cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.23645/epacomptox.21215354.v1
title: Evaluating the utility of the Threshold of Toxicological Concern (TTC) and its exclusions in the biocompatibility assessment of extractable substances from medical devices

description: Data for " Evaluating the utility of the Threshold of Toxicological Concern (TTC) and its exclusions in the biocompatibility assessment of extractable substances from medical devices" <br> Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25 <br>
DOI: 10.6084/m9.figshare.13697443.v1
title: Invertebrate herbivory in disturbed rainforests

description: Data contains stem- and plot-level herbivory data from Barreto et al. (2021; DOI: 10.1002/ece3.7295). The incidence (percentage of leaves affected) and severity (the percentage of leaf area lost) of canopy insect herbivory caused by chewers, miners and gall-markers in leaves from 1,076 trees distributed across 20 undisturbed and human-modified forest plots in the Amazon.<br>Please, find all the details for the sampling and study design in our paper: https://doi.org/10.1002/ece3.7295I will be happy to answer any questions in case this database useful!
DOI: 10.6084/m9.figshare.16691377.v1
title: Supplementary Material for: Spondylometaepiphyseal Dysplasia Short Limb-Abnormal Calcification Type in Turkish Patients Reveals a Novel Mutation and New Features

description: Spondylometaepiphyseal dysplasia short limb-abnormal calcification type (SMED-SL/AC) is a rare autosomal recessive disorder. It is a severe dwarfism syndrome with a characteristic feature of progressive calcification of epiphyseal and other cartilaginous tissues. It is caused by pathogenic variants in the <i>DDR2</i> gene encoding the discoidin domain receptor tyrosine kinase 2. Thus far, 37 cases and 8 pathogenic variants have been reported. Most of the reported cases are of Middle Eastern and Puerto Rican origins. Only one Turkish case has been reported previously with a novel truncating variant p.(R489*). Here, we report 2 new cases, 1 with a novel variant p.(S311G) and 1 with a splice site variant c.2283+1G&gt;A. In addition, we reviewed a previously reported case, and sequencing of stored DNA revealed the recently reported nonsense variant p.(R489*) as the underlying cause. Therefore, our data increase the number of SMED-SL/AC Turkish patients with molecular results to 4. Furthermore, we compared the features of Turkish patients with other reported cases and expanded the characteristics of the disorder with new features such as triventricular hydrocephalus, intracranial hemorrhage, hypopigmentation of hair, dry and scaly skin, arthralgia, and hypocalcemia. We also compared the pathogenic variants of Turkish patients with other variants, aiming to explain the mechanism leading to a more severe and early fatal course in Turkish patients.
DOI: 10.6084/m9.figshare.12376862.v1
title: Untitled Item

description: Powdery mildew is an important disease of rubber trees worldwide. To assess the effects of temperature and leaf age on conidial germination and disease development, conidia were inoculated onto leaves of rubber tree seedlings at three phenological stages (copper bronze, color changing and light green) and then incubated at six constant temperatures (10, 15, 20, 25, 30 and 35 °C). Leaf age did not affect conidial germination (<i>P</i> = 0.296) while temperature significantly affected conidial germination (<i>P</i> &lt; 0.0001) although conidia were able to germinate at all tested temperatures. The estimated optimal temperature for conidial germination was 23.2 °C. Leaf age, temperature and their interactions had significant effects on conidial infection and hypha number (<i>P</i> &lt; 0.0001). At 10 and 35°C, more time (2-5 days) was needed for infection to complete, compared to &lt; 2 days for other combinations. Sporulation and mildew symptoms were only observed on those inoculated leaves of all stages at 20 and 25 °C, and at the copper bronze stage at 15 °C only. At 15°C, the latent period on the copper bronze leaves was longer (9 days) than at 20 and 25 °C (4 days). The latent period at 20 and 25°C increased from 4 to 7 days as the leaf development stage increased from copper bronze to light green. Therefore, temperature affects germination and post-germination growth of rubber tree powdery mildew, whereas leaf age primarily affects post-germination growth of the pathogen.
DOI: 10.6084/m9.figshare.19130474.v4
title: InteractionData_Silen.csv

description: Curated dataset of interactions between plants and insects in subarctic Finland, generated from digitizing a historical document by Frans Silén from the late 19th century and updating the taxonomy using currently accepted nomenclature.
DOI: 10.6084/m9.figshare.6127100.v1
title: High-risk Trans-Catheter Aortic Valve Replacement in a Failed Freestyle Valve with Low Coronary Height: A Case Report

