cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14134755
title: Landmarking data for mandible specimens from Ecomorphological diversification of squamates in the Cretaceous

description: Squamates (lizards and snakes) are highly successful modern vertebrates, with over 10 000 species. Squamates have a long history, dating back to at least 240 million years ago (Ma), and showing increasing species richness in the Late Cretaceous (84 Ma) and Early Paleogene (66–55 Ma). We confirm that the major expansion of dietary functional morphology happened before these diversifications, in the Mid-Cretaceous, 110–90 Ma. Until that time, squamates had relatively uniform tooth types, which then diversified substantially and ecomorphospace expanded to modern levels. This coincides with the Cretaceous Terrestrial Revolution, when angiosperms began to take over terrestrial ecosystems, providing new roles for plant-eating and pollinating insects, which were, in turn, new sources of food for herbivorous and insectivorous squamates. There was also an early Late Cretaceous (95–90 Ma) rise in jaw size disparity, driven by the diversification of marine squamates, particularly early mosasaurs. These events established modern levels of squamate feeding ecomorphology before the major steps in species diversification, confirming decoupling of diversity and disparity. In fact, squamate feeding ecomorphospace had been partially explored in the Late Jurassic and Early Cretaceous, and jaw innovation in Late Cretaceous squamates involved expansions at the extremes of morphospace.
DOI: 10.25345/c5222k
title: MassIVE MSV000086966 - GNPS-Ganoderma Lucidum Karst-G1-G14-Mass Spectrometry data
title: The fungal of Ganoderma gene was collected in sourth China in 2018. Each of them was extracted by ethyl acetate.
DOI: 10.5281/zenodo.4569479
title: Trialstreamer data

description: Trialstreamer annotated collection of RCTs. This respository contains baseline files (large), and subsequent updates (daily for PubMed, weekly for ICTRP).
DOI: 10.5281/zenodo.3961258
title: A survey of German business air traveller

description: This dataset provides results of a passenger survey from 2017 at Munich airport in Germany (N=67). Within the study, we have examined how <strong>relevant factors shaping the modern working world may influence the personal perception of business related air travel.</strong> These relevant factors are: (1) Advanced communication technologies, (2) Personal experience and perception, (3) Work structures and requirements towards work, (4) Environment, (5) Alternative transport modes (rail), and (6) Impact of age and life stage. We surveyed <strong>business air travellers only</strong>. The questionnaire is translated from German to English. The raw data and questionnaire can be found attached. We invite researcher to duplicate / repeat the study and increase the country coverage and overall sample size. Please cite accordingly. If you have additional questions, please get in touch with us.
description: A cooresponding paper was presented at the 22nd ATRS World Conference 2018 in Seoul, South Korea. A cooresponding journal paper was published in JATM: https://doi.org/10.1016/j.jairtraman.2021.102040
DOI: 10.5281/zenodo.3961257
title: A survey of German business air traveller

description: This dataset provides results of a passenger survey from 2017 at Munich airport in Germany (N=67). Within the study, we have examined how <strong>relevant factors shaping the modern working world may influence the personal perception of business related air travel.</strong> These relevant factors are: (1) Advanced communication technologies, (2) Personal experience and perception, (3) Work structures and requirements towards work, (4) Environment, (5) Alternative transport modes (rail), and (6) Impact of age and life stage. We surveyed <strong>business air travellers only</strong>. The questionnaire is translated from German to English. The raw data and questionnaire can be found attached. We invite researcher to duplicate / repeat the study and increase the country coverage and overall sample size. Please cite accordingly. If you have additional questions, please get in touch with us.
description: A cooresponding paper was presented at the 22nd ATRS World Conference 2018 in Seoul, South Korea. A cooresponding journal paper was published in JATM: https://doi.org/10.1016/j.jairtraman.2021.102040
DOI: 10.5281/zenodo.4024404
title: Data supplement to "Geographic variation and acclimation effects on thermoregulation behavior in the widespread lizard Liolaemus pictus"

