cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11583/dtu.27846201
title: Data and Results for <i>Performance Assessment of High-throughput Gibbs Free Energy Predictions of Crystalline Solids</i>

description: This data repository was created by Rasmus Fromsejer (Technical University of Denmark) to supplement the research paper "Performance Assessment of High-throughput Gibbs Free Energy Predictions of Crystalline Solids" by Rasmus Fromsejer, Bjørn Maribo-Mogensen, Georgios Kontogeorgis and Xiaodong Liang.<br>Fromsejer, Rasmus; Maribo-Mogensen, Bjørn; Kontogeorgis, M. Georgios; Liang, Xiaodong (2024). Technical University of Denmark. Dataset. doi: 10.11583/DTU.27846201. Licensed under CC BY 4.0.<br>The dataset consists of two parts, one for the NBS-based data and one for the NIST-JANAF-based data (as described in the paper).<br>The data are structured as follows (see README file for more detailed information):Datasets:Calculations: folders with information and calculation results from MLIP electronic and phonon calculations.Databases: contains database(s) with all non-reaction-network data, including calculated and experimental data. This database is used as input for the reaction network.Reactionsthe reactions generated for the reaction network (for each compound).Results:folders with reaction network results (i.e. predictions and associated info) for each temperature.<br>Materials Project ids are used to label/identify the compounds.
DOI: 10.17632/m58f9rfzf5.1
title: DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation

description: Raw data files for the manuscript titled - "DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation"
DOI: 10.17632/m58f9rfzf5.2
title: DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation

description: Raw data files for the manuscript titled - "DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation"
DOI: 10.11583/dtu.27846201.v1
title: Data and Results for <i>Performance Assessment of High-throughput Gibbs Free Energy Predictions of Crystalline Solids</i>

description: This data repository was created by Rasmus Fromsejer (Technical University of Denmark) to supplement the research paper "Performance Assessment of High-throughput Gibbs Free Energy Predictions of Crystalline Solids" by Rasmus Fromsejer, Bjørn Maribo-Mogensen, Georgios Kontogeorgis and Xiaodong Liang.<br>Fromsejer, Rasmus; Maribo-Mogensen, Bjørn; Kontogeorgis, M. Georgios; Liang, Xiaodong (2024). Technical University of Denmark. Dataset. doi: 10.11583/DTU.27846201. Licensed under CC BY 4.0.<br>The dataset consists of two parts, one for the NBS-based data and one for the NIST-JANAF-based data (as described in the paper).<br>The data are structured as follows (see README file for more detailed information):Datasets:Calculations: folders with information and calculation results from MLIP electronic and phonon calculations.Databases: contains database(s) with all non-reaction-network data, including calculated and experimental data. This database is used as input for the reaction network.Reactionsthe reactions generated for the reaction network (for each compound).Results:folders with reaction network results (i.e. predictions and associated info) for each temperature.<br>Materials Project ids are used to label/identify the compounds.
DOI: 10.17632/m58f9rfzf5.3
title: DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation

description: Raw data files for the manuscript titled - "DNA methyltransferase 1 modulates mitochondrial function through bridging m5C RNA methylation"
DOI: 10.17632/gkzrhyc6tj.1
title: SONOBIRDIE Trial

