cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.6781516
title: Three-dimensional Digital Outcrop Models of the Tullig Sandstone, Western Irish Namurian Basin, Co. Clare, Ireland

description: Tullig Sandstone is part of the Tullig Cyclothem, Western Irish Namurian Basin, Co. Clare, Ireland. The Tullig Sandstone is a prominent sandstone interval that represents an ancient fluvial-deltaic system. Outcrops of the Tullig Sandstone were surveyed by an unmanned aerial vehicle (UAV, DJI Mavic Pro Platinum™). Three-dimensional digital outcrop models were generated from images collected from UAV using Agisoft Metashape™.
description: {"references": ["Wu, C., Nittrouer, J.A., Barefoot, E., Burmeister, K., Reconstructing backwater hydrodynamics from fluvial-deltaic deposits using stratigraphic inversion: an example from the Tullig Sandstone, Western Irish Namurian Basin, Co. Clare, Ireland (in revision, Geological Society of America Bulletin)."]}
DOI: 10.5281/zenodo.6781515
title: Three-dimensional Digital Outcrop Models of the Tullig Sandstone, Western Irish Namurian Basin, Co. Clare, Ireland

description: Tullig Sandstone is part of the Tullig Cyclothem, Western Irish Namurian Basin, Co. Clare, Ireland. The Tullig Sandstone is a prominent sandstone interval that represents an ancient fluvial-deltaic system. Outcrops of the Tullig Sandstone were surveyed by an unmanned aerial vehicle (UAV, DJI Mavic Pro Platinum™). Three-dimensional digital outcrop models were generated from images collected from UAV using Agisoft Metashape™.
description: {"references": ["Wu, C., Nittrouer, J.A., Barefoot, E., Burmeister, K., Reconstructing backwater hydrodynamics from fluvial-deltaic deposits using stratigraphic inversion: an example from the Tullig Sandstone, Western Irish Namurian Basin, Co. Clare, Ireland (in revision, Geological Society of America Bulletin)."]}
DOI: 10.5281/zenodo.6782109
title: Genomic epidemiology of SARS-CoV-2 in Mozambique

description: <strong>Abstract: </strong>Mozambique reported the first case of coronavirus disease 2019 (COVID-19) in March 2020. Since then, the virus has spread to all provinces in the country. Here we set out to perform a retrospective molecular epidemiological analysis of the first 25 months of the epidemic in Mozambique. In total, 1 146 whole genome sequences from Mozambique were phylogenetically analyzed against a globally representative set of references to put the epidemic in the country into context. The domestic pandemic was marked by four successive waves of infection, with the first wave associated with B.1 ancestral lineages, while the Beta, Delta, and Omicron Variants of Concern (VOCs) were responsible for the majority of cases and death during the second, third, and fourth waves. Viral exchanges between Mozambique and the outside world mimicked pandemic waves, with most exchanges occurring during the second, third, and forth waves and most imports and exports being attributed to South Africa. Due to a health system already under constraint and paucity of data in Mozambique, there is a need to continue to strengthen and support genomic surveillance in the country as VOCs and Variants of interests (VOIs) are often reported from the southern African region.
DOI: 10.5281/zenodo.6782108
title: Genomic epidemiology of SARS-CoV-2 in Mozambique

description: <strong>Abstract: </strong>Mozambique reported the first case of coronavirus disease 2019 (COVID-19) in March 2020. Since then, the virus has spread to all provinces in the country. Here we set out to perform a retrospective molecular epidemiological analysis of the first 25 months of the epidemic in Mozambique. In total, 1 146 whole genome sequences from Mozambique were phylogenetically analyzed against a globally representative set of references to put the epidemic in the country into context. The domestic pandemic was marked by four successive waves of infection, with the first wave associated with B.1 ancestral lineages, while the Beta, Delta, and Omicron Variants of Concern (VOCs) were responsible for the majority of cases and death during the second, third, and fourth waves. Viral exchanges between Mozambique and the outside world mimicked pandemic waves, with most exchanges occurring during the second, third, and forth waves and most imports and exports being attributed to South Africa. Due to a health system already under constraint and paucity of data in Mozambique, there is a need to continue to strengthen and support genomic surveillance in the country as VOCs and Variants of interests (VOIs) are often reported from the southern African region.
DOI: 10.6084/m9.figshare.19785412
title: Therapy response of steroid-refractory acute GVHD of the lower intestinal tract

