cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17882/43109
title: Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées): réaliser une conversion d’un set d’images d’un format à un autre format d’images

description: Le logiciel TNPC (Traitement Numérique des Pièces Calcifiées, www.tnpc.fr) permet de réaliser des acquisitions d’images à partir de microscopes, loupes binoculaires, scanners ou tout autre système d’observation combiné à une caméra numérique. Il a été développé par l’institut Ifremer (initialement par le LASAA, laboratoire de Sclérochronologie des Animaux Aquatiques) depuis une trentaine années en partenariat avec la société VSG (Visualization Sciences Group) pour répondre spécifiquement aux besoins en Sclérochronologie, c’est à dire l’interprétation des pièces calcifiées (otolithes, écailles, vertèbres, coquille, illicium, statolithes…). Ainsi, en plus des acquisitions, il permet d’utiliser de nombreuses fonctions en particulier, l’interprétation d’images individuelles ou en base de données et de travailler sur les mesures, analyses de forme … Cette vidéo présente spécifiquement le tutoriel pour la fonction du logiciel TNPC : Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées): réaliser une conversion d’un set d’images d’un format à un autre format d’images Elle aborde différents points: - créer une base de données avec un groupe d’images - paramétrer le changement du format d’images, - sélection le dossier d’exportation des images, - appliquer la modification sur la totalité des images
DOI: 10.17882/43108
title: Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées): réaliser des analyses de forme automatique à l’aide d’une base de données

description: Le logiciel TNPC (Traitement Numérique des Pièces Calcifiées, www.tnpc.fr) permet de réaliser des acquisitions d’images à partir de microscopes, loupes binoculaires, scanners ou tout autre système d’observation combiné à une caméra numérique. Il a été développé par l’institut Ifremer (initialement par le LASAA, laboratoire de Sclérochronologie des Animaux Aquatiques) depuis une trentaine années en partenariat avec la société VSG (Visualization Sciences Group) pour répondre spécifiquement aux besoins en Sclérochronologie, c’est à dire l’interprétation des pièces calcifiées (otolithes, écailles, vertèbres, coquille, illicium, statolithes…). Ainsi, en plus des acquisitions, il permet d’utiliser de nombreuses fonctions en particulier, l’interprétation d’images individuelles ou en base de données et de travailler sur les mesures, analyses de forme … Cette vidéo présente spécifiquement le tutoriel pour la fonction du logiciel TNPC : Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées) : réaliser des analyses de forme automatique à l’aide d’une base de données Elle aborde différents points: - intégration d’images en base de données, - sélection de la méthode permettant d’identifier la forme, - choix et sélection d’un groupe de mesures, - application de l’extraction de forme sur la totalité des images en base de données, - extraction des données de toutes les analyses de forme appliquées selon le même processus.
DOI: 10.17882/43107
title: Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées): réaliser des analyses de formes individuelles

description: Le logiciel TNPC (Traitement Numérique des Pièces Calcifiées, www.tnpc.fr) permet de réaliser des acquisitions d’images à partir de microscopes, loupes binoculaires, scanners ou tout autre système d’observation combiné à une caméra numérique. Il a été développé par l’institut Ifremer (initialement par le LASAA, laboratoire de Sclérochronologie des Animaux Aquatiques) depuis une trentaine années en partenariat avec la société VSG (Visualization Sciences Group) pour répondre spécifiquement aux besoins en Sclérochronologie, c’est à dire l’interprétation des pièces calcifiées (otolithes, écailles, vertèbres, coquille, illicium, statolithes…). Ainsi, en plus des acquisitions, il permet d’utiliser de nombreuses fonctions en particulier, l’interprétation d’images individuelles ou en base de données et de travailler sur les mesures, analyses de forme … Cette vidéo présente spécifiquement le tutoriel pour la fonction du logiciel TNPC : Utilisation du logiciel TNPC (Traitement Numérique des Pièces Calcifiées) : Réaliser des analyses de formes individuelles. Elle aborde différents points: - sélection de la méthode permettant d’identifier la forme, - choix et sélection d’un groupe de mesures, - extraction des données ainsi mesurées.
DOI: 10.17882/43082
title: HOMER Campaign : Mooring time series

