cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2009124.v1
title: AZ1.0 Scripts and Code

description: Background: The Azadirachta indica (neem) tree is a source of a wide number of natural products, including the potent biopesticide azadirachtin. In spite of its widespread applications in agriculture and medicine, the molecular aspects of the biosynthesis of neem terpenoids remain largely unexplored. The current report describes the draft genome and four transcriptomes of A. indica and attempts to contextualise the sequence information in terms of its molecular phylogeny, transcript expression and terpenoid biosynthesis pathways. A. indica is the first member of the family Meliaceae to be sequenced using next generation sequencing approach. Results: The genome and transcriptomes of A. indica were sequenced using multiple sequencing platforms and libraries. The A. indica genome is AT-rich, bears few repetitive DNA elements and comprises about 20,000 genes. The molecular phylogenetic analyses grouped A. indica together with Citrus sinensis from the Rutaceae family validating its conventional taxonomic classification. Comparative transcript expression analysis showed either exclusive or enhanced expression of known genes involved in neem terpenoid biosynthesis pathways compared to other sequenced angiosperms. Genome and transcriptome analyses in A. indica led to the identification of repeat elements, nucleotide composition and expression profiles of genes in various organs. Conclusions: This study on A. indica genome and transcriptomes will provide a model for characterization of metabolic pathways involved in synthesis of bioactive compounds, comparative evolutionary studies among various Meliaceae family members and help annotate their genomes. A better understanding of molecular pathways involved in the azadirachtin synthesis in A. indica will pave ways for bulk production of environment friendly biopesticides
DOI: 10.6084/m9.figshare.7127537.v4
title: 13 CDS and 2 rRNA alignment file

description: The alignment file of 13 CDS and 2 rRNA.
DOI: 10.6084/m9.figshare.748829.v1
title: Educational Perceptions

description: this is for all education students
DOI: 10.6084/m9.figshare.7709990.v1
title: Catford et al. 2019 Ecol Lett_E93 modelled data.xlsx

description: Data from: Catford, J.A, Smith, A.L., Wragg, P.D., Clark, A.T., Kosmala, M., Cavender-Bares, J., Reich, P.B. & Tilman, D. (2019) Traits linked with species invasiveness and community invasibility vary with time, stage and indicator of invasion in a long-term grassland experiment. Ecology Letters.
DOI: 10.3535/0kp-yy7-6pv
title: Angochitina aff. echinata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/j42-81f-pcr
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3566367.v1
title: Appendix B. Regression equations used for calculating specific leaf area (SLA) from sample height.

description: Regression equations used for calculating specific leaf area (SLA) from sample height.
DOI: 10.3535/22g-whq-jf0
title: †Amussiopecten burdigalensis (Lamarck, 1806)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/djx-s0p-rwp
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19709128.v1
title: Monocarboxylate transporter 1 deficiency impacts CD8+ T lymphocytes proliferation and recruitment to adipose tissue during obesity

description: The raw mass spectrometry files were processed, searched and label free quantified (LFQ) using Proteome DiscovererTM software (version 2.2, Thermo Fisher Scientific, Waltam, MA, USA). Proteins and peptides were identified using the UniProt mouse database (uniprot-mouse.fasta).
DOI: 10.6084/m9.figshare.24155082.v1
title: Supplementary file 1 A-F.xlsx

description: Supplementary information in tabular format
DOI: 10.3535/lhr-z72-90l
title: †Spirifer Sowerby, 1818

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/pv8-29k-a8m
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13040474.v3
title: Code Review Histories of Gerrit (QT, Eclipse, Wireshark, LibreOffice) and GitHub (GitHub Desktop, VSCode, TensorFlow, Django) Projects

description: <i><b>Code Review Histories of Gerrit (QT, Eclipse, Wireshark, LibreOffice) and GitHub (GitHub Desktop, VSCode, TensorFlow, Django) Projects.</b></i><i><b><br></b></i><i><b>The data is fetched by using the tool: Perceval (https://github.com/chaoss/grimoirelab-perceval).<br></b></i><b><br></b>
DOI: 10.6084/m9.figshare.17113571.v1
title: LSCO pXRD data

description: CIFs for the final selected refinements and the associated raw (.xy) data for LSCO, along with the relevant instrument standard files.
DOI: 10.6084/m9.figshare.5588842.v1
title: Citations with contexts in Wikipedia

