cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hqy44f
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Costus gabonensis Koechlin",
 "Year 1000-2020"
 ]
}

 The dataset includes 77 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079578-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5k7kpc
title: Occurrence Download

description: A dataset containing 2042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Coturnicops noveboracensis (Gmelin, 1789)",
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2042 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061267-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tey8pn
title: Occurrence Download

description: A dataset containing 71595384 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is iNaturalist Research-grade Observations"
 ]
}

 The dataset includes 71595384 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009432-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvetmr
title: Occurrence Download

description: A dataset containing 1431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "Geometry POLYGON((-162.421875 23.241346,-162.421875 16.467694,-152.578125 16.467694,-152.578125 23.241346,-162.421875 23.241346))"
 ]
}

 The dataset includes 1431 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079579-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4gl4w8
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotoneaster morrisonensis Hayata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 }
 ]
}

 The dataset includes 39 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061270-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vj98ef
title: Occurrence Download

description: A dataset containing 128656 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is San Diego Natural History Museum Entomology Department"
 ]
}

 The dataset includes 128656 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009431-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3rhfe
title: Occurrence Download

description: A dataset containing 750 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Costa Rica",
 "Country is Mexico"
 ]
 },
 "Year 2012-2019",
 "TaxonKey is Procyon lotor (Linnaeus, 1758)"
 ]
}

 The dataset includes 750 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010880-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6jbyuy
title: Occurrence Download

description: A dataset containing 284 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cotoneaster moupinensis Franch.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Living Specimen"
 ]
 }
 ]
}

 The dataset includes 284 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061271-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bd9n23
title: Occurrence Download

description: A dataset containing 66411 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.50966 35.81006,-4.05405 36.83721,-5.76062 37.46928,-6.77453 36.7005,-5.50966 35.81006))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 66411 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008830-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ravund
title: Occurrence Download

description: A dataset containing 200 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is South America",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Puma concolor (Linnaeus, 1771)"
 ]
}

 The dataset includes 200 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158048-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r3jhdx
title: Occurrence Download

description: A dataset containing 61788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudopleuronectes americanus (Walbaum, 1792)"
 ]
}

 The dataset includes 61788 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031440-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.as2rys
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora multiformis Jacq."
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063848-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pnu3kg
title: Occurrence Download

description: A dataset listing the 293 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Roadkill"
 ]
}

 The dataset's 293 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194268-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.deuc7r
title: Occurrence Download

description: A dataset containing 666 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Icelinus borealis Gilbert, 1896"
 ]
}

 The dataset includes 666 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031435-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mvhejn
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia altissima Baker f."
 ]
}

 The dataset includes 37 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019932-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvwyen
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Bombus melaleucus Handlirsch, 1888"
 ]
}

 The dataset includes 61 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190238-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.754qys
title: Occurrence Download

description: A dataset containing 1106 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mazama temama (Kerr, 1792)"
 ]
}

 The dataset includes 1106 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0361711-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xy95xk
title: Occurrence Download

description: A dataset containing 320047 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Piper L."
 ]
}

 The dataset includes 320047 records from 894 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190244-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmww3f
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Odorrana utsunomiyaorum (Matsui, 1994))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062215-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/dans-xnk-pjr6
title: Industry, pollution and environmental policy in Leiden during the 19th and 20th centuries

description: This dataset contains data on the type of industry in Leiden from 1850 until 1880. The data provide an insight into the problem(s) of pollution in that period. This dataset is the result of a project between the Environmental Department of Leiden and the History Department at Leiden University. The original goal was to construct a database on polluted industrial sites, by investigating historical sources.
DOI: 10.15468/dl.khe3x7
title: Occurrence Download

description: A dataset containing 511871 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Apis mellifera Linnaeus, 1758"
 ]
}

 The dataset includes 511871 records from 854 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0360855-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15621863
title: SMCBenchmark

description: The processed (already converted MIDI/csv files to npy files) but unquantized SMCBenchmark for symbolic music classification.

Paper name (to cite the benchmark)

Jun-You Wang and Li Su, "Improving BERT for symbolic music understanding using token denoising and pianoroll prediction," ISMIR 2025.

Data format

Each dataset contains two files: note list and groundtruth labels. 

For example, 'pm2s_train.npy' is the data list while 'pm2s_train_beatans.npy' is the groundtruth of the dataset (PM2S) for the BP task.

