cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28008333
title: Table S5 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: An .xlsx file including the data underlying the figures along with data column descriptors.
DOI: 10.6084/m9.figshare.c.3602318_d6.v1
title: Additional file 4: Table S2. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene set enrichment analysis of RNA-Seq data (related to Additional file 2: Figure S2B and E). (XLSX 22.2 kb)
DOI: 10.6084/m9.figshare.28008336
title: R file 2 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: R code to evaluate how parasite species richness maps onto fish species' geographic ranges.
DOI: 10.6084/m9.figshare.28008336.v1
title: R file 2 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: R code to evaluate how parasite species richness maps onto fish species' geographic ranges.
DOI: 10.6084/m9.figshare.28008339
title: R file 1 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: An R file containing miscellaneous R code provided by Highland Statistics Ltd, called on by the two analysis R files.
DOI: 10.6084/m9.figshare.28008339.v1
title: R file 1 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: An R file containing miscellaneous R code provided by Highland Statistics Ltd, called on by the two analysis R files.
DOI: 10.6084/m9.figshare.c.3602345_d4.v1
title: Additional file 2: Table S2. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Statistical analysis of IRA expression for samples depicted in Fig.Â 1. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.28008342
title: R file 3 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: R code to evaluate how aggregate parasite biomass density maps onto fish species' geographic ranges.
DOI: 10.6084/m9.figshare.28008342.v1
title: R file 3 from Evidence for the importance of trophically transmitted parasites and predation at the lower latitudes of species ranges

description: R code to evaluate how aggregate parasite biomass density maps onto fish species' geographic ranges.
DOI: 10.6084/m9.figshare.c.3602351_d3.v1
title: Additional file 3: of A comprehensive survey of the mutagenic impact of common cancer cytotoxics

description: Identification of somatic mutations in the whole genome sequence files using the IsoMut application. (HTML 221 kb)
DOI: 10.6084/m9.figshare.c.3602342_d6.v1
title: MOESM5 of Molecular phylogeny, morphology and life-history comparisons within Circus cyaneus reveal the presence of two distinct evolutionary lineages

description: Additional file 5: S6. Pairwise genetic distance matrix for NADH dehydrogenase (ND1).
DOI: 10.6084/m9.figshare.c.3602342_d7.v1
title: MOESM3 of Molecular phylogeny, morphology and life-history comparisons within Circus cyaneus reveal the presence of two distinct evolutionary lineages

description: Additional file 3: S5. Pairwise genetic distance matrix for Cytochrome b.
DOI: 10.17863/cam.12136
title: Research data supporting "Consistent individual differences drive collective behaviour and group functioning of schooling fish"

description: Data collection methods and statistical analyses can be found in the paper. For any queries or when interested in using the data for additional hypothesis testing, please email the lead contact Jolle W. Jolles: j.w.jolles@gmail.com. The code to run the individual based model simulations that accompanies data from the manuscript can be found on GitHub at https://github.com/vivekhsridhar/individual_differences/
DOI: 10.6084/m9.figshare.c.3602318_d8.v1
title: Additional file 8: Table S5. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene set enrichment analysis of ribosome profiling data (related to Fig.Â 3d). (XLSX 11.1 kb)
DOI: 10.6084/m9.figshare.c.3602318_d9.v1
title: Additional file 5: Table S3. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: Gene ontology term enrichments for RNA-Seq data from differentiated TSC2 deletion cell lines and microarray data of patient cortical tubers (related to Fig.Â 2e). (XLSX 19.8 kb)
DOI: 10.6084/m9.figshare.c.3602345_d7.v1
title: Additional file 1: Table S1. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Statistical analysis of IGF1R expression for samples depicted in Fig.Â 1. (XLSX 44Â kb)
DOI: 10.6084/m9.figshare.c.3602345_d8.v1
title: Additional file 6: Table S6. of Ridaforolimus (MK-8669) synergizes with Dalotuzumab (MK-0646) in hormone-sensitive breast cancer

description: Ingenuity Pathway Analysis. (XLSX 115Â kb)
DOI: 10.17863/cam.47337
title: Volatile-rich magmas distributed through the upper crust in the Main Ethiopian Rift, Dataset

description: Dataset contains major element compositions of mineral hosts, and major, minor and volatile element compositions of melt inclusions for basalts and peralkaline rhyolite samples from the Main Ethiopian Rift, as described in the accompanying paper.
DOI: 10.6084/m9.figshare.c.3602318_d10.v1
title: Additional file 10: Table S7. of Genomic analysis of the molecular neuropathology of tuberous sclerosis using a human stem cell model

description: RNA-Seq and ribosome profiling data of differentiated TSC2 wild-type and homozygous deletion cell lines treated with mTOR inhibitors (related to Fig.Â 4). (XLSB 7.52 mb)
DOI: 10.17863/cam.11392
title: Data supporting NSPN publication "Structural covariance networks are coupled to expression of genes enriched in supragranular layers of the human cortex "