description: Response data to therapy for GVHD
DOI: 10.6084/m9.figshare.19785412.v1
title: Therapy response of steroid-refractory acute GVHD of the lower intestinal tract

description: Response data to therapy for GVHD
DOI: 10.6084/m9.figshare.20191319
title: Online Survey sheet_Graph_Final.xlsx

description: Online collected data for study work
DOI: 10.6084/m9.figshare.20191676
title: Survey Sheet

description: Online collected data
DOI: 10.6084/m9.figshare.20191676.v1
title: Survey Sheet

description: Online collected data
DOI: 10.25442/hku.20177684
title: Supporting data for "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference"

description: Supporting data for "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference" <br> Model updating, which is also a typical application of structural identification, is an essential topic in structural health monitoring because it calibrates the numerical models for response simulation, reliability analysis and damage assessment. A novel active learning Kriging model updating framework is proposed along with three algorithms and application cases. With the active learning approach, those regions which might help improve the current Kriging predictor for model updating are refined and explored automatically. The Kriging model generated by this data-driven process with a limited sample size has satisfactory local accuracy, high efficiency and robust performance for model updating. The framework is also extended to structural identification of time-varying systems, e.g. cable force monitoring. <br> A PhD thesis named "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference" is going to be submitted for examination as well. <br> The dataset includes: 1. Program code of proposed algorithms 2. Numerical and application cases (results) in Chapter 4, 5 and 7 for the proposed algorithms 3. Figures and tables used in the thesis <br> Sub-folders: Folder1: Chapter4_AlTestBeam The datafile of the test example of aluminum test beam shown in Chapter 4 of the thesis Folder2: Chapter5_NumericalExampleOfAContinuousBridge The datafile of the numerical example of a continuous bridge shown in Chapter 5 of the thesis Folder3: Chapter7_CableForceMonitoring The datafile of the application test cases of cable force monitoring in Chapter 7 of the thesis Folder4: Figures&TablesInThesis The figures and tables used in this thesis. <br> <br>
DOI: 10.25442/hku.20177684.v1
title: Supporting data for "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference"

description: Supporting data for "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference" <br> Model updating, which is also a typical application of structural identification, is an essential topic in structural health monitoring because it calibrates the numerical models for response simulation, reliability analysis and damage assessment. A novel active learning Kriging model updating framework is proposed along with three algorithms and application cases. With the active learning approach, those regions which might help improve the current Kriging predictor for model updating are refined and explored automatically. The Kriging model generated by this data-driven process with a limited sample size has satisfactory local accuracy, high efficiency and robust performance for model updating. The framework is also extended to structural identification of time-varying systems, e.g. cable force monitoring. <br> A PhD thesis named "Structural Identification and Model Updating Based on Active Learning Kriging Approach and Bayesian Inference" is going to be submitted for examination as well. <br> The dataset includes: 1. Program code of proposed algorithms 2. Numerical and application cases (results) in Chapter 4, 5 and 7 for the proposed algorithms 3. Figures and tables used in the thesis <br> Sub-folders: Folder1: Chapter4_AlTestBeam The datafile of the test example of aluminum test beam shown in Chapter 4 of the thesis Folder2: Chapter5_NumericalExampleOfAContinuousBridge The datafile of the numerical example of a continuous bridge shown in Chapter 5 of the thesis Folder3: Chapter7_CableForceMonitoring The datafile of the application test cases of cable force monitoring in Chapter 7 of the thesis Folder4: Figures&TablesInThesis The figures and tables used in this thesis. <br> <br>
DOI: 10.25442/hku.20101253
title: Supporting data for “The Functional Role of LncRNA Neat1 in the Kidney”

description: This dataset contains the raw data of the thesis named “The Functional Role of LncRNA Neat1 in the Kidney”.There are 9 sheets in the file. Including clinical part, animal experiment part and cell experiment part, respectively. For clinical part, named AKI Patients, Control subjects, Kidney transplant recipients, in situ of human biopsies; For animal experiment part, named LPS in vivo, and DKD mice; For cell experiment part, named LPS in vitro, Mass spectrometry-IBAQ VALUE, and HG in vitro.
DOI: 10.25442/hku.20101253.v1
title: Supporting data for “The Functional Role of LncRNA Neat1 in the Kidney”

