cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12202853
title: Feasibility and Accuracy of Rapid On-Site Evaluation of Touch Imprint Cytology During Transbronchial Biopsy : Data sharing

description: This study is a single-center retrospective chart review of patients who underwent bronchoscopy combined with rapid on site evaluation at the Chiba University Hospital. The data show the patient's age, sex, lesion characteristics, the results of rapid on site evaluation, pathology results, final diagnosis, and gene mutation results. All analyses were performed in accordance with the amended Declaration of Helsinki. Written informed consent for bronchoscopy was obtained from each patient. Because data anonymization and privacy issues were protected and the approval for the opt-out consent method were given by the Chiba University Hospital (approval number 2584), additional informed consent for this research was waived due to the design of retrospective chart review of clinical history and diagnostic results.<br>
DOI: 10.6084/m9.figshare.12202586
title: Is there a hidden blood loss in orthognathic surgery?

description: Source data to the study 'Is there hidden blood loss in orthognathic surgery and should it be considered? A prospective cohort study.'
DOI: 10.6084/m9.figshare.12202418
title: Maternal Care

description: Data for high and low altitude maternal adaptation study in <i>Peromyscus maniculatus</i>
DOI: 10.6084/m9.figshare.12201809
title: Hybridization and introgression between Helicoverpa zea and H. armigera: an adaptational bridge

description: The invasion of organisms into new ecosystems is an increasingly common phenomenon due to the movement of commodities in global trade. One of the most complex scenarios post-invasion is when the invasive species resembles a native pest; even more so when they can hybridize and produce fertile progeny. The global pest <i>Helicoverpa armigera</i> had been detected in Brazil in 2013 and generated a wave of speculations about the possibility of hybridization with the native sister taxa <i>Helicoverpa zea</i>. In the present study, we used genome-wide SNPs genotyped in field-collected individuals to investigate hybridization between <i>H. armigera</i> and <i>H. zea</i> in different Brazilian agricultural landscapes. The results indicated that the frequency of hybridization varied from 15 to 30% depending on methods used. Mix ancestry between <i>H. zea</i> and <i>H. armigera</i> in hybrids (introgression) was around 10% in all tested methods. Hybridization also varied considerably depending on the geographic locations where the sample was collected, forming a ‘mosaic’ hybrid zone where introgression may be facilitated by environmental and landscape variables. Both landscape composition and bioclimatic variables point to the presence of maize and soybean as the main factors explaining the high percentage of introgression in agriculture landscapes. In addition, the impact of multiple <i>H. armigera</i> incursions is reflected in the structured and inbred pattern genetic diversity. Our data show that the landscape composition and bioclimatic variables influence in the introgression rate between <i>H. armigera</i> and <i>H. zea</i> in agricultural areas. The continuous monitoring of the hybridization process in the agricultural fields is necessary since agricultural expansion, climatic fluctuations, a changing composition of crop species and varieties, and dynamic planting seasons are some factors in South America that could promote a sudden alteration in the introgression rate between <i>Helicoverpa</i> spp. Introgression between invasive and native pests also can dramatically impact evolution on host ranges and resistance management.
DOI: 10.6084/m9.figshare.12201092
title: RNAseq summary statistics

description: The phred quality scores for illumina sequencing were generated using Fastqc package. Bowtie2 was used to align the raw reads to the D592 genome and to calculate alignment percentage, FastQC. The reference genome assembly for S. aureus D592 to which the reads were aligned is on NCBI under accession number NZ_CP035791.1.
DOI: 10.6084/m9.figshare.12200906
title: Cost-utility Analysis of Screening for Diabetic Retinopathy in Japan: A Probabilistic Markov Modeling Study

