cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14071280.v1
title: Broadly distributed but genetically fragmented: Demographic consequences of Pleistocene climatic oscillations in a common Iberian grasshopper

description: <b>Samples.xlsx</b>: Description of individual and population codes used in the different analyses and genomic datasets. <b><br></b><b>EnvironmentalData.xlsx</b>: Environmental data and genetic diversity statistics for each studied population. <b><br></b><b>p14r05m5minMAF001.str</b>: Input file used to perform genetic clustering (STRUCTURE and DAPC) and principal component analyses (PCA). <b><br></b><b>FASTSIMCOAL2.zip</b>: This ZIP folder contains input files for demographic analyses in FASTSIMCOAL2. Analyses were run fixing the effective population size of each deme (NW, CS and NE populations). <b><br></b><b>LayersENM.zip</b>: This ZIP folder contains raster maps (TIF format) derived from environmental niche models (ENM). Raster maps were obtained by projecting the ENM from MAXENT to current bioclimatic conditions (CURRENT), last glacial maximum (LGM, 21 ka) bioclimatic conditions derived from the MIROC-ESM general atmospheric circulation model (MIROC), and LGM bioclimatic conditions derived from the CCSM4 general atmospheric circulation model (CCSM). <b><br></b><b>STAIRWAYPLOT.zip</b>: This ZIP folder contains input files for demographic reconstructions in STAIRWAY PLOT for each studied population.<br> <b>MMRR.zip</b>: This ZIP folder contains genetic differentiation (FST) and distance matrices (geographic, environmental, topographic, and resistance distances) used in Multiple Matrix Regression with Randomization (MMRR) analyses.
DOI: 10.6084/m9.figshare.14071280
title: Broadly distributed but genetically fragmented: Demographic consequences of Pleistocene climatic oscillations in a common Iberian grasshopper

description: <b>Samples.xlsx</b>: Description of individual and population codes used in the different analyses and genomic datasets. <b><br></b><b>EnvironmentalData.xlsx</b>: Environmental data and genetic diversity statistics for each studied population. <b><br></b><b>p14r05m5minMAF001.str</b>: Input file used to perform genetic clustering (STRUCTURE and DAPC) and principal component analyses (PCA). <b><br></b><b>FASTSIMCOAL2.zip</b>: This ZIP folder contains input files for demographic analyses in FASTSIMCOAL2. Analyses were run fixing the effective population size of each deme (NW, CS and NE populations). <b><br></b><b>LayersENM.zip</b>: This ZIP folder contains raster maps (TIF format) derived from environmental niche models (ENM). Raster maps were obtained by projecting the ENM from MAXENT to current bioclimatic conditions (CURRENT), last glacial maximum (LGM, 21 ka) bioclimatic conditions derived from the MIROC-ESM general atmospheric circulation model (MIROC), and LGM bioclimatic conditions derived from the CCSM4 general atmospheric circulation model (CCSM). <b><br></b><b>STAIRWAYPLOT.zip</b>: This ZIP folder contains input files for demographic reconstructions in STAIRWAY PLOT for each studied population.<br> <b>MMRR.zip</b>: This ZIP folder contains genetic differentiation (FST) and distance matrices (geographic, environmental, topographic, and resistance distances) used in Multiple Matrix Regression with Randomization (MMRR) analyses.<br><b>Occurrence.csv</b>: Occurrence data used for environmental niche modelling (ENM).
DOI: 10.18434/m32041
title: Data from Influence of Fire on the Lateral Resistance of Cold-Formed Steel Shear Walls - Phase 2

description: Twenty-two 2.7 m by 3.7 m shear wall specimens
      consisting of 150 mm wide CFS framing were tested. All walls were designed to achieve a 1-hour
      fire-resistance rating per American Society for Testing and Materials (ASTM) standard E119.
      Heating was applied to the side of the wall opposite to the side where the shear-resisting
      elements are located; it is assumed that the shear-resisting elements line an egress corridor
      and the fire occurs in a room adjacent to the corridor. The walls are designed using Allowable
      Stress Design nominally following American Iron and Steel Institute (AISI) standards
      S400-15/S1-16 and AISI S100-16.
DOI: 10.5281/zenodo.4617993
title: SUPERVISED VIDEO SUMMARIZATION

description: TvSum and SumMe dataset with extracted features from early work and newly extracted feature using I3D (Kinetic motion features).
DOI: 10.6084/m9.figshare.14240970
title: Nestin and CD34 expression in colorectal cancer predicts improved overall survival

