cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.gpkgww
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria clarkei Gamble"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152893-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yiukkf
title: Occurrence Download

description: A dataset containing 8330 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Reptilia",
 "TaxonKey is Amphibia"
 ]
 },
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-97.915649 36.350527,-97.915649 35.205233,-95.729370 35.205233,-95.729370 36.350527,-97.915649 36.350527))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8330 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005313-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qeyn0g
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epictia signata (Jan, 1861)"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011004-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.93ek6y
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria carsonii Baker f."
 ]
}

 The dataset includes 6 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152884-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.egl6ux
title: Occurrence Download

description: A dataset containing 3306 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pereskia Mill."
 ]
}

 The dataset includes 3306 records from 167 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005313-160509122628363/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rfgyke
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syngonium rayi Grayum"
 ]
}

 The dataset includes 47 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196544-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bgvvfh
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia sucrensis J.R.I.Wood"
 ]
}

 The dataset includes 19 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196545-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqknaq
title: Occurrence Download

description: A dataset containing 43346048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Year 1960-2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43346048 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004563-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbcqqh
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria chrysotricha Polhill"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152891-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lyhpg4
title: Occurrence Download

description: A dataset containing 606910 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Nicaragua"
 ]
}

 The dataset includes 606910 records from 493 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005313-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26rsqr
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria capuronii M.Peltier"
 ]
}

 The dataset includes 53 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152881-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c8qtuq
title: Occurrence Download

description: A dataset containing 43346048 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Year 1960-2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43346048 records from 319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004572-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju9t87
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Limonium aragonense (Debeaux) Font Quer"
 ]
}

 The dataset includes 69 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339262-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jzu822
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalaria claussenii Benth."
 ]
}

 The dataset includes 52 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152896-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.esatzu
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Puccinellia pungens (Pau) Paunero"
 ]
}

 The dataset includes 35 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339269-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dar5ew
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Malaysia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Papilio iswara White, 1842"
 ]
}

 The dataset includes 119 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0196546-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wrlev
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosthechea bulbosa (Vell.) W.E.Higgins"
 ]
}

 The dataset includes 196 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005314-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yym97m
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "Geometry POLYGON((95 20,125 20,125 35,95 35,95 20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Turdus feae (Salvadori, 1887)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152898-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqh66u
title: Occurrence Download

description: A dataset containing 473 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is China",
 "Country is Japan",
 "Country is Korea, Republic of",
 "Country is Chinese Taipei"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bletilla striata (Thunb.) Rchb.f."
 ]
}

 The dataset includes 473 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079509-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.0w3yrp
title: Occurrence Download

description: A dataset containing 143272890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Plantae"
 ]
}

 The dataset includes 143272890 records from 2767 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005314-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57841/casdc.0003489
title: 石墨烯等离激元在水溶液中的超灵敏中红外生物传感AFM表征
DOI: 10.15151/esrf-es-1584279039
title: Hydrogen in the Earth’s core: Sound velocities of hydrogen bearing Fe-Si-alloys at extreme conditions

description: In this experiment, we aim to investigate the density as well as the electronic, elastic and thermodynamic properties of hydrogen-bearing Fe-Si-alloys at pressures above 300 GPa and temperatures up to several thousands of degrees. Therefore, nuclear inelastic scattering (NIS) and powder x-ray diffraction (XRD) are planned to be used. Applying the NIS technique brings the advantage of studying the lattice dynamics in order to gain the thermodynamic sample characterization. The measured phonon density of states provides the Debye phonon average velocity (vD), which is necessary to calculate the compressional (vp) and shear velocity (vs) of the material, in combination with the density and bulk modulus obtained by XRD. The measurements and following calculations will allow us to refine the amount of hydrogen and silicon in the Earth’s core, to explain its observed seismic parameters.
DOI: 10.15468/dl.er9y4j
title: Occurrence Download

description: A dataset containing 515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-6509.0",
 "TaxonKey is Apodemus peninsulae (Thomas, 1907)"
 ]
}

 The dataset includes 515 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021388-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25402/pme.15186618.v1
title: pme-2020-0019 - Supplementary Material: Concentration and integrity indexes of urine cell-free DNA as promising biomarkers for early lung cancer diagnosis

description: Table 1. Primer and
 probe sequences of ALU fragments.<br>
 Table 2.<b> </b>Diagnostic
 information of ALU fragments in lung cancer patients. 
 
