cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1219084
title: Openaire Fp7 Post-Grant Open Access Pilot: Datasets And Reporting

description: *description edited on April 16 2018*

Versions in order of publication.

<strong>20180331_OpenAIRE2020_FP7PostGrantPilot_data.xlsx</strong>  : These datasets contain all datasets related to the publications funded within the OpenAIRE FP7 Post-Grant Open Access Pilot from its start in May 1st 2015 until February 28th 2018. The final report of the Pilot will be based on this dataset. 

<strong>20170831_DatasetD5.4.xlsx</strong>: This dataset contains all data related to the publications funded within the OpenAIRE FP7 Post-Grant Open Access Pilot in the two first years of its run, from May 2015 until April 30, 2017. The Pilot has received an extension of 10 months. This dataset will receive an update after the Pilot has come to a definitive end (February 2018).

A final version will be added to this record once all remaining accounting is wrapped up (July 2018). However, we are confident that the numbers presented here show trends and averages adequately, even if the absolute numbers will still change slightly. 

The Pilot website can be found at : https://postgrantoapilot.openaire.eu

To be eligible, a publication needed to comply with the following conditions: 


	Part of FP7 project that has ended, but no longer than two years ago at the moment of acceptance of publication P
	ublished in an Open Access Journal - we do not accept publications in so-called hybrid journals, which are journals that make individual articles Open Access but remain subscription based as a whole 
	Maximum 3 publications per project
	The funding cap is € 2000 for articles and € 6000 for monographs.


Some author fees exceed this cap slightly due to currency conversion. Any other anomalies in this dataset are to be ascribed to human error. Some adjustments might have been made on accounting level that are not reflected in this dataset. 

<br>
This dataset is available under  CC0 (https://creativecommons.org/publicdomain/zero/1.0/), which means that it is dedicated to the public domain. You are free to  copy, modify and distribute this dataset, even for commercial purposes, all without asking permission. Although it is not obliged, a credit to the OpenAIRE project is appreciated. At the OpenAIRE project, we are very interested in hearing how you have used this dataset. Feel free to ping us when you make use of it. <br>
author: Gwen Franck  gwen.franck@kb.nlOpenAIRE on Twitter @openaire_euinfo@openaire.eu
description: This dataset is related to OpenAIRE WP5 D5.4 (doi:10.5281/zenodo.998709)
DOI: 10.13012/b2idb-6946735_v2
title: Data from: Embryogenesis in the plant parasitic nematode Heterodera glycines is independent of host-derived stimulation

description: This dataset includes early embryogenesis and post-embryonic development of Soybean cyst nematode.
DOI: 10.22021/bbldntz201702
title: The Linked Open British National Bibliography – Books. 1950/2017-02 – N-Triples
DOI: 10.22021/bbldrdfz201702
title: The Linked Open British National Bibliography – Books. 1950/2017-02 – RDF/XML
DOI: 10.22021/bsldntz201702
title: The Linked Open British National Bibliography – Serials. 1950/2017-02 – N-Triples
DOI: 10.22021/bsldrdfz201702
title: The Linked Open British National Bibliography – Serials. 1950/2017-02 – RDF/XML
DOI: 10.5281/zenodo.1227086
title: Test123

description: description 1, 2, 3
DOI: 10.5281/zenodo.1227087
title: Test123

description: description 1, 2, 3
DOI: 10.6084/m9.figshare.c.3594560_d18.v1
title: Differentially expressed genes between grade II and grade III

description: The columns respectively represent gene symbol, mean value of expression level in grade II, mean value of expression level in grade III, t value, fold change, p value, adjusted p value (Benjamini & Hochberg).
DOI: 10.5281/zenodo.1231288
title: Annex Dataset

description: expKnl4 executions with phi hyperthreading disabled
DOI: 10.5281/zenodo.1231289
title: Annex Dataset

description: expKnl4 executions with phi hyperthreading disabled
DOI: 10.5281/zenodo.1345491
title: Iml Workshop Challenge On Jet Mass Regression

description: This dataset is associated with the LPCC IML (Lhc Physics Center at Cern Inter-experimental Machine Learning) working group.  It was produced for the second IML annual workshop (April 2018).