description: <i>Purpose</i>: To evaluate the cost-effectiveness for a screening interval longer than 1 year detecting diabetic retinopathy (DR) through the estimation of incremental costs per quality-adjusted life year (QALY) based on the best available clinical data in Japan. <i>Methods</i>: A Markov model with a probabilistic cohort analysis was framed to calculate incremental costs per QALY gained by implementing a screening program detecting DR in Japan. A 1-year cycle length and population size of 50,000 with a 50-year time horizon (age 40–90 years) was used. Best available clinical data from publications and national surveillance data was used, and a model was designed including current diagnosis and management of DR with corresponding visual outcomes. One-way and probabilistic sensitivity analyses were performed considering uncertainties in the parameters. <i>Results</i>: In the base-case analysis, the strategy with a screening program resulted in an incremental cost of 5,147 Japanese yen (¥; US$64.6) and incremental effectiveness of 0.0054 QALYs per person screened. The incremental cost-effectiveness ratio was ¥944,981 (US$11,857) per QALY. The simulation suggested that screening would result in a significant reduction in blindness in people aged 40 years or over (−16%). Sensitivity analyses suggested that in order to achieve both reductions in blindness and cost-effectiveness in Japan, the screening program should screen those aged 53–84 years, at intervals of 3 years or less. <i>Conclusions</i>: An eye screening program in Japan would be cost-effective in detecting DR and preventing blindness from DR, even allowing for the uncertainties in estimates of costs, utility, and current management of DR.
DOI: 10.21954/ou.rd.12200873
title: Cement and Concrete EPD References

description: List of Environmental Product Declarations (EPD) analysed for cement, aggregates, admixtures and ready mix concretes and described in a paper in review for Buildings and Cities, Embodied carbon of concrete in buildings: Part 1 - Materials<b>Abstract</b> Cement is responsible for 7% of global greenhouse gas emissions, and is predicted to grow with increasing development. The majority is used in concrete, globally the most common material in buildings. Reducing emissions from the use of cement and concrete in buildings is therefore critical in order to limit global warming. However there remain multiple gaps in knowledge about the extent of these emissions. This paper is the first output of a project which aims to better understand the embodied impacts from the use of concrete in buildings, in order to inform and advise policy makers and industry practitioners, and to provide clear evidence for the path forwards. In order to do so it collates, analyses and critiques evidence from multiple sources, reported over three papers. This first paper focuses on the basic data on materials impacts. Over the last few years several hundred individual Environmental Product Declarations (EPD) have been published for cements, aggregates and concrete mixes, but no publication offers a comparison or overview; therefore understanding the range and opportunities for reduction of impacts from concrete remains very limited. Part 1 - Materials provides the first detailed analysis of the EPD for concrete and its constituents.
DOI: 10.21954/ou.rd.12200873.v1
title: Cement and Concrete EPD References

description: List of Environmental Product Declarations (EPD) analysed for cement, aggregates, admixtures and ready mix concretes and described in a paper in review for Buildings and Cities, Embodied carbon of concrete in buildings: Part 1 - Materials
DOI: 10.21954/ou.rd.12200873.v3
title: Cement and Concrete EPD References

description: List of Environmental Product Declarations (EPD) analysed for cement, aggregates, admixtures and ready mix concretes and described in a paper in review for Buildings and Cities, Embodied carbon of concrete in buildings: Part 1 - Materials<b>Abstract</b> Cement is responsible for 7% of global greenhouse gas emissions, and is predicted to grow with increasing development. The majority is used in concrete, globally the most common material in buildings. Reducing emissions from the use of cement and concrete in buildings is therefore critical in order to limit global warming. However there remain multiple gaps in knowledge about the extent of these emissions. This paper is the first output of a project which aims to better understand the embodied impacts from the use of concrete in buildings, in order to inform and advise policy makers and industry practitioners, and to provide clear evidence for the path forwards. In order to do so it collates, analyses and critiques evidence from multiple sources, reported over three papers. This first paper focuses on the basic data on materials impacts. Over the last few years several hundred individual Environmental Product Declarations (EPD) have been published for cements, aggregates and concrete mixes, but no publication offers a comparison or overview; therefore understanding the range and opportunities for reduction of impacts from concrete remains very limited. Part 1 - Materials provides the first detailed analysis of the EPD for concrete and its constituents.
DOI: 10.21954/ou.rd.12200873.v2
title: Cement and Concrete EPD References