Each data list contains a list of songs; each song contains a list of notes; each note is represented as [onset, offset, MIDI pitch]. Except VF (where onset and offset times are in local beats) and BP/DbP (where onset and offset times are "pseudo" crotchet beats), all onset and offset times are represented in crotchet beats.

For sequence prediction tasks (SGC/PR/ER), the groundtruth is a list of integer, each indicates the class label of a song; for note-level prediction tasks, the groundtruth is a list of label list; each label in the label list indicates the class label of a note in a song.

Evaluation details

In our implementation, for sequence prediction tasks, the note sequences are segmented to 512-note segments, and the accuracy is computed at the segment level (not the whole song level). This follows the implementation of MidiBERT.

Note that this "512" parameter has nothing to do with the actual max length of the pretrained model (actually, the default setting of the proposed M2BERT has a max note length of 1024).

For cross-validation tasks, the accuracy is computed for each fold; then, we average all folds' accuracies to obtain the final results.

For other evaluation details, please see https://github.com/york135/SMCBenchmark 

Data names




Task
Data files
Groundtruth files


SGC
tagatraum_{train, valid, test}.npy
tagatraum_{train, valid, test}_genreans.npy


BP
pm2s_{train, valid, test}.npy
pm2s_{train, valid, test}_beatans.npy


DbP
pm2s_{train, valid, test}.npy
pm2s_{train, valid, test}_downbeatans.npy


CR


augnet_{train, valid, test}.npy



augnet_{train, valid, test}_chordrootans.npy



LK
augnet_{train, valid, test}.npy
augnet_{train, valid, test}_localkeyans.npy


ME
pop909_{train, valid, test}.npy
pop909_{train, valid, test}_melodyans.npy


VE
pop909_{train, valid, test}.npy
pop909_{train, valid, test}_velocityans.npy


OTC
orch_{train, valid, test}.npy
orch_{train, valid, test}_textureans.npy


PS
pianist8_fold_{0, 1, 2, 3, 4}.npy
pianist8_fold_{0, 1, 2, 3, 4}_composerans.npy


ER
emopia_fold_{0, 1, 2, 3, 4}.npy
emopia_fold_{0, 1, 2, 3, 4}_emotionans.npy


VF
tnua_{train, valid, test}.npy
tnua_{train, valid, test}_violin_allans.npy


MNID
bps_motif_fold_{0, 1, 2, 3, 4}.npy
bps_motif_fold_{0, 1, 2, 3, 4}_mnidans.npy




Please feels free to report any issue by sending e-mail to me (junyouwang135@gmail.com) !
DOI: 10.15468/dl.7j4ncu
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Indonesia, Malaysia, Philippines)",
 "Geometry POLYGON((87.57359 -14.97056,172.42641 -14.97056,172.42641 18.97056,87.57359 18.97056,87.57359 -14.97056))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Octomeles Miq."
 ]
}

 The dataset includes 155 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030154-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13164184
title: Online Appendix of "RENAS: Prioritizing Co-Renaming Opportunities of Identifiers"

description: Please see README.md included in the archive for more detailed explanations of the dataset.



result/

result/{rq1, rq1_manual}/rq1.csv

Evaluation result of RQ1

result/similarity/similarity.csv

Evaluation result of Section III-E1

result/preliminary/value_by_alpha_beta.csv

Evaluation result of Section III-E3


projects/

projects/*project name*/recommend.json.gz
recommendation from each approaches and renamings from RefactoringMiner

projects/*project name*/manualValidation.csv

From the obtained renames using RefactoringMiner, we manually created co-renamed sets.
DOI: 10.5281/zenodo.13349214
title: Online Appendix of "RENAS: Prioritizing Co-Renaming Opportunities of Identifiers"

description: Please see README.md included in the archive for more detailed explanations of the dataset.



result/

result/{rq1, rq1_manual}/rq1.csv

Evaluation result of RQ1

 



result/{rq2, rq2_manual}/ranking_evaluation.csv

Evaluation result of RQ2


result/similarity/similarity.csv

Evaluation result of Section III-E1

result/preliminary/value_by_alpha_beta.csv

Evaluation result of Section III-E3


projects/

projects/*project name*/recommend.json.gz
recommendation from each approaches and renamings from RefactoringMiner

projects/*project name*/manualValidation.csv

From the obtained renames using RefactoringMiner, we manually created co-renamed sets.
DOI: 10.5281/zenodo.13164183
title: Online Appendix of "RENAS: Prioritizing Co-Renaming Opportunities of Identifiers"

description: Please see README.md included in the archive for more detailed explanations of the dataset.



