cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6683849
title: Evaluation of student learning, self-efficacy, and perception of the value of geologic monitoring from <i>Living on the Edge</i>, an InTeGrate curriculum module

description: The InTeGrate curriculum, <i>Living on the Edge: Building Resilient Societies on Active Plate Margins</i> (LOE)<i>,</i> explores geologic hazards and related societal risks at plate boundaries. The curriculum incorporates research-based pedagogical practices and the use of geologic data for students to analyze and interpret. Materials were developed for broad use and have been implemented at 3 institutions in a range of undergraduate geoscience classroom settings. Here we present an analysis of student learning based on new data collected with a pre- and post-LOE curriculum instrument. Results indicate increased student learning in all types of classrooms examined. Learning gains occur in large classes (50–140 students) that spent the least amount of time on each unit (≤ 50 minutes), but students achieve even larger gains in small classes (&lt; 15 students) that spent more time on curriculum (≥ 75 minutes per curricular unit). Learning gains occured in all class types in activities that required application of information as well as in items that required only simple recall. Students’ self-efficacy in their ability to accurately identify factors that determine hazards and risks at plate boundaries increased by at least 1 point on a 5-point scale following their participation in the curriculum. Most students agree (or strongly agree) that geologic monitoring is likely to be valuable to them and to society, which makes LOE activities relevant to them and correlates with their learning. Significant student learning also occurred in courses taught by an instructor who was not an LOE author, which supports the goal that InTeGrate materials can be widely used.
DOI: 10.6084/m9.figshare.6683849.v1
title: Evaluation of student learning, self-efficacy, and perception of the value of geologic monitoring from <i>Living on the Edge</i>, an InTeGrate curriculum module

description: The InTeGrate curriculum, <i>Living on the Edge: Building Resilient Societies on Active Plate Margins</i> (LOE)<i>,</i> explores geologic hazards and related societal risks at plate boundaries. The curriculum incorporates research-based pedagogical practices and the use of geologic data for students to analyze and interpret. Materials were developed for broad use and have been implemented at 3 institutions in a range of undergraduate geoscience classroom settings. Here we present an analysis of student learning based on new data collected with a pre- and post-LOE curriculum instrument. Results indicate increased student learning in all types of classrooms examined. Learning gains occur in large classes (50–140 students) that spent the least amount of time on each unit (≤ 50 minutes), but students achieve even larger gains in small classes (&lt; 15 students) that spent more time on curriculum (≥ 75 minutes per curricular unit). Learning gains occured in all class types in activities that required application of information as well as in items that required only simple recall. Students’ self-efficacy in their ability to accurately identify factors that determine hazards and risks at plate boundaries increased by at least 1 point on a 5-point scale following their participation in the curriculum. Most students agree (or strongly agree) that geologic monitoring is likely to be valuable to them and to society, which makes LOE activities relevant to them and correlates with their learning. Significant student learning also occurred in courses taught by an instructor who was not an LOE author, which supports the goal that InTeGrate materials can be widely used.
DOI: 10.6084/m9.figshare.6683807
title: sleepData.mat

description: The Sleep database contains forty-three 20-min segments of recording from 43 children (age = 9.1±4.1, Apnea/Hypopnea Index = 8.9± 7.9) referred to the British Columbia Children’s Hospital for overnight standard polysomnography (PSG). <br>
DOI: 10.6084/m9.figshare.6683807.v2
title: sleepData.mat

description: The Sleep database contains forty-three 20-min segments of recording from 43 children (age = 9.1±4.1, Apnea/Hypopnea Index = 8.9± 7.9) referred to the British Columbia Children’s Hospital for overnight standard polysomnography (PSG). <br>
DOI: 10.6084/m9.figshare.6683807.v1
title: sleepData.mat

description: The Sleep database contains forty-three 20-min segments of recording from 43 children (age = 9.1±4.1, Apnea/Hypopnea Index = 8.9± 7.9) referred to the British Columbia Children’s Hospital for overnight standard polysomnography (PSG). <br>
DOI: 10.6084/m9.figshare.6683726
title: Supplementary Material for: Prognostic Value of Stimulated Thyroglobulin Levels at the Time of Radioiodine Administration in Differentiated Thyroid Cancer

