cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/c446wsgj7x
title: Data for: Temporal Pass Plots: an intuitive method for visualising activity patterns of bats and other vocalising animals

description: Temporal activity patterns can potentially reveal useful information about behaviour, phenological changes and emergence times for bat species; however, detailed assessments of temporal activity are infrequently performed or published for bats. Passive electronic devices, such as autonomous recording units and camera traps, are increasingly being used as a means of monitoring various species, communities and habitats. Data recorded by these devices inherently contain file metadata detailing the dates and times when data capture took place. We have utilised this metadata to create the Temporal Pass Plot (TPP), which provides intuitive, yet highly detailed, visualisations of temporal bat activity over prolonged periods of time. Furthermore, TPPs are produced using a common scale based upon activity within predetermined time-blocks, enabling direct comparisons between different sites and species to be performed. TPPs reveal inter- and intra-specific differences, and seasonal changes, in temporal activity. As a relatively untapped area of research, further study is required to evaluate associations between activity patterns and different behaviours (e.g. roosting, commuting and swarming). However, if this can be achieved, the scope of assessments that could be performed with passive monitoring technologies could be significantly expanded, enabling more detailed evaluations of habitat use to be performed with minimal disturbance to the target species. Although the TPP was principally designed for the purpose of studying bat activity, it can easily be adapted for other species that can are monitored using autonomous recording devices. Article data: This folder contains the data files used to create all three Temporal Pass Plots shown in the main article. Vignette data: This folder contains all files described in the TPP vignette, which is provided in the supplementary materials of the main article.
DOI: 10.6084/m9.figshare.28853474.v1
title: Anat Politics DATA for Publish Trimmed 020823 N=558 (9).sav

description: <b>Fake News and Political Endorsement</b>
DOI: 10.6084/m9.figshare.3512510.v1
title: Appendix A. Scatterplot and correlation matrix of the abiotic input data, comprising the 18 different predictors for the RIVPACS and GLM models.

description: Scatterplot and correlation matrix of the abiotic input data, comprising the 18 different predictors for the RIVPACS and GLM models.
DOI: 10.6084/m9.figshare.14797368.v1
title: Supplementary Material for: Association of Immunosuppressants with Mortality of Patients with Bullous Pemphigoid: A Nationwide Population-Based Cohort Study

description: <b><i>Background:</i></b> Bullous pemphigoid (BP) is a common autoimmune blistering skin disease with substantial mortality. <b><i>Objective:</i></b> To identify whether the use of immunosuppressants was associated with reduced mortality in BP patients. <b><i>Methods:</i></b> The data for this study were obtained from the National Health Insurance Research Database in Taiwan from January 1, 1997 to December 31, 2013. Those BP patients receiving any immunosuppressant for ≥28 days per month for 3 consecutive months were defined as the immunosuppressant cohort. In total, 452 BP patients on immunosuppressants were matched 1:4 by age, sex, propensity score of comorbidities, and use of tetracycline with 1,808 BP patients taking only corticosteroids. <b><i>Results:</i></b> The immunosuppressant cohort had a significantly lower 5-year mortality rate than the corticosteroid cohort (0.57 vs. 0.67). In the multivariable regression analysis adjusted for covariates, the use of immunosuppressants significantly reduced the risk of mortality (hazard ratio [HR]: 0.78, 95% confidence interval [CI]: 0.68–0.90, <i>p</i> &lt; 0.001). Hyperlipidemia also reduced risk of mortality. However, age, diabetes, renal disease, chronic obstructive pulmonary disease, cerebrovascular disease, and dementia were significant risk factors for mortality. In the subgroup analysis, the risk of mortality decreased most substantially in those aged &lt;70 years (HR: 0.45, 95% CI: 0.28–0.72). <b><i>Conclusion:</i></b> Immunosuppressant use was associated with a 22% reduced risk of BP mortality. The effects were more substantial in those aged &lt;70 years, with a 55% reduced risk of mortality.
DOI: 10.6084/m9.figshare.19362029.v1
title: Appendix S1: Correspondence and aggregation for Tracheophyte names

description: This dataset contains only the work of taxonomic attributions for tracheophytes realized by the expert Dr. Pascal Vittoz. We concatenate, aggregate 2212 tracheophytes species observed into the rechalp area (Vaud prealp, Vaud Canton - Switzerland) into a list of 1817 sp. <br> Appendix from Rey et al 2023 <strong>Article Title : </strong>Linking plant and vertebrate species to Nature’s Contributions to People in the Swiss Alps<br> <strong>DOI : </strong>10.1038/s41598-023-34236-2 <br>
DOI: 10.6084/m9.figshare.21776924.v1
title: Supplementary Material for: Clinical efficacy and safety of nivolumab in malignant non-pleural mesothelioma: A multicenter, open-label, single-arm, Japanese phase II trial (VIOLA) protocol

