cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.16904/envidat.472
title: Plant species list from 1775 and 2020 for Uetliberg Zürich

description: The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, *Vicia pisiformis*, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list. 
Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of *Thesium alpinum*, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.
description: Resource Title: SpeciesListSchinz1775_2020.csv
 Size: 3528 bytes
 Format: application/vnd.ms-excel
 URL: https://www.envidat.ch/dataset/d2ebc46e-ba4a-417b-aa16-bf79680fc1a1/resource/3f0004e5-f65b-4a9e-a7d2-b3cd20889bc0/download/specieslistschinz1775_2020.csv
 Description: The list gives the clearly identifiable plant species from Schinz (1775). Die Reise auf den Uetliberg. Verlag des Waysenhauses, Zürich). Several species given in Schinz (1775) are not identifiable to the species level and are not included in the list. Similarly, Vicia pisiformis, Erbsenartige Wicke, given by Schinz (1775) is probably a misidentification and also not included in the list. 

Latin plant species name Schinz 1775: Latin plant name (if) given by Schinz (1775); na: not available
German plant species name Schinz 1775: German plant name given by Schinz (1775)
Latin plant species name Info Flora 2024: Latin plant name according to www.infoflora.ch in 2024
German plant species name Info Flora 2024: German plant name according to www.infoflora.ch in 2024
Plant species still occurring in 2020: Plant species given in Schinz (1775) still occurring at the Uetliberg in 2020 (Zürcherische Botanische Gesellschaft. 2020. Flora des Kanton Zürich. Haupt, Bern); occurrence of Thesium alpinum, Alpen-Bergflachs, according to floristic knowledge of Rolf Holderegger and Michèle Büttner; 1: still occurring; 0: no longer occurring / extinct.
DOI: 10.16904/envidat.476
title: Fetzer_Khibiny_Treeline_NPcycling

description: Data on soil nutrients and charcteristics, tree and understory biomass, foliage nutrients, mineralogy, soil temperature and moisture along an elevation gradient from boreal forest to mountain tundra in teh Khibiny mountains (Kola Penninsula, Russia). Samples were taken along two gradients at 7 elevation level either under tree canopy (tree) and in open areas (open).
description: Resource Title: Fetzer_TreelineKhibiny_NP_Data_2024.xlsx
 Size: 358164 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/247be628-b189-44d5-938b-277de18d871d/resource/c507c639-270b-44fd-9ebc-11815fbe2b9e/download/fetzer_treelinekhibiny_np_data_2024.xlsx
 Description: Data on soils, tree biomass, plant nutrients, rock mineralogy, climate of treeline ecosystems in Khibiny mountains, Kola Penninsula, Russia
DOI: 10.16904/envidat.492
title: Simulation parameters and outputs for a rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism

description: In the associated study [1], two time-lapse temperature gradient metamorphism series of three-dimensional micro-computed tomography images of snow (obtained by [2]) have been used to model the decrease of specific surface area (SSA) over time based on the pore-scale physics. We conducted finite element simulations of one-way coupled heat and mass diffusion in order to estimation the spatial pattern of water vapor deposition and sublimation, which controls the evolution of the SSA over time. We notably studied the influence of the condensation coefficient, a key but poorly constrained physical parameter.
This dataset provides the parameters used for the mesh generation and the finite element simulations. It also includes the ice fraction, specific surface area per unit volume and surface average of mean curvature and vapor field obtained as outputs from the mesh process and the simulations.
[1]: Braun, A., Fourteau, K., and Löwe, H.: A rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2023-1947, 2023.
[2]: Pinzer, B. R., Schneebeli, M., and Kaempfer, T. U.: Vapor flux and recrystallization during dry snow metamorphism under a steady temperature gradient as observed by time-lapse micro-tomography, The Cryosphere, 6, 1141–1155, https://doi.org/10.5194/tc-6-1141-2012, 2012.
description: Resource Title: parameters_for_SSA_evolution_snow.ods
 Size: 50429 bytes
 Format: application/vnd.oasis.opendocument.spreadsheet
 URL: https://www.envidat.ch/dataset/53044b16-6ecb-41dc-a5dd-12ac261469b1/resource/90fb3709-67b5-400d-9490-3869eefb6e9c/download/parameters_for_ssa_evolution_snow.ods
 Description: Simulation parameters and outputs for "A rigorous approach to the specific surface area evolution in snow during temperature gradient metamorphism"
DOI: 10.16904/envidat.491
title: Repeated detection-nondetection data of corticolous lichens from a standardised monitoring across Switzerland

