cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.n2677/1
title: Full dataset

description: Columns are: id (individual), site (location where the snails were released), box (enclosures for cage effects), pop (original population where grandfathers were collected), w (fitness, measured as longevity in a scale ranging from 1 to 12), bm_dig (body mass measured when digestibility was measured), dif (dry-mass digestibility), bm_smr (body mass when standard metabolic rate was recorded), smr (standard metabolic rate), col (color in a gray scale), b_mass (average body mass), g_rate (growth rate)
DOI: 10.5061/dryad.r4q8j/1
title: Growth data

description: Growth data
DOI: 10.5061/dryad.r4q8j/2
title: Reproductive data

description: Reproductive data
DOI: 10.5061/dryad.r4q8j/3
title: Metabolic rate data

description: Metabolic rate
DOI: 10.5061/dryad.r4q8j/4
title: Behavioral data

description: Behavioral data
DOI: 10.5061/dryad.r4q8j/5
title: SNP data

description: SNP data
DOI: 10.5061/dryad.s3v63/1
title: Herders in the sample

description: Covariates collected in the field. Note these data have been anonymised and so not all analysis code will work on this file.
DOI: 10.5061/dryad.s3v63/2
title: Gift game results

description: Results from experimental gift game. ID numbers link to herders.csv
DOI: 10.5061/dryad.s3v63/3
title: Relatedness coefficients

description: Matrix containing coefficients of relatedness for each dyad in the sample.
DOI: 10.5061/dryad.16pj5/10
title: FastqToTBTPlugin

description: FastqToTBTPlugin XML file
DOI: 10.5061/dryad.16pj5/11
title: GBSHapMapFiltersPlugin.chr1.snpmerged

description: GBSHapMapFiltersPlugin.chr1.snpmerged XML file
DOI: 10.5061/dryad.16pj5/12
title: MergeDuplicateSNP_vcf_Plugin.chr1

description: MergeDuplicateSNP_vcf_Plugin.chr1 XML file
DOI: 10.5061/dryad.16pj5/13
title: MergeMultipleTagCountPlugin

description: MergeMultipleTagCountPlugin XML file
DOI: 10.5061/dryad.16pj5/14
title: MergeDuplicateSNPsPlugin.chr1

description: MergeDuplicateSNPsPlugin.chr1 XML file
DOI: 10.5061/dryad.16pj5/15
title: MergeTagsByTaxaFilesPlugin

description: MergeTagsByTaxaFilesPlugin XML file
DOI: 10.5061/dryad.16pj5/16
title: TagCountToFastqPlugin

description: TagCountToFastqPlugin XML file
DOI: 10.5061/dryad.16pj5/17
title: TagsToSNPByAlignmentPlugin.chr1

description: TagsToSNPByAlignmentPlugin.chr1 XML file
DOI: 10.5061/dryad.16pj5/18
title: tbt2vcfPlugin.chr1

description: tbt2vcfPlugin.chr1 XML file
DOI: 10.5061/dryad.566h9/22
title: Bh4
DOI: 10.5061/dryad.566h9/23
title: DTH7
DOI: 10.5061/dryad.566h9/24
title: DTH8
DOI: 10.5061/dryad.566h9/25
title: Hd1
DOI: 10.5061/dryad.566h9/26
title: Rc
DOI: 10.5061/dryad.566h9/27
title: Hd3a
DOI: 10.5061/dryad.5k927/10
title: TABLE_3_PERCENTAGE_SUCCESFUL_MULTIPLE_PREY_DETECTION

description: Raw data of successful prey detection for E. stipulatus and P. persimilis depending on the order of the prey species offered in the multiple prey assay from Table 3.
DOI: 10.5061/dryad.5k927/11
title: TABLE_4_TIME_INVESTED_AND_SUCCESFUL_ENCOUNTER_OF_E_STIPULATUS

description: Raw data of the time invested and succesful encounters of Euseius stipulatus for the multiple prey assay from Table 4.
DOI: 10.5061/dryad.5k927/12
title: TABLE_4_TIME_INVESTED_AND_SUCCESFUL_ENCOUNTER_OF_P_PERSIMILIS

