cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19435238
title: Ultrastructure and phylogeny of <i>Parietochloris toyamaensis</i> sp. nov. and <i>P. bilobata</i> (Trebouxiophyceae)

description: We describe <i>Parietochloris toyamaensis</i> sp. nov. and verify the taxonomic status of <i>P. bilobata</i> (originally described as <i>Neochloris</i> and once combined with <i>Ettlia</i>), using ultrastructural and molecular analyses. <i>P. toyamaensis</i> was isolated from soil collected in Toyama, Japan. It had a parietal chloroplast with pyrenoids that were discontinuously covered with starch segments and penetrated more or less in parallel by thylakoid membranes, and reproduced by forming naked, somewhat dorsoventral, biflagellate zoospores. Two contractile vacuoles were in line lengthwise, located in the median ventral side of the zoospores, as in the type <i>P. alveolaris</i>. The basal apparatus components included a single microtubule in the dexter root. <i>P. toyamaensis</i> was separately resolved from other members of the genus in the 18S rDNA and ITS2 trees. Since the authentic strain ASIB V141 of <i>P. bilobata</i> (stored as <i>Ettlia</i>) has been lost, ASIB V143 was used as a reference in place of it. <i>P. bilobata</i> ASIB V143 was resolved in the ‘<i>Parietochloris</i> sensu stricto’ clade but not ‘<i>Lobosphaera</i>’ clade in the 18S rDNA tree, so taxonomically the combination of <i>N. bilobata</i> with <i>Parietochloris</i> as <i>P. bilobata</i> by Andreyeva was confirmed. In zoospores of the strains of <i>P. bilobata</i>, contractile vacuoles were located in the ventral side, as in <i>P. alveolaris</i>. The taxonomic relationship between <i>P. bilobata</i> and <i>P. grandis</i>, and evaluation of the unique position of contractile vacuoles in dorsoventral zoospores as one of the key characters of <i>Parietochloris</i> were discussed. Characterization of the species of <i>Parietochloris</i> by using ultrastructural and molecular data.Proposal of <i>Parietochloris toyamaensis</i> sp. nov.Verification of phylogenetic position of <i>Parietochloris bilobata.</i> Characterization of the species of <i>Parietochloris</i> by using ultrastructural and molecular data. Proposal of <i>Parietochloris toyamaensis</i> sp. nov. Verification of phylogenetic position of <i>Parietochloris bilobata.</i>
DOI: 10.6084/m9.figshare.19435238.v1
title: Ultrastructure and phylogeny of <i>Parietochloris toyamaensis</i> sp. nov. and <i>P. bilobata</i> (Trebouxiophyceae)

description: We describe <i>Parietochloris toyamaensis</i> sp. nov. and verify the taxonomic status of <i>P. bilobata</i> (originally described as <i>Neochloris</i> and once combined with <i>Ettlia</i>), using ultrastructural and molecular analyses. <i>P. toyamaensis</i> was isolated from soil collected in Toyama, Japan. It had a parietal chloroplast with pyrenoids that were discontinuously covered with starch segments and penetrated more or less in parallel by thylakoid membranes, and reproduced by forming naked, somewhat dorsoventral, biflagellate zoospores. Two contractile vacuoles were in line lengthwise, located in the median ventral side of the zoospores, as in the type <i>P. alveolaris</i>. The basal apparatus components included a single microtubule in the dexter root. <i>P. toyamaensis</i> was separately resolved from other members of the genus in the 18S rDNA and ITS2 trees. Since the authentic strain ASIB V141 of <i>P. bilobata</i> (stored as <i>Ettlia</i>) has been lost, ASIB V143 was used as a reference in place of it. <i>P. bilobata</i> ASIB V143 was resolved in the ‘<i>Parietochloris</i> sensu stricto’ clade but not ‘<i>Lobosphaera</i>’ clade in the 18S rDNA tree, so taxonomically the combination of <i>N. bilobata</i> with <i>Parietochloris</i> as <i>P. bilobata</i> by Andreyeva was confirmed. In zoospores of the strains of <i>P. bilobata</i>, contractile vacuoles were located in the ventral side, as in <i>P. alveolaris</i>. The taxonomic relationship between <i>P. bilobata</i> and <i>P. grandis</i>, and evaluation of the unique position of contractile vacuoles in dorsoventral zoospores as one of the key characters of <i>Parietochloris</i> were discussed. Characterization of the species of <i>Parietochloris</i> by using ultrastructural and molecular data.Proposal of <i>Parietochloris toyamaensis</i> sp. nov.Verification of phylogenetic position of <i>Parietochloris bilobata.</i> Characterization of the species of <i>Parietochloris</i> by using ultrastructural and molecular data. Proposal of <i>Parietochloris toyamaensis</i> sp. nov. Verification of phylogenetic position of <i>Parietochloris bilobata.</i>
DOI: 10.6084/m9.figshare.21332596
title: Association of TLR2 and TLR9 gene polymorphisms with atopic dermatitis: a systematic review and meta-analysis with trial sequential analysis

