cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.jq344
title: Data from: Spatial variability in size at maturity of golden king crab (Lithodes aequispinus) and implications for fisheries management

description: Many crab fisheries around the world are managed by size, sex and season,
 where males are given at least one opportunity to reproduce before being
 harvested. Golden king crab (Lithodes aequispinus) supports a commercial
 fishery in Southeast Alaska and legal size is based on growth and maturity
 information from other parts of their range. Size at maturity estimates
 varied for crabs among seven management areas in Southeast Alaska, where
 male maturity estimates increased in size with increases in latitude while
 maturity estimates across their North Pacific range decreased in size with
 increases in latitude. Depth, temperature, and harvest history were not
 related to variation observed in male maturity estimates. Management
 implications from this research include reducing legal size in some areas
 to maximize harvest potential and increasing in others to allow male crab
 the opportunity to reproduce before being harvested. A more conservative
 strategy would incorporate the largest maturity estimate thus, increasing
 the legal size which would have a negative impact to the commercial
 fishery, but allow male crab the opportunity to reproduce before being
 harvested. This study shows the importance of understanding how life
 history characteristics change over space and the challenge incorporating
 spatial variability for improved fisheries management.
description: SEAK_Male_SAM_DataMale size at maturity data collected for golden king crab (GKC) in Southeast, Alaska, which includes management area, carapace length (CL), and carapace width (CW).SEAK_Female_SAM_DataSize at maturity data for golden king crab collected in Southeast, Alaska, by management area, carapace length (CL), and female maturity.SEAK GKC tempTemperature data associated with golden king crab in Southeast Alaska, collected by management area, date, time, temperature reading.SEAK GKC DepthObserved depth of golden king crab captures in Southeast, Alaska.Male GKC legal spine lengthsMale golden king crab spine length data collected in Southeast, Alaska by management area. Measurements include: carapace length (CL), carapace width with and without spines.1972-2014 Port Sampling data in CWSoutheast Alaska golden king crab port sampling data used to determine the impacts of different legal size scenarios for each management area.Example male GKC SMM analysis R scriptThis is example code to conduct size at morphometric maturity analysis (SMM) and plot results using the SiZer extension package.Example male GKC SMM analysis.R
DOI: 10.17632/94rtgwzbj3.1
title: Machine Learning-Based Prediction of Floor Plan Symbols for Façade Design Alternative Generation

description: This dataset contains 5000 typical residential floor plans in image format along with their corresponding annotation files. The plans were generated by considering a fixed architectural program while exploring different spatial arrangements using Grasshopper and Magnetizing plugins . Using this dataset, a YOLO-based model was trained for floor plan image analysis and 3D model generation to produce diverse façade alternatives. The results demonstrate remarkable performance, with mAP, precision, and recall of 0.993, 0.997, and 0.99, respectively, leading to high 3D model accuracy (98.99% topology consistency) and window layout alternative generation accuracy of 99.3%.
DOI: 10.5061/dryad.64149
title: Data from: Quantifying the climatic niche of symbiont partners in a lichen symbiosis indicates mutualist-mediated niche expansions

description: The large distributional areas and ecological niches of many lichenized
 fungi may in part be due to the plasticity in interactions between the
 fungus (mycobiont) and its algal or cyanobacterial partners (photobionts).
 On the one hand, broad-scale phylogenetic analyses show that partner
 compatibility in lichens is rather constrained and shaped by reciprocal
 selection pressures and codiversification independent of ecological
 drivers. On the other hand, sub-species-level associations among lichen
 symbionts appear to be environmentally structured rather than
 phylogenetically constrained. In particular, switching between photobiont
 ecotypes with distinct environmental preferences has been hypothesized as
 an adaptive strategy for lichen-forming fungi to broaden their ecological
 niche. The extent and direction of photobiont-mediated range expansions in
 lichens, however, have not been examined comprehensively at a broad
 geographic scale. Here we investigate the population genetic structure of
 Lasallia pustulata symbionts at sub-species-level resolution across the
 mycobiont's Europe-wide range, using fungal MCM7 and algal ITS rDNA
 sequence markers. We show that variance in occurrence probabilities in the
 geographic distribution of genetic diversity in mycobiont-photobiont
 interactions is closely related to changes in climatic niches.
 Quantification of niche extent and overlap based on species distribution
 modeling and construction of Hutchinsonian climatic hypervolumes revealed
 that combinations of fungal-algal interactions change at the sub-species
 level along latitudinal temperature gradients and in Mediterranean climate
 zones. Our study provides evidence for symbiont-mediated niche expansion
 in lichens. We discuss our results in the light of symbiont polymorphism
 and partner switching as potential mechanisms of environmental adaptation
 and niche evolution in mutualisms.
description: Trebouxia.sp_raw.seqs.ITSRaw sequence data, ITS, Trebouxia sp. photobionts, headers correspond to columns: DNA.ID and Pop.ID in raw data tableLasallia.pustulata_raw.seqs.MCM7Raw sequence data, MCM7, Lasallia pustulata mycobionts, headers correspond to columns: DNA.ID and Pop.ID in raw data tableRaw.Data.1940.thalli.119.locationsRaw data for 1940 lichen thalli from 119 sampling locations across Europe
DOI: 10.5061/dryad.mp480
title: Plastic waste associated with disease on coral reefs

