cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9745520.v1
title: Additional file 10: of Stable distinct core eukaryotic viromes in different mosquito species from Guadeloupe, using single mosquito viral metagenomics

description: qRT-PCR primers, probes and conditions. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.9745508.v1
title: MOESM2 of Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

description: Additional file 2: TableÂ S1. List of identified proteins/peptides from different peptide fractionation methods.
DOI: 10.6084/m9.figshare.9745514.v1
title: MOESM3 of Potential early clinical stage colorectal cancer diagnosis using a proteomics blood test panel

description: Additional file 3: TableÂ S2. Plasma protein concentration, subcellular location and tissue specificity.
DOI: 10.6084/m9.figshare.9745475
title: Additional file 5: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S5. DEGs between female and male embryos on Day 8, 10, and 12, respectively. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.9745475.v1
title: Additional file 5: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S5. DEGs between female and male embryos on Day 8, 10, and 12, respectively. (XLSX 68 kb)
DOI: 10.6084/m9.figshare.9745469
title: Additional file 4: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S4. Comparison of DEGs in the elongating embryos between pigs and sheeps. (XLSX 133 kb)
DOI: 10.6084/m9.figshare.9745469.v1
title: Additional file 4: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S4. Comparison of DEGs in the elongating embryos between pigs and sheeps. (XLSX 133 kb)
DOI: 10.6084/m9.figshare.9745460
title: Additional file 3: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S3. DEGs involved in signaling pathways of maternal recognition of pregnancy. (XLSX 431 kb)
DOI: 10.6084/m9.figshare.9745451
title: Additional file 2: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S2. Functional category analyses for genes differentially expressed in each cluster. (XLSX 665 kb)
DOI: 10.6084/m9.figshare.9745460.v1
title: Additional file 3: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S3. DEGs involved in signaling pathways of maternal recognition of pregnancy. (XLSX 431 kb)
DOI: 10.6084/m9.figshare.9745451.v1
title: Additional file 2: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S2. Functional category analyses for genes differentially expressed in each cluster. (XLSX 665 kb)
DOI: 10.6084/m9.figshare.9745445
title: Additional file 1: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S1. DEGs across the stages from porcine embryos on Day 8, 10, and 12, respectively. (XLSX 2707 kb)
DOI: 10.6084/m9.figshare.9745445.v1
title: Additional file 1: of Differential transcriptome dynamics during the onset of conceptus elongation and between female and male porcine embryos

description: Table S1. DEGs across the stages from porcine embryos on Day 8, 10, and 12, respectively. (XLSX 2707 kb)
DOI: 10.6084/m9.figshare.9745424
title: Additional file 2: of Determination of growth-coupling strategies and their underlying principles

description: GCS values for the identified GC strategies of all metabolites of the central carbon metabolism under aerobic conditions. GC strategies with different numbers of maximally allowable reaction deletions were computed using gcOpt with the E. coli iAF1260 core model. GCS values are additionally provided for an unconstrained ATP/ADP and NADH/NAD conversion, an unhindered proton translocation reaction, as well as combinations of these relaxations. The dataset includes the respective reaction and gene deletions for each identified strategy. (XLS 107 kb)
DOI: 10.6084/m9.figshare.9745418
title: Additional file 1: of Determination of growth-coupling strategies and their underlying principles

description: GCS values for the identified GC strategies of all metabolites of the central carbon metabolism under anaerobic conditions. GC strategies with different numbers of maximally allowable reaction deletions were computed using gcOpt with the E. coli iAF1260 core model. GCS values are additionally provided for an unconstrained ATP/ADP and NADH/NAD conversion, an unhindered proton translocation reaction, as well as combinations of these relaxations. The dataset includes the respective reaction and gene deletions for each identified strategy. (XLS 87 kb)
DOI: 10.6084/m9.figshare.9745424.v1
title: Additional file 2: of Determination of growth-coupling strategies and their underlying principles

description: GCS values for the identified GC strategies of all metabolites of the central carbon metabolism under aerobic conditions. GC strategies with different numbers of maximally allowable reaction deletions were computed using gcOpt with the E. coli iAF1260 core model. GCS values are additionally provided for an unconstrained ATP/ADP and NADH/NAD conversion, an unhindered proton translocation reaction, as well as combinations of these relaxations. The dataset includes the respective reaction and gene deletions for each identified strategy. (XLS 107 kb)
DOI: 10.6084/m9.figshare.9745418.v1
title: Additional file 1: of Determination of growth-coupling strategies and their underlying principles

