cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4785517.v1
title: Effect of gross morphology on modern planktonic foraminiferal test strength under compression

description: Raw data for all crushing experiments, wall thickness measurements, and results for all pair-wise Kolmogorov-Smirnov Tests
DOI: 10.6084/m9.figshare.4785499
title: Thermometers

description: Illustrations of thermometers<br>
DOI: 10.6084/m9.figshare.4785487
title: Senescence-accelerated mouse prone 8 (SAMP8) as a model of age-related hearing loss

description: SAMP8 and CBA weight, ABR threshold and DPOAE amplitude during senescence process
DOI: 10.6084/m9.figshare.4785490
title: Plans: magnet-assisted bryophyte cross sectioning tool

description: <i>Content of the plans:</i>PDF and CAD plans for the magnetic support plate set up for standard 76 x 26 mm microscope slides. For slides with other dimensions, modifications are needed as specified in the PDF plan<i>.</i>
DOI: 10.6084/m9.figshare.4785505.v2
title: Arabidopsis plants

description: Illustrations of Arabidopsis thaliana plants at different developmental stages<br>
DOI: 10.6084/m9.figshare.4785499.v2
title: Thermometers

description: Illustrations of thermometers<br>
DOI: 10.6084/m9.figshare.4785487.v1
title: Senescence-accelerated mouse prone 8 (SAMP8) as a model of age-related hearing loss

description: SAMP8 and CBA weight, ABR threshold and DPOAE amplitude during senescence process
DOI: 10.6084/m9.figshare.4785490.v1
title: Plans: magnet-assisted bryophyte cross sectioning tool

description: <i>Content of the plans:</i>PDF and CAD plans for the magnetic support plate set up for standard 76 x 26 mm microscope slides. For slides with other dimensions, modifications are needed as specified in the PDF plan<i>.</i>
DOI: 10.6084/m9.figshare.4785481
title: weight.xlsx

description: SAMP8 and CBA weight evolution
DOI: 10.6084/m9.figshare.4785463
title: Supplementary Material for: Environmental Enrichment Rescues Postnatal Neurogenesis Defect in the Male and Female Ts65Dn Mouse Model of Down Syndrome

description: Down syndrome (DS), the most frequent genetic cause of intellectual disability and developmental delay, results from impaired neural stem cell proliferation and differentiation. Impaired neurogenesis in the neocortex, hippocampus and cerebellum is believed to be the underlying cause of learning and behavioral deficits in the Ts65Dn mouse model of DS. Aggressive sensorimotor and cognitive therapies have shown promise in mitigating the cognitive disabilities in DS but these behavioral therapies have not yet been investigated at the cellular level. Here, using the Ts65Dn mouse model of DS, we demonstrate that a combination of environmental enrichment and physical exercise starting in juvenile mice (postnatal day 18) markedly increases cell proliferation, neurogenesis and gliogenesis in the hippocampal dentate gyrus (DG) and the forebrain subventricular zone (SVZ) of both male and female mice. Enrichment and exercise increased the rate of Ts65Dn DG neurogenesis to be comparable to that of the nonenriched euploid group, while the effect on SVZ neurogenesis was reduced and seen only after prolonged exposure. These results clearly indicate that in a comprehensive stimulatory environment, the postnatal DS brain has the intrinsic capability of improving neurogenesis and gliogenesis to the levels of normal matched controls and that this cellular response underlies the cognitive improvement seen following behavioral therapies.
DOI: 10.6084/m9.figshare.4785460
title: Supplementary Material for: Aggregates of cAMP-Dependent Kinase Isoforms Characterize Different Areas in the Developing Central Nervous System of the Chicken, Gallus gallus

