cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20508945
title: Supplementary Material for: Cerebral Hemodynamics and Regional Oxygen Metabolism during Ductus Arteriosus Ligation in Preterm Infants

description: <b><i>Introduction:</i></b> Neurodevelopmental impairment is a growing concern for preterm infants who received surgical ligation of patent ductus arteriosus (PDA). We aimed to explore the cerebral hemodynamics during the critical period of PDA ligation. <b><i>Methods:</i></b> Very-low-birth-weight (VLBW) preterm infants who underwent PDA ligation were prospectively enrolled. Patients were monitored preoperatively and until 72 h post-ligation. Middle cerebral artery (MCA) flow, regional cerebral oxygen saturation (rcSO<sub>2</sub>), and cardiac output were measured through Doppler ultrasound, near-infrared spectroscopy, and electrical cardiometry, respectively. Using rcSO<sub>2</sub> &lt;55% indicating cerebral hypoxia, the duration (% of time) and burden (cumulative negative quantity of rsSO<sub>2</sub> &lt;55% × the period [minutes]) were estimated. An abnormal MCA was defined as an MCA flow of &lt;10th percentile of flow velocity or &gt;90th percentile of pulsatility or resistance index. Poor outcomes were defined as in-hospital death or neurologic disorders, either neuroimaging or functional abnormalities, upon discharge. <b><i>Results:</i></b> Thirty-two VLBW infants were examined, and 15 (46.9%) had poor outcomes. Infants with poor outcomes had significantly longer duration of cerebral hypoxia (5.4 [2.2–32.3] vs. 1.8 [0.4–5.6] %, <i>p</i> = 0.033) and worse hypoxic burden (2,118 [684–13,549] vs. 622 [88–1,669] %minutes, <i>p</i> = 0.027). In a linear mixed model, rcSO<sub>2</sub> was positively correlated with arterial saturation (β 0.860, 95% CI: 0.649–1.070) and negatively correlated with abnormal MCA flow (β −5.287, 95% CI: −8.238 to −2.335). <b><i>Conclusion:</i></b> Longer duration of cerebral hypoxia and worse hypoxic burden post-ligation was associated with an increased risk of in-hospital mortality or neurologic disorders upon discharge in VLBW preterm infants.
DOI: 10.5281/zenodo.5595518
title: Methods data for Islet paper.

description: Methods data for https://gmd.copernicus.org/preprints/gmd-2021-296. These can be recreated using the scripts in the methods/islet/figures directory of https://doi.org/10.5281/zenodo.5595499.
DOI: 10.5258/soton/d1790
title: The Wessex Fit-4-Cancer Surgery Trial (WesFit): a protocol for a factorial-design, pragmatic randomised-controlled trial investigating the effects of a multi-modal prehabilitation programme in patients undergoing elective major intra-cavity cancer surgery

description: Appendicies to accompany protocol paper: MA West, A Bates, C Grimmett, A Cait., R Green., L Hawkins., H Moyses., S Leggett., D Levett., S Rickard., J Varkonyi-Sepp., F Williams., S Wooton., M Hayes., MPW Grocott., S Jack. The Wessex Fit-4-Cancer Surgery Trial (WesFit): a protocol for a factorial-design, pragmatic randomised-controlled trial investigating the effects of a multi-modal prehabilitation programme in patients undergoing elective major intra–cavity cancer surgery. In the journal F1000
DOI: 10.17632/9xg52j8tmw.3
title: Visible-thermal database of rice field

description: The Visible-thermal database of rice field contains 100 pairs of images (100 visible images and 100 thermal (near-infrared) images) with dimensions of 595 x 385 pixels. 
Each image also includes mask image and Ground truth image. In order to identify each plant in both images, a number was assigned to each plant as a tag in both images. These tags are available in the label image. 
This database has been prepared in a paddy located in Amol city of Mazandaran province located in Iran with geographical coordinates (length: 52.453171 and width: 36.601498 and height 12-meters).
Images are taken in natural light. The wind speed at the time of Imaging was 10 km / h (from northwest to southeast). Also, the imaging was done in the third week after planting rice seedlings on the farm.
The T8 thermal imaging camera was used for thermal imaging with output images of 385 x 594 pixels. also, the Sony IMX234 Exmor RS sensor with a 1⁄2.6-inch detector surface area was used for visible imaging. 
The designed imaging system captures both visible and thermal images almost simultaneously from the farm surface. The center of the two cameras in the imaging system is located at a distance of 5 cm from each other and on a screen And all images were taken from a height of 120 cm relative to the water surface on the ground and at a 135-degree angle.
DOI: 10.25318/3210011201-eng
title: Production of selected dairy products