description: List of Environmental Product Declarations (EPD) analysed for cement, aggregates, admixtures and ready mix concretes and described in a paper in review for Buildings and Cities, Embodied carbon of concrete in buildings: Part 1 - Materials<b>Abstract</b> Cement is responsible for 7% of global greenhouse gas emissions, and is predicted to grow with increasing development. The majority is used in concrete, globally the most common material in buildings. Reducing emissions from the use of cement and concrete in buildings is therefore critical in order to limit global warming. However there remain multiple gaps in knowledge about the extent of these emissions. This paper is the first output of a project which aims to better understand the embodied impacts from the use of concrete in buildings, in order to inform and advise policy makers and industry practitioners, and to provide clear evidence for the path forwards. In order to do so it collates, analyses and critiques evidence from multiple sources, reported over three papers. This first paper focuses on the basic data on materials impacts. Over the last few years several hundred individual Environmental Product Declarations (EPD) have been published for cements, aggregates and concrete mixes, but no publication offers a comparison or overview; therefore understanding the range and opportunities for reduction of impacts from concrete remains very limited. Part 1 - Materials provides the first detailed analysis of the EPD for concrete and its constituents.
DOI: 10.6084/m9.figshare.12200834
title: Dataset from Experience shapes accuracy in territorial decision-making in a poison frog

description: speaker: R (right), L (left); bodysize: measured in cm; age: 0=first year adults, 1=adults from previous years; year: 2017,2019; attack: Y/N=yes/no; °C: temperature; SPL: Sound pressure level measured at the tested frog (dB); decision.time: latency from beginning of trial until first movement (measured in seconds); approach.speed: measued in meters/second.
DOI: 10.6084/m9.figshare.12200834.v1
title: Dataset from Experience shapes accuracy in territorial decision-making in a poison frog

description: speaker: R (right), L (left); bodysize: measured in cm; age: 0=first year adults, 1=adults from previous years; year: 2017,2019; attack: Y/N=yes/no; °C: temperature; SPL: Sound pressure level measured at the tested frog (dB); decision.time: latency from beginning of trial until first movement (measured in seconds); approach.speed: measued in meters/second.
DOI: 10.6084/m9.figshare.12200681
title: Mass spec data PKA

description: Results global kinase assay PKA
DOI: 10.6084/m9.figshare.12200684
title: Sample of eggs pictures for digital measurement

description: Set of chiquen egg pictures for authomatic measurements.
DOI: 10.6084/m9.figshare.12200675
title: Mass spec data MST2 kinase assay

description: Results global kinase assay MST2
DOI: 10.6084/m9.figshare.12200675.v1
title: Mass spec data MST2 kinase assay

description: Results global kinase assay MST2
DOI: 10.6084/m9.figshare.12200681.v1
title: Mass spec data PKA

description: Results global kinase assay PKA
DOI: 10.6084/m9.figshare.12200597
title: Mass spec data LATS kinase assay

description: Results global kinase assay LATS
DOI: 10.6084/m9.figshare.12200597.v1
title: Mass spec data LATS kinase assay

description: Results global kinase assay LATS
DOI: 10.6084/m9.figshare.12200549
title: SOMFFN LET reconstructions

description: Reconstructions of ocean pCO2 from the Large Ensemble Testbed (LET) using the SOM-FFN
DOI: 10.6084/m9.figshare.12200522
title: Use of Dual RNA-seq for Systems Biology Analysis of Zea mays and Aspergillus flavus interaction

description: <b>Supplemental tables for the manuscript titled “Use of Dual RNA-seq for Systems Biology Analysis of Zea mays and Aspergillus flavus interaction”.</b><b> </b>
DOI: 10.6084/m9.figshare.12200438
title: segmentations of mouse trabeculae

