cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.8163882
title: Dataset and figures for "Nationwide urban ground deformation in Japan for 15 years detected by ALOS, Sentinel-1, and LiCSBAS"

description: This dataset contains the LiCSBAS results and figures (LOS velocities, decomposed vertical and EW velocities, optical images, SB network, mask) mentioned in the paper “Nationwide urban ground deformation in Japan for 15 years detected by ALOS, Sentinel-1, and LiCSBAS”.
DOI: 10.6084/m9.figshare.21994993
title: A review of pollen types foraged by <i>Melipona</i> in the Brazilian Amazon

description: Bees of the genus <i>Melipona</i> found in the Amazon are investigated given their ecological, sociocultural and economic importance. The objective of this work was to analyze the scientific literature to recognize patterns in the richness of pollen types foraged by <i>Melipona</i>, comparing four methodological approaches. In the literature review, two databases were consulted: Web of Science (WoS) and the Scientific Electronic Library Online (SciELO). A record of 18 <i>Melipona</i> species investigated in 23 studies was found. These foraged 498 pollen types distributed in 88 botanical families. Many factors affect this richness. The main factor is the sampling time, which can influence other decisions. The highest richness estimates were found in the 12 month studies. The differences between the vegetation types reflect the patterns of diversity naturally found between them. Material from the meliponaries and bee corbels will result in a greater diversity of pollen types. Although there has been an increase in <i>Melipona</i> studies in the Amazon more effort is needed to fill the gaps in this vast territory.
DOI: 10.6084/m9.figshare.22578165
title: Descriptive systematics of Upper Palaeocene–Lower Eocene pollen and spores from the northern Niger Delta, south-eastern Nigeria

description: Fossil pollen and spores are a vital source of information on the geological history of tropical vegetation including reconstructions of vegetation diversity and composition. However, such work relies on a sound taxonomic framework, and this is challenging to achieve because of the large number of pollen and spore morphotypes that are encountered in palynological preparations from tropical sediments. In tropical West Africa, for example, extensive taxonomic work on Cretaceous–Paleogene pollen and spores was undertaken in the later part of the twentieth century, but more recent palynological work has focussed on stratigraphy and basin evolution, and there is a need for additional taxonomic work on the pollen and spores of this region. We have undertaken a descriptive systematic study of pollen and spores (sporomorphs) from 15 sediment samples spanning the Upper Palaeocene–Lower Eocene of south-eastern Nigeria. A palynoflora consisting of 29 spores, two gymnosperm pollen grains, and 138 angiosperm pollen grains is described. Two new spore species are proposed, and one new genus and 18 new species of angiosperm pollen are proposed. The general vegetation type represented by the palynoflora consists of palm-dominated swamps, perhaps with mangroves. The richness of each sample ranges from 29 to 76 sporomorph taxa, and rarefaction analysis suggests an increase in diversity from the Palaeocene to the Eocene in this region. Samples from the Palaeocene Upper Nsukka Formation are dominated by pollen with botanical affinities to the Arecaceae (palms) and Araceae (arums), and this assemblage is very similar to the Palaeocene in the Neotropics.
DOI: 10.6084/m9.figshare.21994993.v2
title: A review of pollen types foraged by <i>Melipona</i> in the Brazilian Amazon

description: Bees of the genus <i>Melipona</i> found in the Amazon are investigated given their ecological, sociocultural and economic importance. The objective of this work was to analyze the scientific literature to recognize patterns in the richness of pollen types foraged by <i>Melipona</i>, comparing four methodological approaches. In the literature review, two databases were consulted: Web of Science (WoS) and the Scientific Electronic Library Online (SciELO). A record of 18 <i>Melipona</i> species investigated in 23 studies was found. These foraged 498 pollen types distributed in 88 botanical families. Many factors affect this richness. The main factor is the sampling time, which can influence other decisions. The highest richness estimates were found in the 12 month studies. The differences between the vegetation types reflect the patterns of diversity naturally found between them. Material from the meliponaries and bee corbels will result in a greater diversity of pollen types. Although there has been an increase in <i>Melipona</i> studies in the Amazon more effort is needed to fill the gaps in this vast territory.
DOI: 10.6084/m9.figshare.22578165.v2
title: Descriptive systematics of Upper Palaeocene–Lower Eocene pollen and spores from the northern Niger Delta, south-eastern Nigeria

