cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/107918
title: Gravimeter data collected during research cruise MGL1214 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107911
title: Gyrocompass data collected during research cruise MGL1214 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478543
title: Prevalence of smoking and clinical characteristics in fibromuscular dysplasia. The ARCADIA-POL study

description: <b>Purpose:</b> Smoking was identified as a potential factor contributing to fibromuscular dysplasia (FMD). To evaluate the prevalence of smoking and clinical characteristics in FMD subjects. <b>Material and Methods:</b> We analysed 190 patients with confirmed FMD in at least one vascular bed. The rate of smokers in FMD patients was compared to that in two control groups selected from a nationwide survey. <b>Results:</b> The rate of smokers in FMD patients was 42.6%. There were no differences in frequency of smokers between FMD patients and: a group of 994 matched control subjects from general population and a group of matched hypertensive subjects. There were no differences in the characteristics of FMD (including rates of multisite FMD and significant renal artery stenosis) and its complications (including rates of dissections and aneurysms) between smokers and non-smokers. Smokers as compared with non-smokers were characterized by higher left ventricle mass index. <b>Conclusions:</b> There is no difference in the rate of smokers between FMD patients and subjects from the general population. Moreover, we did not find any association between smoking and clinical characteristics of FMD patients nor its extent and vascular complications. Our results do not support the hypothesis that smoking is involved in the pathophysiology of FMD.
DOI: 10.6084/m9.figshare.7478537
title: Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis

description: The detailed parameters of cases studied in “Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis”.
DOI: 10.6084/m9.figshare.7478513
title: Nuclear genome sequences of Zosterops pallidus

description: This is the genome sequence of Zosterosp pallidus female, field code BN72. These sequences are analysed in the manuscript of Leroy et al. https://doi.org/10.1101/505610.This assembly is available on NCBI (BioProject PRJNA530916<br>
DOI: 10.7284/107916
title: INS (Inertial Navigation System) data collected during research cruise MGL1214 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478513.v1
title: Nuclear genome sequences of Zosterops pallidus

description: This is the genome sequence of Zosterosp pallidus female, field code BN72. These sequences are analysed in the manuscript of Leroy et al. https://doi.org/10.1101/505610.This assembly is available on NCBI (BioProject PRJNA530916<br>
DOI: 10.6084/m9.figshare.7478537.v1
title: Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px 'Times New Roman'} The detailed parameters of cases studied in “Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis”. p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px 'Times New Roman'}
DOI: 10.6084/m9.figshare.7478543.v2
title: Prevalence of smoking and clinical characteristics in fibromuscular dysplasia. The ARCADIA-POL study

description: <b>Purpose:</b> Smoking was identified as a potential factor contributing to fibromuscular dysplasia (FMD). To evaluate the prevalence of smoking and clinical characteristics in FMD subjects. <b>Material and Methods:</b> We analysed 190 patients with confirmed FMD in at least one vascular bed. The rate of smokers in FMD patients was compared to that in two control groups selected from a nationwide survey. <b>Results:</b> The rate of smokers in FMD patients was 42.6%. There were no differences in frequency of smokers between FMD patients and: a group of 994 matched control subjects from general population and a group of matched hypertensive subjects. There were no differences in the characteristics of FMD (including rates of multisite FMD and significant renal artery stenosis) and its complications (including rates of dissections and aneurysms) between smokers and non-smokers. Smokers as compared with non-smokers were characterized by higher left ventricle mass index. <b>Conclusions:</b> There is no difference in the rate of smokers between FMD patients and subjects from the general population. Moreover, we did not find any association between smoking and clinical characteristics of FMD patients nor its extent and vascular complications. Our results do not support the hypothesis that smoking is involved in the pathophysiology of FMD.
DOI: 10.6084/m9.figshare.7478537.v3
title: Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis

description: The detailed parameters of cases studied in “Gas Model Considering Thermodynamic Process: Theory and Application in Probabilistic Energy Flow Analysis”.
DOI: 10.7284/107910
title: Magnetometer data collected during research cruise MGL1214 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478483
title: Nuclear genome sequences and annotation of Zosterops borbonicus

description: This is the genome sequence and annotation of Zosterosp borbonicus female field code 15179. These sequences are analysed in the manuscript of Leroy et al. https://doi.org/10.1101/505610.<br>This assembly is available on NCBI (BioProject PRJNA530916, BioSample: SAMN11339519) but does contain the scafolds &lt; 200bp that have been removed prior to NCBI submission.<br><br>Files are :Scaffold_neoW_neoZ.txt : the scaffolds that have been identified as neoW-W, neoW-4A, neoZ-Z and neoZ-4A chromosomes.<br>ZoBo_SOAP_SSPACElongread_PE_MP_PacBio.v2.1.fasta : the genome sequence<br>DeCoSTAR_27avian_ADseq+scaff_Boltz_kT0.1_Lin0.1_M2_Zosterops_borbonicus_ZeFi-ZoBo+DeCoSTAR.agp : Reference-assisted genome organization <br>
DOI: 10.6084/m9.figshare.7478483.v1
title: Nuclear genome sequences and annotation of Zosterops borbonicus

