cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6069/47ad-wh56
title: Monitoring extended stable isotope-labeled synthetic peptides as a quality control for protease digestion in targeted, multiplexed mass spectrometry-based assays

description: Targeted mass spectrometry-based assays are proven to offer sensitive, selective quantification of proteins in a variety of translational applications, including cell lines, plasma/serum, dried blood spots and tissue biopsies. Recent efforts have successfully transferred targeted mass spectrometry methodologies, specifically multiplexed multiple reaction monitoring (MRM)-based assays, into the clinical environment. Yet, if MRM-based assays are to be utilized in the clinical space, quality control (QC) metrics are needed to control specifically for protease digestion, the sample processing step with the highest variability, thus ensuring optimal, reliable, and reproducible protein quantification. In this study, we evaluate the utility of monitoring extended stable isotope labeled internal standards (SIS) that are digested in situ within native protein lysates to survey the extent of sample protease digestion. Over 500 extended SIS peptides corresponding to targets of two separate multiplexed MRM assays, a direct-MRM and an immuno-MRM assay, were spiked into cell lysates which then underwent a series of systematically designed robustness experiments that stressed efficient protease digestion, including a trypsin digestion time-course as well as different protease digestion stressors. By simultaneously measuring levels of the extended and tryptic forms of the SIS peptide, the peak area ratio of extended SIS (hE) to tryptic SIS (hT), or hE/hT, was shown to effectively monitor perturbations in digestion performance. From time-course experiments, observed rates of extended SIS peptide digestion were calculated and hE/hT ratios uncovered an optimum time needed for protease digestion. When the endogenous peptides were quantified in these stressor and time-course experiments, this hE/hT QC metric reflected the sensitivity and fidelity of the MRM assays. This study demonstrates the effectiveness of monitoring extended SIS peptides within targeted, multiplexed MRM assays as a QC metric for protease digestion to ensure reliable, robust quantification of the endogenous protein targets.
DOI: 10.6084/m9.figshare.22564501
title: Cell-barcode-ID-to-clusters

description: Tables with cell-barcode-ID-to-cluster associations from the PI-induced cardiotoxicity project
DOI: 10.6084/m9.figshare.22564501.v1
title: Cell-barcode-ID-to-clusters

description: Tables with cell-barcode-ID-to-cluster associations from the PI-induced cardiotoxicity project
DOI: 10.6084/m9.figshare.22564450
title: CFZvsVehicle.rds

description: Processed Seurat files from scRNAseq from murine hearts treated with Carfilzomib vs Vehicle. From the PI-induced cardiotoxicity project.
DOI: 10.6084/m9.figshare.22564453
title: CFZvsCFZATRA.rds

description: Processed Seurat files from scRNAseq from murine hearts treated with Carfilzomib vs Carfilzomib+atRA. From the PI-induced cardiotoxicity project.
DOI: 10.6084/m9.figshare.22564453.v1
title: CFZvsCFZATRA.rds

description: Processed Seurat files from scRNAseq from murine hearts treated with Carfilzomib vs Carfilzomib+atRA. From the PI-induced cardiotoxicity project.
DOI: 10.17909/wm8a-cg40
title: A1489

description: JWST, HST and SST data used in A1489 paper
DOI: 10.6084/m9.figshare.22564456
title: CFZATRAvsVehicle.rds

description: Processed Seurat files from scRNAseq from murine hearts treated with Carfilzomib+atRA vs Vehicle. From the PI-induced cardiotoxicity project.
DOI: 10.6084/m9.figshare.22564456.v1
title: CFZATRAvsVehicle.rds

description: Processed Seurat files from scRNAseq from murine hearts treated with Carfilzomib+atRA vs Vehicle. From the PI-induced cardiotoxicity project.
DOI: 10.22002/tevtp-hga12
title: Data from "Measuring data rot: an analysis of the continued availability of shared data from a single university"

description: Data files from the article "Measuring Data Rot" by Kristin Briney.
This research looked at supplemental data links from publications in CaltechAUTHORS and tested them for their availability on the web using web scraping and hand testing in the Chrome browser.
Data in the tables:

