cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24559999.v1
title: Mass spec raw data.xlsx

description: Agilent 1260 Infinity nHPLC stack and Thermo Orbitrap Velos Pro hybrid mass spectrometer were used for analysis of 8-µl samples with a C-18 column (75 μm x 15 cm; 300 Å; 5 μm; Phenomenex). All data were acquired in collision-induced dissociation mode. The phase A was 0.1% FA in ddH2O and phase B was 0.1% formic acid (FA) in 15% ddH2O/85% acetonitrile). The mobile phase gradient was: 10 min at 2% phase B, 90 min at 5-40% phase B, 5 min at 70% phase B and 10 min at 0% phase B. The MS detection included a full scan (m/z 300 -1200) with resolution at 60k and data-dependent MS2 scans on the top abundant ions (15 ions). The MS data files were converted to MzXML using ReAdW (v. 3.5.1). MzXML2 Search was used to create a Mascot generic format file. Data were analyzed using the SEQUEST engine and searches were performed using the Uniref100 database. The peptide ID lists were then further analyzed by Scaffold viewer. The mass spectrometry peptide identifications were filtered by Scaffold. In short, protein probabilities were set to ≥0.99 with false discovery rate &lt;1% cutoff, minimum two peptides assigned per protein, and individual peptide probabilities were ≥0.8. Quantification across experiments was based on normalized spectral counting between samples for MS spectra assigned to each protein.
DOI: 10.6084/m9.figshare.24805467.v1
title: Data 1.csv

description: Signal intensity curves of different agents applied to pig skin at 1.2 mm depth; (a) and (b)： D-fructose and sucrose mixed with DMSO of different concentrations, respectively
DOI: 10.6084/m9.figshare.5267674.v1
title: TAVOLE DI CONCORDANZA, di Guglielmo Bartoletti

description: Tavole di concordanza dell'Archivio della Libreria privata del Marchese Suddecano Gabriello Riccardi<br>(Appendice all'interno del volume: <b>Guglielmo Bartoletti, <i>La Libreria privata del Marchese Suddecano Gabriello Riccardi. Il fondo manoscritti</i>, Firenze, Firenze University Press, 2017</b>)<br><i><b>Legenda dell’inventario topografico</b></i><b>Collocazione</b>: si tratta di due numeri romani indicanti rispettivamente lo scaffale e il palchetto della segnatura della Libreria di Gabriello.<b>Numero: </b>è il terzo elemento della segnatura della Libreria di Gabriello, costituito da un numero arabo a correre dal 1 a 1239; seguono ad esso dei numeri convenzionali che indicano le successive tappe di incremento di tale Libreria.<b>bis</b>: si tratta dell’indicazione di una singola parte del manoscritto, nel caso in cui manoscritti di provenienza diversa fossero stati rilegati in unico volume da Gabriello.<b>Titolo</b>: è l’espressione che troviamo sul dorso originale per indicare il contenuto del volume; nel caso frequente in cui sia andato perduto, lo abbiamo sostituito, riadattandolo in parte, con l’espressione usata dall’Inventario e stima del 1810 per descrivere il medesimo manoscritto.<b>O. D. R. T</b>: si tratta della segnalazione che l’ultimo numero della segnatura di Gabriello, quello arabo, è riportato anche sul manoscritto stesso in varia forma: O = in forma originale; D = sul dorso; R = riportato da mano successiva; T = vi è rimasta solo una traccia.<b>Indici</b>: si tratta della persona che eventualmente redatto l’indice sul manoscritto stesso. Gabriello stesso o il Mehus.<b>Legatura</b>: è l’indicazione che si tratta di una legatura eseguita dal legatore di fiducia di Gabriello, Giuseppe Pagani; la sigla P indica che la legatura è attribuibile al Pagani per confronto, la sigla B significa che l’indicazione compare nella tesi di laurea di G. Bani.<b>Bullettone</b>: si indica quando il manoscritto è descritto nel catalogo alfabetico della Libreria di Gabriello, noto come “Bullettone”.<b>Mehus</b>: indica la presenza di quel manoscritto negli spogli del Mehus.<b>F/R</b>: indica che la segnatura di Gabriello è riportata, accanto alla nuova nelle illustrazioni di codici rispettivamente del Fontani e del Rigoli.<b>Provenienza</b>: sono riportate, quando individuate, le provenienze da cui Gabriello ha attinto per la costruzione della sua raccolta.<b>Ricc.</b>: è la segnatura attuale del manoscritto.<b>bis:</b> è l’indicazione della sezione cui ci si riferisce, nel caso di manoscritti compositi.<b>Osservazioni</b>: si tratta di espressioni molto concise con le quali si ritiene utile dare ulteriori informazioni o chiarimenti.
DOI: 10.15131/shef.data.3437426.v1
title: Interspeech 2016 - Experiment results for paper "Error correction in lightly supervised alignment of broadcast subtitles"

