cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12320735.v1
title: Diamond annotation

description: p { margin-bottom: 0.25cm; direction: ltr; line-height: 120%; text-align: left; orphans: 2; widows: 2 } a:link { color: #0000ff } Annotation list for <i>Calanus finmarchicus</i> reference transcriptome using DIAMOND<sup>3</sup>. Contigs were aligned with DIAMOND??<sup>3</sup> on NR (2019-09-29), Swissprot and Trembl (2018-12) to retrieve corresponding best annotations. An annotation matrix was then generated by selecting the best hit for each database if: i) the percent of the query length covered by the alignment was higher than 60% ; ii) the percent of the subject length covered by the alignment was higher than 40%; iii) the percent of identity of the alignment was higher than 40%. File <b>diamond_annotation_206k.tsv </b>is the annotation list for <i>Calanus finmarchicus</i> reference transcriptome using DIAMOND<sup>3</sup> (36,274 contigs with an annotation in at least one database out of the 206,012). File <b>diamond_annotation_76k.tsv </b>is the annotation list for the 76,550 contigs expressed with more than 1 CPM in the RNA sequencing Bioproject PRJNA628886 using DIAMOND<sup>3</sup> (22,527 contigs with an annotation in at least one database out of the 76,550). <br> <sup>3</sup>DIAMOND: version v0.9.22, parameters: -f 6 qseqid qlen qcovhsp pident score evalue length sseqid slen stitle. <i>Ref: Buchfink, B., Xie, C. & Huson, D. H. Fast and sensitive protein alignment using DIAMOND. Nat. Methods 12, 59–60 (2015).</i> Related to bioproject: https://www.ncbi.nlm.nih.gov/bioproject/PRJNA628886
DOI: 10.5281/zenodo.2650147
title: 102 hpf medaka embryos in 96 well plate (4 embryo/well) - brightfield - 2X magnification - ACQUIFER Imaging Machine

description: Dataset originates from: Gierten, J., Pylatiuk, C., Hammouda, O. T., Schock, C., Stegmaier, J., Wittbrodt, J., Gehrig, J. and Loosli, F. (2020). <strong>Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions</strong>. Sci Rep <em>10</em>, 2046, doi:10.1038/s41598-020-58563-w. Used as benchmark dataset for Multi-Template-Matching by Thomas and Gehrig See implementation in Fiji https://github.com/LauLauThom/MultipleTemplateMatching and in KNIME https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Contacts: j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de, jakob.gierten(at)cos.uni-heidelberg.de
DOI: 10.5281/zenodo.2650146
title: 102 hpf medaka embryos in 96 well plate (4 embryo/well) - brightfield - 2X magnification - ACQUIFER Imaging Machine

description: Dataset originates from: Gierten, J., Pylatiuk, C., Hammouda, O. T., Schock, C., Stegmaier, J., Wittbrodt, J., Gehrig, J. and Loosli, F. (2020). <strong>Automated high-throughput heartbeat quantification in medaka and zebrafish embryos under physiological conditions</strong>. Sci Rep <em>10</em>, 2046, doi:10.1038/s41598-020-58563-w. Used as benchmark dataset for Multi-Template-Matching by Thomas and Gehrig See implementation in Fiji https://github.com/LauLauThom/MultipleTemplateMatching and in KNIME https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Contacts: j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de, jakob.gierten(at)cos.uni-heidelberg.de
DOI: 10.5281/zenodo.2650162
title: 3dpf zebrafish larvae, 96 well plate,Tg(wt1b:EGFP), dorsal view, ACQUIFER Imaging Machine

