cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28193216
title: Supplementary Material for: Study on Drug–Food Thickening Agents Interactions between Warfarin and Prebiotics Used for Viscosity Adjustment

description: Introduction: Prebiotics are widely used in nutritional supplements, with water-soluble dietary fibers used as thickeners for patients with swallowing difficulties. Interactions between thickeners and medications have been reported; however, the effects of thickeners on warfarin remain unclear. Here, we examined the interaction between warfarin and thickeners through clinical and basic research studies. 
Methods: The clinical research study evaluated the effects of combining warfarin and thickeners on blood coagulation, while the basic research study measured the impact of different prebiotics and mixing with gastric and intestinal fluids on warfarin concentration.
Results: The clinical research study showed no significant differences in the patients' prothrombin time-international normalized ratio and warfarin sensitivity index (WSI) before and after the combination. However, the WSI decreased postcombination in half of the patients. Meanwhile, in the basic research study, a concentration-dependent decrease in the residual rate of warfarin was observed with xanthan gum, guar gum, and pectin. When mixed with artificial gastric and intestinal fluids, the residual rate decreased with xanthan and guar gum in gastric fluid and with pectin in intestinal fluid. 
Conclusion: Thickeners primarily composed of xanthan gum, guar gum, and pectin may reduce the effectiveness of warfarin due to drug–food interactions.
DOI: 10.7265/n5zk5dm5
title: MODIS Mosaic of Antarctica 2003-2004 (MOA2004) Image Map
DOI: 10.1594/pangaea.536260
title: Relative abundance of live (Rose Bengal stained) benthic foraminifera in the small size fraction of surface sediment off NW Africa (Table 3)
DOI: 10.1594/pangaea.669511
title: Horizon at station Cabauw

description: *** Please note: this dataset contained a tiny error: the data pair "255, 1" should have been "355, 1", i.e. at azimuth 355° the elevation angle is 1°. At azimuth 255° the elevation angle is 0. This was corrected on 2020-09-10 ***
DOI: 10.1594/pangaea.733418
title: Physical oceanography during POLARSTERN cruise ARK-XXII/2 (SPACE)
DOI: 10.1594/pangaea.742617
title: Physical oceanography during POLARSTERN cruise ARK-XII
DOI: 10.1594/pangaea.774181
title: Physical oceanography during POLARSTERN cruise ARK-XXVI/3 (TransArc)
DOI: 10.1594/wdcc/cmip5.mxelr4
title: CMIP5 simulations of the Max Planck Institute for Meteorology (MPI-M) based on the MPI-ESM-LR model: The rcp45 experiment, served by ESGF

description: Project: IPCC Assessment Report 5 and Coupled Model Intercomparison Project data sets - These data belong to two projects: 1) to the Assessment Report No 5 of the International Panel on Climate Change (IPCC-AR5) and 2) to the Coupled Model Intercomparison Project No 5 (CMIP5). CMIP5 is executed by the Program for Climate Model Diagnosis and Intercomparison (PCMDI) on behalf of the World Climate Research Programme (WCRP). Most of the data is replicated between the three data nodes at the World Data Centre for Climate (WDCC), the British Atmospheric Data Centre (BADC), and the PCMDI. The project embraces the simulations with about 30 climate models of about 20 institutes worldwide. Summary: rcp45 is an experiment of the CMIP5 - Coupled Model Intercomparison Project Phase 5 (https://pcmdi.llnl.gov/mips/cmip5). CMIP5 is meant to provide a framework for coordinated climate change experiments for the next five years and thus includes simulations for assessment in the AR5 as well as others that extend beyond the AR5. 4.1 rcp45 (4.1 RCP4.5): Future projection (2006-2100) forced by RCP4.5. RCP4.5 is a representative concentration pathway which approximately results in a radiative forcing of 4.5 W m-2 at year 2100, relative to pre-industrial conditions. RCPs are time-dependent, consistent projections of emissions and concentrations of radiatively active gases and particles. Experiment design is described in detail in https://pcmdi.llnl.gov/mips/cmip5/experiment_design.html and the list of output variables and their temporal resolutions are given in https://pcmdi.llnl.gov/mips/cmip5/datadescription.html . The output is stored in netCDF format as time series per variable in model grid spatial resolution. For more information on the Earth System model and the simulation please refer to the CIM repository.
DOI: 10.25318/1310037301-eng
title:  Overweight and obesity based on measured body mass index, by age group and sex

description: Number and percentage of Canadians aged 5 to 79 with a measured body mass index categorized as overweight or obese, by age group and sex.
DOI: 10.3334/cdiac/cli.003
title: Monthly Surface Air Temperature Time Series Area-Averaged Over the 30-Degree Latitudinal Belts of the Globe

