cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17161295.v1
title: Files S3 and S4. Filtered .map and .ped files (563,042 SNPs) for 102 BCHF matched case-control pairs, Filename: BCHF102pairsHD770Filtered (20.9 and 438.2 Mb, respectively.)

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.
DOI: 10.5063/f1jh3jmd
title: In vitro fertilization in Kazakh Whiteheaded Cattle

description: In vitro fertilization (IVF) technologies have great potential in the preservation of endangered species. In the current study, an IVF experiment was carried out to evaluate the reproductive characteristics of Kazakh Whiteheaded cattle aimed at preserving this breed whose population has reduced drastically over the last thirty years.
DOI: 10.6084/m9.figshare.19114094
title: Code from Nonlinear system of ????????-symmetric excitations and Toda vibrations integrable by the Darboux–Bäcklund dressing method

description: The nonlinear dynamics of coupled 𝒫𝒯-symmetric excitations and Toda-like vibrations on a one-dimensional lattice are studied analytically and elucidated graphically. The nonlinear exciton-phonon system as the whole is shown to be integrable in the Lax sense inasmuch as it admits the zero-curvature representation supported by the auxiliary linear problem of third order. Inspired by this fact, we have developed in detail the Darboux–Bäcklund integration technique appropriate to generate a higher-rank crop solution by dressing a lower-rank (supposedly known) seed solution. In the framework of this approach, we have found a rather non-trivial four-component analytical solution exhibiting the crossover between the monopole and dipole regimes in the spatial distribution of intra-site excitations. This effect is inseparable from the pronounced mutual influence between the interacting subsystems in the form of specific nonlinear superposition of two essentially distinct types of travelling waves. We have established the criterion of monopole-dipole transition based upon the interplay between the localization parameter of Toda mode and the inter-subsystem coupling parameter.
DOI: 10.6084/m9.figshare.19114094.v2
title: Code from Nonlinear system of ????????-symmetric excitations and Toda vibrations integrable by the Darboux–Bäcklund dressing method

description: The nonlinear dynamics of coupled 𝒫𝒯-symmetric excitations and Toda-like vibrations on a one-dimensional lattice are studied analytically and elucidated graphically. The nonlinear exciton-phonon system as the whole is shown to be integrable in the Lax sense inasmuch as it admits the zero-curvature representation supported by the auxiliary linear problem of third order. Inspired by this fact, we have developed in detail the Darboux–Bäcklund integration technique appropriate to generate a higher-rank crop solution by dressing a lower-rank (supposedly known) seed solution. In the framework of this approach, we have found a rather non-trivial four-component analytical solution exhibiting the crossover between the monopole and dipole regimes in the spatial distribution of intra-site excitations. This effect is inseparable from the pronounced mutual influence between the interacting subsystems in the form of specific nonlinear superposition of two essentially distinct types of travelling waves. We have established the criterion of monopole-dipole transition based upon the interplay between the localization parameter of Toda mode and the inter-subsystem coupling parameter.
DOI: 10.6084/m9.figshare.19114094.v1
title: 0 from Nonlinear system of ????????-symmetric excitations and Toda vibrations integrable by the Darboux–Bäcklund dressing method

description: The nonlinear dynamics of coupled 𝒫𝒯-symmetric excitations and Toda-like vibrations on a one-dimensional lattice are studied analytically and elucidated graphically. The nonlinear exciton-phonon system as the whole is shown to be integrable in the Lax sense inasmuch as it admits the zero-curvature representation supported by the auxiliary linear problem of third order. Inspired by this fact, we have developed in detail the Darboux–Bäcklund integration technique appropriate to generate a higher-rank crop solution by dressing a lower-rank (supposedly known) seed solution. In the framework of this approach, we have found a rather non-trivial four-component analytical solution exhibiting the crossover between the monopole and dipole regimes in the spatial distribution of intra-site excitations. This effect is inseparable from the pronounced mutual influence between the interacting subsystems in the form of specific nonlinear superposition of two essentially distinct types of travelling waves. We have established the criterion of monopole-dipole transition based upon the interplay between the localization parameter of Toda mode and the inter-subsystem coupling parameter.
DOI: 10.5281/zenodo.5932408
title: EPMA dataset - Tso Morari granites

