cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16624397.v1
title: Global Proximity Interactome of the Human Macroautophagy Pathway

description: Macroautophagy is a highly conserved eukaryotic cellular pathway involving the engulfment of macromolecules, organelles, and invading microbes by a double-membrane compartment and subsequent lysosomal degradation. The mechanisms that regulate macroautophagy, and the interaction of its components with other cellular pathways, have remained unclear. Here, we performed proximity-dependent biotin identification (BioID) on 39 core human macroautophagy proteins, identifying over 700 unique high confidence proximity interactors with new putative connections between macroautophagic and essential cellular processes. Of note, we identify members of the OSBPL (oxysterol binding protein like) family as Atg8-family protein interactors. We subsequently conducted comprehensive screens of the OSBPL family for LC3B-binding and roles in xenophagy and aggrephagy. OSBPL7 and OSBPL11 emerged as novel lipid transfer proteins required for macroautophagy of selective cargo. Altogether, our proximity interaction map provides a valuable resource for the study of autophagy and highlights the critical role of membrane contact site proteins in the pathway. BioID: proximity-dependent biotin identification; GO: gene ontology; OSBPL: oxysterol binding protein like; VAPA: VAMP associated protein A; VAPB: VAMP associated protein B and C
DOI: 10.14473/csda/qnu3eg
title: Invisible language 2019: A sociological view on intra- and interspecies intuitive communication

description: This piece of reserach investigates the extent of validity, unpredictability and detail of the information that animal communicators, as they are known, are able to intuitively receive or produce and record in written form about a particular animal based on the feelings evoked by its photographic image. The methodology is grounded in social science (in particular, the method of content analysis of written documents) and focuses on the analysis of meaning. A comparison of 8,660 semantic analytical units (pieces of information) obtained from 224 recordings from four groups - advanced communicators, beginners in intuitive communication, the laypersons, and veterinary experts - reveals a high proportion of valid, unpredictable, and specific information recorded by advanced communicators through intuitive procedures. The validity of each analytical unit was measured by means of evaluation carried out by an animal´s owner. The coding of unpredictability of each valid piece of information was based on triangulation of opinions and recordings of three independent veterinary experts. The degree of detail was measured by coders. The reliability of all the three variables was tested with Holsti coefficient, which varied from 0.82 to 1. The correlation between respondent status (i.e. belonging to a group) and the nature of the information (i.e. the degree of validity, unpredictability, and detail) varies from 0.401 to 0.689 (Eta coefficient), depending on the use of different filters. Further, the qualitative analysis of the semantic character of valid, unpredictable and detailed information from animal communicators has unearthed its "puzzling" and discontinuous character. There is also diversity of the types of valid information between individual communicators. In sum, we have data supporting the idea that some people systematically employing intuitive processes are capable of achieving highly valid results with relative frequency, but we lack an unequivocal theoretical explanation of the phenomenon, which is a challenge for further research.
DOI: 10.14473/csda/qnu3eg/q3xdcn
title: 2_primary data_the most valid records N=62.tab

description: Most valid records
DOI: 10.6084/m9.figshare.6742955
title: Additional file 7: of Transcriptome analysis of alternative splicing in peanut (Arachis hypogaea L.)

description: Table S7. Fatty acid related genes. (XLSX 250 kb)
DOI: 10.6084/m9.figshare.7186997
title: OPERATIONAL DESIGN AND IMPROVEMENT OF CONVENTIONAL BATCH DISTILLATION AND MIDDLE-VESSEL BATCH DISTILLATION

description: Abstract Conventional batch distillation and middle-vessel batch distillation were studied for the separation of the ternary system of cyclohexane/n-heptane/toluene, which has low relative volatilities. The modified variable and constant reflux operations were applied in the conventional batch distillation. Two control structures were used: one of which was referred to as the composition control structure with a modified level-set point, and the other was referred to as the flowrate-limiting control structure. Thus, the middle-vessel batch distillation was able to simultaneously separate the components of the ternary mixture. Comparing the two control structures showed that the flowrate-limiting control structure was better than the composition control structure with a modified level-set point in terms of their applicability. Disturbances were introduced to assess the controllability of the flowrate-limiting control structure. The dynamic responses demonstrated that the control structure performed well. The results showed that the modified conventional batch distillation and middle-vessel batch distillation increased the purity of the separated components compared to previous studies.
DOI: 10.6084/m9.figshare.7186997.v1
title: OPERATIONAL DESIGN AND IMPROVEMENT OF CONVENTIONAL BATCH DISTILLATION AND MIDDLE-VESSEL BATCH DISTILLATION

