cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0188386.10fu
title: SH0188386.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188387.10fu
title: SH0188387.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188388.10fu
title: SH0188388.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188389.10fu
title: SH0188389.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188390.10fu
title: SH0188390.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188391.10fu
title: SH0188391.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.26678345.v1
title: Additional file 1 of Comparing contamination rates of sterile-covered and uncovered transducers for ultrasound-guided peripheral intravenous lines

description: Additional file 1. Relative Light UnitData for Sterile-covered and Uncovered Transducers.
DOI: 10.6084/m9.figshare.26678348
title: Additional file 1 of The causal relationship between human blood metabolites and the risk of visceral obesity: a mendelian randomization analysis

description: Supplementary Material 1: The detailed characteristics of IVs
DOI: 10.6084/m9.figshare.26678348.v1
title: Additional file 1 of The causal relationship between human blood metabolites and the risk of visceral obesity: a mendelian randomization analysis

description: Supplementary Material 1: The detailed characteristics of IVs
DOI: 10.6084/m9.figshare.26678354
title: Additional file 3 of The causal relationship between human blood metabolites and the risk of visceral obesity: a mendelian randomization analysis

description: Supplementary Material 3: The results of scatterplots, leave-one-out, LDSC, and Steiger test
DOI: 10.6084/m9.figshare.26678354.v1
title: Additional file 3 of The causal relationship between human blood metabolites and the risk of visceral obesity: a mendelian randomization analysis

description: Supplementary Material 3: The results of scatterplots, leave-one-out, LDSC, and Steiger test
DOI: 10.15468/dl.gcvfd7
title: Occurrence Download

description: A dataset containing 18692 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.79508 21.17891,-89.83119 21.14003,-89.80341 21.09143,-89.77842 21.03728,-89.79925 21.01923,-89.79092 20.94285,-89.74232 20.88037,-89.7687 20.83454,-89.75759 20.73457,-89.70344 20.6568,-89.64928 20.66097,-89.5979 20.69152,-89.53681 20.72346,-89.51737 20.81094,-89.45349 20.8762,-89.41461 20.93869,-89.41461 21.04422,-89.49376 21.08588,-89.47293 21.16225,-89.58679 21.22196,-89.64789 21.19974,-89.70482 21.20669,-89.79508 21.17891))",
 "TaxonKey is Quiscalus mexicanus (Gmelin, 1788)"
 ]
}

 The dataset includes 18692 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067292-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26607568
title: Additional file 4 of Clinical utility of overviews on adverse events of pharmacological interventions

description: Additional file 4.
DOI: 10.6084/m9.figshare.26607568.v1
title: Additional file 4 of Clinical utility of overviews on adverse events of pharmacological interventions

description: Additional file 4.
DOI: 10.15468/dl.yd2a22
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.717601 -32.652204, 148.717601 -32.658941, 148.719846 -32.658941, 148.719846 -32.656695, 148.722092 -32.656695, 148.722092 -32.652204, 148.717601 -32.652204))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067295-240626123714530/datasets/export for details.
DOI: 10.15468/dl.mqtpf8
title: Occurrence Download

description: A dataset containing 18496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-89.80249 21.19668,-89.82067 21.15829,-89.8035 21.10677,-89.76915 21.06535,-89.76006 21.03202,-89.77016 20.98858,-89.77319 20.93605,-89.74693 20.89463,-89.7247 20.87645,-89.70652 20.85625,-89.76107 20.8118,-89.73885 20.76432,-89.71157 20.70977,-89.6944 20.67037,-89.64995 20.68149,-89.58934 20.69462,-89.54792 20.75119,-89.53479 20.80271,-89.50044 20.84918,-89.55903 20.91888,-89.4661 20.91686,-89.43175 20.92797,-89.40852 20.96636,-89.47923 20.98858,-89.43478 21.03,-89.41357 21.06535,-89.50852 21.06839,-89.52267 21.09263,-89.51357 21.15425,-89.52267 21.2088,-89.62267 21.21385,-89.68228 21.18658,-89.69844 21.20577,-89.80249 21.19668))",
 "TaxonKey is Zenaida asiatica (Linnaeus, 1758)"
 ]
}

 The dataset includes 18496 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067293-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xktv6c
title: Occurrence Download

description: A dataset containing 1680 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)"
 ]
}

