cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q2bvq83vg
title: Predictably manipulating photoreceptor light responses to reveal their role in downstream visual responses

description: Computation in neural circuits relies on the judicious use of nonlinear
 circuit components. In many cases, multiple nonlinear components work
 collectively to control circuit outputs. Separating the contributions of
 these different components is difficult, and this limits our understanding
 of the mechanistic basis of many important computations. Here, we
 introduce a tool that permits the design of light stimuli that predictably
 alter rod and cone phototransduction currents - including stimuli that
 compensate for nonlinear properties such as light adaptation. This tool,
 based on well-established models for the rod and cone phototransduction
 cascade, permits the separation of nonlinearities in phototransduction
 from those in downstream circuits. This will allow, for example, direct
 tests of how adaptation in rod and cone phototransduction affects
 downstream visual signals and perception.
description: # Predictably manipulating photoreceptor light responses to reveal their
 role in downstream visual responses
 [https://doi.org/10.5061/dryad.q2bvq83vg](https://doi.org/10.5061/dryad.q2bvq83vg) ## Description of the data and file structure **Primate and mouse cone responses** These are normalized currents - i.e., the measured current (voltage-clamp recording) normalized by the dark current estimated from a saturating flash. Currents are averages of 4-5 repeats of the same stimulus. The file contains responses to the variable mean noise stimulus, in which the mean intensity is changed every 500 ms (primate) or 1s (mouse). Stimulus units are R*/sec The time step is 0.1 ms **Primate and mouse rod responses** These are normalized currents - i.e., the measured current (voltage-clamp recording) normalized by the dark current estimated from a saturating flash. Currents are averages of 4-5 repeats of the same stimulus. The file contains (in order) responses to a family of steps with superimposed flashes, a family of flashes from darkness, and the variable mean noise stimulus (intensity changed every 4 s). Stimulus units are R*/sec The time step is 1 ms ### Files and variables #### File: Figure2-SourceData1.mat **Description:**  ##### Variables * PrimateConeResponses * MouseConeResponses * PrimateRodResponses * MouseRodResponses
DOI: 10.5061/dryad.vx0k6dk23
title: Data from: An antagonistic epigenetic mechanism regulating gene expression in pollen revealed through single-nucleus multiomics

description: MBD6 and MBD7 complexes compete against one another for gene silencing and
 activation, however, the mechanisms are poorly understood. These
 microscopy results support other experiments in our manuscript that
 demonstrate MBD6 and MBD7 compete with one another DNA methylation sites,
 accumulate at DNA methylation using similar mechanisms, and antagonize one
 another at those sites. Furthermore, we express MBD7 using its endogenous
 promoter and reveal a unique localization pattern to primarily around the
 chromocenters near the nucleolus and not always to all chromocenters as
 reported previously. 
description: All of this data was collected using an LSM 980 confocal
 microscope and across experiments laser settings and magnifications were
 kept constant. All experiments were performed on live plant tissue either
 arabidopsis 2-3 week old seedling roots or tobacco leaves. 
description: # Data from: An antagonistic epigenetic mechanism regulating gene
 expression in pollen revealed through single-nucleus multiomics
 [https://doi.org/10.5061/dryad.vx0k6dk23](https://doi.org/10.5061/dryad.vx0k6dk23) ## Description of the data and file structure All microscopy was collected using an LSM 980 confocal microscope with either 2-3 week old seedlings, focused on roots, or on tobacco leaf tissue.  ### Files and variables #### File: Microscopy_Data_MBD6_and_MBD7_Antagonism.zip **Description:**  Files of Arabidopsis gene expression constructs are included in the Zip file and named by the genetic background (e.g. Col-0 (WT), mbd5 mbd6, mbd7, idm2 (lil) mutants etc.) followed by the construct description of promoter used and the gene and fluorescent tag (e.g. MBD7 promoter with MBD7 YFP), followed by supporting information (date of experiment, replicate, etc.).  Files of bimolecular fluorescence (BiFC) assay the constructs are labelled with BiFC, then the protein attached to the N-terminal half of YFP (N) followed by the protein that is attached to the C-terminal half of YFP (C), plant number imaged, and leaf number or if DAPI was used on the sample (e.g. BiFc_MBD6 C term Deletion (N) with ACD15 (C)_Plant 1_leaf1.1.czi).  To open files use either ZEN software for ImageJ (FIJI). Data includes both z-stacks and single images.
DOI: 10.15468/dl.783hza
title: Occurrence Download

