cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/134072
title: Meteorological Station data collected during research cruise EN642 using a RM Young 26800 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7600103.v3
title: 3D files of Brazilichthys macrognathus (Actinopterygii)

description: This dataset includes .ply files and tomograms of the cranial anatomy of <i>Brazilichthys macrognathus</i>, obtained by microtomography.Submitted to the Journal of Vertebrate Paleontology.
DOI: 10.7284/134069
title: Radiometer data collected during research cruise EN642 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7600103.v4
title: 3D files of Brazilichthys macrognathus (Actinopterygii)

description: This dataset includes .ply files and tomograms of the cranial anatomy of <i>Brazilichthys macrognathus</i>, obtained by microtomography.Submitted to the Journal of Vertebrate Paleontology.
DOI: 10.6084/m9.figshare.7600073
title: Do geology field courses improve penetrative thinking?

description: Geoscientists use spatial thinking skills in many common tasks, such as adding a third dimension to two-dimensional maps by drawing cross-sections or envisioning rock fabrics from a single hand sample or exposure. Field courses allow students to practice and develop those skills in authentic settings. This study examines the development of spatial perception and geoscience-specific penetrative thinking skills, as measured by paired pre- and posttests using the water-level test and the Geologic Block Cross-Sectioning Test, in a sophomore field mapping course. Students began the course with strong spatial perception skills, but developed their penetrative thinking skills significantly (<i>p</i>
DOI: 10.6084/m9.figshare.7600073.v1
title: Do geology field courses improve penetrative thinking?

description: Geoscientists use spatial thinking skills in many common tasks, such as adding a third dimension to two-dimensional maps by drawing cross-sections or envisioning rock fabrics from a single hand sample or exposure. Field courses allow students to practice and develop those skills in authentic settings. This study examines the development of spatial perception and geoscience-specific penetrative thinking skills, as measured by paired pre- and posttests using the water-level test and the Geologic Block Cross-Sectioning Test, in a sophomore field mapping course. Students began the course with strong spatial perception skills, but developed their penetrative thinking skills significantly (<i>p</i>
DOI: 10.7284/134070
title: Radiometer data collected during research cruise EN642 using a Eppley RAD instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7600070
title: Virtual field experiences in introductory geology: Addressing a capacity problem, but finding a pedagogical one

description: Recent literature has demonstrated the importance of fieldwork in geology. However, as resources become scarce, field experiences are often targeted for cuts. This was the case at the University of Calgary when massive enrollments placed a tremendous burden on resources. In courses throughout, field trips and other excursions were eliminated, making it so students do not have any field experiences until their third year. In response, we have developed three virtual field experiences (VFEs) of geologically relevant locations near Calgary. A burgeoning technology, VFEs offer advantages of convenience and versatility when compared to actual field trips. Our VFEs comprise drone-captured images used to form high-resolution 2-D photomosaics and 3-D computer models. We piloted one VFE in an introductory geology course. We wanted to understand how students engaged with the models so that we could make the VFE as effective as possible. Observing student engagement over two iterations allowed us to make changes to the activity. We found that students had difficulties with the VFE’s open endedness. They also demonstrated difficulty with the relationship between observations and inferences. This is indicative of a broader issue with how geology (or science in general) is taught. Traditional instruction in geology places great emphasis on the “what” of geology as opposed to the “how.” We contend that teaching geology with more emphasis on how geology works will help students develop a better understanding of the relationship between inference and observation, enhancing their fieldwork and their understanding of science.
DOI: 10.7284/134078
title: Singlebeam Echosounder data collected during research cruise EN642 using a Knudsen 320B/R instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7600070.v1
title: Virtual field experiences in introductory geology: Addressing a capacity problem, but finding a pedagogical one

