cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.h4ch9g
title: Occurrence Download

description: A dataset containing 7144722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer rubrum, Acer rufinerve, Acorus gramineus, Adonis vernalis, Alnus spaethii, Amelanchier arborea, Andromeda polifolia, Anemone ranunculoides, Araucaria araucana, Artemisia ludoviciana, Aster tongolensis, Aubrieta gracilis, Baptisia australis, Berberis frikartii, Bergenia crassifolia, Betula nigra, Buxus microphylla, Calluna vulgaris, Caltha palustris, Camassia quamash, Camellia japonica, Camellia sasanqua, Carlina acaulis, Carlina vulgaris, Ceanothus pallidus, Chamaerops humilis, Chrysanthemum indicum, Clematis durandii, Clematis viticella, Cordyline australis, Cornus nuttallii, Corydalis flexuosa, Daphne burkwoodii, Delosperma brunnthaleri, Delosperma congestum, Deutzia hybrida, Diervilla splendens, Dodecatheon meadia, Echinops banaticus, Enkianthus perulatus, Epimedium pubigerum, Epimedium youngianum, Eremurus robustus, Eremurus stenophyllus, Erodium variabile, Fargesia rufa, Fargesia scabrida, Festuca amethystina, Fraxinus angustifolia, Fuchsia hybrida, Gaillardia aristata, Gaillardia grandiflora, Gaultheria procumbens, Gentiana sino-ornata, Geranium clarkei, Geranium johnsonii, Gunnera manicata, Helenium autumnale, Hibiscus moscheutos, Iris ensata, Iris pseudacorus, Laurus nobilis, Leucothoe axillaris, Leucothoe fontanesiana, Linum flavum, Lolium mairei, Lonicera caerulea, Lysimachia ciliata, Magnolia brooklynensis, Melica transsilvanica, Nerium oleander, Olea europaea, Origanum laevigatum, Penstemon digitalis, Petrosedum amplexicaule, Phedimus stolonifer, Phoenix canariensis, Phormium tenax, Phyllosasa tranquillans, Picea engelmannii, Pinus monophylla, Pinus pinea, Pleioblastus argenteostriatus, Pleioblastus variegatus, Pleioblastus viridistriatus, Primula rosea, Prunus glandulifolia, Prunus sargentii, Prunus serrula, Prunus subhirtella, Pseudofumaria lutea, Pulmonaria officinalis, Pyrus calleryana, Pyrus communis, Quercus conferta, Quercus petraea, Rheum palmatum, Rhododendron praecox, Robinia margaretta, Rosa canina, Rosa foetida, Rosa gallica, Rosa hugonis, Rosa majalis, Rosa multiflora, Rosa nitida, Rosa pendulina, Rudbeckia nitida, Salix aurita, Salix babylonica, Salix myrsinifolia, Salix pendulina, Salix triandra, Sasa palmata, Saxifraga urbium, Shibataea kumasasa, Sisyrinchium bermudiana, Spiraea trilobata, Stewartia rostrata, Syringa prestoniae, Syringa swegiflexa, Teucrium lucidrys, Tilia europaea, Trachycarpus fortunei, Tricyrtis hirta, Vaccinium macrocarpon, Vaccinium myrtillus, Veronica ochracea, Veronica odora, Yucca gloriosa, Ceanothus delileanus, Elaeagnus ebbingei, Erica darleyensis, Lonicera tellmanniana)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7144722 records from 5889 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033311-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3jkb4c
title: Occurrence Download

description: A dataset listing the 5143927 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 5143927 records were derived from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001591-250424135625364/datasets/export for details.
DOI: 10.15468/dl.5xtpyc
title: Occurrence Download

description: A dataset containing 68935838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 68935838 records from 1906 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013822-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25326/p9w5-7a68
title: methoxybenzene + OH - Gas-phase oxidation - kinetic study - 2017-01-01

description: Publication of the dataset
DOI: 10.25326/cpj2-9x53
title: Tetramethylethylene + O3 - Gas-phase oxidation - product study

description: Publication of the dataset
DOI: 10.25326/ec1d-wk19
title: NO2 + None - Other - 2018-10-29

description: Publication of the dataset
DOI: 10.25326/25wm-c244
title: + None - Other - 2019-03-04

description: Publication of the dataset
DOI: 10.25326/vs30-tq26
title: + None - Other - 2019-03-14

description: Publication of the dataset
DOI: 10.25326/gpbc-2972
title: + None - Other - 2019-03-04

description: Publication of the dataset
DOI: 10.25326/685d-3a67
title: + None - Other - 2019-03-14

