cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12153597
title: Red and blond Mangalitza pigs display a signature of divergent directional selection in the SLC45A2 gene

description: The Mangalitza lard-type pig breed is well known for its fatty appearance and curly hair, and it is mainly distributed in Eastern Europe. Four main varieties were created in the 19<sup>th</sup> century by artificial selection: Blond Mangalitza, Black Mangalitza, Swallow Belly Mangalitza, and Red Mangalitza. The Swallow Belly variety has a black coat combined with yellow blond throat and underbelly. In the current work, we aimed to investigate if the colourations of Mangalitza pigs are genetically determined by one or a few loci which frequencies have been modified by artificial selection. Performance of selection scans, with hapFLK and BayeScan, and of a genome-wide association study for coat colour in Red, Swallow Belly and Blond Mangalitza pigs, highlighted the existence of one region on SSC16 (18-20 Mb) with potential effects on hair pigmentation. The analysis of the gene content of this region allowed us to detect the solute carrier family 45 member 2 (<i>SLC45A2</i>) gene. The polymorphisms of this gene has been associated with reduced levels or absence of melanin in several mammalian species. The genotyping of four missense polymorphisms evidenced that rs341599992:G&gt;A and rs693695020:G&gt;A SNPs are strongly but not fully associated with the red and blond coat colours of Mangalitza pigs, a result that was confirmed by performing a haplotype association test. The near fixation of alternative <i>SLC45A2</i> genotypes in Red and Blond Mangalitza pigs provides a compelling example of the consequences of a divergent directional selection for coat colour in a domestic species.
DOI: 10.6084/m9.figshare.13117961.v2
title: Supplementary Tables

description: Supplemental tables for manuscript entitled: Differential mitochondrial gene expression in adipose tissue following weight loss induced by diet or bariatric surgery
DOI: 10.6084/m9.figshare.12153597.v1
title: Red and blond Mangalitza pigs display a signature of divergent directional selection in the SLC45A2 gene

description: The Mangalitza lard-type pig breed is well known for its fatty appearance and curly hair, and it is mainly distributed in Eastern Europe. Four main varieties were created in the 19<sup>th</sup> century by artificial selection: Blond Mangalitza, Black Mangalitza, Swallow Belly Mangalitza, and Red Mangalitza. The Swallow Belly variety has a black coat combined with yellow blond throat and underbelly. In the current work, we aimed to investigate if the colourations of Mangalitza pigs are genetically determined by one or a few loci which frequencies have been modified by artificial selection. Performance of selection scans, with hapFLK and BayeScan, and of a genome-wide association study for coat colour in Red, Swallow Belly and Blond Mangalitza pigs, highlighted the existence of one region on SSC16 (18-20 Mb) with potential effects on hair pigmentation. The analysis of the gene content of this region allowed us to detect the solute carrier family 45 member 2 (<i>SLC45A2</i>) gene. The polymorphisms of this gene has been associated with reduced levels or absence of melanin in several mammalian species. The genotyping of four missense polymorphisms evidenced that rs341599992:G&gt;A and rs693695020:G&gt;A SNPs are strongly but not fully associated with the red and blond coat colours of Mangalitza pigs, a result that was confirmed by performing a haplotype association test. The near fixation of alternative <i>SLC45A2</i> genotypes in Red and Blond Mangalitza pigs provides a compelling example of the consequences of a divergent directional selection for coat colour in a domestic species.
DOI: 10.5281/zenodo.4549631
title: Quantitative photoacoustic oximetry imaging by multiple illumination learned spectral decoloring - Data

description: All training, validation and test data sets for the initial MI-LSD publication. The raw Monte Carlo simulation results and raw PA scans are too large for upload - 3 TB - but available from the authors upon reasonable request.
DOI: 10.5281/zenodo.4549630
title: Quantitative photoacoustic oximetry imaging by multiple illumination learned spectral decoloring - Data

description: All training, validation and test data sets for the initial MI-LSD publication. The raw Monte Carlo simulation results and raw PA scans are too large for upload - 3 TB - but available from the authors upon reasonable request.
DOI: 10.20351/29gd20030923
title: RECS-4_BIS Cruise, RV García del Cid 

