cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11396787
title: Raw data and scripts from "Optimization and Visualization Tools for Situational Awareness in Highly Renewable Power Systems"

description: Just the makings of this paper, for IEEE ENERGYCON 2020<br>
DOI: 10.6084/m9.figshare.11396787.v1
title: Raw data and scripts from "Optimization and Visualization Tools for Situational Awareness in Highly Renewable Power Systems"

description: Just the makings of this paper, for IEEE ENERGYCON 2020<br>
DOI: 10.6084/m9.figshare.11396745
title: Supplementary Material for: Long-Term Follow-Up Changes of Central Choroidal Thickness Thinning after Repeated Anti-VEGF Therapy Injections in Patients with Central Retinal Vein Occlusion-Related Macular Edema with Systemic Hypertension

description: <b><i>Purpose:</i></b> We investigated the thinning of central choroidal thickness (CCT) following intravitreal injections of anti-vascular endothelial growth factor (anti-VEGF) drugs to treat central retinal vein occlusion (CRVO)-related macular edema in patients with and without systemic hypertension (HT) to assess the influence of repeated anti-VEGF therapy and HT on the choroid in CRVO eyes. <b><i>Methods:</i></b> We conducted a retrospective study involving 27 patients with CRVO-related macular edema from January 2014 to July 2017, with follow-ups exceeding 18 months. Visual acuity (VA), central retinal thickness (CRT), and CCT were evaluated before and after initial anti-VEGF drug treatment during follow-up. <b><i>Results:</i></b> The mean follow-up period was 35.2 months. Seventeen (63.0%) patients had HT. At 1 month after treatment, VA had improved in 21 (77.8%) patients, and CRT had decreased in 25 (92.6%). At the final visit, 22 (81.5%) showed improved VA, 19 (70.4%) had resolved macular edema, and the CCT had gradually become thinner with additional drug injections in all the patients. Furthermore, the mean CCT in HT patients (209.0 µm) was significantly lower than in non-HT patients (256.1 µm), and the mean injections were 7.8 and 5.3, respectively (<i>p</i> = 0.2067). <b><i>Conclusion:</i></b> The CCTs were thinner in eyes with HT than in eyes without HT both before and after the repeated anti-VEGF injections.
DOI: 10.6084/m9.figshare.11396652
title: Bugula neritina genome resources

description: Draft genome assembly and annotation for <i>Bugula neritina</i> (Bryozoa), natural source of bioactive compounds.
DOI: 10.6084/m9.figshare.11396652.v1
title: Bugula neritina genome resources

description: Draft genome assembly and annotation for <i>Bugula neritina</i> (Bryozoa), natural source of bioactive compounds.
DOI: 10.5522/04/11396565
title: Two-cohort (Cambridge and EUGENDA) GWAS meta-analyses of FHR-4 and FH levels

description: The data repository consists of four files of summary statistics from the two-cohort (Cambridge and EUGENDA) GWAS meta-analyses of FH and FHR-4 levels: <br><b>METAANALYSIS_FH_ALL-adjAMD.txt </b>(tab-separated values file; size:<b> </b>448Mb)<b>METAANALYSIS_FH_controls.txt </b>(tab-separated values file; size:<b> </b>448Mb) <b>METAANALYSIS_FHR4_ALL-adjAMD.txt </b>(tab-separated values file; size:<b> </b>432Mb)<br> <b>METAANALYSIS_FHR4_controls.txt </b>(tab-separated values file; size:<b> </b>432Mb)<b><br></b>The single-cohort GWASs were carried out using EPACTS software available at http://genome.sph.umich.edu/wiki/EPACTS; effect size estimates and standard errors of single variants seen in both cohorts were subsequently combined in a fixed-effect meta-analysis using METAL software available at http://csg.sph.umich.edu/abecasis/metal/download/.<br>More details are provided in the <b>Readme.pdf </b>file.
DOI: 10.5522/04/11396565.v1
title: Two-cohort (Cambridge and EUGENDA) GWAS meta-analyses of FHR-4 and FH levels

