cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7551677
title: Model for Calibrating a Model to Thirty Years of Data to Capture the Accumulation of Chloride from Winter Deicers in a Shallow Aquifer

description: We created a ten layer model to simulate the flow and transport of chloride in Will County’s shallow aquifer with Groundwater Vistas software. This model is transient with yearly stress periods starting in 1950 and ending in 2020. The groundwater flow model was developed using the U.S. Geological Survey (USGS) finite difference code MODFLOW-NWT (McDonald and Harbaugh 1988; Niswonger et al., 2011) within the graphical user interface Groundwater Vistas 7.24 (Rumbaugh and Rumbaugh, 2020). We simulated chloride transport with the MODFLOW post-processing package MT3D-USGS (Bedekar et al., 2016). See Methods Section of 'Calibrating a Model to Thirty Years of Data to Capture the Accumulation of Chloride from Winter Deicers in a Shallow Aquifer' With questions email Cecilia Cullen (ccullen3@illinois,edu) or Daniel Abrams (dbabrams@illinois.edu)
description: {"references": ["Bedekar, V., Morway, E.D., Langevin, C.D., and Tonkin, M.( 2016). \"MT3D-USGS version 1: A U.S. Geological Survey release of MT3DMS updated with new and expanded transport capabilities for use with MODFLOW: U.S. Geological Survey Techniques and Methods\" 6-A53, 69 p. http://dx.doi.org/10.3133/tm6A53", "McDonald, M.G., and A.W. Harbaugh. (1988.) \"Techniques of Water-Resources Investigations of the United States Geological Survey. A Modular Three-Dimensional Finite-Difference Ground-Water Flow Model. Book 6, Modeling Techniques.\" Chapter A1. United States Geological Survey, Washington, DC", "Niswonger, R.G., Panday, Sorab, and Ibaraki, Motomu, (2011). \"MODFLOW-NWT, A Newton formulation for MODFLOW-2005\" U.S. Geological Survey Techniques and Methods 6\u2013A37, 44", "Rumbaugh, J.O. and D.B. Rumbaugh. (2020.) \"Groundwater Vistas 7.24 Build 101.\" Environmental Simulations, Inc. Leeport, PA."]}
DOI: 10.18434/mds2-2756
title: Entangling Superconducting Qubits over Optical Fiber - Towards Optimization and Implementation
DOI: 10.18434/mds2-2844
title: Optically Distributing Remote Two-node Microwave Entanglement using Doubly Parametric Quantum Transducers
DOI: 10.5281/zenodo.7407112
title: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group

description: This repository contains code and the data for reproducing results and figures in the associated manuscript: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group <strong>BFG-Analysis-main/ </strong>includes scripts and data to process Nanopore and Illumina reads, assemble BFG genomes, polish those genomes, and correct out-of-frame ORFs for MLST alignment. This also includes GenBank reference genomes referred to in the manuscript. <strong>tree_files/ </strong>includes pylogenetic tree files and aligned sequence files used in Figures 1, 5, and 6 <strong>acessory_regions/ </strong>includes a .fasta file of accessory regions in each genome from the study in which it was possible to calculate this (using Ppanggolin/panRGP) <strong>genomes/ </strong>contains different versions of BFG genomes with and without different types of polishing and frame-correction: <strong>genomes/pacbio_uncorrected/</strong> contains genomes sequenced with PacBio and assembled with PacBio software Analyzed for MLST trees in Figures: 1, 5, 6 Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka/</strong> contains genomes sequenced with Nanopore, assembled with Flye, then polished with racon and medaka. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka_pilon/</strong> contains genomes sequenced with Nanopore, assembled with Flye, polished with racon and medaka, then polished with Illumina reads with pilon. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/proovframe_BFG_genomes/</strong> contains genomes from the<em> pacbio_uncorrected/, nanopore_racon_medaka/, and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with Proovframe. Analyzed for Figures: 2, 3, 4, S2, S3, S4, S5, S6, S8 <strong>genomes/nanopore_MEGAN_corrected/</strong> contains genomes from the <em>nanopore_racon_medaka/ and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with MEGAN Analyzed for MLST trees in Figures: 1, 5, 6 <strong>nanodisco_difference_files/</strong> contains Nanodisco intermediate files reporting the difference in nanopore signal between native and PCR-generated gDNA at each genomic position. They refer to the genomes in directories <strong>genomes/nanopore_racon_medaka_pilon/, genomes/nanopore_racon_medaka/, genomes/pacbio_uncorrected/</strong>. Each isolate has a genome in only one of these directories. <strong>acessory_regions/ </strong>has a .fasta file of accessory sequences (per methods in manuscript) of relevant genomes.
DOI: 10.5281/zenodo.7407113
title: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group

