cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.0ft1474/2
title: Data from unsprayed fields

description: Experimental data (egg predation) from unsprayed fields from season 2015/2016
DOI: 10.5061/dryad.0vh187j/1
title: Barmentlo ea, 2019, Data of- Environmental levels of neonicotinoids reduce prey consumption, mobility and emergence of Ischnura elegans

description: Experimental dataset accompanied with the experiments performed with the neonicotinoid thiacloprid and the damselfly Ischnura elegans.
DOI: 10.5061/dryad.16sf2d6/1
title: Podocarpus_cpDNA sequences_concatenated alignment

description: Data matrix of cpDNA sequences for the samples of the three species of Podocarpus studied, aligned and concatenated
DOI: 10.5061/dryad.1hk66gf/1
title: Lohmann_2019_dragonfly_pursuits

description: Smoothed and raw 3D locations of Erythemis simplicicollis dragonflies engaged in territorial pursuits
DOI: 10.5061/dryad.37jj6t9.1
title: Data from: Total-evidence approach reveals an extinct lineage of Paederinae rove beetles from Cretaceous Burmese amber
DOI: 10.5061/dryad.37jj6t9.1/14.1
title: Appendix S1

description: Appendix S1. Pieces of Burmese amber with inclusions of the studied specimens of Diminudon gen. nov. An insect pin head used as a scale. Scale bar represents 1 mm.
DOI: 10.5061/dryad.37jj6t9.1/15.1
title: Appendix S2

description: Appendix S2. List of morphological characters.
DOI: 10.5061/dryad.37jj6t9.1/16.1
title: Appendix S3

description: Appendix S3. Matrix of morphological characters.
DOI: 10.5061/dryad.37jj6t9.1/17.1
title: Appendix S4

description: Appendix S4. Complete primer details.
DOI: 10.5061/dryad.37jj6t9.1/18.1
title: Appendix S5

description: Appendix S5. GenBank accession numbers of all sequences.
DOI: 10.5061/dryad.37jj6t9.1/19.1
title: Appendix S6

description: Appendix S6. The trees resulting from the analysis of morphological data. Strict consensus tree of the four most parsimonous trees; numbers at nodes represent bootstrap supports (A); Fifty per cent majority rule consensus tree from Bayesian analysis; numbers at nodes represent posterior probabilities (B).
DOI: 10.5061/dryad.37jj6t9.2/19.2
title: Appendix S6

description: Appendix S6. The trees resulting from the analysis of morphological data. Strict consensus tree of the four most parsimonous trees; numbers at nodes represent bootstrap supports (A); Fifty per cent majority rule consensus tree from Bayesian analysis; numbers at nodes represent posterior probabilities (B).
DOI: 10.5061/dryad.37jj6t9.2/20.2
title: Appendix S7

description: Appendix S7. The trees resulting from the analysis of molecular data. Strict consensus tree of the two most parsimonous trees; numbers at nodes represent bootstrap supports (A); Fifty per cent majority rule consensus tree from Bayesian analysis; numbers at nodes represent posterior probabilities (B).
DOI: 10.5061/dryad.37qc017/1
title: Collated and georeferenced GCFR soil data

description: Soil chemical data for the Greater Cape Floristic Region (GCFR) collated from sources and geo-referenced. The variables in this file include the latitude and longitude of each point, the pH measured in water (pH_H2O), pH measured in extracts (pH_extract, mostly 1 M KCl), Cation exchange capacity (CEC; cmol(+)/kg; H+ (cmol(+)/kg), Total exchangeable cations (cmol(+)/kg), Extractable K (cmol(+)/kg), Extractable Na (cmol(+)/kg), Extractable P (mg/kg), total P (mg/kg), Organic C (%), total C(%) and total N(%).
DOI: 10.5061/dryad.37qc017/2
title: GCFR soil pH