description: Plastic waste can promote microbial colonization by pathogens implicated
 in outbreaks of disease in the ocean. We assessed the influence of plastic
 waste on disease risk in 124,000 reef-building corals from 159 reefs in
 the Asia-Pacific region. The likelihood of disease increases from 4% to
 89% when corals are in contact with plastic. Structurally complex corals
 are eight times more likely to be affected by plastic, suggesting that
 microhabitats for reef-associated organisms and valuable fisheries will be
 disproportionately affected. Plastic levels on coral reefs correspond to
 estimates of terrestrial mismanaged plastic waste entering the ocean. We
 estimate that 11.1 billion plastic items are entangled on coral reefs
 across the Asia-Pacific and project this number to increase 40% by 2025.
 Plastic waste management is critical for reducing diseases that threaten
 ecosystem health and human livelihoods.
description: Coral plastic and
 disease dataset FINALDATASET.csv
 
 Transect length
 used to determine reef area TRANSECT_LENGTH_FINAL.csv R Script Plastic waste associated with disease on coral reefs.R
DOI: 10.17632/33j53bzydg
title: Exceptions Outnumber Rules: Successional Nitrogen Gradients Dictate Ectomycorrhizal Suppression of Wood Decomposition in Temperate Forests

description: Ectomycorrhizal (ECM) fungi are hypothesized to suppress organic matter decomposition by competing with saprotrophs for nitrogen (N) in N-limited ecosystems — the Gadgil effect. However, growing evidence indicates this interaction is highly context-dependent. Here, we tested whether ECM suppression is strongest in early-successional, N-limited forests and attenuates along a soil N gradient during succession. We conducted a root-trenching experiment (excluding ECM hyphae while permitting saprotrophic access) across a chronosequence of temperate broad-leaved Korean pine mixed forests (80, 120, 250, ≥300 years) in Changbai Mountain, northeastern China. Standardized birch wood sticks were incubated for 730 days, with assessments of mass loss, carbon (C) loss, N and phosphorus (P) enrichment in wood, and fungal community composition. Contrary to a universal Gadgil effect, trenching accelerated mass loss by up to 41% within 365 days only in the youngest, N-poorest stand (80Y), coinciding with a dramatic 781% increase in the saprotrophic ascomycete Cudoniella and &gt; 96% reduction in ECM fungi. This rapid response was accompanied by markedly enhanced wood N enrichment in trenched treatments during early decomposition in N-limited conditions. In older, N-richer stands, trenching effects on decomposition were delayed (significant only at 730 days) or strongly attenuated, with fungal communities shifting toward saprotrophic ascomycete dominance (e.g., Zopfiella in 250Y) and more modest changes in wood N and P enrichment patterns. Overall, trenching increased saprotrophic ascomycetes by 54% and total saprotrophs by 35%. These findings demonstrate that ECM suppression of decomposition is most pronounced under acute N limitation in early succession and progressively diminishes as soil N accumulates, reconciling literature inconsistencies and emphasizing the need for dynamic, nutrient-sensitive models of fungal controls on temperate forest carbon cycling.
DOI: 10.17632/33j53bzydg.1
title: Exceptions Outnumber Rules: Successional Nitrogen Gradients Dictate Ectomycorrhizal Suppression of Wood Decomposition in Temperate Forests

