cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12012093.v1
title: Supplementary Tables S1 to S5 from Differential impact of severe drought on infant mortality in two sympatric neotropical primates

description: Extreme climate events can have important consequences for the dynamics of natural populations, and severe droughts are predicted to become more common and intense due to climate change. We analysed infant mortality in relation to drought in two primate species (white-faced capuchins, <i>Cebus capucinus imitator,</i> and Geoffroy's spider monkeys, <i>Ateles geoffroyi</i>) in a tropical dry forest in northwestern Costa Rica. Our survival analyses combine several rare and valuable long-term datasets, including long-term primate life-history, landscape-scale fruit abundance, food-tree mortality, and climate conditions. Infant capuchins showed a threshold mortality response to drought, with exceptionally high mortality during a period of intense drought, but not during periods of moderate water shortage. By contrast, spider monkey females stopped reproducing during severe drought, and the mortality of infant spider monkeys peaked later during a period of low fruit abundance and high food-tree mortality linked to the drought. These divergent patterns implicate differing physiology, behaviour or associated factors in shaping species-specific drought responses. Our findings link predictions about the Earth's changing climate to environmental influences on primate mortality risk and thereby improve our understanding of how the increasing severity and frequency of droughts will affect the dynamics and conservation of wild primates.
DOI: 10.6084/m9.figshare.12011841
title: Differential Gene Expression PHEO vs EHT

description: Differential Gene expression profile of circulating CD14+ MACS-isolated monocytes of 6 pheochromocytoma patients vs 6 essential hypertension controls. Groups were compared, corrected for sex.
DOI: 10.6084/m9.figshare.12011844
title: Data for: Real-time tracking of protein unfolding with time-resolved X-ray solution scattering

description: This data is from a study, investigating the thermally induced unfolding of apomyoglobin.<br><br>Contained herein is processed X-ray scattering data. This is SAXS data for apomyoglobin at 50C and TRXSS difference data (10 ns to 600 µs) following a ca. 10C temperature jump. Also available is the code that was used to perform structural modeling of the scattering data using a genetic algorithm.
DOI: 10.6084/m9.figshare.12011841.v1
title: Differential Gene Expression PHEO vs EHT

description: Differential Gene expression profile of circulating CD14+ MACS-isolated monocytes of 6 pheochromocytoma patients vs 6 essential hypertension controls. Groups were compared, corrected for sex.
DOI: 10.6084/m9.figshare.12011832
title: Black sea bath growth data

description: growth data for black sea bass juveniles from New York estuaries
DOI: 10.6084/m9.figshare.12011829
title: PM-RGC-part09-26

description: Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics
DOI: 10.6084/m9.figshare.12011832.v1
title: Black sea bath growth data

description: growth data for black sea bass juveniles from New York estuaries
DOI: 10.6084/m9.figshare.12011811
title: Population genomics and evolution of Avian Pathogenic E. coli

description: Chickens are the most common birds on earth and colibacillosis in among the most common diseases affecting them. This major threat to animal welfare and safe sustainable food production is difficult to combat because the etiological agent, avian pathogenic<i> Escherichia coli </i>(APEC), emerges from ubiquitous commensal gut bacteria, with no one virulence gene present in all pathogenic isolates. Here we address the underlying evolutionary mechanisms of extraintestinal spread and systemic infection. Combining population scale comparative genomics and pangenome-wide association studies, we compare <i>E. coli </i>from commensal carriage and systemic infections. We identify phylogroup-specific and species-wide genetic elements that are enriched in APEC, including pathogenicity-associated variation in 143 genes that have diverse predicted functions, including genes involved in metabolism, lipopolysaccharide synthesis, heat shock response, antimicrobial resistance and toxicity. Horizontal gene transfer spreads pathogenicity elements, allowing divergent clones to cause infection. Finally, Random Forest model prediction of disease status (carriage vs. disease) identifies pathogenicity elements in the emergent ST-117 poultry-associated lineage with 73% accuracy, demonstrating the potential for early identification emergent APEC in healthy flocks.
DOI: 10.6084/m9.figshare.12011829.v1
title: PM-RGC-part09-16

description: Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics
DOI: 10.6084/m9.figshare.12011829.v2
title: PM-RGC-part09-16

