cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30418705.v1
title: Datasets and additional data used in the paper: Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025). “Abstractions for RNA Secondary Structure Analysis.”

description: Datasets and Additional DataThis repository contains the datasets and additional data used in the paper:<b>Michela Quadrini, Emanuela Merelli, and Luca Tesei (2025).</b><br><b>“Abstractions for RNA Secondary Structure Analysis.”</b>Folder: 5S_Ribosomal_RNAThis folder contains the data used for the experiment on <b>264 5S ribosomal RNA (5S rRNA) molecules</b> from the CRW2 database.<b>Subfolder </b><b>Molecules_DBN/</b><br>Contains the secondary structures of the 264 RNAs in dot-bracket notation.<b>Subfolder </b><b>Molecules_Abstractions_DBN/Shape/</b><br>Contains the computed <i>Shape</i> abstractions and a text file with the counts of different shapes.<b>Subfolder </b><b>Molecules_Abstractions_DBN/Core/</b><br>Contains the computed <i>Core</i> abstractions and a text file with the counts of different cores.<b>Subfolder </b><b>Molecules_Abstractions_DBN/Core_Plus/</b><br>Contains the computed <i>Core Plus</i> abstractions and a text file with the counts of different core-plus patterns.Folder: Pseudoknot_MotifsThis folder contains the data used for the experiment on <b>332 RNA pseudoknots</b> from the Pseudobase++ database.Molecules in dot-bracket notation<b>Subfolder </b><b>Molecules_DBN/Pseudoknot_H/</b><br>Contains the secondary structures of the 253 RNAs with H-type pseudoknots.<b>Subfolder </b><b>Molecules_DBN/Pseudoknot_HLout/</b><br>Contains the secondary structures of the 64 RNAs with HL_out-type pseudoknots.<b>Subfolder </b><b>Molecules_DBN/Pseudoknot_HLin/</b><br>Contains the secondary structures of the 4 RNAs with HL_in-type pseudoknots.<b>Subfolder </b><b>Molecules_DBN/Pseudoknot_LL/</b><br>Contains the secondary structures of the 11 RNAs with LL-type pseudoknots.Computed abstractions<b>Subfolder </b><b>Molecules_Abstractions_DBN/Shape/</b><br>Contains the computed <i>Shape</i> abstractions and a text file with the counts of different shapes for each pseudoknot type (H, HL_out, HL_in, LL).<b>Subfolder </b><b>Molecules_Abstractions_DBN/Core/</b><br>Contains the computed <i>Core</i> abstractions and a text file with the counts of different cores for each pseudoknot type (H, HL_out, HL_in, LL).<b>Subfolder </b><b>Molecules_Abstractions_DBN/Core_Plus/</b><br>Contains the computed <i>Core Plus</i> abstractions and a text file with the counts of different core-plus patterns for each pseudoknot type (H, HL_out, HL_in, LL).
DOI: 10.15468/dl.bwmvcj
title: Occurrence Download

description: A dataset containing 851 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Harmonia axyridis",
 "HasCoordinate is true",
 "Country is Spain"
 ]
}

 The dataset includes 851 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050391-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc12djrr
title: CCDC 995154: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djss
title: CCDC 995155: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djtt
title: CCDC 995156: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djvv
title: CCDC 995157: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djww
title: CCDC 995158: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djxx
title: CCDC 995159: Experimental Crystal Structure Determination

description: Related Article: Simplicio González-Montiel, Diego Martínez-Otero, Noemí Andrade-López, José G. Alvarado-Rodríguez, Manuel Carmona-Pichardo, Julián Cruz-Borbolla, Thangarasu Pandiyan, Leslie W. Pineda|2015|Polyhedron|87|181|doi:10.1016/j.poly.2014.11.007
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djyy
title: CCDC 995160: Experimental Crystal Structure Determination

description: Related Article: Giulia Tarantino, Massimiliano Curcio, Andrea Pica, Andrea Carpentieri, Maria E. Cucciolito, Francesco Ruffo, Aldo Vitagliano, Matteo Lega|2014|Eur.J.Inorg.Chem.|2014|4199|doi:10.1002/ejic.201402456
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12cxx8
title: CCDC 994570: Experimental Crystal Structure Determination

description: Related Article: Faouzi Chahdoura, Christian Pradel, Montserrat Gómez|2014|ChemCatChem|6|2929|doi:10.1002/cctc.201402214
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccw3td5
title: CCDC 808027: Experimental Crystal Structure Determination