description: Ectomycorrhizal (ECM) fungi are hypothesized to suppress organic matter decomposition by competing with saprotrophs for nitrogen (N) in N-limited ecosystems — the Gadgil effect. However, growing evidence indicates this interaction is highly context-dependent. Here, we tested whether ECM suppression is strongest in early-successional, N-limited forests and attenuates along a soil N gradient during succession. We conducted a root-trenching experiment (excluding ECM hyphae while permitting saprotrophic access) across a chronosequence of temperate broad-leaved Korean pine mixed forests (80, 120, 250, ≥300 years) in Changbai Mountain, northeastern China. Standardized birch wood sticks were incubated for 730 days, with assessments of mass loss, carbon (C) loss, N and phosphorus (P) enrichment in wood, and fungal community composition. Contrary to a universal Gadgil effect, trenching accelerated mass loss by up to 41% within 365 days only in the youngest, N-poorest stand (80Y), coinciding with a dramatic 781% increase in the saprotrophic ascomycete Cudoniella and &gt; 96% reduction in ECM fungi. This rapid response was accompanied by markedly enhanced wood N enrichment in trenched treatments during early decomposition in N-limited conditions. In older, N-richer stands, trenching effects on decomposition were delayed (significant only at 730 days) or strongly attenuated, with fungal communities shifting toward saprotrophic ascomycete dominance (e.g., Zopfiella in 250Y) and more modest changes in wood N and P enrichment patterns. Overall, trenching increased saprotrophic ascomycetes by 54% and total saprotrophs by 35%. These findings demonstrate that ECM suppression of decomposition is most pronounced under acute N limitation in early succession and progressively diminishes as soil N accumulates, reconciling literature inconsistencies and emphasizing the need for dynamic, nutrient-sensitive models of fungal controls on temperate forest carbon cycling.
DOI: 10.5061/dryad.2501p
title: Data from: Aristolochia sinoburmanica (Aristolochiaceae), a new species from north Myanmar

description: Aristolochia sinoburmanica Y. H. Tan & B. Yang, a new species of
 Aristolochiaceae from Putao, Kachin State, Myanmar, is described and
 illustrated. According to morphology (strongly curved perianth, 3-lobed
 limb, as well as 3-lobed gynostemium, anthers 6, adnate in 3 pairs to the
 base of gynostemium, opposite to the lobes), the species belongs to
 Aristolochia subgenus Siphisia. It is morphologically similar to A.
 faviogonzalezii, A. hainanensis, A. tonkinensis, A. saccata, and A.
 xuanlienensis. The major differences between them are outlined and
 discussed. A detailed description, along with line drawings, photographs,
 habitat, distribution, conservation status as well as a comparison to
 morphologically similar species are also provided.
description: _MG_3569 material
 photostrongly curved
 perianth, 3-lobed limb, as well as 3-lobed gynostemium, anthers 6, adnate
 in 3 pairs to the base of gynostemium, opposite to the
 lobes_MG_3569.JPG
DOI: 10.5061/dryad.m944v
title: Data from: Positioning behavior according to individual color variation improves camouflage in novel habitats

description: Behavior can play a key role in adaptation, especially in novel
 environments. Here we study how ground-perching grasshoppers that
 colonized street pavements as novel habitats behaviorally manage their
 detection rates by predators. We found that grasshoppers positioned
 themselves aligned with the spaces between adjacent bricks more than
 expected by chance. By performing a virtual predation experiment, we
 confirmed that this positioning behavior decreases predation rate.
 Surprisingly, individuals with a poorer cryptic coloration made greater
 use of this positioning behavior, while individuals with a better cryptic
 coloration relied more on background color matching. Additionally,
 positioning behavior interacted with other anti-predation behaviors:
 individuals who were positioned on the space between bricks allowed
 potential predators to get closer before fleeing. These results indicate
 that these grasshoppers showed adaptive flexibility in camouflage and
 escape behaviors as a function of both individual and environmental
 variation. Such behavioral flexibility should allow organisms to cope
 better with novel environments, which deserves more study especially in
 the current context of global change.
description: Field
 dataField data. Grasshoppers
 using different strategies to improve camouflage: positioning behavior and
 background matching in a novel urban habitatfield_data.txtEscape-strategy dataEscape behavior data ( FID and flight distance) of grasshoppers in a urban habitatfid data.txtVirtual predation dataData from a virtual predation experiment (in a touch screen) of grasshoppers using different strategies of camouflage and humans as predators.virtual_predation.txtR codeR code used for statistical analyzes
DOI: 10.5061/dryad.5j13n
title: Data from: Sex, size and timing: sampling design for reliable population genetics analyses using microsatellite data

