cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4t18d/1
title: Red deer (1-h and 15-min fix rates) and roe deer (1-h and 4-h fix rates) relocation data along with environmental predictors

description: Abbreviations: "id": deer identification code (name). "loc_id": relocation stratum."used": binomial response variable (1: used; 0: available). "sun_elev": elevation of the sun with respect to the horizon, in degrees. "solrad_fac": categorical proxy for microclimate conditions (see Table S1 for additional details). "rugged_10": terrain ruggedness derived from the digital elevation model, in meters. "dist_trails": distance to the closest hiking trail, in meters. "ndvi_preds": NDVI."map_reclass": photo-interpreted habitat map of the BFNP from year 2012 "corine_reclass": corine land cover classes. "res5_PC1": 5-m resolution LiDAR, PC1. "res5_PC2": 5-m resolution LiDAR, PC2. "res5_PC3": 5-m resolution LiDAR, PC3. “res5_PC4": 5-m resolution LiDAR, PC4. "res5_PC5": 5-m resolution LiDAR, PC5. "res5_PC6": 5-m resolution LiDAR, PC6.  "res5_PC7": 5-m resolution LiDAR, PC7. “res5_PC8": 5-m resolution LiDAR, PC8. "res5_PC9": 5-m resolution LiDAR, PC9. "res5_PC10": 5-m resolution LiDAR, PC10. "res5_PC11": 5-m resolution LiDAR, PC10. "res10_PC1" : 10-m resolution LiDAR, PC1.  "res10_PC2" : 10-m resolution LiDAR, PC2. "res10_PC3": 10-m resolution LiDAR, PC3. "res10_PC4": 10-m resolution LiDAR, PC4. "res10_PC5": 10-m resolution LiDAR, PC5. "res10_PC6": 10-m resolution LiDAR, PC6. "res10_PC7": 10-m resolution LiDAR, PC7. "res10_PC8": 10-m resolution LiDAR, PC8. "res10_PC9": 10-m resolution LiDAR, PC9. "st_deci": number of deciduous trees. "st_conif": number of conifer trees. "st_dead_all": number of standing or lying dead trees. "UStory": understory vegetation. "MStory": midstory vegetation. "OStory": overstory vegetation. "MeanHeight": mean height of vegetation.
DOI: 10.5255/ukda-sn-852820
title: International health cooperation in the Greater Mekong Subregion
DOI: 10.5281/zenodo.1012726
title: Ecg, Ppg, Rsp Signals From Athletes And Non-Athletes During Exercise - Iamwell

description: A physiological signals database of electrocardiography (ECG), plethysmograph (PPG) and inductive plethysmography-respiration of athletes and non-athletes during an experiment, which includes stages of rest, exercise and rehabilitation
DOI: 10.5285/21a8fca5-8eae-48e4-93c0-bc6b4433e34c
title: Stable isotope data and snow accumulation from the Dyer Plateau ice core, drilled 1989-90, Palmer Land, Antarctic Peninsula

description: A record of the oxygen-isotope ratios and net accumulation from an ice core drilled on Dyer Plateau in the Antarctic Peninsula is presented. This 233 m long ice core was drilled in the southern summer season of 1989/90. The isotope data covers the years 1505 to 1988. The snow accumulation data covers 1840 to 1988.
DOI: 10.5281/zenodo.843624
title: Environmental And Geographic Variables Are Effective Surrogates For Genetic Variation In Conservation Planning

description: <strong>Environmental and geographic variables are effective surrogates for genetic variation in conservation planning</strong>

Jeffrey O. Hanson, Jonathan R. Rhodes, Cynthia Riginos, Richard A. Fuller.

Correspondence should be addressed to jeffrey.hanson@uqconnect.edu.au.

