cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3561897
title: Appendix A. Posterior sampling distribution of the ratio of individual and site-level dispersion constants for hierarchical biomass model.

description: Posterior sampling distribution of the ratio of individual and site-level dispersion constants for hierarchical biomass model.
DOI: 10.6084/m9.figshare.3561900.v1
title: Appendix C. Fourteen annual networks of cavity-nesting vertebrates, 1998–2011.

description: Fourteen annual networks of cavity-nesting vertebrates, 1998–2011.
DOI: 10.6084/m9.figshare.3561897.v1
title: Appendix A. Posterior sampling distribution of the ratio of individual and site-level dispersion constants for hierarchical biomass model.

description: Posterior sampling distribution of the ratio of individual and site-level dispersion constants for hierarchical biomass model.
DOI: 10.6084/m9.figshare.3561894
title: Appendix B. Simulation test of the gamma-gamma hierarchical biomass model.

description: Simulation test of the gamma-gamma hierarchical biomass model.
DOI: 10.6084/m9.figshare.3561891
title: Appendix C. Data on germination of seeds at different light levels and collected from plants grown at different light levels.

description: Data on germination of seeds at different light levels and collected from plants grown at different light levels.
DOI: 10.6084/m9.figshare.3561891.v1
title: Appendix C. Data on germination of seeds at different light levels and collected from plants grown at different light levels.

description: Data on germination of seeds at different light levels and collected from plants grown at different light levels.
DOI: 10.6084/m9.figshare.3561888
title: Appendix D. Cross-validated posterior predictive distribution for the gamma-gamma hierarchical biomass model.

description: Cross-validated posterior predictive distribution for the gamma-gamma hierarchical biomass model.
DOI: 10.6084/m9.figshare.3561888.v1
title: Appendix D. Cross-validated posterior predictive distribution for the gamma-gamma hierarchical biomass model.

description: Cross-validated posterior predictive distribution for the gamma-gamma hierarchical biomass model.
DOI: 10.6084/m9.figshare.3561885
title: Appendix E. Details on model development, particularly working with the gamma and negative binomial parameterizations in JAGS, plus pseudo-code for generating cross-validated posterior predictions.

description: Details on model development, particularly working with the gamma and negative binomial parameterizations in JAGS, plus pseudo-code for generating cross-validated posterior predictions.
DOI: 10.6084/m9.figshare.3561885.v1
title: Appendix E. Details on model development, particularly working with the gamma and negative binomial parameterizations in JAGS, plus pseudo-code for generating cross-validated posterior predictions.

description: Details on model development, particularly working with the gamma and negative binomial parameterizations in JAGS, plus pseudo-code for generating cross-validated posterior predictions.
DOI: 10.6084/m9.figshare.3561882
title: Supplement 1. R script files and data from both the field introduction and the mesocosm experiment to execute the models described in the manuscript and in Appendix E.

description: File List Gamma_Negbin_Fecund.R (MD5: 7cd8437e8cd555f777499ef6e3bc279e) -- # R code for fecundity predictions NegBinFecund.R (MD5: fd282a2e324e20d7529bf51d2d2e14ef) -- # R code for seed model Gamma_Biomass.R (MD5: 5926e4126625a807b86ebf3b48aa1b93) -- # R code for biomass model generalBAYESIANcode.R (MD5: bce9894d372872da18a3ee5305f571f5) -- # R code for functions used in above code garden.csv (MD5: 19d443db46af62e515e38ad07d8ee499) -- # Field introduction data light_exp_seed.csv (MD5: ac8be1d03af3befc0e1f32e8c5311af8) -- # Mesocosm data Description These files are provided to assist in reproduction of our modeling results using the statistical package R. The first supplement (Gamma_Negbin_Fecund) contains R code that jointly samples from the two data sets (garden.csv and light_exp_seed.csv) in order to create predictions of plant fecundity in the field. The hierarchical biomass model (Gamma_Biomass.R) and the seed production model (NegBinFecund.R) are also included separately.
DOI: 10.6084/m9.figshare.3561879
title: Appendix A. A summary of chemical and physical data for the five source lakes that contributed dispersers for this study and for mesocosms averaged across weeks of the experiment, and a graph illustrating the first two axes of a principle coordinates analysis of the plankton communities across the three dispersal treatments using compositional data collected on the last day of the experiment.

