cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5661538
title: Additional file 2: Table S1. of MetaLab: an automated pipeline for metaproteomic data analysis

description: List of LCAs calculated by MetaLab built-in database module. (XLSX 17593Â kb)
DOI: 10.6084/m9.figshare.5661538.v1
title: Additional file 2: Table S1. of MetaLab: an automated pipeline for metaproteomic data analysis

description: List of LCAs calculated by MetaLab built-in database module. (XLSX 17593Â kb)
DOI: 10.6084/m9.figshare.5661556
title: Additional file 3: Table S2. of MetaLab: an automated pipeline for metaproteomic data analysis

description: List of LCAs calculated by Unipept. (CSV 9146Â kb)
DOI: 10.6084/m9.figshare.5661556.v1
title: Additional file 3: Table S2. of MetaLab: an automated pipeline for metaproteomic data analysis

description: List of LCAs calculated by Unipept. (CSV 9146Â kb)
DOI: 10.6084/m9.figshare.5665531
title: Additional file 1: Table S1. of Functional analysis of the GRMZM2G174449 promoter to identify Rhizoctonia solani-inducible cis-elements in maize

description: Information on the PCR primers used in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665531.v1
title: Additional file 1: Table S1. of Functional analysis of the GRMZM2G174449 promoter to identify Rhizoctonia solani-inducible cis-elements in maize

description: Information on the PCR primers used in this study. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665648
title: Additional file 1: Table S1. of Clinical significance of PCDH10 promoter methylation in diffuse large B-cell lymphoma

description: The clinicopathological characteristics and PCDH10 methylation status of 107 cases are showed in this table. (XLS 32 kb)
DOI: 10.6084/m9.figshare.5665666
title: Additional file 2: Table S2. of Clinical significance of PCDH10 promoter methylation in diffuse large B-cell lymphoma

description: The details of survival (OS and PFS) and other clinicopathological characteristics of 65 RCHOP-treated cases are showed in this table. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5665666.v1
title: Additional file 2: Table S2. of Clinical significance of PCDH10 promoter methylation in diffuse large B-cell lymphoma

description: The details of survival (OS and PFS) and other clinicopathological characteristics of 65 RCHOP-treated cases are showed in this table. (XLS 40 kb)
DOI: 10.6084/m9.figshare.5665744
title: MOESM3 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 3: Sheet 1. Statistical analysis of the growth curve data. Sheet 2. Statistical analysis of the fermentation data.
DOI: 10.6084/m9.figshare.5665744.v1
title: MOESM3 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 3: Sheet 1. Statistical analysis of the growth curve data. Sheet 2. Statistical analysis of the fermentation data.
DOI: 10.6084/m9.figshare.5665759
title: MOESM4 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 4: Sheet 1. Differentially expressed genes for KH_43 vs C_43. Sheet 2. Differentially expressed genes for KM_43 vs C_43. Sheet 3. Consensus genes regulated by KmHsf1 and KmMsn2.
DOI: 10.6084/m9.figshare.5665759.v1
title: MOESM4 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 4: Sheet 1. Differentially expressed genes for KH_43 vs C_43. Sheet 2. Differentially expressed genes for KM_43 vs C_43. Sheet 3. Consensus genes regulated by KmHsf1 and KmMsn2.
DOI: 10.6084/m9.figshare.5665801
title: MOESM6 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 6. Primers used in this study.
DOI: 10.6084/m9.figshare.5665801.v1
title: MOESM6 of The transcription factors Hsf1 and Msn2 of thermotolerant Kluyveromyces marxianus promote cell growth and ethanol fermentation of Saccharomyces cerevisiae at high temperatures

