cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wzh5v456dh.1
title: MMBPSS Code

description: MMBPSS sorting algorithm is proposed by Thabit, K., & Bawazir, A. (2013) in  article titled "A Novel Approach of Selection Sort Algorithm with Parallel Computing and Dynamic Programing Concepts" whose source code was not given. For research I have write code for MMBPSS algorithm.
DOI: 10.17632/xjzrzkgkbb.1
title: MPIS: a Scale for the Evaluation of Aesthetic Prejudice

description: One important forensic activity is represented by an assessment of aesthetic injury where expert criteria and analysis are insufficiently outlined due to the subjective elements related to the traumatized victim. Unesthetic morphological changes can occur due to various circumstances and can be represented by bumps, bodily injury, intentional or culpable acts committed in the Penal Code, resulting in permanent unesthetic morphological scarring.
DOI: 10.17632/mgsvpzzfg8.2
title: RawDataSet_MRI_MCS

description: ABSTRACT: The purpose of this study is to utilize a Monte-Carlo Simulation (MCS) to study the behaviour of water diffusion within the white matter to have a better understanding of the ultrahigh-b DWI (UHb-DWI) signal-b of spinal cord white matter. Recently, UHb-DWI method presented a novel biomarker with very high specificity to demyelination in the cervical spinal cord. It is an advanced version of diffusion-tensor MRI (DTI) and diffusion-kurtosis MRI (DKI) with greatly simplified data acquisition. While conventional DTI relies on the water diffusion within the extra-axonal (EA) space, UHb-DWI provides information about water exchange across the myelin sheath as well as intra-axonal (IA) and EA spaces. The MCS of the water diffusion within the one-dimensional white-matter, such as spinal cord and optic nerve, has been very helpful to understand the deep microscopical environment with different pathology in active lesion of the cervical spinal cord (CSC) in patients with multiple sclerosis (MS). MCS experiment was performed with various degrees of demyelination and axonal loss. The measured UHb-DWI signal from the active lesion and normal-appearing white-matter region MS CSC were matched to the signal-b curves, which were numerically synthesized for various fractions of demyelination and axonal loss, to search for the best matching curve. Although we present the date from the cervical spinal cord of MS CSC, the method can be applied to other white-matter diseases, such as amyotrophic lateral sclerosis (ALS) and degenerative cervical myelopathy (DCM) as well.

DATA DESCRIPTION: There are two raw data sets: (1) diffusion-weighted MRI data and (2) Numerical Monte-Carlo Simulation (MCS) data. Raw diffusion MRI data were collected with 8 signal averages, of which individual average image is stored in its own DICOM file, therefore one needs to average over the average count before further analysis. Each data set contains two folders: (a) UHbDWI_b0 for estimating T1 and (b) UHbDWI_bMax_7384, UHb-DWI data measured with the maximum b of 7384 s/mm2 along direction perpendicular to the nerve direction. MCS data can be processed using the included processing software, written in Python 3.x.Signal-b curve can be generated using these MCS data and software for diffusion gradient applied along angle from the fiber direction, for instance 0o for axial DWI and 90o for radial DWI.
DOI: 10.17632/jfc3n6rwh3.1
title: Conjugated bile acids are depleted during hypertension, nutritional  rescue of which lowers blood pressure

description: Hypertension is the largest risk factor affecting global mortality. Despite available medications, uncontrolled hypertension is on the rise, whereby there is an urgent need to develop novel and sustainable therapeutics. Because gut microbiota is now recognized as an important entity in blood pressure regulation, one such new avenue is to target the gut-liver axis wherein metabolites are transacted via host-microbiota interactions. Knowledge on which metabolites within the gut-liver axis regulate blood pressure is largely unknown. To address this, we analyzed bile acid profiles of both human and hypertensive rat models and report that conjugated bile acids are inversely correlated with blood pressure in humans and rats. Notably, intervening with taurine rescued bile acid conjugation and reduced blood pressure in hypertensive rats. Subsequently, untargeted metabolomics uncovered lower energy metabolism following conjugation of bile acids as a mechanism alleviating high blood pressure. Together, this work reveals conjugated bile acids as nutritionally re-programmable anti-hypertensive metabolites.
DOI: 10.17632/x3gm8dnhpt.1
title: Geographical Indication Agri-food Project