description: Datasets originate from internal test runs at ACQUIFER on the Imaging Machine (see also application note on "The ACQUIFER PlateViewer: A tool for visualizing high content screening data and supervised feedback microscopy") The datasets contain images acquired from 96 <em>Tg(wt1b:EGFP)</em> embryos at 3 dpf aligned in agarose cavities generated with 3d printed orientation tools (Wittbrodt, Jonas N., Urban Liebel, and Jochen Gehrig. "Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing." <em>BMC biotechnology</em> 14.1 (2014): 36.): - 2x, 4x, 10x views - for each well (e.g. <em>A001</em>) a multi-color z-stack was acquired, with N z-slices (SL<em>NNN</em>) in two channels: BF (CO<em>6</em>) and GFP (CO<em>3</em>) Example file name containing metadata: -<strong><em>A001-</em></strong>-PO01--LO001--<em><strong>CO3</strong></em>--<em><strong>SL001</strong></em>--PX32500--PW0100--IN0100--TM281--X014580--Y011262--Z210710--T0200256066--WE00001.tif Used also as benchmark dataset for Multi-Template Matching by Thomas, LSV and Gehrig, J See implementation in Fiji https://github.com/LauLauThom/MultipleTemplateMatching and in KNIME https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Contact: j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de <strong>Ethic statement</strong> The work presented does not involve work with animals according to German and European<br> legislation. All experiments have been performed at stages prior to the legal onset of animal life.<br> To obtain zebrafish embryos and larvae, fish were maintained in closed stocks at Heidelberg University.<br> Zebrafish husbandry and experiments are under the institutional control of the Universities animal<br> welfare agency. All the zebrafish husbandry and experimental procedures were performed in<br> accordance with the German animal welfare standards (Tierschutzgesetz §11, Abs. 1, Nr. 1, husbandry<br> permit number 35-9185.64/BH Wittbrodt) and in accordance with German and European Union animal<br> welfare guidelines. The fish facility is under the supervision of the local representative of the animal<br> welfare agency.
DOI: 10.5281/zenodo.2650161
title: 3dpf zebrafish larvae, 96 well plate,Tg(wt1b:EGFP), dorsal view, ACQUIFER Imaging Machine

description: Datasets originate from internal test runs at ACQUIFER on the Imaging Machine (see also application note on "The ACQUIFER PlateViewer: A tool for visualizing high content screening data and supervised feedback microscopy") The datasets contain images acquired from 96 <em>Tg(wt1b:EGFP)</em> embryos at 3 dpf aligned in agarose cavities generated with 3d printed orientation tools (Wittbrodt, Jonas N., Urban Liebel, and Jochen Gehrig. "Generation of orientation tools for automated zebrafish screening assays using desktop 3D printing." <em>BMC biotechnology</em> 14.1 (2014): 36.): - 2x, 4x, 10x views - for each well (e.g. <em>A001</em>) a multi-color z-stack was acquired, with N z-slices (SL<em>NNN</em>) in two channels: BF (CO<em>6</em>) and GFP (CO<em>3</em>) Example file name containing metadata: -<strong><em>A001-</em></strong>-PO01--LO001--<em><strong>CO3</strong></em>--<em><strong>SL001</strong></em>--PX32500--PW0100--IN0100--TM281--X014580--Y011262--Z210710--T0200256066--WE00001.tif Used also as benchmark dataset for Multi-Template Matching by Thomas, LSV and Gehrig, J See implementation in Fiji https://github.com/LauLauThom/MultipleTemplateMatching and in KNIME https://github.com/LauLauThom/MultipleTemplateMatching-KNIME Contact: j.gehrig(at)acquifer.de, l.thomas(at)acquifer.de <strong>Ethic statement</strong> The work presented does not involve work with animals according to German and European<br> legislation. All experiments have been performed at stages prior to the legal onset of animal life.<br> To obtain zebrafish embryos and larvae, fish were maintained in closed stocks at Heidelberg University.<br> Zebrafish husbandry and experiments are under the institutional control of the Universities animal<br> welfare agency. All the zebrafish husbandry and experimental procedures were performed in<br> accordance with the German animal welfare standards (Tierschutzgesetz §11, Abs. 1, Nr. 1, husbandry<br> permit number 35-9185.64/BH Wittbrodt) and in accordance with German and European Union animal<br> welfare guidelines. The fish facility is under the supervision of the local representative of the animal<br> welfare agency.
DOI: 10.5519/qd.pjxbx4ye
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (256 records)
DOI: 10.5281/zenodo.3965956
title: ALMA Titan wind velocity maps for CH3CN, HC3N and HNC (derived from observations on August 2016 and May 2017)

