cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.18282506.v1
title: The prognostic value of surgical delay in patients undergoing major emergency abdominal surgery: a systematic review and meta-analysis

description: Mortality following major emergency abdominal surgery is high. Surgical delay is regarded as an important modifiable prognostic factor. Current care-bundles aim at reducing surgical delay, most often using a six-hour cut-off. We aimed to investigate the evidence supporting the in-hospital delay cutoffs currently used. MEDLINE, EMBASE and the Cochrane Library were searched. We included studies assessing in-hospital surgical delay in major emergency abdominal surgery patients. Studies were only included if they performed adjusted analysis. Surgical delay beyond six hours was the primary cutfrom interest. The primary outcome was mortality at longest follow-up. Meta-analyses were conducted if possible. Eleven observational studies were included with 16,772 participants. Two studies evaluated delay in unselected major emergency abdominal surgery patients. Three studies applied a six-hour cutoff, but only a study on acute mesenteric ischemia showed an association between delay and mortality. Meta-analysis showed no association with mortality at this cutoff. An association was seen between hourly delay and mortality risk estimate, 1.02 (95% confidence interval [CI], 1.00 − 1.03), and on subgroup analysis of hourly delay in perforated peptic ulcer patients, risk estimate, 1.02 (95% CI, 1.0 − 1.03). All risk estimates had a very low Grading of Recommendations Assessment, Development, and Evaluation score. Little evidence supports a six-hour cutoff in unselected major emergency abdominal surgical patients. We found an association between hourly delay and increased mortality; however, evidence supporting this was primarily in patients undergoing surgery for perforated peptic ulcer. This review is limited by the quality of the individual studies.
DOI: 10.6084/m9.figshare.18865376.v1
title: CC-CLEAR (Colon Capsule Cleansing Assessment and Report): the novel scale to evaluate the clinical impact of bowel preparation in capsule colonoscopy – a multicentric validation study

description: Colon Capsule Cleansing Assessment and Report (CC-CLEAR) is a novel quantitative bowel preparation scale for colon capsule. The aim of this study is to validate the association between CC-CLEAR’s classification and major CC outcomes: lesion detection rate, surveillance recommendations and post-CC endoscopic treatment. Multicentric cohort of consecutive CCs. An expert’s panel decided post-CC recommendations. Data included CC-CLEAR and Leighton-REX scales. Major CC outcomes were associated with the different cleansing grades. From 168 CC’s included, findings were reported in 123 (73.2%), 67 (54.4%) of those being colorectal polyps. CC-CLEAR influenced CC’s lesion detection (OR 1.25 95% IC [1.07–1.46], <i>p</i>-value .004) and polyp detection rate (OR 1.22 95% IC [1.04–1.43], <i>p</i>-value.014). Thirty-two (19%) post-CC colonoscopies were recommended, including 22 (68.75%) with at least one polypectomy. CC-CLEAR was associated with post-CC colonoscopy treatment (OR 1.40 95% IC [1.07–1.84], <i>p</i>-value .015). Regarding surveillance, CC-CLEAR influenced the decision for immediate CC repetition (OR 0.21 95% IC [0.12–0.36], <i>p</i>-value &lt; .001) and the recommendation for CC in 3–5 years’ time (OR 1.47 95% IC [1.50–1.86], <i>p</i>-value &lt; .002). The Leighton–Rex scale was not correlated with major CC outcomes. CC-CLEAR impacts major CC outcomes: lesion detection, surveillance recommendations and post-CC endoscopic treatment.
DOI: 10.6084/m9.figshare.18865376
title: CC-CLEAR (Colon Capsule Cleansing Assessment and Report): the novel scale to evaluate the clinical impact of bowel preparation in capsule colonoscopy – a multicentric validation study

