cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.x3ffbg7g9
title: A king and vassals’ tale: molecular signatures of clonal integration in Posidonia oceanica under chronic light shortage

description: 1. Under unfavourable conditions, clonal plants benefit from physiological
 integration among ramets, sharing resources and information. Clonal
 integration can buffer against environmental changes and let the plant
 clone work as a “macro” organism. Molecular signals that regulate this
 phenomenon are completely unknown in marine plants. 2. Here, we present a
 first comprehensive study providing insights into the metabolic role of
 different types of ramets (i.e., apical vs vertical) in the foundation
 species Posidonia oceanica. Plants were exposed to 80% diminishing
 irradiance level (LL) in a controlled-mesocosm system. Subsequent
 multi-scale variations in whole transcriptome expression, global DNA
 methylation level, photo-physiology, morphology and fitness-related
 traits, were explored at different exposure times. We tested the
 hypothesis that vertical shoots (the “vassals”) can provide vital
 resources to apical shoots (the “kings”) under energy shortage, thus
 safeguarding the whole clone survival. 3. Whole transcriptome analysis of
 leaves and shoot-apical meristems (SAMs) emphasised signatures of
 molecular integration among ramets, which strongly correlated with higher
 organisation level responses. In both shoots types, the exposure to LL
 resulted in a growth slowdown throughout the experiment, which started
 from immediate signals in SAMs. In apical shoots, this was linked to an
 acclimative response, where they were suffering a mild stress condition,
 while in vertical ones it resulted in a more severe stress response. Yet,
 they suffered from sugar starvation and showed a clear cellular stress
 response in terms of protein refolding and DNA repair mechanisms. Several
 epigenetic mechanisms modulated the observed gene-expression patterns and
 the cross-talk between DNA methylation and the cellular energetic status
 appeared to regulate shoot metabolism under LL. 4. Synthesis. Our results
 demonstrate a high level of specialisation of integrated ramets within
 seagrass clones and a “division of labour” under adverse conditions.
 Vertical shoots appear to do “most of the job” especially in terms of
 resource providing, whereas activated functions in apical shoots were
 restricted to few important processes, according to an “energy-saving”
 strategy. The response of vertical shoots could be seen as a “sacrificing
 response” allowing the survival of “the king” that is key for ensuring
 propagation and population maintenance, and for the colonisation of new
 environments.
DOI: 10.15468/dl.xhhh7u
title: Occurrence Download

description: A dataset containing 994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((159.00094 -48.95058,200.03306 -48.95058,200.03306 -32.54476,159.00094 -32.54476,159.00094 -48.95058))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhaphidorrhynchium amoenum"
 ]
}

 The dataset includes 994 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002446-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.sf7m0cg3s
title: Learning strategies and long-term memory in Asian short-clawed otters (Aonyx cinereus) data

description: Data submitted here, are those used in the writing of our manuscript
 entitled "Learning strategies and long-term memory in Asian
 short-clawed otters (Aonyx cinereus)" which has been submitted to
 Royal Society Open Science for publication. Abstract for that manuscript
 is below Social learning, namely learning from information acquired from
 others or their products, is widespread throughout the animal kingdom.
 There is growing evidence that animals selectively employ ‘social learning
 strategies’, which for example, determine when they should copy others
 instead of learning asocially, and whom they should copy. Furthermore,
 once animals have acquired new information, it is beneficial for them to
 commit it to long-term memory, especially when it concerns the discovery
 of profitable resources. Research into social learning strategies and
 long-term memory has covered a wide range of taxa. However, otters
 (subfamily Lutrinae), popular in zoos due to their sociability and
 playfulness, remained neglected until a recent study provided evidence of
 social learning in captive smooth-coated otters (Lutrogale perspicillata),
 but not in Asian short-clawed otters (Aonyx cinereus). We investigated
 Asian short-clawed otters’ learning strategies and long-term memory
 performance in a foraging context. We presented novel extractive foraging
 tasks twice to captive family groups and used network-based diffusion
 analysis to provide evidence of social learning and long-term memory in
 this species. A major cause of wild Asian short-clawed otter declines is
 prey scarcity. Furthering our understanding of how they learn about and
 remember novel food sources could inform key conservation strategies.
description: Please refer to associated manuscript for detailed data
 collection and analysis proceedures.
DOI: 10.15468/dl.7mf44j
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Andinobates virolinensis"
 ]
}