description: 1. Population genetics is used in a wide variety of fields such as ecology
 and biodiversity conservation. How estimated genetic characteristics of
 natural populations can be influenced by the sampling design has been a
 long-standing concern. Multiple simulation and empirical studies
 illustrated the influence of both sample size and polymorphism of markers.
 However, our review of studies on butterfly population genetics indicates
 no consensus on sample size for the estimation of genetic diversity or
 differentiation. Furthermore, other aspects of sampling design (sex ratio
 and timing of sampling) were not addressed and their potential impact on
 genetic parameter estimates rarely explored. 2. Using a large empirical
 dataset (with spatial and temporal replicates) collected on a butterfly
 species, Boloria aquilonaris, as well as simulated datasets reflecting (1)
 three scenarios of migration-genetic drift equilibrium and (2) one
 scenario of parameter stabilization after 100,000 generations, we
 quantified the impacts of three aspects of genetic sampling design (namely
 sample size, sex ratio, and timing of sampling) on the estimation of
 allele frequencies and its potential downstream impact on the estimation
 of genetic parameters. 3. With empirical data, we found that sample size
 and timing of sampling strongly affected the accuracy of allele
 frequencies and the downstream analyses, while sex ratio did not. Our
 results were consistent across spatial and temporal replicates. Also, with
 simulated data, we showed that the genetic sampling design had limited
 effect in systems where dispersal outweighs genetic drift, while it can
 have major consequences on our understanding of the genetic diversity and
 population differentiation in systems dominated by genetic drift (such as
 most study systems with conservation concerns). 4. We advocate for careful
 consideration of all aspects of the sampling design in population genetics
 studies, i.e. a sufficient number of samples, while ensuring similar sex
 ratio among sampling locations and collecting with timing appropriate to
 the question under study. This is particularly important when the study
 aims at species conservation.
description: EMPIRICAL allele
 frequencies and genetic parametersEMPIRICAL.zipSIMULATION allele frequencies and genetic parametersSIMULATION.zip
DOI: 10.17632/358b7pkg8z
title: FAU_Dataset

description: The Dataset includes the input file for reproducing the results of paper titled "Thermal transport in hard carbon using machine learning potential".
DOI: 10.17632/358b7pkg8z.1
title: FAU_Dataset

description: The Dataset includes the input file for reproducing the results of paper titled "Thermal transport in hard carbon using machine learning potential".
DOI: 10.5061/dryad.pg570
title: Data from: Chaos and the (un)predictability of evolution in a changing environment

description: Among the factors that may reduce the predictability of evolution, chaos,
 characterized by a strong dependence on initial conditions, has received
 much less attention than randomness due to genetic drift or environmental
 stochasticity. It was recently shown that chaos in phenotypic evolution
 arises commonly under frequency-dependent selection caused by competitive
 interactions mediated by many traits. This result has been used to argue
 that chaos should often make evolutionary dynamics unpredictable. However,
 populations also evolve largely in response to external changing
 environments, and such environmental forcing is likely to influence the
 outcome of evolution in systems prone to chaos. We investigate how a
 changing environment causing oscillations of an optimal phenotype
 interacts with the internal dynamics of an eco-evolutionary system that
 would be chaotic in a constant environment. We show that strong
 environmental forcing can improve the predictability of evolution, by
 reducing the probability of chaos arising, and by dampening the magnitude
 of chaotic oscillations. In contrast, weak forcing can increase the
 probability of chaos, but it also causes evolutionary trajectories to
 track the environment more closely. Overall, our results indicate that,
 although chaos may occur in evolution, it does not necessarily undermine
 its predictability.
description: example.RMinimal demonstration of the simulation and analysis used in the study.functionsMinimal demonstration of the simulation and analysis used in the study.dat_freq_chaos_const_envDataset with the frequency of chaos at each simulation time point for different values of dimensionality (number of traits) d.dat_chang_env_d70Datasets with results from all simulations of trajectories in 40 different conditions of oscillating optimum for d = 70.dat_chang_env_d40Datasets with results from all simulations of trajectories in 40 different conditions of oscillating optimum for d = 40.READMEDescription of all files.
DOI: 10.5061/dryad.5gs6p
title: Data from: Palaeoecological inferences for the fossil Australian snakes Yurlunggur and Wonambi (Serpentes, Madtsoiidae)