description: This dataset represents <b>structured metadata and contextual information about references added to Wikipedia articles</b> in a JSON format. <br>Each record represents an individual Wikipedia article revision with all the tags parsed, as stored in Wikipedia's XML dumps, including information about: <br>1) the context(s) in which the reference occurs within the article – such as the surrounding text, parent section title, and section level – <br>2) structured data and bibliographic metadata included within the reference itself (such as: any citation template used, external links, any known persistent identifiers) <br>3) additional data/metadata about the reference itself (the reference name, its raw content, and if applicable, revision ID associated with reference addition/deletion/change)<br>The data is available as a set of compressed JSON files, extracted from the July 1, 2017 XML dump of English Wikipedia. Other languages may be added to this dataset in the future.<br>The JSON schema and Python parsing libraries used to generate the data are in the references.
DOI: 10.3535/5vh-gp2-b4p
title: Serpentine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/s6m-qfn-lg8
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.20065745.v1
title: Alcohol consumption and smoking in relation to psoriasis: a Mendelian randomization study

description: Supplementary Tables and Figures
DOI: 10.3535/3lz-911-3p9
title: Meionite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/gtt-hy6-z81
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28386431.v1
title: Supplementary data files

description: We measured N<sub>2</sub> fixation along the Western Antarctic Peninsula (WAP) and at Palmer Station over two austral summer months. N<sub>2</sub> fixation rates measured by <sup>15</sup>N<sub>2</sub> assays were below conservative detection limits, despite being detected when using less stringent detection thresholds, suggesting a potential for N<sub>2</sub> fixation. This was confirmed by our continuous acetylene reduction method (FARACAS). <i>nifH </i>gene amplicon sequencing revealed that Gammaproteobacteria were the dominant class of identified diazotrophs in the WAP’s coastal waters. However, Epsilonproteobacteria contributed disproportionally to <i>nifH</i> expression, particularly when putative N<sub>2</sub> fixation rates were at the highest. Combining diazotroph communities with environmental observations, we hypothesize that vertical water mixing resuspended sediments into the water column and contributed to the limited N<sub>2</sub> fixation in Antarctic waters.
DOI: 10.3535/70r-9kw-2ja
title: †Philhedra Koken, 1889

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ngc-pkc-r3v
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.16691356.v1
title: nECS OA_Figshare.xlsx

description: Measurements were taken during four seasonal cruises of the R/V <i>Onnuri</i> in spring (May 15–21) 2017, summer (August 16–23) 2016, autumn (November 6–15) 2015, and winter (February 8–14) 2017. Depth profiles of temperature and salinity were measured using a calibrated conductivity–temperature–depth/pressure (CTD) recorder (SBE 911; Sea-Bird Electronics Inc., Bellevue, WA, USA). Seawater samples were collected using a rosette sampler with 10 L Niskin bottles mounted onto the CTD assembly at eight depths (0, 10, 20, 30, 50, 75, 100, and 150 m) for each station in both transects F (33 °N) and H (32 °N). We could not conduct winter survey in H transect. Dissolved Inorganic Carbon (DIC), total alkalinity (TA), and nutrients (phosphate and silicate) were analyzed under laboratory conditions. Bottom seawater samples were collected 5 m above the bottom at stations where the depth was less than 100 m.The DIC was measured by acid extraction with infrared CO<sub>2</sub> detection (AS-C3, Apollo SciTech Inc., USA), and the TA was determined by open-cell Gran acidimetric titration (AS-ALK2, Apollo SciTech Inc., USA). The uncertainties of measurements were evaluated daily using certified reference materials for seawater provided by the Scripps Institution of Oceanography (San Diego, USA). The DIC and TA measurements had precisions of approximately ±1.5 and ±2 μmol kg<sup>–</sup><sup>1</sup>, respectively. The seawater CaCO<sub>3</sub> saturation state for aragonite (Ωarag) was calculated with CO2SYS program version 2.1 using salinity, temperature, depth, phosphate, silicate, TA, and DIC data. The carbonic acid dissociation constants of Mehrbach et al. (1973), as refit by Dickson and Millero (1987), were used to determine Ωarag. The uncertainty in the estimation of Ωarag was approximately ±0.02.<br>
DOI: 10.6084/m9.figshare.21679319.v2
title: Inform Concent of genetic patient

description: <strong>CONSENT LETTER TO FOLLOW ACTIVITIES</strong> <strong>GENETIC MAPPING RESEARCH</strong>
DOI: 10.6084/m9.figshare.c.3905827_d1.v1
title: MOESM1 of Gardening in the desert: a spatial optimization approach to locating gardens in rapidly expanding urban environments

description: Additional file 1. Past and Present Phoenix Garden Locations. Point shapefile of the garden data used in this analysis.
DOI: 10.3535/3rk-3wd-0ex
title: Rugoos

