cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7447673
title: Supplementary Material for: Predictive Value of Age-Bilirubin-International Normalized Ratio-Creatinine Score in Short-Term Survival of Acute-on-Chronic Hepatitis B Liver Failure

description: <b><i>Background/Aims:</i></b> The age-bilirubin-international normalized ratio-creatinine (ABIC) score, which is a predictive model commonly used for alcoholic hepatitis, has not yet been studied in acute-on-chronic hepatitis B liver failure (HBV-ACLF). We aimed to investigate the predictive value of the ABIC score in patients with HBV-ACLF. <b><i>Methods:</i></b> This retrospective study involved 398 patients diagnosed with HBV-ACLF, who were divided into a training cohort of 305 patients and a validation cohort of 93 patients. Univariate and multivariate Cox regression models were used to determine risk factors for mortality. Area under the receiver operating characteristic curve (AUC) was calculated to estimate and compare the predictive values of different prognostic scores. <b><i>Results:</i></b> The ABIC score was significantly higher in the death group of the training cohort than in its survival group. Independent risk factors for mortality identified by multivariate Cox analysis included blood urea nitrogen, ABIC score, and Chronic Liver Failure Consortium Organ Failure (CLIF-C OF) score. For predicting 1- and 3-month mortality, AUC was higher for the ABIC score than for the Model for End-stage Liver Diseases (MELD) score (0.732 vs. 0.653, P &lt; 0.05, 0.695 vs. 0.619, P &lt; 0.05, respectively), CLIF-C OF score (0.693, P=0.353, 0.656, P=0.341, respectively), and Child-Pugh score (0.675, P=0.189, 0.656, P=0.300, Respectively). Patients with ABIC score &gt; 9.44 had reduced 1- and 3-month survival rates. <b><i>Conclusion:</i></b> ABIC score is superior to MELD score in predicting short-term survival in HBV-ACLF patients. ABIC score &gt; 9.44 predicts high short-term mortality risk in HBV-ACLF patients.
DOI: 10.7284/103466
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1109 using a Furuno GP-150 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447655
title: VP23_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.6084/m9.figshare.7447673.v1
title: Supplementary Material for: Predictive Value of Age-Bilirubin-International Normalized Ratio-Creatinine Score in Short-Term Survival of Acute-on-Chronic Hepatitis B Liver Failure

description: <b><i>Background/Aims:</i></b> The age-bilirubin-international normalized ratio-creatinine (ABIC) score, which is a predictive model commonly used for alcoholic hepatitis, has not yet been studied in acute-on-chronic hepatitis B liver failure (HBV-ACLF). We aimed to investigate the predictive value of the ABIC score in patients with HBV-ACLF. <b><i>Methods:</i></b> This retrospective study involved 398 patients diagnosed with HBV-ACLF, who were divided into a training cohort of 305 patients and a validation cohort of 93 patients. Univariate and multivariate Cox regression models were used to determine risk factors for mortality. Area under the receiver operating characteristic curve (AUC) was calculated to estimate and compare the predictive values of different prognostic scores. <b><i>Results:</i></b> The ABIC score was significantly higher in the death group of the training cohort than in its survival group. Independent risk factors for mortality identified by multivariate Cox analysis included blood urea nitrogen, ABIC score, and Chronic Liver Failure Consortium Organ Failure (CLIF-C OF) score. For predicting 1- and 3-month mortality, AUC was higher for the ABIC score than for the Model for End-stage Liver Diseases (MELD) score (0.732 vs. 0.653, P &lt; 0.05, 0.695 vs. 0.619, P &lt; 0.05, respectively), CLIF-C OF score (0.693, P=0.353, 0.656, P=0.341, respectively), and Child-Pugh score (0.675, P=0.189, 0.656, P=0.300, Respectively). Patients with ABIC score &gt; 9.44 had reduced 1- and 3-month survival rates. <b><i>Conclusion:</i></b> ABIC score is superior to MELD score in predicting short-term survival in HBV-ACLF patients. ABIC score &gt; 9.44 predicts high short-term mortality risk in HBV-ACLF patients.
DOI: 10.6084/m9.figshare.7447616
title: Supplementary Material for: Resveratrol Ameliorates Lipid Droplet Accumulation in Liver Through a SIRT1/ ATF6-Dependent Mechanism

