cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc27xtqq
title: CCDC 2083284: Experimental Crystal Structure Determination

description: Related Article: Shiqun Xiang, Weibin Fan, Wei Zhang, Yinghua Li, Shiwei Guo, Deguang Huang|2021|Green Chemistry|23|7950|doi:10.1039/D1GC02303A
DOI: 10.25345/c5684n
title: MassIVE MSV000088245 - A BioID-derived proximity interactome for SARS-CoV-2 proteins
title: The novel coronavirus SARS-CoV-2 is responsible for the ongoing COVID-19 pandemic and has caused a major health and economic burden worldwide. Understanding how SARS-CoV-2 viral proteins behave in host cells can reveal underlying mechanisms of pathogenesis and assist in development of antiviral therapies. Here the cellular impact of expressing SARS-CoV-2 viral proteins was studied by global proteomic analysis and proximity biotinylation (BioID) was used to map the SARS-CoV-2 virus-host interactome in human lung cancer derived cells. Functional enrichment analyses revealed previously reported and unreported cellular pathways that are associated with SARS-CoV-2 proteins. We have also established a website to host the proteomic data to allow for public access and continued analysis of host-viral protein associations and whole-cell proteomes of cells expressing the viral-BioID fusion proteins. Furthermore, we identified 154 high-confidence interactions by comparing this study with previous reports, providing a strong foundation for future follow-up studies. Finally, we cross-referenced candidate interactors with the CLUE drug library to identify potential therapeutics for drug-repurposing efforts. Collectively, these studies provide a valuable resource to uncover novel SARS-CoV-2 biology and inform development of antivirals.
DOI: 10.5519/qd.ll585882
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1370 records)
DOI: 10.25345/c52g33
title: MassIVE MSV000088246 - GNPS - Mice neuronal culture C18-collected fractions
title: Primary mice neuronal cultures fractionated through C-18 RP chromatography. Collected fractions analyzed by untargeted LC-MS/MS in positive mode.
DOI: 10.5281/zenodo.5565710
title: MTSv: Rapid alignment-based taxonomic classification of metagenomic reads

description: Snakemake scripts for producing results described in publication. Jupyter notebook for producing figures. Sequencing reads from soil spike-in experiments. Raw data
DOI: 10.5281/zenodo.5115198
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Tim Adriaens, https://orcid.org/0000-0001-7268-4200. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.5094381
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Tim Adriaens, https://orcid.org/0000-0001-7268-4200. Claims were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.5576832
title: Trajectories and metadata for Bach et al.: 'Holistic re-evaluation of Southern Ocean Iron Fertilization for atmospheric CO2 removal'

description: Trajectory and metadata files from a Southern Ocean surface particle release experiment using Connectivity Modeling System (Paris et al. 2013, https://github.com/beatrixparis/connectivity-modeling-system) run offline in the MOM01 model (Stewart et al., 2017; Spence et al., 2017; Morrison et al., 2020), a global 0.1° ocean sea-ice model, based on version 5 of the Modular Ocean Model (MOM) code (mom-ocean.github.io) (Griffies, 2012). Here particle trajectories are are split into 28 netcdf files (numbered traj_file_01.nc through traj_file_28.nc), and uploaded altogether as a single .tar.gz compressed file. Metadata files are also uploaded containing information on the CMS setup and release locations. Netcdf files contain particle trajectory positions, along with temperature, salinity, status in or out of the mixed layer, release date, and particle exit status (see CMS user guide for details on trajectory files). Other CMS setup files included in each release directory are nest_1.nml, runconf.list, ibm.list, and releaseFile_matchtransport. These input files contain information needed to reproduce the experiment using the MOM01 model output, and are explained in detail in the CMS user guide. Citation of associated paper: Bach, L., V. Tamsitt, K. Baldry, J. McGee, E. Laurenceau-Cornec, R. Strzepek, Y. Xie, P. W. Boyd, 2021. Holistic re-evaluation of Southern Ocean Iron Fertilization for atmospheric CO<sub>2</sub> removal, <em>submitted </em> References: Griffies, S. M. (2012). Elements of the modular ocean model (MOM). <em>GFDL Ocean Group Tech. Rep</em>, 7(620), 47. Morrison, A. K., Hogg, A. M., England, M. H., & Spence, P. (2020). Warm Circumpolar Deep Water transport towards Antarctic driven by local dense water export in canyons. <em>Science Advances</em>, 6(18), eaav2516. Paris, C. B., Helgers, J., van Sebille, E., & Srinivasan, A. (2013). Connectivity Modeling System: A probabilistic modeling tool for the multi-scale tracking of biotic and abiotic variability in the ocean. <em>Environmental Modelling and Software</em>, 42, 47-54. Spence, P., Holmes, R. M., Hogg, A. M., Gries, S. M., Stewart, K. D., & England, M. H. (2017). Localized rapid warming of West Antarctic subsurface waters by remote winds. <em>Nature Climate Change</em>, 7(8), 595. Stewart, K., Hogg, A. M., Gries, S., Heerdegen, A., Ward, M., Spence, P., & England, M. H. (2017). Vertical resolution of baroclinic modes in global ocean models. <em>Ocean Modelling</em>, 113, 50-65.
DOI: 10.6084/m9.figshare.16823629.v3
title: The Correlation between Nidovirales and Coronavirus Disease 2019 (COVID-19)

