cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.47d7wm3r8
title: Causes and consequences of material variation in avian nest building

description: Houses around the world are built with a variety of materials like timber
 and brick, depending on a number of factors such as local climate and
 material availability. Similarly, non-human animals such as birds use
 diverse materials to build nests. Very little is known about how animals
 choose nest materials, and how these choices, in turn, affect the function
 of the nests they build. As an initial attempt to address this question,
 we investigated the causes and consequences of nest-material use by
 Dartford warblers (Sylvia undata). The warblers breeding in England show
 considerable variation in nest materials: some nests are made almost
 entirely of heather, while others contain a lot of grass. We found that
 the warblers’ use of nest materials were explained by the composition of
 the local habitats, but no evidence for relationships between
 nest-material composition and insulation capacity or the breeding
 performance. Warblers appear to be able to build equally functional nests
 using whatever materials are readily available in respective habitats.
 Studying nest-building behaviour of individual species like Dartford
 warblers could inform how the use of diverse material in animal
 architecture evolved.
description: **READ_ME for "Causes and consequences of material variation in avian
 nest building"** "DartfordWarbler_JAB.R" contains R code to
 carry out data analysis using the following dataset.
 "NestMaterialComp.csv" contains nestID and % weight (measured in
 g) of grass, heather, moss, animal (animal-derived material including
 hair, silk, feathers), and other (including fine material that resulted
 from the larger materials disintegrating during the dismantling). Note the
 sum of % the materials does not always add up to 100% due to some
 materials being very light and measurement errors from being weighed 3
 times and then avaraged (for details see Methods).
 "Habitat_within100mBuffer.csv" contains nestID and area (in
 square metre) of the following habitat types around nests: arable and
 horticulture(AH), broadleaved woodland(BW), coniferous woodland(CW),
 heather(H), heather grassland(HG), and improved grassland(IG).
 "Insulation.csv" contains nestID and insulation quality (in
 °C/20 sec) calculated as the difference between cooling rate of iButton
 inside the nests and that of iButton outside the nest (for details see
 main text). "NestMeasurement.csv" contains nestID and
 measurements (in cm) of length, width, height, cup length, cup width and
 cup depth taken from each nest. NAs in this file are removed before the
 data are fed into the models in "DartfordWarbler_JAB.R".
 "NestDistance.csv" contains a distance matrix of physical
 distances between nest sites (in km). "EggChick.csv" contains
 nestID and the numbers of eggs and chicks that left the nestconfirmed by
 nest collectors. NAs in this file are removed before the data are fed into
 the models in "DartfordWarbler_JAB.R".
DOI: 10.5061/dryad.0000000f5
title: Dietary adaptations along the Northern limit of distribution: What does the smooth snake (Coronella austriaca) eat in Norway? Metabarcoding of stomach content and visual analysis of faeces

description: Understanding how species survive at their poleward limits of distribution
 is of interest in species conservation, particularly in light of global
 warming and predictions of shifting distributions of both predators and
 prey species. How species adapt to high latitudes and to future climate
 changes will be impacted both by direct interactions with the environment,
 such as changing heat tolerances, but also indirectly through biotic
 interactions with prey and predators. The smooth snake (Coronella
 austriaca) in Norway provides an interesting case study of biotic
 interactions at range limits. The number of potential prey species of C.
 austriaca is lower in Norway than in southern latitudes. To investigate
 trophic adaptations at its poleward range limit we used metabar-coding
 sequencing to identify prey species in stomach samples of a museum
 collection of 17 preserved C. austriaca from Agder in Southern Norway.
 Eight prey species were detected, four reptiles and four mammals. Field
 vole (Microtus agrestis) and common shrew (Sorex araneus) were the most
 common prey species, while bank vole (Myodes glareolus) and wood mice
 (Apodemus sylvaticus) were eaten only by a few smooth snakes. Slow worm
 (Anguis fragilis) was found in five samples and common lizard (Zootoca
 vivipara) in only three samples. DNA was also recovered from grass snake
 (Natrix natrix) in all but one sample, and DNA from European adder (Vipera
 berus) in one sample, indicating the role of ophiophagy. Visual analysis
 of 75 faeces from the Oslo region showed that A. fragilis was the most
 common prey species, followed by shrews. The main conclusion is that C.
 austriaca in Norway have a higher proportion of mammalian prey and snakes
 in their diet compared to populations in more southern latitudes.
description: # Dietary adaptations along the Northern limit of distribution: What does
 the smooth snake (Coronella austriaca) eat in Norway? Metabarcoding of
 stomach content and visual analysis of faeces An overview of the number of
 reads per prey species or prey group in each of the samples, sorted from
 largest to smallest number of reads across the 17 individual smooth snake
 samples.
DOI: 10.15468/dl.2q25cx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breizacanthus irenae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004275-260126135527185/datasets/export for details.
DOI: 10.15468/dl.9gvyd3
title: Occurrence Download

description: A dataset containing 303836 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bubo scandiacus"
 ]
}

