cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20521997.v1
title: Identification of cancer risk assessment signature in patients with chronic obstructive pulmonary disease and exploration of the potential key genes

description: It is essential to assess the cancer risk for patients with chronic obstructive pulmonary disease (COPD). Comparing gene expression data from patients with lung cancer (a total of 506 samples) and those with cancer-adjacent normal lung tissues (a total of 370 samples), we generated a qualitative transcriptional signature consisting of 2046 gene pairs. The signature was verified in an evaluation dataset comprising 18 subjects with severe disease and 52 subjects with moderate disease (Wilcoxon rank-sum test; <i>p</i> = 7.33 × 10<sup>−5</sup>). Similar results were obtained in other independent datasets. Among the gene pairs in the signature, 326 COPD stage-related gene pairs were identified based on Spearman’s rank correlation tests and those gene pairs comprised 368 unique genes. Of these 368 genes, 16 genes were significantly dysregulated in COPD rat model data compared with control data. Some of these genes (<i>Dhx16</i>, <i>Upf2</i>, <i>Notch3</i>, <i>Sec61a1</i>, <i>Dyrk2</i>, and <i>Hmmr</i>) were altered when the COPD rat model was treated with traditional Chinese medicines (TCM), including Bufei Yishen formula, Bufei Jianpi formula, and Yiqi Zishen formula. Overall, the signature could predict the cancer incidence-risk of COPD and the identified key genes might provide guidance regarding both the treatment of COPD using TCM and the prevention of cancer in patients with COPD.
KEY MESSAGESA cancer risk assessment signature was identified in patients with COPD.The signature is insensitive to batch effects and is well verified.COPD key genes identified in this study might play a crucial role in TCM treatment and cancer prevention. A cancer risk assessment signature was identified in patients with COPD. The signature is insensitive to batch effects and is well verified. COPD key genes identified in this study might play a crucial role in TCM treatment and cancer prevention.
DOI: 10.6084/m9.figshare.20977588.v1
title: Soil Temperature Arctic Sample Sites.csv

description: Summary for the soil temperature data of 12 arctic sampling sites
DOI: 10.6084/m9.figshare.8987603
title: Design and Analysis of Flexible Hinge Used for Unfolding Spacecraft Solar Panels

description: ABSTRACT: Two stiffness models for a flexible hinge with large rotation angle are established based on the pseudo-rigid body method and the series or parallel relationship of flexible units. Finite element simulation of the flexible hinge is conducted in ANSYS to verify the two stiffness models of the flexible hinge. A multi-objective optimization method is used to optimize the design parameters of the hinge. The stiffness models of the flexible hinge are used to establish the optimized objective function of an optimization model to improve the rotation angle of the hinge under a certain radial stiffness. After optimization, the rotation angle can reach 70 deg when the rotational and radial stiffnesses are 1.29 N·mm/rad and 1.37 N/mm.
DOI: 10.6084/m9.figshare.22619144
title: Additional file 1 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S1: The autophagy related genes downloaded from Human Autophagy database
DOI: 10.6084/m9.figshare.22619147
title: Additional file 2 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S2: The detailed list of DEGs identified between AS and normal samples
DOI: 10.6084/m9.figshare.22619147.v1
title: Additional file 2 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S2: The detailed list of DEGs identified between AS and normal samples
DOI: 10.6084/m9.figshare.22619150
title: Additional file 3 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S3: All significantly enriched KEGG pathways
DOI: 10.6084/m9.figshare.22619150.v1
title: Additional file 3 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S3: All significantly enriched KEGG pathways
DOI: 10.6084/m9.figshare.22619156
title: Additional file 5 of Macrophage-specific autophagy-related gene HSPB8 is involved in the macrophage polarization in atherosclerosis

description: Additional File: Table S5: The expression difference of 10 MARGs between AS and normal samples
DOI: 10.6084/m9.figshare.22618001.v1
title: Additional file 11 of Comparative genomics analyses reveal sequence determinants underlying interspecies variations in injury-responsive enhancers

description: Additional file 11: Table S5. Significantly enriched KEGG pathways for IRE-associated genes that have orthologous genes in both zebrafish and mice.
DOI: 10.15468/dl.drm8we
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diploglossus monotropis (Kuhl, 1820)"
 ]
}