description: Populations at the warm range margins of the species distribution may be at the greatest risks of extinction from global warming unless they can tolerate extreme environmental conditions. Yet, some studies suggest that the thermal behavior of some lizard species is evolutionarily rigid. During two successive years, we compared the thermal biology of two populations of <em>Liolaemus pictus</em> living at the northern (warmer) and one population living at the southern (colder) range limits, thus spanning an 800 km latitudinal distance. Populations at the two range margins belong to two deeply divergent evolutionary clades. We quantified field body temperatures (T<sub>b</sub>), laboratory preferred body temperatures (PBT), and used operative temperature data (T<sub>e</sub>) to calculate the effectiveness of thermoregulation (<em>E</em>). During one year in all populations, we further exposed half of the lizards to a cold or a hot acclimation treatment to test for plasticity in the thermal behavior. The environment at the southern range limit was characterized by cooler weather and lower T<sub>e</sub>. Despite that, females had higher T<sub>b</sub> and both males and females had higher PBT in the southernmost population (or clade) than in the northernmost populations. Acclimation to cold conditions led to higher PBT in all populations suggesting that plastic responses to thermal conditions, instead of evolutionary history, may contribute to geographic variation. Lizards regulated moderately well their body temperature (<em>E≈</em>0.7): they avoided warm microhabitats in the northern range but capitalized on warm microhabitats in the southern range. We review literature data to show that <em>Liolaemus</em> species increase their thermoregulation efficiency in thermally challenging environments. Altogether, this indicates that habitats of low thermal quality generally select against thermoconformity in these lizards.
description: This study was funded by a research project Fondecyt no 11121365 from the Comision Nacional de Investigación Científica y Tecnológica de Chile (CONICYT) to P. Artacho. All protocols were approved by the National Agency of Agriculture and Livestock (SAG, Servicio Agrícola y Ganadero) and the Bioethics Committee of the Austral University of Chile (permit 2833). D.L. Moreno Azócar kindly provided unpublished operative temperature data.
DOI: 10.15161/oar.it/73553
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.5281/zenodo.4313784
title: Dataset related to article "Macrophage morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases"

description: This record contains data related to article "Morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases" Abstract It has long been known that in vitro polarized macrophages differ in morphology. Stemming from a conventional immunohistology observation, we set out to test the hypothesis that morphology of tumor-associated macrophages (TAMs) in colorectal liver metastasis (CLM) represents a correlate of functional diversity with prognostic significance. Density and morphological metrics of TAMs were measured and correlated with clinicopathological variables. While density of TAMs did not correlate with survival of CLM patients, the cell area identified small (S-TAM) and large (L-TAM) macrophages that were associated with 5-yr disease-free survival rates of 27.8% and 0.2%, respectively (P &lt; 0.0001). RNA sequencing of morphologically distinct macrophages identified LXR/RXR as the most enriched pathway in large macrophages, with upregulation of genes involved in cholesterol metabolism, scavenger receptors, MERTK, and complement. In single-cell analysis of mononuclear phagocytes from CLM tissues, S-TAM and L-TAM signatures were differentially enriched in individual clusters. These results suggest that morphometric characterization can serve as a simple readout of TAM diversity with strong prognostic significance.
description: This record contains data related to the article "Morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases" funded by Associazione Italiana per la Ricerca sul Cancro grant number AIRC 5x1000 IG-21147
DOI: 10.5281/zenodo.4313783
title: Dataset related to article "Macrophage morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases"

