cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.n5tb2rbrw
title: Independent domestication events in the blue-cheese fungus Penicillium roqueforti

description: Domestication provides an excellent framework for studying adaptive
 divergence. Using population genomics and phenotypic assays, we
 reconstructed the domestication history of the blue cheese mold
 Penicillium roqueforti. We showed that this fungus was domesticated twice
 independently. The population used in Roquefort originated from an old
 domestication event associated with weak bottlenecks and exhibited traits
 beneficial for pre-industrial cheese production (slower growth in cheese
 and greater spore production on bread, the traditional multiplication
 medium). The other cheese population originated more recently from the
 selection of a single clonal lineage, was associated to all types of blue
 cheese worldwide but Roquefort, and displayed phenotypes more suited for
 industrial cheese production (high lipolytic activity, efficient cheese
 cavity colonization ability and salt tolerance). We detected genomic
 regions affected by recent positive selection and putative horizontal gene
 transfers. This study sheds light on the processes of rapid adaptation and
 raises questions about genetic resource conservation.
DOI: 10.5061/dryad.xsj3tx9b7
title: Genomic footprints of recovery in the European bison

description: After extinction in the wild in the beginning of the twentieth century,
 the European bison has been successfully recovered in two distinct genetic
 lines from only twelve and seven captive founders. We here aimed at
 characterizing the levels of realized inbreeding in these two restored
 lines to provide empirical insights into the genomic footprints left by
 population recovery from a small number of founders. To that end, we
 genotyped 183 European bison born over the last 40 years with the Illumina
 BovineHD beadchip that contained 22,602 informative autosomal SNPs after
 data filtering. We then identified homozygous-by-descent (HBD) segments
 and classified them into different age-related classes relying on a
 model-based approach. As expected, we observed that the strong and recent
 founder effect experienced by the two lines resulted in very high levels
 of recent inbreeding and in the presence of long HBD tracks (up to 120
 Mb). These long HBD tracks were associated with ancestors living
 approximately from 4 to 32 generations in the past suggesting that
 inbreeding accumulated over multiple generations after the bottleneck. The
 contribution to inbreeding of the most recent groups of ancestors were
 however found to be decreasing in both lines. In addition, comparison of
 Lowland individuals born at different time periods showed that the levels
 of inbreeding tended to stabilize, HBD segments being shorter in animals
 born more recently which indicates efficient control of inbreeding.
 Monitoring HBD segment lengths over generations may thus be viewed as a
 valuable genomic diagnostic tool for populations in conservation or
 recovery programs.
description: <strong>BBO3.ped</strong>: ped file with family,
 sample ID, father ID, mother ID, sex, phenotype, genotypes<br> For
 family, we indicated the genotyping batch:<br> WLl = samples
 genotyped in Poland; WLi = samples genotyped at Labogena (from INRA); WLC
 = sample genotyped at GIGA platform (University of Liege,
 Belgium) All samples WLl and WLi are from the Lowland
 line except five sample with ID starting with "k" (lines 138 to
 142), these are from the Lowland-Caucasian line.<br> All samples WLC
 are from the Lowland-Caucasian line.<br> Parents ID and sex are
 unknown and there is no phenotype.
 <strong>BBO3.map</strong>: map file with chromosome,
 marker ID, genetic position (set to 0) and physical position (we used
 Bovine UMD3.1 assembly)
 <strong>BBO3.yob</strong>: file with estimated birth
 year with ID, family ID (WLl, WLi, WLC), year of sampling, age at sampling
 (in months), estimated birth year.<br> The birth year was estimated
 by assuming sampling was one on July 1st (middle of the year)
DOI: 10.5061/dryad.g79cnp5m1
title: Foraging niche shift maintains breeding parameters of a colonial waterbird during range expansion

