cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/b0d9fb08fdb37381b4b09e72ea948380
title: Lake Wingra Exclosure Experiment at North Temperate Lakes LTER: Physical Limnology 2005 - 2008

description: Starting in late summer 2005, Wisconsin Dept of Natural Resources (WDNR), Dane County, Friends of Lake Wingra (FOLW), and NTL-LTER initiated a 3-year experiment in Lake Wingra to test the response of the native macrophyte community to clearer water produced from a major carp reduction program. This demonstration-scale experiment includes the construction of a 1.0-hectare rectangular carp exclosure with its solid vinyl walls extending from the lake shoreline to a water depth of 2.9 meters. NTL-LTER conducts the routine limnological monitoring of the lake and exclosure and is leading the science evaluation of potential lake restoration activities. The exclosure experiment was terminated in the fall of 2008. The exclosure was removed from Lake Wingra at that time. Sampling is done both within the exclosure and at a control site located nearby in the littoral zone. The sample location within the exclosure is equidistant from the side walls and approximately 75 meters from the shore in a water depth of approximately 2.5 meters. The control site sample location is approximately 75 meters west of the exclosure sample site at the same approximate distance from shore and water depth. Samples are taken at the same time and on the same schedule as the NTL-LTER limnological sampling on Lake Wingra, e.g., biweekly spring through summer, every 4 weeks in the fall, and once during the winter depending on ice conditions. Parameters measured within the exclosure and at the control site include water temperature, dissolved oxygen, secchi depth and chlorophyll-a. Additional parameters measured only within the exclosure include total Kjeldahl nitrogen, nitrate + nitrite nitrogen, ammonia nitrogen, total phosphorus, dissolved reactive phosphorus and dissolved reactive silica. Parameters characterizing the physical limnology are measured within the exclosure and at a nearby control site in the littoral zone at 1-m depth intervals. Measured parameters in the data set include water temperature, dissolved oxygen, as well as the derived parameter percent oxygen saturation. Secchi disk depth is also measured. Auxiliary data include time of day, air temperature, cloud cover, wind speed and direction, and wave height. Sampling Frequency: generally bi-weekly during ice-free season from late March or early April through early September, then every 4 weeks through late November. Number of sites: 2
DOI: 10.5517/ccdc.csd.cc25w3mt
title: CCDC 2022056: Experimental Crystal Structure Determination

description: Related Article: Ewa Żesławska, Katarzyna Kucwaj-Brysz, Annamária Kincses, Gabriella Spengler, Ewa Szymańska, Anna Czopek, Małgorzata Anna Marć, Aneta Kaczor, Wojciech Nitek, Enrique Domínguez-Álvarez, Gniewomir Latacz, Katarzyna Kieć-Kononowicz, Jadwiga Handzlik|2021|Bioorg.Chem.|109|104735|doi:10.1016/j.bioorg.2021.104735
DOI: 10.5517/ccdc.csd.cc25w3nv
title: CCDC 2022057: Experimental Crystal Structure Determination

description: Related Article: Ewa Żesławska, Katarzyna Kucwaj-Brysz, Annamária Kincses, Gabriella Spengler, Ewa Szymańska, Anna Czopek, Małgorzata Anna Marć, Aneta Kaczor, Wojciech Nitek, Enrique Domínguez-Álvarez, Gniewomir Latacz, Katarzyna Kieć-Kononowicz, Jadwiga Handzlik|2021|Bioorg.Chem.|109|104735|doi:10.1016/j.bioorg.2021.104735
DOI: 10.5517/ccdc.csd.cc25w3pw
title: CCDC 2022058: Experimental Crystal Structure Determination

