cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j05t3j6q
title: CIL:12195, Gallus gallus gallus, memory B cell. In Cell Image Library

description: Cell of the DT40 chicken B lymphocyte line at mitosis. Z-series of widefield immunofluorescence images captured using a 100x/1.4NA planapo objective lens on a Deltavision system and deconvolved with a constrained iterative algorithm (Applied Precision). Displayed is the central z-slice. Prometaphase localization of INCENP (red) in INCENP-OFF cells expressing TrAP-INCENP F802A . Endogenous Borealin is green and DAPI (DNA) is blue. See Supplementary Fig 2C panels 1-4 in Supplementary data for Xu et al. 2009 J Cell Biol 187, 637-653.
description: Preparation: formaldehyde fixed tissue
Relation to intact cell: whole mounted tissue
Item type: charge coupled device (CCD)
Imaging mode: widefield illumination
Parameter imaged: fluorescence emission
Source of contrast: differences in adsorption or binding of stain
Visualization methods: Fluorescein (FITC); TexasRed; 4',6-diamidino-2-phenylindole (DAPI)
Processing history: constrained iterative deconvolution
Data qualification: Processed
DOI: 10.6075/j0vq31j5
title: CIL:41537, unidentified monkey, simple columnar epithelial cell. In Cell Image Library

description: Preparation: chemically fixed tissue
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: bright-field microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in adsorption or binding of stain
Visualization methods: hematoxylin; eosin
description: Histology slide highlighting simple columnar epithelium, which line the luminal surfaces of the jejunum, the middle section of the small intestine. This image is slide 29 in the University of Michigan Histology and Virtual Learning Resource. A more detailed description can be found by following the indicated url link http://histology.med.umich.edu/medical/epithelial-tissue.
DOI: 10.6075/j0mp520n
title: CIL:12153, Gallus gallus gallus, memory B cell. In Cell Image Library

description: Preparation: formaldehyde fixed tissue
Relation to intact cell: whole mounted tissue
Item type: charge coupled device (CCD)
Imaging mode: widefield illumination
Parameter imaged: fluorescence emission
Source of contrast: differences in adsorption or binding of stain
Visualization methods: Fluorescein (FITC); TexasRed; 4',6-diamidino-2-phenylindole (DAPI)
Processing history: constrained iterative deconvolution
Data qualification: Processed
description: Cell of the DT40 chicken B lymphocyte line at metaphase. Z-series of widefield immunofluorescence images captured using a 100x/1.4NA planapo objective lens on a Deltavision system and deconvolved with a constrained iterative algorithm (Applied Precision). Displayed is the central z-slice. In this INCENP-OFF cell, the inner centromere protein INCENP shown in green is barely seen. DAPI stained chromosomes are shown in blue and microtubules in red. See Fig 2A panel 5 in Xu et al. 2009 J Cell Biol 187, 637-653.
DOI: 10.15468/dl.yhfqdr
title: Occurrence Download

description: A dataset containing 6310 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is one of (DEU.7_1, DEU.12_1, DEU.1_1, DEU.11_1)",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Mantis religiosa",
 "Year 1000-2025"
 ]
}

 The dataset includes 6310 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009597-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j00k27db
title: CIL:41023, Arabidopsis thaliana. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: Hoechst 33342; FM4-64FX
description: Flower of Arabidopsis thaliana (thale cress), a popular model organism in plant biology and genetics. Image captured using confocal microscopy using a 20x objective lens. The membrane is stained red with dye FM4-64FX, and DNA is stained blue with Hoechst 33342. Eighth Prize, 2009 Olympus BioScapes Digital Imaging Competition©.
DOI: 10.6075/j0dn44d8
title: CIL:41126, Enterobacteria phage T4. In Cell Image Library

description: Images collected on a JEOL 1010 TEM. Please refer to http://remf.dartmouth.edu:8080/EM-Wiki for details on specimen preparation.
description: Preparation: whole mounted tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Processing history: unprocessed raw data
description: Transmission electron microscope image of T4Phage, a bacteriophage that infects Escherichia coli bacteria.This image is part of an image group (CIL:41124-41131).
DOI: 10.6075/j0cn72pv
title: CIL:41041, Gallus gallus gallus, early embryonic cell. In Cell Image Library

description: See: T. Morimoto et al. 1972. Ribosome crystallization in chicken embryos. I. Isolation, characterization, and in vitro activity of ribosome tetramers. J Cell Biol 52:355-366.
B. Byers 1966. Ribosome crystallization induced in chick embryo tissues by hypothermia. J Cell Biol 30:C1-6. 

Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi
description: Transmission electron micrograph of a section through a 3-day old chick embryo obtained from an egg that was maintained in a cold room for 24 hrs. Ribosomes have crystallized both in the cytoplasm and nucleus.
description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Processed
DOI: 10.6075/j00z723x
title: CIL:41048, Diplococcus pneumoniae. In Cell Image Library

description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Processed
description: Transmission electron micrograph of a thin section through the bacterium Diplococcus pneumoniae. The fibrous nucleoid is centrally located, surrounded by cytoplasm containing numerous ribosomes.
description: Micrograph recorded at a magnification of 64,000x. Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
DOI: 10.6075/j01z436v
title: CIL:41047, Diplococcus pneumoniae. In Cell Image Library

description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Processed
description: Micrograph recorded at a magnification of 90,000x. Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
description: Transmission electron micrograph of a thin section through the bacterium Diplococcus pneumoniae in the process of division. The fibrous nucleoids are seen in the center of the two daughter cells, surrounded by cytoplasm containing numerous ribosomes.
DOI: 10.6075/j0fb51r3
title: CIL:41046, Rattus rattus, pancreatic cell. In Cell Image Library

description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Data qualification: Processed
description: Transmission electron micrograph of a thin section of rat pancreas showing a high magnification view of rough (granular) endoplasmic reticulum. Membrane-bounded cisternae are studded with ribsomes which, in favorable views show a cleft between the large and small subunits, with the large subunit connecting the membrane.
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi
DOI: 10.6075/j0pr7ttk
title: CIL:41025, Homo sapiens, motor neuron, stem cell. In Cell Image Library

description: Amyotrophic Lateral Sclerosis (ALS, also known as Lou Gehrig's Disease) motor neurons created from induced Pluripotent Stem (iPS) cells made from the skin cells of an 83-year-old ALS patient. iPS cells gives scientists an opportunity to study ALS in affected human motor neurons and other patient-derived brain cells. Tenth Prize, 2009 Olympus BioScapes Digital Imaging Competition©.
description: Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
DOI: 10.6075/j0vt1qz3
title: CIL:41022, Danio rerio, sensory neuron. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: Yellow fluorescent proteins from Aequorea; Cyan fluorescent proteins from Aequorea; Red fluorescent proteins from Anthozoa
description: Sensory axons (long, slender nerve fibers) covering the tail of a 3- day-old larval zebrafish. This "Brainbow" image was collected using confocal microscopy. In the Brainbow technique (Nature, 2007), cells randomly choose combinations of red, yellow and cyan fluorescent proteins, so that they each glow a particular color. This provides a way to distinguish neighboring cells of the nervous system and follow their pathways. Seventh Prize, 2009 Olympus BioScapes Digital Imaging Competition©.
DOI: 10.6075/j0319tqg
title: CIL:41021, Physalia physalis, nematocyst. In Cell Image Library

description: Tentacle of Portuguese Man o' War, Physalia physalis imaged with a stereomicroscope at 30x. Notorious for its painful, powerful sting, the Portuguese Man o' War has a gas filled floating chamber that supports the tentacles, which bear nematocytes (stinging cells). Shown are the pink batteries of stinging cells and a delicate muscular band responsible for the high contractibility of the tentacles. 2009 Olympus BioScapes Digital Imaging Competition©.
description: Relation to intact cell: whole mounted
Item type: recorded image
Imaging mode: bright-field microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in intrinsic optical density
DOI: 10.15468/dl.29gm2s
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Sanguisorba officinalis"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009598-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j06t0kd0
title: CIL:41000, Canis lupus familiaris, kidney cell. In Cell Image Library

