cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26830249.v1
title: original data.zip

description: <i>Staphylococcus aureus </i>(<i>S. aureus</i>)<i> </i><i>nt5</i> gene, which encodes 5’-nucleotidase, is nearly unknown for its function in staphylococcal virulence and bacterial infection. In this study, we performed<i> nt5</i><sup>C166T</sup> gene mutation using a CRISPR RNA-guided base editing system, and further carried out transcriptome sequencing of the<i> </i>mutant strain to investigate the gene mutation response upon antibiotic daptomycin (DAP) exposure and its influence on bacterial virulence<i> in vitro</i> and <i>in vivo</i>. RNA sequencing showed that <i>nt5</i> inactivation inhibited bacterial nucleotide metabolism, and several nucleotide metabolism-related genes were significantly down-regulated in the mutant strain. The<i> </i>mutant strain enhanced tolerance to DAP treatment by attenuating cell membrane potential dissipation, slowing DNA release, and inhibiting nucleotide metabolism. Moreover, the <i>nt5</i> mutation alleviated the damage caused by bacterial infection in the kidney by reducing the expression of IL-β, IL-6 and IL-18 in mouse abscess models. Immune cells were more likely to swallow the mutant strain, which also led to lower bacterial toxicity of mutant<i> S. aureus </i>during the infection process. In summary, <i>nt5</i> mutation enhances the tolerance of <i>S. aureus</i> to antibiotics but impedes the bacterial infection capacity to form kidney abscesses by increasing<i> </i>bacterial phagocytosis by the host cell immune system <i>in vitro</i> and<i> in vivo</i>, which demonstrates <i>nt5</i> gene facilitates bacterial virulence and immune evasion in <i>S. aureus </i>pathogenesis.
DOI: 10.1594/pangaea.834803
title: Gene expression of the Antarctic krill Euphausia superba under different hypoxia intensities
DOI: 10.1594/pangaea.834802
title: Biochemical processing of the Antarctic krill Euphausia superba under different hypoxia intensities
DOI: 10.1594/pangaea.810228
title: (Table 4) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-847B
DOI: 10.1594/pangaea.810232
title: (Table 8) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-851B
DOI: 10.1594/pangaea.810234
title: (Table 10) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-854B
DOI: 10.1594/pangaea.810227
title: (Table 3) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-844B
DOI: 10.1594/pangaea.834806
title: (Figure 1) Lactate concentration in in situ organisms
DOI: 10.1594/pangaea.777387
title: Global distributions of pteropods (Gymnosomata, Thecosomata, Pseudothecosomata) abundance and biomass - Gridded data product (NetCDF) - Contribution to the MAREDAT World Ocean Atlas of Plankton Functional Types

