cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.uc6wz9
title: Occurrence Download

description: A dataset containing 2615 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tylenchorhynchus Cobb, 1913"
 ]
}

 The dataset includes 2615 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001670-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgynmw
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Etlingera elatior (Jack) R.M.Sm."
 ]
}

 The dataset includes 162 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001671-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nx3bex
title: Occurrence Download

description: A dataset containing 485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Vigna nigritia Hook.f."
 ]
}

 The dataset includes 485 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001674-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10459130
title: Data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"

description: Original data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"
DOI: 10.5281/zenodo.10459131
title: Dataset for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"

description: Original data for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"
DOI: 10.5281/zenodo.14178493
title: Data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"

description: Original data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"
DOI: 10.5281/zenodo.14883095
title: Data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"

description: Original data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"
DOI: 10.5281/zenodo.14893077
title: Data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"

description: Original data and code for the publication "Dieback of Calluna vulgaris in a coastal heathland after the 2018 extreme drought"
DOI: 10.15468/dl.bwebg4
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Antarctic Penguin Biogeography Project: Database of abundance and distribution for the Adélie, chinstrap, gentoo, emperor, macaroni, and king penguin south of 60 S"
 ]
}

 The dataset includes 4768 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001673-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jx6bft
title: Occurrence Download

description: A dataset containing 4539272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Year 2021-2025"
 ]
}

 The dataset includes 4539272 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001656-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.twjxy7
title: Occurrence Download

description: A dataset containing 10254565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Year 2000-2025"
 ]
}

 The dataset includes 10254565 records from 817 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001659-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/ac0b406c-1c59-41e6-8b73-026790a0c1ca
title: Chemical Evolution of PSBs (2023)

description: Contains the data for the paper Leungh et al. 2023 on the chemical evolution of PSBs in MaNGA. Included are the stacked 1D spectra for all 50 objects and their fitted posterior samples.
DOI: 10.5281/zenodo.14892621
title: DeepCNA: an explainable deep learning method for cancer diagnosis and cancer-specific patterns of copy number aberrations

description: Data associated with the manuscript: https://www.biorxiv.org/content/10.1101/2024.03.08.584160v1

A deep learning approach classified samples according to cancer primary site, based only on binned copy number aberations. Guided integrated gradients was then used to calculate an attribute score for each bin, representing how important that genomic location was in the cancer classification.

Output of the analysis:



Binned copy numbers for 6707 samples from the Genomics England Limited data set (channel 0 = total copy number, channel 1 = minor allele copy number)

Attribute scores for how important each genomic bin was for the cancer classification (channel 0 and channel 1)

Metadata linking rows in the binned data above to sample information


Input data for the analysis



DATA_CN.tgz contains each sample's copy number profile as an .npy file

DATA.tgz contains each sample's normalised copy number profile as an .npy file. This is the input to the neural network training in the DeepCNA repository
DOI: 10.5281/zenodo.14892622
title: DeepCNA: an explainable deep learning method for cancer diagnosis and cancer-specific patterns of copy number aberrations

description: Data associated with the manuscript: https://www.biorxiv.org/content/10.1101/2024.03.08.584160v1

A deep learning approach classified samples according to cancer primary site, based only on binned copy number aberations. Guided integrated gradients was then used to calculate an attribute score for each bin, representing how important that genomic location was in the cancer classification.

Output of the analysis:



Binned copy numbers for 6707 samples from the Genomics England Limited data set (channel 0 = total copy number, channel 1 = minor allele copy number)

Attribute scores for how important each genomic bin was for the cancer classification (channel 0 and channel 1)

Metadata linking rows in the binned data above to sample information


Input data for the analysis



DATA_CN.tgz contains each sample's copy number profile as an .npy file

DATA.tgz contains each sample's normalised copy number profile as an .npy file. This is the input to the neural network training in the DeepCNA repository
DOI: 10.5281/zenodo.14893088
title: The impact of PCK1 knockout on the apoptosis of FLS cells.
DOI: 10.15468/dl.gytbqv
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Geometry POLYGON((-113.80336 -4.72792,-50.19664 -4.72792,-50.19664 20.72792,-113.80336 20.72792,-113.80336 -4.72792))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rhynchortyx cinctus (Salvin, 1876)"
 ]
}

 The dataset includes 220 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001676-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14892592
title: Monoterpene oxidation pathways initiated by acyl peroxy radical addition

description: Data assets for the article "Monoterpene oxidation pathways initiated by acyl peroxy radical addition". 

