cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1380892.10fu
title: SH1380892.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380893.10fu
title: SH1380893.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380898.10fu
title: SH1380898.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.17026/dans-xkg-s2vg
title: Breda Cadettenkamp, Inventariserend veldonderzoek door middel van proefsleuven
title: Erfgoedrapport Breda 35

description: &lt;p&gt;Tijdens het inventariserend veldonderzoek zijn er geen resten van de verwachte linie gevonden. Ook is er geen vuursteenmateriaal uit de prehistorie aangetroffen. Wel was er in de werkput een flinke kuil aanwezig, waarvan de functie niet duidelijk was. Aan de hand van de vondsten kan gezegd worden dat de kuil in de 19e-20e eeuw is gegraven en dat deze kuil op een natuurlijke wijze is dichtgegaan. Door de stuifzandlaag bovenop de kuil was deze in eerste instantie moeilijk te herkennen. Naast de kuil zijn er twee aangepunte houten palen aangetroffen die vermoedelijk in de grond waren geslagen. De functie van deze palen was onduidelijk. Het veldonderzoek heeft alleen sporen en vondsten uit de nieuwe tijd C opgeleverd.&lt;/p&gt;
description: &lt;p&gt;Erfgoedrapport Breda 35&lt;/p&gt;
description: Toevoeging van geconverteerde GIS-data uit het originele ArcheoLink APR-bestand.
DOI: 10.15156/bio/sh1380902.10fu
title: SH1380902.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1380903.10fu
title: SH1380903.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.3xte58
title: Occurrence Download

description: A dataset containing 5071532 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "DatasetKey is one of (African Plants - a photo guide, iNaturalist Research-grade Observations)"
 ]
}

 The dataset includes 5071532 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005760-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/h6b36vt4st
title: X-ray diffraction data of adhesive tapes for the top dusted sample preparation method

description: The top-dusted method is one approach to prepare small-volume powder samples for the X-ray diffraction analysis in a Bragg-Brentano setup. Typically, a carrier material and an adhesion promoter are used. Instead, adhesive tapes can be used, combining the function of the carrier material and adhesion promoter. When selecting an adhesive tape, a priory knowledge of the background signal caused by the adhesive tape is not possible based solely on data sheets. Therefore, the X-ray diffraction behavior of commercially available adhesive film tapes for office and packing applications is studied. The diffractograms are provided in this data set. This enables XRD users to choose an adhesive tape for the top-dusted method best suiting their purpose. For the sake of comparison, the diffractograms of a deep well PMMA sample holder, a zero background sample holder (with and without vaseline as adhesion promoter), and a microscopy glass slide are provided.

The data correspond to a publication entitled : “Top dusted adhesive tape sample preparation method for the X-ray diffraction (XRD) analysis of small powder sample volumes with the Bragg-Brentano setup”.
DOI: 10.6084/m9.figshare.25977355.v1
title: <i>Leptothrix ochracea</i> metabolic models flux balance analysis tables

description: Stoichiometric metabolic models of <i>Leptothrix ochracea</i> were generated using the ModelSEED tools in KBase. We evaluated which organic carbon compounds were used for energy and biomass generation <i>in silico</i> and flux through the metabolic network demonstrated that models on several organic carbon sources were able to generate both energy and biomass.
DOI: 10.6084/m9.figshare.7331045.v1
title: Hydroperiod data

description: These data were developed by Se-Yeun Lee at the Climate Impacts Group at the University of Washington. These data are simulated estimates of daily wetland water levels ( where the column "simulated" is the percentage of the maximum water level) from 1915 to 2006 for breeding wetlands of Rana cascadae in two regions of Olympic National Park, and were based on climate data derived from the Variable Infiltration Capacity model. Files ending in "_sim" are for the historical time period (1915-2006), files ending in "_cc" are for the same time series (1915-2006) perturbed to reflect conditions in the 2080s under the A1B climate scenario, and files ending in "_cc_2040s" are perturbed to reflect the 2040s under the A1B climate scenario. See Kissel et al. 2018 or Lee et al. 2015 (https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0136385) for further details. <br>
DOI: 10.6084/m9.figshare.14494536.v1
title: Dataset S2_MAGs_Prokka_ORFs_ADDITIONAL_SAMPLES

