cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.dg4p2y
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis tayrona"
 ]
}

 The dataset includes 188 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010525-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ztsk7
title: Occurrence Download

description: A dataset containing 6986 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Elevation 0.0-1200.0m",
 "OccurrenceStatus is Present",
 "TaxonKey is Cedrela odorata"
 ]
}

 The dataset includes 6986 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010524-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/ta2k-zv61
title: SNP sequencing of Jackass Morwong (Nemadactylus macropterus) samples from the SESSF

description: N. macropterus sample metadata from DNA extractions and SNP Diversity Array sequencing generated during Olivia Wilk's Honours research, samples from Sea-Mes voyages 2023 and 2024.
DOI: 10.15468/dl.egefme
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis thectopternus"
 ]
}

 The dataset includes 578 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010527-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.599czf
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pristimantis surdus"
 ]
}

 The dataset includes 190 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010526-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p4e697
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microcebus sambiranensis Rasoloarison, Goodman & Ganzhorn, 2000"
 ]
}

 The dataset includes 39 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0347977-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah8mbj
title: Occurrence Download

description: A dataset containing 9749 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (April, May, June)",
 "TaxonKey is Ficedula hypoleuca (Pallas, 1764)",
 "Year 1980-2023"
 ]
}

 The dataset includes 9749 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067490-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-12126
title: Put' = Voie = [The way], no. 30 (October 1931)

description: [description english/roman)] Irregular frequency
DOI: 10.15468/dl.932gdc
title: Occurrence Download

description: A dataset containing 867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rhododendron irroratum Franch."
 ]
}

 The dataset includes 867 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009890-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vqm5kw
title: Occurrence Download

description: A dataset containing 14810 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hylaeus brevicornis Nylander, 1852, Hylaeus confusus Nylander, 1852, Hyllus cornutus (Blackwall, 1866), Hylaeus crassanus (Warncke, 1972))",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 14810 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0319839-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-13234
title: Put' = Voie = [The way], no. 41 (November-December 1933)

description: [description english/roman)] Irregular frequency
DOI: 10.15468/dl.v5jbrf
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paullinia nuriensis Steyerm."
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064632-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-12816
title: Put' = Voie = [The way], no. 37 (February 1933)

description: [description english/roman)] Irregular frequency
DOI: 10.15468/dl.ccx5pg
title: Occurrence Download

description: A dataset containing 264 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Helostoma temminckii Cuvier, 1829"
 ]
}

 The dataset includes 264 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0338010-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-11727
title: Put' = Voie = [The way], no. 26 (February 1931)

description: [description english/roman)] Irregular frequency
DOI: 10.15468/dl.5pj2v5
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Physospermum verticillatum (Waldst. & Kit.) Vis."
 ]
}

 The dataset includes 205 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078781-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8c7jgh
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex maritima Gunnerus",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 94 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0407696-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k9u4hy
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Amphibia",
 "TaxonKey is Aves",
 "TaxonKey is Insecta",
 "TaxonKey is Reptilia",
 "TaxonKey is Mammalia",
 "TaxonKey is Chilopoda",
 "TaxonKey is Diplopoda",
 "TaxonKey is Arachnida"
 ]
 },
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "HasCoordinate is true",
 "DecimalLongitude is greater than or equal to 100.000000",
 "DecimalLongitude is less than 105.000000",
 "DecimalLatitude is greater than or equal to 55.000000",
 "DecimalLatitude is less than 60.000000",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2018"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002439-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d628zy
title: Occurrence Download

description: A dataset containing 298725706 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Magnoliopsida"
 ]
}

 The dataset includes 298725706 records from 10206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0078782-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15715993
title: Data and code for "Unprecedented suppression of Panama's Pacific upwelling in 2025", by O'Dea et al.

description: Data and code for "Unprecedented suppression of Panama's Pacific upwelling in 2025"

This repository contains the complete dataset and R code used to document and analyse the unprecedented failure of seasonal upwelling in the Gulf of Panama during 2025, representing the first such event in over 40 years of observational records.

