cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7199366
title: TRES Cross Foster 2016

description: Data from Tree Swallow populations in Davis, CA. Data taken during 2016 breeding season. Traffic noise was experimentally applied to field sites and eggs were cross-fostered between nests that had exposure to varying traffic noise amplitudes. We then assessed direct vs. maternal effects of noise on nestling baseline and stress-induced cort, body condition, and telomere attrition.
DOI: 10.6084/m9.figshare.7199366.v1
title: TRES Cross Foster 2016

description: Data from Tree Swallow populations in Davis, CA. Data taken during 2016 breeding season. Traffic noise was experimentally applied to field sites and eggs were cross-fostered between nests that had exposure to varying traffic noise amplitudes. We then assessed direct vs. maternal effects of noise on nestling baseline and stress-induced cort, body condition, and telomere attrition.
DOI: 10.7284/133714
title: INS (Inertial Navigation System) data collected during research cruise SR1908 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7198280
title: CoCoScore Supplementary Data v1.0

description: Supplementary Data: CoCoScore: Context-aware co-occurrence scoring for text mining applications using distant supervision<br># Text mining dictionaries<br>The entities file (entities.tsv.gz), names file (names.tsv.gz), and groups file (groups.tsv.gz) were used to identify proteins/genes, diseases, and tissues in the PubMed + PMC corpus.Please check the following README for usage of these files: https://bitbucket.org/larsjuhljensen/tagger/src/default/README.md<br># Datasets and pre-trained sentence classification models<br>## H. sapiens disease-gene associations<br>Training dataset: dataset_9606_-26_train.tsv.gzTest dataset: dataset_9606_-26_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_-26.ftz<br>## H. sapiens tissue-gene associations<br>Training dataset: dataset_9606_-25_train.tsv.gzTest dataset: dataset_9606_-25_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_-25.ftz<br>## H. sapiens functional protein-protein associations<br>Training dataset: dataset_9606_9606_train.tsv.gzTest dataset: dataset_9606_9606_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_9606.ftz<br>## D. melanogaster functional protein-protein associations<br>Training dataset: dataset_7227_7227_train.tsv.gzTest dataset: dataset_7227_7227_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_7227_7227.ftz<br>## S. cerevisiae functional protein-protein associations<br>Training dataset: dataset_4932_4932_train.tsv.gzTest dataset: dataset_4932_4932_test.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_4932_4932.ftz<br>## H. sapiens physical protein-protein interactions<br>Training dataset: dataset_9606_9606_train_physical.tsv.gzTest dataset: dataset_9606_9606_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_9606_9606_physical.ftz<br>## D. melanogaster physical protein-protein interactions<br>Training dataset: dataset_7227_7227_train_physical.tsv.gzTest dataset: dataset_7227_7227_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_7227_7227_physical.ftz<br>## S. cerevisiae physical protein-protein interactions<br>Training dataset: dataset_4932_4932_train_physical.tsv.gzTest dataset: dataset_4932_4932_test_physical.tsv.gzfastText Sentence classification models trained on training dataset: ft_model_CoCoScore_pretrained_4932_4932_physical.ftz<br># Pre-trained word embeddings<br>Pre-trained fastText word embeddings can be found in: fasttext_sg_masked_dim_300_epoch_5_lr_0.05_minn_3_maxn_6_ws_5.vec.gz
DOI: 10.7284/133715
title: INS (Inertial Navigation System) data collected during research cruise SR1908 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7197911
title: Aquaponics with shrimp and halophytes - Supplementary Data

