cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1103372.10fu
title: SH1103372.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1103373.10fu
title: SH1103373.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1103377.10fu
title: SH1103377.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.57761/d6yh-w514
title: CARE Scholar Training Materials

description: CARE Scholars-- Please click the 'Apply for Access' button in the upper right corner of this page, and complete the forms listed there.

AND please make sure to ask Dr. Rajeshuni to add you to the 'CARE Scholars-Hospitalization' study on this data portal! (This will take care of the 'Approval - IRB PHS 40974' form and the 'PI - Stanford RIF' form so that you don't have to do anything for those.)
description: You will be using a dataset called the [HCUP Nation Inpatient Database (NIS)](<https://redivis.com/datasets/2g37-7mghj1wyb>). Please refer to the resources on that Portal page for more information about the dataset and how to go about working with it.


description: #Resources  
- [PHS Documentation](<https://phsdocs.developerhub.io/>) about how to [Apply for (or Renew) Data Access](<https://phsdocs.developerhub.io/start-here/getting-data-access>), handle [Citations](<https://phsdocs.stanford.edu/need-help/citing-phs-data-core>), and other topics.
- [Redivis Documentation](<https://docs.redivis.com/>) about how the [PHS Data Portal](<https://redivis.com/StanfordPHS>) works, the [Project Tool](<https://docs.redivis.com/reference/projects>), and other topics.
- Ways to contact PHS staff include by email ([support@stanfordphs.freshdesk.com](<mailto:support@stanfordphs.freshdesk.com>))[ ](<mailto:support@stanfordphs.freshdesk.com>)our [Slack channels](<https://phs-data-users.slack.com/>) (which other PHS data users also use to share tips and offer advice) and [Office Hours.](<https://calendly.com/phsdatacore/>)

<!-- -->
DOI: 10.57761/rc6v-hf22
title: Mesoscale Gravity Wave Momentum Fluxes
DOI: 10.57761/y61f-w926
title: 3D Scene Graph Dataset

description: Iro Armeni (iarmeni@stanford.edu)
description: The 3D Scene Graph provides a variety of semantic data for models in the 
Gibson environment in the form of a scene graph. Semantic information is provided for buildings, rooms, and objects, and includes attributes (e.g., category, floors, dimensions, material, and texture) and relationships (e.g., spatial, parent-child, and comparative).
description: The 3D Scene Graph provides semantic data for models in the

[Gibson environment](<http://gibsonenv.stanford.edu/>) that corresponds to the structure proposed in [3D Scene Graph: A Structure for Unified Semantics, 3D Space, and Camera](<http://3dscenegraph.stanford.edu/>). The semantic information for models in the tiny Gibson split is verified via crowdsourcing and contains all 3D Scene Graph attributes. For these models we provide both the automated and verified outputs. For the rest of them, semantic information is the output of automated modules and does not include modalities that depend solely on manual input (e.g., object materials and textures). You can learn more about 3D Scene Graph and interact with the semantic data here: [http://3dscenegraph.stanford.edu](<http://3dscenegraph.stanford.edu/>)



![3dscenegraph.png](<https://redivis.com/fileUploads/efdce2bf-5300-4c21-8d71-1dc2511fba8d>)

![Albertville.png](<https://redivis.com/fileUploads/5e84eee8-f8c1-4816-af80-171ac1960f3a>)<u><strong>Important Information</strong></u>

- Dataset files and structure: [https://github.com/StanfordVL/3DSceneGraph](<https://github.com/StanfordVL/3DSceneGraph>)
- Everything you need to know about 3D Scene Graph: [https://3dscenegraph.stanford.edu/](<https://3dscenegraph.stanford.edu/>)
- Dataset creation: [https://ieeexplore.ieee.org/document/9008302](<https://ieeexplore.ieee.org/document/9008302>)

<!-- -->
DOI: 10.15468/dl.awe4qz
title: Occurrence Download

description: A dataset containing 634 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus davidiana var. japonica (Rehder) Nakai",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 634 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005969-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15151646
title: RFID Detection Logs and Associated Metadata from a Behavioral Study of Naked Mole-Rat Colonies

description: This dataset contains RFID-based detection events and associated metadata used for analyzing individual behaviors in a social animal study.

The data are organized as follows:

- `event_data/`    Time-stamped RFID detection logs collected over 30 days from 5 colonies. Each file corresponds to one day per colony, representing individual presence at RFID antennas.

- `pre_info_data/`    Supporting information including:  - Preliminary observation data  - Collection date information  - Individual ID and trait metadata

These data are associated with the manuscript currently under review at *Science Advances*.

The corresponding analysis code is available at:  https://github.com/MaYamakawa/naked-mole-rat-behavioral-analysis
DOI: 10.5281/zenodo.15178914
title: RFID Detection Logs and Associated Metadata from a Behavioral Study of Naked Mole-Rat Colonies (v2)

description: This is version 2 of the dataset used for the analysis of naked mole-rat behavior.

**Update in this version:**- Added UMAP layout data used for dimensionality reduction in behavioral analysis.- The new file is located in the `processed_data/` folder.