description: The intracellular second messenger adenosine 3′,5′-cyclic monophosphate (cAMP) acts mainly through cAMP-dependent protein kinases (PKA). In mammals and reptiles, the PKA regulatory isoforms (RI and RII) are differentially distributed among the various brain areas and cell types, according to the age of the animal. Since PKA distribution may be an additional marker for homologous areas, PKA regulatory subunit types RI and RII were examined in the chicken brain, a species not yet investigated. Chicken brains were examined from prehatching to adult age, by means of immunohistochemistry and biochemical characterization. Most PKA regulatory subunits were segregated in discrete non-soluble clusters that contained either RI or RII. While RII aggregates were present also in non-neuronal cells, RI aggregates were detected only in neurons of some brain areas that are mainly related to the telencephalon. They appeared later than RII aggregates; their presence and location varied during development. RI aggregates were detected first in the olfactory bulb, around embryonic day 14; within 3 days they appeared in the hyperpallium and nidopallium, where the most intense labeling was observed in the perihatching period. Fainter RI aggregates persisted up to 3 years in the olfactory bulb and nidopallium caudale. Less intense RI aggregates were present for a shorter time, from 2 weeks to 3 months, in the septal nuclei, thalamic medial nuclei, periventricular hypothalamus, optic tectum periventricular area, brainstem reticular formation and spinal cord substantia gelatinosa. RI aggregates were not detected in many brain areas including the arcopallium, striatum and cranial nerve nuclei. RII distribution showed less variation during development. From embryonic day 12, some insoluble RII aggregates were detected in the brain; however, only minor modifications were observed in positive structures once they started to harbor insoluble RII aggregates. The present results suggest that the distribution of PKA aggregates may assist in characterizing phylogenetically homologous structures of the vertebrate central nervous system and may also unravel biochemical differences among areas considered homologous.
DOI: 10.6084/m9.figshare.4785463.v1
title: Supplementary Material for: Environmental Enrichment Rescues Postnatal Neurogenesis Defect in the Male and Female Ts65Dn Mouse Model of Down Syndrome

description: Down syndrome (DS), the most frequent genetic cause of intellectual disability and developmental delay, results from impaired neural stem cell proliferation and differentiation. Impaired neurogenesis in the neocortex, hippocampus and cerebellum is believed to be the underlying cause of learning and behavioral deficits in the Ts65Dn mouse model of DS. Aggressive sensorimotor and cognitive therapies have shown promise in mitigating the cognitive disabilities in DS but these behavioral therapies have not yet been investigated at the cellular level. Here, using the Ts65Dn mouse model of DS, we demonstrate that a combination of environmental enrichment and physical exercise starting in juvenile mice (postnatal day 18) markedly increases cell proliferation, neurogenesis and gliogenesis in the hippocampal dentate gyrus (DG) and the forebrain subventricular zone (SVZ) of both male and female mice. Enrichment and exercise increased the rate of Ts65Dn DG neurogenesis to be comparable to that of the nonenriched euploid group, while the effect on SVZ neurogenesis was reduced and seen only after prolonged exposure. These results clearly indicate that in a comprehensive stimulatory environment, the postnatal DS brain has the intrinsic capability of improving neurogenesis and gliogenesis to the levels of normal matched controls and that this cellular response underlies the cognitive improvement seen following behavioral therapies.
DOI: 10.6084/m9.figshare.4785460.v1
title: Supplementary Material for: Aggregates of cAMP-Dependent Kinase Isoforms Characterize Different Areas in the Developing Central Nervous System of the Chicken, Gallus gallus

description: The intracellular second messenger adenosine 3′,5′-cyclic monophosphate (cAMP) acts mainly through cAMP-dependent protein kinases (PKA). In mammals and reptiles, the PKA regulatory isoforms (RI and RII) are differentially distributed among the various brain areas and cell types, according to the age of the animal. Since PKA distribution may be an additional marker for homologous areas, PKA regulatory subunit types RI and RII were examined in the chicken brain, a species not yet investigated. Chicken brains were examined from prehatching to adult age, by means of immunohistochemistry and biochemical characterization. Most PKA regulatory subunits were segregated in discrete non-soluble clusters that contained either RI or RII. While RII aggregates were present also in non-neuronal cells, RI aggregates were detected only in neurons of some brain areas that are mainly related to the telencephalon. They appeared later than RII aggregates; their presence and location varied during development. RI aggregates were detected first in the olfactory bulb, around embryonic day 14; within 3 days they appeared in the hyperpallium and nidopallium, where the most intense labeling was observed in the perihatching period. Fainter RI aggregates persisted up to 3 years in the olfactory bulb and nidopallium caudale. Less intense RI aggregates were present for a shorter time, from 2 weeks to 3 months, in the septal nuclei, thalamic medial nuclei, periventricular hypothalamus, optic tectum periventricular area, brainstem reticular formation and spinal cord substantia gelatinosa. RI aggregates were not detected in many brain areas including the arcopallium, striatum and cranial nerve nuclei. RII distribution showed less variation during development. From embryonic day 12, some insoluble RII aggregates were detected in the brain; however, only minor modifications were observed in positive structures once they started to harbor insoluble RII aggregates. The present results suggest that the distribution of PKA aggregates may assist in characterizing phylogenetically homologous structures of the vertebrate central nervous system and may also unravel biochemical differences among areas considered homologous.
DOI: 10.23708/wvcg5o
title: Aquaporins in Pearl Millet: genomic, coding and protein sequences

