cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17031/6525151c21b26
title: 2018 Marine Biological Association of the UK (MBA) Newton Ferrers School Pacific Oyster Survey Newton Ferrers
title: 2018 Marine Biological Association of the UK (MBA) Newton Ferrers School Magallana gigas Survey Newton Ferrers

description: A school group completed a survey looking for invasive Pacific Oysters (Magallana gigas) along Newton Ferrers shoreline. There were two main surveys, three transects with quadrats laid along them and then a timed survey.
DOI: 10.17632/nwnfh5x5j3.1
title: SD-ASM dataset and script

description: This repository contains the codes and the script of the work: "Softmax-driven active shape model for segmenting crowded objects in digital pathology images " IEEE Access, 2024

Abstract: 
Background: Automated segmentation of histological structures in microscopy images is a crucial step in computer-aided diagnosis framework. However, this task remains a challenging problem due to issues like overlapping and touching objects, shape variation, and background complexity. 
Methods: To address this challenge, we present a novel and effective approach for instance segmentation through the synergistic combination of two deep learning networks (detection and segmentation models) with active shape models. Our method, called softmax-driven active shape model (SD-ASM), uses information from deep neural networks to initialize and evolve a dynamic deformable model. The detection module of the deep network enables the treatment of individual objects separately, while the semantic segmentation map precisely outlines the boundaries of histological structures.
Results: Our experiments demonstrate that integrating SD-ASMs into deep learning frameworks significantly enhances instance segmentation performance. We conducted extensive tests using various state-of-the-art architectures on two standard datasets for segmenting crowded objects like cell nuclei - MoNuSeg and CoNIC. To emphasize the versatility of our approach, we applied SD-ASMs in two additional clinical cases: steatosis and tubules segmentation. Once again, the integration of SD-ASM consistently outperformed reference methods, highlighting its effectiveness in accurately segmenting touching objects across multiple clinical scenarios. 
Conclusions: The proposed approach is inherently generalizable and can be easily applied to other imaging modalities and crowded object segmentation tasks, including fluorescence cellular imaging.
DOI: 10.15468/v7rsda
title: Parc éolien de Picardie Verte II-Suivi_activité_chiroptères_sol_WP_Dargies/Picardie_Verte_II-2018

description: Données du suivi d'activité chiroptérologique au sol en 2018
DOI: 10.6084/m9.figshare.19311550
title: Additional file 12 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 11: Table S10. The homologous sequences of selected indicators in the gene catalog constructed in this study and the bacteria carring these ARGs.
DOI: 10.6084/m9.figshare.19311544
title: Additional file 10 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 9: Table S8. The prevalence and average abundance of 24 bacterial species in samples.
DOI: 10.6084/m9.figshare.19311550.v1
title: Additional file 12 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 11: Table S10. The homologous sequences of selected indicators in the gene catalog constructed in this study and the bacteria carring these ARGs.
DOI: 10.6084/m9.figshare.19311544.v1
title: Additional file 10 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 9: Table S8. The prevalence and average abundance of 24 bacterial species in samples.
DOI: 10.6084/m9.figshare.19311547
title: Additional file 11 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 10: Table S9. The detailed information of the indicators selected for predicting the pollution level of resistance genes.
DOI: 10.6084/m9.figshare.19311547.v1
title: Additional file 11 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 10: Table S9. The detailed information of the indicators selected for predicting the pollution level of resistance genes.
DOI: 10.6084/m9.figshare.11447238
title: MOESM3 of Pesticide application has little influence on coding and non-coding gene expressions in rice

description: Additional file 3. DEGs identified by RNA-seq analysis under two pesticides treatments expressed in FPKM
DOI: 10.6084/m9.figshare.11447238.v1
title: MOESM3 of Pesticide application has little influence on coding and non-coding gene expressions in rice

description: Additional file 3. DEGs identified by RNA-seq analysis under two pesticides treatments expressed in FPKM
DOI: 10.6084/m9.figshare.19311556
title: Additional file 3 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 2: Table S1. The samples used in this study.
DOI: 10.6084/m9.figshare.19311556.v1
title: Additional file 3 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 2: Table S1. The samples used in this study.
DOI: 10.6084/m9.figshare.7777226
title: Estimation and Inference for Generalized Geoadditive Models

