cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.khrazp
title: Occurrence Download

description: A dataset containing 475542 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cardellina pusilla (A.Wilson, 1811)",
 "Year 2022-2025"
 ]
}

 The dataset includes 475542 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015827-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j286rn
title: Occurrence Download

description: A dataset containing 475820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cardellina pusilla (A.Wilson, 1811)",
 "Year 2022-2025"
 ]
}

 The dataset includes 475820 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015826-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwte6t
title: Occurrence Download

description: A dataset containing 231638 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cardellina pusilla (A.Wilson, 1811)",
 {
 "or" : [
 "Year 2022-2022",
 "Year 2022-2022"
 ]
 }
 ]
}

 The dataset includes 231638 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015830-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fypcps
title: Occurrence Download

description: A dataset containing 475820 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Cardellina pusilla (A.Wilson, 1811)",
 {
 "or" : [
 "Year 2022-2025",
 "Year 2022-2025"
 ]
 }
 ]
}

 The dataset includes 475820 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015824-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9ehlfzm
title: Water use information for sites sampled by the California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP), 2004-2021 (ver. 4.0, April 2025)

description: The U.S. Geological Survey collected water-quality samples from 3,359 sites between May 2004 and November 2024 for the California Groundwater Ambient Monitoring and Assessment Program Priority Basin Project (GAMA-PBP). The GAMA-PBP is a cooperative project with the California State Water Resources Control Board (SWRCB). The primary objectives of the GAMA-PBP are: (1) to assess the quality of groundwater resources used for public and domestic drinking water supplies, (2) to develop understanding of the natural and anthropogenic processes controlling groundwater quality and changes in groundwater quality, and (3) to improve the availability and usefulness of groundwater quality information to public. This data release publishes site type information and a generalized use category for the sites. The dataset comprises 3,213 wells, 81 springs, and 65 other types of sites. The generalized use category is partially derived from, but is not equivalent to, the use of site and use of water fields from the USGS National Water Information System (NWIS) data archive. Of the 3,063 wells and springs from which water is withdrawn for use, 1,696 are classified as production (includes sites used for public, commercial, industrial, institutional, and desalination water supplies), 1,123 as domestic, 263 as irrigation, and 16 as other water supply uses. Of the remaining sites, 229 are classified as observation wells, 6 are wells and springs from which water is withdrawn and not used, 63 are distribution system taps, and 4 are other types of sites. GAMA-PBP data are also served to the public through the SWRCB's GAMA Groundwater Information System (GAMAGIS), along with data from other federal, state, and local agency sources, and the generalized use categories in this data release are compatible with the use categories in SWRCB GAMAGIS. Prior to publication of this data release, SWRCB GAMAGIS classified all GAMA-PBP sites as "municipal", which resulted in erroneous characterization of approximately half of the sites. The generalized classification provided in this data release greatly improves the accuracy of site characterization, while still complying with Federal policies concerning release of location information for some types of sites.

Version 1.0 posted September 29, 2021
Version 2.0 posted September 2, 2022
Version 3.0 posted October 25, 2023
Version 4.0 posted April 10, 2025
DOI: 10.18131/hd343-9s084
title: MLC - STAMP data

description: Supplementary data for article Lebrun-Corbin M, Cheung BH, Hullahalli K, Dailey KG, Bailey K, Waldor MK, Wunderink RG, Bachta KER, Hauser AR.0.Pseudomonas aeruginosa population dynamics in a vancomycin-induced murine model of gastrointestinal carriage. mBio0:e03136-24.https://doi.org/10.1128/mbio.03136-24.
DOI: 10.18131/vpztq-web66
title: MLC - GI carriage data

