cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14000502
title: BioTISR: Mitochondria (3D)

description: 3D Mitochondria data of BioTISR dataset.

BioTISR is a biological image dataset for super-resolution microscopy, currently including 2D and 3D time-lapse image pairs of low-and-high resolution images of a variety of biology structures, aiming to provide a high-quality dataset of time-lapse biological SR images for the community to spark more developments of computational SR methods.

At present, 2D dataset includes five specimens (clathrin-coated pits, lysosomes, outer mitochondrial membrane, microtubules, and F-actin) acquired with the GI/TIRF-SIM mode and nonlinear SIM mode of our Multi-SIM system, and 3D data includes three specimens (outer mitochondrial membrane, microtubules, and F-actin) acquired with 3D-SIM mode of the Multi-SIM system. For each type of specimen and each imaging modality, we acquired the raw data from at least 50 distinct regions-of-interest (ROI). For each ROI, we acquired two (3D data) or three (2D data) groups of N-phase × M-orientation × T-timepoint raw images with a constant exposure time but increasing the excitation light intensity, where (N, M, T) are (3, 3, 20) for TIRF-SIM and GI-SIM, (5, 5, 10) for nonlinear SIM, and (3, 5, 10) for 3D-SIM.

The BioTISR dataset is related to the following paper:Chang Qiao, Shuran Liu, Yuwang Wang, Wencong Xu, et al. "Time-lapse Image Super-resolution Neural Network with Reliable Confidence Evaluation for Optical Microscopy." bioRxiv 2024.05.04.592503 (2024), which is an extension of our previously published BioSR dataset (https://www.nature.com/articles/s41592-020-01048-5).
DOI: 10.15468/dl.56a52v
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Holothrix randii Rendle"
 ]
}

 The dataset includes 125 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001955-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13855621
title: Data from: Foundation species support fauna across multiple trophic levels via trophic and non-trophic mechanisms

description: Given here are the data sets for the paper entitled "Foundation species support fauna across multiple trophic levels via trophic and non-trophic mechanisms".1 Biomass of fauna.xlsx This file contains the biomass data for fauna in seagrass beds and unvegetated mudflats.2 Abundance of fauna.xlsx This file contains the abundance data for fauna in seagrass beds and unvegetated mudflats.3 Egg abundance.xlsx This file contains the abundance data for eggs in seagrass beds and unvegetated mudflats.4 Stable isotope of fauna.xlsx This file contains the stable isotope data for all sampled faunal species, as well as basal resources.5 Seagrass.xlsx This file contains the shoot density and canopy height data of seagrasses.6 Survival rate.xlsx This file contains the survival rate data of the tethered consumers in the predation sheltering experiments.7 Feeding trial.xlsx This file contains data on the number of different snail species attracted to the meat bait.8 Stomach content.xlsx This file contains the stomach content data for the consumer species analyzed in our study.The metadata for interpreting the data sets are included in the Excel files.
DOI: 10.5281/zenodo.13855622
title: Data from: Foundation species support fauna across multiple trophic levels via trophic and non-trophic mechanisms

description: Given here are the data sets for the paper entitled "Foundation species support fauna across multiple trophic levels via trophic and non-trophic mechanisms".1 Biomass of fauna.xlsx This file contains the biomass data for fauna in seagrass beds and unvegetated mudflats.2 Abundance of fauna.xlsx This file contains the abundance data for fauna in seagrass beds and unvegetated mudflats.3 Egg abundance.xlsx This file contains the abundance data for eggs in seagrass beds and unvegetated mudflats.4 Stable isotope of fauna.xlsx This file contains the stable isotope data for all sampled faunal species, as well as basal resources.5 Seagrass.xlsx This file contains the shoot density and canopy height data of seagrasses.6 Survival rate.xlsx This file contains the survival rate data of the tethered consumers in the predation sheltering experiments.7 Feeding trial.xlsx This file contains data on the number of different snail species attracted to the meat bait.8 Stomach content.xlsx This file contains the stomach content data for the consumer species analyzed in our study.The metadata for interpreting the data sets are included in the Excel files.
DOI: 10.15468/dl.zk7k65
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Khadia beswickii (L.Bolus) N.E.Br."
 ]
}

 The dataset includes 48 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001956-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.59j8cr
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((115.7184 32.79306, 115.9173 32.79306, 115.9173 32.98321, 115.7184 32.98321, 115.7184 32.79306))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001957-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.66sjkd
title: Occurrence Download

description: A dataset containing 1910 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zizaniopsis miliacea (Michx.) Döll & Asch."
 ]
}

 The dataset includes 1910 records from 98 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001958-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r584kb
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kniphofia typhoides Codd"
 ]
}

 The dataset includes 97 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001959-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djwvpz
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithops lesliei var. lesliei"
 ]
}

 The dataset includes 56 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001960-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2adz72
title: Occurrence Download

description: A dataset containing 4688069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2024"
 ]
}

 The dataset includes 4688069 records from 1749 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001919-241106120511685/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8z2px7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.186973 -33.945784, 149.186973 -33.952521, 149.19371 -33.952521, 149.19371 -33.945784, 149.186973 -33.945784))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059484-240626123714530/datasets/export for details.
DOI: 10.15468/dl.et39cs
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.158397 -33.94803, 148.158397 -33.952521, 148.16738 -33.952521, 148.16738 -33.94803, 148.158397 -33.94803))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059485-240626123714530/datasets/export for details.
DOI: 10.15468/dl.s68zy3
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((131.06864 -0.65913,131.23806 -1.43347,132.5813 -1.09472,132.41188 -0.04198,131.06864 -0.65913))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cacatua galerita (Latham, 1790)"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059486-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4u5dy
title: Occurrence Download

description: A dataset containing 29514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia",
 "Year 1000-2024"
 ]
}

 The dataset includes 29514 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059487-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mwsthy
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.966884 -33.94803, 148.971376 -33.94803, 148.971376 -33.943538, 148.973622 -33.943538, 148.973622 -33.939046, 148.971376 -33.939046, 148.971376 -33.941292, 148.966884 -33.941292, 148.966884 -33.94803)), ((148.966884 -33.94803, 148.960147 -33.94803, 148.960147 -33.952521, 148.964639 -33.952521, 148.964639 -33.954767, 148.966884 -33.954767, 148.966884 -33.94803)), ((148.971376 -33.939046, 148.971376 -33.932309, 148.966884 -33.932309, 148.966884 -33.939046, 148.971376 -33.939046)))"
 ]
}

 The dataset includes 22 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059488-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybn8vv
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.0118 -33.94803, 149.0118 -33.952521, 149.014046 -33.952521, 149.014046 -33.94803, 149.0118 -33.94803))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059490-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26531329
title: Adaptation to floods: exploring coleoptile variability for flooding resilience of direct seeded rice during germination

description: Variations in coleoptile elongation offer insights into rice adaptation to flooding stress during germination. Unfortunately, this trait remains understudied in African germplasms despite the prevalent direct seeding practice prone to floods. To address this gap, 44 rice genotypes, including anaerobic germination-tolerant and susceptible checks, underwent screening for coleoptile elongation after submergence in glass bottles. The Anaerobic Response Index (ARI) and Anaerobic Tolerance Index (ATI) were used, forming six clusters highlighting diverse elongation abilities. Cluster III, comprising genotypes NERICA 7, Kanamalia, Wahiwahi, Rojomena 271/10, Kubwa jinga, Faya mafuta, Mwasungo, and Ciherang Sub1 AG1 AG2, demonstrated potential for selection and adaptation to flooding, showing promising elongation characteristics. Positive correlations (0.675 for ARI, 0.66 for ATI) with anaerobic germination percentage underscored the link between elongation and germination. These findings not only advance our understanding of rice’s flood adaptability in Africa but also provide crucial breeding materials for enhancing direct-seeded rice resilience. Therefore, the promising genotypes identified in this study with enhanced coleoptile elongation mechanisms for surviving early floods following seeding are relevant for breeding initiatives aimed at increasing crop emergence and survival during these early flooding events. This resilience will ultimately enhance production and address food security challenges for farmers in flood-prone areas.
DOI: 10.6084/m9.figshare.26531329.v1
title: Adaptation to floods: exploring coleoptile variability for flooding resilience of direct seeded rice during germination