 The dataset includes 303836 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004256-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqhwdf
title: Occurrence Download

description: A dataset containing 86805 records in GBIF matching the query:
SELECT
 '509' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 51.21395264452012
 AND decimalLatitude &lt;= 56.135291543055025
 AND decimalLongitude &gt;= 13.362876032781879
 AND decimalLongitude &lt;= 21.586530565057334
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 86805 records were derived from 321 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004268-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/2hixxa
title: BRAINDO GED (ACADÊMICO)
title: Publicações oriundas de pesquisas e laboratórios de sala de aula de professores ministrantes de formações profissionais e continuadas, treinamento e desenvolvimento gerencial e para o trabalho.
title: BRAINDO ACAD

description: Reositório de trabalhos acadêmicos sobre a gestão da Faculdade do Futuro por meio de parceria técnico-científica firmada com a Braindo.
DOI: 10.15468/dl.xsfnc9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breizacanthus ligur",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004277-260126135527185/datasets/export for details.
DOI: 10.5281/zenodo.17943447
title: KaML-ESM v1.0.0 ensemble weights (ESMC)
DOI: 10.5281/zenodo.18407675
title: KaML-ESM v1.0.0 ensemble weights (ESMC)
DOI: 10.15468/dl.gf7vwj
title: Occurrence Download

description: A dataset containing 7729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Urocyon cinereoargenteus"
 ]
}

 The dataset includes 7729 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004278-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/cdc.493
title: Chandra X-ray Observatory Chandra Data Collection for request #493

description: Chandra Data Collection for request #493
description: DOI updated to include the publication's DOI on 2026-01-28-18:00:00
DOI: 10.7910/dvn/kncqic
title: The Side Effects of Shadow Banking on Banks' Liquidity Provision

description: This replication package contains all the materials required to reproduce the results presented in the paper “The Side Effects of Shadow Banking on Banks' Liquidity Provision” by Teodora Paligorova and Joao Santos. The accompanying Read-Me file explains how to run the replication code. We include a Pseudo_Data sample because the data used in the paper is not publicly available.
DOI: 10.5061/dryad.jq2bvq8mb
title: A new species of Pseudosperma and first record of P. aureocitrinum (Agaricales, Inocybaceae) from Pakistan

description: During the fungal exploration from the Himalayan moist temperate forests
 of Pakistan, different fruiting bodies of the genus Pseudosperma were
 collected that resulting in one new species, i.e., Pseudosperma
 khanspuricum, and one new record, Pseudosperma aureocitrinum. Pseudosperma
 khanspuricum is characterized by its campanulate, fibrillose, smaller (up
 to 2.2 cm), brownish yellow pileus with acute umbo, larger (up to 5.2 cm)
 stipe, creamy white to light yellow lamellae, and smaller (8.9 × 5.8 µm)
 basidiospores. The second species Pseudosperma aureocitrinum has been
 reported for the first time from Pakistan. Molecular phylogenetic
 evaluation deduced from the nrDNA internal transcribed spacer region (ITS)
 and larger subunit region (LSU) validates this as a new species and a new
 record, with this addition species of Psudosperma count to be 13 from
 Pakistan.
description: # A new species of *Pseudosperma* and first record of *P. aureocitrinum*
 (Agaricales, Inocybaceae) from Pakistan Dataset DOI:
 [10.5061/dryad.jq2bvq8mb](10.5061/dryad.jq2bvq8mb) ## Description of the
 data and file structure The 2 fasta files (ITS, LSU) are the files used
 for phylogenetic analyses of Pseudosperma spp. #### File: ITS.fas
 Phylogenetic analysis of *Pseudosperma khanspuricum* (PQ637574, PQ654720,
 PQ654718)  and *Pseudosperma aureocitrinum* (PQ721832) based on ITS
 sequences using the Maximum Likelihood method. #### File: LSU.fas
 Phylogenetic analysis of *Pseudosperma khanspuricum* (PQ721844) based on
 LSU sequences using the Maximum Likelihood method. These fasta files can
 be opened in BioEdit or any other phylogenetic software.
DOI: 10.5061/dryad.wh70rxx05
title: Hohenbuehelia longicolla sp. nov. (Pleurotaceae) from Swat, Pakistan, and two new country records