description: Production of selected products, by dairy manufacturers, Canada and provinces (tonnes unless otherwise noted). Data are available on a monthly basis.
DOI: 10.5281/zenodo.1043542
title: Precipitation Sensitivity

description: A tar file containing 40*99 ascii text files. 40 corresponds to 40 different dates, and 99 corresponds to 99 different values of model parameters in COAMPS. The file names include the date and an index which varies from 1 to 99, corresponding to the 99 parameter values. Each files is a 45 x 72 grid of real numbers, with each number denoting the 24-hour accumulated precipitation at the corresponding grid point.
DOI: 10.5281/zenodo.1186221
title: Atmospheric Halocarbon Observations At Finokalia, Crete, Greece

description: Atmospheric halocarbon (HFC, HCFC) observations (mole fractions) from the site Finokalia (FKL, 35.34 °N, 25.67 °E, 250 m a.s.l.) on the island of Crete, Greece, covering the period December 2012 to August 2013). The measurements were conducted using a gas chromatograph<br>
(Agilent 6890) and:mass spectrometer (Agilent 5973) (GC-MS), coupled to an adsorption desorption system (ADS) for preconcentration of samples from the air (Simmonds et al., 1995).

The measurements are described in detail in: Schoenenberger, F., S. Henne, M. Hill, M. K. Vollmer, G. Kouvarakis, N. Mihalopoulos, S. O'Doherty, M. Maione, L. Emmenegger, T. Peter, and S. Reimann  (2017), Abundance and Sources of Atmospheric Halocarbons in the Eastern Mediterranean, Atmos. Chem. Phys. Discuss., 2017, 1-46, doi: 10.5194/acp-2017-451.

The data format is plain text character-separated and follows that used in the AGAGE community. Further details are given at the AGAGE data archive: http://agage.eas.gatech.edu/data_archive/agage/
description: {"references": ["Schoenenberger, F., Henne, S., Hill, M., Vollmer, M. K., Kouvarakis, G., Mihalopoulos, N., O'Doherty, S., Maione, M., Emmenegger, L., Peter, T., and Reimann, S.: Abundance and sources of atmospheric halocarbons in the Eastern Mediterranean, Atmos. Chem. Phys., 18, 4069-4092, https://doi.org/10.5194/acp-18-4069-2018, 2018."]}
DOI: 10.5285/f717a8ea622f495397f4e76f777349d1
title: STFC RAL methane retrievals from IASI on board MetOp-A, version 2.0

description: This Infrared Atmospheric Sounding Interferometer (IASI) methane dataset contains height-resolved and column-averaged volume mixing ratios of atmospheric methane (CH4). It also includes column-averaged water vapour (H2O), a scale factor for the HDO (water vapour isotopologue) volume mixing ratio profile, surface temperature, effective cloud fraction, effective cloud-top pressure and scale factors for two systematic residual spectra which are jointly retrieved from the spectral range 1232.25-1290.00 cm-1 by the Rutherford Appleton Laboratory (RAL) IASI optimal estimation methane retrieval scheme. The dataset additionally contains selected a priori values and uncertainties adopted in the optimal estimation scheme and retrieval output diagnostics such as the retrieval cost and the averaging kernels. This work was funded by the National Centre for Earth Observation (NCEO) under the UK Natural Environment Research Council (NERC) with additional funding from EUMETSAT. Data were produced by the United Kingdom Research and Innnovation (UKRI) Science and Technology Facilities Council (STFC) Remote Sensing Group (RSG) at the Rutherford Appleton Laboratory (RAL). This is version 2.0 of the dataset.
DOI: 10.4225/48/5a8367feac9b2
title: OCTOPUS - CRN International
DOI: 10.4225/48/5a836cdfac9b5
title: OCTOPUS - CRN Australia
DOI: 10.4225/48/5a836db1ac9b6
title: OCTOPUS - OSL/TL Australia
DOI: 10.5066/p9vopsej
title: Extreme gradient boosting machine learning models, suspended sediment, bedload, streamflow, and geospatial data, Minnesota, 2007-2019

