cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/j93r4fy2z2
title: The formation of the Loess Plateau in China

description: The dataset contains hydrogen and oxygen isotope data of different water bodies in the Loess Plateau, Pb isotope of loess, surrounding deserts, grassland, and volcanic rocks in Tibetan Plateau collected from different references, and Helium isotope of groundwate. Hydrogen and oxygen helps to determine the groundwater source of the Loess Plateau. Helium isotope is used to analysis the depth of groundwater transport. Pb isotope is used to further study the deposition of loess and red clay.
DOI: 10.6084/m9.figshare.11662950.v3
title: Brain abscess: clinical, radiological and microbiological data for a retrospective UK cohort

description: These files are the supporting metadata for a retrospective analysis of a clinical cohort of adults with a diagnosis of bacterial brain abscess at Oxford University Hospitals NHS Foundation Trust, in the UK. The study was locally approved as a clinical audit.<br>The xls file contains the clinical metadata reported by our study.<br>We have provided a STROBE statement (Strengthening the Reporting of Observational Studies in Epidemiology)<br>The supplementary data file (pdf) contains the following information:<br><b>Suppl Figure 1: </b>CONSORT diagram for identification of a cohort of adults with brain abscesses from a tertiary referral hospital in the UK. <br><b>Suppl Fig 2: </b>Duration of antibiotic therapy for adults treated for bacterial brain abscess<br><b>Suppl Table 1: </b>Association between S. milleri infection and other patient characteristics in a cohort of 39 adults with positive microbiology diagnosis of bacterial brain abscess<br><b>Suppl Table 2</b>: Number of surgical interventions undertaken for 47 adults presenting with brain abscess<br>
DOI: 10.6084/m9.figshare.12793757.v1
title: SupplementaryTable1.xlsx

description: Supplementary Table 1 "Revised ages for key tephras in Ōrākei Basin maar core, Auckland Volcanic Field, New Zealand"
DOI: 10.6084/m9.figshare.6667637.v1
title: EMG Raw Data

description: Raw EMG data for our PeerJ study on baseball pitchers and bench press variants.<br>
DOI: 10.6084/m9.figshare.6848738.v1
title: tcs-arc-dataset

description: The dataset consists of training, validation and test set for the objects listed in Amazon robotics challenge-2017. This data collection is a supplement to the paper: '<b>A deep framework for automatic annotation with application to retail warehouses</b>'. Training and validation sets consist of artificially generated cluttered images, their annotated masks and the original cluttered images for testing purpose in test set folder.<br><br>
DOI: 10.17632/gtxnrc5m3d
title: Mercury abundance and isotopic composition in granitic rocks: Implications for Hg cycling in the upper continental crust

description: The dataset includes whole-rock major and trace element composition of three types of granites studied in Table S1, Hg concentration and isotopic compositions of three types of granites and metasedimentary enclaves in Table S2, Hg concentration of upper crustal rocks in Table S3, and Hg isotopic composition of upper crustal rocks in Table S4.
DOI: 10.17632/wpw9xssjzm
title: Data for: Trace element associations in hydrothermal pyrite at the Geita Hill gold deposit, Tanzania, revealed through LA-ICP-MS mapping

description: Database contains LA-ICP-MS data and data reduction techniques relevant to the submitted article "Trace element associations in hydrothermal pyrite at the Geita Hill gold deposit, Tanzania, revealed through LA-ICP-MS mapping", along with a contents file. Appendix 1 contains the LA-ICP-MS spot analysis data cited in the article Appendix 2 contains all LA-ICP-MS data processed for this research. Appendix 3 contains all La-ICP-MS transects processed for this research. All transects were ablated through pyrite grains. Appendix 4 contains the 9 LA-ICP-MS trace element images as a stand-alone ArcMap database file. Instructions for reading this file are included in the contents PDF. Appendix 5 contains the data reduction methodology used to create the trace element images. Appendix 6 contains the raw data underpinning the trace element images.
DOI: 10.6084/m9.figshare.22341229.v1
title: Untitled Item

description: All descriptions are available in the README.md file
DOI: 10.6084/m9.figshare.27180534.v2
title: Nature’s Hiring in Science survey 2024