description: <b>Article full text</b> <br> The full text of this article can be found here<b>. </b>https://link.springer.com/article/10.1007/s40119-017-0088-4 <br> <b>Provide enhanced content for this article</b> <br> If you are an author of this publication and would like to provide additional enhanced content for your article then please contact <b>adisrapidplus@springer.com</b>. <br> The journal offers a range of additional features designed to increase visibility and readership. All features will be thoroughly peer reviewed to ensure the content is of the highest scientific standard and all features are marked as ‘peer reviewed’ to ensure readers are aware that the content has been reviewed to the same level as the articles they are being presented alongside. Moreover, all sponsorship and disclosure information is included to provide complete transparency and adherence to good publication practices. This ensures that however the content is reached the reader has a full understanding of its origin. No fees are charged for hosting additional open access content. <br> Other enhanced features include, but are not limited to: <br> • Slide decks • Videos and animations • Audio abstracts • Audio slides
DOI: 10.6084/m9.figshare.7098554.v1
title: Supplementary Material for: Clinical Implication of Multi-Parameter Flow Cytometry in Myelodysplastic Syndromes

description: Myelodysplastic syndromes (MDS) are a challenging group of diseases for clinicians and researchers, as both disease course and pathobiology are highly heterogeneous. In (suspected) MDS patients, multi-parameter flow cytometry can aid in establishing diagnosis, risk stratification and choice of therapy. This review addresses the developments and future directions of multi-parameter flow cytometry scores in MDS. Additionally, we propose an integrated diagnostic algorithm for suspected MDS.
DOI: 10.21954/ou.rd.22123663.v1
title: RAW_SmallRingTensileTest_StainlessSteel316L_ExtensionRate1_45mmMin

description: This is a part of the test dataset (Digital Image Correlation Images and CSV data) that describes the experiments done at The Open University for the Small Ring Tensile Testing of SS316L performed at various displacement rates. Unprocessed images (.NEF format) start with the prefix 'RAW' while processed images (.TIF format) start with the prefix 'CLEAN'. The following letters after that describe the test type (Small Ring Test or Uniaxial Test), followed by the material. Lastly, after the material, the crosshead extension rate is described. For instance, 'Extension Rate0_3mmMin' refers to an extension rate of 0.3 mm/min and so on. The 'RAW' folders also contain the unprocessed CSV files. The 'CLEAN' folders contain the camera information (capture interval, ISO, etc) as well as the denoised CSV experimental files. The CSV files are denoised with the help of a Butterworth filter.
DOI: 10.6084/m9.figshare.13213691.v1
title: Soil greenhouse gas emissions from a sisal chronosequence in Kenya

description: We examined soil-atmosphere GHG fluxes (<i>Fs</i>) in a sisal chronosequence in Teita Sisal Estate, the third largest sisal estate in the world located in southern Kenya. The effects of stand age on <i>Fs</i> were studied using static chamber and gas chromatography for one year in seven sisal stands with different ages (S1, S2 and S3 young stands: 1-3 years, S7 and S8 mature stands: 7-8 years, and S13 and S14 old stands: 13-14 years), and adjacent bushland as a control site representing the surrounding land use type.
DOI: 10.6084/m9.figshare.7571081.v1
title: Gridded birth and pregnancy datasets for Africa, Latin America and the Caribbean

description: 20 minute lightning talk presentation given by Natalia Tejedor Garavito, from University of Southampton and WorldPop, at the Better Science through Better Data 2018 event. The video recording, slides and scribe are included.
DOI: 10.6084/m9.figshare.28518890.v1
title: Datasets for Plume-induced deep CH<sub>4</sub> emission linked to mass extinctions

description: These are supplementary datasets for paper “Plume-induced deep CH<sub>4</sub> emission linked to mass extinctions".
DOI: 10.17028/rd.lboro.19714528.v1
title: Supplementary information files for Evaluating the Activity and Stability of Perovskite LaMO3-Based Pt Catalysts in the Aqueous Phase Reforming of Glycerol

