cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15721195
title: Data for "Coherent enhancement of collection of light from linear ion crystals"

description: Here we provide the experimental and theoretical data corresponding to the manuscript "Coherent enhancement of collection of light from linear ion crystals".  The Python code that was used to generate the theoretical data is also provided. 

 

Experimental data are in files Exp_2_ions.text,  Exp_2_ions_repeat.txt, etc. There you can see the relative enhancement P_D, rel dependence on the voltage applied to the tips. From these data, we obtained maximal values, which were then depicted in Figure 3 of the paper.

 

There are three programs harmonic_alpha=45st.py, n=05_alpha=45deg_phase.py, and ekvid_alpha=45st.py.

The program harmonic_alpha=45st.py was used for the majority of simulations.

Its modified version ekvid_alpha=45st.py was used for the generation of data in the file Fig2_c_n=05_equid_alpha=45deg_no_motion.txt.

Its modified version n=05_alpha=45deg_phase was used for the generation of data in the file Fig2_c_n=05_alpha=45deg_phase_no_motion.

 

In Fig2_b_...txt and Fig3_...txt files, there are ion numbers in the first column and their highest values of P_D, rel in the second column.

In Fig2_a_...txt and Fig2_c_n=05_equid_alpha=45deg_no_motion.txt files, there are NA in the first column, the highest values of P_D, rel for corresponding NA and the corresponding spatial length scale l.

In Fig Fig2_c_n=05_alpha=45deg_phase_no_motion.txt file, there are NA in the first column, the highest values of P_D, rel for corresponding NA. In this case, the spatial length scale l = l_min.
DOI: 10.6084/m9.figshare.29269037
title: N. pnar Genome

description: The genome sequencing was done through long reads technology (PacBio) and high quality draft genome assembly, of 1.56 Gb in size with 1,423 contigs, N<sub>50</sub> of 18.990 Mb was generated, which showed 99% (BUSCO) genome completenes. The genome assembly contains 44.30% repetitive elements, 1,416,376 SSRs, and 37,559 functionally annotated genes. Single-copy orthologs (SOGs) analysis indicated <i>N. pnar</i> to be in the same cluster with other cave dwelling Cyprinids used in the sudy.
DOI: 10.6084/m9.figshare.29269037.v1
title: N. pnar Genome

description: The genome sequencing was done through long reads technology (PacBio) and high quality draft genome assembly, of 1.56 Gb in size with 1,423 contigs, N<sub>50</sub> of 18.990 Mb was generated, which showed 99% (BUSCO) genome completenes. The genome assembly contains 44.30% repetitive elements, 1,416,376 SSRs, and 37,559 functionally annotated genes. Single-copy orthologs (SOGs) analysis indicated <i>N. pnar</i> to be in the same cluster with other cave dwelling Cyprinids used in the sudy.
DOI: 10.5281/zenodo.17579189
title: Probing Supernovae through gravitational wave entropy

description: This dataset contains gravitational waves (GWs) used in our work Sakan et al. (2025). The first 328 columns represent the gravitational wave strain D · h [cm] for the corresponding time values ranging from -9.938 ms to 9.958 ms, with a sampling rate 16384 Hz. The zero time refers to the time of core bounce. Each row within these first 328 columns corresponds to 1332 different gravitational wave signals.

Columns 329 to 333 contain the following additional parameters:



Mass: Mass label from 0 to 3, corresponding to 12$M_\odot$, 15$M_\odot$ , 27$M_\odot$ , and 40$M_\odot$ .

EOS: The equation of state (EOS) model label, from 1 to 6, corresponding to BHB$\Lambda\Phi$, SFHx, SFHo, GShenFSU2.1, HSDD2, and LS220.

T/|W|: The rotational parameter.

f_peak: The peak frequency [Hz].

D Delta h: D · ∆h [cm].


For each row (representing a single gravitational wave signal), these parameters provide information about the signal's mass, EOS model, rotational parameter, peak frequency, and D · ∆h.
DOI: 10.5281/zenodo.17579188
title: Probing Supernovae through gravitational wave entropy

description: This dataset contains gravitational waves (GWs) used in our work Sakan et al. (2025). The first 328 columns represent the gravitational wave strain D · h [cm] for the corresponding time values ranging from -9.938 ms to 9.958 ms, with a sampling rate 16384 Hz. The zero time refers to the time of core bounce. Each row within these first 328 columns corresponds to 1332 different gravitational wave signals.