description: The Correlation between Nidovirales and Coronavirus Disease 2019 (COVID-19) and the prevalence of Accession ID: EPI_ISL_2081021 and the result for comparison with reference selection: OC43/USA/VR759/2019 <br>
DOI: 10.5281/zenodo.5574643
title: Amorphophallus titanum decontaminated gx

description: .
DOI: 10.5281/zenodo.5574642
title: Amorphophallus titanum decontaminated gx

description: .
DOI: 10.6084/m9.figshare.15060138.v2
title: The Pandemic Experience Corpus (June - July 2020)

description: Datasets each containing responses in a different language:- English (EN.csv)- Japanese (JP.csv) + its English translation (JP2EN.csv)- Spanish (ES.csv) + its English translation (to be uploaded in the near future)<br>
DOI: 10.6084/m9.figshare.15060138.v3
title: The Pandemic Experience Corpus (June - July 2020)

description: Datasets each containing responses in a different language:- English (EN.csv)- Japanese (JP.csv) + its English translation (JP2EN.csv)- Spanish (ES.csv) + its English translation (ES2EN.csv)<br>
DOI: 10.5519/qd.dpzgni6t
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4923784 records)
DOI: 10.3886/e152762
title: Qualitative Transcripts for: “If we don’t do it, nobody is going to talk about it”: Indigenous Students Disrupting Latinidad at Hispanic Serving Institutions

description: These files contain the anonymized data files used for the paper: “If we don’t do it, nobody is going to talk about it”: Indigenous Students Disrupting Latinidad at Hispanic Serving Institutions<br><br>The abstract for the paper is found below:<br><br>Hispanic and Latinx are terms that conflate ethnicity, race, and nationality and complicate our ability to generalize what it means for Hispanic Serving Institutions (HSI) to serve such a diverse student population. Latinidad has also privileged mestizo narratives that obscure enduring colonialities of power and perpetuate the invisibility of Indigenous peoples. Conceptually framed by Critical Latinx Indigeneities, this study documents the testimonios of 10 Indigenous Mixtec/Ñuu Savi, Zapotec, and Nahua students at HSIs in California. I highlight issues of racialization and Indigenous misrepresentation within Latinx-centered curricula and programming and the ways participants engaged in fugitive acts of learning (Patel, 2016, 2019) to claim new forms of visibility on campus. The findings raise important implications for HSIs, including Latinx programming that disrupts colonial perspectives and more nuanced understandings of diasporic Indigeneity within Latinx communities.Hispanic and Latinx are terms that conflate ethnicity, race, and nationality and complicate our ability to generalize what it means for Hispanic Serving Institutions (HSI) to serve such a diverse student population. Latinidad has also privileged mestizo narratives that obscure enduring colonialities of power and perpetuate the invisibility of Indigenous peoples. Conceptually framed by Critical Latinx Indigeneities, this study documents the testimonios of 10 Indigenous Mixtec/Ñuu Savi, Zapotec, and Nahua students at HSIs in California. I highlight issues of racialization and Indigenous misrepresentation within Latinx-centered curricula and programming and the ways participants engaged in fugitive acts of learning (Patel, 2016, 2019) to claim new forms of visibility on campus. The findings raise important implications for HSIs, including Latinx programming that disrupts colonial perspectives and more nuanced understandings of diasporic Indigeneity within Latinx communities.
description: Network sampling
description: Persons who attended a Hispanic Serving Institution and self-identified as Ñuu Savi, Zapotec, or Nahua with ties to communities of origin in Oaxaca and Guerrero, Mexico. .
description: face-to-face interview; To preserve respondent anonymity, the primary investigator has omitted identifying text.<br>
DOI: 10.3886/e152762v1
title: Qualitative Transcripts for: “If we don’t do it, nobody is going to talk about it”: Indigenous Students Disrupting Latinidad at Hispanic Serving Institutions

