cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9wyjpnwghk.1
title: Porosity, openness, and exposure: Identification of underlying factors associated with semi-outdoor spaces’ environmental performance and clustering in tropical high-density Singapore: Supplementary Materials

description: The following data is Supplementary Material of the following manuscript: "Porosity, openness, and exposure: Identification of underlying factors associated with semi-outdoor spaces’ environmental performance and clustering in tropical high-density Singapore".
DOI: 10.5281/zenodo.5718760
title: High-resolution (3-km) ensemble WRF/WRF-Hydro simulation results for HRB, 2008-2011.

description: The dataset stores the model results from the published paper of https://doi.org/10.1007/s00382-021-06044-9. It is used for personal archive of the simulation results. WRF and WRF-Hydro simulation with PBL schemes: YSU, MYJ, ACM2. With Tagging result, with 3D atmosphere variable for summer time. Calculated Water budgets in CSV.
DOI: 10.5281/zenodo.5718759
title: High-resolution (3-km) ensemble WRF/WRF-Hydro simulation results for HRB, 2008-2011.

description: The dataset stores the model results from the published paper of https://doi.org/10.1007/s00382-021-06044-9. It is used for personal archive of the simulation results. WRF and WRF-Hydro simulation with PBL schemes: YSU, MYJ, ACM2. With Tagging result, with 3D atmosphere variable for summer time. Calculated Water budgets in CSV.
DOI: 10.5281/zenodo.6412722
title: Modeling output for "The dynamic atmospheric and aeolian environment of Jezero crater, Mars"

description: This dataset contains meso- and microscale numerical modeling output supporting the findings presented in the paper, "Newman et al., The dynamic atmospheric and aeolian environment of Jezero crater, Mars, Science Advances"
DOI: 10.5281/zenodo.6412721
title: Modeling output for "The dynamic atmospheric and aeolian environment of Jezero crater, Mars"

description: This dataset contains meso- and microscale numerical modeling output supporting the findings presented in the paper, "Newman et al., The dynamic atmospheric and aeolian environment of Jezero crater, Mars, Science Advances"
DOI: 10.5281/zenodo.6412811
title: Simulated astrometric binary systems

description: Simulated systems analyzed in Penoyre, Belokurov & Evans 2022. As detailed in the paper we generate 100,000 random binary configurations with 100 pc and simulate each as: a single star (l=q=0) a stellar binary (l and 1 generated by drawing a second random star, l&lt;1 always) a solar mass black hole (l=0) a three solar mass black hole a ten solar mass black hole
DOI: 10.5281/zenodo.6412810
title: Simulated astrometric binary systems

description: Simulated systems analyzed in Penoyre, Belokurov & Evans 2022. As detailed in the paper we generate 100,000 random binary configurations with 100 pc and simulate each as: a single star (l=q=0) a stellar binary (l and 1 generated by drawing a second random star, l&lt;1 always) a solar mass black hole (l=0) a three solar mass black hole a ten solar mass black hole
DOI: 10.5281/zenodo.5718799
title: ECMWF operational analysis data for driven the WRF model in HRB

description: All the ECMWF operational analysis data forcing data (2008-2012) related to the thesis (https://opus.bibliothek.uni-augsburg.de/opus4/frontdoor/deliver/index/docId/81907/file/PhD_Zhang.pdf)
DOI: 10.5281/zenodo.5718798
title: ECMWF operational analysis data for driven the WRF model in HRB

description: All the ECMWF operational analysis data forcing data (2008-2012) related to the thesis (https://opus.bibliothek.uni-augsburg.de/opus4/frontdoor/deliver/index/docId/81907/file/PhD_Zhang.pdf)
DOI: 10.5281/zenodo.6412838
title: Diurnal Energy Fluxes simulated by coupled WRF-Hydro in Heihe basin

description: WRF and WRF-Hydro simulated results for Heihe River basin. Data contains simulated diurnal energy fluxes related to the published Journal paper: https://doi.org/10.1002/hyp.14454
DOI: 10.5281/zenodo.6412837
title: Diurnal Energy Fluxes simulated by coupled WRF-Hydro in Heihe basin

description: WRF and WRF-Hydro simulated results for Heihe River basin. Data contains simulated diurnal energy fluxes related to the published Journal paper: https://doi.org/10.1002/hyp.14454
DOI: 10.5281/zenodo.6410796
title: Detection results of NMC particles in composite battery cathodes