Columns 329 to 333 contain the following additional parameters:



Mass: Mass label from 0 to 3, corresponding to 12$M_\odot$, 15$M_\odot$ , 27$M_\odot$ , and 40$M_\odot$ .

EOS: The equation of state (EOS) model label, from 1 to 6, corresponding to BHB$\Lambda\Phi$, SFHx, SFHo, GShenFSU2.1, HSDD2, and LS220.

T/|W|: The rotational parameter.

f_peak: The peak frequency [Hz].

D Delta h: D · ∆h [cm].


For each row (representing a single gravitational wave signal), these parameters provide information about the signal's mass, EOS model, rotational parameter, peak frequency, and D · ∆h.
DOI: 10.15468/dl.sgc2p6
title: Occurrence Download

description: A dataset containing 903681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cottus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 903681 records from 506 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013581-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18493546
title: Do Vocational Students Think About Mathematics the Same Way? CFA and Multi-Group Measurement Invariance of Conceptual Understanding
DOI: 10.5281/zenodo.18493547
title: Do Vocational Students Think About Mathematics the Same Way? CFA and Multi-Group Measurement Invariance of Conceptual Understanding
DOI: 10.15468/dl.czrxr4
title: Occurrence Download

description: A dataset containing 116774 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adalia bipunctata"
 ]
}

 The dataset includes 116774 records from 755 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013582-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22011/strenda_db.igxi1l
title: Kinetic dissection of the reaction of the human GDP-L-fucose synthase

description: GDP-L-fucose synthase (GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase) (Protein FX) (Red cell NADP(H)-binding protein) (Short-chain dehydrogenase/reductase family 4E member 1), Q13630, GDP-beta-L-fucose + NADP+ = GDP-4-dehydro-alpha-D-rhamnose + NADPH + H+
DOI: 10.15468/dl.x3qz6v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((56.909889782322345 34.42174451768443, 56.915778010384365 34.42873342356908, 56.919908815271995 34.436539946927795, 56.92212289486762 34.444864402710905, 56.92233441612742 34.45338706687902, 56.920534427183014 34.46178043572781, 56.91679132666754 34.4697218089222, 56.91124835315974 34.47690571312837, 56.90411817321839 34.483055685419075, 56.89567476180177 34.48793495690106, 56.88624287892866 34.491355616964626, 56.87618554609913 34.49318589601026, 56.86589001030682 34.493355277401214, 56.855752748051145 34.49185723483946, 56.84616410311383 34.48874948577096, 56.83749316771659 34.48415175068388, 56.830073506137325 34.47824110787216, 56.82419028352351 34.471245128970466, 56.82006930251413 34.463433068136816, 56.81786836963019 34.45510545345059, 56.81767131644978 34.44658248986506, 56.819484892210454 34.4381917266681, 56.82323862981178 34.4302554675083, 56.828787671275386 34.42307840715477, 56.83591842624921 34.41693596662066, 56.84435683222844 34.412063768157644, 56.853778891224394 34.408648645571986, 56.863823077333045 34.406821525431724, 56.87410414503179 34.40665244345844, 56.88422782046041 34.408147880366435, 56.89380582831073 34.41125051539738, 56.902470695761394 34.41584140662958, 56.909889782322345 34.42174451768443))",
 "KingdomKey is one of (Animalia, Fungi, Plantae)",
 "Year is one of (2016, 2017, 2018, 2019, 2020, 2021, 2022, 2023, 2024, 2025, 2026)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013610-260129131611470/datasets/export for details.
DOI: 10.15468/dl.5aaxn6
title: Occurrence Download

description: A dataset containing 6836 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Continent is Europe",
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Juniperus thurifera"
 ]
}

 The dataset includes 6836 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013609-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.31266463
title: Butterflies_agriculture_2026

description: Data from butterfly surveys done in Piedmont, Italy, from 2010 to 2019, in four types of agroecosystems: rice fields, vineyards, pastures and orchards. This datasets contains raw counts for all butterflies species identified.
DOI: 10.6084/m9.figshare.31266463.v1
title: Butterflies_agriculture_2026

description: Data from butterfly surveys done in Piedmont, Italy, from 2010 to 2019, in four types of agroecosystems: rice fields, vineyards, pastures and orchards. This datasets contains raw counts for all butterflies species identified.
DOI: 10.5281/zenodo.18471460
title: 57Fe iron thin films for Mössbauer gamma optics (dataset)