This dataset is part of a machine learning "challenge" on jet mass regression at future circular collider (FCC) conditions.  Further details can be found on the challenge page, here:

https://gitlab.cern.ch/IML-WG/IML_challenge_2018/wikis/home
DOI: 10.5281/zenodo.1345492
title: Iml Workshop Challenge On Jet Mass Regression

description: This dataset is associated with the LPCC IML (Lhc Physics Center at Cern Inter-experimental Machine Learning) working group.  It was produced for the second IML annual workshop (April 2018).

This dataset is part of a machine learning "challenge" on jet mass regression at future circular collider (FCC) conditions.  Further details can be found on the challenge page, here:

https://gitlab.cern.ch/IML-WG/IML_challenge_2018/wikis/home
DOI: 10.13012/b2idb-9154233_v1
title: Glycine tomentella GBS

description: GBS data from soybean lines carrying introgressions from Glycine tomentella. This project is led by Dr. Randy Nelson, USDA scientist at the University of Illinois. Fastq files contain raw Illumina data. Txt files are keyfiles containing barcodes for each genetic entity.
DOI: 10.5281/zenodo.1233003
title: Annex Dataset

description: expKnl4 changing ncpus
DOI: 10.5281/zenodo.1233004
title: Annex Dataset

description: expKnl4 changing ncpus
DOI: 10.5281/zenodo.1233016
title: Annex Dataset

description: expKnl4 executions with STARPU_MAIN_THREAD_CPUID=0 STARPU_WORKERS_CPUID=4 8 12 16 .. 272
DOI: 10.5281/zenodo.1233017
title: Annex Dataset

description: expKnl4 executions with STARPU_MAIN_THREAD_CPUID=0 STARPU_WORKERS_CPUID=4 8 12 16 .. 272
DOI: 10.6084/m9.figshare.c.3291326_d252.v2
title: unfolding mutation screen cluster heat map for interphotoreceptor retinoid binding protein domain 4

description: UMS cluster  map
DOI: 10.5281/zenodo.1233018
title: Annex Dataset

description: expKnl4 executions with phi governor as performance
DOI: 10.5281/zenodo.1233019
title: Annex Dataset

description: expKnl4 executions with phi governor as performance
DOI: 10.5281/zenodo.1233054
title: Annex Dataset

description: expKnl4 executions with STARPU_WORKERS_CPUID=4 8 12 16 ... 272
DOI: 10.5281/zenodo.1233055
title: Annex Dataset

description: expKnl4 executions with STARPU_WORKERS_CPUID=4 8 12 16 ... 272
DOI: 10.5281/zenodo.1233068
title: Annex Dataset

description: expKnl4 executions with STARPU_WORKERS_ID= seq 1 67
DOI: 10.5281/zenodo.1233069
title: Annex Dataset

description: expKnl4 executions with STARPU_WORKERS_ID= seq 1 67
DOI: 10.5281/zenodo.1233084
title: Annex Dataset

description: expKnl4 executions with tiles of 960x960
DOI: 10.5281/zenodo.1233085
title: Annex Dataset

description: expKnl4 executions with tiles of 960x960
DOI: 10.5281/zenodo.1233156
title: Annex Dataset

description: expKnl4 first execution
DOI: 10.5281/zenodo.1233157
title: Annex Dataset

description: expKnl4 first execution
DOI: 10.25377/sussex.5687875.v1
title: Data for research paper: The time course of ongoing activity during neuritis and following axonal transport disruption

