cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.m151q
title: Data from: Large‐scale species delimitation method for hyperdiverse groups

description: Accelerating the description of biodiversity is a major challenge as
 extinction rates increase. Integrative taxonomy combining molecular,
 morphological, ecological and geographical data is seen as the best route
 to reliably identify species. Classic molluscan taxonomic methodology
 proposes primary species hypotheses (PSHs) based on shell morphology.
 However, in hyperdiverse groups, such as the molluscan family Turridae,
 where most of the species remain unknown and for which homoplasy and
 plasticity of morphological characters is common, shell‐based PSHs can be
 arduous. A four‐pronged approach was employed to generate robust species
 hypotheses of a 1000 specimen South‐West Pacific Turridae data set in
 which: (i) analysis of COI DNA Barcode gene is coupled with (ii) species
 delimitation tools GMYC (General Mixed Yule Coalescence Method) and ABGD
 (Automatic Barcode Gap Discovery) to propose PSHs that are then (iii)
 visualized using Klee diagrams and (iv) evaluated with additional
 evidence, such as nuclear gene rRNA 28S, morphological characters,
 geographical and bathymetrical distribution to determine conclusive
 secondary species hypotheses (SSHs). The integrative taxonomy approach
 applied identified 87 Turridae species, more than doubling the amount
 previously known in the Gemmula genus. In contrast to a predominantly
 shell‐based morphological approach, which over the last 30 years proposed
 only 13 new species names for the Turridae genus Gemmula, the integrative
 approach described here identified 27 novel species hypotheses not linked
 to available species names in the literature. The formalized strategy
 applied here outlines an effective and reproducible protocol for
 large‐scale species delimitation of hyperdiverse groups.
description: 28S28S nexus
 fileCOICOI nexus
 filePuillandre et al. -
 Supplementary materialSupplementary material
 S1, S2 and S3. Please note: the Tables S1 and S2 are also provided in
 Excel format as "Sup mat 1 - genetic structure.xls" and
 "Sup mat 2 - specimens list.xls"Sup mat 1 - genetic
 structureGenetic structure
 calculated with the COI and 28S genes for respectively eight and five PSH.
 Fst values are calculated between each pair of stations for which at least
 six specimens were available. Into parentheses: number of specimens. An
 AMOVA was also performed for the PSH 67 between two groups (Philippines
 and Vanuatu) and four populations in the Vanuatu.Sup mat 2 - specimens
 listList of the 1,000
 specimens analysed in this study.
DOI: 10.5061/dryad.pg8n5
title: Data from: Reduced male fertility is common but highly variable in form and severity in a natural house mouse hybrid zone

description: Barriers to gene flow between naturally hybridizing taxa reveal the
 initial stages of speciation. Reduced hybrid fertility is a common feature
 of reproductive barriers separating recently diverged species. In house
 mice (Mus musculus), hybrid male sterility has been studied extensively
 using experimental crosses between subspecies. Here, we present the first
 detailed picture of hybrid male fertility in the European M. m. domesticus
 – M. m. musculus hybrid zone. Complete sterility appears rare or absent in
 natural hybrids but a large proportion of males (~30%) have sperm count or
 relative testis weight below the range in pure subspecies, and likely
 suffer reduced fertility. Comparison of a suite of traits related to
 fertility among subfertile males indicates reduced hybrid fertility in the
 contact zone is highly variable among individuals and ancestry groups in
 the type, number and severity of spermatogenesis defects present. Taken
 together, these results suggest multiple underlying genetic
 incompatibilities are segregating in the hybrid zone, which likely
 contribute to reproductive isolation between subspecies.
description: ReproPhenotypes_Turner2011evolutionReproductive phenotype data. Column headings are defined in "Materials and Methods."MatingPairData_Turner2011evolutionMating pair data. Admixture categories are defined in "Materials and Methods."SNPstreamWildHybrids_Turner2011evolutionGenotype data, wild-caught hybrids.SNPchip5cMlabBredMales_Turner2011evolutionGenotype data for lab-bred hybrid males. 1 marker/ ~5 cM, from Mouse Diversity Array.
DOI: 10.5061/dryad.7d580
title: Data from: The million-year wait for macroevolutionary bursts

