cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22309174
title: Replication data for: Assortative mixing of opinions about COVID-19 vaccination in personal networks

description: This data set corresponds to the study "Assortative mixing of opinions about COVID-19 vaccination in personal networks" (authored by Marian-Gabriel Hâncean, Jürgen Lerner, Matjaž Perc, José Luis Molina, and Marius Geantă). <br> This data set includes raw data and the corresponding code for data analysis replication. The code (R Markdown script) includes explanatory comments spatially arranged for human readability. In the code, we made the statistical models exactly reproducible by pseudo-random number generators which are explicitly seeded. <br> <br>
DOI: 10.6084/m9.figshare.22309174.v1
title: Replication data for: Assortative mixing of opinions about COVID-19 vaccination in personal networks

description: This data set corresponds to the study "Assortative mixing of opinions about COVID-19 vaccination in personal networks" (authored by Marian-Gabriel Hâncean, Jürgen Lerner, Matjaž Perc, José Luis Molina, and Marius Geantă). <br> This data set includes raw data and the corresponding code for data analysis replication. The code (R Markdown script) includes explanatory comments spatially arranged for human readability. In the code, we made the statistical models exactly reproducible by pseudo-random number generators which are explicitly seeded. <br> <br>
DOI: 10.5281/zenodo.7383687
title: Supplementary code and data for the paper `From stage to page: language independent bootstrap measures of distinctiveness in fictional speech`

description: The repository provides full data and processing / analysis pipeline for the paper <strong>'From stage to page: language independent bootstrap measures of distinctiveness in fictional speech</strong>'<br> <br> Rendered notebooks are also available through Github: 1) Preparation, energy distance and exploration (main) 2) Keyword curves & formal modeling - `00_dracor_get_data.R`. Script uses DraCor dedicated API to get texts spoken by characters - `01_distinctiveness_energy.ipynb` does the heavy lifting of data wrangling, cleaning and preprocessing, plus implements energy distance bootstrapping and does exploratory analysis - `02_logodds_curves.R` calculates keyword curves for characters<br> <br> - `03_analysis_and_models.R` explores keyword curves and does Bayesian models
DOI: 10.5281/zenodo.7383686
title: Supplementary code and data for the paper `From stage to page: language independent bootstrap measures of distinctiveness in fictional speech`

description: The repository provides full data and processing / analysis pipeline for the paper <strong>'From stage to page: language independent bootstrap measures of distinctiveness in fictional speech</strong>'<br> <br> Rendered notebooks are also available through Github: 1) Preparation, energy distance and exploration (main) 2) Keyword curves & formal modeling - `00_dracor_get_data.R`. Script uses DraCor dedicated API to get texts spoken by characters - `01_distinctiveness_energy.ipynb` does the heavy lifting of data wrangling, cleaning and preprocessing, plus implements energy distance bootstrapping and does exploratory analysis - `02_logodds_curves.R` calculates keyword curves for characters<br> <br> - `03_analysis_and_models.R` explores keyword curves and does Bayesian models
DOI: 10.25625/d7exmr/mhhfy2
title: fruit-flower.tab

description: :unav
DOI: 10.6084/m9.figshare.22310407
title: Table 4.1

description: Inclusion of retinal, neural and pancreatic microexons in cell lines representing different levels of SRRM3/4 activity. For each sheet, columns 1-4: name, event VastID, event genomic coordinate, exon length. L=levels
DOI: 10.6084/m9.figshare.22310407.v1
title: Table 4.1

description: Inclusion of retinal, neural and pancreatic microexons in cell lines representing different levels of SRRM3/4 activity. For each sheet, columns 1-4: name, event VastID, event genomic coordinate, exon length. L=levels
DOI: 10.6084/m9.figshare.22310404
title: R-Markdown file

description: R markdown file used to generate all statistical analyses referenced in the manuscript.
DOI: 10.6084/m9.figshare.22310410
title: Table 4.2

description: Inclusion of RetMICs among all the cell lines and experiments generated in Chapter 4. Columns 1-4: name, event VastID, event genomic coordinate, exon length. Columns 5-10: RetMICs PSI in cells expressing an Empty Vector (EV), EV+scramble sequence, SRRM3+ELAVL1 KD, SRRM3+scramble sequence, SRRM4+ELAVL1 KD and SRRM4+scramble. ΔPSI between the different OE and KD conditions is provided in columns 10-13. To reliably estimate inclusion levels, only events with sufficient read coverage are shown.
DOI: 10.6084/m9.figshare.22310410.v1
title: Table 4.2