Table1_LinkType.csv
Table2_URLwebsites.csv
Table3_DOIwebsites.csv
Table4_UnavailableByType.csv
Table5_UnavailableURLs.csv
Table6_UnavailableDOIs.csv
Data in the figures:

Figure1_LinksByYear.csv
Figure2_UnavailableByYear.csv
Data from the project:

DataRot.csv

Overall dataset supporting this research, with variables defined in the data dictionary. This data contains all of the links tested, listing results of the webscraping but not results of the hand testing.
DataRot_dataDictionary.csv

Data dictionary defining variable names and values for DataRot.csv
DataRot_handTested.csv

Subset of supplemental data links from DataRot.csv that were hand tested and the results of the hand testing ("browser_test = TRUE" means the data was available, "browser_test = FALSE" means the data was not available, and "browser_test = LOGIN" means the webpage asked for a login to see the data).
DataRot_missingData.csv

Subset of DataRot_handTested.csv with fewer variables. This dataset only includes supplemental data links for data that was not available.
DOI: 10.5281/zenodo.8085933
title: Cold rolling mill: Dataset for Recommender system for process optimization

description: The dataset (pickle formatted with version pickle=4.0) contains a collection of process values obtained from a process line. Each value represents the mean measurement within a window at specific intervals along the distance domain. These intervals were equidistant and sampled under steady-state conditions, ensuring consistent data collection. The process values included in the dataset cover a range of parameters and variables relevant to the process line. These values provide information about the behavior and characteristics of the process at different points along the distance domain. Associate source code is available at: Recommender system for process optimization (github.com).
DOI: 10.5281/zenodo.8085932
title: Cold rolling mill: Dataset for Recommender system for process optimization

description: The dataset (pickle formatted with version pickle=4.0) contains a collection of process values obtained from a process line. Each value represents the mean measurement within a window at specific intervals along the distance domain. These intervals were equidistant and sampled under steady-state conditions, ensuring consistent data collection. The process values included in the dataset cover a range of parameters and variables relevant to the process line. These values provide information about the behavior and characteristics of the process at different points along the distance domain. Associate source code is available at: Recommender system for process optimization (github.com).
DOI: 10.6084/m9.figshare.22047464.v1
title: Soil amendment - AM fungi

description: Supplimentary files (including statistics and correlations), and molecular sequencing output files, for ' The influence of a soil amendment upon the abundance and interaction of arbuscular mycorrhizal fungi with arable soils and host winter wheat'
DOI: 10.6084/m9.figshare.23546646
title: <em>Change in R&D Costs as a Percentage of GDP during the Investment Crisis from 2009 to 2013</em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.6084/m9.figshare.23546646.v1
title: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today

description: <em>Change in R&D Costs as a Percentage of GDP during the Investment Crisis from 2009 to 2013</em>
DOI: 10.6084/m9.figshare.23546646.v2
title: <em>Change in R&D Costs as a Percentage of GDP during the Investment Crisis from 2009 to 2013</em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.5281/zenodo.7830132
title: Image dataset for the creation of an automatic system for meteor fall detection