description: This repository contains code and the data for reproducing results and figures in the associated manuscript: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group <strong>BFG-Analysis-main/ </strong>includes scripts and data to process Nanopore and Illumina reads, assemble BFG genomes, polish those genomes, and correct out-of-frame ORFs for MLST alignment. This also includes GenBank reference genomes referred to in the manuscript. <strong>tree_files/ </strong>includes pylogenetic tree files and aligned sequence files used in Figures 1, 5, and 6 <strong>genomes/ </strong>contains different versions of BFG genomes with and without different types of polishing and frame-correction: <strong>genomes/pacbio_uncorrected/</strong> contains genomes sequenced with PacBio and assembled with PacBio software Analyzed for MLST trees in Figures: 1, 5, 6 Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka/</strong> contains genomes sequenced with Nanopore, assembled with Flye, then polished with racon and medaka. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka_pilon/</strong> contains genomes sequenced with Nanopore, assembled with Flye, polished with racon and medaka, then polished with Illumina reads with pilon. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/proovframe_BFG_genomes/</strong> contains genomes from the<em> pacbio_uncorrected/, nanopore_racon_medaka/, and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with Proovframe. Analyzed for Figures: 2, 3, 4, S2, S3, S4, S5, S6, S8 <strong>genomes/nanopore_MEGAN_corrected/</strong> contains genomes from the <em>nanopore_racon_medaka/ and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with MEGAN Analyzed for MLST trees in Figures: 1, 5, 6
DOI: 10.5281/zenodo.7510225
title: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group

description: This repository contains code and the data for reproducing results and figures in the associated manuscript: Roving methyltransferases generate a mosaic epigenetic landscape and influence evolution in Bacteroides fragilis group <strong>BFG-Analysis-main/ </strong>includes scripts and data to process Nanopore and Illumina reads, assemble BFG genomes, polish those genomes, and correct out-of-frame ORFs for MLST alignment. This also includes GenBank reference genomes referred to in the manuscript. <strong>tree_files/ </strong>includes pylogenetic tree files and aligned sequence files used in Figures 1, 5, and 6 <strong>acessory_regions/ </strong>includes a .fasta file of accessory regions in each genome from the study in which it was possible to calculate this (using Ppanggolin/panRGP) <strong>genomes/ </strong>contains different versions of BFG genomes with and without different types of polishing and frame-correction: <strong>genomes/pacbio_uncorrected/</strong> contains genomes sequenced with PacBio and assembled with PacBio software Analyzed for MLST trees in Figures: 1, 5, 6 Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka/</strong> contains genomes sequenced with Nanopore, assembled with Flye, then polished with racon and medaka. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/nanopore_racon_medaka_pilon/</strong> contains genomes sequenced with Nanopore, assembled with Flye, polished with racon and medaka, then polished with Illumina reads with pilon. Analyzed in Figures: 5, 6, S7, S9 - S16 <strong>genomes/proovframe_BFG_genomes/</strong> contains genomes from the<em> pacbio_uncorrected/, nanopore_racon_medaka/, and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with Proovframe. Analyzed for Figures: 2, 3, 4, S2, S3, S4, S5, S6, S8 <strong>genomes/nanopore_MEGAN_corrected/</strong> contains genomes from the <em>nanopore_racon_medaka/ and nanopore_racon_medaka_pilon/ </em>directories that were frame-corrected with MEGAN Analyzed for MLST trees in Figures: 1, 5, 6 <strong>nanodisco_difference_files/</strong> contains Nanodisco intermediate files reporting the difference in nanopore signal between native and PCR-generated gDNA at each genomic position. They refer to the genomes in directories <strong>genomes/nanopore_racon_medaka_pilon/, genomes/nanopore_racon_medaka/, genomes/pacbio_uncorrected/</strong>. Each isolate has a genome in only one of these directories. <strong>acessory_regions/ </strong>has a .fasta file of accessory sequences (per methods in manuscript) of relevant genomes.
DOI: 10.35078/iwgfbh
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Uberaba | Município: Uberaba

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7551776
title: Dataset of "Exposure to airborne SARS-CoV-2 in four hospital wards and ICUs of Cyprus. A detailed study accounting for day-to-day operations and aerosol generating procedures."