description: Accompanying datatset for publiication entitled <strong>"The emplacement, alteration, subduction and metamorphism of metagranites from the Tso Morari complex, Ladakh Himalaya"</strong> Thin sections were made from 11 macroscopically undeformed granite samples from the Tso Morari complex. Samples 11-01, 11-02, L08-04 and a05-10 were selected for detailed petrological analysis. Major element compositions of minerals that exhibit solid solutions were measured using a Cameca SX-5 field emission electron microprobe (EMPA) at the Department of Earth Sciences, University of Oxford. All EMPA analyses were conducted with 15 keV acceleration potential, 20 nA beam current. For all major elements, the on-peak count time was 30 seconds with 30 seconds background count. Ti was measured with a 60 seconds on-peak count time and 60 seconds background collection. A range of natural and synthetic oxide standards were used including albite (Na, Al, Si), MgO (Mg), wollastonite (Ca), andradite (Fe), Mn (Mn) and TiO<sub>2</sub> (Ti) and analyses were verified against secondary mineral standards. Raw analyses were automatically corrected for atomic number, absorption and fluorescence using the <em>phi-rho-z</em> matrix correction routine (Merlet, 1994). Mineral spot analyses and line profiles were taken across white mica and garnet to determine the extent of intracrystalline compositional variation.
DOI: 10.5281/zenodo.5932407
title: EPMA dataset - Tso Morari granites

description: Accompanying datatset for publiication entitled <strong>"The emplacement, alteration, subduction and metamorphism of metagranites from the Tso Morari complex, Ladakh Himalaya"</strong> Thin sections were made from 11 macroscopically undeformed granite samples from the Tso Morari complex. Samples 11-01, 11-02, L08-04 and a05-10 were selected for detailed petrological analysis. Major element compositions of minerals that exhibit solid solutions were measured using a Cameca SX-5 field emission electron microprobe (EMPA) at the Department of Earth Sciences, University of Oxford. All EMPA analyses were conducted with 15 keV acceleration potential, 20 nA beam current. For all major elements, the on-peak count time was 30 seconds with 30 seconds background count. Ti was measured with a 60 seconds on-peak count time and 60 seconds background collection. A range of natural and synthetic oxide standards were used including albite (Na, Al, Si), MgO (Mg), wollastonite (Ca), andradite (Fe), Mn (Mn) and TiO<sub>2</sub> (Ti) and analyses were verified against secondary mineral standards. Raw analyses were automatically corrected for atomic number, absorption and fluorescence using the <em>phi-rho-z</em> matrix correction routine (Merlet, 1994). Mineral spot analyses and line profiles were taken across white mica and garnet to determine the extent of intracrystalline compositional variation.
DOI: 10.15784/601515
title: Ice permeameter experimental parameters and results

description: This dataset contains parameters and results of laboratory experiments in which the permeability of temperate ice was measured for various grain sizes and hydraulic gradients.
DOI: 10.6084/m9.figshare.19123268
title: Transcripción Focus Group.pdf

description: Transcripción completa del grupo focal<br>
DOI: 10.6084/m9.figshare.19123268.v1
title: Transcripción Focus Group.pdf

description: Transcripción completa del grupo focal<br>
DOI: 10.6084/m9.figshare.19123265
title: Respuestas a encuestas y entrevistas.xlsx

description: Paquete de respuestas a las encuestas y entrevistas<br>
DOI: 10.6084/m9.figshare.19123265.v1
title: Respuestas a encuestas y entrevistas.xlsx

