cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2n3kq2
title: CCDC 2446294: Experimental Crystal Structure Determination

description: Related Article: Dexin Liu, Andrew Victoria, Alexander Mariscal, Jay Conces, Sandra Mampilly, Yunpeng Cui, Lukasz Wojtas, Jianfeng Cai, Wenqi Liu|2025|Chem.-Eur.J.|31|e03496|doi:10.1002/chem.202503496
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n53yx
title: CCDC 2447789: Experimental Crystal Structure Determination

description: Related Article: Ilenia D'Abbrunzo, Francesca Beltrame, Lara Gigli, Nicola Demitri, Cinzia Cepek, Ferdinando Bassato, Giuseppe Procida, Dario Voinovich, Beatrice Perissutti|2025|RSC Pharmaceutics|3|117|doi:10.1039/d5pm00225g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.pzgmsbchv
title: Data from: Quantitative genetics of the use of conspecific and heterospecific social cues for breeding site choice

description: Social information use for decision-making is common and affects
 ecological and evolutionary processes, including social aggregation,
 species coexistence and cultural evolution. Despite increasing ecological
 knowledge on social information use, very little is known about its
 genetic basis and therefore its evolutionary potential. Genetic variation
 in a trait affecting an individual's social and non-social
 environment may have important implications for population dynamics,
 interspecific interactions and for expression of other, environmentally
 plastic traits. We estimated repeatability, additive genetic variance and
 heritability of the use of conspecific and heterospecific social cues
 (abundance and breeding success) for breeding site choice in a population
 of wild collared flycatchers Ficedula albicollis. Repeatability was found
 for two social cues: previous year conspecific breeding success and
 previous year heterospecific abundance. Yet, additive genetic variances
 for these two social cues, and thus heritabilities, were low. This
 suggests that most of the phenotypic variation in the use of social cues
 and resulting conspecific and heterospecific social environment
 experienced by individuals in this population stems from phenotypic
 plasticity. Given the important role of social information use on
 ecological and evolutionary processes, more studies on genetic versus
 environmental determinism of social information use are needed.
description: The dataset was collected by following collared flycatchers and
 great tits breeding in nest boxes on Gotland, Sweden. The field data has
 been further prepared for the uploaded form as described in the
 <em>Data preparation </em>section and online supporting
 information of the related paper (Tolvanen et al. 2020 Quantitative
 genetics of the use of conspecific and heterospecific social cues for
 breeding site choice, Evolution).
description: The pedigree data
 ("Pedigree.csv") contains <em>pruned</em> pedigree
 specific for the phenotypic data set used. The
 phenotypic data ("PhenoData.csv") contains the response
 variables in the first five columns (note that some contain missing
 values), followed by the fixed and random effect variables used in the
 analyses.
DOI: 10.5517/ccdc.csd.cc2n53zy
title: CCDC 2447790: Experimental Crystal Structure Determination

description: Related Article: Ilenia D'Abbrunzo, Francesca Beltrame, Lara Gigli, Nicola Demitri, Cinzia Cepek, Ferdinando Bassato, Giuseppe Procida, Dario Voinovich, Beatrice Perissutti|2025|RSC Pharmaceutics|3|117|doi:10.1039/d5pm00225g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n1q0g
title: CCDC 2444505: Experimental Crystal Structure Determination

description: Related Article: Enrico Spoletti, Ricardo Albarran Velo, Greta Camilla Magnano, Chiara Cappuccino, Daniel O'Nolan, Lilia Croitor, Dario Voinovich, Beatrice Perissutti, Matteo Lusi|2025|RSC Pharmaceutics|3|180|doi:10.1039/d5pm00149h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n1q1h
title: CCDC 2444506: Experimental Crystal Structure Determination

description: Related Article: Enrico Spoletti, Ricardo Albarran Velo, Greta Camilla Magnano, Chiara Cappuccino, Daniel O'Nolan, Lilia Croitor, Dario Voinovich, Beatrice Perissutti, Matteo Lusi|2025|RSC Pharmaceutics|3|180|doi:10.1039/d5pm00149h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2n1q2j
title: CCDC 2444507: Experimental Crystal Structure Determination

description: Related Article: Enrico Spoletti, Ricardo Albarran Velo, Greta Camilla Magnano, Chiara Cappuccino, Daniel O'Nolan, Lilia Croitor, Dario Voinovich, Beatrice Perissutti, Matteo Lusi|2025|RSC Pharmaceutics|3|180|doi:10.1039/d5pm00149h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.7m0cfxprn
title: Maps of northern peatland extent, depth, carbon storage and nitrogen storage

