cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24426670.v1
title: Supplementary Material for: Die Validierung der deutschsprachigen Version des CompACT-8 zur Messung psychischer Flexibilität

description: <b><i>Einleitung:</i></b> Psychische Flexibilität ist ein störungsunabhängiges Konstrukt, welches durch bewusstes, werteorien­tiertes Handeln bei Akzeptanz von unangenehmen Empfindungen und Gefühlen gekennzeichnet ist. Das Konstrukt ist nicht nur zentral in der Akzeptanz und Commitmenttherapie, sondern stellt einen wichtigen Aspekt der mentalen Gesundheit dar. Derzeit eingesetzte Messinstrumente spiegeln den theoretischen Rahmen aufgrund einer einfaktoriellen Struktur nicht hinreichend wider. <b><i>Methoden:</i></b> In dieser Studie soll die deutschsprachige Kurzversion des CompACT, der CompACT-8, validiert werden. 472 Personen aus der Allgemeinbevölkerung nahmen an der Untersuchung teil. Psychometrische Eigenschaften, Reliabilität und Validität wurden bestimmt. <b><i>Ergebnisse:</i></b> Die Ergebnisse zeigen ein reliables und valides Messinstrument. Die dreifaktorielle Struktur konnte bestätigt werden. <b><i>Schlussfolgerung:</i></b> Die deutschsprachige Version des CompACT-8 kann zur Erfassung der psychischen Flexibilität eingesetzt werden.
DOI: 10.6084/m9.figshare.3564642.v1
title: Appendix A. A complete listing of species found in the anthropogenic peatland using the nomenclature of the Instituto de Botánica Darwinion (www.darwin.edu.ar).

description: A complete listing of species found in the anthropogenic peatland using the nomenclature of the Instituto de Botánica Darwinion (www.darwin.edu.ar).
DOI: 10.6084/m9.figshare.6082922.v1
title: Pre-trained cui2vec embeddings

description: Pre-trained embeddings for 108,477 medical concepts
DOI: 10.17632/mnn9gj7s82
title: Investigating the TEFL Research Methodology Course: Syllabi and Document of the Ministry of Science, Research and Technology

description: Syllabi in the higher education system are a key element for achieving educational goals and missions. Developing and adjusting a quality and relevant research methods course according to the current needs is one of the main concerns in the global education systems. Teaching research methods, however, is still one of the most complex and challenging issues. Therefore, this study aimed to investigate the elements of research methods syllabi in graduate programs in English language teaching in public universities of Iran and compare it with the objectives stated in the curriculum document of the Ministry of Science, Research and Technology. In this study, based on purposive sampling, 28 syllabi from 23 public universities in Iran were analyzed and evaluated using MAXQDA software. Using inductive and comparative coding, a framework was adopted that eventually provided a picture of the objectives, content, and assessment and evaluation methods of the research methods courses. Finally, the results were compared with the curriculum document of the Ministry of Science, Research and Technology (MSRT). The comparison results showed that there is a considerable alignment between the objectives and topics of the document of the MSRT and the syllabi examined. The results of this study showed that the document of the Ministry of Science and Research can have significant impacts on how to prepare and develop the syllabi of research methods courses. At the end of this study, some suggestions for revising the document of the MSRT are presented and some suggestions for further research are provided.
DOI: 10.6084/m9.figshare.11922924.v1
title: Extinction risk at increasing levels of strategic protection

description: Data used to generate plots for Figure 1 in Hannah et al. 2020 30% land conservation and climate action reduces tropical extinction risk by more than 50%. Ecography
DOI: 10.6084/m9.figshare.28602344.v1
title: LCGroup_DataSet_15032025_GenHosPsy_fin

description: The aim of the present study was to contribute to filling the gap by establishing a group psychotherapy for long COVID patients and by evaluating its clinical effectiveness in a single-arm setting. We therefore implemented cognitive-behavioral therapy (CBT) and acceptance and commitment therapy (ACT) elements into group psychotherapy and focused on fatigue, insomnia, depression, anxiety, somatic symptoms, psychotraumatology, and quality of life as psychosomatic outcome measures.
DOI: 10.25386/genetics.21350580.v1
title: Supplemental Material for Morales et al., 2024

