cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13649069
title: Single-cell RNA-seq identification of the cellular molecular characteristics of sporadic bilateral clear cell renal cell carcinoma

description: Bilateral renal cell carcinoma (RCC) is a rare type of this disease and includes familial bilateral and sporadic bilateral RCCs. Studying the cellular molecular characteristics of sporadic bilateral is important to provide a direct guide for clinical treatment. These cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell RNA level. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. This work presented the complex cellular environment of bilateral ccRCC by scRNA-seq. Single-cell transcriptome analysis revealed high similarity in gene expression among most cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC.
DOI: 10.6084/m9.figshare.13649069.v1
title: Single-cell RNA-seq identification of the cellular molecular characteristics of sporadic bilateral clear cell renal cell carcinoma

description: Bilateral renal cell carcinoma (RCC) is a rare type of this disease and includes familial bilateral and sporadic bilateral RCCs. Studying the cellular molecular characteristics of sporadic bilateral is important to provide a direct guide for clinical treatment. These cellular molecular characteristics can be expressed at the RNA level, especially at the single-cell RNA level. Single-cell RNA sequencing (scRNA-seq) was performed on bilateral clear cell RCC (ccRCC). A total of 3,575 and 3,568 high-quality single-cell transcriptome data were captured from the left and right tumour tissues, respectively. Gene characteristics were identified by comparing left and right tumours at the scRNA level. This work presented the complex cellular environment of bilateral ccRCC by scRNA-seq. Single-cell transcriptome analysis revealed high similarity in gene expression among most cell types of bilateral RCCs but significant differences in gene expression among different site tumour cells. Additionally, the potential biological function of different tumour cell types was determined by gene ontology (GO) analysis. The transcriptome characteristics of tumour tissues in different locations at the single-cell transcriptome level were revealed through the scRNA-seq of bilateral sporadic ccRCC. This work provides new insights into the diagnosis and treatment of bilateral RCC.
DOI: 10.6084/m9.figshare.13059097
title: Additional file 1 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 1: Supplementary Data File 1. Sample and read depth.
DOI: 10.6084/m9.figshare.13059100
title: Additional file 2 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 2: Supplementary Data File 2. Differentially expressed genes at each age.
DOI: 10.6084/m9.figshare.13059097.v1
title: Additional file 1 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 1: Supplementary Data File 1. Sample and read depth.
DOI: 10.6084/m9.figshare.13059100.v2
title: Additional file 2 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 2: Supplementary Data File 2. Differentially expressed genes at each age.
DOI: 10.6084/m9.figshare.13059103
title: Additional file 3 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 3: Supplementary Data File 3. The full lists of genes in each cluster.
DOI: 10.6084/m9.figshare.13059103.v1
title: Additional file 3 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 3: Supplementary Data File 3. The full lists of genes in each cluster.
DOI: 10.6084/m9.figshare.13059106.v1
title: Additional file 4 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 4: Supplementary Data File 4. Gene ontology/pathway analyses.
DOI: 10.6084/m9.figshare.13059109
title: Additional file 5 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 5: Supplementary Data File 5. Very few differentially expressed genes shared across other Chd8 mouse models, even when comparing similar ages.
DOI: 10.6084/m9.figshare.13059100.v1
title: Additional file 2 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 2. Supplementary Data File 2: Differentially expressed genes at each age
DOI: 10.6084/m9.figshare.13059109.v2
title: Additional file 5 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 5: Supplementary Data File 5. Very few differentially expressed genes shared across other Chd8 mouse models, even when comparing similar ages.
DOI: 10.6084/m9.figshare.13059109.v1
title: Additional file 5 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 5. Supplementary Data File 5: Very few differentially expressed genes shared across other Chd8 mouse models, even when comparing similar ages
DOI: 10.6084/m9.figshare.13059106
title: Additional file 4 of Chd8 haploinsufficiency impairs early brain development and protein homeostasis later in life

description: Additional file 4: Supplementary Data File 4. Gene ontology/pathway analyses.
DOI: 10.18141/1780937
title: Data supporting the article titled "Heterogeneous Multiphase Flow Properties of Volcanic Rocks and Implications for Noble Gas Transport from Underground Nuclear Explosions"