description: Contains fasta files that represent MAGs reconstructed from enrichment experiments using 20 additional human fecal samples (SXX). Each MAG file contains predicted genes (amino acid sequences) as well as annotated gene function.<br>
DOI: 10.6084/m9.figshare.12173736.v1
title: Supplementary Material for: Recombinant Cellular Repressor of E1A-Stimulated Genes Protects against Renal Fibrosis in Dahl Salt-Sensitive Rats

description: <b><i>Background:</i></b> Human cellular repressor of E1A-stimulated genes (CREG) is a secreted glycoprotein that attenuates angiotensin II-induced hypertension, alleviates myocardial fibrosis, and improves heart function. However, the role of CREG in high-salt (HS) diet-induced hypertensive nephropathy is unclear. <b><i>Methods:</i></b> To determine the effects and molecular mechanisms of CREG in HS diet-induced hypertensive nephropathy, we established a hypertensive nephropathy animal model in Dahl salt-sensitive (SS) rats fed a HS diet (8% NaCl, <i>n</i> = 20) for 8 weeks. At week 4 of HS loading, these rats were administered recombinant CREG (reCREG; 35 µg/kg·day, <i>n</i> = 5) and saline (<i>n</i> = 5) via subcutaneously implanted pumps and were also administered the vasodilator hydralazine (20 mg/kg·day, <i>n</i> = 5) in drinking water. We used hematoxylin and eosin staining, Masson’s trichrome staining, immunohistochemical labeling, western blotting, RT-PCR, and Tunel staining to determine the signaling pathways of CREG in HS diet-induced hypertensive nephropathy. <b><i>Results:</i></b> After 8 weeks of HS intake, the Dahl SS rats developed renal dysfunction and severe renal fibrosis associated with reductions of 78 and 67% in CREG expression, respectively, at both mRNA and protein levels in the kidney. Administration of reCREG improved renal function and relieved renal fibrosis. Administration of CREG also inhibited monocyte infiltration and reduced apoptosis in the kidney cells. CREG overexpression upregulated forkhead box P1 expression and inhibited the transforming growth factor-β1 signaling pathway. <b><i>Conclusion:</i></b> Our study shows that CREG protected the kidney against HS-diet-induced renal damage and provides new insights into the mechanisms underlying kidney injury.
DOI: 10.6084/m9.figshare.26067067.v2
title: Combined Features-Train14feb20224.csv

description: This dataset is extracted from the Global Terrorism Database (GTD), which is widely recognized for its comprehensive collection of terrorism-related incidents. We utilized this dataset to Train and Test our model, leveraging the extensive and detailed information it provides on terrorist attacks worldwide. The GTD includes variables such as incident date, location, perpetrators, targets, and attack types, allowing for a robust training set to improve the accuracy and effectiveness of our predictive models.
DOI: 10.6084/m9.figshare.11874351.v1
title: Batch Experiment Dataframe

description: Dataframe containing data on Sulfolobus acidocaldarius growth rate. Data from Cobban 2020 characterization experiments. Growth Curves are in an ordered text list with OD600 and sampling times seperated by a "/". RI is calculated including all GDGT's. Growth rates calculated with a custom script described in more detail elsewhere
DOI: 10.6084/m9.figshare.12886826.v1
title: Supplementary Material for: Associations between Cell-Free Mitochondrial DNA and Inflammation, and Their Clinical Implications for Patients on Hemodialysis: A Prospective Multicenter Cohort Study

description: <b><i>Background:</i></b> Cell-free mitochondrial DNA (cf-mtDNA) has recently been in the spotlight as an endogenously produced danger molecule that can potentially elicit inflammation. However, its clinical and prognostic implications are uncertain in patients undergoing hemodialysis. <b><i>Methods:</i></b> We examined the association of baseline cf-mtDNA categorized as tertiles with health-related quality of life (HRQOL), inflammatory cytokines, and mortality in a multicenter prospective cohort of 334 patients on hemodialysis. To better understand cf-mtDNA-mediated inflammation, we measured cytokine production after in vitro stimulation of bone marrow-derived macrophages (BMDMs) with mtDNA. <b><i>Results:</i></b> The higher cf-mtDNA tertile had a longer dialysis vintage, a greater comorbidity burden, and increased levels of inflammatory markers, including high-sensitivity-C-reactive protein, tumor necrosis factor-alpha, CXCL16, and osteoprotegerin. In particular, mtDNA augmented inflammatory cytokine release from BMDMs by lipopolysaccharide, the levels of which are reported to be increased in hemodialysis patients. Although the patients with higher levels of cf-mtDNA generally had lower (poorer) scores for HRQOL, cf-mtDNA was not associated with all-cause mortality in hemodialysis patients. <b><i>Conclusion:</i></b> cf-mtDNA was correlated with poor clinical status and modestly associated with impaired quality of life in patients on hemodialysis. In proinflammatory milieu in end-stage renal disease, these associations may be attributed to the boosting effects of cf-mtDNA on inflammation.
DOI: 10.6084/m9.figshare.13302236.v1
title: Supplementary Material for: Gait Disorder among Elderly People, Psychomotor Disadaptation Syndrome: Post-Fall Syndrome, Risk Factors and Follow-Up – A Cohort Study of 70 Patients