description: Aerial image orthophotomosaic data collected by unoccupied aerial vehicle (UAV) over Genomes-to-Fields (G2F) hybrid maize experiments at Musgrave Research Farm in Aurora, NY. Dataset includes 4, 7, 6, and 12 aerial imaging events taken over the growing season in 2015, 2017, 2019, and 2020. Orthophotomosaics were produced using Pix4Dmapper and were collected by a MicaSense 5-channel multi-spectral camera capturing the blue, green, red, near infrared, and red edge spectra. The filenames specify the date of the imaging event and the spectra, and the .tif images are GeoTIFF.
DOI: 10.6084/m9.figshare.21878445.v1
title: L1000 dataset for the 9989 chemicals

description: Dataset extracted from the L1000 mRNA profiling assay (LINCS from the NIH), phase 1 (http://identifiers.org/lincs.data/LDG-1227) and phase 2 (https://doi.org/10.1016/j.cell.2017.10.049) and used for the study "Linking chemicals, genes and morphological perturbations to diseases" (Cerisier et al., 2023, Toxicology and Applied Pharmacology). It contains data on 12328 genes for the 9989 compounds mentioned in the study. It contains 178925 rows; one row corresponds to one experimental condition: one compound tested on one cell type at one dose and one time. The column “hash” represents this condition: “compounds=celltype=dose=time=Inf/Sup”. The Inf/Sup information represents the sign of the z-score, If the z-score is negative and below -2.00, the symbol “Inf” is marked. If it is positive and greater than 2.00, the symbol “Sup” is marked. Z-scores between -2.00 and 2.00 are not taken into account, they do not mean any gene disturbance and they do not appear in the dataset. The "genes" column corresponds to the genes (their EntrezIDs), separated by a comma, that are perturbed by the corresponding condition in the "hash" column. The “inchikey” column is basically the inchikey of the molecules concerned by the "hash" column and the “BROAD_ID” column corresponds to the molecule ID provided by the Broad Institute.
DOI: 10.17632/929mtp3fyr
title: Dataset on Water Quality Monitoring Parameters from Various Monitoring Stations in Johor, Malaysia

description: The dataset comprises water quality monitoring data from 39 stations across Johor, Malaysia, collected periodically throughout the year 2020 to capture seasonal variations and long-term trends. The dataset includes 2 (TWO) sheets: one detailing the water quality parameters ("2020") and another providing geographical coordinates and station identifiers ("LATITUDE LONGITUDE").

The "2020" sheet contains the water quality parameters measured at these stations. The parameters include physical measurements such as suspended solids (SS) in mg/l, water temperature (TEMP) in degrees Celsius, conductivity (COND) in milli Siemens per centimeter, and turbidity (TUR) in Nephelometric Turbidity Units. Chemical parameters include concentrations of ammonia nitrogen (NH3-N) in mg/l, chloride (Cl) in mg/l, phosphate (PO4) in mg/l, arsenic (As) in mg/l, and iron (Fe) in mg/l. Additional data points include the frequency of data collection, the date and time of sample collection, and the names of the rivers where the stations are located, such as Sungai Semangar and Sungai Segamat.

The "LATITUDE LONGITUDE" sheet provides essential geographical information for each monitoring station. This includes the state (JOHOR), the basin (e.g., JOHOR, MUAR), latitude and longitude coordinates, and both old (2016) and new station identifiers.
DOI: 10.17632/mjttsjfj2s
title: Data set of Visible-Near Infrared handled and micro- spectrometers – comparison of their accuracy for predicting some sugarcane properties.

description: Chemical and Nir spectra measurements were made on 60 sugarcane samples from different plant parts (leaves, stem or whole aerial part). Chemical parameters (total sugar content - TS, crude protein content - CP, acid detergent fiber - ADF, in vitro organic matter digestibility - IVOMD were determined. In parallel, reflectance spectra were measured using eight spectrometers. Absorbance data was calculated as log10 (1/Reflectance).To illustrate, PLS-R results are showed for TS and CP.
DOI: 10.6084/m9.figshare.3555381.v1
title: Supplement 1. R code and data to run spatial mark–resight model for raccoon camera trap and telemetry data.

