cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19329760.v1
title: Mixed diapause duration in cohorts of four species of <i>Osmia</i> bees (Megachilidae) along an elevation and temperature gradient in Northern Utah (USA)

description: Several species of <i>Osmia</i> bees are parsivoltine, i.e., individuals of a cohort diapause for either one or two winters before emerging as adults. Frequently, contents of single nests are mixed, containing both one- and two-year morphs, commonly in an unpatterned array. We asked if the incidence of one- and two-year morphs, and mixed nests, was associated with elevation and decreasing average temperature. We also describe the arrangement of gender and year-morph of progeny within nests. Populations were sampled and reared from wood “trap-nests” at 1553–2436 m elevation at nine sites in northern Utah. Nearby weather stations supplied temperature records. Nine parsivoltine <i>Osmia</i> species were found. For the two most common species, <i>O. coloradensis</i> and <i>O. montana</i>, the percent of two-year morphs increased significantly with elevation and a decrease in average temperature. The most precipitous drop in temperature occurred between 1800 and 1930 m, the elevation span also associated with large increases in percent two-year morphs. The incidence of mixed nests was highest at intermediate elevations, and gender and year-morph were associated (females were significantly more likely than males to be two-year morphs) but only for <i>O. coloradensis</i>. For all species, the percentage of females declined from the first (innermost) to the last (outermost) brood cell in nests. We consider the merits of a diversified bet-hedging strategy as an explanation for parsivoltinism and offer a new interpretation that emphasizes the reduction in overwintering mortality, particularly of immatures produced later in the growing season, conferred by their ability to enter diapause at two distinct stages.
DOI: 10.6084/m9.figshare.19419233.v1
title: The payoffs and tradeoffs of hygienic behavior: a five year field study on a local population of honey bees

description: Honey bees are exposed to a variety of risk factors, among which the ectoparasitic mite <i>Varroa destructor</i> and its associated viruses are considered to be the most significant problem worldwide. It has been widely recognized that honey bee stocks resistant to mites are an essential part of any sustainable long-term management of Varroa. The aim of this study was to evaluate the efficacy of hygienic behavior in a local population of honey bees in reducing Varroa infestation. A bi-directional selection for high and low rates of hygienic behavior was carried out in Israel using either artificially inseminated or naturally mated queens. Colonies were screened for performance including population size, honey production, levels of Varroa infestation, and the level of hygienic behavior. Furthermore, we examined the costs and benefits of the selection, and possible trade-offs, using the above measurements of colony performance to ensure their productivity. The selection process revealed that the trait is heritable. The maternal phenotype has a significant effect on Varroa load, as colonies founded by hygienic daughter queens showed a significantly lower parasite load. No major trade-offs were found between the rate of hygienic behavior, honey yield, and population size. Measuring the direct benefits of hygienic behavior through colony performance suggests that breeding for this trait makes bees more resistant to <i>Varroa destructor</i>. These results are promising for our successful local bee breeding programs in a Mediterranean climate.
DOI: 10.6084/m9.figshare.19419233
title: The payoffs and tradeoffs of hygienic behavior: a five year field study on a local population of honey bees

description: Honey bees are exposed to a variety of risk factors, among which the ectoparasitic mite <i>Varroa destructor</i> and its associated viruses are considered to be the most significant problem worldwide. It has been widely recognized that honey bee stocks resistant to mites are an essential part of any sustainable long-term management of Varroa. The aim of this study was to evaluate the efficacy of hygienic behavior in a local population of honey bees in reducing Varroa infestation. A bi-directional selection for high and low rates of hygienic behavior was carried out in Israel using either artificially inseminated or naturally mated queens. Colonies were screened for performance including population size, honey production, levels of Varroa infestation, and the level of hygienic behavior. Furthermore, we examined the costs and benefits of the selection, and possible trade-offs, using the above measurements of colony performance to ensure their productivity. The selection process revealed that the trait is heritable. The maternal phenotype has a significant effect on Varroa load, as colonies founded by hygienic daughter queens showed a significantly lower parasite load. No major trade-offs were found between the rate of hygienic behavior, honey yield, and population size. Measuring the direct benefits of hygienic behavior through colony performance suggests that breeding for this trait makes bees more resistant to <i>Varroa destructor</i>. These results are promising for our successful local bee breeding programs in a Mediterranean climate.
DOI: 10.17632/7hxwsddhbg.1
title: Effects of Communication Style Anthropomorphic Setting and Individual Difference on Older Adults using Voice Assistants in the Context of Health