description: Related Article: Ewa Żesławska, Katarzyna Kucwaj-Brysz, Annamária Kincses, Gabriella Spengler, Ewa Szymańska, Anna Czopek, Małgorzata Anna Marć, Aneta Kaczor, Wojciech Nitek, Enrique Domínguez-Álvarez, Gniewomir Latacz, Katarzyna Kieć-Kononowicz, Jadwiga Handzlik|2021|Bioorg.Chem.|109|104735|doi:10.1016/j.bioorg.2021.104735
DOI: 10.5281/zenodo.5676469
title: Light pollution affects invasive and native plant traits important to plant competition and herbivorous insects

description: Dataset that goes with our accepted publication in Biological Invasions entitled "Light pollution affects invasive and native plant traits important to plant competition and herbivorous insects"
DOI: 10.17632/7yfsv5wyk4.1
title: Controls on Alkenone Carbon Isotope Fractionation in the Modern Ocean – Supporting Data

description: Here we present data from the article "Controls on Alkenone Carbon Isotope Fractionation in the Modern Ocean." This study explores carbon isotope fractionation in alkenone biomarkers (Ep37:2)––produced by Noelaerhabdaceae coccolithophores––that were recovered from modern suspended particulate organic matter and core-top/late Holocene sediments. We evaluate the influence of CO2, coccolithophore cell size, growth rate, and irradiance on Ep37:2 and test whether observations and quantitative relationships derived from laboratory cultures are applicable to the natural environment. This dataset contains two files. (1) A compilation of coretop and particulate alkenone carbon isotope measurements, as well as coretop alkenone carbon isotope data and coccolith size data generated in this study. This datafile also includes oceanographic data, metadata, and other derived parameters used to conduct the analyses in the study. (2) Estimates of biomass-weighted Noelaerhabdaceae coccolith length and cell radius from a compilation of core-top and water-column samples of Noelaerhabdaceae species abundance and coccolith size measurements. This dataset was used to generate estimates of coccolith length for samples in the alkenone carbon isotope compilation where no measurements were conducted or reported.
DOI: 10.17632/wwm4zwbgrc.1
title: Use of Hydrogen as Electron Donor to Solventogenesis of Volatile Organic Acids

description: Raw data of alcohol production and volatile organic acids consumption using hydrogen for batch experiments to evaluate the solventogenic metabolism. Metagenomic sequencing data (16S rRNA) and analysis are included. 16S DNA sequencing data and metadata is available at MG-RAST (https://www.mg-rast.org/linkin.cgi?project=mgp10094).
DOI: 10.5281/zenodo.5676477
title: Zoanthus sansibaricus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.5676476
title: Zoanthus sansibaricus decontaminated FSCR

description: .
DOI: 10.6084/m9.figshare.14864769
title: clean_data

description: This item contains fish swimming speed (ucrit) and morphological measurement datasets. This data is currently submitted for publication in Scientific Data. Please wait for an updated citation before using this data in publications.
DOI: 10.6084/m9.figshare.14864769.v4
title: clean_data

description: This item contains fish swimming speed (ucrit) and morphological measurement datasets. This data is currently submitted for publication in Scientific Data. Please wait for an updated citation before using this data in publications.
DOI: 10.6084/m9.figshare.11373969
title: Understanding perceptions of the state of the environment in relation to ecological measures: Intergroup differences and the influences of an interpretive program

description: This research project examined how the state of the environment is understood through an ecological and social perspective. Emphasis is placed on ecological measures as well as perceptions, with specific attention to intergroup differences and the influences of an interpretive program. Two studies were conducted at the Niagara Glen Nature Reserve, a protected area in the Niagara Region of Canada. The first study consisted of an ecological assessment and a survey administered to experts and visitors. The second study involved administering the survey to individuals receiving two different educational interventions, thereby exploring the influence of an environmental interpretive program on how people perceive the environment. Raw data, summary data, and procedure details included here.<br>
DOI: 10.6084/m9.figshare.11373969.v2
title: Understanding perceptions of the state of the environment in relation to ecological measures: Intergroup differences and the influences of an interpretive program