description: File List Raccoon_data.R: R list object with following slots $n: matrix with unmarked photo-counts for each trap (rows) and sampling period (columns) $yknown: 3-dimensional array with individual photographic encounter histories (counts) of all tagged and radio-collared individuals (rows) at each camera (columns) and each sampling period (3rd dimension) $X: matrix with X and Y coordinates (columns) of each camera trap (rows), in UTM scaled to km $mi: vector with total number of photos of marked individuals that could be identified to individual level for each sampling period $mall: vector with total number of photos of marked individuals, identified and unidentified, for each sampling period $M: size of the augmented data set $Eff: 3-dimensional array with information on how many days each camera trap (column) was functional during each sampling period (3rd dimension), expanded to hold the same information for each individual in the augmented data set (row), for easier array multiplication in the MCMC algorithm $collar: vector of length M with “TRUE” for individuals with radio-collars and “FALSE” for individuals without collars, tagged or unmarked $locs: list of length sum(collar) with 2-dimensional matrices containing X and Y coordinates of radio telemetry locations for each of the collard individuals SSp.dbf, SSp.shp, SSp.shx: Shapefile with outline of South Core Banks (which comprises the state-space for the raccoon analysis) Rscript_Raccoons.R: R code to load data and run raccoon analysis MCMC_algorithm.txt: R code for MCMC algorithm for spatial mark-resight analysis of raccoon data Description Data files and code are set up to repeat the spatial mark–resight analysis of raccoon camera trapping and telemetry data from South Core Bank, NC, as presented in the Application example in the manuscript.
DOI: 10.6084/m9.figshare.4884389.v2
title: Table S5. Physiological raw data from Common reef-building coral in the Northern Red Sea resistant to elevated temperature and acidification.

description: Coral reefs are currently experiencing substantial ecological impoverishment as a result of anthropogenic stressors and the majority of reefs are facing immediate risk. Increasing ocean surface temperatures induce frequent coral mass bleaching events—the breakdown of the nutritional photo-symbiosis with intracellular algae (genus: <i>Symbiodinium</i>). Here, we report that <i>Stylophora pistillata</i> from a highly diverse reef in the Gulf of Aqaba showed no signs of bleaching despite spending 1.5 months at 1–2°C above their long-term summer maximum (amounting to 11 degree heating weeks) and a seawater pH of 7.8. Instead, their symbiotic dinoflagellates exhibited improved photochemistry, higher pigmentation and a doubling in net oxygen production, leading to a 51% increase in primary productivity. Nanoscale secondary ion mass spectrometry imaging revealed subtle cellular-level shifts in carbon and nitrogen metabolism under elevated temperatures, but overall host and symbiont biomass proxies were not significantly affected. Now living well below their thermal threshold in the Gulf of Aqaba, these corals have been evolutionary selected for heat tolerance during their migration through the warm Southern Red Sea after the last ice age. This may allow them to withstand future warming for a longer period of time, provided that successful environmental conservation measures are enacted across national boundaries in the region.
DOI: 10.6084/m9.figshare.12631403.v1
title: A Multicenter, randomized, open-label, controlled trial to evaluate the efficacy and tolerability of hydroxychloroquine and a retrospective study in adult patients with mild to moderate Coronavirus disease 2019 (COVID-19)

description: Objective In this study, we evaluated the efficacy of hydroxychloroquine (HCQ) against coronavirus disease 2019 (COVID-19) via a randomized controlled trial (RCT) and a retrospective study. Methods Subjects admitted to 11 designated public hospitals in Taiwan between April 1 and May 31, 2020, with COVID-19 diagnosis confirmed by pharyngeal real-time RT-PCR for SARS-CoV-2, were randomized at a 2:1 ratio and stratified by mild or moderate illness. HCQ 400 mg twice for 1 d and HCQ 200 mg twice daily for 6 days were administered. Both study group and controlled group received standard of care (SOC). Pharyngeal swabs and sputum were collected every other day. The proportion and time to negative viral PCR were assessed on day 14. In the retrospective study, medical records were reviewed for patients admitted before March 31, 2020. <b>Results</b> There were 33 and 37 cases in the RCT and retrospective study, respctively. In the RCT, the median times to negative rRT-PCR from randomization to hospital day 14 were 5 days (95% CI; 1–9 days) and 10 days (95% CI; 2–12 days) for the HCQ and SOC groups, respectively (<i>p</i> = 0.40). On day 14, 81.0% (17/21) and 75.0% (9/12) of the subjects in the HCQ and SOC groups, respectively, had undetected virus (<i>p</i> = 0.36). In the retrospective study, 12 (42.9%) in the HCQ group and 5 (55.6%) in the control group had negative rRT-PCR results on hospital day 14 (<i>p</i> = 0.70). <b>Conclusions</b> Neither study demonstrated that HCQ shortened viral shedding in mild to moderate COVID-19 subjects.
DOI: 10.6084/m9.figshare.28912124.v2
title: The People vs Dating Apps - A Design Justice Zine

