cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7421753
title: Additional file 4: of The evolution of ependymin-related proteins

description: Full ependymin alignment, trimmed. Description of Data: Alignment of all 420 sequences analysed in this study, trimmed. The phylogenetic analysis was performed using this alignment. (FA 84 kb)
DOI: 10.6084/m9.figshare.7421753.v1
title: Additional file 4: of The evolution of ependymin-related proteins

description: Full ependymin alignment, trimmed. Description of Data: Alignment of all 420 sequences analysed in this study, trimmed. The phylogenetic analysis was performed using this alignment. (FA 84 kb)
DOI: 10.7284/113116
title: Singlebeam Echosounder data collected during research cruise NH1324 using a Knudsen 320B/R instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421738
title: Additional file 3: of The evolution of ependymin-related proteins

description: Full ependymin alignment, untrimmed. Description of Data: Alignment of all 420 sequences analysed in this study, untrimmed. (FA 287 kb)
DOI: 10.6084/m9.figshare.7421738.v1
title: Additional file 3: of The evolution of ependymin-related proteins

description: Full ependymin alignment, untrimmed. Description of Data: Alignment of all 420 sequences analysed in this study, untrimmed. (FA 287 kb)
DOI: 10.7284/113119
title: Winch data collected during research cruise NH1324 using a Markey DUSH-5 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113126
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NH1325 using a Hawaii UHDAS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113129
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1325 using a Furuno GP-150 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421708
title: MOESM5 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 5: Table S5. Significantly enriched gene ontology (GO) terms in the set of genes containing regulatory variants.
DOI: 10.6084/m9.figshare.7421702
title: Additional file 1: of The evolution of ependymin-related proteins

description: Distribution of EPDR genes in Eukaryota. Results of EPDR survey by species, including total number of sequences searched, number of EPDRs found, and clade membership of detected EPDRs. (XLSX 59 kb)
DOI: 10.7284/113131
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1325 using a Garmin GPS-17HVS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421702.v1
title: Additional file 1: of The evolution of ependymin-related proteins

description: Distribution of EPDR genes in Eukaryota. Results of EPDR survey by species, including total number of sequences searched, number of EPDRs found, and clade membership of detected EPDRs. (XLSX 59 kb)
DOI: 10.6084/m9.figshare.7421708.v1
title: MOESM5 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 5: Table S5. Significantly enriched gene ontology (GO) terms in the set of genes containing regulatory variants.
DOI: 10.7284/113132
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1325 using a Ashtech ADU2 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421693
title: MOESM4 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 4: Table S4. Significantly enriched gene ontology (GO) terms in the set of genes containing synonymous variants.
DOI: 10.6084/m9.figshare.7421687
title: Additional file 11: of The evolution of ependymin-related proteins

description: Sequences of all EPDR proteins analysed in this study. Description of Data: Fasta file containing protein sequences of all EPDRs used in this study, including manually curated Amphimedon queenslandica and Branchiostoma belcheri sequences. (FA 94 kb)
DOI: 10.7284/113133
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1325 using a Furuno GP-90D instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421681
title: MOESM3 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 3: Table S3. Significantly enriched gene ontology (GO) terms in the set of genes containing nonsynonymous variants.
DOI: 10.6084/m9.figshare.7421687.v1
title: Additional file 11: of The evolution of ependymin-related proteins

description: Sequences of all EPDR proteins analysed in this study. Description of Data: Fasta file containing protein sequences of all EPDRs used in this study, including manually curated Amphimedon queenslandica and Branchiostoma belcheri sequences. (FA 94 kb)
DOI: 10.6084/m9.figshare.7421693.v1
title: MOESM4 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 4: Table S4. Significantly enriched gene ontology (GO) terms in the set of genes containing synonymous variants.
DOI: 10.6084/m9.figshare.7421678
title: Additional file 10: of The evolution of ependymin-related proteins

description: Sources of sequence data used in this study. Description of Data: Excel file providing details of data sources, including web link and references, if applicable. (XLSX 65 kb)
DOI: 10.7284/113130
title: Gyrocompass data collected during research cruise NH1325 using a Sperry MK-37 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421672
title: MOESM2 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 2: Table S2. Genes containing loss-of function (LOF), nonsynonymous (NONSYN), synonymous (SYN), regulatory (UTR), and other variants and the positions of variants.
DOI: 10.6084/m9.figshare.7421675
title: Additional file 4: of miRTrace reveals the organismal origins of microRNA sequencing data

