cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7392008
title: Additional file 6: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S5. List of significantly differentially expressed genes between the 24 and 48Â h time points for the activated CD8+ T cells with corresponding Bonferroni-corrected P values and log-normalized fold change values. Negative values indicate genes expressed at a higher level in the 48Â h time point. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7392002
title: Additional file 5: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S4. List of G1S related genes correlating with normalized growth rate in FL5.12 cells. Genes from the “cell cycle G1 S phase transition” gene ontology term that showed a significant positive correlation with normalized growth rate in FL5.12 cells (n = 13 genes, as described in Additional file 1: Figure S7) were used to construct this gene list. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7392008.v1
title: Additional file 6: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S5. List of significantly differentially expressed genes between the 24 and 48Â h time points for the activated CD8+ T cells with corresponding Bonferroni-corrected P values and log-normalized fold change values. Negative values indicate genes expressed at a higher level in the 48Â h time point. (XLSX 24Â kb)
DOI: 10.7284/120169
title: Water Temperature data collected during research cruise OC1410B using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7392002.v1
title: Additional file 5: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S4. List of G1S related genes correlating with normalized growth rate in FL5.12 cells. Genes from the “cell cycle G1 S phase transition” gene ontology term that showed a significant positive correlation with normalized growth rate in FL5.12 cells (n = 13 genes, as described in Additional file 1: Figure S7) were used to construct this gene list. (XLSX 8 kb)
DOI: 10.7284/120170
title: Transmissometer data collected during research cruise OC1410B using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391993
title: Additional file 4: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S3. Cell cycle genes significantly correlated with cell mass for L1210 and FL5.12. Genes from the “chromosome segregation” gene ontology term that had a significant positive correlation with cell mass (n = 58 and 31 genes for L1210 and FL5.12 cells, respectively) and genes from the “DNA replication” gene ontology term with a significant negative correlation with cell mass (n = 11 and 8 genes for L1210 and FL5.12 cells, respectively) were used to construct the lists for each cell type. Significance was determined as described in Additional file 1: Figure S4. (XLSX 9 kb)
DOI: 10.7284/120171
title: TSG (Thermosalinograph) data collected during research cruise OC1410B using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391987
title: Additional file 3: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S2. Gene set enrichment reports for all the ranked gene lists presented in Additional fileÂ 2: Table S1. Enrichments were generated using the fgsea tool in R. Only gene sets with a false discovery rate (FDR) value less than 0.1 are included. (XLSX 88Â kb)
DOI: 10.6084/m9.figshare.7391993.v1
title: Additional file 4: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S3. Cell cycle genes significantly correlated with cell mass for L1210 and FL5.12. Genes from the “chromosome segregation” gene ontology term that had a significant positive correlation with cell mass (n = 58 and 31 genes for L1210 and FL5.12 cells, respectively) and genes from the “DNA replication” gene ontology term with a significant negative correlation with cell mass (n = 11 and 8 genes for L1210 and FL5.12 cells, respectively) were used to construct the lists for each cell type. Significance was determined as described in Additional file 1: Figure S4. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7391981
title: Additional file 2: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S1. Gene lists ranked by correlation with either mass or mass-normalized MAR for L1210, FL5.12, CD8+ T cells (24 and 48Â h activations), and BT159 GBM cells (DMSO and RG7388 treated) with corresponding Spearman correlation coefficients. Genes that are either significantly positively or negatively correlated with the biophysical measurement of interest (as described in Additional fileÂ 1: Figure S4) are highlighted in red. (XLSX 3597Â kb)
DOI: 10.6084/m9.figshare.7391987.v1
title: Additional file 3: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S2. Gene set enrichment reports for all the ranked gene lists presented in Additional fileÂ 2: Table S1. Enrichments were generated using the fgsea tool in R. Only gene sets with a false discovery rate (FDR) value less than 0.1 are included. (XLSX 88Â kb)
DOI: 10.7284/120187
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1411A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391981.v1
title: Additional file 2: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S1. Gene lists ranked by correlation with either mass or mass-normalized MAR for L1210, FL5.12, CD8+ T cells (24 and 48Â h activations), and BT159 GBM cells (DMSO and RG7388 treated) with corresponding Spearman correlation coefficients. Genes that are either significantly positively or negatively correlated with the biophysical measurement of interest (as described in Additional fileÂ 1: Figure S4) are highlighted in red. (XLSX 3597Â kb)
DOI: 10.7284/120173
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1411A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120176
title: Fluorometer data collected during research cruise OC1411A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391960
title: Additional file 11: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S10. Table of ingenuity pathway analysis (IPA) results for canonical pathway analysis of genes significantly positively or negatively correlated with normalized MAR in RG7388 or DMSO treated BT159 cells (Additional file 1: Figure S4, Fig. 4, Additional file 1: Figure S10, Methods). The table includes all pathways with an FDR
DOI: 10.6084/m9.figshare.7391960.v1
title: Additional file 11: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S10. Table of ingenuity pathway analysis (IPA) results for canonical pathway analysis of genes significantly positively or negatively correlated with normalized MAR in RG7388 or DMSO treated BT159 cells (Additional file 1: Figure S4, Fig. 4, Additional file 1: Figure S10, Methods). The table includes all pathways with an FDR
DOI: 10.7284/117353
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1411A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391951
title: Additional file 10: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S9. List of mitosis related genes correlating with mass in DMSO treated BT159 GBM cells. Genes from the “mitosis” gene ontology term that showed a significant positive correlation with cell mass in the DMSO treated BT159 GBM cells (n = 29 genes, as described in Additional file 1: Figure S4) were used to construct this gene list. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.7391951.v1
title: Additional file 10: of Linking single-cell measurements of mass, growth rate, and gene expression

