cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10014823
title: Secondary Graft Loss After Third-party "Off-The-Shelf" Antigen-Specific T cell Infusion

description: Here, we describe a severe adverse event of virus-specific T cell (VST therapy) in an infant with severe combined immunodeficiency who received VSTs for treatment of CMV viremia post-transplant and developed secondary graft rejection at 1-month post-VST infusion associated with the expansion of VST donor-derived T cells. Deposited here are the bulk repertoire, single-cell gene expression and TCR, and flow cytometry data from the study.
bulk_rep.zip contains tables of alpha/beta TCR sequences for post-infusion, VST donor, and VST product samples, and samples stimulated with neoepitope peptides. 
VST_agg_wTCR_SS.rds is an R Data Serialization file containing a Seurat object of the processed 10X single-cell gene expression and TCR profiling for the post-infusion, VST donor, and VST product samples. TCR information is stored in the meta.data slot.
P0230D neoantigen expansions.acs, P0230D pentamers.acs, and P0230D_MLR.acs contain the flow cytometry data for the neoantigen and mixed lymphocyte reaction experiments.
DOI: 10.5281/zenodo.10014824
title: Secondary Graft Loss After Third-party "Off-The-Shelf" Antigen-Specific T cell Infusion

description: Here, we describe a severe adverse event of virus-specific T cell (VST therapy) in an infant with severe combined immunodeficiency who received VSTs for treatment of CMV viremia post-transplant and developed secondary graft rejection at 1-month post-VST infusion associated with the expansion of VST donor-derived T cells. Deposited here are the bulk repertoire and single-cell gene expression and TCR  data from the study.
bulk_rep.zip contains tables of alpha/beta TCR sequences for post-infusion, VST donor, and VST product samples, and samples stimulated with neoepitope peptides. 
VST_agg_wTCR_SS.rds is an R Data Serialization file containing a Seurat object of the processed 10X single-cell gene expression and TCR profiling for the post-infusion, VST donor, and VST product samples. TCR information is stored in the meta.data slot.
DOI: 10.5281/zenodo.10028505
title: Secondary Graft Loss After Third-party "Off-The-Shelf" Antigen-Specific T cell Infusion

description: Here, we describe a severe adverse event of virus-specific T cell (VST therapy) in an infant with severe combined immunodeficiency who received VSTs for treatment of CMV viremia post-transplant and developed secondary graft rejection at 1-month post-VST infusion associated with the expansion of VST donor-derived T cells. Deposited here are the bulk repertoire, single-cell gene expression and TCR, and flow cytometry data from the study.
bulk_rep.zip contains tables of alpha/beta TCR sequences for post-infusion, VST donor, and VST product samples, and samples stimulated with neoepitope peptides. 
VST_agg_wTCR_SS.rds is an R Data Serialization file containing a Seurat object of the processed 10X single-cell gene expression and TCR profiling for the post-infusion, VST donor, and VST product samples. TCR information is stored in the meta.data slot.
P0230D neoantigen expansions.acs, P0230D pentamers.acs, and P0230D_MLR.acs contain the flow cytometry data for the neoantigen and mixed lymphocyte reaction experiments.
DOI: 10.5281/zenodo.10028510
title: METADADOS EXTRAIDOS DA BASE WOS PARA A PESQUISA TRABALHO DOCENTE NO BRASIL (2008-2023)

description: TRATA-SE DE UM CONJUNTO COM 286 REGISTROS OBTIDOS NA BASE DE DADOS WEB OF SCIENCE EM 08 SETEMBRO DE 2023 PARA O ESTUDO BIBLIOMÉTRICO EM ANDAMENTO TRABALHO DOCENTE NO BRASIL.
DOI: 10.5281/zenodo.10028511
title: METADADOS EXTRAIDOS DA BASE WOS PARA A PESQUISA TRABALHO DOCENTE NO BRASIL (2008-2023)

description: TRATA-SE DE UM CONJUNTO COM 286 REGISTROS OBTIDOS NA BASE DE DADOS WEB OF SCIENCE EM 08 SETEMBRO DE 2023 PARA O ESTUDO BIBLIOMÉTRICO EM ANDAMENTO TRABALHO DOCENTE NO BRASIL.
DOI: 10.21223/eq3ir5/gvikjy
title: PTYL200603_CIPHQ_LMsummer_Cho.xls

description: :unav
DOI: 10.21223/eq3ir5/fjo8zt
title: 01_Fieldbook_PTYL200603_CIPHQ.txt

