cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sjkwrq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ponticola kessleri",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056907-250717081556266/datasets/export for details.
DOI: 10.15468/dl.fjkt28
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Albania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056908-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sqqvsq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056909-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3xbw2v
title: Occurrence Download

description: A dataset containing 846940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Icteria virens)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 846940 records from 127 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056881-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpaqpz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hylocereus undatus",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056910-250717081556266/datasets/export for details.
DOI: 10.15468/dl.4uj3hy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ponticola kessleri",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056911-250717081556266/datasets/export for details.
DOI: 10.15468/dl.meg5jx
title: Occurrence Download

description: A dataset containing 783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 783 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056912-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6bcpmr
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 186 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056915-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9ahgjn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crotalaria anagyroides",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056916-250717081556266/datasets/export for details.
DOI: 10.15468/dl.sgfd4r
title: Occurrence Download

description: A dataset containing 129 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 129 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056914-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5p58q
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctium minus",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 79 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056917-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktek35
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056918-250717081556266/datasets/export for details.
DOI: 10.15468/dl.h32398
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056919-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15916712
title: Synthetic 10-Hour Traffic Simulations for Central Athens (Train/Test/Rain)

description: This release provides 3 CSV trace files containing Floating Car Data (FCD) from 10-hour microscopic traffic simulations of central Athens, generated with the SUMO (Simulation of Urban MObility) toolkit.

Each simulation reflects distinct conditions and configurations.



train-fcd.csv - Training simulation on the base network

test-fcd.csv - Test simulation on the base network

rain-fcd.csv - Simulation on the rain-modified network (with reduced friction on all lanes)


The output contains is organized by timestep and for each vehicle that is in the simulation at that timestep a row of its id, x, y, speed, lane, odometer, fuel, and waiting time is logged.

Each simulation has a duration of 10 hours, spanning from morning to afternoon. There is a traffic pattern applied, with morning and afternoon peaks and lower mid-day activity. This traffic pattern is described by a list of per-hour traffic generation periods. On that list, some noise is added for each simulation, using a different random seed for each one. The same random seed is also used together with the traffic generation periods to generate the random trips used for each simulation. The goal was to introduce realistic variability, without going completely off a common traffic pattern.

For the generation of this synthetic dataset, the following tools were used.



osmGet – Extract OpenStreetMap data from a bounding box over central Athens

osmBuild – Convert OSM data into a SUMO-compatible network

randomTrips – Generate random trips based on per-hour traffic generation periods

sumo – Run the microscopic simulation and export FCD data
DOI: 10.15468/dl.934428
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 198 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056922-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b8jrp6
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctium minus",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056920-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29651828
title: Sourca datasets (numerical values) used to construct all graphs in the publication

description: AbstractThe safe and effective application of human pluripotent stem cells (hPSCs) in research and regenerative medicine requires precise control over pluripotency and cell fate. Pluripotency is characterized by high levels of histone acetylation and aerobic glycolysis, while differentiation is associated with metabolic shifts and reduced histone acetylation. These transitions are driven, in part, by the availability of metabolic substrates that influence epigenetic regulation. A central enzyme in this process is pyruvate dehydrogenase (PDH), which converts glycolytic pyruvate into acetyl coenzyme A (Ac-CoA), the essential donor for histone acetylation.Here, we investigate how PDH activity regulates histone acetylation and pluripotency maintenance under physiologically relevant oxygen conditions (5% and 21% O₂), in response to FGF2 signaling and changes in reactive oxygen species (ROS). We show that active PDH promotes global histone H3 acetylation and upregulates the expression of the key pluripotency factor <i>NANOG</i>, specifically under 5% O₂. Mechanistically, we identify a novel FGF2–MEK1/2–ERK1/2–ROS axis that modulates PDH activity via redox-dependent regulation. Notably, this effect is oxygen-sensitive and absent at atmospheric oxygen levels (21% O₂).Our findings position PDH as a redox-sensitive metabolic switch that connects energy metabolism with epigenetic control of pluripotency by regulating Ac-CoA availability. This work highlights the critical role of oxygen tension, ROS homeostasis, and growth factor signaling in shaping the metabolic–epigenetic landscape of hPSCs, with implications for optimizing stem cell culture and differentiation protocols.
DOI: 10.6084/m9.figshare.29651828.v1
title: Sourca datasets (numerical values) used to construct all graphs in the publicaiton

description: The safe and effective application of human pluripotent stem cells (hPSCs) in research and regenerative medicine requires precise control over pluripotency and cell fate. Pluripotency is characterized by high levels of histone acetylation and aerobic glycolysis, while differentiation is associated with metabolic shifts and reduced histone acetylation. These transitions are driven, in part, by the availability of metabolic substrates that influence epigenetic regulation. A central enzyme in this process is pyruvate dehydrogenase (PDH), which converts glycolytic pyruvate into acetyl coenzyme A (Ac-CoA), the essential donor for histone acetylation.Here, we investigate how PDH activity regulates histone acetylation and pluripotency maintenance under physiologically relevant oxygen conditions (5% and 21% O₂), in response to FGF2 signaling and changes in reactive oxygen species (ROS). We show that active PDH promotes global histone H3 acetylation and upregulates the expression of the key pluripotency factor <i>NANOG</i>, specifically under 5% O₂. Mechanistically, we identify a novel FGF2–MEK1/2–ERK1/2–ROS axis that modulates PDH activity via redox-dependent regulation. Notably, this effect is oxygen-sensitive and absent at atmospheric oxygen levels (21% O₂).Our findings position PDH as a redox-sensitive metabolic switch that connects energy metabolism with epigenetic control of pluripotency by regulating Ac-CoA availability. This work highlights the critical role of oxygen tension, ROS homeostasis, and growth factor signaling in shaping the metabolic–epigenetic landscape of hPSCs, with implications for optimizing stem cell culture and differentiation protocols.
DOI: 10.6084/m9.figshare.29651828.v2
title: Sourca datasets (numerical values) used to construct all graphs in the publication

description: AbstractThe safe and effective application of human pluripotent stem cells (hPSCs) in research and regenerative medicine requires precise control over pluripotency and cell fate. Pluripotency is characterized by high levels of histone acetylation and aerobic glycolysis, while differentiation is associated with metabolic shifts and reduced histone acetylation. These transitions are driven, in part, by the availability of metabolic substrates that influence epigenetic regulation. A central enzyme in this process is pyruvate dehydrogenase (PDH), which converts glycolytic pyruvate into acetyl coenzyme A (Ac-CoA), the essential donor for histone acetylation.Here, we investigate how PDH activity regulates histone acetylation and pluripotency maintenance under physiologically relevant oxygen conditions (5% and 21% O₂), in response to FGF2 signaling and changes in reactive oxygen species (ROS). We show that active PDH promotes global histone H3 acetylation and upregulates the expression of the key pluripotency factor <i>NANOG</i>, specifically under 5% O₂. Mechanistically, we identify a novel FGF2–MEK1/2–ERK1/2–ROS axis that modulates PDH activity via redox-dependent regulation. Notably, this effect is oxygen-sensitive and absent at atmospheric oxygen levels (21% O₂).Our findings position PDH as a redox-sensitive metabolic switch that connects energy metabolism with epigenetic control of pluripotency by regulating Ac-CoA availability. This work highlights the critical role of oxygen tension, ROS homeostasis, and growth factor signaling in shaping the metabolic–epigenetic landscape of hPSCs, with implications for optimizing stem cell culture and differentiation protocols.
DOI: 10.15468/dl.w2cp26
title: Occurrence Download

description: A dataset containing 569202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Icterus cucullatus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 569202 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056899-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cendwc
title: Occurrence Download

description: A dataset containing 434 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctium minus",
 "Country is New Zealand",
 "HasCoordinate is true"
 ]
}

 The dataset includes 434 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056921-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mw8z2f
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Bhutan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056923-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16501346
title: Quantum Formula of the Living Spirit at Low Frequency (QSLF)

description: Quantum Formula of the Living Spirit at Low Frequency (QSLF)
DOI: 10.5281/zenodo.16501347
title: Quantum Formula of the Living Spirit at Low Frequency (QSLF)

description: Quantum Formula of the Living Spirit at Low Frequency (QSLF)
DOI: 10.15468/dl.kq7rjk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056925-250717081556266/datasets/export for details.
DOI: 10.15468/dl.npyxeq
title: Occurrence Download

description: A dataset containing 215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 215 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056924-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dnpk4
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Lithuania",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056929-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b78xaj
title: Occurrence Download

description: A dataset containing 1328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctium minus",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1328 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056927-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5633bj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyptis pectinata",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056930-250717081556266/datasets/export for details.
DOI: 10.15468/dl.y8guj3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056931-250717081556266/datasets/export for details.
DOI: 10.15468/dl.ej7xrz
title: Occurrence Download

description: A dataset containing 7463 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arctium minus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7463 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056928-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8etg3d
title: Occurrence Download

description: A dataset containing 22547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22547 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056932-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3fccp
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ipomoea purpurea",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 304 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056933-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8b7mz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taxus baccata x cuspidata",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056934-250717081556266/datasets/export for details.
DOI: 10.15468/dl.2eu698
title: Occurrence Download

description: A dataset containing 11356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycium",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 11356 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056935-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4a4s9t
title: Occurrence Download

description: A dataset containing 1461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Juncus tenuis",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1461 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056936-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5wm1464f
title: MassIVE MSV000098651 - PPARG suppresses ferroptosis through PLA2G2F-mediated ER-localized lipid remodeling in bladder cancer
title: PPARG suppresses ferroptosis through PLA2G2F-mediated ER-localized lipid remodeling in bladder cancer
DOI: 10.5281/zenodo.10886791
title: Genomes of cactophilic Drosophila species and their respective gene and TE annotations + QC data

description: The genomes deposited in this repository refers to the data used in the study entitled "Transposable elements contribute to the evolution of host shift-related genes in cactophilic Drosophila species", from Oliveira D. S., Larue A., Nunes W. V. B., Sabot F., Bodelón A., García Guerreiro M. P., Vieira C., Carareto C. M. A.

Each genome has its following assembly (fasta), gene annotation (gff), and TE annotation (gtf). The quality control for the nanopore genomes can be accessed on QC_nanopore_genomes.zip, and the quality control for the RNA-seq data on QC_RNAseq.zip.

Additional files, as code and input files to reproduce the specific analysis of the manuscript, are also provided in the github repository: https://github.com/OliveiraDS-hub/Pipelines-Cactophilic-Drosophila-Species