description: These FITS files contain wind velocities (in m/s) as a function of angular offset (in RA/dec.) from the center of Titan's disk, derived from ALMA observations of CH3CN, HC3N and HNC in August 2016 and May 2017. We followed the method of Lellouch et al. (2019) to determine radial velocities (along the line of sight) for each gas as a function of spatial coordinate in the ALMA images. This involved extracting individual spectra from the data cubes and fitting the emission lines with Gaussians to determine their Doppler shifts.
DOI: 10.5281/zenodo.3965955
title: ALMA Titan wind velocity maps for CH3CN, HC3N and HNC (derived from observations on August 2016 and May 2017)

description: These FITS files contain wind velocities (in m/s) as a function of angular offset (in RA/dec.) from the center of Titan's disk, derived from ALMA observations of CH3CN, HC3N and HNC in August 2016 and May 2017. We followed the method of Lellouch et al. (2019) to determine radial velocities (along the line of sight) for each gas as a function of spatial coordinate in the ALMA images. This involved extracting individual spectra from the data cubes and fitting the emission lines with Gaussians to determine their Doppler shifts.
DOI: 10.5281/zenodo.3965930
title: ALMA Titan image cubes for CH3CN, HC3N and HNC observed August 2016 and May 2017

description: These 3D FITS files contain spectral line emission flux from Titan (in Janskys per beam) as a function of RA, dec. and frequency, observed using Atacama Large Millimeter/submillimeter Array (ALMA). ALMA observations of Titan were obtained on 2017-05-08 and 2017-05-16 (as part of ALMA program 2016.A.00014.S; PI: Cordiner) and on 2016-08-18 and 2016-08-19 (as part of ALMA program 2015.1.01023.S; PI: Gurwell). The HNC (J=4-3), HC3N (J=40-39) and CH3CN (J=19-18) transitions were observed in 2017, whereas the HNC (J=4-3), HC3N (J=39-38) and CH3CN (J=19-18) were observed in 2016. The raw observations were calibrated using standard scripts supplied by the observatory. The resulting measurement sets were continuum-subtracted using low-order polynomial fits to the line-free spectral regions adjacent to our lines of interest. The data were then imaged and cleaned (deconvolved) using the tclean algorithm in CASA 5.6. This routine implicitly corrects for the time-variability of Titan's position and radial velocity with respect to the observer, so the resulting image cubes are in the rest frame of Titan's center-of-mass. To facilitate meaningful intercomparisons, accounting for Titan's varying Geocentric distance, the 2016 and 2017 datasets were convolved to common circular beam dimensions, as projected in the plane of the sky. The image cubes were then cropped to isolate the emission lines of interest.
DOI: 10.5281/zenodo.3965929
title: ALMA Titan image cubes for CH3CN, HC3N and HNC observed August 2016 and May 2017

description: These 3D FITS files contain spectral line emission flux from Titan (in Janskys per beam) as a function of RA, dec. and frequency, observed using Atacama Large Millimeter/submillimeter Array (ALMA). ALMA observations of Titan were obtained on 2017-05-08 and 2017-05-16 (as part of ALMA program 2016.A.00014.S; PI: Cordiner) and on 2016-08-18 and 2016-08-19 (as part of ALMA program 2015.1.01023.S; PI: Gurwell). The HNC (J=4-3), HC3N (J=40-39) and CH3CN (J=19-18) transitions were observed in 2017, whereas the HNC (J=4-3), HC3N (J=39-38) and CH3CN (J=19-18) were observed in 2016. The raw observations were calibrated using standard scripts supplied by the observatory. The resulting measurement sets were continuum-subtracted using low-order polynomial fits to the line-free spectral regions adjacent to our lines of interest. The data were then imaged and cleaned (deconvolved) using the tclean algorithm in CASA 5.6. This routine implicitly corrects for the time-variability of Titan's position and radial velocity with respect to the observer, so the resulting image cubes are in the rest frame of Titan's center-of-mass. To facilitate meaningful intercomparisons, accounting for Titan's varying Geocentric distance, the 2016 and 2017 datasets were convolved to common circular beam dimensions, as projected in the plane of the sky. The image cubes were then cropped to isolate the emission lines of interest.
DOI: 10.21974/h50w-fk91
title: Lizards of the World, volume 1 (Geckos)

