cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23183402.v1
title: Supplementary Material for: Clinicopathologic and prognostic study of hydroa vacciniforme-like lymphoproliferative diseases: A systematic review

description: Background: Limited clinicoprognostic data are available on hydroa vacciniforme (HV)-like lymphoproliferative diseases (HVLPD). Methods: This systematic review searched HVLPD reports in Medline via PubMed, Embase, Cochrane, and CINAHL databases in October 2020. Results: A total of 393 patients (65 classic HV, 328 severe HV/HV-like T-cell lymphoma [HVLL]) were analyzed. Among severe HV/HVLL cases, 56.0% were Asians, whereas 3.1% were Caucasians. Facial edema, hypersensitivity to mosquito bites, the onset of skin lesion and percentage of severe HV/HVLL differed significantly by race. Progression to systemic lymphoma was confirmed in 9.4% of HVLPD patients. Death occurred in 39.7% patients with severe HV/HVLL. Facial edema was the only risk factor associated with progression and overall survival. Mortality risk was higher in Latin Americans than in Asians and Caucasians. CD4/CD8 double-negativity was significantly associated with the worst prognosis and increased mortality. Conclusion: HVLPD is a heterogeneous entity with variable clinicopathologic features associated with genetic predispositions.
DOI: 10.6084/m9.figshare.24845358.v1
title: Supplementary Material for: Evaluation of clinical and machine data of critically ill adult COVID patients with AKI exposed to enhanced hemoadsorption during CRRT

description: Background: The FDA authorized the emergency use of enhanced hemoadsorption with oXiris in critically ill adult COVID patients with respiratory failure or severe disease to reduce inflammation. In this study, we evaluated critically ill adult COVID patients with acute kidney injury (AKI) who were exposed vs. not exposed to enhanced hemoadsorption with oXiris during continuous renal replacement therapy (CRRT). 
Methods: Retrospective cohort study of critically ill adult COVID patients with AKI requiring CRRT. Exposure to oXiris was defined as receiving oXiris for &gt;12 cumulative hours and more than one-third of the time within the first 72 hours of CRRT. Study outcomes included filter-specific performance metrics and clinical outcomes such as ventilator requirement, mortality, and dialysis dependence. Inverse probability treatment weighting was used to balance potential confounders in weighted regression models. 
Results: 14,043 hours of CRRT corresponding to 85 critically ill adult patients were analyzed. Among these, 2,736 hours corresponded to oXiris exposure (n=25 patients) and 11,307 hours to a standard CRRT filter (n=60 patients). Transmembrane pressures (TMP) increased rapidly and were overall higher with oXiris vs. standard filter, but filter life (median of 36.3 vs. 33.1 hours, p=0.913, respectively) and filter/clotting alarms remained similar in both groups. In adjusted models, oXiris exposure was not independently associated with the composite of hospital mortality and dialysis dependence at discharge (OR 2.13, 95% CI 0.98-4.82, p=0.06) but it was associated with fewer ventilator (β = -15.02, 95% CI -29.23 to -0.82, p=0.04) and ICU days (β = -14.74, -28.54 to -0.95, p=0.04) in survivors. 
Discussion/Conclusion: In critically ill adult COVID patients with AKI requiring CRRT, oXiris filters exhibited higher levels of TMP when compared to a standard CRRT filter, but no differences in filter life and filter/clotting alarm profiles were observed. The use of oXiris was not associated with improvement in clinical outcomes such as hospital mortality or dialysis dependence at discharge.
DOI: 10.6084/m9.figshare.28646498.v2
title: The gut microbiome

description: The gut microbiome
DOI: 10.17632/htw8ccwn7r
title: Thermal decomposition of combustible fraction of municipal solid waste

description: Thermogravimetric analysis (TGA) was conducted to investigate the thermal degradation behavior of the combustible fraction of municipal solid waste (CFMSW) over a temperature range of 30 °C to 900 °C under an inert atmosphere. Approximately 5-10 mg of CFMSW samples were subjected to controlled heating rates of 5, 10, 15,20, and 25 °C/min. The resulting mass loss data with respect to temperature has been compiled.
DOI: 10.17632/htw8ccwn7r.1
title: Thermal decomposition of combustible fraction of municipal solid waste

