cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22643442.v1
title: The complete mitogenome of <i>Paratanakia chii</i> (Cypriniformes; Cyprinidae)

description: <i>Paratanakia chii</i> is a bitterling fish of the genus <i>Paratanakia</i>, subfamily Acheilognathinae and family Cyprinidae. The mitochondrial DNA sequence of <i>P. chii</i> is reported in this paper. The complete mitochondrial genome of <i>P. chii</i> is 16,575 bp in length, including 13 protein-coding genes (PCGs), 2 rRNA genes, 22 tRNA genes, and 1 displacement loop (D-loop). The genome sequence is consistent with those of most other carp. The majority of PCGs have AT- (Met) start codons and TA- end codons. The A + T contents of the genome, PCGs, transfer RNAs (tRNAs), and ribosomal RNAs (rRNAs) are 56.92%, 58.07%, 56.34%, and 54.21%, respectively. Phylogenetic analysis showed that <i>P. chii</i> is most closely related to <i>Tanankia himantegus</i>. These data will benefit relative ecological and phylogenetic studies.
DOI: 10.6084/m9.figshare.7963316
title: Additional file 1: of Reporting quality of pilot clinical trials in chronic kidney disease patients on hemodialysis: a methodological survey

description: Pilot clinical trials in chronic kidney disease patients on hemodialysis. The sample of pilot clinical trials in chronic kidney disease patients on hemodialysis included in the methodological survey. The data dictionary is included in the second tab. (XLS 158 kb)
DOI: 10.6084/m9.figshare.6390524
title: Additional file 6: of Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes

description: Table S3. Significantly enriched gene sets for each subtype. (XLS 883 kb)
DOI: 10.34740/kaggle/dsv/7590969
title: Top Spotify Songs in 73 Countries (Daily Updated)
DOI: 10.6084/m9.figshare.23167736.v1
title: Additional file 2 of CCP5 and CCP6 retain CP110 and negatively regulate ciliogenesis

description: Additional file 2: Table S1. Original data of replicated experiments used for quantification.
DOI: 10.6084/m9.figshare.23167739
title: Additional file 3 of CCP5 and CCP6 retain CP110 and negatively regulate ciliogenesis

description: Additional file 3: Table S2. Potential interaction proteins of CCP6 identified by CoIP-MS.
DOI: 10.6084/m9.figshare.23167759.v1
title: Additional file 4 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.6390518
title: Additional file 4: of Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes

description: Table S2. Confusion Matrices in internal training and validation sets. (XLS 25 kb)
DOI: 10.6084/m9.figshare.6390524.v1
title: Additional file 6: of Gene expression profiling of 1200 pancreatic ductal adenocarcinoma reveals novel subtypes

description: Table S3. Significantly enriched gene sets for each subtype. (XLS 883 kb)
DOI: 10.6084/m9.figshare.23167768.v1
title: Additional file 7 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.23167768
title: Additional file 7 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.13206354.v1
title: Bioinformatic prediction reveals posttranscriptional regulation of the chromosomal replication initiator gene <i>dnaA</i> by the attenuator sRNA rnTrpL in <i>Escherichia coli</i>

