cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7125077.v1
title: Taxonomy and phylogeny of <i>Macrolepiota</i>: two new species from Brazil

description: <i>Macrolepiota</i> is a poorly known genus in the Neotropics. In order to increase knowledge about this group, we collected specimens from the Atlantic Forest in southern and northeastern Brazil. <i>Macrolepiota cyanolamellata</i> and <i>M. sabulosa</i> from subtropical and tropical regions, respectively, are proposed as new species. We performed molecular phylogenetic analyses of the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2 (ITS) and the combined data set ITS + nuclear large subunit rDNA (28S) + RNA polymerase II second largest (<i>RPB2</i>), as well as morphological analyses. Two lineages with unique morphotypes were found. The species proposed were strongly supported as the sister lineage closely related to <i>M. clelandii</i> and <i>M. subcitrophylla</i>. Detailed descriptions and illustrations of their macro- and microscopic characters are provided.
DOI: 10.6084/m9.figshare.7125014
title: species phylogeny 2

description: species phylogeny - without outgroup
DOI: 10.6084/m9.figshare.7125014.v1
title: species phylogeny 2

description: species phylogeny - without outgroup
DOI: 10.6084/m9.figshare.7125065.v1
title: Biological data

description: <b>Diameter of inhibition of bacterial growth in millimeters and </b><b>Mass in grams of the compounds used to test the bactericidal activity</b><b><br></b><br>
DOI: 10.6084/m9.figshare.7125005
title: protein coding gene alignment

description: mitochondrial protein coding genes Epichloe
DOI: 10.6084/m9.figshare.7125008
title: species phylogeny

description: species phylogeny _ with outgroups
DOI: 10.6084/m9.figshare.7125005.v1
title: protein coding gene alignment

description: mitochondrial protein coding genes Epichloe
DOI: 10.21954/ou.rd.7124960
title: Neither sacred nor profane: the permitted content of civil marriage ceremonies

description: The data are contained in two Excel spreadsheets, with all identifying data removed, and a non-alphabetical coding system used.One spreadsheet shows the results of a survey of couples who had married in an English civil marriage ceremony between January 2015 and September 2017, or who had formally given notice of their intention to marry in such a ceremony.The other spreadsheet shows the results of a survey of registration officers who conduct civil marriage ceremonies. The researchers are aware that some of the responses in a few questionnaires were nonsensical; these have been retained to preserve the integrity of the dataset.The article based on the data will be available online from November 2018.<br>
DOI: 10.6084/m9.figshare.7124465
title: Normative data for SCAT2 in healthy adults

description: This dataset includes information of a pilot normative study for the Sport Concussion Assessment Tool (SCAT2), in a cohort of 60 healthy community volunteers who had not sustained a head injury. Age, sex and general distress, anxiety and depressive symptoms (as measured by the Hospital Anxiety and Depression Scale -HADS) are included. All data is anonymized.The dataset is linked to a wider study focused on mTBI outcome, which was reviewed and approved by the Ethics Committee of our Institution, Vall d´Hebron Research Institute, Barcelona, Spain. (PR-AG-47-2013). All participants signed a written informed consent.
DOI: 10.6084/m9.figshare.7123598
title: Application of an Mn-MOF as a highly efficient catalyst for sunlight-driven hydrogen generation

description: Microscale crystals of a 2D layered Mn-MOF [Mn<sub>2</sub>(TylP)<sub>4</sub>]<i><sub>n</sub></i> (TylP=5-(1,2,4-triazol-1-yl)isophthalic) with a thiolate-bridged binuclear Mn(II) node similar to the active site of the [MnAu]-hydrogenase were prepared. This material shows high catalytic activity for visible-light-driven hydrogen production under the illumination of white LED or direct sunlight. The turn-over frequency of the catalyst can reach up to 6 h<sup>−1</sup>. In this study, the heterogeneous nature and recyclability of the catalyst, as well as the factors that affect the catalytic activity have been investigated and described. Moreover, the photocatalytic mechanism for the hydrogen generation of [Mn<sub>2</sub>(TylP)<sub>4</sub>]<i><sub>n</sub></i> has also been proposed, based on fluorescence spectra and cyclic voltammetry.
DOI: 10.6084/m9.figshare.7124465.v1
title: Normative data for SCAT2 in healthy adults