All other data from version 1 remain unchanged.

For analysis code, see:- https://doi.org/10.5281/zenodo.15151442- https://github.com/MaYamakawa/naked-mole-rat-behavioral-analysis
DOI: 10.5281/zenodo.15181514
title: RFID Detection Logs and Associated Metadata from a Behavioral Study of Naked Mole-Rat Colonies (v2)

description: This dataset contains RFID-based detection events and associated metadata used for behavioral analysis of naked mole-rats.

The data are organized as follows:

- `event_data/`    Time-stamped RFID detection logs collected over 30 days from 5 colonies. Each file corresponds to one day per colony, representing individual presence at RFID antennas.

- `pre_info_data/`    Supporting information including:  - Preliminary observation data  - Collection date information  - Individual ID and trait metadata

- `processed_data/`  Supporting information including:  - UMAP layout data for transparency

The corresponding analysis code is available at:  - https://doi.org/10.5281/zenodo.15151442- https://github.com/MaYamakawa/naked-mole-rat-behavioral-analysis
DOI: 10.15468/dl.4gtowy
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de Poales del Museo Botánico CORD - IMBIV",
 "TaxonKey is Dactylis glomerata L."
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032014-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7h6dwh
title: Occurrence Download

description: A dataset containing 5734 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amaranthus L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 5734 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159083-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eb2tpk
title: Occurrence Download

description: A dataset containing 170 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana lineolata Franch."
 ]
}

 The dataset includes 170 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006174-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.stdhwy
title: Occurrence Download

description: A dataset containing 227249 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UF FLMNH Ichthyology"
 ]
}

 The dataset includes 227249 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032015-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ft35qq
title: Occurrence Download

description: A dataset containing 801 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Blitum L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 801 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159092-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dc9zga
title: Occurrence Download

description: A dataset containing 2304 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Incilius alvarius (Girard, 1859)"
 ]
}

 The dataset includes 2304 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032016-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g4prdk
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Litsea glutinosa (Lour.) C.B.Rob."
 ]
}

 The dataset includes 160 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006256-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3u2cu3
title: Occurrence Download

description: A dataset containing 341 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hymenocallis Salisb.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 341 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159099-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cthifi
title: Occurrence Download

description: A dataset containing 2389866 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.72339 43.57178,-7.57233 39.9408,-0.86792 39.88037,-0.73608 43.43994,-7.72339 43.57178))",
 "HasCoordinate is true",
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2389866 records from 220 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032017-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q296u8
title: Occurrence Download

description: A dataset containing 6535 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lophornis ornatus (Boddaert, 1783)"
 ]
}

 The dataset includes 6535 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006225-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qhbr57
title: Occurrence Download

description: A dataset containing 234 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vipera kaznakovi Nikolsky, 1909"
 ]
}

 The dataset includes 234 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006234-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhmkqz
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce odieri subsp. odieri"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032018-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggss2w
title: Occurrence Download

description: A dataset containing 219 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus asperiuscula Kunth & C.D.Bouché"
 ]
}

 The dataset includes 219 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006298-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jcahr1
title: Occurrence Download

description: A dataset containing 102944 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Ichthyology Collection - Royal Ontario Museum"
 ]
}

 The dataset includes 102944 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032019-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j332w8
title: Occurrence Download

description: A dataset containing 2330 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rhodopechys sanguineus (Gould, 1838)"
 ]
}

 The dataset includes 2330 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006235-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9yvjr
title: Occurrence Download

description: A dataset containing 44795 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aulacorhynchus prasinus (Gould, 1833)"
 ]
}

 The dataset includes 44795 records from 142 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032019-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wjgd32
title: Occurrence Download

description: A dataset containing 220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year is greater than or equal to 1970",
 "TaxonKey is Trioza erytreae (Del Guercio, 1918)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 220 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0204855-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cupuu
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosyce taltalensis subsp. pilispina (F.Ritter) Katt."
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032021-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ebjhg
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Erythrura kleinschmidti (Finsch, 1878)"
 ]
}

 The dataset includes 63 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006312-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vjjm8q
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Apium L.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 39 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159105-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvb0bq
title: Occurrence Download

description: A dataset containing 2502 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Peru",
 "Country is Chile"
 ]
 },
 "Year 1950-2019",
 "HasCoordinate is true",
 "TaxonKey is Phyllotis Waterhouse, 1837",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2502 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032032-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2qss2
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerrardanthus paniculatus (Mast.) Cogn."
 ]
}

 The dataset includes 64 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012073-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6wvywg
title: Occurrence Download

description: A dataset containing 1355 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Casearia barteri Mast."
 ]
}

 The dataset includes 1355 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0215974-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yqddyp
title: Occurrence Download

description: A dataset containing 39418 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "Country is Mexico"
 ]
}

 The dataset includes 39418 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032024-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btwjnf
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gerrardanthus lobatus (Cogn.) C.Jeffrey"
 ]
}

 The dataset includes 73 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012061-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cbgu5k
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynosciadium DC.",
 "BasisOfRecord is one of (Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Continent is North America"
 ]
}

 The dataset includes 60 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159112-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.