cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25381/cput.21543033.v1
title: Optimisation of hydrodynamic cavitation as an advanced oxidation option for removal of persistent contaminants in wastewater

description: 2019FEREC-STD-77 <br> Calibration Curve for orange II dye. <br> Perfluorooctanoic acid (PFOA) data measurement. <br> Effect of different cavitating devices on dye decolouration in the HC pilot plant (Fixed parameters: Orange II concentration 20 ppm, 10 L solution, solution pH 2, 60 min experiment, 10 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Effect of orifice size and Catalyst (Iron sulphate) and/or hydrogen peroxide on dye decolouration (Fixed parameters: Orange II concentration 20 ppm, 10 L solution, solution pH 2, 60 min experiment, 10 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Effect of different cavitating devices on dye decolouration in the HC pilot plant (Fixed parameters: Orange II concentration 20 ppm, 10 L solution, solution pH 2, 10 min experiment, 2 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Effect of an orifice, a venturi and the combination of both cavitating devices on dye decolouration in HC pilot plant (Fixed parameters: Orange II concentration 20 ppm, 10 L solution, solution pH 2, 10 min experiment, 2 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Chemical oxygen demand for perluorooctanoic acid (Fixed parameters: Orifice 2 mm hole,PFOA concentration 10 ppm, 10 L solution, solution pH 2, 10 min experiment, 2 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Zero, first and second rate reaction plot for removal of orange II ((Fixed parameters: Orifice 2 mm hole, orange II concentration 20 ppm, 10 L solution, solution pH 2, 10 min experiment, 2 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature). <br> Temperature rise profile ((Fixed parameters: Orifice 2 mm hole, orange II concentration 20 ppm, 10 L solution, solution pH 2, 60 min experiment, 10 min sampling interval, 300 KPa inlet pressure, 22 degree celcuis starting temperature)
DOI: 10.5517/ccdc.csd.cc2cmc0d
title: CCDC 2193343: Experimental Crystal Structure Determination

description: Related Article: Michaela Černá, John A. Seed, Sara Garrido Fernandez, Michael T. Janicke, Brian L. Scott, George F. S. Whitehead, Andrew J. Gaunt, Conrad A. P. Goodwin|2022|Chem.Commun.|58|13278|doi:10.1039/D2CC04803E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.arjuby
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query: { "and" : [ "DatasetKey is NZ National Vegetation Survey occurrence data", "HasGeospatialIssue is false", "Country is New Zealand", "Modified is 2022-10" ] } The dataset includes 0 records from 0 constituent datasets:
DOI: 10.5517/ccdc.csd.cc2cpzqs
title: CCDC 2195876: Experimental Crystal Structure Determination

description: Related Article: Thanh Binh Nguyen, Pascal Retailleau|2022|Chem.Commun.|58|13333|doi:10.1039/D2CC05539B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.48366/r262162
title: Machine learning methods for transport mode

description: Comparison that classify the transport mode and the characteristics of their machine learning methods.
DOI: 10.5517/ccdc.csd.cc2c3wt6
title: CCDC 2178488: Experimental Crystal Structure Determination

description: Related Article: Bei-Dou Liang, Chang-Chun Fan, Cheng-Dong Liu, Chao-Yang Chai, Xiang-Bin Han, Wen Zhang|2022|Nat.Commun.|13|6599|doi:10.1038/s41467-022-34356-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c3wv7
title: CCDC 2178489: Experimental Crystal Structure Determination

description: Related Article: Bei-Dou Liang, Chang-Chun Fan, Cheng-Dong Liu, Chao-Yang Chai, Xiang-Bin Han, Wen Zhang|2022|Nat.Commun.|13|6599|doi:10.1038/s41467-022-34356-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c3ws5
title: CCDC 2178487: Experimental Crystal Structure Determination

description: Related Article: Bei-Dou Liang, Chang-Chun Fan, Cheng-Dong Liu, Chao-Yang Chai, Xiang-Bin Han, Wen Zhang|2022|Nat.Commun.|13|6599|doi:10.1038/s41467-022-34356-9
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cxgc4
title: CCDC 2202096: Experimental Crystal Structure Determination

description: Related Article: Youjung Byun, Kyeongwon Moon, Jihye Park, Prithwish Ghosh, Neeraj Kumar Mishra, In Su Kim|2022|Org.Lett.|24|8578|doi:10.1021/acs.orglett.2c03677
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25921/ryax-b308
title: ES60 Water Column Sonar Data Collected During AI04GL
DOI: 10.6084/m9.figshare.21657773
title: btc.csv

description: BTC Dataset 2021-Jan to 2022-Dec
DOI: 10.6084/m9.figshare.21656042
title: AA-Pruebadeposito-AAP.xlsx

description: Evolución de la población y el número de usuarios de la biblioteca del pueblo XYZ desde 2010 a 2021.
DOI: 10.6084/m9.figshare.21608445
title: Supplementary Table 1: Chemical composition of the diets used in this study.

