cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5048329.v2
title: Review on Physically Flexible Nonvolatile Memory for Internet of Everything Electronics

description: Solid-state memory is an essential component of the digital age. With advancements in healthcare technology and the Internet of Things (IoT), the demand for ultra-dense, ultra-low-power memory is increasing. In this review, we present a comprehensive perspective on the most notable approaches to the fabrication of physically flexible memory devices. With the future goal of replacing traditional mechanical hard disks with solid-state storage devices, a fully flexible electronic system will need two basic devices: transistors and nonvolatile memory. Transistors are used for logic operations and gating memory arrays, while nonvolatile memory (NVM) devices are required for storing information in the main memory and cache storage. Since the highest density of transistors and storage structures is manifested in memories, the focus of this review is flexible NVM. Flexible NVM components are discussed in terms of their functionality, performance metrics, and reliability aspects, all of which are critical components for NVM technology to be part of mainstream consumer electronics, IoT, and advanced healthcare devices. Finally, flexible NVMs are benchmarked and future prospects are provided.
DOI: 10.6084/m9.figshare.5048326.v1
title: Approximations of Steel Cased wells for a DC resistivity experiment

description: In this example, we examine the impact of upscaling the well using- the assumption that the well is a solid rod of steel- averaging conductivity such that the product of the electrical conductivity and cross sectional area is the same in both cases<br>These experiments are conducted at DC. The initial model we consider is based on that shown Um, 2015: Finite element modelling of transient electromagnetic fields near steel-cased wells (https://doi.org/10.1093/gji/ggv193)<br>For the full write-up, please see the notebook Approximating_Steel_Cased_Wells_DC.ipynb<br><b>Reproducing these results</b>To run these examples, please see requirements.txt for the required packages (`pip install -r requirements.txt`). If you run into issues, please make an issue on github: https://github.com/lheagy/casingNotebooks/issues/new <br>SimPEG and the implementation for electrical and electromagnetic methods is described in (Cockett et al., 2015: https://doi.org/10.1016/j.cageo.2015.09.015 and Heagy et al., 2017: https://arxiv.org/abs/1610.00804)
DOI: 10.6084/m9.figshare.5048296
title: Building use by urban commensal avifauna in Melbourne central business district, Australia

description: The foraging and perching behaviours of urban commensal birds are well studied but disproportionately focused on green spaces (e.g. parks, backyards) rather than inner city urban sites. The relationship between building use and foraging was examined in free-ranging urban birds of the central business district (CBD) of Melbourne, Victoria, Australia during 2015–2016. The presence of common birds on urban buildings was attributable both to the time of day (Feral Pigeons and Silver Gulls in the morning, and House Sparrows in the evening) and the architectural period of the building (Feral Pigeons, House Sparrows and Common Mynas were found mostly on historic buildings). The proximity of buildings to tree cover had a significant impact on the presence of House Sparrows. Silver Gulls were present in large numbers only in areas with the least disturbance from traffic and trams (and their overhead wires). Feeding behaviours constituted a small portion of time budgets for all species (mean 4.3%; range 0–11%) compared to perching (28.2; 0–60%), walking (30.4; 0–80%) and flying (23.0; 0–54%), indicating that food sources were highly abundant and requiring little effort to acquire. Management implications of this study support control of food availability rather than costly and ineffective bird deterrent systems on buildings.
DOI: 10.6084/m9.figshare.5048311
title: Paleoclimate explains a unique proportion of the global variation in soil bacterial communities.

description: Data from " M. Delgado-Baquerizo, A. Bissett, D.J. Eldridge, F.T. Maestre, Ji-Z. He, J-T. Wang, K. Hamonts, Y-R. Liu, B.K. Singh, N. Fierer. Paleoclimate explains a unique amount of the global variation in soil bacterial communities across natural ecosystems.” There are fifteen spreadsheets with data. The spreadsheets "Dataset_OTU_Table" contain the OTU tables used in this paper. The spreadsheets "Dataset_environmental" contain the raw environmental data, including the paleoclimatic information, used in this paper. The spreadsheets "Dataset_metadata" contain the associated metadata, where a description of all the variables and units can be found.<br>
DOI: 10.6084/m9.figshare.5048296.v1
title: Building use by urban commensal avifauna in Melbourne central business district, Australia

