cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8031022
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Antoine Auguste Mathieu, http://www.wikidata.org/entity/Q21520112. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21520112
DOI: 10.5281/zenodo.8031021
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Antoine Auguste Mathieu, http://www.wikidata.org/entity/Q21520112. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21520112
DOI: 10.5281/zenodo.8030986
title: JosephHookerHTR-test

description: Correspondence of Joseph Dalton Hooker, primarily letters to William Turner Thiselton-Dyer during the late 19th / early 20th century.
DOI: 10.5281/zenodo.8030985
title: JosephHookerHTR-test

description: Correspondence of Joseph Dalton Hooker, primarily letters to William Turner Thiselton-Dyer during the late 19th / early 20th century.
DOI: 10.17909/hkn3-fv52
title: NUV and FUV FITS for NGC 3198

description: Figure 6 of paper “Radial Outflow Explains the Rotation Curves of Disk Galaxies” (Schulz, 2023)
compares Optical, UV, and HI views of NGC 3198. The FITS files archived here are the original data which produced
the Aladin colorized UV image used in the comparison.
DOI: 10.5281/zenodo.7901464
title: GDAP1 (full-length) SAXS-electron density map reconstruction using DENSS

description: Processed GDAP1 saxs data analyzed with DENSS
description: {"references": ["Grant, T. Ab initio electron density determination directly from solution scattering data. Nat Methods 15, 191\u2013193 (2018). https://doi.org/10.1038/nmeth.4581"]}
DOI: 10.5281/zenodo.7901463
title: GDAP1 (full-length) SAXS-electron density map reconstruction using DENSS

description: Processed GDAP1 saxs data analyzed with DENSS
description: {"references": ["Grant, T. Ab initio electron density determination directly from solution scattering data. Nat Methods 15, 191\u2013193 (2018). https://doi.org/10.1038/nmeth.4581"]}
DOI: 10.5281/zenodo.7996634
title: Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains

description: <strong>Template files and estimation files in Fastsimcoal2 for 16 models. Each model corresponded with the same name in Fig S2 and Fig S3. And SNP file, plastome matrix and transcriptome matrixes</strong>
DOI: 10.5281/zenodo.6830419
title: Multiple paternally inherited chloroplast capture events associated with Taxus speciation in the Hengduan Mountains

description: <strong>Template files and estimation files in Fastsimcoal2 for 16 models. Each model corresponded with the same name in Fig S2 and Fig S3. And SNP file, plastome matrix and transcriptome matrixes</strong>
DOI: 10.21227/92fk-ve64
title: Evaluation Results of Benchmarking Actor-Critic Deep Reinforcement Learning Algorithms for Robotics Control with Action Constraints

description: This study presents a benchmark for evaluating action-constrained reinforcement learning (RL) algorithms. In action-constrained RL, each action taken by the learning system must comply with certain constraints. These constraints are crucial for ensuring the feasibility and safety of actions in real-world systems. We evaluate existing algorithms and their novel variants across multiple robotics control environments, encompassing multiple action constraint types. Our evaluation provides the first in-depth perspective of the field, revealing surprising insights, including the effectiveness of a straight- forward baseline approach. The benchmark problems and as- sociated code utilized in our experiments are made avail- able online at github.com/omron-sinicx/action-constrained-RL- benchmark for further research and development
DOI: 10.21227/qwd2-jd89
title: Evaluation Results of Benchmarking Actor-Critic Deep Reinforcement Learning Algorithms for Robotics Control with Action Constraints

description: This study presents a benchmark for evaluating action-constrained reinforcement learning (RL) algorithms. In action-constrained RL, each action taken by the learning system must comply with certain constraints. These constraints are crucial for ensuring the feasibility and safety of actions in real-world systems. We evaluate existing algorithms and their novel variants across multiple robotics control environments, encompassing multiple action constraint types. Our evaluation provides the first in-depth perspective of the field, revealing surprising insights, including the effectiveness of a straight- forward baseline approach. The benchmark problems and as- sociated code utilized in our experiments are made avail- able online at github.com/omron-sinicx/action-constrained-RL- benchmark for further research and development.
DOI: 10.5281/zenodo.8018965
title: IBHI