description: Fossil pollen and spores are a vital source of information on the geological history of tropical vegetation including reconstructions of vegetation diversity and composition. However, such work relies on a sound taxonomic framework, and this is challenging to achieve because of the large number of pollen and spore morphotypes that are encountered in palynological preparations from tropical sediments. In tropical West Africa, for example, extensive taxonomic work on Cretaceous–Paleogene pollen and spores was undertaken in the later part of the twentieth century, but more recent palynological work has focussed on stratigraphy and basin evolution, and there is a need for additional taxonomic work on the pollen and spores of this region. We have undertaken a descriptive systematic study of pollen and spores (sporomorphs) from 15 sediment samples spanning the Upper Palaeocene–Lower Eocene of south-eastern Nigeria. A palynoflora consisting of 29 spores, two gymnosperm pollen grains, and 138 angiosperm pollen grains is described. Two new spore species are proposed, and one new genus and 18 new species of angiosperm pollen are proposed. The general vegetation type represented by the palynoflora consists of palm-dominated swamps, perhaps with mangroves. The richness of each sample ranges from 29 to 76 sporomorph taxa, and rarefaction analysis suggests an increase in diversity from the Palaeocene to the Eocene in this region. Samples from the Palaeocene Upper Nsukka Formation are dominated by pollen with botanical affinities to the Arecaceae (palms) and Araceae (arums), and this assemblage is very similar to the Palaeocene in the Neotropics.
DOI: 10.6084/m9.figshare.22801159
title: Miocene dinoflagellate cyst biostratigraphy of the Península Valdés, Patagonia, Argentina

description: The present work documents the stratigraphic distribution of dinoflagellate cysts from the upper part (60–585 m) of the YPF.Ch. PV. es-1 borehole, Península Valdés, Argentina. The assemblages exhibit a relatively moderate to low diversity. Most samples are characterized by frequent to abundant taxa of the order Gonyaulacales, such as <i>Spiniferites/Achomosphaera</i> spp., <i>Reticulatosphaera actinocoronata</i>, <i>Operculodinium centrocarpum</i>, and <i>Melitasphaeridium choanophorum</i>. Furthermore, a continuous succession of Early Miocene–Late Miocene diagnostic dinoflagellate cyst events was recorded for the first time from the Península Valdés region. Eight diagnostic events of highest occurrences (HOs) of dinoflagellate cyst taxa are identified. These bioevents allowed a subdivision of the sedimentary succession into two well-defined stratigraphic sections: Early to Middle Miocene (Burdigalian–Langhian/probably Serravalian, 430/425–330/325 m) based on the HOs of <i>Emmetrocysta urnaformis</i>, <i>Cannosphaeropsis quattrocchiae</i>, <i>Cousteaudinium auybriae</i>, and <i>Cleistosphaeridium ancyreum</i>, and Late Miocene (Tortonian–Messinian, between 175–170 and 80/85 m) based on the HOs of <i>Labyrinthodinium truncatum</i> subsp. <i>truncatum</i>, <i>Operculodinium piaseckii</i>, and <i>Reticulatosphaera actinocoronata</i>. The ranges of these taxa are compared with well-documented information on Neogene dinoflagellate cysts recorded from different sites across the North and South Atlantic Ocean and adjacent seas. In general, the dinoflagellate cyst assemblages, as well as the selected diagnostic taxa, exhibit a clear similarity to those of the Northern Hemisphere. The only exception is <i>Hystrichokolpoma rigaudiae</i>, which is asynchronous, possibly indicating local paleoenvironmental conditions.
DOI: 10.6084/m9.figshare.22801159.v2
title: Miocene dinoflagellate cyst biostratigraphy of the Península Valdés, Patagonia, Argentina

description: The present work documents the stratigraphic distribution of dinoflagellate cysts from the upper part (60–585 m) of the YPF.Ch. PV. es-1 borehole, Península Valdés, Argentina. The assemblages exhibit a relatively moderate to low diversity. Most samples are characterized by frequent to abundant taxa of the order Gonyaulacales, such as <i>Spiniferites/Achomosphaera</i> spp., <i>Reticulatosphaera actinocoronata</i>, <i>Operculodinium centrocarpum</i>, and <i>Melitasphaeridium choanophorum</i>. Furthermore, a continuous succession of Early Miocene–Late Miocene diagnostic dinoflagellate cyst events was recorded for the first time from the Península Valdés region. Eight diagnostic events of highest occurrences (HOs) of dinoflagellate cyst taxa are identified. These bioevents allowed a subdivision of the sedimentary succession into two well-defined stratigraphic sections: Early to Middle Miocene (Burdigalian–Langhian/probably Serravalian, 430/425–330/325 m) based on the HOs of <i>Emmetrocysta urnaformis</i>, <i>Cannosphaeropsis quattrocchiae</i>, <i>Cousteaudinium auybriae</i>, and <i>Cleistosphaeridium ancyreum</i>, and Late Miocene (Tortonian–Messinian, between 175–170 and 80/85 m) based on the HOs of <i>Labyrinthodinium truncatum</i> subsp. <i>truncatum</i>, <i>Operculodinium piaseckii</i>, and <i>Reticulatosphaera actinocoronata</i>. The ranges of these taxa are compared with well-documented information on Neogene dinoflagellate cysts recorded from different sites across the North and South Atlantic Ocean and adjacent seas. In general, the dinoflagellate cyst assemblages, as well as the selected diagnostic taxa, exhibit a clear similarity to those of the Northern Hemisphere. The only exception is <i>Hystrichokolpoma rigaudiae</i>, which is asynchronous, possibly indicating local paleoenvironmental conditions.
DOI: 10.6084/m9.figshare.22801159.v1
title: Miocene dinoflagellate cyst biostratigraphy from the Península Valdés, Patagonia, Argentina