description: A series of machine learning (ML) models were developed for Minnesota. The ML models were trained and tested using suspended sediment, bedload, streamflow, and geospatial data to predicted suspended sediment and bedload. Suspended sediment, bedload, and streamflow data were collected during water years 2007 through 2019. The ML models were used to improve understanding of sediment transport processes and increase accuracy of estimating sediment and loads for streams and rivers across Minnesota. The contents of this data release include README files, input files, output files, and source code (R software version 3.6.1) needed to reproduce the ML models and results in the associated article in Hydrological Processes (https://doi.org/10.1002/hyp.14648). [...]
DOI: 10.5258/soton/d0450
title: Dataset for "A Comparison of Multitask and Single Task Learning with Artificial Neural Networks for Yield Curve Forecasting"

description: Dataset for:
Nunes, M., Gerding, E., McGroarty, F., & Niranjan, M. (2018). A Comparison of Multitask and Single Task Learning with Artificial Neural Networks for Yield Curve Forecasting. Expert Systems with Applications
DOI: 10.6084/m9.figshare.5579971
title: Simulated global warming in the larval stage negatively affects dispersal-related traits

description: Data used for analysis in the paper "Simulated global warming in the larval stage negatively affects dispersal-related traits", submitted to Biology Letters.<br><b></b>
DOI: 10.5281/zenodo.5577986
title: Escherichia coli DNA replication study: processed alignment data

description: Genomes are replicated by large protein complexes called replisomes. In bacterial DNA replication, two replisomes replicate the DNA starting from the same origin site and proceeding in opposite directions. Understanding their movement in vivo has been challenging. We used quantitative genome sequencing to characterize the dynamics of bacterial replisomes at 5 different temperatures (17, 22, 27, 32 and 37 °C) in exponential growth (3 replicates) or in stationary phase (one experiment at 17, 27 and 37 °C). The data deposited here give the coordinates of the sequence reads (deposited under the BioProject PRJNA772106) covering the Escherichia coli str. K-12 substr. MG1655 complete genome (accession number U00096.3). The file archive contains data files for each sample, at nucleotide resolution and binned in intervals of 10,000 base pairs. It also contains a C program to perform the binning and a README summarising how the alignment was done. <em>Please note that once uncompressed, the data will take 5 Gb of disks space in total.</em>
DOI: 10.5521/forestplots.net/2022_1
title: Data from: Reis et al. (2022). Climate and crown damage drive tree mortality in Southern Amazonian edge Forests. Journal of Ecology. DOI: 10.1111/1365-2745.13849
DOI: 10.6084/m9.figshare.20517429
title: Supplementary Material for: Liver Abscess due to <b><i>Streptococcus intermedius</i></b> Bacteremia and Its Association with Colonic Carcinoma: Is Bacteremia with <b><i>Streptococcus intermedius</i></b> an Alert for Colonic Carcinoma?

description: Liver abscess caused by some kinds of <i>Streptococcus</i> group such as <i>Streptococcus bovis</i> group has been recognized to associate with colorectal cancer. <i>Streptococcus milleri</i> group with liver abscess has not been received much attention in this point of view. Here, we report the case of a 63-year-old man who developed liver abscess with <i>S. intermedius</i>, which belongs to the <i>S. milleri</i> group. We confirmed that this case was accompanied by cecal carcinoma by colonoscopy. The tumor was a pathological lead point of intussusception of cecum. On the 26th day, open right hemicolectomy was performed. In this case, bacterial endophthalmitis was a complication due to bacteremia. The patient underwent ophthalmic surgery on the 98th day. Research investigating 16S rRNA of the mucosal colon microbiome reported that the <i>S. intermedius</i> gene was upregulated in patients with colorectal carcinoma. It is recommended that liver abscess with <i>S. intermedius</i> bacteremia should alert the clinician about the risks of carcinoma of the colon and abscess formation in distant organs. We here list the case reports of liver abscess caused by <i>Streptococcus</i> other than <i>S. bovis</i> group, which was associated with colonic carcinoma, and suggest the need for further research about <i>S. milleri</i> group.
DOI: 10.5281/zenodo.5256102
title: PRIMAVERA_UOXF_Stochastic_Experiments