description: Supplementary data for article Lebrun-Corbin M, Cheung BH, Hullahalli K, Dailey KG, Bailey K, Waldor MK, Wunderink RG, Bachta KER, Hauser AR.0.Pseudomonas aeruginosa population dynamics in a vancomycin-induced murine model of gastrointestinal carriage. mBio0:e03136-24.https://doi.org/10.1128/mbio.03136-24.
DOI: 10.18131/9c7mr-h2j95
title: MLC data - strain sequences
DOI: 10.25345/c5pg1j14x
title: MassIVE MSV000097594 - Pingping_2025_NC_N-acetyl-l-leucine_PD
title: Abstract N-acetyl-L-leucine (NALL), a derivative of the branched-chain amino acid leucine, has shown therapeutic potential in neurodegenerative diseases, including in prodromal stages of Parkinson s disease (PD). However, the mechanism of its protective effects has been largely unknown. Using discovery-based proteomics, we found that treatment with NALL led to upregulation of lysosomal, mitochondrial, and synaptic proteins in PD patient-derived dopaminergic neurons. NALL reduced levels of pathological pS129-alpha-synuclein in dopaminergic neurons from patients harboring GBA1 or LRRK2 mutations. This decrease in pS129-syn was dependent on serine protease HTRA1 that was induced by NALL treatment of dopaminergic neurons. NALL also upregulated expression of wild-type parkin in both GBA1 and LRRK2 mutant neurons, leading to an increase in functional dopamine transporter and synaptic membrane-associated synaptojanin-1, suggesting improved synaptic function. Furthermore, NALL treatment of mutant LRRK2R1441C knock-in mice led to decreased pS129-alpha-synuclein, increased parkin and improved dopamine-dependent motor learning deficits. These findings highlight the therapeutic potential of NALL in PD by its protective effects on alpha-synuclein pathology and synaptic function in vulnerable dopaminergic neurons.
DOI: 10.25345/c5jq0t718
title: MassIVE MSV000097595 - Dietary intake of a milk sphingolipid-rich MFGM/EV concentrate ameliorates age-related metabolic dysfunction | Duodenum | Sprenger et al. 2025
title: Lipidomic analysis of duodenum samples from aged rats with and without dietary intervention with an MFGM/EV-rich concentrate. In short, 9 or 10 duodenum samples per intervention group were analyzed by MSaLL analysis. Uploaded data includes .raw files, ALEX123 search results, a sample list as well as a list with spike amounts of internal lipid standards. A detailed description of the analysis is provided in the publication with the title: Dietary intake of a milk sphingolipid-rich MFGM/EV concentrate ameliorates age-related metabolic dysfunction.
DOI: 10.48577/jpl.wzf3jg
title: Main Belt Asteroid Mass Estimation from High-Precision Astrometry

description: Main Belt Asteroid Mass Estimation from High-Precision Astrometry
DOI: 10.7924/r4gt5vw12
title: Data from: Better baboon breakups: collective decision theory of complex social network fissions

description: Many social groups are made up of complex social networks in which each individual tends to associate with a distinct subset of its groupmates. If social groups increase in size over time, competition often leads to permanent group fission. During such fissions, complex social networks present both a collective decision problem and a multidimensional optimization problem: it is advantageous for each individual to remain with their closest allies after a fission, but impossible for every individual to do so. Here, we develop computational algorithms designed to simulate group fissions in a network theoretic framework. We focus on three fission algorithms ("democracy" "community," and "despotism") that fall on a spectrum from a democratic to a dictatorial collective decision. We parameterize our social networks with data from baboons (Papio cynocephalus) and compare our simulated fissions with actual baboon fission events. We find that the democracy and community algorithms (i.e., egalitarian decisions where each individual influences the outcome) better maintain social networks during simulated fissions than despotic decisions (those driven primarily by a single individual). We also find that egalitarian decisions are good at predicting the observed individual-level outcomes of observed fissions, although the observed fissions often disturbed their social networks more than the simulated egalitarian fissions.
DOI: 10.5281/zenodo.15191791
title: Annotated BED files of SNVs in Whole Genome (WG) generated with VEP

description: These BED files represent Single Nucleotide Variants (SNVs) distributed across the entire human genome (whole genome – WG). The variants were extracted from publicly available VCF files and filtered according to allele frequency and clinical relevance. Only biallelic SNVs were retained. The annotation includes chromosome, genomic position, reference allele, alternate allele, and variant type. These files were generated as part of a broader study investigating the mutational landscape of the human genome and the co-occurrence of variants with different evolutionary origins and functional consequences.