description: Chemical composition of the diets used in this study.
DOI: 10.34740/kaggle/dsv/4634032
title: BBC News
DOI: 10.6084/m9.figshare.18264890.v2
title: Proteomic deconvolution reveals distinct immune cells in different body sites in SARS-Cov-2 positive individuals

description: Severe acute respiratory syndrome <em>coronavirus 2<b> (</b></em>SARS-CoV-2) continues to be a significant public health challenge globally. SARS-CoV-2 is a novel virus, and what constitutes immunological responses in different human body sites in infected individuals is yet to be presented. This study set to determine the various immune cell fractions in gargle solution, bronchoalveolar lavage fluid, nasopharyngeal, and urine samples post-SARS-CoV-2 infection in humans. The data in this repository supports the findings in the above mentioned topic.
DOI: 10.6084/m9.figshare.19517041.v6
title: Databset for Efficient 3-D forward modeling and mixed norm inversion of the vertical gravity gradient with application to the Vinton salt dome

description: Inversion of the gravity gradient data is widely adopted to construct 3-D density models. However, this inversion usually suffers from non-uniqueness and has a limited resolution in depth. This study introduces an effective inversion method for interpreting gravity gradient data based on the mixed L1 and L2 norm regularization. We also apply an efficient forward modeling algorithm to the inversion, which has many time-consuming iterations. Equivalence relations in the sensitivity matrix are employed to reduce the storage and computation time. In addition, a 2-D discrete convolution algorithm is used to reduce the repetitive calculation in the forward modeling. The numerical examples demonstrate that the computational efficiency is increased by about three orders of magnitude compared with the traditional forward method. Furthermore, compared to traditional single-norm inversion, the vertical gradient inversion with the mixed L1 and L2 norm regularization has a higher depth resolution. Finally, we apply the method to the inversion of the airborne gravity gradiometry data over the Vinton Dome, southern Louisiana.
DOI: 10.6084/m9.figshare.19517041
title: Databset for Efficient 3-D forward modeling and mixed norm inversion of the gravity gradients with application to the Vinton salt dome

description: Inversion of the gravity gradient data is widely adopted to construct 3-D density models. However, this inversion usually suffers from non-uniqueness and has a limited resolution in depth. This study introduces an effective inversion method for interpreting gravity gradient data based on the mixed L1 and L2 norm regularization. We also apply an efficient forward modeling algorithm to the inversion, which has many time-consuming iterations. Equivalence relations in the sensitivity matrix are employed to reduce the storage and computation time. In addition, a 2-D discrete convolution algorithm is used to reduce the repetitive calculation in the forward modeling. The numerical examples demonstrate that the computational efficiency is increased by about three orders of magnitude compared with the traditional forward method. Furthermore, compared to traditional single-norm inversion, the vertical gradient inversion with the mixed L1 and L2 norm regularization has a higher depth resolution. Finally, we apply the method to the inversion of the airborne gravity gradiometry data over the Vinton Dome, southern Louisiana.
DOI: 10.6084/m9.figshare.18264890
title: Proteomic deconvolution reveals distinct immune cells in different body sites in SARS-Cov-2 positive individuals

description: Severe acute respiratory syndrome <em>coronavirus 2<b> (</b></em>SARS-CoV-2) continues to be a significant public health challenge globally. SARS-CoV-2 is a novel virus, and what constitutes immunological responses in different human body sites in infected individuals is yet to be presented. This study set to determine the various immune cell fractions in gargle solution, bronchoalveolar lavage fluid, nasopharyngeal, and urine samples post-SARS-CoV-2 infection in humans. The data in this repository supports the findings in the above mentioned topic.
DOI: 10.18434/mds2-2755
title: FCpy: Feldman-Cousins Confidence Interval Calculator
DOI: 10.25442/hku.21433548
title: Whole-genome sequencing and comprehensive molecular profiling identify new driver mutations in gastric cancer

