cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.m8jrpa
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bangladesh",
 "TaxonKey is Attacus Linnaeus, 1767"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001602-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z65s56
title: Occurrence Download

description: A dataset containing 331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sphenostylis stenocarpa (Hochst. ex A.Rich.) Harms)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 331 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001603-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bdyzqn
title: Occurrence Download

description: A dataset containing 7292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Strophostyles helvola (L.) Elliott)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7292 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001604-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.hqv78d
title: Distribution records of Protomyctophum bolini

description: These records of Protomyctophum bolini were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.7qwqts
title: Distribution records of Gymnoscopelus bolini

description: These records of Gymnoscopelus bolini were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dd.huwafa
title: Distribution records of Lampanyctus achirus

description: These records of Lampanyctus achirus were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dl.abvq7a
title: Occurrence Download

description: A dataset containing 1300 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Türkiye",
 "TaxonKey is Pelophylax ridibundus (Pallas, 1771)"
 ]
}

 The dataset includes 1300 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004138-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.c8dhfa
title: Distribution records of Protomyctophum andriashevi

description: These records of Protomyctophum andriashevi were downloaded from GBIF on 2019-09-11.
DOI: 10.15468/dl.byr254
title: Occurrence Download

description: A dataset containing 696 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carapus acus (Brünnich, 1768)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Specimen, Material sample)"
 ]
 }
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 696 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004139-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evucz2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tradescantia zebrina G.Don, 1855"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043782-241126133413365/datasets/export for details.
DOI: 10.15468/dl.9bzrda
title: Occurrence Download

description: A dataset containing 1014 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dichelostemma ida-maia (Alph.Wood) Greene"
 ]
}

 The dataset includes 1014 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043783-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14288231
title: Simulation trajectories for: How sensitive are protein hydration shells to electrolyte concentration and protein composition?

description: PROJECT DESCRIPTION:We used classical, atomistic molecular dynamics simulations to investigate the hydrogen bond structure of the solvation shells of 5 halophilic and 5 mesophilic proteins in low (0.15 mol/kg) and high (2 mol/kg) aqueous KCl solutions. The simulation results reveal that, despite systematic amino acid composition differences between these two types of proteins, the hydrogen bond structure in their solvation shells is similarly robust to changes in KCl concentration.

DATASET DESCRIPTION:This dataset contains 15 of the 20 production run simulation trajectories  mentioned in the indicated related publication:- proteins 1DOI-1FRD  at both KCl concentrations (proteins are identified by their pdb ID, given in the order "halophile-mesophile");- proteins 1V9E-4CNX at both KCl concentrations; - proteins 1HZ6-2KAC at both KCl concentrations;- protein 2L28 at 2 molal KCl (halophile)- protein 2ITH at both KCl concentrations (mesophile).  

Single copies of each of the simulated proteins were simulated immersed in 0.15 molal and 2 molal aqueous KCl solutions, using TIP3P water, the AMBER99SB force field for the proteins, Joung and Cheatham parameters for the ions, and modified Lennard-Jones for interactions involving carboxylate oxygens (Geraili and Vila Verde, Biophysical Journal, Volume 120, Issue 13, 2746 - 2762, and   Kashefolgheta and Vila Verde, Phys. Chem. Chem. Phys., 2017, 19, 20593-20607)

USAGE: unzip all files from the same directory, so the directory trees are preserved.Please note, that some Microsoft Windows Installations encounter some errors while extracting the zip archives due to their depth of directories. Tools like 7zip are able to extract these directories on MS Windows.

Base directory structure:     /homes/adj781h/geraili/Ph.D._Project/001.0_Protein_folding_problem/002.0_impact_of_acidic_amino_acids/003.2_Dynamics/Dynamics/'\$molecule'/'\$conc'/'\$typ'/Protein_dynamics/Run    where     - \$molecule is one of 1DOI_1FRD  1HZ6_2KAC  1V9E_4CNX 2L28_2ITH (each of the halophilic/mesophilic protein pairs)    - \$conc is either 2molal or 0.15molal and denots the KCl concentration in the aqueous solvent    - \$typ is either Halophile or Non-Halophile

RELATED DATASET: Other simulation input and other output files for the same simulations can be found in https://doi.org/10.17877/RESOLV-2024-m32ubdo9. To use these datasets together, place all *zip files in the same directory and unzip them. The directory structure will be preserved, so it will be easy to identify which input files gave origin to each trajectory.
DOI: 10.5281/zenodo.14535060
title: Example Files for pRESTO Stern JNH, Yaari G, and Vander Heiden JA, et al. 2014

description: This example uses publicly available data from:

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes.Stern JNH, Yaari G, and Vander Heiden JA, et al.Sci Transl Med. 2014. 6(248):248ra107. doi:10.1126/scitranslmed.3008879.