description: This is the genome sequence and annotation of Zosterosp borbonicus female field code 15179. These sequences are analysed in the manuscript of Leroy et al. https://doi.org/10.1101/505610.<br>This assembly is available on NCBI (BioProject PRJNA530916, BioSample: SAMN11339519) but does contain the scafolds &lt; 200bp that have been removed prior to NCBI submission.<br><br>Files are :Scaffold_neoW_neoZ.txt : the scaffolds that have been identified as neoW-W, neoW-4A, neoZ-Z and neoZ-4A chromosomes.<br>ZoBo_SOAP_SSPACElongread_PE_MP_PacBio.v2.1.fasta : the genome sequence<br>DeCoSTAR_27avian_ADseq+scaff_Boltz_kT0.1_Lin0.1_M2_Zosterops_borbonicus_ZeFi-ZoBo+DeCoSTAR.agp : Reference-assisted genome organization <br>
DOI: 10.7284/107914
title: Meteorological Station data collected during research cruise MGL1214 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478381
title: Dataset for paper

description: Dataset (for all proteins one line per proteome) and scripts used to process data<br>
DOI: 10.6084/m9.figshare.7478381.v1
title: Dataset for paper

description: Dataset (for all proteins one line per proteome) and scripts used to process data<br>
DOI: 10.7284/107909
title: Multibeam Echosounder data collected during research cruise MGL1214 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107912
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise MGL1214 using a LDEO pCO2 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107913
title: TSG (Thermosalinograph) data collected during research cruise MGL1214 using a Sea-Bird SBE-21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113515
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1215 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478285
title: Dataset S1

description: Dataset S1. Assembly of S1 and S2 specimens separated into bins.
DOI: 10.7284/113518
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1215 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7478285.v1
title: Dataset S1

description: Dataset S1. Assembly of S1 and S2 specimens separated into bins.
DOI: 10.7284/113519
title: Gravimeter data collected during research cruise MGL1215 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477988
title: Dataset S2

description: Dataset S2. Multiple sequence alignments of protein sequences. Dataset 1, 2 and HGT are included. <br>
DOI: 10.6084/m9.figshare.7477988.v1
title: Dataset S2

description: Dataset S2. Multiple sequence alignments of protein sequences. Dataset 1, 2 and HGT are included. <br>
DOI: 10.7284/113513
title: Gyrocompass data collected during research cruise MGL1215 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477931
title: Table S7

description: Genes present only in S2.bin1 and absent in N. flagelliforme CCNUN1.
DOI: 10.7284/113516
title: INS (Inertial Navigation System) data collected during research cruise MGL1215 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477925
title: Motion-in-depth perception and prey capture in the praying mantis Sphodromantis lineola: DATA

description: Data and plotting scripts supporting the paper "Motion-in-depth perception and prey capture in the praying mantis <i>Sphodromantis lineola</i>". The data are from experiments that investigated the role of binocular and monocular cues to motion in depth perception during prey capture by mantises (<i>Sphodromantis lineola</i>) in different experiments as detailed in the paper. The datafiles for the mantises detail the occurrence and number of strikes in response to different disparity, looming and motion conditions.
DOI: 10.6084/m9.figshare.7477931.v1
title: Table S7

description: Genes present only in S2.bin1 and absent in N. flagelliforme CCNUN1.
DOI: 10.7284/113514
title: Meteorological Station data collected during research cruise MGL1215 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113512
title: Speedlog data collected during research cruise MGL1215 using a Furuno DS-50 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477871
title: Supplementary Material for: ATM-Mediated Phosphorylation of Cortactin Involved in Actin Polymerization Promotes Breast Cancer Cells Migration and Invasion

