cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/22c3f2d7f5be9769b052a0771a3d2549
title: Jornada Basin LTER: Wireless meteorological station at NPP T-EAST site: Daily average soil volumetric water content data: 2013 - ongoing

description: Daily average of 30-minute Volumetric Water Content at NPP T-EAST met station. Collection of soil volumetric water content data at Jornada LTER NPP sites, New Mexico, supports the environmental monitoring objectives of the Jornada LTER monitoring program that look at plant-soil water dynamics. Volumetric water content, bulk electrical conductivity, soil temperature, and bulk dielectric permittivity are measured and calculated at an automated meteorological station installed at Jornada LTER NPP T-EAST site. The daily average at 3 soil depths is calculated from measurements made every 30 minutes at 10 cm, 20 cm, and 30 cm. This is an ONGOING dataset.
DOI: 10.6084/m9.figshare.5099518
title: Table S5: KEGG functional analysis of <i>Wigglesworthia</i> genes from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes all predicted coding sequences from the <i>Wigglesworthia</i> genome with their associated KEGG functional category and relative expression value within the bacteriome specific RNA-Seq library.
DOI: 10.6084/m9.figshare.5099518.v2
title: Table S5: KEGG functional analysis of <i>Wigglesworthia</i> genes from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes all predicted coding sequences from the <i>Wigglesworthia</i> genome with their associated KEGG functional category and relative expression value within the bacteriome specific RNA-Seq library.
DOI: 10.6084/m9.figshare.5099518.v1
title: Table S6: Annotation and differential expression of <i>Glossina</i> genes with bacteriome enriched expression from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table lists the <i>Glossina</i> genes with bacteriome enriched expression. Each gene is listed with its functional annotations based upon BLAST analysis, predictions of enzymatic activity based on KEGG analysis, Enrichment based on LOX analysis and its differential expression in aposymbiotic guts or trypanosome infected guts as determined by edgeR analysis.
DOI: 10.6084/m9.figshare.5099482
title: Table S8: Hemolymph metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured hemolymph. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5099482.v2
title: Table S8: Hemolymph metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured hemolymph. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5099482.v1
title: Table S9: Differential expression of <i>Glossina</i> enzyme coding genes in control and aposymbiotic flies from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table lists the differential expression of <i>Glossina</i> enzyme coding genes between control and aposymbiotic gut RNA-seq libraries. The table includes the genes, associated KEGG EC code, annotation and results of the differential expression analysis by edgeR.
DOI: 10.6084/m9.figshare.5099506
title: Table S6: Annotation and differential expression of <i>Glossina</i> genes with bacteriome enriched expression from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table lists the <i>Glossina</i> genes with bacteriome enriched expression. Each gene is listed with its functional annotations based upon BLAST analysis, predictions of enzymatic activity based on KEGG analysis, Enrichment based on LOX analysis and its differential expression in aposymbiotic guts or trypanosome infected guts as determined by edgeR analysis.
DOI: 10.6084/m9.figshare.5099506.v2
title: Table S6: Annotation and differential expression of <i>Glossina</i> genes with bacteriome enriched expression from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table lists the <i>Glossina</i> genes with bacteriome enriched expression. Each gene is listed with its functional annotations based upon BLAST analysis, predictions of enzymatic activity based on KEGG analysis, Enrichment based on LOX analysis and its differential expression in aposymbiotic guts or trypanosome infected guts as determined by edgeR analysis.
DOI: 10.6084/m9.figshare.5099506.v1
title: Table S7: Bacteriome metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured bacteriome tissue. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5099521
title: Table S1: Transcriptomic and metabolomic datasets utilized in this study from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table contains the individual RNA-seq and metabolomic data sets utilized in this paper. Associated SRA numbers of tables are listed.
DOI: 10.6084/m9.figshare.5099521.v1
title: Table S2: Mapping Statistics of bacteriome RNA-Seq Reads to <i>Wigglesworthia</i> and <i>Glossina</i> Genomes from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table contains the breakdown of read mappings from the bacteriome specific RNA-Seq library to <i>Glossina</i>, bacterial and viral sequences. Details on the percent of reads associated with <i>Glossina</i> and <i>Wigglesworthia</i> and their association with functional genome annotations are included.
DOI: 10.6084/m9.figshare.5099521.v2
title: Table S1: Transcriptomic and metabolomic datasets utilized in this study from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table contains the individual RNA-seq and metabolomic data sets utilized in this paper. Associated SRA numbers of tables are listed.
DOI: 10.6084/m9.figshare.5099488
title: Table S7: Bacteriome metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured bacteriome tissue. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5099488.v2
title: Table S7: Bacteriome metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks.