description: The foraging and perching behaviours of urban commensal birds are well studied but disproportionately focused on green spaces (e.g. parks, backyards) rather than inner city urban sites. The relationship between building use and foraging was examined in free-ranging urban birds of the central business district (CBD) of Melbourne, Victoria, Australia during 2015–2016. The presence of common birds on urban buildings was attributable both to the time of day (Feral Pigeons and Silver Gulls in the morning, and House Sparrows in the evening) and the architectural period of the building (Feral Pigeons, House Sparrows and Common Mynas were found mostly on historic buildings). The proximity of buildings to tree cover had a significant impact on the presence of House Sparrows. Silver Gulls were present in large numbers only in areas with the least disturbance from traffic and trams (and their overhead wires). Feeding behaviours constituted a small portion of time budgets for all species (mean 4.3%; range 0–11%) compared to perching (28.2; 0–60%), walking (30.4; 0–80%) and flying (23.0; 0–54%), indicating that food sources were highly abundant and requiring little effort to acquire. Management implications of this study support control of food availability rather than costly and ineffective bird deterrent systems on buildings.
DOI: 10.6084/m9.figshare.5048116
title: Dataset for: Modeling Liver Electrical Conductivity during Hypertonic Injection

description: Metastases in the liver frequently grow as scattered tumor nodules which neither can be removed by surgical resection nor focally ablated. Previously, we have proposed a novel technique based on irreversible electroporation which may be able to simultaneously treat all nodules in the liver while sparing healthy tissue. The proposed technique requires increasing the electrical conductivity of healthy liver by injecting a hypersaline solution through the portal vein. Aiming to assess the capability of increasing the global conductivity of the liver by means of hypersaline fluids, here it is presented a mathematical model which estimates the NaCl distribution within the liver and the resulting conductivity change. The model fuses well-established compartmental pharmacokinetic models of the organ with saline injection models employed for resuscitation treatments and it considers changes in sinusoidal blood viscosity due to the hypertonicity of the solution. Here it is also described a pilot experimental study in pigs in which different volumes of NaCl 20% (from 100 to 200 ml) were injected through the portal vein at different flow rates (from 53 to 171 ml/min). The in vivo conductivity results fit those obtained by the model, both quantitatively and qualitatively, being able to predict the maximum conductivity with a 14.6% average relative error. The maximum conductivity value was 0.44 S/m which corresponds to increasing four times the mean basal conductivity (0.11 S/m). The results suggest that the presented model is well suited for predicting on liver conductivity changes during hypertonic saline injection.
DOI: 10.6084/m9.figshare.5048104
title: A three-dimensional digital brain atlas and stereotaxic coordinates for the Anna’s hummingbird, Calypte anna - June 2013

description: 3D imaging of transposed neuroanatomical images of a hummingbird.
DOI: 10.6084/m9.figshare.5048107
title: Dataset for Fixation-Pattern Similarity Analysis

description: Dataset used for our report:<br>Aversive Learning Changes Face-Viewing Strategies, as Revealed by Model-Based Fixation-Pattern Similarity Analysis<br><br>its first version can be found in Biorxiv:http://biorxiv.org/content/early/2017/04/15/125682<br><br>Stimuli used in the experiment is also present.
DOI: 10.6084/m9.figshare.5048116.v1
title: Dataset for: Modeling Liver Electrical Conductivity during Hypertonic Injection

