cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.6p9v5/1
title: TraitDatDRYAD

description: Species list and mean trait values for each species x stage  included in the study
DOI: 10.5061/dryad.921k0/1
title: Drag coefficients of marine turtles and animal-borne instruments

description: Drag coefficients of marine turtles in turbulent flow at angle of attack = 0; and, of associated animal-borne instruments (Table 2 raw data). Frontal area (m^2) and straight carapace (cm) data pairs of dermochelyidae and cheloniidae (Table 2 raw data). Drag coefficients of marine turtles in turbulent flow at various angles of attack (-12 to 12 degrees) and at various wind velocities (m/s) when angle held at 0 (Figure 2A&B raw data).
DOI: 10.5061/dryad.9hf5c/1
title: Smilodon XY coordinates for GM

description: Raw digitized coordinates of Smilodon fatalis mandibles for geometric morphometric data analysis.
DOI: 10.5061/dryad.9hf5c/2
title: Temporalis angle measurements for Smilodon fatalis

description: Phi prime temporalis angle measurements taken from the coronoid process height on Smilodon fatalis mandibles.
DOI: 10.5061/dryad.9k19f/1
title: citb_pam_outgroup_haps.nex.con

description: consensus tree file from mrbayes phylogenetic analyses (BI)
DOI: 10.5061/dryad.9k19f/2
title: citb_pam_outgroup_haps_phy_phyml_tree

description: tree file from maximum likelihood analysis with bootstraps
DOI: 10.5061/dryad.9k19f/3
title: cmos_inferred_haplotypes

description: Nuclear haplotypes from C-mos gene fragment inferred using PHASE (see details in article)  and used for haplotype network construction
DOI: 10.5061/dryad.9k19f/4
title: mc1r_inferred_haplotypes

description: Nuclear haplotypes inferred using PHASE (see details in publication) for the MC1R dataset and used for haplotype network construction
DOI: 10.5061/dryad.c5310/1
title: Shapefiles for the Eastern Arc Mountains in Tanzania and Kenya

description: Forest and mountain extent for the 13 mountain blocs/ranges that comprise the Eastern Arc chain. Provided in WGS1984 and UTM zone 37S coordinate reference systems. For metadata, see the published article (open access) - mountain limits relate to version 9 in the SOM
DOI: 10.5061/dryad.gd077/1
title: How to smash a snail

description: Excel file containing force of initial failure data for three tooth model series (convex-concave, cusp - height, and cusp - width) for two snail shell morphologies (N ostrina and N lamellosa)
DOI: 10.5061/dryad.h065g/1
title: Supplemetary Figure 1

description: Supplementary Figure 1. Inferred LGT events between 13 bacterial classes. (a) LGT heatmap. The colour side bars indicate class. The row and column order is the same. The number of transfers is shown in a white-yellow-red colour scale with darker colours indicating a higher proportion of transfer events. Colour intensity is relative to the largest number of transfers in a row. Relationships with fewer than 5% of the maximum transfer events for a row or only a single transfer event were filtered out. (b) LGT affinity graph of the bacterial classes. Each node of the graph represents a bacterial class scaled relative to the number of represented taxa (2-75). Two genera are connected by an edge if the number of inferred LGT events between them exceeds 5% of their shared genes. The shade of an edge is proportional to this ratio of LGT events to shared genes; black edges indicate relationships with at least as many LGT events as shared genes. The thickness of an edge scales relative to the actual number of inferred transfers (30-1414) with thicker edges indicating more transfers.
DOI: 10.5061/dryad.hf591/1
title: Raw data

description: 2D PIV data, 3D kinematic data, 3D IVW coordinates
DOI: 10.5061/dryad.hf591/2
title: Sample video 1

description: Lepomis macrochirus capturing evasive prey (success), 33 frames, recorded at 500 fps
DOI: 10.5061/dryad.hf591/3
title: Sample video 2