description: <b><i>Introduction:</i></b> Falls among older people are a major health issue and the first cause of accidental death after 75 years of age. Post-fall syndrome (PFS) is commonly known and yet poorly studied. <b><i>Objective:</i></b> Identify risk factors for PFS and do a follow-up 1 year later. <b><i>Methods:</i></b> We included all patients over 70 years of age hospitalized after suffering a fall in a case-control study, and then followed them in a cohort study. PFS was retained in case of functional mobility decline (transferring, walking) occurring following a fall in the absence of an acute neurological, orthopedic or rheumatic pathology directly responsible for the decline. The data initially collected were: clinical (anamnestic, emergency and departmental/ward evolution, medical history, lifestyle, treatments, clinical examination items); and imaging if the patient had been subjected to brain imaging in the last 3 years prior to inclusion. Regarding the follow-up at 1 year, we collected from the general physician the occurrence and the characteristics of new falls, functional mobility assessment, hospitalization and death. <b><i>Results:</i></b> Inclusion took place from March 29, 2016 to June 7, 2016 and follow-up until June 30, 2017. We included 70 patients. A total of 29 patients exhibited a PFS (41.4 %). Risk factors for PFS included age, walking disorder prior to the fall, the use of a walking aid prior to the fall, no unaccompanied outdoor walk in the week before the fall, visual impairment making close reading impossible, stiffness in ankle dorsiflexion, grip strength and the fear of falling. Among patients with PFS, 52.9% could still perform a transfer at 1 year and 64.7% could still walk against 80.7% and 85.2%, respectively, for patients without PFS. <b><i>Conclusion:</i></b> The study showed the existence of body functions/structure impairments and activity limitations prior to the fall among patients exhibiting a PFS. This suggests the existence of a pre-fall syndrome, i.e., a psychomotor disadaptation syndrome existing prior to the fall. Among the 8 risk factors, fear of falling, vision impairment and muscle strength could be targeted for improvement. The diagnosis of PFS could be a marker of loss of functional mobility at 1 year.
DOI: 10.6084/m9.figshare.1387731.v1
title: S3 Dataset Production and Fertility

description: Supporting information for Table 2: Feed intake, milk production, milk gross composition and fertility indicators on dairy farms with organic production system (ORG) and short-term (ORG-SG) or long-term grassland management (ORG-LG) and dairy farms with conventional production system (CON) and short-term (CON-SG) or long-term grassland management (CON-LG)
DOI: 10.6084/m9.figshare.19524898.v1
title: Adrb1 Knockout Zebrafish Supporting Data.xlsx

description: Supporting data for Joyce et al. "The regulation of heart rate following genetic deletion of the ß1 adrenergic receptor in larval zebrafish"
DOI: 10.6084/m9.figshare.14534067.v2
title: Data for article: "ADAQ: Automatic workflows for magneto-optical properties of point defects in semiconductors"

description: The SQLite database containing data for the silicon vacancy configurations presented in the paper "ADAQ: Automatic workflows for magneto-optical properties of point defects in semiconductors".<br>Here is a guide to where to find the data in the SQLite database used to make the figures and tables resented in the ADAQ paper:*Data for Figure 6 is found under multiple tables. The host supercell energy is found in table HostSuperCellResult, column total_energy. The defect supercell energy is found in table GroundStateResults under column total_energy. The chemical potentials are found in table ChemicalPotential. The charge transition levels are found in table ChargeTransitionLevels.*Data for Figure 7 is found under table TransitionResult. The x-axis data is the column transition_energy, and the y-axis data is the column transition_intensity squared. Column transition shows if it is bound-to-bound, free-to-bound, or bound-to-free. Column step shows which part of the excitation cycle (abs,ex1,ex2,ems).*Data for Figure 8 is found under table BandData with the underlying table for eigenvalues and IPR.*Data for Table I is found under TransitionResult.*Data for Table II is found under HyperFineParameters.*Data for Table III is found under ZeroFieldSplitting.*Data for Table IV is found under ScreenResult.<br>The TransitionResult table is also saved as a CSV file.<br>The generated VASP output files from both the screening and full characterization workflow are also presented. This output is generated by ADAQ and httk. For more info about ADAQ: https://httk.org/adaq/.
DOI: 10.6084/m9.figshare.1293651.v1
title: #Ferguson1.22-1.23.xlsx