description: Pteropods are a group of holoplanktonic gastropods for which global biomass distribution patterns remain poorly resolved. The aim of this study was to collect and synthesize existing pteropod (Gymnosomata, Thecosomata and Pseudothecosomata) abundance and biomass data, in order to evaluate the global distribution of pteropod carbon biomass, with a particular emphasis on its seasonal, temporal and vertical patterns. We collected 25 902 data points from several online databases and a number of scientific articles. The biomass data has been gridded onto a 360 x 180° grid, with a vertical resolution of 33 WOA depth levels. Data has been converted to NetCDF format. Data were collected between 1951-2010, with sampling depths ranging from 0-1000 m. Pteropod biomass data was either extracted directly or derived through converting abundance to biomass with pteropod specific length to weight conversions. In the Northern Hemisphere (NH) the data were distributed evenly throughout the year, whereas sampling in the Southern Hemisphere was biased towards the austral summer months. 86% of all biomass values were located in the NH, most (42%) within the latitudinal band of 30-50° N. The range of global biomass values spanned over three orders of magnitude, with a mean and median biomass concentration of 8.2 mg C l-1 (SD = 61.4) and 0.25 mg C l-1, respectively for all data points, and with a mean of 9.1 mg C l-1 (SD = 64.8) and a median of 0.25 mg C l-1 for non-zero biomass values. The highest mean and median biomass concentrations were located in the NH between 40-50° S (mean biomass: 68.8 mg C l-1 (SD = 213.4) median biomass: 2.5 mg C l-1) while, in the SH, they were within the 70-80° S latitudinal band (mean: 10.5 mg C l-1 (SD = 38.8) and median: 0.2 mg C l-1). Biomass values were lowest in the equatorial regions. A broad range of biomass concentrations was observed at all depths, with the biomass peak located in the surface layer (0-25 m) and values generally decreasing with depth. However, biomass peaks were located at different depths in different ocean basins: 0-25 m depth in the N Atlantic, 50-100 m in the Pacific, 100-200 m in the Arctic, 200-500 m in the Brazilian region and &gt;500 m in the Indo-Pacific region. Biomass in the NH was relatively invariant over the seasonal cycle, but more seasonally variable in the SH. The collected database provides a valuable tool for modellers for the study of ecosystem processes and global biogeochemical cycles.
description: The attached zip file contains raw data files submitted by the authors and a NetCDF file. Progressively, raw data will be imported into PANGAEA as distinct data publications related to the original sources (journal or data publications).
DOI: 10.1594/pangaea.810229
title: (Table 5) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-848B
DOI: 10.1594/pangaea.817652
title: (Table 3) Age, thickenss and Bouma Unitsofthe turbidites in Dakar Canyon sediment cores
DOI: 10.1594/pangaea.810231
title: (Table 7) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-850B
DOI: 10.1594/pangaea.708219
title: Sediment echosounding data files from the Amundsen Sea

description: The flow of ice streams, which account for most discharge from large ice sheets, is controlled by processes operating at their bed. Data from modern ice stream beds are difficult to obtain, but where ice advanced onto continental shelves during glacial periods extensive areas of the former bed can be imaged using modern swath sonar tools. We present new multibeam swath bathymetry data analyzed alongside sparse pre-existing data from the Amundsen Sea Embayment. The compilation is the most extensive, continuous area of multibeam data coverage yet obtained on the inner continental shelf of Antarctica. The data reveal streamlined subglacial bedforms that define a zone of paleo-ice stream convergence but, in contrast to previous models, do not show a simple down-flow progression of bedform types along paleo-ice stream troughs. We interpret high spatial variability of bedforms as indicating a complex mechanical and hydrodynamic regime at the former ice stream beds, consistent with observations from some modern ice streams. We conclude that care must be taken when using bedforms to infer paleo-ice stream velocities.
description: see also http://www.marine-geo.org/tools/search/DataSets.php?data_set_uids=9112,9126
description: Supplement to: Larter, Robert D; Graham, Alastair G C; Gohl, Karsten; Kuhn, Gerhard; Hillenbrand, Claus-Dieter; Smith, James A; Deen, Tara J; Livermore, Roy A; Schenke, Hans Werner (2009): Subglacial bedforms reveal complex basal regime in a zone of paleo-ice stream convergence, Amundsen Sea Embayment, West Antarctica. Geology, 37(5), 411-414
DOI: 10.1594/pangaea.810230
title: (Table 6) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-849B
DOI: 10.1594/pangaea.810233
title: (Table 9) Abundance of silicoflagellates and ebridians in selected samples from ODP Hole 138-852B
DOI: 10.1594/pangaea.820566
title: Abundance of pteropods Population of Limacina helicina antarctica in the Scotia Sea collected from 1996 to 2010
DOI: 10.15468/dl.gnsvy6
title: Occurrence Download

description: A dataset containing 36421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Xiphocolaptes promeropirhynchus (Lesson, 1840)"
 ]
}

 The dataset includes 36421 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0111143-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e226684
title: Remittance Cost - AML and FTRI

description: The Remittance Prices Worldwide data is divided into two groups –
Remittance Cost at the Sending Countries and Remittance Cost at the Receiving
Countries. For each group there are two dependent variables. FTRI data is
available for 147 countries over a 14-year period. Remittance Paid and Received
is available for 200 countries spanning 63 years. AML data is available for a
minimum of 110 countries in certain years, up to 162 countries, and for a
maximum period of 11 years. Names of the countries in different databases or
within a database over different years may be captured differently due to
geo-political reasons. Clean-up of such names is done to identify the
observation uniquely. For example, Republic of Korea is treated as South Korea,
Russian Federation or Soviet Union is treated as Russia, Ivory Coast is treated
as Côte d'Ivoire, Czcheia is treated as Zchec Republic, Siam is treated as
Thailand, the United States of America is treated as the United States and Türkiye
is treated as Turkey. Remittance prices data is treated as the base. The data
file is split into two datasets by using the ‘Sending Country’ and ‘Receiving
Country’ columns along with their respective remittance cost percentage value
columns. For each data file, the observations where the “Transparent"
value is 'No” are omitted. The data is organized in panel format in ascending
years and sorted alphabetically by country as a second-level sorting. The
observations are numbered, and a unique key is created by concatenating the year
and the serial number. A secondary key is created by concatenating “Year” and “_Country
Name”. In the Remittance Paid, Remittance Received, FTRI and AML Index data
files, a key same as ‘Secondary key’ is created by concatenating “Year” and
“_Country Name”. Using the common key,
the data is joined in each ‘Sending Country’ and ‘Receiving Country’ data files.
The combined data available for the study is from 2011 to 2023. Missing values
are not imputed in the panel data.
description: Smallest Geographic Unit: Global
description: other;
DOI: 10.3886/e226684v1
title: Remittance Cost - AML and FTRI

description: The Remittance Prices Worldwide data is divided into two groups –
Remittance Cost at the Sending Countries and Remittance Cost at the Receiving
Countries. For each group there are two dependent variables. FTRI data is
available for 147 countries over a 14-year period. Remittance Paid and Received
is available for 200 countries spanning 63 years. AML data is available for a
minimum of 110 countries in certain years, up to 162 countries, and for a
maximum period of 11 years. Names of the countries in different databases or
within a database over different years may be captured differently due to
geo-political reasons. Clean-up of such names is done to identify the
observation uniquely. For example, Republic of Korea is treated as South Korea,
Russian Federation or Soviet Union is treated as Russia, Ivory Coast is treated
as Côte d'Ivoire, Czcheia is treated as Zchec Republic, Siam is treated as
Thailand, the United States of America is treated as the United States and Türkiye
is treated as Turkey. Remittance prices data is treated as the base. The data
file is split into two datasets by using the ‘Sending Country’ and ‘Receiving
Country’ columns along with their respective remittance cost percentage value
columns. For each data file, the observations where the “Transparent"
value is 'No” are omitted. The data is organized in panel format in ascending
years and sorted alphabetically by country as a second-level sorting. The
observations are numbered, and a unique key is created by concatenating the year
and the serial number. A secondary key is created by concatenating “Year” and “_Country
Name”. In the Remittance Paid, Remittance Received, FTRI and AML Index data
files, a key same as ‘Secondary key’ is created by concatenating “Year” and
“_Country Name”. Using the common key,
the data is joined in each ‘Sending Country’ and ‘Receiving Country’ data files.
The combined data available for the study is from 2011 to 2023. Missing values
are not imputed in the panel data.
description: Smallest Geographic Unit: Global
description: other;
DOI: 10.6084/m9.figshare.28789820
title: CODERData2.1.0

description: Cancer Organoid Data
DOI: 10.6084/m9.figshare.14601966
title: Additional file 14 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 14: Table S6. The information of SSR primers.
DOI: 10.6084/m9.figshare.14601966.v1
title: Additional file 14 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 14: Table S6. The information of SSR primers.
DOI: 10.6084/m9.figshare.8310521
title: Additional file 1: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S1. Differentially expressed genes between mock and BVDV-2 infected samples at 12hpi. (XLS 111 kb)
DOI: 10.6084/m9.figshare.8310521.v1
title: Additional file 1: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S1. Differentially expressed genes between mock and BVDV-2 infected samples at 12hpi. (XLS 111 kb)
DOI: 10.6084/m9.figshare.14601969
title: Additional file 15 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 15: Table S7. The detailed information of predicted miRNAs.
DOI: 10.6084/m9.figshare.8310524
title: Additional file 7: of Proteomic analysis by iTRAQ-PRM provides integrated insight into mechanisms of resistance in pepper to Bemisia tabaci (Gennadius)