description: This dataset contains the raw data of the thesis named “The Functional Role of LncRNA Neat1 in the Kidney”.There are 9 sheets in the file. Including clinical part, animal experiment part and cell experiment part, respectively. For clinical part, named AKI Patients, Control subjects, Kidney transplant recipients, in situ of human biopsies; For animal experiment part, named LPS in vivo, and DKD mice; For cell experiment part, named LPS in vitro, Mass spectrometry-IBAQ VALUE, and HG in vitro.
DOI: 10.25442/hku.20129759
title: Supporting data for “Development of an explanatory model of gaming disorder and implementation of the short-term strength-based cognitive behavioural therapy intervention for Chinese adolescents with gaming disorder symptoms”.

description: The dataset includes the data for the thesis “Development of an explanatory model of gaming disorder and implementation of the short-term strength-based cognitive behavioural therapy intervention for Chinese adolescents with gaming disorder symptoms”. It includes data from the randomized controlled trial examining the efficacy of short-term strength-based cognitive behavioural therapy intervention versus waitlist control for 77 Chinese adolescents with gaming disorder symptoms. Variables in the dataset include demographic information, assigned groups (intervention group/control group), gaming age, favourite genre of gaming (abbreviation: DG= desktop game; FG= fighting game; FPS= First-person shooter; RTS= Real-time strategy; MOBA= Multiplayer Online Battle Arena; MMORPG= Massively multiplayer online role-playing game; SSG= Sports Simulation Games), time spent on gaming, gaming disorder symptoms, gaming motivation, maladaptive gaming cognition, and comorbidity of gaming disorder including depression and anxiety.
DOI: 10.25442/hku.20129759.v1
title: Supporting data for “Development of an explanatory model of gaming disorder and implementation of the short-term strength-based cognitive behavioural therapy intervention for Chinese adolescents with gaming disorder symptoms”.

description: The dataset includes the data for the thesis “Development of an explanatory model of gaming disorder and implementation of the short-term strength-based cognitive behavioural therapy intervention for Chinese adolescents with gaming disorder symptoms”. It includes data from the randomized controlled trial examining the efficacy of short-term strength-based cognitive behavioural therapy intervention versus waitlist control for 77 Chinese adolescents with gaming disorder symptoms. Variables in the dataset include demographic information, assigned groups (intervention group/control group), gaming age, favourite genre of gaming (abbreviation: DG= desktop game; FG= fighting game; FPS= First-person shooter; RTS= Real-time strategy; MOBA= Multiplayer Online Battle Arena; MMORPG= Massively multiplayer online role-playing game; SSG= Sports Simulation Games), time spent on gaming, gaming disorder symptoms, gaming motivation, maladaptive gaming cognition, and comorbidity of gaming disorder including depression and anxiety.
DOI: 10.5281/zenodo.6597161
title: Dataset for "Quantifying the physical impact of bottom trawling based on high-resolution bathymetric data"

description: Bathymetric point cloud data and ship log data used for the article "Quantifying the physical impact of bottom trawling based on high-resolution bathymetric data" by Mischa Schönke, David Clemens and Peter Feldens (https://doi.org/10.3390/rs14122782)
DOI: 10.5281/zenodo.6482841
title: Dataset for "Quantifying the physical impact of bottom trawling based on high-resolution bathymetric data"

description: Bathymetric point cloud data and ship log data used for the article "Quantifying the physical impact of bottom trawling based on high-resolution bathymetric data" by Mischa Schönke, David Clemens and Peter Feldens (https://doi.org/10.3390/rs14122782)
DOI: 10.5281/zenodo.6782161
title: BrightEyes-TTM Datasets

description: Datasets for Fluorescence Spectroscopy, Fluorescence Correlation Spectroscopy and Fluorescence Lifetime Imaging Microscopy analysis
DOI: 10.5281/zenodo.4912655
title: BrightEyes-TTM Datasets

description: Datasets for Fluorescence Spectroscopy, Fluorescence Correlation Spectroscopy and Fluorescence Lifetime Imaging Microscopy analysis
DOI: 10.5281/zenodo.6774487
title: Preclinical developent of an innovative drug candidate in systemic fungal therapy