description: We lack a comprehensive understanding of evolutionary pattern and process
 because short-term and long-term data have rarely been combined into a
 single analytical framework. Here we test alternative models of phenotypic
 evolution using a dataset of unprecedented size and temporal span (nearly
 8,000 data points). The data are body-size measurements taken from
 historical studies, the fossil record, and among-species comparative data
 representing mammals, squamates, and birds. By analyzing this unusually
 large dataset, we identify stochastic models that can explain evolutionary
 patterns on both short and long timescales and reveal a remarkably
 consistent pattern in the timing of divergence across taxonomic groups.
 Even though rapid, short-term evolution often occurs in intervals shorter
 than 1 Myr, the changes are constrained and do not accumulate over time.
 Over longer intervals (1–360 Myr), this pattern of bounded evolution
 yields to a pattern of increasing divergence with time. The bestfitting
 model to explain this pattern is a model that combines rare but
 substantial bursts of phenotypic change with bounded fluctuations on
 shorter timescales. We suggest that these rare bursts reflect permanent
 changes in adaptive zones, whereas the short-term fluctuations represent
 local variations in niche optima due to restricted environmental variation
 within a stable adaptive zone.
description: Microevolutionary and
 Paleontological divergence databaseEvolutionary divergence
 database compiled from the microevolutionary rate database of Hendry et
 al. 2008, the evolutionary rate database of Gingerich 2001 and other
 sources.Dryad7.csvComparative phylogenetic dataNode-averaged phylogenetic comparative data of body size divergencePhylogeniesbynode.csv
DOI: 10.5061/dryad.ts7sm
title: Data from: Assessing the role of non-cotton refuges in delaying Helicoverpa armigera resistance to Bt cotton in West Africa

description: Non-cotton host plants without Bacillus thuringiensis (Bt) toxins can
 provide refuges that delay resistance to Bt cotton in polyphagous insect
 pests. It has proven difficult, however, to determine the effective
 contribution of such refuges and their role in delaying resistance
 evolution. Here we used biogeochemical markers to quantify movement of
 Helicoverpa armigera moths from non-cotton hosts to cotton fields in three
 agricultural landscapes of the West African cotton belt (Cameroon) where
 Bt cotton was absent. We show that the contribution of non-cotton hosts as
 a source of moths was spatially and temporally variable, but at least
 equivalent to a 7.5% sprayed refuge of non-Bt cotton. Simulation models
 incorporating H. armigera biological parameters, however, indicate that
 planting non-Bt cotton refuges may be needed to significantly delay
 resistance to cotton producing the toxins Cry1Ac and Cry2Ab. Specifically,
 when the concentration of one toxin (here Cry1Ac) declined seasonally,
 resistance to Bt cotton often occurred rapidly in simulations where
 refuges of non-Bt cotton were rare and resistance to Cry2Ab was non
 recessive, because resistance was essentially driven by one toxin (here
 Cry2Ab). The use of biogeochemical markers to quantify insect movement can
 provide a valuable tool to evaluate the role of non-cotton refuges in
 delaying the evolution of H. armigera resistance to Bt cotton.
description: Supplementary raw
 dataSupplementary tables
 (1-5) and figure (1)
DOI: 10.5061/dryad.mv2bv
title: Data from: Evolutionary significance of the invasion of introduced populations into the native range of Meconopsis cambrica

