cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.28633
title: Data, Text And Supporting Files For The Plos One Paper "The Aerodynamic Cost Of Head Morphology In Bats: Maybe Not As Bad As It Seems"

description: This is the data, text and all supporting files for the PLoS One paper entitled '<em>The Aerodynamic Cost of Head Morphology in Bats: Maybe Not as Bad as It Seems</em>' (doi: 10.1371/journal.pone.0126061)

The upload contains all supporting files, matlab scripts as well as the different versions of the paper (including the revisions and reviewer comments).

The data reported in the paper were previously released on the Bristol Research Data Repository under doi:10.5523/bris.ulxh4ri19mgs1hzn58a6194xi

ABSTRACT OF THE PAPER:

<strong>At first sight, echolocating bats face a difficult trade-off. As flying animals, they would benefit from a streamlined geometric shape to reduce aerodynamic drag and increase flight efficiency. However, as echolocating animals, their pinnae generate the acoustic cues necessary for navigation and foraging. Moreover, species emitting sound through their nostrils often feature elaborate noseleaves that help in focussing the emitted echolocation pulses. Both pinnae and noseleaves reduce the streamlined character of a bat's morphology. It is generally assumed that by compromising the streamlined charactered of the geometry, the head morphology generates substantial drag, thereby reducing flight efficiency. In contrast, it has also been suggested that the pinnae of bats generate lift forces counteracting the detrimental effect of the increased drag. However, very little data exist on the aerodynamic properties of bat pinnae and noseleaves. In this work, the aerodynamic forces generated by the heads of seven species of bats, including noseleaved bats, are measured by testing detailed 3D models in a wind tunnel. Models of Myotis daubentonii, Macrophyllum macrophyllum, Micronycteris microtis, Eptesicus fuscus, Rhinolophus formosae, Rhinolophus rouxi and Phyllostomus discolor are tested. The results confirm that non-streamlined facial morphologies yield considerable drag forces but also generate substantial lift. The net effect is a slight increase in the lift-to-drag ratio. Therefore, there is no evidence of high aerodynamic costs associated with the morphology of bat heads. </strong>
DOI: 10.5281/zenodo.28255
title: Tarl_41Ce19_2015-1

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28256
title: Tarl_41Ce19_2097-1

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28264
title: Tarl_41Ce19_2097-14

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28384
title: Precipitation Of Totalizer Gauges In The Limmern Area Owned By Meteodat, Status 2015-08-19

description: Precipitation [mm] of totalizer gauges in the Limmern area (Switzerland) owned by Meteodat, for the hydrological year, measured mostly in half-year resolution.<br>
This dataset includes the following stations:


	3094  Obersand           713500/188440 [8.92652°E/46.83742°N]  1940masl  1964-2014
	3095  Fridolinshütten    715240/186470 [8.94883°E/46.81940°N]  2110masl  1964-2014
	3099  Muttenkopf         720155/190400 [9.01426°E/46.85388°N]  2425masl  1945-2014
	3104  Mittler Guetbächi  719850/194810 [9.01142°E/46.89359°N]  1580masl  1964-2014
	3135  Tierälpli          708160/190240 [8.85696°E/46.85450°N]  2350masl  1964-2014


Funded currently or in the past by


	Meteodat GmbH
	Kraftwerke Linth-Limmern AG (AXPO and Kt. Glarus)


 

See also http://www.meteodat.ch/totalisatoren.html
DOI: 10.5281/zenodo.28272
title: Tarl_41Ce19_2210

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28274
title: Tarl_41Ce19_3070-1

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28278
title: Tarl_41Ce19_3959

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28286
title: Tarl_41Ce19_4020

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28292
title: Tarl_41Ce19_2006-4-84

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28298
title: Tarl_41Ce19_5897

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28304
title: Tarl_41Ce19_5915

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28307
title: Tarl_41Ce19_30342

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.5281/zenodo.28310
title: Tarl_41Ce19_Et221

description: In June of 2015, Caddo vessels from the George C. Davis (41CE19) collection were scanned at the Texas Archeological Research Laboratory (TARL) at the University of Texas at Austin. These scans were generated for use in a study of 3D geometric morphometrics and for public outreach. 

