cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.tazu39
title: Occurrence Download

description: A dataset containing 7484078 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 7484078 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001402-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.v66b2
title: Data from: Partially incorrect fossil data augment analyses of discrete trait evolution in living species

description: Ancestral state reconstruction of discrete character traits is often vital
 when attempting to understand the origins and homology of traits in living
 species. The addition of fossils has been shown to alter our understanding
 of trait evolution in extant taxa, but researchers may avoid using fossils
 alongside extant species if only few are known, or if the designation of
 the trait of interest is uncertain. Here, I investigate the impacts of
 fossils and incorrectly coded fossils in the ancestral state
 reconstruction of discrete morphological characters under a likelihood
 model. Under simulated phylogenies and data, likelihood-based models are
 generally accurate when estimating ancestral node values. Analyses with
 combined fossil and extant data always outperform analyses with extant
 species alone, even when around one quarter of the fossil information is
 incorrect. These results are especially pronounced when model assumptions
 are violated, such as when there is a trend away from the root value.
 Fossil data are of particular importance when attempting to estimate the
 root node character state. Attempts should be made to include fossils in
 analysis of discrete traits under likelihood, even if there is uncertainty
 in the fossil trait data.
description: runSimulationsThis file contains R scripts to simulated discrete traits and phylogenies used in the analyses
DOI: 10.5061/dryad.c8qn1
title: Data from: The dynamics of recovery and growth: how defoliation affects stored resources

description: Growth rate varies widely among species and the trade-off between growth
 rate and storage or maintenance traits is a principal axis of variation
 between species. Many plant species have substantial root stores, but very
 little is known about how growth rate modifies responses of these stores
 to defoliation and other stresses. Species with different growth rates are
 predicted to respond in distinct ways, because of variation in the
 pre-defoliation allocation to storage. Here, we quantified the dynamics of
 stored carbohydrates in seven species with varying growth rate, following
 defoliation in a pot experiment. For faster growing species, there was
 significant reduction in carbohydrate concentration following defoliation,
 followed by relatively fast recovery, whereas for slower growing species,
 carbohydrate concentration levels remained relatively invariant across
 treatments. Results for total carbohydrates mirrored those for
 concentration, but were not as significant. Our findings were consistent
 with the idea that faster growing species respond more rapidly than slower
 growers to defoliation, through changes in carbohydrate pool
 concentrations. Growth rate as an indicator of life-history and ecological
 strategy may therefore be key to understanding post-defoliation recovery
 and storage strategies.
description: carbohydrate storage
 dataColumn 1: growth
 category, as in Table 2 of paper, Column 2: treatment (c= control, t1= one
 defoliation, t2= two defoliations), Column 3: harvest (harvests 1-6),
 Column 4: carbohydrate concentration (mass spectrometry counts), Column 5:
 total taproot carbohydrates (mass spectrometer counts)
DOI: 10.5061/dryad.9824c
title: Data from: Community water improvement, household water insecurity, and women’s psychological distress: an intervention and control study in Ethiopia

description: Background: Over 650 million people worldwide lack access to safe water
 supplies, and even among those who have gained access to ‘improved’
 sources, water may be seasonally unreliable, far from homes, expensive,
 and provide insufficient quantity. Measurement of water access at the
 level of communities and households remains crude, and better measures of
 household water insecurity are urgently needed to inform needs assessments
 and monitoring and evaluation. We set out to assess the validity of a
 quantitative scale of household water insecurity, and to investigate (1)
 whether improvements to community water supply reduce water insecurity,
 (2) whether water interventions affect women’s psychological distress, and
 (3) the impacts of water insecurity on psychological distress, independent
 of socio-economic status, food security, and harvest quality. Methods and
 Findings: Measures were taken before and one to six months after a
 community water supply improvement in three villages in rural northern
 Ethiopia. Villages similar in size and access to water sources and other
 amenities did not receive interventions, and served as controls. Household
 water insecurity was assessed using a 21-item scale based on prior
 qualitative work in Ethiopia. Women’s psychological distress was assessed
 using the WHO Self-Reporting Questionnaire (SRQ-20). Respondents were
 either female heads of household or wives of the heads of household (n =
 247 at baseline, n = 223 at endline); 123 households provided data at both
 rounds. The intervention was associated with a decline of approximately 2
 points on the water insecurity scale between baseline and endline compared
 to the control (beta -1.99; 95% CI’s -3.15, -0.84). We did not find
 evidence of impact of the intervention on women’s psychological distress.
 Water insecurity was, however, predictive of psychological distress (p
 &lt;0.01), independent of household food security and the quality of
 the previous year’s harvest. Conclusion: These results contribute to the
 construct validity of our water insecurity scale, and establish our
 approach to measuring water insecurity as a plausible means of evaluating
 water interventions. Improvements to community water supplies were
 effective in reducing household water insecurity, but not psychological
 distress, in this population. Water insecurity was an important predictor
 of psychological distress. This study contributes to an emerging
 literature on quantitative assessment of household water insecurity, and
 draws attention to the potential impact of improved access to water on
 women’s mental well-being.
description: water insecurity in
 Wello, EthiopiawaterInsecurity_Wello.dta
DOI: 10.5061/dryad.7s5p5
title: Data from: Evolution of phenotype-environment associations by genetic responses to selection and phenotypic plasticity in a temporally autocorrelated environment

description: Covariation between population-mean phenotypes and environmental
 variables, sometimes termed a ‘phenotype-environment association’ (PEA),
 can result from phenotypic plasticity, genetic responses to natural
 selection, or both. PEAs can potentially provide information on the
 evolutionary dynamics of a particular set of populations, but this
 requires a full theoretical characterization of PEAs and their evolution.
 Here, we derive formulas for the expected PEA in a temporally fluctuating
 environment for a quantitative trait with a linear reaction norm. We
 compare several biologically relevant scenarios, including constant versus
 evolving plasticity, and the situation where an environment affects both
 development and selection but at different time periods. We find that PEAs
 are determined not only by biological factors (e.g., magnitude of
 plasticity, genetic variation), but also environmental factors, such as
 the association between the environments of development and of selection,
 and in some cases the level of temporal autocorrelation. We also describe
 how a PEA can be used to estimate the relationship between an optimum
 phenotype and an environmental variable (i.e., the environmental
 sensitivity of selection), an important parameter for determining the
 extinction risk of populations experiencing environmental change. We
 illustrate this ability using published data on the predator-induced
 morphological responses of tadpoles to predation risk.
description: Simulation Code for
 Multiple Environmental Variables ScenarioRun using
 RSimulation Code for
 Delay between Development and Selection ScenarioRun in
 R
DOI: 10.5061/dryad.q448dt8
title: Data from: Changes in African large carnivore diets over the past half-century reveal the loss of large prey

description: 1. Globally, large carnivores are declining due to direct persecution,
 habitat loss and prey depletion. The effects of prey depletion could be
 amplified by changes in the composition of the herbivore (prey) community
 that provoke changes in carnivore diets, but this possibility has received
 little attention. 2. Here, we tested for changes over the past half
 century in prey selection by the large carnivore guild in Zambia’s Kafue
 National Park. 3. Across 52 predator-prey dyads, 71% of the changes we
 observed were consistent with the hypothesis that large prey have become
 less important and small prey have become more important. Dietary niche
 breadth has decreased for KNP carnivores, and niche overlap has
 consequently increased. 4. We tested whether changes in the importance of
 prey species are related to their current abundance, and uniformly found
 that prey that have increased in importance are now relatively common,
 while those that have decreased in importance are now relatively rare. 5.
 We identify four potential effects of these changes for conservation
 (through potential effects on intra-guild competition, group size, the
 energetics of hunting and vulnerability to snaring) that warrant
 investigation. Synthesis and applications: Patterns of prey selection by
 the large carnivores in Kafue National Park have changed appreciably over
 the past half century. Decreased predation on large prey, which are now
 relatively rare, has caused niche compression and increased the overlap in
 carnivore diets. Predation by all of the large carnivores in the ecosystem
 now concentrates on four small prey species that remain relatively
 abundant (impala, puku, lechwe and warthog). Methods to detect the changes
 in predator-prey relationships we observed are well-established, but are
 rarely applied to large carnivore-ungulate systems. To guide conservation
 of ecosystem function, monitoring programs should be designed to consider
 whether prey depletion alters patterns of predation or competition within
 the predator guild, because these interactions have well-established
 effects on the distribution and abundance of both predators and prey. If
 the patterns seen in Kafue prove to be general, then where carnivores are
 limited by prey depletion, conservation efforts will be most effective if
 they focus particularly on mitigating the loss of large prey. In Kafue,
 targeted efforts to protect prey larger than 200 kilograms, particularly
 buffalo, should be a priority.13-Jun-2018
description: Changes in African large
 carnivore diets over the past half-century reveal the loss of large
 preyThe frequency of each
 ungulate prey species in the diets of African wild dogs, cheetahs, lions
 and leopards in Kafue National Park, for two 3-year time periods, one in
 the 1960s and one in the 2010s.kafue_kills.txt
DOI: 10.5061/dryad.2260h
title: Data from: Nitrogen fertilization, not water addition, alters plant phylogenetic community structure in a semi-arid steppe