 The dataset includes 174 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012814-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ev2z92
title: Occurrence Download

description: A dataset containing 12911 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((4.725 52.475,4.775 52.475,4.775 52.525,4.725 52.525,4.725 52.475))",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 12911 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305269-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zkkhuz
title: Occurrence Download

description: A dataset containing 25268956 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-59.0625 15.8599,-75.9375 15.52144,-87.89062 4.81074,-86.83594 -8.16364,-78.75 -23.33822,-83.67187 -34.9724,-82.61719 -54.0181,-68.20312 -58.68608,-61.52344 -57.00246,-53.78906 -54.22414,-52.03125 -50.58045,-60.11719 -48.52825,-54.84375 -44.66553,-45 -33.81202,-35.50781 -21.0599,-28.125 -3.61869,-59.0625 15.8599))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 25268956 records from 2845 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008854-180412121330197/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.5494974
title: When More is Not Merrier: The Effect of Feedback Frequency on Goal Performance

description: Datasets for When More is Not Merrier: The Effect of Feedback Frequency on Goal Performance
DOI: 10.48370/ofd/v5oymi
title: Wywłócznik kłosowy (Myriophyllum spicatum L.), 1656

description: Herbarium
DOI: 10.5281/zenodo.5494973
title: When More is Not Merrier: The Effect of Feedback Frequency on Goal Performance

description: Datasets for When More is Not Merrier: The Effect of Feedback Frequency on Goal Performance
DOI: 10.48370/ofd/kwq548/8knspx
title: HMW_Myriophyllum_spicatum_L._H_0157.jpg

description: :unav
DOI: 10.48370/ofd/kwq548
title: Wywłócznik kłosowy (Myriophyllum spicatum L.), 157

description: Herbarium
DOI: 10.48370/ofd/fkjfal/hh3zcl
title: HMW_Myriophyllum_spicatum_L._H_7587.jpg

description: :unav
DOI: 10.48370/ofd/fkjfal
title: Wywłócznik kłosowy (Myriophyllum spicatum L.), 7587

description: Herbarium
DOI: 10.5281/zenodo.5494809
title: Epizoanthus planus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5494808
title: Epizoanthus planus SPAdes preassembly

description: .
DOI: 10.48370/ofd/mmctf6/cxpdgm
title: HMW_Myriophyllum_spicatum_L._H_7179.jpg

description: :unav
DOI: 10.48370/ofd/mmctf6
title: Wywłócznik kłosowy (Myriophyllum spicatum L.), 7179

description: Herbarium
DOI: 10.48370/ofd/rfqlas/7skvml
title: HMW_Monotropa_hypophegea_Wallr._H_01378.jpg

description: :unav
DOI: 10.48370/ofd/rfqlas
title: Korzeniówka mniejsza (Monotropa hypophegea Wallr.), 1378

description: Herbarium
DOI: 10.6084/m9.figshare.16586684
title: Figshare data.xlsx

description: Questions and raw data of a market research survey evaluating the perceptions and knowledge surrounding the menopause in young adults (aged 18-35) in the UK. The survey asks about whether the menopause is a positive or negative transition, the number of symptoms they know and types of treatments they are aware of. <br>
DOI: 10.6084/m9.figshare.16586684.v1
title: Figshare data.xlsx

description: Questions and raw data of a market research survey evaluating the perceptions and knowledge surrounding the menopause in young adults (aged 18-35) in the UK. The survey asks about whether the menopause is a positive or negative transition, the number of symptoms they know and types of treatments they are aware of. <br>
DOI: 10.48370/ofd/le4kum/acdfzf
title: HMW_Lappula_squarrosa_(Retz.)_Dumort._H_07073.jpg

description: :unav
DOI: 10.48370/ofd/le4kum
title: Lepnik zwyczajny (Lappula squarrosa (Retz.) Dumort.), 7073

description: Herbarium
DOI: 10.48370/ofd/u59ctd/czyrjz
title: HMW_Glechoma_hirsuta_W._et_K._H_9404.jpg

description: :unav
DOI: 10.48370/ofd/u59ctd
title: Bluszczyk kosmaty (Glechoma hirsuta W. et K.), 9404

description: Herbarium
DOI: 10.48370/ofd/tglev5/cqtglb
title: HMW_Glechoma_hirsuta_W._et_K._H_9432.jpg

description: :unav
DOI: 10.48370/ofd/tglev5
title: Bluszczyk kosmaty (Glechoma hirsuta W. et K.), 9432

description: Herbarium
DOI: 10.48370/ofd/6969r4/tuyp31
title: HMW_Glechoma_hirsuta_W._et_K._H_9433.jpg

description: :unav
DOI: 10.48370/ofd/6969r4
title: Bluszczyk kosmaty (Glechoma hirsuta W. et K.), 9433