description: DnaA is the initiator protein of chromosome replication, but the regulation of its homoeostasis in enterobacteria is not well understood. The DnaA level remains stable at different growth rates, suggesting a link between metabolism and <i>dnaA</i> expression. In a bioinformatic prediction, which we made to unravel targets of the sRNA rnTrpL in <i>Enterobacteriaceae</i>, the <i>dnaA</i> mRNA was the most conserved target candidate. The sRNA rnTrpL is derived from the transcription attenuator of the tryptophan biosynthesis operon. In <i>Escherichia coli</i>, its level is higher in minimal than in rich medium due to derepressed transcription without external tryptophan supply. Overexpression and deletion of the rnTrpL gene decreased and increased, respectively, the levels of <i>dnaA</i> mRNA. The decrease of the <i>dnaA</i> mRNA level upon rnTrpL overproduction was dependent on <i>hfq</i> and <i>rne</i>. Base pairing between rnTrpL and <i>dnaA</i> mRNA <i>in vivo</i> was validated. In minimal medium, the <i>oriC</i> level was increased in the <i>ΔtrpL</i> mutant, in line with the expected DnaA overproduction and increased initiation of chromosome replication. In line with this, chromosomal rnTrpL mutation abolishing the interaction with <i>dnaA</i> increased both the <i>dnaA</i> mRNA and the <i>oriC</i> level. Moreover, upon addition of tryptophan to minimal medium cultures, the <i>oriC</i> level in the wild type was increased. Thus, rnTrpL is a base-pairing sRNA that posttranscriptionally regulates <i>dnaA</i> in <i>E. coli</i>. Furthermore, our data suggest that rnTrpL contributes to the DnaA homoeostasis in dependence on the nutrient availability, which is represented by the tryptophan level in the cell.
DOI: 10.5066/p9f091rp
title: Stream temperature and fish community data upstream and downstream of an impoundment in Big Hunting Creek, Maryland

description: This Data Release provides stream temperature data (13 sites) and fish community data (3 sites) in Big Hunting Creek, Maryland. Data were collected during summer baseflow conditions in 2023. This product supports brook trout conservation and restoration research needs identified by Maryland Department of Natural Resources. We collected temperature data with Onset ProV2 water temperature gages in slotted PVC housings mounted to the stream substrates with rebar. Gages recorded temperature every 15 minutes from July 11, 2023 (midnight) until July 15, 2023 (midnight) (337 observations per site). We collected fish community data following Maryland Department of Natural Resources protocols (Maryland Biological Stream Survey) with 2-pass backpack electrofishing and dipnets. All fishes were identified to species and released. Sites include locations upstream and downstream of an impoundment (Frank Bentz Pond) in Big Hunting Creek.
DOI: 10.6084/m9.figshare.23167759
title: Additional file 4 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.22639588
title: Additional file 1 of Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling

description: Additional file 1: Video: Optical recording of baseline network activity accompanying spontaneous fictive respiration; Sampling rate 20 Hz. Initially, unprocessed video is shown to facilitate identification of anatomical landmarks, thereafter images are subtracted from the image obtained 1.7 s earlier to increase the salience of Ca2+ transients. In the second half of the video, the sagittal face of the same preparation is shown following immunohistochemical processing to label phox2b (expressed in pFRG and other neurons), somatostatin (expressed along the VRG and preBotC), and choline acetyltransferase (expressed on premotoneurons). Available at: https://figshare.com/articles/media/Gourevitch_et_al_2023/21901119
DOI: 10.6084/m9.figshare.22639594
title: Additional file 5 of Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling

description: Additional file 5: Video: Loss of post-synaptic swallow network activation following synaptic blockade confirms disruption of synaptic transmission by blocker cocktail in networks close to the slice surface (P4 mouse, 0:26). The video consists of the following elements: 1. Raw image sequence of one inspiratory burst and fictive swallow in the intact network. 2. Differenced image sequence of inspiratory burst and fictive swallow in the intact network. Note strong post-synaptic activation of networks dorsal to VIIn. 3.Differenced image sequence of stimulus-induced network activation following synaptic blockade. Here post-synaptic activity is largely absent, confirming blockade patency. Available at: https://figshare.com/articles/media/SV4_210617_block_validation_mp4/21901188
DOI: 10.6084/m9.figshare.22639597.v1
title: Additional file 6 of Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling

description: Additional file 6: Video: Synchronized syncytial rhythmic activity overlaps with respiratory network activity The video consists of the following elements: 1. View of the preparation with VIIn outlined. 2. Differenced view of baseline activity over 3 respiratory cycles (10X, 20Hz, 18 ms exposure); regions of interest are superimposed over the final inspiratory burst. 3. Averaged differenced inspiratory activity with ROIs superimposed. 4. Differenced view of syncytial activity over 5 cycles (10X, 10Hz, 50 ms exposure); two large ROIs used to generate traces in Supplemental Fig. 2 are superimposed over the last syncytial activation wave. Available at: https://figshare.com/articles/media/SV4_2102152_2_syncytial_video_mp4/21901209
DOI: 10.6084/m9.figshare.22639552.v1
title: Additional file 4 of Excessive exogenous cholesterol activating intestinal LXRα-ABCA1/G5/G8 signaling pathway can not reverse atherosclerosis in ApoE−/− mice

description: Additional file 4. Statistics
DOI: 10.6084/m9.figshare.23167774
title: Additional file 9 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.23167774.v1
title: Additional file 9 of Genetic diversity and population divergence of Leonurus japonicus and its distribution dynamic changes from the last interglacial to the present in China

description: Supplementary Material 9
DOI: 10.6084/m9.figshare.22639620
title: Additional file 5 of Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer

description: Additional file 5. Table S4: Key genes.
DOI: 10.6084/m9.figshare.22639638.v1
title: Additional file 11 of Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer

description: Additional file 11. Table S9: Gene set enrichment analysis results.
DOI: 10.25444/nhlbi.24496225.v2
title: Data supporting "UPF1 ATPase autoinhibition and activation modulate RNA binding kinetics and NMD efficiency"

description: Dataset consists of a zip file containing data supporting the indicated figures from the manuscript, "UPF1 ATPase autoinhibition and activation modulate RNA binding kinetics and NMD efficiency." Files include raw and processed data from in vitro biochemical experiments performed using a fluorescence plate reader and Octet Biolayer Interferometry instruments, RT-qPCR data, uncropped gel images, and scripts used for data analysis.<br>
DOI: 10.6084/m9.figshare.14775399
title: Additional file 4 of Selective delignification of poplar wood with a newly isolated white-rot basidiomycete Peniophora incarnata T-7 by submerged fermentation to enhance saccharification

description: Additional file 4: Summary of P. incarnate T-7 unigenes annotations from transcriptomic sequencing.
DOI: 10.6084/m9.figshare.22639588.v1
title: Additional file 1 of Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling

description: Additional file 1: Video: Optical recording of baseline network activity accompanying spontaneous fictive respiration; Sampling rate 20 Hz. Initially, unprocessed video is shown to facilitate identification of anatomical landmarks, thereafter images are subtracted from the image obtained 1.7 s earlier to increase the salience of Ca2+ transients. In the second half of the video, the sagittal face of the same preparation is shown following immunohistochemical processing to label phox2b (expressed in pFRG and other neurons), somatostatin (expressed along the VRG and preBotC), and choline acetyltransferase (expressed on premotoneurons). Available at: https://figshare.com/articles/media/Gourevitch_et_al_2023/21901119
DOI: 10.6084/m9.figshare.22639608.v1
title: Additional file 1 of Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer

description: Additional file 1. Table S1: RNA modification-related genes.
DOI: 10.6084/m9.figshare.22639594.v1
title: Additional file 5 of Synchronization of inspiratory burst onset along the ventral respiratory column in the neonate mouse is mediated by electrotonic coupling

description: Additional file 5: Video: Loss of post-synaptic swallow network activation following synaptic blockade confirms disruption of synaptic transmission by blocker cocktail in networks close to the slice surface (P4 mouse, 0:26). The video consists of the following elements: 1. Raw image sequence of one inspiratory burst and fictive swallow in the intact network. 2. Differenced image sequence of inspiratory burst and fictive swallow in the intact network. Note strong post-synaptic activation of networks dorsal to VIIn. 3.Differenced image sequence of stimulus-induced network activation following synaptic blockade. Here post-synaptic activity is largely absent, confirming blockade patency. Available at: https://figshare.com/articles/media/SV4_210617_block_validation_mp4/21901188
DOI: 10.34740/kaggle/dsv/7590980
title: Full TMDB Movies Dataset 2024 (985K Movies)
DOI: 10.6084/m9.figshare.22639614.v1
title: Additional file 3 of Construction of an RNA modification-related gene predictive model associated with prognosis and immunity in gastric cancer