description: Thermogravimetric analysis (TGA) was conducted to investigate the thermal degradation behavior of the combustible fraction of municipal solid waste (CFMSW) over a temperature range of 30 °C to 900 °C under an inert atmosphere. Approximately 5-10 mg of CFMSW samples were subjected to controlled heating rates of 5, 10, 15,20, and 25 °C/min. The resulting mass loss data with respect to temperature has been compiled.
DOI: 10.6084/m9.figshare.1618856.v2
title: A Hidden Markov Model for Urban-scale Traffic estimation Using Floating Car Data

description: Urban-scale traffic monitoring plays a vital role in reducing traffic congestion. Owing to its low cost and wide coverage, floating car data (FCD) serves as a novel approach to collecting traffic data. However, sparse probe data represents the vast majority of the data available on arterial roads in most urban environments. In order to overcome the problem of data sparseness, this paper proposes a hidden Markov model (HMM)-based traffic estimation model, in which the traffic condition on a road segment is considered as a hidden state that can be estimated according to the conditions of road segments having similar traffic characteristics. An algorithm based on clustering and pattern mining rather than on adjacency relationships is proposed to find clusters with road segments having similar traffic characteristics. A multi-clustering strategy is adopted to achieve a trade-off between clustering accuracy and coverage. Finally, the proposed model is designed and implemented on the basis of a real-time algorithm. Results of experiments based on real FCD confirm the applicability, accuracy, and efficiency of the model. In addition, the results indicate that the model is practicable for traffic estimation on urban arterials and works well even when more than 70% of the probe data are missing.
DOI: 10.6084/m9.figshare.23796594.v2
title: Open Innovation Data.csvOpen Innovation Frameworks: A diagnostic analysis of deployment, engagement, evaluation, and governance of Open Innovation in SMEsOpen innovation frameworks: a diagnostic analysis of deployment, engagement, evaluation, and governance of open innovation in Small and medium-sized enterprises

description: The primary data from SMEs was gathered via a survey. SME managers who own or operate in the industries were the primary respondents, utilising a survey to gather primary data from SMEs
DOI: 10.6084/m9.figshare.25375153.v1
title: Supplementary Material for: Successful removal and replacement of a stuck hemodialysis catheter via thoracotomy: report of two cases and literature review

description: Introduction: Stuck tunneled central venous catheters (CVCs) have been increasingly reported. In rare cases, the impossibility of extracting the CVC from the central vein after regular traction is the result of rigid adhesions to the surrounding fibrin sheath. Forced traction during catheter removal can cause serious complications, including cardiac tamponade, hemothorax, and hemorrhagic shock. Knowledge and experience on how to properly manage the stuck catheter is still limited. 
Case presentation: Here, we present two cases that highlight the successful removal of the stuck tunneled CVC via thoracotomy through the close collaboration of multidisciplinary specialists in the best possible way. Both patients underwent an unsuccessful attempt at thrombolytic therapy with urokinase, catheter traction under the guidance of digital subtraction angiography (DSA) and intraluminal balloon dilation. And we reviewed the literature on stuck catheters in the hope of providing knowledge and effective approaches to attempted removal of stuck catheters. 
Conclusion: There is no standardized procedure for dealing with stuck catheters. Intraluminal PTA should be considered as the first line treatment, while open surgery represents a second option only in the event of failure. Care must be taken that forced extubation can cause patients life-threatening.
DOI: 10.6084/m9.figshare.12464396.v1
title: Sequencing data

description: Sequencing data of all treatments
DOI: 10.6084/m9.figshare.17128790.v1
title: Supplementary Material for: Treating Insomnia with High Risk of Depression Using Therapist-Guided Digital Cognitive, Behavioral, and Circadian Rhythm Support Interventions to Prevent Worsening of Depressive Symptoms: A Randomized Controlled Trial

