cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9891104.v1
title: Hypermethylation-associated downregulation of microRNA-4456 in hypersexual disorder with putative influence on oxytocin signalling: A DNA methylation analysis of miRNA genes

description: Hypersexual disorder (HD) was proposed as a diagnosis in the DSM-5 and the classification ‘Compulsive Sexual Behavior Disorder’ is now presented as an impulse-control disorder in ICD-11. HD incorporates several pathophysiological mechanisms; including impulsivity, compulsivity, sexual desire dysregulation and sexual addiction. No previous study investigated HD in a methylation analysis limited to microRNA (miRNA) associated CpG-sites. The genome wide methylation pattern was measured in whole blood from 60 subjects with HD and 33 healthy volunteers using the Illumina EPIC BeadChip. 8,852 miRNA associated CpG-sites were investigated in multiple linear regression analyses of methylation M-values to a binary independent variable of disease state (HD or healthy volunteer), adjusting for optimally determined covariates. Expression levels of candidate miRNAs were investigated in the same individuals for differential expression analysis. Candidate methylation loci were further studied for an association with alcohol dependence in an independent cohort of 107 subjects. Two CpG-sites were borderline significant in HD – cg18222192 (MIR708)(<i>p</i> &lt; 10E-05,<i>p</i><sub>FDR</sub> = 5.81E-02) and cg01299774 (MIR4456)(p &lt; 10E-06, <i>p</i><sub>FDR</sub> = 5.81E-02). MIR4456 was significantly lower expressed in HD in both univariate (p &lt; 0.0001) and multivariate (p &lt; 0.05) analyses. Cg01299774 methylation levels were inversely correlated with expression levels of MIR4456 (p &lt; 0.01) and were also differentially methylated in alcohol dependence (p = 0.026). Gene target prediction and pathway analysis revealed that MIR4456 putatively targets genes preferentially expressed in brain and that are involved in major neuronal molecular mechanisms thought to be relevant for HD, e.g., the oxytocin signalling pathway. In summary, our study implicates a potential contribution of MIR4456 in the pathophysiology of HD by putatively influencing oxytocin signalling.
DOI: 10.6084/m9.figshare.9891125.v1
title: the site-mean ChRM directions and geochemical data in Majiang reservoir

description: We have conducted an integrated magnetic, petrographic, and geochemical investigation of several lithological units in the Majiang paleoreservoir to better understand the destruction of hydrocarbon systems. The manuscript has been accepted in the journal of GRL, and we hope to publish our original data here.
DOI: 10.6084/m9.figshare.9890957
title: RHP O2 VS SIN 02

description: data base proyect
DOI: 10.6084/m9.figshare.9890957.v1
title: RHP O2 VS SIN 02

description: data base proyect
DOI: 10.6084/m9.figshare.9890801
title: Different Samples, Different Results? How Sampling Techniques Affect the Results of Field Experiments on Ethnic Discrimination

description: The file AuspurgSchneckThiel2019_Appendix.pdf contains further analyses not reported in the main article.<br><br>The data is provided in stata format (version 15.1). rssm_wide.dta is the stata dataset. an_rssm_wide.do is the analysis file for reproducing the results reported in the article and the Appendix. The file discrim.do is an analysis routine for analyzing discrimination that is called in an_rssm_wide.do.
DOI: 10.6084/m9.figshare.9890618
title: 2019-09 deposit of Wikidata in PubChem

description: CSV file for submission of Wikidata entries with SMILES (canonical and isomeric) created with https://github.com/egonw/ons-wikidata/blob/master/PubChem/createSDF.groovy
DOI: 10.6084/m9.figshare.9890618.v1
title: 2019-09 deposit of Wikidata in PubChem

description: CSV file for submission of Wikidata entries with SMILES (canonical and isomeric) created with https://github.com/egonw/ons-wikidata/blob/master/PubChem/createSDF.groovy
DOI: 10.6084/m9.figshare.9890801.v1
title: Different Samples, Different Results? How Sampling Techniques Affect the Results of Field Experiments on Ethnic Discrimination

description: The file AuspurgSchneckThiel2019_Appendix.pdf contains further analyses not reported in the main article.<br><br>The data is provided in stata format (version 15.1). rssm_wide.dta is the stata dataset. an_rssm_wide.do is the analysis file for reproducing the results reported in the article and the Appendix. The file discrim.do is an analysis routine for analyzing discrimination that is called in an_rssm_wide.do.
DOI: 10.6084/m9.figshare.9890531
title: HydroATLAS version 1.0

