cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11536068
title: Methods for Pescador et al 2020 JVS.R

description: R script to compute the methods and steps followed in the paper "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland" by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero.
DOI: 10.6084/m9.figshare.11536068.v1
title: Methods for Pescador et al 2020 JVS.R

description: R script to compute the methods and steps followed in the paper "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland" by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero.
DOI: 10.6084/m9.figshare.11536062
title: Covariates.RData

description: R list with the covariates used in the models fixed in the paper "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland"<br>by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero,
DOI: 10.6084/m9.figshare.11536065.v1
title: PPP_plants.RData

description: R list with Planar Point Pattern of two species (Linum suffruticosum and Helianthemum hirtum) present in the community sampled in the paper: "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland" by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero.
DOI: 10.6084/m9.figshare.11536062.v2
title: Covariates.RData

description: R list with the covariates used in the models fixed in the paper "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland"<br>by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero,
DOI: 10.6084/m9.figshare.11536047
title: Tecto_Replumaz_Supplementary.pdf

description: Low temperature thermochronology dataset and thermal modeling of samples near Deqing,along the Mekong River, SouthEast Tibet<br>
DOI: 10.6084/m9.figshare.11536047.v1
title: Tecto_Replumaz_Supplementary.pdf

description: Low temperature thermochronology dataset and thermal modeling of samples near Deqing,along the Mekong River, SouthEast Tibet<br>
DOI: 10.6084/m9.figshare.11536062.v1
title: Covariates.RData

description: R list with the covariates used in the models fixed in the manuscript "Tales from the underground: soil heterogeneity and not only aboveground plant interactions explain fine-scale species patterns in a Mediterranean dwarf-shrubland"<br>by David S. Pescador, Marcelino de la Cruz, Julia Chacón, Javier Pavón-García and Adrián Escudero,
DOI: 10.6084/m9.figshare.11536041
title: Gender statistics redux, average 2012-2016 v2

description: Processed version of https://figshare.com/articles/Gender_statistics_from_World_Bank_-_CSV_-_September_2017/9904979<br>This version is a much-reduced and rearranged version. It has been tidied to have one row per country, and has a few variables, mainly relating to expenditure, fertility, mortality. The data are an average of the values from 2012 through 2016.<br>This version stores the population value in millions of people rather than numbers of people.<br><br>See https://github.com/matthew-brett/datasets/tree/90626ae3/gender_stats for source and processing.<br>Please attribute to the World Bank Data Catalogue with the this URL: https://datacatalog.worldbank.org/dataset/gender-statistics.<br>Data dictionary at https://github.com/matthew-brett/datasets/blob/90626ae39f4f6f70bf43ed98c39197e8fe4d768c/gender_stats/processed/gender_stats_data_dict.md<br>
DOI: 10.6084/m9.figshare.11536041.v1
title: Gender statistics redux, average 2012-2016 v2

description: Processed version of https://figshare.com/articles/Gender_statistics_from_World_Bank_-_CSV_-_September_2017/9904979<br>This version is a much-reduced and rearranged version. It has been tidied to have one row per country, and has a few variables, mainly relating to expenditure, fertility, mortality. The data are an average of the values from 2012 through 2016.<br>This version stores the population value in millions of people rather than numbers of people.<br><br>See https://github.com/matthew-brett/datasets/tree/90626ae3/gender_stats for source and processing.<br>Please attribute to the World Bank Data Catalogue with the this URL: https://datacatalog.worldbank.org/dataset/gender-statistics.<br>Data dictionary at https://github.com/matthew-brett/datasets/blob/90626ae39f4f6f70bf43ed98c39197e8fe4d768c/gender_stats/processed/gender_stats_data_dict.md<br>
DOI: 10.6084/m9.figshare.11535804
title: Raw Data for Teaching Institution

description: Raw Data for Teaching Institution, just for test.
DOI: 10.6084/m9.figshare.11535801
title: Position-orientation adaptive smoothing and diffusion weighted imaging