description: pH values were obtained from collated data and also AFSP. Data from pH measured in water were corrected to KCl extract values using linear regression of known KCL and water extracts. The raster layer represents the modeled interpolation of this pH (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.3b025hh/14
title: Supplementary file 3

description: List of fibrosis markers from CTD
DOI: 10.5061/dryad.3b025hh/15
title: Supplementary file 4

description: Balance of Myc and Mxd1
DOI: 10.5061/dryad.3b025hh/16
title: Supplementary file 5

description: Connectivity patterns for TFs
DOI: 10.5061/dryad.3b025hh/18
title: Supplementary file 6

description: Venn diagrams for sets of genes connected with selected TFs for the NM-401, NRCWE-26 and BLM GRNs
DOI: 10.5061/dryad.5b2m501/1
title: SCN_genome.fa.tar.gz

description: The genome file of Heterodera glycines.
DOI: 10.5061/dryad.5b2m501/2
title: repeat_annotation.gff.tar.gz

description: The repeats annotation file of Heterodera glycines.
DOI: 10.5061/dryad.5b2m501/3
title: ncRNA.gff3.tar.gz

description: The ncRNA annotation file of Heterodera glycines.
DOI: 10.5061/dryad.5b2m501/4
title: pasa2.longest.filter.gff3.tar.gz

description: the gff3 file of Heterodera glycines.
DOI: 10.5061/dryad.5b2m501/5
title: pasa2.longest.filter.cds.tar.gz

description: The CDS sequence file of Heterodera glycines.
DOI: 10.5061/dryad.5b2m501/6
title: pasa2.longest.filter.pep.tar.gz

description: The protein sequence file of Heterodera glycines.
DOI: 10.5061/dryad.6ts275n/1
title: Raw pollinator and pollen transport data

description: Raw, unprocessed data on individual insects sampled in light traps and pollen transport sampled from those insects.
DOI: 10.5061/dryad.6ts275n/2
title: Raw plant transect data

description: Raw, unprocessed data on floral abundance sampled during transects.
DOI: 10.5061/dryad.6ts275n/3
title: Pollen transport matrix

description: Pollinator and pollen transport data, wrangled into matrix format for ease of analysis.
DOI: 10.5061/dryad.6ts275n/4
title: Floral abundance matrix

description: Floral abundance data, wrangled into matrix format for ease of analysis.
DOI: 10.5061/dryad.6ts275n/5
title: Plant species metadata

description: Metadata for all plant species detected on floral transects or in pollen analysis, listed family-level taxonomy and growth strategy (i.e. annual, perennial etc.).
DOI: 10.5061/dryad.89s4n70/1
title: Supplemental Dataset 1

description: Supplemental Dataset 1: Resident organelle proteomes from LOPIT experiments (Fig. 2, S1) after SVM-based classification. Proteins are identified by their AGI accession code for the TAIR database. Proteins annotated with an 'x' formed the training datasets used for SVM classification and those annotated as '-' were newly classified as organelle residents. Classification thresholds and SVM parameters were as described in Experimental Procedures.
DOI: 10.5061/dryad.89s4n70/2
title: Supplemental Dataset 2

description: Supplemental Dataset 2. Additional information for monoclonal antibodies, polysaccharide epitopes and protein targets featured in Fig. 3. Antibody names in column A refer to antibodies featured in Fig. 3a, b, and c. For each antibody the original publication reference (column B), epitope strucutre (column C) and polysaccaride containing that epitope (column D) is given. Group members (Fig. 3c) are detailed in column F. For peptide markers assayed in Fig. 3e, localization and relevant localization references are supplied in columns H-J.
DOI: 10.5061/dryad.89s4n70/3
title: Supplemental Dataset 3