description: Additional file 6. Primers used in this study.
DOI: 10.6084/m9.figshare.5665864
title: Additional file 2: Table S1. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Statistics of RNA sequencing reads of single cells. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.5665864.v1
title: Additional file 2: Table S1. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Statistics of RNA sequencing reads of single cells. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.5665885
title: Additional file 3: Table S2. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Top 30 ANOVA ranked genes for E11.5 ~ E16.5 hepatoblast. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665885.v1
title: Additional file 3: Table S2. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Top 30 ANOVA ranked genes for E11.5 ~ E16.5 hepatoblast. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665906
title: Additional file 4: Tables S3. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Transcription factors differentially expressed between hepatoblast and cholangiocyte for covariance networks. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665906.v1
title: Additional file 4: Tables S3. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Transcription factors differentially expressed between hepatoblast and cholangiocyte for covariance networks. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665912
title: Additional file 1: Table S1. of Genetic diversity and association mapping of mineral element concentrations in spinach leaves

description: Spinach PI accession number, name, origin/country, cluster assigned in this study, taxon name, and 14 mineral element concentrations in 292 germplasm accessions. Table S2. Spinach PI accession number, taxon name, origin country, cluster assigned in this study, mineral element, mineral ID ranked in top three, and 14 mineral element concentrations in 292 germplasm accessions. (XLSX 105 kb)
DOI: 10.6084/m9.figshare.5665924
title: Additional file 5: Table S4. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Primers used for single-cell qPCR. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5665924.v1
title: Additional file 5: Table S4. of Single-cell RNA-Seq analysis reveals dynamic trajectories during mouse liver development

description: Primers used for single-cell qPCR. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5665933
title: Additional file 2: Figure S1. of Genetic diversity and association mapping of mineral element concentrations in spinach leaves

description: The ring phylogenetic tree combining structure populations (Q1 to Q4) from STRUCTUREÂ 2 and the Maximum Likelihood (ML) method from MEGA 6. The spinach accession number, the accession original country, and the structure population (cluster) were merged together into one taxon name as each spinach accession ID in the combined tree drawn by MEGA 6. The colored shape and branch of each cluster matched the structure population (red round shape for Q1, green triangle for Q2, blue triangle for Q3, yellow diamond for Q4, and the black square with the black branch for the admixture in 292 USDA GRIN spinach germplasm accessions. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.5665933.v1
title: Additional file 2: Figure S1. of Genetic diversity and association mapping of mineral element concentrations in spinach leaves

description: The ring phylogenetic tree combining structure populations (Q1 to Q4) from STRUCTUREÂ 2 and the Maximum Likelihood (ML) method from MEGA 6. The spinach accession number, the accession original country, and the structure population (cluster) were merged together into one taxon name as each spinach accession ID in the combined tree drawn by MEGA 6. The colored shape and branch of each cluster matched the structure population (red round shape for Q1, green triangle for Q2, blue triangle for Q3, yellow diamond for Q4, and the black square with the black branch for the admixture in 292 USDA GRIN spinach germplasm accessions. (XLSX 149 kb)
DOI: 10.15468/vbrbs9
title: Plants and fungi of the basins of the Mokra Sura, Domotkan, Samotkan, Omelnyk, Saksahan, Mertvovod, Siversky Donets rivers and the gulch-ravine system of the Rightcoastal steppe of the Dnieper

description: The dataset contains data on the distribution of 500 plant species, obtained as a result of 20 geobotanical descriptions of vegetation.
DOI: 10.6084/m9.figshare.5665981
title: Additional file 1: of The pleural fluid lactate dehydrogenase/adenosine deaminase ratio differentiates between tuberculous and parapneumonic pleural effusions

description: Excel: Pleural fluid results of LDHADA of the TPE and PPE patients. (XLS 26 kb)
DOI: 10.6084/m9.figshare.5665981.v1
title: Additional file 1: of The pleural fluid lactate dehydrogenase/adenosine deaminase ratio differentiates between tuberculous and parapneumonic pleural effusions

description: Excel: Pleural fluid results of LDHADA of the TPE and PPE patients. (XLS 26 kb)
DOI: 10.6084/m9.figshare.5665993
title: Additional file 10: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Bayesian posterior output of Model 1. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665993.v1
title: Additional file 10: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Bayesian posterior output of Model 1. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5665999
title: Additional file 2: of Choice of surrogate tissue influences neonatal EWAS findings

