cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21019234.v1
title: Additional file 5 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 5: Table S3. StringTie Contrast IFNvsUN.
DOI: 10.6084/m9.figshare.21019237
title: Additional file 6 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 6: Table S4. StringTie assembly TE-exon intersection.
DOI: 10.6084/m9.figshare.21019237.v1
title: Additional file 6 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 6: Table S4. StringTie assembly TE-exon intersection.
DOI: 10.6084/m9.figshare.21019243
title: Additional file 7 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 7: Supplementary Data 2. Zisupton-EEF1A1 alignment.
DOI: 10.6084/m9.figshare.21019243.v1
title: Additional file 7 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 7: Supplementary Data 2. Zisupton-EEF1A1 alignment.
DOI: 10.6084/m9.figshare.21019246
title: Additional file 8 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 8: Supplementary Data 3. EEF1A1 sequence alignment across bat species.
DOI: 10.6084/m9.figshare.21019246.v1
title: Additional file 8 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 8: Supplementary Data 3. EEF1A1 sequence alignment across bat species.
DOI: 10.6084/m9.figshare.21019249
title: Additional file 9 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 9: Table S5. StringTie transcriptome vs TE reference sequences tblastx analysis.
DOI: 10.6084/m9.figshare.21019249.v1
title: Additional file 9 of Transcriptional dynamics of transposable elements in the type I IFN response in Myotis lucifugus cells

description: Additional file 9: Table S5. StringTie transcriptome vs TE reference sequences tblastx analysis.
DOI: 10.5281/zenodo.6607051
title: Reproduction package to "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes"

description: This is a reproduction package to the paper "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes", which will be published in Astronomy and Astrophysics. It contains the data and code to reproduce the figures in this paper.
DOI: 10.5281/zenodo.7056433
title: Reproduction package to "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes"

description: This is a reproduction package to the paper "Ultra-sensitive THz Microwave Kinetic Inductance Detectors for future space telescopes", published in Astronomy and Astrophysics, 665, A17 (2022). It contains the data and code to reproduce the figures in this paper. This version 2 includes minor changes to make figures and code consistent with the published version of the manuscript after review.
DOI: 10.6084/m9.figshare.12668813
title: All-filtered

description: short read genome assemblies for the BCCDC isolates
DOI: 10.6084/m9.figshare.12668813.v2
title: All-filtered

description: short read genome assemblies for the BCCDC isolates
DOI: 10.6084/m9.figshare.12668813.v1
title: All-filtered

description: short read genome assemblies for the BCCDC isolates
DOI: 10.14469/hpc/11124
title: Immune responses to COVID-19 saRNA and mRNA vaccination

description: Raw data for "Enhanced immune responses following heterologous vaccination with self-amplifying RNA and mRNA COVID-19 vaccines"
DOI: 10.15468/vgmfuu
title: Belgian Species List

description: This resource was created by publishing the backend database of the Belgian Species List website (www.species.be). This publishing work has been done by the Belgian Biodiversity Platform (http://www.biodiversity.be) in the framework of the "GBIF award for evaluating checklist publication format" during May 2011. Data extracted by Francis Strobbe on May 27th 2011. Abstract of the Belgian Species List project: Since almost a year now, people of all ages can access the Belgian Species List for an extensive overview of the biodiversity in Belgium. Animals, plants, fungi: you can make your way through a total of more than 32.000 species! The Belgian species list was set up by the RBINS – the research institution behind the Museum of Natural Sciences – in cooperation with different Belgian and international institutions and organizations. The purpose of the species list is to become the online reference in naming and occurrence of species in Belgium, easy to consult in just one website that centralizes and standardizes the information. For every species that's been described, information is given on among other things the conservation status, the distribution, the habitat and much more. More and more species index cards are fitted with pictures and interesting links. The website is aimed at a broad audience: researchers, decision makers, students, journalists, nature conversationists and all nature lovers. Want to know more? Log on to www.species.be!
DOI: 10.5281/zenodo.7052113
title: Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq

description: Hundreds of loci in human genomes have alleles that are methylated differentially according to their parent of origin. These imprinted loci generally show little variation across tissues, individuals, and populations. We show that such loci can be used to distinguish the maternal and paternal homologs for all autosomes, without the need for the parental DNA. We integrate methylation-detecting nanopore sequencing with the long-range phase information in Strand-seq data to determine the parent of origin of chromosome-length haplotypes for both DNA sequence and DNA methylation in five trios with diverse genetic backgrounds.
DOI: 10.5281/zenodo.7052112
title: Parent-of-origin detection and chromosome-scale haplotyping using long-read DNA methylation sequencing and Strand-seq