description: Herbarium
DOI: 10.6084/m9.figshare.16578716
title: Phycobilisome rod genomic regions from uncultured marine Synechococcus

description: Assembled and annotated sequences of phycobilisome rod genomic region from environmental marine <i>Synechococcus </i>populations.
DOI: 10.6084/m9.figshare.16578716.v2
title: Phycobilisome rod genomic regions from uncultured marine Synechococcus

description: Assembled and annotated sequences of phycobilisome rod genomic region from environmental marine <i>Synechococcus </i>populations.
DOI: 10.6084/m9.figshare.16578716.v1
title: Phycobilisome rod genomic regions from uncultured marine synechococcus

description: Assembled and annotated sequences of phycobilisome rod genomic region from environmental marine synechococcus populations.
DOI: 10.5281/zenodo.5495180
title: Public dataset to : Physiological and climate controls on foliar mercury uptake by European tree species

description: Foliar Hg concentrations and daily foliar Hg uptake rates at &gt; 200 forest plots of the ICP Forests Biomonitoring Network (http://icp-forests.net/) in 2015 and 2017.
DOI: 10.5281/zenodo.5495179
title: Public dataset to : Physiological and climate controls on foliar mercury uptake by European tree species

description: Foliar Hg concentrations and daily foliar Hg uptake rates at &gt; 200 forest plots of the ICP Forests Biomonitoring Network (http://icp-forests.net/) in 2015 and 2017.
DOI: 10.6084/m9.figshare.16583501
title: Comparison of Accidental Pediatric Scald Burns in a Tertiary Care Center: Hot Cauldron Burns versus Accidental Spill Burns.sav

description: This is a spss data of accidental pediatric scald injuries with demographic, baseline clinical, interventional and outcome information
DOI: 10.5281/zenodo.5484415
title: Comparative genomics of eight aphid subfamilies reveals variable relationships between host horizontally-transferred genes and symbiont peptidoglycan metabolism.

description: Genome assemblies, annotations, and orthologs of aphids (<em>Geopemphigus sp.</em>, <em>Stegophylla sp.</em>, <em>Chaitophorus viminalis</em>, and<em> Pemphigus obesinymphae</em>) and their symbionts. step1_final_assemblies_and_annotations.tar.gz: Aphid genomes and annotations step2_protein_evidence_used_for_genome_annotation.tar.gz: Protein evidence used for aphid genome annotation step3_amino_acid_inputs_for_aphid_orthologs: amino acid inputs for aphid ortholog assignmentt step5_buchnera_genomes_and_annotations.tar.gz: Buchnera genomes and annotations
DOI: 10.5281/zenodo.5495192
title: Provenance and Tectonic Implications of Upper Neoproterozoic-Lower Paleozoic Sedimentary Rocks in the Yidun Terrane, Eastern Tibetan Plateau

description: The Yidun Terrane, sandwiched between the Qiangtang and Songpan-Ganze terranes, hosts important information in the tectonic evolution of the eastern Tibetan Plateau. However, its tectonic link with adjacent terranes and East Gondwana remains equivocal. Here, we present detrital zircon U-Pb-Hf isotope data from the upper Neoproterozoic-lower Paleozoic clastic rocks in the Yidun Terrane. The results show that detrital zircons from the Neoproterozoic rocks are mainly of ca. 821 – 890 Ma, 1714 – 1977 Ma, and 2317 – 2520 Ma, with ε<sub>Hf</sub>(t) values of each group comparable to coeval magmatic rocks in the nearby South China Block. This suggests that the Yidun Terrane and South China were possibly connected at that time, with the latter being the main detrital provenance. In contrast, the five Paleozoic samples have markedly different detrital zircon age spectra at ca. 2600 – 2300 Ma, 1100 – 900 Ma, 900 – 740 Ma, and 690 – 480 Ma, which were interpreted to have derived from Pan-African and Grenville-age provinces in the East Gondwana, as well as the South China Block and Songpan-Ganze Terrane. Such major provenance change suggests that after prolonged isolation in the Proto-Tethys, the Yidun Terrane began to collide with the East Gondwana in the early Paleozoic. Integrated with published works, we consider that the Yidun Terrane has close tectonic link with the Yangtze Block, and that it was located on the northeastern margin of the India Plate during the early Paleozoic.
DOI: 10.5281/zenodo.5495191
title: Provenance and Tectonic Implications of Upper Neoproterozoic-Lower Paleozoic Sedimentary Rocks in the Yidun Terrane, Eastern Tibetan Plateau

