cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7925/drs1.ucdlib_31663
title: 7 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground, constructed 1896.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31665
title: 8 Hawkins Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31667
title: 1 Johnson's Place, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 4063
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31669
title: 9-11 Grafton Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 5 levels above ground, constructed 1926.
description: Dublin City Council, Record of Protected Structures (2010), no. 3242
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.6t7b8/7
title: EVcomplex Supplementary Data: UmuC model

description: A subset of the full EVcomplex supplementary data archive containing the data related to the EVfold de novo prediction of UmuC.
DOI: 10.5061/dryad.977k6/1
title: Multiple sequence alignment for phylogenomic analysis

description: Protein Multiple sequence alignment recovered from Bio-Hal for phylogenetic analysis in Phylip format. There are 70 taxa and more than 46000 positions.
DOI: 10.5061/dryad.977k6/2
title: Phylogenetic tree based on protein super alignment

description: Phylogenetic tree based on protein super alignment constructed in RaxML 8.0. Abbrevations of OTUs are explained in ReadMe file.
DOI: 10.5061/dryad.977k6/4
title: 16S rRNA phylogenetic tree

description: A phylogenetic tree constructed using MrBayes 3.2.2
DOI: 10.5061/dryad.j2n18/1
title: Dataset1

description: Genome-wide in silico analysis of basal translational readthrough. Calculation of readthrough propensity (RTP) of stop codon contexts (SCCs), peroxisomal targeting signals type 1 (PTS) in the extensions. RTP * PTS1 product scores, and other functional elements. Applet for RTP calculation of user-entered SCCs.
DOI: 10.5061/dryad.mr0n8/1
title: Biomass dynamics in free water and biofilm
DOI: 10.5061/dryad.pq6hg/1
title: Nuclear and chloroplast microsatellite genotypes for Pinus pinaster at Fuencaliente (Ciudad Real, Spain)

description: One line per combined nuclear-chloroplast individual genotype, comprising 12 nSSR diploid loci and 6 cpSSR haploid regions. For nSSR, the two alleles at each locus are listed in consecutive columns. Missing data coded with zeros. Needle samples collected in the field. DNA extracted with Invisorb DNA Plant HTS 96 Kit. Electrophoresis of amplified products with LI-COR 4300 DNA Analyzer for cpSSRs, and 3130xL and 3500 Genetic Analyzers (Applied Biosystems) for nSSRs. Fragment size determination through visual inspection using external size markers and reference samples with known allele size for cpSSR, and internal size standard and GeneMapper software (Applied Biosystems) for nSSR.
DOI: 10.5061/dryad.pq6hg/2
title: Nuclear and chloroplast microsatellite genotypes for Pinus sylvestris at Sierra Nevada (Granada, Spain)

description: One line per combined nuclear-chloroplast individual genotype, comprising 10 nSSR diploid loci and 7 cpSSR haploid regions. For nSSR, the two alleles at each locus are listed in consecutive columns. Missing data coded with zeros. Needle samples collected in the field. DNA extracted with Invisorb DNA Plant HTS 96 Kit. Electrophoresis of amplified products with LI-COR 4300 DNA Analyzer for cpSSRs, and 3130xL and 3500 Genetic Analyzers (Applied Biosystems) for nSSRs. Fragment size determination through visual inspection using external size markers and reference samples with known allele size for cpSSR, and internal size standard and GeneMapper software (Applied Biosystems) for nSSR.
DOI: 10.5061/dryad.s2241/1
title: Movie_S1

description: Red deer (Cervus elaphus) consuming Amanita muscaria mushroom in Pinus contorta plantation at Helicopter Hill, Craigieburn, South Island, New Zealand.
DOI: 10.5061/dryad.s2241/2
title: Movie_S2

description: Red deer (Cervus elaphus)  consuming Amanita muscaria mushroom in Pinus contorta plantation at Helicopter Hill, Craigieburn, South Island, New Zealand.
DOI: 10.5061/dryad.s2241/3
title: Movie_S3

description: Brushtail possums (Trichosurus vulpecula) consuming Amanita muscaria mushroom in Pinus contorta plantation at Helicopter Hill, Craigieburn, South Island, New Zealand.
DOI: 10.5061/dryad.s2241/4
title: Movie_S4