description: Relating the effects of foraging niche variation to reproductive dynamics
 is critical to understand species response to environmental change. We
 examined foraging niche variations of the slender-billed gull
 (Chroicocephalus genei), a nomadic colonial waterbird species during its
 range expansion along the French Mediterranean coast over a 16 year period
 (1998-2013). We investigated whether range expansion was associated to a
 change in chick diet, breeding success and chicks body condition. We also
 examined whether breeding success and chicks body condition were explained
 by diet and colonial characteristics (number of pairs, laying phenology,
 habitat, and locality). Diet was characterized using dual-stable isotopic
 proxies (δ13C and δ15N) of feather keratin from 331 individuals subsampled
 from a total of 4154 chicks ringed and measured at 18 different colonies.
 δ13C decreased and δ15N increased significantly during range expansion
 suggesting that chicks were fed from preys of increasing trophic level
 found in the less salty habitat colonised by the end of the study period.
 Niche shift occurred without significant change of niche width which did
 not vary among periods, habitats or localities either. Breeding success
 and chick body condition showed no consistent trends over years. Breeding
 success tended to increase with decreasing δ13C at the colony level while
 there was no relationship between stable isotope signatures and chick body
 condition. Overall our results suggest that even if range expansion is
 associated with foraging niche shift towards the colonization of less
 salty and more brackish habitats, the shift had marginal effect on the
 breeding parameters of the Slender-billed gull. Niche width appears as an
 asset of this species, which likely explains its ability to rapidly
 colonize new locations.
description: Long-term monitoring of Slender-billed gull colonies
 Isotopic analyses conducted afterwards thanks to feathers
 collected each year during the ringing (see Material and Methods for
 further details on these analyses)
description: See "Read Me"
DOI: 10.5061/dryad.3tx95x6bt
title: Data from: Recurrent mutualism breakdown events in a legume rhizobia metapopulation

description: Bacterial mutualists generate major fitness benefits for eukaryotes,
 reshaping the host phenotype and its interactions with the environment.
 Yet microbial mutualist populations are predicted to generate mutants that
 defect from providing costly services to hosts while maintaining the
 capacity to exploit host resources. Here, we examined the mutualist
 service of symbiotic nitrogen fixation in a metapopulation of
 root-nodulating Bradyrhizobium spp. that associate with the native legume
 Acmispon strigosus. We quantified mutualism traits of 85 Bradyrhizobium
 isolates gathered from a 700km transect in California spanning ten sampled
 A. strigosus populations. We clonally inoculated each Bradyrhizobium
 isolate onto Acmispon strigosus hosts and quantified nodulation capacity
 and net effects of infection, including host growth and isotopic nitrogen
 concentration. Six Bradyrhizobium isolates from five populations were
 categorized as ineffective because they formed nodules but did not enhance
 host growth via nitrogen fixation. Six additional isolates from three
 populations failed to form root nodules. Phylogenetic reconstruction
 inferred two types of mutualism breakdown, including three to four
 independent losses of effectiveness and five losses of nodulation capacity
 on Acmispon strigosus. The evolutionary and genomic drivers of these
 mutualism breakdown events remain poorly understood.
description: Supplemental figures and tables
DOI: 10.5061/dryad.0vt4b8gvf
title: Imaging of the vulnerable carotid plaque: role of imaging techniques and a research agenda

description: Objectives: Atherothrombosis in the carotid arteries is a main cause of
 ischemic stroke, and may depend on plaque propensity to complicate with
 rupture or erosion, in turn related to qualitative features amenable to in
 vivo imaging. This would provide an opportunity for risk stratification
 and – potentially – local treatment of more “vulnerable” plaques. We here
 review current information on this topic. Methods: We systematically
 reviewed the literature for concepts derived from pathophysiological,
 histopathological and clinical studies on imaging techniques attempting at
 identifying vulnerable carotid lesions. Results: Magnetic resonance
 imaging, computed tomography, ultrasound- and nuclear medicine-based
 techniques, alone or with multimodality approaches, all have a link to
 pathophysiology, and describe different – potentially complementary –
 aspects of lesions prone to complication. There is also, however, a true
 paucity of head-to-head comparisons of such techniques for practical
 implementation of a thorough and cost-effective diagnostic strategy.
 Especially in asymptomatic patients, major international societies leave
 wide margins of indecision in the advice to techniques guiding
 interventions to prevent atherothrombotic stroke. Conclusions: To improve
 practical management of such patients – in addition to patient’s
 vulnerability for systemic reasons – a more precise identification of the
 vulnerable plaque is needed. A better definition of the diagnostic yield
 of each imaging approach in comparison with the others should be pursued
 for a cost-effective translation of the single techniques. Practical
 translation to guide future clinical practice should be based on improved
 knowledge of the specific pathophysiologic correlates and on a comparative
 modality approach, linked to subsequent stroke outcomes.
description: Supplemental materials for Neurology paper
DOI: 10.5061/dryad.dfn2z34wz
title: The first specimen of Deinotherium indicum (Mammalia, Proboscidea, Deinotheriidae) from the late Miocene of Kutch, India

