cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15151/esrf-es-1334969275
title: Speciation of neodynium in the rhizobacteria pseudomonas putida : focus on the influence of exposure media and Nd complexes with pyoverdine

description: With a predicted world population of over 9 billion people in 2050 and rapid economic growth, the pressure on natural resources is exponentially increasing. It is the case for critical metals, including Rare Earth Elements (REEs), that are the heart of a number of strategic technologies for the environmental transition. In this context, bio-inspired technologies could bring neat alternative to traditional pyro-metallurgy. Extraction strategies using bacterial proteins specific to REEs have recently emerge. This project aims to study the Nd complexes formed by molecules identified in the bacteria model Pseudomonas putida, such as periplasmic protein and siderophore.The second objective is to characterize Nd speciation in P. putida whole cells and compare it with the speciation of soluble proteins, with P. putida cultures performed in different media.This project should help to understand the implication of different ligands in REE behavior in P. putida.
DOI: 10.15151/esrf-es-1308374935
title: Quasi-static elastic domains in the quantum paraelectric phase of SrTiO3

description: In spite of a long history many electronic and lattice properties of the quantum paraelectric SrTiO3 remain puzzling. Last year we have discovered a novel ingredient that sets its ground state. We found that the softening of the TO mode is accompanied by a large TA softening at a tiny q-vector pointing to the existence of fluctuating domains as wide as 20 nm. Motivated by our results it has been proposed that quantum paraelectrics are driven by a flexo-electric coupling that leads to longrange-ordered modulated phase. Here we apply for five days of experiment on Cristal to study the diffuse scattering associated with this TA softening and its evolution in the ferroelectric phase of SrTiO3 (through the substitution with Ca doping). This result may reveal the presence of an hidden incommensurate transition in the quantum paraelectric phase of SrTiO3.
DOI: 10.15151/esrf-es-1330603467
title: IHR

description: IHR
DOI: 10.21335/nmdc-1815353537-2021710_p11(nleg38)
title: Bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) during Nansen Legacy cruise 2021710 (from August 23rd to September 25th in 2021) at station P11 (NLEG38) in the Arctic Ocean

description: This dataset is a collection of bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2021 Joint Cruise 2-2' cruise (2021710). The data are collected from CTD with Niskin bottles from station P11 (NLEG38) taken on 2021-09-17T07:51:29.904Z at 87.51233408333330N and -18.17952401666670E.
DOI: 10.21335/nmdc-1815353537-2021710_nleg40
title: Bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) during Nansen Legacy cruise 2021710 (from August 23rd to September 25th in 2021) at station NLEG40 in the Arctic Ocean

description: This dataset is a collection of bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2021 Joint Cruise 2-2' cruise (2021710). The data are collected from CTD with Niskin bottles from station NLEG40 taken on 2021-09-21T04:35:45.198Z at 83.85150280N and -9.536142783333330E.
DOI: 10.21335/nmdc-1815353537-2021710_nleg41
title: Bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) during Nansen Legacy cruise 2021710 (from August 23rd to September 25th in 2021) at station NLEG40 in the Arctic Ocean

description: This dataset is a collection of bacterial production measurements (rate of production of biomass expressed as carbon by prokaryotes [bacteria and archaea]) taken as part of the Nansen Legacy project (www.arvenetternansen.com), as part of the '2021 Joint Cruise 2-2' cruise (2021710). The data are collected from CTD with Niskin bottles from station NLEG41 taken on 2021-09-22T04:31:40.441Z at 83.154858850N and -9.604166983333330E.
DOI: 10.26179/7a0h-gt54
title: Accumulation Measurements from Pioneerskaya to Dome C, 1982-84
DOI: 10.6084/m9.figshare.23930172.v1
title: Data base of YKL-40 serum levels are predicted by inflammatory state, age and diagnosis of idiopathic inflammatory myopathies