description: Lepomis macrochirus capturing evasive prey (success), 33 frames, recorded at 500 fps
DOI: 10.5061/dryad.hf591/4
title: Sample smoothed points

description: Smoothed data from sample video: 1 Prey, 2 upper jaw, 3 lower jaw, 4 predator center of mass (digitized points)
DOI: 10.5061/dryad.j0p62/1
title: Polyplax_COI_Dyrad

description: MItochondrial Cytochrome Oxidase subunit 1 nexus alignment file for Polyplax arvicanthis
DOI: 10.5061/dryad.j0p62/2
title: Rhabdomys_COI_Dyrad

description: Mitochondrial Cytochrome Oxidase subunit 1 nexus alignment file for Rhabdomys
DOI: 10.5061/dryad.j0p62/3
title: Polyplax_CAD_Dyrad

description: Nuclear CAD rudimentary gene nexus alignment file for Polyplax arvicanthis
DOI: 10.5061/dryad.j0p62/4
title: Rhabdomys_Eef1a1_Dyrad

description: Nuclear Eukaryotic elongation factor 1 alpha 1 nexus alignment file for Rhabdomys
DOI: 10.5061/dryad.mk364/19
title: xml output file from Blast2GO for variable tags: Tursiops hits
DOI: 10.5061/dryad.mk364/20
title: Blast2GO result (blastn) for conserved tags: Evalues
DOI: 10.5061/dryad.mk364/21
title: Blast2GO result (blastn) for variable tags: Evalues
DOI: 10.5061/dryad.mk364/22
title: Blast2GO result (blastn) for conserved tags: Similarity values
DOI: 10.5061/dryad.mk364/23
title: Blast2GO result (blastn) for variable tags: Similarity values
DOI: 10.5061/dryad.n8n6k/1
title: Marino et al. genotypes

description: Microsatellite genotypes used in the paper. Full description reported in the ReadMe file.
DOI: 10.5061/dryad.nd3vs/1
title: Main data used in the paper, a half-sib pedigree where a number of traits are measured

description: First five columns represent the structure of the half-sib design and the rest are traits. Size (mm), Mb (mass in grams), Bdehy (dehydration rate in grams),	mb_growth (growth rate in grams/day), log10_smr	(log of standard metabolic rate), residual_SMR	 (residuals of mass, of standard metabolic rate),     Digestivilidad (dry matter digestibility), Mbegg (mass of the egg),MbHatch (mass of the hatchling).
DOI: 10.5061/dryad.pc54g/1
title: Social contact data in humans
DOI: 10.5061/dryad.pq873/4
title: LDA scaling function values

description: Functions of the linear discriminant analysis (DA) calculated from the normalized CHC data on the Nasonia samples, first three functions plotted simultaneously in Figure 1 in the paper, further details on the DA see Materials and Methods and Results, respectively.
DOI: 10.5061/dryad.pq873/5
title: Phylogenetic distance matrix

description: Phylogenetic distance matrix, used in comparison with the average manhattan chemical distances between the Nasonia species based on the relative differences between their normalized CHC peak areas, performed separately for males and females (Fig. 2 and 3, respectively). The molecular distances are based on the Nasonia phylogeny, which are themselves based on the genetic divergence of a mitochondrial gene, COI sequences retrieved from NCBI, pairwise p-distances calculated with MEGA 3.0 (Werren et al., 2010) For further information, please see Materials and Methods section in the paper as well as the Tables S2 and S3, which give the average manhattan distances the phylogenetic distances were compared to.
DOI: 10.5061/dryad.pq873/6
title: Replicated Mantel tests

description: Single results of the Mantel tests, performed five times for both male CHC divergence vs. Nasonia phylogeny and female CHC divergence versus Nasonia phylogeny, all five p values and their respective averages are given for both combinations, as well as the r value. Each single test was performed with 9999 permutations.
DOI: 10.5061/dryad.pq873/7
title: Behavioral assays