 The dataset includes 32 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002447-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x69p8czg4
title: Negative mood affects the expression of negative but not positive emotions in mice

description: Whether, and to what extent animals experience emotions is crucial for
 understanding their decisions and behaviour, and underpins a range of
 scientific fields, including animal behaviour, neuroscience, evolutionary
 biology and animal welfare science. However, research has predominantly
 focussed on alleviating negative emotions in animals, with the expression
 of positive emotions left largely unexplored. Therefore, little is known
 about positive emotions in animals and how their expression is mediated.
 We used tail handling to induce negative mood in laboratory mice and found
 that whilst being more anxious and depressed increased their expression of
 a discrete negative emotion (‘disappointment’) meaning that they were less
 resilient to negative events, their capacity to express a discrete
 positive emotion (‘elation’) was unaffected relative to control mice.
 Therefore, we show not only that mice have discrete positive emotions, but
 that they do so regardless of their current mood state. Our findings are
 the first to suggest that the expression of discrete positive and negative
 emotions in animals are not equally affected by long-term mood state. Our
 results also demonstrate that repeated negative events can have a
 cumulative effect to reduce resilience in laboratory animals, which has
 significant implications for animal welfare.
DOI: 10.5061/dryad.j3tx95xb5
title: Chernobyl-level radiation exposure damages bumblebee reproduction: a laboratory experiment

description: The consequences for wildlife of living in radiologically contaminated
 environments are uncertain. Previous laboratory studies suggest insects
 are relatively radiation-resistant; however, some field studies from the
 Chernobyl Exclusion Zone report severe adverse effects at substantially
 lower radiation dose rates than expected. Here we present the first
 laboratory investigation to study how environmentally-relevant radiation
 exposure affects bumblebee life-history, assessing the shape of the
 relationship between radiation exposure and fitness-loss. Dose rates
 comparable to the Chernobyl Exclusion Zone (50-400 µGy h-1) impaired
 bumblebee reproduction and delayed colony growth but did not affect colony
 weight or longevity. Our best-fitting model for the effect of radiation
 dose rate on colony queen production had a strongly non-linear concave
 relationship: exposure to only 100 µGy h-1 impaired reproduction by
 30-45%, while further dose rate increases caused more modest additional
 reproductive impairment. Our data indicate that the practice of estimating
 effects of environmentally-relevant low dose rate exposure by
 extrapolating from high dose rates may have considerably underestimated
 the effects of radiation. If our data can be generalised, they suggest
 insects suffer significant negative consequences at dose rates previously
 thought safe; we therefore advocate relevant revisions to the
 international framework for radiological protection of the environment.
description: This is the raw data
DOI: 10.5061/dryad.pzgmsbchr
title: SRP54 locus genotypes of white-tailed deer from Jamieson et al.

description: Estimating heritability (h2) is required to predict the response to
 selection and is useful in species that are managed or farmed using trait
 information. Estimating h2 in free-ranging populations is challenging due
 to the need for pedigrees; genomic-relatedness matrices (GRMs) circumvent
 this need and can be implemented in nearly any system where phenotypic and
 genome-wide single nucleotide polymorphism (SNP) data are available. We
 estimated the heritability of five body and three antler traits in a
 free-ranging population of white-tailed deer (Odocoileus virginianus) on
 Anticosti Island, Quebec, Canada. We generated classic and robust GRMs
 from &gt;10,000 SNPs: hind foot length, dressed body mass and peroneus
 muscle mass had high h2 values of 0.62, 0.44 and 0.55, respectively.
 Heritability in male-only antler features ranged from 0.07 to 0.33 and had
 high standard errors. We explored the influence of filtering by minor
 allele frequency and data completion on h2: GRMs derived from fewer SNPs
 had reduced h2 estimates and the relatedness coefficients significantly
 deviated from those generated with more SNPs. As a corollary, we discussed
 limitations to the application of GRMs in the wild, notably how skewed
 GRMs, specifically many unrelated individuals, can increase variance
 around h2 estimates. This is the first study to estimate h2 on a
 free-ranging population of white-tailed deer and should be informative for
 breeding designs and management as these traits should respond to
 selection.
description: We custom designed a rhAmp SNP assay and genotyped individuals
 via qPCR with a QuantStudio 3 Real-Time PCR System (Thermo Fisher
 Scientific, Waltham, MA, USA). The thermocycling condition was 60 °C for
 30 seconds followed by 95 °C for 10 minutes, then 40 cycles of 95 °C for
 10 seconds, 60 °C for 30 seconds, and 68 °C for 20 seconds, followed by a
 final 30 seconds at 60 °C. The qPCR had a 5 µL reaction volume in each 0.1
 mL well of a sealed 96-well optical plate. We score the SRP54 locus in an
 additive framework (0, 1, or 2 alleles)
description: Included are four colums, in order: population, ID, age, and
 allele calls
DOI: 10.5061/dryad.0rxwdbrx6
title: Data from: Risky roots and careful herbivores: Sustained herbivory by a root-feeding herbivore attenuates indirect plant defences