description: Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics
DOI: 10.6084/m9.figshare.12011829.v3
title: PM-RGC-part09-26

description: Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics
DOI: 10.6084/m9.figshare.12011829.v4
title: PM-RGC-part09-26

description: Structure and Function of the Arctic and Antarctic Marine Microbiota as Revealed by Metagenomics
DOI: 10.15468/f7zauz
title: The Yponomeutidae of the Afrotropical region (Lepidoptera: Yponomeutoidea)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Agassiz, David J. L. (2019): The Yponomeutidae of the Afrotropical region (Lepidoptera: Yponomeutoidea). Zootaxa 4600 (1): 1-69, DOI: https://doi.org/10.11646/zootaxa.4600.1.1
DOI: 10.6084/m9.figshare.12011523
title: Metadata record for: A fine-tuned global distribution dataset of marine forests

description: This dataset contains key characteristics about the data described in the Data Descriptor A fine-tuned global distribution dataset of marine forests. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12011523.v1
title: Metadata record for: A fine-tuned global distribution dataset of marine forests

description: This dataset contains key characteristics about the data described in the Data Descriptor A fine-tuned global distribution dataset of marine forests. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12011343
title: SoftwareMetrics Aggregator, Examples

description: Examples of results obtained with the developed Aggregator (https://github.com/SoftengPoliTo/SoftwareMetrics).<br>This item is referenced by my master degree thesis.<br>March 2020.
DOI: 10.6084/m9.figshare.12011343.v1
title: SoftwareMetrics Aggregator, Examples.

description: Examples of results obtained with the developed Aggregator (https://github.com/SoftengPoliTo/SoftwareMetrics).<br>This item is referenced by my master degree thesis.<br>March 2020.
DOI: 10.6084/m9.figshare.12011343.v2
title: SoftwareMetrics Aggregator, Examples.

description: Examples of results obtained with the developed Aggregator (https://github.com/SoftengPoliTo/SoftwareMetrics).<br>This item is referenced by my master degree thesis.<br>March 2020.
DOI: 10.6084/m9.figshare.12011343.v4
title: SoftwareMetrics Aggregator, Examples

description: Examples of results obtained with the developed Aggregator (https://github.com/SoftengPoliTo/SoftwareMetrics).<br>This item is referenced by my master degree thesis.<br>March 2020.
DOI: 10.6084/m9.figshare.12011343.v3
title: SoftwareMetrics Aggregator, Examples.

description: Examples of results obtained with the developed Aggregator (https://github.com/SoftengPoliTo/SoftwareMetrics).<br>This item is referenced by my master degree thesis.<br>March 2020.
DOI: 10.6084/m9.figshare.12011256
title: Supplementary Material for: Exposure to Medical Radiation during Fetal Life, Childhood and Adolescence and Risk of Brain Tumor in Young Age: Results from The MOBI-Kids Case-Control Study

description: <b><i>Background:</i></b> We explored the association between ionizing radiation (IR) from pre-natal and post-natal radio-diagnostic procedures and brain cancer risk within the MOBI-kids study. <b><i>Methods:</i></b> MOBI-kids is an international (Australia, Austria, Canada, France, Germany, Greece, India, Israel, Italy, Japan, Korea, New Zealand, Spain, The Netherlands) case-control study including 899 brain tumor (645 neuroepithelial) cases aged 10–24 years and 1,910 sex-, age-, country-matched controls. Medical radiological history was collected through personal interview. We estimated brain IR dose for each procedure, building a look-up table by age and time period. Lifetime cumulative doses were calculated using 2 and 5 years lags from the diagnostic date. Risk was estimated using conditional logistic regression. Neurological, psychological and genetic conditions were evaluated as potential confounders. The main analyses focused on neuroepithelial tumors. <b><i>Results:</i></b> Overall, doses were very low, with a skewed distribution (median 0.02 mGy, maximum 217 mGy). ORs for post-natal exposure were generally below 1. ORs were increased in the highest dose categories both for post and pre-natal exposures: 1.63 (95% CI 0.44–6.00) and 1.55 (0.57–4.23), respectively, based on very small numbers of cases. The change in risk estimates after adjustment for medical conditions was modest. <b><i>Conclusions:</i></b> There was little evidence for an association between IR from radio-diagnostic procedures and brain tumor risk in children and adolescents. Though doses were very low, our results suggest a higher risk for pre-natal and early life exposure, in line with current evidence.
DOI: 10.6084/m9.figshare.12011256.v1
title: Supplementary Material for: Exposure to Medical Radiation during Fetal Life, Childhood and Adolescence and Risk of Brain Tumor in Young Age: Results from The MOBI-Kids Case-Control Study

