cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8188965
title: WikiMed-DE

description: WikiMed-DE is a silver-standard, automatically annotated biomedical entity linking dataset for the German language. WikiMed-DE encompasses a substantial collection of 53,981 articles from the German Wikipedia annotated with 1,951,081 mentions corresponding to 317,010 unique mention URLs. The hyperlinks of Wikipedia articles are used to connect concept mentions to Wikidata and transitively to three biomedical concept IDs: the Concept Unique Identifier from the Unified Medical Language System, the MeSH ID from Medical Subject Headings hierarchy, and the DOID from the Disease Ontology. A curated subset, WikiMed-DE-BEL, is released as a ready-to-use benchmark for biomedical entity linking in German. It features the same number of articles as WikiMed-DE, but only the highest-quality information is retained: 413,913 mentions corresponding to 35,012 unique concepts.
DOI: 10.5281/zenodo.8188986
title: MainstreamBIO_Needs Analysis_Dataset1_2023.02.28_v1

description: The dataset comprises the findings of an online survey that aimed to assess awareness levels and perceptions related to the bioeconomy, biobased solutions, products, and nutrient circularity practices among a diverse group of stakeholders, including consumers. The results indicate notable variations both across the targeted countries and among different key-stakeholder groups. Concerning awareness and perceptions of bioeconomy development and biobased products and solutions, the primary challenges and requirements seem to revolve around economic factors, such as the lack of investments and limited access to essential finance. However, other significant determinants also play a role, including the absence of appropriate policy and regulatory frameworks governing the bioeconomy sector and issues pertaining to stakeholder engagement, particularly concerning a lack of relevant awareness.
DOI: 10.5281/zenodo.8188985
title: MainstreamBIO_Needs Analysis_Dataset1_2023.02.28_v1

description: The dataset comprises the findings of an online survey that aimed to assess awareness levels and perceptions related to the bioeconomy, biobased solutions, products, and nutrient circularity practices among a diverse group of stakeholders, including consumers. The results indicate notable variations both across the targeted countries and among different key-stakeholder groups. Concerning awareness and perceptions of bioeconomy development and biobased products and solutions, the primary challenges and requirements seem to revolve around economic factors, such as the lack of investments and limited access to essential finance. However, other significant determinants also play a role, including the absence of appropriate policy and regulatory frameworks governing the bioeconomy sector and issues pertaining to stakeholder engagement, particularly concerning a lack of relevant awareness.
DOI: 10.6084/m9.figshare.23702582
title: SIRS, SOFA, qSOFA, and NEWS in the diagnosis of sepsis and prediction of adverse outcomes: a systematic review and meta-analysis

description: We compared Systemic Inflammatory Response Syndrome (SIRS), Sequential Organ Failure Assessment (SOFA), Quick Sepsis-related Organ Failure Assessment (qSOFA), and National Early Warning Score (NEWS) for sepsis diagnosis and adverse outcomes prediction. Clinical studies that used SIRS, SOFA, qSOFA, and NEWS for sepsis diagnosis and prognosis assessment were included. Data were extracted, and meta-analysis was performed for outcome measures, including sepsis diagnosis, in-hospital mortality, 7/10/14-day mortality, 28/30-day mortality, and ICU admission. Fifty-seven included studies showed good overall quality. Regarding sepsis prediction, SIRS demonstrated high sensitivity (0.85) but low specificity (0.41), qSOFA showed low sensitivity (0.42) but high specificity (0.98), and NEWS exhibited high sensitivity (0.71) and specificity (0.85). For predicting in-hospital mortality, SOFA demonstrated the highest sensitivity (0.89) and specificity (0.69). In terms of predicting 7/10/14-day mortality, SIRS exhibited high sensitivity (0.87), while qSOFA had high specificity (0.75). For predicting 28/30-day mortality, SOFA showed high sensitivity (0.97) but low specificity (0.14), whereas qSOFA displayed low sensitivity (0.41) but high specificity (0.88). NEWS independently demonstrates good diagnostic capability for sepsis, especially in high-income countries. SOFA emerges as the optimal choice for predicting in-hospital mortality and can be employed as a screening tool for 28/30-day mortality in low-income countries.
DOI: 10.6084/m9.figshare.23702582.v1
title: SIRS, SOFA, qSOFA, and NEWS in the diagnosis of sepsis and prediction of adverse outcomes: a systematic review and meta-analysis