description: RECS-4_BIS Cruise (29GD20030923) carried out on the Research Vessel García del Cid in 2003
DOI: 10.7277/7m8z-wb35
title: Performance Evaluation of Semi-rigid Steel Frames Using Hybrid Simulation (NEES-2010-0981)

description: &lt;p&gt;&lt;strong&gt;Title&lt;/strong&gt;: Performance Evaluation of Semi-rigid Steel Frames Using Hybrid Simulation (NEES-2010-0981)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2014&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;The widespread and unexpected damage to welded connections during recent earthquakes led to the investigation of alternatives for the construction of steel frames in seismic areas. Bolted semi-rigid connections have been recognized as an attractive alternative to welded connections. However, existing knowledge on the behavior of the connection is either from testing of beam- to-column subassemblies under idealized load and boundary conditions, or from analytical studies. In addition, the system-level experimental behavior of semi-rigidly connected frames using real earthquake motions to conclusively verify the full potential of semi-rigidity (implying also partial-strength) in earthquake resistance application is lacking. To this end, an advanced hybrid simulation approach for the seismic assessment of steel frames with semi-rigid connections was proposed and successfully completed. Furthermore, nonlinear dynamic response-history analyses of semi-rigid frames with varying design parameters were conducted to evaluate the system performance under seismic events. The results of the hybrid simulation and the parametric studies are used to quantify various fundamental code parameters needed for the seismic design of structures.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;MAE Center&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;Amr Elnashai&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;April 24, 2009 - August 04, 2010&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;University of Illinois at Urbana-Champaign, IL, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;University of Illinois at Urbana-Champaign, IL, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;MAE Center&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications:&lt;/strong&gt;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.6084/m9.figshare.14074496
title: Variable description and experimental data

description: Variable
DOI: 10.5281/zenodo.4555503
title: Dataset_Proportionofgrasslandatlandscapescaledrivesnaturalpestcontrolservicesinagriculturallandscapes

description: Data set used for the publication Perrot et al. "Proportion of grassland at landscape scale drives natural pest control services in agricultural landscapes"
description: {"references": ["Perrot et al. Proportion of grassland at landscape scale drives natural pest control services in agricultural landscapes"]}
DOI: 10.5281/zenodo.4555502
title: Dataset_Proportionofgrasslandatlandscapescaledrivesnaturalpestcontrolservicesinagriculturallandscapes

description: Data set used for the publication Perrot et al. "Proportion of grassland at landscape scale drives natural pest control services in agricultural landscapes"
description: {"references": ["Perrot et al. Proportion of grassland at landscape scale drives natural pest control services in agricultural landscapes"]}
DOI: 10.17632/wybdsgd59r.1
title: Maleimide self-reaction in furan/maleimide-based reversibly crosslinked polyketones: Processing limitation or potential advantage?

description: Polymers crosslinked via furan/maleimide thermo-reversible chemistry have been extensively explored as reprocessable and self-healing thermosets and elastomers. For such applications, is important that the thermo-reversible features are reproducible after many reprocessing and healing cycles. Therefore, side reactions are undesirable. However, we have noticed irreversible changes in the mechanical properties of such materials when exposing them to temperatures around 150 °C. In this work, we study if these changes are due to the self-reaction of maleimide moieties that may take place at this rather low temperature. In order to do so, we prepared a furan-grafted polyketone crosslinked with the commonly used aromatic bismaleimide (1,1'-(methylenedi-4,1-phenylene)bismaleimide), and exposed it to isothermal treatments at 150 °C. The changes in the chemistry and thermo-mechanical properties were mainly studied by infrared spectroscopy, 1H-NMR, and rheology. Our results indicate that maleimide self-reaction does take place in the studied polymer system. This finding comes along with limitations over the reprocessing and self-healing procedures for furan/maleimide-based reversibly crosslinked polymers that present their softening (decrosslinking) point at relatively high temperatures. On the other hand, the side reaction can also be used to tune the properties of such polymer products through in situ thermal treatments. Here is the raw and processed data obtained by FTIR, NMR and rheology. Each excel file is clearly named in order to guide the reader.
DOI: 10.14278/rodare.816
title: Comprehensive Bonding Analysis of Tetravalent f-Element Complexes of the Type [M(salen)2]

