cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5923705.v4
title: MicroRNA Signatures for circulating CD133-positive cells in hepatocellular carcinoma with HCV infection

description: <b></b> Molecular characterization of the CD133+ stem cells associated with hepatocarinogensis through identifying the expression patterns of specific microRNAs (miRNAs).<b></b>
DOI: 10.6084/m9.figshare.5923684
title: Figura 1. Aproximación de referencias intertextuales en Stranger Things

description: Esta tabla recoge uno de los apartados referentes al artículo de Vizcaíno, Guzmán y Contreras (2018), con las intertextualidades que aparecen en la temporada 1 y 2 de serie Stranger Things.
DOI: 10.6084/m9.figshare.5923684.v1
title: Figura 1. Aproximación de referencias intertextuales en Stranger Things

description: Esta tabla recoge uno de los apartados referentes al artículo de Vizcaíno, Guzmán y Contreras (2018), con las intertextualidades que aparecen en la temporada 1 y 2 de serie Stranger Things.
DOI: 10.6084/m9.figshare.5923681
title: How might sediment size heterogeneity inhibit river incision?

description: This is a talk presented on November 4th, 2015 at the Geological Society of America annual meeting in Baltimore, MD, USA. It describes field evidence, theory, and a 1-D numerical model for the influence of large blocks of rock on river erosion. This model was eventually published in Shobe et al (2016, <i>Geophysical Research Letters</i>).<br>The presentation includes two model simulation videos, which are also individually included in this repository. The PDF version of the talk has still images in place of the videos. The video "sped_up_control.mp4" accompanies slide 10 and "sped_up_blocks_20s.mp4" accompanies slide 11.<br>Abstract:<br>Rapidly eroding rivers influence adjacent hillslopes by setting their lower boundary conditions, while hillslopes and canyon walls affect rivers by supplying sediment of varying size and lithology. Much progress has been made in identifying the influence of sediment mass flux on river incision, and specifically in identifying the prevalence of erosion-inhibiting bed armor at high sediment supplies. Sediment supplied to rapidly eroding rivers is often very heterogeneous in size, and we argue that significant bed armoring by the largest grains may occur even if sediment mass flux does not exceed a river's carrying capacity. This leads to cases where rivers that quickly cut steep-walled canyons incite a negative feedback on incision by receiving an increased supply of large, immobile sediment from the canyon walls that shields significant portions of the bed from erosion. We use a simple analytical model to demonstrate that this effect is controlled by the sediment size distribution supplied from the hillslopes, the input rate of new large grains, and the rate at which large grains degrade. In model cases where the channel is decoupled from the hillslopes (i.e., increased incision does not increase the supply of large grains), the pace of river incision remains consistent through time. In cases where rapid river incision leads to an increased influx of large grains from the hillslopes (reflecting the hypothesis that steeper slopes will be more prone to releasing large grains), erosion slows as the fraction of the bed shielded by immobile grains increases. This result suggests an inherent negative feedback on incision in channels with access to a supply of large grains. Preliminary results from field surveys in the canyons of the Wind River and Beartooth ranges suggest that the residence time of large boulders and blocks in a single channel reach is long enough to cause significant long-term bed armoring. Our results show that changes in sediment size distribution may exert significant control over rates of river and landscape evolution. The critical governing timescales of this effect are the input rate of large, immobile grains from the hillslopes and the degradation rate of large grains in the channel, both of which warrant further investigation.<br>
DOI: 10.6084/m9.figshare.5923681.v1
title: How might sediment size heterogeneity inhibit river incision?

