cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dhct2z
title: Occurrence Download

description: A dataset containing 7121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chorispora tenella (Pall.) DC., Cheiranthus taraxacifolius Schrank, Raphanus tataricus Falk, Raphanus tenellus Pall., Raphanus arcuatus Willd., Chorispora tenella var. taraxacifolia DC., Sinapis rubella Pall., Chorispermum arcuatum Andrz. ex DC., Chorispermum arcuatum Andrz., Hesperis tenella DC., Cheiranthus chius Pall., Chorispora tenella var. glabriuscula Regel & Herder, Hesperis arcuata Nocca, Raphanus monnetii H.Lév., Chorispermum tenellum (Pall.) R.Br., Crucifera tenella (Pall.) E.H.L.Krause, Chorispermum tenellum (Pall.) W.T.Aiton, Chorispora tenella var. arcuata (Willd.) DC.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 7121 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022517-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef5c6g
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis anoriensis Velasco, Gutiérrez-Cárdenas & Quintero-Angel, 2010"
 ]
}

 The dataset includes 45 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022518-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q7j7fs
title: Occurrence Download

description: A dataset containing 437084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Argasidae, Ixodidae)"
 ]
}

 The dataset includes 437084 records from 501 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015963-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26618995.v1
title: Additional file 3 of Imprinting at the KBTBD6 locus involves species-specific maternal methylation and monoallelic expression in livestock animals

description: Additional file 3: Supplementary Table 3. Summary of WGBS and RNA-seq data from PA and CN embryos.
DOI: 10.6084/m9.figshare.26713918
title: Additional file 2 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 2: Supplementary Table S1. p53 Mutations. Full list of patient samples from the GDC-TCGA pancancer dataset containing a TP53 mutation. Sample ID, mutation site, mutation base change, amino acid change, mutation effect, DNA variant allele fraction and corresponding TP53 status based on the criteria described.
DOI: 10.6084/m9.figshare.26713918.v1
title: Additional file 2 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 2: Supplementary Table S1. p53 Mutations. Full list of patient samples from the GDC-TCGA pancancer dataset containing a TP53 mutation. Sample ID, mutation site, mutation base change, amino acid change, mutation effect, DNA variant allele fraction and corresponding TP53 status based on the criteria described.
DOI: 10.6084/m9.figshare.26713921
title: Additional file 3 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 3: Supplementary Table S2. TargetGeneReg Human datasets with information regarding p53-dependent RNF144B expression. Contains information on cell ID, stress stimuli used, RNF144B expression and cell type.
DOI: 10.6084/m9.figshare.26713921.v1
title: Additional file 3 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 3: Supplementary Table S2. TargetGeneReg Human datasets with information regarding p53-dependent RNF144B expression. Contains information on cell ID, stress stimuli used, RNF144B expression and cell type.
DOI: 10.6084/m9.figshare.26619004.v1
title: Additional file 6 of Imprinting at the KBTBD6 locus involves species-specific maternal methylation and monoallelic expression in livestock animals