description: Experimental questionnaire data
DOI: 10.6084/m9.figshare.16627898
title: Comparative proteomic profile in bee- and manually-collected <i>Taraxacum officinale</i> pollen

description: The study reports a first comprehensive approach to the proteome analysis done by comparing the protein profiles characteristic of bee- and manually-collected common dandelion (<i>Taraxacum officinale</i>) pollen. Proteins isolated from the bee- and manually-collected pollen was fractionated by two-dimensional electrophoresis, visualized by staining with Colloidal Coomassie G-250, and after tryptic-digestion analysed by mass spectrometry. A computer-assisted analysis was performed for comparison of protein profile maps typical of bee- and manually-collected dandelion pollen.
DOI: 10.6084/m9.figshare.16627898.v2
title: Comparative proteomic profile in bee- and manually-collected <i>Taraxacum officinale</i> pollen

description: The study reports a first comprehensive approach to the proteome analysis done by comparing the protein profiles characteristic of bee- and manually-collected common dandelion (<i>Taraxacum officinale</i>) pollen. Proteins isolated from the bee- and manually-collected pollen was fractionated by two-dimensional electrophoresis, visualized by staining with Colloidal Coomassie G-250, and after tryptic-digestion analysed by mass spectrometry. A computer-assisted analysis was performed for comparison of protein profile maps typical of bee- and manually-collected dandelion pollen.
DOI: 10.17632/fnffrynrd6.1
title: Supplementary material

description: The figures relating to this article are available online.
DOI: 10.17632/st7f3g6mk4.1
title: SWIR spectra of basidiomycete decay of Scots pine

description: The research question was whether SWIR hyperspectral measurements can be used to characterize wood that has, to different degrees, been depolymerized by decay fungi and if it is possible to differentiate between brown rot and white rot decay i.e., two different wood depolymerization mechanisms.

The experiment has a total of 80 wood specimens of Scots pine (Pinus sylvestris L.) with dimensions 20x20x5 mm:  
- 16 reference (no fungus)  
- 32 with brown rot decay fungus: Rhodonia placenta (Fr.) Niemelä, K.H. Larss. & Schigel, strain FPRL 280
- 32 with white rot decay fungus: Trametes versicolor (L.) Lloyd, strain CTB 863 A

The level of decay is measured by the mass loss percentage, which is determined per specimen. There is a harvest every two weeks for a period of 16 weeks, i.e. 8 different decay periods, with 10 samples per period. (2 ref, 4 brown, 4 white).

One hyperspectral image of the front side and one hyperspectral image of the back side of the specimens was recorded. Two datasets were created from the hyperspectral images: The first dataset consists of one spectrum for each specimen and consists of 80 spectra. The second dataset consists of one spectrum for each image and therefore consists of 160 spectra.

Each dataset is in a separate MATLAB file. The description of the data sets is in the enclosed README file.
DOI: 10.6084/m9.figshare.16627898.v1
title: Comparative proteomic profile in bee- and manually-collected <i>Taraxacum officinale</i> pollen