<em>Research summary</em>

Protected areas buffer species from anthropogenic threats and provide places for the processes that generate and maintain biodiversity to continue. However, genetic variation, the raw material for evolution, is difficult to capture in conservation planning, not least because genetic data require considerable resources to obtain and analyze. Here we show that freely available environmental and geographic distance variables can be highly effective surrogates in conservation planning for representing adaptive and neutral intra-specific genetic variation. We obtained occurrence and genetic data from the IntraBioDiv project for 27 plant species collected over the European Alps using a gridded sampling scheme. For each species, we identified loci that were potentially under selection using outlier loci methods, and mapped their main gradients of adaptive and neutral genetic variation across the grid cells. We then used the cells as planning units to prioritize protected area acquisitions. First, we verified that the spatial patterns of environmental and geographic variation were correlated, respectively, with adaptive and neutral genetic variation. Second, we showed that these surrogates can predict the proportion of genetic variation secured in randomly generated solutions. Finally, we discovered that solutions based only on surrogate information secured substantial amounts of adaptive and neutral genetic variation. Our work paves the way for widespread integration of surrogates for genetic variation into conservation

<em>Overview</em>

This repository contains the data and source code that underpins the findings in our manuscript "Environmental and geographic variables are effective surrogates for genetic variation in conservation planning".

To rerun all computational analyses, run `make clean && make all`.


	article
	
		manuscript main text, figures, and supporting information
	
	
	code
	
		R: scripts used to run the analysis
		parameters: files used to run analysis in TOML format
		rmarkdown: files used to compile them manuscript
	
	
	data
	
		raw: raw data used to run the analysis
		intermediate_ results generated during processing
		final: results used in the paper
	
	


<em>Software required</em>


	Operating system
	
		Ubuntu (Trusty 14.04 LTS)
	
	
	Programs
	
		[R (version 3.3.2)](https://www.r-project.org)
		GNU make
		pandoc (version 1.16.0.2+)
		Gurobi (version 7.0.2; academic licenses are available for no cost)
		LaTeX
DOI: 10.5281/zenodo.843625
title: Environmental And Geographic Variables Are Effective Surrogates For Genetic Variation In Conservation Planning

description: <strong>Environmental and geographic variables are effective surrogates for genetic variation in conservation planning</strong>

Jeffrey O. Hanson, Jonathan R. Rhodes, Cynthia Riginos, Richard A. Fuller.

Correspondence should be addressed to jeffrey.hanson@uqconnect.edu.au.

<em>Research summary</em>

Protected areas buffer species from anthropogenic threats and provide places for the processes that generate and maintain biodiversity to continue. However, genetic variation, the raw material for evolution, is difficult to capture in conservation planning, not least because genetic data require considerable resources to obtain and analyze. Here we show that freely available environmental and geographic distance variables can be highly effective surrogates in conservation planning for representing adaptive and neutral intra-specific genetic variation. We obtained occurrence and genetic data from the IntraBioDiv project for 27 plant species collected over the European Alps using a gridded sampling scheme. For each species, we identified loci that were potentially under selection using outlier loci methods, and mapped their main gradients of adaptive and neutral genetic variation across the grid cells. We then used the cells as planning units to prioritize protected area acquisitions. First, we verified that the spatial patterns of environmental and geographic variation were correlated, respectively, with adaptive and neutral genetic variation. Second, we showed that these surrogates can predict the proportion of genetic variation secured in randomly generated solutions. Finally, we discovered that solutions based only on surrogate information secured substantial amounts of adaptive and neutral genetic variation. Our work paves the way for widespread integration of surrogates for genetic variation into conservation

<em>Overview</em>

This repository contains the data and source code that underpins the findings in our manuscript "Environmental and geographic variables are effective surrogates for genetic variation in conservation planning".

To rerun all computational analyses, run `make clean && make all`.


	article
	
		manuscript main text, figures, and supporting information
	
	
	code
	
		R: scripts used to run the analysis
		parameters: files used to run analysis in TOML format
		rmarkdown: files used to compile them manuscript
	
	
	data
	
		raw: raw data used to run the analysis
		intermediate_ results generated during processing
		final: results used in the paper
	
	


<em>Software required</em>


	Operating system
	
		Ubuntu (Trusty 14.04 LTS)
	
	
	Programs
	
		[R (version 3.3.2)](https://www.r-project.org)
		GNU make
		pandoc (version 1.16.0.2+)
		Gurobi (version 7.0.2; academic licenses are available for no cost)
		LaTeX
DOI: 10.4225/08/59e9a694b4fe0
title: Parkes observations for project P871 semester 2017APRS_BPSR_05

description: Fast Radio Bursts (FRBs) are bright, millisecond-duration radio pulses hypothesized to originate at cosmological distances. To date, one FRB has been seen to repeat but their origins remain a puzzling mystery. Some have proposed FRBs come from Crab-like pulsar giant pulses or periods of high activity of distant magnetars. Both mechanisms would generate observable subsequent FRB-like events. In this proposal we directly test this hypothesis by monitoring the fields of two known FRBs to search for repeating pulses that may explain their progenitors. We target two sources with existing multi-wavelength archival images of the field and small DM-derived distances.
DOI: 10.15139/s3/jdiafn
title: [0006] ***Under development***: Broadwater MA, Lee SH, Yu Y, Zhu H, Crews FT, Robinson DL, et al (2017). Adolescent alcohol exposure decreases frontostriatal resting-state functional connectivity in adulthood. Addict Biol 2017(9): 12530.
DOI: 10.5281/zenodo.1034083
title: Data And R Script For 'Early-Life Begging Effort Reduces Adult Body Mass But Strengthens Behavioural Defence Of The Rate Of Energy Intake In European Starlings (Sturnus Vulgaris)'

description: Data files and R script for Dunn et al. "Early-life begging effort reduces adult body mass but strengthens behavioural defence of the rate of energy intake in European starlings (<em>Sturnus vulgaris</em>)"

Includes a single R script that produces all the analyses in the paper. The script makes use of three different .csv data files.
DOI: 10.7487/2017.293.1.1085
title: Ciaran O'Donnell_Corrected

description: corrected files for Celtic Deep zoo and Labadie
DOI: 10.5281/zenodo.1033406
title: Data And R Scripts For The Paper "Source Memory For Intrinsic And Extrinsic Features In Item-Method Directed Forgetting"

description: Data and R scripts from Experiment 1 and 2 of the paper "Source Memory for Intrinsic and Extrinsic Features in Item-method Directed Forgetting".
DOI: 10.5281/zenodo.1033407
title: Data And R Scripts For The Paper "Source Memory For Intrinsic And Extrinsic Features In Item-Method Directed Forgetting"

description: Data and R scripts from Experiment 1 and 2 of the paper "Source Memory for Intrinsic and Extrinsic Features in Item-method Directed Forgetting".
DOI: 10.5281/zenodo.1033410
title: Nmr And Hrms Data - Intermolecular Pummerer Coupling With Carbon Nucleophiles In Non-Electrophilic Media

description: HRMS and NMR characterisation data for all the new compounds reported in the paper

<em><strong>Intermolecular Pummerer Coupling with Carbon Nucleophiles in Non-Electrophilic Media</strong></em>

Angew. Chem. Int. Ed. 2017, DOI: 10.1002/anie.201709715
DOI: 10.5281/zenodo.1033411
title: Nmr And Hrms Data - Intermolecular Pummerer Coupling With Carbon Nucleophiles In Non-Electrophilic Media

description: HRMS and NMR characterisation data for all the new compounds reported in the paper

<em><strong>Intermolecular Pummerer Coupling with Carbon Nucleophiles in Non-Electrophilic Media</strong></em>

Angew. Chem. Int. Ed. 2017, DOI: 10.1002/anie.201709715
DOI: 10.14457/cu.the.2005.1000
title: การพัฒนาแบบจำลองทางคณิตศาสตร์ สำหรับการคาดการณ์ความเข้มข้นฝุ่นละอองภายในอาคาร /
DOI: 10.14457/cu.the.2005.1001
title: การลดความสูญเสียทางการผลิต : กรณีศึกษาโรงงานกระดาษ /
DOI: 10.14457/cu.the.2005.1002
title: การประเมินอายุของหม้อแปลงไฟฟ้าขนาดเล็ก โดยอาศัยการทดสอบเร่งด้วยอุณหภูมิ /
DOI: 10.14457/cu.the.2005.1003
title: การนำกลับคืนของโพลีอีเทอร์โพลีออลชนิดนุ่ม ที่คงค้างในเครื่องกรองแบบใบ /
DOI: 10.14457/cu.the.2005.1004
title: การประเมินวัฎจักรชีวิต สำหรับการเปรียบเทียบการสังเคราะห์อนุภาคนาโนของซิงค์ซัลไฟด์ /
DOI: 10.14457/cu.the.2005.1005
title: การวิเคราะห์เปรียบเทียบการเผาไหม้และสมรรถนะของเชื้อเพลิงปาล์มดิบดีเซล และเชื้อเพลิงดีเซล ในเครื่องยนต์ดีเซลชนิดห้องเผาไหม้ล่วงหน้า /
DOI: 10.14457/cu.the.2005.1006
title: พฤติกรรมการเคลื่อนตัวของเสาดินซีเมนต์ลึก สำหรับงานโครงสร้างกันดิน /
DOI: 10.17632/dyhx8dmcw5.1
title: Data for: Development of a Predictive Model for Extubation Failure in weaning from mechanical ventilation: a retrospective cohort study.
DOI: 10.17632/jb72k856zw.1
title: Data for: Identifying thresholds of logging intensity on dung beetle communities to improve the sustainable management of Amazonian tropical forests

description: Logging information from the sample units - spreadsheet presents details of sampled units and its biological and logging metrics. NRT = Number of removed trees within the 10 ha sampled unit; LocalV = Logging intensity (m3 ha-1) within the 10 ha sampled units; BroadV = logging intensity average (m3 ha-1) in the sampled and its eight neighbour units (90 ha); S-2012 = Pre-logging sampling dates; S-2013 = Post-logging sampling dates; Δ Biom = Dung beetles biomass difference between pre and post-logging collections; Δ Sp = Dung beetle species richness difference between pre and post-logging collections; Δ DRem = Dung removal ratio between pre and post-logging collections; and Δ SBiot = Soil bioturbation ratio between pre and post-logging collections.
DOI: 10.17632/ts475hm8jw.1
title: Data for: Popularity, Likeability, and Peer Conformity: Four Field Experiments

description: Full materials including video and dots stimuli used in the four field experiments as described in the accompanying article.
DOI: 10.17632/txnxsz6zh7.1
title: Data for: Petrogenesis of Alkalic Seamounts in the Galápagos Islands

description: Supplementary data tables containing whole rock compositions and uncertainties for seamount samples in this study
DOI: 10.14457/cu.the.2005.1007
title: การจำแนกวีดีทัศน์กีฬาประเภทคอร์ท โดยใช้ลักษณะวีดีทัศน์ระดับล่าง /
DOI: 10.14457/cu.the.2005.1008
title: การศึกษาการตอบสนองของปริมาณเชื้อไวรัสเอชไอวี ในพลาสมาต่อการรักษาด้วยสตาวูดีน (ดีโฟที) ในขนาดที่ลดลงร่วมกับลามิวดีน (ทรีทีซี) และเอฟฟาวิเรนซ์ ในผู้ติดเชื้อเอชไอวี ที่ไม่เคยได้รับยาต้านไวรัสเอชไอวีมาก่อน /
DOI: 10.14457/cu.the.2005.1009
title: การออกแบบและสร้างมอเตอร์เหนี่ยวนำสำหรับใช้ขับรถจักรยาน /
DOI: 10.14457/cu.the.2005.1010
title: การปรับปรุงคันทางรถไฟที่ก่อสร้างด้วยดินกระจายตัว /
DOI: 10.14457/cu.the.2005.1011
title: การประยุกต์ใช้ก๊าซธรรมชาติและก๊าซหุงต้มในระบบเชื้อเพลิงคู่กับเครื่องยนต์สันดาป ภายในแบบจุดระเบิดด้วยหัวเทียน /
DOI: 10.14457/cu.the.2005.1012
title: การดูดซับน้ำของแผ่นหนัง และความสัมพันธ์ระหว่างความชื้นในหนังกับคุณสมบัติการพับงอ /
DOI: 10.14457/cu.the.2005.1013
title: การลดและควบคุมของเสียของฟองน้ำขึ้นรูปจากแม่พิมพ์ : กรณีศึกษาโรงงานผลิตชิ้นส่วนเบาะยานยนต์ /
DOI: 10.17632/jb72k856zw.2
title: Data for: Identifying thresholds of logging intensity on dung beetle communities to improve the sustainable management of Amazonian tropical forests

description: Logging information from the sample units - spreadsheet presents details of sampled units and its biological and logging metrics. NRT = Number of removed trees within the 10 ha sampled unit; LocalV = Logging intensity (m3 ha-1) within the 10 ha sampled units; BroadV = logging intensity average (m3 ha-1) in the sampled and its eight neighbour units (90 ha); S-2012 = Pre-logging sampling dates; S-2013 = Post-logging sampling dates; Δ Biom = Dung beetles biomass difference between pre and post-logging collections; Δ Sp = Dung beetle species richness difference between pre and post-logging collections; Δ DRem = Dung removal ratio between pre and post-logging collections; and Δ SBiot = Soil bioturbation ratio between pre and post-logging collections.
DOI: 10.17632/bj4ggp8b65.1
title: Replication fork slowing and reversal upon genotoxic stress require PCNA polyubiquitination and ZRANB3 DNA translocase activity. Vujanovic et al.

description: Set of raw data for Vujanovic et al., Mol Cell 2017
DOI: 10.17632/cf23r9rdmt.1
title: Feeding history shapes food handling behaviors of larval urchin Heliocidaris crassispina

description: Food quantity and quality affect larval growth and survival, and in turn population dynamics of many marine invertebrates. However, few studies have addressed how feeding history affects larval ability to manipulate their food. Here, we focus on the larvae of an ecologically important sea urchin, Heliocidaris crassispina, which have elongated ciliated arm rods for particle capture. Larvae were reared with either full or halved food ration to study the effect of chronic starvation. Individuals were also fasted for different durations to assess the effect of short-term starvation. We also investigated the role of physical contact in food handling by feeding the larvae with algal-sized microplastics that had no nutritional value. When kept in environment devoid of food for 24 hours or more, 6-arm larvae filled up their stomachs significantly faster than those that were fasted for 4 hours, regardless of their previous exposure to microplastics. Larvae reared on a half-food, half-plastic beads diet held onto the plastic particles collected in their stomachs longer than their counterparts fed only with algae. Our study illustrated that food handling in these small planktonic individuals is a highly dynamic process: both long term and short term feeding history could shape subsequent particles handling, and consequently, efficiency of nutrient acquisition.
DOI: 10.17632/fbgc85km6j.5
title: Juicebox sample data

description: Sample data for juicebox.js
DOI: 10.17632/scr4ts98gx.1
title: Cytosolic protein Vms1 links ribosome quality control to mitochondrial and celluler homeostasis. Izawa and Park et al.

description: Images for immunoblots
DOI: 10.17632/wmtzc7w3d7.3
title: Bleb expansion in migrating cells depends on supply of membrane from cell surface invaginations

description: Fiji plugins for cell shape analysis and intensity measurements
DOI: 10.17632/y3ybyx47sx.1
title: Dataset for: Fusion of fibroblast growth factor 21 to a thermally responsive biopolymer forms an injectable depot with sustained anti-diabetic action

description: All raw data associated with the article, separated into individual tabs.
DOI: 10.17632/22gjkdphzb.1
title: mTORC1 Phosphorylates Acetyltransferase p300 to Regulate Autophagy and Lipogenesis

description: This is the original data of the paper "mTORC1 Phosphorylates Acetyltransferase p300 to Regulate Autophagy and Lipogenesis".
DOI: 10.17632/2dsbkn6xcj.1
title: Data for: Cultural Theory of Risk as a Heuristic for Understanding Perceptions of Oil and Gas Development in Eastern Montana, USA.

