cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7615873
title: Increasing lexical engagement with motor-enhanced pictures: An online study using the Picture-Word Interference paradigm

description: data, training materials & code
DOI: 10.6084/m9.figshare.22041206
title: ProjecTILs human reference atlas of tumor-infiltrating and blood Dendritic Cells (DC), LIGHT version

description: ProjecTILs human reference atlas of blood and tumor-infiltrating Dendritic Cells (DC), generated by semi-supervised STACAS integration of 11 scRNA-seq datasets spanning 5 cancer types. The datasets were obtained from Gerhard et al. JEM, 2020, as well as Villani et al. Science, 2017, for the blood samples. <br> The dataset is available as a Seurat object, with subtype labels (functional.cluster), sample of origin and several other measurement for each cell stored in the object metadata. The object can be directly used as a reference atlas for ProjecTILs (Andreatta et al. Nat Comms 2021). <br> NOTE: this is a light version of https://doi.org/10.6084/m9.figshare.22041191.v1 - downsampled to max 2000 cells per subtype
DOI: 10.25666/dataubfc-2020-01-09-03
title: Pollen analysis - Rochefort (Suisse, Neuchâtel), Cotencher Cave
title: Analyse pollinique - Rochefort (Suisse, Neuchâtel), Grotte de Cotencher

description: 10 palynological samples taken from lower levels (older than 72,000 years). Partly sterile or very corrosive. Interesting presence of hornbeam (Carpinus) mixed with steppics in a sample.
description: 10 échantillons prélevés dans les niveaux inférieurs (plus anciens que 72 000 ans). En partie stériles ou très marqués par la corrosion. Intéressante présence de charme (Carpinus) mélangé à des steppiques dans un échantillon.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Experimental data: Echantillons prélevés lors des fouilles archéologiques. Préparation physico-chimique à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2019-12-10-03
title: Pollen analysis - Trizac (F-15), Tronque peat bog
title: Analyse pollinique - Trizac (F-15), tourbière de Tronque

description: Natural site: peat bog. 16 palynological samples in 2019. 3 radiocarbon datings. Palynological tests positive. The last six millennia. Worth re-analyzing with a tighter sampling step and new dates.
description: Site naturel : tourbière. 16 échantillons lus en 2019. 3 datations 14C. Tests palynologiques positifs. Six derniers millénaires. Mérite une nouvelle analyse avec un échantillonnage plus serré et de nouvelles dates.
description: Audience: Research
description: UpdatePeriodicity: no update
description: Observational data: Echantillons prélevés par forage, sonde russe (type GIK). Préparation physico-chimique, méthode à la liqueur lourde. Détermination et comptage des spores et des pollens au microscope.
DOI: 10.25666/dataubfc-2017-12-05-03
title: Pollen analyses - Alba-la-Romaine (F-07), La Grande Terre
title: Analyses polliniques - Alba-la-Romaine (F-07), La Grande Terre

description: Pollen analyses conducted in 2015 from 23 soil samples recovered in 2015 at La Grande Terre, Alba-la-Romaine.
description: Analyses polliniques effectuées en 2015 sur 23 échantillons de sols prélevés en 2015 au lieu-dit la Grande Terre, Alba-la-Romaine.
description: Audience: Research
description: UpdatePeriodicity: monthly
description: Observational data: Identification et comptage des pollen et autres micro-fossiles au microscope optique après acétolyse, avec le logiciel PolyCounter.
DOI: 10.25666/dataubfc-2017-12-05-04
title: Pollen analyses and vegetation relevés - Saint-Point (F-25)
title: Analyses polliniques et relevés de végétation - Saint-Point (F-25)