description: Tab-delimited file containing DNA methylation values for 295 cord tissue samples, 239,560 CpGs. (TXT 615004 kb)
DOI: 10.6084/m9.figshare.5665999.v1
title: Additional file 2: of Choice of surrogate tissue influences neonatal EWAS findings

description: Tab-delimited file containing DNA methylation values for 295 cord tissue samples, 239,560 CpGs. (TXT 615004 kb)
DOI: 10.6084/m9.figshare.5666008
title: Additional file 1: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Sampling information of Mogou site. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5666008.v1
title: Additional file 1: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Sampling information of Mogou site. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.5666017
title: Additional file 2: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Primers used in this study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5666017.v1
title: Additional file 2: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Primers used in this study. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5666038
title: Additional file 5: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Variable sites of mitochondrial HVS-I sequences and Y chromosome haplogroups of researchers. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5666038.v1
title: Additional file 5: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Variable sites of mitochondrial HVS-I sequences and Y chromosome haplogroups of researchers. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.5666044
title: Additional file 7: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Result of AMOVA variance explained by different groupings of populations according to geography and language. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5666044.v1
title: Additional file 7: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Result of AMOVA variance explained by different groupings of populations according to geography and language. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.5666047
title: Additional file 8: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Population pairwise genetic distance Fst. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5666047.v1
title: Additional file 8: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Population pairwise genetic distance Fst. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.5666050
title: Additional file 3: of Choice of surrogate tissue influences neonatal EWAS findings

description: Tab-delimited file containing DNA methylation values for 295 cord blood samples, 239,560 CpGs. (TXT 613902 kb)
DOI: 10.6084/m9.figshare.5666050.v1
title: Additional file 3: of Choice of surrogate tissue influences neonatal EWAS findings

description: Tab-delimited file containing DNA methylation values for 295 cord blood samples, 239,560 CpGs. (TXT 613902 kb)
DOI: 10.6084/m9.figshare.5666053
title: Additional file 9: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Haplogroup frequencies of Mogou, Hengbei, Taojiazhai, and modern Chinese groups. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5666053.v1
title: Additional file 9: of Ancient DNA reveals genetic connections between early Di-Qiang and Han Chinese

description: Haplogroup frequencies of Mogou, Hengbei, Taojiazhai, and modern Chinese groups. (XLSX 26Â kb)
DOI: 10.6084/m9.figshare.5666221
title: The role of histone deacetylase inhibitors in regulation of Akt/GSK-3β signaling pathway in mice following transient focal cerebral ischemia

description: Abstract Purpose: To investigate whether the neuroprotective effect of TSA on cerebral ischemia reperfusion injury is mediated by the activation of Akt/GSK-3β signaling pathway. Methods: Mice were randomly divided into four groups (n=15): sham group (S); ischemia reperfusion group (IR); ischemia reperfusion and pretreated with TSA group (IR+T); ischemia reperfusion and pretreated with TSA and LY294002 group (IR+T+L). The model of cerebral ischemia reperfusion was established by 1h of MCAO following 24h of reperfusion. TSA (5mg/kg) was intraperitoneally given for 3 days before MCAO, Akt inhibitor, LY294002 (15 nmol/kg) was injected by tail vein 30 min before the MCAO. Results: TSA significantly increased the expression of p-Akt, p-GSK-3β proteins and the levels of SOD, Bcl-2, reduced the infarct volume and the levels of MDA, ROS, TNF-α, IL-1β, Bax, Caspase-3, TUNEL and attenuated neurological deficit in mice with transient MCAO, LY294002 weakened such effect of TSA dramatically. Conclusions: TSA could significantly decrease the neurological deficit and reduce the cerebral infarct volume, oxidative stress, inflammation, as well as apoptosis during cerebral ischemia reperfusion injury, which was achieved by activation of the Akt/GSK-3β signaling pathway.
DOI: 10.6084/m9.figshare.5666221.v1
title: The role of histone deacetylase inhibitors in regulation of Akt/GSK-3β signaling pathway in mice following transient focal cerebral ischemia