description: Qualitative interview protocol organized around the key dimensions of the cultural theory of risks' grid-group typology as discussed in Schwarz and Thompson (1990). This protocol was developed to elicit responses about views on nature’s resiliency/fragility, regulatory preferences (grid axis), and sense of community/individualism (group axis).
DOI: 10.17632/ssgznytptk.1
title: Data for: Clinical Nurse Leaders Forging the Path of Population Health

description: Manuscript with reference list attached.
DOI: 10.17632/x3tsv9hjx3.1
title: VPS34 Acetylation Controls Its Lipid Kinase Activity and the Initiation of Canonical and Non-canonical Autophagy. Hua Su et al

description: This is the original data for the paper "".
DOI: 10.17632/sfxr4c6c6g.1
title: Supplementary materials

description: data analysis of the transcriptome of Protaetia brevitarsis Lewis Larvae based on Illumina sequencing
DOI: 10.17632/v39zcgy5kb.1
title: Early and Middle Pleistocene large carnivores of Europe

description: This dataset contains records of the presence of carnivore species weighing more than 10 kg in European sites. Sites dated to the Early and Middle Pleistocene have been included. The dataset provides also the geographic coordinates of the sites (in decimal degrees) and information on the stratigraphical position of the fossils. Only presence/absence data are included (not abundance data). The dataset coatins also basic information on the type of accumulation, when available, chronological data and biochoronological correlations. All occurrences have been assigned to one of the four time intervals: 1.07-1.6 Ma; 0.78-1.07 Ma; 0.5-0.78 and 0.2-0.5 Ma. The list of references is included in a separate sheet.
DOI: 10.17632/zmjvt32gj3.1
title: Experimental data set for morphodyanmics of a width-variable gravel-bed stream: new insights on pool-riffle formation

description: A. The .mat file is a MATLAB structure that can be used in conjunction with the channel width and stationing data files to reproduce Figures 10, 11, 12 and 13 for PRE1 data only (not the additional 4 cited data sets culled from the literature). PRE1 stands for pool-riffle experiment 1 and is the physical experiment that I completed and which is reported in a manuscript submitted to JGR Earth Surface for publication. B. ExpStations.txt is a vector which contains the data subsampling locations along the experimental channel. This list of stations includes the stations used to develop Figures 10, 11, 12 and 13 for PRE1 data only. C. PRE1ExpTimes.txt is a vector which contains the time of experimental observations (in minutes) for PRE1. D. PRE1WidthGradient.mat is the downstream variation of channel width used to develop Figures 11, 12 and 13. Width change calculated between stations given in ExpStations.txt. E. SMChartrand_PRE1_DEMS.zip is a zip folder containing the processed DEMs, and longitudinal and transverse stationing files (both stationing in mm) that can be used to create Figure 5. Stationing in Figure 5 extends from 1500-15500 mm in the longitudinal, and the longitudinal stationing file also contains the experimental channel width.
DOI: 10.17632/zmjvt32gj3.2
title: Experimental data set for morphodyanmics of a width-variable gravel-bed stream: new insights on pool-riffle formation

description: A. The .mat file is a MATLAB structure that can be used in conjunction with the channel width and stationing data files to reproduce Figures 10, 11, 12 and 13 for PRE1 data only (not the additional 4 cited data sets culled from the literature). PRE1 stands for pool-riffle experiment 1 and is the physical experiment that I completed and which is reported in a manuscript submitted to JGR Earth Surface for publication. B. ExpStations.txt is a vector which contains the data subsampling locations along the experimental channel. This list of stations includes the stations used to develop Figures 10, 11, 12 and 13 for PRE1 data only. C. PRE1ExpTimes.txt is a vector which contains the time of experimental observations (in minutes) for PRE1. D. PRE1WidthGradient.mat is the downstream variation of channel width used to develop Figures 11, 12 and 13. Width change calculated between stations given in ExpStations.txt. E. SMChartrand_PRE1_DEMS.zip is a zip folder containing the processed DEMs, and longitudinal and transverse stationing files (both stationing in mm) that can be used to create Figure 5. Stationing in Figure 5 extends from 1500-15500 mm in the longitudinal, and the longitudinal stationing file also contains the experimental channel width.
DOI: 10.5517/ccdc.csd.ccw0kgw
title: CCDC 804898: Experimental Crystal Structure Determination

description: Related Article: Laijin Tian|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.