description: Recent literature has demonstrated the importance of fieldwork in geology. However, as resources become scarce, field experiences are often targeted for cuts. This was the case at the University of Calgary when massive enrollments placed a tremendous burden on resources. In courses throughout, field trips and other excursions were eliminated, making it so students do not have any field experiences until their third year. In response, we have developed three virtual field experiences (VFEs) of geologically relevant locations near Calgary. A burgeoning technology, VFEs offer advantages of convenience and versatility when compared to actual field trips. Our VFEs comprise drone-captured images used to form high-resolution 2-D photomosaics and 3-D computer models. We piloted one VFE in an introductory geology course. We wanted to understand how students engaged with the models so that we could make the VFE as effective as possible. Observing student engagement over two iterations allowed us to make changes to the activity. We found that students had difficulties with the VFE’s open endedness. They also demonstrated difficulty with the relationship between observations and inferences. This is indicative of a broader issue with how geology (or science in general) is taught. Traditional instruction in geology places great emphasis on the “what” of geology as opposed to the “how.” We contend that teaching geology with more emphasis on how geology works will help students develop a better understanding of the relationship between inference and observation, enhancing their fieldwork and their understanding of science.
DOI: 10.7284/134075
title: Speedlog data collected during research cruise EN642 using a Furuno DS-50 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134077
title: Timeserver data collected during research cruise EN642 using a Spectracom SecureSync instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7600001
title: Dy(III) complexes of metformin Schiff-bases as glucose probe: synthesis, spectral, and thermal properties

description: Complexes of Dy<sup>3+</sup> with metformin-Schiff-bases of salicylaldehyde (HL<sup>1</sup>); 2,3-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>2</sup>); 2,4-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>3</sup>); 2,5-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>4</sup>); 3,4-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>5</sup>); and 2-hydroxynaphthaldehyde (HL<sup>6</sup>) were synthesized by template reactions. The new compounds were characterized through elemental analysis, conductivity and magnetic moment measurements, IR, UV–vis, fluorescence, GC–MS, and XRD spectroscopies. The complexes are seven coordinate with formulas [DyL<sup>1–4,6</sup>(NO<sub>3</sub>)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub>]·<i>n</i>H<sub>2</sub>O where <i>n</i> = 2, 2½, 4, 2, 2 and [DyL<sup>5</sup>(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>4</sub>]·2H<sub>2</sub>O. TGA, DTG, and DTA analyses confirmed the suggested stereochemistry and subsequently the proposed mechanism of thermal decomposition. Kinetic and thermodynamic parameters were calculated for the second decomposition step. Thus, we report the ability of using the prepared complexes in the detection of glucose at physiological conditions using UV–vis and fluorescence spectroscopy as well as viscosity measurements, where the association constants were calculated.
DOI: 10.7284/134071
title: TSG (Thermosalinograph) data collected during research cruise EN642 using a Sea-Bird SBE-45 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134079
title: TSG (Thermosalinograph) data collected during research cruise EN642 using a Sea-Bird SBE-21 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599941
title: Database from Improving the propulsion speed of a heaving wing through artificial evolution of shape

description: Experimental database which includes the locomotion speed of the 150 wings tested, along with the set of mathematical parameters or ‘genes’ that defines each wing shape.
DOI: 10.6084/m9.figshare.7600001.v1
title: Dy(III) complexes of metformin Schiff-bases as glucose probe: synthesis, spectral and thermal properties

description: Complexes of Dy<sup>3+</sup> with metformin-Schiff-bases of salicylaldehyde (HL<sup>1</sup>); 2,3-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>2</sup>); 2,4-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>3</sup>); 2,5-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>4</sup>); 3,4-dihydroxybenzaldehyde (H<sub>2</sub>L<sup>5</sup>); and 2-hydroxynaphthaldehyde (HL<sup>6</sup>) were synthesized by template reactions. The new compounds were characterized through elemental analysis, conductivity and magnetic moment measurements, IR, UV-Vis, fluorescence, GC-MS, and XRD spectroscopies. The complexes are seven coordinate with formulas DyL<sup>1,4,6</sup>(NO<sub>3</sub>)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub>]·nH<sub>2</sub>O where n = 2, 2½, 4, 2, 2 and [DyL<sup>5</sup>(NO<sub>3</sub>)(H<sub>2</sub>O)<sub>4</sub>]·2H<sub>2</sub>O. TGA, DTG, and DTA analyses confirmed the suggested stereochemistry and subsequently the proposed mechanism of thermal decomposition. Kinetic and thermodynamic parameters were calculated for the second decomposition steps. Thus, we report the ability of using the prepared complexes in the detection of glucose at physiological conditions using UV-Vis and fluorescence spectroscopy as well as viscosity measurements, where the association constants were calculated.
DOI: 10.6084/m9.figshare.7599923
title: Raw data for Antirival ARGONAUTE protein during TCV infection revealed by Image-based trait analysis in Arabidopsis

