cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.fk81jf2/1
title: Ecology and Evolution Paper Data File for herbaceous, soil and arthropds

description: Herbaceous vegetation abundance together with soil nutrient results in excel sheet 1. In Sheet 2 there is below ground arthropod abundance and in sheet 3 there is above ground arthropod abundance.
DOI: 10.5061/dryad.fq92325/1
title: Water quality and African elephant abundance at waterholes in Kruger National Park

description: Water quality and African elephant abundance at waterholes in Kruger National Park. Collected June-July 2016 from the field.
DOI: 10.5061/dryad.gp50t40/1
title: Data for geometric and traditional morphometrics

description: It includes raw landmark coordinates, semilandmarks curve, a table with classifiers (taxon, locality, and region) for specimens, a character matrix used in traditional morphometrics, and the R script for data analysis.
DOI: 10.5061/dryad.jb8v1nh/1
title: Accelerometer, pressure and temperature data

description: Data files in plain text containing detailed accelerometer, pressure and temperature data for the red-backed shrike and the great reed warbler. First column is a timestamp. Act0 means number of sequences that scored 0 during the preceding hour (12 measurement sequences). Next column Act1 to Act5 follow the same way. Column “check” is the sum of all activity counts and should be 12 if sampling worked as intended. “Temp” gives temperature in °C and “P” barometric pressure in mbar. Data for the red-backed shrike are given first (indicated with rbs), and the same columns are repeated afterwards for the great reed warbler (indicated by grw). See doi: 10.1111/jav.01821 for details on data collection and compilation.
DOI: 10.5061/dryad.pt4hb40/1
title: Zomba

description: Field data for Bicyclus safitza from Zomba, Malawi.
DOI: 10.5061/dryad.pt4hb40/2
title: RN DATA FINAL

description: Temperature reaction norm for B. anynana, B.safitza and M.perseoides.
DOI: 10.5061/dryad.rn867/1
title: Data from: BNPd Single-atom Catalysts for Selective Hydrogenation of Acetylene to Ethylene: A DFT Study

description: This file contains data of the most stable energy of the various reactants, intermediates, transient states and products of the acetylene selective hydrogenation, and the energy barriers of corresponding reaction path. Moreover, it contains the orbital energies on the HOMO and LUMO, the △Eg between HOMO and LUMO. It also contains the data for Supplementary material
DOI: 10.5061/dryad.tv45802/2
title: life history traits data
DOI: 10.17632/pfkmhnvht6.1
title: Data for: Statin-Associated Cardiomyopathy Responds to Statin Withdrawal and Administration of Coenzyme Q10

description: SACM data DEIDENTIFIED.csv: data file which includes de-identified patient clinical data, echocardiographic data, and plasma data. The dates of service (DOS) , along with patient names, have have been removed from this data set for de-identification purposes. Each row represents a clinic visit in ascending chronological order, grouped by patient.
DOI: 10.5061/dryad.01vm510/1
title: Engesser et al 2018_Supporting dataset
DOI: 10.5061/dryad.07s9f96/1
title: Octopodoidea phylogeny

description: The Octopodoidea phylogeny was inferred using three mitochondrial genes – 16S rRNA (16S), Cytochrome Oxidase I (COI) and Cytochrome Oxidase III (COIII) – and one nuclear gene – Rhodopsin (RHO) – for a total of 61 species.  The phylogenetic trees based on a Bayesian framework using Mr. Bayes v3.2 (Ronquist et al. 2012) were performed by means of MCMCMC (Metropolis Coupling Monte Carlo Markov Chains), four chains were run using 10,000,000. The trees were rooted using Vampyroteuthis infernalis as an outgroup. The phylogeny from the partitioned data set is consistent with the current octopus taxonomy. The consensus of 9,000 phylogenetic trees from MrBayes showed high posterior probability values (&gt; 0.95) for most of the nodes. The first group (‘clade 1’) includes primarily cold water and deep-sea species from the families Bathypolypodidae, Eledonidae, Enteroctopodidae, Megaleledonidae. The second group (‘clade 2’) encompasses tropical-temperate and shallow water species from the family Octopodidae.
DOI: 10.5061/dryad.0m27218/2
title: BDD-2016-MJ (version épurée et corrigée)_Paracou Sapling Dynamics