description: Grey scale image stacks (TIFF) of segmented trabecular bone from below the proximal growth plate of both tibiae obtained from 12 female C57BL/J6 mice.<br>All mice underwent sciatic neurectomy to their right hindlimb at 12 weeks of age, to model osteoporosis.<br>Four mice were euthanised and their bones dissected after each of 3 time points: 5,35, and 65 days after the surgery. All tibiae were imaged in X-ray microcomputed tomograph (Skyscan 1172, Bruker microCT, Kontich, Belgium) at 5 µm voxel size and grey scale images were reconstructed using NRecon 1.7.1.0.<br>File names reflect the mouse ID, timepoint of euthanasia and whether the sample is from the left or right hindlimb, so e.g. the file 'mouse-35.3R-segmented-grey-scale' is from the right hindlimb of mouse number 3 of the ones that were taken 35 days post-surgery (so at 12 weeks + 35 days of age).<br>Segmentation was done manually using CTan.<br>Ethical approval for the animal procedures was carried out in accordance with the Animals (Scientific Procedures) Act 1986, an Act of Parliament of the United Kingdom, approved by the Royal Veterinary College Ethical Review Committee and the United Kingdom Government Home Office under specific project license, and followed ARRIVE (Animal Research: Reporting of In Vivo Experiments) guidelines.<br>
DOI: 10.6084/m9.figshare.12200435
title: BasicBeeSurveyData.xlsx

description: These are the raw data from an international survey on honeybees and other pollinators.<br>
DOI: 10.6084/m9.figshare.12200408
title: Supplemental Table 1.xlsx

description: DESeq2 outputs for all the stages of infection (1 to 18).Differentially expressed genes found in Zea mays after using DESeq2.
DOI: 10.6084/m9.figshare.12200408.v1
title: Supplemental Table 1.xlsx

description: DESeq2 outputs for all the stages of infection (1 to 18).Differentially expressed genes found in Zea mays after using DESeq2.
DOI: 10.6084/m9.figshare.12200423
title: Glass Beads from Medieval Gao (Mali): New Analytical Data on Chronology, Sources, and Trade

description: Excavations at several archaeological sites in and around Gao have resulted in the recovery of thousands of glass beads presumed to have been acquired from glass bead-producing centers through trade. The bead assemblages cover the period from the eighth to the fourteenth century CE. Here we report on the results of compositional analysis by LA-ICP-MS of 100 beads, permitting comparison with the growing corpus of chemical analyses for glass from African and Near Eastern sites. In this analysis, several compositional groupings are recognized. These include two types of plant-ash soda-lime-silica glass (v-Na-Ca), a mineral soda-lime-silica glass (m-Na-Ca), a high-lime high-alumina (HLHA) glass, a mineral soda-high alumina (m-Na-Al), glass, a plant ash soda-high alumina (v-Na-Al) glass and a high lead composition glass. The reconstruction and dating of depositional contexts suggests a shift in glass sources at the end of the tenth century CE. The issue of source identification is discussed and occurrences at other African sites are mapped, providing new data towards an understanding of trade and exchange networks.
DOI: 10.6084/m9.figshare.12200423.v1
title: Glass Beads from Medieval Gao (Mali): New Analytical Data on Chronology, Sources, and Trade

description: Excavations at several archaeological sites in and around Gao have resulted in the recovery of thousands of glass beads presumed to have been acquired from glass bead-producing centers through trade. The bead assemblages cover the period from the eighth to the fourteenth century CE. Here we report on the results of compositional analysis by LA-ICP-MS of 100 beads, permitting comparison with the growing corpus of chemical analyses for glass from African and Near Eastern sites. In this analysis, several compositional groupings are recognized. These include two types of plant-ash soda-lime-silica glass (v-Na-Ca), a mineral soda-lime-silica glass (m-Na-Ca), a high-lime high-alumina (HLHA) glass, a mineral soda-high alumina (m-Na-Al), glass, a plant ash soda-high alumina (v-Na-Al) glass and a high lead composition glass. The reconstruction and dating of depositional contexts suggests a shift in glass sources at the end of the tenth century CE. The issue of source identification is discussed and occurrences at other African sites are mapped, providing new data towards an understanding of trade and exchange networks.
DOI: 10.6084/m9.figshare.12200390.v1
title: Global near-real-time CO2 emission

