DOI: 10.5061/dryad.95x69p8q5
title: Camera trap grey squirrel photograph data

description: Effective wildlife population management requires an understanding of the
 abundance of the target species. In the UK, the increase in numbers and
 range of the non-native invasive grey squirrel Sciurus carolinensis poses
 a substantial threat to the existence of the native red squirrel S.
 vulgaris, to tree health, and to the forestry industry. Reducing the
 number of grey squirrels is crucial to mitigate their impacts. 
 Camera traps are increasingly used to estimate animal abundance, and
 methods have been developed that do not require the identification of
 individual animals. Most of these methods have been focussed on medium to
 large mammal species with large range sizes and may be unsuitable for
 measuring local abundances of smaller mammals that have variable detection
 rates and hard-to-measure movement behaviour. The aim of this study was to
 develop a practical and cost-effective method, based on a camera trap
 index, that could be used by practitioners to estimate target densities of
 grey squirrels in woodlands to provide guidance on the numbers of traps or
 contraceptive feeders required for local grey squirrel control. Camera
 traps were deployed in ten independent woods of between 6 and 28 ha in
 size. An index, calculated from the number of grey squirrel photographs
 recorded per camera per day had a strong linear relationship (R2 = 0.90)
 with the densities of squirrels removed in trap and dispatch operations.
 From different time filters tested, a 5 minute filter was applied, where
 photographs of squirrels recorded on the same camera within 5 minutes of a
 previous photograph were not counted. There were no significant
 differences between the number of squirrel photographs per camera recorded
 by three different models of camera, increasing the method's
 practical application. This study demonstrated that a camera index could
 be used to inform the number of feeders or traps required for grey
 squirrel management through culling or contraception. Results could be
 obtained within six days without requiring expensive equipment or a high
 level of technical input. This method can easily be adapted to other
 rodent or small mammal species, making it widely applicable to other
 wildlife management interventions.
description: Study sites The study was conducted in 10
 mature woods at the same time of year, between mid-June and mid-July, from
 2018 to 2021 (Table 1). Woods were located in two regions of the UK; eight
 in Yorkshire, England (54°N, 0°W) and two in Denbighshire, Wales (53°N,
 -3°W). Woods were between 6 ha and 28 ha in area and consisted of either
 broadleaf or a mix of broadleaf and conifer trees.  The area of each wood
 was measured from a satellite base map using a measure tool (Google My
 Maps 2018 to 2021). During the study, each wood was sampled once. To
 ensure independence, woods sampled within consecutive years were not
 directly connected to each other via wooded corridors or hedgerows and
 were located at least 600 metres apart. The first seven woods, sampled in
 2018 and 2019, were discrete areas of woodland with little connectivity to
 other woodland areas. The last three woods sampled were highly connected
 to other woodland areas. Camera deployment
 At each wood, camera traps (Reconyx™ HC500 or HS2X) were deployed
 at a density of 1/ha. Camera placement in the field was guided by a 1-ha
 grid generated in ArcGIS (version 10.7.1) overlayed onto a satellite map
 using the ArcGIS Collector mobile phone application and was adjusted
 according to accessibility; for example, steep slopes or thick vegetation
 were avoided (Figure 1a).  Cameras were fixed to trees
 at approximately 1 meter above the ground and with the lens angled between
 horizontal and 45° below horizontal (Figure 1 b). A laser pen or 1-meter
 wooden pole, placed parallel to the base of the camera, was used to
 position a pile of bait at the centre of the camera field of view, between
 1 and 2 meters away from the camera lens. The bait pile consisted of
 approximately 1.5 kg of 50:50 whole maize and peanuts. The cameras were
 set to take one photograph per trigger and the passive infrared sensor to
 high sensitivity. Cameras were deployed for 3–6 days and the bait in front
 of each camera was checked every 1–3 days (guided by a prior assessment of
 potential bait uptake by non-target species) and replenished, if
 required. At the end of each deployment, the cameras
 were removed and all the photographs containing squirrels were digitally
 tagged using the Reconyx MapView Professional™ software. For the first
 five woods, photographs were also tagged with the number of squirrels
 present in each photograph. The resulting data were quality checked by a
 second observer re-analysing a sub-sample of the photographs to ensure
 there was no observer bias in the records. The final photographs taken by
 each camera in each wood were checked for the amount of bait remaining, as
 this is likely to affect squirrel activity and the numb
 Camera index design and selection Four
 camera indices were considered as candidates for estimating grey squirrel
 densities. All indices were based on the number of squirrel photographs
 per number of working cameras per trial day and were designed to be
 practical, cost-effective and representative of squirrel activity. Trial
 days consisted of consecutive 24 hours. The differences between indices
 concerned the time the first trial day began and which trial days were
 used for the photograph counts. Index 1 used all squirrel photographs
 recorded during consecutive 24 hours from the time the last camera was
 deployed in each wood. Index 2 used all squirrel photographs recorded
 during consecutive 24 hours, from 24 hours after the last camera was
 deployed; this was to allow the squirrels time to find the bait piles
 before the assessment began. Index 3 used all squirrel photographs
 recorded within consecutive 24 hours, from 24:00 on the day the cameras
 were deployed. Index 4 used all squirrel photographs from the 24 hours
 that recorded the maximum number of squirrel photographs from each
 consecutive 24 hours starting from when the last camera was deployed; this
 was to provide the maximum level of activity.  For all
 four indices, time filters of 0.5, 1, 2, 3, 4, 5, 10, 20 and 30 minutes
 were applied, where any photographs that were recorded within the
 specified interval after the previous photograph were excluded from the
 photograph counts. The application of a time filter was used to moderate
 inflated counts caused by individuals that remain in front of a camera for
 extended periods of time. This is especially applicable at bait piles,
 where some individuals may feed for longer than others. Linear regressions
 were used to test whether the values calculated for each index could be
 used to predict the density of squirrels trapped and removed in each wood.
 The coefficient of determination (<em>R<sup>2</sup></em>) was calculated as a measure of fit and the statistical significance of the model with the greatest <em>R<sup>2</sup></em> was assessed using an F-test. Data normality was confirmed using a Jarque-Bera test and through plots of the residuals. To make the data processing methods more widely accessible to practitioners, all data analysis was conducted using Microsoft Excel®. Photograph data were not analysed, and the number of cameras adjusted accordingly for days when a camera ceased to work due to insufficient battery power or faults, when the bait had been completely removed, or when the camera was not focussed on any part of the bait pile, due to set up error or if it was subsequently knocked out of position by a person or an animal.
description: Microsoft Excel