description: The long history of the deliberate or accidental, human-mediated dispersal
 of flowering plants has led to the introduction of foreign genotypes of
 many species into areas of Europe hitherto occupied by potentially
 distinct native populations. Studies of the genetic and evolutionary
 consequences of such changes are handicapped by the difficulty of
 identifying the surviving native populations of many species in the
 absence of clear morphological differences. We investigated the
 relationship between putative native and introduced populations of the
 herbaceous perennial Meconopsis cambrica (Papaveraceae), as the isolated
 native populations of this species can be identified by historical and
 ecological evidence. In Britain the species is scarce and declining as a
 native but has become increasingly frequent in recent decades as a garden
 escape. Native populations from Spain and France were compared to native
 and introduced British populations using ITS and cpDNA sequences and
 AFLPs. Ten of the twelve British populations could be unambiguously
 assigned to native or introduced groups using cpDNA and AFLPs. The
 introduced plants appear to originate from the central and eastern
 Pyrenees rather than from native British sites. Two populations (including
 one previously considered native) cannot be classified unambiguously.
 There is unequivocal evidence for unidirectional gene-flow from native
 plants into two of the introduced populations and possible evidence for
 hybridization in three other sites (two native). The absence of biological
 barriers to hybridization suggests that the native and introduced gene
 pools of M. cambrica in Britain might eventually merge.
description: Meconopsis_cambrica_AFLP
DOI: 10.5061/dryad.t46v2
title: Data from: The effect of deleterious mutations and age on recombination in Drosophila melanogaster

description: At the population level, recombination mediates the efficiency with which
 selection can eliminate deleterious mutations. At the individual level,
 deleterious alleles may influence recombination, which would change the
 rate at which linkage disequilibrium is eroded and thereby alter the
 efficiency with which deleterious alleles are purged. Here we test whether
 the presence of a deleterious allele on one autosome affects recombination
 on another autosome. We find that deleterious alleles not only alter the
 rate but also the pattern of recombination. However, there is little
 support that different deleterious alleles affect recombination in a
 consistent manner. Because we have detailed information on individual
 females across their life times, we are able to examine how recombination
 patterns change with age and find that these patterns are also affected by
 the presence of deleterious alleles. The differences among genotypes or
 among age classes is large enough to add substantial noise to genetic
 mapping experiments that do not consider these sources of variation.
description: C2TotalsDataForArchiving"C2" data, lifetime offspring productionC3TotalsDataForArchiving"C3" data, lifetime total offspring productionC2DataByAgeForArchiving"C2" data, offspring produced by ageC3DataByAgeForArchiving"C3" data, offspring produced by age
DOI: 10.15468/dl.jbwyez
title: Occurrence Download

description: A dataset containing 18515 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus armeniaca",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18515 records from 374 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001712-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.b13j1
title: Data from: The influence of Late Quaternary climate-change velocity on species endemism

description: The effects of climate change on biodiversity should depend in part on
 climate displacement rate (climate-change velocity) and its interaction
 with species’ capacity to migrate. We estimated Late Quaternary
 glacial-interglacial climate-change velocity by integrating macroclimatic
 shifts since the Last Glacial Maximum with topoclimatic gradients.
 Globally, areas with high velocities were associated with marked absences
 of small-ranged amphibians, mammals and birds. The association between
 endemism and velocity was weakest in the highly vagile birds and strongest
 in the weakly dispersing amphibians, linking dispersal ability to
 extinction risk due to climate change. High velocity was also associated
 with low endemism at regional scales, especially in wet and aseasonal
 regions, where conditions otherwise favor high richness. Overall, we show
 that low-velocity areas are essential refuges for Earth’s many
 small-ranged species.
description: Rasters associated with
 Sandel et al. 2011This is the file
 originally uploaded by the author.Dryad Archive
 Files.zipRasters associated with
 Sandel et al. 2011 -- convertedThis version of the data
 file has undergone format conversion by a Dryad
 curator.Dryad_Archive_Files_converted.zip
DOI: 10.5061/dryad.95vt1
title: Data from: Population divergence along lines of genetic variance and covariance in the invasive plant Lythrum salicaria in eastern North America