Many thanks to the Caddo Nation of Oklahoma and the Texas Archeological Research Laboratory for the requisite permissions and access.
DOI: 10.15468/dl.dtycdk
title: GBIF Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: DatasetKey: Scottish Wildlife Trust - Commissioned surveys and staff surveys and reports for Scottish Wildlife Trust reserves - Unassessed data. The dataset includes 0 records from 0 constituent datasets:
DOI: 10.5281/zenodo.28835
title: Ibol Dna Barcode Data For Plants

description: International Barcode of Life project (iBOL) Data Packages for Plants,  releases 2.00-6.00
description: Releases span  2011-06-30 (2.00, the first to include plants) to    2015-06-30 (6.00)
DOI: 10.5281/zenodo.28843
title: Ibol Dna Barcode Data For Animals (Coi)

description: International Barcode of Life project (iBOL) Data Packages for animals, releases 0.5-6.00.
description: Releases span 2009-12-31  to 2015-06-30 (6.00)
DOI: 10.5281/zenodo.28844
title: Ibol Dna Barcode Data For Fungi (Its)

description: International Barcode of Life project (iBOL) Data Package for fungi, release 3.0
DOI: 10.5281/zenodo.29070
title: Irradiance Monitoring Network Data And Wind Motion Vectors

description: The data.tar.gz archive contains data from an irradiance monitoring network in Tucson, Arizona for the period 2014-04-05 to 2014-06-30. It includes a sensor metadata csv, csv files for the measurements on each day,  csv files for the clearsky-profiles for each sensor on each day, and a time-series of the expected wind motion vectors obtained from a numerical weather model. This data was used to make short-term forecasts of solar irradiance.
DOI: 10.5281/zenodo.29429
title: Modelling Multi-Tier Enterprise Applications Behaviour With Design Of Experiments Technique

description: Dataset and scripts for the QUDOS'15 paper ' Multi-tier Enterprise Applications Behaviour with Design of Experiments Technique'.
DOI: 10.5281/zenodo.29243
title: Akeco Structure Library

description: The <strong>AKecoLib</strong> contains 46 models of <em>E. coli</em> adenylate kinase structures that were used to compare a computational approach to simulating macromolecular transitions (dynamic importance sampling) to experimentally observed structures.<sup>1</sup> The structures cover all conformations of AdK, from closed to open.

The structures in the library were generated by homology modelling<sup>2</sup> of the AKeco sequence on AdK structures found in the protein data bank (only variants with the LID domain were considered). For further details please refer to the paper.<sup>1</sup>

When using these structures in your own published work please cite Beckstein et al<sup>1</sup>.

See also http://becksteinlab.physics.asu.edu/resources/73/akeco-structure-library

<strong>License</strong>

Copyright © 2009 Oliver Beckstein, Elizabeth J. Denning, Thomas B. Woolf.

The structures are made available under a CreativeCommons Attributions-ShareAlike licence 3.0 basically you can modify and share the files but you must attribute them to us (e.g., by citing our paper) and you must make the modified files available under the same or a compatible licence.)

"AKeco Structure Library" by O. Beckstein, E. J. Denning, and T. B. Woolf is licensed under a Creative Commons Attribution-ShareAlike 3.0 International License. Based on a work at http://becksteinlab.physics.asu.edu/file_download/16/AKecoLib.tar.bz2.

 

<strong>Data</strong>

Download the file AKecoLib.tar.bz2 und unpack the compressed archive with tar -jxvf AKecoLib.tar.bz2.