description: The available lichen data consists of detection/nondetection data (1/0) of 373 tree-inhabiting (*corticolous*) lichen species from 416 plots surveyed 1-2 times. The lichen data were originally collected for the purpose of the Red List of epiphytic lichen species in Switzerland ([Scheidegger *et al.* 2002](https://www.bafu.admin.ch/bafu/de/home/themen/biodiversitaet/publikationen-studien/publikationen/rote-liste-gefaehrdete-arten-baum-erdbewohnende-flechten.html)), but updated to recent nomenclature for the purpose of this study.
This repository contains all the supporting data and R code for the paper:
von Hirschheydt, G., Kéry, M., Ekman, S., Stofer, S., Dietrich, M., Keller, C., Scheidegger, C. (2024) **Occupancy model reveals limited detectability of lichens in a standardised large-scale monitoring**. *Journal of Vegetation Science*.
Results and figures presented in the manuscript should be reproducible (with small differences in the latter digits due to stochasticity of the MCMC sampler) with the provided data and code.
The downloadable `.zip` folder has the following structure:
* `0_data/`
* `1_code/`
* `2_output/`
* `lichen_detectability.Rproj`
* `README.txt`
* `workflow.html`
- `workflow.Rmd` 
 
The main folder and the three subordinate folders each have their own `README*.txt` file. These describe each available file in detail and should be consulted prior to using the data or running any code. The file `lichen_detectability.Rproj` stores the information about the R project. The user can open the project by clicking/double-clicking on this file which will automatically define the repository as working directory for the R session. If the user does not use RStudio/Posit, they may have to set the working directory manually to the stored location in the R files. The files `workflow.*` guide the user through the analysis (`1_code/*.R`) in the correct order so that they can:
- bundle the cleaned data into a data list readable for JAGS
- fit the multi-species occupancy model to the data and store the output
- assess the goodness-of-fit of the model to the data
- conduct a prior sensitivity analysis with 2 additional sets of priors
- extract the summary statistics reported in the manuscript and supplementary materials
- generate the figures shown in the manuscript and supplementary materials
description: Resource Title: lichen_detectability.zip
 Size: 1405403 bytes
 Format: application/x-zip-compressed
 URL: https://www.envidat.ch/dataset/c3307528-44fd-4f64-931d-c28d46ca6920/resource/aac31859-da97-4c95-8789-1200ead5821e/download/lichen_detectability.zip
 Description: Repository containing the full data, code, README and workflow files.
DOI: 10.16904/envidat.479
title: Understanding snow saltation parameterizations - Reproducibility

description: This dataset includes the necessary files to reproduce the results presented in Melo et al. (2024):
- code version used in the simulations (also available at the institutional [GitLab repository](https://gitlabext.wsl.ch/atmospheric-models/les-lsm) - tag 'r2024')
- input files to run the simulations
- post-processing scripts (MATLAB and FORTRAN)
- selected raw output files
- post-processed results (MATLAB data files).
 **Note:** Direct model outputs are not provided because of their size, but they can be shared upon request. They can be reproduced by running the code. The post-processed results allow you to reproduce all figures in Melo et al. (2024).
description: Resource Title: Melo_et_al_2024_DataSet.zip
 Size: 122037748 bytes
 Format: application/zip
 URL: https://www.envidat.ch/dataset/ff3f1076-0e8a-42ee-a92e-ed2873e59055/resource/01ba5eb5-e25b-438b-a182-ac5ebe24912f/download/melo_et_al_2024_dataset.zip
 Description: Code and input files to reproduce the simulations in Melo et al. (2024), as well as the post-processing scripts used in the analysis.
DOI: 10.16904/envidat.489
title: Volumetric Water Content Measurements at Illgraben 2022

