cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.el8llr
title: Occurrence Download

description: A dataset containing 5761 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callitriche hermaphroditica L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5761 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000188-150407101314760/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-106208
title: Marine, Los Angeles, Calif., 1942

description: 41 photographs taken in the Whittington studio of a man dressed as a US Marine, Los Angeles, California, 1942 April 13.
DOI: 10.15468/dl.jr45fx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "GenusKey" : [
 "is Swartzia"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006195-240506114902167/datasets/export for details.
DOI: 10.15468/dl.sfrqjy
title: Occurrence Download

description: A dataset containing 5942590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "Country is Brazil",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 5942590 records from 324 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087847-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-50523
title: Hair dressing with music, Southern California, 1933

description: 2 photographs of man dressing woman's hair at beauty parlor, Southern California, 1933. "Subject: Hair dressing with music; Agency: Jaffe; Client: Victor Beauty Parlor, Henry Beauty Parlor; Original Print Order: 1-#1 only; Size: 8x10, 11x14; Finish: gl[ossy], dull buff; Re-order; 1-#1; 2-9-37; Year: 1933" -- on envelope front. "Operator's Report Name: Joe; Original Photographs--Size: 1-8x10; Amount: 3.50; Extra Charges: Jaffe" -- on envelope back.
DOI: 10.25549/whit-c170-106680
title: Sailor, Los Angeles, Calif., 1941

description: 39 photographs of a male model in a sailor suit posing with a letter, laundry bag, a cup of water, and a female model, Los Angeles, California, 1941 December 3. "Sailor #1 to 24 inc[lusive], also 4x5 & other 5x7s" -- on envelope front. This negative envelope indicates that the Whittington studio fulfilled 6 print orders and sold the reproduction rights 3 times for some of these images.
DOI: 10.15468/dl.tvam96
title: Occurrence Download

description: A dataset containing 5133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taxidea taxus (Schreber, 1777)"
 ]
}

 The dataset includes 5133 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087851-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-106214
title: Marine, Los Angeles, Calif., 1942

description: 41 photographs taken in the Whittington studio of a man dressed as a US Marine, Los Angeles, California, 1942 April 13.
DOI: 10.15468/dl.smj4wh
title: Occurrence Download

description: A dataset containing 6770757 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Rosa L., Chrysanthemum L., Hydrangea Gronov. ex L., Dianthus L., Alstroemeria L., Gypsophila L., Ruscus L., Eucalyptus L'Hér., Hypericum L., Limonium Mill.)"
 ]
}

 The dataset includes 6770757 records from 6496 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006082-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19793453.v1
title: Additional file 6 of Modeling zero inflation is not necessary for spatial transcriptomics

description: Additional file 6: Table S6. Database of individual datasets and accompanying citations used throughout this study.
DOI: 10.6084/m9.figshare.19793447
title: Additional file 4 of Modeling zero inflation is not necessary for spatial transcriptomics

description: Additional file 4: Table S4. Mathematical formula for the estimated mean, variance and zero proportion in the four count models that include the Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial models.
DOI: 10.6084/m9.figshare.19793447.v1
title: Additional file 4 of Modeling zero inflation is not necessary for spatial transcriptomics

description: Additional file 4: Table S4. Mathematical formula for the estimated mean, variance and zero proportion in the four count models that include the Poisson, negative binomial, zero-inflated Poisson and zero-inflated negative binomial models.
DOI: 10.6084/m9.figshare.19793453
title: Additional file 6 of Modeling zero inflation is not necessary for spatial transcriptomics

description: Additional file 6: Table S6. Database of individual datasets and accompanying citations used throughout this study.
DOI: 10.15468/qvqhdu
title: Demande d’Autorisation Environnementale pour renouveler l’exploitation d’une carrière calcaire Lieu-dit « Le Bager » - Commune d’Oloron-Sainte-Marie Département des Pyrénées Atlantiques-Diagnostic écologique (donnée mammifère) Carrière Laborde Lurbe-Saint-Christau

