cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.wcf2vm
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mozambique",
 "OccurrenceStatus is Present",
 "TaxonKey is Hyphaene compressa H.Wendl."
 ]
}

 The dataset includes 22 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089983-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.akssjt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Halleinosoma styricum Verhoeff, 1929",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089984-240626123714530/datasets/export for details.
DOI: 10.15468/dl.jmy29p
title: Occurrence Download

description: A dataset containing 5374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Meandrina meandrites (Linnaeus, 1758))",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "BasisOfRecord is one of (Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 100",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 5374 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089985-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.war6s4
title: Occurrence Download

description: A dataset containing 715252 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Apis mellifera Linnaeus, 1758",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 715252 records from 1430 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0089958-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.4503092.v2
title: common_reps_production_recognition_data

description: Contains data for manuscript: Fan, JE, Yamins, DLK, Turk-Browne, NB. "Common object representations for visual production and recognition." Cognitive Science.<br><br>
DOI: 10.5281/zenodo.4012298
title: Ontolex-lemon and TIAD versions of Apertium Esperanto-Catalan dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2005--2007, Universitat d'Alacant (Transducens group) (c) 2007, Universitat Pompeu Fabra (c) 2009--, Hèctor Alòs i Font
DOI: 10.5281/zenodo.4012297
title: Ontolex-lemon and TIAD versions of Apertium Esperanto-Catalan dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2005--2007, Universitat d'Alacant (Transducens group) (c) 2007, Universitat Pompeu Fabra (c) 2009--, Hèctor Alòs i Font
DOI: 10.5281/zenodo.4012295
title: Ontolex-lemon and TIAD versions of Apertium English-Kazakh dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2012 Assem Shormakova (c) 2012 Mikel L. Forcada (c) 2012 Ilnar Salimzyanov (c) 2011-2012 Jonathan N. Washington (c) 2011-2012 Francis M. Tyers (c) 2011 Nathan Maxson
DOI: 10.5281/zenodo.4012294
title: Ontolex-lemon and TIAD versions of Apertium English-Kazakh dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2012 Assem Shormakova (c) 2012 Mikel L. Forcada (c) 2012 Ilnar Salimzyanov (c) 2011-2012 Jonathan N. Washington (c) 2011-2012 Francis M. Tyers (c) 2011 Nathan Maxson
DOI: 10.6084/m9.figshare.4502732.v1
title: Molecular signature of anastasis for reversal of apoptosis

description: Data file 1, Raw output from principal component analysis.<br>Data file 2, Output of all genes analysed by Spotfire (K cluster).
DOI: 10.6084/m9.figshare.4502732.v2
title: Molecular signature of anastasis for reversal of apoptosis

description: Data file 1, Raw output from principal component analysis.<br>Data file 2, Output of all genes analysed by Spotfire (K cluster).
DOI: 10.5281/zenodo.4012291
title: Ontolex-lemon and TIAD versions of Apertium English-Galician dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2008, imaxin|software (c) 2007, Generalitat de Catalunya (dades anglés) (c) 2007, Universitat Pompeu Fabra (IULA) (c) 2005, Universitat Politècnica de Catalunya (c) 2005--2007, Universitat d'Alacant (Transducens group)
DOI: 10.5281/zenodo.4012290
title: Ontolex-lemon and TIAD versions of Apertium English-Galician dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2008, imaxin|software (c) 2007, Generalitat de Catalunya (dades anglés) (c) 2007, Universitat Pompeu Fabra (IULA) (c) 2005, Universitat Politècnica de Catalunya (c) 2005--2007, Universitat d'Alacant (Transducens group)
DOI: 10.6084/m9.figshare.4502732.v3
title: Molecular signature of anastasis for reversal of apoptosis

