cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6953876.v1
title: Additional file 3: of A mathematical model of CO2, O2 and N2 exchange during venovenous extracorporeal membrane oxygenation

description: This file contains the output of the program for the validation against Zanellaâ s model. Each worksheet contains the output of the program and graphs generated from this output, corresponding to one of Zanellaâ s figures. (XLSX 155Â kb)
DOI: 10.6084/m9.figshare.6953870
title: Additional file 2: of A mathematical model of CO2, O2 and N2 exchange during venovenous extracorporeal membrane oxygenation

description: This file contains the output of the program for the scenarios modelled. Each worksheet contains the output for a single scenario. (XLSX 236Â kb)
DOI: 10.6084/m9.figshare.6953870.v1
title: Additional file 2: of A mathematical model of CO2, O2 and N2 exchange during venovenous extracorporeal membrane oxygenation

description: This file contains the output of the program for the scenarios modelled. Each worksheet contains the output for a single scenario. (XLSX 236Â kb)
DOI: 10.6084/m9.figshare.6953858
title: Additional file 7: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S3. List of chromosomal core genome genes used. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.6953858.v1
title: Additional file 7: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S3. List of chromosomal core genome genes used. (XLSX 136 kb)
DOI: 10.6084/m9.figshare.6953846
title: Additional file 6: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S2. Unique integration sites for MGEs in IncK and IncI plasmids of the present collection of 164 CMY-2 producing E. coli isolates of various origins. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6953846.v1
title: Additional file 6: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S2. Unique integration sites for MGEs in IncK and IncI plasmids of the present collection of 164 CMY-2 producing E. coli isolates of various origins. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.6953804
title: Additional file 1: of Epidemiology and surveillance of human animal-bite injuries and rabies post-exposure prophylaxis, in selected counties in Kenya, 2011â 2016

description: Kenya animal bites dataset. (XLSX 1570 kb)
DOI: 10.6084/m9.figshare.6953804.v1
title: Additional file 1: of Epidemiology and surveillance of human animal-bite injuries and rabies post-exposure prophylaxis, in selected counties in Kenya, 2011â 2016

description: Kenya animal bites dataset. (XLSX 1570 kb)
DOI: 10.6084/m9.figshare.6953786
title: Additional file 4: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Hypopitys monotropa, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 6215 kb)
DOI: 10.6084/m9.figshare.6953786.v1
title: Additional file 4: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Hypopitys monotropa, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 6215 kb)
DOI: 10.6084/m9.figshare.6953771
title: Additional file 3: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Epipogium roseum, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 5621 kb)
DOI: 10.6084/m9.figshare.6953771.v1
title: Additional file 3: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Epipogium roseum, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 5621 kb)
DOI: 10.6084/m9.figshare.6953765
title: Additional file 1: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, 2008â 2013, Germany (selection for whole genome sequencing). (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6953765.v1
title: Additional file 1: of Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

description: Table S1. Characteristics of 164 CMY-2 -producing Escherichia coli isolates from different sources, 2008â 2013, Germany (selection for whole genome sequencing). (XLSX 26 kb)
DOI: 10.6084/m9.figshare.6953756
title: Additional file 2: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Epipogium aphyllum, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 7027 kb)
DOI: 10.6084/m9.figshare.6953759
title: Additional file 2: of Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers

description: Table S2. FAO signature expression and outcome in colorectal cancer datasets. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6953756.v1
title: Additional file 2: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Longest open reading frames from major isoforms of the transcripts of Epipogium aphyllum, after removal of low-coverage transcripts and contamination. FASTA-headers were created by TransDecoder. (ZIP 7027 kb)
DOI: 10.6084/m9.figshare.6953759.v1
title: Additional file 2: of Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers

description: Table S2. FAO signature expression and outcome in colorectal cancer datasets. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6953747
title: Additional file 2: of International pilot external quality assessment scheme for analysis and reporting of circulating tumour DNA

