cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.24085269.v1
title: Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse skin (jrc_mus-skin-1)

description: <b>Sample:</b> Skin tissue from a wild-type, postnatal day 7 mouse, strain: C57BL/6J from Jackson Lab<b>Sample Description:</b> A dataset featuring isotropic 3D electron microscopy data of mouse skin. The sample was obtained from a wild-type postnatal day 7 C57BL/6J mouse strain sourced from Jackson Laboratory. Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia). This dataset offers a comprehensive view of young mouse skin cellular architecture.<b>Protocol:</b> Mouse anesthesia was performed as IACUC guidelines. Perfusion fixation with glutaraldehyde and vibratome section. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.<b>Contributions:</b> Sample provided by Wei-Ping Li (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia) and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<b>Acquisition ID:</b> jrc_mus-skin-1<b>Voxel size (nm):</b> 8 x 8 x 8 (x, y, z)<b>Data dimensions (µm): </b>138.40 x 114.22 x 157.60 (x, y, z)<b>Imaging start date:</b> 2023-07-06<b>Imaging duration (days):</b> 25<b>Scanning speed (MHz): </b>3<b>Dataset URL: </b>s3://janelia-cosem-datasets/jrc_mus-skin-1/jrc_mus-skin-1.zarr/recon-1/em/<b>Visualization Website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-skin-1<b>Publication: </b>Xu et al., 2017<br>
DOI: 10.5281/zenodo.10124594
title: Tensile2d: 2D quasistatic non-linear structural mechanics solutions, under geometrical variations

description: This dataset contains 2D quasistatic non-linear structural mechanics solutions, under geometrical variations. 

A Description is provided in the MMGP paper Sections 4.1 and A.2.

The file format is PLAID, see the plaid documentation.

The variablity in the samples are 6 input scalars and the geometry (mesh). Outputs of interest are 4 scalars and 6 fields.

Seven nested training sets of sizes 8 to 500 are provided, with complete input-output data. A testing set of size 200, as well as two out-of-distribution sample, are provided, for which outputs are not provided.  

 

Tips to access the data:

After decompressing the downloaded file:

 

dataset = Dataset()problem = ProblemDefinition()

problem._load_from_dir_(os.path.join(/path/to/data,'problem_definition'))dataset._load_from_dir_(os.path.join(/path/to/data,'dataset'), verbose = True)

print("problem =", problem)print("dataset =", dataset)

sample = dataset[0]print("sample =", sample)

for fn in sample.get_field_names():    print(f"{fn} =", sample.get_field(fn))for sn in sample.get_scalar_names():    print(f"{sn} =", sample.get_scalar(sn))

print("nodes =", sample.get_nodes())print("elements =", sample.get_elements())print("nodal_tags =", sample.get_nodal_tags())
DOI: 10.5281/zenodo.12515084
title: AirfRANS_original

description: This dataset is a new version of the dataset originally made available through the library and described in the paper.

It is in PLAID format.

A ML4PhySim_Challenge_train split is provided, corresponding to the training set of the ML4PhySim challenge.

It has 2 variants:



AirfRANS_remeshed

AirfRANS_clipped
DOI: 10.25378/janelia.23411843.v1
title: Near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of P7 mouse pancreas (jrc_mus-pancreas-4)