description: This zine was created as part of the Design Justice module on my Human-Computer Interaction (HCI) Master’s programme. It explores the harms embedded in dating app design through a fictional court case that puts dating apps on trial. From algorithmic bias to insufficient safety measures, the zine critically examines how these platforms have prioritised profit over people.It's not you, it's them.
DOI: 10.6084/m9.figshare.21598761.v1
title: Figure 2 Data

description: <strong>Figure 2. Using in vitro timelapse microscopy to visualize the melanin-based immune response</strong>. (A) Using a developed timelapse microscopy protocol, we were able to record the dynamics of hemolymph melanization in response to C. neoformans from 0 (B) up to 24 hours (C). We can then use particle measurement software to visualize and quantify the melanization reactions over time (D), representative of three biological replicates. This method can be used to gain insight into how different virulence factors, such as laccase, influence the melanization response, where we see that the laccase knockout mutant causes less of a melanization response without much change in time until onset of melanization (E), represented by three biological replicates, and normalized to the wildtype control melanization area at 360 minutes. (F) Overall, the lac1∆ triggers ~40% as much of a melanization immune response compared to the WT (one sample t-test, p = 0.0028, t = 18.78, df =2). (G) Isolated fungal melanins are associated with activation of the insect melanin based immune response, whereas the heat killed acapsular cryptococcal cells are not, as represented by 3-6 biological replicates. (H) Additionally, we can compare the activation of the melanin-based immune response from different fungal species such as C. neoformans and C. albicans, which strongly activates the melanization immune response, represented by 3-6 biological replicates. (B-D, G) are representative images and graphs from three biological replicates. Error bars indicate Standard Deviation. (D, E, G, H) Solid lines indicate mean melanization, and light colored points indicate individual replicate data points. Scale bars represent 50 µm.
DOI: 10.6084/m9.figshare.14608215.v1
title: Gene database of Influenza A virus H1N1

description: This work presents the gene database of Influenza A virus H1N1. Using annotated genome sequence downloaded from Genbank, an in-house MATLAB genome analysis software parsed the contents into a gene database comprising gene name, gene function, and gene sequence. Overall, the presented gene database of H1N1 is fundamental to initiating studies in understanding the origins and pathogenic potential of this virus.
DOI: 10.6084/m9.figshare.25479922.v1
title: Annotation files for the chromosome-level genome assembly of Scirpus×mariqueter(× Bolboschoenoplectus mariqueter)

description: Scirpus × mariqueter (also known as: × Bolboschoenoplectus mariqueter) is a vital engineer species endemic to the eastern estuary of China. The inadequacy of genetic resources hinders further insight into its biological mechanism and ecological value. We assembled the first chromosome-level genome assembly for S. mariqueter
DOI: 10.6084/m9.figshare.4254404.v1
title: Data_N24_10_08.xls

description: <b>How motor representation shapes action experience</b>The question There is a great deal of studies showing that motor processes and representations are involved in sub-personal processing of observed actions. However, so far little research has directly explored whether our own motor system may affect the way we make experience of others’ actions. How and to what extent our motor processing of others’ actions may influence our perceptual experience of them?The experimental paradigm We designed and tested a behavioural model. The protocol consist in two phases: (i) assessing the power of the tool as a good measure for apparent movement judgments (ii) manipulating the observer’s motor system state.<br>
DOI: 10.6084/m9.figshare.11369940.v1
title: Integrating reservoir dynamics, crustal stress, and geophysical observations of the Laguna del Maule magmatic system by FEM models and data assimilation