description: <b><i>Background:</i></b> We explored the association between ionizing radiation (IR) from pre-natal and post-natal radio-diagnostic procedures and brain cancer risk within the MOBI-kids study. <b><i>Methods:</i></b> MOBI-kids is an international (Australia, Austria, Canada, France, Germany, Greece, India, Israel, Italy, Japan, Korea, New Zealand, Spain, The Netherlands) case-control study including 899 brain tumor (645 neuroepithelial) cases aged 10–24 years and 1,910 sex-, age-, country-matched controls. Medical radiological history was collected through personal interview. We estimated brain IR dose for each procedure, building a look-up table by age and time period. Lifetime cumulative doses were calculated using 2 and 5 years lags from the diagnostic date. Risk was estimated using conditional logistic regression. Neurological, psychological and genetic conditions were evaluated as potential confounders. The main analyses focused on neuroepithelial tumors. <b><i>Results:</i></b> Overall, doses were very low, with a skewed distribution (median 0.02 mGy, maximum 217 mGy). ORs for post-natal exposure were generally below 1. ORs were increased in the highest dose categories both for post and pre-natal exposures: 1.63 (95% CI 0.44–6.00) and 1.55 (0.57–4.23), respectively, based on very small numbers of cases. The change in risk estimates after adjustment for medical conditions was modest. <b><i>Conclusions:</i></b> There was little evidence for an association between IR from radio-diagnostic procedures and brain tumor risk in children and adolescents. Though doses were very low, our results suggest a higher risk for pre-natal and early life exposure, in line with current evidence.
DOI: 10.6084/m9.figshare.12011175
title: Sensitivity Study Parameter Values from Factors affecting optic nerve head biomechanics in a rat model of glaucoma

description: Comma-delimited text file containing all parameter values utilized in the sensitivity study. The first row in the file contains parameter names. The first column contains model numbers. Model iterations are listed row-wise.
DOI: 10.6084/m9.figshare.12011175.v1
title: Sensitivity Study Parameter Values from Factors affecting optic nerve head biomechanics in a rat model of glaucoma

description: Comma-delimited text file containing all parameter values utilized in the sensitivity study. The first row in the file contains parameter names. The first column contains model numbers. Model iterations are listed row-wise.
DOI: 10.6084/m9.figshare.12011163
title: Strain Data from Sensitivity Study from Factors affecting optic nerve head biomechanics in a rat model of glaucoma

description: Comma-delimited text file containing strain outcome measures from each model iteration. The first row contains column titles: Model Number, 95<sup>th</sup> percentile first principal strain, and 5<sup>th</sup> percentile third principal strain. Model instances are listed row-wise. NaNs are inserted where the simulation failed due to an unknown FEBio error.
DOI: 10.6084/m9.figshare.12011163.v1
title: Strain Data from Sensitivity Study from Factors affecting optic nerve head biomechanics in a rat model of glaucoma

description: Comma-delimited text file containing strain outcome measures from each model iteration. The first row contains column titles: Model Number, 95<sup>th</sup> percentile first principal strain, and 5<sup>th</sup> percentile third principal strain. Model instances are listed row-wise. NaNs are inserted where the simulation failed due to an unknown FEBio error.
DOI: 10.6084/m9.figshare.12011127
title: Extended Data.docx

description: Extended data section for Chloroquine prevention of coronavirus disease (COVID-19) in the healthcare setting; protocol for a randomised, placebo-controlled prophylaxis study (COPCOV)
DOI: 10.6084/m9.figshare.12011127.v1
title: Extended Data.docx

description: Extended data section for Chloroquine prevention of coronavirus disease (COVID-19) in the healthcare setting; protocol for a randomised, placebo-controlled prophylaxis study (COPCOV)
DOI: 10.6084/m9.figshare.12011019
title: Species-specific or generic allometric equations: which option is better when estimating the biomass of Mexican tropical humid forests?

