cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hj22vq
title: Occurrence Download

description: A dataset containing 608 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia angustifolia Buch.-Ham. ex D.Don"
 ]
}

 The dataset includes 608 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116188-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zyfrwp
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptopus parasimplex H.Hara & H.Ohashi"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116189-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9gnkg
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeranthus talbotii S.Moore"
 ]
}

 The dataset includes 31 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116190-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dncbu5
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synotis yakoensis (Jeffrey ex Diels) C.Jeffrey & Y.L.Chen"
 ]
}

 The dataset includes 47 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116191-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyau4h
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium speciosissimum (C.B.Rob.) Merr."
 ]
}

 The dataset includes 7 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116192-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7xx6e
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptopus parviflorus Franch."
 ]
}

 The dataset includes 301 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116193-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f55mt8
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia arisanensis Hayata"
 ]
}

 The dataset includes 87 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116194-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak9wbg
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synotis yui C.Jeffrey & Y.L.Chen"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116195-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgbmn3
title: Occurrence Download

description: A dataset containing 128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeranthus ukambensis Vatke & O.Hoffm. ex O.Hoffm."
 ]
}

 The dataset includes 128 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116196-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ductkp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium spectabile Merr. & L.M.Perry"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116198-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6je6kk
title: Occurrence Download

description: A dataset containing 605 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptopus simplex D.Don"
 ]
}

 The dataset includes 605 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116199-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vhz6b3
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia asarifolia Franch."
 ]
}

 The dataset includes 32 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116200-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fattch
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeranthus wattii Giess ex Merxm."
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116202-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgtv6y
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synsepalum afzelii (Engl.) T.D.Penn."
 ]
}

 The dataset includes 394 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116201-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xanzys
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium spissifolium (Ridl.) I.M.Turner"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116203-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgu7rr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia assamensis Harry Sm."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116205-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7hbzy
title: Occurrence Download

description: A dataset containing 2312 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptopus streptopoides (Ledeb.) Frye & Rigg"
 ]
}

 The dataset includes 2312 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116204-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc5sd5
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeranthus zavattarii Cufod."
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116206-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2adap
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synsepalum aubrevillei (Pellegr.) Aubrév. & Pellegr."
 ]
}

 The dataset includes 304 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116207-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hdjc6q
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium splendens (Blume) Merr. & L.M.Perry"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116209-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqw7yv
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia banzragczii Sanchir"
 ]
}

 The dataset includes 20 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116211-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tey3uy
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaerobambos hirsuta S.Dransf."
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116212-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qpy84
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Streptosiphon hirsutus Mildbr."
 ]
}

 The dataset includes 20 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116213-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.snqype
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synsepalum batesii (A.Chev.) Aubrév. & Pellegr."
 ]
}

 The dataset includes 6 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116214-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9v4dx2
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium squamatum Merr. & L.M.Perry"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116215-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3895vm
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia beddomei C.B.Clarke"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116216-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h2sv89
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaerobambos philippinensis (Gamble) S.Dransf."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116218-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uerp6a
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synsepalum bequaertii De Wild."
 ]
}

 The dataset includes 19 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116220-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfkn84
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Striga aequinoctialis A.Chev. ex Hutch. & Dalziel"
 ]
}

 The dataset includes 91 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116219-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr9ceb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syzygium sriganesanii K.Ravik. & V.Lakshm."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116221-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq3uk5
title: Occurrence Download

description: A dataset containing 159 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Swertia bifolia Batalin"
 ]
}

 The dataset includes 159 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116222-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cn8rdc
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaerobambos subtilis S.Dransf."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0116223-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sbzlqt
title: Occurrence Download

description: A dataset containing 266400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Freshwater samples in MZNA-INV-FRW: Macroinvertebrate samples from the water quality monitoring network along the Ebro Basin",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 266400 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007878-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kvm8j
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum pernambucense Cogn."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159894-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.etbp8h
title: Occurrence Download

description: A dataset containing 984 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is NatureServe Network Species Occurrence Data",
 "TaxonKey is Brachyramphus marmoratus (J.F.Gmelin, 1789)"
 ]
}

 The dataset includes 984 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059066-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g8ecwm
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mylia taylorii (Hook.) Gray",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 61 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001553-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sad7dx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myosotis ramosissima Rochel ex Schult.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001559-210914110416597/datasets/export for details.
DOI: 10.15468/dl.jsbce6
title: Occurrence Download

description: A dataset containing 7792 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((15.01327 58.53853,15.00262 58.52339,15.01482 58.50918,15.03745 58.50699,15.0473 58.51563,15.03708 58.53205,15.01327 58.53853))"
 ]
}

 The dataset includes 7792 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059067-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm28gv
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oenothera drummondii var. thalassaphila (Brandegee) Munz"
 ]
}

 The dataset includes 51 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007878-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u33kuf
title: Occurrence Download

description: A dataset containing 5217467 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anura"
 ]
}

 The dataset includes 5217467 records from 2386 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043625-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17035952
title: Supplementary Files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen"

description: Supplementary files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen" by Baril, Puccetti, and Croll, 2025. 

