cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j04q7sp2
title: CIL:13448, Saccharomyces cerevisiae S288c. In Cell Image Library

description: Intracellular localization of GFP-GOLPH3 in S. cerevisiae frq1-1 temperature-conditional strain grown at restrictive temperature of 37C. In frq1-1 mutant after a 30 minute incubation at the restrictive temperature, GFP-GOLPH3 loses punctate localization and is mostly in the cytosol. The Golgi-localized PtdIns 4-kinase in yeast is composed of the Pik1 catalytic subunit and a myristoylated calcium-binding protein, Frq1. Vps74 is essential to maintain glycosyltransferases in the Golgi and results in this study reveal a previously unrecognized PtdIns4P-binding site in Vps74/GOLPH3 family proteins and link Pik1 signaling to retention of Golgi-resident proteins. Cells grown in liquid medium were mounted in growth medium and 3D image stacks were collected at 0.4-µm z increments on a DeltaVision workstation (Applied Precision) based on an inverted microscope (IX-70; Olympus) using a 100× NA 1.4 oil immersion lens. Images were captured at 23C with a 12-bit CCD camera (CoolSnap HQ; Photometrics) and deconvolved using the iterative-constrained algorithm (Agard, 1984) and the measured point spread function. One image from the approximate center of z stack is shown in Fig1A GOLPH3/frq1-1 37C panel in J Cell Biol. 187: 967-975. 2009. Images in Fig 1A include CIL#s 13439, 13440, 13441, 13442, 13443, 13444, 13445, 13446, 13447, 13448, 13458, 13459.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: constrained iterative deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0fj2g2f
title: CIL:38663, Rattus rattus, glandular epithelial cell, milk secreting cell, mammary alveolar cell. In Cell Image Library

description: Tissue was processed for immunoelectron microscopy using a modified Tokuyasu method. Briefly, minced tissue was fixed in 4% paraformaldehyde containing 5% sucrose and 100 mM HEPES and infiltrated with PBS containing 2.1 M sucrose over 10 h, with repeated solution changes. Fixed tissue was transferred to an aluminum cryosectioning stub (Ted Pella, Inc., Redding, CA) and immediately frozen in liquid nitrogen. Semithin (90 nm) cryosections were cut at -110C with an UltraCut UCT/FCS cryomicrotome (Leica), using a diamond knife (Diatome) and transferred to a Formvar-coated, carbon-coated, glow-discharged 100-mesh copper-rhodium electron microscopy grid. Following blocking of nonspecific antibody binding sites with 10% calf serum in PBS, the sections were labeled by sequential incubation with antibodies to cation-dependent mannose-6-phosphate receptor (rabbit) and TGN38 (mouse monoclonal 2F7) and colloidal gold-conjugated secondary antibodies (10 nm anti-rabbit, 15 nm anti-mouse; Ted Pella Inc., Redding, CA) and then negatively stained and embedded with 1% uranyl acetate, 1% methylcellulose in distilled water. Samples were viewed in a Philips CM10 electron microscope, and images were collected digitally. Magnification 21,000 X. See Ladinsky and Howell (2007) for more information on methods used.
description: Preparation: cryostat-sectioned tissue; formaldehyde fixed tissue; embedded tissue; methylcellulose embedded
Relation to intact cell: sectioned tissue
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM); illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: differences in adsorption or binding of stain; distribution of a specific protein
Visualization methods: gold; uranyl salt; primary antibody plus labeled secondary antibody
Processing history: unprocessed raw data
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Immunoelectron microscopy of mammary gland tissue from lactating rats investigating potential structural interactions between mature lipid droplets and elements of the trans-Golgi network, identified by TGN38 (a transmembrane trans-Golgi protein; larger gold particles) and cation-dependent mannose-6-phosphate receptor (an integral membrane protein that localizes to the trans-Golgi
 reticulum, endosomes, and the plasma membrane; smaller gold particles) staining. Note that trans‚ÄêGolgi cisternae in lactating mammary cells contain large amounts of casein and other milk proteins and are grossly expanded due to the osmolarity of the secreted fluid.
DOI: 10.6075/j0nz86cf
title: CIL:13451, Saccharomyces cerevisiae S288c. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: constrained iterative deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
description: Intracellular localization of GFP-Vps74 W88A, R97A mutant in BY4742 vps74∆. GFP-Vps74 is localized to Golgi compartments and the cytosol (CIL# 13449) but loses localization when two amino acids are mutated in the sulfate-binding pocket. This study demonstrates that the sulfate-binding pocket of Vps74 and GOLPH3 mediates PtdIns4P-binding and is essential for function. Cells grown in liquid medium were mounted in growth medium and 3D image stacks were collected at 0.4-µm z increments on a DeltaVision workstation (Applied Precision) based on an inverted microscope (IX-70; Olympus) using a 100× NA 1.4 oil immersion lens. Images were captured at 23C with a 12-bit CCD camera (CoolSnap HQ; Photometrics) and deconvolved using the iterative-constrained algorithm (Agard, 1984) and the measured point spread function. One image from the approximate center of z stack is shown in Fig4A W88A R97A/vps74∆ panel in J Cell Biol. 187: 967-975. 2009. Images in Fig 4A include CIL#s 13449, 13451, 13453, 13455, 13456, 13457, 24816, 24817, 24818, 24819, 24820, 24821.
DOI: 10.6075/j0xk8d88
title: CIL:13449, Saccharomyces cerevisiae S288c. In Cell Image Library

