cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.34944/dspace/6300
title: Cement Embolism Systematic Review search strategies

description: The review team worked with a medical librarian to develop search strategies for each database using a combination of keywords and subject headings. The search was developed for PubMed (NLM) and was translated to Embase (Elsevier), Web of Science (Clarivate Analytics), Cochrane Library (Wiley) and CINAHL (EbscoHost) using a combination of keywords and subject headings. A grey literature search included OAIster and the TRIP database. The search included no date restriction but was limited to case reports and case series. The final search was completed on January 5, 2021. The full search details are provided in Appendices. PubMed (NLM) from inception to 1/5/2021 (548 Results) Embase (Elsevier) from inception to 1/5/2021 (940 Results) Web of Science (Clarivate Analytics) from inception to 1/5/2021 (404 Results) Cochrane Library (Wiley) from inception to 1/5/2021 (115 Results) CINAHL (EBSCOHost) from inception to 1/5/2021 (308 Results) The search resulted in 2,358 studies (43 from grey literature sources). 709 duplicate studies were found and omitted using Endnote X.7 for the deduplication of records and 1,649 references were eligible to screen. Studies were screened by title and abstract by two blinded and independent reviewers. If a tiebreaker was needed, a third reviewer was called in. This process was repeated for full text article screening and article selection.
description: The review team worked with a medical librarian to develop search strategies for each database using a combination of keywords and subject headings. The search was developed for PubMed (NLM) and was translated to Embase (Elsevier), Web of Science (Clarivate Analytics), Cochrane Library (Wiley) and CINAHL (EbscoHost) using a combination of keywords and subject headings. A grey literature search included OAIster and the TRIP database. The search included no date restriction but was limited to case reports and case series. The final search was completed on January 5, 2021.
DOI: 10.5063/2r3q2c
title: Data: Density estimates for Canada lynx vary among estimation methods

description: Unbiased population density estimates are critical for ecological research and wildlife management but are often difficult to obtain. Researchers use a variety of sampling and statistical methods to generate estimates of density, but few studies have compared estimates across methods. During 2016-17, we surveyed Canada lynx (Lynx canadensis) in southwestern Yukon Territory, Canada using track transect counts, hair snares, camera traps, live traps, and Global Positioning System (GPS) collars. From these data, we estimated lynx density with 2 linearly-scaled count methods, 1 spatial mark-recapture method, 3 spatial mark-resight methods, and 1 cumulative-time method. We found up to 5-fold variation in point density estimates despite adhering to method requirements and assumptions in a manner consistent with other studies. Our results highlight the dependency of density estimates on sampling process and model assumptions and demonstrate the value of careful and unbiased sampling design. Further research is needed to fully assess the accuracy and limitations of the many wildlife density estimation methods that are currently in use so that techniques can be appropriately applied to typical study systems and species.
DOI: 10.21227/05eq-p940
title: The feature maps comes from convolution neural networks before convolution operation

description: The feature map from convolution neural networks
DOI: 10.6084/m9.figshare.14478372
title: Additional file 1 of Consumption of meals prepared away from home is associated with inadequacy of dietary fiber, vitamin C and mineral intake among Japanese adults: analysis from the 2015 National Health and Nutrition Survey

description: Additional file 1.
DOI: 10.6084/m9.figshare.14478372.v1
title: Additional file 1 of Consumption of meals prepared away from home is associated with inadequacy of dietary fiber, vitamin C and mineral intake among Japanese adults: analysis from the 2015 National Health and Nutrition Survey

description: Additional file 1.
DOI: 10.6084/m9.figshare.14478417
title: Additional file 2 of Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment

description: Additional file 2. Log-fold change and adjusted p-values for all genes using Wild-type condition as control.
DOI: 10.6084/m9.figshare.14478417.v1
title: Additional file 2 of Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment

description: Additional file 2. Log-fold change and adjusted p-values for all genes using Wild-type condition as control.
DOI: 10.6084/m9.figshare.14478420
title: Additional file 3 of Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment

description: Additional file 3. Normalized gene expression values for all genes in all replicates.
DOI: 10.6084/m9.figshare.14478420.v1
title: Additional file 3 of Combination of subtherapeutic anti-TNF dose with dasatinib restores clinical and molecular arthritogenic profiles better than standard anti-TNF treatment