description: Brushtail possum (Trichosurus vulpecula) appearing to exhibit aversion behaviour towards Amanita muscaria mushroom in Pinus contorta plantation at Helicopter Hill, Craigieburn, South Island, New Zealand.
DOI: 10.5061/dryad.s2241/5
title: Movie_S5

description: Brushtail possum (Trichosurus vulpecula) consuming Cortinarius sp. mushrooms in mixed beech (Nothofagaceae)–Eucalyptus forest at Helicopter Hill, Craigieburn, South Island, New Zealand.
DOI: 10.5061/dryad.s2241/6
title: SI_text

description: QIIME scripts used to analyse fungal ITS sequences generated from mammal faecal pellets from Craigieburn, South Island, New Zealand.
DOI: 10.7925/drs1.ucdlib_31671
title: 3 Johnson's Place, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31673
title: 4 Johnson's Place, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Rendered facade structure, 2 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31675
title: 12 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork & Blockwork structure, 4 levels above ground, constructed 1850.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31677
title: Nassau Street 34

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Frame structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31679
title: 34-39 Nassau Street, Dublin

description: Consists of 2 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Frame structure, 5 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31682
title: 21 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Blockwork structure, 4 levels above ground, constructed 1928.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31684
title: 45-46 Nassau Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 5805
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31686
title: 47 Nassau Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 4 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31688
title: 24 Grafton Street, Dublin 2, Ireland

description: Consists of 3 orthorectified images of the structure. The orthorectified images have been derived from one or more photographic image that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and other image layers have been extracted and saved in TIFF image files, as well as JPEG files in various resolutions to facilitate inspection.
description: Rendered facade structure, 4 levels above ground, constructed 1862.
description: Dublin City Council, Record of Protected Structures (2010), no. 3245
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.5061/dryad.977k6/3
title: Multiple sequence alignment of 16S rRNA

description: Multiple sequence alignment of 16S rRNA of diverse cyanobacteria with focus on Synechococcus.
DOI: 10.5061/dryad.j1rm6/1
title: Figure_1.R

description: Script to generate plots in Figure 1 B and C.
DOI: 10.5061/dryad.j1rm6/2
title: compare_f_estimators.r

description: Script to generate Figures 2 and S1.
DOI: 10.5061/dryad.j1rm6/3
title: Figures_3_S3.R

description: Script to generate Figures 3 and S3. Requires data files such as Heliconius_autosome_windows_5kb.csv and Heliconius_Zchromosome_windows_5kb.csv. These names are hard-coded into this script, so editing is required to load different files.
DOI: 10.5061/dryad.j1rm6/32
title: README

description: General summary of scripts and commands used in this study.
DOI: 10.5061/dryad.j1rm6/4
title: Figure_4.R

description: Script to generate Figure 4. Requires as input files such as model_files_win10000_s0.01_l5000_r50.alternate_models.dxy.summary.sg.tsv, generated using run_model_combinations.py, shared_ancestry_simulator.R and generate_summary_statistics.R.
DOI: 10.5061/dryad.j1rm6/5
title: Figure_5.R

description: Script to generate Figure 5. Requirees as input files such as model_files_win10000_s0.01_l5000_r50.alternate_models.dxy.summary.sg.tsv, generated using run_model_combinations.py shared_ancestry_simulator.R and generate_summary_statistics.R.
DOI: 10.5061/dryad.j1rm6/6
title: egglib_sliding_windows.py

description: Python script to calculate ABBA BABA statistics, as well as pi and dXY from heliconius whole-genome data. It makes use of the EGGLIB library. Input was a "calls" format file, provided in Martin et al. 2013. Window size is specified with the -w flag, sliding increment with the -i flag and minimum number of sites with the -m flag. The latter is a hard cutoff, and windows with fewer sites are discarded. There is also a soft cutoff between 0 and 1, specified with --minimumExploitableData. The script will output a column called sitesOverMinExD. At a value of 0.5, this would report the number of sites in the window that had genotype calls for at least 50% of the individuals. To analyse autosomes and Z-linked scaffolds separately, the --include and --exclude flags were used, along with the file Hmel1-1_Zupdated_Zscafs.txt, which provides names of all Z-linked scaffolds provided in Martin et al. 2013. For the Z chromosome analysis, ploidy was specified using the --ploidy flag, because there were two females in the dataset of Martin et al. 2013.
DOI: 10.5061/dryad.mr0n8/2
title: Amoeba and ciliate dynamics
DOI: 10.5061/dryad.s2241/10
title: Figure_S4

