cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6881360.v2
title: Supplementary material 3. Gulf of Mexico biostratigraphic chart from the Bureau of Ocean Energy Management (BOEM), Regulation and Enforcement from the United States Department of Interior (https://www.data.boem.gov/Paleo/Files/biochart.pdf. Webpage accessed 15 November 2017.

description: Supplementary material 3. Gulf of Mexico biostratigraphic chart from the Bureau of Ocean Energy Management (BOEM), Regulation and Enforcement from the United States Department of Interior (https://www.data.boem.gov/Paleo/Files/biochart.pdf. Webpage accessed 15 November 2017.
DOI: 10.6084/m9.figshare.6881360.v1
title: Subsurface expression of a tertiary salt weld, Gulf of Mexico

description: Supplementary material 3. Gulf of Mexico biostratigraphic chart from the Bureau of Ocean Energy Management (BOEM), Regulation and Enforcement from the United States Department of Interior (https://www.data.boem.gov/Paleo/Files/biochart.pdf. Webpage accessed 15 November 2017.
DOI: 10.15129/5bef7bd0-535e-4590-9eb9-3112e6493001
title: Data for "A study of the ceramicisation of allylhydridopolycarbosilane by thermal volatilisation analysis and solid-state nuclear magnetic resonance"

description: Experimental data - Thermal volatilisation analysis, mass spectrometry, FTIR, solid-state Si-NMR, X-ray diffraction
DOI: 10.6084/m9.figshare.10027151
title: MOESM10 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 10 Table S7. Gene list and Go annotation of co-expression genes with selected CsbZIP gene involved in CL flower development.
DOI: 10.6084/m9.figshare.10027151.v1
title: MOESM10 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 10 Table S7. Gene list and Go annotation of co-expression genes with selected CsbZIP gene involved in CL flower development.
DOI: 10.6084/m9.figshare.10027166
title: MOESM12 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 12: Table S8. Transcriptome data of CsbZIP genes in shoot and root under abiotic stress.
DOI: 10.6084/m9.figshare.10027166.v1
title: MOESM12 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 12: Table S8. Transcriptome data of CsbZIP genes in shoot and root under abiotic stress.
DOI: 10.6084/m9.figshare.10027175
title: MOESM13 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 13: Table S9. Gene list and GO enrichment analysis of co-expression genes with abiotic related genes.
DOI: 10.6084/m9.figshare.10027175.v1
title: MOESM13 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 13: Table S9. Gene list and GO enrichment analysis of co-expression genes with abiotic related genes.
DOI: 10.6084/m9.figshare.10027178
title: MOESM14 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 14: Table S10. Primer list for gene specific primers.
DOI: 10.6084/m9.figshare.10027178.v1
title: MOESM14 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 14: Table S10. Primer list for gene specific primers.
DOI: 10.6084/m9.figshare.10027184
title: MOESM1 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 1: Table S1. Basic characteristic of CsbZIP genes in C. songorica.
DOI: 10.6084/m9.figshare.10027184.v1
title: MOESM1 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 1: Table S1. Basic characteristic of CsbZIP genes in C. songorica.
DOI: 10.6084/m9.figshare.22085810
title: 3D viscosity coefficient of lithosphere in the Sichuan-Yunnan region