description: <pre><pre>Description of Supplementary data - Article ‘Aquaponics with shrimp and halophytes’.</pre>The data includes the following files:1 - Information about <i>Batis maritima</i>, <i>Sarcocornia ambigua</i> e <i>Sporobolus virginicus</i>;2 - Experiment location details;3 - Construction and assembly of experimental units;4 - Preparation and cultivation of halophytes;5 - Physical-chemical variable data;6 - Script in RStudio (ANOVA, mixed models, figures 1-10). Files in .txt for the R: 6.1 dados.txt, 6.2 perda agua.txt, 6.3 serie nitrogenada.txt, 6.4 PCA.txt, 6.5 diarios.txt</pre>
DOI: 10.7284/133716
title: INS (Inertial Navigation System) data collected during research cruise SR1908 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133702
title: Meteorological Station data collected during research cruise SR1908 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133705
title: Multibeam Echosounder data collected during research cruise SR1908 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133708
title: Multibeam Echosounder data collected during research cruise SR1908 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133710
title: Winch data collected during research cruise SR1908 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133711
title: Winch data collected during research cruise SR1908 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/133712
title: Winch data collected during research cruise SR1908 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195874
title: 7.Institutional linkages collaboration tutorial.ipynb

description: A Jupyter notebook that demonstrates how to make an institutional linkages graph
DOI: 10.6084/m9.figshare.7195874.v2
title: 7.Institutional linkages collaboration tutorial.ipynb

description: A Jupyter notebook that demonstrates how to make an institutional linkages graph
DOI: 10.7284/134392
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1910 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134389
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1910 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4005402
title: Barrier effect of the Pearl River estuarine plume on wind

description: temperature,salinity, nitrate data which were used in the paper titled"Barrier effect of the Pearl River estuarine plume on wind"
DOI: 10.6084/m9.figshare.7195808
title: unfiltered SNPs for L8708 x DcZ020 mapping population

description: This is a variant call format (VCF) file containing unfiltered SNPs for an F<sub>2 </sub>mapping population in carrot. This population was derived from a cross between L8708, an orange inbred line with a medium-long storage root and compact shoots, and Z020, a yellow, cultivated landrace from Uzbekistan with a short, blunt-tipped storage root and broad, prostrate leaves.<br>
DOI: 10.7284/134393
title: INS (Inertial Navigation System) data collected during research cruise SR1910 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.4005401
title: Barrier effect of the Pearl River estuarine plume on wind

description: temperature,salinity, nitrate data which were used in the paper titled"Barrier effect of the Pearl River estuarine plume on wind"
DOI: 10.6084/m9.figshare.7195808.v1
title: unfiltered SNPs for L8708 x DcZ020 mapping population

description: This is a variant call format (VCF) file containing unfiltered SNPs for an F<sub>2 </sub>mapping population in carrot. This population was derived from a cross between L8708, an orange inbred line with a medium-long storage root and compact shoots, and Z020, a yellow, cultivated landrace from Uzbekistan with a short, blunt-tipped storage root and broad, prostrate leaves.<br>
DOI: 10.7284/134401
title: INS (Inertial Navigation System) data collected during research cruise SR1910 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134402
title: INS (Inertial Navigation System) data collected during research cruise SR1910 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134403
title: INS (Inertial Navigation System) data collected during research cruise SR1910 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134386
title: Meteorological Station data collected during research cruise SR1910 using a SIO MET-System instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134390
title: Multibeam Echosounder data collected during research cruise SR1910 using a Kongsberg EM712 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195772
title: dslquery script for use with the Dimensions API

description: dslquery script for use with the Dimensions API.
DOI: 10.7284/134391
title: Multibeam Echosounder data collected during research cruise SR1910 using a Kongsberg EM122 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195772.v1
title: dslquery script for use with the Dimensions API

description: dslquery script for use with the Dimensions API.
DOI: 10.6084/m9.figshare.7195772.v2
title: dslquery script for use with the Dimensions API

description: dslquery script for use with the Dimensions API.
DOI: 10.7284/134387
title: Singlebeam Echosounder data collected during research cruise SR1910 using a Knudsen 3260 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195760
title: Mathematica notebooks related to imaging with two skew ideal lenses