description: Supplemental files for article Evaluating the Activity and Stability of Perovskite LaMO3-Based Pt Catalysts in the Aqueous Phase Reforming of Glycerol <br> Abstract The aqueous phase reforming of glycerol, to hydrogen, alkanes and liquid phase dehydration/dehydrogenation products, was studied over a series of 1 wt% Pt/LaMO3 (where M = Al, Cr, Mn, Fe, Co, Ni) catalysts and compared to a standard 1 wt% Pt/γ-Al2O3 catalyst. The sol–gel combustion synthesis of lanthanum-based perovskites LaMO3 produced pure phase perovskites with surface areas of 8–18 m2g−1. Glycerol conversions were higher than the Pt/γ-Al2O3 (10%) for several perovskite supported catalysts, with the highest being for Pt/LaNiO3 (19%). Perovskite-based catalysts showed reduced alkane formation and significantly increased lactic acid formation compared to the standard catalyst. However, most of the perovskite materials undergo phase separation to LaCO3OH and respective M site oxides with Pt particle migration. The exception being the LaCrO3 support which was found to remain structurally stable. Catalytic performance remained stable over several cycles, for catalysts M = Al, Cr and Ni, despite phase separation of some of these materials. Materials where M site leaching into solution was observed (M = Mn and Co), were found to be catalytically unstable, which was hypothesised to be due to significant loss in support surface area and uncontrolled migration of Pt to the remaining support surface. In the case of Pt/LaNiO3 alloying between the exsoluted Ni and Pt was observed post reaction.
DOI: 10.6084/m9.figshare.28723529.v1
title: soilsoilDifferences in Soil Carbon Fractions and Microbial Communities between ANR and Plantation Forests

description: This study assessed SOC fractions and microbial communities across four forest management types in southeastern China: secondary forest (SF), assisted natural regeneration (ANR), and two monoculture plantations (Castanopsis carlesii and Cunninghamia lanceolata). Labile and recalcitrant organic carbon fractions, SOC and total nitrogen (TN) were measured. The microbial community structure of the soil was determined using PLFAs.
DOI: 10.6084/m9.figshare.5120494.v1
title: Supplementary Material for: Novel Mutation in the <i>ABCA1</i> Gene Identified in a Chinese Patient with Dementia and Atherothrombotic Cerebral Infarction

description: <i>Background:</i> To date, 81 mutations of ATP-binding cassette transporter 1 (<i>ABCA1)</i> have been reported. However, no <i>ABCA1</i> mutation has been reported in the Chinese population. <i>Methods:</i> We used direct sequencing to screen for <i>ABCA1</i> mutations in 72 patients with both atherosclerotic cerebral infarction (ACI) and plasma high-density lipoprotein cholesterol (HDL-C) &lt; 0.8 mmol/l. The functionality of the mutation was verified using 200 unrelated controls and 76 patients with ACI and normal HDL-C by PCR-RFLP analysis. <i>Results:</i> One patient with dementia prior to ACI was found to carry the heterozygous Y2206D mutation, which has not been reported previously. The patient had a medical history of atherosclerosis in the coronary and carotid arteries going back 40 years and splenohepatomegalia for 13 years, with a low plasma HDL-C level (0.66 mmol/l) and apolipoprotein A1 level (0.61 mmol/l). During the past decade, he had developed symptoms of dementia. Sixteen months prior to the study, he was admitted to hospital for an ACI. <i>Conclusion:</i> The results suggest that this patient is most likely a patient with familial hypoalphalipoproteinemia and that the Y2206D mutation may be associated with not only a lower level of HDL-C, but also with dementia.
DOI: 10.6084/m9.figshare.5126935.v1
title: Supplementary Material for: Association of Filaggrin Variants with Asthma and Rhinitis: Is Eczema or Allergic Sensitization Status an Effect Modifier?

description: <b><i>Background:</i></b> Associations of variants of the filaggrin gene, i.e. <i>FLG</i> with asthma and rhinitis have been shown to be modulated by eczema status. However, it is unknown whether allergic sensitization status modifies this association. The aim of this study was to determine whether <i>FLG</i> variants need eczema and/or allergic sensitization as a necessary component to execute adverse effects on coexisting and subsequent asthma and rhinitis. <b><i>Methods:</i></b> In the Isle of Wight birth cohort, repeated measurements of asthma, rhinitis, eczema and allergic sensitization (documented by skin-prick tests) were taken in 1,456 children at the ages of 1, 2, 4, 10 and 18 years. Filaggrin haploinsufficiency was defined as having at least the minor allele of R501X, 2282del4 or S3247X variants. log-binomial regression models were used to test associations and statistical interactions. <b><i>Results:</i></b><i>FLG</i> variants increased the risk of asthma [risk ratio (RR) 1.39, 95% confidence interval (CI) 1.06-1.80] and rhinitis (RR 1.37, 95% CI 1.16-1.63). In the delayed-effects models, ‘<i>FLG</i> variants plus allergic sensitization' and ‘<i>FLG</i> variants plus eczema' increased the risk of subsequent asthma by 4.93-fold (95% CI 3.61-6.71) and 3.33-fold (95% CI 2.45-4.51), respectively, during the first 18 years of life. In contrast, neither eczema nor allergic sensitization in combination with <i>FLG</i> variants increased the risk of later rhinitis. <b><i>Conclusions:</i></b> Allergic sensitization and eczema modulated the association between <i>FLG</i> variants and asthma but not rhinitis. Our results imply that the mechanisms and pathways through which <i>FLG</i> variants predispose to an increased risk of asthma and rhinitis may be different.
DOI: 10.6084/m9.figshare.11900325.v1
title: Geolocated Tweets from Florida, USA during Hurricane Irma (2017) with Relevance Scores