description: Hundreds of loci in human genomes have alleles that are methylated differentially according to their parent of origin. These imprinted loci generally show little variation across tissues, individuals, and populations. We show that such loci can be used to distinguish the maternal and paternal homologs for all autosomes, without the need for the parental DNA. We integrate methylation-detecting nanopore sequencing with the long-range phase information in Strand-seq data to determine the parent of origin of chromosome-length haplotypes for both DNA sequence and DNA methylation in five trios with diverse genetic backgrounds.
DOI: 10.17632/6vsbk97scn.1
title: Whittington, King, and Cingolani 2022

description: This dataset includes author-level metrics for over 1.2 anonymized author profiles which have been used for the analysis proposed in our article titled "Structure, Status, and Span: Global Gender Differences in Disciplinary Authorship Networks Across a Global Landscape". The set of metrics are meant to measure the structure, status and span of the collaborative research activity of women and men authors active in four regions and four fields during the period 2009-2013.
DOI: 10.5281/zenodo.7041592
title: WorldFishCenter/cambodian-fish-refuges 1.0

description: <strong>Retention of aquatic biodiversity in a mixed-use agroecosystem in Cambodia</strong> <em>This repository contains data and code to analyse catch and biodiversity patterns from the Community Fish Refuges in Rice field Fisheries.</em> Inland fisheries of the southern Mekong basin are some of the largest in the world and are crucial to household food and nutrition security throughout the region. These fisheries rely on a bimodal seasonal inundation of monsoon rains that reconnect isolated water bodies and their fish populations. However, water infrastructure developments and climate change represent significant threats to the reliability and effect of this annual flood pulse, driving negative impacts on aquatic biodiversity and biomass. Augmentation and management of natural and artificial dry season habitats as community fish refuges (CFRs) have been trialled in Cambodia since 2005 as a way of maintaining biomass and biodiversity of wild aquatic species. Large spatio-temporal variations in the biodiversity and biomass of assemblages are expected in flood pulse systems, however there is still little understanding of the drivers of this variation with which to guide further development interventions around rice field fisheries conservation and livelihoods. Using quarterly fisheries independent catch surveys and biological monitoring at 40 CFRs in Cambodia from 2012 to 2015, we evaluate the effectiveness of CFRs at retaining biomass and biodiversity through the dry season to guide development, conservation and fisheries strategy.
DOI: 10.5281/zenodo.7041591
title: WorldFishCenter/cambodian-fish-refuges 1.0

description: <strong>Retention of aquatic biodiversity in a mixed-use agroecosystem in Cambodia</strong> <em>This repository contains data and code to analyse catch and biodiversity patterns from the Community Fish Refuges in Rice field Fisheries.</em> Inland fisheries of the southern Mekong basin are some of the largest in the world and are crucial to household food and nutrition security throughout the region. These fisheries rely on a bimodal seasonal inundation of monsoon rains that reconnect isolated water bodies and their fish populations. However, water infrastructure developments and climate change represent significant threats to the reliability and effect of this annual flood pulse, driving negative impacts on aquatic biodiversity and biomass. Augmentation and management of natural and artificial dry season habitats as community fish refuges (CFRs) have been trialled in Cambodia since 2005 as a way of maintaining biomass and biodiversity of wild aquatic species. Large spatio-temporal variations in the biodiversity and biomass of assemblages are expected in flood pulse systems, however there is still little understanding of the drivers of this variation with which to guide further development interventions around rice field fisheries conservation and livelihoods. Using quarterly fisheries independent catch surveys and biological monitoring at 40 CFRs in Cambodia from 2012 to 2015, we evaluate the effectiveness of CFRs at retaining biomass and biodiversity through the dry season to guide development, conservation and fisheries strategy.
DOI: 10.5525/gla.researchdata.1317
title: Audience Negotiations of BBC and Al Jazeera News coverage of the Israel Palestine conflict

description: The dataset contains the data that formed the above named PhD thesis
DOI: 10.34740/kaggle/dsv/4171712
title: AutoXGB
DOI: 10.5281/zenodo.7010119
title: Etidocaine binding to POPC membrane, CHARMM36-SwissParam, 280 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ" here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded
DOI: 10.5281/zenodo.7010118
title: Etidocaine binding to POPC membrane, CHARMM36-SwissParam, 280 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ" here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded
DOI: 10.5281/zenodo.7010152
title: Etidocaine binding to POPC membrane, CHARMM36-SwissParam, 418 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ" here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded
DOI: 10.5281/zenodo.7010151
title: Etidocaine binding to POPC membrane, CHARMM36-SwissParam, 418 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ" here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded
DOI: 10.5281/zenodo.6988344
title: Etidocaine binding to POPC membrane, CHARMM36-ParamChem, 34 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ", here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded FILES:<br> tpr:<br> GMX_VERSION: gromacs version used for "gmx grompp" creation of *.tpr file at local computer log:<br> GMX_VERSION: gromacs version used for "gmx mdrun" at cluster and read out from *.log file
DOI: 10.5281/zenodo.6988343
title: Etidocaine binding to POPC membrane, CHARMM36-ParamChem, 34 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ", here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded FILES:<br> tpr:<br> GMX_VERSION: gromacs version used for "gmx grompp" creation of *.tpr file at local computer log:<br> GMX_VERSION: gromacs version used for "gmx mdrun" at cluster and read out from *.log file
DOI: 10.5281/zenodo.6975484
title: Deficiency of GRN, a frontotemporal dementia gene, results in gangliosidosis

