cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/bt66828vrh.1
title: Percolation Testing of Soils for Onsite Wastewater Treatment

description: Falling head percolation (T-value) data from soils across Ireland versus modeled saturated hydraulic conductivity values (ks) from Hyrdus 2D simulations.
DOI: 10.17632/g4gmrwc9kg.1
title: Reported datasets for Mourouga et al. 2022 "Estimation of activity coefficients for aqueous organic redox-flow batteries: Theoretical basis and equations"

description: This data, ordered in Excel files, was compiled manually from historical papers pdf documents (ranging from the 1960s to the 1990s).
Please cite the original papers if you re-use the data in your calculations.
This data, as well as my code, are available at:
https://github.com/Anon75014/Thermodynamics
DOI: 10.17632/5nppzwbkvy.1
title: LINF_300011600

description: mitoribosomal protein mS57
Leishmania infantum (strain JPCM5)
DOI: 10.17632/xxs9y3hcn3.1
title: LINF_300011500

description: mt-SAF28
Leishmania infantum (strain JPCM5)
DOI: 10.17632/hgf69c3gyn.1
title: LINF_300011400

description: histidyl-tRNA synthetase | HisRS
Leishmania infantum (strain JPCM5)
DOI: 10.17632/tss623762h.1
title: LINF_300011300

description: ribosome biogenesis regulatory protein | RRS1
Leishmania infantum (strain JPCM5)
DOI: 10.25403/upresearchdata.20290656
title: Informal dairy value chain actors in Tanzania

description: The datasets contain information used to characterize the value chain actors in Tanzania's dairy value chain and the challenges they face in implementing risk-based food safety regulations. Data underpin the study titled 'Food safety regulation in Tanzania's informal dairy sector: enablers and constraints to alternative policy approaches'.
DOI: 10.25403/upresearchdata.20290656.v1
title: Informal dairy value chain actors in Tanzania

description: The datasets contain information used to characterize the value chain actors in Tanzania's dairy value chain and the challenges they face in implementing risk-based food safety regulations. Data underpin the study titled 'Food safety regulation in Tanzania's informal dairy sector: enablers and constraints to alternative policy approaches'.
DOI: 10.34740/kaggle/dsv/3934279
title: Mahanagar Yatayat Dataset
DOI: 10.7298/2by5-4g96
title: Best practices for instrumenting honey bees
DOI: 10.5517/ccdc.csd.cc2551yc
title: CCDC 2000862: Experimental Crystal Structure Determination

description: Related Article: Danuta Dutczak, Amira Siai, Markus Ströbele, David Enseling, Thomas Jüstel, Hans-Jürgen Meyer|2020|Eur.J.Inorg.Chem.|41|3954|doi:10.1002/ejic.202000683
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25b2rc
title: CCDC 2005692: Experimental Crystal Structure Determination

description: Related Article: Danuta Dutczak, Amira Siai, Markus Ströbele, David Enseling, Thomas Jüstel, Hans-Jürgen Meyer|2020|Eur.J.Inorg.Chem.|41|3954|doi:10.1002/ejic.202000683
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc25b30n
title: CCDC 2005700: Experimental Crystal Structure Determination

description: Related Article: Danuta Dutczak, Amira Siai, Markus Ströbele, David Enseling, Thomas Jüstel, Hans-Jürgen Meyer|2020|Eur.J.Inorg.Chem.|41|3954|doi:10.1002/ejic.202000683
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0thq
title: CCDC 2175533: Experimental Crystal Structure Determination

description: Related Article: Joseph M. Parr, Clarissa Olivar, Thomas Saal, Ralf Haiges, Michael S. Inkpen|2022|Dalton Trans.|51|10558|doi:10.1039/D2DT01706G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c0tjr
title: CCDC 2175534: Experimental Crystal Structure Determination