description: Metastases in the liver frequently grow as scattered tumor nodules which neither can be removed by surgical resection nor focally ablated. Previously, we have proposed a novel technique based on irreversible electroporation which may be able to simultaneously treat all nodules in the liver while sparing healthy tissue. The proposed technique requires increasing the electrical conductivity of healthy liver by injecting a hypersaline solution through the portal vein. Aiming to assess the capability of increasing the global conductivity of the liver by means of hypersaline fluids, here it is presented a mathematical model which estimates the NaCl distribution within the liver and the resulting conductivity change. The model fuses well-established compartmental pharmacokinetic models of the organ with saline injection models employed for resuscitation treatments and it considers changes in sinusoidal blood viscosity due to the hypertonicity of the solution. Here it is also described a pilot experimental study in pigs in which different volumes of NaCl 20% (from 100 to 200 ml) were injected through the portal vein at different flow rates (from 53 to 171 ml/min). The in vivo conductivity results fit those obtained by the model, both quantitatively and qualitatively, being able to predict the maximum conductivity with a 14.6% average relative error. The maximum conductivity value was 0.44 S/m which corresponds to increasing four times the mean basal conductivity (0.11 S/m). The results suggest that the presented model is well suited for predicting on liver conductivity changes during hypertonic saline injection.
DOI: 10.6084/m9.figshare.5048104.v1
title: A three-dimensional digital brain atlas and stereotaxic coordinates for the Anna’s hummingbird, Calypte anna - June 2013

description: 3D imaging of transposed neuroanatomical images of a hummingbird.
DOI: 10.6084/m9.figshare.5048107.v1
title: Dataset for Fixation-Pattern Similarity Analysis

description: Dataset used for our report:<br>Aversive Learning Changes Face-Viewing Strategies, as Revealed by Model-Based Fixation-Pattern Similarity Analysis<br><br>its first version can be found in Biorxiv:http://biorxiv.org/content/early/2017/04/15/125682<br><br>Stimuli used in the experiment is also present.
DOI: 10.6084/m9.figshare.5048086
title: Data for: "Single-generation effects on terpenoid defenses in lodgepole pine populations following mountain pine beetle infestation"

description: The recent mountain pine beetle outbreak in western Canada provides an opportunity to study the selection and heritability of tree defenses. We examined terpenoid-based defenses of seedling lodgepole pines which were offspring of mature trees subjected to high levels of mountain pine beetle selective pressure. Seedlings were grown from one of three types of cones: old cones on live trees; young cones on live trees; and cones on trees killed by beetles. Offspring thus represented crosses of non-surviving (NS) x surviving (S), S x S, and NS x NS parents, respectively. Methyl jasmonate was used to induce a defensive reaction in the seedlings. Seed source had a significant effect on levels of ten different terpenes, but not on total terpene concentrations. When the seedlings were grouped by location and treatment type, the seedlings of different cone types could be almost entirely distinguished by terpene profiles.
DOI: 10.6084/m9.figshare.5048074
title: Hacking Data Education: It's an Adventure!

description: This poster was presented at the AMIA 2017 Joint Summits on Translational Science as part of the Big Data Education Hackathon session/competition organized by Philip Payne (WUSTL). It is a product of my personal artistic efforts as RedPen/BlackPen (@redpenblackpen), a webcomic that is focused on research, peer review, and academic life. The poster provides an overview of educational areas and approaches for big data for computational biologists but does so in a very engaging way.
DOI: 10.6084/m9.figshare.5048086.v1
title: Data for: "Single-generation effects on terpenoid defenses in lodgepole pine populations following mountain pine beetle infestation"

description: The recent mountain pine beetle outbreak in western Canada provides an opportunity to study the selection and heritability of tree defenses. We examined terpenoid-based defenses of seedling lodgepole pines which were offspring of mature trees subjected to high levels of mountain pine beetle selective pressure. Seedlings were grown from one of three types of cones: old cones on live trees; young cones on live trees; and cones on trees killed by beetles. Offspring thus represented crosses of non-surviving (NS) x surviving (S), S x S, and NS x NS parents, respectively. Methyl jasmonate was used to induce a defensive reaction in the seedlings. Seed source had a significant effect on levels of ten different terpenes, but not on total terpene concentrations. When the seedlings were grouped by location and treatment type, the seedlings of different cone types could be almost entirely distinguished by terpene profiles.
DOI: 10.6084/m9.figshare.5048059
title: Harari D data.xlsm

description: A program consisting of Participatory Ergonomics, Workplace Exercise and Physical Therapy was conducted for 22 months with 88 workers of a hearing aid company. The outcomes were complaints of musculoskeletal disorders and absenteeism measured by the Nordic Musculoskeletal Questionnaire. Outcomes were analyzed for 1) all eligible participants of the study, 2) only workers with MSDs at baseline, and 3) only workers without MSDs at baseline. We also measured workers’ perceptions about the intervention by using a Likert-based questionnaire addressing muscle pain, absenteeism, wellbeing/productivity at work and life habits.
DOI: 10.21942/uva.5048056.v1
title: NACCA Project Database Questionnaire Results

description: Results of the survey conducted in January 2016 during the NACCA Winter School 1 at the University of Maastricht.
DOI: 10.6084/m9.figshare.5048074.v2
title: Hacking Data Education: It's an Adventure!