description: This dataset includes information of a pilot normative study for the Sport Concussion Assessment Tool (SCAT2), in a cohort of 60 healthy community volunteers who had not sustained a head injury. Age, sex and general distress, anxiety and depressive symptoms (as measured by the Hospital Anxiety and Depression Scale -HADS) are included. All data is anonymized.The dataset is linked to a wider study focused on mTBI outcome, which was reviewed and approved by the Ethics Committee of our Institution, Vall d´Hebron Research Institute, Barcelona, Spain. (PR-AG-47-2013). All participants signed a written informed consent.
DOI: 10.6084/m9.figshare.7123598.v2
title: Application of an Mn-MOF as a highly efficient catalyst for sunlight-driven hydrogen generation

description: Microscale crystals of a 2D layered Mn-MOF [Mn<sub>2</sub>(TylP)<sub>4</sub>]<i><sub>n</sub></i> (TylP=5-(1,2,4-triazol-1-yl)isophthalic) with a thiolate-bridged binuclear Mn(II) node similar to the active site of the [MnAu]-hydrogenase were prepared. This material shows high catalytic activity for visible-light-driven hydrogen production under the illumination of white LED or direct sunlight. The turn-over frequency of the catalyst can reach up to 6 h<sup>−1</sup>. In this study, the heterogeneous nature and recyclability of the catalyst, as well as the factors that affect the catalytic activity have been investigated and described. Moreover, the photocatalytic mechanism for the hydrogen generation of [Mn<sub>2</sub>(TylP)<sub>4</sub>]<i><sub>n</sub></i> has also been proposed, based on fluorescence spectra and cyclic voltammetry.
DOI: 10.6084/m9.figshare.7123256
title: Governance arrangements targeting diversity in Europe: how New Public Management impacts working with social cohesion

description: This article analyses how policies to foster social cohesion within diverse and unequal urban contexts are affected by New Public Management and austerity policies. Based on the analysis of a handful of governance arrangements in three cities that differ in their institutional structure and diversity policy approaches (Copenhagen, Leipzig and Milan), it is shown that negative effects are quite widespread yet cushioned by a strong welfare state structure, solid local government and high priority given to the recognition of diversity. Nevertheless, the shift towards the application of market logic to social work reduces innovative potential, increases efforts spent on procedures and weakens public coordination.
DOI: 10.6084/m9.figshare.7123256.v2
title: Governance arrangements targeting diversity in Europe: how New Public Management impacts working with social cohesion

description: This article analyses how policies to foster social cohesion within diverse and unequal urban contexts are affected by New Public Management and austerity policies. Based on the analysis of a handful of governance arrangements in three cities that differ in their institutional structure and diversity policy approaches (Copenhagen, Leipzig and Milan), it is shown that negative effects are quite widespread yet cushioned by a strong welfare state structure, solid local government and high priority given to the recognition of diversity. Nevertheless, the shift towards the application of market logic to social work reduces innovative potential, increases efforts spent on procedures and weakens public coordination.
DOI: 10.6084/m9.figshare.7123241
title: Temporal & Spatial Discounting

description: Data set from Robinson, et al.<br>Temporal and Spatial Discounting are distinct in Humans
DOI: 10.6084/m9.figshare.7123256.v1
title: Governance arrangements targeting diversity in Europe: how New Public Management impacts working with social cohesion

description: This article analyses how policies to foster social cohesion within diverse and unequal urban contexts are affected by New Public Management and austerity policies. Based on the analysis of a handful of governance arrangements in three cities that differ in their institutional structure and diversity policy approaches (Copenhagen, Leipzig and Milan), it is shown that negative effects are quite widespread yet cushioned by a strong welfare state structure, solid local government and high priority given to the recognition of diversity. Nevertheless, the shift towards the application of market logic to social work reduces innovative potential, increases efforts spent on procedures and weakens public coordination.
DOI: 10.6084/m9.figshare.7123217
title: Identification of active proteases in CVF

description: Identfication of active proteases in cervical-vaginal fluid dataset.
DOI: 10.6084/m9.figshare.7123217.v1
title: Identification of active proteases in CVF

description: Identfication of active proteases in cervical-vaginal fluid dataset.
DOI: 10.6084/m9.figshare.7123172
title: RG-Survey Results.xlsx

description: Results of the survey regarding ResearchGate<br>
DOI: 10.6084/m9.figshare.7123172.v1
title: RG-Survey Results.xlsx

description: Results of the survey regarding ResearchGate<br>
DOI: 10.6084/m9.figshare.7123061.v1
title: Machine Learning code

description: Script of Machine Learning experiment. For benchmark experiment it was used bmr R package. In addition, Feature Selection techniques were carried out. <br>It is about a supervised binary classification problem.
DOI: 10.6084/m9.figshare.7122977
title: Data associated with "Applying genotyping-by-sequencing data to uncover copy number variation: a proof of concept using a soybean fast neutron mutant population "

