cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48443/rr7n-7d52
title: Single aspirated air temperature (DP1.00002.001)
title: RELEASE-2024

description: Single aspirated air temperature measurements, available as one- and thirty-minute averages of 1 Hz observations. Temperature is one of the most fundamental physical measurements. It is a primary driving factor for countless physical, chemical, and biological processes. The single aspirated sensor assembly comprises an individual Platinum Resistance Thermometer (PRT) housed within an aspirated shield.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Multiple Single Aspirated Air Temperature (SAAT) assemblies are deployed at tower sites. SAAT assemblies are located on each boom arm below the top of the tower. A single SAAT assembly is deployed at aquatic sites and is located on the aquatic met station 3m above ground level. Instrumentation: Thermometrics Climate RTD 100 Ω Probe, housed within a Met One 076B fan aspirated radiation shield
DOI: 10.5281/zenodo.10474320
title: High-resolution Annual Dynamic dataset of Curve Number from 2008 to 2021 over Conterminous United States

description: The spatial distribution and data quality of curve number (CN) values determine the performance of hydrological estimations. However, existing CN datasets are constrained by universal-applicability hypothesis, medium resolution, and imbalance between specificity CN tables to generalized land use/land cover (LULC) maps, which hinder their applicability and predictive accuracy. A new annual CN dataset named CUSCN30, featuring an enhanced resolution of 30 meters and accounting for temporal variations in climate and LULC in the continental United States (CONUS) between 2008 and 2021, was developed in this study. CUSCN30 demonstrated good performance in surface runoff estimation using CN method when compared to observed surface runoff for the selected watersheds. Compared with existing CN datasets, CUSCN30 exhibits the highest accuracy in runoff estimation for both normal and extreme rainfall events. In addition, CUSCN30, with its high spatial resolution, better captures the spatial heterogeneity of watersheds. This developed CN dataset can be used as input for hydrological models or machine learning algorithms to simulate rainfall-runoff across multiple spatiotemporal scales.
DOI: 10.5281/zenodo.11402692
title: Machine Learning Tools for Peptide Bioactivity Evaluation Implications for Cell Culture Media Optimization and the Broader Cultivated Meat Industry
DOI: 10.5281/zenodo.5139528
title: CCG Starter Data Kit: Viet Nam

description: A starter data kit for Viet Nam
DOI: 10.5281/zenodo.6406831
title: Adebiyi etal: absorption of shortwave radiation by North African dust

description: The codes and datasets contained here are for the paper with the information below<br> Titled: "North African dust absorbs substantially less solar radiation than estimated by climate models and remote-sensing retrievals"<br> Author: Adeyemi A. Adebiyi, Yue Huang, Bjørn H. Samset and Jasper F. Kok Please see the ReadMe.txt for additional details. ------------------------<br> Corresponding Authors:<br> Adeyemi Adebiyi<br> Email: aaadebiyi@ucmerced.edu;<br> Department of Life and Environmental Sciences,<br> University of California-Merced,<br> 5200 North Lake Road Merced, CA 95343.
DOI: 10.5281/zenodo.7035828
title: Coral cover and coral bleaching in the Gulf of Chiriqui

description: <strong>Coral cover and coral bleaching in the Gulf of Chiriqui</strong> <strong>Description</strong>: This repository compiles and analyzes coral cover, bleaching and mortality data from 1980-2018. <strong>Content</strong>: <strong>1.Uva_cover.Rmd:</strong> Script for coral cover data analysis <strong>2.Chiriqui_Bleaching.Rmd:</strong> Script for coral bleaching data analysis BleachingData: Directory containing data files in .csv format with the bleaching proportions in the Gulf of Chiriqui CoverData: Directory containing data files in .csv format with the coral cover data in the Gulf of Chiriqui Outputs: Directory containing figure files and multicomparison results. Figure 1b Figure 2 Figure S1 Figure S2 Figure S3 Figure S4
DOI: 10.5281/zenodo.8286402
title: User Study Data for "Proxemic Cursor Interactions for Touchless Widget Control"

description: User study data from the Proxemic Cursor Interactions for Touchless Widget Control paper, published at the SUI 2023 conference.
DOI: 10.5883/bold:aai3202
title: Barcode Index Number BOLD:AAI3202