description: The files in the dataset correspond to results that have been generated for the Interspeech 2016 article: "Error correction in lightly supervised alignment of broadcast subtitles" DOI: 10.21437/Interspeech.2016-56.<br> <br> The files in the zip file are of two types:<br> - .ctm, which correspond to the output of the lightly supervised alignment system.<br> - .sys, which correspond to scoring of the lightly supervised alignment system and includes the overall F measure as well as the precision and recall of the overall system and of each individual show.<br> <br>The following is a description about the naming convention of the files:<br> <br>TableX-LineY: This is the alignment and scoring output corresponding to Line Y of Table X in the article.<br>TableX-LineY-[dev|eval]: This is the alignment and scoring output corresponding to Line Y of Table X for development (dev) or evaluation (eval) in the article.<br> <br> All two file types are standard outputs that are recognised by the speech technology community and can be opened using any text editor.
DOI: 10.17632/d2nwxn9w7k
title: soil detachment capacity

description: Vegetation restoration duration and erosion and deposition topography influence the soil detachment capacity (Dc) through changes in hydraulic conditions, soil properties and root traits. However, owing to its unique geological structure, the mechanism of soil detachment at erosion and deposition sites in karst trough valleys following the “Grain for Green” project remains unclear. Therefore, at erosion and deposition sites, we selected 5 years (A5) and 10 years (A10) of grassland for vegetation restoration as the research objects, whereas bare land was used as the control. The change mechanism of Dc was analyzed by conducting indoor scouring experiments at flow discharges of 60, 80, and 100 L·min−1. The results demonstrated that the water-stable aggregate (WSA), soil organic matter (SOM), root diameter (RD) and root volume density (RVD) of A10 were greater than those of A5, and these parameters at deposition site were greater than at erosion site. Except for the bedding slope of erosion site, Dc showed a significant decreasing trend as the duration of vegetation restoration increased. The average Dc of erosion site was 3.56 times greater than the Dc observed at the deposition site. Furthermore, stream power was the optimal hydraulic parameter for describing Dc in karst trough valley. The Dc at erosion and deposition sites exhibited a significantly negative correlation with BD, WSA, SOM, and RVD. Moreover, the vegetation restoration duration and topography had indirect effects on Dc. The primary drivers of variations in Dc were identified as soil properties at erosion site and hydraulic conditions at deposition site.
DOI: 10.6084/m9.figshare.20317185.v1
title: Becker et al. 2023

description: Data for manuscript under the title "Landscape-wide pulse events predict trait-based responses among wetland birds in perennial channels of a dryland wetland". Descriptions of covariates can be found in Table 3 of the manuscript.
DOI: 10.6084/m9.figshare.22110623.v1
title: Matrix of Specimens

description: Abundance data for specimens from samples.
DOI: 10.6084/m9.figshare.24998417.v1
title: Supplementary Material for: Diet Stimulated Marrow Adiposity Fails to Worsen Early, Age-Related Bone Loss

description: Introduction 
Longitudinal effect of diet-induced obesity on bone is uncertain. Prior work showed both no effect versus a decrement in bone density or quality when obesity begins prior to skeletal maturity. We aimed to quantify long-term effects of obesity on bone and bone marrow adipose tissue (BMAT) in adulthood.
Methods
Skeletally mature, female C57BL/6 mice (n=70) aged 12-weeks were randomly allocated to low-fat (LFD; 10%kcal fat; n=30) or high-fat (HFD; 60%kcal fat; n=30) diet, with analyses at 12,15,18 and 24-weeks (n=10/group). Tibial microarchitecture was analyzed by µCT, and volumetric BMAT was quantified via 9.4T MRI/advanced-image-analysis. Histomorphometry of adipocytes and osteoclasts, and qPCR were performed. 
Results
Body weight and visceral white adipose tissue accumulated in response to HFD started in adulthood. Trabecular bone parameters declined with advancing experimental age. BV/TV declined 22% in LFD (p=0.0001) and 17% in HFD (p=0.0022) by 24-weeks. HFD failed to appreciably alter BV/TV and had negligible impact on other microarchitecture parameters. Both dietary intervention and age accounted for variance in BMAT, with regional differences: distal femoral BMAT was more responsive to diet, while proximal femoral BMAT was more attenuated by age. BMAT increased 60% in the distal metaphysis in HFD at 18 and 24 weeks (p=0.0011). BMAT in the proximal femoral diaphysis, unchanged by diet, decreased 45% due to age (p=0.0002). Marrow adipocyte size via histomorphometry supported MRI quantification. Osteoclast number did not differ between groups. Tibial qPCR showed attenuation of some adipose, metabolism, and bone genes. A regulator of fatty-acid β-oxidation, Cytochrome C (CYCS), was 500% more abundant in HFD-bone (p&lt;0.0001; diet effect). CYCS also increased due to age, but to a lesser extent. HFD mildly increased OCN, TRAP, and SOST. 
Conclusions
Long-term high fat feeding after skeletal maturity, despite upregulation of visceral adiposity, body weight, and BMAT, failed to attenuate bone microarchitecture. In adulthood, we found aging to be a more potent regulator of microarchitecture than diet-induced obesity.
DOI: 10.6084/m9.figshare.28216079.v1
title: Supplemental materials_corrected_final.docx