description: <b><i>Background/Aims:</i></b> The ataxia-telangiectasia mutated (ATM) protein kinase is critical for the maintenance of genomic stability and acts as tumor suppressor. Although evidence shows that a DNA damage-independent ATM (oxidized ATM) may be involved in cancer progression, the underlying mechanism is still unclear. <b><i>Methods:</i></b> Immunohistochemistry, immunofluorescence and western blotting were applied to detect the levels of oxidized ATM. Transwell assay was used to detect the cell migration and invasion abilities in different treatments. Quantitative phosphoproteome analysis was performed using hypoxic BT549 cells, in the presence or absence of Ku60019, a specific inhibitor of ATM kinase. The phosphorylated cortactin, the target protein of oxidized ATM, was confirmed by immunoprecipitation-western blots and <i>in vitro</i> kinase assay. The functions of phosphorylated cortactin were studied by specific short hairpin RNA, site-directed mutation, transwell assay, and actin polymerization assay. <b><i>Results:</i></b> Enhanced oxidized ATM proteins were present not only in the advanced and invasive breast tumor tissues but also malignant hypoxic breast cancer cells, in the absence of DNA damage. Loss of ATM expression or inhibiting oxidized ATM kinase activity reduced breast cancer cell migration and invasion. Using quantitative phosphoproteomics approach, 333 oxidized ATM target proteins were identified, some of these proteins govern key signaling associated with gap junction, focal adhesion, actin cytoskeleton rearrangement. Cortactin, one of the biggest changed phospho-protein, is a novel oxidized ATM-dependent target in response to hypoxia. Mechanically, we reveal that hypoxia-activated ATM can enhance the binding affinity of cortactin with Arp2/3 complex by phosphorylating cortactin at serine 113, and as a result, in favor of breast cancer cell migration and invasion. <b><i>Conclusion</i></b><b><i>:</i></b> Oxidized ATM can phosphorylate cortactin at serine 113, playing a critical role in promoting breast tumor cell mobility and invasion via actin polymerization.
DOI: 10.7284/107933
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1216 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477871.v1
title: Supplementary Material for: ATM-Mediated Phosphorylation of Cortactin Involved in Actin Polymerization Promotes Breast Cancer Cells Migration and Invasion

description: <b><i>Background/Aims:</i></b> The ataxia-telangiectasia mutated (ATM) protein kinase is critical for the maintenance of genomic stability and acts as tumor suppressor. Although evidence shows that a DNA damage-independent ATM (oxidized ATM) may be involved in cancer progression, the underlying mechanism is still unclear. <b><i>Methods:</i></b> Immunohistochemistry, immunofluorescence and western blotting were applied to detect the levels of oxidized ATM. Transwell assay was used to detect the cell migration and invasion abilities in different treatments. Quantitative phosphoproteome analysis was performed using hypoxic BT549 cells, in the presence or absence of Ku60019, a specific inhibitor of ATM kinase. The phosphorylated cortactin, the target protein of oxidized ATM, was confirmed by immunoprecipitation-western blots and <i>in vitro</i> kinase assay. The functions of phosphorylated cortactin were studied by specific short hairpin RNA, site-directed mutation, transwell assay, and actin polymerization assay. <b><i>Results:</i></b> Enhanced oxidized ATM proteins were present not only in the advanced and invasive breast tumor tissues but also malignant hypoxic breast cancer cells, in the absence of DNA damage. Loss of ATM expression or inhibiting oxidized ATM kinase activity reduced breast cancer cell migration and invasion. Using quantitative phosphoproteomics approach, 333 oxidized ATM target proteins were identified, some of these proteins govern key signaling associated with gap junction, focal adhesion, actin cytoskeleton rearrangement. Cortactin, one of the biggest changed phospho-protein, is a novel oxidized ATM-dependent target in response to hypoxia. Mechanically, we reveal that hypoxia-activated ATM can enhance the binding affinity of cortactin with Arp2/3 complex by phosphorylating cortactin at serine 113, and as a result, in favor of breast cancer cell migration and invasion. <b><i>Conclusion</i></b><b><i>:</i></b> Oxidized ATM can phosphorylate cortactin at serine 113, playing a critical role in promoting breast tumor cell mobility and invasion via actin polymerization.
DOI: 10.7284/107922
title: Expendable Probe data collected during research cruise MGL1216 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477823
title: Supplementary Material for: Building a Competing Endogenous RNA Network to Find Potential Long Non-Coding RNA Biomarkers for Pheochromocytoma

