cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.r3v52/1
title: Genotypes for individual F2 hybrids

description: Genotypes for F2 hybrids from crosses between the San Diego (SD) and Abalone Cove (AB) populations of the copepod Tigriopus californicus. Individuals were genotyped at 14 PCR based markers across the 12 chromosomes. AB refers to the AB homozygous genotype, SD is homozygous SD and H refers to heterozygotes.
DOI: 10.5061/dryad.r3v52/2
title: Allele frequency per SNP for F2 hybrids

description: Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are in reference to the AB population. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
DOI: 10.5061/dryad.r3v52/3
title: Allele frequency for F2 hybrids after sliding window averaging of 500 SNP

description: Allele frequencies from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 500 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
DOI: 10.5061/dryad.r3v52/4
title: Allele frequency for F2 hybrids after sliding window averaging of 1000 SNP

description: Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 1000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
DOI: 10.5061/dryad.r3v52/5
title: Allele frequency for F2 hybrids after sliding window averaging of 2000 SNP

description: Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 2000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
DOI: 10.5061/dryad.t4k41/1
title: Thermography data Darwins finches

description: Surface temperatures and heat exchange calculations for each measured thermal image
DOI: 10.5061/dryad.t9n0r/2
title: Environmental parameters data

description: This file contains the results from the water chemistry analyses for each trip in each river along with water flow measurements taken on-site. The first two tabs contain the data (for water chemistry and flow, respectively) and the third tab contains the legend for the data tabs.
DOI: 10.5061/dryad.vb769/1
title: Data_SETDB2_9aug2017

description: Full description in manuscript - Handedness data: 
Participants filled out the Waterloo Handedness Questionnaire (WHQ).  Scores for each of 32 WHQ items ranging from +2 for strong right, +1 for weak right, 0 for ambidextrous, -1 for weak left and -2 for strong left, giving a total scale range from -64 to +64. Laterality Quotient (LQ) is a continuous measure from -64 to +64 that thus incorporates both direction and strength of handedness; Strength of Handedness (ST) is the absolute value of LQ; and Left-Right (LR) is a dichotomous measure whereby -1 to -64 is designated left and +1 to +64 is right. 
Genetic data: 
DNA was extracted from saliva using standard phenol-chloroform protocols. Fluorophore-labeled primers for SETDB2 rs4942830 fluorophore-labeled were used for TaqMan® genotyping on a Roche LightCycler® 96 Real-Time PCR machine. VIC and FAM fluorescence data were analyzed under Endpoint Genotyping using LightCycler® 96 software, version 1.1.0.1320.
DOI: 10.5061/dryad.vq700/1
title: Muscle Induced Acceleration during Balance Recovery

description: The data included within the compressed file include the kinematic, kinetic, muscle force and muscle induced acceleration results from simulations of each individual participant within the associated study published in PLOS ONE.
DOI: 10.5061/dryad.18bv1/2
title: R functions to filter a vcf

description: These functions can be used to filter a vcf file. They can remove loci that have a given amount missing data, remove individuals that have a given amount of missing data, remove individuals by name, and create histograms either of missing data per locus or individuals. Finally, once data are filtered, there is a function to write a structure output file.
DOI: 10.5061/dryad.18bv1/3
title: Moss data

description: These are the data used is analyses, recorded in a structure formatted file. There are 81 individuals and 1678 loci, with up to 60% missing data per locus.
DOI: 10.5061/dryad.2qr77/1
title: Ultrametric Bee Hummingbird tree

description: Ultrametric bee hummingbird phylogeny including 35 taxa of bee hummingbird,  and 6 outgroups from other hummingbird clades. See also Figure S1.
DOI: 10.5061/dryad.31s59/1
title: Alignment of dsx proteins

description: Alignment of dsx proteins
DOI: 10.5061/dryad.435h5/1
title: Data from sequential exposure experiments