description: This dataset is grids of peatland extent, peat depth,
 peatland organic carbon storage, peatland total nitrogen
 storage and approximate extent of ombrotrophic/minerotrophic
 peatlands.  The grids are geotiff files in 10 km pixel resolution
 projected in the World Azimuthal Equidistant projection. Note that the
 peat depth grid shows potential peat depth everywhere,also where there is
 no peatland cover. For files on peatland organic carbon, total
 nitrogen extent and extent of ombrotrophic/minerotrophic
 peatlands, there are separate files for Histosols (non-frozen peatlands)
 and Histels (frozen peatlands). For further details on how the data was
 created we refer to the paper by Hugelius et al (2020) in the journal
 Proceedings of the National Academy of Sciences of the United States of
 America: "Large stocks of peatland carbon and nitrogen are vulnerable
 to permafrost thaw"
 (https://www.pnas.org/cgi/doi/10.1073/pnas.1916387117)
description: For further details on how the data was created we refer to the
 paper by Hugelius et al (2020) in the journal Proceedings of the National
 Academy of Sciences of the United States of America: "Large stocks of
 peatland carbon and nitrogen are vulnerable to permafrost
 thaw" (https://www.pnas.org/cgi/doi/10.1073/pnas.1916387117)
DOI: 10.5061/dryad.4f4qrfj8z
title: Data from: Daily nest predation rates decrease with body size in passerine birds

description: Body size evolution is generally framed by the benefits of being large,
 while costs are largely overlooked. An important putative cost of being
 large is the need to extend development periods, which should increase
 exposure to predation and potentially select against larger size. In
 birds, this selection pressure can be important because predation is the
 main source of offspring mortality and predators should more readily
 detect the larger nests associated with larger body sizes. Here, we show
 for diverse passerine birds across the world that, counter to
 expectations, larger species suffer lower daily nest predation rates than
 smaller species. This pattern is consistent despite latitudinal variation
 in predation and does not seem to reflect a tendency of larger species to
 use more protected nests or less exposed nest locations. Evidence instead
 suggests that larger species attack a wider array of predator sizes, which
 could reduce predation rates at nests of large-bodied species. Regardless
 of the mechanism, the lower daily nest predation rates of larger species
 yield slightly lower predation rates over the entire development period
 compared to smaller species. These results highlight the importance of
 behavior as a mechanism to alter selection pressures, and have
 implications for body size evolution.
description: <strong>Species traits dataset. </strong>Dataset containing the list of the 509 populations and 321 species of passerine birds included in the article, with the corresponding information of life-history, morphological, ecological, behavioral traits and population-level daily predation rates. The source from which information on predation rates was extracted is also specified in the dataset. <strong>Attacking behavior dataset. </strong>Dataset containing body sizes of mammal and bird predators that prey species can successfully attack.
DOI: 10.25553/9s86-7s64
title: Gateway Harmonized TILDA, Version C
DOI: 10.7291/d1c66c
title: Exploring the effects of invasion on plant morphology of purple loosestrife (Lythrum salicaria)

description: This dataset is for use in the Couse-based Undergraduate Research
 Experience (CURE) titled Effects of Invasion on Plant Morphology of Purple
 Loosestrife (Lythrum salicaria). The dataset is meant to be used
 as a practice, or ready-to-use dataset for instructors so that all
 instructors can start from the same point with the same data. If you would
 like to download additional data, or use a species other than L.
 salicaria, please visit the CUREnet website and download the Data Download
 and Cleaning Tutorial.  This CURE occurred thanks to a National
 Science Foundation grant awarded to the Biological Collections in Ecology
 and Evolution Network (BCEENET). Any opinions, findings, and conclusions
 or recommendations expressed in this material are those of the author(s)
 and do not necessarily reflect the views of the National Science
 Foundation.
description: This dataset is from iDigBio, accessed from this link. From this original dataset of 3,340 images, I subsetted the images to 800 random specimens. The images are labelled by their coreID from iDigBio. This dataset also contains a CSV with the specimen metadata. The metadata contains collection date, all relevant location information, their coreID, and the URL where the image is stored.
description: Please view the CUREnet link to access all instructional
 materials related to this undergraduate research experience. This is the
 practice dataset for that CURE. (Link to CUREnet to be udpated when it is
 available.)
DOI: 10.5061/dryad.kkwh70s2z
title: Data for: Light availability influences the intensity of nectar robbery and its effects on reproduction in a tropical shrub via multiple pathways