description: Gastric cancer is a heterogeneous disease with diverse molecular and histological subtypes. We performed whole-genome sequencing in 100 tumor-normal pairs, along with DNA copy number, gene expression and methylation profiling, for integrative genomic analysis. We found subtype-specific genetic and epigenetic perturbations and unique mutational signatures. We identified previously known (<em>TP53</em>, <em>ARID1A</em> and <em>CDH1</em>) and new (<em>MUC6</em>, <em>CTNNA2</em>, <em>GLI3</em>, <em>RNF43</em> and others) significantly mutated driver genes. Specifically, we found <em>RHOA</em> mutations in 14.3% of diffuse-type tumors but not in intestinal-type tumors (<em>P</em> &lt; 0.001). The mutations clustered in recurrent hotspots affecting functional domains and caused defective RHOA signaling, promoting escape from anoikis in organoid cultures. The top perturbed pathways in gastric cancer included adherens junction and focal adhesion, in which <em>RHOA</em> and other mutated genes we identified participate as key players. These findings illustrate a multidimensional and comprehensive genomic landscape that highlights the molecular complexity of gastric cancer and provides a road map to facilitate genome-guided personalized therapy.
DOI: 10.25442/hku.21433548.v2
title: Whole-genome sequencing identified somatic mutations in 100 gastric cancers

description: This dataset contains list of somatic mutations identified by whole-genome sequencing in 100 gastric cancers. Whole genome sequencing data was generated from gastric tumor frozen tissues and blood leukocyte DNA. Whole-genome sequencing was performed by Illumina Inc (San Diego, CA). Libraries were constructed with ~300bp insert length and paired-end 100bp reads were sequenced on Illumina HiSeq2000. Bam files have been deposited in the European Genome-phenome Archive with the study ID EGAS00001000597.
DOI: 10.18434/mds2-2819
title: X-ray Properties Database in SQLite Format
DOI: 10.6084/m9.figshare.21097804
title: Northern elephant seal inner and outer blubber transcriptome assembly

description: Blubber samples were collected from 3 female juvenile northern elephant seals (Mirounga angustirostris) in January 2020. Samples were divided into 3 similarly-sized pieces; RNA was extracted from the outermost and innermost blubber portions using Qiagen RNeasy Lipid Mini Kit (RIN: 7.7-8.8). Strand-specific 150-bp paired-end cDNA library preparation and NovaSeq S4 sequencing were conducted by QB3 Genomics, UC Berkeley, Berkeley, CA (RRID:SCR_022170). Raw data were uploaded to NCBI Sequence Read Archive (BioProject ID: PRJNA874098). Transcriptome assembly, annotation, and transcript abundance estimation were conducted using the Extreme Science and Engineering Discovery Environment (XSEDE) Bridges2 Large High Performance Computing Cluster at the Pittsburg Supercomputing Center (allocation TG-IBN150010; Towns et al., 2014). The transcriptome was assembled de novo using the default Trinity v2.11.0 pipeline with no modifications (Haas et al., 2013). Assembled transcripts were annotated by blastx against the UniProt Caniformia database (Taxonomy ID: 379584, 549,465 sequences, downloaded 8/10/2021) using Diamond v0.8.31 run in ultra-sensitive mode (k = 1, e-value = 1e-3; Buchfink et al., 2015).
DOI: 10.7910/dvn/azyfgc
title: Korneyev, A. V. Data base “The U.S. major economic indicators in 1950–1995” / A. V. Korneyev ; Ed. by V. I. Sokolov. – [2nd edition, revised and enlarged]. – Moscow : The Institute for the US and Canadian Studies of the Russian Academy of Sciences, 1997. – 39 p. – Text. – (Econometric database, in Russian).

description: The database contains continuous chronological series of the main indicators for development of the US economy in 1950-1995. It includes the values of GNP and GDP at current and fixed prices, price deflators, shares of various industry groups in the structure of domestically produced products, indicators of growth for the total national income, the cost volumes of commodity exports and imports, population, indicators of general and sectoral employment, unemployment, basic indices of the value for the output of intermediate and final products of the branches in material production, the current volumes of sectoral capital investments, basic indices of production costs and consumer prices, as well as indicators of the US national wealth. Particular attention was given to inflation rates, the growth of military spending, the dynamics of public debt and such derived socio-economic indicators as the shares of total national product, income and wealth per capita. In connection with the current changes in the methods of calculating the American system of national accounts (NIPA), introduced by the Bureau of Economic Analysis of the US Department of Commerce, some number series have been updated according to the Economic Report of the President in 1997. All the above series of indicators are verified with primary sources and provided with reference linear charts of statistical trends. The basis for compiling the database was the official reference publications of the US federal departments, as well as statistical materials accumulated and processed in the Section of Economic Databases of the Institute for the USA and Canada at the Russian Academy of Sciences in 1985-1997.
DOI: 10.7910/dvn/6gjoeb
title: Causes and visual outcomes in scleritis

