cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.xzcybm
title: Occurrence Download

description: A dataset containing 1181 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hirschfeldia incana (Linnaeus, 1755) Lagr."
 ]
}

 The dataset includes 1181 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043343-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uwh3kw
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diuraphis noxia (Mordvilko, 1913)"
 ]
}

 The dataset includes 315 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043344-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smm3j9
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ulmus glabra x minor"
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043345-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3nr3ws
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Starksia ocellata (Steindachner, 1876)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043346-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqu6zp
title: Occurrence Download

description: A dataset listing the 3 species recorded in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptinotarsa decemlineata (Say, 1824)"
 ]
}

 The dataset's 3 records were derived from 310 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043327-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2z27nu
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diuraphis noxia (Kurdjumov, 1913)"
 ]
}

 The dataset includes 153 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043349-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.97cj4b
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stegastes fuscus (Cuvier, 1830)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 173 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043351-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34943/801b133a-1147-44cc-a416-7f0c5cca819d
title: Nanaimo Accelerometer Deployed 2024-12-18

description: The Nanometrics Titan SMA (S/N 000819) was deployed on 2024-12-18 at Nanaimo. Nanaimo is a city on the east coast of Vancouver Island, in British Columbia, Canada. This device is a Accelerometer. Accelerometers are instruments that measure accelerations. Acceleration can be static such as gravity pulling objects toward the earth, or dynamic as caused by oscillatory movements of the instrument. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.15468/dl.sn2dmq
title: Occurrence Download

description: A dataset containing 39352 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carduus acanthoides L."
 ]
}

 The dataset includes 39352 records from 540 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043347-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qafepx
title: Occurrence Download

description: A dataset containing 3725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Djibouti",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 3725 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0206081-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.erzknd
title: Occurrence Download

description: A dataset containing 361 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calandrinia acaulis Kunth"
 ]
}

 The dataset includes 361 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024544-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yza5hq
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "TaxonKey is Cheilanthes fragillima F.Muell.",
 "TaxonKey is Hemionitis fragillima (F.Muell.) Christenh"
 ]
 }
 ]
}

 The dataset includes 205 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163984-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg4oif
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1970-2019",
 "HasCoordinate is true",
 "TaxonKey is Chamaedorea affinis Liebm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024545-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9mwwdd
title: Occurrence Download

description: A dataset containing 707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea argentaurata Hallier fil."
 ]
}

 The dataset includes 707 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005287-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o8ty2z
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "Year 1970-2019",
 "HasCoordinate is true",
 "TaxonKey is Chamaedorea fractiflexa Hodel & Cast.Mont",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024546-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wmg4h
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex assiniboinensis W.Boott",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 61 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163918-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hklyxo
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.904296875 22.70728442509737,-74.970703125 29.642231989273455,-74.26757812499999 35.56083263312108,-73.564453125 39.055026060985284,-73.740234375 40.940076402856874,-80.771484375 40.80715862875314,-84.638671875 38.09306758605004,-92.724609375 37.537610029424,-101.865234375 36.696614473939206,-108.369140625 35.98867592117699,-111.00585937499999 22.382589227957155,-108.19335937500001 16.41711901922669,-103.974609375 14.723887876242301,-80.59570312500001 10.95413756650619,-76.904296875 22.70728442509737))",
 "HasCoordinate is true",
 "TaxonKey is Zanthoxylum clava-herculis L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 412 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024547-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wvkuva
title: Occurrence Download

description: A dataset containing 263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex cryptolepis Mack.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 263 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163979-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vy6exe
title: Occurrence Download

description: A dataset containing 6815 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Adiantum L."
 ]
}

 The dataset includes 6815 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024547-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.crk8aq
title: Occurrence Download

description: A dataset containing 723 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex atlantica L.H.Bailey",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 723 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0163923-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1a01ny
title: Occurrence Download

description: A dataset containing 1251811 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunus L."
 ]
}

 The dataset includes 1251811 records from 1408 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024547-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqbojv
title: Occurrence Download

description: A dataset containing 3910 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coniophora puteana (Schumach.) P.Karst."
 ]
}

 The dataset includes 3910 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039738-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b0vraq
title: Occurrence Download

description: A dataset containing 8261132 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 8261132 records from 2184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023371-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tr4ytp
title: Occurrence Download

description: A dataset containing 7820 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 COUNT(*) occurrences
FROM
 occurrence
WHERE
 occurrence.basisofrecord = 'HUMAN_OBSERVATION'
 AND occurrence.countrycode IN ('ES', 'PL')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 2422253 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 2422253 OR CAST(occurrence.kingdomkey AS INTEGER) = 2422253 OR CAST(occurrence.phylumkey AS INTEGER) = 2422253 OR CAST(occurrence.classkey AS INTEGER) = 2422253 OR CAST(occurrence.orderkey AS INTEGER) = 2422253 OR CAST(occurrence.familykey AS INTEGER) = 2422253 OR CAST(occurrence.genuskey AS INTEGER) = 2422253 OR CAST(occurrence.specieskey AS INTEGER) = 2422253)
 AND (occurrence."year" &gt;= 2010 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 7820 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005041-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7924/r45t3wq5m
title: Data and scripts from: Comprehensive profiling of chromatin occupancy dynamics through the cell cycle

description: The occupancy of DNA-binding factors is critical for establishing the chromatin context of DNA-templated processes like transcription and replication. Many studies have investigated relationships between chromatin and transcription in response to genetic and environmental perturbations, but a comprehensive view of the dynamics of chromatin organization and its effect on transcription during the cell-intrinsic process of the cell division cycle has been lacking. In this study, we use the model organism Saccharomyces cerevisiae to investigate the interplay between the cell-cycle–regulated dynamics of chromatin and transcription. In a time series across two consecutive cell cycles, we profile the genome-wide chromatin occupancy landscape with next-generation sequencing of micrococcal nuclease digested chromatin (MNase-seq) while simultaneously profiling the transcriptome with RNA-seq. Surprisingly, among cell-cycle–regulated genes, only a small subset exhibit a change in protein occupancy in their promoter or gene body that strongly mirrors the dynamics of their expression level. However, we separately identify widespread chromatin changes that are not directly linked to cell-cycle–regulated genes, revealing transcription-independent chromatin dynamics during cell-cycle progression. Using entropy as a proxy for nucleosome disorganization, we observe widespread nucleosome disruption in S phase followed by re-organization in M phase, associated with replicative and mitotic activities, respectively. A notable exception is the set of genes expressed in mitosis, which exhibit marked M-phase nucleosome disorganization, likely due to elevated transcription. We develop a Gaussian process statistical model that uses simple features from these chromatin data to improve the prediction of transcript dynamics through the cell cycle. Collectively, our data reveal complex relationships between the dynamics of chromatin occupancy, transcription, and replication during the cell cycle.
DOI: 10.15156/bio/sh1162181.10fu
title: SH1162181.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1162183.10fu
title: SH1162183.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1162184.10fu
title: SH1162184.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1162187.10fu
title: SH1162187.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1162192.10fu
title: SH1162192.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1162194.10fu
title: SH1162194.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.