cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/v289k-x3888
title: Cos7 cells

description: Synchronized Cos7 cells, looking for midbodies
description: <strong>Tilt Series Date:</strong> 2015-01-20</p>
<strong>Data Taken By:</strong> Rasika Ramdasi</p>
<strong>Species / Specimen:</strong> Cos7</p>
<strong>Strain:</strong> Cos7 cells</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> UCSF tomo</p>
<strong>Sample Preparation:</strong> Synchronized Cos7 cells with siRNA NUP 153 and Thymidine 2mM</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-17/rawdata/</p>cos30004.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-17/rawdata/cos30004.mrc"
        > <i class="download icon"></i> Download </a></p>

        cos30004_part121_1.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/rra2015-01-20-17/3dimage_51165/cos30004_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2trfg8
title: Occurrence Download

description: A dataset containing 8911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Carpornis cucullata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8911 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046991-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mypskz
title: Occurrence Download

description: A dataset containing 595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pinus cembra",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 595 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046993-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5tbrn-fb985
title: pED208_6um

description: t4ss in E.colli with F pilus
description: <strong>Tilt Series Date:</strong> 2015-02-11</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> LB o/n 37C</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-22/rawdata/</p>pED_6um_Feb100010.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-22/rawdata/pED_6um_Feb100010.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED_6um_Feb100010_full.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-02-11-22/3dimage_51750/pED_6um_Feb100010_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/nhkj0-daq31
title: T9_wt

description: This was a wt sample prepared with Paul when he was visiting
description: <strong>Tilt Series Date:</strong> 2016-04-30</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Paul Veith and Eric Reynolds</p>
<strong>Purification / Growth Conditions / Treatment:</strong> See pages 84-86</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-96/rawdata/</p>atlas10086.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-96/rawdata/atlas10086.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10086_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2016-04-30-96/3dimage_74696/atlas10086_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/456wj-1fm32
title: T9_ABK triple mutant

description: This is a sample that was prepared when Paul vsited
description: <strong>Tilt Series Date:</strong> 2017-01-25</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Paul Veith and Eric Reynolds</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-25-58/rawdata/</p>sq20016.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-25-58/rawdata/sq20016.mrc"
        > <i class="download icon"></i> Download </a></p>

        sq20016_full.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2017-01-25-58/3dimage_81590/sq20016_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2mhk3-wep17
title: Vibrio CheWCheWCheA knockout

description: C6706Z- ∆vca1093 ∆vca1094 ∆vca1095 (CheWCheWCheA knockout cluster 3)
description: <strong>Tilt Series Date:</strong> 2015-06-03</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O1 biovar El Tor</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Simon Ringgaard</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-06-03-21/rawdata/</p>PM7June0021.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-06-03-21/rawdata/PM7June0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        PM7June0021_full.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-06-03-21/3dimage_57956/PM7June0021_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16260886
title: DIATLAS - The French freshwater DIatom ATLAS image dataset
title: Diatom Atlas Dataset

description: This dataset contains photonic (optical) microscopy images of diatoms extracted from French regional atlases, documenting specimens collected from freshwater streams. These images were acquired using either Bright Field (BF) or Differential Interference Contrast (DIC) techniques. Each image is associated with a taxonomic classification.

This dataset was used to train two Convolutional Neural Network (CNN) models:



A detection model, based on the ai4oshub/ai4os-yolov8-torch module, designed to predict oriented bounding boxes around diatoms. It is built on a pre-trained YOLOv8, fine-tuned on manually labeled data.



 > Diatom detection with oriented bounding boxes



A classification model, based on Ultralytics' YOLOv8-cls architecture, designed to classify diatom at the species level. 

> Diatom classification at the species level



Image metadata are provided in the diatoms.csv, sources.csv, and taxonomic_code.csv files.

 
description: All informations are detailed in the README.pdf

Data sources

The dataset is based on images gathered from French regional diatom taxonomic atlases (available as open-access PDFs). All informations are detailed in the README.pdf

Contact information

For more information on the dataset and/or the models, you can contact martin.laviale @ univ-lorraine.fr & Jeremy.Fix @ centralesupelec.fr
DOI: 10.5281/zenodo.16260887
title: DIATLAS - The French freshwater DIatom ATLAS image dataset
title: Diatom Atlas Dataset

description: This dataset contains photonic (optical) microscopy images of diatoms extracted from French regional atlases, documenting specimens collected from freshwater streams. These images were acquired using either Bright Field (BF) or Differential Interference Contrast (DIC) techniques. Each image is associated with a taxonomic classification.

This dataset was used to train two Convolutional Neural Network (CNN) models:



A detection model, based on the ai4oshub/ai4os-yolov8-torch module, designed to predict oriented bounding boxes around diatoms. It is built on a pre-trained YOLOv8, fine-tuned on manually labeled data.



 > Diatom detection with oriented bounding boxes



A classification model, based on Ultralytics' YOLOv8-cls architecture, designed to classify diatom at the species level. 

> Diatom classification at the species level



Image metadata are provided in the diatoms.csv, sources.csv, and taxonomic_code.csv files.

 
description: All informations are detailed in the README.pdf

Data sources

The dataset is based on images gathered from French regional diatom taxonomic atlases (available as open-access PDFs). All informations are detailed in the README.pdf

Contact information

For more information on the dataset and/or the models, you can contact martin.laviale @ univ-lorraine.fr & Jeremy.Fix @ centralesupelec.fr
DOI: 10.22002/xqfvs-7kg24
title: A411V in vitro

description: A411V PEG in vitro sample7.5%PEG (in 1x P.P buffer) with 50µM CFA411V4Q, 12µM CheA, 20 µM CheW, 4% Trehalose [50µl total volume]
description: <strong>Tilt Series Date:</strong> 2015-07-09</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli in vitro</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -6.0 μm,  magnification: 53000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Lynmarie Thompson</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-09-38/rawdata/</p>A411V_53mag0017.mrc,  Tilt Series (Pixel Size 0.206 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-09-38/rawdata/A411V_53mag0017.mrc"
        > <i class="download icon"></i> Download </a></p>

        A411V_53mag0017_part41_11.rec,  Reconstruction (Pixel Size 0.824 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-09-38/3dimage_59070/A411V_53mag0017_part41_11.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4jw14-f5g27
title: Pseudomonas full length aer2

description: Pseudomonas full length aer2 on plasmid, no induction
description: <strong>Tilt Series Date:</strong> 2015-07-28</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-17/rawdata/</p>Pseudofullaer2plasmidJuly0020.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-17/rawdata/Pseudofullaer2plasmidJuly0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pseudofullaer2plasmidJuly0020_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-07-28-17/3dimage_59767/Pseudofullaer2plasmidJuly0020_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wtwpr-vm497
title: P. gingivalis ABK mutant

description: Raw data files of P. gingivalis ABK mutant
description: <strong>Tilt Series Date:</strong> 2017-12-11</p>
<strong>Data Taken By:</strong> Georges Chreifi</p>
<strong>Species / Specimen:</strong> Porphyromonas gingivalis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Reynolds</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-11-20/rawdata/</p>Pgin3_0020.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-11-20/rawdata/Pgin3_0020.mrc"
        > <i class="download icon"></i> Download </a></p>

        Pgin3_0020_part121_16.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gca2017-12-11-20/3dimage_91149/Pgin3_0020_part121_16.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fjgnp-7ak88
title: Cthermocellum3_d3

description: microcrystalin cellulose
description: <strong>Tilt Series Date:</strong> 2015-05-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Clostridium thermocellum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-09-15/rawdata/</p>Cthermo3_d30011.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-09-15/rawdata/Cthermo3_d30011.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cthermo3_d30011_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-05-09-15/3dimage_56196/Cthermo3_d30011_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.z88p9d
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhizothera longirostris",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046994-250811113504898/datasets/export for details.
DOI: 10.22002/s70d8-n6f91
title: twitching Pseudomonas delta-pilH

description: Box YWC213delta-pilH hyperpiliated mutantCells incubated on mucin-coated grid to promote twitching
description: <strong>Tilt Series Date:</strong> 2016-06-01</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 170.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sample prepared in collaboration with Alex Persat</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-06-01-31/rawdata/</p>20160531_YWC213_20032.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-06-01-31/rawdata/20160531_YWC213_20032.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160531_YWC213_20032_full.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-06-01-31/3dimage_75151/20160531_YWC213_20032_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4jmkm-0n491
title: Sulfolobus

description: Raw data files of Sulfolobus
description: <strong>Tilt Series Date:</strong> 2017-11-17</p>
<strong>Data Taken By:</strong> Wei Zhao</p>
<strong>Species / Specimen:</strong> Sulfolobus acidocaldarius</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Sample Preparation:</strong> Plunge frozen using the vitrobot III blotted manually from back(drain time 1s).</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-11-17-3/rawdata/</p>TS5_bin2.mrc,  Tilt Series (Pixel Size 0.372 nm), 327.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-11-17-3/rawdata/TS5_bin2.mrc"
        > <i class="download icon"></i> Download </a></p>

        TS5_bin2.rec,  Reconstruction (Pixel Size 0.0 nm), 237.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2017-11-17-3/3dimage_92869/TS5_bin2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/9fb78-vqj18
title: twitching Pseudomonas WT

description: Box YWC219-1Cells incubated on grid to promote twitching
description: <strong>Tilt Series Date:</strong> 2016-08-21</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sample prepared in collaboration with Alex Persat</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-1/rawdata/</p>20160821_YWC219_10001.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-1/rawdata/20160821_YWC219_10001.mrc"
        > <i class="download icon"></i> Download </a></p>

        20160821_YWC219_10001_part121_1.rec,  Reconstruction (Pixel Size 1.56 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2016-08-21-1/3dimage_78212/20160821_YWC219_10001_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>