description: Image dataset with sky photos showing the occurrence or non-occurrence of falling meteors. The database comprises 7,000 images in JPEG format -- 3,850 (55%) images show the event of falling meteors, and 3,150 (45%) images show no meteors. Different instruments captured the photos from 2014 to 2023. We used the images to train a deep-learning neural network for an automatic falling meteor detector. The primary image data sources were the Brazilian Meteor Observation Network (BRAMON -- http://www.bramonmeteor.org), UK Meteor Network (UKMON -- https://ukmeteornetwork.co.uk), and <em>Base des Observateurs Amateurs de Météores</em> (BOAM -- http://boam.fr) repositories. <strong>Folders Structure</strong> We divided the folder structure into two levels. In the first level, we have two folders: RawImages, which holds images with captions stored in the repositories; and CroppedImages, which contains images without the captions (we cropped a band of 24 pixels in the lower part of the image). In the second level, in each of the previous folders, we have another two folders: meteor, which has images with meteors; and non-meteors, with images without occurrences of meteors. <strong>Naming pattern for the files</strong> The naming pattern in the meteor folder follows the format &lt;source&gt;_&lt;date&gt;_&lt;id&gt;.jpg where: &lt;source&gt; is one of the 3 data sources: bramon, ukmon, or boam. &lt;date&gt; is the date-time the instrument captured the image in the format yyyymmdd_hhnnss (y:year, m:month, d:day, h:hours, n:minutes, s:seconds). &lt;id&gt; is an identifier from a specific source to avoid date-time conflicts: BRAMON: radiant identifier. UKMON: station identifier. BOAM: station identifier. For the non-meteor folder, the naming pattern is &lt;source&gt;_&lt;date&gt;_nonmeteor.jpg to avoid homonyms (with the same date-time) and to identify that they are images of non-meteors.
DOI: 10.5281/zenodo.7830131
title: Image dataset for the creation of an automatic system for meteor fall detection

description: Image dataset with sky photos showing the occurrence or non-occurrence of falling meteors. The database comprises 7,000 images in JPEG format -- 3,850 (55%) images show the event of falling meteors, and 3,150 (45%) images show no meteors. Different instruments captured the photos from 2014 to 2023. We used the images to train a deep-learning neural network for an automatic falling meteor detector. The primary image data sources were the Brazilian Meteor Observation Network (BRAMON -- http://www.bramonmeteor.org), UK Meteor Network (UKMON -- https://ukmeteornetwork.co.uk), and <em>Base des Observateurs Amateurs de Météores</em> (BOAM -- http://boam.fr) repositories. <strong>Folders Structure</strong> We divided the folder structure into two levels. In the first level, we have two folders: RawImages, which holds images with captions stored in the repositories; and CroppedImages, which contains images without the captions (we cropped a band of 24 pixels in the lower part of the image). In the second level, in each of the previous folders, we have another two folders: meteor, which has images with meteors; and non-meteors, with images without occurrences of meteors. <strong>Naming pattern for the files</strong> The naming pattern in the meteor folder follows the format &lt;source&gt;_&lt;date&gt;_&lt;id&gt;.jpg where: &lt;source&gt; is one of the 3 data sources: bramon, ukmon, or boam. &lt;date&gt; is the date-time the instrument captured the image in the format yyyymmdd_hhnnss (y:year, m:month, d:day, h:hours, n:minutes, s:seconds). &lt;id&gt; is an identifier from a specific source to avoid date-time conflicts: BRAMON: radiant identifier. UKMON: station identifier. BOAM: station identifier. For the non-meteor folder, the naming pattern is &lt;source&gt;_&lt;date&gt;_nonmeteor.jpg to avoid homonyms (with the same date-time) and to identify that they are images of non-meteors.
DOI: 10.3886/e192374
title: THE INTERPLAY BETWEEN FISCAL INSTITUTIONS AND THE GREAT RECESSION: EVIDENCE FROM U.S. SCHOOL DISTRICTS

description: Recessions may disproportionally impact school districts, especially with established fiscal institutions and policies including balanced budget requirements, tax and expenditure limitations, and school finance reforms. Analyzing the Great Recession and school districts in the United States between 2003 and 2016, we estimate difference-in-differences models leveraging variation in state recession severity to evaluate revenue and expenditure impacts as well as measure differential recession effects for districts exposed to and not exposed to fiscal institutions and policies. While revenues and expenditures increased relative to pre-recession levels in all districts, increases are much larger in school districts with less severe than more severe recessions. Balance budget requirements exacerbate recession effects for low-income districts and local tax and expenditure limitations intensify recession effects for high-income districts. School finance reforms worsen recession effects for all districts. Our findings can aid districts in understanding potential recessionary impacts given their prior established fiscal policies and institutions.
DOI: 10.3886/e192374v1
title: THE INTERPLAY BETWEEN FISCAL INSTITUTIONS AND THE GREAT RECESSION: EVIDENCE FROM U.S. SCHOOL DISTRICTS

