cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fenxja
title: Occurrence Download

description: A dataset containing 75016 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((174.51017 -36.53922,174.51017 -36.77282,174.80177 -36.77282,174.80177 -36.53922,174.51017 -36.53922))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2015-2025"
 ]
}

 The dataset includes 75016 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026693-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wspaf8
title: Occurrence Download

description: A dataset containing 464048 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-90.47605 20.62522,-89.59911 21.19606,-88.44915 22.23847,-88.91244 22.88377,-91.61774 22.4453,-91.69219 21.54353,-91.19581 20.88996,-90.47605 20.62522))"
 ]
}

 The dataset includes 464048 records from 380 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026677-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdxd54
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sternarchorhynchus yepezi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026722-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vuy7j
title: Occurrence Download

description: A dataset containing 395715 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Vermont",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 395715 records from 185 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026702-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15163343
title: Metagenomes  and Metagenome-Assembled Genomes from Tidal Lagoons at a New York City Waterfront Park

description: We report the sequencing and analysis of 15 shotgun metagenomes from tidal lagoons and bay water at Bush Terminal Pier Park in Brooklyn, NY from July to September 2024. This waterfront park, developed on a former brownfield, is subject to storm- and sea level rise-related flooding, is a social and environmental amenity for area residents, and, in combination with efforts to rezone nearby industrial areas for mixed-use development, is impacted by the contested forces of gentrification. In addition to sports fields, there are a series of short nature trails through a small, wooded area, and walking paths near our focal lagoons. These lagoons have been used for community events (e.g., a community boating event in summer 2024) and we frequently encountered members of the public using these spaces. Notably, this park is an active site of ecological research and restoration. The Billion Oyster Project, a community organization building artificial oyster reefs across the New York Harbor, has an active community-maintained oyster reef in the innermost of our focal lagoons and preliminary plans to build another nearby.

Details:



"bin_coverage_coverm.tsv": CoverM output for each bin across metagenomic samples

"cog_counts.rda": Counts of individual COGs per MAG annotated by eggnogmapper

"high_quality_bins.txt": List of high-quality bins

"hq.taxonomy.gtdbtk.bac120.summary.tsv": Taxonomy of high quality bins from gtdbtk

"hq_bins.tar.gz": Fasta sequences of high-quality bins

"microreef_gRodon_out.rda": gRodon predictions for bins

"microreef_gRodon_scaffolds.rda": gRodon predictions for metagenomes

"quality_report.tsv": CheckM2 wuality report

"sylph_profiles.tar.gz": Sylph profiles for each metagenome

"S1_table_mag_info.csv": Summary information for each bin

"sylph_analysis.R": Code to analyze sylph output

"gRodon_analysis.R":  Code to analyze gRodon output

"checkv_hq_viral.fa": Fasta of high-quality viral MAGs

"checkv_hq_viral.tsv": CheckV output for high-quality viral MAGs

"checkv_hq_virsorter2.tsv": VirSorter2 output for high-quality viral MAGs

"bush_terminal_proximal_stations_NYC_Harbor_Water_Quality_20250728.csv" metadata from nearby NYC water quality monitoring stations during the study period
DOI: 10.5281/zenodo.16771119
title: Metagenomes  and Metagenome-Assembled Genomes from Tidal Lagoons at a New York City Waterfront Park

description: We report the sequencing and analysis of 15 shotgun metagenomes from tidal lagoons and bay water at Bush Terminal Pier Park in Brooklyn, NY from July to September 2024. This waterfront park, developed on a former brownfield, is subject to storm- and sea level rise-related flooding, is a social and environmental amenity for area residents, and, in combination with efforts to rezone nearby industrial areas for mixed-use development, is impacted by the contested forces of gentrification. In addition to sports fields, there are a series of short nature trails through a small, wooded area, and walking paths near our focal lagoons. These lagoons have been used for community events (e.g., a community boating event in summer 2024) and we frequently encountered members of the public using these spaces. Notably, this park is an active site of ecological research and restoration. The Billion Oyster Project, a community organization building artificial oyster reefs across the New York Harbor, has an active community-maintained oyster reef in the innermost of our focal lagoons and preliminary plans to build another nearby.

Details:



"bin_coverage_coverm.tsv": CoverM output for each bin across metagenomic samples

"cog_counts.rda": Counts of individual COGs per MAG annotated by eggnogmapper

"high_quality_bins.txt": List of high-quality bins

"hq.taxonomy.gtdbtk.bac120.summary.tsv": Taxonomy of high quality bins from gtdbtk

