cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28358655
title: Is the grass greener on the other side? Phylogeny and biogeography of grass-feeding plant bugs of the genus <i>Collaria</i> Provancher (Hemiptera: Miridae: Mirinae)

description: The grass-feeding plant bug genus <i>Collaria</i> contains important agricultural pest species responsible for significant economic damage to pasture crops in the New World. The genus belongs to Stenodemini (Miridae), with 21 valid species distributed in the Afrotropical, Nearctic, and Neotropical regions, an intriguing distribution for an apparently recently diversified clade associated with grasses. To investigate the evolutionary and biogeographical relationships of <i>Collaria</i> species, a morphological phylogenetic analysis was carried out. The phylogenetic analysis recovered <i>Collaria</i> as monophyletic, with <i>Nabidomiris</i> as its sister group. Within <i>Collaria</i>, two main clades were recovered, one composed exclusively by Afrotropical species, and another by Nearctic and Neotropical species, in addition to one Afrotropical species, <i>C. royi</i>. The biogeographic analysis, using a geographically explicit event model method (GEM), identified various geographic events, including vicariance, sympatry, and founder events. Given the recent diversification of Stenodemini lineages, alternative hypotheses to a Gondwanan origin are proposed. Among them, the vicariant pattern between the Neotropical and the Nearctic + Afrotropical clades is explained by geodispersal, and subsequent vicariance, through a series of large dry land extensions found in the South Atlantic 50 million years ago. The vicariant event between North America and Africa is explained by boreotropical migration, when Africa was connected to Eurasia during the Miocene. Further explanations within the African, Nearctic, and Neotropical clades are provided for the biogeographic patterns recovered. Our results help explain a complex and recent biogeographic history for an important grass-feeding group of plant bugs.
DOI: 10.6084/m9.figshare.28358655.v1
title: Is the grass greener on the other side? Phylogeny and biogeography of grass-feeding plant bugs of the genus <i>Collaria</i> Provancher (Hemiptera: Miridae: Mirinae)

description: The grass-feeding plant bug genus <i>Collaria</i> contains important agricultural pest species responsible for significant economic damage to pasture crops in the New World. The genus belongs to Stenodemini (Miridae), with 21 valid species distributed in the Afrotropical, Nearctic, and Neotropical regions, an intriguing distribution for an apparently recently diversified clade associated with grasses. To investigate the evolutionary and biogeographical relationships of <i>Collaria</i> species, a morphological phylogenetic analysis was carried out. The phylogenetic analysis recovered <i>Collaria</i> as monophyletic, with <i>Nabidomiris</i> as its sister group. Within <i>Collaria</i>, two main clades were recovered, one composed exclusively by Afrotropical species, and another by Nearctic and Neotropical species, in addition to one Afrotropical species, <i>C. royi</i>. The biogeographic analysis, using a geographically explicit event model method (GEM), identified various geographic events, including vicariance, sympatry, and founder events. Given the recent diversification of Stenodemini lineages, alternative hypotheses to a Gondwanan origin are proposed. Among them, the vicariant pattern between the Neotropical and the Nearctic + Afrotropical clades is explained by geodispersal, and subsequent vicariance, through a series of large dry land extensions found in the South Atlantic 50 million years ago. The vicariant event between North America and Africa is explained by boreotropical migration, when Africa was connected to Eurasia during the Miocene. Further explanations within the African, Nearctic, and Neotropical clades are provided for the biogeographic patterns recovered. Our results help explain a complex and recent biogeographic history for an important grass-feeding group of plant bugs.
DOI: 10.6084/m9.figshare.28309734
title: First tabulation and analysis of natural enemies of snail-killing flies (Diptera: Sciomyzidae), their position in the fly/mollusc ecosystem, and implications for use of sciomyzids in biological control