description: This is a talk presented on November 4th, 2015 at the Geological Society of America annual meeting in Baltimore, MD, USA. It describes field evidence, theory, and a 1-D numerical model for the influence of large blocks of rock on river erosion. This model was eventually published in Shobe et al (2016, <i>Geophysical Research Letters</i>).<br>The presentation includes two model simulation videos, which are also individually included in this repository. The PDF version of the talk has still images in place of the videos. The video "sped_up_control.mp4" accompanies slide 10 and "sped_up_blocks_20s.mp4" accompanies slide 11.<br>Abstract:<br>Rapidly eroding rivers influence adjacent hillslopes by setting their lower boundary conditions, while hillslopes and canyon walls affect rivers by supplying sediment of varying size and lithology. Much progress has been made in identifying the influence of sediment mass flux on river incision, and specifically in identifying the prevalence of erosion-inhibiting bed armor at high sediment supplies. Sediment supplied to rapidly eroding rivers is often very heterogeneous in size, and we argue that significant bed armoring by the largest grains may occur even if sediment mass flux does not exceed a river's carrying capacity. This leads to cases where rivers that quickly cut steep-walled canyons incite a negative feedback on incision by receiving an increased supply of large, immobile sediment from the canyon walls that shields significant portions of the bed from erosion. We use a simple analytical model to demonstrate that this effect is controlled by the sediment size distribution supplied from the hillslopes, the input rate of new large grains, and the rate at which large grains degrade. In model cases where the channel is decoupled from the hillslopes (i.e., increased incision does not increase the supply of large grains), the pace of river incision remains consistent through time. In cases where rapid river incision leads to an increased influx of large grains from the hillslopes (reflecting the hypothesis that steeper slopes will be more prone to releasing large grains), erosion slows as the fraction of the bed shielded by immobile grains increases. This result suggests an inherent negative feedback on incision in channels with access to a supply of large grains. Preliminary results from field surveys in the canyons of the Wind River and Beartooth ranges suggest that the residence time of large boulders and blocks in a single channel reach is long enough to cause significant long-term bed armoring. Our results show that changes in sediment size distribution may exert significant control over rates of river and landscape evolution. The critical governing timescales of this effect are the input rate of large, immobile grains from the hillslopes and the degradation rate of large grains in the channel, both of which warrant further investigation.<br>
DOI: 10.6084/m9.figshare.5923660
title: Analyzing the local epidemiological profile of malaria transmission in the Brazilian Amazon between 2010 and 2015.xlsx

description: Malaria cases from 2010 to 2015 were obtained from the Epidemiological Surveillance Information System (SIVEP-Malaria). We calculated the Annual Parasite Incidence (API) (confirmed number of positive slides for parasite over 1 year for population under surveillance x 1000) and the monthly incidence in each of the 310 municipalities. Population data were obtained from the 2010 National census, and IBGE estimates were used for the years 2011 to 2015.
DOI: 10.6084/m9.figshare.5923660.v2
title: Analyzing the local epidemiological profile of malaria transmission in the Brazilian Amazon between 2010 and 2015.xlsx

description: Malaria cases from 2010 to 2015 were obtained from the Epidemiological Surveillance Information System (SIVEP-Malaria). We calculated the Annual Parasite Incidence (API) (confirmed number of positive slides for parasite over 1 year for population under surveillance x 1000) and the monthly incidence in each of the 310 municipalities. Population data were obtained from the 2010 National census, and IBGE estimates were used for the years 2011 to 2015.
DOI: 10.6084/m9.figshare.5923660.v1
title: Database Plos One Outbreaks.xlsx

description: Malaria cases from 2010 to 2015 were obtained from the Epidemiological Surveillance Information System (SIVEP-Malaria). We calculated the Annual Parasite Incidence (API) (confirmed number of positive slides for parasite over 1 year for population under surveillance x 1000) and the monthly incidence in each of the 310 municipalities. Population data were obtained from the 2010 National census, and IBGE estimates were used for the years 2011 to 2015.
DOI: 10.6084/m9.figshare.5923567
title: LPIS_database.zip

description: LPIS database 2013 and 2016 for part of Czech Republic.
DOI: 10.6084/m9.figshare.5923567.v1
title: LPIS_database.zip

description: LPIS database 2013 and 2016 for part of Czech Republic.
DOI: 10.6084/m9.figshare.5923372
title: Utility of the Croatian translation of the community integration questionnaire-revised in a sample of adults with moderate to severe traumatic brain injury

description: <b>Purpose:</b> To examine the utility of the Community Integration Questionnaire-Revised, translated into Croatian, in a sample of adults with moderate to severe traumatic brain injury. <b>Method:</b> The Community Integration Questionnaire-Revised was administered to a sample of 88 adults with traumatic brain injury and to a control sample matched by gender, age and education. Participants with traumatic brain injury were divided into four subgroups according to injury severity. <b>Results:</b> The internal consistency of the Community Integration Questionnaire-Revised was satisfactory. The differences between the group with traumatic brain injury and the control group were statistically significant for the overall Community Integration Questionnaire-Revised score, as well as for all the subscales apart from the Home Integration subscale. The community Integration Questionnaire-Revised score varied significantly for subgroups with different severity of traumatic brain injury. <b>Conclusions:</b> The results show that the Croatian translation of the Community Integration Questionnaire-Revised is useful in assessing participation in adults with traumatic brain injury and confirm previous findings that severity of injury predicts community integration. Results of the new Electronic Social Networking scale indicate that persons who are more active on electronic social networks report better results for other domains of community integration, especially social activities. Implications for rehabilitationThe Croatian translation of the Community Integration Questionnaire-Revised is a valid tool for long-term assessment of participation in various domains in persons with moderate to severe traumatic brain injuryPersons with traumatic brain injury who are more active in the use of electronic social networking are also more integrated into social and productivity domains.Targeted training in the use of new technologies could enhance participation after traumatic brain injury. The Croatian translation of the Community Integration Questionnaire-Revised is a valid tool for long-term assessment of participation in various domains in persons with moderate to severe traumatic brain injury Persons with traumatic brain injury who are more active in the use of electronic social networking are also more integrated into social and productivity domains. Targeted training in the use of new technologies could enhance participation after traumatic brain injury.
DOI: 10.6084/m9.figshare.5923372.v2
title: Utility of the Croatian translation of the community integration questionnaire-revised in a sample of adults with moderate to severe traumatic brain injury

description: <b>Purpose:</b> To examine the utility of the Community Integration Questionnaire-Revised, translated into Croatian, in a sample of adults with moderate to severe traumatic brain injury. <b>Method:</b> The Community Integration Questionnaire-Revised was administered to a sample of 88 adults with traumatic brain injury and to a control sample matched by gender, age and education. Participants with traumatic brain injury were divided into four subgroups according to injury severity. <b>Results:</b> The internal consistency of the Community Integration Questionnaire-Revised was satisfactory. The differences between the group with traumatic brain injury and the control group were statistically significant for the overall Community Integration Questionnaire-Revised score, as well as for all the subscales apart from the Home Integration subscale. The community Integration Questionnaire-Revised score varied significantly for subgroups with different severity of traumatic brain injury. <b>Conclusions:</b> The results show that the Croatian translation of the Community Integration Questionnaire-Revised is useful in assessing participation in adults with traumatic brain injury and confirm previous findings that severity of injury predicts community integration. Results of the new Electronic Social Networking scale indicate that persons who are more active on electronic social networks report better results for other domains of community integration, especially social activities. Implications for rehabilitationThe Croatian translation of the Community Integration Questionnaire-Revised is a valid tool for long-term assessment of participation in various domains in persons with moderate to severe traumatic brain injuryPersons with traumatic brain injury who are more active in the use of electronic social networking are also more integrated into social and productivity domains.Targeted training in the use of new technologies could enhance participation after traumatic brain injury. The Croatian translation of the Community Integration Questionnaire-Revised is a valid tool for long-term assessment of participation in various domains in persons with moderate to severe traumatic brain injury Persons with traumatic brain injury who are more active in the use of electronic social networking are also more integrated into social and productivity domains. Targeted training in the use of new technologies could enhance participation after traumatic brain injury.
DOI: 10.6084/m9.figshare.5923324
title: OA Technology Options.xlsx

description: Table from Delta Think February 2018 News & Views newsletter - with technology options for OA publishing. Table is a small SAMPLE of technology options mostly for online hosting. For context see: https://scholarlykitchen.sspnet.org/2018/02/22/open-access-technology-options/
DOI: 10.6084/m9.figshare.5923312
title: Artifact evaluation for the ECMAScript Memory Model Evaluator (EMME) tool

description: This dataset contains the artifact evaluation for the ECMAScript Memory Model Evaluator (EMME) tool.<br><br>For more information how to use the tool, we refer to the README.txt file within the archive, or the web page http://www.mattarei.eu/cristian/dist/TACAS2018/<br>The EMME tool is held in a single .zip archive. The subdirectory <b>EMME-master </b>holds scripts, configurations, models, tests and examples to run the evaluator. The subdirectory <b>TACAS18-tests </b>contains the test outputs for valid executions as described in the related TACAS 2018 proceedings paper linked from this data record.<br>EMME is available here in open source Python format (<b>.py</b>). The input to EMME is a program with shared memory accesses. The tool interacts with the Alloy Analyzer (http://alloy.mit.edu/alloy/) to perform the formal analyses described in Section 4 of the related paper, which include the enumeration of valid executions and the generation of behavioral coverage constraints.<br><br>Briefly, given a JavaScript-like SharedArrayBuffer bounded execution program (see <b>.bex</b> files in the examples folder), EMME computes all valid executions according with the ECMA specification (http://tc39.github.io/ecmascript_sharedmem/shmem.html). The valid executions are provided as: 1) a set of graphviz files representing the memory model relations (i.e., <b>mm*.dot</b>), and 2) an assertion on the automatically generated JavaScript program (i.e., <b>program.js</b>).<br><b>Background</b><br>Nearly all web-based interfaces are written in JavaScript. Given its prevalence, the support for high performance JavaScript code is crucial. The ECMA Technical Committee 39 (TC39) has recently extended the ECMAScript language (i.e., JavaScript) to support shared memory accesses between different threads. The extension is given in terms of a natural language memory model specification. In this paper we describe a formal approach for validating both the memory model and its implementations in various JavaScript engines. The related publication introduces a formal version of the memory model and reports results on checking the model for consistency and other properties. We then introduce our tool, EMME, built on top of the Alloy analyzer, which leverages the model to generate all possible valid executions of a given JavaScript program. Finally, we report results using EMME together with small test programs to analyze industrial JavaScript engines. <br>
DOI: 10.6084/m9.figshare.5923312.v1
title: Artifact evaluation for the ECMAScript Memory Model Evaluator (EMME) tool

