cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16200747.v1
title: Taxa_Not_In_16S

description: Taxa absent in 16S gene sequencing but present in shotgun metagenomic sequencing in our 395 samples<br>TaxaName: Name of missing taxa<br>Taxa: Classification level of taxa names (eg. Genus)<br>frequencyPresentInShotgun: Counts of non-zero abundance found in shotgun sequencing(non-zero) / Total number of samples<br>medianRelAbdInShotgun: Median of relative frequency in shotgun metagenomic sequencing of that taxa
DOI: 10.6084/m9.figshare.16200750
title: Taxa_Not_In_Shotgun

description: This file contains taxa that are absent in the output of shotgun metagenomic sequencing but present in 16S gene sequencing in 395 stool samples.<br>TaxaName: Name of missing taxaTaxa: Classification level of taxa names (eg. Genus)frequencyPresentIn16S: Counts of non-zero abundance found in 16S (non-zero) / total number of samplesmedianRelAbdIn16S: Median of relative frequency in 16S sequencing of that taxa
DOI: 10.6084/m9.figshare.16200750.v1
title: Taxa_Not_In_Shotgun

description: This file contains taxa that are absent in the output of shotgun metagenomic sequencing but present in 16S gene sequencing in 395 stool samples.<br>TaxaName: Name of missing taxaTaxa: Classification level of taxa names (eg. Genus)frequencyPresentIn16S: Counts of non-zero abundance found in 16S (non-zero) / total number of samplesmedianRelAbdIn16S: Median of relative frequency in 16S sequencing of that taxa
DOI: 10.6084/m9.figshare.16413252
title: VFDB

description: A VFDB report provides information of the virulence factors in each sample.<br><br>Template: Hit of virulence genes in VFDB<br>Function: Predicted function of the template<br>Genome: Strain names where the template is found<br>Score, Expected, Template_length, Template_Identity, Template_Coverage, Query_Identity, Query_Coverage, Depth, q_value, p_value: Parameters output by VFDB that report how well the match is.<br>shotgunReadcount: Number of reads for each sample after decontamination of human reads<br>RelavantPercentInVF: The number of reads matched to the virulence gene / Total reads matched to virulence genes in the sample<br>PercentageInShotgun: The number of reads matched to the virulence gene / Total reads in the sample<br>SampleID: Sample ID for each shotgun sequencing
DOI: 10.5281/zenodo.5148381
title: ERT dataset

description: ERT dataset
DOI: 10.5281/zenodo.5148380
title: ERT dataset

description: ERT dataset
DOI: 10.6084/m9.figshare.16399284
title: Random Base Editing NGS

description: Whole Genome Sequencing Data and SNP analysis results
DOI: 10.5281/zenodo.5236607
title: Canadian fossil fuel production, greenhouse gas emissions, emissions targets and carbon budgets

description: This spreadsheet shows the amounts of coal, oil and natural gas produced in Canada from 2010 to 2020 using governmental sources. It includes calculations of the corresponding emissions according to a life-cycle analysis. The total greenhouse gas emissions from fossil fuels extracted annually in Canada (including those burned abroad) are computed. McGlade and Ekins (2015) proposed budgets for the production of each type of fossil fuel in order to provide a 67% chance to limit warming to 2.0 °C by 2100. The proportion of each budget that is already spent is calculated. Emissions targets from 21 scenarios originating from five effort-sharing studies are compared with Canadian 2020 emissions to evaluate the difference. Carbon budgets from 18 scenarios originating from seven studies are compared with Canadian cumulative emissions to evaluate the percentage of the budgets within the period 2010-2050 already emitted.
DOI: 10.5281/zenodo.5236606
title: Canadian fossil fuel production, greenhouse gas emissions, emissions targets and carbon budgets

description: This spreadsheet shows the amounts of coal, oil and natural gas produced in Canada from 2010 to 2020 using governmental sources. It includes calculations of the corresponding emissions according to a life-cycle analysis. The total greenhouse gas emissions from fossil fuels extracted annually in Canada (including those burned abroad) are computed. McGlade and Ekins (2015) proposed budgets for the production of each type of fossil fuel in order to provide a 67% chance to limit warming to 2.0 °C by 2100. The proportion of each budget that is already spent is calculated. Emissions targets from 21 scenarios originating from five effort-sharing studies are compared with Canadian 2020 emissions to evaluate the difference. Carbon budgets from 18 scenarios originating from seven studies are compared with Canadian cumulative emissions to evaluate the percentage of the budgets within the period 2010-2050 already emitted.
DOI: 10.5281/zenodo.5236639
title: MSM/RD generated data/plots

