cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20032103.v1
title: Chicken_FAANG

description: We systematically identified and characterized regulatory elements in the chicken genome by integrating 377 genome-wide sequencing datasets from seven epigenetic marks, chromatin conformation and transcriptome across 23 chicken tissues. And using these data to interpret the complex trait and domestication in chickens.
DOI: 10.5281/zenodo.6625820
title: [IO Islamic 1426] Naḳshbandî Order

description: <strong>Naḳshbandî order.</strong> <strong>This manuscript is now IO Islamic 1426 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 636 here with notations and hyperlinks]</strong>. <br> 636 A very similar work on the Naḳshbandî order, compiled A.H. 947 = A.D. 1540, 1541 (see fol. 1<sup>b</sup>, last line), by Abû al-muḥsin Muḥammad Bâḳir bin Muḥammad ‘Alî, without any special title (on fol. 1<sup>a</sup> it is styled تأريخ غريبه ), in a muḳaddimah, four maḳṣads, and a khâtimah. It differs from the Rashaḥât only in so far, as the biography of the founder of the order, Bahâ-aldîn Muḥammad bin Muḥammad Naḳshband, occupies here the same space as that of ‘Ubaid-allâh Aḥrâr, whose life is the principal theme of the Rashaḥât. Beginning: الحمد لله ربّ العالمين الذى رفع اعلام الشريعة بميامن الخ. . <em>Muḳaddimah</em>. Introduction to the history of the Naḳshbandî order, on fol.2<sup>b</sup>. <em>Maḳṣad</em> <em>I</em>. Shaikhs prior to Bahâ-aldîn, from the prophet and ‘Alî to Naḳshband himself, on fol. 9<sup>a</sup>. <em>Maḳṣad</em> <em>II</em>, in three ḳisms. Life, deeds, sayings, and miracles of Bahâ-aldîn Naḳshband (A.H. 718-791 = A.D. 1318-1389), on fol. 35<sup>a</sup>. <em>Maḳṣad</em> <em>III</em>. Shaikhs who lived from Bahâ-aldîn’s time to that of ‘Ubaid-allâh Aḥrâr, on fol. 119<sup>b</sup>. <em>Maḳṣad</em> <em>IV</em>. Life, deeds, sayings, and miracles of Khawâjah ’Ubaid-allâh (A.H. 806-895 = A.D. 1404-1490), on fol. 196<sup>a</sup>, in three marṣads and a khâtimah, the subdivisions quite identical with that in the Rashaḥât. No date. Tenth century. No. 1426, ff. 227, ll. 19; good Nasta’lîḳ; size, 10<sup>3/8</sup> in. by 6<sup>3/8</sup> in.
DOI: 10.5281/zenodo.6625819
title: [IO Islamic 1426] Naḳshbandî Order

description: <strong>Naḳshbandî order.</strong> <strong>This manuscript is now IO Islamic 1426 in the India Office collections.</strong> <strong>[metadata:</strong> <strong>Hermann Ethé</strong><strong><em>, </em></strong><strong><em>Catalogue of Persian Manuscripts in the Library of the India Office,</em></strong> <strong>2 vols. (Oxford: India Office, 1903): volume 1,</strong> <strong>number 636 here with notations and hyperlinks]</strong>. <br> 636 A very similar work on the Naḳshbandî order, compiled A.H. 947 = A.D. 1540, 1541 (see fol. 1<sup>b</sup>, last line), by Abû al-muḥsin Muḥammad Bâḳir bin Muḥammad ‘Alî, without any special title (on fol. 1<sup>a</sup> it is styled تأريخ غريبه ), in a muḳaddimah, four maḳṣads, and a khâtimah. It differs from the Rashaḥât only in so far, as the biography of the founder of the order, Bahâ-aldîn Muḥammad bin Muḥammad Naḳshband, occupies here the same space as that of ‘Ubaid-allâh Aḥrâr, whose life is the principal theme of the Rashaḥât. Beginning: الحمد لله ربّ العالمين الذى رفع اعلام الشريعة بميامن الخ. . <em>Muḳaddimah</em>. Introduction to the history of the Naḳshbandî order, on fol.2<sup>b</sup>. <em>Maḳṣad</em> <em>I</em>. Shaikhs prior to Bahâ-aldîn, from the prophet and ‘Alî to Naḳshband himself, on fol. 9<sup>a</sup>. <em>Maḳṣad</em> <em>II</em>, in three ḳisms. Life, deeds, sayings, and miracles of Bahâ-aldîn Naḳshband (A.H. 718-791 = A.D. 1318-1389), on fol. 35<sup>a</sup>. <em>Maḳṣad</em> <em>III</em>. Shaikhs who lived from Bahâ-aldîn’s time to that of ‘Ubaid-allâh Aḥrâr, on fol. 119<sup>b</sup>. <em>Maḳṣad</em> <em>IV</em>. Life, deeds, sayings, and miracles of Khawâjah ’Ubaid-allâh (A.H. 806-895 = A.D. 1404-1490), on fol. 196<sup>a</sup>, in three marṣads and a khâtimah, the subdivisions quite identical with that in the Rashaḥât. No date. Tenth century. No. 1426, ff. 227, ll. 19; good Nasta’lîḳ; size, 10<sup>3/8</sup> in. by 6<sup>3/8</sup> in.
DOI: 10.25921/vvm7-t619
title: EM2040 Water Column Sonar Data Collected During EQT180001
DOI: 10.6084/m9.figshare.20032229
title: C3H-LDLR-/- type 2 diabetes