description: Abstract Aboveground plant tissues produce characteristic blends of
 volatile compounds in response to insect herbivory. These
 herbivore-induced plant volatiles (HIPVs) function in plant defence and
 mediate foraging decisions by herbivores and their natural enemies. The
 ecological roles of HIPVs as foraging cues for different trophic levels
 highlight an important conflict for herbivores that need to locate
 suitable host plants while avoiding competition and predation. 
   Plant roots also emit HIPVs following herbivory, but our
 understanding of root-produced volatiles and their ecological functions in
 soil environments remains limited. Moreover, recent studies have
 documented the effects of temporal dynamics of plant volatile production
 on ecological interactions, but little is known about how root HIPVs
 change throughout herbivory or the resulting ecological implications from
 such changes.     In this study, we examined
 the roles of HIPVs from roots of cucumber plants (Cucumis sativus) as
 foraging cues for a specialist herbivore, striped cucumber beetle
 (Acalymma vittatum) and its natural enemies, entomopathogenic nematodes
 (EPNs). We predicted HIPVs from A. vittatum-damaged roots would attract
 EPNs, while repelling conspecific larvae that avoid competition, induced
 plant defences, and increased risk of predation by EPNs. To capture the
 temporal dynamics of root HIPVs, we determined how HIPV-mediated
 interactions change over time with sustained
 herbivory.     Initially (after 24 h), A.
 vittatum herbivory on C. sativus, or mechanical wounding, induced greater
 production of root volatiles. These root HIPVs recruited EPNs and repelled
 foraging A. vittatum larvae, although larval performance was not affected
 by prior damage. Sustained (7-day) herbivory by larvae reduced HIPVs to
 levels indistinguishable from undamaged control roots, while mechanically
 damaged roots continued to produce higher levels of volatiles. Attenuation
 of HIPVs impaired indirect defence responses of C. sativus by reducing
 recruitment of EPNs and deterrence of A. vittatum
 larvae.     These results suggest that root
 HIPVs function as honest signals that indicate the presence of herbivores,
 induction of indirect plant defences, and increased risk of predation by
 natural enemies. However, some herbivores may overcome this line
 of plant defence by attenuating production of HIPVs and thus altering the
 outcomes of subsequent interactions among plants, herbivores, and natural
 enemies.
DOI: 10.5281/zenodo.18395641
title: Dataset de benchmark comparativo de honeypots tradicionales y mejorados con aprendizaje automático (2026)

description: Dataset del primer benchmark comparativo concurrente de 6 honeypots open-source (3 tradicionales: T-Pot 24.04, Cowrie 2024.2, Dionaea 2024.1; 3 ML-enhanced: Artifice, HoneyGAN, baseline propio Cowrie + Isolation Forest). Desplegados simultáneamente 60 días (enero-marzo 2026) en Hetzner Cloud (Alemania) con tráfico real replicado (tcpreplay). Incluye logs JSON/CSV anonimizados (~2.58M eventos iniciales, acumulado proyectado >10M), métricas diarias (CPU/RAM/logs/interacciones/fingerprinting), capturas pcap (487 GB proyectados), scripts Docker/Ansible y notebooks Jupyter para análisis estadístico.  

