cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7110323
title: Antennae sense heat stress to inhibit mating and promote escaping in <i>Drosophila</i> females

description: Environmental stress is a major factor that affects courtship behavior and evolutionary fitness. Although mature virgin females of <i>Drosophila melanogaster</i> usually accept a courting male to mate, they may not mate under stressful conditions. Above the temperature optimal for mating (20–25 °C), copulation success of <i>D. melanogaster</i> declines with increasing temperature although we observed vigorous courtship attempts by males, and no copulation takes place at temperatures over 36 °C. We attempted to identify the sensory pathway for detecting heat threat that drives a female to escape rather than to engage in mating that detects hot temperature and suppresses courtship behavior. We found that the artificial activation of warmth-sensitive neurons (‘hot cells’) in the antennal arista of females completely abrogates female copulation success even at permissive temperatures below 32 °C. Moreover, mutational loss of the GR28b.d thermoreceptor protein caused females to copulate even at 36 °C. These results indicate that antennal hot cells provide the input channel for detecting the high ambient temperature in the control of virgin female mating under stressful conditions.
DOI: 10.6084/m9.figshare.7110365.v1
title: Comparative Phylogenetic Data from Delayed trait development and the convergent evolution of shell kinesis in turtles

description: Trait data used in comparative phylogenetic analyses
DOI: 10.6084/m9.figshare.7110323.v2
title: Antennae sense heat stress to inhibit mating and promote escaping in <i>Drosophila</i> females

description: Environmental stress is a major factor that affects courtship behavior and evolutionary fitness. Although mature virgin females of <i>Drosophila melanogaster</i> usually accept a courting male to mate, they may not mate under stressful conditions. Above the temperature optimal for mating (20–25 °C), copulation success of <i>D. melanogaster</i> declines with increasing temperature although we observed vigorous courtship attempts by males, and no copulation takes place at temperatures over 36 °C. We attempted to identify the sensory pathway for detecting heat threat that drives a female to escape rather than to engage in mating that detects hot temperature and suppresses courtship behavior. We found that the artificial activation of warmth-sensitive neurons (‘hot cells’) in the antennal arista of females completely abrogates female copulation success even at permissive temperatures below 32 °C. Moreover, mutational loss of the GR28b.d thermoreceptor protein caused females to copulate even at 36 °C. These results indicate that antennal hot cells provide the input channel for detecting the high ambient temperature in the control of virgin female mating under stressful conditions.
DOI: 10.6084/m9.figshare.7110320
title: S6: Raw data underlying the disappearance models from Carrying a selfish genetic element predicts increased migration propensity in free-living wild house mice

description: The data that the disappearance models are based on, in CSV format.
DOI: 10.6084/m9.figshare.7110320.v1
title: S6: Raw data underlying the disappearance models from Carrying a selfish genetic element predicts increased migration propensity in free-living wild house mice

description: The data that the disappearance models are based on, in CSV format.
DOI: 10.6084/m9.figshare.7110323.v1
title: Antennae sense heat stress to inhibit mating and promote escaping in <i>Drosophila</i> females

description: Environmental stress is a major factor that affects courtship behavior and evolutionary fitness. Although mature virgin females of <i>Drosophila melanogaster</i> usually accept a courting male to mate, they may not mate under stressful conditions. Above the temperature optimal for mating (20–25 °C), copulation success of <i>D. melanogaster</i> declines with increasing temperature although we observed vigorous courtship attempts by males, and no copulation takes place at temperatures over 36 °C. We attempted to identify the sensory pathway for detecting heat threat that drives a female to escape rather than to engage in mating that detects hot temperature and suppresses courtship behavior. We found that the artificial activation of warmth-sensitive neurons (‘hot cells’) in the antennal arista of females completely abrogates female copulation success even at permissive temperatures below 32 °C. Moreover, mutational loss of the GR28b.d thermoreceptor protein caused females to copulate even at 36 °C. These results indicate that antennal hot cells provide the input channel for detecting the high ambient temperature in the control of virgin female mating under stressful conditions.
DOI: 10.6084/m9.figshare.7110314
title: S7: Raw data of the within-population migration models from Carrying a selfish genetic element predicts increased migration propensity in free-living wild house mice

description: The data that the within-population migration models are based on, in CSV format.
DOI: 10.6084/m9.figshare.7110314.v1
title: S7: Raw data of the within-population migration models from Carrying a selfish genetic element predicts increased migration propensity in free-living wild house mice

