cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0h995cm
title: Bacterial Flowers--2022 Judges’ Award, Faculty/Project Scientist Participant Category. In Art of Science

description: Caption: When two very different strains of bacteria grow together, something miraculous happens Participant category: Faculty/Project Scientist Department: BioCircuits Institute at UC San Diego Diverse interactions among species within bacterial colonies lead to intricate spatiotemporal dynamics (ways they move through space and time), which can affect their growth and survival. These images show some of the complex structures that we discovered when we mixed together motile bacteria, Acinetobacter baylyi, and non-motile, Escherichia coli, and allowed them to grow on a soft agar surface for 24 hours or more starting from a little drop in the center of a Petri dish.
DOI: 10.6084/m9.figshare.21995948.v14
title: Dataset-GCB.xlsx

description: Abstract: Microbial necromass carbon (MNC) is an important contributor to stable soil organic carbon pools and is regulated by plant root traits and microbial community characteristics. Mean air temperature in the Tibetan Plateau (TP) is predicted to increase between 1.5 and 2.9°C by the end of 21st century, and how the accumulation and persistence of soil MNC will vary under different warming scenarios still poorly understood. We conducted an eight-year field warming experiment, simulating warming at 0 ℃, 0.4 ℃, 1.5 ℃, 2.0 ℃, and 2.5 ℃ above ambient temperatures in a high-altitude alpine meadow ecosystem. We found that low-level warming generally enhanced bacterial necromass carbon (BNC), fungal necromass carbon (FNC), and total MNC compare with high level warming in soil layers between 0-30 cm. Different warming treatments did not significantly affect the ratios of MNC or BNC to soil organic carbon (SOC) across depths. Structural equation modeling analysis demonstrated that the effect of plant root traits on MNC persistence strengthened with warming intensity, while the influence of microbial community characteristics waned as warming increased. Overall, our study provides novel evidence that the major determinants of MNC production and stabilization may vary with warming magnitude in alpine meadows. Differences in potential responses of microbial residue C to warming should be considered in global C-cycling models to more accurately predict future feedbacks between climate and soil C stocks.
DOI: 10.6075/j0hh6jvc
title: Seven Oaks Dam (SOD): Processed 2-minute data. In Center for Western Weather and Water Extremes (CW3E) Surface Meteorological Observational Dataset

description: CW3E SOD Surface Met Station is instrumented with Texas Electronics 9.6” TE525MM-L tipping bucket rain gauge; CS320 Digital Thermopile Pyranometer; 05108-L RM Young Wind Monitor HD Anemometer; CS106 Barometer; CS215-L CSL Temperature/RH Probe. The files available here for download are updated every 1-2 days with most recent data. CW3E is currently working on a partly automated, partly manual QC process to clean and improve all datasets as they are downloaded, which will make the data more accessible to interested scientists and stakeholders. This is an ongoing effort and is not yet implemented.
description: Processed 2-minute data from Seven Oaks Dam, a CW3E Surface Met Station. Each station measures temperature, relative humidity, pressure, and precipitation.
DOI: 10.6075/j0hh6k85
title: Tech Hands Meeting Working Group Proposal. In EarthCube Organization Materials

description: Proposal, approved by the Leadership Council February 17, 2015, initiating the Tech Hands Meeting Working Group under the Technology and Architecture Committee.
DOI: 10.6084/m9.figshare.22144847
title: Unbiased per capita CO2 emissions and ranking (2019)

description: This is the dataset for 2019 world biased/unbiased per capita CO2 emissions including ranking. The original data (country, code, population, CO2) was downloaded from the World Bank with date 12/22/2022 (we used the 2019 data because a lot of 2020 and 2021 data were missing at the point of download).
DOI: 10.6084/m9.figshare.22144847.v1
title: Unbiased per capita CO2 emissions and ranking (2019)

description: This is the dataset for 2019 world biased/unbiased per capita CO2 emissions including ranking. The original data (country, code, population, CO2) was downloaded from the World Bank with date 12/22/2022 (we used the 2019 data because a lot of 2020 and 2021 data were missing at the point of download).
DOI: 10.6075/j0j67h3p
title: Data from: Near-Inertial Surface Currents Around Islands