description: <i>Springer Nature</i> conducted a global survey of hiring managers in science in 2024, in partnership with Thinks Insights & Strategy, a research consultancy based in London. The survey launched in June 2024 and received 1,134 self-selecting respondents from 77 countries, based in academia, industry, and other sectors, including industry responses provided in partnership from Walr, a market research panel. The findings are covered in an article series from Nature’s careers team.
DOI: 10.17632/grnysjzscw
title: Utility of the repetitive nerve stimulation test and needle electromyography in the trapezius muscle for the early diagnosis of amyotrophic lateral sclerosis

description: Data of the repetitive nerve stimulation test and needle electromyography in the trapezius muscle of patients with amyotrophic lateral sclerosis.
DOI: 10.6084/m9.figshare.25109177.v1
title: Code, raw and processed data for: <b>Central Arctic Ocean surface- atmosphere exchange of CO</b><b>2 </b><b>and CH</b><b>4 </b><b>constrained by direct measurements</b>John Prytherch et al., Biogeosciences, 2024

description: Code (MATLAB), raw and processed data corresponding to the results presented in <b>Central Arctic Ocean surface- atmosphere exchange of CO</b><b>2 </b><b>and CH</b><b>4 </b><b>constrained by direct measurements</b> (Prytherch et al., 2024)
DOI: 10.6084/m9.figshare.26088103.v1
title: Data Groundwater level in Iraq

description: Groundwater in Iraq, Water level in Iraq, Water depth in Iraq, GIS, shapefile, TIFF file, QGIS, Groundwater data, Water table of Iraq, Hydrology, GIS technology, Observation wells, GRACE satellite. Iraq, Baghdad.
DOI: 10.6084/m9.figshare.28675031.v3
title: Panoramic photoacoustic computed tomography with learning-based classification and segmentation enhances breast lesion characterization

description: Supporting data and source codes for manuscript "Panoramic photoacoustic computed tomography with learning-based classification and segmentation enhances breast lesion characterization"
DOI: 10.17632/6ds6dtyywk
title: Investigation on Vibration Response Characteristics and Influencing Factors of the Fuel Rods of EPR

description: full_date
DOI: 10.6084/m9.figshare.20300745.v1
title: Crypto white papers documents

description: This is the database used in the script 'information_density_whitepapers'.
DOI: 10.6084/m9.figshare.22691398.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.28216154.v1
title: Fecal Indicator Bacteria monitoring long-term dataset for the Delaware River Basin

description: Data and scripts for "High fecal indicator bacteria in temperate headwater at baseflow: implications for management and public health" by Daniel T. Myers, Laura Zgleszewski, Raven Bier, Jacob R. Price, Shane Morgan, John K. Jackson, Diana Oviedo-Vargas, Melinda Daniels, David B. Arscott, and Jinjun Kan<br><br>The file "Bacteria_manuscript_figures.rmd" reproduces the figures and statistics in the manuscript from the data, run in R version 4.3.1. The script describes and reads in several .csv data files.<br>Land cover data was from the US National Land Cover Database 2019: Dewitz, J., & USGS. (2021). National Land Cover Database (NLCD) 2019 Products (ver. 2.0, June 2021). In U.S. Geological Survey data release.<br>Rivers data are from the US National Hydrography Dataset: Moore, R. B., & Dewald, T. G. (2016). The Road to NHDPlus - Advancements in Digital Networks and Associated Catchments. JAWRA Journal of the American Water Resources Association, 52(4), 890–900. https://doi.org/10.1111/1752-1688.12389<br>Mushroom farm data are from: Homsey, A., 2020. MushroomFarms Layer. White Clay Basemap of the White Clay Creek National Scenic River. https://udel.maps.arcgis.com/apps/webappviewer/index.html?id=4bd6252384a44beca0105e5ed4cd64d0.Latitude and longitude coordinates for the monitoring sites (MASTER Bacteria Monitoring SiteKey_AsOf01MAR23.shp) were removed from the published dataset over concerns of sensitive private information. Please contact us if you have questions about those data.<br>For more information, contact:<br>Jinjun Kan, Ph.D.Senior Research ScientistStroud Water Research Center970 Spencer Road, Avondale, PA 19311O: 610-910-0047;jkan@stroudcenter.orghttps://stroudcenter.org/people/kan/
DOI: 10.6084/m9.figshare.3554532.v1
title: Appendix D. Pictures and explanation of trapping techniques.

