cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6234239
title: Additional file 1: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S1. Description of the samples. Values of N/A for the RNA integrity number correspond to three samples where this could not be calculated. No RNA was collected for five timepoints with unsuccessful blood draws. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234239.v1
title: Additional file 1: of Exploring gene expression biomarker candidates for neurobehavioral impairment from total sleep deprivation

description: Table S1. Description of the samples. Values of N/A for the RNA integrity number correspond to three samples where this could not be calculated. No RNA was collected for five timepoints with unsuccessful blood draws. (XLSX 20Â kb)
DOI: 10.6084/m9.figshare.6234224
title: Additional file 2 of Characterization of biofilm-forming capacity and resistance to sanitizers of a range of E. coli O26 pathotypes from clinical cases and cattle in Australia

description: Table S2. TableÂ 3, Exposure of E. coli O26 biofilms to Topactive Des., Kwiksan 22 and Profoam disinfectants for 2Â min. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6234224.v1
title: Additional file 2 of Characterization of biofilm-forming capacity and resistance to sanitizers of a range of E. coli O26 pathotypes from clinical cases and cattle in Australia

description: Table S2. TableÂ 3, Exposure of E. coli O26 biofilms to Topactive Des., Kwiksan 22 and Profoam disinfectants for 2Â min. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.6234203
title: Additional file 1: of Characterization of biofilm-forming capacity and resistance to sanitizers of a range of E. coli O26 pathotypes from clinical cases and cattle in Australia

description: Table S1. TableÂ 2, Biofilm formation on polystyrene microtiter plates, stainless steel coupons, glass slides and pellicle formation at the air-liquid interface. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.6234203.v1
title: Additional file 1: of Characterization of biofilm-forming capacity and resistance to sanitizers of a range of E. coli O26 pathotypes from clinical cases and cattle in Australia

description: Table S1. TableÂ 2, Biofilm formation on polystyrene microtiter plates, stainless steel coupons, glass slides and pellicle formation at the air-liquid interface. (XLSX 61 kb)
DOI: 10.6084/m9.figshare.6234200
title: Additional file 2: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S2. Circular-to-linear ratios for all detected circRNAs (XLSX 342Â kb)
DOI: 10.6084/m9.figshare.6234200.v1
title: Additional file 2: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S2. Circular-to-linear ratios for all detected circRNAs (XLSX 342Â kb)
DOI: 10.6084/m9.figshare.6234191
title: Additional file 1: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S1. Master summary of all detected circRNAs (XLSX 559Â kb)
DOI: 10.6084/m9.figshare.6234191.v1
title: Additional file 1: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S1. Master summary of all detected circRNAs (XLSX 559Â kb)
DOI: 10.6084/m9.figshare.6234188
title: Additional file 1: of Binary-state speciation and extinction method is conditionally robust to realistic violations of its assumptions

description: Speciation extinction simulation model. Source code (in C) for the simulation program used to generate the data used in this study. This file is also available via Dryad. (ZIP 12Â kb)
DOI: 10.6084/m9.figshare.6234188.v1
title: Additional file 1: of Binary-state speciation and extinction method is conditionally robust to realistic violations of its assumptions

description: Speciation extinction simulation model. Source code (in C) for the simulation program used to generate the data used in this study. This file is also available via Dryad. (ZIP 12Â kb)
DOI: 10.6084/m9.figshare.6234185
title: R script

description: R script performs mixed effects Poisson regression for species richness. Also, performs repeated measures ANOVA with multiple comparison post-hoc analysis.
DOI: 10.6084/m9.figshare.6234167
title: Additional file 10: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S7. Tool parameters used for circRNA detection in this study. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.6234167.v1
title: Additional file 10: of Circular RNA expression and regulatory network prediction in posterior cingulate astrocytes in elderly subjects

description: Table S7. Tool parameters used for circRNA detection in this study. (XLSX 45Â kb)
DOI: 10.6084/m9.figshare.6234161
title: Additional file 2: of Generation and comparative genomics of synthetic dengue viruses

description: List ofÂ the accession numbers of the DENV-1/DENV-2/DENV-3/DENV-4/ZIKV genomes analyzed. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.6234161.v1
title: Additional file 2: of Generation and comparative genomics of synthetic dengue viruses

