cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11698605.v1
title: Romanian bee pollen classification and property modelling

description: The 4000–400 cm<sup>−1</sup> spectral information obtained by FTIR-ATR for bee pollen samples of different floral origin from various Romanian counties were used to formulate a method for rapid classification using principal component analysis (PCA) and linear discriminant analysis (LDA) as multivariate statistics tools. Entire IR range spectra were used as input data in both techniques. PCA reduced the problem dimensionality and put in evidence the presence of outliers. LDA, applied for samples characterized by the first 11 principal components (PCA-LDA), clearly separated 10 groups according to botanical and geographical origin, thus representing a base for developing an identification tool of the new pollen samples origin. Furthermore, spectral information and previously determined properties (polyphenols, flavonoids, sugars, proteins) were tested for identifying polynomial correlations using partial least squares (PLS) technique. The good correlation coefficients, R<sup>2</sup> &gt; 0.97, and low mean errors in both training and testing stages proved that a FTIR-ATR spectrum provides key information for rapid screening of bee pollen in terms of the parameters significant for its nutritional labelling.
DOI: 10.6084/m9.figshare.11698602
title: LES of an internal ship air cavity

description: This dataset contains results from an LES of a simplified internal ship air cavity. It accompanies a publication that is soon to be submitted to a relevant journal. The contents are as follows.<br>Results from several simulations are included, and for each the following is provided<br>-- An OpenFOAM case, which should be possible to run. Restart files containing 3d fields, including the time-averaged data are present for each case.<br>-- 2d data obtained by averaging along the spanwise direction. It is available as a .vtm file and associated .vtp files. These can be opened in e.g. Paraview.<br>The following simulations are covered<br>-- The main simulation. Here additional data is present.* The probe-data for velocity and void fraction values, as hdf5 files (the probes_* files, outside the main_simulation.zip). * Time spectra computed based on the probe data, as txt files.<br>* Two-point correlations computed based on the probe data, as txt files. * The time-series of the force on the beach wall, as an hdf5 file. * The time-series of the volume of leaked air, as an hdf5 file.<br>-- Three simulations constituting a mesh resolution study.<br>-- Three cases constituting the study on the effect of the length of the cavity.<br>-- One cases constituting the study on the effects of surface tension.<br><br>Additionally the plot_scripts archive contains Pythons that allow to reporduce every figure found in the publication, excluding the 3d snapshots of the interface. The latter can be reproduced with Paraview. The scrip depend on several packages commonly used in scientific workflows, but also an additional package called turbulucid, which is available at<br>https://github.com/timofeymukha/turbulucid<br>Finally, an archive of exracted isosurfaces of alpha=0.5 is found in the file interface.zip. These are extracted from the simulation on the refinement level 2 mesh and allow to visualize the evolution of the interface. A video animation of this is also provide in acs.mp4<br><br>
DOI: 10.6084/m9.figshare.11698521
title: Metadata record for: A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

description: This dataset contains key characteristics about the data described in the Data Descriptor A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698521.v2
title: Metadata record for: A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

description: This dataset contains key characteristics about the data described in the Data Descriptor A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698602.v1
title: LES of an internal ship air cavity

description: This dataset contains results from an LES of a simplified internal ship air cavity. It accompanies a publication that is soon to be submitted to a relevant journal. The contents are as follows.<br>Results from several simulations are included, and for each the following is provided<br>-- An OpenFOAM case, which should be possible to run. Restart files containing 3d fields, including the time-averaged data are present for each case.<br>-- 2d data obtained by averaging along the spanwise direction. It is available as a .vtm file and associated .vtp files. These can be opened in e.g. Paraview.<br>The following simulations are covered<br>-- The main simulation. Here additional data is present. -- The probe-data for velocity and void fraction values, as hdf5 files. -- Time spectra computed based on the probe data, as txt files.<br> -- Two-point correlations computed based on the probe data, as txt files. -- The time-series of the force on the beach wall, as an hdf5 file. -- The time-series of the volume of leaked air, as an hdf5 file.<br>-- Three simulations constituting a mesh resolution study.<br>-- Three cases constituting the study on the effect of the length of the cavity.<br>-- One cases constituting the study on the effects of surface tension.<br><br>Additionally the plot_scripts archive contains Pythons that allow to reporduce every figure found in the publication, excluding the 3d snapshots of the interface. The latter can be reproduced with Paraview. The scrip depend on several packages commonly used in scientific workflows, but also an additional package called turbulucid, which is available at<br>https://github.com/timofeymukha/turbulucid<br><br>
DOI: 10.6084/m9.figshare.11698521.v1
title: Metadata record for: A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients

description: This dataset contains key characteristics about the data described in the Data Descriptor A 12-lead electrocardiogram database for arrhythmia research covering more than 10,000 patients. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11698602.v2
title: LES of an internal ship air cavity

description: This dataset contains results from an LES of a simplified internal ship air cavity. It accompanies a publication that is soon to be submitted to a relevant journal. The contents are as follows.<br>Results from several simulations are included, and for each the following is provided<br>-- An OpenFOAM case, which should be possible to run. Restart files containing 3d fields, including the time-averaged data are present for each case.<br>-- 2d data obtained by averaging along the spanwise direction. It is available as a .vtm file and associated .vtp files. These can be opened in e.g. Paraview.<br>The following simulations are covered<br>-- The main simulation. Here additional data is present.* The probe-data for velocity and void fraction values, as hdf5 files. * Time spectra computed based on the probe data, as txt files.<br>* Two-point correlations computed based on the probe data, as txt files. * The time-series of the force on the beach wall, as an hdf5 file. * The time-series of the volume of leaked air, as an hdf5 file.<br>-- Three simulations constituting a mesh resolution study.<br>-- Three cases constituting the study on the effect of the length of the cavity.<br>-- One cases constituting the study on the effects of surface tension.<br><br>Additionally the plot_scripts archive contains Pythons that allow to reporduce every figure found in the publication, excluding the 3d snapshots of the interface. The latter can be reproduced with Paraview. The scrip depend on several packages commonly used in scientific workflows, but also an additional package called turbulucid, which is available at<br>https://github.com/timofeymukha/turbulucid<br><br>
DOI: 10.6084/m9.figshare.11698602.v3
title: LES of an internal ship air cavity

description: This dataset contains results from an LES of a simplified internal ship air cavity. It accompanies a publication that is soon to be submitted to a relevant journal. The contents are as follows.<br>Results from several simulations are included, and for each the following is provided<br>-- An OpenFOAM case, which should be possible to run. Restart files containing 3d fields, including the time-averaged data are present for each case.<br>-- 2d data obtained by averaging along the spanwise direction. It is available as a .vtm file and associated .vtp files. These can be opened in e.g. Paraview.<br>The following simulations are covered<br>-- The main simulation. Here additional data is present.* The probe-data for velocity and void fraction values, as hdf5 files (the probes_* files, outside the main_simulation.zip). * Time spectra computed based on the probe data, as txt files.<br>* Two-point correlations computed based on the probe data, as txt files. * The time-series of the force on the beach wall, as an hdf5 file. * The time-series of the volume of leaked air, as an hdf5 file.<br>-- Three simulations constituting a mesh resolution study.<br>-- Three cases constituting the study on the effect of the length of the cavity.<br>-- One cases constituting the study on the effects of surface tension.<br><br>Additionally the plot_scripts archive contains Pythons that allow to reporduce every figure found in the publication, excluding the 3d snapshots of the interface. The latter can be reproduced with Paraview. The scrip depend on several packages commonly used in scientific workflows, but also an additional package called turbulucid, which is available at<br>https://github.com/timofeymukha/turbulucid<br><br>
DOI: 10.6084/m9.figshare.11698602.v4
title: LES of an internal ship air cavity

description: This dataset contains results from an LES of a simplified internal ship air cavity. It accompanies a publication that is soon to be submitted to a relevant journal. The contents are as follows.<br>Results from several simulations are included, and for each the following is provided<br>-- An OpenFOAM case, which should be possible to run. Restart files containing 3d fields, including the time-averaged data are present for each case.<br>-- 2d data obtained by averaging along the spanwise direction. It is available as a .vtm file and associated .vtp files. These can be opened in e.g. Paraview.<br>The following simulations are covered<br>-- The main simulation. Here additional data is present.* The probe-data for velocity and void fraction values, as hdf5 files (the probes_* files, outside the main_simulation.zip). * Time spectra computed based on the probe data, as txt files.<br>* Two-point correlations computed based on the probe data, as txt files. * The time-series of the force on the beach wall, as an hdf5 file. * The time-series of the volume of leaked air, as an hdf5 file.<br>-- Three simulations constituting a mesh resolution study.<br>-- Three cases constituting the study on the effect of the length of the cavity.<br>-- One cases constituting the study on the effects of surface tension.<br><br>Additionally the plot_scripts archive contains Pythons that allow to reporduce every figure found in the publication, excluding the 3d snapshots of the interface. The latter can be reproduced with Paraview. The scrip depend on several packages commonly used in scientific workflows, but also an additional package called turbulucid, which is available at<br>https://github.com/timofeymukha/turbulucid<br>Finally, an archive of exracted isosurfaces of alpha=0.5 is found in the file interface.zip. These are extracted from the simulation on the refinement level 2 mesh and allow to visualize the evolution of the interface. A video animation of this is also provide din video.mp4<br><br>
DOI: 10.6084/m9.figshare.11698254
title: Metadata record for: Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages

description: This dataset contains key characteristics about the data described in the Data Descriptor Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698254.v1
title: Metadata record for: Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages

description: This dataset contains key characteristics about the data described in the Data Descriptor Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11698254.v2
title: Metadata record for: Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages

description: This dataset contains key characteristics about the data described in the Data Descriptor Genome-wide gene expression profiling of the melon fly, Zeugodacus cucurbitae, during thirteen life stages. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11698248
title: CO<sub>2</sub> narcosis influences the memory of honey bees

description: Carbon dioxide is a relatively inert gas produced as a by-product of cellular respiration and is often used during various experimental manipulations of bees, as well as in beekeeping practices. However, a high concentration of carbon dioxide can affect the fitness of insects and even shorten their lives. Here, we tested the impact of exposure to carbon dioxide on the memory of foraging bees by performing a field experiment to test the spatial orientation of bees in terms of their ability to return to the nest. Additionally, we performed two laboratory experiments designed to test the short- and long-term memory of workers. Carbon dioxide had a clear negative impact on both the short-term memory and, uniquely, the long-term memory of worker bees. The laboratory results were confirmed by the field study, in which the bees had difficulty finding their way back to the nest after treatment with carbon dioxide. These results indicate that the use of carbon dioxide on foraging workers in research experiments should be limited, as it can indirectly affect the results of scientific research as well as colony conditions.
DOI: 10.6084/m9.figshare.11698245
title: Efficacy of Tumour Necrosis Factor-alpha therapy in paediatric Crohn’s disease patients with perianal lesions: a systematic review

description: <b>Introduction</b>: Anti-Tumor Necrosis Factor-alpha (TNF-α) therapy, primarily infliximab and adalimumab, are now increasingly used to induce and maintain disease remission in the pediatric perianal Crohn’s disease (CD) population, however, their optimal use has not yet been defined in the pediatric setting. <b>Areas covered</b>: In accordance with a published protocol (PROSPERO no. CRD42019118838), we systematically and critically evaluated all published evidence on the efficacy and safety of anti-TNF-α in children with perianal CD, in the PubMed, MEDLINE, Embase, Cochrane and clinicalTrials.gov databases until October, 18<sup>th</sup>, 2018. We included in our systematic review 29 articles yielding a total of 565 perianal CD patients aged between 9 months to 18 years. <b>Expert opinion</b>: According to low-quality evidence from small, uncontrolled and heterogeneous descriptive studies, and very few randomized controlled trial, nearly three-fifths children with perianal CD achieved remission with anti-TNF-α treatment and in approximately 40% remission was maintained after 12 months, with practically low discontinuation rate due to serious adverse events. More than half of the patients achieved complete fistula closure. There is still a need for more robust evidence adequately assessing the efficacy and safety of anti-TNF-α therapy in pediatric perianal CD, as well as in comparison with other therapies.
DOI: 10.6084/m9.figshare.11698248.v1
title: CO<sub>2</sub> narcosis influences the memory of honey bees

