cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14278557.v1
title: Inheritance of cowpea resistance to Cowpea aphid-borne mosaic vírus

description: Abstract: The objective of this work was to evaluate the inheritance of resistance to Cowpea aphid-borne mosaic virus (CABMV) in cowpea (Vigna unguiculata). The study was performed between parental genotypes IT85F-2687 (resistant) and 'BR-14 Mulato' (susceptible), generating F1, F2, and F7 populations and backcrosses with both parental genotypes. CABMV was inoculated on plants from all generations, which were then evaluated through visual inspection and description of characteristic symptoms. A chi-square test was performed after the phenotypic classification of all plants. A segregation proportion of 1:3 (resistant:susceptible) in population F2 and of 1:1 in population F7 was accepted, showing a recessive monogenic inheritance.
DOI: 10.6084/m9.figshare.26181122.v1
title: Heart of Care DATASET.xlsx

description: Our study delves into the emotional impact of patient loss on healthcare professionals, identifying coping mechanisms, evaluating workplace support systems, and exploring the role of personal beliefs in managing grief. The research further investigates how these experiences contribute to personal and professional growth, specifically focusing on those working in oncology and palliative medicine.
DOI: 10.6084/m9.figshare.6935882.v1
title: Decision Analysis to Support Agriculture for Nutrition

description: Research supporting development decisions related to agriculture for nutrition often fails to consider the range of ecological, socioeconomic, cultural and political factors that influence agriculture. This often limits decision makers’ ability to rationally decide on the best course of action in developing and implementing agriculture for nutrition interventions. The basic steps in the Decision Analysis process aim to address both why and how decisions are formulated and decision-relevant factors are measured. This approach follows the basic premise that if something has an effect, this effect must be observable and if it is observable, it must be measurable. Through the stochastic and iterative modelling process Decision Analysis can supply decision makers with information about probable impact pathways of agricultural interventions and thereby help them prioritize for the best nutrition outcomes.
DOI: 10.6084/m9.figshare.c.3931579_d19.v1
title: Additional file 27: of Usability of human Infinium MethylationEPIC BeadChip for mouse DNA methylation studies

description: Pahari_EiJ_EPIC. (XLS 1807 kb)
DOI: 10.3535/e8z-qpm-6a3
title: †Holopea J. Hall, 1847

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/t1y-et9-8c2
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1248869.v1
title: D-Brane Potentials in the Warped Resolved Conifold and Natural Inflation

description: Talk given at PhD Student Triangle Seminar, Imperial College London.
DOI: 10.6084/m9.figshare.14130194.v1
title: Figure 6 Data

description: Glyphosate Does Not Directly Inhibit Tyrosinase Activity
DOI: 10.6084/m9.figshare.17010202.v1
title: Additional file 7 of Uncovering the Novel QTLs and Candidate Genes of Salt Tolerance in Rice with Linkage Mapping, RTM-GWAS, and RNA-seq

description: Additional file 7. Table S6. Known genes and their homologous genes in our identified QTLs
DOI: 10.6084/m9.figshare.24321127.v1
title: Ovine50KSNP dataset for indigenous sheep breeds samples from Kenya and European countries experiencing different climatic codnitions

description: This research aimed at investigating the genetic diversity levels and adaptability of native sheep breeds sampled from different climatic regions. To maintain the integrity of genetic diversity within each breed, meticulous care was taken to ensure that samples were derived from genetically distinct individuals. The sampling procedure involved puncturing the jugular veins of individual animals to extract blood samples. The whole processes of DNA extraction, genotyping, and the transformation of raw signals into the Ovine50K genotype were entrusted to Neogen Company Limited. The company employed the Infinium assay protocol for these procedures. Genotypic determinations were made using the ovine Oar_v3.1 assembly, which served as the reference genome
DOI: 10.3535/pdp-4yn-gx8
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qch-p7c-dj6
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8vg-be4-y4q
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/b9b-cgk-qdx
title: †Subulites Emmons, 1842