description: The dataset is a csv file of all tweets from the US state of Florida that contain images from Sept. 10-12, 2017. Tweets were collected using a geolocated bounding box around the state of Florida. In compliance with Twitter's data sharing policy, only the tweet IDs are recorded, but we also provide 4 relevance scores (between 0 and 1) based on the User, Tweet text, Image, and a Geolocation score). each score ranges from 0 (not relevant to Hurricane Irma) and 1 (relevant to Hurricane Irma). The full workflow for developing these scores is provided the companion paper listed below.
DOI: 10.6084/m9.figshare.5127697.v1
title: Supplementary Material for: The Empirical Status of Psychodynamic Psychotherapy - An Update: Bambi's Alive and Kicking

description: <b><i>Background:</i></b> The Task Force on Promotion and Dissemination of Psychological Procedures proposed rigorous criteria to define empirically supported psychotherapies. According to these criteria, 2 randomized controlled trials (RCTs) showing efficacy are required for a treatment to be designated as ‘efficacious' and 1 RCT for a designation as ‘possibly efficacious'. Applying these criteria modified by Chambless and Hollon, this article presents an update on the evidence for psychodynamic therapy (PDT) in specific mental disorders. <b><i>Methods:</i></b> A systematic search was performed using the criteria by Chambless and Hollon for study selection, as follows: (1) RCT of PDT in adults, (2) use of reliable and valid measures for diagnosis and outcome, (3) use of treatment manuals or manual-like guidelines, (4) adult population treated for specific problems and (5) PDT superior to no treatment, placebo or alternative treatment or equivalent to an established treatment. <b><i>Results:</i></b> A total of 39 RCTs were included. Following Chambless and Hollon, PDT can presently be designated as efficacious in major depressive disorder (MDD), social anxiety disorder, borderline and heterogeneous personality disorders, somatoform pain disorder, and anorexia nervosa. For MDD, this also applies to the combination with pharmacotherapy. PDT can be considered as possibly efficacious in dysthymia, complicated grief, panic disorder, generalized anxiety disorder, and substance abuse/dependence. Evidence is lacking for obsessive-compulsive, posttraumatic stress, bipolar and schizophrenia spectrum disorder(s). <b><i>Conclusions:</i></b> Evidence has emerged that PDT is efficacious or possibly efficacious in a wide range of common mental disorders. Further research is required for those disorders for which sufficient evidence does not yet exist.
DOI: 10.48420/23771919.v1
title: Monte Carlo Simulation of the Profits of Households in a Peer-to-Peer Electricity Market Accounting for Imbalance Charges - Results

description: Results from Monte Carlo simulation of households with rooftop PV acting in a peer-to-peer electricity market. The model calculated the profit of a households in the peer-to-peer electricity market accounting for imbalance charges. The revenue from the traditional market (retail market and feed-in tariff) is also calculated for comparison. See linked software in related materials section.
DOI: 10.6084/m9.figshare.23310023.v1
title: Supplementary Material for: Maternal, Perinatal, and Postnatal Predisposing Factors of Hearing Loss in Full-Term Children: A Matched Case-Control Study