description: Sapling census data from the Paracou Forest Disturbance Experiment, French Guiana. Data are from 64 circular regeneration census plots (per experimental plot; n = 12). Plots are arranged in an 8x8 fashion (columns and lines 3-10). See methods and/or metadata for further details.
DOI: 10.5061/dryad.15rs596/11
title: AT5G14750_WER_Ahal_Alyr_NGS_sanger_trimmed

description: WHEREWOLF gene (AT5G14750) homeolog specific PCR data from Shimizu-Inatsugi et al. (2009) Molecular Ecology
DOI: 10.5061/dryad.15rs596/12
title: AT5G13930_CHS_Ahal_Alyr_NGS_sanger_trimmed

description: Chalcone synthase (CHS) gene (AT5G13930) homeolog specific PCR from Shimizu-Inatsugi et al. (2009) Molecular Ecology
DOI: 10.5061/dryad.15rs596/13
title: Akam_SNP_validation_report21062017

description: Summary of SNP counts from homeolog specific PCR and NGS alignments included in this submission
DOI: 10.5061/dryad.173r3j7/1
title: Data set with all the references and variables used as factors in the meta-analyses.

description: (1) Experimental conditions, (2) Mycorrhizal treatment, (3) Ecosystem, (4) Performance measurement, including plant part (4a) and type of nutrient (4b) and (5) Mycorrhizal type. The species of the nurse and the facilitated plants are presented with the mean, sample size (N) and standard error (SE) of the performance measurement reported for the facilitated plant. Data for the control and treated treatments are presented in different columns. We considered “treated” the treatment in which the mycorrhizal fungi were expected to be reduced. NA stands for not available data.
DOI: 10.5061/dryad.46320g1/1
title: Fig_1A_deuterostome_ASIC_cDNA_sequences

description: These cDNAs were inserted into the pSP64 polyA vector before cRNA tanscription and expression in oocytes.
DOI: 10.5061/dryad.46320g1/2
title: Fig_3_Alignment_Vertebrate_ASIC4

description: MAFFT alignment used for ASIC4 phylogeny in Figure 3.
DOI: 10.5061/dryad.482m400/1
title: AlbiziaCoqui_Gases

description: N2O and NO gas data used in Hall, Huber, and Hughes (in press). Invasion of Hawaiian rainforests by an introduced amphibian predator and N2-fixing tree increases soil N2O emissions.  Ecosphere
DOI: 10.5061/dryad.503ds62/2
title: Rea_EVOLUTION OF NUTRIENT RESORPTION ACROSS THE HERBACEOUS GENUS HELIANTHUS_Massbased_leaf_data_20180806

description: Mass-based leaf data and climate and soil fertility data for 27 Helianthus species and 1 Phoebanthus species.
DOI: 10.5061/dryad.54q3f36/1
title: Supplemental Data 1 - Tables and Figures

description: Supplemental tables and figures to accompany "Phylogeny and evolutionary history of diplobathrid crinoids (Echinodermata)." Supplemental Table 1: Taxa coded; Supplemental Table 2: Characters and character states; Supplemental Table 3: Morphological characters shared among ≥75% of genera within major groups recovered; Supplemental Figure 1: Constraint tree used; Supplemental Figure 2: strict consensus tree recovered with Cleiocrinus included.
DOI: 10.5061/dryad.54q3f36/2
title: Supplemental Data 2 - Parsimony matrix

description: Suppmental Data 2: Diplobathrid character matrix and constraint for parsimony analysis.
DOI: 10.5061/dryad.54q3f36/3
title: Supplemental Data 3 - recovered trees, Cleiocrinus excluded

description: Supplemental Data 3: Trees recovered from parsimony analysis of Diplobathrids with Cleiocrinus excluded.
DOI: 10.5061/dryad.54q3f36/4
title: Supplemental Data 4 - Recovered trees, Cleiocrinus included

description: Supplemental Data 4: Trees recovered from parsimony analysis of Diplobathrids with Cleiocrinus included.
DOI: 10.5061/dryad.54q3f36/5
title: Supplemental Data 5 - Bayesian character matrix and commands

description: Supplemental Data 5: Diplobathrid character matrix and commands for Bayesian Analysis
DOI: 10.5061/dryad.5f88r9m/1
title: Martin et al MEE 2018 marmoset data

description: Data are provided for the six behavioral traits analyzed in the main paper, along with information on the subject, social group, series, and observation #. The names of these variables should be self-explanatory and facilitate efficient replication using the R code provided.
DOI: 10.5061/dryad.77v1s92/1
title: Field-2001-2005

description: field data on infection prevalence and asexual frequency from 2001-2005; from Vergara et al. 2014 Am Nat
DOI: 10.5061/dryad.77v1s92/2
title: Field-2012-2016

description: field data on infection prevalence and asexual frequency from 2012-2016
DOI: 10.5061/dryad.77v1s92/3
title: Field-2012-2016_withmales

description: field data on infection prevalence and asexual frequency from 2012-2016; modified for analyzing data with males
DOI: 10.5061/dryad.77v1s92/4
title: Bins_adults

description: data from experimental mesocosms; infection rate and asexual frequency in parent generation
DOI: 10.5061/dryad.77v1s92/5
title: Bins_adults_withmales

description: data from experimental mesocosms; infection rate and asexual frequency in parent generation; modified for analysis with males
DOI: 10.5061/dryad.77v1s92/6
title: Bins_babies

description: data from experimental mesocosms; asexual frequency in offspring generation
DOI: 10.5061/dryad.77v1s92/7
title: Bins_adults-babies

description: data from experimental mesocosms; parent and offspring data combined
DOI: 10.5061/dryad.7h4338m/1
title: Supplemental Table 1_will be uploaded in Dryad Digital R

description: Supplemental Table 1.  Relative abundances of the top (&gt;1 %) bacterial genera and phyla in fecal samples from offspring and dams.
DOI: 10.5061/dryad.7h4338m/2
title: Supplemental Table 2_will be uploaded in Dryad Digital R

description: Supplemental Table 2. Relative abundances of the top (&gt;1 %) bacterial genera and phyla in fecal samples from FMT recipients.
DOI: 10.5061/dryad.7h4338m/3
title: Supplemental Table 3_will be uploaded in Dryad Digital R

description: Supplemental Table 3. Relative abundances of the top (&gt;1 %) bacterial genera and phyla in FMT inoculates.
DOI: 10.5061/dryad.84033r7/1
title: 1 - Experiment_(a)_data

description: Experiment (a): data
DOI: 10.5061/dryad.84033r7/2
title: 2 - Experiment_(b)_frequency of egg-laying events

description: Experiment (b): frequency of egg-laying events
DOI: 10.5061/dryad.84033r7/3
title: 3 - Experiment_(b)_number of eggs laid per event

description: Experiment (b): number of eggs laid per event
DOI: 10.5061/dryad.84033r7/4
title: 4 - Experiment_(c)_digitalfilmaggressionallsep

description: Experiment (c): worker-to-queen aggression as a function of treatment
DOI: 10.5061/dryad.84033r7/5
title: 5 - Experiment_(c)_queenactivityrate

description: Experiment (c): queen activity rate
DOI: 10.5061/dryad.84033r7/6
title: 6 - Experiment_(c)_anytimeperiod

description: Experiment (c): worker-to-queen aggression as a function of worker reproductive status - any time period
DOI: 10.5061/dryad.84033r7/7
title: 7 - Experiment_(c)_eggmanipulationperiodonly

description: Experiment (c): worker-to-queen aggression as a function of worker reproductive status - egg manipulation period only
DOI: 10.5061/dryad.84033r7/8
title: 8 - Experiment_(c)_queeneggproduction

description: Experiment (c): queen egg production
DOI: 10.5061/dryad.860s8m3/1
title: Grendelmeier et al. 2018 - Ecol & Evol - Data

description: Data on which statistics and figures are based.
DOI: 10.5061/dryad.b4vg0.1/1.1
title: Adjacency matrix for the trophic layer

description: The file is TAB-delimited and contains 107 lines and 108 columns. The first line is composed by two TAB-keys followed by the numerical IDs of the 106 species. The 106 following lines are composed as follows. The first and second columns display the numerical ID and the name of the species respectively. The species name can include whitespace characters. The remaining columns are the adjancency matrix values, i.e. 1/0 for presence/absence of a link. A link between species i and j means species i is eaten by species j.
DOI: 10.5061/dryad.b4vg0.1/10.1
title: Figure S2 data
DOI: 10.5061/dryad.b4vg0.1/11.1
title: Figure S3 data
DOI: 10.5061/dryad.b4vg0.1/18.1
title: Figure S11 data

description: Distance matrix between interaction parameters estimated by the probabilistic modeling for the different clusters.
DOI: 10.5061/dryad.b4vg0.1/7.1
title: Figure 2 data

description: In/out degree for each species in the following order : trophic out, trophic In, positive out, positive in, negative out, negative in.
DOI: 10.5061/dryad.b4vg0.1/9.1
title: Figure 3 data
DOI: 10.5061/dryad.bn960cq/1
title: VisionData

description: This archive contains the data from all relevant variables for the four steps following a visual perturbation trigger (stimulus), and two steps preceding it (control) in MATLAB format (file results.mat). The file results.csv contains a sub-set of the data for statistical analysis. The matlab R-script used for the statistical analysis (visionStats.R) and the MATLAB script used to generate the published figures (createFigures.m) are also provided. The folders anovaResults and confintResults contain text files with the results of the statistical analysis.
DOI: 10.5061/dryad.bp25b65/3
title: Snail positions and phenotypes

description: Provides information about the sampling coordinates and phenotypes of each snail.
- x, y, z: Position of snail on the shore in 3 dimensions
- RW1, RW2: Relative warps of geometric morphometric analysis (shell shape)
- length_mm: Shell length (in mm)
- CS: Centroid size from geometric morphometric analysis
- DistAlongPath_m: Position on the path along the shore (in m)
DOI: 10.5061/dryad.bp25b65/4
title: Littorina saxatilis genome assembly

description: L. saxatilis genome assembly used in this study (repeat regions hard-masked).
DOI: 10.5061/dryad.d3kk74r/2
title: Specimens_information_Sagonas_et_al

description: A file contains the information for each specimens used in the present study. The different columns denote the collection/museum numbers (NHMC: Natural History Museum of Crete), class, family, species names and IDs, sampling regions and island names, country and accession numbers. The last two columns denotes whether sequencing was successful (i.e., 1) or not (i.e., 0) for neutral or adaptive markers (1/0). Furthermore, we report those specimens that were sequenced twice.
DOI: 10.5061/dryad.d3kk74r/3
title: Microsatellite_data_Sagonas_et_al

description: A file contains the microsatellite data where the Fst-values are based on. The first column entitled Sample-ID includes the abbreviation for specimens as given in File 1.
DOI: 10.5061/dryad.d3kk74r/4
title: Euclidean_geographical_distances_Sagonas_et_al

description: Contains the populations Euclidean geographical distance in km. Populations abbreviations as in File 1. Mantel test and Mantel correlogram were estimated based on this matrix
DOI: 10.5061/dryad.d3kk74r/5
title: MHC_class_I_STRUCTURE_Sagonas_et_al

description: Contains the major histocompatibility complex (MHC) data that the estimation of the pairwise Bray-Curtis similarity matrix was based on. The presence of an allele is indicated with 1
while the absence with 0. The table contains the exon 2 and exon 3 class I alleles in STRUCTURE format.
DOI: 10.5061/dryad.d3kk74r/6
title: MHC_class_I_alleles_exon2_Sagonas_et_al

description: Data containing the raw MHC sequences of exon 2 for Lacerta trilineata and Lacerta viridis
DOI: 10.5061/dryad.d3kk74r/7
title: MHC_class_I_alleles_exon3_Sagonas_et_al

description: Data containing the raw MHC sequences of exon 2 for Lacerta trilineata and Lacerta viridis
DOI: 10.5061/dryad.d9j09bm/1
title: supplemental file

description: R Code and vignette to perform simulations described in paper.
DOI: 10.5061/dryad.g7253h2/1
title: Riparian_birds_data.xml
DOI: 10.5061/dryad.j5dc4h1/1
title: Data logger summary