description: <b><i>Background/Aims:</i></b> Lipid droplets (LDs) are dynamic organelles that store neutral lipids during times of energy excess, and an increased accumulation of LDs in the liver is closely linked to hepatic steatosis. Our previous studies suggested that resveratrol (RSV) supplement could improve hepatic steatosis, but the underlying mechanism, particularly which related to LD accumulation, has not yet been elucidated. <b><i>Methods:</i></b> A high-fat diet (HFD) and palmitic acid were used to induce hepatic steatosis in mouse liver and hepatocytes, respectively. The effects of RSV on LD accumulation were analyzed <i>in vivo</i> and <i>in vitro</i>. The effects of RSV on the expression levels of LD-associated genes (ATF6, Fsp27β/CIDEC, CREBH, and PLIN1) were measured by qRT-PCR and western blot assays, followed by KD or overexpression of SIRT1 and ATF6 with small interfering RNAs or overexpressed plasmids, respectively. The dual luciferase reporter assay, chromatin immunoprecipitation assay, coimmunoprecipitation, and proximity ligation assay were utilized to clarify the mechanism of transcriptional regulation and possible interaction between SIRT1 and ATF6. <b><i>Results:</i></b> There was a significant increase in the accumulation of LDs in liver and hepatocytes during the process of HFD-induced steatosis, respectively, which was significantly inhibited by RSV supplementation. RSV notably activated SIRT1 expression and decreased the expression levels of ATF6, Fsp27β/CIDEC, CREBH, and PLIN1, which are associated with LD accumulation. Interestingly, the inhibitory effects of RSV on LD accumulation and the associated expression of genes in hepatocytes were abrogated or strengthened with SIRT1 silencing or overexpression, respectively. On the contrary, the benefits of RSV in hepatocytes were eliminated or aggravated when transfected with the overexpressed ATF6 or ATF6 siRNA, respectively. Furthermore, we found that RSV stimulated SIRT1 expression significantly, which was followed by increased deacetylation and inactivation of ATF6, resulting in a positive feedback loop for SIRT1 transcription associated with ATF6 binding to the SIRT1 promoter region. <b><i>Conclusion:</i></b> Taken together, these findings indicate that RSV supplementation improves hepatic steatosis by ameliorating the accumulation of LDs, and this might be partially mediated by a SIRT1/ATF6-dependent mechanism.
DOI: 10.7284/103473
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1109 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103468
title: Gravimeter data collected during research cruise MV1109 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/114674
title: INS (Inertial Navigation System) data collected during research cruise MV1109 using a CodaOctopus F-185 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103467
title: Magnetometer data collected during research cruise MV1109 using a Marine Magnetics SeaSPY instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447541
title: Vocalizations of common minke whales (<i>Balaenoptera acutorostrata</i>) in an eastern North Pacific feeding ground

description: The minke whale (<i>Balaenoptera acutorostrata</i>) is a small species of baleen whale with a cosmopolitan distribution. Despite extensive study on the vocalizations of other balaenopterids, the acoustic repertoire of minke whales is not well known. Individuals of the North Pacific subspecies (<i>B. acutorostrata scammoni</i>) produce unique vocalizations (‘boings’) during their putative breeding season from fall to spring. However, no vocalizations have been previously reported for this subspecies in any eastern North Pacific feeding ground. We present two call types recorded in the presence of six minke whales, two of which were confirmed as female, in Cormorant Channel, British Columbia, Canada, during the summer of 2012. The calls consist of downsweeps and pulse chains. These call types share some characteristics with calls described elsewhere, although they are not identical to similar call types observed for other populations. Calling rates for minke whales in this study region are very low compared to those reported for this subspecies on its putative breeding grounds, as well as for other subspecies on their feeding grounds. We propose predation risk, sexual segregation and acoustic masking as potential causes of the low calling rates observed for minke whales in Cormorant Channel.
DOI: 10.7284/115486
title: Meteorological Station data collected during research cruise MV1109 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447541.v1
title: Vocalizations of common minke whales (<i>Balaenoptera acutorostrata</i>) in an eastern North Pacific feeding ground

