cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.skb6n6
title: Occurrence Download

description: A dataset containing 14925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Phylloscartes ventralis",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 14925 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0079964-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g69wdb
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ozotoceros bezoarticus (Linnaeus, 1758)"
 ]
}

 The dataset includes 324 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051379-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57827
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.y4enfc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nepytia umbrosaria (Packard, 1873)",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393094-210914110416597/datasets/export for details.
DOI: 10.18141/2336707
title: WaterTAP 0.3 Release

description: The Water treatment Technoeconomic Assessment Platform (WaterTAP) is an open-source Python-based software package that supports the simulation and optimization of process-scale water treatment trains. WaterTAP seeks to provide the broader water research community with an integrated modeling capability to evaluate cost, energy, and environmental tradeoffs across water treatment options and identify high impact opportunities for innovation including novel materials, processes, and systems. An updated version of WaterTAP is released quarterly and each includes documentation and release notes.
DOI: 10.25549/pcra-c14-57753
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.dkpdnz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dasychira grisefacta Dyar, 1911",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393100-210914110416597/datasets/export for details.
DOI: 10.15468/dl.2agqpc
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "TaxonKey is Miconia staminea (Desr.) DC."
 ]
}

 The dataset includes 26 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040388-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63hkgv
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Cestrum nocturnum L."
 ]
}

 The dataset includes 135 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205209-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18141/2336709
title: WaterTAP 0.4 Release

description: The Water treatment Technoeconomic Assessment Platform (WaterTAP) is an open-source Python-based software package that supports the simulation and optimization of process-scale water treatment trains. WaterTAP seeks to provide the broader water research community with an integrated modeling capability to evaluate cost, energy, and environmental tradeoffs across water treatment options and identify high impact opportunities for innovation including novel materials, processes, and systems. An updated version of WaterTAP is released quarterly and each includes documentation and release notes.
DOI: 10.15468/dl.f4sxsv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dioryctria tumicolella Mutuura, Munroe & Ross, 1969",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393183-210914110416597/datasets/export for details.
DOI: 10.15468/dl.jyox8n
title: Occurrence Download

description: A dataset containing 202836 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Vulnerable marine ecosystems in the South Pacific Ocean region"
 ]
}

 The dataset includes 202836 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030142-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/pcra-c14-57745
title: Redemption tidings, vol. 38, nos. 1-52, 5 Jan. - 28 Dec. 1962

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.18141/2336710
title: WaterTAP 0.5 Release

description: The Water treatment Technoeconomic Assessment Platform (WaterTAP) is an open-source Python-based software package that supports the simulation and optimization of process-scale water treatment trains. WaterTAP seeks to provide the broader water research community with an integrated modeling capability to evaluate cost, energy, and environmental tradeoffs across water treatment options and identify high impact opportunities for innovation including novel materials, processes, and systems. An updated version of WaterTAP is released quarterly and each includes documentation and release notes.
DOI: 10.25549/pcra-c14-59105
title: Redemption tidings, vol. 39, nos. 1-52, 4 Jan. - 27 Dec. 1963

description: [description english/roman)] Issued weekly. "A full gospel magazine" -- subtitle.
DOI: 10.15468/dl.gz2rr4
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microula jilongensis W.T.Wang"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040370-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9tena
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lophocampa ingens Edwards, 1881",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0393171-210914110416597/datasets/export for details.
DOI: 10.15468/dl.eeghtw
title: Occurrence Download

description: A dataset containing 292326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tussilago farfara L."
 ]
}

 The dataset includes 292326 records from 814 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043142-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.17170994
title: A genome-wide association study of total child psychiatric problems scores: summary statistics