description: Deinotheriidae Bonaparte, 1845 are a family of browsing proboscideans
 which was widespread in the Old World during the Neogene. From Miocene
 deposits in the Indian Subcontinent, deinotheres are known largely from
 dental remains. Both large and small species have been described from the
 region. Previously, only small deinothere species have been identified
 from Kutch in western India. In the fossiliferous Tapar beds in Kutch,
 dental remains have been referred to the small species, Deinotherium
 sindiense Lydekker, 1880, but the specimens are too fragmentary to be
 systematically diagnostic. Here, we describe a large p4 of a deinothere
 from the Tapar beds, and demonstrate that it is morphologically most
 similar to Deinotherium indicum Falconer, 1845, a large species of
 deinothere, thereby confirming the identity of deinotheres at Tapar. D.
 indicum from Tapar is larger than other deinotheres identified from Kutch,
 and is the first occurrence of the species in the region. This new
 specimen helps constrain the age of the Tapar beds to the Tortonian, and
 increases the biogeographic range of this species—hitherto only known from
 two localities in the Subcontinent. This specimen also highlights the
 morphological diversity of South Asian deinothere p4s, and allows us to
 reassess dental apomorphies used to delimit Indian deinothere species.
 Lastly, we argue that by the late Miocene, small deinotheres in Kutch were
 replaced by the large D. indicum.
description: <b>Supplemental Data 1.</b> Table listing all
 specimens with measurements used for comparisons.
DOI: 10.5061/dryad.51c59zw4p
title: Mineralogy and origin of aerosol from an arc basaltic eruption: case study of Tolbachik volcano, Kamchatka

description: Intense emission of volcanic aerosol accompanied the 2012-13 basaltic
 effusive eruption of Tolbachik volcano, Kamchatka. The aerosols sampled
 contain sulfuric acid droplets, glassy particles and 70 mineral phases.
 All aerosol particles may be classified by their origin. The fragmentation
 aerosol includes magma fragments: silicate glass clasts, silicate
 microspheres and small phenocrysts (olivine, pyroxene and magnetite). The
 alteration aerosol comprises particles of quenched silicate melt covered
 with secondary minerals (fluorides, sulfates and oxides/hydroxides of
 rock-forming elements) and fragments of altered rocks composed solely of
 secondary minerals. The condensation aerosol dominated the mass during the
 later stages of the eruption when the explosive activity had ceased, and
 was characterized by the greatest variety of particle compositions. Na-K
 sulfate and Fe(III) oxide made more than 95% of the solid fraction of the
 condensation aerosol. The remaining 5% were represented by native elements
 (Au, Ag-Pt alloy, Pt); sulfides of Fe, Cu, Ag and Re; oxides and
 hydroxides of Al, Fe, Cu, Zn, Mo, W, Te, Ta and Zr; halides of Al, Mg, Na,
 K, Ca, Cd, Pb, Ag and Tl; sulfates of Na, K, Pb, Ca and Ba; the only
 silicate was As-bearing orthoclase. Droplets of H2SO4 formed the liquid
 phase of the condensation aerosol. Some of the aerosols, such as magnetite
 spherules or phosphate-carbonate-fluorite association, likely had a
 nonvolcanic origin (country rocks, wood fly ash). Physical and chemical
 properties of minerals from the volcanic aerosols have an effect on the
 geochemical and environmental behavior of the trace elements emitted by
 volcanoes.
description: <b>Dataset for “Mineralogy
 and origin of aerosol from an arc basaltic eruption: Case study of
 Tolbachik volcano, Kamchatka” by Zelenski et al.</b> <b>Tables S1 to S555 contain raw
 analytical information for aerosol particles studied in this work.
 Analyses were done using Energy-Dispersive Spectrometer and are listed in
 chronological order. All samples are unpolished and coated with carbon -
 thickness nm): 20.0, density (g/cm3): 2.25.</b> <b>High or low total wieght % may
 arise from non-flat (unpolished) surface of a specimen and from analysis
 of adjacent or underlaying substances, including the filter materal, and
 small crystal sizes.</b>
DOI: 10.5061/dryad.rfj6q576v
title: Redescription of the cranial skeleton of the Early Devonian (Emsian) sarcopterygian Durialepis edentatus Otto, 2007 (Dipnomorpha; Porolepiformes)

