cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.99660
title: Research data supporting "KV7 but not dual SK/IK channel openers inhibit the activation of colonic afferents by noxious stimuli"

description: This data pertains to a PhD project investigating the role of calcium-activated potassium channels and a subfamily of voltage-gated potassium channels (Kv7) in the regulation of colonic afferent activity. Fig 1 shows the expression of transcripts encoding channel subunits (derived from publicly-available RNAseq dataset). Figs 2-5 shows electrophysiological data from experiments in which the activity of the lumbar splanchnic nerve was recorded while chemical or mechanical stimuli were applied to the colon. Fig 6 shows analysis of experiments in which the intraluminal pressure of the colon was recorded. All data sheets are labelled to show the corresponding figure panel.
DOI: 10.6084/m9.figshare.c.3624068_d8.v1
title: Additional file 5: Table S2. of Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

description: LincRNA conservation analysis. (XLSX 32Â kb)
DOI: 10.6084/m9.figshare.c.3624092_d1.v1
title: Additional file 1: of Does erosion progress differently on teeth already presenting clinical signs of erosive tooth wear than on sound teeth? An in vitro pilot trial

description: Data. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3624101_d1.v1
title: Additional file 1: of NBS-LRR-mediated resistance triggered by aphids: viruses do not adapt; aphids adapt via different mechanisms

description: Data set of resistance tests for melon accessions and lines. (XLSX 1385 kb)
DOI: 10.6084/m9.figshare.c.3624104_d1.v1
title: Additional file 4: of Activins and their related proteins in colon carcinogenesis: insights from early and advanced azoxymethane rat models of colon cancer

description: Histopathology, immunohistochemistry, ELISA and gene expression raw data. Raw data generated from gross and microscopic studies of tumours, digital image analysis for measuring the surface areas of neoplastic lesions, immunohistochemistry scores of all studied molecules, ELISA data generated from serum and colonic tissues; and data form quantitative expression of all targeted genes. (XLSX 674 kb)
DOI: 10.17863/cam.50420
title: Research data underlying: Direct vs Delayed Triplet Energy Transfer from Organic Semiconductors to Quantum Dots and Implications for Luminescent Harvesting of Triplet Excitons

description: Files with data underlying the figures in the manuscript and SI are attached. Data for Absorption in file Absorption.csv, with OA dots/ Ligand Exchanged dots and ligand spectra according to column labels. ns-Transient absorption data in *.cor files with time in ns accross columns in first row, first column in wavelength /nm and DT/T signal accross wavelength and time in column and rows. Extracted ns-TA data used for fitting in files TA-data-*.csv including fitted curves. Includes column labels. ps-TA, in *.wtf files. with time in fs accross columns in first row, first column in wavelength /nm and DT/T signal accross wavelength and time in column and rows. Sample numbering for TA (ns and ps) is as folowing: 1 = 0.9 eV PbS With TET-CA ligand 2 = 1.0 eV PbS With TET-CA ligand 3 = 1.08 eV PbS With TET-CA ligand 4 = 1.18 eV PbS With TET-CA ligand 5 & 6 = 1.3 eV PbS With TET-CA ligand 14 = 0.9 eV PbS With OA ligand 15 = 1.0 eV PbS With OA ligand 16 = 1.08 eV PbS With OA ligand 17 = 1.18 eV PbS With OA ligand 19 = 1.3 eV PbS With OA ligand Excitation wavelength included in filename as "_XXX_nm_" Measured PLQE values and rate constants are listed in PLQE and k values.csv according the column labels.
DOI: 10.23668/psycharchives.4882
title: Dataset for: Frame analysis of hate speech in Slovenia

description: Codebook and coding results for the frame analysis of user generated online hate speech statements, which were reported to a Slovenian monitoring organization.
DOI: 10.6084/m9.figshare.c.3624122_d1.v1
title: Additional file 12: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Nucleotide alignments. Clusters of interest identified from the 1:1 orthologues clustering method predicted to be under selection pressure based on DN/DS analysis. (ZIP 50 kb)
DOI: 10.17863/cam.83501
title: Research data supporting Investigating the role of the cardiac apelin receptor using human embryonic stem cell derived-cardiomyocytes