description: Summary statistics for EAGLE GWAS on total child psychiatric problems scores.
<br>
Data is provided in R binary format and can be loaded within R with load("total_child_psychiatric_GWAS.Rdata").
<br>
snp: SNP RS ID
effect_allele: Effect allele
other_allele: Other allele
beta: Change in total psychiatric problem score in SD per number of effect allele
se: Standard Error
p: p-value
n: Sample Size
<br>
For more information, see PLOS ONE publication:
<br>
Neumann A, Nolte IM, [...], Hartman C & Tiemeier H. A genome-wide association study of total child psychiatric problems  scores. PloS one. 2022 Aug 22;17(8):e0273116. https://doi.org/10.1371/journal.pone.0273116
<br>
Abstract:
Substantial genetic correlations have been reported across psychiatric disorders and numerous cross-disorder genetic variants have been detected. To identify the genetic variants underlying general psychopathology in childhood, we performed a genome-wide association study using a total psychiatric problem score. We analyzed 6,844,199 common SNPs in 38,418 school-aged children from 20 population-based cohorts participating in the EArly Genetics and Lifecourse Epidemiology (EAGLE) consortium. The SNP heritability of total psychiatric problems was 5.4% (SE=0.01) and two loci reached genome-wide significance: rs10767094 and rs202005905. We also observed an association of <em>SBF2</em>, a gene associated with neuroticism in previous GWAS, with total psychiatric problems. The genetic effects underlying the total psychiatric problem score were shared with known genetic variants for common psychiatric disorders only (attention-deficit/hyperactivity disorder, anxiety, depression, insomnia) (r<sub>G</sub> &gt; 0.49), but not with autism or the less common adult disorders (schizophrenia, bipolar disorder, or eating disorders) (r<sub>G</sub> &lt; 0.01). Importantly, the total psychiatric problem score also showed at least a moderate genetic correlation of with intelligence, educational attainment, wellbeing, smoking, and body fat (r<sub>G</sub> &gt; 0.29).The results suggest that many common genetic variants are associated with childhood psychiatric symptoms and related phenotypes in general instead of with specific symptoms. Further research is needed to establish causality and pleiotropic mechanisms between psychiatric disorders and related traits.
<br>
<br>
<br>
DOI: 10.6084/m9.figshare.7209671
title: SND1 acts as an anti-apoptotic factor via regulating the expression of lncRNA <i>UCA1</i> in hepatocellular carcinoma

description: Multifunctional SND1 (staphylococcal nuclease and tudor domain containing 1) protein is reportedly associated with different types of RNA molecules, including mRNA, miRNA, pre-miRNA, and dsRNA. SND1 has been implicated in a number of biological processes in eukaryotic cells, including cell cycle, DNA damage repair, proliferation, and apoptosis. However, the specific molecular mechanism regarding the anti-apoptotic role of SND1 in mammalian cells remains largely elusive. In this study, the analysis of the online HPA (human protein atlas) and TCGA (the cancer genome atlas) databases showed the significantly high expression of SND1 in liver cancer patients. We found that the downregulation or complete depletion of SND1 enhanced the apoptosis levels of HepG2 and SMMC-7721 cells upon stimulation with 5-Fu (5-fluorouracil), a chemotherapeutic drug for HCC (hepatocellular carcinoma). SND1 affected the 5-Fu-induced apoptosis levels of HCC cells by modulating the expression of <i>UCA1</i> (urothelial cancer associated 1), which is a lncRNA (long non-coding RNA). Moreover, MYB (MYB proto-oncogene, transcription factor) may be involved in the regulation of SND1 in <i>UCA1</i> expression. In summary, our study identified SND1 as an anti-apoptotic factor in hepatocellular carcinoma cells via the modulation of lncRNA <i>UCA1</i>, which sheds new light on the relationship between SND1 protein and lncRNA.
DOI: 10.6084/m9.figshare.7209671.v1
title: SND1 acts as an anti-apoptotic factor via regulating the expression of lncRNA <i>UCA1</i> in hepatocellular carcinoma

description: Multifunctional SND1 (staphylococcal nuclease and tudor domain containing 1) protein is reportedly associated with different types of RNA molecules, including mRNA, miRNA, pre-miRNA, and dsRNA. SND1 has been implicated in a number of biological processes in eukaryotic cells, including cell cycle, DNA damage repair, proliferation, and apoptosis. However, the specific molecular mechanism regarding the anti-apoptotic role of SND1 in mammalian cells remains largely elusive. In this study, the analysis of the online HPA (human protein atlas) and TCGA (the cancer genome atlas) databases showed the significantly high expression of SND1 in liver cancer patients. We found that the downregulation or complete depletion of SND1 enhanced the apoptosis levels of HepG2 and SMMC-7721 cells upon stimulation with 5-Fu (5-fluorouracil), a chemotherapeutic drug for HCC (hepatocellular carcinoma). SND1 affected the 5-Fu-induced apoptosis levels of HCC cells by modulating the expression of <i>UCA1</i> (urothelial cancer associated 1), which is a lncRNA (long non-coding RNA). Moreover, MYB (MYB proto-oncogene, transcription factor) may be involved in the regulation of SND1 in <i>UCA1</i> expression. In summary, our study identified SND1 as an anti-apoptotic factor in hepatocellular carcinoma cells via the modulation of lncRNA <i>UCA1</i>, which sheds new light on the relationship between SND1 protein and lncRNA.
DOI: 10.5281/zenodo.10276405
title: A molecular Density Functional Theory for associating fluids in 3D geometries - J. Chem. Phys. (2023)