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.6084/m9.figshare.25546771
title: Data and codes for "Reducing soil nitrogen losses from fertilizer use in global maize and wheat production".

description: Dataset, codes and source data for "Reducing soil nitrogen losses from fertilizer use in global maize and wheat production".<br>
DOI: 10.6084/m9.figshare.26984209
title: Supplementary Material for: Low sun exposure is associated with both progressive-onset and relapse-onset multiple sclerosis risk: a case-control study

description: Background: Sun exposure has consistently been associated with Multiple Sclerosis (MS) onset, but case samples are predominantly relapse-onset MS (ROMS), and risk estimates have rarely been reported separately for ROMS and progressive-onset MS (POMS). We aimed to determine whether sun exposure prior to disease onset was associated with POMS, and whether the effect differed between POMS and ROMS.
Methods: This nationwide case-control study included 153 POMS cases, 204 incident ROMS cases, and 558 community controls with data from two separate datasets: the PPMS Study (2015-2019) and the Ausimmune Study (2003-2006). Information on time spent in the sun before first MS symptom, skin phenotype, sun protection behavior was collected. Satellite data on ambient ultraviolet radiation (UVR) was used to calculate cumulative UVR dose. Unconditional logistic regression was used with adjustment for covariates. 
Results: There were consistent dose-response associations, with higher levels of UVR exposure associated with a reduced risk of POMS, both for leisure-time and occupational UVR from age 6 to symptom onset. Associations were overall stronger for POMS than ROMS. For example, cumulative leisure-time UVR dose (per 100 kJ/m2 increment) was associated with POMS (aOR 0.93, 95% CI 0.91-0.95) and the association was slightly weaker for ROMS (aOR 0.96, 95% CI 0.94-0.99) for age 6 to symptom onset (test for interaction p&lt;0.001).
Conclusions: Low levels of sun exposure, throughout the whole life span, are associated with increased risk of POMS and ROMS onset. The sun effects are usually stronger for POMS than ROMS.
DOI: 10.7799/1052451
title: Oahu Solar Measurement Grid (1-Year Archive): 1-Second Solar Irradiance; Oahu, Hawaii (Data)

description: Seventeen measurement stations in the south western region of the island of Oahu collected data at 1-second intervals over the course of a year.  The sensors are located in a 1-kilometer grid and the information then can be used to predict what PV outputs might be at 1-second intervals for medium-sized and large PV systems.  This DOE-funded study by NREL supports the Hawaii Clean Energy Initiative (HCEI), a multifaceted program to substantially increase the use of renewable energy in Hawaii.
DOI: 10.4225/25/5aab48d653fb1
title: The Australia-Wide Array of Geomagnetic Stations (AWAGS)

description: The Australia-Wide Array of Geomagnetic Stations survey was an array of  58 vector magnetometers  covering mainland Australia, but not Tasmania, and comprised 54 portable three-component magnetometers  plus four permanent magnetic observatories. Time-series of geomagnetic field fluctuations were recorded at 1-minute intervals with 1 nanoTesla sensitivity, together with sensor temperature and time. The portable magnetometers in the array were programmed to commence recording simultaneously on 18 November 1989. Most instruments were kept operating for a nominal interval of 8 months. The last data were recorded on 17 December 1990.

The survey was run jointly by Flinders University of South Australia and Geoscience Australia (previously the Australian Geological Survey Organisation). 