description: Supplementary miRTrace reports. Report S1. miRTrace Trace report of the samples used in Fig. 2. Report S2. miRTrace QC report of the public M. musculus small RNA-Seq datasets used in Fig. 3a. Report S3. miRTrace QC report of the public C. elegans small RNA-Seq datasets used in Fig. 3a. Report S4. miRTrace QC report of the public D. melanogaster small RNA-Seq datasets used in Fig. 3a. Report S5. miRTrace QC report of the mouse samples in silico contaminated with various amounts of human sequences. The same samples as in main Fig. 3f left panel. Report S6. miRTrace QC report of the mouse samples in silico contaminated with various amounts of fruit fly sequences. The same samples as in main Fig. 3f right panel. Report S7–S8. miRTrace QC report of the samples used in Additional file 2: Figure S4. (ZIP 2285 kb)
DOI: 10.6084/m9.figshare.7421678.v1
title: Additional file 10: of The evolution of ependymin-related proteins

description: Sources of sequence data used in this study. Description of Data: Excel file providing details of data sources, including web link and references, if applicable. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.7421681.v1
title: MOESM3 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 3: Table S3. Significantly enriched gene ontology (GO) terms in the set of genes containing nonsynonymous variants.
DOI: 10.6084/m9.figshare.7421675.v1
title: Additional file 4: of miRTrace reveals the organismal origins of microRNA sequencing data

description: Supplementary miRTrace reports. Report S1. miRTrace Trace report of the samples used in Fig. 2. Report S2. miRTrace QC report of the public M. musculus small RNA-Seq datasets used in Fig. 3a. Report S3. miRTrace QC report of the public C. elegans small RNA-Seq datasets used in Fig. 3a. Report S4. miRTrace QC report of the public D. melanogaster small RNA-Seq datasets used in Fig. 3a. Report S5. miRTrace QC report of the mouse samples in silico contaminated with various amounts of human sequences. The same samples as in main Fig. 3f left panel. Report S6. miRTrace QC report of the mouse samples in silico contaminated with various amounts of fruit fly sequences. The same samples as in main Fig. 3f right panel. Report S7–S8. miRTrace QC report of the samples used in Additional file 2: Figure S4. (ZIP 2285 kb)
DOI: 10.7284/113127
title: Meteorological Station data collected during research cruise NH1325 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421666
title: Additional file 3: of miRTrace reveals the organismal origins of microRNA sequencing data

description: Supplementary tables. (XLSX 735 kb)
DOI: 10.6084/m9.figshare.7421660
title: Additional file 1: of Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host

description: Table S1. Soil physico-chemistry of the dune’s bulk sand. All values are given as mean of three replicates ± standard error. Table S2. Measurements of root and rhizosheath diameters (n = 10). Analysis of variance (ANOVA) is reported. For values p
DOI: 10.6084/m9.figshare.7421663
title: MOESM1 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 1: Table S1. Animals used in this study and summary of sequencing.
DOI: 10.6084/m9.figshare.7421666.v1
title: Additional file 3: of miRTrace reveals the organismal origins of microRNA sequencing data

description: Supplementary tables. (XLSX 735 kb)
DOI: 10.6084/m9.figshare.7421672.v1
title: MOESM2 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 2: Table S2. Genes containing loss-of function (LOF), nonsynonymous (NONSYN), synonymous (SYN), regulatory (UTR), and other variants and the positions of variants.
DOI: 10.7284/113134
title: Meteorological Station data collected during research cruise NH1325 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421660.v1
title: Additional file 1: of Rhizosheath microbial community assembly of sympatric desert speargrasses is independent of the plant host

description: Table S1. Soil physico-chemistry of the dune’s bulk sand. All values are given as mean of three replicates ± standard error. Table S2. Measurements of root and rhizosheath diameters (n = 10). Analysis of variance (ANOVA) is reported. For values p
DOI: 10.6084/m9.figshare.7421663.v1
title: MOESM1 of Porcine single nucleotide polymorphisms and their functional effect: an update

description: Additional file 1: Table S1. Animals used in this study and summary of sequencing.
DOI: 10.6084/m9.figshare.7421651
title: Additional file 1: of miRTrace reveals the organismal origins of microRNA sequencing data

description: The catalog of clade-specific families. (TXT 3 kb)
DOI: 10.7284/113128
title: Winch data collected during research cruise NH1325 using a Markey DUSH-5 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421651.v1
title: Additional file 1: of miRTrace reveals the organismal origins of microRNA sequencing data

description: The catalog of clade-specific families. (TXT 3 kb)
DOI: 10.6084/m9.figshare.7421636
title: NGS data of Starter FRT82B and 661T mutant