description: Causes and visual outcomes in scleritis.
DOI: 10.34740/kaggle/dsv/4634185
title: OntoUML/UFO Catalog
DOI: 10.13140/rg.2.2.28773.88805
title: El impacto ambiental de las empresas aguacateras en Ciudad Guzmán y sus implicaciones en la salud por los agroquímicos
DOI: 10.6084/m9.figshare.17143865
title: Database, online items and scripts from ‘InvitroSPI and a large database of proteasome-generated spliced and non-spliced peptides’

description: Manuscript abstract Noncanonical epitopes presented by Human Leucocyte Antigen class I (HLA-I) complexes to CD8+ T cells attracted the spotlight in the research of novel immunotherapies against cancer, infection and autoimmunity. Proteasomes, which are the main producers of HLA-I-bound antigenic peptides, can catalyze both peptide hydrolysis and peptide splicing. The prediction of proteasome-generated spliced peptides is an objective that still requires a reliable (and large) database of non-spliced and spliced peptides produced by these proteases. Here, we present an extended database of proteasome-generated spliced and non-spliced peptides, which was obtained by analyzing <em>in vitro</em> digestions of 80 unique synthetic polypeptide substrates, measured by different mass spectrometers. Peptides were identified through invitroSPI method, which was validated through <em>in silico</em> and <em>in vitro</em> strategies. The peptide product database contains 16,631 unique peptide products (5,493 non-spliced, 6,453 <em>cis</em>-spliced and 4,685 <em>trans</em>-spliced peptide products), and a substrate sequence variety that is a valuable source for predictors of proteasome-catalyzed peptide hydrolysis and splicing. Potential artefacts and skewed results due to different identification and analysis strategies are discussed. <br> File description <br> PBdataset-search-results.zip Mascot search results for the PB dataset, used for invitroSPI analysis of PB dataset. Contains a full list of all PSMs suggested by Mascot. <br> ProteasomeDB.csv Large database of proteasome-generated spliced and non-spliced peptides, generated by invitroSPI analysis of 80 synthetic polypeptide substrates. <br> databases.zip Custom databases used for search of in vitro digestion MS measurements. They contain all theoretically possible spliced and non-spliced peptides that could be derived from a given polypeptide. <br> analysis-scripts-figshare.zip Scripts used for the analysis presented in the corresponding manuscript. <br> invitroPB_scripts.zip Scripts for the invitroPB method. <br> Online-Table 1 Technical details of all 80 synthetic substrates and their measurement. <br> Online-Table 2 PSMs identified in the gp100 Fusion dataset <br> Online-Table 3 PSMs identified in the PB dataset <br> Online-Figure 1 Comparison of measured MS2 spectra of a representative pool of identified non-spliced and spliced peptide products and synthetic peptides derived from the gp100 dataset <br> Online-Figure 2 Comparison of measured and predicted MS2 spectra of non-spliced and spliced peptides identified by invitroSPI method in the PB dataset <br> Online-Figure 3 Comparison of measured and predicted MS2 spectra of non-spliced and spliced peptides identified by invitroPB method in the PB dataset
DOI: 10.21954/ou.rd.14377328
title: Covid Chronicles: Lived Experience Activism – Sisters not Strangers: a Call to Action

description: The writer of this piece prefers to stay anonymous, but she wanted to write about the liberating effect of becoming an activist for asylum seekers. Despite 18 years separated from her family and children, she remains without secure status and dependent on others. Despite everything she is an inspirational woman. This is her introduction to her experience of joining the Sisters not Strangers Coalition. <br> ----- This material is part of the Covid Chronicles from the Margins project, funded by The Open University and The Hague. The project aims to highlight the impact of the pandemic on refugees, asylum seekers & undocumented migrants. <br> This item can be found on our website.
DOI: 10.5519/qd.2y53a5l2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (26114 records)
DOI: 10.5519/qd.waszyj1k
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (490 records)
DOI: 10.6084/m9.figshare.21656132
title: Artigos incluídos (referências e metadados) / Articles included (references and metadata)

description: Os metadados e referências apresentados se referem aos artigos incluídos na revisão sistemática de escopo: "Intervenções para aumentar a criatividade no Século XXI". <br> The metadata and references presented refer to the articles included in the systematic scoping review: "Interventions to Enhance Creativity in the 21st Century".
DOI: 10.6084/m9.figshare.21664022
title: Menelik whole head and shoulder mesh format (SAB)

description: The Menelik head and shoulder mesh model in SAB file format.