description: This dataset contains volumetric water content measurements, water level, and pressure for a location along the Illgraben debris-flow channel (46°18'34.92"N, 7°37'59.26"E). The measurements (165780 data points) were conducted during the 2022 debris-flow season (May to October) at a sampling rate of five minutes. The dataset specifically contains:
- At 0.25 m depth with an ECH2O EC-5 sensor: volumetric water content (VWC)
- At 0.45 m depth with an ECH2O EC-5 sensor: VWC
- At 0.65 m depth with a TEROS 12: VWC
- At 0.85 m depth with a TEROS 12: VWC
- At 0.80 m depth with a CTD10: water level (WL), temperature (T), electric conductivity (EC) and air reference pressure (Pref)
Please note that due to malfunctioning the CTD10 data was only available until 27 June 2022.
More specific sensor information can be found in the manuals under the following links:
[EC-5](https://publications.metergroup.com/Manuals/20431_EC-5_Manual_Web.pdf)
[TEROS 12](https://publications.metergroup.com/Manuals/20587_TEROS11-12_Manual_Web.pdf)
[CTD10](https://www.agrolan.co.il/UploadProductFiles/CTD-10-manual.pdf)
For a detailed description of the dataset and its use, please refer to the related publication.
description: Resource Title: SM_Illgraben_2022.csv
 Size: 1619689 bytes
 Format: text/csv
 URL: https://www.envidat.ch/dataset/38eb1f60-9d3b-46bf-ab58-ba2f89ba0ed2/resource/521b8f13-6af9-4575-824c-969ea8914adc/download/sm_illgraben_2022.csv
 Description:
description: Resource Title: readme.md
 Size: 1216 bytes
 Format: text/markdown
 URL: https://www.envidat.ch/dataset/38eb1f60-9d3b-46bf-ab58-ba2f89ba0ed2/resource/dd78b123-0fa5-447a-af72-08bd58ab57fe/download/readme.md
 Description:
DOI: 10.16904/envidat.505
title: Nutrient sustainability in beech forests

description: With this study, our aim was to estimate the nutrient fluxes relevant for assessing nutrient sustainability as accurately as possible and to calculate nutrient balances for alternative forest management scenarios. Furthermore, we tested whether mapping units from existing geologic maps can serve as a basis for forest practitioners to estimate nutrient sustainability or whether more detailed data is needed. Positive fluxes include deposition and weathering, while negative fluxes include losses due to leaching and nutrient removal through timber harvesting in the balance. Weathering and leachate losses were modeled with a geochemical model. The SwissStandSim model was used to simulate the biomass growth under different harvesting and silvicultural strategies, allowing sustainability to be assessed for each nutrient at a given intensity of use. This assessment was made per rotation period of 100 years based on two criteria: i) nutrient supply; and ii) total stocking volume.
description: Resource Title: Nutrient_export_harvesting.xlsx
 Size: 15618 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/b938dd05-54ab-4dc0-b7d8-a106567322f4/resource/3f5aa362-7738-4a1e-8cce-9c0b60f0ef71/download/nutrient_export_harvesting.xlsx
 Description:
description: Resource Title: Nutrient_mass_balances.xlsx
 Size: 27714 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/b938dd05-54ab-4dc0-b7d8-a106567322f4/resource/23bb8222-159c-42b8-8e06-dd14b8469600/download/nutrient_mass_balances.xlsx
 Description:
description: Resource Title: Nutrient_tree_compartments.xlsx
 Size: 39892 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/b938dd05-54ab-4dc0-b7d8-a106567322f4/resource/59464da8-a4aa-4adf-86d1-df763223e9c4/download/nutrient_tree_compartments.xlsx
 Description:
description: Resource Title: Soil_Properties_TabA2.xlsx
 Size: 50339 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/b938dd05-54ab-4dc0-b7d8-a106567322f4/resource/ba211033-8761-4d53-a1fd-6e741926f3d6/download/soil_properties_taba2.xlsx
 Description:
DOI: 10.16904/envidat.481
title: Gaudergrat Wind LiDAR Data Campaign