description: <b>Sample: </b>Pancreas from a postnatal day 7 transgenic mouse with tdTomato-neurons, strain: C57BL/6J from Jackson Lab.<b>Sample Description: </b>A dataset featuring isotropic 3D electron microscopy data of the mouse pancreas (jrc_mus-pancreas-4). The sample was obtained from a P7, wild-type C57BL/6 mouse strain sourced from Jackson Laboratory. The sample was prepared with perfusion fixation with glutaraldehyde and vibratome section. The region of Interest (ROI) was determined by insulin, glucagon, endogenous neurons multi-labelling. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven. The sample was provided by Wei-Ping Li (HHMI/Janelia), immunofluorescent microscopy by Isabel Espinosa-Medina (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia), and imaged by Wei Qiu (HHMI/Janelia). Post-processing was conducted by Eric Trautman and Stephan Preibisch (HHMI/Janelia). This dataset offers a comprehensive view of a young mouse pancreas cellular architecture and facilitates further research in digestive and endocrine systems and beyond.<b>Protocol: </b>Perfusion fixation with glutaraldehyde and vibratome section. Region of Interest (ROI) was determined by insulin, glucagon, endogenous neurons multi-labelling. After low temperature reducing OTO staining, the sample was subject to dehydration, infiltration with graded ethanol and Durcupan resin, and polymerized in a 60°C oven.<b>Contributions: </b>Sample provided by Wei-Ping Li (HHMI/Janelia), immunofluorescent microscopy by Isabel Espinosa-Medina (HHMI/Janelia), prepared for imaging by Zhiyuan Lu (HHMI/Janelia) and imaged by Wei Qiu (HHMI/Janelia) and post-processing by Eric Trautman and Stephan Preibisch (HHMI/Janelia).<b>Acquisition ID:</b> jrc_mus-pancreas-4<b>Voxel size (nm):</b> 4.0 x 4.0 x 4.0 (X, Y, Z)<b>Data dimensions (µm): </b>146.272, 113.04 , 115.048 (X, Y, Z)<b>Imaging start date:</b> 2023-04-18<b>Dataset URL (Redirect): </b>https://data.janelia.org/5MsI5<b>Visualization Website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-pancreas-4<b>Imaging duration (days): </b>23<b>Landing energy (eV):</b><b>Imaging current (nA):</b><b>Scanning speed (MHz):</b> 3
DOI: 10.60712/si-id155320.1
title: StrainInfo SI-ID 155320.1

description: StrainInfo dataset 155320 about a strain of Nectriella pironii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155321.1
title: StrainInfo SI-ID 155321.1

description: StrainInfo dataset 155321 about a strain of Apiognomonia errabunda. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155164.1
title: StrainInfo SI-ID 155164.1

description: StrainInfo dataset 155164 about a strain of Ceratocystis adiposa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155165.1
title: StrainInfo SI-ID 155165.1

description: StrainInfo dataset 155165 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155166.1
title: StrainInfo SI-ID 155166.1

description: StrainInfo dataset 155166 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155225.1
title: StrainInfo SI-ID 155225.1

description: StrainInfo dataset 155225 about a strain of Sparassis crispa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155226.1
title: StrainInfo SI-ID 155226.1

description: StrainInfo dataset 155226 about a strain of Ilyonectria liriodendri. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155227.1
title: StrainInfo SI-ID 155227.1

description: StrainInfo dataset 155227 about a strain of Fusarium merismoides var. merismoides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155228.1
title: StrainInfo SI-ID 155228.1

description: StrainInfo dataset 155228 about a strain of Utharomyces epallocaulus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155322.1
title: StrainInfo SI-ID 155322.1

description: StrainInfo dataset 155322 about a strain of Umbelopsis nana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155323.1
title: StrainInfo SI-ID 155323.1

description: StrainInfo dataset 155323 about a strain of Umbelopsis nana. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.g9996j
title: Occurrence Download

description: A dataset containing 13531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coreopsis tinctoria Nutt.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13531 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080696-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id155324.1
title: StrainInfo SI-ID 155324.1

description: StrainInfo dataset 155324 about a strain of Parachaetomium carinthiacum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155325.1
title: StrainInfo SI-ID 155325.1

description: StrainInfo dataset 155325 about a strain of Arthrobotrys musiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155167.1
title: StrainInfo SI-ID 155167.1

description: StrainInfo dataset 155167 about a strain of Ophiostoma angusticollis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155168.1
title: StrainInfo SI-ID 155168.1

description: StrainInfo dataset 155168 about a strain of Raffaelea deltoideospora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155169.1
title: StrainInfo SI-ID 155169.1

description: StrainInfo dataset 155169 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155170.1
title: StrainInfo SI-ID 155170.1

