cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2dftrf
title: CCDC 2217825: Experimental Crystal Structure Determination

description: Related Article: Anna Wadyczyn, Łukasz John|2023|Inorg.Chem.|62|5520|doi:10.1021/acs.inorgchem.2c04546
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25345/c5rb6wc17
title: MassIVE MSV000091732 - One-STAGE Tip Method for TMT based Proteomic Analysis of Minimal Amount of Cells
title: LC-MS-based profiling of proteomes with isobaric tag labeling from low-quantity biological and clinical samples, including needle-core biopsies and laser capture microdissection, has been challenging due to limited amount and sample loss during preparation. To address this problem, we developed OnM (On-Column from Myers et al. and mPOP) modified On-column method combining freeze-thaw lysis of mPOP with isobaric tag labeling of On-Column method to minimize sample loss. OnM is a method that processes the sample in one STAGE-tip from cell lysis to Tandem Mass Tag (TMT) labeling without any transferring of the sample. In terms of protein coverage, cellular components, and TMT labeling efficiency, modified On-column (or OnM) displayed similar performance to the results from Myers et al. To evaluate the lower-limit processing capability of OnM, we utilized OnM for multiplexing and were able to quantify 301 proteins in a TMT 9-plex with 50 cells per channel. We optimized the method as low as 5 cells per channel in which we identified 51 quantifiable proteins. OnM method is a low-input proteomics method widely applicable and capable of identifying and quantifying proteomes from limited samples with tools that are readily available in majority of proteomic laboratories.
DOI: 10.26179/gspq-s335
title: Barometric Leveling Results, Pioneerskaya to Dome C
DOI: 10.5281/zenodo.5885703
title: Alphaproteobacteria protein dataset

description: This dataset contains faa and gff files originating from RefSeq Alphaproteobacteria complete sequence database available on 2020 Sept 5. Files ending with .phr, .pin, or .psq are blast database.
DOI: 10.5281/zenodo.5885702
title: Alphaproteobacteria protein dataset

description: This dataset contains faa and gff files originating from RefSeq Alphaproteobacteria complete sequence database available on 2020 Sept 5. Files ending with .phr, .pin, or .psq are blast database.
DOI: 10.5281/zenodo.7839301
title: Alphaproteobacteria protein dataset

description: This dataset contains faa and gff files originating from RefSeq Alphaproteobacteria complete sequence database available on 2020 Sept 5. Files ending with .phr, .pin, or .psq are blast database.
DOI: 10.5281/zenodo.7839478
title: data_bci_keio_trial

description: this is just a trial of zenodo as a wepage to upload all the data gathered during the brain experiments performed for my masters degree thesis research
DOI: 10.5281/zenodo.7839477
title: data_bci_keio_trial

description: this is just a trial of zenodo as a wepage to upload all the data gathered during the brain experiments performed for my masters degree thesis research
DOI: 10.6084/m9.figshare.22649093
title: Additional file 2 of The V protein in oncolytic Newcastle disease virus promotes HepG2 hepatoma cell proliferation at the single-cell level

description: Additional file 2.
DOI: 10.6084/m9.figshare.22649093.v1
title: Additional file 2 of The V protein in oncolytic Newcastle disease virus promotes HepG2 hepatoma cell proliferation at the single-cell level

description: Additional file 2.
DOI: 10.6084/m9.figshare.22649095
title: Additional file 1 of Experiential COVID-19 factors predicting resilience among Spanish adults

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22649095.v1
title: Additional file 1 of Experiential COVID-19 factors predicting resilience among Spanish adults

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22649104
title: Additional file 1 of Bidirectional screening and testing for TB and COVID-19 among outpatient department attendees: outcome of an initial intervention in Ghana

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22649104.v1
title: Additional file 1 of Bidirectional screening and testing for TB and COVID-19 among outpatient department attendees: outcome of an initial intervention in Ghana

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.22649132
title: Additional file 2 of DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing

description: Additional file 2: Table S1. Number of ADAR2-specific errors (ASEs) around editing sites in S.pombe. Table S2. Number of ASEs around random ‘A’ sites in S.pombe. Table S3. Primers used in experiments. Table S4. Predicted editing levels of sites collected from Ramaswami et al. Table S5. Predicted editing levels of sites collected from Peng et al. Table S6. Detected editing sites in Alu regions of 10 human transcripts.
DOI: 10.6084/m9.figshare.22649132.v1
title: Additional file 2 of DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using nanopore direct RNA sequencing

