cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.11583/dtu.12281033.v1
title: The AMACONOE Database (full-scale nitrous oxide emission data)

description: This database consists of full-scale N<sub>2</sub>O emission data and related operational data reported in some publications.<br><b>Data 1</b> links to the publication ''Assessment of Full-Scale N<sub>2</sub>O Emission Characteristics and Testing of Control Concepts in an Activated Sludge Wastewater Treatment Plant with Alternating Aerobic and Anoxic Phases<i>, Environ. Sci. Technol., </i>2019, 53(21), 12485-12494''.<br><b>Data 2</b> links to the publication ''Seasonal and diurnal variability of N<sub>2</sub>O emissions from a full-scale municipal wastewater treatment plant,<i> Science of The Total Environment, </i>2015, 536, 1-11''.<br><b>Data 3</b> links to the publication ''N<sub>2</sub>O Emissions from Activated Sludge Processes, 2008−2009: Results of a National Monitoring Survey in the United States,<i> Environ. Sci. Technol., </i>2010, 44(12), 4505-4511''.
DOI: 10.6084/m9.figshare.23653380
title: DATA: <strong>Examination of Occupational and Physical Therapists' Exposure to Physical Risk Factors Using the WERA and Pain Scale </strong>

description: The dataset describes the assessment of exposure to physical risk factors among occupational and physical therapists during therapeutic sessions and pain levels.
DOI: 10.5258/soton/d2394
title: 'Ocean bottom seismometer tilt rotation correction code'

description: This code is a product of the following publication: Harmon, N., Laske, G., Crawford, W., & Rychert, C. (2022). Tilt Corrections for Normal Mode Observations on Ocean Bottom Seismic Data, an example from the PI-LAB experiment. Seismica, 1(1). https://doi.org/10.26443/seismica.v1i1.196 This is a MATLAB function for tilt correction of OBS data using a simple rotation of the vertical and two horizontals. It minimizes the energy on the vertical component via optimization. To run the code requires the optimization toolbox (function fminsearch). Inputs are X(east), Y(north) and Z(vertical), output are Znew (tilt corrected Z), Xnew (rotated X), Ynew (rotated Y), angy (azimuthal rotation in degrees) and vrt (tilt angle from vertical in degrees).
DOI: 10.34740/kaggle/dsv/6109905
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.23653584.v1
title: Supplementary data

description: Supplementary data
DOI: 10.34740/kaggle/dsv/6109910
title: 2021 World Population (updated daily)
DOI: 10.5258/soton/d2423
title: Dataset to support the Southampton doctoral thesis 'Crafting online identities: Active and reflexive identity work on Spotify'

description: Primary data collected for Crafting Online Identities: Active and Reflexive Identity Work on Spotify (PhD thesis). Data are: -Responses from an online survey, hosted by iSurvey -Online streaming observations, facilitated by Last.FM Scrobble Logs -Semi-structured, in-depth interview transcripts
DOI: 10.5517/ccdc.csd.cc2dyfd6
title: CCDC 2232818: Experimental Crystal Structure Determination

description: Related Article: Yuwei Song, Yue He, Lai Hu, Qian Cheng, Zhiyuan Chen, Rui Liu, Senqiang Zhu, Hongjun Zhu|2023|Mater. Chem. Front.|7|2860|doi:10.1039/D3QM00189J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dyff7
title: CCDC 2232819: Experimental Crystal Structure Determination

description: Related Article: Yuwei Song, Yue He, Lai Hu, Qian Cheng, Zhiyuan Chen, Rui Liu, Senqiang Zhu, Hongjun Zhu|2023|Mater. Chem. Front.|7|2860|doi:10.1039/D3QM00189J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dyfg8
title: CCDC 2232820: Experimental Crystal Structure Determination

description: Related Article: Yuwei Song, Yue He, Lai Hu, Qian Cheng, Zhiyuan Chen, Rui Liu, Senqiang Zhu, Hongjun Zhu|2023|Mater. Chem. Front.|7|2860|doi:10.1039/D3QM00189J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dyfh9
title: CCDC 2232821: Experimental Crystal Structure Determination