description: Pollen analyses conducted in 2009 and 2010 from 18 moss and 15 dung samples recovered in 2009 at 18 different locations around the Saint-Point and Remoray Lakes. Also, vegetation relevés from the 18 locations.
description: Analyses polliniques effectuées de 2009 à 2010 sur 18 échantillons de mousses et 15 échantillons de bouse, collectés en 2009 à 18 emplacements répartis autour des lacs Saint-Point et Remoray. Ainsi que les relevés de végétations des 18 emplacements.
description: Audience: Research
description: UpdatePeriodicity: monthly
description: Observational data: Identification et comptage des pollen et autres micro-fossiles au microscope optique après acétolyse. Identification des espèces de plantes sur le terrain et relevé de leur pourcentage de recouvrement.
DOI: 10.34740/kaggle/dsv/4960944
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.21923175
title: fNIRS Recording of Prefrontal Cortex during Turkish Relative Clause Processing

description: The hemodynamic activity of fourteen subjects was collected via a 22-channel fNIRS system with a sampling rate of 7.8125 Hz while the subjects were performing a relative clause processing task in Turkish. The total stimuli consisted of 24 sentence-and-question pairs. Half of the sentences contained a subject-relative clause, while the other half contained an object-relative clause. The sentences were shown on a screen for 4 seconds, followed by the presentation of a Yes/No question about the sentence for 3 seconds, during which the subjects must respond via key press. The experiment was prepared in Pychopy 3.0.6 and key responses were also collected via Psychopy There was a random inter-stimulus interval within the range of 7-10 seconds. The fNIRS data provided were not preprocessed. The original output of the recording system was '.nirs', but the data were converted, without any preprocessing, into '.SNIRF', which is currently suggested as the standard data format by the fNIRS society. The recording (i.e., raw data) of one subject (Subject #6) was damaged, therefore excluded from the dataset. Furthermore, we provided one '.xlsx' file for each of the following data: response accuracy, reaction time, stimuli condition, and event timestamps. Further explanation of each file can be found In README files.
DOI: 10.5281/zenodo.7615827
title: NeuroCellCentreDB

description: The NeuroCellCentreDB was collected in an attempt towards automation of manual labelling work for the analysis of migration patterns, displayed by neuron-like cells. This release of the dataset contains 293 microscopy images with a total of 14193 cell centre annotations of neuronal neuroblast rat cells under the influence of surface acoustic waves (SAWs). The data is split into a recording sequence-independent train, validation, and test partition, structured by recording day and chip identifier. Images are provided in a TIF and labels in a JSON format.
DOI: 10.5281/zenodo.7615826
title: NeuroCellCentreDB

description: The NeuroCellCentreDB was collected in an attempt towards automation of manual labelling work for the analysis of migration patterns, displayed by neuron-like cells. This release of the dataset contains 293 microscopy images with a total of 14193 cell centre annotations of neuronal neuroblast rat cells under the influence of surface acoustic waves (SAWs). The data is split into a recording sequence-independent train, validation, and test partition, structured by recording day and chip identifier. Images are provided in a TIF and labels in a JSON format.
DOI: 10.34740/kaggle/dsv/4960960
title: Soyabean Disease Dataset
DOI: 10.34740/kaggle/dsv/4960964
title: Soyabean Disease Dataset
DOI: 10.21954/ou.rd.21995960
title: Question Generation Shared Task and Evaluation Campaign 2010 - Task B - QG from single sentences

description: A corpus of over 1000 questions (both human and machine generated). The automatically generated questions have been rated by several raters according to five criteria (relevance, question type, syntactic correctness and fluency, ambiguity, and variety). <br> The 1st Question Generation Shared Task & Evaluation Challenge took place in 2010 as part of the Third Workshop on Question Generation (http://www.questiongeneration.org/QG2010/). The aim of the challenge was to advance research on Question Generation (QG). The challenge consisted of two tasks: (A) Generation of Questions from Paragraphs, and (B) Generation of Questions from Single Sentences. <br> This dataset consists of the data from Task B: Generation from Sentences. <br> Systems that took part in this task were required to generate questions from single sentences. The participating teams were provided with an initial development data set (DevelopmentData_QuestionsFromSentences.xml) indicative of test data (TestData_QuestionsFromSentences.xml). <br> Both development and test data are in XML format. For the test data, the XML schema consisted of a root 'dataset' element with a child element called 'instance' for each test instance. The 'text' element contained the input to the QG system and the 'targetQuestionType' element specified the question type to be generated. Participant's submissions (anonymised as a, b, c, and d) are in the 'submission' element with the corresponding ratings for the quality of the generated questions (with multiple raters). The criteria associated with the ratings are described in InstructionsParticipants_QGfromSentences.pdf and in the associated conference proceedings paper available at http://oro.open.ac.uk/22345/.. <br> Also included in this folder is the XSLT file used to translate the ratings into a table (evaluation.xsl). The table was exported to MS Excel to calculate various results. There is a spreadsheet (TestDataSummary.xls) which provides a view on the test data and results.
DOI: 10.21954/ou.rd.21995960.v1
title: Question Generation Shared Task and Evaluation Campaign 2010 - Task B - QG from single sentences