description: Table S4. GO molecular function enrichment of DAPs (XLSX 114 kb)
DOI: 10.6084/m9.figshare.14601969.v1
title: Additional file 15 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 15: Table S7. The detailed information of predicted miRNAs.
DOI: 10.6084/m9.figshare.8310524.v1
title: Additional file 7: of Proteomic analysis by iTRAQ-PRM provides integrated insight into mechanisms of resistance in pepper to Bemisia tabaci (Gennadius)

description: Table S4. GO molecular function enrichment of DAPs (XLSX 114 kb)
DOI: 10.6084/m9.figshare.8310527
title: Additional file 2: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S2. GO enrichment results of the DEGs between mock and BVDV-2 infected samples. (XLS 159 kb)
DOI: 10.6084/m9.figshare.8310527.v1
title: Additional file 2: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S2. GO enrichment results of the DEGs between mock and BVDV-2 infected samples. (XLS 159 kb)
DOI: 10.6084/m9.figshare.14601972
title: Additional file 16 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 16: Table S8. The log2tpm values of all TaSCPL genes in the different subfamilies and wheat developmental tissues/stages.
DOI: 10.6084/m9.figshare.14601972.v1
title: Additional file 16 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 16: Table S8. The log2tpm values of all TaSCPL genes in the different subfamilies and wheat developmental tissues/stages.
DOI: 10.5519/qd.743hy72v
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.8310530
title: Additional file 8: of Proteomic analysis by iTRAQ-PRM provides integrated insight into mechanisms of resistance in pepper to Bemisia tabaci (Gennadius)

description: Table S5. GO cellular component enrichment of DAPs (XLSX 46 kb)
DOI: 10.6084/m9.figshare.14601975
title: Additional file 17 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 17: Table S9. The log2tpm values of all TaSCPL genes under drought stress treatment.
DOI: 10.6084/m9.figshare.8310530.v1
title: Additional file 8: of Proteomic analysis by iTRAQ-PRM provides integrated insight into mechanisms of resistance in pepper to Bemisia tabaci (Gennadius)

description: Table S5. GO cellular component enrichment of DAPs (XLSX 46 kb)
DOI: 10.6084/m9.figshare.14601975.v1
title: Additional file 17 of Genome-wide analysis of the serine carboxypeptidase-like protein family in Triticum aestivum reveals TaSCPL184-6D is involved in abiotic stress response

description: Additional file 17: Table S9. The log2tpm values of all TaSCPL genes under drought stress treatment.
DOI: 10.14272/vbwhprbmtjbbbq-hbmpaylnsa-n/chmo0000763
title: attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR) ()
title: InChI=1S/C22H24N2O4/c1-5-18(25)23-20-12(2)22(15-9-7-6-8-14(15)21(26)24-22)16-10-13(27-3)11-17(28-4)19(16)20/h6-12,20H,5H2,1-4H3,(H,23,25)(H,24,26)/t12-,20-,22-/m1/s1

description: dataset for attenuated total reflectance Fourier transform infrared spectroscopy (ATR-FTIR)
 
 IR (ATR, ṽ) = 3363 (w), 3189 (w), 3072 (w), 2976 (w), 2937 (w), 2926 (w), 2842 (w), 2236 (w), 1688 (vs), 1670 (vs), 1598 (s), 1525 (s), 1484 (m), 1465 (s), 1452 (m), 1439 (m), 1424 (w), 1348 (m), 1316 (vs), 1262 (w), 1225 (s), 1201 (w), 1191 (w), 1152 (m), 1136 (s), 1072 (m), 1056 (m), 1032 (m), 982 (m), 942 (w), 923 (s), 896 (w), 858 (w), 850 (m), 770 (w), 759 (m), 735 (vs), 723 (vs), 710 (vs), 678 (w), 672 (w), 658 (w), 645 (s), 595 (s), 553 (m), 502 (w) cm–1.
DOI: 10.6084/m9.figshare.8310533
title: Additional file 3: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S3. KEGG pathway enrichment result of the DEGs between mock and BVDV-2 infected samples. (XLS 17 kb)
DOI: 10.14272/vbwhprbmtjbbbq-hbmpaylnsa-n/chmo0000473
title: atmospheric pressure chemical ionisation mass spectrometry (APCI MS) ()
title: InChI=1S/C22H24N2O4/c1-5-18(25)23-20-12(2)22(15-9-7-6-8-14(15)21(26)24-22)16-10-13(27-3)11-17(28-4)19(16)20/h6-12,20H,5H2,1-4H3,(H,23,25)(H,24,26)/t12-,20-,22-/m1/s1