description: A new free-energy functional is proposed for inhomogeneous associating fluids. The general formulation of Wertheim's thermodynamic perturbation theory is considered as the starting point of the derivation. We apply the hypotheses of the statistical associating fluid theory in the classical density functional theory (DFT) framework to obtain a tractable expression of the free-energy functional for inhomogeneous associating fluids. Specific weighted functions are introduced in our framework to describe association interactions for a fluid under confinement. These weighted functions have a mathematical structure similar to the weighted densities of the fundamental-measure theory (\textit{i.e.}, they can be expressed as convolution products), such that they can be efficiently evaluated with Fourier transforms in a 3D space. The resulting free-energy functional can be employed to determine the microscopic structure of inhomogeneous associating fluids of arbitrary 3D geometry. The new model is first compared with Monte Carlo simulations and previous versions of DFT for a planar hard wall system in order to check its consistency in a 1D case. As an example of application in a 3D configuration, we investigate then the extreme confinement of an associating hard-sphere fluid inside an anisotropic open cavity with a shape that mimics a simplified model of zeolite. Both the density distribution and the corresponding molecular bonding profile are given, revealing complementary information to understand the structure of the associating fluid inside the cavity network. The impact of the degree of association on the preferential positions of the molecules inside the cavity is investigated as well as the competition between  association and steric effect on adsorption.
DOI: 10.5281/zenodo.10276406
title: A molecular Density Functional Theory for associating fluids in 3D geometries - J. Chem. Phys. (2023)

description: A new free-energy functional is proposed for inhomogeneous associating fluids. The general formulation of Wertheim's thermodynamic perturbation theory is considered as the starting point of the derivation. We apply the hypotheses of the statistical associating fluid theory in the classical density functional theory (DFT) framework to obtain a tractable expression of the free-energy functional for inhomogeneous associating fluids. Specific weighted functions are introduced in our framework to describe association interactions for a fluid under confinement. These weighted functions have a mathematical structure similar to the weighted densities of the fundamental-measure theory (\textit{i.e.}, they can be expressed as convolution products), such that they can be efficiently evaluated with Fourier transforms in a 3D space. The resulting free-energy functional can be employed to determine the microscopic structure of inhomogeneous associating fluids of arbitrary 3D geometry. The new model is first compared with Monte Carlo simulations and previous versions of DFT for a planar hard wall system in order to check its consistency in a 1D case. As an example of application in a 3D configuration, we investigate then the extreme confinement of an associating hard-sphere fluid inside an anisotropic open cavity with a shape that mimics a simplified model of zeolite. Both the density distribution and the corresponding molecular bonding profile are given, revealing complementary information to understand the structure of the associating fluid inside the cavity network. The impact of the degree of association on the preferential positions of the molecules inside the cavity is investigated as well as the competition between  association and steric effect on adsorption.
DOI: 10.6084/m9.figshare.12452930
title: Curcumin potentiates laryngeal squamous carcinoma radiosensitivity via NF-ΚB inhibition by suppressing IKKγ expression

