cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/tvm-f6e-9xq
title: Taxus cuspidata Siebold & Zucc.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.2d9t9x
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago lanceolata macrostachya, Plantago lanceolata minor, Plantago lanceolata pleiocephala, Plantago lanceolata altissima, Plantago lanceolata capitata, Plantago lanceolata communis, Plantago lanceolata elata, Plantago lanceolata eriophora, Plantago lanceolata glareosa, Plantago lanceolata lanuginosa)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 35 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001514-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnrjr7
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001515-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16038812
title: Dataset Goat Milk
DOI: 10.5281/zenodo.16038813
title: Dataset Goat Milk
DOI: 10.3535/w0t-0ec-ghs
title: Dicotyledoneae DC.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.d9w4gy
title: Occurrence Download

description: A dataset containing 620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus pumila",
 "Country is Ukraine",
 "HasCoordinate is true"
 ]
}

 The dataset includes 620 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001516-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16031998
title: Simulation files accomanying 'Effect of surface structure on adsorption and conformation of an amyloidogenic peptide'

description: Dataset containing files for running and analysing simulations contained in  'Effect of surface structure on adsorption and conformation of an amyloidogenic peptide'



gromacs input files for all simulations

gromacs trajectory files for beta=1 replicas

python analysis scripts
DOI: 10.5281/zenodo.16031999
title: Simulation files accomanying 'Effect of surface structure on adsorption and conformation of an amyloidogenic peptide'

description: Dataset containing files for running and analysing simulations contained in  'Effect of surface structure on adsorption and conformation of an amyloidogenic peptide'



gromacs input files for all simulations

gromacs trajectory files for beta=1 replicas

python analysis scripts
DOI: 10.15468/dl.je6w24
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei, Hong Kong, Macao)",
 "TaxonKey is Stemona japonica"
 ]
}

 The dataset includes 159 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001518-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2t9rhm
title: Occurrence Download

description: A dataset containing 192 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Cambodia",
 "OccurrenceStatus is Present",
 "TaxonKey is Polyplectron germaini"
 ]
}

 The dataset includes 192 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001520-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c67pjn
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001517-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ggf-5en-q37
title: Indeterminatae-dicot

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.fdsm7p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguillicoloides crassus",
 "Country is Poland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001521-250717081556266/datasets/export for details.
DOI: 10.15468/dl.e7ggcu
title: Occurrence Download

description: A dataset containing 4665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Fraxinus",
 "Year 1950-2025"
 ]
}

 The dataset includes 4665 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001523-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.37y5am
title: Occurrence Download

description: A dataset containing 17727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-122.07318 36.19962,-121.29863 36.19962,-121.29863 36.71519,-122.07318 36.71519,-122.07318 36.19962))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae",
 "Year 2014-2020"
 ]
}

 The dataset includes 17727 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001522-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15924507
title: MSD Spleen Dataset

description: Description

This dataset is a replicated copy of the Medical Segmentation Decathlon (MSD) Spleen Dataset, created solely to comply with PLOS ONE’s data availability requirements.The original dataset was developed and is maintained by the Medical Segmentation Decathlon organizers. Full details and the official source can be accessed here:Official Website: http://medicaldecathlon.com/Original License and Terms: Please refer to the official MSD repository for licensing and usage conditions.

No modifications have been made to the original data other than repackaging for hosting on a stable repository (Zenodo).

Citation

If you use this dataset, please cite the original source:Antonelli, M., et al. (2022). Medical Segmentation Decathlon. Nature Communications. DOI: 10.1038/s41467-022-30695-9

Notes





This replication has been uploaded exclusively to fulfill journal requirements.




All intellectual property rights belong to the original authors/organization.
DOI: 10.5281/zenodo.15924508
title: MSD Spleen Dataset

description: Description

This dataset is a replicated copy of the Medical Segmentation Decathlon (MSD) Spleen Dataset, created solely to comply with PLOS ONE’s data availability requirements.The original dataset was developed and is maintained by the Medical Segmentation Decathlon organizers. Full details and the official source can be accessed here:Official Website: http://medicaldecathlon.com/Original License and Terms: Please refer to the official MSD repository for licensing and usage conditions.