description: Supporting video files for thesis entitled "Investigating the role of the cardiac apelin receptor using human embryonic stem cell derived-cardiomyocytes." The powerpoint file contains the videos referenced in the above mentioned thesis. These are representative videos of human embryonic stem cell-derived cardiomyocytes (hESC-CMs), taken using either a standard brightfield microscope or fluorescent microscope, fitted with a LabCam adaptor and videos recorded using an iPhone 7. Each video has an associated legend with further details and scaling. The videos are all in MP4 format. The video files highlight differences observed between wild type hESC-CMs and hESC-CMs carrying genetially manipulated apelin receptor.
DOI: 10.17863/cam.14349
title: Research data supporting "Learning Models for Electron Densities with Bayesian Regression"

description: The data for the reconstruction of the images shown in the paper is contained in *.pckl files. These files were created using Python's pickle module: https://docs.python.org/3.5/library/pickle.html
DOI: 10.6084/m9.figshare.c.3624221_d2.v1
title: Additional file 3: Table S1. of Gene expression profile of intramuscular muscle in Nellore cattle with extreme values of fatty acid

description: Differentially expressed genes for C14:0. Table S2. Differentially expressed genes for C16:0. Table S3. Differentially expressed genes for C18:0. Table S4. Differentially expressed genes for C18:1 cis-9. Table S5.Differentially expressed genes for C18:2 cis-9trans-11. Table S6. Differentially expressed genes for C18:2 cis-6 cis -12 n6. Table S7. Differentially expressed genes for C18:3 n3. Table S8. Differentially expressed genes for SFA. Table S9. Differentially expressed genes for MUFA. Table S10. Differentially expressed genes for PUFA. Table S11. Differentially expressed genes for relationship between PUFA and SFA. Table S12. Differentially expressed genes. Table S13. Differentially expressed genes for n6. Table S14. Differentially expressed genes for the ratio of Ď 6/Ď 3. (XLS 486 kb)
DOI: 10.6084/m9.figshare.c.3624239_d1.v1
title: Additional file 4: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Comparison of performance of the three approaches using known 250 peptidoglycan hydrolases. (XLSX 8Â kb)
DOI: 10.17863/cam.75930
title: Research data supporting "Occurrence of a Brass Texture and Elastic Anisotropy in Laser Blown Powder Processed Superalloy IN718"

description: Data set includes ZIP files containing SEM data (DAT) files and .oip Aztec software operator files for all samples (As-DED-F) included in the study. When accessed in the Aztec file using the .oip file, the full SEM-EDS and SEM-EBSD data from the raw data (DAT) files for each sample can be viewed and manipulated. Please note that the sample names in Aztec may not match the final sample names in the paper or associated folder. Sample designations were changed after acquiring the data for the publication. This data was used in Figures 2 and 3 of the Data-in-Brief publication supporting the article: https://www.sciencedirect.com/science/article/pii/S0921509321010479
DOI: 10.6084/m9.figshare.c.3624239_d2.v1
title: Additional file 12: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Evaluation of domain based approach for the prediction of peptidoglycan hydrolases. (TXT 801 bytes)
DOI: 10.6084/m9.figshare.c.3624239_d4.v1
title: Additional file 3: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Categorization of peptidoglycan hydrolases into four different classes on the basis of their site of action and composition of Negative Dataset as the fifth class. (XLSX 8Â kb)
DOI: 10.6084/m9.figshare.c.3624239_d6.v1
title: Additional file 7: of Prediction of peptidoglycan hydrolases- a new class of antibacterial proteins

description: Metagenomic datasets used for evaluation of performance. (XLSX 9Â kb)
DOI: 10.17863/cam.63945
title: Research data supporting "Weakly nonlinear Holmboe waves"

description: This dataset contains: - weakly nonlinear code.zip: all the MATLAB .m code files used to produce the results of the paper. This folder is organised in multiple folders and subfolders. It also contains a short screencast video showing how to run some tricky parts of the code. The Output subfolder contains the raw .mat data to reproduce figures 3,4,6,7,8,9 of the paper. - weakly nonlinear code README.pdf: all details about how to run the above code, its folder structure, details about inputs/outputs of individual subroutines, with flow charts to explain how to run successive parts of the code to produce useful outputs. - final plotting code.zip: the MATLAB .m code files used to plot figures 3,4,6,7,8,9, using the output data in the above folder. Further minor (manual) editing was required, but these codes make it at least clear how to access the non-trivial output data structures to plot useful results. The weakly nonlinear code folder contains multiple 'basic' plotting subroutines to plot raw results to guide research, but these were not used directly for the plots in the paper (except for figure 5, which is quite basic). These codes are sufficient to reproduce all results in the paper, and are suitable to serve as a basis for future work on weakly nonlinear Holmboe waves, as outlined in the conclusion of the paper.
DOI: 10.6084/m9.figshare.c.3624335_d1.v1
title: Additional file 1: of A comparative analysis of vaccine administration in urban and non-urban skilled nursing facilities

