cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cattcn
title: Occurrence Download

description: A dataset containing 1740450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1740450 records from 1288 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010989-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28821035
title: Plasmid_in_B_thuringiensis

description: Name and list of plasmids found in LBA001
DOI: 10.6084/m9.figshare.28821035.v1
title: Plasmid_in_B_thuringiensis

description: Name and list of plasmids found in LBA001
DOI: 10.15468/dl.ccpwk4
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Polygala baikiei Chodat"
 ]
}

 The dataset includes 265 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008945-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwnb9z
title: Occurrence Download

description: A dataset containing 25932 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "TaxonKey is Fabaceae",
 "HasGeospatialIssue is false"
 ]
 },
 {
 "and" : [
 "Country is one of (Mozambique)",
 "TaxonKey is one of (Fabaceae)"
 ]
 }
 ]
}

 The dataset includes 25932 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008947-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d66971x2
title: ZEBRA GOES-E WSR-88D N42 N43 NRL P-3 Track Composite Imagery. Version 1.0

description: This dataset contains composite images of GOES, WSR-88D, and the flight tracks from NOAA-42, NOAA-43, and the NRL P-3 for storm-specific areas within the RAINEX area of interest. The images were produced during the RAINEX field phase for the flights on September 9, 20, 22, and 23 only.
DOI: 10.15468/dl.pd4bks
title: Occurrence Download

description: A dataset containing 3339996265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Living Specimen, Specimen, Material citation, Material sample, Human Observation, Machine Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3339996265 records from 65389 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035687-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuurkx
title: Occurrence Download

description: A dataset containing 53650 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is GfI-Fischartenatlas"
 ]
}

 The dataset includes 53650 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035794-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yj7ub4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jasminum sambac",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035818-250920141307145/datasets/export for details.
DOI: 10.15468/dl.wx9a3t
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is DEU.11_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Cenchrus setaceus",
 "Year 2019-2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035815-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d62j696r
title: T-REX Chat Logs. Version 1.0

description: This dataset contains Chat Room log files generated during the T-REX field project. The T-REX Chat Room logs are managed by the Earth Observing Laboratory (EOL) at the National Center for Atmospheric Research (NCAR). The Chat logs are maintained as official, permanent project records. These Chat logs were reviewed by EOL and edited, if necessary and at EOL's discretion, to maintain the most accurate record for the project. EOL and UCAR disclaim all liability for the content or edited content of the Chat logs.
DOI: 10.15468/dl.3epbjw
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence and distribution of invertebrates in temporary wetlands of the Pangani River Basin, northeastern Tanzania"
 ]
}

 The dataset includes 126 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035816-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzxjke
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jasminum sambac",
 "Country is Niue",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035820-250920141307145/datasets/export for details.
DOI: 10.5065/d6xs5sq2
title: Mobile ISS Surface Met Imagery. Version 1.0

description: This data set contains surface meteorology imagery from the Earth Observing Laboratory (EOL) Mobile Integrated Sounding System (MISS) sites during T-REX. The MISS is a self contained meteorological observing system contained within a vehicle. This data set contains real-time imagery files taken from the T-REX Field Catalog.
DOI: 10.15468/dl.mm9y8q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Jasminum sambac",
 "Country is Palau",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035821-250920141307145/datasets/export for details.
DOI: 10.15468/dl.fspdye
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sorbus leighensis",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Material sample)"
 ]
 }
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than or equal to 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035824-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17241148
title: ISCIII HPC Course – Practice 07: Hands-on Scripting and Parallelization

description: This dataset contains the supplementary materials for Practice 07: Hands-on Scripting and Parallelization of the HPC introductory course. It includes:





Example Slurm batch scripts (sbatch files) used in the exercises.




Input data required to run the practice workflows.




Supporting resources for exploring scripting, job arrays, OpenMP, and MPI parallelization.



