cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.usfdbk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pandalus borealis Krøyer, 1838",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052770-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jvg8dmm3xp.1
title: Measurement data on the window opening behavior and climate in a strongly daylit office building

description: Long-term measurement data of temperature and relative humidity and window openings from an open-plan office as well as wind speed and temperature of the outdoor situation are presented. Dataset 1: Temperature and relative humidity (indoor); Dataset 2: Outdoor temperature; Dataset 3: Wind speed, measured on the building roorf; Dataset (4): Window openings. Further details about the study object, the sensors, the measurement setup, the limitations and especially the data structure can be found in the Data in Brief: Link will be added.
DOI: 10.17632/jvg8dmm3xp.2
title: Measurement data on the window opening behavior and climate in a strongly daylit office building

description: Long-term measurement data of temperature and relative humidity and window openings from an open-plan office as well as wind speed and temperature of the outdoor situation are presented. Dataset 1: Indoor temperature and relative humidity (Sep 02, 2020 – Aug 31, 2022); Dataset 2: Outdoor temperature (Sep 02, 2020 – Aug 31, 2022); Dataset 3: Wind speed, measured on the building roorf (July 01, 2021 – Aug 31, 2022); Dataset 4: Window openings (Sep 02, 2020 – Aug 31, 2022). Further details about the study object, the sensors, the measurement setup, the limitations and especially the data structure can be found in the Data in Brief: https://doi.org/10.1016/j.dib.2022.108794
DOI: 10.6084/m9.figshare.26505922
title: Glomerular circadian transcriptomics (meta2d BHQ &lt;0.1)Podocyte circadian transcriptomics (meta2d BHQ &lt;0.1)Kidney circadian proteomics meta2d (p val &lt;0.05)

description: For circadian kidney collection, eight-week-old male and female wildtype (C57BL/6J) mice were kept in Dark-Dark for 36 h prior to the onset of tissue collection and until they were sacrificed by cervical neck dislocation. Circadian time (CT) corresponds to administration of light in the animal room in normal Light-Dark schedule; CT0 indicates 6am. Kidneys were harvested at 4 h intervals for 48 h and immediately snap frozen and stored at -80<sup>o</sup>C for later processing. For the glomerular circadian transcriptomics, glomeruli were sieve-isolated from thawed kidneys and RNA was isolated using TRIzol. RNA was checked for quality and prepared for sequencing in the Genomic Technologies Core Facility in Manchester. RNA-seq counts were normalized using DESeq2 (v1.28.1) and rhythmic genes were identified with MetaCycle. For the kidney circadian proteomics, kidneys from eight-week-old male and female wildtype (C57BL/6J) mice harvested during the time-series tissue collection described above were used for mass spectrometry-based proteomics. Mouse kidneys were enriched for matrix proteins and peptide samples were analyzed by liquid chromatography (LC)-tandem mass spectrometry using a Thermo Exploris 480 mass spectrometer (Thermo Fisher Scientific). The meta2d function from Metacycle was used to identify rhythmic proteins detected in at least 2 out of the 3 replicates per circadian time.For the time-series cell collection, primary podocytes were cultured from kidneys of wildtype mice (C57BL/6J, aged eight weeks) for 14 days. Podocytes were harvested in BL buffer containing 0.1% 1-Thioglycerol (Promega) and immediately snap-frozen at 4 h intervals for 48 h starting at 15 h post-synchronization with dexamethasone. RNA was isolated and purified using a ReliaPrep RNA Cell Miniprep System (Promega) as per manufacturers protocol. RNA was checked for quality and prepared for sequencing in the Genomic Technologies Core Facility in Manchester. RNA-seq counts were normalized using DESeq2 (v1.28.1) and rhythmic genes were identified with MetaCycle.
DOI: 10.15468/dl.2xnsqz
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharodon carcharias (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052771-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25386616
title: Inhomogeneity Ratio for Nearly Field-Aligned Electrons Interacting with Whistler-Mode Waves

description: This is the data of the letter with corresponding title submitted to GRL
DOI: 10.5281/zenodo.13136642
title: Rapid phenotypic and genotypic change in a laboratory schistosome population

description: The present dataset contains all phenotype data and input files, as well as shell and R scripts used for data analysis and generation of figures (1-5, S1-S2) present in the manuscript entitled "Rapid phenotypic and genotypic change in a laboratory schistosome population."