Further details are available: 
Welsh, W. D. and Barton, C. E. (1996), The Australia-Wide Array of Geomagnetic Stations (AWAGS): data corrections. AGSO Record 1996/54, Australian Geological Survey Organisation, Canberra.
DOI: 10.5883/bold:aai3205
title: Barcode Index Number BOLD:AAI3205

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3206
title: Barcode Index Number BOLD:AAI3206

description: A cluster of barcode records associated with a Barcode Index Number(BIN). Each cluster is a proxy for a named or unnamed species. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3209
title: Overview of Barcode Index Number - BOLD:AAI3209

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3214
title: Overview of Barcode Index Number - BOLD:AAI3214

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3215
title: Overview of Barcode Index Number - BOLD:AAI3215

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3221
title: Overview of Barcode Index Number - BOLD:AAI3221

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3222
title: Overview of Barcode Index Number - BOLD:AAI3222

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.5883/bold:aai3223
title: Overview of Barcode Index Number - BOLD:AAI3223

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.17632/scbx3h2bmf.3
title: Lube oil - diesel oil mixes - dataset

description: Data connected with the study of the relationship between the level of lubricating oil contamination with distillation fuel and the risk of explosion in the crankcase 
of a marine trunk type engine. Updated version (initial boiling temperatures included).
DOI: 10.24432/c5z02b
title: GitHub MUSAE
DOI: 10.4121/uuid:70505d03-0a81-4497-ba73-92a3b4563c2a
title: Loading rate effects on the Mode I delamination growth of laminated carbon/epoxy composite DCB specimens

description: This dataset contains data collected from DCB tests performed at Delft University of Technology related to an experimental study to assess the loading rate effects on Mode I delamination growth resistance of composite panels. It is made public both to act as supplementary data for publications and the PhD thesis of Amin Ekhtiyari (at Iran University of Science and Technology) and in order for other researchers to use this data in their own work. The data in this data set was collected in the Structures and Materials Laboratory of Delft University of Technology - Faculty of Aerospace Engineering, between March and July 2018. This research project was made possible by a Scholarship from Iranian Ministry of Science, Research and Technology (MSRT).
DOI: 10.5066/f7q81b3r
title: U.S. Geological Survey - Gap Analysis Project Species Range Maps CONUS_2001

description: GAP species range data are coarse representations of the total areal extent a species occupies, in other words the geographic limits within which a species can be found (Morrison and Hall 2002). These data provide the geographic extent within which the USGS Gap Analysis Project delineates areas of suitable habitat for terrestrial vertebrate species in their species' habitat maps. The range maps are created by attributing a vector file derived from the 12-digit Hydrologic Unit Dataset (USDA NRCS 2009). Modifications to that dataset are described here. Attribution of the season range for each species was based on the literature and online sources (See Cross Reference section of the metadata). Attribution for each hydrologic unit within the range included values for origin (native, introduced, reintroduced, vagrant), occurrence (extant, possibly present, potentially present, extirpated), reproductive use (breeding, non-breeding, both) and season (year-round, summer, winter, migratory, vagrant). These species range data provide the biological context within which to build our species distribution models.  Versioning, Naming Conventions and Codes: A composite version code is employed to allow the user to track the spatial extent, the date of the ground conditions, and the iteration of the data set for that extent/date. For example, CONUS_2001v1 represents the spatial extent of the conterminous US (CONUS), the ground condition year of 2001, and the first iteration (v1) for that extent/date. In many cases, a GAP species code is used in conjunction with the version code to identify specific data sets or files (i.e. Cooper's Hawk Habitat Map named bCOHAx_CONUS_2001v1_HabMap).
DOI: 10.5066/p95htjg8
title: Rasters and Tables for Selection and Survival of Greater Sage-grouse Nests and Broods in the Bi-State Distinct Population Segment of California and Nevada

description: We demonstrate a quantitative approach to differentiate source and sink habitats at large spatial scales using the greater sage-grouse (Centrocercus urophasianus; hereafter, sage-grouse), an indicator species for sagebrush ecosystems, as a case-study. We evaluated both selection and survival across multiple reproductive life stages (nesting, brood-rearing) in the Bi-State Distinct Population Segment (DPS), a genetically distinct and geographically isolated population of sage-grouse on the southwestern edge of the species’ range. Our approach allowed us to identify both mismatches between selection and survival and trade-offs between life stages. These findings suggest competing resource demands across time, with predation risk being a dominant factor for nests and during early brood-rearing when chicks are smaller and flightless, whereas access to forage resources becomes more important during late brood-rearing when resources become increasingly limited. 

