cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7808390
title: Metadata for various molecular traits included in the eQTL Catalogue

description: Metadata for various molecular traits included in the eQTL Catalogue. Metadata files for the Leafcutter datasets can be found here. The tab-separated files contain the following columns: <strong>phenotype_id</strong> - ID of the molecular trait that has been quantified. This can be either the gene ID (RNA-eq eQTLs), probe ID (microarray eQTLs), transcript ID (full-length transcript usage QTLs), splice junction ID (Leafcutter), exon id (exon-level QTLs) or any other molecular trait that has been quantified. <strong>quant_id</strong> - Used to quantify relative transcript usage or relative transcriptional event usage (in txrevise). <strong>group_id</strong> - Used for transcript usage and splicing phenotypes. Overlapping phenotypes whose relative expression is quantified belong to the same group (e.g. alternative spliced exons form clusters in Leafcutter). QTLTools permutation p-values are calculated accross all phenotypes within a group and only the phenotype with the smallest permutation p-value is reported. <strong>gene_id</strong> - Ensembl gene id <strong>chromosome</strong> - Chromosome of the gene <strong>gene_start</strong> - End coordinate of the gene (GRCh38) <strong>gene_end</strong> - Start coordinate of the gene (GRCh38) <strong>strand</strong> - Strand of the gene <strong>gene_name</strong> - Gene name extracted from Ensembl biomart. <strong>gene_type</strong> - Gene type extracted from Ensembl biomart. <strong>gene_gc_content</strong> - Percentage GC content of the gene. Extracted from Ensembl biomart and used as a covariate in cqn normalisation. Calculated with bedtools nuc for exons. <strong>gene_version</strong> - Ensembl gene version <strong>phenotype_pos</strong> - Genomic position used to determine the centre point of the <em>cis-</em>window for QTL mapping. By default this is the beginning of the gene (either gene start or gene end, depending on the strand of the gene). <strong>phenotype_length</strong> - (optional) - Length of the gene or exon in basepairs. Required to properly normalise featureCounts quantification results with cqn.
description: April 2023 - Added metadata for SomaLogic aptamers.
DOI: 10.5281/zenodo.3366010
title: Metadata for various molecular traits included in the eQTL Catalogue

description: Metadata for various molecular traits included in the eQTL Catalogue. Metadata files for the Leafcutter datasets can be found here. The tab-separated files contain the following columns: <strong>phenotype_id</strong> - ID of the molecular trait that has been quantified. This can be either the gene ID (RNA-eq eQTLs), probe ID (microarray eQTLs), transcript ID (full-length transcript usage QTLs), splice junction ID (Leafcutter), exon id (exon-level QTLs) or any other molecular trait that has been quantified. <strong>quant_id</strong> - Used to quantify relative transcript usage or relative transcriptional event usage (in txrevise). <strong>group_id</strong> - Used for transcript usage and splicing phenotypes. Overlapping phenotypes whose relative expression is quantified belong to the same group (e.g. alternative spliced exons form clusters in Leafcutter). QTLTools permutation p-values are calculated accross all phenotypes within a group and only the phenotype with the smallest permutation p-value is reported. <strong>gene_id</strong> - Ensembl gene id <strong>chromosome</strong> - Chromosome of the gene <strong>gene_start</strong> - End coordinate of the gene (GRCh38) <strong>gene_end</strong> - Start coordinate of the gene (GRCh38) <strong>strand</strong> - Strand of the gene <strong>gene_name</strong> - Gene name extracted from Ensembl biomart. <strong>gene_type</strong> - Gene type extracted from Ensembl biomart. <strong>gene_gc_content</strong> - Percentage GC content of the gene. Extracted from Ensembl biomart and used as a covariate in cqn normalisation. Calculated with bedtools nuc for exons. <strong>gene_version</strong> - Ensembl gene version <strong>phenotype_pos</strong> - Genomic position used to determine the centre point of the <em>cis-</em>window for QTL mapping. By default this is the beginning of the gene (either gene start or gene end, depending on the strand of the gene). <strong>phenotype_length</strong> - (optional) - Length of the gene or exon in basepairs. Required to properly normalise featureCounts quantification results with cqn.
description: April 2023 - Added metadata for SomaLogic aptamers.
DOI: 10.6073/pasta/367c1183caa614dc1740518ddcf4fd3b
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 30-minute summary data: 2013 - ongoing

