cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12172071
title: Additional file 2 of Transmissibility and pathogenicity of the emerging meningococcal serogroup W sequence type-11 complex South American strain: a mathematical modeling study

description: Additional file 2. Age-stratified annual case counts of MenW:cc11/SA and of non-MenW:cc11 in England and in France.
DOI: 10.6084/m9.figshare.12172062
title: Additional file 1 of Progressive multifocal leukoencephalopathy in a patient post allo-HCT successfully treated with JC virus specific donor lymphocytes

description: Additional file 1: Table S1. Immune cell count in peripheral blood during the course of the disease.
DOI: 10.6084/m9.figshare.12172071.v1
title: Additional file 2 of Transmissibility and pathogenicity of the emerging meningococcal serogroup W sequence type-11 complex South American strain: a mathematical modeling study

description: Additional file 2. Age-stratified annual case counts of MenW:cc11/SA and of non-MenW:cc11 in England and in France.
DOI: 10.6084/m9.figshare.12172062.v1
title: Additional file 1 of Progressive multifocal leukoencephalopathy in a patient post allo-HCT successfully treated with JC virus specific donor lymphocytes

description: Additional file 1: Table S1. Immune cell count in peripheral blood during the course of the disease.
DOI: 10.6084/m9.figshare.12172041
title: Additional file 8 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 8. Copy number profile data of liquid biopsies (paired-end).
DOI: 10.6084/m9.figshare.12172044
title: Additional file 9 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 9. Copy number profile data of liquid biopsies (paired-end; insert size filtered).
DOI: 10.6084/m9.figshare.12172041.v1
title: Additional file 8 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 8. Copy number profile data of liquid biopsies (paired-end).
DOI: 10.6084/m9.figshare.12172035
title: Additional file 7 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 7. Copy number profile data of liquid biopsies (single-end).
DOI: 10.6084/m9.figshare.12172032
title: Additional file 6 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 6. Copy number profile data of solid biopsies (single-end).
DOI: 10.6084/m9.figshare.12172044.v2
title: Additional file 9 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 9. Copy number profile data of liquid biopsies (paired-end; insert size filtered).
DOI: 10.6084/m9.figshare.12172044.v1
title: Additional file 9 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 9. Copy number profile data of liquid biopsies (paired-end; insert size filtered).
DOI: 10.6084/m9.figshare.12172035.v1
title: Additional file 7 of Shallow whole-genome sequencing of plasma cell-free DNA accurately differentiates small from non-small cell lung carcinoma

description: Additional file 7. Copy number profile data of liquid biopsies (single-end).
DOI: 10.6084/m9.figshare.12171978
title: Additional file 7 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 7. Read count matrix.
DOI: 10.6084/m9.figshare.12171969
title: Additional file 6 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 6 Up- and down-regulated pathways ranked by the change in p-value resulting from accounting for cell composition.
DOI: 10.6084/m9.figshare.12171960
title: Additional file 5 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 5. ErmineR pathway enrichment analyses before and after accounting for cell composition.
DOI: 10.6084/m9.figshare.12171957
title: Additional file 4 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 4. Summary statistics of 16s DNA-based bacterial community composition of giant clams according to their groups. Based on subsampled sequences (n=8,411). G: groups; AVG: average; SD: standard deviation; PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; 0: control; (1-3): experiment number; L: lagoon temperature; S: thermal stress; (1-4): sample number.
DOI: 10.6084/m9.figshare.12171951
title: Additional file 1 of CNV analysis of Meishan pig by next-generation sequencing and effects of AHR gene CNV on pig reproductive traits

