cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10122596
title: Data underpinning "Transmon platform for quantum computing challenged by chaotic fluctuations"

description: Data set underlying the figures in the article "Transmon platform for quantum computing challenged by chaotic fluctuations" (https://doi.org/10.1038/s41467-022-29940-y)
From the perspective of many-body physics, the transmon qubit architectures currently developed for quantum computing are systems of coupled nonlinear quantum resonators. A certain amount of intentional frequency detuning ('disorder') is crucially required to protect individual qubit states against the destabilizing effects of nonlinear resonator coupling. In our paper, we investigate the stability of this variant of a many-body localized phase for system parameters relevant to current quantum processors developed by the IBM, Delft, and Google consortia, considering the cases of natural or engineered disorder. Applying three independent diagnostics of localization theory — a Kullback–Leibler analysis of spectral statistics, statistics of many-body wave functions (inverse participation ratios), and a Walsh transform of the many-body spectrum — we find that some of these computing platforms are dangerously close to a phase of uncontrollable chaotic fluctuations.
DOI: 10.5281/zenodo.10122597
title: Data underpinning "Transmon platform for quantum computing challenged by chaotic fluctuations"

description: Data set underlying the figures in the article "Transmon platform for quantum computing challenged by chaotic fluctuations" (https://doi.org/10.1038/s41467-022-29940-y)
From the perspective of many-body physics, the transmon qubit architectures currently developed for quantum computing are systems of coupled nonlinear quantum resonators. A certain amount of intentional frequency detuning ('disorder') is crucially required to protect individual qubit states against the destabilizing effects of nonlinear resonator coupling. In our paper, we investigate the stability of this variant of a many-body localized phase for system parameters relevant to current quantum processors developed by the IBM, Delft, and Google consortia, considering the cases of natural or engineered disorder. Applying three independent diagnostics of localization theory — a Kullback–Leibler analysis of spectral statistics, statistics of many-body wave functions (inverse participation ratios), and a Walsh transform of the many-body spectrum — we find that some of these computing platforms are dangerously close to a phase of uncontrollable chaotic fluctuations.
DOI: 10.6084/m9.figshare.24559894
title: Supporting information

description: Files used in "Cat control and cat abundance" (cat abundance file) and in "Survival analysis" (four other files) sections.
DOI: 10.6084/m9.figshare.24559894.v1
title: Untitled Item

description: File used in "Cat control and cat abundance" section.
DOI: 10.5281/zenodo.10124696
title: Dataset related to article "A chromEM-staining protocol optimized for cardiac tissue"

description: This record contains raw data related to article "A chromEM-staining protocol optimized for cardiac tissue"
Three-dimensional (3D) chromatin organization has a key role in defining the transcription program of cells during development. Its alteration is the cause of gene expression changes responsible for several diseases. Thus, we need new tools to study this aspect of gene expression regulation. To this end, ChromEM was recently developed: this is an electron-microscopy staining technique that selectively marks nuclear DNA without altering its structure and, thus, allows better visualization of 3D chromatin conformation. However, despite increasingly frequent application of this staining technique on cells, it has not yet been applied to visualize chromatin ultrastructure in tissues. Here, we provide a protocol to carry out ChromEM on myocardial tissue harvested from the left ventricles of C57BL/6J mice and use this in combination with transmission electron microscopy (TEM) to measure some morphological parameters of peripheral heterochromatin in cardiomyocytes. This protocol could also be used, in combination with electron tomography, to study 3D chromatin organization in cardiomyocytes in different aspects of heart pathobiology (e.g., heart development, cardiac aging, and heart failure) as well as help to set-up ChromEM in other tissues.
DOI: 10.5281/zenodo.10124697
title: Dataset related to article "A chromEM-staining protocol optimized for cardiac tissue"

description: This record contains raw data related to article "A chromEM-staining protocol optimized for cardiac tissue"
Three-dimensional (3D) chromatin organization has a key role in defining the transcription program of cells during development. Its alteration is the cause of gene expression changes responsible for several diseases. Thus, we need new tools to study this aspect of gene expression regulation. To this end, ChromEM was recently developed: this is an electron-microscopy staining technique that selectively marks nuclear DNA without altering its structure and, thus, allows better visualization of 3D chromatin conformation. However, despite increasingly frequent application of this staining technique on cells, it has not yet been applied to visualize chromatin ultrastructure in tissues. Here, we provide a protocol to carry out ChromEM on myocardial tissue harvested from the left ventricles of C57BL/6J mice and use this in combination with transmission electron microscopy (TEM) to measure some morphological parameters of peripheral heterochromatin in cardiomyocytes. This protocol could also be used, in combination with electron tomography, to study 3D chromatin organization in cardiomyocytes in different aspects of heart pathobiology (e.g., heart development, cardiac aging, and heart failure) as well as help to set-up ChromEM in other tissues.
DOI: 10.25403/upresearchdata.23634318
title: Algebraic word problem solving achievement test and strategies