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.14380730.v1
title: Untitled Item

description: L2 Regularization and R codes for HCA and PCA in the analyses of the stylistic panoramas of Wuxia and Western heroic literature
DOI: 10.6084/m9.figshare.22580922.v1
title: Unsupervised methods for size and shape

description: The aim of this article is to propose unsupervised classification methods for size-and-shape considering two-dimensional images (planar shapes). We present new methods based on hypothesis testing and the K-means algorithm. We also propose combinations of algorithms using ensemble methods: bagging and boosting. We consider simulated data in three scenarios in order to evaluate the performance of the proposed methods. The numerical results have indicated that for the data sets, when the centroid sizes change, the performance of the algorithms improves. In addition, bagging-based algorithms outperform their basic versions. Moreover, two real-world datasets have been considered: great ape skull and mice vertebrae references. These datasets have different configurations, such as multiple reference points and variability. Bagged K-means and boosted K-means methods achieved the best performance on the datasets. Lastly, considering the synthetic and real data, the bagged K-means proved to be the best method.
DOI: 10.6084/m9.figshare.3515090.v1
title: Appendix B. Primary and secondary sampling periods, sampling effort, and number of individual turtles caught at Tour du Valat, France, 1997–2006.

description: Primary and secondary sampling periods, sampling effort, and number of individual turtles caught at Tour du Valat, France, 1997–2006.
DOI: 10.6084/m9.figshare.4019358.v1
title: 1990-1999_network

description: Framing Psychology article network file for 1990s.
DOI: 10.3535/9rf-hb1-w6p
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/z85-f9s-p97
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.17632/xf58rsgj94
title: Data in Brief for research paper: Hu et al., ‘Effects and Mechanism of Ganoderma Lucidum Polysaccharides in the Treatment of Diabetic Nephropathy in Streptozotocin-Induced Diabetic Rats’

description: Ganoderma lucidum polysaccharides (GLP) has renal protection effect but none study on the diabetic nephropathy. This study was to investigate its effect and mechanism using a diabetic rat model induced by streptozotocin (50 mg/kg, i.p.). The diabetic rats were treated with GLP (300 mg/kg/day) for 10 weeks. The blood glucose, glycated-haemoglobin, body weight, and the levels of blood creatinine, urea nitrogen, and urine protein were assessed. Also, renal pathologies were assessed by the tissue sections stained with haematoxylin-eosin, Masson's trichome and periodic acid-Schiff. The expression of p-PI3K, p-Akt, and p-mTOR, the autophagy proteins beclin-1, LC3-II, LC3-I and P62; the apoptosis-related proteins caspase-3 and caspase-9; and the inflammation markers IL-6, IL-1β, and TNF-ɑ were assessed. Results showed that GLP alleviated the impairment of renal function by reducing urinary protein excretion and the blood creatinine level and ameliorated diabetic nephropathy. The expression of p-PI3K, p-Akt, and p-mTOR in the diabetic kidney were significantly reduced in GLP treatment group compared to the without treatment group. GLP treatment activated the autophagy indicators of beclin-1 and the ratio of LC3-II/LC3-I but reduced p62; also inhibited the expression of caspase-3, caspase-9 and IL-6, IL-1β and TNF-ɑ. In conclusion, the effect of GLP amelioration diabetic nephropathy may be via inhibition of the PI3k/Akt/mTOR signaling pathway by inhibition the apoptosis and inflammation and activation the autophagy process.
DOI: 10.3535/4sp-f5q-gn4
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/rft-7pt-h98
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28426628.v2
title: <b>Shared data for the manuscript "</b><b>Orographic Gravity Wave Drag Parameterization Improving the Simulation of Heavy Rainfall Produced by Northeast China Cold Vortex in High-Resolution Numerical Model</b><b>"</b>