description: This poster was presented at the AMIA 2017 Joint Summits on Translational Science as part of the Big Data Education Hackathon session/competition organized by Philip Payne (WUSTL). It is a product of my personal artistic efforts as RedPen/BlackPen (@redpenblackpen), a webcomic that is focused on research, peer review, and academic life. The poster provides an overview of educational areas and approaches for big data for computational biologists but does so in a very engaging way.
DOI: 10.6084/m9.figshare.5048023
title: Instances of the article "Bi-objective Scheduling on a Restricted Batching Machine" by Marta Cabo, José Luis González-Velarde, Edgar Possani, and Yasmín A. Ríos-Solís

description: Instances of the article "Bi-objective Scheduling on a Restricted Batching Machine" by Marta Cabo, José Luis González-Velarde, Edgar Possani, and Yasmín A. Ríos-Solís
DOI: 10.6084/m9.figshare.5047990
title: X-ray scattering data for: Sequential conformational transitions and alpha-helical supercoiling regulate a sensor histidine kinase

description: X-ray solution scattering data collected at BioCARS at APS and cSAXS at SLS respectively. The datasets have been normalized but not scaled to eachother. The solvent heating contribution has not been subtracted and the cSAXS data have not been convoluted with the BioCARS wavelength distribution. The data are provided as comma separated values with the q-vector to the far left and laser pump X-ray probe time-delays as ns (BioCARS) or s (cSAXS) in the first row (not applicable to heat data files).
DOI: 10.6084/m9.figshare.5047993
title: Robotic colorectal resection with and without the use of the new Integrated Table Motion for da Vinci Xi: a case matched study

description: <b>Purpose:</b> To compare operative and short-term outcomes of patients undergoing colorectal cancer surgery with the da Vinci Xi system with or without use of the integrated table motion (ITM) for da Vinci Xi.<b>Methods:</b> The intraoperative and short-term clinical outcome were compared, using case-control methodology (propensity scores approach to create 1:2 matched pairs), with a similar group of patients who underwent robotic colorectal surgery for cancer without the use of the ITM device (Xi only group).<b>Conclusions: </b>In this preliminary experience, the use of new ITM for da Vinci Xi in colorectal surgery, by enhancing workflow, resulted in a reduced overall robotic operative time, lower postoperative medical morbidity and possibly a lower conversion rates.
DOI: 10.6084/m9.figshare.5047990.v1
title: X-ray scattering data for: Sequential conformational transitions and alpha-helical supercoiling regulate a sensor histidine kinase

description: X-ray solution scattering data collected at BioCARS at APS and cSAXS at SLS respectively. The datasets have been normalized but not scaled to eachother. The solvent heating contribution has not been subtracted and the cSAXS data have not been convoluted with the BioCARS wavelength distribution. The data are provided as comma separated values with the q-vector to the far left and laser pump X-ray probe time-delays as ns (BioCARS) or s (cSAXS) in the first row (not applicable to heat data files).
DOI: 10.6084/m9.figshare.5047993.v1
title: Robotic colorectal resection with and without the use of the new Integrated Table Motion for da Vinci Xi: a case matched study