description: StrainInfo dataset 155170 about a strain of Jamesreidia tenella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155229.1
title: StrainInfo SI-ID 155229.1

description: StrainInfo dataset 155229 about a strain of Valsa friesii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155230.1
title: StrainInfo SI-ID 155230.1

description: StrainInfo dataset 155230 about a strain of Arthrobotrys musiformis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155231.1
title: StrainInfo SI-ID 155231.1

description: StrainInfo dataset 155231 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155326.1
title: StrainInfo SI-ID 155326.1

description: StrainInfo dataset 155326 about a strain of Drechslerella dactyloides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155327.1
title: StrainInfo SI-ID 155327.1

description: StrainInfo dataset 155327 about a strain of Phaeosclera dematioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155328.1
title: StrainInfo SI-ID 155328.1

description: StrainInfo dataset 155328 about a strain of Penicillium malacaense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155330.1
title: StrainInfo SI-ID 155330.1

description: StrainInfo dataset 155330 about a strain of Talaromyces islandicus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.9d23ah
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Thailand",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Macaca nemestrina (Linnaeus, 1766)",
 "Year 2000-2024"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080699-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id155171.1
title: StrainInfo SI-ID 155171.1

description: StrainInfo dataset 155171 about a strain of Jamesreidia tenella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155172.1
title: StrainInfo SI-ID 155172.1

description: StrainInfo dataset 155172 about a strain of Stemphylium vesicarium. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155173.1
title: StrainInfo SI-ID 155173.1

description: StrainInfo dataset 155173 about a strain of Alternaria eureka. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155174.1
title: StrainInfo SI-ID 155174.1

description: StrainInfo dataset 155174 about a strain of Alternaria angustiovoidea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155232.1
title: StrainInfo SI-ID 155232.1

description: StrainInfo dataset 155232 about a strain of Bipolaris stenospila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155233.1
title: StrainInfo SI-ID 155233.1

description: StrainInfo dataset 155233 about a strain of Harzia tenella. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155234.1
title: StrainInfo SI-ID 155234.1

description: StrainInfo dataset 155234 about a strain of Septoria helianthicola. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155235.1
title: StrainInfo SI-ID 155235.1

description: StrainInfo dataset 155235 about a strain of Septoria helianthi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155332.1
title: StrainInfo SI-ID 155332.1

description: StrainInfo dataset 155332 about a strain of Talaromyces minioluteus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155334.1
title: StrainInfo SI-ID 155334.1

description: StrainInfo dataset 155334 about a strain of Penicillium valentinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155236.1
title: StrainInfo SI-ID 155236.1

description: StrainInfo dataset 155236 about a strain of Ovadendron sulphureoochraceum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155335.1
title: StrainInfo SI-ID 155335.1

description: StrainInfo dataset 155335 about a strain of Penicillium onobense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155237.1
title: StrainInfo SI-ID 155237.1

description: StrainInfo dataset 155237 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155238.1
title: StrainInfo SI-ID 155238.1

description: StrainInfo dataset 155238 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155239.1
title: StrainInfo SI-ID 155239.1

description: StrainInfo dataset 155239 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155336.1
title: StrainInfo SI-ID 155336.1

description: StrainInfo dataset 155336 about a strain of Penicillium vasconiae. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155338.1
title: StrainInfo SI-ID 155338.1

description: StrainInfo dataset 155338 about a strain of Penicillium terraconense. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155339.1
title: StrainInfo SI-ID 155339.1

description: StrainInfo dataset 155339 about a strain of Talaromyces allahabadensis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155340.1
title: StrainInfo SI-ID 155340.1

description: StrainInfo dataset 155340 about a strain of Trichonectria rectipila. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155381.1
title: StrainInfo SI-ID 155381.1

description: StrainInfo dataset 155381 about a strain of Chalaropsis thielavioides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155382.1
title: StrainInfo SI-ID 155382.1

description: StrainInfo dataset 155382 about a strain of Dictyoarthrinium sacchari. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id155240.1
title: StrainInfo SI-ID 155240.1

description: StrainInfo dataset 155240 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.