description: This dataset shows more examples of the NMC particles detection overlayed with the original images in composite battery cathodes. <pre><code>@journal{li2022networkevolution, title={Dynamics of particle network in composite battery cathodes}, author={Li, Jizhou and Sharma, Nikhil and Jiang, Zhisen and Yang, Yang and Monaco, Federico and Xu, Zhengrui and Hou, Dong and Ratner, Daniel and Pianetta, Piero and Cloetens, Peter and Lin, Feng and Zhao, Kejie and Liu, Yijin}, year={2022}, journal={Science} }</code></pre>
DOI: 10.5281/zenodo.6410795
title: Detection results of NMC particles in composite battery cathodes

description: This dataset shows more examples of the NMC particles detection overlayed with the original images in composite battery cathodes. <pre><code>@journal{li2022networkevolution, title={Dynamics of particle network in composite battery cathodes}, author={Li, Jizhou and Sharma, Nikhil and Jiang, Zhisen and Yang, Yang and Monaco, Federico and Xu, Zhengrui and Hou, Dong and Ratner, Daniel and Pianetta, Piero and Cloetens, Peter and Lin, Feng and Zhao, Kejie and Liu, Yijin}, year={2022}, journal={Science} }</code></pre>
DOI: 10.18112/openneuro.ds003717.v1.0.1
title: Visual and audiovisual speech perception associated with increased functional connectivity between sensory and motor regions
DOI: 10.6084/m9.figshare.19516660
title: Data_for_figs.zip

description: Glider and mooring data
DOI: 10.6084/m9.figshare.19516660.v1
title: Data_for_figs.zip

description: Glider and mooring data
DOI: 10.6084/m9.figshare.16943821.v5
title: Data & Scripts FigureS1

description: Data and scripts to generate Supplementary Figure 1.<br>
DOI: 10.6084/m9.figshare.16943812
title: Data & Scripts Figure 1

description: Data and scripts to generate Figure 1<br>
DOI: 10.6084/m9.figshare.16943812.v9
title: Data & Scripts Figure 1

description: Data and scripts to generate Figure 1<br>
DOI: 10.6084/m9.figshare.16943812.v8
title: Data & Scripts Figure 3

description: Data and scripts to generate Figure 3<br>
DOI: 10.5281/zenodo.6392227
title: Supplementary Figures, Files and Datasets: Reduction of Metastasis via Epigenetic Modulation in a Murine Model of Metastatic Triple Negative Breast Cancer (TNBC)

description: *denotes authors contributed equally to this work FileS1_Figures_Proofread.pdf: (Updated) Supplementary Figures (Figure S1: RNA-sequencing experimental design; Figure S2: Experiments measuring proliferation between drug-treated and control conditions indicate no significant difference 6 hrs. after scratch; Figure S3: Effect of 4SC-202 treatment on 4T1 tumor volume in mice; Figure S4: Differential expression between 4SC-202- and Vorinostat-treated 4T1 tumors; Figure S5: Top underexpressed differentially expressed genes 4SC-202 vs Control; Figure S6: HDACi target genes are not differentially expressed in RNA-sequencing data from 4SC-202-treated mice relative to control mice; Figure S7: Differential expression and expression of genes implicated gene ontology biological processes of interest; Figure S8: IPA visualization of the Regulation of Epithelial Mesenchymal Transition By Growth Factors Pathway emphasizing influence of 4SC-202-induced consensus DEGs; Figure S9: 4SC-202 modulates gene networks related to Cancer, Endocrine System Disorders, and Organismal Injury and Abnormalities; Figure S10: 4SC-202 modulates gene networks related to Cancer, Cellular Movement, and Organismal Injury and Abnormalities; Figure S11: 4SC-202 modulates gene networks related to Cell-mediated Immune Response, Cellular Movement, and Hematological System Development and Function; Figure S12: 4SC-202 differentially modulates gene networks related to Cellular Movement, Hematological System Development and Function, and Immune Cell Trafficking relative to Vorinostat); File S2: DAVID 4SC vs. Control 70DEG results: DAVID Annotation 4SC-202 vs Control 70 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202-induced, consensus differentially expressed genes.; File S3: DAVID 4SC vs. Vori 33 DEGs results: DAVID Annotation 4SC-202 vs Control 33 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202 versus Vorinostat consensus differentially expressed genes.; File S4: IPA 70 All Results: IPA Canonical Pathways Enrichment 70 DEGs: Full Ingenuity Pathway Analysis (IPA) canonical pathways enrichment results for the 4SC-202-induced, consensus differentially expressed genes.; File S5: IPA 33 Summary: Ingenuity Pathway Analysis (IPA) summary of the enrichment results for the 4SC-202-induced, consensus differentially expressed genes against Vorinostat.; File S6: Experiment RIN Numbers: RNA extraction quality control step, one of the various steps of quality control within the RNA-sequencing workflow. These RNA Integrity numbers are from the Agilent 2100 Bioanalyzer that looks for RNA contamination and degradation.; File S7: 4SC vs. Control all DEGs: Workflow results including all DEGs for 4SC-202 vs Control: Full excel file that contains all of the DEGs from the results of all workflows for 4SC-202.
DOI: 10.5281/zenodo.5818062
title: Supplementary Figures, Files and Datasets: Reduction of Metastasis via Epigenetic Modulation in a Murine Model of Metastatic Triple Negative Breast Cancer (TNBC)