Dataset Description

Temporal Coverage: 1985-2025 (satellite data), 1995-2025 (in situ temperature), 2014-2025 (wind data)

Spatial Coverage: Gulf of Panama, Pacific coast of Central America (approximately 7-9°N, 78-80°W)

Data Contents

Temperature Data



Satellite sea surface temperature (SST): 40-year time series (1985-2025) from NOAA Coral Reef Watch 5km product, extracted from 8.1750°N, 79.3250°W

In situ temperature loggers: 30-year continuous record (1995-2025) from automated loggers deployed at 6m depth near Isla Pacheca (8.660°N, 79.050°W), recorded at 15-minute intervals

Temperature profiles: CTD cast data from March 2024 and 2025 at station GP-07 (7.970°N, 79.300°W) to 60m depth


Atmospheric Data



Local wind measurements: Quality-controlled wind speed and direction data from Punta Culebra meteorological station (8.91072°N, 79.52892°W) covering 2014-2024 and 2025


Derived Variables



Upwelling event identification (days below 25°C threshold)

Wind stress calculations (meridional and zonal components)

Cumulative upwelling metrics

Wind relaxation event analysis

ENSO state classifications and correlations


Code Repository

Complete R scripts (version 4.1.2) to reproduce all analyses and figures, including:



Data processing and quality control procedures

Statistical analyses (GAM fitting, t-tests, correlation analyses)

Upwelling event detection algorithms

Wind stress and relaxation calculations

Figure generation code for all manuscript figures

ENSO analysis workflows


Methodology

Data collection and analysis methods follow established oceanographic conventions for the region, with upwelling events defined as periods when mean daily temperature drops below 25°C. Wind stress calculations use standard formulations with quality-controlled meteorological data. Statistical analyses employ generalized additive models (GAM) and comparative techniques to assess the 2025 anomaly against historical baselines.

Related Publications

This dataset supports the findings published in A. O’Dea,A.J. Sellers,C. Pérez-Medina,J. Pardo Díaz,A. Guzmán Bloise,C. Pöhlker,M.T. Chiliński,H.M. Aardema,J.D. Cybulski,L. Heins,S.R. Paton,H.A. Slagter,R. Schiebel, & G.H. Haug,  Unprecedented suppression of Panama’s Pacific upwelling in 2025, Proc. Natl. Acad. Sci. U.S.A. 122 (36) e2512056122, https://doi.org/10.1073/pnas.2512056122 (2025).

Keywords: upwelling, tropical oceanography, Gulf of Panama, climate change, marine ecology, wind stress, sea surface temperature, ENSO, time series analysis
DOI: 10.15468/dl.2tucex
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tabanus biguttatus, Tabanus ustus, Peringueyomyina barnardi, Peringueyomyina, Tipula, Afrothaumalea pamelae, Afrothaumalea, Conosia, Dolichopeza, Hexatoma, Erioptera, Gonomyia, Limnophila crepuscula, Longurius, Acanthiops cooperi, Acanthiops, Acanthiops delphinae, Acanthiops elgonensis, Acanthiops erepens, Acanthiops faro, Acanthiops griffithsi, Acanthiops io, Acanthiops marlieri, Acanthiops namorona, Acanthiops spinosum, Acanthiops tsitsa, Acanthiops variegatus, Acanthiops varius, Acanthiops zomba, Afroptilum biarcuatum, Afroptilum bicorne, Afroptilum boettgeri, Afroptilum dicentrum, Afroptilum parvum, Afroptilum sudafricanum, Procloeon cylindroculum, Cloeon virgiliae, Baetis aeneus, Baetis glaucus, Baetis lawrencei, Baetis magae, Baetis monikae, Baetis permultus, Baetis pseudogemellus, Baetis spatulatus, Baetis tripunctatus, Barnumus editus, Barnumus, Bugilliesia grisea, Bugilliesia, Bugilliesia margaretae, Bugilliesia nitida, Bugilliesia notabilis, Bugilliesia sudanensis, Cheleocloeon carinatum, Cheleocloeon, Cheleocloeon dimorphicum, Cheleocloeon excisum, Cheleocloeon falcatum, Cheleocloeon littorale, Cheleocloeon yolandae, Cloeodes dentatus, Cloeodes inzingae, Cloeon aeneum, Cloeon agnewi, Cloeon amaniensis, Cloeon areolatum, Cloeon bellum, Cloeon cambouei, Cloeon chaplini, Cloeon gambiae, Cloeon madhouae, Cloeon perkinsi, Cloeon scitulum)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024237-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rww8jc
title: Occurrence Download