description: Raw RGB images of Col-0, dcl2 dcl3 dcl4 and ten single ago mutants under TCV infection. <br><br>Output images and analysis results of the images mentioned above via the image-based disease trait phenotyping pipeline.<br>
DOI: 10.6084/m9.figshare.7599941.v1
title: Database from Improving the propulsion speed of a heaving wing through artificial evolution of shape

description: Experimental database which includes the locomotion speed of the 150 wings tested, along with the set of mathematical parameters or ‘genes’ that defines each wing shape.
DOI: 10.7284/134081
title: Winch data collected during research cruise EN642 using a PHE Endeavor instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134082
title: Winch data collected during research cruise EN642 using a SMATCO Endeavor SMATCO instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599902
title: Fraxinus excelsior microsatellite genotypes

description: Microsatellite genotypes of <i>Fraxinus excelsior </i>(European ash) from Stirling, Scotland and Manchester, England.<br>Griffiths SM, Galambao M, Rowntree JK, Goodhead I, Hall J, Atkinson N & Antwis RE (2019) Complex associations between cross‐kingdom microbial endophytes and host genotype in ash dieback disease dynamics. Journal of Ecology. doi: 10.1111/1365-2745.13302
DOI: 10.6084/m9.figshare.7599893
title: CANdata.zip

description: Funded by Jaguar Land Rover and EPSRC grant.1221 signals times by 72 files of anonymised time series vehicle data. <br>rescaledDataAll.csv contains all data from the other files, it is a copy of them in the same format, just pasted together.
DOI: 10.7284/134084
title: Winch data collected during research cruise EN642 using a Markey DUSH-5 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599902.v1
title: Fraxinus excelsior microsatellite genotypes

description: Microsatellite genotypes of <i>Fraxinus excelsior </i>(European ash) from Stirling, Scotland and Manchester, England.<br>Griffiths SM, Galambao M, Rowntree JK, Goodhead I, Hall J, Atkinson N & Antwis RE (2019) Complex associations between cross‐kingdom microbial endophytes and host genotype in ash dieback disease dynamics. Journal of Ecology. doi: 10.1111/1365-2745.13302
DOI: 10.6084/m9.figshare.7599830
title: summerdays

description: Data which has been used for the plot of summerdays in the ems-2018 extended abstract<br>
DOI: 10.6084/m9.figshare.7599830.v1
title: summerdays

description: Data which has been used for the plot of summerdays in the ems-2018 extended abstract<br>
DOI: 10.7284/134024
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise EN643 using a Hawaii UHDAS instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599821
title: frostdays

description: Data from the plot used in the extended abstract EMS-2018 <br>
DOI: 10.6084/m9.figshare.7599809
title: data-scatter-plots

description: Data used for the scatter-plots in the ems-2018 extended abstract<br>
DOI: 10.7284/134039
title: Anemometer data collected during research cruise EN643 using a Gill Windsonic instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599767
title: SourceData.zip

description: This file file contains the source data for the Figure 1.Fig1A_GPS.txt contains the GPS coordinates of all samples we investigated. Fig1A_PopStructure.xlsx contains the results from fastStructure analysis. These two files were used to generate the panel A using the R package rworldmap.Fig1B_SP68g.chr.gds is the source data for plotting the panel B using the R package: SNPRelate.Fig1C_LDSvedFitted.txt contains the source data for generating the panel C.<br>
DOI: 10.6084/m9.figshare.7599809.v1
title: data-scatter-plots