description: Mathematica notebooks containing detailed calculations of image positions for a general system of two skew ideal lenses. <br> TwoParallelLensProof.nb: Mathematica document in which the image position is calculated due to a system of two parallel non-coaxial lenses, both in cartesian and lens-imaging coordinates. <br> TwoLensProof2D.nb: Mathematica document in which the image position in two dimensions is calculated due to a system of two skew lenses, both in cartesian and lens-imaging coordinates. <br> TwoLensProof.nb: Mathematica document in which the image position in three dimensions is calculated due to a system of two skew lenses, both in cartesian and lens-imaging coordinates. <br> Mathematica documents can be viewed either in Mathematica, which requires a license, or in the Wolfram CDF player, which is freely available from the Wolfram website, currently at https://www.wolfram.com/cdf-player/ .
DOI: 10.6084/m9.figshare.7195736
title: TDE1n15pLate

description: sim results<br>
DOI: 10.6084/m9.figshare.7195751
title: Susceptibility of Drosophila melanogaster DSPR lines to three sigma viruses

description: We sampled 377 RILs from these populations, which have a sample of up to 15 alleles of each gene (one founder line is shared between the two populations). We infected 15,916 flies across 1362 biological replicates with DMelSV, DAffSV or DObsSV and measured viral load as above. To examine the genetic basis of virus resistance, we looked for associations between genotype and viral load across the genome.
DOI: 10.6084/m9.figshare.7195736.v1
title: TDE1n15pLate

description: sim results<br>
DOI: 10.6084/m9.figshare.7195751.v1
title: Susceptibility of Drosophila melanogaster DSPR lines to three sigma viruses

description: We sampled 377 RILs from these populations, which have a sample of up to 15 alleles of each gene (one founder line is shared between the two populations). We infected 15,916 flies across 1362 biological replicates with DMelSV, DAffSV or DObsSV and measured viral load as above. To examine the genetic basis of virus resistance, we looked for associations between genotype and viral load across the genome.
DOI: 10.7284/134397
title: Winch data collected during research cruise SR1910 using a Markey DETW-9-11 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195721
title: TDE7n15pLate

description: sim results<br>
DOI: 10.6084/m9.figshare.7195721.v1
title: TDE7n15pLate

description: sim results<br>
DOI: 10.7284/134398
title: Winch data collected during research cruise SR1910 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195712
title: Raw data for "Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer"

description: The raw data of the lncRNA profiles was downloaded from the TCGA database.
DOI: 10.6084/m9.figshare.7195712.v1
title: Raw data for "Development of a novel signature of long noncoding RNAs as a prognostic biomarker for esophageal cancer"

description: The raw data of the lncRNA profiles was downloaded from the TCGA database.
DOI: 10.7284/134399
title: Winch data collected during research cruise SR1910 using a Markey CAST-6-125 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195661
title: Simple biophysical models of short term synaptic plasticity (PAPIIT IA208618)

description: Simple, low dimensional biophysical models of short term synaptic plasticity are developed and analyzed to caracterize regimes in which combinations of biophysical parameters result in facilitation, depression, or biphasic synaptic responses. The models are constrained by data obtained by recording postsynaptic responses of striatal neurons to cortical and thalamic inputs.
DOI: 10.7284/134408
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SR1912 using a Hawaii UHDAS instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195661.v1
title: Simple biophysical models of short term synaptic plasticity (PAPIIT IA208618)

description: Simple, low dimensional biophysical models of short term synaptic plasticity are developed and analyzed to caracterize regimes in which combinations of biophysical parameters result in facilitation, depression, or biphasic synaptic responses. The models are constrained by data obtained by recording postsynaptic responses of striatal neurons to cortical and thalamic inputs.
DOI: 10.7284/134406
title: GNSS (Global Navigation Satellite System) data collected during research cruise SR1912 using a Trimble BD982 instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134409
title: INS (Inertial Navigation System) data collected during research cruise SR1912 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195541
title: Trichostatin A, an epigenetic modifier, mitigates radiation-induced androphysiological anomalies and metabolite changes in mice as evident from NMR-based metabolomics