description: Supplemental Dataset 3. Protein lists for sub-Golgi proteomes.  Proteins (column A) are annotated with sub-Golgi classification (column B) , MapMan functional classifications (column D) and gene descriptions (column E). 'x' (column C) denotes which proteins formed the SVM training set shown in Fig. 4c that was used in the final classification in Fig. 4d. Proteins were annotated with functional categorization and gene descriptions using the MapMan tool (http://mapman.gabipd.org/mapman). Peptide spectral matches, averaged from replicates, give an overview of protein abundance columns G - J). Further quantitative information is available at the ProteomeXchange Consortium via the PRIDE partner repository (PXD004596, PXD009978).
DOI: 10.5061/dryad.89s4n70/40
title: Supplemental_Dataset_4_part1of3

description: Image regions analyzed in Figure 5C
DOI: 10.5061/dryad.89s4n70/41
title: Supplemental_Dataset_S4_part2of3

description: Image regions analyzed in Figure 5C
DOI: 10.5061/dryad.97q0n06/6
title: DNA barcoding data

description: Seed-deposition samples (bird droppings with seeds, defecated or regurgitated) analysed through DNA barcoding to identify the bird species responsible of seed dispersal events. Disperser identifications are classified as Sardinian warbler (Sylvia melanocephala) versus other bird species. Only those samples that were dispersed by Sardinian warblers (i.e. the ones used in this study) include fields for sequence, sequence length and source of barcoding identification.
DOI: 10.5061/dryad.c56kb12/1
title: stoneflies_GBS1-master (4)

description: Detailed SNP calling procedures and processed genotypes.
DOI: 10.5061/dryad.j15b535/1
title: COORDINATES

description: Coordinates of each male's home range size gathered during the mapping season. Coordinates where used to create the MCP an Kernel polygons using the R packages mentioned in the article.
DOI: 10.5061/dryad.j15b535/2
title: Physical condition

description: Morphological measures of 12 males used for calculating the real mass index. Raw mass, wing and tarsus length
DOI: 10.5061/dryad.k2d45c2/1
title: N, S, H and functional community composition variables

description: N, S and H variables as well as CWMs and SDs of functional traits - related to resource use specialisation, mobility and thermophily - of sampled butterfly and macro-moth communities, and their respective site-specific urbanisation (BUC) values at seven spatial scales.
DOI: 10.5061/dryad.k3c78v7/1
title: Mycorrhizal fungal mycelium - carbon use efficiency

description: Data on respiration, carbon use efficiency, mycelial biomass, mycelial production, gross primary production and sporocarp production. Biomass estimates are based on amounts of ergosterol (a fungal-specific biomass marker), quantified using liquid chromatography. Growth estimates are derived from  biomass estimates and mathematical models.  Estimates of carbon use efficiency are based on growth and respiration estimates. Gross primary production estimates are based on eddy covariance flux measurements.
DOI: 10.5061/dryad.m2mf542/1
title: Dataset_seeds_dispersed

description: Here we provided data on seed dispersal by six wild groups of brown howler monkeys (Alouatta guariba clamitans). This research was conducted during a 36-month period in three small (&lt;10 ha: S1, S2, and S3) and three large (&gt;90 ha: L1,L2, and L3) Atlantic forest fragments in Rio Grande do Sul State, southern Brazil.
DOI: 10.5061/dryad.m2mf542/2
title: Dataset_seed_handling

description: Here we provided data on seed/fruit handling by six wild groups of brown howler monkeys (Alouatta guariba clamitans). This research was conducted during a 36-month period in three small (&lt;10 ha: S1, S2, and S3) and three large (&gt;90 ha: L1,L2, and L3) Atlantic forest fragments in Rio Grande do Sul State, southern Brazil.
DOI: 10.5061/dryad.m644b82/2
title: data Oda et al.xlsx

description: dataset-file
DOI: 10.5061/dryad.rt535m8/1
title: Schlagel_et_al_2019_interaction_method_vole_data

