cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4d236/2
title: Database of skull measurements

description: Each text file contains the residuals from the MANOVA carried out in each of the mammal families ,as described in the original manuscript. All results published in the manuscript can be obtained from these residuals. Rows represent each specimen measured. And columns represent each of the 35 skull measurements, in the same order as they appear in the manuscript. All measurements were obtained from museum specimens using a 3D digitizer. Please contact the main author if you have any questions.
DOI: 10.5061/dryad.4gk80/3
title: Pyrosequencing fasta file from bacteria associated with the trophosome of Ridgeia piscesae - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Partial SSU rRNA gene sequences obtained from the trophosome of Ridgeia piscesae in hydrothermal habitats contrasted by flow regime. This data was obtained from pyrosequencing.
DOI: 10.5061/dryad.4rj2s/18
title: NJTree_Myctophidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/19
title: NJTree_Ommastrephidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/20
title: NJTree_Sternoptychidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/21
title: NJTree_Synaphobranchidae
DOI: 10.5061/dryad.4rj2s/22
title: NJTree_Trichiuridae
DOI: 10.5061/dryad.4rj2s/23
title: Tree

description: Tree file run in POY
DOI: 10.5061/dryad.4rj2s/24
title: POYAlignment

description: Alignments between reference and sample sequences to produce a tree in POY
DOI: 10.5061/dryad.4rj2s/25
title: BootstrapTree

description: Bootstrap tree consensus file produced in POY
DOI: 10.5061/dryad.5n01h/1
title: Ensemble refinement 20 datasets
DOI: 10.5061/dryad.603d2/1
title: CHC G3 Dryad

description: Zipped scripts and processed data. Please see additional archives described in paper for raw sequence data.
DOI: 10.5061/dryad.60j76/1
title: Seed weights of Pinus pinaster genotypes and open pollinated families

description: See Readme file
DOI: 10.5061/dryad.61649/4
title: TRAGUST_pHpaper_data
DOI: 10.5061/dryad.67p55/3
title: amplifier coordinates

description: Tps file including the coordinates for landmarks configurations of the amplifier for every specimen digitized in this study. Scale represent centroid size, comments represent species names. This file can be open with any of the tps software (http://life.bio.sunysb.edu/morph/).
DOI: 10.5061/dryad.6b2c9/1
title: Drew EtAlSharkToothWeapon

description: Photographs of shark toothed weapons in the Anthropology holdings of the Field Museum of Natural History (Chicago, IL USA)
DOI: 10.5061/dryad.7137r/1
title: bird1174_pair1_tutor_all_songs

description: sound file
DOI: 10.5061/dryad.7137r/4
title: bird1214_pair2_tutor_all_songs
DOI: 10.5061/dryad.7137r/5
title: bird1373_pair2_son1_all_songs
DOI: 10.5061/dryad.7137r/6
title: bird1375_pair2_son2_all_songs
DOI: 10.5061/dryad.7137r/7
title: bird165_pair3_tutor_all_songs
DOI: 10.5061/dryad.7137r/8
title: bird1381_pair3_son1_all_songs
DOI: 10.5061/dryad.7137r/9
title: bird1382_pair3_son2_all_songs
DOI: 10.5061/dryad.7kd74/3
title: Microsatellites genotypes

description: Microsatellites genotypes of 180 individuals (170 samples of silver pheasants and 10 kalij pheasants) for 11 STR loci. Pop code corresponding to "population label" in table "Smapling Locations".
DOI: 10.5061/dryad.8sb5h/1
title: McMorran Figure 1
DOI: 10.5061/dryad.8sb5h/4
title: McMorran Figure 4
DOI: 10.5061/dryad.8sb5h/7
title: McMorran Figure S4
DOI: 10.5061/dryad.cp6gg/5
title: Key to Identification Numbers

description: This pdf file contains the list of individuals used in phylogenetic analyses. Museum catalog numbers and field collection numbers are provided for each sample, when available. In a few instances, voucher numbers for sequences downloaded from GenBank were unavailable.
DOI: 10.5061/dryad.dd815/1
title: 1960-2010 data fledging mass