description: The Yidun Terrane, sandwiched between the Qiangtang and Songpan-Ganze terranes, hosts important information in the tectonic evolution of the eastern Tibetan Plateau. However, its tectonic link with adjacent terranes and East Gondwana remains equivocal. Here, we present detrital zircon U-Pb-Hf isotope data from the upper Neoproterozoic-lower Paleozoic clastic rocks in the Yidun Terrane. The results show that detrital zircons from the Neoproterozoic rocks are mainly of ca. 821 – 890 Ma, 1714 – 1977 Ma, and 2317 – 2520 Ma, with ε<sub>Hf</sub>(t) values of each group comparable to coeval magmatic rocks in the nearby South China Block. This suggests that the Yidun Terrane and South China were possibly connected at that time, with the latter being the main detrital provenance. In contrast, the five Paleozoic samples have markedly different detrital zircon age spectra at ca. 2600 – 2300 Ma, 1100 – 900 Ma, 900 – 740 Ma, and 690 – 480 Ma, which were interpreted to have derived from Pan-African and Grenville-age provinces in the East Gondwana, as well as the South China Block and Songpan-Ganze Terrane. Such major provenance change suggests that after prolonged isolation in the Proto-Tethys, the Yidun Terrane began to collide with the East Gondwana in the early Paleozoic. Integrated with published works, we consider that the Yidun Terrane has close tectonic link with the Yangtze Block, and that it was located on the northeastern margin of the India Plate during the early Paleozoic.
DOI: 10.5281/zenodo.5495196
title: Development and Validation of a Self-Determination Theory-Based Measure of Motivation to Exercise and Diet in Children

description: Objective: To develop and test the factorial structure of a new self-determination theory–based measure of behavioral regulation in children.<br> Methods: Five hundred ninety 590 (F = 51.7%) children aged 7 to 11 years completed the Motivation to Exercise and Diet (MED-C) questionnaire, which comprises 16 items (eight for exercise and eight for diet) grouped into eight factors (five motivations and<br> three needs). Psychometric testing included confirmatory factor analysis and internal consistency. Measurement invariance analyses were also performed to evaluate whether the factorial structure of the MED-C was equivalent for gender (male vs. female), age<br> (&gt;9 vs. &lt;10 years), and the perception of having at least one parent with overweight or obesity (yes vs. no).<br> Results: Factorial analysis confirmed an acceptable factors solution for the MED-C and a good fit to the data for both the exercise and the diet subscales assessed independently. The maximal reliability coefficient revealed good reliability for the exercise<br> and the diet subscales. Moreover, the MED-C factor structure was invariant across group comparisons.<br> Discussion: Findings support the construct validity and reliability of the MEDC. Therefore, it represents the first validated instrument simultaneously measuring motivational regulation and psychological need satisfaction in the context of children’s exercise and diet. Considering the goodness of these results, scale percentile ranks of the total score distribution as well as the z score and the T score were provided for clinical and research purposes.<br> Conclusion: The MED-C might support the understanding of motivations and needs of children with weight problems and assist their process of behavioral change in primary and secondary prevention programs. Psychological factors represent, in fact, potential<br> targets for interventions to increase children’s motivation to exercise and diet.
DOI: 10.5281/zenodo.5495195
title: Development and Validation of a Self-Determination Theory-Based Measure of Motivation to Exercise and Diet in Children

description: Objective: To develop and test the factorial structure of a new self-determination theory–based measure of behavioral regulation in children.<br> Methods: Five hundred ninety 590 (F = 51.7%) children aged 7 to 11 years completed the Motivation to Exercise and Diet (MED-C) questionnaire, which comprises 16 items (eight for exercise and eight for diet) grouped into eight factors (five motivations and<br> three needs). Psychometric testing included confirmatory factor analysis and internal consistency. Measurement invariance analyses were also performed to evaluate whether the factorial structure of the MED-C was equivalent for gender (male vs. female), age<br> (&gt;9 vs. &lt;10 years), and the perception of having at least one parent with overweight or obesity (yes vs. no).<br> Results: Factorial analysis confirmed an acceptable factors solution for the MED-C and a good fit to the data for both the exercise and the diet subscales assessed independently. The maximal reliability coefficient revealed good reliability for the exercise<br> and the diet subscales. Moreover, the MED-C factor structure was invariant across group comparisons.<br> Discussion: Findings support the construct validity and reliability of the MEDC. Therefore, it represents the first validated instrument simultaneously measuring motivational regulation and psychological need satisfaction in the context of children’s exercise and diet. Considering the goodness of these results, scale percentile ranks of the total score distribution as well as the z score and the T score were provided for clinical and research purposes.<br> Conclusion: The MED-C might support the understanding of motivations and needs of children with weight problems and assist their process of behavioral change in primary and secondary prevention programs. Psychological factors represent, in fact, potential<br> targets for interventions to increase children’s motivation to exercise and diet.
DOI: 10.48370/ofd/t3fobg/xaqq0m
title: HMW_Nonea_pulla_(L.)_DC._H_07062.jpg

