cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7473164.v2
title: 2-DE gel images of Tuber magnatum Pico samples

description: 2-DE gel images related to <i>Tuber magnatum </i>Pico samples collected from three different geographical areas (Isernia, San Miniato, Alba). Twelve (Isernia) or sixteen replicate gels (four for each year of collection, Alba, San Miniato) were performed for each biological sample, depending on the overall duration of the study for each of the sampling locations evaluated.<br>
DOI: 10.6084/m9.figshare.7473191
title: Predicting energy cost from wearable sensors: A dataset of energetic and physiological wearable sensor data from healthy individuals performing multiple physical activities

description: This dataset presents energetic and wearable physiological sensor data from ten healthy subjects performing six physical activities.<br>The activities tested were: walking, incline walking, backwards walking, and running on a treadmill, cycling on a stationary bike, and stair climbing on a stairmill -- all at a variety of speeds and/or intensities (21 total conditions). The following physiological signals were collected from wearable sensors while subjects performed all the activities: - Oxygen consumption and carbon dioxide production- Respiratory exchange ratio- Breath frequency- Minute ventilation - Oxygen saturation (SpO<sub>2</sub>)- Heart rate- Electrodermal activity- Skin temperature - Accelerations, angular velocity, and magnetic field measured from left/right wrist, left/right ankle, left/right foot, pelvis, and chest (IMUs)- Surface EMG from left/right gluteus maximus, rectus femoris, vastus lateralis, semitendinosis, biceps femoris, medial gastrocnemius, soleus, tibialis anterior<br>The data are contained in ten (10) Matlab .mat files (one for each subject). For a complete description of the file structure please see the file: CompleteDataDescription_Ingraham_Ferris_Remy_2018<br>For a complete description of experimental methods please see the published article: Ingraham, Kimberly A., Daniel P. Ferris, and C. David Remy. "Evaluating Physiological Signal Salience for Estimating Metabolic Energy Cost from Wearable Sensors." <i>Journal of Applied Physiology</i> (2019). DOI: 10.1152/japplphysiol.00714.2018<br><br>Edit history: Version 4 is the most current version (as of 3/12/2019). The only changes made between versions were updates to the CompleteDataDescription.pdf file for completeness. <br><br>Please direct any correspondence to: Kimberly Ingraham (kaingr@umich.edu)<br><br><br><br>
DOI: 10.7284/110845
title: TSG (Thermosalinograph) data collected during research cruise MGL1306 using a Sea-Bird SBE-21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7473164.v1
title: 2-DE analysis of Tuber magnatum Pico samples

description: 2-DE gel images related to <i>Tuber magnatum </i>Pico samples collected from three different geographical areas (Isernia, San Miniato, Alba). Twelve (Isernia) or sixteen replicate gels (four for each year of collection, Alba, San Miniato) were performed for each biological sample, depending on the overall duration of the study for each of the sampling locations evaluated.<br>
DOI: 10.6084/m9.figshare.7473191.v3
title: Predicting energy cost from wearable sensors: A dataset of energetic and physiological wearable sensor data from healthy individuals performing multiple physical activities

description: This dataset presents energetic and wearable physiological sensor data from ten healthy subjects performing six physical activities. The activities tested were: walking, incline walking, backwards walking, and running on a treadmill, cycling on a stationary bike, and stair climbing on a stairmill -- all at a variety of speeds and/or intensities (21 total conditions). The following physiological signals were collected from wearable sensors while subjects performed all the activities: - Oxygen consumption and carbon dioxide production- Respiratory exchange ratio- Breath frequency- Minute ventilation - Oxygen saturation (SpO<sub>2</sub>)- Heart rate- Electrodermal activity- Skin temperature - Accelerations, angular velocity, and magnetic field measured from left/right wrist, left/right ankle, left/right foot, pelvis, and chest (IMUs)- Surface EMG from left/right gluteus maximus, rectus femoris, vastus lateralis, semitendinosis, biceps femoris, medial gastrocnemius, soleus, tibialis anterior<br>The data are contained in ten (10) Matlab .mat files (one for each subject). For a complete description of the file structure please see the file: CompleteDataDescription_Ingraham_Ferris_Remy_2018<br>For a complete description of experimental methods please see the published article: Ingraham, Kimberly A., Daniel P. Ferris, and C. David Remy. "Evaluating Physiological Signal Salience for Estimating Metabolic Energy Cost from Wearable Sensors." <i>Journal of Applied Physiology</i> (2019). DOI: 10.1152/japplphysiol.00714.2018<br><br>Please direct any correspondence to: Kimberly Ingraham (kaingr@umich.edu)<br><br><br><br>
DOI: 10.7284/111040
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MGL1307 using a Hawaii UHDAS instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7473104
title: Dataset of the study: Effect of Sexualized Video Games on Online Sexual Harassment