description: A summary of chemical and physical data for the five source lakes that contributed dispersers for this study and for mesocosms averaged across weeks of the experiment, and a graph illustrating the first two axes of a principle coordinates analysis of the plankton communities across the three dispersal treatments using compositional data collected on the last day of the experiment.
DOI: 10.6084/m9.figshare.3561879.v1
title: Appendix A. A summary of chemical and physical data for the five source lakes that contributed dispersers for this study and for mesocosms averaged across weeks of the experiment, and a graph illustrating the first two axes of a principle coordinates analysis of the plankton communities across the three dispersal treatments using compositional data collected on the last day of the experiment.

description: A summary of chemical and physical data for the five source lakes that contributed dispersers for this study and for mesocosms averaged across weeks of the experiment, and a graph illustrating the first two axes of a principle coordinates analysis of the plankton communities across the three dispersal treatments using compositional data collected on the last day of the experiment.
DOI: 10.6084/m9.figshare.3561876
title: Appendix A. Phylogeny data for the CBS and Wabikon plot.

description: Phylogeny data for the CBS and Wabikon plot.
DOI: 10.6084/m9.figshare.3561876.v1
title: Appendix A. Phylogeny data for the CBS and Wabikon plot.

description: Phylogeny data for the CBS and Wabikon plot.
DOI: 10.6084/m9.figshare.3561873
title: Appendix B. Details on the null communities.

description: Details on the null communities.
DOI: 10.6084/m9.figshare.3561873.v1
title: Appendix B. Details on the null communities.

description: Details on the null communities.
DOI: 10.6084/m9.figshare.3561870
title: Appendix C. Details on the analytical expression for Dpw and different competing hypotheses.

description: Details on the analytical expression for Dpw and different competing hypotheses.
DOI: 10.6084/m9.figshare.3561870.v1
title: Appendix C. Details on the analytical expression for Dpw and different competing hypotheses.

description: Details on the analytical expression for Dpw and different competing hypotheses.
DOI: 10.6084/m9.figshare.3561867
title: Appendix D. Detailed results on the phylogenetic and functional beta diversity.

description: Detailed results on the phylogenetic and functional beta diversity.
DOI: 10.6084/m9.figshare.3561867.v1
title: Appendix D. Detailed results on the phylogenetic and functional beta diversity.

description: Detailed results on the phylogenetic and functional beta diversity.
DOI: 10.6084/m9.figshare.3561864
title: Appendix A. Results of additional analyses and data regarding plant origin and relative frequency.

description: Results of additional analyses and data regarding plant origin and relative frequency.
DOI: 10.6084/m9.figshare.3561864.v1
title: Appendix A. Results of additional analyses and data regarding plant origin and relative frequency.

description: Results of additional analyses and data regarding plant origin and relative frequency.
DOI: 10.6084/m9.figshare.3561861
title: Appendix A. Multiplicative beta diversity and richness correlations with distance to the median (within sites).

description: Multiplicative beta diversity and richness correlations with distance to the median (within sites).
DOI: 10.6084/m9.figshare.3561861.v1
title: Appendix A. Multiplicative beta diversity and richness correlations with distance to the median (within sites).

description: Multiplicative beta diversity and richness correlations with distance to the median (within sites).
DOI: 10.6084/m9.figshare.3561858
title: Appendix A. Supplementary materials, including fire burning extent in the United States from 1926 to 2012, detailed results of indicator species analysis, cumulative distribution of understory species site occurrences, DBH class distribution of common trees, NMDS ordination of overstory, and relationship between increases in exotic species and biotic homogenization.

description: Supplementary materials, including fire burning extent in the United States from 1926 to 2012, detailed results of indicator species analysis, cumulative distribution of understory species site occurrences, DBH class distribution of common trees, NMDS ordination of overstory, and relationship between increases in exotic species and biotic homogenization.
DOI: 10.6084/m9.figshare.3561858.v1
title: Appendix A. Supplementary materials, including fire burning extent in the United States from 1926 to 2012, detailed results of indicator species analysis, cumulative distribution of understory species site occurrences, DBH class distribution of common trees, NMDS ordination of overstory, and relationship between increases in exotic species and biotic homogenization.

