cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/cc13rdr0
title: CCDC 1035392: Experimental Crystal Structure Determination

description: Related Article: Shingo Harada, Masato Kono, Tomoyuki Nozaki, Yasuhiro Menjo, Tetsuhiro Nemoto, and Yasumasa Hamada|2015|J.Org.Chem.|80|10317|doi:10.1021/acs.joc.5b01954
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rbpw
title: CCDC 1035328: Experimental Crystal Structure Determination

description: Related Article: Xinhua Ouyang, Xiang-Long Li, Yongqi Bai, Dongbo Mi, Ziyi Ge, Shi-Jian Su|2015|RSC Advances|5|32298|doi:10.1039/C5RA05432J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rct1
title: CCDC 1035363: Experimental Crystal Structure Determination

description: Related Article: Chu-Ting Yang, Jun Han, Jun Liu, Mei Gu, Yi Li, Jun Wen, Hai-Zhu Yu, Sheng Hu, Xiaolin Wang|2015|Org.Biomol.Chem.|13|2541|doi:10.1039/C4OB02456G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13p2mh
title: CCDC 1033156: Experimental Crystal Structure Determination

description: Related Article: Ying Kai Loh, Chitra Gurnani, Rakesh Ganguly, Dragoslav Vidović|2015|Inorg.Chem.|54|3087|doi:10.1021/acs.inorgchem.5b00003
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13qnyf
title: CCDC 1034685: Experimental Crystal Structure Determination

description: Related Article: Hongwei Zhou, Hongjian Sun, Shumiao Zhang, and Xiaoyan Li|2015|Organometallics|34|1479|doi:10.1021/om5011929
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.188829
title: Susceptibility of sediment core GeoB3813-3
DOI: 10.1594/pangaea.905905
title: Geochemistry of incubated permafrost and seawater from the western Canadian Arctic

description: We present geochemical and hydrochemical information on individual permafrost and seawater samples from the Yukon Coast in the western Canadian Arctic used for an incubation experiment. The experiment mimicked erosion of permafrost coasts in the Arctic by mixing different kind of permafrost (i.e. organic-enriched and mineral) with ambient seawater at temperatures of 4 and 16°C during the course of 4 months (the approximate length of an Arctic open-water season). The data sets contain information on basic geochemical parameters measured before and after the experiment and on the production of greenhouse gases, which include carbon dioxide (CO2) and methane (CH4). This data set contains the geochemical and hydrochemical data for permafrost and seawater as well as the total amount of CO2 and CH4 cumulated during the course of the experiment. The study aims at understanding the role of eroding permafrost coasts for the Arctic carbon cycle and budget.
DOI: 10.5517/cc13rbt0
title: CCDC 1035332: Experimental Crystal Structure Determination

description: Related Article: Darapaneni Chandra Mohan, Chitrakar Ravi, Sadu Nageswara Rao, Subbarayappa Adimurthy|2015|Org.Biomol.Chem.|13|3556|doi:10.1039/C5OB00018A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc13rbv1
title: CCDC 1035333: Experimental Crystal Structure Determination

description: Related Article: Syed A. Haque, Rainier S. Berkley, Frank R. Fronczek, Md. Alamgir Hossain|2016|Inorg.Chem.Commun.|70|121|doi:10.1016/j.inoche.2016.05.013
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.188820
title: Susceptibility of sediment core GeoB3804-1
DOI: 10.1594/pangaea.93195
title: Susceptibility raw data of sediment core PS2084-1

description: Data given in 10**-5 SI units
DOI: 10.5517/cc13rdnx
title: CCDC 1035389: Experimental Crystal Structure Determination

description: Related Article: Zizhong Zhu, Kai Chen, Qin Xu and Min Shi|2015|Adv.Synth.Catal.|357|3081|doi:10.1002/adsc.201500407
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17412953
title: Migrating mesoderm cells self-organize into a dynamic meshwork structure during chick gastrulation

description: Supporting Information for


Migrating mesoderm cells self-organize into a dynamic meshwork structure during chick gastrulation

Yukiko Nakaya, Mitsusuke Tarama, Sohei Tasaki, Ayako Isomura-Matoba, Tatsuo Shibata

Laboratory for Physical Biology, RIKEN Center for Biosystems Dynamics Research, Kobe 650-0047, Japan.

