cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16918972.v3
title: Evidence-based annotation of the malaria parasite's genome using comparative expression profiling

description: This is the companion web site for publication:<br>Zhou Y, Ramachandran V, Kumar KA, Westenberger S, Refour P, Zhou B, Li F, Young JA, Chen K, Plouffe D, Henson K, Nussenzweig V, Carlton J, Vinetz JM, Duraisingh MT, Winzeler EA. Evidence-based annotation of the malaria parasite's genome using comparative expression profiling. PLoS One. 2008 Feb 13;3(2):e1570. doi: 10.1371/journal.pone.0001570. PMID: 18270564; PMCID: PMC2215772.<br><br>Download and unzip the file, open Py/index.html to browse the self-contained web site.
DOI: 10.6084/m9.figshare.16918972.v2
title: Evidence-based annotation of the malaria parasite's genome using comparative expression profiling

description: This is the companion web site for publication:<br>Zhou Y, Ramachandran V, Kumar KA, Westenberger S, Refour P, Zhou B, Li F, Young JA, Chen K, Plouffe D, Henson K, Nussenzweig V, Carlton J, Vinetz JM, Duraisingh MT, Winzeler EA. Evidence-based annotation of the malaria parasite's genome using comparative expression profiling. PLoS One. 2008 Feb 13;3(2):e1570. doi: 10.1371/journal.pone.0001570. PMID: 18270564; PMCID: PMC2215772.<br><br>Download and unzip the file, open Py/index.html to browse the self-contained web site.
DOI: 10.25318/1310081901-fra
title: Obstacles à l'accessibilité rencontrés lors des interactions avec des organisations du secteur public chez les personnes ayant des incapacités, des difficultés ou des problèmes de santé de longue durée

description: Le nombre et le pourcentage de personnes ayant des incapacités, des difficultés ou des problèmes de santé de longue durée âgées de 19 ans et plus qui ont rencontré des obstacles à l'accessibilité lors de leurs interactions avec des organisations du secteur public au cours des deux dernières années, Canada (à l'exclusion des territoires) et provinces (regroupées).
DOI: 10.5281/zenodo.5639520
title: Base de datos de excel donde se clasifican los artículos requeridos para dar respuesta a las interrogantes planteadas para la investigación " Mapeo sistemático de la inteligencia emocional y violencia escolar en adolescentes (2015-2021)"

description: Se realizó un análisis de las investigaciones publicadas entre 2015 y 2021 sobre la inteligencia emocional y la violencia escolar en adolescentes. Se realizó una búsqueda en las bases de datos Scopus, ProQuest, EBSCO, DOAJ, Scielo, Redalyc y Latindex. Como criterio de elegibilidad se consideró estudios en población adolescente que por lo menos abordara una de las variables, independientemente de la metodología utilizada. Un total de 46 artículos fueron seleccionados, luego de aplicar los criterios de inclusión y exclusión. Los resultados muestran investigaciones que abordan la variable de estudio por separado y en forma conjunta. En conclusión, existe escazas investigaciones que correlacionen ambas variables, sin embargo, se puede comprobar que la inteligencia emocional influye de manera inversa y significativa en la violencia escolar, es decir, a mayor nivel de inteligencia emocional menor índice de violencia escolar.
DOI: 10.5281/zenodo.5639519
title: Base de datos de excel donde se clasifican los artículos requeridos para dar respuesta a las interrogantes planteadas para la investigación " Mapeo sistemático de la inteligencia emocional y violencia escolar en adolescentes (2015-2021)"

description: Se realizó un análisis de las investigaciones publicadas entre 2015 y 2021 sobre la inteligencia emocional y la violencia escolar en adolescentes. Se realizó una búsqueda en las bases de datos Scopus, ProQuest, EBSCO, DOAJ, Scielo, Redalyc y Latindex. Como criterio de elegibilidad se consideró estudios en población adolescente que por lo menos abordara una de las variables, independientemente de la metodología utilizada. Un total de 46 artículos fueron seleccionados, luego de aplicar los criterios de inclusión y exclusión. Los resultados muestran investigaciones que abordan la variable de estudio por separado y en forma conjunta. En conclusión, existe escazas investigaciones que correlacionen ambas variables, sin embargo, se puede comprobar que la inteligencia emocional influye de manera inversa y significativa en la violencia escolar, es decir, a mayor nivel de inteligencia emocional menor índice de violencia escolar.
DOI: 10.25318/1310082701-eng
title: Bone health measures of the household population

description: Bone health measures of the household population, by sex and age group.
DOI: 10.6084/m9.figshare.16919980.v1
title: In silico gene function prediction using ontology-based pattern identification