description: Related Article: Joseph M. Parr, Clarissa Olivar, Thomas Saal, Ralf Haiges, Michael S. Inkpen|2022|Dalton Trans.|51|10558|doi:10.1039/D2DT01706G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20292453
title: Irish case study

description: This data is from photo elication with community members form Leenane and Spiddal on the Irish west coast.
DOI: 10.6084/m9.figshare.20292453.v1
title: Irish case study

description: This data is from photo elication with community members form Leenane and Spiddal on the Irish west coast.
DOI: 10.3886/e175041
title: New perspectives on the contribution of sanitary investments to mortality decline in English cities, 1845-1909: Replication data

description: Health improved in English cities in the last third of the nineteenth century, in tandem with substantial increases in public spending on water supplies and sanitation. However previous efforts to measure the contribution of public expenditures to mortality improvements have been hampered by difficulties in quantifying public health investments, and the lack of mortality data for specifically urban populations. We improve upon the existing evidence base by (1) creating measures of the stock of Urban District sanitary capital, by type, based on capital expenditure flows, rather than loan stocks; (2) using mortality and capital stock data that relate to the same administrative units (Urban Districts); and (3) studying the period 1880-1909 as well as the earlier period from 1845. The stock of sewerage capital was robustly related to improvements in all-cause mortality after 1880. The size of this effect varied with the extent of public investment in water supplies, suggesting complementary between the two assets. For the period 1845-1884 investments in water were associated with declines in infant and child mortality but the effect was much smaller and less precisely estimated in later decades. Our results suggest that improvements in water and sewerage targeted different transmission pathways for faecal-oral diseases. This deposit contains the data and code needed to replicate the results in the paper.
description: Not relevant
description: Presence of Common Scales: The fiscal data are in Pounds. The mortality data are rates.
description: The sample of Urban districts was dictated by availability in the Weekly Returns of the Registrar-General, which reported deaths from a limited set of causes for the largest Urban Districts, from 1870 to 1911 and by the data on water-related loans collated by Harris, B. & Hinde, A., ‘Sanitary investment and the decline of urban mortality in England and Wales, 1817–1914’, History of the Family, 24 (2019), pp. 339-76 in the format required for regression analysis.
description: The data refer to 16 of the largest Urban Districts in England between 1867 and 1910 and to four Urban Districts from 1838 to 1910.<br><br>The data record investment in water and sewerage capital along with information about mortality outcomes. The mortality data correspond to the geographical borders of the urban districts.<br><br>The data are aggregated to five or ten year periods. Smallest Geographic Unit: Urban districts in England
description: other;
DOI: 10.5281/zenodo.6822885
title: Causes and factors of cryogenic extraction biases on isotopes of xylem water

description: Rehydration experiment on plant materials
DOI: 10.5281/zenodo.6822809
title: Causes and factors of cryogenic extraction biases on isotopes of xylem water

description: Rehydration experiment on plant materials
DOI: 10.25573/data.10005248
title: Dataset: Sediment carbon stocks and sequestration rates in the Pacific Northwest region of Washington, USA

description: This data release includes carbon stocks and sequestration rates for seagrass meadows and natural and restored tidal marshes in the Pacific Northwest US. Our studies have 1) estimated organic carbon stocks and sequestration rates for a Z. marina meadow in Padilla Bay, a National Estuarine Research Reserve in Washington, 2) conducted a blue C assessment of restored and natural tidal marshes in the Stillaguamish River estuary in Puget Sound, Washington, and 3) provided an assessment of carbon stocks and sequestration rates from 12 sites across the Snohomish estuary, representing emergent tidal wetland, forested tidal wetland, regenerating emergent wetland, and drained wetland in the Pacific Northwest US. Sediment accretion and carbon accumulation rates were determined with radiometric dating.
DOI: 10.25573/data.10005248.v1
title: Dataset: Sediment carbon stocks and sequestration rates in the Pacific Northwest region of Washington, USA