description: Cells were grown for 5 days prior to imaging with apical TIRF microscopy. Images were taken with a Leica AM TIRF MC. Penetration depth: 90 nm. See http://www.leica-microsystems.com/science-lab/protein-transport-processes-at-the-apical-membrane-of-polarized-epithelial-cells-applications-for-tirf-microscopy/ for additional details.
description: Total internal reflection (TIRF) micrograph of MDCK cells stably transfected with the apical membrane protein P75-GFP (green) and Phalloidin staining of the actin cytoskeleton (red) in close proximity or inside the apical plasma membrane.
description: Preparation: formaldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: total internal reflection (TIRF)
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein; distribution of epitope
Visualization methods: EGFP; phalloidin
Processing history: unprocessed
DOI: 10.6075/j0fn152c
title: CIL:40996, Rattus rattus, fibroblast. In Cell Image Library

description: Transmission electron micrograph of a thin section of a fibroblast from the ventricular myocardium of a rat showing a transverse view of rough endoplasmic reticulum (RER, sometimes termed granular endoplasmic reticulum). The 'rough' or 'granular' term refers to the membrane-attached polyribosomes (also known as polysomes). RER-associated polyribosomes are the sites of synthesis of proteins secreted into the RER cisternae and destined for export from the cell.
description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; osmium tetroxide; lead salt
Data qualification: Processed
description: Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
DOI: 10.6075/j00z725t
title: CIL:41008, Tribulus. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: modes of light microscopy; epi-illumination
Parameter imaged: absorption of illumination
Source of contrast: differences in intrinsic optical density
Processing history: axial projection
description: Primordium (bud) of the weedy flower Tribulus sp. at its final stages of development. More than 100 z-stacks were combined to produce the final image, which was captured using epiillumination. Fifth Prize, 2010 Olympus BioScapes Digital Imaging Competition©.
DOI: 10.6075/j0nk3ddp
title: CIL:41122, Enterobacteria phage T4, Escherichia coli. In Cell Image Library

description: Transmission electron microscope image of T4Phage on the surface of Escherichia coli bacteria. T4Phage is a bacteriophage that infects E. coli bacteria.
description: Images collected on a JEOL 1010 TEM. Please refer to http://remf.dartmouth.edu:8080/EM-Wiki for details on specimen preparation.
description: Preparation: whole mounted tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt
Processing history: unprocessed raw data
DOI: 10.6075/j09c6w76
title: CIL:41104, Chlorocebus aethiops. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: Bessel Sheet Microscpy; Two-Photon Microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EmeraldFP
Processing history: maximum likelihood deconvolution; maximum intensity projection; volume rendering
description: Dynamics of membrane ruffling (top) and intracellular vesicle motion (bottom) in a cSrc-transfected COS-7 cell. Images were collected with a Bessel Beam Microscope using two photon excitation. This form of microscopy provides extraordinary 4D resolution, including the individual "slices" shown in the lower right hand panel. This video corresponds to Figure 4c and Supplementary Video 6 in Nat Methods. 2011 May;8(5):417-23. Epub 2011 Mar 4. The video is a deconvolved, maximum projection, volume rendering of slices that were collected in a 48 x 46 x 42 um3 image volume with 116 x 116 x 150 nm3 voxel sizes. The video has a frame rate of 37 msec, and a volume is collected every 10.2 sec.
description: Scanned Bessel beams can be used to generate thin light sheets that, unlike Gaussian beams, can be decoupled from their longitudinal extent. This video is from a manuscript that describes the use of scanned Bessel beams of higher NA to create light sheets sufficiently thin to achieve isotropic 3D resolution and improve the expenditure of the photon budget to the point at which hundreds of 3D image stacks comprising tens of thousands of frames can be acquired from single living cells at rates of nearly 200 frames/sec.
DOI: 10.15468/dl.udmznb
title: Occurrence Download

description: A dataset containing 10815 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Citrus aurantium"
 ]
}

 The dataset includes 10815 records from 608 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009595-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6075/j0cj8c8j
title: CIL:41066, Homo sapiens, epithelial cell. In Cell Image Library

description: Fluorescent micrograph of A549 cells (adenocarcinomic human alveolar basal epithelial cells) showing the nucleus (blue) and mRNAs of TFRC (transferrin receptor) identified by fluorescently labeled oligonucleotides.
description: Preparation: formaldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific nucleic acid sequence; distribution of epitope
Visualization methods: 4',6-diamidino-2-phenylindole (DAPI); fluorescently labeled oligonucleotides; quasar 570
Processing history: unprocessed raw data
DOI: 10.6075/j0gb22wg
title: CIL:41063, Licmophora juergensii, Rhodophyta, Cocconeis, Cyanobacteria. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
description: Living Licmophora juergensii on red alga (Rhodophyta), together with the diatom Cocconeis and filamentous cyanobacterial colonies. Licmophora cells can move to locate a place with suitable light exposure. They then produce a mucilaginous stalk for Ô¨Åxation on the substratum. This multi-layer image captured using differential interference contrast. The sample was collected from Bodden, the brackish waters lying between the isles of Hiddensee and Rugia (German Baltic Sea). Fourth Prize, 2010 Olympus BioScapes Digital Imaging Competition©.
DOI: 10.6075/j09g5kpz
title: CIL:41119, Fungia. In Cell Image Library

