cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10518965
title: Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide

description: Temozolomide kills cancer cells by forming O6-methylguanine (O6-MeG), which leads to cell cycle arrest and apoptosis. However, O6-MeG repair by O6-methylguanine-DNA methyltransferase (MGMT) contributes to drug resistance. Characterizing genomic profiles of O6-MeG could elucidate how O6-MeG accumulation is influenced by repair, but there are no methods to map genomic locations of O6-MeG. Here, we developed an immunoprecipitation- and polymerase-stalling-based method, termed O6-MeG-seq, to locate O6-MeG across the whole genome at single-nucleotide resolution. We analyzed O6-MeG formation and repair with regards to sequence contexts and functional genomic regions in a glioblastoma-derived cell line and evaluated the impact of MGMT expression. O6-MeG signatures were highly similar to mutational signatures from patients previously treated with temozolomide. Furthermore, MGMT did not preferentially repair O6-MeG with respect to sequence context, chromatin state or gene expression level, however, may protect oncogenes from mutations. Finally, we found an MGMT-independent strand bias in O6-MeG accumulation in highly expressed genes. These data provide high resolution insight on how O6-MeG formation and repair are impacted by genome structure and nucleotide sequence. Further, O6-MeG-seq is expected to enable future studies of DNA modification signatures as diagnostic markers for addressing drug resistance and preventing secondary cancers.
DOI: 10.5281/zenodo.14001558
title: Single-nucleotide-resolution genomic maps of O6-methylguanine from  the glioblastoma drug temozolomide

description: Temozolomide kills cancer cells by forming O6-methylguanine (O6-MeG), which leads to cell cycle arrest and apoptosis. However, O6-MeG repair by O6-methylguanine-DNA methyltransferase (MGMT) contributes to drug resistance. Characterizing genomic profiles of O6-MeG could elucidate how O6-MeG accumulation is influenced by repair, but there are no methods to map genomic locations of O6-MeG. Here, we developed an immunoprecipitation- and polymerase-stalling-based method, termed O6-MeG-seq, to locate O6-MeG across the whole genome at single-nucleotide resolution. We analyzed O6-MeG formation and repair with regards to sequence contexts and functional genomic regions in glioblastoma-derived cell lines and evaluated the impact of MGMT. O6-MeG signatures were highly similar to mutational signatures from patients previously treated with temozolomide. Furthermore, MGMT did not preferentially repair O6-MeG with respect to sequence context, chromatin state or gene expression level, however, may protect oncogenes from mutations. Finally, we found an MGMT-independent strand bias in O6-MeG accumulation in highly expressed genes. These data provide high resolution insight on how O6-MeG formation and repair are impacted by genome structure and nucleotide sequence. Further, O6-MeG-seq is expected to enable future studies of DNA modification signatures as diagnostic markers for addressing drug resistance and preventing secondary cancers.
DOI: 10.5281/zenodo.14524823
title: Single-nucleotide-resolution genomic maps of O6-methylguanine from the glioblastoma drug temozolomide

description: Temozolomide kills cancer cells by forming O6-methylguanine (O6-MeG), which leads to cell cycle arrest and apoptosis. However, O6-MeG repair by O6-methylguanine-DNA methyltransferase (MGMT) contributes to drug resistance. Characterizing genomic profiles of O6-MeG could elucidate how O6-MeG accumulation is influenced by repair, but there are no methods to map genomic locations of O6-MeG. Here, we developed an immunoprecipitation- and polymerase-stalling-based method, termed O6-MeG-seq, to locate O6-MeG across the whole genome at single-nucleotide resolution. We analyzed O6-MeG formation and repair with regards to sequence contexts and functional genomic regions in a glioblastoma-derived cell line and evaluated the impact of MGMT expression. O6-MeG signatures were highly similar to mutational signatures from patients previously treated with temozolomide. Furthermore, MGMT did not preferentially repair O6-MeG with respect to sequence context, chromatin state or gene expression level, however, may protect oncogenes from mutations. Finally, we found an MGMT-independent strand bias in O6-MeG accumulation in highly expressed genes. These data provide high resolution insight on how O6-MeG formation and repair are impacted by genome structure and nucleotide sequence. Further, O6-MeG-seq is expected to enable future studies of DNA modification signatures as diagnostic markers for addressing drug resistance and preventing secondary cancers.
DOI: 10.15468/dl.ndpgab
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Procellaria leucomelas Temminck, 1836",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057789-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.28141559
title: Lagisz_et_al_code_results_ESM.html from Priced out of belonging? Insufficient concessions on membership fees across international societies in ecology and evolution

description: Additional methodological details, results and code rendered into html format.
DOI: 10.15468/dl.qcvkwt
title: Occurrence Download

description: A dataset containing 458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is IDN.11.22_1",
 "TaxonKey is Passeriformes",
 "Year 1994-2023"
 ]
}