description: List ofÂ the accession numbers of the DENV-1/DENV-2/DENV-3/DENV-4/ZIKV genomes analyzed. (XLSX 72 kb)
DOI: 10.5281/zenodo.4007993
title: Educação em saúde sobre câncer de pele para agentes comunitários de saúde de unidades de saúde da família em Belém-PA

description: The database is a result of a Extension Project named "Health education about skin cancer for community health agents in family health units in Belém-PA", what happened in 2018, with the endorsement of Federal University of Pará and the Ethics Comittee under nption number 2.516.981.
DOI: 10.5281/zenodo.4007992
title: Educação em saúde sobre câncer de pele para agentes comunitários de saúde de unidades de saúde da família em Belém-PA

description: The database is a result of a Extension Project named "Health education about skin cancer for community health agents in family health units in Belém-PA", what happened in 2018, with the endorsement of Federal University of Pará and the Ethics Comittee under nption number 2.516.981.
DOI: 10.6084/m9.figshare.6234125
title: Additional file 2: of Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

description: A listingÂ 192 indexes validated at Broad Genomics across multiple library methods and sequencer models. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.6234122
title: MOESM1 of High-oleate yeast oil without polyunsaturated fatty acids

description: Additional file 1. Heterologous gene sequences used in Tsakraklides et al. 2018.
DOI: 10.6084/m9.figshare.6234125.v1
title: Additional file 2: of Characterization and remediation of sample index swaps by non-redundant dual indexing on massively parallel sequencing platforms

description: A listingÂ 192 indexes validated at Broad Genomics across multiple library methods and sequencer models. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.6234122.v1
title: MOESM1 of High-oleate yeast oil without polyunsaturated fatty acids

description: Additional file 1. Heterologous gene sequences used in Tsakraklides et al. 2018.
DOI: 10.6084/m9.figshare.6234113
title: Additional file 3: of Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

description: Alignments from Analyses. All alignments and topologies of one-to-one orthologs used for analyses of molecular evolution are given as a single tarball. (TGZ 3336 kb)
DOI: 10.6084/m9.figshare.6234113.v1
title: Additional file 3: of Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

description: Alignments from Analyses. All alignments and topologies of one-to-one orthologs used for analyses of molecular evolution are given as a single tarball. (TGZ 3336 kb)
DOI: 10.6084/m9.figshare.6234092
title: Additional file 2: of Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

description: Tables S1 â S7. Additional data from analyses that were too large to fit on a single page are given as Excel speadsheets. (XLS 4168 kb)
DOI: 10.6084/m9.figshare.6234092.v1
title: Additional file 2: of Comparison of the Chinese bamboo partridge and red Junglefowl genome sequences highlights the importance of demography in genome evolution

description: Tables S1 â S7. Additional data from analyses that were too large to fit on a single page are given as Excel speadsheets. (XLS 4168 kb)
DOI: 10.6084/m9.figshare.6234050
title: Additional file 1: of Potential molecular mechanisms of overgrazing-induced dwarfism in sheepgrass (Leymus chinensis) analyzed using proteomic data

description: The identified 1022 proteins that had high credibility (FDRâ
DOI: 10.6084/m9.figshare.6234050.v1
title: Additional file 1: of Potential molecular mechanisms of overgrazing-induced dwarfism in sheepgrass (Leymus chinensis) analyzed using proteomic data

description: The identified 1022 proteins that had high credibility (FDRâ
DOI: 10.6084/m9.figshare.6233999
title: Additional file 1 of SIESTA: enhancing searches for optimal supertrees and species trees

description: Supplementary Materials. Software version numbers and commands. Three tables and nine figures presenting additional results. PDF (935 kb).
DOI: 10.6084/m9.figshare.6233999.v1
title: Additional file 1 of SIESTA: enhancing searches for optimal supertrees and species trees

description: Supplementary Materials. Software version numbers and commands. Three tables and nine figures presenting additional results. PDF (935 kb).
DOI: 10.5281/zenodo.4008004
title: Associated Data: RASPD+: Fast protein-ligand binding free energy prediction using simplified physicochemical features