description: Table S2. Description: Detailed overview of the mutation detection techniques used by the EQA participants. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6953750
title: Additional file 1: of Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers

description: Table S1. Published gene expression datasets analysed in this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6953747.v1
title: Additional file 2: of International pilot external quality assessment scheme for analysis and reporting of circulating tumour DNA

description: Table S2. Description: Detailed overview of the mutation detection techniques used by the EQA participants. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6953750.v1
title: Additional file 1: of Fatty acid oxidation is associated with proliferation and prognosis in breast and other cancers

description: Table S1. Published gene expression datasets analysed in this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.6953744
title: Additional file 1: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Table S1. Information on transcriptome data. Table S2. Sources of genome sequences. Table S3. List of 1–1 orthologs between Arabidopsis thaliana and Epipogium aphyllum. Table S4. List of 1–1 orthologs between Arabidopsis thaliana and Epipogium roseum. Table S5. List of 1–1 orthologs between Arabidopsis thaliana and Hypopitys monotropa. Table S6. Complete list of GO terms for which the fractions of genes differed significantly among Epipogium, Hypopitys monotropa and their photosynthetic relatives. Table S7. Detailed statistics of the transcriptome assemblies. Table S8. Analysis of the completeness of the assemblies. Table S9. Proportions of genes whose products are targeted to various organelles relative to the total numbers of genes in the species according to TargetP analysis. Only genes with complete 5′ ends and at least one assigned GO term are considered. Table S10. Presence of genes of interest in the studied species and selective pressures acting on them. Table S11. GC-content of concatenated genes’ sequences. Table S12. Results of a search for possible substitutes for ribosomal proteins whose genes have been lost from the plastomes of Epipogium and Hypopitys monotropa. (XLSX 5745 kb)
DOI: 10.6084/m9.figshare.6953741
title: Additional file 9: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S7. The 10 distinct motifs found in GhLOX genes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6953741.v1
title: Additional file 9: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S7. The 10 distinct motifs found in GhLOX genes. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.6953744.v1
title: Additional file 1: of RNA-seq highlights parallel and contrasting patterns in the evolution of the nuclear genome of fully mycoheterotrophic plants

description: Table S1. Information on transcriptome data. Table S2. Sources of genome sequences. Table S3. List of 1–1 orthologs between Arabidopsis thaliana and Epipogium aphyllum. Table S4. List of 1–1 orthologs between Arabidopsis thaliana and Epipogium roseum. Table S5. List of 1–1 orthologs between Arabidopsis thaliana and Hypopitys monotropa. Table S6. Complete list of GO terms for which the fractions of genes differed significantly among Epipogium, Hypopitys monotropa and their photosynthetic relatives. Table S7. Detailed statistics of the transcriptome assemblies. Table S8. Analysis of the completeness of the assemblies. Table S9. Proportions of genes whose products are targeted to various organelles relative to the total numbers of genes in the species according to TargetP analysis. Only genes with complete 5′ ends and at least one assigned GO term are considered. Table S10. Presence of genes of interest in the studied species and selective pressures acting on them. Table S11. GC-content of concatenated genes’ sequences. Table S12. Results of a search for possible substitutes for ribosomal proteins whose genes have been lost from the plastomes of Epipogium and Hypopitys monotropa. (XLSX 5745 kb)
DOI: 10.6084/m9.figshare.6953723
title: Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.6953723.v1
title: Additional file 8: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S6. Subcellular localization of LOX gene family in four species of cotton. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.6953696
title: Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6953696.v1
title: Additional file 6: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S5. Protein sequences used for construction of phylogenetic tree. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.6953681
title: Additional file 5: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S4. Similarity index of duplicated gene pairs between At to A2 and Dt to D5 subgenomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6953681.v1
title: Additional file 5: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S4. Similarity index of duplicated gene pairs between At to A2 and Dt to D5 subgenomes. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.6953669
title: Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953669.v1
title: Additional file 4: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S3. Chromosomal location of LOX gene family in four species of cotton. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953666
title: MOESM1 of Data Assimilation Methods for Neuronal State and Parameter Estimation

