cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.d6108/1
title: Multilocus genotypes from all sites

description: This file contains multilocus genotypes generated by fragment analysis of PCR amplicon using an ABI 3730 with an internal size standard (Genescan LIZ-500, Applied Biosystems, CA). Electropherograms were visualized and allele sizes were called using GENEMAPPER v 4.0 (Applied Biosystems, CA). Samples that failed to amplify more than 2 of 11 loci were excluded from the analysis. Alleles are labeled by their 3-digit fragment size. Alleles are concatenated for each locus giving a 6-digit genotype for each primer. Missing data is coded as "0".Sample names contain a two-digit code for the year followed by an underscore and a four-digit identifier for each colony sampled. Together this 6-digit number provides a unique identifier for each sample.
DOI: 10.5061/dryad.d6108/2
title: Compressed file of coral photographs

description: Unaltered photos of sampled coral colonies at sites sympatric for Porites lobata and P. evermanni. Photos were scaled using a ruler included in each photograph in the program AXIOVISION 4.8 (Zeiss, Germany). Visible surface area in each photo was measured using the Trace tool in AXIOVISION. Discernible mussel holes were counted using the event tool in AXIOVISION. File names do not reveal species identity. File names contain a two-digit code for the year followed by an underscore and a four-digit identifier for each colony sampled. Together this 6-digit number provides a unique identifier for each colony sampled/photographed. Multiple photographs were taken for each colony. The letter following the photograph allows each photo to have a unique identifier. Photos deemed too far or out of focus were not uploaded.
DOI: 10.5061/dryad.gh895/1
title: Phylip sequence data file

description: Concatenated Phylip sequence file. Concatenated in the order: CAD, EF-1alpha, COI.
DOI: 10.5061/dryad.gs94r/1
title: Ammospermophilus mutlilocus dataset

description: Nexus file with aligned sequences for 7 genes generated from 23 samples. See ReadMe file to match sample names with voucher specimens.
DOI: 10.5061/dryad.gs94r/2
title: Ammospermophilus mtDNA dataset

description: Nexus file with aligned sequences for 2 mtDNA genes generated from 88 samples. See ReadMe file to match sample names with voucher specimens.
DOI: 10.5061/dryad.h237q/1
title: SSR_Profile_Data_Pk-SA

description: Sampling year, country, location (GPS), host and the SSR profile for the PST isolates studied in the articel Ali et al., Mol Ecol.
DOI: 10.5061/dryad.h32j9/1
title: Genomic sequence data from eight nuclear exons in the purple sea urchin, Strongylocentrotus purpuratus

description: This data submission includes sequence data in fasta format for 8 nuclear exons from 165 field-collected purple sea urchins from Bamfield, Canada to Baja California, Mexico.  Genomic DNA was sequenced in both forward and reverse directions, and visualized and cleaned using Sequencher software.  Each file is named by the gene identifier corresponding to the S. purpuratus genome (spbase.org).  Each sequence is named with a five digit code identifying the individual urchin sequenced, followed by the gene number for that locus.  The five digit individual identifier consists of three letters, "P" for "purpuratus," followed by two letters for the sample site, followed by two numbers identifying the individual.  Location codes are as follows: BM – Bamfield, Canada; BB – Boiler Bay, Oregon; PP – Patrick’s Point, California; MY – Monterey, California; SD – San Diego, California; BJ – La Bufadora, Baja California, Mexico; PB – Punta Baja, Baja California, Mexico; SC – Punta San Carlos, Baja California, Mexico.  See Table 2 of the paper for latitude /longitude details.
DOI: 10.5061/dryad.h3t86/1
title: Resistance and Damage Measurements

description: This is an Excel file with resistance/damage measurements for herbivores and fitness estimates for host plants. The data were used for selection analyses.
DOI: 10.5061/dryad.h768p/1
title: Dennehy et al. 2013 JHered fitness data

description: Fitness data of clones obtained from phage phi6 populations evolved at high and low MOI. Each clone's fitness was estimated 3x. Fitness estimated using equation: W = log(Nf/Ni) where Nf is the final population titer (pfus) after overnight growth on Pseudomonas phaseolicola and Ni is the initial inoculum size.
DOI: 10.5061/dryad.h8c10/1
title: IIV data

