cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12380708
title: Micromobility Survey Responses.csv

description: Respondents of this survey consist of both avid e-scooter users and non-users at UCLA, and addresses respondents’ scooter parking behaviors and understanding which incentives to parking scooters correctly most resonated with them. The survey was created using Google Form and distributed to the UCLA campus community through social media and listservs. The group posted the survey among UCLA-specific groups on Facebook as well as on other group-messaging apps (e.g. GroupMe) to reach as wide a sampling of the UCLA community as possible from April 17th until May 8th, 2020. The online survey consisted of 12 questions inquiring about topics including students’ parking behavior, parking preference and e-scooter behavior, e-scooter parking on campus, and e-scooter impacts and incentives. To efficiently gather responses, the survey’s questions were mostly multiple choice, sometimes using a sliding scale to appropriately quantify individuals’ responses. For instance, the baseline question, “How often do you ride e-scooters?” contained a range of answers including “never, 1-2 times a quarter, 1-2 times a month, once a week, 2-4 times a week, and daily.” Based on an individual’s answer to this starting question, they would either be guided towards questions more focused on their personal e-scooter behavior or e-scooter parking in general. One question was fill-in-the-blank, as it requested individuals to type in possible locations where e-scooter parking is lacking. The survey results of multiple choice questions were displayed as pie charts and qualitative data was collated and grouped into broad categories for analysis. Finally, all survey questions involving rankings were averaged out to determine the weighted average ranking for each option presented according to SurveyMonkey’s average ranking formula.
DOI: 10.6084/m9.figshare.12380717.v1
title: UCLA Residential Village and Sage Hill Bird Survey Results

description: This data displays the results with regards to bird species from three point locations, De Neve Plaza, Rieber Plaza, Sunset Village Plaza, in the residential village at UCLA. This spreadsheet also includes data from two biodiversity hotspots at UCLA, Sage Hill and the Botanical Garden.
DOI: 10.6084/m9.figshare.12380678
title: Measurement data by CRDS system at MIU in 2019

description: This is raw data obtained by the measurement using the Picarro G4301 along the east side of the north-facing gallery at the ground level −500 m in the Mizunami Underground Research Laboratory, Japan in 2019. The excel file "CRDSmonitoring_MIU2019.xlsx" includes data by monitoring for 30 s at 0.5 (5–45 m<b> </b>from the measurement starting point) and 1-m (53–109 m) steps. The excel file "CRDSscan_MIU2019.xlsx" includes data by round-trip “Scan by walking” at the speed of 0.5 m/s, with data for bubbles in water inflow from apertures in the concrete floor at 69 m, and data from flux measurement at 40 m.
DOI: 10.6084/m9.figshare.12380705
title: Contingency Tables

description: This dataset describes counts of each time an indicated behavior was performed by a Corvus brachyrhynchos (American crow) individual encountered on a survey near the Venice Beach, California least tern colony.<br>The behaviors included are as follows:[F - A] Foraging: Anthropogenic Sources[F - NA] Foraging: Non-Anthropogenic Sources[F - P] Foraging: Predation[Sc] Scanning[R] Roosting[P] Perching[T] Traveling[T - F] Traveling: In-Flight[VO] Vocalizations[G] Grooming[OS] Out of sight<br>The routes surveyed are as follows:<br>"beach" - The beach route ran north along Venice beach, parallel to the ocean, from the tern colony until the pier adjacent to Washington Blvd."resid" - The residential route ran north on Pacific Ave alongside the Ballona Lagoon, crossed to the east side of the channel, and continued north on Via Marina until ending at Washington Blvd. "rest" - The restaurant route started at the west end of Washington Blvd at the Venice Beach pier and continued east on Washington Boulevard for half a mile.<br>Refer to our "Final Paper" document for a detailed description on the distinctions between the five clusters. <br>
DOI: 10.6084/m9.figshare.12380720
title: Data about "Size-Resolved Mixing States and Sources of Amine-Containing Particles in the East China Sea: A cruise campaign"

description: Single-particle aerosol mass spectrometry (SPAMS) was employed during a cruise campaign from June 3 to June 27, 2017 to investigate the mixing states and sources of amine-containing particles in the East China Sea.
DOI: 10.6084/m9.figshare.12380678.v1
title: Measurement data by CRDS system at MIU in 2019