description: Located in Northwestern France, the Bay of Brest constitutes a coastal macrotidal and semi-enclosed ecosystem marked with fast mixing exchanges with the Atlantic Ocean through a narrow and deep channel to its west-side. To study the intensity of current in small coves, two moorings were deployed with ADCP on the seabed and temperature sensors at different levels. They were first put in the « Anse de l’Auberlac’h » (A) and the « Anse du Fret » (B) for one month and then move to « Lomergat » (C) and the « Anse du Roz » (D) for another month. More detailed informations is given in the deployment sum-up table. ADCP data were processed with WinADCP software and filtered in order to get 10 minutes average data. More technical informations on MASTODON sensor used for temperature measurments can be found in « Mastodon Mooring System To Measure Seabed Temperature, 2015: Lazure P, Le Berre D., Gautier L, 56,10, pp19-22 Sea Technology ».
DOI: 10.17882/42916
title: Scattering by pure seawater: Effect of salinity, Optics Express, Vol. 17, No. 7, 5698-5710

description: Code to calculate (betasw,beta90sw,bsw) as a function of (lambda,Tc,theta,S,delta) where lambda (nm): wavelength Tc: temperauter in degree Celsius, must be a scalar S: salinity, must be scalar delta: depolarization ratio, if not provided, default = 0.039 will be used. betasw: volume scattering at angles defined by theta. Its size is [x y], where x is the number of angles (x = length(theta)) and y is the number of wavelengths in lambda (y = length(lambda)) beta90sw: volume scattering at 90 degree. Its size is [1 y] bw: total scattering coefficient. Its size is [1 y] for backscattering coefficients, divide total scattering by 2
DOI: 10.17882/42795
title: Otolith removal of albacore (Thunnus alalunga)

description: This short video details an effective way for collecting albacore (Thunnus alalunga) otoliths from headed.
DOI: 10.17882/42794
title: Otolith removal of swordfish (Xiphias gladius)

description: This short video details an effective way for collecting swordfish (Xiphias gladius) otoliths from headed.
DOI: 10.17882/42005
title: Biological Data for the brilliant pomfret (Eumegistus illustris) off the coast of Reunion Island (SW Indian Ocean) between March 2014 and March 2015

description: The data come from the European project “ANCRE-DMX2” (Indicateurs biologiques et écologiques pour une gestion durable des stocks de poissons DéMersauX profonds d’intérêt halieutique à La Réunion). The brilliant pomfret (Eumegistus illustris) occurs in the western part of the Indian Ocean and the western and central Pacific Ocean. A total of 148 E. illustris were sampled in the landings of the French local artisanal fisheries (deep-water handline on electric reel), in the eastern part of Reunion Island (21°.10 S latitude; 55°.30 E longitude). Monthly samples were collected between March 2014 and March 2015. All fresh specimens were examined in the laboratory for Total Length (TL, mm), Standard Length (SL, mm), Fork length (FL, mm) Total wet weight (W, g) and sex. Since growth of E. illustris has not been investigated before, calibration of the method for age and growth structure determination was needed. Different calcified structures (otolith, scale, opercular bone, vertebra…) can be used for the age determination of fishes. For each fish, the sagittal otoliths, a few scales and opercular bones were used in order to estimate and compare the age of fish between three calcified structures. Morphological parameters of otoliths (length, width, area and weight) were extracted by the TNPC software (http://www.tnpc.fr/fr/tnpc.html). Different parts of opercular (opercular and sub_opercular bones) were sampled from left and right head sides. Depending of fish size, opercular were boiled during 5 to 15 minutes to clean any excess of flesh. The age data were estimated from only opercular bones.
DOI: 10.17882/41845
title: Supporting Information of effects of Heating on AZAs