description: In many application areas, data are collected on a count or binary response with spatial covariate information. In this article, we introduce a new class of generalized geoadditive models (GGAMs) for spatial data distributed over complex domains. Through a link function, the proposed GGAM assumes that the mean of the discrete response variable depends on additive univariate functions of explanatory variables and a bivariate function to adjust for the spatial effect. We propose a two-stage approach for estimating and making inferences of the components in the GGAM. In the first stage, the univariate components and the geographical component in the model are approximated via univariate polynomial splines and bivariate penalized splines over triangulation, respectively. In the second stage, local polynomial smoothing is applied to the cleaned univariate data to average out the variation of the first-stage estimators. We investigate the consistency of the proposed estimators and the asymptotic normality of the univariate components. We also establish the simultaneous confidence band for each of the univariate components. The performance of the proposed method is evaluated by two simulation studies. We apply the proposed method to analyze the crash counts data in the Tampa-St. Petersburg urbanized area in Florida. Supplementary materials for this article are available online.
DOI: 10.15468/ne6pg7
title: Parc éolien de Picardie Verte II-Suivi_activité_chiroptères_nacelle_WP_Dargies/Picardie_Verte_II-2020

description: Données des enregistrements chiroptérologiques réalisés en hauteur en 2020
DOI: 10.6084/m9.figshare.7777226.v1
title: Estimation and Inference for Generalized Geoadditive Models

description: In many application areas, data are collected on a count or binary response with spatial covariate information. In this article, we introduce a new class of generalized geoadditive models (GGAMs) for spatial data distributed over complex domains. Through a link function, the proposed GGAM assumes that the mean of the discrete response variable depends on additive univariate functions of explanatory variables and a bivariate function to adjust for the spatial effect. We propose a two-stage approach for estimating and making inferences of the components in the GGAM. In the first stage, the univariate components and the geographical component in the model are approximated via univariate polynomial splines and bivariate penalized splines over triangulation, respectively. In the second stage, local polynomial smoothing is applied to the cleaned univariate data to average out the variation of the first-stage estimators. We investigate the consistency of the proposed estimators and the asymptotic normality of the univariate components. We also establish the simultaneous confidence band for each of the univariate components. The performance of the proposed method is evaluated by two simulation studies. We apply the proposed method to analyze the crash counts data in the Tampa-St. Petersburg urbanized area in Florida. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19311559
title: Additional file 4 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 3: Table S2. Information of 349 unique antimicrobial resistance genes (ARGs).
DOI: 10.6084/m9.figshare.7777226.v2
title: Estimation and Inference for Generalized Geoadditive Models

description: In many application areas, data are collected on a count or binary response with spatial covariate information. In this article, we introduce a new class of generalized geoadditive models (GGAMs) for spatial data distributed over complex domains. Through a link function, the proposed GGAM assumes that the mean of the discrete response variable depends on additive univariate functions of explanatory variables and a bivariate function to adjust for the spatial effect. We propose a two-stage approach for estimating and making inferences of the components in the GGAM. In the first stage, the univariate components and the geographical component in the model are approximated via univariate polynomial splines and bivariate penalized splines over triangulation, respectively. In the second stage, local polynomial smoothing is applied to the cleaned univariate data to average out the variation of the first-stage estimators. We investigate the consistency of the proposed estimators and the asymptotic normality of the univariate components. We also establish the simultaneous confidence band for each of the univariate components. The performance of the proposed method is evaluated by two simulation studies. We apply the proposed method to analyze the crash counts data in the Tampa-St. Petersburg urbanized area in Florida. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.19311559.v1
title: Additional file 4 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 3: Table S2. Information of 349 unique antimicrobial resistance genes (ARGs).
DOI: 10.6084/m9.figshare.19311562
title: Additional file 5 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 4: Table S3. The abundance and ARG number of 69 drug resistance classes.
DOI: 10.6084/m9.figshare.19311562.v1
title: Additional file 5 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 4: Table S3. The abundance and ARG number of 69 drug resistance classes.
DOI: 10.17632/xfwnw9gwpg.1
title: Thermal preference of mosquitoes (Culicidae) and biting midges (Ceratopogonidae) at different altitudes in Switzerland

description: Data belongs to the following manuscript: Thermal preference of mosquitoes (Culicidae) and biting midges (Ceratopogonidae) at different altitudes in Switzerland
DOI: 10.17632/njpwn2rdfx.1
title: Raw data of manuscript 'Integrated Microbiota-Bile Acid Analysis as Non-invasive Biomarkers for Ulcerative Colitis Staging Diagnose'