description: Zip-File with the xyz-files of the optimized structures of the studied complexes. Further information can be found in the respective paper and supplementary information.
DOI: 10.14278/rodare.815
title: Comprehensive Bonding Analysis of Tetravalent f-Element Complexes of the Type [M(salen)2]

description: Zip-File with the xyz-files of the optimized structures of the studied complexes. Further information can be found in the respective paper and supplementary information.
DOI: 10.20351/29gd20030922
title: MFSTEP-1 Cruise, RV García del Cid

description: MFSTEP-1 Cruise (29GD20030922) carried out on the Research Vessel García del Cid in 2003
DOI: 10.20351/29gd20030910
title: CACO-2 Cruise, RV García del Cid

description: CACO-2 Cruise (29GD20030910) carried out on the Research Vessel García del Cid in 2003
DOI: 10.6084/m9.figshare.14074502
title: company-dataset

description: dataset
DOI: 10.6084/m9.figshare.14074502.v1
title: dataset

description: dataset
DOI: 10.5281/zenodo.4555513
title: Test

description: Test
DOI: 10.20351/29gd20031028
title: RECS-5 Cruise, RV García del Cid 

description: RECS-5 Cruise (29GD20031028) carried out on the Research Vessel García del Cid in 2003
DOI: 10.6084/m9.figshare.14074499
title: Questionnaire findings - Models of care for CML patients during the COVID-19 pandemic

description: Questionnaire results from our study:"Models of care for Chronic Myeloid Leukaemia (CML) patients during the COVID-19 pandemic in the United Kingdom (UK): changes in patient attitudes to remote consultations and future implications"
DOI: 10.5281/zenodo.4555514
title: bpmo-agile/dataset

description: bpmo-agile/dataset
DOI: 10.20351/29gd20030329
title: RECS-1 Cruise, RV García del Cid

description: RECS-1 Cruise (29GD20030329) carried out on the Research Vessel García del Cid in 2003
DOI: 10.20351/29gd20040329
title: RECS-2-6 Cruise, RV García del Cid

description: RECS-2-6 Cruise (29GD20040329) carried out on the Research Vessel García del Cid in 2004
DOI: 10.5967/tgz2-j461
title: Marginal Benefit and Cost Heterogeneity Data
DOI: 10.20351/29gd20040302
title: DINAPROFIT-1 Cruise, RV García del Cid


description: DINAPROFIT-1 Cruise (29GD20040302) carried out on the Research Vessel García del Cid in 2004
DOI: 10.6084/m9.figshare.14074547
title: Included articles PONE-D-20-39786.xlsx

description: Dataset used in PLOS One article ref. PONE-D-20-39786 entitled <i>'It's like being in a war with an invisible enemy’: A document analysis of bereavement due to COVID-19 in UK newspapers</i>
DOI: 10.6084/m9.figshare.14074547.v1
title: Included articles PONE-D-20-39786.xlsx

description: Dataset used in PLOS One article ref. PONE-D-20-39786 entitled <i>'It's like being in a war with an invisible enemy’: A document analysis of bereavement due to COVID-19 in UK newspapers</i>
DOI: 10.20351/29gd20040515
title: MEDGAZ Cruise, RV García del Cid

description: MEDGAZ Cruise (29GD20040515) carried out on the Research Vessel García del Cid in 2004
DOI: 10.15468/95d6xc
title: Out on a limb: novel morphology and position on appendages of two new genera and three new species of ectoparasitic isopods (Epicaridea: Dajidae) infesting isopod and decapod hosts

description: This dataset contains the digitized treatments in Plazi based on the original journal article Williams, Jason D., Boyko, Christopher B. (2021): Out on a limb: novel morphology and position on appendages of two new genera and three new species of ectoparasitic isopods (Epicaridea: Dajidae) infesting isopod and decapod hosts. Zoosystema 43 (4): 79-100, DOI: 10.5252/zoosystema2021v43a4
DOI: 10.20351/29gd20040623
title: CACO-3 Cruise, RV García del Cid

description: CACO-3 Cruise (29GD20040623) carried out on the Research Vessel García del Cid in 2004
DOI: 10.20351/29gd20040928
title: PRODELTA Cruise, RV García del Cid 