Abstract

Background: Genomic analysis has revealed extensive contamination among laboratory-maintained microbes including malaria parasites, Mycobacterium tuberculosis and Salmonella spp. Here, we provide direct evidence for recent contamination of a laboratory schistosome parasite population, and we investigate its genomic consequences. The Brazilian Schistosoma mansoni population SmBRE has several distinctive phenotypes, showing poor infectivity, reduced sporocysts number, low levels of cercarial shedding and low virulence in the intermediate snail host, and low worm burden and low fecundity in the vertebrate rodent host. In 2021 we observed a rapid change in SmBRE parasite phenotypes, with a ~10x increase in cercarial production and ~4x increase in worm burden. 

Methods: To determine the underlying genomic cause of these changes, we sequenced pools of SmBRE adults collected during parasite maintenance between 2015 and 2023. We also sequenced another parasite population (SmLE) maintained alongside SmBRE without phenotypic changes. 

Results: While SmLE allele frequencies remained stable over the eight-year period, we observed sudden changes in allele frequency across the genome in SmBRE between July 2021 and February 2023, consistent with expectations of laboratory contamination. (i) SmLE-specific alleles rose in the SmBRE population from 0 to 41-46% across the genome between September and October 2021, documenting the timing and magnitude of the contamination event. (ii) After contamination, strong selection (s = ~0.23) drove replacement of low fitness SmBRE with high fitness SmLE alleles. (iii) Allele frequency changed rapidly across the whole genome, except for a region on chromosome 4 where SmBRE alleles remained at high frequency. 

Conclusions: We were able to detect contamination in this case because SmBRE shows distinctive phenotypes. However, this would likely have been missed with phenotypically similar parasites. These results provide a cautionary tale about the importance of tracking the identity of parasite populations, but also showcase a simple approach to monitor changes within populations using molecular profiling of pooled population samples to characterize fixed single nucleotide polymorphisms. We also show that genetic drift results in continuous change even in the absence of contamination, causing parasites maintained in different labs (or sampled from the same lab at different times) to diverge.
DOI: 10.5281/zenodo.13136643
title: Rapid phenotypic and genotypic change in a laboratory schistosome population

description: The present dataset contains all phenotype data and input files, as well as shell and R scripts used for data analysis and generation of figures (1-5, S1-S2) present in the manuscript entitled "Rapid phenotypic and genotypic change in a laboratory schistosome population."

Abstract

Background: Genomic analysis has revealed extensive contamination among laboratory-maintained microbes including malaria parasites, Mycobacterium tuberculosis and Salmonella spp. Here, we provide direct evidence for recent contamination of a laboratory schistosome parasite population, and we investigate its genomic consequences. The Brazilian Schistosoma mansoni population SmBRE has several distinctive phenotypes, showing poor infectivity, reduced sporocysts number, low levels of cercarial shedding and low virulence in the intermediate snail host, and low worm burden and low fecundity in the vertebrate rodent host. In 2021 we observed a rapid change in SmBRE parasite phenotypes, with a ~10x increase in cercarial production and ~4x increase in worm burden. 

Methods: To determine the underlying genomic cause of these changes, we sequenced pools of SmBRE adults collected during parasite maintenance between 2015 and 2023. We also sequenced another parasite population (SmLE) maintained alongside SmBRE without phenotypic changes. 

Results: While SmLE allele frequencies remained stable over the eight-year period, we observed sudden changes in allele frequency across the genome in SmBRE between July 2021 and February 2023, consistent with expectations of laboratory contamination. (i) SmLE-specific alleles rose in the SmBRE population from 0 to 41-46% across the genome between September and October 2021, documenting the timing and magnitude of the contamination event. (ii) After contamination, strong selection (s = ~0.23) drove replacement of low fitness SmBRE with high fitness SmLE alleles. (iii) Allele frequency changed rapidly across the whole genome, except for a region on chromosome 4 where SmBRE alleles remained at high frequency. 