description: Porolepiforms represent a clade of Devonian stem lungfishes, divided into
 the cosmine-bearing and likely paraphyletic ‘Porolepidae’ (e.g.,
 Porolepis, Heimenia) and the cosmine-free and stratigraphically younger
 Holoptychiidae (e.g., Holoptychius, Glyptolepis, Laccognathus). Data on
 the dermoskeleton are available for both groups, but are more limited for
 ‘porolepids’. Here we present new information on the ‘porolepid’
 Durialepis edentatus from the Emsian (Early Devonian) of Germany based on
 micro-CT scanning. The material comprises an articulated skull of a single
 three-dimensionally preserved individual. The arrangement of the
 cheekbones of Durialepis edentatus recalls that of Porolepis brevis, with
 the occurrence of two subsidiary squamosals. However, the
 parieto-ethmoidal and postparietal shields are roughly equal in size, a
 condition similar to that of Glyptolepis groenlandica and intermediate
 between Porolepis brevis and holoptychiids. A large parasymphysial tooth
 plate displays five tooth rows with three large tusks in the median row,
 another intermediate arrangement between the primitive condition of
 Porolepis sp. (eight rows) and holoptychiids (five or fewer rows).
 Remarkably among porolepiforms, this dental plate is perfectly
 symmetrical. Despite the occurrence of cosmine and rhombic scales, the
 combination of traits displayed in Durialepis deviates from Porolepis in
 several ways, reflecting features shared with holoptychiids to the
 exclusion of other ‘porolepids’.  Durialepis edentatus is thus a
 key addition to our knowledge of ‘porolepid’ anatomy. Because Durialepis
 edentatus preserves much of the cranial and postcranial skeleton in a
 single individual, it represents a suitable early dipnomorph
 representative for inclusion in phylogenetic analyses on sarcopterygians
 and early osteichthyans.
description: The specimen was scanned using a Nikon Metrology HMX ST 225 CT
 scanner at the Natural History Museum, London, with the following
 settings: 205 kV; 160 µa; 6284 projections; 0.5 mm copper filter; with a
 resulting voxel size of 85.7 µm. Data were segmented manually in Mimics
 Innovation Suite V.18.0 (http://biomedical.materialise.com/mimics;
 Materialise, Leuven, Belgium) and resultant PLY files exported into and
 rendered in Blender V.2.77a (http://www.blender.org; Blender Institute,
 Amsterdam, Netherlands). The following data are made
 available: raw TIFF stack (converted in ImageJ from .vol file) and
 associated metadata file; Mimics file containing loaded dataset and
 segmentation; 3D PLY files exported from Mimics.
DOI: 10.5061/dryad.x95x69pdn
title: A laser-microfabricated electrohydrodynamic thruster forcentimeter-scale aerial robots