These files are intended for training and teaching purposes, allowing students to reproduce the examples and consolidate their understanding of job scheduling and parallelization strategies in HPC environments.
DOI: 10.5281/zenodo.17241149
title: ISCIII HPC Course – Practice 07: Hands-on Scripting and Parallelization

description: This dataset contains the supplementary materials for Practice 07: Hands-on Scripting and Parallelization of the HPC introductory course. It includes:





Example Slurm batch scripts (sbatch files) used in the exercises.




Input data required to run the practice workflows.




Supporting resources for exploring scripting, job arrays, OpenMP, and MPI parallelization.



These files are intended for training and teaching purposes, allowing students to reproduce the examples and consolidate their understanding of job scheduling and parallelization strategies in HPC environments.
DOI: 10.5065/d6t151zk
title: ISS MAPR Site Surface Met Imagery. Version 1.0

description: This data set contains surface meteorology imagery from the Integrated Sounding System (ISS) Multiple Antenna Profiler Radar (MAPR) sites during T-REX. MAPR is an advanced wind profiler radar developed to make rapid wind measurements of the boundary layer. The radar's antenna is divided into 4 vertically pointing sub-arrays for reception, and uses Spaced Antenna techniques to measure wind. As the atmosphere moves over the radar, the motion of the atmospheric echoes is tracked over the receivers to make a wind measurement. This data set contains real-time imagery files taken from the T-REX Field Catalog.
DOI: 10.15468/dl.hhxpyk
title: Occurrence Download

description: A dataset containing 861162 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Pakistan"
 ]
}

 The dataset includes 861162 records from 1007 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035778-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnak92
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Material citation",
 "Country is one of (Honduras, Guatemala)",
 "TaxonKey is Artibeus"
 ]
}

 The dataset includes 24 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035822-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6p8496t
title: ISS Surface Met Imagery. Version 1.0

description: This data set contains surface meteorology imagery from the Earth Observing Laboratory (EOL) Integrated Sounding System (ISS) sites during T-REX. The ISS is a self contained meteorological observing system consisting of a wind profiler radar, radiosonde sounding system, a 10m meteorological tower, solar radiation and other sensors. This data set contains real-time imagery files taken from the T-REX Field Catalog.
DOI: 10.15468/dl.rv53qs
title: Occurrence Download

description: A dataset containing 2405 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Specimen)",
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Quercus ilex"
 ]
}

 The dataset includes 2405 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035826-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6jh3jhj
title: NSF/NCAR C-130 Flight HRT Data (MSS) Data. Version 1.0

description: This dataset contains the HRT data from the NSF/NCAR C-130 flights during MILAGRO.
DOI: 10.34740/kaggle/dsv/13225047
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.6084/m9.figshare.30010978.v1
title: <b>Contrasting</b><b> genomic trajectories of </b><b><i>Bartonellaceae</i></b><b> symbionts of planthoppers</b>

description: Symbioses with microorganisms have shaped the nutritional biology and evolution of many insects. For example, several ant clades have adapted to nutrient-poor diets through symbiosis with a specific clade of bacteria in the family <i>Bartonellaceae</i> (Hyphomicrobiales), notorious for also including virulent vertebrate pathogens. Here we show that <i>Bartonellaceae</i> phylogenetically placed within the clade that has only encompassed ant symbionts to date – <i>Candidatus</i> genus Tokpelaia – have established as symbionts in four different clades of planthoppers (Insecta: Hemiptera: Fulgoromorpha). Genome size and contents indicate different levels of integration of these strains into the planthopper host biology and their diverse roles. Symbionts infecting one of the clades have some of the largest genomes among <i>Bartonellaceae</i>, at ca. 2 Mb, two others are under 700 kb, and the fourth is reduced to barely 158 kb. The planthopper-associated <i>Tokpelaia </i>strains with larger genomes, similarly to ant symbionts, encode multiple amino acid and vitamin biosynthesis genes, complementing the degraded nutritional capabilities of their hosts’ ancient heritable endosymbionts. Strikingly, the smallest <i>Tokpelaia </i>genome lacks any genes linked to essential amino acid biosynthesis, in contrast to all other known insect-associated bacteria with genomes of comparable size. We identified a single vitamin biosynthesis gene and iron-sulfur cluster assembly genes as its only putative contributions to the host biology. Our results broaden the host spectrum of non-pathogenic <i>Bartonellaceae</i>, indicating that they have contributed to nutrition and symbiotic consortium function in diverse diet-restricted host clades. They also highlight an unexpectedly broad range of evolutionary outcomes for this important bacterial group.
DOI: 10.15468/dl.sy7wdc
title: Occurrence Download

description: A dataset containing 3297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Year is greater than or equal to 1980",
 "TaxonKey is Magnolia acuminata"
 ]
}