description: This record contains data related to article "Morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases" Abstract It has long been known that in vitro polarized macrophages differ in morphology. Stemming from a conventional immunohistology observation, we set out to test the hypothesis that morphology of tumor-associated macrophages (TAMs) in colorectal liver metastasis (CLM) represents a correlate of functional diversity with prognostic significance. Density and morphological metrics of TAMs were measured and correlated with clinicopathological variables. While density of TAMs did not correlate with survival of CLM patients, the cell area identified small (S-TAM) and large (L-TAM) macrophages that were associated with 5-yr disease-free survival rates of 27.8% and 0.2%, respectively (P &lt; 0.0001). RNA sequencing of morphologically distinct macrophages identified LXR/RXR as the most enriched pathway in large macrophages, with upregulation of genes involved in cholesterol metabolism, scavenger receptors, MERTK, and complement. In single-cell analysis of mononuclear phagocytes from CLM tissues, S-TAM and L-TAM signatures were differentially enriched in individual clusters. These results suggest that morphometric characterization can serve as a simple readout of TAM diversity with strong prognostic significance.
description: This record contains data related to the article "Morphology of tumor-associated macrophages as a correlate of metabolism with prognostic significance in colorectal liver metastases" funded by Associazione Italiana per la Ricerca sul Cancro grant number AIRC 5x1000 IG-21147
DOI: 10.5281/zenodo.4569463
title: AkhilaSriManasa/Understanding-Emotions-of-Developer-CommunityTowards-Software-Documentation: v1.0.0

description: First release of documentation-related commit messages dataset, and results of sentiment analysis of these messages.
DOI: 10.5281/zenodo.4569462
title: AkhilaSriManasa/Understanding-Emotions-of-Developer-CommunityTowards-Software-Documentation: v1.0.0

description: First release of documentation-related commit messages dataset, and results of sentiment analysis of these messages.
DOI: 10.6084/m9.figshare.13862108
title: Metadata record for: Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities

description: This dataset contains key characteristics about the data described in the Data Descriptor Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13862108.v1
title: Metadata record for: Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities

description: This dataset contains key characteristics about the data described in the Data Descriptor Dataset on SARS-CoV-2 non-pharmaceutical interventions in Brazilian municipalities. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.25678/0003h2
title: Data for: N2O emission in full-scale wastewater treatment: proposing a refined monitoring strategy

description: Nitrous oxide (N2O) emissions from wastewater treatment contribute significantly to greenhouse gas emissions. They have been shown to exhibit a strong seasonal and daily profile in previously conducted monitoring campaigns. However, only two year-long online monitoring campaigns have been published to date. Based on three monitoring campaigns on three full-scale wastewater treatment plants (WWTPs) with different activated sludge configurations, each of which lasted at least one year, we propose a refined monitoring strategy for long-term emission monitoring with multiple flux chambers on open tanks. Our monitoring campaigns confirm that the N2O emissions exhibited a strong seasonal profile and were substantial on all three plants (1-2.4% of the total nitrogen load). These results confirm that N2O is the most important greenhouse gas emission from wastewater treatment. The temporal variation was more distinct than the spatial variation within aeration tanks. Nevertheless, multiple monitoring spots along a single lane are crucial to assess representative emission factors in flow-through systems. Sequencing batch reactor systems were shown to exhibit comparable emissions within one reactor but significant variation between parallel reactors. The results indicate that considerable emission differences between lanes are to be expected in cases of inhomogeneous loading and discontinuous feeding. For example, N2O emission could be shown to depend on the amount of treated reject water: lanes without emitted &lt;1% of the influent load, while parallel lanes emitted around 3%. In case of inhomogeneous loading, monitoring of multiple lanes is required. Our study enables robust planning of monitoring campaigns on WWTPs with open tanks. Extensive full-scale emission monitoring campaigns are important as a basis for reliable decisions about reducing the climate impact of wastewater treatment. More specifically, such data sets help us to define general emission factors for wastewater treatment plants and to construct and critically evaluate N2O emission models.
DOI: 10.5281/zenodo.4569489
title: Data supplement to "Geographic variation and acclimation effects on thermoregulation behavior in the widespread lizard Liolaemus pictus"