description: Colon Capsule Cleansing Assessment and Report (CC-CLEAR) is a novel quantitative bowel preparation scale for colon capsule. The aim of this study is to validate the association between CC-CLEAR’s classification and major CC outcomes: lesion detection rate, surveillance recommendations and post-CC endoscopic treatment. Multicentric cohort of consecutive CCs. An expert’s panel decided post-CC recommendations. Data included CC-CLEAR and Leighton-REX scales. Major CC outcomes were associated with the different cleansing grades. From 168 CC’s included, findings were reported in 123 (73.2%), 67 (54.4%) of those being colorectal polyps. CC-CLEAR influenced CC’s lesion detection (OR 1.25 95% IC [1.07–1.46], <i>p</i>-value .004) and polyp detection rate (OR 1.22 95% IC [1.04–1.43], <i>p</i>-value.014). Thirty-two (19%) post-CC colonoscopies were recommended, including 22 (68.75%) with at least one polypectomy. CC-CLEAR was associated with post-CC colonoscopy treatment (OR 1.40 95% IC [1.07–1.84], <i>p</i>-value .015). Regarding surveillance, CC-CLEAR influenced the decision for immediate CC repetition (OR 0.21 95% IC [0.12–0.36], <i>p</i>-value &lt; .001) and the recommendation for CC in 3–5 years’ time (OR 1.47 95% IC [1.50–1.86], <i>p</i>-value &lt; .002). The Leighton–Rex scale was not correlated with major CC outcomes. CC-CLEAR impacts major CC outcomes: lesion detection, surveillance recommendations and post-CC endoscopic treatment.
DOI: 10.5281/zenodo.6510402
title: Molecular Dynamics simulation dataset for : Hypoxia increases the methylated histones to prevent histone clipping and redistribution of heterochromatin during Raf-induced senescence.

description: Files are Initial structures of Cathepsin L(CTSL) with histone H3 peptides (naive and K23me3) and their Molecular Dynamics simulation trajectories. AutoDock Vina and Charmm were used in H3 peptide docking. Wild type CTSL was modeled with apo-Cathepsin L C25A mutant(PDB ID : 3K24) using Charmm-GUI. Trimethylated histone H3 peptide was generated with PyMol. H3 peptide Molecular Dynamics simulations were performed with GPU-accelerated OpenMM.
DOI: 10.5281/zenodo.6510401
title: Molecular Dynamics simulation dataset for : Hypoxia increases the methylated histones to prevent histone clipping and redistribution of heterochromatin during Raf-induced senescence.

description: Files are Initial structures of Cathepsin L(CTSL) with histone H3 peptides (naive and K23me3) and their Molecular Dynamics simulation trajectories. AutoDock Vina and Charmm were used in H3 peptide docking. Wild type CTSL was modeled with apo-Cathepsin L C25A mutant(PDB ID : 3K24) using Charmm-GUI. Trimethylated histone H3 peptide was generated with PyMol. H3 peptide Molecular Dynamics simulations were performed with GPU-accelerated OpenMM.
DOI: 10.5281/zenodo.6510445
title: How have views on Software Quality shifted: theoretical and practical viewpoints (Replication package)

description: Theoretical and practical viewpoints on the quality of code snippets.
DOI: 10.5281/zenodo.6420035
title: WHUL8-CDb part 1-11

description: This is the first part (11/64)of WHUL8-CDb dataset.
DOI: 10.5281/zenodo.6420034
title: WHUL8-CDb part 1-11

description: This is the first part (11/64)of WHUL8-CDb dataset.
DOI: 10.5281/zenodo.6510456
title: Data for "Spin-charge separation in a 1D Fermi gas with tunable interactions"

description: This dataset is corresponding to the article "Spin-charge separation in a 1D Fermi gas with tunable interactions"
DOI: 10.6084/m9.figshare.16619773.v12
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.5281/zenodo.6415140
title: WHUL8-CDb, a block-level labelled cloud detection dataset collected from Landsat 8

description: WHUL8-CDb was collected for the training of weakly-supervised cloud detection methods. It includes 500 globally distributed Landsat 8 Level-1C images (Fig. 1) collected following the distribution of the L8 Biome dataset as it comes to biomes and dominant land cover types. The motivation is that clouds are similar with each other in different regions, while the backgrounds are very different. In order to increase the diversity of training samples, we selected images with more background pixels by setting the cloud percentage from 0 to 50 when searching images. To handle all cloud situations, 5 images full of clouds were collected and included in WHUL8-CDb.
DOI: 10.5281/zenodo.6467663
title: WHUL8-CDb part 12-22

description: This is the second part (12~22) of WHUL8-CDb dataset.
DOI: 10.5281/zenodo.6467662
title: WHUL8-CDb part 12-22

description: This is the second part (12~22) of WHUL8-CDb dataset.
DOI: 10.6084/m9.figshare.16619773.v13
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.16619773.v14
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.19660929.v1
title: Genetic diversity, gene flow and differentiation among wild, semiwild and landrace chile pepper (Capsicum annuum) populations in Oaxaca, Mexico.