description: Pearl millet (Pennisetum glaucum (L) R. Br.) is a key cereal for food security in arid and semi-arid regions but its yield is increasingly threatened by water stress. Physiological mechanisms consisting in saving water or increasing water use efficiency can alleviate that stress. Aquaporins (AQP) are water channels contributing to plant hydraulic balance that are supposedly involved in these mechanisms by mediating root water transport. However, AQP remain largely uncharacterized in pearl millet. We developed genomic approaches to identify the entire AQP family in pearl millet. We identified and annotated 33 AQP genes in pearl millet among which ten encoded Plasma Membrane Intrinsic Proteins (PIP). The genomic, coding and protein sequences of the identified AQP are available in this dataset. Furthermore, Phyre2 web-based service was used to performed modeling prediction of the pearl millet PIP based on homologies with aquaporin with known structure. This analysis generated Protein Data Bank (PDB) files for each PIP that are also available in this dataset.
DOI: 10.6084/m9.figshare.4784752
title: The Impact of SWAps on Health Aid Displacement of Domestic Health Expenditure

description: Recent research suggests that an additional $1 of health aid would displace – or crowd out – nearly the same amount in a recipient government’s own health expenditure. Implementing a Sector Wide Approach (SWAp) may exacerbate crowding out because recipient governments should face fewer constraints when allocating health aid. This paper uses rigorous panel data methods to investigate this hypothesised effect of SWAps. We find that SWAps provide not an exacerbating but a potentially protective effect, reducing displacement of government health expenditure. This suggests some aid dollars are more fungible than others, and the mechanism for aid delivery makes a difference.
DOI: 10.6084/m9.figshare.4784752.v1
title: The Impact of SWAps on Health Aid Displacement of Domestic Health Expenditure

description: Recent research suggests that an additional $1 of health aid would displace – or crowd out – nearly the same amount in a recipient government’s own health expenditure. Implementing a Sector Wide Approach (SWAp) may exacerbate crowding out because recipient governments should face fewer constraints when allocating health aid. This paper uses rigorous panel data methods to investigate this hypothesised effect of SWAps. We find that SWAps provide not an exacerbating but a potentially protective effect, reducing displacement of government health expenditure. This suggests some aid dollars are more fungible than others, and the mechanism for aid delivery makes a difference.
DOI: 10.6084/m9.figshare.4784569
title: Choosing face infographic

description: Infographic to accompany press release for following publication.<br>White, D., Sutherland, C.A.M, Burton, A.L. (2017). Choosing face: The curse of self in profile image selection. Cognitive Research: Principles and Implications. doi: 0.1186/s41235-017-0058-3<br>
DOI: 10.6084/m9.figshare.4784572
title: Measurements for 8-pixel SPAD arrays afterpulsing estimation

description: The files included in this repository correspond to acquisitions performed with two 8-pixel POLIMI SPAD arrays part of the 8-spot smFRET setup, exposed to different constant illuminations.These files were used to compute the average afterpulsing probability of each SPAD.<br>Ill_2.hdf5, Ill_3.hdf5, Ill_4.hdf5: DONOR SPAD array counts an increasing illumination. ACCEPTOR SPAD arrays is disconnected.<br>Ill_16ch__3.hdf5, Ill_16ch__4.hdf5, Ill_16ch__5.hdf5 ACCEPTOR SPAD array counts an increasing illumination. The files also contains dark count recording of the other SPAD array (DONOR).<br><br>(C) 2014, The Regents of the University of California
DOI: 10.6084/m9.figshare.4784560
title: Heseltine_etal_MapData.zip

description: PLOS ONE Journal <br>Manuscript title:Mapping the risk of exposure to Heterobilharzia americana in dogs in Texas, USA<br>Authors:J.C. Heseltine, B.Y. Amichev, J.M. Steiner<br>Year: 2017<br>Manuscript Data Description:Polygon shapefiles, for use with the ArcGIS software (TM), showing the risk of exposure area to Heterobilharzia Americana in 11 counties in the state of Texas, USA.<br>The polygon data are from the The soil survey geographic (SSURGO) database which contains information about soil, such as soil description and soil properties, collected by the National Cooperative Soil Survey over the past several decades.<br>SSURGO database citation:Soil Survey staff (USDA-NRCS). Soil Survey Geographic (SSURGO) database. Soils data download site from United Stated Department of Agriculture - Natural Resources Conservation Service [Available online] https://websoilsurvey.nrcs.usda.gov/app/WebSoilSurvey.aspx, verified on 6 Jan 2017. 2003.
DOI: 10.6084/m9.figshare.4784530
title: HomeRange.gdb.zip

