cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9901061.v1
title: Region of Difference

description: RD analysis based on RD-Analyzer on MDRTB from Malaysia
DOI: 10.6084/m9.figshare.9901028.v1
title: Supplementary Material for: Elevated Serum Uric Acid and Self-Reported Heart Failure in US Adults: 2007–2016 National Health and Nutrition Examination Survey

description: <b><i>Introduction:</i></b> There is limited evidence examining the relationship between elevated serum uric acid (sUA) concentration and heart failure (HF) in United States (US) adults. The aim of the present study was to examine the association(s) between elevated sUA and HF using a nationally representative sample of US adults. <b><i>Methods:</i></b> The final sample with complete data for this analysis (<i>n</i> = 17,349) included men and women aged ≥40 years who participated in the 2007–2016 National Health and Nutrition Examination Survey. Self-reported diagnosis of HF was assessed via interview. Elevated sUA was defined as values &gt;6.0 mg/dL for women and &gt;7.2 mg/dL for men. Multivariable gender-stratified logistic regression was utilized to examine the odds of self-reported HF. <b><i>Results:</i></b> The estimated prevalence of HF was 3.9 and 3.4% among men and women, respectively. Age-adjusted analysis revealed significantly increased odds of HF in men (OR 2.79; 95% CI 2.15–3.84, <i>p</i> &lt; 0.01) and women (OR 3.24; 95% CI 2.37–4.44, <i>p</i> &lt; 0.01) with elevated sUA. This relationship remained statistically significant following adjustment for age, race, education, income, alcohol consumption, smoking status, blood pressure, diabetes, physical activity level, cholesterol, creatinine level, and body mass index in men (OR 1.70; 95% CI 1.13–2.57 <i>p</i> &lt; 0.05) and women (OR 1.74; 95% CI 1.18–2.58, <i>p</i> &lt; 0.05). <b><i>Conclusions:</i></b> In a representative sample of US adults, having an elevated sUA concentration was associated with significantly increased odds of HF when compared to adults with normal sUA.
DOI: 10.6084/m9.figshare.9901046.v1
title: NPC1L1-25hydroxycholesterol Complex

description: Varios sterols binding to NPC1L11) NPC1L1-25-hydroxycholesterol Complex.pdb<br>2) MMPBSA output from trajectory analysis3) Decompose analysis from trajectory analysis4) trajectory analysis: Backbone RMSD, B-factor, Gyration
DOI: 10.6084/m9.figshare.9900977
title: Supplementary Material for: Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid <b><i>Zaprionus indianus</i></b>

description: Previously, a novel cell type, the multinucleated giant hemocyte (MGH) was identified in the <i>ananassae</i> subgroup of Drosophilidae. These cells share several features with mammalian multinucleated giant cells, a syncytium of macrophages formed during granulomatous inflammation. We were able to show that MGHs also differentiate in <i>Zaprionus indianus</i>, an invasive species belonging to the <i>vittiger</i> subgroup of the family, highly resistant to a large number of parasitoid wasp species. We have classified the MGHs of <i>Z. indianus</i>as giant hemocytes belonging to a class of cells which also include elongated blood cells carrying a single nucleus and anuclear structures. They are involved in encapsulating parasites, originate from the lymph gland, can develop by cell fusion, and generally carry many nuclei, while possessing an elaborated system of canals and sinuses, resulting in a spongiform appearance. Their nuclei are all transcriptionally active and show accretion of genetic material. Multinucleation and accumulation of the genetic material in the giant hemocytes represents a two-stage amplification of the genome, while their spongy ultrastructure substantially increases the contact surface with the extracellular space. These features may furnish the giant hemocytes with a considerable metabolic advantage, hence contributing to the mechanism of the effective immune response.
DOI: 10.6084/m9.figshare.9900974
title: MDRTB Annotation Files