description: These data represent read counts in different genomic windows obtained from genotyping-by-sequencing of a set of soybean fast neutron mutants and four controls. A manuscript related to these data has been submitted for publication. Array comparative genomic hybridization data and raw sequence reads are available through NCBI BioProject number PRJNA486165. A package has been developed to analyze these data and is available on GitHub (github.com/malemay/delgbs).<br>The abstract and reference of the article will be added here once the manuscript is accepted for publication.
DOI: 10.6084/m9.figshare.7122977.v1
title: Data associated with "Applying genotyping-by-sequencing data to uncover copy number variation: a proof of concept using a soybean fast neutron mutant population "

description: These data represent read counts in different genomic windows obtained from genotyping-by-sequencing of a set of soybean fast neutron mutants and four controls. A manuscript related to these data has been submitted for publication. Array comparative genomic hybridization data and raw sequence reads are available through NCBI BioProject number PRJNA486165. A package has been developed to analyze these data and is available on GitHub (github.com/malemay/delgbs).<br>The abstract and reference of the article will be added here once the manuscript is accepted for publication.
DOI: 10.6084/m9.figshare.7122911
title: Supplementary Material for: The Relationship between Cytokines and Verbal Memory in Individuals with Schizophrenia and Their Unaffected Siblings

description: <b><i>Background:</i></b> Verbal memory impairment may be considered an endophenotype in schizophrenia (SZ), also affecting the siblings of SZ subjects. Furthermore, the immune-inflammatory system response has an important modulatory effect on brain processes, especially on memory circuits. <b><i>Objective:</i></b> Investigating the relationship between TNF-α and IL-6 and memory performance in patients with SZ, their unaffected siblings (SB) and healthy controls (HC). <b><i>Methods:</i></b> 35 subjects with SZ, 36 SB, and 47 HC underwent a neurocognitive assessment for verbal memory by means of the revised Hopkins Verbal Learning Test (HVLT-R) in addition to serum cytokines analyses. <b><i>Results:</i></b> SZ patients performed worse in HVLT-R than SB and HC, but SB and HC were not different. Regarding the biomarker levels, we found significant results of TNF-α for both groups. However, we did not find differences between groups after multiple-comparisons analysis. There were no significant correlations between episodic verbal memory, TNF-α, and IL-6. <b><i>Conclusion:</i></b> The results are compatible with the hypothesis that deficits in verbal memory of individuals with SZ could be secondary to inadequate functioning of cognitive processing areas, such as proactive cognitive control.
DOI: 10.6084/m9.figshare.11932743.v4
title: TNBDroid Test APK

description: Open-source apps from F-droid used for the evaluation of the tool TNBDroid. We only use the apps for research.<br>Commercial apps from google play used for the evaluation of the tool TNBDroid. We only use the apps for research.<br>
DOI: 10.6084/m9.figshare.7122788
title: Results of the paper 'Sampling uncertainty versus method uncertainty'

description: Results of the paper 'Sampling uncertainty versus method uncertainty: a general framework with applications to omics biomarker selection'
DOI: 10.6084/m9.figshare.7122812
title: WET Error Rates for TST & NOEC Supporting Information

description: Supporting information, data, R scripts & R functions for manuscript titled "Comparison of false positive rates of 2 hypothesis-test approaches in relation to laboratory toxicity test performance". Compares decision error rates for TST and NOEC approaches applied to Ceriodaphnia chronic WET test sublethal endpoint ("reproduction") in relation to number of replicates and coefficient of variation for endpoint (number of neonates, aka 'reproduction'). Uses both resampling and simulation to evaluate error rates. <br>File types: csv, txt, R (text, R functions), RData (binary) <br>
DOI: 10.6084/m9.figshare.7122788.v1
title: Results of the paper 'Sampling uncertainty versus method uncertainty'

description: Results of the paper 'Sampling uncertainty versus method uncertainty: a general framework with applications to omics biomarker selection'
DOI: 10.6084/m9.figshare.7122812.v1
title: WET Error Rates for TST & NOEC Supporting Information

description: Supporting information, data, R scripts & R functions for manuscript titled "Comparison of false positive rates of two hypothesis-test approaches in relation to laboratory toxicity test performance". Compares decision error rates for TST and NOEC approaches applied to Ceriodaphnia chronic WET test sublethal endpoint ("reproduction") in relation to number of replicates and coefficient of variation for endpoint (number of neonates, aka 'reproduction'). Uses both resampling and simulation to evaluate error rates. <br>File types: csv, txt, R (text, R functions), RData (binary) <br>
DOI: 10.6084/m9.figshare.7122812.v2
title: WET Error Rates for TST & NOEC Supporting Information