description: These files contain the anonymized data files used for the paper: “If we don’t do it, nobody is going to talk about it”: Indigenous Students Disrupting Latinidad at Hispanic Serving Institutions<br><br>The abstract for the paper is found below:<br><br>Hispanic and Latinx are terms that conflate ethnicity, race, and nationality and complicate our ability to generalize what it means for Hispanic Serving Institutions (HSI) to serve such a diverse student population. Latinidad has also privileged mestizo narratives that obscure enduring colonialities of power and perpetuate the invisibility of Indigenous peoples. Conceptually framed by Critical Latinx Indigeneities, this study documents the testimonios of 10 Indigenous Mixtec/Ñuu Savi, Zapotec, and Nahua students at HSIs in California. I highlight issues of racialization and Indigenous misrepresentation within Latinx-centered curricula and programming and the ways participants engaged in fugitive acts of learning (Patel, 2016, 2019) to claim new forms of visibility on campus. The findings raise important implications for HSIs, including Latinx programming that disrupts colonial perspectives and more nuanced understandings of diasporic Indigeneity within Latinx communities.Hispanic and Latinx are terms that conflate ethnicity, race, and nationality and complicate our ability to generalize what it means for Hispanic Serving Institutions (HSI) to serve such a diverse student population. Latinidad has also privileged mestizo narratives that obscure enduring colonialities of power and perpetuate the invisibility of Indigenous peoples. Conceptually framed by Critical Latinx Indigeneities, this study documents the testimonios of 10 Indigenous Mixtec/Ñuu Savi, Zapotec, and Nahua students at HSIs in California. I highlight issues of racialization and Indigenous misrepresentation within Latinx-centered curricula and programming and the ways participants engaged in fugitive acts of learning (Patel, 2016, 2019) to claim new forms of visibility on campus. The findings raise important implications for HSIs, including Latinx programming that disrupts colonial perspectives and more nuanced understandings of diasporic Indigeneity within Latinx communities.
description: Network sampling
description: Persons who attended a Hispanic Serving Institution and self-identified as Ñuu Savi, Zapotec, or Nahua with ties to communities of origin in Oaxaca and Guerrero, Mexico. .
description: face-to-face interview; To preserve respondent anonymity, the primary investigator has omitted identifying text.<br>
DOI: 10.5281/zenodo.5576893
title: Low molecular weight seaweed–derived polysaccharides lead to increased faecal bulk but do not alter human gut health markers

description: Differential analysis of taxa before and after the consumption of either agar, alginate or maltodextrin showed no significant change at phylum or family level (<strong>Supplementary tables 1-2</strong>). <em>Supplementary Table 1: Differential abundance analysis with ALDEX2 on family level</em> <em>Supplementary Table 2: Differential abundance analysis with ALDEX2 on phylum level</em>
DOI: 10.5281/zenodo.5576892
title: Low molecular weight seaweed–derived polysaccharides lead to increased faecal bulk but do not alter human gut health markers

description: Differential analysis of taxa before and after the consumption of either agar, alginate or maltodextrin showed no significant change at phylum or family level (<strong>Supplementary tables 1-2</strong>). <em>Supplementary Table 1: Differential abundance analysis with ALDEX2 on family level</em> <em>Supplementary Table 2: Differential abundance analysis with ALDEX2 on phylum level</em>
DOI: 10.5517/ccdc.csd.cc29169w
title: CCDC 2116317: Experimental Crystal Structure Determination