description: Background: There is no authorized treatment for malignant non-pleural mesothelioma (MNPM) worldwide. In contrast to malignant pleural mesothelioma (MPM), MNPM has not been investigated, and no treatment has been established due to its rarity. Objectives: This multicenter, open-label, single-arm, Japanese phase II trial aims at evaluating the efficacy and safety of nivolumab, an immune checkpoint inhibitor, in advanced or metastatic MNPM treatment. Methods: This phase II trial commenced in October 2020. Twenty-three patients with advanced or metastatic MNPM who meet the inclusion and exclusion criteria were enrolled from five institutions within 2 years. Regardless of prior therapy, 240 mg of nivolumab will be administered intravenously to MNPM patients every 2 weeks to investigate its efficacy and safety until disease progression or unacceptable toxicities are detected, or the patient’s condition meets the withdrawal criteria. Results: The primary endpoint is the objective response rate by central assessment following the Response Evaluation Criteria in Solid Tumors version 1.1. The secondary endpoints include disease control rate, overall survival, progression-free survival, adverse events, and treatment-related adverse events. Conclusions: This is the first prospective investigator-initiated trial to evaluate the effect of nivolumab monotherapy for MNPM.
DOI: 10.6084/m9.figshare.21197173.v1
title: Retinal photoplethysmography study dataset

description: The dataset is related to PLOS ONE article: <br> "Odstrcilik, J., et al. Comparative analysis of retinal photoplethysmographic spatial maps and thickness of retinal nerve fiber layer." <br> Each file is stored in Matlab memory format (*.MAT), which can be loaded either directly via MATLAB computing software or alternatively in Python programming software. <br> File description: <br> PAA_original_maps_plosone.mat <em> - image matrices (format: double), each for a single subject involved in the study</em> Blood_vessels_BW_templates_plosone.mat <em> - image matrices (format: binary), each for a single subject involved in the study</em> ONH_BW_templates_plosone.mat <em> - image matrices (format: binary), each for a single subject involved in the study</em> RNFL_circular_OCT_scans_plosone.mat <em> - matrix (format: double) with RNFL circular scans for a single subject involved in the study</em> Diagnoses_key_plosone.mat <em> - diagnoses key - a vector of diagnoses groups (format: integer) for a single subject involved in the study</em> <br> For more information, please refer to respective article in PLOS ONE journal or contact the author.
DOI: 10.6084/m9.figshare.28027733.v2
title: Dataset

description: In this study, the effects of morphological characteristics on the fresh herbage yield of sorghum x sudangrass hybrid grown under different irrigation levels in Konya were analyzed using various data mining methods, including Artificial Neural Networks (ANN), Automatic Linear Model (ALM), Random Forest (RF), and Multivariate Adaptive Regression Spline (MARS) algorithms. Descriptive statistics such as plant height, stem diameter, and crude protein content were calculated, and model fit was evaluated using metrics like R², RMSE, and MAPE. The results demonstrated that the MARS algorithm, with the lowest error values and the highest fit (R² = 0.995), was the best model for predicting fresh herbage yield. These findings indicate that the MARS algorithm provides a strong alternative to other methods.
DOI: 10.6084/m9.figshare.28278947.v1
title: Global Surface Water Supply and Demand (1985 to 2020) Summarized in Watershed Basins