description: The data are from the Algebraic word problem-solving achievement test, which tested the learners' problem-solving skills with Polya’s (1945) four-step problem-solving model. This is the most well-known mathematical problem-solving model, which is understanding the problem, devising a plan, carrying out the plan, and rechecking (Looking back). The data were analysed using the modified rubric from Charles (1987) and Sumaryanta (2015) based on Polya’s framework. The attached file also consists of the data on the problem-solving strategies used by the learners from Krulik and Rudnick (1996) when solving algebraic word problems. Interview data is included in the sheet. Pseudonyms were used on the interview transcribed data.
DOI: 10.25403/upresearchdata.23634318.v1
title: Algebraic word problem solving achievement test and strategies

description: The data are from the Algebraic word problem-solving achievement test, which tested the learners' problem-solving skills with Polya’s (1945) four-step problem-solving model. This is the most well-known mathematical problem-solving model, which is understanding the problem, devising a plan, carrying out the plan, and rechecking (Looking back). The data were analysed using the modified rubric from Charles (1987) and Sumaryanta (2015) based on Polya’s framework. The attached file also consists of the data on the problem-solving strategies used by the learners from Krulik and Rudnick (1996) when solving algebraic word problems. Interview data is included in the sheet. Pseudonyms were used on the interview transcribed data.
DOI: 10.5281/zenodo.10124444
title: Climate response to vegetation removal on different continents

description: Data generated in this study are archived here.
DOI: 10.5517/ccdc.csd.cc2bm8qz
title: CCDC 2163481: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8r0
title: CCDC 2163482: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8t2
title: CCDC 2163484: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8v3
title: CCDC 2163485: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8w4
title: CCDC 2163486: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8x5
title: CCDC 2163487: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8y6
title: CCDC 2163488: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm8z7
title: CCDC 2163489: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm909
title: CCDC 2163490: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bm91b
title: CCDC 2163491: Experimental Crystal Structure Determination

description: Related Article: Rasika Janadari Kariyawasam, Ramin Zibaseresht, Matthew Ian James Polson, Joanna C.C. Houlihan, Jan L. Wikaira, Richard M Hartshorn|2023|Dalton Trans.|52|16364|doi:10.1039/D3DT01634J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24559909
title: Supporting information for the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain".

description: The "input" subfolder within the support files.zip file contains the protein structure files, topology files, and parameter files required for running the molecular dynamics simulations with GROMACS, as mentioned in the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain". The "rmsd" subfolder includes the root mean square deviation (RMSD) data from all the molecular dynamics simulations, which were run independently in triplicates. The support_information.pdf contains detailed RMSD data from the molecular dynamics simulation process of the RBD-ACE2 binding for various variants, statistics of hydrogen bonds and salt bridges, residue contact maps, and detailed data from the alanine scanning residue energy decomposition.
DOI: 10.6084/m9.figshare.24559909.v1
title: Supporting information for the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain".

description: The "input" subfolder within the support files.zip file contains the protein structure files, topology files, and parameter files required for running the molecular dynamics simulations with GROMACS, as mentioned in the paper "Molecular Insights into the Variability in Infection and Immune Evasion Capabilities of SARS-CoV-2 Variants: A Sequence and Structural Investigation of the RBD Domain". The "rmsd" subfolder includes the root mean square deviation (RMSD) data from all the molecular dynamics simulations, which were run independently in triplicates. The support_information.pdf contains detailed RMSD data from the molecular dynamics simulation process of the RBD-ACE2 binding for various variants, statistics of hydrogen bonds and salt bridges, residue contact maps, and detailed data from the alanine scanning residue energy decomposition.
DOI: 10.5281/zenodo.10124615
title: HOLOCENE OVERWASH OCCURRENCE AGE IN THE ISUMI RIVER LOWLAND, EASTERN BOSO PENINSULA, JAPAN

description: Analysis of the chronological data and observation of a lagoonal sediment core reveal sand washover events between around 2.4 to 2.5 cal. ky BP in the Isumi River lowland. We conducted radiocarbon dating with AMS and constructed an age-depth model using the latest calibration curve and appropriate model routine. In the middle to lower part of the core, dark-gray sand layers are repeatedly deposited. Sand layers may exhibit an erosional surface at the base with fining upward grading. The overwash layers are composed of well-rounded sand with occasional gravel, indicative of transportation. overwash sediment characteristics are consistent with proximal marine deposits, suggesting an ocean origin (though riverine sediment is also similar in character). The age-depth model indicates very high sediment accumulation rates associated with overwash deposits. Based on the amount of accumulated sediment, relatively large scale redeposition events occurred during this period but more information is needed to constrain the mechanism(s) causing the events. We also present a local reservoir age correction compatible with the Marine20 calibration curve.
DOI: 10.5281/zenodo.10124616
title: HOLOCENE OVERWASH OCCURRENCE AGE IN THE ISUMI RIVER LOWLAND, EASTERN BOSO PENINSULA, JAPAN