description: nest data lagger summary data
DOI: 10.5061/dryad.j5dc4h1/2
title: Predator presentation data

description: Predator presentation data
DOI: 10.5061/dryad.n23q7q1/1
title: De Cuyper et al_RawDataPredatorPreyRatios

description: Data spreadsheet including all raw literature data used for the scaling relationships predator size vs prey size, pack size, real observed kill frequency and gut capacity (see corresponding tabs). Legends are included to explain column headings (see corresponding tabs). Additionally, prey weights obtained from internet sources are provided in the spreadsheet.
DOI: 10.5061/dryad.nr7mb6f/1
title: Anemonefishes and host data

description: Colour pattern and ecological data for the anemonefishes, and morphological trait data for their anemone hosts
DOI: 10.5061/dryad.nr7mb6f/2
title: Pomacentrid stripe data

description: Body stripe data for the family Pomacentridae
DOI: 10.5061/dryad.p5n6g86/1
title: maternal_survival_data

description: Data from adult female lizards including CORT levels, mass, body size (SVL), and whether or not they survived
DOI: 10.5061/dryad.p5n6g86/2
title: hatch_success_data

description: Data from Sceloporus female clutches, including number of eggs laid and number that successfully hatched, with maternal mass, size, treatment, and CORT.
DOI: 10.5061/dryad.pt4hb40/3
title: MSP_ANY_Final

description: Pheromone quantification data for B. anynana
DOI: 10.5061/dryad.pt4hb40/4
title: Competition DATA

description: Competition experiment data for B.anynana and B. safitza
DOI: 10.5061/dryad.q49p6d8/1
title: database STAR network depot study

description: This dataset reports socio-demographic and clinical data from a cohort of 451 patients beginning a long-acting antipsychotic medication. Patients were recruited in 35 Italian Community Psychiatric Services between December 2015 and May 2017. All variables and codes are explained in a legend within the excel file, with the exception of some masked variables.
DOI: 10.17632/2hxj8x9vsm.1
title: Data for: The plant enhanced bio-cathode: Root exudates and microbial community for nitrogen removal

description: Analyses of sequencing data for bacterial communities. (a) Richness of bacterial communities in PBES, BES and P control; (b) relative abundances of major phylum-level bacterial groups estimated using the RDP classifier; (c) relative abundances of major genus-level bacterial groups estimated using the RDP classifier.
DOI: 10.17632/6yw2db7hdg.3
title: Data for: ENDOSCOPIC TRANSCANAL MYRINGOPLASTY : IS LEARNING CURVE A MYTH ?

description: Endoscopic transcanal Myringoplasty : Is Learning Curve a myth
DOI: 10.17632/bfpjy4gwrb.1
title: Data for: Raman and reflectance spectroscopy of serpentinites and related hydrated silicates: Effects of physical properties and observational parameters, and implications for detection and characterization on Mars

description: Raman and reflectance spectra of samples included in this paper
DOI: 10.17632/gxgcf7dprc.1
title: Data for: Comparison between cardiac risk scales in basic care for different populations.

description: Table 1: Concordance between the classification of men in cardiac risk scales ASCVD Risk and Framingham, southern Brazil.
DOI: 10.17632/jyvks95y34.1
title: Data for: Volatility estimation for Bitcoin: Replication and extension

description: The Bitcoin prices and returns
DOI: 10.17632/m9b9wjr6v5.1
title: Data for: General Gaussian Estimation

description: This is a classical data set for epileptic patients which has been used by many authors. We used longitudinal data approach in the analysis.
DOI: 10.5061/dryad.0qc39/1
title: females estimate

description: estimation of the total number of females from a single count using the expected proportion of females on land obtained with the RMM model
DOI: 10.5061/dryad.0qc39/2
title: Heat waves IC

description: heat waves on Cedros Island, 1957-1995
DOI: 10.5061/dryad.0qc39/3
title: maximum air temperature (month)

description: monthly average maximum air temperature on Cedros Island, 1957-1995
DOI: 10.5061/dryad.0qc39/4
title: mean air temperature (month)