description: This is the HydroATLAS dataset, version 1.0, which is fully described in Linke et al. 2019 (see DOI-link in References below).<br><br><b>In this Figshare repository, there are 4 zipped data files (each &gt;2GB in size) containing all global data in 2 formats:</b>1. BasinATLAS_Data_v10.gdb.zip (sub-basin polygons, levels 1-12, in geodatabase format)<br>2. BasinATLAS_Data_v10_shp.zip (sub-basin polygons, levels 1-12, in shapefile format)3. RiverATLAS_Data_v10.gdb.zip (river reach lines in geodatabase format)4. RiverATLAS_Data_v10_shp.zip (river reach lines in shapefile format)<br><b>There are also 3 PDF files that provide technical specifications:</b>1. HydroATLAS_TechDoc_v10.pdf (technical documentation)2. BasinATLAS_Catalog_v10.pdf (catalog file listing all sub-basin attributes)<br>3. RiverATLAS_Catalog_v10.pdf (catalog file listing all river reach attributes)
DOI: 10.6084/m9.figshare.9890426
title: The result of GO annotation corresponds to the GO term

description: The result of GO annotation corresponds to the GO term
DOI: 10.6084/m9.figshare.9890453.v1
title: Disorder residues and number of unfolding CK2 phosphorylation motifs in a CKa pulldown

description: Disorder residues and number of unfolding CK2 phosphorylation motifs in a CKa pulldown proteins. Investigatiion if disordered proteins are highly prevalent in the CKa pulldown.
DOI: 10.6084/m9.figshare.9890423
title: The result of GO annotation

description: The result of GO annotation
DOI: 10.6084/m9.figshare.9890414
title: The KOG annotation corresponding to the KOG level

description: The KOG annotation corresponding to the KOG level
DOI: 10.6084/m9.figshare.9890420
title: The statistics of KEGG annotation

description: The statistics of KEGG annotation
DOI: 10.6084/m9.figshare.9890423.v1
title: The result of GO annotation

description: The result of GO annotation
DOI: 10.6084/m9.figshare.9890420.v1
title: The statistics of KEGG annotation

description: The statistics of KEGG annotation
DOI: 10.6084/m9.figshare.9890426.v1
title: The result of GO annotation corresponds to the GO term

description: The result of GO annotation corresponds to the GO term
DOI: 10.6084/m9.figshare.9890402
title: The gtf of MX generate by SUPPA2

description: The gtf of MX generate by SUPPA2
DOI: 10.6084/m9.figshare.9890408
title: The gtf of A5 generate by SUPPA2

description: The gtf of A5 generate by SUPPA2
DOI: 10.6084/m9.figshare.9890414.v1
title: The KOG annotation corresponding to the KOG level

description: The KOG annotation corresponding to the KOG level
DOI: 10.6084/m9.figshare.9890405
title: The gtf of AL generate by SUPPA2

description: The gtf of AL generate by SUPPA2
DOI: 10.6084/m9.figshare.9890396
title: The gtf of AF generate by SUPPA2

description: The gtf of AF generate by SUPPA2
DOI: 10.6084/m9.figshare.9890399
title: The gtf of A3 generate by SUPPA2

description: The gtf of A3 generate by SUPPA2
DOI: 10.6084/m9.figshare.9890408.v1
title: The gtf of A5 generate by SUPPA2

description: The gtf of A5 generate by SUPPA2
DOI: 10.6084/m9.figshare.9890396.v1
title: The gtf of AF generate by SUPPA2

description: The gtf of AF generate by SUPPA2
DOI: 10.6084/m9.figshare.9890402.v1
title: The gtf of MX generate by SUPPA2

description: The gtf of MX generate by SUPPA2
DOI: 10.6084/m9.figshare.9890405.v1
title: The gtf of AL generate by SUPPA2

description: The gtf of AL generate by SUPPA2
DOI: 10.6084/m9.figshare.9890390
title: The gtf of SE generate by SUPPA2

description: The gtf of SE generate by SUPPA2
DOI: 10.6084/m9.figshare.9890390.v1
title: The gtf of SE generate by SUPPA2

description: The gtf of SE generate by SUPPA2
DOI: 10.6084/m9.figshare.9890393
title: The gtf of RI generate by SUPPA2