description: Related Article: Qingqing Luo|2021|CSD Communication|||
DOI: 10.3886/e152821
title: Leveraging Integrated Student Support to Identify and Address COVID-19-related needs for Students, Families, and Teachers

description: The Center for Optimized Student Support at Boston College sought to examine the needs of students, teachers, school staff, and intervention personnel after March 2020 school closures related to the COVID-19 pandemic. The purpose of the study was to characterize stakeholder needs weekly, from March to June 2020, and to examine how schools that implemented an integrated student support intervention responded to those needs.
DOI: 10.6084/m9.figshare.16557825
title: supplementaries_ileum of calves

description: Ileal transcriptomic files<br>
DOI: 10.6084/m9.figshare.16557825.v1
title: supplementaries_ileum of calves

description: Ileal transcriptomic files<br>
DOI: 10.6084/m9.figshare.16821826
title: PST Test Data from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: Research data used for the problem-solving test
DOI: 10.6084/m9.figshare.16821829.v1
title: Animal Data from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: Research data for individual animals
DOI: 10.6084/m9.figshare.16821829
title: Animal Data from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: Research data for individual animals
DOI: 10.6084/m9.figshare.16821832
title: R script from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: R Code used for data analysis
DOI: 10.6084/m9.figshare.16821832.v1
title: R script from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: R Code used for data analysis
DOI: 10.6084/m9.figshare.16821838
title: ABT Test Data from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: Research data used for the detour test
DOI: 10.6084/m9.figshare.16737570
title: Data on grid cells variables; Spatial data on 5x5 degrees grid cells; Taxonomic and trait information for 6316 reef fish species; Data on fish spatial distribution; Detailed meta data from Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient

description: Cells_variables.csv; Grid_GASPAR_WGS84.shp; Fish_species_and_traits.csv; Distribution_fish.csv; metadata.csv
DOI: 10.6084/m9.figshare.16821838.v1
title: ABT Test Data from Performance of goats in a detour and a problem-solving test following long-term cognitive test exposure

description: Research data used for the detour test
DOI: 10.6084/m9.figshare.16737570.v2
title: Data on grid cells variables; Spatial data on 5x5 degrees grid cells; Taxonomic and trait information for 6316 reef fish species; Data on fish spatial distribution; Detailed meta data from Coral reef fishes reveal strong divergence in the prevalence of traits along the global diversity gradient

description: Cells_variables.csv; Grid_GASPAR_WGS84.shp; Fish_species_and_traits.csv; Distribution_fish.csv; metadata.csv
DOI: 10.6084/m9.figshare.16737570.v1
title: Data on grid cells variables; Spatial data on 5x5 degrees grid cells; Taxonomic and trait information for 6316 reef fish species; Dats on fish spatial distribution; Detailed meta data from Coral reef fishes reveal strong divergence in the prevalence of traits along with the global diversity gradient

description: Cells_variables.csv; Grid_GASPAR_WGS84.shp; Fish_species_and_traits.csv; Distribution_fish.csv; metadata.csv
DOI: 10.5281/zenodo.5575300
title: Wikidata Dump Countries_Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.5575299
title: Wikidata Dump Countries_Dump

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.6084/m9.figshare.16828948
title: High- and low-fitness MAGs from a longitudinal FMT study

description: 40 MAGs binned from co-assemblies of longitudinally-sampled gut metagenomes from fecal microbiota transplantation (FMT) donors. Affiliated with the following study: https://doi.org/10.1101/2021.03.02.433653<br>MAGs were labeled as "high-fitness" or "low-fitness" on the basis of their colonization ability and prevalence in global gut metagenomes, as described in the paper linked above.
DOI: 10.6084/m9.figshare.16828948.v1
title: High- and low-fitness MAGs from a longitudinal FMT study

description: 40 MAGs binned from co-assemblies of longitudinally-sampled gut metagenomes from fecal microbiota transplantation (FMT) donors. Affiliated with the following study: https://doi.org/10.1101/2021.03.02.433653<br>MAGs were labeled as "high-fitness" or "low-fitness" on the basis of their colonization ability and prevalence in global gut metagenomes, as described in the paper linked above.
DOI: 10.6084/m9.figshare.14044253.v1
title: Biomimetic Foot Exotendon Dataset

