cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7949141.v1
title: gVCF_NA18559

description: 1000 Genomes gVCF mapped to hs37d5 for NA18559. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/dw7syw7tt7
title: Online data for: Genomic insights in Ascending Aortic Size and Distensibility

description: This dataset contains online supplementary data for our paper 'Genomic insights in Ascending Aortic Size and Distensibility'. 
Please contact us, should there be any questions regarding this data.
DOI: 10.17632/x6ggzp2ycn
title: Lumbar spine MRI annotation with IVD height and Pfirrmann grade predictions (PLOS ONE 2024)

description: This is the data used in the paper submitted for publication in 2024 to PLOS ONE journal titled "Lumbar spine MRI annotation with IVD height and Pfirrmann grade predictions (PLOS ONE 2024)"

This dataset contains 515 T2-weighted mid-sagittal slices selected from the Lumbar Spine MRI dataset (https://data.mendeley.com/datasets/k57fr854j2/2) using the image classification method (Natalia and Sudirman, 2022). Mid-sagittal images are defined as the image that is located closest to the median plane bisecting the body vertically through the midline roughly equally from the left and right side.

There are six sub-folders.
• DICOM – contains the 515 original DICOM images (file extension .ima)
• Input_384 - contains the corresponding PNG file of each DICOM image after being scaled to 384x384 pixels
• Label_384_6SG - contains the label/segmented images that were created manually. These images were used to train deep-learning image segmentation models
• Inferred_384_6SG - contains the label/segmented images that were the results of the automatic segmentation using ResNet-50 architecture (the best model we found in our experiment for this dataset)
• Postprocessed_384_6SG – contains the result of applying post-processing (to improve the quality of the segmentation)
• IVD_HeightResultsPP – contains the automatically determined IVD mid-height data for each input image

The files with filenames beginning with Hyperparameters are text files containing the result of the hyperparameter optimization process during the machine learning training.

The file MLTrainingData – PP.mat is a MATLAB data file containing the extracted self-similar color correlogram feature from the last three IVD regions in each input image.

References

Natalia, F. and Sudirman, S. (2022) Classification of Sagittal Lumbar Spine MRI for Lumbar Spinal Stenosis Detection Using Transfer Learning of a Deep Convolutional Neural Network. Edited by A. K. Nagar et al. Singapore: Springer Nature Singapore. doi: 10.1007/978-981-16-6309-3_16.
DOI: 10.6084/m9.figshare.13264793.v4
title: BioSR

description: BioSR is a biomedical imaging dataset for super-resolution microscopy, currently including more than 2200 pairs of low-and-high resolution images covering four biology structures (CCPs, ER, MTs, F-actin), nine signal levels (15-600 average photon count), and two upscaling-factors (linear SIM and non-linear SIM). BioSR is now freely available, aiming to provide a high-quality dataset for the community of single bio-image super-resolution algorithm and advanced SIM reconstruction algorithm developers.<br>
DOI: 10.6084/m9.figshare.22237519.v6
title: Reliability and validity of the Brief Emotional Experience Scale (BEES) as a measure of emotional well-being

description: Raw data files for article titled 'Reliability and validity of the Brief Emotional Experience Scale (BEES) as a measure of emotional well-being'<br>
DOI: 10.6084/m9.figshare.5909644.v1
title: Neuropathy in MS.xlsx

description: This data shows the peripheral neuropathy in MS patients
DOI: 10.6084/m9.figshare.7780940.v1
title: Custom protein databases (bioRxiv)

description: Custom databases in 10 human tissues.
DOI: 10.17632/v526j384hx
title: Movie Dataset

description: A neutrosophic movie dataset has been designed with truth, indeterminacy and falsity membership values. Easy to handle indeterminate and incomplete information.
DOI: 10.6084/m9.figshare.24502030.v1
title: Multiple sequence alignments of Archaeplastida RHO and RhoGAP

description: RHO and RhoGAP sequences and alignments from diverse Archaeplastida species. The multiple sequence alignments were used for phylogenetic analyses in "RHO of plant signaling was established early in streptophyte evolution" Mulvey and Dolan, 2023.Sequence sources are detailed in Sequence names and sources.xlsx.See Mulvey and Dolan, 2023 for further details.
DOI: 10.6084/m9.figshare.26093869.v5
title: Example dataset containing Fast5 and BAM files