description: Additional digital data to "RASPD+: Fast protein-ligand binding free energy prediction using simplified physicochemical features" (ChemRxiv preprint:https://doi.org/10.26434/chemrxiv.12636704). Associated code can be found at: https://github.com/HITS-MCM/RASPDplus Files: weights.tar.gz: contains the model weights of one random dataset split and its associated crossvalidation folds. Used for standard RASPD+ evaluation. additional_model_replicates.tar.gz: contains the remaining models trained on the full set of descriptors. external_test_sets.tar.gz: contains the descriptor tables for all external test sets used dude.tar.gz: contains the descriptor tables for and several identifier lists for evaluation on the Directory of Useful Decoys - Enhanced (DUD-E) run_outputs.tar.gz: Performance metric data and predicted values created during the model training and evaluation runs. Basis for the figures and metrics in the manuscript.
description: Update v2: added DUD-E instead of the old DUD
DOI: 10.6084/m9.figshare.6233921
title: Additional file 3 of A genome-wide survey of mutations in the Jurkat cell line

description: Supplementary Table S2. Duplications found in Jurkat with matches to pathogenic variants in dbVar. Matches were determined by 90% reciprocal overlap. All database matches are included with one dbVar entry per row. (CSV 17 kb)
DOI: 10.6084/m9.figshare.6233921.v1
title: Additional file 3 of A genome-wide survey of mutations in the Jurkat cell line

description: Supplementary Table S2. Duplications found in Jurkat with matches to pathogenic variants in dbVar. Matches were determined by 90% reciprocal overlap. All database matches are included with one dbVar entry per row. (CSV 17 kb)
DOI: 10.6084/m9.figshare.6233900
title: Additional file 2 of A genome-wide survey of mutations in the Jurkat cell line

description: Supplementary Table S1. Long deletions found in Jurkat with matches to pathogenic variants in dbVar. Matches were determined by 90% reciprocal overlap. All database matches are included with one dbVar entry per row. (CSV 7 kb)
DOI: 10.6084/m9.figshare.6233900.v1
title: Additional file 2 of A genome-wide survey of mutations in the Jurkat cell line

description: Supplementary Table S1. Long deletions found in Jurkat with matches to pathogenic variants in dbVar. Matches were determined by 90% reciprocal overlap. All database matches are included with one dbVar entry per row. (CSV 7 kb)
DOI: 10.6084/m9.figshare.6233867
title: Additional file 2: of Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy

description: Association results for Proliferative Diabetic Retinopathy GWAS. Only SNPs with pâ
DOI: 10.6084/m9.figshare.6233867.v1
title: Additional file 2: of Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy

description: Association results for Proliferative Diabetic Retinopathy GWAS. Only SNPs with pâ
DOI: 10.6084/m9.figshare.6233852
title: Additional file 5: of Purple Brassica oleracea var. capitata F. rubra is due to the loss of BoMYBL2–1 expression

description: DNA sequences of BoMYBL2–1 plus the front region or corresponding region of the gene. Gene names represented plant names descirbed in Table 1. TO1000 indicates reference sequence (Parkins et al. 2014). (TXT 86 kb)
DOI: 10.6084/m9.figshare.6233852.v1
title: Additional file 5: of Purple Brassica oleracea var. capitata F. rubra is due to the loss of BoMYBL2–1 expression

description: DNA sequences of BoMYBL2–1 plus the front region or corresponding region of the gene. Gene names represented plant names descirbed in Table 1. TO1000 indicates reference sequence (Parkins et al. 2014). (TXT 86 kb)
DOI: 10.6084/m9.figshare.6233843
title: Additional file 1: of Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy

description: Association results for Diabetic Macular Edema GWAS. Only SNPs with pâ
DOI: 10.6084/m9.figshare.6233843.v1
title: Additional file 1: of Genome-wide association studies for diabetic macular edema and proliferative diabetic retinopathy

description: Association results for Diabetic Macular Edema GWAS. Only SNPs with pâ
DOI: 10.6084/m9.figshare.6233660
title: Supplementary Dataset Associated with "Genome-centric view of carbon processing in thawing permafrost"

description: These data are associated with the manuscript "Genome-centric view of carbon processing in thawing permafrost". This includes the phylogenetic trees and alignments used to create the bacterial and archaeal trees, and the protein database.
DOI: 10.6084/m9.figshare.6233654
title: Dataset for: Bayesian Selective Response-Adaptive Design Using the Historical Control

