cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12108984.v1
title: Dataset of male rat copulatory behavior

description: Data was obtained from two cohorts of 25 sexually naive male rats each one (n=50). They were tested in 6 weekly copulatory encounters aimed at classifying them based on Ejaculation Latency or Ejaculation Number. We recorded, per male rat, the next copulatory parameters: latencies of mount, intromission and ejaculation, displayed as the mean of averaging the total ejacualtory series in seconds; and the accumulated number of mounts, intromissions and ejaculations for all the ejaculatory series executed in every 30-minute copulatory test. We used this dataset to build a PCA biplot and a complete-linkage dendrogram.<br>
DOI: 10.6084/m9.figshare.12108945.v1
title: Qinling

description: Supplementary tables
DOI: 10.6084/m9.figshare.12108819
title: Apohemoglobin-Haptoglobin Complex Attenuates the Pathobiology of Circulating Acellular Hemoglobin and Heme

description: Baseline diameter, velocity and flow for arterioles and venules.
DOI: 10.6084/m9.figshare.12108792
title: Swissprot PPIs

description: Swissprot PPI
DOI: 10.6084/m9.figshare.12108735
title: PCA data fr table 1 vs table 3-12

description: PCA data for https://pubs.acs.org/doi/pdf/10.1021/acs.jmedchem.9b02075<br>
DOI: 10.6084/m9.figshare.12108819.v1
title: Apohemoglobin-Haptoglobin Complex Attenuates the Pathobiology of Circulating Acellular Hemoglobin and Heme

description: Baseline diameter, velocity and flow for arterioles and venules.
DOI: 10.6084/m9.figshare.12108735.v1
title: PCA data fr table 1 vs table 3-12

description: PCA data for https://pubs.acs.org/doi/pdf/10.1021/acs.jmedchem.9b02075<br>
DOI: 10.6084/m9.figshare.12108792.v1
title: Swissprot PPIs

description: Swissprot PPI
DOI: 10.6084/m9.figshare.12108585
title: BoB_May

description: Copernicus marine service<br>Global Observed Ocean Physics Temperature Salinity Heights MLD Geostrophic Currents Sea Surface Salinity and Sea Surface Density Reprocessing<br>Contains variables: mixed layer depth, salinity, temperature, geostrophic zonal velocity from thermal wind equation, geostrophic meridional velocity from thermal wind equation, absolute height.
DOI: 10.6084/m9.figshare.12108435
title: Table 3-12 structures

description: molecules from Tables 3-12 https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12108507
title: Pollen_data_JGR_2007.xls

description: Pollen data from the northern foreland basin of Tian Shan
DOI: 10.6084/m9.figshare.12108408
title: Table 1 structures

description: Molecule structures from https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12108435.v2
title: Table 3-12 structures

description: molecules from Tables 3-12 https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12108585.v1
title: BoB_May

description: Copernicus marine service<br>Global Observed Ocean Physics Temperature Salinity Heights MLD Geostrophic Currents Sea Surface Salinity and Sea Surface Density Reprocessing<br>Contains variables: mixed layer depth, salinity, temperature, geostrophic zonal velocity from thermal wind equation, geostrophic meridional velocity from thermal wind equation, absolute height.
DOI: 10.6084/m9.figshare.12108435.v1
title: Table 3-12

description: molecules from Tables 3-12 https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12108585.v3
title: BoB_May

description: Copernicus marine service<br>Global Observed Ocean Physics Temperature Salinity Heights MLD Geostrophic Currents Sea Surface Salinity and Sea Surface Density Reprocessing<br>Contains variables: mixed layer depth, salinity, temperature, geostrophic zonal velocity from thermal wind equation, geostrophic meridional velocity from thermal wind equation, absolute height.
DOI: 10.6084/m9.figshare.12108117
title: Data from: Hierarchical fear: parental behaviour and corticosterone release mediate nestling growth in response to predation risk