description: Analysis of the chronological data and observation of a lagoonal sediment core reveal sand washover events between around 2.4 to 2.5 cal. ky BP in the Isumi River lowland. We conducted radiocarbon dating with AMS and constructed an age-depth model using the latest calibration curve and appropriate model routine. In the middle to lower part of the core, dark-gray sand layers are repeatedly deposited. Sand layers may exhibit an erosional surface at the base with fining upward grading. The overwash layers are composed of well-rounded sand with occasional gravel, indicative of transportation. overwash sediment characteristics are consistent with proximal marine deposits, suggesting an ocean origin (though riverine sediment is also similar in character). The age-depth model indicates very high sediment accumulation rates associated with overwash deposits. Based on the amount of accumulated sediment, relatively large scale redeposition events occurred during this period but more information is needed to constrain the mechanism(s) causing the events. We also present a local reservoir age correction compatible with the Marine20 calibration curve.
DOI: 10.5255/ukda-sn-856794
title: Vienna Public Health Equity Project, 2023

description: Contemporary public health and healthcare are navigating a complex landscape marked by limited resources, conflicting individual and collective preferences, and the challenge of improving efficiency while maintaining quality. This scenario raises a multitude of ethical and moral questions, necessitating state intervention through stewardship and governance. Governments worldwide strive to enhance utility, value for money, and health equity, guided by principles of distributive and procedural justice. The moral underpinnings of public health activities, such as overall benefit, collective efficiency, distributive fairness, and harm prevention, are crucial in addressing global health resource challenges. These considerations encompass efficiency, equity, rights, and other ethical issues. The distribution of resources, whether based on noncorrelative or correlative principles, is a key aspect of justice in public health. Public health efforts are also focused on mitigating the adverse effects of socio-economic determinants on health outcomes and addressing health disparities. This is particularly vital for vulnerable, high-risk, and marginalized groups who face unique challenges like historic injustices, discrimination, and specific social or physical needs. The project at hand delves into the concepts outlined by Peragine, focusing on measuring individual opportunity sets, assessing inequality in opportunity distribution, and designing mechanisms to enhance 'opportunity equality'. A representative survey of Vienna's population (N=1411) explores various dimensions: Socio-demography: This module gathers data on gender, age, education, and migration background. Health: It assesses individual health status, chronic conditions, multimorbidity, and health-related behaviors. Socio-economic status: This includes occupation, net income, asset wealth, and other indicators of social or economic capital. Access to healthcare: Respondents provide insights into their experiences with healthcare access, including barriers and needs. Affordability of healthcare: Questions revolve around health-related expenditures and attitudes towards healthcare coverage and benefits. Provision of healthcare: This focuses on the quality and timeliness of medical interventions and healthcare services. Justice-Fairness attitudes: The survey captures attitudes towards social/distributive justice and fairness in socio-economic and health-related aspects. Preferences for health policy and redistribution: This module explores public vs. private health insurance preferences and allocation preferences for the public health budget. Solidarity & Reciprocity: Estimating solidarity through measures of social trust, cooperative behavior, sharing, helping, and expressions of solidarity. Overall, this comprehensive approach aims to address the intricate interplay of ethical, moral, and practical considerations in public health and healthcare, emphasizing the need for equitable and just solutions in a resource-constrained environment.
DOI: 10.5281/zenodo.10124846
title: Cystic Fibrosis Diagnosis in Newborns with Machine Learning]{Newborn Cystic Fibrosis Diagnosis Made Accurate and Efficient with Machine Learning to Reduce False Positives in IRT-Trypsinogen Immunoreactive Screening Program

description: Datasets to training models in this article and generator code.
DOI: 10.5281/zenodo.8351810
title: Cystic Fibrosis Diagnosis in Newborns with Machine Learning]{Newborn Cystic Fibrosis Diagnosis Made Accurate and Efficient with Machine Learning to Reduce False Positives in IRT-Trypsinogen Immunoreactive Screening Program

description: Datasets to training models in this article and generator code.
DOI: 10.5281/zenodo.8351811
title: Cystic Fibrosis Diagnosis in Newborns with Machine Learning]{Newborn Cystic Fibrosis Diagnosis Made Accurate and Efficient with Machine Learning to Reduce False Positives in IRT-Trypsinogen Immunoreactive Screening Program

description: Datasets to training models in this article.
DOI: 10.57745/yr5ncg
title: Map_Montpellier.html

description: Zoomable map showing the geographic position and characteristics (species, date of observation and number of tents) of each tree included in the survey conducted in Montpellier agglomeration. Information appear when the operator points to the tree with the mouse. Target trees are represented in blue, neighbors within the cluster are in green.
DOI: 10.57745/yzg0va
title: Map_La_Baule.html

description: Zoomable map showing the geographic position and characteristics (species, date of observation and number of tents) of each tree included in the survey conducted in La Baule agglomeration. Information appear when the operator points to the tree with the mouse. Target trees are represented in blue, neighbors within the cluster are in green.