Conclusions: We were able to detect contamination in this case because SmBRE shows distinctive phenotypes. However, this would likely have been missed with phenotypically similar parasites. These results provide a cautionary tale about the importance of tracking the identity of parasite populations, but also showcase a simple approach to monitor changes within populations using molecular profiling of pooled population samples to characterize fixed single nucleotide polymorphisms. We also show that genetic drift results in continuous change even in the absence of contamination, causing parasites maintained in different labs (or sampled from the same lab at different times) to diverge.
DOI: 10.15468/dl.da5vzt
title: Occurrence Download

description: A dataset containing 36479767 species occurrences available in GBIF matching the query:
{
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 36479767 records from 4759 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052743-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/9n2veq
title: A new Costa Rican species of Drosophila visiting inflorescences of the hemi-epiphytic climber Monstera lentii (Araceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vilela, Carlos R., Prieto, Danyi (2018): A new Costa Rican species of Drosophila visiting inflorescences of the hemi-epiphytic climber Monstera lentii (Araceae). Revista Brasileira de Entomologia 62 (3): 225-231, DOI: 10.1016/j.rbe.2018.06.002, URL: http://dx.doi.org/10.1016/j.rbe.2018.06.002
DOI: 10.15468/3k73k8
title: A new entomopathogenic fungus, Ophiocordyceps xifengensis sp. nov., from Liaoning, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Fei, Gang-Xiang, Guan, Jing-Qiang, Tian, Hui-Ling, Zhou, Ye-Ming, Qu, Jiao-Jiao, Xu, Zhongshun, Zou, Xiao (2024): A new entomopathogenic fungus, Ophiocordyceps xifengensis sp. nov., from Liaoning, China. Phytotaxa 642 (3): 211-224, DOI: 10.11646/phytotaxa.642.3.1, URL: http://dx.doi.org/10.11646/phytotaxa.642.3.1AbstractOphiocordyceps is an entomopathogenic fungal genus with global distribution and considerable economic implications in both biological control and biomedicine. However, the species diversity of Ophiocordyceps remains to be further investigated. In this study, a new species, Ophiocordyceps xifengensis, found parasitizing lepidopteran pupae, was discovered during a survey of insect pathogenic fungi in Xifeng County, Liaoning Province. Morphological comparative analysis revealed that this species characterized by having solitary, non-branching, woody, cylindrical asci and filamentous ascospores. Compared to its closely related species, the new species exhibits inclined embedded perithecia (0.38–0.43 mm) and smaller asci (164.8–178.9 × 7.4–10.2 μm), with its anamorphic features. Phylogenetic analysis based on multiple gene sequence data infers that Ophiocordyceps xifengensis, forming a distinct branch from other closely related species.
DOI: 10.15468/qnqw78
title: Pushing the Limits: New Data on the Morphology of Geophilus impressus C. L. Koch, 1847 (Geophilomorpha: Geophilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Popovici, George (2022): Pushing the Limits: New Data on the Morphology of Geophilus impressus C. L. Koch, 1847 (Geophilomorpha: Geophilidae). Ecologica Montenegrina 53: 38-44, DOI: 10.37828/em.2022.53.5, URL: http://dx.doi.org/10.37828/em.2022.53.5AbstractThree Geophilus impressus C. L. Koch, 1847 specimens collected in Băneasa Forest, Southern Romania are described and illustrated. The sampled population represents a new lower limit for the leg-bearing segment number of this species and morphological differences to previous descriptions that cast doubt on the reliability of using size- and agedependent features of the maxillae and last-leg bearing segment when separating it from other closely related Geophilus. A discussion on postulated correlations between number of leg-bearing segments and latitude is presented for G. impressus, as well as on the importance of the carpophagus structures as diagnostic characters among its relatives in Geophilus.
DOI: 10.15468/3f9ywp
title: Chariodema villosa Blanchard, 1850 is also a Blepharotoma Blanchard, 1850 (Coleoptera: Scarabaeidae: Sericoidinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Clavijo-Bustos, Julián, Salazar, Karen, Moreno, Jhon César Neita (2025): Chariodema villosa Blanchard, 1850 is also a Blepharotoma Blanchard, 1850 (Coleoptera: Scarabaeidae: Sericoidinae). Zootaxa 5601 (1): 193-195, DOI: 10.11646/zootaxa.5601.1.12, URL: https://doi.org/10.11646/zootaxa.5601.1.12
DOI: 10.15468/hd6cca
title: The first cranium of Axestemys infernalis (Testudines: Trionychidae) from the Lance Formation of Wyoming, USA; an updated description and phylogenetic analysis