description: High quality historical control data, if incorporated, may reduce sample size, trial cost and duration. A too optimistic use of the data, however, may result in bias under prior-data conflict. Motivated by well-publicized two-arm comparative trials in stroke, we propose a Bayesian design that both adaptively incorporates historical control data and selectively adapt the treatment allocation ratios within an ongoing trial responsively to the relative treatment effects. The proposed design differs from existing designs that borrow from historical controls. As opposed to reducing the number of subjects assigned to the control arm blindly, this design does so adaptively to the relative treatment effects only if evaluation of cumulated current trial data combined with the historical control suggests the superiority of the intervention arm. We used the effective historical sample size approach to quantify borrowed information on the control arm and modified the treatment allocation rules of the doubly adaptive biased coin design to incorporate the quantity. The modified allocation rules were then implemented under the Bayesian framework with commensurate priors addressing prior-data conflict. Trials were also more frequently concluded earlier in line with the underlying truth, reducing trial cost and duration, and yielded parameter estimates with smaller standard errors.
DOI: 10.6084/m9.figshare.6233654.v1
title: Dataset for: Bayesian Selective Response-Adaptive Design Using the Historical Control

description: High quality historical control data, if incorporated, may reduce sample size, trial cost and duration. A too optimistic use of the data, however, may result in bias under prior-data conflict. Motivated by well-publicized two-arm comparative trials in stroke, we propose a Bayesian design that both adaptively incorporates historical control data and selectively adapt the treatment allocation ratios within an ongoing trial responsively to the relative treatment effects. The proposed design differs from existing designs that borrow from historical controls. As opposed to reducing the number of subjects assigned to the control arm blindly, this design does so adaptively to the relative treatment effects only if evaluation of cumulated current trial data combined with the historical control suggests the superiority of the intervention arm. We used the effective historical sample size approach to quantify borrowed information on the control arm and modified the treatment allocation rules of the doubly adaptive biased coin design to incorporate the quantity. The modified allocation rules were then implemented under the Bayesian framework with commensurate priors addressing prior-data conflict. Trials were also more frequently concluded earlier in line with the underlying truth, reducing trial cost and duration, and yielded parameter estimates with smaller standard errors.
DOI: 10.6084/m9.figshare.6233624
title: The Stanford Track Collection

description: <br>This dataset accompanies the ICRA2011 paper "Towards 3D Object Recognition via Classification of Arbitrary Object Tracks" by Alex Teichman, Jesse Levinson, and Sebastian Thrun. It contains about 14,000 labeled tracks of objects as observed in natural street scenes by a Velodyne HDL-64E S2 LIDAR.
DOI: 10.6084/m9.figshare.6233624.v1
title: The Stanford Track Collection

description: <br>This dataset accompanies the ICRA2011 paper "Towards 3D Object Recognition via Classification of Arbitrary Object Tracks" by Alex Teichman, Jesse Levinson, and Sebastian Thrun. It contains about 14,000 labeled tracks of objects as observed in natural street scenes by a Velodyne HDL-64E S2 LIDAR.
DOI: 10.6084/m9.figshare.6233618
title: data.xlsx

description: <b>Improved ant colony optimization for aircraft scheduling and weapon-target assignment</b>
DOI: 10.6084/m9.figshare.6233591
title: #antibullying network .xlsx

description: #antibullying network in united kingdom
DOI: 10.6084/m9.figshare.6233591.v1
title: #antibullying network .xlsx

description: #antibullying network in united kingdom
DOI: 10.6084/m9.figshare.6233576
title: Redundant transcriptome assembly (Dataset 2)

description: Redundant transcriptome assembly based on reads obtained from all the prepared libraries.<br>
DOI: 10.6084/m9.figshare.6233576.v1
title: Redundant transcriptome assembly (Dataset 2)

description: Redundant transcriptome assembly based on reads obtained from all the prepared libraries.<br>
DOI: 10.6084/m9.figshare.6233573
title: Non-redundant peptide sequence set (Dataset4)

description: Non-redundant peptide sequence set
DOI: 10.6084/m9.figshare.6233570
title: Protein-coding transcript sequence set (Dataset3)

description: Protein-coding transcript sequence set
DOI: 10.6084/m9.figshare.6233567
title: Protein-coding transcript sequence set (amino acid) (Dataset3)

description: Protein-coding transcript sequence set (amino acid)
DOI: 10.6084/m9.figshare.6233567.v1
title: Protein-coding transcript sequence set (amino acid) (Dataset3)

description: Protein-coding transcript sequence set (amino acid)
DOI: 10.6084/m9.figshare.6233564
title: PKR modulates abnormal brain signaling in experimental obesity