description: Solitary coral, Fungia sp. The tentacle tips, called acrospheres, are visibly enhanced using a technique developed for doing epfluorescence without a barrierfilter. Third Prize, 2010 Olympus BioScapes Digital Imaging Competition©.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: reflected illumination; epifluorescence without barrier filter
Parameter imaged: fluorescence emission
DOI: 10.6075/j0vd6xb8
title: CIL:41053, Chlamydomonas reinhardtii. In Cell Image Library

description: Image recorded on 10/21/66 at a magnification of 116,000x. Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; lead salt
Data qualification: Processed
description: Electron micrograph of a thin section through a portion of the chloroplast of the unicellular green alga Chlamydomonas. Free ribosomes are seen as dark particles within the chloroplast stroma. The image is of remarkably high quality considering the recording date in 1966 before the development of current fixation techniques.
DOI: 10.6075/j0nz86dw
title: CIL:41051, Chlamydomonas reinhardtii. In Cell Image Library

description: Preparation: chemically fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: uranyl salt; lead salt
Data qualification: Processed
description: Image recorded on 08/23/1974. Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi.
description: Electron micrograph of a thin section through a portion of the chloroplast of the unicellular green alga Chlamydomonas. Free ribosomes are seen as dark particles within the chloroplast stroma. They are considerably smaller than the cytoplasmic ribosomes seen at lower left. Ribosomes from chloroplasts, mitochondria, and prokaryotes sediment at 70S, compared to 80S for cytoplasmic ribosomes.
DOI: 10.6075/j05q4txs
title: CIL:41018. In Cell Image Library

description: Nucleus of a plant cell showing synaptonemal complex, a ladder- like protein structure that forms between pairing chromosomes during meiosis (the cell division required for reproduction). This image was captured with 3D structured illumination, which has a lateral resolution of approximately 120 nm. The two parallel axes of this complex, which run the length of each chromosome, are seen as two threads spaced 100-200 nm apart and twisting around each other in a helix. 2nd Prize, 2009 Olympus BioScapes Digital Imaging Competition©.
description: Item type: recorded image
Imaging mode: structured illumination microscopy (SIM)
Parameter imaged: fluorescence emission
Processing history: 3D SIM reconstruction
DOI: 10.6075/j04q7stv
title: CIL:41043, Mus musculus, early embryonic cell. In Cell Image Library

description: See: T. Morimoto et al. 1972. Ribosome crystallization in chicken embryos. I. Isolation, characterization, and in vitro activity of ribosome tetramers. J Cell Biol 52:355-366.
B. Byers 1966. Ribosome crystallization induced in chick embryo tissues by hypothermia. J Cell Biol 30:C1-6. 

Original 3.25 in. x 4 in. lantern slides were scanned at 600dpi
description: Transmission electron micrograph of a negatively stained preparation of ribosomes isolated from a 3-day old chick embryo that was maintained in a cold room for 24 hrs. The ribosome crystals seen in thin sections of these cells (see CIL:41041)are seen to be primarily tetramers.
description: Relation to intact cell: isolated subcellular component
Item type: film
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain
Visualization methods: negative staining
Data qualification: Processed
DOI: 10.6075/j0h99425
title: CIL:41017, Daphnia atkinsoni. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
description: Laser scanning confocal micrograph of a water flea, Daphnia atkinsoni. This specimen has a "crown of thorns," a defensive trait induced in offspring only when the 
 parents sense chemical cues released by one of their main 
 predators, the tadpole shrimp Triops cancriformis. The water flea's exoskeleton (exterior structure, green) and subcellular details within the organism (nuclei - tiny blue dots) are both visible. First Prize, 2009 Olympus BioScapes 
 Digital Imaging Competition©.