description: This is raw data obtained by the measurement using the Picarro G4301 along the east side of the north-facing gallery at the ground level −500 m in the Mizunami Underground Research Laboratory, Japan in 2019. The excel file "CRDSmonitoring_MIU2019.xlsx" includes data by monitoring for 30 s at 0.5 (5–45 m<b> </b>from the measurement starting point) and 1-m (53–109 m) steps. The excel file "CRDSscan_MIU2019.xlsx" includes data by round-trip “Scan by walking” at the speed of 0.5 m/s, with data for bubbles in water inflow from apertures in the concrete floor at 69 m, and data from flux measurement at 40 m.
DOI: 10.6084/m9.figshare.12380651
title: Gene database of Escherichia coli ATCC 11775

description: <i>Escherichia coli</i> is a rod-shaped, Gram-negative bacterium that could subsist on a variety of substrates. A commensal in the human gastrointestinal tract, some strains of the bacterium are also opportunistic pathogens. But, most importantly, <i>E. coli</i> is a well-studied microorganism that have found uses in many areas of biotechnology. This work reports the gene database of <i>E. coli</i> ATCC 11775. Using the annotated genome downloaded from GenBank, this work uses an in-house MATLAB parsing software to read, extract and build a gene database of the bacterium comprising gene identifier, gene function, and gene sequence of all genes in the genome of the bacterium. The gene database should find use in a variety of genome editing and molecular cloning workflows seeking to uncover additional mysteries of this biotechnology workhorse.
DOI: 10.6084/m9.figshare.12380615
title: The raw data for antimicrobial activity (Endophytic fungi of Tupista chinensis Baker).xlsx

description: The raw data for antimicrobial activity
DOI: 10.6084/m9.figshare.12380615.v1
title: The raw data for antimicrobial activity (Endophytic fungi of Tupista chinensis Baker).xlsx

description: The raw data for antimicrobial activity
DOI: 10.6084/m9.figshare.12380564
title: A large deletion on CFA28 omitting ACSL5 is associated with lipid malabsorption in Australian Kelpies

description: Inborn errors of metabolism are rare genetic conditions characterised by a disruption of intermediary metabolic pathways, causing defective absorption and metabolism of dietary nutrients. In a Kelpie breeding population, 14 puppies presented with lipid malabsorption. Juvenile dogs exhibited stunted postnatal growth, steatorrhea, abdominal bloating and a wiry coat. Pancreatic enzyme supplementation improved growth and reduced juvenile mortality rates, though adult dogs remain smaller in stature and continue to suffer intolerance to dietary fat. Using genome-wide association analysis, an associated locus on CFA28 (P<sub>raw</sub>= 2.87E<sup>-06</sup>) was discovered and validated in a closely related population (P<sub>raw </sub>= 1.75E<sup>-45</sup>). A 103.7 kb deletion containing genes Acyl-CoA Synthetase Long Chain Family Member 5 (ACSL5) and Zinc Finger DHHC-Type Containing 6 (ZDHHC6), was characterised using whole transcriptomic data. Comparative analysis revealed no expression of ACSL5 and disrupted splicing of ZDHHC6 in jejunal tissue of affected Kelpies. ACSL5 plays a key role in long chain fatty acid absorption while ZDHHC6 has not been previously implicated in metabolic disorders. A PCR-based diagnostic test was developed and confirmed fully penetrant Mendelian recessive mode of inheritance. We conclude the structural variant causing a deletion of the ACSL5 gene is the most likely cause for lipid malabsorption in the Australian Kelpie.
DOI: 10.6084/m9.figshare.12380384
title: TableS4.xlsx

description: test
DOI: 10.6084/m9.figshare.12380228
title: small-example.tar.gz

description: Small simulated example to test pamir 2.1.0
DOI: 10.6084/m9.figshare.12380303
title: small-example.tar.gz

description: Example dataset for pamir 2.1.0<br>
DOI: 10.6084/m9.figshare.12380228.v1
title: small-example.tar.gz

description: Small simulated example to test pamir 2.1.0
DOI: 10.6084/m9.figshare.12380303.v1
title: small-example.tar.gz

description: Example dataset for pamir 2.1.0<br>
DOI: 10.6084/m9.figshare.12380384.v1
title: TableS4.xlsx

description: test
DOI: 10.6084/m9.figshare.12379895
title: Rocky Mountain National Park Teaching Data Subset

