cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4813508
title: Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms

description: Three different datasets of vertebrae with corresponding computed tomography (CT) and ultrasound (US) images are presented. In the first dataset, three human patients lumbar vertebrae are presented and the US images are simulated from their CT images. The second dataset includes corresponding CT, US, and simulated US images of a phantom made from post-mortem canine cervical and thoracic vertebrae. The last phantom consists of the CT, US, and simulated US images of a phantom made from a post-mortem lamb lumbar vertebrae. For each of the two latter datasets, we also provide 21 landmark pairs of matching structures between the CT and US images and performed fiducial registration to acquire a silver standard for assessing image registration. The datasets can be used to test CT-US image registration techniques and to validate techniques that simulate US from CT.
DOI: 10.5281/zenodo.2483401
title: Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms

description: Three different datasets of vertebrae with corresponding computed tomography (CT) and ultrasound (US) images are presented. In the first dataset, three human patients lumbar vertebrae are presented and the US images are simulated from their CT images. The second dataset includes corresponding CT, US, and simulated US images of a phantom made from post-mortem canine cervical and thoracic vertebrae. The last phantom consists of the CT, US, and simulated US images of a phantom made from a post-mortem lamb lumbar vertebrae. For each of the two latter datasets, we also provide 21 landmark pairs of matching structures between the CT and US images and performed fiducial registration to acquire a silver standard for assessing image registration. The datasets can be used to test CT-US image registration techniques and to validate techniques that simulate US from CT.
DOI: 10.5281/zenodo.2652540
title: Multimodal 3D ultrasound and CT in image-guided spinal surgery: public database and new registration algorithms

description: <strong>There is a new version of the data available. Please update the most recent version.</strong> Three different datasets of vertebrae with corresponding computed tomography (CT) and ultrasound (US) images are presented. In the first dataset, three human patients lumbar vertebrae are presented and the US images are simulated from their CT images. The second dataset includes corresponding CT, US, and simulated US images of a phantom made from post-mortem canine cervical and thoracic vertebrae. The last phantom consists of the CT, US, and simulated US images of a phantom made from a post-mortem lamb lumbar vertebrae. For each of the two latter datasets, we also provide 21 landmark pairs of matching structures between the CT and US images and performed fiducial registration to acquire a silver standard for assessing image registration. The datasets can be used to test CT-US image registration techniques and to validate techniques that simulate US from CT
DOI: 10.15468/bqsp4t
title: A new species of Orthophytum (Bromeliaceae) from Chapada Diamantina, Bahia, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Louzada, Rafael Batista, Wanderley, Maria Das Graças Lapa (2011): A new species of Orthophytum (Bromeliaceae) from Chapada Diamantina, Bahia, Brazil. Phytotaxa 28: 27-30, DOI: 10.11646/phytotaxa.28.1.3, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.28.1.3
DOI: 10.6084/m9.figshare.13029039.v8
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i><sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i><sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i><sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i><sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i><sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.5519/qd.qpfvq52u
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (3672 records)
DOI: 10.15468/be3xvd
title: Two new water mite species of the genus Lebertia (Acari: Hydrachnidia: Lebertiidae) from Turkey

description: This dataset contains the digitized treatments in Plazi based on the original journal article Esen, Yunus, Dilkaraoğlu, Sibel, Erman, Orhan, Gerecke, Reinhard (2013): Two new water mite species of the genus Lebertia (Acari: Hydrachnidia: Lebertiidae) from Turkey. Journal of Natural History (J. Nat. Hist.) 47 (15 - 16): 1083-1092, DOI: 10.1080/00222933.2012.742168, URL: http://dx.doi.org/10.1080/00222933.2012.742168
DOI: 10.15468/erz4vk
title: Gomphonema yaominae sp. nov. Li, a new species of diatom (Bacillariophyta) from lakes near Yangtze River, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gong, Zhijun, Li, Yanling (2012): Gomphonema yaominae sp. nov. Li, a new species of diatom (Bacillariophyta) from lakes near Yangtze River, China. Phytotaxa 54: 59-64, DOI: 10.11646/phytotaxa.54.1.6, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.54.1.6
DOI: 10.15468/w568j2
title: Late Maastrichtian Radiolaria from ODP Leg 165 - Site 999 B, Colombian Basin