description: Data file 1, Raw output from principal component analysis.<br>Data file 2, Output of all genes analysed by Spotfire (K cluster).
DOI: 10.5281/zenodo.4012280
title: Ontolex-lemon and TIAD versions of Apertium English-Spanish dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2008, Universitat d'Alacant (Transducens group) (c) 2007, Generalitat de Catalunya (dades anglés) (c) 2007, Universitat Pompeu Fabra (IULA) (c) 2005, Universitat Politècnica de Catalunya (c) 2009, Jimmy O'Regan (c) 2009, Paul "greenbreen" Breen
DOI: 10.5281/zenodo.4012279
title: Ontolex-lemon and TIAD versions of Apertium English-Spanish dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: (c) 2008, Universitat d'Alacant (Transducens group) (c) 2007, Generalitat de Catalunya (dades anglés) (c) 2007, Universitat Pompeu Fabra (IULA) (c) 2005, Universitat Politècnica de Catalunya (c) 2009, Jimmy O'Regan (c) 2009, Paul "greenbreen" Breen
DOI: 10.5281/zenodo.4012268
title: Ontolex-lemon and TIAD versions of Apertium English-Catalan dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2017-2019, Marc Riera Irigoyen 2012-2017, Xavi Ivars 2007-2017, Francis M. Tyers 2016, Bror Hultberg 2007-2016, Mikel L. Forcada 2009-2015, Kevin Brubeck Unhammer 2014, Mariola Alaixa Gadea Ferrando 2007-2014, Sergio Ortiz Rojas 2007-2012, Jim O'Regan 2012, Anthony J. Bentley 2012, Hèctor Alòs i Font 2011, Trond Trosterud 2008-2011, Gema Ramírez Sánchez 2007-2011, Mireia Ginestí Rosell 2009, Oscar Senra Gómez 2008, Jacob Nordfalk 2007, Felipe Sánchez Martínez
DOI: 10.5281/zenodo.4012267
title: Ontolex-lemon and TIAD versions of Apertium English-Catalan dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2017-2019, Marc Riera Irigoyen 2012-2017, Xavi Ivars 2007-2017, Francis M. Tyers 2016, Bror Hultberg 2007-2016, Mikel L. Forcada 2009-2015, Kevin Brubeck Unhammer 2014, Mariola Alaixa Gadea Ferrando 2007-2014, Sergio Ortiz Rojas 2007-2012, Jim O'Regan 2012, Anthony J. Bentley 2012, Hèctor Alòs i Font 2011, Trond Trosterud 2008-2011, Gema Ramírez Sánchez 2007-2011, Mireia Ginestí Rosell 2009, Oscar Senra Gómez 2008, Jacob Nordfalk 2007, Felipe Sánchez Martínez
DOI: 10.6084/m9.figshare.4502486
title: Abrolhos Islands image object table

description: Object features calculated from an object-based image analysis of very high resolution aerial photography used for semi-automated detection of white-bellied sea eagle nests. <br>Companion dataset supporting the publication: Andrew, ME and JM Shephard (2017). Semi-automated detection of eagle nests: an application of very high-resolution image data and advanced image analyses to wildlife surveys. Remote Sensing in Ecology and Conservation. 3:66-80. doi:10.1002/rse2.38
DOI: 10.6084/m9.figshare.4502138
title: Earth Analytics: Example Temperature Data for Cleaning: Colorado Floods

description: Week 2 data<br>
DOI: 10.6084/m9.figshare.4502486.v1
title: Abrolhos Islands image object table

description: Object features calculated from an object-based image analysis of very high resolution aerial photography used for semi-automated detection of white-bellied sea eagle nests. <br>Companion dataset supporting the publication: Andrew, ME and JM Shephard (2017). Semi-automated detection of eagle nests: an application of very high-resolution image data and advanced image analyses to wildlife surveys. Remote Sensing in Ecology and Conservation. 3:66-80. doi:10.1002/rse2.38
DOI: 10.6084/m9.figshare.4502138.v1
title: Week 2 earth analytics

description: Week 2 data<br>
DOI: 10.6084/m9.figshare.4499264
title: "Evaluation of a gaze-controlled vision enhancement system for reading in visually impaired people".

description: "Evaluation of a gaze-controlled vision enhancement system for reading in visually impaired people".<br>
DOI: 10.6084/m9.figshare.4502138.v2
title: Week 2 earth analytics

description: Week 2 data<br>
DOI: 10.5281/zenodo.4012255
title: Ontolex-lemon and TIAD versions of Apertium Danish-Norwegian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2009-2019, Kevin Brubeck Unhammer 2010-2016, Trond Trosterud 2013, Jacob Nordfalk 2013, Jonas Fromseier Mortensen 2010-2013, Francis M. Tyers 2013, Filip Petkovski
DOI: 10.6084/m9.figshare.4502138.v3
title: Week 2: Earth Analytics Teaching Data Subset - Time series

description: Week 2 data<br>
DOI: 10.5281/zenodo.4012254
title: Ontolex-lemon and TIAD versions of Apertium Danish-Norwegian dictionary

description: OntoLex-lemon and TSV conversion of Apertium Bidix. For more details, see https://www.aclweb.org/anthology/2020.lrec-1.401/ Authors of the original data: 2009-2019, Kevin Brubeck Unhammer 2010-2016, Trond Trosterud 2013, Jacob Nordfalk 2013, Jonas Fromseier Mortensen 2010-2013, Francis M. Tyers 2013, Filip Petkovski
DOI: 10.6084/m9.figshare.4499135
title: Prenatal central nervous system anomaly with skeletal dysplasia associated with a <i>de novo</i> interstitial tandem triplication of chromosome 14