description: The minke whale (<i>Balaenoptera acutorostrata</i>) is a small species of baleen whale with a cosmopolitan distribution. Despite extensive study on the vocalizations of other balaenopterids, the acoustic repertoire of minke whales is not well known. Individuals of the North Pacific subspecies (<i>B. acutorostrata scammoni</i>) produce unique vocalizations (‘boings’) during their putative breeding season from fall to spring. However, no vocalizations have been previously reported for this subspecies in any eastern North Pacific feeding ground. We present two call types recorded in the presence of six minke whales, two of which were confirmed as female, in Cormorant Channel, British Columbia, Canada, during the summer of 2012. The calls consist of downsweeps and pulse chains. These call types share some characteristics with calls described elsewhere, although they are not identical to similar call types observed for other populations. Calling rates for minke whales in this study region are very low compared to those reported for this subspecies on its putative breeding grounds, as well as for other subspecies on their feeding grounds. We propose predation risk, sexual segregation and acoustic masking as potential causes of the low calling rates observed for minke whales in Cormorant Channel.
DOI: 10.7284/103469
title: Multibeam Echosounder data collected during research cruise MV1109 using a Kongsberg EM122 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103479
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV1110 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447517
title: VP22_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.7284/103480
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise MV1110 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103481
title: Expendable Probe data collected during research cruise MV1110 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103475
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1110 using a Furuno GP-150 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103483
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1110 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447457
title: Three-dimensional multimodality fusion imaging as an educational and planning tool for deep-seated meningiomas

description: <b>Introduction:</b> The utility of surgical simulation with three-dimensional multimodality fusion imaging (3D-MFI) has been demonstrated. However, its potential in deep-seated brain lesions remains unknown. The aim of this study was to investigate the impact of 3D-MFI in deep-seated meningioma operations. <b>Material and Methods:</b> Fourteen patients with deeply located meningiomas were included in this study. We constructed 3D-MFIs by fusing high-resolution magnetic resonance (MR) and computed tomography (CT) images with a rotational digital subtraction angiogram (DSA) in all patients. The surgical procedure was simulated by 3D-MFI prior to operation. To assess the impact on neurosurgical education, the objective values of surgical simulation by 3D-MFIs/virtual reality (VR) video were evaluated. To validate the quality of 3D-MFIs, intraoperative findings were compared. The identification rate (IR) and positive predictive value (PPV) for the tumor feeding arteries and involved perforating arteries and veins were also assessed for quality assessment of 3D-MFI. <b>Results:</b> After surgical simulation by 3D-MFIs, near-total resection was achieved in 13 of 14 (92.9%) patients without neurological complications. 3D-MFIs significantly contributed to the understanding of surgical anatomy and optimal surgical view (<i>p</i> p p <b>Conclusions:</b> 3D-MFI contributed to learn skull base meningioma surgery. Also, 3D-MFI provided high quality to identify critical anatomical structures within or adjacent to deep-seated meningiomas. Thus, 3D-MFI is promising educational and surgical planning tool for meningiomas in deep-seated regions.
DOI: 10.7284/103477
title: Gravimeter data collected during research cruise MV1110 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447457.v1
title: Three-dimensional multimodality fusion imaging as an educational and planning tool for deep-seated meningiomas

description: <b>Introduction:</b> The utility of surgical simulation with three-dimensional multimodality fusion imaging (3D-MFI) has been demonstrated. However, its potential in deep-seated brain lesions remains unknown. The aim of this study was to investigate the impact of 3D-MFI in deep-seated meningioma operations. <b>Material and Methods:</b> Fourteen patients with deeply located meningiomas were included in this study. We constructed 3D-MFIs by fusing high-resolution magnetic resonance (MR) and computed tomography (CT) images with a rotational digital subtraction angiogram (DSA) in all patients. The surgical procedure was simulated by 3D-MFI prior to operation. To assess the impact on neurosurgical education, the objective values of surgical simulation by 3D-MFIs/virtual reality (VR) video were evaluated. To validate the quality of 3D-MFIs, intraoperative findings were compared. The identification rate (IR) and positive predictive value (PPV) for the tumor feeding arteries and involved perforating arteries and veins were also assessed for quality assessment of 3D-MFI. <b>Results:</b> After surgical simulation by 3D-MFIs, near-total resection was achieved in 13 of 14 (92.9%) patients without neurological complications. 3D-MFIs significantly contributed to the understanding of surgical anatomy and optimal surgical view (<i>p</i> p p <b>Conclusions:</b> 3D-MFI contributed to learn skull base meningioma surgery. Also, 3D-MFI provided high quality to identify critical anatomical structures within or adjacent to deep-seated meningiomas. Thus, 3D-MFI is promising educational and surgical planning tool for meningiomas in deep-seated regions.
DOI: 10.7284/114675
title: INS (Inertial Navigation System) data collected during research cruise MV1110 using a CodaOctopus F-185 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115487
title: Meteorological Station data collected during research cruise MV1110 using a SIO MET-System instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7447409
title: The Death and Life of Great Italian Cities: A Mobile Phone Data Perspective

