cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7712234.v1
title: Genetic analysis of KillerRed in <i>C. elegans</i> identifies a shared role of calcium genes in ROS-mediated neurodegeneration

description: In <i>C. elegans</i>, neurodegeneration induced by excitotoxicity or aggregation of misfolded proteins is dependent on genes involved in calcium release from the endoplasmic reticulum. Reactive oxygen species (ROS) can also induce neurodegeneration, but the relationship between ROS-mediated neurodegeneration and calcium has not been established. We activated KillerRed in the GABA neurons of <i>C. elegans</i> to produce ROS that leads to functional loss and structural degeneration of these neurons and demonstrated that the severity of neurodegeneration was dependent on extent of KillerRed activation. To genetically examine the role of calcium in ROS-mediated neurodegeneration, we measured functional neurodegeneration in <i>itr-1</i> (inositol trisphosphate receptor), <i>crt-1</i> (caltreticulin), and <i>unc-68</i> (ryanodine receptor) mutants. Similar to other neurotoxic conditions, neurodegeneration triggered by KillerRed was reduced in <i>itr-1</i> and <i>crt-1</i> mutants. Somewhat unexpectedly, genetic or pharmacological disruption of <i>unc-68</i> had a minimal effect on neurodegeneration. Our results indicate ROS-mediated neurodegeneration occurs through a conserved calcium regulated mechanism and suggest that components of the degeneration process have different sensitivities to ROS.
DOI: 10.6084/m9.figshare.7712219
title: Characters of repetitive elements in Cissus quadrangularis R1

description: Fastq-files R1 Sequences
DOI: 10.7284/114501
title: Fluorometer data collected during research cruise AT25 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712219.v1
title: Characters of repetitive elements in Cissus quadrangularis R1

description: Fastq-files R1 Sequences
DOI: 10.7284/110974
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT25 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712171
title: Flyer for Publishers

description: DOAJ's 2018 flyer highlighting the benefits for publishers
DOI: 10.7284/114590
title: Meteorological Station data collected during research cruise AT25 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712171.v1
title: Flyer for Publishers

description: DOAJ's 2018 flyer highlighting the benefits for publishers
DOI: 10.7284/114591
title: Meteorological Station data collected during research cruise AT25 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712099
title: u2 test report

description: string
DOI: 10.6084/m9.figshare.7712123
title: References in 10.1002/asi.20755 from author 0000-0003-0159-013Xchange license

description: References from paper 10.1002/asi.20755 - My ORCID is 0000-0003-0159-013X
DOI: 10.6084/m9.figshare.7712099.v1
title: u2 test report

description: string
DOI: 10.7284/110871
title: Multibeam Echosounder data collected during research cruise AT25 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712123.v2
title: References in 10.1002/asi.20755 from author 0000-0003-0159-013Xchange license

description: References from paper 10.1002/asi.20755 - My ORCID is 0000-0003-0159-013X
DOI: 10.7284/114536
title: Radiometer data collected during research cruise AT25 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712123.v1
title: References in 10.1002/asi.20755 from author 0000-0003-0159-013X

description: References from paper 10.1002/asi.20755 - My ORCID is 0000-0003-0159-013X
DOI: 10.6084/m9.figshare.7712084
title: VOI paper equal cost

description: Matlab code for equal management cost
DOI: 10.6084/m9.figshare.7712084.v1
title: VOI paper equal cost

description: Matlab code for equal management cost
DOI: 10.7284/114554
title: Radiometer data collected during research cruise AT25 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7712069
title: Isotherm and kinetic studies for heptachlor removal from aqueous solution using Fe/Cu nanoparticles, artificial intelligence, and regression analysis

description: This study was conducted to investigate the removal efficiency of heptachlor from aqueous solutions using bimetallic iron/copper (Fe/Cu) nanoparticles. The highest removal efficiency of 99.3% for heptachlor compounds was achieved at pH 7.0, bimetallic Fe/Cu dosage 0.33 g/L, initial heptachlor concentration 2 µg/L, contact time 30 min, and stirring rate 250 rpm. The adsorption data of heptachlor fitted well to Koble–Corrigan isotherm and Avrami kinetic model. Artificial neural network <i>r</i><sup>2</sup>: 0.9567) was more precise than the response surface methodology (<i>r</i><sup>2</sup>: 0.774) in simulating the adsorption of heptachlor onto the bimetallic Fe/Cu nanoparticles. This study indicated that bimetallic Fe/Cu could be employed as an efficient adsorbent for the removal of heptachlor compound.
DOI: 10.7284/114572
title: Water Temperature data collected during research cruise AT25 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114518
title: TSG (Thermosalinograph) data collected during research cruise AT25 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112037
title: Multiplexed data collected during research cruise AT26-01 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711967
title: MOESM1 of Serial electrocardiography to detect newly emerging or aggravating cardiac pathology: a deep-learning approach