description: In this first tabulation and analysis of natural enemies of Sciomyzidae (snailkilling flies), 218 records are presented for 97 species and morphospecies in 44 genera of parasitoids, predators and pathogens. These represent 27 families in 7 orders attacking 64 of the 548 valid sciomyzid species in 23 of the 60 genera, in all major biogeographical regions, mainly North America and Western Europe. Our objectives are (1) to cast the data on natural enemies of a group of flies, with analysis, into a broad biological perspective; and (2) to provide specific data for selection of biocontrol agents. Parasitoid Hymenoptera are the primary natural enemies, 67 species and morphospecies in 25 genera of egg, larva/pupal and pupal parasitoids having been reared in nature from 24 sciomyzid species in 8 genera. Notably, all of our records of larval/pupal and pupal parasitoids are of rearings from isolated puparia, unlike many of the records of parasitoids of Tephritidae, reared from mass cultures of fruit, in which several species of Tephritidae (and other Diptera) were feeding. Herein we take a broad view of the complex of natural enemies, relating them to the extensive knowledge on the biology of the family, and analyse them in relation to the classification, phylogeny, distribution, habitats, and phenological and behavioural groups of Sciomyzidae. Parasitoid genera in the hymenopterous families Braconidae, Chalcididae, Diapriidae, Ichneumonidae, Pteromalidae and Trichogrammatidae are characterised briefly in regard to geographical distribution, host range, habitats, phenology and other aspects. Background information on Sciomyzidae and keys to the families and genera of parasitoid Hymenoptera attacking Sciomyzidae are included to encourage collection of and research on parasitoid natural enemies. Natural enemies are evaluated as to their impact on the use of Sciomyzidae as biological control agents of disease-carrying freshwater snails and pestiferous terrestrial snails and slugs in fieldcrop and greenhouses.
DOI: 10.6084/m9.figshare.28309734.v1
title: First tabulation and analysis of natural enemies of snail-killing flies (Diptera: Sciomyzidae), their position in the fly/mollusc ecosystem, and implications for use of sciomyzids in biological control

description: In this first tabulation and analysis of natural enemies of Sciomyzidae (snailkilling flies), 218 records are presented for 97 species and morphospecies in 44 genera of parasitoids, predators and pathogens. These represent 27 families in 7 orders attacking 64 of the 548 valid sciomyzid species in 23 of the 60 genera, in all major biogeographical regions, mainly North America and Western Europe. Our objectives are (1) to cast the data on natural enemies of a group of flies, with analysis, into a broad biological perspective; and (2) to provide specific data for selection of biocontrol agents. Parasitoid Hymenoptera are the primary natural enemies, 67 species and morphospecies in 25 genera of egg, larva/pupal and pupal parasitoids having been reared in nature from 24 sciomyzid species in 8 genera. Notably, all of our records of larval/pupal and pupal parasitoids are of rearings from isolated puparia, unlike many of the records of parasitoids of Tephritidae, reared from mass cultures of fruit, in which several species of Tephritidae (and other Diptera) were feeding. Herein we take a broad view of the complex of natural enemies, relating them to the extensive knowledge on the biology of the family, and analyse them in relation to the classification, phylogeny, distribution, habitats, and phenological and behavioural groups of Sciomyzidae. Parasitoid genera in the hymenopterous families Braconidae, Chalcididae, Diapriidae, Ichneumonidae, Pteromalidae and Trichogrammatidae are characterised briefly in regard to geographical distribution, host range, habitats, phenology and other aspects. Background information on Sciomyzidae and keys to the families and genera of parasitoid Hymenoptera attacking Sciomyzidae are included to encourage collection of and research on parasitoid natural enemies. Natural enemies are evaluated as to their impact on the use of Sciomyzidae as biological control agents of disease-carrying freshwater snails and pestiferous terrestrial snails and slugs in fieldcrop and greenhouses.
DOI: 10.6084/m9.figshare.28321980
title: Unravelling the mating system in the pea crab <i>Austinixa leptodactyla</i> (Coelho, 1997) (Decapoda: Brachyura: Pinnotheridae)