description: The multiple exogenous pathways by which light availability affects plant
 reproduction – e.g. via influence on attraction of mutualists and
 antagonists – remain surprisingly understudied. The light environment
 experienced by a parent can also have transgenerational effects on
 offspring via these same pathways. Methods: We evaluated a) the influence
 of light availability on floral traits in Odontonema cuspidatum , b) the
 relative importance of the pathways by which light influences nectar
 robbery and reproductive output, and c) the role of parental light
 environment in mediating these relationships. We conducted a reciprocal
 translocation experiment using clonally propagated ramets and field
 surveys of naturally-occurring plants. Main Results: Light
 availability influenced multiple floral traits, including flower number
 and nectar volume, which in turn influenced nectar robbery. But nectar
 robbery was also directly influenced by light availability, due to light
 effects on nectar robber foraging behavior or neighborhood floral context.
 Parental light environment mediated the link between light availability
 and nectar robber attraction, suggesting local adaptation to low-light
 environments in floral visitor attraction. However, we found no
 transgenerational effect on reproduction. Conclusions: Our findings
 demonstrate that exogenous pathways by which light influences plants
 (particularly through effects on floral antagonists) can complicate the
 positive relationship between light availability and plant reproduction.
 Our results are among the first to document effects of light on floral
 antagonists and clonal transgenerational effects on flower visitor
 attraction traits.
DOI: 10.5061/dryad.7wm37pvqs
title: Data from: Risk of predation on offspring reduces parental provisioning, but not flight performance or survival across early life stages

description: Developmental responses can help young animals reduce predation risk but
 can also yield costs to performance and survival in subsequent life stages
 with major implications for lifetime fitness. Compensatory mechanisms may
 evolve to offset such costs, but evidence from natural systems is largely
 lacking. In songbirds, increased nest predation risk should favour reduced
 provisioning, but also young that fledge (leave their nest) at an earlier
 age. Both responses can result in fledglings with shorter wings, reduced
 mobility, and decreased survival. Young may compensate for shorter wings
 developmentally by reallocating resources towards feather development or
 behaviourally by adjusting flight kinematics or habitat use. However,
 underfed young may lack the capacity to express these phenotypes due to
 insufficient resources or an inability to adjust allocation of resources.
 Using predation risk experiments and 29 years of observational field data,
 we test whether increased nest predation risk reduces flight performance
 and survival during the fledgling stage and explore potential mechanisms
 that might underlie these effects. We show that young from high-risk nests
 did not leave the nest earlier on average, but wing growth was slower
 likely due to observed reductions in parental feeding rates. Wings were
 shorter in high-risk nests when fledglings left the nest early. Yet,
 fledglings from high-risk nests showed improved flight performance for a
 given wing length such that flight performance at fledging did not differ
 between young from high-risk and low-risk nests. Young from high-risk
 nests may have offset the costs of shorter wings on flight performance by
 accelerating the emergence of flight feathers from their sheaths to reduce
 wing porosity, though evidence for this mechanism was mixed. Fledglings
 from high-risk nests also selected habitat with denser woody vegetation
 compared with young from low-risk nests. Together, these developmental and
 behavioural responses seem to mitigate the expected effects of increased
 nest predation risk on fledgling survival. Ultimately, our results show
 that offspring predation risk can affect parental provisioning and
 offspring morphology without major implications for performance and
 survival in subsequent life stages.
description: Datasets are formated for analyses presented in the associated
 publication.
DOI: 10.5061/dryad.kwh70rz1z
title: Data from: Non-additive association analysis using proxy phenotypes identifies novel cattle sydromes

description: Mammalian species carry ~100 loss-of-function variants per individual,
 where ~1-5 of these impact essential genes and cause embryonic lethality
 or severe disease when homozygous. The functions of the remainder are more
 difficult to resolve, though are assumed to impact fitness in less
 manifest ways.  Here, we present data behind one of the largest
 sequence-resolution screens of cattle to date, targeting discovery and
 validation of non-additive effects in 130,725 animals. We highlight six
 novel recessive loci with impacts generally exceeding the largest effect
 variants identified from additive GWAS, presenting analogues of human
 diseases and hitherto unrecognised disorders. These loci present
 compelling missense (PLCD4, MTRF1, DPF2), premature stop (MUS81), and
 splice-disrupting mutations (GALNT2, FGD4), together explaining
 substantial proportions of inbreeding depression. These results
 demonstrate that the frequency distribution of deleterious alleles
 segregating in selected species can afford sufficient power to directly
 map novel disorders, presenting selection opportunities to minimise the
 incidence of genetic disease.
description: The datasets uploaded here include genotypes and phenotypes at
 various pre- and post-processing stages, more detailed
 information regarding generation and processing of these data can be found
 in the accompanying manuscript. A summary of the uploaded datasets is
 given in the README file, note that the DNA and RNA sequence datasets used
 for sequence imputation and splice QTL analysis have been uploaded
 separately to the NCBI Sequence Read Archive.
description: Genotype, phenotype, and pedigree data are uploaded as separate
 files and should be joined using the individual identifiers common to each
 relevant fileset. Note that the files have been named using phen_*, gen_*,
 other*, and source_data* nomenclature according to the numbers and
 descriptions in the three categories outlined above . A README file is
 uploaded as part of this submission that details exact file contents and
 usage.
DOI: 10.15468/dl.ussf26
title: Occurrence Download

