cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11472585
title: Electrical recordings with electrodes in sodium chloride solution

description: This data contains electrical measurements with dry silver/silver chloride electrodes (6 mm diameter), stainless steel electrodes (5 mm diameter) and aluminum electrodes (5 mm diameter) in sodium chloride solution. The measurements were done with a three electrode system that enables monopolar recordings under the measurement electrodes. In experiment 1, different low frequency AC voltages were applied(sinusoidal and triangular with different amplitudes and frequencies) and the resulting currents were measured. In experiment 2, 3 series of DC voltage pulses were applied (5 seconds in high state and 5 seconds in low state) and the resulting currents were measured. <br>In both files: Column number one gives information about the subject number, column number 2 which type of subject, columns 3 to 6 give information which voltage was applied, number 7 is the number of measurement within one subject. Column 8 gives information about which quantity (time, applied voltage, measured current, the data points (from column 8 to the last column) belong to.<br>All recordings were done with 2000 samples per period except of the recordings on objects 15 and 16 in experiment that were done with 500 samples per period.<br>
DOI: 10.6084/m9.figshare.11472585.v1
title: Electrical recordings with electrodes in sodium chloride solution

description: This data contains electrical measurements with dry silver/silver chloride electrodes (6 mm diameter), stainless steel electrodes (5 mm diameter) and aluminum electrodes (5 mm diameter) in sodium chloride solution. The measurements were done with a three electrode system that enables monopolar recordings under the measurement electrodes. In experiment 1, different low frequency AC voltages were applied(sinusoidal and triangular with different amplitudes and frequencies) and the resulting currents were measured. In experiment 2, 3 series of DC voltage pulses were applied (5 seconds in high state and 5 seconds in low state) and the resulting currents were measured. <br>In both files: Column number one gives information about the subject number, column number 2 which type of subject, columns 3 to 6 give information which voltage was applied, number 7 is the number of measurement within one subject. Column 8 gives information about which quantity (time, applied voltage, measured current, the data points (from column 8 to the last column) belong to.<br>All recordings were done with 2000 samples per period except of the recordings on objects 15 and 16 in experiment that were done with 500 samples per period.<br>
DOI: 10.6084/m9.figshare.11472456
title: A sprinkle of emotions vs. a pinch of crossmodality: Towards globally meaningful sonic seasoning strategies for tasting experiences

description: This dataset represents a multivariate ordinal approach data analysis, for non-equally spaced threshold for the latent (continuous) measurements, which additionally allows for flexibility of non-symmetric ordinal outcomes across the ordinal scales.
DOI: 10.6084/m9.figshare.11472456.v1
title: A sprinkle of emotions vs. a pinch of crossmodality: Towards globally meaningful sonic seasoning strategies for tasting experiences

description: This dataset represents a multivariate ordinal approach data analysis, for non-equally spaced threshold for the latent (continuous) measurements, which additionally allows for flexibility of non-symmetric ordinal outcomes across the ordinal scales.
DOI: 10.6084/m9.figshare.11472330
title: Sequences of tet(X)-bearing plasmidome, ICE and WGS

description: The 27 tet(X4)-bearing plasmid sequences and 1 tet(X6)-bearing ICE sequence were deposited here for reference. The Nanopore long reads were shared for understanding the tandem repeats of tet(X4). Also, 26 whole genome sequences assembled by Illumina short-read data were shared here.
DOI: 10.6084/m9.figshare.11472321
title: Protein Recovery of Modern Antler (P29) and Modern Bone (P55) Reference Material from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: The table includes detected proteins, number of razor+unique peptides and sequence coverage for both P29 and P55.
DOI: 10.6084/m9.figshare.11472330.v1
title: Sequences of tet(X)-bearing plasmidome and ICE

description: The 27 tet(X4)-bearing plasmid sequences and 1 tet(X6)-bearing ICE sequence were deposited here for reference. Also, the Nanopore long reads were shared for understanding the tandem repeats of tet(X4).
DOI: 10.6084/m9.figshare.11472321.v1
title: Protein Recovery of Modern Antler (P29) and Modern Bone (P55) Reference Material from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: The table includes detected proteins, number of razor+unique peptides and sequence coverage for both P29 and P55.
DOI: 10.6084/m9.figshare.11472330.v2
title: Sequences of tet(X)-bearing plasmidome and ICE