description: Abstract Purpose: To investigate whether the neuroprotective effect of TSA on cerebral ischemia reperfusion injury is mediated by the activation of Akt/GSK-3β signaling pathway. Methods: Mice were randomly divided into four groups (n=15): sham group (S); ischemia reperfusion group (IR); ischemia reperfusion and pretreated with TSA group (IR+T); ischemia reperfusion and pretreated with TSA and LY294002 group (IR+T+L). The model of cerebral ischemia reperfusion was established by 1h of MCAO following 24h of reperfusion. TSA (5mg/kg) was intraperitoneally given for 3 days before MCAO, Akt inhibitor, LY294002 (15 nmol/kg) was injected by tail vein 30 min before the MCAO. Results: TSA significantly increased the expression of p-Akt, p-GSK-3β proteins and the levels of SOD, Bcl-2, reduced the infarct volume and the levels of MDA, ROS, TNF-α, IL-1β, Bax, Caspase-3, TUNEL and attenuated neurological deficit in mice with transient MCAO, LY294002 weakened such effect of TSA dramatically. Conclusions: TSA could significantly decrease the neurological deficit and reduce the cerebral infarct volume, oxidative stress, inflammation, as well as apoptosis during cerebral ischemia reperfusion injury, which was achieved by activation of the Akt/GSK-3β signaling pathway.
DOI: 10.6084/m9.figshare.5666299
title: Simultaneous Determination of Nonylphenol and Nonylphenol Ethoxylates in Wastewater Samples from Biodegradation Process by High Performance Liquid Chromatography Method

description: The degradation products of nonylphenol ethoxylates (NPnEO), nonylphenol (NP) and short-chain NPnEO are representative of environmental endocrine disruptors. They possess strong lipophilicity, toxicity, cumulative property and estrogenic effect. They can pollute the environment, cause body precocious, and induce the body's estrogen-sensitive cancer cell proliferation. A fast method using high performance liquid chromatography (HPLC) was developed to simultaneously quantify NP and 11 kinds of NPnEO in wastewater samples. The influence of mobile phase composition, mobile phase ratio, mobile phase flow rate, column temperature and sample injection volume on the separation effect was studied. Under the optimized conditions, NP and 11 kinds of NPnEO were separated successfully within 35 min. The method showed good linearity for NP and 11 kinds of NPnEO (n = 1-11). The linear correlation coefficients for the standard curves were 0.9720- 0.9999. The precision degree of the method was reliable and all the relative standard deviation (RSD) values (n = 0-11) obtained were less than 5.0%.
DOI: 10.6084/m9.figshare.5666299.v1
title: Simultaneous Determination of Nonylphenol and Nonylphenol Ethoxylates in Wastewater Samples from Biodegradation Process by High Performance Liquid Chromatography Method

description: The degradation products of nonylphenol ethoxylates (NPnEO), nonylphenol (NP) and short-chain NPnEO are representative of environmental endocrine disruptors. They possess strong lipophilicity, toxicity, cumulative property and estrogenic effect. They can pollute the environment, cause body precocious, and induce the body's estrogen-sensitive cancer cell proliferation. A fast method using high performance liquid chromatography (HPLC) was developed to simultaneously quantify NP and 11 kinds of NPnEO in wastewater samples. The influence of mobile phase composition, mobile phase ratio, mobile phase flow rate, column temperature and sample injection volume on the separation effect was studied. Under the optimized conditions, NP and 11 kinds of NPnEO were separated successfully within 35 min. The method showed good linearity for NP and 11 kinds of NPnEO (n = 1-11). The linear correlation coefficients for the standard curves were 0.9720- 0.9999. The precision degree of the method was reliable and all the relative standard deviation (RSD) values (n = 0-11) obtained were less than 5.0%.
DOI: 10.6084/m9.figshare.5666464
title: Returning Winter Cover Crop Residue Influences Soil Aggregation and Humic Substances under Double-cropped Rice Fields