description: The submission is a Reproducible Research (RR) data archive that contains the supporting multiphase fluid flow and curve fitting results of the Vadose Zone Journal article titled: "Heterogeneous Multiphase Flow Properties of Volcanic Rocks and Implications for Noble Gas Transport from Underground Nuclear Explosions." The article's DOI number is the following: https://doi.org/10.1002/vzj2.20123. Please see the "Methods and Materials" section of the journal article and the ReadMe.txt in the RR_ARCHIVE folder for further details. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. SAND Number: SAND2021-3407 O.
DOI: 10.6084/m9.figshare.14544799
title: Additional file 1 of Evaluation of zoonotic platyhelminthe infections identified in slaughtered livestock in Iran, 2015–2019

description: Additional file 1.
DOI: 10.6084/m9.figshare.14544799.v1
title: Additional file 1 of Evaluation of zoonotic platyhelminthe infections identified in slaughtered livestock in Iran, 2015–2019

description: Additional file 1.
DOI: 10.6084/m9.figshare.14544814
title: Additional file 6 of Evaluation of zoonotic platyhelminthe infections identified in slaughtered livestock in Iran, 2015–2019

description: Additional file 6. (XLS 148 kb)
DOI: 10.6084/m9.figshare.14544814.v1
title: Additional file 6 of Evaluation of zoonotic platyhelminthe infections identified in slaughtered livestock in Iran, 2015–2019

description: Additional file 6. (XLS 148 kb)
DOI: 10.6084/m9.figshare.14544498.v1
title: VIC-SWE and Guan-AR-catalog

description: Both data are in netcdf format. VIC SWE data is separated into two files: calendar years 1950-1982 and 1983-2015 due the file size limit.<br>
DOI: 10.6084/m9.figshare.14544498
title: VIC-SWE and Guan-AR-catalog

description: Both data are in netcdf format. VIC SWE data is separated into two files: calendar years 1950-1982 and 1983-2015 due the file size limit.<br>
DOI: 10.6084/m9.figshare.14544904.v1
title: Additional file 1 of Consultation-liaison psychiatry in Japan: a nationwide retrospective observational study

description: Additional file 1. Post hoc analysis of patient charactereistics by region.
DOI: 10.6084/m9.figshare.14544904
title: Additional file 1 of Consultation-liaison psychiatry in Japan: a nationwide retrospective observational study

description: Additional file 1. Post hoc analysis of patient charactereistics by region.
DOI: 10.6084/m9.figshare.14544934
title: Additional file 1 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 1: Table S1. Antibiotic resistance prediction according to genes/mutations.
DOI: 10.6084/m9.figshare.14544934.v1
title: Additional file 1 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 1: Table S1. Antibiotic resistance prediction according to genes/mutations.
DOI: 10.6084/m9.figshare.14544937.v1
title: Additional file 2 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 2: Table S2. Main characteristics of the 912 strains from collections 2005 and 2016-7.
DOI: 10.6084/m9.figshare.14544943.v1
title: Additional file 4 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 4: Table S3. Phylogroup distribution among 2005 and 2016-7 collections, overall and according to urinary and digestive portal of entry.
DOI: 10.6084/m9.figshare.14544943
title: Additional file 4 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 4: Table S3. Phylogroup distribution among 2005 and 2016-7 collections, overall and according to urinary and digestive portal of entry.
DOI: 10.6084/m9.figshare.14544946
title: Additional file 5 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 5: Table S4. Main characteristics of the studied pathogenicity islands.
DOI: 10.6084/m9.figshare.14544946.v1
title: Additional file 5 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 5: Table S4. Main characteristics of the studied pathogenicity islands.
DOI: 10.6084/m9.figshare.14544937
title: Additional file 2 of Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period

description: Additional file 2: Table S2. Main characteristics of the 912 strains from collections 2005 and 2016-7.
DOI: 10.6084/m9.figshare.14544952
title: Additional file 3 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 2.
DOI: 10.6084/m9.figshare.14544952.v1
title: Additional file 3 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 2.
DOI: 10.6084/m9.figshare.14544958
title: Additional file 4 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 3.
DOI: 10.6084/m9.figshare.14544958.v1
title: Additional file 4 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 3.
DOI: 10.6084/m9.figshare.14544961
title: Additional file 5 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 4.
DOI: 10.6084/m9.figshare.14544961.v1
title: Additional file 5 of Diet, obesity, and the gut microbiome as determinants modulating metabolic outcomes in a non-human primate model

description: Additional file 4.
DOI: 10.6084/m9.figshare.14544979
title: Additional file 1 of One-year intradialytic leg exercises with resistance bands and fat mass increase in elderly hemodialysis patients: a retrospective study

description: Additional file 1. Subanalysis of 21 and 15 patients.
DOI: 10.6084/m9.figshare.14544979.v1
title: Additional file 1 of One-year intradialytic leg exercises with resistance bands and fat mass increase in elderly hemodialysis patients: a retrospective study

description: Additional file 1. Subanalysis of 21 and 15 patients.
DOI: 10.6084/m9.figshare.14544996
title: Additional file 2 of VNTR polymorphism in the breakpoint region of ABL1 and susceptibility to bladder cancer

description: Additional file 2: Supplementary Table S1. Homology comparison of repeat sequences in the ABL1-MS1 region.
DOI: 10.6084/m9.figshare.14544996.v1
title: Additional file 2 of VNTR polymorphism in the breakpoint region of ABL1 and susceptibility to bladder cancer

description: Additional file 2: Supplementary Table S1. Homology comparison of repeat sequences in the ABL1-MS1 region.
DOI: 10.6084/m9.figshare.14544999
title: Additional file 1 of Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens

description: Additional file 1: Table S1. Allelic states at 15 novel microsatellite markers for 2862 unique multilocus genotypes of the black soldier fly, Hermetia illucens, from 150 wild and captive populations sampled from 57 countries on seven subcontinents.
DOI: 10.6084/m9.figshare.14545056
title: Additional file 5 of Predictive value of RAD51 on the survival and drug responsiveness of ovarian cancer

description: Additional file 5: Table S1. Genes correlated with RAD51 in UALCAN.
DOI: 10.6084/m9.figshare.14545056.v1
title: Additional file 5 of Predictive value of RAD51 on the survival and drug responsiveness of ovarian cancer

description: Additional file 5: Table S1. Genes correlated with RAD51 in UALCAN.
DOI: 10.6084/m9.figshare.14545065
title: Additional file 8 of Predictive value of RAD51 on the survival and drug responsiveness of ovarian cancer

description: Additional file 8: Table S4. Genes interacted with RAD51 in NCBI.
DOI: 10.6084/m9.figshare.14545065.v1
title: Additional file 8 of Predictive value of RAD51 on the survival and drug responsiveness of ovarian cancer

description: Additional file 8: Table S4. Genes interacted with RAD51 in NCBI.
DOI: 10.6084/m9.figshare.14545087
title: Additional file 6 of Factors influencing the implementation of mental health recovery into services: a systematic mixed studies review

description: Additional file 6. Mixed Methods Appraisal Tool Results.
DOI: 10.6084/m9.figshare.14545087.v1
title: Additional file 6 of Factors influencing the implementation of mental health recovery into services: a systematic mixed studies review

description: Additional file 6. Mixed Methods Appraisal Tool Results.
DOI: 10.6084/m9.figshare.14545099.v1
title: Additional file 2 of geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

description: Additional file 2: Table S1. In order to run geneshot, the user starts with the command “nextflow run Golob-Minot/geneshot” and appends any of the flags.
DOI: 10.6084/m9.figshare.14545099
title: Additional file 2 of geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

description: Additional file 2: Table S1. In order to run geneshot, the user starts with the command “nextflow run Golob-Minot/geneshot” and appends any of the flags.
DOI: 10.6084/m9.figshare.14545102.v1
title: Additional file 3 of geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

description: Additional file 3: Table S2. The images used by the current version of geneshot.
DOI: 10.6084/m9.figshare.14545102
title: Additional file 3 of geneshot: gene-level metagenomics identifies genome islands associated with immunotherapy response