description: Raw data on the behavioral assays, focussing on N. oneida and N. giraulti males (Fig. 4). Whether a copulation has occurred or not is given in the second column for each pairing in a binary coding (1 = yes, 0 = no), and the average number of occurred copulations is given for each pairing with untreated and treated female dummies. Species affiliation and treatment of female dummies indicated in the caption of each pairing. Male species affiliation can be found in the main caption on each spread sheet. Furthermore, the male arrestment time has been recorded (third column), but those data have not been used in this study. Mating results on two further N. giraulti strains are given as well.
DOI: 10.5061/dryad.pq873/8
title: Distribution of CHC compounds

description: Relative (percentages) distribution of CHC compound classes among the species and sexes of Nasonia and the outgroup Trichomalopsis, data underlying Fig. S2.
DOI: 10.5061/dryad.qm636/1
title: Alignment of 28S rRNA gene sequences

description: The 28S rRNA gene sequences of Romanian niphargids obtained in the course of this study were aligned with other niphargid 28S sequences present in GenBank. Some individuals had more than one sequence type, hence the suffixes a, b and c appended to their names. Sequences were aligned using MAFFT's E-INS-i option.
DOI: 10.5061/dryad.r8bj6/1
title: Tested birds

description: Birds were sampled in the wild in four biogeographic regions (Region): NWA - Northwest Africa, NWI - Northwest Iberia, TRC - Transcaucasia, WGC - Western Greater Caucasus.  Bird ID is the unique identifier for each bird sampled. Repeated bird IDs indicate multiple infections in the same bird.  Date is when the sample was taken in the field.  Parasite lineage is a unique identifier and 'none' indicates that no haemosporidian parasite lineages were found.  Please see the original article for details of methods.
DOI: 10.5061/dryad.r8bj6/2
title: Haemosporidian lineages FASTA

description: The data file is a FASTA alignment of unique haemosporidian lineages identified in the bird samples.  The name of each lineage corresponds to the parasite lineage identifier used in the manuscript and associated files.  Lineages are identified to genus when species identification was not possible.
DOI: 10.5061/dryad.rc515/2
title: A/H3N2 HI data

description: Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal A/H3N2 influenza viruses and ferret antisera isolated between 1968 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
DOI: 10.5061/dryad.rc515/3
title: B/Victoria HI data

description: Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal B/Victoria influenza viruses and ferret antisera isolated between 1986 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
DOI: 10.5061/dryad.rc515/4
title: B/Yamagata HI data

description: Tab-delimited text file giving hemagglutination inhibition (HI) titers for seasonal B/Yamagata influenza viruses and ferret antisera isolated between 1987 and 2011. The virus strain used in the HI assay as well as the specific virus isolate are listed. The strain used as antiserum and the specific antiserum isolate are also listed. Data was compiled from multiple sources, listed in the sources column and fully referenced in the publication.
DOI: 10.5061/dryad.rc515/5
title: A/H1N1 sequence data

description: Tab-delimited text file giving sequence accession numbers for seasonal A/H1N1 influenza viruses isolated between 1977 and 2009. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
DOI: 10.5061/dryad.rc515/6
title: A/H3N2 sequence data

description: Tab-delimited text file giving sequence accession numbers for seasonal A/H3N2 influenza viruses isolated between 1968 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
DOI: 10.5061/dryad.rc515/7
title: B/Victoria sequence data

description: Tab-delimited text file giving sequence accession numbers for seasonal B/Victoria influenza viruses isolated between 1986 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
DOI: 10.5061/dryad.rc515/8
title: B/Yamagata sequence data

description: Tab-delimited text file giving sequence accession numbers for seasonal B/Yamagata influenza viruses isolated between 1987 and 2011. Sequences come from both the Influenza Research Database (http://www.fludb.org/) and the EpiFlu Database that is part of GISAID (http://www.gisaid.org/).
DOI: 10.5061/dryad.rc5tb/1
title: Database

description: Sqlite database containing most information.
DOI: 10.5061/dryad.rc5tb/2
title: NewHybrids