No modifications have been made to the original data other than repackaging for hosting on a stable repository (Zenodo).

Citation

If you use this dataset, please cite the original source:Antonelli, M., et al. (2022). Medical Segmentation Decathlon. Nature Communications. DOI: 10.1038/s41467-022-30695-9

Notes





This replication has been uploaded exclusively to fulfill journal requirements.




All intellectual property rights belong to the original authors/organization.
DOI: 10.15468/dl.uypuxc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguillicoloides crassus",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001526-250717081556266/datasets/export for details.
DOI: 10.15468/dl.3tyeqm
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago lanceolata lanuginosa, Plantago lanceolata sphaerocephala, Plantago lanceolata sphaerostachya, Plantago lanceolata sphaerostachya, Plantago lanceolata alpina, Plantago lanceolata altissima, Plantago lanceolata angustifolia, Plantago lanceolata angustifolia, Plantago lanceolata bakeri, Plantago lanceolata capitata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 230 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001524-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uat6uk
title: Occurrence Download

description: A dataset containing 6630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus pumila",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6630 records from 118 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001525-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/q3a-zc1-5fs
title: Caesalpiniaceae R. Br.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.ecvqsm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguillicoloides crassus",
 "Country is Tunisia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001527-250717081556266/datasets/export for details.
DOI: 10.15468/dl.z7zsr2
title: Occurrence Download

description: A dataset containing 1950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1950 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001529-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15816831
title: Fusing ERA5-Land and SMAP L4 for an Improved Global Soil Moisture Product-V2

description: This dataset provides an improved global surface soil moisture product for the surface soil layer, named adjusted ERA5-Land dataset and created by fusing ERA5-Land and SMAP L4 data using a mean-variance rescaling method optimized for long time-series alignment.  The dataset is validated against extensive global in-situ measurements from 1,615 stations with a total of 1.9 million measured soil moisture content. The dataset offers daily temporal resolution at a spatial resolution of 0.1°, covering the period from January 1st, 2015 to December 31st, 2020, and is provided in GeoTIFF files named by date (YYYYMMDD). The dataset can be further used for research and support drought monitoring, weather prediction, and water resource management, contributing to global climate resilience and informed decision-making across diverse ecosystems.
DOI: 10.5281/zenodo.16034523
title: Fusing ERA5-Land and SMAP L4 for an Improved Global Soil Moisture Product-V2

description: This dataset provides an improved global surface soil moisture product for the surface soil layer, named adjusted ERA5-Land dataset and created by fusing ERA5-Land and SMAP L4 data using a mean-variance rescaling method optimized for long time-series alignment.  The dataset is validated against extensive global in-situ measurements from 1,615 stations with a total of 1.9 million measured soil moisture content. The dataset offers daily temporal resolution at a spatial resolution of 0.1°, covering the period from January 1st, 2015 to December 31st, 2020, and is provided in GeoTIFF files named by date (YYYYMMDD). The dataset can be further used for research and support drought monitoring, weather prediction, and water resource management, contributing to global climate resilience and informed decision-making across diverse ecosystems.
DOI: 10.15468/dl.xqh725
title: Occurrence Download

description: A dataset containing 2559 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2559 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001530-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/2k7-tb1-8zy
title: Caesalpiniaceae R. Br.

description: Digital Specimen for the physical specimen hosted at Natural History Museum Vienna.
DOI: 10.15468/dl.src8xa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anguillicoloides crassus",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001532-250717081556266/datasets/export for details.
DOI: 10.15468/dl.nv42na
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine abchasica"
 ]
}

 The dataset includes 44 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001531-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q58tb9
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantago lanceolata capitata, Plantago lanceolata capitellata, Plantago lanceolata communis, Plantago lanceolata contigua, Plantago lanceolata dubia, Plantago lanceolata dubia, Plantago lanceolata elata, Plantago lanceolata elata, Plantago lanceolata erecta, Plantago lanceolata eriophora)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 69 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001533-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4zp9v
title: Occurrence Download

description: A dataset containing 4704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Ardisia crenata"
 ]
}