description: To date, insect scale robots capable of controlled flight have used
 flapping wings for generating lift, but this requires a complex and
 failure-prone mechanism. A simpler alternative is electrohydrodynamic
 (EHD) thrust, which requires no moving mechanical parts. In EHD, corona
 discharge generates a flow of ions in an electric field between two
 electrodes; the high-velocity ions transfer their kinetic energy to
 neutral air molecules through collisions, accelerating the gas and
 creating thrust. We introduce a fabrication process for EHD thruster based
 on 355 nm laser micromachining and our approach allows for greater
 flexibility in materials selection. Our four-thruster device measures 1.8
 * 2.5 cm and is composed of steel emitters and a lightweight
 carbon fiber mesh. The current and thrust characteristics of each
 individual thruster of the quad thruster is determined and agrees with
 Townsend relation. The mass of the quad thruster is 37 mg and the measured
 thrust is greater than its weight (362.6 µN). The robot is able to lift
 off at a voltage of 4.6 kV with a thrust to weight ratio of 1.38.
description: Electrical characterization of the individual thruster in the
 quad thruster was performed first. A high voltage positive DC power supply
 (Bertan 205B-20R) was used to create the potential difference between the
 emitter and collector. The current associated with the discharge was
 determined from the power supply's built-in ammeter. The thruster was
 held directly above the balance with 0.1 mg resolution (Mettler Toledo)
 such that the collector grid was aligned parallel to the scale surface
 using a ceramic tweezer. This arrangement, with the thruster fixed,
 reduces the confounding effect of electrostatic forces acting on the
 aircraft through the tether wire. The distance between the collector grid
 and the weight scale is 21 mm. The scale reading was set to zero and each
 individual thruster was energized to measure the thrust. A piece of Teflon
 was placed between the balance plateau and the collector to electrically
 isolate the balance and to avoid any leakage current. The measured thrust
 is the force exerted by the accelerated ionic wind on the precision scale.
 Each measurement is repeated four times at a given actuation voltage to
 obtain independent statistical samples.
DOI: 10.15468/dl.4sx28v
title: Occurrence Download

description: A dataset containing 382908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Podarcis muralis"
 ]
}

 The dataset includes 382908 records from 4009 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002085-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2y69fx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes microlepis Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((17.9648 28.8496,8.9648 28.8496,8.9648 19.8496,17.9648 19.8496,17.9648 28.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010724-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.29108873
title: Supplementary materials of reseach-in-progress paper: AI-driven BPM: Dehumanization of the Firm?

description: These supplementary materials are used in a pilot study on AI in Business Process Management.
DOI: 10.6084/m9.figshare.30724367
title: Hymenoscyphus corni-maris and H. corni-sanguineae spp. nov. (Helotiaceae) on Cornus mummified fruits in Europe and Asia. Supp. Data

description: Alignment, phylogenetic tree and collection data
DOI: 10.6084/m9.figshare.30724367.v1
title: Hymenoscyphus corni-maris and H. corni-sanguineae spp. nov. (Helotiaceae) on Cornus mummified fruits in Europe and Asia. Supp. Data

description: Alignment, phylogenetic tree and collection data
DOI: 10.15468/dl.3dmp2m
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence, Specimen)",
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anatya guttata"
 ]
}

 The dataset includes 56 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010017-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15161/oar.it/211939
title: Note Illustrative della Carta geologica d'Italia alla scala 1:50.000, F. 493 Taranto
DOI: 10.15468/dl.hhb5qq
title: Occurrence Download

description: A dataset containing 2111524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to 29.085278",
 "DecimalLatitude is less than or equal to 34.085278",
 "DecimalLongitude is greater than or equal to -120.0",
 "DecimalLongitude is less than or equal to -115.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 2111524 records from 357 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009987-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.19977518
title: Example 3 data

description: The dataset includes intraindividual leaf length (mm) data for Betula nana from two natural populations, one in Estonia and the other in the Svalbard Islands.
Columns description:
region: EST = Estonia; SVA = Svalbard;
individual = ID of an individual (from 1 to 10 in each population);
trait.value = leaf lenght (integer in mm)
DOI: 10.6084/m9.figshare.19977518.v1
title: Example 3 data

description: The dataset includes intraindividual leaf length (mm) data for Betula nana from two natural populations, one in Estonia and the other in the Svalbard Islands.
Columns description:
region: EST = Estonia; SVA = Svalbard;
individual = ID of an individual (from 1 to 10 in each population);
trait.value = leaf lenght (integer in mm)
DOI: 10.25318/4610006901-eng
title: Residential property owners by investor status 

description: Data on the number of residential property owners by investor status, ownership type, number of properties owned and total income of individual owners who filed their T1 tax return form.