description: Related Article: Yuwei Song, Yue He, Lai Hu, Qian Cheng, Zhiyuan Chen, Rui Liu, Senqiang Zhu, Hongjun Zhu|2023|Mater. Chem. Front.|7|2860|doi:10.1039/D3QM00189J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.11583/dtu.15034953
title: A Comprehensive Approach to Investigate CO2 Reduction Electrocatalysts at High Current Densities- Calculations used for analysis and raw data of results

description: This is all the raw data for the manuscript entitled 'A Comprehensive Approach to Investigate CO2 Reduction Electrocatalysts at High Current Densities'<br><br>
DOI: 10.5517/ccdc.csd.cc2f5nfq
title: CCDC 2239763: Experimental Crystal Structure Determination

description: Related Article: Yi-Fan Zhang, Xin Li, Heng Zhang, Xi-Qiang Wang, Li-Ying Sun, Xiang-Long Duan, Ying-Feng Han|2023|Mater. Chem. Front.|7|2880|doi:10.1039/D3QM00167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5ngr
title: CCDC 2239764: Experimental Crystal Structure Determination

description: Related Article: Yi-Fan Zhang, Xin Li, Heng Zhang, Xi-Qiang Wang, Li-Ying Sun, Xiang-Long Duan, Ying-Feng Han|2023|Mater. Chem. Front.|7|2880|doi:10.1039/D3QM00167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5nhs
title: CCDC 2239765: Experimental Crystal Structure Determination

description: Related Article: Yi-Fan Zhang, Xin Li, Heng Zhang, Xi-Qiang Wang, Li-Ying Sun, Xiang-Long Duan, Ying-Feng Han|2023|Mater. Chem. Front.|7|2880|doi:10.1039/D3QM00167A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.11583/dtu.14791755
title: Dataset and training files for "Is the water/Pt(111) interface ordered at room temperature?"

description: Supplementary files for the publication "Is the water-Pt(111) interface ordered at room temperature?" published in the Journal of Chemical Physics. The contents are the training set used to train the neural network potentials as well as the neural RuNNer input and output files used for training and running molecular dynamics simulations.
DOI: 10.11583/dtu.20198699
title: Lipidomic analysis of moss species Bryum pseudotriquetrum and Physcomitrium patens under cold stress

description: Data based for the publication of the paper. Short abstract As non-vascular plants, which lack lignin for protection, bryophytes support themselves in harsh environment by producing various chemicals. In response to cold stress, lipids play a crucial role in cell adaptation and energy storage. Specifically, bryophytes survive at low temperatures by producing very long-chain polyunsaturated fatty acids (vl-PUFAs). However, a systematic knowledge and comprehensive understanding of the cold acclimation of bryophytes is limited. To overcome this obstacle, we performed lipid profiling using ultra-high performance liquid chromatography-quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS) of two moss species (<em>Bryum pseudotriquetrum </em>and<em> Physcomitrium patens</em>) cultivated at standard condition compared to those cultivated at cold stressed condition. The potential biomarkers were identified by multivariate statistical analysis in each species. In <em>B. pseudotriquetrum,</em> we found that the phospholipids and glycolipids increased significantly under cold stress, while storage lipids decreased. The accumulation of the lipids with high unsaturation degrees (i.e. at least one fatty acyl chain contains more than two double bonds) mostly appear in phospholipids and glycolipids. However, this trend cannot be observed in <em>P. patens</em>. This suggests that different moss species may undergo a different lipid metabolic pathway of cold adaptation. Our findings present a deeper understanding of how mosses are adapted to cold temperature and provide a basis for future studies.
DOI: 10.11583/dtu.20198699.v2
title: Lipidomic analysis of moss species Bryum pseudotriquetrum and Physcomitrium patens under cold stress