description: The dataset documents results of studies in the area of drug development co-founded by the National Centre for Research and Development <strong>(Poland), grant number </strong> <strong>POIR.01.01.01-00-1990/15-00, tytuł: <em>Badania przedkliniczne i kliniczne kandydata na innowacyjny lek w terapii inwazyjnych grzybic układowych.</em></strong> The objective of the project was to conduct preclinical and potantially Phase I clinical studies of a new compound to develop an innovative drug for treatment of invasive systemic mycoses. The compound will be selected from the group of innovative Amphotericin B derivatives developed during the BLIRT project co-funded under the 1.4–4.1 Innovative Economy Operational Programme, which have shown significant improvement of selective toxicity compared to the native drug. Moreover, the solubility of the compounds has been ensured, which enables their bioavailability. The innovative derivatives have characteristics of an ideal antifungal drug – fungicidal activity, low toxicity, aqueous solubility, no induction of resistance, activity against MDR strains, and a broad antifungal<br> spectrum. Their therapeutic efficacy has been preliminarily proven on a model of systemic candidiasis in mice. The project was unsuccesful due to not enough competitive advantages of developed candidates regarding their antifungla efficacy and safety which did not justify further investments of both public and private funds. The dataset contain reports from the conducted studies performed both in house but also in well established CROs. It cover the chemical sythesis of compounds, preparation of their liposomal formulations and preclinical studies in vitro and in vivo performed until the project was stopped, due to not achieving the set development milestone (preclinical stage). It is widely communicatd to the scientific community so that future projects could benefit form the generated know-how.
DOI: 10.5281/zenodo.6774486
title: Preclinical developent of an innovative drug candidate in systemic fungal therapy

description: The dataset documents results of studies in the area of drug development co-founded by the National Centre for Research and Development <strong>(Poland), grant number </strong> <strong>POIR.01.01.01-00-1990/15-00, tytuł: <em>Badania przedkliniczne i kliniczne kandydata na innowacyjny lek w terapii inwazyjnych grzybic układowych.</em></strong> The objective of the project was to conduct preclinical and potantially Phase I clinical studies of a new compound to develop an innovative drug for treatment of invasive systemic mycoses. The compound will be selected from the group of innovative Amphotericin B derivatives developed during the BLIRT project co-funded under the 1.4–4.1 Innovative Economy Operational Programme, which have shown significant improvement of selective toxicity compared to the native drug. Moreover, the solubility of the compounds has been ensured, which enables their bioavailability. The innovative derivatives have characteristics of an ideal antifungal drug – fungicidal activity, low toxicity, aqueous solubility, no induction of resistance, activity against MDR strains, and a broad antifungal<br> spectrum. Their therapeutic efficacy has been preliminarily proven on a model of systemic candidiasis in mice. The project was unsuccesful due to not enough competitive advantages of developed candidates regarding their antifungla efficacy and safety which did not justify further investments of both public and private funds. The dataset contain reports from the conducted studies performed both in house but also in well established CROs. It cover the chemical sythesis of compounds, preparation of their liposomal formulations and preclinical studies in vitro and in vivo performed until the project was stopped, due to not achieving the set development milestone (preclinical stage). It is widely communicatd to the scientific community so that future projects could benefit form the generated know-how.
DOI: 10.6084/m9.figshare.20191982.v1
title: Supplementary Material for: Efficacy of Early Video Capsule Endoscopy for Acute Overt Lower Gastrointestinal Bleeding with Colonic Diverticulosis: A Prospective Observational Study

description: <b><i>Background/Aims:</i></b> Although most patients with presumptive colonic diverticular bleeding (CDB) do not undergo a small bowel investigation in clinical practice, no prospective study supports this management. We evaluated the utility of early small bowel capsule endoscopy (CE) after negative colonoscopy results. <b><i>Methods:</i></b> This prospective study evaluated the diagnostic yield of early small bowel CE (≤3 days from visit) for consecutive patients with acute-onset hematochezia, when colonoscopy found colonic diverticulosis but did not identify the definite bleeding source (<i>n</i> = 51; presumptive CDB). As a matched control for comparing clinical outcomes, presumptive CDB patients without CE (<i>n</i> = 51) were retrospectively extracted. <b><i>Results:</i></b> On CE for the prospective cohort, the rates of total positive findings, P2 findings (high bleeding potential according to the P classification), and blood pooling in the colon were 57%, 12% (ulceration, 8%; angioectasia, 4%), and 24%, respectively. The rates of rebleeding within 30 and 365 days were 16% and 29% in the prospective cohort with CE, respectively, and were not significantly different from those in the retrospective cohort without CE (10% and 25%, respectively). In addition, thromboembolism and mortality within 30 and 365 days were not significantly different between those with and without CE. <b><i>Conclusion:</i></b> Early CE detected a suspected small bowel bleeding source in 12% of acute-onset presumptive CDB patients but did not significantly improve major clinical outcomes. Therefore, routine CE is unnecessary for presumptive CDB patients after colonoscopy (UMIN000026676).
DOI: 10.6084/m9.figshare.20192180
title: Supplementary Material for: Formin like 2 is a potential biomarker of poor prognosis in nasopharyngeal carcinoma