description: The present work documents the stratigraphic distribution of dinoflagellate cysts from the upper part (60-585 m) of the YPF.Ch. PV. es-1 borehole, Península Valdés, Argentina. The assemblages exhibit a relatively moderate to low diversity. Most samples are characterized by frequent to abundant taxa of the order Gonyaulacales, such as <i>Spiniferites/Achomosphaera</i> spp., <i>Reticulatosphaera actinocoronata</i>, <i>Operculodinium centrocarpum</i>, and <i>Melitasphaeridium choanophorum</i>. Furthermore, a continuous succession of Lower Miocene-Upper Miocene diagnostic dinoflagellate cyst events was recorded for the first time from the Península Valdés region. Eight diagnostic events of highest occurrences (HOs) of dinoflagellate taxa are identified. These bioevents allowed a subdivision of the sedimentary succession into two well-defined stratigraphic sections: Lower to Middle Miocene (Burdigalian-Langhian/probably Serravalian, 430/425–330/325 m) based on the HOs of <i>Emmetrocysta urnaformis</i>, <i>Cannosphaeropsis quattrocchiae</i>, <i>Cousteadinium auybriae</i>, and <i>Cleistosphaeridium ancyreum</i>, and Upper Miocene (Tortonian-Messinian, between 175-170 and 80/85m) based on the HOs of <i>Labyrinthodinium truncatum</i> subsp. <i>truncatum</i>, <i>Operculodinium piaseckii</i>, and <i>Reticulatosphaera actinocoronata</i>. The range of these taxa is compared with well-documented information on Neogene dinoflagellate cysts recorded from different sites across the North and South Atlantic Oceans and adjacent seas. In general, the dinoflagellate cyst assemblages, as well as the selected diagnostic taxa, exhibits a clear similarity with those of the Northern Hemisphere. The only exception is <i>Hystrichokolpoma rigaudiae</i>, which is asynchronous, possibly indicating local paleoenvironmental conditions.
DOI: 10.6084/m9.figshare.23726126
title: Supp_information.7z from Dynamic evolution of size and colour in the highly specialized Zodarion ant-eating spiders

description: Ecological specialists constitute relevant case studies for understanding the mechanisms, potential and limitations of evolution. The species-rich and strictly myrmecophagous spiders of the genus <i>Zodarion</i> show diversified defence mechanisms, including myrmecomorphy of different ant species and nocturnality. Using Hybridization Capture Using RAD Probes (hyRAD), a phylogenomic technique designed for sequencing poorly preserved specimens, we reconstructed a phylogeny of <i>Zodarion</i> using 52 (approx. a third of the nominal) species that cover its phylogenetic and distributional diversity. We then estimated the evolution of body size and colour, traits that have diversified noticeably and are linked to defence mechanisms, across the group. Our genomic matrix of 300 loci led to a well-supported phylogenetic hypothesis that uncovered two main clades inside <i>Zodarion</i>. Ancestral state estimation revealed the highly dynamic evolution of body size and colour across the group, with multiple transitions and convergences in both traits, which we propose is likely indicative of multiple transitions in ant specialization across the genus. Our study will allow the informed targeted selection of <i>Zodarion</i> taxa of special interest for research into the group's remarkable adaptations to ant specialization. It also exemplifies the utility of hyRAD for phylogenetic studies using museum material.
DOI: 10.6084/m9.figshare.20489715.v1
title: Supporting data for "Metabolic trait means but not correlations differ among fungal endophytes isolated from the same plant species"

description: All raw images, measurement data, phylogenetic trees and scripts associated with the manuscript "Trait means but not trait correlations underpin metabolic variation among closely related fungal endophytes from the same plant species"
DOI: 10.6084/m9.figshare.23726091
title: <strong>Application of Modified VIKOR Method in Wastewater Reuse (Case Study: Shahreza City)</strong>