description: Inclusion of RetMICs among all the cell lines and experiments generated in Chapter 4. Columns 1-4: name, event VastID, event genomic coordinate, exon length. Columns 5-10: RetMICs PSI in cells expressing an Empty Vector (EV), EV+scramble sequence, SRRM3+ELAVL1 KD, SRRM3+scramble sequence, SRRM4+ELAVL1 KD and SRRM4+scramble. ΔPSI between the different OE and KD conditions is provided in columns 10-13. To reliably estimate inclusion levels, only events with sufficient read coverage are shown.
DOI: 10.6084/m9.figshare.22310416
title: Statistical output

description: Html output from R-markdown file.
DOI: 10.17632/jz7d45p4x2.1
title: Biogeographic patterns of olenid trilobites

description: The biogeographic histories of two cosmopolitan groups of Olenida: Hypermecaspididae and <i>Parabolinella</i> (Olenidae) are studied herein. Different biogeographical models were compared, and the results were discussed in a paleogeographic and palaeoceanographic context. Dispersal pathways were proposed for both groups, identifying potential environmental factors that affected their distribution. Calibrated phylogenetic hypotheses for each taxon were used to compare different models of geographical evolution with the R package BioGeoBEARS. Time-stratified analyses were carried out, using different distance matrices, for three intervals (Furongian, Early Ordovician, and Middle Ordovician). Numbers and types of biogeographical events were estimated under the best-fitting models by using Biogeographic Stochastic Mapping (BSM). The folders include in this project contain the data used in the analysis, the code, and the outputs of the program.
The best-fitting model for both groups incorporated jump dispersal, indicating that this was an important speciation strategy. Vicariance was unimportant for these trilobites. The main strategy used for both groups would have been “island hopping”, taking advantage of the microterranes and volcanic island arc chains surrounding Laurentia, Baltica, Avalonia, and Gondwana. Superficial currents generated more homogeneous conditions, allowing dispersal by creeping in <i>Parabolinella</i>. By contrast, in Hypermecaspididae long-distance founder events would have been achieved only by stepping-stone, which is consistent with paleogeographic models that contemplate the development of ocean stratification. The different timings in the evolutionary histories of Parabolinella and Hypermecaspididae would have had an impact on the type and time of the event count inferred for each group. These differences can be explained by the tectonic and climatic changes during the intervals studied. Despite these differences, in both clades, founder and dispersal events were more abundant from the western margin of Gondwana, which constituted an important dispersal center during the Late Cambrian and Early Ordovician.
DOI: 10.17632/nyt7tpfr9c.1
title: Data for "User-independent Nonlinear Modeling using Adjusted Spline-interpolated Knots (UNMASK) and Indirect Hard Modeling for deriving compositions from spectra with background signals"

description: Experimental data for our publication "User-independent Nonlinear Modeling using Adjusted Spline-interpolated Knots (UNMASK) and Indirect Hard Modeling for deriving compositions from spectra with background signals"
- Raman spectra of mixtures of Aceton and ethanol with different artificially induced background signals
- Raman spectra of mixtures of chlorbutan, propaol and heptane with a glass background signal
DOI: 10.17632/d8vtmccsxs.1
title: Assessment of hair loss and skin changes during treatment in Asian breast cancer patients: A prospective cohort study 

description: Supplementary Figure 1. Flow diagram of the assessment of hair loss and skin changes in the adjuvant treatment group

Supplementary Figure 2. Flow diagram of the assessment of hair loss and skin changes in the neoadjuvant treatment group

Supplementary Figure 3. The alopecia scoring system

Supplementary Figure 4. Measurement of the volume of wrinkles in the crow's feet area using Antera 3D image capture system® (Miravex, Ireland) 

Supplementary Figure 5. Study enrolment flow chart 

Supplementary Table 1. β Coefficient of the Difference Between the 1st and 2nd visit measurements according to the adjuvant and neoadjuvant treatment regimens 

Supplementary Table 2. β coefficient of the 1st visit measurements according to the adjuvant and neoadjuvant treatment regimens
DOI: 10.17632/935t4d4w9z.1
title: Impact of the antidepressant Bupropion on the Dynamic Energy Budget of Daphnia magna

description: In this work, we applied the Dynamic Energy Budget theory  to investigate the possible physiological mode of action of the antidepressant Bupropion on the model organism Daphnia magna. Dynamic Energy Budget Individual-Based Models (DEB-IBM) were also used to extrapolate the results to the population level and to predict the combined effects of Bupropion exposure and food availability on the daphnids. 
Life-history traits (survival, growth, reproduction) of the individual animals were monitored until the end of the experiment (21 days). Survival and the number of live offspring produced per live female were recorded daily, while body length was measured every other day. 
Our results revealed an increasing negative effect of this antidepressant on the reproduction and survival of the animals with increasing concentration. At the population level, we found that even environmentally relevant doses of Bupropion could reduce the population density and its reproductive output. The impacts are predicted to be stronger under limited food conditions.
DOI: 10.17632/y9pjtt5ngc.4
title: Real driving emissions data: University of Pretoria

description: Real driving emissions (RDE) collected using a Portable Emissions Measurement System (PEMS) unit.