description: The data repository consists of four files of summary statistics from the two-cohort (Cambridge and EUGENDA) GWAS meta-analyses of FH and FHR-4 levels: <br><b>METAANALYSIS_FH_ALL-adjAMD.txt </b>(tab-separated values file; size:<b> </b>448Mb)<b>METAANALYSIS_FH_controls.txt </b>(tab-separated values file; size:<b> </b>448Mb) <b>METAANALYSIS_FHR4_ALL-adjAMD.txt </b>(tab-separated values file; size:<b> </b>432Mb)<br> <b>METAANALYSIS_FHR4_controls.txt </b>(tab-separated values file; size:<b> </b>432Mb)<b><br></b>The single-cohort GWASs were carried out using EPACTS software available at http://genome.sph.umich.edu/wiki/EPACTS; effect size estimates and standard errors of single variants seen in both cohorts were subsequently combined in a fixed-effect meta-analysis using METAL software available at http://csg.sph.umich.edu/abecasis/metal/download/.<br>More details are provided in the <b>Readme.pdf </b>file.
DOI: 10.6084/m9.figshare.11396478
title: Spatiotemporal mapping of RNA editing in the developing mouse brain using in situ sequencing reveals regional and cell-type-specific regulation

description: This dataset contains raw data for the study "Spatiotemporal mapping of RNA editing in the developing mouse brain using <i>in situ</i> sequencing reveals regional and cell-type-specific regulation".<br>Included data:<br>* ...details.csv filesThese files contains positional data for each detected transcript for each replicate.<br>* ...SingleCell.csv filesContains positional data for the segmented cells and their assigned transcript reads for each replicate.<br>* ...polygon_coordinates.csv filesContains the coordinates for the selected regions of interest (ROIs) for each replicate. These coordinates can be used to extract read and cell data for the selected ROIs.<br>* .tif or .jpg filesStitched DAPI images for full coronal brain sections.<br>* Data information.xlsx Contains information about ROI selection and image scale for the included replicates.
DOI: 10.6084/m9.figshare.11396424
title: Sequencing data

description: Sequencing data of transcriptome
DOI: 10.6084/m9.figshare.11396424.v1
title: Sequencing data

description: Sequencing data of transcriptome
DOI: 10.6084/m9.figshare.11396469.v1
title: Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite

description: Supporting Information for the manuscript titled<br><i>Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite</i><i><br></i><i>Contents:<br></i><br><b>Supplementary figure 1</b> Typical morphologies of zircon in the three populations investigated. Numbers correspond to those in Table 3. The grains are about 70-150 micron long.<br><b>Supplementary figure 2</b> N-MORB (a,d,g,j,m,p); with emphasis on LILE (b,e,h,k,n,q) and chondrite (c,f,i,l,o,r) normalized spidergram for volcanic rocks of Andaman ophiolite.<br><b>Supplementary figure 3</b> (a,b,c,d) primitive mantle; (e,f,g,h) chondrite normalized spidergram for clinopyroxene trace element concentration of forearc peridotites from literatures. (i,j) Domain of forearc peridotite with clinopyroxene data from Daito ridge (Morishita et al. 2018b). Clinopyroxene trace element pattern of Rutland Island peridotite is also shown.<br><b>Supplementary figure 4</b> (a) AFM (Irvine and Baragar, 1971) plot and trace element-based alkalinity test diagram (Ross and Bédard, 2009) (b) Th/Yb-Zr/Y; (c) Y-Zr; (d) Yb-La, (e) Yb-Th for volcanic rocks of Andaman ophiolite<br><b>Supplementary Table 1. </b>Analyses for blanks, replicates and standards used for bulk rock analysis of volcanic rocks<b><br></b><b>Supplementary Table 2. </b>Compilation of the available bulk rock geochemical data of volcanic rocks from Andaman and Nicobar Islands (including the data obtained in the present study)<br>
DOI: 10.6084/m9.figshare.11396304
title: Familiarity and Recollection Item Repetition

description: This data set contains data of 5-, 7-, and 11-year-olds' familiarity and recollection parameters as a function of item repetition and response time limit<br>
DOI: 10.6084/m9.figshare.11396304.v1
title: Familiarity and Recollection Item Repetition

