cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/9cvwa-tbt73
title: #92+E.coli bamA purified

description: Raw data files of #92+E.coli bamA purified
description: <strong>Tilt Series Date:</strong> 2015-04-30</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Chris Hayes and David Low UCSB</p>
<strong>Sample Preparation:</strong> These are E.cloacae mini cells (#92) mixed with purified E.coli BamA protein receptor. Both cells and BamA were blocked with BSA- 100g/ml for 30 minutes before mixing for 20 minutes.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-30-22/rawdata/</p>PS96A-atlas0003.mrc,  Tilt Series (Pixel Size 0.33 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-04-30-22/rawdata/PS96A-atlas0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        PS96A-atlas0003_part67_3.rec,  Reconstruction (Pixel Size 1.32 nm), 430.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dkf0r-x5f47
title: nanowire+type4pili+Chemo

description: Raw data files of nanowire+type4pili+Chemo
description: <strong>Tilt Series Date:</strong> 2015-05-11</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand</p>
<strong>Sample Preparation:</strong> This sample is from the chemostat. Nothing has been mutated. So its a wt chemostat sample</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-05-11-7/rawdata/</p>051115_nano0007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        051115_nano0007_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.mh9amu
title: Occurrence Download

description: A dataset containing 45391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "DatasetKey is one of (Pl@ntNet automatically identified occurrences, Observation.org, Nature data from around the World, Pl@ntNet observations, iNaturalist Research-grade Observations)",
 "GadmGid is FRA.11.10_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae",
 "Year 1995-2025"
 ]
}

 The dataset includes 45391 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009105-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9ebau
title: Occurrence Download

description: A dataset containing 632 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Herpailurus yagouaroundi (É.Geoffroy Saint-Hilaire, 1803)"
 ]
}

 The dataset includes 632 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003061-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c26897
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna y flora asociada al Plan de Ordenación y Manejo de la cuenca del río Banadía, jurisdicción del departamento de Arauca"
 ]
}

 The dataset includes 672 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003063-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.skf9ws
title: Occurrence Download

description: A dataset containing 442455 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "GadmGid is one of (USA.34_1, CAN.11.70.4_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Mimus polyglottos (Linnaeus, 1758)"
 ]
}

 The dataset includes 442455 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003033-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aux5kk
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Evolvulus nummularius"
 ]
}

 The dataset includes 19 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042800-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgd6fx
title: Occurrence Download

description: A dataset containing 311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 5.982593021007",
 "DecimalLongitude is less than 5.9856525741914",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 311 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042801-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm6b9p
title: Occurrence Download

description: A dataset containing 2926 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-106.9188 23.69913, -106.7688 23.69913, -106.7688 23.84913, -106.9188 23.84913, -106.9188 23.69913))"
 ]
}

 The dataset includes 2926 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042802-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3mgjaj
title: Occurrence Download

description: A dataset containing 410 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Modiolastrum gilliesii"
 ]
}

 The dataset includes 410 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042803-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.47gtd3
title: Occurrence Download

description: A dataset containing 1495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melica californica",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1495 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042804-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhkxad
title: Occurrence Download

description: A dataset containing 296 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 5.9856525741914",
 "DecimalLongitude is less than 5.98871212737579",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 296 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042805-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p9mlnp9h
title: Harmful Algal Bloom Toxins in Seabirds, Forage Fish, and Marine Invertebrates Across Alaska

description: These data include results from screening tissues of marine organisms for the presence of harmful algal bloom (HAB) toxins: saxitoxin and its related congeners (STX) and domoic acid (DA). Samples collected by USGS or submitted to our laboratory by partners or other stakeholders are screened using commercially available enzyme linked immunosorbent assays (ELISA). A subset of samples containing detectable levels of STX were subsequently analyzed using high-performance liquid chromatography (HPLC). The dataset consists of one table the ELISA test results for STX and DA and HPLC summary results for STX for birds, fish, and invertebrates. Some of these data have been previously published in other USGS data releases: https://www.doi.org/10.5066/P9UNY0FR and https://www.doi.org/10.5066/P9OK4I8M.
DOI: 10.15468/dl.8jetwt
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Continent is South America",
 "TaxonKey is Sarcaulus vestitus"
 ]
}

 The dataset includes 142 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042806-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75v9e6
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Rhinoceros unicornis",
 "Year 2020-2025"
 ]
}

 The dataset includes 239 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042807-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7tmnd7
title: Occurrence Download

description: A dataset containing 27220 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eretmochelys imbricata"
 ]
}

 The dataset includes 27220 records from 304 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042808-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5ym5h
title: Occurrence Download

description: A dataset containing 4968 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.9188 23.84913, -109.7688 23.84913, -109.7688 23.99913, -109.9188 23.99913, -109.9188 23.84913))"
 ]
}

 The dataset includes 4968 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042809-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cm5wnk
title: Occurrence Download

description: A dataset containing 7824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "DatasetKey is iNaturalist Research-grade Observations",
 "Month is August",
 "StateProvince is New Brunswick",
 "Year 2024-2024"
 ]
}

