cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gz536g
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia dumetorum",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011798-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30197476
title: Effects of triptolide herb on the progression of Alzheimer’s disease preclinical models: a systematic review

description: This study aims to systematically evaluate and synthesize preclinical evidence on the neuroprotective effects of Triptolide (Tri) in Alzheimer’s disease (AD) models, focusing on its impact on amyloid-beta accumulation, synaptic dysfunction, neuroinflammation, oxidative stress, autophagy, and apoptosis. AD is the most common cause of dementia, yet current treatments largely target symptoms rather than underlying pathology. Tri, a bioactive compound from <i>Tripterygium wilfordii</i>, has shown promise due to its anti-inflammatory, antioxidant, and neuroprotective properties. A systematic search of PubMed, Embase, and Web of Science was conducted up to 16 March 2024. English-language in vivo and in vitro studies on Tri’s effects in AD models were included. Methodological quality was assessed using SYRCLE and SciRAP tools. The review is registered in PROSPERO (CRD42024521822). Out of 403 studies, 15 met the inclusion criteria (6 in vivo, 8 in vitro, 1 both). Tri reduced Aβ burden, enhanced memory and synaptic integrity, suppressed neuroinflammation and oxidative stress, and modulated autophagy and apoptosis. Tri demonstrates significant multi-target neuroprotective effects in AD preclinical models. Further high-quality studies are warranted to optimize dosing, delivery, and safety for clinical translation.
DOI: 10.6084/m9.figshare.30197476.v1
title: Effects of triptolide herb on the progression of Alzheimer’s disease preclinical models: a systematic review

description: This study aims to systematically evaluate and synthesize preclinical evidence on the neuroprotective effects of Triptolide (Tri) in Alzheimer’s disease (AD) models, focusing on its impact on amyloid-beta accumulation, synaptic dysfunction, neuroinflammation, oxidative stress, autophagy, and apoptosis. AD is the most common cause of dementia, yet current treatments largely target symptoms rather than underlying pathology. Tri, a bioactive compound from <i>Tripterygium wilfordii</i>, has shown promise due to its anti-inflammatory, antioxidant, and neuroprotective properties. A systematic search of PubMed, Embase, and Web of Science was conducted up to 16 March 2024. English-language in vivo and in vitro studies on Tri’s effects in AD models were included. Methodological quality was assessed using SYRCLE and SciRAP tools. The review is registered in PROSPERO (CRD42024521822). Out of 403 studies, 15 met the inclusion criteria (6 in vivo, 8 in vitro, 1 both). Tri reduced Aβ burden, enhanced memory and synaptic integrity, suppressed neuroinflammation and oxidative stress, and modulated autophagy and apoptosis. Tri demonstrates significant multi-target neuroprotective effects in AD preclinical models. Further high-quality studies are warranted to optimize dosing, delivery, and safety for clinical translation.
DOI: 10.15468/wdtc8k
title: Bacterial communities in agricultural soils under contrasting agronomic managements and biomes of Argentina

description: The aim of this study was to compare soil bacterial communities in agricultural lands attempted to soybean production in different regions of Argentina. Intensive and conservative management practices were evaluated in contemporary long-term field experiments carried out in three different locations of the rolling pampas region.
DOI: 10.15468/aemayn
title: Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads

description: To investigate the functional potentials of microbial community
DOI: 10.15468/dl.7q8sf8
title: Occurrence Download

description: A dataset containing 9460 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Althaea cannabina)"
 ]
}

 The dataset includes 9460 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011797-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndwtp6
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lithobates catesbeianus",
 "Year 2019-2025"
 ]
}

 The dataset includes 105 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011802-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czm68r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia dumetorum",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011800-250920141307145/datasets/export for details.
DOI: 10.15468/dl.jhkdnb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia dumetorum",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011803-250920141307145/datasets/export for details.
DOI: 10.82253/wnvy-5565
title: Differing effects of fertiliser use on nitrous oxide emissions from grassland sites in Ireland
DOI: 10.15468/dl.s2nvvk
title: Occurrence Download

description: A dataset containing 25400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1935"
 ]
}

 The dataset includes 25400 records from 113 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011792-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17191889
title: Dataset of Eadro: Traces, Metrics, and Logs for Anomaly Detection and Root Cause Localization in Microservices

description: The original Eadro dataset was relatively disorganized; these are the cleaned SN and TT datasets.

You can verify the integrity of the files using the following command in terminal:md5sum -c checksums.md5
DOI: 10.5281/zenodo.17191890
title: Dataset of Eadro: Traces, Metrics, and Logs for Anomaly Detection and Root Cause Localization in Microservices

description: The original Eadro dataset was relatively disorganized; these are the cleaned SN and TT datasets.