description: Haploinsufficiency of <em>GRN</em> causes frontotemporal dementia (FTD). The <em>GRN</em> locus produces progranulin (PGRN), which is cleaved to lysosomal granulin polypeptides. The function of lysosomal granulins and why their absence causes neurodegeneration are unclear. Here we discover that PGRN-deficient human cells and murine brains, as well as human frontal lobes from <em>GRN</em>-mutation FTD patients have increased levels of gangliosides, glycosphingolipids that contain sialic acid. In these cells and tissues, levels of lysosomal enzymes that catabolize gangliosides were normal, but levels of bis(monoacylglycero)phosphates (BMP), lipids required for ganglioside catabolism, were reduced with PGRN deficiency. Our findings indicate that granulins are required to maintain BMP levels to support ganglioside catabolism, and that PGRN deficiency in lysosomes leads to gangliosidosis. Lysosomal ganglioside accumulation may contribute to neuroinflammation and neurodegeneration susceptibility observed in FTD due to PGRN deficiency and other neurodegenerative diseases.
DOI: 10.5281/zenodo.6975483
title: Deficiency of GRN, a frontotemporal dementia gene, results in gangliosidosis

description: Haploinsufficiency of <em>GRN</em> causes frontotemporal dementia (FTD). The <em>GRN</em> locus produces progranulin (PGRN), which is cleaved to lysosomal granulin polypeptides. The function of lysosomal granulins and why their absence causes neurodegeneration are unclear. Here we discover that PGRN-deficient human cells and murine brains, as well as human frontal lobes from <em>GRN</em>-mutation FTD patients have increased levels of gangliosides, glycosphingolipids that contain sialic acid. In these cells and tissues, levels of lysosomal enzymes that catabolize gangliosides were normal, but levels of bis(monoacylglycero)phosphates (BMP), lipids required for ganglioside catabolism, were reduced with PGRN deficiency. Our findings indicate that granulins are required to maintain BMP levels to support ganglioside catabolism, and that PGRN deficiency in lysosomes leads to gangliosidosis. Lysosomal ganglioside accumulation may contribute to neuroinflammation and neurodegeneration susceptibility observed in FTD due to PGRN deficiency and other neurodegenerative diseases.
DOI: 10.34644/laudatio-dev-xnu19iiba2xddnucxfx-
title: Wiedererzählen im Norden. Digitale Analyse weltlicher Erzählungen in niederdeutschen Inkunabeln
DOI: 10.5281/zenodo.7040241
title: Endogenous rhythmic growth modulates priming of antiherbivore defenses in subsequently formed new leaves of oak trees

description: Priming of plant defenses provides increased plant protection against herbivores and reduces the allocation costs of defense. Defense priming in woody plants remains obscure, in particular due to plant development traits such as the endogenous rhythmic growth displayed by oaks (<em>Quercus robur</em>). By using bioassays with oak microcuttings, and by combining transcriptomic and metabolomic analyses, we investigated how leaf herbivory by <em>Lymantria dispar</em> and root inoculation with the ectomycorrhizal fungus <em>Piloderma croceum</em> prime oak defenses. We further investigated how defense priming is modulated by rhythmic growth of the oaks. A first herbivory challenge in oak leaves primed newly grown leaves for an enhanced induction of jamonic acid (JA)-related direct defenses, or enhanced emission of volatiles, depending on the specific growth stage at which the plants where challenged. Root inoculation with <em>Piloderma</em> abolished the enhanced induction of JA-related defenses and volatile emission. Our results indicate that a first herbivore attack primes direct and indirect defenses of newly formed oak leaves, and that the specific display of defense priming is modulated by rhythmic growth. Our results further show that the priming memory in oaks can be transmitted to the next growth cycle - even to the leaves of the new shoot unit.
DOI: 10.5281/zenodo.7040240
title: Endogenous rhythmic growth modulates priming of antiherbivore defenses in subsequently formed new leaves of oak trees

