cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/d2ap1-s9s05
title: U2OS-periphery

description: Raw data files of U2OS-periphery
description: <strong>Tilt Series Date:</strong> 2018-06-22</p>
<strong>Data Taken By:</strong> Wei Zhao</p>
<strong>Species / Specimen:</strong> U2OS</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-1/rawdata/</p>ts1.mrc,  Tilt Series (Pixel Size 0.431 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-1/rawdata/ts1.mrc"
        > <i class="download icon"></i> Download </a></p>

        ts1.rec,  Reconstruction (Pixel Size 0.0 nm), 127.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wza2018-06-22-1/3dimage_92982/ts1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cwgc7-1wz81
title: Rat INS-1E pancreatic beta cells

description: Raw data files of Rat INS-1E pancreatic beta cells
description: <strong>Tilt Series Date:</strong> 2019-10-23</p>
<strong>Data Taken By:</strong> Xianjun Zhang</p>
<strong>Species / Specimen:</strong> Rat INS-1E pancreatic beta cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-23-37/rawdata/</p>tomo37.mrc,  Tilt Series (Pixel Size 0.0 nm), 2.8 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomo37.rec,  Reconstruction (Pixel Size 0.0 nm), 421.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-10-23-37/3dimage_121677/tomo37.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/e5f1q-mxj54
title: Rat INS-1E pancreatic beta cells

description: Raw data files of Rat INS-1E pancreatic beta cells
description: <strong>Tilt Series Date:</strong> 2019-12-19</p>
<strong>Data Taken By:</strong> Xianjun Zhang</p>
<strong>Species / Specimen:</strong> Rat INS-1E pancreatic beta cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/xzj2019-12-19-12/rawdata/</p>tomo22.mrc,  Tilt Series (Pixel Size 0.0 nm), 2.7 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tomo22.rec,  Reconstruction (Pixel Size 0.0 nm), 401.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/b8r8c-wsz78
title: H. pylori

description: YWC265
description: <strong>Tilt Series Date:</strong> 2018-06-04</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 33000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2018-06-04-18/rawdata/</p>square1_targets1_tilt.mrc,  Tilt Series (Pixel Size 0.4319 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        square1_targets1_tilt_part121_3.rec,  Reconstruction (Pixel Size 1.7276 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.vj36md
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zosterops albogularis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044074-250811113504898/datasets/export for details.
DOI: 10.22002/20pb2-dbc15
title: Project: storage_granules

description: Session notes:  Tilt series of intact R. eutropha cells from for 2.5hrs in minimal media. Tilt series notes: Decent number of granules of varied size in an intact bug. Tomogram notes: Really long, snaking fibre at (287,229,200) slice x10. Another one lying against side of membrane at (353,591,186) slice x10. Finally, a large vesicle visibly connected to the inner membrane at (688,746,204) slice x10.
description: <strong>Tilt Series Date:</strong> 2009-03-27</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Cupriavidus necator</p>
<strong>Strain:</strong> H16</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
  mba2009-03-27-17_slicer9384.jpg: Ralstonia eutropha .  Membrane nested vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-03-27-17/rawdata/</p>09mar27c_b819_1_012.st,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar27c_b819_1_012.rec,  Reconstruction (Pixel Size 1.9 nm), 221.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.3pceh2
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantago lanceolata",
 "Country is Brazil",
 "HasCoordinate is true"
 ]
}

 The dataset includes 77 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044073-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1281q-c4p72
title: Vibrio fischeri

description: Session notes: Vibrio fischeri WT flagella, binned 4x total then filtered 0.28 (= 4.6nm resolution cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-17</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Vibrio fischeri</p>
<strong>Strain:</strong> ES114</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-12-17-21_slicer6357.jpg: Secretion system
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-17-21/rawdata/</p>11dec17c_WTVFischeri_0007.st,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11dec17c_WTVFischeri_0007.rec,  Reconstruction (Pixel Size 0.644 nm), 180.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.5517/ccdc.csd.cc2nd6jt
title: CCDC 2454596: Experimental Crystal Structure Determination

description: Related Article: Ashlyn Kamin, Sebastian Krajewski, Werner Kaminsky, Dianne Xiao|2025|CSD Communication|||
description: Related Article: Ashlyn A. Kamin|2025|Thesis|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/n2dw9-vz481
title: Bacillus subtilis

description: Session notes: B. subtilis L-forms number 13 Tilt series notes: Single curious cell with ripples around edge Tomogram notes: Difficult to see whats going on.
description: <strong>Tilt Series Date:</strong> 2010-12-01</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-12-01-2/rawdata/</p>10dec01a_Lforms2_011.st,  Tilt Series (Pixel Size 1.192 nm), 2.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2010-12-01-2/rawdata/10dec01a_Lforms2_011.st"
        > <i class="download icon"></i> Download </a></p>

