cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.x5ebfk
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhaphidophora mima P.C.Boyce"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101924-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3brcuc
title: Occurrence Download

description: A dataset containing 18345 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canarium L."
 ]
}

 The dataset includes 18345 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201924-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.87yezw
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus diaphanus Schrad."
 ]
}

 The dataset includes 117 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0099217-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6a6qm
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arnebia purpurea Erik & Sümbül"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0178046-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3brn4
title: Occurrence Download

description: A dataset containing 1178 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Canella P.Br."
 ]
}

 The dataset includes 1178 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0202073-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjhzye
title: Occurrence Download

description: A dataset containing 7118 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Halictidae"
 ]
}

 The dataset includes 7118 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101927-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9gewuz
title: Occurrence Download

description: A dataset containing 868840 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Atethmia centrago (Haworth, 1809), Athetis gluteosa (Treitschke, 1835), Autographa gamma (Linnaeus, 1758))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 868840 records from 1163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073379-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14676074
title: Supplement to "Proof of concept for Bayesian inference of dynamic rating curve uncertainty" (v2.1.0)

description: This deposit contains part of the updated supplement to “Proof of concept for Bayesian inference of dynamic rating curve uncertainty” (Cornelio et al. 2024, HSJ). This version, in particular, contains two files in which the following changes were made from the earlier version (v2.0.1):



250117_Lbn_RC_new.R is the updated R code. The argument for the random number generator (RNG) kind is defined for the set.seed() functions used in the script. 

Lbn-DMs-csv0.csv is the updated input file containing the stage-discharge gaugings. The column for the stage values has been renamed to "H_rec" (instead of "H_m" as in the original CSV) to be consistent with the attribute name used throughout the R code. 


Except for the above files, all the input and output files in v2.0.1 remain unchanged.
DOI: 10.5281/zenodo.14676075
title: Supplement to "Proof of concept for Bayesian inference of dynamic rating curve uncertainty" (v2.1.0)

description: This deposit contains part of the updated supplement to “Proof of concept for Bayesian inference of dynamic rating curve uncertainty” (Cornelio et al. 2024, HSJ). This version, in particular, contains two files in which the following changes were made from the earlier version (v2.0.1):



250117_Lbn_RC_new.R is the updated R code. The argument for the random number generator (RNG) kind is defined for the set.seed() functions used in the script. 

Lbn-DMs-csv0.csv is the updated input file containing the stage-discharge gaugings. The column for the stage values has been renamed to "H_rec" (instead of "H_m" as in the original CSV) to be consistent with the attribute name used throughout the R code. 


Except for the above files, all the input and output files in v2.0.1 remain unchanged.
DOI: 10.6084/m9.figshare.28219010
title: GARDEN

description: Quantitative Characterization and Interpretation of Rare Spatial and Transcriptomic Heterogeneity from Spatial Omics using GARDEN
DOI: 10.6084/m9.figshare.28219010.v1
title: GARDEN

description: Quantitative Characterization and Interpretation of Rare Spatial and Transcriptomic Heterogeneity from Spatial Omics using GARDEN
DOI: 10.15468/dl.k9mngb
title: Occurrence Download

description: A dataset containing 1780 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((187.25538 -13.3635,187.0827 -13.46711,187.39928 -13.92182,188.51017 -14.16933,189.29874 -14.53195,190.76074 -14.3823,190.65714 -14.08299,190.21393 -13.98514,189.33296 -14.03725,189.03365 -14.02574,188.55591 -13.85882,188.21056 -13.68039,187.70403 -13.48468,187.25538 -13.3635))"
 ]
}

 The dataset includes 1780 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073382-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zex2kg
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((185.73276 -18.37444,185.56799 -19.21561,184.90893 -19.53646,184.50136 -19.63185,184.1805 -20.59442,184.38863 -21.17544,184.7962 -21.60036,185.48995 -21.59168,185.55065 -20.95864,185.59401 -19.82263,186.21838 -18.5392,185.73276 -18.37444))"
 ]
}

 The dataset includes 65 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073383-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcj84s
title: Occurrence Download

description: A dataset containing 133171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "TaxonKey is Aves",
 "Year 2025-2025"
 ]
}

 The dataset includes 133171 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073363-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38q8tz
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((-67.38131 17.84981,-65.58253 17.84981,-65.58253 18.55368,-67.38131 18.55368,-67.38131 17.84981))"
 ]
}

 The dataset includes 27 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073384-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.834h85
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pyrgulopsis sancarlosensis Hershler, 1988"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073385-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28225577
title: data

description: <b>Bioinformatics-based analysis of circadian rhythm regulation mechanisms in Parkinson's disease</b>
DOI: 10.6084/m9.figshare.28225577.v1
title: data

description: <b>Bioinformatics-based analysis of circadian rhythm regulation mechanisms in Parkinson's disease</b>
DOI: 10.5281/zenodo.14649214
title: Improvement of Data Analytics Techniques in Reflection High Energy Electron Diffraction to Enable Machine Learning

description: Reflection high energy electron diffraction (RHEED) videos used for testing of codes in the publication. Filenames correspond to sample numbers in the Auburn FINO Lab for LFO samples grown on Dec 11, 2020. In the manuscript, Figures 2 and 3 were generated from 121120_1. Figures 4 and 5 were generated from 121120_2. Figures 6 and 7 were generated by combining the videos from 121120_1 and 121120_3. 