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kochhann, Karlos G. D., Baecker-Fauth, Simone, Fauth, Gerson (2013): Late Maastrichtian Radiolaria from ODP Leg 165 - Site 999 B, Colombian Basin. Geodiversitas 35 (1): 5-20, DOI: 10.5252/g2013n1a1, URL: http://dx.doi.org/10.5252/g2013n1a1
DOI: 10.6084/m9.figshare.13489719
title: Transcatheter versus surgical aortic valve replacement in patients with chronic obstructive pulmonary disease

description: Although a number of studies compared mortality after transcatheter aortic valve implantation (TAVI) with that after surgical aortic replacement (SAVR) in patients with chronic obstructive pulmonary disease (COPD), no meta-analysis of them has been conducted to date. To determine whether TAVI or SAVR is associated with better postprocedural survival in patients with COPD, a meta-analysis of all studies currently available was performed. <i>Design.</i> To identify all comparative studies of TAVI with SAVR in patients with COPD, PubMed and Web of Science were searched through January 2020. Studies meeting the following criteria were included in the present meta-analysis: the design was an observational comparative study or a randomized controlled trial; the study population was patients with COPD; patients were assigned to TAVI versus SAVR; and outcomes included all-cause mortality. Adjusted (if unavailable, unadjusted) odds or hazard ratios with their confidence intervals (CIs) of mortality for TAVI versus SAVR were extracted from each study. Study-specific estimates were combined in the random-effects model. <i>Results.</i> Six eligible studies with a total of 4771 patients with COPD were identified and included in the present meta-analysis. The meta-analysis indicated significantly lower early (in-hospital or 30-day) mortality after TAVI than after SAVR (odds ratio, 0.69; 95% CI, 0.53–0.90; <i>p</i> = .006) but no significant difference in midterm (1-year to 5-year) mortality between TAVI and SAVR (hazard ratio, 1.07; 95% CI, 0.79–1.44; <i>p</i> = .68). <i>Conclusions.</i> In patients with COPD, TAVI was associated with reduced early mortality, while midterm mortality appeared similar, as compared with SAVR.
DOI: 10.6084/m9.figshare.13489719.v1
title: Transcatheter versus surgical aortic valve replacement in patients with chronic obstructive pulmonary disease

description: Although a number of studies compared mortality after transcatheter aortic valve implantation (TAVI) with that after surgical aortic replacement (SAVR) in patients with chronic obstructive pulmonary disease (COPD), no meta-analysis of them has been conducted to date. To determine whether TAVI or SAVR is associated with better postprocedural survival in patients with COPD, a meta-analysis of all studies currently available was performed. <i>Design.</i> To identify all comparative studies of TAVI with SAVR in patients with COPD, PubMed and Web of Science were searched through January 2020. Studies meeting the following criteria were included in the present meta-analysis: the design was an observational comparative study or a randomized controlled trial; the study population was patients with COPD; patients were assigned to TAVI versus SAVR; and outcomes included all-cause mortality. Adjusted (if unavailable, unadjusted) odds or hazard ratios with their confidence intervals (CIs) of mortality for TAVI versus SAVR were extracted from each study. Study-specific estimates were combined in the random-effects model. <i>Results.</i> Six eligible studies with a total of 4771 patients with COPD were identified and included in the present meta-analysis. The meta-analysis indicated significantly lower early (in-hospital or 30-day) mortality after TAVI than after SAVR (odds ratio, 0.69; 95% CI, 0.53–0.90; <i>p</i> = .006) but no significant difference in midterm (1-year to 5-year) mortality between TAVI and SAVR (hazard ratio, 1.07; 95% CI, 0.79–1.44; <i>p</i> = .68). <i>Conclusions.</i> In patients with COPD, TAVI was associated with reduced early mortality, while midterm mortality appeared similar, as compared with SAVR.
DOI: 10.6084/m9.figshare.14681323
title: Raw data analysis code; Regression analysis code from Age and sex influence social interactions, but not associations, within a killer whale pod

description: R code to reproduce the construction of social networks from the raw data, bout analysis, data checking, and randomization-based null models, ;R code to reproduce dyadic and nodal regression analyses; uses the processed data from the aninet R package
DOI: 10.6084/m9.figshare.14681323.v1
title: Raw data analysis code; Regression analysis code from Age and sex influence social interactions, but not associations, within a killer whale pod

description: R code to reproduce the construction of social networks from the raw data, bout analysis, data checking, and randomization-based null models, ;R code to reproduce dyadic and nodal regression analyses; uses the processed data from the aninet R package
DOI: 10.6084/m9.figshare.14681326.v1
title: Drone observation data from Age and sex influence social interactions, but not associations, within a killer whale pod

description: Aggregated BORIS output of synchronous surfacing, contacts, and individual visibility for all videos
DOI: 10.15468/dxeqc4
title: Magnolia quetzal and Magnolia mayae, a new species and a new record, respectively, for the flora of Guatemala