description: We compared Systemic Inflammatory Response Syndrome (SIRS), Sequential Organ Failure Assessment (SOFA), Quick Sepsis-related Organ Failure Assessment (qSOFA), and National Early Warning Score (NEWS) for sepsis diagnosis and adverse outcomes prediction. Clinical studies that used SIRS, SOFA, qSOFA, and NEWS for sepsis diagnosis and prognosis assessment were included. Data were extracted, and meta-analysis was performed for outcome measures, including sepsis diagnosis, in-hospital mortality, 7/10/14-day mortality, 28/30-day mortality, and ICU admission. Fifty-seven included studies showed good overall quality. Regarding sepsis prediction, SIRS demonstrated high sensitivity (0.85) but low specificity (0.41), qSOFA showed low sensitivity (0.42) but high specificity (0.98), and NEWS exhibited high sensitivity (0.71) and specificity (0.85). For predicting in-hospital mortality, SOFA demonstrated the highest sensitivity (0.89) and specificity (0.69). In terms of predicting 7/10/14-day mortality, SIRS exhibited high sensitivity (0.87), while qSOFA had high specificity (0.75). For predicting 28/30-day mortality, SOFA showed high sensitivity (0.97) but low specificity (0.14), whereas qSOFA displayed low sensitivity (0.41) but high specificity (0.88). NEWS independently demonstrates good diagnostic capability for sepsis, especially in high-income countries. SOFA emerges as the optimal choice for predicting in-hospital mortality and can be employed as a screening tool for 28/30-day mortality in low-income countries.
DOI: 10.25345/c5zp3w97d
title: MassIVE MSV000092532 - Unwrapping the (glyco-)lipidome in the microalgae Microchloropsis gaditana: effects of eco-friendly extraction methods
title: Untargeted lipidomics of eco-friendly microalgal lipid extract
DOI: 10.5281/zenodo.8175235
title: Developing Kalanchoë blossfeldiana as a resource for comparatively studying C3 and crassulacean acid metabolism tissues

description: Reviewer Link
DOI: 10.5281/zenodo.8175234
title: Developing Kalanchoë blossfeldiana as a resource for comparatively studying C3 and crassulacean acid metabolism

description: Reviewer Link
DOI: 10.5281/zenodo.8188997
title: Developing Kalanchoë blossfeldiana as a resource for comparatively studying C3 and crassulacean acid metabolism

description: Reviewer Link
DOI: 10.5281/zenodo.8188996
title: MainstreamBIO_Needs Analysis_Dataset2_2023.02.28_v1

description: The dataset comprises the outcomes of 35 semi-structured interviews conducted with renowned experts in the bioeconomy domain. The primary objective of these interviews was to obtain comprehensive insights into various aspects of local bioeconomy development and its social acceptance. The experts were probed on multiple dimensions, including the prevailing framework conditions, existing needs, challenges, and market conditions related to bioeconomy practices. Furthermore, the interviews also delved into exploring nutrient recycling practices in the context of bioeconomy development. These in-depth conversations with experts were intended to gain a profound understanding of the subject matter and gather valuable information to advance research and decision-making in this field.
DOI: 10.5281/zenodo.8188995
title: MainstreamBIO_Needs Analysis_Dataset2_2023.02.28_v1

description: The dataset comprises the outcomes of 35 semi-structured interviews conducted with renowned experts in the bioeconomy domain. The primary objective of these interviews was to obtain comprehensive insights into various aspects of local bioeconomy development and its social acceptance. The experts were probed on multiple dimensions, including the prevailing framework conditions, existing needs, challenges, and market conditions related to bioeconomy practices. Furthermore, the interviews also delved into exploring nutrient recycling practices in the context of bioeconomy development. These in-depth conversations with experts were intended to gain a profound understanding of the subject matter and gather valuable information to advance research and decision-making in this field.
DOI: 10.5281/zenodo.7928804
title: Acoustic measurements in the ancient open-air theatre of Tyndaris

description: The data set represents the measured impulse response in the ancient Theatre of Tyndaris performed in September 2015 by the Applied Acoustics Research Group of the Department of Energy of the Politecnico di Torino. - Measurement set-up has been described in https://www.mdpi.com/2076-3417/10/16/5680 - Receiver and source positions have been shown in Figure 2 in https://www.mdpi.com/2076-3417/10/16/5680
DOI: 10.5281/zenodo.7928803
title: Acoustic measurements in the ancient open-air theatre of Tyndaris