description: Prenatal central nervous system anomaly with skeletal dysplasia associated with a <i>de novo</i> interstitial tandem triplication of chromosome 14
DOI: 10.6084/m9.figshare.4499135.v1
title: Prenatal central nervous system anomaly with skeletal dysplasia associated with a <i>de novo</i> interstitial tandem triplication of chromosome 14

description: Prenatal central nervous system anomaly with skeletal dysplasia associated with a <i>de novo</i> interstitial tandem triplication of chromosome 14
DOI: 10.6084/m9.figshare.4499117
title: Supplementary Material for: New Description of Telocyte Sheaths in the Bovine Uterine Tube: An Immunohistochemical and Scanning Microscopic Study

description: Telocytes are a special type of interstitial cells characterized by distinctive cellular extensions with alternating thin segments (podomers) and dilations (podoms). Telocytes establish contact with various cells and structures, but their role in the regulation of the function of many cell types is still obscure. The aim of the current study was to investigate the morphology, histochemistry, and immunohistochemistry of telocytes, and their distribution, organization, and morphometric measurements in different layers of the adult bovine uterine tube. Telocytes showed positive immunostaining for CD117, S-100 protein, vimentin, desmin, α-smooth muscle actin, tubulin, laminin, estrogen receptor-α, and progesterone receptor. They were organized in different types of sheaths: subepithelial, inner/outer perimuscular, and intramuscular sheaths. Telocytes were scattered in the lamina propria, in the muscular layer, and the serosa. According to their size, they were grouped into different types of telocytes: small, large, and giant telocytes. Small telocytes were the most common type and located in all layers; large telocytes were observed in the epithelium, lamina propria, and inner/outer perimuscular and intramuscular sheaths, and giant telocytes were found in the external layer of the outer perimuscular sheath. Telocytes were connected by thin and thick telopodes (fenestrated membranes). Fenestrated membranes enabled connections between telocytes along the entire muscular wall of the uterine tube. Telocytes established an extensive biological network of different types of cells and structures, including epithelial, muscular, and mast cells, blood vessels, glomus, and nerve fibers. We hypothesize that telocytes help to organize the functional coordination between different types of cells in the uterine tube.
DOI: 10.6084/m9.figshare.4499114
title: Supplementary Material for: Transcriptional Gene Silencing of the Autism-Associated Long Noncoding RNA MSNP1AS in Human Neural Progenitor Cells

description: The long noncoding RNA <i>MSNP1AS</i> (moesin pseudogene 1, antisense) is a functional element that was previously associated with autism spectrum disorder (ASD) with genome-wide significance. Expression of <i>MSNP1AS</i> was increased 12-fold in the cerebral cortex of individuals with ASD and 22-fold in individuals with a genome-wide significantly associated ASD genetic marker on chromosome 5p14.1. Overexpression of <i>MSNP1AS</i> in human neuronal cells caused decreased expression of moesin protein, which is involved in neuronal process stability. In this study, we hypothesize that <i>MSNP1AS</i> knockdown impacts global transcriptome levels. We transfected the human neural progenitor cell line SK- N-SH with constructs that caused a 50% suppression of <i>MSNP1AS</i> expression. After 24 h, cells were harvested for total RNA isolation. Strand-specific RNA sequencing analysis indicated altered expression of 1,352 genes, including altered expression of 318 genes following correction for multiple comparisons. Expression of the <i>OAS2</i> gene was increased &gt;150-fold, a result that was validated by quantitative PCR. Gene ontology analysis of the 318 genes with altered expression following correction for multiple comparisons indicated that upregulated genes were significantly enriched for genes involved in immune response, and downregulated genes were significantly enriched for genes involved in chromatin remodeling. These data indicate multiple transcriptional and translational functions of <i>MSNP1AS</i> that impact ASD-relevant biological processes. Chromatin remodeling and immune response are biological processes implicated by genes with rare mutations associated with ASD. Our data suggest that the functional elements implicated by association of common genetic variants impact the same biological processes, suggesting a possible shared common molecular pathway of ASD.
DOI: 10.6084/m9.figshare.4499117.v1
title: Supplementary Material for: New Description of Telocyte Sheaths in the Bovine Uterine Tube: An Immunohistochemical and Scanning Microscopic Study