description: Minimal files<br>
DOI: 10.6084/m9.figshare.7447409.v1
title: The Death and Life of Great Italian Cities: A Mobile Phone Data Perspective

description: Minimal files<br>
DOI: 10.15131/shef.data.7447406
title: Data used in the study "Prenatal growth map of the mouse knee joint by means of deformable registration technique"

description: Link to the data used in:<br>Giorgi, Sotiriou, Fanchini, Conigliaro, Bignardi, Nowlan, Dall’Ara (2018)<i><br></i><i>Prenatal growth map of the mouse knee joint by mean of deformable registration technique</i>. Plos One 2018.<br>The shared files within each subfolder are arranged as following: "B02_..." includes the cropped images of the joints for each anatomical site "C01b_..." includes the result file of the deformable registration "C03_..." includes the results for the Modified Hausdorff Distance (MDH) "C04_..." includes the average of the differences of the displacements between control and average maps "G_..." includes the scripts used to compute the results<br> For further information please contact the senior author at: e.dallara@sheffield.ac.uk<br>The files are stored in the University of Sheffield file-store at the link:https://web-unidrive.sheffield.ac.uk/shared/multisim2/WP7/Mario_Giorgi/BioMouse/
DOI: 10.7284/103478
title: Multibeam Echosounder data collected during research cruise MV1110 using a Kongsberg EM122 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.15131/shef.data.7447406.v2
title: Data used in the study "Prenatal growth map of the mouse knee joint by means of deformable registration technique"

description: Link to the data used in:<br>Giorgi, Sotiriou, Fanchini, Conigliaro, Bignardi, Nowlan, Dall’Ara (2018)<i><br></i><i>Prenatal growth map of the mouse knee joint by mean of deformable registration technique</i>. Plos One 2018.<br>The shared files within each subfolder are arranged as following: "B02_..." includes the cropped images of the joints for each anatomical site "C01b_..." includes the result file of the deformable registration "C03_..." includes the results for the Modified Hausdorff Distance (MDH) "C04_..." includes the average of the differences of the displacements between control and average maps "G_..." includes the scripts used to compute the results<br> For further information please contact the senior author at: e.dallara@sheffield.ac.uk<br>The files are stored in the University of Sheffield file-store at the link:https://web-unidrive.sheffield.ac.uk/shared/multisim2/WP7/Mario_Giorgi/BioMouse/
DOI: 10.6084/m9.figshare.7447403
title: VP20_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.6084/m9.figshare.7447403.v1
title: VP20_raw

description: Dataset from Ehinger, Groß et. al 2019A test battery for eye tracking comparisons. Concurrent recording of Eyelink 1000 & Pupil Labs Glasses in 15 subject in many different tasks<br>
DOI: 10.7284/103484
title: Winch data collected during research cruise MV1110 using a Markey DUSH-5 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103489
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise MV1111 using a Hawaii UHDAS instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103490
title: Expendable Probe data collected during research cruise MV1111 using a Sippican MK21 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7447352
title: 'Towards a New Sociology of the Text: The Concept of the Author in the Digital Age' Questionnaire and Results

description: The complete results of an online reader response questionnaire entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. Also, a copy of the questionnaire for reference.<br>500 participants were asked to attribute authorship to a computer-generated news article.<br>This dataset was amassed as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [questionnaire] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.7284/103485
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1111 using a Furuno GP-150 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7447352.v1
title: 'Towards a New Sociology of the Text: The Concept of the Author in the Digital Age' Questionnaire and Results

description: The complete results of an online reader response questionnaire entitled 'Towards a New Sociology of the Text: The concept of the Author in the Digital Age'. Also, a copy of the questionnaire for reference.<br>500 participants were asked to attribute authorship to a computer-generated news article.<br>This dataset was amassed as part of a doctoral research project to discern the social and literary implications of natural language generation and computer-generated texts.<br>Prior to beginning the questionnaire, participants agreed that 'I understand that anonymised quotes may be used in publications, reports, web pages, and other research outputs.' Participants were informed that '[t]he [questionnaire] results will be submitted to Loughborough University as part of a PhD thesis and disseminated via relevant academic/popular publications and/or conferences.'
DOI: 10.7284/103492
title: GNSS (Global Navigation Satellite System) data collected during research cruise MV1111 using a Ashtech ADU2 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/103487
title: Gravimeter data collected during research cruise MV1111 using a Bell BGM-3 instrument system onboard the platform RV Melville

description: Original (unprocessed) data collected during a Field_expedition