description: Recessions may disproportionally impact school districts, especially with established fiscal institutions and policies including balanced budget requirements, tax and expenditure limitations, and school finance reforms. Analyzing the Great Recession and school districts in the United States between 2003 and 2016, we estimate difference-in-differences models leveraging variation in state recession severity to evaluate revenue and expenditure impacts as well as measure differential recession effects for districts exposed to and not exposed to fiscal institutions and policies. While revenues and expenditures increased relative to pre-recession levels in all districts, increases are much larger in school districts with less severe than more severe recessions. Balance budget requirements exacerbate recession effects for low-income districts and local tax and expenditure limitations intensify recession effects for high-income districts. School finance reforms worsen recession effects for all districts. Our findings can aid districts in understanding potential recessionary impacts given their prior established fiscal policies and institutions.
DOI: 10.6084/m9.figshare.23547933
title: <em>Comparison of changes in the knowledge-based economy index and its impact on the GDP growth of countries over 12 years during the exponential GDP growth period of leading countries (China, India) from 2000 to 2012 </em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.6084/m9.figshare.23547933.v2
title: <em>Comparison of changes in the knowledge-based economy index and its impact on the GDP growth of countries over 12 years during the exponential GDP growth period of leading countries (China, India) from 2000 to 2012 </em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.6084/m9.figshare.23547933.v1
title: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today

description: Comparison of changes in the knowledge-based economy index and its impact on the GDP growth of countries over 12 years during the exponential GDP growth period of leading countries (China, India) from 2000 to 2012
DOI: 10.6084/m9.figshare.23547993
title: <em> Analysis of correlation between the number of researchers, contract costs for technology transfer, patent activity, and GDP growth dynamics </em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.6084/m9.figshare.23547993.v2
title: <em> Analysis of correlation between the number of researchers, contract costs for technology transfer, patent activity, and GDP growth dynamics </em>

description: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today
DOI: 10.6084/m9.figshare.23547993.v1
title: Five crises of human capital: a pathway to achieving socio-economic parity with developed nations in Russia today

description: Analysis of correlation between the number of researchers, contract costs for technology transfer, patent activity, and GDP growth dynamics
DOI: 10.5281/zenodo.8066491
title: Data sets for scattering emulators in momentum space

description: Interaction data files used to generate the plots for the paper ''Wave-function-based emulation for nucleon-nucleon scattering in momentum space'' by Garcia, Drischler, Furnstahl, Melendez, and Zhang (DOI: 10.1103/PhysRevC.107.054001).
description: This work was supported in part by the National Science Foundation Award Nos. PHY-1913069 and PHY-2209442 and the NSF CSSI program under award no. OAC-2004601 (BAND Collaboration), and the NUCLEI SciDAC Collaboration under U.S. Department of Energy MSU subcontract no. RC107839-OSU. This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Nuclear Physics, under the FRIB Theory Alliance Award No. DE-SC0013617.
DOI: 10.5281/zenodo.8066490
title: Data sets for scattering emulators in momentum space

description: Interaction data files used to generate the plots for the paper ''Wave-function-based emulation for nucleon-nucleon scattering in momentum space'' by Garcia, Drischler, Furnstahl, Melendez, and Zhang (DOI: 10.1103/PhysRevC.107.054001).
description: This work was supported in part by the National Science Foundation Award Nos. PHY-1913069 and PHY-2209442 and the NSF CSSI program under award no. OAC-2004601 (BAND Collaboration), and the NUCLEI SciDAC Collaboration under U.S. Department of Energy MSU subcontract no. RC107839-OSU. This material is based upon work supported by the U.S. Department of Energy, Office of Science, Office of Nuclear Physics, under the FRIB Theory Alliance Award No. DE-SC0013617.
DOI: 10.6073/pasta/1f8f789152442a978568ef422ceafb82
title: Prieta streams- Discharge and water level

