cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27144636.v1
title: Supplementary Material for: Exploring the Impact of Sarcopenia on Mortality in Breast Cancer Patients: A Comprehensive Systematic Review and Meta-Analysis

description: Background: This study assesses the frequency of sarcopenia in patients with breast cancer (BC) and its association with mortality rates. 
Methods: An all-encompassing search across (PubMed, Scopus, Web of Science, and CINAHL) was done, to identify studies, published until August 2023, that report data on sarcopenia and mortality in BC patients. A meta-analysis was then done using a random-effects model.
Results: Out of 989 initially identified potential studies, 19 met inclusion criteria. Analysis of 15 studies showed a rate of sarcopenia of 38% (95% CI 29-48%), with moderate heterogeneity (I2 = 25.8%). Sarcopenia was linked to increased mortality risk in BC patients across 16 studies (HR: 1.77, CI: 1.35 – 2.32, p = &lt;0.001) with both shorter and longer follow-up periods. Similarly, mortality risks were significantly higher in metastatic (HR: 1.52, CI: 1.14 – 2.03, p = 0.004) and non-metastatic (HR: 2.55, CI: 1.66 – 3.93, p &lt; 0.001) BC patients with sarcopenia.
Conclusion: Our analysis demonstrates a substantial prevalence of sarcopenia in BC patients. Importantly, sarcopenia was significantly linked to elevated risk of mortality in this population. Subgroup analyses, stratified by follow-up periods and disease stage, consistently reveal increased mortality risks associated with sarcopenia, underscoring its clinical relevance in both short- and long-term patient outcomes. Our findings further strengthen the need to recognize and address sarcopenia as a critical factor in BC management and prognosis.
DOI: 10.6084/m9.figshare.29117639.v1
title: Unravelling ecosystem function responses to grazing intensity through UAV-based hyperspectral analysis

description: Datasets of functional trait composition, biomass and grazing intensity for paper"Unravelling Ecosystem Function Responses to Grazing Intensity through UAV-based Hyperspectral Analysis"
DOI: 10.17632/kdnv5v9yp3
title: An example of implanting l-i AIR model into Excel

description: The detailed procedure has been described in the paper “A Simple, SIR-like but Individual-Based Epidemic Model: Application in Comparison of COVID-19 in New York City and Wuhan”.
DOI: 10.6084/m9.figshare.1444434.v1
title: Lacazia loboi read qualities

description: Qual file of putative Lacazia loboi reads
DOI: 10.6084/m9.figshare.20765822.v1
title: Systems biology approach delineates critical pathways associated with disease progression in rheumatoid arthritis

description: Rheumatoid Arthritis (RA) is a chronic systemic autoimmune disease leading to inflammation, cartilage cell death, synoviocyte proliferation, and increased and impaired differentiation of osteoclasts and osteoblasts leading to joint erosions and deformities. Transcriptomics, proteomics, and metabolomics datasets were analyzed to identify the critical pathways that drive the RA pathophysiology. Single nucleotide polymorphisms (SNPs) associated with RA were analyzed for the functional implications, clinical outcomes, and blood parameters later validated by literature. SNPs associated with RA were grouped into pathways that drive the immune response and cytokine production. Further gene set enrichment analysis (GSEA) was performed on gene expression omnibus (GEO) data sets of peripheral blood mononuclear cells (PBMCs), synovial macrophages, and synovial biopsies from RA patients showed enrichment of Th1, Th2, Th17 differentiation, viral and bacterial infections, metabolic signalling and immunological pathways with potential implications for RA. The proteomics data analysis presented pathways with genes involved in immunological signaling and metabolic pathways, including vitamin B12 and folate metabolism. Metabolomics datasets analysis showed significant pathways like amino-acyl tRNA biosynthesis, metabolism of amino acids (arginine, alanine aspartate, glutamate, glutamine, phenylalanine, and tryptophan), and nucleotide metabolism. Furthermore, our commonality analysis of multi-omics datasets identified common pathways with potential implications for joint remodeling in RA. Disease-modifying anti-rheumatic drugs (DMARDs) and biologics treatments were found to modulate many of the pathways that were deregulated in RA. Overall, our analysis identified molecular signatures associated with the observed symptoms, joint erosions, potential biomarkers, and therapeutic targets in RA. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.26957429.v1
title: Computer code for reproducing results from Environmental Complexity and Regularity Shape the Evolution of Cognition

description: Turner_et_al_2024_complexity_cognitive_evolution_ESM2.nb
DOI: 10.6084/m9.figshare.28926227.v1
title: Supplementary Material for: Association between ectopic inner foveal layer on optical coherence tomography and postoperative quantitative metamorphopsia in patients undergoing epiretinal membrane surgery.

description: Purpose: Epiretinal membrane (ERM) is a condition that can lead to visual impairment and meta-morphopsia. This study aimed to examine the correlation between metamorphopsia and foveal mi-crostructure before and after macular surgery in a cohort of patients with advanced ERM.

