cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/jzga1-k5x59
title: HeLa (Kyoto) - PM damaged

description: HeLa cell stably expresses CHMP4B-EGFP at low levels (courtesy MPI). grid - WY41_grid3.
description: <strong>Tilt Series Date:</strong> 2018-05-15</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD, tomo3D</p>
<strong>Collaborators and Roles:</strong> HeLa cell line courtesy of Max Planck Institute (MPI). Wei Yang grew cells on grids, caused plasma membrane damage using Laser and froze. Shrawan performed CLEM and ECT.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown on R2/2 quantifoil gold grids treated with 0.1 mg/mL fibronectin.</p>
<strong>Sample Preparation:</strong> Laser - 640nm, 100%, 35 cycles, speed 7, Damaged area - 1.5umx1.5um. Cells were treated with 1.3uM AlPcS3a ~10 min before damage.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-05-15-7/rawdata/</p>TS10.mrc,  Tilt Series (Pixel Size 0.541 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-05-15-7/rawdata/TS10.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS10_4bin_SIRTl20_rotx.rec,  Reconstruction (Pixel Size 0.0 nm), 1.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2018-05-15-7/3dimage_102281/TS10_4bin_SIRTl20_rotx.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k9ykw-hp295
title: Legionella IcmQ71::TevS 42C_On

description: Legionella IcmQ71::TevS 42C_On (HS004 E)
description: <strong>Tilt Series Date:</strong> 2019-05-31</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Howard Shuman (University of Chicago). Data collected by Debnath Ghosal and Yuxi Liu.</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, Blot force 6, blot time 3 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-31-45/rawdata/</p>HS004E-area8-tomo0002.mrc,  Tilt Series (Pixel Size 0.26 nm), 996.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-31-45/rawdata/HS004E-area8-tomo0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        HS004E-area8-tomo0002_full.rec,  Reconstruction (Pixel Size 1.04 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2019-05-31-45/3dimage_103720/HS004E-area8-tomo0002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p21cj-60b92
title: Ecoli_EPEC_8609

description: EPEC cells strain 8609 (has the conjugation pilus, the bundle-forming pilus but lack the core  .  complex). The aim is to see whether these cells make similar membrane tubes as to those .  observed in EPEC 8612
description: <strong>Tilt Series Date:</strong> 2020-02-25</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 8609, EPEC ΔLEE ΔflhBA ΔfliOPQR ΔminCD</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 115.0 eV/Å²,  defocus: -6.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Samples prepared with Ritesh and Amit (from Ilan Rosenshine and Sigal ben Yehuda labs at the . Hebrew university).</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Samples were prepared as EPEC 8612 (see these tomograms).</p>
<strong>Sample Preparation:</strong> Similar to what is described for EPEC 8612 tomograms.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-28/rawdata/</p>EPEC_8609_018_af.mrc,  Tilt Series (Pixel Size 0.449 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-28/rawdata/EPEC_8609_018_af.mrc"
        > <i class="download icon"></i> Download </a></p>

        EPEC_8609_018_af_full.rec,  Reconstruction (Pixel Size 1.796 nm), 737.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-02-25-28/3dimage_111707/EPEC_8609_018_af_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wztvs-eg892
title: Shewanella oneidensis MR-1

description: Raw data files of Shewanella oneidensis MR-1
description: <strong>Tilt Series Date:</strong> 2018-05-22</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells were prepared in chemostat (2 days) by Sahand from Moh's group in USC.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> These are fixed cells prepared in chemostat (2 days). Poorna has prepared these grids but they were not good (only few cells present per grid). I imaged them on the Polara to check if they have "iron cores" so that I send them to Sharon in Weizmann Institute.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-05-22-7/rawdata/</p>tilt7.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-05-22-7/rawdata/tilt7.mrc"
        > <i class="download icon"></i> Download </a></p>

        tilt7_full.rec,  Reconstruction (Pixel Size 1.56 nm), 533.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2018-05-22-7/3dimage_92658/tilt7_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.98gq9q
title: Occurrence Download

description: A dataset containing 1312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((6.328125 46.10371, 10.283203 46.10371, 10.283203 47.39835, 6.328125 47.39835, 6.328125 46.10371))",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2000"
 ]
}

 The dataset includes 1312 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022585-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8w5qdj
title: Occurrence Download

description: A dataset containing 1421 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrocylindropuntia cylindrica (Lam.) Backeb."
 ]
}

 The dataset includes 1421 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022582-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ngmqh
title: CCDC 2456927: Experimental Crystal Structure Determination

description: Related Article: Gautam Kumar|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e229021
title: Data and Code for "Artificial Intelligence Makes Firm Operating Performance Less Volatile"

description: This paper examines how AI investments are related to the second moment of firms' operating performance: the volatility of their sales, earnings, and cash flows.
DOI: 10.3886/e229021v1
title: Data and Code for "Artificial Intelligence Makes Firm Operating Performance Less Volatile"

description: This paper examines how AI investments are related to the second moment of firms' operating performance: the volatility of their sales, earnings, and cash flows.
DOI: 10.15468/dl.cs54zx
title: Occurrence Download

description: A dataset containing 1222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-124.431 50.313, -124 50.313, -124 50.711, -124.431 50.711, -124.431 50.313))",
 "EventDate is greater than or equal to 1900-01-01",
 "EventDate is less than or equal to 2025-06-06"
 ]
}