description: Supplemental data for the JDS article<br>
DOI: 10.6084/m9.figshare.29072015.v1
title: 1.zip

description: seed dataset
DOI: 10.17632/3jwvmvmwpp
title: Quantum Unfolding: A program for unfolding electronic energy bands of materials

description: Abstract We present Quantum Unfolding, a Fortran90 program for unfolding first-principles electronic energy bands. It unfolds energy bands accurately by handling the Fourier components of Bloch wavefunctions, which are reconstructed from Wannier functions from Wannier90. Due to the wide application of Wannier90 package and the possibility of focusing only on the most important energy bands, the present code works very conveniently. Title of program: Quantum Unfolding Catalogue Id: AEVF_v1_0 Nature of problem The Brillouin zone of a supercell is smaller than that of a primary cell. It makes the supercell energy bands more crowded. The crowded energy bands are outright difficult, if not impossible, to be compared with experimental results directly. Besides, the intra-supercell translation symmetries are hidden in the supercell band structure calculations. In order to compare with experiments and catch the hidden symmetries, we have to unfold the supercell energy bands into the corresponding primary-ce ... Versions of this program held in the CPC repository in Mendeley Data AEVF_v1_0; Quantum Unfolding; 10.1016/j.cpc.2014.12.009 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.17632/dmd8t9kss4
title: Pericapsular Nerve Group Block for Analgesia of Positioning pain during Spinal Anesthesia in Hip Fracture Patients, a Randomized controlled Study

description: Proximal femur fractures are one of the commonest fractures especially in the elderly population. Early surgical fixation is the best analgesic for associated pain[1]. Spinal anesthesia has been favored by many anesthesiologists due to the simplicity of the technique, the better analgesic profile, and the lower incidence of complications like delirium and thromboembolic events[2–4]. However, severe pain, encountered during positioning for spinal anesthesia, can complicate the technique and worsen the patient experience. Different regional blocks were employed to facilitate patient positioning for spinal anesthesia including femoral nerve block (FNB), fascia iliaca compartment block (FICB), and lateral cutaneous nerve block (LCNB)[5–8]. Pericapsular nerve group (PENG) block is a recently regional technique based on blocking the articular branches to the hip joint with a single injection and is utilized for perioperative analgesia in hip surgery[9]. In our study, the PENG block will be conducted before patient transfer to the operating theater for spinal anesthesia. The primary outcome was the pain profile during positioning for the neuroaxial block. Secondary outcomes included the best angle obtained during patient positioning, time to CSF flow, patient experience (pain during positioning and sitting angle), and perioperative complications including quadratus muscle weakness, nausea, vomiting, shivering, and delirium.
DOI: 10.17632/fp4485njhw
title: Data for: A Rapid Analytical Method for the Specific Surface Area of Amorphous SiO2 based on X-Ray Diffraction

description: Here are the raw data in this study.
DOI: 10.17632/rjmc7rrvdx
title: Audio signals from stressed plants