description: Table S9. List of mitosis related genes correlating with mass in DMSO treated BT159 GBM cells. Genes from the “mitosis” gene ontology term that showed a significant positive correlation with cell mass in the DMSO treated BT159 GBM cells (n = 29 genes, as described in Additional file 1: Figure S4) were used to construct this gene list. (XLSX 8 kb)
DOI: 10.7284/120177
title: Gyrocompass data collected during research cruise OC1411A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120179
title: Hygrometer data collected during research cruise OC1411A using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391933
title: Additional file 1: of Dual positive and negative control of Chlamydomonas PII signal transduction protein expression by nitrate/nitrite and NO via the components of nitric oxide cycle

description: Table S1. Primers sequence that were used for real time PCR analysis. (XLSX 10â kb)
DOI: 10.6084/m9.figshare.7391933.v1
title: Additional file 1: of Dual positive and negative control of Chlamydomonas PII signal transduction protein expression by nitrate/nitrite and NO via the components of nitric oxide cycle

description: Table S1. Primers sequence that were used for real time PCR analysis. (XLSX 10â kb)
DOI: 10.7284/120178
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1411A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120180
title: Radiometer data collected during research cruise OC1411A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120181
title: Radiometer data collected during research cruise OC1411A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120182
title: Rain Gauge data collected during research cruise OC1411A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120174
title: Singlebeam Echosounder data collected during research cruise OC1411A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120175
title: Singlebeam Echosounder data collected during research cruise OC1411A using a Knudsen 3260 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120183
title: Speedlog data collected during research cruise OC1411A using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120184
title: Water Temperature data collected during research cruise OC1411A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120185
title: Transmissometer data collected during research cruise OC1411A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120186
title: TSG (Thermosalinograph) data collected during research cruise OC1411A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120189
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1412XA using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391840
title: Additional file 2: of Identification of gene expression profiles in myocardial infarction: a systematic review and meta-analysis

description: PMIDs for each article and the excluding reasons. This file provides a detailed list of PMIDs for the articles identified and the reasons for their exclusion. (TXT 3 kb)
DOI: 10.6084/m9.figshare.7391840.v1
title: Additional file 2: of Identification of gene expression profiles in myocardial infarction: a systematic review and meta-analysis

description: PMIDs for each article and the excluding reasons. This file provides a detailed list of PMIDs for the articles identified and the reasons for their exclusion. (TXT 3 kb)
DOI: 10.7284/120188
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1412XA using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119857
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1503A using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119844
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise OC1503A using a Sea-Bird SBE-911+ instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119846
title: Fluorometer data collected during research cruise OC1503A using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119843
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1503A using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119847
title: Gyrocompass data collected during research cruise OC1503A using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391789
title: Additional file 6: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S4. List of genes associate with cps1 cluster in DSM 29614 strain. (XLSX 10 kb)
DOI: 10.7284/119849
title: Hygrometer data collected during research cruise OC1503A using a Vaisala HMT300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391789.v1
title: Additional file 6: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S4. List of genes associate with cps1 cluster in DSM 29614 strain. (XLSX 10 kb)
DOI: 10.7284/119848
title: PTU (Pressure, Temperature, Humidity) data collected during research cruise OC1503A using a Vaisala PTU300 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119850
title: Radiometer data collected during research cruise OC1503A using a RMR Co. PRP instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119851
title: Radiometer data collected during research cruise OC1503A using a Biospherical QSR-2200 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119852
title: Rain Gauge data collected during research cruise OC1503A using a RM Young 50202 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391747
title: Additional file 3: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S3. List of metal resistance genes identified in the DSM 29614 strain genome. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.7391747.v1
title: Additional file 3: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S3. List of metal resistance genes identified in the DSM 29614 strain genome. (XLSX 48 kb)
DOI: 10.7284/119853
title: Speedlog data collected during research cruise OC1503A using a Furuno DS-50 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119854
title: Water Temperature data collected during research cruise OC1503A using a Sea-Bird SBE-38 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/123992
title: Timeserver data collected during research cruise OC1503A using a Microsemi SyncServer S350 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391726
title: Additional file 2: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S2. List of differentially abundant proteins in DSM 29614 strain used for protein functional enrichment analysis. (XLSX 17 kb)
DOI: 10.7284/119855
title: Transmissometer data collected during research cruise OC1503A using a WET Labs C-Star instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391726.v1
title: Additional file 2: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S2. List of differentially abundant proteins in DSM 29614 strain used for protein functional enrichment analysis. (XLSX 17 kb)
DOI: 10.7284/119856
title: TSG (Thermosalinograph) data collected during research cruise OC1503A using a Sea-Bird SBE-45 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391711
title: Additional file 1: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S1. List of genomes of K. oxytoca strains used for comparative genomics. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7391711.v1
title: Additional file 1: of Genomic traits of Klebsiella oxytoca DSM 29614, an uncommon metal-nanoparticle producer strain isolated from acid mine drainages