description: There are files including WRF simulation data (hourly) with different OGWD parameterization schemes. Variables include geopotential height, u component of wind, v component of wind, orographic gravity wave drag (OGWD). Due to the limitation of file size, we only upload the data used in the manuscript.
DOI: 10.6084/m9.figshare.9563579.v1
title: Small RNA sequencing identify miRNAs involved in pomegranate female sterility

description: Pomegranate pistils were collected from 12-year-old ‘Tunisiruanzi’ (also named ‘Tunisia’) trees grown in nursery of the Zhengzhou Fruit Research Institute located in Zhengzhou, Henan, China, and managed using conventional methods. Solitary flowers located in perennial branches, which contained high ratio of BFs, were selected as the sampling location of BFs’ pistils. Lateral flowers located in annual branches, which were observed with high ratio of FMFs, were selected for FMFs’ pistils. On the other hand, our previous studies showed that the putative cause of pomegranate female sterility was ovule development aborting after the formation of the inner integument primordium . The key stage for the termination of FMF ovule development was during the bud vertical diameter (BVD) was 5.0–13.0 mm. Pistils of FMFs at the pre-stage of FMFs’ ovules aborted (BVD 3.0–5.0 mm), the key stage of FMFs’ ovules aborted (BVD 5.0–13.0 mm), the stage after FMFs’ ovules aborted (BVD 5.0–13.0 mm) were collected for related miRNAs mining, pistils of BFs at the corresponding periods were selected as controls. In order to denote the accessions clearly, we used TNSI, TNSII, and TNSIII represent the BFs’ (Bisexual flowers) pistils when their BVD was 3.0–5.0, 5.1–13.0, 13.1–25.0 mm, respectively. Similarly, the designations ATNSI, ATNSII, and ATNSIII were used to represent the FMFs’ (Functional male flowers) pistils when their BVD was 3.0–5.0, 5.1–13.0, 13.1–25.0 mm, respectively , each stage with three repetitions.
DOI: 10.3535/3q0-bsj-w5e
title: †Asaphidae

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/bwz-8w4-aw7
title: †Diplotrypa petropolitana Nicholson, 1879

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.24417733.v1
title: OpenCitations Index CSV dataset of the provenance information of all the citation data

description: This dataset contains the provenance information (in CSV format) of all the citation data included in the OpenCitations Index, released on 24 October 2023. In particular, each line of the CSV file defines a citation, and includes the following information:<b>[field "oci"]</b> the Open Citation Identifier (OCI) for the citation;<b>[field "snapshot"]</b> the identifier of the snapshot;<b>[field "agent"]</b> the name of the agent that have created the citation data;<b>[field "source"]</b> the URL of the source dataset from where the citation data have been extracted;<b>[field "created"]</b> the creation time of the citation data.<b>[field "invalidated"]</b> the start of the destruction, cessation, or expiry of an existing entity by an activity;<b>[field "description"]</b> a textual description of the activity made;<b>[field "update"]</b> the UPDATE SPARQL query that keeps track of which metadata have been modified.The size of the zipped archive is 12.8 GB, while the size of the unzipped CSV files is 286 GB.
DOI: 10.17632/25fpx9dzsk
title: Unique and Shared Roles for Histone H3K36 Methylation States in Transcription Regulation Functions

description: Raw Western blot and spotting assay data
DOI: 10.3535/9hq-a2m-h75
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.3568284.v1
title: Appendix A. Additional information on relationships implemented in the LandClim beetle module.

description: Additional information on relationships implemented in the LandClim beetle module.
DOI: 10.3535/49x-esa-5n5
title: Cyclocrinites C.E.I. von Eichwald, 1840

