cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3639977_d8
title: MOESM2 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 2: Table S2. Expression levels of NMR lncRNAs among different tissues.
DOI: 10.6084/m9.figshare.c.3639977_d6
title: MOESM8 of Insights into long noncoding RNAs of naked mole rat (Heterocephalus glaber) and their potential association with cancer resistance

description: Additional file 8: Table S7. List of potential tumor-suppressor genes of NMR genome (PTSGs-NMR).
DOI: 10.6084/m9.figshare.c.3639533_d1
title: Additional file 7: of Two NAC transcription factors from Caragana intermedia altered salt tolerance of the transgenic Arabidopsis

description: Primers used in this study. (XLSX 15Â kb)
DOI: 10.15468/dl.vcyza6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tetraodon rubripes Temminck & Schlegel, 1850",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032113-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3639509_d7
title: Additional file 4: Table S3. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: Direct, indirect, total and marginal effects for Fig.Â 4. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3639509_d6
title: Additional file 5: Table S4. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: P-value for the path coefficient (SNPs to Phenotype) of the genotype-phenotype networks with 31 genes and 11 phenotypes estimated using S2SEM method. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3639509_d4
title: Additional file 3: Table S2. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: P-values for the path coefficient, mariginal effects of single trait and multiple traits, and minimum of P-values from PCA analysis for 13 genes that are connected to more than 4 phenotypes in Fig.Â 4. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3639509_d5
title: Additional file 2: Table S1. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: Path coefficients and P-values in Fig.Â 4. (XLSX 40 kb)
DOI: 10.6084/m9.figshare.c.3639509_d1
title: Additional file 6: Table S5. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: SNPs to phenotype edges in the genotype-phenotype network estimated by QTL net method. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3639509_d2
title: Additional file 7: Table S6. of A new statistical framework for genetic pleiotropic analysis of high dimensional phenotype data

description: Reported 45 genes out of 137 genes that are associated with the phenotypes in the analysis or other CVD related phenotypes. (XLSX 11 kb)
DOI: 10.15468/dfdh2j
title: EMBRAPA FLORESTAS | Soil macrofauna communities in organic grain production systems in Jataizinho, Paraná, Brazil

description: Soil macrofauna communities were evaluated in two annual grain crop (soybean and maize) organic production systems in the municipality of Jataizinho, Paraná, Brazil, in April 2003. Sampling followed the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 40 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.15468/dl.kyhrxh
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrotheca ovifera (Lichtenstein & Weinland, 1854)"
 ]
}

 The dataset's 3 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032095-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pzfvxzv9hy.1
title: Concept prototype of bone fixation method and drive mechanism in implantable walking assist cyborgs

description: Supplementary video
DOI: 10.17632/yjd3rb788v.1
title: An exogenous encoding sequence based on DNA data storage technology and its application in assisted reproductive technology

description: Safety and ethical issues are the primary concerns for assisted reproductive technology (ART). However, confusion and contamination of samples are common problems in embryo laboratories, preimplantation genetic test (PGT) laboratories, and third-party medical testing laboratories due to large sample numbers and complex procedures. Once these problems occur, they are often difficult to trace, posing risks and ethical challenges to hospital reproductive centers, third-party medical testing laboratories, and patient families. Therefore, it is necessary to establish an effective and feasible tracing system to ensure sample safety. In this study, we designed an exogenous encoding sequence (EES) based on DNA data storage technology, which provide a unique identification code for each in vitro cultured embryo, effectively avoiding potential risks and ethical problems caused by sample confusion and contamination. This exogenous encoding sequence is a DNA molecule that is non-toxic and structurally stable. We verified that a small amount of exogenous encoding sequence (6*109 copies/uL) can be amplified together with embryo biopsy cells and detected by various sequencing methods without affecting copy number variants (CNVs). Furthermore, if there is contamination from other samples at a proportion of more than 5%, it can also be identified through the encoding information of the exogenous encoding sequence. Our study proves that the exogenous encoding sequence designed based on DNA data storage technology is effective and reliable, and can be applied in hospital reproductive centers and third-party medical testing laboratories to improve the safety of in vitro cultured embryos and avoid potential ethical problems in the future.
DOI: 10.6084/m9.figshare.c.3638936_d6
title: Additional file 4: Table S4. of Widespread natural variation of DNA methylation within angiosperms

description: Classification of gene methylation status: part A species A. thaliana through L. japonicus. (XLSX 10029 kb)
DOI: 10.6084/m9.figshare.c.3638936_d5
title: Additional file 6: Table S6. of Widespread natural variation of DNA methylation within angiosperms