description: The model output can be used in conjunction with code available in the following GitHub repository: https://github.com/msiegelm/NICurrentsAroundIslands
description: This collection contains numerical model output from a linear 1.5-layer reduced gravity model. These simulations are presented in Siegelman et al. (2022), which examines the behavior of near-inertial surface currents around circular islands. The model output can be used in conjunction with code available in the following GitHub repository: https://github.com/msiegelm/NICurrentsAroundIslands
DOI: 10.5281/zenodo.7676731
title: Table 2. Results of organoleptic observation's ointment subfraction 10% Meniran leaves

description: Table 2. Results of organoleptic observations ointment subfraction 10% Meniran leaves
DOI: 10.5281/zenodo.7676730
title: Table 2. Results of organoleptic observation's ointment subfraction 10% Meniran leaves

description: Table 2. Results of organoleptic observations ointment subfraction 10% Meniran leaves
DOI: 10.6075/j0j96642
title: Water Tanks. In Data from: Building Cultural Heritage Resilience through Remote Sensing: An Integrated Approach using Multi-temporal Site Monitoring, Datafication, and Web-GL Visualization

description: Dataset includes all the natively digital geospatial and 3D data collected in our topographic and 3D survey of the water tanks located on top of the Bodie Bluff in an area closed to visitors.
description: The IBM 3D models and derivative products were generated via a typical Image-based modeling pipeline. The aerial photos were collected by contractor Monarch Inc. using a custom-made multi-rotor drone. The geospatial control data was collected by California State Parks licensed surveyor David Gutierrez using a Trimble differential GPS and Trimble robotic total station.
DOI: 10.6075/j0jh3mbn
title: Sustainability models for integrated digital Earth Science. In EarthCube Organization Materials

description: The NSF Earthcube program sponsored a study of Earth Science infrastructure project sustainability. This report documents that study and its results. Eleven data infrastructure projects, most focused solely on the Earth Sciences, were studied by conducting interviews with a person who was or is currently a leader in the project. The study reveals that, even though the projects studied varied significantly in many ways, sustainable projects share common traits, approaches, and challenges.
DOI: 10.6075/j0jm285x
title: Maui Nui 2019-05 (Expedition) - Kaho'olawe (Island) - Raw Images. In 100 Island Challenge Collection

description: In May of 2019, the 100 Island Challenge team visited Kaho'olawe to collect large-area imagery as part of the Maui Nui 2019-05 expedition. The imagery collected here are resurveys of permanent sites established during the Maui Nui 2017-04 expedition. For each site, a preview image and the raw digital images used to create composite large-area image products of the underwater sites have been made available. A general description of the methods used to acquire the images can be found in a README.txt file contained within each component. Site specific metadata can be found within a METADATA.txt file contained within each component.
DOI: 10.5281/zenodo.7676708
title: Observation of room temperature excitons in an atomically thin topological insulator

description: Here you can find some data and information concerning the theoretical side of the paper "Observation of room temperature excitons in an atomically thin topological insulator", published in Nature Communications. While some initial results have been obtained using the DFT package VASP, the main core of the work (GW + BSE) is based on the packages Quantum Espresso and YAMBO. The data that you find will then have an according format.
DOI: 10.5281/zenodo.7676707
title: Observation of room temperature excitons in an atomically thin topological insulator

description: Here you can find some data and information concerning the theoretical side of the paper "Observation of room temperature excitons in an atomically thin topological insulator", published in Nature Communications. While some initial results have been obtained using the DFT package VASP, the main core of the work (GW + BSE) is based on the packages Quantum Espresso and YAMBO. The data that you find will then have an according format.
DOI: 10.6075/j0k074g9
title: Data from: Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits. In Abraham A. Palmer Lab Research Data Collection

