cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qbzkh18gr
title: Diversity patterns and community structure of the macrofauna along the beach-inland transition zone of small tropical islands: supporting raw data and code

description: Biodiversity follows distinct and observable patterns. Where to systems
 meet, biodiversity is often increased, due to overlapping occurrence
 ranges and the presence of specialized species that can tolerate the
 dynamic conditions of the transition zones. One of the most pronounced
 transition zones occurs at shores, where oceans and terrestrial habitat
 collide, forming the shore-inland transition zone. The relevance of this
 transition zone in shaping a system’s community structure is particularly
 pronounced on small islands due to their high shore-to-inland-area ratio.
 However, the community structure of insular faunas along this transition
 zone is unknown. Here, we investigated the diversity patterns along the
 beach-inland transition zone of small islands and tested the hypothesis
 that species diversity increases towards the transition zone where beach
 and interior habitat meet. By measuring environmental parameters, resource
 availability, and macrofauna diversity along transects running across the
 beach-inland transition zone, we show that a gradual change in species
 composition from beach to the inland exists, but neither taxa richness,
 Shannon diversity, nor overall abundance change significantly. These
 findings give important insight into insular community structure at the
 transition zone from sea to land that are relevant to better understand
 the dynamic and unique characteristics of insular ecosystems.
DOI: 10.5061/dryad.cz8w9gj3b
title: The Caucasian dwarf goby, a new alien Gobiidae spreading at the Lower Rhine, Germany

description: With the first catch of the Caucasian dwarf goby Knipowitschia cf.
 caucasica at the Lower Rhine, we now describe the distribution in this
 area, add first data on the population structure and feeding in the new
 habitat and draw attention to this new member of the fish community in
 western European countries.
DOI: 10.5281/zenodo.18357407
title: Volatile organic compounds data for manuscript: Microbial Communities, Volatile Flavor Profiles and Metabolomic Characteristics during Traditional Hakka Huangjiu Fermentation

description: This dataset is part of raw materials of manuscript: Microbial Communities, Volatile Flavor Profiles and Metabolomic Characteristics during Traditional Hakka Huangjiu Fermentation, contains GC-MS raw data. 

 

This dataset will be used in other manuscripts in the future.
DOI: 10.5281/zenodo.18357408
title: Volatile organic compounds data for manuscript: Microbial Communities, Volatile Flavor Profiles and Metabolomic Characteristics during Traditional Hakka Huangjiu Fermentation

description: This dataset is part of raw materials of manuscript: Microbial Communities, Volatile Flavor Profiles and Metabolomic Characteristics during Traditional Hakka Huangjiu Fermentation, contains GC-MS raw data. 

 

This dataset will be used in other manuscripts in the future.
DOI: 10.5061/dryad.2v6wwpzmr
title: CarniDIET 1.0: A database of terrestrial, carnivorous mammal diets

description: Motivation: A species’ diet is central to understanding many aspects of
 its biology, including its behaviour, movement, and ecological niche. The
 diets of terrestrial carnivorous mammals, defined here as species
 primarily consuming other mammals (hereafter, mammal-consumers), have been
 extensively studied and can vary in the proportion of different food
 types, and species, consumed across their geographic ranges. Accessibility
 to data capturing such variation in diets of mammal-consumers across the
 variety of ecosystems they occur in would provide valuable information for
 conservation, and open research avenues for macroevolution and
 macroecology. However, data on mammal-consumer diets across their
 geographic ranges have not been systematically collated. Here, we present
 CarniDIET (Version 1.0), an open-access database containing quantitative
 data on the diets of terrestrial mammal-consumers collated from the
 literature. Main types of variable contained: Diet records capturing the
 percentage of mammalian prey, to the highest taxonomic resolution
 available, and non-mammalian food types (e.g. birds, invertebrates) in the
 diets of mammal-consumers at specific sites and times. Associated data
 with each diet record includes, where available, age and sex of
 mammal-consumer, sample size, sample origin, and quantification method as
 well as spatial and temporal variables including dates, season, study
 site, altitude and coordinates. Spatial location and grain: Global,
 terrestrial. The spatial grain varies among sites from 0.03km2 to
 100000km2, with a median of 170km2. Study centroids are provided as
 latitude-longitude coordinates. Time period and grain: Original diet
 samples were collected between 1933 and 2017, with half of studies
 collected between 1994 and 2008. Studies summarise diets from one month to
 66 years, with a median of one year. Major taxa and level of measurement:
 Terrestrial carnivorous mammals that primarily consume other mammals (103
 species). Studies generally represent species’ population averages,
 although can include demographic breakdowns.
description: Data collated from (primarily) peer-reviewed papers describing
 the site-specific compositions of terrestrial, carnivorous mammals from
 around the world. In CarniDIET 1.0, carnivorous mammals were those that
 primarily consumed other mammals (in the paper described as
 'mammal-consumers'), as the methods used and ways of presenting
 data are fairly standardised among these species.
description: Please see the manuscript at Global Ecology and Biogeography for
 full methodology. The Github page will be used to host future
 updates: https://github.com/osmiddleton/CarniDIET-Database.
DOI: 10.5061/dryad.w3r2280qf
title: Data from: The role of ventromedial prefrontal cortex in reward valuation and future thinking during intertemporal choice