 The dataset includes 1680 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067294-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26678402
title: Additional file 1 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 1. Ordered gene array of the 10 Buchnera genomes considered in this study along with measured genomic metrics.
DOI: 10.6084/m9.figshare.26678402.v1
title: Additional file 1 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 1. Ordered gene array of the 10 Buchnera genomes considered in this study along with measured genomic metrics.
DOI: 10.6084/m9.figshare.26678405
title: Additional file 2 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 2. Multiple linear regression modelling of Buchnera protein coding genes %GC and length compared to Escherichia coli, str K12.
DOI: 10.6084/m9.figshare.26678405.v1
title: Additional file 2 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 2. Multiple linear regression modelling of Buchnera protein coding genes %GC and length compared to Escherichia coli, str K12.
DOI: 10.6084/m9.figshare.26678408
title: Additional file 3 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 3. Genes identified as up and down regulated in Chong et al., 2019 were allocated to their respective quadrants (Supplementary Figure S1) for the Buchnera genomes considered in the current study.
DOI: 10.6084/m9.figshare.26678408.v1
title: Additional file 3 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 3. Genes identified as up and down regulated in Chong et al., 2019 were allocated to their respective quadrants (Supplementary Figure S1) for the Buchnera genomes considered in the current study.
DOI: 10.6084/m9.figshare.26678411
title: Additional file 4 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 4. Polymorphic sites identified in BDn when mapped with the NGS reads obtained from sequencing various D. noxia biotypes.
DOI: 10.6084/m9.figshare.26678411.v1
title: Additional file 4 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 4. Polymorphic sites identified in BDn when mapped with the NGS reads obtained from sequencing various D. noxia biotypes.
DOI: 10.6084/m9.figshare.26678414
title: Additional file 5 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 5. All RNA-seq reads obtained from Diuraphis noxia mapped to BDn.
DOI: 10.6084/m9.figshare.26678414.v1
title: Additional file 5 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 5. All RNA-seq reads obtained from Diuraphis noxia mapped to BDn.
DOI: 10.6084/m9.figshare.26678417
title: Additional file 6 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 6: Supplementary Table S1. Results obtained from maping Illumina reads to the reference genome BDn with NGS genomic reads obtained from sequencing D. noxia biotypes SA1, SAM and US2. Supplementary Table S2. Distance matrix of whole genome alignment of 10 Buchnera aphidicola genomes using MAFFT. Supplementary Table S3. Genes identified as split from all Buchnera considered in this study. Supplementary Table S4. PCR primers utilized for confirmatory sequencing of Buchnera genotypes and their characteristics. Supplementary Table S3. PCR primers utilized for amplification of Buchnera transcripts from an oligo dT(20) cDNA library and their characteristics.
DOI: 10.6084/m9.figshare.26678417.v1
title: Additional file 6 of Host-specific co-evolution likely driven by diet in Buchnera aphidicola

description: Additional file 6: Supplementary Table S1. Results obtained from maping Illumina reads to the reference genome BDn with NGS genomic reads obtained from sequencing D. noxia biotypes SA1, SAM and US2. Supplementary Table S2. Distance matrix of whole genome alignment of 10 Buchnera aphidicola genomes using MAFFT. Supplementary Table S3. Genes identified as split from all Buchnera considered in this study. Supplementary Table S4. PCR primers utilized for confirmatory sequencing of Buchnera genotypes and their characteristics. Supplementary Table S3. PCR primers utilized for amplification of Buchnera transcripts from an oligo dT(20) cDNA library and their characteristics.
DOI: 10.6084/m9.figshare.26678450
title: Additional file 2 of Sex-biased genetic regulation of inflammatory proteins in the Dutch population

description: Additional file 2: Table S1. Summary statistics of pQTL mapping and meta-anlysis results in the males group. Table S2. Summary statistics of pQTL mapping and meta-anlysis results in the females group. Table S3. Summary statistics of genome-wide significant meta-anlysis and colocalization results in the males group. Table S4. Summary statistics of genome-wide significant meta-anlysis and colocalization results in the females group Table S5. Summary statistics of analysis of variance (ANOVA) results using the 500FG cohort. Table S6. Summary statistics of conditional analysis results of sex-specific loci. Table S7. List of TFs enriched or linked to male-specific pQTL variants. Table S8. List of TFs enriched or linked to female-specific pQTL variants. Table S9. Details of enriched pathways of TFs linked with male-specific pQTL variants. Table S10. Details of enriched pathways of TFs linked with female-specific pQTL variants. Table S11. Enriched pathways of genes mapped to male-specific pQTL variants. Table S12. Enriched pathways of genes mapped to female-specific pQTL variants.
DOI: 10.6084/m9.figshare.26678450.v1
title: Additional file 2 of Sex-biased genetic regulation of inflammatory proteins in the Dutch population