description: Publication of the dataset
DOI: 10.25326/6d0a-ea10
title: + None - Other - 2019-07-09

description: Publication of the dataset
DOI: 10.25326/fgnv-b357
title: + None - Other - 2019-07-09

description: Publication of the dataset
DOI: 10.25326/6gtk-xz48
title: + None - Other - 2019-07-15

description: Publication of the dataset
DOI: 10.13133/uniroma1/glmbvk/qpege7
title: al-Fajr_1-18_1990_TheAllegedCupsCaseTheRulingConvictingTheEnemiesOfDemocracy_OCR.pdf

description: :unav
DOI: 10.25326/t0nk-tg34
title: + None - Other - 2019-07-15

description: Publication of the dataset
DOI: 10.25326/v4nd-w602
title: ammonium sulphate + None - Reference experiment - 2019-02-06

description: Publication of the dataset
DOI: 10.25326/71dr-ey61
title: escherichia coli + None - Other - 2019-05-06

description: Publication of the dataset
DOI: 10.25326/sxbf-bp66
title: escherichia coli + None - Other - 2019-06-11

description: Publication of the dataset
DOI: 10.5061/dryad.tmpg4f4wj
title: Self-compatible blueberry cultivars require fewer floral visits to maximise fruit production than a partially self-incompatible cultivar

description: Effective pollination is a complex phenomenon determined by the outcome of
 the interaction between pollen transfer and a plants’ pollinator
 dependency, yet most studies investigate pollinator effectiveness without
 consideration of plant mating system differences. We investigated
 pollinator effectiveness in three types of blueberry that differed in
 their degree of pollinator dependency as measured by plant mating system:
 two self-compatible highbush cultivars and one partially self-incompatible
 rabbiteye cultivar. We quantified pollinator effectiveness as a function
 of the fruit set and fruit weight resulting from single and multiple
 floral visits (2 – 15 visits), in comparison with estimates of fruit set
 and fruit weight resulting from experimental pollination treatments
 (open-pollination, cross-pollination and self-pollination). Single-visit
 effectiveness of fruit set was similar across pollinator taxa but
 considerably higher in both self-compatible cultivars. The probability of
 fruit set in all three blueberry types improved in response to an
 increasing number of visits, but this relationship was steeper in
 self-compatible cultivars: &gt;90% probability of fruit set was
 achieved in three to five visits. In the self-incompatible rabbiteye
 cultivar, 58% fruit set was achieved with 15 visits. Multiple visits
 improved fruit weight by 27% – 48% in self-compatible cultivars, but not
 there was no relationship in rabbiteye. Pollination deficits in fruit set
 and fruit weight due to self-pollination were most pronounced in
 rabbiteye. Synthesis and applications: Improved understanding of
 cultivar-level mating system differences in plants will inform pollination
 planning and management in agroecosystems. Self-compatible (highbush)
 cultivars require less floral visitation to maximise fruit production.
 Therefore, these cultivars may be best suited to landscapes in which
 pollinator abundance is low, such as intensive and/or simple landscapes.
 In contrast, self-incompatible (rabbiteye) cultivars may benefit from the
 implementation of mixed-cultivar crop row plantings to facilitate
 cross-pollination through the movement by bees between cultivars.
description: R script and datasets used
 to estimate floral visitor abundance, single and multiple visit pollinator
 effectiveness and pollination dependence in three types of blueberry:
 northern highbush (<i>Vaccinium corymbosum</i>), rabbiteye
 (<i>V. virgatum</i>), and southern highbush (<i>V.
 corymbosum </i>hybrid).
DOI: 10.5061/dryad.cjsxksn41
title: Soil properties and N-cycling community data for 324 samples

description: Soil microbial communities, key players of many crucial ecosystem
 functions, are prone to degradation due to intensified environmental
 perturbations. However, few ecological concepts and practices have been
 developed for rescuing these degraded microbial communities. Here, we
 carried out a pot experiment (totally 324 pots) with or without arbuscular
 mycorrhizal fungi (AMF) inoculation and at three levels (one, three and
 six species) of plant diversity to disentangle how the AMF and vegetation
 rescue the soil nitrogen (N) -cycling microbial loop. Our results provide
 strong evidence that AMF inoculation improved the restoration of soil
 N-cycling microbial communities. This improved restoration is related to
 the role of AMF in enhancing interactions within the N-cycling microbial
 loop. Furthermore, increased plant diversity strengthened the role of AMF
 in rescuing degraded N-cycling microbial communities. Our findings provide
 novel insights into the roles of AMF and plant diversity in facilitating
 the rescue of microbial communities in degraded terrestrial ecosystems.
DOI: 10.5061/dryad.dfn2z34zh
title: The structural basis of PTEN regulation by multi-site phosphorylation

