cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1yyfq1
title: CCDC 1815754: Experimental Crystal Structure Determination

description: Related Article: Thomas Philipp Zimmermann, Thomas Limpke, Nicole Orth, Alicja Franke, Anja Stammler, Hartmut Bögge, Stephan Walleck, Ivana Ivanovic-Burmazovic, Thorsten Glaser|2018|Inorg.Chem.|57|10457|doi:10.1021/acs.inorgchem.8b01831
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z5h9y
title: CCDC 1822530: Experimental Crystal Structure Determination

description: Related Article: Anastasiya M. Penkal', Dmitry I. D'yachihin, Nikolay V. Somov, Ekaterina S. Shchegravina, Ivan D. Grishin|2018|J.Organomet.Chem.|872|63|doi:10.1016/j.jorganchem.2018.07.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1z6kzq
title: CCDC 1823574: Experimental Crystal Structure Determination

description: Related Article: Asha P and Sukhendu Mandal|2018|Cryst.Growth Des.|18|4937|doi:10.1021/acs.cgd.8b00243
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5258/soton/wp00550
title: Macao 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00551
title: Cyprus 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00552
title: Democratic People's Republic of Korea 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00553
title: Georgia 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5517/ccdc.csd.cc1pbk1m
title: CCDC 1559270: Experimental Crystal Structure Determination

description: Related Article: Anastasiya M. Penkal', Dmitry I. D'yachihin, Nikolay V. Somov, Ekaterina S. Shchegravina, Ivan D. Grishin|2018|J.Organomet.Chem.|872|63|doi:10.1016/j.jorganchem.2018.07.002
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5886/dpabji
title: Systématique, biogéographie et diversification du genre Crudia (Leguminosae, Detarioideae)

description: In the subfamily Detarioideae (Leguminosae), the genus Crudia Schreb. shows an unusual pantropical distribution and high species richness compared to closely related genera. Crudia species, spread throughout South America, West Africa and Southeastern Asia, have been the focus of independent taxonomic studies conducted by several consecutive authors. To date, however, the evolution and biogeographic history of this genus remain poorly understood. We propose a multidisciplinary approach to study this poorly known genus and to improve our understanding of its evolutionary history.
This dataset is the sampling used for this project, with link to specific specimens and sequences (in GenBank).
DOI: 10.5258/soton/wp00554
title: India 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00555
title: Indonesia 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00556
title: Iran 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00557
title: Iraq 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00558
title: Israel 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00559
title: Japan 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00560
title: Jordan 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00561
title: Kazakhstan 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00562
title: Kuwait 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00563
title: Kyrgyzstan 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00564
title: Lao People's Democratic Republic 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.17632/2m7d24f4fn.1
title: Purification, Characterzation indentificationof 3-hydroxy-4-methoxy benzal acrolein―An Intermediate of Advantame

description: C-NMR data;H-NMR data;HPLC data;IR data;MS data; UV data.
DOI: 10.5258/soton/wp00565
title: Lebanon 1km Births

description: Version 2.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00566
title: Malaysia 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00567
title: Maldives 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.5258/soton/wp00568
title: Mongolia 1km Births

description: Version 1.0 2015 estimates of numbers of live births per grid square, with national totals adjusted to match UN national estimates on numbers of live births (http://esa.un.org/wpp/).
DOI: 10.17632/2cz2str9r4.1
title: Short Term In Vivo Evaluation of Nitric Oxide Generating Artificial Lung in Sheep

description: This dataset contains raw data from the monitoring of the physiological parameters of sheep subjects as well as the device parameters of an artificial lung attached in VV ECMO configuration. Two devices, a nitric oxide (NO) generating device and a control device of polymenthylpentene (PMP) were attached in parallel with a double lumen cannula in the right jugular. The data collected showed that there was less clot formation in the NO generating devices as well as a prolonged device lifespan when compared to the control after performing analysis with SPSS using a mixed model analysis with a Bonferroni-corrected confidence interval with each set as the subject variable, and time as the fixed, repeated-measure variable. A p value &lt;0.05 is regarded as significant.
DOI: 10.17632/mpx25d9jrx.1
title: Modelling norovirus transmission and vaccination

description: MATLAB code introduction ======================== This code was produced by KAMG and produces the figures shown in Gaythorpe, Trotter and Conlan (2018). DOI 10.1016/j.vaccine.2018.07.053 Description =========== NoroModel --------- Original model description and functions for simulating the model and calculating the likelihood etc. This also contains inputs such as the start conditions and seasonal offset, omega2. SMC functions ------------ This contains the final form of the model calibration SMC script where the parameters to be estimated are log-transformed to improve estimation efficiency. SMC output --- This contains older versions of the SMC procedure as well as "PARTICLE\_OUT.mat" which is the output used to generate the results in the accompanying paper. There are also scripts to produce plots of the fit and inference characteristics. Scenarios --------- Vaccination scenarios and output. This contains scripts to calculate impact and plot vaccination characteristics.
DOI: 10.17632/zyh2zkf3jw.1
title: Some useful optimisations for unstructured computational fluid dynamics codes on multicore and manycore architectures