description: Longitudinal dataset used to study effects of fledging mass on local first-year survival in great tits.
DOI: 10.5061/dryad.dd815/2
title: exp data fledging mass

description: Experimental data used to analyse effects of fledging mass on first-year survival in great tits.
DOI: 10.5061/dryad.fb280/3
title: Poecilia_S7n57.Dryad

description: Poecilia sphenops species complex nuclear gene data set. Ribosomal S7 protein gene obtained from 57 individuals form the Poecilia sphenops species complex and closely related species and sister genus. Full information of species, sampling localities and additional genes sequenced is given in the enclosed README file (Table 1 from the original manuscript).
DOI: 10.5061/dryad.ff52k/2
title: lifetime

description: includes variables used for female lifetime reproductive success and ornament expression
DOI: 10.5061/dryad.fj594/4
title: IlluminaContaminants

description: List of possible Illumina adaptor contaminants used in read trimming.
DOI: 10.5061/dryad.h0228/1
title: DarwinTunes-medley-at-0-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/2
title: DarwinTunes-medley-at-150-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.jm8vp/3
title: STable 3

description: Variable encounter rate model - variation in number of individuals females encounter when seeking a mate
DOI: 10.5061/dryad.jv0gh/1
title: subjectData_1of2

description: Data from subjects 1-6
DOI: 10.5061/dryad.m0n61/8
title: STRUCTURE data file

description: input data file for STRUCTURE analysis, with individual coded by haplotype assignment per locus
DOI: 10.5061/dryad.m6k1r/1
title: H18 FORTRAN code

description: H18 is the FORTRAN program for evolving behaviour based on emotions in a fish population.
DOI: 10.5061/dryad.m6k1r/2
title: Commonfish Common block for FORTRAN program

description: This file contains a commonblock which will be read by and included in many subroutines of the H18.f90 FORTRAN program.
DOI: 10.5061/dryad.m6k1r/3
title: i101-parameters parameter file

description: This file contains the parameter values the researcher may change for the H18.f90 FORTRAN program for fish behaviour by emotion. The file will be read by the FORTRAN program.
DOI: 10.5061/dryad.n630t/4
title: CowCalfDad_genotypesJan2012_Dryad
DOI: 10.5061/dryad.n630t/5
title: offspring_CowCalf_dataset_Jan12

description: CERVUS input file for paternity assignment analysis. Lists cow-calf pairs and candidate males.
DOI: 10.5061/dryad.q1nc0/1
title: Desmognathus.Genotypes.02Feb2012

description: Microsatellite genotypes in GenAlex format for five urban populations of northern dusky salamanders.  Site name: HPN = North Highbridge Park; HPS = South Highbridge Park; CPW = Corson's Brook Woods; RB = Reed's Basket Willow; WR = Watchung Reservation
DOI: 10.5061/dryad.q96d7/1
title: phylogeny of caniform carnivores

description: A time-calibrated phylogeny of caniform carnivora used in the paper to estimate rates of body size evolution. The phylogeny is composed on individually inferred family level trees appended to a backbone from Eizirik et al. (2010: MPE). Full details of phylogeny reconstruction are provided in appendix 2 of the paper.
DOI: 10.5061/dryad.r3j5d/1
title: Habitat raster

description: A raster in ArcASCII format giving the habitat feature classes in the study area (Smoothstone-Wapeweka caribou range, Saskatchewan, Canada)
DOI: 10.5061/dryad.r3j5d/2
title: Genotype data

description: Genotypes for 95 boreal woodland caribou at 10 microsatellite loci.
DOI: 10.5061/dryad.s1092/6
title: Ejection.sim