description: This dataset is composed by the supporting information of Kilcoyne Jane, Mccarron Pearse, Hess Philipp, Miles Christopher O. (2015). Effects of Heating on Proportions of Azaspiracids 1–10 in Mussels ( Mytilus edulis ) and Identification of Carboxylated Precursors for Azaspiracids 5, 10, 13, and 15. Journal of Agricultural and Food Chemistry, 63(51), 10980-10987. http://dx.doi.org/10.1021/acs.jafc.5b04609
DOI: 10.17882/41146
title: SAPERCHAIS-HF data and metadata

description: The SAPERCHAIS program (Suivi des Apports marins et terrigènes dans la mer des PERtuis CHarentAIS) was developed to monitor environmental fluctuations in the Pertuis Charentais Sea by an hydrological watchfulness. Seven stations, representatives of terrigenous or marine inputs, have been followed from 2011 to 2014. From north to south, the main four rivers of the Pertuis, Le Lay, La Sèvre, Charente and Seudre, and the three maritime inputs of each strait, Breton, Antioche and Maumusson. At each station, temperature and salinity were recorded in situ, just below the surface, with a high frequency resolution (10 minutes) . This work was supported by grants from Région Poitou-Charentes and European Regional Development Fund to the Ifremer "Developpement Durable de la Pêche et de la Conchyliculture" project.
DOI: 10.17882/41101
title: Ocean Salinity Stratification (OSS)

description: This dataset is composed by the climatological seasonal field of the Ocean Salinity Stratification as defined from the Brunt-Vaisala frequency limited to the upper 300 m depth. The details are given in Maes, C., and T. J. O’Kane (2014), Seasonal variations of the upper ocean salinity stratification in the Tropics, J. Geophys. Res. Oceans, 119, 1706–1722, doi:10.1002/2013JC009366.
DOI: 10.5281/zenodo.7884749
title: Data from 'Relationships among functional traits and with phylogeny in 164 southern Australian eucalypts'

description: Median trait data and accompanying description of included traits and units for the analysis in the manuscript 'Relationships among functional traits and with phylogeny in 164 southern Australian eucalypts' authored by Antoinette M. Portelli, Saras M. Windecker, Laura J. Pollock, Will. C. Neal, William K. Morris, Rohan Khot and Peter A. Vesk. Funding for this project provided by Eucalypt Australia and the Victorian Government Department of Environment, Land, Water and Planning.
description: Observation level data will be available through AusTraits.
DOI: 10.5281/zenodo.7884748
title: Data from 'From mallees to mountain ash, specific leaf area is coordinated with eucalypt tree stature, resprouting, stem construction, and fruit size'

description: Median trait data and accompanying description of included traits and units for the analysis in the manuscript 'From mallees to mountain ash, specific leaf area is coordinated with eucalypt tree stature, resprouting, stem construction, and fruit size' authored by Antoinette M. Portelli, Saras M. Windecker, Laura J. Pollock, Will. C. Neal, William K. Morris, Rohan Khot and Peter A. Vesk. Funding for this project provided by Eucalypt Australia and the Victorian Government Department of Environment, Land, Water and Planning.
description: Observation level data will be available through AusTraits.
DOI: 10.5281/zenodo.8313641
title: Data from 'From mallees to mountain ash, specific leaf area is coordinated with eucalypt tree stature, resprouting, stem construction, and fruit size'

description: Median trait data and accompanying description of included traits and units for the analysis in the manuscript 'From mallees to mountain ash, specific leaf area is coordinated with eucalypt tree stature, resprouting, stem construction, and fruit size' authored by Antoinette M. Portelli, Saras M. Windecker, Laura J. Pollock, Will. C. Neal, William K. Morris, Rohan Khot and Peter A. Vesk. Funding for this project provided by Eucalypt Australia and the Victorian Government Department of Environment, Land, Water and Planning.
description: Observation level data will be available through AusTraits.
DOI: 10.17882/39746
title: Observations for Synaphobranchus kaupii from bait experiments carried out in the Bay of Biscay in 2002 using ROV Victor 6000