description: Example data used as inputs of the nanopore artificial deletion filtering tool Delter (https://github.com/nkuyfq/Delter).
DOI: 10.6084/m9.figshare.27846741.v1
title: Geometry Optimisation - XYZ Files

description: Optimised structures after DFT with periodic boundary conditions.
DOI: 10.6084/m9.figshare.6173975.v1
title: Automatic detection of 3D recirculation zones (volume)

description: The Matlab function for automatically detecting 3D recirculation zones based on a 3D high-resolution velocity field
DOI: 10.6084/m9.figshare.6854129.v1
title: Paramacrobiotus_sp.TYO.genome.fa.gz

description: Repeat-masked genome assembly of a trehalose-producing tardigrade <i>Paramacrobiotus </i>sp. TYO.
DOI: 10.17632/t2s9ndjkkj
title: E-waste 2023

description: Reciclaje verde de las tarjetas de circuitos electrónicos, empleando diferentes técnicas de procesamiento y caracterización.
DOI: 10.6084/m9.figshare.20406531.v1
title: MTT Lysis Assay 48h U87MG.pzfx

description: Cell lysis of U87MG cells 48h after viral infection
DOI: 10.6084/m9.figshare.25358449.v2
title: Human Friendly Automation: A literature review on the role of the human factor in AI-driven business process automation - Data Set

description: This dataset was created as part of the literature search for the literature review "Human Friendly Automation: A literature review on the role of the human factor in AI-driven business process automation".
DOI: 10.6084/m9.figshare.25573809.v1
title: Supplementary Material for: Education and Training in Addiction Medicine and Psychology across Europe: A EUFAS Survey

description: <b><i>Introduction:</i></b> Training in addiction medicine and addiction psychology is essential to ensure the quality of treatment for patients with substance use disorders. Some earlier research has shown varying training between countries, but no comprehensive study of addiction training across Europe has been performed. The present study by the European Federation for Addiction Societies (EUFAS) aimed to fill this gap. <b><i>Methods:</i></b> A Delphi process was used to develop a questionnaire on specialist training in addiction treatment in 24 European countries. The final questionnaire consisted of 14 questions on either addiction medicine or addiction psychology, covering the nature and content of the training and institutional approval, the number of academic professorial positions, and the estimated number of specialists in each country. <b><i>Results:</i></b> Information was not received from all countries, but six (Belgium, Denmark, Ireland, Italy, Poland, and Romania) reported no specialized addiction medicine training, while 17 countries did. Seven countries (Belgium, France, Ireland, Italy, Russia, Switzerland, and the Netherlands) reported no specialized addiction psychology training, while 14 countries did. Training content and evaluation methods varied. Approval was given either by governments, universities, or professional societies. Eighteen countries reported having professorships in addiction medicine and 12 in addiction psychology. The number of specialists in addiction medicine or psychology varied considerably across the countries. <b><i>Discussion:</i></b> The survey revealed a large heterogeneity in training in addiction medicine and addiction psychology across Europe. Several countries lacked formal training, and where formal training was present, there was a large variation in the length of the training. Harmonization of training, as is currently the case for other medical and psychology specializations, is warranted to ensure optimal treatment for this under-served patient group.
DOI: 10.17632/hyrfnpf8hc
title: Dataset for Turbulent Flow in Binary Barchan Interaction: PIV_Single_Dune

description: The following folders contain data obtained from two-dimensional Particle Image Velocimetry (2D-PIV) experiments for each region where measurements were conducted. Due to the domain size and experimental constraints, the domain containing the barchan dune interacting with a turbulent water flow was divided into three sections (parts). Along the folders, these portions of the domain are referred to as part_1, part_2, and part_3. Cross-correlated PIV data, in vc.7 format, obtained from the commercial software DaVis, are made available. However, due to size restrictions of this data repository, only 10% of the total of 2,000 temporal velocity fields are included. Post-processed data, saved as Matlab matrices, are also made available, corresponding to the total of the 2,000 temporal velocity fields. Additionally, Matlab codes are provided to generate the matrices from the data on DaVis and to plot pertinent results. Note that this folder contains only data from experiments on single dunes. In each subfolder is provided an explanation of its contenent.
DOI: 10.17632/kjw8v3wdh4
title: The Association Between Renal Desaturation Measured Using NIRS and Postoperative AKI

description: Systematic review; 18 articles
DOI: 10.6084/m9.figshare.20186285.v1
title: pbmc.h5ad

