cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/5m201-5j370
title: Acetonema longum

description: Vegetative septa of A. longum
description: <strong>Tilt Series Date:</strong> 2011-03-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-03-28-25/3dimage_25380/</p>11mar28a_gr1_029_full.rec,  Reconstruction (Pixel Size 1.9 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11mar28a_gr1_029.mrc,  Tilt Series (Pixel Size 0.95 nm), 947.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-03-28-25/rawdata/11mar28a_gr1_029.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.44nex5
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Strabomantis anatipes [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 13 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047118-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/jyzmk-ssm18
title: Listeria Penicillin

description: Penicillin treated Listeria
description: <strong>Tilt Series Date:</strong> 2010-12-08</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Listeria monocytogenes</p>
<strong>Strain:</strong> 10403S</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -20.0 μm,  magnification: 27500x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> BHI media, incubate with penicillin for 1 hour</p>
  aba2010-12-08-1_slicer5667.jpg: REZ aba2010-12-08-1_slicer5668.jpg: Filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-12-08-1/rawdata/</p>ListeriaPenicillin081208_5.st,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        ListeriaPenicillin081208_5.rec,  Reconstruction (Pixel Size 0.0 nm), 170.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2010-12-08-1/3dimage_12958/ListeriaPenicillin081208_5.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/yc7m748sbg
title: Sample Information: Edible Oils, Used Oils, and Fuels (Malaysia, Sweden, England, Poland)

description: FTIR Analysis of Edible Oils, Used Oils, and Fuels (Malaysia, Sweden, England, Poland).
Brand Lot Number Origin
 
Smart Balance V1 Malaysia
Carotino V2 Malaysia
Red Eagle V3 Malaysia
EcoSafa V4 Malaysia
Used filtered cooking oil of V4 V5 Malaysia
Petron V6 Malaysia
Petron V7 Malaysia
Petron V8 Malaysia
Ingo V9 Sweden
Shell V10 England
NA V11 Sweden
VitaDor V12 Sweden
Orlen V13 Poland
DOI: 10.17632/yc7m748sbg.1
title: Sample Information: Edible Oils, Used Oils, and Fuels (Malaysia, Sweden, England, Poland)

description: FTIR Analysis of Edible Oils, Used Oils, and Fuels (Malaysia, Sweden, England, Poland).
Brand Lot Number Origin
 
Smart Balance V1 Malaysia
Carotino V2 Malaysia
Red Eagle V3 Malaysia
EcoSafa V4 Malaysia
Used filtered cooking oil of V4 V5 Malaysia
Petron V6 Malaysia
Petron V7 Malaysia
Petron V8 Malaysia
Ingo V9 Sweden
Shell V10 England
NA V11 Sweden
VitaDor V12 Sweden
Orlen V13 Poland
DOI: 10.15468/dl.gd5cm3
title: Occurrence Download

description: A dataset containing 4768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus salicina"
 ]
}

 The dataset includes 4768 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047116-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/dkj6g-z1406
title: CB15N, 100mM Galactose,high salt

description: Raw data files of CB15N, 100mM Galactose,high salt
description: <strong>Tilt Series Date:</strong> 2009-07-31</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> synchronized in 20x M2 salts, 100mM Galactose</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-07-31-13/rawdata/</p>09jul31a_receptorattractant_014.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09jul31a_receptorattractant_014.rec,  Reconstruction (Pixel Size 1.264 nm), 170.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/xcnb2d6rn6
title: Dataset for Classification of Forming Tool Types for Aircraft Parts Based on Neural Network Models Using CAD

description: The dataset consists of aircraft part images related to the fluid cell hydroforming process. The images were captured using CATIA from CAD data obtained from publicly available datasets and additional CAD data generated based on aircraft design guidelines. Since the features of aircraft parts are not fully revealed in 2D images, impact performance may be negatively impacted. To minimize the loss of information, the images were captured in three view types—normal view, view with hidden lines, and wireframe view—supported by the CATIA program. Additionally, two other measures were implemented: the use of isometric views and capturing each CAD model from various angles and orientations.
DOI: 10.22002/stynr-b4h43
title: CB15N,M2 buffer

description: Raw data files of CB15N,M2 buffer
description: <strong>Tilt Series Date:</strong> 2009-11-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> synchronized in M2 buffer</p>
  aba2009-11-06-4_slicer9822.jpg: filament bundle, Caulobacter crescentus
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-4/rawdata/</p>09nov06a_swarmerM2buffer_005.st,  Tilt Series (Pixel Size 0.632 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09nov06a_swarmerM2buffer_005.rec,  Reconstruction (Pixel Size 1.264 nm), 296.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2009-11-06-4/3dimage_9011/09nov06a_swarmerM2buffer_005.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/xcnb2d6rn6.2
title: Dataset for Classification of Forming Tool Types for Aircraft Parts Based on Neural Network Models Using CAD

description: The dataset consists of aircraft part images related to the fluid cell hydroforming process. The images were captured using CATIA from CAD data obtained from publicly available datasets and additional CAD data generated based on aircraft design guidelines. Since the features of aircraft parts are not fully revealed in 2D images, impact performance may be negatively impacted. To minimize the loss of information, the images were captured in three view types—normal view, view with hidden lines, and wireframe view—supported by the CATIA program. Additionally, two other measures were implemented: the use of isometric views and capturing each CAD model from various angles and orientations.
DOI: 10.22002/g8why-rjd26
title: wt tomogram data