description: :unav
DOI: 10.21223/eq3ir5/xclnpc
title: 03_Data_Dictionary.txt

description: :unav
DOI: 10.21223/eq3ir5/vyksvl
title: 02_Material_list_PTYL200603_CIPHQ.txt

description: :unav
DOI: 10.21223/eq3ir5
title: Dataset for: Screening of Potato Clones in summer in La Molina, Lima, 2006

description: A screening of 644 clones was conducted in La Molina, Lima during the summer of 2006. The clones were subjected to long-day treatments. This trial did not use a statistical design, and only one replication was performed.
DOI: 10.26078/wd5t-tp27
title: Student Goal Setting, Goal Tracking, and Goal Accomplishment
DOI: 10.34740/kaggle/dsv/6751856
title: International reserves in Brazil
DOI: 10.22003/xfel.eu-data-004520-00
title: Phase transitions in amorphous solids under shock loading
DOI: 10.6084/m9.figshare.24415657
title: Amanda_Freitas_Data

description: Capacity of Brazilian <i>Aedes aegypti</i> populations to transmit a locally circulating lineage of Chikungunya virus
DOI: 10.6084/m9.figshare.24415696
title: Data set

description: <b>Pharmacologically diverse antidepressants were recently described to directly bind to TrkB and drive a positive allosteric modulation of endogenous BDNF action, thus promoting neuronal activity-dependent synaptic plasticity. Although neurotrophins such as BDNF can still bind to the p75 neurotrophin receptor (p75NTR), their precursors are the high affinity p75NTR ligands. While part of an unrelated receptor family, inducing even completely opposite physiological changes, both TrkB and p75NTR feature a cross-like conformation dimer and carry a cholesterol-recognition and alignment consensus in the transmembrane domain. Once such qualities were found crucial for the antidepressants to bind to TrkB and drive their behavioral and plasticity effects, we hypothesized that their effect might also depend on p75NTR. Indeed, we found that antidepressants like fluoxetine and the fast-acting ketamine also bind to p75NTR, trigger its proteolytic pathway, and induce p75NTR-dependent behavioral/neuroplasticity changes. We thus suggest that antidepressants co-opt both BDNF/TrkB and proBDNF/p75NTR systems to induce </b><b>a more </b><b>efficient activity-dependent synaptic competition, thereby boosting the brain ability for remodeling.</b>
DOI: 10.6084/m9.figshare.24415696.v1
title: Data set

description: <b>Pharmacologically diverse antidepressants were recently described to directly bind to TrkB and drive a positive allosteric modulation of endogenous BDNF action, thus promoting neuronal activity-dependent synaptic plasticity. Although neurotrophins such as BDNF can still bind to the p75 neurotrophin receptor (p75NTR), their precursors are the high affinity p75NTR ligands. While part of an unrelated receptor family, inducing even completely opposite physiological changes, both TrkB and p75NTR feature a cross-like conformation dimer and carry a cholesterol-recognition and alignment consensus in the transmembrane domain. Once such qualities were found crucial for the antidepressants to bind to TrkB and drive their behavioral and plasticity effects, we hypothesized that their effect might also depend on p75NTR. Indeed, we found that antidepressants like fluoxetine and the fast-acting ketamine also bind to p75NTR, trigger its proteolytic pathway, and induce p75NTR-dependent behavioral/neuroplasticity changes. We thus suggest that antidepressants co-opt both BDNF/TrkB and proBDNF/p75NTR systems to induce </b><b>a more </b><b>efficient activity-dependent synaptic competition, thereby boosting the brain ability for remodeling.</b>
DOI: 10.7303/syn52558808.1
title: sih_dict.csv
DOI: 10.6084/m9.figshare.23699472
title: Variant effect scores

description: Predicted variant scores from various methods and LLMs for a curated collection of SNVs. Prediction scores for all the four subsets are normalized with respect to the Population set.
DOI: 10.6084/m9.figshare.23699472.v2
title: Variant effect scores

description: Predicted variant scores from various methods and LLMs for a curated collection of SNVs. Prediction scores for all the four subsets are normalized with respect to the Population set.
DOI: 10.6084/m9.figshare.23699472.v1
title: Variant effect scores

description: Predicted variant scores from various methods and embeddings for a curated collection of SNVs.
DOI: 10.5281/zenodo.10028602
title: CRABS Crabs Shell Field Test

description: This data contains the data and spectrum files for the Crabs Shell.
DOI: 10.6084/m9.figshare.23699457
title: Performance of variant effect predictors

description: Performance of various variant effect predictor on three datasets. Check the project for more details.
DOI: 10.5281/zenodo.10028601
title: CRABS Crabs Shell Field Test