description: Wild-caught house finches were individually housed and sequentially inoculated with pairs of Mycoplasma gallisepticum strains that were either identical or of differing virulence.  Measures include pathogen load, clinical signs ("Eye Score"), and ELISA S/P data for primary and secondary exposures.
DOI: 10.5061/dryad.4g1h2/1
title: HH10 PGK1:H2B-chFP Tiled Z Stack 20x.lsm. time lapse ventral view

description: time lapse of a stage HH10 PGK1:H2B-chFP embryo ventral view 20x objective on a Zeiss 780 confocal microscope and Zen 2011 black edition 64 bit software.Fig 5 and Fig 6
DOI: 10.5061/dryad.4g1h2/2
title: HH10 PGK1:H2B-chFP Tiled Z Stack 20x.lsm. time lapse dorsal view

description: time lapse Dorsal view of a  HH11PGK1:H2B-chFP embryo  using a 20x objective on a Zeiss 780 confocal microscope and Zen 2011 black edition 64 bit software.Fig 5 and Fig 6
DOI: 10.5061/dryad.4pb80/1
title: List of all protein IDs and Homology Groups

description: List of protein IDs (combined Ensembl/NCBI) for a range of vertebrate species, and their assignment to Homology Groups
DOI: 10.5061/dryad.5q5q6/1
title: Trait data
DOI: 10.5061/dryad.5q5q6/2
title: Phylogeny
DOI: 10.5061/dryad.6t1f5/1
title: RawData_mgf.tar

description: Raw data with mass spectrometry (MS/MS) spectra information for the iTRAQ analysis of soybean cell wall proteins.
DOI: 10.5061/dryad.6t1f5/2
title: Supllemental figure S1 to S4

description: Supllemental figure S1 to S4
DOI: 10.5061/dryad.6t1f5/3
title: Supplementary Table S1

description: Supplementary Table S1
DOI: 10.5061/dryad.6t1f5/4
title: Supplementary Table S2

description: Supplementary Table S2
DOI: 10.5061/dryad.6t1f5/5
title: Supplementary Table S3

description: Supplementary Table S3
DOI: 10.5061/dryad.70pt4/1
title: Dispersal simulation code

description: Matlab code that was used in our paper to simulate numbers of seeds landing in quadrats along a transect based on empirical pdfs with randomly varying parameters.
DOI: 10.5061/dryad.8153g/37
title: MrBayes_mtDNAdataset2_tapirOut_allPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/39
title: MrBayes_mtDNAdataset2_tapirOut_reducedPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/40
title: MrBayes_mtDNAdataset2_tapirOut_reducedPartns_inclHippidion.con
DOI: 10.5061/dryad.8153g/41
title: MrBayes_mtDNAdataset3_dogOut_allPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/42
title: MrBayes_mtDNAdataset3_dogOut_allPartns_inclHippidion.con
DOI: 10.5061/dryad.8153g/43
title: MrBayes_mtDNAdataset3_dogOut_reducedPartns_exclHippidion.con
DOI: 10.5061/dryad.8153g/44
title: MrBayes_mtDNAdataset3_dogOut_reducedPartns_inclHippidion.con
DOI: 10.5061/dryad.8153g/45
title: RAxML_mtDNAdataset1_rhinoOut_allPartns_exclHippidion
DOI: 10.5061/dryad.8d211/1
title: data Janssens & Stoks F.E.