description: Clinical, immunological and demographical features of our study group
DOI: 10.6084/m9.figshare.24190011
title: R code and data for wild plant study

description: The continental-scale contribution of wild plants to sequester stable soil carbon in agricultural lands
DOI: 10.6084/m9.figshare.24190011.v1
title: R code and data for wild plant study

description: The continental-scale contribution of wild plants to sequester stable soil carbon in agricultural lands
DOI: 10.25781/kaust-lwc2z
title: WinSyn: 2048px Crops

description: WinSyn is large dataset of architectural windows. This repository contains 72k crops of high resolution photos taken by contractors with professional cameras around the world. It contains images at 2048 x 2048px. Additional details and metadata are available from https://github.com/twak/winsyn_metadata
DOI: 10.4121/21944249.v2
title: Data underlying the publication: Forecasting estuarine salt intrusion in the Rhine-Meuse delta using an LSTM model

description: Raw and processed data used to build an LSTM model for salt intrusion at Krimpen aan den IJssel in the Rhine-Meuse delta.<br>Raw water data names are in all capitals and are formatted as VARIABLE_LOCATION_FIRSTYEAR_LASTYEAR_IDENTIFIER.csv<br>Variables used are:chloride concentration (CONCTTE)discharge (Q)water level (WATHTE)<br>Locations used are:Krimpen aan den IJssel (KRIMPADIJSL)Lekhaven(LEKHVRTOVER)Hagestein(HAGSBVN)Lobith(LOBH)Tiel(TIELWL)Dordrecht(DORDT)Hoek van Holland (HOEKVHLD)Vlaardingen(VLAARDGN)<br>All these data can also be downloaded from https://waterinfo.rws.nl/#!/nav/expert/. This can be done efficiently with the ddlpy software: https://github.com/openearth/ddlpy.<br>The file etmgeg_344.txt contains meteorological data mesured in Rotterdam by KNMI (https://www.knmi.nl/nederland-nu/klimatologie/daggegevens)<br>Features.csv contains daily minimum, mean and maximum values of the water data from Rijkswaterstaat and the wind data from KNMI.<br><br>
DOI: 10.6084/m9.figshare.24182520
title: Yeast RNA-seq data and transcriptome for kallisto-sleuth demo session

description: Paired-end RNA-seq data (indicated by <i>1</i> and <i>2</i> tags) for <i>Saccharomyces cerevisiae</i> under aerobic and anaerobic growth conditions. Each conditions consist of two replicates, as designated by <i>r1</i> and <i>r</i><i>2</i> tags.The reference transcriptome for <i>Saccharomyces cerevisiae</i> is also provided.For teaching students to run kallisto and sleuth pipeline.
DOI: 10.6084/m9.figshare.24182520.v1
title: Yeast RNA-seq data and transcriptome for kallisto-sleuth demo session

description: Paired-end RNA-seq data (indicated by <i>1</i> and <i>2</i> tags) for <i>Saccharomyces cerevisiae</i> under aerobic and anaerobic growth conditions. Each conditions consist of two replicates, as designated by <i>r1</i> and <i>r</i><i>2</i> tags.The reference transcriptome for <i>Saccharomyces cerevisiae</i> is also provided.For teaching students to run kallisto and sleuth pipeline.
DOI: 10.6084/m9.figshare.24190035
title: XBRL data

description: Experimental materials (ABR)
DOI: 10.6084/m9.figshare.24190053
title: Supplementary Material for: Two distinct characteristics of immune microenvironment in human hepatocellular carcinoma with Wnt/β-catenin mutations