description: Additional file 1 Table S1. Overall details of all pigs and their classification. Table S2. Overview of deletions for two pig breeds. Table S3. Overview of duplications for two pig breeds. Table S4. Detection of CNVRs in Meishan population. Table S5. Overview of CNVRs for Meishan population. Table S6. Detection of CNVRs in Duroc population. Table S7. Annotation of all the CNVRs for Meishan and Duroc pigs. Table S8. GO Enrichment Analysis for CNVR gene set by PANTHER. Table S9. KEGG and GO Enrichment Analysis for CNVR gene set by KOBAS. Table S10. Overview of given CNVRs only found in Meishan pigs. Table S11. CNV types of individuals on AHR CNV in four pig breeds.
DOI: 10.6084/m9.figshare.12171939
title: Additional file 2 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 2. Metabarcoding results of bacteria. PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; 0: control; (1-3): experiment number; L: lagoon temperature; S: thermal stress; (1-4): sample number.
DOI: 10.6084/m9.figshare.12171981
title: Additional file 8 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 8. 23s custom database.
DOI: 10.6084/m9.figshare.12171978.v1
title: Additional file 7 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 7. Read count matrix.
DOI: 10.6084/m9.figshare.12171969.v1
title: Additional file 6 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 6 Up- and down-regulated pathways ranked by the change in p-value resulting from accounting for cell composition.
DOI: 10.6084/m9.figshare.12493229
title: Effects of the COVID-19 Pandemic and a Collapsing Economy on Mental Health in Lebanon

description: <b>This dataset covers four articles about the effects of the COVID-19 pandemic and a Collapsing Economy on Mental Health in Lebanon</b>
DOI: 10.6084/m9.figshare.12171960.v1
title: Additional file 5 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 5. ErmineR pathway enrichment analyses before and after accounting for cell composition.
DOI: 10.6084/m9.figshare.12171957.v1
title: Additional file 4 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 4. Summary statistics of 16s DNA-based bacterial community composition of giant clams according to their groups. Based on subsampled sequences (n=8,411). G: groups; AVG: average; SD: standard deviation; PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; 0: control; (1-3): experiment number; L: lagoon temperature; S: thermal stress; (1-4): sample number.
DOI: 10.6084/m9.figshare.12171948
title: Additional file 4 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 4. Complete results of the differential expression analyses.
DOI: 10.6084/m9.figshare.12171951.v1
title: Additional file 1 of CNV analysis of Meishan pig by next-generation sequencing and effects of AHR gene CNV on pig reproductive traits

description: Additional file 1 Table S1. Overall details of all pigs and their classification. Table S2. Overview of deletions for two pig breeds. Table S3. Overview of duplications for two pig breeds. Table S4. Detection of CNVRs in Meishan population. Table S5. Overview of CNVRs for Meishan population. Table S6. Detection of CNVRs in Duroc population. Table S7. Annotation of all the CNVRs for Meishan and Duroc pigs. Table S8. GO Enrichment Analysis for CNVR gene set by PANTHER. Table S9. KEGG and GO Enrichment Analysis for CNVR gene set by KOBAS. Table S10. Overview of given CNVRs only found in Meishan pigs. Table S11. CNV types of individuals on AHR CNV in four pig breeds.
DOI: 10.6084/m9.figshare.12171939.v1
title: Additional file 2 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 2. Metabarcoding results of bacteria. PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; 0: control; (1-3): experiment number; L: lagoon temperature; S: thermal stress; (1-4): sample number.
DOI: 10.6084/m9.figshare.12171936
title: Additional file 1 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 1. Numbering of remaining giant clams in the aquariums during the acclimation period and experimental period according to health status. d0: seeding in the aquarium, Alive: number of healthy giant clams, Death= number of dying giant clams, Pred: death by predation. PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; L: lagoon temperature; S: thermal stress.
DOI: 10.6084/m9.figshare.12171942
title: Additional file 3 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 3. Significant genes overlapping PW and NBB accounting for cell types.
DOI: 10.6084/m9.figshare.12171927
title: Additional file 1 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 1:. Cohort demographic and experimental information.
DOI: 10.6084/m9.figshare.12171927.v1
title: Additional file 1 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 1:. Cohort demographic and experimental information.
DOI: 10.6084/m9.figshare.12171942.v1
title: Additional file 3 of Common gene expression signatures in Parkinson’s disease are driven by changes in cell composition

