cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-zje-2k44
title: PAN-00085922 - smelt waste or lump of lead

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00085922&lt;/p&gt;
description: Modified: 2021-12-16T15:26:09+01:00
DOI: 10.3535/b4c-9p3-laz
title: Lexias Boisduval, 1832

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/g66-xpf-14d
title: Xanthoneura corissa (Hewitson, 1876)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.7yez6s
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periophthalmus malaccensis Eggert, 1935"
 ]
}

 The dataset includes 33 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000483-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sctr63
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pieris balcana Lorkovic, 1970)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 84 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000481-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59gqqf
title: Occurrence Download

description: A dataset containing 41397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is one of (FALSE)",
 "OccurrenceStatus is one of (Present)",
 "HasCoordinate is one of (TRUE)",
 "Geometry POLYGON ((-89.9950786389117 35.15099806124715, -89.99633740033656 35.14214983071126, -89.98285902590537 35.140868763977906, -89.98112274051614 35.15022740576046, -89.9950786389117 35.15099806124715))",
 "Year is greater than or equal to 2008",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 41397 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000480-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5n6gw4
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Eumops perotis (Schinz, 1821)",
 "Year 1970-2025"
 ]
}

 The dataset includes 461 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000482-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w68bgx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma chiapensis Britton & Rose)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000485-250324175209820/datasets/export for details.
DOI: 10.15468/dl.h74d67
title: Occurrence Download

description: A dataset containing 6627 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herpetofauna del Estado de Veracruz"
 ]
}

 The dataset includes 6627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000487-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m924v7
title: Occurrence Download

description: A dataset containing 3301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eleutheronema tetradactylum (Shaw, 1804)"
 ]
}

 The dataset includes 3301 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000489-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcxtnw
title: Occurrence Download

description: A dataset containing 493 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Switzerland",
 "OccurrenceStatus is Present",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 493 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000488-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nubhh9
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma desmostachys (Benth.) Benth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000491-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2ygxyh
title: Occurrence Download

description: A dataset containing 13496 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Etheostoma flabellare Rafinesque, 1819"
 ]
}

 The dataset includes 13496 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000492-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucmnzg
title: Occurrence Download

description: A dataset containing 6627 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herpetofauna del Estado de Veracruz"
 ]
}

 The dataset includes 6627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000493-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3akeu
title: Occurrence Download

description: A dataset containing 660 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Telmatobius culeus (Garman, 1876), Ismene amancaes (Ruiz & Pav.) Herb.)"
 ]
}

 The dataset includes 660 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000494-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adtt4h
title: Occurrence Download

description: A dataset containing 538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Telmatobius culeus (Garman, 1876)"
 ]
}

 The dataset includes 538 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000495-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jukb4f
title: Occurrence Download

description: A dataset containing 3220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma divaricatum (Jacq.) J.F.Macbr., Lysiloma divaricatum (Jacq.) Benth., 1846)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3220 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000496-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6pa6k
title: Occurrence Download

description: A dataset containing 538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Telmatobius culeus (Garman, 1876)"
 ]
}

 The dataset includes 538 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000498-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfuy3x
title: Occurrence Download

description: A dataset containing 616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "TaxonKey is Eptesicus brasiliensis (Desmarest, 1819)",
 "Year 1970-2025"
 ]
}

 The dataset includes 616 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000497-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68mgut
title: Occurrence Download

description: A dataset containing 538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Telmatobius culeus (Garman, 1876)"
 ]
}

 The dataset includes 538 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000499-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fuhgpu
title: Occurrence Download

description: A dataset containing 538 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Telmatobius culeus (Garman, 1876)"
 ]
}

 The dataset includes 538 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000500-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48at6x
title: Occurrence Download

description: A dataset containing 14656 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bagre marinus (Mitchill, 1815)"
 ]
}

 The dataset includes 14656 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000501-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15079766
title: The dataset of the published article (titled "Formation of Spongy Clinopyroxene: Insights from Eclogitic Inclusions in Diamonds", Journal of Petrology)

description: Table 1, Major element composition (in wt%) of primary cores and spongy rims of the studied clinopyroxene inclusions.Table 2, P-T parameters of spongy clinopyroxene

