cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14429795
title: SIRENE Cloud-Based Repository - dataset

description: The cloud-based data repository serves as a centralised platform for easy access to information and resources related to Smart Healthy Age-Friendly Environments (SHAFE). It compiles a diverse range of materials, including projects, initiatives, and scientific articles, gathered by the SIRENE consortium, experts, and ecosystems. Designed as a collaborative tool, stakeholders actively contributed to its content. The repository is accessible to a wide audience, fostering greater awareness and understanding of SHAFE implementation in Europe at https://app.powerbi.com/view?r=eyJrIjoiMjEyMDY1ZjMtNmMzYi00ODRlLWE0ODYtMDE2MmI4ZDgxNThkIiwidCI6IjdjYjFjNzU3LWY1ZDAtNGQ3Ny1iYzg5LWY5OWQ4MTIwZmZlMyIsImMiOjl9.
DOI: 10.5281/zenodo.14429796
title: SIRENE Cloud-Based Repository - dataset

description: The cloud-based data repository serves as a centralised platform for easy access to information and resources related to Smart Healthy Age-Friendly Environments (SHAFE). It compiles a diverse range of materials, including projects, initiatives, and scientific articles, gathered by the SIRENE consortium, experts, and ecosystems. Designed as a collaborative tool, stakeholders actively contributed to its content. The repository is accessible to a wide audience, fostering greater awareness and understanding of SHAFE implementation in Europe at https://app.powerbi.com/view?r=eyJrIjoiMjEyMDY1ZjMtNmMzYi00ODRlLWE0ODYtMDE2MmI4ZDgxNThkIiwidCI6IjdjYjFjNzU3LWY1ZDAtNGQ3Ny1iYzg5LWY5OWQ4MTIwZmZlMyIsImMiOjl9.
DOI: 10.6084/m9.figshare.c.3604550_d20
title: Additional file 17: Table S17. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: Changes of gene expression of the DEGs in the three samples. (XLSX 415 kb)
DOI: 10.6084/m9.figshare.c.3604607_d1
title: Additional file 2: of Species and abundance of ectoparasitic flies (Diptera) in pied flycatcher nests in Fennoscandia

description: Genetic distances between individual sequences. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3604550_d25
title: Additional file 14: Table S14. of Transcriptome, microRNA, and degradome analyses of the gene expression of Paulownia with phytoplamsa

description: Conserved miRNAs of P. tomentosa ath/aly: Arabidopsis; ptc: Populus trichocarp; osa: Oryza sativa; zma: Zea mays; gma: Glycine max;+: 2 mismatches; ++: 1 mismatches; +++: 0 mismatch; -: not exist. (XLS 51.0 kb)
DOI: 10.6084/m9.figshare.c.3604631_d1
title: Additional file 13: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: GeneSCF v1.1 tool, documentation and instructions to run test dataset (case study 1 and 2) used in this study. (GZ 4447 kb)
DOI: 10.6084/m9.figshare.c.3604631_d8
title: Additional file 6: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Pathway enrichment results from GeneSCF for p53 bound genes at 0Â h (Case study 2) predicted by GeneSCF using KEGG as a reference database. (XLS 32 kb)
DOI: 10.6084/m9.figshare.c.3604661_d1
title: Additional file 2: Table S1. of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Overview of study characteristics of included studies. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604655_d2
title: Additional file 3: Table S4. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: Regional sub-population sample sizes by subspecies and cranial view. (XLSX 482Â kb)
DOI: 10.6084/m9.figshare.c.3604664_d1
title: Additional file 1: of Glucosamine sulfate suppresses the expression of matrix metalloproteinase-3 in osteosarcoma cells in vitro

description: Minimal data set underlying our findings. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3604631_d9
title: Additional file 4: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Cancer type enrichment results from GeneSCF for CLL associated differentially expressed genes (Case study 1) predicted using NCG as reference database. (XLS 17 kb)
DOI: 10.15468/dl.dkm97d
title: Occurrence Download

description: A dataset containing 7553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5_1",
 "OccurrenceStatus is Present",
 "PublishingOrg is 493fe050-055d-11d8-b84f-b8a03c50a862",
 "TaxonKey is Araneae"
 ]
}