description: Supplementary information for the book “Lizards of the World” (volume 1), to be published by Taylor and Francis in 2021. Over time, the supplement will replace the printed book as this is getting out of date.
DOI: 10.5523/bris.3tv15i98pr7gq2asvudjfmzpvo
title: Data from CHOP study (09-2020)

description: Objectives: To examine knowledge and attitudes towards HIV pre-exposure prophylaxis (PrEP) and impact on perception of sexual health risk Design: Online anonymous self-completed survey to all cisgender men/trans-persons-who-have-sex-with-men (MSM/TPSM) sexual health clinic attendees (October 2018 to November 2019). Eligibility for analysis: MSM/TPSM self-identification, completed questions concerning HIV-status, PrEP use and sexual decision-making. Interviews with survey respondents at risk of HIV were analysed thematically and integrated with survey data using "following a thread" technique. Setting: Sexual health centre, Bristol, UK. Participants: Eligible survey responses were completed by 617/1975 MSM/TPSM and 24 were interviewed.
DOI: 10.6084/m9.figshare.11985255
title: Study data and dictionary for pneumococcal carriage surveillance in Blantyre, Malawi, 2015-2018

description: Research data and Dictionary
DOI: 10.6084/m9.figshare.11985255.v1
title: Study data and dictionary for pneumococcal carriage surveillance in Blantyre, Malawi, 2015-2018

description: Research data and Dictionary
DOI: 10.5281/zenodo.4160755
title: One-Pot Synthesis of B-Aryl Carboranes with Sensitive Functional Groups Using Sequential Cobalt- and Palladium-Catalyzed Reactions

description: Supporting Information. NMR spectra and cif-files
DOI: 10.5281/zenodo.4160754
title: One-Pot Synthesis of B-Aryl Carboranes with Sensitive Functional Groups Using Sequential Cobalt- and Palladium-Catalyzed Reactions

description: Supporting Information. NMR spectra and cif-files
DOI: 10.6084/m9.figshare.13168847
title: R0312_20191203a_videos

description: Rat 0312, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4101627
title: Inhibitory rTMS Modulation of the Occipital Pole Decreases Cortical Suppression of Liminal Contrast Perception

description: Matalb format data in data.mat. See dataCode.zip for details and example code (entire processing code not provided here).
DOI: 10.5281/zenodo.4101626
title: Inhibitory rTMS Modulation of the Occipital Pole Decreases Cortical Suppression of Liminal Contrast Perception

description: Matalb format data in data.mat. See dataCode.zip for details and example code (entire processing code not provided here).
DOI: 10.5287/bodleian:y0r8erqja
title: plasmid maps: from Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization
DOI: 10.6084/m9.figshare.13169201
title: Twelve years of soil preservation and rehabilitation at Rio do Peixe watershed, promoting conservation agriculture_dataset

description: Data set regarding water quality indicators, and livestock for the study "Twelve years of soil preservation and rehabilitation at Rio do Peixe watershed, promoting conservation agriculture" published in LDD.
DOI: 10.6084/m9.figshare.13169201.v1
title: Twelve years of soil preservation and rehabilitation at Rio do Peixe watershed, promoting conservation agriculture_dataset

description: Data set regarding water quality indicators, and livestock for the study "Twelve years of soil preservation and rehabilitation at Rio do Peixe watershed, promoting conservation agriculture" published in LDD.
DOI: 10.5517/ccdc.csd.cc25h03t
title: CCDC 2010415: Experimental Crystal Structure Determination