description:  We present an integrated 3D model of viscosity coefficient beneath the Sichuan and Yunnan region based on the joint inversion of Rayleigh wave phase dispersions, topography, geoid height, and surface heat flow data.
"Wanli_Zhou_3D_integrated_model.xlsx" is the final 3D model.
DOI: 10.6084/m9.figshare.10027205
title: MOESM5 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 5: Table S2. Synteny blocks of bZIP genes within C. songorica genome.
DOI: 10.6084/m9.figshare.10027205.v1
title: MOESM5 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 5: Table S2. Synteny blocks of bZIP genes within C. songorica genome.
DOI: 10.6084/m9.figshare.10027208
title: MOESM6 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 6: Table S3. Synteny blocks of bZIP genes between C. songorica and rice genome.
DOI: 10.6084/m9.figshare.10027208.v1
title: MOESM6 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 6: Table S3. Synteny blocks of bZIP genes between C. songorica and rice genome.
DOI: 10.6084/m9.figshare.10027214
title: MOESM7 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 7: Table S4. Cis-elememts analysis of CsbZIP genes.
DOI: 10.6084/m9.figshare.10027214.v1
title: MOESM7 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 7: Table S4. Cis-elememts analysis of CsbZIP genes.
DOI: 10.6084/m9.figshare.10027217
title: MOESM3 of Immunoglobulin somatic hypermutation has clinical impact in DLBCL and potential implications for immune checkpoint blockade and neoantigen-based immunotherapies

description: Additional file 3. Diagnostic immunoglobulin heavy chain gene sequences
DOI: 10.6084/m9.figshare.10027217.v2
title: MOESM3 of Immunoglobulin somatic hypermutation has clinical impact in DLBCL and potential implications for immune checkpoint blockade and neoantigen-based immunotherapies

description: Additional file 3. Diagnostic immunoglobulin heavy chain gene sequences
DOI: 10.6084/m9.figshare.10027217.v1
title: MOESM3 of Immunoglobulin somatic hypermutation has clinical impact in DLBCL and potential implications for immune checkpoint blockade and neoantigen-based immunotherapies

description: Additional file 3. Diagnostic immunoglobulin heavy chain gene sequences
DOI: 10.6084/m9.figshare.10027220
title: MOESM8 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 8: Table S5. Expression pattern of CsbZIP genes in different organ.
DOI: 10.6084/m9.figshare.10027220.v1
title: MOESM8 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 8: Table S5. Expression pattern of CsbZIP genes in different organ.
DOI: 10.6084/m9.figshare.22605650
title: Additional file 4 of A reappraisal of the phylogeny and historical biogeography of Sparganium (Typhaceae) using complete chloroplast genomes

description: Additional file 4: Table S1. Sequence similarity among the chloroplast genomes of Sparganium species.
DOI: 10.6084/m9.figshare.10027223
title: MOESM9 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 9: Table S6. Go enrichment of DEG between CH and CL flowers.
DOI: 10.6084/m9.figshare.10027223.v1
title: MOESM9 of Comprehensive analysis of bZIP transcription factors uncovers their roles during dimorphic floret differentiation and stress response in Cleistogenes songorica

description: Additional file 9: Table S6. Go enrichment of DEG between CH and CL flowers.
DOI: 10.6084/m9.figshare.22605704
title: Additional file 7 of Integrated single-cell transcriptomics of cerebrospinal fluid cells in treatment-naïve multiple sclerosis

description: Additional file 7: Table S3. DE genes / Differentially expressed genes MS vs control cell type level 1. Depicted are the differential expressed genes in MS compared to control (Ctrl) for each cluster of cell type level 1 (DE genes). Listed for each gene is the Log fold change (log2-fold change), the p-value und the adjusted p-value (false discovery rate). We used the Welch’s t-test (cellxgene or diffxpy) for the discovery of differentially expressed genes between two groups of cells. A minimum of 10 cells in each group was required for calculation.
DOI: 10.6084/m9.figshare.13030985
title: Pilot Lab: Balcony Birdwatching

description: This is data taken from a pilot lab on birdwatching in the area of Vaughan, Ontario. Each row on the data sheet is a replication of the experiment representing a species level observation. the experiment was conducted by observing species for 60 minutes , approximately 1-2 hours before sundown. Observations took place at parks that had a variety of trees, shrubs and ponds. The iNaturalist app was used to help identify unknown species. <br><br>
DOI: 10.6084/m9.figshare.13030985.v1
title: Pilot Lab: Balcony Birdwatching

