cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ds4tb-9jw73
title: Caulobacter crescentus

description: Raw data files of Caulobacter crescentus
description: <strong>Tilt Series Date:</strong> 2018-10-05</p>
<strong>Data Taken By:</strong> Lujia Zhang</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 252.8 eV/Å²,  defocus: -10.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> For the research of pilus, Del E from Partick</p>
<strong>Purification / Growth Conditions / Treatment:</strong> swarmer cell, PVP</p>
<strong>Sample Preparation:</strong> force 4, time 6, humidity 100%, temp. 22</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-10-05-23/rawdata/</p>targ23.mrc,  Tilt Series (Pixel Size 0.3712 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lza2018-10-05-23/rawdata/targ23.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.7btrat
title: Occurrence Download

description: A dataset containing 169789 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carex canescens"
 ]
}

 The dataset includes 169789 records from 756 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006418-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/d4xtq-z8042
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-09-30</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-30-28/rawdata/</p>RCC745_G1tovis_164.mrc,  Tilt Series (Pixel Size 1.26 nm), 763.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-30-28/rawdata/RCC745_G1tovis_164.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_164.rec,  Reconstruction (Pixel Size 1.26 nm), 134.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-30-28/3dimage_12143/RCC745_G1tovis_164.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/fag96-qk713
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-09-14</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-62/rawdata/</p>RCC745_G1tovis_114.mrc,  Tilt Series (Pixel Size 1.26 nm), 729.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-62/rawdata/RCC745_G1tovis_114.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_114.rec,  Reconstruction (Pixel Size 1.26 nm), 259.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-09-14-62/3dimage_12077/RCC745_G1tovis_114.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sm4da-6xb43
title: E.coli   "strain 4" I241E

description: E.coli chemotaxis mutant  "strain 4" I241EReceptors (tsr on chromosome) locked in a CheA activating state
description: <strong>Tilt Series Date:</strong> 2012-03-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain generated by John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells grown in TB (gentamycin) overnight at 30 degrees. Diluted in fresh buffer and grown to log phase. Then incubated with penicillin for one hour.</p>
<strong>Sample Preparation:</strong> Vitrobot settings: -4 offset, 3.5 s blot time, no drain, 100 percent humidity</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-03-06-16/rawdata/</p>strain4marchsix0016.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-03-06-16/rawdata/strain4marchsix0016.mrc"
        > <i class="download icon"></i> Download </a></p>

        strain4marchsix0016_part128_18.rec,  Reconstruction (Pixel Size 1.288 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-03-06-16/3dimage_17504/strain4marchsix0016_part128_18.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/p25sh-k3v05
title: Rhodobacter sphaeroides JPA 1558

description: cryosections of R sphaeroides strain JPA1558 (TlpT-YFP)
description: <strong>Tilt Series Date:</strong> 2013-06-03</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 33000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Judy Armitage</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grow  (1 day) in SUX medium + Naldixic acid (6.25 µl of 20mg/ml stock) + Kanamycin (2.5 µl stock 1000x) + 25 µl 10mM IPTG.*Spin down 5ml per strain, resuspend pellets (barely visible) in SUX medium + Kanamycin (2.5 µl stock 1000x) + 25 µl 10mM IPTG.*grow overnight.</p>
<strong>Sample Preparation:</strong> cryosectioning by MArk LAdinsky</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-06-03-37/rawdata/</p>atlas_grid-2_7x7cryosections0014.mrc,  Tilt Series (Pixel Size 0.38 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-06-03-37/rawdata/atlas_grid-2_7x7cryosections0014.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas_grid-2_7x7cryosections0014_full.rec,  Reconstruction (Pixel Size 0.76 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-06-03-37/3dimage_27069/atlas_grid-2_7x7cryosections0014_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.kpx6k8
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Elymus brevipes"
 ]
}

 The dataset includes 147 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005956-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/9d75v-c9523
title: O. tauri G1

description: Ostreococcus tauri cryosections
description: <strong>Tilt Series Date:</strong> 2009-12-10</p>
<strong>Data Taken By:</strong> Lu Gan</p>
<strong>Species / Specimen:</strong> Ostreococcus tauri</p>
<strong>Strain:</strong> RCC745</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-66.0°, 66.0°), step: 1.5°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> prepared by Lu Gan at Caltech; high-pressure frozen and cryosectioned by Mark Ladinsky; data collected by Lu Gan; processed by Lu Gan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> 9h in 1mM Hydroxyurea, 12h in 30uM Propyzamide, 3h Propyzamide washout</p>
<strong>Sample Preparation:</strong> Cryoprotectant: 10mg/ml BSA, 2X 10nm gold, 20% Dextran; Cells mixed w/ cryoprotectant shortly before HPF </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-10/rawdata/</p>RCC745_G1tovis_280.mrc,  Tilt Series (Pixel Size 0.96 nm), 755.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-10/rawdata/RCC745_G1tovis_280.mrc"
        > <i class="download icon"></i> Download </a></p>