description: Priming of plant defenses provides increased plant protection against herbivores and reduces the allocation costs of defense. Defense priming in woody plants remains obscure, in particular due to plant development traits such as the endogenous rhythmic growth displayed by oaks (<em>Quercus robur</em>). By using bioassays with oak microcuttings, and by combining transcriptomic and metabolomic analyses, we investigated how leaf herbivory by <em>Lymantria dispar</em> and root inoculation with the ectomycorrhizal fungus <em>Piloderma croceum</em> prime oak defenses. We further investigated how defense priming is modulated by rhythmic growth of the oaks. A first herbivory challenge in oak leaves primed newly grown leaves for an enhanced induction of jamonic acid (JA)-related direct defenses, or enhanced emission of volatiles, depending on the specific growth stage at which the plants where challenged. Root inoculation with <em>Piloderma</em> abolished the enhanced induction of JA-related defenses and volatile emission. Our results indicate that a first herbivore attack primes direct and indirect defenses of newly formed oak leaves, and that the specific display of defense priming is modulated by rhythmic growth. Our results further show that the priming memory in oaks can be transmitted to the next growth cycle - even to the leaves of the new shoot unit.
DOI: 10.6084/m9.figshare.21021334
title: Measure Table

description: Measure items in studies 2, 3a, and 3b in "Hate the Wait? How Social Inferences Can Cause Customers Who Wait Longer to Buy More".
DOI: 10.6084/m9.figshare.21021334.v1
title: Measure Table

description: Measure items in studies 2, 3a, and 3b in "Hate the Wait? How Social Inferences Can Cause Customers Who Wait Longer to Buy More".
DOI: 10.6084/m9.figshare.21019954
title: Exp2-Data.sav

description: Data of Study 2 in the paper "Hate the Wait? How Social Inferences Can Cause Customers Who Wait Longer to Buy More".
DOI: 10.6084/m9.figshare.21019954.v1
title: Exp2-Data.sav

description: Data of Study 2 in the paper "Hate the Wait? How Social Inferences Can Cause Customers Who Wait Longer to Buy More".
DOI: 10.25442/hku.20477931
title: Supporting data for "Comprehensive toxicological evaluation of novel anti-hypertensive small molecule KSD179019".

description: The data are results obtained from the in-vitro and in-vivo toxicological studies conducted for the safety evaluation of novel anti-hypertensive small molecule KSD179019. The in-vitro study includes MTT and Ames test to evaluate weather the drug is carcinogenic to cells and bacteria. Further, the in-vivo data is from acute, sub-chronic and chronic toxicity study to identify the maximum tolerable dose levels without causing any toxic effect. <br> The data set contains Images of animals necropsy, haematology and histology. raw data obtained from the spectophotometer after performing the biochemical assays. prism graphpad files obtrained after interpreting the results .
DOI: 10.25442/hku.20477931.v1
title: Supporting data for "Comprehensive toxicological evaluation of novel anti-hypertensive small molecule KSD179019".

description: The data are results obtained from the in-vitro and in-vivo toxicological studies conducted for the safety evaluation of novel anti-hypertensive small molecule KSD179019. The in-vitro study includes MTT and Ames test to evaluate weather the drug is carcinogenic to cells and bacteria. Further, the in-vivo data is from acute, sub-chronic and chronic toxicity study to identify the maximum tolerable dose levels without causing any toxic effect. <br> The data set contains Images of animals necropsy, haematology and histology. raw data obtained from the spectophotometer after performing the biochemical assays. prism graphpad files obtrained after interpreting the results .
DOI: 10.5281/zenodo.7010166
title: Etidocaine binding to POPC membrane, CHARMM36-ParamChem, 69 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ", here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded FILES:<br> tpr:<br> GMX_VERSION: gromacs version used for "gmx grompp" creation of *.tpr file at local computer log:<br> GMX_VERSION: gromacs version used for "gmx mdrun" at cluster and read out from *.log file
DOI: 10.5281/zenodo.7010165
title: Etidocaine binding to POPC membrane, CHARMM36-ParamChem, 69 mM, 298 K

description: System info in README.yaml, including basic analysis - headgroup OP, averaged APL and repead distance, analysis performed only from eqilibrated part of the simulation, marked as "BINDINGEQ", here: FILES:<br> xtc:<br> NAME: [name]<br> SIZE: [MB]<br> MODIFIED: [yyyy-mm-dd time]<br> LENGTH: [ps]<br> SAVING_FREQUENCY: [ps]<br> BEGIN: [ps] - how much of the simulation was simulated before and is excluded FILES:<br> tpr:<br> GMX_VERSION: gromacs version used for "gmx grompp" creation of *.tpr file at local computer log:<br> GMX_VERSION: gromacs version used for "gmx mdrun" at cluster and read out from *.log file
DOI: 10.34740/kaggle/dsv/4171703
title: LUFlow Network Intrusion Detection Data Set