cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/110804
title: INS (Inertial Navigation System) data collected during research cruise MGL1303 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477361.v1
title: Additional file 6 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: ZIP file containing BED5 format files of high and low read coverage regions. BED5 format file for each WGS accession. The score column (5th column) indicates if the feature (row) represents a region which has &gt;2*SD above (High) or below (Low) the mean read coverage. (ZIP 1455 kb)
DOI: 10.6084/m9.figshare.7477349
title: Additional file 4 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Awk helper script for creating correctly formatted GFF3 attribute information. Awk script for generating a file of correctly formatted GFF3 attributes of functional annotation information. It is called by the shell script for merging functional annotations (Additional file 3). (AWK 1 kb)
DOI: 10.7284/110798
title: Meteorological Station data collected during research cruise MGL1303 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477349.v1
title: Additional file 4 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Awk helper script for creating correctly formatted GFF3 attribute information. Awk script for generating a file of correctly formatted GFF3 attributes of functional annotation information. It is called by the shell script for merging functional annotations (Additional file 3). (AWK 1 kb)
DOI: 10.6084/m9.figshare.7477355
title: Additional file 5 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: MAPQ distribution table. Table showing MAPQ distribution for each WGS accession. Number of aligned reads with a given MAPQ are show together with the cumulative sum of reads â Ľ to a given MAPQ (expressed both as a percentage of the aligned read as well as the raw reads). (TAB 28 kb)
DOI: 10.6084/m9.figshare.7477355.v1
title: Additional file 5 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: MAPQ distribution table. Table showing MAPQ distribution for each WGS accession. Number of aligned reads with a given MAPQ are show together with the cumulative sum of reads â Ľ to a given MAPQ (expressed both as a percentage of the aligned read as well as the raw reads). (TAB 28 kb)
DOI: 10.7284/110796
title: Multibeam Echosounder data collected during research cruise MGL1303 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477340
title: Additional file 3 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Script for merging functional annotations into gene models. Shell script to merge functional annotation information into the High and Low confidence gene model GFF3 files. (SH 2 kb)
DOI: 10.6084/m9.figshare.7477340.v1
title: Additional file 3 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Script for merging functional annotations into gene models. Shell script to merge functional annotation information into the High and Low confidence gene model GFF3 files. (SH 2 kb)
DOI: 10.6084/m9.figshare.7477331
title: Additional file 2 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Perl helper script for splitting GFF3 files. Perl script for splitting a GFF3 file at chromosomal coordinates defined in a BED file. This converts GFF3 coordinates from full length pseudomolecules to their â partsâ and is called by the preprocessing shell script (Additional file 1). (PL 3 kb)
DOI: 10.7284/110799
title: Singlebeam Echosounder data collected during research cruise MGL1303 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477328
title: Additional file 1 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: IWGSC RefSeq v1.0 annotation preprocessing shell script. Shell script to download, validate and modify IWGSC RefSeq v1.0 annotation files, including splitting GFF3 files based on boundaries defined by the IWGSC. (SH 9 kb)
DOI: 10.6084/m9.figshare.7477331.v1
title: Additional file 2 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: Perl helper script for splitting GFF3 files. Perl script for splitting a GFF3 file at chromosomal coordinates defined in a BED file. This converts GFF3 coordinates from full length pseudomolecules to their â partsâ and is called by the preprocessing shell script (Additional file 1). (PL 3 kb)
DOI: 10.6084/m9.figshare.7477319
title: Additional file 1: of Prevalence of metallo-Î˛-lactamase acquired genes among carbapenems susceptible and resistant Gram-negative clinical isolates using multiplex PCR, Khartoum hospitals, Khartoum Sudan

description: Samples, strains, PCR result information. (XLSX 18â kb)
DOI: 10.7284/110821
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1304 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7477319.v1
title: Additional file 1: of Prevalence of metallo-Î˛-lactamase acquired genes among carbapenems susceptible and resistant Gram-negative clinical isolates using multiplex PCR, Khartoum hospitals, Khartoum Sudan

description: Samples, strains, PCR result information. (XLSX 18â kb)
DOI: 10.6084/m9.figshare.7477328.v1
title: Additional file 1 of DAWN: a resource for yielding insights into the diversity among wheat genomes

description: IWGSC RefSeq v1.0 annotation preprocessing shell script. Shell script to download, validate and modify IWGSC RefSeq v1.0 annotation files, including splitting GFF3 files based on boundaries defined by the IWGSC. (SH 9 kb)
DOI: 10.6084/m9.figshare.12885470
title: Gene annotations (GFF)

description: Gene annotations for 8 de novo soybean assemblies in GFF format.
DOI: 10.7284/110816
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1304 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110818
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1304 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110819
title: Gravimeter data collected during research cruise MGL1304 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110811
title: Gyrocompass data collected during research cruise MGL1304 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110817
title: INS (Inertial Navigation System) data collected during research cruise MGL1304 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110820
title: INS (Inertial Navigation System) data collected during research cruise MGL1304 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110814
title: Meteorological Station data collected during research cruise MGL1304 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110810
title: Multibeam Echosounder data collected during research cruise MGL1304 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476503
title: ROCK2 regulates TGF-β–induced expression of CTGF and profibrotic genes via NF-κB and cytoskeleton dynamics in the mesangial cells