description: Related Article: Iran Sheikhshoaie, S. Yousef Ebrahimipour, Somayeh Shamsi|2016|Synth.React.Inorg.,Met.-Org.,Nano-Met.Chem.|46|917|doi:10.1080/15533174.2014.989612
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12djzz
title: CCDC 995161: Experimental Crystal Structure Determination

description: Related Article: Shane R. Yost, Jiye Lee, Mark W. B. Wilson, Tony Wu, David P. McMahon, Rebecca R. Parkhurst, Nicholas J. Thompson, Daniel N. Congreve, Akshay Rao, Kerr Johnson, Matthew Y. Sfeir, Moungi G. Bawendi, Timothy M. Swager, Richard H. Friend, Marc A. Baldo, Troy Van Voorhis|2014|Nature Chemistry|6|492|doi:10.1038/nchem.1945
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk01
title: CCDC 995162: Experimental Crystal Structure Determination

description: Related Article: Shane R. Yost, Jiye Lee, Mark W. B. Wilson, Tony Wu, David P. McMahon, Rebecca R. Parkhurst, Nicholas J. Thompson, Daniel N. Congreve, Akshay Rao, Kerr Johnson, Matthew Y. Sfeir, Moungi G. Bawendi, Timothy M. Swager, Richard H. Friend, Marc A. Baldo, Troy Van Voorhis|2014|Nature Chemistry|6|492|doi:10.1038/nchem.1945
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk12
title: CCDC 995163: Experimental Crystal Structure Determination

description: Related Article: Shane R. Yost, Jiye Lee, Mark W. B. Wilson, Tony Wu, David P. McMahon, Rebecca R. Parkhurst, Nicholas J. Thompson, Daniel N. Congreve, Akshay Rao, Kerr Johnson, Matthew Y. Sfeir, Moungi G. Bawendi, Timothy M. Swager, Richard H. Friend, Marc A. Baldo, Troy Van Voorhis|2014|Nature Chemistry|6|492|doi:10.1038/nchem.1945
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk34
title: CCDC 995165: Experimental Crystal Structure Determination

description: Related Article: Martin Grützke , Tiankun Zhao , Timo A. Immel , and Thomas Huhn|2015|Inorg.Chem.|54|6697|doi:10.1021/acs.inorgchem.5b00690
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk45
title: CCDC 995166: Experimental Crystal Structure Determination

description: Related Article: Martin Grützke , Tiankun Zhao , Timo A. Immel , and Thomas Huhn|2015|Inorg.Chem.|54|6697|doi:10.1021/acs.inorgchem.5b00690
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk56
title: CCDC 995167: Experimental Crystal Structure Determination

description: Related Article: Martin Grützke , Tiankun Zhao , Timo A. Immel , and Thomas Huhn|2015|Inorg.Chem.|54|6697|doi:10.1021/acs.inorgchem.5b00690
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk67
title: CCDC 995168: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk78
title: CCDC 995169: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk89
title: CCDC 995170: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dk9b
title: CCDC 995171: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkbc
title: CCDC 995172: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkcd
title: CCDC 995173: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkdf
title: CCDC 995174: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkfg
title: CCDC 995175: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkgh
title: CCDC 995176: Experimental Crystal Structure Determination

description: Related Article: Irene Mendoza, Natalia Curado, Mario Carrasco, Eleuterio Álvarez, Riccardo Peloso, Amor Rodríguez, Ernesto Carmona|2015|Inorg.Chim.Acta|424|120|doi:10.1016/j.ica.2014.07.055
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkhj
title: CCDC 995177: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkjk
title: CCDC 995178: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkkl
title: CCDC 995179: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dklm
title: CCDC 995180: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dkmn
title: CCDC 995181: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dknp
title: CCDC 995182: Experimental Crystal Structure Determination

description: Related Article: Dennis Cao, Michael Hong, Anthea K. Blackburn, Zhichang Liu, James M. Holcroft, J. Fraser Stoddart|2014|Chemical Science|5|4242|doi:10.1039/C4SC00999A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc12dl13
title: CCDC 995194: Experimental Crystal Structure Determination

description: Related Article: Chunhao Yuan, Honglei Liu, Zhenzhen Gao, Leijie Zhou, Yalin Feng, Yumei Xiao, Hongchao Guo|2015|Org.Lett.|17|26|doi:10.1021/ol503169d
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.