 The dataset includes 7553 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032683-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604661_d2
title: Additional file 1: of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Appendix. Primary search strategy for MEDLINE. Primary search strategy for PsycINFO. Selection criteria (inclusion & exclusion). (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3604631_d10
title: Additional file 3: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: The list of CLL associated differentially expressed genes used for case study 1 and the list of p53 bound genes in HCT116 cell line treated with DNA-damage-inducing drug at two different time points (0 and 12Â h) used for case study 2. (XLS 273 kb)
DOI: 10.6084/m9.figshare.c.3604661_d3
title: Additional file 3: Table S2. of The effectiveness of interventions targeting the stigma of mental illness at the workplace: a systematic review

description: Effect sizes reported for included studies. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3604631_d11
title: Additional file 12: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: Enrichment analysis results for list-B genes from GeneSCF and DAVID 6.7 using Reactome as a reference database. (XLS 233 kb)
DOI: 10.6084/m9.figshare.c.3604655_d5
title: Additional file 2: Table S3. of Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)

description: MVZ specimen catalog numbers and views represented. (XLSX 495Â kb)
DOI: 10.6084/m9.figshare.c.3604631_d12
title: Additional file 1: of GeneSCF: a real-time based functional enrichment tool with support for multiple organisms

description: The list of organisms supported by GeneSCF for KEGG pathway database. (XLS 542 kb)
DOI: 10.6084/m9.figshare.c.3604679_d1
title: Additional file 14: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Enrichment analyses of NLR-IDs. Summary of hypergeometric tests for each domain present in NLR-IDs in each plant species. (XLSX 84 kb)
DOI: 10.6084/m9.figshare.c.3604679_d2
title: Additional file 16: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Maximum likelihood phylogenetic tree of WRKY transcription factors in fusion with NLRs in all plants together with all other Arabidopsis WRKY proteins. (TXT 4 kb)
DOI: 10.6084/m9.figshare.c.3604679_d8
title: Additional file 1: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Plant datasets used in this study. A table with the description of species, genome builds and databases from where they were retrieved. (XLSX 32 kb)
DOI: 10.6084/m9.figshare.c.3604679_d9
title: Additional file 13: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Cloned T. aestivum and T. urartu fusions. Summary of T. aestivum and T. urartu fusions confirmed by sub-cloning from cDNA. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.c.3604715_d3
title: MOESM2 of Associations between hepcidin and immune response in individuals with hyperbilirubinaemia and severe malaria due to Plasmodium vivax infection

description: Additional file 2. Correlation parameters between the immune biomarkers according to study groups.
DOI: 10.6084/m9.figshare.c.3604709_d4
title: Additional file 4: Table S4. of Temporo-spatial cell-cycle kinetics in HeLa cells irradiated by Ir-192 high dose-rate remote afterloading system (HDR-RALS)

description: Datasets for Fig.Â 9. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3604679_d10
title: Additional file 2: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: NLR and NLR-ID architectures detected in each species. (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3604724_d1
title: Additional file 4: of Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

description: Top transcription factors, as ranked either by 1) differential expression by transforming viral oncogenes, 2) degree in the GMIT network or 3) degree in the PANDA network. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3604724_d2
title: Additional file 5: of Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

description: Lists of enriched GO terms for the direct protein interactors of subsets of driver TFs that are ranked higher using the combined network score than either individual network. Lists correspond to the following conditions: rapamycin, diamide and menadione in yeast, and viral oncogene perturbation in humans. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3604724_d3
title: Additional file 3: of Integrating transcriptional and protein interaction networks to prioritize condition-specific master regulators

description: Top TF drivers of rapamycin response ranked by degree in transcriptional or PPI network. (XLSX 57 kb)
DOI: 10.6084/m9.figshare.c.3604679_d13
title: Additional file 8: of Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens

description: Manual verification of domains predicted by high-throughput scripts with webservers for brassica, tomato, wheat and soybean. (XLSX 22 kb)
DOI: 10.15468/dl.fnq5zx
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pedicularis hallaisanensis Hurus."
 ]
}

 The dataset includes 20 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032684-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604775_d1
title: Additional file 2: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: HRM primer list based on the polymorphic SNPs between YCM334 and Taean. (XLSX 63194Â kb)
DOI: 10.6084/m9.figshare.c.3604757_d6
title: Additional file 5: Table S2. of Optimizing and benchmarking de novo transcriptome sequencing: from library preparation to assembly evaluation

description: Components of the 233 CVGs. (XLSX 132Â kb)
DOI: 10.15468/dl.fh4pyb
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pedicularis mandshurica Maxim."
 ]
}