description: Dataset used in the paper: "Effect of Sexualized Video Games on Online Sexual Harassment"
DOI: 10.6084/m9.figshare.7473104.v1
title: Dataset of the study: Effect of Sexualized Video Games on Online Sexual Harassment

description: Dataset used in the paper: "Effect of Sexualized Video Games on Online Sexual Harassment"
DOI: 10.6084/m9.figshare.7473092
title: Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: <b>Background</b> Intramuscular fat (IMF) content and composition have a strong impact on the nutritional and organoleptic properties of porcine meat. The goal of the current work was to compare the patterns of gene expression and the genetic determinism of IMF traits in the porcine <i>gluteus medius </i>(GM) and <i>longissimus dorsi </i>(LD) muscles.
DOI: 10.7284/111027
title: Expendable Probe data collected during research cruise MGL1307 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15131/shef.data.7473068
title: Data for Spatiotemporal Continuum Generation in Polariton Waveguides

description: Experimental and numerical data supporting figures shown in the main text and supplemental material of the paper 'Spatiotemporal Continuum Generation in Polariton Waveguides'.
DOI: 10.6084/m9.figshare.7473065
title: PluminescensTTO1_warwick.gff

description: The lab passaged strain of Photorhabdus luminescens TTO1 was resequenced to account for differences with the original isolate and the published complete genome assembly (GCA_000196155.1). The raw reads (available at SRA: Accession<strong> </strong>SRR8307122 and project PRJNA509896) were trimmed using Sickle and assembled using Spades v3.0.0. Contigs that were at least 500 bp and had a coverage of at least 10 fold were reordered using Mauve based on the published assembly (GCA_000196155.1). They were then artificially concatenated to create a fasta sequence that was annotated using prokkav1.11. <br>
DOI: 10.15131/shef.data.7473068.v1
title: Data for Spatiotemporal Continuum Generation in Polariton Waveguides

description: Experimental and numerical data supporting figures shown in the main text and supplemental material of the paper 'Spatiotemporal Continuum Generation in Polariton Waveguides'.
DOI: 10.6084/m9.figshare.7473065.v1
title: PluminescensTTO1_warwick.gff

description: The lab passaged strain of Photorhabdus luminescens TTO1 was resequenced to account for differences with the original isolate and the published complete genome assembly (GCA_000196155.1). The raw reads (available at SRA: Accession<strong> </strong>SRR8307122 and project PRJNA509896) were trimmed using Sickle and assembled using Spades v3.0.0. Contigs that were at least 500 bp and had a coverage of at least 10 fold were reordered using Mauve based on the published assembly (GCA_000196155.1). They were then artificially concatenated to create a fasta sequence that was annotated using prokkav1.11. <br>
DOI: 10.7284/111035
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1307 using a C&C C-Nav 3050 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7473047
title: Supplemental Material for Bai et al., 2018

description: Tables S1 - S9 and Figure S1.
DOI: 10.6084/m9.figshare.7473047.v1
title: Supplemental Material for Bai et al., 2018

description: Tables S1 - S9 and Figure S1.
DOI: 10.6084/m9.figshare.7473092.v1
title: Comparing the mRNA expression profile and the genetic determinism of intramuscular fat traits in the porcine gluteus medius and longissimus dorsi muscles

description: <b>Background</b> Intramuscular fat (IMF) content and composition have a strong impact on the nutritional and organoleptic properties of porcine meat. The goal of the current work was to compare the patterns of gene expression and the genetic determinism of IMF traits in the porcine <i>gluteus medius </i>(GM) and <i>longissimus dorsi </i>(LD) muscles.
DOI: 10.6084/m9.figshare.7473005
title: Data from: Differential effects of forestry plantations on bird diversity: A global assessment

description: Original data from: Castaño-Villa, G.J., J.V. Estevez, G. Guevara, M. Bohada-Murillo and F.E. Fontúrbel (2019) Differential effects of forestry plantations on bird diversity: A global assessment. Forest Ecology and Management.<br>This entry contains three files:<br><br>(1) richness_data.csv - a CSV file containing the original data from species richness case studies included in the meta-analysis.<br>(2) abundance_data.csv - a CSV file containing the original data from bird abundance case studies included in the meta-analysis.<br>(3) references.txt - a numbered list (corresponding to the ref number in the richness and abundance data files) of the original data sources used.
DOI: 10.6084/m9.figshare.7473014.v1
title: “We’re not happy and no-one is listening”: Understanding Voter and Non-Voter Decisions Behind ‘Brexit’

description: Summary presentation for community members and public members from our Brexit Event on 16th March 2018. <br>Data summaries, primary and secondary coding for the thematic qualitative analysis for those voting to 'Leave', 'Remain', as well as 'Non-voters' is also included.<br><br>
DOI: 10.7284/111037
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1307 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111038
title: Gravimeter data collected during research cruise MGL1307 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7472984
title: Data Set 2: Uncropped Western Blots, Fig. 1b and Fig. 2b