description: Madtsoiids are among the most basal snakes, with a fossil record dating
 back to the Upper Cretaceous (Cenomanian). Most representatives went
 extinct by the end of the Eocene, but some survived in Australia until the
 late Cenozoic. Yurlunggur and Wonambi are two of these late forms, and
 also the best-known madtsoiids to date. A better understanding of the
 anatomy and palaeoecology of these taxa may shed light on the evolution
 and extinction of this poorly known group of snakes and on early snake
 evolution in general. A digital endocast of the inner ear of Yurlunggur
 was compared to those of 81 species of snakes and lizards with known
 ecological preferences using three-dimensional geometric morphometrics.
 The inner ear of Yurlunggur most closely resembles both that of certain
 semiaquatic snakes and that of some semifossorial snakes. Other cranial
 and postcranial features of this snake support the semifossorial
 interpretation. While the digital endocast of the inner ear of Wonambi is
 too incomplete to be included in a geometric morphometrics study, its
 preserved morphology is very different from Yurlunggur and suggests a more
 generalist ecology. Osteology, palaeoclimatic data, and the
 palaeobiogeographic distribution of these two snakes are all consistent
 with these inferred ecological differences.
description: Supplementary
 MaterialSupplementary material
 S1 - Table S1: Specimen numbers, taxonomic authorities, and institutional
 abbreviations. Supplementary material S2: Landmarking procedure,
 replacement taxa, and supplementary figures. Supplementary material S3:
 Landmark coordinates of all taxa included in the study (.tps format).
 Supplementary material S4 - Table S2: Ecology of all the taxa included in
 the study and literature sources. Supplementary material S5: Scripts used
 to run the analyses in R.
DOI: 10.5061/dryad.jb7m1
title: Data from: Women's attractiveness is linked to expected age at menopause

description: A great number of studies have shown that features linked to immediate
 fertility explain a large part of the variance in female attractiveness.
 This is consistent with an evolutionary perspective, as men are expected
 to prefer females at the age at which fertility peaks (at least for
 short-term relationships) in order to increase their reproductive success.
 However, for long-term relationships, a high residual reproductive value
 (the expected future reproductive output, linked to age at menopause)
 becomes relevant as well. In that case, young age AND late menopause are
 expected to be preferred by men. However, the extent to which facial
 features provide cues to the likely age at menopause has never been
 investigated so far. Here, we show that expected age at menopause is
 linked to facial attractiveness of young women. As age at menopause is
 heritable, we used the mother’s age at menopause as a proxy for her
 daughter’s expected age of menopause. We found that men judged faces of
 women with a later expected age at menopause as more attractive than those
 of women with an earlier expected age at menopause. This result holds when
 age, cues of immediate fertility and facial ageing were controlled for.
 Additionally, we found that the expected age at menopause was not
 correlated with any of the other variables considered (including immediate
 fertility cues and facial ageing). Our results show the existence of a new
 correlate of women’s facial attractiveness, expected age at menopause,
 which is independent from immediate fertility cues and facial ageing.
description: data_bovet_2017_dryadResults of the attractiveness test. Each row of the table corresponds to one judgment (one pair). For each pair, the rater was instructed to click on the photograph depicting the woman he found the most attractive. The position of the photograph on the screen (left or right) was randomly ascribed. Each rater had 30 distinct pairs of photographs to assess, corresponding to 60 different women. The outcome variable is named “Score”: this binary variable corresponds to being chosen or not for the focal woman (arbitrarily the woman presented at the left position) during the presentation of each pair.