description: *denotes authors contributed equally to this work FileS1_Figures_Proofread.pdf: (Updated) Supplementary Figures (Figure S1: RNA-sequencing experimental design; Figure S2: Experiments measuring proliferation between drug-treated and control conditions indicate no significant difference 6 hrs. after scratch; Figure S3: Effect of 4SC-202 treatment on 4T1 tumor volume in mice; Figure S4: Differential expression between 4SC-202- and Vorinostat-treated 4T1 tumors; Figure S5: Top underexpressed differentially expressed genes 4SC-202 vs Control; Figure S6: HDACi target genes are not differentially expressed in RNA-sequencing data from 4SC-202-treated mice relative to control mice; Figure S7: Differential expression and expression of genes implicated gene ontology biological processes of interest; Figure S8: IPA visualization of the Regulation of Epithelial Mesenchymal Transition By Growth Factors Pathway emphasizing influence of 4SC-202-induced consensus DEGs; Figure S9: 4SC-202 modulates gene networks related to Cancer, Endocrine System Disorders, and Organismal Injury and Abnormalities; Figure S10: 4SC-202 modulates gene networks related to Cancer, Cellular Movement, and Organismal Injury and Abnormalities; Figure S11: 4SC-202 modulates gene networks related to Cell-mediated Immune Response, Cellular Movement, and Hematological System Development and Function; Figure S12: 4SC-202 differentially modulates gene networks related to Cellular Movement, Hematological System Development and Function, and Immune Cell Trafficking relative to Vorinostat); File S2: DAVID 4SC vs. Control 70DEG results: DAVID Annotation 4SC-202 vs Control 70 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202-induced, consensus differentially expressed genes.; File S3: DAVID 4SC vs. Vori 33 DEGs results: DAVID Annotation 4SC-202 vs Control 33 DEGs: Full functional annotation clustering results from DAVID Bioinformatics Resource for the 4SC-202 versus Vorinostat consensus differentially expressed genes.; File S4: IPA 70 All Results: IPA Canonical Pathways Enrichment 70 DEGs: Full Ingenuity Pathway Analysis (IPA) canonical pathways enrichment results for the 4SC-202-induced, consensus differentially expressed genes.; File S5: IPA 33 Summary: Ingenuity Pathway Analysis (IPA) summary of the enrichment results for the 4SC-202-induced, consensus differentially expressed genes against Vorinostat.; File S6: Experiment RIN Numbers: RNA extraction quality control step, one of the various steps of quality control within the RNA-sequencing workflow. These RNA Integrity numbers are from the Agilent 2100 Bioanalyzer that looks for RNA contamination and degradation.; File S7: 4SC vs. Control all DEGs: Workflow results including all DEGs for 4SC-202 vs Control: Full excel file that contains all of the DEGs from the results of all workflows for 4SC-202.
DOI: 10.5281/zenodo.6412692
title: Characteristically repeating earthquake catalog for San Juan Bautista - Parkfield region

description: Characteristically repeating earthquake catalog for San Juan Bautista - Parkfield region
DOI: 10.5281/zenodo.6412691
title: Characteristically repeating earthquake catalog for San Juan Bautista - Parkfield region

description: Characteristically repeating earthquake catalog for San Juan Bautista - Parkfield region
DOI: 10.17909/gajx-kf45
title: The Hubble Space Telescope UV Legacy Survey of Galactic Globular Clusters. XXIII

description: Data used to obtain high-precision proper motions
DOI: 10.34740/kaggle/dsv/3407887
title: ECB speeches etc. 1997 to 2022-04-04
DOI: 10.22003/xfel.eu-data-003217-00
title: Magnetic and structural dynamics interplay in Dysprosium upon pulsed magnetic field
DOI: 10.6084/m9.figshare.19158689
title: Predicted Coronavirus Nsp5 Protease Cleavage Sites in the Human Proteome - supplementary data, tables, and figures

