cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2fq79q
title: CCDC 2255693: Experimental Crystal Structure Determination

description: Related Article: Nat Triamchaisri|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.6861341
title: Data from: Improved FIFRELIN de-excitation model for neutrino applications

description: New FIFRELIN cascades for the isotopes 156,158Gd are distributed to the community, to be used for various applications. The new cascades feature an improved modeling of de-excitation. The main improvements are: 1) Inclusion of primary transitions from EGAF database. 2) Treatment of gamma-directional correlations 3) Improved physics for the Internal Conversion process and X ray emission. With the use of the files provided, please cite the following publication: H. Almazán et al, <em>The European Physical Journal A</em> <strong>volume 59</strong>, Article number: 75 (2023) DOI: https://doi.org/10.1140/epja/s10050-023-00977-x
DOI: 10.5281/zenodo.6861340
title: Data from: Improved FIFRELIN de-excitation model for neutrino applications

description: New FIFRELIN cascades for the isotopes 156,158Gd are distributed to the community, to be used for various applications. The new cascades feature an improved modeling of de-excitation. The main improvements are: 1) Inclusion of primary transitions from EGAF database. 2) Treatment of gamma-directional correlations 3) Improved physics for the Internal Conversion process and X ray emission. With the use of the files provided, please cite the following publication: H. Almazán et al, <em>The European Physical Journal A</em> <strong>volume 59</strong>, Article number: 75 (2023) DOI: https://doi.org/10.1140/epja/s10050-023-00977-x
DOI: 10.6084/m9.figshare.22434547.v7
title: Different patterns of foreground and background processing contribute to texture segregation in humans: an electrophysiological study

description: The original data and examples of stimulus presentation for this study <br>
DOI: 10.6084/m9.figshare.22434547.v8
title: Different patterns of foreground and background processing contribute to texture segregation in humans: an electrophysiological study_old

description: The original data and examples of stimulus presentation for this study <br>
DOI: 10.34740/kaggle/dsv/5414548
title: Arabic hip-hop lyrics
DOI: 10.6084/m9.figshare.20488260
title: Intestine samples h5ad

description: Rawcounts (<code>.raw</code>), logcounts (<code>.X</code>), cell types (<code>.obs</code>), and spatial coordinates (<code>.obsm['spatial']</code>) have been included in the corresponding anndata object
DOI: 10.6084/m9.figshare.20488260.v1
title: Intestine samples h5ad

description: Rawcounts (<code>.raw</code>), logcounts (<code>.X</code>), cell types (<code>.obs</code>), and spatial coordinates (<code>.obsm['spatial']</code>) have been included in the corresponding anndata object
DOI: 10.6084/m9.figshare.20460372
title: mel_adata

description: An AnnData file for Thrane melanoma input, which contains the following: log-transformed expression in adata.X, raw expression in adata.raw, cell types computed by RCTD in adata.obs, and spatial coordinates in adata.obsm
DOI: 10.6084/m9.figshare.20460372.v2
title: mel_adata

description: An AnnData file for Thrane melanoma input, which contains the following: log-transformed expression in adata.X, raw expression in adata.raw, cell types computed by RCTD in adata.obs, and spatial coordinates in adata.obsm
DOI: 10.6084/m9.figshare.20460372.v1
title: mel_adata

description: An AnnData file for Thrane melanoma input, which contains the following: log-transformed expression in adata.X, raw expression in adata.raw, cell types computed by RCTD in adata.obs, and spatial coordinates in adata.obsm
DOI: 10.6084/m9.figshare.21836217
title: SVZ seqfish+

description: An AnnData file for Eng's SVZ data, which contains the following: log-transformed expression in adata.X, raw expression in adata.raw, cell types computed by RCTD in adata.obs, and spatial coordinates in adata.obsm
DOI: 10.5281/zenodo.7831618
title: Systematic exploration of mitochondrial DNA- and RNA-protein complexes by complexome profiling (datasets)