description: This research project examined how the state of the environment is understood through an ecological and social perspective. Emphasis is placed on ecological measures as well as perceptions, with specific attention to intergroup differences and the influences of an interpretive program. Two studies were conducted at the Niagara Glen Nature Reserve, a protected area in the Niagara Region of Canada. The first study consisted of an ecological assessment and a survey administered to experts and visitors. The second study involved administering the survey to individuals receiving two different educational interventions, thereby exploring the influence of an environmental interpretive program on how people perceive the environment. Raw data, summary data, and procedure details included here.<br>
DOI: 10.6084/m9.figshare.11373969.v1
title: Understanding perceptions of the state of the environment in relation to ecological measures: Intergroup differences and the influences of an interpretive program

description: This research project examined how the state of the environment is understood through an ecological and social perspective. Emphasis is placed on ecological measures as well as perceptions, with specific attention to intergroup differences and the influences of an interpretive program. Two studies were conducted at the Niagara Glen Nature Reserve, a protected area in the Niagara Region of Canada. The first study consisted of an ecological assessment and a survey administered to experts and visitors. The second study involved administering the survey to individuals receiving two different educational interventions, thereby exploring the influence of an environmental interpretive program on how people perceive the environment. Raw data, summary data, and procedure details included here.<br>
DOI: 10.26186/145905
title: Officer Basin South Australia 2021 Seismic Reprocessing Processed data Package

description: Geoscience Australia commissioned reprocessing of selected legacy 2D seismic data in the Officer Basin in South Australia as part of the Exploring for the Future (EFTF) program. Reprocessing of these data occurred between April 2021 and August 2021. This seismic data release package contains reprocessed data from five surveys acquired between 1966 and 1987. In total it contains approximately 1425 km of industry 2D reflection seismic data comprising of 25 lines from 5 separate vintages. The seismic surveys include the Serpentine Lakes Reconnaissance Survey, 1966; the Everard Survey, 1974; the Marla Bore Survey, 1984; the Ungoolya, Giles and Marla-Byilkaoora Surveys, 1985; and the Amoco Officer Basin Survey, 1987 and cover areas within the Officer Basin in South Australia. The objective of the seismic reprocessing was to produce processed 2D land seismic reflection datasets using the latest processing techniques to improve continuity and data quality over legacy processing. In particular, the purpose of the reprocessing was to image the structure and stratigraphic architecture of the Neoproterozoic to Paleozoic Officer Basin in this area. All vintages except the 1966 Serpentine lakes survey were processed to Pre-stack Time Migration as well as Post-Stack Time Migration. The 1966 Serpentine Lakes Survey was processed only to Post-Stack Time Migration. <b>The Velseis data package is available on request from clientservices@ga.gov.au - Quote eCat# 145905</b>
DOI: 10.5517/ccdc.csd.cc26fqs5
title: CCDC 2038987: Experimental Crystal Structure Determination