description: The 27 tet(X4)-bearing plasmid sequences and 1 tet(X6)-bearing ICE sequence were deposited here for reference. The Nanopore long reads were shared for understanding the tandem repeats of tet(X4). Also, 26 whole genome sequences assembled by Illumina short-read data were shared here.
DOI: 10.6084/m9.figshare.11472330.v3
title: Sequences of tet(X)-bearing plasmidome, ICE and WGS

description: The 27 tet(X4)-bearing plasmid sequences and 1 tet(X6)-bearing ICE sequence were deposited here for reference. The Nanopore long reads were shared for understanding the tandem repeats of tet(X4). Also, 26 whole genome sequences assembled by Illumina short-read data were shared here.
DOI: 10.6084/m9.figshare.11472315
title: Protein recovery from the ring from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: This table contains identified proteins, peptides and taxonomic assignment recovered from the broken finger ring from Syltholm
DOI: 10.6084/m9.figshare.11472318
title: Radiocarbon dates from Syltholm 906-II from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: A total of 70 14C dates from the Syltholm 906-II excavation, near Rødbyhavn in Denmark. The dates span the Mesolithic Neolithic transition, but shows high activity during the Early Neolithic period.
DOI: 10.6084/m9.figshare.11472318.v1
title: Radiocarbon dates from Syltholm 906-II from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: A total of 70 14C dates from the Syltholm 906-II excavation, near Rødbyhavn in Denmark. The dates span the Mesolithic Neolithic transition, but shows high activity during the Early Neolithic period.
DOI: 10.6084/m9.figshare.11472312
title: FASTA file of published type 1 collagen sequences from red deer and elk from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: The database was prepared using previously published type 1 collagen sequences from Cervus elaphus and Alces alces published by Welker et al (2016). Missing amino acids in the Alces and Cervus collagen sequences were substituted with ones from the same positions from the Bos taurus sequence (obtained from UniProt, 20-07-18).
DOI: 10.6084/m9.figshare.11472315.v1
title: Protein recovery from the ring from The biomolecular characterization of a finger ring contextually dated to the emergence of the Early Neolithic from Syltholm, Denmark

description: This table contains identified proteins, peptides and taxonomic assignment recovered from the broken finger ring from Syltholm
DOI: 10.6084/m9.figshare.11471907
title: MOESM8 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 8: SI 8. Optimisation Results. Results for optimisation analyses of SHL data onto three topologies.
DOI: 10.6084/m9.figshare.11471907.v1
title: MOESM8 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 8: SI 8. Optimisation Results. Results for optimisation analyses of SHL data onto three topologies.
DOI: 10.6084/m9.figshare.11471901
title: MOESM7 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 7: SI 7. Input data for the optimisation character analyses. Complete input file for the optimisation analyses which were run in the program PAUP* [89], with coding for all three tested topologies.
DOI: 10.6084/m9.figshare.11471895
title: MOESM6 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 6: SI 6. Input data for two phylogenetic analyses. Two text files. The first file (SI 6.1) includes the complete input file with all included data for the combined phylogenetic analysis conducted using Bayesian methods. The second file (SI 6.2) includes the input for the parsimony phylogenetic analysis of morphological data.
DOI: 10.6084/m9.figshare.11471892
title: MOESM5 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 5: SI 5. Video footage of 3-dimensional models for the syrinx, hyoid, and larynx of the Southern Cassowary. Three individual short videos of the 3D models of the syrinx, hyoid, and larynx. The images turn on a single axis to show the structures from various angles.
DOI: 10.6084/m9.figshare.11471895.v1
title: MOESM6 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 6: SI 6. Input data for two phylogenetic analyses. Two text files. The first file (SI 6.1) includes the complete input file with all included data for the combined phylogenetic analysis conducted using Bayesian methods. The second file (SI 6.2) includes the input for the parsimony phylogenetic analysis of morphological data.
DOI: 10.6084/m9.figshare.11471892.v1
title: MOESM5 of The phylogenetic significance of the morphology of the syrinx, hyoid and larynx, of the southern cassowary, Casuarius casuarius (Aves, Palaeognathae)