Supplementary TablesTable S1. FTIR, photoluminescence characteristics and morphology features of the studied diamondsTable S2. Chemical composition of sulfide inclusions from the studied diamonds Table S3. Summary of pMELTS modelling for the studied clinopyroxene inclusionsTable S4. pMELTS modelling for U-530 clinopyroxene inclusionTable S5. pMELTS modelling for U-345 clinopyroxene inclusionTable S6. pMELTS modelling for Cln-320 clinopyroxene inclusionTable S7. pMELTS modelling for Cln-268 clinopyroxene inclusionTable S8. pMELTS modelling for Cln-285 clinopyroxene inclusionTable S9. pMELTS modelling for the clinopyroxene inclusions W1, W5 and W14 reported by Taylor et al. (2000)Table S10. Raman peaks within the range of 1370–4500 cm–1 for the primary cores and spongy rims of the studied clinopyroxene inclusions

Supp-video S1-U-345_Surfance inclusion (CT-scan)Supp-video S2-U-345_inclusion inside (CT-scan)
DOI: 10.5281/zenodo.15079767
title: The dataset of the published article (titled "Formation of Spongy Clinopyroxene: Insights from Eclogitic Inclusions in Diamonds", Journal of Petrology)

description: Table 1, Major element composition (in wt%) of primary cores and spongy rims of the studied clinopyroxene inclusions.Table 2, P-T parameters of spongy clinopyroxene

Supplementary TablesTable S1. FTIR, photoluminescence characteristics and morphology features of the studied diamondsTable S2. Chemical composition of sulfide inclusions from the studied diamonds Table S3. Summary of pMELTS modelling for the studied clinopyroxene inclusionsTable S4. pMELTS modelling for U-530 clinopyroxene inclusionTable S5. pMELTS modelling for U-345 clinopyroxene inclusionTable S6. pMELTS modelling for Cln-320 clinopyroxene inclusionTable S7. pMELTS modelling for Cln-268 clinopyroxene inclusionTable S8. pMELTS modelling for Cln-285 clinopyroxene inclusionTable S9. pMELTS modelling for the clinopyroxene inclusions W1, W5 and W14 reported by Taylor et al. (2000)Table S10. Raman peaks within the range of 1370–4500 cm–1 for the primary cores and spongy rims of the studied clinopyroxene inclusions

Supp-video S1-U-345_Surfance inclusion (CT-scan)Supp-video S2-U-345_inclusion inside (CT-scan)
DOI: 10.5281/zenodo.13315667
title: Data associated with "Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut"

description: Clostridioides difficile colonizes up to 30-40% of community-dwelling adults without causing disease. C. difficile infections (CDIs) are the leading cause of antibiotic-associated diarrhea in the U.S. and typically develop in pre-colonized individuals following disruption of the gut microbiota due to antibiotic or chemotherapy treatments. Further treatment of CDI with antibiotics is not always effective and can lead to antibiotic resistance and recurrent infections (rCDI). The most effective treatment for rCDI is the reestablishment of an intact microbiota via fecal microbiota transplants (FMTs). However, the success of FMTs has been difficult to generalize to other diseases because the microbial interactions that prevent colonization and facilitate the successful clearance of C. difficile are still only partially understood. Here we show how microbial community-scale metabolic models (MCMMs) accurately predicted known instances of C. difficile colonization susceptibility or resistance in vitro and in vivo. MCMMs provide detailed mechanistic insights into the ecological interactions that govern C. difficile colonization, like cross-feeding or competition involving metabolites like succinate, trehalose, and ornithine, which differ from person to person. Indeed, three distinct C. difficile metabolic niches emerge from our MCMMs, two associated with growth and one that represents non-growth, which are consistently observed across 15,204 individuals from five independent cohorts. Finally, we show how MCMMs can predict personalized colonization and C. difficile growth suppression for an existing probiotic cocktail (6 of 8 VE303 strains) designed to replace FMTs for the treatment rCDI, and we identify new probiotic targets for future validation. Overall, this powerful modeling approach predicts personalized C. difficile colonization risk and with further validation may be useful in assessing probiotic treatment efficacy. MCMMs could be extended to understand the mechanistic underpinnings of personalized colonization of other opportunistic bacterial pathogens, beneficial probiotic organisms, or more complex microbial consortia.
DOI: 10.5281/zenodo.13315668
title: Data associated with "Personalized Clostridioides difficile engraftment risk prediction and probiotic therapy assessment in the human gut"