description: Table S1. List of genomes of K. oxytoca strains used for comparative genomics. (XLSX 10 kb)
DOI: 10.7284/120644
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise OC1503B using a Hawaii UHDAS instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/120633
title: Fluorometer data collected during research cruise OC1503B using a WET Labs WETStar instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391687
title: Additional file 1: of Interactive online application for the prediction, ranking and prioritisation of drug targets in Schistosoma haematobium

description: Table S1. Predicted targets in Schistosoma haematobium that have compounds associated with them, their annotation and individual feature scores/weightings. Table S2. Predicted targets in Schistosoma haematobium without associated drugs, their annotation and individual feature scores/weightings. Table S3. ChEMBL compounds associated with the top five predicted drug targets in Schistosoma haematobium, their chemical properties and drug information. Table S4. DrugBank compounds associated with the top five predicted drug targets in Schistosoma haematobium, their chemical properties and drug information. (XLSX 234 kb)
DOI: 10.6084/m9.figshare.7391687.v1
title: Additional file 1: of Interactive online application for the prediction, ranking and prioritisation of drug targets in Schistosoma haematobium

description: Table S1. Predicted targets in Schistosoma haematobium that have compounds associated with them, their annotation and individual feature scores/weightings. Table S2. Predicted targets in Schistosoma haematobium without associated drugs, their annotation and individual feature scores/weightings. Table S3. ChEMBL compounds associated with the top five predicted drug targets in Schistosoma haematobium, their chemical properties and drug information. Table S4. DrugBank compounds associated with the top five predicted drug targets in Schistosoma haematobium, their chemical properties and drug information. (XLSX 234 kb)
DOI: 10.7284/120631
title: GNSS (Global Navigation Satellite System) data collected during research cruise OC1503B using a Ashtech ADU5 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391672
title: Additional file 5: of Assessing Ghanaâ s eHealth workforce: implications for planning and training

description: A workbook for estimating workload and sufficiency of the HIM cadre using WISN. (XLSX 24Â kb)
DOI: 10.6084/m9.figshare.7391672.v1
title: Additional file 5: of Assessing Ghanaâ s eHealth workforce: implications for planning and training

description: A workbook for estimating workload and sufficiency of the HIM cadre using WISN. (XLSX 24Â kb)
DOI: 10.7284/120634
title: Gyrocompass data collected during research cruise OC1503B using a Sperry MK-37 instrument system onboard the platform RV Oceanus

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7391660
title: Additional file 4: of Assessing Ghanaâ s eHealth workforce: implications for planning and training

description: A workbook for estimating workload and sufficiency of the IT cadre using WISN. (XLSX 23Â kb)
DOI: 10.7910/dvn/ypikun/cdbawd
title: Per31.SWARM.1.3mm.s3.lsb.2.161027.uvfits
DOI: 10.7910/dvn/ypikun/hoqeei
title: Per31.SWARM.1.3mm.s1.lsb.2.161027.uvfits
DOI: 10.7910/dvn/ypikun/mwychb
title: Per31.SWARM.1.3mm.s2.usb.1.161027.uvfits
DOI: 10.7910/dvn/ypikun/n9qgp9
title: Per31.cont1.3mm.usb.161027.uvfits
DOI: 10.7910/dvn/ypikun/ohdpow
title: Per31.SWARM.1.3mm.s2.lsb.2.161027.uvfits
DOI: 10.7910/dvn/ypikun/rknpur
title: Per31.SWARM.1.3mm.s3.lsb.1.161027.uvfits
DOI: 10.7910/dvn/ypikun/tvl9s8
title: Per31.SWARM.1.3mm.s2.lsb.1.161027.uvfits
DOI: 10.7910/dvn/ypikun/vf7m7h
title: Per31.SWARM.1.3mm.s1.usb.1.161027.uvfits
DOI: 10.7910/dvn/ltub0a/9jnjx5
title: Per39.SWARM.1.3mm.s2.usb.160917.uvfits
DOI: 10.7910/dvn/ltub0a/c31ko0
title: Per39.SWARM.1.3mm.s4.lsb.160917.uvfits
DOI: 10.7910/dvn/ltub0a/i57uzk
title: Per39.SWARM.1.3mm.s3.lsb.160917.uvfits