description: Genomic annotations of MDRTB from Malaysia
DOI: 10.6084/m9.figshare.9900977.v1
title: Supplementary Material for: Cellular Immune Response Involving Multinucleated Giant Hemocytes with Two-Step Genome Amplification in the Drosophilid <b><i>Zaprionus indianus</i></b>

description: Previously, a novel cell type, the multinucleated giant hemocyte (MGH) was identified in the <i>ananassae</i> subgroup of Drosophilidae. These cells share several features with mammalian multinucleated giant cells, a syncytium of macrophages formed during granulomatous inflammation. We were able to show that MGHs also differentiate in <i>Zaprionus indianus</i>, an invasive species belonging to the <i>vittiger</i> subgroup of the family, highly resistant to a large number of parasitoid wasp species. We have classified the MGHs of <i>Z. indianus</i>as giant hemocytes belonging to a class of cells which also include elongated blood cells carrying a single nucleus and anuclear structures. They are involved in encapsulating parasites, originate from the lymph gland, can develop by cell fusion, and generally carry many nuclei, while possessing an elaborated system of canals and sinuses, resulting in a spongiform appearance. Their nuclei are all transcriptionally active and show accretion of genetic material. Multinucleation and accumulation of the genetic material in the giant hemocytes represents a two-stage amplification of the genome, while their spongy ultrastructure substantially increases the contact surface with the extracellular space. These features may furnish the giant hemocytes with a considerable metabolic advantage, hence contributing to the mechanism of the effective immune response.
DOI: 10.6084/m9.figshare.9900857
title: AlignmentData

description: Alignment dataset for phylogenetic tree construction
DOI: 10.6084/m9.figshare.9900896
title: Machine Learning approach for Candida albicans Fluconazole Resistance detection using Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry

description: Peak intensity matrices used in the project : Machine Learning approach for <i>Candida albicans</i> Fluconazole Resistance detection using Matrix-Assisted Laser Desorption/Ionization Time-Of-Flight Mass Spectrometry
DOI: 10.6084/m9.figshare.9900851
title: Siljansfors tree-ring data

description: Ring width measurements from pine (Pinus sylvestris). <br>Siljansfors Research Park.<br>Lat: 60° 52' - 60° 55' NLong: 14° 19' - 14° 25' EM. a.s.l: 210-425 m<br>https://www.slu.se/en/departments/field-based-forest-research/experimental-forests/<br>
DOI: 10.6084/m9.figshare.9900857.v1
title: AlignmentData

description: Alignment dataset for phylogenetic tree construction
DOI: 10.6084/m9.figshare.9900974.v2
title: MDRTB Annotation Files

description: Genomic annotations of MDRTB from Malaysia
DOI: 10.6084/m9.figshare.9900974.v1
title: MDRTB Annotation Files

description: Genomic annotations of MDRTB from Malaysia
DOI: 10.6084/m9.figshare.9900476
title: MOESM1 of Transcriptome analysis of Plasmodium berghei during exo-erythrocytic development

description: Additional file 1: Table S1. RNA-seq data of different life cycle stages of P. berghei used in this study. Table S2. RNA-seq analysis: Raw sequencing counts per gene in the different life cycle stages. Table S3. Gene ontology (GO) term annotation of genes of the individual communities in the GCN. Table S4. P. berghei geneIDs of genes of the different communities in the GCN. Table S5. Genes preferentially expressed in developing EEF stages compared to developing EF stages. Table S6. Genes preferentially expressed in detached cells (DCs/merosomes) compared to erythrocytic schizonts. Table S7. Genes preferentially expressed in blood schizonts (22Â h) compared to EEF stages. Table S8. Genes preferentially expressed in blood schizonts (22Â h) compared to all other stages. Table S9. Genes preferentially expressed in detached cells (DCs/merosomes) compared to all other stages.
DOI: 10.6084/m9.figshare.9900473
title: MOESM2 of A general approach for retrosynthetic molecular core analysis