 The dataset includes 232 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032685-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604775_d2
title: Additional file 6: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: SNPs exerting the nonsynounymous protein changes on NBS-LRR genes. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3604781_d1
title: MOESM2 of A photorespiratory bypass increases plant growth and seed yield in biofuel crop Camelina 
                     sativa

description: Additional file 2. Bypass RNA seq data. Excel file containing RNA sequencing data from DEF2, DEF2+TG1 and WT lines.
DOI: 10.6084/m9.figshare.c.3604775_d3
title: Additional file 4: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: Indel based CAPS primers. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d4
title: Additional file 3: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: CAPS primer set and restriction enzyme for detecting polymorphism on genic regions. (XLSX 6953Â kb)
DOI: 10.15468/dl.2f88aa
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tantilla flavilineata Smith & Burger, 1950"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032686-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604775_d5
title: Additional file 5: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: The list of gene-associated SNPs with type, positions and sequence context. (XLSX 11974Â kb)
DOI: 10.6084/m9.figshare.c.3604775_d6
title: Additional file 7: of Resequencing of Capsicum annuum parental lines (YCM334 and Taean) for the genetic analysis of bacterial wilt resistance

description: CAPS genotyping results in 156 RIL population from a cross of YCM334 and Taean using selected SNP marker (CA04G03400 SNP1, Additional file 1: Figure S1) and BW resistance phenotype scored from 1 (most resistant) to 5 (most susceptible). (XLSX 13Â kb)
DOI: 10.15468/dl.fck8ap
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Adenophora taquetii H.Lév."
 ]
}

 The dataset includes 93 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032687-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3tbbt9
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lupinus obtusilobus A.Heller"
 ]
}

 The dataset includes 394 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032688-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpv7cx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galium verum var. hallasanense M.Kim"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032689-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3604820_d5
title: MOESM8 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 8: Table S5. A listing of commands and parameters as well as other notes regarding how the analysis tools were run can be found in this supplemental Excel document.
DOI: 10.6084/m9.figshare.c.3604820_d6
title: MOESM7 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 7: Table S4. Performance for each MuTect or Strelka based pipeline, as well as the performance of every possible intersection or union of those pipelines, is listed in this supplemental Excel document. Each pipeline is represented by a three letter code: a b or n for the aligner (BWA or Novoalign), a g or r for read processing steps (GATK realignment/recalibration or â  rawâ   for no processing) and an m or s for caller (MuTect or Strelka).
DOI: 10.6084/m9.figshare.c.3604808_d7
title: MOESM2 of New insights into the heterogeneity of Th17 subsets contributing to HIV-1 persistence during antiretroviral therapy

description: Additional file 2. Genome-wide transcriptional profiling of the newly identified CCR6+DN and CCR6+DP subsets relative to the previously characterized Th17/CCR4+CCR6+ cells. See attached document.
DOI: 10.6084/m9.figshare.c.3604820_d8
title: MOESM6 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 6: Table S3. A breakdown of the classification results for variants verified in 12 primary or xenograft PDAC samples.
DOI: 10.6084/m9.figshare.c.3604835_d3
title: Additional file 1 of Mining for novel candidate clock genes in the circadian regulatory network

description: Complete score table from the meta-analysis for all the 1000 master list genes with individual hits of a gene within each data set. (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3604820_d10
title: MOESM1 of A cancer cell-line titration series for evaluating somatic classification

description: Additional file 1: Table S1. The chromosome, position, reference and alternative bases for the 193 SNVs and 17 indels that were verified as being true somatic calls are listed here. The variant read frequency observed in the verification sequencing is also listed here.
DOI: 10.6084/m9.figshare.c.3604841_d2
title: Additional file 2: of Stochastic epigenetic outliers can define field defects in cancer

description: GSEA result tables of hypervariable DVCs, as identified using iEVORA, in the normal breast study comparing normal breast from healthy women to normal breast adjacent to breast cancer. There are 4 tables, corresponding to hypervariable DVCs mapping to TSS1500, TSS200 or 1st Exon regions, and which are hypermethylated (dvUPdmUP) or hypomethylated (dvUPdmDN) in normal-adjacent tissue, as well as hypervariable DVCs mapping to gene-body or 5â ˛UTR regions, which are hypermethylated (dvUPdmUP-GB) or hypomethylated (dvUPdmDN-GB) in normal-adjacent tissue. In each case, the columns label the number of genes in the MSigDB database list (nList), the number present prior to iEVORA analysis (nRep), the corresponding fraction (fRep), the number of genes overlapping with the iEVORA selected list (nOVLAP), the corresponding odds ratio (OR) and one-tailed Fisher test P-value (P-value), the adjusted P-value using Benjamini-Hochberg correction, and the gene symbols of the genes present in the overlap. (XLS 54 kb)
DOI: 10.5519/qd.3wogm86g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5 records)
DOI: 10.6084/m9.figshare.c.3604853_d11
title: Additional file 3: of Genomic consequences of selection and genome-wide association mapping in soybean