description: Inventaire des mammifères (hors chiroptères) observés de 2021 à 2022 par Simethis dans le cadre du projet de renouvellement de carrière. La collecte s'est focalisée sur la recherche des individus et des indices de présence (empreintes, fèces, ...) au sein de milieux favorables.
DOI: 10.34740/kaggle/dsv/7669506
title: Glaucoma Detection
DOI: 10.6084/m9.figshare.20317744
title: Additional file 1 of Gestational heat stress alters skeletal muscle gene expression profiles and vascularity in fetal pigs in a sexually dimorphic manner

description: Additional file 1: Table S1. Full list of the DEG for each pair of comparison.
DOI: 10.6084/m9.figshare.20317744.v1
title: Additional file 1 of Gestational heat stress alters skeletal muscle gene expression profiles and vascularity in fetal pigs in a sexually dimorphic manner

description: Additional file 1: Table S1. Full list of the DEG for each pair of comparison.
DOI: 10.5525/gla.researchdata.1591
title: Child Juries in Literary Prizes

description: This dataset gathers information from different representatives of literary prizes that integrate children and young adults as juries.
DOI: 10.25403/upresearchdata.25215530
title: Analysis of zero-day attacks and ransomware

description: Cybersecurity faces challenges in identifying and mitigating undefined network vulnerabilities, critical for preventing zero-day attacks. The absence of datasets for distinguishing normal versus abnormal network behavior hinders the development of proactive detection strategies. An obstacle in proactive prevention methods is the absence of comprehensive datasets for contrasting normal versus abnormal network behaviours. Such dataset enabling such contrasts would significantly expedite threat anomaly mitigation. The thesis "Ensemble learning and genetic algorithm for the detection of novel network threat anomaly using the UGRansome Dataset"; introduces UGRansome, a dataset for anomaly detection in network traffic. This dataset comprises a comprehensive set of malware features designed for detecting and quantifying zero-day attacks. It was created by integrating similar attributes from both the UGR'16 and ransomware datasets, following a process of development and validation. Malicious behavior is categorized into normal and abnormal patterns, further characterized through supervised learning techniques, which include anomaly, signature, and synthetic signature stratifications. Despite significant advancements in intrusion detection and prevention systems, the need for detecting and quantifying zero-day attacks, including ransomware, persists. Therefore, the development of a specialized analytical approach tailored for quantifying zero-day attacks within cybersecurity datasets is crucial to effectively address the evolving threat landscape posed by advanced persistent threats.
DOI: 10.25403/upresearchdata.25215530.v1
title: Analysis of zero-day attacks and ransomware

description: Cybersecurity faces challenges in identifying and mitigating undefined network vulnerabilities, critical for preventing zero-day attacks. The absence of datasets for distinguishing normal versus abnormal network behavior hinders the development of proactive detection strategies. An obstacle in proactive prevention methods is the absence of comprehensive datasets for contrasting normal versus abnormal network behaviours. Such dataset enabling such contrasts would significantly expedite threat anomaly mitigation. The thesis "Ensemble learning and genetic algorithm for the detection of novel network threat anomaly using the UGRansome Dataset"; introduces UGRansome, a dataset for anomaly detection in network traffic. This dataset comprises a comprehensive set of malware features designed for detecting and quantifying zero-day attacks. It was created by integrating similar attributes from both the UGR'16 and ransomware datasets, following a process of development and validation. Malicious behavior is categorized into normal and abnormal patterns, further characterized through supervised learning techniques, which include anomaly, signature, and synthetic signature stratifications. Despite significant advancements in intrusion detection and prevention systems, the need for detecting and quantifying zero-day attacks, including ransomware, persists. Therefore, the development of a specialized analytical approach tailored for quantifying zero-day attacks within cybersecurity datasets is crucial to effectively address the evolving threat landscape posed by advanced persistent threats.
DOI: 10.6084/m9.figshare.20317788
title: Additional file 15 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 15: Table S15. Prediction of potential targeting viral miRNAs.
DOI: 10.6084/m9.figshare.20317812.v1
title: Additional file 4 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 4: Table S4. Summary of differentially expressed mRNA in DPV infected DEF cells.
DOI: 10.6084/m9.figshare.20317779
title: Additional file 12 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 12: Table S12. KEGG enrichment of trans-regulatory targets of DE lncRNA.
DOI: 10.6084/m9.figshare.20317788.v1
title: Additional file 15 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 15: Table S15. Prediction of potential targeting viral miRNAs.
DOI: 10.6084/m9.figshare.20317812
title: Additional file 4 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 4: Table S4. Summary of differentially expressed mRNA in DPV infected DEF cells.
DOI: 10.6084/m9.figshare.20317779.v1
title: Additional file 12 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 12: Table S12. KEGG enrichment of trans-regulatory targets of DE lncRNA.
DOI: 10.6084/m9.figshare.20317824.v1
title: Additional file 8 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 8: Table S8. Prediction of trans-regulatory targets of lncRNA.
DOI: 10.6084/m9.figshare.20317824
title: Additional file 8 of Differential expression profile and in-silico functional analysis of long noncoding RNA and mRNA in duck embryo fibroblasts infected with duck plague virus