description: Bank vole (Myodes glareolus) movement data obtained from an automatic radio-telemetry (ART) system near Potsdam, Germany. Bank voles were caught in the field and released, in groups of 4 ("replicates"), into large outdoor enclosures (50 x 50 m). Data spans 3-5 days for individual replicates and has a temporal resolution of 6 minutes. Additional information available for each individual is its sex.
DOI: 10.5061/dryad.rt535m8/2
title: Schlaegel_et_al_2019_interaction_method_R_code

description: Zip archive comprising 3 files: (1) simulated movement data of two individuals that are attracted to each other, (2) R script for performing the analysis (estimating occurrences and performing step-selection analysis to estimate attraction-avoidance-neutrality) using package "amt", (3) documentation with output from the R script.
DOI: 10.5061/dryad.sm6jb0p/15
title: Data_S16_Gene_Trees_Dib_Gekkota_not_mono_ASTRAL_tree

description: ASTRAL III tree generated from IQ Trees not showing Dibamidae and Gekkota as monophyletic
DOI: 10.5061/dryad.th8334d/5
title: Transcriptome and Expression Data

description: Data associated with the transcriptome and expression analyses including the de novo Trinity assembly, reference files, read counts, and results summary table in excel format.
DOI: 10.5061/dryad.v815n58/10
title: iEEG analysis helper functions

description: These functions rely not only on external R packages [all on CRAN except rutabaga, devtools::install_github('dipterix/rutabaga')], but also the AFNI suite of tools for exporting data in the .niml.dset format so they may be viewed in SUMA. The dependency on AFNI is purely graphical and is not necessary to produce the numeric results of the paper.
DOI: 10.5061/dryad.v815n58/6
title: Statistical power simulation (behavior)
DOI: 10.5061/dryad.v815n58/7
title: iEEG data

description: The broadband high-frequency activity (75-150Hz) is stored in the column labelled "y". Time is relative to the onset of the auditory stimulus. The data are already baseline corrected and trial-outliers have been rejected, wherefore some trial numbers are skipped.
DOI: 10.5061/dryad.v815n58/8
title: Per-electrode summary statistics

description: Used primarily for electrode selection (which electrodes responded to the experimental stimuli).
DOI: 10.5061/dryad.v815n58/9
title: Analysis code for the iEEG data
DOI: 10.17632/5nggj6mbxp.1
title: Data for: Could nature help children rise out of poverty? Green space and future earnings from a cohort in ten U.S. cities

description: Data accompanying paper submitted to Environmental Research titled Could nature help children rise out of poverty? Green space and future earnings from a cohort in ten U.S. cities. The abstract follows: BACKGROUND: Growing up in poverty is associated with poor health, and the American Dream of upward mobility is becoming an illusion for many low-income children. But nearby green space can support academic achievement, creativity, and emotional regulation, and these traits might help low-income children rise out of poverty. OBJECTIVES: To examine the relationship between recent incomes of children born between 1978 and 1982 in the 10 largest U.S. cities and density of green space they were exposed to during childhood. METHODS: We calculate park proximity, park acreage, new park development, and greenness for 1980-1990 using Normalized Difference Vegetation Index (NDVI) from Landsat imagery and Trust for Public Land geospatial files. We obtain the 2014 income for children born between 1978 and 1982 into families in poverty from The Opportunity Atlas cohort, aggregated at the tract level. RESULTS: Conditional autoregressive (CAR) models of tracts in the ten largest U.S. cities (n = 5,849) show statistically significant positive weak associations between income rank and above-average levels of greenness but not between income rank and park measures, adjusting for individual and neighborhood confounders and spatial autocorrelation. Tracts with lower average levels of precipitation (city-level), lower disadvantage, higher levels of population density, or higher annual temperatures do not show beneficial effects of green space. CONCLUSIONS: Greenness may be weakly associated with children rising out of poverty in wetter, cooler, less-dense, more advantaged census tracts of 10 U.S. cities.
DOI: 10.17632/kzj2c23frp.1
title: The 2010 Ethnic Minority British Election Study