description: Table of microsatellite genotyping on chile pepper individuals obtained from 28 populations in the state of Oaxaca, Mexico. <br> Columns 1 and 2: describe samples ID Column 3: Location name Column 4: Region within Oaxaca State (Cañada, Central Valleys or Coast) Column 5: Species (<em>Capsicum annuum, Capsicum frutescens</em> or <em>Capsicum chinense</em>) Column 6: Domestication level (Cultivated, Semiwild or Wild, and species name when different from <em>C. annuum</em>) Column 7: Type of pepper, indicating the landrace name (available for all but four individuals) Column 8: Management regime (Forest, Backyard, Milpa or Monoculture) Columns 9-28: Microsatellite marker genotyping (pair of columns per marker)
DOI: 10.17903/fk2/h8fg6c
title: The experience of war and occupation in the urban centers of the Bulgarian occupation zone. The case study of Xanthi.

description: The aim of the research is to investigate the way in which the war and the consequent occupation affected the daily life of the inhabitants in the urban centers of Eastern Macedonia and Thrace. The field of research in the city of Xanthi is an attempt to reconstruct aspects of the lived experience and the sense of living in this area in the conditions of the multilevel and multifaceted crisis of that period. Through the approach of the upheavals brought about by the war and the occupation in the daily life of the people, the practices adopted for survival will be investigated and it will be examined how they were influenced by the social boundaries, cultural environments and imperative daily needs of this period. In addition, since the field of research is an area with a strong multinational character, special emphasis will be given to the investigation of international relations, mainly in the way in which they are influenced and reshaped within the new framework set by the Bulgarian occupation in the region.
DOI: 10.17903/fk2/488rfg
title: Η εμπειρία του πολέμου και της κατοχής στα αστικά κέντρα της βουλγαρικής ζώνης. Η περίπτωση της Ξάνθης

description: Στόχος της έρευνας είναι η διερεύνηση του τρόπου με τον οποίο ο πόλεμος και η συνακόλουθη κατοχή επηρέασαν την καθημερινότητα των κατοίκων στα αστικά κέντρα της Ανατολικής Μακεδονίας και της Θράκης. Με πεδίο έρευνας την πόλη της Ξάνθης γίνεται προσπάθεια να ανασυσταθούν όψεις της βιωμένης εμπειρίας και της αίσθησης του να ζει κανείς σε αυτή την περιοχή μέσα στις συνθήκες της πολυεπίπεδης και πολύπλευρης κρίσης εκείνης της περιόδου. Μέσα από την προσέγγιση των ανατροπών που επέφερε ο πόλεμος και η κατοχή στην καθημερινότητα των ανθρώπων θα διερευνηθούν οι πρακτικές που υιοθετήθηκαν για την επιβίωση και θα εξεταστεί το πως αυτές επηρεάστηκαν από τις κοινωνικές οριοθετήσεις, τα πολιτισμικά περιβάλλοντα και τις επιτακτικές καθημερινές ανάγκες αυτής της περιόδου. Επιπλέον μιας και το πεδίο της έρευνας είναι μια περιοχή με έντονα πολυεθνοτικό χαρακτήρα ιδιαίτερη βαρύτητα θα δοθεί στη διερεύνηση των διεθνοτικών σχέσεων, κυρίως στον τρόπο με τον οποίο αυτές επηρεάζονται και αναδιαμορφώνονται μέσα στο νέο πλαίσιο που θέτει η βουλγαρική κατοχή στην περιοχή.
DOI: 10.6084/m9.figshare.16619773.v15
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.6084/m9.figshare.16619773.v16
title: Data from "Notch-dependent and -independent transcription are modulated by tissue movements at gastrulation"

description: Data from "Levels of Notch-regulated transcription are modulated by tissue movements at gastrulation":<br>- raw MS2 Live imaging movies: 124 '.lif' files captured in a Leica SP8 confocal. Each is a 1-2h movie of a developing fly embryo in the genetic condition described in the file name. The metadata file contains the information linking each movie with parameters used for image analysis and identifier of the genetic condition ("nickname" column).<br>- data obtained from image analysis: '.mat' files obtained from MATLAB after image analysis for each movie. README contains information of the data structure and all variables stored in each.<br>- numerical data used for figures: text files containing data points used in all figures in the paper. "NumericalData.txt" contains the information about each plot, axes, figure where it's used and name of the file containing the numerical data.
DOI: 10.21227/322a-hw53
title: Sensory Dataset Collected For Human Position Traceability