description: Nestling development, a critical life-stage for altricial songbirds, is highly vulnerable to predation, particularly for open-cup nesting species. Since nest predation risk increases cumulatively with time, rapid growth may be an adaptive response that promotes early fledging. However, greater predation risk can reduce parental provisioning rate as a risk aversion strategy and subsequently constrain nestling growth, or directly elicit a physiological response in nestlings with adaptive or detrimental effects on development rate. Despite extensive theory, evidence for the relative strength of these effects on nestling development in response to prevailing predation risk and the underlying mechanisms remain unclear. For an alpine population of horned lark (<i>Eremophila alpestris</i>), we elevated perceived predation risk (decoys/playback) during the nestling stage to assess the influence of predator cues and parental care on nestling wing growth and the glucocorticoid hormone corticosterone. We used piecewise path analysis to test a hypothesized causal response structure composed of direct and indirect pathways. Nestlings under greater perceived predation risk reduced corticosterone and increased wing growth, resulting in an earlier age at fledge. This represented both a direct response that was predator-specific, and an indirect response dependent on parental provisioning rate. Parents that reduced provisioning rate most severely in response to predator cues had smaller nestlings with greater corticosterone. Model comparisons indicated the strongest support for a directed, causal influence of corticosterone on nestling wing growth, highlighting corticosterone as a potential physiological mediator of the nestling growth response to predation risk. Finally, cold temperatures prior to the experiment constrained wing growth closer to fledge, illustrating the importance of considering the combined influence of weather and predation risk across developmental stages. We present the first study to separate the direct and indirect effects of predation risk on nestling development in a causal, hierarchical framework that incorporates corticosterone as an underlying mechanism and provides experimental evidence for an adaptive developmental response to predation risk in ground-nesting songbirds.
DOI: 10.6084/m9.figshare.12108408.v1
title: Table 1 structures

description: Molecule structures from https://pubs.acs.org/doi/10.1021/acs.jmedchem.9b02075
DOI: 10.6084/m9.figshare.12108585.v2
title: BoB_May

description: Copernicus marine service<br>Global Observed Ocean Physics Temperature Salinity Heights MLD Geostrophic Currents Sea Surface Salinity and Sea Surface Density Reprocessing<br>Contains variables: mixed layer depth, salinity, temperature, geostrophic zonal velocity from thermal wind equation, geostrophic meridional velocity from thermal wind equation, absolute height.
DOI: 10.6084/m9.figshare.12107721
title: Global Phosphotyrosinylated Protein Profile of Cell-Matrix Adhesion Complexes of Trabecular Meshwork Cells

description: Analysis of the phosphotyrosine proteome of human trabecular meshwork (TM) cell-extracellular matrix (ECM) adhesion complexes.<br>
DOI: 10.6084/m9.figshare.12107514
title: Data

description: Raw data used in this manuscript
DOI: 10.6084/m9.figshare.12108117.v2
title: Data from: Hierarchical fear: parental behaviour and corticosterone release mediate nestling growth in response to predation risk

description: Nestling development, a critical life-stage for altricial songbirds, is highly vulnerable to predation, particularly for open-cup nesting species. Since nest predation risk increases cumulatively with time, rapid growth may be an adaptive response that promotes early fledging. However, greater predation risk can reduce parental provisioning rate as a risk aversion strategy and subsequently constrain nestling growth, or directly elicit a physiological response in nestlings with adaptive or detrimental effects on development rate. Despite extensive theory, evidence for the relative strength of these effects on nestling development in response to prevailing predation risk and the underlying mechanisms remain unclear. For an alpine population of horned lark (<i>Eremophila alpestris</i>), we elevated perceived predation risk (decoys/playback) during the nestling stage to assess the influence of predator cues and parental care on nestling wing growth and the glucocorticoid hormone corticosterone. We used piecewise path analysis to test a hypothesized causal response structure composed of direct and indirect pathways. Nestlings under greater perceived predation risk reduced corticosterone and increased wing growth, resulting in an earlier age at fledge. This represented both a direct response that was predator-specific, and an indirect response dependent on parental provisioning rate. Parents that reduced provisioning rate most severely in response to predator cues had smaller nestlings with greater corticosterone. Model comparisons indicated the strongest support for a directed, causal influence of corticosterone on nestling wing growth, highlighting corticosterone as a potential physiological mediator of the nestling growth response to predation risk. Finally, cold temperatures prior to the experiment constrained wing growth closer to fledge, illustrating the importance of considering the combined influence of weather and predation risk across developmental stages. We present the first study to separate the direct and indirect effects of predation risk on nestling development in a causal, hierarchical framework that incorporates corticosterone as an underlying mechanism and provides experimental evidence for an adaptive developmental response to predation risk in ground-nesting songbirds.
DOI: 10.6084/m9.figshare.12107721.v1
title: Global Phosphotyrosinylated Protein Profile of Cell-Matrix Adhesion Complexes of Trabecular Meshwork Cells