description: Additional file 1. NeuronWeightAndBias.mat is a Matlab file, that contains the Weights and Biases of the neural network obtained bythe repeated structuring and learning procedure.
DOI: 10.7284/112038
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT26-01 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711967.v1
title: MOESM1 of Serial electrocardiography to detect newly emerging or aggravating cardiac pathology: a deep-learning approach

description: Additional file 1. NeuronWeightAndBias.mat is a Matlab file, that contains the Weights and Biases of the neural network obtained bythe repeated structuring and learning procedure.
DOI: 10.7284/114502
title: Fluorometer data collected during research cruise AT26-01 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112036
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-01 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114592
title: Meteorological Station data collected during research cruise AT26-01 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711934
title: Additional file 1: of PRIMA-1MET-induced neuroblastoma cell death is modulated by p53 and mycn through glutathione level

description: Whole exome sequencing of neuroblastoma cells. (XLSX 439 kb)
DOI: 10.7284/114593
title: Meteorological Station data collected during research cruise AT26-01 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711934.v1
title: Additional file 1: of PRIMA-1MET-induced neuroblastoma cell death is modulated by p53 and mycn through glutathione level

description: Whole exome sequencing of neuroblastoma cells. (XLSX 439 kb)
DOI: 10.7284/112040
title: Multibeam Echosounder data collected during research cruise AT26-01 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114537
title: Radiometer data collected during research cruise AT26-01 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114555
title: Radiometer data collected during research cruise AT26-01 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114573
title: Water Temperature data collected during research cruise AT26-01 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114519
title: TSG (Thermosalinograph) data collected during research cruise AT26-01 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112043
title: Multiplexed data collected during research cruise AT26-02 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112045
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT26-02 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112044
title: Expendable Probe data collected during research cruise AT26-02 using a Sippican MK12 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114503
title: Fluorometer data collected during research cruise AT26-02 using a WET Labs WETStar instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/112042
title: GNSS (Global Navigation Satellite System) data collected during research cruise AT26-02 using a C&C C-Nav 2050G instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4004784
title: Blockchain in Procurement - Paper List

description: Here we present the list of our analyzed papers.
DOI: 10.7284/114594
title: Meteorological Station data collected during research cruise AT26-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4004783
title: Blockchain in Procurement - Paper List

description: Here we present the list of our analyzed papers.
DOI: 10.6084/m9.figshare.7711796
title: Additional file 8: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S7. Differential expression of genes involved in responding to the oxidative stress in methane and methanol. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7711799
title: Additional file 9: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S8. Differential expression of genes in pDH1 plasmid in methane and methanol. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.7711799.v1
title: Additional file 9: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S8. Differential expression of genes in pDH1 plasmid in methane and methanol. (XLSX 30 kb)
DOI: 10.7284/114595
title: Meteorological Station data collected during research cruise AT26-02 using a Vaisala WXT520 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711790
title: Additional file 7: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S6. Differential expression of genes involved in hopanoid biosynthesis pathway in methane and methanol. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7711796.v1
title: Additional file 8: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S7. Differential expression of genes involved in responding to the oxidative stress in methane and methanol. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.7711790.v1
title: Additional file 7: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S6. Differential expression of genes involved in hopanoid biosynthesis pathway in methane and methanol. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7711784
title: Additional file 6: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S5. Differential expression of genes involved in MEP pathway and carotenoid biosynthesis pathway in methane and methanol. (XLSX 12 kb)
DOI: 10.7284/112092
title: Multibeam Echosounder data collected during research cruise AT26-02 using a Kongsberg EM122 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711784.v1
title: Additional file 6: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S5. Differential expression of genes involved in MEP pathway and carotenoid biosynthesis pathway in methane and methanol. (XLSX 12 kb)
DOI: 10.7284/114538
title: Radiometer data collected during research cruise AT26-02 using a Eppley PIR instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711772
title: Additional file 4: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S4. Differential expression of genes involved in serine and TCA cycle in methane and methanol. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7711775
title: Additional file 4: of A longitudinal prospective cohort study investigating the association of premilking stimulation and teat-end shape on milking characteristics and teat tissue condition in dairy cows