description: The study reports a first comprehensive approach to the proteome analysis done by comparing the protein profiles characteristic of bee- and manually-collected common dandelion (<i>Taraxacum officinale</i>) pollen. Proteins isolated from the bee- and manually-collected pollen was fractionated by two-dimensional electrophoresis, visualized by staining with Colloidal Coomassie G-250, and after tryptic-digestion analysed by mass spectrometry. A computer-assisted analysis was performed for comparison of protein profile maps typical of bee- and manually-collected dandelion pollen.
DOI: 10.17632/cnjkhtc4kj.1
title: Data for Stable hole-free, carbon-based CsPbI3 perovskite solar cells achieving 12.45 %-efficiency at a low temperature with Mn doping and excess CsBr simultaneously

description: I-V for the solar cell with the best performance
DOI: 10.17632/pfrrkgs878.1
title: Lockett et al 2022 (ALAN propomotes boom-up changes in a woodland food chain)

description: Data for Lockett et al (2022) Artificial light at night promotes bottom-up changes in a woodland food chain, Environmental Pollution, in press, https://doi.org/10.1016/j.envpol.2022.119803
DOI: 10.17632/bn627zbymx.1
title: A conserved motif suggests a common origin for a group of proteins involved in the cell division of Gram-positive bacteria

description: The clustermap, sequences and structural models used for our new paper, in which we describe the discovery of the DivIVA-like superfamily of proteins (will be linked here when published). The clustermap provides a visualization of the sequence relationships of these sequences and can be opened with CLANS (https://www.eb.tuebingen.mpg.de/protein-evolution/software/clans). The structure models were predicted with AlphaFold and can be opened with a PDB viewer, such as PyMol.
DOI: 10.17632/9bnyzwnzrc.1
title: CPTs

description: The complete conditional probability table for the improved Bayesian network is in our article “A new Bayesian network model for risk assessment based on cloud model, interval type-2 fuzzy sets and improved D-S evidence theory”
DOI: 10.17632/2xsdbdb38k.3
title: FS biochar properties

description: BET, elemental analysis, FTIR, XRD, cation exchange capacity and zeta potential data
DOI: 10.6084/m9.figshare.19478117
title: Training Data for Predicting Hemodynamics in Aortic Stenosis Patients

description: This dataset has been derived from computed-tomography based CFD simulations of the human aorta in patients with aortic valve stenosis. A total of 309 cases is presented, which are based on 103 patients. Each patient was simulated with three different flow rates (e.g. case23_01, cas23_02, case_03). _01 is the the baseline flow, _02 and _03 are ±25% of the baseline flow.The data files contain static pressure and wall-shear-stress along the aortic centerline (output sequence) as well as centerline coordinates, cross section area/shape and flow rate (input sequence). The data can be used to train an artificial neural network to predict pressure and wall-shear-stress from geometric data of patients with aortic stenosis.Two files are provided:One contains the input and output sequencesThe other contains the cross-sections in MATLAB cell format. Each cell holds an image stack with each image representing one cross-section for that case. Each cell in the file corresponds to the case in the sequence files. E.g. cell no. 22 in the Matlab file contains the cross sections for case case22_01 case22_02 and 22_03.
DOI: 10.5281/zenodo.6949308
title: Intercomparison of Convective-Aggregation States with two Cloud Resolving Models: DATASET

description: Radiative-Convective Equilibrium (RCE) is an important modeling paradigm for the tropical atmosphere. In this paradigm, cloud clustering can occur spontaneously, affecting the energy budget of the atmosphere. Here, two models, run in RCE, exhibiting this convective aggregation have been compared with each other and with the results of the Radiative-Convective Equilibrium Model Intercomparison Project (RCEMIP). The two models studied, the SAM (System for Atmospheric Modeling) and the ARPS (Advanced Regional Prediction System), are different in the physical and numerical formulation, allowing us to compare the sensitivity to processes related to the phenomenon of convective organization. In General, the two models present similarities in what concerns precipitation, warming, and drying of the atmosphere and anvil cloud area reduction. All these factors are also within the spread of the RCEMIP values. However, the two models differ both in the convective organization feedback and in the degree of organization. SAM is strongly organized and ARPS is weakly organized. SAM achieves convective organization through clouds-radiative feedback and ARPS achieves it through moisture-convection feedback. These differences can be traced back to the interaction between the microphysics and the sub-cloud layer properties. We suggest that when studying climate sensitivity, climate models should include both types of convective organization mechanisms.
description: In this Data Repository only the SAM output is reported as follow: - OUT_2D_SAM contains the 2D output of SAM (every 24 h) - OUT_3D_SAM contains the 3D output of SAM (every 24 h) - OUT_STAT_SAM contains the statistics output (every 24 h) The output of ARPS is in a companion repository in Zenodo
DOI: 10.5281/zenodo.6949307
title: Intercomparison of Convective-Aggregation States with two Cloud Resolving Models: DATASET

