cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7272/q6pk0dbk
title: Industry payments to physician journal editors

description: Background: Open Paymentsis a United States federal program
 mandating reporting of medical industry payments to
 physicians, increasing transparency of physician conflicts of
 interest (COI).Study objectives were to assess industry payments to
 physician-editors, and compare their financial COI rate to all physicians
 within the specialty.    Methods and Findings: We
 performed a retrospective analysis of prospectively collected data,
 reviewing Open Paymentsfrom August 1, 2013 to December 31, 2016.
 We reviewed general payments (“… not made in connection with a research
 agreement”) and research funding to “top tier” physician-editors of
 highly-cited medical journals. We compared payments to physician-editors
 and physicians-by-specialty. In 35 journals, 333 (74.5%) of 447 “top tier”
 US-based editors met inclusion criteria. Of these, 212 (63.7%) received
 industry-associated payments in the study period. In an average year, 141
 (42.3%) of physician-editors received any direct payments to themselves
 including general payments and research payments, 66 (19.8%) received
 direct payments &gt;$5,000 (National Institutes of Health threshold
 for a Significant Financial Interest), and 51 (15.3%) received
 &gt;$10,000. Mean annual general payments to physician-editors was
 $55,157 (median 3,512, standard deviation 561,885, range 10-10,981,153).
 Median general payments to physician-editors were mostly higher compared
 to all physicians within their specialty. Mean annual direct research
 payment to the physician-editor was $14,558 (median 4,000, range
 15-174,440). Mean annual indirect research funding to the
 physician-editor’s institution (highly valued by academic leaders such as
 departmental chairs and deans) was $175,282 (median 49,107, range
 0.18-5,000,000). The main study limitation was difficulty identifying
 physician-editorsprimarily responsible for making manuscript decisions.
   Conclusions: A substantial minority of physician-editors
 receive payments from industry within any given year, sometimes quite
 large. Most editors received payment of some kind during the four-year
 study period. Given the extent of editors’ influences and control of the
 medical literature, more robust and accessible editor COI declarations are
 recommended.   
description: Dataset was collected from Open Payments government database
 (publicly available to all), and by a search of senior editors of selected
 journals. The data filed here represent our descriptive statistics and
 summary of those data.
description: Understanding of the original database, familiarity with citation
 data, and the medical journal literature.
DOI: 10.5061/dryad.0560j1c
title: Data from: Renal impairment on clinical outcomes following endovascular recanalization

description: Objective: To determine the influence of renal impairment (RI) on clinical
 outcomes at 3 months and the risk of recurrent stroke in patients
 presenting with emergent large vessel occlusion (ELVO) treated with
 emergent endovascular treatment (EVT). Methods: Consecutive patients with
 anterior-circulation stroke due to ELVO treated with EVT in 21
 endovascular centers were included. Multivariate regressions were used to
 evaluate the association of RI with mortality, functional independence
 [modified Rankin Scale (mRS) score of 0-2], and functional improvement
 (shift in mRS score) at 3 months. The association between RI and the risk
 of recurrent stroke was evaluated using multivariate competing-risk
 regression analyses. Results: Finally, 628 ELVO patients [(mean age, 64.7
 ± 12.5 years, median NIHSS score, 17 points, 99 (15.8%) with RI] who
 underwent EVT were enrolled. After adjusting for other relevant variables,
 multivariate regression analysis indicated that RI was independently
 associated with functional independence [adjusted odds ratio (OR) 0.53,
 95% confidence interval (CI), 0.29-0.96; P=0.035)] at 3 months, but not
 with mortality or functional improvement. Multivariate competing-risk
 regression analysis showed that patients with RI who received EVT had a
 significantly higher risk of recurrent stroke [adjusted hazard ratios
 (HRs) 2.56, 95% CI 1.27-5.18; P=0.009] compared to those with normal renal
 function. Conclusion: Our results suggest that RI is an independent
 predictor of functional independence at 3 months as well as long-term risk
 of recurrent stroke in ELVO patients treated with EVT.
description: Supplementary
 TableSupplementary
 information.docx
DOI: 10.5061/dryad.mh4f7n3
title: Data from: SK2 channels in cerebellar Purkinje cells contribute to excitability modulation in motor learning-specific memory traces