The directory <em>AKecoLib</em> contains files in the PDB format as written by MODELLER <sup>2</sup>. The filename (e.g. AKeco_2RH5_A.pdb) indicates (1) the PDB code of the template and (2) the chain in the template (e.g. chain A of PDB: 2RH5).

<strong>References</strong>


	<sup>a</sup> <sup>b</sup> <sup>c</sup> O. Beckstein, E. J. Denning, J. R. Perilla, and T. B. Woolf. <em>Zipping and unzipping of adenylate kinase: Atomistic insights into the ensemble of open / closed transitions</em>. J. Mol. Biol., 394(1):160–176, 2009.
	<sup>a</sup> <sup>b</sup> N. Eswar, M. A. Marti-Renom, B. Webb, M. S. Madhusudhan D. Eramian, M. Shen, U. Pieper, A. Sali. Comparative Protein Structure Modeling With MODELLER. Current Protocols in Bioinformatics, John Wiley & Sons, Inc., Supplement 15, 5.6.1-5.6.30, 2006.
description: See also http://becksteinlab.physics.asu.edu/resources/73/akeco-structure-library
description: {"references": ["O. Beckstein, E. J. Denning, J. R. Perilla, and T. B. Woolf. Zipping and unzipping of adenylate kinase: Atomistic insights into the ensemble of open \u2194 closed transitions. J. Mol. Biol., 394(1):160\u2013176, 2009. doi: 10.1016/j.jmb.2009.09.009."]}
DOI: 10.5281/zenodo.29244
title: Uk Customer Services Call Statistics

description: talk to sky customer care here http://qwikfix.co.uk/sky-customer-services/ This version contains the code and data that was used to produce the results for open dataset "UK Customer Services Call Statistics " by Pölstrl et al. This record contains data on the performance against Customer service standards in relation to: performance against Customer service standards in relation to replies to Customer letters; outstanding out of service standard letters; customer complaints for performance against services, The number of calls to Hampshire's Sky Customer Service Centre. Includes data previously published in UKBA percentage of complaints responded to within service standards.   

    Complete Python API<br>
    Python 3 compatability for all scripts<br>
    All scripts consistently named openmc-* and installed together<br>
    New 'distribcell' tally filter for repeated cells<br>
    Ability to specify outer lattice universe<br>
    XML input validation utility (openmc-validate-xml)<br>
    Support for hexagonal lattices<br>
    Material union energy grid method<br>
    Tally triggers<br>
    Remove dependence on PETSc<br>
    Significant OpenMP performance improvements<br>
    Support for Fortran 2008 MPI interface<br>
    Use of Travis CI for continuous integration<br>
    Simplifications and improvements to test suite

<strong>*Published</strong> by Hampshire County Council.<br>
<strong>*Licensed </strong>Creative Commons Attribution Share-Alike   http://www.opendefinition.org/licenses/cc-by-sa

\(x = {-calls \pm \sqrt{duration^2-4ac} \over 2(time)}\)<br>
<strong>*Openness</strong> rating: Open Data *Certificate: Raw Level<br>
<strong>*Provided</strong> by: fixithere | *Source: https://sourceforge.net/u/stories/skycontact/


The information on this page (the dataset metadata) is also available in JSON format.


*<strong>API</strong>: /api/2/rest/package/uk-visas-immigration-customer-service-standards

*<strong>Read more about this site's CKAN API</strong> » http://data.gov.uk/data/api
description: {"references": ["http://africaopendata.org/dataset/uk-customer-service-centre-call-statistics/", "http://www.civicdata.io/dataset/uk-customer-contact-information-dataset", "http://ideas.arcgis.com/ideaView?id=087300000008HYfAAM", "http://data.gov.uk/apps/open-data-companion", "http://dataverse.scholarsportal.info/dvn/dv/blog", "http://arc.irss.unc.edu/dvn/dv/blog"]}
DOI: 10.5281/zenodo.29604
title: Gm Eeg Data Zip 2 Of 2

description: This is the EEG dataset part 2 of 2 for the paper "Reduction of Pavlovian bias in schizophrenia"

See part 1 for more information: 10.5281/zenodo.29601
DOI: 10.5281/zenodo.29608
title: Host-Pathogen Protein Interactions Predicted Using Structure

description: This dataset accompanies a manuscript describing a method to predict host-pathogen protein interactions using structure:

Host-pathogen protein interactions predicted by comparative modeling.<br>
Davis FP, Barkan DT, Eswar N, McKerrow JH, Sali A. Protein Sci (2007) 16:2585-2596.<br>
http://www.proteinscience.org/cgi/doi/10.1110/ps.073228407

The files contain predictions made for 10 human pathogens including species of Mycobacterium, Apicomplexa, and Kinetoplastida. The species.all.zip files contain all interactions predictions for each species along with the filter criteria that each interaction passed. The species.filter.zip files contains the same information, but only for the subset of interactions that passed the biological and network-level filters. These files can be viewed in any spreadsheet program, such as Excel.

 

Predictions were made for interactions between human and 


	Mycobacterium tuberculosis: mtuber
	Mycobacterium leprae: mleprae
	Leishmania major: lmajor
	Trypanosoma brucei: tbrucei
	Trypanosoma cruzi: tcruzi
	Cryptosporidium hominis: chominis
	Cryptosporidium parvum: cparvum
	Plasmodium falciparum: pfalciparum
	Plasmodium vivax: pvivax
	Toxoplasma gondii: tgondi
DOI: 10.5281/zenodo.27214
title: Dataset For Pyenson Et Al. 2015 Peerj

description: Supplemental datasets for the publication:

Pyenson et al. (2015), <em>Isthminia panamensis</em>, a new fossil inioid (Mammalia, Cetacea) from the Chagres Formation of Panama and the evolution of ‘river dolphins’ in the Americas. <em>PeerJ</em> 3:e1227; DOI 10.7717/peerj.1227 

The datasets included in this Zenodo archive include primarily raw CT scan data (DICOM files) and derived 3D models (OBJ and STL files) for the three major osteological elements of the type specimen (USNM 546125) of <em>Isthminia panamensis</em>: the skull; the mandible (i.e., right and left jaws); and the right scapula. Only DICOM data are available for the scapula at the current time. Eventually, all of the CT data and 3D models will be deposited into a Smithsonian digital repository.

All of the 3D models are also available at the Smithsonian X 3D website (http://3d.si.edu), where users can visualize, measure, manipulate them, and, subsequent to login, can download 3D files for printing. 

The files in this archive include materials published with the original article in <em>PeerJ</em> (Pyenson et al., 2015). 

The type specimen itself (USNM 546125) is housed in the Department of Paleobiology at the Smithsonian Institution's National Museum of Natural History in Washington, D.C.

Skull:

- 3D print ready model created from CT scan data. (333k triangle STL, MB)

- 3D model created from CT scan data. (333k triangle OBJ, 5 MB)

- DICOM data set. (319.56 MB)

Mandible:

- 3D print ready model created from CT scan data. (296k triangle STL, 7 MB)

- 3D model created from CT scan data. (296k triangle OBJ, MB)

- DICOM data set. (237.75 MB)

Scapula:

- DICOM data set. (93.45 MB)
DOI: 10.17036/8b015441-c598-4c50-a4c6-6ae62e58ebc7
title: 4 Tbit/s transmission reach enhancement using 10x400 Gbit/s super-channels and polarization insensitive dual band optical phase conjugation

