cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5719930.v1
title: Estimating population parameters of longsnout seahorses, Hippocampus reidi (Teleostei: Syngnathidae) through mark-recapture

description: ABSTRACT Estimating population parameters is essential for understanding the ecology of species, which ultimately helps to assess their conservation status. The seahorse Hippocampus reidi is directly exposed to anthropogenic threats along the Brazilian coast, but the species still figures as Data Deficient (DD) at IUCN’s Red List. To provide better information on the ecology of this species, we studied how population parameters vary over time in a natural subtropical environment. By combing mark-recapture models for open and closed populations, we estimated abundance, survival rate, emigration probability, and capture probability. We marked 111 individuals, which showed a 1:1 sex ratio, and an average size of 10.5 cm. The population showed high survival rate, low temporary emigration probability and variable capture probability and abundance. Our models considering relevant biological criteria illuminate the relatively poorly known population ecology and life history of seahorses. It is our hope that this study inspires the use of mark-recapture methods in other populations of H. reidi in a collective effort to properly assess their conservation status.
DOI: 10.6084/m9.figshare.5719987
title: Association of Inflammation and Endothelial Dysfunction with Coronary Microvascular Resistance in Patients with Cardiac Syndrome X

description: Abstract Background: Although a proportion of CSX patients have impaired brachial artery flow-mediated dilatation (FMD) in response to hyperemia, suggesting that endothelial dysfunction in these patients may be systemic and not just confined to the coronary circulation; the underlying mechanisms triggering endothelial dysfunction in these patients are still incompletely understood. Objectives: To assess the association of the index of Microcirculatory Resistance (IMR) with endothelial dysfunction and inflammation in patients with CSX. Methods: We studied 20 CSX patients and 20 age and gender-matched control subjects. Thermodilution-derived coronary flow reserve (CFR) and IMR were measured using a pressure-temperature sensor-tipped guidewire. Brachial artery FMD was measured using high-resolution, two-dimensional ultrasound images obtained with a Doppler ultrasound device (HDI-ATL 5000, USA) with a 5 MHz to 12 MHz linear-array transducer. Results: Compared with in control subjects, CFR was significantly lower (2.42 ± 0.78 vs. 3.59 ± 0.79, p &lt; 0.001); IMR was higher (32.2 ± 8.0 vs. 19.5 ± 5.5, p &lt; 0.001); the concentration of hs-CRP and FMD was higher (4.75 ± 1.62 vs. 2.75 ± 1.50; 5.24 ± 2.41 vs. 8.57 ± 2.46, p &lt; 0.001) in CSX patients. The Duke treadmill score (DTS) was correlated positively to CFR and FMD (0.489 and 0.661, p &lt; 0.001), it was negative to IMR and hsCRP (-0.761 and -0.087, p &lt; 0.001) in CSX patients. Conclusions: The main finding in this study is that the DTS measured in patients with CSX was associated to hsCRP and FMD. Moreover, the independent effects of exercise tolerance can significantly impair FMD and hsCRP in CSX patients; especially it is particularly important to whom where FMD was associated negatively with IMR.
DOI: 10.6084/m9.figshare.5719987.v1
title: Association of Inflammation and Endothelial Dysfunction with Coronary Microvascular Resistance in Patients with Cardiac Syndrome X