description: <b>Data for paper appearing in 'Journal of Neurophysiology'</b><br><br>C- and A- fibre electrophysiology time course data following 
neuritis and vinblastine-induced axonal transport disruption. Data set includes conduction velocities, ongoing activity 
and axonal mechanical sensitivity data.<br><br><b>Abstract from research paper:</b><br>Local nerve inflammation
(neuritis) leads to ongoing activity and axonal mechanical sensitivity (AMS)
along intact nociceptor axons, and disrupts axonal transport.  This
phenomenon forms the most feasible cause of radiating pain, such as
sciatica.  We have previously shown that axonal transport disruption
without inflammation or degeneration also leads to AMS, but does not cause
ongoing activity at the time point when AMS occurs, despite causing cutaneous
hypersensitivity. However, there have been no systematic studies of ongoing
activity during neuritis or non-inflammatory axonal transport disruption. In
this study, we present the time course of ongoing activity from primary sensory
neurons following neuritis and vinblastine-induced axonal transport disruption.
Whereas 24% of C/slow Aδ-fiber neurons had ongoing activity during neuritis,
few (&lt;10%) A- and C-fiber neurons showed ongoing activity 1-15 days
following vinblastine treatment.  In contrast, AMS increased transiently at
the vinblastine treatment site, peaking on day 4-5 (28% of C/slow Aδ-fiber
neurons) and resolved by day 15. Conduction velocities were slowed in all
groups.  In summary, the disruption of axonal transport without
inflammation does not lead to ongoing activity in sensory neurons, including
nociceptors, but does cause a rapid and transient development of AMS. Since it
is proposed that AMS underlies mechanically-induced radiating pain, and a
transient disruption of axonal transport (as previously reported) leads to transient
AMS, it follows that processes that disrupt axonal transport, such as neuritis,
must persist to maintain AMS and the associated symptoms.

<br>
DOI: 10.5281/zenodo.1236236
title: Sci-Hub Downloads From Germany

description: This dataset contains Sci-Hub downloads from Germany from September 2015 to February 2016 and January 2017  to December 2017, split by month. It comprises filtered data from publicly available datasets, including missing data that was provided by Sci-Hub in May 2018. [1] [2] [3]

The ZIP-file contains 18 files of max. 25.5 MB.

 

Column 1: date and time (YYYY-MM-DD hh:mm:ss)

Column 2: DOI

Column 3: City

 

 

Dieser Datensatz enthält Sci-Hub Downloads aus Deutschland über den Zeitraum von September 2015 bis Februar 2016 und von Januar 2017 bis Dezember 2017, geteilt nach Monaten. Der Datensatz besteht aus gefilterten Daten von mehreren öffentlich zugänglichen Datensätzen, darunter fehlende Daten aus dem Jahr 2017, die von Sci-Hub im Mai 2018 nachgereicht wurden. [1] [2] [3]

Die ZIP-Datei enthält 18 Dateien von maximal 25,5 MB.

 

Spalte 1: Datum und Uhrzeit (JJJJ-MM-TT hh:mm:ss)

Spalte 2: DOI

Spalte 3: Stadt

 

 

[1] Bohannon, J., & Elbakyan, A. (2016). Data from: Who’s downloading pirated papers? Everyone [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.q447c

[2] Tzovaras, B. G. (2018). Sci-Hub Download Log Of 2017 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.1158301

[3] https://twitter.com/Sci_Hub/status/996925449577037824
DOI: 10.5281/zenodo.1236237
title: Sci-Hub Downloads From Germany

description: This dataset contains Sci-Hub downloads from Germany from September 2015 to February 2016 and January 2017  to December 2017, split by month. It comprises filtered data from two datasets. [1] [2]

The ZIP-file contains 18 files of max. 20.6 MB.

 

Column 1: date and time (YYYY-MM-DD hh:mm:ss)

Column 2: DOI

Column 3: City

 

 

Dieser Datensatz enthält Sci-Hub Downloads aus Deutschland über den Zeitraum von September 2015 bis Februar 2016 und von Januar 2017 bis Dezember 2017, geteilt nach Monaten. Der Datensatz besteht aus gefilterten Daten von zwei Datensätzen. [1] [2]

Die ZIP-Datei enthält 18 CSV-Dateien von maximal 20,6 MB.