description: Western diet-induced type 2 diabetes in genetically engineered mice
DOI: 10.6084/m9.figshare.20032229.v1
title: C3H-LDLR-/- type 2 diabetes

description: Western diet-induced type 2 diabetes in genetically engineered mice
DOI: 10.5281/zenodo.6617997
title: Benchmark Gene Counts for scRNA-seq Analysis

description: A gene counts file, containing a large list of R matrices with gene counts and cells saved in RDS format with genes as rows and cells as columns. Contains 48 datasets stored across various matrices types. This data set is adapted from the data used in Chen, X., Yang, Z., Chen, W. <em>et al.</em> A multi-center cross-platform single-cell RNA sequencing reference dataset. <em>Sci Data</em> <strong>8, </strong>39 (2021). https://doi.org/10.1038/s41597-021-00809-x The "mixed" cell datasets have been removed form this collection, leaving 48 of the original 72 datasets.
DOI: 10.5281/zenodo.6617996
title: Benchmark Gene Counts for scRNA-seq Analysis

description: A gene counts file, containing a large list of R matrices with gene counts and cells saved in RDS format with genes as rows and cells as columns. Contains 48 datasets stored across various matrices types. This data set is adapted from the data used in Chen, X., Yang, Z., Chen, W. <em>et al.</em> A multi-center cross-platform single-cell RNA sequencing reference dataset. <em>Sci Data</em> <strong>8, </strong>39 (2021). https://doi.org/10.1038/s41597-021-00809-x The "mixed" cell datasets have been removed form this collection, leaving 48 of the original 72 datasets.
DOI: 10.5066/p942clnf
title: Data Release for Latency Testing of Wireless Emergency Alerts intended for the ShakeAlert earthquake early warning system for the West Coast of the United States of America

description: ShakeAlert, the earthquake early warning (EEW) system for the West Coast of the United States, attempts to provides crucial warnings before strong shaking occurs. However, because the alerts are triggered only when an earthquake is already in progress, and the alert latencies and delivery times are platform dependent, the time between these warnings and the arrival of shaking is variable. The ShakeAlert system uses, among other public alerting platforms like Google Android operating system and smartphone apps, the Federal Emergency Management Agency Integrated Public Alert & Warning System (IPAWS). IPAWS sends Wireless Emergency Alerts (WEAs) informing people via their smartphones and other mobile devices about various events, such as natural hazards, child abductions, or public health information about COVID-19. However, little is known about the IPAWS delivery latencies. Given that people may have only a few seconds of notice when they receive an alert, quantifying latencies is critical to understanding whether the IPAWS system is useful for EEW. In this study, we developed new methods to test the IPAWS distribution system's performance, both with devices in a controlled environment and as well as with a 2019 community-based feedback form, in Oakland and San Diego County, California, respectively. The controlled environment test used mobile phones (including smart and non-smart phones) and associated devices to determine alert receipt times; the community research form had participants self-report their receipt times. By triangulating the data between the controlled test environment and the community research, we determined the latency statistics as well as whether the geofence (the geographic area where the alert was intended to be sent) held broadly. We found that the latencies were similar between the two tests despite the large differences in population sizes. WEA messages were received within a median time frame of 6-12 s, and the geofence held with only a few exceptions. We use this latency to assess how the system would have performed in two large earthquakes, the 1989 M6.9 Loma Prieta and 2019 M7.1 Ridgecrest earthquakes, which both occurred near our WEA test locations. Our analysis revealed that had IPAWS been available during those earthquakes, particularly Loma Prieta, it would have provided crucial seconds of notice that damaging shaking was imminent in some locations relatively far from the epicenter. Further, we find affordable non-smart phone options can receive WEAs as fast as more expensive smartphones. Finally, our new method can be used for latency and geospatial testing going forward for IPAWS and other similar alerting systems.
DOI: 10.21227/gxtj-bw27
title: MATLAB m file to plot average GPA of undergrad students in a university