description: This subset contains data for rocky mountain national park. We will slowly build out the repo with time but for now it contains NED data 1 arc-second (30m) that covers the park boundary. Data were downloaded from the National Map.<br>
DOI: 10.6084/m9.figshare.12379895.v1
title: Rocky Mountain National Park Teaching Data Subset

description: This subset contains data for rocky mountain national park. We will slowly build out the repo with time but for now it contains NED data 1 arc-second (30m) that covers the park boundary. Data were downloaded from the National Map.<br>
DOI: 10.6084/m9.figshare.12378608.v1
title: Appendices_v20200527.docx

description: Appendix I: Data CollectionAppendix II: Borderline Media CampaignsAppendix III: Intercoder Reliability<br>
DOI: 10.6084/m9.figshare.12378221
title: Database Oenanthe moult

description: Raw data employed<br>
DOI: 10.6084/m9.figshare.12378245
title: Figure 5_data

description: Excel file containing the data presented in Figure 5. Diversity of plasmid-bearer species in each plasmid-donor community. Species diversity was calculated as the 1-D Simpson’s Index by using the end-point population densities of the plasmid-bearer species in each plasmid-donor community. Replicate populations A-F. Plasmid donors, P. fluorescens, P. stutzeri, P. putida. Plasmid density cfu/g soil. Mercury selection 0, 16ug/g Hg(II). d_1 is the 1-D Simpson’s Index.
DOI: 10.6084/m9.figshare.12378281
title: EEG data supporting the published article: Perceptual decision-making in children: Age-related differences and EEG correlates.

description: This fileset contains EEG data. Datasets <b>Formatted_XXXX.3_40_preproc.mat </b>(122 datasets), demographics_incl.csv and MarkUpFile.docx support the findings reported in both published articles “Neural dynamics underlying coherent motion perception in children and adults” (Manning et al., 2019) and “Perceptual decision-making in children: Age-related differences and EEG correlates” (Manning et al. 2020), and are part of both figshare records: <b>https://doi.org/10.6084/m9.figshare.11926794</b> and the existing data record.(<b>https://doi.org/10.6084/m9.figshare.12378281</b>). More details on the content of these datasets are provided in data file <b>DDMTDpaper_DataUpload.docx</b>.<br><b>Software needed to access data</b>: .mat data files can be accessed using the MATLAB software.<br>
DOI: 10.6084/m9.figshare.12378218
title: Metadata record for: Spatiotemporal force and motion in collective cell migration

description: This dataset contains key characteristics about the data described in the Data Descriptor Spatiotemporal force and motion in collective cell migration. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12378245.v1
title: Figure 5_data

description: Excel file containing the data presented in Figure 5. Diversity of plasmid-bearer species in each plasmid-donor community. Species diversity was calculated as the 1-D Simpson’s Index by using the end-point population densities of the plasmid-bearer species in each plasmid-donor community. Replicate populations A-F. Plasmid donors, P. fluorescens, P. stutzeri, P. putida. Plasmid density cfu/g soil. Mercury selection 0, 16ug/g Hg(II). d_1 is the 1-D Simpson’s Index.
DOI: 10.6084/m9.figshare.12378200
title: Supplemental Script S1

description: In the zip file it is the script and files required for running the script.
DOI: 10.6084/m9.figshare.12378218.v1
title: Metadata record for: Spatiotemporal force and motion in collective cell migration

description: This dataset contains key characteristics about the data described in the Data Descriptor Spatiotemporal force and motion in collective cell migration. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12378200.v1
title: Supplemental Script S1

description: In the zip file it is the script and files required for running the script.
DOI: 10.17045/sthlmuni.12378125
title: Audusseau_et_al_2020Sci.TotalEnviron.xlsx

description: The file include the raw data and metadata. The data correspond to the study an earthworm community in an urban wasteland. Over 87 quadrats distributed over all the site we measured the concentrations in 38 elements by X-ray Fluorescence and we sampled the earthworm community in each quadrat. ICP-OES measurements of Cd, Cu, Pb, and Zn concentrations in Lumbricus castaneus individuals and their associated soils were done for 30 of the 87 quadrats in order to study the ability of this species to bioaccumulate metals. Finally, we genotyped 175 individuals of Lumbricus castaneus at 8 microsatellites to study the population genetics of this species at the scale of the site and across the pollution gradient.
DOI: 10.17045/sthlmuni.12378125.v1
title: Audusseau_et_al_2020Sci.TotalEnviron.xlsx