description: Analysis of the phosphotyrosine proteome of human trabecular meshwork (TM) cell-extracellular matrix (ECM) adhesion complexes.<br>
DOI: 10.6084/m9.figshare.12108117.v1
title: Data from: Hierarchical fear: parental behaviour and corticosterone release mediate nestling growth in response to predation risk

description: Nestling development, a critical life-stage for altricial songbirds, is highly vulnerable to predation, particularly for open-cup nesting species. Since nest predation risk increases cumulatively with time, rapid growth may be an adaptive response that promotes early fledging. However, greater predation risk can reduce parental provisioning rate as a risk aversion strategy and subsequently constrain nestling growth, or directly elicit a physiological response in nestlings with adaptive or detrimental effects on development rate. Despite extensive theory, evidence for the relative strength of these effects on nestling development in response to prevailing predation risk and the underlying mechanisms remain unclear. For an alpine population of horned lark (<i>Eremophila alpestris</i>), we elevated perceived predation risk (decoys/playback) during the nestling stage to assess the influence of predator cues and parental care on nestling wing growth and the glucocorticoid hormone corticosterone. We used piecewise path analysis to test a hypothesized causal response structure composed of direct and indirect pathways. Nestlings under greater perceived predation risk reduced corticosterone and increased wing growth, resulting in an earlier age at fledge. This represented both a direct response that was predator-specific, and an indirect response dependent on parental provisioning rate. Parents that reduced provisioning rate most severely in response to predator cues had smaller nestlings with greater corticosterone. Model comparisons indicated the strongest support for a directed, causal influence of corticosterone on nestling wing growth, highlighting corticosterone as a potential physiological mediator of the nestling growth response to predation risk. Finally, cold temperatures prior to the experiment constrained wing growth closer to fledge, illustrating the importance of considering the combined influence of weather and predation risk across developmental stages. We present the first study to separate the direct and indirect effects of predation risk on nestling development in a causal, hierarchical framework that incorporates corticosterone as an underlying mechanism and provides experimental evidence for an adaptive developmental response to predation risk in ground-nesting songbirds.
DOI: 10.6084/m9.figshare.12107514.v2
title: Data

description: Raw data used in this manuscript
DOI: 10.6084/m9.figshare.12107325
title: Maternal Care Datasets & Code

description: R code and all associated datasets for all analyses in "Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success" by Westrick et al.
DOI: 10.6084/m9.figshare.12107514.v1
title: Data

description: Raw data used in this manuscript
DOI: 10.6084/m9.figshare.12107190
title: The Science-P Reasoning Inventory (SPR-I): measuring emerging scientific-reasoning skills in primary school

description: Scientific reasoning is a crucial ability in modern knowledge societies. An increasing body of developmental and educational research shows that already primary-school children possess emerging scientific-reasoning skills. The Science-P Reasoning Inventory (SPR-I) is a novel classroom-based paper-and-pencil instrument that was developed to measure children’s conceptual advances across diverse components of scientific reasoning (experimentation, data interpretation, understanding the nature of science). The SPR-I comprises 19 items, and a reduced, 7-item version is available: the SPR-I(7). Both versions measure broad scientific-reasoning skills and they can be used for whole-class testing. The administration of the SPR-I(7) requires only 30 min, allowing for its use across diverse research settings and the economic assessment of large samples of primary-school students. This article reports on the first empirical test (IRT analysis) of the theoretical, conceptual-development model that guided the construction of the SPR-I. Both the SPR-I and the SPR-I(7) are available from the Supplementary Materials.
DOI: 10.6084/m9.figshare.12107190.v1
title: The Science-P Reasoning Inventory (SPR-I): measuring emerging scientific-reasoning skills in primary school

description: Scientific reasoning is a crucial ability in modern knowledge societies. An increasing body of developmental and educational research shows that already primary-school children possess emerging scientific-reasoning skills. The Science-P Reasoning Inventory (SPR-I) is a novel classroom-based paper-and-pencil instrument that was developed to measure children’s conceptual advances across diverse components of scientific reasoning (experimentation, data interpretation, understanding the nature of science). The SPR-I comprises 19 items, and a reduced, 7-item version is available: the SPR-I(7). Both versions measure broad scientific-reasoning skills and they can be used for whole-class testing. The administration of the SPR-I(7) requires only 30 min, allowing for its use across diverse research settings and the economic assessment of large samples of primary-school students. This article reports on the first empirical test (IRT analysis) of the theoretical, conceptual-development model that guided the construction of the SPR-I. Both the SPR-I and the SPR-I(7) are available from the Supplementary Materials.
DOI: 10.6084/m9.figshare.12107325.v1
title: Westricketal._code_AttentiveMothers.R

description: R code for all analyses in "Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success" by Westrick et al.
DOI: 10.6084/m9.figshare.12107325.v3
title: Maternal Care Datasets & Code

description: R code and all associated datasets for all analyses in "Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success" by Westrick et al.
DOI: 10.6084/m9.figshare.12107325.v2
title: Maternal Care Datasets & Code

description: R code and all associated datasets for all analyses in "Attentive red squirrel mothers have faster-growing pups and higher lifetime reproductive success" by Westrick et al.
DOI: 10.6084/m9.figshare.12107100
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: <b>SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on PL<sup>pro</sup>. Because, we know the essential role of PL<sup>pro</sup> in SARS-CoV-2 life-cycle.</b> <b>Virtual Screening</b><b>PyRx is a Virtual Screening software for computational drug discovery that can be used to screen libraries of compounds against potential drug targets. Virtual molecular screening is used to dock small-molecule libraries to a macromolecule in order to find lead compounds with desired biological function. This in silico method is well known for its application in computer-aided drug design. PyRx is open-source software with an intuitive user interface that runs on all major computer operating systems.</b><b> </b> <b>This study suggests Notomycin and Coumermycin A1 for clinical and toxicological study to treat COVID-19 by inhibit SARS-CoV-2 papain-like protease (PL<sup>pro</sup>).</b><br>
DOI: 10.6084/m9.figshare.12107154
title: noahmp model outputs over CONUS over 1915-2018

description: This dataset includs the noah-mp outputs over CONUS (1/8 degree lat/lon) for 1915-2018.This dataset includes total soil moisture(SM) for three runs with different physical settings(baseline run(no dynamic vegetation or groundwater), dynamic vegetation run and groundwater run;Apr1 snow water equivalent for baseline run; water in aquifer in groundwater run; SPI6; SPEI6; PDSI<br><br>
DOI: 10.6084/m9.figshare.12107154.v1
title: noahmp model outputs over CONUS over 1915-2018

description: This dataset includs the noah-mp outputs over CONUS (1/8 degree lat/lon) for 1915-2018.This dataset includes total soil moisture(SM) for three runs with different physical settings(baseline run(no dynamic vegetation or groundwater), dynamic vegetation run and groundwater run;Apr1 snow water equivalent for baseline run; water in aquifer in groundwater run; SPI6; SPEI6; PDSI<br><br>
DOI: 10.6084/m9.figshare.12106926
title: BacPopGen_salmonella_newport_Typhimurium_data

description: Raw data for Salmonella Newport and Typhimurium analyses using our pipeline called BacPopGen.<br>
DOI: 10.6084/m9.figshare.12106926.v1
title: BacPopGen_salmonella_newport_Typhimurium_data

description: Raw data for Salmonella Newport and Typhimurium analyses using our pipeline called BacPopGen.<br>
DOI: 10.6084/m9.figshare.12107100.v1
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on SARS-CoV-2 papain-like protease (PLpro). Because, we know the essential role of PLpro in SARS-CoV-2 life-cycle.
DOI: 10.6084/m9.figshare.12107100.v2
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: This study suggest Coumermycin A1 for clinical and toxicological study to treat COVID-19 by inhibit SARS-CoV-2 papain-like protease (PLpro). <br>SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on PLpro. Because, we know the essential role of PLpro in SARS-CoV-2 life-cycle.<br>
DOI: 10.6084/m9.figshare.12107100.v3
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: This study suggest Notomycin and Coumermycin A1 for clinical and toxicological study to treat COVID-19 by inhibit SARS-CoV-2 papain-like protease (PLpro). <br>SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on PLpro. Because, we know the essential role of PLpro in SARS-CoV-2 life-cycle.<br>
DOI: 10.6084/m9.figshare.12105510
title: Supplement

description: <b>Supplement 1 and Supplement 2.</b> Impedance-pH monitoring in the diagnosis of gastroesophageal reflux disease in cystic fibrosis
DOI: 10.6084/m9.figshare.12105759
title: BMI-based Non-quadratic Controller Design for Polytopic-LPV Systems

description: <br> The supported data for Fig. 1 in paper "BMI-based Non-quadratic Controller Design for Polytopic-LPV Systems” which proves the superiority of the proposed BMI approach <br>
DOI: 10.6084/m9.figshare.12107100.v4
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: This study suggest Notomycin and Coumermycin A1 for clinical and toxicological study to treat COVID-19 by inhibit SARS-CoV-2 papain-like protease (PLpro). <br>SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on PLpro. Because, we know the essential role of PLpro in SARS-CoV-2 life-cycle.<br>
DOI: 10.6084/m9.figshare.12107100.v5
title: Molecular docking: Potential Inhibitors of SARS CoV-2 (PLpro) papain-like protease

description: <b>SARS-CoV-2 or COVID-19 pandemic have been rising continuously from the date of disease outbreak. Currently, there is no approved drugs and vaccine to treat this viral infection. In this scenario, there is a need to utilize the existing approved drugs to treat this disease. From this current molecular docking study started to test some of the drugs to know their inhibitory action on PL<sup>pro</sup>. Because, we know the essential role of PL<sup>pro</sup> in SARS-CoV-2 life-cycle.</b> <b>Virtual Screening</b><b>PyRx is a Virtual Screening software for computational drug discovery that can be used to screen libraries of compounds against potential drug targets. Virtual molecular screening is used to dock small-molecule libraries to a macromolecule in order to find lead compounds with desired biological function. This in silico method is well known for its application in computer-aided drug design. PyRx is open-source software with an intuitive user interface that runs on all major computer operating systems.</b><b> </b> <b>This study suggests Notomycin and Coumermycin A1 for clinical and toxicological study to treat COVID-19 by inhibit SARS-CoV-2 papain-like protease (PL<sup>pro</sup>).</b><br>
DOI: 10.6084/m9.figshare.12105759.v2
title: BMI-based Non-quadratic Controller Design for Polytopic-LPV Systems

description: <br> The supported data for Fig. 1 in paper "BMI-based Non-quadratic Controller Design for Polytopic-LPV Systems” which proves the superiority of the proposed BMI approach <br>