description: This data release includes carbon stocks and sequestration rates for seagrass meadows and natural and restored tidal marshes in the Pacific Northwest US. Our studies have 1) estimated organic carbon stocks and sequestration rates for a Z. marina meadow in Padilla Bay, a National Estuarine Research Reserve in Washington, 2) conducted a blue C assessment of restored and natural tidal marshes in the Stillaguamish River estuary in Puget Sound, Washington, and 3) provided an assessment of carbon stocks and sequestration rates from 12 sites across the Snohomish estuary, representing emergent tidal wetland, forested tidal wetland, regenerating emergent wetland, and drained wetland in the Pacific Northwest US. Sediment accretion and carbon accumulation rates were determined with radiometric dating.
DOI: 10.25573/serc.10005248.v2
title: Dataset: Sediment carbon stocks and sequestration rates in the Pacific Northwest region of Washington, USA

description: This data release includes carbon stocks and sequestration rates for seagrass meadows and natural and restored tidal marshes in the Pacific Northwest US. Our studies have 1) estimated organic carbon stocks and sequestration rates for a Z. marina meadow in Padilla Bay, a National Estuarine Research Reserve in Washington, 2) conducted a blue C assessment of restored and natural tidal marshes in the Stillaguamish River estuary in Puget Sound, Washington, and 3) provided an assessment of carbon stocks and sequestration rates from 12 sites across the Snohomish estuary, representing emergent tidal wetland, forested tidal wetland, regenerating emergent wetland, and drained wetland in the Pacific Northwest US. Sediment accretion and carbon accumulation rates were determined with radiometric dating.
DOI: 10.5281/zenodo.5786040
title: Data for "Rotational grazing and multispecies herbal leys increase productivity in temperate pastoral systems – a meta-analysis"

description: Supplementary files for systematic review and meta-analysis: "Rotational grazing and multispecies herbal leys increase productivity in temperate pastoral systems – a meta-analysis"
DOI: 10.6084/m9.figshare.20292459.v1
title: Needs assessment in surgical undergraduate teaching in a South Asian cohort; implications for social, cultural and resource based adaptation of learning methods

description: Teaching and learning in higher education has undergone significant transformation during the past few decades. The novel concepts of student centred learning ha been accepted and adopted globally. However the evidence in this subject area is mainly derived from the western population. Research in the recent past has identified the conflicts of implementing these concepts across different cultures. A needs assessment was carried out amongst a cohort of medical undergrduates to regarding their lack of active participation in general in learning activities and small group discussions. Deficiency in language skills (34%), anxiety to make mistakes in public (46%) and reluctance to address the teachers directly (41%) were the leading reasons of lack of active participation. Several structural, resource and time related local factors were identified as reasons for poor contributions for the small group discussions. The student population however was more interested in conceptual learning versus an assessment-oriented teaching. The author discusses the requirement of cultural adaptation of the learning methods plus student orientation for higher education environment to suit socio-economic and cultural background of the locality based on these findings.
DOI: 10.6084/m9.figshare.20292459
title: Needs assessment in surgical undergraduate teaching in a South Asian cohort; implications for social, cultural and resource based adaptation of learning methods

description: Teaching and learning in higher education has undergone significant transformation during the past few decades. The novel concepts of student centred learning ha been accepted and adopted globally. However the evidence in this subject area is mainly derived from the western population. Research in the recent past has identified the conflicts of implementing these concepts across different cultures. A needs assessment was carried out amongst a cohort of medical undergrduates to regarding their lack of active participation in general in learning activities and small group discussions. Deficiency in language skills (34%), anxiety to make mistakes in public (46%) and reluctance to address the teachers directly (41%) were the leading reasons of lack of active participation. Several structural, resource and time related local factors were identified as reasons for poor contributions for the small group discussions. The student population however was more interested in conceptual learning versus an assessment-oriented teaching. The author discusses the requirement of cultural adaptation of the learning methods plus student orientation for higher education environment to suit socio-economic and cultural background of the locality based on these findings.
DOI: 10.5281/zenodo.5786039
title: Data for "Rotational grazing and multispecies herbal leys increase productivity in temperate pastoral systems – a meta-analysis"

