cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5665237
title: Additional file 3: Text S3. of Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)

description: All data matrices used in the phylogenetic analyses presented here. (NEX 11855 kb)
DOI: 10.6084/m9.figshare.5665237.v1
title: Additional file 3: Text S3. of Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)

description: All data matrices used in the phylogenetic analyses presented here. (NEX 11855 kb)
DOI: 10.6084/m9.figshare.5665234
title: Additional file 1: Table S1. of H558R, a common SCN5A polymorphism, modifies the clinical phenotype of Brugada syndrome by modulating DNA methylation of SCN5A promoters

description: SCN5A primer list. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5665234.v1
title: Additional file 1: Table S1. of H558R, a common SCN5A polymorphism, modifies the clinical phenotype of Brugada syndrome by modulating DNA methylation of SCN5A promoters

description: SCN5A primer list. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5665222
title: MOESM1 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 1. GeneSet_Nd1_v1.1. Gene prediction of the Nd-1 genome sequence containing genes with non-canonical splice sites.
DOI: 10.6084/m9.figshare.5665222.v1
title: MOESM1 of Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence

description: Additional file 1. GeneSet_Nd1_v1.1. Gene prediction of the Nd-1 genome sequence containing genes with non-canonical splice sites.
DOI: 10.6084/m9.figshare.5665213
title: Additional file 1: Table S1. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: Information of RNA-seq. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5665213.v1
title: Additional file 1: Table S1. of Global gene expression reveals stress-responsive genes in Aspergillus fumigatus mycelia

description: Information of RNA-seq. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.5665207
title: Additional file 1: Table S1. of Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)

description: Table of taxa, indicating whether or not they have been scored for morphological characters, percentage completeness (if scored for morphological characters) and Genbank accession numbers for molecular sequences. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5665207.v1
title: Additional file 1: Table S1. of Total evidence phylogeny and evolutionary timescale for Australian faunivorous marsupials (Dasyuromorphia)

description: Table of taxa, indicating whether or not they have been scored for morphological characters, percentage completeness (if scored for morphological characters) and Genbank accession numbers for molecular sequences. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.5665192
title: Additional file 2: of Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress

description: Annotated regulated genes inferred from the RNAseq data. Description of the data: Genes identified as significantly regulated in PEG treated plants relative to control plants and genes identified as significantly regulated in Salt treated plants relative to control plants. For each gene (rows) normalized read counts and the resulting statistical analysis in EdgeR is presented. Also BLAST2GO annotations are given. (XLSX 4617 kb)
DOI: 10.6084/m9.figshare.5665192.v1
title: Additional file 2: of Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress

description: Annotated regulated genes inferred from the RNAseq data. Description of the data: Genes identified as significantly regulated in PEG treated plants relative to control plants and genes identified as significantly regulated in Salt treated plants relative to control plants. For each gene (rows) normalized read counts and the resulting statistical analysis in EdgeR is presented. Also BLAST2GO annotations are given. (XLSX 4617 kb)
DOI: 10.6084/m9.figshare.5665063.v1
title: A new geodemographic classification of commuting flows for England and Wales

description: This paper aims to contribute to the area of geodemographic research through the development of a new and novel flow-based classification of commuting for England and Wales. In doing so, it applies an approach to the analysis of commuting in which origin-destination flow-data, collected as part of the 2011 census of England and Wales, are segmented into groups based on shared similarities across multiple demographic and socioeconomic attributes. <i>k</i>-Means clustering was applied to 49 flow-based commuter variables for 513,892 interactions that captured 18.4 million of the 26.5 million workers recorded as part of the 2011 census of England and Wales. The final classification resulted in an upper-tier of nine ‘Supergroups’ which were subsequently partitioned to derive a lower-tier of 40 ‘Groups’. A nomenclature was developed and associated pen portraits derived to provide basic signposting to the dominant characteristics of each cluster. Analysis of a selection of patterns underlying the ninefold Supergroup configuration revealed a highly variegated structure of commuting in England and Wales. The classification has potentially wide-ranging descriptive and analytical applications within research and policy domains and the approach would be equally transferable to other countries and contexts where origin-destination data are disaggregated based on commuter characteristics.
DOI: 10.6084/m9.figshare.5664880
title: Garlic Mustard Seed Size