File descriptions:



SNPs_WC.bed.gz: Common biallelic SNVs with allele frequency (AF) ≥ 1% in at least two of the seven global superpopulations from the Human Genome Diversity Project (HGDP).

rares_WG.bed.gz: Rare biallelic SNVs with allele frequency (AF) < 1% across all seven global superpopulations from the HGDP.

patho_WC.bed.gz: Clinically relevant SNVs from ClinVar with curated status and classified as pathogenic, associated with high-penetrance genetic diseases.

benign_WC.bed.gz: SNVs from ClinVar classified as benign or likely benign, with curated clinical significance.

cosmic_WC.bed.gz: Somatic SNVs from the COSMIC database, reported in tumor samples and associated with cancer.


 

These datasets aim to support further analysis and replication of our study findings.
DOI: 10.5281/zenodo.15191792
title: Annotated BED files of SNVs in Whole Genome (WG) generated with VEP

description: These BED files represent Single Nucleotide Variants (SNVs) distributed across the entire human genome (whole genome – WG). The variants were extracted from publicly available VCF files and filtered according to allele frequency and clinical relevance. Only biallelic SNVs were retained. The annotation includes chromosome, genomic position, reference allele, alternate allele, and variant type. These files were generated as part of a broader study investigating the mutational landscape of the human genome and the co-occurrence of variants with different evolutionary origins and functional consequences.

File descriptions:



SNPs_WC.bed.gz: Common biallelic SNVs with allele frequency (AF) ≥ 1% in at least two of the seven global superpopulations from the Human Genome Diversity Project (HGDP).

rares_WG.bed.gz: Rare biallelic SNVs with allele frequency (AF) < 1% across all seven global superpopulations from the HGDP.

patho_WC.bed.gz: Clinically relevant SNVs from ClinVar with curated status and classified as pathogenic, associated with high-penetrance genetic diseases.

benign_WC.bed.gz: SNVs from ClinVar classified as benign or likely benign, with curated clinical significance.

cosmic_WC.bed.gz: Somatic SNVs from the COSMIC database, reported in tumor samples and associated with cancer.


 

These datasets aim to support further analysis and replication of our study findings.
DOI: 10.48577/jpl.ghc3kt
title: THE MARS 2020 SAMPLE IMAGE COMPENDIUM

description: No abstract available.
DOI: 10.18131/1vnt7-4ww88
title: MLC - GI carriage data

description: Supplementary data for article Lebrun-Corbin M, Cheung BH, Hullahalli K, Dailey KG, Bailey K, Waldor MK, Wunderink RG, Bachta KER, Hauser AR.0.Pseudomonas aeruginosa population dynamics in a vancomycin-induced murine model of gastrointestinal carriage. mBio0:e03136-24.https://doi.org/10.1128/mbio.03136-24.
DOI: 10.18131/3kpd1-kzm11
title: MLC data - strain sequences
DOI: 10.18131/52nd9-62249
title: MLC - microbiome data
DOI: 10.18131/8naqx-kja91
title: MLC - microbiome data
DOI: 10.18131/hqzrw-ngh91
title: MLC - STAMP data

description: Supplementary data for article Lebrun-Corbin M, Cheung BH, Hullahalli K, Dailey KG, Bailey K, Waldor MK, Wunderink RG, Bachta KER, Hauser AR.0.Pseudomonas aeruginosa population dynamics in a vancomycin-induced murine model of gastrointestinal carriage. mBio0:e03136-24.https://doi.org/10.1128/mbio.03136-24.
DOI: 10.18131/mm90p-bad52
title: MLC - triclosan susceptibility data

description: Supplementary data for article Lebrun-Corbin M, Cheung BH, Hullahalli K, Dailey KG, Bailey K, Waldor MK, Wunderink RG, Bachta KER, Hauser AR.0.Pseudomonas aeruginosa population dynamics in a vancomycin-induced murine model of gastrointestinal carriage. mBio0:e03136-24.https://doi.org/10.1128/mbio.03136-24.
DOI: 10.48577/jpl.8jywnl
title: ORCAA: An analogue Europa Cryobot mission to the Juneau Icefield, AK