description: <b><i>Introduction:</i></b> Studies on risk factors for childhood hearing loss (HL) are usually based on questionnaires or small sample sizes. We conducted a nationwide population-based case-control study to comprehensively analyze the maternal, perinatal, and postnatal risk factors for HL in full-term children. <b><i>Methods:</i></b> We retrieved data from three nationwide databases related to maternal characteristics, perinatal comorbidities, and postnatal characteristics and adverse events. We used 1:5 propensity score matching to include 12,873 full-term children with HL and 64,365 age-, sex-, and enrolled year-matched controls. Conditional logistic regression was used to evaluate the risk factors for HL. <b><i>Results:</i></b> Among the various maternal factors, maternal HL (adjusted odds ratio [aOR]: 8.09, 95% confidence interval [95% CI]: 7.16–9.16) and type 1 diabetes (aOR: 3.79, 95% CI: 1.98–7.24) had the highest odds of childhood hearing impairment. The major perinatal risk factors for childhood hearing impairment included ear malformations (aOR: 58.78, 95% CI: 37.5–92.0) and chromosomal anomalies (aOR: 6.70, 95% CI: 5.25–8.55), and the major postnatal risk factors included meningitis (aOR: 2.08, 95% CI: 1.18–3.67) and seizure (aOR: 3.71, 95% CI: 2.88–4.77). Other factors included acute otitis media, postnatal ototoxic drug use, and congenital infections. <b><i>Conclusions:</i></b> Many risk factors for childhood HL identified in our study are preventable, such as congenital infection, meningitis, ototoxic drug use, and some maternal comorbidities. Accordingly, more effort is required to prevent and control the severity of maternal comorbidities during pregnancy, initiate genetic diagnostic evaluation for high-risk children, and aggressive screening for neonatal infections.
DOI: 10.6084/m9.figshare.8869043.v1
title: Income, Wellbeing, Love for Money Cleaned Data (.xlsx file)

description: This is a cleaned dataset (any invalid entries have been removed) of 100 responses consisting of data on age, sex, country of residence, region (based on continent), national/abroad (in context of whether the participant is from India or outside), scores on an item measuring love for money, WHO-5 Wellbeing scores and percentiles. The raw dataset for the same is also available. This data was collected as part of a study examining the relationship between income and wellbeing mediated/moderated by love for money. Coding for 'sex' column Male = 1, Female = 2, and Other = 3.
DOI: 10.15468/dl.pxqnk5
title: Occurrence Download

description: A dataset containing 4477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Danaus plexippus (Linnaeus, 1758), Ammopelmatus muwu Rentz & Weissman, 1981, Haliotis cracherodii Leach, 1814, Actinemys marmorata (Baird & Girard, 1852), Rana draytonii Baird & Girard, 1852, Thamnophis hammondii (Kennicott, 1860))",
 "OccurrenceStatus is Present",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON ((-121.3464 33.21473, -118.6325 33.21473, -118.6325 35.79518, -121.3464 35.79518, -121.3464 33.21473))"
 ]
}

 The dataset includes 4477 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009359-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.6736286.v1
title: Supplementary Material for: Host MICA Polymorphism as a Potential Predictive Marker in Response to Chemotherapy for Colorectal Liver Metastases

description: <b><i>Background:</i></b> Understanding the genetic background of a tumor is important to better stratify patient prognosis and select optimal treatment. For colorectal liver metastases (CLM), however, clinically available biomarkers remain limited. <b><i>Methods:</i></b> After a comprehensive sequencing of 578 cancer-related genes in 10 patients exhibiting very good/poor responses to chemotherapy, the A5.1 variant of the <i>MICA</i> gene was selected as a potential biomarker for CLM. The clinical relevance of <i>MICA</i> A5.1 was then investigated in 58 patients who underwent CLM resection after chemotherapy. <b><i>Results:</i></b> The A5.1 variant was observed in 16 (27.6%) patients examined using direct DNA sequencing, and a very high concordance rate (56/58, 96.6%) for the <i>MICA</i> variant was confirmed between tumor tissues and normal liver parenchyma. A multivariate analysis of 38 patients with no history of treatment with anti-EGFR antibodies confirmed that <i>MICA</i> A5.1 was significantly correlated with an optimal CT morphologic response (OR 11.67; 95% CI 2.08–65.60; <i>p</i> = 0.005) and tended to be correlated with a tumor viability of &lt; 20% after chemotherapy (OR 5.91; 95% CI 0.97–36.02; <i>p</i> = 0.054). <i>MICA</i> A5.1 was also associated with a decreased risk of progression after CLM resection. <b><i>Conclusion:</i></b> The <i>MICA</i> A5.1 polymorphism was associated with a better CT morphologic response to chemotherapy and a reduced risk of relapse after CLM resection. Given the high concordance rate in <i>MICA</i> variants between normal liver tissue and CLM, the genetic background of the host could be a new biomarker for CLM.