description: Data for the paper:<br>Integrating reservoir dynamics, crustal stress, and geophysical observations of the Laguna del Maule magmatic system by FEM models and data assimilation<br>Y. Zhan<sup>1</sup>, P. M. Gregg<sup>1</sup>, H. Le Mével<sup>2</sup>, C. A. Miller<sup>3</sup>, and C. Cardona<sup>4</sup><br><sup>1</sup>Department of Geology, University of Illinois - Urbana-Champaign, Urbana, Illinois, USA<sup>2</sup>Department of Terrestrial Magnetism, Carnegie Institution for Science, Washington, District of Columbia, USA<sup>3</sup>GNS Science, Wairakei Research Center, Private Bag 2000, Taupo 3352, New Zealand<sup>4</sup>Observatorio Volcanológico de los Andes del Sur, Servicio Nacional de Geologia y Minería, Avenida Rudecindo Ortega 03850, Temuco, ChileCorresponding author: Yan Zhan (yanzhan3@illinois.edu) <br><br>Instruction:COMSOL_model -&gt; folder for COMSOL modelsStress_Gravity_Results -&gt; folder for Stress, Strain, and Gravity results, including the scripts for plotting Figure 6 ~ 9.<br>
DOI: 10.6084/m9.figshare.16539672.v3
title: Environment and plant traits explain shrub biomass allocation and species composition across ecoregions in North China

description: Data of community and species traits<br>
DOI: 10.17608/k6.auckland.20760364.v1
title: The activity of Aspergillus terreus ICMP 477 against antibiotic-sensitive and resistant strains of E. coli, K. pneumoniae, and S. aureus by zone of inhibition assay

description: To perform zone of inhibition (ZOI) testing, potato dextrose agar (PDA) plates were inoculated with a lawn of either antibiotic-sensitive <em>E. coli</em> (ATCC 25922) or resistant clinical isolates (CTX-M-9, CTX-M-14, CTX-M-15, NDM-1) or antibiotic-resistant <em>K. pneumoniae</em> (ATCC 700603, produces SHV-18). Similarly, Mueller-Hinton agar plates were inoculated with a lawn of either antibiotic-sensitive <em>S. aureus</em> (ATCC 29213) or antibiotic-resistant <em>S. aureus</em> (ATCC 33593). ICMP 477 was obtained from Manaaki Whenua - Landcare Research and grown on PDA plates for 36 days and fungal plugs removed using a 6 mm punch biopsy tool (Amtech Medical, New Zealand). Fungal plugs were placed onto the bacterial lawns, alongside PDA plugs containing no fungus as a control. Plates were incubated inverted at 37°C for 24 h before measuring any zones of inhibition (in mm) produced. A zone of 6 mm = no inhibition. Experiments were performed using three biological replicates with three technical replicates each.
DOI: 10.6084/m9.figshare.24230734.v1
title: Differentially represented ASVs identified with ALDEx2

description: Sets of differentially abundant ASVs identified using ALDEx2 in each experimental variant described in Golebiewski et al. "<b>Colonization of axenic beet by rhizosphere bacteria takes place in discreet phases regardless of bioinculation with next generation bioinoculant</b>". Files are in the tsv (tab separated values) format. Experimental variants are contained in file names in the form of S/R/L.S1/S2.B/C/M.early/late, e.g. S.S1.B.late. S - soil samples, R - roots, L - leaves; S1 - soil 1, S2 - soil 2; B - genotype B (<i>B</i><i>eta vulgaris</i> ssp. <i>vulgaris</i> cv. 'Bravo'), C - genotype C (<i>B. vulgaris</i> ssp. <i>vulgaris</i> cv. 'Casino'), M - genotype M (<i>B. vulgaris</i> ssp. <i>maritima</i>); early - early status, late - late status. Name of the variable defining compared groups is included in filenames after an underscore, e.g. _Inoculation.
DOI: 10.6084/m9.figshare.28156727.v1
title: Detection of liver mitochondrial oxaloacetate by NMR spectroscopy and membrane potential-dependent accumulation

description: Understanding oxaloacetate (OAA) metabolism in liver has been limited because the compound is very difficult to measure by mass spectroscopy and not abundant enough for detection by other methods. Here we describe a novel NMR approach to quantifying OAA in liver mitochondria. Moreover, we provide evidence for membrane potential-dependent OAA accumulation in mitochondria during complex II energized respiration consistent with OAA inhibition of succinate dehydrogenase.
DOI: 10.6084/m9.figshare.23266611.v1
title: Screenshots, phylogenetic statistics and R script from Upper beak depression instead of elevation dominates cranial kinesis in woodpeckers

description: Screenshots used in the analysis of the movement of the upper and lower beak of woodpeckers and insectivore birds. phylogenetic statistic input data and R script