cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zbppjnyyrr.1
title: 2023 Megan Sheridan Western Blots

description: Opportunistic anaerobic pathogen Porphyromonas gingivalis (P.gingivalis) has been associated with poor clinical outcomes in patients with oral squamous cell carcinomas (OSCC). However, precise roles and mechanisms by which P.gingivalis infection enhances OSCC growth/proliferation or resistance to cell death remain elusive. Here, we determined that P.gingivalis infection mediates therapeutic resistance via inhibiting lethal mitophagy in OSCC cells and orthotopic tumors.
DOI: 10.17632/sc2rrb2pft.1
title: cross sectional data for low energy electron collisions with icl molecule using r-matrix method

description: Low energy interactions of electron with ICl molecule. Theoretical method used is R-matrix method. This scattering data is useful for plasma industry and study of atmosphere. Elastic, excitation, differential, momentum transfer, ionization and dissociative electron attachment cross sectional data in different .dat files. Some header files are also provided to understand the huge data.
DOI: 10.17632/sc2rrb2pft.2
title: cross sectional data for low energy electron collisions with icl molecule using r-matrix method

description: Low energy interactions of electron with ICl molecule. Theoretical method used is R-matrix method. This scattering data is useful for plasma industry and study of atmosphere. Elastic, excitation, differential, momentum transfer, ionization and dissociative electron attachment cross sectional data in different .dat files. Some header files are also provided to understand the huge data.
DOI: 10.17632/5wv7b48bhs.1
title: Moss dataset - field survey epilithic urban moss communities

description: Dataset used for the publication: "Moss species for bioreceptive concrete: a survey of epilithic urban moss communities and their dynamics"
DOI: 10.17632/z5whx6dwdf.1
title: Autocrine glutamate signaling drives cell competition in Drosophila

description: Cell competition is an evolutionary conserved quality control process that eliminates suboptimal or potentially dangerous cells. Although differential metabolic states act as direct drivers of competition, how these are measured across tissues is not understood. Here, we demonstrate that the vesicular glutamate transporter VGlut, and autocrine glutamate signaling, are required for cell competition and Myc-driven super-competition in the Drosophila epithelia. We find that loss of glutamate-stimulated VGlut&gt;NMDAR&gt;CaMKII&gt;CrebB signaling triggers loser status and cell death under competitive settings via the autocrine induction of TNF. This in turn drives TNFR&gt;JNK activation, triggering loser cell elimination and PDK/LDH-dependent metabolic reprogramming. Inhibiting caspases or preventing loser cells from transferring lactate to their neighbors nullifies cell competition. Further, in a Drosophila model for premalignancy, Myc-overexpressing clones co-opt this signaling circuit to acquire super-competitor status. Targeting glutamate signaling converts Myc ‘super-competitor’ clones into ‘losers’, highlighting new therapeutic opportunities to restrict the evolution of fitter clones.
DOI: 10.17632/77s5zvgffj.3
title: WB data_PP

description: Western Blotting and qPCR data for iPSC-derived astrocytes in X-ALD.
DOI: 10.17632/s5grjf68br.1
title: Novel interaction between neurotrophic factor alpha1/carboxypeptidase E and serotonin receptor, 5-HTR1E, protects human neurons against oxidative/neuroexcitotoxic stress via beta-arrestin/ERK signaling

description: Raw data for publication "Novel interaction between neurotrophic factor alpha1/carboxypeptidase E and serotonin receptor, 5-HTR1E, protects human neurons against oxidative/neuroexcitotoxic stress via beta-arrestin/ERK signaling".
DOI: 10.17632/s47zjzcb29.1
title: Biowaste-to-energy_techno-economic_modelling_for_the_Scottish_islands

description: Optimisation of waste collection clustering to model scenarios of biowaste-to-energy for the Scottish islands

There are three scripts to the model (preparation and cleaning of the bioresource and OSMnx graphs has been carried out separately).