 

Spalte 1: Datum und Uhrzeit (JJJJ-MM-TT hh:mm:ss)

Spalte 2: DOI

Spalte 3: Stadt

 

 

[1] Bohannon, J., & Elbakyan, A. (2016). Data from: Who’s downloading pirated papers? Everyone [Data set]. Dryad Digital Repository. https://doi.org/10.5061/dryad.q447c

[2] Tzovaras, B. G. (2018). Sci-Hub Download Log Of 2017 [Data set]. Zenodo. https://doi.org/10.5281/zenodo.1158301
DOI: 10.12751/g-node.8d6e59
title: Electrophysiological correlates of concept type shifts

description: The goal of the present ERP study is to find out, whether concept type (CT) shifts  can be indexed by N400, LAN and/or P600 or whether CT shifts are supported by mechanisms distinct from those that underly semantic or morphosyntactic processing of a determiner phrase
DOI: 10.25678/000044
title: Data for: Pesticide Risks in Small Streams - How to Get as Close as Possible to the Stress Imposed on Aquatic Organisms

description: The dataset contains concentrations profiles of 213 agricultural pesticides in surface water samples. Half-day composite samples were taken from five small streams in Switzerland from the beginning of March to the end of August 2015. Half-day samples from discharge events were measured individually, whereas half-day samples taken during dry weather periods between discharge events were pooled to samples of variable lengths (five days on average) and then measured resulting in 34 to 60 measured samples per site.
DOI: 10.5281/zenodo.1238211
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1238212
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.13012/b2idb-6967733_v1
title: Glycine soja GBS

description: GBS data for G. max x G. soja crosses, a project led by Dr. Randy Nelson.
DOI: 10.22021/bbldntz201807
title: The Linked Open British National Bibliography – Books. 1950/2018-07 – N-Triples
DOI: 10.22021/bbldrdfz201807
title: The Linked Open British National Bibliography – Books. 1950/2018-07 – RDF/XML
DOI: 10.22021/bcldntz201807
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-07 – N-Triples
DOI: 10.22021/bcldrdfz201807
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-07 – RDF/XML
DOI: 10.22021/bsldntz201807
title: The Linked Open British National Bibliography – Serials. 1950/2018-07 – N-Triples
DOI: 10.22021/bsldrdfz201807
title: The Linked Open British National Bibliography – Serials. 1950/2018-07 – RDF/XML
DOI: 10.12751/g-node.9c0912
title: Detection of Children/Youth with Fetal Alcohol Spectrum Disorder through Eye Movement, Psychometric and Neuroimaging Data

description: All the data for six assessments involved.
description: IsPartOf: Detection of Children/Youth with Fetal Alcohol Spectrum Disorder through Eye Movement, Psychometric and Neuroimaging Data
DOI: 10.5281/zenodo.635987
title: A Series Of Pathological Macromolecular Crystallography Datasets With Twinning And Other Lattice Disorders

description: These 11 datasets were collected at the Diamond Light Source and belong to the same protein, NAL (N-acetyl neuraminic acid lyase), which crystallised in 4 different crystal forms from the same crystallisation conditions producing crystals with the same morphology. The file names, where applicable (10/11 cases), contain the corresponding PDB deposition code.
DOI: 10.6084/m9.figshare.6115298.v2
title: social distance-exp5-57.rar

description: In the current investigation we
explore how the social distance influence the process of uncertain decision making .Thirty-five healthy subjects (15
female) completed a modified IGT for three social distance subjects (self,
friend and stranger) during Event Related
Potentials (ERP) recording. The
analysis was focused on the three different stages of uncertain decision making process. During the choice evaluation stage, the P300
for advantageous deck when gambling for a stranger was higher than when
gambling for him/herself and a friend, while results were contrary when
evaluating disadvantageous deck. During the response selection stage, gambling
for a stranger produced larger DPN amplitude than gambling for oneself. During
the feedback evaluation stage, FRN was larger when gambling for oneself than
for a stranger, and fP300 distinguished the low from the
high social distance. These results suggest that the modulation effect of
social distance worked differently in the distinct stages of uncertain
decision-making.
DOI: 10.13012/b2idb-4308433_v1
title: Dataset for: In-cell titration of small solutes controls protein stability and aggregation

description: This deposit contains all raw data and analysis from the paper "In-cell titration of small solutes controls protein stability and aggregation". Data is collected into several types:

1) analysis*.tar.gz are the analysis scripts and the resulting data for each cell. The numbers correspond to the numbers shown in Fig.S1. (in publication)

2) scripts.tar.gz contains helper scripts to create the dataset in bash format.

3) input.tar.gz contains headers and other information that is fed into bash scripts to create the dataset.

4) All rawData*.tar.gz are tarballs of the data of cells in different solutes in .mat files readable by matlab, as follows:
- Each experiment included in the publication is represented by two matlab files: (1) a calibration jump under amber illumination (_calib.mat suffix) (2) a full jump under blue illumination (FRET data)
- Each file contains the following fields:
       coordleft - coordinates of cropped and aligned acceptor channel on the original image
       coordright - coordinates of cropped and aligned donor channel on the original image]
       dataleft - a 3d 12-bit integer matrix containing acceptor channel flourescence for each pixel and time step. Not available in _calib files
       dataright - a 3d 12-bit integer matrix containing donor channel flourescence for each pixel and time step. This will be mCherry in _calib files and AcGFP in data files.
       frame1 - original image size
       imgstd - cropped dimensions
       numFrames - number of frames in dataleft and dataright
       videos - a structure file containing camera data. Specifically, videos.TimeStamp includes the time from each frame.
DOI: 10.5281/zenodo.61334
title: Facts Extracted From Eupmc Oa Publications 2016-05-01 To 2016-05-31

description: Named entities were extracted from the fulltext Open Access articles in EuropePMC by loading the text into ElasticSearch and querying with the content of the ContentMine dictionaries (http://github.com/ContentMine/dictionaries)
DOI: 10.5281/zenodo.1407300
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1407301
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.13012/b2idb-6701059_v1
title: University of Illinois at Urbana-Champaign Library Interlibrary Loan Lending Data 2009-2013

description: This dataset contains records of five years of interlibrary loan (ILL) transactions for the University of Illinois at Urbana-Champaign 
Library.  It is for the materials lent to other institutions during period 2009-2013.  It includes 169,890 transactions showing date; borrowing institution’s type, state and country; material format, imprint city, imprint country, imprint region, call number, language, local circulation count, ILL lending count, and OCLC holdings count.

The dataset was generated putting together monthly ILL reports. Circulation and ILL lending fields were added from the ILS records.  Borrower region and imprint region fields are created based on Title VI Region List.  OCLC holdings field has been added from WorldCat records.
DOI: 10.23645/epacomptox.5588575.v2
title: Chemistry Dashboard Data: DSSTox MS Ready Chemical Structures

description: The CompTox Chemistry Dashboard can be used by mass spectrometrists for the purpose of structure identification. A normal formula search would search the exact formula associated with any chemical, whether it include solvents of hydration, salts or multiple components. However, mass spectrometry detects ionized chemical structures and molecular formulae searches should be based on desalted, and desolvated structures with stereochemistry removed. We refer to these as “MS ready structures” and the MS-ready mappings are delivered as Excel Spreadsheets containing the Preferred Name, CAS-RN. DTXSID, Formula, Formula of the MS-ready structure and associated masses, SMILES and InChI Strings/Keys.
DOI: 10.5281/zenodo.1209308
title: Virtual Chip-Seq Predictions For Tf Binding In Cistrome And Encode-Dream Datasets

description: Each gzipped tarball contains BED files of Virtual ChIP-seq posterior probabilities.

Each BED file corresponds to binding of a TF in one chromosome (one of chr5, chr10, chr15, and chr20) in a validation cell type of Cistrome (virchipCistromePredictions_V2.0.0.tar.gz) or ENCODE-DREAM Challenge datasets (virchipDreamPredictions_V1.0.0.tar.gz).