description: Additional file 3. Normalized gene expression values for all genes in all replicates.
DOI: 10.6084/m9.figshare.14478422.v1
title: Additional file 2 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 2: Table S1. Randomization of G4 ChIP-seq peaks different workspaces contrasted to TF ChIP-seq peaks from ENCODE for K562 cells.
DOI: 10.6084/m9.figshare.14478425
title: Additional file 3 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 3: Table S2. Randomization of G4 ChIP-seq peaks different workspaces contrasted to TF ChIP-seq peaks from ENCODE for HepG2 cells.
DOI: 10.6084/m9.figshare.14478428
title: Additional file 4 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 4: Table S3. Enrichment at G4 ChIP for TFs that have been mapped in both K562 and HepG2. The maximum enrichment was used if TFs have been mapped multiple times.
DOI: 10.6084/m9.figshare.14478422
title: Additional file 2 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 2: Table S1. Randomization of G4 ChIP-seq peaks different workspaces contrasted to TF ChIP-seq peaks from ENCODE for K562 cells.
DOI: 10.6084/m9.figshare.14478431
title: Additional file 5 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 5: Table S4. Randomization of control sites (potential G4, open chromatin, promoter&5’UTR, no endogenous G4) in open chromatin. Genomic associations of endogenous and control sites are contrasted for K562 cells.
DOI: 10.6084/m9.figshare.14478425.v1
title: Additional file 3 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 3: Table S2. Randomization of G4 ChIP-seq peaks different workspaces contrasted to TF ChIP-seq peaks from ENCODE for HepG2 cells.
DOI: 10.6084/m9.figshare.14478428.v1
title: Additional file 4 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 4: Table S3. Enrichment at G4 ChIP for TFs that have been mapped in both K562 and HepG2. The maximum enrichment was used if TFs have been mapped multiple times.
DOI: 10.6084/m9.figshare.14478434.v1
title: Additional file 6 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 6: Table S5. Randomization of predicted consensus dsDNA binding sites (from JASPAR) or endogenous G4s in promoters / open chromatin promoters. Enrichment at TF chromatin binding sites is contrasted for K562 cells.
DOI: 10.6084/m9.figshare.14478431.v1
title: Additional file 5 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 5: Table S4. Randomization of control sites (potential G4, open chromatin, promoter&5’UTR, no endogenous G4) in open chromatin. Genomic associations of endogenous and control sites are contrasted for K562 cells.
DOI: 10.6084/m9.figshare.14478434
title: Additional file 6 of G-quadruplexes are transcription factor binding hubs in human chromatin

description: Additional file 6: Table S5. Randomization of predicted consensus dsDNA binding sites (from JASPAR) or endogenous G4s in promoters / open chromatin promoters. Enrichment at TF chromatin binding sites is contrasted for K562 cells.
DOI: 10.6084/m9.figshare.14478468
title: Additional file 2 of Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8

description: Additional file 2. list of sORF peptides defined from Rib-seq analyses.
DOI: 10.6084/m9.figshare.14478468.v1
title: Additional file 2 of Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8

description: Additional file 2. list of sORF peptides defined from Rib-seq analyses.
DOI: 10.6084/m9.figshare.14478471
title: Additional file 3 of Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8

description: Additional file 3. Normalized RNA-seq values from S2 cells.
DOI: 10.6084/m9.figshare.14478474
title: Additional file 4 of Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8

description: Additional file 4. Protein ANalysis THrough Evolutionary Relationships (PANTHER) Overrepresentation Test.
DOI: 10.6084/m9.figshare.14478471.v1
title: Additional file 3 of Drosophila primary microRNA-8 encodes a microRNA-encoded peptide acting in parallel of miR-8

description: Additional file 3. Normalized RNA-seq values from S2 cells.
DOI: 10.6084/m9.figshare.14478536
title: Additional file 1 of Genetic mechanisms and correlated risk factors of antimicrobial-resistant ESKAPEE pathogens isolated in a tertiary hospital in Malaysia

description: Additional file 1. PCR primers and conditions used for the identification of ESKAPEE strains (Table S1) and the characterization of AMR genes profile of each bacterial species (Table S2), detailed AMR features of the ESKAPEE strains (Table S3-S9), and QRDR mutations and qnr genotypes of ciprofloxacin non-susceptible E. coli strains (Table S10).
DOI: 10.6084/m9.figshare.14478536.v1
title: Additional file 1 of Genetic mechanisms and correlated risk factors of antimicrobial-resistant ESKAPEE pathogens isolated in a tertiary hospital in Malaysia

