cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16328489
title: LabDocs Unlocked: The 2025 ADLM Data Science Challenge

description: Dataset of synthetic lab procedures and FDA 510k clearence documents for LabDocs Unlocked: The 2025 ADLM Data Science Challenge.Warning: This dataset contains synthetic laboratory protocols that were generated by a large language model (LLM). These protocols are not validated methods and must not be used for any clinical, diagnostic, therapeutic, or patient‑care activities. They are provided solely for educational purposes.
DOI: 10.5281/zenodo.16328490
title: LabDocs Unlocked: The 2025 ADLM Data Science Challenge

description: Dataset of synthetic lab procedures and FDA 510k clearence documents for LabDocs Unlocked: The 2025 ADLM Data Science Challenge.Warning: This dataset contains synthetic laboratory protocols that were generated by a large language model (LLM). These protocols are not validated methods and must not be used for any clinical, diagnostic, therapeutic, or patient‑care activities. They are provided solely for educational purposes.
DOI: 10.15468/dl.kg9bwn
title: Occurrence Download

description: A dataset containing 1950 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1950 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035447-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.unm2ya
title: Occurrence Download

description: A dataset containing 1065 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lysimachia stenosepala"
 ]
}

 The dataset includes 1065 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035446-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcju98
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago sativa",
 "Country is Argentina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 361 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035450-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhqxuz
title: Occurrence Download

description: A dataset containing 736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammillaria compressa"
 ]
}

 The dataset includes 736 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035449-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqyfux
title: Occurrence Download

description: A dataset containing 2561 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stryphnodendron adstringens"
 ]
}

 The dataset includes 2561 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035448-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnunxa
title: Occurrence Download

description: A dataset containing 2098 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mammillaria magnimamma"
 ]
}

 The dataset includes 2098 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035451-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29631080
title: Closed-form least squares solution for the planar three-parameter transformation with a general weight matrix

description: Closed-form solutions of non-linear least squares problems avoid the risk of divergence or drifting to a local minimum as in the iterative methods. The unique solution is obtained with low numerical effort. In this contribution, a closed-form solution of the non-symmetric planar three-parameter transformation problem is derived in detail. The presented solution considers a fully populated weight matrix and is not restricted to infinitesimal rotation angles. The analysis of the objective function demonstrates that there may also be a secondary local minimum. Applying iterative approaches have the risk of getting stuck in the local minimum of the objective function.
DOI: 10.6084/m9.figshare.29631080.v1
title: Closed-form least squares solution for the planar three-parameter transformation with a general weight matrix

description: Closed-form solutions of non-linear least squares problems avoid the risk of divergence or drifting to a local minimum as in the iterative methods. The unique solution is obtained with low numerical effort. In this contribution, a closed-form solution of the non-symmetric planar three-parameter transformation problem is derived in detail. The presented solution considers a fully populated weight matrix and is not restricted to infinitesimal rotation angles. The analysis of the objective function demonstrates that there may also be a secondary local minimum. Applying iterative approaches have the risk of getting stuck in the local minimum of the objective function.
DOI: 10.7910/dvn/cdx5un
title: Sedimentary phosphorus deposits in a southern Caribbean gulf during the last millennium

description: Title: Sedimentary Phosphorus and Granulometric Records from the Gulf of Urabá Spanning the Last Millennium

Authors: Rúa et al.

Description:
This dataset contains geochemical and granulometric records from three sediment cores retrieved from the Gulf of Urabá (Caribbean Sea, Colombia), encompassing the last ~1,000 years. The data were collected to investigate long-term variations in sedimentary phosphorus (P) forms and their relationship with climate variability, land use change, and ecological risk. The dataset supports the manuscript entitled "Long-term sedimentary phosphorus dynamics in a tropical estuary shaped by climate variability and land use change."

Each core was analyzed for:

Total Phosphorus (TP) in mg P g⁻¹ dry sediment

Organic Phosphorus (OP) in mg P g⁻¹ dry sediment

Inorganic Phosphorus (IP) in mg P g⁻¹ dry sediment

Granulometric composition: median particle size (μm), and proportion of clay, silt, and sand fractions (%)

Radiometric Dating and Chronological Control: Age-depth models based on geochemical markers and luminescence, with calibrated calendar years (CE)

Core Depth: in cm

Climatic periods based on core stratigraphy and age models:

MWP: Medieval Warm Period

LIA: Little Ice Age

CWP: Contemporary Warm Period

Ecological Risk Assessment Index (PERI): Calculated using TP levels and established ecological thresholds to assess the potential for eutrophication and benthic degradation

Sampling Sites:

León River Mouth (Core A) – Highly fluvial-influenced, high OP accumulation

Atrato Delta Front (Core B) – Mixed fluvial–marine regime

Prodelta (Core C) – Marine-dominated, lower sedimentation rates

Temporal Coverage: ~1050 CE to 2000 CE
Spatial Coverage: Gulf of Urabá, Colombian Caribbean

Use:
The dataset is suitable for environmental geochemistry, climate-change studies, estuarine ecology, and sediment provenance analyses.