description: Data based for the publication of the paper. Short abstract As non-vascular plants, which lack lignin for protection, bryophytes support themselves in harsh environment by producing various chemicals. In response to cold stress, lipids play a crucial role in cell adaptation and energy storage. Specifically, bryophytes survive at low temperatures by producing very long-chain polyunsaturated fatty acids (vl-PUFAs). However, a systematic knowledge and comprehensive understanding of the cold acclimation of bryophytes is limited. To overcome this obstacle, we performed lipid profiling using ultra-high performance liquid chromatography-quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS) of two moss species (<em>Bryum pseudotriquetrum </em>and<em> Physcomitrium patens</em>) cultivated at standard condition compared to those cultivated at cold stressed condition. The potential biomarkers were identified by multivariate statistical analysis in each species. In <em>B. pseudotriquetrum,</em> we found that the phospholipids and glycolipids increased significantly under cold stress, while storage lipids decreased. The accumulation of the lipids with high unsaturation degrees (i.e. at least one fatty acyl chain contains more than two double bonds) mostly appear in phospholipids and glycolipids. However, this trend cannot be observed in <em>P. patens</em>. This suggests that different moss species may undergo a different lipid metabolic pathway of cold adaptation. Our findings present a deeper understanding of how mosses are adapted to cold temperature and provide a basis for future studies.
DOI: 10.11583/dtu.20198699.v1
title: Cold stress paper

description: Data based for the publication of the paper. Short abstract As non-vascular plants, which lack lignin for protection, bryophytes support themselves in harsh environment by producing various chemicals. In response to cold stress, lipids play a crucial role in cell adaptation and energy storage. Specifically, bryophytes survive at low temperatures by producing very long-chain polyunsaturated fatty acids (vl-PUFAs). However, a systematic knowledge and comprehensive understanding of the cold acclimation of bryophytes is limited. To overcome this obstacle, we performed lipid profiling using ultra-high performance liquid chromatography-quadrupole time of flight mass spectrometry (UHPLC-QTOF-MS) of two moss species (<em>Bryum pseudotriquetrum </em>and<em> Physcomitrium patens</em>) cultivated at standard condition compared to those cultivated at cold stressed condition. The potential biomarkers were identified by multivariate statistical analysis in each species. In <em>B. pseudotriquetrum,</em> we found that the phospholipids and glycolipids increased significantly under cold stress, while storage lipids decreased. The accumulation of the lipids with high unsaturation degrees (i.e. at least one fatty acyl chain contains more than two double bonds) mostly appear in phospholipids and glycolipids. However, this trend cannot be observed in <em>P. patens</em>. This suggests that different moss species may undergo a different lipid metabolic pathway of cold adaptation. Our findings present a deeper understanding of how mosses are adapted to cold temperature and provide a basis for future studies.
DOI: 10.5281/zenodo.8126538
title: Petascale Homology Search for Structure Prediction - MSAs

description: Multiple sequence alignments (MSAs) of CASP15 targets used in "Petascale Homology Search for Structure Prediction" publication. Each MSA is constructed from a combination of different sequence databases, using different search tools, 1) ColabFoldDB (CFDB) using ColabFold search module, 2) Sequence Read Archive (SRA) using MMseqs2, and 3) UniRef30+BFD using HHblits (HH). <strong>Queries</strong>: Regular CASP15 TS targets, excluding TBM-easy <strong>MSAs (A3M) </strong> CFDB (cfdb.tar.gz) SRA + CFDB (sra_cfdb.tar.gz) HH + CFDB (hh_cfdb.tar.gz) HH + SRA + CFDB (hh_sra_cfdb.tar.gz)
DOI: 10.5281/zenodo.8126537
title: Petascale Homology Search for Structure Prediction - MSAs

description: Multiple sequence alignments (MSAs) of CASP15 targets used in "Petascale Homology Search for Structure Prediction" publication. Each MSA is constructed from a combination of different sequence databases, using different search tools, 1) ColabFoldDB (CFDB) using ColabFold search module, 2) Sequence Read Archive (SRA) using MMseqs2, and 3) UniRef30+BFD using HHblits (HH). <strong>Queries</strong>: Regular CASP15 TS targets, excluding TBM-easy <strong>MSAs (A3M) </strong> CFDB (cfdb.tar.gz) SRA + CFDB (sra_cfdb.tar.gz) HH + CFDB (hh_cfdb.tar.gz) HH + SRA + CFDB (hh_sra_cfdb.tar.gz)
DOI: 10.6084/m9.figshare.23650419.v1
title: Figure source data

description: Figure source data of the “A high-quality genome assembly highlights the evolutionary history of the great bustard (<em>Otis tarda</em>, Otidiformes)”
DOI: 10.5281/zenodo.8131256
title: DEKOIS2.0 for KarmaDock

