cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p1ycx3nb
title: Estimated crop irrigation water use withdrawals in Sacramento Valley Groundwater Basin, Arizona for 2024

description: Observations of irrigated agricultural land within the Sacramento Valley Groundwater Basin in Arizona. Crops were verified in situ once in 2024 on Jun 6th; based on digitized field boundaries. Field boundaries were digitized from U.S. Department of Agriculture, National Agriculture Imagery Program County Mosaic 2023 imagery for Arizona and supplemented with the Sentinel2 imagery collection accessed via the European Space Agency, Copernicus Browser (https://browser.dataspace.copernicus.eu/). Satellite images were also used in conjunction with OpenET Farm and Ranch Management Support (FARMS; https://farms.etdata.org/) to identify the length of the growing season and crop condition. Water withdrawals were calculated using the modified Blaney-Criddle model of calculating consumptive use (U.S. Bureau of Reclamation, 1992 appendix A) using crop coefficients from Doorenbos and Pruitt (1975), the number of acres with active crops, crop condition, and irrigation system efficiency. The withdrawal equation was modified from "Water withdrawals for irrigation, municipal, mining, thermoelectric-power, and drainage uses in Arizona outside of active management areas, 1991-2000" (Tadayon, 2005) to account for variations in water application.

Data are available as a shapefile for visualization or as a stand-alone csv table for attributes only.


Doorenbos, J. and Pruitt, W.O.,1975, Guidelines for predicting crop water requirements: Irrigation and drainage paper FAO No. 24, p195, https://www.nrc.gov/docs/ML1821/ML18215A282.pdf.

Tadayon, Saeid, 2005, Water withdrawals for irrigation, municipal, mining, thermoelectric-power, and drainage uses in Arizona outside of Active Management Areas, 1991–2000: U.S. Geological Survey Scientific Investigations Report 2004-5293, 28 p, https://doi.org/10.3133/sir20045293.

U.S. Bureau of Reclamation, 1992, Plan of study and methods manual for Colorado River system consumptive uses and losses report 1985–1990: U.S. Bureau of Reclamation, Appendix A, 23 p.
DOI: 10.25625/maq7nx/zciigq
title: camera_image_0363.png

description: :unav
DOI: 10.3535/heq-lck-cvn
title: Grewia trichocarpa Hochst. ex A. Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ng2-mrr-4fc
title: Grewia trichocarpa Hochst. ex A. Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/xpeyjq
title: camera_image_0371.png

description: :unav
DOI: 10.3535/wf8-zmj-19q
title: Commicarpus boissieri (Heimerl) Cufod.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/fxvzkd
title: camera_image_0370.png

description: :unav
DOI: 10.3535/jwf-pj8-y9h
title: Dendrosenecio kilimanjari subsp. cottonii (Hutch. & G. Taylor) E. B. Knox

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/p8z-rmn-ddx
title: Thymus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.5281/zenodo.16617801
title: Regional definitions for HTAP3 Fires multi-model project: file on original emissions grid

description: This NetCDF file contains the definitions of the 8 source regions used for the HTAP3-Fires multi-model emission perturbation experiments. The mask file is at 0.1 deg resolution and on the same grid at the GFAS4HTAP biomass burning emissions. There is one variable per source region, with values of 1 where the region is defined, and 0 elsewhere. The regions are based on merged GFED regional definitions (e.g., https://www.globalfiredata.org/data.html), and chosen based on this publication: https://gmd.copernicus.org/articles/18/3265/2025/
DOI: 10.5281/zenodo.16617802
title: Regional definitions for HTAP3 Fires multi-model project: file on original emissions grid

description: This NetCDF file contains the definitions of the 8 source regions used for the HTAP3-Fires multi-model emission perturbation experiments. The mask file is at 0.1 deg resolution and on the same grid at the GFAS4HTAP biomass burning emissions. There is one variable per source region, with values of 1 where the region is defined, and 0 elsewhere. The regions are based on merged GFED regional definitions (e.g., https://www.globalfiredata.org/data.html), and chosen based on this publication: https://gmd.copernicus.org/articles/18/3265/2025/
DOI: 10.25625/maq7nx/ocnzpk
title: camera_image_0349.png

description: :unav
DOI: 10.3535/3a1-p80-wks
title: Echinops L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/fnl-407-9ta
title: Echinops yemenicus Kit Tan