description: location is room section identifier; indiv is individual identity; trial is trial number; time is am vs pm; open and pos are variables about spatial position that were not considered in the ms; activity is the number of scans with movement;
DOI: 10.5061/dryad.hf792/1
title: DataAmNat

description: This datafile contains the data from the yeast experiment in which three strains of Saccharomyces cerevisiae strain Y55 were mixed together (non-labeled spores, GFP and BFP vegetative cells), then grown with limited carbon. FACS generated counts of cells (and calculated cells/mL) were reported for each sample at the beginning and end of the experiment.
DOI: 10.5061/dryad.hp6tb/1
title: data file of Ficus pumila and Wiebesia sp.s
DOI: 10.5061/dryad.j18pv/1
title: Ploidy level, gender and nuclear (SNP) genotypes for Potamopyrgus antipodarum snails from 16 New Zealand lake populations
DOI: 10.5061/dryad.k6351/1
title: CMR data for gorilla social dynamics

description: the file contains the capture history for adult individuals in Lokoué (sheet 1, population affected by Ebola), and Romani (sheet 2, undetermined epidemiological status). Legends for status in capture history are in sheet 3
DOI: 10.5061/dryad.k6351/2
title: CMR data for gorilla immigration -pradel model

description: this file contains data for estimating immigration of adults individuals in Lokoué (sheet 1, population affected by ebola), and in Romani (sheet 2, undetermined epidemiological status). 0: not seen, 1: seen. data are analyzed with Pradel's model.
DOI: 10.5061/dryad.km728/1
title: Baur_et_al_2014_Anisopteromalus_raw_data_files_and_images
DOI: 10.5061/dryad.n4v8g/1
title: Positions of kittiwakes 2011-2012

description: Median monthly positions of free-ranging black-legged kittiwakes from Svalbard/Norway, obtained by geolocators from August 2011 to April 2012.
DOI: 10.5061/dryad.p2f7c/3
title: nABCtemolo_4pops_SSRS_I

description: Microsatellite data set analysed in ABC
DOI: 10.5061/dryad.q50qs/1
title: Microsatellite data for 134 African buffalo, Genepop Format

description: 134 African buffalo genetic samples collected 2006-2009 in the Caprivi Strip, Namibia, genotyped at 10 microsatellite loci, presented in Genepop format for the 6 herds (populations) in the study
DOI: 10.5061/dryad.q50qs/2
title: UnityResistanceSamplingPolygons

description: These are circuitscape cumulative resistance estimates using the sampling polygons for the 5 native populations (excluding Mudumu, the translocated population)
DOI: 10.5061/dryad.rr6400b4/2
title: chloroplast.86taxa

description: See details in: Moore, M., P. Soltis, C. Bell, J. Burleigh, and D. Soltis. 2010. Phylogenetic analysis of 83 plastid genes further resolves the early diversi cation of eudicots. Proc. Natl. Acad. Sci. 107:4623-4628.
DOI: 10.5061/dryad.rr6400b4/3
title: matK

description: See details in: Moore, M., P. Soltis, C. Bell, J. Burleigh, and D. Soltis. 2010. Phylogenetic analysis of 83 plastid genes further resolves the early diversi cation of eudicots. Proc. Natl. Acad. Sci. 107:4623-4628.
DOI: 10.5061/dryad.s14rj/1
title: Terminal investment in Tenebrio molitor

description: Encapsulation responses, resting metabolic rate before activation of the immune system and after the activation, attractiveness of male odours to females before activation of the immune system and after its activation, and survival of males in relation to their immune response (encapsulation rate), sexual attractiveness and metabolic rate.
DOI: 10.5061/dryad.sc947/2
title: Lemos_foxes_TransectsID_Limoeiro_2012Jun28
DOI: 10.5061/dryad.sd871/1
title: Genotypes

description: The file contains genotypes of black bears (Ursus americanus) and coyotes (Canis latrans) detected at caribou calf kill sites in Newfoundland, Canada.
DOI: 10.5061/dryad.t9584/1
title: COI alignment