description: Additional file 3. Significant genes overlapping PW and NBB accounting for cell types.
DOI: 10.6084/m9.figshare.12171936.v1
title: Additional file 1 of Metabarcoding reveals distinct microbiotypes in the giant clam Tridacna maxima

description: Additional file 1. Numbering of remaining giant clams in the aquariums during the acclimation period and experimental period according to health status. d0: seeding in the aquarium, Alive: number of healthy giant clams, Death= number of dying giant clams, Pred: death by predation. PAT: P. damicornis, A. cytherea and T. maxima; AT: A. cytherea and T. maxima; T: T. maxima; L: lagoon temperature; S: thermal stress.
DOI: 10.6084/m9.figshare.12171909
title: Additional file 2 of Hippocampal granule cell dispersion: a non-specific finding in pediatric patients with no history of seizures

description: Additional file 2.Full list of cases with clinical history. List of total 147 autopsy cases studied, along with a table of their clinical history obtained from the patient records and histology archives of Seattle Children’s Hospital Department of Pathology (2014-2019). Variables analyzed included age, gender, post-mortem interval, seizure history and interval (onset till death) and major systemic clinical diagnoses including malformations or other problems in central nervous system (CNS), which denotes many acquired forms of CNS injury such as hypoxic-ischemic encephalopathy (HIE), cerebral edema. The blue highlights demarcate the seizure/epilepsy cases tabulated in Table 1. The pink highlights demarcate the controls demonstrating GCD, as tabulated inhippocampal section. GW, gestational weeks; TT, tram-track; DA, disaggregated; PMI, post-mortem interval; hr, hour(s); wk, week(s); mo, month(s); yr, year(s). Table 2. The non-highlighted rows demarcate cadaveric control reports with no clinical history of seizures and no evidence of GCD in any available hippocampal section. GW, gestational weeks; TT, tram-track; DA, disaggregated; PMI, post-mortem interval; hr, hour(s); wk, week(s); mo, month(s); yr, year(s).
DOI: 10.6084/m9.figshare.12171909.v1
title: Additional file 2 of Hippocampal granule cell dispersion: a non-specific finding in pediatric patients with no history of seizures

description: Additional file 2.Full list of cases with clinical history. List of total 147 autopsy cases studied, along with a table of their clinical history obtained from the patient records and histology archives of Seattle Children’s Hospital Department of Pathology (2014-2019). Variables analyzed included age, gender, post-mortem interval, seizure history and interval (onset till death) and major systemic clinical diagnoses including malformations or other problems in central nervous system (CNS), which denotes many acquired forms of CNS injury such as hypoxic-ischemic encephalopathy (HIE), cerebral edema. The blue highlights demarcate the seizure/epilepsy cases tabulated in Table 1. The pink highlights demarcate the controls demonstrating GCD, as tabulated inhippocampal section. GW, gestational weeks; TT, tram-track; DA, disaggregated; PMI, post-mortem interval; hr, hour(s); wk, week(s); mo, month(s); yr, year(s). Table 2. The non-highlighted rows demarcate cadaveric control reports with no clinical history of seizures and no evidence of GCD in any available hippocampal section. GW, gestational weeks; TT, tram-track; DA, disaggregated; PMI, post-mortem interval; hr, hour(s); wk, week(s); mo, month(s); yr, year(s).
DOI: 10.6084/m9.figshare.12171885
title: Additional file 1 of Latest trends in Leishmania infantum infection in dogs in Spain, Part I: mapped seroprevalence and sand fly distributions

description: Additional file 1: Table S1. Detailed information about sites surveyed for sand flies across the Iberian Peninsula and Balearic Islands.
DOI: 10.6084/m9.figshare.12171885.v1
title: Additional file 1 of Latest trends in Leishmania infantum infection in dogs in Spain, Part I: mapped seroprevalence and sand fly distributions