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/5yp-6xb-tr5
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/22l-k35-l0l
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/ehz-vlz-g3a
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19314170.v1
title: TravisTorrent

description: The TraivsTorrent treasure trove data sets from the publication<br>Beller, Moritz, Georgios Gousios, and Andy Zaidman. "Travistorrent: Synthesizing travis ci and github for full-stack research on continuous integration." <i>2017 IEEE/ACM 14th International Conference on Mining Software Repositories (MSR)</i>. IEEE, 2017.
DOI: 10.6084/m9.figshare.24635295.v1
title: Best-ranked Covariate models (M2)

description: Cmdstanr generated output files (containing posterior samples).
DOI: 10.6084/m9.figshare.26725742.v1
title: Additional file 1 of Laser hemorrhoidoplasty vs. rubber band ligation: a randomized trial comparing 2 mini-invasive treatment for grade II hemorrhoids

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.4246745.v1
title: Objectives and design of BLEEDS: a cohort study to identify new risk factors and predictors for major bleeding during treatment with vitamin K antagonists

description: Data used in the article 'Objectives and design of BLEEDS: a cohort study to identify new risk factors and predictors for major bleeding during treatment with vitamin K antagonists' published in Plos One
DOI: 10.3535/6zf-5f4-ach
title: †Goniocardium rachitis (Deshayes, 1829)

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/jew-yr2-86r
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27088303.v1
title: Labour force participation rate by sex and age for the year 2023

description: Global, percentual labour force participation rate by sex and age for the year 2023<br>Based under an International Labour Organization (ILO) publication, licensed under a Creative Commons Attribution BY 4.0 licence (CC BY 4.0), available under https://rshiny.ilo.org/dataexplorer51/?lang=en&id=EAP_DWAP_SEX_AGE_RT_A
DOI: 10.6084/m9.figshare.3551811.v1
title: Supplement 1. R code to fit the log-binomial model and to perform the jackknife and bootstraps.

description: File List DistanceDecay.R Description The R code required to reproduce the analysis presented in the application. The code includes functions to perform the bootstrap and jackknife.
DOI: 10.6084/m9.figshare.3566628.v1
title: Appendix B. Required and optimal attributes for classification and occurrence plot records.

description: Required and optimal attributes for classification and occurrence plot records.
DOI: 10.3535/73k-3jc-262
title: †Siphonotreta Verneuil, 1845

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/nag-f26-d6z
title: Sphaerochitina lycoperdoides

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24978204.v1
title: Nucleotide and amino acid sequences of the 188 predicted effectors in <i>Ceratocystis fimbriata</i>

description: In this study, we scanned the recent near chromosomal level assembly for putative secreted effectors in the sweetpotato <i>C. fimbriata</i> isolate AS236 using a custom fungal effector annotation pipeline. We identified a set of 188 putative effectors on the basis of secretion signal and <i>in silico</i> prediction in EffectorP.
DOI: 10.6084/m9.figshare.3514610.v1
title: Supplement 1. R source code for the Brownian bridge movement model (BBMM) that estimates a utilization distribution (UD) for a migration route of a GPS-collared mule deer, as depicted in Fig. 2.

description: File List BBMM_supplement.R – R source code gps53_spring06.txt – Input file for R code readme.txt – Description of R source code Description The BBMM_supplement.R R program uses the Brownian bridge movement model (BBMM) to estimate a 99% utilization distribution of a mule deer migration route. The gps53_spring06.txt input file contains a sequence of migratory GPS locations collected from Deer#53 during the 2006 spring migration. Additional information is provided in the readme.txt file and the BBMM_supplement.R. R code is commented for further documentation. Equations for the BBMM and the Brownian motion variance are provided in Horne et al. (2007)<sup>a</sup>. <sup>a</sup> Horne, J. S., E. O. Garton, S. M. Krone, and J. S. Lewis. 2007. Analyzing animal movements using Brownian Bridges. Ecology 88:2354–2363.
DOI: 10.17632/5w692r24rj
title: 10.3389/fonc.2024.1388154

description: Raw data of "LINC00958 as new diagnostic and prognostic biomarker of childhood acute lymphoblastic leukaemia of B cells" doi 10.3389/fonc.2024.1388154
DOI: 10.17632/c568r2k2wp
title: Data for: Sugar Particles and Their Role in Crystallization Kinetics and Structural Properties in Fats Used for Nougat Creme Production

description: All raw data from HPLC, DSC and Rheometry which was exported and processed in Excel files.
DOI: 10.3535/4p9-5fz-02q
title: Ramochitina uncinata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/syk-s0c-k6q
title: †Ceramopora Hall, 1851