description: original dataset with different response variables (life history and physiology) covered in the article published in Functional Ecology.
DOI: 10.5061/dryad.9507b/1
title: Offspring Size and Condition Measures
DOI: 10.5061/dryad.9507b/2
title: Heritability Analysis

description: Excel file with proportion of chirps led by fathers and sons
DOI: 10.5061/dryad.9n153/1
title: Phylogenetic analysis Supplementary Data Set

description: This file includes the complete results of the phylogenetic analysis including the character matrix, ACCTRAN and DELTRAN optimizations and the scripts used in each analysis.
DOI: 10.5061/dryad.b5335/1
title: Simulation results supporting figures for the paper

description: This file provides the summary of all simulation results used in the paper. All results were created using ALMaSS using the input data specified in the papers supplementary information.
DOI: 10.5061/dryad.bh41r/1
title: data pairwise competition and species traits

description: The file contains four files: 1) species.list_traits, which include all the species used in the study and the functional traits we had information from, 2) matrices_continuous, which are the pairwise species x species competition matrices filled with the relative yields for each species in each pairwise combination, 3) matrices_binomial, which is equivalent to file 2, but the relative yields has been transformed into 0s and 1s, and 4) triplets, which include the data for each 3-species combination, whether or not the combination is intransitive (Intrans = 1 = intransitive triplet, 0 if hierarchical), and the average and variance of the functional traits and competitive rank of each species combination
DOI: 10.5061/dryad.bk0rd/1
title: Granby_RNotebook

description: R project for SECR analysis, all scripts and data within project
DOI: 10.5061/dryad.br42r/1
title: FINAL CODE

description: This file contains data collected from interviews with physicians , pharmacists and pharmaceutical representatives.Each participant was given a code representing the profession and an assigned number. Data are presented by themes and quotes from interviews
DOI: 10.5061/dryad.db1h7/1
title: General Psychiatry data
DOI: 10.5061/dryad.db1h7/2
title: IHTT data
DOI: 10.5061/dryad.f71vq/5
title: Recruitment Rate from Seeds

description: DBN CPT (visualised in supporting information S7)
DOI: 10.5061/dryad.f71vq/6
title: Seed Density

description: DBN CPT (visualised in supporting information S7)
DOI: 10.5061/dryad.fg0ft/1
title: Pleural effusion biomarkers and CT findings in diagnosing malignant pleural mesothelioma

description: Pleural effusion biomarkers and CT findings in diagnosing malignant pleural mesothelioma
DOI: 10.5061/dryad.h66cn/1
title: Capture and Mortality Metrics of Mule Deer in SE Wyoming

description: This data was collected from 2010-2014 of helicopter captured mule deer near Douglas, Wyoming, USA. The information is coded and look-up tables are provided on additional worksheets contained in the Excel file that explain what each code represents. Mule deer were GPS radio-collared and followed for the duration of the study. Marked deer were recaptured annually to test for CWD and pregnancy.
DOI: 10.5061/dryad.k86k2/1
title: Habitat of Typhonium muaklekense sp. nov.

description: Typhonium muaklekense sp. nov. was collected from the Muak Lek district, Saraburi province, Thailand. Morphologically, the spathe of this species resembles T. roxburghii Schott and T. varians Hett. & Sookch., but the leaves are distinctly different by orbicular leaf blades. Critical observation and analysis of the specimens indicated that they represent a previously unrecognized species that we are naming T. muaklekense based on its occurrence in the Muak Lek district, Saraburi province, Thailand. Typhonium muaklekense D. Sookchaloem & S. Maneeanakekul is described and illustrated. The new species resembles T. roxburghii Schott and T. varians Hett. & Sookch. in the spathe. Drawings, photographs and a table comparing diagnostic features of T. muaklekense, T. roxburghii and T. varians are provided.
DOI: 10.5061/dryad.k9q7h/1
title: 40 mg/kg DEX injection-sEPSC Ctrl.12 Inj.19

description: This excel includes all original data related to sEPSC recorded on GABAergic neurons from 40 mg/kg DEX injection and saline injection mice.
DOI: 10.5061/dryad.k9q7h/2
title: 40 mg/kg DEX injection-sIPSC Ctrl.13 Inj.11

description: This excel includes all available original data related to sIPSC recorded on glutamatergic neurons in in the mouse amygdala, in which the mice were treated by the intraperitoneal injections of dexamethasone (DEX,40 mg/kg) once a day  or for one week.There are 13 cells in control group and 11 cells in the DEX injection group.
DOI: 10.5061/dryad.k9q7h/3
title: ISI(40 mg/kg DEX injection-GABAergic neurons) Ctrl.11 Inj.11