description: GCS values for the identified GC strategies of all metabolites of the central carbon metabolism under anaerobic conditions. GC strategies with different numbers of maximally allowable reaction deletions were computed using gcOpt with the E. coli iAF1260 core model. GCS values are additionally provided for an unconstrained ATP/ADP and NADH/NAD conversion, an unhindered proton translocation reaction, as well as combinations of these relaxations. The dataset includes the respective reaction and gene deletions for each identified strategy. (XLS 87 kb)
DOI: 10.6084/m9.figshare.9745235
title: Earthquake catalog of Deep low-frequency earthquake beneath the Hakone volcano, central Japan

description: This is a earthquake catalog of Deep low-frequency earthquakes (DLFEs) occurred beneath the Hakone volcano, central Japan, in the period from 2000 to 2016. This catalog was obtained by using the Matched Filter method. Source parameters of each DLFE are listed in order of origin time (year month day hour minute sec, JST = UT + 8h), hypocenter location (latitude longitude depth), magnitude.
DOI: 10.6084/m9.figshare.9745337.v1
title: Data.zip

description: We investigate income- and region-specific differences in consumption and air pollution deaths by integrating four models to quantify premature deaths due to PM<sub>2.5</sub> pollution related to household consumption in China, and partition the health impacts by emission types (direct emissions through fuel use and indirect emissions embodied in consumption of goods and services) and by income groups (5 rural and 7 urban).
DOI: 10.6084/m9.figshare.9745235.v2
title: Earthquake catalog of Deep low-frequency earthquake beneath the Hakone volcano, central Japan

description: This is a earthquake catalog of Deep low-frequency earthquakes (DLFEs) occurred beneath the Hakone volcano, central Japan, in the period from 2000 to 2016. This catalog was obtained by using the Matched Filter method. Source parameters of each DLFE are listed in order of origin time (year month day hour minute sec, JST = UT + 8h), hypocenter location (latitude longitude depth), magnitude.
DOI: 10.6084/m9.figshare.9745235.v1
title: DLFE_catalog.dat

description: This is a earthquake catalog of Deep low-frequency earthquakes (DLFEs) occurred beneath the Hakone volcano, central Japan, in the period from 2000 to 2016. This catalog was obtained by using the Matched Filter method. Source parameters of each DLFE are listed in order of origin time (year month day hour minute sec, JST = UT + 8h), hypocenter location (latitude longitude depth), magnitude.
DOI: 10.6084/m9.figshare.9745337.v2
title: Data.zip

description: We investigate income- and region-specific differences in consumption and air pollution deaths by integrating four models to quantify premature deaths due to PM<sub>2.5</sub> pollution related to household consumption in China, and partition the health impacts by emission types (direct emissions through fuel use and indirect emissions embodied in consumption of goods and services) and by income groups (5 rural and 7 urban).
DOI: 10.6084/m9.figshare.9745133
title: Estimating metapopulation abundance to inform conservation of a threatened amphibian

description: R code, JAGs model code, and data used to quantify the effects of pond hydroperiod and local population density on metapopulation dynamics using an integrated spatially-explicit metapopulation abundance model.
DOI: 10.17608/k6.auckland.9745130
title: Data from: Dissolved and particulate carbon and nitrogen fluxes along a Phytophthora agathidicida infection gradient in a kauri (Agathis australis) dominated forest

description: The dataset contains the data underlying the findings presented in the article "Dissolved and particulate carbon and nitrogen fluxes along a <i>Phytophthora agathidicida </i>infection gradient in a kauri (<i>Agathis australis</i>) dominated forest" published in Fungal Ecology (https://doi.org/10.1016/j.funeco.2019.08.005).
DOI: 10.6084/m9.figshare.9745133.v1
title: Estimating metapopulation abundance to inform conservation of a threatened amphibian