description: The aim of this study has been to compare the aboveground biomass (AGB) in six tropical forests in southeastern Mexico using generic and species-specific models at tree, species, and community levels. The dbh of 2,352 trees ≥10 cm was measured at 115 plots. AGB was estimated using Chave et al.’s generic model, with the most reliable specific equations extracted from the literature and online databases. Overall, we found 45 specific models applicable to 55.4% of the species present. In 30% of the species examined, there was a difference in AGB between the different methods used. Using specific equations at the community level, the estimate for AGB increased by 9.1% (<i>x</i> = 166.6 Mg ha<sup>−1</sup> ± 27.5 SD) compared to the generic model alone (<i>p</i>
DOI: 10.6084/m9.figshare.12011016
title: Supplementary Material for: Carotid Artery Stenosis Is Associated with Better Intracranial Collateral Circulation in Stroke Patients

description: <b><i>Background:</i></b> Adequate collateral circulation improves the clinical outcome of ischemic stroke patients. We evaluated the influence of ipsilateral carotid stenosis on intracranial collateral circulation in acute stroke patients. <b><i>Methods:</i></b> We collected the data of 385 consecutive acute stroke patients who underwent mechanical thrombectomy after multimodal computed tomography (CT) imaging in a single high-volume stroke center. Patients with occlusion of the first segment (M1) segment of the middle cerebral artery were included. We recorded baseline clinical, laboratory, procedural, and imaging variables and technical, imaging, and clinical outcomes. The effect of carotid stenosis on intracranial collateral circulation was studied with appropriate statistical tests and ordinal regression analysis. <b><i>Results:</i></b> Fifty out of the 247 patients eligible for analysis had severe ipsilateral carotid stenosis (≥75%). These patients were 4-times more likely to have very good intracranial collaterals (Collateral Score 3–4, <i>p</i> = 0.001) than the nonstenotic and slightly stenotic (&lt;75%) patients. The severely stenotic patients had a longer mean operation time (41 vs. 29 min to reperfusion, respectively, <i>p</i> = 0.001). Nevertheless, 54% of severely stenotic patients had good 3-month clinical outcome (modified Rankin Scale ≤2) with no significant difference between the 2 groups. <b><i>Conclusions:</i></b> Carotid artery stenosis of over 75% of vessel diameter was associated with better intracranial collateral circulation of patients with acute ischemic stroke. This did not significantly change the 3-month clinical outcome.
DOI: 10.6084/m9.figshare.12011016.v1
title: Supplementary Material for: Carotid Artery Stenosis Is Associated with Better Intracranial Collateral Circulation in Stroke Patients

description: <b><i>Background:</i></b> Adequate collateral circulation improves the clinical outcome of ischemic stroke patients. We evaluated the influence of ipsilateral carotid stenosis on intracranial collateral circulation in acute stroke patients. <b><i>Methods:</i></b> We collected the data of 385 consecutive acute stroke patients who underwent mechanical thrombectomy after multimodal computed tomography (CT) imaging in a single high-volume stroke center. Patients with occlusion of the first segment (M1) segment of the middle cerebral artery were included. We recorded baseline clinical, laboratory, procedural, and imaging variables and technical, imaging, and clinical outcomes. The effect of carotid stenosis on intracranial collateral circulation was studied with appropriate statistical tests and ordinal regression analysis. <b><i>Results:</i></b> Fifty out of the 247 patients eligible for analysis had severe ipsilateral carotid stenosis (≥75%). These patients were 4-times more likely to have very good intracranial collaterals (Collateral Score 3–4, <i>p</i> = 0.001) than the nonstenotic and slightly stenotic (&lt;75%) patients. The severely stenotic patients had a longer mean operation time (41 vs. 29 min to reperfusion, respectively, <i>p</i> = 0.001). Nevertheless, 54% of severely stenotic patients had good 3-month clinical outcome (modified Rankin Scale ≤2) with no significant difference between the 2 groups. <b><i>Conclusions:</i></b> Carotid artery stenosis of over 75% of vessel diameter was associated with better intracranial collateral circulation of patients with acute ischemic stroke. This did not significantly change the 3-month clinical outcome.
DOI: 10.6084/m9.figshare.12011019.v1
title: Species-specific or generic allometric equations: which option is better when estimating the biomass of Mexican tropical humid forests?