description: This excel includes all available original data related to the intervals of spikes(ISI) recorded on GABAergic neurons in DEX injection mice(n=11 cells) and  in saline injection mice(n=11 cells)
DOI: 10.5061/dryad.k9q7h/4
title: ISI(40 mg/kg DEX injection-Gluergic neurons) Ctrl.19 Inj.28

description: This excel includes original data related to the inter-spike intervals(ISI) recorded on Gluergic neurons in DEX injection (n=28 cells) and saline injection(n=19 cells).
DOI: 10.5061/dryad.k9q7h/5
title: 25 uM DEX washing-on sEPSC n=14cells

description: This excel includes original data related to the inter-spike intervals(ISI) recorded on GABAergic neurons(n=14) before and after DEX washing on.
DOI: 10.5061/dryad.k9q7h/6
title: 25 uM DEX washing-on IPSC  n=10cells

description: This excel includes original data related to the inter-spike intervals(ISI) recorded on Gluergic neurons(n=10) before and after DEX washing on.
DOI: 10.5061/dryad.k9q7h/7
title: ISI(25 uM DEX washing-on-GABAergic neurons）13Cells

description: This excel includes original data related to the inter-spike intervals(ISI) recorded on GABAergic neurons(n=13) before and after DEX washing on.
DOI: 10.5061/dryad.p2f4b/1
title: FGM and environmental data, red deer

description: Full database of fecal glucucocorticoid metabolites (FGM) concentration in pellets of red deer (Cervus elaphus) collected in 6 areas in Poland along with environmental data (see text for details on sources of data).
DOI: 10.5061/dryad.p2f4b/2
title: FGM and environmental data, roe deer

description: Full database of fecal glucucocorticoid metabolites (FGM) concentration in pellets of roe deer (Capreolus capreolus) collected in 6 areas in Poland along with environmental data (see text for details on sources of data).
DOI: 10.5061/dryad.p5h31/1
title: genetic variance information and species flight initiation distance

description: genetic variance information: Microsatellite (Ho, inbreeding coefficient) and minisatellite (bandsharing coefficient) information for each species with flight initiation distance (FID) information as well as their phylogenetic tree
DOI: 10.5061/dryad.pj557/1
title: VariationInECs

description: Raw gas chromatograph measures of amounts of 20 epicuticular compounds of individual Megabruchidius beetles, with information on the species, sex, age and mating status of each individual
DOI: 10.5061/dryad.pj557/2
title: ChoiceTrials

description: Raw gas chromatograph measures of amounts of 20 epicuticular compounds extracted from Megabruchidius beetles either 'chosen' or 'rejected' in 2-way mate choice trials
DOI: 10.5061/dryad.pj557/3
title: NoChoiceTrials

description: Raw gas chromatograph measures of amounts of 20 epicuticular compounds from individual Megabruchidius beetles used in 'no-choice' mating trials, including information on the latency to mate for each individual
DOI: 10.5061/dryad.qk7g8/1
title: Supporting data: morphology, kinematic and deflection
DOI: 10.5061/dryad.qq06v/1
title: Palmyra Carcharhinus melanopterus

description: Hourly telemetry data, through 2015
DOI: 10.5061/dryad.qq06v/2
title: Palmyra Carcharhinus amblyrhynchos

description: Hourly telemetry data, through 2015
DOI: 10.5061/dryad.r3v52/6
title: Allele frequency for F2 hybrids after sliding window averaging of 3000 SNP