description: This work sook to map the commerce of these products on retail supermarkets and hypermarkets through online shopping. The research contemplates four of the major four major grocery retail supermarkets that had an active and functional website for online shopping for the data collection. Therefore, this work went through four supermarkets in each country of Mercosur, totalizing 16 supermarkets. In the EU, the investigation went through four supermarkets' websites in seven countries, totalizing 28 supermarkets.
DOI: 10.17632/ny3bgz5mmv.1
title: Dataset for publication titled: Framing “„Verkehrs- /Mobilitätswende”“ in Germany 2020: public communication of industry, science, media, and policy

description: This dataset forms the basis of the upcoming publication titled "Framing „Verkehrs- /Mobilitätswende“ in Germany 2020: public communication of industry, science, media, and policy". We first identified representatives of industry, science, policy, and media in Germany. Employing qualitative content analysis, we then screened 325 public documents according to the elements of the framing approach problem definition, causal interpretation, moral evaluation, and treatment recommendation. According to the definition of a socio-technical regime (Geels, 2010, 2012), we chose industry, science, politics, and culture as established actors within the regime of automobility in Germany. For every chosen actor, exemplary representatives were then were identified for industry, science, politics and culture.
Industry
Having the highest market share  in 2019 and based on their importance for the automotive regime (Kords, 2020; Schippl & Truffer, 2020), the two German car manufacturers VW and BMW were chosen as representatives for industry. In addition, representing the automotive suppliers, Bosch and Continental, were selected as companies with the highest sales in the German automotive industry (Automobil Industrie, 2019).
Science
The interdisciplinary bibliographic databases Scopus and ScienceDirect were included in our study. In addition, the online database FIDmove was selected for the analysis, as it focuses on the interdisciplinary, scientific literature covering on traffic and mobility research.
Politics
According to Kern and Rogge (2018), point out the common ground of policy analyses within socio-technical transformation processes share common ground in thatconsists of the fact that there is a fundamental interest within the various theoretical and empirical approaches to identify the, which political actors which are involved in political decision making. For our investigation, the parties currently holding seats in the German Bundestag (AfD, FDP, CDU/CSU, Bündnis 90/Die Grünen, SPD, Die Linke), legitimized by democratic elections, were selected for the actor politics. In addition, due to their direct responsibility for the areas of transport and mobility, the Committee on Transport and Digital Infrastructure in the German Bundestag (AVI) and the Federal Ministry of Transport and Digital Infrastructure (BMVI) were includedintegrated within the study.
Culture
We chose mass media as representatives of culture, specifically national daily newspapers: die tageszeitung (taz), Süddeutsche Zeitung (SZ), Frankfurter Allgemeine Zeitung (FAZ), and Die Welt.
DOI: 10.17632/9tft3vz5tm.3
title: A Deep Learning and XGBoost-based Method for Predicting Protein-protein Interaction Sites 

description: local_feature_training_set.csv: Preprocessing data of feature extractor contains 65869 rows and 344 columns data. The first 343 columns represent feature and the last column represent label (The CSV file contains row indexes) 

local_feature_testing_set.csv: Preprocessing data of feature extractor contains 11791 rows and 344 columns data. The first 343 columns represent feature and the last column represent label (The CSV file contains row indexes)

global&local_feature_training_set.csv: Preprocessing data of feature extractor contains 65869 rows and 1028 columns data. The first 1027 columns represent feature and the last column represent label (The CSV file contains row indexes)

global&local_feature_testing_set.csv: Preprocessing data of feature extractor contains 11791 rows and 1028 columns data. The first 1027 columns represent feature and the last column represent label(The CSV file contains row indexes) 

raw_feature_training_set.csv: raw feature data (secondary structure, raw protein sequence, position specific scoring matrix feature)  contains 65869 rows and 24844 columns data. The first 24843 columns represent feature and the last column represent label.