description: A corpus of over 1000 questions (both human and machine generated). The automatically generated questions have been rated by several raters according to five criteria (relevance, question type, syntactic correctness and fluency, ambiguity, and variety). <br> The 1st Question Generation Shared Task & Evaluation Challenge took place in 2010 as part of the Third Workshop on Question Generation (http://www.questiongeneration.org/QG2010/). The aim of the challenge was to advance research on Question Generation (QG). The challenge consisted of two tasks: (A) Generation of Questions from Paragraphs, and (B) Generation of Questions from Single Sentences. <br> This dataset consists of the data from Task B: Generation from Sentences. <br> Systems that took part in this task were required to generate questions from single sentences. The participating teams were provided with an initial development data set (DevelopmentData_QuestionsFromSentences.xml) indicative of test data (TestData_QuestionsFromSentences.xml). <br> Both development and test data are in XML format. For the test data, the XML schema consisted of a root 'dataset' element with a child element called 'instance' for each test instance. The 'text' element contained the input to the QG system and the 'targetQuestionType' element specified the question type to be generated. Participant's submissions (anonymised as a, b, c, and d) are in the 'submission' element with the corresponding ratings for the quality of the generated questions (with multiple raters). The criteria associated with the ratings are described in InstructionsParticipants_QGfromSentences.pdf and in the associated conference proceedings paper available at http://oro.open.ac.uk/22345/.. <br> Also included in this folder is the XSLT file used to translate the ratings into a table (evaluation.xsl). The table was exported to MS Excel to calculate various results. There is a spreadsheet (TestDataSummary.xls) which provides a view on the test data and results.
DOI: 10.34740/kaggle/dsv/4960965
title: Soyabean Disease Dataset
DOI: 10.34740/kaggle/dsv/4960967
title: Soyabean Disease Dataset
DOI: 10.6084/m9.figshare.11687169.v2
title: Metadata record for: Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology

description: This dataset contains key characteristics about the data described in the Data Descriptor Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br> <br>
DOI: 10.6084/m9.figshare.11687169.v1
title: Metadata record for: Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology

description: This dataset contains key characteristics about the data described in the Data Descriptor Chronicles of nature calendar, a long-term and large-scale multitaxon database on phenology. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.11687118
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- South-East Asia WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 8 domestic sheep individuals originary from South East Asia. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11687118.v1
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- South-East Asia WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 8 domestic sheep individuals originary from South East Asia. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11687064.v1
title: Example Dataset for BIDS Manager

description: This folder contains data from a fictional participants that you can use to test BIDS Manager (https://github.com/Dynamap/BIDS_Manager).
DOI: 10.6084/m9.figshare.11687046.v1
title: Endothelial autophagy deficiency induces IL6 - dependent endothelial mesenchymal transition and organ fibrosis