description: This repository corresponds to the data presented in the publication (DOI to come following pre-print) which is not otherwise publicly available:
- Radial Velocity data from a Doppler Wind LiDAR: This data corresponds to the wind LiDAR data used in the publication, which was used to validate the 3D wind field from the HICAR atmospheric model. This data consists of .netcdf files, which self-describe the data contained, including information on acquisition time and location.
- HICAR model output: Simulations at a 50m horizontal grid resolution, hourly output over a 15 day period. Can be made available upon request, due to it's large file size.
description: Resource Title: RHE.zip
 Size: 190672996 bytes
 Format: application/zip
 URL: https://www.envidat.ch/dataset/defc4384-68c2-4d8d-8c6e-23800d865a42/resource/615bec9f-8b3d-4f84-a518-fbe8ae971685/download/rhe.zip
 Description: Radial Velocity from RHE scans
description: Resource Title: RHI.zip
 Size: 44706163 bytes
 Format: application/zip
 URL: https://www.envidat.ch/dataset/defc4384-68c2-4d8d-8c6e-23800d865a42/resource/10e2c7fc-1e13-4bd4-8d9d-2bc22c50de3b/download/rhi.zip
 Description: Radial Velocity from RHI scans
DOI: 10.17632/c8ckhry7z2
title: Replication Package for "The Capital Matthew Effect"

description: Replication folder for the paper entitled "The Capital Matthew Effect: Directed Technical Change and International Capital Flows" by Dan Su
DOI: 10.17632/c8ckhry7z2.1
title: Replication Package for "The Capital Matthew Effect"

description: Replication folder for the paper entitled "The Capital Matthew Effect: Directed Technical Change and International Capital Flows" by Dan Su
DOI: 10.15468/dl.4kwy5f
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Liolaemus poconchilensis Valladares, 2004"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057289-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuyxq8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cocconeis engelbrechtii Cholnoky, 1955",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057291-250525065834625/datasets/export for details.
DOI: 10.16904/envidat.526
title: Data interactive avalanche segmentation

description: Images and corresponding avalanche annotations used for interactive avalanche segmentation:
SLF train, vali and test
WebNew
GroundPic
UserPic
UIBK dataset: List of images used
Pictures are from SLF (mostly from the Dischma Cams) if not otherwise indicated. If used, the data needs to be properly cited!
description: Resource Title: IAS_data.zip
 Size: 2877531466 bytes
 Format: application/x-zip-compressed
 URL: https://www.envidat.ch/dataset/85ae804d-3282-4935-82b2-9e43d024c266/resource/e0d0a419-86e9-4fde-9254-410851363b80/download/ias_data.zip
 Description:
DOI: 10.16904/envidat.527
title: Carbon, oxygen and hydrogen isotopes in tree-ring cellulose of silver fir and Douglas-fir in Switzerland

description: This dataset contains annual data on carbon, oxygen and hydrogen stable isotope ratios from tree-ring cellulose in 24 silver fir and 24 Douglas-fir trees in Switzerland for the period 2000-2020. It also contains the corresponding tree-ring widths and information on the trees (e.g., tree crown volume).
In addition, the dataset contains variables characterizing the local neighborhood of the sampled trees (competition and diversity indices) used in Charlet de Sauvage, J., Treydte, K., Saurer, M., & Lévesque, M. (2024). Triple-isotope analysis in tree-ring cellulose suggests only moderate effects of tree species mixture on the climate sensitivity of silver fir and Douglas-fir. Tree Physiology, tpae067. https://doi.org/10.1093/treephys/tpae067.
Oxygen and hydrogen stable isotope ratios were also used in Charlet de Sauvage, J., Saurer, M., Treydte, K., & Lévesque, M. (in revision) Decoupling of tree-ring cellulose δ18O and δ2H highlighted by their contrasting relationships to climate and to tree intrinsic variables. Plant, Cell & Environment.
A readme file accompanying the dataset explains each variable.
description: Resource Title: Dataset triple isotope Abies alba Pseudotsuga menziesii (.csv)
 Size: 195358 bytes
 Format: application/vnd.ms-excel
 URL: https://www.envidat.ch/dataset/4ab59ee2-10b0-4f82-9646-249acac8ce34/resource/f4cf47cb-e9b8-49ce-8edc-39cba67566a0/download/dataset_triple_isotope_a_alba_p_menziesii.csv
 Description: This file contains all the data on the trees, the tree-ring width and the stable isotope ratios.
description: Resource Title: Readme dataset (.txt)
 Size: 3621 bytes
 Format: text/plain
 URL: https://www.envidat.ch/dataset/4ab59ee2-10b0-4f82-9646-249acac8ce34/resource/82c6815d-812f-4a04-b544-4d7106dd7f86/download/readme_dataset_triple_isotope_a_alba_p_menziesii.txt
 Description: This file contains the description of each variable in the dataset and references to the corresponding scientific publications.
DOI: 10.16904/envidat.534
title: Schynige Platte Alpine Botanical Garden land-use experiment