description: Telocytes are a special type of interstitial cells characterized by distinctive cellular extensions with alternating thin segments (podomers) and dilations (podoms). Telocytes establish contact with various cells and structures, but their role in the regulation of the function of many cell types is still obscure. The aim of the current study was to investigate the morphology, histochemistry, and immunohistochemistry of telocytes, and their distribution, organization, and morphometric measurements in different layers of the adult bovine uterine tube. Telocytes showed positive immunostaining for CD117, S-100 protein, vimentin, desmin, α-smooth muscle actin, tubulin, laminin, estrogen receptor-α, and progesterone receptor. They were organized in different types of sheaths: subepithelial, inner/outer perimuscular, and intramuscular sheaths. Telocytes were scattered in the lamina propria, in the muscular layer, and the serosa. According to their size, they were grouped into different types of telocytes: small, large, and giant telocytes. Small telocytes were the most common type and located in all layers; large telocytes were observed in the epithelium, lamina propria, and inner/outer perimuscular and intramuscular sheaths, and giant telocytes were found in the external layer of the outer perimuscular sheath. Telocytes were connected by thin and thick telopodes (fenestrated membranes). Fenestrated membranes enabled connections between telocytes along the entire muscular wall of the uterine tube. Telocytes established an extensive biological network of different types of cells and structures, including epithelial, muscular, and mast cells, blood vessels, glomus, and nerve fibers. We hypothesize that telocytes help to organize the functional coordination between different types of cells in the uterine tube.
DOI: 10.6084/m9.figshare.4499114.v1
title: Supplementary Material for: Transcriptional Gene Silencing of the Autism-Associated Long Noncoding RNA MSNP1AS in Human Neural Progenitor Cells

description: The long noncoding RNA <i>MSNP1AS</i> (moesin pseudogene 1, antisense) is a functional element that was previously associated with autism spectrum disorder (ASD) with genome-wide significance. Expression of <i>MSNP1AS</i> was increased 12-fold in the cerebral cortex of individuals with ASD and 22-fold in individuals with a genome-wide significantly associated ASD genetic marker on chromosome 5p14.1. Overexpression of <i>MSNP1AS</i> in human neuronal cells caused decreased expression of moesin protein, which is involved in neuronal process stability. In this study, we hypothesize that <i>MSNP1AS</i> knockdown impacts global transcriptome levels. We transfected the human neural progenitor cell line SK- N-SH with constructs that caused a 50% suppression of <i>MSNP1AS</i> expression. After 24 h, cells were harvested for total RNA isolation. Strand-specific RNA sequencing analysis indicated altered expression of 1,352 genes, including altered expression of 318 genes following correction for multiple comparisons. Expression of the <i>OAS2</i> gene was increased &gt;150-fold, a result that was validated by quantitative PCR. Gene ontology analysis of the 318 genes with altered expression following correction for multiple comparisons indicated that upregulated genes were significantly enriched for genes involved in immune response, and downregulated genes were significantly enriched for genes involved in chromatin remodeling. These data indicate multiple transcriptional and translational functions of <i>MSNP1AS</i> that impact ASD-relevant biological processes. Chromatin remodeling and immune response are biological processes implicated by genes with rare mutations associated with ASD. Our data suggest that the functional elements implicated by association of common genetic variants impact the same biological processes, suggesting a possible shared common molecular pathway of ASD.
DOI: 10.6084/m9.figshare.4499090
title: Supplementary Material for: Implementation of an Automated Primary Care Acute Kidney Injury Warning System: A Quantitative and Qualitative Review of 2 Years of Experience

description: <b><i>Background:</i></b> Acute kidney injury (AKI) is often detected late, leading to worse clinical outcomes. In 2012, we pioneered an AKI-alerting system for primary care clinicians (PCCs). We retrospectively analysed the alerts and evaluated PCC satisfaction to assess the feasibility of the system. <b><i>Methods:</i></b> The study used a 2-pronged approach. AKI alerts, generated by an algorithm designed by University College London Hospital biochemistry department between June 2012 and June 2014, were analysed to reveal the demographics and outcomes of each patient generating an alert. Second, a survey was sent to all PCCs assessing awareness and satisfaction with the service. Simple statistical methods were applied (mean, median, SD and interquartile range). <b><i>Results:</i></b> One hundred forty-two alerts were generated, of which 101 were genuine. Generally, the patient demographics, AKI stratification and aetiology were in keeping with the inpatient AKI population. Forty-eight percent of cases were referred to the hospital with a median length of stay of 9.9 days. Three-month mortality was 12%. Among PCCs, there was good awareness of the system with most finding it valuable. The key complaints around the system were to do with lack of knowledge of its existence. <b><i>Conclusions:</i></b> Our evaluation has demonstrated that the implementation of AKI alerts in the community is technically feasible, does not result in excessive demand on hospital services, appears to influence PCC behaviour and was perceived overwhelmingly as a useful service by these clinicians. This experience should inform further developments including behavioural interventions (such as clinician alerts) to improve community AKI care.