Fase principal en curso (enero 2026). Datos piloto Día 18 (~1.5-2M eventos). Muestra pública disponible en ZIP (logs anonimizados Día 18). Datos completos restringidos hasta finalización del experimento (31/03/2026).  

Repositorio de código y despliegue: https://github.com/namus15/comparative-honeypot-benchmark-2026

Dataset de honeypots comparativos 2026Autor: Dr. Giovanni Carlos Lorusso MontielDOI: https://doi.org/10.5281/zenodo.17688915

Orcid 0000-0002-3122-8142

Experimento: 60 días completos (enero–marzo 2026)5 honeypots concurrentes + monitor centralLicencia: CC-BY-4.0
DOI: 10.5061/dryad.76hdr7stn
title: BioMar-ACG: A successful partnership to inventory and promulgate marine biodiversity

description: Initiated in 2015, the marine inventory of Área de Conservación Guanacaste
 (BioMar-ACG) is rapidly advancing knowledge of biodiversity. Key aspects
 include: synergizing with parataxonomists, barcoding specimens and making
 information available. After 85 years, 594 species were reported. Now,
 after four years, BioMar-ACG documented 1,123 species, for a total of
 1,479.
description: Individuals shown in photographs in this dataset have signed
 releases authorizing the use of their likenesses.
DOI: 10.7280/d16387
title: California building footprints

description: This data set is a conversion of Califonia building footprint file from
 GeoJSON format to shapefile format.  The
 California building footprint file which contains 10,988,525
 computer generated building footprints in California state is
 extracting from US building footprint dataset by
 Microsoft (2018).
DOI: 10.5061/dryad.nvx0k6dq3
title: Haemosporidian parasites of Neotropical birds: causes and consequences of infection

description: Haemosporidian parasites of the genera Plasmodium, Haemoproteus, and
 Leucocytozoon are among the best studied parasites of Neotropical birds.
 Here, we describe variation in haemosporidian prevalence (i.e., the
 proportion of infected birds in a sampled population) in Neotropical
 birds. We review correlates of haemosporidian prevalence (including
 several avian life-history traits, climate, and season) and the population
 and evolutionary consequences of infection for Neotropical birds. We find
 that prevalence varies among avian taxonomic families, genera, and even
 among species within the same genus, suggesting that prevalence reflects
 multiple factors, some of which (e.g., avian incubation period) are
 associated with avian family-level variation in prevalence while others
 (e.g., avian abundance) are associated with variation in prevalence among
 closely related host species. We find few correlates of prevalence that
 have been consistently demonstrated across studies. Prevalence in
 populations of many Neotropical birds has been estimated by microscopic
 examination of blood smears, which affords limited opportunity for
 comparison with data generated by molecular methods. However, at one site
 in the Brazilian Cerrado for which we have data, prevalence determined by
 microscopy does not correlate with prevalence determined by molecular
 methods for Plasmodium, but the two data types are positively correlated
 for Haemoproteus. Haemosporidians have been hypothesized to play a role in
 avian sexual selection, and we find that the prevalence of Haemoproteus to
 be lower in polygynous species than in socially monogamous species in the
 Neotropics, confirming a pattern shown previously among Nearctic birds.
description: These are previously published data.
description: The "metadata" tab gives definitions of each column in
 the "data" tab.
DOI: 10.25349/d9ck5q
title: Data from: Postwar wildlife recovery in an African savanna: Evaluating patterns and drivers of species occupancy and richness