description: Supplemental file
DOI: 10.6084/m9.figshare.7476503.v1
title: ROCK2 regulates TGF-β–induced expression of CTGF and profibrotic genes via NF-κB and cytoskeleton dynamics in the mesangial cells

description: Supplemental file
DOI: 10.7284/110812
title: pCO2 (Partial Pressure of Carbon Dioxide) data collected during research cruise MGL1304 using a LDEO pCO2 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110815
title: Singlebeam Echosounder data collected during research cruise MGL1304 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110813
title: TSG (Thermosalinograph) data collected during research cruise MGL1304 using a Sea-Bird SBE-21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110839
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1305 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110826
title: Expendable Probe data collected during research cruise MGL1305 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110834
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1305 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476422
title: FLUX-LM_1.01.xlsm

description: FLUX-LM is a macro enabled Excel spreadsheet tool for automating the analyses of 1D vertical fluxes from temperature-depth profiles.<br>FLUX-LM can estimate fluxes using a point in time temperature-depth profile and estimate of saturated thermal conductivity. In the case of layered media, thermal conductivies and layer thicknesses are required.<br>Version 1.01 has a minor change from the version released with the original Hydrological Processes article (DOI: 10.1002/hyp.11216).<br>
DOI: 10.7284/110836
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1305 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476413
title: anthropogenic_anolis_abundance_DR

description: Results from multi-species mark resight model of 11 anolis species in 56 plots along land-use and climate gradients.
DOI: 10.6084/m9.figshare.7476413.v1
title: anthropogenic_anolis_abundance_DR

description: Results from multi-species mark resight model of 11 anolis species in 56 plots along land-use and climate gradients.
DOI: 10.7284/110837
title: Gravimeter data collected during research cruise MGL1305 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476359
title: Raw data for Discovery of New Mycoviral Genomes Within Publically Available Fungal RNA-seq Datasets

description: Raw data for each main and supplemental figure plus Perl and R scripts used for data processing.
DOI: 10.7284/110829
title: Gyrocompass data collected during research cruise MGL1305 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110835
title: INS (Inertial Navigation System) data collected during research cruise MGL1305 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476359.v1
title: Raw data for Discovery of New Mycoviral Genomes Within Publically Available Fungal RNA-seq Datasets

description: Raw data for each main and supplemental figure plus Perl and R scripts used for data processing.
DOI: 10.7284/110838
title: INS (Inertial Navigation System) data collected during research cruise MGL1305 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/110828
title: Magnetometer data collected during research cruise MGL1305 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25390/caryinstitute.7476233
title: Cary Environmental Monitoring Program 3-Minute Meteorological and Solar Radiation Data (2011-2017)

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, and water pollution and other streamwater chemistry. Our solar radiation monitoring includes diffuse and global photosynthetically active radiation (PAR), diffuse and global shortwave radiation, net radiation and UV. Long-term monitoring of solar radiation provides us with an understanding of atmospheric energy dynamics, which can affect natural and human systems. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: The following is a standard citation for referencing data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program:<br>Cary Institute of Ecosystem Studies, Environmental Monitoring Program. 2008 (or current year). Cary Institute of Ecosystem Studies, Box AB, Millbrook, NY 12545, www.caryinstitute.org. <br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.
DOI: 10.25390/caryinstitute.7476233.v1
title: Cary Environmental Monitoring Program 3-Minute Meteorological and Solar Radiation Data (2011-2017)

description: The Cary Institute of Ecosystem Studies Environmental Monitoring Program is a long-term data collection program designed to understand how the environment changes over time. The program includes monitoring of climate including temperature and precipitation, as well as variables related to air pollution, such as acid deposition and ozone, and water pollution and other streamwater chemistry. Our solar radiation monitoring includes diffuse and global photosynthetically active radiation (PAR), diffuse and global shortwave radiation, net radiation and UV. Long-term monitoring of solar radiation provides us with an understanding of atmospheric energy dynamics, which can affect natural and human systems. The Cary Institute of Ecosystem Studies, Environmental Monitoring Program furnishes data under the following conditions: The data have received quality assurance scrutiny by our program, and, although we are confident of the accuracy of these data, the Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: The following is a standard citation for referencing data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program:<br>Cary Institute of Ecosystem Studies, Environmental Monitoring Program. 2008 (or current year). Cary Institute of Ecosystem Studies, Box AB, Millbrook, NY 12545, www.caryinstitute.org. <br>Those wishing to publish data from the Cary Institute of Ecosystem Studies, Environmental Monitoring Program are encouraged to contact Data Manager Vicky Kelly, kellyv@caryinstitute.org.
DOI: 10.6084/m9.figshare.7476230
title: Polyphenol Consumption.xlsx