description: Supplemental data files that include the results of complexome profiling experiments from the manuscript entitled "<strong>Let’s make it clear: Systematic exploration of mitochondrial DNA- and RNA-protein complexes by complexome profiling" by Potter et al</strong>. Supplemental Data 1: comparison of mitochondrial complexomes obtained with either Blue Native (BNE) or high resolution Clear Native (hrCNE) gel electrophoresis. Supplemental Data 2: comparison of mitochondrial complexomes obtained with hrCNE from samples supplemented or not with DNase I. Supplemental Data 3: comparison of mitochondrial complexomes obtained with hrCNE from samples supplemented with only DNase I or a combination of DNase I and RNase A. Supplemental Data 4: comparison of mitochondrial complexomes obtained with hrCNE from control cells, cells treated with ethidium bromide and cells recovering after ethidium bromide treatment. Supplemental Data 5: results of LFQ-based analysis of profiles obtained from samples supplemented or not with DNase I. Supplemental Data 6: individual profiles (replicates), alignment and mass calibration results for the presented data.
DOI: 10.5281/zenodo.7831617
title: Systematic exploration of mitochondrial DNA- and RNA-protein complexes by complexome profiling (datasets)

description: Supplemental data files that include the results of complexome profiling experiments from the manuscript entitled "<strong>Let’s make it clear: Systematic exploration of mitochondrial DNA- and RNA-protein complexes by complexome profiling" by Potter et al</strong>. Supplemental Data 1: comparison of mitochondrial complexomes obtained with either Blue Native (BNE) or high resolution Clear Native (hrCNE) gel electrophoresis. Supplemental Data 2: comparison of mitochondrial complexomes obtained with hrCNE from samples supplemented or not with DNase I. Supplemental Data 3: comparison of mitochondrial complexomes obtained with hrCNE from samples supplemented with only DNase I or a combination of DNase I and RNase A. Supplemental Data 4: comparison of mitochondrial complexomes obtained with hrCNE from control cells, cells treated with ethidium bromide and cells recovering after ethidium bromide treatment. Supplemental Data 5: results of LFQ-based analysis of profiles obtained from samples supplemented or not with DNase I. Supplemental Data 6: individual profiles (replicates), alignment and mass calibration results for the presented data.
DOI: 10.6084/m9.figshare.22638958
title: the complete mitochondrial genome of five Aythya species

description: 28 complete mitogenomes of five species: six <em>A. ferina</em>, four <em>A. nyroca</em>, six <em>A. baeri</em>, six <em>A. fuligula</em>, and six <em>A. marila</em>.
DOI: 10.6084/m9.figshare.22638958.v1
title: the complete mitochondrial genome of five Aythya species

description: 28 complete mitogenomes of five species: six <em>A. ferina</em>, four <em>A. nyroca</em>, six <em>A. baeri</em>, six <em>A. fuligula</em>, and six <em>A. marila</em>.
DOI: 10.6084/m9.figshare.22638907
title: Baroclinic effects on wave-driven flows in a microtidal bay

description: The input files for the wave-current coupled Bohai Sea model
DOI: 10.5517/ccdc.csd.cc2fqx9d
title: CCDC 2256344: Experimental Crystal Structure Determination

description: Related Article: JW LIU|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7804126
title: Codes for ''The lithospheric loading model for large impact basin where mantle plug presents''

description: This dataset contains the fortran codes and shell script used to generate data and figure for the article titled with "<strong>The lithospheric loading model for large impact basin where mantle plug presents</strong>". GMT and SHTOOLS is required for the operation of these code. The source code named LocalizedAdmitCorrV4.f95 is modified from the SHTOOLS example: LocalizedAdmitCorr.f95 written by Mark Wieczorek (April, 2005).
DOI: 10.5281/zenodo.7831642
title: Codes for "Lithospheric elastic thickness beneath the Caloris basin: Implications for the thermal structure of Mercury"

description: This dataset contains the fortran codes and shell script used to generate data and figure for the article titled with "Lithospheric elastic thickness beneath the Caloris basin: Implications for the thermal structure of Mercury". GMT and SHTOOLS is required for the operation of these code. The source code named LocalizedAdmitCorrV3.f95 is modified from the SHTOOLS example: LocalizedAdmitCorr.f95 written by Mark Wieczorek (April, 2005).
DOI: 10.5281/zenodo.7831643
title: Codes for "Lithospheric elastic thickness beneath the Caloris basin: Implications for the thermal structure of Mercury"

description: This dataset contains the fortran codes and shell script used to generate data and figure for the article titled with "Lithospheric elastic thickness beneath the Caloris basin: Implications for the thermal structure of Mercury". GMT and SHTOOLS is required for the operation of these code. The source code named LocalizedAdmitCorrV3.f95 is modified from the SHTOOLS example: LocalizedAdmitCorr.f95 written by Mark Wieczorek (April, 2005).
DOI: 10.6084/m9.figshare.22448398
title: 2022p TBD (Oruni et al) v5_supplementary table1.docx