 

V2.0.0 update:


	We provided our predictions on ENCODE-DREAM Challenge validation chromosomes (chr1, chr8, and chr21) in virchipDreamPredictions_V2.0.0.tar.gz
	FOXA1 predictions for binding in ch5 and chr10 of liver, and CTCF predictions for binding in chr10 of MCF-7 were missing from virchipCistromePredictions_V1.0.0.tar.gz
DOI: 10.5281/zenodo.1243913
title: Virtual Chip-Seq Predictions Of Binding Of 31 Transcription Factor In Roadmap Epigenomics Project Tissues

description: This dataset contains predictions of Virtual ChIP-seq for binding of 31 transcription factors in Roadmap Epigenomics dataset tissues with matched DNase-seq and RNA-seq data.

Tarball contains subfolders for each of the 31 TFs where Virtual ChIP-seq median MCC in validation cell types was &gt; 0.3.

Each subfolder contains gzipped BED files. Each file is named as &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;_Predictions.bed.gz. Columns correspond to Chromosome, Start, End, &lt;Tissue&gt;_&lt;Age&gt;_&lt;TF&gt;_&lt;Accession&gt;, Posterior probability

You can use the posterior probabilities provided in Virchip_PosteriorCutoffs_V2.0.0.tsv. These are posterior probability cutoffs which maximized MCC in H1-hESC cell type, or are set to 0.4 if there was no ChIP-seq data of that TF in H1-hESC (0.4 is the mode of all optimal posterior probability cutoffs in H1-hESC).
DOI: 10.23645/epacomptox.5588605.v3
title: Chemistry Dashboard Data: DSSTox Predicted NCCT Model

description: A number of property prediction models were developed using curated data as described in the publication “An automated curation procedure for addressing chemical errors and inconsistencies in public datasets used in QSAR modelling”. These property prediction models include logP, water solubility, bioconcentration factor and many others. The files include DTXSIDs, names and the predicted properties where possible. The models cannot predict properties for all chemicals contained in the database (for example, inorganics, organometallics and elements cannot be handled).
DOI: 10.23645/epacomptox.5588632.v3
title: Chemistry Dashboard Data: DSSTox Synonyms SDF File

description: The DSSTox synonyms file is in SDF format and includes the DSSTox substance identifier (DTXSID). The preferred name, the CAS Registry Number and the list of associated synonyms for over 720,000 chemicals. In order to view an SDF file you will need to have access to the appropriate piece of software to open an SDF files. Examples include ChemAxon JChem, ACD/ChemFolder or ChemDraw.
DOI: 10.23645/epacomptox.6253664
title: Chemistry Dashboard Data: DSSTox Synonyms Excel File

description: DSSTox synonyms file in excel format.
DOI: 10.22021/bbldntz201804
title: The Linked Open British National Bibliography – Books. 1950/2018-04 – N-Triples
DOI: 10.22021/bbldrdfz201804
title: The Linked Open British National Bibliography – Books. 1950/2018-04 – RDF/XML
DOI: 10.22021/bcldntz201804
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-04 – N-Triples
DOI: 10.22021/bsldntz201804
title: The Linked Open British National Bibliography – Serials. 1950/2018-04 – N-Triples
DOI: 10.22021/bsldrdfz201804
title: The Linked Open British National Bibliography – Serials. 1950/2018-04 – RDF/XML
DOI: 10.23645/epacomptox.6253664.v1
title: Chemistry Dashboard Data: DSSTox Synonyms Excel File

description: DSSTox synonyms file in excel format.
DOI: 10.23645/epacomptox.6253679
title: Chemistry Dashboard Data: DSSTox QSAR Ready File

description: QSAR ready excel file.
DOI: 10.22021/bcldrdfz201804
title: The Linked Open British National Bibliography – Forthcoming Books. 2018-04 – RDF/XML