description: Additional file 2. A zip file containing a Jupyter Notebook with the exemplary CSAR analysis for the Akt2 dataset, as well as the data and secondary scripts required.
DOI: 10.6084/m9.figshare.9900476.v1
title: MOESM1 of Transcriptome analysis of Plasmodium berghei during exo-erythrocytic development

description: Additional file 1: Table S1. RNA-seq data of different life cycle stages of P. berghei used in this study. Table S2. RNA-seq analysis: Raw sequencing counts per gene in the different life cycle stages. Table S3. Gene ontology (GO) term annotation of genes of the individual communities in the GCN. Table S4. P. berghei geneIDs of genes of the different communities in the GCN. Table S5. Genes preferentially expressed in developing EEF stages compared to developing EF stages. Table S6. Genes preferentially expressed in detached cells (DCs/merosomes) compared to erythrocytic schizonts. Table S7. Genes preferentially expressed in blood schizonts (22Â h) compared to EEF stages. Table S8. Genes preferentially expressed in blood schizonts (22Â h) compared to all other stages. Table S9. Genes preferentially expressed in detached cells (DCs/merosomes) compared to all other stages.
DOI: 10.6084/m9.figshare.9900431
title: Supplementary Data

description: Raw data point for graphs. Figure 1d,e, and f. Figure 1g. Figure 1h. Figure 1i. Figure 1j. Figure 2b. Figure 3a. Figure 3b. Figure 4a. Figure 4b. Figure 7b,c, and g. Figure 7e, f, and h. Figure 8a, b, c, and d.
DOI: 10.6084/m9.figshare.9900470
title: MOESM1 of A general approach for retrosynthetic molecular core analysis

description: Additional file 1. Source code for getting core data.
DOI: 10.6084/m9.figshare.9900473.v1
title: MOESM2 of A general approach for retrosynthetic molecular core analysis

description: Additional file 2. A zip file containing a Jupyter Notebook with the exemplary CSAR analysis for the Akt2 dataset, as well as the data and secondary scripts required.
DOI: 10.6084/m9.figshare.9900422
title: Moved file. See description.

description: Moved file to Version 3 of original estimates CSV file, see here<br>
DOI: 10.6084/m9.figshare.9900470.v1
title: MOESM1 of A general approach for retrosynthetic molecular core analysis

description: Additional file 1. Source code for getting core data.
DOI: 10.6084/m9.figshare.9900431.v1
title: Supplementary Data

description: Raw data point for graphs. Figure 1d,e, and f. Figure 1g. Figure 1h. Figure 1i. Figure 1j. Figure 2b. Figure 3a. Figure 3b. Figure 4a. Figure 4b. Figure 7b,c, and g. Figure 7e, f, and h. Figure 8a, b, c, and d.
DOI: 10.6084/m9.figshare.9900386
title: Physical and chemical characteristics of soybean preserve as a function of maceration time and acetic acid

description: Abstract Food-type soybean, considered a functional and nutritious food, becomes an new alternative food in human nutrition, and its preserve is an option to the consumer market. The present study aims to verify the effect of maceration time of the grains and the acetic acid concentration in brine on the physical and chemical characteristics of a edible soybean preserves, and to evaluate the proximal composition, microbiological risk and sensory acceptance of the selected preserve. The methodology used was the response surface and the central composite rotational design. The presence of acetic acid in the brine was prejudicial to the quality of the edible soybean preserve - BRSMG 790A cultivar. The soybean preserve with the best characteristics was obtained with a maceration time of 100 minutes and without the addition of acetic acid. The product was microbiological safe, showed sensory acceptance and high nutritional value (15.5 g 100 g-1 of protein and 7.0 g 100 g-1 of lipid), free of trypsin inhibitor. The essential amino acids represented 17.2% of those in the dry grain, more than 50% the standard values proposed for the essential amino acids for children and adults. The selected preserve maintained 31.25% of the antioxidant activity of the grains and could be used as a viable technological option.
DOI: 10.6084/m9.figshare.9900386.v1
title: Physical and chemical characteristics of soybean preserve as a function of maceration time and acetic acid

