cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13220568
title: Single Cell RNA Transcriptomics of Mantle Cell Lymphoma Reveals the Presence of Treatment-Resistant Subclones at the Time of Diagnosis - Supplementary Data

description: Supplemental Table 4. Results of optical genomic mapping for patient P009. The table lists genomic aberrations shared for diagnosis and relapse and those exclusive at both timepoints.

Supplemental Table 5. Results of differential gene expression analysis between relapse and diagnosis MCL cells of four patients (P009, P022, P027 and P087) performed using Wilcoxon rank-sum test. Only genes with adjusted p-value < 0.05, absolute log2 fold change > 1, and expression in at least 25% of relapse cells are included.

Supplemental Table 9. Copy number (CN) variations of the subclones detected using inferCNV.

Supplemental Table 10. Copy number variations of the subclones detected using inferCNV clustering and intersected with copy number variations predicted using WES data.

Supplemental Table 11. Gene Set Enrichment Analysis (GSEA) of GO Biological Processes for resistant vs. sensitive subclones at diagnosis. GSEA results showing enriched GO Biological Process terms in resistant versus sensitive MCL subclones at diagnosis for each patient (P009, P022, P027, P087). Positive NES values indicate enrichment in resistant subclones. Only terms with q-value < 0.05 are shown.

Supplemental Table 12. Gene Set Enrichment Analysis of Hallmark pathways for resistant vs. sensitive subclones at diagnosis. GSEA results showing enriched MSigDB Hallmark pathways in resistant versus sensitive MCL subclones at diagnosis for each patient (P009, P022, P027, P087). Positive NES values indicate enrichment in resistant subclones. Only terms with q-value < 0.05 are shown.

Supplemental Table 13. Results of differential gene expression comparison between relapse and diagnosis MCL cells of four patients (P009, P022, P027 and P087) performed using Wilcoxon rank-sum test. Only genes with adjusted p-value < 0.05, absolute log2 fold change > 1, and expression in at least 25% of cells in the upregulated group are included.

Supplemental Table 14. Somatic nucleotide variants detected in P069 PBMC at diagnosis and in the infiltrated intestine (Int) at relapse. The variants were called using Mutect2 and annotated using Gencode43 database.

Supplemental Data Object 1. SingleCellExperiment object with 58 702 cells passed QC and 36601 genes. Data columns include sample, patient, timepoint, compartment, cell type annotation (cell_type), cell cycle phase (Phase), tumor subclones (inferCNV_subclone).
DOI: 10.5281/zenodo.18200523
title: Single Cell RNA Transcriptomics of Mantle Cell Lymphoma Reveals the Presence of Treatment-Resistant Subclones at the Time of Diagnosis - Supplementary Data

description: Supplemental Table 4. Results of optical genomic mapping for patient P009. The table lists genomic aberrations shared for diagnosis and relapse and those exclusive at both timepoints.

Supplemental Table 5. Results of differential gene expression analysis between relapse and diagnosis MCL cells of four patients (P009, P022, P027 and P087) performed using Wilcoxon rank-sum test. Only genes with adjusted p-value < 0.05, absolute log2 fold change > 1, and expression in at least 25% of relapse cells are included.

Supplemental Table 9. Copy number (CN) variations of the subclones detected using inferCNV.

Supplemental Table 10. Copy number variations of the subclones detected using inferCNV clustering and intersected with copy number variations predicted using WES data.

Supplemental Table 11. Gene Set Enrichment Analysis (GSEA) of GO Biological Processes for resistant vs. sensitive subclones at diagnosis. GSEA results showing enriched GO Biological Process terms in resistant versus sensitive MCL subclones at diagnosis for each patient (P009, P022, P027, P087). Positive NES values indicate enrichment in resistant subclones. Only terms with q-value < 0.05 are shown.

Supplemental Table 12. Gene Set Enrichment Analysis of Hallmark pathways for resistant vs. sensitive subclones at diagnosis. GSEA results showing enriched MSigDB Hallmark pathways in resistant versus sensitive MCL subclones at diagnosis for each patient (P009, P022, P027, P087). Positive NES values indicate enrichment in resistant subclones. Only terms with q-value < 0.05 are shown.

Supplemental Table 13. Results of differential gene expression comparison between relapse and diagnosis MCL cells of four patients (P009, P022, P027 and P087) performed using Wilcoxon rank-sum test. Only genes with adjusted p-value < 0.05, absolute log2 fold change > 1, and expression in at least 25% of cells in the upregulated group are included.

Supplemental Table 14. Somatic nucleotide variants detected in P069 PBMC at diagnosis and in the infiltrated intestine (Int) at relapse. The variants were called using Mutect2 and annotated using Gencode43 database.

Supplemental Data Object 1. SingleCellExperiment object with 58 702 cells passed QC and 36601 genes. Data columns include sample, patient, timepoint, compartment, cell type annotation (cell_type), cell cycle phase (Phase), tumor subclones (inferCNV_subclone).
DOI: 10.15156/bio/sh0180153.10fu
title: SH0180153.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180154.10fu
title: SH0180154.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180155.10fu
title: SH0180155.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180156.10fu
title: SH0180156.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180157.10fu
title: SH0180157.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180158.10fu
title: SH0180158.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0180159.10fu
title: SH0180159.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.dsqcx9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gymnosiphon afro-orientalis Cheek"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234730-230224095556074/datasets/export for details.
DOI: 10.15468/dl.r2z5r4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aphis aurantii Boyer de Fonscolombe, 1841",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210930-220831081235567/datasets/export for details.
DOI: 10.15468/dl.qn683q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Siphona cristata (Fabricius, 1805)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219972-220831081235567/datasets/export for details.
DOI: 10.15468/dl.bdf87x
title: Occurrence Download

description: A dataset containing 1395 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hordeum californicum Covas & Stebbins"
 ]
}