result/

result/{rq1, rq1_manual}/rq1.csv

Evaluation result of RQ1

 



result/{rq2, rq2_manual}/ranking_evaluation.csv

Evaluation result of RQ2


result/similarity/similarity.csv

Evaluation result of Section III-E1

result/preliminary/value_by_alpha_beta.csv

Evaluation result of Section III-E3


projects/

projects/*project name*/recommend.json.gz
recommendation from each approaches and renamings from RefactoringMiner

projects/*project name*/manualValidation.csv

From the obtained renames using RefactoringMiner, we manually created co-renamed sets.
DOI: 10.5281/zenodo.15621817
title: Online Appendix of "RENAS: Prioritizing Co-Renaming Opportunities of Identifiers"

description: Please see README.md included in the archive for more detailed explanations of the dataset.



result/

result/{rq1, rq1_manual}/rq1.csv

Evaluation result of RQ1

 



result/{rq2, rq2_manual}/ranking_evaluation.csv

Evaluation result of RQ2


result/similarity/similarity.csv

Evaluation result of Section III-E1

result/preliminary/value_by_alpha_beta.csv

Evaluation result of Section III-E3


projects/

projects/*project name*/recommend.json.gz
recommendation from each approaches and renamings from RefactoringMiner

projects/*project name*/manualValidation.csv

From the obtained renames using RefactoringMiner, we manually created co-renamed sets.
DOI: 10.15468/dl.hhsj9e
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Campanula sclerotricha Boiss."
 ]
}

 The dataset includes 53 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068719-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhdfgz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aethopsylla acutus (Baker, 1904)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010475-231120084113126/datasets/export for details.
DOI: 10.15468/dl.27knfd
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduelis atriceps (Salvin, 1863)",
 "Geometry POLYGON((-92.197265 18.583775,-91.911621 18.354525,-91.076660 17.978733,-90.175781 17.727758,-89.516601 17.413546,-89.187011 16.909683,-89.428710 16.256867,-89.516601 15.876809,-89.604492 15.707662,-89.824218 15.305379,-90.791015 14.817370,-91.164550 14.923554,-91.867675 15.284185,-92.329101 15.686509,-92.285156 16.362309,-92.021484 16.867633,-91.801757 17.329664,-92.373046 17.685895,-92.548828 18.271086,-92.570800 18.521283,-92.197265 18.583775))",
 "HasCoordinate is true",
 {
 "or" : [
 "HasGeospatialIssue is false",
 "HasGeospatialIssue is true"
 ]
 }
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027214-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjvw6w
title: Occurrence Download

description: A dataset containing 25833 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petaurus australis Shaw, 1791"
 ]
}

 The dataset includes 25833 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068699-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ejpum8
title: Occurrence Download

description: A dataset containing 337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Markhamia stipulata (Wall.) Seem. ex K.Schum.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 337 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039891-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afu6od
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyanolyca pumilo (Strickland, 1849)",
 "Geometry POLYGON((-92.087402 18.604601,-91.274414 18.333669,-90.834960 18.124970,-90.109863 17.644022,-89.560546 17.581194,-89.230957 17.014767,-89.362792 16.214674,-89.648437 15.834535,-89.912109 15.474857,-90.285644 15.114552,-90.461425 15.029685,-91.076660 14.944784,-91.362304 15.220589,-91.691894 15.347761,-92.087402 15.623036,-92.043457 16.066928,-91.691894 16.741427,-92.021484 17.182779,-92.021484 17.790535,-92.219238 18.041421,-92.482910 18.271086,-92.460937 18.500447,-92.087402 18.604601))",
 "HasCoordinate is true",
 {
 "or" : [
 "HasGeospatialIssue is false",
 "HasGeospatialIssue is true"
 ]
 }
 ]
}

 The dataset includes 63 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027216-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2c4kk
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Solenodon paradoxus Brandt, 1833"
 ]
}

 The dataset includes 126 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068723-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ylf82
title: Occurrence Download

description: A dataset containing 14457 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pteropus poliocephalus Temminck, 1825",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14457 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027230-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bafd96
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phrynopus iatamasi Aguayo-Vedia & Harvey, 2001"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015453-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.