description: <b><i>Introduction:</i></b> The global disease burden of major depressive disorder urgently requires prevention in high-risk individuals, such as recently discovered insomnia subtypes. Previous studies targeting insomnia with fully automated eHealth interventions to prevent depression are inconclusive: dropout was high and likely biased, and depressive symptoms in untreated participants on average improved rather than worsened. <b><i>Objective:</i></b> This randomized controlled trial aimed to efficiently prevent the worsening of depressive symptoms by selecting insomnia subtypes at high risk of depression for internet-based circadian rhythm support (CRS), cognitive behavioral therapy for insomnia (CBT-I), or their combination (CBT-I+CRS), with online therapist guidance to promote adherence. <b><i>Methods:</i></b> Participants with an insomnia disorder subtype conveying an increased risk of depression (<i>n</i> = 132) were randomized to no treatment (NT), CRS, CBT-I, or CBT-I+CRS. The Inventory of Depressive Symptomatology – Self Report (IDS-SR) was self-administered at baseline and at four follow-ups spanning 1 year. <b><i>Results:</i></b> Without treatment, depressive symptoms indeed worsened (<i>d</i> = 0.28, <i>p</i> = 0.041) in high-risk insomnia, but not in a reference group with low-risk insomnia. Therapist-guided CBT-I and CBT-I+CRS reduced IDS-SR ratings across all follow-up assessments (respectively, <i>d</i> = –0.80, <i>p</i> = 0.001; <i>d</i> = –0.95, <i>p</i> &lt; 0.001). Only CBT-I+CRS reduced the 1-year incidence of clinically meaningful worsening (<i>p</i> = 0.002). Dropout during therapist-guided interventions was very low (8%) compared to previous automated interventions (57–62%). <b><i>Conclusions:</i></b> The findings tentatively suggest that the efficiency of population-wide preventive strategies could benefit from the possibility to select insomnia subtypes at high risk of developing depression for therapist-guided digital CBT-I+CRS. This treatment may provide effective long-term prevention of worsening of depressive symptoms. <b><i>Trial registration:</i></b> the Netherlands Trial Register (NL7359).
DOI: 10.6084/m9.figshare.14305836.v1
title: Comparison of the Silica Fume Content for High-Strength Concrete Production: Chemical Analysis of the Pozzolanic Reaction and Physical Behavior by Particle Packing

description: Abstract Silica fume (SF) is the most commonly mineral admixture used for the production of high-strength concrete (HSC) due to its chemical characteristics of pozzolanic reactivity and physical filling effect. The objective of the present work is to compare the SF content by the chemical analysis of the pozzolanic reaction and the physical behavior by particle packing techniques. The first step of the study was to analyze the SF content to consume the calcium hydroxide (CH) produced during the hydration of Portland cement (PC), based on stoichiometric calculations. Then, the SF content for maximum packing density was obtained using analytical particle packing models and experimental tests. The compressive strength of the pastes was also measured. The results showed that the theoretical SF content for consuming CH is 15.6%, replacing PC. According to the packing density analytical models, the ideal SF content is 15% of the total fine materials. However, the experimental results indicated the use of a smaller SF content (10%). This difference between theoretical and experimental results is probably due to the high specific surface of the SF, which results in important surface forces between the grains, particle agglomeration and difficulty in SF densification with water.
DOI: 10.6084/m9.figshare.21624369.v1
title: Process-explicit simulations of European bison abundance in Eurasia from 21,000 years ago to 1500 CE

description: We simulated the abundance and range dynamics of the European bison in Eurasia from 21,000 years ago to 1500 CE using spatially explicit population models. We validated the models through rounds of pattern-oriented modelling to ensure that the models accurately replicated observed ecological patterns. These data represent a weighted mean of the best 25 models of European bison range dynamics selected by pattern-oriented modeling. <br> This multi-band raster has one layer for each 10-year timestep from 21,000 years ago to 1500 CE. Each layer is a spatially explicit representation of the European bison's range and abundance at that timestep. These are provided as GeoTIFF files in a Lambert Azimuthal Equal Area projection centred on a reference latitude of 57.5°N and a reference longitude of 25°E with a resolution of 86.6 by 75.6 km. <br> Grid cells with zero bison are potentially occupiable cells (not covered by ice sheets or ocean) with no bison occupancy. Grid cells marked NA are not valid occupiable cells at that time point, either because it is covered by glacial ice or because of the sea level.
DOI: 10.6084/m9.figshare.28794140.v1
title: Phenological responses to nitrogen enrichment regulate biomass accumulation of functional groups in an alpine meadow