description: Alignment of cytochrome oxidase I sequences resulted in an 822 bp matrix with no gaps used for phylogenetic analyses.
DOI: 10.5061/dryad.t9584/2
title: ITS-1 alignment

description: Alignment of 133 internal transcribed spacer 1 sequences (130 of Cephaloflexa bergi species and 3 of Cephaloflexa sp. as outgroup) used for the phylogenetic analyses.
DOI: 10.5061/dryad.v1d30/1
title: Full body CT scan of a live Varanus exanthematicus (V1)

description: Full body CT scan of a live female Varanus exanthematicus (V1; mass: 930g). Scanned at scanned at 100 kVp 400 Ma (0.6 x 0.4 mm). The animal was scanned without sedation during apnea.
DOI: 10.5061/dryad.v1d30/2
title: Full body CT scan of a live Varanus exanthematicus (V3)

description: Full body CT scan of a live female Varanus exanthematicus (V3; mass: 680g). Scanned at scanned at 100 kVp 400 Ma (0.6 x 0.4 mm). The animal was scanned without sedation during apnea.
DOI: 10.5061/dryad.v1d30/3
title: Full body CT scan of a deceased Varanus exanthematicus

description: Full body CT scan of a deceased Varanus exanthematicus. Scanned at scanned at 100 kVp 400 Ma (0.6 x 0.4 mm). The animal was donated to the University of Utah by James Dix (Utah's Reptile Rescue Service). The animal was intubated and the lungs inflated with a 60 cc syringe prior to scanning. The animal died from unknown natural causes.
DOI: 10.5061/dryad.v460h/1
title: species data

description: Groups of static allometries from species belonging to the same genus.
DOI: 10.5061/dryad.v6f1g/2
title: DG_Boar_Map

description: Info on the 45720 autosomal SNPs in .map file format corresponding to the genotypes in the DG_Boar.ped file for use in PLINK software
DOI: 10.5061/dryad.1cn02/1
title: Wavelength-specific quantitative genetics datasheet

description: File containing reflectance measurements and other phenotypic data for all samples.
DOI: 10.5061/dryad.288ft/1
title: Pelomedusa_Supporting-Information_Reference_Alignment

description: REFERENCE ALIGNMENT. 12S rRNA sequences (fasta format) for Pelomedusa species.
DOI: 10.5061/dryad.288ft/2
title: Pelomedusa_Supporting-Information_Table_S1

description: TABLE S1. Used samples, GenBank sequences and their accession numbers. Mitochondrial lineages sensu Vargas-Ramírez et al. (2010) and Fritz et al. (2014) indicated.
DOI: 10.5061/dryad.288ft/3
title: Pelomedusa_Supporting-Information_Table_S2

description: TABLE S2. Evolutionary models selected by the Bayesian Information Criterion in PARTITIONFINDER (Lanfear et al. 2012).
DOI: 10.5061/dryad.39309/1
title: 1.Alignments

description: Multiple sequence alignments.
DOI: 10.5061/dryad.39309/2
title: 2.PhylogeneticTrees

description: Phylogenetic Trees: BAY, ML and NJ, for the 66 sequences used in this study. File format (.xtg) readable in TreeGraph.
DOI: 10.5061/dryad.39309/3
title: 3.DIVERGE

description: Functional divergence results. Alignment and tree used to produce the results.
DOI: 10.5061/dryad.39309/4
title: 4.Selection

description: Positive Selection results from PAML and TreeSAAP. Control files used for Branch, Branch-Site and Site models.
DOI: 10.5061/dryad.39309/5
title: 5.Protein3DModels

description: Protein 3D model obtained for WAP65-1 and WAP65-2 in the European seabass (Dicentrarchus labrax) from I-Tasser server.
DOI: 10.5061/dryad.738d2/1
title: LandUse_buffers
DOI: 10.5061/dryad.738d2/2
title: LandUse_Full
DOI: 10.5061/dryad.738d2/3
title: LocalityTraits
DOI: 10.5061/dryad.738d2/4
title: TVAFishData
DOI: 10.5061/dryad.7825c/1
title: chimpanzee stag hunt data
DOI: 10.5061/dryad.7th55/5
title: 454 sequence data