description: Input files for NewHybrids
DOI: 10.5061/dryad.rm8jf564/10
title: Brassicaceae-matK_Wang-etal-2011
DOI: 10.5061/dryad.rm8jf564/11
title: Fabaceae_ITS_Edwards-etal-2008
DOI: 10.5061/dryad.rm8jf564/12
title: Fabaceae_TrnT-trnL_Edwards-etal-2008
DOI: 10.5061/dryad.rm8jf564/13
title: Malvaceae_ITS-Roy-etal-2010
DOI: 10.5061/dryad.rm8jf564/14
title: Malvaceae_trnH-psbA-Roy-etal-2010
DOI: 10.5061/dryad.rm8jf564/15
title: Meliaceae_ITS_Muellner-etal_2011
DOI: 10.5061/dryad.rm8jf564/7
title: Betulaceae_ITS_Ren-etal-2010
DOI: 10.5061/dryad.rm8jf564/8
title: Betulaceae_TrnH-psbA_Ren-etal-2010
DOI: 10.5061/dryad.rm8jf564/9
title: Brassicaceae-ITS_Wang-etal-2011
DOI: 10.5061/dryad.v2n81/1
title: Data matrix

description: Data matrix for the phylegenetic analysis in the manuscript
DOI: 10.5061/dryad.258h4/5
title: Cline_data

description: Summary file of cline data
DOI: 10.5061/dryad.2gj70/1
title: field sampling data

description: This file includes the field sampling data of Linaria dalmatica, its biological control agent Mecinus janthiniformis, and resident plant community cover and environmental data at 38 sites in Idaho USA from 2007 to 2011.
DOI: 10.5061/dryad.2gt86/1
title: Microsatellite data in 6 wild giant panda populations

description: Collected from six mountain ranges
DOI: 10.5061/dryad.382p0/1
title: Com_ETSITS_APPS2013_MUSCLE

description: Sequence alignment produced by MUSCLE v.3.7 used for concatenated phylogenetic analysis of ETS and ITS markers.
DOI: 10.5061/dryad.382p0/2
title: Com_RPT6AIntron_APPS2013_MUSCLE

description: Multiple sequence alignment produced from MUSCLE v.3.7 used for phylogenetic analysis of the RPT6A Intron.
DOI: 10.5061/dryad.382p0/3
title: Com_BXL2Intron_APPS2013_MUSCLE

description: Multiple sequence alignment produced by MUSCLE v.3.7 for phylogenetic analysis of BXL2 Intron sequences.
DOI: 10.5061/dryad.382p0/4
title: Com_mtATPSynthDIntron_APPS2013_MUSCLE

description: Multiple sequence alignment produced by MUSCLE v.3.7 for phylogenetic analysis of the mtATPSynthase D Intron.
DOI: 10.5061/dryad.382p0/5
title: Com_RAB6Intron_APPS2013_MUSCLE

description: Multiple sequence alignment produced by MUSCLE v.3.7 for phylogenetic analysis of the RAB6 Intron.
DOI: 10.5061/dryad.46n9h/1
title: DorsalHindwingSpotNumber131024R1

description: Number of dorsal hindwing spots for butterflies used to determine sexual dimorphism in dorsal hindwing spot number, and developmental temperature dependence of female dorsal hindwing spots.
DOI: 10.5061/dryad.4qk81/1
title: Miller et al VCF SNP genotypes
DOI: 10.5061/dryad.4qk81/2
title: Miller et al BAM File

description: Sequence alignments (one .bam file per individual) of Illumnia reads to the domestic sheep genome.
DOI: 10.5061/dryad.4qk81/3
title: Miller et al Raw Read

description: Sequence files (one per individual) in .fastq format.
DOI: 10.5061/dryad.4qk81/4
title: Miller et al VCF SNPs