description: Minimising perioperative vascular complications after carotid endarterectomy is essential for its safe use.
We hypothesised that activation of the fibrinolytic system and a direct mechanical effect on flowing thrombi in intracranial arteries by use of sonolysis during carotid endarterectomy could reduce the risk of cerebrovascular events, such as ischaemic stroke, transient ischaemic attack, and silent brain infarction. We did a randomised controlled clinical trial to evaluate the effectiveness and safety of sonolysis during carotid endarterectomy.
The Sonolysis in Prevention of Brain Infarctions During Internal Carotid Endarterectomy (SONOBIRDIE) trial is a randomised, double blind, sham controlled study designed to demonstrate the safety and effectiveness of sonolysis. 
The primary endpoint was a composite incidence of ischaemic stroke, transient ischaemic attack, and death over the course of 30 days after randomisation. Secondary efficacy endpoints included occurrence of any stroke within 30 days (including ischaemic stroke, intracerebral haemorrhage, subarachnoid haemorrhage, and unspecified stroke), myocardial infarction within 30 days, death within 30 days, and death within one year.
Endpoints of the magnetic resonance imaging substudy were appearance of at least one new ischaemic lesion on a post-procedural brain scan, number of new ischaemic lesions on a post-procedural brain scan, appearance of at least one new ischaemic lesion ≥0.5 mL in volume on post-procedural diffusion weighted brain imaging, and appearance of at least one new ipsilateral ischaemic lesion on post-procedural diffusion weighted brain imaging. All endpoints of the magnetic resonance imaging substudy were assessed 24 hours (within four hours either side) after carotid endarterectomy.
Safety endpoints included adverse events, serious adverse events, and incidence of haemorrhagic stroke, including subarachnoid haemorrhage, within 30 days after carotid endarterectomy and incidence of intracranial bleeding (including brain microbleeds) on a control T2* weighted gradient recalled echo sequence in the magnetic resonance imaging substudy.
A total of 1004 patients from 16 centres in three European countries were enrolled between 20 AUG 2015 and 14 OCT 2020 until interim analysis in the randomised phase of the trial. Members of the DSMB evaluated the interim analysis results for the first 1000 enrolled patients and unanimously recommended stopping the SONOBIRDIE trial early owing to clear evidence of efficacy. 
The SONOBIRDIE trial showed that periprocedural sonolysis during carotid endarterectomy significantly reduced the risk of ischaemic stroke, transient ischaemic attack, and new brain infarction detected using magnetic resonance imaging of the brain, with no increase in the risk of any adverse events.
The dataset includes ID data of patients and centers, data from initial (screening/randomization) visit, surgery data, data from visitafter 24 h, 30 d, and 1 year.
DOI: 10.6084/m9.figshare.28390712
title: Carbon fibre production using an ecofriendly water-soluble precursor

description: Source data for Carbon fibre production using an ecofriendly water-soluble precursor
DOI: 10.6084/m9.figshare.28390712.v1
title: Carbon fibre production using an ecofriendly water-soluble precursor

description: Source data for Carbon fibre production using an ecofriendly water-soluble precursor
DOI: 10.15468/dl.fnzhtj
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Viet Nam, Cambodia, Indonesia, Nepal, Philippines, Malaysia, Chinese Taipei, Bangladesh, Lao People’s Democratic Republic, Thailand, Bhutan)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tagetes patula L."
 ]
}

 The dataset includes 316 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004294-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9h9tvf
title: Occurrence Download

description: A dataset containing 91942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyps fulvus (Hablizl, 1783)",
 "HasCoordinate is true",
 "Year is greater than 1989",
 "Year is less than 2026",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is Absent"
 ]
 }
 },
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 91942 records from 280 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004291-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw8pj8
title: Occurrence Download

description: A dataset containing 66107 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ningaloo Outlook turtle tracking of Green turtles (Chelonia mydas), Western Australia (2018-present)"
 ]
}

 The dataset includes 66107 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004292-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpu5j2
title: Occurrence Download

description: A dataset containing 2151033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Psammotettix albomarginatus Wagner, 1941, Parnassius apollo (Linnaeus, 1758), Eligma narcissus (Cramer, 1775), Pieris naganum (Moore, 1884), Samia cynthia pryeri, Rothschildia hesperus Linnaeus, 1758, Rothschildia arethusa Walker, 1855, Hespericerus brusinae (Horváth, 1895), Streblote igniflua (Moore), Atteva niveigutta Walker, 1854, Atteva fabriciella (Swederus, 1787), Erebia epiphron Knoch, 1783, Chloephaga rubidiceps P.L.Sclater, 1861, Chloephaga picta (J.F.Gmelin, 1789), Hipparchia semele Linnaeus, 1758, Hemaris fuciformis Linnaeus, 1758, Emelyanoviana mollicula (Boheman, 1845), Osmia bicornis (Linnaeus, 1758), Erysiphe biocellata Ehrenb., Ramularia ajugae (Niessl) Sacc., Pristerognatha fuligana (Denis & Schiffermüller), 1775, Aphthona pallida (Bach, 1856), Podops inunctus (J.C.Fabricius, 1775), Pseudosciaphila branderiana (Linnaeus, 1758), Amara bifrons (Gyllenhal, 1810), Eupteryx calcarata Ossiannilsson, 1936, Eupteryx vittata (Linnaeus, 1758), Eupteryx atropunctata (Goeze, 1778), Glechoma hederacea L., Neocrepidodera ferruginea (Scopoli, 1763), Amara nitida Sturm, 1825, Barypeithes pellucidus (Boheman, 1834), Bombus argillaceus (Scopoli, 1763), Athalia cordata Serville, 1823, Amara lunicollis Schiödte, 1837, Anthophora plumipes (Pallas, 1772), Amphimallon solstitiale (Linnaeus, 1758), Bombus pratorum (Linnaeus, 1761), Chorthippus apricarius (Linnaeus, 1758), Chorthippus biguttulus (Linnaeus, 1758), Osmia caerulescens (Linnaeus, 1758), Bombus vestalis (Geoffroy, 1785), Agriotes sputator (Linnaeus, 1758), Phyllosticta ajugae Sacc. & Speg., Biston robustum Butler, 1879, Ricania shantungensis Chou & Lu, 1977, Eudocima tyrannus (Guenée, 1852), Akebia quinata (Houtt.) Decne., Semiothisa pluviata (Fabricius, 1798), Rhesala moestalis Walker, 1865)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2151033 records from 5907 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004284-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hggpkc
title: Occurrence Download