 The dataset includes 458 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057790-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28141562
title: Lagisz_et_al_code_results_ESM.Rmd from Priced out of belonging? Insufficient concessions on membership fees across international societies in ecology and evolution

description: Additional methodological details, results and code in markdown format.
DOI: 10.6084/m9.figshare.28141562.v1
title: Lagisz_et_al_code_results_ESM.Rmd from Priced out of belonging? Insufficient concessions on membership fees across international societies in ecology and evolution

description: Additional methodological details, results and code in markdown format.
DOI: 10.34740/kaggle/dsv/10383769
title: ⏳ endoflife.date database (duckdb)
DOI: 10.15468/dl.9aygvm
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys griseus Döderlein, 1883",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057792-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ft5msh
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaphurus davidianus Milne-Edwards, 1866"
 ]
}

 The dataset includes 125 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057793-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28052177.v6
title: Poisson MSN instructions

description: This is the data and code related to paper<br><i>Enhancing Spatial Count Data Modeling: A new method for Poisson Means of Stratified Nonhomogeneity</i><br>for reviewing.
DOI: 10.15468/dl.vhezfz
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Didymodon laevigatus (Mitt.) R.H.Zander",
 "Year 1970-2025"
 ]
}

 The dataset includes 325 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057794-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhzggg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malakichthys similis Yamanoue & Matsuura, 2004",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057795-241126133413365/datasets/export for details.
DOI: 10.21227/mbtn-zt12
title: Residential Load Consumption, Electricity price, Renewable Energy Generation DATA Set in the UK 

description: This dataset comprises residential energy data from the UK, covering a nearly five-year period from 2015 to 2020. It includes a total of 201,605 data points, each meticulously recorded at 15-minute intervals, ensuring a high level of granularity. The dataset provides detailed attributes such as the date, time, residential energy load (measured in kilowatts), electricity price (in GBP), solar energy generation (in kilowatts), wind energy generation (in kilowatts), and various weather-related parameters. This comprehensive data collection captures the intricate dynamics of residential energy consumption, renewable energy generation patterns, and electricity pricing, offering a robust foundation for energy forecasting and analysis over an extended period.
DOI: 10.6084/m9.figshare.28141595
title: Supplementary Material from Human-interpretable clustering of short-text using large language models

description: Supplement.tex
DOI: 10.6084/m9.figshare.28141595.v1
title: Supplementary Material from Human-interpretable clustering of short-text using large language models

description: Supplement.tex
DOI: 10.15468/dl.utageh
title: Occurrence Download

description: A dataset containing 167 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudorca crassidens (Owen, 1846)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 167 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057796-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj9d7n
title: Occurrence Download

description: A dataset containing 516088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is ESP.1.7_1",
 "TaxonKey is Passeriformes",
 "Year 1994-2023"
 ]
}

 The dataset includes 516088 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057788-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2randc
title: Occurrence Download

description: A dataset containing 175494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is IND.17.9_1",
 "TaxonKey is Passeriformes",
 "Year 1994-2023"
 ]
}

 The dataset includes 175494 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057791-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dsqcky
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phocaena crassidens Owen, 1846",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057797-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.27950739.v1
title: Metagenomic mining reveals novel viral histones in dsDNA viruses

description: This repository contain the data used for the study "Metagenomic mining reveals novel viral histones in dsDNA viruses" as well as the results and the code used to make the different figures of the paper.
DOI: 10.15468/dl.sew3ny
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myoxocephalus jaok (Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 15 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057798-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v27a5y
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didymodon maschalogena (Renauld & Cardot) Broth."
 ]
}

 The dataset includes 146 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057799-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkqzdc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cottus jaok Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057800-241126133413365/datasets/export for details.
DOI: 10.4121/234a39e3-0832-4a0f-b0df-e8124793c15f
title: Research data underlying the PhD thesis: Frequency-domain design for non-conventional active vibration control

description: This dataset is related to the PhD thesis " Frequency-domain design for non-conventional active vibration control" by Marcin Brunon Kaczmarek.The folders contain data and scripts supporting the experimental part of the thesis. The remaining results presented in the thesis can be fully reproduced based on the information provided. Chapter3_data - This folder contains the experimental data presented in chapter 3 of the thesis and published in M.B. Kaczmarek, S.H. Hossein Nia, Creating bandgaps in active piezoelectric slender beams through positive position feedback control, Smart Materials and Structures, 33 125039, 2024. https://doi.org/10.1088/1361-665X/ad9443Chapter3_LabVIew - This folder contains LabVIEW files for the experiments presented chapter 3 of the thesis and published in M.B. Kaczmarek, S.H. Hossein Nia, Creating bandgaps in active piezoelectric slender beams through positive position feedback control, Smart Materials and Structures, 33 125039, 2024. https://doi.org/10.1088/1361-665X/ad9443Chapter5_data - This folder contains the experimental data and matlab code for tuning the controller presented in chapter 5 of the thesis and published in M.B. Kaczmarek, S.H. HosseinNia, Fractional-order negative position feedback for vibration attenuation, Fractal and Fractional 7 (3), 222, 2023. https://doi.org/10.3390/fractalfract7030222<br><br>
DOI: 10.4121/234a39e3-0832-4a0f-b0df-e8124793c15f.v1
title: Research data underlying the PhD thesis: Frequency-domain design for non-conventional active vibration control