description: R code, JAGs model code, and data used to quantify the effects of pond hydroperiod and local population density on metapopulation dynamics using an integrated spatially-explicit metapopulation abundance model.
DOI: 10.17608/k6.auckland.9745130.v1
title: Data from: Dissolved and particulate carbon and nitrogen fluxes along a Phytophthora agathidicida infection gradient in a kauri (Agathis australis) dominated forest

description: The dataset contains the data underlying the findings presented in the article "Dissolved and particulate carbon and nitrogen fluxes along a <i>Phytophthora agathidicida </i>infection gradient in a kauri (<i>Agathis australis</i>) dominated forest" published in Fungal Ecology (https://doi.org/10.1016/j.funeco.2019.08.005).
DOI: 10.6084/m9.figshare.9745118
title: CassavaMap

description: CassavaMap provides disaggregated representation of cassava production and harvested area in 32 countries of sub-Saharan Africa. CassavaMap version 1.0 constitutes two raster files representing disaggregated cassava production (CassavaMap_Prod_v1.tif) and harvested area (CassavaMap_HarvArea_v1.tif). CassavaMap_Prod.csv and CassavaMap_HarvArea.csv are datatables containing outline of detailed production and harvested area statistics respectively. CassavaMap_Legend.csv describes the column headers in the CassavaMap_Prod.csv and CassavaMap_HarvArea.csv files. <br><br>The CassavaMap_Prod.csv and CassavaMap_HarvArea.csv include information on source of statistics data, year of data records, administrative level, rural population number per administrative unit, per capita production/harvested area, FAOSTAT production/harvested area per country in 2014, and per capita production/harvested area values adjusted to national production levels in 2014 as listed by FAOSTAT. Newer versions of CassavaMap will appear in the repository as updated cassava production data become available.
DOI: 10.6084/m9.figshare.9745109
title: Wisocki et al. 2019 Nature Ecology and Evolution.zip

description: Dataset accompanying Wisocki et al 2019<br>
DOI: 10.6084/m9.figshare.9745061
title: turf_seeds_raw_data

description: Raw data of a 16S metagenomic analysis on the bacterial community associated with cool-season turf grass seeds. The data was generated by Illumina MiSeq platform.
DOI: 10.23641/asha.9745010
title: Development of CIQOL instruments (McRackan et al., 2019)

description: <b>Purpose: </b>Valid, reliable, and efficient patient-reported outcome measures are needed to quantify quality of life (QOL) outcomes after cochlear implantation to supplement information obtained from performance-based outcomes. We previously developed the Cochlear Implant Quality of Life (CIQOL) item bank to serve as the source of items for subsequent instruments. This study reports the development and psychometric properties for 2 of these new instruments, the CIQOL-35 Profile and the CIQOL-10 Global.<b>Method:</b> Cochlear implant (CI) users referred from the CIQOL Development Consortium (<i>n</i> = 371), consisting of 20 CI centers across the United States, provided responses to the 81-item CIQOL item bank, which are grouped into 6 QOL domains (communication, emotional, entertainment, environment, listening effort, and social). Responses to the 81 CIQOL items were analyzed using item response theory to determine individual item difficulty, discrimination, and model fit to select the set of items for the profile instrument and global measure that would optimize their measurement characteristics.<b>Results: </b>The 35-item CIQOL-35 Profile instrument assesses outcomes represented in the 6 domains of the CIQOL final item pool. The 10-item CIQOL-10 Global measure produces a single, overall QOL score. After ensuring the upper and lower ends of the item difficulty continuum were represented (item difficulty range: −2.48 to 2.47), the items with the highest discrimination ability for each domain were selected for the CIQOL-35 Profile instrument (discrimination range: 0.67–1.37). Items were selected for the CIQOL-10 Global measure in a similar manner.<b>Conclusion:</b> The CIQOL-35 Profile and CIQOL-10 Global instruments provide psychometrically sound and efficient measures that can be used to assess QOL in adult CI users in both clinical and research settings.<br><b>Supplemental Material S1. </b>Item parameter estimations and fit statistics for the full CIQOL-item bank for development of the CIQOL-35 Profile instrument. <br><b>Supplemental Material S2.</b> Item parameters and fit statistics for the CIQOL-35 Profile instrument for CIQOL-10 Global instrument development.<br><br>McRackan, T. R., Hand, B. N., Cochlear Implant Quality of Life Development Consortium, Velozo, C. A., & Dubno, J. R. (2019). Cochlear Implant Quality of Life (CIQOL): Development of a profile instrument (CIQOL-35 Profile) and a global measure (CIQOL-10 Global). <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2019_JSLHR-H-19-0142
DOI: 10.23641/asha.9745010.v1
title: Development of CIQOL instruments (McRackan et al., 2019)