description: Evolution during biological invasion may occur over contemporary
 timescales, but the rate of evolutionary change may be inhibited by a lack
 of standing genetic variation for ecologically relevant traits and by
 fitness trade-offs among them. The extent to which these genetic
 constraints limit the evolution of local adaptation during biological
 invasion has rarely been examined. To investigate genetic constraints on
 life-history traits, we measured standing genetic variance and covariance
 in 20 populations of the invasive plant purple loosestrife (Lythrum
 salicaria) sampled along a latitudinal climatic gradient in eastern North
 America and grown under uniform conditions in a glasshouse. Genetic
 variances within and among populations were significant for all traits;
 however, strong intercorrelations among measurements of seedling growth
 rate, time to reproductive maturity and adult size suggested that fitness
 trade-offs have constrained population divergence. Evidence to support
 this hypothesis was obtained from the genetic variance–covariance matrix
 (G) and the matrix of (co)variance among population means (D), which were
 79.8% (95% C.I. 77.7–82.9%) similar. These results suggest that population
 divergence during invasive spread of L. salicaria in eastern North America
 has been constrained by strong genetic correlations among life-history
 traits, despite large amounts of standing genetic variation for individual
 traits.
description: ReMLGD_20100630_UNCSAS Analysis. Note that you will have to add an import statement to import AllDataFixed.txt to run the script.AllDataFixedData file. Note that "Table" is a replicated Block.ReMLGD_OutputOutput from the ReMLGD_UNC file, run in SASBlowsBootGD_NULLR code for the null bootstrap test
DOI: 10.82294/dvnldsy3f
title: Entrevistas semiestructuradas. Territorio: Cali. Sector: Cultura. Año: 2023

description: A partir de un proceso de acompañamiento situado, se recopilaron testimonios por medio de entrevistas semiestructuradas durante el año 2023, las cuales indagaron sobre 4 categorías que describían la práctica en educación artística de docentes, cultores, sabedores de la enseñanza del arte, que hacían parte de los programas de formación en educación artística y cultural del sector Cultura (educación informal) en la ciudad de Cali.
DOI: 10.5061/dryad.ng09t
title: Data from: Selection and genomic differentiation during ecological speciation: isolating the contributions of host association via a comparative genome scan of Neochlamisus bebbianae leaf beetles

description: This study uses a comparative genome scan to evaluate the contributions of
 host plant related divergent selection to genetic differentiation and
 ecological speciation in maple- and willow-associated populations of
 Neochlamisus bebbianae leaf beetles. For each of 15 pairwise population
 comparisons, we identified "outlier loci" whose strong
 differentiation putatively reflects divergent selection. Of 447 AFLP loci,
 15% were outliers across multiple population comparisons, and low linkage
 disequilibrium indicated that these outliers derived from multiple regions
 of the genome. Outliers were further classified as
 "host-specific" if repeatedly observed in
 "different-host" population comparisons but never in
 "same-host" comparisons. Outliers exhibiting the opposite
 pattern were analogously classified as "host-independent."
 Host-specific outliers represented 5% of all loci and were more frequent
 than host-independent outliers, thus revealing a large role for
 host-adaptation in population genomic differentiation. Evidence that
 host-related selection can promote divergence despite gene flow was
 provided by population trees. These were structured by host-association
 when datasets included host-specific outliers, but not when based on
 neutral loci, which united sympatric populations. Lastly, three
 host-specific outliers were highly differentiated in all nine
 different-host comparisons. Because host-adaptation promotes reproductive
 isolation in these beetles, these loci provide promising candidate gene
 regions for future molecular studies of ecological speciation.
description: HPcorrsummary01corrsummary
DOI: 10.5061/dryad.ck8pg
title: Data from: Soil sampling and isolation of extracellular DNA from large amount of starting material suitable for metabarcoding studies