description: Additional file 1: Table S1. Detailed information about sites surveyed for sand flies across the Iberian Peninsula and Balearic Islands.
DOI: 10.6084/m9.figshare.12171840
title: Additional file 2 of Improved lipid productivity in Nannochloropsis gaditana in nitrogen-replete conditions by selection of pale green mutants

description: Additional file 2: Dataset S1. List of single nucleotide variants (SNVs) identified in e8 mutant.
DOI: 10.6084/m9.figshare.12171840.v1
title: Additional file 2 of Improved lipid productivity in Nannochloropsis gaditana in nitrogen-replete conditions by selection of pale green mutants

description: Additional file 2: Dataset S1. List of single nucleotide variants (SNVs) identified in e8 mutant.
DOI: 10.6084/m9.figshare.12171741
title: work environment.xlsx

description: These are measurements of the environment at the venturi reactor.
DOI: 10.6084/m9.figshare.12171729
title: Feed restriction since lactation has reduced anxiety in adult Wistar rats

description: ABSTRACT Objective To evaluate the effects of macronutrients (protein, carbohydrate and/or lipid) in the diet of young adult (72 days) and adult (182 days) Wistar rats treated ad libitum and with 30% restriction from birth on anxiety in the elevated plus-maze. Methods We used 238 rats treated from birth, composing the groups: Control, Protein, Carbohydrate, Lipid, Carbohydrate and Lipid, Control Restriction, Protein Restriction, Carbohydrate Restriction, Lipid Restriction and Carbohydrate and Lipid Restriction. The animals were weighed at the beginning and at the end of the experiment and tested in the elevated plus-maze. Data were submitted to analysis of variance, followed by the Newman-Keuls Test (p&lt;0.05). Results Among the animals treated ad libitum, the Control, Carbohydrate plus Lipid and Lipid gained more weight than the Carbohydrate and Protein; ad libitum animals gained more weight than those on restriction; among the restrictions, Carbohydrate Restriction rats were the ones that gained less weight. Diet-restricted animals exhibited reduced first-entry latency, greater percentage of entries and time spent, frequency of open arm extremity visits, head dipping (protected and unprotected), and length of stay in the central area of the elevated plus-maze. The animals with 182 days presented greater latency for first entry, reduced frequency of false entries and visits to the ends of the open arms and protected head dipping. Conclusion Food restricted animals, regardless of the macronutrient present in the diet, were less anxious and/or increased their impulsivity and those at 182 days were more anxious and/or with reduced impulsivity.
DOI: 10.6084/m9.figshare.12171741.v2
title: work environment.xlsx

description: These are measurements of the environment at the venturi reactor.
DOI: 10.6084/m9.figshare.12171720
title: Matrix support in worker’s health in Paraná, Brazil: potential and challenges

description: Abstract Introduction: the duties of the Occupational Health Reference Centers (Cerest) are under discussion in Brazil regarding the support processes for the implementation of Occupational Health actions in the Unified Health System (SUS). The Matrix Support (MS) project provides a new competence to these units in order to overcome the fragmentation of the Brazilian Network of Integral Care to Workers’ Health (Renast). Objective: to analyze the MS actions in Occupational Health (OH) developed by Cerest units within the scope of the Health Department of the state of Paraná, Brazil. Methods: a descriptive, exploratory, and qualitative approach was conducted in 2016. The study applied an electronic form for semi-structured interviews with 35 participants of MS activities in OH and content analysis of the information collected. Results: the improved dialogical relationship between matrix-assistants and matrix-assisted evidenced the MS potentiality providing a greater bond and appropriation of the characteristics of the state territories. Discussion: the difficulties identified consisted of the number and constitution of the teams, which limits the appropriation of theoretical assumptions of OH and the effective MS implementation.
DOI: 10.6084/m9.figshare.12171729.v1
title: Feed restriction since lactation has reduced anxiety in adult Wistar rats