Python-based principal component analysis and k-means clustering codes used to process these videos are available on Github through the link in this repository.
DOI: 10.5281/zenodo.14649215
title: Improvement of Data Analytics Techniques in Reflection High Energy Electron Diffraction to Enable Machine Learning

description: Reflection high energy electron diffraction (RHEED) videos used for testing of codes in the publication. Filenames correspond to sample numbers in the Auburn FINO Lab for LFO samples grown on Dec 11, 2020. In the manuscript, Figures 2 and 3 were generated from 121120_1. Figures 4 and 5 were generated from 121120_2. Figures 6 and 7 were generated by combining the videos from 121120_1 and 121120_3. 

Python-based principal component analysis and k-means clustering codes used to process these videos are available on Github through the link in this repository.
DOI: 10.15468/dl.whn9yp
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((159.88439 -11.96083,160.70782 -11.96083,160.70782 -11.40712,159.88439 -11.40712,159.88439 -11.96083))"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073389-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28225643
title: FSE_2025_IVR_32_Bug_Report_Toxicity

description: This repository presents a qualitative analysis of toxicity for bug reports on GitHub-based projects
DOI: 10.15468/dl.n8jnau
title: Occurrence Download

description: A dataset containing 1070 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((176.87329 -20.07044,181.31808 -20.07044,181.31808 -16.15327,176.87329 -16.15327,176.87329 -20.07044))"
 ]
}

 The dataset includes 1070 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073390-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wufq9j
title: Occurrence Download

description: A dataset containing 1092 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((210.52418 -17.47837,210.38641 -17.51044,210.36028 -17.58051,210.37453 -17.67434,210.40185 -17.76579,210.52536 -17.80498,210.78784 -17.90118,210.9066 -17.89524,210.95767 -17.8026,210.77833 -17.69215,210.77715 -17.61852,210.70232 -17.52113,210.52418 -17.47837))"
 ]
}

 The dataset includes 1092 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073391-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28208036
title: Dead fine fuel moisture content. 2012-2014. South East Australia

description: Dead fuel moisture content data associated with:Nolan, R.H., V. Resco de Dios, M.M. Boer, G. Caccamo, M.L. Goulden and R.A. Bradstock. 2016. Predicting dead fine fuel moisture at regional scales using vapour pressure deficit from MODIS and gridded weather data. <i>Remote Sensing of Environment</i>. 174:100-108.Data contains:Profile 1-hour dead fuel moisture content: the litter layer down to the soil, including leaves, bark, twigs (&lt;6 mm). Does not include duff layer.Duff dead fuel moisture content: Sampled if present. Partly decomposed fuel on the soil surface.Suspended 1-hour dead fuel moisture content: (&lt;6 mm diameter) dead material suspended off the ground, includes leaves, bark, and twigs suspended in shrubs.Suspended 10-hour dead fuel moisture content: (6-25 mm diameter) dead material suspended off the ground, generally fallen branches, detached from plant and not touching the ground.Note, some samples include free water, and thus the moisture content values extend beyond the fibre saturation point (~35%).
DOI: 10.15468/dl.bf386v
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((210.17319 -17.46233,210.07591 -17.46516,210.04368 -17.50814,210.11663 -17.56526,210.15848 -17.60711,210.21617 -17.59919,210.25236 -17.54094,210.25236 -17.49796,210.24049 -17.47081,210.17319 -17.46233))"
 ]
}

 The dataset includes 268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073392-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14676102
title: Supplementary data for "Insights into dynamics of rock-ice avalanches over various erodible beds: small-scale field experiments"

description: We are releasing the data of Figs. 10,11,12,13,14&15 in our manuscript submitted to Journal of Geophysical Research: Earth Surface
DOI: 10.5281/zenodo.14676103
title: Supplementary data for "Insights into dynamics of rock-ice avalanches over various erodible beds: small-scale field experiments"

description: We are releasing the data of Figs. 10,11,12,13,14&15 in our manuscript submitted to Journal of Geophysical Research: Earth Surface
DOI: 10.6084/m9.figshare.28219115
title: Nucleosome occupancy of Nannochloropsis oceanica under HC and LC conditions

description: Nucleosome occupancy profiles measured by MNase-Seq, HC_0h vs LC_24h.
DOI: 10.6084/m9.figshare.28219115.v1
title: Nucleosome occupancy of Nannochloropsis oceanica under HC and LC conditions

description: Nucleosome occupancy profiles measured by MNase-Seq, HC_0h vs LC_24h.
DOI: 10.15468/dl.a2vmz7
title: Occurrence Download

description: A dataset containing 217 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bernice P. Bishop Museum",
 "Geometry POLYGON((208.92922 -16.84228,209.10287 -16.84228,209.10287 -16.65784,208.92922 -16.65784,208.92922 -16.84228))"
 ]
}