description: Abstract Conventional batch distillation and middle-vessel batch distillation were studied for the separation of the ternary system of cyclohexane/n-heptane/toluene, which has low relative volatilities. The modified variable and constant reflux operations were applied in the conventional batch distillation. Two control structures were used: one of which was referred to as the composition control structure with a modified level-set point, and the other was referred to as the flowrate-limiting control structure. Thus, the middle-vessel batch distillation was able to simultaneously separate the components of the ternary mixture. Comparing the two control structures showed that the flowrate-limiting control structure was better than the composition control structure with a modified level-set point in terms of their applicability. Disturbances were introduced to assess the controllability of the flowrate-limiting control structure. The dynamic responses demonstrated that the control structure performed well. The results showed that the modified conventional batch distillation and middle-vessel batch distillation increased the purity of the separated components compared to previous studies.
DOI: 10.6084/m9.figshare.8243270.v3
title: BIVAS: A Scalable Bayesian Method for Bi-Level Variable Selection With Applications

description: In this article, we consider a Bayesian bi-level variable selection problem in high-dimensional regressions. In many practical situations, it is natural to assign group membership to each predictor. Examples include that genetic variants can be grouped at the gene level and a covariate from different tasks naturally forms a group. Thus, it is of interest to select important groups as well as important members from those groups. The existing Markov chain Monte Carlo methods are often computationally intensive and not scalable to large datasets. To address this problem, we consider variational inference for bi-level variable selection. In contrast to the commonly used mean-field approximation, we propose a hierarchical factorization to approximate the posterior distribution, by using the structure of bi-level variable selection. Moreover, we develop a computationally efficient and fully parallelizable algorithm based on this variational approximation. We further extend the developed method to model datasets from multitask learning. The comprehensive numerical results from both simulation studies and real data analysis demonstrate the advantages of BIVAS for variable selection, parameter estimation, and computational efficiency over existing methods. The method is implemented in R package “bivas” available at https://github.com/mxcai/bivas. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.16624397
title: Global Proximity Interactome of the Human Macroautophagy Pathway

description: Macroautophagy is a highly conserved eukaryotic cellular pathway involving the engulfment of macromolecules, organelles, and invading microbes by a double-membrane compartment and subsequent lysosomal degradation. The mechanisms that regulate macroautophagy, and the interaction of its components with other cellular pathways, have remained unclear. Here, we performed proximity-dependent biotin identification (BioID) on 39 core human macroautophagy proteins, identifying over 700 unique high confidence proximity interactors with new putative connections between macroautophagic and essential cellular processes. Of note, we identify members of the OSBPL (oxysterol binding protein like) family as Atg8-family protein interactors. We subsequently conducted comprehensive screens of the OSBPL family for LC3B-binding and roles in xenophagy and aggrephagy. OSBPL7 and OSBPL11 emerged as novel lipid transfer proteins required for macroautophagy of selective cargo. Altogether, our proximity interaction map provides a valuable resource for the study of autophagy and highlights the critical role of membrane contact site proteins in the pathway. BioID: proximity-dependent biotin identification; GO: gene ontology; OSBPL: oxysterol binding protein like; VAPA: VAMP associated protein A; VAPB: VAMP associated protein B and C
DOI: 10.6084/m9.figshare.14524470.v1
title: Additional file 2 of Colonization with multidrug-resistant Enterobacteriaceae among infants: an observational study in southern Sri Lanka

description: Additional file 2: Table S8. Antimicrobial resistance prediction of E. coli genomes included in this study, as determined by AMRfinder.
DOI: 10.6084/m9.figshare.6663248.v1
title: MOESM1 of Similarities and differences in gut microbiome composition correlate with dietary patterns of Indian and Chinese adults