description: 30-minute summary data at NPP M-NORT met station. Average air temperature and relative humidity are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP G-SUMM site. Air temperature and relative humidity are measured at approximate 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/01ad83b4e12b4d74a63fdd6715436923
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: Daily summary data: 2013 - ongoing

description: Daily summary data at NPP M-NORT met station. Average/maximum/minimum air temperature; average/maximum relative humidity. These are measured and calculated based on 1-second scan rate of all sensors located at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Air temperature and relative humidity are measured at approximately 2.5m. This climate station is operated by the Jornada LTER Program. This is an ONGOING dataset.
DOI: 10.6073/pasta/977b6a64b548947ca7576c392b2313e5
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 1-second summary precipitation data: 2013 - ongoing

description: 1-second summary precipitation data at NPP M-NORT met station. Total precipitation per second is recorded only if there is measurable precipitation. This is recorded at an automated meteorological station installed at Jornada LTER NPP M-NORT site.. This climate station is operated by the Jornada LTER Program. IMPORTANT: Rainfall is only recorded when a bucket tip occurs on the tipping bucket rain gauge. If there is missing data due to equipment or other problems, there will be no indication of this within this dataset. The user needs to review precipitation values in the 30 minute or hourly summary datasets to determine if there are missing data in this 1 second detailed precipitation dataset. Reference the package i.d.'s knb-lter-jrn.210437022, knb-lter-jrn.210437037, and knb-lter-jrn.210437052 for the NPP M-NORT met station 30 minute, hourly, and daily summary datasets, respectively. This is an ONGOING dataset.
DOI: 10.6073/pasta/f77e888f3d685c7661c4c219799fb313
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: 30-minute soil volumetric water content data: 2013 - ongoing

description: 30-minute Soil Moisture data at NPP M-NORT met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured every 30 minutes at an automated meteorological station installed at Jornada LTER NPP M-NORT site. Measurements are made every 30 minutes at 10 cm, 20 cm, and 30 cm soil depths. This is an ONGOING dataset.
DOI: 10.6073/pasta/bf4862108a1b0adab59e1a605e92d370
title: Jornada Basin LTER: Wireless meteorological station at NPP M-NORT site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP M-NORT met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP M-NORT site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.34740/kaggle/dsv/5835287
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.20712592
title: Transcriptome analysis of testes gene expression to explore genetic diversity of Mangalica and Camborough boars

description: The testis, an important reproductive organ, is involved in spermatogenesis and steroid hormone secretion and has been the subject of a wide variety of studies. Pigs are often used as model animals for studies on human physiology and disease, and studies on the testicular development of pigs could shed light on human reproduction. Mangalica, an indigenous Hungarian pig breed, has reproductive traits that are different from those of commercial pig breeds. This specificity could reveal important differences in the cascades and reproductive genes between humans and other animals. In this study, we conducted RNA-sequencing analysis of the testes of 14 days old Mangalica and Camborough boars. We also performed clustering and pathway analysis of differentially expressed genes. We observed the differences in gene expression between the breeds, including Wnt signalling pathways involved in early testicular development. These datasets and analyses are expected to provide important gene sets for pig testis development that can be applied in future studies on human reproductive mechanisms.
DOI: 10.5281/zenodo.8050633
title: Outcome analysis of Posterior Cruciate Ligament injuries

description: <strong>Background - </strong>The posterior cruciate ligament (PCL), a major stabiliser of the knee, restrains the posterior translation of tibia over femur. Injury to the two bundles of this ligament is usually seen in a motor vehicle accident, followed by dashboard injury. <strong>Methods - </strong>Non-operative management post posterior cruciate ligament tears includes non-steroidal anti-inflammatory drugs and rehabilitation. Common surgical procedures include trans-tibial tunnel or tibial inlay technique of graft reconstruction, single bundle or double bundle reconstruction. Literature on outcomes of posterior cruciate ligament injuries managed with either of the methods is sparse; we therefore aim to conduct an interventional study to analyse the patients’ functional status and satisfaction post treatment. <strong>Conclusions -</strong> Lysholm knee scoring scale and IKDC knee scoring system will be used as outcome measures. The follow up scores are taken six, 12, 15 and 24 months after the treatment.
DOI: 10.5281/zenodo.8050632
title: Outcome analysis of Posterior Cruciate Ligament injuries

