cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20113853.v1
title: Orgasmic Meditation FDG PET Scans

description: FDG PET scans of subjects during performance of orgasmic meditation (M) and during netutral condition (N)
DOI: 10.6084/m9.figshare.28410926.v1
title: Hydrochemistry data of Guangyuan Thousand-Buddha Grotto

description: Hydrochemistry of rainfall, river and groundwater in the Grotto area
DOI: 10.17632/cr4vwzrd8k
title: Data for: Quantification of randomness (Entropy) as a clinical tool to assess the severity of skin disease

description: Quantitative analysis of the skin is a new, quick, and very efficient method to quantify various skin changes like performing health assessments, determine skin conditions, and evaluating how skin responds to assigned treatment course(s). The quantitative analysis allows to produce universal measures of different skin conditions that would be more accurate and non-biased. It was theoreticized that healthy skin is more structured compared to the affected skin which exhibits more alterations due to neoplastic, inflammatory, or traumatic processes. The dermatology clinic database of deidentified dermatoscopic images of the skin affected by psoriasis and adjacent clinically intact skin were used for the current analysis. All images were captured by Visioscope PC 35 camera device (Courage + Khazaka, Germany ). All images (raw data) were transferred into specially coded and developed proprietary software which enables its users to calculate entropy values for healthy and non-healthy skin. Blank paper (baseline with minimum randomness), gridded paper (interpreted as the simplified model of skin), and chaotic patterns (interpreted as the skin affected by lesions) were used as reference entropy values. The Mann-Whitney U method was used to determine the statistical significance of gathered data. The entropy values for normal unaffected skin exhibited normal distribution with mean of 2.56 with 95% confidence interval of [2.36, 2.75]. The skin affected by psoriasis exhibited normal distribution with mean of 3.30 with 95% confidence of [2.93, 3.66]. The healthy skin has a lower entropy values compared to the entropy values of skin affected by psoriasis. That is because the healthy skin appears to have more uniformed patterns in its structure, while the skin affected by psoriasis exhibits more random features due to traumatic processes and inflammation. The current technique of implying a mathematical algorithm to calculate the Maximum entropy shows promising results because physicians would be able to use universal measures to access skin conditions with minimal sources of error.
DOI: 10.17632/jj3bd76wsr
title: Wear resistance of smooth TiO2 coating obtained by anodic oxidation and sol-gel dip-coating combination - Research Data & Supplemental Files

description: The data represents the results of wear tests using a reciprocating ball-on-flat equipment. The counterpart was a conical, hemispherical tip with a radius of 10 microns. The counterpart oscillated at 0.7 Hz with an amplitude of 4 mm. The loads applied were 39, 78, 117, and 156 mN for 1, 2, 3, and 4 minutes, respectively. The tests were conducted at 22 ± 2 °C, with 40 ± 10% humidity, and without lubrication.
The tests were performed on:
-Two samples of Ti-6Al-4V (TI-1 and TI-2)
-Two samples of Ti-6Al-4V coated with compact and crystalline TiO2, with a thickness of approximately 100 nm (TSS-1 and TSS-2).
-Four samples of Ti-6Al-4V coated with crystalline and semicompact TiO2, with a thickness of approximately 600 nm (TASS-1, TASS-2, TASS-3 y TASS-4).
All surfaces had the same roughness: Ra = 50 nm (measured with a profilometer) and Ra = 15 nm (measured with an AFM). 
For each wear scar, the following measurements were taken:
-The width of the wear scar (2r)
-The penetration of the counterpart (d)
-The volume of wear (V).
DOI: 10.17632/8nthgf7trx
title: Continuous femoral pulse check for cardiopulmonary resuscitation is an improvement compared with intermittent carotid pulse check.