description: Raw data of the time invested and succesful encounters of Phytoseiulus persimilis for the multiple prey assay from Table 4.
DOI: 10.5061/dryad.5k927/13
title: TABLE_5_CORRECTED_PREDATION_VALUES

description: Summary of the prey detection data in field samples for three phytoseiid predator species: Euseius stipulatus, Phytoseiulus persimilis and Neoseiulus californicus for determining the corrected predation values of Table 5.
DOI: 10.5061/dryad.5k927/7
title: Fig_S1_AMPLIFICATION_MULTIPLEX_PCR_ALL_SPECIES

description: Peak Scaner lecture of the target species included in this study and represented in Figure S1
DOI: 10.5061/dryad.5k927/8
title: PCR_SENSITIVITY

description: Peak Scaner lecture of the serial dilutions of the target tetranychid preys Tetranychus urticae and Panonychus citri. Data only include the number of dilutions with detection for each species.
DOI: 10.5061/dryad.5k927/9
title: SENSITIVITY_OF_DNA_TEMPLATE_MIX

description: Peak Scaner lecture of the multiplex PCR amplification reaction using a DNA template mix with all the target species included in this study.
DOI: 10.5061/dryad.6k2qm/1
title: Microsatellite dataset

description: This file contains genotypes of all individuals used in the study at 16 microsatellite loci and information on the sampling locations.
DOI: 10.5061/dryad.6k2qm/3
title: mtDNA Sequence alignment

description: This file contains the mtDNA sequence alignment of 211 haplotypes used in reconstructing the phylogenetic tree.
DOI: 10.5061/dryad.6vb73/3
title: Table A3. Gonadal development of workers with initial gonadal development

description: Gonadal development of the worker that had the most advanced development in each group under three experimental treatments where workers had initial gonadal development
DOI: 10.5061/dryad.6vb73/4
title: Number of queens and colony size in the eusocial shrimps Synalpheus elizabethae in Bocas del Toro, Panama

description: Data include 72 colonies collected from Bocas del Toro, Panama between 2007 and 2013
DOI: 10.5061/dryad.71dq2/1
title: Character Data for Leslie et al.

description: This file contains character scorings in a more readily usable txt format. For information on data sources, please see the Data Table and Sources file also included here.
DOI: 10.5061/dryad.744fb/1
title: Questionnaire

description: Results of questionnaire on meadow status
DOI: 10.5061/dryad.744fb/2
title: Genotype data set with threat categories

description: Summary of genetic diversity and disturbances for each meadow.
DOI: 10.5061/dryad.744fb/3
title: Individual heterozygosity

description: Individual heterozygosity and residuals of relevant threats.
DOI: 10.5061/dryad.75n5q/3
title: Z.2pops.4.arlequin

description: This is a text file that is in Arlequin input format.  It contains Z chromosome data for C. urophasianus and C. minimus.
DOI: 10.5061/dryad.75n5q/4
title: Z.3pops.4.arlequin

description: This is a text file in Arlequin input format and represents Z chromosome data for three groups (2 C. urophasianus - one (GRSG) is the southern part of the range and the other (BiState) is the diverged population on the border between California and Nevada).  The third group is Gunnison Sage-grouse.
DOI: 10.5061/dryad.75n5q/5
title: mean FST by chromosome

description: This file is a text file that shows the mean FST values between C. urophasianus and C. minimus for each chromosome (1 - 10) as well as the Z chromosome.
DOI: 10.5061/dryad.8pv40/1
title: Prairie_Forest_Precip_Gradient_DRYAD

description: This file includes all original data related to the analysis published by the American Journal of Botany including: 1) The original radomized block design, 2) the rearranged split-plot block design, 3) the population code as it appears in the manuscript, 4) a genotype number, 5) the watering treatment (D=dry; W = wet), 6) Biome (P=prairie, F=forest), 7) latitude and longitude of wild population, 8) flow cytometry peaks and pg DNA calculation, 9) original rhizome weight at planting, and for each year 2007-2010  when measured, 10) date of first flower, 11) leaf number, 12) height, 13) basal stem diameter, 14) abaxial and adaxial stomatal counts and their ratio, 15) clone number, 16) branch number 17) dried biomass.  Herbivory (yes/no) for 2008 is also included.
DOI: 10.5061/dryad.b6gj8/13
title: Supporting Figure S7