Distance matrix calculation- for the OSMnx graph, a matrix of distances for all nodes is created.
CVRP routing opimisation with recursive DBSCAN clustering- using the distance matrices, acollection routes are optimised. This returns collection costs for each scenario.
Techno-economic modelling- for scenarios of collection costs, generation technology and catchment area, the levelised cost of energy (LCOE) is calculated.
DOI: 10.17632/2jv2wfycfx.1
title: Simulation data for the comparison of electrolysis technologies in the context of Power-2-Gas

description: Models and simulations for Electrolysis and Power-To -Methane processes.
DOI: 10.17632/xfbg42yb7m.1
title: LINF_020006100

description: Exportin-T; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pchm4c6369.1
title: Repositorio de tesis doctoral: Impacto de las emisiones naturales y antropogénicas sobre la calidad del aire regional en Argentina

description: Repositorio de la tesis doctoral Impacto de las emisiones naturales y antropogénicas sobre la calidad del aire regional en Argentina. 
Listado de archivos contenidos en este repositorio.
Capítulo 2: 
Configurar WPS:
● GEOG.TBL original 
● GEOG.TB modificada
● METGRID.TBL original 
● METGRID.TBL modificada
● Carpeta geog_geaa 

Configurar WRF-Chem
● Compile_wrf_and_deps_v1.sh
● flex_lib_modifications_kpp.txt
● variables.sh
● submit.job
● README.compile_wrf.docx

Capítulo 3:
● código fuente para anthro_emis_merge
● namelist.inp_anthro_emis_merge 
● htap_preprocesamiento.sh
● geaa-aei_preprocesamiento.ipynb
● edgarv5_preprocesamiento.ipynb

Capítulo 5:
● namelist.wps_sub-regional
● namelist.input_sub-regional
● namelist.inp_sub-regional

Capítulo 6:
● namelist.wps_regional 
● namelist.input_regional
● namelisst.inp_regional_category_profile.inp
DOI: 10.17632/cy9hg2pms4.1
title: LINF_020005800

description: Hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/r77bb4kd5y.2
title: Data Iron Isotopes reveal volcanogenic input during Oceanic Anoxic Event 2 (OAE 2 ~94 Ma)

description: Data Fe isotope data during OAE 2 from the Iona-1 core in the western Interior Seaway
DOI: 10.17632/7dy3dhwcnj.1
title: LINF_360032500

description: nucleoporin interacting component (NUP93)
Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.x9azwv
title: Occurrence Download

description: A dataset containing 3919 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rangifer tarandus tarandus"
 ]
}

 The dataset includes 3919 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004415-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ybrj8j8pc4.1
title: FTIR Spectra of 27 films

description: This dataset contains the experimental results of the FTIR spectra of 27 films elaborated with potato starch, glycerol, tara gum, pectin and distilled water in several proportions. The amount of potato starch remains constant and is equal to 2.5 g on 100 g of total mass for each sample.
DOI: 10.17632/d2h85brfjt.1
title: LINF_360033900

description: folylpolyglutamate synthetase | FPGS
Leishmania infantum (strain JPCM5)
DOI: 10.17632/scz9r84wj3.1
title: LINF_360033500

description: membrane-bound acid phosphatase precursor
Leishmania infantum (strain JPCM5)
DOI: 10.17632/kjydggjdcb.1
title: LINF_360034700

description: Pentapeptide repeats (9 copies)
Leishmania infantum (strain JPCM5)
DOI: 10.17632/358jvtp8xz.1
title: LINF_360035400

description: acetyltransferase-like protein
Leishmania infantum (strain JPCM5)
DOI: 10.17632/8b3gt2xk4g.1
title: A condensates-to-VAPVs conversion pathway regulates autophagy degradation in plants

description: Original Data for all the Figures and Supplemental Figures
DOI: 10.17632/jt4symwkpg.1
title: Supplementary Table S1

description: Full dataset of samples analyzed
DOI: 10.17632/3xwzkwf9g7.1
title: Serum metabolic signature differentiates neonatal sepsis from controls and resolves upon recovery.