description: The length and width measurements of 50 garlic mustard seeds.
DOI: 10.6084/m9.figshare.5664880.v1
title: Garlic Mustard Seed Size

description: The length and width measurements of 50 garlic mustard seeds.
DOI: 10.15129/9001fb65-2b0f-4415-b8cb-89049665a1fc
title: Data for STFC project: "DC power supply to drive W-band gyrotron travelling wave amplifier for satellite uplink and wireless telecommunication applications"

description: The data contains the specifications of the power supply that the vendor designed for the application.
DOI: 10.6084/m9.figshare.5664790
title: Dataset for: Preference for conspecifics evolves earlier in males than females in a sexually dimorphic radiation of fishes

description: Speciation by sexual selection is generally modeled as the co-evolution of female preferences and elaborate male ornaments leading to behavioral (sexual) reproductive isolation. One prediction of these models is that female preference for conspecific males should evolve earlier than male preference for conspecific females in sexually dimorphic species with male ornaments. We tested that prediction in darters, a diverse group of freshwater fishes with sexually dimorphic ornamentation. Focusing on the earliest stages of divergence, we tested preference for conspecific mates in males and females of seven closely related species pairs. Contrary to expectation, male preference for conspecific females was significantly greater than female preference for conspecific males. Males in four of the fourteen species significantly preferred conspecific females; whereas, females in no species significantly preferred conspecific males. Relationships between the strength of preference for conspecifics and genetic distance revealed no difference in slope between males and females but a significant difference in intercept, also suggesting that male preference evolves earlier than females’. Our results are consistent with other recent studies in darters and suggest that the co-evolution of female preferences and male ornaments may not best explain the earliest stages of behavioral isolation in this lineage.
DOI: 10.6084/m9.figshare.5664790.v1
title: Dataset for: Preference for conspecifics evolves earlier in males than females in a sexually dimorphic radiation of fishes

description: Speciation by sexual selection is generally modeled as the co-evolution of female preferences and elaborate male ornaments leading to behavioral (sexual) reproductive isolation. One prediction of these models is that female preference for conspecific males should evolve earlier than male preference for conspecific females in sexually dimorphic species with male ornaments. We tested that prediction in darters, a diverse group of freshwater fishes with sexually dimorphic ornamentation. Focusing on the earliest stages of divergence, we tested preference for conspecific mates in males and females of seven closely related species pairs. Contrary to expectation, male preference for conspecific females was significantly greater than female preference for conspecific males. Males in four of the fourteen species significantly preferred conspecific females; whereas, females in no species significantly preferred conspecific males. Relationships between the strength of preference for conspecifics and genetic distance revealed no difference in slope between males and females but a significant difference in intercept, also suggesting that male preference evolves earlier than females’. Our results are consistent with other recent studies in darters and suggest that the co-evolution of female preferences and male ornaments may not best explain the earliest stages of behavioral isolation in this lineage.
DOI: 10.6084/m9.figshare.5664685
title: [Selection, performance goal complex, exploitation orientation] Questionnaires, de-identified raw data, and Stata / SPSS syntax files

description: Questionnaires, de-identified raw data, and Stata / SPSS syntax files for the manuscript:<br>Sommet, N., Nguyen, D., Fahrni, K., Jobin, M., Nguyen, H.-P., Sehaqui, H., & Butera, F. (2018). When and Why Performance Goals Predict Exploitation Behaviors: An Achievement Goal Complex Analysis of the Selection Function of Assessment. Accepted for publication in Motivation and Emotion.<br>
DOI: 10.17608/k6.auckland.5664661
title: INFORMAS Protocol: Food Promotion Module - TV Advertising: Annex 2 (TV Coding Tool)

description: Data Coding Sheets
DOI: 10.6084/m9.figshare.5664532
title: SigSeekr Example Data

description: Example dataset for running SigSeekr.<br>
DOI: 10.6084/m9.figshare.5664532.v2
title: SigSeekr Example Data

description: Example dataset for running SigSeekr.<br>
DOI: 10.6084/m9.figshare.5664532.v1
title: SigSeekr Example Data