description: A dataset containing 4487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngnathus acus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 4487 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004167-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.0zpc8676n
title: AERPAW helikite spectrum measurements at Packapalooza Festival in Aug 2024

description: We conducted a spectrum monitoring experiment using a helikite in an urban
 environment during NC State’s Packapalooza festival in August 2024. The
 helikite was equipped with a software-defined radio (SDR) and global
 positioning system (GPS) receivers and flown for approximately 6 hours,
 starting around noon. The helikite reached an altitude of approximately
 180 meters at its peak. The spectrum was continuously swept up to 6 GHz,
 with each sweep taking about 15 seconds.
description: Spectrum monitoring dataset by a helikite in an urban area, which is
 measured by AERPAW. The dataset is formatted by SigMF. Please find
 instructions in the readme. MATLAB post-processing code for the dataset is
 attached as well. # Dataset README ## Contents 1. **SigMF formatted power
 spectrum raw dataset**: Located in the folder `pow_spec`. 2. **SigMF
 formatted GPS logs**: Located in the folder `GPS_logs`. 3. **SigMF
 formatted spectrum monitoring logs**: Located in the folder `GPS_logs`. 4.
 **SigMF to MATLAB format conversion Python code**: The script
 `sigMF2mat_PW.py` converts SigMF formatted power spectrum data to MATLAB
 format. 5. **SigMF to CSV format conversion Python code**: The script
 `sigMF2csv_GPS.py` converts SigMF formatted GPS logs to CSV format. ##
 Running the Code 1. Run `sigMF2mat_PW.py` to convert the power spectrum
 data into MATLAB format. The output files will be saved in the folder
 `./pow_spec/matfile`. 2. Run `sigMF2csv_GPS.py` to convert the GPS logs
 into CSV format. The output files will be saved in the folder
 `./GPS_logs/csvfile`. 3. Run `sigMF2csv_spec_log.py` to convert the
 spectrum monitoring logs into CSV format. The output files will be saved
 in the folder `./GPS_logs/csvfile`. ## Raw Data Description 1. **Power
 Spectrum**: Each MATLAB file contains `freqs` (in MHz) and `powers` (in
 dBm). The filenames correspond to timestamps representing the data
 collection time. 2. **GPS Logs**: The generated CSV files contain four
 columns: * Column 1: Longitude * Column 2: Latitude * Column 3: Altitude
 (in meters) * Column 4: Timestamp (seconds since epoch time) 3. **Spectrum
 Monitoring Logs**: The generated CSV file contains a single column
 representing the timestamps of center frequency shifts during spectrum
 sweeps. ## SigMF Format This dataset is compliant with **SigMF v1.2**
 standards.\ More information on SigMF can be found here: [SigMF v1.x
 Documentation](https://github.com/gnuradio/SigMF/). ## MATLAB
 Post-Processing After converting the power spectrum data to MATLAB format
 and the logs to CSV format, run the `Post_processing_main.m` script to
 analyze the dataset.
DOI: 10.5061/dryad.hdr7sqvt7
title: Data from: The evolutionary history of the ancient weevil family Belidae (Coleoptera: Curculionoidea) reveals the marks of Gondwana breakup and major floristic turnovers, including the rise of angiosperms

description: The rise of angiosperms to ecological dominance and the breakup of
 Gondwana during the Mesozoic marked major transitions in the evolutionary
 history of insect-plant interactions. To elucidate how contemporary
 trophic interactions were influenced by host plant shifts and
 palaeogeographical events, we integrated molecular data with information
 from the fossil record to construct a timetree for ancient phytophagous
 weevils of the beetle family Belidae. Our analyses indicate that
 crown-group Belidae originated approximately 138 Ma ago in Gondwana,
 associated with Pinopsida (conifer) host plants, with larvae likely
 developing in dead/decaying branches. Belids tracked their host plants as
 major plate movements occurred during Gondwana’s breakup, surviving on
 distant, disjunct landmasses. Some belids shifted to Angiospermae and
 Cycadopsida when and where conifers declined, evolving new trophic
 interactions, including brood-pollination mutualisms with cycads and
 associations with achlorophyllous parasitic angiosperms. Extant radiations
 of belids in the genera Rhinotia (Australian region) and Proterhinus
 (Hawaiian Islands) have relatively recent origins.
description: # Data from: The evolutionary history of the ancient weevil family Belidae
 (Coleoptera: Curculionoidea) reveals the marks of Gondwana breakup and
 major floristic turnovers, including the rise of angiosperms
 [https://doi.org/10.5061/dryad.hdr7sqvt7](https://doi.org/10.5061/dryad.hdr7sqvt7) ## Description of the data and file structure #### \*.fq.gz: NGS sequencing raw data file naming conventions: forward: "specimen number"_"species name".1_paired.fq.gz reverse: "specimen number"_"species name".2_paired.fq.gz
DOI: 10.21223/p3/lcgd4p
title: Dataset for: Advanced clones of group B3 cycle 3, population B with late blight resistance in Oxapampa, 2013