description: MRI Data including one defaced 3D T1 weighted image (XXX-T1_deface.nii.gz) as well as five diffusion weighted image sets (XXX-01.nii.gz … XXX-05-nii.gz) with bvec and bval files for 22 healthy volunteers.<br>
DOI: 10.6084/m9.figshare.11535804.v1
title: Raw Data for Teaching Institution

description: Raw Data for Teaching Institution, just for test.
DOI: 10.6084/m9.figshare.11535804.v2
title: Raw Data for Teaching Institution

description: Raw Data for Teaching Institution, just for test.
DOI: 10.6084/m9.figshare.11535804.v4
title: Raw Data for Teaching Institution

description: Raw Data for Teaching Institution, just for test.
DOI: 10.6084/m9.figshare.11535804.v3
title: Raw Data for Teaching Institution

description: Raw Data for Teaching Institution, just for test.
DOI: 10.6084/m9.figshare.11535534
title: STARE Dataframes for Geospatial Analysis

description: PySTARE is a Python module that exposes the STARE library to Python. STARE dateframes further abstract PySTARE and provide high-level functions for users to explore and interact with STARE.STARE dataframes represent geometries as sets of STAREtriangles or ”trixels” (analogous to GeoPandas geodataframes which represent geometries as WKT.) InSTARE dataframes, points are represented as STARE trixels at the HTM tree’s leaf level. Polygons are represented as sets of STARE trixels that cover the polygon. The trixels are stored as integerized STARE index values.This poster was presented at the Earth Science Information Partners (ESIP) Winter Meeting held in Bethesda, MD in January 2020.
DOI: 10.6084/m9.figshare.11535279
title: Mammal-pathogen species-level associations

description: Data set of interactions between mammals and their pathogens extracted from the Enhanced Infectious Diseases Database (EID2) - https://eid2.liverpool.ac.uk/. For details of these interactions and their sources please refer to EID2.
DOI: 10.6084/m9.figshare.11535534.v1
title: STARE Dataframes for Geospatial Analysis

description: PySTARE is a Python module that exposes the STARE library to Python. STARE dateframes further abstract PySTARE and provide high-level functions for users to explore and interact with STARE.STARE dataframes represent geometries as sets of STAREtriangles or ”trixels” (analogous to GeoPandas geodataframes which represent geometries as WKT.) InSTARE dataframes, points are represented as STARE trixels at the HTM tree’s leaf level. Polygons are represented as sets of STARE trixels that cover the polygon. The trixels are stored as integerized STARE index values.This poster was presented at the Earth Science Information Partners (ESIP) Winter Meeting held in Bethesda, MD in January 2020.
DOI: 10.5522/04/11535009
title: Geomagnetic Storm List for 2012 - 2018

description: <pre>File size: 6 kB</pre><pre>File format: Plain Text</pre><pre>Using observations of the Sym-H index, the dataset provides the date and time for the start of the initial phase, start of the main phase, start of the recovery phase, and the end of the recovery phase for each identified storm. The minimum Sym-H index value during the storm is also provided. </pre><pre>The method used to derive the storm list is detailed in full by Walach & Grocott [2019]. In brief, this method identifies a storm as a period where the Sym-H index passes below a threshold of -80 nT. The end of the recovery phase is marked as the time of the minimum Sym-H value. The start of the main phase and the end of the recovery phase are defined as the times immediately prior and after the minimum in Sym-H index where the Sym-H index reaches a threshold of -15 nT. The start of the main phase is determined by identifying where the Sym-H index value reaches a maximum and marking the time immediately prior when the Sym-H index crosses a threshold of -15 nT.</pre><pre>The Sym-H index is available from http://wdc.kugi.kyoto-u.ac.jp/index.html.</pre><pre>This storm list is used in Sandhu et al. "Challenging the Use of Ring Current Indices During Geomagnetic Storms" (Journal of Geophysical Research: Space Physics, submitted).</pre><pre><br></pre>
DOI: 10.5522/04/11535009.v1
title: Geomagnetic Storm List for 2012 - 2018