description: This paper presents a number of optimisations for improving the performance of unstructured computational fluid dynamics codes on multicore and manycore architectures such as the Intel Sandy Bridge, Broadwell and Skylake CPUs and the Intel Xeon Phi Knights Corner and Knights Landing manycore processors. We discuss and demonstrate their implementation in two distinct classes of computational kernels: face-based loops represented by the computation of fluxes and cell-based loops representing updates to state vectors. We present the importance of making efficient use of the underlying vector units in both classes of computational kernels with special emphasis on the changes required for vectorizing face-based loops and their intrinsic indirect and irregular access patterns. We demonstrate the advantage of different data layouts for cell-centred as well as face data structures and architectural specific optimisations for improving the performance of gather and scatter operations which are prevalent in unstructured mesh applications. The implementation of a software prefetching strategy based on auto-tuning is also shown along with an empirical evaluation on the importance of multithreading for in-order architectures such as Knights Corner. We explore the various memory modes available on the Intel Xeon Phi Knights Landing architecture and present an approach whereby both traditional DRAM as well as MCDRAM interfaces are exploited for maximum performance. We obtain significant full application speed-ups between 2.8-3X across the multicore CPUs in two-socket node configurations, 8.6X on the Intel Xeon Phi Knights Corner coprocessor and 5.6X on the Intel Xeon Phi Knights Landing processor in an unstructured finite volume CFD code representative in size and complexity to an industrial application.
DOI: 10.17632/4s97scjk3g.1
title: Combining hierarchical distance sampling with occupancy modeling to measure population density from indirect signs

description: Text S1. An R Markdown script in ‘html’ format complete with step-by-step data analysis, model results, and simulations. The script also includes comments and guidelines for researchers to fit their own data. Data S1. All data for the analysis of Gopher Tortoise burrow surveys. Data includes transect observations, transect covariates, survey covariates, and burrow occupancy data. Additionally, the 50 m x 50 m grid covariates used to predict Gopher Tortoise density is included. Table S1. Covariates used in modelling and their predicted effects. Check marks for each location correspond to whether the habitat was present in that location. Table S2. Estimates of signal and animal density and abundance. LCL, Lower Confidence Limits; UCL, Upper Confidence Limit; SE, Standard Error; CV, Coefficient of Variation
DOI: 10.17632/65fkdzt9x5.3
title: Encoding growth factor identity in the temporal dynamics of FoxO3 under the combinatorial control of ERK and AKT Kinases

description: Sampattavanich et al., Cell Systems (2018) This data repository provides raw datasets for accompanying the paper, "Encoding growth factor identity in the temporal dynamics of FoxO3 under combinatorial regulation by ERK and Akt" by Sampattavanich et al., Cell Systems (2018) Synopsis: Forkhead box O3 transcription factor (FoxO3) functions as an integrative node for diverse upstream signaling networks, and has been implicated in a number of biological processes including cycle arrest, apoptosis, oxidative stress, cell migration and cell metabolism. Regulators of FoxO3, including phosphorylation, energy stress, genotoxic stress, and cytokines, control its abundance, subcellular localization and DNA-binding capacity. In this paper we study how the identities and concentrations of growth factors are encoded in the dynamics of FoxO3 activation. Transcription factors like FoxO3 often switch between on and off states repeatedly over the course of a 12-24 hours period. Immunoblotting and similar methods can obscure this switching behavior due to asynchronicity between cells. In contrast, our use of time-lapse microscopy of fluorescent reporter proteins reveals that FoxO3 exhibits complex low wavelength and pulsatile translocation dynamics responsive to combinatorial control by ERK and Akt with the potential to encode the identities and concentrations of multiple extracellular growth factors. Dataset Content: This dataset includes raw datasets either in .MAT, or .CSV for regenerating all figures in the publication. These folders should be placed inside the /rawdata folder in the git repository folder so that the reader can generate these figures on their own. /parentalVSreporter - This dataset is used to regenerate fig.1B, S1B and S1C. /Workspace - This dataset is important for all fPCA and pulse score analysis in Fig.1-6 /dualsensors - This dataset is used to regenerate Fig.6B /western - This dataset is used to regenerate Fig.1C and S1G /fixedcell - This dataset is used to regenerate Fig.7 /Time-lapse video - This folder gives video files of the main dataset for Fig.1-2, varying different growth factors at various dosing, with different drug pre-treatment. To learn more about this data, please also visit the accompanying HMS LINCS website shown below.
DOI: 10.17632/g23hxn8d4s.1
title: On the road again: Assessing the use of roadsides as wildlife corridors for Gopher Tortoises (Gopherus polyphemus)

description: Tortoise and Telemetry data along with the R script used to trim and analyze the data.
DOI: 10.17632/mwmhh766fc.1
title: Electronic nose dataset for beef quality monitoring under an uncontrolled environment

