cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zfa8b2
title: Occurrence Download

description: A dataset containing 311 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, Observation.org, Nature data from around the World)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hellenolacerta graeca (Bedriaga, 1886)"
 ]
}

 The dataset includes 311 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059768-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqrv9t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((28.1382 11.0599,19.1382 11.0599,19.1382 2.0599,28.1382 2.0599,28.1382 11.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059769-250525065834625/datasets/export for details.
DOI: 10.15468/dl.m3nh94
title: Occurrence Download

description: A dataset containing 1667138 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is CSIC-Real Jardín Botánico-Anthos. Sistema de Información de las Plantas de España"
 ]
}

 The dataset includes 1667138 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059756-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugk3mn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059770-250525065834625/datasets/export for details.
DOI: 10.15468/dl.xtfy67
title: Occurrence Download

description: A dataset containing 2201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Natator depressus (Garman, 1880)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2020"
 ]
}

 The dataset includes 2201 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059771-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rg9rs4
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is sousa chinensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059772-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5x9y3
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Bitis armata (Smith, 1826)"
 ]
}

 The dataset includes 43 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059773-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsaqnt
title: Occurrence Download

description: A dataset containing 16290 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ips typographus (C.Linnaeus, 1758)"
 ]
}

 The dataset includes 16290 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059774-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29370506
title: digital social media

description: ppppp
DOI: 10.6084/m9.figshare.29370506.v1
title: digital social media

description: ppppp
DOI: 10.15468/dl.52ehzq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059776-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5w5edw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((10.2584 37.8417,10.1382 37.8331,10.1382 29.0599,19.1382 29.0599,19.1382 30.7949,19.1126 30.773,17.9925 31.4051,15.9884 31.8343,15.8046 32.3907,15.4499 32.8216,13.5086 33.3826,12.4536 33.3149,11.5886 33.6969,11.3735 34.2058,11.8094 34.3437,11.9549 34.6971,11.6647 35.1911,11.52 35.9576,11.266 36.2511,11.6196 36.7465,11.497 37.3197,11.2593 37.5361,10.5978 37.5948,10.2584 37.8417))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059775-250525065834625/datasets/export for details.
DOI: 10.15468/dl.8gexb8
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is sousa chinensis"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059778-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bp9766
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((19.1382 20.0599,10.1382 20.0599,10.1382 11.0599,19.1382 11.0599,19.1382 20.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059780-250525065834625/datasets/export for details.
DOI: 10.15468/dl.2r9bg2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059779-250525065834625/datasets/export for details.
DOI: 10.34740/kaggle/dsv/12227566
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.cyumxw
title: Occurrence Download

description: A dataset containing 16290 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ips typographus (C.Linnaeus, 1758)"
 ]
}

 The dataset includes 16290 records from 208 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059777-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mec6e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((19.1382 29.0599,10.1382 29.0599,10.1382 20.0599,19.1382 20.0599,19.1382 29.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059781-250525065834625/datasets/export for details.
DOI: 10.15468/dl.rhxvvz
title: Occurrence Download

description: A dataset containing 619 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "OccurrenceStatus is Present",
 "TaxonKey is Bitis atropos (Linnaeus, 1758)"
 ]
}

 The dataset includes 619 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059782-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5258/soton/d3563
title: Dataset for PhD thesis 'Development of a methodology for the automated spatial mapping of heterogeneous elastoplastic properties of welded joints'

description: Dataset containing the core MATLAB input files corresponding to the PhD Thesis 'Development of a methodology for the automated spatial mapping of heterogeneous elastoplastic properties of welded joints'
DOI: 10.5281/zenodo.15704946
title: Databases used for the analysis (trial registration project)

description: Three databases:



Variables associated with improper trial registration

Registration deficiencies and publication status

Authors' claims of proper registration at submission
DOI: 10.15468/dl.9kvpqn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059783-250525065834625/datasets/export for details.
DOI: 10.15468/dl.rgsddu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.8118 -6.3344,12.1951 -6.9401,19.1382 -6.9401,19.1382 2.0599,10.1382 2.0599,10.1382 -3.5292,11.2947 -4.7801,11.675 -5.4229,11.8118 -6.3344))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059784-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ffr35v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.7576 -24.3688,20.529 -24.0715,20.509 -24.0715,20.509 -28.5786,25.5395 -28.5786,25.5395 -24.0715,25.1306 -24.0715,24.9333 -24.4571,23.8962 -24.2467,22.8065 -24.295,22.3719 -24.7207,22.2323 -25.547,22.0387 -25.7188,21.7833 -25.7784,21.5388 -25.7113,21.3553 -25.5415,20.7576 -24.3688))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059785-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jeypxb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((19.1382 11.0599,10.1382 11.0599,10.1382 2.0599,19.1382 2.0599,19.1382 11.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059786-250525065834625/datasets/export for details.
DOI: 10.15468/dl.kutvcz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.529 -24.0715,20.509 -24.0455,20.509 -24.0715,20.529 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059788-250525065834625/datasets/export for details.
DOI: 10.15468/dl.977ngk
title: Occurrence Download

