cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12050190.v1
title: Additional file 3 of Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

description: Additional file 3 : Supplementary Table S3. Multiple CPuORF sequence alignments.
DOI: 10.6084/m9.figshare.12050178
title: Additional file 1 of The A818–6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer

description: Additional file 1: Table S1. nCounter full transportome gene list. Table S2. List of the transportome genes according to IUPHAR-DB. Table S3. Transportome expression level in pancreatic tumour epithelium (TE) compared to normal epithelium (NE) from tissue microarray. Table S4. All differentially regulated genes in HS/ML cells according to the cell microarray. Table S5. PED enrichment of upregulated genes in Hollow spheres (HS) from the cell microarray. Table S6. PED enrichment of upregulated genes in monolayer (ML) from the cell microarray. Table S7. KEGG enrichment of upregulated HS genes in the cell microarray according to WebGestalt. Hollow sphere (HS) upregulated genes (WebGestalt), Gene Set Enrichment Analysis (GSEA) &gt; Kyoto Encyclopedia of Genes and Genomes (KEGG) or Reactome. Table S8. KEGG enrichment of upregulated ML genes in the cell microarray according to WebGestalt. Monolayer (ML) upregulated genes (WebGestalt) Gene Set Enrichment Analysis (GSEA) &gt; Kyoto Encyclopedia of Genes and Genomes (KEGG) or Reactome. Table S9. List of the differentially regulated transportome genes in the cell microarray.
DOI: 10.6084/m9.figshare.12050184
title: Additional file 2 of Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

description: Additional file 2 : Supplementary Table S2. Taxonomic range of sequence conservation of the CPuORFs.
DOI: 10.6084/m9.figshare.12050178.v1
title: Additional file 1 of The A818–6 system as an in-vitro model for studying the role of the transportome in pancreatic cancer

description: Additional file 1: Table S1. nCounter full transportome gene list. Table S2. List of the transportome genes according to IUPHAR-DB. Table S3. Transportome expression level in pancreatic tumour epithelium (TE) compared to normal epithelium (NE) from tissue microarray. Table S4. All differentially regulated genes in HS/ML cells according to the cell microarray. Table S5. PED enrichment of upregulated genes in Hollow spheres (HS) from the cell microarray. Table S6. PED enrichment of upregulated genes in monolayer (ML) from the cell microarray. Table S7. KEGG enrichment of upregulated HS genes in the cell microarray according to WebGestalt. Hollow sphere (HS) upregulated genes (WebGestalt), Gene Set Enrichment Analysis (GSEA) &gt; Kyoto Encyclopedia of Genes and Genomes (KEGG) or Reactome. Table S8. KEGG enrichment of upregulated ML genes in the cell microarray according to WebGestalt. Monolayer (ML) upregulated genes (WebGestalt) Gene Set Enrichment Analysis (GSEA) &gt; Kyoto Encyclopedia of Genes and Genomes (KEGG) or Reactome. Table S9. List of the differentially regulated transportome genes in the cell microarray.
DOI: 10.6084/m9.figshare.12050172
title: Additional file 1 of Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

description: Additional file 1 : Supplementary Table S1. CPuORFs extracted from A. thaliana, O. sativa, S. lycopersicum, P. trichocarpa and V. vinifera.
DOI: 10.6084/m9.figshare.12050184.v1
title: Additional file 2 of Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

description: Additional file 2 : Supplementary Table S2. Taxonomic range of sequence conservation of the CPuORFs.
DOI: 10.6084/m9.figshare.12050172.v1
title: Additional file 1 of Comprehensive genome-wide identification of angiosperm upstream ORFs with peptide sequences conserved in various taxonomic ranges using a novel pipeline, ESUCA

description: Additional file 1 : Supplementary Table S1. CPuORFs extracted from A. thaliana, O. sativa, S. lycopersicum, P. trichocarpa and V. vinifera.
DOI: 10.6084/m9.figshare.12050142
title: Additional file 1 of Perceptions of factors influencing the introduction and adoption of electronic immunization registries in Tanzania and Zambia: a mixed methods study