description: Example dataset for running SigSeekr.<br>
DOI: 10.6084/m9.figshare.5664463
title: CARNAVALIZATION OF THE LAW AS A POSSIBLE KEY OF ONE THE GATEWAYS OF THE GREEN HOUSE

description: Literature, like a glass, enables one to see reality from another perspective. The present article will analyze the legal context from the short story "The Alienist", by the Brazilian writer Machado de Assis, first published in 1882. It is intended to problematize the way of producing law, denouncing Common Sense Theoretician of the Jurists and the enclosure of the Right by the dominant paradigm, using the metaphors of that literary work. Obviously, following in the footsteps of Luiz Alberto Warat and in his inspiration in Bakhtinian thought point to the Carnavalization of law as a possible alternative. The method used was the dialectic, placing two distinct universes, literature and law side by side, in order to promote dialogue between these worlds. Thus, the work was structured in two chapters, the first one aimed at a properly literary understanding and the second making the convergence of Machadian literature to law.
DOI: 10.6084/m9.figshare.5663533
title: América Latina frente al desafío de compartir el conocimiento

description: <i>Conferencia presentada (via remota) por Carolina Botero el día 13 de octubre de 2017 en OpenCon LatAm.</i>
DOI: 10.6084/m9.figshare.5663533.v2
title: América Latina frente al desafío de compartir el conocimiento

description: <i>Conferencia presentada (via remota) por Carolina Botero el día 13 de octubre de 2017 en OpenCon LatAm.</i>
DOI: 10.6084/m9.figshare.5663515
title: Sites of Epigenetic Supersimilarity (ESS) associate with Cancer Risk

description: <b>Overview</b><b><br></b>Monozygotic twins have long been studied to estimate heritability and explore epigenetic influences on phenotypic variation. The phenotypic and epigenetic similarity of monozygotic twins have been assumed to be largely due to their genetic identity. By analyzing data from a genome-scale study of DNA methylation in monozygotic and dizygotic twins, we identified genomic regions at which the epigenetic similarity of monozygotic twins is substantially greater than can be explained by their genetic identity, exhibiting ‘epigenetic supersimilarity’ (ESS). We were able to show that ESS probes associate with risk of cancer using the prospective cohort compiled by the Melbourne Collaborative Cohort Study (MCCS) using DNA methylation in whole blood.<br><b>Dataset</b><br>We evaluated the association between 1576 ESS CpG probes and 2247 negative control CpG probes versus risk of developing several types of cancer by mining case-control studies nested in the MCCS cohort. Specifically, we evaluated 433 case-control pairs for Breast Cancer (BC), 834 case-control pairs for Colorectal Cancer (CRC), 141 case-control pairs for Kidney Cancer (Kidney), 331 case-control pairs for Lung Cancer (Lung), 435 case-control pairs for Mature B-cell Neoplasm (MBCN), 863 case-control pairs for Prostate Cancer (PC), and 426 case-control pairs for Urothelial Cell Carcinoma (UCC). For reproducibility and further analysis by the community, we make the data available as normalized M-values.<br><b>Sample processing info</b>The methylation data were background corrected and normalized based on internal control probes using the manufacturer’s background correction, using the R library minfi. We also applied subset-quantile within-array normalization (SWAN) to correct for technical discrepancies between type I and type II probes on the assay. A β-value (interpreted as percentage methylation) was calculated for each CpG site using minfi. Methylation measures with a detection p-value higher than 0.01 were considered missing. Samples with more than 5% missing values were excluded; then, CpGs that were missing for more than 20% of samples were excluded. β-values were transformed into M-values for analysis: M=log2(β/(1-β)).<br><br><b>Publication</b><br>Timothy E. Van Baak, Cristian Coarfa, Pierre-Antoine Dugué, Giovanni Fiorito, Eleonora Laritsky, Maria S. Baker, Noah J. Kessler, Jianrong Dong, Jack D. Duryea, Matt J. Silver, Ayden Saffari, Andrew M. Prentice, Sophie E. Moore, Akram Ghantous, Michael N. Routledge, Yun Yun Gong, Zdenko Herceg, Paolo Vineis, Gianluca Severi, John L. Hopper, Melissa C. Southey, Graham G. Giles, Roger L. Milne, Robert A. Waterland. Epigenetic supersimilarity of monozygotic twin pairs. <b>Genome Biology,</b><br>
DOI: 10.6084/m9.figshare.5663515.v1
title: Sites of Epigenetic Supersimilarity (ESS) associate with Cancer Risk

