cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12895428.v1
title: Contrast-enhanced ultrasound-guided feeding artery ablation as add-on to percutaneous radiofrequency ablation for hypervascular hepatocellular carcinoma with a modified ablative technique and tumor perfusion evaluation

description: To establish a modified strategy of the feeding artery ablation (FAA) procedure as an add-on to percutaneous radiofrequency ablation (RFA) for patients with hypervascular hepatocellular carcinoma (HCC), and to evaluate the outcomes. For this prospective, single-arm study, from June 2014 to August 2016, twenty-five patients with hypervascular HCC, 2–5 cm in diameter were treated by contrast-enhanced ultrasound (CEUS)-guided FAA before conventional RFA. Technical success of FAA and subsequent perfusion change of the tumor were evaluated by CEUS. Technical efficacy and ablation sizes were evaluated by CT/MRI at 1 month. Therapeutic outcomes, including local tumor progression (LTP), overall survival (OS), and recurrence-free survival (RFS) were evaluated using the Kaplan–Meier method. One or two target feeding arteries were visible on CEUS for 52.6% (61/116) of the hypervascular HCCs 2–5 cm in diameter. The technical success rate of the FAA was 100%; 13/25 (52.0%) target tumors were evaluated as complete perfusion response, while 12/25 (48.0%) were evaluated as partial perfusion response. The ablation volume was 41.9 ± 17.5 cm<sup>3</sup> (14.9–78.2 cm<sup>3</sup>) and the ablative safety margin was 8.2 ± 1.9 mm (4–12 mm) at the 1-month evaluation. These parameters did not differ significantly between the complete and partial subgroups. The cumulative rates of LTP at 1-, 2-, and 3-year follow-ups were 0.0%, 4.2% and 4.2%, respectively. The 3-year OS and RFS were 70.3% vs. 59.8%, respectively. There were no treatment-related deaths. Major complications occurred in one patient (4.0%). As an add-on to conventional percutaneous RFA, tailored CEUS-guided FAA can reduce tumor perfusion and provide good local control of HCC.
DOI: 10.6084/m9.figshare.19711105
title: Additional file 3 of SRSF9 promotes colorectal cancer progression via stabilizing DSN1 mRNA in an m6A-related manner

description: Additional file 3: Table S3. Target mRNAs of the SRSF9 protein in POSTAR2.
DOI: 10.6084/m9.figshare.19711105.v1
title: Additional file 3 of SRSF9 promotes colorectal cancer progression via stabilizing DSN1 mRNA in an m6A-related manner

description: Additional file 3: Table S3. Target mRNAs of the SRSF9 protein in POSTAR2.
DOI: 10.6084/m9.figshare.19711108
title: Additional file 4 of SRSF9 promotes colorectal cancer progression via stabilizing DSN1 mRNA in an m6A-related manner

description: Additional file 4: Table S4. The differentially expressed genes (DEGs) between 473 human CRC tissue sample data sets and 41 normal tissue sample data sets in The Cancer Genome Atlas (TCGA) database.
DOI: 10.6084/m9.figshare.19711108.v1
title: Additional file 4 of SRSF9 promotes colorectal cancer progression via stabilizing DSN1 mRNA in an m6A-related manner

description: Additional file 4: Table S4. The differentially expressed genes (DEGs) between 473 human CRC tissue sample data sets and 41 normal tissue sample data sets in The Cancer Genome Atlas (TCGA) database.
DOI: 10.6084/m9.figshare.11846868
title: Additional file 3 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 3: The methylation data of the whole genome.
DOI: 10.6084/m9.figshare.11846868.v1
title: Additional file 3 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 3: The methylation data of the whole genome.
DOI: 10.6084/m9.figshare.11846874
title: Additional file 4 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 4: The predicted genes related to antibiotic resistance.
DOI: 10.6084/m9.figshare.11846874.v1
title: Additional file 4 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 4: The predicted genes related to antibiotic resistance.
DOI: 10.6084/m9.figshare.11846880
title: Additional file 5 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 5: Genes related to putative virulence factors.
DOI: 10.6084/m9.figshare.11846880.v1
title: Additional file 5 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 5: Genes related to putative virulence factors.
DOI: 10.6084/m9.figshare.11846883
title: Additional file 6 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 6: Genes related to bacteria-host interactions.
DOI: 10.6084/m9.figshare.11846883.v1
title: Additional file 6 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 6: Genes related to bacteria-host interactions.
DOI: 10.6084/m9.figshare.11846886
title: Additional file 7 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 7: The predicted genome islands
DOI: 10.6084/m9.figshare.11846886.v1
title: Additional file 7 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 7: The predicted genome islands
DOI: 10.6084/m9.figshare.11846889
title: Additional file 8 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 8: The predicted toxin-antitoxins
DOI: 10.6084/m9.figshare.11846889.v1
title: Additional file 8 of Characterization and whole genome sequencing of a novel strain of Bergeyella cardium related to infective endocarditis

description: Additional file 8: The predicted toxin-antitoxins
DOI: 10.6084/m9.figshare.12895469
title: Supplementary data for manuscript "DNA methylation haplotype block markers efficiently discriminate follicular thyroid carcinoma from follicular adenoma"

description: <b>Supplementary Data
1 </b>Details
of clinical and molecular features in thyroid neoplasms.<b></b>