description: data for <br>PKR modulates abnormal brain signaling in experimental obesity
DOI: 10.6084/m9.figshare.6233564.v1
title: PKR modulates abnormal brain signaling in experimental obesity

description: data for <br>PKR modulates abnormal brain signaling in experimental obesity
DOI: 10.6084/m9.figshare.6233540
title: Ebola virus outbreak, Bikoro, DRC, May 2018

description: A map depicting the location of Bikoro on the shores of Lake Tumba in the Democratic Republic of the Congo, site of an Ebola virus disease (EVD) outbreak in May 2018.All cases were reported from Ikoko Impenge health facility located about east from Bikoro.<br>
DOI: 10.6084/m9.figshare.6233540.v3
title: Ebola virus outbreak, Bikoro, DRC, May 2018

description: A map depicting the location of Bikoro on the shores of Lake Tumba in the Democratic Republic of the Congo, site of an Ebola virus disease (EVD) outbreak in May 2018.All cases were reported from Ikoko Impenge health facility located about 30km from Bikoro.<br>
DOI: 10.6084/m9.figshare.6233540.v5
title: Ebola virus outbreak, Bikoro, DRC, May 2018

description: A map depicting the location of Bikoro on the shores of Lake Tumba in the Democratic Republic of the Congo, site of an Ebola virus disease (EVD) outbreak in May 2018.All cases were reported from Ikoko Impenge health facility located about east from Bikoro.<br>
DOI: 10.6084/m9.figshare.6233540.v4
title: Ebola virus outbreak, Bikoro, DRC, May 2018

description: A map depicting the location of Bikoro on the shores of Lake Tumba in the Democratic Republic of the Congo, site of an Ebola virus disease (EVD) outbreak in May 2018.All cases were reported from Ikoko Impenge health facility located about east from Bikoro.<br>
DOI: 10.6084/m9.figshare.6233522
title: The influence of media exposure on university expectation of high school students Data

description: Data set for the associated manuscript.
DOI: 10.6084/m9.figshare.6233495
title: Manually collected grassland dataset

description: Contains 8 soil compaction readings collected manually at different depths per position in a grass field.
DOI: 10.6084/m9.figshare.6233522.v1
title: The influence of media exposure on university expectation of high school students Data

description: Data set for the associated manuscript.
DOI: 10.6084/m9.figshare.6233486
title: Grassland - Manually collected dataset

description: Manually collected data-set, to compare with ground-truth data.
DOI: 10.6084/m9.figshare.6233486.v1
title: Grassland - Manually collected dataset

description: Manually collected data-set, to compare with ground-truth data.
DOI: 10.6084/m9.figshare.6233219
title: Supplementary methods and Fig S1-S3 from Flexible memory controls sperm competition responses to male <i>Drosophila melanogaster</i>

description: Explanatory figures and GFP verification
DOI: 10.6084/m9.figshare.6233219.v1
title: Supplementary methods and Fig S1-S3 from Flexible memory controls sperm competition responses to male <i>Drosophila melanogaster</i>

description: Explanatory figures and GFP verification
DOI: 10.6084/m9.figshare.6231755
title: ESM3 from Spatial spread of <i>Wolbachia</i> in <i>Rhagoletis cerasi</i> populations

description: R-Code
DOI: 10.6084/m9.figshare.6231755.v1
title: ESM3 from Spatial spread of <i>Wolbachia</i> in <i>Rhagoletis cerasi</i> populations

description: R-Code
DOI: 10.6084/m9.figshare.6231746
title: ESM1 from Spatial spread of <i>Wolbachia</i> in <i>Rhagoletis cerasi</i> populations

description: Electronic Supplementary Material, S1: Information on collection sites and wCer2 infection status of Rhagoletis cerasi populations analyzed in Bakovic V, Schebeck M, Telschow A, Stauffer C, Schuler H Spatial spread of
DOI: 10.6084/m9.figshare.6231743
title: Data sheet from Role of the light source position in freely falling hoverflies' stabilization performances

description: Table including the data used for the statistical analysis and displayed results in the manuscript. Variables extracted are explained in the .xls document.
DOI: 10.6084/m9.figshare.6231743.v1
title: Data sheet from Role of the light source position in freely falling hoverflies' stabilization performances

description: Table including the data used for the statistical analysis and displayed results in the manuscript. Variables extracted are explained in the .xls document.