description: Neurons store information by changing synaptic input weights. In addition,
 they can adjust their membrane excitability to alter spike output. Here,
 we demonstrate a role of such ‘intrinsic plasticity’ in behavioral
 learning in a mouse model that allows us to detect consequences of absent
 excitability modulation, without alterations in synaptic plasticity.
 SK2-type, calcium-dependent K+ conductances are involved in excitability
 control as they contribute to the afterhyperpolarization (AHP) following
 spike bursts. SK2 channels are downregulated in activity-dependent
 intrinsic plasticity in cerebellar Purkinje cells. To study the relevance
 of excitability adjustment in cerebellar learning, we generated and tested
 mice with a Purkinje cell-specific SK2 knockout (L7-SK2). Deletion of SK2
 channels enhanced Purkinje cell excitability and selectively prevented
 intrinsic plasticity. L7-SK2 mice showed impairment of eyeblink
 conditioning, but intact vestibulo-ocular reflex gain adaptation. Thus,
 cell-autonomous plasticity of membrane excitability can be isolated from
 synaptic plasticity and is essential for specific learned motor behaviors.
description: Grasselli et al Fig 1 -
 DataData related to Figure
 1Grasselli et al Fig 2 -
 DataData related to Figure
 2Grasselli et al Fig 3 -
 DataData related to Figure
 3Grasselli et al Fig 4 -
 DataData related to Figure
 4Grasselli et al Fig 5 -
 DataData related to Figure
 5Grasselli et al Fig 6 -
 DataData related to Figure
 6Grasselli et al Fig 7 -
 DataData related to Figure
 7Grasselli et al Fig S1
 DataData related to Figure
 S1Grasselli et al Fig S2
 DataData related to Figure
 S2Grasselli et al Fig S2-3
 DataData related to Figure
 S3
DOI: 10.6071/m38q15
title: A mathematical model of flow-mediated coagulation identifies factor V as a modifier of thrombin generation in hemophilia A

description: Hemophilia A is a bleeding disorder categorized as severe, mild, and
 moderate deficiencies in factor VIII (FVIII). Within these categories the
 variance in bleeding severity is significant and the origins unknown. The
 number of parameters that could modify bleeding are so numerous that
 experimental approaches are not feasible for considering all possible
 combinations. Consequently, we turn to a mathematical model of coagulation
 under flow to act as a screening tool to identify parameters that are most
 likely to enhance thrombin generation. We performed global sensitivity
 analysis on 110,000 simulations that varied coagulation factor levels by
 50-150% of their normal values in humans while holding FVIII levels at 1%.
 These simulations identified low factor V (FV) levels as the strongest
 candidate, with additional enhancement when combined with high prothrombin
 levels. This prediction was confirmed in two experimental models: Partial
 FV inhibition boosted fibrin deposition in flow assays performed at 100
 s^-1 on collagen-tissue factor surfaces using whole blood from individuals
 with mild and moderate FVIII deficiencies. Low FV (≥50%) or partial FV
 inhibition also augmented thrombin generation in FVIII-inhibited or
 FVIII-deficient plasma in calibrated automated thrombography. These
 effects were amplified by high prothrombin levels in both experimental
 models. Our mathematical model suggests a mechanism in which FV and FVIII
 compete to bind to factor Xa to initiate thrombin generation in low FV,
 FVIII-deficient blood. This unexpected result was made possible by a
 mechanistic mathematical model, providing an example of the potential of
 such models in making predictions in complex biological networks.
DOI: 10.5061/dryad.nf3jv47
title: Data from: Two new species of Parnassia (Celastraceae) from karst cave and Danxia landform in Southwest China