description: PBMC dataset for openproblems.bio
DOI: 10.6084/m9.figshare.22082063.v1
title: Natural disaster and risk

description: Natural disaster risk data for bibliometric from WOS and code for abstract text summary by using models.
DOI: 10.6084/m9.figshare.22549813.v1
title: TRUE Block Scale - channel network model files

description: This is an archive of the model scripts (based on the pychan3d code) and PEST input and output files used under the study <strong>Channel network modeling of flow and transport in fractured rock at the Äspö HRL: data-worth analysis for model development, calibration and prediction</strong> Benoit Dessirier, Kunwar Mrityunjai Sharma, Jonas Pedersen, Chin-Fu Tsang, Auli Niemi submitted for publication in Water Resources Research
DOI: 10.6084/m9.figshare.25927072.v1
title: Instrumento de autoevaluación para la identificación de actitudes reflexivas esenciales en la docencia

description: Un cuestionario para valorar las actitudes reflexivas esenciales en la docencia, a partir de la propuesta de Dewey.
DOI: 10.6084/m9.figshare.6728462.v1
title: Beberapa Contoh Fenomena Lanskap Linguistik Kota Surakarta

description: Foto-foto berikut ini merupakan contoh papan nama dan petunjuk jalan yang ada di sekitar kota Surakarta.
DOI: 10.17632/j8z5n3myxw
title: Investigación Juego y Evaluación Formativa

description: En esta carpeta se encuentran documentos excel con la codificación realizada en Atlas ti de acuerdo a las tres categorías del estudio. Qué aprendo, cómo aprendo y para qué aprendo. La codificación incluye a estudiantes y docentes participantes del estudio. También se incluyen Tablas resumen de los participantes como Tabla resumen de los códigos.
DOI: 10.6084/m9.figshare.11719542.v1
title: Row Data of Growth performance of Gurami Sago.doc

description: Row data of weight and length of gurami sago (<i>Osphronemus goramy</i>) strain during 0, 30, 60 and 90 days in different aquaculture system.
DOI: 10.6084/m9.figshare.11956632.v5
title: "Habitat Selection and Human Aesthetic Responses to Flowers" - dataset

description: Dataset used in the paper Habitat Selection and Human Aesthetic Responses to Flowers<br><br>The dataset contains preference ratings of photographs of 14 edible Czech plant species and 20 species native to African savannas. The participants expressed their aesthetic evaluations on rating scales (Study A - Czech plants, Study B - African plants), and using a forced-choice display paradigm (Study C - African plants). The photographs were rated online. The survey targeted primarily Czech participants. <br>
DOI: 10.6084/m9.figshare.12121551.v1
title: Raw data of each organism at each sub location with each field and the community occurrence 4-13-20.xlsx

description: Raw data used for the manuscript titled "<b>Associations among the communities of soil-borne organisms, soil edaphic properties and disease incidence in the field pea root rot complex"</b>
DOI: 10.6084/m9.figshare.12646517.v1
title: Tree species abundance per plot in long-established and secondary broad-leaf forests

description: The data includes species abundance per plot (no. of individuals) in long-established and secondary forests dominated by beech (Fagus sylvativa) in the SW edge of the distribution of this species. The data is associated to the publication "Functional diversity enhances tree growth and reduces herbivory damage in secondary broadleaf forests but does not influence resilience to drought" in Journal of Applied Ecology
DOI: 10.6084/m9.figshare.12955130.v1
title: Scanning electron microscopy images of autoclaved Escherichia coli cells suggest intact cells after treatment

description: Autoclave treatment is the standard approach for killing microbial cells during decontamination. During this process, the common perception is that autoclaved cells are lysed due to high pressure. However, this may not be true. Preliminary images of autoclaved <i>Escherichia coli</i> DH5α cells under scanning electron microscopy imaging revealed the surprising finding of intact rod-shaped cells. Autoclave conditions were 121 <sup>o</sup>C for 15 minutes. Although the images are not of high quality and are blurry, intact rod-shaped cells were still clearly discernible from the images, especially at high magnification. Such a result suggests that the thin peptidoglycan layer in the <i>E. coli</i> double membrane cell envelope possess surprising amount of strength to withstand elevated pressure during autoclave sterilization. Finally, the result is also suggestive of hitherto unknown structural and design features of the peptidoglycan and cell envelope of <i>E. coli</i> that afford the bacterium increased resistance to high pressure.
DOI: 10.6084/m9.figshare.23638367.v1
title: Experimental Videos for "Exploring the criticality hypothesis using programmable swarm robots with Vicsek-like interactions"