description: The paper investigates the effect of reward magnitude and episodic future
 thinking (EFT) cues on delay discounting (DD) in 12 patients with lesions
 to the ventromedial prefrontal cortex (vmPFC patients) and 41 healthy
 controls. In the Standard condition, participants viewed pairs of
 monetary amounts (of different magnitude) and were asked to
 make hypothetical choices
 between smaller-immediate rewards and larger rewards
 available after a delay. In the EFT condition, participants
 imagined personal events to occur at the delays associated with the
 larger-delayed rewards. We found that DD was steeper in vmPFC patients
 compared to controls, and not modulated by reward magnitude. However, EFT
 cues reduced DD in vmPFC patients as well as controls. 
 This dataset reports individual and group data on the subjective value of
 small and large rewards at the different task delays, the resulting area
 under the curve (AuC), and the number of inconsistent choices during
 DD.  A summary of the relevant variables and variable legenda is
 reported on the README file.   
description: The readme file contains an explanation of the structure of the
 excel file, and on  each of the variables in the dataset. Information on
 how the measurements were done can be found in the associated manuscript
 referenced above.
DOI: 10.15468/dl.6txnut
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dichrostachys cinerea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 39 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002829-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.b2rbnzsdv
title: Disease or drought: Environmental fluctuations release zebra from a potential pathogen-triggered ecological trap

description: When a transmission hotspot for an environmentally persistent pathogen
 establishes in otherwise high-quality habitat, the disease may exert a
 strong impact on a host population. However, fluctuating environmental
 conditions lead to heterogeneity in habitat quality and animal habitat
 preference, which may interrupt the overlap between selected and risky
 habitats. We evaluated spatiotemporal patterns in anthrax mortalities in a
 plains zebra (Equus quagga) population in Etosha National Park, Namibia,
 incorporating remote-sensing and host telemetry data. A higher proportion
 of anthrax mortalities of herbivores was detected in open habitats than in
 other habitat types. Resource selection functions showed that the zebra
 population shifted habitat selection in response to changes in rainfall
 and vegetation productivity. Average to high rainfall years supported
 larger anthrax outbreaks, with animals congregating in preferred open
 habitats, while a severe drought forced animals into otherwise less
 preferred habitats, leading to few anthrax mortalities. Thus, the timing
 of anthrax outbreaks was congruent with preference for open plains
 habitats and a corresponding increase in pathogen exposure. Given shifts
 in habitat preference, the overlap in high-quality habitat and high-risk
 habitat is intermittent, reducing the adverse consequences for the
 population.
description: These files include: 1.R code for analyses and
 figure generation for the study. 2.Annual rainfall
 recorded in Okaukuejo station at central Etosha National Park, Namibia
 (ENP) 1954-2020. 3.Average fraction of
 photosynthetically active radiation (FPAR) data across the study area
 during the study periods (2009-2010; 2018-2019), originally downloaded
 from NASA LP DAAC. 4.Plains zebra (<em>Equus
 quagga</em>) anthrax mortality in ENP 1980-2020.
 5.Mortality with spatial information (habitat type) in ENP
 1998-2020 for zebra, blue wildebeest (<i>Connochaetes
 taurinus</i>), gemsbok (<i>Oryx
 gazella</i>), springbok (<i>Antidorcas
 marsupialis</i>) and greater kudu
 (<i>Tragelaphus
 strepsiceros</i>). 6.Zebra telemetry
 data thinned with readings closest to 9:00, 15:00 and 24:00, during May
 2009 – August 2010 and October 2018 – April 2020, with 10-time random
 points generated for habitat seleciton analysis.
 7.Zebra telemetry data thinned with fixed intervals of 1, 2, 4,
 8, 12, 24 hours, during May 2009 – August 2010, with 10-time random points
 generated for habitat seleciton analysis.
DOI: 10.15468/dl.bwbf9q
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Sindora glabra"
 ]
}