description: Two new species of Parnassia found in mountainous areas of Chongqing City,
 Southwest China, are described and illustrated: P. zhengyuanum M.X. Ren
 & J. Zhang and P. simianshanensis M.X. Ren, J. Zhang &
 Z.Y. Liu respectively. Parnassia zhengyuanum is found in a limestone cave
 near Mt. Jinfo, Nanchuan District, Chongqing City. This tiny plant has
 special spoon-shaped leaves and undivided staminodes with green apices.
 Parnassia simianshanensis was discovered in Mt. Simian, Jiangjin County,
 Chongqing City. This species grows along streams on red sandstones, i.e.
 in Danxia landform. It can be easily distinguished by its unique rhombic
 leaves and the five- or four-branched staminodes. The conservation status
 of P. zhengyuanum and P. simianshanensis are assessed respectively as
 ‘Critically Endangered’ (CR) and ‘VU’ (Vulnerable) according to IUCN
 criteria. The roles of karst and Danxia landforms in the speciation
 process are discussed.
DOI: 10.6086/d11t11
title: Surviving R Kelly

description: This tweet identifier dataset was collected from the Twitter streaming and
 search APIs to collect tweets containing the phrase "R Kelly" or
 the hashtag "#SurvivingRKelly" between December 25, 2018 and
 January 4, 2019. This partially covers the time period in which the 6 part
 Lifetime documentary Surviving R Kelly was released (January 3 to January
 5). It includes 1,431,655. The documentary had an estimated 1.9 million
 viewers.
description: This tweet identifier dataset was collected from the Twitter
 streaming and search APIs.
description: The tweet ids can be recreated (rehydrated) back into tweet by
 using the DocNow Hydrator App https://github.com/DocNow/hydrator
DOI: 10.6086/d1x374
title: Aretha Franklin

description: On August 16, 2018 Aretha Franklin died in Detroit, Michigan at the age of
 76. Franklin, also known as the Queen of Soul, had an award winning career
 as a singer, songwriter, actress and pianist while also being described as
 the voice of the civil rights movement.   This item contains two
 tweet id datasets. The first was collected from the search API during the
 response to the announcement of her death, which includes tweets from
 August 8 - August 19 using the query "Aretha Franklin"
 OR "Queen of Soul".  The second dataset was collected
 over August 24 to September 3, which includes the date of her funeral on
 August 31. This second dataset was collected from the search API using the
 query "Aretha Franklin" OR "Queen of Soul" OR
 ArethaHomegoing OR ArethaFranklinFuneral OR ArethaFranklin which
 includes hashtags that were trending at the time. The datasets contain
 2,832,128 and 1,332,442 tweet identifiers respectively.
description: The ids were collected from the Twitter Search API
description: Use the DocNow Hydrator App to recreate the original tweets from
 the tweet ids: https://github.com/DocNow/hydrator
DOI: 10.6078/d1xm30
title: Redefining Near-Unity Luminescence in Quantum Dots with Photothermal Threshold Quantum Yield

description: Herin is the code and example data sets for the publication titled:
 "Redefining Near-Unity Luminescence in Quantum Dots with Photothermal
 Threshold Quantum Yield." The abstract of this paper is as follows. A
 variety of optical applications rely on the absorption and reemission of
 light. The quantum yield of this process often plays an essential role.
 When the quantum yield deviates from unity by significantly less than 1%,
 applications such as luminescent concentrators and optical refrigerators
 become possible. To evaluate such high performance, we develop a
 measurement technique for luminescence efficiency with sufficient accuracy
 below 1 part per thousand. Photothermal threshold quantum yield was
 developed utilizing the quantization of light to minimize overall
 measurement uncertainty. This technique is used to guide a procedure
 capable of making ensembles of near-unity emitting CdSe/CdS core/shell
 quantum dots. The photothermal threshold quantum yield luminescence
 efficiency reaches 0.996 ± 0.002, indicating nearly complete suppression
 of nonradiative decay channels.
DOI: 10.25338/b8989f
title: Groove Loops: A Collection of Repeating Multi-Instrumental Patterns

description: This dataset contains 456 musical stimuli used in the series of studies
 reported in: Janata, P., Peterson, J., Ngan, C., Keum, B., Whiteside, H.,
 & Ran, S. (2018). Psychological and Musical Factors Underlying
 Engagement with Unfamiliar Music. Music Perception, 36(2),
 175-200. doi:10.1525/mp.2018.36.2.175
description: A single file is available for download titled,
 "grvloops_stimuli.zip" The unzipped directory
 contains two text files: grvloops_stimuli_README.txt –
 provides brief descriptions of the information contained in the columns of
 the data table contained in grvloops_merged_stiminfo.csv
 grvloops_merged_stiminfo.csv – a table containing information
 about each of the stimuli, including average ratings and stimulus property
 analyses, as well as their locations within the stimulus directory
 tree. The audio files are contained within the
 audio/groove/ directory tree The suffixes v1, v2, and
 v3, refer to Experiments 1,  2, and 3, respectively, as reported in the
 paper.
DOI: 10.7272/q63n21kb
title: Aberrant oligodendroglial-vascular interactions disrupt the Blood Brain Barrier triggering CNS inflammation

description: Disruption of the blood brain barrier (BBB) is critical to initiation and
 perpetuation of disease in Multiple Sclerosis (MS). We report here an
 interaction between oligodendroglia and vasculature in MS that
 distinguishes human white matter injury from normal rodent remyelination.
 We find perivascular clustering of oligodendrocyte precursor cells (OPCs)
 in active MS lesions, representing an inability to properly detach from
 vessels following perivascular migration. These perivascular OPCs can
 themselves disrupt the BBB, interfering with astrocyte end feet and
 endothelial tight junction integrity, resulting in altered vascular
 permeability and an associated CNS inflammation. Aberrant Wnt tone in OPCs
 mediates this dysfunctional vascular detachment, and also leads to OPC
 secretion of Wif1, that interferes with Wnt ligand function on endothelial
 cell tight junction integrity. Evidence for this defective
 oligodendroglial-vascular interaction in MS suggests that it may be both
 an impediment to OPC lesion recruitment and also a disease perpetuator via
 disruption of the BBB.
description: We purified total RNA from OPC cultured cell
 of Olig2cre:APCfloxed knock-out and APCfloxed of mice. RNAseq
 library was prepared using QuantSeq kit (Lexogen) according to the
 manufacturer’s instructions and sequenced 50-bp single-end on the HiSeq
 4000 (Illumina). 
 <strong>This data is fastq files of
 Olig2cre</strong><strong>:APCfl</strong><strong>oxed knock-out and APCfloxed at P4 and P9 time-points.</strong>
DOI: 10.5061/dryad.5qp11c9
title: Data from: How moles walk; it’s all thumbs

description: A hallmark of tetrapod evolution is the shift from sprawling posture with
 laterally splayed limbs to erect posture with the limbs extending below
 the body. However, in order to invade unique locomotor niches, some
 tetrapods secondarily evolved a sprawled posture. This includes moles,
 some of the most specialized digging tetrapods. Although their forelimb
 anatomy and posture facilitates burrowing, moles also walk long distances
 to forage for and transport food. Here we use X-ray Reconstruction of
 Moving Morphology (XROMM) to determine if the mole humerus rotates around
 its long axis during walking, as it does when moles burrow and echidnas
 walk, or alternatively protracts and retracts at the shoulder in the
 horizontal plane as seen in sprawling reptiles. Our results reject both
 hypotheses and demonstrate that forelimb kinematics during mole walking
 are unique among those described for tetrapods. The humerus is retracted
 and protracted in the parasagittal plane above, rather than below the
 shoulder joint and the false thumb, a sesamoid bone, supports body weight
 during the stance phase, which is relatively short. Our findings broaden
 our understanding of the diversity of tetrapod limb posture and locomotor
 evolution, demonstrate the importance of x-ray based techniques for
 revealing hidden kinematics, and highlight the importance of examining how
 joint morphology influences joint mobility.
description: mole walk XROMM
 data The zip file includes
 XROMM files of three moles walking on the surface and the CT scan data of
 their forelimbs. It also includes calibration files and XMA
 file. mole
 walk data.zip
DOI: 10.25349/d9kw2j
title: Floral traits influence the opportunity for selection among male gametophytes: independent and combined effects of style length and petal area

description: The data set included here was used for the analyses published in a paper
 titled, " American Journal of Botany, for which the abstract is as
 follows: PREMISE: Strong correlations between traits can obscure their
 independent effects on components of reproduction.  Style length
 (SL) and petal area (PA) vary within species, for example, but their
 independent effects on the opportunity for selection among pollen
 genotypes are poorly understood. Previous work in Clarkia detected a
 positive effect of SL on pollen receipt, potentially intensifying
 selection.  However, this apparent effect of SL may be influenced
 by a correlated trait, such as PA. Here, we examine the independent
 effects of these two traits on pollen receipt and performance.  
 METHODS: We collected petals and styles from wild populations of two
 insect-pollinated Clarkia taxa and estimated the independent and combined
 effects of SL and PA on pollen receipt and performance.  
 RESULTS:  In both taxa, SL and PA are positively
 correlated.  In C. unguiculata, both traits positively and
 independently affect pollen receipt, but in C. xantiana ssp. xantiana, the
 two traits act only in combination to affect pollen receipt. In both taxa,
 pollen receipt positively affects the numbers of pollen tubes entering and
 penetrating the style, as well as pollen tube attrition.  
 CONCLUSIONS: The effects of SL and PA on pollen receipt and performance
 are taxon-specific. In C. unguiculata, both traits may be independent
 targets of selection due to their effects on pollen receipt. In C.
 xantiana ssp. xantiana, by contrast, the combined (but not independent)
 effects of SL and PA influence pollen receipt. Ecological differences
 between these taxa require exploration to understand the mechanisms by
 which these traits affect pollinator behavior.   Key words:
 Clarkia, gametophytic selection, pollen tube growth rate, pollination,
 pollen attrition, sexual selection, style length.
DOI: 10.7272/q6t43r78
title: Sexual harassment in the library: understanding experiences and taking action

description: Sexual harassment in libraries exists, but it has not been comprehensively
 studied. In the wake of the #MeToo movement and shared anecdotal
 experiences, library staff members at the University of California, San
 Francisco were empowered to address this issue in our library. This paper
 will present the results of our survey of sexual harassment experiences of
 our staff and, in an effort to encourage other academic library workers to
 spearhead similar efforts in their own environments, will document our
 process of developing anti-sexual harassment efforts in our library.
description: <strong>Appendix 1.</strong> Survey
 instrument.  <strong>Appendix 2.</strong>
 Summary report of survey results.
DOI: 10.15146/r3z40m
title: Journal

description: The current ratio (CR), debt to equity ratio (DER), return on assets (ROA)
 and return on equity (ROE) affect the stock price of telecommunications
 sector companies and components listed on the Indonesia Stock Exchange
 period 2009 - 2017. The technique using a purposive sampling technique
 which means choosing a sample with the criteria (1) Companies listed on
 the Indonesia Stock Exchange (IDX) during the period 2009 - 2017 (2)
 Indonesia Stock Exchange (IDX) Companies registered in the
 telecommunications sector during 2009 - 2017 period (3) Companies that
 always present the financial report data for the period 2009 - 2017 (4)
 Companies that always complete the financial report for the data period
 2009 - 2017. The analytical method used is the multiple linear regression
 and classical assumption test. The debt to equity ratio (DER) does not
 partially affect stock prices, and returns on equity (ROE) has a partial
 effect on stock prices. While the simultaneous or together ratio (CR), the
 debt to equity ratio (DER), return on assets (ROA) and return on equity
 (ROE) affect the stock price.
description: <i>The technique
 using a purposive sampling technique which means choosing a sample with
 the criteria (1) Companies listed on the Indonesia Stock Exchange (IDX)
 during the period 2009 - 2017 (2) Indonesia Stock Exchange (IDX) Companies
 registered in the telecommunications sector during 2009 - 2017 period (3)
 Companies that always present the financial report data for the period
 2009 - 2017 (4) Companies that always complete the financial report for
 the data period 2009 - 2017. The analytical method used is the multiple
 linear regression and classical assumption test.</i>
description: <i>The debt to equity ratio (DER) does not partially affect
 stock prices, and returns on equity (ROE) has a partial effect on stock
 prices. While the simultaneous or together ratio (CR), the debt to equity
 ratio (DER), return on assets (ROA) and return on equity (ROE) affect the
 stock price.</i>