description: <b>Additional File 1:</b> This includes Supplementary Tables S1-S16 <b> </b> <b>Additional File 2:</b> human_all_proteins_netcorona.txt (108MB) This is the raw data output by NetCorona following analysis of the “All Human Proteins” dataset <b>Additional File 3:</b> human_one_gene_netcorona.txt (46MB) This is the raw data output by NetCorona following analysis of the “One Protein Per Gene” dataset <b>Additional File 4:</b> dataset human_w_PDB_netcorona.txt (16MB) This is the raw data output by NetCorona following analysis of the “Proteins With PDB” dataset <b>Additional File 5: Figure S1</b> interaction scores vs max NetCorona score.pdf Nsp5-human protein interaction data from Samavarchi-Tehrani <i>et al.</i>, plotted against the maximum NetCorona score for human proteins from the “One Protein Per Gene” dataset. <b>Additional File 6:</b> matching predicted motif to PDB.xlsx Raw data displaying how predicted cleaved motifs were matched to a PDB file <b>Additional File 7:</b> <b>Figure S2</b> ASA vs NetCorona score.pdf Accessible surface area (ASA) of a predicted and known Nsp5 motifs plotted against NetCorona scores, with data published by others highlighted, and the Nsp5 access score cut-off displayed.
DOI: 10.6084/m9.figshare.19158689.v3
title: Predicted Coronavirus Nsp5 Protease Cleavage Sites in the Human Proteome - supplementary data, tables, and figures

description: <b>Additional File 1:</b> This includes Supplementary Tables S1-S16 <b> </b> <b>Additional File 2:</b> human_all_proteins_netcorona.txt (108MB) This is the raw data output by NetCorona following analysis of the “All Human Proteins” dataset <b>Additional File 3:</b> human_one_gene_netcorona.txt (46MB) This is the raw data output by NetCorona following analysis of the “One Protein Per Gene” dataset <b>Additional File 4:</b> dataset human_w_PDB_netcorona.txt (16MB) This is the raw data output by NetCorona following analysis of the “Proteins With PDB” dataset <b>Additional File 5: Figure S1</b> interaction scores vs max NetCorona score.pdf Nsp5-human protein interaction data from Samavarchi-Tehrani <i>et al.</i>, plotted against the maximum NetCorona score for human proteins from the “One Protein Per Gene” dataset. <b>Additional File 6:</b> matching predicted motif to PDB.xlsx Raw data displaying how predicted cleaved motifs were matched to a PDB file <b>Additional File 7:</b> <b>Figure S2</b> ASA vs NetCorona score.pdf Accessible surface area (ASA) of a predicted and known Nsp5 motifs plotted against NetCorona scores, with data published by others highlighted, and the Nsp5 access score cut-off displayed.
DOI: 10.5281/zenodo.6412864
title: Sphingolipids are involved in Pieris brassicae egg-induced cell death in Arabidopsis thaliana

description: This table contains mean + SEM values of sphingolipid levels by LC-MS analysis in Arabidopsis thaliana (wild-type and mutant lines) and Brassica nigra (wild-type) in response to egg extract of Pieris brassicae, as well as P-values for selected comparisons by Welsch t-test. These data were used for Fig. 7 and Fig. 8 of Groux et al. 2022
DOI: 10.5281/zenodo.5948704
title: Sphingolipids are involved in Pieris brassicae egg-induced cell death in Arabidopsis thaliana

description: This table contains mean + SEM values of sphingolipid levels by LC-MS analysis in Arabidopsis thaliana (wild-type and mutant lines) and Brassica nigra (wild-type) in response to egg extract of Pieris brassicae, as well as P-values for selected comparisons by Welsch t-test. These data were used for Fig. 7 and Fig. 8 of Groux et al. 2022
DOI: 10.5281/zenodo.6412981
title: French verbal frequencies in the Open Subtitle corpus

description: This repository provides frequencies for French verbal paradigm cells in the French Open Subtitles Corpus.
description: This work was partially funded by a British Academy International Newton Fellowship (reference: NIF23\100218)
DOI: 10.5281/zenodo.5952953
title: Dataset accompanying manuscript "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope"

description: Raw images and microscope calibration metadata for reconstruction of datasets presented in Fig. 1 and Fig. 3 of "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope". Notebooks demonstrating steps in the label-free and fluorescence anisotropy reconstruction pipelines can be found at https://github.com/mehta-lab/miPolScope.
description: This research is supported by Chan Zuckerberg Biohub.
DOI: 10.5281/zenodo.5952952
title: Dataset accompanying manuscript "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope"

