cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kw668j
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pongo abelii Lesson, 1827"
 ]
}

 The dataset includes 357 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181620-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yqzpc
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coprinellus heterothrix (Kühner) Redhead, Vilgalys & Moncalvo)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 33 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237427-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c637us
title: Occurrence Download

description: A dataset containing 19638040 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 -90,180 -90,180 -30,-180 -30,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 19638040 records from 600 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098674-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2ltfc7
title: CCDC 2407719: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltfd8
title: CCDC 2407720: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltff9
title: CCDC 2407721: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltfgb
title: CCDC 2407722: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltfhc
title: CCDC 2407723: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltfjd
title: CCDC 2407724: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltfkf
title: CCDC 2407725: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ltflg
title: CCDC 2407726: Experimental Crystal Structure Determination

description: Related Article: M. Chodkiewicz, K. Woźniak|2025|IUCrJ|12|74|doi:10.1107/S2052252524011242
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lzk6c
title: CCDC 2412643: Experimental Crystal Structure Determination

description: Related Article: Zhenxiang Liu, Lingli Shao, Shuping Cai, Chaoqun Bian, Haojie Zhu, Xuanang Shen, Hangcheng Ni, Ling Wang, Kaichuan Yang, Hui Mao|2025|Tetrahedron Lett.|163|155573|doi:10.1016/j.tetlet.2025.155573
description: Related Article: LIU zhenxiang|2024|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.2909/5f9eb075-343a-4c68-bfb2-3d09da2c9d17
title: Normalised Difference Vegetation Index 1998-2020 (raster 1 km), global, 10-daily - version 2

description: The Normalised Difference Vegetation Index (NDVI) is a widely used, dimensionless index that is indicative for vegetation density and is defined as NDVI=(NIR-Red)/(NIR+Red) where NIR corresponds to the reflectance in the near infrared bands, and Red to the reflectance in the red band.
DOI: 10.57745/3uglxw
title: Companion dataverse for the article 'TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data'

description: Supplementary data for the article "TAGADA: a scalable pipeline to improve genome annotations with RNA-seq data"
DOI: 10.57745/6ke0uo
title: Resistance, tolerance and competence for Phytophthora cinnamomi

description: The outcome of host-pathogen interactions depends on host defensce and pathogen infection strategies. On the host side, two strategies, resistance and tolerance, have long been identified. They differ in their underlying mechanisms and their effects on pathogens. However, the dynamics of disease transmission also rely on host competence. This trait, defined as the ability of the host to allow pathogen transmission, is rarely studied for pathogen-supporting plants. We assessed the competence for Phytophthora cinnamomi of seedlings of five Quercus and one Castanea species and studied how this trait is correlated with resistance and tolerance. P. cinnamomi is responsible for the chestnut ink disease, alongside with Phytophthora x cambivora which has a much less generalist behaviour. Each seedling was inoculated in mini-rhizotrons by root-mycelium contact and phenotyped for its resistance, tolerance and competence. The amount of necrosis (lesion length), the effect of infection on plant performance (root growth) and the sporangia number were measured. Moreover, we developed a ddPCR assay to quantify the pathogen within host tissues near the inoculation point. This measure was used as a proxy of pathogen load. We were thus be able to assess relate individual host competence reported to the pathogen content measured in the same root fragment. No significant correlation between the phenotyped traits was found at the individual level. However, at the species level, the least competent species (Q. robur, Q. petraea) proved to be the most resistant. These results may have important implications for management of chestnut and oak ecosystems threatened by ink disease.
DOI: 10.57745/27q1cl
title: Sodium CSI MRI for salt mapping in salted fish filets

description: These sodium CSI MRI have been obtained on salted fish filets at several times after salting for salt mapping and diffusion assessment. MRI are virtual transversal slices of the filet. The value in each voxel is the NaCl content value in % (weight). This DataSet contains data corresponding to 16 filets. The tab 000_Filets_description.tab gives filets name, salting process (monolatéral means the salt have been applied on one side of the filet, bilatéral means salt has been applied on both side of the filet) and salting duration (the duration, in hour, between salt is applied and rinse). The files names contain the time in minutes between the beginning of the salting process ad the MRI acquisition. For instance, the file 20220208_Bi_Long_SSStandard_1D_2880min.hdr is the sodiumMRI acquired at 2880 minutes afeter the beginning of the salting process for the filet 20220208_Bi_Long_SSStandard_1D. To open (with the open software ImageJ for instance) MRI the .hdr and the .img files have to be in the same folder. The field of view dimension of the MRI is 19.2*6.4 mm. MRI resolution is 3*2*8 mm. MRI are transversal slice of the filet, the resolution is 2 mm in the salt penetration direction i.e. from one filet side to the other (the smallest dimension on the MRI) and 3mm in the other direction (the largest dimension of the MRI).The virtual slice thickness is 8mm.
DOI: 10.57745/7rfnnp
title: Replication data for the publication "Knowledge coproduction to improve assessments of nature’s contributions to people"

description: This repository contains the auxiliary data to reproduce the results of the publication: Vallet et al., "Knowledge coproduction to improve assessments of nature’s contributions to people" (https://doi.org/10.1111/cobi.14182). The code can be found here: https://gitlab.dsi.universite-paris-saclay.fr/agata/medicinal_plants/medicinal_plants_coproduction. Please see the README document for a description of the files.
DOI: 10.57745/6gc9wa
title: Supplementary material for Colinet et al. 2024 - Functional carbohydrate-active enzymes acquired by horizontal gene transfer from plants in the whitefly Bemisia tabaci

description: Supplementary material for for the manuscript entitled Functional carbohydrate-active enzymes acquired by horizontal gene transfer from plants in the whitefly Bemisia tabaci by Colinet et al. 2024.
DOI: 10.57745/3d4dfw
title: Stream concentrations of micropollutants in the Claduègne, Ardèche

description: Stream concentrations of different organic micropollutants at different times and locations throughout the Claduègne catchment in Ardèche. The data include mainly human and veterinary pharmaceuticals. The analyzed molecules are: Atenolol, Bisoprolol, Caffeine, Carbamazepine, Cetirizine, Diclofenac, Fenbendazole, Irbesartan, Iopromide, Ivermectin, Lidocaine, Metformin, Mebendazole, Nicotinamide, Sulfamethoxazole, Trimethoprim, Telmisartan. The samples were taken in 2019 & 2020. An article describing and interpreting the data will be linked once published.
DOI: 10.57745/5q21ar
title: Rapid meiotic prophase chromosome movements in Arabidopsis thaliana are linked to essential reorganization at the nuclear envelope [Supplementary data]

description: This dataset contains the bioinformatic workflow used to detect T-DNA insertion sites in reporter lines of Arabidopsis thaliana from paired-end Illumina WGS data. It also includes main reports and results files.
DOI: 10.57745/4ethsy
title: Flow intermittence indicators from the reconstruction simulations (1960-2021) in the Velicka DRN (Czechia)

description: Statistical monthly and yearly flow intermittence indicators calculated from the simulated daily state of flow in the Velicka DRN (Czechia). Indicators for the reconstruction period (1960-2021).
DOI: 10.57745/349hd9
title: Data from: Evaluation of delamination propagation speed by means of high speed infrared thermography during low velocity impact tests

description: This dataset comprises a collection of experimental observations using high temporal resolution infrared thermography focused on delamination propagation in cross-ply laminates laminated T700GC/M21 composite materials. The dataset is a supplement to the research article titled "Evaluation of Delamination Propagation Speed Using High-Speed Infrared Thermography in Low-Velocity Impact Tests." It contains the raw apparent temperature images taken at varying impact velocities (0.94 m/s, 1.22 m/s, and 1.73 m/s) and the processed images.
DOI: 10.57745/5vjqhm
title: Camera Underwater images in front of underwater nettings at Lake Guerlédan

description: This dataset contains videos taken from an underwater GoPro Camera, embedded on a Surface Vessel (Blue Boat), moving in front of underwater netting. The dataset also contains aerial view from the vessel embedding the camera, and the GPS-IMU data computed onboard during experiments. Both raw data and adapted ones are present in the datasets as well as the results of our new uNOWA algorithm which aims at detecting underwater netting.
DOI: 10.57745/91ifdi
title: Dataset for the investigation of potential modulated SERS of tolmetin at gold nanoparticle film functionalised polarisable liquid-liquid interfaces

description: This dataset contains the experimental and theoretical data from the manuscript entitled "Potential Modulated Surface-enhanced Raman Spectroscopy of Tolmetin at Gold Nanoparticle Film Functionalised Polarisable Liquid-Liquid Interfaces". The data is split in 5 folders (UV-vis spectroscopy, DLS, Electrochemistry, Raman spectroscopy and Microscopy). Experimental data collected by spectroscopy and electrochemistry are in .csv format, while microscopy images are in the .jpg format.
DOI: 10.57745/7ji3e7
title: Time-Course RNA-Seq analysis of Arabidopsis thaliana shoot meristems during floral transition (accession Tsu-0)

description: Time-course RNA sequencing during floral transition of micro-dissected meristems from the main shoot of the model plant Arabidopsis thaliana. Plants are wild-type of the reference accession Tsu-0, (named T in the datasets), derived from stock 96AV of the Versailles Arabidopsis Stock Center. The time-course is made of four sampling time points corresponding to four developmental stages assessed from temporal and phenotypical cues observed on the plants: Vegetative (V), Late vegetative (L), Transitioning (T) and Floral (F). Five to ten meristems were pooled per time point and the entire time course was replicated three times independantly (see Dieudonné S. et al. for details). cDNA was sequenced using NextSeq500 from Illumina. After classical read quality filtering, each sample yielded on average 43 million sequences. English (2024-06-27)
DOI: 10.57745/4gnvth
title: Façonner l’engagement du public par l’éditorialisation narrative : design et évaluation d’un artefact de médiation numérique patrimoniale.