description: Summary statistics for evolutionary analysis of gbM genes. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3638936_d4
title: Additional file 5: Table S4. of Widespread natural variation of DNA methylation within angiosperms

description: Classification of gene methylation status: part B species M. domestica through Z. mays. (XLSX 10996 kb)
DOI: 10.6084/m9.figshare.c.3638936_d2
title: Additional file 2: Table S2. of Widespread natural variation of DNA methylation within angiosperms

description: Trait and feature information for each species. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3638936_d1
title: Additional file 7: Table S7. of Widespread natural variation of DNA methylation within angiosperms

description: GO term enrichment for each gene class and the species for which that GO term is enriched in. (XLSX 68 kb)
DOI: 10.15468/ek2wuh
title: EMBRAPA FLORESTAS | Soil macrofauna communities in urban public parks of Curitiba, Paraná state, Brazil

description: Soil macrofauna communities were evaluated in five urban parks of the city of Curitiba, Paraná state, Brazil: Barigui, Tingui, Barreirinha and Passaúna Municipal parks and the Botanic Garden. Samples were taken in November 2013 and July 2014 in two areas of each park: one with native Atlantic Forest, and the other with a grass lawn. Five samples were taken in each land use on each date, using the standard methodology of the Tropical Soil Biology and Fertility Programme (TSBF), where soil (down to 20 cm depth) and litter fauna were hand-sorted from monoliths of 25x25 cm, and the abundance of a total of 42 taxa was assessed.
DOI: 10.6084/m9.figshare.c.3638837_d2
title: MOESM2 of Proteomic profiling of retinoblastoma by high resolution mass spectrometry

description: Additional file 2. List of proteins and corresponding peptides identified in the present study.
DOI: 10.6084/m9.figshare.c.3638753_d12
title: Additional file 7: Table S3. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Summary of 77 genes containing DMRs across at least 6 pairs of HCCs and non-tumors by LHC-BS.
DOI: 10.6084/m9.figshare.c.3638753_d10
title: Additional file 8: Table S4. of Global analysis of DNA methylation in hepatocellular carcinoma by a liquid hybridization capture-based bisulfite sequencing approach

description: Summary of 93 DEGs shared by at least 6 paired HCC tissues.
DOI: 10.6084/m9.figshare.27173979
title: Simulation data: Crossed evaluation of surgical patient scheduling and admission policies with bed management

description: Directory contentComplete simulation results exported as SQL (txt) database: 'simresults161b10y.sql'SQL table definition of simulation results: 'simresultstab.sql'Row simulation output, 161 beds, OB (open block) policy, 10 years: 'kpis_161ob10y.csv'Row simulation output, 161 beds, MSS (master surgery schedule) policy, 10 years: 'kpis_161mss10y.csv'
DOI: 10.15468/dl.eyrsex
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fulvia mutica (Reeve, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 175 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032114-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3638651_d1
title: Additional file 2: Table S2. of Seminal fluid protein genes of the brown planthopper, Nilaparvata lugens

description: Detailed annotation of detected proteins. This file gives the detailed annotation of detected proteins including the high confident SFPs and unconfirmed SFPs. The annotation process was described in Methods. (XLSX 134 kb)
DOI: 10.17632/h2tm4wmhf3.1
title: Isolation, Identification and Optimization of growth medium with Acid Whey for the production of Beta-Galactosidase by Dairy Soil derived Streptomyces thermocarboxydus (strain NBRC 16323)