description: The reliability of manual pulse checks has been questioned but is still recommended in cardiopulmonary resuscitation (CPR) guidelines. The aim is to compare the 10-second carotid pulse check (CPC) between cycles with the continuous femoral pulse check (CoFe PuC) in CPR, and to propose a better location to shorten the interruption times for pulse check. CoFe PuC has a good cutoff time and provides effective and quick results compared to the CPC cutoff time, which shortens the interruption time for CPR. CoFe PuC should be recommended as a new and useful method in the CPR guidelines.
DOI: 10.6084/m9.figshare.22844264.v2
title: Reward prediction error facilitates agile motor adaptations

description: Data obtained during study described in the paper Explicit learning based on Reward prediction error facilitates agile motor adaptations.S1 - dataCPA. File containing Cursor Path Area data from all 24 subjectsThe data is composed of 24 rows and 300 columns, where the first 8 rows represent ERR group, next 8 rows represent EPE group and the last 8 rows represent RWD group. Each column shows Cursor Path Area for a specific trial.S2 dataAngle. File containing Cursor angle data from all 24 subjectsThe data is composed of 24 rows and 300 columns, where the first 8 rows represent ERR group, next 8 rows represent EPE group and the last 8 rows represent RWD group. Each column shows Cursor angle for a specific trial.
DOI: 10.6084/m9.figshare.14199998.v1
title: Sexual Behaviors and Immunogenetic Profile of Colombian MSM at HIV Risk Dataset

description: This is a Dataset with information on sociodemographic, sexual behaviors, HIV testing, immunological and genetic characteristics of Men who have sex with Men (MSM) at different risk of HIV exposure from Colombia - South America.
DOI: 10.17632/nc894fnrzr
title: Supplementary Files for A close look at dental caries and developmental defects of enamel in individuals with cerebral palsy: a systematic review and meta-analysis

description: Supplementary files for A close look at dental caries and developmental defects of enamel in individuals with cerebral palsy: a systematic review and meta-analysis
DOI: 10.6084/m9.figshare.28746221.v1
title: Phylogenetic tree of the sdiA gene

description: <i>The phylogenetic tree of Salmonella sdiA gene sequences demonstrate notable genetic diversity across various serovars</i>. <i>A major cluster includes numerous S. </i>Enteritidis<i> strains, such as "Slowbro," "Swellow," "Wailord," and others, which group closely together yet display clear internal branching—suggesting intra-serovar variation within S. </i>Enteritidis<i>. Additional S. </i>Enteritidis<i> strains like "Charizard," "Marill," and "Glaceon" form a distinct subcluster, reinforcing the notion of genetic divergence within the same serovar. Other serovars, including S. </i>Typhimurium<i> (strains 14028 and S34), S. </i>Typhi <i>(Salty24446 1972 and 2017), and S. </i>Dublin<i> (SAL-19-0015), form separate, well-supported clades, indicating serovar-specific evolutionary divergence.</i>
DOI: 10.6084/m9.figshare.24794766.v1
title: growth data_AY.xlsx

description: The data file contains body weight data for yaks of Arunachal Pradesh. This data was used in the estimation of genetic parameters for the population.
DOI: 10.6084/m9.figshare.17701142.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 17
DOI: 10.6084/m9.figshare.6170945.v1
title: Sport Field Soil Compaction Dataset

description: Contains 8 soil compaction readings at different depth per position in a sports field.
DOI: 10.17632/vyywyym3zv
title: EMPA analyses of chlorite, biotite, hornblende, pyroxene, apatite, magnetite, rutile, ilmenite and titanite

description: Chemical compositions of chlorite, biotite, hornblende, pyroxene, apatite, magnetite, rutile, ilmenite and titanite
DOI: 10.17632/w8b9ph9srx
title: Retrograde bladder filling after laparoscopic gynecologic surgery

description: After outpatient gynecologic surgery, many patients take a long time to void their bladders, which is a common criteria they must meet prior to discharge from hospital. This delay is likely due to the fact that indwelling urinary catheters keep the bladder empty, which then takes time to refill and enable the patient to void. We theorized that retrofilling the bladder with fluid prior to completion of surgery would expedite patient's first void, and subsequently discharge from hospital. Gathered data: - Baseline demographics - operative characteristics - Operative time and intra-operative medications - Time to first void from arrival to post-anesthetic care unit (PACU) - Time of discharge from PACU - post-operative complications in the first post-operatrive week (by phone call questionnaire) All the mentioned data was collected on the day of surgery using data collection forms from the patient and the chart as needed. Electronic medical records were reviewed for any incomplete data elements.
DOI: 10.15468/dl.ak664j
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perityle jaliscana A.Gray ex S.Watson"
 ]
}