 The dataset includes 3297 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035828-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6dv1h6j
title: NSF/NCAR C-130 Flight LRT Data (MSS) Data. Version 1.0

description: This dataset contains the LRT data from the NSF/NCAR C-130 flights during MILAGRO.
DOI: 10.5065/d6930rhk
title: NSF/NCAR C-130 Forward-Facing Digital Camera Images (MSS). Version 1.0

description: This dataset contains images from a forward facing cockpit camera on the flights of the NSF/NCAR C-130 during MILAGRO. See the companion dataset for movies compiled from the images.
DOI: 10.34740/kaggle/dsv/13225064
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.5065/d65b00s7
title: NSF/NCAR C-130 Forward-Facing Digital Camera MPEG Movies (MSS). Version 1.0

description: This dataset contains MPEG4 movies from a forward facing cockpit camera on the flights of the NSF/NCAR C-130 during MILAGRO. The movies were compiled from the images in the companion dataset.
DOI: 10.5281/zenodo.17182731
title: PIRA dataset
title: (Politics of Independence Referendums Acceptance

description: The PIRA dataset was used for the book Never Mind the Ballots: The Politics of Independence (Palgrave) by J.B. Harguindéguy and M. Sanjaume-Calvet.
DOI: 10.5281/zenodo.17182730
title: PIRA dataset
title: (Politics of Independence Referendums Acceptance

description: The PIRA dataset was used for the book Never Mind the Ballots: The Politics of Independence (Palgrave) by J.B. Harguindéguy and M. Sanjaume-Calvet.
DOI: 10.5281/zenodo.16957924
title: duplicate PD5D_MTG_snRNAseq

description: Correct DOI: 10.5281/zenodo.16751625.
DOI: 10.5065/d61j982c
title: T-REX: Composite Highest Resolution Upper Air Data. Version 1.0

description: Data for the Terrain-induced Rotor Experiment (T-REX) 2006 domain (25°N to 37°N latitude and 118°W to 114°W are contained within this dataset. The dataset covers the time period 1 March 2006 through 30 April 2006. This T-REX 2006 Sounding Composite Highest Resolution Upper-Air Dataset contains 1299 soundings from 13 platforms.
DOI: 10.5065/d6ws8rj7
title: T-REX: Composite 5-mb Level Upper Air Data. Version 1.0

description: This dataset contains upper-air sounding data interpolated to a constant vertical resolution of 5 hPa in the National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Sounding Composite Format. Data for the Terrain-induced Rotor Experiment (T-REX) 2006 domain (25°N to 37°N latitude and 118°W to 114°W are contained within this dataset. The dataset covers the time period 1 March 2006 through 30 April 2006. This T-REX 2006 Sounding Composite 5-mb Resolution Upper-Air Dataset contains 1299 soundings from 13 platforms.
DOI: 10.5281/zenodo.16885832
title: duplicate PD5D_MTG_snRNAseq

description: Correct DOI: 10.5281/zenodo.16751625.
DOI: 10.5281/zenodo.16885831
title: duplicate PD5D_MTG_snRNAseq

description: Correct DOI: 10.5281/zenodo.16751625.
DOI: 10.5065/d6s180sr
title: LDM Surface METAR Special Observations Data (Surface Composite format). Version 1.0

description: This Special Obervation Surface METAR Data set is one of several surface data sets collected by the National Center for Atmospheric Research/Earth Observing Laboratory (NCAR/EOL). Included in the data set are the special METAR observations for the TREX area of interest. These data are contained in day files and are in EOL surface composite ascii format. The data were aquired via the UNIDATA Local Data Manager (LDM).
DOI: 10.15468/dl.ubwktq
title: Occurrence Download

description: A dataset containing 40666 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "CoordinateUncertaintyInMeters 0.0-6.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus",
 "Year 2022-2025"
 ]
}