description: Data associated with manuscript: Historical Trends in Snowmelt Used for Irrigation by Kinnebrew et al. 2025, <i>Environmental Research: Food Systems </i>(https://doi.org/10.1088/2976-601X/adacec).These data represent surface water runoff (supply) and consumption (demand) from 1985 to 2020, summarized within watershed basins (HydroBASINS level 3; https://www.hydrosheds.org/products/hydrobasins). Surface water runoff data were derived from TerraClimate (https://doi.org/10.5061/dryad.vx0k6dk2h), irrigation surface water consumption were derived from the Global Crop Water Model (https://doi.org/10.5281/zenodo.14278069), and domestic & industrial consumption were from Hoekstra <i>et al.</i> (2012). Please see the manuscript methods for additional information.<br><b>Column names and descriptions:</b>1. <b>watershedNum:</b> the HUC12 identifier number from HydroBASINS level 32. <b>year:</b> data year, from 1985 to 20203. <b>month:</b> data month, e.g., 1 (January), 2 (February), 3 (March), etc.4. <b>CropWaterDemand_km3: </b>surface water irrigation consumption (in km<sup>3</sup>)5. <b>DomIndWaterDemand_km3:</b> surface water consumption (in km<sup>3</sup>) from domestic and industrial sources6. <b>TotalDemand_km3:</b> combined water consumption (in km<sup>3</sup>) from irrigation, domestic, and industrial sources7. <b>SnowRO_km3:</b> snowmelt runoff (in km<sup>3</sup>)8. <b>RainRO_km3:</b> rainfall runoff (in km<sup>3</sup>)9. <b>TotalRO_km3:</b> combined snowmelt and rainfall runoff (in km<sup>3</sup>)10. <b>SnowConsumed_TotDemand_km3:</b> snowmelt runoff (in km<sup>3</sup>) that supplied total (irrigation, industrial, and domestic) water consumption11. <b>RainConsumed_TotDemand_km3: </b>rainfall runoff (in km<sup>3</sup>) that supplied total (irrigation, industrial, and domestic) water consumption12. <b>AltConsumed_TotDemand_km3:</b> alternative water sources (in km<sup>3</sup>) that supplied total (irrigation, industrial, and domestic) water consumption13. <b>SnowConsumed_CropDemand_km3:</b> snowmelt runoff (in km<sup>3</sup>) that supplied irrigation water consumption14. <b>RainConsumed_CropDemand_km3:</b> rainfall runoff (in km<sup>3</sup>) that supplied irrigation water consumption15. <b>AltConsumed_CropDemand_km3:</b> alternative water sources (in km<sup>3</sup>) that supplied irrigation water consumption
DOI: 10.6084/m9.figshare.9178061.v1
title: Genomic sequencing of Phyllosticta citriasiana provide insight into its conservation and diversification with other closely related Phyllosticta species associated with citrus

description: Phyllosticta citriasiana related annotation
DOI: 10.6084/m9.figshare.10025060.v1
title: DeepSSN: a deep convolutional neural network to assess spatial scene similarity

description: Spatial-query-by-sketch is an intuitive tool to explore human spatial knowledge about geographic environments and to support communication with scene database queries. However, traditional sketch-based spatial search methods perform insufficiently due to their inability to find hidden multi-scale map features from mental sketches. In this research, we propose a deep convolutional neural network, namely Deep Spatial Scene Network (DeepSSN), to better assess the spatial scene similarity. In DeepSSN, a triplet loss function is designed as a comprehensive distance metric to support the similarity assessment. A positive and negative example mining strategy is designed to ensure a consistently increasing distinction of triplets during the training process. Moreover, we develop a prototype spatial scene search system using the proposed DeepSSN, in which the users input spatial query via sketch maps and the system can automatically augment the sketch training data. The proposed model is validated using multi-source conflated map data including 131,300 labeled scene samples after data augmentation. The empirical results demonstrate that the DeepSSN outperforms baseline methods including k-nearest-neighbors, multilayer perceptron, AlexNet, DenseNet, and ResNet using mean reciprocal rank and precision metrics. This research advances geographic information retrieval studies by introducing a novel deep learning method tailored to spatial scene queries. <br>
DOI: 10.6084/m9.figshare.13121846.v1
title: Cannabis and Psychedelics User Survey questionnaire and dataset

description: Survey questionnaire PDF + dataset as SPSS .sav file<br>
DOI: 10.6084/m9.figshare.2283733.v1
title: Screen-peck task 1

description: Percentage of cues pecked and latency to peck data for screen-peck task 1 (no affect manipulation). Data are means where birds see 17 P cues, 2 NP cues, 2 M cues, 1 NN cues and 17 N cues per session. To calculate an average measure, the total latency (counted as 10s if the cue was not pecked) was divided by the number of trials in which a peck occurred. P and N latencies were only available for the last 3 sessions (percenatge pecked data was available for all 6 sessions).
DOI: 10.6084/m9.figshare.5120509.v1
title: Supplementary Material for: Two faces of Solanaceae telomeres: a comparison between <i>Nicotiana</i> and <i>Cestrum</i> telomeres and telomere-binding proteins

description: While most Solanaceae genera (e.g.<i>Solanum, Nicotiana</i>) possess <i>Arabidopsis</i>-type telomeres of (TTTAGGG)n maintained by telomerase, the genera <i>Cestrum, Vestia</i> and <i>Sessea</i> (<i>Cestrum </i>group) lack these telomeres. Here we show that in the <i>Cestrum</i>-group the activity of telomerase has been lost. Nevertheless, proteins binding the single-stranded G-rich strand of the <i>Arabidopsis</i>-type and related human-type (TTAGGG)n telomeric sequences are present in nuclear extracts of both <i>Nicotiana</i> and <i>Cestrum </i>species. These proteins may have a role in telomere function or other cellular activities. In addition to characterizing DNA binding specificity and molecular weights of these proteins, we searched in both <i>N. tabacum </i>(tobacco) and <i>C. parqui </i>for the presence of POT1-like proteins, involved in telomere capping and telomerase regulation. Analysis of POT1-like proteins available on public databases and cloned by us from <i>C. parqui, </i>revealed the N-terminal OB folds typical for this protein family and a novel, plant-specific conserved C-terminal OB-fold domain (CTOB). We propose that CTOB is involved in protein-protein interactions.
DOI: 10.17632/dp8vszy39t
title: Automation of the lifting factorisation of wavelet transforms

description: Abstract Wavelets are sets of basis functions used in the analysis of signals and images. In contrast to Fourier analysis, wavelets have both spatial and frequency localization, making them useful for the analysis of sharply-varying or non-periodic signals. The lifting scheme for finding the discrete wavelet transform was demonstrated by Daubechies and Sweldens (1996). In particular, they showed that this method depends on the factorization of polyphase matrices, whose entries are Laurent polynomials,... Title of program: LiftingFactorisation.nb 1.0 Catalogue Id: ADLE_v1_0 Nature of problem Spectral analysis and compression of signals or images. Versions of this program held in the CPC repository in Mendeley Data ADLE_v1_0; LiftingFactorisation.nb 1.0; 10.1016/S0010-4655(99)00451-8 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.6084/m9.figshare.20673255.v3
title: Replication Package of the study "Exploring the Notion of Risk in Reviewer Recommendation"

description: Description <strong>This is a Dockerized version of the repository https://github.com/software-rebels/RAR_Recommender . The package is developed to ease the replication of our study for researchers and practitioners.</strong> <br> This package contains the necessary information to replicate the study "Exploring the Notion of Risk in Reviewer Recommendation." This code extends the RelationalGit package (https://github.com/CESEL/RelationalGit) from the study of E. Mirsaeedi and P. C. Rigby [1]. It adds some functionality needed to incorporate the concept of the fix-inducing likelihood of a project. In addition to our dataset, this repository also has the supporting materials for our study. The supporting materials are in the "ICSME_online_materials_ICSME.pdf" and contain the following items: Table 1 contains the detail of the dataset and some related statistics for each studied project. Table 2 shows the risk measures used in our defect prediction model. We use Commit Guru Tool to extract the data from the GitHub repositories and then use this data to train our defect prediction model. Figure 1 illustrates the distribution of predicted defect probability of different projects. This distribution shows how the defect probability of different periods is similar to the adjacent periods. Replication Steps: Read Requirements.md and ensure the necessary software/hardware requirements. Read Install.md and install the necessary packages to run the containers. Follow the steps in ReadMe.md to reproduce the results of our study. References: [1] E. Mirsaeedi and P. C. Rigby, 'Mitigating turnover with code review recommendation: Balancing expertise, workload, and knowledge distribution', στο Proceedings of the ACM/IEEE 42nd International Conference on Software Engineering, 2020.
DOI: 10.6084/m9.figshare.26368948.v1
title: Supplementary Material for: Waterpipe tobacco smoking and multiple sclerosis: a systematic review and meta-analysis

description: Background: Multiple sclerosis (MS), as an autoimmune disease of the central nervous system (CNS), has a significant burden among people worldwide. Tobacco smoking is one of the most prevalent habits of patients with different diseases including those with MS and among the methods of use, waterpipe tobacco smoking is gaining popularity. Herein, we aimed to systematically evaluate the association between waterpipe smoking and MS. 
Methods: Relevant studies were identified to be included in this systematic review and meta-analysis through a systematic search in PubMed, Scopus, Web of Science, and Embase. Studies were screened by title/abstract and then by their full text. Extraction of data was performed for relevant studies. Odds ratios (OR) and their 95% confidence intervals (CIs) of the association between waterpipe smoking and MS were used to pool the results observed in each study. 
Results: After the screening, a total of five studies were included in our systematic review, comprised of 3087 individuals, among which there were 1135 cases with MS. Random-effect meta-analysis revealed that ever-smoking waterpipe had a significant association with MS (OR 1.73, 95% CI 1.38-2.17, p-value &lt;0.0001). Similarly, past waterpipe smoking was significantly higher in those with MS, compared with controls (OR 2.17, 95% CI 1.61-2.92, p-value &lt; 0.0001). Based on the reported results, smoking both tobacco and waterpipe had an additive association with MS. Finally, no association was found between the Expanded Disability Status Scale (EDSS) and waterpipe smoking. 
Conclusion: Waterpipe as one of the common ways of tobacco smoking becoming popular has an association with MS and even the use of waterpipe for a certain period in the lifetime has a significant correlation with MS. Further large-scale studies are needed to confirm these findings. These results could help clinicians in risk-stratifying the patients and to provide better care for the MS population.
DOI: 10.6084/m9.figshare.26413861.v1
title: Data of Low-Level Jet and Internal Gravity Waves in the Zhongchuan International Airport in China

description: This dataset was obtained using Lidar, wind profiling radar, eddy covariance system, and conventional automatic meteorological observation system (AMS) at the Atmospheric Physics and Atmospheric Environment Continuous Observation Station at the Lanzhou-Zhongchuan International Airport (36°31′N, 103°36′E), China. Observations were made during the night of 2021.09.25-26 (19:00-07:00) for case 1 and during the night of 2022.05.23-24 (19:00-07:00) for case 2.
DOI: 10.6084/m9.figshare.27879981.v1
title: Misophonia tools systematic review data

description: This file contains the data from our systematic review on misophonia assessment tools, including general characteristics of each tool and psychometric properties.
DOI: 10.6084/m9.figshare.22001908.v1
title: 3D Model Dataset of Persimmon Fruit

description: This dataset features 2,380 3D models of persimmon fruit from 51 diverse cultivars at different stages of development. The 3D models were captured using a 3D Scanner Coordinate Measuring Machine (VL-500; KEYENCE, Osaka, Japan). For more information, refer to Kusumi et al. (2023).
DOI: 10.6084/m9.figshare.17068328.v3
title: Database

description: Data for public opinion (salience and preference) and asylum (applications, decisions, positive decisions, asylum recognition rates) for Germany and UK, plus appeal success rates for UK.
DOI: 10.6084/m9.figshare.22559599.v1
title: Larger Black Carp Prefers A Lower Satiation to Fulfill Its Need for An Active Post-Prandial Movement Regulation in An Unfamiliar Environment

description: There are all raw data and original code calculated and analyzed in this study.
DOI: 10.6084/m9.figshare.4047489.v1
title: Supplementary Material for: Demineralized Dentin Matrix Induces Odontoblastic Differentiation of Dental Pulp Stem Cells

description: <br>The aim of this study was to investigate the effect of demineralized dentin matrix (DDM) on dental pulp stem cells (DPSCs) and the potential of complexes with DPSCs and DDM for mineralized tissue formation. Stem cells derived from the dental pulp of healthy pigs aged 18 months were isolated and cultured. DPSCs were incubated with alpha-minimum essential medium treated with DDM extract at 1 mg/ml (DDM1) or 10 mg/ml (DDM10). The concentrations of 3 growth factors in DDM extract was measured by enzyme-linked immunosorbent assay. Adhesion of DPSCs on DDM and hydroxyapatite-tricalcium phosphate (HA-TCP) surfaces was observed using scanning electron microscopy. Cell proliferation was evaluated with cell counting kit-8 and migration by Transwell migration assays. Odontoblastic differentiation was assessed by alkaline phosphatase (ALP) and alizarin red staining, ALP activity and real-time polymerase chain reaction analysis of markers of ALP, runt-related transcription factor 2, type I collagen, dentin matrix acidic phosphoprotein-1, osteonectin and dentin sialophosphoprotein (DSPP). Finally, DPSCs were combined with DDM and placed subcutaneously in nude mice for 12 weeks; DPSCs combined with HA-TCP and DDM alone served as controls. DDM could promote DPSC adhesion, migration and odontoblastic differentiation. Mineralized tissue formation was observed with the DPSC and DDM combination and the DPSC and HA-TCP combination. The mineralized tissue of the DPSC + DDM combination stained positive for DSPP, similar to the dentin tissue. These results indicate that DDM induces DPSC odontoblastic differentiation, suggesting applications for dentin regeneration.
DOI: 10.17632/p2gy9hdfgn
title: Data for: Experimental investigation on improving steam sweep efficiency by novel particles in heavy oil reservoirs

description: The experimental data in the manuscript