description: Supporting information, data, R scripts & R functions for manuscript titled "Comparison of false positive rates of 2 hypothesis-test approaches in relation to laboratory toxicity test performance". Compares decision error rates for TST and NOEC approaches applied to Ceriodaphnia chronic WET test sublethal endpoint ("reproduction") in relation to number of replicates and coefficient of variation for endpoint (number of neonates, aka 'reproduction'). Uses both resampling and simulation to evaluate error rates. <br>File types: csv, txt, R (text, R functions), RData (binary) <br>
DOI: 10.6084/m9.figshare.7122812.v4
title: WET Error Rates for TST & NOEC Supporting Information

description: Supporting information, data, R scripts & R functions for manuscript titled "Comparison of false positive rates of 2 hypothesis-test approaches in relation to laboratory toxicity test performance". Compares decision error rates for TST and NOEC approaches applied to Ceriodaphnia chronic WET test sublethal endpoint ("reproduction") in relation to number of replicates and coefficient of variation for endpoint (number of neonates, aka 'reproduction'). Uses both resampling and simulation to evaluate error rates. <br>File types: csv, txt, R (text, R functions), RData (binary) <br>
DOI: 10.6084/m9.figshare.7122812.v3
title: WET Error Rates for TST & NOEC Supporting Information

description: Supporting information, data, R scripts & R functions for manuscript titled "Comparison of false positive rates of 2 hypothesis-test approaches in relation to laboratory toxicity test performance". Compares decision error rates for TST and NOEC approaches applied to Ceriodaphnia chronic WET test sublethal endpoint ("reproduction") in relation to number of replicates and coefficient of variation for endpoint (number of neonates, aka 'reproduction'). Uses both resampling and simulation to evaluate error rates. <br>File types: csv, txt, R (text, R functions), RData (binary) <br>
DOI: 10.6084/m9.figshare.7122572
title: Data from: The effect of network size and sampling completeness in depauperate networks

description: The data consists of gall wasps and natural enemies emerged from galls sampled across thirteen subwebs.Full detail is given i Henriksen, M.V., Chapple, D.G., Chown, S.L., & McGeoch, M.A. (2018): "The effect of network size and sampling completeness in depauperate networks". <i>Journal of Animal Ecology</i>, https://doi.org/10.1111/1365-2656.12912
DOI: 10.6084/m9.figshare.7122572.v1
title: Data from: The effect of network size and sampling completeness in depauperate networks

description: The data consists of interactions between gall wasps and natural enemies observed in individual samples across thirteen subwebs.Full detail is given i Henriksen, M.V., Chapple, D.G., Chown, S.L., & McGeoch, M.A. (in review): "The effect of network size and sampling completeness in depauperate networks"
DOI: 10.6084/m9.figshare.7122554
title: Group I introns alignment and phylogeny

description: This folder included the alignment and phygeny of 593 Group I intron
DOI: 10.6084/m9.figshare.7122551
title: intron alignment.meg

description: Group I intron alignmentGroup I intron phylogeny
DOI: 10.6084/m9.figshare.7122554.v1
title: Group I introns alignment and phylogeny

description: This folder included the alignment and phygeny of 593 Group I intron
DOI: 10.6084/m9.figshare.7122551.v1
title: intron alignment.meg

description: Group I intron alignmentGroup I intron phylogeny
DOI: 10.6084/m9.figshare.7122545
title: Springer Compact Evaluation - Researcher attitudes questionnaire on Springer Compact, Open Access publishing, and Open Access financing

description: Researcher attitudes questionnaire on Springer Compact.<br>This questionnaire was used to evaluate researcher attitudes towards Open Access, Open Access publishing, Open Access financing, and in particular Open Access publishing with Springer Compact in Sweden. <br>Adiminstrative staff at Swedish institutions were asked to distribute the survey to authors at their institutions via e-mail. The survey was accessed online as a google survey and open for authors who published within SC between 1 January 2017 and June 2018. The survey closed 28 June 2018. Within this time frame 2071 articles were published. The response rate was 18%.<br>Full report: http://openaccess.blogg.kb.se/files/2018/02/Evaluation_of_offset_agreements_SC_Report_3.pdf
DOI: 10.6084/m9.figshare.7122545.v1
title: Springer Compact Evaluation - Researcher attitudes questionnaire on Springer Compact, Open Access publishing, and Open Access financing