<b>Supplementary Data 2 </b>DMCs
markers that specific for FTC or FA samples.<b></b>

<b>Supplementary Data 3</b>
Characteristics of candidate methylation markers in identification FTC from FA
samples

<b>Supplementary Data
4 </b>Differentially Methylated in FTC and
GO Analysis Results<b></b>

<b>Supplementary Data
5 </b>Classification of 26 patients
according to their DNA methylation score and pathology

<br>
DOI: 10.6084/m9.figshare.11846955
title: Poly(vinylidene Fluoride) Sandwiched <i>Calotropis Gigantea</i> Fiber: A Reusable Oil Sorbent with High-efficiency

description: A reusable oil sorbent was prepared via a facile phase inversion method by using poly(vinylidene fluoride) (PVDF) to assist the shape formation of <i>Calotropis gigantea</i> fiber (CGF). The resulting PVDF-<i>s</i>-CGF with PVDF:CGF of 3:2 (weight ratio) shows not only high structural stability but also good oil-absorbing capacity (18.81 g/g for carbon tetrachloride). With the water contact angles &gt;129°, PVDF-<i>s</i>-CGF also shows excellent absorption selectivity for the oils. Finally, PVDF-<i>s</i>-CGF presents good reusability, and the absorption percentage is 84.11% for kerosene after 10 cycles. Therefore, PVDF-<i>s</i>-CGF will exhibit a great potential for large-scale application in oil absorption.
DOI: 10.6084/m9.figshare.11846955.v1
title: Poly(vinylidene Fluoride) Sandwiched <i>Calotropis Gigantea</i> Fiber: A Reusable Oil Sorbent with High-efficiency

description: A reusable oil sorbent was prepared via a facile phase inversion method by using poly(vinylidene fluoride) (PVDF) to assist the shape formation of <i>Calotropis gigantea</i> fiber (CGF). The resulting PVDF-<i>s</i>-CGF with PVDF:CGF of 3:2 (weight ratio) shows not only high structural stability but also good oil-absorbing capacity (18.81 g/g for carbon tetrachloride). With the water contact angles &gt;129°, PVDF-<i>s</i>-CGF also shows excellent absorption selectivity for the oils. Finally, PVDF-<i>s</i>-CGF presents good reusability, and the absorption percentage is 84.11% for kerosene after 10 cycles. Therefore, PVDF-<i>s</i>-CGF will exhibit a great potential for large-scale application in oil absorption.
DOI: 10.5281/zenodo.10667323
title: Dataset related to the article "CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline"

description: This record contains raw data related to the article "CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline".

Background and objective: The standard non-invasive imaging technique used to assess the severity and extent of Coronary Artery Disease (CAD) is Coronary Computed Tomography Angiography (CCTA). However, manual grading of each patient’s CCTA according to the CAD-Reporting and Data System (CAD-RADS) scoring is time-consuming and operator-dependent, especially in borderline cases. This work proposes a fully automated, and visually explainable, deep learning pipeline to be used as a decision support system for the CAD screening procedure. The pipeline performs two classification tasks: firstly, identifying patients who require further clinical investigations and secondly, classifying patients into subgroups based on the degree of stenosis, according to commonly used CAD-RADS thresholds.Methods: The pipeline pre-processes multiplanar projections of the coronary arteries, extracted from the original CCTAs, and classifies them using a fine-tuned Multi-Axis Vision Transformer architecture. To emulate the current clinical practice, the model is trained to assign a per-patient score by stacking the bi-dimensional longitudinal cross-sections of the three main coronary arteries along the channel dimension. Furthermore, it generates visually interpretable maps to assess the reliability of the predictions.Results: When run on a database of 1873 three-channel images of 253 patients collected at the Monzino Cardiology Center in Milan, the pipeline obtained an AUC of 0.87 and 0.93 for the two classification tasks, respectively.Conclusion: According to our knowledge, this is the first model trained to assign CAD-RADS scores learning solely from patient scores and not requiring finer imaging annotation steps that are not part of the clinical routine.
DOI: 10.5281/zenodo.10667324
title: Dataset related to the article "CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline"

description: This record contains raw data related to the article "CAD-RADS scoring of coronary CT angiography with Multi-Axis Vision Transformer: A clinically-inspired deep learning pipeline".