description: An ESRI file geodatabase of home ranges (25,50,75,90,95% ranges) for each geolocator for each month.<br>
DOI: 10.6084/m9.figshare.4784560.v1
title: Heseltine_etal_MapData.zip

description: PLOS ONE Journal <br>Manuscript title:Mapping the risk of exposure to Heterobilharzia americana in dogs in Texas, USA<br>Authors:J.C. Heseltine, B.Y. Amichev, J.M. Steiner<br>Year: 2017<br>Manuscript Data Description:Polygon shapefiles, for use with the ArcGIS software (TM), showing the risk of exposure area to Heterobilharzia Americana in 11 counties in the state of Texas, USA.<br>The polygon data are from the The soil survey geographic (SSURGO) database which contains information about soil, such as soil description and soil properties, collected by the National Cooperative Soil Survey over the past several decades.<br>SSURGO database citation:Soil Survey staff (USDA-NRCS). Soil Survey Geographic (SSURGO) database. Soils data download site from United Stated Department of Agriculture - Natural Resources Conservation Service [Available online] https://websoilsurvey.nrcs.usda.gov/app/WebSoilSurvey.aspx, verified on 6 Jan 2017. 2003.
DOI: 10.6084/m9.figshare.4784470
title: PONE-D-16-45371_Data_Fig5D

description: Quantification of the normalized tubulin fluorescence intensity (in a.u.) in cold-treated spindles upon control, Kif15, KBP or Ki67-silencing.
DOI: 10.6084/m9.figshare.4784467
title: PONE-D-16-45371_Data_Fig5C

description: Quantification of K-fiber lengths in control, KBP, Kif15 or Ki67-silenced cells as measured in the immunofluorescence images. Length is measured in micrometer.
DOI: 10.6084/m9.figshare.4784461
title: PONE-D-16-45371_Data_Fig5A

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Lucida Grande'} Quantification of the proportion of cells with chromosomes aligned upon Nuf2 silencing or Nuf2 and Kif15, KBP or Ki67 co-silencing. Cells were divided in three different categories of chromosome alignment, i.e. siNuf2 spindles with all chromosomes aligned (fully aligned), with most of the chromosomes aligned (mostly aligned) or with scattered chromosomes (severely misaligned). Values represent the number of cells observed. p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Lucida Grande'}
DOI: 10.6084/m9.figshare.4784467.v1
title: PONE-D-16-45371_Data_Fig5C

description: Quantification of K-fiber lengths in control, KBP, Kif15 or Ki67-silenced cells as measured in the immunofluorescence images. Length is measured in micrometer.
DOI: 10.6084/m9.figshare.4784470.v1
title: PONE-D-16-45371_Data_Fig5D

description: Quantification of the normalized tubulin fluorescence intensity (in a.u.) in cold-treated spindles upon control, Kif15, KBP or Ki67-silencing.
DOI: 10.6084/m9.figshare.4784530.v1
title: HomeRange.gdb.zip

description: An ESRI file geodatabase of home ranges (25,50,75,90,95% ranges) for each geolocator for each month.<br>
DOI: 10.6084/m9.figshare.4784461.v1
title: PONE-D-16-45371_Data_Fig5A

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Lucida Grande'} Quantification of the proportion of cells with chromosomes aligned upon Nuf2 silencing or Nuf2 and Kif15, KBP or Ki67 co-silencing. Cells were divided in three different categories of chromosome alignment, i.e. siNuf2 spindles with all chromosomes aligned (fully aligned), with most of the chromosomes aligned (mostly aligned) or with scattered chromosomes (severely misaligned). Values represent the number of cells observed. p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px 'Lucida Grande'}
DOI: 10.6084/m9.figshare.4784569.v3
title: Choosing face infographic

description: Infographic to accompany press release for following publication.<br>White, D., Sutherland, C.A.M, Burton, A.L. (2017). Choosing face: The curse of self in profile image selection. Cognitive Research: Principles and Implications. doi: 0.1186/s41235-017-0058-3<br><br>As a condition of use, the figure must be attributed to Rita White.<br><br>
DOI: 10.6084/m9.figshare.4784437
title: PONE-D-16-45371_Data_Fig4C

description: Quantification of chromosome alignment in control, KBP, Kif15 or Ki67-silenced cells. Cells with bipolar spindles were categorized based upon the degree of chromosome alignment, i.e. fully aligned chromosomes (metaphase cells), misaligned chromosomes (most chromosomes have congressed to the metaphase plate, few chromosomes are not aligned yet). Values in the table represent the number of bipolar cells observed.
DOI: 10.6084/m9.figshare.4784569.v2
title: Choosing face infographic