description: <b>Context:</b> Curcumin has shown efficacy in promoting radiosensitivity combined with radiotherapy. However, the role and mechanism of curcumin on radiosensitivity in laryngeal squamous cell cancer (LSCC) is largely unknown. <b>Objective:</b> The aim of our study is to explore the role of IKKγ-NF-κB signaling in curcumin enhancing LSCC cell radiosensitivity <i>in vitro</i>. <b>Materials and methods:</b> Curcumin and X-ray were used to induce cell DNA damage and apoptosis, or inhibit cell clone formation. IKKγ siRNA and plasmid were used to change IKKγ expression. The CCK8 assay was used to detect cell viability. Clone formation ability was analyzed using a clonogenic assay, cell apoptosis was examined using flow cytometry, an immunofluorescence assay was used to detect DNA damage, while mRNA and protein levels were assayed using real time PCR and western blotting, respectively. <b>Results:</b> Curcumin significantly enhanced irradiation-induced DNA damage and apoptosis, while weakening clone-forming abilities of LSCC cell line Hep2 and Hep2-max. Compared to Hep2 cells, Hep2-max cells are more sensitive to curcumin post-irradiation. Curcumin suppressed irradiation-induced NF-κB activation by suppressing IKKγ expression, but not IKKα and IKKβ. Overexpression of IKKγ decreased irradiation-induced DNA damage and apoptosis, while promoting clone-forming abilities of Hep2 and Hep2-max cells. IKKγ overexpression further increased expression of NF-κB downstream genes, Bcl-XL, Bcl-2, and cyclin D1. Conversely, IKKγ silencing enhanced irradiation-induced DNA damage and apoptosis, but promoted clone formation in Hep2 and Hep2-max cells. Additionally, IKKγ silencing inhibited expression of Bcl-XL, Bcl-2, and cyclin D1. <b>Conclusions:</b> Curcumin enhances LSCC radiosensitivity <i>via</i> NF-ΚB inhibition by suppressing IKKγ expression.
DOI: 10.6084/m9.figshare.12452930.v1
title: Curcumin potentiates laryngeal squamous carcinoma radiosensitivity via NF-ΚB inhibition by suppressing IKKγ expression

description: <b>Context:</b> Curcumin has shown efficacy in promoting radiosensitivity combined with radiotherapy. However, the role and mechanism of curcumin on radiosensitivity in laryngeal squamous cell cancer (LSCC) is largely unknown. <b>Objective:</b> The aim of our study is to explore the role of IKKγ-NF-κB signaling in curcumin enhancing LSCC cell radiosensitivity <i>in vitro</i>. <b>Materials and methods:</b> Curcumin and X-ray were used to induce cell DNA damage and apoptosis, or inhibit cell clone formation. IKKγ siRNA and plasmid were used to change IKKγ expression. The CCK8 assay was used to detect cell viability. Clone formation ability was analyzed using a clonogenic assay, cell apoptosis was examined using flow cytometry, an immunofluorescence assay was used to detect DNA damage, while mRNA and protein levels were assayed using real time PCR and western blotting, respectively. <b>Results:</b> Curcumin significantly enhanced irradiation-induced DNA damage and apoptosis, while weakening clone-forming abilities of LSCC cell line Hep2 and Hep2-max. Compared to Hep2 cells, Hep2-max cells are more sensitive to curcumin post-irradiation. Curcumin suppressed irradiation-induced NF-κB activation by suppressing IKKγ expression, but not IKKα and IKKβ. Overexpression of IKKγ decreased irradiation-induced DNA damage and apoptosis, while promoting clone-forming abilities of Hep2 and Hep2-max cells. IKKγ overexpression further increased expression of NF-κB downstream genes, Bcl-XL, Bcl-2, and cyclin D1. Conversely, IKKγ silencing enhanced irradiation-induced DNA damage and apoptosis, but promoted clone formation in Hep2 and Hep2-max cells. Additionally, IKKγ silencing inhibited expression of Bcl-XL, Bcl-2, and cyclin D1. <b>Conclusions:</b> Curcumin enhances LSCC radiosensitivity <i>via</i> NF-ΚB inhibition by suppressing IKKγ expression.
DOI: 10.6084/m9.figshare.24208719.v2
title: <b>Genome of the common chiton, </b><b>Liolophura japonica </b><b>(Lischke, 1873)</b>

description: Chitons (Polyplacophora) are marine molluscs that can be found worldwide from cold waters to the tropics, and play important ecological roles in the environment. Nevertheless, there remains only two chiton genomes sequenced to date. The chiton Liolophura japonica (Lischke, 1873) is one of the most abundant polyplacophorans found throughout East Asia. Our PacBio HiFi reads and OmniC sequencing data resulted in a high-quality genome assembly of ~609 Mb with a scaffold N50 length of 37.34 Mb (96.1% BUSCO). A total of 25,163 protein-coding genes were predicted, including all lophotrochozoan Hox and ParaHox genes. The repeat content (27.89%) was similar to the other Chitonidae species and approximately three times lower than in the genome of the Hanleyidae chiton. The genomic resources provided in this work will help to expand our understanding of the evolution of molluscs and the ecological adaptation of chitons.