cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/s1pwt-21q09
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2018-11-08</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-57.0°, 57.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-23/rawdata/</p>Fjoh3_36.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-23/rawdata/Fjoh3_36.mrc"
        > <i class="download icon"></i> Download </a></p>

        Fjoh3_36_full.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-23/3dimage_98473/Fjoh3_36_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/x11eg-zr456
title: Unspecified

description: Raw data files of Unspecified
description: <strong>Tilt Series Date:</strong> 2018-11-08</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-57.0°, 57.0°), step: 3°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-19/rawdata/</p>Fjoh3_32.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-19/rawdata/Fjoh3_32.mrc"
        > <i class="download icon"></i> Download </a></p>

        Fjoh3_32_full.rec,  Reconstruction (Pixel Size 1.56 nm), 267.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2018-11-08-19/3dimage_98467/Fjoh3_32_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2zwjzp
title: Occurrence Download

description: A dataset containing 2810480441 species occurrences available in GBIF matching the query:
{
 "BasisOfRecord" : [
 "is Human Observation"
 ]
}

 The dataset includes 2810480441 records from 43862 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039966-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29117558
title: Corpus of MOFs-LLM

description: A domain-specific large language model, MOFs-LLM, is developed to accelerate the inverse design and synthesis of metal–organic frameworks (MOFs) for hydrogen storage. Trained on 210 million tokens derived from over 6,000 MOF-related publications and 15,000 crystal structures, the model integrates chemical knowledge with structural features to improve structure–property reasoning. Compared to baseline methods, MOFs-LLM achieves a 46.7% enhancement in capturing structure–property relationships. It enables the inverse design of 60 candidate frameworks optimized for both hydrogen storage performance and synthetic accessibility. Guided by the model, a novel MOF (Cu-LLMs-1) was synthesized in three experimental iterations, exhibiting a hydrogen uptake of 1.33 wt% at room temperature, ranking among the top five pure MOFs under comparable conditions. These findings highlight the potential of domain-trained language models to bridge virtual screening and experimental realization in materials discovery.
DOI: 10.15468/dl.hw62u8
title: Occurrence Download

description: A dataset containing 1353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bothrops asper (Garman, 1883)"
 ]
}

 The dataset includes 1353 records from 146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000617-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/xzpn-1h69
title: Norcross diatom surface sample dataset

description: Raw data for the Norcross diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r4k8-q311
title: Tilton Pond diatom surface sample dataset

description: Raw data for the Tilton Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/h4ny-mn45
title: Beaver Pond diatom surface sample dataset

description: Raw data for the Beaver Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/0tg0-q129
title: Bog Lake diatom surface sample dataset

description: Raw data for the Bog Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/266d-ge37
title: Crescent Lake diatom surface sample dataset

description: Raw data for the Crescent Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3amm-cx29
title: Mopang diatom surface sample dataset

description: Raw data for the Mopang diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6nhc-e296
title: Upper Sysladobsis Lake diatom surface sample dataset

description: Raw data for the Upper Sysladobsis Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/3ay0-ax24
title: Phylis Lake  pollen dataset

description: Raw data for the Phylis Lake  pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/588e-r791
title: Long (Jackman) diatom surface sample dataset

description: Raw data for the Long (Jackman) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/10qc-b286
title: Junior diatom surface sample dataset

description: Raw data for the Junior diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/z5k8-7222
title: Fourth Musquacook diatom surface sample dataset

description: Raw data for the Fourth Musquacook diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.p7a6xz
title: Occurrence Download

description: A dataset containing 5704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalius cephalus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 1984"
 ]
}

 The dataset includes 5704 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012586-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9s7hbp
title: Occurrence Download

description: A dataset containing 20432 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Setophaga kirtlandii",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 20432 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012587-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/9mkx-1m38
title: JOS Location 1 geochemistry dataset

description: Raw data for the JOS Location 1 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/drxm-0m47
title: JOS Location 1 geochemistry dataset

description: Raw data for the JOS Location 1 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/93sw-p038
title: JOS Location 1 geochemistry dataset

description: Raw data for the JOS Location 1 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.gt64uy
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Brazil, Paraguay)",
 "DatasetKey is one of (Xeno-canto - Bird sounds from around the world, Museu Paraense Emílio Goeldi - Ornithology Collection - Skin, LSUMZ Birds Collection, Field Museum of Natural History (Zoology) Bird Collection)",
 "OccurrenceStatus is Present",
 "TaxonKey is Melanopareia torquata"
 ]
}