description: This data contain age ranges,gestacional age, weight, height, IMC and polyphenol comsumption of pregnant women that participated the research in the south of Brazil.<br>
DOI: 10.7284/110832
title: Meteorological Station data collected during research cruise MGL1305 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476227
title: Effect of a change in reactor power on response of murine solid tumors in vivo, referring to impact on quiescent tumor cell population

description: <b>Purpose:</b> To examine the effect of a change in reactor power on the response of solid tumors, referring to impact on quiescent (Q) tumor cell population. <b>Materials and methods:</b> Tumor-bearing mice received 5-bromo-2′-deoxyuridine (BrdU) to label all proliferating (P) tumor cells, and were treated with boronophenylalanine-<sup>10</sup>B (BPA) or sodium mercaptododecaborate-<sup>10</sup>B (BSH). After reactor neutron beam irradiation at a power of 1 or 5 MW with an identical beam spectrum, cells from tumors were isolated and incubated with a cytokinesis blocker. The responses of BrdU-unlabeled Q and total (P + Q) tumor cells were assessed based on the frequencies of micronucleation using immunofluorescence staining for BrdU. <b>Results:</b> After neutron irradiation with or without <sup>10</sup>B-carrier, radio-sensitivity was reduced by decreasing reactor power in both cells, especially in Q cells and after irradiation with BPA. The values of relative and compound biological effectiveness were larger at a power of 5 MW and in Q cells than at a power of 1 MW and in total cells, respectively. The sensitivity difference between total and Q cells was widened when combined with <sup>10</sup>B-carrier, especially with BPA, and through decreasing reactor power. <b>Conclusion:</b> 5 MW is more advantageous than 1 MW for boron neutron capture therapy.
DOI: 10.7284/110827
title: Multibeam Echosounder data collected during research cruise MGL1305 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7476227.v2
title: Effect of a change in reactor power on response of murine solid tumors in vivo, referring to impact on quiescent tumor cell population

description: <b>Purpose:</b> To examine the effect of a change in reactor power on the response of solid tumors, referring to impact on quiescent (Q) tumor cell population. <b>Materials and methods:</b> Tumor-bearing mice received 5-bromo-2′-deoxyuridine (BrdU) to label all proliferating (P) tumor cells, and were treated with boronophenylalanine-<sup>10</sup>B (BPA) or sodium mercaptododecaborate-<sup>10</sup>B (BSH). After reactor neutron beam irradiation at a power of 1 or 5 MW with an identical beam spectrum, cells from tumors were isolated and incubated with a cytokinesis blocker. The responses of BrdU-unlabeled Q and total (P + Q) tumor cells were assessed based on the frequencies of micronucleation using immunofluorescence staining for BrdU. <b>Results:</b> After neutron irradiation with or without <sup>10</sup>B-carrier, radio-sensitivity was reduced by decreasing reactor power in both cells, especially in Q cells and after irradiation with BPA. The values of relative and compound biological effectiveness were larger at a power of 5 MW and in Q cells than at a power of 1 MW and in total cells, respectively. The sensitivity difference between total and Q cells was widened when combined with <sup>10</sup>B-carrier, especially with BPA, and through decreasing reactor power. <b>Conclusion:</b> 5 MW is more advantageous than 1 MW for boron neutron capture therapy.
DOI: 10.6084/m9.figshare.7476191
title: Evaluation of mature miR398 family, expression analysis and the post-transcriptional regulation evidence in gamma-irradiated and nitrogen-stressed <i>Medicago sativa</i> seedlings

description: <b>Background:</b> The miR398 (microRNA398) posttranscriptionally regulates the superoxide dismutase (Cu/Zn-SOD). <b>Materials and methods:</b> The miR398 level was quantitated in gamma-irradiated (20Gy and 200Gy) and nitrogen-stressed seedlings by stem-loop RT-PCR (Real Time-Polymerase chain reaction). The positional preference of nucleotide (nt) for miR398 families and new targets was done. The SOD enzyme was assayed in native PAGE (Polyacrylamide gel electrophoresis). <b>Results:</b> A relative increase in miR398-3p expression in the roots, and reduction in shoots for gamma-irradiated tissue and downregulation in miR398-5p in shoots is noted. The nitrogen stress shows upregulation of miR398-3p in roots and shoots, whereas the expression of miR398-5p is upregulated in roots and downregulated in shoots. Positional preference in miR398-3p for 1–14 nt is 90% conserved unlike miR398-5p where no nucleotide positional preference is seen. Targets obtained were functionally characterized. <b>Conclusions:</b> The mature miR398-5p and miR398-3p levels estimated in gamma-irradiated (20 and 200Gy) and nitrogen-stressed <i>Medicago sativa</i> seedlings show differential levels in roots and shoots. Native PAGE of Cu/Zn-SOD suggests its negative correlation with miR398 in shoots of irradiated and nitrogen-stressed samples. The nucleotide preferences for the nucleotide for a given position and functional characterization of targets are reported herein.