description: Abstract Background: Although a proportion of CSX patients have impaired brachial artery flow-mediated dilatation (FMD) in response to hyperemia, suggesting that endothelial dysfunction in these patients may be systemic and not just confined to the coronary circulation; the underlying mechanisms triggering endothelial dysfunction in these patients are still incompletely understood. Objectives: To assess the association of the index of Microcirculatory Resistance (IMR) with endothelial dysfunction and inflammation in patients with CSX. Methods: We studied 20 CSX patients and 20 age and gender-matched control subjects. Thermodilution-derived coronary flow reserve (CFR) and IMR were measured using a pressure-temperature sensor-tipped guidewire. Brachial artery FMD was measured using high-resolution, two-dimensional ultrasound images obtained with a Doppler ultrasound device (HDI-ATL 5000, USA) with a 5 MHz to 12 MHz linear-array transducer. Results: Compared with in control subjects, CFR was significantly lower (2.42 ± 0.78 vs. 3.59 ± 0.79, p &lt; 0.001); IMR was higher (32.2 ± 8.0 vs. 19.5 ± 5.5, p &lt; 0.001); the concentration of hs-CRP and FMD was higher (4.75 ± 1.62 vs. 2.75 ± 1.50; 5.24 ± 2.41 vs. 8.57 ± 2.46, p &lt; 0.001) in CSX patients. The Duke treadmill score (DTS) was correlated positively to CFR and FMD (0.489 and 0.661, p &lt; 0.001), it was negative to IMR and hsCRP (-0.761 and -0.087, p &lt; 0.001) in CSX patients. Conclusions: The main finding in this study is that the DTS measured in patients with CSX was associated to hsCRP and FMD. Moreover, the independent effects of exercise tolerance can significantly impair FMD and hsCRP in CSX patients; especially it is particularly important to whom where FMD was associated negatively with IMR.
DOI: 10.6084/m9.figshare.5719990
title: Fiber composition of a diversity panel of the world collection of sugarcane (Saccharum spp.) and related grasses

description: ABSTRACT The world collection of sugarcane (Saccharum hybrids. and related grasses (WCSRG) is an important source of genes for sugarcane and energycane breeding. The core collection or diversity panel of the WCSRG was created in Canal Point with 300 accession and 10 checks to evaluate its diversity. The fiber components of the species and accessions within the WCSRG are unknown, so a shredded and dried fiber sample was taken from each accession and sent for fiber analysis. The acetyl groups, acid insoluble lignin, acid soluble lignin, arabinan, glucan, holocellulose, total lignin, structural ash, and xylan were quantified on a % fiber basis and nonstructural ash on a % total basis. There were significant, but not large differences between species for holocellulose, lignin, acetyl, acid soluble lignin, nonstructural ash, and glucan. For each trait, Saccharum spontaneum had significantly more holocellulose, glucan, lignin, and nonstructural ash and less acetyl and acid soluble lignin than other species. In all populations, glucan and holocellulose were positively correlated and glucan and lignin were negatively correlated. In hybrids, internode length correlated positively with holocellulose and nonstructural ash and negatively with lignin. Principal component analysis indicated that a large amount of diversity exists within each of the species. The results suggest that strategic use of the WCSRG could provide both positive and negative selection for fiber-related traits could be made within all species of the collection.
DOI: 10.6084/m9.figshare.5719990.v1
title: Fiber composition of a diversity panel of the world collection of sugarcane (Saccharum spp.) and related grasses

description: ABSTRACT The world collection of sugarcane (Saccharum hybrids. and related grasses (WCSRG) is an important source of genes for sugarcane and energycane breeding. The core collection or diversity panel of the WCSRG was created in Canal Point with 300 accession and 10 checks to evaluate its diversity. The fiber components of the species and accessions within the WCSRG are unknown, so a shredded and dried fiber sample was taken from each accession and sent for fiber analysis. The acetyl groups, acid insoluble lignin, acid soluble lignin, arabinan, glucan, holocellulose, total lignin, structural ash, and xylan were quantified on a % fiber basis and nonstructural ash on a % total basis. There were significant, but not large differences between species for holocellulose, lignin, acetyl, acid soluble lignin, nonstructural ash, and glucan. For each trait, Saccharum spontaneum had significantly more holocellulose, glucan, lignin, and nonstructural ash and less acetyl and acid soluble lignin than other species. In all populations, glucan and holocellulose were positively correlated and glucan and lignin were negatively correlated. In hybrids, internode length correlated positively with holocellulose and nonstructural ash and negatively with lignin. Principal component analysis indicated that a large amount of diversity exists within each of the species. The results suggest that strategic use of the WCSRG could provide both positive and negative selection for fiber-related traits could be made within all species of the collection.
DOI: 10.6084/m9.figshare.5720950
title: Validation of Four Prediction Scores for Cardiac Surgery-Associated Acute Kidney Injury in Chinese Patients