 Abstract: Aim: To
 explore the role of ucfDNA concentration and integrity indexes as potential
 biomarkers for lung cancer diagnosis.
 Methods: Quantitative
 real-time PCR targeting ALU repeats at three size fragments (ALU-60, 115 and
 247 bp) was performed in 55 lung cancer patients and 35 healthy individuals.
 Results: ucfDNA concentration
 and integrity indexes were significantly higher in lung cancer patients than
 in healthy controls. The area under the ROC curve (AUC) for differentiating
 patients with stage I/II from healthy controls by ALU fragments concentration
 were 0.856, 0.909 and 0.932, respectively. In addition, the ucfDNA integrity
 indexes in patients with lymph node metastasis were significantly higher than
 in patients with non-metastatic.
 
 




Conclusion: ucfDNA concentration and integrity
indexes could serve as promising biomarkers for lung cancer diagnosis.
DOI: 10.25402/pme.17391929.v1
title: Supplementary Material: Prioritizing pharmacogenomics implementation initiates - Survey of healthcare professionals

description: Supplemental material
– Survey Questions
DOI: 10.25402/pme.19122101
title: SupplementaryTable - Alignment of Health Plan Coverage Policies for Somatic Multigene Panel Testing with Clinical Guidelines in Select Solid Tumors

description: <b>Table 1</b>:
 Alignment to clinical guidelines for individual plans
 
 Alignment of Health
 Plan Coverage Policies for Somatic Multigene Panel Testing with Clinical
 Guidelines in Select Solid Tumors
DOI: 10.25402/pme.19195796
title: Supplemental file 1: Bilingual Glossary of Exome Sequencing Terms. Development and evaluation of an exome sequencing training course for medical interpreters.

description: Background: As
 genomic medicine reaches more diverse populations, there is an increased need
 for healthcare interpreters who understand and can effectively interpret
 genomics concepts.
 Methods: We designed
 a course for healthcare interpreters on exome sequencing to enhance their
 preparedness for genomic results disclosure appointments in the Cancer Health
 Assessments Reaching Many (CHARM) study and beyond. The course was evaluated
 via pre/post surveys and qualitative interviews. 
 Results: 23
 interpreters completed the course; 87% rated it as excellent/very good.
 Improved pre/post confidence interpreting for genetics appointments was
 statistically significant; pre/post knowledge was not. Interviews highlighted
 the need for more discussion time. 
 
 




Conclusion: While the course increased
confidence interpreting for exome sequencing results appointments, suggested
modifications could enhance knowledge and retention of key concepts.
DOI: 10.25402/pme.19195799
title: Supplemental file 2: Overall training evaluation. Development and evaluation of an exome sequencing training course for medical interpreters

description: Background: As
 genomic medicine reaches more diverse populations, there is an increased need
 for healthcare interpreters who understand and can effectively interpret
 genomics concepts. 
 Methods: We designed
 a course for healthcare interpreters on exome sequencing to enhance their
 preparedness for genomic results disclosure appointments in the Cancer Health
 Assessments Reaching Many (CHARM) study and beyond. The course was evaluated
 via pre/post surveys and qualitative interviews. 
 Results: 23
 interpreters completed the course; 87% rated it as excellent/very good.
 Improved pre/post confidence interpreting for genetics appointments was
 statistically significant; pre/post knowledge was not. Interviews highlighted
 the need for more discussion time. 
 