description: The gtf of RI generate by SUPPA2
DOI: 10.6084/m9.figshare.9890387
title: Investigating Teachers’ Happiness in the Contexts of Spiritual Well-Being and Stress

description: This is the data set of the study which aims to reveal whether or not teachers’ well-being is affected by anomie, transcendence, and harmony with nature, which are the dimensions of spirituality, and stress. The obtained data is considered to provide psychological counselors with information on using spirituality in the counseling environment and the relationships of stress and well-being. When examining the literature, studies are found to have investigated the relationship of stress with well-being and of well-being with spirituality; however, no research has been encountered on the relationship among the three variables using the path model. A total of 378 teachers working in various cities in Turkey participated in the research. The PERMA, Spiritual Well-Being, and Perceived Stress Scales have been used in collecting data. The structural equation model and correlational analysis have been used in the data analysis. According to the results, well-being predicts anomie negatively and transcendence positively. Anomie is the negative descriptor of transcendence and harmony with nature. Stress positively explains anomie.
DOI: 10.6084/m9.figshare.9890387.v1
title: Investigating Teachers’ Happiness in the Contexts of Spiritual Well-Being and Stress

description: This is the data set of the study which aims to reveal whether or not teachers’ well-being is affected by anomie, transcendence, and harmony with nature, which are the dimensions of spirituality, and stress. The obtained data is considered to provide psychological counselors with information on using spirituality in the counseling environment and the relationships of stress and well-being. When examining the literature, studies are found to have investigated the relationship of stress with well-being and of well-being with spirituality; however, no research has been encountered on the relationship among the three variables using the path model. A total of 378 teachers working in various cities in Turkey participated in the research. The PERMA, Spiritual Well-Being, and Perceived Stress Scales have been used in collecting data. The structural equation model and correlational analysis have been used in the data analysis. According to the results, well-being predicts anomie negatively and transcendence positively. Anomie is the negative descriptor of transcendence and harmony with nature. Stress positively explains anomie.
DOI: 10.6084/m9.figshare.9890018
title: Normalized gene counts

description: normalized gene counts of gene expression data of Brachypodium sylvaticum ecotypes AIn1 and Osl1 <br>
DOI: 10.6084/m9.figshare.9890018.v1
title: Normalized gene counts

description: normalized gene counts of gene expression data of Brachypodium sylvaticum ecotypes AIn1 and Osl1 <br>
DOI: 10.6084/m9.figshare.9890006
title: Transcriptome dataset of Bacillus subtilis 168 cultivated in LB medium

description: Useful as a prolific secretor of enzymes in biotechnology, <i>Bacillus subtilis</i> is also an important microbial chassis for metabolic engineering applications where the goal is to over-produce a particular metabolite through carefully choreographed modulation of gene expression. But, the bedrock of metabolic engineering remains a thorough understanding of cell metabolism under differing stress and nutritional conditions, which provides the necessary inputs for formulating ideas on how modulation of gene expression could direct metabolic flux towards the target compound. To do this, transcriptome analysis has become an enabling tool for understanding differential gene expression in cells. In this work, the experimentally obtained RNA-seq transcriptome of <i>Bacillus subtilis</i> 168 grown in LB medium (Array Express accession number E-GEOD-74926) was analyzed by an in-house MATLAB software for determining the relative expression levels of all genes in the organism at the global level. Specifically, the dataset is a culmination of analyzing 0.4 million reads in the transcriptome analysis, where each read that aligned to a particular gene sequence of <i>B. subtilis</i> 168 was counted. Aggregating over all reads across the entire genome, the transcriptomic picture that emerges portrait a set of highly expressed genes comprising <i>dnaA, gyrB, dnaN, recF, gyrA, guaB, dacA, yaaC, pdxS, </i>and <i>sleL</i>. Overall, RNA-seq transcriptomics provides useful fundamental information on gene expression under varied conditions, which constitutes the basis on which hypothesis could be formulated to help direct flux to particular nodes and metabolites in metabolic engineering applications. Being a biotechnology workhorse, the current transcriptome dataset of <i>B. subtilis</i> 168 in rich LB medium should serve as a useful resource for researchers in both fundamental and applied biology fields. <br><br>
DOI: 10.6084/m9.figshare.9890006.v1
title: Transcriptome dataset of Bacillus subtilis 168 cultivated in LB medium