description: Data For a Research article
DOI: 10.6084/m9.figshare.23726091.v1
title: <strong>Application of Modified VIKOR Method in Wastewater Reuse (Case Study: Shahreza City)</strong>

description: Data For a Research article
DOI: 10.6084/m9.figshare.23726223
title: PCR示范数据

description: 示范数据 <br>
DOI: 10.5517/ccdc.csd.cc2fxprt
title: CCDC 2261907: Experimental Crystal Structure Determination

description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxpsv
title: CCDC 2261908: Experimental Crystal Structure Determination

description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxptw
title: CCDC 2261909: Experimental Crystal Structure Determination

description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fxpwy
title: CCDC 2261911: Experimental Crystal Structure Determination

description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: Related Article: Nazaret Moreno-Rodriguez, L. Gabriel Borrego, Rocío Recio, Victoria Valdivia, M. Carmen Nicasio, Eleuterio Álvarez, Noureddine Khiar, Inmaculada Fernández|2023|Org.Biomol.Chem.|21|5827|doi:10.1039/D3OB00816A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23726231
title: S4. Fitting model candidates to high-fidelity D<sup>3j</sup> datasets from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix illustrates the process of fitting various parameterisations of the SE<sup>i</sup>I<sup>j</sup>R model (M<sup>1j</sup> & M<sup>3j</sup>) to high-fidelity D<sup>3j</sup> incidence reports. We mean by parameterisation the decision of categorising parameters as either unknown or assumed. For the unknown parameters, we construct prior distributions, which will be eventually updated in light of the data via HMC sampling, resulting in a posterior distribution. On the other hand, assumed parameters are fixed at their true values.
DOI: 10.6084/m9.figshare.23726231.v1
title: S4. Fitting model candidates to high-fidelity D<sup>3j</sup> datasets from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix illustrates the process of fitting various parameterisations of the SE<sup>i</sup>I<sup>j</sup>R model (M<sup>1j</sup> & M<sup>3j</sup>) to high-fidelity D<sup>3j</sup> incidence reports. We mean by parameterisation the decision of categorising parameters as either unknown or assumed. For the unknown parameters, we construct prior distributions, which will be eventually updated in light of the data via HMC sampling, resulting in a posterior distribution. On the other hand, assumed parameters are fixed at their true values.
DOI: 10.6084/m9.figshare.23726234.v1
title: S2. Fitting model candidates to high-fidelity D<sup>1j</sup> datasets from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix illustrates the process of fitting various parameterisations of the SE<sup>1</sup>I<sup>j</sup>R model (M<sup>1j</sup>) to high-fidelity D<sup>1j</sup> incidence reports. We mean by parameterisation the decision of categorising model parameters as either unknown or assumed. For the unknown parameters, we construct prior distributions, which will be eventually updated in light of the data via HMC sampling, resulting in a posterior distribution. On the other hand, assumed parameters are fixed at their true values.
DOI: 10.6084/m9.figshare.23726234
title: S2. Fitting model candidates to high-fidelity D<sup>1j</sup> datasets from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix illustrates the process of fitting various parameterisations of the SE<sup>1</sup>I<sup>j</sup>R model (M<sup>1j</sup>) to high-fidelity D<sup>1j</sup> incidence reports. We mean by parameterisation the decision of categorising model parameters as either unknown or assumed. For the unknown parameters, we construct prior distributions, which will be eventually updated in light of the data via HMC sampling, resulting in a posterior distribution. On the other hand, assumed parameters are fixed at their true values.
DOI: 10.6084/m9.figshare.23726237
title: S6. Sensitivity Analysis from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix aims to illustrate the performance of the alternative parameterisation under various transmissibility levels (ℜ<sub>0</sub>) and mean generation times. For simplicity, we restrict the SE<sup>i</sup>I<sup>j</sup>R to four instances (i = 1, and j = {1,2,3,4}) for data generation and fitting.
DOI: 10.6084/m9.figshare.23726237.v1
title: S6. Sensitivity Analysis from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix aims to illustrate the performance of the alternative parameterisation under various transmissibility levels (ℜ<sub>0</sub>) and mean generation times. For simplicity, we restrict the SE<sup>i</sup>I<sup>j</sup>R to four instances (i = 1, and j = {1,2,3,4}) for data generation and fitting.
DOI: 10.6084/m9.figshare.23726240
title: S1. Synthetic data and model candidates from Anchoring the mean generation time in the SEIR to mitigate biases in ℜ<sub>0</sub> estimates due to uncertainty in the distribution of the epidemiological delays

description: This appendix documents in a reproducible manner the generation of the instruments employed to carry out the inference study presented in the main text. By instruments, we refer to the synthetic incidence reports and the models used to fit them. Both instruments are the product of a common data generating process.