 The dataset includes 7824 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042810-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uhknj
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Canada",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Month is one of (January, February, March)",
 "TaxonKey is Aves",
 "Year 2025-2025"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042811-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj732w
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca calycina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 133 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042812-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57931/3003115
title: MSD CoP Webinar:  "Generative agents: A new frontier for representing human actors and their behavior in MSD models"

description: Context:
This webinar was hosted by the MultiSector Dynamics Community of Practice (MSD CoP; https://multisectordynamics.org).  
Talk #1: Behavioral Generative Agents for Energy Operations
Presenter:  Dr. Cong Chen (Thayer School of Engineering, Dartmouth College)
Abstract:
Accurately modeling consumer behavior in energy operations remains challenging due to inherent uncertainties, behavioral complexities, and limited empirical data. This talk introduces a novel approach leveraging generative agents--artificial agents powered by large language models--to realistically simulate customer decision-making in dynamic energy operations. 
Talk #2: Simulating multiple human perspectives in socio-ecological systems using large language models
Presenter:  Dr. Yongchao Zeng (Institute of Meteorology and Climate Research, Atmospheric Environmental Research (IMK-IFU) of the Karlsruhe Institute of Technology in Germany)
Abstract:
Understanding socio-ecological systems requires insights from diverse stakeholder perspectives. This talk describes a novel simulation system called HoPeS (Human-oriented Perspective Shifting). HoPeS enables model users to not only explore simulated socio-ecological systems (SESs) from a third-person observer's perspective but also take any of the simulated stakeholder roles, like playing an RPG game. By shifting multiple perspectives, model users can reflect and integrate the situated knowledge learned through the participatory simulation, approximating a more holistic and less biased understanding of SESs.
Moderators: Jim Yoon (MSD CoP Human Systems Modeling Working Group Co-Chair); Stefano Galelli (MSD CoP Using AI to Enhance MSD Research Working Group Co-Chair); Patrick M. Reed (MSD CoP Facilitation Team)
This webinar was held on:  November 13th, 2025 from 12-1 PM EST.
DOI: 10.15468/dl.mq3pvb
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 5.98871212737579",
 "DecimalLongitude is less than 5.99177168056019",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 193 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042813-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sndg5c
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-106.88201 28.29134,-105.80868 28.29134,-105.80868 28.93946,-106.88201 28.93946,-106.88201 28.29134))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ardea herodias"
 ]
}

 The dataset includes 438 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042814-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frwy9s
title: Occurrence Download

description: A dataset containing 422 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((-109.7688 23.84913, -109.6188 23.84913, -109.6188 23.99913, -109.7688 23.99913, -109.7688 23.84913))"
 ]
}

 The dataset includes 422 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042815-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcnk38
title: Occurrence Download

description: A dataset containing 257494 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pinus pinea"
 ]
}

 The dataset includes 257494 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042778-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16332566
title: Dataset of manually identified contrails in GOES ABI and VIIRS satellite imagery
DOI: 10.5281/zenodo.16332565
title: Dataset of manually identified contrails in GOES ABI and VIIRS satellite imagery
DOI: 10.5281/zenodo.17643281
title: Napari CTC example
DOI: 10.5281/zenodo.17643282
title: Napari CTC example
DOI: 10.34740/kaggle/dsv/13781620
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.edrmzm
title: Occurrence Download

description: A dataset containing 244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca cucullata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 244 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042817-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e194404v3-191572
title: National ZIP Code Crosswalk (1990-2020)

description: This data set identifies changes in ZIP Code boundaries between 1990 and 2020, and provides numeric codes that cluster the ZIP Codes into the smallest geographic unit, or group of ZIP Codes, that are consistent across a decade: 1990 – 2000, 2000 – 2010, and 2010 – 2020. This “crosswalk” covers the contiguous United States, Alaska, Hawaii, and the District of Columbia. Since much administrative data is available with ZIP Code as the smallest identifiable geography, ZIP Codes are often used to embed observations from administrative data (patients, businesses, survey respondents, etc.) within their social, demographic, and economic contexts. However, ZIP Code boundaries change over time, resulting in measurement error (matching observations to the wrong contextual unit) or missing data (due to an observation reporting a ZIP Code that did not exist at the beginning of the observational period). These data were collected, and the crosswalk created, in an attempt to resolve these data quality issues.
description: Not Applicable
description: Response Rates: Not Applicable
description: Presence of Common Scales: Not Applicable
description: These data are a complete census of all ZIP Code boundary changes that were published in the U.S. Postal Bulletin between 1990-2020.
description: ZIP Code boundary changes published in the U.S. Postal Bulletin between 1990-2020.  . Smallest Geographic Unit: ZIP Code
description: The U.S. Postal Bulletin is a biweekly administrative publication produced by the U.S. Postal Service which identifies and publishes ZIP Code administrative changes that are of interest to postal workers. Some of these changes do not affect the shape of ZIP Code boundaries (such as reassigning of a ZIP Code to a new administrative office). In other cases, some changes that do affect boundaries are announced and later retracted, while in other cases a ZIP Code may experience multiple boundary changes over the course of a decade. In this dataset, we only include changes that affect the boundaries of a ZIP Code, and we include what we have identified as a final geographic cluster, accounting for all changes that went into effect. This is meant to allow for researchers to identify the specific geographic area that a ZIP Code may refer to over the course of a decade.