description: Pictures and explanation of trapping techniques.
DOI: 10.17632/dk54zg67dd
title: Counting cattle Dataset: Supporting livestock Multi Objetct Tracking

description: Abstract
Livestock farming has made technological advancements in recent times; however, there is still much to improve, as AI and computer vision have not yet fully penetrated the area. Livestock farming involves many routine tasks that require automation for improved control over production processes. Although the scientific community has made significant efforts to support precision livestock farming in recent years, artificial intelligence-based solutions for livestock counting and management remain limited (Myat Noe et al., 2023). Myat Noe et al. (2023) proposed a method for counting black cattle counting using the YOLO (You Only Look Once) object detection framework, in combination with the Detectron2 segmentation model and the DeepSORT (Wojke, Bewley and Paulus, 2017) and StrongSORT (Du et al., 2023) Multi Object Tracking (MOT) solutions. The study highlights the challenges faced in supporting cattle tracking as MOT solutions generally target objects with distinctly visual features. In the context of cattle detection and tracking, the requirements are more demanding due to the high visual similarity in color and shape among individuals. As a result, additional effort is still required to support precision agriculture through cattle identification and monitoring. This includes the creation of custom datasets for livestock MOT since existing public repositories do not meet the specific needs of this application. Moreover, retraining the models and applying additional techniques in combination are still necessary to achieve more satisfactory results (Myat Noe et al., 2023). In this context, the present dataset provides a series of videos and ground truth information for tracking Brangus cattle in a ranch environment in Uruguay. The dataset maintains consistent bounding boxes and identifiers for individual animals, being specifically useful for evaluating the effectiveness of tracking algorithms in support of cattle monitoring through MOT metrics.

DataRecords
The dataset contains 10 preselected videos, totaling a recording time of 3.17 minutes and a total of 93 cattle. It is organized into folders, one containing the videos used for tracking and another folder containing the ground truth, which consists of a CSV file with the processed information and the video on which the analysis was performed. The detection values were stored in the mentioned CSV file, so they can be processed later. Each line represents a detection, with the following information per line:
-The frame number corresponding to the detection
-The identifier number corresponding to the detected object
-The x-coordinate value of the top-left corner of the detected object
-The y-coordinate value of the top-left corner of the detected object
-The width of the bounding box
-The height of the bounding box
-The confidence of the detection

Further information on dataset construction and organization available on the dataset description attached file.
DOI: 10.6084/m9.figshare.26537350.v1
title: Supplementary Material for: Lower Plasma Levels of Selective VGF (non-acronymic) Peptides in Bipolar Disorder: Comparative Analysis Reveals Distinct Patterns Across Mood Disorders and Healthy Controls

description: Introduction Discriminating bipolar disorder (BD) from major depressive disorder (MDD) remains a challenging clinical task. Identifying specific peripheral biosignatures that can differentiate between BD and MDD would significantly increase diagnostic accuracy. Dysregulated neuroplasticity is implicated in BD and MDD, and psychotropic medications restore specific disrupted processes by increasing neurotrophic signalling. The nerve growth factor inducible vgf gene (nonacronymic) encodes a precursor protein named proVGF, which undergoes proteolytic processing to produce several VGF peptides, some of which were suggested to be implicated in mood disorders and have antidepressant effects. Since the presence of VGF peptides in humans has been exclusively investigated in brain and cerebrospinal fluid, we aimed to identify which VGF peptides are present in the plasma and to investigate whether their levels could differentiate BD from MDD as well as responders from non-responders to pharmacological interventions. Methods VGF peptides were measured in plasma from patients diagnosed with MDD (n=37) or BD (n=40 under lithium plus n=29 never exposed to lithium), as well as healthy controls (HC; n=36). Results Three VGF peptides (TLQP-11, AQEE-14 and NAPP-19) were identified using spectrometry analysis of plasma from HC. These peptides were then measured in the entire sample using ELISA immunoassay, which showed significantly lower levels of AQEE and NAPP in BD than in HC and MDD (p=5.0x10-5, p=0.001, respectively). Conclusion Our findings suggest that lower plasma levels of NAPP and AQEE are specifically associated with BD, thus possibly representing a diagnostic biomarker in mood disorders.
DOI: 10.6084/m9.figshare.7512074.v1
title: A general method for designing non-symmetrical composite steel and concrete columns