description: Timing and number of sperm ejected after mating for D. simulans. Variables: Block – different experimental blocks, A and B; FirstM – transgenic line of first male by sperm label, GFP or RFP. Second male is automatically the reciprocal label; Mates – number of times each female mated; Remate – day after first mating (day 0) on which female remated; Cop1 – duration in minutes of the first copulation; Cop2 – duration in minutes of the second copulation; EjTime1 –Ejection time after first mating, in minutes after the start of the mating; EjTime2 – Ejection time after second mating, in minutes after the start of mating; PriorProg – number of progeny produced by female before remating; Eject1 – number of first-male sperm in ejection after first mating; EjMale1 – number of first-male sperm in ejection after second mating; EjMale2 – number of second-male sperm in ejection after second mating; Bursa1 – number of first-male sperm in the bursa; Bursa2 – number of second-male sperm in the bursa; Prox1 – number of first-male sperm in the proximal half of the SR; Prox2 – number of second-male sperm in the proximal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist2 – number of second-male sperm in the distal half of the SR; Caps1 – number of first-male sperm in the two spermathecal caps combined; Caps2 – number of second-male sperm in the two spermathecal caps combined; Ducts1 – number of first-male sperm in the two spermathecal ducts combined; Ducts2 – number of second-male sperm in the two spermathecal ducts combined
DOI: 10.5061/dryad.1556p/1
title: Hirst_Kiorboe_SSD_Appendix

description: Male and female body sizes of copepod species, with details of length type, the ratio of these sizes in single species, and the sources of all data sets.
DOI: 10.5061/dryad.1q030/1
title: journal-based-sample-trial-articles

description: List of all 698 articles analyzed in the study. The first sheet contains comments. The second sheet has article data.
DOI: 10.5061/dryad.1r7m0/1
title: Richmond et al 2014_mtDNA

description: Interleaved Nexus file containing mtDNA sequence data (cytochrome b and partial control region) for Gasterosteus aculeatus from the Santa Clara and Ventura Rivers, California
DOI: 10.5061/dryad.22c78/1
title: SPSS data files representing Amplitude normalized EMG data

description: The data include 6 SPSS (*.sav) data files that contain the amplitude normalized EMG amplitudes for four phases of the gait cycle (first double support phase (DS1), the single support phase (SS), the second doiuble support phase (DS2), and the swing phase (SW)) for each of the six muscles that were assessed (Erector Spinae (ES), Gluteus Medius (GM), Biceps Femoris (BF), Vastud Lateralis (VL), Medial Gastrocnemius (MG), and Tibilis Anterior (TA).
DOI: 10.5061/dryad.2637g/4
title: comparative material

description: extant comparative material scored for the phylogenetic analysis
DOI: 10.5061/dryad.2cf56/2
title: Pattern and chromatic contrast data

description: Table with data on chromatic contrast (Delta S) and measurements of dark dorsal patterns in populations of Oophaga pumilio.
DOI: 10.5061/dryad.2n545/5
title: M755
DOI: 10.5061/dryad.38r08/1
title: Spring Phenology Data
DOI: 10.5061/dryad.3m5fc/1
title: Killer Whale example code and matrix

description: Matlab code for the killer whale example including stage structured transition matrix. Initial data published by Caswell (2001) based on Brault & Caswell (1993)
DOI: 10.5061/dryad.3m5fc/2
title: Killer Whale example output

description: Output from the matlab code for the killer whale example.
DOI: 10.5061/dryad.3m5fc/3
title: Matlab code for two patch model run first

description: This generates the matrices and information that is later used in the patches-analysis.m file. So run this file first.
DOI: 10.5061/dryad.3m5fc/4
title: Matlab code two patch example run second

description: Matlab code for the two patch model that estimating the data used in Fig. 3 of the article
DOI: 10.5061/dryad.43h8c/4
title: Chr4
DOI: 10.5061/dryad.4s6g0/2
title: Langos et al genotypes

description: Genotypes for focals and sires. First row gives header for several columns. including ID = identities of animals; e.g. D2s367 names of markers
DOI: 10.5061/dryad.4tn86/1
title: Transfer rates and digit ratios
DOI: 10.5061/dryad.6023qs3k/12
title: R script for randomisation

description: R script for randomisation.
DOI: 10.5061/dryad.61649/3
title: TRAGUST_In-vivoConidiosporeNumberGermination_data
DOI: 10.5061/dryad.61649/5
title: TRAGUST_SPME_data
DOI: 10.5061/dryad.675tt/4
title: rbc size

description: Red blood cell nucleus area, total cell area, and nucleus to total cell area ratios in dwarf and normal lake whitefish from three lakes. Fifty red blood cells were measured for each individual and the values reported represent mean estimates.
DOI: 10.5061/dryad.67p55/4
title: tool coordinates

description: Tps file including the coordinates for landmarks configurations of the tool for every specimen digitized in this study. Scale represent centroid size, comments represent species names. This file can be open with any of the tps software (http://life.bio.sunysb.edu/morph/).
DOI: 10.5061/dryad.6d8g5/3
title: SPAGeDi_Reef16genospace

description: Input file for the program, Spatial Pattern Analysis of Genetic Diversity (SPAGeDi; Hardy and Vekemans 2002) giving spatial and multi-locus genetic data for Pocilopora damicornis samples taken from Reef 16, one of the "neighboring reefs" in our study. From left to right, columns represent Sample ID Number, x coordinate, y coordinate, and genotypes at each of 6 microsatellite loci.
DOI: 10.5061/dryad.6rj28/1
title: task1_data

description: Trial by trial data for all lizards in instrumental task (task 1). "Liz.ID" is a combination of toe-clips and PIT tags. "Dem.ID" is the ID of the demonstrating lizard. "Batch" is the batch number (three-level factor) each lizard was associated with.  "Treat" two-level factor of treatment - SL = Social demonstration, C = Control. "Age" - two-level factor identifying age class of lizard. "LT" are learning trials - i.e. trials until the lizard learnt. "correct.incorrect" - whether the lizard flipped the yellow lid successfully (1) or unsuccessfully (0). "Lat_min1" - time from start of trial to the point when the lizard successfully flipped the yellow lid. "Learn" two level factor identifying whether the lizard learn the task (1) or not (0). 'trial' trial number for each lizard. "juldat" is the jillian date that each trial was run.
DOI: 10.5061/dryad.6rj28/2
title: data_T2_final

description: Trial by trial data for all lizards in association task (task 2). "Liz.ID" is a combination of toe-clips and PIT tags. "Dem.ID" is the ID of the demonstrating lizard. "Batch" is the batch number (three-level factor) each lizard was associated with.  "Treat" two-level factor of treatment - SL = Social demonstration, C = Control. "Age" - two-level factor identifying age class of lizard. "LT" are learning trials - i.e. trials until the lizard learnt. "correct.incorrect" - whether the lizard flipped the blue lid successfully (1) or unsuccessfully (0). "Lat_Blue.min1" - time from start of trial to the point when the lizard successfully flipped the blue lid. "Learn" two level factor identifying whether the lizard learnt the task (1) or not (0). 'trial' trial number for each lizard. "juldat" is the jillian date that each trial was run. "blue.choice" - whether the lizard choose only the blue lid (1) or whether the lizard choose either the blue then the white or only the white lid (0).
DOI: 10.5061/dryad.6sm71/1
title: Genetic elimination of fieldcage populations of Mediterranean fruit flies

description: Raw count data for all mating and field cage suppression trials detailed in manuscript along with life history description data
DOI: 10.5061/dryad.7137r/10
title: bird657_pair4_tutor_all_songs
DOI: 10.5061/dryad.7kn7r/1
title: Porcine 60K SNP genotypes for F2 and Sutai pigs

description: Dataset corresponds to the article: "Genome-wide Association Study of Meat Quality Traits in a White Duroc × Erhualian F2 intercross and Chinese Sutai Pigs" Junwu Ma, Lusheng Huang. For any correspondnce, please address Lusheng Huang (lushenghuang@hotmail.com). The tarred file "Porcine 60K SNP genotype of F2 and Sutai pigs.zip" contains 3 PLINK format files (.map and .ped). The first file "SNP60K_positions.map" gives the positions of 62163 SNPs (from the Illumina's Porcine SNP60 Beadchips) according to the Sscrofa10.2 assembly.The second file "F2_genotypes.ped" contains these SNPs genotypes for 939 F2 individuals derived from the White Duroc×Erhualian (WE) resource population. The third file "Sutai_genotypes.ped" contains these SNPs genotypes for 434 Sutai pigs.
DOI: 10.5061/dryad.7m6kg/52
title: Fig. 9f: ROM 59663 – Nectocaris pteryx from the Burgess Shale