description: The paper describes a detailed procedure used to increase the reliability of online exams at a university. Background: The COVID-19 pandemic forced most universities to teach online. The most challenging part of online teaching is conducting online exams. Cheating in online exams is much easier, and many students may opt to cheat. Consequently, a fair assessment of the student performance becomes very challenging. Even though online teaching reduces teaching effectiveness, in many universities, the average GPA of students was observed to increase significantly. Intended outcomes: Since correlated, reducing cheating in online exams is vital. Application Design: In close collaboration with the computer center, the university administration designed a procedure containing some technological and innovative steps to be applied in online exams throughout the university. Findings: After applying the exam procedure in all courses, the reliability of online exams is greatly improved. The average GPA of students in the university returned to the pre-pandemic level.
DOI: 10.6084/m9.figshare.20032303
title: Evaluation of the the attitudes towards use of drugs in an urban Northeastern population of Brazil

description: ABSTRACT BACKGROUND AND OBJECTIVES: The use of drugs has improved general population quality of life and health conditions. However, pharmaceutical industries spread a purely curative view and total well-being associated to its use. This study aimed at evaluating population attitudes with regard to the use of drugs in the city of Frei Paulo/SE, Brazil. METHODS: Data were collected by means of a questionnaire applied by trained people and in the presence of the community health agent, in the micro-regions of the Family Health Strategy. RESULTS: Participated in the study 186 people, predominantly females (77.95%) with mean age of 45.25±14.91 years. 73.12% of respondents have reported reading patient information leaflets, however approximately 40.0% of respondents have not completed elementary school, which might have impaired the understanding of such information. 31.72% have stated knowing that drugs in high doses may harm health. However, 9.14% of participants have confirmed using drugs in doses higher than those prescribed, and from them, 29.41% had complications. CONCLUSION: It is imperative the development of public policies focusing on population information and awareness with regard to the responsible use of drugs.
DOI: 10.6084/m9.figshare.20032303.v1
title: Evaluation of the the attitudes towards use of drugs in an urban Northeastern population of Brazil

description: ABSTRACT BACKGROUND AND OBJECTIVES: The use of drugs has improved general population quality of life and health conditions. However, pharmaceutical industries spread a purely curative view and total well-being associated to its use. This study aimed at evaluating population attitudes with regard to the use of drugs in the city of Frei Paulo/SE, Brazil. METHODS: Data were collected by means of a questionnaire applied by trained people and in the presence of the community health agent, in the micro-regions of the Family Health Strategy. RESULTS: Participated in the study 186 people, predominantly females (77.95%) with mean age of 45.25±14.91 years. 73.12% of respondents have reported reading patient information leaflets, however approximately 40.0% of respondents have not completed elementary school, which might have impaired the understanding of such information. 31.72% have stated knowing that drugs in high doses may harm health. However, 9.14% of participants have confirmed using drugs in doses higher than those prescribed, and from them, 29.41% had complications. CONCLUSION: It is imperative the development of public policies focusing on population information and awareness with regard to the responsible use of drugs.
DOI: 10.6084/m9.figshare.20032304
title: Biopsychosocial factors of Axis II of the Research Diagnostic Criteria for Temporomandibular Disorders in individuals with muscular temporomandibular disorder and migraine