 

Corresponding author: 

Tatsuo Shibata (tatsuo.shibata@riken.jp)



eLife 14, e84749 (2025), doi: 10.7554/eLife.84749




 





Numerical data used in the figures:



TrajectoryData_Nakaya.xlsx (Figures 1 and 4)

data_fig2G.xlsx (Figure 2G)

data_fig3C.xlsx (Figure 3C)

data_fig6C.xlsx (Figure 6C)

data_fig6D.xlsx (Figure 6D)




 





MATLAB script for generating Figures 1 and 4:



To reproduce Figures 1 and 4, first run the script generateTrackData.m to convert the trajectory dataset (TrajectoryData_Nakaya.xlsx) into a MATLAB data file (trackData.mat). Subsequent analyses are performed by twoPairsCorrelation.m, which generates twoPairsCorrelation.mat for use in figure generation.

generateTrackData.m (Perform analysis of trajectory data in TrajectoryData_Nakaya.xlsx used in Figures)

twoPairsCorrelation.m (Perform additional analysis on the cell-cell interation generating twoPairsCorrelation.mat)

Fig1C_4E.m (Figures 1C and 4E)

Fig1D_S1B.m (Figures 1D, Figure 1 figure supplement 1B)

Fig1E.m (Figure 1E)

Fig1FGH_S1C.m (Figures 1F, G, and H and Figure 1 figure supplement 1C)

Fig1I.m (Figure 1I)

Fig1J.m (FIgure 1J)

FigS1A.m (Figure 1 figure supplement 1A)

FigS1D.m (Figure 1 figure supplement 1D)

Fig4FI_S4AC.m (Figure 4F and I, and Figure 4 figure supplement 2AC)

Fig4G_S4B.m (Figure 4G, and Figure 4 figure supplemnet 2B)

Fig4H.m (Figure 4H)

Fig4JK_S4DE.m (FIgure 4J and K, and Figure 4 figure supplement 2DE)
DOI: 10.5281/zenodo.17412954
title: Migrating mesoderm cells self-organize into a dynamic meshwork structure during chick gastrulation

description: Supporting Information for


Migrating mesoderm cells self-organize into a dynamic meshwork structure during chick gastrulation

Yukiko Nakaya, Mitsusuke Tarama, Sohei Tasaki, Ayako Isomura-Matoba, Tatsuo Shibata

Laboratory for Physical Biology, RIKEN Center for Biosystems Dynamics Research, Kobe 650-0047, Japan.

 

Corresponding author: 

Tatsuo Shibata (tatsuo.shibata@riken.jp)



eLife 14, e84749 (2025), doi: 10.7554/eLife.84749




 





Numerical data used in the figures:



TrajectoryData_Nakaya.xlsx (Figures 1 and 4)

data_fig2G.xlsx (Figure 2G)

data_fig3C.xlsx (Figure 3C)

data_fig6C.xlsx (Figure 6C)

data_fig6D.xlsx (Figure 6D)




 





MATLAB script for generating Figures 1 and 4:



To reproduce Figures 1 and 4, first run the script generateTrackData.m to convert the trajectory dataset (TrajectoryData_Nakaya.xlsx) into a MATLAB data file (trackData.mat). Subsequent analyses are performed by twoPairsCorrelation.m, which generates twoPairsCorrelation.mat for use in figure generation.

generateTrackData.m (Perform analysis of trajectory data in TrajectoryData_Nakaya.xlsx used in Figures)

twoPairsCorrelation.m (Perform additional analysis on the cell-cell interation generating twoPairsCorrelation.mat)

Fig1C_4E.m (Figures 1C and 4E)

Fig1D_S1B.m (Figures 1D, Figure 1 figure supplement 1B)

Fig1E.m (Figure 1E)

Fig1FGH_S1C.m (Figures 1F, G, and H and Figure 1 figure supplement 1C)

Fig1I.m (Figure 1I)

Fig1J.m (FIgure 1J)

FigS1A.m (Figure 1 figure supplement 1A)

FigS1D.m (Figure 1 figure supplement 1D)

Fig4FI_S4AC.m (Figure 4F and I, and Figure 4 figure supplement 2AC)

Fig4G_S4B.m (Figure 4G, and Figure 4 figure supplemnet 2B)

Fig4H.m (Figure 4H)

Fig4JK_S4DE.m (FIgure 4J and K, and Figure 4 figure supplement 2DE)
DOI: 10.5517/cc13rcy5
title: CCDC 1035367: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdw4
title: CCDC 1035396: Experimental Crystal Structure Determination

description: Related Article: Tamal Chatterjee, Sivaiah Areti, and Mangalampalli Ravikanth|2015|Inorg.Chem.|54|2885|doi:10.1021/ic503028k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.760115
title: Susceptibility of sediment core Lz1120
DOI: 10.1594/pangaea.93194
title: Susceptibility raw data of sediment core PS2083-3

description: Data given in 10**-5 SI units
DOI: 10.5517/cc13rcz6
title: CCDC 1035368: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rd08
title: CCDC 1035369: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.828708
title: Point measurements of magnetic susceptibility from IODP Hole 336-U1383E