 The dataset includes 4704 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001534-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csr6fq
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urtica urens",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 33 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001538-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12499572
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5517/ccdc.csd.cc26j8pq
title: CCDC 2041433: Experimental Crystal Structure Determination

description: Related Article: Hanseok Yi, Suhwan Song, Sang Myeong Han, Jieun Lee, Woojae Kim, Eunji Sim, Dongil Lee|2023|Angew.Chem.,Int.Ed.|62|e202302591|doi:10.1002/anie.202302591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc291f3x
title: CCDC 2116528: Experimental Crystal Structure Determination

description: Related Article: Hanseok Yi, Suhwan Song, Sang Myeong Han, Jieun Lee, Woojae Kim, Eunji Sim, Dongil Lee|2023|Angew.Chem.,Int.Ed.|62|e202302591|doi:10.1002/anie.202302591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.16038377
title: Has this cell type annotation worked?

description: Present dataset is the result of applying reference-based RCTD cell typing method on the 8um bin of the public P2 human CRC dataset as downloaded from 10x website. Public single-cell HTAN CRC data (validation cohort) from CellXGene was used as a reference to assign cell labels. The choice of CRC for this illustration is purely random.

The dataset structure is as follows:

visiumhd-crc-p2
    adata
        visium-hd-crc-p2
            square_008um.h5ad
    atlas
        811ac326-d5a0-468e-9306-2a6f9874df0b.h5ad
        visium-hd-crc-p2
            adata_matched.h5ad
    example.ipynb
    pipeline_info
        versions.yml
    squidpy
        visium-hd-crc-p2
            figures
                centrality_scores.png
                co_occurrence_abnormal cell.png
                co_occurrence_goblet cell.png
                co_occurrence_gut absorptive cell.png
                co_occurrence_intestinal crypt stem cell of colon.png
                co_occurrence_intestinal enteroendocrine cell.png
                co_occurrence_intestinal epithelial cell.png
                co_occurrence_neoplastic cell.png
                co_occurrence_transit amplifying cell.png
                co_occurrence_tuft cell.png
                interaction_matrix.png
                nhood_enrichment.png
                spatial_scatter.png
            spatially_variable_genes.csv
            squidpy.h5ad

Interested parties are invited to look at `squidpy/visium-hd-crc-p2/squidpy.h5ad`, it contains the original counts matrix in `adata.X`, associated spatial information, as well as most abundant cell type in `adata.obs['cell_type']` and raw RCTD outputs in `adata.uns['cell_types']`. Furthermore, `example.ipynb` contains some toy scripts to get started with analysis. Other files are untransformed and transformed versions of source data and some basic squidpy plots.
DOI: 10.5517/ccdc.csd.cc291f4y
title: CCDC 2116529: Experimental Crystal Structure Determination

description: Related Article: Hanseok Yi, Suhwan Song, Sang Myeong Han, Jieun Lee, Woojae Kim, Eunji Sim, Dongil Lee|2023|Angew.Chem.,Int.Ed.|62|e202302591|doi:10.1002/anie.202302591
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.x4hurg
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urtica urens",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 499 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001536-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2lxhpq
title: CCDC 2410674: Experimental Crystal Structure Determination

description: Related Article: Xu-Xu Jia, Yu-Xi Yuan, Qi Lin, Bingbing Shi, Hong Yao, Wen-Juan Qu, Tai-Bao Wei, Jin-Fa Chen
|2025|Chin.J.Chem.|43|1385|doi:10.1002/cjoc.70005
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2m2bjl
title: CCDC 2415319: Experimental Crystal Structure Determination

description: Related Article: Shota Mizuno|2025|CSD Communication|||
description: Related Article: Shota Mizuno, Yoichi Obitsu, Munenori Inoue|2025|J.Fluorine Chem.|285-286|110437|doi:10.1016/j.jfluchem.2025.110437
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mm6s8
title: CCDC 2431540: Experimental Crystal Structure Determination

description: Related Article: Kana Kinoshita, Yiming Yang, Shiho Nagano, Shinnosuke Horiuchi, Yoshihide Nakao, Kenichiro Omoto, Eri Sakuda, Yasuhiro Arikawa, Keisuke Umakoshi
|2025|Dalton Trans.|54|9140|doi:10.1039/d5dt01078k
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.