description: Background: Clinical staging diagnosis and progression tracking for ulcerative colitis (UC) is challenging as poor patient compliance of endoscopic biopsy. Here we perform a study that integrates metabolomic profiling, 16sRNA and metagenomic sequencing on serum and fecal samples from 23 active-state UC patients, 24 remission-state UC patients and 20 healthy volunteers from China, aiming to explore a non-invasive integrative biochemical index to quantitative track and monitor pathological activity of UC.
Results: Besides known associations of Fusobacterium nucleatum and Peptostreptococcus stomatis with UC, we found several bile acid-transforming species, including 7α- dehydroxygenase and 7α/β-dehydrogenase expressing microbiota, were significant correlated with UC pathological activity. We identified 7 microbial gene markers that differentiated active and remission-stage UC and healthy control microbiomes. Relevantly, reduced serum deoxycholic acid /cholic acid species ratio and increased fecal ursodeoxycholic acid/chenodeoxycholic acid ratio were associated with pathological activity of UC. Moreover, receiver operating characteristic analysis based on serum/fecal bile acids ratios was much accurate in prediction of active and remission stage outcome. 
Conclusions: This species-specific temporal change and bile acid dysregulation pattern linked to disease severity indicating that integrated microbiome-bile acid profile maybe implied for disease activity prediction, and that targeting microbiome-mediated restoring gut flora and bile acids homeostasis may be implicative of therapy efficacy. Collectively, these insights will help improve clinical diagnosis and optimize existing medical treatments.
DOI: 10.17632/n5wrkg8t7w.1
title: Dataset of Plasmodium falciparum sulfadoxine-pyrimethamine resistance markers in India

description: Dataset of Plasmodium falciparum sulfadoxine-pyrimethamine resistance markers in India
DOI: 10.6084/m9.figshare.11447253
title: MOESM5 of Pesticide application has little influence on coding and non-coding gene expressions in rice

description: Additional file 5. DEGs identified executing AS events under two pesticides treatments
DOI: 10.6084/m9.figshare.11447253.v1
title: MOESM5 of Pesticide application has little influence on coding and non-coding gene expressions in rice

description: Additional file 5. DEGs identified executing AS events under two pesticides treatments
DOI: 10.6084/m9.figshare.19311568
title: Additional file 6 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 5: Table S4. FDR and P values from pair-wise comparisons among nine pig populations.
DOI: 10.6084/m9.figshare.19311568.v1
title: Additional file 6 of Extensive metagenomic analysis of the porcine gut resistome to identify indicators reflecting antimicrobial resistance

description: Additional file 5: Table S4. FDR and P values from pair-wise comparisons among nine pig populations.
DOI: 10.25549/pcra-c14-58035
title: Redemption tidings, vol. 40, nos. 1-50, 3 Jan. - 25 Dec. 1964

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.kmh5r5
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.38900 37.46105,-5.23131 37.46105,-5.23131 37.96985,-6.38900 37.96985,-6.38900 37.46105))",
 "HasCoordinate is true",
 "TaxonKey is Lavandula latifolia Medik.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075329-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4674mk
title: Occurrence Download

description: A dataset containing 12134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Oenocarpus bataua Mart."
 ]
}

 The dataset includes 12134 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0397256-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-58127
title: Redemption tidings, vol. 40, nos. 1-50, 3 Jan. - 25 Dec. 1964

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.hv6qba
title: Occurrence Download

description: A dataset containing 689 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microchloa caffra Nees"
 ]
}

 The dataset includes 689 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039614-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ube7u
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clyomys laticeps (Thomas, 1909)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043367-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-58119
title: Redemption tidings, vol. 40, nos. 1-50, 3 Jan. - 25 Dec. 1964

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.zqtx6y
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Annona muricata L."
 ]
}

 The dataset includes 101 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0397254-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qs3gnb
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microchirita oculata (Craib) A.Weber & D.J.Middleton"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039603-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-60079
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.7rz2g5
title: Occurrence Download

description: A dataset containing 458659 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Poa annua L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 458659 records from 993 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071140-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gu83c8
title: Occurrence Download

description: A dataset containing 12690 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tischeriidae"
 ]
}

 The dataset includes 12690 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0397234-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-60111
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.fbjybj
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microchirita viola (Ridl.) A.Weber & Rafidah"
 ]
}

 The dataset includes 21 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039610-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.md6f4u
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllostegia rockii Sherff"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051550-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-59855
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.8v7t2e
title: Occurrence Download

description: A dataset containing 1643 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficedula elisae (Weigold, 1922)"
 ]
}

 The dataset includes 1643 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000025-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dae3jc
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hebius annamensis (Bourret, 1934), Helius panamensis Alexander, 1934)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052232-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-60057
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.2y39kw
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paraleptuca crassipes (White, 1847)"
 ]
}

 The dataset includes 433 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077887-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgxj64
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Symplocos tanakana Nakai"
 ]
}

 The dataset includes 161 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205305-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.