description: This is data taken from a pilot lab on birdwatching in the area of Vaughan, Ontario. Each row on the data sheet is a replication of the experiment representing a species level observation. the experiment was conducted by observing species for 60 minutes , approximately 1-2 hours before sundown. Observations took place at parks that had a variety of trees, shrubs and ponds. The iNaturalist app was used to help identify unknown species. <br><br>
DOI: 10.6084/m9.figshare.13017758
title: Balcony Bird Watching Metadata - Sheet1 (1).pdf

description: This data is a semi-tidy data set that records bird species, behaviour, and location. The birds were observed in parks/ lawns in Bracebridge and Toronto for an hour at a time. Each of the four replications take place on a different day, at a different time of day, and at a new location.
DOI: 10.6084/m9.figshare.13017758.v2
title: Balcony Bird Watching Metadata - Sheet1 (1).pdf

description: This data is a semi-tidy data set that records bird species, behaviour, and location. The birds were observed in parks/ lawns in Bracebridge and Toronto for an hour at a time. Each of the four replications take place on a different day, at a different time of day, and at a new location.
DOI: 10.6084/m9.figshare.13017758.v1
title: Balcony Bird Watching Metadata - Sheet1 (1).pdf

description: This data is a semi-tidy data set that records bird species, behaviour, and location. The birds were observed in parks/ lawns in Bracebridge and Toronto for an hour at a time. Each of the four replications take place on a different day, at a different time of day, and at a new location.
DOI: 10.17632/t8ph5rry29.1
title: Data for: An experimental study of cyberstander reactions under community-related influences. When gender complicates matters.

description: data from the submitted study "An experimental study of cyberstander reactions under community-related influences. When gender complicates matters." Excerpt from the Abstract: Our main research question focused on investigating whether and to what extent the four major factors and their potential interactions have a relevant influence on cyberstanders’ reactions. The participants (N=1859) were randomly assigned online to eight experimental conditions, in a 2x2x2x2 factorial design. The measurement instrument was a self-responded online questionnaire measuring the reaction to witnessing cyberbullying behavior. Our analysis identified significant effects of community rules, framing, and gender on the reaction of cyberbullying, but there was no similar effect of community rules. While specific combinations of community-related factors had a statistically significant effect on cyberstanders’ response, their effect sizes were small. We concluded that the impact of online community environmental features on individual response to cyberbullying is limited and can vary as a function of gender. Our results may indicate lower levels of social conformity in the communication environment specific to social network sites. Furthermore, these results suggest that the impact of gender on certain behavioral outcomes transcends the offline environment and manifests also within the virtual environment. Future research should continue and refine the study of the impact of various combinations of environmental factors on cyberstander reaction. Virtual communities might use framing and awareness-raising in increasing active resistance to cyberbullying.
DOI: 10.6084/m9.figshare.13023131
title: Birdwatching Pilot Metadata

description: Dataset contains data on frequency of bird species and their behaviour at a specific location (High Park, Toronto). All observations were made on the same day. The birds were observed for the duration of 130 min starting at 16:42. The water body indicated in the dataset is Grenadier Pond in High Park. Birds were observed from the distance and identified using eBird app and Google Lens.
DOI: 10.6084/m9.figshare.13023131.v1
title: Birdwatching Pilot Metadata

description: Dataset contains data on frequency of bird species and their behaviour at a specific location (High Park, Toronto). All observations were made on the same day. The birds were observed for the duration of 130 min starting at 16:42. The water body indicated in the dataset is Grenadier Pond in High Park. Birds were observed from the distance and identified using eBird app and Google Lens.
DOI: 10.6084/m9.figshare.13030970.v1
title: Thermal conductivity of brucite_f.xlsx

description: This folder contains the thermal conductivity datasets for Figure 1 and Figure 2 used in the paper:"<i>Thermal anomaly in the shallow lower mantle induced by decomposition of brucite to periclase</i>"<br>2020GL091044<br><br><br>
DOI: 10.6084/m9.figshare.13030775.v1
title: JVASP-66565 to JVASP-67673