description: <b>Purpose:</b> Ionizing radiation is known to damage male reproductive system. Current study aims to study the mitigative effects of trichostatin A on male reproductive system and accompanying metabolite changes in testicular tissue of mice. <b>Materials and methods:</b> Eight-week-old male C57 Bl/6J mice were exposed to 2 Gy γ-radiation with or without trichostatin A administration. The animals were sacrificed at various time intervals for organ body weight index, sperm head abnormality assay, sperm mobility assay, and study of various metabolites in testicular tissue using NMR spectroscopy. <b>Results:</b> Ionizing radiation induced no significant change in organ body weight index at any time points studied, however a significant increase in sperm head abnormality and significant decrease in sperm mobility was evident on fifth postirradiation week. trichostatin A administration, 1 and 24 h postirradiation, could efficiently mitigate radiation-induced changes studied. NMR metabolome profile also showed prominent changes associated with energy metabolism, osmolytes and membrane metabolism at 24 h postirradiation and some of these changes (choline, glycerolphosphoethanol amine, and glycine) were persistent till fifth postirradiation week. Trichostatin A administration resulted in reverting metabolic profile of the irradiated animals to normal level suggesting its mitigative role. <b>Conclusion:</b> Results obtained suggest that trichostatin A could restore normal metabolic profile of testicular tissue of irradiated male mice and also restored certain morphological and functional properties of sperms. Trichostatin A thus could further be exploited for its radio-mitigative properties.
DOI: 10.7284/134416
title: INS (Inertial Navigation System) data collected during research cruise SR1912 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195541.v1
title: Trichostatin A, an epigenetic modifier, mitigates radiation-induced androphysiological anomalies and metabolite changes in mice as evident from NMR-based metabolomics

description: <b>Purpose:</b> Ionizing radiation is known to damage male reproductive system. Current study aims to study the mitigative effects of trichostatin A on male reproductive system and accompanying metabolite changes in testicular tissue of mice. <b>Materials and methods:</b> Eight-week-old male C57 Bl/6J mice were exposed to 2 Gy γ-radiation with or without trichostatin A administration. The animals were sacrificed at various time intervals for organ body weight index, sperm head abnormality assay, sperm mobility assay, and study of various metabolites in testicular tissue using NMR spectroscopy. <b>Results:</b> Ionizing radiation induced no significant change in organ body weight index at any time points studied, however a significant increase in sperm head abnormality and significant decrease in sperm mobility was evident on fifth postirradiation week. trichostatin A administration, 1 and 24 h postirradiation, could efficiently mitigate radiation-induced changes studied. NMR metabolome profile also showed prominent changes associated with energy metabolism, osmolytes and membrane metabolism at 24 h postirradiation and some of these changes (choline, glycerolphosphoethanol amine, and glycine) were persistent till fifth postirradiation week. Trichostatin A administration resulted in reverting metabolic profile of the irradiated animals to normal level suggesting its mitigative role. <b>Conclusion:</b> Results obtained suggest that trichostatin A could restore normal metabolic profile of testicular tissue of irradiated male mice and also restored certain morphological and functional properties of sperms. Trichostatin A thus could further be exploited for its radio-mitigative properties.
DOI: 10.7284/134417
title: INS (Inertial Navigation System) data collected during research cruise SR1912 using a Kongsberg Seapath 330+ instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7195511
title: Microsatellite genotyping of Gentiana lawrencei

description: Microsatellite genotyping of 10 loci in <em>Gentiana lawrencei</em>
DOI: 10.6084/m9.figshare.7195505
title: Supplementary Material for: Activation Levels, Cardiovascular Risk, and Functional Impairment in Remitted Bipolar Patients: Clinical Relevance of a Dimensional Approach

description: Medicine
DOI: 10.7284/134418
title: INS (Inertial Navigation System) data collected during research cruise SR1912 using a iXSea Hydrins instrument system onboard the platform RV Sally Ride

description: Original (unprocessed) data collected during a Field_expedition