Background and objective: The standard non-invasive imaging technique used to assess the severity and extent of Coronary Artery Disease (CAD) is Coronary Computed Tomography Angiography (CCTA). However, manual grading of each patient’s CCTA according to the CAD-Reporting and Data System (CAD-RADS) scoring is time-consuming and operator-dependent, especially in borderline cases. This work proposes a fully automated, and visually explainable, deep learning pipeline to be used as a decision support system for the CAD screening procedure. The pipeline performs two classification tasks: firstly, identifying patients who require further clinical investigations and secondly, classifying patients into subgroups based on the degree of stenosis, according to commonly used CAD-RADS thresholds.Methods: The pipeline pre-processes multiplanar projections of the coronary arteries, extracted from the original CCTAs, and classifies them using a fine-tuned Multi-Axis Vision Transformer architecture. To emulate the current clinical practice, the model is trained to assign a per-patient score by stacking the bi-dimensional longitudinal cross-sections of the three main coronary arteries along the channel dimension. Furthermore, it generates visually interpretable maps to assess the reliability of the predictions.Results: When run on a database of 1873 three-channel images of 253 patients collected at the Monzino Cardiology Center in Milan, the pipeline obtained an AUC of 0.87 and 0.93 for the two classification tasks, respectively.Conclusion: According to our knowledge, this is the first model trained to assign CAD-RADS scores learning solely from patient scores and not requiring finer imaging annotation steps that are not part of the clinical routine.
DOI: 10.6084/m9.figshare.19711223
title: Additional file 3 of Subtractive and differential hybridization molecular analyses of Ceratitis capitata XX/XY versus XX embryos to search for male-specific early transcribed genes

description: Additional file 3: Table S1. BLASTX analysis results of the 24 SSH-MOS clones selected by differential hybridization screening. (XLS 32 KB)
DOI: 10.6084/m9.figshare.19711223.v1
title: Additional file 3 of Subtractive and differential hybridization molecular analyses of Ceratitis capitata XX/XY versus XX embryos to search for male-specific early transcribed genes

description: Additional file 3: Table S1. BLASTX analysis results of the 24 SSH-MOS clones selected by differential hybridization screening. (XLS 32 KB)
DOI: 10.6084/m9.figshare.12895583
title: Isolation and characterization of <i>LoAMS</i> gene in anther development of lily (<i>Lilium</i> oriental hybrids)

description: Lily is one of the most valuable fresh cut flowers in the world. However, pollen pollution brings inconvenience to retailers and consumers. Anther development is a complicated and precise process but much is unknown. In this study, the anther development key gene <i>LoAMS</i> was isolated from <i>Lilium</i> Oriental Hybrids cultivar ‘Siberia’. Phylogenetic tree analysis and multiple sequence alignment showed that LoAMS protein had a typical basic helix–loop–helix domain (bHLH), belonging to the MYC transcription factor family. Furthermore, the subcellular localization experiment revealed that LoAMS was a nucleus protein. Transcriptional activation assays showed LoAMS was a transcriptional activator with the transcriptional activation domain in the last 204 amino acids (338-541aa) of the C-terminal region. The real-time quantitative PCR showed that <i>LoAMS</i> was abundant in lily anthers. Two peak expressions of <i>LoAMS</i> appeared in the anthers of 3-cm and 10-cm flower buds, especially in the microspores of 10-cm flower buds. These data indicate LoAMS is an anther specific transcriptional activator that may contribute to lily molecular breeding in the near future.
DOI: 10.6084/m9.figshare.12895583.v1
title: Isolation and characterization of <i>LoAMS</i> gene in anther development of lily (<i>Lilium</i> oriental hybrids)

