cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/esp-795-g9l
title: Gouania polygama (Jacq.) Urb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ba1-r6r-km2
title: Lippia alba (Mill.) N.E.Br. ex Britton & P.Wilson

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/re5-tqw-kpb
title: Gouania polygama (Jacq.) Urb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/3cn-gse-2jx
title: Microdesmia arborea (Seem.) Sothers & Prance

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/mp3-fzg-b9h
title: Hirtella racemosa Lam.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q9w-h48-f9t
title: Lantana hirta Graham

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dym-jmx-p6h
title: Hirtella triandra Sw.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/r7w-ggc-6zw
title: Limnocharis flava (L.) Buchenau

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nqg-h9f-bd3
title: Hesperomeles obtusifolia (Pers.) Lindl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1xb-xnw-h1j
title: Hirtella tubiflora Cuatrec.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/5fg-h11-sdt
title: Lachemilla venusta (Cham. & Schltdl.) Rydb.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/9b2-5bc-1j4
title: Elaphoglossum Schott ex J. Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1zy-z8g-383
title: Fleischmannia Sch. Bip.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/m8t-13z-6s4
title: Diplazium prominulum Maxon

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/ct8-hkd-qdz
title: Dennstaedtiaceae Lotsy

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xxs-6cf-rbl
title: Diplazium Sw.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/t0h-m1m-kzg
title: Dennstaedtiaceae Lotsy

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/x50-03y-9tf
title: Lacunaria crenata subsp. crenata

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/2en-g2a-8da
title: Iresine latifolia (M. Martens & Galeotti) Benth. & Hook. fil.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0z1-9j4-5f3
title: Hebanthe grandiflora (Hook.) Borsch & Pedersen

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/f8d-pfp-6wb
title: Cyathea Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/9pv-dve-wl7
title: Cyathea Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/e93-5s8-j4n
title: Hyparrhenia rufa (Nees) Stapf

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15856069
title: seqfetch_out_20250710.txt.gz
DOI: 10.5281/zenodo.15856070
title: seqfetch_out_20250710.txt.gz
DOI: 10.3535/0jn-ehw-krp
title: Lasiacis (Griseb.) Hitchc.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.hfzksw
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melinis minutiflora",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 500",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 75 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000156-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/n5l-409-n73
title: Elaphoglossum resinosum A. Rojas

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vg6-l9y-5n4
title: Gleichenella pectinata (Willd.) Ching

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.m5j6bh
title: Occurrence Download

description: A dataset containing 550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Equatorial Guinea",
 "DatasetKey is The vascular plants collection (P) at the Herbarium of the Muséum national d'Histoire Naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 550 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000157-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/ef3-4nr-4s9
title: Gleicheniaceae (R. Br.) C. Presl

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q47-85j-d5n
title: Cyathea Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5281/zenodo.15843672
title: Data for arXiv:2503.07751: "Heat-to-motion conversion for quantum active matter"

description: arXiv:2503.07751(2025)

We introduce a  model of an active quantum particle and discuss its properties. The  particle has a set of internal states  that mediate exchanges of heat with external reservoirs. Heat is then converted into motion by means of a spin-orbit term that couples internal and translational degrees of freedom. The quantum features of the active particle manifest both in the motion and in the heat-to-motion conversion. Furthermore, the stochastic nature of heat exchanges impacts the motion of the active particle and fluctuations can be orders of magnitude larger than the average values. The combination of spin-orbit interaction under nonequilibrium driving may bring active matter into the realm of cold atomic gases where our proposal can be implemented.
DOI: 10.5281/zenodo.15843673
title: Data for arXiv:2503.07751: "Heat-to-motion conversion for quantum active matter"

description: arXiv:2503.07751(2025)

We introduce a  model of an active quantum particle and discuss its properties. The  particle has a set of internal states  that mediate exchanges of heat with external reservoirs. Heat is then converted into motion by means of a spin-orbit term that couples internal and translational degrees of freedom. The quantum features of the active particle manifest both in the motion and in the heat-to-motion conversion. Furthermore, the stochastic nature of heat exchanges impacts the motion of the active particle and fluctuations can be orders of magnitude larger than the average values. The combination of spin-orbit interaction under nonequilibrium driving may bring active matter into the realm of cold atomic gases where our proposal can be implemented.
DOI: 10.15468/dl.fwgx4r
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Chrysanthemum rhombifolium"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000158-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/m6m-chv-3ng
title: Cyathea Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/q2n-crh-540
title: Cyathea Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/f6b-sl0-s5g
title: Diplazium Sw.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.3ztcfa
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aethionema speciosum"
 ]
}

 The dataset includes 155 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000159-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vpu4nr
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polydesmus subulifer"
 ]
}

