cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28771088.v1
title: Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis

description: These data support the unpublished manuscript <i>"Seasonal Transcriptome Profile Across Three Different Tissues of the Andean Killifish Orestias ascotanensis"</i> (Maldonado et al., Manuscript ID: <code>SDATA-24-04380</code>).<b>1. Genome Assembly and Annotation</b><code><strong>Genome Assembly of Orestias ascotanensis.fa</strong></code>: Reference genome in FASTA format (originally published in <i>Di Genova et al. 2022</i>).<code><strong>annotation_Orestias (1).gtf</strong></code>: Structural annotation (GTF format) of gene models, used for RNA-seq alignment and transcript quantification.<code><strong>03_Gene_Annotation_Orestias_ascotanensis.csv</strong></code>: Detailed functional annotation of protein-coding genes (PCGs), including:Genomic coordinates (scaffold, start, end, strand).Gene/transcript IDs, assigned names, and protein products.Functional terms: InterPro domains, Gene Ontology (GO), KEGG Orthology (KO), and EC numbers.<b>2. Transcriptomic Data</b><code><strong>01_sample_info.csv</strong></code>: Metadata for RNA-seq samples (tissue, season, replicates, etc.).<code><strong>02_PCG_counts.csv</strong></code>: Raw read counts for all protein-coding genes across samples.<code><strong>04_DEGs.xlsx</strong></code>: Differentially expressed genes (DEGs) across conditions, with fold-change, <i>p</i>-values, and adjusted <i>p</i>-values.<b>3. Long Non-Coding RNA (lncRNA) Predictions</b><code><strong>Predicted_lncRNAs_Genomic_Locations_Orestias_ascotanensis.zip</strong></code>: BED files with genomic coordinates of lncRNAs predicted by four tools (CPAT, TransDecoder, FEELnc, RNAmining), including scaffold, coordinates, strand, and transcript IDs (where available).
DOI: 10.6084/m9.figshare.21379656.v2
title: Em dataset.csv

description: Germination frequencies obtained from a garden experiment. Two factors (treatments) manipulated: soil type and watering. Soil type (see legend below) Watering (yes or no) Germination (1 = yes; 0 = no) Frequency (number of seeds) <br> s0 = Substrate of the type of the reference station, taken around the mother plants, consisting of the typical thin stony and rocky soil s1 = Substrate like the previous one, but taken preferring where there were accumulations of above ground (usually from a few mm to two cm) s2 = Substrate rich in forest humus taken near the reference station under tree cover s3 = Substrate rich in yellowish orange brown clay (1/3) arranged on thin levels interspersed with each other, and with a component of gravel (1/3) and river sand (1/3) s4 = Cultivable substrate, deriving from a former cultivation, with the presence of clay and silt (about 1/3 + 1/3), fine sand (1/6) and slightly coarser sand (1/6) <br> <br>
DOI: 10.6084/m9.figshare.25144025.v2
title: <b>Psychometric Evaluation of the Insomnia Severity Index in 570,295 Chinese Adolescents: A Bifactor Item Response Theory Analysis</b>

description: Insomnia is a prevalent and significant issue among adolescents, yet its accurate measurement remains challenging. The <b>Insomnia Severity Index (ISI)</b>, a widely used self-report measure for assessing insomnia symptoms, lacks well-established factor structure and psychometric properties in Chinese adolescents. To address this gap, our study employed <b>bifactor modeling</b> and <b>item response theory (IRT)</b> to explore the dimensionality and reliability of the ISI in a large sample of <b>572,095 Chinese adolescents</b>.<b>Factor Structure Investigation</b>:We tested five alternative factor models using <b>confirmatory factor analysis (CFA)</b>.The best-fitting model was a <b>three-factor structure</b> with three correlated factors.However, <b>bifactor CFA</b> revealed that a <b>bifactor two-factor model</b>, excluding item 4, exhibited superior fit indices and accounted for more common variance in the ISI items.<b>Reliability and Discrimination</b>:Based on the bifactor two-factor model, we employed <b>bifactor multidimensional IRT (MIRT)</b> to assess item parameters and the test information function of the ISI.The results indicated that the ISI demonstrated <b>high reliability and discrimination</b> for measuring individuals with <b>average to high levels of insomnia severity</b>.However, its reliability and discrimination were lower when assessing individuals with <b>very low or very high levels of insomnia severity</b>.<b>Implications</b>:These findings have important implications for the <b>measurement and diagnosis of insomnia</b> in Chinese adolescents.Researchers and clinicians should consider the specific context and severity levels when utilizing the ISI in this population.In summary, the ISI proves to be a <b>reliable and valid measure</b> for assessing insomnia severity in Chinese adolescents, but its performance varies across different severity levels. Future research should explore additional factors influencing insomnia and refine measurement tools accordingly.
DOI: 10.6084/m9.figshare.25406173.v1
title: Elsafty_RBCs_Slide_10

