cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25195856
title: Supplementary Material for: Increase of Phosphoprotein Expressions in Amotosalen/UVA-Treated Platelet Concentrates

description: <b><i>Background:</i></b> Pathogen inactivation treatment (PIT) has been shown to alter platelet function, phenotype, morphology and to induce a faster aging of platelet concentrates (PCs). Key pieces of information are still missing to understand the impacts of PITs at the cellular level. <b><i>Objectives:</i></b> This study investigated the impact of amotosalen/UVA on PCs, from a post-translational modifications (PTM) point of view. Phosphoproteomic analyses were conducted on resting platelets, right after the amotosalen/UVA treatment and compared with untreated PCs. <b><i>Method:</i></b> A two-arm study setting was carried out to compare PIT (amotosalen/UVA) to untreated PCs, on day 1 post-donation. Based on a pool-and-split approach, 12 PCs were split into two groups (treated and untreated). Quantitative phosphoproteomics was performed using TMT technology to study the changes of phosphoproteins right after the PIT. <b><i>Results:</i></b> A total of 3,906 proteins and 7,334 phosphosites were identified, and 2,473 proteins and 2,214 phosphosites were observed in at least 5 to 6 replicates. Compared to untreated platelets, PIT platelets exhibited an upregulation of the phosphorylation effects, with 109 phosphosites identified with a higher than 2-fold change. Two pathways were clearly identified. The mitogen activated protein kinases (MAPKs) cascade, which triggers the granule secretion and the activation of the pS15 HSPB1. One of the shape change pathways was also observed with the inhibition of the Threonine 18 and Serine 19 phosphorylations on myosin light chain (MLC) protein after the amotosalen/UVA treatment. <b><i>Conclusions:</i></b> This work provides a deep insight into the impact of amotosalen/UVA treatment from a phosphoprotein viewpoint on resting platelets. Clear changes in phosphorylation of proteins belonging to different platelet pathways were quantified. This discovery corroborates previous findings and fills missing parts of the effect of photochemical treatments on platelets.
DOI: 10.6084/m9.figshare.24240120
title: Additional file 1 of Causal effects of gut microbiome on autoimmune liver disease: a two-sample Mendelian randomization study

description: Additional file 1: Supplementary Figure S1-3. Results of sensitivity analyses displayed in scatter plots for AIH (S1), PBC (S2) and PSC (S3). Supplementary Figure S4-6. Results of leave-one-out analyses, evaluating the influence of individual SNPs on the associations for AIH (S4), PBC (S5) and PSC (S6). Supplementary Table S1. Instrumental Variables for each baterial triats. Supplementary Table S2. Positive results of MR analyses. Supplementary Table S3. All MR results for 194 traits. Supplementary Table S4. Results of sensitivity analyses for IVW positive MR analyses. Supplementary Table S5. Results of MR-PRESSO.
DOI: 10.6084/m9.figshare.24240120.v1
title: Additional file 1 of Causal effects of gut microbiome on autoimmune liver disease: a two-sample Mendelian randomization study

description: Additional file 1: Supplementary Figure S1-3. Results of sensitivity analyses displayed in scatter plots for AIH (S1), PBC (S2) and PSC (S3). Supplementary Figure S4-6. Results of leave-one-out analyses, evaluating the influence of individual SNPs on the associations for AIH (S4), PBC (S5) and PSC (S6). Supplementary Table S1. Instrumental Variables for each baterial triats. Supplementary Table S2. Positive results of MR analyses. Supplementary Table S3. All MR results for 194 traits. Supplementary Table S4. Results of sensitivity analyses for IVW positive MR analyses. Supplementary Table S5. Results of MR-PRESSO.
DOI: 10.24403/jp.1336359
title: Komárek, J. & Anagnostidis, K.: Cyanoprokaryota 1. Teil: Chroococcales. In: Ettl, H., Gärtner, G., Heynig, H. & Mollenhauer, D. (Hrsg.), Süßwasserflora von Mitteleuropa, Band 19/1. - Jena ; Stuttgart ; Lübeck ; Ulm : Gustav Fischer Verlag, 1999 / [rezensiert von] S. J. Casper
DOI: 10.6084/m9.figshare.21087285
title: Additional file 9 of Overexpression of cotton GhNAC072 gene enhances drought and salt stress tolerance in transgenic Arabidopsis