        RCC745_G1tovis_280.rec,  Reconstruction (Pixel Size 0.96 nm), 491.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/lga2009-12-10-10/3dimage_12271/RCC745_G1tovis_280.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y68kt-wpd58
title: Myxococcus xanthus delta-tsaP

description: Grid box YWC065
description: <strong>Tilt Series Date:</strong> 2014-05-12</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Myxococcus xanthus</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain form Lotte Sogaard-Andersen</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown 48 hr in shaking CTT medium at 30 degrees without antibiotics. OD600=0.7</p>
<strong>Sample Preparation:</strong> Vitrobot settings: 100% humidity, 3µl sample, 10 mg/ml BSA treated gold. -4 offset, 4 sec blot time, 1s drain. Ethane/propane mix. Grid: Quantifoil Cu 2/2 Finder. 10 nm gold beads.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-05-12-8/rawdata/</p>20140512_YWC065_30006.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-05-12-8/rawdata/20140512_YWC065_30006.mrc"
        > <i class="download icon"></i> Download </a></p>

        20140512_YWC065_30006_part131_1.rec,  Reconstruction (Pixel Size 1.56 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2014-05-12-8/3dimage_42394/20140512_YWC065_30006_part131_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/yvvt2-q7e82
title: MT310_xyl(+)_Cd50uM(+)

description: Raw data files of MT310_xyl(+)_Cd50uM(+)
description: <strong>Tilt Series Date:</strong> 2009-06-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> The MT310 strain was constructed by Martin Thanbichler; cells were cultured and treated by Zhuo Li; data were collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The cells were induced by xylose and treated with 50 uM CdCl2 for 20 hours.</p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-21/rawdata/</p>09jun09a_Cd50uM_040.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-21/rawdata/09jun09a_Cd50uM_040.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun09a_Cd50uM_040_full.rec,  Reconstruction (Pixel Size 1.9 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-06-09-21/3dimage_5145/09jun09a_Cd50uM_040_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.s5dx5e
title: Occurrence Download

description: A dataset listing the 3816 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "OccurrenceStatus is Present",
 "Year is 2021"
 ]
}

 The dataset's 3816 records were derived from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025341-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkrmy5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus capensis (Smith, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021743-250525065834625/datasets/export for details.
DOI: 10.57745/2k5pec
title: Stack_Omega3_T0.tif

description: Stack of omega graft 3, time point 0
DOI: 10.57745/3ane64
title: unireconstruction_Omega3_T24.xml

description: X-ray reconstruction parameters omega graft 3, time point 24
DOI: 10.57745/3wi8fe
title: Stack_Omega3_T24.tif

description: Stack of omega graft 3, time point 24
DOI: 10.57745/4jtiyl
title: unireconstruction_Cleft_2_T0.xml

description: X-ray reconstruction parameters cleft graft 2, time point 0
DOI: 10.57745/5bpr4x
title: Stack_Whip_and_Tongue_2_T0.tif

description: Stack of whip and tongue graft 2, time point 0
DOI: 10.57745/5rb0v7
title: unireconstruction_Omega2_T0.xml

description: X-ray reconstruction parameters omega graft 2, time point 0
DOI: 10.57745/7bge3i
title: unireconstruction_WhipandTongue_3_T24.xml

description: X-ray reconstruction parameters whip and tongue graft 3, time point 24
DOI: 10.57745/bbgrdc
title: Stack_FullCleft_2_T24.tif

description: Stack of full cleft graft 2, time point 24
DOI: 10.57745/beiacp
title: Stack_Cleft_1_T0.tif

description: Stack of cleft graft 1, time point 0
DOI: 10.57745/btxykm
title: unireconstruction_Omega2_T24.xml

description: X-ray reconstruction parameters omega graft 2, time point 24
DOI: 10.57745/c3u6tr
title: Stack_Cleft_2_T0.tif

description: Stack of cleft graft 2, time point 0
DOI: 10.57745/ch9mx3
title: Stack_Omega1_T24.tif

description: Stack of omega graft 24, time point 0
DOI: 10.57745/cksmop
title: unireconstruction_FullCleft_1_T24.xml

description: X-ray reconstruction parameters full cleft graft 1, time point 24
DOI: 10.57745/d7z8mo
title: unireconstruction_FullCleft_3_T24.xml

