cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26990923.v1
title: Additional file 2 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 2. Evidence Synthesis Search Strings. A detailed breakdown of search string development including: Crop; search terms used; number of hits; and, date searched.
DOI: 10.6084/m9.figshare.26990929
title: Additional file 4 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 4. Rapid Review Database. Database containing all articles used within the systematic map and all the metadata extracted from these articles. This file was exported from the access database used to store all relevant information gathered during the systematic map.
DOI: 10.6084/m9.figshare.26990929.v1
title: Additional file 4 of Evidence of development of underutilised crops and their ecosystem services in Europe: a systematic mapping approach

description: Additional file 4. Rapid Review Database. Database containing all articles used within the systematic map and all the metadata extracted from these articles. This file was exported from the access database used to store all relevant information gathered during the systematic map.
DOI: 10.6084/m9.figshare.26990953
title: Additional file 2 of Clinical situations for which 3D Printing is considered an appropriate representation or extension of data contained in a medical imaging examination: vascular conditions

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26990953.v1
title: Additional file 2 of Clinical situations for which 3D Printing is considered an appropriate representation or extension of data contained in a medical imaging examination: vascular conditions

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26990974
title: Additional file 2 of Patient-reported experiences and outcomes of virtual care during COVID-19: a systematic review

description: Additional file 2. Quality Assessment of Included Studies.
DOI: 10.6084/m9.figshare.26990974.v1
title: Additional file 2 of Patient-reported experiences and outcomes of virtual care during COVID-19: a systematic review

description: Additional file 2. Quality Assessment of Included Studies.
DOI: 10.6084/m9.figshare.26990989
title: Additional file 1 of Epigenetics of the far northern Yakutian population

description: Additional file 1. Supplementary Tables S1–S6.
DOI: 10.6084/m9.figshare.26990989.v1
title: Additional file 1 of Epigenetics of the far northern Yakutian population

description: Additional file 1. Supplementary Tables S1–S6.
DOI: 10.6084/m9.figshare.26990998
title: Additional file 2 of Transcriptomics reveals a core transcriptional network of K-type cytoplasmic male sterility microspore abortion in wheat (Triticum aestivum L.)

description: Additional file 2: Supplementary Table S1. Differentially expressed genes in MS line VS MR line(MSu vs MRu, MSb vs MRb, MSu vs MSb, MRu vs MRb). Supplementary Table S2. GO terms enriched for "MS line-VS-MR line" DEGs. Supplementary Table S3. KEGG pathways enriched for "MS line-VS-MR line" DEGs. Supplementary Table S4. ManMap pathways enriched for "MS line-VS-MR line" DEGs. Supplementary Table S5. qRT-PCR primer sequences for qPCR validation of plant hormone related DEGs in RNA sequencing data. Supplementary Table S6. The wheat-specific Taes_AFFY_0709 mapping file" Taes_AFFY_0709".
DOI: 10.6084/m9.figshare.26990998.v1
title: Additional file 2 of Transcriptomics reveals a core transcriptional network of K-type cytoplasmic male sterility microspore abortion in wheat (Triticum aestivum L.)

description: Additional file 2: Supplementary Table S1. Differentially expressed genes in MS line VS MR line(MSu vs MRu, MSb vs MRb, MSu vs MSb, MRu vs MRb). Supplementary Table S2. GO terms enriched for "MS line-VS-MR line" DEGs. Supplementary Table S3. KEGG pathways enriched for "MS line-VS-MR line" DEGs. Supplementary Table S4. ManMap pathways enriched for "MS line-VS-MR line" DEGs. Supplementary Table S5. qRT-PCR primer sequences for qPCR validation of plant hormone related DEGs in RNA sequencing data. Supplementary Table S6. The wheat-specific Taes_AFFY_0709 mapping file" Taes_AFFY_0709".
DOI: 10.6084/m9.figshare.26991010
title: Additional file 1 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 1. ROSES checklist of systematic map protocol.
DOI: 10.6084/m9.figshare.26991019
title: Additional file 4 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 4. Complete list of explicit definitions of perception.
DOI: 10.6084/m9.figshare.26991016
title: Additional file 3 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 3. Record of all articles.
DOI: 10.6084/m9.figshare.26991019.v1
title: Additional file 4 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 4. Complete list of explicit definitions of perception.
DOI: 10.6084/m9.figshare.26991022
title: Additional file 5 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 5. Complete reference list of the articles selected for full reading.
DOI: 10.6084/m9.figshare.26991025.v1
title: Additional file 6 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 6. Complete list of articles excluded in the title and abstract screening phase and the reasons for exclusion.
DOI: 10.5281/zenodo.2645645
title: (06)-He2019A-DS0001 – Tribolium castaneum foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy

description: (06)-He2019A-DS0001 – Tribolium castaneum foxQ2-5' line long-term live imaging dataset of embryonic development acquired with light sheet fluorescence microscopy
DOI: 10.6084/m9.figshare.26991016.v1
title: Additional file 3 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 3. Record of all articles.
DOI: 10.6084/m9.figshare.26991025
title: Additional file 6 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 6. Complete list of articles excluded in the title and abstract screening phase and the reasons for exclusion.
DOI: 10.6084/m9.figshare.26991028
title: Additional file 7 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 7. Data extracted from 361 articles after reading in full.
DOI: 10.6084/m9.figshare.26991022.v1
title: Additional file 5 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 5. Complete reference list of the articles selected for full reading.
DOI: 10.6084/m9.figshare.26991010.v1
title: Additional file 1 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 1. ROSES checklist of systematic map protocol.
DOI: 10.6084/m9.figshare.26991028.v1
title: Additional file 7 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 7. Data extracted from 361 articles after reading in full.
DOI: 10.6084/m9.figshare.26991043
title: Additional file 12 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 12. Complete list of the description of how perception shows up in results.
DOI: 10.6084/m9.figshare.26991043.v1
title: Additional file 12 of Existing evidence of conceptual differences in research on climate change perceptions among smallholders? A systematic map

description: Additional file 12. Complete list of the description of how perception shows up in results.
DOI: 10.6084/m9.figshare.26991064
title: Additional file 1 of Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice

description: Supplementary Material 1: Table S1. BIC values and the selected models for GWAS and TWAS. Table S2. Candidate genes for the GWAS peak identified at 6,199,732 bp on chromosome 8. Table S3. Candidate genes for the GWAS peak identified at 20,665,890 bp on chromosome 8. Table S4. Candidate genes for the GWAS peak identified at 17,902,506 bp on chromosome 11. Table S5. Summary of the top ten gene-phenotype associations for the 12 root phenotypes in TWAS. Table S6. Candidate gene selection from the 70 unique genes in the top-ten gene-phenotype associations in TWAS. Table S7. Summary of the six genes with a significant cis-eGWAS peak. Table S8. Summary of the filtering, GWAS, and eGWAS results for the 43 polymorphic variants from 2 kb upsteam to the end of the OsENT1 gene region. Table S9. Summary of the filtering, GWAS, and eGWAS results for the 24 polymorphic variants from 2 kb upsteam to the end of the OsDjA6 gene region. Table S10. SNP genotype of the 57 WRC acccessions at the putative TATA box-like motif, at the GWAS peak SNP, and at the eGWAS peak SNP
DOI: 10.6084/m9.figshare.26991064.v1
title: Additional file 1 of Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice

description: Supplementary Material 1: Table S1. BIC values and the selected models for GWAS and TWAS. Table S2. Candidate genes for the GWAS peak identified at 6,199,732 bp on chromosome 8. Table S3. Candidate genes for the GWAS peak identified at 20,665,890 bp on chromosome 8. Table S4. Candidate genes for the GWAS peak identified at 17,902,506 bp on chromosome 11. Table S5. Summary of the top ten gene-phenotype associations for the 12 root phenotypes in TWAS. Table S6. Candidate gene selection from the 70 unique genes in the top-ten gene-phenotype associations in TWAS. Table S7. Summary of the six genes with a significant cis-eGWAS peak. Table S8. Summary of the filtering, GWAS, and eGWAS results for the 43 polymorphic variants from 2 kb upsteam to the end of the OsENT1 gene region. Table S9. Summary of the filtering, GWAS, and eGWAS results for the 24 polymorphic variants from 2 kb upsteam to the end of the OsDjA6 gene region. Table S10. SNP genotype of the 57 WRC acccessions at the putative TATA box-like motif, at the GWAS peak SNP, and at the eGWAS peak SNP
DOI: 10.6084/m9.figshare.26991073
title: Additional file 2 of New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)

description: Additional file 2: Table S1. Sequence data summary. Table S2. Estimated genome size statistics. Table S3. Genome assembly summary metrics. Table S4. K-mer completeness and QV statistics. Table S5. Gene annotation summary statistics. Table S6. RepeatMasker summary tables. Table S7. LTR Assembly Index results for each of the newly assembled genomes. Table S8. PhyloNet output for each reticulation value. Table S9. A summary of structural variants identified by Syri between sea snakes. Table S10. OrthoFinder summary statistics. Table S11. Orthogroup summary statistics. Table S12. PAML drop-out results for each single-copy ortholog. Table S13. BUSTED-PH results for each single-copy ortholog. Table S14. Selection testing results for marine-specific positively selected genes. Table S15. RELAX results for each single-copy ortholog. Table S16. Over-representation results generated by PANTHER. Table S17. REVIGO clustering of the 46 most specifically enriched GO terms.
DOI: 10.6084/m9.figshare.26991073.v1
title: Additional file 2 of New chromosome-scale genomes provide insights into marine adaptations of sea snakes (Hydrophis: Elapidae)

description: Additional file 2: Table S1. Sequence data summary. Table S2. Estimated genome size statistics. Table S3. Genome assembly summary metrics. Table S4. K-mer completeness and QV statistics. Table S5. Gene annotation summary statistics. Table S6. RepeatMasker summary tables. Table S7. LTR Assembly Index results for each of the newly assembled genomes. Table S8. PhyloNet output for each reticulation value. Table S9. A summary of structural variants identified by Syri between sea snakes. Table S10. OrthoFinder summary statistics. Table S11. Orthogroup summary statistics. Table S12. PAML drop-out results for each single-copy ortholog. Table S13. BUSTED-PH results for each single-copy ortholog. Table S14. Selection testing results for marine-specific positively selected genes. Table S15. RELAX results for each single-copy ortholog. Table S16. Over-representation results generated by PANTHER. Table S17. REVIGO clustering of the 46 most specifically enriched GO terms.
DOI: 10.15468/dl.gq7y8b
title: Occurrence Download

description: A dataset containing 5244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Viburnum cylindricum Buch.-Ham. ex D.Don"
 ]
}

 The dataset includes 5244 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011675-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26991115
title: Additional file 3 of Functional connectivity of cognition-related brain networks in adults with fetal alcohol syndrome

description: Additional file 3.Static functional connectivity differences (differences of z-transformed correlation coefficients averages across groups) between the full set of regions of interest as visualized in Figure 1C.
DOI: 10.6084/m9.figshare.26991118.v1
title: Additional file 4 of Functional connectivity of cognition-related brain networks in adults with fetal alcohol syndrome

description: Additional file 4.Standardized effect sizes (partial eta2) of static functional connectivity differences as visualized in Figure 1D and ordered identical to additional file 3.
DOI: 10.6084/m9.figshare.26991118
title: Additional file 4 of Functional connectivity of cognition-related brain networks in adults with fetal alcohol syndrome