description: Freesurfer reconstruction of 6 postmortem brain of the Human Brain Atlas of the Allen Brain Institute for Brain Science. Includes a high resolution parcellation. Original donor's data has been downloaded from: http://human.brain-map.org/mri_viewers/data. This data should be cited following the guidelines at http://www.alleninstitute.org/legal/citation-policy/. The Freesurfer license is included in this repository and more information can be found at https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferMethodsCitation.
DOI: 10.17863/cam.93457
title: Research data supporting: "Microstructural and neurochemical plasticity mechanisms interact to enhance human perceptual decision making"

description: Data for all main text and supplementary figures for "Microstructural and neurochemical plasticity mechanisms interact to enhance human perceptual decision making."
DOI: 10.6084/m9.figshare.c.3602441_d7.v1
title: Additional file 13: File S7. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: List of genes with functional annotation and with secreted prediction separated by clusters of co-regulated genes. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3602477_d2.v1
title: Additional file 1: of Patients’ and health system’s delays in the diagnosis and treatment of new pulmonary tuberculosis patients in West Gojjam Zone, Northwest Ethiopia: a cross-sectional study

description: Data set used for the article. The data set consists of 706 cases included in the study and the variables used in this article. (XLS 418 kb)
DOI: 10.17863/cam.107612
title: Research data supporting "Non-unitary Trotter circuits for imaginary time evolution"

description: Zip file containing the data files, along with the python scripts, used to generate the figures in "Non-unitary Trotter circuits for imaginary time evolution". Data files are obtained from in-house python scripts. Refer to the README and DataREADME for further information.
DOI: 10.6084/m9.figshare.c.3602474_d3.v1
title: Additional file 1: Table S1. of Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats

description: Number of reads/sequences retained at each stage of the assembly process. Table S2. Transcript length and read depth in relation to the number of species in which transcripts were identified. Transcripts from each Rotaria species in turn were used as queries in a BLASTN search of the other three Rotaria transcriptomes (e-value ≤1e-10). Mean transcript length and FPKM is presented in relation to the number of species transcripts were identified in. Table S3. Percentage of transcripts with h u ≥30 with varying HGT detection thresholds. Left: percentage of transcripts with h u ≥30, for decreasing e-value thresholds for accepting transcripts for analysis. Right: percentage of transcripts with h u ≥30, for increasing minimum transcript length for analysis. Red, R. magnacalcarata; blue, R. socialis; green, R. sordida; and black, R. tardigrada. Table S4. The number of orthologs that are unique to different subclades based on presence/absence in transcriptomes for different methods of identifying orthologs and different criteria for assigning orthologs as foreign or not. Table S5. BLASTN matches in the R. magnacalcarata genome of genes inferred to be unique to particular species based on transcriptome presences/absences. Table S6. Best BLASTN matches of scaffolds that contain a foreign gene but no non-foreign gene in R. magnacalcarata in GenBank. Table S7. Reconstruction of numbers and rates of gains and losses of foreign genes on different branches or sets of branches on the Rotaria tree. Results based on two methods of assigning orthologs are shown: 1) reciprocal BLAST and 2) Markov clusters; and excluding or including correction based on R. magnacalcarata genome matches. Table S8. Results of topGO enrichment analysis for GO annotation categories that are over-represented in particular species or sets of species relative to numbers across the whole foreign ortholog dataset. Fisher’s exact tests with P &lt;0.01 are shown in bold. The “Weight01” option was used to correct for significance of nested annotation terms. Only terms with more than five orthologs present in the whole dataset are shown. Table S9. List of foreign transcripts (h U &gt;30), results of the HGT analysis, GO annotation and matches to the R. magnacalcarata draft genome. Table S10. List of nuclear genes used in phylogenetic reconstruction. (XLSX 3668 kb)
DOI: 10.6084/m9.figshare.c.3602441_d9.v1
title: Additional file 15: File S8. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: List of genes with functional annotation, LFC values and predicted protein sequence that were used to construct the model of L. theobromae response to HS (shown in Fig. 5). (XLSX 63 kb)
DOI: 10.17863/cam.85700
title: Research data supporting "Interlayer fracture behaviour of functionally layered concrete"

description: The Excel file contains the measurement of the compressive strength and density of each mixture and mixture combination as defined in the manuscript and the data of the fracture properties obtained from the Wedge-Splitting Test such splitting Force and total fracture energy. Furthermore the Excel file contains the raw measurement of the dynamic E-modulus.
DOI: 10.6084/m9.figshare.c.3602441_d10.v1
title: Additional file 12: File S6. of Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