description: This dataset was used for the publication "Boch, Blaser, Föhr, Küchler, Fischer (2024) Haymaking complemented by moderate disturbances can sustain and restore species-rich alpine to subalpine grasslands" in Alpine Botany. It contains vegetation records (species lists, percentage cover of species) of six grassland sites with each five 2x2 m treatment plots established in the Schynige Platte Alpine Botanical Garden. In a six-year experiment, we tested the response of plant species richness and mean ecological indicator values that we calculated from this dataset, to management treatments ranging from combined haymaking and scraping, to haymaking or scraping alone, to complete abandonment. We further tested whether the treatments led to changes in species composition, i.e. shifts to different vegetation types.
description: Resource Title: Boch et al. - Vegetation records Alpengarten Schynige Platte 2010-2015.xlsx
 Size: 68139 bytes
 Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
 URL: https://www.envidat.ch/dataset/c23faf5f-f34f-494f-bd1a-76b2d9ef0f42/resource/0bc7f50d-5f8c-4bba-8e70-6b541a0ad516/download/boch-et-al.-vegetation-records-alpengarten-schynige-platte-2010-2015.xlsx
 Description: Vegetation records (species lists, percentage cover of species) of a six-year experiment to test whether different land-use treatments affect species diversity and composition in alpine to subalpine graslands.
DOI: 10.5281/zenodo.15622875
title: Effects of conventional and biodegradable microplastics on soil invertebrate communities in PAPILLONS field plot experiment in Finland, Germany and Spain

description: Data on soil invertebrate communities at PAPILLONS field plot experiment sites in Finland (Natural Resources Institute Finland and Finnish Environment Institute), Germany (University of Bonn) and Spain (IMDEA Water), sampled in autumn 2022 and 2023. At all three study sites, five treatments with five replicate plots were established in spring 2022: control with no microplastic addition, and two nominal concentrations (0.005%, 0.05%) of conventional polyethene (PE) and blend of starch and polybutylene adipate terephthalate (PBAT) microplastics. Microarthropods and earthworms from Spain and Germany were analysed at the Vrije Universiteit Amsterdam and part of the earthworms and enchytraeids at Finnish Environment Institute. eDNA data (Natural Resources Institute Finland) on microfauna has been saved in another data repository.
DOI: 10.5281/zenodo.15622876
title: Effects of conventional and biodegradable microplastics on soil invertebrate communities in PAPILLONS field plot experiment in Finland, Germany and Spain

description: Data on soil invertebrate communities at PAPILLONS field plot experiment sites in Finland (Natural Resources Institute Finland and Finnish Environment Institute), Germany (University of Bonn) and Spain (IMDEA Water), sampled in autumn 2022 and 2023. At all three study sites, five treatments with five replicate plots were established in spring 2022: control with no microplastic addition, and two nominal concentrations (0.005%, 0.05%) of conventional polyethene (PE) and blend of starch and polybutylene adipate terephthalate (PBAT) microplastics. Microarthropods and earthworms from Spain and Germany were analysed at the Vrije Universiteit Amsterdam and part of the earthworms and enchytraeids at Finnish Environment Institute. eDNA data (Natural Resources Institute Finland) on microfauna has been saved in another data repository.
DOI: 10.15468/dl.p7rmwx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiloglanis niger Roberts, 1989",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((38.1793 -46.1562,37.7677 -46.1194,37.2426 -46.5425,37.1382 -46.9324,37.1382 -47.1134,37.4683 -47.4451,38.1018 -47.4039,38.3904 -47.0323,38.4703 -46.4598,38.1793 -46.1562))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057288-250525065834625/datasets/export for details.