description: As local and global disturbances reshape African savannas, an
 understanding of how animal communities recover and respond to landscape
 features can inform conservation and restoration. Here, we explored the
 spatial ecology of a wildlife community in Gorongosa National Park,
 Mozambique, where conservation efforts have fostered the recovery of large
 mammal populations after their near‐extirpation during Mozambique’s civil
 war. We deployed a grid of 60 camera traps and used a hierarchical,
 multi‐species occupancy modeling approach to examine patterns of occupancy
 and its environmental and anthropogenic correlates for different
 functional groups and species. Our survey provides strong evidence that
 wildlife in Gorongosa is recovering. Throughout the study area, modeled
 species richness was comparable to richness in less‐disturbed savanna
 systems in Tanzania and Botswana, and exceeded estimates of richness from
 a mixed‐use landscape outside the park and from postwar (1997–2002) aerial
 surveys. However, the mammal community in Gorongosa differs from prewar
 conditions and from those of more intact systems, with few large
 carnivores, low occupancy probabilities for large ungulate species that
 were dominant prior to the war, and high occupancy for other ungulates
 that are now ubiquitous. Associations with tree cover varied among species
 and guilds. Contrary to our expectation, there was no effect of lake
 proximity on occupancy, given that previously dominant floodplain ungulate
 species now occupy more wooded areas. Mammals were more likely to occupy
 areas that burned frequently, as post‐fire vegetation regrowth provides
 high‐quality forage, highlighting the importance of Gorongosa’s fire
 regime. Occupancy was lower in areas with more illegal hunting, and higher
 closer to roads, potentially because roads were established in areas of
 high wildlife density and facilitate animal movement. Continued
 multi‐species monitoring in Gorongosa can shed light on the different
 recovery trajectories of ungulate species and the consequences of ongoing
 large carnivore restoration, guiding conservation interventions.
description: R script, JAGS model, and data used to estimate occupancy of
 mammals using camera trap records from Gorongosa National Park,
 Mozambique
DOI: 10.5061/dryad.r7sqv9s8w
title: Evaluating the educational effectiveness of a structured, simulator-assisted, peer-led training on cardiovascular physical examination in third-year medical students: A randomized, controlled trial

description: Background: Previous research suggests that
 cardiac examination skills in undergraduate medical students frequently
 need improvement. There are different ways to
 enhance physical examination (PE) skills such as simulator-based
 training or peer-assisted learning (PAL).  Aim: The aim
 of this study was to evaluate the effectiveness of a structured,
 simulator-assisted, peer-led training on cardiovascular PE.
 Methods: Participants were third-year medical students at Leipzig
 University Faculty of Medicine. Students were randomly assigned to an
 intervention group (IG) and a control group (CG). In addition to standard
 curricular training, IG received a peer-led, simulator-based training in
 cardiac PE. Participant performance in cardiac PE was assessed using a
 standardized checklist with a maximum of 25 points. Primary outcome was
 assessed via checklist point distribution. Results: 89 students
 were randomised to either CG (n = 43) or IG (n = 46)
 with 70 completing the study. Overall, IG students performed
 significantly better than CG students did (max. points: 25, IG M ± SD in
 IG was 17 ± 3, in CG 12 ± 4, p &lt; .0001). Simple mistakes such as
 not using the stethoscope correctly were more frequent in CG students.
 Prior experience did not lead to a significant difference in
 performance.  Conclusions: Structured, peer-led and
 simulator-assisted teaching sessions improve cardiac PE skills in this
 setting compared to control students that did not receive this training.
DOI: 10.25338/b8790r
title: Transgenerational plasticity and the capacity to adapt to low salinity in the eastern oyster, Crassostrea virginica

description: Salinity conditions in oyster breeding grounds in the Gulf of Mexico are
 expected to drastically change due to increased precipitation from climate
 change and anthropogenic changes to local hydrology. We determined the
 capacity of the eastern oyster, Crassostrea virginica, to adapt via
 standing genetic variation or acclimate through transgenerational
 plasticity. We outplanted oysters to either a low or medium salinity site
 in Louisiana for two years. We then crossed adult parents using a North
 Carolina II breeding design and measured body size and survival of larvae
 5 dpf raised under low or ambient salinity. We found that
 transgenerational plasticity is unlikely to significantly contribute to
 low salinity tolerance since we did not observe increased growth or
 survival in offspring reared in low salinity when their parents were also
 acclimated at a low salinity site. However, we detected genetic variation
 for body size, with an estimated heritability of 0.68 ± 0.25 (95% CI).
 This suggests there is ample genetic variation for this trait to evolve,
 and that evolutionary adaptation is a possible mechanism through which
 oysters will persist with future declines in salinity. The results of this
 experiment provide valuable insights into successfully breeding low
 salinity tolerance in this commercially important species.