description: <b><i>Objective:</i></b> The prognostic value of stimulated thyroglobulin (sTg) and Tg-related parameters prior to and immediately after radioactive iodine (RAI) administration was assessed in a cohort of patients presenting with differentiated thyroid cancer (DTC) as a predictor of recurrent or progressive structural disease. <b><i>Methods:</i></b> Clinical records of 180 DTC patients were retrospectively reviewed, and serum TSH, Tg, and Tg antibodies were recorded just before RAI administration (pre-) and at the time of whole body scanning (post-). Based on the results of initial staging and RAI scintigraphy, patients were divided into two groups: those who were considered to be structurally disease-free after thyroidectomy and RAI (group 1) and those who were not (group 2). Univariate analyses were performed for pre-Tg, ratioTg (post-Tg/pre-Tg), and other clinical and pathological markers for long-term outcome, as well as separate bivariate analyses focusing on pre-Tg to correct for possible confounders. Different pre-Tg cut-off values for predicting structural disease recurrence were assessed in a subgroup of patients in group 1 prepared with thyroid hormone withdrawal. <b><i>Results:</i></b> In group 1, (<i>n</i> = 166) male gender, higher T-stage and both Tg-related parameters proved to be significant risk factors for structural disease relapse. Of all candidate variables, only higher T-stage served to predict progressive structural disease in group 2 (<i>n</i> = 14). Subgroup analysis showed a negative predictive value of 91.67% for pre-Tg &lt; 10 µg/L. <b><i>Conclusion:</i></b> The sTg value at the time of RAI administration may be helpful in predicting structural disease recurrence in patients with DTC.
DOI: 10.6084/m9.figshare.6683726.v1
title: Supplementary Material for: Prognostic Value of Stimulated Thyroglobulin Levels at the Time of Radioiodine Administration in Differentiated Thyroid Cancer

description: <b><i>Objective:</i></b> The prognostic value of stimulated thyroglobulin (sTg) and Tg-related parameters prior to and immediately after radioactive iodine (RAI) administration was assessed in a cohort of patients presenting with differentiated thyroid cancer (DTC) as a predictor of recurrent or progressive structural disease. <b><i>Methods:</i></b> Clinical records of 180 DTC patients were retrospectively reviewed, and serum TSH, Tg, and Tg antibodies were recorded just before RAI administration (pre-) and at the time of whole body scanning (post-). Based on the results of initial staging and RAI scintigraphy, patients were divided into two groups: those who were considered to be structurally disease-free after thyroidectomy and RAI (group 1) and those who were not (group 2). Univariate analyses were performed for pre-Tg, ratioTg (post-Tg/pre-Tg), and other clinical and pathological markers for long-term outcome, as well as separate bivariate analyses focusing on pre-Tg to correct for possible confounders. Different pre-Tg cut-off values for predicting structural disease recurrence were assessed in a subgroup of patients in group 1 prepared with thyroid hormone withdrawal. <b><i>Results:</i></b> In group 1, (<i>n</i> = 166) male gender, higher T-stage and both Tg-related parameters proved to be significant risk factors for structural disease relapse. Of all candidate variables, only higher T-stage served to predict progressive structural disease in group 2 (<i>n</i> = 14). Subgroup analysis showed a negative predictive value of 91.67% for pre-Tg &lt; 10 µg/L. <b><i>Conclusion:</i></b> The sTg value at the time of RAI administration may be helpful in predicting structural disease recurrence in patients with DTC.
DOI: 10.6084/m9.figshare.6683675
title: Granato et al. ISME 2018 - Raw Data

description: Contains raw data for the following publication:<br>"Low spatial structure and selection against secreted virulence factors attenuates pathogenicity in <i>Pseudomonas aeruginosa</i>" (The ISME Journal, 2018).
DOI: 10.6084/m9.figshare.6683669
title: Analysis of predictors of opioid-free analgesia for management of acute post-surgical pain in the United States