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/ncqvjp
title: camera_image_0369.png

description: :unav
DOI: 10.3535/j17-bbx-ffd
title: Euryops pectinatus (L.) Cass.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/sda-vkz-4ab
title: Helichrysum Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/ezxxhn
title: camera_image_0364.png

description: :unav
DOI: 10.3535/g2k-rfy-zw1
title: Myrsine africana L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/0xsofn
title: camera_image_0361.png

description: :unav
DOI: 10.3535/0a2-mll-q6w
title: Leptospermum scoparium Forst.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/evb-1nn-085
title: Macledium canum (Balf. fil.) S. Ortiz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/x4exh0
title: camera_image_0365.png

description: :unav
DOI: 10.3535/b39-yd0-20e
title: Anchusa undulata L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/y7b-kw7-k0y
title: Helianthemum Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/mnxtbw
title: camera_image_0346.png

description: :unav
DOI: 10.3535/avn-xrr-gtm
title: Juncus socotranus (Buchenau) Snogerup

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dc8-706-1ep
title: Scorzoneroides carpetana subsp. duboisii (Sennen) Gallego

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/zc2-k3s-dlf
title: Juncus inflexus L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/nzav7k
title: camera_image_0345.png

description: :unav
DOI: 10.3535/zgn-dr1-p8y
title: Matthiola perennis Conti

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/k4rjia
title: camera_image_0366.png

description: :unav
DOI: 10.3535/a5d-bz7-nam
title: Saxifraga canaliculata Boiss. & Reut. ex Engl.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/kl0-qky-dnv
title: Gratiola L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.gzvbja
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Derris malaccensis",
 "Country is Cook Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074971-250717081556266/datasets/export for details.
DOI: 10.25625/maq7nx/dfpkbl
title: camera_image_0367.png

description: :unav
DOI: 10.3535/jbw-sm4-c37
title: Anchusa azurea Mill.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/m6z-xvq-jsh
title: Juncus bufonius L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/87iaqw
title: camera_image_0352.png

description: :unav
DOI: 10.3535/6s2-eqa-02z
title: Anthericum liliago L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/slt-6vs-m85
title: Ranunculus acris subsp. friesianus (Jord.) Syme

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/hjoc5e
title: camera_image_0406.png

description: :unav
DOI: 10.3535/3w2-pg0-a7s
title: Centaurea urvillei subsp. urvillei

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/ptj-6da-89h
title: Grewia turbinata Balf. fil.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/lprujy
title: camera_image_0414.png

description: :unav
DOI: 10.3535/711-95g-kaa
title: Centaurea drabifolia subsp. cappadocica (DC.) Wagenitz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/s48-rlh-v5m
title: Centaurea ensiformis P. H. Davis

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/bbnsfc
title: camera_image_0416.png

description: :unav
DOI: 10.3535/3ks-pxb-37v
title: Cyperus bulbosus Vahl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/f4j-8kl-ks9
title: Grewia trichocarpa Hochst. ex A. Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.3ux4xu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Derris malaccensis",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074972-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25625/maq7nx/jtyolw
title: camera_image_0402.png

description: :unav
DOI: 10.3535/jay-dvq-jj3
title: Grewia trichocarpa Hochst. ex A. Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/vkv-86h-ahj
title: Gymnadenia miniata (Crantz) Hayek

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/aoexpa
title: camera_image_0411.png

description: :unav
DOI: 10.3535/7yv-5w2-b00
title: Habenaria myodes Summerh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/i4srlb
title: camera_image_0415.png

description: :unav
DOI: 10.3535/pgw-tcv-rgr
title: Polypogon Desf.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/y1f-0cb-3qj
title: Ornithogalum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/8vjthz
title: camera_image_0398.png

description: :unav
DOI: 10.3535/4gh-kvr-wwq
title: Amaranthus graecizans subsp. silvestris (Vill.) Brenan

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/dj8-5sm-avk
title: Cynanchum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/o7fisg
title: camera_image_0408.png

description: :unav
DOI: 10.3535/b1t-x38-5z3
title: Cynanchum varians (Stocks) Liede & Khanum

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/vnyh7u
title: camera_image_0413.png

description: :unav
DOI: 10.3535/1kc-dvb-y82
title: Convolvulus libanoticus Boiss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/x3s-03e-ybk
title: Convolvulus glomeratus Hochst. ex Choisy