description: A widely mentioned but not experimentally confirmed view (known as the ‘criticality hypothesis’) argues that biological swarm systems gain optimal responsiveness to perturbations and information processing capabilities by operating near the critical state where an ordered-to-disordered state transition occurs. However, various factors can induce the ordered–disordered transition, and the explicit relationship between these factors and the criticality is still unclear. Here, we present an experimental validation for criticality hypothesis by employing real programmable swarm-robotic systems (up to 50 robots) governed by Vicsek-like interactions, subject to time-varying stimulus-response and hazard avoidance. We find that (i) not all ordered–disordered motion transitions correspond to the functional advantages for groups; (ii) collective response of groups is maximized near the critical state induced by alignment weight or scale rather than noise and other non-alignment factors; and (iii) those non-alignment factors act to highlight the functional advantages of alignment-induced criticality. These results suggest that the adjustability of velocity or directional coupling between individuals plays an essential role in the acquisition of maximizing collective response by criticality. Our results contribute to understanding the adjustment strategies of animal interactions from a perspective of criticality and provide insights into the design and control of swarm robotics.
DOI: 10.6084/m9.figshare.27165168.v1
title: Data and Code for <b>Regulation of humid heat by</b><b> </b><b>urban greenspace</b><b> </b><b>across a climate wetness gradient</b>

description: Greenspaces are a common strategy for adaptation to urban warming. While they have been demonstrated to reduce air temperature, much less is known about their effect on air humidity. Because human heat stress is contributed by both temperature and humidity, it is important to quantify the relationship between the effects of both. Using mobile measurements in 15 cities, we show that the daytime temperature effect is negatively correlated with the humidity effect, resulting in an insignificant change in the wet-bulb temperature or humid heat. A net reduction in humid heat was observed at night in intermediate (summer precipitation: 180 to 570 mm) and wet climates (summer precipitation &gt; 570 mm). A model simulation revealed that the nighttime reduction resulted mostly from reduction in soil heat storage in vegetated land. These nuanced microclimate responses to urban vegetation caution against a one-size-fits-all solution to climate adaptation.
DOI: 10.6084/m9.figshare.27601101.v7
title: Children and Adolescents Meibomian Glands (CAMG) Dataset

description: This dataset includes 1,114 infrared images of upper eyelid meibomian glands collected between June 2020 and July 2024 in 600 participants aged 4 to 18 years. Images were pre-processed including denoising and normalized and manually annotated by 3 junior ophthalmologists and 1 senior ophthalmologist. Subsequently, segmentation is performed using an AI algorithm, and the results are reviewed and corrected by an experienced ophthalmologist. The dataset also includes demographic data and various quantitative parameters of meibomian glands. In addition, we also provide meibomian gland parameters for children and adolescents of different ages and genders to inform clinical practice.
DOI: 10.17632/gnhjwsf6jf
title: Thermal and optical behaviour data of surfaces coated with high reflectance and common materials used in Brazil under different conditions

description: This dataset contains raw temperature measurement data of external, internal surfaces and air in the interior of a structure under different conditions. It has also surface thermographic images of different types of coatings and diffuses reflectance data for these materials. It has amplified images of the surfaces.
DOI: 10.6084/m9.figshare.21520848.v1
title: Horse track displaying Frog

description: Horse footprint showing a 'frog' to the rear. Photos collected with Galaxy Fold 3, model generated with Reality Capture
DOI: 10.6084/m9.figshare.21995651.v1
title: Supplementary Material for: Anabolic Androgenic Steroid Use Patterns and Steroid Use Disorders in a Sample of Male Gym Visitors

description: <b><i>Introduction:</i></b> The use of anabolic androgenic steroids (AAS) and other image- and performance-enhancing drugs is a growing public health concern. AAS use is associated with various physical and mental harms, including cardiovascular risks, cognitive deficiencies, and dependence. The aim of this study was to determine whether patterns of AAS use and other variables are associated with the presence of an AAS use disorder (AASUD). <b><i>Methods:</i></b> An online survey was completed by 103 male AAS consumers visiting gyms. The association of different patterns of AAS consumption (cycling vs. continuous forms of AAS use), psychoactive substance use, mental health disorders, and sociodemographic variables with moderate-severe AASUD (fifth edition of the Diagnostic and Statistical Manual of Mental Disorders ≥4 criteria) was investigated. The associations between duration of AAS use and the AAS dose with moderate-severe AASUD were investigated using logistic regression analysis with moderate-severe AASUD as the dependent variable. <b><i>Results:</i></b> Moderate-severe AASUD was present in 25 (24.3%) of the participants. AAS consumers meeting criteria for moderate-severe AASUD, compared to those that did not, in the last 12 months reported a longer duration of AAS use (in weeks), a higher average AAS dose (mg/week), and a greater number of AAS side effects. Duration of AAS use and the AAS dose were the only independent predictors, with an increase of 3.4% in the probability of moderate-severe AASUD with every week increase of the duration of AAS use in the last year (<i>p</i> &lt; 0.05) and an increase in moderate-severe AASUD of 0.1% with every 10 mg increase in the average AAS dose per week (<i>p</i> &lt; 0.05), respectively. <b><i>Conclusion:</i></b> Our findings show that moderate-severe AASUD is relatively frequent among male AAS consumers and is positively associated with the duration and average dose of AAS use in the last 12 months.
DOI: 10.6084/m9.figshare.23584812.v1
title: <strong>Range shifts of </strong><em><strong>Aedes aegypti</strong></em><strong> and </strong><em><strong>Ae. albopictus</strong></em>

description: <strong>Range shifts of </strong><em><strong>Aedes aegypti</strong></em><strong> and </strong><em><strong>Ae. albopictus </strong></em><strong>suggest that the latecomer shows a greater invasiveness</strong>
DOI: 10.6084/m9.figshare.28054031.v1
title: Analgesic effect of simultaneously targeting multiple pain processing brain circuits in an aged humanized mouse model of chronic pain by transcranial focused ultrasound (Ultrasound Characterizations: Ex-vivo Scanning)

description: We have demonstrated a more accessible, non-invasive transcranial focused ultrasound pain treatment strategy for senior subjects. This approach involves simultaneously targeting multiple pain-processing circuits using a battery-powered, compact, and low-cost ultrasound analog front end.The dataset includes 2 .mat files with formatted transcranial focused ultrasound pressure scanned through hydrophone in the free water and presence of a freshly excised mouse skull sample (3-dimensional variable: <b>Intensity_locations</b>). Each file name is labeled with the scanning scenarios, i.e., free water vs. mouse skull along with custom-built and battery-operated ultrasound analog front end. The spatial step sizes of the 3D matrix (<b>Intensity_locations</b>) are included in each of these files (variables: step for x and y dimensions, slice for z dimension, physical unit: mm). The pulse duration (PD) is 200 micro-second, and center frequency of the transducer is 500 kHz. The variables <b>xaxis_locations, yaxis_locations, </b>and<b> zaxis_locations</b> described the total step/slice numbers along those three directions.This work was supported in part by NIH EB029354, NS124564, NS131069, and HL147562. More information can be found in the corresponding manuscript:Kim MG, Yeh C-Y, Yu K, Li Z, Gupta K, He B. Analgesic effect of simultaneously targeting multiple pain processing brain circuits in an aged humanized mouse model of chronic pain by transcranial focused ultrasound. APL Bioengineering.If anyone uses the whole or part of the dataset provided here, we kindly ask you to cite the above publication in any of your publications or presentations.
DOI: 10.17632/6bs26yndc5
title: Higher education-induced environmental Kuznets curve: the case of Morocco

description: Secondary data
DOI: 10.17632/pmjy5cww57
title: Data for Shifted flood and ecology regimes due to channel bar greening and increased flow resistance in a large dammed river

description: Data for channel and bar dynamics and flow resistance analysis in “Shifted flood and ecology regimes due to channel bar greening and increased flow resistance in a large dammed river”.
DOI: 10.6084/m9.figshare.14075372.v12
title: RNAseq_Goodwin et al_Feb2021

description: RNAseq data supporting the Goodwin et al manuscript
DOI: 10.6084/m9.figshare.28512599.v3
title: 企业数字化转型.xlsx

description: 企业数字化转型程度
DOI: 10.6084/m9.figshare.5573647.v6
title: Template to provide grant data

description: Template to provide grant data to Europe PMC, notes on second sheet.