Methods: The severity of metamorphopsia was quantified using M-CHARTS, and foveal micro-structure was evaluated via two optical coherence tomography (OCT) measures: central foveal thickness (CFT) and ectopic inner foveal layer (EIFL). Assessments were performed pre- and post-surgery with an average follow-up of one year. Correlations between morphological and functional parameters pre- and post-surgery were explored by means of regression analysis. 

Results: 60 eyes of 57 patients diagnosed with advanced ERM and surgically treated were included in the study. Our findings showed a significant correlation between postoperative metamorphopsia and both pre- (R²=0.431) and postoperative (R²=0.300) EIFL thickness. Disparities were observed in metamorphopsia scores between patients with ERM stages 3 and 4, both pre- (0.46 ± 0.31 and 0.84 ± 0.32, respectively, P&lt;0.01) and post-surgery (0.18 ± 0.21 and 0.46 ± 0.28, respectively, P&lt;0.01). Postoperative EIFL thickness was the only variable significantly associated with postoper-ative metamorphopsia scores according to multiple regression analysis.

Conclusion: EIFL thickness emerges as a critical determinant of postoperative metamorphopsia severity, underscoring its importance in predicting functional outcomes after ERM surgery. Although surgery improved metamorphopsia across stages, patients with more advanced ERM experienced less favorable outcomes, stressing the importance of a timely surgical intervention.
DOI: 10.17632/3fcrrdjjvk
title: Main engine journal bearings vibrations dataset of automobile internal combustion engine under diverse climatic and varying operating conditions

description: The dataset includes vibration signatures from both healthy and faulty main engine journal bearings, captured with a tri-axial accelerometer mounted on the bearings' housing of an internal combustion engine. The engine was exposed to various climatic and operational conditions following MIL-STD-810G and was tested in a state-of-the-art climatic and vibration chamber to simulate real-world scenarios. The dataset comprises more than 500 files, with healthy and faulty bearings, each recorded under a range of climatic and operational conditions. This dataset is a valuable and reliable benchmark for researchers and practitioners to validate their diagnostic algorithms and models against real engine conditions as no such dataset is publicly available..
DOI: 10.17632/kk5xnrx3x3
title: Data and Code for "Geospatial Impact Evaluation of an Agricultural Intensification Program in Niger"

description: This data and code accompanies the journal article: "Geospatial Impact Evaluation of an Agricultural Intensification Program in Niger". It outputs the synthetic difference-in-difference (SDID) impact estimates and all figures related to the analysis of the surface irrigation and land rehabilitation interventions within the Agricultural Production Intensification for Food Security Project (PIPA/SA) in Niger.
DOI: 10.17637/rh.27020611.v3
title: Accompanying data for "Chiral superfluid helium-3 in the quasi-two-dimensional limit"