description: The 2010 Ethnic Minority British Election Study. Face to face survey conducted in 2010 including samples of Britain's largest ethnic minority groups; Indian, Pakistani, Bangladeshi, African and Caribbean (combined n=2,787)
DOI: 10.17632/n4rwdf6k27.1
title: Data for: Two new alkaloids isolated from Traditional Chinese Medicine Binglang the fruit of Areca catechu

description: supplementary materials
DOI: 10.17632/nwdhf5b9bg.1
title: Data for: QTAIM for photovoltaics

description: Predicted promising benzothiadiazole dyes, computed QTAIM electronic properties influencing photovoltaics (charges of the N2 and N5 atomic basins (QN2 and QN5) of the BTD system, the ratio of sulfur sixth-order electron overlaps to the sulfur isodensity surface area - Ro6S_SS, the ratio of the summary isodensity surface area of hydrogens to the summary volume of hydrogens - SH_VH) and expected photovoltaic performances of DSSCs (Jsc, Voc, η). Recommended fabrication details: 0.1 m LiI, 0.05 m I2, 0.6 m DMPII (or DMII, BMII, PMII), and 0.5 m TBP in dehydrated acetonitrile, the TiO2 photoelectrode soaked in the 0.3 mM dye solutions during 24 hours, the use of CDCA (least 10 mM and higher); the use of alcohols or binary alcohols containing solvents (CHCl3:C2H5OH, acetonitrile:CH3OH, acetonitrile:tBuOH) for the photoelectrode immersion in the dye solution. GuNCS has a positive effect on the performances.
DOI: 10.17632/t5bz3np25k.1
title: British Election Study Wave 13

description: Wave 13 of the British Election Study Online Panel. Nationally representative longitudinal study of the political attitudes and behaviour of British voters. This survey has a sample size of n=31,196 respondents, and was conducted online in June 2017.
DOI: 10.17632/tnnh5d3hhv.1
title: Data for: Predicting outcome in patients admitted with chronic subdural hematomas

description: Exel data sheet chronic subdural hematomas
DOI: 10.5061/dryad.0ft1474/3
title: Data from camera recordings

description: Pest egg removal data recorded by digital cameras, season 2016/2017.
DOI: 10.5061/dryad.0ft1474/4
title: Pitfall data 2015_2016

description: Pitfall data, season 2015/2016
DOI: 10.5061/dryad.0ft1474/5
title: Pitfall data 2016_2017

description: Pitfall data, season 2016/2017
DOI: 10.5061/dryad.27jp751/1
title: Genotype files

description: nSSR genotype files
DOI: 10.5061/dryad.37jj6t9.1/20.1
title: Appendix S7

description: Appendix S7. The trees resulting from the analysis of molecular data. Strict consensus tree of the two most parsimonous trees; numbers at nodes represent bootstrap supports (A); Fifty per cent majority rule consensus tree from Bayesian analysis; numbers at nodes represent posterior probabilities (B).
DOI: 10.5061/dryad.37qc017/3
title: GCFR soil electrical conductivity (EC, mS/m)

description: The raster layer represents the modeled interpolation of electrical conductivity (EC) (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are mS/m. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.37qc017/4
title: GCFR soil extractable K (cmol(+)/kg)

description: The raster layer represents the modeled interpolation of extractable K (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are cmol(+)/kg soil. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.37qc017/5
title: GCFR soil extractable Na (cmol(+)/kg)

description: The raster layer represents the modeled interpolation of extractable Na (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are cmol(+)/kg soil. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.37qc017/6
title: GCFR soil extractable P (mg/kg)

description: The raster layer represents the modeled interpolation of extractable P (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are mg/kg soil. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.37qc017/7
title: GCFR soil total C (%)

description: The raster layer represents the modeled interpolation of total C (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are % (w/w) soil. Note that there are some voids (NA values) within the geographic area modeled. Total C includes organic and inorganic C.
DOI: 10.5061/dryad.37qc017/8
title: GCFR soil total N (%)