description: Introduction: Nasopharyngeal carcinoma (NPC) is the most common malignant tumor in southern China and Southeast Asia. Although substantial research on NPC has been conducted, the resulting improvement in clinical outcomes remains very disappointing. NPC treatment typically involves radiation therapy and chemotherapy, but the high incidence of metastasis and recurrence in NPC patients result in poor survival. Therefore, identifying potential biomarkers and discovering therapeutic targets are necessary to design tailored treatments based on the genetic profiles of NPC patients. Methods: Correlations of protein immunostaining with clinicopathological features were analyzed by Pearson’s chi-square test. The Kaplan–Meier method with a log-rank test was used to generate survival curves. Multivariate analysis was performed using the Cox proportional hazards model. Results: In this study, we comparatively analyzed cytoskeletal organization and biogenesis (GO:0007010) and tumorigenesis in the NPC transcriptome (GSE12452) and found that formin like 2 (FMNL2) expression was significantly upregulated in NPC tumor tissues. Moreover, high FMNL2 expression was significantly correlated with primary tumor stage (p value=0.001), lymph node status (p value=0.004), cancer stage (p value=0.006), and histological grade (p value=0.040). More importantly, high FMNL2 expression was significantly correlated with poor survival in NPC patients according to univariate analysis and multivariate analysis. Conclusion: This study reveals that FMNL2 may be an important potential biomarker for evaluating the prognosis of NPC patients.
DOI: 10.5281/zenodo.6782247
title: Classical Tibetan Word Embeddings

description: Classical Tibetan word embeddings trained with FastText based on the 2018 version of the BDRC corpus, a segmented version of which is available on Zenodo: Meelen, Marieke, & Roux, Élie. (2020). The Annotated Corpus of Classical Tibetan (ACTib) - Version 2.0 (Segmented & POS-tagged) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3951503 This is the first version trained with default FastText settings (100D) for a pilot study on Chinese-Tibetan crosslinguistic Semantic Textual Similarity: Felbur, Rafal, Marieke Meelen & Paul Vierthaler (2022), 'Crosslinguistic Semantic Textual Similarity of Buddhist Chinese and Classical Tibetan' in <em>Journal of Open Humanities Data</em>. This research was done with generous funding from the Open Philology project. This project (running 2018–2022) is funded by the European Research Council (ERC) under the Horizon 2020 program (Advanced Grant agreement No 741884). It is based at the Leiden University Institute for Area Studies.
DOI: 10.5281/zenodo.6782246
title: Classical Tibetan Word Embeddings

description: Classical Tibetan word embeddings trained with FastText based on the 2018 version of the BDRC corpus, a segmented version of which is available on Zenodo: Meelen, Marieke, & Roux, Élie. (2020). The Annotated Corpus of Classical Tibetan (ACTib) - Version 2.0 (Segmented & POS-tagged) [Data set]. Zenodo. https://doi.org/10.5281/zenodo.3951503 This is the first version trained with default FastText settings (100D) for a pilot study on Chinese-Tibetan crosslinguistic Semantic Textual Similarity: Felbur, Rafal, Marieke Meelen & Paul Vierthaler (2022), 'Crosslinguistic Semantic Textual Similarity of Buddhist Chinese and Classical Tibetan' in <em>Journal of Open Humanities Data</em>. This research was done with generous funding from the Open Philology project. This project (running 2018–2022) is funded by the European Research Council (ERC) under the Horizon 2020 program (Advanced Grant agreement No 741884). It is based at the Leiden University Institute for Area Studies.