description: Radiative-Convective Equilibrium (RCE) is an important modeling paradigm for the tropical atmosphere. In this paradigm, cloud clustering can occur spontaneously, affecting the energy budget of the atmosphere. Here, two models, run in RCE, exhibiting this convective aggregation have been compared with each other and with the results of the Radiative-Convective Equilibrium Model Intercomparison Project (RCEMIP). The two models studied, the SAM (System for Atmospheric Modeling) and the ARPS (Advanced Regional Prediction System), are different in the physical and numerical formulation, allowing us to compare the sensitivity to processes related to the phenomenon of convective organization. In General, the two models present similarities in what concerns precipitation, warming, and drying of the atmosphere and anvil cloud area reduction. All these factors are also within the spread of the RCEMIP values. However, the two models differ both in the convective organization feedback and in the degree of organization. SAM is strongly organized and ARPS is weakly organized. SAM achieves convective organization through clouds-radiative feedback and ARPS achieves it through moisture-convection feedback. These differences can be traced back to the interaction between the microphysics and the sub-cloud layer properties. We suggest that when studying climate sensitivity, climate models should include both types of convective organization mechanisms.
description: In this Data Repository only the SAM output is reported as follow: - OUT_2D_SAM contains the 2D output of SAM (every 24 h) - OUT_3D_SAM contains the 3D output of SAM (every 24 h) - OUT_STAT_SAM contains the statistics output (every 24 h) The output of ARPS is in a companion repository in Zenodo
DOI: 10.7284/111928
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise PE12-31 using a SeaBird SBE-911+ instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105653
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-11-04 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105575
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-11-04 using a SeaBird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105613
title: Gyrocompass data collected during research cruise SAV-11-04 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105490
title: Meteorological Station data collected during research cruise SAV-11-04 using a RMYoung 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105675
title: Singlebeam Echosounder data collected during research cruise SAV-11-04 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105533
title: TSG (Thermosalinograph) data collected during research cruise SAV-11-04 using a SeaBird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20411007
title: Diploid_genome_assembly

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 169 Kb. On average, 9.82% genome region was annotated as repetitive elements, and 12,059 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.20411007.v2
title: Diploid_genome_assembly

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 169 Kb. On average, 9.82% genome region was annotated as repetitive elements, and 12,059 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.20411007.v1
title: Diploid_genome_assembly

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 169 Kb. On average, 9.82% genome region was annotated as repetitive elements, and 12,059 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in manakins, containing 585 to 751 genes and an ~600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that a possible Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.7284/105655
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise SAV-11-07 using a RDI WM-300 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25625/kke7cu
title: Enrichment plots (EFForTS-B08): Decomposition

description: Leaf litter decompostion
DOI: 10.7284/105578
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise SAV-11-07 using a SeaBird SBE-25 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105616
title: Gyrocompass data collected during research cruise SAV-11-07 using a Yokogawa CMZ700B instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105493
title: Meteorological Station data collected during research cruise SAV-11-07 using a RMYoung 26800 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105678
title: Singlebeam Echosounder data collected during research cruise SAV-11-07 using a Furuno FCV-582 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/105536
title: TSG (Thermosalinograph) data collected during research cruise SAV-11-07 using a SeaBird SBE-21 instrument system onboard the platform RV Savannah

description: Original (unprocessed) data collected during a Field_expedition