File format: XLSX (Excel spreadsheet)
DOI: 10.5281/zenodo.15320511
title: Generalizable neural-network parameterization of mesoscale eddies in idealized and global ocean models [Dataset]

description: This repository contains the following data:



factor-*.zip Is the training data generated from the global ocean model CM2.6, where factor value stands for the coarsening ratio between high-resolution and coarse grids

Data required to plot Figure 1 is in offline-skill-Figure-1.zip

Online metrics required to reproduce Figures 2,3 and 4 are in online-simulation-metrics.zip

NW2-*.zip is raw simulation data in the idealized configuration NeverWorld 2

OM4-*.zip is raw simulation data in the global configuration OM4


Note: the additional OM4 simulation (OM4-ZB20.zip) appears only in a subsequent paper, "Hybrid AI Coupled Sea-Ice Ocean Climate Models", while OM4-ANN.zip and OM4-Control.zip are the same in both papers.

Additional data required to plot Figure S5:



Offline skill of the subgrid model used in the Paper for online simulations is shown in offline-skill-of-ANN-used-in-online-simulations.zip

Offline skill of a bigger ANN trained on all data and with dimensional scaling is provided offline-skill-ANN-32-32-neurons.zip


Split of the dataset into train/test/validate is performed in time. param.nc contains grid information, permanent_features.nc contains time-independent features that potentially can be used for training (Coriolis frequency, beta-effect). 

Files train/test/validate.nc contain input and output features to the neural network:



u and v  [m/s] are horizontal velocities on Arakawa C grid 

SGSx and SGSy [m/s^2] are zonal and meridional subfilter forcing such that:


          du/dt=SGSx 

          dv/dt=SGSy 



Txx, Txy, Tyy [m^2/s^2]are horizontal subfilter momentum fluxes such that:


           du/dt = d Txx / dx + d Txy / dy

           dv/dt = d Txy / dx + d Tyy / dy



rel_vort_h = dv/dx - du/dy [1/s] is relative vorticity

sh_xx=du/dx - dv/dy [1/s] is horizontal tension

sh_xy_h=du/dy + dv/dx [1/s] is shearing strain. Note: Index h stands for the horizontal interpolation to the center of the computational cell where thickness (h) resides.

div=du/dx + dv/dy [1/s] is horizontal divergence

deformation_radius [m] is the first baroclinic Rossby deformation radius. 

deltaU [m/s] is the scale of vertical shear

NH [m/s] is the vertical integral of the Buoyancy frequency


The deformation radius, vertical shear and Buoyancy frequency can be used in future studies to address generalization to different turbulence regimes.
DOI: 10.5281/zenodo.16058005
title: Generalizable neural-network parameterization of mesoscale eddies in idealized and global ocean models [Dataset]

description: This repository contains the following data:



factor-*.zip Is the training data generated from the global ocean model CM2.6, where factor value stands for the coarsening ratio between high-resolution and coarse grids

Data required to plot Figure 1 is in offline-skill-Figure-1.zip

Online metrics required to reproduce Figures 2,3 and 4 are in online-simulation-metrics.zip

NW2-*.zip is raw simulation data in the idealized configuration NeverWorld 2

OM4-*.zip is raw simulation data in the global configuration OM4


Note: the additional OM4 simulation (OM4-ZB20.zip) appears only in a subsequent paper, "Hybrid AI Coupled Sea-Ice Ocean Climate Models", while OM4-ANN.zip and OM4-Control.zip are the same in both papers.

Additional data required to plot Figure S5:



Offline skill of the subgrid model used in the Paper for online simulations is shown in offline-skill-of-ANN-used-in-online-simulations.zip

Offline skill of a bigger ANN trained on all data and with dimensional scaling is provided offline-skill-ANN-32-32-neurons.zip


Split of the dataset into train/test/validate is performed in time. param.nc contains grid information, permanent_features.nc contains time-independent features that potentially can be used for training (Coriolis frequency, beta-effect). 