description: Nestin, a class VI intermediate filament protein of the cytoskeleton, and CD34, a transmembrane phosphoglycoprotein, are markers of progenitor cells. This study aimed to evaluate their expression and clinical significance in colorectal cancer. A clinically annotated tissue microarray, including 599 patients with colorectal cancer, was analyzed by immunohistochemistry. Furthermore, nestin and CD34 correlations with HIF-1a and a panel of cytokines and chemokines were assessed using quantitative reverse transcription PCR and The Cancer Genome Atlas dataset. Expression of nestin and CD34 was observed only in the tumor stroma. Patients displaying high expression of nestin and CD34 demonstrated higher rates of T1 and T2 tumors (<i>p</i> = .020), lower vascular invasion (<i>p</i> r = 0.37–0.78, <i>p</i> Combined expression of nestin and CD34 expression is associated with better overall survival possibly by modulating a favorable immune response.
DOI: 10.6084/m9.figshare.14240970.v1
title: Nestin and CD34 expression in colorectal cancer predicts improved overall survival

description: Nestin, a class VI intermediate filament protein of the cytoskeleton, and CD34, a transmembrane phosphoglycoprotein, are markers of progenitor cells. This study aimed to evaluate their expression and clinical significance in colorectal cancer. A clinically annotated tissue microarray, including 599 patients with colorectal cancer, was analyzed by immunohistochemistry. Furthermore, nestin and CD34 correlations with HIF-1a and a panel of cytokines and chemokines were assessed using quantitative reverse transcription PCR and The Cancer Genome Atlas dataset. Expression of nestin and CD34 was observed only in the tumor stroma. Patients displaying high expression of nestin and CD34 demonstrated higher rates of T1 and T2 tumors (<i>p</i> = .020), lower vascular invasion (<i>p</i> r = 0.37–0.78, <i>p</i> Combined expression of nestin and CD34 expression is associated with better overall survival possibly by modulating a favorable immune response.
DOI: 10.5281/zenodo.4618010
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 23

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618009
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 23

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.3886/e115982
title: Data and Code for: Oil, Equities, and the Zero Lower Bound

description: From late 2008 to 2014, oil and equity returns were more positively correlated than in other periods. In addition, we show that both oil and equity returns became more responsive to macroeconomic news. We provide empirical evidence that these changes resulted from the zero lower bound (ZLB) on nominal interest rates, consistent with the theoretical predictions of a model that includes the ZLB. Although the ZLB alters the economic environment in theory, supportive empirical evidence has been lacking. Our paper provides clear evidence of the ZLB altering the economic environment.
DOI: 10.3886/e115982v1
title: Data and Code for: Oil, Equities, and the Zero Lower Bound

description: From late 2008 to 2014, oil and equity returns were more positively correlated than in other periods. In addition, we show that both oil and equity returns became more responsive to macroeconomic news. We provide empirical evidence that these changes resulted from the zero lower bound (ZLB) on nominal interest rates, consistent with the theoretical predictions of a model that includes the ZLB. Although the ZLB alters the economic environment in theory, supportive empirical evidence has been lacking. Our paper provides clear evidence of the ZLB altering the economic environment.
DOI: 10.3886/e116461
title: Data and Code for: How Do Mortgage Refinances Affect Debt, Default, and Spending? Evidence from HARP

description: We use quasi-random access to the Home Affordable Refinance Program (HARP) to identify the causal effect of refinancing into a lower-rate mortgage on borrower balance sheet outcomes. Refinancing substantially reduces borrower default rates on mortgages and other debt. Refinancing also causes borrowers to expand their use of debt instruments, such as auto loans, home equity lines, and other consumer debts that are proxies for spending. Borrowers that appear more constrained ex-ante grow these debts more strongly after refinancing but also pay down credit card balances by more. These borrowers also have lower take-up of the refinancing opportunity.
DOI: 10.3886/e116461v1
title: Data and Code for: How Do Mortgage Refinances Affect Debt, Default, and Spending? Evidence from HARP

description: We use quasi-random access to the Home Affordable Refinance Program (HARP) to identify the causal effect of refinancing into a lower-rate mortgage on borrower balance sheet outcomes. Refinancing substantially reduces borrower default rates on mortgages and other debt. Refinancing also causes borrowers to expand their use of debt instruments, such as auto loans, home equity lines, and other consumer debts that are proxies for spending. Borrowers that appear more constrained ex-ante grow these debts more strongly after refinancing but also pay down credit card balances by more. These borrowers also have lower take-up of the refinancing opportunity.
DOI: 10.5281/zenodo.4618576
title: Dr. (researcher)