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/pmzqvf
title: camera_image_0399.png

description: :unav
DOI: 10.3535/n0x-h27-dkx
title: Metrosideros excelsa Sol. ex Gaertn.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/tk5-tjl-wtp
title: Centaurea pestalozzae Boiss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/k99txh
title: camera_image_0412.png

description: :unav
DOI: 10.3535/0mg-t1w-scj
title: Centaurea pseudosinaica var. niebuhrii Wagenitz

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/86z-w4z-2tn
title: Grewia tembensis Fresen.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/1vztrn
title: camera_image_0407.png

description: :unav
DOI: 10.3535/2pq-fk5-ksj
title: Breonadia salicina (Vahl) Hepper & J.R.I.Wood

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/rxf-tb7-stt
title: Grewia trichocarpa Hochst. ex A. Rich.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/j49pbo
title: camera_image_0397.png

description: :unav
DOI: 10.3535/hzy-hjp-5x6
title: Plocama jolana (Thulin) M.Backlund & Thulin

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/nm4-kd1-x55
title: Balanites aegyptiaca (L.) Delile

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/whaenn
title: camera_image_0405.png

description: :unav
DOI: 10.3535/8wp-xh1-7zm
title: Balanites aegyptiaca (L.) Delile

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/pnk-2dz-1y5
title: Balanites aegyptiaca (L.) Delile

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/4sa-16l-qfr
title: Convolvulus glomeratus Hochst. ex Choisy

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/0thjd0
title: camera_image_0401.png

description: :unav
DOI: 10.3535/dv4-60t-brz
title: Cyperus bulbosus Vahl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wh6-0l2-7aw
title: Carex deasyi (C.B.Clarke) O.Yano & S.R.Zhang

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/bu8uez
title: camera_image_0400.png

description: :unav
DOI: 10.25625/maq7nx/iwyslg
title: camera_image_0409.png

description: :unav
DOI: 10.3535/945-kah-s7v
title: Sterculia africana (Lour.) Fiori

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/wkr-mvn-b94
title: Fagonia socotrana var. luntii (Baker) Hadidi

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/aih7zx
title: camera_image_0410.png

description: :unav
DOI: 10.3535/5sz-k3v-09b
title: Cyperaceae

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/6xc-265-bd0
title: Puccinellia intermedia (Schur) Janch.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/1wwjiw
title: camera_image_0404.png

description: :unav
DOI: 10.3535/nz5-gq3-91f
title: Carissa spinarum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/h7kk3z
title: camera_image_0403.png

description: :unav
DOI: 10.3535/h09-z1k-7ns
title: Carduncellus caeruleus (L.) C. Presl

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/spe-swm-jq7
title: Ophrys sphegodes subsp. spruneri (Nyman) E.Nelson

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/mcgbah
title: camera_image_0452.png

description: :unav
DOI: 10.3535/c30-2r9-lrs
title: Chlorophytum comosum (Thunb.) Jacques

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/szs-szy-cvw
title: Calystegia R. Br.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/cd9uq3
title: camera_image_0448.png

description: :unav
DOI: 10.3535/7fx-c8d-r5b
title: Cionura erecta (L.) Griseb.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/j7c-wth-8ah
title: Equisetum telmateia Ehrh.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/9ogi5m
title: camera_image_0453.png

description: :unav
DOI: 10.3535/5k6-b9s-mxq
title: Atriplex L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/8mh-zcz-qms
title: Cirsium brachycephalum Jur.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/pn4t9k
title: camera_image_0455.png

description: :unav
DOI: 10.3535/0bz-xq4-26d
title: Nerium oleander L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/lja-yv4-eas
title: Euphorbia cactus Ehrenb. ex Boiss.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/70thvc
title: camera_image_0444.png

description: :unav
DOI: 10.3535/bb7-8m6-xpv
title: Erysimum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/chb-2ql-xj1
title: Plantago L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/1gldee
title: camera_image_0443.png

description: :unav
DOI: 10.3535/2zd-fmd-jd9
title: Populus tremula L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/9hr-2qx-97j
title: Trisetum flavescens (L.) P.Beauv.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/dqxlxh
title: camera_image_0442.png

description: :unav
DOI: 10.3535/ddm-s5e-mla
title: Potentilla L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/n48-xer-06c
title: Cirsium oleraceum (L.) Scop.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/2qsdhl
title: camera_image_0447.png

description: :unav
DOI: 10.3535/vdb-ptl-y0m
title: Betonica macrantha K.Koch

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/vzccu6
title: camera_image_0450.png

description: :unav
DOI: 10.3535/alr-ret-ffq
title: Stachys balansae Boiss. & Kotschy