Authors: Dominika Pasik, Thomas Golin Almeida, Emelda Ahongshangbam, Siddharth Iyer, Nanna Myllys
DOI: 10.5281/zenodo.14892593
title: Monoterpene oxidation pathways initiated by acyl peroxy radical addition

description: Data assets for the article "Monoterpene oxidation pathways initiated by acyl peroxy radical addition". 

Authors: Dominika Pasik, Thomas Golin Almeida, Emelda Ahongshangbam, Siddharth Iyer, Nanna Myllys
DOI: 10.17630/88156f54-4535-4bcf-a5f1-fe6e3af53be0
title: Ultra-sensitive detection of circulating tumour DNA enriches for patients with greater risk of recurrence in clinically localised prostate cancer (dataset)

description: These files comprise the supplementary data for Pope et al. (2024) "Ultra-sensitive detection of circulating tumour DNA enriches for patients with greater risk of recurrence in clinically localised prostate cancer"

Supplementary Table 1 (in 1-s2.0-S0302283824000034-mmc1.docx) describes the clinical characteristics of the participants in the paper, combining 41 samples from Australia and 77 samples from the UK.

Supplementary Table 2 (in 1-s2.0-S0302283824000034-mmc2.xlsx) describes the 128 healthy male controls used in the paper, and the analysis batches for which they were used.

Supplementary Table 3 (in 1-s2.0-S0302283824000034-mmc1.docx) describes the 17 analysis batches studied in the paper.

Supplementary Table 4 (in 1-s2.0-S0302283824000034-mmc3.xlsx) details the key sequencing statistics, including the number of targets (by batch and by patient), the sequencing coverage achieved, and the proportion of targets covered for different thresholds.

Supplementary Table 5 (in 1-s2.0-S0302283824000034-mmc4.xlsx) details for 118 patients their key demographic, clinical and molecular characteristics, as well as whether circulating tumour DNA was detected.

Supplementary Table 6 (1-s2.0-S0302283824000034-mmc5.docx) Further details of cases where circulating tumour DNA was detected

Supplementary Table 7 (in 1-s2.0-S0302283824000034-mmc1.docx) Gives the outcome of an analysis of time to biochemical recurrence modelled in terms of PSA, pathologist T stage, ISUP grade group and whether ctDNA was detected.

Supplementary Table 8 (in 1-s2.0-S0302283824000034-mmc1.docx) Gives the outcome of an analysis of time to metastasis modelled in terms of PSA, pathologist T stage, ISUP grade group and whether ctDNA was detected.

Supplementary Table 9 (in 1-s2.0-S0302283824000034-mmc1.docx) Gives a summary of all survival models (both outcomes and whether adjusted for covariates or not).

Supplementary Table X (1-s2.0-S0302283824000034-mmc6.xlsx) Details of the members of the author collaboration "The Pan Prostate Cancer Group (PPCG)"
DOI: 10.15468/dl.rxg68j
title: Occurrence Download

description: A dataset containing 107 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lophura edwardsi (Oustalet, 1896)"
 ]
}

 The dataset includes 107 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001678-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6kuf7a
title: Occurrence Download

description: A dataset containing 4539272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Year 2021-2025"
 ]
}

 The dataset includes 4539272 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001662-250218110819086/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28597625
title: <b>Dynamically Adjusting Inter-Temporal Choice Task in Rodents </b>

description: This dataset includes behavioral data from a study investigating a novel dynamically adjusting delay discounting task in rats. The task allows trial-by-trial delay adjustments based on individual choice history, enabling a flexible and self-regulated decision-making paradigm. The data include individual rat choices, delay values, inter-trial intervals (ITIs), reward types, and timestamps across sessions. Also included are processed files for alternating choice analysis and quartile-based session summaries.
DOI: 10.6084/m9.figshare.28597625.v1
title: <b>Dynamically Adjusting Inter-Temporal Choice Task in Rodents </b>

description: This dataset includes behavioral data from a study investigating a novel dynamically adjusting delay discounting task in rats. The task allows trial-by-trial delay adjustments based on individual choice history, enabling a flexible and self-regulated decision-making paradigm. The data include individual rat choices, delay values, inter-trial intervals (ITIs), reward types, and timestamps across sessions. Also included are processed files for alternating choice analysis and quartile-based session summaries.
DOI: 10.5281/zenodo.10843581
title: Dataset related to ADHD phase 2 of the project "Transition care between adolescent and adult services for young people with chronic health needs in Italy", funded by the Italian Ministry of Health (RF-2019-12371228).