description: Cette vidéo-démonstration présente un prototype interactif développé dans le cadre de la thèse en recherche-création « Façonner l’engagement du public par l’éditorialisation narrative : Design et évaluation d’un artefact de médiation numérique patrimoniale ». La vidéo montre Entre parcelles et portraits, une anthologie de récits courts sur la paysannerie costaricienne, retraçant l’évolution de cette figure emblématique à travers le dernier siècle. Le prototype met en récit une figure symbolique qui se transforme : du paysan idéalisé, héros national blanc et montagnard, à une multiplicité de visages souvent oubliés — femmes rurales, travailleurs des côtes caraïbes, figures marginales ou stéréotypées. À travers les écrans de l’application, la vidéo montres les fonctionnalités de l’interface : Découvrir des histoires ancrées dans des contextes historiques et culturels précis ; Lire, écouter ou visionner des récits issus de documents patrimoniaux, littéraires et oraux ; Visualiser le décor et l’époque du récit via des cartes, lignes du temps et contenus enrichis ; Naviguer fluidement entre les portraits, les régions et les époques ; Chercher des informations sur des figures ou lieux spécifiques liés à la paysannerie.
DOI: 10.57745/9vmju5
title: Meloidogyne javanica gene predictions

description: Results of EuGene annotation on the M. javanica genome. Predictions of gene models in M. javanica genome were done with the fully automated pipeline EuGene-EP version 1.6.5 (Sallet et al., 2019). EuGene has been configured to integrate similarities with known proteins of Caenorhabditis elegans (PRJNA13758) downloaded from Wormbase ParaSite (Howe et al., 2017) as well as the “nematoda” section of UniProtKB/Swiss-Prot library (UniProt Consortium, 2018), with the prior exclusion of proteins that were similar to those present in RepBase (Bao et al., 2015). We used as transcriptional evidence, transcriptome data for M. incognita, as it is the Meloidogyne species with the most comprehensive expression data available. RNA-seq data from pre-parasitic J2, J2-J3 and adult female stages (Blanc-Mathieu et al., 2017) were assembled de novo using Trinity (Haas et al., 2013) followed by a cleanup that retains for each trinity locus only the transcript that gives the longest ORF. The dataset of M. incognita assembled transcriptome was aligned on the genomes of the four Meloidogyne species using Gmap (Wu and Watanabe, 2005) and except for M. incognita the option "cross-species" was used. Only alignments spanning 30% of the transcript length with at least 97% identity were retained. The EuGene default configuration was edited to set the “preserve” parameter to 1 for all datasets, the “gmap_intron_filter” parameter to 1, the minimum intron length to 35 bp, and to allow the non-canonical donor splice site “GC”. Finally, the Nematode specific Weight Array Method matrices were used to score the splice sites (available at this URL: http://eugene.toulouse.inra.fr/Downloads/WAM_nematodes_20171017.tar.gz).
DOI: 10.57745/3kak3w
title: Carte d'occupation du sol des corridors rivulaires du bassin versant de la Saone 2014

description: Cette carte a été produite dans le cadre de la convention 2010 -- 0190 de l'Agence de l'Eau Rhône Méditerranée et Corse concernant l'optimisation d'une méthode de quantification du rôle des corridors rivulaires sur l'état écologique des cours d'eau. La revue bibliographique préliminaire a mis en évidence l’importance de décrire les activités humaines induisant les pressions sur les cours d’eau. Une façon de rendre compte de ces pressions est de caractériser grâce à une donnée cartographique d’occupation du sol les espaces naturels et ceux liés aux activités humaines. Cette carte fournit une description fine (à haute résolution spatiale) de l'occupation du sol sur la zone d'interface entre milieu terrestre et aquatique, afin de servir comme donnée en entrée pour le calcul d’indicateurs d’occupation du sol caractérisant les pressions diffuses interagissant avec les cours d’eau.
DOI: 10.57745/6fnrwo
title: RPG complété 2022 Région Nouvelle-Aquitaine

description: RPG complété 2022. Complète le RPG campagne 2022 pour les départements de la région Nouvelle-Aquitaine (16, 17, 19, 23, 24, 33, 40, 47, 64, 79, 86, 87). (contient les parcelles agricoles hors RPG). Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2024
DOI: 10.57745/8cc18x
title: Untargeted peptidomic (LC-MS/MS) analysis of the spermosphere of eight common bean genotypes (Phaseolus vulgaris L.)

description: Dataset documenting peptide profile in the spermosphere of germinating common bean (Phaseolus vulgaris L.) seeds. In this study we assessed the composition of seed exuded peptides in the spermosphere and how exuded peptides are influenced by both the location of seed production and the genetic background. One seed lot corresponds to seeds from one genotype produced in one location. Three independent biological replicates were conducted for each seed lot. Thus, 48 samples were analysed, corresponding to three replicates of eight genotypes produced in two locations. Spermosphere collection of germinating seeds involved the imbibition of 30 seeds for each sample at four distinct time intervals: 2, 8, 16, and 24 hours. The collected spermosphere, consisting of the water surrounding germinating seeds, was gathered for each time interval and subsequently pooled and analysed by an untargeted LC-MS/MS peptidomic approach.