description: The mean monthly and annual values of surface air temperature compiled by Lugina et al. have been taken mainly from the World Weather Records, Monthly Climatic Data for the World, and Meteorological Data for Individual Years over the Northern Hemisphere Excluding the USSR. These published records were supplemented with information from different national publications. In the original archive, after removal of station records believed to be nonhomogeneous or biased, 301 and 265 stations were used to determine the mean temperature for the Northern and Southern hemispheres, respectively. The new version of the station temperature archive (used for evaluation of the zonally-averaged temperatures) was created in 1995. The change to the archive was required because data from some stations became unavailable for analyses in the 1990s. During this process, special care was taken to secure homogeneity of zonally averaged time series. When a station (or a group of stations) stopped reporting, a "new" station (or group of stations) was selected in the same region, and its data for the past 50 years were collected and added to the archive. The processing (area-averaging) was organized in such a way that each time series from a new station spans the reference period (1951-1975) and the years thereafter. It was determined that the addition of the new stations had essentially no effect on the zonally-averaged values for the pre-1990 period.
DOI: 10.3334/cdiac/otg.tsm_knot
title: Hydrographic Data Report at Station KNOT
DOI: 10.5066/p13plw9s
title: Mercury, carbon and nitrogen isotope ratios in seven Great Lake fish species from 1975 to 2021

description: Atmospheric mercury (Hg) deposition, which has been declining in North America since 1985, is the preeminent delivery pathway to the Great Lakes, making them sentinels for tracking shifts in atmospheric deposition. Lake productivity is changing as a result of reductions in phosphorus inputs and habitat shifts in productivity due to invasive mussels. This has altered Hg cycling and energetic coupling within the Lakes. Seven fish species were analyzed for bulk carbon, nitrogen, and Hg isotope ratios and amino acid-specific nitrogen isotopes ratios in fish from the U.S. Environmental Protection Agency Great Lake Fish Monitoring and Surveillance Program archives (1975 – 2021) and the 1994 Lake Michigan Mass Balance to reconstruct the energetic- and Hg-source spatial and temporal trends within each lake. Data for the following fish species are included in this dataset: alewife, bloater, chub, coho salmon, lake trout, rainbow smelt, walleye.
DOI: 10.5281/zenodo.14514704
title: Double and single stranded detection of 5-methylcytosine and 5-hydroxymethylcytosine with nanopore sequencing
DOI: 10.5281/zenodo.7636454
title: L1A - Discrete airborne LiDAR transects collected by EBA in the Brazilian Amazon (Mato Grosso, Amazonas e Pará)

description: In two campaigns (2016/2017 and 2017/2018), we collected LiDAR transects across the Brazilian Amazon. Some transects were randomly distributed over the forest and secondary forest, some were randomly distributed over the deforestation arch, and others overlapped field plots to allow for model calibration. Each transect covered a minimum of 375 hectares (12.5 km x 300 m) and was surveyed by emitting full-waveform laser pulses from a Trimble Harrier 68i airborne sensor (Trimble; Sunnyvale, CA) aboard a Cessna aircraft (model 206). The average point density was set at four returns per m², the field of view was 30°, the flying altitude was 600 m, and the transect width on the ground was approximately 494 m. Global Navigation Satellite System (GNSS) data were collected on a dual-frequency receiver (L1/L2). The pulse footprint was below 30 cm, based on a divergence angle between 0.1 and 0.3 milliradians. Horizontal and vertical accuracy were controlled to be under 1 m and 0.5 m, respectively. We used the PRODES forest mask (2015) and secondary vegetation (forest regrown after complete forest clearing) from TerraClass (2014) to distribute the transects. To calibrate and validate the airborne LiDAR predictions of biomass, we intentionally overlapped some transects with field plots from 15 research partners. In 2017/2018, we complemented the expanded the transects survey improving the representation of secondary forest based on TerraClass (INPE, 2014). To calibrate and validate the airborne LiDAR predictions of biomass. The metadata about each transect is included in the shapefile hosted at Zenodo repository (https://doi.org/10.5281/zenodo.4968706). To position the transects, we randomly generated center points with X, Y coordinates and assigned a random alpha slope angle to each point. We visually inspected the start points to ensure they were within the forest or secondary vegetation mask. If the start point was not entirely within a forest, as seen by satellite image, we discarded the seed point and selected another one. For each point, we created a shapefile with a 12.5 km x 300 m polygon. For both campaigns, if there were any conflicts with the flight plan (e.g., proximity to an airport or military restrictions), the company making the flights requested repositioning it to the closest allowed area. This deposit delivers data from Mato Grosso (1 zip file), Amazonas (2 zip files) and Pará (8 zip files).
description: Data were supported by Amazon Fund (grant 14.2.0929.1) and National Academy of Sciences and US Agency for International Development (grant AID-OAA-A-11–00012).
DOI: 10.5281/zenodo.14875958
title: Fast and Accurate Blind Flexible Docking

description: The preprocessed PDBbind2020 dataset for ICLR 2025 paper "Fast and Accurate Blind Flexible Docking".

The dataset files are saved as .pt and lmdb file for the convenience of use.

We follow the same preprocessing as FABind and DynamicBind.

Paper Abstract

Molecular docking that predicts the bound structures of small molecules (ligands) to their protein targets, plays a vital role in drug discovery. However, existing docking methods often face limitations: they either overlook crucial structural changes by assuming protein rigidity or suffer from low computational efficiency due to their reliance on generative models for structure sampling. To address these challenges, we propose FABFlex, a fast and accurate regression-based multi-task learning model designed for realistic blind flexible docking scenarios, where proteins exhibit flexibility and binding pocket sites are unknown (blind). Specifically, FABFlex's architecture comprises three specialized modules working in concert: (1) A pocket prediction module that identifies potential binding sites, addressing the challenges inherent in blind docking scenarios. (2) A ligand docking module that predicts the bound (holo) structures of ligands from their unbound (apo) states. (3) A pocket docking module that forecasts the holo structures of protein pockets from their apo conformations. Notably, FABFlex incorporates an iterative update mechanism that serves as a conduit between the ligand and pocket docking modules, enabling continuous structural refinements. This approach effectively integrates the three subtasks of blind flexible docking—pocket identification, ligand conformation prediction, and protein flexibility modeling—into a unified, coherent framework. Extensive experiments on public benchmark datasets demonstrate that FABFlex not only achieves superior effectiveness in predicting accurate binding modes but also exhibits a significant speed advantage (208$\times$) compared to existing state-of-the-art methods. Our code is released at https://github.com/tmlr-group/FABFlex.
DOI: 10.5281/zenodo.14875959
title: Fast and Accurate Blind Flexible Docking

description: The preprocessed PDBbind2020 dataset for ICLR 2025 paper "Fast and Accurate Blind Flexible Docking".

The dataset files are saved as .pt and lmdb file for the convenience of use.

We follow the same preprocessing as FABind and DynamicBind.

Paper Abstract

Molecular docking that predicts the bound structures of small molecules (ligands) to their protein targets, plays a vital role in drug discovery. However, existing docking methods often face limitations: they either overlook crucial structural changes by assuming protein rigidity or suffer from low computational efficiency due to their reliance on generative models for structure sampling. To address these challenges, we propose FABFlex, a fast and accurate regression-based multi-task learning model designed for realistic blind flexible docking scenarios, where proteins exhibit flexibility and binding pocket sites are unknown (blind). Specifically, FABFlex's architecture comprises three specialized modules working in concert: (1) A pocket prediction module that identifies potential binding sites, addressing the challenges inherent in blind docking scenarios. (2) A ligand docking module that predicts the bound (holo) structures of ligands from their unbound (apo) states. (3) A pocket docking module that forecasts the holo structures of protein pockets from their apo conformations. Notably, FABFlex incorporates an iterative update mechanism that serves as a conduit between the ligand and pocket docking modules, enabling continuous structural refinements. This approach effectively integrates the three subtasks of blind flexible docking—pocket identification, ligand conformation prediction, and protein flexibility modeling—into a unified, coherent framework. Extensive experiments on public benchmark datasets demonstrate that FABFlex not only achieves superior effectiveness in predicting accurate binding modes but also exhibits a significant speed advantage (208$\times$) compared to existing state-of-the-art methods. Our code is released at https://github.com/tmlr-group/FABFlex.
DOI: 10.15468/dl.dsbeuy
title: Occurrence Download

description: A dataset containing 2573 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyptis Jacq."
 ]
}