 The dataset includes 40666 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035827-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5065/d6n8783w
title: Surface Meteorological (5-Minute) Multi-Network Composite. Version 1.0

description: This data set contains five-minute resolution surface meteorological data in National Center for Atmospheric Research/Earth Observing Laboratory (NCAR/EOL) Quality Control (QC) format from stations within the following networks, and from the following participating research organizations, for the Terrain-induced Rotor Experiment (T-REX): Arizona State University (ASU) Environmental Fluid Dynamics Group Sonics Flux Tower, Automated Surface Observing System (ASOS), China Lake ASOS, China Lake Handar, Desert Research Institute (DRI), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Integrated Surface Flux Facility (ISFF), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Integrated Sounding System (ISS), National Center for Atmospheric Research (NCAR) Earth Observing Laboratory (EOL) Mobile Integrated Sounding System (MISS), Tribal Environmental Exchange Network (TREX), University of Houston Flux Tower, University of Leeds Automatic Weather Stations (AWS), and the University of Utah HOBO stations. Data for the Terrain-induced Rotor Experiment (T-REX) domain (34N to 40N latitude and 115W to 126W longitude) and time period (01 March 2006 through 30 April 2006) are contained within this data set. This T-REX Five Minute Surface Meteorological Composite data set contains data from 154 stations.
DOI: 10.5281/zenodo.15483552
title: Annotated Insect Image Dataset for InsectMorphoAI Software

description: Description

This dataset supports the manuscript, "InsectMorphoAI: A deep learning-based software for rapid and non-invasive estimation of insect length, volume, and biomass,". It contains all the annotated image data used to train and validate the deep learning models integrated into the InsectMorphoAI software package.

The dataset is provided to ensure the full reproducibility of our research and to serve as a valuable resource for the community working on automated, image-based analysis of insects.

Dataset Components

The dataset is divided into two primary components, corresponding to the two analysis modules in the InsectMorphoAI software:

1. General-Purpose Dataset (for "Rapid Scan" / OBB)





Purpose: Used to train the general-purpose model for the "Rapid Scan" module, which performs quick linear length estimation.




Content: Contains 815 images of insects from diverse families within the orders Diptera, Hymenoptera, and Coleoptera.




Format: Images (.jpg, .png) and corresponding annotations in YOLO OBB format (.txt).



2. Taxon-Specific Dataset (for "Detailed Analysis" / Segmentation)





Purpose: Used to train the high-precision model for the "Detailed Analysis" module, which performs curvilinear length, volume, and biomass estimation. The model included with the software is specialized for Tachinidae (Diptera).




Content: Contains 1,320 images of various representative tachinid species.




Annotation Strategy: A two-stage annotation strategy was employed, and the dataset is structured to reflect this:

initial_labeling_strategy_820_images: Data corresponding to the initial annotation approach, focusing only on directly visible body parts

final_refined_dataset_500_images: This is the dataset used for the final model. The key refinement in this stage was the explicit annotation of inferred outlines for body parts partially obscured by wings or legs, where reliable estimation was possible.




Format: Images (.png) and corresponding annotations in YOLO segmentation format (.txt).



General Information





Image Acquisition: All images were captured using a high-resolution DIY microscope, the Entomoscope (Wührl et al., 2024). Multiple focal planes were stacked using Helicon Focus to achieve optimal clarity. All specimens were preserved and imaged in ethanol.




Image Diversity: For both datasets, images were captured from various views and orientations to ensure the models are robust to differences in specimen positioning.




Metadata: Detailed specimen information and the ground-truth validation measurements used in the manuscript are provided in the Supplementary Data file accompanying the publication.