description: The raster layer represents the modeled interpolation of total N (CRS EPSG:4326 - WGS 84 - Geographic) in GeoTIFF format. Units are % (w/w) soil. Note that there are some voids (NA values) within the geographic area modeled.
DOI: 10.5061/dryad.3jk4mj2/1
title: Raw data of miR-137 Tg mice

description: miR-137 Tg mice data.
DOI: 10.5061/dryad.3jm85gq/1
title: data_PCs_Dryad1

description: This is the dataset of the manuscript entitled "Disparity in preemptive end-of-life conversation experience caused by subjective economic status among general Japanese elderly people: a cross-sectional study with stratified random sampling," accepted on BMJ Open.
DOI: 10.5061/dryad.3jt83k4/1
title: Dataset S1

description: DNA sequence alignment for the concatenated dataset with three genes in nexus format.
DOI: 10.5061/dryad.3jt83k4/2
title: Dataset S2

description: Input file for Bayesian inference (BI) analyses of the concatenated dataset in nexus format.
DOI: 10.5061/dryad.3jt83k4/3
title: Dataset S3

description: Input file for Mesquite analysis in nexus format.
DOI: 10.5061/dryad.58qg7ct/1
title: bammfiles

description: This .zip file contains BAMM control files and BAMM output files relevant to the character-independent BAMM analyses reported in the supplemental information. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/2
title: character.datafiles

description: This .zip file contains text files of character codings for each species, used as input in RevBayes analyses and FiSSE analyses. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/3
title: phylip.datafiles

description: This .zip file contains the Phylip files of aligned sequence data for the full set of species and the set of crown clade species. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.58qg7ct/4
title: revbayes.outputfiles

description: This .zip file contains output files of all RevBayes analyses. Included is a readme file that describes individual files.
DOI: 10.5061/dryad.6ts275n/6
title: Moth species metadata

description: Metadata for all moth species identified in the study, listing family-level taxonomy and resolution of ID.
DOI: 10.5061/dryad.6ts275n/7
title: Coordinates

description: Geographic locations of field sampling plots.
DOI: 10.5061/dryad.6ts275n/8
title: Season order

description: Metadata file listing the nine sampling seasons by name and giving their correct chronological order.
DOI: 10.5061/dryad.6ts275n/9
title: Trap times

description: Metadata file giving the time of day (in decimal hours) at which light traps were turned on and off during each sampling session.
DOI: 10.5061/dryad.89s4n70/4
title: Supplemental_Dataset_S4_part3of3

description: Image regions analyzed in Figure 5C
DOI: 10.5061/dryad.8j3f4rh/1
title: Temperature data for four thermal landscapes from the adjustable temperature array equipment.

description: Temperature data collected to validate adjustable temperature array's performance. This data was analyzed to interpret how accurate and precise our equipment is.
DOI: 10.5061/dryad.8j3f4rh/2
title: Temperature data for variation within vials placed in adjustable temperature arrays.

description: Temperature data collected at the bottom and top of vials when placed in an adjustable temperature array for multiple experimental setups. Supplementary Information 5.
DOI: 10.5061/dryad.8j3f4rh/3
title: R script for performing validation test analyses.

description: R script describes validation test analyses, plots, and analysis on the temperature variation within vials for the manuscript.
DOI: 10.5061/dryad.8mb0c27/1
title: Plant Phenotypic Data for Transplant Year 1

description: These data were collected in the field in year 1 of the transplant experiment (2015-2016). Variable definitions are in the readme file.
DOI: 10.5061/dryad.b5n8220/1
title: Encounter histories for survival model

description: Contains capture-mark-recapture data, in the form of encounter histories (including information about the state (area) at encounter) over the period 1995-2015 for common guillemots/murres Uria aalge, marked on Kalken in the Stockholm archipelago, Baltic Sea.