description: Additional file 8: Table S8. Prediction of trans-regulatory targets of lncRNA.
DOI: 10.6084/m9.figshare.13502344
title: Decreased bone marrow regulatory innate lymphoid cells show a distinctive miRNA profiling in aplastic anemia

description: A new regulatory subpopulation of innate lymphoid cells (ILCs), regulatory innate lymphoid cells (ILCregs), has been identified with both innate lymphoid cells and regulatory cells characteristics. The purpose of this study is to explore ILCregs and its associated miRNAs in patients with aplastic anemia (AA) by evaluating ILCregs frequency, associated miRNA quantification, and their significance. Using 4 color combinations of surface and intracellular antibody staining, the CD45+Lin−CD127+IL-10+ ILCregs from 30 healthy donors and 30 patients newly diagnosed with AA were measured by ﬂow cytometry. Bone marrow cells were studied by next-generation sequence miRNAs quantiﬁcation. Our results showed that the frequency of ILCregs in bone marrow cells from healthy donors (HD) and AA patients were 0.703 ± 0.941 and 0.171 ± 0.233%, respectively. The frequencies of ILCregs in AA patients were significantly lower than that in HD (<i>p</i> &lt;0.05). miRNA detection results showed different expression patterns in the AA patient group comparing with HD. Comparing with HD, there were 52 miRNAs up-regulated and 130 miRNAs down-regulated from AA patients. Analysis of miRNAs from ILCregs associated genes demonstrated different miRNAs expression patterns between HD and AA patient. The present study demonstrated the deficiency of ILCregs and differential expression pattern of ILCregs gene-related miRNA in patients with AA. Further studies need to be done to explore the clinical significance of ILCregs and related miRNAs in patients with AA with large samples size and clinical follow-up.
DOI: 10.6084/m9.figshare.13502344.v1
title: Decreased bone marrow regulatory innate lymphoid cells show a distinctive miRNA profiling in aplastic anemia

description: A new regulatory subpopulation of innate lymphoid cells (ILCs), regulatory innate lymphoid cells (ILCregs), has been identified with both innate lymphoid cells and regulatory cells characteristics. The purpose of this study is to explore ILCregs and its associated miRNAs in patients with aplastic anemia (AA) by evaluating ILCregs frequency, associated miRNA quantification, and their significance. Using 4 color combinations of surface and intracellular antibody staining, the CD45+Lin−CD127+IL-10+ ILCregs from 30 healthy donors and 30 patients newly diagnosed with AA were measured by ﬂow cytometry. Bone marrow cells were studied by next-generation sequence miRNAs quantiﬁcation. Our results showed that the frequency of ILCregs in bone marrow cells from healthy donors (HD) and AA patients were 0.703 ± 0.941 and 0.171 ± 0.233%, respectively. The frequencies of ILCregs in AA patients were significantly lower than that in HD (<i>p</i> &lt;0.05). miRNA detection results showed different expression patterns in the AA patient group comparing with HD. Comparing with HD, there were 52 miRNAs up-regulated and 130 miRNAs down-regulated from AA patients. Analysis of miRNAs from ILCregs associated genes demonstrated different miRNAs expression patterns between HD and AA patient. The present study demonstrated the deficiency of ILCregs and differential expression pattern of ILCregs gene-related miRNA in patients with AA. Further studies need to be done to explore the clinical significance of ILCregs and related miRNAs in patients with AA with large samples size and clinical follow-up.
DOI: 10.25502/dqaa-7e05/d
title: Land degradation assessment in Ghana