description: Data from two climate model ensemble experiments ran by Kristian Strommen as part of Oxford's contribution to the Horizon 2020 Project "PRIMAVERA". Each ensemble consists of 3 simulations covering 1950-2015 with historical forcing, following the hist-1950 protocol of PRIMAVERA. The model used is the PRIMAVERA configuration of the coupled EC-Earth3 model, EC-Earth3P. One ensemble uses the default EC-Earth3P set-up (experiment id's dtc1, dtc2 and dtc3), while the other is run with an additional suite of stochastic schemes in the sea ice and ocean components of the model (experiment id's otc1, otc2 and otc3). The data here is daily sea ice concentration (siconc) and daily geopotential height at 500hPa (zg500), regridded onto a regular 2.5 degree grid. This data forms the basis of work done on Arctic-midlatitude teleconnections by Kristian Strommen and Stephan Juricke (2021).
description: Please contact K. Strommen in the event that you use this data for your research.
DOI: 10.6084/m9.figshare.19653849
title: Data and R Script: Female reproduction and viral infection in a long-lived mammal

description: R script and data used for preparation of the manuscript entitled, "Female reproduction and viral infection in a long-lived mammal".
DOI: 10.6084/m9.figshare.20496720
title: Supplementary Material for: Artificial Intelligence in Allergy and Immunology: Comparing Risk Prediction Models to Help Screen Inborn Errors of Immunity

description: <b><i>Background:</i></b> Inborn errors of immunity (IEI) are underdiagnosed disorders, leading to increased morbimortality and expenses for healthcare system. <b><i>Objectives:</i></b> The study aimed to develop and compare risk prediction model to measure the individual chance of a confirmed diagnosis of IEI in children at risk for this disorder. <b><i>Method:</i></b> Clinical and laboratory data of 128 individuals were used to derive machine learning (ML) and logistic regression risk prediction models, to measure the individual chance of a confirmed diagnosis of IEI in children with suspected disorder, according to previous general pediatrician/clinician judgement. Their performances were compared. <b><i>Results:</i></b> Statistically significant variables were mainly leucopenia, neutropenia, lymphopenia, and low levels of immunoglobulins A/G/M. ML models performed better. <b><i>Conclusion:</i></b> The enhanced predictive power provided by ML models could be a resource to track IEI, providing better healthcare outcomes.
DOI: 10.7909/c3b56gvw
title: Central California Seismic Experiment
DOI: 10.25442/hku.20506845
title: Supporting data for “Spectra-selective graphene hybrid photosensor"

description: The data package is the research data of our research project on <strong>Graphene hybrid photosensor. </strong>The data package includes the electrical tests result which are the raw data of our research. Based on these data, we successfully fabricated spectral-selective graphene photosensor with photoresponsivity as high as 8.8×104 A/W thanks to the ultra high mobility of graphene and light absorption efficiency of organic dyes. Spectral-selective photoresponse enables graphene photosensors decorated with different organic dyes exhibit distinct absorption spectrum which is essential for a full colour image sensor. The photocurrent generated in the photodetector is in proportional to the incident optical power and reaches a saturation plateau when the light intensity is over 0.1 μW. To develop an integrated, spectra-selective, full colour gamut photosensor for colour imaging, we did tentative test to scale up photosensor array with 1 μm thick Parylene thin film, the spectral response test demonstrate inducing Parylene C would not significantly affect the photoresponsivity and absorption spectrum while providing a physically and chemically stable encapsulation.
DOI: 10.25442/hku.20506845.v1
title: Supporting data for “Spectra-selective graphene hybrid photosensor"

description: The data package is the research data of our research project on <strong>Graphene hybrid photosensor. </strong>The data package includes the electrical tests result which are the raw data of our research. Based on these data, we successfully fabricated spectral-selective graphene photosensor with photoresponsivity as high as 8.8×104 A/W thanks to the ultra high mobility of graphene and light absorption efficiency of organic dyes. Spectral-selective photoresponse enables graphene photosensors decorated with different organic dyes exhibit distinct absorption spectrum which is essential for a full colour image sensor. The photocurrent generated in the photodetector is in proportional to the incident optical power and reaches a saturation plateau when the light intensity is over 0.1 μW. To develop an integrated, spectra-selective, full colour gamut photosensor for colour imaging, we did tentative test to scale up photosensor array with 1 μm thick Parylene thin film, the spectral response test demonstrate inducing Parylene C would not significantly affect the photoresponsivity and absorption spectrum while providing a physically and chemically stable encapsulation.
DOI: 10.25442/hku.20508537
title: Supporting data for "The hormonal regulation of brain-derived neurotrophic factor (BDNF) and its role in inflammatory myopathy"