description: <strong>Background - </strong>The posterior cruciate ligament (PCL), a major stabiliser of the knee, restrains the posterior translation of tibia over femur. Injury to the two bundles of this ligament is usually seen in a motor vehicle accident, followed by dashboard injury. <strong>Methods - </strong>Non-operative management post posterior cruciate ligament tears includes non-steroidal anti-inflammatory drugs and rehabilitation. Common surgical procedures include trans-tibial tunnel or tibial inlay technique of graft reconstruction, single bundle or double bundle reconstruction. Literature on outcomes of posterior cruciate ligament injuries managed with either of the methods is sparse; we therefore aim to conduct an interventional study to analyse the patients’ functional status and satisfaction post treatment. <strong>Conclusions -</strong> Lysholm knee scoring scale and IKDC knee scoring system will be used as outcome measures. The follow up scores are taken six, 12, 15 and 24 months after the treatment.
DOI: 10.6084/m9.figshare.19160663.v7
title: Bullying10k

description: a dataset about bullying
DOI: 10.34740/kaggle/dsv/5955175
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.22664902
title: Conformational dynamics of cohesin/Scc2 loading complex are regulated by Smc3 acetylation and ATP binding

description: The western blot raw data and analysis; modelled protein structures; ATPase analysis data
DOI: 10.6084/m9.figshare.22664902.v2
title: Conformational dynamics of cohesin/Scc2 loading complex are regulated by Smc3 acetylation and ATP binding

description: The western blot raw data and analysis; modelled protein structures; ATPase analysis data
DOI: 10.6084/m9.figshare.22664902.v1
title: Conformational dynamics of cohesin/Scc2 loading complex are regulated by Smc3 acetylation and ATP binding

description: The western blot raw data and analysis; modelled protein structures; ATPase analysis data
DOI: 10.5281/zenodo.8050686
title: carduelis_carduelis_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8050685
title: carduelis_carduelis_zanfona_1.fasta.gz

description: .
DOI: 10.15468/dl.fw684c
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saccharum longesetosum (Andersson) V.Naray. ex Bor"
 ]
}

 The dataset includes 115 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101691-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzzxft
title: Occurrence Download

description: A dataset containing 25720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix retusa L."
 ]
}

 The dataset includes 25720 records from 241 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101689-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qrkvy
title: Occurrence Download

description: A dataset containing 1000 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus spurrelli Boulenger, 1914"
 ]
}

 The dataset includes 1000 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101692-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5j7x2
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saurauia rubrisquamata A.C.Sm."
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101693-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6qpxk
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saccharum maximum (Brongn.) Trin."
 ]
}

 The dataset includes 72 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101695-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nt237b
title: Occurrence Download

description: A dataset containing 2736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saxifraga vayredana Luizet"
 ]
}

 The dataset includes 2736 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101694-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25546666
title: Viscoelastic_fracture_data.zip from The linear viscoelastic fracture theory applies to soft solids better when they are…viscoelastic

description: Over the last half-century, linear viscoelastic models for crack growth in soft solids have flourished but their predictions have rarely been compared to experiments. In fact, most available models are either very approximate or cast in forms which are not quite suitable for the analysis of actual data. Here, we propose a linear viscoelastic approach which consistently exploits the dynamic mechanical analysis data. We apply this method to four sets of results documenting fracture or adhesion rupture in soft solids with various degrees of viscoelasticity. For elastomers, the results reproduce the well-known inconsistency of the process zone size. In more viscoelastic systems however, the present approach is able to match the measured velocity dependence of the rupture energy with physically acceptable process zone sizes. Moreover, our predictions agree with the damage zone sizes measured by mecanoluminescence. Building on these results, we discuss various issues arising when evaluating the linear viscoelastic contribution to the rupture/adhesion energy in soft solids: data quality, physical interpretation of the parameters, validity of simpler approximations and limitations of the present approach.
DOI: 10.6084/m9.figshare.25546666.v1
title: Viscoelastic_fracture_data.zip from The linear viscoelastic fracture theory applies to soft solids better when they are…viscoelastic