description: The Sustainable Intensification of the Mixed Farming System Initiative (SIMFS) aims to provide equitable, transformative pathways for improved livelihoods of actors in mixed farming systems through sustainable intensification within target agro-ecologies and socioeconomic settings. Implemented in Bangladesh, Ethiopia, Ghana, Laos PDR, Nepal, and Malawi; this Initiative works with a wide array of partners, including demand, innovation, and scaling partners from national agricultural research and extension systems, universities, local and international NGOs, farmer associations, agricultural administrations, international agricultural research centers, national governments, policymakers, and the private sector.
DOI: 10.6084/m9.figshare.13502152
title: Additional file 5 of Prognostic value and co-expression patterns of metabolic pathways in cancers

description: Additional file 5.
DOI: 10.6084/m9.figshare.13502143
title: Additional file 2 of Prognostic value and co-expression patterns of metabolic pathways in cancers

description: Additional file 2.
DOI: 10.6084/m9.figshare.13502143.v1
title: Additional file 2 of Prognostic value and co-expression patterns of metabolic pathways in cancers

description: Additional file 2.
DOI: 10.6084/m9.figshare.13502152.v1
title: Additional file 5 of Prognostic value and co-expression patterns of metabolic pathways in cancers

description: Additional file 5.
DOI: 10.6084/m9.figshare.17696810
title: Exposure to lead and impaired glucose homeostasis in Chinese adults: a repeated measures study with 5 years of follow-up

description: We prospectively investigated the association between blood lead and glucose homeostasis, and the results suggests negative impacts of lead exposure on glucose homeostasis in general adult population.
DOI: 10.6084/m9.figshare.13502151
title: Additional file 2 of Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

description: Additional file 2: Table S1. Structural variation and synteny between Currot- and Orange Red-haplotype genome assemblies. Table S2: Haplotype-specific genes in Currot versus Orange Red haplotype. Table S3: Haplotype-specific genes in Orange Red versus Currot haplotype. Table S4: 2236 crossovers found in 369 nuclei (Currot-haplotype genome coordinate).
DOI: 10.6084/m9.figshare.13502151.v1
title: Additional file 2 of Gamete binning: chromosome-level and haplotype-resolved genome assembly enabled by high-throughput single-cell sequencing of gamete genomes

description: Additional file 2: Table S1. Structural variation and synteny between Currot- and Orange Red-haplotype genome assemblies. Table S2: Haplotype-specific genes in Currot versus Orange Red haplotype. Table S3: Haplotype-specific genes in Orange Red versus Currot haplotype. Table S4: 2236 crossovers found in 369 nuclei (Currot-haplotype genome coordinate).
DOI: 10.5526/erdr-00000208
title: Native Oyster and associated biodiversity survey data 2016-2018 Blackwater Crouch Roach and Colne MCZ (UoE/KEIFCA)
DOI: 10.6084/m9.figshare.12978486
title: Additional file 3 of Systems pharmacology-based approach to investigate the mechanisms of Danggui-Shaoyao-san prescription for treatment of Alzheimer’s disease

description: Additional file 3: Table S3. The top 20 putative targets for each compound in DSS with known targets.
DOI: 10.6084/m9.figshare.12978486.v1
title: Additional file 3 of Systems pharmacology-based approach to investigate the mechanisms of Danggui-Shaoyao-san prescription for treatment of Alzheimer’s disease