description: <pre>File size: 6 kB</pre><pre>File format: Plain Text</pre><pre>Using observations of the Sym-H index, the dataset provides the date and time for the start of the initial phase, start of the main phase, start of the recovery phase, and the end of the recovery phase for each identified storm. The minimum Sym-H index value during the storm is also provided. </pre><pre>The method used to derive the storm list is detailed in full by Walach & Grocott [2019]. In brief, this method identifies a storm as a period where the Sym-H index passes below a threshold of -80 nT. The end of the recovery phase is marked as the time of the minimum Sym-H value. The start of the main phase and the end of the recovery phase are defined as the times immediately prior and after the minimum in Sym-H index where the Sym-H index reaches a threshold of -15 nT. The start of the main phase is determined by identifying where the Sym-H index value reaches a maximum and marking the time immediately prior when the Sym-H index crosses a threshold of -15 nT.</pre><pre>The Sym-H index is available from http://wdc.kugi.kyoto-u.ac.jp/index.html.</pre><pre>This storm list is used in Sandhu et al. "Challenging the Use of Ring Current Indices During Geomagnetic Storms" (Journal of Geophysical Research: Space Physics, submitted).</pre><pre><br></pre>
DOI: 10.6084/m9.figshare.11534862
title: Supplementary Material for: Hidradenitis Suppurativa and Bipolar Disorders: A Population-Based Study

description: <b><i>Background:</i></b> Psychological comorbidities have been reported in patients with hidradenitis suppurativa (HS), yet only a few studies have investigated the possible association between HS and severe psychiatric disorders. The current study aimed to assess the association between HS and bipolar disorder, a major, chronic, psychiatric disease. <b><i>Methods:</i></b> A nationwide, population-based study was performed utilizing data from the Clalit Health Services (CHS) database in Israel. The study included 4,191 HS patients and 20,941 age- and gender-matched controls. A multivariate binary logistic regression, adjusted for demographic and behavioral risk factors, was performed. <b><i>Results:</i></b> A higher proportion of bipolar disorders was found among HS patients compared to controls (0.7 vs. 0.1%, respectively). There was an increased proportion of active smokers among HS patients than among controls (53.4 vs. 13.5%, respectively). In the multivariate analysis, adjusting for age, sex, and smoking, HS was found to be independently and positively associated with bipolar disorders (OR 2.12, 95% CI 1.21–3.27, <i>p</i> &lt; 0.01), yet after controlling for body mass this association became nonsignificant. <b><i>Conclusions:</i></b> Bipolar disorders are associated with HS. Future studies should explore whether cardiometabolic deficiencies might account for this association. Healthcare providers should consider this potential co-occurrence as it may impede patient compliance and require appropriate screening and treatment. Results also stress the need for a multidisciplinary approach to optimize management of the disease and its associated comorbidities.
DOI: 10.6084/m9.figshare.11534547
title: Diet, hypoxia, and exercise

description: Fifteen participants performed two exercise performance test trials following either 4 days of an alkalizing (BASE) or acidizing (ACID) diet in normoxia and after 12 h of normobaric hypoxic exposure.<br>
DOI: 10.6084/m9.figshare.11534166
title: Data On Urban.xlsx

description: Data on urban greenness
DOI: 10.6084/m9.figshare.11534166.v1
title: Data On Urban.xlsx

description: Data on urban greenness
DOI: 10.6084/m9.figshare.11534115
title: Supplementary Material for: Machine Learning in Fetal Cardiology: What to Expect