description: This data set contains data of 5-, 7-, and 11-year-olds' familiarity and recollection parameters as a function of item repetition and response time limit<br>
DOI: 10.6084/m9.figshare.11396469.v2
title: Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite

description: Data and Supporting Information for the manuscript titled<br><i>Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite</i><i><br></i><i>Contents: </i><b><br></b><b>Table captions (Data and supporting information)<br><br></b><b>Table 1.</b> Geographic location and petrographic summary of the studied samples of Andaman ophiolites<br><b>Table 2.</b> Bulk rock geochemistry of selected samples of volcanic rocks from Andaman ophiolites<br><b>Table 3.</b> U-Pb data for zircon from Andaman samples<br><b>Supplementary Table 1.</b> Analyses for blanks, replicates and standards used for bulk rock analysis of volcanic rocks<br><b>Supplementary Table 2.</b> Compilation of the available bulk rock geochemical data of volcanic rocks from Andaman and Nicobar Islands (including the data obtained in the present study)<i><b><br></b></i><b>Figure captions (Supporting information)<br><br></b><b>Supplementary figure 1 </b>Typical morphologies of zircon in the three populations investigated. Numbers correspond to those in <b>Table 3</b>. The grains are about 70-150 micron long.<br><br><b>Supplementary figure 2</b> N-MORB (a,d,g,j,m,p); with emphasis on LILE (b,e,h,k,n,q) and chondrite (c,f,i,l,o,r) normalized spidergram for volcanic rocks of Andaman ophiolite.<br><br><b>Supplementary figure 3</b> (a,b,c,d) primitive mantle; (e,f,g,h) chondrite normalized spidergram for clinopyroxene trace element concentration of forearc peridotites from literatures. (i,j) Domain of forearc peridotite with clinopyroxene data from Daito ridge (Morishita et al. 2018b). Clinopyroxene trace element pattern of Rutland Island peridotite is also shown.<br><b><br></b><b>Supplementary figure 4</b> (a) AFM (Irvine and Baragar, 1971) plot and trace element-based alkalinity test diagram (Ross and Bédard, 2009) (b) Th/Yb-Zr/Y; (c) Y-Zr; (d) Yb-La, (e) Yb-Th for volcanic rocks of Andaman ophiolite<i><br></i><i><b>Note:</b></i><i><b><br></b></i><i>References in supporting information are cited in the main text and included in the reference list of the main paper.</i><i><br></i><i>All data including supporting information for the manuscript are available at Figshare https://doi.org/10.6084/m9.figshare.11396469.v1</i><br>
DOI: 10.6084/m9.figshare.11396469.v3
title: Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite

description: Data and Supporting Information for the manuscript titled<br><i>Clues to Cretaceous subduction initiation in South-East Asia - A geochronological and geochemical perspective from the Andaman Ophiolite</i><i><br></i><i>Contents: </i><b><br></b><b>Table captions (Data and supporting information)<br><br></b><b>Table 1.</b> Geographic location and petrographic summary of the studied samples of Andaman ophiolites<br><b>Table 2.</b> Bulk rock geochemistry of selected samples of volcanic rocks from Andaman ophiolites<br><b>Table 3.</b> U-Pb data for zircon from Andaman samples<br><b>Supplementary Table 1.</b> Analyses for blanks, replicates and standards used for bulk rock analysis of volcanic rocks<br><b>Supplementary Table 2.</b> Compilation of the available bulk rock geochemical data of volcanic rocks from Andaman and Nicobar Islands (including the data obtained in the present study)<i><b><br></b></i><b>Figure captions (Supporting information)<br><br></b><b>Supplementary figure 1 </b>Typical morphologies of zircon in the three populations investigated. Numbers correspond to those in <b>Table 3</b>. The grains are about 70-150 micron long.<br><br><b>Supplementary figure 2</b> N-MORB (a,d,g,j,m,p); with emphasis on LILE (b,e,h,k,n,q) and chondrite (c,f,i,l,o,r) normalized spidergram for volcanic rocks of Andaman ophiolite.<br><br><b>Supplementary figure 3</b> (a,b,c,d) primitive mantle; (e,f,g,h) chondrite normalized spidergram for clinopyroxene trace element concentration of forearc peridotites from literatures. (i,j) Domain of forearc peridotite with clinopyroxene data from Daito ridge (Morishita et al. 2018b). Clinopyroxene trace element pattern of Rutland Island peridotite is also shown.<br><b><br></b><b>Supplementary figure 4</b> (a) AFM (Irvine and Baragar, 1971) plot and trace element-based alkalinity test diagram (Ross and Bédard, 2009) (b) Th/Yb-Zr/Y; (c) Y-Zr; (d) Yb-La, (e) Yb-Th for volcanic rocks of Andaman ophiolite<i><br></i><i><b>Note:</b></i><i><b><br></b></i><i>References in supporting information are cited in the main text and included in the reference list of the main paper.</i><i><br></i><i>All data including supporting information for the manuscript are available at Figshare https://doi.org/10.6084/m9.figshare.11396469.v3</i><br>
DOI: 10.6084/m9.figshare.11396223
title: Supplementary Material for: High Metabolic Tumour Volume on 18-Fluorodeoxyglucose Positron Emission Tomography Predicts Poor Survival from Neuroendocrine Neoplasms