description: This data contains the data and spectrum files for the Crabs Shell.
DOI: 10.6084/m9.figshare.23699457.v2
title: Performance of variant effect predictors

description: Performance of various variant effect predictor on three datasets. Check the project for more details.
DOI: 10.6084/m9.figshare.23699457.v1
title: Performance of variant effect predictors

description: Performance of various variant effect predictor on three datasets. Check the project for more details.
DOI: 10.5281/zenodo.10028566
title: Brown 23 et al - Metagenome Assembled Genomes from Activated Sludge Bioreactors

description: in this folder are the gtdb classifications, checkm output, and a fasta file for each MAG
DOI: 10.5281/zenodo.10028565
title: Brown 23 et al - Metagenome Assembled Genomes from Activated Sludge Bioreactors

description: in this folder are the gtdb classifications, checkm output, and a fasta file for each MAG
DOI: 10.5066/p9zdpvu4
title: Fatty acid tissue concentrations of laboratory fed Lampsilis cardium mussels

description: The role of disease in freshwater mussel declines has been largely ignored due to the lack of appropriate diagnostic tools and metabolomic markers of stress. Mussels in this study were either fed a prepared diet or unfed and their condition was assessed with the observed changes in fatty acid content of their tissue. This dataset contains quantitative fatty acid data from nonlethal (biopsy) sampling of foot tissue. These data may provide biomarkers indicative of freshwater mussel?s metabolic status.
DOI: 10.5281/zenodo.5547736
title: Stability of martian multi-component brines at low temperatures

description: The main folder contains four subfolders, and two text files: “GWB parameters”, which summarizes all the parameters in the Geochemist’s Workbench (GWB) React module that have been changed from their default value (for the purpose of reproducing our data). The second file “vincent_jan19_A-phiPoly” contains the thermodynamic data used for modelling at low temperatures. This file is only compatible with the latest version of GWB (version 15).


Each of the model folders (Model 1, Model 2, and Model 3) contains three subfolders. Each of these subfolders contain the output graphs obtained from Geochemist’s Workbench at each temperature step, along with the associated data text files. The first of these folders is Minerals vs Water Activity. It contains graphs of the precipitating minerals (mol) on the y-axis versus water activity on the x-axis. The second folder is Species Concentration vs Water Activity. This folder contains graphs of species (mmol/kg) on the y-axis versus water activity on the x-axis. The last of these three folders is Water Mass vs Water Activity. It contains graphs of water activity on the y-axis versus mass of water (g) on the x-axis. In addition to these three subfolders, each model folder contains a text file “Mineral Water Activity MX” (MX being the model number) with the water activity of at each precipitating mineral at each temperature. There is also an Excel file “Minerals Temp vs Water Activity M1” that contains tables and graphs of temperature vs water activity for each precipitant.


The last folder named “Figures” contains two additional Excel files used to construct the figures presented in the paper. One is called “Multibrine 2021 All Minerals on One Graph”, and contains a combined graph, for each model, of temperature vs water activity for all precipitants (Figure 1 in the paper). The other Excel file is called “Lowest Water Activity vs Temp”, and contains tables and a graph comparing the lowest recorded water activity value at each temperature with Phoenix Lander data (Figure 2 of the paper).
DOI: 10.5281/zenodo.5547735
title: Stability of martian multi-component brines at low temperatures

description: The main folder contains four subfolders, and two text files: “GWB parameters”, which summarizes all the parameters in the Geochemist’s Workbench (GWB) React module that have been changed from their default value (for the purpose of reproducing our data). The second file “vincent_jan19_A-phiPoly” contains the thermodynamic data used for modelling at low temperatures. This file is only compatible with the latest version of GWB (version 15).


Each of the model folders (Model 1, Model 2, and Model 3) contains three subfolders. Each of these subfolders contain the output graphs obtained from Geochemist’s Workbench at each temperature step, along with the associated data text files. The first of these folders is Minerals vs Water Activity. It contains graphs of the precipitating minerals (mol) on the y-axis versus water activity on the x-axis. The second folder is Species Concentration vs Water Activity. This folder contains graphs of species (mmol/kg) on the y-axis versus water activity on the x-axis. The last of these three folders is Water Mass vs Water Activity. It contains graphs of water activity on the y-axis versus mass of water (g) on the x-axis. In addition to these three subfolders, each model folder contains a text file “Mineral Water Activity MX” (MX being the model number) with the water activity of at each precipitating mineral at each temperature. There is also an Excel file “Minerals Temp vs Water Activity M1” that contains tables and graphs of temperature vs water activity for each precipitant.