description: Additional file 6: Supplementary Table 5. Analyses of unique (non-matched) motifs within the putative KBTBD6 promoters in livestock and dogs.
DOI: 10.6084/m9.figshare.26713924
title: Additional file 4 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 4: Supplementary Table S3. TargetGeneReg Mouse datasets with information regarding p53-dependent RNF144B expression. Contains information on cell ID, stress stimuli used, RNF144B expression and cell type.
DOI: 10.6084/m9.figshare.26713924.v1
title: Additional file 4 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 4: Supplementary Table S3. TargetGeneReg Mouse datasets with information regarding p53-dependent RNF144B expression. Contains information on cell ID, stress stimuli used, RNF144B expression and cell type.
DOI: 10.6084/m9.figshare.26713927
title: Additional file 5 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 5: Supplementary Tables S4.1 and S4.2. Percentage of cells with mCherry or GFP fluorescence in the preinjection cellular sample or the subcutaneous tumour samples. Subcutaneous tumour samples from CTRL/RNF144B deficient (Table S4.1) or CTRL/p53 deficient (Table S4.2) MEFs were quantified by flow cytometry depending on their fluorescence signal. Represented are the percentage of mCherry+ cells (CTRL), GFP+ cells (shRNF144B or shTRP53, respectively) and the total number of fluorescent cells (mCherry and GFP cells). Negative cells were discarded as they account for mouse host cells. The percentage of GFP+ cells was calculated over the total population of detected fluorescent cells (mCherry + GFP). The preinjection sample (cellular solution before inoculation into the mice) was also quantified.
DOI: 10.6084/m9.figshare.26713927.v1
title: Additional file 5 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 5: Supplementary Tables S4.1 and S4.2. Percentage of cells with mCherry or GFP fluorescence in the preinjection cellular sample or the subcutaneous tumour samples. Subcutaneous tumour samples from CTRL/RNF144B deficient (Table S4.1) or CTRL/p53 deficient (Table S4.2) MEFs were quantified by flow cytometry depending on their fluorescence signal. Represented are the percentage of mCherry+ cells (CTRL), GFP+ cells (shRNF144B or shTRP53, respectively) and the total number of fluorescent cells (mCherry and GFP cells). Negative cells were discarded as they account for mouse host cells. The percentage of GFP+ cells was calculated over the total population of detected fluorescent cells (mCherry + GFP). The preinjection sample (cellular solution before inoculation into the mice) was also quantified.
DOI: 10.6084/m9.figshare.26713930.v1
title: Additional file 6 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 6: Supplementary Table S5. List of significant differentially expressed proteins from shRNF144BMEF versus shCTRLMEF and the corresponding changes in mRNA expression. Proteomic values represented: mean Log2 protein abundance in shCTRLMEF and shRNF144BMEF, Log2Fold Change in protein abundance of shRNF144BMEF versus shCTRLMEF, p-value and unique peptides. Transcriptomics values represented: RNA TMM (Trimmed Mean of M-values) of shCTRLMEF and shRNF144BMEF, Log2TMM of shRNF144BMEF versus shCTRLMEF and adjusted p-value.
DOI: 10.6084/m9.figshare.26713930
title: Additional file 6 of The TP53-activated E3 ligase RNF144B is a tumour suppressor that prevents genomic instability

description: Additional file 6: Supplementary Table S5. List of significant differentially expressed proteins from shRNF144BMEF versus shCTRLMEF and the corresponding changes in mRNA expression. Proteomic values represented: mean Log2 protein abundance in shCTRLMEF and shRNF144BMEF, Log2Fold Change in protein abundance of shRNF144BMEF versus shCTRLMEF, p-value and unique peptides. Transcriptomics values represented: RNA TMM (Trimmed Mean of M-values) of shCTRLMEF and shRNF144BMEF, Log2TMM of shRNF144BMEF versus shCTRLMEF and adjusted p-value.
DOI: 10.6084/m9.figshare.26619007
title: Additional file 7 of Imprinting at the KBTBD6 locus involves species-specific maternal methylation and monoallelic expression in livestock animals

description: Additional file 7: Supplementary Table 6. Read counts of informative SNPs within the KBTBD6 transcripts.
DOI: 10.6084/m9.figshare.26711263
title: SS2_CA raw data

description: raw data for CA anta SS2 infection
DOI: 10.6084/m9.figshare.26711263.v1
title: SS2_CA raw data

description: raw data for CA anta SS2 infection
DOI: 10.6084/m9.figshare.26713951
title: Additional file 2 of Comparative transcriptomic profiling of the two-stage response of rice to Xanthomonas oryzae pv. oryzicola interaction with two different pathogenic strains

description: Supplementary Material 2. Additional file 2. Supplementary tables. Table S1: The listed of primers used in this study; Table S2: RNA sequencing data quality and mapping information; Table S3: Functional annotation of common DEGs at 12 hpi; Table S4: GO analysis of up-regulated common DEGs at 12 hpi; Table S5: GO analysis of down-regulated common DEGs at 12 hpi; Table S6: GO analysis of the up-regulated common DEGs at 3 dpi; Table S7: GO analysis of the down-regulated common DEGs at 3 dpi; Table S8: Plant hormone signaling pathway related genes. Table S9: The common DEGs at 3 dpi with HGA4 and RS105.
DOI: 10.6084/m9.figshare.26713951.v1
title: Additional file 2 of Comparative transcriptomic profiling of the two-stage response of rice to Xanthomonas oryzae pv. oryzicola interaction with two different pathogenic strains

