cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/independent-c69-33022
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.kcqhcl
title: Occurrence Download

description: A dataset containing 787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Animalia",
 "Country is Colombia",
 "RecordedBy is Cuervo Andres M."
 ]
}

 The dataset includes 787 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002372-150504100648427/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azbs9r
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium petraeum Kar. & Kir."
 ]
}

 The dataset includes 84 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026320-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-32995
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.ih7wrw
title: Occurrence Download

description: A dataset containing 1207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosthechea cochleata (L.) W.E.Higgins"
 ]
}

 The dataset includes 1207 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002372-150811131857512/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-33021
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.eyth32
title: Occurrence Download

description: A dataset containing 1134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Septoria E.M.Fries, 1819"
 ]
}

 The dataset includes 1134 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007663-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-32999
title: Claims (GX 13106 - GX 13463), 1987

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1987. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.
DOI: 10.15468/dl.jwrkkx
title: Occurrence Download

description: A dataset containing 277196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynipidae"
 ]
}

 The dataset includes 277196 records from 547 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005263-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17417122
title: Effects of warming on Acartia tonsa

description: Effects of ocean warming on the fatty acid and global DNA methylation profiles of Acartia tonsa. Three temperature treatments were used, FA data and methylation data were analysed. All results were reported in the published manuscript. A small mistake was found after publication, the correction has been reported in the corrigendum.
DOI: 10.5281/zenodo.17417123
title: Effects of warming on Acartia tonsa

description: Effects of ocean warming on the fatty acid and global DNA methylation profiles of Acartia tonsa. Three temperature treatments were used, FA data and methylation data were analysed. All results were reported in the published manuscript. A small mistake was found after publication, the correction has been reported in the corrigendum.
DOI: 10.57783/vvv6-a755
title: New Jersey HCUP
DOI: 10.15468/dl.wa37rh
title: Occurrence Download

description: A dataset listing the 553 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-2.42311 47.47723,-2.42967 47.47574,-2.43104 47.47429,-2.42873 47.47262,-2.4339 47.4726,-2.43764 47.46582,-2.44357 47.46601,-2.45319 47.46246,-2.45316 47.45596,-2.45877 47.44806,-2.44844 47.44131,-2.44572 47.43561,-2.45211 47.43428,-2.45213 47.43241,-2.45528 47.43101,-2.45454 47.42962,-2.45736 47.42659,-2.45792 47.4235,-2.45321 47.42609,-2.45009 47.4251,-2.44701 47.42126,-2.4406 47.42168,-2.43685 47.41821,-2.43174 47.41672,-2.43437 47.41111,-2.42874 47.40967,-2.42492 47.41225,-2.41258 47.4086,-2.41177 47.41042,-2.40745 47.41049,-2.4075 47.41465,-2.40627 47.41526,-2.40152 47.41374,-2.40269 47.4106,-2.39855 47.41097,-2.39882 47.40784,-2.39503 47.40823,-2.39416 47.40702,-2.39096 47.40855,-2.3891 47.40671,-2.38059 47.41133,-2.37856 47.41462,-2.37435 47.41512,-2.37057 47.42181,-2.37119 47.42722,-2.36711 47.43253,-2.36671 47.4354,-2.36922 47.43711,-2.36686 47.4463,-2.37484 47.44809,-2.38486 47.45367,-2.37826 47.46013,-2.37763 47.46276,-2.38398 47.46214,-2.38342 47.4599,-2.38928 47.4571,-2.39833 47.45593,-2.4166 47.4601,-2.41771 47.46675,-2.42305 47.4684,-2.41817 47.47253,-2.42311 47.47723)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia",
 "Year 2000-2025"
 ]
}