 The dataset includes 1395 records from 60 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248775-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.647qw8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Impatientinum impatiens (Shinji, 1922)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0210932-220831081235567/datasets/export for details.
DOI: 10.15468/dl.rvus9h
title: Occurrence Download

description: A dataset containing 46970 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica oleracea L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 46970 records from 539 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266280-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6wd5e
title: Occurrence Download

description: A dataset containing 207679 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vinca minor L.",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 207679 records from 1055 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266281-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zxj7bv
title: Occurrence Download

description: A dataset listing the 4368 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "DatasetKey is Global Register of Introduced and Invasive Species - United States (Contiguous) (ver.2.0, 2022)",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 4368 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038051-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndcqda
title: Occurrence Download

description: A dataset containing 2214 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is White shark tagging off New Zealand"
 ]
}

 The dataset includes 2214 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038040-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.slxk5y
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nerine frithii L.Bolus"
 ]
}

 The dataset includes 37 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007696-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nevyfx
title: Occurrence Download

description: A dataset containing 11861 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "IucnRedListCategory is EN",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 11861 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045754-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2tuzx
title: Occurrence Download

description: A dataset containing 8273655 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Consortium of California Herbaria"
 ]
}

 The dataset includes 8273655 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007696-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvg9z6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lanonia montana A.J.Hend. & N.Q.Dung"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038063-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55q24q
title: Occurrence Download

description: A dataset containing 1474 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Living Specimen, Occurrence evidence)",
 "Country is India",
 "OccurrenceStatus is Present",
 "TaxonKey is Elephas maximus Linnaeus, 1758",
 "Year 1974-2024"
 ]
}

 The dataset includes 1474 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045762-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.72xrns
title: Occurrence Download

description: A dataset containing 2091617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((10.58670799806848 40.92226156946407, 10.58670799806848 51.75700516880109, -10.173017805596453 51.75700516880109, -10.173017805596453 40.92226156946407, 10.58670799806848 40.92226156946407))",
 "EventDate is 2019-07-01,2019-07-31"
 ]
}

 The dataset includes 2091617 records from 1734 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045750-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.15249.56167
title: Adhesion and friction in hard and soft contacts_tangential_motion_R=100mm_d=-0.015mm.avi
DOI: 10.13140/rg.2.2.34281.21609
title: Black Holes
DOI: 10.13140/rg.2.2.17792.35840
title: Adhesion and friction in hard and soft contacts_Fig_13.avi
DOI: 10.13140/rg.2.2.31476.27529
title: HTC BBDST P N20 48.008
DOI: 10.13140/rg.2.2.32839.42401/1
title: Energy Contributions of Aerodynamic Strips to X-56A Body-Freedom and Bending-Torsion Flutter (Animation)
DOI: 10.2908/spr_exp_eur
title: Tables by functions, aggregated benefits and grouped schemes - million EUR
title: Tableaux par fonctions, prestations génériques et regroupement de régimes - millions d'EUR
title: Tabellen pro Funktion, aggregierte Leistungen und gruppierte Systeme - Millionen EUR
DOI: 10.2908/spr_exp_gdp
title: Tables by functions, aggregated benefits and grouped schemes - in % of the GDP
title: Tableaux par fonctions, prestations génériques et regroupement de régimes - en % du PIB
title: Tabellen pro Funktion, aggregierte Leistungen und gruppierte Systeme - in % des BIP
DOI: 10.2908/spr_exp_nac
title: Tables by functions, aggregated benefits and grouped schemes - in MIO of national currency
title: Tableaux par fonctions, prestations génériques et regroupement de régimes - en MIO de monnaie nationale
title: Tabellen pro Funktion, aggregierte Leistungen und gruppierte Systeme - in MIO Landeswährung
DOI: 10.2908/spr_exp_pps
title: Tables by functions, aggregated benefits and grouped schemes - in MIO of PPS
title: Tableaux par fonctions, prestations génériques et regroupement de régimes - en MIO de SPA
title: Tabellen pro Funktion, aggregierte Leistungen und gruppierte Systeme - in MIO KKS
DOI: 10.2908/spr_exp_ppsh
title: Tables by functions, aggregated benefits and grouped schemes - in PPS per head
title: Tableaux par fonctions, prestations génériques et regroupement de régimes - en SPA par habitant
title: Tabellen pro Funktion, aggregierte Leistungen und gruppierte Systeme - in KKS pro Einwohner
DOI: 10.2908/spr_exp_sum
title: Expenditure: main results
title: Dépenses : principaux résultats
title: Ausgaben: wichtigste Ergebnisse
DOI: 10.2908/spr_rec_eur
title: Receipts - tables by sector of origin and type, million EUR
title: Recettes - tableaux par secteur de provenance et type, millions d'EUR
title: Einnahmen - Tabellen nach Herkunftssektoren und Typen, Millionen EUR
DOI: 10.2908/spr_rec_gdp
title: Receipts - Tables by sector of origin and type, in % of the GDP
title: Recettes - Tableaux par secteur de provenance et type, en % du PIB
title: Einnahmen - Tabellen nach Herkunftssektoren und Typen, in % des BIP
DOI: 10.15468/dl.8mmh9d
title: Occurrence Download

description: A dataset containing 90003 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-3.34338 43.22329,-3.09222 43.22329,-3.09222 43.43891,-3.34338 43.43891,-3.34338 43.22329))"
 ]
}

 The dataset includes 90003 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000357-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.