description: Raw images and microscope calibration metadata for reconstruction of datasets presented in Fig. 1 and Fig. 3 of "Correlative imaging of spatio-angular dynamics of biological systems with multimodal instant polarization microscope". Notebooks demonstrating steps in the label-free and fluorescence anisotropy reconstruction pipelines can be found at https://github.com/mehta-lab/miPolScope.
description: This research is supported by Chan Zuckerberg Biohub.
DOI: 10.25345/c57d2qb6n
title: MassIVE MSV000089195 - GNPS-Std Phe pour yohan france
title: Std from gnps blablablablablablablablablablablabalbalba balbalbalab
DOI: 10.6084/m9.figshare.3761562.v2178
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.6084/m9.figshare.19516792
title: Pericardial effusion in GCA

description: Statistical data of pericardial effusion in GCA<br>
DOI: 10.6084/m9.figshare.19516792.v1
title: Pericardial effusion in GCA

description: Statistical data of pericardial effusion in GCA<br>
DOI: 10.5281/zenodo.6413017
title: Nivel de polen por provincia y tipo de planta

description: Práctica de web scraping de la asignatura "Tipología y Ciclo de Vida de los Datos" del Master Universitario "Data Scicence" de la UOC. Niveles de polen en España por provincia y tipo de polen.
DOI: 10.5281/zenodo.6391606
title: Nivel de polen por provincia y tipo de planta

description: Práctica de web scraping de la asignatura "Tipología y Ciclo de Vida de los Datos" del Master Universitario "Data Scicence" de la UOC. Niveles de polen en España por provincia y tipo de polen.
DOI: 10.5066/p91ic3wm
title: Urban landcover differentially drives day and nighttime air temperature across a semi-arid city

description: Semi-arid urban environments are undergoing an increase in air temperatures, both in average temperatures and in the frequency and intensity of extreme heat events. Within cities, different varieties of urban landcovers (ULC) and their densities influence local air temperatures, either mitigating or increasing heat. Currently, understanding how various combinations of ULCs influence air temperature at the block to neighborhood scale is limited due to the complexities of urban energy balances at small scales. We quantified how ULC influences air temperature at 60 m resolution for day and nighttime climate normals and heatwaves, by integrating data from microclimate temperature sensor networks and high-resolution (1 m2) ULC for Denver Colorado’s urban core. We derived ULC drivers of air temperature using a structural equation model, and projected urban heat scenarios of climate normals and heatwaves throughout the extent of urban Denver. We found that, in conjunction with other ULCs, urban tree canopy reduced daytime air temperatures (-0.026° C per % cover), and the combination of impervious surfaces and buildings increased daytime air temperature (0.021° C per % cover). During night hours, irrigated turf and tree canopy reduced temperatures more than the daytime (-0.038° C per % cover). Overall, ULC drove ~17% and 25% of local air temperature during the day and night respectively, with regional factors making up the rest. During heatwaves, ULC influence on daytime air temperatures was strengthened. The results provided evidence showing daytime urban heat mitigation is due to increases in surface shading and transpiration from tree canopies and nighttime heat mitigation in a semi-arid environment is primarily due to transpiration-derived cooling. Our findings inform urban planners seeking to identify potential hot and cool spots within a semi-arid city and mitigate high urban air temperatures through using ULC withing larger urban climate mitigation strategies.
DOI: 10.25345/c53n20j2w
title: MassIVE MSV000089196 - Static cultivation of Pseudomonas aeruginosa PA14 in BHI
title: Analysis of Pseudomonas aeruginosa transcriptomes during infection has identified a gene, PA1414 (PAO1 locus tag), that is highly expressed in various types of human infection. This gene was also found to be highly induced under low oxygen conditions, including anaerobic condition as well as static cultivation. Here we compared the proteomes of P. aeruginosa PA14 and the PA1414 mutant during static cultivation in Brain Heart Infusion (BHI) broth supplemented with 50 mM nitrate to identify the pathways regulated by PA1414.
DOI: 10.25345/c5000041s
title: MassIVE MSV000089197 - Anaerobic cultivation of Pseudomonas aeruginosa PA14 in BHI
title: Analysis of Pseudomonas aeruginosa transcriptomes during infection has identified a gene, PA1414 (PAO1 locus tag), that is highly expressed in various types of human infection. This gene was also found to be highly induced under low oxygen conditions, including anaerobic condition as well as static cultivation. Here we compared the proteomes of P. aeruginosa PA14 and the PA1414 mutant during anaerobic cultivation in Brain Heart Infusion (BHI) broth supplemented with 50 mM nitrate to identify the pathways regulated by PA1414.