description: This is the companion web site for publication:<br>Zhou Y, Young JA, Santrosyan A, Chen K, Yan SF, Winzeler EA. In silico gene function prediction using ontology-based pattern identification. Bioinformatics. 2005 Apr 1;21(7):1237-45. doi: 10.1093/bioinformatics/bti111. Epub 2004 Nov 5. PMID: 15531612.<br><br>Download and unzip the file, open OPI/index.html to browse the self-contained web site.
DOI: 10.6084/m9.figshare.16919980
title: In silico gene function prediction using ontology-based pattern identification

description: This is the companion web site for publication:<br>Zhou Y, Young JA, Santrosyan A, Chen K, Yan SF, Winzeler EA. In silico gene function prediction using ontology-based pattern identification. Bioinformatics. 2005 Apr 1;21(7):1237-45. doi: 10.1093/bioinformatics/bti111. Epub 2004 Nov 5. PMID: 15531612.<br><br>Download and unzip the file, open OPI/index.html to browse the self-contained web site.
DOI: 10.25318/1310082701-fra
title: Mesures de la santé des os de la population à domicile

description: Mesures de la santé des os de la population à domicile, selon le sexe et le groupe d'âge.
DOI: 10.5281/zenodo.5637357
title: Spatial distributions of XCO2 seasonal cycle amplitude and phase over northern high-latitude regions

description: This dataset is the GEOS-Chem model output used in the following publication, <br> Jacobs, N., Simpson, W. R., Graham, K. A., Holmes, C., Hase, F., Blumenstock, T., Tu, Q., Frey, M., Dubey, M. K., Parker, H. A., Wunch, D., Kivi, R., Heikkinen, P., Nothold, J., Petri, C., and Warneke, T.: Spatial distributions of <em>X<sub>CO</sub></em><sub>2</sub> seasonal cycle amplitude and phase over northern high latitude regions, <em>Atmos. Chem. Phys. Discuss.</em> [preprint], https://doi.org/10.5194/acp-2021-185, in review, 2021. The zip file contains two directories.<br> CO2_tracers/GEOSChem.CO2tagged.YYYYMM.nc files: this directory contains the CO<sub>2</sub> simulation as defined by Jacobs et al. (2021). YYYY indicates year and MM indicates month.<br> TT_tracers/GEOSChem.TTtagged.YYYYMM.nc files: this directory contains the tagged tracers simulation as defined by Jacobs et al. (2021). YYYY indicates year and MM indicates month.
DOI: 10.5519/qd.25nvr66k
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (376992 records)
DOI: 10.25318/1310083101-eng
title: Accessibility barriers experienced when interacting with federal sector organizations among persons with disabilities, difficulties or long-term health conditions, by population characteristics

description: The number and percentage of persons with disabilities, difficulties or long-term health conditions aged 19 and older who experienced accessibility barriers when interacting with federal sector organizations within the last two years, by selected population characteristics, Canada (excluding territories).
DOI: 10.25318/1310083101-fra
title: Obstacles à l'accessibilité rencontrés lors des interactions avec des organisations du secteur public chez les personnes ayant des incapacités, des difficultés ou des problèmes de santé de longue durée, selon les caractéristiques de la population

description: Le nombre et le pourcentage des personnes ayant des incapacités, des difficultés ou des problèmes de santé de longue durée âgées de 19 ans et plus qui ont rencontré des obstacles à l'accessibilité lors de leurs interactions avec des organisations du secteur public au cours des deux dernières années, selon certaines caractéristiques de la population, Canada (à l'exclusion des territoires).
DOI: 10.5281/zenodo.5639084
title: Swift-BAT Response Files for NITRATES: Forward Ray Tracings at IMX &lt; 0

description: These tarred files contain the forward ray tracings onto the BAT detector plane for source positions at IMX ranging from -1.8 to 0.0 and IMY ranging from -1 to 1 with a grid spacing of 0.002. The files are in a npy format and are designed for use in the NITRATES analysis.
DOI: 10.5281/zenodo.5639083
title: Swift-BAT Response Files for NITRATES: Forward Ray Tracings at IMX &lt; 0

description: These tarred files contain the forward ray tracings onto the BAT detector plane for source positions at IMX ranging from -1.8 to 0.0 and IMY ranging from -1 to 1 with a grid spacing of 0.002. The files are in a npy format and are designed for use in the NITRATES analysis.
DOI: 10.5281/zenodo.2595071
title: Security Bug Conversations