description: DEKOIS version 2 dataset for virtual screening<br> For each target, the protein structure PDB file, the compound library SMILES file and Glide-docked poses are provided.
DOI: 10.5281/zenodo.8131255
title: DEKOIS2.0 for KarmaDock

description: DEKOIS version 2 dataset for virtual screening<br> For each target, the protein structure PDB file, the compound library SMILES file and Glide-docked poses are provided.
DOI: 10.6084/m9.figshare.23649786.v3
title: Datasets by figure

description: Here are the original datasets corresponding to each of the figures of the publication. Some datasets are not fully uploaded due to limitations in the size of the storage, but they are available upon request from the authors.
DOI: 10.5258/soton/d2426
title: Dataset in support of the Southampton doctoral thesis 'Remote ischaemic conditioning as a novel therapy for necrotising enterocolitis'

description: Description of the data: There are essentially three datasets for this thesis. The first relates to a systematic review of NEC outcomes (Chapter 2) as consists of a single Microsoft Excel file with the details of the included papers and the data extracted from them. This systematic review is published as Jones, I H. and Hall, N.J. Contemporary Outcomes for Infants with Necrotizing Enterocolitis – A Systematic Review The Journal of Pediatrics 2020 220: 86-92.e3 The second relates to the primary research using an animal model of NEC. Each datafile is a Microsoft Excel file and contains multiple data points from each animal; including the macroscopic assessment of injury, microscopic assessment, using the Chiu-Park scoring system, serum cytokine analysis, and myeloperoxidase activity. In each case, the individual animal is identified by a unique, randomly generated 3-digit code. (Chapters 5-8 and 10). The Ethical approval for the animal work is included. Publication manuscripts in press / in production. The third set is the raw count from RNAseq transciptomics analysis of the intestine of animals in protocol 1a (plus controls). The datafile is a .csv file. Publication manuscript in production.
DOI: 10.5281/zenodo.8131322
title: Pre-TAVI aortic annulus sizing: Comparison between manual and semi-automated new generation software measurements in operators with different experience

description: The study compares manual and semi-automatic measurements (with specific dedicated GE Software) for aortic annulus assessment among different operators with different experience
DOI: 10.5281/zenodo.8131321
title: Pre-TAVI aortic annulus sizing: Comparison between manual and semi-automated new generation software measurements in operators with different experience

description: The study compares manual and semi-automatic measurements (with specific dedicated GE Software) for aortic annulus assessment among different operators with different experience
DOI: 10.5281/zenodo.8125516
title: Archive of biochemical data sets contained in: Guanine-containing ssDNA and RNA induce dimeric and tetrameric SAMHD1 in cryo-EM and binding studies

description: This archive contains all the biochemical data for the study "Guanine-containing ssDNA and RNA induce dimeric and tetrameric SAMHD1 in cryo-EM and binding studies". Further data supporting the structural data in this study is found in pdb and EMD accession numbers PDB ID 8TDV and EMD-41174 (RNA complex SAMHD1-T*<sub>cl</sub>) and PDB ID 8TDW and EMD-41175 (RNA complex SAMHD1-T*<sub>op</sub>). Further proteomics data is found in the Protein Exchange Database (PXD043587).
DOI: 10.5281/zenodo.8125515
title: Archive of biochemical data sets contained in: Guanine-containing ssDNA and RNA induce dimeric and tetrameric SAMHD1 in cryo-EM and binding studies

description: This archive contains all the biochemical data for the study "Guanine-containing ssDNA and RNA induce dimeric and tetrameric SAMHD1 in cryo-EM and binding studies". Further data supporting the structural data in this study is found in pdb and EMD accession numbers PDB ID 8TDV and EMD-41174 (RNA complex SAMHD1-T*<sub>cl</sub>) and PDB ID 8TDW and EMD-41175 (RNA complex SAMHD1-T*<sub>op</sub>). Further proteomics data is found in the Protein Exchange Database (PXD043587).
DOI: 10.5281/zenodo.8131152
title: Pulse waveform and stroke volume/cardiac output measurements in healthy and hemodialysis patients