description: Clostridioides difficile colonizes up to 30-40% of community-dwelling adults without causing disease. C. difficile infections (CDIs) are the leading cause of antibiotic-associated diarrhea in the U.S. and typically develop in pre-colonized individuals following disruption of the gut microbiota due to antibiotic or chemotherapy treatments. Further treatment of CDI with antibiotics is not always effective and can lead to antibiotic resistance and recurrent infections (rCDI). The most effective treatment for rCDI is the reestablishment of an intact microbiota via fecal microbiota transplants (FMTs). However, the success of FMTs has been difficult to generalize to other diseases because the microbial interactions that prevent colonization and facilitate the successful clearance of C. difficile are still only partially understood. Here we show how microbial community-scale metabolic models (MCMMs) accurately predicted known instances of C. difficile colonization susceptibility or resistance in vitro and in vivo. MCMMs provide detailed mechanistic insights into the ecological interactions that govern C. difficile colonization, like cross-feeding or competition involving metabolites like succinate, trehalose, and ornithine, which differ from person to person. Indeed, three distinct C. difficile metabolic niches emerge from our MCMMs, two associated with growth and one that represents non-growth, which are consistently observed across 15,204 individuals from five independent cohorts. Finally, we show how MCMMs can predict personalized colonization and C. difficile growth suppression for an existing probiotic cocktail (6 of 8 VE303 strains) designed to replace FMTs for the treatment rCDI, and we identify new probiotic targets for future validation. Overall, this powerful modeling approach predicts personalized C. difficile colonization risk and with further validation may be useful in assessing probiotic treatment efficacy. MCMMs could be extended to understand the mechanistic underpinnings of personalized colonization of other opportunistic bacterial pathogens, beneficial probiotic organisms, or more complex microbial consortia.
DOI: 10.6084/m9.figshare.28655726
title: test

description: test
DOI: 10.15468/dl.9hwtkf
title: Occurrence Download

description: A dataset containing 6627 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Herpetofauna del Estado de Veracruz"
 ]
}

 The dataset includes 6627 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000502-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9fsyyh
title: Occurrence Download

description: A dataset containing 153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Periophthalmus minutus Eggert, 1935"
 ]
}

 The dataset includes 153 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000504-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rkt25
title: Occurrence Download

description: A dataset containing 1839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma latisiliquum (L.) Benth.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1839 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000503-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.betq59
title: Occurrence Download

description: A dataset containing 1226 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Human Observation, Specimen)",
 "TaxonKey is Eptesicus furinalis (d'Orbigny, 1847)",
 "Year 1970-2025"
 ]
}

 The dataset includes 1226 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000506-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmqjvc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lysiloma thornberi Britton & Rose)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000507-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpazyv
title: Occurrence Download

description: A dataset containing 2587290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pieris napi (Linnaeus, 1758))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1981",
 "Geometry POLYGON((-30 25,50 25,50 75,-30 75,-30 25))"
 ]
}

 The dataset includes 2587290 records from 2805 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000484-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17226328
title: Modeling secondary organic from β-caryophyllene: role of extremely low-volatile organic compounds on new particle formation and evaluation of the SOA composition

description: 1. Dataset Description

This dataset contains the basic set of input files required to reproduce the 298K experiment from the study by Gao et al. (2022) on secondary organic aerosol (SOA) formation using the autoX-MCM mechanism. These files are configured to run with the SSH-aerosol v2.0 model. 

**SSH-aerosol v2.0 model**: The core model can be obtained from: https://github.com/sshaerosol/ssh-aerosol

2. Dataset Contents and File Structure

The repository is organized as follows:

2.1 'autoX-MCM/' Directory

This directory contains the necessary files for generating and running the **autoX-MCM** mechanism at 298K.

- BCARY.reaction_298: Contains the detailed list of chemical reactions.

- BCARY.species: Contains all chemical species involved in the mechanism.

- BCARY.RO2: Contains all the peroxy radical (RO2) species involved in the mechanism

2.2 'mMCM/' Directory

This directory contains the necessary files for generating and running the **mMCM** mechanism at 298K, including BCARY.reaction_298, BCARY.species, and BCARY.RO2. 

2.3 'inputs/' Directory

This directory provides the initial conditions and physicochemical characteristics of the aerosols required for the model run.

2.4 '298K.ssh' (root directory)

The main **configuration file**, which defines the simulation settings, environmental parameters, and paths to other input files.

Attention

The experiemental data used for model evaluation are available from the corresponding  authors of Gao et al. (2022) upon reasonable request.