These data consist of both continuous indices and categorical rasters representing selection and survival for the nesting and brooding seasons. The selection and survival categories were then intersected again to creat source-sink classes. Seasonal results were also combined to produce composite rasters which represent selection, survival, and source-sinks across the entire reproductive life cycle of sage-grouse.
DOI: 10.5281/zenodo.10009113
title: Hyperspectral Oblique Plane Microscopy -- heart

description: Data and postprocessing codes for the zebrafish embryo heart experiment
DOI: 10.5281/zenodo.11094701
title: Hyperspectral Oblique Plane Microscopy -- microparticles 3D & laser beam profile & hyperspectral image of UV adhesive

description: Processed spectra data for microparticle classification and raw hyperspectral images from mixture of microparticle
DOI: 10.5281/zenodo.12783749
title: ADS-B Interferometry - (22/09/2023)

description: Dataset of ADS-B data from Clee Hill on the 22 September 2023 used in the refractivity retrievals using ADS-B interferometry paper.
DOI: 10.5281/zenodo.13132868
title: Robust estimation of cancer and immune cell-type proportions from bulk tumor ATAC-Seq data.

description: Bulk ATAC-seq data of tumour samples result in an averaged signal across different cell-types (cancer, stromal, vascular and immune cells). We propose a deconvolution framework called EPIC-ATAC (https://doi.org/10.7554/eLife.94833.1), which relies on newly identified cell-type specific ATAC-Seq marker peaks and reference profiles for all major cancer-relevant cell-types to predict the proportions of each cell-type.

To evaluate EPIC-ATAC, we generated a bulk ATAC-Seq dataset from peripheral blood mononuclear cells (PBMCs) samples, from which the number of cells in each cell-type has been estimated using flow cytometry, as ground truth for cell proportions. The data provided in this Zenodo deposit correspond to:

- The raw counts matrix for each peak called in this ATAC-Seq dataset: PBMC_counts.txt

- The normalized (TPM-like) counts matrix for each peak called in this ATAC-Seq dataset: PBMC_counts_norm.txt

- The cell fractions of each cell type in each sample: PBMC_cell_fractions.txt

- The peaks called in each sample using MACS2 (*narrow.peaks): *_normalized.narrowPeak

- Bed files listing ATAC-Seq fragments for each sample: *.bed

We also evaluated EPIC-ATAC on multiple pseudobulks generated from single-cell ATAC-Seq data. We provide rds files containing the pseudobulks data used in our work for the evaluation of EPIC-ATAC. The rds files are located in the zip file "pseudobulks.zip".

The file "additional_data.zip" contains additional files used to generate the reference profiles in EPIC-ATAC and to reproduce the main analyses performed in the manuscript: https://doi.org/10.7554/eLife.94833.1. These files are required to run the code available on the following GitHub repository: GfellerLab/EPIC-ATAC_manuscript.
DOI: 10.5281/zenodo.8380484
title: Hyperspectral Oblique Plane Microscopy -- zebrafish wound

description: Data and postprocessing codes for the zebrafish embryo wound experiment.
DOI: 10.5883/bold:aai3226
title: Overview of Barcode Index Number - BOLD:AAI3226

description: DNA barcode data hosted in the Data Portal of the Barcode of Life Data Systems. Records consist of specimen metadata, specimen images, and sequence data.
DOI: 10.15785/sbgrid/972
title: X-Ray Diffraction data from Human ABCG5/G8 in complex with cholesterol, source of 8CUB structure

description: Native datasets
DOI: 10.15785/sbgrid/976
title: X-Ray Diffraction data from LRP6 bound to YW210.09 Fab and engineered Wnt NC peptide, source of 8FFE structure

description: High resolution dataset used in refinement
DOI: 10.17632/t2cht66xpr.1
title: Fault roughness and laboratory aftershocks