description: The dataset included are categorized according to the structure of this study regarding the expression of a gene named Bdnf and its role in inflammatory myopathy. This dataset demonstrates the estrogenic role in skeletal muscle-specific Bdnf level regulation, the physiological function of such regulation, histological presentation of myopathy features in BDNF-deficient muscle, and analysis of several cell death-related molecular pathways in BDNF-deficient muscle. Raw data and original images are included and properly named accroding to the independent variable(s) being investigated in the corresponding sections.
DOI: 10.25442/hku.20508537.v1
title: Supporting data for "The hormonal regulation of brain-derived neurotrophic factor (BDNF) and its role in inflammatory myopathy"

description: The dataset included are categorized according to the structure of this study regarding the expression of a gene named Bdnf and its role in inflammatory myopathy. This dataset demonstrates the estrogenic role in skeletal muscle-specific Bdnf level regulation, the physiological function of such regulation, histological presentation of myopathy features in BDNF-deficient muscle, and analysis of several cell death-related molecular pathways in BDNF-deficient muscle. Raw data and original images are included and properly named accroding to the independent variable(s) being investigated in the corresponding sections.
DOI: 10.5281/zenodo.3712367
title: In-place molecular preservation of cellulose in 5000-year-old archaeological textiles

description: AFM-IR, FT-IR, SHG and µCT datasets associated to the paper "In-place molecular preservation of cellulose in 5000-year-old archaeological textiles"
DOI: 10.5281/zenodo.3712368
title: In-place molecular preservation of cellulose in 5000-year-old archaeological textiles

description: AFM-IR, FT-IR, SHG and µCT datasets associated to the paper "In-place molecular preservation of cellulose in 5000-year-old archaeological textiles"
DOI: 10.14469/hpc/11040
title: Design problem solutions for Bayesian optimisation of PVSA CO2 capture processes

description: This repository contains MATLAB .mat files detailing the results generated by solution of the PVSA design problems presented in Ward & Pini (2022): “Efficient Bayesian Optimisation of Industrial-Scale Pressure-Vacuum Swing Adsorption Processes for CO2 Capture”. Please see the published manuscript for full details of the problem definitions and solution approaches. The filename for each .mat file specifies which design problem the results correspond to. The structure of the filenames is as follows: “optimiser_material_problem_pressure.mat”. The optimiser is either the Thompson Sampling Efficient Multi-Objective Optimisation (TSEMO) or the non-dominated sorting Genetic Algorithm II (GA). The material is either zeolite 13X or ZIF-36-FRL. The problem can be either unconstrained purity/recovery optimisation, constrained productivity/energy optimisation or constrained capture cost optimisation. The pressure corresponds to the fixed evacuation pressure for which the PVSA design problem is solved (pL = 0.02 – 0.1 bar). For the TSEMO results files, the objective functions are stored in the array “Y”. Where for unconstrained optimisation the columns of “Y” are purity (%) and recovery (%), for constrained optimisation the columns are productivity (mol/m3/s) and energy usage (kWh/tonne) and for cost optimisation “Y” contains the capture cost ($/tonne). Each row of “Y” corresponds to a specific operating point which TSEMO evaluated during solution of the design problem. The decision variables which generate the model outputs stored in “Y” can be found in “X”. The columns of “X” are as follows: [t_ads (s), t_bd (s), t_evac (s), pH (bar), pI (bar), vF (m/s)]. The arrays “Ypareto” and “Xpareto” are the entries of “Y” and “X”, respectively, which form the Pareto front from the full set of simulations. For the GA results files, only the final Pareto fronts are provided. The optimal objective function values are found in “fval”, which has the same format as “Y” in the corresponding TSEMO solutions. The decision variables which generate each operating point in “fval” are found in “x”, which has the same format as “X” in the corresponding TSEMO solutions. The excel file “TEA_outputs.xlsx” contains a detailed breakdown of the cost optimal processes generated by solution of the design problems presented in Section 6.1 of the published paper.