description: <b>Objectives:</b> Utilization of opioid-free analgesia (OFA) for post-surgical pain is a growing trend to counter the risks of opioid abuse and opioid-related adverse drug events (ORADEs). However, utilization patterns of OFA have not been examined. In this study, we investigated the utilization patterns and predictors of OFA in a surgical population in the United States. <b>Methods:</b> Analysis of the Cerner Health Facts database (January 2011 to December 2015) was conducted to describe hospital and patient characteristics associated with OFA. Baseline characteristics, such as age, gender, race, discharge status, year of admission and chronic comorbidities at index admission were collected. Hospital characteristics and payer type at index admission were collected as reported in the electronic health record database. Descriptive statistics and logistic regression were used to identify statistically significant predictors of OFA on patient and institutional levels. <b>Results:</b> The study identified 10,219 patients, from 187 hospitals, who received post-surgical OFA and 255,196 patients who received post-surgical opioids. OFA rates varied considerably by hospital. Patients more likely to receive OFA were older (OR = 1.06, 95% CI [1.03, 1.10]; <i>p</i> p p = .001) or psychosis (OR = 1.18, 95% CI [1.01, 1.37]; <i>p</i> = .030). Patients with obesity and depression were less likely to receive OFA (OR = 0.80, 95% CI [0.67, 0.95]; <i>p</i> = .010 OR = 0.85, 95% CI [0.73, 0.98]; <i>p</i> = .030, respectively). <b>Conclusions:</b> Use of post-surgical OFA was limited overall and was not favored in some patient groups prone to ORADEs, indicating missed opportunities to reduce opioid use and ORADE incidence. A substantial proportion of OFA patients was contributed by a few hospitals with especially high rates of OFA, suggesting that hospital policies, institutional structure and cross-functional departmental commitment to reducing opioid use may play a large role in the implementation of OFA.
DOI: 10.6084/m9.figshare.6683669.v1
title: Analysis of predictors of opioid-free analgesia for management of acute post-surgical pain in the United States

description: <b>Objectives:</b> Utilization of opioid-free analgesia (OFA) for post-surgical pain is a growing trend to counter the risks of opioid abuse and opioid-related adverse drug events (ORADEs). However, utilization patterns of OFA have not been examined. In this study, we investigated the utilization patterns and predictors of OFA in a surgical population in the United States. <b>Methods:</b> Analysis of the Cerner Health Facts database (January 2011 to December 2015) was conducted to describe hospital and patient characteristics associated with OFA. Baseline characteristics, such as age, gender, race, discharge status, year of admission and chronic comorbidities at index admission were collected. Hospital characteristics and payer type at index admission were collected as reported in the electronic health record database. Descriptive statistics and logistic regression were used to identify statistically significant predictors of OFA on patient and institutional levels. <b>Results:</b> The study identified 10,219 patients, from 187 hospitals, who received post-surgical OFA and 255,196 patients who received post-surgical opioids. OFA rates varied considerably by hospital. Patients more likely to receive OFA were older (OR = 1.06, 95% CI [1.03, 1.10]; <i>p</i> p p = .001) or psychosis (OR = 1.18, 95% CI [1.01, 1.37]; <i>p</i> = .030). Patients with obesity and depression were less likely to receive OFA (OR = 0.80, 95% CI [0.67, 0.95]; <i>p</i> = .010 OR = 0.85, 95% CI [0.73, 0.98]; <i>p</i> = .030, respectively). <b>Conclusions:</b> Use of post-surgical OFA was limited overall and was not favored in some patient groups prone to ORADEs, indicating missed opportunities to reduce opioid use and ORADE incidence. A substantial proportion of OFA patients was contributed by a few hospitals with especially high rates of OFA, suggesting that hospital policies, institutional structure and cross-functional departmental commitment to reducing opioid use may play a large role in the implementation of OFA.
DOI: 10.6084/m9.figshare.6683666
title: HeterosYeast Protein Functional Annotation for Petrizzelli et al. 2018

description: HeterosYeast protein functional category classification
DOI: 10.6084/m9.figshare.6683666.v1
title: HeterosYeast Protein Functional Annotation

description: HeterosYeast protein functional category classification
DOI: 10.6084/m9.figshare.6683666.v3
title: HeterosYeast Protein Functional Annotation for Petrizzelli et al. 2018

description: HeterosYeast protein functional category classification
DOI: 10.6084/m9.figshare.6683666.v2
title: HeterosYeast Protein Functional Annotation

description: HeterosYeast protein functional category classification
DOI: 10.6084/m9.figshare.6683639
title: Bird Audio Detection: example submission file for DCASE Challenge 2018 Task 3