You can verify the integrity of the files using the following command in terminal:md5sum -c checksums.md5
DOI: 10.15468/dl.yvd3kr
title: Occurrence Download

description: A dataset containing 261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "OccurrenceStatus is Present",
 "TaxonKey is Dreissena rostriformis bugensis"
 ]
}

 The dataset includes 261 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011804-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dym8wh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia hybrida",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011808-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3az376
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia hybrida",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011806-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zahysp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia hybrida",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011807-250920141307145/datasets/export for details.
DOI: 10.5281/zenodo.14018010
title: Figure source data for "Photoengineering the Magnon Spectrum in Insulating Antiferromagnet"

description: Figure 1:(b) 1b.txt — Time-resolved Faraday rotation traces(c) 1c.txt — Fourier spectra of time-resolved traces(d) 1d_absorption.txt — Optical absorption spectrum(d) 1d_bandwidth.txt — Spectral bandwidth vs photon energy(d) 1d_inset.txt — Time-resolved traces across CT-bandgap

Figure 2:(a) 2a.txt — Time-resolved Faraday rotation at different fluences(b) 2b_Fourier.txt — FFT spectra of traces(b) 2b_inset.txt — Bandwidth and peak frequency vs fluence

Figure 3:(a) 3a.txt — Time-resolved Kerr rotation at finite k(b) 3b.txt — Fourier spectra of k ≈ 0 and k = k0 modes

Figure 4:(d) 4d_finitek_exp.txt — Experimental oscillation amplitudes vs fluence (finite k)(d) 4d_finitek_theory.txt — Theoretical amplitudes vs quench strength (finite k)(d) 4d_k=0_exp.txt — Experimental oscillation amplitudes vs fluence (k ≈ 0)(d) 4d_k=0_theory.txt — Theoretical amplitudes vs quench strength (k ≈ 0)

Extended Data Fig. 2:(a) E2a.txt — Time-traces, off-resonant regime(a) E2a_inset.txt — Amplitude vs pump polarization angle(b) E2b.txt — Time-traces, CT-regime(b) E2b_inset.txt — Amplitude vs pump polarization angle

Extended Data Fig. 3:(a) E3a.txt — Fourier spectra at different temperatures(b) E3b.txt — Frequencies vs temperature

Extended Data Fig. 4:(a) E4_traces.txt — Time-traces for different pump photon energies(b) E4_inset.txt — Distortion duration τ and penetration depth δ

Extended Data Fig. 5:(a) E5a.txt — Time-traces of k = k0 mode at different fluences(b) E5b.txt — Decay rate γk vs fluence

Extended Data Fig. 6:(a) E6.txt — Transient reflectivity traces(a) E6_amplitude.txt — Fluence dependence of τ1 amplitude
DOI: 10.5284/1106789
title: Images from Historic Building Recording Work at Pond Farm, Mepal, Cambridgeshire, January to April 2019

description: This collection comprises images from a Level 3 historic building inspection and recording at Pond Farm, Mepal, Cambridgeshire. This work was undertaken by Archaeological Building Recording Services between January and April 2019. The images include exterior and interior shots at Pond Farm taken during the building recording and include detail shots of historic features such as wattle and duab and possible apotropaic markings.
DOI: 10.15468/dl.gewzpp
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Senna cobanensis"
 ]
}

 The dataset includes 171 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011809-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26188/28722788.v9
title: ChloroScan Supplementary files

description: <b>This article contains:</b>ChloroScan outputs for 4 real metagenomes and 2 benchmarking metagenomes;Marker gene database: orthofinder results, custom scripts and the files required during creating it. The detailed codes used in completing this can be found at: https://github.com/Andyargueasae/ChloroScan_reproducibility.Orthofisher results of rbcL genes from six SAMEA2189670 bins: used to identify taxa of these bins via blastp against nonredundant protein database.<br>
DOI: 10.15468/dl.ycubvn
title: Occurrence Download

description: A dataset containing 282489 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus minor",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 282489 records from 2321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011763-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0173872.10fu
title: SH0173872.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173873.10fu
title: SH0173873.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0173874.10fu
title: SH0173874.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.zkc4ep
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "GadmGid is one of (ECU.15.1.1_1, COL.1_2, PER.1_1, GUF, GUY, SUR, VEN.1_1, BRA.3_1, BRA.23_1, BRA.4_1, BRA.14_1)",
 "OccurrenceStatus is Present",
 "TaxonKey is Qualea acuminata Spruce ex Warm."
 ]
}