description: Phenology is life-cycle events mediated by seasonal climate change, and its shift might play an important role in regulating biomass production. However, how vegetative and reproductive phenology responses to nitrogen (N) enrichment and precipitation changes, and how these responses further affect the biomass of functional groups and communities remain unclear. Thus, we conducted an experiment on N addition and precipitation changes for three consecutive years (2021-2023), in which we tracked vegetative and reproductive phenology of 55 species to determine the effects of shifts in phenological timing on biomass in an alpine meadow on the eastern Tibetan Plateau.
DOI: 10.6084/m9.figshare.7270940.v1
title: OSU Beach and Dune Survey Data from Oysterville, WA

description: Cross-shore transect data collected with backpack based real-time kinematic GPS was collected of the beach and dune at intervals of daily to ~quarterly as part of surveying efforts aimed at characterizing beach and dune evolution at Oysterville, WA.<br>Landscape measurements published here are in the form of cross-shore transects in XYZ format. The XYZ data represents point data in Washington State Plane South, with units of meters and a vertical datum of NAVD88 (m).The date of data collection described within the filename.
DOI: 10.6084/m9.figshare.1614828.v1
title: Hepatosomatic index & liver lipid composition of chondrichthyan fishes (compiled literature data) - Treberg & Speers-Roesch (2016) Does the physiology of chondrichthyan fishes constrain their distribution in the deep-sea? Journal of Experimental Biology

description: Supplementary compiled literature data (Excel format) for: Jason R. Treberg and Ben Speers-Roesch (2016) Does the physiology of chondrichthyan fishes constrain their distribution in the deep-sea? <i>Journal of Experimental Biology. </i>doi:10.1242/jeb.128108
DOI: 10.6084/m9.figshare.21310416.v1
title: Clinical genomics and precision medicine

description: Abstract Precision Medicine emerges from the genomic paradigm of health and disease. For precise molecular diagnoses of genetic diseases, we must analyze the Whole Exome (WES) or the Whole Genome (WGS). By not needing exon capture, WGS is more powerful to detect single nucleotide variants and copy number variants. In healthy individuals, we can observe monogenic highly penetrant variants, which may be causally responsible for diseases, and also susceptibility variants, associated with common polygenic diseases. But there is the major problem of penetrance. Thus, there is the question of whether it is worthwhile to perform WGS in all healthy individuals as a step towards Precision Medicine. The genetic architecture of disease is consistent with the fact that they are all polygenic. Moreover, ancestry adds another layer of complexity. We are now capable of obtaining Polygenic Risk Scores for all complex diseases using only data from new generation sequencing. Yet, review of available evidence does not at present favor the idea that WGS analyses are sufficiently developed to allow reliable predictions of the risk components for monogenic and polygenic hereditary diseases in healthy individuals. Probably, it is still better for WGS to remain reserved for the diagnosis of pathogenic variants of Mendelian diseases.
DOI: 10.6084/m9.figshare.21674543.v2
title: downy mildew on spinach chr3

description: spinach, downy mildew, disease resistance,molecular marker; breeding
DOI: 10.6084/m9.figshare.22273048.v2
title: Fast Fashion Tweets (Original Tweets and English Only)

description: Our cleaned dataset with id strings of tweets containing "fast fashion" with only original, English tweets for our Winter 2023 Digital Humanities 120: Social Media Data Analytics project at UCLA.
DOI: 10.5522/04/28507091.v1
title: Size distribution of MPs

description: Electrosprayed particles were collected on a microscope slide, cut, and mounted on aluminium SEM stubs using a double-sided carbon sticker (TAAB Laboratories, UK). These stubs were subsequently gold-coated to make the samples conductive for SEM (Thermo Scientific Phenom Pro G6 Desktop SEM). To verify the technique's reproducibility, the NPs were electrosprayed three times. ImageJ (NIH, USA) determined the particle size distribution by analysing three images with their “Analyse particle” functions and the size was determined from the measured NPs area. The dataset above shows the calculated diameter of the particles from the measured area.
DOI: 10.6084/m9.figshare.1552019.v1
title: Iris Dataset

description: Iris Dataset
DOI: 10.6084/m9.figshare.12047241.v1
title: Trade-off between gymnosperm resistance and resilience increases forest sensitivity to extreme drought