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zkj-e89-c82
title: Animalia

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.23298467.v2
title: ORDerly benchmark for condition prediction

description: Benchmark dataset generated by ORDerly for chemical reaction predictionPaper: https://chemrxiv.org/engage/chemrxiv/article-details/64ca5d3e4a3f7d0c0d78ca42Code: https://github.com/sustainable-processes/orderlyA full overview of the datasets used in the paper, and the configs used to generate these datasets, can be found here: https://doi.org/10.6084/m9.figshare.23502372.v1<br><br>
DOI: 10.6084/m9.figshare.24944643.v2
title: Files for Download.xlsx

description: The structure of plant-pollinator mutualistic interactions is important for pollination network stability and robustness in the face of environmental change. Even slight changes in seasonal or annual precipitation patterns (e.g., drought) can disrupt the critical plant-pollinator mutualisms that comprise healthy pollination systems, primarily through changes in the availability of floral resources. Increased instances of drought across regions, especially in the southwestern United States, is a likely threat to plant and pollinator species richness, phenology, and mutualistic associations. In this paper, we evaluate the impacts of short-term drought on the plant-pollinator communities of the San Francisco Peaks in northern Arizona. Specifically, we evaluate how plant and pollinator species abundance, richness, mutualistic interactions, and degree of pollinator generalization differed between a “wet year” (2017) and “dry year” (2018) on the San Francisco Peaks, and how these shifts may be further impacted at three different life zones (elevation zones). We determine that that plant richness and abundance decreased in the dry year, and overall pollinator species generalization increased in the dry year, with a larger number of species considered to be “core generalists”. Additionally, the timing of plant and pollinator activity periods were less consistent in the dry year; there was delayed blooming for many floral resources until after monsoon rains began, and insect activity tended to start and continue later in the season for all life zones. Finally, at the highest life zone Spruce Fir, over half of the pollinator species that foraged during both years showed increases in their total plant partners in the dry year. Increased pollinator generalization for some species in the dry year, despite fewer floral resources, may suggest some degree of plasticity when it comes to partner choice, which may be buffering this local pollination system from community collapse when resources are scarce, especially at higher elevation communities. With changing climate, uncovering which pollinator species and plant-pollinator associations are most critical for local community stability in drought conditions is important for understanding pollination network structure and informing conservation decisions on local scales.
DOI: 10.6084/m9.figshare.28157138.v1
title: Nitrogen Deposition Enhances Soil Organic Carbon Sequestration Through Plant-Soil-Microbe Synergies

description: Boreal forest soil organic carbon (SOC) plays a critical role in mitigating climate change, as these forests contribute around 45% of the total forest carbon sink. However, the effects of nitrogen (N) deposition – a major anthropogenic driver of ecosystem changes – on SOC accumulation remain poorly understood. While some studies report positive impacts of N addition on SOC sequestration due to enhance forest productivity and decrease in soil C release, others suggest neutral or negative effects due to negative effects of excess N and other nutrient limitations, reflecting ecosystem-specific responses and highlighting a need for holistic mechanistic insights. To address this gap, we conducted a long-term N addition experiment in a boreal forest to investigate whether and how N addition affects SOC, as well as how this effect is regulated by plant-soil-microbe synergies.Our study provides a holistic mechanistic understanding of how N addition enhances SOC sequestration through synergistic plant-soil-microbe associations, offering important insights into nutrient management strategies for mitigating climate change.
DOI: 10.6084/m9.figshare.28490312.v1
title: Dates of t test