description: Additional file 3. Table S2: Differentially expressed genes in the high- and low-RNA modification score groups.
DOI: 10.5281/zenodo.10601292
title: Supporting data for "Probing single electrons across 300 mm spin qubit wafers"

description: Data that supports the findings of the paper, organized by Figure.
DOI: 10.5281/zenodo.10601293
title: Supporting data for "Probing single electrons across 300 mm spin qubit wafers"

description: Data that supports the findings of the paper, organized by Figure.
DOI: 10.6084/m9.figshare.14775424
title: Additional file 2 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

description: Additional file 2: Dataset S1. Micrococcaceae and Arthrobacter genomes used in this study.
DOI: 10.6084/m9.figshare.14775430
title: Additional file 4 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

description: Additional file 4: Dataset S3. Data used for enrichment analyses of functional categories.
DOI: 10.6084/m9.figshare.14775433
title: Additional file 5 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

description: Additional file 5: Dataset S4. Gene copy number data.
DOI: 10.6084/m9.figshare.22639671.v1
title: Additional file 1 of Mitochondrial creatine kinase 1 regulates the cell cycle in non-small cell lung cancer via activation of cyclin-dependent kinase 4

description: Additional file 1. The genome-wide transcriptome analysis using RNA-Seq in CKMT1 knockout or knockdown A549 cells. A549KO, CKMT1 knockout A549 cells; A549KD, CKMT1 knockdown A549 cells.
DOI: 10.6084/m9.figshare.14775439.v1
title: Additional file 7 of Linking genomic and physiological characteristics of psychrophilic Arthrobacter to metagenomic data to explain global environmental distribution

description: Additional file 7: Dataset S6. Metagenomes used in this study.
DOI: 10.15468/dl.4tjy25
title: Occurrence Download

description: A dataset containing 672 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-23.55469 7.64133,94.57031 7.64133,94.57031 74.75737,-23.55469 74.75737,-23.55469 7.64133))",
 "HasGeospatialIssue is false",
 "TaxonKey is Scaeva pyrastri (Linnaeus, 1758)"
 ]
}

 The dataset includes 672 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325131-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.i28mxv
title: Occurrence Download

description: A dataset containing 727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vampyrodes caraccioli (Thomas, 1889)",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 727 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008932-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt2hpa
title: Occurrence Download

description: A dataset containing 16873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.875 52.575,4.925 52.575,4.925 52.625,4.875 52.625,4.875 52.575))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 16873 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305461-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qz9bmy
title: Occurrence Download

description: A dataset containing 103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xanthoparmelia stenophylla (Ach.) Ahti & D.Hawksw.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 103 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002420-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4apshr
title: Occurrence Download

description: A dataset containing 1860 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Bolitoglossa altamazonica (Cope, 1874)",
 "TaxonKey is Bolitoglossa adspersa (Peters, 1863)"
 ]
}

 The dataset includes 1860 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008932-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvfpbx
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Squalius castellanus Doadrio, Perea & Alonso, 2007"
 ]
}

 The dataset includes 28 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0220889-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kv6hnh
title: Occurrence Download

description: A dataset containing 1051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.875 52.525,4.925 52.525,4.925 52.575,4.875 52.575,4.875 52.525))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1051 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305462-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lcdwvq
title: Occurrence Download

description: A dataset containing 818 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acantharchus pomotis (Baird, 1855)"
 ]
}

 The dataset includes 818 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005747-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rmbv7
title: Occurrence Download

description: A dataset containing 2032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Uma exsul Schmidt & Bogert, 1947",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2032 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008932-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh237076.07fu
title: SH237076.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh237077.07fu
title: SH237077.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.