description: Brachyuran crabs of the family Pinnotheridae have a phylogenetic history linked to a symbiotic lifestyle. Here, we examined the host-use pattern (ie social organisation), sex ratio, sexual dimorphism and relative growth of the crab <i>Austinixa leptodactyla</i>, a symbiont of the ghost shrimp <i>Neocallichirus maryae</i>. We use these analyses to investigate the <i>A. leptodactyla</i> mating system on the basis that monogamous species occupy host burrows as male–female pairs and have a low degree of sexual dimorphism. To this end, a total of 129 individuals (62 males and 67 females, including 29 brooding females) were retrieved within the burrows of their respective hosts in a population from north-eastern Brazil. Our results show that <i>A. leptodactyla</i> inhabited the host burrows either solitarily (61%) or in pairs (39%). Most of the solitary females (88%) were ovigerous, while the pairs were mainly composed of one male and one female crab, with 13 (65%) of these heterosexual couples including one ovigerous female. Body size of paired crabs of the opposite sex was poorly correlated. The finding of solitary females incubating embryos and the lack of correlation between body size of heterosexual pairs suggest that pair formation is not long term. The sex ratio did not differ significantly from the evenness and no sexual dimorphism was detected between body size or cheliped size of males and females. Body colouration of males was more similar to the sand grains of the beach than that of females. This suggests that males are better adapted than females to roam on the surface of the beach in search of burrows occupied by receptive sexual partners. The observations further support the suggestion that <i>A. leptodactyla</i> is polygamous, but behavioural and histological studies are needed to reveal the details of the polygamous mating system herein inferred for <i>A. leptodactyla</i>.
DOI: 10.6084/m9.figshare.28321980.v1
title: Unravelling the mating system in the pea crab <i>Austinixa leptodactyla</i> (Coelho, 1997) (Decapoda: Brachyura: Pinnotheridae)

description: Brachyuran crabs of the family Pinnotheridae have a phylogenetic history linked to a symbiotic lifestyle. Here, we examined the host-use pattern (ie social organisation), sex ratio, sexual dimorphism and relative growth of the crab <i>Austinixa leptodactyla</i>, a symbiont of the ghost shrimp <i>Neocallichirus maryae</i>. We use these analyses to investigate the <i>A. leptodactyla</i> mating system on the basis that monogamous species occupy host burrows as male–female pairs and have a low degree of sexual dimorphism. To this end, a total of 129 individuals (62 males and 67 females, including 29 brooding females) were retrieved within the burrows of their respective hosts in a population from north-eastern Brazil. Our results show that <i>A. leptodactyla</i> inhabited the host burrows either solitarily (61%) or in pairs (39%). Most of the solitary females (88%) were ovigerous, while the pairs were mainly composed of one male and one female crab, with 13 (65%) of these heterosexual couples including one ovigerous female. Body size of paired crabs of the opposite sex was poorly correlated. The finding of solitary females incubating embryos and the lack of correlation between body size of heterosexual pairs suggest that pair formation is not long term. The sex ratio did not differ significantly from the evenness and no sexual dimorphism was detected between body size or cheliped size of males and females. Body colouration of males was more similar to the sand grains of the beach than that of females. This suggests that males are better adapted than females to roam on the surface of the beach in search of burrows occupied by receptive sexual partners. The observations further support the suggestion that <i>A. leptodactyla</i> is polygamous, but behavioural and histological studies are needed to reveal the details of the polygamous mating system herein inferred for <i>A. leptodactyla</i>.
DOI: 10.6084/m9.figshare.28342656.v1
title: Digging in the sand: new species and records of mesopsammic sea slugs in the Western Mediterranean (Mollusca: Gastropoda)

