DOI: 10.6084/m9.figshare.12629689.v1
title: Additional file 1 of Genome sequence and spore germination-associated transcriptome analysis of Corynespora cassiicola from cucumber

description: Additional file 1: Table S1 The numbers of genes and PHI-associated genes in C. cassiicola and other ascomycetes. Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. a Average is calculated using the gene amount in the 10 other plant pathogenic fungi (grey column). bP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). c PHI: pathogen-host interaction. d Percentage: The percentage of PHI-associated gene in protein-coding genes. Table S2 The number of genes for selected gene families in C. cassiicola and other ascomycetes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S3 G protein-coupled receptors in different fungal genomes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S4 Gene-encoding proteins for the MAPK signaling pathway in C. cassiicola HGCC. The colour of the protein names indicates the degree of conservation between S. cerevisiae and C. cassiicola HGCC proteins based on Blastp. Blue, e-value &lt;1e-5 and &gt; 1e-20; Green, e-value &lt;1e-100 and &gt; 1e-20; Red, e-value &lt;1e-100. Table S5 Gene-encoding proteins for the cAMP signaling pathway in C. cassiicola HGCC. Table S6 Gene-encoding proteins for the Ca2+ signaling pathway in C. cassiicola HGCC. Table S7 The number of protein kinases in different fungal genomes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S8 Protease genes classified by the MEROPS family in different fungal genomes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S9 Glycoside hydrolase in C. cassiicola and other phytopathogenic ascomycetes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S10 Transporters in C. cassiicola and other phytopathogenic ascomycetes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S11 Drug transporters in C. cassiicola and other phytopathogenic ascomycetes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S12 Cytochrome P450 genes classified by the CYP family in different fungal genomes. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S13 Numbers of backbone genes for the biosynthesis of secondary metabolites in different pathogenic fungi. a PHI: pathogen-host interaction. b Average is calculated using the gene/PHI-associated gene amount of each family in the 10 other plant pathogenic fungi (grey column). cP value (highlighted in bold for comparisons showing significant differences) is calculated by a non-parametric test (Mann-Whitney U test) of SSPS v18.0 using the gene amount of each family in C. cassiicola (HGCC, CCP and UM591) compared to the 10 other plant pathogenic fungi (grey column). The cutoff of significance is set at P &lt; 0.05 (highlighted). Fungal species: HGCC, C. cassiicola HGCC; CCP, C. cassiicola CCP; UM591, C. cassiicola UM591; CL, C. lunata; BM, B. maydis; CZM, C. zeae-maydis; PN, P. nodorum; ST, S. turcica; PTR, P. tritici-repentis; MO, M. oryzae; AF, A. flavus; FG, F. graminearum; BC, B. cinerea. Table S14 Putative small, cysteine-rich proteins (SCRPs) in C. cassiicola HGCC.