description: <b><i>Introduction:</i></b> 18-Fluorodeoxyglucose (<sup>18</sup>F-FDG) positron emission tomography (PET) avidity in neuroendocrine neoplasms (NENs) has been associated with higher-grade disease. <sup>18</sup>F-FDG avidity and high SUV<sub>max</sub> have been demonstrated to predict poor outcome. Quantitative metrics of <sup>18</sup>F-FDG PET, specifically metabolic tumour volume (MTV) and total lesion glycolysis (TLG), have been shown to be prognostic factors in other malignancies, but these have not been investigated to date in NENs. <b><i>Methods:</i></b> Patients with NEN undergoing <sup>18</sup>F-FDG at Royal North Shore Hospital from 2012 to 2018 were included. Images were analysed with automated segmentation (SUV cut-off of 4) followed by contour verification by a nuclear medicine physician and manual segmentation where required. Variables collected included patient age, histological grade, MTV, TLG, and SUV<sub>max</sub>/SUV<sub>mean</sub>. The primary outcome was overall survival (OS), and the secondary outcome was progression-free survival (PFS). Univariate (UV) and multivariate (MV) analyses were performed for OS and PFS for MTV and TLG separately. For UV analysis, the median MTV and TLG were used to dichotomise the cohort. MTV/TLG for NENs of different histological grade were compared using ANOVA. <b><i>Results:</i></b> One hundred and ninety patients were included (median age 63.5, 49% female). Primary site: 42% small bowel, 32% pancreas, 15% other gastrointestinal, 6% lung, 6% other. Grade for gastroenteropancreatic NENs and bronchial NEN: G1/typical carcinoid 37%, G2/atypical carcinoid 40%, G3/large-cell/small-cell neuroendocrine carcinoma 16%, unknown 8%. Median MTV was 4.83 mL (range 0–3,161 mL) and median TLG was 29.22. Patients with high MTV had worse median OS compared to those with low MTV (29.7 months vs. not reached, HR 4.1, 95% CI 2.25–7.49, <i>p</i> &lt; 0.00001). Considered as a continuous variable, MTV predicted for poorer OS on UV (<i>p</i> &lt; 0.00001) and MV (<i>p</i> = 0.003) analyses. Whilst histological grade was significant on both UV and MV, SUV<sub>max</sub> was significant on UV (<i>p</i> &lt; 0.00001) but not MV (<i>p</i> = 0.76). Tumours of higher grade had higher MTV (mean MTV – G1: 39.6 mL, G2: 107 mL, G3: 337 mL; <i>p</i> = 0.0001 by ANOVA). <b><i>Conclusions:</i></b> Quantitative analysis of <sup>18</sup>F-FDG PET in NEN is feasible. High MTV/TLG are predictors of poor prognosis in NEN. Further analyses are underway to investigate a larger cohort of NEN patients.
DOI: 10.6084/m9.figshare.11396469.v4
title: From back-arc to forearc: a geochemical and geochronological record of arc polarity reversal from the Andaman Ophiolite, SE Asia