raw_feature_testing_set.csv: raw feature data (secondary structure, raw protein sequence, position specific scoring matrix feature)  contains 11791 rows and 24844 columns data. The first 24843 columns represent feature and the last column represent label.
DOI: 10.5281/zenodo.5420327
title: Linear-time Temporal Logic guided Greybox Fuzzing

description: The LTL-Fuzzer tool, built on top of the AFL fuzzer, is found to be effective in detecting bugs in well-known protocol implementations, such as OpenSSL and Telnet. We use LTL-Fuzzer to reproduce known vulnerabilities (CVEs), to find new or zero-day bugs by checking properties extracted from RFCs (for which CVEs have been assigned), and to find violations of both safety as well as liveness properties in real-world protocol implementations. This package contains the LTL-Fuzzer tool and data-set in our experiments.
DOI: 10.6084/m9.figshare.16567326
title: Supplementary Material for: Comparison of the Previous and Current Trauma-Related Shock Classifications: A Retrospective Cohort Study from a Level I Trauma Center

description: <b><i>Purpose:</i></b> The aim was to examine the predictive value of the hypovolemic shock classification currently accepted by the Advanced Trauma Life Support (ATLS) program over the previous one, which used only vital signs (VS) for patient allocation. The primary outcome was 30-day mortality; as secondary outcome, heart rate (HR), systolic blood pressure (SBP), Glasgow Coma Scale (GCS) and base deficit (BD) data were compared and investigated in terms of mortality prediction. <b><i>Methods:</i></b> Retrospective analysis at a level I trauma center between 2014 and 2019. Adult patients treated by trauma teams were allocated into severity classes (I–IV) based on the criteria of the current and previous ATLS classifications, respectively. The prognostic values for the classifications were determined with Fisher’s exact test and χ<sup>2</sup> test for independence, and compared with the 2-proportion Z test. The individual variables were analyzed with receiver-operating characteristic (ROC) analyses. <b><i>Results:</i></b> A total of 156 patients met the inclusion criteria. Mortality was effectively predicted by both classifications, and there was no statistically significant difference between the predictive performances. According to ROC analyses, GCS, BD and SBP had significant prognostic values while HR change was ineffective in this regard. <b><i>Conclusions:</i></b> The currently used ATLS shock classification does not appear to be superior to the VS-based previous classification. GCS, BD and SBP are useful parameters to predict the prognosis. Changes in HR do not reflect the clinical course accurately; thus, further studies will be needed to determine the value of this parameter in trauma-associated hypovolemic-hemorrhagic shock conditions.
DOI: 10.6084/m9.figshare.16567326.v1
title: Supplementary Material for: Comparison of the Previous and Current Trauma-Related Shock Classifications: A Retrospective Cohort Study from a Level I Trauma Center

description: <b><i>Purpose:</i></b> The aim was to examine the predictive value of the hypovolemic shock classification currently accepted by the Advanced Trauma Life Support (ATLS) program over the previous one, which used only vital signs (VS) for patient allocation. The primary outcome was 30-day mortality; as secondary outcome, heart rate (HR), systolic blood pressure (SBP), Glasgow Coma Scale (GCS) and base deficit (BD) data were compared and investigated in terms of mortality prediction. <b><i>Methods:</i></b> Retrospective analysis at a level I trauma center between 2014 and 2019. Adult patients treated by trauma teams were allocated into severity classes (I–IV) based on the criteria of the current and previous ATLS classifications, respectively. The prognostic values for the classifications were determined with Fisher’s exact test and χ<sup>2</sup> test for independence, and compared with the 2-proportion Z test. The individual variables were analyzed with receiver-operating characteristic (ROC) analyses. <b><i>Results:</i></b> A total of 156 patients met the inclusion criteria. Mortality was effectively predicted by both classifications, and there was no statistically significant difference between the predictive performances. According to ROC analyses, GCS, BD and SBP had significant prognostic values while HR change was ineffective in this regard. <b><i>Conclusions:</i></b> The currently used ATLS shock classification does not appear to be superior to the VS-based previous classification. GCS, BD and SBP are useful parameters to predict the prognosis. Changes in HR do not reflect the clinical course accurately; thus, further studies will be needed to determine the value of this parameter in trauma-associated hypovolemic-hemorrhagic shock conditions.
DOI: 10.5281/zenodo.4729305
title: Proccessed data for Trend Validation of Metabolic Models Against Measurements Using Indirect Calorimetry