description: Geocode = Depth CSF-A (m)
DOI: 10.5517/cc13rd19
title: CCDC 1035370: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rd2b
title: CCDC 1035371: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rd3c
title: CCDC 1035372: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rd4d
title: CCDC 1035373: Experimental Crystal Structure Determination

description: Related Article: José S. Casas, M. Victoria Castaño, María D. Couce, Agustín Sánchez, José Sordo, M. Dolores Torres, Ezequiel M. Vázquez López|2015|J.Organomet.Chem.|789-790|29|doi:10.1016/j.jorganchem.2015.04.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12v413
title: CCDC 1008214: Experimental Crystal Structure Determination

description: Related Article: Juan P. Marcolongo, Thomas Weyhermüller, Leonardo D. Slep|2015|Inorg.Chim.Acta|429|174|doi:10.1016/j.ica.2014.12.039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rbw2
title: CCDC 1035334: Experimental Crystal Structure Determination

description: Related Article: Xing Guang Li, Min Sun, Kai Liu, Qiao Jin, Pei Nian Liu|2015|Chem.Commun.|51|2380|doi:10.1039/C4CC09314C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rc07
title: CCDC 1035338: Experimental Crystal Structure Determination

description: Related Article: Vadde Ramu, Firoj Ali, Nandaraj Taye, Bikash Garai, Aftab Alam, Samit Chattopadhyay, Amitava Das|2015|J.Mater.Chem.B|3|7177|doi:10.1039/C5TB01309G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rc3b
title: CCDC 1035341: Experimental Crystal Structure Determination

description: Related Article: Jonas König, Ina Dartsch, A. Topp, Eva Guillamón, Rosa Llusar and Martin Köckerling|2016|Z.Anorg.Allg.Chem.|642|572|doi:10.1002/zaac.201600039
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdjs
title: CCDC 1035385: Experimental Crystal Structure Determination

description: Related Article: Mirja Enders, Christian J. Friedmann, Philipp N. Plessow, Angela Bihlmeier, Martin Nieger, Wim Klopper, Stefan Bräse|2015|Chem.Commun.|51|4793|doi:10.1039/C5CC00492F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdkt
title: CCDC 1035386: Experimental Crystal Structure Determination

description: Related Article: Mirja Enders, Christian J. Friedmann, Philipp N. Plessow, Angela Bihlmeier, Martin Nieger, Wim Klopper, Stefan Bräse|2015|Chem.Commun.|51|4793|doi:10.1039/C5CC00492F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdlv
title: CCDC 1035387: Experimental Crystal Structure Determination

description: Related Article: Mirja Enders, Christian J. Friedmann, Philipp N. Plessow, Angela Bihlmeier, Martin Nieger, Wim Klopper, Stefan Bräse|2015|Chem.Commun.|51|4793|doi:10.1039/C5CC00492F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rc4c
title: CCDC 1035342: Experimental Crystal Structure Determination

description: Related Article: Emi Uchida, Reiko Azumi, Yasuo Norikane|2015|Nat.Commun.|6|7310|doi:10.1038/ncomms8310
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdmw
title: CCDC 1035388: Experimental Crystal Structure Determination

description: Related Article: Mirja Enders, Christian J. Friedmann, Philipp N. Plessow, Angela Bihlmeier, Martin Nieger, Wim Klopper, Stefan Bräse|2015|Chem.Commun.|51|4793|doi:10.1039/C5CC00492F
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.725400
title: Susceptibility of sediment core PS1929-2
DOI: 10.5517/cc13rcbk
title: CCDC 1035348: Experimental Crystal Structure Determination

description: Related Article: Laura Ferrand, Nicolas Das Neves, Max Malacria, Virginie Mouriès-Mansuy, Cyril Ollivier, Louis Fensterbank|2015|J.Organomet.Chem.|795|53|doi:10.1016/j.jorganchem.2015.02.003
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc13rdgq
title: CCDC 1035383: Experimental Crystal Structure Determination

description: Related Article: David R. Williams, Leslie A. Robinson, Seth A. Bawel|2015|Tetrahedron Lett.|56|3200|doi:10.1016/j.tetlet.2014.12.049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.1594/pangaea.351511
title: Volume susceptibility of sediment core PS1535-6
DOI: 10.5517/cc13rdhr
title: CCDC 1035384: Experimental Crystal Structure Determination

description: Related Article: David R. Williams, Leslie A. Robinson, Seth A. Bawel|2015|Tetrahedron Lett.|56|3200|doi:10.1016/j.tetlet.2014.12.049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.