description: Additional file 1: Table S1. Sample information on age, gender and ethnicity.
DOI: 10.6084/m9.figshare.14526480
title: Additional file 5 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 5 Tissue expression patterns of HvHAKs.
DOI: 10.6084/m9.figshare.14526477
title: Additional file 4 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 4. Orthologous gene pairs in synteny analysis.
DOI: 10.6084/m9.figshare.14526480.v1
title: Additional file 5 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 5 Tissue expression patterns of HvHAKs.
DOI: 10.6084/m9.figshare.14526486
title: Additional file 7 of Identification and characterization of HAK/KUP/KT potassium transporter gene family in barley and their expression under abiotic stress

description: Additional file 7. Primers for qRT-PCR.
DOI: 10.6084/m9.figshare.21340352.v1
title: Additional file 3 of The effectiveness of case management for cancer patients: an umbrella review

description: Additional file 3.
DOI: 10.15468/dl.wa5m5t
title: Occurrence Download

description: A dataset containing 1038 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudo-fumaria lutea"
 ]
}

 The dataset includes 1038 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014954-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8033928
title: CSV Dataset Files and JSON OpenRefine Recipes for Alignment of the Schoenberg Dataset of Manuscripts (SDBM) Name Authority with Wikidata

description: Dataset CSVs and JSON recipe files for OpenRefine for a project to align Name Authority records in the Schoenberg Dataset of Manuscripts (SDBM) with Wikidata Items
description: This research was supported by the Institute of Museum and Library Services (IMLS), LB21 LEADING project: RE-246450-OLS-20
DOI: 10.5281/zenodo.8033927
title: CSV Dataset Files and JSON OpenRefine Recipes for Alignment of the Schoenberg Dataset of Manuscripts (SDBM) Name Authority with Wikidata

description: Dataset CSVs and JSON recipe files for OpenRefine for a project to align Name Authority records in the Schoenberg Dataset of Manuscripts (SDBM) with Wikidata Items
description: This research was supported by the Institute of Museum and Library Services (IMLS), LB21 LEADING project: RE-246450-OLS-20
DOI: 10.5281/zenodo.4749297
title: The Impact of Planetary Rotation Rate on the Reflectance and Thermal Emission Spectrum of Terrestrial Exoplanets Around Sun-like Stars

description: Rundecks to initiate our ROCKE3D GCM simulations. Rundecks are the files that specify the initial and boundary conditions of each simulation and what model functions are enabled. Users are allowed to modify the files to create and present their own simulations. The ROCKE3D source code can be found at: https://simplex.giss.nasa.gov/gcm/ROCKE-3D/. Also output from each simulation in NetCDF format.
DOI: 10.5281/zenodo.3727182
title: The Impact of Planetary Rotation Rate on the Reflectance and Thermal Emission Spectrum of Terrestrial Exoplanets Around Sun-like Stars

description: Rundecks to initiate our ROCKE3D GCM simulations. Rundecks are the files that specify the initial and boundary conditions of each simulation and what model functions are enabled. Users are allowed to modify the files to create and present their own simulations. The ROCKE3D source code can be found at: https://simplex.giss.nasa.gov/gcm/ROCKE-3D/. Also output from each simulation in NetCDF format.
DOI: 10.5281/zenodo.8033912
title: Results from participants in interlaboratory analysis of a candidate of reference material for hydrogen cryoadsorption

description: Isothermal data from participants in an interlaboratory analysis of adsorption at 77 K of a candidate reference material for hydrogen cryoadsorption in the framework of the MefHySto project (Metrology for advance hydrogen storage solutions).
DOI: 10.5281/zenodo.8033911
title: Results from participants in interlaboratory analysis of a candidate of reference material for hydrogen cryoadsorption

description: Isothermal data from participants in an interlaboratory analysis of adsorption at 77 K of a candidate reference material for hydrogen cryoadsorption in the framework of the MefHySto project (Metrology for advance hydrogen storage solutions).
DOI: 10.17632/g76gstcyzh.1
title: Supplementary data of "Regulatory mechanism of plnC of Lactiplantibacillus plantarum on Plantaricin biosynthesis"

