cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/kuacad
title: Replication Data for An l0-constrained and l1-regularized estimator for graphical models

description: The dataset includes:
Simulation studies. R scripts and output files for the network structures considered in the paper (random, hub, cluster, band, and scale-free).
Empirical applications. processed datasets and analysis scripts for the two case studies: Gene expression data of Arabidopsis thaliana isoprenoid genes;
Weekly log-returns of Euro Stoxx 50 constituents. Code: R implementation of the SCGlasso algorithm and routines for comparison with alternative estimators.
Algorithmic stability. An additional folder with scripts and results for the stability analysis of the proposed estimator with two different initializations.
DOI: 10.22002/zjhq9-2vr17
title: Agro C1 induction 28C

description: Agro C1, no Ti plasmid, induced at 28 for 24h in liquid AB+AS
description: <strong>Tilt Series Date:</strong> 2014-03-25</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Agro C1, no Ti plasmid, induced at 28 in liquid AB+AS</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-25-10/rawdata/</p>Agro_C1_Pat0010.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-25-10/rawdata/Agro_C1_Pat0010.mrc"
        > <i class="download icon"></i> Download </a></p>

        Agro_C1_Pat0010.rec,  Reconstruction (Pixel Size 0.0 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-25-10/3dimage_49427/Agro_C1_Pat0010.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.p88eej
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla indica",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045831-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/x9hvy-9ew66
title: COS7 tfx CHMP4A and VPS4B(E235Q)

description: Whole cell ECT of COS7 cell expressing CHMP4A and VPS4B(E235Q)
description: <strong>Tilt Series Date:</strong> 2012-03-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Cercopithecus aethiops (monkey, African green)</p>
<strong>Strain:</strong> COS-7 ATCC CRL-1651</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1.5°, constant angular increment, dosage: 60.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> CHMP4A and VPS4B (E235Q) expression constructs provided by W.Sundquist (Utah)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> lipofectamine transfection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-12/rawdata/</p>12mar13_c121_1_Cos74ADN_AT1bt1_0006.mrc,  Tilt Series (Pixel Size 0.9 nm), 561.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12mar13_c121_1_Cos74ADN_AT1bt1_0006_full.rec,  Reconstruction (Pixel Size 1.8 nm), 722.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-03-13-12/3dimage_17797/12mar13_c121_1_Cos74ADN_AT1bt1_0006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1ftw4-s6484
title: Alongum

description: Alongum_periplasmiclayers
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-13/rawdata/</p>AlongLys0015.mrc,  Tilt Series (Pixel Size 0.95 nm), 677.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-13/rawdata/AlongLys0015.mrc"
        > <i class="download icon"></i> Download </a></p>

        AlongLys0015_full.rec,  Reconstruction (Pixel Size 1.95 nm), 309.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-13/3dimage_56746/AlongLys0015_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7b72fa
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla indica",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 66 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045833-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/wsk6a-edm76
title: Agrobacterium tumefaciens

description: C58 wild type
description: <strong>Tilt Series Date:</strong> 2013-07-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Polara</p>
<strong>Collaborators and Roles:</strong> Pat Zabryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> C58 wild type</p>
<strong>Sample Preparation:</strong> 200uM AS, grown on agar + liquid for 2 days</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-2/3dimage_29310/</p>c58_au20002_part121_4.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-2/3dimage_29310/c58_au20002_part121_4.rec"
        > <i class="download icon"></i> Download </a></p>

        c58_au20002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-28-2/rawdata/c58_au20002.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/d4hss-ztp48
title: HUVECs infx pNLBg1I_endptvirus

description: Raw data files of HUVECs infx pNLBg1I_endptvirus
description: <strong>Tilt Series Date:</strong> 2013-11-04</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> pNLGFPBg1I obtained from Irvin Chen (UCLA)</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Whole cells were grown on Au finder grids and infected with pNLGFPBg1I. Sample was frozen after endpoint of virus infection</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-61/rawdata/</p>13nov04_Endptvirus_montage_21x21tgt_0004.mrc,  Tilt Series (Pixel Size 0.56 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-61/rawdata/13nov04_Endptvirus_montage_21x21tgt_0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        13nov04_Endptvirus_montage_21x21tgt_0004_full.rec,  Reconstruction (Pixel Size 2.24 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2013-11-04-61/3dimage_33933/13nov04_Endptvirus_montage_21x21tgt_0004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/vsavw-fkv18
title: Agrobacterium tumefaciens

description: C58 grown on slide
description: <strong>Tilt Series Date:</strong> 2013-10-04</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on a glass slide</p>
<strong>Sample Preparation:</strong> Manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-33/rawdata/</p>c58_slide_2750041.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-33/rawdata/c58_slide_2750041.mrc"
        > <i class="download icon"></i> Download </a></p>

        c58_slide_2750041_full.rec,  Reconstruction (Pixel Size 1.56 nm), 801.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-10-04-33/3dimage_31977/c58_slide_2750041_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xz33c-g4p18
title: Agro_C58

description: Agro_liq_pl_25C
description: <strong>Tilt Series Date:</strong> 2014-09-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> AB media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-09-11-9/rawdata/</p>t220001.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-09-11-9/rawdata/t220001.mrc"
        > <i class="download icon"></i> Download </a></p>