description: Related Article: Bin Zhu, Zhenyu Yao, Lang Huang, Xiuling Cui|2021|Chem.Commun.|57|12012|doi:10.1039/D1CC04359E
DOI: 10.15468/j5uahy
title: New species of the genus Ptychoptera Meigen, 1803 (Diptera, Ptychopteridae) from Zhejiang, China with an updated key to Chinese species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Shao, Jiaqi, Kang, Zehui (2021): New species of the genus Ptychoptera Meigen, 1803 (Diptera, Ptychopteridae) from Zhejiang, China with an updated key to Chinese species. ZooKeys 1070: 87-99, DOI: http://dx.doi.org/10.3897/zookeys.1070.67779, URL: http://dx.doi.org/10.3897/zookeys.1070.67779
DOI: 10.15468/s546g3
title: Two new species of the genus Ptychoptera Meigen, 1803 (Diptera, Ptychopteridae) from Yunnan, China with remarks on the distribution of Chinese species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhang, Xiao, Kang, Zehui (2021): Two new species of the genus Ptychoptera Meigen, 1803 (Diptera, Ptychopteridae) from Yunnan, China with remarks on the distribution of Chinese species. ZooKeys 1070: 73-86, DOI: http://dx.doi.org/10.3897/zookeys.1070.58859, URL: http://dx.doi.org/10.3897/zookeys.1070.58859
DOI: 10.15468/5z853h
title: Two new species of snail-eating snakes of the genus Tropidodipsas (Serpentes, Dipsadidae) from southern Mexico, with notes on related species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gruenwald, Christoph I., Toribio-Jimenez, Sarahi, Montano-Ruvalcaba, Carlos, Franz-Chavez, Hector, Penaloza-Montano, Miguel A., Barrera-Nava, Eduardo Y., Jones, Jason M., Rodriguez, Christopher M., Hughes, India M., Strickland, Jason L., Reyes-Velasco, Jacobo (2021): Two new species of snail-eating snakes of the genus Tropidodipsas (Serpentes, Dipsadidae) from southern Mexico, with notes on related species. Herpetozoa 34: 233-257, DOI: http://dx.doi.org/10.3897/herpetozoa.34.e69176, URL: http://dx.doi.org/10.3897/herpetozoa.34.e69176
DOI: 10.25345/c5c86z
title: MassIVE MSV000088351 - Targeted metabolomics of liver after FGF1 injection
title: We have performed measured levels of metabolites involved in gluconeogenesis in liver. Over-night fasted ob ob mice that were injected with vehicle or FGF1 for 2h were used for the analysis.
DOI: 10.7910/dvn/xwyjwf
title: Local News COVID-19

description: Datasets and R code
DOI: 10.5281/zenodo.5602234
title: Z'/QCD Jets for Mass Generalisation

description: A collection of 10 Z'/QCD jet datasets used in <em>Meta-learning and data augmentation for mass-generalised jet taggers</em>. Each dataset contains 500K Z' jets and 500K QCD jets. <strong>Simulation</strong> Events are simulated with <em>MadGraph5 2.8.0</em>, showered in <em>Pythia 8.244</em>, then passed to <em>Delphes 3.4.2</em> with the default CMS card. For the signal, we use a simple Z' model from <em>FeynRules</em>. In each event, the leading \(R=1\) anti-kt jet is selected.<strong> </strong> <strong>Cuts</strong> Parton-level cuts of \(|\eta_J|, |\eta_{Z'}|&lt;2.0\) and \(\not\!\!E_T&gt;1.2\) TeV are applied in <em>MadGraph</em>. Cuts of \(|m_J-m_{Z'}|&lt;m_{Z'}/4\) and \(p_{T}&gt;1.2\) TeV are applied after detector simulation. <strong>Preprocessing</strong> Jets are preprocessed by first translating all constituents in the rapidity-azimuth plane such that the leading constituent lies at the origin. A rotation is then applied to position the centre of momentum below the origin. <strong>Format</strong> Each jet is stored as a list of constituent information in the format \((p_T/p_{T,J}, \eta', \phi', g(\texttt{pdg_id}))\) where \(\eta'\) and \(\phi'\) respectively denote pseudorapidity and azimuthal angle coordinates after the mentioned transformations and \(g\) maps Particle Data Group Monte Carlo identifiers to small floats. Specifically: <strong>Particle</strong> \(\gamma\) \(e^+\) \(e^-\) \(\mu^+\) \(\mu^-\) Neutral Hadron \(\pi^-\) \(\pi^+\) \(K^-\) \(K^+\) \(\bar{p}\) \(p\) pdg_id 22 -11 11 -13 13 0 -211 211 -321 321 -2212 2212 g( pdg_id ) 0.05 0.15 0.25 0.35 0.45 0.55 0.65 0.75 0.85 0.95 1.05 1.15 The arrays are serialised and saved in <em>TFRecord</em> format allowing for efficient interfacing with <em>Tensorflow. </em>To avoid<em> </em>memory issues associated with loading a large number of datasets, each dataset is split into 100 shards.
DOI: 10.5281/zenodo.5602233
title: Z'/QCD Jets for Mass Generalisation