 The dataset includes 53 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002830-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ht76hdrf8
title: Cytb + ND2 Prinia gracilis complex

description: Prinias (Cisticolidae: Prinia) are resident warblers of open areas across
 Africa and Asia and include many polytypic species whose species
 limits have not been seriously reevaluated recently. Based on an
 integrative taxonomic analysis of morphology, song, and
 mitochondrial DNA (mtDNA), we suggest that 2 species should be recognized
 in the Graceful Prinia (Prinia gracilis) complex. In addition,
 our morphological analyses show the existence of a well-marked
 undescribed form in southeastern Somalia, which we name herein as
 a new subspecies. Prinia gracilis is a small, drab,
 long-tailed species with streaking above and plain pale
 underparts that has been suggested to fall into 2 groups: the
 southwestern nominate group (from Egypt to Oman) and the
 northeastern lepida group (from Turkey through India). However,
 the characters presented to justify this grouping are variable
 and show a mosaic pattern, and whether genetic and
 vocal differences exist is unknown. We found consistent
 between-group song differences, with the nominate group
 giving consistently longer inter-phrase intervals, whereas the
 members of the lepida group sing an essentially continuous reel.
 An mtDNA tree suggests a deep split between the nominate and lepida
 groups, with a coalescence time between these clades of ~ 2.2
 million years ago. Vocal and mtDNA analyses provided evidence that the
 northeastern Arabian Peninsula taxon carpenteri belongs to the
 lepida group. We found that, of all the morphological characters
 proposed, only proportions and tail barring and spotting
 relatively consistently distinguish the 2 groups. However, these
 characters strongly suggest that the eastern Arabian Peninsula is
 populated by taxa of both the gracilis and lepida groups, in
 different areas, but we lack genetic and bioacoustic data to
 corroborate this. Although further study is needed in potential
 contact zones, we suggest that 2 species should be recognized in
 the P. gracilis complex, and we propose the retention of
 the English name Graceful Prinia for P. gracilis sensu stricto,
 while we suggest that P. lepida be known as Delicate Prinia.
DOI: 10.5061/dryad.2547d7wq4
title: Merging computational fluid dynamics and machine learning to reveal animal migration strategies

description: Understanding how  migratory animals interact with dynamic
 physical environments remains a major challenge in migration biology.
 Interactions between migrants and wind and water currents are often poorly
 resolved in migration models due to both the lack of a high-resolution
 environmental data, and a lack of understanding of how migrants respond to
 fine scale structure in the physical environment. Here we develop a
 generalizable, data-driven methodology to study the migration of animals
 through complex physical environments. Our approach combines validated
 Computational Fluid Dynamic (CFD) modeling with animal tracking data to
 decompose migratory movements into two components: movement caused by
 physical forcing, and movement due to active locomotion. We then use a
 flexible recurrent neural network model to relate local environmental
 conditions to locomotion behavior of the migrating animal, allowing us to
 predict a migrant's force production, velocity and trajectory over
 time. We apply this framework to a large dataset containing measured
 trajectories of migrating Chinook salmon through a section of river in
 California's Sacramento-San Joaquin Delta. We show that the model is
 capable of describing fish migratory movements as a function of local flow
 variables, and that it is possible to accurately forecast migratory
 movement behavior of individual migrants on which the model was not
 trained.  After validating our model, we show how our framework
 can be used to understand how migrants respond to local flow conditions,
 how migratory behavior changes as overall conditions in the system change,
 and how the energetic cost of migratory movements depend on environmental
 conditions in space and time. Our framework is flexible and can readily be
 applied to other species and systems.
DOI: 10.5061/dryad.kd51c5b54
title: Data and R codes: species range-size variation in oaks

description: We used occurrence data of 183 oak species (Quercus spp.) in North and
 South America to test how niche breadth and niche position affect the
 amount of suitable habitat area, and how colonization ability and
 post-glacial migration lags affect range filling. This dataset includes
 the data and R files related to the analyses.
DOI: 10.5061/dryad.c866t1g66
title: European Sempervivum tectorum soil pH and iButton soil temperature time series measurement raw data.

description: Ecogeographical displacement of homoploid hybrid lineages from their
 parents is well documented and considered an important mechanism to
 achieve reproductive isolation. In this study, we investigated the origin
 of the flowering plant species Sempervivum tectorum in the Massif Central
 (France) through homoploid hybridization between lineages of the species
 from the Rhine Gorge area (Germany) and the Pyrenees (France). We used
 genotyping-by-sequencing genetic data as evidence for the hybrid origin of
 the Massif Central lineage, and WorldClim climatic data and soil pH and
 soil temperature data collected by us for ecological niche and species
 distribution modelling. We could show that the Massif Central lineage is
 of homoploid hybrid origin, and that the niche of this lineage is
 significantly different from those of the parental lineages. In comparison
 to the parental niches, different variables of the niche of the hybrid
 lineage are intermediate, parental combined or extreme. The different
 niche of the Massif Central populations thus can plausibly be interpreted
 as hybridization-derived. Our species distribution modelling for the Last
 Glacial Maximum and Mid-Holocene showed that the potential distribution of
 the hybrid lineage at the likely time of its origin in the Quaternary
 possibly was parapatric in relation to the largely sympatric distributions
 of the parental lineages. We hypothesize that reproductive isolation of
 the hybrid lineage from the parental lineages resulted from the
 segregation of distribution ranges by a differential response of the three
 lineages to a warming climate.
DOI: 10.5061/dryad.fn2z34tsw
title: Effects of pigment richness and size variation on coexistence, richness and function in light limited phytoplankton