description: Additional file 3: Table S3. The top 20 putative targets for each compound in DSS with known targets.
DOI: 10.6084/m9.figshare.25250560
title: Table S3.xlsx

description: Table S3 includes results from Medini et al 2024 preprint
DOI: 10.6084/m9.figshare.19794296
title: Transcriptional factor 3 binds to sirtuin 1 to activate the Wnt/β-catenin signaling in cervical cancer

description: Transcriptional factor 3 (TCF3, also termed E2A), first reported to exert crucial functions during lymphocyte development, has been revealed to participate in the pathogenesis of human cancers. The aim of this work was to investigate the function of TCF3 in cervical cancer (CC) and the molecular interactions. The bioinformatics prediction suggested that TCF3 was highly expressed in CC and linked to poor prognosis. Increased TCF3 expression was identified in CC cell lines, and its downregulation reduced proliferation and migration of CC cells <i>in vitro</i> as well as growth of xenograft tumors <i>in vivo</i>. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that the TCF-3-related genes and genes showed differential expression between CC and normal tissues were mainly enriched in the Wnt/β-catenin pathway. TCF3 bound to sirtuin 1 (SIRT1) promoter for transcriptional activation, and SIRT1 promoted deacetylation and nuclear translocation of β-catenin in CC. SIRT1 overexpression blocked the role of TCF3 silencing and restored cell proliferation <i>in vitro</i> and tumor growth <i>in vivo</i>. Treatment with XAV-939, a β-catenin inhibitor, significantly suppressed the cell proliferation and tumor growth induced by SIRT1 overexpression. In conclusion, this study demonstrates that TCF3 augments progression of CC by activating SIRT1-mediated β-catenin signaling.
DOI: 10.6084/m9.figshare.19794296.v1
title: Transcriptional factor 3 binds to sirtuin 1 to activate the Wnt/β-catenin signaling in cervical cancer

description: Transcriptional factor 3 (TCF3, also termed E2A), first reported to exert crucial functions during lymphocyte development, has been revealed to participate in the pathogenesis of human cancers. The aim of this work was to investigate the function of TCF3 in cervical cancer (CC) and the molecular interactions. The bioinformatics prediction suggested that TCF3 was highly expressed in CC and linked to poor prognosis. Increased TCF3 expression was identified in CC cell lines, and its downregulation reduced proliferation and migration of CC cells <i>in vitro</i> as well as growth of xenograft tumors <i>in vivo</i>. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analyses showed that the TCF-3-related genes and genes showed differential expression between CC and normal tissues were mainly enriched in the Wnt/β-catenin pathway. TCF3 bound to sirtuin 1 (SIRT1) promoter for transcriptional activation, and SIRT1 promoted deacetylation and nuclear translocation of β-catenin in CC. SIRT1 overexpression blocked the role of TCF3 silencing and restored cell proliferation <i>in vitro</i> and tumor growth <i>in vivo</i>. Treatment with XAV-939, a β-catenin inhibitor, significantly suppressed the cell proliferation and tumor growth induced by SIRT1 overexpression. In conclusion, this study demonstrates that TCF3 augments progression of CC by activating SIRT1-mediated β-catenin signaling.
DOI: 10.6084/m9.figshare.14551425
title: Transcriptome and metabolome profiles of a sex-changing plant Arisaema erubescens to dissect sex determination

description: The transcriptome assembly, unigenes, FPKM value of unigens and functional annotation of Arisaema erubescens
DOI: 10.5281/zenodo.10656411
title: Rotational electron diffraction patterns of mono/tripeptoids and organic semiconductor materials

description: Rotational electron diffraction patterns of mono/tripeptoids and organic semiconductor materials, Ph-BTBT-C10 and anit-BTBTT-C6. Collected with a JEOL CRYO ARM 300 electron microscope operated at an accelerating voltage of 300kV at RIKEN, SPring-8 Center. The data for monopeptoid were recorded on a TVIPS XF416 detector, while those for the other compounds were recorded on a DirectElectron DE64 detector.