description: Carbon dioxide is a relatively inert gas produced as a by-product of cellular respiration and is often used during various experimental manipulations of bees, as well as in beekeeping practices. However, a high concentration of carbon dioxide can affect the fitness of insects and even shorten their lives. Here, we tested the impact of exposure to carbon dioxide on the memory of foraging bees by performing a field experiment to test the spatial orientation of bees in terms of their ability to return to the nest. Additionally, we performed two laboratory experiments designed to test the short- and long-term memory of workers. Carbon dioxide had a clear negative impact on both the short-term memory and, uniquely, the long-term memory of worker bees. The laboratory results were confirmed by the field study, in which the bees had difficulty finding their way back to the nest after treatment with carbon dioxide. These results indicate that the use of carbon dioxide on foraging workers in research experiments should be limited, as it can indirectly affect the results of scientific research as well as colony conditions.
DOI: 10.6084/m9.figshare.11698245.v1
title: Efficacy of Tumour Necrosis Factor-alpha therapy in paediatric Crohn’s disease patients with perianal lesions: a systematic review

description: <b>Introduction</b>: Anti-Tumor Necrosis Factor-alpha (TNF-α) therapy, primarily infliximab and adalimumab, are now increasingly used to induce and maintain disease remission in the pediatric perianal Crohn’s disease (CD) population, however, their optimal use has not yet been defined in the pediatric setting. <b>Areas covered</b>: In accordance with a published protocol (PROSPERO no. CRD42019118838), we systematically and critically evaluated all published evidence on the efficacy and safety of anti-TNF-α in children with perianal CD, in the PubMed, MEDLINE, Embase, Cochrane and clinicalTrials.gov databases until October, 18<sup>th</sup>, 2018. We included in our systematic review 29 articles yielding a total of 565 perianal CD patients aged between 9 months to 18 years. <b>Expert opinion</b>: According to low-quality evidence from small, uncontrolled and heterogeneous descriptive studies, and very few randomized controlled trial, nearly three-fifths children with perianal CD achieved remission with anti-TNF-α treatment and in approximately 40% remission was maintained after 12 months, with practically low discontinuation rate due to serious adverse events. More than half of the patients achieved complete fistula closure. There is still a need for more robust evidence adequately assessing the efficacy and safety of anti-TNF-α therapy in pediatric perianal CD, as well as in comparison with other therapies.
DOI: 10.6084/m9.figshare.11698224
title: Author response letter

description: Author response letter
DOI: 10.6084/m9.figshare.11698224.v1
title: Author response letter

description: Author response letter
DOI: 10.6084/m9.figshare.11695659
title: Metadata record for: A chromosome-scale reference genome for Giardia intestinalis WB

description: This dataset contains key characteristics about the data described in the Data Descriptor A chromosome-scale reference genome for Giardia intestinalis WB. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11695656
title: Sweden_beta_period_95sig.dat from Emergence of oscillations in a simple epidemic model with demographic data

description: A simple susceptible–infectious–removed epidemic model for smallpox, with birth and death rates based on historical data, produces oscillatory dynamics with remarkably accurate periodicity. Stochastic population data cause oscillations to be sustained rather than damped, and data analysis regarding the oscillations provides insights into the same set of population data. Notably, oscillations arise naturally from the model, instead of from a periodic forcing term or other exogenous mechanism that guarantees oscillation: the model has no such mechanism. These emergent natural oscillations display appropriate periodicity for smallpox, even when the model is applied to different locations and populations. The model and datasets, in turn, offer new observations about disease dynamics and solution trajectories. These results call for renewed attention to relatively simple models, in combination with datasets from real outbreaks.
DOI: 10.6084/m9.figshare.11695659.v2
title: Metadata record for: A chromosome-scale reference genome for Giardia intestinalis WB

description: This dataset contains key characteristics about the data described in the Data Descriptor A chromosome-scale reference genome for Giardia intestinalis WB. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11695659.v1
title: Metadata record for: A chromosome-scale reference genome for Giardia intestinalis WB

description: This dataset contains key characteristics about the data described in the Data Descriptor A chromosome-scale reference genome for Giardia intestinalis WB. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format