description: PRODELTA Cruise (29GD20040928) carried out on the Research Vessel García del Cid in 2004
DOI: 10.6084/m9.figshare.12662360
title: data_files_manuscript.zip

description: In biodiversity monitoring, large datasets are becoming more and more widely available and are increasingly used globally to estimate species trends and conservation status. these large-scale datasets challenge existing statistical analysis mlethods, many of which are not adapted to their size, incompltness and heterogeneity. The development of scalable methodsto impute missing data in incomplete large-scale monitoring datasets is crucial to balance sampling in time or space and thus better inform conservation policies. To address this, we developed a new method based on penalized Poisson models to impute and analyse incomplete monitoring data in a large-scale framework. The method allows parameterization of (a) space and time factors, (b) the main effects of predictor covariates, (c) space-time interactions. This new method benefits from robust statistical and computational capability in large-scale setting.
DOI: 10.6084/m9.figshare.12662360.v2
title: data_files_manuscript.zip

description: In biodiversity monitoring, large datasets are becoming more and more widely available and are increasingly used globally to estimate species trends and conservation status. these large-scale datasets challenge existing statistical analysis mlethods, many of which are not adapted to their size, incompltness and heterogeneity. The development of scalable methodsto impute missing data in incomplete large-scale monitoring datasets is crucial to balance sampling in time or space and thus better inform conservation policies. To address this, we developed a new method based on penalized Poisson models to impute and analyse incomplete monitoring data in a large-scale framework. The method allows parameterization of (a) space and time factors, (b) the main effects of predictor covariates, (c) space-time interactions. This new method benefits from robust statistical and computational capability in large-scale setting.
DOI: 10.6084/m9.figshare.12662360.v1
title: data_files_manuscript.zip

description: In biodiversity monitoring, large datasets are becoming more and more widely available and are increasingly used globally to estimate species trends and conservation status. these large-scale datasets challenge existing statistical analysis mlethods, many of which are not adapted to their size, incompltness and heterogeneity. The development of scalable methodsto impute missing data in incomplete large-scale monitoring datasets is crucial to balance sampling in time or space and thus better inform conservation policies. To address this, we developed a new method based on penalized Poisson models to impute and analyse incomplete monitoring data in a large-scale framework. The method allows parameterization of (a) space and time factors, (b) the main effects of predictor covariates, (c) space-time interactions. This new method benefits from robust statistical and computational capability in large-scale setting.
DOI: 10.20351/29gd20040325
title: RECS-6 Cruise, RV García del Cid

description: RECS-6 Cruise (29GD20040325) carried out on the Research Vessel García del Cid in 2004
DOI: 10.21227/tq8p-mt45
title: Test0

description: WIP.
DOI: 10.6084/m9.figshare.14074559
title: data.txt

description: Spatial location of 154 populations of sticklebacks in Poland with plate number and 10 year antecedent air temperatures
DOI: 10.5281/zenodo.4555551
title: Datasets for the Carpentry-style RNA-seq lesson

description: <strong>Lesson files</strong> File descriptions:<br> - <strong>counts.txt</strong>: a dataframe of the sample raw counts. It is a tab separated file therefore data are in tabulated separated columns.<br> - <strong>experimental_design_modified.txt</strong> dataframe indicates the correspondence between samples and experimental conditions (e.g. control, treated). <br> - <strong>differential_genes.tsv</strong> dataframe contains the result of the DESeq2 analysis. The counts.txt file was obtained by running the `v0.1.1` version of a RNA-Seq bioinformatic pipeline on the mRNA-Seq sequencing files from Vogel et al. (2016): https://www.ebi.ac.uk/ena/data/view/PRJEB13938. Please read the original study (Vogel et al. 2016): https://nph.onlinelibrary.wiley.com/doi/full/10.1111/nph.14036 ==== <strong>Project files</strong> The NASA GeneLab experiment GLDS-38 performed transcriptomics and proteomics of Arabidopsis seedlings in microgravity by sending seedlings to the International Space Station (ISS). The raw counts, scaled counts and sample to conditions files are available in the ZIP archive
DOI: 10.4121/uuid:779b9dfd-b0ff-4531-8833-aaa9c0cf6b5a.v2
title: STORM tropical cyclone wind speed return periods