description: The B3C3 population came from crossing the elite clones of B3C2 population, in 2011 under quarantine greenhouses at La Molina. For this, 30,000 genotypes (60 families with 500 seeds each) were planted. At harvest 21685 genotypes, were selected (72%). These selected clones were planted in La Victoria, Huancayo, to increase the number of tubers and make selection for agronomic attributes. Here, 3123 clones (10.41% of the original population) were selected. This dataset is part of the following selection where the selected clones were evaluated for three seasons (2012, 2013 and 2014), in Oxapampa where the environmental conditions (rain, relative humidity, temperature) are great to have a high pressure of late blight allowing us to select clones with resistance to this disease. In 2013-2014 at Oxapampa, the second evaluation of resistance to late blight was conducted. 507 clones were planted in plots of 10 plants with two replications. Furthermore, Variety Kory, semiresistant Amarilis and Yungay, a susceptible variety, were used as controls to the resistant clones. In this experiment, 370 clones were selected, they showed values lower than controls, according to the scale of susceptibility to late blight.
DOI: 10.5061/dryad.3bk3j9kvp
title: Data from: Discovery and description of a remarkable bathypelagic nudibranch, Bathydevius caudactylus, gen. et. sp. nov.

description: We describe an exceptional nudibranch, new to science, from bathypelagic
 depths in the eastern North Pacific Ocean. More than 100 individuals of
 Bathydevius caudactylus gen. et. sp. nov. have been observed in the water
 column at depths between 1013 and 3272 m. Twenty spawning individuals were
 observed on the seafloor at depths between 2269 and 4009 m. Anatomy, diet,
 behavior, bioluminescence, and habitat distinguish this surprising
 nudibranch from all previously described species, and genetic evidence
 supports its placement in a new family.
description: Gene sequences obtained from PCR amplification and Sanger
 sequencing of 18S, COI, and 16S genes for pelagic molluscs, combined with
 data downloaded from GenBank to make a multiple-sequence
 alignment.
description: # Gene alignments for pelagic molluscs Bruce H. Robison(1), Steven H.D.
 Haddock (1,2), Discovery and description of a remarkable bathypelagic
 nudibranch, Bathydevius caudactylus, gen. et. sp. nov., Deep Sea Research
 Part I: Oceanographic Research Papers, Volume 214,(2024),104414. (1)
 Monterey Bay Aquarium Research Institute (2) University of California,
 Santa Cruz https://doi.org/10.5061/dryad.3bk3j9kvp ## Description of the
 data and file structure Alignment files for 18S, COI, 16S of mainly
 nudibranchs and gastropod molluscs. Compiled and cleaned and aligned from
 Genbank downloads along with original sequences of the new species
 *Bathydevius caudactylus*, along with *Phylliroe* sp. as an outgroup.  ##
 Description of software Example R script for collapsing low-support nodes
 and displaying the new tree and saving as PDF
DOI: 10.6084/m9.figshare.31164979
title: Kinetics of calcium release in the GIT influenced by whey protein structures: an <i>in-vitro</i> digestion study using a dynamic model