description: Metagenomics project
DOI: 10.5281/zenodo.7939272
title: IBHI

description: Metagenomics project
DOI: 10.6084/m9.figshare.23504736
title: JLS Luminescence chronology of reticulated laterites

description: Laterite is a red weathering crust developed with various rocks and Quaternary loose sediments as its parent material in the tropics and subtropics regions of the world. Since the 1930s, researchers have believed that the fluvial reticulated laterite in southern China was influenced by the warm and humid climate of the Middle Pleistocene. In recent years, the remains of Paleolithic human activities are often found in the reticulated laterite of southern China. However, the study of laterite chronology is sporadic or there is no critical chronological analysis, which causes uncertainty in the identification and discussion of the ages of reticulated laterite and Paleolithic sites. In this study, a paleolithic site found in fluvial reticulated laterite in South China was systematically tested by quartz optical luminescence dating and geomorphic process analysis. The results show that, (1) The T3 terrace, an archive of hominin activity in the study area, primarily formed between 56 and 11 ka. (2) Reticulated laterite cannot be used simply to determine the ages of the Paleolithic sites found in this stratum, and typical reticulated laterite cannot be used as a marker for climatic stratigraphy and chronostratigraphy. The fluvial reticulated laterite in the southern tropics, under suitable hydrothermal conditions, can form within tens of thousands of years or even within 10 ka. (3) Human activities can affect the burial age of reticulated laterite, and the stratigraphic diachronism of riverine terraces can also lead to an inversion in the age of reticulated laterite.
DOI: 10.6084/m9.figshare.23504742
title: Characterization and Immunophenotyping of Umbilical cord Mesenchymal Stem Cells Conditioned Media

description: The data contains the characterization and immunophenotyping of Umbilical cord Mesenchymal stem cells used for the study entitled Effect of Umbilical Cord Mesenchymal Stem Cells with/without Silymarin on Apoptosis, Immunomodulation, Proliferation, and Necrosis of HepG2 cells
DOI: 10.5439/1984395
title: sashenirlowsun (a0)

description: The shortwave array spectroradiometer—hemispheric (SASHE) uses a hemispheric spectralon diffuser and rotating shadowband similar to the MFRSR and RSS instruments, so it also provides spectrally resolved, direct-normal, diffuse-horizontal, and total-horizontal irradiances, and can be calibrated in situ via Langley regression. The SASHE incorporates two Avantes fiber-coupled spectroradiometers (Avaspec ULS 2048 CCD and Avaspec NIR256-1.7) for visible and near-infrared detection in the wavelength range 350-1700 nm. The spectral resolution is 2.4 nm for the ULS 2048 CCD and 6 nm for the NIR256-1.7. Like the SWS and SASZE, an external collector mounted outdoors is connected via fiber-optic cable to a pair of spectroradiometers housed indoors, so the entire spectral range is measured simultaneously for both spectroradiometers. For the typical shadowband measurement, the spectroradiometers are operated with one measurement per second, but the entire shadowband sequence takes about 20 seconds, so this is the measurement interval for the irradiances. The SASHE operating sequence is configurable and supports alternate programmed sequences as a function of solar zenith angle. For example, it currently employs different sequences for high sun angles, low sun angles, and twilight conditions when the sun is below the horizon but the sky is not yet fully dark. It also includes a mode where visible spectra are collected rapidly while the band is moved over a range of near-sun angles to characterize the forward-scattered radiation. The SASHE data are preliminarily calibrated through comparison with calibrated lamps. The accuracy of irradiance produced by the SASHE is expected to be better than ±5%, which includes calibration and instrument stability errors. Under suitably uniform atmospheric conditions, higher calibration accuracy and precisions (±1%) can be obtained when the responsivity is tied to the solar extraterrestrial irradiance via Langley regression plots. This approach is recommended when high-precision measurements of optical depth are required.
DOI: 10.5439/1984396
title: sashevislowsun (a0)