description: Each one of (Elsafty_RBCs_Slide_1-25) contains the field images/patches of a specific slide/patient. The names of the patches start with the respective slide/patient number, followed by the unique patch/field number. There is a total of 47,363 patches with 1076x535 pixels size from the 25 slides/patients, the counts of patches per slide/patient are as follows: 1690, 1709, 2697, 2400, 1905, 1803, 2964, 3049, 2464, 2080, 1894, 1852, 2590, 2263, 3328, 983, 1066, 935, 1131, 1237, 1874, 1393, 1277, 1199, and 1580.
DOI: 10.6084/m9.figshare.12449147.v1
title: Spectral Dataset

description: 16,000+ leaf spectra for vascular plants
DOI: 10.6084/m9.figshare.13312457.v1
title: additional file.xlsx

description: Tetrahydrocurcumin (THC) performs anti-inflammatory effects on allergic asthma via modulating the gut microbiota, especially regulating the abundance of those bacteria with pro-inflammatory functions.
DOI: 10.6084/m9.figshare.25427845.v1
title: SRR3414629.uniq.sorted.bam

description: This bam file contains the sequence of mouse SRR3414269 bam file of unique reads. It is for an OMICS assignment.
DOI: 10.6084/m9.figshare.25633344.v2
title: Near-fault_SM_Turkey

description: The near-fault strong motion data for the Mw 7.8 mainshock and three aftershocks.
DOI: 10.6084/m9.figshare.28738577.v1
title: 4.7-supplement.docx

description: Objective: Whether captopril challenge test (CCT) could be performed while taking interfering medications is unclear. This study aimed to investigate the diagnostic accuracy of CCT in primary aldosteronism (PA) while taking interfering medications.Methods: This prospective study enrolled hypertensive patients to complete CCT while on and off interfering medications. Accuracy was assessed using area under the receiver operating characteristic curve (AUROC), referencing results of interfering medications.Results: Finally, 341 hypertensive patients completed the study, including 219 essential hypertension (EH) and 122 PA. For all subjects, PAC pre- and post-CCT on interfering medications were 132.0 and 94.5 pg/ml, respectively, not significantly different from that off interfering medications [PAC pre-CCT 141.0, p=0.083; PAC post-CCT 91.2 pg/ml, p=0.559]. PRC pre- and post-CCT on interfering medications were 10.7 and 17.0 μIU/ml, respectively, higher than that off interfering medications [PRC pre-CCT 6.6 μIU/ml, p&lt;0.001; PRC post-CCT 10.4μIU/ml, p&lt;0.001]. However, the suppression rate of PAC (28.8% vs. 33.5%, p=0.542)] and increasing rate of PRC (45.7% vs. 47.9%, p=0.635) off interfering medications were not significantly different from that on interfering medications. AUROC of PAC post-CCT taking interfering medications was 0.83, and when the optimal cutoff of PAC post-CCT was set at 110 pg/ml, the sensitivity was 0.71 and the specificity was 0.82. Conclusion: Using CCT to diagnose PA whilst taking interfering antihypertensive drugs is feasible in most cases.
DOI: 10.6084/m9.figshare.7934786.v1
title: gVCF_HG02649

description: 1000 Genomes gVCF mapped to hs37d5 for HG02649. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.16837405.v2
title: Script for fluorescence data treatment

description: Script for data processing used in the paper "Light in the cave: opal coating detection by UV-light illumination and fluorescence in rock art context" (hal-03383193)Data type : UV fluorescence emission spectraSoftware: Matlab<br>script_fluorescence_Dfluo200114b file: script for single fluorescence data treatment (Dfluo200114bm folder)<br>script_fluorescence_Dfluo_carto_200825 file: script for data treatment of fluorescence cartography measurment<br>
DOI: 10.6084/m9.figshare.6225563.v1
title: Raw data from Schmitz et al. 2018

description: Raw data from Schmitz et al. 2017.<br>GTFs of merged transcriptomes generated in this study as well as a csv containing the raw values of properties for each of the proteins analysed in the paper
DOI: 10.6084/m9.figshare.3549678.v1
title: Appendix A. Four color photographs of the study site showing experimental cages and supporting results of the parasitoid-exclusion experiment.