description: In fetal cardiology, imaging (especially echocardiography) has demonstrated to help in the diagnosis and monitoring of fetuses with a compromised cardiovascular system potentially associated with several fetal conditions. Different ultrasound approaches are currently used to evaluate fetal cardiac structure and function, including conventional 2-D imaging and M-mode and tissue Doppler imaging among others. However, assessment of the fetal heart is still challenging mainly due to involuntary movements of the fetus, the small size of the heart, and the lack of expertise in fetal echocardiography of some sonographers. Therefore, the use of new technologies to improve the primary acquired images, to help extract measurements, or to aid in the diagnosis of cardiac abnormalities is of great importance for optimal assessment of the fetal heart. Machine leaning (ML) is a computer science discipline focused on teaching a computer to perform tasks with specific goals without explicitly programming the rules on how to perform this task. In this review we provide a brief overview on the potential of ML techniques to improve the evaluation of fetal cardiac function by optimizing image acquisition and quantification/segmentation, as well as aid in improving the prenatal diagnoses of fetal cardiac remodeling and abnormalities.
DOI: 10.6084/m9.figshare.11534115.v1
title: Supplementary Material for: Machine Learning in Fetal Cardiology: What to Expect

description: In fetal cardiology, imaging (especially echocardiography) has demonstrated to help in the diagnosis and monitoring of fetuses with a compromised cardiovascular system potentially associated with several fetal conditions. Different ultrasound approaches are currently used to evaluate fetal cardiac structure and function, including conventional 2-D imaging and M-mode and tissue Doppler imaging among others. However, assessment of the fetal heart is still challenging mainly due to involuntary movements of the fetus, the small size of the heart, and the lack of expertise in fetal echocardiography of some sonographers. Therefore, the use of new technologies to improve the primary acquired images, to help extract measurements, or to aid in the diagnosis of cardiac abnormalities is of great importance for optimal assessment of the fetal heart. Machine leaning (ML) is a computer science discipline focused on teaching a computer to perform tasks with specific goals without explicitly programming the rules on how to perform this task. In this review we provide a brief overview on the potential of ML techniques to improve the evaluation of fetal cardiac function by optimizing image acquisition and quantification/segmentation, as well as aid in improving the prenatal diagnoses of fetal cardiac remodeling and abnormalities.
DOI: 10.6084/m9.figshare.11534049
title: Supplementary Material for: How to Intervene in the Caries Process: Early Childhood Caries – A Systematic Review

description: For an Organisation for Caries Research/European Federation of Conservative Dentistry consensus, this systematic review is aimed to assess the question of how to manage the caries process in the case of early childhood caries (ECC). Medline via PubMed was searched systematically regarding management of ECC. First priority was existing systematic reviews or randomized clinical trials otherwise cohort studies dealing with management of ECC, primarily with carious anterior teeth. After data extraction, the potential risk of bias was estimated depending on the study types, and the level of evidence was evaluated. Regarding management of ECC, results are presented for silver diamine fluoride (SDF, <i>n</i> = 5), nonoperative caries management (NOCM, <i>n</i> = 10), and restorative approaches (RA, <i>n</i> = 8) separately, as different kinds of studies with different levels of evidence were found for the different aspects in the management of ECC. The 5 systematic reviews on SDF showed a high potential for arrest of ECC on a high level of evidence. In NOCM, a low level of evidence for a moderate effect of fluoride varnish in arresting or remineralizing, especially non-cavitated lesions, was assessed. For RA in carious anterior upper primary teeth, a low level of evidence was found for higher failure rates of glass ionomer cement and composite fillings than composite strip crowns even if placed under general anaesthesia and especially compared to other crowns (stainless steel and zirconia). In conclusions, ECC may be managed successfully with nonoperative (SDF, regular fluoride application) and moderately well with operative approaches, but the decision is affected by many other variables such as pulpal involvement, the child’s cooperation, or a general anaesthesia setting.
DOI: 10.6084/m9.figshare.11533932
title: Supplementary Information 2 from Parasite diversity and ecology in a model species, the guppy (<i>Poecilia reticulata</i>) in Trinidad

description: Supplementary Table S1; Individual infection infracommunity data for each male guppy. Supplementary Table S2; Parasite prevalence and mean abundances in 18 populations of guppy.
DOI: 10.6084/m9.figshare.11533932.v1
title: Supplementary Information 2 from Parasite diversity and ecology in a model species, the guppy (<i>Poecilia reticulata</i>) in Trinidad