description: Dataset Description
1. Plant Stress Sound Dataset (CSV Format): plant_stress_sound_dataset.csv
The plant_stress_sound_dataset.csv contains metadata for audio recordings of plant-emitted sounds under various stress conditions. Each row in the dataset represents an individual sound recording and includes details about the plant species, type of stress, environmental conditions, and additional relevant metadata for real-time monitoring. The dataset helps in labeling and correlating the recorded sound with the plant’s physiological state and environmental context.
Columns:
• Audio_File: The filename of the recorded plant sound (e.g., plant_drought_01.wav).
• Stress_Type: The type of stress experienced by the plant (e.g., Drought, Nutrient Deficiency, Mechanical Damage).
• Duration (s): The duration of the sound recording in seconds.
• Plant_Species: The species of plant being monitored (e.g., Tomato, Corn, Wheat).
• Temperature (°C): The environmental temperature during the recording.
• Humidity (%): The relative humidity in the environment.
• Soil_Moisture (%): The percentage of soil moisture, which is critical for understanding drought stress.
• Timestamp: The exact time and date when the recording was made.
• Location: Describes whether the sound was recorded in a controlled environment (e.g., Greenhouse) or an open agricultural field.
This dataset allows deep learning models to learn and classify different stress conditions based on the plant’s emitted sound and environmental factors.
2. Audio Folder: plant_sounds/
The plant_sounds folder contains the actual audio recordings of plant-emitted sounds. Each file is a .wav or .mp3 format, corresponding to entries in the plant_stress_sound_dataset.csv file. The recordings are labeled based on the type of stress (e.g., plant_drought_01.wav, plant_nutrient_02.wav), and they capture airborne sound emissions linked to different plant stressors like drought, nutrient deficiency, or mechanical damage.
Example Files:
• plant_drought_01.wav: A recording of a plant experiencing drought stress.
• plant_nutrient_02.wav: A recording of a plant suffering from nutrient deficiency.
• plant_damage_03.wav: A recording of a plant with mechanical damage.
These audio files serve as the input to the deep learning model for analyzing sound patterns and detecting stress in plants.
DOI: 10.17632/zs2vnf9692
title: FaceID-550

description: The demands and application of face recognition are growing quickly in recent years due to the development of advances technology. One of the most challenging tasks of face recognition is to be recognized the facial image with limited training samples (a few or single image per person). This real-world problem can be seen in access control, physical security and international border control. In order to provide a new benchmark facial dataset for this issue, the FACEID-550 dataset is constructed (the full dataset is available from: http://dx.doi.org/10.17632/zs2vnf9692.2). Itcontains total 11,550 color images (256 × 256 pixels) of 550 subjects. Each person has one ID photo and twenty daily (or selfie) photos.
DOI: 10.25573/data.11529915.v1
title: Cynomys gunnisoni VCF file

description: VCF file from: First genome sequence of the Gunnison’s prairie dog (Cynomys gunnisoni), a keystone species and player in the transmission of sylvatic plague
DOI: 10.6084/m9.figshare.20847366.v1
title: Interaction Effects between Online Reviews and Product Characteristics on Consumer’s Trust

description: ABSTRACT Objective: the present study analyzes the relationship between online reviews and consumer trust in online stores, considering the conjoint effects of the characteristics of online reviews and product offers in the social commerce context. Methods: the study is characterized as a laboratory experiment that simulated the environment of an online store considering different scenarios, totaling 602 cases for analysis. Results: the results indicate that the relationship established between the consumer and the reviewers moderates the relationship between reviews and trust, suggesting that positive and negative reviews from friends and acquaintances affect the consumer’s trust more than those reviews made from strangers. However, this effect is not always significant, depending on the price offered. Still, the type of the product moderates the effect of the online reviews on trust when the store displays higher prices than the competition. In such cases, the impact of reviews on trust is more intense in high-value product advertisements. Conclusions: the study can help managers and website developers create more appropriate processes and strategic alternatives in the social commerce context, based on a better understanding of the relationships among the variables studied in this research.
DOI: 10.6084/m9.figshare.27315837.v1
title: disdrometeor, anemometer and radar data of Pakhar

description: All the observational data(including disdrometers, anemometer at four altitudes from meteorological tower, and radar data) is available here
DOI: 10.6084/m9.figshare.28328726.v1
title: <b>F</b><b>locking and giant fluctuations in epithelial active solids</b>

description: The Matlab codes for analyzing the correlation functions, order parameters, etc., are included.The source data for reproducing the figures in the manuscript are included.
DOI: 10.6084/m9.figshare.28448375.v3
title: Dietary quercetin supplementation attenuates inflammatory damage via the PI3K/Akt-NF-κB signaling pathway in lamellar tissues of dairy cows with subclinical laminitis

description: This material is supplementary material to the article titled Quercetin Attenuates Inflammatory Damage in Lamellar Tissue of Dairy Cows with Laminitis through the PI3K/Akt-NF-κB Signaling Pathway.
DOI: 10.17608/k6.auckland.28899716.v4
title: Firm Specificity Estimation Data