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vázquez-García, J. Antonio, Véliz-Pérez, Mario Esteban, Tribouillier-Navas, Erick, Muñiz-Castro, Miguel A. (2013): Magnolia quetzal and Magnolia mayae, a new species and a new record, respectively, for the flora of Guatemala. Phytotaxa 76 (1): 1-6, DOI: 10.11646/phytotaxa.76.1.1, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.76.1.1
DOI: 10.15468/bqasmx
title: Towards a natural classification of Pteridaceae: inferring the relationships of enigmatic pteridoid fern species occurring in the Sino-Himalaya and Afro-Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Schneider, Harald, He, Lijuan, Hennequin, Sabine, Zhang, Xian-Chun (2013): Towards a natural classification of Pteridaceae: inferring the relationships of enigmatic pteridoid fern species occurring in the Sino-Himalaya and Afro-Madagascar. Phytotaxa 77 (4): 49-60, DOI: 10.11646/phytotaxa.77.4.1, URL: https://www.mendeley.com/catalogue/6cc1e530-31bd-3570-9a19-6fd716bcb1bd/
DOI: 10.15468/pg3twm
title: Two new species of Pogonognathellus (Collembola: Tomoceridae) from China, with a discussion of East Asian species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wang, Tianle, Yu, Daoyuan, Zhang, Feng (2013): Two new species of Pogonognathellus (Collembola: Tomoceridae) from China, with a discussion of East Asian species. Journal of Natural History (J. Nat. Hist.) 47 (17 - 18): 1243-1255, DOI: 10.1080/00222933.2012.752541, URL: http://dx.doi.org/10.1080/00222933.2012.752541
DOI: 10.6084/m9.figshare.14575647
title: Supplemental_Data_3_GSEA_Outputs.xlsx

description: Gene Set Enrichment Analysis Output Result Tables
DOI: 10.3886/e141122v1
title: state mental health agency expenditure, violent crime

description: Using state mental health agency data, US Census data, FBI Uniform Crime Reporting Data, and other public databases, we constructed a panel of the 50 US states over nine years. We used the resultant Stata .dta file in order to apply an instrumental variables empirical model with state- and time-specific fixed effects to adjust for policy endogeneity, omitted variable bias, and time trends.
description: States in the United States. Smallest Geographic Unit: US states
description: Crime rates created by dividing by population and multiplying by 100,000.
DOI: 10.6084/m9.figshare.14575650
title: Supplemental_Data_1_DESeq2 _DEGs_By_Segment.xlsx

description: Differentially expressed genes (DEGs) between formats and substrates within the same segment via DESeq2 with FPKMs for each DEG.
DOI: 10.15468/xcenmt
title: Revision of the family Asteroseriidae (Anthozoa, Scleractinia, Cretaceous)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Löser, Hannes (2013): Revision of the family Asteroseriidae (Anthozoa, Scleractinia, Cretaceous). Geodiversitas 35 (1): 21-29, DOI: 10.5252/g2013n1a2, URL: http://dx.doi.org/10.5252/g2013n1a2
DOI: 10.6084/m9.figshare.14575653
title: Supplemental_Data_2_DESeq2 _DEGs_By_Format.xlsx

description: Differentially expressed genes (DEGs) between segment within the same format via DESeq2 with FPKMs for each DEG.
DOI: 10.6084/m9.figshare.14575653.v1
title: Supplemental_Data_2_DESeq2 _DEGs_By_Format.xlsx

description: Differentially expressed genes (DEGs) between segment within the same format via DESeq2 with FPKMs for each DEG.
DOI: 10.7303/syn25705564
title: Acetylated Chromatin Domains as Functional Nexus Linking Chromosomal Organization to Cell- and Circuit-level Dysfunction in Schizophrenia and Bipolar Disorder
DOI: 10.5066/p9n3axpf
title: Enhanced Terrain Imagery of the Winchester 30 x 60 Minute Quadrangle from Lidar-derived Elevation Models at 3 Meter Resolution

description: This imagery dataset consists of 3 meter resolution, Lidar-derived imagery of the Winchester 30 x 60 minute quadrangle in northern Virginia, West Virginia, and western Maryland. The source data used to construct this imagery consists of 1 meter resolution lidar-derived digital elevation models (DEM). The lidar source data were compiled from different acquisitions published between 2011 and 2019. The data were processed using geographic information systems (GIS) software. The data is projected in North America Datum (NAD) UTM Zone 17 North. This representation illustrates the terrain as a hillshade with contrast adjusted to highlight local relief according to a topographic position index (TPI) calculation.
DOI: 10.5066/p9o06ha5
title: Lower Kittanning Coal Bed Known Areal Extent (Outcrop) in Pennsylvania, Ohio, West Virginia, and Maryland