description: The data in this object comes from the publication titled “Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits”, authored by Chitre et al. The majority of the object is dedicated to the phenotypic and genetic data presented throughout the publication. However, this object also contains additional information beyond what is presented, including (1) a genetic relatedness matrix, (2) Summary files for the GWAS results for all phenotypes, (3) Trait descriptions. Details on how these files were generated can all be found in the Methods section of the associated publication.
description: All software versions used to generate the data in this collection are noted below, in the Methods section of the associated publication and the Github repository (https://github.com/ApurvaChitre/GWAS_ExploratoryLocomotion_F2) -- GWAS: gcta v1.93.2 beta -- Processing genotype data : PLINK v1.90 The compressed VCF files can be handled using bcftools (https://samtools.github.io/bcftools/bcftools.html) and vcftools (https://vcftools.github.io/index.html).
DOI: 10.6075/j0k074g9j0k074g9
title: Data from: Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits. In Abraham A. Palmer Lab Research Data Collection

description: The data in this object comes from the publication titled “Genome-Wide Association Study in a Rat Model of Temperament Identifies Multiple Loci for Exploratory Locomotion and Anxiety-Like Traits”, authored by Chitre et al. The majority of the object is dedicated to the phenotypic and genetic data presented throughout the publication. However, this object also contains additional information beyond what is presented, including (1) a genetic relatedness matrix, (2) Summary files for the GWAS results for all phenotypes, (3) Trait descriptions. Details on how these files were generated can all be found in the Methods section of the associated publication.
description: The compressed VCF files can be handled using bcftools (https://samtools.github.io/bcftools/bcftools.html) and vcftools (https://vcftools.github.io/index.html).
DOI: 10.6075/j0k35ttb
title: Radioactive Lungs--2022 Judges’ Award, Postdoctoral Category. In Art of Science

description: Caption: A unique method to track the movement of gas through the body provides insights to detect and treat diseases Participant category: Postdoctoral Department: Emergency Medicine at UC San Diego This image shows radioactive nitrogen gas being inhaled into the lungs of a rat. Radioactive nitrogen releases atomic particles as it moves through the body, providing a signal that allows us to track where the nitrogen gas is. Here, the signal is strongest in the trachea, then spreads out as the nitrogen fills the lungs before it is taken up by the blood and transported throughout the body. As only the gas is being tracked, no anatomical structures are seen as in traditional medical scans, producing a silhouette of the lungs. Currently we are tracking the movement of nitrogen to better understand injuries during SCUBA diving where pressure changes can cause nitrogen gas to form bubbles in bodily tissues, a condition known as decompression sickness or “the bends.” Ethical animal models are essential to understanding and developing treatments for such illnesses, as well as providing a foundation for future research in humans. All procedures were performed in accordance with protocols approved by the Institutional Animal Care and Use Committee of the University of California San Diego.
DOI: 10.5281/zenodo.7676635
title: PXD036868

description: Hands-on training with Galaxy proteomics resources.
DOI: 10.5281/zenodo.7676636
title: PXD036868

description: Hands-on training with Galaxy proteomics resources.
DOI: 10.5281/zenodo.7676687
title: PXD036868

description: Hands-on training with Galaxy proteomics resources.
DOI: 10.5281/zenodo.7676729
title: PXD036868

description: Hands-on training with Galaxy proteomics resources.
DOI: 10.5281/zenodo.7676760
title: PXD036868

description: Hands-on training with Galaxy proteomics resources.
DOI: 10.6084/m9.figshare.21995948
title: Dataset-Personal.xlsx

description: Abstract: <br>
DOI: 10.6084/m9.figshare.21995948.v16
title: Dataset-Personal.xlsx

description: Abstract: <br>
DOI: 10.6084/m9.figshare.21995948.v15
title: Dataset-GCB.xlsx

description: Abstract: Microbial necromass carbon (MNC) is an important contributor to stable soil organic carbon pools and is regulated by plant root traits and microbial community characteristics. Mean air temperature in the Tibetan Plateau (TP) is predicted to increase between 1.5 and 2.9°C by the end of 21st century, and how the accumulation and persistence of soil MNC will vary under different warming scenarios still poorly understood. We conducted an eight-year field warming experiment, simulating warming at 0 ℃, 0.4 ℃, 1.5 ℃, 2.0 ℃, and 2.5 ℃ above ambient temperatures in a high-altitude alpine meadow ecosystem. We found that low-level warming generally enhanced bacterial necromass carbon (BNC), fungal necromass carbon (FNC), and total MNC compare with high level warming in soil layers between 0-30 cm. Different warming treatments did not significantly affect the ratios of MNC or BNC to soil organic carbon (SOC) across depths. Structural equation modeling analysis demonstrated that the effect of plant root traits on MNC persistence strengthened with warming intensity, while the influence of microbial community characteristics waned as warming increased. Overall, our study provides novel evidence that the major determinants of MNC production and stabilization may vary with warming magnitude in alpine meadows. Differences in potential responses of microbial residue C to warming should be considered in global C-cycling models to more accurately predict future feedbacks between climate and soil C stocks.
DOI: 10.6075/j0kk9bzp
title: Data from: Using a Lagrangian particle tracking model to evaluate impacts of El Niño-related advection on euphausiids in the southern California Current System