description: monthly average mean air temperature on Cedros Island, 1957-1995
DOI: 10.5061/dryad.0qc39/5
title: minimum air temperature (month)

description: monthly average minimum air temperature on Cedros Island, 1957-1995
DOI: 10.5061/dryad.10454g0/1
title: Snort variation analysis data

description: Data related to the analysis of snort roughness (jitter and shimmer) and individual characteristics.
DOI: 10.5061/dryad.2th3266/1
title: Variants for all S. paradoxus strains listed  in Table 1 of the publication

description: This .vcf file includes only biallelic loci, with no missing data, after filters were applied as described in the publication.
DOI: 10.5061/dryad.2tk2040/1
title: pfdiv

description: This is a data file related to the paper entitled "Linking Darwin's naturalisation hypothesis and Elton’s diversity-invasibility hypothesis in experimental grassland communities"
DOI: 10.5061/dryad.320bv7b/1
title: Mental Health and Social Network Data

description: This dataset contains data used for the analyses included in "A social network analysis of psychological morbidity in an urban slum of Bangladesh" paper. The zip file contains both the data and also the codes that can replicate all the results reported in the main paper and the appendix.
DOI: 10.5061/dryad.3pf346v/1
title: Induction_all_data
DOI: 10.5061/dryad.3vv31qq/1
title: Raw data

description: This submission includes three files:1) WES vcf file for individual 12 of Family 1, 2)WES vcf file for Individual 5 of family 6, and 3) SNP chip data for all individuals shown in figure S2.
DOI: 10.5061/dryad.4006fm8/1
title: Landmark configurations

description: User-averaged landmark configurations for 3D scans of bird beaks. The two lists cover species for which genetic data is available (Gsubset) and also the full list of species (full_subset).
DOI: 10.5061/dryad.4006fm8/2
title: Table1 and table 2

description: Tree and trait data files used to calculate species-specific and clade rates of evolution, as well as data for candidate predictor variables (data used to obtain the results in tables 1 and 2).
DOI: 10.5061/dryad.46320g1/3
title: Fig_3_vertebrate_ASIC4_cDNA_sequences

description: cDNA sequences for novel ASIC4s from Figure 3. cDNAs were inserted into pSP64 polyA vector before cRNA transciprtion and expression in oocytes.
DOI: 10.5061/dryad.46320g1/4
title: Fig_4_ASIC4_ASIC1a_chimera_cDNA_sequences

description: cDNA sequences of chimeras tested in Figure 4. All cDNAs were inserted into pSP64 vector before cRNA transcription and expression in oocytes.
DOI: 10.5061/dryad.46320g1/5
title: Fig_S1_Alignment_Deuterostome_DEGENaC

description: MAFFT alignment of DEG ENaC sequences from various deuterostomes contributing to phylogeny in Fig S1A.
DOI: 10.5061/dryad.46320g1/6
title: Fig_S1A_Oikopleura_dioica_cDNA_sequences

description: cDNA sequences of DEG ENaC subunits from Oikopleura dioica, shown with asterisks in Figure S1A. cDNAs were inserted into pSP64 poly A vector before cRNA transcription and expression in oocytes.
DOI: 10.5061/dryad.482m400/2
title: CoquiAlbizia_Soils

description: Soils data used in Hall, Huber, and Hughes.  Invasion of Hawaiian rainforests by an introduced amphibian predator and N2-fixing tree increases soil N2O emissions.  Ecosphere, in press.
DOI: 10.5061/dryad.4gh6tk0/1
title: MEE-18-04-284_R1 Hawke et al Table S2

description: Stable isotope data in analytical sequence, showing the effect of incorrect chromatogram peak integration on reported results
DOI: 10.5061/dryad.6824131/1
title: Wolfe_et_al_2018_bioinformatics

description: Contains mapping files, OTU tables, bioinformatics processing script, and notes
DOI: 10.5061/dryad.6824131/2
title: Wolfe_et_al_2018_data_files

description: Contains data and community matrix files
DOI: 10.5061/dryad.6824131/3
title: rhytisma_R_script

description: R script for analyses and figures
DOI: 10.5061/dryad.6j90jp8/1
title: Pine siskin photoperiod data

description: Readme file and 4 data files that comprise the entire data set.