description: The authors highly appreciate being contacted if the data is to be used for any purpose. The following data set was used in the study entitled "<strong>Exposure to airborne </strong><strong>SARS-CoV-2 in four hospital wards and ICUs of Cyprus. A detailed study accounting for day-to-day operations and aerosol generating procedures.</strong>" and published in <em>Heliyon</em> Journal. This study characterized the transmission dynamics of airborne SARS-CoV-2 in normal and intensive care units. The data were collected over the period of 2020. In total, 165 and 62 air and environmental samples, respectively, were collected in four COVID-19 wards and ICUs in Cyprus and analyzed by RT-PCR. The comparison between RT-PCR and an alternative method for SARS-CoV-2 detection in air that provides comparable results but is less cumbersome and time demanding, is also given in the tab "Comparison with BELD". The data from sampling airborne SARS-CoV-2 using a MOUDI impactor are not included in this document but can be found in the supplement of the relevant publication. Please refer to the manuscript and its supplementary material for more information about how the data was collected.
DOI: 10.5281/zenodo.7551775
title: Dataset of "Exposure to airborne SARS-CoV-2 in four hospital wards and ICUs of Cyprus. A detailed study accounting for day-to-day operations and aerosol generating procedures."

description: The authors highly appreciate being contacted if the data is to be used for any purpose. The following data set was used in the study entitled "<strong>Exposure to airborne </strong><strong>SARS-CoV-2 in four hospital wards and ICUs of Cyprus. A detailed study accounting for day-to-day operations and aerosol generating procedures.</strong>" and published in <em>Heliyon</em> Journal. This study characterized the transmission dynamics of airborne SARS-CoV-2 in normal and intensive care units. The data were collected over the period of 2020. In total, 165 and 62 air and environmental samples, respectively, were collected in four COVID-19 wards and ICUs in Cyprus and analyzed by RT-PCR. The comparison between RT-PCR and an alternative method for SARS-CoV-2 detection in air that provides comparable results but is less cumbersome and time demanding, is also given in the tab "Comparison with BELD". The data from sampling airborne SARS-CoV-2 using a MOUDI impactor are not included in this document but can be found in the supplement of the relevant publication. Please refer to the manuscript and its supplementary material for more information about how the data was collected.
DOI: 10.35078/pht95f
title: Replication Data for: Ficha epidemiológica de localidade: Distrito: Teófilo Otoni| Município: Santo Antônio do Jacinto

description: Levantamento Triatomínico com operações de campo ocorridas em Minas Gerais pela Superintendência de Campanhas de Saúde Pública (SUCAM) e FUNASA (Fundação Nacional de Saúde), no período de 1979 a 1999, objetivando a busca da presença de vetores da doença de Chagas ou de vestígios dessa presença. A partir dela são orientadas as operações com inseticida (pt) Triatomine survey with field operations carried out in Minas Gerais by the Public Health Campaigns Superintendence (SUCAM) and FUNASA (National Health Foundation), from 1979 to 1999, aiming to search for the presence of Chagas disease vectors or traces of that presence. From it, operations with insecticide are guided (en) Encuesta de triatominos con operaciones de campo realizada en Minas Gerais por la Superintendencia de Campañas de Salud Pública (SUCAM) y FUNASA (Fundación Nacional de Salud), de 1979 a 1999, con el objetivo de buscar la presencia de vectores de la enfermedad de Chagas o rastros de esa presencia. Desde ella se orientan las operaciones con insecticida (es)
DOI: 10.5281/zenodo.7551877
title: Does physical weight alter the mental representation of the body? Evidence from motor imagery in obesity

description: This is the dataset associated with "Does physical weight alter the mental representation of the body? Evidence from motor imagery in obesity"
DOI: 10.5281/zenodo.7551876
title: Does physical weight alter the mental representation of the body? Evidence from motor imagery in obesity

description: This is the dataset associated with "Does physical weight alter the mental representation of the body? Evidence from motor imagery in obesity"
DOI: 10.5281/zenodo.7233403
title: DeepStat WP5 Solar Panel Dataset