description: A dataset containing 54202 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ameiurus melas",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 54202 records from 307 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002444-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.hmgqnk9ds
title: Data from: A vicissicaudatan arthropod from the Silurian Herefordshire Lagerstätte, UK

description: A new arthropod, Carimersa neptuni gen. et sp. nov., is described
 from the Silurian (Wenlock Series) Herefordshire Konservat-Lagerstätte,
 UK. The head bears pedunculate eyes and five pairs of appendages.
 Triflagellate antennae are followed by two pairs of uniramous limbs each
 with an endopod bearing a pronounced gnathobasic basipod. The posterior
 two pairs of head limbs and all trunk limbs bear an endopod, exopod and
 filamentous exite. The trunk consists of ten appendage-bearing segments
 followed by an apodous abdomen of four segments. The arthropod resolves as
 sister taxon to Kodymirus and Eozetetes + Aglaspidida. It is the first
 representative of Vicissicaudata reported from the Herefordshire
 Lagerstätte and the first Silurian example with well preserved appendages.
 The preservation of a cluster of radiolarians apparently captured by the
 trunk appendages is the first direct association of predator and prey
 discovered in the Herefordshire fauna and suggests that Carimersa was a
 nektobenthic form that used its gnathobasic basipods in microdurophagy.
description: The concretion was serially ground at intervals of 30 μm apart
 from the antennae and telson which were ground at 20 μm. The surfaces were
 photographed under a thin layer of water with a Leica DFC420 digital
 camera mounted ona Leica MZ8 binocular microscope. The SPIERS software
 suite (www.spiers-software.org) was used to remove extraneous<br>material from the images and to reconstruct the VAXML 3D model.
description: VAXML dataset provides the 3D model as a series of STL files,
 supplemented by a VAXML metadata file that describes names of objects,
 suggested colours, scaling information, etc. See www.spiers-software.org
 for a description of VAXML, and a free multi-platform viewer.
 Raw data comprises ZIP files, each containing a series of images
 captured during physical-optical tomography (BMP format). Scaling for
 these images is as follows, given as pixels/mm in tomograms :
 micron-interval between tomograms. Zip files are A-D,
 from anterior (A) to posterior (D) of the specimen A:
 71 : 20<br>B: 40.5 : 30<br>C: 40.5 : 30<br>D: 71 :
 20
DOI: 10.5061/dryad.qfttdz0f3
title: Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation

description: Klebsiella species are able to colonize a wide range of
 environments and include worrisome nosocomial pathogens. Here, we sought
 to determine the abundance and infectivity of prophages
 of Klebsiella to understand how the interactions between
 induced prophages and bacteria affect population dynamics and evolution.
 We identified many prophages in the species, placing these taxa among the
 top 5% of the most polylysogenic bacteria. We selected 35 representative
 strains of the Klebsiella pneumoniae species complex to
 establish a network of induced phage–bacteria interactions. This revealed
 that many prophages are able to enter the lytic cycle, and subsequently
 kill or lysogenize closely related Klebsiella strains.
 Although 60% of the tested strains could produce phages that infect at
 least one other strain, the interaction network of all pairwise
 cross-infections is very sparse and mostly organized in modules
 corresponding to the strains’ capsule serotypes. Accordingly, capsule
 mutants remain uninfected showing that the capsule is a key factor for
 successful infections. Surprisingly, experiments in which bacteria are
 predated by their own prophages result in accelerated loss of the capsule.
 Our results show that phage infectiousness defines interaction modules
 between small subsets of phages and bacteria in function of capsule
 serotype. This limits the role of prophages as competitive weapons because
 they can infect very few strains of the species complex. This should also
 restrict phage-driven gene flow across the species. Finally, the
 accelerated loss of the capsule in bacteria being predated by their own
 phages, suggests that phages drive serotype switch in nature.