description: Supplementary materials, including fire burning extent in the United States from 1926 to 2012, detailed results of indicator species analysis, cumulative distribution of understory species site occurrences, DBH class distribution of common trees, NMDS ordination of overstory, and relationship between increases in exotic species and biotic homogenization.
DOI: 10.6084/m9.figshare.3561855
title: Appendix A. Analyses of temperature and grazer diversity effects on macroalgal biomass according to wave action.

description: Analyses of temperature and grazer diversity effects on macroalgal biomass according to wave action.
DOI: 10.6084/m9.figshare.3561855.v1
title: Appendix A. Analyses of temperature and grazer diversity effects on macroalgal biomass according to wave action.

description: Analyses of temperature and grazer diversity effects on macroalgal biomass according to wave action.
DOI: 10.6084/m9.figshare.3561852
title: Appendix B. Tests for differences in macroalgal assemblage structure among grazer diversity treatments.

description: Tests for differences in macroalgal assemblage structure among grazer diversity treatments.
DOI: 10.6084/m9.figshare.3561852.v1
title: Appendix B. Tests for differences in macroalgal assemblage structure among grazer diversity treatments.

description: Tests for differences in macroalgal assemblage structure among grazer diversity treatments.
DOI: 10.6084/m9.figshare.3561849
title: Appendix C. Relative contributions of macroalgal species to differences in assemblage structure.

description: Relative contributions of macroalgal species to differences in assemblage structure.
DOI: 10.6084/m9.figshare.3561849.v1
title: Appendix C. Relative contributions of macroalgal species to differences in assemblage structure.

description: Relative contributions of macroalgal species to differences in assemblage structure.
DOI: 10.6084/m9.figshare.3561846
title: Appendix D. Grazer–microalgal interaction strengths for grazer monocultures and the polyculture.

description: Grazer–microalgal interaction strengths for grazer monocultures and the polyculture.
DOI: 10.6084/m9.figshare.3561846.v1
title: Appendix D. Grazer–microalgal interaction strengths for grazer monocultures and the polyculture.

description: Grazer–microalgal interaction strengths for grazer monocultures and the polyculture.
DOI: 10.6084/m9.figshare.3561843
title: Appendix A. Mean monthly temperatures in spawning areas for four CR brook trout populations in 2010.

description: Mean monthly temperatures in spawning areas for four CR brook trout populations in 2010.
DOI: 10.6084/m9.figshare.3561843.v1
title: Appendix A. Mean monthly temperatures in spawning areas for four CR brook trout populations in 2010.

description: Mean monthly temperatures in spawning areas for four CR brook trout populations in 2010.
DOI: 10.6084/m9.figshare.3561840
title: Appendix B. Cape Race trout population census size (N) and the effective number of breeders (Nb) for 2011, and the relationship between Nb and Ne for five CR populations.

description: Cape Race trout population census size (N) and the effective number of breeders (Nb) for 2011, and the relationship between Nb and Ne for five CR populations.
DOI: 10.6084/m9.figshare.3561840.v1
title: Appendix B. Cape Race trout population census size (N) and the effective number of breeders (Nb) for 2011, and the relationship between Nb and Ne for five CR populations.

description: Cape Race trout population census size (N) and the effective number of breeders (Nb) for 2011, and the relationship between Nb and Ne for five CR populations.
DOI: 10.6084/m9.figshare.3561837
title: Appendix C. GLMM results to evaluate the effect of shipment date on mean trait values at CR.

description: GLMM results to evaluate the effect of shipment date on mean trait values at CR.
DOI: 10.6084/m9.figshare.3561837.v1
title: Appendix C. GLMM results to evaluate the effect of shipment date on mean trait values at CR.

description: GLMM results to evaluate the effect of shipment date on mean trait values at CR.
DOI: 10.6084/m9.figshare.3561834
title: Appendix D. GLMM results to evaluate the effect of temperature regime, population size (N or Nb), egg size, family size, and interactions on mean trait values at CR.

description: GLMM results to evaluate the effect of temperature regime, population size (N or Nb), egg size, family size, and interactions on mean trait values at CR.
DOI: 10.6084/m9.figshare.3561831
title: Appendix E. Directional Hypothesis: Absolute values of slopes between three temperature regimes in relation to N and Nb, Spearman’s correlations, and GLMM results to assess the magnitude of plasticity in relation to population size for early-life history traits at CR.

description: Directional Hypothesis: Absolute values of slopes between three temperature regimes in relation to N and Nb, Spearman’s correlations, and GLMM results to assess the magnitude of plasticity in relation to population size for early-life history traits at CR.
DOI: 10.6084/m9.figshare.3561834.v1
title: Appendix D. GLMM results to evaluate the effect of temperature regime, population size (N or Nb), egg size, family size, and interactions on mean trait values at CR.

description: GLMM results to evaluate the effect of temperature regime, population size (N or Nb), egg size, family size, and interactions on mean trait values at CR.
DOI: 10.6084/m9.figshare.3561831.v1
title: Appendix E. Directional Hypothesis: Absolute values of slopes between three temperature regimes in relation to N and Nb, Spearman’s correlations, and GLMM results to assess the magnitude of plasticity in relation to population size for early-life history traits at CR.

description: Directional Hypothesis: Absolute values of slopes between three temperature regimes in relation to N and Nb, Spearman’s correlations, and GLMM results to assess the magnitude of plasticity in relation to population size for early-life history traits at CR.
DOI: 10.6084/m9.figshare.3561828
title: Appendix F. Variable Hypothesis: Values of slopes between three temperature regimes in relation to N and Nb, GLMM results, and White’s test results to assess the variability of plasticity in relation to population size for early-life history traits at CR.

description: Variable Hypothesis: Values of slopes between three temperature regimes in relation to N and Nb, GLMM results, and White’s test results to assess the variability of plasticity in relation to population size for early-life history traits at CR.
DOI: 10.6084/m9.figshare.3561828.v1
title: Appendix F. Variable Hypothesis: Values of slopes between three temperature regimes in relation to N and Nb, GLMM results, and White’s test results to assess the variability of plasticity in relation to population size for early-life history traits at CR.

description: Variable Hypothesis: Values of slopes between three temperature regimes in relation to N and Nb, GLMM results, and White’s test results to assess the variability of plasticity in relation to population size for early-life history traits at CR.
DOI: 10.6084/m9.figshare.3561825
title: Appendix G. Means and CVs for early-life history traits for small vs. large CR populations.

description: Means and CVs for early-life history traits for small vs. large CR populations.
DOI: 10.6084/m9.figshare.3561825.v1
title: Appendix G. Means and CVs for early-life history traits for small vs. large CR populations.

description: Means and CVs for early-life history traits for small vs. large CR populations.
DOI: 10.6084/m9.figshare.3561822
title: Appendix H. GLMM effect size 95% confidence intervals (CIs) for the effect of predictor variables on the magnitude and variability of plasticity at CR.

description: GLMM effect size 95% confidence intervals (CIs) for the effect of predictor variables on the magnitude and variability of plasticity at CR.
DOI: 10.6084/m9.figshare.3561822.v1
title: Appendix H. GLMM effect size 95% confidence intervals (CIs) for the effect of predictor variables on the magnitude and variability of plasticity at CR.

description: GLMM effect size 95% confidence intervals (CIs) for the effect of predictor variables on the magnitude and variability of plasticity at CR.
DOI: 10.6084/m9.figshare.3561819
title: Appendix A. Phylogenetic tree methods, topological relationships, and sources of estimated clade ages.

description: Phylogenetic tree methods, topological relationships, and sources of estimated clade ages.
DOI: 10.6084/m9.figshare.3561819.v1
title: Appendix A. Phylogenetic tree methods, topological relationships, and sources of estimated clade ages.

description: Phylogenetic tree methods, topological relationships, and sources of estimated clade ages.
DOI: 10.6084/m9.figshare.3561816
title: Supplement 1. Code for tree-building R function, along with example data and code for use.

description: File List Supplement-tc2ape-script.R (MD5: 4d291f1a0c41b2e9f75dbb6c322105d0) R function to build tree<br> Supplement-build-tree-script.R (MD5: 393ce10283ab945ed0cb151556d7c8fc) example use of R function<br> Hemiptera-taxon-container.csv (MD5: 86b7e9fee0fe43aeefbdd8212ae1cbe9) example data for R function Description The R function used to assemble hierarchical relationships ("trees") from workflow used in the manuscript is provided. The Hemiptera data set provided shows how data entry is organized in a simple two-column table, with all taxa and higher clades listed exactly once in the left column, and all higher nodes (non-tips) listed at least once in the right column. The "build-tree-script" demonstrates how the data set and custom function are combined in practice to produce a usable tree.
DOI: 10.6084/m9.figshare.3561816.v1
title: Supplement 1. Code for tree-building R function, along with example data and code for use.