description: This repository holds the data generated with the MSM/RD software to produce the plots for the paper: ``Multiscale molecular kinetics by coupling Markov state models and reaction-diffusion dynamics'' by Mauricio J. del Razo, Manuel Dibak, Christof Schütte and Frank Noé. The plots are stored in the plots directory. The plotting scripts are written using jupyter notebooks and require numpy and matplotlib. To produce the plots yourself, just run the notebooks included in this folder. The MSM/RD code is written in c++ with python bindings. The code is still in constant development, and there is no official release. Active development of the code is done on this github repository. The exact version of the code used for the paper can be found on this Zenodo repository.
DOI: 10.5281/zenodo.5236644
title: WOW Nature - Bosco di Prasaccon

description: Air pollution Device Measurements ["pm1","pm2p5","pm4","pm10","humidity"]
DOI: 10.5281/zenodo.5236643
title: WOW Nature - Bosco di Prasaccon

description: Air pollution Device Measurements ["pm1","pm2p5","pm4","pm10","humidity"]
DOI: 10.5281/zenodo.5236660
title: WOW Nature - Bosco del ponte del Quarelo

description: Air pollution Device Measurements ["pm1","pm2p5","pm4","pm10","humidity"]
DOI: 10.5281/zenodo.5236659
title: WOW Nature - Bosco del ponte del Quarelo

description: Air pollution Device Measurements ["pm1","pm2p5","pm4","pm10","humidity"]
DOI: 10.5281/zenodo.5048322
title: News Collections from GDELT

description: Description on: https://github.com/GoloMarcos/OCTCMG
description: Dataset to use One-Class Text Learning
DOI: 10.5281/zenodo.5048321
title: News Collections from GDELT

description: Description on: https://github.com/GoloMarcos/OCTCMG
description: Dataset to use One-Class Text Learning
DOI: 10.25573/serc.13187549
title: Dataset: Soil Redox and Hydropattern control Soil Carbon Stocks across different habitats in Tidal Freshwater Wetlands in a Sub-estuary of the Chesapeake Bay

description: Wetlands contain spatial and temporal variations in hydrology that affect vegetation and soil processes. In this study different wetland habitats were identified in both a natural and restored wetland site that varied in hydropattern (level of surface or ground water over time), with the goal of understanding how inundation impacts redox conditions and soil organic matter. Tidal freshwater wetlands were selected in Maryland, USA along the Patuxent River, a Chesapeake Bay tributary. Five habitats (mudflat, low marsh, high marsh, swamp, and adjacent upland) were selected at Patuxent Wetland Park, a natural wetland, and four habitats (mudflat, low marsh, high marsh, and adjacent upland) were selected at Wootons Landing Wetland Park, a restored wetland. Within each habitat three randomly located plots were established, and a data logging water level recorders were installed at one plot per habitat in February 2014 to monitor water level at 10-minute intervals. Water level depth was also measured manually in two additional observation wells within plots every two weeks for one year from February 2014 to March 2015. Soil cores to a depth of 50 cm were collected and soil C stocks were calculated based on soil bulk density and C percentage. Natural wetland habitats had shallower groundwater than their restored counterparts. Mudflats in both sites were most frequently flooded, followed by marsh and swamp habitats in the natural site. The restored high marsh that was dominated by <i>Phragmites australis</i> had the highest soil redox measurements at 12.5 and 40 cm soil depth (273±27 and 252±33 mv, respectively). Soil C stocks were also significantly higher in the natural compared to the restored wetland (14.8±0.50 and 8.9±0.99, respectively, P &lt;0.0001). Restored mudflat and marsh habitats had similar hydrological regime compared to the natural counterparts, but they had lower soil C stocks. Monitoring of hydrology and vegetation in similar habitats in restored and reference sites may help improve restoration success in achieving specific structural or functional outcomes. Promoting the accumulation of soil organic matter in the restored wetland is not only controlled by the hydropattern, but also by the soil redox conditions that are impacted by the invasion of <i>Phragmites australis</i>.
DOI: 10.25573/serc.13187549.v2
title: Dataset: Soil Redox and Hydropattern control Soil Carbon Stocks across different habitats in Tidal Freshwater Wetlands in a Sub-estuary of the Chesapeake Bay