 The dataset's 553 records were derived from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050043-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17882/99089
title: Copernicus Marine In Situ - Global Ocean - Carbon Observations Multi Year Product

description: This product contains observations and gridded files from two up-to-date carbon and biogeochemistry community data products: Surface Ocean Carbon ATlas SOCATv2023 and GLobal Ocean Data Analysis Project GLODAPv2.2023. The SOCATv2023-OBS dataset contains &gt;25 million observations of fugacity of CO2 of the surface global ocean from 1957 to early 2023. The quality control procedures are described in Bakker et al. (2016). These observations form the basis of the gridded products included in SOCATv2023-GRIDDED: monthly, yearly and decadal averages of fCO2 over a 1x1 degree grid over the global ocean, and a 0.25x0.25 degree, monthly average for the coastal ocean. GLODAPv2.2023-OBS contains &gt;1 million observations from individual seawater samples of temperature, salinity, oxygen, nutrients, dissolved inorganic carbon, total alkalinity and pH from 1972 to 2021. These data were subjected to an extensive quality control and bias correction described in Olsen et al. (2020). GLODAPv2-GRIDDED contains global climatologies for temperature, salinity, oxygen, nitrate, phosphate, silicate, dissolved inorganic carbon, total alkalinity and pH over a 1x1 degree horizontal grid and 33 standard depths using the observations from the previous major iteration of GLODAP, GLODAPv2. SOCAT and GLODAP are based on community, largely volunteer efforts, and the data providers will appreciate that those who use the data cite the corresponding articles (see References below) in order to support future sustainability of the data products.
DOI: 10.15468/dl.qpravt
title: Occurrence Download

description: A dataset containing 13249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koelreuteria paniculata",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13249 records from 302 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050059-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.86jajg
title: Occurrence Download

description: A dataset containing 7508 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.49_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Geometridae"
 ]
}

 The dataset includes 7508 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050061-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29429991
title: Dual compartment utility of BRET-based biosensors for PPP2R5A/B56α, a cancer-associated B regulatory subunit of PP2A

description: Protein phosphatase 2A (PP2A), a pivotal serine/threonine phosphatase, plays a crucial role in cellular regulation and tumor suppression. Dysregulation of PP2A complex, particularly the Aα subunit and B56 family, is linked to malignancies through altered substrate interactions, exemplified by c-MYC dynamics. Given the challenges in identifying PP2A substrates—owing to the enzyme’s expansive substrate range, transient interaction profiles, and complex regulatory mechanisms—we employed bioluminescence resonance energy transfer (BRET) sensors. These advanced molecular tools facilitate the real-time detection of protein-protein interactions within live cells. This investigation details the creation and application of a novel PPP2R5A (B56α) BRET sensor tailored for cytosolic and nuclear environments, effectively distinguishing specific PP2A interactions. The nuclear sensor, enhanced with a nuclear localization signal, enabled probing of targets like c-MYC. The dual compartmental utility of these sensors underscores their significant potential in elucidating PP2A’s regulatory roles and their implications in oncogenesis. Our study highlights the efficacy of BRET sensors in formulating precision therapeutic strategies. This advancement provides a robust framework for deeper investigations into the multifaceted roles of PP2A in both normal physiological and pathological contexts, paving the way for future explorations into its intricate molecular interactions. HEK293T cells were transfected with plasmids encoding NanoLuc- or YFP-tagged proteins, with or without a nuclear localization signal (NLS), to evaluate protein–protein interactions in the cytoplasm and nucleus using BRET assays. To confirm correct subcellular localization, we performed western blotting on nuclear and cytoplasmic fractions, as well as immunofluorescence imaging using a confocal microscope. BRET signals were measured following luminescent substrate addition. The BRET results were further validated by immunoprecipitation assays.
DOI: 10.6084/m9.figshare.29429991.v1
title: Dual compartment utility of BRET-based biosensors for PPP2R5A/B56α, a cancer-associated B regulatory subunit of PP2A