description: Sediment interdigitates between gill blades; blades are deflected posteriad
DOI: 10.5061/dryad.7m6kg/53
title: Fig. 9g: ROM 59656 – Nectocaris pteryx from the Burgess Shale

description: Anterior gill blades deflected backwards by interdigitating sediment; undeformed posterior blades canalize the sediment
DOI: 10.5061/dryad.7m6kg/58
title: Fig. 10f: ROM 59670 – Nectocaris pteryx from the Burgess Shale

description: Distinct colouration in lateral body
DOI: 10.5061/dryad.7m6kg/59
title: Fig. 10g: ROM 59656 – Nectocaris pteryx from the Burgess Shale

description: Complete specimen
DOI: 10.5061/dryad.7sn1m/2
title: Thaumetopoea pinivora DIYABC inputfile
DOI: 10.5061/dryad.82gr4/1
title: Raw 454 GS-FLX sequences from microsatellite libraries for Planococcus citri

description: High throughput DNA sequencing by 454-GS-FLX Titanium (Roche Diagnostics) chemistry of microsatellite libraries of Planococcus citri
DOI: 10.5061/dryad.8q4b9/1
title: Leonard-Pingel paleobiology SOM

description: These spreadsheet give numerical abundance data for bivalve genera found in the paleontological bulk samples collected for the associated research. One spreadsheet gives the abundance data for each genus by faunule (location), the other spreadsheet lists the abundance of each bivalve genus by individual bulk sample.
DOI: 10.5061/dryad.9qt14/1
title: DNA Sequence Data

description: Diploid nuclear DNA sequence data in fasta format.
DOI: 10.5061/dryad.9qt14/2
title: PHASE

description: Input and output files for PHASE v2.1.
DOI: 10.5061/dryad.9qt14/3
title: RAxML

description: Input, output, and gene tree files from RAxML v7.3.0.
DOI: 10.5061/dryad.9qt14/4
title: MrBayes

description: Input, output, and gene tree files from MrBayes v3.2.2.
DOI: 10.5061/dryad.9qt14/5
title: Structurama

description: Input and output files for Structurama v2.0.
DOI: 10.5061/dryad.bd6v0/1
title: data Heredity

description: the "data heredity" file provides the chloroplast and nuclear genetic data  from the 417 New Guinea varieties analyzed in the present study. It also includes their full  passeport data (names of ex situ collections, full geographical origin data and local landrace names). ND means not determined.
DOI: 10.5061/dryad.c2124/3
title: Mapping and variant calling data on SSC5:3100000-34000000

description: This file shares the same REAME as SSC11_53500000-55500000.tar
DOI: 10.5061/dryad.c8jg8/4
title: PE_PGRS35
DOI: 10.5061/dryad.c8jg8/6
title: PE_PGRS62
DOI: 10.5061/dryad.c8jg8/7
title: concatenated_PE3-PE4-PE_PGRS26-PE_PGRS35-PE_PGRS51-PE_PGRS62
DOI: 10.5061/dryad.c8jg8/8
title: concatenated_gyrA-gyrB-hsp65-katG-rpoB
DOI: 10.5061/dryad.c8jg8/9
title: TOPALi_Model_Selection_result

description: To determine the best substitution model of each alignment, we used the TOPALi v2 package.
DOI: 10.5061/dryad.d1f44/1
title: MEC-13-0218_AFLP_Data
DOI: 10.5061/dryad.d1f44/2
title: MEC-13-0218_MGD2_SeqDegapped

description: DNA sequence alignment
DOI: 10.5061/dryad.d1f44/3
title: MGD2_poly

description: codominant nuclear marker dataset
DOI: 10.5061/dryad.gs4rk/1
title: flea unigenes, ORFs, and functional annotations
DOI: 10.5061/dryad.h131s/1
title: SnakeTotalNForce