description: Sepsis, a life-threatening disorder with multi-organ dysfunction, is a leading cause of neonatal mortality. Current microbiology-based sepsis diagnosis is time-consuming, and identification of deregulated host serum metabolite signatures might be useful to develop early screening tools and host-directed therapeutics. In this multi-institutional study, 500 neonates (41%, female) were classified to culture-positive (CP) or negative sepsis (CN) cases and controls (no sepsis: NS, healthy control: HC) based on their microbial culture and mass spectrometry test results. The neonates were randomly grouped into two discovery sets (I:n=71; II:n=269), a validation set (n=60), and a longitudinally followed-up population (n=100). Serum samples of these neonates were processed and profiled using gas chromatography coupled to either quadrupole or time-of-flight mass spectrometry (GC-MS/-TOF-MS). Deregulated (log2¬case/control ≥±0.58, p&lt;0.05) serum metabolites in sepsis cases were identified from the discovery sets and their predictive accuracy in the validation set was calculated using area under the receiving operator characteristic curve (AUC of ROC). The abundance of these deregulated metabolites was monitored in the longitudinally followed-up neonates (CP:n=29, CN:n=35, and NS:n=36) completing therapeutic intervention. Most of the CP cases were Klebsiella pneumoniae (28.6%) or Acinetobacter baumannii (20.6%) positive. Gestational age (CP: 30.9±1.9 weeks, CN: 30.9±1.8 weeks, HC: 32.3±1.3 weeks, NS: 31.6±1.5 weeks) and birthweight (CP: 1.4±0.3 kg, CN: 1.4±0.4 kg, HC: 1.7±0.3 kg, NS: 1.6±0.3 kg) were lower in sepsis neonates compared to controls. Out of 57 identified serum metabolites, a set of six (1,5-Anhydro-D-sorbitol-Lactic-acid-Malic-acid-Myo-inositol-Phenylalanine-Lysine) were identified as sepsis biosignature. The AUC of ROC of the biosignature to predict CP or CN from HC was 0.97 and from NS was 0.84 and 0.64, respectively. Myo-inositol, malic acid, and 1,5-anhydro-D-sorbitol revert to the HC levels in neonates completing therapeutic intervention. A serum metabolite signature showed a &gt;97% predictive accuracy for sepsis and could further be explored for its diagnostic potential and host-directed therapeutics development.
DOI: 10.17632/y6f9ykp4dt.1
title: Think-Aloud Usability Assessment of a Regional Atlas

description: The dataset contains audio recordings of the think-aloud usability assessment of a regional atlas, transcriptions of these recordings, and files from ELAN software. Moreover, the xls file contains a summary of the results of the study. All data were recorded in Czech language.
DOI: 10.17632/ph9m3wmt8b
title: Relation-based Governance, Financial Crisis Shock, and Economic Growth in China

description: For journal article: Relation-based Governance, Financial Crisis Shock, and Economic Growth in China
Raw data and the code will be made public once the article is accepted.
DOI: 10.17632/ph9m3wmt8b.1
title: Relation-based Governance, Financial Crisis Shock, and Economic Growth in China

description: For journal article: Relation-based Governance, Financial Crisis Shock, and Economic Growth in China
Raw data and the code will be made public once the article is accepted.
DOI: 10.17632/ps6kbgs6d4.1
title: A study of Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon. Deng et al.

description: unprocessed data for "Structural RNA components supervise the sequential DNA cleavage in R2 retrotransposon"
DOI: 10.17632/mf5jmt3xc9.1
title: Datasets for the rare metal contents in South China submitted to JGR by YU

description: The dataset includes three data tables (Table S1 to S3). Table S1 contains major and trace element compositions of the basement rocks in different areas of the South China Block (SCB), Table S2 contains the average compositions of the basement rocks in different areas, and Table S3 is the amount of iron species in the Lengjiaxi and Shuangqiaoshan successions in the eastern Jiangnan Orogenic Belt of the SCB.
DOI: 10.17632/mfyddz6n8k.3
title: Files for "Evidence of Collective Influence in Innate Sensing using Fluidic Force Microscopy"

description: Code, Datasets, and Analysis for "Evidence of Collective Influence in Innate Sensing using Fluidic Force Microscopy" manuscript.
DOI: 10.17632/8ydzxmb78h.1
title: Data for bremsstrahlung double-differential cross sections of Ti, Cu, Ag and Au atoms by 10-25 keV electron impact

description: Absolute measurements of the bremsstrahlung double-differential cross sections (DDCSs) for photons radiated at 90 degrees generated by the collisions of 10-25 keV electrons and down to approximately 3 keV photon energy with four thin-film targets Ti, Cu, Ag and Au have been performed by Ling Li et al. and published in Physical Review A 107 (2023) L020802.
Our experimental scaled DDCSs, which were used to plot figures in Physical Review A 107 (2023) L020802, are given in the following tables:
1. Elements: Ti, Cu, Ag and Au
2. Incident electron energies: 10, 15, 20, 25 keV
3. The first column: κ, the ratio of the energy of the bremsstrahlung photon to the energy of the incident electron
4. The second column: Sigma-expt, experimental scaled bremsstrahlung double-differential cross sections, unit: mb/sr
5. The third column: Uncertainty of Sigma-expt, unit: mb/sr
DOI: 10.17632/k6cpmwybk3.2
title: BUSI_WHU: Breast Cancer Ultrasound Image Dataset