description: The 500 grams of fresh extra-lean beef was tested using an e-nose in uncontrolled environment condition. Ten features correspond to ten Metal-Oxide Semiconductor gas sensor as well as temperature and humidity. The discrete and continuous labels represent beef quality and microbial population in the beef sample, respectively. This dataset is distributed in comma-separated value (csv). The number of instance is 4553. The first row contains the column header as follows: • Minute: the time of each instance in minutes; • Class: discrete label of beef quality [“excellent”, “good”, “acceptable”, “spoiled”]; • TVC: continuous label of microbial population; • MQ_: the sensor resistance value of a particular gas sensor; • Humidity: relative humidity (%) in the sample chamber; • Temperature: temperature in the sample chamber. The dataset is sorted ascendingly by column “minute” to represent the time series data in beef quality monitoring.
DOI: 10.17632/tdg2bzcc39.1
title: Nutrient and dose dependent microbiome-mediated protection against a plant pathogen. Berg & Koskella

description: Plant-associated microbial communities can promote plant nutrient uptake, growth, and resistance to pathogens. Host resistance to infection can increase directly through commensal-pathogen interactions or indirectly through priming of host defenses, and the specific mechanisms are currently best described for rhizosphere bacteria. For example, Arabidopsis plants infected with the foliar pathogen, Pseudomonas syringae pathovar tomato (Pst), increase their root secretion of malate, which attracts Bacillus subtillis to the roots and leads to a stronger host immune response against Pst. While there are numerous examples of individual defensive symbionts, it is less clear whether this type of protection can be an emergent property of whole microbial communities. In particular, relatively little is known about if and how the presence of phyllosphere (above ground) microbial communities can increase host resistance against pathogens. In this study, we examined the ability of augmented tomato phyllosphere microbiomes to confer resistance against the causal agent of bacterial speck, Pst. Across 5 independent experiments, the phyllosphere microbiome was found to decrease pathogen colonization. Furthermore, the dose of commensal bacteria applied affected the degree of protection conferred, and although the effect is dependent on microbial composition, it is not clearly related to overall diversity. Finally, our results suggest that microbial resource community dynamics play an important role in protection, as the addition of fertilizer abolished the observed microbiome-mediated protection. Together, these results have clear relevance to microbiome-mediated protection within agricultural settings, and the use of plant probiotics to increase disease resistance.
DOI: 10.15472/u6spz5
title: Aves de Risaralda

description: La información de línea base sobre la composición faunística de una región permite la implementación de prácticas de manejo y conservación efectivas. El departamento de Risaralda está localizado en el centro-occidente del país, limita al norte con el departamento de Antioquia, al noroccidente con Chocó, al nororiente con Caldas, al sur con Quindío y Valle del Cauca y al oriente con Tolima. Tiene una extensión de 4140 km2 y está conformado por 14 municipios: Pueblo Rico, Mistrató, Guática y Quinchía en el Norte; Belén de Umbría, Apía, Santuario, La Celia y Balboa en la zona Central y Virginia, Marsella, Pereira, Dosquebradas y Santa Rosa de Cabal en el Sur. La Cordillera Central y Occidental rodean las zonas bajas cuyas alturas son inferiores a 2000 msnm.; Por otra parte, la zonas de mayor altura en la Cordillera Central son el nevado de Santa Isabel y el nevado del Quindío, y en la cordillera Occidental el cerro Tamaná (ACNUR, 2006). La información consignada en este recurso proviene de los muestreos realizados para el establecimiento de los planes de manejo e inventarios de fauna de las Áreas Protegidas y Reservas Naturales de la Sociedad Civil del departamento entre el año 1985 y 2014, realizados por la CARDER con el apoyo del INDERENA, Parques Nacionales Naturales, Unidad de Investigaciones Federico Medem, Federación Comunitaria para el Ordenamiento y Manejo de las Áreas Protegidas, Instituto de Ciencias Naturales de la Universidad Nacional de Colombia, Asociación Palo Verde, Fundación Ecoandina de Risaralda y Wildlife Conservation Society.
DOI: 10.17632/pt8sh92g6m.1
title: Dataset for: The Price of Byproducts: Distinguishing Co-products from Waste using the Rectangular Choice-of-Technologies Model

description: This dataset include the both the scenario datasets and the Python and Julia code for the RCOT model with byproducts, associated with the publication "The Price of Byproducts: Distinguishing Co-products from Waste using the Rectangular Choice-of-Technologies Model" by Springer and Schmitt in Resources, Conservation, and Recycling. RCOT with byproducts is linear programming model based upon previous versions of RCOT and the World Trade Model. This version includes the option to specify byproducts for each sector and account for any byproducts that are not used as waste. It builds upon the RCOT model and includes bilateral trade.
DOI: 10.17632/t9bbwtg2mk.1
title: Research Data

description: The research date contains DNA information about subjects therefore due to confidentiality data are not published. All data are stored in the Department of Pathology and Physiology at Faculty of Medicine, Masaryk University in Brno Czech Republic and are available on request.
DOI: 10.17632/vf53t5vb8h.1
title: Original Blots for the Manuscript CELL-REPORTS-D-18-00284R2, Drusian et al, Cell reports, 2018

description: Scans of the original western blots before cropping. Each panel refers to a specific figure indicated in the file.
DOI: 10.15156/bio/sh0870864.10fu
title: SH0870864.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.