 The dataset includes 24 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009210-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24197985.v1
title: Data for Insights into the morphology, composition, and sources of atmospheric particulate matter on Mt. Qomolangma (Everest)

description: These files contain the data from the single particle sampling project on Mt. Qomalangma (Everest), comprising 52349 particles across 11 samples. They record the shape and composition data for each individual particle.
DOI: 10.6084/m9.figshare.5117800.v1
title: Appendix 1 from Estimating adult sex ratios in nature

description: R code to generate box panel 1: Comparison of ASR measures from raw counts of unmarked male and female individuals with estimates obtained with a detection-based abundance model.
DOI: 10.6084/m9.figshare.18415925.v3
title: Diversity of spatiotemporal coding reveals specialized visual processing streams in the mouse cortex

description: Here provides the datasets and code files for evaluating and re-producing results in Han et al., Nat Comm, 2022.
https://rdcu.be/cO33Q 
https://doi.org/10.1038/s41467-022-29656-z
<br>
Dataset-meta combines datasets 1-3 for multi-variant analysis of the tuning for spatiotemporal frequency and orientation.
<br>
These datasets include the calcium time courses, trial-averaged responses and tuning parameters of 89,377 L2/3 excitatory neurons in eight visual cortical areas in awake mice (Thy1-Gcamp6s, GP4.12).
<br>
Dataset 1 and 2 include neurons' responses to isotropic and anisotropic stimuli respectively, which were used for spatiotemporal tuning analysis.
Dataset 3 includes neurons' responses to stimuli of different spatial elongation, which were used for length/orientation tuning analysis.<br>

<br>
Timecourse_datasets contain the raw calcium time courses of cells, from which dataset1-3 were derived.<br>

<br>
Code file includes codes to (1) generate visual noise stimuli (2) parse the datasets and perform tuning analysis, clustering and tsne analysis.
<br>
DOI: 10.17632/sp282r3f37
title: Deletion of a pseudogene within a fragile site triggers the oncogenic expression of the mitotic CCSER1 gene

description: Paper published (10.26508/lsa.202101019)
DOI: 10.6084/m9.figshare.7857470.v1
title: Mus musculus CasX sites

description: This is an annotated list of potential CasX (Cas12e) editing sites based on Ensembl Release 95 for Mus musculus. The sites are annotated with location contig, start, end, target sequence, PAM sequence, uniqueness among editing sites, and overlaps with known exons.
DOI: 10.17632/zzzvwpzyvt
title: Voluntarily ingestion of a sedative prior to euthanasia with CO2 in mice

description: Our objective was to study if the voluntary ingestion of a sedative (tiletamine-zolazepam; Zoletil®) prior to euthanasia with CO2 reduces the aversiveness to this gas in female and male C57BL/6 mice. 
A total of 80 C57BL/6 mice (40 females, 40 males) were used in the study. Animals were housed in pairs of the same sex. The treatments differed in the dose of the sedative (tiletamine-zolazepam): Control (0 mg/kg), Z10 (10 mg/kg), Z20 (20 mg/kg), Z40 (40 mg/kg), Z80 (80 mg/kg), and Z100 (100 mg/kg).

The data file contains two tabs. In both tabs, Columns A to E include: 
Cage_number: there were 40 cages in total.
Sex: half of the cages were females and half males.
MouseID: there were two mice/cage and to differentiate between them one was marked.
Dosing Period: (1-5) A total of 5 dose escalation sessions were performed. At each dosage session, each treatment cage was randomly paired with a control cage containing mice of the same sex, resulting in a total of 16 mice from four male cages and four female cages per session.
Type_of_treatment: Control, Z10, Z20, Z40, Z80 and Z100. 

1) Pre-euthanasia Data Tab. Includes the behavioural data reported during 1200 s of observation after the voluntarily ingestion of the sedative and prior to euthanasia with CO2 (sedation period). Due to video loss for some mice, we standardised the behavioural reporting to the first 800 s of the sedation period. Under the column "Event_frequency" (Column K) are those behaviours coded as frequency (e.g., rearing and jumping), and under the column "Behaviour_duration" (Column L) are those behaviours coded as duration (e.g., walking on lid, ataxia). "CC In" and "CC Out" (Column I) indicates when the cream cheese +/- sedative was introduced and removed from the cage. "CC Out - End Obs" (Column J) is the total observation time. The duration for the behaviours or conditions appears under the column "Duration_Time" (00:00:00). The columns "Onset_Time"  (Column F) and "Offset Time" (Column G) indicate the time when the behaviour or condition started and ended, respectively.  