description: Four color photographs of the study site showing experimental cages and supporting results of the parasitoid-exclusion experiment.
DOI: 10.6084/m9.figshare.25331305.v1
title: Extraction data_PRISMA.xlsx

description: One of the key success factors of the digital transformation of governments is the uptake of e-government services by all the population. The objectives of this article are to apply an innovative approach to the study of digital inclusion: first, extract proposals to guide the implementation of public policies; second, validate the evidence of the proposals using a standardized scientific technique to evaluate social interventions, PRISMA 2020 in accordance with a specific protocol developed in accordance with a specific protocol developed to identify barriers, drivers and proposals involved. Age, education, digital skills, and income were the most frequent factors that appeared in our sample. Most recommended proposals were based on citizens´ education, either through information campaigns or by the creation of training programs targeted at the most vulnerable groups. Besides, more qualitative studies are needed to have an in-depth understanding of this phenomenon.
DOI: 10.6084/m9.figshare.26172349.v2
title: <b>Optimizing multiple ecosystem services in </b><b><i>Eucalyptus</i></b><b>-native tree plantations: Dual effects of artificial intercropping and natural </b><b>restoration</b>

description: The data of the "Optimizing multiple ecosystem services in Eucalyptus-native tree plantations: Dual effects of artificial intercropping and natural restoration"
DOI: 10.6084/m9.figshare.1017336.v2
title: A new acaremyid rodent (Caviomorpha, Octodontoidea) from Scarritt Pocket, Deseadan (late Oligocene) of Patagonia (Argentina)

description: ABSTRACTOctodontoidea is the most diverse caviomorph clade presently represented in South America by Octodontidae, Echimyidae, and Abrocomidae. Some evidence suggests that in the past they were taxonomically even more diverse, including several independent lineages with no modern representatives, sometimes considered as families. One of them is Acaremyidae, known until now from the Colhuehuapian-Colloncuran (early to early-middle Miocene) of Patagonia. Here we describe a new octodontoid rodent from the Deseadan (late Oligocene) of Scarritt Pocket (Patagonia): <i>Changquin woodi</i>, gen. et sp. nov. Cladistic analysis indicates that the new species is an acaremyid related to the Santacrucian (early Miocene) <i>Sciamys</i>. Acaremyidae was recovered as a monophyletic group. <i>C. woodi</i>, gen. et sp. nov., the oldest representative of Acaremyidae, extends the family biochron back to the late Oligocene, and indicates that acaremyids differentiated before the Deseadan. <i>C. woodi</i> represents the first Deseadan octodontoid displaying protohypsodont cheek teeth, showing that the Deseadan was a period of important diversification for octodontoids, as it was for the cavioids. <i>C. woodi</i> adds a new element to the faunal differences observed between Patagonian and Bolivian Deseadan faunas. A new U-Pb laser ablation inductively coupled plasma mass spectrometry (LA-ICPMS) date (27.17 ± 0.54 Ma) for Scarritt Pocket is provided.SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at http://www.tandfonline.com/UJVP
DOI: 10.6084/m9.figshare.12911171.v2
title: ZODIAC evaluation data

description: ZODIAC is a method for molecular formula annotation of small molecules in LC-MS/MS data. <br>We use five datasets to evaluate ZODIAC performance. The input mzML/mzXML files for the five datasets are available at MassIVE (https://massive.ucsd.edu/), with the following accession numbers: dendroides (MSV000080502), NIST1950 (MSV000081364), tomato (MSV000081463), diatoms (MSV000081731) and mice stool dataset (MSV000079949).<br>Here, we provide the processed spectrum files, SIRIUS and ZODIAC results (ZODIAC-evaluation-data.zip).The virtual machine containing input mzML files, OpenMS (https://www.openms.de/), SIRIUS and ZODIAC binaries and processing scripts, can be used to reconstruct (interim) results. To run the virtual machine use VirtualBox or VMware. The virtual Debian system credentials are: user ‘zodiac’ with password ‘zodiac’. For more details see the ‘README.txt’.<br><br>
DOI: 10.6084/m9.figshare.22272025.v4
title: Keller_etal_ProcRoySocB