 The dataset includes 217 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073393-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tzehk
title: Occurrence Download

description: A dataset containing 663550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Catoptria verellus Zincken, 1917, Celypha rivulana (Scopoli, 1763), Celypha striana (Denis & Schiffermüller), 1775, Charanyca trigrammica (Hufnagel, 1766), Charissa italohelveticus (Rezbanyai-Reser, 1986), Chiasmia clathrata (Linnaeus, 1758), Chlorissa viridata (Linnaeus, 1758), Chloroclysta siterata (Hufnagel, 1767), Chrysoteuchia culmella Linnaeus, 1758, Cnephasia asseclana (Denis & Schiffermüller), 1775)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990"
 ]
}

 The dataset includes 663550 records from 1030 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073387-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12648166
title: The Role of Ciliary Function in Airway Epithelial Defense against Pseudomonas aeruginosa

description: This archive contains the data produced after the bioinformatic analysis for the study "The Role of Ciliary Function in Airway Epithelial Defense against Pseudomonas aeruginosa". 

In particular, it contains the following files:



salmon.merged.gene_counts.tsv  Raw counts from Salmon v1.10.0  produced as output after running  the nf-core RNA-seq pipeline version 3.10.1.     

hAO_inf_hAO_ctrl_IHWsigFCgenes.xlsx Differentially expressed genes produced using Bioconductor package DESeq2 v1.38.3.
DOI: 10.5281/zenodo.12648167
title: The Role of Ciliary Function in Airway Epithelial Defense against Pseudomonas aeruginosa

description: This archive contains the data produced after the bioinformatic analysis for the study "The Role of Ciliary Function in Airway Epithelial Defense against Pseudomonas aeruginosa". 

In particular, it contains the following files:



salmon.merged.gene_counts.tsv  Raw counts from Salmon v1.10.0  produced as output after running  the nf-core RNA-seq pipeline version 3.10.1.     

hAO_inf_hAO_ctrl_IHWsigFCgenes.xlsx Differentially expressed genes produced using Bioconductor package DESeq2 v1.38.3.
DOI: 10.15468/dl.cmjqya
title: Occurrence Download

description: A dataset containing 8584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Euploea mulciber (Cramer, 1777), Papilio protenor Cramer, 1775, Papilio nephelus Boisduval, 1836, Papilio noblei de Nicéville, 1889, Dichorragia nesimachus Boisduval, 1836, Papilio helenus Linnaeus, 1758, Eurema mandarina, Papilio bianor Cramer, 1777, Appias lyncida (Cramer, 1779))",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8584 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032207-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1121944
title: Data from an Archaeological Trial Trench Evaluation at Plymouth College of Art, Tavistock Place, Plymouth, Devon, April - May 2012

description: This digital archive comprises images, cad, report and spreadsheet data from an archaeological trial trench evaluation at the Plymouth College of Art, Tavistock Place, Plymouth, Devon, centred on National Grid Reference (NGR) 248200,054695. The work was undertaken by Wessex Archaeology between 02nd April 2012 till 15th May 2012.
DOI: 10.15468/dl.vugqns
title: Occurrence Download

description: A dataset containing 13787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is one of (Conchological Society of Great Britain & Ireland: non-marine mollusc records, iNaturalist Research-grade Observations, Conchological Society of Great Britain & Ireland: non-marine molluscs (1999 Atlas dataset), Suffolk Biodiversity Information Service (SBIS) Dataset, All taxa records for Leicestershire and Rutland, BRERC species records from all years at full resolution excluding Notable Species within the last 10 years, SER Species-based Surveys, National Trust Species Records, iSpot British Isles observations, Rotherham Biological Records Centre - Non-sensitive Records from all taxonomic groups)",
 "GadmGid is GBR.1_1",
 "TaxonKey is Cepaea hortensis (O.F.Müller, 1774)"
 ]
}

 The dataset includes 13787 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032209-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12764026
title: DATA, CODE: Theory and simulation for low frequency interfacial polarization of plant root cell

description: The data and simulation codes used in the study.
DOI: 10.5281/zenodo.12764027
title: DATA, CODE: Theory and simulation for low frequency interfacial polarization of plant root cell

description: The data and simulation codes used in the study.
DOI: 10.15468/dl.qme6w5
title: Occurrence Download

description: A dataset containing 12473 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abrus precatorius L."
 ]
}

 The dataset includes 12473 records from 465 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032211-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7a2ueh
title: Occurrence Download

description: A dataset containing 66688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Melanocorypha calandra (Linnaeus, 1766)",
 "Year 1901-2024"
 ]
}

 The dataset includes 66688 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032210-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.raxeej
title: Occurrence Download

description: A dataset containing 688 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Trachurus trachurus (Linnaeus, 1758)",
 "Year 1901-2024"
 ]
}

 The dataset includes 688 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032212-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8x562a
title: Occurrence Download

description: A dataset containing 1135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Lynx pardinus (Temminck, 1827)",
 "Year 1901-2024"
 ]
}

 The dataset includes 1135 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032213-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7utrk
title: Occurrence Download

description: A dataset containing 1971953 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Year 2020-2024"
 ]
}

 The dataset includes 1971953 records from 862 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032202-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.