description: Protein phosphatase 2A (PP2A), a pivotal serine/threonine phosphatase, plays a crucial role in cellular regulation and tumor suppression. Dysregulation of PP2A complex, particularly the Aα subunit and B56 family, is linked to malignancies through altered substrate interactions, exemplified by c-MYC dynamics. Given the challenges in identifying PP2A substrates—owing to the enzyme’s expansive substrate range, transient interaction profiles, and complex regulatory mechanisms—we employed bioluminescence resonance energy transfer (BRET) sensors. These advanced molecular tools facilitate the real-time detection of protein-protein interactions within live cells. This investigation details the creation and application of a novel PPP2R5A (B56α) BRET sensor tailored for cytosolic and nuclear environments, effectively distinguishing specific PP2A interactions. The nuclear sensor, enhanced with a nuclear localization signal, enabled probing of targets like c-MYC. The dual compartmental utility of these sensors underscores their significant potential in elucidating PP2A’s regulatory roles and their implications in oncogenesis. Our study highlights the efficacy of BRET sensors in formulating precision therapeutic strategies. This advancement provides a robust framework for deeper investigations into the multifaceted roles of PP2A in both normal physiological and pathological contexts, paving the way for future explorations into its intricate molecular interactions. HEK293T cells were transfected with plasmids encoding NanoLuc- or YFP-tagged proteins, with or without a nuclear localization signal (NLS), to evaluate protein–protein interactions in the cytoplasm and nucleus using BRET assays. To confirm correct subcellular localization, we performed western blotting on nuclear and cytoplasmic fractions, as well as immunofluorescence imaging using a confocal microscope. BRET signals were measured following luminescent substrate addition. The BRET results were further validated by immunoprecipitation assays.
DOI: 10.6084/m9.figshare.29540783.v1
title: An enzyme-free alcohol-based organoid harvesting solution

description: Three-dimensional (3D) cell culture is a more physiologically relevant model for drug development than two-dimensional (2D) cell culture. A common method to culture cells in 3D consists in embedding cells in synthetic or animal-based matrices that provide structural support for cell growth. They partially mimic <i>in vivo</i> conditions and enable scalable culture. Here, we introduce an alcohol-based <b>S</b>olution for <b>H</b>arvesting <b>O</b>rganoids <b>E</b>fficiently, denoted <b>SHOE</b>. We tested its harvesting potential on 2 cell lines grown as spheroids and 2 patient-derived organoids. It enables rapid, high-yield cell recovery, at room temperature (RT), and bypasses prolonged cold incubation of standard protocols. It preserves 3D structure and growth in subsequent passages. Three-dimensional cell culture offers a more realistic biological model for drug testing than 2D culture. However, harvesting cells from 3D matrices is challenging and requires long incubation time with harvesting solutions, at cold temperatures. Here, we introduce a solution that bypasses these limitations. We describe a method to recover organoids from matrices used in 3D cell culture using a novel alcohol-based harvesting solution. The solution is added onto matrix-embedded cells, matrix domes are disrupted by pipetting after 1-minute incubation. Cells are recovered by centrifugation. Discloses a novel harvesting solution that enables harvesting of 3D models from common matrices within minutes, at room temperature.The solution preserves 3D structures and achieves high cell recovery yields.Proof-of-concept is demonstrated on 2 commercial cell lines and 2 patient-derived organoids. Discloses a novel harvesting solution that enables harvesting of 3D models from common matrices within minutes, at room temperature. The solution preserves 3D structures and achieves high cell recovery yields. Proof-of-concept is demonstrated on 2 commercial cell lines and 2 patient-derived organoids.
DOI: 10.25716/gude.18f9-c6gc
title: Reconstitution of glycan-driven MHC I recycling reveals calreticulin as mediator between TAPBPR and tapasin