description: Additional file 9: Supplementary Table S5. Biochemical parameters (SOD, CAT, MDA and H2O2) of transgenic and wildtype during drought and salt stress treatment.
DOI: 10.6084/m9.figshare.21087276.v1
title: Additional file 6 of Overexpression of cotton GhNAC072 gene enhances drought and salt stress tolerance in transgenic Arabidopsis

description: Additional file 6: Supplementary Table S2. List of primers for cloning, stress responsive genes and RT-qPCR analysis.
DOI: 10.6084/m9.figshare.23715889
title: Origin of the Songpan-Garze terrane, Tibetan Plateau: A perspective from the tectonic evolution of the Palaeo-Tethys Ocean

description: Compiled detrital zircon ages in the Songpan-Garze terrane and its surroundings
DOI: 10.6084/m9.figshare.23715889.v1
title: Origin of the Songpan-Garze terrane, Tibetan Plateau: A perspective from the tectonic evolution of the Palaeo-Tethys Ocean

description: Compiled detrital zircon ages in the Songpan-Garze terrane and its surroundings
DOI: 10.6084/m9.figshare.21087276
title: Additional file 6 of Overexpression of cotton GhNAC072 gene enhances drought and salt stress tolerance in transgenic Arabidopsis

description: Additional file 6: Supplementary Table S2. List of primers for cloning, stress responsive genes and RT-qPCR analysis.
DOI: 10.6084/m9.figshare.21087282.v1
title: Additional file 8 of Overexpression of cotton GhNAC072 gene enhances drought and salt stress tolerance in transgenic Arabidopsis

description: Additional file 8: Supplementary Table S4. Physiological traits (ELWL, RLWC, CMS and Chlorophyll content) of transgenic and wildtype during drought and salt stress treatment.
DOI: 10.6084/m9.figshare.21087285.v1
title: Additional file 9 of Overexpression of cotton GhNAC072 gene enhances drought and salt stress tolerance in transgenic Arabidopsis

description: Additional file 9: Supplementary Table S5. Biochemical parameters (SOD, CAT, MDA and H2O2) of transgenic and wildtype during drought and salt stress treatment.
DOI: 10.6084/m9.figshare.7987304
title: Petrography and geochemistry of tourmaline breccia in the Longtoushan Au deposit, South China: genesis and its exploration significance

description: Supplementary material B.
DOI: 10.6084/m9.figshare.7987304.v1
title: Petrography and geochemistry of tourmaline breccia in the Longtoushan Au deposit, South China: genesis and its exploration significance

description: Supplementary material B.
DOI: 10.6084/m9.figshare.7987307
title: Petrography and geochemistry of tourmaline breccia in the Longtoushan Au deposit, South China: genesis and its exploration significance

description: Supplementary material A.
DOI: 10.6084/m9.figshare.7987307.v1
title: Petrography and geochemistry of tourmaline breccia in the Longtoushan Au deposit, South China: genesis and its exploration significance

description: Supplementary material A.
DOI: 10.6084/m9.figshare.14266959.v1
title: Additional file 3 of Prevention of acquired sensorineural hearing loss in mice by in vivo Htra2 gene editing

description: Additional file 3. The indel profiles from the three sgRNAs of SpCas9 system in HEI-OC1 cells.
DOI: 10.6084/m9.figshare.20038839
title: Tetramethylpyrazine protects Schwann cells from ischemia-like injury and increases cell survival in cold ischemic rat nerves

description: Tetramethylpyrazine (TMP), a major active ingredient of Ligusticum wallichi Franchat extract (a Chinese herb), exhibits neuroprotective properties in ischemia. In this study, we assessed its protective effects on Schwann cells (SCs) by culturing them in the presence of oxygen glucose deprivation (OGD) conditions and measuring cell survival in cold ischemic rat nerves. In the OGD-induced ischemic injury model of SCs, we demonstrated that TMP treatment not only reduced OGD-induced cell viability losses, cell death, and apoptosis of SCs in a dose-dependent manner, and inhibited LDH release, but also suppressed OGD-induced downregulation of Bcl-2 and upregulation of Bax and caspase-3, as well as inhibited the consequent activation of caspase-3. In the cold ischemic nerve model, we found that prolonged cold ischemic exposure for four weeks was markedly associated with the absence of SCs, a decrease in cell viability, and apoptosis in preserved nerve segments incubated in University of Wisconsin solution (UWS) alone. However, TMP attenuated nerve segment damage by preserving SCs and antagonizing the decrease in nerve fiber viability and increase in TUNEL-positive cells in a dose-dependent manner. Collectively, our results indicate that TMP not only provides protective effects in an ischemia-like injury model of cultured rat SCs by regulating Bcl-2, Bax, and caspase-3, but also increases cell survival and suppresses apoptosis in the cold ischemic nerve model after prolonged ischemic exposure for four weeks. Therefore, TMP may be a novel and effective therapeutic strategy for preventing peripheral nervous system ischemic diseases and improving peripheral nerve storage.
DOI: 10.6084/m9.figshare.14266771
title: Additional file 5 of Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics

description: Additional file 4: Supplementary dataset. The core functioning microbes and their relationships with differentially expressed functions (protein ontologies).
DOI: 10.6084/m9.figshare.6939302
title: Additional file 21: of Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave

description: Agave americana transcript sequences of less than 200Â bp. (FASTA 5010 kb)
DOI: 10.6084/m9.figshare.16893031.v1
title: Additional file 18 of A genome variation map provides insights into the genetics of walnut adaptation and agronomic traits

description: Additional file 18: Table S16. Designed primers for validation of called SNP genotypes.
DOI: 10.15468/dl.gcpyeg
title: Occurrence Download

description: A dataset containing 1141 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythronium mesochoreum Knerr"
 ]
}

 The dataset includes 1141 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021522-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.6653542
title: MAVEN 40k dependency data

description: This is the dependency data used in the "Analyzing the Criticality of Apache Maven Packages Through a Temporal<br> Dependency Graph" paper, with the following structure: <pre><code>{"pkgs":[{ "name": "react", "versions": { "1.00": { "timestamp": "06-05-2022T10:00:01", "dependencies": { "name": "^1.0.2" } } } }, ... ]}</code></pre>
DOI: 10.5281/zenodo.6646901
title: MAVEN 40k dependency data

description: This is the dependency data used in the "Analyzing the Criticality of Apache Maven Packages Through a Temporal<br> Dependency Graph" paper, with the following structure: <pre><code>{"pkgs":[{ "name": "react", "versions": { "1.00": { "timestamp": "06-05-2022T10:00:01", "dependencies": { "name": "^1.0.2" } } } }, ... ]}</code></pre>
DOI: 10.17632/pdcrf3v567.1
title: TDR SSC

description: TDR SSC Experiment Data
DOI: 10.17632/hhrnpr5hxf.3
title: Study on the relationship between restoration benefit and visual satisfaction of LONG-PLAN’s indoor vertical greenery

description: This data is the questionnaire result of the study.
DOI: 10.17632/r5twp9ftyy.2
title: stibnite

description: This data set includes chemistry, S and Pb isotopes of the hydrothermal deposits and fluids of the Daiyon-Yonaguni Knoll hydrothermal field. Data collection and interpretation are described in the paper.
DOI: 10.6084/m9.figshare.20043665.v2
title: AQME paper examples

description: This dataset contains example for our newly developed program AQME : Automated Quantum Mechnical Envirnments for chemical analysis. We show the utility of independent modules in multiple end-to-end examples covering both jupyter notebook and HPC computing.
DOI: 10.5281/zenodo.6653941
title: Data from the parametric analysis of masonry buttressed arches with limit analysis subjected to vertical self-weight plus a proportional concentrated vertical live load applied at quarter-span

description: For each one of the simulations performed from the parametric analysis of masonry buttressed arches with limit analysis subjected to vertical self-weight plus a proportional concentrated vertical live load applied at quarter-span, this database contains a .txt, a .vtk and a .png file. In the .txt file the elapsed time and the collapse multiplier of each simulation can be found. The .vtk file contains all the geometry and displacement values of every masonry buttressed arch. Finally, the .png file presents the collapse mechanism obtained.
DOI: 10.17632/2zhgchsy94.1
title: Green electricity_INA

description: This dataset contains data on variables related to the willingness to pay for greener electricity among Indonesia's residential consumers in urban areas of Java, Indonesia
DOI: 10.17632/mbv3bx847g.2
title: Dataset on broadband Electrochemical Impedance Spectroscopy of Lithium-Ion Batteries for Different Values of the State of Charge

description: The Electrochemical impedance spectroscopy (EIS) were measured on four brand new Samsung cylindrical  ICR18650-26J rechargeable  lithium-Ion batteries at SoC 100%, 90%, 80%, 70%, 60%, 50%, 40%, 30%, 20%, and 10%.  The measurements were repeated six times for each battery. Measurements on other batteries will be added to the dataset when available.
Please note that the measurements in the present dataset are NOT included in the previous (linked) dataset from the same authors

All EIS spectrum was computed measuring impedance at frequencies  [ 0.05, 0.1, 0.2, 0.4, 1, 2, 4, 10, 20, 40, 100, 200, 400, 1000] Hz.  
Impedance values are in the format:  Re{Z}+Im{Z}j

IMPEDANCE.CSV FILE
------------------------

MEASURE_ID: the unique identification code of each EIS measurement 
SOC: state of charge of the battery
BATTERY_ID: the unique identification code of the battery 
FREQUENCY_ID: frequency id. Lookup into the frequencies.csv file to get the value in Hertz
IMPEDANCE_VALUE: measured complex impedance value in Ohm in the format:  (Re{Z}+Im{Z}j)

FREQUENCIES.CSV FILE
---------------------------

FREQUENCY_ID: frequency identification code
FREQUENCY_VALUE: frequency value in Hertz
DOI: 10.17632/c86fsh79m9.3
title: On the explicit formulation of reliability assessment of distribution systems with unknown network topology: Incorporation of DG, switching interruptions, and customer-interruption quantification – Data and results for the case studies

description: A dataset of three test distribution systems, namely 24-, 54-, and 118-node networks.
For each network, average annual nodal demand, number of customers at each node, length, failure rate, switching time, and  repair times for branches, as well as the capacity of the DG units connected to different nodes are provided.
DOI: 10.17632/ckw7gzrvx6.1
title: Immunolipidomics reveals a globoside network during the resolution of pro-inflammatory response in human macrophages

description: Toll-like receptor 4 (TLR4)-mediated changes in macrophages reshape intracellular lipid pools to coordinate an effective innate immune response. Although this has been previously well-studied in different model systems, it remains incompletely understood in primary human macrophages. Here we report time-dependent lipidomic and transcriptomic responses to lipopolysaccharide (LPS) in primary human macrophages from healthy donors. We grouped the variation of ~200 individual lipid species measured by LC-MS/MS into eight temporal clusters. Among all other lipids, glycosphingolipids (glycoSP) and cholesteryl esters (CE) showed a sharp increase during the resolution phase (between 8h or 16h post LPS). GlycoSP, belonging to the globoside family (Gb3 and Gb4), showed the greatest inter-individual variability among all lipids quantified. Integrative network analysis between GlycoSP/CE levels and genome-wide transcripts, identified Gb4 d18:1/16:0 and CE 20:4 association with subnetworks enriched for T cell receptor signaling (PDCD1, CD86, PTPRC, CD247, IFNG) and DC-SIGN signaling (RAF1, CD209), respectively. Our findings reveal Gb3 and Gb4 globosides as sphingolipids associated with the resolution phase of inflammatory response in human macrophages.
DOI: 10.17632/shm68b8x6t.1
title: Supplementary files for "The virtualome: a computational framework to evaluate microbiome analyses"

description: Supplementary files for "The virtualome: a computational framework to evaluate microbiome analyses"
DOI: 10.17632/nt69twh8tn.1
title: Birth and Death in Terminal Complement Pathway

description: Emergence of C6 in vertebrates and loss of C9 in Galliformes.
DOI: 10.17632/dy9xrw4w2n.1
title: The effect of eccentricity of different shape wellbores on the flushing efficiency of drilling fluid filter cake

description: The effect of eccentricity of different shape wellbores on the flushing efficiency of drilling fluid filter cake-dataset
DOI: 10.17632/6284bv2g3j.1
title: Real-time, In Vivo Skin Cancer Triage by Laser-Induced Plasma Spectroscopy Combined with Deep Learning-based Diagnostic Algorithm, Pyun et al.

description: Mendeley Supplemental Table 1. Inclusion and exclusion criteria of patients for the study
Mendeley Supplemental Table 2. The spectral differences for ions highlighted at major wavelengths
Mendeley Supplemental Figure 1. H&E stained slide images of melanoma cases applied with laser irradiation for LIPS measurements
DOI: 10.17632/ktmb6w7yb8.1
title: Immune cells in ocular allergy