 The dataset includes 100 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000160-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bj5-b2v-0h6
title: Iresine angustifolia Euphrasén

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/jxp-nyv-0yq
title: Iresine angustifolia Euphrasén

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/16k-njv-tba
title: Eschweilera Mart. ex DC.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/zjq-4xe-2ce
title: Fleischmannia Sch. Bip.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.hcnpcu
title: Occurrence Download

description: A dataset containing 9360195 species occurrences available in GBIF matching the query:
{
 "InstitutionKey" : [
 "is 0e919a55-08d3-4bd2-aec1-200858fafd92"
 ]
}

 The dataset includes 9360195 records from 591 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000147-250710112747441/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azj58a
title: Occurrence Download

description: A dataset containing 132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cicerbita macrophylla",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 132 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040726-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8z649e
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Fiji",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040729-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.apxynn
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Bosnia and Herzegovina",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040728-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12568192
title: BOS Kemdikbud
DOI: 10.15468/dl.xd5tsp
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040727-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2x48f2
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (BRA.13.363_2, BRA.13.489_2, BRA.13.520_2, BRA.13.97_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Coleoptera, Mammalia, Reptilia, Reptilia, Reptilia, Reptilia, Amphibia, Termitidae)"
 ]
}

 The dataset includes 231 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040731-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98qhdf
title: Occurrence Download

description: A dataset containing 304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 304 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040730-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16414347
title: Selection of reference genes for RT-qPCR analysis in Ceratina Calcarata Robertson (Hymenoptera: Apidae) under different developmental stages and landscapes

description: This dataset contains raw cycle threshold (Ct) values obtained from qPCR analysis of candidate reference genes in small carpenter bee (Ceratina calcarata). The data were generated to evaluate the stability of reference candidate genes for gene expression normalization. Samples include different developmental stages and collection sites. The dataset supports reference gene validation studies in C. calcarata.
DOI: 10.5281/zenodo.16414346
title: Selection of reference genes for RT-qPCR analysis in Ceratina Calcarata Robertson (Hymenoptera: Apidae) under different developmental stages and landscapes

description: This dataset contains raw cycle threshold (Ct) values obtained from qPCR analysis of candidate reference genes in small carpenter bee (Ceratina calcarata). The data were generated to evaluate the stability of reference candidate genes for gene expression normalization. Samples include different developmental stages and collection sites. The dataset supports reference gene validation studies in C. calcarata.
DOI: 10.15468/dl.vxb684
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphilophus xiloaensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040732-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uv6rvx
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040734-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.myte7z
title: Occurrence Download

description: A dataset containing 2552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum sparsiflorum"
 ]
}

 The dataset includes 2552 records from 134 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040733-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.npjr9c
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhynchosia ferruginea"
 ]
}

 The dataset includes 71 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040735-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3vrsgh
title: Occurrence Download

description: A dataset containing 1830 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Doronicum orientale",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1830 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040736-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ej93x6
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Solenopsis geminata",
 "Country is Kiribati",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040737-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqae5s
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thalictrum finetii"
 ]
}

 The dataset includes 297 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040739-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3772b8
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Austrocylindropuntia cylindrica",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 91 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040738-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3u2hd
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Melitaea parthenoides"
 ]
}

 The dataset includes 239 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040740-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pypb8r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Chad",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040741-250717081556266/datasets/export for details.
DOI: 10.15468/dl.tjeg47
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zinnia elegans",
 "Country is Croatia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040742-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wts8t3
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Parotocinclus planicauda)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 8 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040743-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15238723
title: Giant endogenous viral elements in the genome of the model protist Euglena gracilis reveal past interactions with giant viruses

description: This is the data availability repository for the paper.

It contains the supplementary dataset, supplementary figures and the BAM file used for methylation calling.

For generating the BAM file, the nanopore .pod5 files were basecalled and mapped to the Euglena genome assembly on NCBI. For detailed methods, see methods section in the paper. 

Supplementary figure information:

S1: Histogram of GC% of GEVEs (blue) with mean at 32% and a 200 Kbp window of Euglena gracilis (red) with mean at 47%. P-value < 0.005

S2: BLAST dotplot of CP83_f against itself showing duplications in the central 80 Kbp region

S3: All vs all AAI matrix of Euglena GEVE, Rhizophagus GEVE, Elysia marginata viral region, and isolates in the order of Asfuvirales

S4: Heatmap showing screening of 95 publicly available transcriptomes against all Euglena GEVE proteins

S5: Distribution of hits against recombinases expressed in the transcriptome of the Euglena GEVEs across the Euglena genome

S6: Mapped reads from 48 freshwater metagenomes across CP92_2 GEVE with 100 kb flanking region

 

Supplementary Dataset information:

Dataset 1: eggnog_annotations

Dataset 2: HHPred_predictions