        17_full.rec,  Reconstruction (Pixel Size 2.0 nm), 848.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-09-11-9/3dimage_56650/17_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7f3hx9
title: Occurrence Download

description: A dataset containing 366 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Potentilla indica",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 366 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045834-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/va609-1r383
title: TRIM5-21R delSpry

description: TRIM5-21R delSpry 2D lattice prepared by Barbie Ganser-Pornillos and  Viswanathan Chandrasekaran
description: <strong>Tilt Series Date:</strong> 2012-11-28</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Viswanathan Chandrasekarangrids purified the protein, Barbie Ganser-Pornillos assembled protein into 2D lattice. The sample was was plunge frozen and imaged at Caltech by Cora Woodward</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-28-2/rawdata/</p>12nov28_TRIM5_21R_delSpry_cart2_AT2cBT1_0001.mrc,  Tilt Series (Pixel Size 0.49 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-28-2/rawdata/12nov28_TRIM5_21R_delSpry_cart2_AT2cBT1_0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        12nov28_TRIM5_21R_delSpry_cart2_AT2cBT1_0001_full.rec,  Reconstruction (Pixel Size 1.96 nm), 530.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-28-2/3dimage_24031/12nov28_TRIM5_21R_delSpry_cart2_AT2cBT1_0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/rwg4h-8nk56
title: Pseudoalteromonas Iuteoviolacea MP126

description: Chloroform purification from P Iuteo DvipABhcpI Dbact2
description: <strong>Tilt Series Date:</strong> 2013-07-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Pseudoalteromonas luteoviolacea</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: 10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> purified and processed by Gregor, Collaboration with Newman lab</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Chloroform Purification</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, Yi-Wei1</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-1/rawdata/</p>2013_07_10_mp130_0005.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-1/rawdata/2013_07_10_mp130_0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        2013_07_10_mp130_0005_2k_secs_full.rec,  Reconstruction (Pixel Size 1.31 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2013-07-10-1/3dimage_28898/2013_07_10_mp130_0005_2k_secs_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/r3rby-dym23
title: Agro pJW58

description: wild-type Agro with plasmid-borne VirC1-GFP translational fusion under control of the virB promoter.  Kanamycin-resistant (150 to 300 ug/mL)
description: <strong>Tilt Series Date:</strong> 2014-03-05</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Clay Fuqua</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in AB medium</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-19/rawdata/</p>Agro_pJW58_30004.mrc,  Tilt Series (Pixel Size 0.4 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-19/rawdata/Agro_pJW58_30004.mrc"
        > <i class="download icon"></i> Download </a></p>

        Agro_pJW58_30004_full.rec,  Reconstruction (Pixel Size 1.6 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-03-05-19/3dimage_39737/Agro_pJW58_30004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.du26wc
title: Occurrence Download

description: A dataset containing 1031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudoscorpiones",
 "Year 1999-2001",
 "Continent is Europe",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1031 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045832-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/6gwhc-0g305
title: T. primitia lysozyme digest

description: Raw data files of T. primitia lysozyme digest
description: <strong>Tilt Series Date:</strong> 2012-04-26</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 50.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Wesley Chen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were digested with 5mg/ml of lysozyme for 15min</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-04-26-20/rawdata/</p>treplys0004.mrc,  Tilt Series (Pixel Size 1.9 nm), 842.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-04-26-20/rawdata/treplys0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        treplys0004_full.rec,  Reconstruction (Pixel Size 3.8 nm), 619.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-04-26-20/3dimage_18293/treplys0004_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sxeyd-6fn91
title: MJ007 fil-2

description: cells were exposed to a division inhibitor fil-2
description: <strong>Tilt Series Date:</strong> 2012-03-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-55.0°, 55.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Justin Nodwell</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in 82uM concentration of fil-2 inhibitor for 30min.</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-03-11-6/rawdata/</p>fil20005.mrc,  Tilt Series (Pixel Size 1.9 nm), 842.5 MB  
        
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        fil20005_full.rec,  Reconstruction (Pixel Size 3.8 nm), 825.8 MB  
        
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