description: 454 sequence data of Acropora colonies from Kimberley and Abrolhos
DOI: 10.5061/dryad.7th55/6
title: R script

description: figures 2 and 3
DOI: 10.5061/dryad.7th55/7
title: OTU distribution for each colony

description: OTU distribution for each colony
DOI: 10.5061/dryad.7th55/8
title: analysis pipeline

description: steps for analysis pipeline in Mothur
DOI: 10.5061/dryad.9540r/1
title: AllPlantDataStyle2_1

description: Trait values and genotypes for individual experimental plants
DOI: 10.5061/dryad.9540r/2
title: AlignedContig_StyleD1&D2withBACs

description: Text file with StyleD1 and StyleD2 sequences aligned to S. lycopersicum and S. pennellii BACs, and coding sequences for S. lycopersicum loci L02 and L04
DOI: 10.5061/dryad.9gg30/1
title: SANE DATA for upload

description: Excel file with raw data used in paper.
DOI: 10.5061/dryad.b922k/1
title: TableS3-phylum

description: Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to phylum from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
DOI: 10.5061/dryad.b922k/2
title: Table S4.  Annotation of total 16S reads to class level.

description: Excel spread sheet includes a distribution of the filtered 16S 454-reads annotated to class level from termites collected from three different colonies (S7-S10; S11-S14; and S15-S18) fed paper and wood (S7,S11,S15) and paper (S8, S12, S16), wood (S9,S13, S17). Termites sampled directly from lab colonies are represented by S10, S14, and S18.
DOI: 10.5061/dryad.c6500/1
title: Foster and Higham 2014 - public kinematic and emg data

description: This excel file contains three sheets of data.  The first sheet, "kinematic variables", contains joint angles and angular velocities, as well as additional variable such as duty factor and body velocity.  The second sheet, "emg variables", contains pertinent muscle activity variables relating to the relative timing and magnitude of bursts of activity.  The third sheet, "total stance RIA", contains data for the total recruitment of the muscles during stance phase.  For all sheets, data include all strides from each trial, treatment, and individual for all variables that were used for calculations and statistical analyses in the accompanying manuscript.  Column names are commented to include units or to describe column content.  Please contact the authors for additional data.
DOI: 10.5061/dryad.c6500/2
title: Foster and Higham 2014 - public video files

description: This excel file contains the filenames of all video files related to the content of the accompanying manuscript.  Information related to the treatment and number of strides in each video are also included.  Please contact the authors for access to the videos.
DOI: 10.5061/dryad.dr33q/1
title: Allozyme genotypes at 9 loci and ploidy information for Potamopyrgus antipodarum snails

description: Allozyme genotypes at 9 loci and ploidy information for Potamopyrgus antipodarum snails from Lake Alexandrina, New Zealand.
Genotypes were obtained with celulose acetate electrophoresis. Ploidy level was assigned based on asymetric banding pattern in heterozygotes. Loci used for assigning ploidy level include: 6PGD,  MPI, IDH2, PGM1 and PGM2 (ploidy assignment based on AAT1, AAT2, IDH1 and PEP-D was not reliable).

Description of the column headings and abbreviations uded:
Data in columns A, B, C, D was not used in the analyses, but can be used to track the sample back to one of the original celulose acetate gels that are stored at the department of Aquatic Ecology, Eawag, Switzerland.
A-SNAIL - snail number per sample
B-TUBE - eppendorf tube code
C-RUN - allozyme genotyping run
D-POSITION - position on gel
E-YEAR - year sampled
F-SITE - sampling site
G-HABITAT - habitat where sample was taken (3 depth-related habitats: shallow, mid-water and deep)
H-PLOIDY - ploidy level (NA - not available, 0 - homozygote, 2-diploid, 3-triploid)
I- SEX_COMMON_RARE - reproductive mode, for clones common or rare (S- sexuals, C-common clones, R-rare clones). A clone was defined as ‘common’ if its frequency among triploid asexuals was above 1.5% in any of the samples (year/site/habitat combination) 
J-CLONE_ID - Unique clone number
K-S - column names are allozyme loci names. Genotypes are coded with a single digit. Loci for which the banding pattern is unreliable for asigning ploidy level are left with 2 alleles for triploid heterozygotes.
DOI: 10.5061/dryad.j18pv/2
title: Mitochondrial (cytochrome b) haplotypes in Potamopyrgus antipodarum (with outgroup)

description: Sequences of unique haplotypes of mitochondrial cytochrome-b fragment in Potamopyrgus antipodarum. Homologous sequence for related species (P. estuarinus) is included an an outgroup.
DOI: 10.5061/dryad.j326j/1
title: Elliott et al. (2014). Plant Cell 10.1105/tpc.114.123620 Supplemental Data

description: Supplemental Figures 1-24, Supplemental Tables 1-11, Supplemental Methods, Supplemental Dataset 1-8
DOI: 10.5061/dryad.j35fc/1
title: LabeoninicombinedExpandedDataset

description: LabeoniniCombinedExpandedDataset (for Fig. 1)
DOI: 10.5061/dryad.j6332/1
title: Panulirus interruptus COI Sequence Alignment

description: This is an alignment of all of the cytochrome c oxidase subunit I (COI) mitochondrial DNA sequence data used in this study.  There are a total of 931 sequences, each of which are 494 base pairs in length.  The protein translation starts at base pair #1.
DOI: 10.5061/dryad.j6332/2
title: Panulirus interruptus Sample Site GPS Points

description: This is an Excel file containing Latitude and Longitude in decimal degrees for each of the sample collection sites in this study.  The first column lists the sites from North to South, the second column lists the site abbreviations, the third column lists the latitude in decimal degrees North, and the fourth column lists the longitude in decimal degrees West (negative).
DOI: 10.5061/dryad.j6332/3
title: Panulirus interruptus Microsatellite Genotypes

description: This file lists the microsatellite genotypes for each individual scored for the study.  Column A is the sample name, consisting of a site abbreviation, and the numbered individual for that site.  Column B is the site where the specimen was collected.  Columns C-I are the alleles for each of the seven microsatellite markers for that individual.  The alleles are presented as the size of the alle, not the number of base pair repeats.  The two alleles for each marker are listed in two rows for each individual.
DOI: 10.5061/dryad.j939d/1
title: Thermal preference of Drosophila subobscura sampled along a latitudinal gradient in Chile
DOI: 10.5061/dryad.jd25q/1
title: Data_Roche et al 2013 BEAS

description: Date, time and legend are included in the data file. Additional information on data collection is contained in the associated publication.
DOI: 10.5061/dryad.jf1bv/1
title: BFR_elapsed_time

description: Culex pipiens blood feeding rhythms during a 24 h day as measured by elapsed time to feeding.  Please see descriptive information at the head of the file.
DOI: 10.5061/dryad.jf1bv/2
title: blood_feeding_data_for_analysis

description: Culex pipiens blood feeding rhythms as measured by proportion fed at 3 h intervals over a 24 h day.  Please see descriptive information at the head of the file.
DOI: 10.5061/dryad.jf1bv/3
title: sep_cages

description: Culex pipiens feeding when cages were only allowed access to the blood feeder for one 3 h interval during the 24 h test.  Please see descriptive information at the head of the data file.
DOI: 10.5061/dryad.jm8vp/4
title: STable 4

description: Population size variation model
DOI: 10.5061/dryad.k9b14/2
title: Supplementary Figure 1

description: A, The study area (enlarged in B) is marked by the rectangle (modified from Klug 2001). B, Geological map showing the early Emsian localities of the eastern Moroccan Anti-Atlas (modified from Klug 2001). Studied specimens derive from the localities marked by a black dot. C, Paleogeographic reconstruction of the Emsian (modified from Scotese 2001) showing known occurrences of Anetoceras, Erbenoceras and other early Emsian ammonoid faunas discussed in the text and the supplementary appendix. References not listed in the main text can be found in the supplementary appendix.
DOI: 10.5061/dryad.k9b14/3
title: Supplementary Figure 2