description: See https://figshare.com/articles/Bird_Audio_Detection_public_data_for_DCASE_Challenge_2018_Task_3/6026471 for more info<br>
DOI: 10.6084/m9.figshare.6683639.v1
title: Bird Audio Detection: example submission file for DCASE Challenge 2018 Task 3

description: See https://figshare.com/articles/Bird_Audio_Detection_public_data_for_DCASE_Challenge_2018_Task_3/6026471 for more info<br>
DOI: 10.6084/m9.figshare.6683624
title: PopPUNK databases

description: Fitted PopPUNK databases for ten species. Can be queried using PopPUNK --assign-query mode.
DOI: 10.6084/m9.figshare.6683507.v1
title: Chloroplast Genome Variation of Corylus

description: The supplementary materials of the six chloroplast genomes variation.
DOI: 10.6084/m9.figshare.6683447
title: Picea abies natural regeneration dataset

description: There are two datasets in this repository:1. plots - it covers densities of natural P. abies regeneration, distance from river, DIFN (light availability) and soil pH 2. Vegetation - abundances of understory plant species within plots All data comes from study plots (squares 25 m2) established in Góry Stołowe National Park, Poland.
DOI: 10.6084/m9.figshare.6683438
title: The responsiveness of legislative actors to stakeholders’ demands in the European Union

description: This study examines the extent to which stakeholders’ demands are represented by the Commission, European Parliament, and national governments in the Council when legislative proposals are debated. We formulate and test propositions from resource exchange theory to explain variation in the responsiveness of EU actors to various stakeholders. Our research design integrates the study of the formative and decision-making stages of the legislative process, which are often studied in isolation. We combine new information from detailed qualitative content analysis of consultation documents with an established dataset on subsequent legislative decision-making. The findings indicate that a broad range of stakeholders’ demands are reflected in the positions taken by the national and supranational actors involved in the EU's legislative process, but also that there is considerable variation in the extent to which different EU actors respond to stakeholders of different types and origins.
DOI: 10.6084/m9.figshare.6683438.v1
title: The responsiveness of legislative actors to stakeholders’ demands in the European Union

description: This study examines the extent to which stakeholders’ demands are represented by the Commission, European Parliament, and national governments in the Council when legislative proposals are debated. We formulate and test propositions from resource exchange theory to explain variation in the responsiveness of EU actors to various stakeholders. Our research design integrates the study of the formative and decision-making stages of the legislative process, which are often studied in isolation. We combine new information from detailed qualitative content analysis of consultation documents with an established dataset on subsequent legislative decision-making. The findings indicate that a broad range of stakeholders’ demands are reflected in the positions taken by the national and supranational actors involved in the EU's legislative process, but also that there is considerable variation in the extent to which different EU actors respond to stakeholders of different types and origins.
DOI: 10.6084/m9.figshare.12891032.v1
title: SA nurse dataset

description: This dataset was collected during field research with 71 nurses in 2015 in Johannesburg, South Africa
DOI: 10.6084/m9.figshare.12891032
title: SA nurse dataset

description: This dataset was collected during field research with 71 nurses in 2015 in Johannesburg, South Africa
DOI: 10.6084/m9.figshare.6683159
title: Chronic social stress induces DNA methylation changes at an evolutionary conserved intergenic region in chromosome X

description: Chronic stress resulting from prolonged exposure to negative life events increases the risk of mood and anxiety disorders. Although chronic stress can change gene expression relevant for behavior, molecular regulators of this change have not been fully determined. One process that could play a role is DNA methylation, an epigenetic process whereby a methyl group is added onto nucleotides, predominantly cytosine in the CpG context, and which can be induced by chronic stress. It is unknown to what extent chronic social defeat, a model of human social stress, influences DNA methylation patterns across the genome. Our study addressed this question by using a targeted-capture approach called Methyl-Seq to investigate DNA methylation patterns of the dentate gyrus at putative regulatory regions across the mouse genome from mice exposed to 14 days of social defeat. Findings were replicated in independent cohorts by bisulfite-pyrosequencing. Two differentially methylated regions (DMRs) were identified. One DMR was located at intron 9 of <i>Drosha</i>, and it showed reduced methylation in stressed mice. This observation replicated in one of two independent cohorts. A second DMR was identified at an intergenic region of chromosome X, and methylation in this region was increased in stressed mice. This methylation difference replicated in two independent cohorts and in Major Depressive Disorder (MDD) postmortem brains. These results highlight a region not previously known to be differentially methylated by chronic social defeat stress and which may be involved in MDD.
DOI: 10.6084/m9.figshare.6683159.v1
title: Chronic social stress induces DNA methylation changes at an evolutionary conserved intergenic region in chromosome X