2) Euthanasia Data Tab. Includes the data about the voluntary intake of the cream cheese +/- sedative (Columns N to V); "z_dose" (Column U) is the planned tiletamine-zolazepam dose and "actual_z_dose" (Column V) is the real dose ingested. The behaviours recorded during the euthanasia with CO2 are also included (Columns F to K). Rearing (Column F) and jumping (Column G) were coded as frequency. The other behaviours were coded as durations (seconds). Under "Corrected_Latency_to_Ataxia" (Column H) appears the latency to ataxia from the onset of CO2 (seconds). The other latencies were coded from the previous behaviour as follows: "Latency to recumbency from ataxia" (Column I) "Latency to laboured breathing from recumbency" (Column J), and "Latency to last breath from laboured breathing" (Column K). The duration for which the CO2 was on is included in Column L.
DOI: 10.6084/m9.figshare.14399504.v1
title: mRNA and DNAm references for skin

description: The data contains a 652-marker expression reference and a 111-marker DNAm reference for Skin, which can be used to estimate cell type fractions of endothelial cells, fibroblasts, differentiated keratinocytes, undifferentiated keratinocytes, macrophages, melanocytes and T cells in Skin tissue with EpiSCORE framework.<br>Skin_Expref.csvA scRNAseq expression reference for Skin. Each row is a marker gene (in gene symbol) and each column is a cell type. For each marker gene, the value of the reference matrix is the median expression level for each type of cells in scRNAseq data.<br>Skin_Mref.csvA DNAm reference for Skin. Each row is a marker gene (in entrezID) and each column is a cell type. The last column is the weight for each marker. The value of the matrix is the imputed DNAm level from expression reference.
DOI: 10.17632/v487vwmd7r
title: Data for: A multi-parameter ultrasonic evaluation of mean grain size using optimization
DOI: 10.6084/m9.figshare.12581132.v1
title: Bacteria_raw_data

description: <b>Soil texture primarily affects diversity of bacteria, but organic carbon shapes community composition in paddy soils having different parent materials and fertility levels</b>
DOI: 10.17632/8pfjgrwtsr
title: T1_T2_brainstem_seg_Matlab_code

description: T1_T2_brainstem segmentation Matlab routines

The Matlab routines allow to segment internal brainstem structures from T1 and T2 weighted images. The routines are based on the method described in Hum Brain Mapp. 2020 Jun 1;41(8):2173-2186.  doi: 10.1002/hbm.24938. In short, the intensities of the T1 and T2 images are re-scaled and a T1/T2 ratio image (RATIO) calculated. The brainstem is isolated and k-means clustering used to identify five intensity clusters. Nonlinear diffeomorphic mapping as implemented in SPMs DARTEL can be used to warp the five intensity clusters in subject space into a common space to project specific generate probabilistic group averages/priors. Alternatively, it is possible to use the priors provided in this directory. The priors are used to inform the final probabilistic segmentations at the single subject level. The five clusters correspond to five brainstem tissue types (2 gray matter, 2 mixed gray/white,1 csf/tissue partial volume). Please see Word document for detailed step-by-step instructions. 


Contact of author

Susanne Mueller M.D.
Center for Imaging of Neurodegenerative Diseases
VAMC San Francisco
4150 Clement Street
San Francisco, CA, 94121
USA
e-mail: susanne.mueller@ucsf.edu


You need to have Matlab with the Image Processing, Statistics, Curve Fitting, and Optimization toolboxes and spm12 (https://www.fil.ion.ucl.ac.uk/spm/)

Make sure you have the T1_T2_brainstem_seg folder in you Matlab search path.

The Matlab routines are not for commercial use.