description: Bivariate plots of whorl interspace index WII (A) and whorl expansion rate WER (B) of Group I (black fillings, white lines) and Group II (white fillings, black lines) against diameter. Note the similarity between the graph of WER and whorl height index WHI of Figure 3A. Multiple measurements of the same specimen through ontogeny are connected by a line.
DOI: 10.5061/dryad.kf320/1
title: DataVersteeghetal_JEB_2012

description: BMR, immune and corticosterone data used in the article by Versteegh et al. in Journal of Evolutionary Biology 2012
DOI: 10.5061/dryad.kn03t/1
title: Fecundity, starvation resistance and size data

description: Data from Fecundity, starvation resistance and body size assays performed on the three experimental populations and the controls (Ad - Adraga, Mo - Montpellier, Gro - Groningen, TA - Controls). Assays were performed at generations 6, 11, 14, 18 and 22 of laboratory adaptation.
DOI: 10.5061/dryad.kt71r/1
title: MMRR function R script

description: R script for 'MMRR' function that performs Multiple Matrix Regression with Randomization analysis.
DOI: 10.5061/dryad.m4h77/1
title: Table A1
DOI: 10.5061/dryad.m4h77/3
title: Table A3
DOI: 10.5061/dryad.m4h77/4
title: Table WORKER EGGS EATEN
DOI: 10.5061/dryad.m4h77/5
title: Table WORKER DISCRIMINATION OF QUEEN- AND WORKER-LAID EGGS
DOI: 10.5061/dryad.m4h77/6
title: Table RELATIVE ROLES OF QUEENS AND WORKERS IN EGG-CELL CONSTRUCTION AND SEALING
DOI: 10.5061/dryad.q1431/1
title: Parasite data with all individuals

description: File includes ID number for each bird screened for malaria infection, year of capture, location of capture, sex, whether bird was infected (1) or not (0), the malaria strain with which is was infected, and the type of malaria infection (H= Haemoproteus, P= Plasmodium). The column strain2 has strains collapsed into groups with &lt;0.5% sequence divergence.
DOI: 10.5061/dryad.q50qs/3
title: UnityResistanceHomeRangePolygons

description: These are circuitscape cumulative resistance estimates for 5 buffalo populations (excluding Mudumu, the translocated population) but using home range rather than sampling polygons
DOI: 10.5061/dryad.q50qs/4
title: Buff118_10classes_SPAGEDI

description: SpaGeDi file, 10 microsatellite loci, all buffalo except for those in the translocated population of Mudumu, set for 10 distance classes. To change number of distance classes, change "-10" in row two to another value (e.g., "-20" for 20 distance classes)
DOI: 10.5061/dryad.q50qs/5
title: BuffaloSampleLocations

description: GIS data: Point locations for genetic samples
DOI: 10.5061/dryad.q50qs/6
title: AnalysisClip

description: GIS layer: polygon to clip analyses to extent used in paper
DOI: 10.5061/dryad.q50qs/7
title: AllMainRivers

description: GIS data: all large rivers in and around Caprivi Strip; these data were used when generating resistance layers describing distance from rivers
DOI: 10.5061/dryad.q50qs/8
title: VetFence

description: Location of the veterinary fence on the southern edge of the Caprivi Strip that limits buffalo movements.
DOI: 10.5061/dryad.qq67h/1
title: PollinatorAbundance_GradientSites_CA

description: Pollinator abundance by species at gradient sites in California
DOI: 10.5061/dryad.qq67h/2
title: PollinatorAbundance_GradientSites_NJ

description: Pollinator abundance by species at gradient sites in New Jersey
DOI: 10.5061/dryad.qq67h/3
title: PollinatorTraits_ReferenceSites_CA

description: Pollinator traits by species, as measured at reference sites in California
DOI: 10.5061/dryad.qq67h/4
title: PollinatorTraits_ReferenceSites_NJ

description: Pollinator traits by species, as measured at reference sites in New Jersey
DOI: 10.5061/dryad.rr6400b4/4
title: primates

description: This is the Primates data set from: Hayasaka, K., T. Gojobori, and S. Horai. 1988. Molecular phylogeny and evolution of primate mitochondrial dna. Mol. Biol. Evol. 5:626-644.