description: This dataset is a polygon coverage of the resource areas of the Lower Kittanning coal zone. This dataset is the digital compilation of geologic and resource maps provided mostly by State geologic surveys and depicts the projected area of occurrence of the Lower Kittanning coal bed. The Lower Kittanning coal bed is in Ohio, West Virginia, western Pennsylvania, and western Maryland and is an important economic coal bed in the northern part of the Appalachian Basin. It is of additional importance because it is one of the coal beds that has potential for coalbed methane development within the Allegheny Group throughout most of the Appalachian foreland basin in Ohio, Pennsylvania, West Virginia, and Maryland. This file has been generalized from detailed geologic coverages found elsewhere in Professional Paper 1625-C.
DOI: 10.6084/m9.figshare.13029039.v9
title: Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i> <sub>CTX-M-14b</sub> in Europe

description: Global dissemination of ciprofloxacin-resistant <i>Salmonella</i> Kentucky has been observed over the past decades. In recent years, there have been reports of extended-spectrum β-lactamase (ESBL) producing <i>S</i>. Kentucky. Routine surveillance at the European Centre for Disease Prevention and Control (ECDC) detected cases with a ciprofloxacin-resistant <i>S</i>. Kentucky with the ESBL-gene <i>bla</i> <sub>CTX-M-14b</sub>. Ensuing research identified 78 cases in 2013–2018 in eight European countries. Compared to other <i>S</i>. Kentucky and non-typhoidal <i>Salmonella</i> infections, reported to the European Surveillance System, these cases were more likely to be elderly and to present urinary-tract infections. Bayesian time-scaled phylogeny on whole genome sequences of isolates from these cases and supplementary isolates from public sequence databases was used to infer the origin and spread of this clone. We dated the origin of the <i>bla</i> <sub>CTX-M-14b</sub> clone to approximately 2005 in Northern Africa, most likely in Egypt. The geographic origin predicted by the phylogenetic analysis is consistent with the patients’ travel history. Next to multiple introductions of the clone to Europe from Egypt, our analysis suggests that in some parts of Europe the clone might have formed a stable population, from which further spread has occurred. Comparative genomics indicated that the <i>bla</i> <sub>CTX-M-14b</sub> gene is present on the bacterial chromosome, within the type VI secretion system region. The <i>bla</i> <sub>CTX-M-14b</sub> gene is integrated downstream of the <i>hcp1</i> gene, on a 2854 bp plasmid fragment containing also IS<i>Ecp1</i>. This is the first report of a chromosomally integrated CTX-M gene in <i>Salmonella</i> spp. in Europe, previous studies having identified similar genes only on plasmids.
DOI: 10.5523/bris.3rjh9x2tbviqs2j6sbuuren8l1
title: Data from Atakul-Özdemir et al. 2021. X-Ray nanotomography and Electron Backscatter Diffraction demonstrate the crystalline, heterogeneous and impermeable nature of conodont white matter. Royal Society Open Science

description: This dataset contains three dimensional synchrotron x-ray (SRXTM) and ptychographic (PXCT) tomographic datasets and analyses of the early euconodont Teridontus nakamurai, from the Late Cambrian of Chatsworth Limestones (Queensland, Australia). The data accompanies the following paper: Ayse Atakul-Özdemir, Xander Warren, Peter G. Martin, Manuel Guizar-Sicairos, Mirko Holler, Federica Marone, Carlos Martínez-Pérez & Philip C.J. Donoghue. 2021. X-Ray nanotomography and Electron Backscatter Diffraction demonstrate the crystalline, heterogeneous and impermeable nature of conodont white matter. Royal Society Open Science.
DOI: 10.6084/m9.figshare.14675619
title: Drone Photographs from the Sediment Area 2020-7-16 Flight Date (Dover, NH, USA)

description: These are the raw drone aerial images taken of the sediment area on July 16, 2020 for the Evans et al. Sawyer Mill dam removal study. Alexandra Evans, a certified FAA Part 107 remote pilot, served as the remote pilot in command for the flight mission and was accompanied by spotters.<br>A DJI Phantom 3 Professional drone was used to take the images, equipped with its original RGB camera and a polarizing filter. Please see the referenced automated flight paths for details on altitude, image overlap, etc. The flight paths were executed using the Litchi flight app.<br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.14681376
title: quotes_with_all_features_plus_types.pkl

description: Quotes with all features including role, employer and media
DOI: 10.6084/m9.figshare.14681376.v1
title: quotes_with_all_features_plus_types.pkl

description: Quotes with all features including role, employer and media
DOI: 10.7284/141934
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP1408 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141935
title: Gyrocompass data collected during research cruise NBP1408 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141922
title: INS (Inertial Navigation System) data collected during research cruise NBP1408 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141933
title: INS (Inertial Navigation System) data collected during research cruise NBP1408 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141943
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise NBP1410 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/141950
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP1410 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.14680518
title: quotes_with_inferred_roles_and_employers.pkl

description: Quotes with metadata after inferring additional roles and employers