description: Data used for the scatter-plots in the ems-2018 extended abstract<br>
DOI: 10.6084/m9.figshare.7599815
title: Figures

description: Figures Purkinje after infarction
DOI: 10.6084/m9.figshare.7599821.v1
title: frostdays

description: Data from the plot used in the extended abstract EMS-2018 <br>
DOI: 10.6084/m9.figshare.7599746
title: drydays

description: Data which is used for the extended abstract ems-2018 for the change of dry days &lt;1 mm/day<br>
DOI: 10.6084/m9.figshare.7599749
title: winter precipitation

description: Data files which are used for figure 5 in the extended abstract ems-2018<br>
DOI: 10.6084/m9.figshare.7599752
title: The role of chromosome changes in the diversification of <i>Passiflora</i> L. (Passifloraceae)

description: <i>Passiflora</i> L. has more than 575 species distributed especially in the Neotropics. The chromosome number variation in the genus is highly congruent with its main subgenera, but its basic chromosome number (<i>x</i>) and the underlying events responsible for this variation have remained controversial. Here, we provide a robust and well-resolved time-calibrated phylogeny that includes 102 taxa, and by means of phylogenetic comparative methods (PCM) we tested the relative importance of polyploidy and dysploidy events to <i>Passiflora</i> karyotype evolution and diversification. <i>Passiflora</i> arose 42.9 Mya, with subgenus diversification at the end of the Palaeogene (Eocene-Oligocene). The basic chromosome number of the genus is proposed as <i>x</i> = 6, and a strong recent diversification found in the <i>Passiflora</i> subgenus (Miocene) correlated to genome size increase and a chromosome change from <i>n</i> = 6 to <i>n</i> = 9 by ascending dysploidy. Polyploidy, conversely, appeared restricted to few lineages, such as <i>Astrophea</i> and <i>Deidamioides</i> subgenera, and did not lead to diversification increases. Our findings suggest that ascending dysploidy provided a great advantage for generating long-term persistent lineages and promoting species diversification. Thus, chromosome numbers/genome size changes may have contributed to morphological/ecological traits that explain the pattern of diversification observed in the genus <i>Passiflora</i>.
DOI: 10.7284/134042
title: Anemometer data collected during research cruise EN643 using a Gill Windsonic instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599815.v2
title: Figures

description: Figures Purkinje after infarction
DOI: 10.6084/m9.figshare.7599746.v1
title: drydays

description: Data which is used for the extended abstract ems-2018 for the change of dry days &lt;1 mm/day<br>
DOI: 10.6084/m9.figshare.7599752.v1
title: The role of chromosome changes in the diversification of <i>Passiflora</i> L. (Passifloraceae)

description: <i>Passiflora</i> L. has more than 575 species distributed especially in the Neotropics. The chromosome number variation in the genus is highly congruent with its main subgenera, but its basic chromosome number (<i>x</i>) and the underlying events responsible for this variation have remained controversial. Here, we provide a robust and well-resolved time-calibrated phylogeny that includes 102 taxa, and by means of phylogenetic comparative methods (PCM) we tested the relative importance of polyploidy and dysploidy events to <i>Passiflora</i> karyotype evolution and diversification. <i>Passiflora</i> arose 42.9 Mya, with subgenus diversification at the end of the Palaeogene (Eocene-Oligocene). The basic chromosome number of the genus is proposed as <i>x</i> = 6, and a strong recent diversification found in the <i>Passiflora</i> subgenus (Miocene) correlated to genome size increase and a chromosome change from <i>n</i> = 6 to <i>n</i> = 9 by ascending dysploidy. Polyploidy, conversely, appeared restricted to few lineages, such as <i>Astrophea</i> and <i>Deidamioides</i> subgenera, and did not lead to diversification increases. Our findings suggest that ascending dysploidy provided a great advantage for generating long-term persistent lineages and promoting species diversification. Thus, chromosome numbers/genome size changes may have contributed to morphological/ecological traits that explain the pattern of diversification observed in the genus <i>Passiflora</i>.
DOI: 10.7284/134025
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise EN643 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134023
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN643 using a Ashtech ADU2 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599674
title: Supplementary Material for: CD14 Counterregulates Lipopolysacharide-Induced Tumor Necrosis Factor-α Production in a Macrophage Subset