description: Useful as a prolific secretor of enzymes in biotechnology, <i>Bacillus subtilis</i> is also an important microbial chassis for metabolic engineering applications where the goal is to over-produce a particular metabolite through carefully choreographed modulation of gene expression. But, the bedrock of metabolic engineering remains a thorough understanding of cell metabolism under differing stress and nutritional conditions, which provides the necessary inputs for formulating ideas on how modulation of gene expression could direct metabolic flux towards the target compound. To do this, transcriptome analysis has become an enabling tool for understanding differential gene expression in cells. In this work, the experimentally obtained RNA-seq transcriptome of <i>Bacillus subtilis</i> 168 grown in LB medium (Array Express accession number E-GEOD-74926) was analyzed by an in-house MATLAB software for determining the relative expression levels of all genes in the organism at the global level. Specifically, the dataset is a culmination of analyzing 0.4 million reads in the transcriptome analysis, where each read that aligned to a particular gene sequence of <i>B. subtilis</i> 168 was counted. Aggregating over all reads across the entire genome, the transcriptomic picture that emerges portrait a set of highly expressed genes comprising <i>dnaA, gyrB, dnaN, recF, gyrA, guaB, dacA, yaaC, pdxS, </i>and <i>sleL</i>. Overall, RNA-seq transcriptomics provides useful fundamental information on gene expression under varied conditions, which constitutes the basis on which hypothesis could be formulated to help direct flux to particular nodes and metabolites in metabolic engineering applications. Being a biotechnology workhorse, the current transcriptome dataset of <i>B. subtilis</i> 168 in rich LB medium should serve as a useful resource for researchers in both fundamental and applied biology fields. <br><br>
DOI: 10.6084/m9.figshare.9889709
title: Metadata record for: Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam

description: This dataset contains key characteristics about the data described in the Data Descriptor Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br> <br>
DOI: 10.6084/m9.figshare.9889709.v2
title: Metadata record for: Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam

description: This dataset contains key characteristics about the data described in the Data Descriptor Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br> <br> <br>
DOI: 10.6084/m9.figshare.9889709.v1
title: Metadata record for: Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam

description: This dataset contains key characteristics about the data described in the Data Descriptor Sample descriptors linked to metagenomic sequencing data from human and animal enteric samples from Vietnam. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.9889517
title: supplemental data.xlsx

description: support information
DOI: 10.6084/m9.figshare.9889517.v1
title: supplemental data.xlsx

description: support information
DOI: 10.6084/m9.figshare.9889379
title: ME_nc14_ant.hic

description: Drosophila NC14 anterior HiC from Mike Eisen lab.
DOI: 10.6084/m9.figshare.9889379.v1
title: ME_nc14_ant.hic

description: Drosophila NC14 anterior HiC from Mike Eisen lab.
DOI: 10.6084/m9.figshare.9888998
title: ITS2 sequence

description: ITS2 sequence of Zanthoxylum
DOI: 10.6084/m9.figshare.9888986
title: CallVars.xlsx from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: Measurements from all call clips used for the analysis.
DOI: 10.6084/m9.figshare.9888983
title: CallRate.xlsx from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: Data on call rate used for the analysis.
DOI: 10.6084/m9.figshare.9888998.v1
title: ITS2 sequence

description: ITS2 sequence of Zanthoxylum
DOI: 10.6084/m9.figshare.9888980
title: RScript_BiolLett_Parksetal.R from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: R statistical code used for the analysis.
DOI: 10.6084/m9.figshare.9888986.v1
title: CallVars.xlsx from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: Measurements from all call clips used for the analysis.
DOI: 10.6084/m9.figshare.9888980.v1
title: RScript_BiolLett_Parksetal.R from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: R statistical code used for the analysis.
DOI: 10.6084/m9.figshare.9888983.v1
title: CallRate.xlsx from Acoustic crypsis in communication by North Atlantic right whale mother–calf pairs on the calving grounds