description: Supplementary material (ZIP 7 kB)
DOI: 10.6084/m9.figshare.6953666.v1
title: MOESM1 of Data Assimilation Methods for Neuronal State and Parameter Estimation

description: Supplementary material (ZIP 7 kB)
DOI: 10.6084/m9.figshare.6953645
title: Additional file 3: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S2. Properties of LOX gene family in four species of cotton. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6953645.v1
title: Additional file 3: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S2. Properties of LOX gene family in four species of cotton. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6953627
title: Additional file 7: of F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif

description: Table S2. Clades of Endo VII motif-containing proteins as shown in Fig. 5. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6953621
title: Additional file 1: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S1. Nomenclature of LOX gene family in four species of cotton. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953627.v1
title: Additional file 7: of F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif

description: Table S2. Clades of Endo VII motif-containing proteins as shown in Fig. 5. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.6953621.v1
title: Additional file 1: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S1. Nomenclature of LOX gene family in four species of cotton. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953591
title: Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6953591.v1
title: Additional file 11: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S9. GhLOX genes tissue expression profile. The data represents the FPKM values. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.6953576
title: Additional file 10: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S8. cis-acting elements in the promoters of GhLOX genes. The values represent the numbers of specific cis-acting elements in each GhLOX genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953576.v1
title: Additional file 10: of Genome-wide identification of lipoxygenase gene family in cotton and functional characterization in response to abiotic stresses

description: Table S8. cis-acting elements in the promoters of GhLOX genes. The values represent the numbers of specific cis-acting elements in each GhLOX genes. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6953561
title: Additional file 2: of F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif

description: Table S1. Endo VII motif-containing proteins. Proteins containing the Endo VII motif were revealed by PSI-BLAST searches. In the last column, the position of the Endo VII motif in a protein is shown. The Endo VII motif of a protein could be in the C terminus (C), the N terminus (N), or in the middle (indicated by residue numbers/full length of a protein). In the same column, F-CphI and Endo VII indicate that a protein aligns with the full length of F-CphI or Endo VII, respectively. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.6953561.v1
title: Additional file 2: of F-CphI represents a new homing endonuclease family using the Endo VII catalytic motif

description: Table S1. Endo VII motif-containing proteins. Proteins containing the Endo VII motif were revealed by PSI-BLAST searches. In the last column, the position of the Endo VII motif in a protein is shown. The Endo VII motif of a protein could be in the C terminus (C), the N terminus (N), or in the middle (indicated by residue numbers/full length of a protein). In the same column, F-CphI and Endo VII indicate that a protein aligns with the full length of F-CphI or Endo VII, respectively. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.6953522
title: Additional file 4: of Outcomes of community-based and home-based pulmonary rehabilitation for pneumoconiosis patients: a retrospective study

description: File name: HBRP.xlsx. Home based rehabilitation program. The file contains the data of treatment outcomes for patients who participated in home based pulmonary rehabilitation program. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6953522.v1
title: Additional file 4: of Outcomes of community-based and home-based pulmonary rehabilitation for pneumoconiosis patients: a retrospective study

description: File name: HBRP.xlsx. Home based rehabilitation program. The file contains the data of treatment outcomes for patients who participated in home based pulmonary rehabilitation program. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.6953507
title: Additional file 3: of Outcomes of community-based and home-based pulmonary rehabilitation for pneumoconiosis patients: a retrospective study

description: File name: CBRP.xlsx. Title of data: Community based rehabilitation program. The file contains the data of treatment outcomes for patients who participated in community based pulmonary rehabilitation program. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.6953507.v1
title: Additional file 3: of Outcomes of community-based and home-based pulmonary rehabilitation for pneumoconiosis patients: a retrospective study