description: The data that the within-population migration models are based on, in CSV format.
DOI: 10.6084/m9.figshare.7110251
title: The assembled genome of hog deer

description: The de novo assembled genome sequence of hog deer. This version is used for peer review only.
DOI: 10.6084/m9.figshare.7110122
title: Bartlett & McCarley HFJ submission 2017,"No effect of cue format on automation dependence in an aided signal detection task"

description: Data files (csv), R markdown scripts (RMD), knit outputs (HTML), and README file (txt) for the three experiments.<br>
DOI: 10.6084/m9.figshare.7110122.v1
title: Bartlett & McCarley HFJ submission 2017,"No effect of cue format on automation dependence in an aided signal detection task"

description: Data files (csv), R markdown scripts (RMD), knit outputs (HTML), and README file (txt) for the three experiments.<br>
DOI: 10.6084/m9.figshare.7109828
title: Additional file 9: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S7. Genes located in first region of large sweep on chromosome X. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109825
title: MOESM1 of Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes

description: Additional file 1. Table S1. Peptide count, NSAF values, EMPAI values, spectral counts, and % sequence coverage for plasma membrane proteins identified by mass spectrometry (FDR &lt; .01).
DOI: 10.6084/m9.figshare.7109828.v1
title: Additional file 9: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S7. Genes located in first region of large sweep on chromosome X. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109825.v1
title: MOESM1 of Proteomic analysis identifies highly expressed plasma membrane proteins for detection and therapeutic targeting of specific breast cancer subtypes

description: Additional file 1. Table S1. Peptide count, NSAF values, EMPAI values, spectral counts, and % sequence coverage for plasma membrane proteins identified by mass spectrometry (FDR &lt; .01).
DOI: 10.6084/m9.figshare.7109819
title: Additional file 8: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S6. Occurring haplotypes in region 52 to 61Â Mb on chromosome X and numbers of carrier animals. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109819.v1
title: Additional file 8: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S6. Occurring haplotypes in region 52 to 61Â Mb on chromosome X and numbers of carrier animals. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109807
title: Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of filtering. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109807.v1
title: Additional file 7: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S5. Overview of SNPs in the region from 52 to 61Â Mb on chromosome X, including results of filtering. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109771
title: Additional file 5: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S4. Potentially overrepresented GO-Terms in selective sweeps. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7109771.v1
title: Additional file 5: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S4. Potentially overrepresented GO-Terms in selective sweeps. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7109753
title: Additional file 4: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S3. Putative selective sweeps with genes contained. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7109753.v1
title: Additional file 4: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S3. Putative selective sweeps with genes contained. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7109741
title: Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci with call-rateâ â Ľâ 90%, over diagonal, standard errors below diagonal. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109741.v1
title: Additional file 3: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S2. Genome-wide estimated FST values between different contrasts of breed groups for all loci with call-rateâ â Ľâ 90%, over diagonal, standard errors below diagonal. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109732
title: Additional file 2: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S1. Genome-wide estimated FST values between different contrasts of breed groups for all loci with call-rateâ â Ľâ 90%, over diagonal, standard errors below diagonal. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109732.v1
title: Additional file 2: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S1. Genome-wide estimated FST values between different contrasts of breed groups for all loci with call-rateâ â Ľâ 90%, over diagonal, standard errors below diagonal. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109726
title: Additional file 9: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S8. CHASM cancer-driver identification results for whole genes, where HUGO.symbol – HUGO gene symbol, Number.of.variants – number of variants per gene, Most.severe.sequence.ontology – most severe mutation consequence within gene, CHASM.score – CHASM score for whole gene, CHASM.composite.p.value – composite p-value for whole gene, Qvalue - CHASM.composite.p.value corrected for multiple testing with FDR method, Driver.genes – whether a gene is a driver or tumor-suppressor gene (TSG), Occurrences.in.COSMIC.by .primary.sites – organs, harboring somatic mutations in this gene in COSMIC database, Number.of.samples – number of samples with driver mutation in this gene, TCGA.Mutation.Cluster – whether a TCGA mutation cluster is present within a gene. (XLSX 186 kb)
DOI: 10.6084/m9.figshare.7109726.v1
title: Additional file 9: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S8. CHASM cancer-driver identification results for whole genes, where HUGO.symbol – HUGO gene symbol, Number.of.variants – number of variants per gene, Most.severe.sequence.ontology – most severe mutation consequence within gene, CHASM.score – CHASM score for whole gene, CHASM.composite.p.value – composite p-value for whole gene, Qvalue - CHASM.composite.p.value corrected for multiple testing with FDR method, Driver.genes – whether a gene is a driver or tumor-suppressor gene (TSG), Occurrences.in.COSMIC.by .primary.sites – organs, harboring somatic mutations in this gene in COSMIC database, Number.of.samples – number of samples with driver mutation in this gene, TCGA.Mutation.Cluster – whether a TCGA mutation cluster is present within a gene. (XLSX 186 kb)
DOI: 10.6084/m9.figshare.7109714
title: Additional file 8: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S7. EMV Cancer driver mutations according to CHASM algorithm. Chrom – chromosome number, Position – mutation position, Ref – reference base, Alt – variant base, Sample.ID – sample with mutation, HUGO.symbol – HUGO gene symbol, Protein.sequence.change – amino-acid change. CHASM.p.value – p-value for CHASM, dbSNP – identifier in dbSNP, 1000.Genomes/ ESP6500/ ExAC – allele frequencies in different exome-sequencing projects, COSMIC.ID – COSMIC identifier, Occurrences.in.COSMIC.by .primary.sites – organs, harboring somatic mutations in this gene in COSMIC database, ClinVar.Clinical.Significance – ClinVar clinical significance, Number.of.samples – number of samples with mutation, Qvalue – CHASM.p.value corrected for multiple testing with FDR method (XLSX 291 kb)
DOI: 10.6084/m9.figshare.7109714.v1
title: Additional file 8: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S7. EMV Cancer driver mutations according to CHASM algorithm. Chrom – chromosome number, Position – mutation position, Ref – reference base, Alt – variant base, Sample.ID – sample with mutation, HUGO.symbol – HUGO gene symbol, Protein.sequence.change – amino-acid change. CHASM.p.value – p-value for CHASM, dbSNP – identifier in dbSNP, 1000.Genomes/ ESP6500/ ExAC – allele frequencies in different exome-sequencing projects, COSMIC.ID – COSMIC identifier, Occurrences.in.COSMIC.by .primary.sites – organs, harboring somatic mutations in this gene in COSMIC database, ClinVar.Clinical.Significance – ClinVar clinical significance, Number.of.samples – number of samples with mutation, Qvalue – CHASM.p.value corrected for multiple testing with FDR method (XLSX 291 kb)
DOI: 10.6084/m9.figshare.7109708
title: Additional file 10: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S8. Overview of sampled breeds and descriptive statistics of the re-sequenced samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109708.v1
title: Additional file 10: of Analysis of porcine body size variation using re-sequencing data of miniature and large pigs