description: The aim of this study has been to compare the aboveground biomass (AGB) in six tropical forests in southeastern Mexico using generic and species-specific models at tree, species, and community levels. The dbh of 2,352 trees ≥10 cm was measured at 115 plots. AGB was estimated using Chave et al.’s generic model, with the most reliable specific equations extracted from the literature and online databases. Overall, we found 45 specific models applicable to 55.4% of the species present. In 30% of the species examined, there was a difference in AGB between the different methods used. Using specific equations at the community level, the estimate for AGB increased by 9.1% (<i>x</i> = 166.6 Mg ha<sup>−1</sup> ± 27.5 SD) compared to the generic model alone (<i>p</i>
DOI: 10.6084/m9.figshare.12010992
title: A public data set for "Proliferating activity in a bryozoan lophophore"

description: The data set comprises original TEM, SEM and CLSM images as well as two schematic drawings. The beginning of each file name corresponds to figure number in the article. The file name also provides a short description of the figure.
DOI: 10.6084/m9.figshare.12010989
title: Dataset 2: Read count tables

description: The read count table was first processed by dividing all counts with two, since mapping was performed as proper pairs (mapping of a forward and reverse read), this is referred to as the raw count table (see item A). The raw count table was normalized according to genome size for each microorganism, followed by total sum scaling. The resulting table is referred to as the count table (see item B and C). The microorganisms listed in the tables were aggregated to genus level. For the antimicrobial resistome analysis, raw read counts are provided for all genes divided by two (see item D) and normalized according to the total bacterial reads per sample (mapping to the databases: bacteria, bacteria_draft and HumanMicrobiome) as fragments per kilo base reference per million bacterial fragments (FPKM) (see item E). The FPKM table was also aggregated to resistance against antimicrobial classes (see item F), and the class-level information for each AMR-genes are available as see item G.
DOI: 10.6084/m9.figshare.12010983
title: Dataset 1: Results from DESeq analysis

description: The read count table was first processed by dividing all counts with two, since mapping was performed as proper pairs (mapping of a forward and reverse read), this is referred to as the raw count table (see item A). The raw count table was normalized according to genome size for each microorganism, followed by total sum scaling. The resulting table is referred to as the count table (see item B and C). The microorganisms listed in the tables were aggregated to genus level. For the antimicrobial resistome analysis, raw read counts are provided for all genes divided by two (see item D) and normalized according to the total bacterial reads per sample (mapping to the databases: bacteria, bacteria_draft and HumanMicrobiome) as fragments per kilo base reference per million bacterial fragments (FPKM) (see item E). The FPKM table was also aggregated to resistance against antimicrobial classes (see item F), and the class-level information for each AMR-genes are available as item G.
DOI: 10.6084/m9.figshare.12010989.v1
title: Dataset 2: Read count tables

description: The read count table was first processed by dividing all counts with two, since mapping was performed as proper pairs (mapping of a forward and reverse read), this is referred to as the raw count table (see item A). The raw count table was normalized according to genome size for each microorganism, followed by total sum scaling. The resulting table is referred to as the count table (see item B and C). The microorganisms listed in the tables were aggregated to genus level. For the antimicrobial resistome analysis, raw read counts are provided for all genes divided by two (see item D) and normalized according to the total bacterial reads per sample (mapping to the databases: bacteria, bacteria_draft and HumanMicrobiome) as fragments per kilo base reference per million bacterial fragments (FPKM) (see item E). The FPKM table was also aggregated to resistance against antimicrobial classes (see item F), and the class-level information for each AMR-genes are available as see item G.
DOI: 10.6084/m9.figshare.12010992.v1
title: A public data set for "Proliferating activity in a bryozoan lophophore"

description: The data set comprises original TEM, SEM and CLSM images as well as two schematic drawings. The beginning of each file name corresponds to figure number in the article. The file name also provides a short description of the figure.