description: We collected breast cancer ultrasound images diagnosed breast cancer in radiology of Renmin Hospital of Wuhan University from December 2020 to December 2022. The dataset contains 927 images including benign and malignant cancer from patients with the range of age 17 to 79. Meanwhile, the ethical approval of this study was approved by the ethics committee of Renmin Hospital of Wuhan University (WDRY2022-K217). Each image contains tumor regions. At the same time, the dataset has different tumor area and morphology features, including contrast, brightness, and fuzzy. In summary, we collected a breast ultrasound image for the segmentation task.
DOI: 10.17632/g92xx8wcvp.1
title: CUSP9v3-U3118-part1

description: Label-free live-cell imaging and endpoint cell viability data obtained from exposing the patient derived glioblastoma cell line U3118 (see related article below), on all single drugs of the CUSP9v3 protocol up to all combinations of order 4. The standard-of-care drug, temozolomide, was also used as a single treatment as well as add-on to all combinations. 

There are 4 .zip files containing all the imaging data, one for each 384-well plate used. Every .zip file contains 5544 grayscale images of size 800x992 pixels and every experimental well consists of a temporal sequence of 18 such images. The experiment was performed in quadruplicate and the associated plate layouts used for acoustic liquid dispension are also included as .xlsx files. The .log file contains the cell viability data for all plates.
DOI: 10.17632/pngtj6ymnp.1
title: Rapid incipient speciation in a free-living protist flagellate: disentangling the effects of environment and geography

description: This dataset includes R scripts used to analyse the data and multiple alignments of organellar loci and ITS rDNA sequences.
DOI: 10.17632/pngtj6ymnp.2
title: Rapid incipient speciation in a free-living protist is driven by climatic and habitat factors

description: This dataset includes R scripts used to analyse the data and multiple alignments of organellar loci and ITS rDNA sequences.
DOI: 10.17632/pngtj6ymnp.3
title: Rapid diversification of a free-living protist is driven by adaptation to climate and habitat

description: This dataset includes R scripts used to analyse the data and multiple alignments of organellar loci and ITS rDNA sequences.
DOI: 10.17632/zbppjnyyrr.2
title: 2024 Megan Sheridan Western Blots

description: Opportunistic anaerobic pathogen Porphyromonas gingivalis (P.gingivalis) has been associated with poor clinical outcomes in patients with oral squamous cell carcinomas (OSCC). However, precise roles and mechanisms by which P.gingivalis infection enhances OSCC growth/proliferation or resistance to cell death remain elusive. Here, we determined that P.gingivalis infection mediates therapeutic resistance via inhibiting lethal mitophagy in OSCC cells and orthotopic tumors.
DOI: 10.17632/cf86yrfr6y.2
title: Alignment of 260 Echinococcus granulosus sensu stricto nad5 partial sequences

description: Fasta file with the alignment of nad5 mitochondrial gene fragment (670 bp) of E. granulosus sensu stricto. The dataset contains 260 DNA sequences representing all the haplotypes available as of 10 October 2023 (for additional data on the haplotypes see Supplementary Table 3).
DOI: 10.17632/9vnz5y9yzy.1
title: Heterogeneous Liquidity Providers and Night-minus-day Return Predictability

description: Replication package for "Heterogeneous Liquidity Providers and Night-minus-day Return Predictability" by Lu, Malliaris, and Qin
DOI: 10.17632/rx6k9r7993.1
title: Financial models of cacao production systems in Colombia, Ecuador and Peru

description: Models including cashflow and profit and loss statements of fifteen different cacao production systems in Colombia, Ecuador and Perú (in spanish).
DOI: 10.17632/zz3ktsyjds.1
title: A class-defining nitrosylase that regulates metabolic health

description: Raw images for Western blots
DOI: 10.17632/zz3ktsyjds.2
title: An enzyme that selectively S-nitrosylates proteins to regulate insulin signaling

description: Raw images for Western blots
DOI: 10.17632/szdm7vxbp2.1
title: Droplet-based pico-reactors for high-throughput phenotyping and selection of biofilm-producing bacteria