description: Additional file 5: SI 5. Video footage of 3-dimensional models for the syrinx, hyoid, and larynx of the Southern Cassowary. Three individual short videos of the 3D models of the syrinx, hyoid, and larynx. The images turn on a single axis to show the structures from various angles.
DOI: 10.6084/m9.figshare.11471859
title: MOESM2 of Population structure and genetic history of Tibetan Terriers

description: Additional file 2: Table S1. Breeds and number of dogs included in the analyses. The breeds and number of dogs per breed, used in this study are listed.
DOI: 10.6084/m9.figshare.11471859.v1
title: MOESM2 of Population structure and genetic history of Tibetan Terriers

description: Additional file 2: Table S1. Breeds and number of dogs included in the analyses. The breeds and number of dogs per breed, used in this study are listed.
DOI: 10.6084/m9.figshare.11471856
title: MOESM9 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 9: Table S6. Accessory genes found exclusively in each sequence cluster
DOI: 10.6084/m9.figshare.11471850
title: MOESM8 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 8: Table S5. List of dN, dS and dN/dS for every C. sakazakii core gene calculated for every pair of genome. (CSV 244 kb)
DOI: 10.6084/m9.figshare.11471856.v1
title: MOESM9 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 9: Table S6. Accessory genes found exclusively in each sequence cluster
DOI: 10.6084/m9.figshare.11471850.v1
title: MOESM8 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 8: Table S5. List of dN, dS and dN/dS for every C. sakazakii core gene calculated for every pair of genome. (CSV 244 kb)
DOI: 10.6084/m9.figshare.11471841
title: MOESM6 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 6: Table S3. Number of genes in each gene category of the pan-genome (core, soft core, shell, cloud genes). Shown are values for the entire genus and for each Cronobacter species.
DOI: 10.6084/m9.figshare.11471844
title: MOESM7 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 7: Table S4. List of C. sakazakii core genes inferred by Roary
DOI: 10.6084/m9.figshare.11471841.v1
title: MOESM6 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 6: Table S3. Number of genes in each gene category of the pan-genome (core, soft core, shell, cloud genes). Shown are values for the entire genus and for each Cronobacter species.
DOI: 10.6084/m9.figshare.11471844.v1
title: MOESM7 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 7: Table S4. List of C. sakazakii core genes inferred by Roary
DOI: 10.6084/m9.figshare.11471838
title: MOESM5 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 5: Table S2. ANI values (%) for each pairwise genome comparison of C. sakazakii and related species.
DOI: 10.6084/m9.figshare.11471838.v1
title: MOESM5 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 5: Table S2. ANI values (%) for each pairwise genome comparison of C. sakazakii and related species.
DOI: 10.6084/m9.figshare.11471832
title: MOESM4 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 4: Table S1. Accession numbers and genome characteristics of the 285 Cronobacter genomes used in this study.
DOI: 10.6084/m9.figshare.11471832.v1
title: MOESM4 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 4: Table S1. Accession numbers and genome characteristics of the 285 Cronobacter genomes used in this study.
DOI: 10.6084/m9.figshare.11471802
title: MOESM15 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 15: Table S12. Total length of recombined DNA in each Cronobacter genome
DOI: 10.6084/m9.figshare.11471802.v1
title: MOESM15 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 15: Table S12. Total length of recombined DNA in each Cronobacter genome
DOI: 10.6084/m9.figshare.11471796
title: MOESM14 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 14: Table S11. List of recombined genes in C. sakazakii inferred by fastGEAR
DOI: 10.6084/m9.figshare.11471796.v1
title: MOESM14 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 14: Table S11. List of recombined genes in C. sakazakii inferred by fastGEAR
DOI: 10.6084/m9.figshare.11471787
title: MOESM13 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 13: Table S10. Recombination parameters calculated by mcorr
DOI: 10.6084/m9.figshare.11471787.v1
title: MOESM13 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 13: Table S10. Recombination parameters calculated by mcorr
DOI: 10.6084/m9.figshare.11471781
title: MOESM12 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 12: Table S9. Matrix showing the presence or absence of antibiotic resistance and virulence genes identified by ABRicate
DOI: 10.6084/m9.figshare.11471781.v1
title: MOESM12 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 12: Table S9. Matrix showing the presence or absence of antibiotic resistance and virulence genes identified by ABRicate
DOI: 10.6084/m9.figshare.11471772
title: MOESM11 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 11: Table S8. Functional enrichment of accessory genes calculated by PANTHER
DOI: 10.6084/m9.figshare.11471772.v1
title: MOESM11 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 11: Table S8. Functional enrichment of accessory genes calculated by PANTHER
DOI: 10.6084/m9.figshare.11471766
title: MOESM10 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 10: Table S7. Accessory genes found exclusively in each ecological source
DOI: 10.6084/m9.figshare.11471766.v1
title: MOESM10 of Pan-genome diversification and recombination in Cronobacter sakazakii, an opportunistic pathogen in neonates, and insights to its xerotolerant lifestyle