description: ABSTRACT BACKGROUND AND OBJECTIVES: To relate biopsychosocial variables of Research Diagnostic Criteria for Temporomandibular Disorders to groups of patients with temporomandibular disorders, temporomandibular disorders and migraine and a control group. METHODS: This is a cross-sectional observational study where 280 consecutive patients were evaluated and distributed in three groups: group I (140 control individuals); group II (65 individuals with muscle temporomandibular disorders) and group III (75 individuals with migraine and muscle temporomandibular disorders). Exclusion criteria were individuals with clinical history of muscle inflammatory processes, muscle spasms, contractures and acute temporomandibular joint traumatic injury. RESULTS: Group III individuals had association with severe depression (p&lt;0.001), level 4 in pain severity (p=0.004), unspecific physical symptoms without severe pain (p&lt;0.0001) and unspecific symptoms with severe pain (p&lt;0.00001). There has been significant difference between females and males in group III (Z=2.59; p=0.001), with longer pain duration among females. The percentage of females in group III was significantly higher as compared to males (p=0.004). CONCLUSION: The relationship between variables and the three groups has shown a higher number of individuals with more severe symptoms in group III. So, it is understood that migraine is a morbid condition often associated to temporo mandibular disorders, worsening symptoms referred by patients. There is the need for multidisciplinary evaluation of these individuals to optimize treatment and minimize morbidity, costs and the number of medical visits.
DOI: 10.6084/m9.figshare.20032304.v1
title: Biopsychosocial factors of Axis II of the Research Diagnostic Criteria for Temporomandibular Disorders in individuals with muscular temporomandibular disorder and migraine

description: ABSTRACT BACKGROUND AND OBJECTIVES: To relate biopsychosocial variables of Research Diagnostic Criteria for Temporomandibular Disorders to groups of patients with temporomandibular disorders, temporomandibular disorders and migraine and a control group. METHODS: This is a cross-sectional observational study where 280 consecutive patients were evaluated and distributed in three groups: group I (140 control individuals); group II (65 individuals with muscle temporomandibular disorders) and group III (75 individuals with migraine and muscle temporomandibular disorders). Exclusion criteria were individuals with clinical history of muscle inflammatory processes, muscle spasms, contractures and acute temporomandibular joint traumatic injury. RESULTS: Group III individuals had association with severe depression (p&lt;0.001), level 4 in pain severity (p=0.004), unspecific physical symptoms without severe pain (p&lt;0.0001) and unspecific symptoms with severe pain (p&lt;0.00001). There has been significant difference between females and males in group III (Z=2.59; p=0.001), with longer pain duration among females. The percentage of females in group III was significantly higher as compared to males (p=0.004). CONCLUSION: The relationship between variables and the three groups has shown a higher number of individuals with more severe symptoms in group III. So, it is understood that migraine is a morbid condition often associated to temporo mandibular disorders, worsening symptoms referred by patients. There is the need for multidisciplinary evaluation of these individuals to optimize treatment and minimize morbidity, costs and the number of medical visits.
DOI: 10.6084/m9.figshare.20032306
title: Pain in patients attended at risk classification of an emergency service

description: ABSTRACT BACKGROUND AND OBJECTIVES: Pain is a major symptom responsible for the search for urgency care. This study aimed at checking the presence of pain in patients attending the risk classification. METHODS: This is a cross-sectional and descriptive study carried out at an urgency care unit, using a form with socio-demographic and clinical data, risk classification, analgesia and pain record on medical charts. Pain Management Index proposed by the World Health Organization was calculated. RESULTS: From 102 patients included in the study, 82 (80.2%) reported pain, 45 (54.9%) were females, 48 (58.5%) were married, most (62 - 75.6%) lived in Greater Aracaju, 28 (34.1%) were classified as yellow. Acute, severe to moderate pain was the most frequent. In 71 (86.6%) cases, continuous pain has motivated the search for urgency care. Pain recording was present in almost all medical charts, being 80.5% performed by physicians. Simple analgesics and non-steroid anti-inflammatory drugs were the most frequently prescribed analgesics (59 - 72%). Pain management was inadequate in 86.6% of cases and there has been wide variation between admission and administration of first analgesia (mean: 94.5 min; min-max: 8-360 min). CONCLUSION: The lack of analgesic protocols at risk classification may impair adequate pain management.
DOI: 10.6084/m9.figshare.20032306.v1
title: Pain in patients attended at risk classification of an emergency service