description: Table S8. Overview of sampled breeds and descriptive statistics of the re-sequenced samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7109699
title: Additional file 7: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S6. Functional impact of EMV on protein coding sequences. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109699.v1
title: Additional file 7: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S6. Functional impact of EMV on protein coding sequences. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109678
title: Additional file 5: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S5. Filtered variants detected in genes implicated in CRC development according to COSMIC database. Four consecutive panels describe zygosity (“GT.sample_name”), impact on protein structure and function (“ExonicFunc.sample_name”), sequencing depth (“DP.sample_name”) and genomic position (“POS.sample_name”). Each field may contain more than one entry if multiple variants were detected in one gene. Red/orange fields denotes homozygous/heterozygous variants. If one of multiple variants was homozygous given field was marked red. Primary/metastatic samples were marked yellow/red, respectively. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7109678.v1
title: Additional file 5: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S5. Filtered variants detected in genes implicated in CRC development according to COSMIC database. Four consecutive panels describe zygosity (“GT.sample_name”), impact on protein structure and function (“ExonicFunc.sample_name”), sequencing depth (“DP.sample_name”) and genomic position (“POS.sample_name”). Each field may contain more than one entry if multiple variants were detected in one gene. Red/orange fields denotes homozygous/heterozygous variants. If one of multiple variants was homozygous given field was marked red. Primary/metastatic samples were marked yellow/red, respectively. (XLSX 27 kb)
DOI: 10.6084/m9.figshare.7109663
title: MOESM9 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 9. Results of the enrichment analysis of the miRNA targets from the 15 novel miRNAs found in all four varieties.
DOI: 10.6084/m9.figshare.7109663.v1
title: MOESM9 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 9. Results of the enrichment analysis of the miRNA targets from the 15 novel miRNAs found in all four varieties.
DOI: 10.6084/m9.figshare.7109666
title: Additional file 4: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S4. Functional impact of filtered variants on protein coding sequences. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109666.v1
title: Additional file 4: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S4. Functional impact of filtered variants on protein coding sequences. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7109654
title: Additional file 3: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S3. Homozygous, exonic and nonsynonymous filtered variants that were detected in more than one patient. Column description is the same as in Additional file 2: Table S2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7109657
title: MOESM8 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 8. Output of the psRNAtarget for the prediction of novel miRNA targets.
DOI: 10.6084/m9.figshare.7109654.v1
title: Additional file 3: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S3. Homozygous, exonic and nonsynonymous filtered variants that were detected in more than one patient. Column description is the same as in Additional file 2: Table S2. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7109657.v1
title: MOESM8 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 8. Output of the psRNAtarget for the prediction of novel miRNA targets.
DOI: 10.6084/m9.figshare.7109648
title: Additional file 2: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S2. Filtered variants detected in three or more patients. Chromosome, start, end - genome coordinates of variant; Ref/Alt - reference/alternative variant sequence. GT - genotype detected in a given sample (0 - reference, 1-alternative). DP - number of high quality reads at a given position in a given patient. Func.refGene - location of variant relative to gene. Gene - symbol of a gene the given variant maps to, or names of genes the given variants maps in between. GeneDetail.refGene - refSeq gene ID or distance to nearest gene given in the “Gene” column. ExAC_XXX - frequency of the alternative variant in XXX population according to ExAC database. 1000g_all/eur - variant frequency in the 1000 Genomes Project database (total/European). esp6500siv2_all - variant frequency according to National Heart, Lung, and Blood Institute GO Exome Sequencing Project. SIFT/Polyphen2/LRT/FATHMM/RadialSVM “_pred” - prediction of variant impact on protein structure: B-benign, N-neutral, T-tolerated, D-deleterious. ICGC_Id - variant ID in ICGC database (known cancer-related variants). Heterozygous variants are marked orange, homozygous are marked red. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7109648.v1
title: Additional file 2: of Exome scale map of genetic alterations promoting metastasis in colorectal cancer