description: List of genes with functional annotation separated by clusters of co-regulated genes. (XLSX 216 kb)
DOI: 10.6084/m9.figshare.c.3602444_d10.v1
title: Additional file 10: of Age-related accrual of methylomic variability is linked to fundamental ageing mechanisms

description: Enrichment of identified trans-genes in GO terms based on 20Â k permutations. (XLSX 104 kb)
DOI: 10.6084/m9.figshare.c.3602486_d1.v1
title: Additional file 1: of Age and HPV type as risk factors for HPV persistence after loop excision in patients with high grade cervical lesions: an observational study

description: Datasets. (XLS 106 kb)
DOI: 10.20363/zfmk-coll.homoptera-2024-12
title: ZFMK Homoptera collection

description: The Homoptera collection at the Leibniz Institute for the Analysis of Biodiversity Change (LIB) - Museum Koenig Bonn contains parts of the collection of A. Jacobi, Johann Klapperich and the permanent loan of the Zoo Cologne
DOI: 10.6084/m9.figshare.c.3602591_d6.v1
title: Additional file 2 of Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

description: Table S1. Genome coverage of the different repeat families. For each repeat family, a coverage calculation has been performed and the percentage of coverage of each family was calculated.by relating the cover of every family with respect to the overall repeat coverage of the genome. Table S2. Compartmentalization of the tomato genome in three major regions. Coordinates in gff3 format of the three regions of the genome based on the repeats and genes coverage calculation into 500Â kb windows with overlap of 50Â kb.Table S3. Names of identified TE-genes. List of ID and name of each gene identified as a TE-gene. Table S4. Statistical results of the analysis of transposable elements consensus by the method of Makarevitch and al. Table S5. Functional annotation of differentially expressed genes candidate as RIN targets. (XLSX 89 kb)
DOI: 10.17863/cam.37617
title: Research data supporting "Interleaving anomalies in collaborative text editors"

description: This data file contains tests for a particular edge case that occurs in collaborative text editing CRDTs: in some algorithms, when strings of characters are concurrently inserted at the same position, insertions by different collaborators are interleaved. The code in this repository demonstrates such interleaving occurring in the Logoot, SOCT2, and LSEQ algorithms. No interleaving is found in RGA, WOOT, WOOTH or WOOTO.
DOI: 10.17863/cam.56697
title: Research data supporting 'Lithic Technological Change and Behavioral Responses to the Last Glacial Maximum Across Southwestern Europe'

description: This dataset was used to collect and analyze data for the MPhil Thesis, "Lithic Technological Change and Behavioral Responses to the Last Glacial Maximum Across Southwestern Europe." This dataset contains the raw data collected from published literature, and the R code used to run correspondence analysis on the data and create graphical representations of the results. It also contains notes to aid in interpreting the dataset, and a list detailing how variables in the dataset were grouped for use in analysis. The file "Diss Data.xlsx" contains the raw data collected from publications on Upper Paleolithic archaeological sites in France, Spain, and Italy. This data is the basis for all other files included in the repository. The document "Diss Data Notes.docx" contains detailed information about the raw data, and is useful for understanding its context. "Revised Variable Groups.docx" lists all of the variables from the raw data considered "tool types" and the major categories into which they were sorted for analysis. "Group Definitions.docx" provides the criteria considered to make the groups listed in the "Revised Variable Groups" document. "r_diss_data.xlsx" contains only the variables from the raw data that were considered for correspondence analysis carried-out in RStudio. The document "ca_barplot.R" contains the RStudio code written to perform correspondence analysis and percent composition analysis on the data from "R_Diss_Data.xlsx". This file also contains code for creating scatter plots and bar graphs displaying the results from the CA and Percent Comp tests. The RStudio packages used to carry out the analysis and to create graphical representations of the analysis results are listed under "Software/Usage Instructions." "climate_curve.R" contains the RStudio code used to create climate curves from NGRIP and GRIP data available open-access from the Neils Bohr Institute Center of Ice and Climate. The link to access this data is provided in "Related Resources" below.
DOI: 10.17863/cam.46082
title: EPIC-Norfolk Epigenome-Wide Association Study of Incident Type 2 Diabetes

description: This EWAS was undertaken in an incident T2DM case-cohort study nested within the EPIC-Norfolk study, a prospective cohort study that recruited 25,639 individuals aged between 40-79 years at baseline in 1993-1997. Incident T2DM cases were ascertained from multiple sources: two follow-up health and lifestyle questionnaires providing self-reported information on doctor-diagnosed diabetes or medications; medications brought to the second clinical exam; and medical record linkage. DNAm intensity was measured using the Illumina HumanMethylation450 array. Bisulfite conversion of DNA was performed using the EZ DNA methylation kit (Zymo Research, Orange, CA, USA). Diabetes DNAm was measured in DNA extracted from whole blood samples collected at baseline. Converted DNA was assayed by PCR (Polymerase Chain Reaction) and gel electrophoresis. Each 96 well DNA sample plate contained two duplicate samples. The average correlation between the duplicate samples was 98%. To identify MVPs associated with incident T2DM, we performed a logistic regression model for each methylation marker with incident T2DM status, adjusted for age, sex, estimated cell counts, and sample plate.
DOI: 10.6084/m9.figshare.c.3602720_d4.v1
title: Additional file 1: Figure S1. of Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