description: The Supplementary charts and the DEPs information of proteomics.
DOI: 10.6084/m9.figshare.23509380
title: Fase 1 San Sebastián: Datos películas sección oficial hasta 2019

description: Festival de San Sebastián. Películas de Sección Oficial 1953-2019. Incluye: Título original y traducción, Director, Países productores, Idiomas, Notas, Taquilla, Audiencia (En audiencia, datos de Ministerio).
DOI: 10.6084/m9.figshare.23509380.v1
title: Fase 1 San Sebastián: Datos películas sección oficial hasta 2019

description: Festival de San Sebastián. Películas de Sección Oficial 1953-2019. Incluye: Título original y traducción, Director, Países productores, Idiomas, Notas, Taquilla, Audiencia (En audiencia, datos de Ministerio).
DOI: 10.17632/5p8tzvw9mh.1
title: Fasciola hepatica Random Forest

description: Data for Random Forest-based prediction of Fasciola hepatica
DOI: 10.17632/r353ncfn73.1
title: MCS Projects Database 2023

description: A global list of active - and recently ended - marine citizen science (MCS) projects. The projects have been organised alphabetically by category and sub-category.
DOI: 10.48324/dandi.000363/0.230613.1608
title: Mesoscale Activity Map Dataset

description: Mesoscale Activity Map Project. Map behavior-related activity in a multi-regional network supporting memory-guided movement in mice. Anatomy-guided recordings from multiple connected brain regions, from anterior lateral motor cortex to the medulla.

Supported by Simons Collaboration on the Global Brain, Janelia Visitor Project, NIH U19NS123714-01, R01NS112312, R01EB028171, McKnight foundation
DOI: 10.7284/151395
title: Multiplexed data collected during research cruise HRS2209 using a UDel UDEL SMS instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/151393
title: GNSS (Global Navigation Satellite System) data collected during research cruise HRS2209 using a Furuno GP-37 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/151394
title: INS (Inertial Navigation System) data collected during research cruise HRS2209 using a Applanix POS/MV-320 V5 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/151397
title: Singlebeam Echosounder data collected during research cruise HRS2209 using a Knudsen 3260 instrument system onboard the platform RV Hugh R. Sharp

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.18434/mds2-2779
title: Data to accompany the paper entitled "Vapor and Liquid (p-rho-T-x) Measurements of Binary Refrigerant Blends Containing R-32, R-152a, R-227ea, R-1234yf, and R-1234ze(E)"
DOI: 10.6084/m9.figshare.22678789
title: Supplementary Data for <strong>Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes.</strong> Eme, Tamarit, Caceres,... and Ettema. <em>Nature </em>2023.<strong> </strong> https://www.nature.com/articles/s41586-023-06186-2

description: <strong>Supplementary Figures</strong>: High-resolution files. <br> <strong>Proteomes: </strong>Asgard archaeal MAGs predicted proteomes. <br> <strong>OrthoClusters</strong>: orthologous groups used for ALE inferences. <br> <strong>Phylogenomics_datasets: </strong>Individual and concatenated alignments for the A64 and A175 taxon samplings; ML and Bayesian phylogenetic trees.
DOI: 10.6084/m9.figshare.22678789.v1
title: Supplementary Data for Inference and reconstruction of the heimdallarchaeial ancestry of eukaryotes

description: <strong>Supplementary Figures</strong>: High-resolution files <br> <strong>Proteomes: </strong>Asgard archaeal MAGs predicted proteomes. <br> <strong>OrthoClusters</strong>: orthologous groups used for ALE inferences <br> <strong>Phylogenomics_datasets: </strong>Individual and concatenated alignments for the A64 and A175 taxon samplings; ML and Bayesian phylogenetic trees.
DOI: 10.5281/zenodo.8034023
title: Data for Lindquist et al., Metasomatism and slow slip: talc production along the flat subduction plate interface beneath Mexico (Guerrero)