description: This dataset is related to the PhD thesis " Frequency-domain design for non-conventional active vibration control" by Marcin Brunon Kaczmarek.The folders contain data and scripts supporting the experimental part of the thesis. The remaining results presented in the thesis can be fully reproduced based on the information provided. Chapter3_data - This folder contains the experimental data presented in chapter 3 of the thesis and published in M.B. Kaczmarek, S.H. Hossein Nia, Creating bandgaps in active piezoelectric slender beams through positive position feedback control, Smart Materials and Structures, 33 125039, 2024. https://doi.org/10.1088/1361-665X/ad9443Chapter3_LabVIew - This folder contains LabVIEW files for the experiments presented chapter 3 of the thesis and published in M.B. Kaczmarek, S.H. Hossein Nia, Creating bandgaps in active piezoelectric slender beams through positive position feedback control, Smart Materials and Structures, 33 125039, 2024. https://doi.org/10.1088/1361-665X/ad9443Chapter5_data - This folder contains the experimental data and matlab code for tuning the controller presented in chapter 5 of the thesis and published in M.B. Kaczmarek, S.H. HosseinNia, Fractional-order negative position feedback for vibration attenuation, Fractal and Fractional 7 (3), 222, 2023. https://doi.org/10.3390/fractalfract7030222<br><br>
DOI: 10.15468/dl.pv7hdx
title: Occurrence Download

description: A dataset containing 24130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((28.35896 40.24943,28.42067 40.1177,28.70199 40.08994,28.7764 40.13158,28.73103 40.2836,28.437 40.27944,28.35896 40.24943))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 24130 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057801-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy6ch8
title: Occurrence Download

description: A dataset containing 148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Inimicus japonicus (Cuvier, 1829)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 148 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057802-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzm4sh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelor japonicum Cuvier, 1829",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057803-241126133413365/datasets/export for details.
DOI: 10.4121/0e245592-63a8-47e7-b7b8-0136082caa7e
title: Data underlying the publication "Nile crocodiles in Lake Nasser, Egypt, are found close to fishermen’s camps indicating potential conflicts"

description: In order to test the relative importance of anthropogenic and environmental variables determining the Nile crocodile distribution in Lake Nasser, Egypt, we conducted systematic crocodile counts at night in 2018. We surveyed about 30% of the shorelines. The survey lasted for 20 nights from August to October 2018, and each team covered approximately 45 km of shoreline per night. The survey started one hour after sunset and continued for about 5.5 hours each night. Crocodiles were detected through their eye reflections during the spotlight survey.
DOI: 10.4121/0e245592-63a8-47e7-b7b8-0136082caa7e.v1
title: Data underlying the publication "Nile crocodiles in Lake Nasser, Egypt, are found close to fishermen’s camps indicating potential conflicts"

description: In order to test the relative importance of anthropogenic and environmental variables determining the Nile crocodile distribution in Lake Nasser, Egypt, we conducted systematic crocodile counts at night in 2018. We surveyed about 30% of the shorelines. The survey lasted for 20 nights from August to October 2018, and each team covered approximately 45 km of shoreline per night. The survey started one hour after sunset and continued for about 5.5 hours each night. Crocodiles were detected through their eye reflections during the spotlight survey.
DOI: 10.6084/m9.figshare.28141504
title: New cytotoxic compounds from <i>Viscum coloratum</i> (Kom.) Nakai

description: Twenty-one compounds were isolated and identified from the ethanol extract of <i>Viscum coloratum</i> (Kom.) Nakai, including two new compounds (<b>1</b> and <b>3</b>), a new artificial product (<b>2</b>) and eighteen known compounds (<b>4–21</b>). Compounds <b>4–9</b> and <b>11–20</b> were isolated from <i>Santalaceae</i> for the first time. In this paper, compounds’ structures identified by NMR spectroscopy and compare their data with those in the literature. Meanwhile, all compounds were assessed for cytotoxic activity against HepG2 cells, revealing that compound <b>1</b> exhibited significant cytotoxicity with IC<sub>50</sub> value 6.70 ± 2.12 μM.
DOI: 10.6084/m9.figshare.28141504.v1
title: New cytotoxic compounds from <i>Viscum coloratum</i> (Kom.) Nakai

description: Twenty-one compounds were isolated and identified from the ethanol extract of <i>Viscum coloratum</i> (Kom.) Nakai, including two new compounds (<b>1</b> and <b>3</b>), a new artificial product (<b>2</b>) and eighteen known compounds (<b>4–21</b>). Compounds <b>4–9</b> and <b>11–20</b> were isolated from <i>Santalaceae</i> for the first time. In this paper, compounds’ structures identified by NMR spectroscopy and compare their data with those in the literature. Meanwhile, all compounds were assessed for cytotoxic activity against HepG2 cells, revealing that compound <b>1</b> exhibited significant cytotoxicity with IC<sub>50</sub> value 6.70 ± 2.12 μM.
DOI: 10.15468/dl.69aq3y
title: Occurrence Download

description: A dataset containing 5004 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 5004 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057804-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gjr48c
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carangoides equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 461 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057805-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wve6ar
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kaiwarinus equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 235 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057806-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.