description: The shortwave array spectroradiometer—hemispheric (SASHE) uses a hemispheric spectralon diffuser and rotating shadowband similar to the MFRSR and RSS instruments, so it also provides spectrally resolved, direct-normal, diffuse-horizontal, and total-horizontal irradiances, and can be calibrated in situ via Langley regression. The SASHE incorporates two Avantes fiber-coupled spectroradiometers (Avaspec ULS 2048 CCD and Avaspec NIR256-1.7) for visible and near-infrared detection in the wavelength range 350-1700 nm. The spectral resolution is 2.4 nm for the ULS 2048 CCD and 6 nm for the NIR256-1.7. Like the SWS and SASZE, an external collector mounted outdoors is connected via fiber-optic cable to a pair of spectroradiometers housed indoors, so the entire spectral range is measured simultaneously for both spectroradiometers. For the typical shadowband measurement, the spectroradiometers are operated with one measurement per second, but the entire shadowband sequence takes about 20 seconds, so this is the measurement interval for the irradiances. The SASHE operating sequence is configurable and supports alternate programmed sequences as a function of solar zenith angle. For example, it currently employs different sequences for high sun angles, low sun angles, and twilight conditions when the sun is below the horizon but the sky is not yet fully dark. It also includes a mode where visible spectra are collected rapidly while the band is moved over a range of near-sun angles to characterize the forward-scattered radiation. The SASHE data are preliminarily calibrated through comparison with calibrated lamps. The accuracy of irradiance produced by the SASHE is expected to be better than ±5%, which includes calibration and instrument stability errors. Under suitably uniform atmospheric conditions, higher calibration accuracy and precisions (±1%) can be obtained when the responsivity is tied to the solar extraterrestrial irradiance via Langley regression plots. This approach is recommended when high-precision measurements of optical depth are required.
DOI: 10.5439/1984399
title: sashevishisun (a0)

description: The shortwave array spectroradiometer—hemispheric (SASHE) uses a hemispheric spectralon diffuser and rotating shadowband similar to the MFRSR and RSS instruments, so it also provides spectrally resolved, direct-normal, diffuse-horizontal, and total-horizontal irradiances, and can be calibrated in situ via Langley regression. The SASHE incorporates two Avantes fiber-coupled spectroradiometers (Avaspec ULS 2048 CCD and Avaspec NIR256-1.7) for visible and near-infrared detection in the wavelength range 350-1700 nm. The spectral resolution is 2.4 nm for the ULS 2048 CCD and 6 nm for the NIR256-1.7. Like the SWS and SASZE, an external collector mounted outdoors is connected via fiber-optic cable to a pair of spectroradiometers housed indoors, so the entire spectral range is measured simultaneously for both spectroradiometers. For the typical shadowband measurement, the spectroradiometers are operated with one measurement per second, but the entire shadowband sequence takes about 20 seconds, so this is the measurement interval for the irradiances. The SASHE operating sequence is configurable and supports alternate programmed sequences as a function of solar zenith angle. For example, it currently employs different sequences for high sun angles, low sun angles, and twilight conditions when the sun is below the horizon but the sky is not yet fully dark. It also includes a mode where visible spectra are collected rapidly while the band is moved over a range of near-sun angles to characterize the forward-scattered radiation. The SASHE data are preliminarily calibrated through comparison with calibrated lamps. The accuracy of irradiance produced by the SASHE is expected to be better than ±5%, which includes calibration and instrument stability errors. Under suitably uniform atmospheric conditions, higher calibration accuracy and precisions (±1%) can be obtained when the responsivity is tied to the solar extraterrestrial irradiance via Langley regression plots. This approach is recommended when high-precision measurements of optical depth are required.
DOI: 10.5439/1984400
title: sashenirhisun (a0)