description: Extended phylogenetic tree of Slc22/slc22 protein family in vertebrates; Figure S2: Conserved synteny analysis of less characterized human and zebrafish Slc22/slc22 genes; Figure S3: Tissue expression profile of major zebrafish slc22 genes organized by individual genes; Table S1: Protein annotations with accession numbers of all analysed species; Table S2: Heatmap of zebrafish Slc22 gene tissue expression results. (XLSX 1109 kb)
DOI: 10.6084/m9.figshare.c.3602720_d5.v1
title: Additional file 2: of Phylogenetic, syntenic, and tissue expression analysis of slc22 genes in zebrafish (Danio rerio)

description: Gene structure analysis of zebrafish and human slc22/Slc22. Structure of coding exons, exons and introns together with gene lengths. (XLSX 539 kb)
DOI: 10.17863/cam.37247
title: Data supporting: Corrosion-Induced Cracking and Bond Strength in Reinforced Concrete

description: This dataset contains results from an experimental programme that investigated the structural effects of corrosion of the internal steel reinforcement embedded in concrete. It includes information on concrete mix composition, results from standard material characterisation tests (i.e. compressive strength on cubes and cylinders, indirect tensile splitting strength), predicted and measured levels of steel corrosion from accelerated corrosion testing using an impressed current, measurements of corrosion-induced concrete surface crack widths, bond strength from concentric pull-out tests, and bond stress-slip curves.
DOI: 10.6084/m9.figshare.c.3602747_d2.v1
title: MOESM2 of Effect of late sodium current inhibition on MRI measured diastolic dysfunction in aortic stenosis: a pilot study

description: Additional file 2: Table S2. Secondary endpoint measures for FAS population: baseline vs. week-6 vs. week-10 (n=13).
DOI: 10.6084/m9.figshare.c.3602756_d1.v1
title: Additional file 2: of Development and application of an automated algorithm to identify a window of consecutive days of accelerometer wear for large-scale studies

description: R code for execution of OPACH algorithm.
DOI: 10.17863/cam.87159
title: Research data for "Phase stability of the AlxCrFeCoNi alloy system"

description: Data generated from investigations of phase stability in a series of alloy specimens subjected to long-duration heat-treatments at 1000, 850 and 700°C. This includes: SEM images, DSC traces, XRD patterns, Excel spreadsheet of phase quantification data from point EDX spectra. In certain files, the alloy specimens are refered to using the following names: HEA_16 - Al0.5CrMnCoNi, HEA_17 - AlCrFeCoNi. '1200', '1000', '850' and '700' indicate the the exposure temperatures in degrees celsius. 'Hom' refers to material in the 1200°C/72 h homogenised condition.
DOI: 10.17863/cam.8951
title: Data supporting NSPN publication "Personality dimensions emerging during adolescence and young adulthood are underpinned by a single latent trait indexing impairment in social functioning"

description: These supporting material includes 9 data sets and a word document including the description of this data sets.
DOI: 10.6084/m9.figshare.c.3602762_d2.v1
title: Additional file 2 of Accurate chromosome segregation by probabilistic self-organisation

description: Mathematica codes. The Mathematica codes used in this study. To read the file, Wolfram CDF player (available free from https://www.wolfram.com/cdf-player/ ) or Mathematica (Wolfram Research) is required. (ZIP 62 kb)
DOI: 10.6084/m9.figshare.c.3602765_d2.v1
title: MOESM6 of Effect of secretory pathway gene overexpression on secretion of a fluorescent reporter protein in Aspergillus nidulans

description: Additional file 6: Table 2.  Plasmids used in this study.
DOI: 10.6084/m9.figshare.c.3602768_d1.v1
title: Additional file 8: of MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

description: KEGG pathway analysis of dre-mir-29b and genes involved in the regulation of RNA metabolic process. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3602768_d2.v1
title: Additional file 3: of MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

description: Heat maps of cold-related miRNAs and genes. (XLSX 105 kb)
DOI: 10.17863/cam.25865
title: Data supporting "Cultural effects rather than a bilingual advantage in cognition: A review and an empirical study."

description: Data supporting "Cultural effects rather than a bilingual advantage in cognition: A review and an empirical study."
DOI: 10.6084/m9.figshare.c.3602768_d3.v1
title: Additional file 1: of MicroRNAs regulate gene plasticity during cold shock in zebrafish larvae

description: Lists of primers. (XLSX 10 kb)