cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.106631.v9
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106409
title: Associated sound and target image files.

description: Paired sound and image files necessary for running all association tasks, frequency tone ranges used for testing frequency tuning of neurons (not discussed in the text) and species-specific communication calls.
DOI: 10.6084/m9.figshare.106620.v7
title: Lab Notebook, 2012

description: Permanent archive of Carl Boettiger's open lab notebook entries for the year 2012 (http://www.carlboettiger.info/archives.html). Entries are archived in plain text UTF-8. 2012.tar.gz has all entries as written in full (X)HTML5 version of the notebook with embedded RDFa. Images are embedded in the files as data URIs and equations are provided in MathML. Meets the goals of the Data Management Plan: http://www.carlboettiger.info/2012/10/09/data-management-plan.html The more recent (second) 2012.tar.gz archive contains both the Jekyll sources and HTML site for the notebook entries in 2012, corresponding to https://github.com/cboettig/2012/releases/tag/2012-archive, which can be viewed at http://carlboettiger.info/2012
DOI: 10.6084/m9.figshare.106404
title: Interactions: The Cover Stories (data)

description: A journal cover is usually eye-catching and compelling, but what will become of it as electronic journals overtake traditional print publishing? Articles that are featured on journal covers are given a prominent place in the public eye, but in the era of PDFs, does being a featured article guarantee a high Altmetric score? We collected all of the cover articles in Nature and Science that were published within the past year (Jan 2012 - Jan 2013) and looked at their Altmetric scores. These data appear in companion to a blog post on the Altmetric blog.
DOI: 10.6084/m9.figshare.106409.v1
title: Associated sound and target image files.

description: Paired sound and image files necessary for running all association tasks, frequency tone ranges used for testing frequency tuning of neurons (not discussed in the text) and species-specific communication calls.
DOI: 10.6084/m9.figshare.106631.v10
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106620.v6
title: Lab Notebook, 2012

description: Permanent archive of Carl Boettiger's open lab notebook entries for the year 2012 (http://www.carlboettiger.info/archives.html). Entries are archived in plain text UTF-8. 2012.tar.gz has all entries as written in full (X)HTML5 version of the notebook with embedded RDFa. Images are embedded in the files as data URIs and equations are provided in MathML. Meets the goals of the Data Management Plan: http://www.carlboettiger.info/2012/10/09/data-management-plan.html
DOI: 10.6084/m9.figshare.106404.v1
title: Interactions: The Cover Stories (data)

description: A journal cover is usually eye-catching and compelling, but what will become of it as electronic journals overtake traditional print publishing? Articles that are featured on journal covers are given a prominent place in the public eye, but in the era of PDFs, does being a featured article guarantee a high Altmetric score? We collected all of the cover articles in Nature and Science that were published within the past year (Jan 2012 - Jan 2013) and looked at their Altmetric scores. These data appear in companion to a blog post on the Altmetric blog.
DOI: 10.6084/m9.figshare.106631.v11
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106343
title: Probing Ultrafast Dynamics with Time-resolved Multi-dimensional Coincidence Imaging: Butadiene

description: Manuscript, 3D interactive figures & data [to follow] reporting time-resolved coincidence imaging of butadiene.<br>Published article:J. Mod. Opt. 60, 1409–1425 (2013), see link below.
DOI: 10.6084/m9.figshare.106631.v12
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106343.v1
title: Probing Ultrafast Dynamics with Time-resolved Multi-dimensional Coincidence Imaging: Butadiene

description: Manuscript, 3D interactive figures & data [to follow] reporting time-resolved coincidence imaging of butadiene.<br>Published article:J. Mod. Opt. 60, 1409–1425 (2013), see link below.
DOI: 10.6084/m9.figshare.106340
title: Corpas Family Trio Exome Data