description: A collection of 10 Z'/QCD jet datasets used in <em>Meta-learning and data augmentation for mass-generalised jet taggers</em>. Each dataset contains 500K Z' jets and 500K QCD jets. <strong>Simulation</strong> Events are simulated with <em>MadGraph5 2.8.0</em>, showered in <em>Pythia 8.244</em>, then passed to <em>Delphes 3.4.2</em> with the default CMS card. For the signal, we use a simple Z' model from <em>FeynRules</em>. In each event, the leading \(R=1\) anti-kt jet is selected.<strong> </strong> <strong>Cuts</strong> Parton-level cuts of \(|\eta_J|, |\eta_{Z'}|&lt;2.0\) and \(\not\!\!E_T&gt;1.2\) TeV are applied in <em>MadGraph</em>. Cuts of \(|m_J-m_{Z'}|&lt;m_{Z'}/4\) and \(p_{T}&gt;1.2\) TeV are applied after detector simulation. <strong>Preprocessing</strong> Jets are preprocessed by first translating all constituents in the rapidity-azimuth plane such that the leading constituent lies at the origin. A rotation is then applied to position the centre of momentum below the origin. <strong>Format</strong> Each jet is stored as a list of constituent information in the format \((p_T/p_{T,J}, \eta', \phi', g(\texttt{pdg_id}))\) where \(\eta'\) and \(\phi'\) respectively denote pseudorapidity and azimuthal angle coordinates after the mentioned transformations and \(g\) maps Particle Data Group Monte Carlo identifiers to small floats. Specifically: <strong>Particle</strong> \(\gamma\) \(e^+\) \(e^-\) \(\mu^+\) \(\mu^-\) Neutral Hadron \(\pi^-\) \(\pi^+\) \(K^-\) \(K^+\) \(\bar{p}\) \(p\) pdg_id 22 -11 11 -13 13 0 -211 211 -321 321 -2212 2212 g( pdg_id ) 0.05 0.15 0.25 0.35 0.45 0.55 0.65 0.75 0.85 0.95 1.05 1.15 The arrays are serialised and saved in <em>TFRecord</em> format allowing for efficient interfacing with <em>Tensorflow. </em>To avoid<em> </em>memory issues associated with loading a large number of datasets, each dataset is split into 100 shards.
DOI: 10.6084/m9.figshare.16669747
title: Ontogenetic changes in limb posture, kinematics, forces, and joint moments in American alligators (Alligator mississippiensis)

description: Tables A1-2_body size speed and stride parameters; Tables A3-12_limb joint angles; Tables A13-18_ground reaction force; Tables A19-28_limb joint moments
DOI: 10.6084/m9.figshare.16669747.v1
title: Ontogenetic changes in limb posture, kinematics, forces, and joint moments in American alligators (Alligator mississippiensis)

description: Tables A1-2_body size speed and stride parameters; Tables A3-12_limb joint angles; Tables A13-18_ground reaction force; Tables A19-28_limb joint moments
DOI: 10.23641/asha.16959376.v1
title: Unfolding of cognitive effort in aphasia (Chapman & Hallowell, 2021)