description: Introduction Immunotherapy is becoming a promising approach for unresectable-hepatocellular carcinoma (HCC); the anti-tumor response is affected by the tumor microenvironment (TME). Although Wnt/β-catenin mutations are reported to cause non-inflamed phenotype, their role on TME remains controversial. We aimed to clarify the heterogeneity of immunophenotype in HCC with Wnt/β-catenin mutations. Methods This study includes 152 resected HCCs; mutations in the catenin beta-1, adenomatous polyposis coli, or AXIN1, or AXIN2 genes were defined as Wnt/β-catenin mutations. With hierarchical cluster analyses, TME were classified into inflamed or non-inflamed classes based on the gene expressions associated with T-cell activation. Expression profiles of molecules related to cell differentiation and biliary-stem cell markers were compared between the TME classes to investigate whether differences in tumor traits were associated with TME. Results Forty of 152 (26.3%) HCCs carried the Wnt/β-catenin mutations. Of these, 33 were classified as non-inflamed (33/40, 82.5%) and 7 as inflamed (7/40, 17.5%). Non-inflamed class was characterized by low number of CD3+, CD4+, and CD8+ cells on immunostaining, and high mRNA expressions of AXIN2 and GLUL, which are involved in the canonical Wnt/β-catenin signaling and hepatocyte differentiation, respectively. Non-inflamed tumors showed higher enhancement on the hepatobiliary-phase of gadolinium-ethoxybenzyl-diethylenetriamine (Gd-EOB-DTPA)-enhanced magnetic resonance imaging (MRI) compared to inflamed tumors. HCCs classified as inflamed class are revealed to have high numbers of CD3+, CD4+, and CD8+ tumor infiltrating lymphocytes on immunostaining. This class is associated with increased expression of anti-epithelial cell adhesion molecule (EpCAM) and FOXM1 accompanied by upregulation of genes related to interferon-gamma signaling, dendritic cell migration, regulatory T cells and MDSC activation and recognized as low enhancement nodule on Gd-EOB-DTPA-enhanced MRI. Conclusion Heterogeneity of tumor traits and TME was observed in HCC with Wnt/β-catenin mutation. The potential was indicated that tumor traits and TME are determined not only by the activation of the HNF4A but also by FOXM1, both of which are downstream transcription factor of the Wnt/β-catenin signaling pathway.
DOI: 10.6084/m9.figshare.24190053.v1
title: Supplementary Material for: Two distinct characteristics of immune microenvironment in human hepatocellular carcinoma with Wnt/β-catenin mutations

description: Introduction Immunotherapy is becoming a promising approach for unresectable-hepatocellular carcinoma (HCC); the anti-tumor response is affected by the tumor microenvironment (TME). Although Wnt/β-catenin mutations are reported to cause non-inflamed phenotype, their role on TME remains controversial. We aimed to clarify the heterogeneity of immunophenotype in HCC with Wnt/β-catenin mutations. Methods This study includes 152 resected HCCs; mutations in the catenin beta-1, adenomatous polyposis coli, or AXIN1, or AXIN2 genes were defined as Wnt/β-catenin mutations. With hierarchical cluster analyses, TME were classified into inflamed or non-inflamed classes based on the gene expressions associated with T-cell activation. Expression profiles of molecules related to cell differentiation and biliary-stem cell markers were compared between the TME classes to investigate whether differences in tumor traits were associated with TME. Results Forty of 152 (26.3%) HCCs carried the Wnt/β-catenin mutations. Of these, 33 were classified as non-inflamed (33/40, 82.5%) and 7 as inflamed (7/40, 17.5%). Non-inflamed class was characterized by low number of CD3+, CD4+, and CD8+ cells on immunostaining, and high mRNA expressions of AXIN2 and GLUL, which are involved in the canonical Wnt/β-catenin signaling and hepatocyte differentiation, respectively. Non-inflamed tumors showed higher enhancement on the hepatobiliary-phase of gadolinium-ethoxybenzyl-diethylenetriamine (Gd-EOB-DTPA)-enhanced magnetic resonance imaging (MRI) compared to inflamed tumors. HCCs classified as inflamed class are revealed to have high numbers of CD3+, CD4+, and CD8+ tumor infiltrating lymphocytes on immunostaining. This class is associated with increased expression of anti-epithelial cell adhesion molecule (EpCAM) and FOXM1 accompanied by upregulation of genes related to interferon-gamma signaling, dendritic cell migration, regulatory T cells and MDSC activation and recognized as low enhancement nodule on Gd-EOB-DTPA-enhanced MRI. Conclusion Heterogeneity of tumor traits and TME was observed in HCC with Wnt/β-catenin mutation. The potential was indicated that tumor traits and TME are determined not only by the activation of the HNF4A but also by FOXM1, both of which are downstream transcription factor of the Wnt/β-catenin signaling pathway.
DOI: 10.6084/m9.figshare.24190086
title: 2009-2022 Tengchong earthquake catalog