description: Data and analysis code relevant for "Multi-locus genomic signatures of local adaptation to snow across the landscape in California populations of a willow leaf beetle" manuscript submission to the journal <em>Proceedings of Royal Society B</em>.
DOI: 10.6084/m9.figshare.21161839.v1
title: distance-matrix.csv

description: This data is a matrix version of Table-2 in the paper
DOI: 10.6084/m9.figshare.28484672.v1
title: Dataset for the green development of grassland-based livestock husbandry

description: This dataset pertains to the green development of grassland-based livestock husbandry.
DOI: 10.6084/m9.figshare.28771187.v1
title: customer_shopping_data.csv

description: This data set is based on customer shopping analysis<br>
DOI: 10.6084/m9.figshare.28121714.v1
title: SAARC_Nations_Death_Data

description: This paper explores mortality trends in the South Asian Association for Regional Cooperation (SAARC) countries: Afghanistan, Bangladesh, Bhutan, India, Maldives, Nepal, Pakistan, and Sri Lanka, from 1990 to 2019.
DOI: 10.17028/rd.lboro.28882664
title: [Raw Results] Ubuntu: Overall reflections from Survey Results on Energy Modelling Skills, Data Challenges, and Institutional Uptake

description: <b>[Raw Results] Ubuntu: Overall reflections from Survey Results on Energy Modelling Skills, Data Challenges, and Institutional Uptake</b> – This repository compiles combined survey data on the usability of energy modelling tools (clicSAND), the use of training video resources, the accessibility of Starter Data Kits, participant feedback from multiple EMP events, and usability insights from Gather Town interactions. It forms the supplementary material for the PhD thesis of <b>Carla Cannone</b>, providing a comprehensive overview of training outcomes, skills development, and institutional engagement.
DOI: 10.17028/rd.lboro.28882664.v1
title: [Raw Results] Ubuntu: Overall reflections from Survey Results on Energy Modelling Skills, Data Challenges, and Institutional Uptake

description: <b>[Raw Results] Ubuntu: Overall reflections from Survey Results on Energy Modelling Skills, Data Challenges, and Institutional Uptake</b> – This repository compiles combined survey data on the usability of energy modelling tools (clicSAND), the use of training video resources, the accessibility of Starter Data Kits, participant feedback from multiple EMP events, and usability insights from Gather Town interactions. It forms the supplementary material for the PhD thesis of <b>Carla Cannone</b>, providing a comprehensive overview of training outcomes, skills development, and institutional engagement.
DOI: 10.6084/m9.figshare.28083524.v2
title: Long-Term stability of irradiated solid-state pharmaceuticals: Raw Data and HPLC Methods

description: A set of four medications were exposed to mixed species beam simulated Galactic Cosmic Radiation (GCR) at the NASA Space Radiation Laboratory (NSRL) followed by a three-year storage period. The solid oral drug products (Acetaminophen [paracetamol] 500 mg tablets, Amoxicillin 500 mg capsules, Ibuprofen 400 mg tablets, and Promethazine 25 mg tablets) were selected based on operational relevance and previous testing experiments. Identical lots of each medication were assigned to four experimental groups: the non-irradiated Johnson Space Center control group, the non-irradiated traveling control group, the irradiation group I (GRSim, 0.5 Gy total dose), and the irradiation group II (GCRSim, 1.0 Gy total dose). Drug products were assessed for content of the active pharmaceutical ingredient (API) and the presence of degradation impurities. Dissolution testing was also performed to determine API release characteristics. Assessments were performed at 2, 18, and 34 months after irradiation. This file contains the raw data from the performed studies and stability-indicating HPLC methods used for analysis.
DOI: 10.6084/m9.figshare.28911614
title: BEFB datasets

description: Datasets of BEFB
DOI: 10.6084/m9.figshare.7193234.v1
title: Buffon's Needle Simulation Data

description: Pi estimates from a Monte Carlo Simulation of the single, double and triple grid variations of Buffon's Needle.
DOI: 10.15156/bio/sh1382431.10fu
title: SH1382431.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1382436.10fu
title: SH1382436.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1382438.10fu
title: SH1382438.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1382440.10fu
title: SH1382440.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1382441.10fu
title: SH1382441.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.