description: Supplementary Material 2. Additional file 2. Supplementary tables. Table S1: The listed of primers used in this study; Table S2: RNA sequencing data quality and mapping information; Table S3: Functional annotation of common DEGs at 12 hpi; Table S4: GO analysis of up-regulated common DEGs at 12 hpi; Table S5: GO analysis of down-regulated common DEGs at 12 hpi; Table S6: GO analysis of the up-regulated common DEGs at 3 dpi; Table S7: GO analysis of the down-regulated common DEGs at 3 dpi; Table S8: Plant hormone signaling pathway related genes. Table S9: The common DEGs at 3 dpi with HGA4 and RS105.
DOI: 10.15468/dl.p5rftd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.783348 -32.995811, 147.783348 -33.002548, 147.785594 -33.002548, 147.785594 -33.004794, 147.790086 -33.004794, 147.790086 -32.998057, 147.792331 -32.998057, 147.792331 -32.995811, 147.783348 -32.995811)), ((147.790086 -33.004794, 147.790086 -33.011531, 147.792331 -33.011531, 147.792331 -33.013777, 147.794577 -33.013777, 147.794577 -33.018269, 147.799069 -33.018269, 147.799069 -33.004794, 147.790086 -33.004794)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068048-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26713963
title: Additional file 1 of Genome-wide investigation of the LARP gene family: focus on functional identification and transcriptome profiling of ZmLARP6c1 in maize pollen

description: Additional file 1: Supplementary Table S1. Primers used in this study. Supplementary Table S2. Amino acid sequences of LARP proteins from eight plant species. Supplementary Table S3. Information on LARP proteins from eight plant species. Supplementary Table S4. Cis-acting elements in the promoter of LARP proteins in maize. Supplementary Table S5. Differentially expressed genes (FDR &lt; 0.01) in Gene Ontology (GO) subcategories (q value &lt; 0.05). Supplementary Table S6. Differentially expressed genes (FDR &lt; 0.01) in the subset of genes involved in RNA binding and reproduction. Supplementary Table S7. Log-fold change and significance of differentially expressed genes in the subset of genes involved in pollen development. Supplementary Table S8. Log-fold change and significance of jasmonic acid, abscisic acid, and mRNA surveillance-related homologous genes detected in the pollen of the Zmlarp6c1::Ds and ZmLARP6c1-OE genotypes. Supplementary Table S9. FPKM of ZmLARP6s in RNA-seq.
DOI: 10.6084/m9.figshare.26713963.v1
title: Additional file 1 of Genome-wide investigation of the LARP gene family: focus on functional identification and transcriptome profiling of ZmLARP6c1 in maize pollen

description: Additional file 1: Supplementary Table S1. Primers used in this study. Supplementary Table S2. Amino acid sequences of LARP proteins from eight plant species. Supplementary Table S3. Information on LARP proteins from eight plant species. Supplementary Table S4. Cis-acting elements in the promoter of LARP proteins in maize. Supplementary Table S5. Differentially expressed genes (FDR &lt; 0.01) in Gene Ontology (GO) subcategories (q value &lt; 0.05). Supplementary Table S6. Differentially expressed genes (FDR &lt; 0.01) in the subset of genes involved in RNA binding and reproduction. Supplementary Table S7. Log-fold change and significance of differentially expressed genes in the subset of genes involved in pollen development. Supplementary Table S8. Log-fold change and significance of jasmonic acid, abscisic acid, and mRNA surveillance-related homologous genes detected in the pollen of the Zmlarp6c1::Ds and ZmLARP6c1-OE genotypes. Supplementary Table S9. FPKM of ZmLARP6s in RNA-seq.
DOI: 10.6084/m9.figshare.26713975
title: Additional file 2 of Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters

description: Additional file 2. It contains Supplementary Tables S3, S5 and S6
DOI: 10.6084/m9.figshare.26713975.v1
title: Additional file 2 of Microbial communities colonising plastics during transition from the wastewater treatment plant to marine waters

description: Additional file 2. It contains Supplementary Tables S3, S5 and S6
DOI: 10.15468/dl.jajqpw
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.07997 39.40412,2.39343 39.40412,2.39343 41.99348,-4.07997 41.99348,-4.07997 39.40412))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Limonium aragonense (Debeaux) Font Quer"
 ]
}

 The dataset includes 57 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068049-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26713993
title: Additional file 1 of Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of lignan biosynthesis in Herpetospermum pedunculosum (Cucurbitaceae)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26713993.v1
title: Additional file 1 of Integrative analysis of the metabolome and transcriptome provides insights into the mechanisms of lignan biosynthesis in Herpetospermum pedunculosum (Cucurbitaceae)

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26618926.v1
title: Additional file 2 of Identification of key lipid metabolism-related genes in Alzheimer’s disease