description: Pulse wave measurements made with the SphygmoCor device (SphygmoCor, AtCor Medical, Australia) and stroke volume measurements made with the PhysioFlow device. Measurements taken in healthy (18 observations) and hemodialysis patients (35 observations, measurements performed about 15 mins before the start, after the start, before the end and after the end of HD session).
DOI: 10.5281/zenodo.8131151
title: Pulse waveform and stroke volume/cardiac output measurements in healthy and hemodialysis patients

description: Pulse wave measurements made with the SphygmoCor device (SphygmoCor, AtCor Medical, Australia) and stroke volume measurements made with the PhysioFlow device. Measurements taken in healthy (18 observations) and hemodialysis patients (35 observations, measurements performed about 15 mins before the start, after the start, before the end and after the end of HD session).
DOI: 10.5281/zenodo.8131393
title: Pulse waveform and stroke volume/cardiac output measurements in healthy and hemodialysis patients

description: Pulse wave measurements made with the SphygmoCor device (SphygmoCor, AtCor Medical, Australia) and stroke volume measurements made with the PhysioFlow device. Measurements taken in healthy (18 observations) and hemodialysis patients (35 observations, measurements performed about 15 mins before the start, after the start, before the end and after the end of HD session).
DOI: 10.58038/ujcm.100723
title: Sekwencje 16S w bioptatach żołądka i dwunastnicy pacjentów z celiakią.
title: 16S sequences in gastric and duodenal biopsies of patients with celiac disease.
DOI: 10.5281/zenodo.8131262
title: The first 10m resolution thermokarst lake and pond data set in the Lena basin during 2020 thawing season

description: We present the first 10m resolution thermokarst lake and pond data set in the Lena basin during 2020 thawing season. A mapping workflow was proposed and implemented on the Google Earth Engine (GEE) platform. The accuracy assessment demonstrates a satisfactory overall accuracy of 93.63%, and comparing with several land cover and waterbody products, our results exhibited better consistency with TLPs under real conditions.
DOI: 10.5281/zenodo.8131261
title: The first 10m resolution thermokarst lake and pond data set in the Lena basin during 2020 thawing season

description: We present the first 10m resolution thermokarst lake and pond data set in the Lena basin during 2020 thawing season. A mapping workflow was proposed and implemented on the Google Earth Engine (GEE) platform. The accuracy assessment demonstrates a satisfactory overall accuracy of 93.63%, and comparing with several land cover and waterbody products, our results exhibited better consistency with TLPs under real conditions.
DOI: 10.4119/unibi/2966932
title: Genome assembly and structural and functional annotation files for crop wild relatives of sugar beet

description: For the project 'Pangenome of cultivated beet and crop wild relatives reveals parental relationships of a tetraploid wild beet', genome assemblies and annotations were generated for four different wild beets: *B. corolliflora*, *B. lomatogona*, *B. macrorhiza* and *P. procumbens*. This data publication contains the genome assembly sequences and structural and functional annotation files for all of these genome sequences.
DOI: 10.11583/dtu.15263655
title: Data for "Reconstructing the exit wave in high-resolution transmission electron microscopy using machine learning"

description: Data for reproducing the manuscript "Reconstructing the exit wave in high-resolution transmission electron microscopy using machine learning" by Matthew Helmi Leth Larsen, Frederik Dahl, Lars P. Hansen, Bastian Barton, Christian Kisielowski, Stig Helveg, Ole Winther, Thomas W. Hansen, and Jakob Schiøtz.
DOI: 10.11583/dtu.15263655.v1
title: Data for "Reconstructing the exit wave in high-resolution transmission electron microscopy using machine learning"

description: Data for reproducing the manuscript "Reconstructing the exit wave in high-resolution transmission electron microscopy using machine learning" by Matthew Helmi Leth Larsen, Frederik Dahl, Lars P. Hansen, Bastian Barton, Christian Kisielowski, Stig Helveg, Ole Winther, Thomas W. Hansen, and Jakob Schiøtz.
DOI: 10.5281/zenodo.8130665
title: Number of publications in French for the winners of the Nobel Prize for Literature (extraction of the BnF catalog)

description: Python script and dataset. The dataset contains the number of publications in French one can find in the catalog of the Bibliothèque nationale de France (BnF) for every winner of the Nobel Prize of Literature. Idea from LIBER : https://twitter.com/kiru/status/1677413039132352512