description: Data and Supporting Information for the manuscript titled<br><i>From back-arc to forearc: a geochemical and geochronological record of arc polarity reversal from the Andaman Ophiolite, SE Asia</i><br><i><br></i><i>Contents: </i><b><br></b><b>Table captions (Data and supporting information)<br><br></b><b>Table 1.</b> Geographic location and petrographic summary of the studied samples of Andaman ophiolites<br><b>Table 2.</b> Bulk rock geochemistry of selected samples of volcanic rocks from Andaman ophiolites<br><b>Table 3.</b> U-Pb data for zircon from Andaman samples<br><b>Supplementary Table 1.</b> Analyses for blanks, replicates and standards used for bulk rock analysis of volcanic rocks<br><b>Supplementary Table 2.</b> Compilation of the available bulk rock geochemical data of volcanic rocks from Andaman and Nicobar Islands (including the data obtained in the present study)<i><b><br></b></i><b>Figure captions (Supporting information)<br><br></b><b>Supplementary figure 1 </b>Typical morphologies of zircon in the three populations investigated. Numbers correspond to those in <b>Table 3</b>. The grains are about 70-150 micron long.<br><br><b>Supplementary figure 2</b> N-MORB (a,d,g,j,m,p); with emphasis on LILE (b,e,h,k,n,q) and chondrite (c,f,i,l,o,r) normalized spidergram for volcanic rocks of Andaman ophiolite.<br><br><b>Supplementary figure 3</b> (a,b,c,d) primitive mantle; (e,f,g,h) chondrite normalized spidergram for clinopyroxene trace element concentration of forearc peridotites from literatures. (i,j) Domain of forearc peridotite with clinopyroxene data from Daito ridge (Morishita et al. 2018b). Clinopyroxene trace element pattern of Rutland Island peridotite is also shown.<br><b><br></b><b>Supplementary figure 4</b> (a) AFM (Irvine and Baragar, 1971) plot and trace element-based alkalinity test diagram (Ross and Bédard, 2009) (b) Th/Yb-Zr/Y; (c) Y-Zr; (d) Yb-La, (e) Yb-Th for volcanic rocks of Andaman ophiolite<i><br></i><i><b>Note:</b></i><i><b><br></b></i><i>References in supporting information are cited in the main text and included in the reference list of the main paper.</i><i><br></i><i>All data including supporting information for the manuscript are available at Figshare https://doi.org/10.6084/m9.figshare.11396469.v4</i><br>
DOI: 10.6084/m9.figshare.11396469.v5
title: Supporting information and dataset associated to the paper: Geochemical and geochronological record of the Andaman Ophiolite, SE Asia: from back-arc to forearc during subduction polarity reversal

description: Data and Supporting Information for the manuscript titled<i>Geochemical and geochronological record of the Andaman Ophiolite, SE Asia: from back-arc to forearc during subduction polarity reversal</i><br><i>Contents: </i><b><br></b><b>Table captions (Data and supporting information)<br><br></b><b>Table 1.</b> Geographic location and petrographic summary of the studied samples of Andaman ophiolites<br><b>Table 2.</b> Bulk rock geochemistry of selected samples of volcanic rocks from Andaman ophiolites<br><b>Table 3.</b> U-Pb data for zircon from Andaman samples<br><b>Supplementary Table 1.</b> Analyses for blanks, replicates and standards used for bulk rock analysis of volcanic rocks<br><b>Supplementary Table 2.</b> Compilation of the available bulk rock geochemical data of volcanic rocks from Andaman and Nicobar Islands (including the data obtained in the present study)<i><b><br></b></i><b>Figure captions (Supporting information)<br><br></b><b>Supplementary figure 1 </b>Typical morphologies of zircon in the three populations investigated. Numbers correspond to those in <b>Table 3</b>. The grains are about 70-150 micron long.<br><br><b>Supplementary figure 2</b> N-MORB (a,d,g,j,m,p); with emphasis on LILE (b,e,h,k,n,q) and chondrite (c,f,i,l,o,r) normalized spidergram for volcanic rocks of Andaman ophiolite.<br><br><b>Supplementary figure 3</b> (a,b,c,d) primitive mantle; (e,f,g,h) chondrite normalized spidergram for clinopyroxene trace element concentration of forearc peridotites from literatures. (i,j) Domain of forearc peridotite with clinopyroxene data from Daito ridge (Morishita et al. 2018b). Clinopyroxene trace element pattern of Rutland Island peridotite is also shown.<br><b><br></b><b>Supplementary figure 4</b> (a) AFM (Irvine and Baragar, 1971) plot and trace element-based alkalinity test diagram (Ross and Bédard, 2009) (b) Th/Yb-Zr/Y; (c) Y-Zr; (d) Yb-La, (e) Yb-Th for volcanic rocks of Andaman ophiolite<i><br></i><i><b>Note:</b></i><i><b><br></b></i><i>References in supporting information are cited in the main text and included in the reference list of the main paper.</i><i><br></i><i>All data including supporting information for the manuscript are available at Figshare https://doi.org/10.6084/m9.figshare.11396469.v5</i><br>
DOI: 10.6084/m9.figshare.11396055
title: Sequences of mitochondrial contigs for Adineta vaga individuals L1-L11 v1