 The dataset includes 123 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051917-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a5fb2q
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Epinephelus rivulatus (Valenciennes, 1830)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051915-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmr53y
title: Occurrence Download

description: A dataset containing 131159 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Evaluación de la dinámica pesquera en la cuenca media y baja del río Cauca, en el marco del Proyecto Hidroeléctrico Ituango durante los años 2016 – 2020"
 ]
}

 The dataset includes 131159 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051873-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11237306
title: Worldwide distribution of Telonemia in freshwaters

description: Worldwide distribution of Telonemia in freshwaters

 

The following files are available

 

final_telonema_sequences_400bp_v3.fasta.gz : All Telonemia 18S rRNA gene sequences used in this workmafft-alignments-trees.tar.gz  : mafft alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logspasta-alignments-trees.tar.gz  : pasta alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logs

Tree views are also availabe at iToL

https://itol.embl.de/shared/rohitghai
DOI: 10.5281/zenodo.13236860
title: Global freshwater distribution of Telonemia protists in freshwaters

description: Global freshwater distribution of Telonemia protists in freshwaters

 

The following files are available

 

final_telonema_sequences_400bp_v3.fasta.gz : All Telonemia 18S rRNA gene sequences used in this workmafft-alignments-trees.tar.gz  : mafft alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logspasta-alignments-trees.tar.gz  : pasta alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logs

Supplementary Tables

Supplementary Table S1.xlsx : Telonemia CARD-FISH Counts and Physiochemical parametersSupplementary Table S2.xlsx : Details of metagenomic assemblies usedSupplementary Table S3.xlsx : Details of all Telonemia 18S rRNA sequences  Supplementary Table S4.xlsx : CARD-FISH and 18S rRNA gene abundance comparisonsSupplementary Table S5.xlsx : Correlation analyses of Telonemia CARD-FISH abundances with environmental parameters

 

Tree views are also availabe at iToL

https://itol.embl.de/shared/rohitghai
DOI: 10.5281/zenodo.11237305
title: Global freshwater distribution of Telonemia protists in freshwaters

description: Global freshwater distribution of Telonemia protists in freshwaters

 

The following files are available

 

final_telonema_sequences_400bp_v3.fasta.gz : All Telonemia 18S rRNA gene sequences used in this workmafft-alignments-trees.tar.gz  : mafft alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logspasta-alignments-trees.tar.gz  : pasta alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logs

Supplementary Tables

Supplementary Table S1.xlsx : Telonemia CARD-FISH Counts and Physiochemical parametersSupplementary Table S2.xlsx : Details of metagenomic assemblies usedSupplementary Table S3.xlsx : Details of all Telonemia 18S rRNA sequences  Supplementary Table S4.xlsx : CARD-FISH and 18S rRNA gene abundance comparisonsSupplementary Table S5.xlsx : Correlation analyses of Telonemia CARD-FISH abundances with environmental parameters

 

Tree views are also availabe at iToL

https://itol.embl.de/shared/rohitghai
DOI: 10.5281/zenodo.11372280
title: Worldwide distribution of Telonemia in freshwaters

description: Worldwide distribution of Telonemia in freshwaters

The following files are available

final_telonema_sequences_400bp_v3.fasta.gz : All Telonemia 18S rRNA gene sequences used in this workmafft-alignments-trees.tar.gz  : mafft alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logspasta-alignments-trees.tar.gz  : pasta alignments of 18S sequences at 95,96,97,98,99,100% nucleotide identity, maximum-likelihood trees using iqtree and iqtree logs

Supplementary Tables

Supplementary Table S1.xlsx : Telonemia CARD-FISH Counts and Physiochemical parametersSupplementary Table S2.xlsx : Details of metagenomic assemblies usedSupplementary Table S3.xlsx : Details of all Telonemia 18S rRNA sequences  Supplementary Table S4.xlsx : CARD-FISH and 18S rRNA gene abundance comparisons

 

Tree views are also availabe at iToL

https://itol.embl.de/shared/rohitghai
DOI: 10.6084/m9.figshare.26503603
title: Table S11: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S11.
DOI: 10.6084/m9.figshare.26503603.v1
title: Table S11: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S11.
DOI: 10.6084/m9.figshare.26503606
title: Table S8: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S8.
DOI: 10.6084/m9.figshare.26503606.v1
title: Table S8: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S8.
DOI: 10.6084/m9.figshare.26503609
title: Table S4: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S4.
DOI: 10.6084/m9.figshare.26503609.v1
title: Table S4: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S4.
DOI: 10.6084/m9.figshare.26503612
title: Table S7: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S7.
DOI: 10.6084/m9.figshare.26503612.v1
title: Table S7: Two syenitic phases in the Early Paleogene Silhouette Island volcano–plutonic complex, Seychelles

description: Table S7.