description: No abstract available.
DOI: 10.34740/kaggle/dsv/11359392
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.6084/m9.figshare.28771088
title: Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis

description: These data support the unpublished manuscript <i>"Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis"</i> (Maldonado et al., Manuscript ID: SDATA-24-04380).<b>1. Genome Assembly and Annotation</b><b>Genome Assembly of Orestias ascotanensis.fa</b>: Reference genome in FASTA format (originally published in Di Genova et al. 2022).<b>annotation_Orestias (1).gtf</b>: Structural annotation (GTF format) of gene models, used for RNA-seq alignment and transcript quantification.<b>03_Gene_Annotation_Orestias_ascotanensis.csv</b>: Detailed functional annotation of protein-coding genes (PCGs), including:Genomic coordinates (scaffold, start, end, strand).Gene/transcript IDs, assigned names, and protein products.Functional terms: InterPro domains, Gene Ontology (GO), KEGG Orthology (KO), and EC numbers.<b>2. Transcriptomic Data</b><b>01_sample_info.csv</b>: Metadata for RNA-seq samples (tissue, season, replicates, etc.).<b>02_PCG_counts.csv</b>: Raw read counts for all protein-coding genes across samples.<b>04_DEGs.xlsx</b>: Differentially expressed genes (DEGs) across conditions, with fold-change, p-values, and adjusted p-values.<b>Table1_MappingStatistics.xlsx</b>: Sequencing and mapping statistics, including read quality metrics, alignment rates, and sample-specific processing details.<b>3. Long Non-Coding RNA (lncRNA) Predictions</b><b>Predicted_lncRNAs_Genomic_Locations_Orestias_ascotanensis.zip</b>: BED files with genomic coordinates of lncRNAs predicted by four tools (CPAT, TransDecoder, FEELnc, RNAmining), including scaffold, coordinates, strand, and transcript IDs (where available).
DOI: 10.5281/zenodo.15191878
title: Pan-Guiana shoreline position 1988 - 2023

description: Dataset of the relative position of the entire Guiana coastline, Northern South America, between the Amazon and Orinico Rivers 1988 - 2023. 

Digital Shoreline Analysis System (DSAS) was used to determine relative shoreline position and rates of net and absolution shoreline change every year at alongshore intervals of 200m. This results in more than 5500 transects of shoreline position. 

All shoreline were derived from applying a normalised difference vegetation index to Landsat 5,7 and 8 multispectral satellite data. An image was obtained as close as possible to June 1st each year. Where data did not exist in one year linear temporal interpolation was used.
DOI: 10.5281/zenodo.15191879
title: Pan-Guiana shoreline position 1988 - 2023

description: Dataset of the relative position of the entire Guiana coastline, Northern South America, between the Amazon and Orinico Rivers 1988 - 2023. 

Digital Shoreline Analysis System (DSAS) was used to determine relative shoreline position and rates of net and absolution shoreline change every year at alongshore intervals of 200m. This results in more than 5500 transects of shoreline position. 

All shoreline were derived from applying a normalised difference vegetation index to Landsat 5,7 and 8 multispectral satellite data. An image was obtained as close as possible to June 1st each year. Where data did not exist in one year linear temporal interpolation was used.
DOI: 10.5517/ccdc.csd.cc26njcs
title: CCDC 2045515: Experimental Crystal Structure Determination

description: Related Article: Lu Zhou, Yu Yan, Jianzhong Fan, Qingfang Mu, Xiangchun Li, Wen-Yong Lai|2025|J.Mater.Chem.C|13|7495|doi:10.1039/D4TC05302H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bvvxz
title: CCDC 2170772: Experimental Crystal Structure Determination

description: Related Article: Yang Hao-Chun|2024|CSD Communication|||
description: Related Article: Hao-Chun Yang, Guan-Long Zeng, Su-Ying Chien, Shao-An Hua, Yuta Onohara, Martin Cigl, Alexej Bubnov, Jey-Jau Lee, Damian Pociecha, Krzysztof A. Bogdanowicz, Agnieszka Iwan, Petra Vaňkátová, Věra Hamplová, Kingo Uchida, Yasutaka Kitagawa, Hiroyuki Yoshida, Hsiu-Hui Chen|2025|J.Mater.Chem.C|13|7484|doi:10.1039/D5TC00261C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2frzsz
title: CCDC 2257382: Experimental Crystal Structure Determination