description: A dataset containing 21616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-114.31766 32.47796,-114.46682 32.16992,-113.97819 31.83213,-113.66604 31.73622,-113.47188 31.73165,-113.26779 32.15639,-113.2059 32.48375,-113.32787 32.6502,-114.31766 32.47796))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 21616 records from 195 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059787-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/861b8d58-eb91-41dd-9fd6-87b96a16248d
title: Impact of Permittivity Grading on Coupled Resonance in Hybrid-ENZ Metasurfaces (dataset)

description: The data was collected throught experimental characterisation or numerical modelling using Ansys Lumerical FDTD, as described in the main manuscript.
The data is stored in the following formats: Raw ellipsometry data and ellipsomtery model information is stored in a propriatary format from Woollam and requires the CompleteEase software to be opened.

Extracted permittivity data, as well as all transmission data (both experimental and numerical) and field distirbution data (numerical) are all stored in an Excel spreadsheet and can be opened using microsoft office (or compatible software).
DOI: 10.15468/dl.ujumn5
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "GadmGid is IND.35_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rubus nepalensis (Hook.fil.) Kuntze"
 ]
}

 The dataset includes 37 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059789-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adryhg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((14.0551 -24.7971,14.1824 -24.9401,19.1382 -24.9401,19.1382 -15.9401,11.232 -15.9401,11.1685 -16.5532,11.3443 -18.2026,12.161 -19.3946,13.5014 -21.9972,13.9613 -22.5582,13.9546 -24.0815,14.0551 -24.7971))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059790-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7xd94r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059791-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ergfhh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059792-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jztxsh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.254 -15.728,11.232 -15.9401,19.1382 -15.9401,19.1382 -6.9401,12.1951 -6.9401,12.344 -7.1754,12.8488 -8.4495,12.5495 -8.8082,12.5162 -9.2401,13.3445 -11.0815,13.2057 -11.9763,12.5854 -12.4817,12.0545 -13.266,11.8142 -14.5077,11.254 -15.728))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059793-250525065834625/datasets/export for details.
DOI: 10.15468/dl.pjnvz6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heteroleibleinia (Geitler) L.Hoffmann, 1905",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059794-250525065834625/datasets/export for details.
DOI: 10.15468/dl.usngbq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Malapterurus occidentalis Norris, 2002",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((10.1382 20.0599,1.1382 20.0599,1.1382 11.0599,10.1382 11.0599,10.1382 20.0599))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059795-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15704976
title: Look Up table with Embeddings - UniProt - 2025 - Non Computational annotations

description: This PostgreSQL database contains structured information extracted from the UniProt API (retrieved in April 2025). It includes:





126,582 proteins




123,518 sequences




494.072 embeddings generated with ProtT5, ProSTT5, ESM2, Ankh




623,134 GO term annotations (with evidence codes: EXP, IDA, IPI, IMP, IGI, IEP, TAS, IC)




Associated biological metadata



The data was extracted using the protein-information-system repository and is used within the FANTASIA pipeline for automated functional annotation of protein sequences.

The following UniProt API filter was applied to retrieve annotations:https://www.uniprot.org/uniprotkb?query=%28+go_exp%3A*+OR+go_ida%3A*+OR+go_ipi%3A*+OR+go_imp%3A*+OR+go_igi%3A*+OR+go_iep%3A*+OR+go_tas%3A*+OR+go_ic%3A*%29To ensure embedding reproducibility, all sequences were processed with batch size = 1, avoiding discrepancies caused by padding artifacts common in PLMs like ProtT5.

To initialize the database, either of the following methods can be used:

Option 1: Using pg_restore

pg_restore -U usuario -h localhost -p 5432 -d BioData ./BioData_backup_2025_hq.tar


Option 2: Using the FANTASIA CLI

fantasia initialize --embeddings_url https://zenodo.org/records/15704357/files/PIS_2025_ankh_exp.tar?download=1

Notes: