cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ghsk7e
title: Occurrence Download

description: A dataset containing 174837839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alectoria fallacina Motyka, Aletris farinosa L., Alosa aestivalis (Mitchill, 1814), Amauropelta nevadensis (Baker) S.E.Fawc. & A.R.Sm., Amblyscirtes oslari (Skinner, 1899), Amelanchier amabilis Wiegand, Amelanchier nantucketensis E.P.Bicknell, Ammannia robusta Heer ex Regel, Amygdalaria elegantior (H.Magn.) Hertel & Brodo, Anacampsis lupinella Busck, 1901, Anaptychia elbursiana (Szatala) Poelt, 1966, Animalia, Andropogon hallii Hack., Anguilla rostrata (Lesueur, 1817), Anguispira kochi kochi, Antennaria corymbosa E.E.Nelson, Antennaria flagellaris A.Gray, Antennaria plantaginifolia (L.) Hook., Anthoceros fusiformis Austin, Antrozous pallidus (LeConte, 1856), Anzia colpodes (Ach.) Stizenb., Apamea sordens sableana Mikkola, 2009)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 },
 "Country is Canada",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 32000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 174837839 records from 1238 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069396-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34770/me8y-8k48
title: Data for "The role of fruitless in specifying courtship behaviors across divergent Drosophila species"

description: These files contain code used to segment D. virilis acoustic duets,
 quantification of courtship behaviors during acoustic duets, and
 measurements of duet song features.
DOI: 10.6084/m9.figshare.26603845.v1
title: Additional file 1 of Third delay and associated factors among women who gave birth at public health facilities of Gurage zone, southern Ethiopia

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26603845
title: Additional file 1 of Third delay and associated factors among women who gave birth at public health facilities of Gurage zone, southern Ethiopia

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.26603725
title: Additional file 1 of Age-related gene expression signatures from limb skeletal muscles and the diaphragm in mice and rats reveal common and species-specific changes

description: Additional file 1: Table S1. Number of samples for individual muscles in male rats and male and female mice. Number of samples corresponds to the number of animals. E.g. 12 muscles are collected from 12 animals. Table S2. Fold change and adjusted p values of age-related genes in skeletal muscles of rats and mice. Table S3. Probe and primer sequences used for RT-qPCR in mice. Highlighted genes were used as reference genes. Table S4. Probe and primer sequences used for RT-qPCR in rats. Highlighted genes were used as reference genes. Figure S1. Numbers of age-related genes under a stringent cutoff. Figure S2. Gastrocnemius, tibialis anterior and soleus muscle weights in male and female C57Bl6J mice (A, B) and male Sprague Dawley rats (C). Figure S3. Numbers of age-related genes in rat muscles, using lower animal numbers. Figure S4. Numbers of linear and logistic age-related genes in diaphragm, gastrocnemius, soleus and tibialis anterior muscles from female mice. Figure S5. Under stricter examination, rat muscles still enrich for more age-related up-regulated pathways. Figure S6. Age-related genes in male rats and male mice that are associated with immune (A) and mitochondrial (B) pathways. Figure S7. Pathways enriched by age-related genes that were shared between male and female mice. Figure S8. Under stricter examination, rat muscles still enrich for more age-related down-regulated pathways. Figure S9. Transcription factors (TFs) associated with pathways enriched by age-related genes. Figure S10. RT-qPCR validation of top five up- and down-regulated genes in skeletal muscles from male (A and B) and female (C and D) mice. Figure S11. RT-qPCR validation of top five up- and down-regulated genes in skeletal muscles from rats. Figure S12. RT-qPCR validation of transcription factors identified in mice (selected from Figure S9A). Figure S13. RT-qPCR validation of transcription factors identified in rats (selected from Figure S9B).
DOI: 10.6084/m9.figshare.26603725.v1
title: Additional file 1 of Age-related gene expression signatures from limb skeletal muscles and the diaphragm in mice and rats reveal common and species-specific changes

description: Additional file 1: Table S1. Number of samples for individual muscles in male rats and male and female mice. Number of samples corresponds to the number of animals. E.g. 12 muscles are collected from 12 animals. Table S2. Fold change and adjusted p values of age-related genes in skeletal muscles of rats and mice. Table S3. Probe and primer sequences used for RT-qPCR in mice. Highlighted genes were used as reference genes. Table S4. Probe and primer sequences used for RT-qPCR in rats. Highlighted genes were used as reference genes. Figure S1. Numbers of age-related genes under a stringent cutoff. Figure S2. Gastrocnemius, tibialis anterior and soleus muscle weights in male and female C57Bl6J mice (A, B) and male Sprague Dawley rats (C). Figure S3. Numbers of age-related genes in rat muscles, using lower animal numbers. Figure S4. Numbers of linear and logistic age-related genes in diaphragm, gastrocnemius, soleus and tibialis anterior muscles from female mice. Figure S5. Under stricter examination, rat muscles still enrich for more age-related up-regulated pathways. Figure S6. Age-related genes in male rats and male mice that are associated with immune (A) and mitochondrial (B) pathways. Figure S7. Pathways enriched by age-related genes that were shared between male and female mice. Figure S8. Under stricter examination, rat muscles still enrich for more age-related down-regulated pathways. Figure S9. Transcription factors (TFs) associated with pathways enriched by age-related genes. Figure S10. RT-qPCR validation of top five up- and down-regulated genes in skeletal muscles from male (A and B) and female (C and D) mice. Figure S11. RT-qPCR validation of top five up- and down-regulated genes in skeletal muscles from rats. Figure S12. RT-qPCR validation of transcription factors identified in mice (selected from Figure S9A). Figure S13. RT-qPCR validation of transcription factors identified in rats (selected from Figure S9B).
DOI: 10.25417/uic.26495884
title: Cache2 Focus Group Discussion Transcripts AGYW and Community Males

description: Transcripts from qualitative study of AGYW and men regarding impact of COVID19 on sexual and reproductive health
DOI: 10.6084/m9.figshare.26603827.v1
title: Additional file 1 of Does patient and public involvement impact public health decision-making? A 10 year retrospective analysis of public consultation in Brazil

description: Additional file 1. Complete database with information on demands analyzed by Conitec and characteristics of participants in public consultations.
DOI: 10.15468/dl.fzav9u
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.717601 -32.53093, 148.722092 -32.53093, 148.722092 -32.521947, 148.719846 -32.521947, 148.719846 -32.526439, 148.717601 -32.526439, 148.717601 -32.53093)), ((148.717601 -32.53093, 148.710863 -32.53093, 148.710863 -32.535422, 148.706372 -32.535422, 148.706372 -32.528685, 148.704126 -32.528685, 148.704126 -32.526439, 148.699634 -32.526439, 148.699634 -32.53093, 148.690651 -32.53093, 148.690651 -32.535422, 148.695143 -32.535422, 148.695143 -32.537668, 148.699634 -32.537668, 148.699634 -32.542159, 148.704126 -32.542159, 148.704126 -32.537668, 148.706372 -32.537668, 148.706372 -32.544405, 148.710863 -32.544405, 148.710863 -32.551143, 148.713109 -32.551143, 148.713109 -32.548897, 148.717601 -32.548897, 148.717601 -32.544405, 148.722092 -32.544405, 148.722092 -32.548897, 148.726584 -32.548897, 148.726584 -32.551143, 148.72883 -32.551143, 148.72883 -32.544405, 148.726584 -32.544405, 148.726584 -32.537668, 148.722092 -32.537668, 148.722092 -32.542159, 148.710863 -32.542159, 148.710863 -32.537668, 148.717601 -32.537668, 148.717601 -32.53093)), ((148.726584 -32.551143, 148.722092 -32.551143, 148.722092 -32.553388, 148.726584 -32.553388, 148.726584 -32.551143)))"
 ]
}

 The dataset includes 200 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066962-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxqucs
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.611273 -36.977612, 142.611273 -36.982104, 142.609027 -36.982104, 142.609027 -36.98435, 142.606782 -36.98435, 142.606782 -36.988841, 142.609027 -36.988841, 142.609027 -36.997825, 142.606782 -36.997825, 142.606782 -37.006808, 142.609027 -37.006808, 142.609027 -37.00007, 142.624748 -37.00007, 142.624748 -36.995579, 142.622502 -36.995579, 142.622502 -36.997825, 142.611273 -36.997825, 142.611273 -36.993333, 142.615765 -36.993333, 142.615765 -36.988841, 142.622502 -36.988841, 142.622502 -36.98435, 142.615765 -36.98435, 142.615765 -36.982104, 142.618011 -36.982104, 142.618011 -36.979858, 142.615765 -36.979858, 142.615765 -36.977612, 142.611273 -36.977612))"
 ]
}

 The dataset includes 92 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066963-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12773907
title: Dataset of Kantorovich-Rubinstein-Wasserstein Polytopes of Metric Spaces on up to 6 Points

description: We present a complete list of all combinatorial types of generic Kantorovich-Rubinstein-Wasserstein (KRW) polytopes associated with metric spaces on up to 6 points that are generic in the sense of Gordon and Petrov, see [1]. These polytopes and their properties are described in detail in [2].

The catalog of KRW polytopes was computed using certain regular triangulations of the full root polytope, see Section 4 in [2]. These regular triangulations were enumerated up to symmetry by Jörg Rambau using the new topcom package described in [3].

The provided data comes in three parts.



The files ending in ".result" contain the original topcom output including the specific regular triangulations of the root polytope.

There are julia files that contain these triangulations ("triangulations_x.jl"), one triangulation per line.

There is an OSCAR script ("read_triangulations.jl") that reads these triangulations and produces sample metrics associated with each of these triangulations. 


References:

[1] J. Gordon and F. Petrov: Combinatorics of the Lipschitz polytope, 2017,  Arnold Math. J. 3.2.

[2] E. Delucchi, L. Kühne, and L. Mühlherr: Combinatorial invariants of finite metric spaces and the Wasserstein arrangement, 2024, in preparation.

[3] J. Rambau: Symmetric lexicographic subset reverse search for the enumeration of circuits, cocircuits, and triangulations up to symmetry, 2023, preprint.
DOI: 10.5281/zenodo.12773906
title: Dataset of Kantorovich-Rubinstein-Wasserstein Polytopes of Metric Spaces on up to 6 Points

description: We present a complete list of all combinatorial types of generic Kantorovich-Rubinstein-Wasserstein (KRW) polytopes associated with metric spaces on up to 6 points that are generic in the sense of Gordon and Petrov, see [1]. These polytopes and their properties are described in detail in [2].

The catalog of KRW polytopes was computed using certain regular triangulations of the full root polytope, see Section 4 in [2]. These regular triangulations were enumerated up to symmetry by Jörg Rambau using the new topcom package described in [3].

The provided data comes in three parts.



The files ending in ".result" contain the original topcom output including the specific regular triangulations of the root polytope.

There are julia files that contain these triangulations ("triangulations_x.jl"), one triangulation per line.

There is an OSCAR script ("read_triangulations.jl") that reads these triangulations and produces sample metrics associated with each of these triangulations. 


References:

[1] J. Gordon and F. Petrov: Combinatorics of the Lipschitz polytope, 2017,  Arnold Math. J. 3.2.

[2] E. Delucchi, L. Kühne, and L. Mühlherr: Combinatorial invariants of finite metric spaces and the Wasserstein arrangement, 2024, in preparation.

[3] J. Rambau: Symmetric lexicographic subset reverse search for the enumeration of circuits, cocircuits, and triangulations up to symmetry, 2023, preprint.
DOI: 10.6084/m9.figshare.26603674
title: Additional file 2 of A glycoside hydrolase 12 protein from Cytospora chrysosperma triggers plant immunity but is not essential to virulence

description: Additional file 2: Table S1. GH12 members in different species.
DOI: 10.6084/m9.figshare.26603677
title: Additional file 3 of A glycoside hydrolase 12 protein from Cytospora chrysosperma triggers plant immunity but is not essential to virulence

description: Additional file 3: Table S2. Primers used in this study.
DOI: 10.6084/m9.figshare.26603674.v1
title: Additional file 2 of A glycoside hydrolase 12 protein from Cytospora chrysosperma triggers plant immunity but is not essential to virulence

description: Additional file 2: Table S1. GH12 members in different species.
DOI: 10.6084/m9.figshare.26603677.v1
title: Additional file 3 of A glycoside hydrolase 12 protein from Cytospora chrysosperma triggers plant immunity but is not essential to virulence

description: Additional file 3: Table S2. Primers used in this study.
DOI: 10.6084/m9.figshare.26569729
title: Additional file 6 of Dose-specific efficacy of adipose-derived mesenchymal stem cells in septic mice

description: Additional file 6: Table S5. List of genes involved in the phagocytosis and hypoxia responses.
DOI: 10.6084/m9.figshare.26668050
title: Additional file 1 of Study on medicinal food plants in the Gaoligongshan Biosphere Reserve, the richest biocultural diversity center in China

description: Additional file 1. Table S1. CFSI data.
DOI: 10.6084/m9.figshare.26668050.v1
title: Additional file 1 of Study on medicinal food plants in the Gaoligongshan Biosphere Reserve, the richest biocultural diversity center in China

description: Additional file 1. Table S1. CFSI data.
DOI: 10.25417/uic.26496877
title: Power Health: Anonymized focus group transcripts from men participating in a study related to menstrual health and sexual and reproductive health among women

description: Qualitative study employing focus group discussions was undertaken with community men to understand their knowledge, perceptions, and attitudes towards menstruation, menstrual health, and impact on women's sexual and reproductive health.
DOI: 10.15468/dl.zfrjqq
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "TaxonKey is Tripneustes gratilla (Linnaeus, 1758)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066964-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26668068
title: Additional file 2 of Kinase inhibitor pulldown assay (KiP) for clinical proteomics

description: Additional file 2. Comprehensive Data Compilation from Multiple Excel Spreadsheets. ExpNo_mapping_table Mapping identifier to raw files. 55Druggable_Kinases List of kinases deemed “druggable” based on available information. 47basal_luminal_specific_proteins List of additional kinases of interest based on preliminary experiments. sKiPs_counts count of Strict gene products (Mascot IonScore &gt;= 30, q-value &lt;= 0.01) corresponding to Figure 1. FunCats_mapping Mapping table to in-house protein Functional Categories corresponding to Figure 1. Dilutions_9KiP_counts Total kinase counts across dilutions (variable input) corresponding to Figure 2. Depletions_9KiP_counts Total kinase counts across depletions corresponding to Figure 2. Depletions_9KiP_individual_DDA Individual kinase values (iBAQ log transformed) for DDA data corresponding to Figure 2. Log scale. Dilutions_9KiP_individual_DDA Individual kinase values (iBAQ log transformed) for DDA data corresponding to Figures 2-3. Log scale. Dilutions_9KiP_individual_PRM Individual kinase values for PRM data corresponding to Figure 3. Linear scale. WHIM_PDX_PRM_Transitions_Sum PRM measurements for WHIM PDXs corresponding to Figure 4. Linear scale. Basal_vs_Luminal_pvalues Raw p-values across datasets for WHIM PDXs corresponding to Figure 4. DP1_POL_ClinicalSamples_PRM_zscore PRM data (log transformed and zscored) for clinical samples corresponding to Figure 5. Heavy_Peptide_summary Summary of peptides explored for use as heavy trigger peptides. WHIM_PDX_SureQuant_Transitions Transition intensities for experimental peptides, linear scale. WHIM_PDX_SureQuant_TransitionsTICnorm Transition intensities for experimental peptides, linear scale, after TIC normalization.
DOI: 10.6084/m9.figshare.26668068.v1
title: Additional file 2 of Kinase inhibitor pulldown assay (KiP) for clinical proteomics

description: Additional file 2. Comprehensive Data Compilation from Multiple Excel Spreadsheets. ExpNo_mapping_table Mapping identifier to raw files. 55Druggable_Kinases List of kinases deemed “druggable” based on available information. 47basal_luminal_specific_proteins List of additional kinases of interest based on preliminary experiments. sKiPs_counts count of Strict gene products (Mascot IonScore &gt;= 30, q-value &lt;= 0.01) corresponding to Figure 1. FunCats_mapping Mapping table to in-house protein Functional Categories corresponding to Figure 1. Dilutions_9KiP_counts Total kinase counts across dilutions (variable input) corresponding to Figure 2. Depletions_9KiP_counts Total kinase counts across depletions corresponding to Figure 2. Depletions_9KiP_individual_DDA Individual kinase values (iBAQ log transformed) for DDA data corresponding to Figure 2. Log scale. Dilutions_9KiP_individual_DDA Individual kinase values (iBAQ log transformed) for DDA data corresponding to Figures 2-3. Log scale. Dilutions_9KiP_individual_PRM Individual kinase values for PRM data corresponding to Figure 3. Linear scale. WHIM_PDX_PRM_Transitions_Sum PRM measurements for WHIM PDXs corresponding to Figure 4. Linear scale. Basal_vs_Luminal_pvalues Raw p-values across datasets for WHIM PDXs corresponding to Figure 4. DP1_POL_ClinicalSamples_PRM_zscore PRM data (log transformed and zscored) for clinical samples corresponding to Figure 5. Heavy_Peptide_summary Summary of peptides explored for use as heavy trigger peptides. WHIM_PDX_SureQuant_Transitions Transition intensities for experimental peptides, linear scale. WHIM_PDX_SureQuant_TransitionsTICnorm Transition intensities for experimental peptides, linear scale, after TIC normalization.
DOI: 10.15468/dl.de5bst
title: Occurrence Download

description: A dataset containing 3834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Human Observation, Occurrence evidence, Specimen)"
 ]
 }
 },
 "TaxonKey is Thesium L."
 ]
}

 The dataset includes 3834 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066965-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26668071
title: Additional file 1 of Empirical evaluation of the strength and deformation characteristics of natural and synthetic gas hydrate-bearing sediments with different ranges of porosity, hydrate saturation, effective stress, and strain rate

description: Additional file 1. Data summary table of triaxial test results for gas hydrate-bearing sediments.
DOI: 10.6084/m9.figshare.26668071.v1
title: Additional file 1 of Empirical evaluation of the strength and deformation characteristics of natural and synthetic gas hydrate-bearing sediments with different ranges of porosity, hydrate saturation, effective stress, and strain rate

description: Additional file 1. Data summary table of triaxial test results for gas hydrate-bearing sediments.
DOI: 10.6084/m9.figshare.26668077
title: Additional file 3 of Empirical evaluation of the strength and deformation characteristics of natural and synthetic gas hydrate-bearing sediments with different ranges of porosity, hydrate saturation, effective stress, and strain rate

description: Additional file 3. Borehole physical property data sheet for AT1-CW2.
DOI: 10.6084/m9.figshare.26668077.v1
title: Additional file 3 of Empirical evaluation of the strength and deformation characteristics of natural and synthetic gas hydrate-bearing sediments with different ranges of porosity, hydrate saturation, effective stress, and strain rate

description: Additional file 3. Borehole physical property data sheet for AT1-CW2.
DOI: 10.6084/m9.figshare.26668089
title: Additional file 4 of Support interventions to promote health and wellbeing among women with health-related consequences following traumatic experiences linked to armed conflicts and forced migration: a scoping review

description: Additional file 4. Methodological characteristics of the included reports.
DOI: 10.6084/m9.figshare.26668089.v1
title: Additional file 4 of Support interventions to promote health and wellbeing among women with health-related consequences following traumatic experiences linked to armed conflicts and forced migration: a scoping review

description: Additional file 4. Methodological characteristics of the included reports.
DOI: 10.15468/dl.gse6cq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.32234 -32.553388, 148.32234 -32.55788, 148.329077 -32.55788, 148.329077 -32.553388, 148.32234 -32.553388))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066967-240626123714530/datasets/export for details.
DOI: 10.15468/dl.3w2tsq
title: Occurrence Download

description: A dataset containing 9524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palythoa caribaeorum Duchassaing & Michelotti, 1860"
 ]
}

 The dataset includes 9524 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066966-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.