description: Allele frequencies per SNP from Pool-seq data of F2 hybrids between the San Diego (SD) and Abalone cove (AB) populations of the copepod Tigriopus californicus. Allele frequencies are the average allele frequency of 3000 consecutive SNP. Allele frequencies are in reference to the AB population. Position is the SNP position for the last SNP in the averaged window. Nauplii_AF refers to the allele frequency for the nauplii dataset; Adult_AF refers to the allele frequency for the adults dataset.
DOI: 10.5061/dryad.r5m76/1
title: Particle Clearance R Script 24072017
DOI: 10.5061/dryad.r5m76/2
title: Particle Clearance Spreadsheet 24072017
DOI: 10.5061/dryad.r5m76/3
title: Particle Size Selectivity R Script 28062017
DOI: 10.5061/dryad.r5m76/4
title: Particle Size Selectivity Spreadsheet 28062017
DOI: 10.5061/dryad.r7v3s/1
title: Kotrschal et al. Evolution Brainregionsizes
DOI: 10.5061/dryad.rj6gq/1
title: dataset-JZ Cross evolution to medical triazole in A. fumigatus

description: Data of fitness measurements.
DOI: 10.5061/dryad.s5p44/1
title: C fix and N fix
DOI: 10.5061/dryad.v0s27/11
title: README file
DOI: 10.5061/dryad.v0s27/12
title: Supplementary Materials File 1

description: Teleostei species-level tree from Open Tree. Tree description file (Newick) from Open Tree synthesis used as the input into Mesquite.
DOI: 10.5061/dryad.v0s27/13
title: Supplementary Materials File 2

description: Output files of synthesis tree build from Open Tree. Archive files of the output directory for each step in the synthesis tree build.
DOI: 10.5061/dryad.v0s27/14
title: Supplementary Materials File 3

description: Merged tree matrix. NEXUS-formatted translation of the final output matrix (Supplementary Materials Matrix 4) merged with the Teleostei species-level tree from Open Tree (Supplementary Materials File 1). This combined matrix and tree file was used for ancestral state reconstruction in Mesquite.
DOI: 10.5061/dryad.v0s27/15
title: Supplementary Materials File 4

description: Anguilliformes species-level trees based on subset from Teleostei species-level tree from Open Tree (Supplementary Materials File 1) merged with the final output matrix (Supplementary Materials Matrix 4). File includes 1,000 trees each with randomly resolved polytomies performed using the APE package in R.
DOI: 10.5061/dryad.v0s27/16
title: Supplementary Materials Matrix 1

description: OntoTrace generated NeXML synthetic morphological supermatrix for pectoral fin and pelvic fin presence and absence, including metadata for supporting states and publication information.
DOI: 10.5061/dryad.v0s27/17
title: Supplementary Materials Matrix 2

description: The tab-delimited character matrix generated after pre-processing the OntoTrace matrix (Supplementary Materials Matrix 1) by converting from NeXML format.
DOI: 10.5061/dryad.vj78t/1
title: Net room and cone assays (Fig. 1)

description: Data used to generate figure 1
DOI: 10.5061/dryad.vj78t/2
title: Feeding inhibition assays (Fig. 2)

description: Data used to generate figure 2.
DOI: 10.5061/dryad.vj78t/3
title: Host-seeking assays (Fig. 3-5)

description: Data used to generate figures 3-5, which differ by mosquito species.
DOI: 10.5061/dryad.vj78t/4
title: Expt Hut data (Fig. 6)

description: Data collected from experimental huts in Cote d'Ivoire and used to generate figure 6.
DOI: 10.5061/dryad.09j54/1
title: Midstorey flock matrices

description: The file contains the plot wise recording of midstorey flocks. The rows are the flock ID and the columns are the species. The cell entries are the conspecific group sizes in mixed-flocks.
DOI: 10.5061/dryad.09j54/2
title: Understorey flock matrices

description: The file contains the plot wise recording of understorey flocks. The rows are the flock ID and the colums are the species. The cell entries are the conspecific group size in mixed-species flocks.
DOI: 10.5061/dryad.1cg39/1
title: PopulationSamplingData