description: A dataset containing 11996 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((151.2123 -10.18881, 153.0218 -10.18881, 153.0218 -8.641833, 151.2123 -8.641833, 151.2123 -10.18881))"
 ]
}

 The dataset includes 11996 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012973-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbqegp
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (MEX.25.18_2, MEX.25.11_2)",
 "TaxonKey is Quiscalus Vieillot, 1816"
 ]
}

 The dataset includes 100 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012975-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ak4w79
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Osmeriformes",
 "Geometry POLYGON ((1.2219 37.0382, -0.0352 36.4794, -0.0352 28.8496, 8.9648 28.8496, 8.9648 37.5879, 8.4538 37.4177, 7.4601 37.5841, 6.845 37.4576, 6.4593 37.5936, 5.3421 37.2141, 4.9133 37.3804, 3.8874 37.4256, 1.2219 37.0382))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008212-250525065834625/datasets/export for details.
DOI: 10.14288/1.0397548
title: Data from: Homogenization of populations in the wildflower Texas bluebonnet (Lupinus texensis)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Wildflowers seeds are routinely spread along highways and thoroughfares throughout North America as part of federal beautification policy, but the genetic effect of the introduction of these cultivated populations on wild populations of the same species is unknown. Interbreeding may occur between these seeded and wild populations, resulting in several possible outcomes. Here we sample 187 individuals in 12 matched pairs of neighboring wild and seeded populations of the Texas bluebonnet (Lupinus texensis), a species popular in commercially available wildflower seed mixes used by both the Texas Department of Transportation and the public. We use genotyping by sequencing to identify 11,741 genome-wide single nucleotide polymorphisms, as well as a smaller number of SNPs from the chloroplast genome, to analyze population structure and genetic diversity within and between the populations. We find a striking lack of population structure both between wild and seeded populations and amongst wild populations. STRUCTURE analyses indicate that all populations are apparently panmictic. This pattern may be explained by extensive swamping of wild populations by seeded germplasm and increased dispersal of semi-domesticated seed across this species’ core native range by humans. We discuss the possible negative and positive ramifications of homogenization on the evolutionary future of this popular wildflower species.
DOI: 10.14288/1.0397549
title: Data from: Reconciling extremely strong barriers with high levels of gene exchange in annual sunflowers

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;In several cases, estimates of gene flow between species appears to be higher than predicted given the strength of interspecific barriers. However, as far as we are aware, detailed measurements of reproductive isolation have not previously been compared with a coalescent-based assessment of gene flow. Here, we contrast these two measures in two species of sunflower, Helianthus annuus and Helianthus petiolaris. We quantified the total reproductive barrier strength between these species by compounding the contributions of the following prezygotic and postzygotic barriers: ecogeographic isolation, reproductive asynchrony, immigrant inviability, pollen competition, hybrid seed formation, hybrid seed germination, hybrid pollen fertility, and hybrid seed set. The estimated probabilities that a reproductively successful hybrid is produced: range from 10^-4 to 10^-6 depending on the direction of the cross and the degree of independence among reproductive barriers. Population genetic estimates of gene flow estimated between these sunflower species (N_e m = 0.34-0.76) are due mainly to their large effective population sizes (N_e &gt;10^6). The interspecific migration rate (m) is very small (&lt;10^-7) and an order of magnitude lower than that expected based on our reproductive barrier strength estimates. Thus, even high levels of reproductive isolation (&gt; 0.999) may produce genomic mosaics.
DOI: 10.14288/1.0397551
title: Data from: Evolution and origin of sympatric shallow-water morphotypes of Lake Trout, Salvelinus namaycush, in Canada's Great Bear Lake

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Range expansion in north-temperate fishes subsequent to the retreat of the Wisconsinan glaciers has resulted in the rapid colonization of previously unexploited, heterogeneous habitats and, in many situations, secondary contact among conspecific lineages that were once previously isolated. Such ecological opportunity coupled with reduced competition likely promoted morphological and genetic differentiation within and among post-glacial fish populations. Discrete morphological forms existing in sympatry, for example, have now been described in many species, yet few studies have directly assessed the association between morphological and genetic variation. Morphotypes of Lake Trout, Salvelinus namaycush, are found in several large-lake systems including Great Bear Lake (GBL), Northwest Territories, Canada, where several shallow-water forms are known. Here, we assess microsatellite and mitochondrial DNA variation among four morphotypes of Lake Trout from the five distinct arms of GBL, and also from locations outside of this system to evaluate several hypotheses concerning the evolution of morphological variation in this species. Our data indicate that morphotypes of Lake Trout from GBL are genetically differentiated from one another, yet the morphotypes are still genetically more similar to one another compared with populations from outside of this system. Furthermore, our data suggest that Lake Trout colonized GBL following dispersal from a single glacial refugium (the Mississippian) and support an intra-lake model of divergence. Overall, our study provides insights into the origins of morphological and genetic variation in post-glacial populations of fishes and provides benchmarks important for monitoring Lake Trout biodiversity in a region thought to be disproportionately susceptible to impacts from climate change.
DOI: 10.14288/1.0397552
title: Data from: Molecular phylogeny of an ancient rodent family (Aplodontiidae)

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;The family Aplodontiidae contains a single, monotypic extant genus, Aplodontia (mountain beaver), which was 1st described by Rafinesque in 1817. Phylogenetic studies have shown that it is the sister lineage to squirrels. Aplodontia rufa is endemic to the Pacific Northwest and ranges from central California to British Columbia. Currently, 7 described subspecies are recognized based on morphological taxonomic studies. In this study, mitochondrial and nuclear genes were sequenced to infer molecular phylogenies of A. rufa. One of the goals of this study was to test the current taxonomic hypothesis based on morphology with molecular data. Another goal was to incorporate geographic information to elucidate distributions of major clades. Our results support the previously held subspecies designations based on morphological taxonomy, with 1 main exception: we determined that within A. rufa, the subspecies A. rufa rainieri and A. rufa rufa north of the Columbia River represent a single lineage and should revert to the name A. rufa olympica. Although we revised geographic boundaries for some groups (A. r. rufa, A. r. olympica, A. r. pacifica), only the conservation status and management of A. r. olympica (previously 2 subspecies) in Canada may be affected. Our findings support the continued conservation efforts for the isolated and endangered lineages present in coastal California.
DOI: 10.15468/dl.zf92qh
title: Occurrence Download

description: A dataset containing 4447 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Colección Herpetológica (Reptiles) del Museo de Historia Natural de la Universidad Industrial de Santander"
 ]
}

 The dataset includes 4447 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000456-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.14288/1.0397553
title: Data from: Genetic specificity of a plant-insect food web: implications for linking genetic variation to network complexity

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;Theory predicts that intraspecific genetic variation can increase the complexity of an ecological network. To date, however, we are lacking empirical knowledge of the extent to which genetic variation determines the assembly of ecological networks, as well as how the gain or loss of genetic variation will affect network structure. To address this knowledge gap, we used a common garden experiment to quantify the extent to which heritable trait variation in a host plant determines the assembly of its associated insect food web (network of trophic interactions). We then used a resampling procedure to simulate the additive effects of genetic variation on overall food-web complexity. We found that trait variation among host-plant genotypes was associated with resistance to insect herbivores, which indirectly affected interactions between herbivores and their insect parasitoids. Direct and indirect genetic effects resulted in distinct compositions of trophic interactions associated with each host-plant genotype. Moreover, our simulations suggest that food-web complexity would increase by 20% over the range of genetic variation in the experimental population of host plants. Taken together, our results indicate that intraspecific genetic variation can play a key role in structuring ecological networks, which may in turn affect network persistence.