description: <b>Overview</b><b><br></b>Monozygotic twins have long been studied to estimate heritability and explore epigenetic influences on phenotypic variation. The phenotypic and epigenetic similarity of monozygotic twins have been assumed to be largely due to their genetic identity. By analyzing data from a genome-scale study of DNA methylation in monozygotic and dizygotic twins, we identified genomic regions at which the epigenetic similarity of monozygotic twins is substantially greater than can be explained by their genetic identity, exhibiting ‘epigenetic supersimilarity’ (ESS). We were able to show that ESS probes associate with risk of cancer using the prospective cohort compiled by the Melbourne Collaborative Cohort Study (MCCS) using DNA methylation in whole blood.<br><b>Dataset</b><br>We evaluated the association between 1576 ESS CpG probes and 2247 negative control CpG probes versus risk of developing several types of cancer by mining case-control studies nested in the MCCS cohort. Specifically, we evaluated 433 case-control pairs for Breast Cancer (BC), 834 case-control pairs for Colorectal Cancer (CRC), 141 case-control pairs for Kidney Cancer (Kidney), 331 case-control pairs for Lung Cancer (Lung), 435 case-control pairs for Mature B-cell Neoplasm (MBCN), 863 case-control pairs for Prostate Cancer (PC), and 426 case-control pairs for Urothelial Cell Carcinoma (UCC). For reproducibility and further analysis by the community, we make the data available as normalized M-values.<br><b>Sample processing info</b>The methylation data were background corrected and normalized based on internal control probes using the manufacturer’s background correction, using the R library minfi. We also applied subset-quantile within-array normalization (SWAN) to correct for technical discrepancies between type I and type II probes on the assay. A β-value (interpreted as percentage methylation) was calculated for each CpG site using minfi. Methylation measures with a detection p-value higher than 0.01 were considered missing. Samples with more than 5% missing values were excluded; then, CpGs that were missing for more than 20% of samples were excluded. β-values were transformed into M-values for analysis: M=log2(β/(1-β)).<br><br><b>Publication</b><br>Timothy E. Van Baak, Cristian Coarfa, Pierre-Antoine Dugué, Giovanni Fiorito, Eleonora Laritsky, Maria S. Baker, Noah J. Kessler, Jianrong Dong, Jack D. Duryea, Matt J. Silver, Ayden Saffari, Andrew M. Prentice, Sophie E. Moore, Akram Ghantous, Michael N. Routledge, Yun Yun Gong, Zdenko Herceg, Paolo Vineis, Gianluca Severi, John L. Hopper, Melissa C. Southey, Graham G. Giles, Roger L. Milne, Robert A. Waterland. Epigenetic supersimilarity of monozygotic twin pairs. <b>Genome Biology,</b><br>
DOI: 10.6084/m9.figshare.5663467
title: Projections of Catphan phantom (CBCT)

description: CBCT projections and angles (with moving blocker) for Catphan phantom.File names are the geometry size.
DOI: 10.6084/m9.figshare.5663455
title: Data from "Disentangling the role of floral sensory stimuli to pollination networks"

description: <b>Supplementary Data 1:</b> The weighted plant-pollinator interactions network including 41 plant and 168 insect species, recorded in a Mediterranean scrubland (phrygana) in Lesvos Island, Greece.<br><b>Supplementary Data 2: </b>Inflorescence volatile compounds of the plant species studied.
DOI: 10.6084/m9.figshare.5663455.v1
title: Data from "Disentangling the role of floral sensory stimuli to pollination networks"

description: Supplementary Data from:Kantsa, A., Raguso, R. A., Dyer, A. G., Olesen, J. M., Tscheulin, T. & Petanidou, T. (2018) Disentangling the role of floral sensory stimuli in pollination networks. <i>Nature Communications</i>, in press. DOI: 10.1038/S41467-018-03448-W<br><b>Supplementary Data 1:</b> The weighted plant-pollinator interactions network including 41 plant and 168 insect species, recorded in a Mediterranean scrubland (phrygana) in Lesvos Island, Greece.<br><b>Supplementary Data 2: </b>Inflorescence volatile compounds of the plant species studied.
DOI: 10.6084/m9.figshare.5663455.v2
title: Data from "Disentangling the role of floral sensory stimuli to pollination networks", Nature Communications, in press.