description: Supporting Figure S7: Frequencies of the three possible unrooted tree topologies (panel A) and the six possible internal species pairings (panel B) for all chromosomes.
DOI: 10.5061/dryad.b6gj8/14
title: Data Files

description: Contains input files for different species tree analyses and phylogenetic trees.
DOI: 10.5061/dryad.d87v7/1
title: R script for calculating D

description: calculates Fritz & Purvis's D for successional habitat specialization at each site and for the entire phylogeny used in this study
DOI: 10.5061/dryad.d87v7/2
title: R script for brunch/crunch analysis

description: calculates brunch/crunch as appropriate for functional trait data with respect to successional habitat specialization
DOI: 10.5061/dryad.d87v7/4
title: Phylogeny

description: This file contains a supertree of all the taxa at all sites that were used in the analysis presented in Letcher et al. 2015; site-specific phylogenies can be generated by taking subsets of this tree.
DOI: 10.5061/dryad.d8h27/1
title: Available data

description: Assembled EST-SSR sequences, single-copy gene sequences and 3,126 gene sequences with Ka value, Ks value and Ka/Ks ratio. The files (alignment file,tree file,script file) for PAML estimates were included in the datasets.
DOI: 10.5061/dryad.g50b0/1
title: microsatellite data of Ficus pumila and Wiebesia pumilae
DOI: 10.5061/dryad.g6311/2
title: Infinium_1.5Mb

description: Analyses-ready data in the PHYLIP format for Figs 4 & 5 (a pre-processed file that contains 19,548 accessions and concatenated sequence alignments within 1.5 Mb region).
DOI: 10.5061/dryad.g6311/3
title: 10SNPs

description: Analyses-ready data for Fig. 6 (a pre-processed file that contains 15,996 accessions and concatenated 10 nucleotide sequence alignments).
DOI: 10.5061/dryad.g6311/4
title: Newick

description: Newick format tree files for Figs 3c & 6. S1.nwk: Fig. 3c.S2.nwk: Fig. 3c.S3.nwk: Fig. 3c.15996.nwk: Fig. 6.
DOI: 10.5061/dryad.g6311/5
title: Perl scripts

description: Perl scripts used in this study.
DOI: 10.5061/dryad.g6311/6
title: Rhg1_CNV.sh

description: A shell script to generate SAM/BAM/mpileup files.
DOI: 10.5061/dryad.g6311/7
title: subpopulation

description: Analyses-ready data for Fig. 5. The list of accessions for each subpopulation.
DOI: 10.5061/dryad.g6311/8
title: VCF files

description: VCF outputs from VarScan
DOI: 10.5061/dryad.gc981/1
title: OTU table

description: Raw 97% OTU table showing the number of sequences clustered into each UCLUST OTU. Each OTU is identified according to a unique OTU number, followed by its GAST taxonomy. Metadata on salinity treatment, total raw sequence count, and sample ID is also given.
DOI: 10.5061/dryad.gr40r/1
title: Raccoon contact matrices

description: Weekly matrices containing durations of contacts in seconds between raccoon dyads. (Breeding season = weeks 24 to 39)
DOI: 10.5061/dryad.k5tg1/1
title: Data Newman et al

description: Sheet 1: Taxa Richness: species richness of each taxa in each plot (row), with 7 predictor variables. Sheet 2: Coral Species: 6 predictor variables, with presence (1) absence (0) of each coral species modelled. Sheet 3: Fish Species: 7 predictor variables, with presence/absence of each fish species modelled.
DOI: 10.5061/dryad.n9r31/1
title: Data from: The wake of hovering flight in bats

description: Induced power, flap efficiency, induced power factor, make angle and kinematic data of hovering bats
DOI: 10.5061/dryad.nb571/1
title: Oviposition_timing_and_site

description: Excel file with two sheets, one for oviposition timing, one for oviposition site.
DOI: 10.5061/dryad.04d0d/1
title: Genome-wide cytosine methylation estimates of 200 plants of Helleborus foetidus obtained by HPLC and Methylation Scoring of MSAP data