description: This dataset contains the data for the research article "Stiffening the human foot with a biomimetic exotendon". The dataset contains motion capture, force, and electromyography data. The dataset contains the data presented in the paper as well as the data of the individual participants in the study.
DOI: 10.6084/m9.figshare.16810463
title: All data relevant to the project as a csv file from Embryo movement is more frequent in avian brood parasites than birds with parental reproductive strategies

description: Movement of the embryo is essential for musculoskeletal development in vertebrates, yet little is known about whether, and why, species vary. Avian brood parasites exhibit feats of strength in early life as adaptations to exploit the hosts that rear them. We hypothesized that an increase in embryonic movement could allow brood parasites to develop the required musculature for these demands. We measured embryo movement across incubation for multiple brood-parasitic and non-parasitic bird species. Using a phylogenetically controlled analysis, we found that brood parasites exhibited significantly increased muscular movement during incubation compared to non-parasites. This suggests that increased embryo movement may facilitate the development of the stronger musculoskeletal system required for the demanding tasks undertaken by young brood parasites.
DOI: 10.6084/m9.figshare.16810463.v2
title: All data relevant to the project as a csv file from Embryo movement is more frequent in avian brood parasites than birds with parental reproductive strategies

description: Movement of the embryo is essential for musculoskeletal development in vertebrates, yet little is known about whether, and why, species vary. Avian brood parasites exhibit feats of strength in early life as adaptations to exploit the hosts that rear them. We hypothesized that an increase in embryonic movement could allow brood parasites to develop the required musculature for these demands. We measured embryo movement across incubation for multiple brood-parasitic and non-parasitic bird species. Using a phylogenetically controlled analysis, we found that brood parasites exhibited significantly increased muscular movement during incubation compared to non-parasites. This suggests that increased embryo movement may facilitate the development of the stronger musculoskeletal system required for the demanding tasks undertaken by young brood parasites.
DOI: 10.6084/m9.figshare.16810463.v1
title: All data relevant to the project as a csv file from Embryo movement is more frequent in avian brood parasites than birds with other reproductive strategies

description: Movement of the embryo is essential for musculoskeletal development in vertebrates, yet little is known about whether, and why, species vary. Avian brood parasites exhibit feats of strength in early life as adaptations to exploit the hosts that rear them. We hypothesized that an increase in embryonic movement could allow brood parasites to develop the required musculature for these demands. We measured embryo movement across incubation for multiple brood-parasitic and non-parasitic bird species. Using a phylogenetically controlled analysis, we found that brood parasites exhibited significantly increased muscular movement during incubation compared to non-parasites. This suggests that increased embryo movement may facilitate the development of the stronger musculoskeletal system required for the demanding tasks undertaken by young brood parasites.
DOI: 10.6084/m9.figshare.16823629.v4
title: The Correlation between Nidovirales and Coronavirus Disease 2019 (COVID-19) EPI_ISL_2081021 analyzed with OC43/USA/VR759/2019

description: The Correlation between Nidovirales and Coronavirus Disease 2019 (COVID-19) and the prevalence of Accession ID: EPI_ISL_2081021 and the result for comparison with reference selection: OC43/USA/VR759/2019 <br>
DOI: 10.6084/m9.figshare.14044253
title: Biomimetic Foot Exotendon Dataset

description: This dataset contains the data for the research article "Stiffening the human foot with a biomimetic exotendon". The dataset contains motion capture, force, and electromyography data. The dataset contains the data presented in the paper as well as the data of the individual participants in the study.<br>The dataset was generated using Matlab 2019a.
DOI: 10.6084/m9.figshare.14044253.v2
title: Biomimetic Foot Exotendon Dataset

description: This dataset contains the data for the research article "Stiffening the human foot with a biomimetic exotendon". The dataset contains motion capture, force, and electromyography data. The dataset contains the data presented in the paper as well as the data of the individual participants in the study.<br>The dataset was generated using Matlab 2019a.
DOI: 10.6084/m9.figshare.16829104
title: Additional file 1 of Classifying natural products from plants, fungi or bacteria using the COCONUT database and machine learning

description: Additional file 1. COCONUT entries for which a publication and an organism name were reported but not the corresponding taxonomical annotation as plant, fungi, or bacteria.