description: Abstract The study of non-symmetrical composite columns is complex and European and North American standards only approach this issue superficially. In this text, a new proposal is presented for non-symmetrical composite column design subject to biaxial bending and axial compression, based on the compatibility of the deformation method, which considers the nonlinearity of the material with constitutive models according to Brazilian standards and geometric nonlinearity, as well as the equilibrium of the column in the displaced position. As a strategy for solving the general method, use is made of the "fiber element method", and for solving problems involving nonlinear equilibrium equations, the Newton-Raphson method.
DOI: 10.17632/zx3xjyg5hv
title: Factors Influencing Use and Perceptions of Teledermatology - A Mixed Methods Study of 942 participants. (Supplementary Files)

description: Background: The protracted COVID-19 pandemic highlights the need for a sustainable telemedicine practice. 

Objective: To understand patient perceptions toward teledermatology.

Methods: Convergent parallel mixed methods study of 942 dermatology patients or their caregivers between June 2020 and April 2021.

Results: Multivariate regression found that youth, increased computer use, willingness to show body areas over photo/video, perceived quality of teledermatology, demand for social distancing and to reduce commute were associated with willingness to use teledermatology. Willingness to use declined with easing of COVID-19 movement restrictions. 48.5% reported a poorer experience with teledermatology compared to in-person consults.

Qualitative data from 26 interviews showed that willingness to use is influenced by pragmatic considerations, emotional factors, and data privacy concerns. These were moderated by the patient’s perception of disease severity and need for an accurate diagnosis. 

Limitations include lack of data prior to the pandemic and during the initial lockdown period.

Conclusion: The willingness to use teledermatology is influenced by circumstantial factors, IT literacy, views towards teledermatology and factors driving the purpose of consult. The declining willingness to use with the easing pandemic, lower willingness to pay and poorer experience compared to in-person consults highlight the need to optimize this mode of delivery.
DOI: 10.6084/m9.figshare.14691246.v1
title: Raw data: Synthetic algal-bacteria consortia for space-efficient microalgal growth in a simple hydrogel system

description: Raw data for: Synthetic algal-bacteria consortia for space-efficient microalgal growth in a simple hydrogel system
DOI: 10.6084/m9.figshare.16676260.v1
title: Process.csv

description: This dataset includes an example of new feature creation from the original time-series datasets provided. These were obtained based on expert knowledge of the compression process and impact on product quality. <br>
DOI: 10.6084/m9.figshare.5097697.v1
title: Abortion and social support.dta

description: Cross-sectional study conducted in three maternal health centers (Ollantay, Manuel Barreto and Daniel Alcides Carrion) located in Southern Lima, part of the Directorate of Health II, in Peru. Potential participants were women aged between 18 and 25 years, attended in at least one of the three aforementioned maternal health centers between March and May 2013. Study subjects were selected in consecutive order after verifying selection criteria. Illiterate women were excluded as the questionnaire was self-applied. Incomplete questionnaires, i.e. those without important variables, were also excluded from analysis.<br>
DOI: 10.6084/m9.figshare.7818650.v1
title: Additional file 1: of Role of RASEF hypermethylation in cigarette smoke-induced pulmonary arterial smooth muscle remodeling

description: Methylation differences in CpG in PAs of the rats with different treatment (xls). The number 164, 165, 187 and 188 were from the air group, and the last (171,174, 189 and 197) were the smoking group rats. (XLS 1785 kb)
DOI: 10.6084/m9.figshare.8292512.v1
title: Resistance Mapping of the Genus Cyperus in Rio Grande do Sul and Selection Pressure Analysis

description: ABSTRACT: Among the species of the genus Cyperus occurring in paddy rice, C. esculentus, C. difformis and C. iria are the most important, and the latter two are reported as resistant to herbicides in Rio Grande do Sul (RS). The aim of this work was to characterize and mapping the occurrence of resistant plants of the genus Cyperus in areas of paddy rice in RS State, and to analyze the agronomic factors that interfere in the resistance selection. Seeds from individual plants were harvested in the 2014/15 crop, characterized as control failures by the application of acetolactate synthase inhibitors (ALS), totaling 43 samples. At the time of collection, the grower was inquired on aspects related to the management of weeds in the crop. Seeds were germinated in BOD and when seedlings were in two leaves stage they were transplanted into 0.3 L pots containing substrate. When the plants had 4-6 leaves, imazapyr + imazapic was spray at the registration rate. Thirty days after application, control of the tested biotypes was evaluated, converting the data to binary scale, where zero (0) and one (1) correspond to susceptibility and resistance, respectively. The agronomic factors that denote the high selection pressure of resistant biotypes are the consecutive use of Clearfield® technology, the use of higher doses than the registration and the low crop rotation adoption. Although not mentioned as one of the main weeds, it is observed that almost half of the samples collected from plants of the genus Cyperus are resistant to the ALS inhibitors, distributed in almost all the growing regions.
DOI: 10.15126/surreydata.9314282.v1
title: ATI-3615-190807 CTE Figure S1.opju

description: Coefficient of thermal expansion data used in Figure S1
DOI: 10.17632/m3mc2h6zsy
title: Climate Change Impact on Hurricane Storm Surge Hazards in NY/NJ Coastlines using Machine-Learning

description: This data is used to generate the ML models in a paper.
DOI: 10.17632/ykz67bzps7
title: Thermodynamic modeling of Zn containing solution_Kim et al._GCA

description: Saturation indices of possible Zn carbonate phases andaqueous Zn speciation as a function of pH. The calculations were performed using Visual MINTEQ software with thermo database
DOI: 10.6084/m9.figshare.26089389.v1
title: HiGTS_2023s4

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2023s4 contains the data from October 1, 2023 to December 31, 2023.
DOI: 10.6084/m9.figshare.8014991.v1
title: Patient 1 MRI

description: CTs and MRIs were both acquired under radiotherapy immobilization protocols with patients in the treatment position.<br>CT scans were acquired on one of four machine models (LightSpeed RT16, GE Medical Systems, Waukesha, WI, USA; Brilliance 64 or Brilliance Big Bore, Philips Healthcare, Cambridge, MA, USA; SOMATOM Definition Edge, Siemens, Washington D.C., USA) using x-ray tube currents between 208 – 434 mA at 120 kVp. All scans have slice thicknesses of either 2.5 or 3 mm, with 2.5 or 3 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in diameters between 500 – 600 mm. <br>MRI scans were acquired in one of two machine models (Discovery MR750, GE Medical Systems, Waukesha, WI, USA; Ingenia, Philips Healthcare, Cambridge, MA, USA) in 3 Tesla magnetic fields with echo times between 97.72 – 101.82 milliseconds. All scans have slice thicknesses of 2.5 mm, with 2.5 or 4 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in 256 mm diameters.
DOI: 10.6084/m9.figshare.9642803.v1
title: miRnome Fibroblasts HGPS

description: Cq, delta Cq and fold change, of miRNAs in progeria and control fibroblasts<br>
DOI: 10.15468/dl.sry36f
title: Occurrence Download

description: A dataset containing 816435 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lolium perenne L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 816435 records from 3413 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013374-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/ekfbhy
title: CES 2020, Team Module of University of Colorado, Boulder (CUJ)

description: This dataverse contains the data and supporting documents for the CES 2020 Team Module of the University of Colorado, Boulder. This project was supported by the National Science Foundation, Grant Number SES-1948863.

NOTE: Jenny Wolak was affiliated with the University of Colorado, Boulder when this survey was fielded, but now is working at Michigan State University. This is one of two University of Colorado modules in the 2020 CES.