description: Calcium (Ca), primary consumed through diet, is essential for skeletal health and various other biological functions in humans. While the mechanisms of Ca absorption are well-understood, little is known about the role of food structure properties on Ca release kinetics into the GIT, which may have important implications in Ca uptake. Therefore, the aim of this study was to investigate calcium release kinetics from whey protein matrices with varying structures during gastrointestinal digestion. Whey protein structures (Liquid: storage modulus G′ = 0.18 Pa at 1 Hz; soft gel: 1791 Pa; hard gel: 4103 Pa) with 8% (w/w) protein an equal Ca concentration (25 mM CaCl<sub>2</sub>) were subjected to dynamic in vitro gastric digestion using the Human Gastric Simulator, followed by intestinal digestion of emptied chyme fractions using a static model. Results revealed that both soluble and ionic Ca release from whey protein gels were significantly delayed, compared with the liquid counterpart. Slower Ca release patterns from protein gels in the gastric phase led to a higher soluble Ca content release in the intestinal phase, especially at early stages of digestion. These findings demonstrated that the physical structure of whey protein gels modulates soluble Ca release rates into the gastrointestinal environment. Further research is required to understand the implications of calcium release modulation in absorption efficiency.
DOI: 10.6084/m9.figshare.31164979.v1
title: Kinetics of calcium release in the GIT influenced by whey protein structures: an <i>in-vitro</i> digestion study using a dynamic model

description: Calcium (Ca), primary consumed through diet, is essential for skeletal health and various other biological functions in humans. While the mechanisms of Ca absorption are well-understood, little is known about the role of food structure properties on Ca release kinetics into the GIT, which may have important implications in Ca uptake. Therefore, the aim of this study was to investigate calcium release kinetics from whey protein matrices with varying structures during gastrointestinal digestion. Whey protein structures (Liquid: storage modulus G′ = 0.18 Pa at 1 Hz; soft gel: 1791 Pa; hard gel: 4103 Pa) with 8% (w/w) protein an equal Ca concentration (25 mM CaCl<sub>2</sub>) were subjected to dynamic in vitro gastric digestion using the Human Gastric Simulator, followed by intestinal digestion of emptied chyme fractions using a static model. Results revealed that both soluble and ionic Ca release from whey protein gels were significantly delayed, compared with the liquid counterpart. Slower Ca release patterns from protein gels in the gastric phase led to a higher soluble Ca content release in the intestinal phase, especially at early stages of digestion. These findings demonstrated that the physical structure of whey protein gels modulates soluble Ca release rates into the gastrointestinal environment. Further research is required to understand the implications of calcium release modulation in absorption efficiency.
DOI: 10.15468/dl.7h4qrz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sufflogobius bibarbatus",
 "HasCoordinate is true",
 "DecimalLatitude is greater than -90",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is greater than -180",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2015"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004169-260126135527185/datasets/export for details.
DOI: 10.5061/dryad.8sf7m0czw
title: Supporting data from: Transport phase diagram and anomalous metallicity in superconducting infinite-layer nickelates

description: Despite obvious similarities in their electronic and crystallographic
 structures, it remains unclear whether the interactions that
 shape the normal and superconducting (SC) state properties of
 high-Tc cuprates and infinite-layer nickelates (ILNs) have the
 same origin. This question has been brought into sharper focus with
 recent studies on ILNs of improved crystallinity that reveal a SC
 dome of comparable extent and similar transport properties above
 Tc as the hole-doped cuprates. The evolution of these properties
 in the magnetic-field-induced normal state, however, has yet to
 be determined. Here, we examine the magnetotransport properties
 of new-generation Nd1-xSrxNiO2 films in the T → 0 limit across
 the phase diagram in fields up to 54 T. This extensive study reveals that
 the limiting low-T form of the normal-state resistivity in ILNs exhibits
 non-Fermi-liquid behaviour over an extended doping range inside the SC
 dome, rather than at a singular quantum critical point. While there are
 clear differences in the charge dynamics of ILNs and cuprates, most
 notably in the magnetoresistance, our findings reveal that both systems
 exhibit anomalous metallicity characteristic of a quantum critical phase.
description: # Supporting data from: Transport phase diagram and anomalous metallicity
 in superconducting infinite-layer nickelates This dataset contains four
 Excel files with the raw data used to create the main figures in the
 manuscript. Variables accompanied by units are contained within the Excel
 worksheets. The contents of each data file are explained below.
 NSNO_ZeroField: In-plane resistivity (rho) as a function of Temperature
 (T) in zero applied magnetic field. The third row shows the doping level x
 of each sample. Note the resistivity here is in unit of micro-Ohm
 centimeter (uohm.cm). NSNO_DC_FieldSweeps: In-plane resistivity (rho) as a
 function of Magnetic field up to 34 T, at constant temperature values
 specified in the third row (in unit of K). Four tabs store data in the
 same format for 4 different doping levels (x=0.15, 0.175, 0.20, and
 0.225). Note the resistivity values here are in unit of milli-Ohm
 centimeter (mohm.cm). NSNO_DC_TempSweeps: In-plane resistivity as a
 function of Temperature in zero and large magnetic field up to 34 T, as
 specified in the third row. Resistivity in zero and finite magnetic field
 shown here are measured using identical setup. Eight tabs store data in
 the same format for 8 different doping levels (x=0.175, 0.20, 0.225, 0.25,
 0.275, 0.30, 0.3125, and 0.325). Note the resistivity here is in unit of
 micro-Ohm centimeter (uohm.cm). NSNO_PulsedField: In-plane resistivity as
 a function of Magnetic field in magnetic fields up to 53.7 T, at constant
 temperatures as specified in the third row. Three tabs store data in the
 same format for 3 different doping levels (x=0.15, 0.1625, and 0.175).
 Note the resistivity here is in unit of micro-Ohm centimeter (uohm.cm).
DOI: 10.6084/m9.figshare.31173973
title: <sup>Math stats Data Final</sup>