description: PTEN is a phosphatidylinositol-3,4,5-triphosphate (PIP3) phospholipid
 phosphatase that is commonly mutated or silenced in cancer. PTEN's
 catalytic activity, cellular membrane localization, and stability are
 orchestrated by a cluster of C-terminal phosphorylation events on Ser380,
 Thr382, Thr383, and Ser385, but the molecular details of this multifaceted
 regulation have remained uncertain. Here we use a combination of protein
 semisynthesis, biochemical analysis, NMR, X-ray crystallography, and
 computational simulations on human PTEN and its sea squirt homolog VSP to
 obtain a detailed picture of how the phospho-C-tail belts around
 PTEN's C2 and phosphatase domains. We also visualize a previously
 proposed dynamic N-terminal alpha-helix and show it is key for PTEN
 catalysis but disordered upon phospho-C-tail interaction. This structural
 model provides a comprehensive framework for how C-tail phosphorylation
 can impact PTEN's cellular functions.
DOI: 10.5061/dryad.gb5mkkwn4
title: Didimosphenia geminata: sequences and morphology data set

description: Microalgae and their invasiveness are recurrent themes in aquatic
 environments and many invasions by microalgae are linked to
 eutrophication. However the diatom Didymosphenia geminata has gained
 notoriety in forming thick mucilaginous mats in pristine, rocky-bottomed
 rivers with no obvious connection to elevated levels of nutrients. This
 species is native to freshwaters of the circumboreal region of the
 Northern Hemisphere and blooms in the Southern Hemisphere have been
 attributed to recent introductions of the species to these regions.
 Although regional population genetic analyses have suggested multiple
 recent introduction of this species, the gene flow and the spatial genetic
 diversity distribution on a global scale remains unknown. We develop a
 phylogeographic analysis to investigate the genetic diversity of D.
 geminata populations around the globe. Our results indicate two distinct
 genetic lineages geographically distributed that remain spatially
 isolated. One lineage is exclusively found in Europe, the other is
 distributed in North America, New Zealand and South America. Since blooms
 of D. geminata commenced in North America and in Europe simultaneously,
 these data support the idea that factors associated with global
 environmental change and possibly the associated biome are the cause of
 blooms globally. We further discuss the role of human mediated-dispersal.
description: <b>Sampling collection</b>.<br> A total of 55
 samples of didymo were collected in Spain, Italy, Polonia, Russia, Canada,
 Chile, Argentina and New Zealand. Samples were stored in 90% ethanol or in
 RNA-later solution for posterior analyses. Didymo cells were measured
 using a light microscopy (LM) and a scanning electron microscope (SEM). LM
 observations were performed using an inverted Leitz Fluovert microscope.
 SEM observations were performed in the UMI core facility (http://microscopiaelectronica.uach.cl). Morphometric analysis of didymo samples from Argentina (n=2), Chile (n= 6), Canada (n=6), Spain (3) and Italy (n=2) was run considering maximum length, maximum width, head pole width and foot pole width of cells. Morphometric variability of cells among samples were tested using one way-ANOVA.  Total DNA was extracted using the CTAB plus Proteinase K protocol. Target genes were two nuclear genes, the large (LSU) and the small (SSU) ribosomal subunits rDNA and two mitochondrial markers, the cytochrome oxidase B (COB) and the NADH dehydrogenase subunit 6 (NAD-6). All PCRs were performed in a final volume of 12.5 mL containing 2.5 ml of buffer 5X, 1.5 ml of MgCL<sub>2</sub> (5mM), 0.25 of dNTPs (0.2mM each one), 0.125 ml for each primer (10um), 1 ml of BSA (0.24 mg/ml), 0.0625 ml GoTaq (0.025U), 5.375 ml milli Q water, and 1 ml of total DNA. Amplicons were purified using E.Z.N.A. Cycle Pure Kit (Omega Bio-tek) and sequenced at the core facility Austral-<i>omics</i> (www.australomics.cl) using an ABI-3500 sequencer. Sequences edition and alignments were performed using the bioinformatics software Geneious Pro.
DOI: 10.5061/dryad.12jm63xvs
title: Resuscitative endovascular balloon occlusion of the aorta (REBOA) minimal dataset