 The dataset includes 69 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012588-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/0bkd-gh46
title: JOS Location 1 geochemistry dataset

description: Raw data for the JOS Location 1 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/szaw-zp24
title: JOS Location 2 geochemistry dataset

description: Raw data for the JOS Location 2 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dhgh-3s42
title: JOS Location 2 geochemistry dataset

description: Raw data for the JOS Location 2 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dhrq-fd35
title: JOS Location 2 geochemistry dataset

description: Raw data for the JOS Location 2 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bwaf-6395
title: JOS Location 2 geochemistry dataset

description: Raw data for the JOS Location 2 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.c732m6
title: Occurrence Download

description: A dataset containing 12255 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Country is France",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fagus sylvatica"
 ]
}

 The dataset includes 12255 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012589-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/0vdj-ca96
title: JOS Location 8 geochemistry dataset

description: Raw data for the JOS Location 8 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s6ev-as46
title: JOS Location 8 geochemistry dataset

description: Raw data for the JOS Location 8 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.18262071
title: The Miranova Matrix: An Operational Framework for Spacetime Emergence in BFSS Matrix Theory

description: The Miranova Matrix presents an operational framework for understanding spacetime emergence in BFSS Matrix Theory.

By conceptualising fundamental updates as discrete ticks, the framework distinguishes causal depth from emergent experienced time. Minimal generative structures and branching dynamics define lower bounds for system evolution, providing a coherent lens for observers and histories. This approach reframes temporal perception and lays a foundation for further exploration of nonlocal time, irreversibility, and observer-embedded structures.

This document is a speculative conceptual framework informed by existing work in matrix models and M-theory, particularly the BFSS matrix formulation.
DOI: 10.21233/1zdy-qk10
title: JOS Location 8 geochemistry dataset

description: Raw data for the JOS Location 8 geochemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qw4c-hp89
title: Dam Pond diatom surface sample dataset

description: Raw data for the Dam Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zs20-z555
title: Big Pleasant diatom surface sample dataset

description: Raw data for the Big Pleasant diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/s0cc-9y35
title: Sandy Pond diatom surface sample dataset

description: Raw data for the Sandy Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ce11-d308
title: Leighs Mills Pond diatom surface sample dataset

description: Raw data for the Leighs Mills Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bgrw-se14
title: Nicatous diatom surface sample dataset

description: Raw data for the Nicatous diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d4g2-nb50
title: East Musquash Lake diatom surface sample dataset

description: Raw data for the East Musquash Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/qn0d-t203
title: Lily Pond diatom surface sample dataset

description: Raw data for the Lily Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6qdq-ny22
title: Sherman Lake diatom surface sample dataset

description: Raw data for the Sherman Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.18259626
title: Datasets for: Genomic and epidemiological identification of Pseudomonas aeruginosa transmission chains and in hospital ICUs

description: This dataset supports the analyses presented in the manuscript:

Genomic and epidemiological identification of Pseudomonas aeruginosa transmission chains and in hospital ICUs

The archive contains raw and processed datasets used to infer transmission clusters and evaluate SNP-based thresholds, including:- epidemiological metadata- genomic distance matrices- intermediate processed tables used for figure generation

Due to size constraints, these data are not hosted directly on GitHub.

### Repository integrationThe accompanying analysis code is available at:https://github.com/luciagrami/PA_snp_threshold

After downloading and extracting the archive, files should be placed in a folder named `data/` at the root of the GitHub repository to reproduce the analyses.

### File formatsData are provided as CSV.

### Usage notesThe data are intended for research and reproducibility purposes. Users should cite this dataset when reusing the data.
DOI: 10.5281/zenodo.18259627
title: Datasets for: Genomic and epidemiological identification of Pseudomonas aeruginosa transmission chains and in hospital ICUs

description: This dataset supports the analyses presented in the manuscript:

Genomic and epidemiological identification of Pseudomonas aeruginosa transmission chains and in hospital ICUs

The archive contains raw and processed datasets used to infer transmission clusters and evaluate SNP-based thresholds, including:- epidemiological metadata- genomic distance matrices- intermediate processed tables used for figure generation

Due to size constraints, these data are not hosted directly on GitHub.

### Repository integrationThe accompanying analysis code is available at:https://github.com/luciagrami/PA_snp_threshold

After downloading and extracting the archive, files should be placed in a folder named `data/` at the root of the GitHub repository to reproduce the analyses.

### File formatsData are provided as CSV.

### Usage notesThe data are intended for research and reproducibility purposes. Users should cite this dataset when reusing the data.
DOI: 10.21233/pvh2-gs85
title: Duck Lake diatom surface sample dataset

description: Raw data for the Duck Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.