description: <strong>Table S1: Re-designed primers for genes used in the RT-qPCR for </strong><em><strong>Anopheles gambiae s.s </strong></em>
DOI: 10.6084/m9.figshare.22638916
title: qPCR Ct-values for the different groups of mosquitoes exposed and unexposed to insecticides

description: The excel files contain qPCR Ct-values ran on AriaMX machine. These Ct-values were obtained from different mosquito groups exposed and not exposed to insecticides as summarised within the excel sheets.
DOI: 10.6084/m9.figshare.22638916.v1
title: qPCR Ct-values for the different groups of mosquitoes exposed and unexposed to insecticides

description: The excel files contain qPCR Ct-values ran on AriaMX machine. These Ct-values were obtained from different mosquito groups exposed and not exposed to insecticides as summarised within the excel sheets.
DOI: 10.6084/m9.figshare.22638964
title: qPCR AriaMx files for the different groups of mosquitoes exposed and unexposed to insecticides

description: The AriaMX files contain qPCR templates that were ran on AriaMX machine and used to extract the Ct-values of different mosquito groups exposed and not exposed to insecticides. The name of the AriaMx files correspond to the names of the excel sheets uploaded. For instance; excel file; plateWT1_Deltamethrin exposed_p4 AA1 M2 gste4 coe 4j5 p3 gste5 _Ct-values.xlsx corresponds to the AriaMx file; qPCR_plateWT1.amxd and so on.
DOI: 10.6084/m9.figshare.22638994
title: TedSim simulated data (tutorial)

description: TedSim (Pan et al., Nucleic Acids Research 2022) simulated scRNA-seq dataset of a differentiation trajectory containing 8,448 cells and 500 genes, provided as an AnnData object. For each cell, the dataset includes a (raw-counts) gene expression vector as well as a lineage barcode. We use this dataset to demonstrate the moslin method for mapping lineage-traced single-cells across time points in our tutorial. <br> Additionally, the AnnData object contains - the simulated lineage tree. - cell assignments to the TedSim state tree. - precomputed lineage cost matrices. - a coupling of early to late cells based on the ground-truth simulated lineage tree. <br> Please cite the TedSim software: https://doi.org/10.1093/nar/gkac235
DOI: 10.6084/m9.figshare.22639000
title: HERT Spherical Cap Geant4 Results

description: Post-processed Geant4 simulation data for the instrument analysis of HERT. Each text file is a different incident energy denoted in the name of the file. The number of particles are simulated is also in the name of the text file. From the raw output of Geant4, each simulation that had no energy deposited in the detector stack was removed from the text file, and the number of these events were recorded at the end of each file. This was conducted for more efficient data storage.
DOI: 10.6084/m9.figshare.22639000.v1
title: HERT Spherical Cap Geant4 Results

description: Post-processed Geant4 simulation data for the instrument analysis of HERT. Each text file is a different incident energy denoted in the name of the file. The number of particles are simulated is also in the name of the text file. From the raw output of Geant4, each simulation that had no energy deposited in the detector stack was removed from the text file, and the number of these events were recorded at the end of each file. This was conducted for more efficient data storage.
DOI: 10.34740/kaggle/dsv/5415186
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.7618683
title: Digital Aristoteles Latinus Environment 2.1

description: DALE 2.1 is the first release of DALE on GitHub. It contains the current documentation file of the project, the current RELAXNG schema, and the XML files I created based on the schema.
DOI: 10.5281/zenodo.7618682
title: Digital Aristoteles Latinus Environment 2.1

description: DALE 2.1 is the first release of DALE on GitHub. It contains the current documentation file of the project, the current RELAXNG schema, and the XML files I created based on the schema.
DOI: 10.5281/zenodo.7831758
title: desmognathus_orestes_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7831757
title: desmognathus_orestes_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7687830
title: Supplemental Information to Climate-driven habitat shifts of high-ranked prey species structure Late Upper Paleolithic hunting