description: Dataset on the mosquito larvae mortality produced by entomopathogenic nematodes from Yucatán, Mexico. Data set on soil characteristics of the samling sites where entomopathogenic nematodes were found.
description: Funding: National Council of Science and Technology of Mexico – Mexican Ministry of Energy – Hydrocarbon Trust, Project 201441
DOI: 10.5281/zenodo.4470024
title: Dr. (researcher)

description: Dataset on the mosquito larvae mortality produced by entomopathogenic nematodes from Yucatán, Mexico. Data set on soil characteristics of the samling sites where entomopathogenic nematodes were found.
description: Funding: National Council of Science and Technology of Mexico – Mexican Ministry of Energy – Hydrocarbon Trust, Project 201441
DOI: 10.3886/e117302
title: Data and Code for: "The Choice Channel of Financial Innovation"

description: This data archive contains the data and programs necessary to replicate the empirical and numerical analyses in the paper, "The Choice Channel of Financial Innovation." <br>This paper is motivated by financial innovation in recent decades has expanded portfolio choice. We investigate how greater choice affects investors' savings and asset returns. We establish a choice channel by which greater portfolio choice increases investors' savings---by enabling them to earn the aggregate risk premium or to take speculative positions. In equilibrium, portfolio customization (access to risky assets beyond the market portfolio) reduces the risk-free rate. Participation (access to the market portfolio) reduces the risk premium but typically increases the risk-free rate. Empirically, we find that stock market participants in the U.S. save more than nonparticipants, and have increasingly dispersed portfolio returns, consistent with the choice channel.
DOI: 10.3886/e117302v1
title: Data and Code for: "The Choice Channel of Financial Innovation"

description: This data archive contains the data and programs necessary to replicate the empirical and numerical analyses in the paper, "The Choice Channel of Financial Innovation." <br>This paper is motivated by financial innovation in recent decades has expanded portfolio choice. We investigate how greater choice affects investors' savings and asset returns. We establish a choice channel by which greater portfolio choice increases investors' savings---by enabling them to earn the aggregate risk premium or to take speculative positions. In equilibrium, portfolio customization (access to risky assets beyond the market portfolio) reduces the risk-free rate. Participation (access to the market portfolio) reduces the risk premium but typically increases the risk-free rate. Empirically, we find that stock market participants in the U.S. save more than nonparticipants, and have increasingly dispersed portfolio returns, consistent with the choice channel.
DOI: 10.5281/zenodo.4618495
title: hg19 syntenic ages

description: # Hg19 46-way vertebrate tree syntenic block age files. Information for hg19 46-way vertebrate multiple sequence alignment can be found here - http://hgdownload.cse.ucsc.edu/goldenPath/hg19/multiz46way/README.txt # Scripts generating these files (1) Creating syntenic block .bed files https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_spec_count_msa-hg19.py (2) Assigning most recent common ancestor (MRCA) and patristic distances to syntenic blocks https://github.com/slifong08/enh_ages/blob/54084ff12e521c20cc5288d6cb3590fac93c11ed/age_arch/manuscript_scripts/get_synteny_age_hg19.py <br> ### Bed file<br> # File columns ["chr", "start", "end", "strand", "reference_genome", "species_count", "length_synteny_block", "max_mrca", "max_patr"] # Definitions "max_mrca" = the phylogenetic distance from Homo sapiens to the most recent common ancestor of the oldest taxon. "max_patr" = the phylogenetic distance from Homo sapiens to the oldest taxon. "species_count" = the number of species' genomes the syntenic block maps to.
DOI: 10.5281/zenodo.4618008
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 22

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618007
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 22

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618006
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 21

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618005
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 21

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618004
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 20

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4616789
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 14

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (There are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4618003
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 20

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (there are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4616799
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 18

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (There are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4616788
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 14

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (There are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"
DOI: 10.5281/zenodo.4616798
title: Tomographic data acquired by a combination of a grid scan and half-acquisition scans: Part 18

description: Tomographic data acquired by a combination of a grid scan and half-acquisition scans (offset center-of-rotation in respect to the grid as a whole) was used to demonstrate data-processing methods in the paper: "Data processing methods and data acquisition for samples larger than the field of view in parallel-beam tomography" Nghia T. Vo, Robert C. Atwood, M. Drakopoulos, and Thomas Connolley, https://doi.org/10.1364/OE.418448 To extract data, you firstly collect all the files together (There are 47 files uploaded to 24 zenodo sections: *Part01, *Part02, ...*Part24) and run "zip -F grid_scan_splitted.zip --out data.zip" to recreate dataset. Then you can unzip by running "unzip data.zip"