description: Fastq files for whole exome sequencing from the Corpas family: mother, father, daughter. The data comes from 3 human saliva samples. Exome capture was performed using Agilent SureSelect Human All Exon 44. The captured material was sequenced using Illumina’s HiSeq technology. The data is expected to have 30X effective mean depth per sample, having removed adaptor pollution and low quality sequence. For a more detailed explanation please refer to : http://manuelcorpas.com/crowdsourcing/
DOI: 10.6084/m9.figshare.106631.v13
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106337
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106387.v2
title: J2a-M410 subclades and clusters overview

description: Overview of the phylogeny sub of J2a-M410 as researched by citizen scientist projects: FTDNA Projects (SNP results), Genographic Project Geno 2.0, Facebook J2 group, Forums, etc.
DOI: 10.6084/m9.figshare.106631.v14
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106337.v1
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106336
title: Gaussian Job Archive for C30H54BGeLi2O6(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106340.v1
title: 6 files with 1GB per file

description: Fastq files for whole exome sequencing from the Corpas family: mother, father, daughter. The data comes from 3 human saliva samples. Exome capture was performed using Agilent SureSelect Human All Exon 44. The captured material was sequenced using Illumina’s HiSeq technology. The data is expected to have 30X effective mean depth per sample, having removed adaptor pollution and low quality sequence.
DOI: 10.6084/m9.figshare.106335
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106336.v1
title: Gaussian Job Archive for C30H54BGeLi2O6(1-)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106387.v3
title: J2a-M410 subclades and clusters overview

description: Overview of the phylogeny sub of J2a-M410 as researched by citizen scientist projects: FTDNA Projects (SNP results), Genographic Project Geno 2.0, Facebook J2 group, Forums, etc.<br>v1.2 Update 11 Jan. 2013: Cluster *H is Z2221+
DOI: 10.6084/m9.figshare.106334
title: Gaussian Job Archive for C28H30O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106335.v1
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106631.v15
title: How to design a genetic mating scheme: a basic training package for Drosophila genetics

description: <strong>Supplementary files for:</strong> Roote, J., and Prokop, A. (2013). How to design a genetic mating scheme: a basic training package for <em>Drosophila</em> genetics. G3 (Bethesda) 3, 353-358. <strong>Abstract:</strong> <em>Drosophila melanogaster</em> is a powerful model organism for biological research. The essential<br>and common instrument of fly research is genetics, the art of applying Mendelian rules in the specific context of Drosophila with its unique classical genetic tools and the breadth of modern genetic tools and strategies brought in by molecular biology, transgenic technologies and the use of recombinases. Training newcomers to fly genetics is a complex and time-consuming task but too important to be left to chance. Surprisingly, suitable training resources for beginners currently are not available. Here we provide a training package for basic Drosophila genetics, designed to ensure that basic knowledge on all key areas is covered while reducing the time invested by trainers. First, a manual introduces to fly history, rationale for mating schemes, fly handling, Mendelian rules in fly, markers and balancers, mating scheme design, and transgenic technologies. Its self-study is followed by a practical training session on gender and marker selection, introducing to real flies in the laboratory. Next, through self-study of a PowerPoint presentation, trainees are guided step-by-step through a mating scheme. Finally, to consolidate knowledge, trainees are asked to design similar mating schemes reflecting routine tasks in a fly laboratory. This exercise requires individual feedback but also provides unique opportunities for trainers to spot weaknesses and strengths of each trainee and take remedial action. This training package is being successfully applied at the Manchester fly facility (5th link below) and may serve as a model for further training resources covering other aspects of fly research. A light version of the manual for teaching on undergraduate genetics courses or training short-term project students can be accessed through the last link below.
DOI: 10.6084/m9.figshare.106321
title: Number of downloads for each project tagged with "Bioinformatics" on code.google.com

description: Implementation of my idea on biostar "Where/how to assess which bioinformatics tools/databases are most used/accessed?" : http://www.biostars.org/p/60334/#60341 . The script gets the projects tagged bioinformatics on google-code and get the number of downloads. Of course, that doesn't give the number of "checkout' of each project, etc...
DOI: 10.6084/m9.figshare.106334.v1
title: Gaussian Job Archive for C28H30O4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106318
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106317
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.106318.v1
title: Gaussian Job Archive for C12H14Cl2N2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.