description: Additional file 4.Standardized effect sizes (partial eta2) of static functional connectivity differences as visualized in Figure 1D and ordered identical to additional file 3.
DOI: 10.6084/m9.figshare.26991193
title: Additional file 16 of Transcriptional and epigenetic changes during tomato yellow leaf curl virus infection in tomato

description: Additional file 16. Datasets. Dataset S1. Total reads from RNAseq, sRNAseq and WGBS-seq. Dataset S2. Gene Set Enrichment Analysis (GSEA) of the differentially expressed genes. Dataset S3. Clustering of the differentially expressed genes. Dataset S4. sRNA-seq statistics. Dataset S5. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 7 dpi. Dataset S6. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 14 dpi. Dataset S7. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with genes at 21 dpi. Dataset S8. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 7 dpi. Dataset S9. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 14 dpi. Dataset S10. Differentially expressed tomato siRNA loci (21-, 22- and 24-nt) overlapped with TEs/repeats at 21 dpi. Dataset S11. miRNAs expressed in tomato during TYLCV infection. Dataset S12. Degradome-seq analysis in tomato during TYLCV infection. Dataset S13. Predicted target genes for the sRNAs. Dataset S14. Differentially expressed phasiRNAs in tomato during TYLCV infection. Dataset S15. WGBS statistics.
DOI: 10.6084/m9.figshare.26991139
title: Additional file 1 of A super-pangenome of the North American wild grape species

description: Additional file 1: Table S1. Accessions collected for the nine Vitis species. Table S2. PacBio Single Molecule Real-Time sequencing statistics. Table S3. Consensus genomes maps statistics. Table S4. RNA sequencing statistics. Table S5. Short-read DNA sequencing statistics. Table S6. N50 (bp) statistics at chromosome level. Table S7. Heterozygosity estimates from nucmer structural variants analysis. Table S8. Hemizygosity estimates from pairwise gene mapping analysis using GMAP. Table S9. Genome size estimations from flow cytometry and ploidy estimations using PN40024 gene representation. Table S10. Gene ontology enrichment analysis in the rapidly evolving gene families. Table S11. Structural variants coverage from pairwise assembly comparisons with nucmer. Table S12. Absolute and relative number of genes per class including the ambiguous class. Table S13. Absolute and relative number of genes per class without the ambiguous class. Table S14. Consistency statistics between the graph-inferred and the orthology-based gene pangenomes. Table S15. Proportion of rapidly evolving genes per pangenome class. Table S16. Consistency statistics between the variants identified with nucmer (inter-genome pairwise comparisons) and with vg deconstruct (pangenome graph). Table S17. SNP frequency estimates from graph decomposition using vg deconstruct. Table S18. Mapping on the pangenome statistics (vg map). Table S19. HaploSync runs.
DOI: 10.6084/m9.figshare.26991205.v1
title: Additional file 1 of A mixed methods systematic review of mental health self-care strategies for Arabic-speaking refugees and migrants

description: Supplementary Material 1: Table 1-Study characteristics. Table 2-Participant characteristics. Table 3-Intervention. Table 4-Effectiveness. Table 5-Cultural appropriateness. Table 6-Participant experience
DOI: 10.6084/m9.figshare.26991112
title: Additional file 2 of Functional connectivity of cognition-related brain networks in adults with fetal alcohol syndrome

description: Additional file 2.Detailed naming of regions of interest and order key (overall and within networks)
DOI: 10.5281/zenodo.13734695
title: ORCHIDEE Gridded Nitrous Oxide Fluxes

description: ORCHIDEE simulation data (0.125°, daily, 1990-2022) over EYE-CLIMA domain (Europe 73N-35N, 25W-45E) for nitrous oxide emissions. Values are provided in kgN2O/m2/h for each grid cell (positive values correspond to source, negative values correspond to sink).
DOI: 10.5281/zenodo.13734696
title: ORCHIDEE Gridded Nitrous Oxide Fluxes