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured bacteriome tissue. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5099488.v1
title: Table S8: Hemolymph metabolome data from Unravelling the relationship between the tsetse fly and its obligate symbiont <i>Wigglesworthia</i>: transcriptomic and metabolomic landscapes reveals highly integrated physiological networks

description: This table includes the data on metabolites detected by untargeted analysis of control and symbiont cured hemolymph. Each metabolite is listed and color coded according to its differential abundance under symbiont cured conditions.
DOI: 10.6084/m9.figshare.5100334
title: 2d4d ratio - Left hand data from A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans.

description: 2nd and 4th digit measurements in the left hand
DOI: 10.6084/m9.figshare.5100334.v1
title: 2d4d ratio - Left hand data from A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans

description: 2nd and 4th digit measurements in the left hand
DOI: 10.6084/m9.figshare.5100343
title: 2d4d ratio - Right hand data from A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans.

description: 2nd and 4th digit measurements in the right hand
DOI: 10.6084/m9.figshare.5100343.v2
title: 2d4d ratio - Right hand data from A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans.

description: 2nd and 4th digit measurements in the right hand
DOI: 10.6084/m9.figshare.5100343.v1
title: 2d4d ratio - Right hand data from A comprehensive allometric analysis of 2nd digit length to 4th digit length in humans

description: 2nd and 4th digit measurements in the right hand
DOI: 10.6084/m9.figshare.5107231
title: Additional file S2 Alignments of BGDs and GBAs from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release.

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.6084/m9.figshare.5107231.v2
title: Additional file S2 Alignments of BGDs and GBAs from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release.

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.6084/m9.figshare.5107231.v1
title: Additional file S2 Alignments of BGDs and GBAs from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some Arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.6084/m9.figshare.5107201
title: Additional file S3 from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release.

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.6084/m9.figshare.5107201.v2
title: Additional file S3 from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release.

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.6084/m9.figshare.5107201.v1
title: Additional file S3 from Spatial separation of the cyanogenic β-glucosidase ZfBGD2 and cyanogenic glucosides in the haemolymph of <i>Zygaena</i> larvae facilitates cyanide release

description: Low molecular weight compounds are typically used by insects and plants for defence against predators. They are often stored as inactive β-glucosides and kept separate from activating β-glucosidases. When the two components are mixed, the β-glucosides are hydrolysed releasing toxic aglucones. Cyanogenic plants contain cyanogenic glucosides and release hydrogen cyanide due to such a well-characterized two-component system. Some Arthropods are also cyanogenic, but comparatively little is known about their system. Here, we identify a specific β-glucosidase (<i>ZfBGD2)</i> involved in cyanogenesis from larvae of <i>Zygaena filipendulae</i> (Lepidoptera, Zygaenidae), and analyse the spatial organization of cyanide release in this specialized insect. High levels of <i>ZfBGD2</i> mRNA and protein were found in haemocytes by transcriptomic and proteomic profiling. Heterologous expression in insect cells showed that ZfBGD2 hydrolyses linamarin and lotaustralin, the two cyanogenic glucosides present in <i>Z. filipendulae</i>. Linamarin and lotaustralin as well as cyanide release were found exclusively in the haemoplasma. Phylogenetic analyses revealed that <i>ZfBGD2</i> clusters with other insect β-glucosidases, and correspondingly, the ability to hydrolyse cyanogenic glucosides catalysed by a specific β-glucosidase evolved convergently in insects and plants. The spatial separation of the β-glucosidase ZfBGD2 and its cyanogenic substrates within the haemolymph provides the basis for cyanide release in <i>Z. filipendulae</i>. This spatial separation is similar to the compartmentalization of the two components found in cyanogenic plant species, and illustrates one similarity in cyanide-based defence in these two kingdoms of life.
DOI: 10.5281/zenodo.3628599
title: EPMA data supporting Vieira Duarte et al. (2020)

description: This dataset contains EPMA mineral data (olivine, orthopyroxene, clinopyroxene, spinel, and amphibole) acquired for this study on hornblende-bearing hydrous mylonites from the northern shear zone of Lanzo Massif (Italian Western Alps). Linked to article: https://doi.org/10.1029/2020JB019509
DOI: 10.5281/zenodo.3628598
title: EPMA data supporting Vieira Duarte et al. (2020)

description: This dataset contains EPMA mineral data (olivine, orthopyroxene, clinopyroxene, spinel, and amphibole) acquired for this study on hornblende-bearing hydrous mylonites from the northern shear zone of Lanzo Massif (Italian Western Alps). Linked to article: https://doi.org/10.1029/2020JB019509
DOI: 10.6084/m9.figshare.5117812
title: Supplementary Raw Data from Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage.

description: Contains raw data for this study
DOI: 10.6084/m9.figshare.5117812.v2
title: Supplementary Raw Data from Exposure to the leaf litter microbiome of healthy adults protects seedlings from pathogen damage.

description: Contains raw data for this study
DOI: 10.5517/ccdc.csd.cc20jcyw
title: CCDC 1862788: Experimental Crystal Structure Determination

description: Related Article: Zhe Ji, Christopher A. Trickett, Xiaokun Pei, Omar M. Yaghi|2018|J.Am.Chem.Soc.|140|13618|doi:10.1021/jacs.8b09807
DOI: 10.25505/fiz.icsd.cc20jkrw
title: CSD 1862968: Experimental Crystal Structure Determination

description: Related Article: Robin Niklaus, Lukas Neudert, Juliane Stahl, Peter J. Schmidt, Wolfgang Schnick|2018|Inorg.Chem.|57|14304|doi:10.1021/acs.inorgchem.8b02391