description: DNA metabarcoding corresponds to the DNA-based identification of multiple
 species from a single complex and degraded environmental sample. We
 developed new sampling and extraction protocols suitable for DNA
 metabarcoding analyses, targeting soil extracellular DNA. The proposed
 sampling protocol has been designed to reduce as much as possible the
 influence of the local heterogeneity by processing large amount of soil,
 resulting from the mixing of many different cores. The DNA extraction is
 based on the use of saturated phosphate buffer. The sampling and
 extraction protocols were validated first by analyzing plant DNA from a
 set of 12 plots corresponding to four plant communities in alpine meadows,
 and second by conducting pilot experiments on fungi and earthworms. The
 results of the validation experiments clearly demonstrated that sound
 biological information can be retrieved when following these sampling and
 extraction procedures. Such a protocol can be implemented at any time of
 the year without any preliminary knowledge of specific types of organisms
 during the sampling. It offers the opportunity to analyze all groups of
 organisms using a single sampling/extraction procedure and opens the
 possibility to fully standardize biodiversity surveys.
description: Sequence_dataMEC-11-0815_sequence_data.fastamatrixMEC-11-0815_matrix.txt
DOI: 10.5061/dryad.rj28ck8g
title: Data from: Abundance and extinction in Ordovician-Silurian brachiopods, Cincinnati Arch, Ohio and Kentucky

description: A basic hypothesis in extinction theory predicts that more abundant taxa
 have an evolutionary advantage over less abundant taxa, which should
 manifest as increased survivorship during major extinction events and
 longer fossil-record durations. Despite this, various paleontologic
 studies have found conflicting patterns, indicating a more complex
 relationship between abundance and extinction in the geologic past. This
 study tests the relationship between abundance and extinction among
 brachiopod genera within seven third-order depositional sequences spanning
 the Late Ordovician to Early Silurian (Katian-Aeronian) of the Cincinnati
 Arch, USA. Contrary to predictions, abundance is not positively correlated
 with duration in this study. Abundance and duration range from strongly
 negatively correlated to uncorrelated depending on the spatial scale of
 analysis and the geologic intervals included, but never indicate that
 abundance is an evolutionary advantage. In contrast, abundance was an
 advantageous trait prior to the Ordovician/Silurian extinction, and
 brachiopods with higher abundances were more likely to survive the event
 than less abundant brachiopods. While this result is in keeping with
 common models of extinction, it has not been observed previously at a mass
 extinction boundary. This may be further evidence that the
 Ordovician/Silurian extinction was not accompanied by a shift in the
 macroevolutionary selectivity regime.
description: C1See ReadMe
 FileC2See ReadMe
 FileC3See ReadMe
 FileC4See ReadMe
 FileC5See ReadMe
 FileC6See ReadMe
 FileB1See
 Readme
DOI: 10.5281/zenodo.18391794
title: Electron density and molecular electrostatic potential of CO molecule
DOI: 10.15468/dl.y3g55x
title: Occurrence Download

description: A dataset containing 318590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Galeopsis tetrahit",
 "Year 1980-2026"
 ]
}

 The dataset includes 318590 records from 1355 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001667-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pdmq7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Akysis pictus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049469-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29994154
title: Survey Obesity and Cancer 1

description: Globally, the incidence and severity of obesity continue to increase. It is well established that obesity is associated with an elevated risk of multiple diseases, including 13 types of cancer. This study demonstrates that knowledge among health care providers is incomplete, especially on obesity-related cancer risks outside their respective working fields. Patients are poorly aware of obesity-related cancer risks. Training programs and normalization of the discussion around obesity with a patient-centered approach are identified as approaches that may help to bridge these gaps.
DOI: 10.6084/m9.figshare.29994154.v1
title: Survey Obesity and Cancer 1

description: Globally, the incidence and severity of obesity continue to increase. It is well established that obesity is associated with an elevated risk of multiple diseases, including 13 types of cancer. This study demonstrates that knowledge among health care providers is incomplete, especially on obesity-related cancer risks outside their respective working fields. Patients are poorly aware of obesity-related cancer risks. Training programs and normalization of the discussion around obesity with a patient-centered approach are identified as approaches that may help to bridge these gaps.
DOI: 10.6084/m9.figshare.29109429
title: Supplementary Material S2 from The “silent” half: diversity, function, and the critical knowledge gap on female frog vocalizations

description: Complete dataset of female call instances and their respective references.
DOI: 10.6084/m9.figshare.29109429.v1
title: Supplementary Material S2 from The “silent” half: diversity, function, and the critical knowledge gap on female frog vocalizations

description: Complete dataset of female call instances and their respective references.