description: The file include the raw data and metadata. The data correspond to the study an earthworm community in an urban wasteland. Over 87 quadrats distributed over all the site we measured the concentrations in 38 elements by X-ray Fluorescence and we sampled the earthworm community in each quadrat. ICP-OES measurements of Cd, Cu, Pb, and Zn concentrations in Lumbricus castaneus individuals and their associated soils were done for 30 of the 87 quadrats in order to study the ability of this species to bioaccumulate metals. Finally, we genotyped 175 individuals of Lumbricus castaneus at 8 microsatellites to study the population genetics of this species at the scale of the site and across the pollution gradient.
DOI: 10.6084/m9.figshare.12378098.v1
title: Spirituelle Verwirklichung nach der Philosophie des Kashmir Shaivismus.pdf

description: This is an explanation of the application of Kashmir Shaivism for Self-Realization
DOI: 10.6084/m9.figshare.12378077.v1
title: Crossectional DO heart data

description: RNA_dataset_raw.csv: raw counts matrix for RNA data.RNA_dataset_norm.csv: variance-stabilizing transformation (vst) normalized RNA data.protein_dataset_norm.csv: processed mass-spectrometry data.
DOI: 10.6084/m9.figshare.12378077.v2
title: Aging_Heart_DO_project_2020

description: RNA_dataset_raw.csv: raw counts matrix for RNA data.RNA_dataset_norm.csv: variance-stabilizing transformation (vst) normalized RNA data.protein_dataset_norm.csv: processed mass-spectrometry data.
DOI: 10.6084/m9.figshare.12377858
title: Word Representations for Clinical Danish

description: Word embeddings and word clusters for Clinical Danish, drawn from the heavily-anonymised E4C resource (https://doi.org/10.1177/1460458216647760) and presented here as statistical aggregate data over those records. Vocabulary of 382737 words. Vectors have 100 dimensions. Clusters generated using Generalised Brown clustering with a=2500 and a minimum count of 3; coarser clusters can be generated rapidly from the included mergefile (see https://github.com/sean-chester/generalised-brown/blob/master/cluster_generator/cluster.py)<br>Data statement included<br>
DOI: 10.6084/m9.figshare.12377858.v1
title: Word Representations for Clinical Danish

description: Word embeddings and word clusters for Clinical Danish, drawn from the heavily-anonymised E4C resource (https://doi.org/10.1177/1460458216647760) and presented here as statistical aggregate data over those records. Vocabulary of 382737 words. Vectors have 100 dimensions. Clusters generated using Generalised Brown clustering with a=2500 and a minimum count of 3; coarser clusters can be generated rapidly from the included mergefile (see https://github.com/sean-chester/generalised-brown/blob/master/cluster_generator/cluster.py)<br>Data statement included<br>
DOI: 10.6084/m9.figshare.12377696
title: Altered protein expression and phosphorylation from retroperitoneal adipose tissue of ovariectomy rats.xlsx

description: Menopause is often accompanied by visceral obesity. With the aim of exploring the consequences of ovarian failure on visceral fat, we evaluated the effects of ovariectomy and estrogen replacement on the proteome/phosphoproteome and on the fatty acids profile of the retroperitoneal adipose depot (RAT) of rats. Eighteen three months old female Wistar rats were either ovariectomized or sham-operated and fed with standard chow for three months. A sub-group of ovariectomized rats received estradiol replacement. RAT samples were analyzed using data-independent acquisitions LC-MS/MS and pathway analysis was performed with the differentially expressed/phosphorylated proteins. RAT lipid profile was analyzed by gas chromatography. Ovariectomy induced high adiposity and insulin resistance and promoted alterations in protein expression and phosphorylation. Pathway analysis showed that 5 pathways were significantly affected by ovariectomy, namely metabolism of lipids (included fatty acid metabolism and mitochondrial fatty acid β-oxidation), fatty acyl-CoA biosynthesis, innate immune system (included neutrophil degranulation), metabolism of vitamins and cofactors, and integration of energy metabolism (included ChREBP activates metabolic gene expression). Lipid profile analysis showed increased palmitic and palmitoleic acids content. The analysis of the data indicated that ovariectomy favored lipogenesis while it impaired fatty acids oxidation, and induced a pro-inflammatory state in the visceral adipose tissue. These effects are consistent with the findings of high adiposity, hyperleptinemia, and impaired insulin sensitivity. The observed alterations were partially attenuated by estradiol replacement. The data point to a role of disrupted lipid metabolism in adipose tissue in the genesis of obesity after menopause.
DOI: 10.6084/m9.figshare.12377720
title: Ya'qub's_Plan