description: These supplemental animations depict particle backtrack pathways from the sampled spring distributions of six euphausiid species in the southern California Current System to the prior winter origins of water masses that effect each species. The goal of our study was to explore the sole influence of horizontal advection in describing interannual variability in each euphausiid species. The particle backtracks explicitly model the water masses that affect each species in spring; mismatches between variability in those water masses and variability in biomass of a species suggest the species underwent additional in situ biological changes. We used modeled flow field outputs from the California State Estimate, a regionally optimized downscale of the MITgcm, to force a particle backtracking model. The model encompasses 2008-2017. The euphausiid biomass samples come from the CalCOFI program. We first objectively mapped the biomass values from the individual stations for a single spring onto a smooth, interpolated surface to depict the distribution across the entire region. From that surface, we identified the threshold contours encompassing the regions of &gt;80% biomass and 50-80% biomass. We then seeded particles within those contours to represent that spring distribution, and then backtracked the particles for four months to the prior December.
DOI: 10.6075/j0m045mp
title: Rarotonga 2019-11 (Expedition) - Rarotonga (Island) - Raw Images. In 100 Island Challenge Collection

description: In November of 2019, the 100 Island Challenge team visited Rarotonga to collect large area imagery as part of the Rarotonga 2019-11 expedition. The imagery collected here are resurveys of permanent sites established during the Rarotonga 2018-01 expedition. For each site, a preview image and the raw digital images used to create composite large-area image products of the underwater sites have been made available. A general description of the methods used to acquire the images can be found in a README.txt file contained within each component. Site specific metadata can be found within a METADATA.txt file contained within each component.
DOI: 10.6075/j0m045n4
title: Society Islands 2021-05 (Expedition) - Tetiaroa (Island) - Raw Images. In 100 Island Challenge Collection

description: In May of 2021, the 100 Island Challenge team visited Tetiaroa to collect large area imagery as part of the Society Islands 2021-05 expedition. The imagery collected here established permanent sites that can later be resurveyed as part of the 100 Island Challenge Project. For each site, a preview image and the raw digital images used to create composite large-area image products of the underwater sites have been made available. A general description of the methods used to acquire the images can be found in a README.txt file for each site. Site specific metadata can be found within a METADATA.txt file for each site.
DOI: 10.6075/j0m32vx8
title: Perovskite Crystals with a Gradient Composition--2022 Honorable mention. In Art of Science

description: Caption: Perovskite crystals with outstanding electron transport properties for next generation solar cells Participant category: Faculty/Project Scientist Departments: Nanoengineering, Bioengineering, and Electrical and Computer Engineering Due to their remarkable charged carrier dynamics, hybrid halide perovskites (HHPs) have tremendous potential for the next-generation electronic and optoelectronic devices. My group demonstrated chemical epitaxial growth of single crystal HHP thin films for the first time. We have also been able to create an unprecedented compositional gradient by continuously tuning the growth precursor composition. This compositional gradient generates a bandgap gradient along the thickness direction, which is necessary for efficient sunlight absorption and facilitates the dissociation and collection of carriers.
DOI: 10.6075/j0m908w3
title: Dataset of Simulated Intracardiac Transmembrane Voltage Recordings and ECG Signals. In Lawrence Livermore National Laboratory (LLNL) Open Data Initiative