description: <b>Purpose:</b> To compare operative and short-term outcomes of patients undergoing colorectal cancer surgery with the da Vinci Xi system with or without use of the integrated table motion (ITM) for da Vinci Xi.<b>Methods:</b> The intraoperative and short-term clinical outcome were compared, using case-control methodology (propensity scores approach to create 1:2 matched pairs), with a similar group of patients who underwent robotic colorectal surgery for cancer without the use of the ITM device (Xi only group).<b>Conclusions: </b>In this preliminary experience, the use of new ITM for da Vinci Xi in colorectal surgery, by enhancing workflow, resulted in a reduced overall robotic operative time, lower postoperative medical morbidity and possibly a lower conversion rates.
DOI: 10.6084/m9.figshare.5047936
title: Dynamic behaviour of nanometre-sized defect clusters emitted from an atomic displacement cascade in Au at 50 K

description: We demonstrate the emission of nanometre-sized defect clusters from an isolated displacement cascade formed by irradiation of high-energy self-ions and their subsequent 1-D motion in Au at 50 K, using <i>in situ</i> electron microscopy. The small defect clusters emitted from a displacement cascade exhibited correlated back-and-forth 1-D motion along the [−1 1 0] direction and coalescence which results in their growth and reduction of their mobility. From the analysis of the random 1-D motion, the diffusivity of the small cluster was evaluated. Correlated 1-D motion and coalescence of clusters were understood via elastic interaction between small clusters. These results provide direct experimental evidence of the migration of small defect clusters and defect cascade evolution at low temperature.
DOI: 10.6084/m9.figshare.5047879
title: Modelling habitat conversion in miombo woodlands: insights from Tanzania

description: Understanding the drivers of natural habitat conversion is a major challenge, yet predicting where future losses may occur is crucial to preventing them. Here, we used Bayesian analysis to model spatio-temporal patterns of land-use/cover change in two protected areas designations and unclassified land in Tanzania using time-series satellite images. We further investigated the costs and benefits of preserving fragmenting habitat joining the two ecosystems over the next two decades. We reveal that habitat conversion is driven by human population, existing land-use systems and the road network. We also reveal the probability of habitat conversion to be higher in the least protected area category. Preservation of habitat linking the two ecosystems saving 1640 ha of land from conversion could store between 21,320 and 49,200 t of carbon in the next 20 years, with the potential for generating between US$ 85,280 and 131,200 assuming a REDD+ project is implemented.
DOI: 10.6084/m9.figshare.5047879.v1
title: Modelling habitat conversion in miombo woodlands: insights from Tanzania

description: Understanding the drivers of natural habitat conversion is a major challenge, yet predicting where future losses may occur is crucial to preventing them. Here, we used Bayesian analysis to model spatio-temporal patterns of land-use/cover change in two protected areas designations and unclassified land in Tanzania using time-series satellite images. We further investigated the costs and benefits of preserving fragmenting habitat joining the two ecosystems over the next two decades. We reveal that habitat conversion is driven by human population, existing land-use systems and the road network. We also reveal the probability of habitat conversion to be higher in the least protected area category. Preservation of habitat linking the two ecosystems saving 1640 ha of land from conversion could store between 21,320 and 49,200 t of carbon in the next 20 years, with the potential for generating between US$ 85,280 and 131,200 assuming a REDD+ project is implemented.
DOI: 10.6084/m9.figshare.5047858
title: Novel <i>PNKP</i> mutation in siblings with ataxia-oculomotor apraxia type 4

description: The phenotypic and genetic spectrum of ataxia with oculomotor apraxia (AOA) disorders is rapidly evolving and new technologies such as genetic mapping using whole exome sequencing reveal subtle distinctions among the various subtypes. We report a novel <i>PNKP</i> mutation in two siblings with progressive ataxia, abnormal saccades, sensorimotor neuropathy and dystonia consistent with the AOA type 4 phenotype. Laboratory evaluation revealed hypoalbuminemia, hypercholesterolemia with elevated LDL, elevated IgE levels and normal α fetoprotein levels. Eye movement examination demonstrated a marked saccade initiation defect with profound hypometric horizontal saccades. Vertical saccades were also affected but less so. Also present were conspicuous thrusting head movements when attempting to change gaze, but rather than an apraxia these were an adaptive strategy to take advantage of an intact vestibulo-ocular reflex to carry the eyes to a new target of interest. This is demonstrated in accompanying videos.
DOI: 10.6084/m9.figshare.5047855
title: Privacion_valencia

description: Datos de privación de la ciudad de valencia en ZIP<br>