description: Water level measuraments as part of the Stream Flow Reduction Experiment (StreamFRE). Background: Water level data has been collected in two tributaries of the Quebrada Prieta stream since 2016, at the inception of the StreamFRE project. This file contains water level data since 2016. Water level is measured using an Onset HOBO depth water level data logger (modelo U20L-04). Raw data files are corrected using a reference stage height at the site and Barometric data collected at Prieta with a similar sensor placed outside the water. Water level data is logged continuously every 15 minutes. This is a long-term monitoring of water discharge and water level at Prieta Stream. The monitoring point is located at Pool 0: which is the same location where we sample stream chemistry. Measurements are taken automatically with a pressure transducer: every 15 minutes. Measure are originally of pressure: which are translated to water level using the reference gauge. Using an equation provided by Dr. Fred Scatena: water level is converted into discharge. Stage height to discharge equation created by Fred N Scatena used from 2006 to 3-26-2013 10 AM: discharge (m3/sec) = 1.095 - 1.585 * stage + 0.578 * stage * stage Stage height to discharge equation created by William H McDowell and Jody Potter used from 3-26-2013 10:15 to present: discharge (m3/sec) = 0.0005*((stage)^8.8846)*35.314666 Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25934/pr00001466.1
title: Available IPD datapackage for study 'A Multinational, Randomized, Double-blind Study, Comparing the Efficacy of Aflibercept Once Every 2 Weeks Versus Placebo in Patients With Metastatic Colorectal Cancer (MCRC) Treated With Irinotecan / 5-FU Combination (FOLFIRI) After Failure of an Oxaliplatin Based Regimen'

description: The main objective of the study was to evaluate the effectiveness of aflibercept (versus placebo) in increasing the overall survival in participants with metastatic colorectal cancer treated with FOLFIRI (Irinotecan, 5-Fluorouracil, and Leucovorin) and that have previously failed an oxaliplatin based treatment for metastatic disease. The secondary objectives were to compare progression-free survival, to evaluate overall response rate, to evaluate the safety profile, to assess immunogenicity of intravenous (IV) aflibercept, and to assess pharmacokinetics of IV aflibercept in both treatment arms.
DOI: 10.5517/ccdc.csd.cc2f9pl1
title: CCDC 2243643: Experimental Crystal Structure Determination

description: Related Article: Xi Chen, Zhe Zhang, Wei-Yu Shi, Ya-Nan Ding, Yu-Yong Luan, Yan-Chong Huang, Qiang Wang, Xue-Yuan Liu, Yong-Min Liang|2023|Org.Lett.|25|4456|doi:10.1021/acs.orglett.3c01361
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f9pm2
title: CCDC 2243644: Experimental Crystal Structure Determination

description: Related Article: Xi Chen, Zhe Zhang, Wei-Yu Shi, Ya-Nan Ding, Yu-Yong Luan, Yan-Chong Huang, Qiang Wang, Xue-Yuan Liu, Yong-Min Liang|2023|Org.Lett.|25|4456|doi:10.1021/acs.orglett.3c01361
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f9qp5
title: CCDC 2243677: Experimental Crystal Structure Determination

description: Related Article: Dwaipayan Das, Agniva Das, Saiful Islam, Asish R. Das, Adrita Banerjee, Romit Majumder, Debasish Bandyopadhyay|2023|Org.Lett.|25|4493|doi:10.1021/acs.orglett.3c01455
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ffsm9
title: CCDC 2247581: Experimental Crystal Structure Determination

description: Related Article: D. Havlíček, S. Tepavitcharova, M. Fridrichová, J. Plocek, R. Gergulova, D. Rabadjieva|2023|J.Mol.Struct.|1290|135972|doi:10.1016/j.molstruc.2023.135972
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.