description: Intracellular localization of GFP-Vps74 in BY4742 vps74∆. GFP-Vps74 is localized to Golgi compartments and the cytosol. Control image for images showing ectopic expression of GFP-Vps74 with mutations in the sulfate-binding pocket (CIL#s 13451, 13453). This study demonstrates that the sulfate-binding pocket of Vps74 and GOLPH3 mediates PtdIns4P-binding and is essential for function. Cells grown in liquid medium were mounted in growth medium and 3D image stacks were collected at 0.4-µm z increments on a DeltaVision workstation (Applied Precision) based on an inverted microscope (IX-70; Olympus) using a 100× NA 1.4 oil immersion lens. Images were captured at 23C with a 12-bit CCD camera (CoolSnap HQ; Photometrics) and deconvolved using the iterative-constrained algorithm (Agard, 1984) and the measured point spread function. One image from the approximate center of z stack is shown in Fig4A wild-type/vps74∆ panel in J Cell Biol. 187: 967-975. 2009. Images in Fig 4A include CIL#s 13449, 13451, 13453, 13455, 13456, 13457, 24816, 24817, 24818, 24819, 24820, 24821.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: constrained iterative deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
DOI: 10.5281/zenodo.16572484
title: Raw data for the project 'Synthesis of Hypercrosslinked Polymers Using Coconut Oil as Renewable, Bio-Based Solvent'

description: We report a sustainable approach to the synthesis of hypercrosslinked polymers by replacing conventional chlorinated solvents with renewable bio-based oils. Hypercrosslinked polymers are widely used porous materials in both academic and industrial settings, yet their synthesis remains heavily reliant on chlorinated solvents subject to growing regulatory restrictions due to their environmental and health hazards. Here, we identify coconut oil as an effective alternative solvent for the synthesis of high surface area hypercrosslinked polymers (>650 m2/g) with excellent thermal and chemical stability. We explore the role of fatty acid composition in the oil, finding that saturated acid content correlates to network porosity. By demonstrating that benign, renewable substrates can replace hazardous solvents, this work provides a timely and practical step toward greener polymer production methods.
DOI: 10.5281/zenodo.16572485
title: Raw data for the project 'Synthesis of Hypercrosslinked Polymers Using Coconut Oil as Renewable, Bio-Based Solvent'

description: We report a sustainable approach to the synthesis of hypercrosslinked polymers by replacing conventional chlorinated solvents with renewable bio-based oils. Hypercrosslinked polymers are widely used porous materials in both academic and industrial settings, yet their synthesis remains heavily reliant on chlorinated solvents subject to growing regulatory restrictions due to their environmental and health hazards. Here, we identify coconut oil as an effective alternative solvent for the synthesis of high surface area hypercrosslinked polymers (>650 m2/g) with excellent thermal and chemical stability. We explore the role of fatty acid composition in the oil, finding that saturated acid content correlates to network porosity. By demonstrating that benign, renewable substrates can replace hazardous solvents, this work provides a timely and practical step toward greener polymer production methods.
DOI: 10.15468/dl.4pzsd4
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Swertia obtusa"
 ]
}