description: Additional file 1. PCR primers and conditions used for the identification of ESKAPEE strains (Table S1) and the characterization of AMR genes profile of each bacterial species (Table S2), detailed AMR features of the ESKAPEE strains (Table S3-S9), and QRDR mutations and qnr genotypes of ciprofloxacin non-susceptible E. coli strains (Table S10).
DOI: 10.6084/m9.figshare.14478557.v1
title: Additional file 6 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 6: Table S4. List of SRA accessions corresponding to RNA-Seq data sets for Cydia pomonella.
DOI: 10.6084/m9.figshare.14478548
title: Additional file 3 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 3: Table S1. List of terminal taxa and corresponding bioactivity data used in this study.
DOI: 10.6084/m9.figshare.14478551
title: Additional file 4 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 4: Table S2. List of terminal taxa and corresponding GenBank accession numbers used in this study.
DOI: 10.6084/m9.figshare.14478554.v1
title: Additional file 5 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 5: Table S3. List of species represented in the FAD phylogeny.
DOI: 10.6084/m9.figshare.14478554
title: Additional file 5 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 5: Table S3. List of species represented in the FAD phylogeny.
DOI: 10.6084/m9.figshare.14478557
title: Additional file 6 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 6: Table S4. List of SRA accessions corresponding to RNA-Seq data sets for Cydia pomonella.
DOI: 10.6084/m9.figshare.14478560
title: Additional file 7 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 7: Table S5. Primer sequences used for amplification and cloning of desaturase genes.
DOI: 10.6084/m9.figshare.14478560.v1
title: Additional file 7 of Evolution of the codling moth pheromone via an ancient gene duplication

description: Additional file 7: Table S5. Primer sequences used for amplification and cloning of desaturase genes.
DOI: 10.6084/m9.figshare.14478563
title: Additional file 1 of Correction to: Identifying resting locations of a small elusive forest carnivore using a two-stage model accounting for GPS measurement error and hidden behavioral states

description: Additional file 2. Complete R and Stan code for reproducing the statistical analyses in this manuscript.
DOI: 10.6084/m9.figshare.14478563.v1
title: Additional file 1 of Correction to: Identifying resting locations of a small elusive forest carnivore using a two-stage model accounting for GPS measurement error and hidden behavioral states

description: Additional file 2. Complete R and Stan code for reproducing the statistical analyses in this manuscript.
DOI: 10.6084/m9.figshare.14478569
title: Additional file 2 of Application of systems biology-based in silico tools to optimize treatment strategy identification in Still’s disease

description: Additional file 2: Supplementary tables. Includes from Supplementary Table S1 to S10. Contains information on scientific literature-based disease and drugs characterization, summary of information included in the truth table, list of publicly available gene expression datasets used for results contextualization and validation, results from the analysis of these datasets and bibliographic information supporting the interactions within the predicted mechanisms of action.
DOI: 10.6084/m9.figshare.14478569.v1
title: Additional file 2 of Application of systems biology-based in silico tools to optimize treatment strategy identification in Still’s disease

description: Additional file 2: Supplementary tables. Includes from Supplementary Table S1 to S10. Contains information on scientific literature-based disease and drugs characterization, summary of information included in the truth table, list of publicly available gene expression datasets used for results contextualization and validation, results from the analysis of these datasets and bibliographic information supporting the interactions within the predicted mechanisms of action.
DOI: 10.6084/m9.figshare.14478573.v1
title: Additional file 1 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 1: Table S1. Identification of SNPs in vasc1–1.
DOI: 10.6084/m9.figshare.14478579
title: Additional file 3 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 3: Table S3. Statistical analysis of LCM-RNAseq data from three different types of vascular bundles and parenchyma tissue in wild-type plants.
DOI: 10.6084/m9.figshare.14478573
title: Additional file 1 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 1: Table S1. Identification of SNPs in vasc1–1.
DOI: 10.6084/m9.figshare.14478582.v1
title: Additional file 4 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 4: Table S4. Statistical analysis of genes expression level in all vascular bundles compared to parenchyma.
DOI: 10.6084/m9.figshare.14478588.v1
title: Additional file 6 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 6; Table S6. Microarray data: Differentially expressed genes in homozygous vasc1–1 versus heterozygous vasc1–1
DOI: 10.6084/m9.figshare.14478585.v1
title: Additional file 5 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 5: Table S5. Co-expressed genes with BdERECTA.
DOI: 10.6084/m9.figshare.14478585
title: Additional file 5 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 5: Table S5. Co-expressed genes with BdERECTA.
DOI: 10.6084/m9.figshare.14478588
title: Additional file 6 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 6; Table S6. Microarray data: Differentially expressed genes in homozygous vasc1–1 versus heterozygous vasc1–1
DOI: 10.6084/m9.figshare.14478579.v1
title: Additional file 3 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 3: Table S3. Statistical analysis of LCM-RNAseq data from three different types of vascular bundles and parenchyma tissue in wild-type plants.
DOI: 10.6084/m9.figshare.14478582
title: Additional file 4 of BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon

description: Additional file 4: Table S4. Statistical analysis of genes expression level in all vascular bundles compared to parenchyma.
DOI: 10.6084/m9.figshare.14478674
title: Additional file 1 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 1. Learning set.
DOI: 10.6084/m9.figshare.14478674.v1
title: Additional file 1 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 1. Learning set.
DOI: 10.6084/m9.figshare.14478677
title: Additional file 2 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 2. Verification set.
DOI: 10.6084/m9.figshare.14478680.v1
title: Additional file 3 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 3. 186 DERs were reduced to 23 RNAs on the basis of 210 patients in the learning set.
DOI: 10.6084/m9.figshare.14478677.v1
title: Additional file 2 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 2. Verification set.
DOI: 10.6084/m9.figshare.14478689
title: Additional file 6 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 6. Risk score and risk status for each sample in Learning set.
DOI: 10.6084/m9.figshare.14478698
title: Additional file 9 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 9. Metascape Analysis result.
DOI: 10.6084/m9.figshare.14478692
title: Additional file 7 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 7. Risk score and risk status for each sample in Verification set.
DOI: 10.6084/m9.figshare.14478680
title: Additional file 3 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 3. 186 DERs were reduced to 23 RNAs on the basis of 210 patients in the learning set.
DOI: 10.6084/m9.figshare.14478692.v1
title: Additional file 7 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 7. Risk score and risk status for each sample in Verification set.
DOI: 10.6084/m9.figshare.14478698.v1
title: Additional file 9 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 9. Metascape Analysis result.
DOI: 10.6084/m9.figshare.14478689.v1
title: Additional file 6 of A genomic-clinicopathologic Nomogram for the preoperative prediction of lymph node metastasis in gastric cancer

description: Additional file 6. Risk score and risk status for each sample in Learning set.
DOI: 10.6084/m9.figshare.14478759
title: Additional file 13 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 13: Table S5. Summary of loss-of-function alleles in terms of their genomic positions, associated genes, types, allele sequences, allele frequencies and locations in gene bodies.
DOI: 10.6084/m9.figshare.14478759.v1
title: Additional file 13 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 13: Table S5. Summary of loss-of-function alleles in terms of their genomic positions, associated genes, types, allele sequences, allele frequencies and locations in gene bodies.
DOI: 10.6084/m9.figshare.14478777
title: Additional file 19 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 19: Table S6. Summary of candidate genes assigned to the most differentiated polymorphic short tandem repeats (pSTRs) between domestic and wild boars in Asia and Europe. The description of the function of these genes is based on the annotation entries of GO and KEGG.
DOI: 10.6084/m9.figshare.14478777.v1
title: Additional file 19 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 19: Table S6. Summary of candidate genes assigned to the most differentiated polymorphic short tandem repeats (pSTRs) between domestic and wild boars in Asia and Europe. The description of the function of these genes is based on the annotation entries of GO and KEGG.
DOI: 10.6084/m9.figshare.14478780
title: Additional file 1 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 1: Table S1. Detailed information on the 394 samples investigated in this study.
DOI: 10.6084/m9.figshare.14478783
title: Additional file 20 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 20: Table S7. Summary of polymorphic short tandem repeats (pSTRs) showing significant differentiation between domestic pigs and wild boars in Asia or Europe that were annotated as LOF pSTRs, expanded pSTRs, or showing greater differentiation than SNPs within ± 100 kb flanking regions.
DOI: 10.6084/m9.figshare.14478780.v1
title: Additional file 1 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 1: Table S1. Detailed information on the 394 samples investigated in this study.
DOI: 10.6084/m9.figshare.14478783.v1
title: Additional file 20 of A worldwide map of swine short tandem repeats and their associations with evolutionary and environmental adaptations

description: Additional file 20: Table S7. Summary of polymorphic short tandem repeats (pSTRs) showing significant differentiation between domestic pigs and wild boars in Asia or Europe that were annotated as LOF pSTRs, expanded pSTRs, or showing greater differentiation than SNPs within ± 100 kb flanking regions.