description: Data are presented on a simple and effective method for depositing thin layers of 57Fe for use in Mössbauer spectroscopy. The proposed method allows the application of an enriched thin layer of iron onto the substrate material. The enriched iron was dissolved in sulfuric acid and the resulting electrolyte was transferred to the copper substrate. Electrolytically deposited iron films were analyzed by optical microscopy, scanning electron microscopy, X-ray diffraction analysis, and Mössbauer spectroscopy. Mössbauer analysis of the procured thin iron films displays a well-defined sextet structure of α-iron, with a small amount of β-Fe2O3. The oxidized layer is heavily concentrated toward the surface, as indicated by the CEMS measurement.The stored data form the basis of the forthcoming publication "57Fe iron thin films for Mössbauer gamma optics."
DOI: 10.15468/dl.j6cjxs
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Georgia",
 "DatasetKey is Bats of Georgia",
 "PublishingOrg is 3702ad69-3b08-4250-b28d-18298fabe936",
 "TaxonKey is Pipistrellus kuhlii"
 ]
}

 The dataset includes 83 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013611-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18471459
title: 57Fe iron thin films for Mössbauer gamma optics (dataset)

description: Data are presented on a simple and effective method for depositing thin layers of 57Fe for use in Mössbauer spectroscopy. The proposed method allows the application of an enriched thin layer of iron onto the substrate material. The enriched iron was dissolved in sulfuric acid and the resulting electrolyte was transferred to the copper substrate. Electrolytically deposited iron films were analyzed by optical microscopy, scanning electron microscopy, X-ray diffraction analysis, and Mössbauer spectroscopy. Mössbauer analysis of the procured thin iron films displays a well-defined sextet structure of α-iron, with a small amount of β-Fe2O3. The oxidized layer is heavily concentrated toward the surface, as indicated by the CEMS measurement.The stored data form the basis of the forthcoming publication "57Fe iron thin films for Mössbauer gamma optics."
DOI: 10.48544/1ff05912-96b0-42d3-9bad-a3d6f3cb6ed8
title: Developing Training and Educational Facility and accelerating Innovation for Heat Transition Through Future Heat Heroes Project
DOI: 10.5281/zenodo.17473501
title: dataitd24: FAIRqual Workshop Data from ITD24

description: Contains digitized flipchart data and qualitative analysis results from the FAIRqual workshop at the International Transdisciplinary Conference (ITD24) in Utrecht, November 2024. The workshop gathered experiences and perspectives on sharing qualitative data in transdisciplinary research.

For data access and documentation refer to: https://fairqual.github.io/dataitd24/ 
description: For data access and documentation refer to: https://fairqual.github.io/dataitd24/
DOI: 10.5281/zenodo.18493525
title: dataitd24: FAIRqual Workshop Data from ITD24

description: Contains digitized flipchart data and qualitative analysis results from the FAIRqual workshop at the International Transdisciplinary Conference (ITD24) in Utrecht, November 2024. The workshop gathered experiences and perspectives on sharing qualitative data in transdisciplinary research.

For data access and documentation refer to: https://fairqual.github.io/dataitd24/ 
description: For data access and documentation refer to: https://fairqual.github.io/dataitd24/
DOI: 10.15468/dl.e5k8v2
title: Occurrence Download

description: A dataset containing 24572790 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 PRINTF('%04d-%02d', "year", "month") yearmonth,
 countrycode countrycode,
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, countrycode, PRINTF('%04d-%02d', "year", "month"))) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, countrycode, PRINTF('%04d-%02d', "year", "month"))) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, countrycode, PRINTF('%04d-%02d', "year", "month"))) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, countrycode, PRINTF('%04d-%02d', "year", "month"))) ordercount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.classificationdetails['d7dddbf4-2cf0-4f39-9b2a-bb099caae36c']['familykey'] &lt;&gt; '' AND occurrence."year" IS NOT NULL AND occurrence."month" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 PRINTF('%04d-%02d', "year", "month"),
 occurrence.countrycode

 The dataset's 24572790 records were derived from 64553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013512-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18493577
title: Electronic supplementary materials for Wei et al., (2026) The contingent advantage of photosymbiosis in coral evolution

description: Electronic supplementary materials for Wei et al., (2026) The contingent advantage of photosymbiosis in coral evolution.The electronic supplementary materials consist of three folders, including Data, Results and Scripts.All data and scripts for replicating the results in this manuscript are provided.
DOI: 10.5281/zenodo.17734092
title: Electronic supplementary materials for Wei et al., (2026) The contingent advantage of photosymbiosis in coral evolution