description: Timely, comprehensive and accurate dataset of CO2 emissions from fossil fuel combustion and cement production are fundamental prerequisites to understanding the global carbon cycle and designing evidenced-based policies for reducing carbon emissions. Here we provided daily CO2 emission data record started from Jan. 1<sup>st</sup> 2019. The dataset uncovered the daily CO2 dynamics through daily, weekly and seasonal variations as well as the change of daily CO2 due to the holiday events and the impact of COVID-19 pandemic.Such near-real-time CO2 dataset would be of great advantage to further monitoring the human activities and to capture the impacts of COVID-19 for long term.<br>
DOI: 10.6084/m9.figshare.12200273
title: Complete data set for Alkbh7 paper

description: Complete data set for Kulkarni et al. Alkbh7 paper (2020 eLife).Each tab contains data for different types of experiments, with figure panels annotated.
DOI: 10.6084/m9.figshare.12200159
title: Targeted Gown and Glove Use to Prevent Staphylococcus aureus Acquisition in Community-Based Nursing Homes: A pilot study

description: This objective of this study was to test the feasibility of targeted gown and glove use by healthcare workers caring for high risk nursing home residents to prevent Staphylococcus aureus acquisition in short stay residents. During a 2-month baseline period nursing home residents were swabbed at the nose and inguinal fold at study period start or admission to the facility. Residents were swabbed again at discharge or study period end, whichever came first. This process was repeated during a 2-month intervention period where healthcare workers wore gowns and gloves for high risk care activities while caring for residents with wounds or medical devices. Residents could be enrolled in the study more than once if they were discharged during a study period and then readmitted during that same study period, or if they were in the nursing home for both study periods.
DOI: 10.6084/m9.figshare.12200144
title: Example File 2.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.12200159.v1
title: Targeted Gown and Glove Use to Prevent Staphylococcus aureus Acquisition in Community-Based Nursing Homes: A pilot study

description: This objective of this study was to test the feasibility of targeted gown and glove use by healthcare workers caring for high risk nursing home residents to prevent Staphylococcus aureus acquisition in short stay residents. During a 2-month baseline period nursing home residents were swabbed at the nose and inguinal fold at study period start or admission to the facility. Residents were swabbed again at discharge or study period end, whichever came first. This process was repeated during a 2-month intervention period where healthcare workers wore gowns and gloves for high risk care activities while caring for residents with wounds or medical devices. Residents could be enrolled in the study more than once if they were discharged during a study period and then readmitted during that same study period, or if they were in the nursing home for both study periods.
DOI: 10.6084/m9.figshare.12200138
title: Example File 1.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.12200141
title: Example File 3.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.12200138.v1
title: Example File 1.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.12200141.v1
title: Example File 3.txt

description: Example files to run DrugSimDB interface
DOI: 10.6084/m9.figshare.12200000
title: The development of an mHealth educational intervention for first-time hearing aid users: combining theoretical and ecologically valid approaches

description: <b>Objective:</b> This paper describes the development of a novel mobile health (mHealth) educational intervention, called m2Hear, designed for first-time hearing aid users based on previously developed educational multimedia videos, or reusable learning objects (RLOs), branded C2Hear. <b>Design:</b> The development of m2Hear used theoretical and ecologically valid approaches. The COM-B model and associated Theoretical Domains Framework were employed to identify specific components (or “active ingredients”) of the original RLOs that facilitate hearing aid use. An mHealth platform was then developed following an iterative, user-centred and participatory design approach. <b>Study sample:</b> Fifteen existing hearing aid users completed synchronous, real-time Think Aloud interviews. A sub-group of these participants (<i>n</i> = 5), along with patient and public involvement panel members (<i>n</i> = 4), subsequently reviewed the usability of the mHealth platform. <b>Results:</b> While factors associated with Capability featured strongly across all RLOs, topics relating to Opportunity and Motivation were also incorporated. The RLOs were broken-down into 42 shorter mobile-enhanced RLOs (or mRLOs). Each mRLO was labelled with a specific user-centred question generated from the Think Aloud interviews. The final mHealth platform was developed following four separate usability iterations. <b>Conclusions:</b> Overall, m2Hear provides greater opportunities for individualised learning and encourages greater interaction to facilitate self-management in first-time hearing aid users.