description: Abstract Objective: To assess the clinical value of four models for the prediction of cardiac surgery-associated acute kidney injury (CSA-AKI) and severe AKI which renal replacement therapy was needed (RRT-AKI) in Chinese patients. Methods: 1587 patients who underwent cardiac surgery in the department of cardiac surgery in the Zhongshan Hospital, Fudan University, between January 2013 and December 2013 were enrolled in this research. Evaluating the predicting value for cardiac surgery-associated AKI (AKICS score) and RRT-AKI (Cleveland score, SRI and Mehta score) by Hosmer-Lemeshow goodness-of-fit test for the calibration and area under receiver operating characteristic curve (AUROC) for the discrimination. Results: Based on 2012 KDIGO (Kidney Disease: Improving Global Outcomes) AKI definition, the incidence of AKI and RRT-AKI was 37.4% (594/1587) and 1.1% (18/1587), respectively. The mortality of AKI and RRT-AKI was 6.1% (36/594) and 66.7% (12/18), respectively, while the total mortality was 2.8% (44/1587). The discrimination (AUROC=0.610) for the prediction of CSA-AKI of AKICS was low, while the calibration (x2=7.55, P=0.109) was fair. For the prediction of RRT-AKI, the discrimination of Cleveland score (AUROC=0.684), Mehta score (AUROC=0.708) and SRI (AUROC=0.622) were not good; while the calibration of them were fair (Cleveland score x2=1.918, P=0.166; Mehta score x2=9.209, P=0.238; SRI x2=2.976, P=0.271). Conclusion: In our single-center study, based upon valve surgery dominant and less diabetes mellitus patients, according to KDIGO AKI definition, the predictive value of the four models, combining discrimination and calibration, for respective primary event, were not convincible.
DOI: 10.6084/m9.figshare.5720950.v1
title: Validation of Four Prediction Scores for Cardiac Surgery-Associated Acute Kidney Injury in Chinese Patients

description: Abstract Objective: To assess the clinical value of four models for the prediction of cardiac surgery-associated acute kidney injury (CSA-AKI) and severe AKI which renal replacement therapy was needed (RRT-AKI) in Chinese patients. Methods: 1587 patients who underwent cardiac surgery in the department of cardiac surgery in the Zhongshan Hospital, Fudan University, between January 2013 and December 2013 were enrolled in this research. Evaluating the predicting value for cardiac surgery-associated AKI (AKICS score) and RRT-AKI (Cleveland score, SRI and Mehta score) by Hosmer-Lemeshow goodness-of-fit test for the calibration and area under receiver operating characteristic curve (AUROC) for the discrimination. Results: Based on 2012 KDIGO (Kidney Disease: Improving Global Outcomes) AKI definition, the incidence of AKI and RRT-AKI was 37.4% (594/1587) and 1.1% (18/1587), respectively. The mortality of AKI and RRT-AKI was 6.1% (36/594) and 66.7% (12/18), respectively, while the total mortality was 2.8% (44/1587). The discrimination (AUROC=0.610) for the prediction of CSA-AKI of AKICS was low, while the calibration (x2=7.55, P=0.109) was fair. For the prediction of RRT-AKI, the discrimination of Cleveland score (AUROC=0.684), Mehta score (AUROC=0.708) and SRI (AUROC=0.622) were not good; while the calibration of them were fair (Cleveland score x2=1.918, P=0.166; Mehta score x2=9.209, P=0.238; SRI x2=2.976, P=0.271). Conclusion: In our single-center study, based upon valve surgery dominant and less diabetes mellitus patients, according to KDIGO AKI definition, the predictive value of the four models, combining discrimination and calibration, for respective primary event, were not convincible.
DOI: 10.6084/m9.figshare.25469227
title: Factors influencing the use of LMS in HEIs in Ghana (Lecturers ).xlsx

description: This file contains data on the factors influencing learning management systems use and adoption among Lecturers in Ghanaian Higher Education Institutions.
DOI: 10.6084/m9.figshare.25469227.v1
title: Factors influencing the use of LMS in HEIs in Ghana (Lecturers ).xlsx

description: This file contains data on the factors influencing learning management systems use and adoption among Lecturers in Ghanaian Higher Education Institutions.
DOI: 10.6084/m9.figshare.5721394
title: MOESM10 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