description: Introduction Resuscitative endovascular balloon occlusion of the aorta
 (REBOA) may be used in severely injured patients with uncontrollable
 bleeding. However, zone dependent effects of REBOA are rarely described.
 We compared the short-term zone- and organ-specific microcirculatory
 changes in abdominal organs and the extremity during occlusion of the
 aorta in a standardized porcine model. Methods Male pigs were placed under
 general anesthesia, for median laparotomy to expose intra-abdominal
 organs. REBOA placement occurred in Zone 1 (from origin left subclavian
 artery to celiac trunk), Zone 2 (between the coeliac trunk and most caudal
 renal artery) and Zone 3 (distal most caudal renal artery to aortic
 bifurcation). Local microcirculation of the intra-abdominal organs were
 measured at the stomach, colon, small intestine, liver, and kidneys.
 Further, the right medial vastus muscle was included for assessment.
 Microcirculation was measured using oxygen-to-see device (arbitrary units,
 A.U). Invasive blood pressure measurements were recorded in the carotid
 and femoral artery (ipsilateral). Ischemia/Reperfusion (I/R)-time was 10
 min with complete occlusion. Results At baseline, microcirculation of
 intra-abdominal organs differed significantly (p &lt; 0.001), the
 highest flow was in the kidneys (208.3 ± 32.9 A.U), followed by the colon
 (205.7 ± 36.2 A.U.). At occlusion in Zone 1, all truncal organs showed
 significant decreases (p &lt; 0.001) in microcirculation, by 75% at
 the colon, and 44% at the stomach. Flow-rate changes at the extremities
 were non-significant (n.s). During occlusion in Zone 2, a significant
 decrease (p &lt; 0.001) in microcirculation was observed at the colon
 (-78%), small intestine (-53%) and kidney (-65%). The microcirculatory
 changes at the extremity were n.s. During occlusion in Zone 3, truncal and
 extremity microcirculatory changes were n.s. Conclusion All abdominal
 organs showed significant changes in microcirculation during REBOA. The
 intra-abdominal organs react differently to the same occlusion, whereas
 local microcirculation in extremities appeared to be unaffected by
 short-time REBOA, regardless of the zone of occlusion.
description: During experiment, prospective observational
DOI: 10.5061/dryad.k0p2ngf65
title: Macroclimate drives growth of hair lichens in boreal forest canopies

description: 1.  Epiphytic lichens are important biodiversity
 components of forest canopies worldwide, significantly contributing to
 ecosystem function. The relative growth rate (RGR), a measure of fitness,
 drives population dynamics and shapes lichens’ large-scale distributions.
 In a climate change scenario, we need to know how external (macro- and
 microclimate, and nitrogen deposition), and internal factors (cortical
 pigments, chlorophyll and specimen size) affect RGR in these ecologically
 important canopy organisms. 2.  We used dominant
 pendulous (hair) lichens widely distributed across the boreal biome to
 test the hypothesis that precipitation drives RGR of pale (Alectoria
 sarmentosa, Usnea dasopoga) and dark species (Bryoria fuscescens)
 to a different extent across a large-scale gradient from continental to
 oceanic climates (precipitation: 450-2600 mm) in Scandinavia (60-64° N,
 5-19° E). After transplanting lichens to lower branches of Picea
 abies in nine boreal forest sites for one year, we used linear
 mixed effect models to analyze how total precipitation, rainfall, number
 of days with rain, temperature sum, nitrogen deposition, light,
 chlorophyll a (an indicator of photosynthetic capacity),
 and size influenced their RGR. 3.  RGR was highest in
 the pale species (Alectoria and Usnea) and increased
 with amount and frequency of precipitation, with &gt;3 times higher
 RGR in the wettest compared to the driest site. The number of days with
 rain was a better predictor of RGR than total precipitation or rain. By
 contrast, RGR of the dark Bryoria weakly increased with
 precipitation. RGR in all species increased with light and decreased with
 size. Chlorophyll a concentration, boosted by moderate
 nitrogen deposition, increased RGR of all species.
 4.  In conclusion, rainfall likely drives the
 distribution of the pale species due to their higher RGR and abundance in
 wet climates but cannot explain why Bryoria dominate
 drier inland forests. Our results highlight that the functional links
 between rainfall and RGR depends on both color of the lichens (pale versus
 dark pigments) and hydration traits. 5.  Synthesis. Our findings
 may explain the global, regional and local distribution patterns of hair
 lichens and help us to predict how environmental hazards such as climate
 change and forestry influence these important boreal canopy components.
DOI: 10.5061/dryad.r7sqv9s97
title: Phylogeny, phylogeography, and diversification history of Caspian cobra