description: <b>Purpose: </b>Valid, reliable, and efficient patient-reported outcome measures are needed to quantify quality of life (QOL) outcomes after cochlear implantation to supplement information obtained from performance-based outcomes. We previously developed the Cochlear Implant Quality of Life (CIQOL) item bank to serve as the source of items for subsequent instruments. This study reports the development and psychometric properties for 2 of these new instruments, the CIQOL-35 Profile and the CIQOL-10 Global.<b>Method:</b> Cochlear implant (CI) users referred from the CIQOL Development Consortium (<i>n</i> = 371), consisting of 20 CI centers across the United States, provided responses to the 81-item CIQOL item bank, which are grouped into 6 QOL domains (communication, emotional, entertainment, environment, listening effort, and social). Responses to the 81 CIQOL items were analyzed using item response theory to determine individual item difficulty, discrimination, and model fit to select the set of items for the profile instrument and global measure that would optimize their measurement characteristics.<b>Results: </b>The 35-item CIQOL-35 Profile instrument assesses outcomes represented in the 6 domains of the CIQOL final item pool. The 10-item CIQOL-10 Global measure produces a single, overall QOL score. After ensuring the upper and lower ends of the item difficulty continuum were represented (item difficulty range: −2.48 to 2.47), the items with the highest discrimination ability for each domain were selected for the CIQOL-35 Profile instrument (discrimination range: 0.67–1.37). Items were selected for the CIQOL-10 Global measure in a similar manner.<b>Conclusion:</b> The CIQOL-35 Profile and CIQOL-10 Global instruments provide psychometrically sound and efficient measures that can be used to assess QOL in adult CI users in both clinical and research settings.<br><b>Supplemental Material S1. </b>Item parameter estimations and fit statistics for the full CIQOL-item bank for development of the CIQOL-35 Profile instrument. <br><b>Supplemental Material S2.</b> Item parameters and fit statistics for the CIQOL-35 Profile instrument for CIQOL-10 Global instrument development.<br><br>McRackan, T. R., Hand, B. N., Cochlear Implant Quality of Life Development Consortium, Velozo, C. A., & Dubno, J. R. (2019). Cochlear Implant Quality of Life (CIQOL): Development of a profile instrument (CIQOL-35 Profile) and a global measure (CIQOL-10 Global). <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2019_JSLHR-H-19-0142
DOI: 10.6084/m9.figshare.9744953
title: Oak and shrub recruitment in abandoned fields over 30 years

description: The data includes the recruitment of two oak species by year and the accumulated recruitment of a nurse shrub in 20 transects in abandoned fields of Central Spain. Moreover, some climatic variables and characteristics of the adjacent forest are included. The data is associated with the Journal of Ecology publication "Long-term dynamics of shrub facilitation shape the mixing of evergreen and deciduous oaks in Mediterranean abandoned fields"<br>
DOI: 10.6084/m9.figshare.9744953.v1
title: Oak and shrub recruitment in abandoned fields over 30 years

description: The data includes the recruitment of two oak species by year and the accumulated recruitment of a nurse shrub in 20 transects in abandoned fields of Central Spain. Moreover, some climatic variables and characteristics of the adjacent forest are included. The data is associated with the Journal of Ecology publication "Long-term dynamics of shrub facilitation shape the mixing of evergreen and deciduous oaks in Mediterranean abandoned fields"<br>
DOI: 10.6084/m9.figshare.9744899
title: Group Antental Care_Comparative Study_Data and CodeBook

description: These data were collected from women in Nigeria and Kenya attending antental care. Two models of care were compared along a number of dimensions.
DOI: 10.6084/m9.figshare.9744857
title: Chen_GRL_2019

description: The data in this repository supports the analysis of Chen, Liu and Zhang (2019 submitted), Geophysical Research Letters.
DOI: 10.6084/m9.figshare.9744899.v1
title: Group Antental Care_Comparative Study_Data and CodeBook