description: ABSTRACT BACKGROUND AND OBJECTIVES: Pain is a major symptom responsible for the search for urgency care. This study aimed at checking the presence of pain in patients attending the risk classification. METHODS: This is a cross-sectional and descriptive study carried out at an urgency care unit, using a form with socio-demographic and clinical data, risk classification, analgesia and pain record on medical charts. Pain Management Index proposed by the World Health Organization was calculated. RESULTS: From 102 patients included in the study, 82 (80.2%) reported pain, 45 (54.9%) were females, 48 (58.5%) were married, most (62 - 75.6%) lived in Greater Aracaju, 28 (34.1%) were classified as yellow. Acute, severe to moderate pain was the most frequent. In 71 (86.6%) cases, continuous pain has motivated the search for urgency care. Pain recording was present in almost all medical charts, being 80.5% performed by physicians. Simple analgesics and non-steroid anti-inflammatory drugs were the most frequently prescribed analgesics (59 - 72%). Pain management was inadequate in 86.6% of cases and there has been wide variation between admission and administration of first analgesia (mean: 94.5 min; min-max: 8-360 min). CONCLUSION: The lack of analgesic protocols at risk classification may impair adequate pain management.
DOI: 10.6084/m9.figshare.20032309.v1
title: B complex vitamins for analgesic therapy

description: ABSTRACT BACKGROUND AND OBJECTIVES: The B complex vitamins have been used as single therapy or combined to other drugs, such as anti-inflammatory drugs, in different clinical situations, such as degenerative spinal diseases, rheumatologic diseases, polyneuropathies and in different postoperative situations. This study aimed at identifying in the scientific literature most recent evidences of the use of B complex vitamins as analgesic therapy and at describing clinical situations where their analgesic action could be observed. CONTENTS: A search was carried out in Pubmed, Medline, LILACS, Cochrane Library and Scielo databases, contemplating the last 10 years and titles in Portuguese, Spanish and English. Keywords were: "pain", "B complex vitamins", "management", "vitamin B1", "vitamin B6", "vitamin B12", "thiamine", "pyridoxine" and "cyanocobalamin". Among 40 studies found, we have selected just musculoskeletal and neuropathic pain trials with humans, and where B complex vitamins were used as analgesic agents. From these, 13 studies were selected for meeting inclusion criteria. In all of them, B complex vitamins played roles in analgesia, even when in single therapy. B complex vitamins had also anti-inflammatory and anti-pruritus action, in addition to improving functionality. CONCLUSION: Existing studies, although scarce and heterogeneous, have shown that B complex vitamins have analgesic effect. They are considered safe and have low cost and have shown to be a good option as adjuvant analgesic therapy.
DOI: 10.6084/m9.figshare.20032309
title: B complex vitamins for analgesic therapy

description: ABSTRACT BACKGROUND AND OBJECTIVES: The B complex vitamins have been used as single therapy or combined to other drugs, such as anti-inflammatory drugs, in different clinical situations, such as degenerative spinal diseases, rheumatologic diseases, polyneuropathies and in different postoperative situations. This study aimed at identifying in the scientific literature most recent evidences of the use of B complex vitamins as analgesic therapy and at describing clinical situations where their analgesic action could be observed. CONTENTS: A search was carried out in Pubmed, Medline, LILACS, Cochrane Library and Scielo databases, contemplating the last 10 years and titles in Portuguese, Spanish and English. Keywords were: "pain", "B complex vitamins", "management", "vitamin B1", "vitamin B6", "vitamin B12", "thiamine", "pyridoxine" and "cyanocobalamin". Among 40 studies found, we have selected just musculoskeletal and neuropathic pain trials with humans, and where B complex vitamins were used as analgesic agents. From these, 13 studies were selected for meeting inclusion criteria. In all of them, B complex vitamins played roles in analgesia, even when in single therapy. B complex vitamins had also anti-inflammatory and anti-pruritus action, in addition to improving functionality. CONCLUSION: Existing studies, although scarce and heterogeneous, have shown that B complex vitamins have analgesic effect. They are considered safe and have low cost and have shown to be a good option as adjuvant analgesic therapy.