description: <b>Supplementary Data 1:</b> The weighted plant-pollinator interactions network including 41 plant and 168 insect species, recorded in a Mediterranean scrubland (phrygana) in Lesvos Island, Greece.<br><b>Supplementary Data 2: </b>Inflorescence volatile compounds of the plant species studied.
DOI: 10.6084/m9.figshare.5663446
title: Projections of Pelvis phantom (CBCT)

description: CBCT projections and angles (with moving blocker) for Pelvis phantom.File names are the geometry size.
DOI: 10.6084/m9.figshare.5663446.v1
title: Projections of Pelvis phantom (CBCT)

description: CBCT projections and angles (with moving blocker) for Pelvis phantom.File names are the geometry size.
DOI: 10.6084/m9.figshare.5663407
title: Pelvis_WB_B20G20_L_512x512x679_prj.raw

description: Projection raw data (Pelvis phantom)
DOI: 10.6084/m9.figshare.5663407.v1
title: Pelvis_WB_B20G20_L_512x512x679_prj.raw

description: Projection raw data (Pelvis phantom)
DOI: 10.6084/m9.figshare.5663362
title: Carbon and oxygen isotope data in needles of loblolly pine

description: Foliar carbon and oxygen data of loblolly pine (<i>Pinus taeda</i>) was measured to understand the tree-level physiological responses to density management treatments in southeastern USA. <br><b></b>
DOI: 10.6084/m9.figshare.5663362.v2
title: Carbon and oxygen isotope data in needles of loblolly pine

description: Foliar carbon and oxygen data of loblolly pine (<i>Pinus taeda</i>) was measured to understand the tree-level physiological responses to density management treatments in southeastern USA. <br><b></b>
DOI: 10.6084/m9.figshare.5663362.v1
title: Loblolly pine foliar carbon and oxygen data

description: Foliar carbon and oxygen data of loblolly pine (<i>Pinus taeda</i>) was measured to understand the tree-level physiological responses to density management treatments in southeastern USA. <br><b></b>
DOI: 10.6084/m9.figshare.5663230.v1
title: Contribution of trees to the conservation of biodiversity and ecosystem services in agricultural landscapes

description: The production of sufficient food for an increasing global population while conserving natural capital is a major challenge to humanity. Tree-mediated ecosystem services are recognized as key features of more sustainable agroecosystems but the strategic management of tree attributes for ecosystem service provision is poorly understood. Six agroforestry and tree cover transition studies, spanning tropical/subtropical forest zones in three continents, were synthesized to assess the contribution of tree cover to the conservation of biodiversity and ecosystem services. Loss of native earthworm populations resulted in 76% lower soil macroporosity when shade trees were absent in coffee agriculture. Increased tree cover contributed to 53% increase in tea crop yield, maintained 93% of crop pollinators found in the natural forest and, in combination with nearby forest fragments, contributed to as much as 86% lower incidence for coffee berry borer. In certain contexts, shade trees contributed to negative effects resulting from increases in abundance of white stem borer and lacebugs and resulted in 60% reduction of endangered tree species compared to forest. Managing trees for ecosystem services requires understanding which tree species to include and how to manage them for different socio-ecological contexts. This knowledge needs to be shared and translated into viable options with farming communities.
DOI: 10.6084/m9.figshare.5663176
title: Processed files for Entrez Gene

description: Processed files.
DOI: 10.6084/m9.figshare.5663176.v6
title: Processed files for Entrez Gene

description: Processed files.
DOI: 10.6084/m9.figshare.5663176.v5
title: Entrez Gene Dataset

description: test file.