 

Abstract:

Transposable elements (TEs) can drive the evolution of host-pathogen interactions and gains in antimicrobial resistance. However, how adaptive TEs arise in populations and historical contingencies affect TE dynamics remains unknown. Fungal pathogens in agriculture provide unique frameworks to address such questions due to the availability of spatially explicit sampling and well-characterized niche conditions. We characterised TE evolutionary dynamics using an extensive intraspecies sampling of 1,953 genomes across the global distribution range of the major fungal wheat pathogen Zymoseptoria tritici. Employing a pangenomic approach, we characterise genomic diversity and benchmark methods to robustly infer TE insertion polymorphism, before systematically assessing TEs as a source of adaptive variation. We annotated ~3.2 million TE loci among genomes, finding substantial variation in TE content within and among populations. TE activity surged during the pathogen's expansion from its centre of origin in the Middle East, with unique TE activity profiles arising in derived populations. TE-mediated adaptation emerged from distinct waves of TE mobilization. The highest rates of TE activity were observed over timescales as short as 25 years. 45 TE loci showing local adaptation signatures within 1kb of 49 host genes were identified, with adaptive TE insertions likely related to adaptation to antifungals and the plant host environment. This work highlights the power of vast genomic datasets to unravel intraspecies TE invasion histories and pinpoint factors likely driving recent adaptation. This argues for a shift in focus to incorporate deep population-level TE activity surveys in our pursuit to uncover the molecular drivers of adaptive evolution.

 

README contains description of files contained in this repository. All supplementary materials related to this manuscript are supplied in this repository.
DOI: 10.15468/dl.bukmac
title: Occurrence Download

description: A dataset containing 41828 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-1.94229 47.37833,-1.94552 47.37479,-1.9481 47.37096,-1.95 47.36683,-1.95122 47.36245,-1.95175 47.35781,-1.95159 47.35294,-1.95074 47.34787,-1.9492 47.34261,-1.94699 47.33719,-1.94411 47.33163,-1.94057 47.32595,-1.93639 47.32018,-1.93159 47.31434,-1.92619 47.30846,-1.92021 47.30256,-1.91367 47.29667,-1.90661 47.29082,-1.89906 47.28502,-1.89104 47.2793,-1.8826 47.27369,-1.87377 47.26821,-1.86458 47.26289,-1.85508 47.25774,-1.8453 47.25279,-1.8353 47.24806,-1.82511 47.24357,-1.81477 47.23935,-1.80433 47.23539,-1.79383 47.23174,-1.78332 47.22839,-1.77285 47.22537,-1.76245 47.22269,-1.75217 47.22035,-1.74207 47.21837,-1.73217 47.21676,-1.72252 47.21553,-1.71316 47.21467,-1.70414 47.2142,-1.69548 47.21412,-1.68723 47.21442,-1.67943 47.2151,-1.6721 47.21617,-1.66528 47.21761,-1.659 47.21943,-1.65328 47.22161,-1.64814 47.22414,-1.64362 47.22702,-1.63972 47.23023,-1.63647 47.23376,-1.63388 47.23759,-1.63196 47.24171,-1.63072 47.24609,-1.63016 47.25073,-1.63029 47.25559,-1.63111 47.26067,-1.63261 47.26593,-1.63479 47.27136,-1.63764 47.27693,-1.64114 47.28262,-1.64528 47.2884,-1.65005 47.29425,-1.65542 47.30014,-1.66138 47.30605,-1.66788 47.31196,-1.67492 47.31783,-1.68245 47.32364,-1.69045 47.32937,-1.69888 47.335,-1.70771 47.34049,-1.7169 47.34583,-1.7264 47.35098,-1.73618 47.35594,-1.7462 47.36068,-1.75641 47.36517,-1.76677 47.36941,-1.77723 47.37336,-1.78775 47.37702,-1.79829 47.38037,-1.8088 47.38339,-1.81923 47.38607,-1.82954 47.3884,-1.83968 47.39036,-1.84962 47.39196,-1.8593 47.39319,-1.86869 47.39403,-1.87775 47.39449,-1.88643 47.39456,-1.8947 47.39425,-1.90253 47.39355,-1.90988 47.39247,-1.91671 47.39101,-1.92301 47.38918,-1.92874 47.38698,-1.93387 47.38444,-1.9384 47.38155,-1.94229 47.37833)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862"
 ]
}

 The dataset includes 41828 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018792-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.