cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.evwwsj
title: Occurrence Download

description: A dataset containing 4246 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Garrulax ruficollis (Jardine & Selby, 1838)"
 ]
}

 The dataset includes 4246 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050309-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvqaff
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica mundii Guthrie & Bolus"
 ]
}

 The dataset includes 57 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045328-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj9nm5
title: Occurrence Download

description: A dataset containing 1666 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos ambientales, oceanográficos y meteorológicos generados en proyectos de exploración de hidrocarburos 2007-2017"
 ]
}

 The dataset includes 1666 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019770-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23729/fd-1a544a4f-57bc-3418-a138-01c52af04610
title: 2050 Forest Understory Temperature Projections for Southeast Asia (SSP Scenarios)

description: This dataset provides projections of maximum microclimate temperature under three future scenarios (SSP1, SSP2, SSP5) for Southeast Asia in the year 2050. It represents the temperature at 15 cm above ground level, specifically during the warmest hour of the day (14:00–15:00). The data is intended to reflect forest understory conditions.

Files:

SSP1_2050: Forest understory maximum temperature for 2050 under the SSP1 scenario.

SSP2_2050: Forest understory maximum temperature for 2050 under the SSP2 scenario.

SSP5_2050: Forest understory maximum temperature for 2050 under the SSP5 scenario.

All files are in GeoTIFF format and represent the same temporal window (14:00–15:00).

Units: Degrees Celsius
No data value: NA
Spatial resolution: ~1 km
DOI: 10.5281/zenodo.14376862
title: Meta-analysis data and code for 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214)

description: The following dataset includes R code, data files, and appendix S3 for the meta-analyses of our manuscript 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214).
DOI: 10.5281/zenodo.14376863
title: Meta-analysis data and code for 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214)

description: The following dataset includes data for the meta-analyses of our manuscript 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214).
DOI: 10.5281/zenodo.15193564
title: Meta-analysis data and code for 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214)

description: The following dataset includes R code, data files, and appendix S3 for the meta-analyses of our manuscript 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214).
DOI: 10.5281/zenodo.15193904
title: Meta-analysis data and code for 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214)

description: The following dataset includes R code, data files, and appendix S3 for the meta-analyses of our manuscript 'Global consequences of dam-induced river fragmentation on diadromous migrants: a systematic review and meta-analysis' (BRV-05-2024-0214).
DOI: 10.15156/bio/sh0195958.10fu
title: SH0195958.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195959.10fu
title: SH0195959.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195960.10fu
title: SH0195960.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5441/001/1.k8s2g5v7
title: Data from: A multi-scale test of the forage maturation hypothesis in a partially migratory ungulate population

description: The forage maturation hypothesis (FMH) proposes that ungulate migration is driven by selection for high forage quality. Because quality declines with plant maturation, but intake declines at low biomass, ungulates are predicted to select for intermediate forage biomass to maximize energy intake by following phenological gradients during the growing season. We tested the FMH in the Canadian Rocky Mountains by comparing forage availability and selection by both migrant and nonmigratory resident elk (Cervus elaphus) during three growing seasons from 2002–2004. First, we confirmed that the expected trade-off between forage quality and quantity occurred across vegetation communities. Next, we modeled forage biomass and phenology during the growing season by combining ground and remote-sensing approaches. The growing season started 2.2 days earlier every 1 km east of the continental divide, was delayed by 50 days for every 1000-m increase in elevation, and occurred 8 days earlier on south aspects. Migrant and resident selection for forage biomass was then compared across three spatial scales (across the study area, within summer home ranges, and along movement paths) using VHF and GPS telemetry locations from 119 female elk. Migrant home ranges occurred closer to the continental divide in areas of higher topographical diversity, resulting in migrants consistently selecting for intermediate biomass at the two largest scales, but not at the finest scale along movement paths. In contrast, residents selected maximum forage biomass across all spatial scales. To evaluate the consequences of selection, we compared exposure at telemetry locations of migrant and resident elk to expected forage biomass and digestibility. The expected digestibility for migrant elk in summer was 6.5% higher than for residents, which was corroborated with higher fecal nitrogen levels for migrants. The observed differences in digestibility should increase migrant elk body mass, pregnancy rates, and adult and calf survival rates. Whether bottom-up effects of improved forage quality are realized will ultimately depend on trade-offs between forage and predation. Nevertheless, this study provides comprehensive evidence that montane ungulate migration leads to greater access to higher-quality forage relative to nonmigratory congeners, as predicted by the forage maturation hypothesis, resulting primarily from large-scale selection patterns.
DOI: 10.15156/bio/sh0195961.10fu
title: SH0195961.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195962.10fu
title: SH0195962.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195963.10fu
title: SH0195963.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195964.10fu
title: SH0195964.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0195965.10fu
title: SH0195965.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.14179028
title: IODP Expedition 367 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS], and inorganic carbon from [Coulometer]). Each row combines the  CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.
DOI: 10.5281/zenodo.14179029
title: IODP Expedition 367 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS], and inorganic carbon from [Coulometer]). Each row combines the  CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.
DOI: 10.6084/m9.figshare.24543322
title: Dataset for COVID CD8+ T cell Epitope Paper

description: In this bioinformatics-based study, we explored the CD8+ epitope diversity estimated 27 of the most common HLA-A and -B alleles, representing most of the United States population. Analysis of 16 SARS-CoV-2 variants (2 Alpha (B.1, B.1.1.7), 5 Delta (AY.100, AY.25, AY.3, AY.3.1, AY.44), and 9 Omicron (BA.1, BA.1.1, BA.2, BA.4, BA.5, BQ.1, BQ.1.1, XBB.1, XBB.1.5)) in analyzed MHC Class I alleles revealed SARS-Cov-2 CD8+ epitope conservation was estimated at 87.6-96.5% in spike (S), 92.5-99.6% in membrane (M), and 94.6-99% for nucleocapsid (N).
DOI: 10.6084/m9.figshare.24543322.v1
title: Dataset for COVID CD8+ T cell Epitope Paper

description: In this bioinformatics-based study, we explored the CD8+ epitope diversity estimated 27 of the most common HLA-A and -B alleles, representing most of the United States population. Analysis of 16 SARS-CoV-2 variants (2 Alpha (B.1, B.1.1.7), 5 Delta (AY.100, AY.25, AY.3, AY.3.1, AY.44), and 9 Omicron (BA.1, BA.1.1, BA.2, BA.4, BA.5, BQ.1, BQ.1.1, XBB.1, XBB.1.5)) in analyzed MHC Class I alleles revealed SARS-Cov-2 CD8+ epitope conservation was estimated at 87.6-96.5% in spike (S), 92.5-99.6% in membrane (M), and 94.6-99% for nucleocapsid (N).
DOI: 10.6084/m9.figshare.24543322.v2
title: Dataset for COVID CD8+ T cell Epitope Paper

description: In this bioinformatics-based study, we explored the CD8+ epitope diversity estimated 27 of the most common HLA-A and -B alleles, representing most of the United States population. Analysis of 16 SARS-CoV-2 variants (2 Alpha (B.1, B.1.1.7), 5 Delta (AY.100, AY.25, AY.3, AY.3.1, AY.44), and 9 Omicron (BA.1, BA.1.1, BA.2, BA.4, BA.5, BQ.1, BQ.1.1, XBB.1, XBB.1.5)) in analyzed MHC Class I alleles revealed SARS-Cov-2 CD8+ epitope conservation was estimated at 87.6-96.5% in spike (S), 92.5-99.6% in membrane (M), and 94.6-99% for nucleocapsid (N).
DOI: 10.5281/zenodo.14179032
title: IODP Expedition 367 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.5281/zenodo.14179033
title: IODP Expedition 367 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.5281/zenodo.14179034
title: IODP Expedition 367 Closeup images

description: Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section halves in sediments and rock.
DOI: 10.5281/zenodo.14179035
title: IODP Expedition 367 Closeup images

description: Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section halves in sediments and rock.
DOI: 10.5281/zenodo.14179267
title: IODP Expedition 367 Bulk Density (GRA)

description: Gamma ray attenuation (GRA) data were acquired using a Cs-137 collimated source and a sodium iodide (thallium), or NaI(Tl), scintillation detector. The signal was calibrated using water and aluminum standards to provide a proxy for bulk density. This measurement was performed by a sensor mounted on either the Whole-Round Multisensor Logger (WRMSL) or the Special Task Multisensor Logger (STMSL); which track was used for a given data set is indicated in the data.
DOI: 10.5281/zenodo.14179268
title: IODP Expedition 367 Bulk Density (GRA)

description: Gamma ray attenuation (GRA) data were acquired using a Cs-137 collimated source and a sodium iodide (thallium), or NaI(Tl), scintillation detector. The signal was calibrated using water and aluminum standards to provide a proxy for bulk density. This measurement was performed by a sensor mounted on either the Whole-Round Multisensor Logger (WRMSL) or the Special Task Multisensor Logger (STMSL); which track was used for a given data set is indicated in the data.