description: <b>Purpose: </b>Arousal and cognitive effort are relevant yet often overlooked components of attention during language processing. Pupillometry can be used to provide a psychophysiological index of arousal and cognitive effort. Given that much is unknown regarding the relationship between cognition and language deficits seen in people with aphasia (PWA), pupillometry may be uniquely suited to explore those relationships. The purpose of this study was to examine arousal and the time course of the allocation of cognitive effort related to sentence processing in people with and without aphasia.<b>Method: </b>Nineteen PWA and age- and education-matched control participants listened to relatively easy (subject-relative) and relatively difficult (object-relative) sentences and were required to answer occasional comprehension questions. Tonic and phasic pupillary responses were used to index arousal and the unfolding of cognitive effort, respectively, while sentences were processed. Group differences in tonic and phasic responses were examined.<b>Results:</b> Group differences were observed for both tonic and phasic responses. PWA exhibited greater overall arousal throughout the task compared with controls, as evidenced by larger tonic pupil responses. Controls exhibited more effort (greater phasic responses) for difficult compared with easy sentences; PWA did not. Group differences in phasic responses were apparent during end-of-sentence and postsentence time windows.<b>Conclusions: </b>Results indicate that the attentional state of PWA in this study was not consistently supportive of adequate task engagement. PWA in our sample may have relatively limited attentional capacity or may have challenges with allocating existing capacity in ways that support adequate task engagement and performance. This work adds to the body of evidence supporting the validity of pupillometric tasks for the study of aphasia and contributes to a better understanding of the nature of language deficits in aphasia.<br><b>Supplemental Material S1.</b> PWA detailed neuroimaging information. <br>Chapman, L. R., & Hallowell, B. (2021). The unfolding of cognitive effort during sentence processing: Pupillometric evidence from people with and without aphasia.<i> Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2021_JSLHR-21-00129
DOI: 10.23641/asha.16959376
title: Unfolding of cognitive effort in aphasia (Chapman & Hallowell, 2021)

description: <b>Purpose: </b>Arousal and cognitive effort are relevant yet often overlooked components of attention during language processing. Pupillometry can be used to provide a psychophysiological index of arousal and cognitive effort. Given that much is unknown regarding the relationship between cognition and language deficits seen in people with aphasia (PWA), pupillometry may be uniquely suited to explore those relationships. The purpose of this study was to examine arousal and the time course of the allocation of cognitive effort related to sentence processing in people with and without aphasia.<b>Method: </b>Nineteen PWA and age- and education-matched control participants listened to relatively easy (subject-relative) and relatively difficult (object-relative) sentences and were required to answer occasional comprehension questions. Tonic and phasic pupillary responses were used to index arousal and the unfolding of cognitive effort, respectively, while sentences were processed. Group differences in tonic and phasic responses were examined.<b>Results:</b> Group differences were observed for both tonic and phasic responses. PWA exhibited greater overall arousal throughout the task compared with controls, as evidenced by larger tonic pupil responses. Controls exhibited more effort (greater phasic responses) for difficult compared with easy sentences; PWA did not. Group differences in phasic responses were apparent during end-of-sentence and postsentence time windows.<b>Conclusions: </b>Results indicate that the attentional state of PWA in this study was not consistently supportive of adequate task engagement. PWA in our sample may have relatively limited attentional capacity or may have challenges with allocating existing capacity in ways that support adequate task engagement and performance. This work adds to the body of evidence supporting the validity of pupillometric tasks for the study of aphasia and contributes to a better understanding of the nature of language deficits in aphasia.<br><b>Supplemental Material S1.</b> PWA detailed neuroimaging information. <br>Chapman, L. R., & Hallowell, B. (2021). The unfolding of cognitive effort during sentence processing: Pupillometric evidence from people with and without aphasia.<i> Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2021_JSLHR-21-00129
DOI: 10.15468/gm9sbx
title: Eupleridae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Don E. Wilson, Russell A. Mittermeier (2009): Eupleridae. In: Handbook of the Mammals of the World – Volume 1 Carnivores. Barcelona: Lynx Edicions: 330-351, DOI: http://doi.org/10.5281/zenodo.5676533
DOI: 10.5517/ccdc.csd.cc26yb1k
title: CCDC 2053968: Experimental Crystal Structure Determination

description: Related Article: Jingwen Xu, Xing Wu, Jingjing Guo, Zujin Zhao, Ben Zhong Tang|2021|J.Mater.Chem.C|9|15505|doi:10.1039/D1TC03937G