description: File List Supplement-tc2ape-script.R (MD5: 4d291f1a0c41b2e9f75dbb6c322105d0) R function to build tree<br> Supplement-build-tree-script.R (MD5: 393ce10283ab945ed0cb151556d7c8fc) example use of R function<br> Hemiptera-taxon-container.csv (MD5: 86b7e9fee0fe43aeefbdd8212ae1cbe9) example data for R function Description The R function used to assemble hierarchical relationships ("trees") from workflow used in the manuscript is provided. The Hemiptera data set provided shows how data entry is organized in a simple two-column table, with all taxa and higher clades listed exactly once in the left column, and all higher nodes (non-tips) listed at least once in the right column. The "build-tree-script" demonstrates how the data set and custom function are combined in practice to produce a usable tree.
DOI: 10.6084/m9.figshare.3561813
title: Appendix A. Details on the biophysical model, and on the methodology to estimate absorbance values, measure stomatal conductance, and record microclimate temperatures, and figures showing mean microclimate temperature excess for each life stage under the same environmental conditions at air temperature 25 °C, model simulation of stomatal conductance as function of radiation level at the leaf surface for each life stage, and predicted microclimate temperature during warming for each life stage.

description: Details on the biophysical model, and on the methodology to estimate absorbance values, measure stomatal conductance, and record microclimate temperatures, and figures showing mean microclimate temperature excess for each life stage under the same environmental conditions at air temperature 25 °C, model simulation of stomatal conductance as function of radiation level at the leaf surface for each life stage, and predicted microclimate temperature during warming for each life stage.
DOI: 10.6084/m9.figshare.3561813.v1
title: Appendix A. Details on the biophysical model, and on the methodology to estimate absorbance values, measure stomatal conductance, and record microclimate temperatures, and figures showing mean microclimate temperature excess for each life stage under the same environmental conditions at air temperature 25 °C, model simulation of stomatal conductance as function of radiation level at the leaf surface for each life stage, and predicted microclimate temperature during warming for each life stage.

description: Details on the biophysical model, and on the methodology to estimate absorbance values, measure stomatal conductance, and record microclimate temperatures, and figures showing mean microclimate temperature excess for each life stage under the same environmental conditions at air temperature 25 °C, model simulation of stomatal conductance as function of radiation level at the leaf surface for each life stage, and predicted microclimate temperature during warming for each life stage.
DOI: 10.6084/m9.figshare.3561810
title: Appendix A. Sample sizes and original collection locations for all data sets.

description: Sample sizes and original collection locations for all data sets.
DOI: 10.6084/m9.figshare.3561807
title: Appendix B. Relative abundances of lichen species occurring in each data set.

description: Relative abundances of lichen species occurring in each data set.
DOI: 10.6084/m9.figshare.3561807.v1
title: Appendix B. Relative abundances of lichen species occurring in each data set.

description: Relative abundances of lichen species occurring in each data set.
DOI: 10.6084/m9.figshare.3561804
title: Appendix C. All species in the ONC, GxE, and Uintah data sets plotted over rough bark cover.

description: All species in the ONC, GxE, and Uintah data sets plotted over rough bark cover.
DOI: 10.6084/m9.figshare.3561804.v1
title: Appendix C. All species in the ONC, GxE, and Uintah data sets plotted over rough bark cover.

description: All species in the ONC, GxE, and Uintah data sets plotted over rough bark cover.
DOI: 10.6084/m9.figshare.3561801
title: Appendix A. List of top models for the effect of early life environmental conditions on adult survival in barn swallows in Denmark.

description: List of top models for the effect of early life environmental conditions on adult survival in barn swallows in Denmark.
DOI: 10.6084/m9.figshare.3561801.v1
title: Appendix A. List of top models for the effect of early life environmental conditions on adult survival in barn swallows in Denmark.

description: List of top models for the effect of early life environmental conditions on adult survival in barn swallows in Denmark.
DOI: 10.6084/m9.figshare.3561798
title: Appendix B. List of top models for the effect of early life investment in reproduction and early life environmental conditions on ALR in barn swallows in Denmark.

description: List of top models for the effect of early life investment in reproduction and early life environmental conditions on ALR in barn swallows in Denmark.