description: Lily is one of the most valuable fresh cut flowers in the world. However, pollen pollution brings inconvenience to retailers and consumers. Anther development is a complicated and precise process but much is unknown. In this study, the anther development key gene <i>LoAMS</i> was isolated from <i>Lilium</i> Oriental Hybrids cultivar ‘Siberia’. Phylogenetic tree analysis and multiple sequence alignment showed that LoAMS protein had a typical basic helix–loop–helix domain (bHLH), belonging to the MYC transcription factor family. Furthermore, the subcellular localization experiment revealed that LoAMS was a nucleus protein. Transcriptional activation assays showed LoAMS was a transcriptional activator with the transcriptional activation domain in the last 204 amino acids (338-541aa) of the C-terminal region. The real-time quantitative PCR showed that <i>LoAMS</i> was abundant in lily anthers. Two peak expressions of <i>LoAMS</i> appeared in the anthers of 3-cm and 10-cm flower buds, especially in the microspores of 10-cm flower buds. These data indicate LoAMS is an anther specific transcriptional activator that may contribute to lily molecular breeding in the near future.
DOI: 10.6084/m9.figshare.19711292
title: Additional file 1 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 1: Supplemental Table S1. Differential metabolites in different potatoes.
DOI: 10.6084/m9.figshare.19711292.v1
title: Additional file 1 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 1: Supplemental Table S1. Differential metabolites in different potatoes.
DOI: 10.6084/m9.figshare.19711310.v1
title: Additional file 7 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 7: Supplemental Table S7. Primers for PCR.
DOI: 10.6084/m9.figshare.19711310
title: Additional file 7 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 7: Supplemental Table S7. Primers for PCR.
DOI: 10.6084/m9.figshare.19711295
title: Additional file 2 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 2: Supplemental Table S2. Different expression transcripts.
DOI: 10.6084/m9.figshare.19711295.v1
title: Additional file 2 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 2: Supplemental Table S2. Different expression transcripts.
DOI: 10.6084/m9.figshare.19711298
title: Additional file 3 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 3: Supplemental Table S3. Gene annotation information.
DOI: 10.6084/m9.figshare.19711301
title: Additional file 4 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 4: Supplemental Table S4. LncRNA transcripts.
DOI: 10.6084/m9.figshare.19711298.v1
title: Additional file 3 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 3: Supplemental Table S3. Gene annotation information.
DOI: 10.6084/m9.figshare.19711301.v1
title: Additional file 4 of Anthocyanin regulatory networks in Solanum tuberosum L. leaves elucidated via integrated metabolomics, transcriptomics, and StAN1 overexpression

description: Additional file 4: Supplemental Table S4. LncRNA transcripts.
DOI: 10.6084/m9.figshare.19711327
title: Additional file 1 of Using amino acid features to identify the pathogenicity of influenza B virus

description: Additional file 1. The dataset for influenza B virus.
DOI: 10.6084/m9.figshare.19711327.v1
title: Additional file 1 of Using amino acid features to identify the pathogenicity of influenza B virus

description: Additional file 1. The dataset for influenza B virus.
DOI: 10.6084/m9.figshare.19711381
title: Additional file 5 of Disturbance of serum lipid metabolites and potential biomarkers in the Bleomycin model of pulmonary fibrosis in young mice

description: Additional file 5: The 91 metabolites that differed significantly among Control, M7 and M14.
DOI: 10.6084/m9.figshare.19711381.v1
title: Additional file 5 of Disturbance of serum lipid metabolites and potential biomarkers in the Bleomycin model of pulmonary fibrosis in young mice

description: Additional file 5: The 91 metabolites that differed significantly among Control, M7 and M14.
DOI: 10.6084/m9.figshare.7128485
title: <i>De novo</i> transcriptome combined with spectrophotometry and gas chromatography-mass spectrometer (GC-MS) reveals differentially expressed genes during accumulation of secondary metabolites in purple-leaf tea (<i>Camellia sinensis</i> cv Hongyafoshou)

description: To investigate differences in secondary metabolites and their related molecular mechanisms between purple-leaf tea and green-leaf tea, the transcriptomes and the secondary product profiles of the <i>Camellia sinensis</i> cultivars ‘Hongyafoshou’ (HF) and cultivar ‘Lvyafoshou’ (LF) were analysed and compared using GC-MS and spectrophotometric methods. The contents of anthocyanins, carotenoids, and total catechins were higher in HF than in LF. In total, 8,406 differentially expressed genes (DEGs) between HF and LF were identified. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed that the flavonoids, carotenoids and terpenoids metabolic pathways were highly enriched with DEGs. Differences in the expression of DEGs involved in these three pathways might be responsible for the high accumulation of secondary metabolites in HF. The small miRNA miR529 plays regulatory roles in these secondary metabolic pathways. The sensory quality of purple-leaf tea is higher than that of green-leaf tea, and these results from the combination of flavonoids, carotenoids, and terpenoids biosynthesis. Our study provides further insights into the molecular mechanisms underlying differences in secondary metabolite accumulation between HF and LF.
DOI: 10.6084/m9.figshare.14992774
title: Additional file 1 of In situ transplantation of adipose-derived stem cells via photoactivation improves glucose metabolism in obese mice

description: Additional file 1: Table S1. The normal hASCs CM (conditional medium) were identified in the comparative analyses.
DOI: 10.15468/dl.4bx7ab
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Country is one of (Spain, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ceratocapnos heterocarpa Durand",
 "Year 1950-2025"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021894-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-56085
title: Redemption tidings, vol. 37, nos. 1-52, 1 Jan. - 22 Dec. 1961

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.