description: The data sets collated in the first 12 worksheets comprise the BER measurements of the experiment reported in the associated papers, along with selected optical spectra. Each data point is reported as a mean and a peak to peak range, obtained from 5 individual oscilloscope captures using the signal processing software described in reference 41.             
Each worksheet shows the same information for a different configuration of the number of superchannels (or conventional channels). Worksheet titles indicate the centre of the  band who's measurement results are reported (transmitter optimised for this band) and the number of superchannels used. The first spreadsheet (193T WDM) uses a single sub-channel in place of the 400 Gbit/s super-channels. An additional worksheet reports the Raman OTDR measurement data         
The worksheets show, to the left of the solid blocked out column - performance without OPC, and to the right - performance with OPC.                
Presented results are (from top to bottom); A power sweep at the estimated transmission reach used to optimise the launch power, a measurement of the central superchannel as a function of transmission distance, and a measurement of the performance of each superchannel at the maximum reach where all superchannels were found to be operating below the FEC threshold. In addition, typical optical spectra at two transmission reaches are reported.                
Note, for a given worksheet results with OPC are of course frequency shifted from the without-OPC results.
DOI: 10.5281/zenodo.29526
title: Raw Data From Parlnet V2.1

description: This archive contains raw data collected by version 2.1 of the parlnet repository.

The MD5 sum of the archive is c5d84b9d66682ecc48f304279468ccc4.

Sources: official parliamentary websites and open data portals of Austria, Belgium, Bulgaria, the Czech Republic, Denmark, Finland, France, Hungary, Iceland, Ireland, Israel, Italy, Lithuania, Norway, Portugal, Romania, Slovakia, Sweden and Switzerland. Some of the data for Israel come from oknesset.org.

The code behind this data dump is at https://github.com/briatte/parlnet – please refer to it for the full list of data sources, which might have additional conditions for reuse than the license of this archive.
DOI: 10.14469/hpc/114
title: Collection

description: A test collection
DOI: 10.14469/hpc/115
title: Entry 1

description: entry 1 in a test collection
DOI: 10.14469/hpc/116
title: Entry 2

description: Test entry # 2
DOI: 10.14469/hpc/117
title: My collection

description: This is a placeholder for a collection
DOI: 10.5281/zenodo.29427
title: Allenminer Data Files

description: This dataset accompanies the ALLENMINER software package ( http://fredpdavis.com/allenminer ) that searches gene expression in the adult and developing mouse brain and spinal cord atlases published by the Allen Institute for Brain Science.

* fastsearch files are used to accelerate searches within named brain regions

* allenminer_manuscript_data.tar.gz contains the results of the searches described in the original publication (Davis and Eddy, 2009).
description: {"references": ["A tool for identification of genes expressed in patterns of interest using the Allen Brain Atlas. Davis FP and Eddy SR. Bioinformatics 2009. http://dx.doi.org/10.1093/bioinformatics/btp288"]}
DOI: 10.6084/m9.figshare.1523649
title: Non-Adherence to lifestyle Modification Recommendations of Diet & Exercise amongst Diabetic Patients
DOI: 10.5281/zenodo.29588
title: Pibase.Ligands Database Mysql Dump

description: This dataset is a mysql dump of the PIBASE.ligands database describing the overlap of small molecule and protein binding sites ( http://fredpdavis.com/pibase.ligands ) described in:

The overlap of small molecule and protein binding sites within families of protein structures.<br>
Davis FP, Sali A. <em>PLoS Comput Biology</em> 2010 6(2): e1000668.<br>
doi:10.1371/journal.pcbi.1000668
DOI: 10.5281/zenodo.29589
title: Pibase Database Files

description: This dataset is a mysql dump of the PIBASE relational database of structurally defined protein interfaces ( http://fredpdavis.com/pibase ) described here:

PIBASE: a comprehensive database of structurally defined protein interfaces. Davis FP, Sali A. <em>Bioinformatics</em> (2005) 21(9): 1901-1907<br>
http://dx.doi.org/10.1093/bioinformatics/bti277
DOI: 10.14469/hpc/119
title: Streptorubin atropisomer

description: (S)-Streptorubin dimer, calculated optical rotation
DOI: 10.15468/fau4vu
title: BioAcoustica: Wildlife Sounds Database
DOI: 10.14469/hpc/120
title: Streptorubin

description: Dimer