 The dataset includes 2573 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001784-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/xeaa-c310
title: IGNN-Solver: A Graph Neural Solver for Implicit Graph Neural Networks

description: # Data Link* **Citeseer**: [Semi-Supervised Classifcation with Graph Convolutional Networks.](https://github.com/tkipf/gcn)  * **ACM**: [Heterogeneous Graph Attention Network.](https://github.com/Jhy1993/HAN)  * **BlogCatalog, Flickr**: [Co-Embedding Attributed Networks.](https://github.com/mengzaiqiao/CAN)  * **CoraFull**: [Deep Gaussian Embedding of Graphs: Unsupervised Inductive Learning via Ranking.](https://github.com/abojchevski/graph2gauss/)  * **Amazon-all**: [Implicit Graph Neural Networks](https://github.com/SwiftieH/IGNN)* **Reddit** [GRAND+: Scalable Graph Random Neural Networks](https://github.com/THUDM/GRAND-plus)* **ogbn-arxiv, ogbn-products**: [Node Property Prediction|Open Graph Benchmark](https://ogb.stanford.edu/docs/nodeprop/) * **MUTAG, PTC\_MR, COX2, PROTEINS, NCI1**: [TUDataset](https://chrsmrrs.github.io/datasets/docs/datasets/)
DOI: 10.15468/dl.yapx4r
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Trichophyton verrucosum E.Bodin"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001785-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.297mum
title: Occurrence Download

description: A dataset containing 576 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Coniosporium apollinis Sterfl."
 ]
}

 The dataset includes 576 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001786-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vc4qh6
title: Occurrence Download

description: A dataset containing 54052 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Living Specimen, Occurrence evidence, Fossil)",
 "TaxonKey is Emys orbicularis (Linnaeus, 1758)"
 ]
}

 The dataset includes 54052 records from 848 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001787-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy2mhx
title: Occurrence Download

description: A dataset containing 98038 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Euphorbia lathyris L."
 ]
}

 The dataset includes 98038 records from 808 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001788-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrqbsx
title: Occurrence Download

description: A dataset containing 3537465 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.55248 -40.72624,-70.32939 -40.72624,-70.32939 -32.25706,-73.55248 -32.25706,-73.55248 -40.72624))",
 "IucnRedListCategory is one of (CR, EN, VU, NT, LC)",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 3537465 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000832-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dsnj9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ourapteryx ebuleata (Guenée)"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048131-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-27748
title: People v. Powell transcripts, 1991 Apr. 30 - May 31

description: Mark H. Epstein, memorandum, 1991 May 7, to File, re April 30, 1991 hearing. ❧ The People of the State of California vs. Laurence M. Powell, Timothy E. Wind, Theodore J. Briseno, and Stacey C. Koon ("People v. Powell, et. al"), 1991 April 30 - 1991 May 31. PART OF A SERIES: The series pertains to the work of Munger, Tolles & Olson, the firm responsible for coordinating the activities and proceedings of the Independent Commission's legal counsel. Included are legal briefs, court transcripts, and memoranda; press releases and article clippings about the Rodney King incident and the subsequent creation of the Independent Commission; summaries of witness interviews; analyses of legislation regarding the role and purview of peace officers; work plans and outlines developed by Commission staff; draft copies developed for all sections of the Commission report; supplemental materials for the report, including a copy of the Rodney King arrest log, law enforcement literature, and public opinion surveys; materials distributed and reviewed during Commission meetings; letters of interest submitted to Chairman Christopher from prospective Commission members and organizations; and lists of bills and Commission expenditures.
DOI: 10.15468/dl.ixuso9
title: Occurrence Download

description: A dataset containing 365 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Apteryx owenii Gould, 1847"
 ]
}

 The dataset includes 365 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003038-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6uzz3k
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ghana, Côte d’Ivoire)",
 "TaxonKey is Morinda lucida Benth."
 ]
}

 The dataset includes 186 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009629-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nt39pz
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sauromalus slevini Van Denburgh, 1922"
 ]
}

 The dataset includes 30 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003038-150912100344238/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5r7rq
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphrasia yezoensis H.Hara"
 ]
}

 The dataset includes 112 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048134-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/independent-c69-27714
title: People v. Powell transcripts, 1991 Apr. 30 - May 31

description: Mark H. Epstein, memorandum, 1991 May 7, to File, re April 30, 1991 hearing. ❧ The People of the State of California vs. Laurence M. Powell, Timothy E. Wind, Theodore J. Briseno, and Stacey C. Koon ("People v. Powell, et. al"), 1991 April 30 - 1991 May 31. PART OF A SERIES: The series pertains to the work of Munger, Tolles & Olson, the firm responsible for coordinating the activities and proceedings of the Independent Commission's legal counsel. Included are legal briefs, court transcripts, and memoranda; press releases and article clippings about the Rodney King incident and the subsequent creation of the Independent Commission; summaries of witness interviews; analyses of legislation regarding the role and purview of peace officers; work plans and outlines developed by Commission staff; draft copies developed for all sections of the Commission report; supplemental materials for the report, including a copy of the Rodney King arrest log, law enforcement literature, and public opinion surveys; materials distributed and reviewed during Commission meetings; letters of interest submitted to Chairman Christopher from prospective Commission members and organizations; and lists of bills and Commission expenditures.