This data set includes the RDE records of different vehicles:
- Isuzu FTR850 AMT (Road-Rail Vehicle) medium heavy vehicle with a Euro 3 classification (file: public-rrv.csv).
- Ford Figo 1.5 (1498ccm, 91kW) Trend hatchback light passenger vehicle with a Euro 6 classification (132g/km) (file: public-figo.csv).
DOI: 10.17632/y9pjtt5ngc.5
title: Real driving emissions data: University of Pretoria

description: Real driving emissions (RDE) collected using a Portable Emissions Measurement System (PEMS) unit.

We recommend you read the version history of this data set to get the complete picture. This data set includes the RDE records of different vehicles:
- Isuzu FTR850 AMT (Road-Rail Vehicle) medium heavy vehicle with a Euro 3 classification (file: public-rrv.csv).
- Ford Figo 1.5 (1498ccm, 91kW) Trend hatchback light passenger vehicle with a Euro 6 classification (132g/km) (file: public-figo.csv).
- Toyota Etios 1.5 (1496ccm, 66kW) Sprint hatchback light passenger vehicle with a Euro 6 classification (138g/km) (file: public-etios.csv).

Changes in this version:
- The time and date values now correctly include the time zone.
- The Road-Rail-Vehicle has two additional ensembles of tests: one with a 1500kg load and the second with a 3000kg load. The added ensembles were recorded at a 5Hz frequency (5 observations per second). This increases the data set size significantly. Also, the user should take into account that all emissions are still reported per second.
- The ensemble of trips with the Gauteng Department of Roads and Transport's Toyota Etios, is added. This ensemble was also recorded and processed at 5Hz. There were two route deviations in this version of the file. The first was in route 3 at 28.307E 25.7178S. The second was in route 4 at 28.1998E 25.7735S. In this version of the data, the deviations were left in the data sets. In a subsequent version, they will be removed.
DOI: 10.17632/y9pjtt5ngc.1
title: Real driving emissions: Isuzu FTR850 AMT

description: Real driving emissions (RDE) of an Isuzu FTR850 AMT (Road-Rail Vehicle) heavy vehicle collected using a Portable Emissions Measurement System (PEMS) unit.
DOI: 10.17632/y9pjtt5ngc.2
title: Real driving emissions: Isuzu FTR850 AMT

description: Real driving emissions (RDE) of an Isuzu FTR850 AMT (Road-Rail Vehicle) heavy vehicle collected using a Portable Emissions Measurement System (PEMS) unit. This version removes the erroneous duplication of records in v1.
DOI: 10.17632/y9pjtt5ngc.3
title: Real driving emissions data: Isuzu FTR850 AMT

description: Real driving emissions (RDE) of an Isuzu FTR850 AMT (Road-Rail Vehicle) heavy vehicle collected using a Portable Emissions Measurement System (PEMS) unit. This version is exactly the same as v2. The Data in Brief data managers, however, requested that the file be provided in an (uncompressed) open format. Also, the name of this set now includes the word "data".
DOI: 10.17632/8gy9mbb6hk.1
title: Interface Design of Information Architecture for an Interactive Response System App The Experience of DifferentLearning

description: Interface Design of Information Architecture for an Interactive Response System App The Experience of DifferentLearning
DOI: 10.6084/m9.figshare.22310419
title: Table 4.3

description: The table contains primer name, sequence and application in the study.
DOI: 10.6084/m9.figshare.22307494
title: savedrecs_wms_20221223.txt

description: Results from a Web of Science search on 2022-12-23 with the formula “TOPIC: (“workflow management software”) OR TOPIC: (“data pipeline”)”. This search returned 254 results. The 254 complete records were then downloaded and 50 abstracts were subsampled and manually checked to determine if the study involved data pipelines or workflow management software. Of the 50 subsampled studies, 86% were within the scope of our analysis.
DOI: 10.6084/m9.figshare.22307494.v1
title: savedrecs_wms_20221223.txt