"hq_bins.tar.gz": Fasta sequences of high-quality bins

"microreef_gRodon_out.rda": gRodon predictions for bins

"microreef_gRodon_scaffolds.rda": gRodon predictions for metagenomes

"quality_report.tsv": CheckM2 wuality report

"sylph_profiles.tar.gz": Sylph profiles for each metagenome

"S1_table_mag_info.csv": Summary information for each bin

"sylph_analysis.R": Code to analyze sylph output

"gRodon_analysis.R":  Code to analyze gRodon output

"checkv_hq_viral.fa": Fasta of high-quality viral MAGs

"checkv_hq_viral.tsv": CheckV output for high-quality viral MAGs

"checkv_hq_virsorter2.tsv": VirSorter2 output for high-quality viral MAGs

"bush_terminal_proximal_stations_NYC_Harbor_Water_Quality_20250728.csv" metadata from nearby NYC water quality monitoring stations during the study period
DOI: 10.15468/dl.6w7bkh
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saltator multicolor)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026723-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wc5ztc
title: Occurrence Download

description: A dataset containing 1261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saltator nigriceps)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1261 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026724-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pw2jgk
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAE8155"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026725-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/sf86ac
title: Holy Loch Food Web

description: A project to assess species richness on the undisturbed lands at the head of the Holy Loch, Argyllshire. The main two ecosystems are mixed broadleaved woodland comprising willow and alder carr and mixed Atlantic rainforest, and "marsh" comprising saltmarsh, Atlantic salt meadows, burns, brackish pools, vegetated gravel, sea floor and sea water.
DOI: 10.15468/dl.xstjqf
title: Occurrence Download

description: A dataset containing 657360 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Massachusetts",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 657360 records from 241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026707-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4qdmpv
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Fossil, Living Specimen, Occurrence evidence)",
 "Geometry POLYGON((-116.31587 31.16315,-116.51586 31.12402,-116.05302 29.99729,-115.67588 29.80906,-115.1159 29.87349,-115.07019 30.15058,-115.12733 30.43674,-115.43018 30.96246,-115.72731 31.16315,-115.97873 31.17782,-116.31587 31.16315))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Actinemys marmorata"
 ]
}

 The dataset includes 46 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026726-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.beq8u9
title: Occurrence Download

description: A dataset containing 126024 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Brotogeris chiriri)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 126024 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026710-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4zdu9
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Glossogobius circumspectus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 56 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026729-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24utsm
title: Occurrence Download

description: A dataset containing 5561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Saltator orenocensis)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 5561 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026730-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29856683
title: Identyfikacja obszarów wzrostu oraz określenie potencjałów i barier rozwojowych gmin powiatu cieszyńskiego

description: <pre>Arkusze kalkulacyjne zawierają dane źródłowe i obliczenia wykorzystane w pracy magisterskiej pt. „Identyfikacja obszarów wzrostu oraz określenie potencjałów i barier rozwoju na terenie gmin powiatu cieszyńskiego”.</pre>
DOI: 10.6084/m9.figshare.29856683.v1
title: Identyfikacja obszarów wzrostu oraz określenie potencjałów i barier rozwojowych gmin powiatu cieszyńskiego

description: <pre>Arkusze kalkulacyjne zawierają dane źródłowe i obliczenia wykorzystane w pracy magisterskiej pt. „Identyfikacja obszarów wzrostu oraz określenie potencjałów i barier rozwoju na terenie gmin powiatu cieszyńskiego”.</pre>
DOI: 10.15468/dl.38a9au
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ecsenius hawaiiensis"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026732-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9m953
title: Occurrence Download

description: A dataset containing 55038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Oenocarpus bataua"
 ]
}

 The dataset includes 55038 records from 145 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026683-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z994sk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sicyopus nigriradiatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026734-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b9g7p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Brotogeris chiriri)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026737-250802193616735/datasets/export for details.
DOI: 10.15468/dl.xu96eu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salarias bicolor"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026735-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z27eqg
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Solegnathus dunckeri"
 ]
}

 The dataset includes 112 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026736-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16749420
title: Diurnal courses of stomatal conductance and leaf functional traits in Sonoran Desert Trees

description: Twelve tree species from the Sonoran Desert, representing different leaf phenologies—six deciduous and six evergreen species—were measured under field conditions. Stomatal conductance and leaf water potential were measured from 8:00 to 17:00 during the summer wet season (August to September), and only evergreen species were measured during the winter–spring dry season (October to May), in order to observe differences in stomatal responses. Additionally, we measured cell water relation traits and leaf morphological traits to assess stomatal and functional responses to fluctuating environmental conditions and to determine differences between leaf phenologies. The results of this study will be published in AoB Plants in the coming weeks.
DOI: 10.5281/zenodo.16749421
title: Diurnal courses of stomatal conductance and leaf functional traits in Sonoran Desert Trees

description: Twelve tree species from the Sonoran Desert, representing different leaf phenologies—six deciduous and six evergreen species—were measured under field conditions. Stomatal conductance and leaf water potential were measured from 8:00 to 17:00 during the summer wet season (August to September), and only evergreen species were measured during the winter–spring dry season (October to May), in order to observe differences in stomatal responses. Additionally, we measured cell water relation traits and leaf morphological traits to assess stomatal and functional responses to fluctuating environmental conditions and to determine differences between leaf phenologies. The results of this study will be published in AoB Plants in the coming weeks.
DOI: 10.15468/dl.98vbpn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Poephila cincta)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026743-250802193616735/datasets/export for details.
DOI: 10.15468/dl.84hcb8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salarias melanosoma"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026744-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ytd9sd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Poephila cincta)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026742-250802193616735/datasets/export for details.
DOI: 10.15468/dl.7bbh8z
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Poephila cincta)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026741-250802193616735/datasets/export for details.