description: Macroautophagy/autophagy plays a vital role in the homeostasis of diverse cell types. Vascular endothelial cells contribute to vascular health and play a unique role in vascular biology. Here, we demonstrated that autophagy defects in endothelial cells induced IL6 (interleukin 6)-dependent endothelial-to-mesenchymal transition (EndMT) and organ fibrosis with metabolic defects in mice. Inhibition of autophagy, either by a specific inhibitor or small interfering RNA (siRNA) for <i>ATG5</i> (autophagy related 5), in human microvascular endothelial cells (HMVECs) induced EndMT. The IL6 level was significantly higher in <i>ATG5</i> siRNA-transfected HMVECs culture medium compared with the control HMVECs culture medium, and neutralization of IL6 by a specific antibody completely inhibited EndMT in <i>ATG5</i> siRNA-transfected HMVECs. Similar to the <i>in vitro</i> data, endothelial-specific <i>atg5</i> knockout mice (Atg5 Endo; <i>Cdh5-Cre Atg5 </i>flox/flox mice) displayed both EndMT-associated kidney and heart fibrosis when compared to littermate controls. The plasma level of IL6 was higher in Atg5 Endo compared to that of control mice, and fibrosis was accelerated in Atg5 Endo treated with a HFD; neutralization of IL6 by a specific antibody inhibited EndMT and fibrosis in HFD-fed Atg5 Endo associated with the amelioration of metabolic defects. These results revealed the essential role of autophagy in endothelial cell integrity and revealed that the disruption of endothelial autophagy could lead to significant pathological IL6-dependent EndMT and organ fibrosis. <b>Abbreviations</b>: 3-MA: 3-methyladenine; ATG5: autophagy related 5; EndMT: endothelial-to-mesenchymal transition; HES: hematoxylin and eosin stain; HFD: high-fat diet; HMVECs: human microvascular endothelial cells; IFNG: interferon gamma; IL6: interleukin 6; MTS: Masson’s trichrome staining; NFD: normal-fat diet; siRNA: small interfering RNA; SMAD3: SMAD family member 3; TGFB: transforming growth factor β; TNF: tumor necrosis factor; VEGFA: vascular endothelial growth factor A
DOI: 10.6084/m9.figshare.11686962
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- Africa WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 10 domestic sheep individuals originary from the north of Africa. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11686962.v1
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- Africa WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 10 domestic sheep individuals originary from the north of Africa. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11686953
title: Proteome database of Bacillus pumilus strain SAFR-032

description: Spore-forming, the Gram-positive <i>Bacillus pumilus</i> is an aerobic bacterium that commonly lives in the soil. Given its resistance to a variety of environmental stressors, <i>B. pumilus</i> spores are also a known cause of food poisoning. This work sought to provide basic information on the proteome of <i>B. pumilus </i>SAFR-032 through the parsing of its UniProt proteome file with an in-house MATLAB proteome analysis software. Specifically, the resulting proteome database of the organism comprises protein name, amino acid sequence, number of residues of protein, molecular weight, and nucleotide sequence of protein. Overall, the proteome data provided should inform the design of experiments to better understand the pathogenic mechanisms of <i>B. pumilus</i> as well as factors that influence on sporulation in this hardy bacterium. <br><br>
DOI: 10.6084/m9.figshare.11686809
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- Europe WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 12 domestic sheep individuals originary from West Asia. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11686809.v1
title: Comparing the diversity of the casein genes in the Asian mouflon and domestic sheep- Europe WGS SNP

description: Dataset of SNPs identified in the whole genome sequences of 12 domestic sheep individuals originary from West Asia. Sequences were retrieved from NCBI database.
DOI: 10.6084/m9.figshare.11686800
title: Rolling up the pieces of a puzzle: A systematic review and meta-analysis of the prevalence of toxoplasmosis in Iran

description: Toxoplasmosis is a neglected parasitic disease with global distribution in warm-blooded vertebrates and high prevalence among different human societies. We contrived a systematic review and meta-analysis on the prevalence of toxoplasmosis in Iran. Following the general methodology recommended for systematic reviews and meta-analysis, four English and three Persian electronic databases were explored up to April 2016. Out of 105,139 examined samples of different hosts, the weighted overall prevalence was 37% (95% CI = 31–43). Due to the significant heterogeneity (<i>I</i><sup>2</sup> = 81.9%) the random-effects model was used. The pool estimated prevalence of toxoplasmosis in human intermediate hosts, animal intermediate hosts, and definitive hosts was 43% (95% CI = 38–47), 26 (95% CI = 17–35) and, 34% (95% CI = 22–46), respectively. Our results represent that regular inspection in food industries, improved screening programs using standard diagnostic assay as well as distinguishing toxoplasmosis condition in other zoonotic hosts are extremely recommended for better disease management in Iran.
DOI: 10.6084/m9.figshare.11686800.v1
title: Rolling up the pieces of a puzzle: A systematic review and meta-analysis of the prevalence of toxoplasmosis in Iran