description: Dataset related to ADHD phase 2 of the project "Transition care between adolescent and adult services for young people with chronic health needs in Italy", funded by the Italian Ministry of Health (RF-2019-12371228).
DOI: 10.5281/zenodo.10843582
title: Dataset related to ADHD phase 2 of the project "Transition care between adolescent and adult services for young people with chronic health needs in Italy", funded by the Italian Ministry of Health (RF-2019-12371228).

description: Dataset related to ADHD phase 2 of the project "Transition care between adolescent and adult services for young people with chronic health needs in Italy", funded by the Italian Ministry of Health (RF-2019-12371228).
DOI: 10.15468/dl.9zejz4
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Merops apiaster Linnaeus, 1758",
 "Year 1990-2022"
 ]
}

 The dataset's 1 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041084-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2nj45h
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphelodoris brunnea Bergh, 1907"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077555-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnhvzc
title: Occurrence Download

description: A dataset containing 1534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((8.69661 49.25658,8.74048 49.25658,8.74048 49.28662,8.69661 49.28662,8.69661 49.25658))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1534 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041093-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vyuunn
title: Occurrence Download

description: A dataset containing 430 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Glyphostoma gabbii (Dall, 1889)"
 ]
}

 The dataset includes 430 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088060-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6uksr
title: Occurrence Download

description: A dataset containing 1307 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyperus mundii (Nees) Kunth"
 ]
}

 The dataset includes 1307 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019042-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y6nbux
title: Occurrence Download

description: A dataset containing 651 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Acmella decumbens (Sm.) R.K.Jansen"
 ]
}

 The dataset includes 651 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0100936-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tyzmyf
title: Occurrence Download

description: A dataset containing 20503 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Gadus morhua Linnaeus, 1758"
 ]
}

 The dataset includes 20503 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041097-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25699560
title: Supplementary Material for: Unstimulated Luteinizing Hormone for Assessment of Suppression During Treatment of Central Precocious Puberty with 6-Month Subcutaneous Leuprolide Acetate: Correlations with Clinical Response

description: Introduction: Phase 3 trial of 6-month subcutaneous leuprolide acetate (SC-LA) in children with central precocious puberty (CPP) demonstrated efficacy and safety. Aims of this secondary analysis: evaluate unstimulated luteinizing hormone (LH) as efficacy measure; assess clinical suppression metrics; and present biochemical and clinical data for subgroups not achieving hormone suppression.
Methods: 62 children with treatment-naïve CPP received 2 doses of 45 mg SC-LA at 24-week intervals. Unstimulated and GnRH-stimulated LH, E2, and T concentrations were measured. Clinical measures included bone age (BA) and predicted adult height (PAH). 
Results: 84% and 86% of children achieved unstimulated LH&lt;1IU/L at weeks 24 and 48, respectively. Of 8 children not achieving unstimulated LH&lt;1IU/L at week 24 that completed the study, all showed lack of pubertal stage progression and stable/decreased BA to chronological age ratio (BA/CA). Received operating characteristic (ROC) analyses suggested unstimulated LH is a good diagnostic predictor of GnRH-stimulated LH&lt;4IU/L at week 24 and 48 (AUC=0.88). Across all children, mean BA/CA improved from 1.4 (screening) to 1.3 (week 48) and mean PAH increased by 3cm. Of 7 girls not achieving stimulated LH&lt;4IU/L at week 24, all achieved E2&lt;10pg/mL, showed lack of pubertal stage progression, and had stable or decreased BA/CA by week 48. Additionally, 6/7 had increased PAH by week 48 and 4 had unstimulated LH&lt;1IU/L. 
Conclusion: Unstimulated LH has value as an efficacy measure and concentrations &lt;1IU/L may be an adequate surrogate of treatment response in children with CPP. All children who completed the study had evidence of pubertal suppression.
DOI: 10.15468/dl.mt2fcb
title: Occurrence Download

description: A dataset containing 2286 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aplysia juliana Quoy & Gaimard, 1832"
 ]
}

 The dataset includes 2286 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077616-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gy2jn2
title: Occurrence Download

description: A dataset listing the 6309 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is The Coleoptera collection (EC) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset's 6309 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041119-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4bv36
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Xylomyidae"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077554-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nm6baw
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "Country is Greece",
 "OccurrenceStatus is Present",
 "TaxonKey is Merops persicus Pallas, 1773",
 "Year 1990-2022"
 ]
}

 The dataset includes 46 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041106-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.