description: Additional file 1. Key Informant Interview Questions.
DOI: 10.6084/m9.figshare.12050142.v1
title: Additional file 1 of Perceptions of factors influencing the introduction and adoption of electronic immunization registries in Tanzania and Zambia: a mixed methods study

description: Additional file 1. Key Informant Interview Questions.
DOI: 10.6084/m9.figshare.12050064
title: Additional file 1 of Immunization with virus-like particles conjugated to CIDRα1 domain of Plasmodium falciparum erythrocyte membrane protein 1 induces inhibitory antibodies

description: Additional file 1. Raw data file. Data of IgG reactivity (MFI) and EPCAR binding (MFI) with and without presence of IgG given along with calculated level of inhition (%).
DOI: 10.6084/m9.figshare.12050064.v1
title: Additional file 1 of Immunization with virus-like particles conjugated to CIDRα1 domain of Plasmodium falciparum erythrocyte membrane protein 1 induces inhibitory antibodies

description: Additional file 1. Raw data file. Data of IgG reactivity (MFI) and EPCAR binding (MFI) with and without presence of IgG given along with calculated level of inhition (%).
DOI: 10.6084/m9.figshare.12050046
title: Additional file 3 of Anopheline bionomics, insecticide resistance and transnational dispersion in the context of controlling a possible recurrence of malaria transmission in Jaffna city in northern Sri Lanka

description: Additional file 3: Alignment S1. DNA sequence alignments of NaV region.
DOI: 10.6084/m9.figshare.12050046.v1
title: Additional file 3 of Anopheline bionomics, insecticide resistance and transnational dispersion in the context of controlling a possible recurrence of malaria transmission in Jaffna city in northern Sri Lanka

description: Additional file 3: Alignment S1. DNA sequence alignments of NaV region.
DOI: 10.6084/m9.figshare.12050013
title: Additional file 1 of The genome-wide landscape of C:G &gt; T:A polymorphism at the CpG contexts in the human population

description: Additional file 1: Table S1. Statistics of CpGs and CGIs in the human reference genome GRCh37. Table S2. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides according to their allele frequencies in the human population. Table S3. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides, methylation of which is ≥67%, in the protein coding sequences. Table S4. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides, methylation of which is ≥67%, in the protein coding sequences according to their allele frequencies in the human population. Table S5. The number of reported C &gt; T polymorphism positions at all the CpG dinucleotides in the protein coding sequences.
DOI: 10.6084/m9.figshare.12050013.v1
title: Additional file 1 of The genome-wide landscape of C:G &gt; T:A polymorphism at the CpG contexts in the human population

description: Additional file 1: Table S1. Statistics of CpGs and CGIs in the human reference genome GRCh37. Table S2. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides according to their allele frequencies in the human population. Table S3. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides, methylation of which is ≥67%, in the protein coding sequences. Table S4. The number of reported C &gt; T polymorphism positions at the CpG dinucleotides, methylation of which is ≥67%, in the protein coding sequences according to their allele frequencies in the human population. Table S5. The number of reported C &gt; T polymorphism positions at all the CpG dinucleotides in the protein coding sequences.
DOI: 10.6084/m9.figshare.12049518
title: Transcriptome profiling of the response of Antarctic midge Parochlus steinenii larvae to heat and cold stress

description: <i>Parochlus steinenii</i> is a species of winged midge found in the Antarctic Peninsula. To understand the mechanisms they use to adapt to cold environments and predict their responses to climate change, we investigate the transcriptome of <i>P. steinenii</i> larvae under heat and cold stresses. Here, we present the annotated genome sequence of <i>P. steinenii</i> with the transcriptome of both adults and larvae, and differentially expressed genes due to cold and heat stresses in larvae. A total of 12 757 genes were predicted, and gene set completeness was 95.7 % in the BUSCO analysis against Eukaryota <i>odb9</i>. Of the predicted genes, 7 851 were classified using Gene Ontology (GO), and genes differentially expressed more than 2-fold were selected. In larvae, under cold stress, 75 genes were up-regulated and 227 genes were down-regulated. In larvae, under heat stress at 12 °C and 20 °C, 37 genes were down-regulated, and three GO terms were statistically overrepresented at both condition.
DOI: 10.5281/zenodo.4000383
title: TweetBLM: A Hate Speech Dataset and Analysis of BlackLivesMatter-related Microblogs on Twitter

description: Collection of BLM related tweets and their corresponding labels of hate speech.
DOI: 10.6084/m9.figshare.12049518.v1
title: Transcriptome profiling of the response of Antarctic midge Parochlus steinenii larvae to heat and cold stress

description: <i>Parochlus steinenii</i> is a species of winged midge found in the Antarctic Peninsula. To understand the mechanisms they use to adapt to cold environments and predict their responses to climate change, we investigate the transcriptome of <i>P. steinenii</i> larvae under heat and cold stresses. Here, we present the annotated genome sequence of <i>P. steinenii</i> with the transcriptome of both adults and larvae, and differentially expressed genes due to cold and heat stresses in larvae. A total of 12 757 genes were predicted, and gene set completeness was 95.7 % in the BUSCO analysis against Eukaryota <i>odb9</i>. Of the predicted genes, 7 851 were classified using Gene Ontology (GO), and genes differentially expressed more than 2-fold were selected. In larvae, under cold stress, 75 genes were up-regulated and 227 genes were down-regulated. In larvae, under heat stress at 12 °C and 20 °C, 37 genes were down-regulated, and three GO terms were statistically overrepresented at both condition.
DOI: 10.6084/m9.figshare.12049458
title: Dong tea SSR data

description: There are 15 SSR primers amplified among 81 accessions include 79 Dong tea plant.
DOI: 10.6084/m9.figshare.12049458.v1
title: Dong tea SSR data

description: There are 15 SSR primers amplified among 81 accessions include 79 Dong tea plant.
DOI: 10.6084/m9.figshare.12049437
title: Dong tea cpDNA data.rar

description: Two hundred and forty three cpDNA sequences (matK, rbcL, trnH2-psbAF) amplified in 81 tea plants.
DOI: 10.6084/m9.figshare.12049437.v1
title: Dong tea cpDNA data.rar

description: Two hundred and forty three cpDNA sequences (matK, rbcL, trnH2-psbAF) amplified in 81 tea plants.
DOI: 10.25390/caryinstitute.12049275
title: Table S4. Rodent species in the Afrotropical ecozone, their zoonotic reservoir status, and study effort in monkeypox research

description: Table S4 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table lists all rodent species whose geographic ranges overlap the Afrotropical ecozone, their status as reservoirs for zoonotic diseases, their mean equilibrium prevalence values (generated by a system of differential equations describing transmission dynamics of pathogens similar to Monkeypox), and the study effort for each species as estimated by the number of hits in Web of Science resulting from a search on Latin binomials of each species and the additional term "monkeypox".
DOI: 10.25390/caryinstitute.12049275.v1
title: Table S4. Rodent species in the Afrotropical ecozone, their zoonotic reservoir status, and study effort in monkeypox research

description: Table S4 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table lists all rodent species whose geographic ranges overlap the Afrotropical ecozone, their status as reservoirs for zoonotic diseases, their mean equilibrium prevalence values (generated by a system of differential equations describing transmission dynamics of pathogens similar to Monkeypox), and the study effort for each species as estimated by the number of hits in Web of Science resulting from a search on Latin binomials of each species and the additional term "monkeypox".
DOI: 10.25390/caryinstitute.12049149
title: Table S3. Zoonotic pathogens that are directly or environmentally transmitted and their rodent reservoir species

description: Table S3 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table contains data on zoonotic pathogens that are environmentally and directly transmitted, and rodent species that are known carriers of each pathogen (confirmed or putative zoonotic reservoirs). <br>
DOI: 10.25390/caryinstitute.12049149.v1
title: Table S3. Zoonotic pathogens that are directly or environmentally transmitted and their rodent reservoir species

description: Table S3 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table contains data on zoonotic pathogens that are environmentally and directly transmitted, and rodent species that are known carriers of each pathogen (confirmed or putative zoonotic reservoirs). <br>
DOI: 10.6084/m9.figshare.12049137
title: Ipsi EGFP/Tables for analysis

description: Xenopus RGC axon branch dynamics <br>Processed branch dynamics data (additions/elongations/eliminations/retractions) compared for different visual stimulation conditions. EGFP-expressing axons.
DOI: 10.25390/caryinstitute.12049128
title: Table S2. Rodent traits, biogeography, and equilibrium prevalence values from a model of density dependent, directly transmitted diseases

description: Table S2 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table describes traits and biogeography of extant rodent species (taxonomy according to Wilson and Reeder 2005), as well as the equilibrium prevalence values calculated for each species according to a model describing the transmission dynamics of a density dependent, directly transmitted pathogen (described in the manuscript).
DOI: 10.6084/m9.figshare.12049137.v1
title: Ipsi EGFP/Tables for analysis

description: Xenopus RGC axon branch dynamics <br>Processed branch dynamics data (additions/elongations/eliminations/retractions) compared for different visual stimulation conditions. EGFP-expressing axons.
DOI: 10.25390/caryinstitute.12049119
title: Table S1. rodent-borne zoonotic pathogens and transmission modes

description: Table S1 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table describes currently known rodent-borne zoonoses and their transmission modes.<br>
DOI: 10.25390/caryinstitute.12049119.v1
title: Table S1. rodent-borne zoonotic pathogens and transmission modes

description: Table S1 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table describes currently known rodent-borne zoonoses and their transmission modes.<br>
DOI: 10.25390/caryinstitute.12049128.v1
title: Table S2. Rodent traits, biogeography, and equilibrium prevalence values from a model of density dependent, directly transmitted diseases

description: Table S2 from <i>Integrating data mining and transmission theory in the ecology of infectious diseases</i>, coauthored by Suzanne O'Regan, John Paul Schmidt, and John M. Drake.<br>This table describes traits and biogeography of extant rodent species (taxonomy according to Wilson and Reeder 2005), as well as the equilibrium prevalence values calculated for each species according to a model describing the transmission dynamics of a density dependent, directly transmitted pathogen (described in the manuscript).
DOI: 10.6084/m9.figshare.12049086
title: Formally described species woefully underrepresent phylogenetic diversity in the common lichen photobiont genus Trebouxia (Trebouxiophyceae, Chlorophyta): An impetus for developing an integrated taxonomy

description: <b>ITS Alignments</b>: <br>clade 'A' - MAFFT alignment = "A_ITS_24Oct2016_MAFFT.fas"clade 'A' GUIDANCE alignment w/ columns removed = "A_ITS_24Oct2016_columns95.fas"clade 'A' GUIDANCE alignment w/ residues removed = A_ITS_24Oct2016_residues95.fas.txt"clade 'C' MAFFT alignment = "ITS_C_24Oct2016_MAFFT.fas"clade 'C' GUIDANCE alignment w/ columns removed = "ITS_C_24Oct2016_columns94.fas"clade 'C' GUIDANCE alignment w/ residues removed = "ITS_C_24Oct2016_residue94.fas"clade 'I' MAFFT alignment = "ITS_I_24Oct2016v1_MAFFT.fas"clade 'I' GUIDANCE alignment w/ columns removed = "ITS_I_24Oct2016_columns95v1.fas"clade 'I' GUIDANCE alignment w/ residues removed = "ITS_I_24Oct2016_residues95v1.fas"clade 'S' MAFFT alignment = "ITS_S_24Oct2016_MAFFT.fas"clade 'S' GUIDANCE alignment w/ columns removed = "ITS_S_24Oct2016_columns95.fas"clade 'S' GUIDANCE alignment w/ residues removed = "ITS_S_24Oct2016_residues95.fas"<br><br><b>Concatenated alignments</b>all clades combined (n=870): ITS (GUIDANCE alignments w/ columns removed), rbcL. cox2 = "a_c_i_g_ITS_rbcL_cox2_02Nov2016_v1.nex"<br>reduced genus-wide dataset (n=399) to minimize missing data: ITS (GUIDANCE alignments w/ columns removed), rbcL. cox2 = "a_c_i_g_ITS_rbcL_cox2_reduced_10Nov2016.phy" <b><br></b>
DOI: 10.6084/m9.figshare.12049014
title: Codon of betacoronavirus

description: Codon of betacoronavirus <br><b>Accession ID: EPI_ISL_402129</b><br>https://www.gisaid.org/<br>ARULANANDAM, CHARLI DEEPAK (2020): Betacoronavirus (hCov) Sequence composition. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12048930.v1<br><br><br>
DOI: 10.6084/m9.figshare.12049002
title: Mosquito and Human .json output from MBITES computational experiments

description: This dataset includes human and mosquito output (as .json files) produced by the computational experiments described in the main text of the article "Vector bionomics and vectorial capacity as emergent properties of mosquito behaviors and ecology". These files can be used with the code provided at the GitHub repository https://github.com/dd-harp/MBITES/tree/v1.0 to reproduce the results and figured presented in the text.<br>
DOI: 10.6084/m9.figshare.12048930
title: Betacoronavirus (hCov) Sequence composition

description: <b>Accession ID: </b>EPI_ISL_402129<br>https://www.gisaid.org/<br>
DOI: 10.6084/m9.figshare.12049014.v1
title: Codon of betacoronavirus

description: Codon of betacoronavirus <br><b>Accession ID: EPI_ISL_402129</b><br>https://www.gisaid.org/<br>ARULANANDAM, CHARLI DEEPAK (2020): Betacoronavirus (hCov) Sequence composition. figshare. Dataset. https://doi.org/10.6084/m9.figshare.12048930.v1<br><br><br>
DOI: 10.6084/m9.figshare.12048888
title: Appendix S5.doc

description: Database of gut retention time (min) and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048891
title: Appendix S4.doc

description: Database of seed germination after gut passage (odds ratio) and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048894
title: Appendix S3.doc

description: Database of seed removal (number of seeds/visit) to the plants and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048894.v1
title: Appendix S3.doc

description: Database of seed removal (number of seeds/visit) to the plants and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048882
title: Appendix S2.doc

description: Database of frequency of visits (number of visits/h) to the plants and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048885
title: Appendix S1.docx

description: Publications used to obtain data on birds and plants along with the study location
DOI: 10.6084/m9.figshare.12048891.v1
title: Appendix S4.doc

description: Database of seed germination after gut passage (odds ratio) and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048885.v1
title: Appendix S1.docx

description: Publications used to obtain data on birds and plants along with the study location
DOI: 10.6084/m9.figshare.12048888.v1
title: Appendix S5.doc

description: Database of gut retention time (min) and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048882.v1
title: Appendix S2.doc

description: Database of frequency of visits (number of visits/h) to the plants and body mass of birds (g) together with life form, fruit type, number of seeds per fruit, and seed size (mm<sup>3</sup>) of plants
DOI: 10.6084/m9.figshare.12048648
title: Matriz SPSS Google Adwords Fabricas de trabajos

description: Data of the research project Reference: RTI2018-098314-B-I00 on contract cheating in Spain<br>
DOI: 10.6084/m9.figshare.12048648.v1
title: Matriz SPSS Google Adwords Fabricas de trabajos

description: Data of the research project Reference: RTI2018-098314-B-I00 on contract cheating in Spain<br>
DOI: 10.6084/m9.figshare.12048645
title: Table 1. Baseline characteristics of patients included in the study

description: Patient demographic, Paris Classification, abbreviated pediatric Crohn Disease Activity Index, extraintestinal manifestation, past therapies, surgeries, and reason for starting ustekinumab
DOI: 10.6084/m9.figshare.12048645.v1
title: Table 1. Baseline characteristics of patients included in the study

description: Patient demographic, Paris Classification, abbreviated pediatric Crohn Disease Activity Index, extraintestinal manifestation, past therapies, surgeries, and reason for starting ustekinumab