description: Infographic to accompany press release for following publication:<br>White, D., Sutherland, C.A.M, Burton, A.L. (2017). Choosing face: The curse of self in profile image selection. Cognitive Research: Principles and Implications. doi: 0.1186/s41235-017-0058-3<br>
DOI: 10.6084/m9.figshare.4784437.v1
title: PONE-D-16-45371_Data_Fig4C

description: Quantification of chromosome alignment in control, KBP, Kif15 or Ki67-silenced cells. Cells with bipolar spindles were categorized based upon the degree of chromosome alignment, i.e. fully aligned chromosomes (metaphase cells), misaligned chromosomes (most chromosomes have congressed to the metaphase plate, few chromosomes are not aligned yet). Values in the table represent the number of bipolar cells observed.
DOI: 10.6084/m9.figshare.4781833
title: Creating Template Kernels for Snapping Shrimp Detection Algorithm

description: This code was adapted from MATLAB code written by Dr. Bohnenstiehl at the Center for Marine Science and Technology at NCSU. Its purpose is to build a template kernel for use in the snapping shrimp detection algorithm. The audio file utilized in this code is included in the download (48 kHz/16 bit).<br><br>If you are making use of this code for your own purposes, you will need to determine your own kernel, as its shape will likely change under different recording parameters.<br><br>Check back soon for the full algorithm code. <br>
DOI: 10.6084/m9.figshare.4781248
title: PONE-D-16-45371_Data_Fig2E

description: Quantification of Kif15 intensity along the spindle axis.
DOI: 10.6084/m9.figshare.4781263
title: PONE-D-16-45371_Data_Fig4B

description: Quantification of prometaphase duration as observed in the live-cell imaging in control (siCtrl), Ki67-silenced cells. Prometaphase was defined as the time needed for cells to progress from NEBD till anaphase onset. Time in min.
DOI: 10.6084/m9.figshare.4781833.v1
title: Building Template Kernels for Snapping Shrimp Detection Algorithm

description: This code was adapted from MATLAB code written by Dr. Bohnenstiehl at the Center for Marine Science and Technology at NCSU. Its purpose is to build a template kernel for use in the snapping shrimp detection algorithm. The audio file utilized in this code is available on my figshare profile. <br><br>Check back soon for the full code. <br>
DOI: 10.6084/m9.figshare.4781245
title: data getting from movement

description: force movement
DOI: 10.6084/m9.figshare.4781263.v1
title: PONE-D-16-45371_Data_Fig4B

description: Quantification of prometaphase duration as observed in the live-cell imaging in control (siCtrl), Ki67-silenced cells. Prometaphase was defined as the time needed for cells to progress from NEBD till anaphase onset. Time in min.
DOI: 10.6084/m9.figshare.4781245.v1
title: data getting from movement

description: force movement
DOI: 10.6084/m9.figshare.4781248.v1
title: PONE-D-16-45371_Data_Fig2E

description: Quantification of Kif15 intensity along the spindle axis.
DOI: 10.6084/m9.figshare.4781833.v3
title: Creating Template Kernels for Snapping Shrimp Detection Algorithm

description: This code was adapted from MATLAB code written by Dr. Bohnenstiehl at the Center for Marine Science and Technology at NCSU. Its purpose is to build a template kernel for use in the snapping shrimp detection algorithm. The audio file utilized in this code is included in the download (48 kHz/16 bit).<br><br>If you are making use of this code for your own purposes, you will need to determine your own kernel, as its shape will likely change under different recording parameters.<br><br>Check back soon for the full algorithm code. <br>
DOI: 10.6084/m9.figshare.4781224
title: Clostridium difficile Manuka honey biofilm formation Results.xlsx

description: Raw data
DOI: 10.6084/m9.figshare.4781833.v2
title: Building Template Kernels for Snapping Shrimp Detection Algorithm

description: This code was adapted from MATLAB code written by Dr. Bohnenstiehl at the Center for Marine Science and Technology at NCSU. Its purpose is to build a template kernel for use in the snapping shrimp detection algorithm. The audio file utilized in this code is included in the download (48 kHz/16 bit).<br><br>If you are making use of this code for your own purposes, you will need to determine your own kernel, as its shape will likely change under different recording parameters.<br><br>Check back soon for the full algorithm code. <br>
DOI: 10.6084/m9.figshare.4781200
title: PONE-D-16-45371_Data_Fig3B

description: Quantification of prometaphase duration as observed in the live-cell imaging in control (siCtrl), KBP-, Kif15- or KBP/Kif15-silenced cells. Prometaphase was defined as the time needed for cells to progress from NEBD till anaphase onset. Time in min.