description: Additional file 10: Table S7. Accessory genes found exclusively in each ecological source
DOI: 10.6084/m9.figshare.11471748
title: MOESM3 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 3: Table S3. DEGs in SSc skin
DOI: 10.6084/m9.figshare.11471748.v1
title: MOESM3 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 3: Table S3. DEGs in SSc skin
DOI: 10.6084/m9.figshare.11471742
title: MOESM2 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 2: Table S2. DEGs in SSc PBMC
DOI: 10.6084/m9.figshare.11471742.v1
title: MOESM2 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 2: Table S2. DEGs in SSc PBMC
DOI: 10.6084/m9.figshare.11471733
title: MOESM1 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 1: Table S1. DEGs in SSc lung
DOI: 10.6084/m9.figshare.11471733.v1
title: MOESM1 of Analysis of gene expression profiles and protein-protein interaction networks in multiple tissues of systemic sclerosis

description: Additional file 1: Table S1. DEGs in SSc lung
DOI: 10.6084/m9.figshare.11471664
title: MOESM9 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 9: Table S5. Rearrangements that were in common with previous study by Furuta et al [35].
DOI: 10.6084/m9.figshare.11471664.v1
title: MOESM9 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 9: Table S5. Rearrangements that were in common with previous study by Furuta et al [35].
DOI: 10.6084/m9.figshare.11471658
title: MOESM8 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 8: Table S4. Information of the 41 identified inversions.
DOI: 10.6084/m9.figshare.11471658.v1
title: MOESM8 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 8: Table S4. Information of the 41 identified inversions.
DOI: 10.6084/m9.figshare.11471649
title: MOESM7 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 7: Table S3. Consensus based gene order of 72 Helicobacter pylori strains.
DOI: 10.6084/m9.figshare.11471649.v1
title: MOESM7 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 7: Table S3. Consensus based gene order of 72 Helicobacter pylori strains.
DOI: 10.6084/m9.figshare.11471640
title: MOESM6 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 6: Table S2. Gene order of 72 Helicobacter pylori strains before and after rotation and flipping.
DOI: 10.6084/m9.figshare.11471640.v1
title: MOESM6 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 6: Table S2. Gene order of 72 Helicobacter pylori strains before and after rotation and flipping.
DOI: 10.6084/m9.figshare.11471616
title: MOESM1 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 1: Table S1. 72 Helicobacter pylori strains information.
DOI: 10.6084/m9.figshare.11471616.v1
title: MOESM1 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 1: Table S1. 72 Helicobacter pylori strains information.
DOI: 10.6084/m9.figshare.11471607
title: MOESM12 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 12: Table S7. Matrix representing the presence or absence of inversions in each strain. Legend of the pie charts in Fig. 3a.
DOI: 10.6084/m9.figshare.11471607.v1
title: MOESM12 of Rearrangement analysis of multiple bacterial genomes

description: Additional file 12: Table S7. Matrix representing the presence or absence of inversions in each strain. Legend of the pie charts in Fig. 3a.
DOI: 10.6084/m9.figshare.11471601
title: MOESM3 of Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize

description: Additional file 3: Table S3. List of genotypes for 50 individual jaguars identified in the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor.
DOI: 10.6084/m9.figshare.11471601.v1
title: MOESM3 of Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize

description: Additional file 3: Table S3. List of genotypes for 50 individual jaguars identified in the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor.