-chamber fuel, which was ignited by a spark plug inside the pre-chamber. Primarily, variations of the relative air/fuel ratio in the exhaust gas were performed at an engine speed of 2000 1/min and a net indicated mean effective pressure of 12 bar. The application of diethoxymethane yielded a reliable autoignition of the pre-chamber charge, indicating no significant disadvantages in the combustion process compared to the methanol-fueled PC. The same maximum net indicated efficiency of 47% was achieved at a relative air/fuel ratio in the exhaust gas of 2.7.
DOI: 10.17632/3wwkcgn42r
title: Sub-microscopic magnetite may be ubiquitous in the lunar regolith of the high-Ti region

description: The data of "Sub-microscopic magnetite may be ubiquitous in the lunar regolith of the high-Ti region".
DOI: 10.6084/m9.figshare.21835308.v1
title: Development of processed low-sodium Maasdam cheese

description: ABSTRACT The article assesses the effect of different potassium emulsifying salts concentrations on physicochemical, colorimetric, and texture characteristics of processed cheese manufactured using Maasdam. Except for pH, physicochemical parameters remained unchanged, but the gradual substitution of sodium emulsifying salts with potassium-based salts influenced color and texture. Treatments with at least 50% potassium salts showed a reduction of at least 30% of sodium. The sodium decrease allows the product's classification as processed cheese with low-sodium content (&lt;140mg per 56.7g serving). The data obtained present substantial information that can help the dairy industries develop newly reduced-sodium products.
DOI: 10.6084/m9.figshare.7235021.v1
title: Supplementary Material for: Novel Neural Network Approach to Predict Drug-Target Interactions Based on Drug Side Effects and Genome-Wide Association Studies

description: <b><i>Aims:</i></b> We propose a novel machine learning approach to expand the knowledge about drug-target interactions. Our method may help to develop effective, less harmful treatment strategies and to enable the detection of novel indications for existing drugs. <b><i>Methods:</i></b> We developed a novel machine learning strategy to predict drug-target interactions based on drug side effects and traits from genome-wide association studies. We integrated data from the databases SIDER and GWASdb and utilized them in a unique way by a neural network approach. <b><i>Results:</i></b> We validate our method using drug-target interactions from the STITCH database. In addition, we compare the chemical similarity of the predicted target to known targets of the drug under consideration and present literature-based evidence for predicted interactions. We find drug combination warnings for drugs we predict to target the same protein, hinting to synergistic effects aggravating harmful events. This substantiates the translational value of our approach, because we are able to detect drugs that should be taken together with care due to common mechanisms of action. <b><i>Conclusion:</i></b> Taken together, we conclude that our approach is able to generate a novel and clinically applicable insight into the molecular determinants of drug action.
DOI: 10.17632/6fr3nw5mpc
title: Database of Animal Systematic Review Publications

description: This database compiles systematic reviews (SRs) of animal studies (i.e., reviews that focused exclusively on non-human animal research, or reviews that included animal studies along with human studies). This database was developed using a rigorous, systematic approach and it covers a broad range of research fields: preclinical research, toxicology, environmental health, and veterinary medicine. The goals of this database are to: (1) provide a comprehensive collection of animal study SRs to advance systematic review methods development; (2) enable researchers to avoid duplication of effort and, thus, reduce research waste by identifying published SRs of animal studies that may already address a research question; and (3) aid in the creation of evidence maps, usually designed as interactive figures of study characteristics. The SRs included in the database were identified using a comprehensive search strategy (see data) in MEDLINE (via PubMed), Embase (via Ovid), and Web of Science. The records included in the animal studies SR database meet the following eligibility criteria: 1. The reference aims to systematically review the literature. The title or abstract states this aim using terminology such as “literature review,” “literature overview,” “systematic review,” “systematic survey,” or “meta-analysis.” 2. The reference summarizes the results of studies in laboratory or experimental animals to investigate human or animal health. 3. The reference reports the eligibility criteria for the primary studies, specifies search terms, and the search is performed in at least one specified database/electronic source (e.g., PubMed). 4. A full text version of the reference is publicly available. There were no restrictions in language or publication date. Version 1.0 covers data through 13 February 2018 Version 1.1 covers data through 18 June 2019
DOI: 10.17632/mpgvj85rzf
title: Patients with PSOriasis and Suppurative Hidradenitis (PSOSH) share genetic risk factors and are at risk of increased morbidity - Supplementary Material

description: Patients with PSOriasis and Suppurative Hidradenitis (PSOSH) share genetic risk factors and are at risk of increased morbidity. 

Antonia Wiala, MD1, Kareem G Elhage, BA2, Albert T. Young, MD, MAS3, Mark Gregory, MS3, Indra Adrianto, PhD3-7, Li Zhou, MD, MS4-7, Qing-Sheng Mi, MD, PhD4-7, Sugandh Kumar, PhD2, Faye Orcales, BS2, Samuel Yeroushalmi, MD2, Kathryn Haran, BS2, Haley B. Naik 2, Wilson Liao, MD2, Christian Posch MD, PhD1,8-10*
1 Clinic Landstrasse, Department of Dermatology, 1030 Vienna, Austria
2 Department of Dermatology, University of California, San Francisco, CA, USA 
3 Center for Bioinformatics, Department of Public Health Sciences, Henry Ford Health, Detroit, MI, USA.
4 Center for Cutaneous Biology and Immunology Research, Department of Dermatology, Henry Ford Health, Detroit, MI, USA.
5 Henry Ford Health + Michigan State University Health Sciences, East Lansing, MI 48824, USA.
6 Immunology Research Program, Henry Ford Cancer Institute, Henry Ford Health, Detroit, MI, USA.
7 Department of Medicine, College of Human Medicine, Michigan State University, East Lansing, MI, USA. 
8 School of Medicine, Sigmund Freud University; 1020 Vienna, Austria
9 Clinic Hietzing, Department of Dermatology, 1130 Vienna, Austria 
10 Department of Dermatology and Allergy, School of Medicine, German Cancer Consortium (DKTK), Technical University of Munich, Munich, Germany

Supplemental information
Supplemental Material and Methods

Supplemental Figures
Supplemental Fig. 1 HLA-C*06:02 frequency for healthy, HS-only, PSO-only and PsoSH patients

Supplemental Tables
Supplemental Table 1. Excel Data Sheet, see supplemental Materials and Methods
Supplemental Table 2. Excel Data Sheet, see supplemental Materials and Methods
Supplemental Table 3. Demographics of the All of Us Cohort comparing patients with Hidradenitis suppurativa (HS) only, Psoriasis only and a diagnosis of both HS and psoriasis.
Supplemental Table 4. Multivariate regression analysis of PSO-HS status (versus HS or Pso alone) with comorbidity and quality of life outcomes
Supplemental Table 5. Analyzing patients with high PSO-PRS to patients (upper 50%) compared to those with low PSO-PRS (lower 50%) revealed significant differences regarding disease onset of psoriasis, TNF-alpha response rates and BMI.
DOI: 10.17632/x9tm7xtz7c
title: Supplementary Material for the JAAD-D-25-01133R1 Impact of personal sun sensitivity and UV radiation on the association between blistering sunburns and melanoma

description: Supplementary Methods, Supplementary Tables 1-4, and Supplementary Figure 1
DOI: 10.6084/m9.figshare.12625418.v1
title: Adaptation and coordinated evolution of plant hydraulic traits.

description: Hydraulic properties control plant responses to climate and are likely to be under strong selective pressure, but their macro-evolutionary history remains poorly characterized. To fill this gap, we compiled a global dataset of hydraulic traits describing xylem conductivity (<i>K</i><sub>s</sub>), xylem resistance to embolism (P50), sapwood allocation relative to leaf area (Hv) and drought exposure (ψ<sub>min</sub>), and matched it with global seed plant phylogenies. Individually, these traits present medium to high levels of phylogenetic signal, partly related to environmental selective pressures shaping lineage evolution. Most of these traits evolved independently of each other, being co-selected by the same environmental pressures. However, the evolutionary correlations between P50 and ψ<sub>min</sub> and between <i>K</i><sub>s</sub> and Hv show signs of deeper evolutionary integration because of functional, developmental or genetic constraints, conforming to evolutionary modules. We do not detect evolutionary integration between conductivity and resistance to embolism, rejecting a hardwired trade-off for this pair of traits.
DOI: 10.6084/m9.figshare.13326038.v1
title: Marker gene alignment for phylogenetic symbiont tree

description: All available MAGs (irrespective of completion) were used to generate a concatenated gene tree. The CheckM version 1.1.3 lineage workflow was used to locate, align, and concatenate the default set of 43 universal marker genes. Checkm’s automatically generated concatenated protein alignment of these 43 marker genes was then submitted to the W-IQ-TREE server using the default settings (auto substitution model detection, 1000 ultrafast bootstraps, and 1000 replicates of SH-aLRT branch tests).
DOI: 10.17632/3ysdzstccx
title: Vibrations of Thin Rectangular Plates

description: The video demonstrates the specific modes of the rectangular plate. That modes are previously theoretically calculated in a scientific article.
DOI: 10.17632/hdz6cypk9d
title: 2022 Federal Election Campaign Leaders' Transcripts and Statements

description: This dataset comprises all media releases, speeches, opinion pieces, and transcripts of interviews and doorstops released by the leaders of the two major parties, Scott Morrison and Albanese, through their websites during the 2022 Federal Election Campaign. They are organised by date. The original websites have sense been deleted. The data also includes the topic groupings that the authors used to undertake their analysis of these materials.
DOI: 10.17632/dm8whckp53
title: PROJETO CONCEITUAL DE UMA MÁQUINA DE ENSAIOS MECÂNICOS PORTÁTIL PARA FINS DIDÁTICOS

description: Anais do II Simpósio Gaúcho de Engenharia Aeroespacial e Mecânica, UFSM
Santa Maria, RS, 24 a 26 de outubro de 2023