description: Marine interstitial habitats (mesopsammon) have been understudied due to complications of exploring its millimetric and highly adapted organisms. The restrictive ecological conditions of this neglected habitat include faint light and a limited amount of space. These have forced its fauna, with gastropod molluscs as one of the most common groups, to adapt by reducing body size to minute (often shell-less) vermiform organisms. These usually simplified heterobranch species are hard to collect and problematic to determine, often including cases of cryptic and pseudo-cryptic speciation. Here, we explore the interstitial heterobranch diversity alongside the Spanish and Catalan coast (Western Mediterranean) to shed light on the taxonomy of this group. Among the 15 localities, we have collected 315 specimens directly from coarse samples and associated habitats, belonging to ca. 39 different species, providing live photographs, species identification based on the current taxonomic knowledge, and species delimitations based on newly generated sequences of the cytochrome <i>c</i> oxidase I (<i>COI</i>). Results show the first records for Spain and the Catalan Coast for some of these neglected taxa, thereby reinforcing or expanding its distribution with molecular data. Moreover, two species are described, the lower heterobranch <i>Rhodope salviniplaweni</i> <b>sp. n</b>. and the nudibranch <i>Embletonia mediterranea</i> <b>sp. n</b>. and the cephalaspidean <i>Laona vestita</i> comb. nov. is reassigned to a different family. Overall, this study represents a significant advancement in the taxonomic and biogeographic knowledge of interstitial fauna, highlighting the value of continued research in these underexplored habitats. http://www.zoobank.org/urn:lsid:zoobank.org:pub:10B5A669-99B1-46E7-BBE3-42C36D4B3663
DOI: 10.15468/dl.vkunp9
title: Occurrence Download

description: A dataset containing 146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Austria",
 "TaxonKey is Aporrectodea smaragdina (Rosa, 1892)"
 ]
}

 The dataset includes 146 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018004-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xx5366
title: Occurrence Download

description: A dataset containing 16623 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Magnoliopsida",
 "Country is Central African Republic",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 16623 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018003-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14810907
title: Performance-based design for the retrofit of piled foundations of road and rail bridges subjected to seismic loading: single pile under axial loading in sand
title: Centrifuge tests of single pile under axial loading in sand

description: The main objective of the research project is to develop a rationalized pilegroup retrofit design method, accounting for nonlinear soil-foundation response and allowing for full mobilization of pilegroup moment capacity in a controlled and quantifiable manner. This is achieved by developing: (a) deeper understanding of the mechanisms governing the nonlinear behavior of pilegroups; and (b) innovative techniques for refined assessment of the in-situ state of the existing pilegroup, reducing the related uncertainties: an essential step for rationalized retrofit design. The objectives of the project are achieved by combining: (i) physical modelling in the state-of-the-art centrifuge facilities of the newly-established Center of Excellence in Centrifuge Modelling of ETH Zurich; and (ii) advanced numerical modeling, employing thoroughly validated constitutive models for the soil and for structural elements.

This dataset contains the raw data of a centrifuge campaign on the response of single piles under axial loading in dense sand
DOI: 10.15468/dl.3842xe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amyris rekoi S.F.Blake)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018005-250127130748423/datasets/export for details.
DOI: 10.15468/dl.t8xmy7
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Uganda",
 "Geometry POLYGON((-33.40738 -36.66295,97.40738 -36.66295,97.40738 15.66295,-33.40738 15.66295,-33.40738 -36.66295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Warburgia ugandensis Sprague"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018006-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57745/5yr9dd
title: Am J Physiol Endocrinol Metab_Supplemental Figure S5_revised_depot.pdf

description: Supplemental_Figure_S5
DOI: 10.57745/afsusm
title: Am J Physiol Endocrinol Metab_Supplemental Figure S3 _ revised_depot.pdf

description: Supplemental Figure S3
DOI: 10.57745/b46gsx
title: ReadMe_AJP endo_GDM mothers_E-00396-2024R2_SMUJEC.txt

description: :unav
DOI: 10.57745/bnhbzj
title: Am J Physiol Endocrinol Metab_Supplemental Figure S1_revised_depot.pdf

description: Supplemental Figure S1
DOI: 10.57745/dkluek
title: Am J Physiol Endocrinol Metab_Supplemental Figure S2_revised_R2_13012025.pdf

description: Supplemental Figure S2
DOI: 10.57745/dn3ov6
title: Am J Physiol Endocr Metab_E-00396-2024R2_supplemental material.txt

description: Supplemental Material
DOI: 10.57745/jwixzj
title: Am J Physiol Endocr Metab_Supplemental_Table 1.txt

description: Supplemental Table 1
DOI: 10.57745/mitxkh
title: Am J Physiol Endocrinol Metab_Supplemental Figure S4_revised_depot.pdf