Which may be downloaded from the NCBI Sequence Read Archive under BioProject accession ID: PRJNA248475. For this example, we will use the first 25,000 sequences of sample M12 (accession: SRR1383456), which may downloaded downloaded using fastq-dump from the SRA Toolkit:

fastq-dump --split-files -X 25000 SRR1383456

Primers sequences are available online at the supplemental website for the publication.
DOI: 10.5281/zenodo.14535061
title: Example Files for pRESTO Stern JNH, Yaari G, and Vander Heiden JA, et al. 2014

description: This example uses publicly available data from:

B cells populating the multiple sclerosis brain mature in the draining cervical lymph nodes.Stern JNH, Yaari G, and Vander Heiden JA, et al.Sci Transl Med. 2014. 6(248):248ra107. doi:10.1126/scitranslmed.3008879.

Which may be downloaded from the NCBI Sequence Read Archive under BioProject accession ID: PRJNA248475. For this example, we will use the first 25,000 sequences of sample M12 (accession: SRR1383456), which may downloaded downloaded using fastq-dump from the SRA Toolkit:

fastq-dump --split-files -X 25000 SRR1383456

Primers sequences are available online at the supplemental website for the publication.
DOI: 10.15468/dl.f45rc9
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalembius rosaceus (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 177 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043784-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k33jtf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptothyrium quercus-rubrae Oudem."
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043785-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wc3far
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium perenne × Schedonorus arundinaceus subsp. arundinaceus"
 ]
}

 The dataset includes 23 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043787-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqqaz9
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tradescantia zebrina Loudon"
 ]
}

 The dataset includes 49 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043789-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zk64nn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Canis dingo Blumenbach, 1780, Ovis aries Linnaeus, 1758, Naemorhedus griseus (Milne-Edwards, 1871))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((118 27,123 27,123 31.25,118 31.25,118 27))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043790-241126133413365/datasets/export for details.
DOI: 10.15468/dl.punrpm
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zalieutes mcgintyi (Fowler, 1952)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 31 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043791-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6cajy9
title: Occurrence Download

description: A dataset containing 44520 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum carolinense L."
 ]
}

 The dataset includes 44520 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043788-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggw9k4
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus rubramenta Trel."
 ]
}

 The dataset includes 133 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043792-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.smpc5m
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium perenne × Schedonorus arundinaceus subsp. uechtritzianus"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043793-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqm5ze
title: Occurrence Download

description: A dataset containing 12314 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Deschampsia caespitosa P.Beauv."
 ]
}

 The dataset includes 12314 records from 402 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043794-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y54zyb
title: Occurrence Download

description: A dataset containing 120 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zameus squamulosus (Günther, 1877)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 120 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043796-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sudxcv
title: Occurrence Download

description: A dataset containing 5795 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tradescantia zebrina Bosse"
 ]
}

 The dataset includes 5795 records from 309 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043795-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7apd8
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus robur x Quercus rubra"
 ]
}

 The dataset includes 29 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043798-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wbvc6e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum carolinense Var.Floridanum"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043797-241126133413365/datasets/export for details.
DOI: 10.15468/dl.9esw23
title: Occurrence Download

description: A dataset containing 8197 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus californicus Benth."
 ]
}

 The dataset includes 8197 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043800-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ys8ugj
title: Occurrence Download

description: A dataset containing 423 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium multiflorum × perenne"
 ]
}

 The dataset includes 423 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043801-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66v8kb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Canis dingo Blumenbach, 1780, Ovis aries Linnaeus, 1758, Naemorhedus griseus (Milne-Edwards, 1871))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((118 27,123 27,123 31.25,118 31.25,118 27))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043803-241126133413365/datasets/export for details.
DOI: 10.15468/dl.xby6ur
title: Occurrence Download

description: A dataset containing 258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zaniolepis frenata Eigenmann & Eigenmann, 1889",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 258 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043802-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ern2g
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus palustris × rubra"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043804-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wunajv
title: Occurrence Download

description: A dataset containing 5927 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acacia cyclops A.Cunn. ex G.Don"
 ]
}

 The dataset includes 5927 records from 122 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043805-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b45myt
title: Occurrence Download

description: A dataset containing 278429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ulmus minor Mill."
 ]
}

 The dataset includes 278429 records from 2270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043778-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cdpnn
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "CoordinateUncertaintyInMeters 0.0-1000.0",
 "TaxonKey is Scaphoideus titanus Ball, 1932"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105719-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xan3fb
title: Occurrence Download

description: A dataset containing 2670 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lepidothrix nattereri (P.L.Sclater, 1865)"
 ]
}

 The dataset includes 2670 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003186-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7vnff
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Anthurium andraeanum Linden ex André",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038535-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fztxey
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Учет заселяемости гоголятников"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0105739-200613084148143/datasets/export for details.
DOI: 10.15468/dl.dds7t8
title: Occurrence Download

description: A dataset containing 3902 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chiroxiphia boliviana Allen, 1889"
 ]
}

 The dataset includes 3902 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003189-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.azxaci
title: Occurrence Download

description: A dataset containing 35287 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Diveboard - Scuba diving citizen science observations"
 ]
}

 The dataset includes 35287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038526-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g27xuy
title: Occurrence Download

description: A dataset containing 278061 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Reynoutria japonica Houtt.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is False",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is less than 180",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180"
 ]
}

 The dataset includes 278061 records from 612 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074068-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.