description: Results from a Web of Science search on 2022-12-23 with the formula “TOPIC: (“workflow management software”) OR TOPIC: (“data pipeline”)”. This search returned 254 results. The 254 complete records were then downloaded and 50 abstracts were subsampled and manually checked to determine if the study involved data pipelines or workflow management software. Of the 50 subsampled studies, 86% were within the scope of our analysis.
DOI: 10.15468/jhkbbt
title: Meiofauna North Adriatic-Gulf of Trieste C1-LTER time-series from 2010 onwards

description: Top 10 cm of sediment is collected by means of 3 cut-off plastic syringes.
DOI: 10.5066/p93gazx5
title: Data from two tracer investigations in the Snake Creek drainage, Great Basin National Park, White Pine County, Nevada

description: This U.S. Geological Survey (USGS) data release consists of data from two tracer investigations in the Snake Creek drainage of Great Basin National Park, White Pine County, Nevada. The first investigation, occurring from April to September 2019, involved injecting a fluorescein dye tracer below a diversion point in Snake Creek and monitoring 13 sites in the Snake Creek and neighboring Big Wash drainages for presence of the dye. The results of the first investigation were used to select a targeted monitoring location for a second, quantitative investigation. The second investigation, occurring from September 2020 to March 2021, involved injecting two tracers, sodium bromide and fluorescein dye, below the same diversion point and monitoring the quantity of tracer in discharge measured at Spring Creek Spring (USGS site 385433114063901). The data release includes three tables in Tab Separated Values (TSV) format: 1) Fluorescein_2019Reconnaissance.tsv - Dye recovery classifications at 13 sites during a reconnaissance dye tracer investigation in the Snake Creek and Big Wash drainages of Great Basin National Park, White Pine County, Nevada, April to September 2019. 2) Bromide_SpringCreekSpring.tsv - Bromide recovery concentrations observed in Spring Creek Spring (USGS site 385433114063901) discharge during a quantitative dual-tracer investigation in the Snake Creek drainage of Great Basin National Park, White Pine County, Nevada, October 2020 to March 2021. 3) Fluorescein_SpringCreekSpring.tsv - Fluorescein recovery concentrations observed in Spring Creek Spring (USGS site 385433114063901) discharge during a quantitative dual-tracer investigation in the Snake Creek drainage of Great Basin National Park, White Pine County, Nevada, September 2020 to February 2021.
DOI: 10.6084/m9.figshare.22310422
title: R-markdown file

description: R-markdown file containing all statistical analyses used in the manuscript.
DOI: 10.6084/m9.figshare.22310422.v1
title: R-markdown file

description: R-markdown file containing all statistical analyses used in the manuscript.
DOI: 10.6084/m9.figshare.21641531
title: Table 4.2.xlsx

description: <strong>Table 4.1: Regulation of retina-enriched exons in SRRM3 OE_ELAVL1 KD and SRRM4 OE_ELAVL1 KD cells.</strong> Inclusion of RetMICs among all the cell lines and experiments included in Chapter 4. Columns 1-4: name, event VastID, event genomic coordinate, exon length. Columns 5-10: RetMICs PSI in cells expressing an Empty Vector (EV), EV+scramble sequence, SRRM3+ELAVL1 KD, SRRM3+scramble sequence, SRRM4+ELAVL1 KD and SRRM4+scramble. ΔPSI between the different OE and KD conditions is provided in columns 10-13. Only events with sufficient read coverage are shown, to reliably estimate inclusion levels.
DOI: 10.6084/m9.figshare.21641531.v2
title: Table 4.2.xlsx

description: <strong>Table 4.1: Regulation of retina-enriched exons in SRRM3 OE_ELAVL1 KD and SRRM4 OE_ELAVL1 KD cells.</strong> Inclusion of RetMICs among all the cell lines and experiments included in Chapter 4. Columns 1-4: name, event VastID, event genomic coordinate, exon length. Columns 5-10: RetMICs PSI in cells expressing an Empty Vector (EV), EV+scramble sequence, SRRM3+ELAVL1 KD, SRRM3+scramble sequence, SRRM4+ELAVL1 KD and SRRM4+scramble. ΔPSI between the different OE and KD conditions is provided in columns 10-13. Only events with sufficient read coverage are shown, to reliably estimate inclusion levels.
DOI: 10.6084/m9.figshare.21641627
title: Table 4.3

description: <strong>Table 4.2: Primer sequences used in Chapter 4.</strong> It contains primer name, sequence and application in the study.
DOI: 10.6084/m9.figshare.21641627.v2
title: Table 4.3