description: NGS results of whole genome SOLiD sequencing. <i>Drosophila</i> melanogaster R5 genome was used as the reference. Mapped reads of heterozygous 661T/FRT82B or isogenic starter FRT82B. BAM files Include only 3R:16,241,996-17,372,266, where the mutation responsible to 661T phenotype was mapped. <br>
DOI: 10.7284/116273
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1403 using a Furuno GP-150 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421636.v1
title: NGS data of Starter FRT82B and 661T mutant

description: NGS results of whole genome SOLiD sequencing. <i>Drosophila</i> melanogaster R5 genome was used as the reference. Mapped reads of heterozygous 661T/FRT82B or isogenic starter FRT82B. BAM files Include only 3R:16,241,996-17,372,266, where the mutation responsible to 661T phenotype was mapped. <br>
DOI: 10.7284/116275
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1403 using a Garmin GPS-17HVS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421621
title: 180810_mpadf.rda

description: Input data for analyses described in:<br>Stevenson, S. L., Woolley, S. N., Barnett, J., & Dunstan, P. K. (2019). Testing the presence of marine protected areas against their ability to reduce pressures on biodiversity. <i>Conservation Biology</i>. <br>This is an .rda data object that can be loaded into R or R Studio.<br>This is the large dataframe created by integrating human pressure values (Halpern et al. 2015) with marine protected area (MPA) locations (UNEP-WCMC, 2016). The rows are individual MPAs, the columns are mean value of different human pressures in that MPA.<br>It is not a final product but input for the analysis sections of the code published at:<br>https://github.com/Simonestevo/MPA_final<br>Raw pressure data obtained from Halpern et al (2015).<br>Raw MPA data obtained from the July 2016 version of the WDPA (UNEP-WCMC 2016).<br>Halpern BS, et al. 2015. Spatial and temporal changes in cumulative human impacts on the world's ocean. Nature Communications 6:7615-7615. https://knb.ecoinformatics.org/view/doi:10.5063/F1S180FS<br>UNEP-WCMC I. 2016. World Database on Protected Areas. IUCN & UNEP-WCMC, Cambridge, UK. www.protectedplanet.net<br><br>
DOI: 10.7284/116276
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1403 using a Ashtech ADU2 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421621.v2
title: 180810_mpadf.rda

description: Input data for analyses described in:<br>Stevenson, S. L., Woolley, S. N., Barnett, J., & Dunstan, P. K. (2019). Testing the presence of marine protected areas against their ability to reduce pressures on biodiversity. <i>Conservation Biology</i>. <br>This is an .rda data object that can be loaded into R or R Studio.<br>This is the large dataframe created by integrating human pressure values (Halpern et al. 2015) with marine protected area (MPA) locations (UNEP-WCMC, 2016). The rows are individual MPAs, the columns are mean value of different human pressures in that MPA.<br>It is not a final product but input for the analysis sections of the code published at:<br>https://github.com/Simonestevo/MPA_final<br>Raw pressure data obtained from Halpern et al (2015).<br>Raw MPA data obtained from the July 2016 version of the WDPA (UNEP-WCMC 2016).<br>Halpern BS, et al. 2015. Spatial and temporal changes in cumulative human impacts on the world's ocean. Nature Communications 6:7615-7615. https://knb.ecoinformatics.org/view/doi:10.5063/F1S180FS<br>UNEP-WCMC I. 2016. World Database on Protected Areas. IUCN & UNEP-WCMC, Cambridge, UK. www.protectedplanet.net<br><br>
DOI: 10.7284/116277
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1403 using a Furuno GP-90D instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7421621.v1
title: 180810_mpadf.rda