description: Supplemental Figure S4
DOI: 10.57745/18zts4
title: ReadMe_GDM_raw_data_10.57745_RQDFBG.txt

description: :unav
DOI: 10.57745/7npirv
title: P202103_Meres_Plasma_Metabo_Brutes_Lactation_VP01.tab

description: GDM_MILK_mother_plasma_metabolomic_raw data_lactation
DOI: 10.57745/djw4cd
title: P202103_Meres_Plasma_Metabo_Brutes_Gestation_VP01.tab

description: GDM_MILK_mother_plasma_metabolomic_raw_data_gestation
DOI: 10.15468/dl.teytjf
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amyris staminosa Lundell)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018008-250127130748423/datasets/export for details.
DOI: 10.6084/m9.figshare.28304309
title: <i>Aspergillus fumigatus </i>secondary metabolite pyripyropene is important for the dual biofilm formation with <i>Pseudomonas aeruginosa</i>

description: The human pathogenic fungus <i>Aspergillus fumigatus</i> establishes dual biofilm interactions in the lungs with the pathogenic bacterium <i>Pseudomonas aeruginosa</i>. Screening of 21 <i>A. fumigatus </i>null mutants revealed 7 mutants (two GPCRs, three MAPK receptors, a G-alpha protein, and one histidine kinase receptor) with reduced biofilm formation, specifically in the presence of <i>P. aeruginosa</i>. Transcriptional profiling and metabolomics analysis of secondary metabolites produced by one of these mutants, Δ<i>gpaB</i> (<i>gpaB</i> encodes a G-alpha protein), showed GpaB controls the production of several important metabolites for the dual biofilm interaction, including pyripyropene A, a potent inhibitor of mammalian acyl-CoA cholesterol acyltransferase. Deletion of <i>pyr2</i>, encoding a non-reducing polyketide synthase, essential for pyripyropene biosynthesis, showed reduced <i>A. fumigatus </i>Δ<i>pyr2-P. aeruginosa</i> biofilm<i> </i>growth, altered macrophage responses, and attenuated mouse virulence in a chemotherapeutic murine model. We identified pyripyropene as a novel player in the ecology and pathogenic interactions of this important human fungal pathogen.
DOI: 10.6084/m9.figshare.28304309.v2
title: <i>Aspergillus fumigatus </i>secondary metabolite pyripyropene is important for the dual biofilm formation with <i>Pseudomonas aeruginosa</i>

description: The human pathogenic fungus <i>Aspergillus fumigatus</i> establishes dual biofilm interactions in the lungs with the pathogenic bacterium <i>Pseudomonas aeruginosa</i>. Screening of 21 <i>A. fumigatus </i>null mutants revealed 7 mutants (two GPCRs, three MAPK receptors, a G-alpha protein, and one histidine kinase receptor) with reduced biofilm formation, specifically in the presence of <i>P. aeruginosa</i>. Transcriptional profiling and metabolomics analysis of secondary metabolites produced by one of these mutants, Δ<i>gpaB</i> (<i>gpaB</i> encodes a G-alpha protein), showed GpaB controls the production of several important metabolites for the dual biofilm interaction, including pyripyropene A, a potent inhibitor of mammalian acyl-CoA cholesterol acyltransferase. Deletion of <i>pyr2</i>, encoding a non-reducing polyketide synthase, essential for pyripyropene biosynthesis, showed reduced <i>A. fumigatus </i>Δ<i>pyr2-P. aeruginosa</i> biofilm<i> </i>growth, altered macrophage responses, and attenuated mouse virulence in a chemotherapeutic murine model. We identified pyripyropene as a novel player in the ecology and pathogenic interactions of this important human fungal pathogen.
DOI: 10.15468/dl.gsp396
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amyris thyrsiflora Turcz.)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018009-250127130748423/datasets/export for details.
DOI: 10.5281/zenodo.14825004
title: The data in the article: Irrigation and water distribution scheduling model for irrigation districts considering multiple factors.
DOI: 10.5281/zenodo.14825005
title: The data in the article: Irrigation and water distribution scheduling model for irrigation districts considering multiple factors.