description: This dataset includes the measured values of the superfluid transition temperature and the energy gap of the A phase of superfluid helium-3 confined in a 80 nm high slab-shaped cavity with specular quasiparticle scattering boundary conditions. Also corresponding calculations of the suppression of the superfluid transition temperature with almost fully specular boundaries are included. The article detailing the findings of this study, and the used methods and techniques, has been published in <i>Physical Review Letters</i> <b>134,</b> 136001 (2025) available at https://doi.org/10.1103/PhysRevLett.134.136001.<b>Data from the experiments</b>'80nm_cavity_Tc_suppression_specular.dat' lists the measured superfluid transition temperatures in the confined cavity relative to the bulk-marker transition temperature corresponding to specular boundary condition and various pressures, i.e., various values of effective cavity height. These values are included in Figure 1 in the article.'80nm_cavity_A_phase_gap_specular_[pressure]bar.dat' files give the measured temperature dependence of the energy gap of superfluid A phase of helium-3 corresponding to specular boundary condition and various pressures. Values of the gap are based on the measured NMR frequency shift in the superfluid state as described in the article. Four pressures are included in Figure 3 in the article. All five pressures are shown in Supplementary Figure S3.'80nm_cavity_initial_slopes_specular.dat' gives the measured initial slopes of the superfluid frequency shift versus temperature determined within different ranges below the measured superfluid transition temperature in the cavity for specular boundary conditions and various pressures. These values are needed in conversion between the frequency shift and the energy gap and are plotted in Figure 2(b) and Supplementary Figure S2 in the article.The values of superfluid transition temperature and the initial slopes measured using 192 nm high cavity are shown in couple of figures in the manuscript. Those values come from the earlier work, data of which can be found here: https://doi.org/10.17637/rh.12777620.<b>Calculations:</b>'calc_Tc_suppression_S[specularity].dat' show the calculated suppressed superfluid transition temperatures as a function of effective cavity height for two specularities close to being fully specular. The corresponding lines are shown in Figure 1(c) in the manuscript.In all the calculations we have used the quasiclassical weak-coupling approach, as cited in the manuscript.Literature values of bulk (or fully specular) superfluid transition temperature are given by D. S. Greywall in Phys. Rev. B <b>33,</b> 7520 (1986) (https://doi.org/10.1103/PhysRevB.33.7520).Values of the weak-coupling bulk energy gap of <sup>3</sup>He-A can be found, for example, by using E. V. Thuneberg's calculator from https://users.aalto.fi/~thunebe1/theory/qc/bcsgap.html.The values as a function of temperature are also given in https://doi.org/10.17637/rh.12777620.
DOI: 10.21942/uva.26395903.v2
title: Dataset belonging to Siebers et al. (2024) Adolescents' digital nightlife: The comparative effects of day- and nighttime smartphone use on sleep quality

description: The four datasets 'phone', 'game', 'social', and 'video' are the processed datasets that are used as input files for the Mplus models (but then in .csv instead of .dat format). The dataset 'phone' contains all data related to the main analyses of daytime, pre-bedtime and post-bedtime smartphone use. The datasets 'game', 'social', and 'video' represent the data related to the exploratory analyses for game app, social media app, and video player app use, respectively. The dataset 'timeframes' contains information about respondents' bedtime and wake-up time, which is required to calculate the three timeframes (daytime, pre-bedtime, and post-bedtime).------------------The materials used, including the R and Mplus syntaxes (https://osf.io/tpj98/) and the preregistration of the current study (https://osf.io/kxw2h/) can be found on OSF. For more information, please contact the authors via t.siebers@uva.nl or info@project-awesome.nl.
DOI: 10.6084/m9.figshare.1272753.v1
title: introduction of Stack

description: Insertion and deletion of data only occurs at one end either from front or from back of the list.<br>The data cannot be retrieved randomly from any position. But data can be retrieved only from one end.
DOI: 10.6084/m9.figshare.17131529.v1
title: 4 Discriminant Validity

description: Discriminant validity
DOI: 10.6084/m9.figshare.4965011.v1
title: Electrically meaningful power system test case diagrams (Texas A&M Electric Grid Test Cases)

description: These images show simple test system diagrams for three of the test power systems in the Texas A&M "<i>Electric Grid Test Cases</i>" collection (see https://electricgrids.engr.tamu.edu/ and A.B. Birchfield, T. Xu, K.M. Gegner, K.S. Shetye, T.J. Overbye, "Grid Structural Characteristics as Validation Criteria for Synthetic Networks," to appear IEEE Transactions Power Systems)<br><br>The three networks visualized here are "<i>Illinois 200-Bus System: ACTIVSg200</i>", "<i>SouthCarolina 500-Bus System: ACTIVSg500</i>" and "<i>Texas 2000-Bus System: ACTIVSg2k</i>" <br><br>These network diagrams were created by applying the techniques described in:<br>P. Cuffe; A. Keane, "Visualizing the Electrical Structure of Power Systems," in IEEE Systems Journal, 2015<br><br>The "Power Transfer" distance was use to create each diagram (see ibid. Section II. 3) As such, the diagrams are electrically meaningful: loosely speaking, buses drawn in close proximity should be able to transact power with each other with ease.<br><br>Buses have been labelled as space permits, starting with the highest voltage buses first.<br><br>
DOI: 10.17632/7c6pwhj2h6
title: Digital_Payments_2025_Dataset

description: The "Digital Payments 2025 Dataset" is a synthetic dataset representing digital payment transactions across various payment applications in India for the year 2025. It captures monthly transaction data for multiple payment apps, including banks, UPI platforms, and mobile payment services, reflecting the growing adoption of digital payments in India. The dataset was created as part of a college project to simulate realistic transaction patterns for research, education, and analysis in data science, economics, and fintech studies. It includes metrics such as customer transaction counts and values, total transaction counts and values, and temporal data (month and year). The data is synthetic, generated using Python libraries to mimic real-world digital payment trends, and is suitable for academic research, teaching, and exploratory data analysis.
DOI: 10.6084/m9.figshare.24049926.v2
title: Spore Dataset

description: This is the image dataset for the article “A hybrid CNN-Random Forest algorithm for bacterial spore segmentation and classification in TEM images" by Saqib Qamar, Rasmus Öberg, Dmitry Malyshev and Magnus Andersson
DOI: 10.17632/sfxggrf2zn
title: JAAD-D-25-01133 supplementary materials

description: This document includes Supplementary Methods, Supplementary Tables 1-4, and Supplementary Figure 1
DOI: 10.6084/m9.figshare.23743869.v1
title: Gait data from children

description: Dataset of gait with different shoes
DOI: 10.15468/dl.u8wbga
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina silus (Ascanius, 1775)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((34.9038 27.8147,35.2246 28.8496,26.9648 28.8496,26.9648 19.8496,35.9648 19.8496,35.9648 24.4806,35.4928 25.0593,34.4963 26.7709,34.4829 27.231,34.9038 27.8147))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013266-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.11316758.v1
title: MECP2 Rettbase genetic variant data in CSV

description: MECP2 genetic variant data from Rettbase in CSV format.<br>FAIR machine-readable metadata is available at:http://purl.org/biosemantics-lumc/rettbase/fdp<br>
DOI: 10.6084/m9.figshare.28120064.v1
title: Simulation results and validation data of storm surge and wave during Super Typhoon Hato

description: Numerical simulation results for astronomical tide, storm surge, and wave during Super Typhoon Hato under the baseline and sea-level rise scenarios, along with verification data for wind speed, water level, and significant wave height.
DOI: 10.17632/9dyjhbwzyw
title: Data for Wind Profiles and Surface Aerodynamic Parameters of Typhoons over Coastland and Coastal Sea of China

description: This dataset contains all the observational data and the calculated surface aerodynamic parameters in the manuscript 'A Comparative Study on Wind Profiles and Surface Aerodynamic Parameters of Typhoons Over Coastland and Coastal Sea' that has been submitted to Journal of Geophysical Research - Atmospheres. Users can open these data with Origin software developed by OriginLab company.
DOI: 10.17632/fx8srs3r58
title: NGD Dataset

description: Dataset for NGD study including stress perfusion characteristics and clinical outcomes
DOI: 10.17632/yrtyprggf9
title: Simulator Sickness Questionnaire (SSQ) of the Application DTinVR

description: We provide the data of the simulator sickness questionnaire in accordance with Kennedy et al. (1993). 24 participants categorized their condition into 16 symptom categories as none (0), slight (1), moderate (2) or severe (3) after testing the Design Thinking in Virtual Reality application. The mean SSQ total score (TS) was 31.5. Further data and their calculations are provided in the excel file.
DOI: 10.6084/m9.figshare.11378607.v1
title: Count data in UAS images from An experimental approach to evaluate the potential of drones in terrestrial mammal research: a gregarious ungulate as a study model

description: ESM 1: Count data of guanaco adults and offspring recorded by the four independent observers, by image and AGL
DOI: 10.6084/m9.figshare.15181173.v2
title: ECOSTRESS LST images

description: ECOSTRESS LST processed images for Jharia study area. Images were acquired by the satellite during 2019 and 2020. Hook, S., Hulley, G. (2019). <i>ECOSTRESS Land Surface Temperature and Emissivity Daily L2 Global 70 m V001</i> [Data set]. NASA EOSDIS Land Processes DAAC. Accessed 2021-08-17 from https://doi.org/10.5067/ECOSTRESS/ECO2LSTE.001The R script will crop the ECOSTRESS dataset to study area and create raster stack of ECO2LSTE, ECO2CLD files.<br>
DOI: 10.6084/m9.figshare.19721506.v1
title: Supplementary Material for: Vitamin D Receptor/Vitamin D Response Element Directly Modulate <b><i>Nestin</i></b> Transcription to Ameliorate PAN-Induced Podocyte Morphological Changes