description: The dataset consists of pairs of computationally simulated intracardiac transmembrane voltage recordings and ECG signals. In total, 16140 organ-level simulations were conducted to create this dataset, using a range of cardiac geometries and physiological parameters. Simulations were performed at LLNL's Lassen supercomputer, concurrently utilizing 4 GPUs and 40 CPU cores. Each simulation produced pairs of 500ms-by-10 ECG signals and 500ms-by-75 transmembrane voltage signals. For convenience, the signals are concatenated and saved as matrices. Each of these matrices is then stored as a numpy array. See the documentation for further details.
DOI: 10.6075/j0mc8xwp
title: CIL:50665, Postnatal day 4 mouse inner ear outer hair cell stereocilia bundle labeled with anti-PKHD1L1 antibody (10 nm gold beads). In Cell Image Library

description: Postnatal day 4 mouse inner ear outer hair cell stereocilia bundle labeled with anti-PKHD1L1 antibody (10 nm gold beads). Also included is the apical end of the hair cell.
description: Item type: recorded image Imaging mode: Serial electron microscopy; FIB-SEM Visualization methods: Heavy metal stain (osmium tetroxide, potassium ferrocyanide, tannic acid), immunogold labeling using 10 nm gold beads
description: Images were acquired with FEI Helios FIB-SEM, using backscatter detector from an epoxy resin embedded inner ear Organ of Corti sample. The serial EM data was collected at 15 nm milling step, and pixel resolution in the range of 1.95-2.75 nm/pixel.
DOI: 10.6084/m9.figshare.22178345
title: Bae2023-AmbiguousRC1-English_native_data.xlsx

description: This study is about ambiguous relative clause attachment.
DOI: 10.6084/m9.figshare.22178345.v1
title: Bae2023-AmbiguousRC1-English_native_data.xlsx

description: This study is about ambiguous relative clause attachment.
DOI: 10.6084/m9.figshare.22178348
title: Bae2023-AmbiguousRC1-Trilingual_speaker_data.xlsx

description: This study is about trilingual speakers' ambiguous relative clause attachment
DOI: 10.6084/m9.figshare.22178348.v1
title: Bae2023-AmbiguousRC1-Trilingual_speaker_data.xlsx

description: This study is about trilingual speakers' ambiguous relative clause attachment
DOI: 10.6084/m9.figshare.22178363
title: S1 Importance values of climatic predictors.docx

description: <strong>Niche and range shifts of the fall webworm (</strong><em><strong>Hyphantria cunea</strong></em><strong> Dury) in Europe imply its huge invasion potential in future</strong>
DOI: 10.6084/m9.figshare.22178363.v1
title: S1 Importance values of climatic predictors.docx

description: <strong>Niche and range shifts of the fall webworm (</strong><em><strong>Hyphantria cunea</strong></em><strong> Dury) in Europe imply its huge invasion potential in future</strong>
DOI: 10.6075/j0n016p5
title: Okinawa 2019-07 (Expedition) - Okinawa (Island) - Raw Images. In 100 Island Challenge Collection

description: In July of 2019, the 100 Island Challenge team visited Okinawa to collect large area imagery as part of the Okinawa 2019-07 expedition. The imagery collected here established permanent sites that can later be resurveyed as part of the 100 Island Challenge Project. For each site, a preview image and the raw digital images used to create composite large-area image products of the underwater sites have been made available. A general description of the methods used to acquire the images can be found in a README.txt file for each site. Site specific metadata can be found within a METADATA.txt file for each site.
DOI: 10.6075/j0n29x4d
title: A Non-Quiescent Ocean--2022 Honorable mention. In Art of Science

description: Caption: Beneath the surface, water movement in the ocean is more complex and variable than one may imagine Participant category: Graduate student Department: Scripps Institution of Oceanography Depicted is how the movement of water across a shipping line between Japan and Hawaii in the North Pacific Ocean changes over time. Red represents water flowing northward and blue represents water flowing southward. The darker the color, the more water that is crossing the shipping line. The time period shown spans from 2004 to 2019.
DOI: 10.6084/m9.figshare.22178372
title: Bae2023-AmbiguousRC1-Test_items

description: Items used for the study (L3 ambiguous relative clause attachment)
DOI: 10.6084/m9.figshare.22178372.v1
title: Bae2023-AmbiguousRC1-Test_items

description: Items used for the study (L3 ambiguous relative clause attachment)