cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22302910
title: Thladiantha-specific reference

description: The reference fasta file of Thladiantha in nucleotide format. We used the header information in downstream analysis. ( 1. "reference_fasta_header_info.txt" Thladiantha-specific reference used for comparison. 2."target_length.txt" Thladiantha-specific reference length of the loci). <br> <strong>build_thladiantha_ref.py- python script used to make the new references </strong> <br>
DOI: 10.6084/m9.figshare.22302937
title: Captus extraction file from the respective Thladiantha-specific references

description: This file was created by the Captus extraction step using the reference file. Further, it was used for comparison with HybPiper and SECAPR.
DOI: 10.6084/m9.figshare.22302952
title: SECAPR extraction file from the respective Thladiantha-specific references

description: This file was created using the reference file by the SECAPR extraction (*_selected_blast_hit.tsv from all the samples) step. Further, it was used for comparison with HybPiper and SECAPR. The python script was used to process this file to remove the overlaps in the blast output file.
DOI: 10.5517/ccdc.csd.cc2fs2jv
title: CCDC 2257467: Experimental Crystal Structure Determination

description: Related Article: Nantachai Inprung, Adrian C. Whitwood, Richard J. K. Taylor, Michael J. James, William P. Unsworth|2023|Eur.J.Org.Chem.|26|e202300603|doi:10.1002/ejoc.202300603
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fs2kw
title: CCDC 2257468: Experimental Crystal Structure Determination

description: Related Article: Nantachai Inprung, Adrian C. Whitwood, Richard J. K. Taylor, Michael J. James, William P. Unsworth|2023|Eur.J.Org.Chem.|26|e202300603|doi:10.1002/ejoc.202300603
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzff9
title: CCDC 2263571: Experimental Crystal Structure Determination

description: Related Article: Simon J. Coles, Simon Cooper, Wim T. Klooster, Laura J McCormick Mc Pherson, Andrew W. G. Platt|2023|Eur.J.Inorg.Chem.|26|e202300375|doi:10.1002/ejic.202300375
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzfkf
title: CCDC 2263575: Experimental Crystal Structure Determination

description: Related Article: Simon J. Coles, Simon Cooper, Wim T. Klooster, Laura J McCormick Mc Pherson, Andrew W. G. Platt|2023|Eur.J.Inorg.Chem.|26|e202300375|doi:10.1002/ejic.202300375
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fzqw1
title: CCDC 2263864: Experimental Crystal Structure Determination

description: Related Article: Arun Dhurey, Subhro Mandal, Animesh Pramanik|2023|Eur.J.Org.Chem.|26|e202300770|doi:10.1002/ejoc.202300770
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.5745949
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5745948
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5758971
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5759077
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5816068
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5851755
title: Cruise data

description: Cruise data
DOI: 10.5281/zenodo.5851761
title: Cruise data

description: Cruise data
DOI: 10.25810/fj1y-8c74.58
title: International Wire Services Coverage of Climate Change or Global Warming, 2004-2023 - October 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.21227/bdm3-6045
title: Software-Defined Disjointed Multipath Networks

description: These are the experiment results of the Software-Defined Disjointed Multipath Network (SDDMN).They were recorded using Microsoft Excel and saved in the '.xlsx' file format.The figures referenced in the related paper are also included in these files.There are four files corresponding to the four experiments:1. fig_5-3_upload.xlsx corresponds to Experiment 1: The Increased Demand Size.2. fig_5-4_upload.xlsx corresponds to Experiment 2: The Increased E2E Delay Requirements.3. fig_5-5_upload.xlsx corresponds to Experiment 3: The Increased Ranges of Available Disjointed Paths with 0.1 ms delay.4. fig_5-6_upload.xlsx corresponds to Experiment 4: The Increased Ranges of Available Disjointed Paths with 0.05 ms delay.
DOI: 10.18112/openneuro.ds004712.v1.0.2
title: ON-Harmony: A resource for development and comparison of multi-modal brain 3T MRI harmonisation approaches
DOI: 10.5281/zenodo.10204239
title: Apeldoorn - Urban Circularity Assessment sheet, all data for 2018 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2018 for Apeldoorn, Netherlands. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015328/
DOI: 10.5281/zenodo.10204240
title: Apeldoorn - Urban Circularity Assessment sheet, all data for 2018 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2018 for Apeldoorn, Netherlands. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015328/
DOI: 10.6084/m9.figshare.21941102
title: Is the pandemic masking waste management? – A review on fallout of the COVID-19 viral contagion

description: The global outbreak of SARS-CoV-2 has spurred a reassessment of Municipal Solid Waste management strategies and approaches. A significant need for sanitation and hygiene was accentuated for disease prevention and control with the onset of the pandemic. With an alteration of the status quo in waste management system, an unprecedented amount of face masks, protective equipment, and other biological wastes was generated in the form of Municipal Solid Waste . This upsurge of potentially infected wastes originated a risk of transmission amongst frontline workers. Furthermore, the potential contamination of Municipal Solid Waste was rendered as a legitimate threat due to improper collection practices, disposal and handling of solid waste. Several novel waste disposal techniques and waste management policies were also introduced during this period. However, the sanitation-policy making-occupational safety nexus remains inadequately explored under the prevalent COVID-19 scenario. Through the prism of shifting waste composition, this review offers a global assessment of existing solid waste management systems during the COVID-19 pandemic. The physiological and psychological hazards faced by the frontline workers were explored and instances of best-case and worst-case policies on solid waste handling were recorded. Modern methods of waste disposal and latest trends of policymaking were evaluated. A model study of unsupervised learning via Partition Around Medoids cluster analysis was undertaken to reveal underlying patterns of waste management policies. Although, the clusters were formed devoid of any socio-economic parameters, this study strives to indicate proof of concept and can serve as a precursor to advanced clustering studies.
DOI: 10.6084/m9.figshare.21941102.v1
title: Is the pandemic masking waste management? – A review on fallout of the COVID-19 viral contagion

description: The global outbreak of SARS-CoV-2 has spurred a reassessment of Municipal Solid Waste management strategies and approaches. A significant need for sanitation and hygiene was accentuated for disease prevention and control with the onset of the pandemic. With an alteration of the status quo in waste management system, an unprecedented amount of face masks, protective equipment, and other biological wastes was generated in the form of Municipal Solid Waste . This upsurge of potentially infected wastes originated a risk of transmission amongst frontline workers. Furthermore, the potential contamination of Municipal Solid Waste was rendered as a legitimate threat due to improper collection practices, disposal and handling of solid waste. Several novel waste disposal techniques and waste management policies were also introduced during this period. However, the sanitation-policy making-occupational safety nexus remains inadequately explored under the prevalent COVID-19 scenario. Through the prism of shifting waste composition, this review offers a global assessment of existing solid waste management systems during the COVID-19 pandemic. The physiological and psychological hazards faced by the frontline workers were explored and instances of best-case and worst-case policies on solid waste handling were recorded. Modern methods of waste disposal and latest trends of policymaking were evaluated. A model study of unsupervised learning via Partition Around Medoids cluster analysis was undertaken to reveal underlying patterns of waste management policies. Although, the clusters were formed devoid of any socio-economic parameters, this study strives to indicate proof of concept and can serve as a precursor to advanced clustering studies.
DOI: 10.5281/zenodo.10204243
title: Apeldoorn - Urban Circularity Assessment sheet, all data for 2014 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2014 for Apeldoorn, Netherlands. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
(For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015328/)
DOI: 10.5281/zenodo.10204244
title: Apeldoorn - Urban Circularity Assessment sheet, all data for 2014 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2014 for Apeldoorn, Netherlands. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
(For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015328/)
DOI: 10.5281/zenodo.10145101
title: The role of injection method on residual trapping at the pore-scale in continuum-scale samples: raw micro-CT dataset

description: The experiments in this work explore the role of a variable injection rate on gas saturation and residual trapping. There are 2 experiments in this work H2L (high to low injection rate) and L2H (low to high injection rate). The workflow for processing the micro-CT images to get the segmented images is described in [1]. 
The following scans are included in this repository NB. all data for this repository is segmented micro-CT data.: 