description: Chronic stress resulting from prolonged exposure to negative life events increases the risk of mood and anxiety disorders. Although chronic stress can change gene expression relevant for behavior, molecular regulators of this change have not been fully determined. One process that could play a role is DNA methylation, an epigenetic process whereby a methyl group is added onto nucleotides, predominantly cytosine in the CpG context, and which can be induced by chronic stress. It is unknown to what extent chronic social defeat, a model of human social stress, influences DNA methylation patterns across the genome. Our study addressed this question by using a targeted-capture approach called Methyl-Seq to investigate DNA methylation patterns of the dentate gyrus at putative regulatory regions across the mouse genome from mice exposed to 14 days of social defeat. Findings were replicated in independent cohorts by bisulfite-pyrosequencing. Two differentially methylated regions (DMRs) were identified. One DMR was located at intron 9 of <i>Drosha</i>, and it showed reduced methylation in stressed mice. This observation replicated in one of two independent cohorts. A second DMR was identified at an intergenic region of chromosome X, and methylation in this region was increased in stressed mice. This methylation difference replicated in two independent cohorts and in Major Depressive Disorder (MDD) postmortem brains. These results highlight a region not previously known to be differentially methylated by chronic social defeat stress and which may be involved in MDD.
DOI: 10.6084/m9.figshare.6683013
title: Status quo bias

description: Data to the article "No evidence that lateral preferences predict individual differences in the tendency to update mental representations: A replication-extension study", published in Collabra:Psychology.
DOI: 10.6084/m9.figshare.6683013.v1
title: Status quo bias

description: Data to the article "No evidence that lateral preferences predict individual differences in the tendency to update mental representations: A replication-extension study", published in Collabra:Psychology.
DOI: 10.6084/m9.figshare.6683004
title: US 2016 Election Data used for classification of Organized Behavior in Twitter

description: TweetIds and Collections<br> p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 8.0px Helvetica} Erdem Beğenilmiş and Suzan Uskudarli. 2018. Organized Behavior Classification of Tweet Sets using Supervised Learning Methods. In WIMS ’18: 8th International Conference on Web Intelligence, Mining and Semantics, June 25–27, 2018, Novi Sad, Serbia. ACM, New York, NY, USA, 9 pages. https://doi.org/10.1145/3227609.3227665<br>
DOI: 10.6084/m9.figshare.6683001
title: Supplementary Material for: German National Guideline for Treating Chronic Respiratory Failure with Invasive and Non-Invasive Ventilation: Revised Edition 2017 – Part 1

description: Today, invasive and non-invasive home mechanical ventilation have become a well-established treatment option. Consequently, in 2010, the German Respiratory Society (<i>Deutsche Gesellschaft für Pneumologie und Beatmungsmedizin</i>, DGP) has leadingly published the Guidelines on “Non-Invasive and Invasive Mechanical Ventilation for Treatment of Chronic Respiratory Failure.” However, continuing technical evolutions, new scientific insights, and health care developments require an extensive revision of the Guidelines. For this reason, the updated Guidelines are now published. Thereby, the existing chapters, namely technical issues, organizational structures in Germany, qualification criteria, disease-specific recommendations including special features in pediatrics as well as ethical aspects and palliative care, have been updated according to the current literature and the health care developments in Germany. New chapters added to the Guidelines include the topics of home mechanical ventilation in paraplegic patients and in those with failure of prolonged weaning. In the current Guidelines, different societies as well as professional and expert associations have been involved when compared to the 2010 Guidelines. Importantly, disease-specific aspects are now covered by the German Interdisciplinary Society of Home Mechanical Ventilation (DIGAB). In addition, societies and associations directly involved in the care of patients receiving home mechanical ventilation have been included in the current process. Importantly, associations responsible for decisions on costs in the health care system and patient organizations have now been involved.