cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc1zzbv4
title: CCDC 1846417: Experimental Crystal Structure Determination

description: Related Article: Charles L. Barnes, Steven P. Kelley, Richard F. Murphy, Rainer Glaser|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zzbw5
title: CCDC 1846418: Experimental Crystal Structure Determination

description: Related Article: Charles L. Barnes, Steven P. Kelley, Richard F. Murphy, Rainer Glaser|2018|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/mc589f85gh.1
title: Data for: Xylem anatomical responses to climate variability in Himalayan birch trees at one of the world’s highest forest limit

description: There are some supplementary figures and table to support the result and discussion of the manuscript.
DOI: 10.17632/xhvg532dsh.1
title: Data for: Changes in small mammal communities throughout the late Quaternary across North American environmental gradients

description: Site genera obtained for this study. Fossil data come from the Neotoma database (Neotomadb.org), references for the modern occurrences are indicated in the supplemental materials. For our analyses we followed the taxonomy of Wilson and Reeder (2005); note however that in this file we have separated the genus "Mictomys" from "Synaptomys" for those researchers who would like to make the distinction.
DOI: 10.6073/pasta/2a817ae17f0621f1634e6a5f848ec059
title: Germination in three R/FR light environments (El Verde)

description: Experiments were conducted in the Tabonuco forest at Luquillo Experimental Forest to determine the germination success of a number of species in different light environments. Species tested included: Byrsonima spicata, Calophyllum brasiliense, Carapa sp., Choven venosa, Guarea guidonia, Manilkara bidentata, Ochroma pyramidale and an unidentified species known locally as Jobo. Seeds were collected as they fell and placed on moist towling in horticulture trays at four sites. Seeds were kept moist and germination was recorded daily for 81 days and three times weekly for an additional 75 days. Light environments included a site exposed to full sun (FS) and sites with 55%, 75% and 80% cover. Instantaneous light measurements were made with a Licor 1800 spectroradiometer to determine the Red (660 nm) to Far-red (730 nm) ratio (R/FR) (Lee, 1987). Analysis of light data indicated that the four sites chosen provided three significantly different R/FR ratio environments, and that germination of some species was affected by the light environment (Smith, H. & Whitelam, G.C. 1990). Three species failed to germinate in any of the four light environments.
Table 1. Red/Far-red ratio & Percent Germination of five species in four sites.
site 
%cover
R/FR
Calophyllum
Manilkara
Ochroma
Carapa
Jobo
1
55
0.53
21%
46%
10%
40%
3%
2
80
0.20
16%
48%
14%
16%
8%
3
FS
1.2
4%
16%
12%
0
0
4
75
0.20
3%
32%
16%
16%
3%
DOI: 10.5285/6d6d46b6-8eb4-5ef1-e053-6c86abc0f765
title: Shelf Sea Biogeochemistry (SSB) benthic epifaunal abundance and individual megafaunal measurements during RRS Discovery cruises DY021, DY030 and DY034.

description: This data set contains epifaunal and megafaunal data collected from Jennings beam trawls conducted in the Celtic Sea. The samples were collected during RRS Discovery cruises DY021, DY030 and DY034 between March-August 2015, as part of the UK Shelf Sea Biogeochemistry research programme (UK-SSB). Three x 2m Jennings beam trawls at 3 each of the 4 main benthic (A,G,H,I) sites were deployed to quantify the community structure and biomass of large epifaunal organisms. Epifaunal measurements are associated to individual trawl events. Individual large taxa measurements were also taken from random samples from the main sites in order to validate and quantify large taxa found using the autosub images and are not associated to individual trawl events. On recovery the fauna were preserved with 10% buffered formaldehyde solution. This residue was returned to the Plymouth Marine Laboratory (PML), UK, where the fauna were extracted, identified to species level where possible, and biomassed (blotted wet weight) to species level. Molluscs and crustaceans were subsequently decalcified by soaking in 10% formic acid solution. Animals were then rinsed in water, blotted and re-weighed. The author does not have any concerns over the quality of the data set and values are consistent with similar data reported in the wider literature. The data were collected as part of the Shelf Sea Biogeochemistry (SSB) research programme as part of the Biogeochemistry, Macronutrient and Carbon Cycling in the benthic layer (BMCC) research programme. SSB was co-funded by the Natural Environment Research Council (NERC) and the Department for Environment, Food and Rural Affairs (Defra). The programme took a holistic approach to the cycling of nutrients and carbon and the controls on primary and secondary production in UK and European shelf seas, to increase understanding of these processes and their role in wider biogeochemical cycles. The British Oceanographic Data Centre (BODC) created the metadata entry and is responsible for holding master copies of the data.
DOI: 10.21227/h25d5x
title: RSSI-Based Indoor Localization with the Internet of Things
DOI: 10.17632/ppjb79pbb9.1
title: Data for: Stable Carbon Analysis of Alluvial Paleosols in the Mixteca Alta, Oaxaca, Mexico

description: This supplementary table provides information about the raw and processed data used in our study as well as some information on methods used to obtain this data.
DOI: 10.21227/h21q18
title: RSSI-Based Indoor Localization with the Internet of Things
DOI: 10.4225/08/5b0f4786c61d0
title: Parkes observations for project P958 semester 2018APRS_01

description: A major breakthrough in fast radio burst (FRB) astronomy was recently made when the repeating FRB 121102 was localized to sub-arcsecond precision. The bursts were found to originate in a bright radio nebula (hypothesized to be a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. These dwarf galaxies are also preferential hosts to superluminous supernova and long gamma-ray bursts, and it has been therefore suggested that the source of the repeating FRB could be a young highly magnetised neutron star. While an understanding of the repeating FRB is emerging, it is still unclear what relationship it has to the rest of the population.   Over the next six months, searches with the Australian Square Kilometre Array Pathfinder (ASKAP) are poised to detect at least 20 additional FRBs, some that will be localized to a few arcseconds.   Here we propose to search this population for repeats.  Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections, will either confirm the presence of additional repeating FRBs or the uniqueness of FRB 121102 amongst the population.
DOI: 10.4225/08/5b0f4800aeefb
title: Parkes observations for project P970 semester 2018APRS_01

description: During the past 6 years, we at Parkes and collaborators at other radio telescopes have been remarkably successful at discovering millisecond pulsars (MSPs) associated with unidentified Fermi-LAT gamma-ray sources. Based on lessons learned, we here propose to carry out targeted searches with the new Ultra-wideband Low (UWL) receiver that will be installed next semester. The ultra-wide frequency coverage will enable us to detect MSPs with steep spectrum and avoid difficulties caused by interstellar scintillation and dispersive and scattering smearing. We propose to revisit highly ranked pulsar candidates that remain unidentified. Such a pilot survey will help us designing future searches of the coming 4FGL gamma-ray source catalog using the UWL. The overall time request is 23 hours on source, or 26 hours including overheads.
DOI: 10.5281/zenodo.1237747
title: Bovine Tuberculosis Model For England And Wales (Botmew) Including Model Description.

description: This model is a research tool, which has been released to allow confirmation of model outputs referred to by a paper published in BMC Veterinary Research https://rdcu.be/5NcV. Outputs are only suitable for evaluating the behaviour of the model. The model is not recommended for any other use. Although the overall distribution of cattle herds represents cattle herds in England and Wales during 2008-2010, all individual herd identities are fictional.

This dataset has been made available under an Open Government License 3.0. The model uses open access code libraries under licenses that are provided in the file "license.txt".

This is the bovine tuberculosis model for England and Wales (BoTMEW), including a model description, and a zip file to download, including executable, parameter and set up files for baseline simulations 2008 - 2022.