description: Paquete de respuestas a las encuestas y entrevistas<br>
DOI: 10.25345/c52297
title: MassIVE MSV000088782 - Structural characterization of the endosulfatase Sulf-2 by mass spectrometry
title: Sulfs represent a class of unconventional sulfatases, which provide an original post-synthetic regulatory mechanism for heparan sulfate polysaccharides and have been involved in multiple physiopathological processes, including cancer. While numerous studies point out the role of HSulf-2 in crucial physiological processes as well as in pathological conditions particularly in cancer, its structural organization in two chains and its functional properties remain poorly understood. In this study, we report thecharacterization by mass spectrometry (MS) of HSulf-2
DOI: 10.6084/m9.figshare.19123220
title: Cuestionario encuesta.pdf

description: Cuestionario de la encuesta realizada<br>
DOI: 10.6084/m9.figshare.16583387
title: Dataset of Solution-based Inorganic Materials Synthesis Procedures Extracted from the Scientific Literature

description: In this work, we applied advanced machine learning and natural language processing techniques to construct a dataset of 35,675 solution-based synthesis procedures extracted from the scientific literature. Each procedure contains essential synthesis information including the precursors and target materials, their quantities, and the synthesis actions and corresponding attributes. Every procedure is also augmented with the reaction formula. Through this work, we are making freely available the first large dataset of solution-based inorganic materials synthesis procedures.
DOI: 10.6084/m9.figshare.16583387.v3
title: Dataset of Solution-based Inorganic Materials Synthesis Procedures Extracted from the Scientific Literature

description: In this work, we applied advanced machine learning and natural language processing techniques to construct a dataset of 35,675 solution-based synthesis procedures extracted from the scientific literature. Each procedure contains essential synthesis information including the precursors and target materials, their quantities, and the synthesis actions and corresponding attributes. Every procedure is also augmented with the reaction formula. Through this work, we are making freely available the first large dataset of solution-based inorganic materials synthesis procedures.
DOI: 10.6084/m9.figshare.19123253
title: Guión entrevista.pdf

description: Guión de la entrevista realizada<br>
DOI: 10.6084/m9.figshare.19123253.v1
title: Guión entrevista.pdf

description: Guión de la entrevista realizada<br>
DOI: 10.25345/c5x879
title: MassIVE MSV000088783 - Accumulation of acylcarnitines and mitochondrial dysfunction characterize the loss of neonatal myocardial regeneration capacity
title: Myocardial regeneration capacity declines during the first week after birth and is linked to the adaptation to oxidative metabolism. Utilizing this regenerative window, we characterized the metabolic changes in myocardial injury in 1-day-old regeneration-competent and 7-day-old regeneration-compromised mice. The mice were either sham-operated or received left anterior descending coronary artery ligation, to induce myocardial infarction (MI) and acute ischemic heart failure. Myocardial tissue samples were collected after 21 days for metabolomics, transcriptomics and proteomics analyses. Phenotypic characterizations were carried out using echocardiography, histology as well as mitochondrial structural and functional measurements. By integrating the findings from metabolome and transcriptome examinations, we identified mitochondrial dysfunction at the level of the carnitine shuttle contributing to myocardial regeneration incompetence. Regeneration failure was linked to accumulation of acylcarnitines and insufficient metabolic capacity for fatty acid beta-oxidation. We further identified specific transcription factors and post-transcriptional regulation contributing to both regeneration competence and failure. Rather than shifting from the preferred myocardial oxidative fuel source, our results put forward the facilitation of mitochondrial fatty acid transport and improving the beta- oxidation pathway to overcome the metabolic barriers for repair and regeneration in adult mammals after MI and heart failure.
DOI: 10.6084/m9.figshare.19123157
title: Notes on the geographic distribution of the Useful Plants of Colombia (dataset of georeferenced plant records)