description: Additional file 10. List of all the significant genes specific to ART-R subpopulations genetic background (265 genes). These genes have at least one significant SNP in KH2.1, KH2.2, KH3, KH4 and KH5 subpopulations. The 168 genes set are genes significant in ART-S subpopulation KH1.2 and all the ART-R subpopulations. The complementary set of 97 significant genes is specific to the ART-R subpopulations and are not in the ART-S subpopulation KH1.2 background. The 57 genes have at least one significant SNP in all the ART-R subpopulations, in the admixed subpopulation KHA and no significant SNP in ART-S subpopulation KH1.2. Annotation terms describing the function, the pathway or cell localization of the protein product were taken from genes current description in PlasmoDB and GO terms related to the genes or Pfam domains.
DOI: 10.6084/m9.figshare.5721394.v1
title: MOESM10 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

description: Additional file 10. List of all the significant genes specific to ART-R subpopulations genetic background (265 genes). These genes have at least one significant SNP in KH2.1, KH2.2, KH3, KH4 and KH5 subpopulations. The 168 genes set are genes significant in ART-S subpopulation KH1.2 and all the ART-R subpopulations. The complementary set of 97 significant genes is specific to the ART-R subpopulations and are not in the ART-S subpopulation KH1.2 background. The 57 genes have at least one significant SNP in all the ART-R subpopulations, in the admixed subpopulation KHA and no significant SNP in ART-S subpopulation KH1.2. Annotation terms describing the function, the pathway or cell localization of the protein product were taken from genes current description in PlasmoDB and GO terms related to the genes or Pfam domains.
DOI: 10.6084/m9.figshare.5721427
title: Additional file 3: Table S3. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Canonical gene set enrichment analysis (GSEA) of significantly differentially expressed transcripts in the female G. pallidipes 24 or 48Â h post-challenge with T. B. brucei. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.5721448
title: Additional file 4: Table S4. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Major (top ten) secreted/non-secreted differentially expressed genes in carcases of teneral G. pallidipes tsetse flies 24 or 48 h post-challenge by T. b. brucei parasites. * = treatment transcriptome; ** = reference trancriptome. (XLSX 351 kb)
DOI: 10.6084/m9.figshare.5721460
title: Additional file 5: Table S5. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Putative immune responsive genes in G. pallidipes guts challenged with T. b. brucei. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.5721460.v1
title: Additional file 5: Table S5. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Putative immune responsive genes in G. pallidipes guts challenged with T. b. brucei. (XLSX 43Â kb)
DOI: 10.6084/m9.figshare.5721481
title: Additional file 6: Table S6. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Predominantly (90 percentile) differentially expressed genes in guts and carcasses of teneral G. pallidipes tsetse flies challenged with T. b. brucei parasites 24 or 48 h. * = treatment transcriptome; ** = reference transcriptome. (XLSX 25 kb)
DOI: 10.6084/m9.figshare.5721499
title: Additional file 7: Table S7. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Orthology groups expanded in G. pallidipes in relation to G. m. morsitans and their associated Blast annotations and gene ontology (GO) terms. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5721499.v1
title: Additional file 7: Table S7. of Tsetse fly (Glossina pallidipes) midgut responses to Trypanosoma brucei challenge

description: Orthology groups expanded in G. pallidipes in relation to G. m. morsitans and their associated Blast annotations and gene ontology (GO) terms. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.5721580
title: MOESM1 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

description: Additional file 1. List of all the isolates used for the analysis. This list provides the index of the sample, ENA accession number, locality, year of data collection, Sample ID, Study ID and the name of the file to be downloaded from the ENA database server. This list is sorted in alphabetic order of localities in Cambodia. This publication uses data and the metainformation from the MalariaGEN Plasmodium falciparum Community Project as described in Genomic epidemiology of artemisinin resistant malaria.
DOI: 10.6084/m9.figshare.5721580.v1
title: MOESM1 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

description: Additional file 1. List of all the isolates used for the analysis. This list provides the index of the sample, ENA accession number, locality, year of data collection, Sample ID, Study ID and the name of the file to be downloaded from the ENA database server. This list is sorted in alphabetic order of localities in Cambodia. This publication uses data and the metainformation from the MalariaGEN Plasmodium falciparum Community Project as described in Genomic epidemiology of artemisinin resistant malaria.
DOI: 10.6084/m9.figshare.5721709
title: MOESM7 of Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia

description: Additional file 7. Database presenting the list of 21,257 non-synonymous SNPs found in the 167 Cambodian isolates. Calling of SNPs is described in theÂ â Methodsâ section. See full legend in the corresponding excel sheet.
DOI: 10.6084/m9.figshare.5721814
title: Additional file 10: Table S2 of Fine regulation of ARF17 for anther development and pollen formation

description: List of primers used in qRT-PCR. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.5721814.v1
title: Additional file 10: Table S2 of Fine regulation of ARF17 for anther development and pollen formation

description: List of primers used in qRT-PCR. (XLS 22Â kb)
DOI: 10.6084/m9.figshare.5721886
title: Additional file 5: Table S3. of Fine regulation of ARF17 for anther development and pollen formation

description: List of up-regulated genes in 5mARF17/WT that are typically expressed or absent in WT buds. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.5721886.v1
title: Additional file 5: Table S3. of Fine regulation of ARF17 for anther development and pollen formation

description: List of up-regulated genes in 5mARF17/WT that are typically expressed or absent in WT buds. (XLSX 65Â kb)
DOI: 10.6084/m9.figshare.5721901
title: Additional file 6: Table S4. of Fine regulation of ARF17 for anther development and pollen formation

description: Protein classification of up-regulated genes by PANTHER. (XLS 116Â kb)
DOI: 10.6084/m9.figshare.5721901.v1
title: Additional file 6: Table S4. of Fine regulation of ARF17 for anther development and pollen formation

description: Protein classification of up-regulated genes by PANTHER. (XLS 116Â kb)
DOI: 10.6084/m9.figshare.5721946
title: Additional file 9: Table S1. of Fine regulation of ARF17 for anther development and pollen formation

description: List of primers used in clones and identification. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.5721946.v1
title: Additional file 9: Table S1. of Fine regulation of ARF17 for anther development and pollen formation

description: List of primers used in clones and identification. (XLS 21Â kb)
DOI: 10.6084/m9.figshare.5721970
title: Additional file 1: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Raphanus sativus flowering genes. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.5721970.v1
title: Additional file 1: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Raphanus sativus flowering genes. (XLS 46Â kb)
DOI: 10.6084/m9.figshare.5721988
title: Additional file 2: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Raphanus sativus flowering genes lost during evolution as well as functionally redundant genes. ‘--’ indicates a lack of functionally redundant genes. (XLS 26 kb)
DOI: 10.6084/m9.figshare.5721988.v1
title: Additional file 2: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Raphanus sativus flowering genes lost during evolution as well as functionally redundant genes. ‘--’ indicates a lack of functionally redundant genes. (XLS 26 kb)
DOI: 10.6084/m9.figshare.5722006
title: Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Flowering genes identified in Raphanus sativus, Brassica oleracea, and Brassica rapa. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.5722006.v1
title: Additional file 3: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: Flowering genes identified in Raphanus sativus, Brassica oleracea, and Brassica rapa. (XLS 64Â kb)
DOI: 10.6084/m9.figshare.5722024
title: Additional file 4: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: The Ka/Ks value of flowering-related genes of Raphanus sativus and Arabidopsis thaliana in different flowering gene sets. (XLS 54Â kb)
DOI: 10.6084/m9.figshare.5722024.v1
title: Additional file 4: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: The Ka/Ks value of flowering-related genes of Raphanus sativus and Arabidopsis thaliana in different flowering gene sets. (XLS 54Â kb)
DOI: 10.6084/m9.figshare.5722042
title: Additional file 5: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: The FPKM (fragments per kilobase of exon per million mapped reads) value of the flowering genes in Raphanus sativus flowers, siliques, leaves, stems, callus, and roots. (XLS 70Â kb)
DOI: 10.6084/m9.figshare.5722042.v1
title: Additional file 5: of Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.)

description: The FPKM (fragments per kilobase of exon per million mapped reads) value of the flowering genes in Raphanus sativus flowers, siliques, leaves, stems, callus, and roots. (XLS 70Â kb)