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ponstein, Jasper, Wallaard, Jonathan J. W., Rijke, Maarten de, Fraaije, René H. B. (2024): The first cranium of Axestemys infernalis (Testudines: Trionychidae) from the Lance Formation of Wyoming, USA; an updated description and phylogenetic analysis. Palaeontologia Electronica (a 31) 27 (2): 1-33, DOI: 10.26879/1361, URL: https://doi.org/10.26879/1361ABSTRACTWe report the first trionychid turtle skull from the Lance Formation (Maastrichtian) of Wyoming, USA, a relatively complete cranium of Axestemys infernalis. Included is an osteological and preliminary neuroanatomical description aided by a medical CTscan of the specimen. Comparison with other published crania of A. infernalis yielded considerable intraspecific variation. Notably, our specimen does not bear an ossified premaxilla, the postorbital extends ventrally and the maxilla-jugal suture is positioned posterior to the orbit. Based on this new anatomical data, both a parsimony and a Bayesian analysis of an updated character-taxon matrix of Trionychia have been run, which found A. infernalis as either outside Plastomenidae +Cyclanorbinae or as an early diverging stem-cyclanorbine. Moreover, for the first time a fossil trionychid braincase is described in detail.Jasper Ponstein. AG Paläobiologie und Evolution, Institut für Biologie, Humboldt Universität zu Berlin, Unter den Linden 6, 10117 Berlin, Germany and Museum für Naturkunde Berlin, Leibniz-Institut für Evolutions- und Biodiversitätsforschung, Invalidenstrasse 43, 10115 Berlin, Germany and Oertijdmuseum, Bosscheweg 80, 5283 WB Boxtel, Netherlands. Corresponding author. ponsteij@hu-berlin.deJonathan J.W. Wallaard. Oertijdmuseum, Bosscheweg 80, 5283 WB Boxtel, Netherlands.curator@oertijdmuseum.nlMaarten de Rijke. Oertijdmuseum, Bosscheweg 80, 5283 WB Boxtel, Netherlands.maarten@oertijdmuseum.nlRené H.B. Fraaije. Oertijdmuseum, Bosscheweg 80, 5283 WB Boxtel, Netherlands.info@oertijdmuseum.nl
DOI: 10.15468/av3k2m
title: A new species of Volvariella (Pluteaceae, Basidiomycota) from Western Siberia, Russia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Malysheva, Ekaterina, Kapitonov, Vladimir, Malysheva, Vera (2022): A new species of Volvariella (Pluteaceae, Basidiomycota) from Western Siberia, Russia. Phytotaxa 538 (2): 141-148, DOI: 10.11646/phytotaxa.538.2.6AbstractVolvariella clavocystidiata sp. nov., collected from Western Siberia, is described based on morphological characters and molecular data. The new species is characterized by silky fibrillose whitish pileus, clavate cheilo- and pleurocystidia, and basidiospores on average 6.6 × 4.8 µm and swamp habitat. Detailed morphological descriptions, drawings of microstructures and comparisons with closely related taxa are provided. Phylogenetic analyses inferred from the internal transcribed spacer (nrITS) and 28S nuclear ribosomal large subunit (nrLSU) showed that novel taxon formed independent phylogenetic lineage within the genus Volvariella.
DOI: 10.15468/2dy7s7
title: Impatiens baishaensis (Balsaminaceae): a new species from Sichuan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ding, Bo, Wang, Jia-Cai, Deng, Hong-Ping, Wang, Chao-Ying (2017): Impatiens baishaensis (Balsaminaceae): a new species from Sichuan, China. Phytotaxa 319 (2): 191-196, DOI: 10.11646/phytotaxa.319.2.8, URL: http://dx.doi.org/10.11646/phytotaxa.319.2.8AbstractImpatiens baishaensis B. Ding & H. P. Deng is a new species from Wawu Shan and Dafengding, Sichuan Province, China. The new species is superficially similar to I. oxyanthera in having 2-flowered racemose inflorescences and pink flowers with reddish veins, but differs from the latter by having smaller flowers, abaxial midveins of lateral sepals and dorsal petals puberulent, dorsal petal spotted with purple-red, and lower sepals navicular. Seed micromorphology and palynological features observed with scanning electron microscopy are also presented.
DOI: 10.15468/ybsye4
title: A new Antarctic species of Orchomenella G. O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes?