description: The data come from bait experiments that were carried out at three study sites (Meriadzek Terrace, terrace located between the canyon of Belle Île and the canyon of St Nazaire referred to as St Nazaire Terrace, and Belle Île Canyon) on the continental slope of the Bay of Biscay during the VITAL cruise in late August and early September 2002 using the ROV Victor 6000. A full description of the experiments and results can be found in Trenkel and Lorance (2011). The depth range 1100 – 1500 m was investigated in all sites by perpendicular strip transects starting from the deepest point and moving up slope (see full description in Trenkel et al 2004). Bait experiments were carried out at all three sites at regular intervals (every 12 hours) along the transects. Two types of bait were used, a standardised aquaculture paste and cod fillets (only on St Nazaire Terrace). The paste was made of fish farming food pellets mixed with sea water (480 g per liter). Sardine oil was added (3 cm3 per liter) to increase the smell of the bait. The bait was filled into identical bottles (~4 cm diameter opening, 15.5 cm high). At the beginning of the experiment the ROV opened the bottle, put it onto the ground and retreated a few meters perpendicular to the current to observe fish arrival. After it was judged that no more individuals were going to arrive, the ROV shook the bottle to create a new plume and continued observations. In one experiment the bottle was shaken a second time. Video tapes were analysed in the laboratory after the cruise for Kaup's arrowtooth eel (Synaphobranchus kaupii). For each individual arriving, the time and direction of arrival, the initial behaviour and the reaction to the bait were noted. Initial behaviour was categorised by the position in the water column: near the bottom (&lt;1 body length) or higher up in the water column (&gt;1 body length) and the locomotion type: drifting or moving with current (“with current”), swimming against current or swimming perpendicular to the current. Reaction to the bait was categorised as not interested, attracted, touching bait bottle or eating bait. When possible the speed of the first individual arriving swimming against the current was estimated. Using the size of the bait bottle as a yard stick the time taken for swimming a certain distance (1 cm on the video screen) was recorded on two occasions and used to calculate the average arrival speed. At the deepest point sampled at each site (1460-1550m), an autonomous lander equipped with a current meter was deployed for three days. Data from these sensors were recorded every minute to every two minutes. A temperature probe was carried by the ROV.
DOI: 10.6084/m9.figshare.24052953.v1
title: Assessing the relationship between employees’ visual privacy and work-process interactions in open-plan offices through visibility analyses

description: <b>Supplementary Data</b>
DOI: 10.5281/zenodo.8122877
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gertrude Simmons Burlingham, http://www.wikidata.org/entity/Q3298330. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3298330
DOI: 10.5281/zenodo.8122878
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gertrude Simmons Burlingham, http://www.wikidata.org/entity/Q3298330. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3298330
DOI: 10.5281/zenodo.8317366
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gertrude Simmons Burlingham, http://www.wikidata.org/entity/Q3298330. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3298330
DOI: 10.5281/zenodo.8317363
title: Raw Data: Imaging inter-valley coherent order in magic-angle twisted trilayer graphene

description: Raw Data: Imaging inter-valley coherent order in magic-angle twisted trilayer graphene
DOI: 10.5281/zenodo.8317362
title: Raw Data: Imaging inter-valley coherent order in magic-angle twisted trilayer graphene

description: Raw Data: Imaging inter-valley coherent order in magic-angle twisted trilayer graphene
DOI: 10.5281/zenodo.8304135
title: Music Score Generation Dataset

description: This dataset was created for automatic score-to-score generation for piano.
DOI: 10.5281/zenodo.8304134
title: Music Score Generation Dataset

description: This dataset was created for automatic score-to-score generation for piano.
DOI: 10.5281/zenodo.8317402
title: Original dataset of the study entitled Effects of trabectedin on the gut bacterial communities structure of the zebrafish Danio rerio

description: <strong>Original data set_Spreadsheet Genus</strong> Relative abundance of the bacterial genus found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Family</strong> Relative abundance of the bacterial family found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Order</strong> Relative abundance of the bacterial order found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Class</strong> Relative abundance of the bacterial class found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Phylum</strong> Relative abundance of the bacterial phylum found on the gut of adult male zebrafish under trabectedin exposure
DOI: 10.5281/zenodo.8317401
title: Original dataset of the study entitled Effects of trabectedin on the gut bacterial communities structure of the zebrafish Danio rerio