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26618926
title: Additional file 2 of Identification of key lipid metabolism-related genes in Alzheimer’s disease

description: Supplementary Material 2
DOI: 10.15468/dl.9bhx5h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.868689 -33.002548, 147.868689 -33.009286, 147.870934 -33.009286, 147.870934 -33.002548, 147.868689 -33.002548)), ((147.870934 -33.009286, 147.870934 -33.011531, 147.875426 -33.011531, 147.875426 -33.009286, 147.870934 -33.009286)), ((147.875426 -33.011531, 147.875426 -33.013777, 147.877672 -33.013777, 147.877672 -33.011531, 147.875426 -33.011531)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068050-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26714077.v1
title: Additional file 3 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 3. Sample data, untransformed final ASV matrix, taxonomy and reference pufM sequences (refseq).
DOI: 10.6084/m9.figshare.26714077
title: Additional file 3 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 3. Sample data, untransformed final ASV matrix, taxonomy and reference pufM sequences (refseq).
DOI: 10.6084/m9.figshare.26714080
title: Additional file 4 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 4. Correlation between metabarcoding and FISH-IR data; Spearman correlation coefficients between pseudoabundances from pufM sequencing (i.e. relative abundance of Gammaproteobacteria class × AAP absolute number/100) and FISH-IR counts.
DOI: 10.6084/m9.figshare.26714080.v1
title: Additional file 4 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 4. Correlation between metabarcoding and FISH-IR data; Spearman correlation coefficients between pseudoabundances from pufM sequencing (i.e. relative abundance of Gammaproteobacteria class × AAP absolute number/100) and FISH-IR counts.
DOI: 10.6084/m9.figshare.26714083
title: Additional file 5 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 5. In silico coverage and specificity of ALF968 and ROS537 probes.
DOI: 10.6084/m9.figshare.26714083.v1
title: Additional file 5 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 5. In silico coverage and specificity of ALF968 and ROS537 probes.
DOI: 10.6084/m9.figshare.26714092
title: Additional file 8 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 8. Neural gas analysis at the order level: sample data with resulting BMUs for each sample, ASV matrices and taxonomy table.
DOI: 10.6084/m9.figshare.26714092.v1
title: Additional file 8 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 8. Neural gas analysis at the order level: sample data with resulting BMUs for each sample, ASV matrices and taxonomy table.
DOI: 10.6084/m9.figshare.26714095
title: Additional file 9 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 9. Neural gas analysis at the genus level: sample data with resulting BMUs for each sample, ASV matrices and taxonomy table.
DOI: 10.6084/m9.figshare.26714095.v1
title: Additional file 9 of Ecology of aerobic anoxygenic phototrophs on a fine-scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network

description: Additional file 9. Neural gas analysis at the genus level: sample data with resulting BMUs for each sample, ASV matrices and taxonomy table.
DOI: 10.6084/m9.figshare.26618974
title: Additional file 3 of Investigating the interactions of endornaviruses with each other and with other viruses in common bean, Phaseolus vulgaris

description: Additional file 3. Spreadsheet S2 Seed weight.
DOI: 10.15468/dl.c2tszs
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Georgia (GA), Georgia (State), Georgia (?), GEorgia, Georgia)",
 "TaxonKey is Nyssa ogeche W.Bartram ex Marshall"
 ]
}

 The dataset includes 97 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017820-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzt49f
title: Occurrence Download

description: A dataset containing 2188 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "TaxonKey is Graptemys geographica (Lesueur, 1817)",
 "Year 2001-2024"
 ]
}

 The dataset includes 2188 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017821-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwmxu8
title: Occurrence Download

description: A dataset containing 1682 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 {
 "or" : [
 "StateProvince is putumayo",
 "StateProvince ~putumayo",
 "StateProvince is putumayo department",
 "StateProvince is putumayo dept.",
 "StateProvince is putumayo, comisaria del",
 "StateProvince is putumayo prov.",
 "StateProvince is putumayo-sibundoy."
 ]
 },
 "PublishingOrg is one of (dc282b9d-8f3b-4197-b174-ba5272721a6f)"
 ]
 }
 ]
}

 The dataset includes 1682 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017822-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkgv36
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "GadmGid is HRV",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Barbitistes ocskayi Charpentier, 1850"
 ]
}

 The dataset includes 87 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017823-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14027082
title: Processed data for Evidence of horizontal gene transfer and environmental selection impacting antibiotic resistance evolution in soil-dwelling Listeria

description: Processed/source data for the manuscript Evidence of horizontal gene transfer and environmental selection impacting antibiotic resistance evolution in soil-dwelling Listeria.