description: ABSTRACT Objective To evaluate the effects of macronutrients (protein, carbohydrate and/or lipid) in the diet of young adult (72 days) and adult (182 days) Wistar rats treated ad libitum and with 30% restriction from birth on anxiety in the elevated plus-maze. Methods We used 238 rats treated from birth, composing the groups: Control, Protein, Carbohydrate, Lipid, Carbohydrate and Lipid, Control Restriction, Protein Restriction, Carbohydrate Restriction, Lipid Restriction and Carbohydrate and Lipid Restriction. The animals were weighed at the beginning and at the end of the experiment and tested in the elevated plus-maze. Data were submitted to analysis of variance, followed by the Newman-Keuls Test (p&lt;0.05). Results Among the animals treated ad libitum, the Control, Carbohydrate plus Lipid and Lipid gained more weight than the Carbohydrate and Protein; ad libitum animals gained more weight than those on restriction; among the restrictions, Carbohydrate Restriction rats were the ones that gained less weight. Diet-restricted animals exhibited reduced first-entry latency, greater percentage of entries and time spent, frequency of open arm extremity visits, head dipping (protected and unprotected), and length of stay in the central area of the elevated plus-maze. The animals with 182 days presented greater latency for first entry, reduced frequency of false entries and visits to the ends of the open arms and protected head dipping. Conclusion Food restricted animals, regardless of the macronutrient present in the diet, were less anxious and/or increased their impulsivity and those at 182 days were more anxious and/or with reduced impulsivity.
DOI: 10.6084/m9.figshare.12171717
title: Granular cell tumor of the breast: correlations between imaging and pathology findings

description: Abstract Objective: To review the imaging features of granular cell tumors of the breast (on mammography, ultrasound, and magnetic resonance imaging), establishing a pathological correlation, in order to familiarize radiologists with this entity and make them aware of the differential diagnoses, other than malignancy, of lesions with spiculated margins. Materials and Methods: We reviewed the medical records (from a clinical-pathology database and picture archiving and communication system) of five patients with a pathologically confirmed diagnosis of granular cell tumor of the breast, treated at the Portuguese Oncology Institute of Lisbon, in the city of Lisbon, Portugal, between January 2012 and December 2018. Results: All five tumors exhibited imaging features highly suggestive of malignancy (BI-RADS 5 lesions), namely spiculated margins, significant depth, and posterior acoustic shadowing (on ultrasound). One tumor showed a kinetic curve indicative of washout on magnetic resonance imaging, two were adherent to the pectoralis muscle, and one was accompanied by skin retraction. Pathology provided the definitive diagnosis in all cases. Conclusion: Granular cell tumors of the breast pose a diagnostic challenge because they can present with clinical and imaging features mimicking malignancy, and the diagnosis is therefore provided by pathology. Radiologists should be familiarized with this entity, so they can be aware of the fact that breast lesions with spiculated margins can be indicative of diagnoses other than malignancy.
DOI: 10.6084/m9.figshare.12171720.v1
title: Matrix support in worker’s health in Paraná, Brazil: potential and challenges

description: Abstract Introduction: the duties of the Occupational Health Reference Centers (Cerest) are under discussion in Brazil regarding the support processes for the implementation of Occupational Health actions in the Unified Health System (SUS). The Matrix Support (MS) project provides a new competence to these units in order to overcome the fragmentation of the Brazilian Network of Integral Care to Workers’ Health (Renast). Objective: to analyze the MS actions in Occupational Health (OH) developed by Cerest units within the scope of the Health Department of the state of Paraná, Brazil. Methods: a descriptive, exploratory, and qualitative approach was conducted in 2016. The study applied an electronic form for semi-structured interviews with 35 participants of MS activities in OH and content analysis of the information collected. Results: the improved dialogical relationship between matrix-assistants and matrix-assisted evidenced the MS potentiality providing a greater bond and appropriation of the characteristics of the state territories. Discussion: the difficulties identified consisted of the number and constitution of the teams, which limits the appropriation of theoretical assumptions of OH and the effective MS implementation.
DOI: 10.6084/m9.figshare.12171741.v1
title: work environment.xlsx

description: These are measurements of the environment at the venturi reactor.