description: This dataset contains the artifact evaluation for the ECMAScript Memory Model Evaluator (EMME) tool.<br><br>For more information how to use the tool, we refer to the README.txt file within the archive, or the web page http://www.mattarei.eu/cristian/dist/TACAS2018/<br>The EMME tool is held in a single .zip archive. The subdirectory <b>EMME-master </b>holds scripts, configurations, models, tests and examples to run the evaluator. The subdirectory <b>TACAS18-tests </b>contains the test outputs for valid executions as described in the related TACAS 2018 proceedings paper linked from this data record.<br>EMME is available here in open source Python format (<b>.py</b>). The input to EMME is a program with shared memory accesses. The tool interacts with the Alloy Analyzer (http://alloy.mit.edu/alloy/) to perform the formal analyses described in Section 4 of the related paper, which include the enumeration of valid executions and the generation of behavioral coverage constraints.<br><br>Briefly, given a JavaScript-like SharedArrayBuffer bounded execution program (see <b>.bex</b> files in the examples folder), EMME computes all valid executions according with the ECMA specification (http://tc39.github.io/ecmascript_sharedmem/shmem.html). The valid executions are provided as: 1) a set of graphviz files representing the memory model relations (i.e., <b>mm*.dot</b>), and 2) an assertion on the automatically generated JavaScript program (i.e., <b>program.js</b>).<br><b>Background</b><br>Nearly all web-based interfaces are written in JavaScript. Given its prevalence, the support for high performance JavaScript code is crucial. The ECMA Technical Committee 39 (TC39) has recently extended the ECMAScript language (i.e., JavaScript) to support shared memory accesses between different threads. The extension is given in terms of a natural language memory model specification. In this paper we describe a formal approach for validating both the memory model and its implementations in various JavaScript engines. The related publication introduces a formal version of the memory model and reports results on checking the model for consistency and other properties. We then introduce our tool, EMME, built on top of the Alloy analyzer, which leverages the model to generate all possible valid executions of a given JavaScript program. Finally, we report results using EMME together with small test programs to analyze industrial JavaScript engines. <br>
DOI: 10.6084/m9.figshare.5923300
title: Treespace explorations

description: An interactive version of some of the treespace plots from 'Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study'
DOI: 10.6084/m9.figshare.5923300.v3
title: Treespace explorations

description: An interactive version of some of the treespace plots from 'Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study'
DOI: 10.6084/m9.figshare.5923300.v2
title: Treespace explorations

description: An interactive version of some of the treespace plots from 'Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study'
DOI: 10.6084/m9.figshare.5923216
title: A New Approach to Volatility Modeling: The Factorial Hidden Markov Volatility Model

description: A new process—the factorial hidden Markov volatility (FHMV) model—is proposed to model financial returns or realized variances. Its dynamics are driven by a latent volatility process specified as a product of three components: a Markov chain controlling volatility persistence, an independent discrete process capable of generating jumps in the volatility, and a predictable (data-driven) process capturing the leverage effect. An economic interpretation is attached to each one of these components. Moreover, the Markov chain and jump components allow volatility to switch abruptly between thousands of states, and the transition matrix of the model is structured to generate a high degree of volatility persistence. An empirical study on six financial time series shows that the FHMV process compares favorably to state-of-the-art volatility models in terms of in-sample fit and out-of-sample forecasting performance over time horizons ranging from 1 to 100 days. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.5923216.v1
title: A new approach to volatility modeling: the factorial hidden Markov volatility model

description: A new process — the factorial hidden Markov volatility (FHMV) model — is proposed to model financial returns or realized variances. Its dynamics are driven by a latent volatility process specified as a product of three components: a Markov chain controlling volatility persistence, an independent discrete process capable of generating jumps in the volatility, and a predictable (data-driven) process capturing the leverage effect. An economic interpretation is attached to each one of these components. Moreover, the Markov chain and jump components allow volatility to switch abruptly between thousands of states, and the transition matrix of the model is structured to generate a high degree of volatility persistence. An empirical study on six financial time series shows that the FHMV process compares favorably to state-of-the-art volatility models in terms of in-sample fit and out-of-sample forecasting performance over time horizons ranging from one to one hundred days.