description: In response to GM-CSF or M-CSF, macrophages (MΦ) can acquire pro- or anti-inflammatory properties, respectively. Given the importance of CD14 and Toll-like receptor (TLR) 4 in lipopolysaccharide (LPS)-induced signaling, we studied the effect of anti-CD14 antibody mediated CD14 blockade on LPS-induced cytokine production, signal transduction and on the expression levels of CD14 and TLR4 in GM-MΦ and M-MΦ. We found M-MΦ to express higher levels of both surface antigens and to produce more interferon (IFN)-β and interleukin-10, but less tumor necrosis factor (TNF)-α than GM-MΦ. Blockage of CD14 at high LPS concentrations increased the production of proinflammatory cytokines and decreased that of IFN-β in M-MΦ but not in GM-MΦ. We show that phosphorylation states of signaling molecules of the MyD88 (myeloid differentiation primary response 88), TRIF (TIR-domain-containing adapter-inducing IFN-β) and MAPK (mitogen-activated protein kinase) pathways are not altered in any way that would account for the cytokine overshoot reaction. However, CD14 blockage in M-MΦ decreased TLR4 and CD14 expression levels, regardless of the presence of LPS, indicating that the loss of the surface molecules prevented LPS from initiating TRIF signaling. As TNF-α synthesis was even upregulated under these experimental conditions, we suggest that TRIF is normally involved in restricting LPS-induced TNF-α overproduction. Thus, surface CD14 plays a decisive role in the biological response by determining LPS-induced signaling.
DOI: 10.7284/134032
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN643 using a Northstar 952 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7599647
title: Enhancement of biological effectiveness of carbon-ion beams by applying a longitudinal magnetic field

description: <b>Purpose:</b> A magnetic field longitudinal to an ion beam will potentially affect the biological effectiveness of the radiation. The purpose of this study is to experimentally verify the significance of such effects. <b>Methods and materials:</b> Human cancer and normal cell lines were exposed to low (12 keV/<i>μ</i>m) and high (50 keV/<i>μ</i>m) linear energy transfer (LET) carbon-ion beams under the longitudinal magnetic fields of <i>B</i><sub>//</sub> = 0, 0.1, 0.2, 0.3, or 0.6 T generated by a solenoid magnet. The effects of the magnetic fields on the biological effectiveness were evaluated by clonogenic cell survival. Doses that would result in a survival fraction of 10% (<i>D</i><sub>10</sub>s) were determined for each cell line and magnetic field. <b>Results:</b> For cancer cells exposed to the low (high)-LET beams, <i>D</i><sub>10</sub> decreased from 5.2 (3.1) Gy at 0 T to 4.3 (2.4) Gy at 0.1 T, while no further decrease in <i>D</i><sub>10</sub> was observed for higher magnetic fields. For normal cells, decreases in <i>D</i><sub>10</sub> of comparable magnitudes were observed by applying the magnetic fields. <b>Conclusions:</b> Significant decreases in <i>D</i><sub>10</sub>, i.e. significant enhancements of the biological effectiveness, were observed in both cancer and normal cells by applying longitudinal magnetic fields of <i>B</i><sub>//</sub> ≥ 0.1 T. These effects were enhanced with LET. Further studies are required to figure out the mechanism underlying the observed results.
DOI: 10.7284/134033
title: GNSS (Global Navigation Satellite System) data collected during research cruise EN643 using a Furuno GP-33 instrument system onboard the platform RV Endeavor

description: Original (unprocessed) data collected during a Field_expedition