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13030775
title: JVASP-66565 to JVASP-67673

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13030772
title: JVASP-65675 to JVASP-66564

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13030769
title: JVASP-64980 to JVASP-65674

description: JARVIS-DFT
DOI: 10.6084/m9.figshare.13020353.v4
title: BIOL 3250 Pilot lab data sheet.pdf

description: Plant species diversity was measured along a random unimpeded 50 metre line using a 0.5m by 0.5m quadrat at 1 metre intervals and recorded in a field journal using a spreadsheet with 6 columns representing a variable and 50 rows representing individual quadrats. The first column represented the number of times a full survey was conducted, in this case the survey was only conducted once. The second column represented the date of the study, which was September 15<sup>th</sup>, 2020 at 1pm. The third column represented the name of the researcher taking the measurements. The fourth column represented the location study site, which was Firgrove Park, coordinate 43.7520° N, 79.5212° W. The fifth column represented the total number of different species found within each quadrat which were identified based on descriptions of the Ontario weeds gallery and assigned a specific code. Any species that had more than 50% of its body in the border of the quadrat was account for and any plant species with less than 50% of its body within the border of the quadrat was excluded from recording. Finally, the sixth column represented the estimated vegetation cover within the 0.5m by 0.5m quadrat in percentage <br>The codes used for the study to identify various species of plants within the quadrats are: - <i>Cirsium arvense</i> (Canada thistle): CT - <i>Poaceae spp</i>. (Grass): G - <i>Taraxacum officinale</i> (Dandelion): D - <i>Trifolium spp.</i> (Clovers): C - <i>Ambrosia artemisiifolia</i> (Ragweed): RW - <i>Plantago major</i> (Broadleaf Plantain): BL - <i>Digitaria sanguinalis</i> (Crabgrass): CG - <i>Oxalis stricta</i> (Yellow Wood Sorrel): YS
DOI: 10.6084/m9.figshare.13020353.v5
title: BIOL 3250 Pilot lab data sheet.pdf

description: Plant species diversity was measured along a random unimpeded 50 metre line using a 0.5m by 0.5m quadrat at 1 metre intervals and recorded in a field journal using a spreadsheet with 6 columns representing a variable and 50 rows representing individual quadrats. The first column represented the number of times a full survey was conducted, in this case the survey was only conducted once. The second column represented the date of the study, which was September 15<sup>th</sup>, 2020 at 1pm. The third column represented the name of the researcher taking the measurements. The fourth column represented the location study site, which was Firgrove Park, coordinate 43.7520° N, 79.5212° W. The fifth column represented the total number of different species found within each quadrat which were identified based on descriptions of the Ontario weeds gallery and assigned a specific code. Any species that had more than 50% of its body in the border of the quadrat was account for and any plant species with less than 50% of its body within the border of the quadrat was excluded from recording. Finally, the sixth column represented the estimated vegetation cover within the 0.5m by 0.5m quadrat in percentage <br>The codes used for the study to identify various species of plants within the quadrats are: - <i>Cirsium arvense</i> (Canada thistle): CT - <i>Poaceae spp</i>. (Grass): G - <i>Taraxacum officinale</i> (Dandelion): D - <i>Trifolium spp.</i> (Clovers): C - <i>Ambrosia artemisiifolia</i> (Ragweed): RW - <i>Plantago major</i> (Broadleaf Plantain): BL - <i>Digitaria sanguinalis</i> (Crabgrass): CG - <i>Oxalis stricta</i> (Yellow Wood Sorrel): YS
DOI: 10.6084/m9.figshare.13020353.v6
title: BIOL 3250 Pilot lab data sheet.pdf