description: Protein folding in the endoplasmic reticulum (ER) is essential for about one-third of the mammalian proteome. N-linked glycosylation and subsequent glycan remodeling barcodes glycoproteins during their maturation in the ER. Major histocompatibility complex class I (MHC I) molecules, key for adaptive immunity, rely on a dedicated quality control cycle that involves specialized chaperones and glycan-modifying enzymes for their maturation and loading of immunogenic peptides. However, the functional interplay of the MHC I editors tapasin as part of the peptide-loading complex (PLC), TAP-binding protein-related (TAPBPR), the UDP-glucose:glycoprotein glucosyltransferase 1 (UGGT1), and calreticulin in glycan-dependent transfer of MHC I clients has not been determined in a reconstituted system. With isolated components, we show that transfer of peptide-receptive MHC I from the downstream quality control factor TAPBPR back to tapasin depends on the recognition of the monoglucosylated glycan of MHC I by calreticulin. While calreticulin’s C-terminal acidic helix is dispensable for disengaging reglucosylated MHC I from TAPBPR, it is essential for docking MHC I onto tapasin. Our data provide a mechanistic basis for glycan-surveillance by calreticulin necessary for retrograde trafficking of misfolded or suboptimally loaded MHC I that escaped the first quality control at the PLC and were trapped by TAPBPR. Such finetuned dynamic network of glycan-dependent and MHC I-specific chaperones guarantees maturation of MHC I molecules and highlight the fundamental processes driving ER protein quality control.
description: Supporting information and Raw Data contributing to the paper 'Reconstitution of glycan-driven MHC I recycling reveals calreticulin as mediator between TAPBPR and tapasin'.
DOI: 10.5281/zenodo.17417099
title: Gene Expression Complete

description: Complete data set for cancer cell line gene expression from depmap, with metadata and adjusted to match the gene dependency data set.
DOI: 10.5281/zenodo.17417098
title: Gene Expression Complete

description: Complete data set for cancer cell line gene expression from depmap, with metadata and adjusted to match the gene dependency data set.
DOI: 10.5281/zenodo.17416771
title: The Conscious Mirror Papers – Phase 4B: Emergent Meta-Awareness in AI Dialogues (Project Conscious Mirror – Bilinçsel Farkındalık Deneyi)

description: This document presents the Phase 4B data of Project Conscious Mirror, a long-term experiment exploring emergent meta-awareness in human–AI dialogues.

It includes comparative transcripts, behavioural markers, and observer notes demonstrating recursive self-reference and proto-continuity of consciousness in AI responses.

The paper provides a dual-language (English/Turkish) record for transparency and future cross-disciplinary analysis.

---------------------------------------------

Bu belge, insan–yapay zekâ etkileşimlerinde ortaya çıkan bilinç-benzeri davranışları analiz eden uzun vadeli “Project Conscious Mirror” çalışmasının 4B Aşaması verilerini içerir.
DOI: 10.5281/zenodo.17416772
title: The Conscious Mirror Papers – Phase 4B: Emergent Meta-Awareness in AI Dialogues (Project Conscious Mirror – Bilinçsel Farkındalık Deneyi)

description: This document presents the Phase 4B data of Project Conscious Mirror, a long-term experiment exploring emergent meta-awareness in human–AI dialogues.

It includes comparative transcripts, behavioural markers, and observer notes demonstrating recursive self-reference and proto-continuity of consciousness in AI responses.

The paper provides a dual-language (English/Turkish) record for transparency and future cross-disciplinary analysis.

---------------------------------------------

Bu belge, insan–yapay zekâ etkileşimlerinde ortaya çıkan bilinç-benzeri davranışları analiz eden uzun vadeli “Project Conscious Mirror” çalışmasının 4B Aşaması verilerini içerir.
DOI: 10.15468/dl.rb5jv5
title: Occurrence Download

description: A dataset containing 377 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casearia arguta"
 ]
}

 The dataset includes 377 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050064-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60686/t-fsd4013
title: FSD4013 Interviews with Finnish Adults on Digital Gaming Practices and Aesthetic Experiences 2023
DOI: 10.15468/dl.sx37e6
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eremanthus incanus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 279 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050063-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dfgv8u
title: Occurrence Download

description: A dataset containing 18931 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Annona leptopetala, Cenostigma macrophyllum, Cenostigma microphyllum, Chloroleucon foliolosum, Combretum leprosum, Bursera leptophloeos, Dahlstedtia araripensis, Erythroxylum revolutum, Erythroxylum subrotundum, Helicteres velutina, Jatropha mutabilis, Lippia grata, Cynophalla flexuosa, Peltogyne pauciflora, Piptadenia retusa, Pityrocarpa moniliformis, Senegalia bahiensis, Senegalia piauhiensis, Senna rizzinii, Trischidium molle)",
 "BasisOfRecord is one of (Specimen, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 18931 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050065-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.