description: 2009-2022 Tengchong earthquake catalog
DOI: 10.6084/m9.figshare.24190086.v1
title: 2009-2022 Tengchong earthquake catalog

description: 2009-2022 Tengchong earthquake catalog
DOI: 10.18452/26730
title: On the simultaneous scattering of two photons by a single two-level atom

description: Diese Sammlung enthält die Daten, die in einem Experiment zur gleichzeitigen Streuung von zwei Photonen an einem Zwei-Niveau Atom verwendet wurden. Weitere Informationen finden Sie in der folgenden Publikation: [https://doi.org/10.1038/s41566-023-01260-7] [https://doi.org/10.48550/arXiv.2209.02547]
description: This repository contains the data used in an experiment concerning the simultaneous scattering of two photons by a single two-level atom. For more information, please see the following publication: [https://doi.org/10.1038/s41566-023-01260-7] [https://doi.org/10.48550/arXiv.2209.02547]
DOI: 10.25345/c5q23r97c
title: MassIVE MSV000092951 - Deciphering the Mechanistic Activity of Human Milk Oligosaccharides against Group B Streptococcus using Multi-omics Techniques
title: Human breast milk provides complete nutrition for the infant for up to six months of life. Human milk oligosaccharides (HMOs) are the third most abundant component of breast milk, yet do not provide any nutritional benefit to the infant. HMOs serve as antiadhesives, preventing pathogenic colonization while acting as prebiotics for commensal bacteria. Prior research indicates that HMOs are beneficial outside the infant gut, with demonstrations of antibiofilm and antimicrobial activity against a myriad of pathogens. One such opportunistic pathogen, Group B Streptococcus (GBS), is known to cause invasive infection leading to adverse pregnancy outcomes, such as preterm birth and sepsis. Patients carrying GBS during gestation are dosed with antibiotics during labor, but with high prevalence of antibiotic resistance, novel therapeutics are needed. Before HMOs could be considered for their therapeutic potential, their mechanism of action must be uncovered. To bridge this gap, we present the first culmination of multi-omics data using metabolomics, transcriptomics, and proteomics to reveal how GBS responds to HMO exposure. HMOs function by disturbing several pathways, with highest impact on cell membrane/wall composition and construction, virulence factor production, metabolism, and stress response. These broader -omics studies open the door to more specific assays, with a goal of elucidating the mechanism of action of HMOs against GBS.
DOI: 10.24378/exe.4824
title: Heat shock treatment for improving productivity and disease resistance in aquaculture (dataset)

description: Supplementary data for the Doctoral thesis "Heat shock treatment for improving productivity and disease resistance in aquaculture".
description: Supplementary data for thesis title Heat shock treatment for improving productivity and disease resistance in aquaculture.
description: The thesis associated with this dataset is located in ORE at: http://hdl.handle.net/10871/134053
DOI: 10.24378/exe.4844
title: Peatland restoration increases water storage and attenuates downstream stormflow but does not guarantee an immediate reversal of long-term ecohydrological degradation (dataset and analysis code)

