DOI: 10.5281/zenodo.17745691
title: Data and code from: 'A Cognitive Framework for Open Science:Insights from Scientific Community in Practices'

description: The dataset contains a total of 7 files, which are as follows:



File 1: 0_original_OS_paper_data_58296.xlsx

File 2: 1_cleaned_OS_paper_data_55517.xlsx

File 3: 2_llm_OS_to_result.py

File 4: 3_OS_llm_result_55485.xlsx

File 5: 4_final_OS_paper_data_55485.xlsx

File 6: 5-BERTopic_modeling.ipynb

File 7: 6-BERTopic_modeling_result.zip


Among these, File 1 contains all the paper data retrieved from Web of Science (Core collection) on July 20, 2025, using the search query (see Table 1), with a total of 58,296 papers. File 2 includes the paper data from File 1 after removing records where the Title or Abstract is empty, totaling 55,517 papers. File 3 consists of the Python code for extracting research questions from paper titles and abstracts using the DeepSeek V3 model. File 4 presents the results of research question extraction from paper titles and abstracts via the DeepSeek V3 model, covering 55,485 papers for which research questions were extracted. File 5 is the merged file of paper data and research question data. File 6 contains the Python code for conducting BERTopic modeling on the research questions. File 7 shows the results of the BERTopic modeling.

Table 1. Retrieval strategy






Component



Retrieval formula





Overall



TI=(“open* scien*” OR “science 2.0” OR “open* academ*” OR “open* research*” OR “open* knowledge*”) OR AK=(“open* scien*” OR “science 2.0” OR “open* academ*” OR “open* research*” OR “open* knowledge*”)





Open scientific knowledge



TI= ((open-source OR open* OR “open* source”) AND (software* OR hardware* OR cod* OR data* OR publication* OR publish* OR journal* OR resource* OR education* OR course* OR standard*)) OR AK=((open-source OR open* OR “open* source”) AND (software* OR hardware* OR cod* OR data* OR publication* OR publish* OR journal* OR resource* OR education* OR course* OR standard*)) OR TI=(”open* access*” OR “public access” OR “preprint” OR “open* source” OR “FAIR data*” OR “FAIR principle” OR ”open* evaluat*” OR ”open* peer review” OR “open* review”) OR AK=(”open* access*” OR “public access” OR “preprint” OR “open* source” OR “FAIR data*” OR “FAIR principle” OR “open* evaluat*” OR “open* peer review” OR “open* review”)





Open science infrastructures



TI=((open* OR shar*) AND (infrastructure* OR platform* OR database* OR repositor* OR lab OR labs OR laboratory)) OR AK=((open* OR ”shar*) AND (infrastructure* OR platform* OR database* OR repositor* OR lab OR labs OR laboratory))





Open engagement of societal actors



TI=((“open* engage*” OR “open* practice*” OR “citizen science” OR “scien* volunteer*”) OR ((crowdfunding OR crowdsourcing) NOT (bussiness* OR financ* OR enterprise* OR company*))) OR AK=((“open* engage*” OR “open* practice*” OR “citizen science” OR “scien* volunteer*”) OR ((crowdfunding OR crowdsourcing) NOT (bussiness* OR financ* OR enterprise* OR company*)))





Open dialogue with other knowledge systems



TI=((dialogue* OR communicat*) AND (“indigenous people*” OR “marginalised scholar*” OR “local communit*” OR multicultural OR cross-cultural) AND knowledge*) OR AK=((dialogue* OR communicat*) AND (“indigenous people*” OR “marginalised scholar*” OR “local communit*” OR multicultural OR cross-cultural) AND knowledge*)