description: Table S2. Filtered variants detected in three or more patients. Chromosome, start, end - genome coordinates of variant; Ref/Alt - reference/alternative variant sequence. GT - genotype detected in a given sample (0 - reference, 1-alternative). DP - number of high quality reads at a given position in a given patient. Func.refGene - location of variant relative to gene. Gene - symbol of a gene the given variant maps to, or names of genes the given variants maps in between. GeneDetail.refGene - refSeq gene ID or distance to nearest gene given in the “Gene” column. ExAC_XXX - frequency of the alternative variant in XXX population according to ExAC database. 1000g_all/eur - variant frequency in the 1000 Genomes Project database (total/European). esp6500siv2_all - variant frequency according to National Heart, Lung, and Blood Institute GO Exome Sequencing Project. SIFT/Polyphen2/LRT/FATHMM/RadialSVM “_pred” - prediction of variant impact on protein structure: B-benign, N-neutral, T-tolerated, D-deleterious. ICGC_Id - variant ID in ICGC database (known cancer-related variants). Heterozygous variants are marked orange, homozygous are marked red. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7109645
title: MOESM6 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 6. List of the predicted novel miRNAs.
DOI: 10.6084/m9.figshare.7109642
title: MOESM5 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 5. Expression values of the conserved miRNA targets obtained by RNA-Seq data.
DOI: 10.6084/m9.figshare.7109645.v1
title: MOESM6 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 6. List of the predicted novel miRNAs.
DOI: 10.6084/m9.figshare.7109642.v1
title: MOESM5 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 5. Expression values of the conserved miRNA targets obtained by RNA-Seq data.
DOI: 10.6084/m9.figshare.7109636
title: MOESM2 of A dynamic model of lignin biosynthesis in Brachypodium distachyon

description: Additional file 2. Additional table.
DOI: 10.6084/m9.figshare.7109636.v1
title: MOESM2 of A dynamic model of lignin biosynthesis in Brachypodium distachyon

description: Additional file 2. Additional table.
DOI: 10.6084/m9.figshare.7109630
title: MOESM4 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 4. Output of the psRNAtarget for the prediction of conserved miRNA targets.
DOI: 10.6084/m9.figshare.7109630.v1
title: MOESM4 of Systematic miRNome profiling reveals differential microRNAs in transgenic maize metabolism

description: Additional file 4. Output of the psRNAtarget for the prediction of conserved miRNA targets.