description: Raw data files of wt tomogram data
description: <strong>Tilt Series Date:</strong> 2013-08-22</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -14.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dorit Hanein, Sanford Burnham Medical Research Inst.provided plunge-freeze sample grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-22-3/rawdata/</p>atlas10003.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-22-3/rawdata/atlas10003.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10003_part131_3.rec,  Reconstruction (Pixel Size 2.4 nm), 267.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cr8rc-zr174
title: Germinating A.longum spore

description: germinating spore, outgrowth
description: <strong>Tilt Series Date:</strong> 2010-01-12</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (55.0°, 55.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 10.0 μm,  magnification: 22x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Sample Preparation:</strong> quantifoil grid 2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2010-01-12-3/rawdata/</p>10jan12b_pos1try2_004.mrc,  Tilt Series (Pixel Size 0.0 nm), 939.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell4_full.rec,  Reconstruction (Pixel Size 0.0 nm), 748.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2010-01-12-3/3dimage_9249/cell4_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.17632/5vfhypcfy2
title: Validated Inventory Optimization Framework for E-commerce: Data & Code

description: This dataset contains the data, figures, and code accompanying our validated inventory optimization framework for e-commerce. The framework optimizes the cycle service level (CSL) under a standard (Q,R) policy, balances holding, ordering, and shortage costs, and reports a U-shaped total cost curve with a minimum around 95% CSL (fill rate ≈ 99.8%). We provide both “policy-stable” sensitivity (CSL fixed at 95%) and “re-optimized” sensitivity (CSL re-optimized under ±20% parameter shifts), as well as pooling analyses (constrained vs. unconstrained) and transshipment opportunities.
DOI: 10.17632/5vfhypcfy2.1
title: Validated Inventory Optimization Framework for E-commerce: Data & Code

description: This dataset contains the data, figures, and code accompanying our validated inventory optimization framework for e-commerce. The framework optimizes the cycle service level (CSL) under a standard (Q,R) policy, balances holding, ordering, and shortage costs, and reports a U-shaped total cost curve with a minimum around 95% CSL (fill rate ≈ 99.8%). We provide both “policy-stable” sensitivity (CSL fixed at 95%) and “re-optimized” sensitivity (CSL re-optimized under ±20% parameter shifts), as well as pooling analyses (constrained vs. unconstrained) and transshipment opportunities.
DOI: 10.22002/mq5ry-7h328
title: 25ugchloramphenicol

description: Bacteriophage contamination may exist
description: <strong>Tilt Series Date:</strong> 2013-11-28</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  psa2013-11-28-12_slicer4929.jpg: Vesicle and extracellular vesicle psa2013-11-28-12_slicer4932.jpg: Filaments
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-28-12/rawdata/</p>atlas10012.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-28-12/rawdata/atlas10012.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10012_full.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2013-11-28-12/3dimage_35194/atlas10012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/s324n-ywg21
title: AZ21

description: Caulobacter crescentus CB15N with inframe deletion of all three lytic transglycosylases
description: <strong>Tilt Series Date:</strong> 2013-09-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in PYE</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-31/rawdata/</p>CaulobacterAZ21atlas2new0007.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        CaulobacterAZ21atlas2new0007_full.rec,  Reconstruction (Pixel Size 0.96 nm), 2.9 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zr7d9-z3q62
title: Ruminococcus albus

description: cellulosome
description: <strong>Tilt Series Date:</strong> 2013-07-30</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Ruminococcus albus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown on cellulose, anaerobic</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-30-13/3dimage_29424/</p>Ralbus0013_part121_7.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ralbus0013.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-30-13/rawdata/Ralbus0013.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.5eeutj
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pelasgus marathonicus",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047119-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/qydwn-f8344
title: Thermococcus kodakarensis

description: Thermococcus kodakarensis
description: <strong>Tilt Series Date:</strong> 2014-07-15</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Thermococcus kodakarensis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
  aba2014-07-15-22_slicer6812.jpg: chemoreceptor array in Thermococcus kodakarensis aba2014-07-15-22_slicer6813.jpg: archaellum (?) in Thermococcus kodakarensis
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-07-15-22/rawdata/</p>kodakarensisB0001.mrc,  Tilt Series (Pixel Size 0.33 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-07-15-22/rawdata/kodakarensisB0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        kodakarensisB0001_full.rec,  Reconstruction (Pixel Size 1.32 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-07-15-22/3dimage_44670/kodakarensisB0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y5wsy-5cz70
title: E.coli   "strain 2619" EEEE

description: E.coli   "strain 2619" EEEE tsr receptor methylation site mutant EEEE CheA off state (CCWA)
description: <strong>Tilt Series Date:</strong> 2012-04-02</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium at 30 degrees, 1 hour lysed with Penicillin</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-31/rawdata/</p>UU2619_marchb0006.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-31/rawdata/UU2619_marchb0006.mrc"
        > <i class="download icon"></i> Download </a></p>

        UU2619_marchb0006_full.rec,  Reconstruction (Pixel Size 1.288 nm), 516.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>