The last folder named “Figures” contains two additional Excel files used to construct the figures presented in the paper. One is called “Multibrine 2021 All Minerals on One Graph”, and contains a combined graph, for each model, of temperature vs water activity for all precipitants (Figure 1 in the paper). The other Excel file is called “Lowest Water Activity vs Temp”, and contains tables and a graph comparing the lowest recorded water activity value at each temperature with Phoenix Lander data (Figure 2 of the paper).
DOI: 10.5066/p96oohnz
title: Pesticide concentration and related water-quality data for selected groundwater sites near areas of agricultural land use in Alabama, 2009-2020

description: Data in this release were collected and computed to evaluate the occurrence of pesticides in shallow groundwater in the state of Alabama. Additionally, these data support interpretation in Gill (2023) for a cooperative project between the U.S. Geological Survey and the Alabama Department of Agriculture and Industries. During 2009-2020, samples were collected from twenty-four wells located near agricultural land use in Alabama and evaluated for concentrations of agricultural pesticides and pesticide degradates. Most data produced from the sampling effort are available from the publicly accessible USGS National Water Information System (NWIS; U.S. Geological Survey, 2023). For certain pesticide compounds, data were combined from multiple analytical methods to provide a longer period of record in order to evaluate changes in concentrations and occurrence through time.� All groundwater quality data used in Gill (2023), including supporting quality assurance datasets, are� included in this data release. �
DOI: 10.5281/zenodo.10028685
title: MSDA
DOI: 10.5281/zenodo.10028684
title: MSDA
DOI: 10.5281/zenodo.10023066
title: Proximity labeling-based profiling reveals a central role of the nuclear pore in mRNA metabolism

description: The dataset for 'Proximity labeling-based profiling reveals a central role of the nuclear pore in mRNA metabolism'
This repository contains 81 high-confidence heterodimer complexes discussed in the publication.
DOI: 10.5281/zenodo.10023065
title: Proximity labeling-based profiling reveals a central role of the nuclear pore in mRNA metabolism

description: The dataset for 'Proximity labeling-based profiling reveals a central role of the nuclear pore in mRNA metabolism'
This repository contains 81 high-confidence heterodimer complexes discussed in the publication.
DOI: 10.5281/zenodo.10028690
title: qualABEER2 FOR Investigating Trichophyton violaceum Metabolites and their Effects In Vivo
DOI: 10.5281/zenodo.10028689
title: qualABEER2 FOR Investigating Trichophyton violaceum Metabolites and their Effects In Vivo
DOI: 10.26093/cds/vizier.51650175
title: Light curve follow up of MOA-2020-BLG-208L

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'MOA-2020-BLG-208Lb; Cool Sub-Saturn-mass Planet within Predicted Desert.' (bibcode: 2023AJ....165..175O)
DOI: 10.26093/cds/vizier.22660028
title: Orbital parameters of Kepler heartbeat stars

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'Modeling and orbital parameters of Kepler heartbeat stars.' (bibcode: 2023ApJS..266...28L)
DOI: 10.26093/cds/vizier.22660009
title: Young Supernova Experiment (YSE) DR1

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Young Supernova Experiment Data Release 1 (YSE DR1): light curves and photometric classification of 1975 supernovae.' (bibcode: 2023ApJS..266....9A)
DOI: 10.5281/zenodo.10028694
title: qualABEER2+1 FOR Investigating Trichophyton violaceum Metabolites and their Effects In Vivo
DOI: 10.5281/zenodo.10028693
title: qualABEER2+1 FOR Investigating Trichophyton violaceum Metabolites and their Effects In Vivo
DOI: 10.6084/m9.figshare.24312667
title: Supplemental dataset_Ssukreet_ C-00282-2023_The Absorption of Bovine Milk Small Extracellular Vesicles Largely Depends on Galectin 3 and Galactose Ligands in Human Intestinal Cells and C57BL/6J Mice

description: Supplemental data for <b>The Absorption of Bovine Milk Small Extracellular Vesicles Largely Depends on Galectin 3 and Galactose Ligands in Human Intestinal Cells and C57BL/6J Mice</b> submitted to AJP-Cell physiology<br><br><br>
DOI: 10.6084/m9.figshare.24312667.v4
title: Supplemental dataset_Ssukreet_ C-00282-2023_The Absorption of Bovine Milk Small Extracellular Vesicles Largely Depends on Galectin 3 and Galactose Ligands in Human Intestinal Cells and C57BL/6J Mice

description: Supplemental data<br><br><br>
DOI: 10.6075/j0rj4jpw
title: Data from: Impacts of Dropsonde Observations on Forecasts of Atmospheric Rivers and Associated Precipitation in the NCEP GFS and ECMWF IFS models

description: European Centre for Medium-Range Weather Forecasts (ECMWF) and National Centers for Environmental Prediction (NCEP) integrated vapor transport (IVT) and precipitation NetCDF data from control forecasts and data denial forecasts (without dropsondes assimilated) for Atmospheric River Reconnaissance (AR recon) 2019 and 2020. Forecast lead times are from 24 to 120 hours. NCEP files were created using the Global Forecast System (GFS) v15. ECMWF files were created using the Integrated Forecast System (IFS) cycles 45r1 and 46r1. Control (CTRL or buoy_CTRL) forecasts are the operational forecasts from each center. The denial (Deny) forecasts only differ from the control in that the dropsondes from AR recon (Atmospheric River Reconnaissance) were excluded from the assimilation. Precipitation is the 24-hour accumulation. IVT is computed from pressure level data, integrated from the surface to 300 hPa (for ECMWF) and from the surface to 200 hPa (for NCEP).
description: NetCDF Classic Format
DOI: 10.5281/zenodo.10028697
title: Physiological  blood &  Biochemical parameters
DOI: 10.5066/p9ka5bix
title: Application amount and total phosphorus content for ice control products applied at Mitchell International Airport in Milwaukee, Wisconsin from 2015 - 2021

description: A record of aircraft and pavement ice control products applied at Mitchell International Airport in Milwaukee, WI during water years 2015 - 2021, with an accompanying chemical analysis of the phosphorus content and chemical oxygen demand of those products.
DOI: 10.5281/zenodo.10028698
title: Physiological  blood &  Biochemical parameters
DOI: 10.5281/zenodo.10028718
title: Data for maxisi/gw150914_rd_comment [main]

description: Data automatically uploaded by the showyourwork workflow. Each of the files in this deposit were generated from a user-defined Snakemake rule with the same name and hash specified below. Please visit github.com/showyourwork and/or the article source repository for more information.
description: finchmoore1: 15e87bc38b79f91afb439ff8ca3dc242d752ebe676fc14612fbca1e8a4f8a236
finchmoore2: 4a653d8df915374801551ac334190265f61914083adf20e41e7f144e1d9e3d2a
fig1prep: 35d962e6db2a6b5ec1be20bbec5259a6fdbb97f44156a69c3a9ae78c6987292e
DOI: 10.5281/zenodo.10028719
title: Data for maxisi/gw150914_rd_comment [main]

description: Data automatically uploaded by the showyourwork workflow. Each of the files in this deposit were generated from a user-defined Snakemake rule with the same name and hash specified below. Please visit github.com/showyourwork and/or the article source repository for more information.
description: finchmoore1: 15e87bc38b79f91afb439ff8ca3dc242d752ebe676fc14612fbca1e8a4f8a236
finchmoore2: 4a653d8df915374801551ac334190265f61914083adf20e41e7f144e1d9e3d2a
fig1prep: 35d962e6db2a6b5ec1be20bbec5259a6fdbb97f44156a69c3a9ae78c6987292e
DOI: 10.21223/sjgdzz/rh6ots
title: PTYL200605_COMAS.xls

description: :unav
DOI: 10.21223/sjgdzz/hfzysc
title: 01_Fieldbook_PTYL200605_COMAS.txt

description: :unav
DOI: 10.21223/sjgdzz/umrgf3
title: 03_Data_Dictionary.txt

description: :unav
DOI: 10.21223/sjgdzz/igxjtx
title: 02_Material_list.txt

description: :unav
DOI: 10.5281/zenodo.10028574
title: Data for "Early planting adaptation makes the coupled food-water system more sustainable under climate change"

description: Data for submission "Early planting adaptation makes the coupled food-water system more sustainable under climate change"
All data are in netcdf format and can be read in ncl, python, R code capacity.
 
geo_em.d01.conus.corn:
Domain setup file for the Noah-MP crop model in the US corn belt. Lat/lon location specified by "XLAT_M" and "XLONG_M" variable and corn planting area specified by "CROPTYPE" variable.
 
Three zip files are uploaded containing data from model simulations and county-level yield and irrigation record:
Yield_data.zip:
yield data from model simulations (denoted by three scenarios, CTRL, PGW, TAVE), with irrigation (irr), and from USDA NASS (NASS).
Irrigation_data.zip:
Irrigation amount data from three scenarios (CTRL, PGW, TAVE for early planting), and from USGS water use record (2005 and 2010).
TempPrecPET.zip:
temperature and precipitation and potential evapotranspiration data (PET) for the CTRL and PGW climate scenarios.