description: β-galactosidase (EC3.2.1.23) is the enzyme that catalyzes the hydrolysis of β-1,4-D-galactosidic linkage in lactose releasing D-glucose and D-galactose as end products. The enzyme holds utmost significance in food and dairy industries to manufacture lactose-hydrolyzed products for lactose-intolerant people . Also β-galactosidases can synthesize galacto-oligosaccharides (GOS) that form the vital prebiotics to improve gut health by enhancing probiotic intestinal bacterial population. 
Dairy whey, main byproduct of cheese industry comprising of lactose, minerals, and proteins on commercial scale is usually disposed into water streams, thus creating severe water and environment pollution.(6).β -galactosidases can be used to treat whey to convert it into useful products such as ethanol and syrup sweeteners that have further applications in confectionary, bakery and pharma industries.Microbial production of the enzymes offers merits like ease of fermentation, higher productivity and consequently cost reduction using agro residues and affluents. Although Escherichia coli is the predominant source of β -galactosidase, crude isolates of enzyme from these coliforms may not be preferred in food processes owing to possible unsafe factors associated with them. Actinomycetes group of microbes has not been explored before for β-galactosidase production and utilization. Hence the present study is aimed to isolate β-galactosidase producing Actinomycetes , optimize the growth and process variables by OVAT ( one variable at a time) method for highest enzyme production and identification of that isolateby phylogenetic tree analysis. 
Newly isolated Streptomyces thermocarboxydus (strain NBRC 16323) showed highest enzyme activity at pH 8 and temperature 41°C for an incubation time of 72 h with 1% (v/v) of 3day old inoculum. Maximum enzyme production is attained at a concentration of 1% acid whey , 1% of casein and NaNO3 and 5mM of Mg2+ ions. Cell permeabilization treatments of the new isolate with SDS-Chloroform and Lysozyme gave highest enzyme yield. When compared with the basal growth medium a 2x fold increase in the enzyme production is achieved. Thus the above study offers the isolation of a new Actinomycetes strain that holds promising prospects for utilization of whey for lactose hydrolysis and galacto -oligosaccharides synthesis.
DOI: 10.6084/m9.figshare.c.3638477_d1
title: Additional file 1: of Evaluating stereoacuity with 3D shutter glasses technology

description: Raw data (stereoacuity). (XLS 75 kb)
DOI: 10.6084/m9.figshare.c.3638225_d11
title: MOESM5 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 5. Enrichment analysis of KEGG PATHWAY and KEGG DISEASE. This additional file showed that differentially expressed genes were enriched in 7 KEGG pathways and 14 KEGG diseases.
DOI: 10.6084/m9.figshare.c.3638225_d10
title: MOESM4 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 4. GO functional enrichment analysis of differentially expressed genes between uninfected and GSIV-infected Chinese giant salamander. This additional file showed that 2493 differentially expressed genes (DEGs) were enriched in 433 GO terms. The GO terms showed significant enrichment of “immune system process” and “response to stimulus” in addition to the other cellular processes. The GO terms with a corrected P value ≤ 0.05 were defined as significantly enriched in DEGs.
DOI: 10.6084/m9.figshare.c.3638225_d8
title: MOESM3 of Transcriptomic analysis of the host response to an iridovirus infection in Chinese giant salamander, Andrias davidianus

description: Additional file 3. Differentially expressed genes specific for uninfected Chinese giant salamander (A) and GSIV-infected Chinese giant salamander (B). The table provided a comprehensive list of differentially expressed genes specific for uninfected Chinese giant salamander (GS_CS) and GSIV-infected Chinese giant salamander (GS_TS) at estimated absolute log2-fold change of â Ľ1 and FDR â ¤â  0.05. A total of 102 down-regulated genes were detected only in the GS_CS samples (A), and 67 up-regulated genes specific for the GS_TS samples (B).
DOI: 10.17632/8pddfk9y9h.1
title: Financial Data for Paper Default Forecasting

description: The files stored here are : 1) raw data in Excel (Name : Financial Data of all firms.xlsx) , 2) source code (in Python), name "ensemble_learning.ipynb and 3) Read Me file associated with the Source code---all were used to support the research paper " Forecasting China Bond Default with Severe Class-Imbalanced Data: A Simple Learning Model with Causal Inference " , submitted to Economic Modeling. 
i) The majority of the raw data were sourced from East Money, one major financial data vendor in China; Some variables were directly taken from the raw data (e.g. standard financial metrics); some were computed ones. All are organized and stored in the Excel files attached 
ii) The Python code takes the data file as inputs, with each column being the
DOI: 10.17632/dt37xwnx6x
title: ningyihong

description: K as an intermediate indicator to bridge soil properties and water quality parameters, aiming to examine the relationship between these two sets of variables
DOI: 10.17632/dt37xwnx6x.1
title: ningyihong

description: K as an intermediate indicator to bridge soil properties and water quality parameters, aiming to examine the relationship between these two sets of variables
DOI: 10.15468/dl.mqkd8k
title: Occurrence Download

description: A dataset containing 206526 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Falco naumanni J.G.Fleischer, 1818"
 ]
}

 The dataset includes 206526 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032103-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive108249.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108250.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100061.10fu
title: SH0100061.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108250.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108251.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100062.10fu
title: SH0100062.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108251.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108252.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108252.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108253.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100063.10fu
title: SH0100063.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108253.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0100064.10fu
title: SH0100064.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.13145/bacdive108254.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive108254.20251217.10
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.