Dry scan prior to experiment = 05_dry_bin2_merged.tif
Sample fully saturated with brine = 07_wet_bin2_merged.tif
H2L during high flow  = 09_h2lh_merged.tif
H2L during low flow  = 11_h2ll_2_merged.tif
H2L at the end of drainage (no flow) = 16_dra1_pd5_merged.tif
H2L at the end of imbibition (no flow) = 21_imb1_pi1_merged.tif
Sample fully resaturated with brine = 28_wet2_bin2_merged.tif
L2H during low flow = 29_2_l2hl_merged.tif
L2H during high flow = 30_l2hh_merged.tif
L2H at the end of drainage (no flow) =31_dra2_pd1_merged.tif
L2H at the end of imbibition (no flow)  =33_imb2_pi1_merged.tif
DOI: 10.5281/zenodo.10145102
title: The role of injection method on residual trapping at the pore-scale in continuum-scale samples: raw micro-CT dataset

description: The experiments in this work explore the role of a variable injection rate on gas saturation and residual trapping. There are 2 experiments in this work H2L (high to low injection rate) and L2H (low to high injection rate). The workflow for processing the micro-CT images to get the segmented images is described in [1]. 
The following scans are included in this repository NB. all data for this repository is segmented micro-CT data.: 

Dry scan prior to experiment = 05_dry_bin2_merged.tif
Sample fully saturated with brine = 07_wet_bin2_merged.tif
H2L during high flow  = 09_h2lh_merged.tif
H2L during low flow  = 11_h2ll_2_merged.tif
H2L at the end of drainage (no flow) = 16_dra1_pd5_merged.tif
H2L at the end of imbibition (no flow) = 21_imb1_pi1_merged.tif
Sample fully resaturated with brine = 28_wet2_bin2_merged.tif
L2H during low flow = 29_2_l2hl_merged.tif
L2H during high flow = 30_l2hh_merged.tif
L2H at the end of drainage (no flow) =31_dra2_pd1_merged.tif
L2H at the end of imbibition (no flow)  =33_imb2_pi1_merged.tif
DOI: 10.5281/zenodo.10210879
title: Transcriptional profiling of peripheral blood mononuclear cells identifies inflammatory phenotypes in ataxia telangiectasia

description: This is an AnnData object in h5ad (hdf5) format containing de-identified bulk RNA-seq gene expression matrices from PBMCs. These data are related to the study entitled "Transcriptional profiling of peripheral blood mononuclear cells identifies inflammatory phenotypes in ataxia telangiectasia". 
This AnnData object contains a table of sample-specific metadata (`obs`), gene-specific metadata (`var`), and multiple gene expression matrices stored as `layers`. These layers include raw counts, DEseq2 normalized counts, vst normalized counts, and rlog normalized counts. Some additional layers include regressed versions of the previously mentioned counts matrices, where sequencing batch (`cohort` in the obs table) has been regressed out using the `combat` tool. The layer `rlog_combat_regressed_batch` is recommended for downstream processing, and has been loaded into the `X` slot of the anndata object for convenience. 
The md5sum of this h5ad file is listed here: 04d7c6c549fb37cf730a5dca7897f86f
Opening and working with AnnData objects in h5ad format requires the use of the `anndata` python library (https://github.com/scverse/anndata).
DOI: 10.5281/zenodo.10210880
title: Transcriptional profiling of peripheral blood mononuclear cells identifies inflammatory phenotypes in ataxia telangiectasia

description: This is an AnnData object in h5ad (hdf5) format containing de-identified bulk RNA-seq gene expression matrices from PBMCs. These data are related to the study entitled "Transcriptional profiling of peripheral blood mononuclear cells identifies inflammatory phenotypes in ataxia telangiectasia". 
This AnnData object contains a table of sample-specific metadata (`obs`), gene-specific metadata (`var`), and multiple gene expression matrices stored as `layers`. These layers include raw counts, DEseq2 normalized counts, vst normalized counts, and rlog normalized counts. Some additional layers include regressed versions of the previously mentioned counts matrices, where sequencing batch (`cohort` in the obs table) has been regressed out using the `combat` tool. The layer `rlog_combat_regressed_batch` is recommended for downstream processing, and has been loaded into the `X` slot of the anndata object for convenience. 
The md5sum of this h5ad file is listed here: 04d7c6c549fb37cf730a5dca7897f86f
Opening and working with AnnData objects in h5ad format requires the use of the `anndata` python library (https://github.com/scverse/anndata).
DOI: 10.25810/v575-3r57.60
title: Japanese Newspaper Coverage of Climate Change or Global Warming, 2000-2023 - October 2023