description: 1. Anthropogenic environmental changes, such as nitrogen (N) enrichment
 and alteration in precipitation regimes, significantly influence
 ecosystems worldwide. However, we know little about whether and how these
 changes alter the phylogenetic properties of ecological communities. 2.
 Based on a seven-year field experiment in the temperate semi-arid steppe
 of Inner Mongolia, China, we investigated the influence of increased N and
 precipitation on plant phylogenetic structure and phylogenetic patterns of
 species colonization and extinction. 3. Our study demonstrated that N and
 water addition influenced different aspects of plant community structure.
 Water addition increased plant species richness by preventing species
 extinction and facilitating species colonization, without altering
 community phylogenetic structure. By contrast, N addition did not alter
 species richness, but promoted the colonization of species distantly
 related to the residents, changing community phylogenetic structure from
 being neutral to overdispersion. We also found evidence for
 abundance-based extinction where rarer species were at greater risk of
 extinction, and functional-based species extinction where shorter-statured
 plants and shallower-rooted plants were at greater risk of extinction. 4.
 Synthesis. Our study provides the first experimental evidence that plant
 phylogenetic community structure responds differently to different aspects
 of global changes. Importantly, the colonization of non-resident species,
 rather than the extinction of resident species, contributed predominantly
 to changes in plant community phylogenetic structure in response to N
 amendment. Our findings highlight the importance of considering species
 phylogenetic relationships for a more complete understanding of
 anthropogenic influences on ecological communities.
description: community
 structureSpecies richness, Mean
 phylogenetic distance (MPD), and Net relatedness index (NRI) for all
 experimental plots.community_structure.csvphylogenyPhylogenetic tree for the 58 species that were observed in the experimental area.betaNTIThe phylogenetic dissimilarity (beta NTI) of colonist and locally extinct species to the resident species.
DOI: 10.34740/kaggle/dsv/14613022
title: Augmented Hindi Product Review Dataset
DOI: 10.5061/dryad.jk206
title: Data from: Evaluation of the phase-dependent rhythm control of human walking using phase response curves

description: Humans and animals control their walking rhythms to maintain motion in a
 variable environment. The neural mechanism for controlling rhythm has been
 investigated in many studies using mechanical and electrical stimulation.
 However, quantitative evaluation of rhythm variation in response to
 perturbation at various timings has rarely been investigated. Such a
 characteristic of rhythm is described by the phase response curve (PRC).
 Dynamical simulations of human skeletal models with changing walking
 rhythms (phase reset) described a relation between the effective phase
 reset on stability and PRC, and phase reset around touch-down was shown to
 improve stability. A PRC of human walking was estimated by pulling the
 swing leg, but such perturbations hardly influenced the stance leg, so the
 relation between the PRC and walking events was difficult to discuss. This
 research thus examines human response to variations in floor velocity.
 Such perturbation yields another problem, in that the swing leg is
 indirectly (and weakly) perturbed, so the precision of PRC decreases. To
 solve this problem, this research adopts the weighted spike-triggered
 average (WSTA) method. In the WSTA method, a sequential pulsed
 perturbation is used for stimulation. This is in contrast with the
 conventional impulse method, which applies an intermittent impulsive
 perturbation. The WSTA method can be used to analyze responses to a large
 number of perturbations for each sequence. In the experiment,
 perturbations are applied to walking subjects by rapidly accelerating and
 decelerating a treadmill belt, and measured data are analyzed by the WSTA
 and impulse methods. The PRC obtained by the WSTA method had clear and
 stable waveforms with a higher temporal resolution than those obtained by
 the impulse method. By investigation of the rhythm transition for each
 phase of walking using the obtained PRC, a rhythm change that extends the
 touch-down and mid-single support phases is found to occur.
description: Measured data of
 acceleration perturbation for WSTAMeasured data of the
 expriment with sequential acceleration perturbation. Data contain the
 speed of treadmill and the leg motion of human
 subjects.expDataWSTA_SpeedUp.zipMeasured data of deceleration perturbation for WSTAMeasured data of the expriment with sequential deceleration perturbation. Data contain the speed of treadmill and the leg motion of human subjects.expDataWSTA_SpeedDown.zipMeasured data of acceleration perturbation for Impulse methodMeasured data of the expriment with intermittent acceleration perturbations. Data contain the speed of treadmill and the leg motion of human subjects.expDataImpulse_SpeedUp.zipMeasured data of deceleration perturbation for Impulse methodMeasured data of the expriment with intermittent deceleration perturbation. Data contain the speed of treadmill and the leg motion of human subjects.expDataImpulse_SpeedDown.zip
DOI: 10.5061/dryad.f0f2642
title: Data from: Cross-cultural similarity in relationship-specific social touching