description: The data provided here are the supplemental information accompanying Yaworsky et al, 2023 in the journal <em>Scientific Reports</em>. These data represent the following, which are referenced in the published work at DOI: 10.1038/s41598-023-31085-x. <strong>Below is the legend for the Supplementary Information</strong>, including how it is referenced within the text of the publication, the file name, and a brief description. More thorough descriptions of the data can be found within the publication in <em>Scientific Reports</em>. <strong>Supplementary 1</strong> – <em>UpperPaleoDietV4.html</em> – HTML document of the analyses performed and presented in the paper. This is a Markdown document compiled in R with R code chunks and descriptions. <strong>Supplementary 2</strong> – <em>Support Information 2.docx</em> – Word document containing supplementary tables 2 and 3. <strong>Supplementary 3</strong> – <em>ArchaeoloigcalDataset_v8.csv</em> – Archaeological data referenced in the Material and Methods. These data are necessary for running the code presented in SI 1. <strong>Supplementary 4</strong> – <em>EuroUpperPaleoFaunas_v6.csv</em> – Zooarchaeological data referenced in the Material and Methods. These data are necessary for running the code presented in SI 1. <strong>Supplementary 5 </strong>– <em>Lupo2016.csv</em> – Data of Arficant fauna weight derived from table in Lupo and Schmitt 2016 (Table 2). These data are necessary for running the code presented in SI 1. <strong>Supplementary 6</strong> – <em>PushkinaRaia_FaunaWeights.csv</em> – Data of Pleistocene fauna weights derived from table in Pushkina and Raia 2008 (Table 1). These data are necessary for running the code presented in SI 1. <strong>Supplementary 7</strong> – <em>environmental_BG.csv</em> – Data representing background environmental conditions derived from the CHELSA TRaCE21k data. These data are necessary for running the code in SI 1. For more information on the data, methods, and results, please see the main paper.
DOI: 10.5281/zenodo.7687831
title: Supplemental Information to Climate-driven habitat shifts of high-ranked prey species structure Late Upper Paleolithic hunting

description: The data provided here are the supplemental information accompanying Yaworsky et al, 2023 in the journal <em>Scientific Reports</em>. These data represent the following, which are referenced in the published work at DOI: 10.1038/s41598-023-31085-x. <strong>Below is the legend for the Supplementary Information</strong>, including how it is referenced within the text of the publication, the file name, and a brief description. More thorough descriptions of the data can be found within the publication in <em>Scientific Reports</em>. <strong>Supplementary 1</strong> – <em>UpperPaleoDietV4.html</em> – HTML document of the analyses performed and presented in the paper. This is a Markdown document compiled in R with R code chunks and descriptions. <strong>Supplementary 2</strong> – <em>Support Information 2.docx</em> – Word document containing supplementary tables 2 and 3. <strong>Supplementary 3</strong> – <em>ArchaeoloigcalDataset_v8.csv</em> – Archaeological data referenced in the Material and Methods. These data are necessary for running the code presented in SI 1. <strong>Supplementary 4</strong> – <em>EuroUpperPaleoFaunas_v6.csv</em> – Zooarchaeological data referenced in the Material and Methods. These data are necessary for running the code presented in SI 1. <strong>Supplementary 5 </strong>– <em>Lupo2016.csv</em> – Data of Arficant fauna weight derived from table in Lupo and Schmitt 2016 (Table 2). These data are necessary for running the code presented in SI 1. <strong>Supplementary 6</strong> – <em>PushkinaRaia_FaunaWeights.csv</em> – Data of Pleistocene fauna weights derived from table in Pushkina and Raia 2008 (Table 1). These data are necessary for running the code presented in SI 1. <strong>Supplementary 7</strong> – <em>environmental_BG.csv</em> – Data representing background environmental conditions derived from the CHELSA TRaCE21k data. These data are necessary for running the code in SI 1. For more information on the data, methods, and results, please see the main paper.
DOI: 10.34740/kaggle/dsv/5415504
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.5281/zenodo.6523536
title: Comparison of dynamical cores in simulating SSWs

description: These files are the result or the initial field of my simulation with CESM. Detail of each file follows : 1) Files, begin with EUL, FV, SE, WeakDD or PF70, are 10 hPa zonal-mean zonal wind, 10 hPa zonal-mean temperature difference between 60ºN and pole. 2) Archived file "initial.zip" contains 3 files for 3 dynamical cores.
DOI: 10.5281/zenodo.6523537
title: Result of Dycore Comparison in CESM with GP09 configuration