description: Wetlands contain spatial and temporal variations in hydrology that affect vegetation and soil processes. In this study different wetland habitats were identified in both a natural and restored wetland site that varied in hydropattern (level of surface or ground water over time), with the goal of understanding how inundation impacts redox conditions and soil organic matter. Tidal freshwater wetlands were selected in Maryland, USA along the Patuxent River, a Chesapeake Bay tributary. Five habitats (mudflat, low marsh, high marsh, swamp, and adjacent upland) were selected at Patuxent Wetland Park, a natural wetland, and four habitats (mudflat, low marsh, high marsh, and adjacent upland) were selected at Wootons Landing Wetland Park, a restored wetland. Within each habitat three randomly located plots were established, and a data logging water level recorders were installed at one plot per habitat in February 2014 to monitor water level at 10-minute intervals. Water level depth was also measured manually in two additional observation wells within plots every two weeks for one year from February 2014 to March 2015. Soil cores to a depth of 50 cm were collected and soil C stocks were calculated based on soil bulk density and C percentage. Natural wetland habitats had shallower groundwater than their restored counterparts. Mudflats in both sites were most frequently flooded, followed by marsh and swamp habitats in the natural site. The restored high marsh that was dominated by <i>Phragmites australis</i> had the highest soil redox measurements at 12.5 and 40 cm soil depth (273±27 and 252±33 mv, respectively). Soil C stocks were also significantly higher in the natural compared to the restored wetland (14.8±0.50 and 8.9±0.99, respectively, P &lt;0.0001). Restored mudflat and marsh habitats had similar hydrological regime compared to the natural counterparts, but they had lower soil C stocks. Monitoring of hydrology and vegetation in similar habitats in restored and reference sites may help improve restoration success in achieving specific structural or functional outcomes. Promoting the accumulation of soil organic matter in the restored wetland is not only controlled by the hydropattern, but also by the soil redox conditions that are impacted by the invasion of <i>Phragmites australis</i>.
DOI: 10.25573/serc.13187549.v1
title: Dataset: Soil Redox and Hydropattern control Soil Carbon Stocks across different habitats in Tidal Freshwater Wetlands in a Sub-estuary of the Chesapeake Bay

description: Wetlands contain spatial and temporal variations in hydrology that affect vegetation and soil processes. In this study different wetland habitats were identified in both a natural and restored wetland site that varied in hydropattern (level of surface or ground water over time), with the goal of understanding how inundation impacts redox conditions and soil organic matter. Tidal freshwater wetlands were selected in Maryland, USA along the Patuxent River, a Chesapeake Bay tributary. Five habitats (mudflat, low marsh, high marsh, swamp, and adjacent upland) were selected at Patuxent Wetland Park, a natural wetland, and four habitats (mudflat, low marsh, high marsh, and adjacent upland) were selected at Wootons Landing Wetland Park, a restored wetland. Within each habitat three randomly located plots were established, and a data logging water level recorders were installed at one plot per habitat in February 2014 to monitor water level at 10-minute intervals. Water level depth was also measured manually in two additional observation wells within plots every two weeks for one year from February 2014 to March 2015. Soil cores to a depth of 50 cm were collected and soil C stocks were calculated based on soil bulk density and C percentage. Natural wetland habitats had shallower groundwater than their restored counterparts. Mudflats in both sites were most frequently flooded, followed by marsh and swamp habitats in the natural site. The restored high marsh that was dominated by <i>Phragmites australis</i> had the highest soil redox measurements at 12.5 and 40 cm soil depth (273±27 and 252±33 mv, respectively). Soil C stocks were also significantly higher in the natural compared to the restored wetland (14.8±0.50 and 8.9±0.99, respectively, P &lt;0.0001). Restored mudflat and marsh habitats had similar hydrological regime compared to the natural counterparts, but they had lower soil C stocks. Monitoring of hydrology and vegetation in similar habitats in restored and reference sites may help improve restoration success in achieving specific structural or functional outcomes. Promoting the accumulation of soil organic matter in the restored wetland is not only controlled by the hydropattern, but also by the soil redox conditions that are impacted by the invasion of <i>Phragmites australis</i>.
DOI: 10.6084/m9.figshare.16413252.v1
title: VFDB

description: A VFDB report provides information of the virulence factors in each sample.<br><br>Template: Hit of virulence genes in VFDB<br>Function: Predicted function of the template<br>Genome: Strain names where the template is found<br>Score, Expected, Template_length, Template_Identity, Template_Coverage, Query_Identity, Query_Coverage, Depth, q_value, p_value: Parameters output by VFDB that report how well the match is.<br>shotgunReadcount: Number of reads for each sample after decontamination of human reads<br>RelavantPercentInVF: The number of reads matched to the virulence gene / Total reads matched to virulence genes in the sample<br>PercentageInShotgun: The number of reads matched to the virulence gene / Total reads in the sample<br>SampleID: Sample ID for each shotgun sequencing
DOI: 10.15468/djnr9r
title: Notes on the taxonomy of Potamonautes obesus (A Milne-Edwards, 1868) and Potamonautes calcaratus (Gordon, 1929) (Brachyura: Potamoidea: Potamonautidae) from eastern and southern Africa

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reed, Sadie K., Cumberlidge, Neil (2004): Notes on the taxonomy of Potamonautes obesus (A Milne-Edwards, 1868) and Potamonautes calcaratus (Gordon, 1929) (Brachyura: Potamoidea: Potamonautidae) from eastern and southern Africa. Zootaxa 418 (1): 1-20, DOI: 10.11646/zootaxa.418.1.1, URL: https://biotaxa.org/Zootaxa/article/view/zootaxa.418.1.1
DOI: 10.5066/f7kk9b1r
title: Lake Erie Fish Community Data, 2013-2017

description: Assessing the distribution and abundance of both predator and prey (forage) fish species is a cornerstone of ecosystem-based based fishery management, and supports decision making that considers food-web interactions. In support of binational Great Lakes fishery management the objectives of this survey were to: provide estimates of densities of key forage and predator species in the western basin of Lake Erie, to assess seasonal and spatial distributions of fishes, and to assess year class strength. A systematic grid sampling approach with 41 stations was sampled during June (Spring) and September (Autumn), starting in 2013. This data release adds 2017 data to the set, making it five years of continuous observation.
DOI: 10.5281/zenodo.5236706
title: test_version1

description: xxx
DOI: 10.5441/001/1.3c4fv0m4/1
title: Movement ecology of the jaguar in the largest floodplain of the world the Brazilian Pantanal

description: Morato RG Thompson JJ, Paviolo A, De la Torre JA, Lima F, McBride Jr RT, De Paula RC, Cullen Jr L, Silveira L, Kantek DLZ, et al. 2018. Jaguar movement database: a GPS-based movement dataset of an apex predator in the Neotropics. Ecology. 99(7):1691. doi:10.1002/ecy.2379
description: The field of movement ecology has rapidly grown during the last decade, with important advancements in tracking devices and analytical tools that have provided unprecedented insights into where, when, and why species move across a landscape. Although there has been an increasing emphasis on making animal movement data publicly available, there has also been a conspicuous dearth in the availability of such data on large carnivores. Globally, large predators are of conservation concern. However, due to their secretive behavior and low densities, obtaining movement data on apex predators is expensive and logistically challenging. Consequently, the relatively small sample sizes typical of large carnivore movement studies may limit insights into the ecology and behavior of these elusive predators. The aim of this initiative is to make available to the conservation-scientific community a dataset of 134,690 locations of jaguars (Panthera onca) collected from 117 individuals (54 males and 63 females) tracked by GPS technology. Individual jaguars were monitored in five different range countries representing a large portion of the species’ distribution. This dataset may be used to answer a variety of ecological questions including but not limited to: improved models of connectivity from local to continental scales; the use of natural or human-modified landscapes by jaguars; movement behavior of jaguars in regions not represented in this dataset; intraspecific interactions; and predator-prey interactions. In making our dataset publicly available, we hope to motivate other research groups to do the same in the near future. Specifically, we aim to help inform a better understanding of jaguar movement ecology with applications towards effective decision making and maximizing long-term conservation efforts for this ecologically important species. There are no costs, copyright, or proprietary restrictions associated with this data set. When using this data set, please cite this article to recognize the effort involved in gathering and collating the data and the willingness of the authors to make it publicly available.
DOI: 10.5441/001/1.3c4fv0m4/2
title: Movement ecology of the jaguar in the largest floodplain of the world the Brazilian Pantanal-reference-data