description: A dataset containing 454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Maerua triphylla",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 454 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024238-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15715940
title: Data and code for "Unprecedented suppression of Panama's Pacific upwelling in 2025", by O'Dea et al.

description: Data and code for "Unprecedented suppression of Panama's Pacific upwelling in 2025"

This repository contains the complete dataset and R code used to document and analyse the unprecedented failure of seasonal upwelling in the Gulf of Panama during 2025, representing the first such event in over 40 years of observational records.

Dataset Description

Temporal Coverage: 1985-2025 (satellite data), 1995-2025 (in situ temperature), 2014-2025 (wind data)

Spatial Coverage: Gulf of Panama, Pacific coast of Central America (approximately 7-9°N, 78-80°W)

Data Contents

Temperature Data



Satellite sea surface temperature (SST): 40-year time series (1985-2025) from NOAA Coral Reef Watch 5km product, extracted from 8.1750°N, 79.3250°W

In situ temperature loggers: 30-year continuous record (1995-2025) from automated loggers deployed at 6m depth near Isla Pacheca (8.660°N, 79.050°W), recorded at 15-minute intervals

Temperature profiles: CTD cast data from March 2024 and 2025 at station GP-07 (7.970°N, 79.300°W) to 60m depth


Atmospheric Data



Local wind measurements: Quality-controlled wind speed and direction data from Punta Culebra meteorological station (8.91072°N, 79.52892°W) covering 2014-2024 and 2025


Derived Variables



Upwelling event identification (days below 25°C threshold)

Wind stress calculations (meridional and zonal components)

Cumulative upwelling metrics

Wind relaxation event analysis

ENSO state classifications and correlations


Code Repository

Complete R scripts (version 4.1.2) to reproduce all analyses and figures, including:



Data processing and quality control procedures

Statistical analyses (GAM fitting, t-tests, correlation analyses)

Upwelling event detection algorithms

Wind stress and relaxation calculations

Figure generation code for all manuscript figures

ENSO analysis workflows


Methodology

Data collection and analysis methods follow established oceanographic conventions for the region, with upwelling events defined as periods when mean daily temperature drops below 25°C. Wind stress calculations use standard formulations with quality-controlled meteorological data. Statistical analyses employ generalized additive models (GAM) and comparative techniques to assess the 2025 anomaly against historical baselines.

Related Publications

This dataset supports the findings published in A. O’Dea,A.J. Sellers,C. Pérez-Medina,J. Pardo Díaz,A. Guzmán Bloise,C. Pöhlker,M.T. Chiliński,H.M. Aardema,J.D. Cybulski,L. Heins,S.R. Paton,H.A. Slagter,R. Schiebel, & G.H. Haug,  Unprecedented suppression of Panama’s Pacific upwelling in 2025, Proc. Natl. Acad. Sci. U.S.A. 122 (36) e2512056122, https://doi.org/10.1073/pnas.2512056122 (2025).

Keywords: upwelling, tropical oceanography, Gulf of Panama, climate change, marine ecology, wind stress, sea surface temperature, ENSO, time series analysis
DOI: 10.15493/dea.mims.25112022
title: Processed CTD continuous observations from the West Coast Hake Biomass Survey on the Africana Voyage 015, January 1984

description: Africana Voyage 015
description: This is processed downcast CTD continuous data from the West Coast Hake Biomass Survey on the Africana Voyage 015 from 05 - 31 January 1984. The cruise operated in the Benguela Current Large Marine Ecosystem (BCLME) region on the west coast of South Africa. The purpose of this cruise was to survey by means of trawling the abundance of recruiting and adult hake between the Orange River and longitude 20° E. The objectives also included investigating the diurnal cycle of hake and other demersal species, to compare the trawling results of R.S. Africana with those of M.F.V. Chicha Touza, the Spanish trawler used for similar surveys, to investigate the environment of hake and other demersal species and to carry out acoustic target identification of mesopelagic species using RMT 8 nets.
description: Neil Brown MK3 and MK4 Conductivity-Temperature-Depth (CTD) instruments were used to measure pressure, temperature and conductivity through the water column during research and monitoring cruises between 1983 and 2000. Temperature was converted from the IPTS-68 scale to the ITS-90 scale, and salinity was computed from conductivity measurements on the 1978 Practical Salinity Scale, according to UNESCO (1991) algorithms. UNESCO (1993) quality control procedures were applied to the data, and obvious erroneous values resulting from problems including electronic spikes, data collection in air, inadequate flow through the conductivity cell, among others, have been removed. Any additional calibrations or corrections have been specified in each data file, where applicable and available.
DOI: 10.15493/dea.mims.27112022
title: Raw CTD continuous observations from the West Coast Hake Biomass Survey on the Africana Voyage 015, January 1984

description: Africana Voyage 015
description: This is raw CTD continuous data from the West Coast Hake Biomass Survey on the Africana Voyage 015 from 05 - 31 January 1984. The cruise operated in the Benguela Current Large Marine Ecosystem (BCLME) region on the west coast of South Africa. The purpose of this cruise was to survey by means of trawling the abundance of recruiting and adult hake between the Orange River and longitude 20° E. The objectives also included investigating the diurnal cycle of hake and other demersal species, to compare the trawling results of R.S. Africana with those of M.F.V. Chicha Touza, the Spanish trawler used for similar surveys, to investigate the environment of hake and other demersal species and to carry out acoustic target identification of mesopelagic species using RMT 8 nets. 
description: Neil Brown MK3 and MK4 Conductivity-Temperature-Depth (CTD) instruments were used to measure pressure, temperature and conductivity through the water column during research and monitoring cruises between 1983 and 2000. Here we present raw CTD profile data.
DOI: 10.15493/dea.mims.26112022
title: Processed CTD discrete observations from the West Coast Hake Biomass Survey on the Africana Voyage 015, January 1984

description: Africana Voyage 015
description: This is processed CTD discrete data from the upcast collected during the West Coast Hake Biomass Survey on the Africana Voyage 015 from 05 - 31 January 1984. The cruise operated in the Benguela Current Large Marine Ecosystem (BCLME) region on the west coast of South Africa. The purpose of this cruise was to survey by means of trawling the abundance of recruiting and adult hake between the Orange River and longitude 20° E. The objectives also included investigating the diurnal cycle of hake and other demersal species, to compare the trawling results of R.S. Africana with those of M.F.V. Chicha Touza, the Spanish trawler used for similar surveys, to investigate the environment of hake and other demersal species and to carry out acoustic target identification of mesopelagic species using RMT 8 nets.
description: Neil Brown MK3 and MK4 Conductivity-Temperature-Depth (CTD) instruments were used to measure pressure, temperature and conductivity through the water column during research and monitoring cruises between 1983 and 2000. Temperature was converted from the IPTS-68 scale to the ITS-90 scale, and salinity was computed from conductivity measurements on the 1978 Practical Salinity Scale, according to UNESCO (1991) algorithms. UNESCO (1993) quality control procedures were applied to the data, and obvious erroneous values resulting from problems including electronic spikes, data collection in air, inadequate flow through the conductivity cell, among others, have been removed. Any additional calibrations or corrections have been specified in each data file, where applicable and available.
DOI: 10.15468/dl.7hq2t9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Neosilurus equinus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024241-250827131500795/datasets/export for details.