description: Many species use touching for reinforcing social structures, and
 particularly non-human primates use social grooming for managing their
 social networks. However, it is still unclear how social touch contributes
 to maintenance and reinforcement of human social networks. Human studies
 in Western cultures suggest that the body locations where touch is allowed
 are associated with the strength of the emotional bond between the person
 touched and the toucher. However, it is unknown to what extent this
 relationship is culturally universal and generalizes to non-Western
 cultures. Here, we compared relationship-specific, bodily touch allowance
 maps across one Western (N = 386, United Kingdom) and one East Asian (N =
 255, Japan) country. In both cultures, strength of emotional bond was
 linearly associated with permissible touch area. However, Western
 participants experienced social touching as more pleasurable than Asian
 participants. These results indicate a similarity of emotional bonding via
 social touch between East Asian and Western cultures.
description: Subject info,
 Japansubfiles-jp.tar.gzSubject info, UKsubfiles-uk.tar.gzQuality control images, Japanqc_images_jp.tar.gzQuality control images, UKqc_images_uk.tar.gzRaw data files, Japanese samplemat-files-jp.tar.gzRaw data files, UK samplemat-files-uk.tar.gzData files for R-analysis, UKR-files-uk.zipData files for R-analysis, JapanR-files-jp.zipREADMEThis file contains description of the data files and suggested structure for extracted data to ensure the analysis code runs smoothly.
DOI: 10.5061/dryad.5qj7h09
title: Data from: Inferring continuous and discrete population genetic structure across space

description: A classic problem in population genetics is the characterization of
 discrete population structure in the presence of continuous patterns of
 genetic differentiation. Especially when sampling is discontinuous, the
 use of clustering or assignment methods may incorrectly ascribe
 differentiation due to continuous processes (e.g., geographic isolation by
 distance) to discrete processes, such as geographic, ecological, or
 reproductive barriers between populations. This reflects a shortcoming of
 current methods for inferring and visualizing population structure when
 applied to genetic data deriving from geographically distributed
 populations. Here, we present a statistical framework for the simultaneous
 inference of continuous and discrete patterns of population structure. The
 method estimates ancestry proportions for each sample from a set of
 two-dimensional population layers, and, within each layer, estimates a
 rate at which relatedness decays with distance. This thereby explicitly
 addresses the "clines versus clusters" problem in modeling
 population genetic variation, and remedies some of the overfitting to
 which nonspatial models are prone. The method produces useful descriptions
 of structure in genetic relatedness in situations where separated,
 geographically distributed populations interact, as after a range
 expansion or secondary contact. We demonstrate the utility of this
 approach using simulations and by applying it to empirical datasets of
 poplars and black bears in North America.
description: Data from: Inferring
 Continuous and Discrete Population Genetic Structure Across
 SpaceThis repo contains a
 snapshot of the data files, analyses, and code for the method conStruct at
 the time of publication.conStruct.zip
DOI: 10.5281/zenodo.17978518
title: SHM_415396_HST_3D

description: Photogrammetric 3D model of a Middle Neolithic boat axe type E:1 (Vellinge 1) collected from Hajom parish in Västra Götaland and currently held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=689

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/C7731AAC-575D-4529-8D90-D28ED3524862
DOI: 10.5281/zenodo.17550958
title: PRISMA Full-Text Screening & Cohen's Kappa (80 articles) – AI in Sustainable Finance and ESG

description: Reproducible data for full-text screening stage (80 articles).

Cohen's Kappa = 0.961 (z = 8.44, p < 0.001) → almost perfect agreement Disagreements: 3/80, resolved by third reviewer.

Directly addresses Reviewer #2 point 1 (screening flow with kappa).

Files: R script, CSV, result, README.
DOI: 10.5281/zenodo.17978517
title: SHM_415396_HST_3D

description: Photogrammetric 3D model of a Middle Neolithic boat axe type E:1 (Vellinge 1) collected from Hajom parish in Västra Götaland and currently held in the collections of the National Historical Museums in Stockholm.

Link to the Dynamic Collection platform  

https://dyncolldev.ht.lu.se/plus/artifact_view.php?item=689

Link to Sök I Samlingarna  

https://samlingar.shm.se/object/C7731AAC-575D-4529-8D90-D28ED3524862
DOI: 10.5281/zenodo.17550957
title: PRISMA Full-Text Screening & Cohen's Kappa (80 articles) – AI in Sustainable Finance and ESG

description: Reproducible data for full-text screening stage (80 articles).

Cohen's Kappa = 0.961 (z = 8.44, p < 0.001) → almost perfect agreement Disagreements: 3/80, resolved by third reviewer.

Directly addresses Reviewer #2 point 1 (screening flow with kappa).

Files: R script, CSV, result, README.