description: Over the last half-century, linear viscoelastic models for crack growth in soft solids have flourished but their predictions have rarely been compared to experiments. In fact, most available models are either very approximate or cast in forms which are not quite suitable for the analysis of actual data. Here, we propose a linear viscoelastic approach which consistently exploits the dynamic mechanical analysis data. We apply this method to four sets of results documenting fracture or adhesion rupture in soft solids with various degrees of viscoelasticity. For elastomers, the results reproduce the well-known inconsistency of the process zone size. In more viscoelastic systems however, the present approach is able to match the measured velocity dependence of the rupture energy with physically acceptable process zone sizes. Moreover, our predictions agree with the damage zone sizes measured by mecanoluminescence. Building on these results, we discuss various issues arising when evaluating the linear viscoelastic contribution to the rupture/adhesion energy in soft solids: data quality, physical interpretation of the parameters, validity of simpler approximations and limitations of the present approach.
DOI: 10.15468/dl.qazx6w
title: Occurrence Download

description: A dataset containing 1706 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix rhamnifolia Pall."
 ]
}

 The dataset includes 1706 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101696-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddrdmv
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saurauia rufa Burkill"
 ]
}

 The dataset includes 13 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101697-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/9b0a-ng53
title: Parkes observations for project P1172 semester 2023OCTS_12

description: PSR J1713+0747 is a very important millisecond pulsar for global pulsar timing array campaigns, due to its long-term observation history, very stable and narrow profile and strong S/N. In April 2021, the pulsar experienced a significant event related to a change in its magnetosphere, presented as an observable change in the pulsar profile. Since then, the pulsar has been slowly recovering and we wish to observe this recovery with high-cadence observations to allow us to create a detailed time-resolved series of variations in the MSPs profile, polarisation, and other properties. Under this proposal, we wish to probe the profile recovery on weekly timescales (once per week per month), revealing additional short timescale behaviours, indicative of changes in the magnetosphere which are not available to other telescopes in the world, thanks to the Parkes UWL. This will also allow us to determine if the magnetosphere has returned to its original configuration or is settling into a new one. Understanding the recovery of this event is key for demonstrating that such pulsars are still viable clocks for use in gravitational wave studies, and in turn, provide us with new data on how the normally stable magnetosphere of this millisecond pulsar responds to an impulsive change in state.
DOI: 10.25919/9jbs-my85
title: Parkes observations for project P1171 semester 2023OCTS_14

description: The origin of Fast Radio Bursts (FRBs) is still unclear with a plethora of theoretical models for their origin. Several models predict associated multi-wavelength emission, but previous searches for optical, X-ray or gamma-ray counterparts of FRBs have not led to any detection. The Galactic magnetar SGR 1935+2154A has been observed to simultaneously emit FRB-like bursts and X-ray flares, which suggests that also extragalactic FRB sources may exhibit X-ray counterparts.
 
 Because of the high cost of X-ray satellites and in face of the relatively low FRB detection probability in their small field of view, coordinated radio and X-ray observations are logistically very difficult to set up. We propose a new approach using the X-ray satellite XMM-Newton and the Parkes/Murriyang radio telescope to put constraints on the theoretical models: We aim to conduct shadowing observations with the Parkes telescope to search for new FRBs in fields that are simultaneously covered by XMM-Newton. We hereby target regular XMM observations of nearby (low-z) galaxies, to increase our detection chances of possibly associated X-ray emission. In case of an FRB detection in the radio band, we will have guaranteed simultaneous X-ray coverage and will get detailed information about the associated X-ray spectrum and light curve since all XMM-Newton data will become public a year after the observation.
DOI: 10.15468/dl.9mxz9r
title: Occurrence Download

description: A dataset containing 4082 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saccharum officinarum L."
 ]
}

 The dataset includes 4082 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101698-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zsnfhv
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Saxifraga versicallosa C.Y.Wu ex H.Chuang"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101699-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18112/openneuro.ds004872.v1.0.3
title: Emo-FilM Annotations
DOI: 10.15468/dl.t3pgn7
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salix rhododendrifolia Z.Wang & P.Y.Fu"
 ]
}

 The dataset includes 71 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0101701-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.