description: 1. Trait diversity is traditionally seen as promoting species richness and
 ecosystem function. Species with dissimilar traits would partition
 available resources, increasing niche differences, facilitating
 coexistence and increasing ecosystem function. 2. Here we first show,
 using theory and simulations for light-limited phytoplankton, that combing
 photosynthetic pigments is indeed a necessary condition for coexistence
 and stimulates ecosystem function. 3. However, pigment richness does
 mostly not permit the coexistence of more than two species, and increases
 productivity at most 40\% compared to single-pigment communities. That is
 because blending in more pigments leads to coexistence of species with
 many pigments and therefore flat absorption spectra, which equalizes their
 fitness but decreases their niche differences. Similarly, seeding species
 with more variable size leads to an excess of large-celled species, which
 does not only decrease fitness differences, but also niche differences. 4.
 Empirical data and additional simulations suggest that pigment richness
 effects can be stronger during transient dynamics but inevitably weaken
 with time, i.e. pigment richness effects on species richness and function
 are likely short-lived. 5. Synthesis. Our results highlight the need to
 apply coexistence theory to understand the long-term effects of trait
 diversity on biodiversity and ecosystem function.
DOI: 10.15468/dl.xvtqmj
title: Occurrence Download

description: A dataset containing 44071222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyanocorax chrysops, Cyanocorax dickeyi, Cyanopica cooki, Cyanopica cyanus, Dendrocitta vagabunda, Diuca diuca, Emberiza bruniceps, Emberiza cioides, Emberiza citrinella, Emberiza elegans, Emberiza hortulana, Emberiza melanocephala, Emberiza rutila, Emberiza spodocephala, Entomyzon cyanotis, Eophona migratoria, Erythrura gouldiae, Estrilda astrild, Estrilda caerulescens, Estrilda melpoda, Estrilda perreini, Estrilda rhodopyga, Estrilda rufibarba, Estrilda troglodytes, Eumyias thalassinus, Euodice cantans, Euodice malabarica, Euphagus carolinus, Euplectes afer, Euplectes albonotatus, Euplectes ardens, Euplectes aureus, Euplectes axillaris, Euplectes diadematus, Euplectes franciscanus, Euplectes gierowii, Euplectes hordeaceus, Euplectes jacksoni, Euplectes macroura, Euplectes nigroventris, Euplectes orix, Euplectes progne, Ficedula albicollis, Ficedula strophiata, Foudia madagascariensis, Foudia rubra, Fringilla coelebs, Fringilla montifringilla, Garrulax albogularis, Garrulax chinensis, Garrulax cineraceus, Garrulax leucolophus, Garrulax ocellatus, Garrulax pectoralis, Garrulax perspicillatus, Geokichla citrina, Geokichla erythronota, Geokichla sibirica, Gracula religiosa, Gracupica contra, Gracupica nigricollis, Grallina cyanoleuca, Gymnorhina tibicen, Gymnoris superciliaris, Haemorhous mexicanus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44071222 records from 7710 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002567-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15556900
title: Expert System
DOI: 10.5281/zenodo.15556901
title: Expert System
DOI: 10.25345/c5r49gp59
title: MassIVE MSV000100571 - Probing beta arrestin 1 and SH3 protein interactions by HDX-MS
title: HDX-MS study of beta-arrestin-1 (Barr-1) alone and in the presence of SH3, with and without the V2Rpp peptide. All HDX-MS experiments were performed using a Trajan HDX-LEAP liquid-handling robotic system coupled to a Bruker maXis-II ETD ESI-QqTOF mass spectrometer.
DOI: 10.15468/dl.z4w9bw
title: Occurrence Download

description: A dataset containing 984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trinia glauca",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 984 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008634-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7rggry
title: Occurrence Download

description: A dataset containing 970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turgenia latifolia",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 970 records from 116 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008637-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s3h8py
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplodus noct"
 ]
}

 The dataset includes 164 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008636-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srtcrr
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Polygala rectipilis"
 ]
}

 The dataset includes 21 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008639-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u8vuu2
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Turgeniopsis foeniculacea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008641-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.