        10dec01a_Lforms2_011.rec,  Reconstruction (Pixel Size 2.384 nm), 233.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/zzrtf-k4c84
title: Salmonella typhimurium

description: Session notes: Salmonella fliS knockout minicells Tilt series notes: Minicell with many flagella Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-02-03</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-02-03-1/rawdata/</p>11feb03c_fliS_010.st,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        11feb03c_fliS_010.rec,  Reconstruction (Pixel Size 1.548 nm), 106.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/d0fdg-cpm41
title: Salmonella typhimurium

description: Session notes: FliL deletion (plus T3SS) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-11-23</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-11-23-23_slicer7022.jpg: new envelope mba2011-11-23-23_slicer7024.jpg: filament
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-23/rawdata/</p>11nov23a_fliL_0025.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-23/rawdata/11nov23a_fliL_0025.st"
        > <i class="download icon"></i> Download </a></p>

        11nov23a_fliL_0025.rec,  Reconstruction (Pixel Size 1.036 nm), 412.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.25ug9u
title: Occurrence Download

description: A dataset containing 439051 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-121.92499 42.18233,-123.39127 42.17335,-123.39733 41.74984,-121.80987 41.73628,-121.92499 42.18233))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 439051 records from 382 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044006-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/4kgwm-xvz77
title: Salmonella typhimurium

description: Session notes: FliL deletion (plus T3SS) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-11-23</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Salmonella typhimurium</p>
<strong>Strain:</strong> serovar Typhimurium str. LT2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: -1.5°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-11-23-35_slicer5367.jpg: Budding vesicle and extracellular vesicle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-11-23-35/rawdata/</p>11nov23a_fliL_0003.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        11nov23a_fliL_0003.rec,  Reconstruction (Pixel Size 1.036 nm), 412.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fy441-rfg13
title: Campylobacter jejuni

description: Session notes: Auto-reconstruct 0.28, 0.025; auto-erase golds; SIRT reconstruction Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-04-23</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-04-23-10_slicer6410.jpg: Pilli
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-23-10/rawdata/</p>12apr23b_pflA_0016.st,  Tilt Series (Pixel Size 0.774 nm), 743.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-04-23-10/rawdata/12apr23b_pflA_0016.st"
        > <i class="download icon"></i> Download </a></p>

        12apr23b_pflA_0016.rec,  Reconstruction (Pixel Size 1.56 nm), 119.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/07ja7-d2s54
title: Campylobacter jejuni

description: Session notes: Titan Krios dataset Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-08-29</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 15.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-08-29-13_slicer4273.jpg: Flagella motor mba2012-08-29-13_slicer4274.jpg: Chemoreceptors
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-08-29-13/3dimage_23175/</p>CJejuni_Tomo_28.rec,  Reconstruction (Pixel Size 0.5797 nm), 198.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        CJejuni_Tomo_28.st,  Tilt Series (Pixel Size 0.512 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-08-29-13/rawdata/CJejuni_Tomo_28.st"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jfm15-sp110
title: Campylobacter jejuni

description: Session notes: Campy cjj0413 deletions Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2012-09-28</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: -1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2012-09-28-7_slicer5736.jpg: Flagellar motor mba2012-09-28-7_slicer5739.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2012-09-28-7/rawdata/</p>12sep28a_cjj0413_0010.st,  Tilt Series (Pixel Size 0.512 nm), 630.6 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        12sep28a_cjj0413_0010.rec,  Reconstruction (Pixel Size 1.12 nm), 47.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.rzzwdx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Harttia merevari)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044075-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/yhzpe-mgv41
title: Project: peptidoglycan

description: Session notes: Dosage and defocus trials Tilt series notes: notes Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2009-01-03</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> subsp. subtilis str. 168</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: 6.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-01-03-8/rawdata/</p>09jan03b_grid1_001.mrc,  Tilt Series (Pixel Size 0.782 nm), 738.2 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-01-03-8/rawdata/09jan03b_grid1_001.mrc"
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        09jan03b_grid1_001.rec,  Reconstruction (Pixel Size 0.782 nm), 260.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2009-01-03-8/3dimage_8626/09jan03b_grid1_001.rec"
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