description: X-ray reconstruction parameters full cleft graft 3, time point 24
DOI: 10.5281/zenodo.15597287
title: IJTIMOIY DAVLATCHILIK SHAROITIDA JAMOATCHILIK MUHOKAMALARI TIZIMI FAOLIYATINING TA'MINLANISHI
DOI: 10.5281/zenodo.15597288
title: IJTIMOIY DAVLATCHILIK SHAROITIDA JAMOATCHILIK MUHOKAMALARI TIZIMI FAOLIYATINING TA'MINLANISHI
DOI: 10.60893/figshare.jpr.28961186
title: readme file

description: readme file for Supplementary Material
DOI: 10.60893/figshare.jpr.28961186.v1
title: readme file

description: readme file for Supplementary Material
DOI: 10.60893/figshare.jpr.28961189
title: Supplementary Material

description: Parameters for effective Hamiltonians for 12 CO2 isotopologues
DOI: 10.60893/figshare.jpr.28961189.v1
title: Supplementary Material

description: Parameters for effective Hamiltonians for 12 CO2 isotopologues
DOI: 10.5281/zenodo.16979559
title: A  soil hydraulic properties dataset over China's drylands based on in situ sampling

description: Based on 2,482 saturated hydraulic conductivity sampling points and 1,900 soil water retention curve sampling points, we have compiled a dataset of measured soil hydraulic parameters for China's drylands. This dataset includes saturated hydraulic conductivity values, van Genuchten equation parameters, and fundamental soil physical properties.
DOI: 10.5281/zenodo.16979560
title: A  soil hydraulic properties dataset over China's drylands based on in situ sampling

description: Based on 2,482 saturated hydraulic conductivity sampling points and 1,900 soil water retention curve sampling points, we have compiled a dataset of measured soil hydraulic parameters for China's drylands. This dataset includes saturated hydraulic conductivity values, van Genuchten equation parameters, and fundamental soil physical properties.
DOI: 10.17611/dp/20704465
title: Moment Tensor for August 01, 2022 MW 4.6 (GCMT) ICELAND REGION
DOI: 10.17611/dp/20704471
title: Moment Tensor for August 01, 2022 MW 5.0 (GCMT) FOX ISLANDS, ALEUTIAN ISLANDS
DOI: 10.17611/dp/20704477
title: Moment Tensor for August 01, 2022 MW 4.8 (GCMT) ICELAND REGION
DOI: 10.17611/dp/20704483
title: Moment Tensor for August 01, 2022 MW 4.9 (GCMT) SAMAR, PHILIPPINES
DOI: 10.17611/dp/20704489
title: Moment Tensor for August 02, 2022 MW 5.7 (GCMT) FIJI ISLANDS REGION
DOI: 10.15468/dl.tk2jev
title: Occurrence Download

description: A dataset containing 130210394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 130210394 records from 10563 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004317-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12635530
title: SARS-CoV-2 Sequenzdaten aus Deutschland

description: Ein zentraler Bestandteil einer erfolgreichen Erregersurveillance ist das Verständnis der Verbreitung eines Erregers sowie seiner pathogenen Eigenschaften. Hierbei stellt das Wissen über das Erregergenom eine wichtige Informationsquelle dar. So erlaubt der Nachweis von Mutationen im Genom eines Erregers, Verwandtschaftsbeziehungen zu rekonstruieren, Übertragungswege aufzudecken und Resistenzen vorherzusagen. Die Integrierte Genomische Surveillance (IGS) von SARS-CoV-2 zielt darauf ab, die Verbreitung des Virus und insbesondere von besorgniserregenden Virusvarianten in der Bevölkerung zu überwachen sowie auftretende Veränderungen des Virus genau zu beobachten. Besondere Bedeutung kommt dabei der öffentlichen Bereitstellung der genomischen Daten zu, um Wissenschaftlern in Deutschland und weltweit die Möglichkeit zu eigenständigen Analysen zu eröffnen.

Im Rahmen der Coronavirus-Surveillanceverordnung wurden bis zum 31.05.2023 SARS-CoV-2 Sequenzdaten aus ganz Deutschland über den Deutschen Elektronischen Sequenzdaten-Hub (DESH) an das RKI übermittelt. Mit Ablauf der Verordnung werden künftig Proben durch das IMSSC2 Labornetzwerk bereitgestellt und am RKI sequenziert, analysiert und hier bereitgestellt. Trotz reduzierter  Probenanzahl, wird durch die sorgfältige Auswahl der beteiligten Labore ein repräsentativer Einblick in die Viruspopluation gesichert (Djin Ye Oh  et al. 2022). Zusätzlich werden Sequenzen vom NRZ Coronaviren an der Charité beigetragen um das IMSSC2 Netzwerk zu ergänzen.