 The dataset includes 1222 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022930-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah63dy
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Copris hispanus hispanus"
 ]
}

 The dataset's 4 records were derived from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022919-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15576995
title: Diplotaxodon genome-wide SNP data

description: This dataset is part of the study "Widespread genetic signals of visual system adaptation in deepwater cichlid fishes" [DOI to be added upon publication] and contains single nucleotide polymorphism (SNP) data in Variant Call Format (VCF) for 79 Diplotaxodon samples (see Supplementary Data 3 of the publication). Please cite the original study when using these data.

Checksums provided for individual data files for integrity verification.

This dataset accompanies the archived code and data available at https://doi.org/10.5281/zenodo.15602855.

This data is made available on an open access basis for research use only. Any person who wishes to use this data for any form of commercial purpose must first enter into a commercial licensing and benefit sharing arrangement with the Government of Malawi.
DOI: 10.5281/zenodo.15576996
title: Diplotaxodon genome-wide SNP data

description: This dataset is part of the study "Widespread genetic signals of visual system adaptation in deepwater cichlid fishes" [DOI to be added upon publication] and contains single nucleotide polymorphism (SNP) data in Variant Call Format (VCF) for 79 Diplotaxodon samples (see Supplementary Data 3 of the publication). Please cite the original study when using these data.

Checksums provided for individual data files for integrity verification.

This dataset accompanies the archived code and data available at https://doi.org/10.5281/zenodo.15602855.

This data is made available on an open access basis for research use only. Any person who wishes to use this data for any form of commercial purpose must first enter into a commercial licensing and benefit sharing arrangement with the Government of Malawi.
DOI: 10.15468/dl.58hdag
title: Occurrence Download

description: A dataset containing 600 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Segregatospumella Boenigk & Grossmann, 2016"
 ]
}

 The dataset includes 600 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022868-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6073/pasta/42bea1b1870ef9e2af3eeb7c4e7561c8
title: Long-term soil properties after different biochar feedstock treatments in a Southwest Virginia Pasture, 2024

description: Biochar is an agricultural amendment that can improve soil health and promote carbon (C) sequestration. Effects of biochar can vary and depend on the biochar feedstock, method of production, soil conditions, and amendment method and frequency. These data include soil physicochemical properties from plots amended with hay, softwood, and hardwood biochar types produced under similar conditions (479°C – 522°C for 3.5-10.2 hours) with and without a nitrogen addition (porcine blood meal) in a randomized complete block design after 4.5 years. Plots were first established at the Virginia Tech Catawba Sustainability Center in Catawba, VA in June of 2019 and sampled in March 2024. Soil measurements include total nitrogen, total carbon, carbon:nitrogen ratios, gravimetric moisture, pH, electrical conductivity, dissolved inorganic nitrogen (NO3 and NH4), bulk density, and moisture from bulk density measurements. These data contribute to a long-term understanding of different biochar feedstock effects on Southwest Virginia pasture soils.
DOI: 10.15468/dl.9w9wde
title: Occurrence Download

description: A dataset containing 1892 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-6.20896 49.5346,1.49641 50.8732,2.17172 52.42656,1.98151 53.6953,-2.37896 55.39085,-4.83245 53.6953,-5.72253 51.87753,-6.20896 49.5346))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cobitis taenia Linnaeus, 1758"
 ]
}

 The dataset includes 1892 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022867-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sv2bpp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius afrohamiltoni (Crass, 1960)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.7576 -24.3688,20.529 -24.0715,20.509 -24.0715,20.509 -28.5786,25.5395 -28.5786,25.5395 -24.0715,25.1306 -24.0715,24.9333 -24.4571,23.8962 -24.2467,22.8065 -24.295,22.3719 -24.7207,22.2323 -25.547,22.0387 -25.7188,21.7833 -25.7784,21.5388 -25.7113,21.3553 -25.5415,20.7576 -24.3688))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023042-250525065834625/datasets/export for details.
DOI: 10.15468/dl.9hj2q4
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Quercus rubra",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000109-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ry8atr
title: Occurrence Download

description: A dataset containing 3327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inga Busck, 1908"
 ]
}

 The dataset includes 3327 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023148-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34894/ckrilc
title: Impact Strategy Development: Questions Bank and Interview Guide

description: &lt;table&gt;&lt;tr&gt;&lt;td&gt;&lt;p dir="ltr"&gt;The tool ‘Impact Strategy Development: Questions Bank and Interview Guide’ consists of (1) a three step interview guide and (2) an Excel file with a questions bank to use and tailor for your interviews or other methods for engaging with your community throughout the process of developing a school-level impact strategy. The package also includes a set of auxiliary materials designed to inspire and enrich conversations during the interview.&lt;/p&gt;&lt;p dir="ltr"&gt;&lt;b&gt;&lt;i&gt;Who can primarily benefit from this tool?&lt;/i&gt;&lt;/b&gt;&lt;br&gt;&lt;i&gt;Individuals and teams directly involved in the process of developing, implementing and evaluating impact strategies in their school.&lt;/i&gt;&lt;br&gt;&lt;/p&gt;&lt;p dir="ltr"&gt;&lt;b&gt;&lt;i&gt;In which context is this tool useful?&lt;/i&gt;&lt;/b&gt;&lt;br&gt;&lt;i&gt;This tool is part of the Impact Strategy Development Toolkit. Use this tool to identify relevant questions and realise interviews and other community engagement approaches during the discovery and develop phases of strategy development. &lt;/i&gt;&lt;i&gt;It is based on first-hand experience&lt;/i&gt;&lt;i&gt; &lt;/i&gt;&lt;i&gt;with defining, exploring, and aligning&lt;/i&gt;&lt;i&gt; &lt;/i&gt;&lt;i&gt;societal impact strategies with the needs and identities of&lt;/i&gt;&lt;i&gt; &lt;/i&gt;&lt;i&gt;seve&lt;/i&gt;&lt;i&gt;ral schools at Erasmus University Rotterdam.&lt;/i&gt;&lt;i&gt; &lt;/i&gt;&lt;i&gt;While the tool follows the language and organisation within Erasmus University Rotterdam, it can also be used in other contexts and institutes.&lt;/i&gt;&lt;/p&gt;&lt;/td&gt;&lt;/tr&gt;&lt;/table&gt;&lt;p&gt;&lt;/p&gt;
description: This entry is a five-file data package totaling 11.2 MB, containing files in .txt, .ods and .pdf formats.If you use this dataset, please cite: Evaluating Societal Impact (2025). Impact Strategy Development: Questions Bank and Interview Guide. Erasmus University Rotterdam (EUR). Online resource. https://doi.org/10.25397/eur.27854856
DOI: 10.17632/kzx624h8vb
title: LINF_260010700

description: Dynein light chain; Leishmania infantum (strain JPCM5)
DOI: 10.17632/kzx624h8vb.1
title: LINF_260010700

description: Dynein light chain; Leishmania infantum (strain JPCM5)
DOI: 10.17632/9g7gzmr9yh
title: LINF_260010000

description: Leucine Rich Repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.965xuw
title: Occurrence Download

description: A dataset containing 420045 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is The fossil collection (F) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 420045 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050174-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/9g7gzmr9yh.2
title: LINF_260010000

description: Leucine Rich Repeat-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/8yny7jycgz
title: An algorithm for automated extraction of resonance parameters from the stabilization method

description: The application of the stabilization method (Hazi and Taylor, 1970 [1]) to extract accurate energy and lifetimes of resonance states is challenging: The process requires labor-intensive numerical manipulation of a large number of eigenvalues of a parameter-dependent Hamiltonian matrix, followed by a fitting procedure. In this article, we present ReSMax, an efficient algorithm implemented as an open-access Python code, which offers full automation of the stabilization diagram analysis in a user-friendly environment while maintaining high numerical precision of the computed resonance characteristics. As a test case, we use ReSMax to analyze the natural parity doubly-excited resonance states (1Se, 3Se, 1Po, and 3Po) of helium, demonstrating the accuracy and efficiency of the developed methodology. The presented algorithm is applicable to a wide range of resonances in atomic, molecular, and nuclear systems.
DOI: 10.17632/8yny7jycgz.1
title: An algorithm for automated extraction of resonance parameters from the stabilization method

description: The application of the stabilization method (Hazi and Taylor, 1970 [1]) to extract accurate energy and lifetimes of resonance states is challenging: The process requires labor-intensive numerical manipulation of a large number of eigenvalues of a parameter-dependent Hamiltonian matrix, followed by a fitting procedure. In this article, we present ReSMax, an efficient algorithm implemented as an open-access Python code, which offers full automation of the stabilization diagram analysis in a user-friendly environment while maintaining high numerical precision of the computed resonance characteristics. As a test case, we use ReSMax to analyze the natural parity doubly-excited resonance states (1Se, 3Se, 1Po, and 3Po) of helium, demonstrating the accuracy and efficiency of the developed methodology. The presented algorithm is applicable to a wide range of resonances in atomic, molecular, and nuclear systems.
DOI: 10.17632/vphkrtg7p6
title: LINF_260008300

description: Cyclin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/vphkrtg7p6.1
title: LINF_260008300

description: Cyclin-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/28wh68p4b6
title: LINF_260007700

description: Mitoribosomal LSU assembly factor (mt-LAF1) | mt-EngB; Leishmania infantum (strain JPCM5)
DOI: 10.17632/28wh68p4b6.2
title: LINF_260007700

description: Mitoribosomal LSU assembly factor (mt-LAF1) | mt-EngB; Leishmania infantum (strain JPCM5)