description: Additional file 3: Table S2. The images used by the current version of geneshot.
DOI: 10.6084/m9.figshare.14545168
title: Additional file 2 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 2: Dataset S1. StringTie transcript gtf annotation.
DOI: 10.6084/m9.figshare.14545168.v1
title: Additional file 2 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 2: Dataset S1. StringTie transcript gtf annotation.
DOI: 10.6084/m9.figshare.14545171
title: Additional file 3 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 3: Dataset S2. StringTie assembled transcripts.
DOI: 10.6084/m9.figshare.14545171.v1
title: Additional file 3 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 3: Dataset S2. StringTie assembled transcripts.
DOI: 10.6084/m9.figshare.14545165
title: Additional file 1 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 1: Table S1. The expression, annotation and coordinates of G. boninense transcripts. Normalized expression values, log2 fold-change and p-adj values for 15,536 transcript loci are listed in this table. Protein domain names and descriptions obtained from two databases, CDD and Pfam, and results from three pipelines, ENTAP, secreted protein and eCAMI (CAZymes) are presented for the 1560 differentially expressed genes. Value ‘YES’ in ENTAP column means that the annotation was manually curated (last column). The values with an asterisk in the CAZyme column were results obtained from other annotation sources. CDD and Pfam domain names, and results from CAZyme and secretion signal detection pipeline are included for the remaining transcript loci.
DOI: 10.6084/m9.figshare.14545174
title: Additional file 4 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 4: Dataset S3. TransDecoder derived proteins.
DOI: 10.6084/m9.figshare.14545165.v1
title: Additional file 1 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 1: Table S1. The expression, annotation and coordinates of G. boninense transcripts. Normalized expression values, log2 fold-change and p-adj values for 15,536 transcript loci are listed in this table. Protein domain names and descriptions obtained from two databases, CDD and Pfam, and results from three pipelines, ENTAP, secreted protein and eCAMI (CAZymes) are presented for the 1560 differentially expressed genes. Value ‘YES’ in ENTAP column means that the annotation was manually curated (last column). The values with an asterisk in the CAZyme column were results obtained from other annotation sources. CDD and Pfam domain names, and results from CAZyme and secretion signal detection pipeline are included for the remaining transcript loci.
DOI: 10.6084/m9.figshare.14545174.v1
title: Additional file 4 of Transcriptional profile of oil palm pathogen, Ganoderma boninense, reveals activation of lignin degradation machinery and possible evasion of host immune response

description: Additional file 4: Dataset S3. TransDecoder derived proteins.
DOI: 10.5281/zenodo.4739755
title: Dr.

description: <strong>Data: Bulk exchange coefficients of air-sea fluxes and sea spray contribution during a tropical storm: Direct tower-based measurement and Analysis</strong>
DOI: 10.5281/zenodo.4739754
title: Dr.

description: <strong>Data: Bulk exchange coefficients of air-sea fluxes and sea spray contribution during a tropical storm: Direct tower-based measurement and Analysis</strong>
DOI: 10.6084/m9.figshare.14544633.v1
title: All 383585 Unigenes of Bambusa oldhamii Munro culm skin transcriptome

description: All the 383585 Unigenes of Bambusa oldhamii Munro culm skins using RNA-seq technology with Trinity. <br>
DOI: 10.6084/m9.figshare.14544633
title: All 383585 Unigenes of Bambusa oldhamii Munro culm skin transcriptome

description: All the 383585 Unigenes of Bambusa oldhamii Munro culm skins using RNA-seq technology with Trinity. <br>
DOI: 10.6084/m9.figshare.14545536
title: Supplementary Material for: Progression in Physical Frailty in Peritoneal Dialysis Patients

description: <b><i>Background:</i></b> Physical frailty contributes to adverse clinical outcomes in peritoneal dialysis (PD) patients. Little has been reported about frailty transitions in this population. We aimed to describe the transitions of frailty in PD patients and identify factors that predicted changes in frailty state. <b><i>Methods:</i></b> In a prospective observational study, we recruited 267 PD patients. Frailty was assessed by a validated frailty score. Depression was graded by PHQ-9 score, and nutritional status was evaluated by serum albumin, Subjective Global Assessment (SGA), and comprehensive Malnutrition Inflammation Score (MIS). The primary outcome was the change in frailty score at follow-up compared to baseline. <b><i>Results:</i></b> At baseline, 194 (72.7%) patients were classified as frail. With time, their frailty scores significantly increased (<i>p</i> &lt; 0.001), and 93 of the surviving subjects (78.2%) were classified as frail. There was a modest significant correlation between change in MIS (<i>p</i> &lt; 0.001), change in SGA score (<i>p</i> &lt; 0.001), and change in PHQ-9 score (<i>p</i> &lt; 0.001) with change in frailty score. An increase in PHQ-9 score (<i>p</i> &lt; 0.001) and MIS (<i>p</i> = 0.001), as well as longer duration of hospitalization (<i>p</i> = 0.001), was independently associated with a greater change in frailty score after adjustment for confounding factors. Frailty score was also improved in patients who were converted to hemodialysis (<i>p</i> = 0.048) and received renal transplantation (<i>p</i> = 0.005). <b><i>Conclusion:</i></b> Our findings suggested that frailty transitions were common in PD patients. Worsening in nutrition and depression, together with a longer duration of hospitalization, were associated with worsening in frailty.