description: This dataset contains the georeferenced plant records used for the chapter "<b>Notes on the geographic distribution of the Useful Plants of Colombia</b>", in the Catalogue of Useful Plants of Colombia (Negrão, Monroe, Castellanos & Diazgranados (Eds.) 2022). Georeferenced occurrence records were downloaded from GBIF on 15 July 2021 (GBIF Occurrence Download, 2021), using the R package rgbif v3.5.2 (Chamberlain and Boettiger, 2017) in R v.4.1.1 (R Core Team, 2020). We cleaned these data with the shinyCCleaner tool by removing records: with coordinates outside Colombia; duplicates; assigned to country’s centroids or institutions; non-terrestrial; rounded to less than one decimal place; with equal or zero longitudes and latitudes; and within 1 km of the capital. Because of the importance of using some naturalised and cultivated species, which have been already incorporated into the cultural practices by communities, we carried out all the analyses on all useful plants regardless of their origin. The cleaned database of georeferenced records (occurrences) included 435,230 occurrences, belonging to 6,320 (85%) species, 1,936 (91%) genera, and 248 (96%) families. The list used for the analyses included 6,897 (92%) species with confirmed presence in at least one Colombian department, and 6,581 (89%) species showed elevation range information. The majority of useful plants of Colombia are native (at least 5,881 species, 78.6%), including 481 endemic species to Colombia (8.2% of the native species). There are at least 643 naturalised species and 1,077 cultivated species reported.
DOI: 10.5281/zenodo.5900902
title: Wind Speed vs Spanish Power Prices

description: Average, min and max daily OMIE power prices (Spanish market) with corresponding wind average speed and maximum speed for each day. Units: €/MWh (Power Price), km/h (wind speed).
DOI: 10.5281/zenodo.5898351
title: Wind Speed vs Spanish Power Prices

description: Average, min and max daily OMIE power prices (Spanish market) with corresponding wind average speed and maximum speed for each day. Units: €/MWh (Power Price), km/h (wind speed).
DOI: 10.34740/kaggle/dsv/3139528
title: Vietnam SARS-CoV-2 | COVID-19 Data
DOI: 10.5519/qd.uz9orxma
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (35 records)
DOI: 10.5517/ccdc.csd.cc280y08
title: CCDC 2086269: Experimental Crystal Structure Determination

description: Related Article: Lihong Bao, Leighton O. Jones, Ana M. Garrote Cañas, Yunhan Yan, Christopher M. Pask, Michaele J. Hardie, Martin A. Mosquera, George C. Schatz, Natalia N. Sergeeva|2022|RSC Advances|12|2684|doi:10.1039/D1RA07811A
DOI: 10.5517/ccdc.csd.cc280y19
title: CCDC 2086270: Experimental Crystal Structure Determination

description: Related Article: Lihong Bao, Leighton O. Jones, Ana M. Garrote Cañas, Yunhan Yan, Christopher M. Pask, Michaele J. Hardie, Martin A. Mosquera, George C. Schatz, Natalia N. Sergeeva|2022|RSC Advances|12|2684|doi:10.1039/D1RA07811A
DOI: 10.5517/ccdc.csd.cc280y2b
title: CCDC 2086271: Experimental Crystal Structure Determination

description: Related Article: Lihong Bao, Leighton O. Jones, Ana M. Garrote Cañas, Yunhan Yan, Christopher M. Pask, Michaele J. Hardie, Martin A. Mosquera, George C. Schatz, Natalia N. Sergeeva|2022|RSC Advances|12|2684|doi:10.1039/D1RA07811A
DOI: 10.5517/ccdc.csd.cc280y3c
title: CCDC 2086272: Experimental Crystal Structure Determination

description: Related Article: Lihong Bao, Leighton O. Jones, Ana M. Garrote Cañas, Yunhan Yan, Christopher M. Pask, Michaele J. Hardie, Martin A. Mosquera, George C. Schatz, Natalia N. Sergeeva|2022|RSC Advances|12|2684|doi:10.1039/D1RA07811A
DOI: 10.5517/ccdc.csd.cc28kb5c
title: CCDC 2102022: Experimental Crystal Structure Determination

description: Related Article: Peng Zhang|2021|CSD Communication|||
description: Related Article: Peng Zhang, Jia Zeng, Ping Pan, Xue-jing Zhang, Ming Yan|2022|Org.Lett.|24|536|doi:10.1021/acs.orglett.1c03952
DOI: 10.5517/ccdc.csd.cc28l8pv
title: CCDC 2102937: Experimental Crystal Structure Determination