description: The data set represents the measured impulse response in the ancient Theatre of Tyndaris performed in September 2015 by the Applied Acoustics Research Group of the Department of Energy of the Politecnico di Torino. - Measurement set-up has been described in https://www.mdpi.com/2076-3417/10/16/5680 - Receiver and source positions have been shown in Figure 2 in https://www.mdpi.com/2076-3417/10/16/5680
DOI: 10.57745/9nggmr
title: Species_abundance_table_PRJEB6337.csv

description: :unav
DOI: 10.57745/g8qq0r
title: Genus_and_species_catalogue_PRJEB6337.tab

description: :unav
DOI: 10.20351/29gd20230602
title: ECOREST_AUV Cruise, RV García del Cid

description: Oceanographic data acquired during the ECOREST_AUV Cruise (29GD20230602) on board the Research Vessel García del Cid in 2023.
DOI: 10.6084/m9.figshare.21897363
title: Demagnetisation experiments raw data

description: This folder presents the measurement files of the alternating field (AF) and thermal (TH) demagnetisation experiments. The applied treatment is indicated with the name of the files. The information shown depends on the software and the settings of the laboratory in which the measurements were performed. Laboratory Grubenhagen of the Leibniz Institute for Applied Geophysics (*.DII files): sequential number, sample name, measurement type, measurement step, K (without specific meaning), Sm/M parameter, Intensity (mA/m), Inclination, Declination, X intensity, Y intensity, Z intensity Ebarhard Karls Universität Tuebingen (*.DAT files) showing "Sample ID", "AF Z" or "Temp C", "Intensity", "Declination: Unrotated", "Inclination: Unrotated" (background and tray correction applied as included in the measurement software longcore of 2G Enterprise) Eidgenössische Technische Hochschule ETH Zurich (*.DAT files) showing "Sample ID", "Intensity (emu)", "X corr", "Y corr", "Z corr", "Declination: Unrotated", "Inclination: Unrotated", "X Intensity", "Y Intensity", "Z Intensity", "X drift", "Y drift", "Z drift", "TH" (= Temperature step in °C), "comment", " AF Z (=AF step in Oe)" in different orders. During thermal demagnetisation the positions of the samples in the oven was not changed. The magnetic susceptibility was monitored after each thermal heating step. The values are provided in the files "MS(T)_Demag_Tuebingen.xlsx" and "MS(T)_Demag_Zurich.xlsx".
DOI: 10.6084/m9.figshare.23790675
title: Hybrid nanoparticle-DNAzyme electrochemical biosensor for the detection of divalent heavy metal ions and Cr3+

description: Measurement data for the following publication: Hybrid nanoparticle-DNAzyme electrochemical biosensor for the detection of divalent heavy metal ions and Cr3+
DOI: 10.6084/m9.figshare.23790675.v1
title: Hybrid nanoparticle-DNAzyme electrochemical biosensor for the detection of divalent heavy metal ions and Cr3+

description: Measurement data for the following publication: Hybrid nanoparticle-DNAzyme electrochemical biosensor for the detection of divalent heavy metal ions and Cr3+
DOI: 10.6084/m9.figshare.21897114
title: Magnetic fabric

description: This dataset includes measurement data files of ten analysed samples of the sites UEK and EGG. Following analyses were performed: 1) Anisotropy of magnetic susceptiblility (AMS) 2) Anisotropy of anhysterertic remanent magnetisation (AARM) 3) Anisotroppy of partial isothermal remanent magnetisation (ApIRM) 4) Anisotroppy of full isothermal remanent magnetisation (AIRM) The measurement results are summarised in the provided excel file. <br> Please note: The file HDS_AMS_specimenCoordinates.asc show the samples in specimen coordinates. Only the excel file provide the data in specimen coordinates (spec) and corrected for field orientation (geo). The HDS_AMS.ams file can be used with the software Anisoft5 by AGICO.
DOI: 10.6084/m9.figshare.21897114.v1
title: Magnetic fabric