description: These files contain 1) 10 hPa zonal-mean zonal wind 2) 10 hPa zonal-mean temperature difference between 60ºN and pole of the result of Park et al. 2022. The first word of each filename indicates type of experiment. (Ex.; SE.10hPa.nc is spectral element core experiment)
DOI: 10.5281/zenodo.7773038
title: Comparison of dynamical cores in simulating SSWs

description: These files are the result or the initial field of my simulation with CESM. Detail of each file follows : 1) Files, begin with EUL, FV, SE, WeakDD or PF70, are 10 hPa zonal-mean zonal wind, 10 hPa zonal-mean temperature difference between 60ºN and pole. 2) Archived file "initial.zip" contains 3 files for 3 dynamical cores.
DOI: 10.5281/zenodo.7831770
title: Comparison of dynamical cores in simulating SSWs

description: These files are the result or the initial field of my simulation with CESM. Detail of each file follows : 1) Files, begin with EUL, FV, SE, WeakDD or PF70, are 10 hPa zonal-mean zonal wind, 10 hPa zonal-mean temperature difference between 60ºN and pole. 2) Archived file "initial.zip" contains 3 files for 3 dynamical cores.
DOI: 10.5281/zenodo.7831788
title: Comparison of dynamical cores in simulating SSWs

description: These files are the result or the initial field of my simulation with CESM. Detail of each file follows : 1) Files, begin with EUL, FV, SE, WeakDD or PF70, are 10 hPa zonal-mean zonal wind, 10 hPa zonal-mean temperature difference between 60ºN and pole. 2) Archived file "initial.zip" contains 3 files for 3 dynamical cores.
DOI: 10.5281/zenodo.7473496
title: A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in 25 MCL patients at diagnosis compared to relapse, as well as a CNV genelist

description: Supplemental Table 1 shows a complete list of variants which passed filtering described in supplemental methods, that were found in both diagnostic samples and relapsed samples (i.e., shared variants, sheet 1A), variants that were newly detected – N/D (sheet 1B) or newly undetected – N/U (sheet 1C). Gene lists for filtration of variants and CNV changes in genes of special interest are included in the table (sheet 1D). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, DG_AF – Variant Allele frequency in the diagnostic sample, DG_Depth - Read depth in the diagnostic sample, REL_AF - Variant Allele frequency in the relapsed sample, REL_Depth - Read depth in the relapsed sample, SNV - Single Nucleotide Variant, and CNV - Copy Number Variation.
DOI: 10.5281/zenodo.7473497
title: A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in 25 MCL patients at diagnosis compared to relapse, as well as a CNV genelist

description: Supplemental Table 1 shows a complete list of variants which passed filtering described in supplemental methods, that were found in both diagnostic samples and relapsed samples (i.e., shared variants, sheet 1A), variants that were newly detected – N/D (sheet 1B) or newly undetected – N/U (sheet 1C). Gene lists for filtration of variants and CNV changes in genes of special interest are included in the table (sheet 1D). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, DG_AF – Variant Allele frequency in the diagnostic sample, DG_Depth - Read depth in the diagnostic sample, REL_AF - Variant Allele frequency in the relapsed sample, REL_Depth - Read depth in the relapsed sample, SNV - Single Nucleotide Variant, and CNV - Copy Number Variation.
DOI: 10.5281/zenodo.7831789
title: A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in 25 MCL patients at diagnosis compared to relapse, as well as a CNV genelist

description: Supplemental Table 1 shows a complete list of variants which passed filtering described in supplemental methods, that were found in both diagnostic samples and relapsed samples (i.e., shared variants, sheet 1A), variants that were newly detected – N/D (sheet 1B) or newly undetected – N/U (sheet 1C). Gene lists for filtration of variants and CNV changes in genes of special interest are included in the table (sheet 1D). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, DG_AF – Variant Allele frequency in the diagnostic sample, DG_Depth - Read depth in the diagnostic sample, REL_AF - Variant Allele frequency in the relapsed sample, REL_Depth - Read depth in the relapsed sample, SNV - Single Nucleotide Variant, and CNV - Copy Number Variation.
DOI: 10.5281/zenodo.7831810
title: Thermal Power Prediction Data set

description: Haoning Jia 's graduation thesis chapter three raw data.
DOI: 10.5281/zenodo.7831809
title: Thermal Power Prediction Data set

description: Haoning Jia 's graduation thesis chapter three raw data.
DOI: 10.6084/m9.figshare.22635064
title: ALBM input data

description: Ancillary input data for ALBM simulations <br> https://github.com/tanzeli1982/ALBM