description: Plant species diversity was measured along a random unimpeded 50 metre line using a 0.5m by 0.5m quadrat at 1 metre intervals and recorded in a field journal using a spreadsheet with 6 columns representing a variable and 50 rows representing individual quadrats. The first column represented the number of times a full survey was conducted, in this case the survey was only conducted once. The second column represented the date of the study, which was September 15<sup>th</sup>, 2020 at 1pm. The third column represented the name of the researcher taking the measurements. The fourth column represented the location study site, which was Firgrove Park, coordinate 43.7520° N, 79.5212° W. The fifth column represented the total number of different species found within each quadrat which were identified based on descriptions of the Ontario weeds gallery and assigned a specific code. Any species that had more than 50% of its body in the border of the quadrat was account for and any plant species with less than 50% of its body within the border of the quadrat was excluded from recording. Finally, the sixth column represented the estimated vegetation cover within the 0.5m by 0.5m quadrat in percentage <br>The codes used for the study to identify various species of plants within the quadrats are: - <i>Cirsium arvense</i> (Canada thistle): CT - <i>Poaceae spp</i>. (Grass): G - <i>Taraxacum officinale</i> (Dandelion): D - <i>Trifolium spp.</i> (Clovers): C - <i>Ambrosia artemisiifolia</i> (Ragweed): RW - <i>Plantago major</i> (Broadleaf Plantain): BL - <i>Digitaria sanguinalis</i> (Crabgrass): CG - <i>Oxalis stricta</i> (Yellow Wood Sorrel): YS
DOI: 10.5281/zenodo.4060217
title: Raw and Intermediate data associated with "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration"

description: Data and intermediate structures for "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration" The project involves the comparison of gene expression data and estimated flux across over 44 million models of HMO biosynthesis. Here we provide intermediate objects to simplify the task of reproducing our calculations. Raw/Input data (raw.zip); data_HMO.xlsx is the central dataset including HMO concentrations and gene expression data. Other files are .csv exports from data_HMO.xlsx to circumvent a temporary bug in the xlsx reading package. They should not differ from the original file and are provided to facilitate code readability. (models_split.zip) HMO biosynthesis models generated through network generation ( /code/1.flux/A) and enumeration (/code/1.flux/B) (scores_spllit.zip) Correlation (R) and correlation p-values (P) between estimated flux and observed gene expression for corresponding genes (/code/1.flux/C) (big_mat.&lt;bin/desc&gt;.zip) Intermediate matrixes containing gene-linkage scores, models score, model classifications and other information generated/used by the Flux-Expression Comparision code (/code/3.flux_expression)
DOI: 10.5281/zenodo.4060216
title: Raw and Intermediate data associated with "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration"

description: Data and intermediate structures for "Elucidating Human Milk Oligosaccharide biosynthetic genes through network-based multiomics integration" The project involves the comparison of gene expression data and estimated flux across over 44 million models of HMO biosynthesis. Here we provide intermediate objects to simplify the task of reproducing our calculations. Raw/Input data (raw.zip); data_HMO.xlsx is the central dataset including HMO concentrations and gene expression data. Other files are .csv exports from data_HMO.xlsx to circumvent a temporary bug in the xlsx reading package. They should not differ from the original file and are provided to facilitate code readability. (models_split.zip) HMO biosynthesis models generated through network generation ( /code/1.flux/A) and enumeration (/code/1.flux/B) (scores_spllit.zip) Correlation (R) and correlation p-values (P) between estimated flux and observed gene expression for corresponding genes (/code/1.flux/C) (big_mat.&lt;bin/desc&gt;.zip) Intermediate matrixes containing gene-linkage scores, models score, model classifications and other information generated/used by the Flux-Expression Comparision code (/code/3.flux_expression)
DOI: 10.6084/m9.figshare.13024646
title: nepData

description: A dataset containing more than 17,000 validated human immunogenic neoantigens and noneffective neoepitopes within human leukocyte antigens (HLAs), curated from published literatures. Furthermore, it provides pan-cancer level predicted neoepitopes derived from 16,745 shared cancer somatic mutations, using state-of-the-art predictors.