description: Related Article: V. Verma, S. Bordignon, M.R. Chierotti, M. Lestari, K. Lyons, L. Padrela, K.M. Ryan, M. Lusi|2020|IUCrJ|7|1124|doi:10.1107/S2052252520013263
DOI: 10.5517/ccdc.csd.cc25h07y
title: CCDC 2010419: Experimental Crystal Structure Determination

description: Related Article: V. Verma, S. Bordignon, M.R. Chierotti, M. Lestari, K. Lyons, L. Padrela, K.M. Ryan, M. Lusi|2020|IUCrJ|7|1124|doi:10.1107/S2052252520013263
DOI: 10.5517/ccdc.csd.cc25h06x
title: CCDC 2010418: Experimental Crystal Structure Determination

description: Related Article: V. Verma, S. Bordignon, M.R. Chierotti, M. Lestari, K. Lyons, L. Padrela, K.M. Ryan, M. Lusi|2020|IUCrJ|7|1124|doi:10.1107/S2052252520013263
DOI: 10.5517/ccdc.csd.cc25h04v
title: CCDC 2010416: Experimental Crystal Structure Determination

description: Related Article: V. Verma, S. Bordignon, M.R. Chierotti, M. Lestari, K. Lyons, L. Padrela, K.M. Ryan, M. Lusi|2020|IUCrJ|7|1124|doi:10.1107/S2052252520013263
DOI: 10.5517/ccdc.csd.cc25h05w
title: CCDC 2010417: Experimental Crystal Structure Determination

description: Related Article: V. Verma, S. Bordignon, M.R. Chierotti, M. Lestari, K. Lyons, L. Padrela, K.M. Ryan, M. Lusi|2020|IUCrJ|7|1124|doi:10.1107/S2052252520013263
DOI: 10.17632/3k8875yfmg.1
title: Data for: Meta-analysis of genetic parameters for traits of economic importance for beef cattle in the tropics

description: The data is a compilation of studies that have reported various parameters for different traits of importance for beef breeds in the tropics
DOI: 10.5281/zenodo.4159582
title: Application Deployment using Containers with Auto-scaling for Microservices in Cloud Environment

description: This dataset release supports the results presented in the paper "Application Deployment using Containers with Auto-scaling for Microservices in Cloud Environment" by S. N. Srirama, M. Adhikari, and S. Paul, accepted in Journal of Network and Computer Applications, ISSN: 1084-8045, vol. 160, pp. 1-20, 2020. Elsevier. When referring to the dataset please cite the paper above.
DOI: 10.5281/zenodo.4159581
title: Application Deployment using Containers with Auto-scaling for Microservices in Cloud Environment

description: This dataset release supports the results presented in the paper "Application Deployment using Containers with Auto-scaling for Microservices in Cloud Environment" by S. N. Srirama, M. Adhikari, and S. Paul, accepted in Journal of Network and Computer Applications, ISSN: 1084-8045, vol. 160, pp. 1-20, 2020. Elsevier. When referring to the dataset please cite the paper above.
DOI: 10.18154/rwth-2020-07503
title: Experimental Dataset: 40 kWth Pulverized Torrefied Biomass and Lignite Flames under Atmospheric and Oxy-fuel Conditions

description: The present dataset contains experimental results conducted on a series of 40 kWth aerodynamically stabilized pulverized torrefied biomass and lignite coal flames. Results and the experimental conditions have been described in the journal article "Flow Pattern and Behavior of 40 kWth Pulverized Torrefied Biomass Flames under Atmospheric and Oxy-fuel Conditions" from the present authors. This dataset is composed of experimental results from four different studied test flames, named: A21-TB, O27-TB, A21-L and O27-L. Two torrefied biomass flames, under conventional and oxy-fuel conditions, and two similar coal (lignite) conditions. Data from three different types of measurements are presented: mean and RMS, 2D velocity profiles from Laser Doppler anemometry (LDA); local gas composition (point measurements) by employing a sampling probe and Fourier-transform infrared absorption spectrometry (FTIR); Wall-incident flame radiation employing a thermopile mounted at different locations along the inner walls of the combustion chamber.
DOI: 10.5287/bodleian:koej8agdn
title: data: from Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization
DOI: 10.5281/zenodo.4160400
title: The Viking HRTF dataset v2