description: This dataset includes measurement data files of ten analysed samples of the sites UEK and EGG. Following analyses were performed: 1) Anisotropy of magnetic susceptiblility (AMS) 2) Anisotropy of anhysterertic remanent magnetisation (AARM) 3) Anisotroppy of partial isothermal remanent magnetisation (ApIRM) 4) Anisotroppy of full isothermal remanent magnetisation (AIRM) The measurement results are summarised in the provided excel file. <br> Please note: The file HDS_AMS_specimenCoordinates.asc show the samples in specimen coordinates. Only the excel file provide the data in specimen coordinates (spec) and corrected for field orientation (geo). The HDS_AMS.ams file can be used with the software Anisoft5 by AGICO.
DOI: 10.6084/m9.figshare.22022414.v1
title: Sample lists, measurements and results

description: Presented are sample lists and measurement results of discrete samples of the Deckenschotter. <br> <strong>HDS+TDS_Sample-Results.xlsx</strong> presents the list of analysed discrete samples of the TDS followed by the HDS, each sorted alphabetically. It shows following data: Sample name Deckenschotter unit Site abbreviation Reference depth Field correction value applicable to Agico orientation parameter 12 0 12 0 Estimated volume of the sample Mass of the sample Magnetic susceptibility (SI unit) Mass specific magnetic susceptiblity (10<sup>-8</sup> m<sup>3</sup> kg<sup>-1</sup>) Frequentcy dependency of magnetic susceptibility (%). The low field and high field measurements are provided in a separate file (Kappa-F.csv) NRM (A m<sup>2</sup> kg<sup>-1</sup>) Maximal AF and/or TH demagnetisation step applied Resons for rejection of samples and further comments. The reasons for rejection of samples are briefly given in code: *1 = unstable magnetisation direction; *2 = inconclusive or unexpected vector direction; *3 = low stability/ unreliable carrier; *4 = device failure/ overprint assumed; *5 = disturbed sediment.a list of all subsamples PCA results (ChRM declination, ChRM inclination, Maximum angular deviation MAD, steps used for determination) Frequency dependence of magnetic susceptibility was measured only in the initial phase of this study. All data gained is provided in the file <strong>Kappa-F.csv</strong>. <br> The properties of the VSM samples, the processing information and the hysteresis parameters are presented in the file <strong>HysteresisParameter.csv</strong>. The hysteresis parameters were determined from the corrected hysteresis loops and the uncorrected backfield curves. <br> <br>
DOI: 10.6084/m9.figshare.22022414
title: Sample lists, measurements and results

description: Presented are sample lists and measurement results of discrete samples of the Deckenschotter. <br> <strong>HDS+TDS_Sample-Results.xlsx</strong> presents the list of analysed discrete samples of the TDS followed by the HDS, each sorted alphabetically. It shows following data: Sample name Deckenschotter unit Site abbreviation Reference depth Field correction value applicable to Agico orientation parameter 12 0 12 0 Estimated volume of the sample Mass of the sample Magnetic susceptibility (SI unit) Mass specific magnetic susceptiblity (10<sup>-8</sup> m<sup>3</sup> kg<sup>-1</sup>) Frequentcy dependency of magnetic susceptibility (%). The low field and high field measurements are provided in a separate file (Kappa-F.csv) NRM (A m<sup>2</sup> kg<sup>-1</sup>) Maximal AF and/or TH demagnetisation step applied Resons for rejection of samples and further comments. The reasons for rejection of samples are briefly given in code: *1 = unstable magnetisation direction; *2 = inconclusive or unexpected vector direction; *3 = low stability/ unreliable carrier; *4 = device failure/ overprint assumed; *5 = disturbed sediment.a list of all subsamples PCA results (ChRM declination, ChRM inclination, Maximum angular deviation MAD, steps used for determination) Frequency dependence of magnetic susceptibility was measured only in the initial phase of this study. All data gained is provided in the file <strong>Kappa-F.csv</strong>. <br> The properties of the VSM samples, the processing information and the hysteresis parameters are presented in the file <strong>HysteresisParameter.csv</strong>. The hysteresis parameters were determined from the corrected hysteresis loops and the uncorrected backfield curves. <br> <br>
DOI: 10.6084/m9.figshare.22047050
title: Temperature dependency of magnetic susceptibility