description: Raw datasets are available from public sources, which are used in the paper "Trade-off between gymnosperm resistance and resilience increases forest sensitivity to extreme drought".<br>The datasets include:raw data of tree-ring widths from https://www1.ncdc.noaa.gov/pub/data/paleo/treering/; the Climatic Research Unit (CRU), version TS 4.01 from https://crudata.uea.ac.uk/cru/data/hrg/; the gridded SPEI data (SPEIbase v2.5) from http://digital.csic.es/handle/10261/153475; the Regridded Harmonized World Soil Database v1.2 from https://daac.ornl.gov/SOILS/guides/HWSD.html; canopy height from https://webmap.ornl.gov/ogc/dataset.jsp?dg_id=10023_1; maximum rooting depth from https://wci.earth2observe.eu/thredds/catalog/usc/root-depth/catalog.html; wood density from https://datadryad.org/handle/10255/dryad.235; SLA, Nm, and Pm from https://github.com/abhirupdatta/global_maps_of_plant_traits; HSM and P50 from https://www.nature.com/articles/nature11688; isohydricity data from https://github.com/agkonings/isohydricity; tree density from https://elischolar.library.yale.edu/yale_fes_data/1/ ;above ground biomass of tropical forest plots from http://www.forestplots.net/data-packages/brienen-et-al-2015.<br>Please cite the corresponding papers correctly and follow the data usage license when using these datasets.
DOI: 10.6084/m9.figshare.27050509.v3
title: data and do file

description: Transparency is often advocated as a key strategy for increasing public trust in government, but empirical findings on its effectiveness remain inconclusive. By integrating an information processing perspective with transparency literature, this study argues that citizens interpret government information differently based on their media use patterns, partisan identity, and values, which in turn leads to varying effects of transparency on trust in government. Using individual-level survey data combined with provincial-level data from China, the study finds that transparency on provincial government websites is positively correlated with trust in local government. This positive effect is particularly pronounced among CCP members, individuals who frequently use traditional media, and those with stronger authoritarian values.
DOI: 10.6084/m9.figshare.28465673.v1
title: <b>appendixes and associative-connections</b>

description: <b>Appendixes.</b><br><b>Associative Connections from William Edward Lane’s ‘Arabic-English Lexicon’.</b>
DOI: 10.6084/m9.figshare.12445634.v1
title: Supplemental data for thesis

description: Supplemental data for thesis submitted to Cardiff University School of Biosciences:<br>Cepraga, A.A. (2020) "An investigation into Mef2-interacting proteins during embryonic muscle development of Drosophila"<br>Each file is provided twice: in a plain-text format such as .tsv , and as an Excel file. Note that .tsv files are tab-delimited. Make sure that they are not treated as space-delimited when imported in spreadsheet software to display them properly.<br>This repository contains:- Table S1: Raw spectral counts and hit ranking of all proteins identified by TAP/MS (total spectral counts for each protein identified by MS in tandem affinity purification from Drosophila embryos with Mef2 as the tagged bait)- Table S2: Mef2 GO biological process terms- Table S3: High-interest candidates identified by each analysis<br>- Table S4: Overlap of TAP datasets with muscleRNAi screen by Schnorrer et al 2010<br>- Data supplementals for individual figures. The file names indicate which figure the file corresponds to. Most of these report the IDs of genes in the different overlap fields of Venn diagrams. The dataset for Fig4.12 contains the functional similarity network including the pairwise functional similarity scores between the candidates.<br>- The file for Fig4.8 contains pmax for all candidates across embryonic stagings. The file for Fig4.10 contains GO enrichment for all Mef2 GO terms in each dataset and subset. These two files are in the appropriate format for use in the Morpheus matrix visualisation tool at https://software.broadinstitute.org/morpheus/ (Download the .gct files from here, open the Morpheus page, click "select file" and select the .gct file from your Downloads folder.)<br><br>- a Morpheus color scheme file to be used in conjunction with Fig4-10GOenrichment[...].gct. To apply the colour scheme, first download both the Fig4-10.gct and the color-scheme.json files. Open the Fig4-10.gct in Morpheus as described above. Click the Options button in the top-right corner (cogwheel symbol), which opens the Color scheme dialog. Scroll down to find the field "Saved color scheme" and select "My computer" from the dropdown box. Finally, click "Load color scheme" and select the downloaded .json file from your Downloads folder.<br>
DOI: 10.6084/m9.figshare.3520049.v1
title: Appendix F. Correlations among taxa using three methods to quantify logging and oil palm impacts.

description: Correlations among taxa using three methods to quantify logging and oil palm impacts.