description: This file contains all of the Total Normal Force values used in the paper.  Each column includes total normal force for 10 locomotor cycles for the snake given by the IDs in line 1.
DOI: 10.5061/dryad.hb3b5/1
title: Wielgossetal_2012_Archive

description: This zipped folder contains all of the data files and scripts necessary to run the statistical analyses of this manuscript.
DOI: 10.5061/dryad.jj68n/2
title: Quemere_gh_final_data

description: This file contains the filtered sequences produced by G/H primers.The sequences have been produced by the Illumina technology (GA IIx platform).
DOI: 10.5061/dryad.js64t/1
title: KotrcKnoll2015Data

description: This .zip archive contains the data and software necessary to carry out the analyses and produce the figures in two publications by Kotrc, B. and Knoll, A.H. published side by side in the Journal Paleobiology in 2015. .R files are functions and scripts in the R programming language (www.r-project.org). The file Morphospace.R contains an R script to clean the data, carry out the analyses, and produce the figures. It makes calls to functions in the files MorphospaceFunctions.R, MorphoPlotFunctions.R, and DiversityFunctions.R. The file Matrix.txt is a comma-delimited value (.csv) file which contains the morphological data matrix. The first row contains the names of the morphological characters (X1, X2, etc). Subsequent rows contain the name of the genus and then the state of each character. The file MatrixDescriptionOfCharacters.txt contains a description of the morphological characters in that matrix, and a description of what each character state (0, 1, 2, etc) represents. The file SourcesForMorphologicalData.txt lists the literature sources consulted to compile this data. A table relating which specific references were consulted for each genus is provided in B. Kotrc’s PhD thesis, freely available at http://dash.harvard.edu/handle/1/11051218. The file NeptuneGenNamesCorrCret.txt is a download of the diatom entries Neptune database of microfossil occurrences with genus names corrected and Cretaceous occurrences from three publications added. The file NeptuneProcessed.txt is the same, but further processed to remove errors. The files ulf.aln and ulf.nwk contain RNA sequence data and a phylogenetic tree based on that data, and were supplied by Ulf Sorhannus; they are used to compare phylogenetic distance to distance in morphospace. Finally, divdisp-ow.pdf and divdisp-uw.pdf are supplemental plots (also generated by the code in this archive) pertaining to the second of the companion papers to which this archive belongs.
DOI: 10.5061/dryad.m83r0/3
title: TableS3

description: Data on basal metabolic rate and intestinal length for 30 rodent species.
DOI: 10.5061/dryad.mf587/1
title: Role of foam in sperm competition dataset

description: Competitive reproductive performance in terms of number of fertilized eggs of a pair of males (manipulated and non-manipulated) mated to the same females.  Males may (manipulated, sometimes) or may not (non-manipulated) have had their foam complements removed prior to mating. Mating order and foam complements were varied.  Abbreviations as follows: Male_Pair: the id of the male pair; Group: trial sets for two different groups; Male_Pair_Full: a combination of male pair id and group; Manip_ID: id of the manipulated male, who may or may not have had his foam removed; NonManip_ID: id of the non-manipulated male, whose foam was never removed; Female_ID: id of the mated female; Manip_Posit; mating positior of the manipulated male, either first (1) or second (2); Foam_Manip: whether or not the manipulated male's foam was removed (absent) or not (present); Number_NonManip_Fert: number of eggs fertilized from the non-manipulated male; Number_Manip_Fert: number of eggs fertilized by the manipulated male; Total_Fert: total number of eggs fertilized for a given trial; NonManip_AnyFert: whether or not the non-manipulated male fertilized any eggs (1) or none (0); Manip_AnyFert: whether or not the manipulated male fertilized any eggs (1) or none (0); Manip_LastDayFert: the last day a manipulated male fertilized any eggs; Mixed: whether or not their was mixed paternity for a given mating
DOI: 10.5061/dryad.mh742/1
title: Inbreeding interferes with the heat shock response

description: Relative quantification (RQ) of HSP70