description: <b><i>Background/Aims:</i></b> Accumulating evidence has shown that long non-coding RNAs (lncRNAs) in competing endogenous RNA (ceRNA) networks play crucial roles in tumor survival and patient prognosis; however, studies investigating ceRNA networks in pheochromocytoma (PCC) are lacking. In this study, we investigated the pathogenesis of PCC and whether lncRNAs acting through ceRNAs networks were associated with prognosis. <b><i>Methods:</i></b> A total of 183 PCC samples and 3 control samples from The Cancer Genome Atlas database were analyzed. The Empirical Analysis of Digital Gene Expression Data package in R (edgeR) was used to analyze differentially expressed RNAs. Biological processes and pathways functional enrichment analysis were performed based on the Database for Annotation, Visualization, and Integrated Discovery (DAVID) database. LncRNA/mRNA/miRNA ceRNA network was constructed by Cytoscape v3.0 software based on the differentially expressed RNAs Survival package in R was used to perform survival analysis. <b><i>Results:</i></b> In total, 554 differentially expressed lncRNAs, 1775 mRNAs and 40 miRNAs were selected for further analysis. Subsequently, 23 lncRNAs, 22 mRNAs, and 6 miRNAs were included in the constructed ceRNA network. Meanwhile, two of the 23 lncRNAs (C9orf147 and BSN-AS2) were identified as independent predictors of overall survival in PCC patients (P&lt; 0.05). <b><i>Conclusion:</i></b> This study improves the understanding of lncRNA-related ceRNA networks in PCC and suggests that the lncRNAs C9orf147 and BSN-AS2 could be independent prognostic biomarkers and potential therapeutic targets for PCC.
DOI: 10.7284/107929
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1216 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107931
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1216 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107924
title: Gyrocompass data collected during research cruise MGL1216 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107930
title: INS (Inertial Navigation System) data collected during research cruise MGL1216 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107928
title: Meteorological Station data collected during research cruise MGL1216 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107923
title: Multibeam Echosounder data collected during research cruise MGL1216 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/107925
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise MGL1216 using a LDEO pCO2 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477781
title: Supplementary Material for: Characterization and Beige Adipogenic Potential of Human Embryo White Adipose Tissue-Derived Stem Cells

description: <b><i>Background/Aims:</i></b> Brown and beige adipocytes are widely recognized as potential therapeutic targets to treat obesity and related metabolic disorders, and the recruitment of brown and beige adipocytes is an essential aspect that requires attention. Although many methods of activating brown adipocytes or generating beige adipocytes have been reported, the limited number and sources are the biggest challenges. The number of white adipocytes is much greater than the number of brown adipocytes, both in human adults and fetuses. Unfortunately, human adult white adipose tissue-derived stem cell (aWAsc) has little beige adipogenic potential. However, the characteristics and beige adipogenic potential of human embryo-derived white adipose stem cells (eWAsc) still need to be investigated. <b><i>Methods:</i></b> To analyze the characteristics and functionality of eWAsc, we analyzed the markers of adipose precursor cells by flow cytometry. Then, differentiation and browning/beiging were induced, and the identifying markers were analyzed by real-time PCR and immunoblot. In addition, more in-depth exploration was performed using RNA-SEQ on eWAsc and aWAsc. <b><i>Results:</i></b> eWAsc was isolated from human embryonic white adipose tissue, and aWAsc was isolated from adult white adipose tissue by collagenase treatment. eWAsc has extreme advantages in adipogenesis capacity and browning/beiging ability in comparison to aWAsc, indicating that eWAsc may possess some special regulatory factors to promote the generation of functional brown/beige adipocytes. Greater exploration was enabled by RNA-SEQ, revealing a large number of differences at the transcriptional levels, including 1263 differentially expressed genes, 657 down- and 605 upregulated, in eWAsc compared to aWAsc. Pathway analysis revealed enrichment in cell cycle, TGF-β signaling pathway, DNA replication, and Hippo signaling pathways. Interestingly, the expression levels of C/EBPα, FGF1 and FST gene, which are related to the maturation of adipocytes, Hippo signaling pathway and TGF-β signaling pathway, were significantly higher in eWAsc than in aWAsc. These may be potential candidates and possible regulatory targets for recruiting beige adipocytes in human adipose tissue. <b><i>Conclusion:</i></b> Overall, we have demonstrated the molecular characteristics and excellent beige adipogenic potential of eWAsc, providing a new reference for studying human adipocytes.
DOI: 10.35078/x1g9ei/ltcfz9
title: Córrego Laranjeira A.jpg

description: :unav
DOI: 10.35078/egnbks/njtwru
title: Capote A.jpg

description: :unav
DOI: 10.35078/x1g9ei/rgzq68
title: Córrego da Fábrica A.jpg

description: :unav
DOI: 10.35078/egnbks/s2u5hn
title: Penas A.jpg

description: :unav
DOI: 10.35078/oztuvy/gzymef
title: Varginha I F.jpg

description: :unav
DOI: 10.35078/egnbks/lhpntq
title: Capãozinho A.jpg

description: :unav
DOI: 10.35078/x1g9ei/cab87w
title: Caldeirão A.jpg

description: :unav
DOI: 10.35078/oztuvy/dljuqp
title: Olhos D`água A.jpg

description: :unav
DOI: 10.35078/oztuvy/m6v4ji
title: Laranjeira B.jpg

description: :unav