description: We conducted a comprehensive analysis of the phylogenetic,
 phylogeographic, and demographic relationships of Caspian cobra (Naja
 oxiana; Eichwald, 1831) populations based on a concatenated dataset of two
 mtDNA genes (cyt b and ND4) across the species’ range in Iran,
 Afghanistan, and Turkmenistan, along with other members of Asian cobras
 (i.e. subgenus Naja Laurenti, 1768). Our results provided strong support
 that N. oxiana is monophyletic and its divergence from its sister taxon,
 N. kaouthia, during early Pleistocene. Our results also highlight the
 existence of only one major evolutionary lineage in the Trans-Caspian
 region, suggesting a rapid expansion of the Caspian cobra from eastern to
 western Asia, coupled with a rapid range expansion from east of Iran to
 the northeast. However, the subdivision of eastern and northeastern
 populations in Iran was not supported; hence we propose only one
 evolutionary significant unit across the Iranian range of N. oxiana to be
 considered for conservation efforts.
DOI: 10.5061/dryad.r7sqv9s98
title: Environmental DNA (eDNA) from multiple pathogens is elevated near active Atlantic salmon farms

description: The spread of infection from reservoir host populations is a key mechanism
 for disease emergence and extinction risk and is a management concern for
 salmon aquaculture and fisheries. Using a quantitative environmental DNA
 methodology, we assessed pathogen eDNA in relation to salmon farms in
 coastal British Columbia, Canada, by testing for 39 species of salmon
 pathogens (viral, bacterial, and eukaryotic) in 134 marine environmental
 samples at 58 salmon farm sites (both active and inactive) over three
 years. Environmental DNA from twenty-two pathogen species was detected 496
 times and species varied in their occurrence among years and sites, likely
 reflecting variation in environmental factors, other native host species,
 and strength of association with domesticated Atlantic salmon. Overall, we
 found that the probability of detecting pathogen eDNA was 2.72 (95% CI:
 1.48, 5.02) times higher at active versus inactive salmon farm sites and
 1.76 (95% CI: 1.28, 2.42) times higher per standard deviation increase in
 domesticated Atlantic salmon eDNA concentration at a site. If the
 distribution of pathogen eDNA accurately reflects the distribution of
 viable pathogens, our findings suggest that salmon farms serve as a
 potential reservoir for a number of infectious agents; thereby elevating
 the risk of exposure for wild salmon and other fish species that share the
 marine environment.
description: Methods and results appear in manuscript DOI:
 10.1098/rspb.2020.
description: Columns entitled "Year", "Site", 
 "Active",  "Atl_eDNA_Centered",
 "Microparasite_Spp", and
 "Binary_Microparasite_Detections" contain data that are
 fundamental to the analysis reported in this manuscript. The remaining
 columns in this table contain data that are supplementary to the
 analysis.
DOI: 10.5061/dryad.nk98sf7rf
title: SNP discovery in Cryptomeria japonica var. sinensis using restriction-site associated DNA sequencing (RAD-seq）

description: Our study is the first to explore the genetic composition of ancient
 Cryptomeria trees across distribution range in China. Background and
 Objectives: Cryptomeria japonica var. sinensis is a native forest species
 of China; it is widely planted in the south of the country to create
 forests and for wood production. Unlike Cryptomeria in Japan, genetic
 Chinese Cryptomeria has seldom been studied, although there is ample
 evidence of its great ecological and economic value. Materials and
 Methods: Because of overcutting, natural populations are rare in the wild.
 In this study, we investigated seven ancient tree populations to explore
 the genetic composition of Chinese Cryptomeria through ddRAD-seq
 technology. Results: The results reveal lower genetic variation but higher
 genetic differentiation (Ho=0.143, FST=0.1204) than Japanese Cryptomeria
 (Ho=0.245, FST=0.0455). The 86% within-population variation is based on
 analysis of molecular variance (AMOVA). Significant excess heterozygosity
 was detected in three populations and some outlier loci were found; these
 were considered to be the consequence of selection or chance. STRUCTURE
 analysis and dendrogram construction divided the seven ancient tree
 populations into four groups corresponding to the geographical provinces
 in which the populations are located, but there was no obvious correlation
 between genetic distance and geographic distance. Demographic history
 analysis conducted by a Stairway Plot showed that the effective population
 size of Chinese Cryptomeria had experienced a continuing decline from the
 mid-Pleistocene to the present. Our findings suggest that strong genetic
 drift caused by climate fluctuation and intense anthropogenic disturbance
 together contributed to the current low diversity and structure.
 Considering the species’ unfavorable conservation status, strategies are
 urgently required to preserve the remaining genetic resources.
description: ddRAD library sequenced on Illumina HiSeq X Ten
 platform. SNP calling and filtering on dDocent
 pipeline.