description: Detail Information of 125 selection features and corresponding candidate genes. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3604853_d13
title: Additional file 11: of Genomic consequences of selection and genome-wide association mapping in soybean

description: The list of 342 soybean landraces and 1062 improved lines sampled in this study. (XLSX 78 kb)
DOI: 10.6084/m9.figshare.c.3604901_d2
title: Additional file 2: Table S2. of Evidence for common horizontal transmission of Wolbachia among butterflies and moths

description: Description of available MLST strains of Wolbachia in Lepidoptera used in this study (accessed March 2014 at http://pubmlst.org/Wolbachia/ ). (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3604901_d4
title: Additional file 1: Table S1. of Evidence for common horizontal transmission of Wolbachia among butterflies and moths

description: All published publicly available MLST strains of Wolbachia used in this study (accessed March 2014 at http://pubmlst.org/Wolbachia/ ). (XLSX 80 kb)
DOI: 10.6084/m9.figshare.c.3604955_d1
title: Additional file 7: of Evolution of long centromeres in fire ants

description: CenSol repeat sequences cloned from the genomes of S. invicta and S. geminata. (TXT 11Â kb)
DOI: 10.6084/m9.figshare.c.3604955_d2
title: Additional file 1: of Evolution of long centromeres in fire ants

description: Tandem repeat monomers identified from the S. invicta genomeďťż. (TXT 2835Â kb)
DOI: 10.6084/m9.figshare.c.3604955_d3
title: Additional file 6: of Evolution of long centromeres in fire ants

description: The unique set of 109 bp CenSol repeat sequences in the S. geminata genome. (TXT 634Â kb)
DOI: 10.6084/m9.figshare.c.3604958_d2
title: Additional file 5: of Intestinal microbial communities associated with acute enteric infections and disease recovery

description: Operational taxonomic units in the intestinal communities from patients infected with different enteric pathogens and otherwise healthy individuals without enteric infections. (XLSX 320Â kb)
DOI: 10.6084/m9.figshare.c.3604973_d1
title: Additional file 4: Figure S4. of ANLN is a prognostic biomarker independent of Ki-67 and essential for cell cycle progression in primary breast cancer

description: A. Influence of ANLN on cell morphology in SKBR3 cells. Immunofluorescent staining of SKBR3 breast cancer cell lines showed that ANLN siRNA knockdown induced a larger cell size and cells with multiple nuclei compared to controls up to 5 days after knockdown. ANLN was stained with FITC (green), nuclei were stained with DAPI (blue) and actin filaments were stained with TRITC (red). Scale bars 30 μm. B. Influence of ANLN on cell morphology in T47D cells. Immunofluorescent staining of T47D breast cancer cell lines showed that ANLN siRNA knockdown induced a larger cell size and cells with multiple nuclei compared to controls up to 5 days after knockdown. ANLN was stained with FITC (green), nuclei were stained with DAPI (blue) and actin filaments were stained with TRITC (red). Scale bars 30 μm. (ZIP 4784 kb)
DOI: 10.6084/m9.figshare.c.3604955_d5
title: Additional file 5: of Evolution of long centromeres in fire ants

description: The unique set of 109 bp CenSol repeat sequences in the S. invicta genome. (TXT 1226Â kb)
DOI: 10.6084/m9.figshare.c.3604958_d3
title: Additional file 4: of Intestinal microbial communities associated with acute enteric infections and disease recovery

description: Metadata associated with the individuals included in the study. (XLSX 16Â kb)
DOI: 10.6084/m9.figshare.c.3605006_d2
title: Additional file 1: of The relevance of cortical lesions in patients with multiple sclerosis

description: Neuropsychological tests summarized in the three cognitive indices. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3605021_d2
title: Additional file 2: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

description: Primer sequences of the microcosm genes analysed by real-time RT-PCR. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3605021_d3
title: Additional file 5: of Transcriptomic responses of a simplified soil microcosm to a plant pathogen and its biocontrol agent reveal a complex reaction to harsh habitat

description: Expression levels of genes of the simplified soil microcosm. (XLSX 39274 kb)
DOI: 10.6084/m9.figshare.c.3605030_d2
title: Additional file 5: Table S3. of Comparative transcriptome analysis revealing dormant conidia and germination associated genes in Aspergillus species: an essential role for AtfA in conidial dormancy

description: FPKM values of the 6172 common genes. (XLSX 986Â kb)