description: test maDMP
DOI: 10.6084/m9.figshare.12377741
title: Data used in AutoTax paper

description: Data used in the paper "Comprehensive ecosystem-specific 16S rRNA gene databases with automated taxonomy assignment (AutoTax) provide species-level resolution in microbial ecology", see reference.
DOI: 10.6084/m9.figshare.12377696.v1
title: Altered protein expression and phosphorylation from retroperitoneal adipose tissue of ovariectomy rats.xlsx

description: Menopause is often accompanied by visceral obesity. With the aim of exploring the consequences of ovarian failure on visceral fat, we evaluated the effects of ovariectomy and estrogen replacement on the proteome/phosphoproteome and on the fatty acids profile of the retroperitoneal adipose depot (RAT) of rats. Eighteen three months old female Wistar rats were either ovariectomized or sham-operated and fed with standard chow for three months. A sub-group of ovariectomized rats received estradiol replacement. RAT samples were analyzed using data-independent acquisitions LC-MS/MS and pathway analysis was performed with the differentially expressed/phosphorylated proteins. RAT lipid profile was analyzed by gas chromatography. Ovariectomy induced high adiposity and insulin resistance and promoted alterations in protein expression and phosphorylation. Pathway analysis showed that 5 pathways were significantly affected by ovariectomy, namely metabolism of lipids (included fatty acid metabolism and mitochondrial fatty acid β-oxidation), fatty acyl-CoA biosynthesis, innate immune system (included neutrophil degranulation), metabolism of vitamins and cofactors, and integration of energy metabolism (included ChREBP activates metabolic gene expression). Lipid profile analysis showed increased palmitic and palmitoleic acids content. The analysis of the data indicated that ovariectomy favored lipogenesis while it impaired fatty acids oxidation, and induced a pro-inflammatory state in the visceral adipose tissue. These effects are consistent with the findings of high adiposity, hyperleptinemia, and impaired insulin sensitivity. The observed alterations were partially attenuated by estradiol replacement. The data point to a role of disrupted lipid metabolism in adipose tissue in the genesis of obesity after menopause.
DOI: 10.6084/m9.figshare.12377720.v1
title: Ya'qub's_Plan

description: test maDMP
DOI: 10.6084/m9.figshare.12377651
title: Comparing the minimum celeration line and the beat your personal best goal-setting approaches during the mathematical practice of students diagnosed with autism

description: Here you will find the additional data from our study, such as the raw data and the behavioural metrics we calculated but did not report in the paper.
DOI: 10.6084/m9.figshare.12377651.v1
title: Comparing the minimum celeration line and the beat your personal best goal-setting approaches during the mathematical practice of students diagnosed with autism

description: Here you will find the additional data from our study, such as the raw data and the behavioural metrics we calculated but did not report in the paper.
DOI: 10.6084/m9.figshare.12377255
title: Mitochondrial toxicity and <i>in vitro</i> biological effects of ambient PM<sub>2.5</sub> from an urban site in China

description: The roles of PM<sub>2.5</sub>-induced mitochondrial damage and oxidative stress on mast cell degranulation were examined <i>in vitro</i>. Mast cells were treated with suspensions of PM<sub>2.5</sub> in Dulbecco’s modified Eagle’s medium at concentrations from 25 to 200 mg/L in the absence or presence of 10 mmol/L N-acetyl-L-cysteine. Biological effects and mitochondrial function were assessed by determining cell viability, β-hexosaminidase release, interleukin-4 secretion, reactive oxygen species generation, adenosine triphosphate production, potential alteration of mitochondrial membrane, and activities of mitochondrial electron transport chain complexes I and III. Exposure of mast cells to PM<sub>2.5</sub> induced reduction of adenosine triphosphate production, collapse of mitochondrial membrane potential, and inhibition of the activity of complex III. Co-treatment of mast cells exposed to PM<sub>2.5</sub> with N-acetyl-L-cysteine attenuated cytotoxicity and the production of reactive oxygen species, and decreased the release of β-hexosaminidase and interleukin-4. Evidently, PM<sub>2.5</sub>-induced oxidative stress plays an essential role in mitochondrial toxicity and mast cell activation.