description: This dataset contains 7 uncropped western blots in <b>.pdf </b>format for phosphatase and tensin homolog (PTEN) and isoform PTEN-L in mouse brain and in primary neuronal cell cultures. These correspond to figures 1b and 2b of the related article: Unique properties of PTEN-L contribute to neuroprotection in response to ischemic-like stress.<br>The related study investigates the function and regulation of PTEN-L in neurons in the context of brain ischemia. Exogenous, EGFP-tagged PTEN-L or the shorter variant PTEN were expressed in primary neurons after knock out of endogenous PTEN. Oxygen-glucose deprivation or exposure to 50 µM glutamate were applied to neurons to test their response to ischemic-like stress.<br><b>Methods</b><br><strong> </strong><strong>Figure 1 | PTEN-L protein isoforms vanish upon genomic PTEN ablation in neuronal cultures. </strong>(b) Primary neuronal cultures from conditional PTEN knockout mice were transduced with Cre delivering lentiviral particles. Immunoblotting against PTEN at different time points after Cre transduction showed changes in PTEN protein isoforms, as described in the related research article. Uncropped western blot images are displayed and described respectively.<br><strong> </strong><strong>Figure 2 | PTEN knockout and replacement model in primary neurons to compare PTEN variants under physiological conditions</strong>(b) PTEN isoforms were titrated to replace endogenous PTEN levels. Dose-dependent changes of the pAkt/AKT ratio both cells expressing PTEN:HA and PTEN-L:HA isoforms are reported in the related research article. Uncropped western blot images are displayed and described respectively. <br>
DOI: 10.6084/m9.figshare.7473014.v2
title: “We’re not happy and no-one is listening”: Understanding Voter and Non-Voter Decisions Behind ‘Brexit’

description: Summary presentation for community members and public members from our Brexit Event on 16th March 2018. <br>Data summaries, primary and secondary coding for the thematic qualitative analysis for those voting to 'Leave', 'Remain', as well as 'Non-voters' is also included.<br><br>
DOI: 10.7284/111030
title: Gyrocompass data collected during research cruise MGL1307 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7472951
title: Flow Field generated by a unitary rigid translation of the swimmer body along x from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM4_Figure4_TransationX.plt.gz" contains the zipped data in plt format of the bottom left panel of Figure 4, that is, the modulus of the velocity field generated by a rigid translation along the x-axis of the swimmer
DOI: 10.6084/m9.figshare.7472951.v1
title: Flow Field generated by a unitary rigid translation of the swimmer body along x from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM4_Figure4_TransationX.plt.gz" contains the zipped data in plt format of the bottom left panel of Figure 4, that is, the modulus of the velocity field generated by a rigid translation along the x-axis of the swimmer
DOI: 10.6084/m9.figshare.7472978
title: Sequence Discrete Population analysis of Ramlibacter sp. MAG

description: We evaluated whether the Ramlibacter sp. MAG in our data set was present in other published freshwater data sets. We blasted multiple external freshwater metagenomic data sets (1M reads) to the Ramlibacter MAG contigs and visualized the %identity to the region they were locally aligned. Homogenous distributions across the contigs at high %identity indicate the presence of a closely-related population in this data set.(datasets previously used in Neuenschwander SM, Ghai R, Pernthaler J, Salcher MM. 2017. Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The Isme Journal 12:185)<br>
DOI: 10.6084/m9.figshare.7472945
title: Data relative to Figures 5, 6, 8, 9, 10, 11, 12 from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: We upload a zipped folder (ESM1_DATA_FILES.zip) with text files containing the data of the most representative curves and fields plotted in Figures 5, 6, 8, 9, 10, 11, 12. The folder contains a "readme.txt" file with a detailed description of the content of each file.
DOI: 10.6084/m9.figshare.7472978.v1
title: Sequence Discrete Population analysis of Ramlibacter sp. MAG

