cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/7a3kg-ez358
title: T. intermedia autotrophic 26 hrs

description: T. intermedia cell h3 grown in autotrophic conditions for 26 hours
description: <strong>Tilt Series Date:</strong> 2007-11-19</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 26 hours</p>
  civ2007-11-19-3_slicer7164.jpg: s-layer civ2007-11-19-3_slicer7165.jpg: peptidoglycan civ2007-11-19-3_slicer7166.jpg: dividing .  budding vesicle
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-3/rawdata/</p>Ti_a26h_h3_200e13um18K_19nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-3/rawdata/Ti_a26h_h3_200e13um18K_19nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a26h_h3_200e13um18K_19nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 108.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  729.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-3/file_1604/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  729.4 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-19-3/file_1605/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/dyw1r-cqd50
title: T. intermedia autotrophic 1 hr

description: T. intermedia cell h1 grown in autotrophic conditions for 1 hour
description: <strong>Tilt Series Date:</strong> 2007-11-27</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 1 hour</p>
  civ2007-11-27-4_slicer8296.jpg: Thiomonas intermedia .  nested vesicle .  [2014-08-06 15:52:23] Budding membrane civ2007-11-27-4_slicer8297.jpg: Thiomonas intermedia .  ring (21 nm) civ2007-11-27-4_slicer8298.jpg: Thiomonas intermedia .  filament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-27-4/rawdata/</p>Ti_a1h_h1_160e13um18K_27nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-27-4/rawdata/Ti_a1h_h1_160e13um18K_27nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a1h_h1_160e13um18K_27nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 90.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Ti_a1h_h1_160e13um18K_27nov07_bin2_s94_cbxypartial.tif,  1.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-27-4/file_1701/Ti_a1h_h1_160e13um18K_27nov07_bin2_s94_cbxypartial.tif"
        > <i class="download icon"></i> Download </a></p>

        Ti_a1h_h1_160e13um18K_27nov07_bin2_s70_cbxy.tif,  1.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t2nan-6jm48
title: T. intermedia autotrophic 26 hrs

description: T. intermedia cell h2 grown in autotrophic conditions for 26 hours
description: <strong>Tilt Series Date:</strong> 2007-11-16</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Thiomonas intermedia</p>
<strong>Strain:</strong> K12</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -13.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth in autotrophic conditions for 26 hours</p>
  civ2007-11-16-6_slicer6781.jpg: s-layer .  peptidoglycan civ2007-11-16-6_slicer6782.jpg: REZ civ2007-11-16-6_slicer6792.jpg: filament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-6/rawdata/</p>Ti_a26h_h2_200e13um18K_16nov07.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-6/rawdata/Ti_a26h_h2_200e13um18K_16nov07.mrc"
        > <i class="download icon"></i> Download </a></p>

        Ti_a26h_h2_200e13um18K_16nov07_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 140.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        slicer000.tif,  1.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-6/file_2191/slicer000.tif"
        > <i class="download icon"></i> Download </a></p>

        slicer001.tif,  1.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-11-16-6/file_2192/slicer001.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5sr12-8m820
title: Hn under limiting CO2 for 1 hr

description: H. neapolitanus cell h7 under limiting CO2 for 1 hourKeywords: carboxysomes, internal granules
description: <strong>Tilt Series Date:</strong> 2007-09-21</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth under limiting CO2 for 1 hour</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2007-09-21-9/rawdata/</p>Hn1h_h7_180e12um22K_21sept07.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h7_180e12um22K_21sept07_bin1.rec,  Reconstruction (Pixel Size 0.0 nm), 460.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h7_180e12um22K_21sept07_bin2_s77_cbxy_darkdens.tif,  875.2 kB  
        
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        > <i class="download icon"></i> Download </a></p>

        Hn1h_h7_180e12um22K_21sept07_bin2_5ave_rec.mov,  file associated to 3D Image #4184, 16.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.eh8bhq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Butis koilomatodon",
 "Country is Nigeria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037716-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/vxsn3-me064
title: Hn limited in thiosulfate for 8h

description: H. neapolitanus cell h4 limited in thiosulfate for 8 hoursKeywords: carboxysomes
description: <strong>Tilt Series Date:</strong> 2006-05-17</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate for 8 hours</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-3/rawdata/</p>h4_Hn_8h_160e_12um_may17_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-3/rawdata/h4_Hn_8h_160e_12um_may17_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        h4_8h_160e_12um.rec,  Reconstruction (Pixel Size 1.2 nm), 552.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-3/3dimage_4108/h4_8h_160e_12um.rec"
        > <i class="download icon"></i> Download </a></p>