description: Atopic dermatitis (AD) is a chronic, inflammatory skin disease. The mechanism was complex. Genetic mutations of Toll-like receptor (TLR) may be associated with AD, yet still unclear. We aim to provide specific evidence of the association of TLR2, TLR9 gene polymorphisms with AD. Publications were selected according to the criteria. Newcastle-Ottawa Scale was applied to evaluate the quality. The value of ORs and 95%CIs were applied to measure the associations. According to the heterogeneity, the effects model of fixed or random was selected in data combination. For TLR2 gene rs5743708 polymorphism, under allele and recessive contrasts, the pooled data showed a significant correlation, which was A vs a, OR = 0.51 (95%CI: 0.30, 0.86); AA vs Aa + aa, OR = 0.54 (95%CI: 0.33, 0.88). For TLR2 gene rs4696480 polymorphism, under allele, homozygous, heterozygous, and dominant contrasts, the pooled data showed a significant correlation, which was A vs a, OR = 0.79 (95%CI: 0.64, 0.97), AA vs aa, OR = 0.65 (95%CI: 0.43, 0.97), Aa vs aa, OR = 0.68 (95%CI: 0.48, 0.97), AA + Aa vs aa, OR = 0.67 (95%CI: 0.49, 0.93). There are significant associations of TLR2 gene rs5743708, rs4696480 polymorphisms with atopic dermatitis, while no associations are found in TLR9 gene rs5743836, rs187084 polymorphisms.
DOI: 10.6084/m9.figshare.21332596.v1
title: Association of TLR2 and TLR9 gene polymorphisms with atopic dermatitis: a systematic review and meta-analysis with trial sequential analysis

description: Atopic dermatitis (AD) is a chronic, inflammatory skin disease. The mechanism was complex. Genetic mutations of Toll-like receptor (TLR) may be associated with AD, yet still unclear. We aim to provide specific evidence of the association of TLR2, TLR9 gene polymorphisms with AD. Publications were selected according to the criteria. Newcastle-Ottawa Scale was applied to evaluate the quality. The value of ORs and 95%CIs were applied to measure the associations. According to the heterogeneity, the effects model of fixed or random was selected in data combination. For TLR2 gene rs5743708 polymorphism, under allele and recessive contrasts, the pooled data showed a significant correlation, which was A vs a, OR = 0.51 (95%CI: 0.30, 0.86); AA vs Aa + aa, OR = 0.54 (95%CI: 0.33, 0.88). For TLR2 gene rs4696480 polymorphism, under allele, homozygous, heterozygous, and dominant contrasts, the pooled data showed a significant correlation, which was A vs a, OR = 0.79 (95%CI: 0.64, 0.97), AA vs aa, OR = 0.65 (95%CI: 0.43, 0.97), Aa vs aa, OR = 0.68 (95%CI: 0.48, 0.97), AA + Aa vs aa, OR = 0.67 (95%CI: 0.49, 0.93). There are significant associations of TLR2 gene rs5743708, rs4696480 polymorphisms with atopic dermatitis, while no associations are found in TLR9 gene rs5743836, rs187084 polymorphisms.
DOI: 10.6084/m9.figshare.20729611.v2
title: Data for "Shifts, trends, and drivers of lake color across China since the 1980s"