description: Data on call rate used for the analysis.
DOI: 10.6084/m9.figshare.9888938
title: Predicted peptide sequences from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains all predicted peptides from the BF2 L. piscatorius assembly (including #non-immune peptides)
DOI: 10.6084/m9.figshare.9888932
title: Scripts from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains scripts used to produce the data
DOI: 10.6084/m9.figshare.9888935
title: Top UniProt matches for hypothetical orthologues. from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains information about the top 5 UniProt matches for selected proteins which we consider to be orthologous to a particular immune gene.
DOI: 10.6084/m9.figshare.9888938.v1
title: Predicted peptide sequences from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains all predicted peptides from the BF2 L. piscatorius assembly (including #non-immune peptides)
DOI: 10.6084/m9.figshare.9888941
title: R scripts and functions. from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains functions and R scripts used to plot the data
DOI: 10.6084/m9.figshare.9888935.v1
title: Top UniProt matches for hypothetical orthologues. from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains information about the top 5 UniProt matches for selected proteins which we consider to be orthologous to a particular immune gene.
DOI: 10.6084/m9.figshare.9888941.v1
title: R scripts and functions. from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains functions and R scripts used to plot the data
DOI: 10.6084/m9.figshare.9888932.v1
title: Scripts from Complete loss of the MHC II pathway in an anglerfish, <i>Lophius piscatorius</i>

description: This file contains scripts used to produce the data
DOI: 10.6084/m9.figshare.9888917
title: Appendix S4 from Bark coverage shifts assembly processes of microbial decomposer communities in dead wood

description: List of fungal and bacterial OTUs and their corresponding taxonomic classifications.
DOI: 10.6084/m9.figshare.9888917.v1
title: Appendix S4 from Bark coverage shifts assembly processes of microbial decomposer communities in dead wood

description: List of fungal and bacterial OTUs and their corresponding taxonomic classifications.
DOI: 10.5517/ccdc.csd.cc241wjm
title: CCDC 1968020: Experimental Crystal Structure Determination

description: Related Article: Yang Yu, Xin-Yu Wang, Ju-Yin Peng, Tao Liu, Yu-Long Zhao|2020|Chem.Commun.|56|9815|doi:10.1039/D0CC00512F
DOI: 10.5517/ccdc.csd.cc2458wh
title: CCDC 1971286: Experimental Crystal Structure Determination

description: Related Article: Beatriz Merillas, Elena Cuéllar, Alberto Diez-Varga, Tomás Torroba, Gabriel García-Herbosa, Sergio Fernández, Julio Lloret-Fillol, Jose M. Martín-Alvarez, Daniel Miguel, Fernando Villafañe|2020|Inorg.Chem.|59|11152|doi:10.1021/acs.inorgchem.0c01654
DOI: 10.5517/ccdc.csd.cc2458xj
title: CCDC 1971287: Experimental Crystal Structure Determination

description: Related Article: Beatriz Merillas, Elena Cuéllar, Alberto Diez-Varga, Tomás Torroba, Gabriel García-Herbosa, Sergio Fernández, Julio Lloret-Fillol, Jose M. Martín-Alvarez, Daniel Miguel, Fernando Villafañe|2020|Inorg.Chem.|59|11152|doi:10.1021/acs.inorgchem.0c01654
DOI: 10.5517/ccdc.csd.cc2458yk
title: CCDC 1971288: Experimental Crystal Structure Determination

description: Related Article: Beatriz Merillas, Elena Cuéllar, Alberto Diez-Varga, Tomás Torroba, Gabriel García-Herbosa, Sergio Fernández, Julio Lloret-Fillol, Jose M. Martín-Alvarez, Daniel Miguel, Fernando Villafañe|2020|Inorg.Chem.|59|11152|doi:10.1021/acs.inorgchem.0c01654
DOI: 10.5517/ccdc.csd.cc24vlrc
title: CCDC 1991773: Experimental Crystal Structure Determination

description: Related Article: Mrittika Roy, Isaac D. Diaz Morillo, Xian B. Carroll, Marilyn M. Olmstead, Alan L. Balch|2020|Cryst.Growth Des.|20|5596|doi:10.1021/acs.cgd.0c00793
DOI: 10.5517/ccdc.csd.cc24vlsd
title: CCDC 1991774: Experimental Crystal Structure Determination

description: Related Article: Mrittika Roy, Isaac D. Diaz Morillo, Xian B. Carroll, Marilyn M. Olmstead, Alan L. Balch|2020|Cryst.Growth Des.|20|5596|doi:10.1021/acs.cgd.0c00793
DOI: 10.5517/ccdc.csd.cc24vlwh
title: CCDC 1991777: Experimental Crystal Structure Determination

description: Related Article: Mrittika Roy, Isaac D. Diaz Morillo, Xian B. Carroll, Marilyn M. Olmstead, Alan L. Balch|2020|Cryst.Growth Des.|20|5596|doi:10.1021/acs.cgd.0c00793