description: The shortwave array spectroradiometer—hemispheric (SASHE) uses a hemispheric spectralon diffuser and rotating shadowband similar to the MFRSR and RSS instruments, so it also provides spectrally resolved, direct-normal, diffuse-horizontal, and total-horizontal irradiances, and can be calibrated in situ via Langley regression. The SASHE incorporates two Avantes fiber-coupled spectroradiometers (Avaspec ULS 2048 CCD and Avaspec NIR256-1.7) for visible and near-infrared detection in the wavelength range 350-1700 nm. The spectral resolution is 2.4 nm for the ULS 2048 CCD and 6 nm for the NIR256-1.7. Like the SWS and SASZE, an external collector mounted outdoors is connected via fiber-optic cable to a pair of spectroradiometers housed indoors, so the entire spectral range is measured simultaneously for both spectroradiometers. For the typical shadowband measurement, the spectroradiometers are operated with one measurement per second, but the entire shadowband sequence takes about 20 seconds, so this is the measurement interval for the irradiances. The SASHE operating sequence is configurable and supports alternate programmed sequences as a function of solar zenith angle. For example, it currently employs different sequences for high sun angles, low sun angles, and twilight conditions when the sun is below the horizon but the sky is not yet fully dark. It also includes a mode where visible spectra are collected rapidly while the band is moved over a range of near-sun angles to characterize the forward-scattered radiation. The SASHE data are preliminarily calibrated through comparison with calibrated lamps. The accuracy of irradiance produced by the SASHE is expected to be better than ±5%, which includes calibration and instrument stability errors. Under suitably uniform atmospheric conditions, higher calibration accuracy and precisions (±1%) can be obtained when the responsivity is tied to the solar extraterrestrial irradiance via Langley regression plots. This approach is recommended when high-precision measurements of optical depth are required.
DOI: 10.25345/c5r49gk7x
title: MassIVE MSV000092149 - Distinct dephosphorylation site signatures of PP1 and PP2A-B55 coordinate mitotic exit.
title: Mitotic exit requires extensive dephosphorylation of Ser/Thr residues by the PP1 and PP2A-B55 protein phosphatases in human cells. Several aspects of this are poorly understood including specific substrates and determinants of phosphatase specificity. Here we develop a novel in vitro assay, MRBLE-dephos, that allows multiplexing of dephosphorylation reactions to determine phosphatase specificity. Using MRBLE-dephos, we establish amino acid preferences of the residues surrounding the phosphorylation site for PP1 and PP2A-B55, which reveals common and unique preferences for the two phosphatases. We use specific inhibition of PP1 and PP2A-B55 in mitotic exit lysates coupled with quantitative phosphoproteomics to identify more than 2000 regulated phosphorylation sites and integrate this with mitotic interactomes to obtain a comprehensive map of mitotic dephosphorylation events. Importantly, the sites dephosphorylated during mitotic exit reveal key signatures that are consistent with the MRBLE-dephos results. We use these insights to specifically alter INCENP dephosphorylation kinetics at mitotic exit resulting in defective cytokinesis underscoring the biological relevance of our determined specificity principles. Finally, we provide a comprehensive characterization of PP1 binding motifs and show how these can shape dephosphorylation and how PP1 primes its own association with these motifs at mitotic exit. Collectively we provide a framework for understanding mitotic exit regulation by dephosphorylation and novel approaches to dissect protein phosphatase specificity.
DOI: 10.6084/m9.figshare.23504793
title: Research data Each Group Group 1 (adding Sylimarin) Group 2 (adding UC-MSC) Group 3 (adding Sylimarin and UC-MSC) Group 4 (Control Negative)

description: Research data Each Group Group 1 (adding Sylimarin) Group 2 (adding UC-MSC) Group 3 (adding Sylimarin and UC-MSC) Group 4 (Control Negative)
DOI: 10.6084/m9.figshare.23504793.v1
title: Research data Each Group Group 1 (adding Sylimarin) Group 2 (adding UC-MSC) Group 3 (adding Sylimarin and UC-MSC) Group 4 (Control Negative)

description: Research data Each Group Group 1 (adding Sylimarin) Group 2 (adding UC-MSC) Group 3 (adding Sylimarin and UC-MSC) Group 4 (Control Negative)
DOI: 10.6084/m9.figshare.23504694.v1
title: <strong>Observed ocean surface albedo from a fixed offshore platform</strong>