description: This dataset will be released as part of the following publication. Benjamin S. Meyers, Nuthan Munaiah, Andrew Meneely, and Emily Prud'hommeaux. <strong>Pragmatic Characteristics of Security Conversation: An Exploratory Linguistic Analysis. </strong><em>Forthcoming.</em><strong> </strong>Proceedings of the 12th International Workshop on Cooperative and Human Aspects of Software Engineering (CHASE 2019). Montréal, QC, Canada. <strong>Files:</strong> <pre><code>security_bug_conversations.csv</code></pre> The full dataset containing over 2.1 million comments posted by developers discussing bugs in the Chromium project. The dataset also includes the values we calculated for the five pragmatic features (described in Section 3 of the paper cited above). <strong>CSV Fields:</strong> <strong>Organizational:</strong> <em>Bug ID:</em> Unique identifier of a bug discussion in the Chromium project. The URL https://bugs.chromium.org/p/chromium/issues/detail?id=&lt;Bug ID&gt; may be used to access the bug online <em>Comment ID:</em> Unique identifier of a comment in a bug discussion <strong>Classification:</strong> <em>Is Security:</em> Binary indicator of whether or not a comment is part of a bug that is about security <strong>Natural Language:</strong> <em>Comment Text:</em> The raw natural language text of the bug comment <strong>Linguistic Metrics:</strong> <em>Min. Formality:</em> Minimum of the formality of sentences in the bug comment <em>Max. Formality:</em> Maximum of the formality of sentences in the bug comment <em>Max. Informativeness:</em> Maximum of the informativeness of sentences in the bug comment <em>Max. Implicature:</em> Maximum of the implicature of sentences in the bug comment <em>Min. Politeness:</em> Minimum of the politeness of sentences in the bug comment <em>Max. Politeness:</em> Maximum of the politeness of sentences in the bug comment Number of Tokens Number of Sentences <em>Has Doxastic Uncertainty:</em> Binary indicator of presence of a sentence with doxastic uncertainty in the bug comment <em>Has Epistemic Uncertainty:</em> Binary indicator of presence of a sentence with epistemic uncertainty in the bug comment <em>Has Conditional Uncertainty:</em> Binary indicator of presence of a sentence with conditional uncertainty in the bug comment <em>Has Investigational Uncertainty:</em> Binary indicator of presence of a sentence with investigational uncertainty in the bug comment <em>Has Uncertainty:</em> Binary indicator of presence of a sentence with any uncertainty in the bug comment
description: Whenever possible, we would appreciate it if you cite both the paper that released this work and the DOI for this dataset. Thank you!
DOI: 10.5281/zenodo.2595070
title: Security Bug Conversations

description: This dataset will be released as part of the following publication. Benjamin S. Meyers, Nuthan Munaiah, Andrew Meneely, and Emily Prud'hommeaux. <strong>Pragmatic Characteristics of Security Conversation: An Exploratory Linguistic Analysis. </strong><em>Forthcoming.</em><strong> </strong>Proceedings of the 12th International Workshop on Cooperative and Human Aspects of Software Engineering (CHASE 2019). Montréal, QC, Canada. <strong>Files:</strong> <pre><code>security_bug_conversations.csv</code></pre> The full dataset containing over 2.1 million comments posted by developers discussing bugs in the Chromium project. The dataset also includes the values we calculated for the five pragmatic features (described in Section 3 of the paper cited above). <strong>CSV Fields:</strong> <strong>Organizational:</strong> <em>Bug ID:</em> Unique identifier of a bug discussion in the Chromium project. The URL https://bugs.chromium.org/p/chromium/issues/detail?id=&lt;Bug ID&gt; may be used to access the bug online <em>Comment ID:</em> Unique identifier of a comment in a bug discussion <strong>Classification:</strong> <em>Is Security:</em> Binary indicator of whether or not a comment is part of a bug that is about security <strong>Natural Language:</strong> <em>Comment Text:</em> The raw natural language text of the bug comment <strong>Linguistic Metrics:</strong> <em>Min. Formality:</em> Minimum of the formality of sentences in the bug comment <em>Max. Formality:</em> Maximum of the formality of sentences in the bug comment <em>Max. Informativeness:</em> Maximum of the informativeness of sentences in the bug comment <em>Max. Implicature:</em> Maximum of the implicature of sentences in the bug comment <em>Min. Politeness:</em> Minimum of the politeness of sentences in the bug comment <em>Max. Politeness:</em> Maximum of the politeness of sentences in the bug comment Number of Tokens Number of Sentences <em>Has Doxastic Uncertainty:</em> Binary indicator of presence of a sentence with doxastic uncertainty in the bug comment <em>Has Epistemic Uncertainty:</em> Binary indicator of presence of a sentence with epistemic uncertainty in the bug comment <em>Has Conditional Uncertainty:</em> Binary indicator of presence of a sentence with conditional uncertainty in the bug comment <em>Has Investigational Uncertainty:</em> Binary indicator of presence of a sentence with investigational uncertainty in the bug comment <em>Has Uncertainty:</em> Binary indicator of presence of a sentence with any uncertainty in the bug comment
description: Whenever possible, we would appreciate it if you cite both the paper that released this work and the DOI for this dataset. Thank you!
DOI: 10.5519/qd.jrkiqc2a
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.16919983
title: The Data for: The effect of transcutaneous auricular vagus nerve stimulation on HRV in healthy young people