description: Raw data used for the statistical analyses in this study. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.7711769
title: Additional file 3: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S3. Differential expression of genes involved in RuMP cycle, EMP and EDD pathway in methane and methanol. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7711772.v1
title: Additional file 4: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S4. Differential expression of genes involved in serine and TCA cycle in methane and methanol. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7711775.v1
title: Additional file 4: of A longitudinal prospective cohort study investigating the association of premilking stimulation and teat-end shape on milking characteristics and teat tissue condition in dairy cows

description: Raw data used for the statistical analyses in this study. (XLSX 34 kb)
DOI: 10.7284/114556
title: Radiometer data collected during research cruise AT26-02 using a Eppley PSP instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711769.v1
title: Additional file 3: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S3. Differential expression of genes involved in RuMP cycle, EMP and EDD pathway in methane and methanol. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7711763
title: Additional file 2: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S2. Differential expression of genes involved in methane, methanol and formaldehyde oxidation in methane and methanol. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7711754
title: Additional file 1: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S1. Ten genes most highly expressed in Methylomonas sp. DH-1 in methane. (XLSX 12 kb)
DOI: 10.7284/114574
title: Water Temperature data collected during research cruise AT26-02 using a Sea-Bird SBE-48 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711754.v1
title: Additional file 1: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S1. Ten genes most highly expressed in Methylomonas sp. DH-1 in methane. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7711763.v1
title: Additional file 2: of A comparative transcriptome analysis of the novel obligate methanotroph Methylomonas sp. DH-1 reveals key differences in transcriptional responses in C1 and secondary metabolite pathways during growth on methane and methanol

description: Table S2. Differential expression of genes involved in methane, methanol and formaldehyde oxidation in methane and methanol. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7711742
title: Additional file 1: of Effect of the macroalgae Asparagopsis taxiformis on methane production and rumen microbiome assemblage

description: Table S1. Quality filtering and OTU distribution at each incubation time. Table S2. Diversity indices at each incubation time. Figures S1A., S1B, S1C Rarefaction curves of equilibration, control and A. taxiformis amended vessels respectively. Figure S2. Principle Coordinate Analysis plot. Table S3. OTU table. Table S4. Raw sequence barcodes for archived 16S rRNA gene amplicon data. Table S5. Results of AMOVA and HOMOVA statistical tests. (XLSX 3751 kb)
DOI: 10.6084/m9.figshare.7711745
title: Additional file 1: of The Australian dingo: untamed or feral?

description: Endocranial volume and body mass values used to produce Fig. 3. Raw landmark data are available from [81]. (XLSX 111 kb)
DOI: 10.6084/m9.figshare.7711745.v1
title: Additional file 1: of The Australian dingo: untamed or feral?

description: Endocranial volume and body mass values used to produce Fig. 3. Raw landmark data are available from [81]. (XLSX 111 kb)
DOI: 10.7284/114520
title: TSG (Thermosalinograph) data collected during research cruise AT26-02 using a Sea-Bird SBE-45 instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711742.v1
title: Additional file 1: of Effect of the macroalgae Asparagopsis taxiformis on methane production and rumen microbiome assemblage

description: Table S1. Quality filtering and OTU distribution at each incubation time. Table S2. Diversity indices at each incubation time. Figures S1A., S1B, S1C Rarefaction curves of equilibration, control and A. taxiformis amended vessels respectively. Figure S2. Principle Coordinate Analysis plot. Table S3. OTU table. Table S4. Raw sequence barcodes for archived 16S rRNA gene amplicon data. Table S5. Results of AMOVA and HOMOVA statistical tests. (XLSX 3751 kb)
DOI: 10.7284/112047
title: Multiplexed data collected during research cruise AT26-03 using a WHOI Calliope instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711724
title: Additional file 8: of Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data

description: Table S1. List of congenic DEGs in the Sall2 KO line (MEFs). Congenic DEGs with missense mutations are depicted in red. Table S2. DEGs between Sall2 WT and KO MEFs under doxorubicin perturbation (FDRâ
DOI: 10.6084/m9.figshare.7711721
title: Additional file 7: of Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data

description: Table S1. DEGs between Sall2 WT and Sall2 KO (FDRâ
DOI: 10.7284/112048
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AT26-03 using a Hawaii UHDAS instrument system onboard the platform RV Atlantis

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7711721.v1
title: Additional file 7: of Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data

description: Table S1. DEGs between Sall2 WT and Sall2 KO (FDRâ
DOI: 10.6084/m9.figshare.7711724.v1
title: Additional file 8: of Streamlined computational pipeline for genetic background characterization of genetically engineered mice based on next generation sequencing data

description: Table S1. List of congenic DEGs in the Sall2 KO line (MEFs). Congenic DEGs with missense mutations are depicted in red. Table S2. DEGs between Sall2 WT and KO MEFs under doxorubicin perturbation (FDRâ