description: ORCHIDEE simulation data (0.125°, daily, 1990-2022) over EYE-CLIMA domain (Europe 73N-35N, 25W-45E) for nitrous oxide emissions. Values are provided in kgN2O/m2/h for each grid cell (positive values correspond to source, negative values correspond to sink).
DOI: 10.6084/m9.figshare.26991205
title: Additional file 1 of A mixed methods systematic review of mental health self-care strategies for Arabic-speaking refugees and migrants

description: Supplementary Material 1: Table 1-Study characteristics. Table 2-Participant characteristics. Table 3-Intervention. Table 4-Effectiveness. Table 5-Cultural appropriateness. Table 6-Participant experience
DOI: 10.6084/m9.figshare.26991226
title: Additional file 3 of Benchmarking splice variant prediction algorithms using massively parallel splicing assays

description: Additional file 3: Table S2. Tool specific thresholds at which 5%, 10%, and 20% of the 500,000 background variants are predicted to be splice disruptive. Transcriptomic normalized sensitivity values for each algorithm and benchmarked dataset overall, within exonic variants, within intronic variants, and within intronic variants after removing variants at essential splice sites. Tables of sensitivity values are provided at transcriptome normalized cut offs of 5%, 10%, and 20% as well as the area under the curve (AUC) values.
DOI: 10.6084/m9.figshare.26991229
title: Additional file 4 of Benchmarking splice variant prediction algorithms using massively parallel splicing assays

description: Additional file 4: Table S3. Optimal score thresholds for each tool within the benchmarked datasets and across variant classes as defined in Figure 1B.
DOI: 10.6084/m9.figshare.26991139.v1
title: Additional file 1 of A super-pangenome of the North American wild grape species

description: Additional file 1: Table S1. Accessions collected for the nine Vitis species. Table S2. PacBio Single Molecule Real-Time sequencing statistics. Table S3. Consensus genomes maps statistics. Table S4. RNA sequencing statistics. Table S5. Short-read DNA sequencing statistics. Table S6. N50 (bp) statistics at chromosome level. Table S7. Heterozygosity estimates from nucmer structural variants analysis. Table S8. Hemizygosity estimates from pairwise gene mapping analysis using GMAP. Table S9. Genome size estimations from flow cytometry and ploidy estimations using PN40024 gene representation. Table S10. Gene ontology enrichment analysis in the rapidly evolving gene families. Table S11. Structural variants coverage from pairwise assembly comparisons with nucmer. Table S12. Absolute and relative number of genes per class including the ambiguous class. Table S13. Absolute and relative number of genes per class without the ambiguous class. Table S14. Consistency statistics between the graph-inferred and the orthology-based gene pangenomes. Table S15. Proportion of rapidly evolving genes per pangenome class. Table S16. Consistency statistics between the variants identified with nucmer (inter-genome pairwise comparisons) and with vg deconstruct (pangenome graph). Table S17. SNP frequency estimates from graph decomposition using vg deconstruct. Table S18. Mapping on the pangenome statistics (vg map). Table S19. HaploSync runs.
DOI: 10.6084/m9.figshare.26991226.v1
title: Additional file 3 of Benchmarking splice variant prediction algorithms using massively parallel splicing assays

description: Additional file 3: Table S2. Tool specific thresholds at which 5%, 10%, and 20% of the 500,000 background variants are predicted to be splice disruptive. Transcriptomic normalized sensitivity values for each algorithm and benchmarked dataset overall, within exonic variants, within intronic variants, and within intronic variants after removing variants at essential splice sites. Tables of sensitivity values are provided at transcriptome normalized cut offs of 5%, 10%, and 20% as well as the area under the curve (AUC) values.
DOI: 10.6084/m9.figshare.26991262
title: Additional file 8 of Conservation genetics and potential geographic distribution modeling of Corybas taliensis, a small ‘sky Island’ orchid species in China

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.26991247
title: Additional file 4 of Conservation genetics and potential geographic distribution modeling of Corybas taliensis, a small ‘sky Island’ orchid species in China

description: Supplementary Material 4