description: We generated the four-decade variations in lake color for 2550 China lakes from Landsat images. We analyzed the relations between NDVI, meteorology, and lake color. All raw dataset was organized in CSV format. The relevant scripts in Python are provided as well.
DOI: 10.5281/zenodo.7623702
title: N3000_DLRM_TERABYTE

description: For MLCommons V3.0 submission
DOI: 10.5281/zenodo.7623701
title: N3000_DLRM_TERABYTE

description: For MLCommons V3.0 submission
DOI: 10.57703/ce-rs7jq
title: Contact Mechanics Challenge - Periodic version

description: Topography used in the contact mechanics challenge : http://www.lmp.uni-saarland.de/index.php/research-topics/contact-mechanics-challenge-announcement/
DOI: 10.3886/e131081v1-132400
title: The Effect of Graphics on Reading Comprehension

description: Coding sheet
DOI: 10.6084/m9.figshare.19719310.v2
title: Seed-mediated AuNR Synthesis Extraction with GPT-3

description: The files were used as follows: <br> Training sets for fine-tuning GPT-3 to extract structured seed-mediated AuNR growth procedures from unstructured text: aunr_synth_v6_ucfx_static_0_240_0_corrected_publishable.json Predictions and corrected predictions for evaluating the performance of GPT-3 recipe extraction completions: aunr_synth_v6_ucfx_static_0_40_6_predict_publishable.json aunr_synth_v6_ucfx_static_0_40_6_corrected_publishable.json GPT-3 recipe extraction completion prediction over the complete dataset: aunr_synth_v6_ucfx_static_0_1137_0_predict_publishable.json GPT-3 recipe extraction completion prediction over the complete dataset merged by paper with empty fields removed: aunr_synth_v6_ucfx_static_dynamic_0_1137_0_predict_paperwise_merged_publishable.json <br>
DOI: 10.6084/m9.figshare.14420817.v2
title: Porosity and fragmentation of the block in the city core: a Nolli’s innovation perspective

description: Urban centrality demands building space that erodes and implodes blocks in the most accessible places. Nolli’s map made in 1748 was the first known graphic reference that visualised the phenomenon. The map and its contemporary interpretation are the starting point for this paper. The research has graphic support from existing maps that used Nolli’s idea to represent those cities, and other maps created <i>ad hoc</i>. It is argued how territories are divided into small units that fold and wrinkle, drawing the conclusion that they do it to (i) find the maximum useful surface area in the minimum amount of space; (ii) concentrate activity; (iii) enable interaction; (iv) optimise resources; (v) accelerate processes; and (vi) cure urban diseases. Methodologically, this is done in two large sections, one showing erosion, division and fragmentation of the central urban layouts, and another emphasising the importance of architecture extending urban layouts to other directions.
DOI: 10.6084/m9.figshare.14484512
title: NDS: an interactive, web-based system to visualize urban neighborhood dynamics in United States

description: NDS is an interactive, web-based system, for the visualization of multidimensional neighborhood dynamics across the 50 largest US Metropolitan Statistical Areas (MSAs) from 1980 to 2010 (http://neighborhooddynamics.dreamhosters.com). Four different visualization tools are developed: (1) an interactive time slider to show neighborhood classification changes for different years; (2) multiple interactive bar charts for each variables of each neighborhood; (3) an animated neighborhood’s trajectory and sequence cluster on a self-organizing map (SOM) output space; and (4) a synchronized visualization tool showing maps for four time stamps at once. The development of this interactive online platform for visualizing dynamics overcomes many of the challenges associated with communicating changes for multiple variables, across multiple time stamps, and for a large geographic area when relying upon static maps. The system enables users to select and dive into details on particular neighborhoods and explore their changes over time.
DOI: 10.6084/m9.figshare.14484512.v1
title: NDS: an interactive, web-based system to visualize urban neighborhood dynamics in United States

description: NDS is an interactive, web-based system, for the visualization of multidimensional neighborhood dynamics across the 50 largest US Metropolitan Statistical Areas (MSAs) from 1980 to 2010 (http://neighborhooddynamics.dreamhosters.com). Four different visualization tools are developed: (1) an interactive time slider to show neighborhood classification changes for different years; (2) multiple interactive bar charts for each variables of each neighborhood; (3) an animated neighborhood’s trajectory and sequence cluster on a self-organizing map (SOM) output space; and (4) a synchronized visualization tool showing maps for four time stamps at once. The development of this interactive online platform for visualizing dynamics overcomes many of the challenges associated with communicating changes for multiple variables, across multiple time stamps, and for a large geographic area when relying upon static maps. The system enables users to select and dive into details on particular neighborhoods and explore their changes over time.
DOI: 10.6084/m9.figshare.14770712
title: Mapping disruptive long-term scenarios using a participatory approach