description: Input data for analyses described in:<br>Stevenson, S. L., Woolley, S. N., Barnett, J., & Dunstan, P. K. (2019). Testing the presence of marine protected areas against their ability to reduce pressures on biodiversity. <i>Conservation Biology</i>. <br>This is an .rda data object that can be loaded into R or R Studio.<br>This is the large dataframe created by integrating human pressure values (Halpern et al. 2015) with marine protected area (MPA) locations (UNEP-WCMC, 2016). The rows are individual MPAs, the columns are mean value of different human pressures in that MPA.<br>It is not a final product but input for the analysis sections of the code published at:<br>https://github.com/Simonestevo/MPA_final<br>Raw pressure data obtained from Halpern et al (2015).<br>Raw MPA data obtained from the July 2016 version of the WDPA (UNEP-WCMC 2016).<br>Halpern BS, et al. 2015. Spatial and temporal changes in cumulative human impacts on the world's ocean. Nature Communications 6:7615-7615. https://knb.ecoinformatics.org/view/doi:10.5063/F1S180FS<br>UNEP-WCMC I. 2016. World Database on Protected Areas. IUCN & UNEP-WCMC, Cambridge, UK. www.protectedplanet.net<br><br>
DOI: 10.7284/116274
title: Gyrocompass data collected during research cruise NH1403 using a Sperry MK-37 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116271
title: Meteorological Station data collected during research cruise NH1403 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116278
title: Meteorological Station data collected during research cruise NH1403 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116272
title: Winch data collected during research cruise NH1403 using a Markey DUSH-5 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116279
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise NH1404 using a Hawaii UHDAS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116282
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1404 using a Furuno GP-150 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116284
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1404 using a Garmin GPS-17HVS instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116285
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1404 using a Ashtech ADU2 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116286
title: GNSS (Global Navigation Satellite System) data collected during research cruise NH1404 using a Furuno GP-90D instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116283
title: Gyrocompass data collected during research cruise NH1404 using a Sperry MK-37 instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7420997
title: How to improve root canal filling in teeth subjected to radiation therapy for cancer

description: Abstract The aim of this study was to evaluate the influence of radiation therapy on root canal sealer push-out bond strength (BS) to dentin and the sealer/dentin interface after different final irrigation solutions (NaOCl, EDTA, and chitosan). Sixty-four maxillary canines were distributed into two groups (n=30): non-irradiated and irradiated with 60 Gy. Canals were prepared with Reciproc-R50 and subdivided (n=10) for final irrigation (NaOCl, EDTA, chitosan) and filled. Three dentin slices were obtained from each root third. The first slice of each third was selected for BS evaluation, and the failure mode was determined by stereomicroscopy. SEM analysis of the sealer-dentin interface was performed in the remaining slices. Two-way ANOVA and Tukey's tests (α=0.05) were used. Lower BS (P&lt;0.0001) was obtained after irradiation (2.07±0.79 MPa), regardless of the final irrigation solution used. The NaOCl group (P&lt;0.001) had the lowest BS in the irradiated (1.68±0.72) and non-irradiated (2.39±0.89) groups, whereas the EDTA (irradiated: 2.14±0.77 and non-irradiated: 3.92±1.54) and chitosan (irradiated: 2.37±0.73 and non-irradiated: 3.51±1.47) groups demonstrated a higher BS (P&lt;0.05). The highest values were observed in the coronal third (3.17±1.38) when compared to the middle (2.74±1.36) and apical ones (2.09±0.97)(P&lt;0.0001). There were more cohesive failures and more gaps in irradiated specimens, regardless of the final solution. The present study showed that radiation was associated with a decrease in BS, regardless of the final solution used, whereas chitosan increased BS in teeth subjected to radiation therapy.
DOI: 10.6084/m9.figshare.7421000
title: Evaluation of chemokines and receptors in gnotobiotic root canal infection by F. nucleatum and E. faecalis

description: Abstract The present study aims to evaluate the longitudinal effects of induced experimental infections in gnotoxenic animals on the expression of inflammatory chemokines and their receptors in periradicular tissues. The null hypothesis tested was that Enterococcus faecalis and Fusobacterium nucleatum had no effect on CCR5, CCL5, CXCL10, CCL2/MCP-1, CXCR2 and CCR1 expression. Two groups of five animals (n = 5) aged between 8 and 12 weeks were used in this study. The animals were anaesthetized, and coronary access was performed in the first molar on the right and left sides. Microorganisms were inoculated into the left molar, and the right molar was sealed without contamination to function as a control. Animals were sacrificed 7 and 14 days after infection, and periapical tissues were collected. The cytokine mRNA expression levels were assessed using real-time PCR. The chemokine mRNA expression levels demonstrated that the experimental infection was capable of inducing increased chemokine expression on day 7 compared to that on day 14, except for CCR5 and CCL5, which showed no changes. The gnotoxenic animal model proved to be effective and allowed evaluation of the immune response against a known infection. Additionally, this study demonstrates that gene expression of chemokines and their receptors against the experimental infection preferentially prevailed during the initial phase of induction of the periradicular alteration (i.e., on day 7 post-infection).
DOI: 10.7284/116280
title: Meteorological Station data collected during research cruise NH1404 using a SIO MET-System instrument system onboard the platform RV New Horizon

description: Original (unprocessed) data collected during a Field_expedition