description: The ocean surface albedo (OSA) is an important parameter in numerical ocean models and air‒sea heat flux calculations. Radiation observations were conducted to study the OSA in the northern South China Sea using a fixed offshore tower-based platform. The platform was located at 21.44° N, 111.39° E, with an average water depth of approximately 16 m. It consisted of a main tower and two auxiliary towers. The auxiliary towers were approximately 6 m from the main tower and their lower edges were approximately 6 m from the mean sea surface. A four-component net radiometer (CNR4) was installed on the lower edge of the southeast auxiliary tower through a 2-m long boom to simultaneously measure the upward and downward broadband solar radiation having spectral bands between 305 and 2800 nm. A bottom-mounted Nortek acoustic Doppler current profiler was used to measure surface waves. Other ancillary meteorological instruments were used to measure meteorological parameters, including wind speed and water vapor pressure. The observation period lasted from September 2017 to December 2018. The measured broadband radiation was collected in 30-min segments. To obtain an accurate and reliable radiation dataset, three specific types of data were removed from the dataset: (1) local afternoon data; (2) data with solar altitude angles &lt; 10°; (3) data with downward solar radiation of &lt; 30 W m−2. After this quality control, 2433 segments of data can be used to study the OSA.
DOI: 10.6084/m9.figshare.23504874
title: EDB databases EDB_Ncyc: Database of nitrogen cycling related genes EDB_DHG: Database of reductive dehalogenation genes

description: This project contains items of various databases with regards of environmental management efforts. Updating in progress.
DOI: 10.6084/m9.figshare.23504694.v2
title: <strong>Observed ocean surface albedo from a fixed offshore platform</strong>

description: The ocean surface albedo (OSA) is an important parameter in numerical ocean models and air‒sea heat flux calculations. Radiation observations were conducted to study the OSA in the northern South China Sea using a fixed offshore tower-based platform. The platform was located at 21.44° N, 111.39° E, with an average water depth of approximately 16 m. It consisted of a main tower and two auxiliary towers. The auxiliary towers were approximately 6 m from the main tower and their lower edges were approximately 6 m from the mean sea surface. A four-component net radiometer (CNR4) was installed on the lower edge of the southeast auxiliary tower through a 2-m long boom to simultaneously measure the upward and downward broadband solar radiation having spectral bands between 305 and 2800 nm. A bottom-mounted Nortek acoustic Doppler current profiler was used to measure surface waves. Other ancillary meteorological instruments were used to measure meteorological parameters, including wind speed and water vapor pressure. The observation period lasted from September 2017 to December 2018. The measured broadband radiation was collected in 30-min segments. To obtain an accurate and reliable radiation dataset, three specific types of data were removed from the dataset: (1) local afternoon data; (2) data with solar altitude angles &lt; 10°; (3) data with downward solar radiation of &lt; 30 W m−2. After this quality control, 2433 segments of data can be used to study the OSA.
DOI: 10.3886/e113090v1-139417
title: Replication data for: Virtual Classrooms: How Online College Courses Affect Student Success

description: Online college courses are a rapidly expanding feature of higher education, yet little research identifies their effects relative to traditional in-person classes. Using an instrumental variables approach, we find that taking a course online, instead of in-person, reduces student success and progress in college. Grades are lower both for the course taken online and in future courses. Students are less likely to remain enrolled at the university. These estimates are local average treatment effects for students with access to both online and in-person options; for other students, online classes may be the only option for accessing college-level courses.
DOI: 10.5281/zenodo.8031105
title: Contrasting response of the water use efficiency to precipitation changes between the alpine meadow and alpine steppe over the Tibetan Plateau

description: The file of AlpineGrassland_GrowingSeason_WUE is dataset of the growing season water use efficiency of alpine grassland over the tibetan plateau during 1982-2014.
DOI: 10.5281/zenodo.8031104
title: Contrasting response of the water use efficiency to precipitation changes between the alpine meadow and alpine steppe over the Tibetan Plateau

description: The file of AlpineGrassland_GrowingSeason_WUE is dataset of the growing season water use efficiency of alpine grassland over the tibetan plateau during 1982-2014.