description: A cleaned data set used to validate metabolism models in a muscuskeletal modeling software.<br> The dataset contains 240 rows and 18 columns. Labels: AnyMet = Metabolic output by the modelling software. Calculated as the mean energy cost per repetition [J] . VynMet = Metabolic output by the indirect calorimetry system (Vyntus CPX). Calculated as the mean energy cost per repetition [J]. rest_energy = total energy cost during rest [J]. Measured with Indirect caliometry rest_time = total time of rest [min] Work = Energy cost times the displacement per rep [J]. watt = Work divided by total duration of a repetition [J/s] extension time = duration of the extension part of the movement [s] flexion time = duration of the flexion part of the movement [s] bw = bodyweight [kg] height [m] CV = coefficient of variation for the measured rest_energy. model = model type used for AnyMet. Subject Contraction = Contraction type performed intensity = Intensity to overcome created by the dynamometer. mech_watt_kg = mechcanical watt, watt divided by bodyweight any_met_watt_kg = watt pr kg: (AnyMet / bw) / (extension time + flexion time) vyn_met_watt_kg = watt pr kg: (VynMet / bw) / (extension time + flexion time)
DOI: 10.6084/m9.figshare.16567386
title: Supplementary Material for: The Landscape and Potential Regulatory Mechanism of Lysine 2-Hydroxyisobutyrylation of Protein in End-Stage Renal Disease

description: <b><i>Background:</i></b> Acetylation has a vital role in the pathogenesis of end-stage renal disease (ESRD). Lysine 2-hydroxyisobutyrylation (<i>K</i><sub>hib</sub>) is a novel type of acetylation. In this study, we aimed to reveal the key features of <i>K</i><sub>hib</sub> in peripheral blood monocytes (PBMCs) of patients with ESRD. <b><i>Method:</i></b> We combined TMT labeling with LC-MS/MS analysis to compare <i>K</i><sub>hib</sub> modification of PBMCs between 20 ESRD patients and 20 healthy controls. The pan 2-hydroxyisobutyrylation antibody-based affinity enrichment method was used to reveal the features of <i>K</i><sub>hib</sub>, and the bioinformatics analysis was conducted to analyze the pathology of these <i>K</i><sub>hib</sub>-modified proteins. <b><i>Result:</i></b> Compared to healthy controls, we identified 440 upregulated proteins and 552 downregulated proteins in PBMCs of ESRD, among which 579 <i>K</i><sub>hib</sub> sites on 324 upregulated proteins and 287 <i>K</i><sub>hib</sub> sites on 188 downregulated proteins were identified. The site abundance, distribution, and function of the <i>K</i><sub>hib</sub> protein were further analyzed. The bioinformatics analysis revealed that the Rho/ROCK signaling pathway was highly enriched in ESRD, suggesting that it might contribute to renal fibrosis in ESRD patients. <b><i>Conclusion:</i></b> In this study, we found that <i>K</i><sub>hib</sub>-modified proteins correlated with the occurrence and progression of ESRD.
DOI: 10.5281/zenodo.5420414
title: Average daily air temperature, precipitation and relative sunshine duration for Vallon de Nant catchment, extracted from gridded MeteoSwiss data (1961-2020)

description: This excel file contains time series of daily temperature, precipitation and relative sunshine duration obtained as the spatial average of gridded data sets. The underlying original gridded data sets produced by MeteoSwiss are known as RhiresD, TabsD and SrelD. All meta data are included in the excel file. The data can e.g. be used for hydrological modelling. Comparison to local station data is not included. <strong>This data set as well as the original data set should be cited</strong>.
DOI: 10.6084/m9.figshare.16567518
title: Supplementary Material for: Sight Unseen: Diagnostic Yield and Safety Outcomes of a Novel Multimodality Navigation Bronchoscopy Platform with Real-Time Target Acquisition

description: <b><i>Background:</i></b> Several advanced bronchoscopy platforms are currently available, but the clinical data supporting their use vary. Electromagnetic navigation bronchoscopy (ENB) remains the dominant technology; it is limited by its reliance on preoperative computed tomography, which only approximates patient anatomy during the procedure. Recently, ENB was enhanced with the (1) addition of digital tomosynthesis-based navigation correction, (2) improvements in planning algorithms, and (3) continuous real-time guidance (Illumisite™; Medtronic, Minneapolis, MN, USA). There are currently no clinical data on the diagnostic yield and safety profile of this system. <b><i>Objectives:</i></b> The primary objective of this study is to describe the diagnostic yield of the first 100 pulmonary parenchymal lesions sampled using the multimodality navigation bronchoscopy (MNB) platform. The secondary objective is to describe safety. <b><i>Methods:</i></b> In this single-center prospective observational study, a database was maintained to track patient, procedural, and outcome data for the first 100 consecutive lesions sampled using the MNB platform at an academic quaternary referral center. Descriptive statistics and univariate and multivariate analyses are reported. <b><i>Results:</i></b> The overall diagnostic yield of samples acquired was 79% (79/100). In the cohort where digital tomosynthesis was used, the diagnostic yield was 83% (69/83). Sensitivity for malignancy was 71% (52/73). Overall complication rates were low: pneumothorax (<i>n</i> = 3, 3%) and bleeding requiring intervention (<i>n</i> = 2, 2%). There were no procedural-related hospital admissions. <b><i>Conclusions:</i></b> The MNB system performed favorably. Platform superiority cannot be established without future prospective and comparative studies.
DOI: 10.6084/m9.figshare.16567518.v1
title: Supplementary Material for: Sight Unseen: Diagnostic Yield and Safety Outcomes of a Novel Multimodality Navigation Bronchoscopy Platform with Real-Time Target Acquisition

description: <b><i>Background:</i></b> Several advanced bronchoscopy platforms are currently available, but the clinical data supporting their use vary. Electromagnetic navigation bronchoscopy (ENB) remains the dominant technology; it is limited by its reliance on preoperative computed tomography, which only approximates patient anatomy during the procedure. Recently, ENB was enhanced with the (1) addition of digital tomosynthesis-based navigation correction, (2) improvements in planning algorithms, and (3) continuous real-time guidance (Illumisite™; Medtronic, Minneapolis, MN, USA). There are currently no clinical data on the diagnostic yield and safety profile of this system. <b><i>Objectives:</i></b> The primary objective of this study is to describe the diagnostic yield of the first 100 pulmonary parenchymal lesions sampled using the multimodality navigation bronchoscopy (MNB) platform. The secondary objective is to describe safety. <b><i>Methods:</i></b> In this single-center prospective observational study, a database was maintained to track patient, procedural, and outcome data for the first 100 consecutive lesions sampled using the MNB platform at an academic quaternary referral center. Descriptive statistics and univariate and multivariate analyses are reported. <b><i>Results:</i></b> The overall diagnostic yield of samples acquired was 79% (79/100). In the cohort where digital tomosynthesis was used, the diagnostic yield was 83% (69/83). Sensitivity for malignancy was 71% (52/73). Overall complication rates were low: pneumothorax (<i>n</i> = 3, 3%) and bleeding requiring intervention (<i>n</i> = 2, 2%). There were no procedural-related hospital admissions. <b><i>Conclusions:</i></b> The MNB system performed favorably. Platform superiority cannot be established without future prospective and comparative studies.
DOI: 10.6084/m9.figshare.16567512
title: main_dataset

description: cross country level on differential fertility and education
DOI: 10.6084/m9.figshare.16567512.v1
title: main_dataset

description: cross country level on differential fertility and education
DOI: 10.25318/3610058501-eng
title: Distributions of household economic accounts, wealth, by characteristic, Canada, annual, inactive

description: This table contains data described by the following dimensions (Not all combinations are available): Geography (1 item: Canada);  Statistics (3 items: Value; Distribution of value; Value per household);  Characteristics (13 items: All households; Lowest income quintile; Second income quintile; Third income quintile; ...);  Wealth (11 items: Total assets; Financial assets; Life insurance and pensions; Other financial assets; ...).
DOI: 10.6084/m9.figshare.16567452
title: Supplementary Material for: The Formation of Spore-Like Akinetes: A Survival Strategy of Filamentous Cyanobacteria

description: Some cyanobacteria of the order Nostocales can form akinetes, spore-like dormant cells resistant to various unfavorable environmental fluctuations. Akinetes are larger than vegetative cells and contain large quantities of reserve products, mainly glycogen and the nitrogen storage polypeptide polymer cyanophycin. Akinetes are enveloped in a thick protective coat containing a multilayered structure and are able to germinate into new vegetative cells under suitable growth conditions. Here, we summarize the significant morphological and physiological changes that occur during akinete differentiation and germination and present our investigation of the physiological function of the storage polymer cyanophycin in these cellular processes. We show that the cyanophycin production is not required for formation and germination of the akinetes in the filamentous cyanobacterium <i>Anabaena variabilis</i> ATCC 29413.