description: Related Article: Yuqi Zhu, Ting Zhou, Hong Zhang, Jieyin He, Hongguang Li, Ming Lang, Jian Wang, Shiyong Peng|2022|J.Org.Chem.|87|1074|doi:10.1021/acs.joc.1c02386
DOI: 10.5517/ccdc.csd.cc28qhxf
title: CCDC 2107005: Experimental Crystal Structure Determination

description: Related Article: Xin-Dong Jiang|2021|CSD Communication|||
description: Related Article: Jinhui Li, Jie Wang, Dongxiang Zhang, Tianfang Cui, Zhangrun Xu, Xin-Dong Jiang|2022|Dyes Pigm.|199|110092|doi:10.1016/j.dyepig.2022.110092
DOI: 10.5517/ccdc.csd.cc28vzy2
title: CCDC 2111315: Experimental Crystal Structure Determination

description: Related Article: Rafael D. C. Gallo, Marcelo Duarte, Amanda F. da Silva, Celso Y. Okada Junior, Victor M. Deflon, Igor D. Jurberg|2021|Org.Lett.|23|8916|doi:10.1021/acs.orglett.1c03406
DOI: 10.5517/ccdc.csd.cc28w129
title: CCDC 2111350: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Lizhi Tao, Toby J. Woods, R. David Britt, Thomas B. Rauchfuss|2022|J.Am.Chem.Soc.|144|1534|doi:10.1021/jacs.1c12506
DOI: 10.5517/ccdc.csd.cc28w13b
title: CCDC 2111351: Experimental Crystal Structure Determination

description: Related Article: Yu Zhang, Lizhi Tao, Toby J. Woods, R. David Britt, Thomas B. Rauchfuss|2022|J.Am.Chem.Soc.|144|1534|doi:10.1021/jacs.1c12506
DOI: 10.6084/m9.figshare.17159339
title: Files S5 and S6. Unfiltered .map and .ped files (777,962 SNPs) for 102 BCHF pairs and 96 MBCDPv2.9 bulls, filename: BCHF102_MBCDP29_HD778 (27.6 and 890.3 Mb, respectively).

description: Bovine congestive heart failure (BCHF) has become increasingly prevalent among feedlot cattle in the Western Great Plains of North America with up to 7% mortality in affected herds. BCHF is an untreatable complex condition involving pulmonary hypertension that culminates in right ventricular failure and death. Genes associated with BCHF in feedlot cattle have not been previously identified. Our aim was to search for genomic regions associated with this disease. A retrospective, matched case-control design with 102 clinical BCHF cases and their unaffected penmates was used in a genome-wide association study. Paired nominal data from approximately 560k filtered single nucleotide polymorphisms (SNPs) were analyzed with McNemar’s test. The most significant genome-wide association was in the arrestin domain-containing 3 protein gene (ARRDC3), followed by the nuclear factor IA gene (NFIA, mid-p-values, 1x10E-8 and 2x10E-7, respectively). Animals with homozygous risk alleles at either gene were approximately 8-fold more likely to have BCHF than their matched penmates without those risk alleles (CI95 = 3-17). Animals with homozygous risk alleles at both genes were 28-fold more likely to have BCHF than all others (p-value = 1x10E-7, CI95 = 4-206). A linked missense variant in ARRDC3 (C182Y) represents a potential functional variant since C182 is conserved among all other jawed vertebrate species observed. A DNA test with two markers showed 29% of 273 BCHF cases had homozygous risk alleles in both genes, compared to 2.5% in 198 similar unaffected feedlot cattle. This DNA test may be useful for identifying feedlot animals with the highest risk for BCHF in the environments described here. Although pathogenic roles for ARRDC3 and NFIA variants associated with BCHF are unknown, their discovery facilitates classifying animals by genetic risk and allows cattle producers to make informed decisions for selective breeding and animal health management.