description: This dataset comprises the public data utilized for estimating the specificity variable in the study titled "Firm-specific Human Capital: Evidence from CEOs’ Contractual Protections." Included are the 10-K reports of the sample firms, the data processing and the variable estimation code, and the corresponding output.
DOI: 10.6084/m9.figshare.21225386.v1
title: unet database.rar

description: The Database for Mastology Research with Infrared Image (DMR-IR)was developed in 2014 during the PROENG Project at the Institute of Computer Science of the Federal Fluminense University in Brazil. It is currently the only public dataset of breast thermograms It is used to evaluate the proposed methods in this thesis. This database is created by collecting the IR images from the Hospital of UFF University and published publicly with the approval of the ethics committee where consent should be signed by any patient.
DOI: 10.6084/m9.figshare.28891319.v1
title: 研究Data.zip

description: 在全球变暖背景下，开展冰川湖数量/面积变化驱动因素分析及溃发风险评估对区域水资源利用和减灾具有重要意义。很少有研究关注长期、大规模的冰川湖变化，对中亚山脉冰川湖爆发风险的系统调查仍然不足。利用 Google Earth Engine （GEE），我们获得了 2000 年至 2023 年的冰川湖动力学，使用 Geodetector 进行了驱动因素分析，并实施了极端梯度提升 （XGBoost） 进行爆发风险评估。
DOI: 10.6084/m9.figshare.28944617.v1
title: Supplementary Material for: Differentially expressed miRNAs in testes of dominant and subordinate Nile tilapia males and identification of oni-miR-499 as regulator of amh gene expression.

description: Introduction: Gonadal development and reproduction are under the control of the endocrine system, which acts along the brain-pituitary-gonad (BPG) axis. Besides well-known regulators of the BPG axis, such as the gonadotropin-releasing hormone (GnRH), follicle-stimulating hormone (Fsh) and luteinizing hormone (Lh), the Anti-Müllerian hormone (Amh) came into the focus of research on the BPG axis. Amh is expressed differently in the gonads of dominant and subordinate Nile tilapia (Oreochromis niloticus) males and could be involved in the regulation of the differently developed gonads. In addition, the regulatory networks and the control of gene expression depend on microRNAs (miRNAs), an often not considered epigenetic mechanism in hormonal research. Methods: We used a long-term, stable social hierarchy of Nile tilapia males as an experimental system to identify differentially expressed miRNAs in the testes of dominant and subordinate animals. A Dual Luciferase Reporter Assay and in vitro analysis of amh expression in primary testis cells were used to demonstrate predicted interactions. Results: We identified 23 differentially expressed miRNAs in the testes of dominant and subordinate males and predicted the targets in the pools of differentially expressed genes. Using these data, we placed the identified GO terms and KEGG pathways in the context of differently developed gonads under social control. The most differentially expressed miRNA, oni-miR-499, is up-regulated in the testes of dominants and regulates amh expression. Conclusion: We conclude that oni-miR-499 affects testis development via amh expression in Nile tilapia. Many miRNAs and biological processes identified in our study could be conserved mechanisms of testis development.
DOI: 10.6084/m9.figshare.6989063.v3
title: data

description: Behavioral, in vitro and in silico data of the project
DOI: 10.17632/2rcc8488hx
title: Machine Learning of MS dataset

description: Mass spectrometric profiling provides information on the protein and metabolic composition of biological samples. However, the weak efficiency of computational algorithms in correlation between tandem spectra to molecular components (proteins and metabolites) dramatically limits the use of "omics" data for the classification of nosologies. The development of machine learning methods for the intelligent analysis of raw mass spectrometric HPLC-MS/MS measurements without data preprocessing and identification seems promising. In this study, we tested the ap-plication of neural networks of two types, 1D-Residual CNN and 3D-CNN, to the combined metabolomic and proteomic HPLC-MS/MS data for the classification of three cancer phenotypes. Both neural networks are capable of classifying as gender-mixed oncological phenotypes (kidney cancer) as gender-specific phenotypes (ovarian cancer) and recognize healthy condition accuracy of 0.95 by analyzing ‘omics’ data in the ‘mgf’ data format. The neural network makes possible to determine their similarity degree (distance matrix) between submitted phenotypes, thus over-coming algorithmic barriers in identifying HPLC-MS/MS spectra. The closest distance was shown between ovarian cancer, kidney cancer, and prostate cancer/kidney cancer, whereas the healthy phenotype was the most outer from cancer phenotypes. Neural networks are versatile and can be applied to standard experimental data formats of different analytical platforms.