description: The measurement files, screenshots of the plots and the measurement data of the analyses of temperature dependence of magnetic susceptibility of raw material of ten selected samples of the HDS are presented. If the data are used, please indicate the following study to which these data are an addendum: SCHEIDT, S., BUECHI, M. W., EGLI, R., BIEDERMANN, A. R. & DEPLAZES, G. 2023. Palaeomagnetic and mineral magnetic analyses of the Deckenschotter of northern Switzerland and southern Germany. Swiss Journal of Geosciences. doi: https://doi.org/10.1186/s00015-023-00439-y <br> The measurements were conducted using the Agico MFK-1 device of the magnetic laboratory Grubenhagen (Leibniz Institute for Applied Geophysics (LIAG), Hannover, Germany). <br> The *.cur data can be viewed by the software Cureval8 by Agico. Corrections for the furnance were made with this software using the file EMPTYF6.cur. . The file T-Susc.Data.xlsx lists all measurement data. Each sample is represented by three columns: TEMP = the temperatrue in °C TSUSC = the magnetic susceptibility TSUScor = the magnetic susceptibility corrected for the empty furnance
DOI: 10.6084/m9.figshare.22047050.v1
title: Temperature dependency of magnetic susceptibility

description: The measurement files, screenshots of the plots and the measurement data of the analyses of temperature dependence of magnetic susceptibility of raw material of ten selected samples of the HDS are presented. If the data are used, please indicate the following study to which these data are an addendum: SCHEIDT, S., BUECHI, M. W., EGLI, R., BIEDERMANN, A. R. & DEPLAZES, G. 2023. Palaeomagnetic and mineral magnetic analyses of the Deckenschotter of northern Switzerland and southern Germany. Swiss Journal of Geosciences. doi: https://doi.org/10.1186/s00015-023-00439-y <br> The measurements were conducted using the Agico MFK-1 device of the magnetic laboratory Grubenhagen (Leibniz Institute for Applied Geophysics (LIAG), Hannover, Germany). <br> The *.cur data can be viewed by the software Cureval8 by Agico. Corrections for the furnance were made with this software using the file EMPTYF6.cur. . The file T-Susc.Data.xlsx lists all measurement data. Each sample is represented by three columns: TEMP = the temperatrue in °C TSUSC = the magnetic susceptibility TSUScor = the magnetic susceptibility corrected for the empty furnance
DOI: 10.6084/m9.figshare.21695990
title: VSM measurement raw data

description: The dataset include csv-file exports of the hysteresis, IRM and backfield measurements conducted with the model 8604 Lakeshore VSM at the University of Cologne. The header in each file show measurement details. Please note: All hysteresis measurements are corrected for pole saturation by substracting the identically measured hysteresis of holmium oxide from the measurement data. Additionally, a fieldOffset correction was performed by the measurement program of Lake Shore, which may shift the hysteresis slightly along the X-axis. The weight of all samples is not correctly shown in the IRM-BF files but in the excel table "hysteresis parameters" in the folder "VSM measurement data analysed" of this data publication. The true volume of the samples remains unknown. If a (2) occurs behind the measurement, the first measurement was not successful and a second, identical one was performed using the same sample.
DOI: 10.6084/m9.figshare.23790717
title: Supplementary Material for: Left Main Coronary Artery Revascularization in Patients with Impaired Renal Function; Percutaneous Coronary Intervention vs. Coronary Artery Bypass Grafting

description: Introduction: The evidence about the optimal revascularization strategy in patients with left-main coronary artery (LMCA) disease and impaired renal function is limited. Thus, we aimed to compare the outcomes of LMCA disease revascularization (PCI vs. CABG) in patients with and without impaired renal function. Methods: This retrospective cohort study included 2138 patients recruited from 14 centers between 2015 to 2019. We compared patients with impaired renal function who had PCI (n= 316) to those who had CABG (n= 121) and compared patients with normal renal function who had PCI (n= 906) to those who had CABG (n= 795). The study outcomes were in-hospital and follow-up major adverse cardiovascular and cerebrovascular events (MACCE). Results: Multivariable logistic regression analysis showed that the risk of in-hospital MACCE was significantly higher in CABG compared to PCI in patients with impaired renal function [OR: 8.13 (95% CI: 4.19- 15.76), P&lt;0.001] and normal renal function [OR: 2.59 (95% CI: 1.79- 3.73); P&lt;0.001]. There were no differences in follow-up MACCE between CABG and PCI in patients with impaired renal function [HR: 1.14 (95% CI: 0.71- 1.81), P= 0.585] and normal renal function [HR: 1.12 (0.90- 1.39), P= 0.312]. Conclusions: PCI could have an advantage over CABG in revascularization of LMCA disease in patients with impaired renal function regarding in-hospital MACCE. The follow-up MACCE was comparable between PCI and CABG in patients with impaired and normal renal function.