description: This dataset contains the digitized treatments in Plazi based on the original journal article Giulianini, Piero G, De Broyer, Claude, Hendrycks, Ed A, Greco, Samuele, D’Agostino, Elisa, Donato, Sandro, Giglio, Anita, Gerdol, Marco, Pallavicini, Alberto, Manfrin, Chiara (2024): A new Antarctic species of Orchomenella G. O. Sars, 1890 (Amphipoda: Lysianassoidea: Tryphosidae): is phase-contrast micro-tomography a mature technique for digital holotypes? Zoological Journal of the Linnean Society 201 (3): 1-17, DOI: 10.1093/zoolinnean/zlae075, URL: http://dx.doi.org/10.1093/zoolinnean/zlae075
DOI: 10.15468/7wg9jp
title: À propos de Gonotropis dorsalis (Gyllenhal, 1813) et G. gibbosa LeConte, 1876 en Suisse (Coleoptera, Anthribidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Germann, Christoph, Sanchez, Andreas, Chittaro, Yannick (2017): À propos de Gonotropis dorsalis (Gyllenhal, 1813) et G. gibbosa LeConte, 1876 en Suisse (Coleoptera, Anthribidae). Entomo Helvetica 10: 151-153, DOI: 10.5169/seals-986087Abstract: On Gonotropis dorsalis (Gyllenhal, 1813) and G. gibbosa LeConte, 1876 in Switzerland (Coleoptera, Anthribidae. − Revising specimens of formerly determined G. dorsalis in Swiss collections revealed the identification of exclusively G. gibbosa occuring in Switzerland.
DOI: 10.15468/dl.btkkdk
title: Occurrence Download

description: A dataset containing 9330 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Elephas maximus Linnaeus, 1758, Elephas maximus sumatranus Temminck, 1847, Elephas maximus indicus Cuvier, 1798, Elephas maximus maximus)"
 ]
}

 The dataset includes 9330 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014968-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15187379
title: 1,2-Dibromoarylalkanes from simple hydrocarbons.  DDQ-mediated one-pot reaction.
DOI: 10.5281/zenodo.15187380
title: 1,2-Dibromoarylalkanes from simple hydrocarbons.  DDQ-mediated one-pot reaction.
DOI: 10.21410/7e4/wgyu09/ei7xrp
title: fr.cdsp.ddi.SC2001-ddi25.xml
DOI: 10.21410/7e4/wgyu09/ifektz
title: fr_cdsp_ddi_sc2001-1.tab

description: :unav
DOI: 10.21410/7e4/wgyu09/woxfqy
title: readme.txt

description: :unav
DOI: 10.21410/7e4/wgyu09/yznzji
title: Questionnaire_Science2001.pdf

description: :unav
DOI: 10.21410/7e4/wgyu09
title: Image de la science, 2001

description: En 1972, le Ministère de la Recherche a confié la réalisation d'une étude sur les attitudes du public à l'égard de la recherche scientifique française à une équipe de chercheurs du CEVIPOF. Cette recherche a donné lieu à une série de cinq enquêtes réalisées entre 1972 et 2001. Elle s'intéresse aux représentations de la science, à la perception du développement technique et économique et à l'opinion sur la politique de recherche. Une partie des questions ont été répétées dans les mêmes termes d'une enquête à l'autre, ce qui autorise une comparaison temporelle des attitudes à l'égard de la science. Le questionnaire administré à la fin de l'année 2000 comporte un volet de questions communes aux différentes enquêtes dont les résultats permettent de voir l'évolution des français en matière de perception de la science et de la technique. Une série d'enjeux nouveaux ont été intégrés à cette enquête, notamment sur les thèmes de la sécurité, des biotechnologies et du contrôle de la science et de la technique. In 1972, the Ministry of Research commissioned a CEVIPOF research team to carry out a study on public attitudes to French research. This research programme gave rise to a series of five surveys conducted between 1972 and 2001. They explore representations of science, perceptions of technical and economic development and opinions on research policy. Some of the questions were repeated in the same terms from one survey to another, which makes it possible to compare attitudes to science over time. The questionnaire conducted at the end of 2000 includes a set of questions that are common to all the surveys, so that the results can be used to see changes in the way that the French perceive science and technology. A series of new issues have been included in this survey, notably on the topics of safety, biotechnologies and the monitoring of science and technology.
DOI: 10.21410/7e4/wgyu09/0ok5if
title: fr.cdsp.ddi.science2001.sas.zip

description: :unav