description: This file contains the data from the population sampling containing the counts of the different categories(females with eggs, females with ephippium, males, etc) for every sampling event and pond. The dataset also contains density information as well as growth rates, birth rates and death rates (calculated for a 3-day interval).
DOI: 10.5061/dryad.1cg39/2
title: Data for clutchsize and sex ratio

description: This data contains the information of the females carrying asexual eggs from each pond and information on the asexual clutch size as well as the sex of the offspring. Each sample number contains up to 10 entries for individual females from the same sampling event and pond. Additionally, we recorded whether the females next clutch contained an ephippium.
DOI: 10.5061/dryad.1cg39/3
title: Data for Cost of sex lab experiment

description: This is the data for the analysis of the lab experiment in the Reproductive life-history trade-offs. The data contains the ID, the treatment (light or dark) the birth and death date (where the death date is censored), C1, C2, C3 etc is the date of the first, second, third etc. clutch and the number of males and females or ephippia in the respective clutch.
DOI: 10.5061/dryad.1h3k8/1
title: Experiment 1 Plant growth and nodule data

description: Plant growth and nodule data from an experiment in which wildtype and non-nodulating mutant soybean plants were inoculated with soils collected from long-term agronomic treatments at the Kellogg Biological Station LTER site.
DOI: 10.5061/dryad.1kc2c/1
title: Figure 1-Steinberg et al

description: Figure 1 - Source data.
DOI: 10.5061/dryad.1kc2c/2
title: Figure 2-Steinberg et al

description: Figue 2 - Source data
DOI: 10.5061/dryad.1kc2c/3
title: Figure 3-Steinberg et al

description: Figure 3 - Source data
DOI: 10.5061/dryad.1kc2c/4
title: Figure 4-Steinberg et al

description: Figure 4 - Source data
DOI: 10.5061/dryad.1kc2c/5
title: MATLAB CODE

description: Matlab code used to readout the SPAD array.
DOI: 10.5061/dryad.1m12h/1
title: Pelican migration routes

description: Locations and dates of Brown Pelican (Pelecanus occidentalis) migrations through the Tehuantepec Isthmus determined from bird-borne GPS tracking.
DOI: 10.5061/dryad.1m12h/2
title: Egret migration routes

description: Locations and dates of Reddish egret (Egretta rufescens) migration through the Tehuantepec Isthmus determined from bird-borne GPS loggers.
DOI: 10.5061/dryad.2j0h3/1
title: single_samples_occ_pre

description: Pre-purification detection data from triplicate wells under the single samples scenario.
DOI: 10.5061/dryad.2j0h3/2
title: single_samples_occ_post

description: Post-purification detection data from triplicate wells under the single samples scenario.
DOI: 10.5061/dryad.2j0h3/3
title: multi_samples_occ_pre

description: Pre-purification detection data from triplicate wells under the multiple samples scenario.
DOI: 10.5061/dryad.31s59/2
title: Dsx maximum likelihood phylogeny

description: Dsx maximum likelihood phylogeny
DOI: 10.5061/dryad.31s59/3
title: Sxl protein alignment

description: Sxl protein alignment
DOI: 10.5061/dryad.31s59/4
title: Sxl_AlignBlosum45_consensusTree

description: Sxl maximum likelihood phylogeny
DOI: 10.5061/dryad.3qq21/1
title: plants.hummingbirds OIK-04344 - Dryad

description: List of plant and hummingbird species of the Serra do Mar State Park (southeastern Brazil) observed interacting according to the literature, and the estimates of evolutionary isolation for each species based on Rao's quadratic entropy, fair proportion, and equal splits.
DOI: 10.5061/dryad.5781r/1
title: Ruuskanen_FE2017_data

description: Data for Ruuskanen et al. FE 2017
DOI: 10.5061/dryad.5gn34/1
title: Table1

description: Data for Table 1
DOI: 10.5061/dryad.5gn34/2
title: Table2

description: Data for table 2