description: The electrocardiogram (ECG) was measured using a three-lead ECG acquisition equipment (PC-80B, Shanghai Lixin Instrument Co, Ltd.) in order to assess HRV. ECG data were recorded using three AgCl surface electrodes, on both sides of the 4th intercostal space of the sternum and one left electrode on the costal margin of the right midclavicular line. According to the suggestion of Task Force, the sampling rate was 1024Hz. After the ECG signal recorded, we used MATLAB R2016a to process it for extraction of tachogram, which contains the inter-beat-intervals (IBIS) which was required for HRV analyzing. Firstly, we employed the Pan-Tompkins algorithm to detect the R peaks of the ECG signal. Secondly, we visually inspected the detection and manually removed artifacts according to published guidelines. Finally, we extracted time- and frequency-domain indices of HRV from the processed IBIs. Based on the recommendations for HRV measurement, we analyzed the time domain and frequency domain indicators of HRV with HRV analysis software (version 1.0) in blocks of 5 min.
DOI: 10.5281/zenodo.5639507
title: TheyBuyForYou Knowledge Graph data dump

description: Data dump of the Knowledge Graph (KG) for the TheyBuyForYou project in RDF format containing procurement data and company data (for reconciled suppliers) for the period January 2019 to October 2021. In addition to the KG data dump in RDF, we have also made available the source data input for the KG, i.e., procurement data from OpenOpps and company data (for reconciled suppliers) from OpenCorporates in JSON format.
DOI: 10.6084/m9.figshare.14806704
title: Miller et al. Socio-ecological correlates of neophobia in corvids

description: Data sets and R script from Miller et al. Neophobia in corvids
DOI: 10.6084/m9.figshare.14806704.v1
title: Miller et al. Socio-ecological correlates of neophobia in corvids

description: Data sets and R script from Miller et al. Neophobia in corvids
DOI: 10.6084/m9.figshare.16920034.v1
title: Muscle oxygenation in vastus lateralis and gastrocnemius during incremental running exercise: effect of exercise intensity, VO2max, sex and age

description: Introduction. The aim of this study was to describe the effect of exercise intensity, maximum oxygen utilisation (V ̇O_2MAX), sex and age on vastus lateralis (VL) and gastrocnemius (Gn) muscle oxygenation measured using near-infrared spectroscopy (NIRS) during incremental running exercise to exhaustion, in a participant group having a large range of V ̇O_2MAX.Methods. Systemic cardiorespiratory responses (V ̇O_2, ventilatory thresholds), and variables of muscle oxygenation (Δ[HHb], Δ[O2Hb], ΔTSI) at VL and Gn muscles were collected continuously in thirty-six participants (11 women, 25 men; age: 34.110.7 yr; height: 1.750.1 m; weight: 70.216.6 kg; weekly training: 591374 min;) during an incremental running test (V ̇O_2MAX=52.511.9 mL·min-1·kg-1). Breakpoint analyses were used to compare systemic cardiorespiratory responses and patterns of muscle oxygenation. The effect of exercise intensity, V ̇O_2MAX, sex and age on Δ[HHb], Δ[O2Hb] and ΔTSI at VL and Gn were determined at 10% increments from 50% to 100% of V ̇O_2MAX.Results. The only predictor of V ̇O_2MAX was Δ[HHb] at VL, and gas exchange thresholds and muscle oxygenation breakpoints were not significantly correlated. There were no effects of V ̇O_2MAX or sex on the dynamics of muscle oxygenation. The effect of exercise intensity was significant for all variables at VL, and only for Δ[HHb] at Gn at 50% and 60% of V ̇O_2MAX. The magnitude of muscle oxygenation responses was significantly decreased in women compared to men, and there was no effect of age. Conclusion. Our results indicate that using NIRS oximetry, Δ[HHb] on vastus lateralis, but not gastrocnemius, is suitable to identify changes in exercise intensity and aerobic capacity in running, with a lower magnitude of response in women compared to men, and with no effect of age.<br>
DOI: 10.6084/m9.figshare.16920034
title: Muscle oxygenation in vastus lateralis and gastrocnemius during incremental running exercise: effect of exercise intensity, VO2max, sex and age