description: Populations at the warm range margins of the species distribution may be at the greatest risks of extinction from global warming unless they can tolerate extreme environmental conditions. Yet, some studies suggest that the thermal behavior of some lizard species is evolutionarily rigid. During two successive years, we compared the thermal biology of two populations of <em>Liolaemus pictus</em> living at the northern (warmer) and one population living at the southern (colder) range limits, thus spanning an 800 km latitudinal distance. Populations at the two range margins belong to two deeply divergent evolutionary clades. We quantified field body temperatures (T<sub>b</sub>), laboratory preferred body temperatures (PBT), and used operative temperature data (T<sub>e</sub>) to calculate the effectiveness of thermoregulation (<em>E</em>). During one year in all populations, we further exposed half of the lizards to a cold or a hot acclimation treatment to test for plasticity in the thermal behavior. The environment at the southern range limit was characterized by cooler weather and lower T<sub>e</sub>. Despite that, females had higher T<sub>b</sub> and both males and females had higher PBT in the southernmost population (or clade) than in the northernmost populations. Acclimation to cold conditions led to higher PBT in all populations suggesting that plastic responses to thermal conditions, instead of evolutionary history, may contribute to geographic variation. Lizards regulated moderately well their body temperature (<em>E≈</em>0.7): they avoided warm microhabitats in the northern range but capitalized on warm microhabitats in the southern range. We review literature data to show that <em>Liolaemus</em> species increase their thermoregulation efficiency in thermally challenging environments. Altogether, this indicates that habitats of low thermal quality generally select against thermoconformity in these lizards.
description: This study was funded by a research project Fondecyt no 11121365 from the Comision Nacional de Investigación Científica y Tecnológica de Chile (CONICYT) to P. Artacho. All protocols were approved by the National Agency of Agriculture and Livestock (SAG, Servicio Agrícola y Ganadero) and the Bioethics Committee of the Austral University of Chile (permit 2833). D.L. Moreno Azócar kindly provided unpublished operative temperature data.
DOI: 10.5281/zenodo.4024403
title: Data supplement to "Geographic variation and acclimation effects on thermoregulation behavior in the widespread lizard Liolaemus pictus"

description: Populations at the warm range margins of the species distribution may be at the greatest risks of extinction from global warming unless they can tolerate extreme environmental conditions. Yet, some studies suggest that the thermal behavior of some lizard species is evolutionarily rigid. During two successive years, we compared the thermal biology of two populations of <em>Liolaemus pictus</em> living at the northern (warmer) and one population living at the southern (colder) range limits, thus spanning an 800 km latitudinal distance. Populations at the two range margins belong to two deeply divergent evolutionary clades. We quantified field body temperatures (T<sub>b</sub>), laboratory preferred body temperatures (PBT), and used operative temperature data (T<sub>e</sub>) to calculate the effectiveness of thermoregulation (<em>E</em>). During one year in all populations, we further exposed half of the lizards to a cold or a hot acclimation treatment to test for plasticity in the thermal behavior. The environment at the southern range limit was characterized by cooler weather and lower T<sub>e</sub>. Despite that, females had higher T<sub>b</sub> and both males and females had higher PBT in the southernmost population (or clade) than in the northernmost populations. Acclimation to cold conditions led to higher PBT in all populations suggesting that plastic responses to thermal conditions, instead of evolutionary history, may contribute to geographic variation. Lizards regulated moderately well their body temperature (<em>E≈</em>0.7): they avoided warm microhabitats in the northern range but capitalized on warm microhabitats in the southern range. We review literature data to show that <em>Liolaemus</em> species increase their thermoregulation efficiency in thermally challenging environments. Altogether, this indicates that habitats of low thermal quality generally select against thermoconformity in these lizards.
description: This study was funded by a research project Fondecyt no 11121365 from the Comision Nacional de Investigación Científica y Tecnológica de Chile (CONICYT) to P. Artacho. All protocols were approved by the National Agency of Agriculture and Livestock (SAG, Servicio Agrícola y Ganadero) and the Bioethics Committee of the Austral University of Chile (permit 2833). D.L. Moreno Azócar kindly provided unpublished operative temperature data.
DOI: 10.48370/ofd/wny9ci
title: Jaskier leżący (Ranunculus reptans L.), 4125

description: Herbarium
DOI: 10.5281/zenodo.4569513
title: Calcareous nannofossil size and abundance response to the Messinian Salinity Crisis onset and paleoenvironmental dynamics: dataset 2021.

description: The file contains calcareous nannofossils (<em>Helicosphaera carteri, Sphenolithus abies, Umbilicosphaera rotula, Coccolithus pelagicus, Reticulofenestra minuta</em>) biometry data collected in the Messinian Perales section (Sorbas Basin, Spain) and in the Banengo and Pollenzo sections (Piedmont Basin, Italy)
DOI: 10.5281/zenodo.4569512
title: Calcareous nannofossil size and abundance response to the Messinian Salinity Crisis onset and paleoenvironmental dynamics: dataset 2021.

description: The file contains calcareous nannofossils (<em>Helicosphaera carteri, Sphenolithus abies, Umbilicosphaera rotula, Coccolithus pelagicus, Reticulofenestra minuta</em>) biometry data collected in the Messinian Perales section (Sorbas Basin, Spain) and in the Banengo and Pollenzo sections (Piedmont Basin, Italy)
DOI: 10.5281/zenodo.4288748
title: Data for Developmental cell programs are co-opted in inflammatory skin disease - filtered, annotated anndata object

description: Dataset to accompany BioRxiv preprint "Poised cell circuits in human skin are activated in disease" (https://www.biorxiv.org/content/10.1101/2020.11.05.369363v1). Data in AnnData (h5ad) format. Preprocessed to exclude doublets and low quality cells (&lt;200 genes and &gt;20% mitochondrial content). Healthy.h5ad includes neighborhood graph and UMAP coordinates and annotation from the manuscript in figure 1B. Full dataset with annotation ("combined") in obs.
description: This has been updated - the previous version had multiple old annotations that are no longer in use,
DOI: 10.48370/ofd/l40mwf
title: Jaskier leżący (Ranunculus reptans L.), 4129

description: Herbarium
DOI: 10.6084/m9.figshare.14134847
title: RS_NAS_models_1.0

description: Weights of the surrogate models
DOI: 10.17632/57nrc49stj.1
title: Data for: Synergistic Material-Topography Combinations to Achieve Immunomodulatory Osteoinductive Biomaterials

description: Raw human immortalized mesenchymal stem cell (hiMSC) and human macrophage cell data from ChemoTopoChip screens included in Excel (.xlsx) format. CellProfiler (Carpenter et al. 2006) generated topographical descriptors included in Excel (.xlsx) format. hiMSC, human macrophage and illumination correction CellProfiler (Carpenter et al. 2006) pipelines included in CellPropfiler (.cppr) format.
DOI: 10.5517/ccdc.csd.cc26yy8d
title: CCDC 2054564: Experimental Crystal Structure Determination

description: Related Article: Arnold L. Rheingold|2021|CSD Communication|||
DOI: 10.6084/m9.figshare.14134751.v1
title: Supplementary Table S2: Zircon in-situ Hf isotopic compositions for the Ordovician–Silurian granitoids in southern Yunnan. Tracking Prototethyan assembly felsic magmatic suites in southern Yunnan (SW China): Evidence for an Early Ordovician–Early Silurian arc-back arc system

description: <b>Supplementary Table S2:</b> Zircon in-situ Hf isotopic compositions for the Ordovician–Silurian granitoids in southern Yunnan.
DOI: 10.6084/m9.figshare.14134748.v1
title: Supplementary Table S3: Major oxides, trace elemental and Sr–Nd isotopic data for the Ordovician–Silurian granitoids in southern Yunnan. Tracking Prototethyan assembly felsic magmatic suites in southern Yunnan (SW China): Evidence for an Early Ordovician–Early Silurian arc-back arc system

description: <b>Supplementary Table S3:</b> Major oxides, trace elemental and Sr–Nd isotopic data for the Ordovician–Silurian granitoids in southern Yunnan.