description: Toxoplasmosis is a neglected parasitic disease with global distribution in warm-blooded vertebrates and high prevalence among different human societies. We contrived a systematic review and meta-analysis on the prevalence of toxoplasmosis in Iran. Following the general methodology recommended for systematic reviews and meta-analysis, four English and three Persian electronic databases were explored up to April 2016. Out of 105,139 examined samples of different hosts, the weighted overall prevalence was 37% (95% CI = 31–43). Due to the significant heterogeneity (<i>I</i><sup>2</sup> = 81.9%) the random-effects model was used. The pool estimated prevalence of toxoplasmosis in human intermediate hosts, animal intermediate hosts, and definitive hosts was 43% (95% CI = 38–47), 26 (95% CI = 17–35) and, 34% (95% CI = 22–46), respectively. Our results represent that regular inspection in food industries, improved screening programs using standard diagnostic assay as well as distinguishing toxoplasmosis condition in other zoonotic hosts are extremely recommended for better disease management in Iran.
DOI: 10.6084/m9.figshare.11686797
title: Proliferaton index in pituitary adenomas from a black African population

description: The WHO has recognized a variant of pituitary adenomas with potential aggressive behaviour which have been termed atypical pituitary adenomas. This group of tumours are recognized by their mitotic rate of more than &gt;3%, p53 expression and invasion of surrounding structures. There has however been no study of the occurrence of these tumours in a black African population. This study is a preliminary attempt to examine this group of tumours in blacks. This study retrospectively reviewed fifty-seven histologically diagnosed and immunohistochemically characterized pituitary adenomas received in our department over a twenty-one year period. Specimens were stained with ki67, a nuclear marker of cell proliferation which has been identified as the single best predictor of atypical pituitary adenoma. Twelve of the tumours showed atypical features with eight (67%) of these tumours being prolactinomas. Two of the tumours were gonadotrophs and two were null cell adenomas. There was no correlation with age or gender. Two of the tumours required neurosurgical re-exploration with one of these showing a higher mitotic index in the second biopsy. The study suggests similarity in the rate of occurrence of pituitary adenomas with atypical features in a black African population with what is seen in Caucasians. Prolactinomas constitute a significant percentage of the tumours with this feature.
DOI: 10.6084/m9.figshare.11686797.v1
title: Proliferaton index in pituitary adenomas from a black African population

description: The WHO has recognized a variant of pituitary adenomas with potential aggressive behaviour which have been termed atypical pituitary adenomas. This group of tumours are recognized by their mitotic rate of more than &gt;3%, p53 expression and invasion of surrounding structures. There has however been no study of the occurrence of these tumours in a black African population. This study is a preliminary attempt to examine this group of tumours in blacks. This study retrospectively reviewed fifty-seven histologically diagnosed and immunohistochemically characterized pituitary adenomas received in our department over a twenty-one year period. Specimens were stained with ki67, a nuclear marker of cell proliferation which has been identified as the single best predictor of atypical pituitary adenoma. Twelve of the tumours showed atypical features with eight (67%) of these tumours being prolactinomas. Two of the tumours were gonadotrophs and two were null cell adenomas. There was no correlation with age or gender. Two of the tumours required neurosurgical re-exploration with one of these showing a higher mitotic index in the second biopsy. The study suggests similarity in the rate of occurrence of pituitary adenomas with atypical features in a black African population with what is seen in Caucasians. Prolactinomas constitute a significant percentage of the tumours with this feature.
DOI: 10.6084/m9.figshare.11686596
title: MOESM4 of A systematic review of factors influencing NHS health check uptake: invitation methods, patient characteristics, and the impact of interventions

description: Additional file 4. List of Full Text Exclusions.