Files train/test/validate.nc contain input and output features to the neural network:



u and v  [m/s] are horizontal velocities on Arakawa C grid 

SGSx and SGSy [m/s^2] are zonal and meridional subfilter forcing such that:


          du/dt=SGSx 

          dv/dt=SGSy 



Txx, Txy, Tyy [m^2/s^2]are horizontal subfilter momentum fluxes such that:


           du/dt = d Txx / dx + d Txy / dy

           dv/dt = d Txy / dx + d Tyy / dy



rel_vort_h = dv/dx - du/dy [1/s] is relative vorticity

sh_xx=du/dx - dv/dy [1/s] is horizontal tension

sh_xy_h=du/dy + dv/dx [1/s] is shearing strain. Note: Index h stands for the horizontal interpolation to the center of the computational cell where thickness (h) resides.

div=du/dx + dv/dy [1/s] is horizontal divergence

deformation_radius [m] is the first baroclinic Rossby deformation radius. 

deltaU [m/s] is the scale of vertical shear

NH [m/s] is the vertical integral of the Buoyancy frequency


The deformation radius, vertical shear and Buoyancy frequency can be used in future studies to address generalization to different turbulence regimes.
DOI: 10.15468/dl.fpfx2d
title: Occurrence Download

description: A dataset containing 4057 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes aegypti",
 "Year 1900-2025"
 ]
}

 The dataset includes 4057 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035452-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.hh24b3
title: Dataset generated from Esri tool

description: Derived dataset generated by Esri geoprocessing tool using GBIF API
DOI: 10.15468/dl.scadwu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Litopenaeus vannamei",
 "Country is Venezuela (Bolivarian Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035453-250717081556266/datasets/export for details.
DOI: 10.15468/dl.74r66k
title: Occurrence Download

description: A dataset containing 225 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 225 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035457-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruttbu
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Ecuador",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035455-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pypt96
title: Occurrence Download

description: A dataset containing 2561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Triticum aestivum",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2561 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035454-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dagzk9
title: Occurrence Download

description: A dataset containing 17684 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is GPS locations of Ocelots on Laguna Atascosa National Wildlife Refuge from 2012-2021"
 ]
}

 The dataset includes 17684 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035458-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.96bjn4
title: Occurrence Download

description: A dataset containing 2417 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marshallia graminifolia"
 ]
}

 The dataset includes 2417 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035459-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.at77u2
title: Occurrence Download

description: A dataset containing 453827 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "DatasetKey is EOD – eBird Observation Dataset",
 "GadmGid is MEX",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 1900-1999"
 ]
}

 The dataset includes 453827 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035403-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9zvw5
title: Occurrence Download

description: A dataset containing 921 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia angustifolia"
 ]
}

 The dataset includes 921 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035461-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ka4nrr
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marshallia mohrii"
 ]
}

 The dataset includes 301 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035462-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pb8yft
title: Occurrence Download

description: A dataset containing 514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago sativa",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 514 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035463-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17323146
title: Data Set + Model + Manuscript
title: ROPA Europa
DOI: 10.5281/zenodo.17323147
title: Data Set + Model + Manuscript
title: ROPA Europa
DOI: 10.15468/dl.kxqx6p
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Homonota fasciata (Duméril & Bibron, 1836)"
 ]
}

 The dataset includes 190 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004614-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48597/a4dg-s89r
title: Measurement of Sulphate_total at Illmitz

description: Measurement of Sulphate_total at Illmitz
DOI: 10.48597/bcre-qgdj
title: Sulphate_total at Illmitz

description: Measurement of Sulphate_total at Illmitz
DOI: 10.15468/dl.9wy27r
title: Occurrence Download

description: A dataset containing 1833 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Gunnera tinctoria var. tinctoria, Gypsophila pilosa var. pilosa, Habenaria marquisensis F.Br., Hedera helix f. helix, Hedera helix f. poetarum (Nicotra) Mc All. & A.Rutherf.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1833 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004616-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hp9hyw
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Protomyctophum gemmatum Hulley, 1981",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 125 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004617-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68b65d
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Marmosa paraguayana Tate, 1931",
 "HasCoordinate is true"
 ]
}

 The dataset includes 84 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004618-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rz9srj
title: Occurrence Download

description: A dataset containing 293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Plethodon stormi Highton & Brame, 1965)"
 ]
}

 The dataset includes 293 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004619-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ujgwr
title: Occurrence Download

description: A dataset containing 447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Lithobates tarahumarae (Boulenger, 1917))"
 ]
}

 The dataset includes 447 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004620-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.