description: Morato RG Thompson JJ, Paviolo A, De la Torre JA, Lima F, McBride Jr RT, De Paula RC, Cullen Jr L, Silveira L, Kantek DLZ, et al. 2018. Jaguar movement database: a GPS-based movement dataset of an apex predator in the Neotropics. Ecology. 99(7):1691. doi:10.1002/ecy.2379
description: The field of movement ecology has rapidly grown during the last decade, with important advancements in tracking devices and analytical tools that have provided unprecedented insights into where, when, and why species move across a landscape. Although there has been an increasing emphasis on making animal movement data publicly available, there has also been a conspicuous dearth in the availability of such data on large carnivores. Globally, large predators are of conservation concern. However, due to their secretive behavior and low densities, obtaining movement data on apex predators is expensive and logistically challenging. Consequently, the relatively small sample sizes typical of large carnivore movement studies may limit insights into the ecology and behavior of these elusive predators. The aim of this initiative is to make available to the conservation-scientific community a dataset of 134,690 locations of jaguars (Panthera onca) collected from 117 individuals (54 males and 63 females) tracked by GPS technology. Individual jaguars were monitored in five different range countries representing a large portion of the species’ distribution. This dataset may be used to answer a variety of ecological questions including but not limited to: improved models of connectivity from local to continental scales; the use of natural or human-modified landscapes by jaguars; movement behavior of jaguars in regions not represented in this dataset; intraspecific interactions; and predator-prey interactions. In making our dataset publicly available, we hope to motivate other research groups to do the same in the near future. Specifically, we aim to help inform a better understanding of jaguar movement ecology with applications towards effective decision making and maximizing long-term conservation efforts for this ecologically important species. There are no costs, copyright, or proprietary restrictions associated with this data set. When using this data set, please cite this article to recognize the effort involved in gathering and collating the data and the willingness of the authors to make it publicly available.
DOI: 10.5281/zenodo.5208209
title: SNICAR related forcings for CICE/Icepack 2021.01.21

description: SNICAR derived optical properties for use in the delta-Eddington radiation in CICE/Icepack.
DOI: 10.5281/zenodo.5208208
title: SNICAR related forcings for CICE/Icepack 2021.01.21

description: SNICAR derived optical properties for use in the delta-Eddington radiation in CICE/Icepack.
DOI: 10.15468/p26u38
title: The first indigenous species of the millipede genus Eurygyrus C. L. Koch, 1847 from the European mainland, with remarks on E. nicarius (Verhoeff, 1901) and E. euboeus (Verhoeff, 1901), and a key to the species of the genus (Diplopoda: Callipodida: Schizopetalidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Stoev, Pavel, Enghoff, Henrik (2004): The first indigenous species of the millipede genus Eurygyrus C. L. Koch, 1847 from the European mainland, with remarks on E. nicarius (Verhoeff, 1901) and E. euboeus (Verhoeff, 1901), and a key to the species of the genus (Diplopoda: Callipodida: Schizopetalidae). Zootaxa 419: 1-8, DOI: 10.11646/zootaxa.419.1.1
DOI: 10.5517/cc1kl5bn
title: CCDC 1447431: Experimental Crystal Structure Determination

description: Related Article: R. J. Puddephatt|2016|CSD Communication|||
description: Related Article: Shawn Robinson, Richard J. Puddephatt|2021|New J.Chem.|45|14965|doi:10.1039/D0NJ03168B
DOI: 10.5517/ccdc.csd.cc235whp
title: CCDC 1942072: Experimental Crystal Structure Determination

description: Related Article: Jian Li, Haibo Huo, Fang Yang, Qianqian Zhou, Mengxue Li, Zi-Sheng Chen, Kegong Ji|2021|Org.Chem.Front.|8|4853|doi:10.1039/D1QO00821H
DOI: 10.5517/ccdc.csd.cc235wjq
title: CCDC 1942073: Experimental Crystal Structure Determination

description: Related Article: Jian Li, Haibo Huo, Fang Yang, Qianqian Zhou, Mengxue Li, Zi-Sheng Chen, Kegong Ji|2021|Org.Chem.Front.|8|4853|doi:10.1039/D1QO00821H
DOI: 10.5517/ccdc.csd.cc23pglw
title: CCDC 1957048: Experimental Crystal Structure Determination

description: Related Article: Chuncheng Zou, Yanting Lv, Min Lu, Xin Li, Lei Zhang, Lei Yang, Zhen Liu, Yanxiong Ke, Gonghua Song, Jinxing Ye|2021|Org.Chem.Front.|8|4758|doi:10.1039/D1QO00371B
DOI: 10.5517/ccdc.csd.cc23pgmx
title: CCDC 1957049: Experimental Crystal Structure Determination

description: Related Article: Chuncheng Zou, Yanting Lv, Min Lu, Xin Li, Lei Zhang, Lei Yang, Zhen Liu, Yanxiong Ke, Gonghua Song, Jinxing Ye|2021|Org.Chem.Front.|8|4758|doi:10.1039/D1QO00371B