description: Sequences of mitochondrial contigs for <i>A. vaga </i>individuals L1-L11 extracted from whole-genome assemblies using the mitochondrial contig from the first published <i>A. vaga</i> genome assembly (Flot et al., 2013) as the query for blastn search. For L1, mitochondrial contigs were extracted from MiSeq-based L1 diploid assembly (N50=22,073 bp). For individuals L2-L11, highly fragmented assemblies (with N50 in the range 1,600-3,400 bp) were generated from HiSeq reads with SPAdes. Mitochondrial sequences for each individual, L1-L11, are in separate FASTA files.<br>
DOI: 10.6084/m9.figshare.11396055.v1
title: Sequences of mitochondrial contigs for A. vaga individuals L1-L11

description: Sequences of mitochondrial contigs for <i>Adineta vaga </i>individuals L1-L11 extracted from whole-genome assemblies using the mitochondrial contig from the first published <i>A. vaga</i> genome assembly (Flot et al., 2013) as a query for <i>blastn</i> search. For L1, mitochondrial contigs were extracted from MiSeq-based L1 diploid assembly (N50=22,073 bp). For individuals L2-L11, highly fragmented assemblies (with N50 in the range 1,600-3,400 bp) were generated from HiSeq reads with SPAdes. Mitochondrial sequences for each individual, L1-L11, are in a separate fasta file.<br>
DOI: 10.6084/m9.figshare.11396055.v2
title: Sequences of mitochondrial contigs for A. vaga individuals L1-L11

description: Sequences of mitochondrial contigs for <i>A. vaga </i>individuals L1-L11 extracted from whole-genome assemblies using the mitochondrial contig from the first published <i>A. vaga</i> genome assembly (Flot et al., 2013) as the query for blastn search. For L1, mitochondrial contigs were extracted from MiSeq-based L1 diploid assembly (N50=22,073 bp). For individuals L2-L11, highly fragmented assemblies (with N50 in the range 1,600-3,400 bp) were generated from HiSeq reads with SPAdes. Mitochondrial sequences for each individual, L1-L11, are in separate FASTA files.<br>
DOI: 10.17633/rd.brunel.11395977
title: Simulation results and inputs for the JASS paper "How Policy Decisions Affect Refugee Journeys in South Sudan: A Study Using Automated Ensemble Simulations"

description: This dataset contains all the output data from our JASSS paper, which is available here: http://jasss.soc.surrey.ac.uk/23/1/2.html<br>We provide all necessary information to rerun these simulations as part of that paper.<br>
DOI: 10.17633/rd.brunel.11395977.v1
title: Simulation results and inputs for the JASS paper "How Policy Decisions Affect Refugee Journeys in South Sudan: A Study Using Automated Ensemble Simulations"

description: This dataset contains all the output data from our JASSS paper, which is available here: http://jasss.soc.surrey.ac.uk/23/1/2.html<br>We provide all necessary information to rerun these simulations as part of that paper.<br>