description: Related Article: Yang Hao-Chun|2024|CSD Communication|||
description: Related Article: Hao-Chun Yang, Guan-Long Zeng, Su-Ying Chien, Shao-An Hua, Yuta Onohara, Martin Cigl, Alexej Bubnov, Jey-Jau Lee, Damian Pociecha, Krzysztof A. Bogdanowicz, Agnieszka Iwan, Petra Vaňkátová, Věra Hamplová, Kingo Uchida, Yasutaka Kitagawa, Hiroyuki Yoshida, Hsiu-Hui Chen|2025|J.Mater.Chem.C|13|7484|doi:10.1039/D5TC00261C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ksppr
title: CCDC 2377225: Experimental Crystal Structure Determination

description: Related Article: Wen-Ze Li, Fu-Yu Guo, Sheng Qu, Jing Li, Yi Ru, Xiao-Sa Zhang, Yu Liu, Jian Luan|2025|J.Mater.Chem.C|13|7591|doi:10.1039/D5TC00293A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kspqs
title: CCDC 2377226: Experimental Crystal Structure Determination

description: Related Article: Wen-Ze Li, Fu-Yu Guo, Sheng Qu, Jing Li, Yi Ru, Xiao-Sa Zhang, Yu Liu, Jian Luan|2025|J.Mater.Chem.C|13|7591|doi:10.1039/D5TC00293A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21227/g7vk-1p32
title: Tackling the Optimal Phasor Measurement Unit Placement and Attack Detection Problems in Smart Grids by Incorporating Machine Learning       

description: Smart grid cybersecurity is a critical research challenge due to society's dependence on reliable electricity. Existing research primarily addresses cybersecurity by focusing on the optimal placement of phasor measurement units (PMUs) to ensure topological observability and minimize system costs, followed by developing AI-based attack detection algorithms. However, these studies fail to simultaneously consider system cost, loss in system observability, and false data injection attack (FDIA) detection performance. Thus, this paper proposes a novel approach by formulating this issue as a tri-objective functions optimization problem. The proposed approach optimizes PMU allocation to maximize topological observability and minimize system cost while improving the FDIA detection performance using machine learning. Specifically, the k-Nearest Neighbors (KNN) model's Brier loss is used as an objective function within the Non-Dominated Sorting Genetic Algorithm II (NSGA-II) optimization framework to represent the FDIA detection performance. To demonstrate the proposed approach's efficacy, it is tested on the IEEE 38-bus distribution system. To verify the strength of the developed KNN classifier, we examined it using seven different metrics: accuracy, brier loss, F1-score, elapsed time, learning curve, receiver operating characteristic curve (ROC) curve, and confusion matrix. The simulation results show that the KNN model achieved superior attack classification performance with a top accuracy of 99.99\% and {a minimal Brier loss} of $9.9478 \times 10^{-4}$ on the $\pm0.2\%$ PMU observation tolerance dataset. These results highlight the success of our framework in concurrently optimizing attack detection performance, topological observability, and system cost.
DOI: 10.25345/c5dz03d7w
title: MassIVE MSV000097596 - Dietary intake of a milk sphingolipid-rich MFGM/EV concentrate ameliorates age-related metabolic dysfunction | Lung | Sprenger et al. 2025
title: Lipidomic analysis of lung samples from aged rats with and without dietary intervention with an MFGM/EV-rich concentrate. In short, 8 or 10 lung samples per intervention group were analyzed by MSaLL analysis. Uploaded data includes .raw files, ALEX123 search results, a sample list as well as a list with spike amounts of internal lipid standards. A detailed description of the analysis is provided in the publication with the title: Dietary intake of a milk sphingolipid-rich MFGM/EV concentrate ameliorates age-related metabolic dysfunction.