description: Variations in coleoptile elongation offer insights into rice adaptation to flooding stress during germination. Unfortunately, this trait remains understudied in African germplasms despite the prevalent direct seeding practice prone to floods. To address this gap, 44 rice genotypes, including anaerobic germination-tolerant and susceptible checks, underwent screening for coleoptile elongation after submergence in glass bottles. The Anaerobic Response Index (ARI) and Anaerobic Tolerance Index (ATI) were used, forming six clusters highlighting diverse elongation abilities. Cluster III, comprising genotypes NERICA 7, Kanamalia, Wahiwahi, Rojomena 271/10, Kubwa jinga, Faya mafuta, Mwasungo, and Ciherang Sub1 AG1 AG2, demonstrated potential for selection and adaptation to flooding, showing promising elongation characteristics. Positive correlations (0.675 for ARI, 0.66 for ATI) with anaerobic germination percentage underscored the link between elongation and germination. These findings not only advance our understanding of rice’s flood adaptability in Africa but also provide crucial breeding materials for enhancing direct-seeded rice resilience. Therefore, the promising genotypes identified in this study with enhanced coleoptile elongation mechanisms for surviving early floods following seeding are relevant for breeding initiatives aimed at increasing crop emergence and survival during these early flooding events. This resilience will ultimately enhance production and address food security challenges for farmers in flood-prone areas.
DOI: 10.15468/dl.nvxfea
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.929325 -33.952521, 147.929325 -33.954767, 147.931571 -33.954767, 147.931571 -33.952521, 147.929325 -33.952521))"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059491-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26531323
title: STROBE-checklist of the quantified method for blood clot detection in the extraction socket .docx

description: STROBE-checklist of the quantified method for blood clot detection in the extraction socket
DOI: 10.15468/dl.3qzjay
title: Occurrence Download

description: A dataset containing 1873518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Larus canus Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 1873518 records from 606 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059489-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.52qe5w
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.027521 -33.954767, 149.032012 -33.954767, 149.032012 -33.957013, 149.034258 -33.957013, 149.034258 -33.94803, 149.032012 -33.94803, 149.032012 -33.952521, 149.027521 -33.952521, 149.027521 -33.954767)), ((149.027521 -33.954767, 149.025275 -33.954767, 149.025275 -33.957013, 149.027521 -33.957013, 149.027521 -33.954767)))"
 ]
}

 The dataset includes 63 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059492-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxwnmx
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron alticolum Sleumer"
 ]
}

 The dataset includes 21 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059493-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6gjdnd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.110615 -33.952521, 149.110615 -33.954767, 149.117353 -33.954767, 149.117353 -33.952521, 149.110615 -33.952521))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059494-240626123714530/datasets/export for details.
DOI: 10.15468/dl.k2qufa
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron alpicola Rehder & E.H.Wilson"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059495-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zyng8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.155531 -33.952521, 149.155531 -33.957013, 149.162269 -33.957013, 149.162269 -33.954767, 149.157777 -33.954767, 149.157777 -33.952521, 149.155531 -33.952521))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059496-240626123714530/datasets/export for details.
DOI: 10.15468/dl.htazh6
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.960147 -33.954767, 148.960147 -33.957013, 148.957901 -33.957013, 148.957901 -33.959259, 148.962393 -33.959259, 148.962393 -33.954767, 148.960147 -33.954767))"
 ]
}

 The dataset includes 34 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059497-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8ra2d
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.131447 -33.94803, 148.131447 -33.961504, 148.135939 -33.961504, 148.135939 -33.94803, 148.131447 -33.94803))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059498-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.62nhjk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.823153 -33.954767, 148.823153 -33.961504, 148.827645 -33.961504, 148.827645 -33.954767, 148.823153 -33.954767))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059499-240626123714530/datasets/export for details.
DOI: 10.15468/dl.xsc85g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.088157 -33.954767, 149.088157 -33.961504, 149.094895 -33.961504, 149.094895 -33.957013, 149.090403 -33.957013, 149.090403 -33.954767, 149.088157 -33.954767))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059501-240626123714530/datasets/export for details.
DOI: 10.15468/dl.zq5rfg
title: Occurrence Download

description: A dataset containing 610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Germany, China, Denmark, Austria, Ireland, Italy, Latvia, Netherlands, Portugal)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron alutaceum Balf.fil. & W.W.Sm."
 ]
}

 The dataset includes 610 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059502-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.74vbhb
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((149.142057 -33.952521, 149.142057 -33.954767, 149.135319 -33.954767, 149.135319 -33.957013, 149.144302 -33.957013, 149.144302 -33.961504, 149.148794 -33.961504, 149.148794 -33.954767, 149.144302 -33.954767, 149.144302 -33.952521, 149.142057 -33.952521)), ((149.148794 -33.961504, 149.148794 -33.968242, 149.15104 -33.968242, 149.15104 -33.961504, 149.148794 -33.961504)))"
 ]
}

 The dataset includes 45 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059503-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.znkfvx
title: Occurrence Download

description: A dataset containing 694059 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galerida cristata (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 694059 records from 635 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059500-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.