description: <strong>Table 4.2: Primer sequences used in Chapter 4.</strong> It contains primer name, sequence and application in the study.
DOI: 10.6084/m9.figshare.22310428
title: Table 4.1

description: Inclusion of retinal, neural and pancreatic microexons in cell lines representing different levels of SRRM3/4 activity. For each sheet, columns 1-4: name, event VastID, event genomic coordinate, exon length. L=levels
DOI: 10.6084/m9.figshare.22310428.v1
title: Table 4.1

description: Inclusion of retinal, neural and pancreatic microexons in cell lines representing different levels of SRRM3/4 activity. For each sheet, columns 1-4: name, event VastID, event genomic coordinate, exon length. L=levels
DOI: 10.6084/m9.figshare.21641531.v1
title: Table 4.1.xlsx

description: <strong>Table 4.1: Regulation of retina-enriched exons in SRRM3 OE_ELAVL1 KD and SRRM4 OE_ELAVL1 KD cells.</strong> Inclusion of RetMICs among all the cell lines and experiments included in Chapter 4. Columns 1-4: name, event VastID, event genomic coordinate, exon length. Columns 5-10: RetMICs PSI in cells expressing an Empty Vector (EV), EV+scramble sequence, SRRM3+ELAVL1 KD, SRRM3+scramble sequence, SRRM4+ELAVL1 KD and SRRM4+scramble. ΔPSI between the different OE and KD conditions is provided in columns 10-13. Only events with sufficient read coverage are shown, to reliably estimate inclusion levels.
DOI: 10.6084/m9.figshare.21641627.v1
title: Table 4.2

description: <strong>Table 4.2: Primer sequences used in Chapter 4.</strong> It contains primer name, sequence and application in the study.
DOI: 10.5281/zenodo.6942242
title: PCA-based Hierarchical Clustering Approach for Motion Vector Estimation in H.265/HEVC Video Error Concealment

description: The dataset generated during the study is presented here, such as statistics and configurations for encoding and decoding. Additionally, each experiment's bitstream is included.
DOI: 10.5281/zenodo.7756564
title: PCA-based Hierarchical Clustering Approach for Motion Vector Estimation in H.265/HEVC Video Error Concealment

description: The dataset generated during the study is presented here, such as statistics and configurations for encoding and decoding. Additionally, each experiment's bitstream is included.
DOI: 10.6084/m9.figshare.22310437
title: Html output

description: HTML output of R-markdown file.
DOI: 10.6084/m9.figshare.22310437.v1
title: Html output

description: HTML output of R-markdown file.
DOI: 10.5519/qd.fvuib58q
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.19765849.v5
title: Data and code for aging C57BL/6J proteomics manuscript

description: Data and code used for the aging C57BL/6J proteomics manuscript. Data includes quantitative protein profiling from 10 tissues (kidney, liver, fat, spleen, lung, heart, skeletal muscle, striatum, cerebellum, and hippocampus) from 20 C57BL/6J mice, representing balanced groups by sex and age (8 and 18 months-old). Code for processing data, running analysis, and producing figures are included. Code and data to locally run an interactive data viewer (Shiny application) is also included.
DOI: 10.6084/m9.figshare.19765849.v4
title: Data and code for aging C57BL/6J proteomics manuscript

description: Data and code used for the aging C57BL/6J proteomics manuscript. Data includes quantitative protein profiling from 10 tissues (kidney, liver, fat, spleen, lung, heart, skeletal muscle, striatum, cerebellum, and hippocampus) from 20 C57BL/6J mice, representing balanced groups by sex and age (18 and 8 months-old). Code for processing data, running analysis, and producing figures are included. Code and data to locally run an interactive data viewer (RShiny application) is also included.
DOI: 10.6084/m9.figshare.19483418
title: Changes in nutrient concentration resulting from floods and their impact on the estuary-sea continuum

description: Files in this path are the survey and model data in the study titled Changes in nutrient concentration resulting from floods and their impact on the estuary-sea continuum. <br> File 2017Discharge_SSC_DHG.xls is the discharge and suspended sediment concentration data at the Datong Hydrological Station. File sample information (Appendix).xlsx include all information and data in the three cruise survey. File tide_wind_hourly.NC is a NetCDF file output by model. The data from this file are in hourly temporal resolution, including wind field, tidal elevation, temperature, salinity, and SSC in the continuum. File modeldata.NC is a NetCDF file output by flood event simulating. The data include temperature, salinity, nitrate, phosphate, and Chl-a. File modeldata_clm.NC is a NetCDF file output by an ideal numerical experiment for comparing the difference between climatological phosphate concentration and flooding scenario.