description: The <strong>Viking HRTF dataset v2</strong> is a collection of head-related transfer functions (HRTFs) measured at the University of Iceland. It includes full-sphere HRTFs measured on a dense spatial grid (1513 positions) with a KEMAR mannequin with different pairs of artificial pinnae attached. The artificial pinnae were previously obtained through a custom molding procedure from different lifelike human heads (<em>courtesy of Ernst Backman, Saga Museum Reykjavík</em>). An overview of the methods and procedures of the HRTF measurement sessions can be found in the papers Simone Spagnol, Kristján Bjarki Purkhús, Sverrir Karl Björnsson, and Rúnar Unnthórsson (2019). <em>The Viking HRTF dataset. </em>In: <em>Proceedings of the 16th Sound & Music Computing Conference (SMC 2019)</em>, pages 55-60, Málaga, Spain. Marius George Onofrei, Riccardo Miccini, Rúnar Unnthórsson, Stefania Serafin, and Simone Spagnol (2020). <em>3D ear shape as an estimator of HRTF notch frequency. </em>In: <em>Proceedings of the 17th Sound & Music Computing Conference (SMC 2020)</em>, pages 131-137, Torino, Italy. A first version of the dataset has been released in May 2019. In this second version, the used artificial pinnae were re-casted from the existing inverse molds with 35 Shore OO silicone for both the left and right channels of the KEMAR. Furthermore, the HRTF measurements have been taken inside the anechoic chamber of the University of Iceland in Reykjavík and free-field compensated. The dataset, available in SOFA format, contains measurements for 20 different pairs of articial pinna replicas (subjects A to T, where T is a pair of standard large KEMAR anthropometric pinnae replicas) plus a pair of flat baffles simulating a "pinna-less" condition (subject Z). 3D scans of the 20 left pinna replicas are available as STL files. The scans were captured at 1mm resolution with a Creaform Go!SCAN 20 (courtesy of <em>AAU Create Prototyping Lab</em>). The data is provided under the CC-BY 4.0 license that grants unlimited access for everyone. If you use this data please reference Simone Spagnol, Kristján Bjarki Purkhús, Sverrir Karl Björnsson, and Rúnar Unnthórsson (2019). <em>The Viking HRTF dataset. </em>In: <em>Proceedings of the 16th Sound & Music Computing Conference (SMC 2019)</em>, pages 55-60, Málaga, Spain. Simone Spagnol, Riccardo Miccini and Rúnar Unnthórsson (2020). <em>The Viking HRTF dataset v2</em>. DOI: 10.5281/zenodo.4160401
DOI: 10.6084/m9.figshare.13169263.v1
title: Table S1. Antarctic Peninsula and South Shetland Islands II. Petrology

description: Analyses of adakites from the Antarctic Peninsula volcanic arc
DOI: 10.6084/m9.figshare.13169263
title: Table S1. Antarctic Peninsula and South Shetland Islands II. Petrology

description: Analyses of adakites from the Antarctic Peninsula volcanic arc
DOI: 10.5287/bodleian:vjxgqj09d
title: A distinct ecotonal tree community exists at a central African forest-savanna transitions
DOI: 10.17632/vvgcgs65x3.6
title: Data for: Aeolian additions of Podzolic soils on the high-altitude mountains in central Taiwan

description: The data used in the article.
DOI: 10.5281/zenodo.4161195
title: the sound of software tranquillity - full trace

description: This dataset was obtained using ftrace with the kernel function tracer for one second of inactivity on a laptop. It is the basis of an artistic investigation into software tranquillity.
DOI: 10.5281/zenodo.4161194
title: the sound of software tranquillity - full trace

description: This dataset was obtained using ftrace with the kernel function tracer for one second of inactivity on a laptop. It is the basis of an artistic investigation into software tranquillity.