description: This study aims to investigate the effect of fluid shear stress duration on the mechanical properties of HeLa cells, thereby elucidating the mechanical interaction between cancer cells and the fluid environment during tumor metastasis. To this end, we established an experimental system for fluid shear stress cells in vitro, and used computational fluid dynamics (CFD) software to analyze the flow field characteristics in the parallel plate flow chamber to ensure the stability of laminar flow and the uniformity of shear stress distribution. Subsequently, we used atomic force microscopy (AFM) to measure the mechanical properties of HeLa cells at different time points under physiological fluid shear stress of 10 dyn/cm². The experimental results showed that the morphology, height, and Young modulus of HeLa cells changed significantly with the increase of the duration of fluid shear stress exposure, indicating that fluid shear stress has a significant impact on the mechanical properties of cancer cells. These data provide new insights into the behavior of cancer cells in the fluid environment in vivo and provide an important theoretical basis for biomedical engineering research.This dataset comprehensively records the effect of fluid shear stress duration on the mechanical properties of HeLa cells, aiming to reveal how different durations of fluid shear stress alter cell mechanical properties and their potential role in tumor metastasis. The dataset consists of four main components: atomic force microscopy (AFM) experimental results, computational fluid dynamics (CFD) simulation results, a 3D model of a parallel plate flow chamber system, and a statistical analysis of the mechanical properties of the battery. AFM results consisted of cell morphology images and Young's modulus plots under five experimental conditions (0, 5, 15, 30, and 60 min) at 10 dyn/cm² shear stress, analyzed using NanoScope Analysis 1.9. CFD results simulated using ANSYS Fluent 18.0 describe the flow field behavior under four shear stress conditions (5, 10, 15 and 20 dyn/cm²). The parallel plate flow chamber system designed in SOLIDWORKS 2022 includes detailed 3D models and fabrication drawings. The statistical results are presented as Excel files summarizing Young's modulus measurements of HeLa cells, providing quantitative insights into the effects of fluid shear stress on cell mechanics. Datasets can be analyzed using tools such as NanoScope 1.9 analysis for AFM data, ANSYS Fluent 18.0 for CFD results, Solidworks 2022 for 3D models, and Microsoft Excel for statistical analysis.
DOI: 10.3535/0ma-rgp-2pn
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/8ag-scn-p21
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1136081_d295
title: Ex14R58 YFP-1 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.26357362.v1
title: Communication range predicts dolphin alliance size in a cooperative mating system

description: Please see 'READ_ME_description.pdf' file for further description of this dataset.
DOI: 10.3535/w24-bss-sbb
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/yqx-0ja-0xa
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.5656990.v1
title: Additional file 7: of Using variant databases for variant prioritization and to detect erroneous genotype-phenotype associations

description: Allele frequency cut-offs for autosomal dominant disorders for various database sizes and disease prevalence. (XLS 60Â kb)
DOI: 10.3535/jrf-9dv-w5t
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/le7-zfq-390
title: Agate

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.1004418.v1
title: ATAM 9

description: ATAM 9
DOI: 10.6084/m9.figshare.11997450.v1
title: Seroprevalence of toxoplasmosis in pregnant women and its associated factors among hospital and community populations in Lambayeque, Peru

description: Abstract INTRODUCTION Toxoplasmosis is a zoonosis caused by Toxoplasma gondii. This study investigated the prevalence and factors associated with toxoplasmosis among pregnant women. METHODS We followed an analytical observational study. From July 2016 to June 2017, 218 pregnant women were selected. The infection was detected through serological dosage of anti-T.gondii Immunoglobulin(Ig) M and IgG antibodies. RESULTS The seroprevalence was 35.8%; the factors associated with infection were consumption of non-drinking water, residence in an urban area, and threatened abortion during the current pregnancy. CONCLUSIONS The seroprevalence of toxoplasmosis among pregnant women is high. The risk factors are dependent on environmental determinants.
DOI: 10.3535/2nf-010-3n7
title: Brachiopoda Duméril, 1805

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/k1s-adg-r7h
title: †Trilobita

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.28255742.v1
title: Stenotrophomonas maltophilia wgMLST scheme.

description: Backup of BioNumerics Stenotrophomonas maltophilia wgMLST scheme.
DOI: 10.6084/m9.figshare.c.3611075_d18.v1
title: Additional file 23: Table S8. of Measure transcript integrity using RNA-seq data

description: edgeR detected top 117 differentially expressed genes (FDR cutoff = 0.01) in GBM samples using 3′ count method (3TC). FC = Fold Change; CPM = Count Per Million; FDR = False Discovery Rate. (XLS 22 kb)