description:  This dataset contains the data of three different positions of persons. The main focus of this dataset is on three positions those are Sit, Stand and Sleep. This dataset is collected by using a 3-axis accelerometer sensor value using the Inertial Measurement Unit (IMU) (MPU-9250) Sensor. We collected this data by positioning this instrument on the arm of the person. This dataset has great potential in the near future as the doctors can use it to see whether their patients are taking proper rest or not, and parents can also use it to see whether their child is taking proper rest or not.
DOI: 10.6084/m9.figshare.12601177
title: More than half of persons with lower limb amputation suffer from chronic back pain or residual limb pain: a systematic review with meta-analysis

description: The aim of this study is to systematically review and critically assess the methodological quality of literature regarding prevalence, characteristics and factors influencing pain, other than phantom limb pain (PLP) in persons with lower limb amputation (LLA). A systematic review was performed (PROSPERO CRD42019138018). Literature was searched using PubMed, EMBASE, PsycINFO, and PEDro. Studies were included if describing pain other than PLP at least three months after amputation. For residual limb pain (RLP) and back pain, a meta-regression was performed. Fifty-one studies were included in which predominantly young males with a unilateral traumatic amputation using a prosthesis were investigated. Pooled prevalence of RLP was 0.51 (95% CI 0.40–0.62) with a positive association with presence of back pain (<i>p</i> = 0.044) in the univariate meta-regression. Pooled prevalence of back pain was 0.55 (95% CI 0.45–0.64), with a positive association of time since amputation (<i>p</i> p = 0.050). Back pain and RLP are common after LLA. The prevalence of back pain was positively associated with the presence of RLP, and vice versa. Future studies should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference.Implications for RehabilitationBoth back pain and residual limb pain occur in more than 50% of persons with lower limb amputation (LLA), and both pain types are positively associated.Clinicians should be aware that chronic pain is common after LLA and can have a significant impact on the functioning of persons with LLA.Future research on this topic should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference. Both back pain and residual limb pain occur in more than 50% of persons with lower limb amputation (LLA), and both pain types are positively associated. Clinicians should be aware that chronic pain is common after LLA and can have a significant impact on the functioning of persons with LLA. Future research on this topic should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference.
DOI: 10.6084/m9.figshare.12601177.v1
title: More than half of persons with lower limb amputation suffer from chronic back pain or residual limb pain: a systematic review with meta-analysis

description: The aim of this study is to systematically review and critically assess the methodological quality of literature regarding prevalence, characteristics and factors influencing pain, other than phantom limb pain (PLP) in persons with lower limb amputation (LLA). A systematic review was performed (PROSPERO CRD42019138018). Literature was searched using PubMed, EMBASE, PsycINFO, and PEDro. Studies were included if describing pain other than PLP at least three months after amputation. For residual limb pain (RLP) and back pain, a meta-regression was performed. Fifty-one studies were included in which predominantly young males with a unilateral traumatic amputation using a prosthesis were investigated. Pooled prevalence of RLP was 0.51 (95% CI 0.40–0.62) with a positive association with presence of back pain (<i>p</i> = 0.044) in the univariate meta-regression. Pooled prevalence of back pain was 0.55 (95% CI 0.45–0.64), with a positive association of time since amputation (<i>p</i> p = 0.050). Back pain and RLP are common after LLA. The prevalence of back pain was positively associated with the presence of RLP, and vice versa. Future studies should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference.Implications for RehabilitationBoth back pain and residual limb pain occur in more than 50% of persons with lower limb amputation (LLA), and both pain types are positively associated.Clinicians should be aware that chronic pain is common after LLA and can have a significant impact on the functioning of persons with LLA.Future research on this topic should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference. Both back pain and residual limb pain occur in more than 50% of persons with lower limb amputation (LLA), and both pain types are positively associated. Clinicians should be aware that chronic pain is common after LLA and can have a significant impact on the functioning of persons with LLA. Future research on this topic should give more attention to other chronic pain types, to persons with a diabetic or vascular cause of amputation, and to pain-related interference.