description: Customized database used in this study. (XLSX 2173Â kb)
DOI: 10.6084/m9.figshare.c.3624347_d1.v1
title: Additional file 1: of Fluid responsiveness prediction using Vigileo FloTrac measured cardiac output changes during passive leg raise test

description: Study dataset. (CSV 8 kb)
DOI: 10.6084/m9.figshare.c.3624359_d1.v1
title: Additional file 1: of Whole-genome optical mapping reveals a mis-assembly between two rRNA operons of Corynebacterium pseudotuberculosis strain 1002

description: C. pseudotuberculosis 1002 sequence placement. This XML file contains the restriction site positions used to the sequence placements by MapSolver™. (XML 88 kb)
DOI: 10.17863/cam.99774
title: Research data supporting "Suppressing cis/trans ‘Ring-flipping’ in Organoaluminium(III)-2-pyridyl Dimers – Design Strategies Towards Lewis Acid Catalysts for Alkene Oligomerisation"

description: Gaussian 16 density functional theory (DFT) calculation outputs supporting 'Suppressing cis/trans ‘Ring-flipping’ in Organoaluminium(III)-2-pyridyl Dimers – Design Strategies Towards Lewis Acid Catalysts for Alkene Oligomerisation'
DOI: 10.6084/m9.figshare.c.3624413_d14.v1
title: Additional file 16: of Close ecological relationship among species facilitated horizontal transfer of retrotransposons

description: Detailed information of two NCBI BioProjects, PRJNA253518 and PRJNA233549. (XLSX 29 kb)
DOI: 10.6084/m9.figshare.c.3624413_d13.v1
title: Additional file 14: of Close ecological relationship among species facilitated horizontal transfer of retrotransposons

description: GenBank accession numbers of protein sequences used for phylogenetic analyses. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3624413_d16.v1
title: Additional file 15: of Close ecological relationship among species facilitated horizontal transfer of retrotransposons

description: Multiple sequence alignments used for phylogenetic analyses. (ZIP 546 kb)
DOI: 10.6084/m9.figshare.c.3624458_d2.v1
title: Additional file 2 of Genome-wide analysis of chemically induced mutations in mouse in phenotype-driven screens

description: Genes potentially not covered by germ line ENU approaches. MGI names and location of genes overlapping H3K27me3 histone marks, which are considered closed genomic areas and hence potentially not targeted by ENU mutations that need to be passed on through the germ line. (TXT 379 kb)
DOI: 10.6084/m9.figshare.c.3624464_d1.v1
title: Additional file 1: of Genome-wide evolutionary and functional analysis of the Equine Repetitive Element 1: an insertion in the myostatin promoter affects gene expression

description: Table S1.A lists the 45,713 loci identified using the ERE1 consensus sequence deposited at the RepBase database as query for a BLAST search against the horse genome reference sequence. Table S1B reports the 34,131 ERE1 loci with sizes similar to the ERE1 consensus (225 ± 10 bp) and with minimum identity to the consensus of 84 %. Table S1.C lists the 27,396 ERE1 loci that are not located inside other repetitive elements. (XLSX 3293 kb)
DOI: 10.6084/m9.figshare.c.3624479_d1.v1
title: MOESM5 of Anti-malarial effect of semi-synthetic drug amitozyn

description: Additional file 5. Drug reduction index of amitozyn/pyrimethamine and pyrimethamine/amitozyn combinations.
DOI: 10.6084/m9.figshare.c.3624575_d3.v1
title: Additional file 8: Table S2. of Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome

description: Differentially expressed transcripts with clusters identified by time series analysis. (XLSX 589Â kb)
DOI: 10.6084/m9.figshare.c.3624599_d1.v1
title: Additional file 1: of Alterations in serum microRNA in humans with alcohol use disorders impact cell proliferation and cell death pathways and predict structural and functional changes in brain