The model simulates bovine tuberculosis throughout England and Wales at the resolution of individual farms and infected cattle. However, this version is anonymized below county level, so it can only generate outputs at county resolution.

The model set up includes a complete anonymized listing of cattle movements to match the model for 2008 - 2010.

Full details of the model specification and set up are presented in the document "ModelDescriptionv5.6.pdf", in the most recent version of this upload.

The zip includes actual outputs from 10 replicate simulations of the baseline model setup. It also includes a .ods workbook at its top level, which demonstrates how model fit in 2010 was calculated using those outputs.
description: Funded by the Department for Environment, Food and Rural Affairs (Defra) under project codes SE3122 and SB4500.
The model executable uses code libraries made available for open use under licenses that are listed in the file license.txt.
description: {"references": ["[1] Birch CPD, Goddard A, Tearne O. A new bovine tuberculosis model for England and Wales (BoTMEW) to simulate epidemiology, surveillance and control. BMC Vet Res. 2018;14:273. https://rdcu.be/5NcV"]}
DOI: 10.5281/zenodo.1237748
title: Bovine Tuberculosis Model For England And Wales (Botmew) Including Model Description.

description: This model is a research tool, which has been released to allow confirmation of model outputs referred to by a paper published in BMC Veterinary Research https://rdcu.be/5NcV. Outputs are only suitable for evaluating the behaviour of the model. The model is not recommended for any other use. Although the overall distribution of cattle herds represents cattle herds in England and Wales during 2008-2010, all individual herd identities are fictional.

This dataset has been made available under an Open Government License 3.0. The model uses open access code libraries under licenses that are provided in the file "license.txt".

This is the bovine tuberculosis model for England and Wales (BoTMEW), including a model description, and a zip file to download, including executable, parameter and set up files for baseline simulations 2008 - 2022.

The model simulates bovine tuberculosis throughout England and Wales at the resolution of individual farms and infected cattle. However, this version is anonymized below county level, so it can only generate outputs at county resolution.

The model set up includes a complete anonymized listing of cattle movements to match the model for 2008 - 2010.

Full details of the model specification and set up are presented in the document "ModelDescriptionv5.5.pdf", in the most recent version of this upload.

The zip includes actual outputs from 10 replicate simulations of the baseline model setup. It also includes a .ods workbook at its top level, which demonstrates how model fit in 2010 was calculated using those outputs.
description: Funded by the Department for Environment, Food and Rural Affairs (Defra) under project codes SE3122 and SB4500.
The model executable uses code libraries made available for open use under licenses that are listed in the file license.txt.
description: {"references": ["[1] Birch CPD, Goddard A, Tearne O. A new bovine tuberculosis model for England and Wales (BoTMEW) to simulate epidemiology, surveillance and control. BMC Vet Res. 2018;14:273. https://rdcu.be/5NcV"]}
DOI: 10.4225/08/5b0f48fc68d55
title: Parkes observations for project P456 semester 2018APRS_01

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days at three different wavelengths. With this proposal we aim to maintain our pre-eminent position in the field.

Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.5281/zenodo.1256258
title: Structure And Function Of The Nuclear Pore Complex Cytoplasmic Mrna Export Platform

description: These scripts demonstrate the use of IMP, MODELLER, and PMI in the modeling of the Nup82 complex using DSS/EDC chemical cross-links and electron microscopy (EM) 2D class averages.

First, MODELLER is used to generate initial structures for the individual components in the Nup82 complex. Then, IMP is used to model these components using DSS/EDC crosslinks and the electron microscopy 2D class averages for the entire Nup82 complex.

The modeling protocol will work with a default build of IMP, but for most effective sampling, IMP should be built with MPI so that replica exchange can be used.

<strong>For more information</strong> about how to reproduce this modeling, see the Sali lab website or the README file.
DOI: 10.5281/zenodo.1256259
title: Structure And Function Of The Nuclear Pore Complex Cytoplasmic Mrna Export Platform

description: These scripts demonstrate the use of IMP, MODELLER, and PMI in the modeling of the Nup82 complex using DSS/EDC chemical cross-links and electron microscopy (EM) 2D class averages.

First, MODELLER is used to generate initial structures for the individual components in the Nup82 complex. Then, IMP is used to model these components using DSS/EDC crosslinks and the electron microscopy 2D class averages for the entire Nup82 complex.

The modeling protocol will work with a default build of IMP, but for most effective sampling, IMP should be built with MPI so that replica exchange can be used.

<strong>For more information</strong> about how to reproduce this modeling, see the Sali lab website or the README file.
DOI: 10.5281/zenodo.1256261
title: Qfit-Ligand Reveals Widespread Conformational Heterogeneity Of Drug-Like Molecules In X-Ray Electron Density Maps

description: Benchmark dataset and prospective cases tested for the development of <em>qFit-ligand</em>. Files included: refined single conformer models, un-refined qFit-ligand multiconformer models, and refined qFit-ligand multiconformer models.
DOI: 10.5281/zenodo.1256262
title: Qfit-Ligand Reveals Widespread Conformational Heterogeneity Of Drug-Like Molecules In X-Ray Electron Density Maps

description: Benchmark dataset and prospective cases tested for the development of <em>qFit-ligand</em>. Files included: refined single conformer models, un-refined qFit-ligand multiconformer models, and refined qFit-ligand multiconformer models.
DOI: 10.5517/ccdc.csd.cc1q1621
title: CCDC 1580072: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q1632
title: CCDC 1580073: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q1643
title: CCDC 1580074: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q1654
title: CCDC 1580075: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q1665
title: CCDC 1580076: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q1676
title: CCDC 1580077: Experimental Crystal Structure Determination

description: Related Article: Marissa Ringgold, David Rehe, Peter Hrobárik, Anna Y. Kornienko, Thomas J. Emge, John G. Brennan|2018|Inorg.Chem.|57|7129|doi:10.1021/acs.inorgchem.8b00836
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1q2903
title: CCDC 1581124: Experimental Crystal Structure Determination

description: Related Article: Dachao Hong, Yuto Tsukakoshi, Hiroaki Kotani, Tomoya Ishizuka, Kei Ohkubo, Yoshihito Shiota, Kazunari Yoshizawa, Shunichi Fukuzumi, Takahiko Kojima|2018|Inorg.Chem.|57|7180|doi:10.1021/acs.inorgchem.8b00881
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zgz0f
title: CCDC 1831635: Experimental Crystal Structure Determination

description: Related Article: Xin Fu, He-Yuan Bai, Guo-Dong Zhu, Yan Huang, Shu-Yu Zhang|2018|Org.Lett.|20|3469|doi:10.1021/acs.orglett.8b01183
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zgz1g
title: CCDC 1831636: Experimental Crystal Structure Determination

description: Related Article: Xin Fu, He-Yuan Bai, Guo-Dong Zhu, Yan Huang, Shu-Yu Zhang|2018|Org.Lett.|20|3469|doi:10.1021/acs.orglett.8b01183
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.1256070
title: Darkskies Projects Tasks (Cities At Night)

description: List of available tasks in project DarkSkies hosted in the Crowdcrafting platform (http://www.crowdcrafting.org).

Time frame: 27/04/2014 - 22/12/2015
description: Creative Commons License. Cities at Night by Alejandro Sánchez de
Miguel et al. Atlas of astronaut photos of Earth at night A&G (2014)
is distributed under Creative Commons Non commercial attribution –
Share 4.0 International licence.

https://doi.org/10.1093/astrogeo/atu165

However, if the Cities at Night data are a principal component of a
science paper then co-authorship to PI's should be offered.
description: {"references": ["Cities at Night by Alejandro S\u00e1nchez de Miguel et al. Atlas of astronaut photos of Earth at night A&G (2014)"]}