description: RAD Loci and genotypes for 8 bighorn sheep
DOI: 10.5061/dryad.6300n/7
title: m125M2_mincov015noref
DOI: 10.5061/dryad.6300n/8
title: m125M2_mincov001.vcf
DOI: 10.5061/dryad.6575f/1
title: Appendix_A_Simple_data

description: Simulated data to be used with tutorials in Appendix A.
DOI: 10.5061/dryad.6575f/2
title: Tree_data

description: Data to be used with tutorials in Appendix D.
DOI: 10.5061/dryad.6575f/3
title: cleanedClarkClark

description: Data to be used with tutorials in Appendix E.
DOI: 10.5061/dryad.6575f/4
title: ActaeaRegDat

description: Simulated data to be used with tutorials in Appendix F.
DOI: 10.5061/dryad.687q0/2
title: Supplemental Data 3

description: Measurements of material studied. Abbreviations: *=holotype; ●=figured; ∆=drawn; +=sectioned; ◊=SEM.
DOI: 10.5061/dryad.6j13r/1
title: Supplemental Data 1

description: Table giving key references for endocranial descriptions of Paleozoic jawed fishes. Regional divisions of the stratigraphic record given as age estimates in individual descriptions have been replaced with global equivalents where possible following Gradstein et al. (2012).
DOI: 10.5061/dryad.6j13r/2
title: Supplemental Data 2

description: Workflow of segmentation method described for Avizo.
DOI: 10.5061/dryad.6j13r/3
title: Supplemental Data 3

description: Animation of the endocast of Mimipiscis toombsi NHMUK PV P.53247.
DOI: 10.5061/dryad.6j13r/4
title: Supplemental Data 4

description: Animation of the endocast of Kentuckia deani MCZ 8361.
DOI: 10.5061/dryad.6j13r/5
title: Supplemental Data 5

description: PLY 3D file of the endocast of Mimipiscis toombsi NHMUK PV P.53247.
DOI: 10.5061/dryad.6j13r/6
title: Supplemental Data 6

description: PLY 3D file of the endocast of of Kentuckia deani MCZ 8361.
DOI: 10.5061/dryad.6mg14v2q/2
title: Table 2

description: Systematic list of described caddisflies collected in 12 stations of the Black Sea Basin in Kosovo with UV light traps from 2009-2010. Species new to the fauna of Kosovo are indicated by an asterisk *.
DOI: 10.5061/dryad.6qd10/1
title: F_selysi_microsatellite

description: Formica selysi microsatellite genotypes from individuals collected across a 10-year time span in the Bois de Finges reserve between Sierre and Susten in Valais, Switzerland.
DOI: 10.5061/dryad.82t1k/1
title: Data-deposit-file_22-10-13

description: This file provides raw data derived from 3 experiments in which either male frogs, or frog-eating bats were exposed to playback of the frog's mating call, with and without coupling to ripples that are incidentally produced by frogs that call from the water.
DOI: 10.5061/dryad.85p80/2
title: supplementary_materials

description: Combined zip archive of supplementary materials.
DOI: 10.5061/dryad.87d8s/1
title: Supplementary_Information
DOI: 10.5061/dryad.87d8s/2
title: Table_S2
DOI: 10.5061/dryad.8d820/1
title: Plastid DNA sequences of Saxifraga oppositifolia s.l.

description: Combined alignment of plastid DNA sequences (psbA-trnH, trnT-trnF) of Saxifraga oppositifolia s.l. The alignment was created using BioEdit. First column: individual name containing population number and taxon abbreviation (aug = S. retusa subsp. augustana, bif = S. biflora subsp. biflora, ble = S. oppositifolia subsp. blepharophylla, opp = S. oppositifolia subsp. oppositifolia, par = S. oppositifolia subsp. paradoxa, rud = S. oppositifolia subsp. rudolphiana, ret = S. retusa subsp. retusa, spe = S. oppositifolia subsp. speciosa), second column: aligned sequences.
DOI: 10.5061/dryad.8d820/2
title: AFLP matrix of Saxifraga oppositifolia s.l.