description: Genome-wide cytosine methylation estimates in young leaves of 200 plants of Helleborus foetidus obtained using HPLC and the percentage of cytosine methylation in CCGG sites obtained by Methylation Scoring of MSAP data. Methylation scoring (MS50) was calculated as the percentage of MSAP loci scored as methylated (condition II + III).
DOI: 10.5061/dryad.04m3v/1
title: G_pallida

description: Genotypic data (Genepop format) for the species Globodera pallida
DOI: 10.5061/dryad.04m3v/2
title: G_tabacum

description: Genotypic data (Genepop format) for the species Globodera tabacum
DOI: 10.5061/dryad.04m3v/3
title: H_schachtii

description: Genotypic data (Genepop format) for the species Heterodera schachtii
DOI: 10.5061/dryad.1632h/1
title: FunRaw_replace

description: These 44 subjects were randomly selected from 175 participants. Therefore, subject NO. is discrete.In the folder named FunRaw, the T2-weighted images of subjects were included and the data were collected during the resting state
DOI: 10.5061/dryad.1632h/2
title: T1Img_replace

description: These 44 subjects were randomly selected from 175 participants. Therefore, subject NO. is discrete.In the folder named T1Img, the T1-weighted images of subjects were included.
DOI: 10.5061/dryad.1632h/3
title: behavior_replace

description: These 44 subjects were randomly selected from 175 participants. Therefore, subject NO. is discrete.In the folder named behavior, the behavioral data of subjects were included.
DOI: 10.5061/dryad.16pj5/19
title: UExportTagPairPlugin

description: UExportTagPairPlugin XML file
DOI: 10.5061/dryad.16pj5/20
title: UTagCountToTagPairPlugin

description: UTagCountToTagPairPlugin XML file
DOI: 10.5061/dryad.3vg33/1
title: Application of wMelPop Wolbachia strain to crash local populations of Aedes aegypti

description: Studies of the survival of Aedes aegypti eggs infected with the Wolbachia strain wMelPop "popcorn"
DOI: 10.5061/dryad.56360.2
title: Data from: Intraspecific niche variation drives abundance-occupancy relationships in freshwater fish communities
DOI: 10.5061/dryad.5b568/1
title: cary_rooted_bootstrap_at-least-60-taxa.tar

description: Homolog trees for Caryophyllales. Names can be found in the cary_name_dict.txt file.
DOI: 10.5061/dryad.5b568/2
title: HYM_bootstrap_rr_extract_clades.tar

description: Hymenoptera homolog files. The names for the taxa can be found in the hym_name_dict.txt file.
DOI: 10.5061/dryad.6537t/1
title: Table S1

description: Patient information
DOI: 10.5061/dryad.71dq2/2
title: Data Table and Sources

description: Information in this table can also be found in the online Supporting Materials associated with the paper. It lists the data and data sources for all analyzed species, as well as which conifer species were not included due to missing data.
DOI: 10.5061/dryad.71rn0/1
title: Sequence data sets used in Aguiar et al. 2015

description: Sequence data sets used in Aguiar et al. 2015:1- SSK1 like genes in flowering plants: SSK1 genes(s) have been described only in species having RNase based GSI. Therefore, presence/absence of this gene(s) has been reported as a diagnosis marker for the presence/absence of RNase based GSI (see references in Aguiar et al. 2015). The protein encoded by SSK1 has an unique C-terminus, composed of 5 - 9 amino acid residues, following the conventional "WAFE" motif. In Rosaceae, this amino acid tail shows the conserved sequence “GVDED”. In Solanaceae and Plantaginaceae this motif is not so well conserved but a D residue is always found at the last position of the motif. When using these features and the NCBI flowering plant species database, we retrieved 21 sequences from Solanaceae (three), Plantaginaceae (one), Rosaceae (eight), Fabaceae (five), Malvaceae (one), Rutaceae (one), Euphorbiaceae (one)  and Salicaceae (one) species. The two genes from Cytisus striatus were obtained from a style with stigma transcriptome. Oryza sativa [GenBank:AP003824] and Citrus maxima [GenBank:FJ851401] genes that encode proteins not presenting the C-terminus amino acid motif following the conventional "WAFE" motif are here included to root the phylogenetic tree shown in Figure 1 in Aguiar et al. 2015.2- Fabaceae S-RNase lineage genes: Fabaceae S-RNase lineage genes and Prunus, Pyrinae, Solanaceae and Plantaginaceae S-RNases (Figure 2 and Figure 6A in Aguiar et al. 2015): Sequences used to determine the phylogenetic relationship of M. truncatula, G. max, L. angustifolius, L. corniculatus, L. japonicus, T. pratense, P. sativum, C. cajan, C. tetragonoloba, C. arietinum,and C. striatus S-RNase lineage genes and the Prunus, Pyrinae, Solanaceae and Plantaginaceae S-RNases.3- CsRNase3: C. striatus CsRNase3 gene and Prunus, Pyrinae, Solanaceae and Plantaginaceae S-RNases (Figure 6 in Aguiar et al. 2015)4- F-box genes: F-box SFB -SFBB- and SLFL- like genes surrounding the C. arietinum Ca4, M. truncatula Mt3, Mt17, Mt18, and Mt20 S-RNase like genes, and S-pollen genes from Prunus, Malus, Solanaceae and Plantaginaceae, and Prunus S-like genes (genes not involved in GSI specificity; see Aguiar et al. 2015 Figure 5). A. thaliana F-box/kelch-repeat
DOI: 10.5061/dryad.72j0n/1
title: stable isotope data for deposit-feeders

description: Rawdata for each species, station and year: the d15N and d13C data (d13C is corrected for CN ratio according to Post et al. 2007 Oecologia) as well as CN ratio
DOI: 10.5061/dryad.7vf45/1
title: R code for Maiasaura growth curves

description: A modified version of the R script from Cooper et al. 2008 used to construct Maiasaura growth curves.
DOI: 10.5061/dryad.7vf45/2
title: Supplementary Figures and Tables

description: Supplementary Figures 1-3 and Supplementary Tables 1-7.
DOI: 10.5061/dryad.8fp98/1
title: Data from: Variation in the impact of non-native seaweeds along gradients of habitat degradation: a meta-analysis and an experimental test

description: Biological invasions are acknowledged among the main drivers of global changes in biodiversity. Despite compelling evidence of species interactions being strongly regulated by environmental conditions, there is a dearth of studies investigating how the effects of non-native species vary among areas exposed to different anthropogenic pressures. Focusing on marine macroalgae, we performed a meta-analysis to test whether and how the direction and magnitude of their effects on resident communities and species varies in relation to cumulative anthropogenic impact levels. Therelationship between human impact levels and non-native species impact intensity emerged only for a reduced subset of the response variables examined. Yet, there was a trend for the effects of non-native species on community biomass and abundance and on species abundance to becomeless negative at heavily impacted sites. By contrast, the magnitude of negative effects of seaweed on community evenness tended to increase with human impact levels. The hypothesis of decreasing severity of invader’ impacts along a gradient of habitat degradation was also tested experimentally at a regional scale by comparing the effects of the removal of non-native alga, Caulerpa cylindracea, on resident assemblages among rocky reefs exposed to different anthropogenic pressures. Assemblages at urban and pristine site did not differ when invaded, but did so when C. cylindracea was removed. Our results suggest that, despite the generally weak relationship between human impacts levels and non-native species impacts, more negative impacts can be expected in less stressful environments (i.e., less degraded or pristine sites), where competitive interactions are presumably the driving force structuring resident communities. Implementing strategies for controlling the establishment of non-native seaweeds should be, thus, considered a priority for preserving biodiversity in relatively pristine areas. On the other hand, control of invaders at degraded sites could be warranted to lessen their role as propagule sources.                                                          Study ID corresponds to the article identification number reported in Appendix 2   Region: study region; WesMed = Western Mediterranean Sea, GNS = Great North Sea              Type: trophic level of target organismHabitat: IRB = intertidal rocky bottom, ISB = intertidal soft bottom, MATTE = Posidonia oceanica dead matte, OYSTBED = oyster beds, SRB = subtidal rocky bottom, SSB =subtidal soft bottomInvader: non-native macroalgaeData source: Ninv = non invaded, Inv = invadedHalpern_filtered_5_5: values of Halpern index averaged with a 5x5 square kernel around study sites
DOI: 10.5061/dryad.92tt0/1
title: Simcoal 2 and ABCsampler input files for the three models