description: Additional file 2: Table S1. Summary statistics of pQTL mapping and meta-anlysis results in the males group. Table S2. Summary statistics of pQTL mapping and meta-anlysis results in the females group. Table S3. Summary statistics of genome-wide significant meta-anlysis and colocalization results in the males group. Table S4. Summary statistics of genome-wide significant meta-anlysis and colocalization results in the females group Table S5. Summary statistics of analysis of variance (ANOVA) results using the 500FG cohort. Table S6. Summary statistics of conditional analysis results of sex-specific loci. Table S7. List of TFs enriched or linked to male-specific pQTL variants. Table S8. List of TFs enriched or linked to female-specific pQTL variants. Table S9. Details of enriched pathways of TFs linked with male-specific pQTL variants. Table S10. Details of enriched pathways of TFs linked with female-specific pQTL variants. Table S11. Enriched pathways of genes mapped to male-specific pQTL variants. Table S12. Enriched pathways of genes mapped to female-specific pQTL variants.
DOI: 10.6084/m9.figshare.26678486
title: Additional file 1 of Identification of a DNA damage repair-related LncRNA signature for predicting the prognosis and immunotherapy response of hepatocellular carcinoma

description: Additional file 1: Supplementary Table 1. 450 DDR gene list download from MSigDB. Supplementary Table 2. 76 DDR-related DEGs. Supplementary Table 3. 109 DDR-related lncRNAs with prognostic value.
DOI: 10.15468/dl.2rhpzd
title: Occurrence Download

description: A dataset containing 1297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Tremarctos ornatus (F.G.Cuvier, 1825)",
 "Year 2012-2024"
 ]
}

 The dataset includes 1297 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067297-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26678501
title: Additional file 1 of DNA hypomethylation promotes the expression of CASPASE-4 which exacerbates inflammation and amyloid-β deposition in Alzheimer’s disease

description: Additional file 1: Supplementary Figure 1. Microglial cells express high levels of Casp4 within mouse brains. A) UMAP visualization of brain cell meta-clusters identified in single-nucleus RNA-sequencing analysis of female mouse brain tissues (GSE207848). UMAP plots showing high RNA expression levels of Casp4 (B) and Cx3cr1 (C) within microglial cells from mouse brain tissues. Supplementary Figure 2. Fibrillar Aβ(1-42) does not prime the inflammasome response or promote cell death. A) IL-1β release from resting macrophages treated for 3 hours with 10µM fibrillar-Aβ (fAβ) or not treated (NT) with and without conjugation to cytosolic delivery reagent Profect or with LPS control followed by 30-minute activation with 5mM ATP (N=4 or N=3 for LPS only). Statistical analysis completed by mixed effects analysis with Tukey’s multiple comparisons test. B) Cell death measured by % LDH release (relative to high control) from LPS-primed mouse macrophages treated for 3 hours with 10µM fibrillar-Aβ with and without Profect, Statistical analysis completed by 2way ANOVA Tukey’s multiple comparisons test (N=5). Supplementary Figure 3. The NLRP3 inflammasome promotes IL-1β release in response to Profect-conjugated-Fibrillar Aβ(1-42). A) IL-1β release from LPS-primed macrophages from wild-type (WT) and nlrp3-/- mice treated for 3 hours with 10µM fibrillar-Aβ or not treated (NT) with and without conjugation to Profect (N=3). B) Representative immunoblots for NLRP3, CASP11, ASC, Pro-IL1β and loading control GAPDH from macrophages lysates treated with Profect-conjugated fibrillar-Aβ (fAβ) or Profect alone (NT) as in Figure 6A (N=2). Statistical analysis completed by 2way ANOVA Tukey’s multiple comparisons test. For simplicity, graph does not display p-values for all comparisons. *P ≤ 0.05, **P ≤ 0.01. Supplementary Figure 4. Expression of inflammasome components in the hippocampus of 5xFAD and 5xFAD/Casp4-/- mice. Immunoblots for CASP1, cleaved CASP1, ASC, Pro-IL1β and GAPDH loading control in hippocampal lysate from 7-month-old littermate Casp4-/- and 5xFAD/Casp4-/- mice and corresponding densitometry above background graphs (N=4). Statistical analysis completed by student’s t-test. Supplementary Figure 5. Full immunoblot staining for figures as indicated. Exposure times may vary from figure to best represent full antibody staining.