description: Although mapping long-term scenarios can be considered crucial in decision-making, its inclusion in planning processes remains a challenge. This paper aims to gain insights into this by showing a participatory mapping method that creates a dialogue and interaction space between stakeholders and experts. The research was based on three 2050 visions, taking as a case study the eastern sector of the metropolitan area of Madrid, Spain. The method consisted of conducting a participatory mapping workshop involving urban planners, transport engineers, environmental consultants, and property developers. Those experts mapped transformations in urban land use for each 2050 scenario. The results evidenced differences between the three 2050 scenarios, highlighting the usefulness of the participatory mapping workshop to represent the amount and nature of growth in urban land use and organisation of the transport network.
DOI: 10.6084/m9.figshare.14770712.v1
title: Mapping disruptive long-term scenarios using a participatory approach

description: Although mapping long-term scenarios can be considered crucial in decision-making, its inclusion in planning processes remains a challenge. This paper aims to gain insights into this by showing a participatory mapping method that creates a dialogue and interaction space between stakeholders and experts. The research was based on three 2050 visions, taking as a case study the eastern sector of the metropolitan area of Madrid, Spain. The method consisted of conducting a participatory mapping workshop involving urban planners, transport engineers, environmental consultants, and property developers. Those experts mapped transformations in urban land use for each 2050 scenario. The results evidenced differences between the three 2050 scenarios, highlighting the usefulness of the participatory mapping workshop to represent the amount and nature of growth in urban land use and organisation of the transport network.
DOI: 10.6084/m9.figshare.13672392
title: Beyond land use mix, walkable trips. An approach based on parcel-level land use data and network analysis

description: Land use mix is one of the cornerstones for urban sustainability, in opposition to functional segregation and zoning policies. Land use mix is a prerequisite for urban proximity dynamics, healthier lifestyles and public space vitality. However, methodological shortcomings to its measurement remain and are responsible for the unexpected weak association with pedestrian activity. This study puts forward a novel method to reframe, measure and map land use mix as ‘walkable trips’, a closer approach to its benefits based on functional and spatial complementarity. The method draws on newly available cadastral microdata at the parcel-level that, combined with trip generation rates and network analysis tools, enable a detailed assessment and mapping of potential for walkable trips, as well as a proxy to the spatial patterns of urban vitality, in line with the principle of the 15-minute city. The method is applied to the case of the Madrid metropolitan area.
DOI: 10.6084/m9.figshare.12971032
title: Who are the voters and where are they? Using spatial statistics to analyse voting patterns in the parliamentary elections of the Czech Republic

description: The mapping of election results has long been a popular topic among cartographers, journalists, data scientists and infographic authors. However, their work usually concludes with simple visualizations of a single election, and in most cases only the winning party is represented. Can we tell the story of a political party over two decades via maps? What were the reasons for the rise and fall of such party; in our case the Czech Social Democrats? Moreover, how were the changes in voting patterns spatially distributed and manifested? With our paper, we explore voting patterns as well as the voting history of specific parties related to the fate of Social Democrats in the Czech Republic in several national elections from 2006 to 2017. We would like to invite other political scientists to explore the election results in their countries, not just over time, but also in space, and ideally via maps.
DOI: 10.6084/m9.figshare.12971032.v2
title: Who are the voters and where are they? Using spatial statistics to analyse voting patterns in the parliamentary elections of the Czech Republic

description: The mapping of election results has long been a popular topic among cartographers, journalists, data scientists and infographic authors. However, their work usually concludes with simple visualizations of a single election, and in most cases only the winning party is represented. Can we tell the story of a political party over two decades via maps? What were the reasons for the rise and fall of such party; in our case the Czech Social Democrats? Moreover, how were the changes in voting patterns spatially distributed and manifested? With our paper, we explore voting patterns as well as the voting history of specific parties related to the fate of Social Democrats in the Czech Republic in several national elections from 2006 to 2017. We would like to invite other political scientists to explore the election results in their countries, not just over time, but also in space, and ideally via maps.
DOI: 10.6084/m9.figshare.13672392.v1
title: Beyond land use mix, walkable trips. An approach based on parcel-level land use data and network analysis

description: Land use mix is one of the cornerstones for urban sustainability, in opposition to functional segregation and zoning policies. Land use mix is a prerequisite for urban proximity dynamics, healthier lifestyles and public space vitality. However, methodological shortcomings to its measurement remain and are responsible for the unexpected weak association with pedestrian activity. This study puts forward a novel method to reframe, measure and map land use mix as ‘walkable trips’, a closer approach to its benefits based on functional and spatial complementarity. The method draws on newly available cadastral microdata at the parcel-level that, combined with trip generation rates and network analysis tools, enable a detailed assessment and mapping of potential for walkable trips, as well as a proxy to the spatial patterns of urban vitality, in line with the principle of the 15-minute city. The method is applied to the case of the Madrid metropolitan area.
DOI: 10.6084/m9.figshare.14748110
title: The amazing travels of a great naturalist to Sarawak (Malaysia): Odoardo Beccari’s wanderings in Borneo, 1865–1868

description: Odoardo Beccari (1843–1920) is considered to be one of the more important Italian naturalists of the nineteenth century, in particular for his pioneering explorations of the Malaysian Archipelago. During this period, he collected many thousands of botanical, zoological and ethno-anthropological specimens which are now conserved in natural history museums. Based on this conserved material, hundreds of species new to science have been described. In this study, we accurately reconstruct the travel itineraries of Beccari’s first trip to Borneo (Sarawak, 1865–1868). We link modern locations to the names he used, which were Italian transliteration of the local names of the time. We place these locations in time sequence on up-to-date georeferenced topographic maps. We expect our study to be useful to botanists, zoologists, anthropologists, curators of natural history museums and to nature conservators, as it provides precious information on the fauna and flora of Sarawak in the 1860s.
DOI: 10.6084/m9.figshare.14793890
title: Mapping cross-scale economic impacts of storm surge events: considerations for design and user testing

description: Cartographic display of cross-scale phenomena and user-centered design are considered through a discussion of the development of an interactive web map depicting local-to-national economic impacts of hurricane storm surge events in Galveston Bay, Texas. Map development and design (as informed by stakeholder focus groups) is described, including approaches to presenting complex, cross-scale impacts of surge events across multiple years and scenarios. Particular consideration is given to how designs may communicate complexity without overly taxing users’ mental and perceptual resources (measured via NASA task-load index) or outstripping their mapping/domain expertise. The map produced uses linked map views to communicate multiple, cross-scale storm surge impacts. The production process and associated user testing highlighted the importance of matching tool complexity to users’ needs and levels of expertise, including through the use of tiered interface design. Optimizing the design of such maps to meet users’ needs is essential to fostering public hazard literacy.
DOI: 10.6084/m9.figshare.14793890.v2
title: Mapping cross-scale economic impacts of storm surge events: considerations for design and user testing

description: Cartographic display of cross-scale phenomena and user-centered design are considered through a discussion of the development of an interactive web map depicting local-to-national economic impacts of hurricane storm surge events in Galveston Bay, Texas. Map development and design (as informed by stakeholder focus groups) is described, including approaches to presenting complex, cross-scale impacts of surge events across multiple years and scenarios. Particular consideration is given to how designs may communicate complexity without overly taxing users’ mental and perceptual resources (measured via NASA task-load index) or outstripping their mapping/domain expertise. The map produced uses linked map views to communicate multiple, cross-scale storm surge impacts. The production process and associated user testing highlighted the importance of matching tool complexity to users’ needs and levels of expertise, including through the use of tiered interface design. Optimizing the design of such maps to meet users’ needs is essential to fostering public hazard literacy.
DOI: 10.26182/rabg-a014
title: Supplementary data: The evolution of island geographies and the emergence and persistence of Indigenous maritime cultures
DOI: 10.5519/qd.fhoc3hpd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (196 records)