description: :unav
DOI: 10.48370/ofd/t3fobg
title: Zapłonka brunatna (Nonea pulla (L.) DC.), 7062

description: Herbarium
DOI: 10.6084/m9.figshare.14604780
title: Chromosome-scale reference genome assembly of a diploid potato clone derived from an elite variety

description: PacBio long reads, 10x Genomics (10xG) reads, and proximity-ligation scaffolding (Hi-C) were used to create the dAg1_v1.0 reference genome sequence.<br>The assembled genome sequence and the annotation files are here available.
DOI: 10.6084/m9.figshare.13661192
title: Maroochy estuary gas transfer velocity study

description: This dataset contains the data that support the findings in Rosentreter et al. 2021c "Divergent Gas Transfer Velocities of CO2, CH4 and N2O Over Spatial and Temporal Gradients in a Subtropical Estuary" in JGR:Biogeosciences
DOI: 10.34740/kaggle/dsv/2597423
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.5495194
title: Pyrrhura albipectus SPAdes preassembly

description: .
DOI: 10.5281/zenodo.5495193
title: Pyrrhura albipectus SPAdes preassembly

description: .
DOI: 10.6084/m9.figshare.9974357
title: Distributed coding of choice, action, and engagement across the mouse brain

description: Data from "Distributed coding of choice, action, and engagement across the mouse brain" by Nicholas A. Steinmetz, Peter Zatka-Haas, Matteo Carandini, Kenneth D. Harris, Nature 2019. https://doi.org/10.1038/s41586-019-1787-x<br><b>ONE interface</b><br><br><i>UPDATE: September 2nd, 2021. The ONE interface has been updated. Users of the previous version are invited to redownload the archive and follow the instructions below.</i><br>The data can be easily searched and loaded in Python using the ONE interface. The API may be installed via pip:<br><br>pip install ONE-api<br>Notes about the data format : https://github.com/nsteinme/steinmetz-et-al-2019/wiki/data-files<br>To search and download this dataset:<br>from one.api import Oneone = One(cache_dir='./9974357') # The location of the unarchived datasessions = one.search(dataset='trials') # search for all sessions that have a `trials` objectsession = sessions[0] # take the first sessiontrials = one.load_object(session, 'trials') # load the trials objectprint(trials.intervals) # trials is a Bunch, values are NumPy arrays or pandas DataFramesprint(trials.goCue_times)<br>For further documentation, see https://int-brain-lab.github.io/iblenv/03_one.html
DOI: 10.5281/zenodo.5484719
title: Infant Gray Matter Development

description: Source data associated with Infant gray matter development project
DOI: 10.5281/zenodo.5494482
title: Generated RGBD Tracking Benchmarks (LaSOT) Part 05

description: We convert the existing RGB tracking benchmarks, eg. LaSOT, to RGB+pseudo-Depth tracking benchmarks using DenseDepth or HighResDepth monocular depth estimation methods.
DOI: 10.5281/zenodo.5494481
title: Generated RGBD Tracking Benchmarks (LaSOT) Part 05

description: We convert the existing RGB tracking benchmarks, eg. LaSOT, to RGB+pseudo-Depth tracking benchmarks using DenseDepth or HighResDepth monocular depth estimation methods.
DOI: 10.5281/zenodo.5494485
title: Generated RGBD Tracking Benchmarks (LaSOT) Part 06

description: We convert the existing RGB tracking benchmarks, eg. LaSOT, to RGB+pseudo-Depth tracking benchmarks using DenseDepth or HighResDepth monocular depth estimation methods.
DOI: 10.5281/zenodo.5494484
title: Generated RGBD Tracking Benchmarks (LaSOT) Part 06

description: We convert the existing RGB tracking benchmarks, eg. LaSOT, to RGB+pseudo-Depth tracking benchmarks using DenseDepth or HighResDepth monocular depth estimation methods.