description: This research has been used in two articles, one examines students' beliefs about statistics and where they get their beliefs and the other examines math anxiety, statistics anxiety and how GPA and Personality factors affect both types of anxiety.
DOI: 10.6084/m9.figshare.31173973.v1
title: <sup>Math stats Data Final</sup>

description: This research has been used in two articles, one examines students' beliefs about statistics and where they get their beliefs and the other examines math anxiety, statistics anxiety and how GPA and Personality factors affect both types of anxiety.
DOI: 10.5061/dryad.n8pk0p35b
title: Data from: Evolution and co-evolution of the suck behaviour, a postcopulatory female resistance trait that manipulates received ejaculate

description: Sexual conflicts over the post-mating fate of received ejaculate can
 favour traits in one sex that are costly to the other. Reciprocally mating
 hermaphrodites face unique challenges as they mate simultaneously in both
 the male and female role, potentially leading to receipt of unwanted
 ejaculate. Reciprocal mating can then give rise to postcopulatory female
 resistance traits that allow manipulation of received ejaculate. A
 putative example is the suck behaviour, observed in the flatworm genus
 Macrostomum. It involves the sperm recipient placing its pharynx over its
 own female genital opening and appearing to suck, likely removing received
 ejaculate after mating. The genus also contains
 hypodermically-inseminating species that presumably exhibit unilateral
 mating and have not been observed to suck. Here, we examine the evolution
 of the suck behaviour in the Macrostomum genus, aiming to document the
 mating behaviour in 64 species. First, we provide videographic evidence
 that ejaculate is indeed removed during the suck behaviour in a
 reciprocally mating species, Macrostomum hamatum. Next, we show positive
 evolutionary correlations between the presence, duration and frequency of
 reciprocal mating behaviour and the suck behaviour, providing clear
 evidence that the suck behaviour co-evolves with reciprocal mating
 behaviour. Finally, we show an association between reproductive behaviour
 and reproductive morphology, suggesting that reproductive morphology can
 be used to infer a species' mating behaviour. Together, our study
 demonstrates sexually antagonistic coevolution leading to the evolution of
 a postcopulatory behavioural trait that functions as a female
 counter-adaptation allowing individuals to gain control over received
 ejaculate in a hermaphroditic sexual system.
description: # Data from: Evolution and co-evolution of the suck behaviour, a
 postcopulatory female resistance trait that manipulates received ejaculate
 ## Descrption of the data files: These movies accompany the research
 article "Evolution and Co-evolution of the Suck Behavior: A
 Postcopulatory Female Resistance Trait that Manipulates Received
 Ejaculate." To create the movies, multiple individuals from 64
 Macrostomum species were collected from diverse locations and habitats
 using various extraction techniques (details are available in the
 article's methodology). The data scored for the movies is given in
 the file "Movies mating data" and the metadata about the movies
 is given in the file "Movie-metadata_Dryad".
DOI: 10.15468/dl.w9355q
title: Occurrence Download

description: A dataset containing 35963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Lindera benzoin"
 ]
}

 The dataset includes 35963 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004168-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.