description: A compilation of data supporting our 2023 G-Cubed manuscript submission "Metasomatism and slow slip: talc production along the flat subduction plate interface beneath Mexico (Guerrero)," including<br> (1) and Excel file containing bulk compositions and phase solution models used in our Perple_X modeling (2) text files of all the output Perple_X data that were used for calculations of results presented in the manuscript, including mineral modes, densities, and silica contents
DOI: 10.6084/m9.figshare.23296271
title: <strong>Coronel-Monje et al., 2023.</strong>

description: Raw data obtained from bibliometric analysis on Peruvian research contribution to COVID-19 pandemic and PRISMA checklist employed in the systematic review.
DOI: 10.6084/m9.figshare.23509518
title: Fase 2: San Sebastián, países sección a competición

description: PDFs intermedios para analisis con MAXQDA y XLS resumen de países productores de las películas a competición en San Sebastián durante su historia, incluyendo diferenciación con Conchas de oro.
DOI: 10.6084/m9.figshare.23509518.v1
title: Fase 2: San Sebastián, países sección a competición

description: PDFs intermedios para analisis con MAXQDA y XLS resumen de países productores de las películas a competición en San Sebastián durante su historia, incluyendo diferenciación con Conchas de oro.
DOI: 10.57969/s97p41
title: Lagrangian Drifter Laboratory at Scripps Institution of Oceanography 2022 CALYPSO DWS Drifter Data

description: The data of all the Directional-Wave-Spectra (DWS; https://gdp.ucsd.edu/ldl/dwsd/) drifters deployed during the CALYPSO22 cruise in the Balearic Sea were processed to give positions (latitude and longitude), zonal and meridional velocities, and sea surface temperature (SST) records at uniform and common times (no processing of wave data). The processing was done on the data between the deployment times and 2 Feb. 2023. The CALYPSO22 raw drifter data were edited to exclude data before deployment and to remove obvious outliers using the method described in Menna et al. (2017). If a drifter was recovered and redeployed, the data were separated into two files. Even though the nominal sampling period was as small as 5 min., gaps without data for longer periods occurred in the time series. In case of temporary stranding or pick-up and for gaps larger than ~1 day the time series were split into separate files. For some drifters with transmission problems and numerous data gaps, the records were simply cut at the first occurrence of a gap. The edited data were linearly interpolated at 5-min. intervals. Velocities were estimated by central finite differences of the interpolated positions. Finally, the data were low-pass filtered with a Hamming window of 30 and 60 minutes.
description: Mahadevan, A., A. Pascual, D. L. Rudnick, S. Ruiz, J. Tintoré, and E. D’Asaro, 2020: Coherent Pathways for Vertical Transport from the Surface Ocean to Interior. Bull. Amer. Meteor. Soc., 101, E1996–E2004, https://doi.org/10.1175/BAMS-D-19-0305.1.
description: Centurioni, Luca, Lance Braasch, Enrico Di Lauro, Pasquale Contestabile, Francesco De Leo, Raffaella Casotti, Leopoldo Franco, and Diego Vicinanza. 2017. “A NEW STRATEGIC WAVE MEASUREMENT STATION OFF NAPLES PORT MAIN BREAKWATER”. Coastal Engineering Proceedings 1 (35), waves.36. https://doi.org/10.9753/icce.v35.waves.36.
description: Menna, M., R. Gerin, A. Bussani and P.-M. Poulain, 2017: The OGS Mediterranean drifter database: 1986-2016. OGS Tech. Rep. 2017/92 OCE 28 MAOS, Trieste, Italy, 34 pp. http://argo.ogs.it /pub/Menna%20et%20al%202017_Drifter_database.pdf
DOI: 10.5281/zenodo.8034067
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Samuel Garman, http://www.wikidata.org/entity/Q383675. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q383675
DOI: 10.5281/zenodo.8034066
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Samuel Garman, http://www.wikidata.org/entity/Q383675. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q383675
DOI: 10.5281/zenodo.8034069
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Aage Aagaard, http://www.wikidata.org/entity/Q112968153. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q112968153