description: Biofilm formation is a natural strategy for many bacteria to survive in extreme environments. It is a protective layer consisting of extracellular DNA (eDNA), proteins, and polysaccharides, making them inaccessible to antibiotics or biocides. In recent years, microfluidic flow systems for biofilm studies have provided more precise environment control. However, the primary method for quantitative biofilm analysis relies heavily on microscopy, resulting in a low-throughput quantitative measurement with a limited image-scanning area. Not to mention, it is also a time-consuming process. Although the current advances allowed biofilm to be analysed at a higher level of detail by new and better hardware, the physical dissection and isolation of single cells and matrix components from living biofilms remain unsolved and unsatisfactory. Flow cytometry is an ideal method allowing a high-throughput quantitative analysis. Therefore, scientists propose to analyse biofilm formed in a microfluidic device, achieving both high-throughput analyses with precise biofilm formation control and high-throughput by integrating microfludics and flow cytometry. However, the reality is that flow cytometry is an end-point destructive measurement. The sample needs to be transferred from a microfluidic channel to a suspension for flow cytometry. Also, the biofilm is a complex matrix comprised of extracellular polymeric substances (EPS), making it impossible to be detected using the flow cytometry approach. Thus, we proposed a novel method that achieved a high-precise control of the environment for biofilm formation and a high-throughput quantitative analysis by integrating the microfluidic-droplet method and flow cytometry with fluorescence-activated cell sorting. We used Acinetobacter baumannii (A. baumannii) as our biological example as it is well-known organism to use biofilm production as a virulence factor. In this study, we successfully isolated A. baumannii based on their biofilm productivity. In addition, the isolates were recovered and vaible for future culture. We found that the biofilm phenotypes persisted after the cycle of isolation and recovery. This is to our best knowledge the first time that the use of microfluidic-droplet integrated with flow cytometry in biofilm study. We believe this method would provide new opportunities to link the biofilm phenotype to genotype, deepening the future biofilm studies.
DOI: 10.17632/73m9trbyg4.1
title: Intertidal data

description: DEM: Digital Elevation Models (tiff files) from in-situ data and modeled data through two methods (Hybrid - HYB and Traditional Waterline Method - WL).
AOI 1, AOI 2 and AOI 3 in-situ data: Laser Scanner, 20cm uncertainty, 10m resolution (Acquisition: 04 to 07, May 20203).
AOI 4 and AOI 5 in-situ data: drone and RTK, 20cm uncertainty, 10m resolution. (Acquisition: 30 October 2023).
AOI 6 in-situ data: LiDAR, 1m resolution, 20cm uncertainty(Acquisition: October 2019 to October 2022), fully available by New Zealand government database in https://data.linz.govt.nz/.

WATERLINES: dataset of waterlines (HYB) or points along waterlines (WL) with corresponding water level information (Shapefiles). The elevation values are referenced to the local vertical datum specific to each AOI (DHN for Brazil and Moturiki for New Zealand). 
AOI 1, AOI 2 and AOI 3 modeled data: March to August 2023;
AOI 4 and AOI 5 modeled data: July to October 2023.
AOI 6 modeled data: January to May 2019.

AREA: Area of intertidal zone for six AOIs as Shapefiles, where AOI 1 id the flood tide delta, AOI 2 is the upper estuary, and AOI 3 is the flood tide delta on Linguado Channel both from Babitonga Bay (southern Brazil). AOI 4 is a beach located at Vale company on Ponta da Madeira and AOI 5 is the Amor beach, both on São Luís, northeast Brazil. Finally, AOI 6 is Tauranga Bay, on New Zealand.
DOI: 10.17632/73m9trbyg4.2
title: Intertidal data

description: DEM: Digital Elevation Models (tiff files) from in-situ data and modeled data through two methods (Hybrid - HYB and Traditional Waterline Method - WL).
AOI 1, AOI 2 and AOI 3 in-situ data: Laser Scanner, 20cm uncertainty, 10m resolution (Acquisition: 04 to 07, May 20203).
AOI 4 and AOI 5 in-situ data: drone and RTK, 20cm uncertainty, 10m resolution. (Acquisition: 30 October 2023).
AOI 6 in-situ data: LiDAR, 1m resolution, 20cm uncertainty(Acquisition: October 2019 to October 2022), fully available by New Zealand government database in https://data.linz.govt.nz/.

WATERLINES: dataset of waterlines (HYB) or points along waterlines (WL) with corresponding water level information (Shapefiles). The elevation values are referenced to the local vertical datum specific to each AOI (DHN for Brazil and Moturiki for New Zealand). 
AOI 1, AOI 2 and AOI 3 modeled data: March to August 2023;
AOI 4 and AOI 5 modeled data: July to October 2023.
AOI 6 modeled data: January to May 2019.

AREA: Area of intertidal zone for six AOIs as Shapefiles, where AOI 1 id the flood tide delta, AOI 2 is the upper estuary, and AOI 3 is the flood tide delta on Linguado Channel both from Babitonga Bay (southern Brazil). AOI 4 is a beach located at Vale company on Ponta da Madeira and AOI 5 is the Amor beach, both on São Luís, northeast Brazil. Finally, AOI 6 is Tauranga Bay, on New Zealand.