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/c3w-zwh-dlc
title: Loranthella deflersii (Tiegh.) S. Blanco & C. E. Wetzel

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.25625/maq7nx/jwtt3x
title: camera_image_0445.png

description: :unav
DOI: 10.3535/9bq-wmd-bp8
title: Trifolium glomeratum L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.3535/hpp-p7k-45d
title: Scirpus Tourn. ex L.

description: Digital Specimen for the physical specimen hosted at University of Graz.
DOI: 10.15468/dl.pzgq2c
title: Occurrence Download

description: A dataset containing 3256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vulpes vulpes fulvus"
 ]
}

 The dataset includes 3256 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024439-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/f542f28a-e0c6-4299-abdd-42d388471513
title: Fermiology and superconductivity of topological surface states in PdTe2 (dataset)
DOI: 10.15468/dl.arbfpw
title: Occurrence Download

description: A dataset containing 10611481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erithacus rubecula"
 ]
}

 The dataset includes 10611481 records from 6516 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024395-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22008/fk2/iw73uu/alcfkt
title: THU_L_day.nc

description: Uploaded with pyDataverse 2024-04-11 15:19
DOI: 10.22008/fk2/iw73uu/h3xdiz
title: THU_L_month.nc

description: Uploaded with pyDataverse 2024-04-11 15:19
DOI: 10.22008/fk2/iw73uu/6fkvv1
title: THU_L2_day.csv

description: Uploaded with pyDataverse 2024-04-11 15:19
DOI: 10.22008/fk2/iw73uu/poez4v
title: THU_L2_hour.csv

description: Uploaded with pyDataverse 2024-04-11 15:19
DOI: 10.22008/fk2/iw73uu/laknng
title: THU_L2_month.csv

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/tk3pcu
title: THU_L2_hour.nc

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/vxdbkh
title: THU_L2_day.nc

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/eirg8p
title: THU_L2_month.nc

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/v6phrd
title: THU_U_day.csv

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/bbinja
title: THU_U_hour.csv

description: Uploaded with pyDataverse 2024-04-11 15:20
DOI: 10.22008/fk2/iw73uu/vpzjda
title: THU_U_month.csv

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.22008/fk2/iw73uu/ebmhab
title: THU_U_hour.nc

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.22008/fk2/iw73uu/k7dd2v
title: THU_U_day.nc

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.22008/fk2/iw73uu/yux0vf
title: THU_U_month.nc

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.22008/fk2/iw73uu/sir54m
title: THU_U2_day.csv

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.22008/fk2/iw73uu/5fe9sj
title: THU_U2_hour.csv

description: Uploaded with pyDataverse 2024-04-11 15:21
DOI: 10.5281/zenodo.17741557
title: Supporting Data for: Assessment of Single-Nucleotide Variant Detection Strategies in the Green Sea Turtle (Chelonia mydas) for Conservation Genomics Applications

description: This Zenodo repository contains all processed single-nucleotide variant (SNV) call files, the assembly-derived SNV truth set, and supporting genomic resources generated in the study:

“Assessment of Single-Nucleotide Variant Detection Strategies in the Green Sea Turtle (Chelonia mydas) for Conservation Genomics Applications.”

The dataset includes SNV call sets produced using five variant calling tools DeepVariant, GATK HaplotypeCaller, FreeBayes, VarScan, and BCFtools along with their corresponding TABIX index files. An assembly-derived SNV truth set, generated through minimap2 alignment and bcftools normalization, is provided for benchmarking purposes.

To ensure full reproducibility, the POLCA-corrected ABySS de novo genome assembly used for truth-set construction is also included.

These resources enable complete replication of the SNV benchmarking analyses and facilitate transparent evaluation of variant detection performance in a non-model marine vertebrate species.

📦 Repository Contents





SNV VCF files (DeepVariant, GATK, FreeBayes, VarScan, BCFtools)




TABIX index files (.tbi)




Assembly-derived SNV truth set (minimap2-aligned and bcftools-normalized VCF)




POLCA-corrected ABySS de novo assembly (FASTA format)
DOI: 10.22008/fk2/iw73uu/a5ggig
title: THU_U2_month.csv

description: Uploaded with pyDataverse 2024-04-11 15:22