description: Datasets containing tropical cyclone maximum wind speed (in m/s) return periods, generated using the STORM datasets (see https://www.nature.com/articles/s41597-020-0381-2). Return periods were empirically calculated using Weibull's plotting formula. The STORM_FIXED_RETURN_PERIOD dataset contains maximum wind speeds for a fixed set of return periods at 10 km resolution in every ocean basin. The STORM_FIXED_WIND_SPEED dataset contains return periods for a fixed set of maximum wind speeds at 10 km resolution in every ocean basin. The STORM_CITIES dataset contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from a selection of 18 coastal cities. The STORM_ISLANDS contains return periods at fixed wind speeds and wind speeds at fixed return periods (on two seperate sheets), occurring within 100 km from the capital city of an island. We included the Small Island Developing States and a set of other islands.
DOI: 10.20351/29gd20040913
title: EFLUBIO-3 Cruise, RV García del Cid

description: EFLUBIO-3 Cruise (29GD20040913) carried out on the Research Vessel García del Cid in 2004
DOI: 10.5519/qd.ugkbdhxp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.4550529
title: In-Plane Monolithic Integration of Scaled III-V Photonic Devices

description: This data supports the findings of the study "In-Plane Monolithic Integration of Scaled III-V Photonic Devices", DOI: https://doi.org/10.3390/app11041887, published in the Applied Sciences journal "Hybrid and Heterogeneous Integration on Photonic Circuits: New Opportunities for Multifunctional Photonic Platforms". The material here represents the raw data as measured in the experiments without further processing, which was subsequently performed using OriginPro Graphing & Analysis software.
DOI: 10.5281/zenodo.4550528
title: In-Plane Monolithic Integration of Scaled III-V Photonic Devices

description: This data supports the findings of the study "In-Plane Monolithic Integration of Scaled III-V Photonic Devices", DOI: https://doi.org/10.3390/app11041887, published in the Applied Sciences journal "Hybrid and Heterogeneous Integration on Photonic Circuits: New Opportunities for Multifunctional Photonic Platforms". The material here represents the raw data as measured in the experiments without further processing, which was subsequently performed using OriginPro Graphing & Analysis software.
DOI: 10.5281/zenodo.4459316
title: Inertial impact test of a pre-notched PMMA sample, raw dataset: Raw images, raw outputs and elements for post-processing

description: <pre>This dataset contains the data obtained from an inertial impact test of a pre-notched PMMA sample. Both the raw data from the experiment and some post-processed data are provided. <strong>File contents:</strong> - Videos: folder that contains videos resulting from the application of the presented methodology to an inertial impact test. It contains a video of the temporally smoothed displacement fields, the resulting strain fields and the resulting strain-rate fields. - Test: folder that contains the images from the inertial impact test + the reference image used in the presented methodology. Note that the images are numbered accordingly to their corresponding sensor number !! - Static: folder that contains images taken with a static sample. Two sets are provided: - one obtained from the same mirror face permutation: this series was taken on a previous sample. A slight rigid-body translation/rotation may exist between this static set and the experimental one. - one obtained from a random mirror face permutation: this series was taken prior to the test in the exact same position - crack.vtk: mesh used for the dic procedure for the test. The file is compatible with paraview and gmsh. - Calib_#.csv: file that contains the calibrated model corresponding to the permutation #. It is organized as follows: The first column contains the zernike polynomials parameter name (eg '00','-11' etc). The following columns contain the parameters values identifed for each sensor. Hence for instance the 3rd column contains the distortion parameters for the sensor 2 (3rd column minus 1st column); Note that: - Calib_2 corresponds to the experimental set and the static set named "good permutation". - Calib_1 corresponds to the static set named "bad permutation". - Connectivity.csv: file that contains the table of connectivity for the mesh used (crack.vtk) for the test. One row corresponds to one element, it contains the element's node numbers. - Mesh_nodes.csv: file that contains the experimental mesh nodes. The first column contains the X coordinates and the second the Y ones. - U#.csv: file that contains the nodal raw displacement in the # direction (ie, after the deconvolution of the distortions). One column corresponds to a time step. -U_VTK: folder that contains the vtk files associated to the raw displacement fields obtained during the experiment. -timeline.csv: file that contains the timeline of the experiment. </pre>