description: Introduction. The aim of this study was to describe the effect of exercise intensity, maximum oxygen utilisation (V ̇O_2MAX), sex and age on vastus lateralis (VL) and gastrocnemius (Gn) muscle oxygenation measured using near-infrared spectroscopy (NIRS) during incremental running exercise to exhaustion, in a participant group having a large range of V ̇O_2MAX.Methods. Systemic cardiorespiratory responses (V ̇O_2, ventilatory thresholds), and variables of muscle oxygenation (Δ[HHb], Δ[O2Hb], ΔTSI) at VL and Gn muscles were collected continuously in thirty-six participants (11 women, 25 men; age: 34.110.7 yr; height: 1.750.1 m; weight: 70.216.6 kg; weekly training: 591374 min;) during an incremental running test (V ̇O_2MAX=52.511.9 mL·min-1·kg-1). Breakpoint analyses were used to compare systemic cardiorespiratory responses and patterns of muscle oxygenation. The effect of exercise intensity, V ̇O_2MAX, sex and age on Δ[HHb], Δ[O2Hb] and ΔTSI at VL and Gn were determined at 10% increments from 50% to 100% of V ̇O_2MAX.Results. The only predictor of V ̇O_2MAX was Δ[HHb] at VL, and gas exchange thresholds and muscle oxygenation breakpoints were not significantly correlated. There were no effects of V ̇O_2MAX or sex on the dynamics of muscle oxygenation. The effect of exercise intensity was significant for all variables at VL, and only for Δ[HHb] at Gn at 50% and 60% of V ̇O_2MAX. The magnitude of muscle oxygenation responses was significantly decreased in women compared to men, and there was no effect of age. Conclusion. Our results indicate that using NIRS oximetry, Δ[HHb] on vastus lateralis, but not gastrocnemius, is suitable to identify changes in exercise intensity and aerobic capacity in running, with a lower magnitude of response in women compared to men, and with no effect of age.<br>
DOI: 10.5519/qd.4dlefiry
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1386 records)
DOI: 10.5281/zenodo.5044581
title: data for "An unbound proline-rich signaling peptide frequently samples cis conformations in Gaussian accelerated molecular dynamics simulations"

description: Disordered proline-rich motifs are common across the proteomes of many species and are often involved in protein-protein interactions. Proline is a unique amino acid due to the covalent bond between the backbone nitrogen and the proline side chain. The resulting five-membered ring allows proline to sample the <em>cis</em> state about its peptide bond, which other residues cannot do as readily. Because proline-rich disordered sequences exist as ensembles that likely include structures with the proline peptide bond in <em>cis</em>, a robust methodology to accurately account for these conformations in the overall ensemble is crucial. Observing the <em>cis </em>conformations of proline in a disordered sequence is challenging both experimentally and computationally. Nitrogen-hydrogen NMR spectroscopy cannot directly observe proline residues, which lack an amide bond, and computational methods struggle to overcome the large kinetic barrier between the <em>cis </em>and <em>trans </em>states, since isomerization usually occurs on the order of seconds. In the current work, Gaussian accelerated molecular dynamics was used to overcome this free energy barrier and simulate proline isomerization in a tetrapeptide (KPTP) and in the 12-residue proline-rich SH3 binding peptide, ArkA. We found that Gaussian accelerated molecular dynamics, when combined with a lowered peptide bond dihedral angle potential energy barrier (15 kcal/mol), allowed sufficient sampling of the proline <em>cis </em>and <em>trans </em>states on a microsecond timescale. All ArkA prolines spend a significant fraction of time in <em>cis</em>, leading to a more compact ensemble with less polyproline II helix structure than an ArkA ensemble with all peptide bonds in <em>trans</em>. The ensemble containing <em>cis</em> prolines also matches more closely to <em>in vitro</em> circular dichroism data than the all-<em>trans</em> ensemble. The ability of the ArkA prolines to isomerize likely affects the peptide’s ability to bind its partner SH3 domain, and should be studied further. This is the first molecular dynamics simulation study of proline isomerization in a biologically relevant proline-rich sequence that we know of, and a similar protocol could be applied to study multi-proline isomerization in other proline-containing proteins to improve conformational diversity and agreement with <em>in vitro</em> data.