description: The datasheet, contains dendritic cell density at 5 locations of the eye, corneal centre, inferior whorl, corneal periphery, corneal limbus, and bulbar conjunctiva. dendritic cell morphology also at the mentioned locations assessed for the cell body size, presence of dendrites, presence of long dendrites, and presence of thick dendrites. All measurements were undertaken using in vivo confocal microscopy. Data are for two groups, allergy, and control group and the ocular allergy signs and symptoms were also measured by the Aston University Allergy Questionnaire and signs assessed by the slit lamp. Differences between allergy and control groups were assessed for the measured variables.
DOI: 10.17632/bzc92ckc8w.1
title: Lipidomic analysis of digestive gland in noble scallop Chlamys nobilis under extremely low temperature stress

description: Extremely low temperature often leads to massive mortalities of marine bivalves, and lipid changes are particularly important. We obtained the lipid of the marine bivalves by liquid chromatograph mass spectrometer (LC-MS) . Then, lipids were identified and quantified using Lipidsearch softwave version 4.1.16  according to mass to charge ratio, retention time and intensity. Meanwhile, we analyzed differentially expressed lipids (DEL) in digestive gland of marine bivalves under extremely low temperature stress.The lipidomic analysis in digestive gland of marine bivalves under extremely low temperature stress revealed that several important DEL and KEGG pathway were identified to  be potentially involved in resisting extremely low temperature of marine bivalves. 
File DEL: DEL in digestive gland of marine bivalves between 27 °C and 9 °C.
DOI: 10.17632/h6d7pnzj73.1
title: Data for: Financial Inclusion in Turkey: Unpacking the Provincial Inequality and its Determinants

description: This document includes the dataset and codes used in the paper "Financial Inclusion in Turkey: Unpacking the Provincial Inequality and its Determinants".
DOI: 10.17632/mhnvhcwp8h.1
title: The long non-coding RNA mimi scaffolds neuronal granules to maintain nervous system maturity. Grzejda et al.

description: The long non-coding RNA mimi scaffolds neuronal granules to maintain nervous system maturity. Grzejda et al.
DOI: 10.17632/964bjjwx59.3
title: Data Used to Fitting P-wave Magnitude Formula in Yunnan

description: This dataset and the programs are used for the paper '"A Magnitude Estimation Approach and Application to the Yunnan Earthquake Early Warning Network".
DOI: 10.17632/443sdzt6dx.1
title: Role of the alloy grain boundaries in the high temperature oxidation and Cr volatilization of 22 wt.% Cr ferritic stainless steel for SOFC applications

description: Fig. 2: The processed data obtained from the weight gain test of two different samples is given. Discontinuous weight gain test was conducted. For each measurement, we measured a weight increase at least five times to get a reliable average value. The data provided here are the average values.
Fig.3: The processed data from the Cr evaporation rate test. Accumulative Cr release for 700 h and the change of Cr release rate were included.
Fig.10:  The raw data results from XRD analysis of oxidized specimens.  
Fig.11: The processed data from SIMS Depth profile results. 
Fig.12: The corrected weight gain results considering the effect of Cr evaporation
Fig.13: The oxide thickness results from BSE images. Each column represent a single BSE image. 
Fig.14: The process data from TEM-EELS results
DOI: 10.17632/6jznbnw3xt.1
title: SCO2_heat_transfer_upwards_NPIC

description:  The data is uploaded to study heat transfer characteristics of SCO2 vertically flowing in a tube. The experimeants were conducted by CNNC Key Laboratory Nuclear Reactor Thermal Hydraulics Technology, Nuclear Power Institute of China. More information can be found in the uploaded file.
DOI: 10.17632/jtrbwtk442.1
title: Suplementary material - article "INFLUENCE OF ALGAE-β-GLUCANS SUPPLEMENTATION ON THE PERFORMANCE, HEALTH AND BLOOD METABOLITES OF HOLSTEIN DAIRY CALVES"

description: Figure S1. Effect of β-glucans supplementation at a rate of 2 g/d in the milk replacer on performance and body measurements (LSM ± SEM) of preweaned calves compared to a negative control (16 per treatment). a) Total DMI, b) Starter DMI, c) ADG, d) Heart girth, e) Withers height, and f) Hip width.
Figure S2. Effect of β-glucans supplementation at a rate of 2 g/d in the milk replacer on blood parameters (LSM ± SEM) of preweaned calves compared to a negative control (16 per treatment). a) Glucose, b) Total serum protein, c) Albumin, and d) Creatinine.
Figure S3. Effect of β-glucans supplementation at a rate of 2 g/d in the milk replacer on blood cell count (LSM ± SEM) of preweaned calves compared to a negative control (16 per treatment). a) Leukocytes, b)Neutrophils, c) Lymphocytes, and d) Monocytes