description: ABSTRACT Residue management in cropping systems may improve soil quality. However, there are few studies on the effects of residue management on soil aggregation and carbon content in the humin (C-HUM), humic acid (C-HAF) and fulvic acid (C-FAF) fractions in South China. Therefore, the effects on soil aggregation and on the C-HUM, C-HAF, C-FAF from incorporating winter cover crop residues in a double-cropped rice (Oryza sativa L.) system in South China fields were studied. The experiment has been conducted since winter 2004. Five winter cropping systems were used: rice-rice-ryegrass (Ry-R-R), rice-rice-Chinese milk vetch (Mv-R-R), rice-rice-potato (Po-R-R), rice-rice-rape (Ra-R-R) and rice-rice with winter fallow (Fa-R-R). The results indicated that the organic C content in the paddy soil under the Ry-R-R, Mv-R-R, Po-R-R, and Ra-R-R systems was significantly higher than the content in the Fa-R-R system at the early rice and late rice maturity stages. The different sizes of aggregates under the five treatments showed similar trends. The Po-R-R systems had the highest percentage of soil aggregates in each size class and the Fa-R-R systems had the lowest percentage of soil aggregates in each size class in the 0.00-0.05, 0.05-0.10, and 0.10-0.20 m soil depth at the early rice and late rice maturity stages. The C-HUM, C-HAF, and C-FAF increased through long-term application of winter cover crop residues. Statistical analysis showed that the C-HAF under the Ra-R-R systems was significantly higher than that in the Fa-R-R systems at the early rice and late rice maturity stages. The C-FAF and C-HUM under the Mv-R-R systems was significantly higher than the C-FAF and C-HUM in the Fa-R-R systems at the early rice and late rice maturity stages. As a result, the soil organic C content, the soil aggregates in each size class, and the C-HUM, C-HAF, and C-FAF increased from application of winter cover crop residues in double-cropped rice systems.
DOI: 10.6084/m9.figshare.5666464.v1
title: Returning Winter Cover Crop Residue Influences Soil Aggregation and Humic Substances under Double-cropped Rice Fields

description: ABSTRACT Residue management in cropping systems may improve soil quality. However, there are few studies on the effects of residue management on soil aggregation and carbon content in the humin (C-HUM), humic acid (C-HAF) and fulvic acid (C-FAF) fractions in South China. Therefore, the effects on soil aggregation and on the C-HUM, C-HAF, C-FAF from incorporating winter cover crop residues in a double-cropped rice (Oryza sativa L.) system in South China fields were studied. The experiment has been conducted since winter 2004. Five winter cropping systems were used: rice-rice-ryegrass (Ry-R-R), rice-rice-Chinese milk vetch (Mv-R-R), rice-rice-potato (Po-R-R), rice-rice-rape (Ra-R-R) and rice-rice with winter fallow (Fa-R-R). The results indicated that the organic C content in the paddy soil under the Ry-R-R, Mv-R-R, Po-R-R, and Ra-R-R systems was significantly higher than the content in the Fa-R-R system at the early rice and late rice maturity stages. The different sizes of aggregates under the five treatments showed similar trends. The Po-R-R systems had the highest percentage of soil aggregates in each size class and the Fa-R-R systems had the lowest percentage of soil aggregates in each size class in the 0.00-0.05, 0.05-0.10, and 0.10-0.20 m soil depth at the early rice and late rice maturity stages. The C-HUM, C-HAF, and C-FAF increased through long-term application of winter cover crop residues. Statistical analysis showed that the C-HAF under the Ra-R-R systems was significantly higher than that in the Fa-R-R systems at the early rice and late rice maturity stages. The C-FAF and C-HUM under the Mv-R-R systems was significantly higher than the C-FAF and C-HUM in the Fa-R-R systems at the early rice and late rice maturity stages. As a result, the soil organic C content, the soil aggregates in each size class, and the C-HUM, C-HAF, and C-FAF increased from application of winter cover crop residues in double-cropped rice systems.