description: dataset for atmospheric pressure chemical ionisation mass spectrometry (APCI MS)
 
 MS (APCI, m/z): 764 (6), 763 (24), 762 (49), 761 (44) [2M+H]+, 383 (20), 382 (73), 381 (100) [M+H]+, 380 (8), 310 (5), 309 (27), 308 (45).
DOI: 10.14272/vbwhprbmtjbbbq-hbmpaylnsa-n/chmo0000498
title: high-resolution mass spectrometry (HRMS) ()
title: InChI=1S/C22H24N2O4/c1-5-18(25)23-20-12(2)22(15-9-7-6-8-14(15)21(26)24-22)16-10-13(27-3)11-17(28-4)19(16)20/h6-12,20H,5H2,1-4H3,(H,23,25)(H,24,26)/t12-,20-,22-/m1/s1

description: dataset for high-resolution mass spectrometry (HRMS)
 
 HRMS (EI+, 70 eV, m/z): [M]+ calc. for C22H24N2O4 380.1736; found 380.1742.
DOI: 10.14272/vbwhprbmtjbbbq-hbmpaylnsa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) ()
title: InChI=1S/C22H24N2O4/c1-5-18(25)23-20-12(2)22(15-9-7-6-8-14(15)21(26)24-22)16-10-13(27-3)11-17(28-4)19(16)20/h6-12,20H,5H2,1-4H3,(H,23,25)(H,24,26)/t12-,20-,22-/m1/s1

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 13C NMR (101 MHz, DMSO-d6 [39.52 ppm], ppm) δ = 172.8, 169.5, 161.2, 157.5, 148.0, 146.2, 131.8, 131.4, 128.3, 123.2, 122.9, 121.0, 99.1, 97.8, 71.4, 55.4 (2C), 54.1, 52.0, 28.8, 10.7, 10.4.
DOI: 10.14272/vbwhprbmtjbbbq-hbmpaylnsa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) ()
title: InChI=1S/C22H24N2O4/c1-5-18(25)23-20-12(2)22(15-9-7-6-8-14(15)21(26)24-22)16-10-13(27-3)11-17(28-4)19(16)20/h6-12,20H,5H2,1-4H3,(H,23,25)(H,24,26)/t12-,20-,22-/m1/s1

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 1H NMR (400 MHz, DMSO-d6 [2.50 ppm], ppm) δ = 9.08 (s, 1H), 8.08 (d, J = 9.2 Hz, 1H), 7.72–7.66 (m, 1H), 7.53–7.41 (m, 2H), 6.95–6.89 (m, 1H), 6.46 (d, J = 2.1 Hz, 1H), 6.01 (d, J = 2.1 Hz, 1H), 5.34 (t, J = 9.3 Hz, 1H), 3.74 (s, 3H), 3.62 (s, 3H), 2.59–2.51 (m, 1H), 2.23–2.04 (m, 2H), 1.07 (t, J = 7.6 Hz, 3H), 0.58 (d, J = 6.9 Hz, 3H). Impurities: ~4% minor diastereomer.
DOI: 10.6084/m9.figshare.8310533.v1
title: Additional file 3: of Transcriptome analysis reveals differential immune related genes expression in bovine viral diarrhea virus-2 infected goat peripheral blood mononuclear cells (PBMCs)

description: Table S3. KEGG pathway enrichment result of the DEGs between mock and BVDV-2 infected samples. (XLS 17 kb)