cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.u7bhyn
title: Occurrence Download

description: A dataset containing 1604 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (GBIF_WITHIN('POLYGON((31.43442 30.97419,32.95902 30.97419,32.95902 31.58342,31.43442 31.58342,31.43442 30.97419))', occurrence.decimallatitude, occurrence.decimallongitude) = TRUE OR occurrence.decimallatitude &gt;= 31.25729 AND occurrence.decimallatitude &lt;= 31.28476 AND (occurrence.decimallongitude &gt;= 32.21785 AND occurrence.decimallongitude &lt;= 32.23721) AND GBIF_WITHIN('POLYGON ((32.22422 31.28274, 32.22177 31.28411, 32.21898 31.28476, 32.21785 31.27429, 32.22037 31.26979, 32.21981 31.25815, 32.22177 31.25729, 32.22901 31.25892, 32.23721 31.26614, 32.23421 31.2769, 32.23378 31.27649, 32.22821 31.27612, 32.22422 31.28274))', occurrence.decimallatitude, occurrence.decimallongitude) = TRUE)
 AND occurrence.hascoordinate = TRUE
 AND occurrence.hasgeospatialissues = FALSE
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.taxonkey = 212 OR occurrence.acceptedtaxonkey = 212 OR occurrence.kingdomkey = 212 OR occurrence.phylumkey = 212 OR occurrence.classkey = 212 OR occurrence.orderkey = 212 OR occurrence.familykey = 212 OR occurrence.genuskey = 212 OR occurrence.specieskey = 212)
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 1604 records were derived from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012409-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25550/7x-bsem
title: Genomic and Developmental Mechanisms of SIX2-related Craniofacial Syndrome

description: In this project, we study genomic disruptions associated with frontonasal dysplasia (FND), a congenital craniofacial disorder that profoundly affects the structure and function of the orofacial complex, as a model for understanding genome organization and molecular mechanisms underlying craniofacial development and malformations. Several independent studies have associated FND with partly overlapping heterozygous microdeletions at Chromosome 2p21 in which SIX2 is the only protein-coding gene. SIX2 is a member of the SIX- and homeo-domain containing DNA-binding transcription factors. In all vertebrate genomes, Six2 is physically linked to Six3 in a tail-to-tail configuration, with these two genes organized into separate topologically associating domains (TADs) flanking a conserved TAD boundary. Whereas Six2+/- mice are phenotypically normal and Six2-/- mice exhibit kidney hypoplasia with normal frontonasal structures, our preliminary study found that deleting Six2 together with part of the Six2/Six3 intergenic region, but not including the Six3 gene or Six2 distal enhancers, caused midline facial clefting in heterozygous mice. On the other hand, mice carrying a heterozygous deletion including Six2, Six3, and their intergenic region in between, could survive with no frontonasal defects. We hypothesize that SIX2-related FND is caused by gain of SIX3 expression in developing frontonasal mesenchyme due to TAD boundary disruption and enhancer adoption rather than by SIX2 haploinsufficiency as previously believed. This project will test this novel hypothesis and unravel the genomic and molecular developmental mechanisms underlying SIX2-related FND. Data from these studies will provide novel insights into mechanisms of craniofacial development, and lead to improvements in molecular diagnosis, medical assessment and interpretation of clinical genomics data, and treatment of developmental disorders associated with genomic structural variations.
DOI: 10.5281/zenodo.10016026
title: Lung adenocarcinoma growth pattern annotations for H&E images

description: This repository contains the training data, H&E tiles and associated annotations, used for the model developed in the paper The Artificial Intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma publised in Nature Cancer, doi: 10.1038/s43018-023-00694-w, togerther with raw data for reproducing figure 5b.

Table. Interpretation of the digital label for the training data




label
RGB color
class


0
(0, 0, 0)
others, including non-tissue


1
(0, 255, 255)
cribriform


2
(255, 0, 255)
micropapillary


3
(128, 0, 0)
solid


4
(255, 255, 0)
papillary


5
(255, 0, 0)
acinar


6
(0, 0, 255)
lepidic




 



This dataset is available through Zenodo for academic non-commercial use only.

If you are a commercial entity wishing to access the dataset please email CTC.TRACERx ctc.tracerx@ucl.ac.uk and include in the subject heading 'Zenodo Data Access Request – [Lung adenocarcinoma growth pattern annotations for H&E images]'
DOI: 10.5281/zenodo.10016027
title: Lung adenocarcinoma growth pattern annotations for H&E images

description: This repository contains the training data, H&E tiles and associated annotations, used for the model developed in the paper The Artificial Intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma publised in Nature Cancer, doi: 10.1038/s43018-023-00694-w, togerther with raw data for reproducing figure 5b.

Table. Interpretation of the digital label for the training data




label
RGB color
class


0
(0, 0, 0)
others, including non-tissue


1
(0, 255, 255)
cribriform


2
(255, 0, 255)
micropapillary


3
(128, 0, 0)
solid


4
(255, 255, 0)
papillary


5
(255, 0, 0)
acinar


6
(0, 0, 255)
lepidic




 



This dataset is available through Zenodo for academic non-commercial use only.