description: <strong>Original data set_Spreadsheet Genus</strong> Relative abundance of the bacterial genus found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Family</strong> Relative abundance of the bacterial family found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Order</strong> Relative abundance of the bacterial order found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Class</strong> Relative abundance of the bacterial class found on the gut of adult male zebrafish under trabectedin exposure <strong>Original data set_Spreadsheet Phylum</strong> Relative abundance of the bacterial phylum found on the gut of adult male zebrafish under trabectedin exposure
DOI: 10.15472/kqnboi
title: Algas asociadas a fuentes hídricas presentes en el cerro Yerrecuí, municipio de Tadó, Chocó. 2022

description: Los ecosistemas acuáticos ubicados en los tramos altos de las montañas como los cerros, permiten la formación de hábitat de gran singularidad biológica, favoreciendo la ocurrencia de una importante biodiversidad, altos niveles de endemismo y un gran valor cultural y social. Los cerros, son sistemas dinámicos y multifuncionales que se caracterizan por la presencia de redes de drenaje, con diversos cauces y un alto grado de heterogeneidad ambiental, donde buena parte de su funcionamiento depende de los aportes alóctonos. Esta complejidad, es favorecida por diversas interacciones y transiciones entre clima, geomorfología, precipitación, flujo de agua y sistemas ribereños; sin embargo, la calidad de estos ecosistemas, aunque muy lejanos a la urbanización últimamente puede verse afectada por diversas presiones antropogénicas, tanto en su estructura como en los servicios que proporcionan. El deterioro que estos ecosistemas puedan estar comenzando a experimentar tanto en su biodiversidad como en la calidad de sus aguas, está conduciendo a su degradación tanto a escala local, como a escala global, es por eso que dichos cambios han motivado en las últimas décadas al desarrollo de índices bióticos para valorar el efecto de las intervenciones naturales y humanas sobre dichos ecosistemas. Los organismos que son utilizados con mayor frecuencia como bioindicadores en ecosistemas acuáticos son las algas y plantas acuáticos, zooplancton, bacterias, peces y los macroinvertebrados, siendo este grupo, el más empleado en el análisis y monitoreo de fuentes hídricas, destacando aquellos que se basan en el uso de macroinvertebrados bentónicos. Los macroinvertebrados bentó nicos son organismos que ocupan un hábitat con ciertas condiciones ambientales, los cuáles se reflejarán en la estructura de sus comunidades, debido a que estos responden a los cambios ambientales mas ŕ ápido que otros bioindicadores, éstos pueden exhibir respuestas evidentes cuando ya es tarde para el manejo de conservación de cuencas. Sumado a este importante bioindicador, se encuentran las comunidades perifíticas algales, que debido a su posición en la interfase agua-sustrato, desempeñan un papel fundamental en algunos ciclos biogeoquímicos y en la dinámica de los ecosistemas lóticos, adicionalmente, la composición y abundancia de las algas del perifíton reflejan las condiciones ambientales del sistema. Con base en lo dicho anteriormente, el Instituto de investigaciones ambientales del Pacifico IIAP, en su marco de generar conocimiento presenta la información primara que contiene el estado ecológico utilizando la comunidad de algas perifíticas en fuentes hídricas asociadas al cerro Yerrecuí en el municipio de Tadó en el Chocó biogeográfico.
DOI: 10.15468/dl.bcq3by
title: Occurrence Download

description: A dataset containing 102 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Maianthemum robustum (Makino & Honda) LaFrankie"
 ]
}

 The dataset includes 102 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050887-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wz8qub
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ligularia parvifolia C.C.Chang"
 ]
}

 The dataset includes 28 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050890-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tmjun
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazus gracilis Hemsl."
 ]
}

 The dataset includes 124 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050891-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.