description: These data were collected from women in Nigeria and Kenya attending antental care. Two models of care were compared along a number of dimensions.
DOI: 10.6084/m9.figshare.9744809
title: avian_prelaying_egg_rotation.zip

description: <b>pelvic_sexual_dimorphism:</b> This folder contains R codes and plots regarding pelvic sexual dimorphism tests.<b>prelaying_egg_rotation:</b> This folder contains R codes, data, outputs, and plots regarding prelaying egg rotation tests.<b>correlation:</b> This folder contains files regarding correlations between continuous predictors.<b>PGLS:</b> This folder contains files regarding regression models.<b>phylogeny:</b> This folder contains tree files from TimeTree.org and Shatkovska et al. (2018)<b>retrodiction:</b> This folder contains files regarding moa egg mass phylogenetic prediction.<b>1896.Wickmann.German.docx:</b> This Word file is Wickmann’s (1896) paper in German.<b>1896.Wickmann.English.Translation.docx:</b> This Word file is the English translation of Wickmann’s (1896) paper, translated using Google Translate.<b>AvianPrelayingEggRotation.Dataset.xlsx:</b> This Excel file contains raw and processed data for all analyses.<b>AvianPrelayingEggRotation.Results.xlsx:</b> This Excel file contains processed outputs and results for all analyses.<b>AvianPrelayingEggRotation.Summary.xlsx:</b> This Excel file contains sample summary statistics and species inclusion criteria.<br>
DOI: 10.6084/m9.figshare.9744809.v2
title: avian_prelaying_egg_rotation.zip

description: <b>pelvic_sexual_dimorphism:</b> This folder contains R codes and plots regarding pelvic sexual dimorphism tests.<b>prelaying_egg_rotation:</b> This folder contains R codes, data, outputs, and plots regarding prelaying egg rotation tests.<b>correlation:</b> This folder contains files regarding correlations between continuous predictors.<b>PGLS:</b> This folder contains files regarding regression models.<b>phylogeny:</b> This folder contains tree files from TimeTree.org and Shatkovska et al. (2018)<b>retrodiction:</b> This folder contains files regarding moa egg mass phylogenetic prediction.<b>1896.Wickmann.German.docx:</b> This Word file is Wickmann’s (1896) paper in German.<b>1896.Wickmann.English.Translation.docx:</b> This Word file is the English translation of Wickmann’s (1896) paper, translated using Google Translate.<b>AvianPrelayingEggRotation.Dataset.xlsx:</b> This Excel file contains raw and processed data for all analyses.<b>AvianPrelayingEggRotation.Results.xlsx:</b> This Excel file contains processed outputs and results for all analyses.<b>AvianPrelayingEggRotation.Summary.xlsx:</b> This Excel file contains sample summary statistics and species inclusion criteria.<br>
DOI: 10.6084/m9.figshare.9744809.v4
title: avian_prelaying_egg_rotation.zip

description: <b>pelvic_sexual_dimorphism:</b> This folder contains R codes and plots regarding pelvic sexual dimorphism tests.<b>prelaying_egg_rotation:</b> This folder contains R codes, data, outputs, and plots regarding prelaying egg rotation tests.<b>correlation:</b> This folder contains files regarding correlations between continuous predictors.<b>PGLS:</b> This folder contains files regarding regression models.<b>phylogeny:</b> This folder contains tree files from TimeTree.org and Shatkovska et al. (2018)<b>retrodiction:</b> This folder contains files regarding moa egg mass phylogenetic prediction.<b>1896.Wickmann.German.docx:</b> This Word file is Wickmann’s (1896) paper in German.<b>1896.Wickmann.English.Translation.docx:</b> This Word file is the English translation of Wickmann’s (1896) paper, translated using Google Translate.<b>AvianPrelayingEggRotation.Dataset.xlsx:</b> This Excel file contains raw and processed data for all analyses.<b>AvianPrelayingEggRotation.Results.xlsx:</b> This Excel file contains processed outputs and results for all analyses.<b>AvianPrelayingEggRotation.Summary.xlsx:</b> This Excel file contains sample summary statistics and species inclusion criteria.<br>