description: The Media and Climate Change Observatory Data monitors 126 sources (across newspapers, radio and TV) in 58 countries in seven different regions around the world. Data is assembled by accessing archives through the Lexis Nexis, Proquest and Factiva databases via the University of Colorado libraries. More information may be found at: http://mecco.colorado.edu.
DOI: 10.6084/m9.figshare.24639612
title: Data from: From Klinefelter syndrome to high grade aneuploidies: expanding the gene-dosage effect of supernumerary X chromosomes

description: Supplementary Table 1. Pubertal stage, gonadal development, function and significantly different parameters, verified among Tanner-matched KS and HGAs subjects.
DOI: 10.6084/m9.figshare.24639612.v2
title: Data from: From Klinefelter syndrome to high grade aneuploidies: expanding the gene-dosage effect of supernumerary X chromosomes

description: Supplementary Table 1. Pubertal stage, gonadal development, function and significantly different parameters, verified among Tanner-matched KS and HGAs subjects.
DOI: 10.6084/m9.figshare.24639612.v1
title: Supplementary Table 1

description: Pubertal stage, gonadal development, function and significantly different parameters, verified among Tanner-matched KS and HGAs subjects.
DOI: 10.23636/rcm4-zk44
title: UK Doctoral Thesis Metadata from EThOS

description: The data in this collection comprises the bibliographic metadata for all UK doctoral theses listed in EThOS, the UK's national thesis service. We estimate the data covers around 98% of all PhDs ever awarded by UK Higher Education institutions, dating back to 1787. Thesis metadata from every PhD-awarding university in the UK is included. You can investigate and re-use this unique collection of UK universities' PhD thesis data to analyse trends in postgraduate research, make connections between researchers, apply large data analysis, improve citation of theses and many more applications.
description: UK
DOI: 10.5281/zenodo.10204299
title: Bodø - Urban Circularity Assessment sheet, all data for 2020 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2020 for Bodø, Norway. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
(For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015332/)
DOI: 10.5281/zenodo.10204300
title: Bodø - Urban Circularity Assessment sheet, all data for 2020 analysis

description: This excel sheet contains the data for conducting the Urban Circularity Assessment for the year 2020 for Bodø, Norway. 
"CityLoops - Closing the loop for urban material flows" is a EU Horizon2020 project with 28 partners. (Official project website: https://cityloops.eu/). CityLoops brings together six ambitious European cities to demonstrate a series of innovative tools and urban planning approaches, aimed at closing the loops of urban material flows and increasing their regenerative capacity.
(For detailed information please visit: https://cityloops.metabolismofcities.org/library/1015332/)
DOI: 10.5281/zenodo.10210935
title: Dataset for the manuscript Manganese-rich sandstones as an indicator of ancient oxic lake water conditions in Gale crater, Mars

description: This file is a csv file containing the average composition of rocks in the Murray formation in Gale crater, as determined by ChemCam, and metadata, for the manuscript Manganese-rich sandstones as an indicator of ancient oxic lake water conditions in Gale crater, Mars submitted to the Journal of Geophysical Research: Planets. The file contains the major oxide composition data for each observation point (comprised of at least 30 shots where the first 5 are removed due to Mars dust), the root mean squared error (RMSE) for each ChemCam observation point, and the standard deviation of the shot-to-shot data of that observation point (shot_stdev), and the sum of oxides of the observation point. The metadata includes the ‘Plot Label’ to indicate the category of the target (Dark Sandstones, Light Sandstones, Concretion, Other Diagenetic, Murray) as indicated in Figure 1 of the manuscript. The data was also used to produce Table 1. The filename, sol, spacecraft clock, target name, target distance from ChemCam, laser power, spectral totals, elevation, longitude, latitude, easting, northing, and notes metadata columns are provided for each observation point. The observations points are in order of ‘Plot Label’ and then by Spacecraft Clock.