description: Twitter data on #Ferguson. See Project Descritpion for details.
DOI: 10.6084/m9.figshare.20764858.v1
title: Basaltic Plinian eruptions at Las Sierras-Masaya volcano driven by cool storage of crystal-rich magmas

description: Supplementary datasets 1-5 and code for the numerical conduit model. The magma ascent model used in this study has been adapted from the MAMMA model available on GitHub: https://github.com/demichie/MAMMA. The main author of the code is Mattia de’ Michieli Vitturi. This version of the code has been developed by Giuseppe La Spina and Emily Bamber.
DOI: 10.17632/w3vfsxr6zg
title: Data for: The decline of the labor income share in Mexico, 1990-2015

description: 1) Data for the figures; 2) Sources-and-methods appendix; and 3) Theoretical model underlying the analysis in the paper.
DOI: 10.6084/m9.figshare.22067054.v1
title: Data and Codes for Reinforcement learning establishes a minimal metacognitive process to monitor and control motor learning performance

description: Estimated motor memory during visuomotor learning and codes for simulations
DOI: 10.6084/m9.figshare.24629751.v1
title: Improved genome assembly (v8) and annotation of <i>Pungitius pungitius</i>

description: This contains improved genome assembly (v8), annotation, and repeats masked assembly of nine-spined stickleback.
DOI: 10.6084/m9.figshare.4543021.v1
title: Supplementary Material for: Interleukin-17A Promotes Arginase-1 Production and 2,4-Dinitrochlorobenzene-Induced Acute Hyperinflammation in Human Papillomavirus E7 Oncoprotein-Expressing Skin

description: Human papillomaviruses (HPVs) have evoked numerous mechanisms to subvert host innate immunity and establish a local immunosuppressive environment to facilitate persistent virus infection. Topical application of 2,4-dinitrochlorobenzene (DNCB) was speculated to overcome this immunosuppressive environment and was employed in the immunotherapy of HPV-associated lesions. We have previously shown that DNCB treatment of skin expressing HPV16.E7 protein, the major oncogenic protein expressed in HPV-associated premalignant cervical epithelium, results in a hyperinflammatory response, with an associated induction of Th2 cytokines and infiltration of myeloid cells producing arginase-1, which also contributes to the hyperinflammation. However, the molecular mechanisms underlying arginase-1 induction and arginase-mediated hyperinflammation in K14.E7 skin have not been elucidated. Here, we show that HPV16.E7 protein expression as a transgene in skin is associated with enhanced IL-17A production by macrophages exposed to DNCB. Interestingly, induction of arginase-1 by DNCB is not seen in K14.E7 animals unable to express IL-17A. Further, blockade of either IL-17A or arginase activity alleviates DNCB-induced hyperinflammation through reduced recruitment of neutrophils, as a consequence of decreased CXCL1 and CXCL5 chemokine production. Thus, our findings suggest that increased IL-17A expression by macrophages in E7-expressing skin exposed to DNCB promotes arginase-1 induction and contributes directly to the observed hyperinflammation.
DOI: 10.6084/m9.figshare.21202499.v2
title: Understanding the use of peers for mental health care: A meta-synthesis of qualitative evidence

description: Supplementary files associated with " Ahmad I, Hanif M, Waqas A, Suleman N, Atif N, Bibi A, Zulfiqar S, Khan A, Ali B, Kayani SS, Khan SA, Sikander S. Understanding the use of peers for mental health care: A meta-synthesis of qualitative evidence. 2022. f1000research."
DOI: 10.6084/m9.figshare.3467711.v3
title: Self-centeredness, selflessness and happiness: data2016

description: Data of the paper titled "Self-Centeredness and Selflessness: Happiness Correlates and Mediating Psychological Processes"Study 1 and study 2.<br>