description: We evaluated whether the Ramlibacter sp. MAG in our data set was present in other published freshwater data sets. We blasted multiple external freshwater metagenomic data sets (1M reads) to the Ramlibacter MAG contigs and visualized the %identity to the region they were locally aligned. Homogenous distributions across the contigs at high %identity indicate the presence of a closely-related population in this data set.(datasets previously used in Neuenschwander SM, Ghai R, Pernthaler J, Salcher MM. 2017. Microdiversification in genome-streamlined ubiquitous freshwater Actinobacteria. The Isme Journal 12:185)<br>
DOI: 10.7284/111036
title: INS (Inertial Navigation System) data collected during research cruise MGL1307 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7472945.v1
title: Data relative to Figures 5, 6, 8, 9, 10, 11, 12 from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: We upload a zipped folder (ESM1_DATA_FILES.zip) with text files containing the data of the most representative curves and fields plotted in Figures 5, 6, 8, 9, 10, 11, 12. The folder contains a "readme.txt" file with a detailed description of the content of each file.
DOI: 10.7284/111039
title: INS (Inertial Navigation System) data collected during research cruise MGL1307 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7472930
title: Flow Field generated by the beating flagellum from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM2_Figure4_Beating_Motion.plt.gz" contains the zipped data in plt format of the top left panel of Figure 4, that is, the modulus of the velocity field generated by the beating of the flagellum
DOI: 10.6084/m9.figshare.7472930.v1
title: Flow Field generated by the beating flagellum from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM2_Figure4_Beating_Motion.plt.gz" contains the zipped data in plt format of the top left panel of Figure 4, that is, the modulus of the velocity field generated by the beating of the flagellum
DOI: 10.6084/m9.figshare.7472933
title: Flow Field generated by a unitary rigid translation of the swimmer body along y from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM4_Figure4_TransationY.plt.gz" contains the zipped data in plt format of the bottom left panel of Figure 4, that is, the modulus of the velocity field generated by a rigid translation along the y-axis of the swimmer
DOI: 10.6084/m9.figshare.7472933.v1
title: Flow Field generated by a unitary rigid translation of the swimmer body along y from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM4_Figure4_TransationY.plt.gz" contains the zipped data in plt format of the bottom left panel of Figure 4, that is, the modulus of the velocity field generated by a rigid translation along the y-axis of the swimmer
DOI: 10.6084/m9.figshare.7472936
title: Flow Field generated by a unitary rigid rotation of the swimmer body from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM3_Figure4_Rigid_Rotation.plt.gz" contains the zipped data in plt format of the top right panel of Figure 4, that is, the modulus of the velocity field generated by a rigid rotation of the swimmer
DOI: 10.6084/m9.figshare.7472936.v1
title: Flow Field generated by a unitary rigid rotation of the swimmer body from On the limitations of some popular numerical models of flagellated microswimmers: importance of long-range forces and flagellum waveform

description: File "ESM3_Figure4_Rigid_Rotation.plt.gz" contains the zipped data in plt format of the top right panel of Figure 4, that is, the modulus of the velocity field generated by a rigid rotation of the swimmer
DOI: 10.7284/111029
title: Magnetometer data collected during research cruise MGL1307 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7472903
title: p = 0.001

description: pressure = 0.001<br>
DOI: 10.6084/m9.figshare.7472903.v1
title: p = 0.001

description: pressure = 0.001<br>
DOI: 10.25375/uct.7472852
title: Outcomes and challenges of a kidney transplant programme at Groote Schuur Hospital, Cape Town: a South African perspective

description: <b>Method</b>: Data were collected on all patients who underwent a kidney transplant at GSH from 1st July 2010 to the 30 June 2015. Analyses were performed to assess baseline characteristics, graft and patient survival, as well as predictors of poor outcome. <b>Results</b> 198 patients were transplanted. The mean age was 38 +/- 10.5 years, 127 (64.1%) were male, and 86 (43.4%) were of African ethnicity. Deceased donor organs were used for 130 (66.7%) patients and living donors for 65 (33.3%). There were &gt; 5 HLA mismatches in 58.9% of transplants. Sepsis was the commonest cause of death and delayed graft function [DGF] occurred in 41 (21.4%) recipients. Patient survival was 90.4% at 1 year and 83.1% at 5 years. Graft survival was 89.4% at 1 year and 80.0% at 5 years. DGF (HR 2.83 (1.12 – 7.19), p value = 0.028) and recipient age &gt; 40 years (HR 3.12 (1.26 – 7.77), p value = 0.014) were predictors of death.<br><br>Ethics Statement:Ethical approval for the study was received from the human research ethics committee at University of Cape Town [HREC: 759/2014]. This approval permitted a folder review of patients transplanted within the specified time period. Informed consent for folder review was waived. All clinical and laboratory data was obtained from routine clinic visits (set out by KDIGO best clinical practice guidelines). All kidney biopsies were only performed for clinical indications including unexplained haematuria, proteinuria or rising creatinine. For confidentiality and anonymity all patients were anonymised prior to statistical analysis. The information was stored on a password protected research computer, only the primary and sub investigators had access to the data. None of the transplant donors were from a vulnerable population and all donors or next of kin provided written informed consent that was freely given. The consent for deceased donation was obtained by dedicated transplant sisters who work as part of the transplant team. All Living non-related donors are ethically evaluated by a national Ministry Advisory Committee. Groote Schuur Hospital transplant department complies with the Declaration of Istanbul.<br>
DOI: 10.7284/111033
title: Meteorological Station data collected during research cruise MGL1307 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition