cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-2cu-7xzb
title: Ritthem Dorpsweg Ritthem Dorpsweg. Gemeente Vlissingen. Archeologisch Bureauonderzoek en Inventariserend Veldonderzoek door middel van verkennende boringen

description: &lt;p&gt;De initiatiefnemer heeft het voornemen om 7 nieuwbouwwoningen te realiseren aan de Dorpsweg te Ritthem. In het kader van de hiertoe benodigde omgevingsvergunning heeft Artefact! Advies en Onderzoek in Erfgoed een archeologisch vooronderzoek uitgevoerd.&lt;/p&gt;&lt;p&gt;Dit onderzoek bestond in eerste instantie uit een bureauonderzoek waarbij een gespecificeerd verwachtingsmodel werd opgesteld voor het plangebied. Dit model is vervolgens getoetst door het uitvoeren van een inventariserend veldonderzoek door middel van boringen (verkennende fase). Tijdens deze verkennende fase werden de landschappelijke vormeenheden bepaald met als doel kansarme zones uit te sluiten en kansrijke zones aan te duiden voor eventuele volgende vormen van onderzoek. Op basis van de resultaten van dit onderzoek kan gesteld worden dat: - de middelhoge verwachting voor het finaal-paleolithicum en mesolithicum in de bovenzijde van het dekzand, dat verwacht werd vanaf 5,50 m -mv (4,75 m -NAP) wegens de diepteligging van dit niveau niet kon worden getoetst en zodoende behouden blijft.&lt;br&gt;- de middelhoge verwachting voor het Laat-Neolithicum op het niveau van het Laagpakket van Wormer en de late Ijzertijd-Romeinse tijd op het niveau van het Hollandveen Laagpakket worden bijgesteld naar geen verwachting. In het volledige plangebied zijn de archeologische resten uit beide periodes onder invloed van de voormalige geul geërodeerd. Om diezelfde reden komt ook de lage verwachting voor de Bronstijd en vroege Ijzertijd te vervallen.&lt;br&gt;- op het niveau van het Laagpakket van Walcheren er een hoge verwachting blijft gelden voor de Middeleeuwen en lage verwachting voor de Nieuwe tijd, wegens het aantreffen van respectievelijk een doorwerkte cultuurlaag op een diepte variërend tussen 0,30 en 0,50 m -mv (tussen 0,75 en 0,47 m +NAP) en een intacte top van een kreekrug van het Laagpakket van Walcheren op een diepte variërend tussen 0,50 en 0,85 m -mv (tussen 0,53 m +NAP en 0,05 m -NAP). Dergelijke kreekruggen boden immers uiterst aantrekkelijke bewoningsmogelijkheden. Gecombineerd met de directe nabijheid van de historische kern (kerk, motte/vliedberg) is de kans hoog dat binnen het plangebied vindplaatsen uit de middeleeuwen voorkomen.&lt;/p&gt;
DOI: 10.5281/zenodo.17105429
title: Supplementary Files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen"

description: Supplementary files for "Historic transposon mobilisation waves create distinct pools of adaptive variants in a major crop pathogen" by Baril, Puccetti, and Croll, 2025. 

 

Abstract:

Transposable elements (TEs) shape host-pathogen interactions and contribute to antimicrobial resistance, but how adaptive TEs arise in populations and how historical contingencies affect TE dynamics remains unclear. Fungal crop pathogens provide unique frameworks to address such questions due to spatially explicit sampling and well-characterized niches. We characterise TE evolutionary dynamics in 1,953 publicly available genomes across the global distribution range of the major wheat pathogen Zymoseptoria tritici. We characterise genomic diversity, benchmark methods to infer TE insertion polymorphism, and assess TEs as a source of adaptive variation. Across ~3.2 million annotated TE loci, we find substantial variation in TE content within and across populations. TE activity surged during the pathogen's expansion from the Middle East, with distinct activity profiles in derived populations. TE-mediated adaptation emerged from waves of TE mobilization, with the highest TE activity observed over as little as 25 years. 45 TE loci within 1kb of 49 host genes show local adaptation signatures, likely related to adaptation to antifungals and the plant host environment. This work highlights the power of vast genomic datasets to unravel intraspecies TE invasion histories and pinpoint factors driving recent adaptation and argues for deep population-level TE surveys to uncover molecular drivers of adaptive evolution.