description: List of miRNAs showing changes (at p &lt; 0.1 level) in rat drinking paradigms and mouse neural stem cell exposure paradigms.
DOI: 10.17863/cam.50381
title: Research data supporting "Aerosol-jet printing facilitates the rapid prototyping of microfluidic devices with versatile geometries and precise channel functionalization"

description: The data is split into separate folders for each figure. Figure 1 Contains the raw SEM images used Figure 2 Has one excel file with the Mean and StdDev of each well imaged. ImageJ was used to obtain the data from the images. The raw images can be found in the two folders called Gradient Test Chip 1/2. These folders contain .tif stacks of the 8 well positions which can be read using ImageJ. Figure 3 Excel File Figure 3 A The first sheet has the data that was plotted The second sheet 'Combined Data' has the raw data from Dektak measuring of the different steps as well as the combined data from the rest of the sheets which are the raw dumps of the images Excel File Figure 3 C Has the full data of the measured slope as well as the section that was plotted for easy of viewing the results. Figure 4 The Stack file shows the solution being pushed through the device. This is where the image in Figure 4 was taken.
DOI: 10.6084/m9.figshare.c.3624593_d2.v1
title: Additional file 1: Table S1. of Metabolic gene expression profile in circulating mononuclear cells reflects obesity-associated metabolic inflexibility

description: Macronutrient composition of liquid mixed meals. (XLSX 9Â kb)
DOI: 10.17863/cam.87936
title: Data supporting: "Bond strength and confinement in reinforced concrete"

description: This dataset contains results from an experimental programme that investigated the effects of different confinement contributions on the steel-to-concrete bond of reinforcement embedded in concrete. It includes information on concrete mix composition, results from standard material characterisation tests (i.e. compressive strength on cubes and cylinders, indirect tensile splitting strength), measurements of bond strength from eccentric half-joint cantilever bond test and bond stress-slip curves.
DOI: 10.6084/m9.figshare.c.3624593_d3.v1
title: Additional file 2: Table S2. of Metabolic gene expression profile in circulating mononuclear cells reflects obesity-associated metabolic inflexibility

description: Primers used for SYBR Green Assay and their properties. (XLSX 11Â kb)
DOI: 10.17863/cam.36807
title: Research data supporting "Encapsulation of methylammonium lead bromide perovskite in nanoporous GaN"

description: Supporting data for the article titled "Encapsulation of methylammonium lead bromide perovskite in nanoporous GaN". The article was accepted for publication in 2019 in the journal "APL Materials". Supplementary material is available from the publisher (AIP). The data files provided are named according to the specific figures in the article in which they are used. Data for Figure 3: Scanning transmission electron microscopy and energy dispersive X-ray spectroscopy (STEM-EDX) data (.ser) and metadata (.emi), as well as elemental maps of the spatial distribution of Ga, Pb, Br in a perovskite/porous GaN composite (2D arrays of the peak intensity of the respective K-alpha lines extracted from the EDX spectra at each point, in CSV format). Data for Figures 4 and 5: Photoluminescence (PL) emission spectra of perovskite samples presented in a two-column CSV format with one header row. Data for Figure S1: EDX spectra of a perovskite/porous GaN composite measured on a pore and between pores, presented in a two-column CSV format with one header row.
DOI: 10.6084/m9.figshare.c.3624590_d4.v1
title: Additional file 8: of Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

description: Recombination bins in the CH5 genetic map. Table showing the number of markers, number of scaffolds, cumulative scaffold length and sequence characteristics for each recombination bin in the CH5 genetic map. (XLSX 215 kb)
DOI: 10.15468/dl.f83zvu
title: Occurrence Download

description: A dataset containing 35266 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Anaxyrus boreas (Baird & Girard, 1852))"
 ]
}