description: Additional file 2: Table S1. Number of ADAR2-specific errors (ASEs) around editing sites in S.pombe. Table S2. Number of ASEs around random ‘A’ sites in S.pombe. Table S3. Primers used in experiments. Table S4. Predicted editing levels of sites collected from Ramaswami et al. Table S5. Predicted editing levels of sites collected from Peng et al. Table S6. Detected editing sites in Alu regions of 10 human transcripts.
DOI: 10.6084/m9.figshare.22649164
title: Additional file 2 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 2.
DOI: 10.6084/m9.figshare.22649167
title: Additional file 3 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 3.
DOI: 10.6084/m9.figshare.22649167.v1
title: Additional file 3 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 3.
DOI: 10.6084/m9.figshare.22649173
title: Additional file 4 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 4.
DOI: 10.6084/m9.figshare.22649173.v1
title: Additional file 4 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 4.
DOI: 10.6084/m9.figshare.22649179
title: Additional file 5 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 5.
DOI: 10.6084/m9.figshare.22649179.v1
title: Additional file 5 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 5.
DOI: 10.6084/m9.figshare.22649182
title: Additional file 6 of Improved analysis of (e)CLIP data with RCRUNCH yields a compendium of RNA-binding protein binding sites and motifs

description: Additional file 6.
DOI: 10.6084/m9.figshare.22649195
title: Additional file 3 of The effect of physical activity on sleep disturbance in various populations: a scoping review of randomized clinical trials

description: Additional file 3. Summary of effect sizes of PA intervention and FITT-D in the included articles.
DOI: 10.6084/m9.figshare.22649195.v1
title: Additional file 3 of The effect of physical activity on sleep disturbance in various populations: a scoping review of randomized clinical trials

description: Additional file 3. Summary of effect sizes of PA intervention and FITT-D in the included articles.
DOI: 10.6084/m9.figshare.22649237
title: Additional file 2 of The retinal pigment epithelium displays electrical excitability and lateral signal spreading

description: Additional file 2: Table S1. Datasets
DOI: 10.6084/m9.figshare.22649237.v1
title: Additional file 2 of The retinal pigment epithelium displays electrical excitability and lateral signal spreading

description: Additional file 2: Table S1. Datasets
DOI: 10.6084/m9.figshare.22649294
title: Additional file 1 of Chidamide enhances cytotoxicity of doxorubicin by promoting autophagy and apoptosis in breast cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.22649294.v1
title: Additional file 1 of Chidamide enhances cytotoxicity of doxorubicin by promoting autophagy and apoptosis in breast cancer

description: Additional file 1.
DOI: 10.6084/m9.figshare.22649297
title: Additional file 2 of Chidamide enhances cytotoxicity of doxorubicin by promoting autophagy and apoptosis in breast cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.22649297.v1
title: Additional file 2 of Chidamide enhances cytotoxicity of doxorubicin by promoting autophagy and apoptosis in breast cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.22649380
title: Additional file 1 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 1. Description of FMT study and stool samples collected. a Description of FMT donor stool samples and SRA accession numbers. b Description of FMT recipient samples and SRA accession numbers. c Description of transplantation events.
DOI: 10.6084/m9.figshare.22649380.v1
title: Additional file 1 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 1. Description of FMT study and stool samples collected. a Description of FMT donor stool samples and SRA accession numbers. b Description of FMT recipient samples and SRA accession numbers. c Description of transplantation events.
DOI: 10.6084/m9.figshare.22649386
title: Additional file 3 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 3. Description of FMT metagenomes and co-assemblies. a Metagenome SRA accession numbers and number of metagenomic short-reads sequenced and mapped to co-assemblies and MAGs. b) Phylum level taxonomic composition of metagenomes. c) Genus level taxonomic composition of metagenomes. d) Summary statistics for contigs from metagenome co-assemblies.
DOI: 10.6084/m9.figshare.22649386.v1
title: Additional file 3 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 3. Description of FMT metagenomes and co-assemblies. a Metagenome SRA accession numbers and number of metagenomic short-reads sequenced and mapped to co-assemblies and MAGs. b) Phylum level taxonomic composition of metagenomes. c) Genus level taxonomic composition of metagenomes. d) Summary statistics for contigs from metagenome co-assemblies.
DOI: 10.6084/m9.figshare.22649389
title: Additional file 4 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 4. Description of MAGs. a Summary statistics and taxonomic assignments for MAGs. b and c Detection of Donor A and Donor B MAGs in FMT metagenomes, respectively. d and e Detection of Donor A and Donor B MAGs in global gut metagenomes, respectively. f and g Detection summary statistics of Donor A and Donor B MAGs in global gut metagenomes, respectively. h and i Mean non-outlier coverage of Donor A and Donor B MAG single-copy core genes in FMT metagenomes.
DOI: 10.6084/m9.figshare.22649389.v1
title: Additional file 4 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 4. Description of MAGs. a Summary statistics and taxonomic assignments for MAGs. b and c Detection of Donor A and Donor B MAGs in FMT metagenomes, respectively. d and e Detection of Donor A and Donor B MAGs in global gut metagenomes, respectively. f and g Detection summary statistics of Donor A and Donor B MAGs in global gut metagenomes, respectively. h and i Mean non-outlier coverage of Donor A and Donor B MAG single-copy core genes in FMT metagenomes.
DOI: 10.6084/m9.figshare.22649392
title: Additional file 5 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 5. Accession numbers of gut metagenomes from 17 countries.
DOI: 10.6084/m9.figshare.22649392.v1
title: Additional file 5 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 5. Accession numbers of gut metagenomes from 17 countries.
DOI: 10.6084/m9.figshare.22649398
title: Additional file 7 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 7. MAG subpopulation information. a and b Number of Donor A and Donor B MAG subpopulations detected in FMT metagenomes, respectively. c and d Subpopulation composition of Donor A and Donor B MAGs in FMT metagenomes, respectively.
DOI: 10.6084/m9.figshare.22649398.v1
title: Additional file 7 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 7. MAG subpopulation information. a and b Number of Donor A and Donor B MAG subpopulations detected in FMT metagenomes, respectively. c and d Subpopulation composition of Donor A and Donor B MAGs in FMT metagenomes, respectively.
DOI: 10.6084/m9.figshare.22649401
title: Additional file 8 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 8. MAG/recipient pair colonization outcomes and MAG mean coverage in the 2nd and 3rd quartiles in stool samples used for transplantation.
DOI: 10.6084/m9.figshare.22649401.v1
title: Additional file 8 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 8. MAG/recipient pair colonization outcomes and MAG mean coverage in the 2nd and 3rd quartiles in stool samples used for transplantation.
DOI: 10.6084/m9.figshare.22649410
title: Additional file 9 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 9. Description of HMI vs. LMI populations. a Taxonomic assignments and genome size estimates for high- and low-metabolic independence populations. b KEGG module completeness information for high- and low-metabolic independence populations. c Raw KEGG module enrichment information for high- and low-metabolic independence populations. d KEGG module enrichment and categorical information for the 33 modules enriched in high-metabolic independence populations. e and f Completeness information for the 33 modules enriched in high-metabolic independence populations in all high- and low-metabolic independence populations.
DOI: 10.6084/m9.figshare.22649416
title: Additional file 10 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 10. a List of genomes from healthy individuals and individuals with IBD. b Module completion values across genomes.
DOI: 10.6084/m9.figshare.22649416.v1
title: Additional file 10 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 10. a List of genomes from healthy individuals and individuals with IBD. b Module completion values across genomes.
DOI: 10.6084/m9.figshare.22649410.v1
title: Additional file 9 of Metabolic independence drives gut microbial colonization and resilience in health and disease

description: Additional file 9. Description of HMI vs. LMI populations. a Taxonomic assignments and genome size estimates for high- and low-metabolic independence populations. b KEGG module completeness information for high- and low-metabolic independence populations. c Raw KEGG module enrichment information for high- and low-metabolic independence populations. d KEGG module enrichment and categorical information for the 33 modules enriched in high-metabolic independence populations. e and f Completeness information for the 33 modules enriched in high-metabolic independence populations in all high- and low-metabolic independence populations.
DOI: 10.6084/m9.figshare.22649515
title: Additional file 1 of Role of iron in the reduction of anemia among women of reproductive age in low-middle income countries: insights from systematic review and meta-analysis

description: Additional file 1. Data extracted for Risk of Bias Assesment.
DOI: 10.6084/m9.figshare.22649515.v1
title: Additional file 1 of Role of iron in the reduction of anemia among women of reproductive age in low-middle income countries: insights from systematic review and meta-analysis

description: Additional file 1. Data extracted for Risk of Bias Assesment.
DOI: 10.6084/m9.figshare.22649519
title: Additional file 9 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 9: Supplemental Figure 5. Evaluating KEGG and gene network enrichment (Alpha versus Delta).
DOI: 10.6084/m9.figshare.22649519.v1
title: Additional file 9 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 9: Supplemental Figure 5. Evaluating KEGG and gene network enrichment (Alpha versus Delta).
DOI: 10.6084/m9.figshare.22649522
title: Additional file 10 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 10: Supplemental Figure 6. Evaluating KEGG and gene network enrichment (Beta versus Delta).
DOI: 10.6084/m9.figshare.22649522.v1
title: Additional file 10 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 10: Supplemental Figure 6. Evaluating KEGG and gene network enrichment (Beta versus Delta).
DOI: 10.6084/m9.figshare.22649525
title: Additional file 11 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 11: Supplemental Figure 7. Transcription factor binding sites and histone mark overlap.
DOI: 10.6084/m9.figshare.22649525.v1
title: Additional file 11 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 11: Supplemental Figure 7. Transcription factor binding sites and histone mark overlap.
DOI: 10.6084/m9.figshare.22649528
title: Additional file 12 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 12: Supplemental Figure 8. Aggregated transcription factor ATAC Seq and companion RNA-Seq expression in alpha, beta, and delta cells.
DOI: 10.6084/m9.figshare.22649528.v1
title: Additional file 12 of Chromatin accessibility differences between alpha, beta, and delta cells identifies common and cell type-specific enhancers

description: Additional file 12: Supplemental Figure 8. Aggregated transcription factor ATAC Seq and companion RNA-Seq expression in alpha, beta, and delta cells.
DOI: 10.15468/jdehub
title: Fungi Collection of Micromycetes

description: Macromycetes of the mountainous forest massif of the Karkaraly region Bio ecological features of mushrooms
DOI: 10.5281/zenodo.7453816
title: Replication package for: DEMAND AND WELFARE ANALYSIS IN DISCRETE CHOICE MODELS WITH SOCIAL INTERACTIONS

description: This replication package includes the dataset and stata code needed to produce the empirical results in the paper.
DOI: 10.5281/zenodo.7581543
title: Replication package for: DEMAND AND WELFARE ANALYSIS IN DISCRETE CHOICE MODELS WITH SOCIAL INTERACTIONS

description: This replication package includes the dataset and stata code needed to produce the empirical results in the paper.
DOI: 10.5281/zenodo.7662144
title: Replication package for: DEMAND AND WELFARE ANALYSIS IN DISCRETE CHOICE MODELS WITH SOCIAL INTERACTIONS

description: This replication package includes the dataset and stata code needed to produce the empirical results in the paper.
DOI: 10.5281/zenodo.7839515
title: Replication package for: DEMAND AND WELFARE ANALYSIS IN DISCRETE CHOICE MODELS WITH SOCIAL INTERACTIONS

description: This replication package includes the dataset and stata code needed to produce the empirical results in the paper.
DOI: 10.6084/m9.figshare.21198064
title: Crr and Intrapr. Article

description: -Ddbb with the variables used in the analyses -Stata sintax with the analyses
DOI: 10.6084/m9.figshare.21198064.v2
title: Crr and Intrapr. Article

description: -Ddbb with the variables used in the analyses -Stata sintax with the analyses
DOI: 10.5281/zenodo.7839527
title: Tables for VSD(Percutaneous Closure of VSDs with Different Duct-occluders)

description: The data contains Information about a Manuscript to be accessed by the journal.
DOI: 10.5281/zenodo.7839526
title: Tables for VSD(Percutaneous Closure of VSDs with Different Duct-occluders)

description: The data contains Information about a Manuscript to be accessed by the journal.
DOI: 10.26179/67mf-je89
title: International Antarctic Glaciological Project Data for 1978 From Casey
DOI: 10.5517/ccdc.csd.cc2dg0jf
title: CCDC 2218004: Experimental Crystal Structure Determination

description: Related Article: Yoshiaki Kokubo, Kazuki Tsuzuki, Hikari Sugiura, Shunsuke Yomura, Yuko Wasada-Tsutsui, Tomohiro Ozawa, Sachiko Yanagisawa, Minoru Kubo, Tomoyuki Takeyama, Takahide Yamaguchi, Yuichi Shimazaki, Shinichi Kugimiya, Hideki Masuda, Yuji Kajita|2023|Inorg.Chem.|62|5320|doi:10.1021/acs.inorgchem.2c01561
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2djdhv
title: CCDC 2220297: Experimental Crystal Structure Determination

description: Related Article: Yoshihiro Sekine, Sotaro Kusumoto, Akira Sugimoto, Manabu Nakaya, Shinya Hayami|2023|Cryst.Growth Des.|23|2013|doi:10.1021/acs.cgd.2c01398
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dlxmk
title: CCDC 2222719: Experimental Crystal Structure Determination

description: Related Article: Yoshihiro Sekine, Sotaro Kusumoto, Akira Sugimoto, Manabu Nakaya, Shinya Hayami|2023|Cryst.Growth Des.|23|2013|doi:10.1021/acs.cgd.2c01398
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.