description: Virtual gel showing RFLP patterns produced by BSrR1 and HpyCH41V restriction enzymes on ITS1f-ITS4 DNA fragments amplified from seedling root tips infected with ectomycorrhizal fungi from faecal pellets in our study.
DOI: 10.5061/dryad.s2241/11
title: Figure_S5

description: Principal components analysis of faecal-pellet pollen assemblages. Circles represent brushtail possum (Trichosurus vulpecula) pellets and triangles represent red deer (Cervus elaphus) pellets. Filled shapes represent pellets that infected seedlings with each respective fungal taxon, and open shapes represent those that did not. Dominant pollen vectors are shown as grey arrows.
DOI: 10.5061/dryad.s2241/12
title: Table_S1

description: Occurrence frequency of fungal taxa identified from 454 sequencing of red deer (Cervus elaphus) and brushtail possum (Trichosurus vulpecula) faecal pellets from Craigieburn, South Island, New Zealand
DOI: 10.5061/dryad.s2241/13
title: Table_S2

description: Identity of RFLP patterns (see Fig. S4) observed for ectomycorrhizal fungi on seedling root tips infected from faecal pellets in our study. Identities were determined by DNA sequencing of representative samples for each pattern
DOI: 10.5061/dryad.s2241/7
title: Figure_S1

description: Percentage occurrence of ectomycorrhizal fungal taxa in red deer (Cervus elaphus) and brushtail possum (Trichosurus vulpecula) faecal pellet samples (n = 14 and 16 respectively) from Craigieburn, South Island, New Zealand, as detected using 454 sequencing.
DOI: 10.5061/dryad.s2241/8
title: Figure_S2

description: Pollen assemblages from faecal pellets of brushtail possums (Trichosurus vulpecula) (n = 17) and red deer (Cervus elaphus) (n = 14) collected from Craigieburn, South Island, New Zealand, between 27 March and 19 May 2012. Circles represent pollen types present at &lt;2.5%.
DOI: 10.5061/dryad.s2241/9
title: Figure_S3

description: Examples of ectomycorrhizal fungal spores from brushtail possum (Trichosurus vulpecula) and red deer (Cervus elaphus) faecal pellets, Craigieburn, South Island, New Zealand. (a) abundant fungal spores on a palynology slide; (b) Octaviania spore; (c) cf. Laccaria spores; (d) Rhizopogon spore?
DOI: 10.7925/drs1.ucdlib_31690
title: 50 Nassau Street, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork & stone structure, 5 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 5807
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31692
title: Powerscourt Townhouse, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Stone structure, 5 levels above ground, constructed 1774.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31694
title: 1 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground, constructed 20th century.
description: Dublin City Council, Record of Protected Structures (2010), no. 179
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31696
title: 28-29 Grafton Street, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: RC frame structure, 4 levels above ground, constructed 1970.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31698
title: 3 Anne Street South, Dublin

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.
DOI: 10.7925/drs1.ucdlib_31700
title: 4 Anne Street South, Dublin 2, Ireland

description: Consists of an orthorectified image of the structure in Adobe PhotoShop (PSD) format. The orthorectified image has been derived from one or more photographic images that are included as layers in the original Adobe PhotoShop (PSD) file. The composite and all other image layers have been extracted and saved in TIFF image files, and JPEG files in various resolutions have been derived from the flattened image layer to facilitate inspection.
description: Brickwork structure, 3 levels above ground.
description: Dublin City Council, Record of Protected Structures (2010), no. 180
description: Funded by an award from the Irish Research Council for Science, Engineering and Technology (IRCSET), Embark Initiative Postgraduate Scholarship, grant identifier RS/2011/435.