description: <b><i>Background:</i></b> The change of podocyte morphology is a pathologic feature of chronic kidney disease. Several studies have suggested that vitamin D plays a role in the protection of podocytes, but the underlying mechanism remains unclear. <b><i>Methods:</i></b> The effects of paricalcitol on podocyte injury were tested in a puromycin aminonucleoside (PAN)-induced rat model and cultured mouse podocytes. Proteinuria, podocyte foot process (FP) effacement, and the expression of nestin and vitamin D receptor (VDR) were evaluated. VDR-siRNA or plasmids containing VDR-shRNA were transfected into podocytes to silence <i>VDR</i> expression. Chromatin immunoprecipitation (ChIP) and luciferase reporter assays were performed to verify the connection between <i>VDR</i> and <i>nestin</i> gene expression. <b><i>Results:</i></b> Paricalcitol significantly alleviated proteinuria and podocyte FP effacement in PAN-induced nephrosis, which was accompanied by increased VDR expression in the glomeruli. Paricalcitol also inhibited PAN-induced nestin overexpression in the glomeruli. In an in vivo study, PAN significantly inhibited VDR protein expression, stimulated nestin protein expression, and resulted in nestin filament derangement in mouse podocytes, while paricalcitol treatment abolished these effects. In contrast, downregulation of VDR resulted in derangement and overexpression of nestin. ChIP assays demonstrated the presence of a vitamin D response element (VDRE) in the <i>nestin</i> promoter, and paricalcitol enhanced the binding of VDR to VDRE. Furthermore, luciferase reporter assays of the <i>nestin</i> promoter fragment showed that paricalcitol effectively repressed nestin reporter gene expression after PAN treatment, and mutation of VDRE abolished this effect. <b><i>Conclusions:</i></b> Paricalcitol directly regulates nestin transcription through the interaction of VDR/VDRE, thereby preventing morphological changes of podocytes in PAN nephropathy.
DOI: 10.6084/m9.figshare.21923175.v1
title: fNIRS Recording of Prefrontal Cortex during Turkish Relative Clause Processing

description: The hemodynamic activity of fourteen subjects was collected via a 22-channel fNIRS system with a sampling rate of 7.8125 Hz while the subjects were performing a relative clause processing task in Turkish. The total stimuli consisted of 24 sentence-and-question pairs. Half of the sentences contained a subject-relative clause, while the other half contained an object-relative clause. The sentences were shown on a screen for 4 seconds, followed by the presentation of a Yes/No question about the sentence for 3 seconds, during which the subjects must respond via key press. The experiment was prepared in Pychopy 3.0.6 and key responses were also collected via Psychopy There was a random inter-stimulus interval within the range of 7-10 seconds. The fNIRS data provided were not preprocessed. The original output of the recording system was '.nirs', but the data were converted, without any preprocessing, into '.SNIRF', which is currently suggested as the standard data format by the fNIRS society. The recording (i.e., raw data) of one subject (Subject #6) was damaged, therefore excluded from the dataset. Furthermore, we provided one '.xlsx' file for each of the following data: response accuracy, reaction time, stimuli condition, and event timestamps. Further explanation of each file can be found In README files.
DOI: 10.6084/m9.figshare.27601491.v1
title: MG1.finally .gff3

description: Annotation on the genome of a male Chanodichthys mongolicus called MG1（Liu， Q. & Li， W. <i>Genbank </i><i>https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_040802255.1</i>）
DOI: 10.6084/m9.figshare.7730594.v1
title: A forgotten disease: pelvic congestion syndrome as a cause of chronic lower abdominal pain.

description: Data from the medical records of the patients with dilated ovarian veins (OV) and the control group without dilated OV, including gynecological examinations available either in electronic medical records or matching paper-based gynecological files accessible within the hospital records. <br>PCS-associated symptoms of interest included chronic or recurrent abdominal, back and flank pain, dyspareunia, ovarian point tenderness on bimanual examination, urological symptoms (dysuria, urinary frequency, urgency, hematuria), and vulvar and lower extremity varicosities.<br>Demographic information was also collected: menopausal status, age, ethnicity, height, body mass index (BMI), blood group, gravidity, parity, birth weights of children, method of contraception, position of uterus (ante- or retroverted), smoking, alcohol consumption and signs of infection as measured in blood tests (CPR, leucocytes).