description: This file contains the .est and .par input files used for simulating the genetic datasets used in this article. There are three different couples of .est/.par files, each of them being associated to one of the three models presented in the article (i.e. dendritic, lattice and circular models). The event at 40,000 generations before present (i.e. all genes in the network were send back to an unique deme at this date, considering a backwards in time timeframe), was used to uniformize coalescence times across simulations and models.
DOI: 10.5061/dryad.b6gj8/15
title: Scripts

description: Contains all the scripts used for data analysis in the paper.
DOI: 10.5061/dryad.b8d6m/1
title: Bayesian inference tree with full gene partition scheme
DOI: 10.5061/dryad.b8d6m/2
title: Bayesian inference tree with codon partition scheme
DOI: 10.5061/dryad.b8d6m/3
title: Bayesian inference tree with Gblocks and codon partition scheme
DOI: 10.5061/dryad.b8d6m/4
title: Bayesian inference tree with Gblocks and full gene partition scheme
DOI: 10.5061/dryad.b8d6m/5
title: Maximum Likelihood tree with codon partition scheme
DOI: 10.5061/dryad.bd6h3/1
title: Diplodus_vulgaris_Dryad

description: Microsatellites' alleles
DOI: 10.5061/dryad.d87v7/5
title: Species abundances

description: Contains the number of individuals in old-growth and secondary forest for each species at each site.
DOI: 10.5061/dryad.d87v7/6
title: Functional trait data

description: Functional trait data
DOI: 10.5061/dryad.d87v7/7
title: Site locations

description: Latitude and longitude of sites used in this study.
DOI: 10.5061/dryad.f6rr4/1
title: selected breeding population
DOI: 10.5061/dryad.gc981/3
title: MIMARKS sequence metadata

description: MIMARKS-formatted metadata for sequences generated as part of this study. All sequences are available in NCBI's Sequence Read Archive (SRA) under accession number SRP047374.
DOI: 10.5061/dryad.j07v7/1
title: PEdataMetzetal

description: The data set originated from a single greenhouse experiment that tested whether high vs. low parental watering conditions altered the competitive ability and the drought tolerance of offspring plants. It was conducted with Biscutella didyma, a widespread mediterranean annual Brassicacea. Seed material originated from a semi-arid shrubland in Israel.
DOI: 10.5061/dryad.kk241/1
title: Fig1Data_Hannaetal
DOI: 10.5061/dryad.pb7j7/1
title: Figure 2b

description: Figure 2b. The relationship between the pO2 and phosphoresce intensity.
DOI: 10.5061/dryad.pb7j7/2
title: Figure 2c

description: Figure 2c. Cytotoxicity evaluation of BTP: Trypan blue dye exclusion assay to measure the cell necrosis rate and Hoechst 33342 plus propidium iodide (PI) assay to measure the cell apoptosis rate (n=10).
DOI: 10.5061/dryad.pb7j7/3
title: Figure 4a

description: Figure 4a. The growth curves of CT-26 xenografts after transplantation into BALB/c nude mice treated with saline and cisplatin (n=6).
DOI: 10.5061/dryad.pb7j7/4
title: Figure 4b

description: Figure 4b. The phosphorescence intensity of tumor imaging of CT-26 xenografts after transplantation into BALB/c nude mice treated with saline and cisplatin (n=6).Saline (100 µL) or cisplatin (1 mg/kg, 100 µL).
DOI: 10.5061/dryad.pb7j7/5
title: Figure 4c

description: Figure 4c. The quantitative data curves of immunohistochemical stain of HIF-1a in tumor-bearing mice treated with saline and cisplatin, respectively (n=3).
DOI: 10.5061/dryad.r1pf4/1
title: data in excel-file

description: Women assessed two times post partum (within 48h and after 4-6 weeks) and healthy controls assessed twice across the menstrual cycle (mid-follicular and late luteal). Demographic data and extracted beta-values from obtained differences within/between groups in BOLD-reactivity to an emotional face-matching task.
DOI: 10.5061/dryad.sq184/1
title: Data for Royal Society Open Science: Assessing costs of carrying geolocators using feather corticosterone in two species of aerial insectivore by G. D. Fairhurst et al.

description: Corticosterone data from feathers collected from tree swallows and barn swallows in North America and Europe in relation to instrumentation with a light-level geolocator, minimum age, sex, and year.