Disclaimer: Use of the Matlab routines at your own risk.
DOI: 10.6084/m9.figshare.28816010.v1
title: data.sav

description: The present study aimed to examine the relationship between depression and the use of conversational AI for companionship (UCAI-C) among college students and to investigated the mediating role of loneliness and the moderating roles of gender and mind perception.
DOI: 10.17632/m7k4gsffry
title: Amazon Rainforest Wildfires Rumor Detection

description: The data set contains information about the Amazon rainforest wildfires that took place in 2019. Twitter data has been collected between August 21, 2019 and September 27, 2019 based on the following hashtags: #PrayforAmazonas, #AmazonRainforest, and #AmazonFire.

The goal of this data set is to detect whether a tweet is identified as a rumor or not (given by the 'label' column). A tweet that is identified as a rumor is labeled as 1, and 0 otherwise. The tweets were labeled by two independent annotators using the following guidelines. Whether a tweet is a rumor or not depends on 3 important aspects:
(1) A rumor is a piece of information that is unverified or not confirmed by official instances. In other words, it does not matter whether the information turns out to be true or false in the future.
(2) More specifically, a tweet is a rumor if the information is unverified at the time of posting.
(3) For a tweet to be a rumor, it should contain an assertion, meaning the author of tweet commits to the truth of the message.

In sum, the annotators indicated that a tweet is a rumor if it consisted of an assertion giving information that is unverifiable at the time of posting. Practically, to check whether the information in a tweet was verified or confirmed by official instances at the moment of tweeting, the annotators used BBC News and Reuters. After all the tweets were labeled, the annotators re-iterated over the tweets they disagreed on to produce the final tweet label.

Besides the label indicating whether a tweet is a rumor or not (i.e., ‘label’), the data set contains the tweet itself (i.e., ‘full_text’), and additional metadata (e.g., ‘created_at’, ‘favorite_count’). In total, the data set contains 1,392 observations of which 184 (13%) are identified as rumors.

This data set can be used by researchers to make rumor detection models (i.e., statistical, machine learning and deep learning models) using both unstructured (i.e., textual) and structured data.
DOI: 10.17632/hpmzydbkyp
title: Liver-Specific Loss of Atg9a Perturbs Lipid Metabolism and Hepatocyte Integrity

description: Supplementary files from the manuscript by the same title.
DOI: 10.17632/3c4dz2dh5z
title: Data for: Development and analytical validation of a multiplex, real-time PCR assay for Babesia rossi and Babesia vogeli

description: Analytical validation
DOI: 10.17632/63p6hvbg5v
title: The Student Perspective on Social Entrepreneurship Careers

description: This data consist the students perspective on social entrepreneurship as a career option. the data consist a survey of 103 respondents.
DOI: 10.6084/m9.figshare.13670848.v1
title: Hda_full-length transcriptome.fasta

description: This is the fasta file of full-length transcriptome of Huso dauricus.
DOI: 10.17632/vtsrpysgjp
title: Evaluation of Safety and efficacy of dietary fiber supplementary combinationin patients with chronic metabolic disorders

description: Introduction: Intake of dietary fibre (DF) has beneficial effects on the risk factors responsible for development of several chronic diseases like IBS, obesity, colorectal cancer, type 2 diabetes and cardiovascular diseases. Hence this study was conducted with aim to evaluate the safety and efficacy of Fitofy, a soluble dietary supplement in various chronic metabolic disorders and chronic GIT disorders with or without other co-morbidities. Methodology: This prospective, observational, multicentric study was conducted for a period of one year from Jan 22 to Dec 22 including 120 patients. Results and discussion: Statistically significant improvement was seen in various efficacy parameters such asglycaemic control amongst diabetes mellitus patients and lipid profile in dyslipidaemia. Various efficacy parameters for obesity like weight, hunger level and waist circumference showed highly statistically significant fall from baseline. Significant reduction was observed in stool hardness and sensation of incomplete evacuation parameters in patients with constipation. Spontaneous defecation and bowel frequency per week also showed good improvement.Good to excellent safety was observed in 97.19 % of the patient. No adverse event was reported by physician in any patients, A view of good to excellent tolerability was opined by 84.30 % patients. Conclusion: The dietary fiber supplement combination (DFSC) of inulin, partially hydrolysed guar gum, and resistant maltodextrin with proper diet therapy/modifications is found to be safe and effective in causing significant improvements in efficacy parameters of various chronic metabolic disorders like type 2 DM, dyslipidaemia, overweight/obesity, and chronic GI disorders.