 




Conclusion: While the course increased
confidence interpreting for exome sequencing results appointments, suggested
modifications could enhance knowledge and retention of key concepts.
DOI: 10.25402/pme.19195799.v1
title: Supplemental file 2: Overall training evaluation. Development and evaluation of an exome sequencing training course for medical interpreters

description: Background: As
 genomic medicine reaches more diverse populations, there is an increased need
 for healthcare interpreters who understand and can effectively interpret
 genomics concepts. 
 Methods: We designed
 a course for healthcare interpreters on exome sequencing to enhance their
 preparedness for genomic results disclosure appointments in the Cancer Health
 Assessments Reaching Many (CHARM) study and beyond. The course was evaluated
 via pre/post surveys and qualitative interviews. 
 Results: 23
 interpreters completed the course; 87% rated it as excellent/very good.
 Improved pre/post confidence interpreting for genetics appointments was
 statistically significant; pre/post knowledge was not. Interviews highlighted
 the need for more discussion time. 
 
 




Conclusion: While the course increased
confidence interpreting for exome sequencing results appointments, suggested
modifications could enhance knowledge and retention of key concepts.
DOI: 10.25402/pme.19328837
title: Supplementary Table 2 - Investigating underlying human immunity genes, implicated diseases, and their relationship with the COVID-19

description: Supplementary Table
 2: Gene variant analysis.
DOI: 10.25402/pme.20301492.v1
title: Supplementary materials - Pharmacogenetic testing in pediatric neurology: a pragmatic study evaluating clinician and patient perceptions

description: Pharmacogenetic testing in pediatric
neurology: a pragmatic study evaluating
clinician and patient perceptions
DOI: 10.5281/zenodo.11203666
title: SHIP gut microbiome dataset for GP2 analysis

description: The Study of Health in Pomerania (SHIP) is a population-based study. SHIP consists of the two independent cohorts: SHIP-START and SHIP-TREND. The aim of the study is the investigation of common risk factors, subclinical disorders and manifest diseases in the population of Northeast Germany. Determination of gut microbiota profiles using 16S rRNA gene sequencing was performed as described before in detail [1]. In brief, DNA was extracted from fecal samples stored in a DNA-stabilizing EDTA-buffer using the PSP Spin Stool DNA Kit (Stratec Biomedical AG, Birkenfeld, Germany) following the manufacturer's instructions and isolates were stored at -20 °C degrees until sequencing of the V1/V2 region of the bacterial 16S rRNA gene using the 27F and the 338R primers on a MiSeq platform (Illumina, San Diego, USA).

[1] Frost, F., Kacprowski, T., Rühlemann, M., Bülow, R., Kühn, J.-P., Franke, A., Heinsen, F.-A., Pietzner, M., Nauck, M., Völker, U., Völzke, H., Aghdassi, A. A., Sendler, M., Mayerle, J., Weiss, F. U., Homuth, G., & Lerch, M. M. (2019). Impaired Exocrine Pancreatic Function Associates With Changes in Intestinal Microbiota Composition and Diversity. Gastroenterology, 156(4), 1010–1015. https://doi.org/10.1053/j.gastro.2018.10.047
DOI: 10.5281/zenodo.11203667
title: SHIP gut microbiome dataset for GP2 analysis

description: The Study of Health in Pomerania (SHIP) is a population-based study. SHIP consists of the two independent cohorts: SHIP-START and SHIP-TREND. The aim of the study is the investigation of common risk factors, subclinical disorders and manifest diseases in the population of Northeast Germany. Determination of gut microbiota profiles using 16S rRNA gene sequencing was performed as described before in detail [1]. In brief, DNA was extracted from fecal samples stored in a DNA-stabilizing EDTA-buffer using the PSP Spin Stool DNA Kit (Stratec Biomedical AG, Birkenfeld, Germany) following the manufacturer's instructions and isolates were stored at -20 °C degrees until sequencing of the V1/V2 region of the bacterial 16S rRNA gene using the 27F and the 338R primers on a MiSeq platform (Illumina, San Diego, USA).