description: Supplementary files for systematic review and meta-analysis: "Rotational grazing and multispecies herbal leys increase productivity in temperate pastoral systems – a meta-analysis"
DOI: 10.6084/m9.figshare.20166209
title: Source data for Primary and metastatic tumors exhibit systems-level differences in dependence on mitochondrial respiratory function

description: The Warburg effect, aerobic glycolysis, is a hallmark feature of cancer cells grown in culture. However, the relative roles of glycolysis and respiratory metabolism in supporting in vivo tumor growth and processes such as tumor dissemination and metastatic growth remain poorly understood, particularly on a systems level. Using a CRISPRi mini-library enriched for mitochondrial ribosomal protein and respiratory chain genes in multiple human lung cancer cell lines we analyzed in vivo metabolic requirements in xenograft tumors grown in distinct anatomic contexts. While knockdown of mitochondrial ribosomal protein and respiratory chain genes (mito-respiratory genes) has little impact on growth in vitro, tumor cells depend heavily on these genes when grown in vivo as either flank or primary orthotopic lung tumor xenografts. In contrast, respiratory function is comparatively dispensable for metastatic tumor growth. RNA-Seq and metabolomics analysis of tumor cells expressing individual sgRNAs against mito-respiratory genes indicate overexpression of glycolytic genes and increased sensitivity of glycolytic inhibition compared to control when grown in vitro, but when grown in vivo as primary tumors these cells downregulate glycolytic mechanisms. These studies demonstrate that discrete perturbations of mitochondrial respiratory chain function impact in vivo tumor growth in a context-specific manner with differential impacts on primary and metastatic tumors.
DOI: 10.6084/m9.figshare.20166209.v3
title: Source data for Primary and metastatic tumors exhibit systems-level differences in dependence on mitochondrial respiratory function

description: The Warburg effect, aerobic glycolysis, is a hallmark feature of cancer cells grown in culture. However, the relative roles of glycolysis and respiratory metabolism in supporting in vivo tumor growth and processes such as tumor dissemination and metastatic growth remain poorly understood, particularly on a systems level. Using a CRISPRi mini-library enriched for mitochondrial ribosomal protein and respiratory chain genes in multiple human lung cancer cell lines we analyzed in vivo metabolic requirements in xenograft tumors grown in distinct anatomic contexts. While knockdown of mitochondrial ribosomal protein and respiratory chain genes (mito-respiratory genes) has little impact on growth in vitro, tumor cells depend heavily on these genes when grown in vivo as either flank or primary orthotopic lung tumor xenografts. In contrast, respiratory function is comparatively dispensable for metastatic tumor growth. RNA-Seq and metabolomics analysis of tumor cells expressing individual sgRNAs against mito-respiratory genes indicate overexpression of glycolytic genes and increased sensitivity of glycolytic inhibition compared to control when grown in vitro, but when grown in vivo as primary tumors these cells downregulate glycolytic mechanisms. These studies demonstrate that discrete perturbations of mitochondrial respiratory chain function impact in vivo tumor growth in a context-specific manner with differential impacts on primary and metastatic tumors.
DOI: 10.6084/m9.figshare.20166209.v2
title: Source data for Primary and metastatic tumors exhibit systems-level differences in dependence on mitochondrial respiratory function

description: The Warburg effect, aerobic glycolysis, is a hallmark feature of cancer cells grown in culture. However, the relative roles of glycolysis and respiratory metabolism in supporting in vivo tumor growth and processes such as tumor dissemination and metastatic growth remain poorly understood, particularly on a systems level. Using a CRISPRi mini-library enriched for mitochondrial ribosomal protein and respiratory chain genes in multiple human lung cancer cell lines we analyzed in vivo metabolic requirements in xenograft tumors grown in distinct anatomic contexts. While knockdown of mitochondrial ribosomal protein and respiratory chain genes (mito-respiratory genes) has little impact on growth in vitro, tumor cells depend heavily on these genes when grown in vivo as either flank or primary orthotopic lung tumor xenografts. In contrast, respiratory function is comparatively dispensable for metastatic tumor growth. RNA-Seq and metabolomics analysis of tumor cells expressing individual sgRNAs against mito-respiratory genes indicate overexpression of glycolytic genes and increased sensitivity of glycolytic inhibition compared to control when grown in vitro, but when grown in vivo as primary tumors these cells downregulate glycolytic mechanisms. These studies demonstrate that discrete perturbations of mitochondrial respiratory chain function impact in vivo tumor growth in a context-specific manner with differential impacts on primary and metastatic tumors.
DOI: 10.6084/m9.figshare.19678395
title: CIE Combined Corrected data set.xlsx

description: Color Vision
DOI: 10.6084/m9.figshare.19678395.v1
title: CIE Combined Corrected data set.xlsx

description: Color Vision
DOI: 10.5281/zenodo.6513787
title: Data for "Modelling soil carbon stocks following reduced tillage intensity: a framework to estimate decomposition rate constant modifiers for RothC-26.3, demonstrated in north-west Europe"

description: Dataset of paired observations of conventional tillage (CT) with no tillage (NT) and reduced tillage (RT) from studies in temperate oceanic regions of Western Europe, extracted from a recent systematic review (Jordon et al. preprint, see DOI below). R code of modelling framework to estimate tillage rate modifiers (TRM) for simulating adoption of RT and NT using RothC-26.3, and meta-estimates of TRM across studies.
DOI: 10.5281/zenodo.6818253
title: Molcular Dynamics Data for Therapeutic High Affinity T Cell Receptor Targeting a KRAS G12D Cancer Neoantigen

description: This folder contains the starting structures and input scripts required to simulate the wild-type and G12D KRAS peptide bound TCR-pHLA complexes, as performed in this study. <br> Starting_Structures - This folder contains the amber parameter/topology files used to simulate each system (.prmtop) and the coordinates of the starting structure both as amber coordinate file (.rst) and PDB file (.pdb).<br> MD_Inputs - This folder contains the amber MD inputs used to run the md simulations. <br> MMPBSA_inputs - This folder contains the input files for running MMPBSA with the MMPBSA.py script in amber. The mmpbsa.in script was used for calculating overall binding energy whereas the mmpbsa_decomp.in script was used for calculating the per-residue contribution to binding energy.
DOI: 10.5281/zenodo.6822850
title: MD simulation trajectory of POPE/DOG/CHOL bilayer and related files

description: Simulation trajectory pre-equiblirated POPE/DOG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 POPE, 12 DOG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: https://doi.org/10.1016/j.bbamem.2022.183961
DOI: 10.5281/zenodo.6822849
title: MD simulation trajectory of POPE/DOG/CHOL bilayer and related files

description: Simulation trajectory pre-equiblirated POPE/DOG/CHOL bilayer and related files from all-atom molecular dynamics simulations. Simulations have been performed with GROMACS-2018.7 with Lipid17 forcefield and TIP3P water model. The trajectory is 0-1000 ns, and we have disregarded the first 100 ns in our analysis. The system in the trajectory consists of 74 POPE, 12 DOG, 42 CHOL and 6400 water molecules. Temperature 310 K, pressure 1 bar. Publication: https://doi.org/10.1016/j.bbamem.2022.183961
DOI: 10.24400/802406/fy27-s14k
title: Interball-Auroral HYPERBOLOID : H+ He++ O++ and O+ Moments Spectrograms …

description: This data sets contains 1 hour summary plots of H+, He++, O++ and O+ moments and dynamic spectra from HYPERBOLOID onboard Interball-Auroral.