description: This is the dataset used for the Gatis et al. (2023) article "Peatland restoration increases water storage and attenuates downstream stormflow but does not guarantee an immediate reversal of long-term ecohydrological degradation" published in Scientific Reports.
description: Before and after peatland restoration data - Water table depths, stage, discharge, water quality (DOC, absorption at 254nm, 400nm, 465nm, pH), CO2 fluxes, CH4 fluxes, soil temperature. All data saved as csv files. Code used for data analysis provided in R.
DOI: 10.5281/zenodo.8214754
title: Data from: Diversity of Andean shrubland puna butterflies of the genus Punargentus (Nymphalidae, Satyrinae, Satyrini, Pronophilina) with the description of two new species and two new subspecies

description: Two new species and two new subspecies of the satyrine butterfly genus <em>Punargentus </em>Heimlich – <em>P. atusparia </em>n. sp., <em>P. heimlichi </em>n. sp., <em>P. blanchardi libertas </em>n. ssp. and<em> P. atusparia yupania </em>n. ssp.<em> </em>– are described from north-central Peru (Áncash, Huánuco and La Libertad). The affinities of the new taxa are evaluated based on molecular data obtained by target enrichment and COI barcoding. <em>Punargentus </em>is fully supported and divides into two branches, <em>P. lamna </em>clade with four species, and <em>P. blanchardi </em>clade with three species, two of which described here. The species of the <em>P. blanchardi </em>clade occur in Andean shrubland, at 2800-3600 m, whereas those of <em>P. lamna </em>clade are found in puna grassland at 3600-4600 m, with occasional overlapping. Considered their habitat preference, none of the newly described species requires immediate conservation measures.
DOI: 10.5281/zenodo.8214753
title: Data from: Diversity of Andean shrubland puna butterflies of the genus Punargentus (Nymphalidae, Satyrinae, Satyrini, Pronophilina) with the description of two new species and two new subspecies

description: Two new species and two new subspecies of the satyrine butterfly genus <em>Punargentus </em>Heimlich – <em>P. atusparia </em>n. sp., <em>P. heimlichi </em>n. sp., <em>P. blanchardi libertas </em>n. ssp. and<em> P. atusparia yupania </em>n. ssp.<em> </em>– are described from north-central Peru (Áncash, Huánuco and La Libertad). The affinities of the new taxa are evaluated based on molecular data obtained by target enrichment and COI barcoding. <em>Punargentus </em>is fully supported and divides into two branches, <em>P. lamna </em>clade with four species, and <em>P. blanchardi </em>clade with three species, two of which described here. The species of the <em>P. blanchardi </em>clade occur in Andean shrubland, at 2800-3600 m, whereas those of <em>P. lamna </em>clade are found in puna grassland at 3600-4600 m, with occasional overlapping. Considered their habitat preference, none of the newly described species requires immediate conservation measures.
DOI: 10.26106/vngy-9551
title: Tunable Resistive Pulse Sensing results from the isolation of extracellular microvesicles in comparison with the theoretical model

description: The data include the size distribution and concentration of EVs were measured by TRPS technology using the qNano system (Izon Science Ltd.,. Oxford,. UK). The instrument was calibrated using CPC100 and CPC200 calibration particles (Izon Science) according to the manufacturer’s instructions. Exosomes were measured using NP100 nanopores (analysis range 50-330 nm; Izon Science) at a pressure of 5 mbar. Ectosomes were measured using NP200 nanopores (analysis range 85-500 nm; Izon Science) with a pressure of 1 mbar. Voltage and stretch were adjusted to obtain a stable current between 100-120 nA. The samples were analyzed for 3 minutes or until the measurement was performed on 500 objects. Data processing and analysis were prepared on the Izon Control Suite v2.2 software (Izon Science).||4 - Łączna liczba autorów publikacji
DOI: 10.5281/zenodo.8375014
title: ChatGPT impacts in programming education: A short list of input questions and output answers from ChatGTP