description: Hohenbuehelia Schulzer is a genus of nematode-trapping, pleurotoid fungi
 that grow on a variety of substrates in forest ecosystems. Despite its
 high species diversity and complexity, it remains taxonomically
 underexplored and unrevised. In this study, morphological and phylogenetic
 analyses were conducted to confirm the identification of Hohenbuehelia
 specimens collected during a mycological survey in the district Swat,
 Pakistan. The Hohenbuehelia filolageniformis S. Hussain is
 described as a new species, while H. tremula and H. wilhelmii are reported
 as new records to the country. H. filolageniformis is morphologically and
 phylogenetically well-differentiated from other species of the genus. This
 study contributes to the understanding of the global diversity and
 distribution of Hohenbuehelia in Pakistan.
description: # Hohenbuehelia longicolla sp. nov. (Pleurotaceae) from Swat, Pakistan,
 and two new country records
 [https://doi.org/10.5061/dryad.wh70rxx05](https://doi.org/10.5061/dryad.wh70rxx05) ## Description of the data and file structure This dataset includes ITS and LSU sequence data used in the phylogenetic and morphological study of *Hohenbuehelia* longicolla sp. nov. (Pleurotaceae) from Swat, Pakistan, along with two new country records. The data was generated to assess the taxonomic placement and phylogenetic relationships of these fungal taxa within *Hohenbuehelia*. The sequences were obtained through PCR amplification and Sanger sequencing, followed by alignment and phylogenetic analysis. This dataset supports the findings of the associated research article. ### Files and variables #### File: Hohenbuehelia.fasta **Description:** This FASTA file contains ITS and LSU sequence data for *Hohenbuehelia* longicolla sp. nov. and two newly reported *Hohenbuehelia* species from Pakistan.
DOI: 10.15468/dl.z2nmax
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Corynosoma magdaleni",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004279-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.r4xgxd2qh
title: Data from: Disentangling serial chloroplast captures in willows

description: Chloroplast capture is a process through which the chloroplast of a focal
 species is replaced by the chloroplast from another species through a
 process of repeated backcrossing of an initial hybrid. Using whole genome
 sequences of nuclear and chloroplast from several species of willows
 (Salix spp.), we identify multiple chloroplast captures, and identify the
 phylogenetic relationships among these events. We present a phylogenetic
 strategy to discriminate among 1) a single chloroplast capture and
 subsequent speciation of the lineage with the captured chloroplast, 2)
 multiple chloroplast captures from the same parent species, and 3) serial
 chloroplast captures, which we define as the sequential capturing of the
 same chloroplast lineage across multiple species. Using this method, we
 identify cases of both serial chloroplast capture and speciation after
 chloroplast capture in Salix. We also show that although these chloroplast
 capture events are accompanied by signals of hybridization in the nuclear
 genomes, nuclear genes that functionally interact with chloroplast genes,
 and nuclear genes involved in photosynthesis, were no more likely to
 introgress in species with chloroplast captures than in species without
 chloroplast captures. This study illuminates the complex evolution of the
 chloroplast genomes in Salix and the potential for hybridization and
 introgression to influence genomic evolution. 
description: # Data from: Disentangling serial chloroplast captures in willows
 [https://doi.org/10.5061/dryad.r4xgxd2qh](https://doi.org/10.5061/dryad.r4xgxd2qh) ## Description of the data and file structure This dataset contains information for the final sequence alignment file and the initial maximum likelihood tree for 77 chloroplast samples for willows. ### Files and variables #### File: chloroplast\_sequences\_final\_alignment.fasta **Description:** final alignment file for chloroplast sequences #### File: chloroplast\_tree\_initial.iqtree **Description:** maximum likelihood tree for chloroplast sequences ## Access information Other publicly accessible locations of the data: The raw sequences are uploaded to NCBI under bioproject number PRJNA1230114
DOI: 10.5281/zenodo.18392532
title: KaML-CBTree v2.0.0 ensemble weights (CBT2)
DOI: 10.5281/zenodo.17943947
title: KaML-CBTree v2.0.0 ensemble weights (CBT2)
DOI: 10.5061/dryad.8sf7m0d12
title: CD8+ T cell-derived CD40L mediates non-canonical cytotoxicity in CD40-expressing cancer cells

description: T cells and their effector functions, in particular the canonical
 cytotoxicity of CD8+ T cells involving perforin, granzymes, Fas Ligand,
 and TRAIL, are crucial for tumor immunity. Here, we reveal a previously
 unidentified mechanism by which CD40L-expressing CD8+ T cells induce
 cytotoxicity in cancer cells. In murine models, up to 50% of
 tumor-specific CD8+ T cells expressed CD40L, and conditional CD40L
 ablation in CD8+ T cells alone led to tumor formation. Mechanistically,
 CD40L+CD8+ T cells can induce cell death in CD40-expressing cancer cells
 by triggering caspase 8 activation. We demonstrate that a gene signature
 for resistance to CD40 signaling-induced cell death strongly correlates
 with worse survival in different human cancer cohorts. Our results
 introduce CD40L as a rather counter-intuitive, non-canonical cytotoxic
 factor that complements the capabilities of CD8+ T cells to combat cancers
 and has the potential to enhance the efficacy of immunotherapies.
description: # CD8+ T cell-derived CD40L mediates non-canonical cytotoxicity in
 CD40-expressing cancer cells
 [https://doi.org/10.5061/dryad.8sf7m0d12](https://doi.org/10.5061/dryad.8sf7m0d12) ## Description of the data and file structure These files contain the R scripts and the data used for the analysis: **R codes** * Figure 7C: Heatmap_Fig_7c.R * Figure 7D: Survival_Fig_7d.R * Figure 7E: Partial_Cor_TCGA_Fig_7e.R * Figure 7F: Survival_Checkmate_Fig_7f.R * Figure S8: Stage_Cor_TCGA_Fig_S8.R * Figure S9: Partial_Cor_Checkmate_Fig_S9.R **data files** `Expression_22Q1_RCC.csv` - contains the expression data of the renal cell carcinoma (RCC) lines downloaded from the Encyclopaedia of Cancer Cell Lines. In the table each row represents an individual patient, each column a Gene. The values in the table represent gene expression TPM values of the protein coding genes for the cell lines. Values are inferred from RNA-seq data using RSEM (stranded or unstranded mode, depending on each sample's sequencing protocol) and are reported after log2 transformation, using a pseudo-count of 1; log2(TPM+1). `RCC_Info.csv` - include the response data to CD40 signaling in RCC lines. RCC_Info.csv - include the response data to CD40 signaling in RCC lines. The names of the cell lines are listed in the first column under cell lines, in the second column the tumor entity under indication in the third column the response of the cell lines to CD40-mediated cytotoxicity under reaction, with a death rate of less than 5% categorized as resistant (Res) and more than 5% as sensitive (Sens). Untested cell lines were categorized as unknown (Unk). Data from the Checkmate studies were taken from the following manuscript [https://doi.org/10.1038/s41591-020-0839-y](https://doi.org/10.1038/s41591-020-0839-y)
DOI: 10.5061/dryad.612jm64fj
title: Nestling birds learn socially to eavesdrop on heterospecific alarm calls through acoustic association

description: Animals often eavesdrop on signals intended for others to gather
 information about their environment. While adult animals have been shown
 to learn to recognize unfamiliar heterospecific alarm calls through both
 social and asocial learning, it remains unclear whether and how young
 animals learn to recognize unfamiliar alarm calls. We show experimentally
 that nestling Daurian redstarts Phoenicurus auroreus can socially learn to
 recognize unfamiliar heterospecific alarm signals by associating them with
 conspecific alarm calls. We trained nestlings by presenting two unfamiliar
 sounds, one together with conspecific alarm calls (training) and one
 without (control). Before training, nestlings showed similarly little
 response to both novel sounds. After training, however, nestlings showed
 clear anti-predator responses to the training sound, but not to the
 control sound. These results show that nestling birds can socially learn
 to associate novel sounds with known alarm calls, even without visual
 confirmation of danger.  
description: # Nestling birds learn socially to eavesdrop on heterospecific alarm calls
 through acoustic association Dataset DOI:
 [10.5061/dryad.612jm64fj](10.5061/dryad.612jm64fj) ## Description of the
 data and file structure ### Files and variables #### File: Data\_alarm.csv
 ##### Variables nestid = nest identity nesttype = type of nest
 (natural/box) recording = video reocording identity clutchsize = clutch
 size group = warbler or rosefinch group stage = test stage (Pre-training /
 test day 1 / test day 2) treatment = playback treatment (warbler /
 rosefinch) ifhead = whether nestlings lower the head (0 = no; 1 = yes; NA
 = not available, as no usable video was recorded due to reasons such as
 nest predation or severe weather conditions.) ifbeg = whether nestlings
 emit begging call (0 = no; 1 = yes; NA = not available, as no usable video
 was recorded due to reasons such as nest predation or severe weather
 conditions.) ## Code/software We used one R script (Rcode_alarm.R) to
 analyze our data: Rscript: reading data, loading packages and analyzing
 data.