description: Supplementary Table S1; Individual infection infracommunity data for each male guppy. Supplementary Table S2; Parasite prevalence and mean abundances in 18 populations of guppy.
DOI: 10.6084/m9.figshare.11533923
title: Excel spreadhseet of enamel thickness and crown strength data from Fracture mechanics, enamel thickness and the evolution of molar form in hominins

description: As the tissue most directly responsible for breaking down food in the oral cavity, the form and function of enamel is obviously of evolutionary significance in humans, non-human primates and other vertebrates. Accordingly, a standard metric, relative enamel thickness (RET), has been used for many decades to provide insights into vertebrate and human palaeobiology. Relatively thick enamel has evolved many times in vertebrates including hominoids (the group to which living humans and fossil hominins belong), and this pattern is thought to provide information about taxonomy, phylogeny, functional anatomy and diet. In particular, relatively thick enamel is thought make tooth crowns strong so that they resist fractures associated with eating mechanically resistant foods. Here, we use current models of tooth biomechanics to show that RET is at best only moderately informative of function and diet in living hominoids and fossil hominins, and at worst provides misleading information. We propose a new metric, absolute crown strength, to assess the resistance of teeth to fracture, and identify what may be a novel characteristic of tooth strength in fossil hominins.
DOI: 10.6084/m9.figshare.11533923.v1
title: Excel spreadhseet of enamel thickness and crown strength data from Fracture mechanics, enamel thickness and the evolution of molar form in hominins

description: As the tissue most directly responsible for breaking down food in the oral cavity, the form and function of enamel is obviously of evolutionary significance in humans, non-human primates and other vertebrates. Accordingly, a standard metric, relative enamel thickness (RET), has been used for many decades to provide insights into vertebrate and human palaeobiology. Relatively thick enamel has evolved many times in vertebrates including hominoids (the group to which living humans and fossil hominins belong), and this pattern is thought to provide information about taxonomy, phylogeny, functional anatomy and diet. In particular, relatively thick enamel is thought make tooth crowns strong so that they resist fractures associated with eating mechanically resistant foods. Here, we use current models of tooth biomechanics to show that RET is at best only moderately informative of function and diet in living hominoids and fossil hominins, and at worst provides misleading information. We propose a new metric, absolute crown strength, to assess the resistance of teeth to fracture, and identify what may be a novel characteristic of tooth strength in fossil hominins.
DOI: 10.6084/m9.figshare.11533467
title: Using carbon isotope fractionation to assess soil organic carbon turnover under different grazing intensities over 15 years in desert steppe of Inner Mongolian, China（Raw Data)

description: This is the raw data in Article Using carbon isotope fractionation to assess soil organic carbon turnover under different grazing intensities over 15 years in desert steppe of Inner Mongolian, China. See the paper for the detailed process of sampling and processing.
DOI: 10.6084/m9.figshare.11533224
title: A de novo genome assembly of swamp buffalo (Bubalus bubalis carabanesis) at chromosome-level

description: Swamp buffalo (<i>Bubalus carabanesis</i>), a sub-species of water buffalo (<i>Bubalus bubalis</i>), is an essential farm animal for the drought power and meat production. The chromosomal level genome of swamp buffalo could facilitate to understand the genetic characteristics and genome evolution on this species. In this study, we assembled the high-quality genome of swamp buffalo by using HiSeq short reads, PacBio long reads and Hi-C data. The estimation of the genome size is 2.88 Gb using 21-mer frequency distribution analysis with jellyfish. A final assembly of 2.67Gb genome sequences was obtained, of which 97.91% of the assembled sequences were anchored to 24 pseudochromosomes with a scaffold N50 123.15 Mb and the longest pseudochromosome of 279.78 Mb. We further annotated repetitive elements (47.1%), NcRNA (0.11%) and predicted 18,860 protein-coding genes, of which 96.41% (18,182) were functionally annotated. The chromosomal level genome provides a reference for functional genes mapping and a resource for evolution analysis of swamp buffalo. Moreover, it will be helpful for genetic improvement and molecular breeding of swamp buffalo.