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.19448632.v1
title: Train timetabling and destination selection in mining freight rail networks: A hybrid simulation methodology incorporating heuristics

description: We present a hybrid simulation methodology designed to support freight rail operations in the mining industry. We aim to bridge the gap between hybrid simulation modelling research and practice. Through discussion of a case study, we contribute to the hybrid simulation methodological literature, explaining why at a conceptual level the hybrid model design and adopted modelling frame are well suited to the problem at hand. The methodology we present can be used in mining freight rail operations planning to determine train destinations across a network and generate a feasible timetable that satisfies operational needs. The method combines discrete-event simulation and agent-based modelling with heuristics to govern train movements destination selection, incorporating an ensemble of simulation runs. We demonstrate the capability of our method to produce a train timetable that satisfies the requirements of the mining operation. Choosing optimal destinations from many options for a large fleet of trains in a vast network is a significant computational challenge (NP-hard in the general case). The method presented significantly reduces the parameter space for which full enumeration of all options would not be computationally tractable.
DOI: 10.6084/m9.figshare.26489929.v2
title: Mohloding et al. suppementary material

description: This study investigates the social accpetance of solar water heaters in South Africa using the expectancy disconfirmation model.
DOI: 10.6084/m9.figshare.5311045.v2
title: Distance genetic matrix (above diagonal) and population pairwise FST of 7 tested regions comparison by 4 microsatellites loci (below diagonal).

description: Genetic distance and pair-wise FST values between regions are shown in Table 5. The minimum genetic distance was found between the Moghan-Zarghan pair (0.116) and the maximum between the Esfahan-Sabzvar pair (0.722). Computed FST values ranged from 0.102 for the Kalposh-Miandoab to 0.349 for the Moghan-Esfahan. FST values were significant for all paired combinations (P &lt; 0.05).<br>
DOI: 10.3535/8h9-b4k-1a0
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/y1p-49x-zmy
title: Linochitina odiosa

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28676228.v1
title: 炎症因子在肠道菌群与子宫内膜癌关系中的中介作用： 一项孟德尔随机化研究无标题项目

description: This dataset includes the results from a Mendelian randomization study investigating the mediating role of inflammatory factors in the relationship between gut microbiota and endometrial cancer. The study leverages genetic instruments to assess causal relationships between these factors, providing insights into how gut microbiota influences endometrial cancer through inflammation.<b>GWAS Summary Data</b>: Data used for the genetic analysis of gut microbiota and inflammatory factors.<b>R Script</b>: The R code used for performing statistical analyses and generating results.<b>Processed Results</b>: Data files containing the final analysis results.
DOI: 10.3535/dk6-zzl-7bm
title: Lava

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/thq-y1p-apz
title: Minerals

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bq9-k5c-3gs
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/p25-3j2-njm
title: †Bothriocidaris Eichwald, 1860

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24077571.v1
title: Table S3. MRM transitions list

description: This file details the MRM transitions of the predicted FAHFAs in positive ion mode, which comprises a total of 1058 events. Each FAHFA event includes the m/z values of the precursor ion and product ion, ionization mode, collision energy and associated information on the predicted FAHFA structure.
DOI: 10.6084/m9.figshare.27959997.v1
title: A First Look at the Lifecycle of DL-Specific Self-Admitted Technical Debt - Replication Package

description: Replication Package of the study " A First Look at the Lifecycle of DL-Specific Self-Admitted Technical Debt"
DOI: 10.6084/m9.figshare.c.3811798_d8.v1
title: Additional file 17: Table S17. of Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

description: Expression level of the target genesÂ for the differentially-expressed novel miRNAs identified. (XLSX 45 kb)
DOI: 10.3535/0hc-xhe-8ng
title: Specimen from Tallinn University of Technology

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bzt-sdn-5zl
title: †Sowerbyella Jones, 1928

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/c2e-n1v-dle
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/etq-f21-mj7
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.13177163.v2
title: Files for Building the Rust Expression Browser

description: This entry consists of a compressed tar archive containing all the file used to build the initial rust expression browser (www.rust-expression.com).<br>Initial code to provision the software for the browser is available at:https://github.com/JIC-CSB/expvip-ansible<br><br>Code to build the browser using the metadata in this entry is available at:https://github.com/SaundersLab/Rust_Expression_Browser<br>
DOI: 10.6084/m9.figshare.14010311.v1
title: TD-BA DC-FSSH Dynamics

description: This dataset contains 500 trajectories of ethylene computed with TD-BA couplings.