description: The DeepSolaris/ DeepGeoStat dataset was developed in two projects with the same names, during the period 2017 - 2022. The dataset contains 20m x 20m cutouts from an aerial image of the Netherlands. Multiple annotators labeled each cutout for the presence or absence of solar panels. The dataset can be used to train machine or deep learning models on a solar panel classification task. The dataset contains cutouts from the 2018 high-resolution (DOP 10) aerial image of the Netherlands. Each cutout is 200x200 pixels which translates to a 20m x 20m grid. Cutouts were sampled from two nearby regions in the Netherlands: 1. The region around the city of <em>Heerlen</em> 2. The region around the city of <em>Valkenburg</em> Between both regions, a 100m strip was left free in which no cutouts were sampled. Both image subsets are therefore independent of each other. In total 26 annotators, annotated 63258 unique pictures with 200795 annotations; 34523 positive annotations indicating that the annotator saw a solar panel in the image, and 166272 negatives indicating that the annotator didn't see a solar panel in the image. More information can be found in the README.md in the archive. Python source code for training models on this dataset can be found here: https://gitlab.com/CBDS/deepgeostat-wp-5. PyTorch weights for a trained model can be found here: https://zenodo.org/record/7547703#.Y8l0phPMLap. This research was conducted under: the ESS action 'Merging Geostatistics and Geospatial Information in Member States' (grant agreement no.: 08143.2017.001-2017.408), under the ESS topic B5674-2020-GEOS (project 101033951 2020-NL-GEOS-DEEP-GEO-STAT), an investment of [Statistics Netherlands](https://www.cbs.nl) for the development of Deep Learning models, practices, and methodology. The researchers want to furthermore thank everyone involved in helping to create and annotate this dataset.
DOI: 10.5519/qd.acmcbvjt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (450 records)
DOI: 10.5517/ccdc.csd.cc222pkf
title: CCDC 1909214: Experimental Crystal Structure Determination

description: Related Article: Hui Kong, Siyu Liu, Yaqiong Wang, Qian Xu, Keli Li, Pengtao Ma, Jingping Wang, Jingyang Niu|2021|Inorg.Chem.|60|15759|doi:10.1021/acs.inorgchem.1c02417
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2669j8
title: CCDC 2031849: Experimental Crystal Structure Determination

description: Related Article: Han-Yue Zhang, Ren-Gen Xiong|2023|Chem.Commun.|59|920|doi:10.1039/D2CC06408A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26bt9p
title: CCDC 2036182: Experimental Crystal Structure Determination

description: Related Article: Han-Yue Zhang, Ren-Gen Xiong|2023|Chem.Commun.|59|920|doi:10.1039/D2CC06408A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b5yt9
title: CCDC 2150681: Experimental Crystal Structure Determination

description: Related Article: Jian Li, Jina Sun, Xianglei Zhang, Ruxue Zhang, Qian Wang, Lin Wang, Leike Zhang, Xiong Xie, Chunpu Li, Yu Zhou, Jiang Wang, Gengfu Xiao, Fang Bai, Hong Liu|2022|Chem.Commun.|59|868|doi:10.1039/D2CC06371A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bn6s0
title: CCDC 2164382: Experimental Crystal Structure Determination

description: Related Article: Katarzyna Fedoruk, Dawid Drozdowski, Mirosaw Maczka, Jan K. Zareba, Dagmara Stefańska, Anna Gagor, Adam Sieradzki|2022|Inorg.Chem.|61|15520|doi:10.1021/acs.inorgchem.2c02206
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cxdj7
title: CCDC 2202039: Experimental Crystal Structure Determination

description: Related Article: Mengtan Liu, Adam H. Slavney, Songsheng Tao, Ryan D. McGillicuddy, Cassia C. Lee, Malia B. Wenny, Simon J. L. Billinge, Jarad A. Mason|2022|J.Am.Chem.Soc.|144|22262|doi:10.1021/jacs.2c10449
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d13td
title: CCDC 2205613: Experimental Crystal Structure Determination

description: Related Article: Julie Pineau, Luís M. P. Lima, Marie M. Le Roy, Séverine Marionneau-Lambot, Marie Cordier, Patricia Le Saëc, Jan Rijn Zeevaart, Cathryn H. S. Driver, Alain Faivre-Chauvet, Nathalie Le Bris, Raphaël Tripier|2023|Chem.Commun.|59|888|doi:10.1039/D2CC06602E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d2x6m
title: CCDC 2207330: Experimental Crystal Structure Determination

description: Related Article: Víctor  García Lopez|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d5ny6
title: CCDC 2209988: Experimental Crystal Structure Determination

description: Related Article: Sven van Vliet, Johannes G. H. Hermens, Youxin Fu, Lukas Pfeifer, Ben L. Feringa|2023|Chem.Commun.|59|884|doi:10.1039/D2CC05336E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25824/redu/3yokhr
title: Supporting_Information-Biomacromolecules.rar