description: <strong>Five questions (in red) were addressed to ChatGTP ver3.5 between the period July 24<sup>th</sup> – July 28<sup>th</sup> 2023, in order to identify the opinion of ChatGTP in the field of computer science programming and programmers training. It is chosen to pose questions related to the main applications, advantages, disadvantages, future implications, and ethical considerations.</strong>
DOI: 10.5281/zenodo.8375013
title: ChatGPT impacts in programming education: A short list of input questions and output answers from ChatGTP

description: <strong>Five questions (in red) were addressed to ChatGTP ver3.5 between the period July 24<sup>th</sup> – July 28<sup>th</sup> 2023, in order to identify the opinion of ChatGTP in the field of computer science programming and programmers training. It is chosen to pose questions related to the main applications, advantages, disadvantages, future implications, and ethical considerations.</strong>
DOI: 10.5281/zenodo.8374942
title: Glacier D´ Arcouzan. 24-09-2023

description: Glacier D´ Arcouzan. 24-09-2023
DOI: 10.5281/zenodo.8374941
title: Glacier D´ Arcouzan. 24-09-2023

description: Glacier D´ Arcouzan. 24-09-2023
DOI: 10.6084/m9.figshare.24174522
title: oxWGBS

description: oxWGBS data
DOI: 10.6084/m9.figshare.24174522.v1
title: oxWGBS

description: oxWGBS data
DOI: 10.6084/m9.figshare.24190125
title: <b>Foliar herbivory modifies arbuscular mycorrhizal fungal colonization likely through altering root flavonoids</b>

description: Data associated with the manuscript.
DOI: 10.6084/m9.figshare.24190125.v1
title: <b>Foliar herbivory modifies arbuscular mycorrhizal fungal colonization likely through altering root flavonoids</b>

description: Data associated with the manuscript.
DOI: 10.17632/zj8sv73rxc.1
title: Regularised LEMUR simulator for deformation band study

description: Source code for LEMUR simulator with the reaction-diffusion regularisation. The simulator is developed based on MOOSE environment.
DOI: 10.17632/yv3v3rs88d.1
title: THE ICT COMPETENCY OF PRE-SERVICE TEACHER IN VIETNAM 

description: Using the Information and Communication Technology competency framework of UNESCO, the research surveyed 1698 4th-year pre-service teachers from 10 provinces in 3 regions of Vietnam
DOI: 10.17632/yv3v3rs88d.2
title: THE ICT COMPETENCY OF PRE-SERVICE TEACHER IN VIETNAM 

description: Using the Information and Communication Technology competency framework of UNESCO, the research surveyed 1698 4th-year pre-service teachers from 10 provinces in 3 regions of Vietnam.
DOI: 10.17632/nmyb6rsfwx.1
title: Dataset on the ICT application capacity in educational science research of pedagogical students in Vietnam

description: The data is collected to provide information about the ICT application capacity in educational research of pedagogical students in Vietnam and the factors affecting this capacity. The survey subjects were 2nd, 3rd, and 4th year pedagogical students from 6 universities offering undergraduate education in pedagogy in Vietnam, equally divided among 3 regions of Vietnam (North, Central and South Vietnam); in which 3 pedagogical schools, 3 multidisciplinary training schools.
DOI: 10.17632/nmyb6rsfwx.2
title: Dataset on the ICT application capacity in educational science research of pedagogical students in Vietnam

description: The data is collected to provide information about the ICT application capacity in educational research of pedagogical students in Vietnam and the factors affecting this capacity. The survey subjects were 2nd, 3rd, and 4th year pedagogical students from 6 universities offering undergraduate education in pedagogy in Vietnam, equally divided among 3 regions of Vietnam (North, Central and South Vietnam); in which 3 pedagogical schools, 3 multidisciplinary training schools.
DOI: 10.57841/casdc.0002522
title: 铁路车轴过盈配合面微动损伤分析及有限元仿真