description: Laboratory data sets analyzed in GRL: "Fault roughness promotes earthquake-like aftershock clustering in the lab"
DOI: 10.17633/rd.brunel.25291315.v3
title: Modern Slavery Funding Landscape in the United Kingdom (2013-2024)

description: This database offers insight into the funding landscape surrounding 'Modern Slavery' in the United Kingdom from 2013 to 2024. This database stems from a project examining how funding sources targeting modern slavery have influenced both academic research and civil society interventions.
DOI: 10.24432/c5vp42
title: US Census Data (1990)
DOI: 10.25452/figshare.plus.25546534
title: Chromosome-level haplotype-resolved genome assembly of Pinus densiflora

description: Haplotype-level allelic characterization facilitates research on the functional, evolutionary, and breeding-related features of extremely large and complex plant genomes. We report the 21.7 Gb chromosome-level haplotype-resolved assembly in Pinus densiflora. We found genome rearrangements involving translocations and inversions between chromosome 1 and 3 of Pinus species, and a proliferation of specific long terminal repeat-retrotransposons (LTR-RTs) in P. densiflora. Evolutionary analyses illustrated that tandem and LTR-RT mediated duplications led to a remarkable increment of transcription factors (TFs) in P. densiflora. Comparison of P. densiflora haplotypes A and B uncovered allelic imbalances, including presence absence variations of genes (PAV genes), and their functional contributions to P. densiflora traits. Allele-aware resequencing analysis unveiled the allele and PAV gene diversity across P. densiflora accessions. Our study provides insights into key mechanisms underlying the evolution of genome structure, LTR-RTs and TF genes within Pinus lineage, as well as allelic imbalances and diversity across P. densiflora.
<br>
HaplotypeA - P.densiflora_v1.0_HA
HaplotypeB - P.densiflora_v1.0_HB
Variation_information_of_P.densiflora_accessions.txt.gz : Genotype information generated from resequencing analysis of P. densiflora accessions
DOI: 10.3886/e100918v1
title: Quota Adoption and Reform Over Time (QAROT), 1947-2015

description: Quota Adoption and Reform Over Time, or QAROT, is the first longitudinal dataset with information about the adoption, implementation, and reform of national gender quotas across the world. National gender quotas regulate (s)election to national legislatures through constitutional
provisions or national laws that require some share of general election
candidates or legislators to be women. The dataset includes new measures of quota design, quota
thresholds, placement mandates, sanctions for non-compliance, and quota
effectiveness. We also create a single-variable
measure of the presence of an effective quota to be used by comparative
politics researchers to control for this powerful institutional feature.<br>
DOI: 10.5067/kpumvxfeqla1
title: MERRA-2 tavgU_2d_aer_Nx: 2d,Diurnal,Time-averaged,Single-Level,Assimilation,Aerosol Diagnostics V5.12.4
DOI: 10.5281/zenodo.10045008
title: Hyperspectral Oblique Plane Microscopy -- CAD model and PSF

description: CAD model (without Raman laser) and PSF data
DOI: 10.5281/zenodo.10048320
title: The Helicobacter pylori Genome Project (HpGP) Phase1 dataset and 255 H. pylori population reference dataset

description: This repository holds the HpGP Phase 1 genomic dataset for Hp26695 and 1011 study samples. All 1012 genomic sequences were annotated using the NCBI Prokaryotic Genome Annotation Pipeline(PGAP). Also, it has 255 curated public available H. pylori genomic sequences used for population structure analysis in Thorell et al. Nature Communications, 14:8184 (2023).

You can check the NCBI BioProject website for the latest annotation and sequence updates.

https://www.ncbi.nlm.nih.gov/bioproject/?term=HpGP

Please cite the above-mentioned paper if you use the data.
DOI: 10.5281/zenodo.10245261
title: Analysis and visualization of the Fasciola hepatica spatial transcriptomics dataset

description: This repository contains various files related to the analysis of the paper: Spatial transcriptomics of a parasitic flatworm provides a molecular map of drug targets and drug-resistance genes.