 The dataset includes 27 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009463-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tc2k4r
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.28_1",
 "TaxonKey is Reynoutria japonica"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009464-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dksmsq
title: Occurrence Download

description: A dataset listing the 2827 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is FRA.6.8_1",
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 2827 records were derived from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009454-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.svgysv
title: Occurrence Download

description: A dataset containing 46405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer pictum, Betula platyphylla, Juglans mandshurica, Populus davidiana, Fraxinus mandshurica, Quercus mongolica, Ulmus davidiana, Castanopsis fissa, Machilus chinensis, Schima superba, Triadica cochinchinensis, Cryptocarya chinensis, Gironniera subaequalis, Psychotria asiatica, Pterospermum heterophyllum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "OccurrenceStatus is Present",
 "EventDate is greater than or equal to 1991-01-01",
 "EventDate is less than or equal to 2025-10-31",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 46405 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009460-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jr5dfh
title: Occurrence Download

description: A dataset containing 1157834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "GbifRegion is Africa",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1157834 records from 542 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009436-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8dgfve
title: Occurrence Download

description: A dataset containing 4822511 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is FRA.12_1"
 ]
}

 The dataset includes 4822511 records from 1474 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125014-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dywfut
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004087-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugo8su
title: Occurrence Download

description: A dataset containing 90624107 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Australia"
 ]
}

 The dataset includes 90624107 records from 2165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029717-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id349954.1
title: StrainInfo SI-ID 349954.1

description: StrainInfo dataset 349954 about a strain of Gonium pectorale. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350097.1
title: StrainInfo SI-ID 350097.1

description: StrainInfo dataset 350097 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350098.1
title: StrainInfo SI-ID 350098.1

description: StrainInfo dataset 350098 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350099.1
title: StrainInfo SI-ID 350099.1

description: StrainInfo dataset 350099 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.koooyg
title: Occurrence Download

description: A dataset containing 17698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brassica rapa L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17698 records from 275 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005863-170627171947987/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id350187.1
title: StrainInfo SI-ID 350187.1

description: StrainInfo dataset 350187 about a strain of Paramecium triaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350188.1
title: StrainInfo SI-ID 350188.1

description: StrainInfo dataset 350188 about a strain of Paramecium pentaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350189.1
title: StrainInfo SI-ID 350189.1

description: StrainInfo dataset 350189 about a strain of Paramecium septaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350190.1
title: StrainInfo SI-ID 350190.1

description: StrainInfo dataset 350190 about a strain of Paramecium biaurelia. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id349955.1
title: StrainInfo SI-ID 349955.1

description: StrainInfo dataset 349955 about a strain of Gonium pectorale. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id349956.1
title: StrainInfo SI-ID 349956.1

description: StrainInfo dataset 349956 about a strain of Gonium pectorale. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id349957.1
title: StrainInfo SI-ID 349957.1

description: StrainInfo dataset 349957 about a strain of Gonium pectorale. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350100.1
title: StrainInfo SI-ID 350100.1

description: StrainInfo dataset 350100 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350101.1
title: StrainInfo SI-ID 350101.1

description: StrainInfo dataset 350101 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350102.1
title: StrainInfo SI-ID 350102.1

description: StrainInfo dataset 350102 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350103.1
title: StrainInfo SI-ID 350103.1

description: StrainInfo dataset 350103 about a strain of Chlorella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350191.1
title: StrainInfo SI-ID 350191.1

description: StrainInfo dataset 350191 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350192.1
title: StrainInfo SI-ID 350192.1

description: StrainInfo dataset 350192 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350193.1
title: StrainInfo SI-ID 350193.1

description: StrainInfo dataset 350193 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350104.1
title: StrainInfo SI-ID 350104.1

description: StrainInfo dataset 350104 about a strain of Chlamydomonas reinhardtii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350105.1
title: StrainInfo SI-ID 350105.1

description: StrainInfo dataset 350105 about a strain of Chlamydomonas reinhardtii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350106.1
title: StrainInfo SI-ID 350106.1

description: StrainInfo dataset 350106 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350107.1
title: StrainInfo SI-ID 350107.1

description: StrainInfo dataset 350107 about a strain of Tetrahymena borealis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350194.1
title: StrainInfo SI-ID 350194.1

description: StrainInfo dataset 350194 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350195.1
title: StrainInfo SI-ID 350195.1

description: StrainInfo dataset 350195 about a strain of Naegleria fowleri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id350196.1
title: StrainInfo SI-ID 350196.1

description: StrainInfo dataset 350196 about a strain of Naegleria lovaniensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.