        h4_8h_160e_12um_rec_ave10.mov,  file associated to 3D Image #4108, 31.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-3/file_2021/h4_8h_160e_12um_rec_ave10.mov"
        > <i class="download icon"></i> Download </a></p>

        h4_8h_160e_12um_ali.mov,  file associated to 3D Image #4108, 14.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-3/file_2022/h4_8h_160e_12um_ali.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wwhqg-ncq96
title: Hn limited in thiosulfate for 8h

description: H. neapolitanus cell h5 limited in thiosulfate for 8 hoursKeywords: carboxysomes, irregular carboxysome
description: <strong>Tilt Series Date:</strong> 2006-05-17</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate for 8 hours</p>
  civ2006-05-17-5_slicer6639.jpg: filament
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-5/rawdata/</p>h5_Hn_8h_150e_15um_may17_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-5/rawdata/h5_Hn_8h_150e_15um_may17_06.mrc"
        > <i class="download icon"></i> Download </a></p>

        h5_150e_15um.rec,  Reconstruction (Pixel Size 1.2 nm), 400.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-5/3dimage_4214/h5_150e_15um.rec"
        > <i class="download icon"></i> Download </a></p>

        h5_150e_15um_ali.mov,  file associated to 3D Image #4214, 16.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-5/file_2258/h5_150e_15um_ali.mov"
        > <i class="download icon"></i> Download </a></p>

        h5_150e_15um_rec_10ave.mov,  file associated to 3D Image #4214, 29.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-05-17-5/file_2259/h5_150e_15um_rec_10ave.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wzypyr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Butis koilomatodon",
 "Country is Panama",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037717-250811113504898/datasets/export for details.
DOI: 10.22002/kz87r-e4w18
title: FzlA oe 14hr

description: Raw data files of FzlA oe 14hr
description: <strong>Tilt Series Date:</strong> 2008-10-27</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Strain EG291 was constructed by Erin Goley. Data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cell was induced by xylose for 14hr (FzlA)</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-27-1/rawdata/</p>08oct27a_bx799_1_001.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        08oct27a_bx799_1_0011k.rec,  Reconstruction (Pixel Size 1.288 nm), 468.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        08oct27a_bx799_1_0011k_full.rec,  Reconstruction (Pixel Size 1.288 nm), 1.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        zap000.png,  303.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-10-27-1/file_2480/zap000.png"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/m6ve1-zy180
title: Hn limited in thiosulfate - t0

description: H. neapolitanus cell h1 limited in thiosulfate - t0
description: <strong>Tilt Series Date:</strong> 2006-04-10</p>
<strong>Data Taken By:</strong> Cristina Iancu</p>
<strong>Species / Specimen:</strong> Halothiobacillus neapolitanus</p>
<strong>Strain:</strong> c2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth limited in thiosulfate - t0</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-4/rawdata/</p>h1_Hncellst0_180e_12um_april10_06.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        h1_0h_180e_12um.rec,  Reconstruction (Pixel Size 1.2 nm), 273.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-4/3dimage_4120/h1_0h_180e_12um.rec"
        > <i class="download icon"></i> Download </a></p>

        h1_0h_180e_12um_rec_ave10.mov,  file associated to 3D Image #4120, 19.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-4/file_2037/h1_0h_180e_12um_rec_ave10.mov"
        > <i class="download icon"></i> Download </a></p>

        h1_0h_180e_12um_ali.mov,  file associated to 3D Image #4120, 11.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/civ2006-04-10-4/file_2038/h1_0h_180e_12um_ali.mov"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2cms99
title: Occurrence Download

description: A dataset containing 6106 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophiopogon japonicus"
 ]
}

 The dataset includes 6106 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037713-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/z1hwj-wmj29
title: nucleosome arrays

description: Raw data files of nucleosome arrays
description: <strong>Tilt Series Date:</strong> 2006-06-29</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> nucleosome arrays</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
  NA060629_sam3sq13h04_cut1part03.jpg: surface view of chromatin fiber sam3sq13h04_cut1bnadcut1_segment_v1-2.jpg: manual segmentation of chromatin fiber sam3sq13h04_cut1bnadpart03_segment_v1-2.jpg: manual segmentation of a chromatin fiber sam3sq13h04cut3bnad_slice84.jpg: one slice through the tomogram of a chromatin fiber
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2006-06-29-9/rawdata/</p>NA060629_sam3_sq13_h04_41k_bin2_ali.mrc,  Tilt Series (Pixel Size 1.08 nm), 260.0 MB  
        
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DOI: 10.15468/dl.5gu52q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Butis koilomatodon",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037720-250811113504898/datasets/export for details.