description: Researcher attitudes questionnaire on Springer Compact.<br>This questionnaire was used to evaluate researcher attitudes towards Open Access, Open Access publishing, Open Access financing, and in particular Open Access publishing with Springer Compact in Sweden. <br>Adiminstrative staff at Swedish institutions were asked to distribute the survey to authors at their institutions via e-mail. The survey was accessed online as a google survey and open for authors who published within SC between 1 January 2017 and June 2018. The survey closed 28 June 2018. Within this time frame 2071 articles were published. The response rate was 18%.<br>Full report: http://openaccess.blogg.kb.se/files/2018/02/Evaluation_of_offset_agreements_SC_Report_3.pdf
DOI: 10.6084/m9.figshare.7122545.v3
title: Springer Compact Evaluation - Researcher attitudes questionnaire on Springer Compact, Open Access publishing, and Open Access financing

description: Researcher attitudes questionnaire on Springer Compact.<br>This questionnaire was used to evaluate researcher attitudes towards Open Access, Open Access publishing, Open Access financing, and in particular Open Access publishing with Springer Compact in Sweden. <br>Adiminstrative staff at Swedish institutions were asked to distribute the survey to authors at their institutions via e-mail. The survey was accessed online as a google survey and open for authors who published within SC between 1 January 2017 and June 2018. The survey closed 28 June 2018. Within this time frame 2071 articles were published. The response rate was 18%.<br>Full report: http://openaccess.blogg.kb.se/files/2018/02/Evaluation_of_offset_agreements_SC_Report_3.pdf
DOI: 10.6084/m9.figshare.7122545.v2
title: Springer Compact Evaluation - Researcher attitudes questionnaire on Springer Compact, Open Access publishing, and Open Access financing

description: Researcher attitudes questionnaire on Springer Compact.<br>This questionnaire was used to evaluate researcher attitudes towards Open Access, Open Access publishing, Open Access financing, and in particular Open Access publishing with Springer Compact in Sweden. <br>Adiminstrative staff at Swedish institutions were asked to distribute the survey to authors at their institutions via e-mail. The survey was accessed online as a google survey and open for authors who published within SC between 1 January 2017 and June 2018. The survey closed 28 June 2018. Within this time frame 2071 articles were published. The response rate was 18%.<br>Full report: http://openaccess.blogg.kb.se/files/2018/02/Evaluation_of_offset_agreements_SC_Report_3.pdf
DOI: 10.6084/m9.figshare.7122518
title: 3076个词根词缀(均有例词).xls

description: Use this form to edit all information related to your data. Please be as descriptive as possible. The file upload is independent from the rest of the form, so you don't need to save an upload. This message will be replaced with helpful tips and suggestions as you begin interacting with the form.
DOI: 10.6084/m9.figshare.7122506.v2
title: JMB_THG_TD2018_Supplementary_Material

description: Supplemental material for CP article: <br><br>Bouchal, J.M., Güner, T.H., Denk, T. 2018. Middle Miocene climate of southwestern Anatolia from multiple botanical proxies. Climates of the Past. https://doi.org/10.5194/cp-2018-76 <br> <b>S1</b>: A. Number of fossil-taxa (macrofossils and microfossils) from four middle Miocene localities (including one macrofossil horizon and four pollen zones - PZ) in the Yatağan Basin. B. All fossil-taxa recorded from four Yatağan Basin floras (14.8–13.2 Ma; MN6 into MN7–8). <b>S2</b>: Köppen-Geiger climate type signatures of all genera represented in micro and macrofloras of the Yatağan Basin. <b>S3</b>: Coding of leaf physiognomic characters for morphotypes from three macrofloras. Output pdf files from online CLAMP analysis (http://clamp.ibcas.ac.cn). <b>S4</b>: Heat maps showing precise representation of different Köppen-Geiger climate types for all fossil assemblages. <b>S5</b>: Köppen signature diagrams excluding cosmopolitan and gymnospermous taxa. <b>S6</b>: Arboreal to non-arboreal pollen ratios for three sections, of the Yatağan Basin. <b>S7</b>: Modern climate stations comparable to the middle Miocene climate of the Yatağan Basin, southwestern Anatolia. Climate data from Climate-Data.Org (https://sv.climate-data.org/info/sources/) and Ustaoğlu (2012). Selected Walter-Lieth climate diagrams illustrate qualitative difference between Euxinian-Hyrcanian and Japanese (Honshu) <i>Cf</i> climates. <br>