description: Electronic supplementary materials for Wei et al., (2026) The contingent advantage of photosymbiosis in coral evolution.The electronic supplementary materials consist of three folders, including Data, Results and Scripts.All data and scripts for replicating the results in this manuscript are provided.
DOI: 10.35097/zwswh43dwg837xgu
title: Adding 161Dy-Mössbauer Spectroscopy to a Multitechnique Investigation of Magnetic Transitions in a {CoIII3DyIII3} Single-Molecule Toroic

description: Magnetic SQUID and MicroSQUID data, cantilever torque magnetometry, synchrotron Mössbauer spectroscopy and ab initio calculations.
DOI: 10.15468/dl.b2s24b
title: Occurrence Download

description: A dataset containing 24808 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cichorium intybus)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 24808 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013615-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gp65ny
title: Occurrence Download

description: A dataset containing 37411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 1984",
 "Geometry POLYGON((-25.0 69.0, 45.0 69.0, 45.0 72.0, -25.0 72.0, -25.0 69.0))"
 ]
}

 The dataset includes 37411 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013613-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18484676
title: C-COMPASS 2.0 sample session

description: Sample sessions for the C-COMPASS tool version 2.x (https://doi.org/10.1038/s41592-025-02880-3).

Four different checkpoints from loading the data to the final stistical analysis, based on the dataset from https://zenodo.org/records/13901167:



sample_session_1_data_loaded.ccompass: The fractionation and total proteome data was loaded, sample information has been assigned, and the marker list was loaded.

sample_session_2_pretraining.ccompass: The previous session after processing fractionation and total proteome data and matching markers.

sample_session_3_posttraining.ccompass: The previous session after training the model.

sample_session_4_final.ccompass: The previous session after predicting proteome and calculating global and class-centric changes.


To load any of these files into C-COMPASS:



Download the file

Launch C-COMPASS

File→Open

Choose C-COMPASS zip file type

Select the downloaded fiel

Open

Explore the GUI
DOI: 10.5281/zenodo.18484675
title: C-COMPASS 2.0 sample session

description: Sample sessions for the C-COMPASS tool version 2.x (https://doi.org/10.1038/s41592-025-02880-3).

Four different checkpoints from loading the data to the final stistical analysis, based on the dataset from https://zenodo.org/records/13901167:



sample_session_1_data_loaded.ccompass: The fractionation and total proteome data was loaded, sample information has been assigned, and the marker list was loaded.

sample_session_2_pretraining.ccompass: The previous session after processing fractionation and total proteome data and matching markers.

sample_session_3_posttraining.ccompass: The previous session after training the model.

sample_session_4_final.ccompass: The previous session after predicting proteome and calculating global and class-centric changes.


To load any of these files into C-COMPASS:



Download the file

Launch C-COMPASS

File→Open

Choose C-COMPASS zip file type

Select the downloaded fiel

Open

Explore the GUI
DOI: 10.5281/zenodo.17946577
title: CH4 emissions in paddy field and relative code

description:  Jurong Ecological Experimental Station, established by Nanjing University in April 2015, has a eddy flux tower measuring the CO2, H2O and CH4 fluxes. This station is located at the middle-lower Yangtze River Plain, China (31°48’24.59” N, 119°13’2.15” E).The field follows a typical rice-follow rotation with straw incorporation. Generally, the rice season begins in June and ends in late October, with water management practices consistent with local agricultural norms.To assess responses of CO2 and CH4 fluxes to the summer 2022 heatwave-drough, we calculate seasonal (June–August) sums of GPP, Re, NEP, and CH4 fluxes for each year during 2021-2024 along the climatic variables.
DOI: 10.5281/zenodo.17946576
title: CH4 emissions in paddy field and relative code

description:  Jurong Ecological Experimental Station, established by Nanjing University in April 2015, has a eddy flux tower measuring the CO2, H2O and CH4 fluxes. This station is located at the middle-lower Yangtze River Plain, China (31°48’24.59” N, 119°13’2.15” E).The field follows a typical rice-follow rotation with straw incorporation. Generally, the rice season begins in June and ends in late October, with water management practices consistent with local agricultural norms.To assess responses of CO2 and CH4 fluxes to the summer 2022 heatwave-drough, we calculate seasonal (June–August) sums of GPP, Re, NEP, and CH4 fluxes for each year during 2021-2024 along the climatic variables.
DOI: 10.15468/dl.8msjtd
title: Occurrence Download

description: A dataset containing 69459 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adalia decempunctata"
 ]
}

 The dataset includes 69459 records from 576 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013592-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uopm4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001214-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.foo2iy
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007580-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.