[1] Frost, F., Kacprowski, T., Rühlemann, M., Bülow, R., Kühn, J.-P., Franke, A., Heinsen, F.-A., Pietzner, M., Nauck, M., Völker, U., Völzke, H., Aghdassi, A. A., Sendler, M., Mayerle, J., Weiss, F. U., Homuth, G., & Lerch, M. M. (2019). Impaired Exocrine Pancreatic Function Associates With Changes in Intestinal Microbiota Composition and Diversity. Gastroenterology, 156(4), 1010–1015. https://doi.org/10.1053/j.gastro.2018.10.047
DOI: 10.25402/fvl.15022776.v1
title: Potential drugs against COVID-19 revealed by Gene Expression Profile, Molecular Docking and Molecular Dynamic Simulation: Supplementary File.pptx

description: Binding
site predictions for each of the 27 drugs against SARS-CoV-2 3CL Main Protease
DOI: 10.25402/fvl.16999447.v1
title: Supplementary Table 6.xlsx: Temporal Variations of Country specific mutational profile of SARS-CoV-2: Effect on Vaccine Efficacy

description: <b>Supplementary Table 6</b>: The list of experimentally determined
 epitopes from which overlapped with one or more frequently mutated residues
 within the Spike protein. The mutations with corresponding countries where
 they were identified are listed. Highly mutated residues are highlighted.
DOI: 10.25402/fvl.19583347
title: Association between Human Herpesvirus-6 and Primary Brain Tumors: a systematic review and meta-analysis: Supplementary Data

description:             
Supplementary   Table 1. Search strategy
Supplementary   Table 2. Quality assessment of included studies.
<br>
<strong>Supplementary   figures </strong>
Supplementary   Figure 1: Funnel plots before (A) and after (B) applying the trim-and-fill   method. The open dots indicate the observed studies, and the closed dots   indicate the missing studies imputed by the trim-and-fill method.
Supplementary Figure 2. The pooled prevalence of   HHV-6 among primary brain cancer patients based on study type. Each dot in   figures indicates the prevalence along with the 95% CI associated with each   study
Supplementary   Figure 3. The pooled prevalence of HHV-6 among primary brain cancer patients   based on Detection method. Each dot in figures indicates the prevalence along   with the 95% CI associated with each study
PCR:   polymerase chain reaction, ELISA: enzyme-linked immunosorbent assay, NGS: next generation sequencing, ISH: in situ   hybridization, IHC: immunohistochemistry
Supplementary   Figure 4. The pooled prevalence of HHV-6 among primary brain cancer patients   based on sample type. Each dot in figures indicates the prevalence along with   the 95% CI associated with each study
FFPE:   Formalin-Fixed Paraffin-Embedded
Supplementary   Figure 5. The pooled prevalence of HHV-6 among primary brain cancer patients   based on geographical area. Each dot in figures indicates the prevalence   along with the 95% CI associated with each study
Supplementary   Figure 6. Overall Association between HHV-6 and primary brain cancer. Each   dot in figures indicates the prevalence along with the 95% CI associated with   each study
Supplementary   Figure 7. Association between HHV-6 and primary brain cancer based on   detection method. Each dot in figures indicates the prevalence along with the   95% CI associated with each study
PCR:   polymerase chain reaction, ISH: in situ hybridization, IHC:   immunohistochemistry
Supplementary   Figure 8. Association between HHV-6 and primary brain cancer based on sample   types. Each dot in figures indicates the prevalence along with the 95% CI   associated with each study
FFPE:   Formalin-Fixed Paraffin-Embedded
Supplementary   Figure 9. Association between HHV-6 and primary brain cancer based on   geographical areas. Each dot in figures indicates the prevalence along with   the 95% CI associated with each study