description: Manually scored AFLP matrix of Saxifraga oppositifolia s.l. using DAx (Van Mierlo Software Consultancy, Eindhoven) with non-reproducible and homogeneous fragments removed. AFLP data were generated following the procedure of Vos et al. (1995) with the modifications described by Schönswetter et al. (2009) using three primer combinations for selective PCR (fluorescent dyes in brackets) EcoRI (6-FAM)-ACA/MseI-CAC, EcoRI (VIC)-AGG/MseI-CTC, EcoRI (NED)-ACC/MseI-CAG. First column: individual name containing population number and taxon abbreviation (aug = S. retusa subsp. augustana, bif = S. biflora subsp. biflora, ble = S. oppositifolia subsp. blepharophylla, opp = S. oppositifolia subsp. oppositifolia, par = S. oppositifolia subsp. paradoxa, rud = S. oppositifolia subsp. rudolphiana, ret = S. retusa subsp. retusa, spe = S. oppositifolia subsp. speciosa), other columns: 0/1 matrix.
DOI: 10.5061/dryad.90525/1
title: RNA stem alignment (125 sequences)

description: This alignment is a concatenation of rRNA stem sites from small and large rRNA subunits. It contains 125 sequences and is in Fasta format.
DOI: 10.5061/dryad.90525/2
title: Universal protein alignment (38 sequences)

description: This universal protein alignment is a concatenation of 56 proteins from 38 species.
DOI: 10.5061/dryad.93p7f/1
title: eupolypodsII_character_matrix

description: Includes 79 discrete morphological characters scored for 81 taxa and one tree file depicting relationships of eupolypod II ferns
DOI: 10.5061/dryad.9fq7q/1
title: Caramaschi_et_al_2013_Allophryne_relicta

description: The compressed file contains the TNT file containing the matrix used for phylogenetic analyses and two fasta files containing the alignments, used to produce the matrix. The source data are fragments of the 12S and 16S ribosomal genes.
DOI: 10.5061/dryad.bk90m/1
title: Genotyping data using molecular markers

description: This file contains the genotype data generated using microsatellite markers, sequence-tagged site markers (STS), and single-strand conformational polymorphism (SSCP) markers.
DOI: 10.5061/dryad.cg10d/1
title: Fountain et al. 2014 genotypes

description: Microsatellite genotypes presented in Cervus input format for markers used in study. Divided into within infestation genotypes and within city genotypes as referred to in text. Populations correspond to those within manuscript.
DOI: 10.5061/dryad.dg237/1
title: assembled transcript sequences

description: Final contigs from the assembly, minimum 100 bp. The names correspond to the specific transcript builds, where  contig_id is the contig identifier, for example, avdl_parai-20111027|1234. Possibly includes UTRs. Sequences contain IUPAC ambiguity codes representing ambiguous bases (http://www.bioinformatics.org/sms/iupac.html).
DOI: 10.5061/dryad.dg237/2
title: predicted protein sequences

description: Protein products predicted by ESTScan, minimum 30 aa. Sequence identifiers for these predicted products correspond to the associated nucleotide sequence in file assembled transcript sequences.txt, and are provided suffixes _0, _1, etc., to accommodate multiple predictions.
DOI: 10.5061/dryad.h43q8/1
title: Buccinifera_concatenated_MUSCLE_final_MrBayes

description: Concatenated dataset for three chloroplast markers aligned separately using MUSCLE on the CIPRES portal.  Has nexus block for MrBayes analysis as presented in the manuscript.  The datafile should execute as is.
DOI: 10.5061/dryad.h85k0/1
title: Data file

description: The checklist responses for each trial alongside an indication of whether a problem with the description of the intervention was reported prior to publication
DOI: 10.5061/dryad.jg05d/1
title: Female competition in chimpanzees

description: UTM coordinates of the locations of chimpanzees of the Kasekela community in Gombe National Park, Tanzania, 2000-2003