If you are a commercial entity wishing to access the dataset please email CTC.TRACERx ctc.tracerx@ucl.ac.uk and include in the subject heading 'Zenodo Data Access Request – [Lung adenocarcinoma growth pattern annotations for H&E images]'
DOI: 10.15468/dl.4gtdbm
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Panthera tigris sumatrae Pocock, 1929"
 ]
}

 The dataset includes 152 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013266-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/rfxex-mgj40
title: VSVGpNL4GFP entry HUVECs

description: HUVECs 30 min post spinoculation with VSVGpNL4GFP
description: <strong>Tilt Series Date:</strong> 2011-08-12</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Proviral construct from Irvin Chen UCLA</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infected VSVG pNL4GFP by spinoculation</p>
<strong>Sample Preparation:</strong> manual blot</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-18/rawdata/</p>11aug12_batch_0014.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-18/rawdata/11aug12_batch_0014.st"
        > <i class="download icon"></i> Download </a></p>

        11aug12_batch_0014_full.rec,  Reconstruction (Pixel Size 2.0 nm), 627.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-12-18/3dimage_54230/11aug12_batch_0014_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/svea1-3tj22
title: Eco 041010 MP58

description: Escherichia coli, 10apr19a_042010_MP58_004,
description: <strong>Tilt Series Date:</strong> 2010-04-19</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 19.1 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-14/rawdata/</p>10apr19a_042010_MP58_004.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-14/rawdata/10apr19a_042010_MP58_004.mrc"
        > <i class="download icon"></i> Download </a></p>

        10apr19a_042010_MP58_004_full.rec,  Reconstruction (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-04-19-14/3dimage_14777/10apr19a_042010_MP58_004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/skrny-tgm52
title: Pdb 121509 MP35

description: Prosthecobacter debontii, 10feb07a_MP35_Pdb_exp_041, putative btub structure,
description: <strong>Tilt Series Date:</strong> 2010-02-07</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2010-02-07-12_slicer5995.jpg: btub mpa2010-02-07-12_slicer5996.jpg: Filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-12/rawdata/</p>10feb07a_MP35_Pdb_exp_041.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-12/rawdata/10feb07a_MP35_Pdb_exp_041.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb07a_MP35_Pdb_exp_041_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-12/3dimage_14533/10feb07a_MP35_Pdb_exp_041_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/bjvg6-ddw95
title: BsubtilisMJ007 spores

description: Bsubtilis MJ007 spores
description: <strong>Tilt Series Date:</strong> 2011-08-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-53/3dimage_24931/</p>mjspores20013_part.rec,  Reconstruction (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-53/3dimage_24931/mjspores20013_part.rec"
        > <i class="download icon"></i> Download </a></p>

        mjspores20013.mrc,  Tilt Series (Pixel Size 0.95 nm), 941.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-08-53/rawdata/mjspores20013.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/af0t8-2pc24
title: Ote 090409 MP22

description: Opitutus terrae, 09sep10b_090409MP22_031,
description: <strong>Tilt Series Date:</strong> 2009-09-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Opitutus terrae</p>
<strong>Strain:</strong> DSM 11246</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-09-10-64/rawdata/</p>09sep10b_090409MP22_031.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-09-10-64/rawdata/09sep10b_090409MP22_031.mrc"
        > <i class="download icon"></i> Download </a></p>

        09sep10b_090409MP22_031_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-09-10-64/3dimage_14129/09sep10b_090409MP22_031_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.jbb5xj
title: Occurrence Download

description: A dataset containing 1961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphanes arvensis",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1961 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045600-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5e13a-b9409
title: Bsubtilis349

description: Bsubtilis JFG349 (MJ007, SpoIIIE78-11-GFP)
description: <strong>Tilt Series Date:</strong> 2011-08-24</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> JFG349, ponA null, SpoIIIE73-11-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-24-1/3dimage_24933/</p>349target0001_full.rec,  Reconstruction (Pixel Size 1.9 nm), 792.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-24-1/3dimage_24933/349target0001_full.rec"
        > <i class="download icon"></i> Download </a></p>

        349target0001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-08-24-1/rawdata/349target0001.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.5wemhd
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphanes arvensis",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045599-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/j6ppg-5nn40
title: O. tauri @ G1/S

description: O. tauri cell synchronization .
description: <strong>Tilt Series Date:</strong> 2007-09-27</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-57.0°, 57.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Treated with HU for 12 hours, then incubated in fresh MK for</p>
<strong>Sample Preparation:</strong> Q-foil R3.5/1, BSA treated 10nm gold, 100% humidity, -2mm offset,</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-2/rawdata/</p>RCC745_HU_11PM_03.mrc,  Tilt Series (Pixel Size 1.59 nm), 654.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-2/rawdata/RCC745_HU_11PM_03.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_HU_11PM_03.rec,  Reconstruction (Pixel Size 3.18 nm), 187.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2007-09-27-2/3dimage_3224/RCC745_HU_11PM_03.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9cwvv-7yk59
title: B. subtilis 3267

description: Raw data files of B. subtilis 3267
description: <strong>Tilt Series Date:</strong> 2011-12-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-26/rawdata/</p>3267a0026.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-26/rawdata/3267a0026.mrc"
        > <i class="download icon"></i> Download </a></p>

        3267a0026_part.rec,  Reconstruction (Pixel Size 3.8 nm), 825.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-08-26/3dimage_16022/3267a0026_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.krbyen
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphanes arvensis",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045601-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.