description: File name: CBRP.xlsx. Title of data: Community based rehabilitation program. The file contains the data of treatment outcomes for patients who participated in community based pulmonary rehabilitation program. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.6953486
title: MOESM2 of Fate of the UPR marker protein Kar2/Bip and autophagic processes in fed-batch cultures of secretory insulin precursor producing Pichia pastoris

description: Additional file 2. HPLC–MS/MS analysis of protein band at approx. 35 kDa.
DOI: 10.6084/m9.figshare.6953486.v1
title: MOESM2 of Fate of the UPR marker protein Kar2/Bip and autophagic processes in fed-batch cultures of secretory insulin precursor producing Pichia pastoris

description: Additional file 2. HPLC–MS/MS analysis of protein band at approx. 35 kDa.
DOI: 10.6084/m9.figshare.6953357
title: Early Cambrian alkaline volcanism on the southern margin of Laurentia: evidence in the volcaniclastic units from the Puerto Blanco Formation in the Caborca block, NW Mexico

description: Volcaniclastic units are exposed at the base of the Puerto Blanco Formation in the Caborca region, northwestern Mexico. The lower unit reveals the presence of Early Cambrian mafic volcanism in this region. It consists of a volcano-sedimentary sequence represented by tuffaceous conglomerates, agglomerates, lapillistones, tuffs, and altered mafic volcanic flows. Petrographic analysis classified the volcanic clasts as albite-sphene-calcite-actinolite granofels, with a moderate to intense hydrothermal alteration, precisely characterized by EPMA analysis. Albite-actinolite geothermometry indicates temperatures from 400 to 500°C, suggesting metamorphic conditions in the upper temperature greenschist facies. Geochemistry analysis shows a high TiO<sub>2</sub> basic–ultrabasic volcanism that originated the volcanic clasts. Rock protoliths were studied using immobile trace elements, which classified them as OIB-type alkaline basalts with the characteristic spider hump-shaped pattern, situated in an anorogenic intracontinental tectonic setting with enriched mantle signatures. <sup>40</sup>Ar/<sup>39</sup>Ar geochronology shows metamorphic ages of 52.58 ± 2.0 and 91.67 ± 0.55 Ma, consistent with the emplacement of Laramidic granitoids identified in the region. Possible correlations of this alkaline volcanism include the Southern Oklahoma Aulacogen and the late stages of the rifting of north western Laurentia represented in western United States.
DOI: 10.6084/m9.figshare.6953357.v1
title: Early Cambrian alkaline volcanism on the southern margin of Laurentia: evidence in the volcaniclastic units from the Puerto Blanco Formation in the Caborca block, NW Mexico

description: Volcaniclastic units are exposed at the base of the Puerto Blanco Formation in the Caborca region, northwestern Mexico. The lower unit reveals the presence of Early Cambrian mafic volcanism in this region. It consists of a volcano-sedimentary sequence represented by tuffaceous conglomerates, agglomerates, lapillistones, tuffs, and altered mafic volcanic flows. Petrographic analysis classified the volcanic clasts as albite-sphene-calcite-actinolite granofels, with a moderate to intense hydrothermal alteration, precisely characterized by EPMA analysis. Albite-actinolite geothermometry indicates temperatures from 400 to 500°C, suggesting metamorphic conditions in the upper temperature greenschist facies. Geochemistry analysis shows a high TiO<sub>2</sub> basic–ultrabasic volcanism that originated the volcanic clasts. Rock protoliths were studied using immobile trace elements, which classified them as OIB-type alkaline basalts with the characteristic spider hump-shaped pattern, situated in an anorogenic intracontinental tectonic setting with enriched mantle signatures. <sup>40</sup>Ar/<sup>39</sup>Ar geochronology shows metamorphic ages of 52.58 ± 2.0 and 91.67 ± 0.55 Ma, consistent with the emplacement of Laramidic granitoids identified in the region. Possible correlations of this alkaline volcanism include the Southern Oklahoma Aulacogen and the late stages of the rifting of north western Laurentia represented in western United States.