 The dataset includes 35266 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037832-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3624722_d1.v1
title: Additional file 1: of Risk factors for elevated liver enzymes during refeeding of severely malnourished patients with eating disorders: a retrospective cohort study

description: Raw Data Table. (XLSX 133 kb)
DOI: 10.6084/m9.figshare.c.3624728_d1.v1
title: Additional file 12: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

description: Pathways ( n  = 68) and contributing genes altered in distal gut of Atlantic salmon fed a soybean meal (SBM) diet. (XLSX 79 kb)
DOI: 10.6084/m9.figshare.c.3624734_d1.v1
title: Additional file 2 of Measuring the potential of individual airports for pandemic spread over the world airline network

description: Airport AEF values. This CSV file gives the AEF of the airports as calculated and used in the current study. Airports are indexed by IATA code, and also by city and country. AEF values are normalized to the range 0,100. (CSV 131 kb)
DOI: 10.6084/m9.figshare.c.3624728_d2.v1
title: Additional file 7: of Differential responses of the gut transcriptome to plant protein diets in farmed Atlantic salmon

description: List of common and unique pathways that were significantly altered ( P -value
DOI: 10.15468/dl.hzmz92
title: Occurrence Download

description: A dataset containing 18509 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Myiarchus nuttingi Ridgway, 1882"
 ]
}

 The dataset includes 18509 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037833-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17863/cam.78207
title: Research data supporting "Discrepancies between two long-term dietary datasets in the United Kingdom (UK)"

description: IMPORTANT: there is a later version of this dataset at https://doi.org/10.17863/CAM.91760 (version 3) $$ \ $$ This data supports the publication titled 'Discrepancies between two long-term dietary datasets in the United Kingdom (UK)'. Longitudinal dietary data for the United Kingdom (UK) on food supply, provided by FAO food balance sheets (1961-2018) (FAO-FBS), and food purchases, provided Defra household budget surveys (National Food Survey [1942-2000] and Family Food Module [2001-2018]) (Defra-HBS). Studying dietary trends can shed light on progress towards healthier and more sustainable diets but longitudinal data are often confounded by lack of standardized methods. Two main data sources are often used for longitudinal analysis of diets: food balance sheets (per capita food supply estimated from production and trade data) and household budget surveys (household surveys on food purchased). The impact of these different collection methods has not been quantified for the UK. The data provided here were used to assess how trends in dietary change compared between the two collection methods for calories, meat and fish, nuts and pulses, and dairy, and how disparities between FAO-FBS and Defra-HBS have changed over time. These food types are comparable between FAO-FBS and Defra-HBS and can be used to monitor consumption and protein intake. The primary differences in quantities estimated by FAO-FBS and Defra-HBS occur in part due to inclusion of retail waste in FAO data and likely under-reporting of consumption in Defra data. “DataFrom_Figures_2_3_4_Tables_2_3” contains data used in the figures and tables of this publication. UK National Food Survey data for 1942-1973 were downloaded on 08/01/2020 from https://webarchive.nationalarchives.gov.uk/ukgwa/20130103024837/http://www.defra.gov.uk/statistics/foodfarm/food/familyfood/nationalfoodsurvey/ National Food Survey data are named: “Household nutrient data from 1940 to 2000 – 1940-2000” and “Household consumption of selected foods from 1942 to 2000 – 1942-2000”. UK Family Food data for 1974 onwards were first downloaded on 19/02/2020 from https://www.gov.uk/government/statistical-data-sets/family-food-datasets. Datasets are named “UK - household purchases”, “UK - eating out purchases” and “UK - household and eating out nutrient intakes”.
DOI: 10.17863/cam.108917
title: Research data supporting "Threshold voltage mapping at the nanoscale of GaN-based high electron mobility transistor structures using hyperspectral scanning capacitance microscopy"

description: The dataset includes data for the associated article, encompassing the atomic force microscopy (AFM, in PeakForce Tapping mode), conventional and hyperspectral scanning capacitance microscopy (SCM), and scanning capacitance spectroscopy (SCS) data related to the GaN-based high electron mobility transistor (HEMT) structures. All the data were acquired using a Bruker Dimension Icon Pro AFM. The AFM was coupled with a Bruker SCM module when collecting the SCM and SCS data. All the data are saved as '.spm' files viewable with Bruker's NanoScope Analysis software. The hyperspectral SCM data can be further analysed using the freeware Hyperspy.
DOI: 10.6084/m9.figshare.c.3624797_d4.v1
title: Additional file 1: of On the role of ethylene, auxin and a GOLVEN-like peptide hormone in the regulation of peach ripening

description: Excel file with the microarrary data. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.c.3624797_d5.v1
title: Additional file 7: of On the role of ethylene, auxin and a GOLVEN-like peptide hormone in the regulation of peach ripening

description: Table with the list of oligonucleotides used in the qRT-PCR experiments. (XLS 21Â kb)