README contains description of files contained in this repository. All supplementary materials related to this manuscript are supplied in this repository.
DOI: 10.60641/d4df-w150
title: Sensitive Discipline - Do and Don't

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Sensitive Discipline - Do and Don't tasks aim to measure parental sensitivity and discipline by observing a parent-child interaction when the parent has to instruct the child to do something (e.g., clean up toys, "Do"), and when parent has to forbid the child to do something (e.g., do not touch the toys while the parent plays with them, "Don't").
description: During the first three years of the Early Childhood Cohort, the 'Do' task consisted of cleaning up toys and the 'Don't' task consisted of not being allowed to touch the fun toys. The only, relatively boring, toy that could be played with was a rubber duck (in year one), a toy boat (in year two), or a plush toy (in year three). The 'Don't' part lasted 4 minutes, of which the first 2 minutes the child was not allowed to touch any toys. The 'Do' part lasted max. 5 minutes, with 8 minutes of free play in between. During year 5 and 6 of the Early Childhood Cohort and year 1 and 2 of the Middle Childhood Cohort, the 'Do' task consisted of sorting either beads or elastic bands by color and the 'Don't' task consisted of not being allowed to watch the fun movie their primary parent was watching next to them while they are doing their 'boring' task. In year 3 of the Middle Childhood, the 'Don't' part remained the same, however the 'Do' part was now a writing task. The whole combined Do/Don't task lasted 8 minutes.
DOI: 10.60641/p8a5-1z15
title: Confusion, Hubbub, and Order Scale (CHAOS)

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Confusion, Hubbub and Order Scale (CHAOS) is a parent-report measure to rate the degree of ‘environmental confusion’ in the home, referring to high levels of noise, crowding and home traffic patterns. The CHAOS measure is completed by parents to assess the characteristics of noise, confusion, clutter, hubbub, frenetic activities, and disorganization in the home environment.
DOI: 10.60641/83jd-dd96
title: Delay Discounting - Candy

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Delay Discounting - Candy (real time) task is a delay gratification task that aims to measure impulsivity (behavioral control) by giving the child the option to either receive one piece of candy now or more candy later.
description: Children were first presented with two options, they could either eat one piece of candy immediately or wait until the lab- or home-visit was halfway done and receive two pieces candy. Halfway during the visit, the children who decided to wait for more candy at the start of the visit, were then presented with two options: they could either get two pieces of candy now or wait and receive three pieces of candy at the end of the visit. The researcher reported their choices.
DOI: 10.60641/29yz-nh08
title: E-diary - Mood children

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The E-diary Daily Structure and Activities of the Children - Mood Child assesses the mood of the children through self-reporting in the Upinion smartphone app for several times per day. Mood is assessed in terms of energetic arousal (tired-alert, full of energy-no energy), valence (content-discontent, good-not good) and calmness (relaxed-tensed, restless-calm).
DOI: 10.15468/dl.derbyt
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Rhacocleis germanica (Herrich-Schäffer, 1840)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 196 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026498-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60641/0d90-3256
title: Secure Base Script Task (SBS)

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Secure Base Script Task (SBS) aims to measure one's secure base script/attachment representations by giving the participant a list of words with which they have to create a coherent story.
DOI: 10.60641/5dbf-d302
title: Hair samples - Cortisol

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: A hair sample is a collection of hair strands, which are usually cut from a person's head. Hair samples usually contain hair that has grown over the last 12 months.
description: To collect hair samples to assess cortisol, a strain of hair at the at the base of the vertex posterior of the scalp was selected and cut right at the scalp. Hair was put into foil and stored at a dark, room-temperature location until sent to the Dresden Lab Service GmbH in Germany for analysis. The most proximal 2 cm of hair were sectioned and the hair was minced and cortisol was extracted. Liquid chromatography–mass spectrometry (LC–MS/MS) was used for cortisol quantification.
DOI: 10.60641/je3m-s878
title: fMRI - Social Network Aggression Task

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The fMRI - Social Network Aggression Task measures brain activity during the Social Network Aggression Task, in which the child can respond aggressively in response to different types of peers.
description: The SNAT was presented on a screen, viewed through a mirror attached to the head coil. Functional runs of the SNAT were acquired using a T2*-weighted echo-planar imaging (EPI) technique. The first two volumes (dummy volumes) were discarded for T1 saturation equilibration. The imaging parameters used remained constant throughout the waves. During the Early Childhood Cohort wave, the SNAT consisted of 2 runs, with the first run acquiring 148 volumes and the second run acquiring 142 volumes. For the Middle Childhood Cohort waves, the SNAT consisted of 3 runs, with each run acquiring 148 volumes, 142 volumes, and 141 volumes, respectively. The volumes covered the entire brain with a field of view (FOV) of 220 mm in the anterior-posterior (ap) direction, 220 mm in the right-left (rl) direction, and 111.65 mm in the foot-head (fh) direction. The imaging protocol included a repetition time (TR) of 2.2 seconds, an echo time (TE) of 30 ms, a flip angle (FA) of 80°, and a sequential acquisition of 37 slices. The voxel size was 2.75 mm x 2.75 mm x 2.75 mm.
DOI: 10.60641/dj37-w945
title: Highly Sensitive Child Scale (HSC)

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Highly Sensitive Child Scale (HSC) consists of 27 items that measure the sensitivity of the child (e.g. to sounds, scents, social interaction, etc.).
description: Within L-CID, 13 items are used.
DOI: 10.60641/8gx6-ep12
title: Parenting Scale (PS)

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Parenting Scale (PS) is brief measure of parenting behavior and dysfunctional discipline. The PS was originally developed as a rating scale to measure dysfunctional discipline practices in parents of preschool-aged children (18 to 48 months of age) and can be used to identify ‘mistakes’ that may contribute to ineffectual efforts to discipline young children. The PS has also been used with parents of older children (up to 16 years). The PS identifies three stable factors of dysfunctional discipline style as (a) Laxness, (b) Overreactivity, and (c) Verbosity. The Laxness factor (11 items) describes the ways in which parents give in, allow rules to go unenforced, or provide positive consequences for misbehavior. The Overreactivity factor (10 items) reflects mistakes such as displays of anger, meanness, and irritability. The Verbosity factor (7 items) reflects lengthy verbal responses and a reliance on talking even when talking is ineffective.
description: Within the L-CID Covid-19 waves, only 10 items from the Parenting Scale were used. In the child-report version, 11 items were used in wave 6 of the Early Childhood Cohort, and 22 items (11 about each parent) were used in the Covid-19 wave in the Middle Childhood Cohort.
DOI: 10.60641/bzh5-fs42
title: Self-concept Task

description: The Leiden Consortium on Individual Development (L-CID) study was founded by Marinus van IJzendoorn, Eveline Crone, Marian Bakermans-Kranenburg and Rutger Engels in 2013. It was developed as one of four work packages of the overarching Consortium on Individual Development (CID). The L-CID study is a large-scale longitudinal intervention study in which 500 families with same-sex twins are followed over a six year period. L-CID has a cohort-sequential design with two cohorts: an early childhood cohort (ECC), aged 3-4 at wave 1, and a middle childhood cohort (MCC), aged 7-8 at wave 1. Annual assessments consist of alternating lab- or home visits during which behavioral and neurobiological data are collected. The collected data allow, among others, for testing which child characteristics shape the effect of (manipulated) environmental factors. The aim of L-CID is twofold: 1. To investigate the development of social competence and behavioral control in children between 3 and 14 years old; 2. To dissect the reason why not all children are equally responsive to variations in the social environment.
description: The Self-Concept Task aims to measure a child's self-concept. The participants are asked whether both positive and negative traits related to academic performance and social interactions fit them. As a control condition, the participants are asked to categorize certain characteristics as school or friends. The self-evaluations cover various aspects such as friendship, social status, intelligence, work ethic, etc.