description: Abstract Food-type soybean, considered a functional and nutritious food, becomes an new alternative food in human nutrition, and its preserve is an option to the consumer market. The present study aims to verify the effect of maceration time of the grains and the acetic acid concentration in brine on the physical and chemical characteristics of a edible soybean preserves, and to evaluate the proximal composition, microbiological risk and sensory acceptance of the selected preserve. The methodology used was the response surface and the central composite rotational design. The presence of acetic acid in the brine was prejudicial to the quality of the edible soybean preserve - BRSMG 790A cultivar. The soybean preserve with the best characteristics was obtained with a maceration time of 100 minutes and without the addition of acetic acid. The product was microbiological safe, showed sensory acceptance and high nutritional value (15.5 g 100 g-1 of protein and 7.0 g 100 g-1 of lipid), free of trypsin inhibitor. The essential amino acids represented 17.2% of those in the dry grain, more than 50% the standard values proposed for the essential amino acids for children and adults. The selected preserve maintained 31.25% of the antioxidant activity of the grains and could be used as a viable technological option.
DOI: 10.6084/m9.figshare.9900383
title: PREDICTION OF EFFICIENCY IN COLOMBIAN HIGHER EDUCATION INSTITUTIONS WITH DATA ENVELOPMENT ANALYSIS AND NEURAL NETWORKS

description: ABSTRACT This paper shows the results of a research of the application of data envelopment analysis (DEA) together with artificial neural networks (ANN) of higher education institutions in Colombia during the years 2011-2013, for the purpose of evaluating the technical efficiency of Colombian higher education institutions and subsequently carry out predictions, based on a group of management indicators. Information provided by the Ministry of National Education was used as data source. The results show that this two-stage approach provides the DEA with the predictive potential that it otherwise lacks, enhancing its evaluative qualities; this is also evident in the various research papers consulted. The results also show that 50% of the models built have correct classification rates of 64.58% and 58.33% for training and validation datasets, respectively.
DOI: 10.6084/m9.figshare.9900383.v1
title: PREDICTION OF EFFICIENCY IN COLOMBIAN HIGHER EDUCATION INSTITUTIONS WITH DATA ENVELOPMENT ANALYSIS AND NEURAL NETWORKS

description: ABSTRACT This paper shows the results of a research of the application of data envelopment analysis (DEA) together with artificial neural networks (ANN) of higher education institutions in Colombia during the years 2011-2013, for the purpose of evaluating the technical efficiency of Colombian higher education institutions and subsequently carry out predictions, based on a group of management indicators. Information provided by the Ministry of National Education was used as data source. The results show that this two-stage approach provides the DEA with the predictive potential that it otherwise lacks, enhancing its evaluative qualities; this is also evident in the various research papers consulted. The results also show that 50% of the models built have correct classification rates of 64.58% and 58.33% for training and validation datasets, respectively.
DOI: 10.6084/m9.figshare.9900422.v1
title: Updated bilateral international migration flow estimates for 200 countries (1990-1995 to 2010-2015) - based on IMS2019

description: Update of estimates of international migration flows from Abel & Cohen (2019) based on newly published International Migrant Stock data inputs by the United Nations and the most recent WPP (WPP2019).<br>A description of the changes in the estimates can be found here <br><br>Data Details:<br> <br>Row for each migration corridor - period combination (200 origins x 200 destinations x 5 periods = 200,000).<br>year0 - first year of five year periodorig - origin ISO three letter country codedest - destination ISO three letter country<br> Columns for estimates based on the following migration flow estimation methods:<b><br>Stock Differencing Approaches:</b><br><br>sd_drop_neg - see for example Beine, M., Docquier, F., & Özden, Ç. (2011). Diasporas. Journal of Development Economics, 95(1), 30–41. https://doi.org/10.1016/j.jdeveco.2009.11.004<br><br>sd_rev_neg - see for example Beine, M., & Parsons, C. R. (2015). Climatic Factors as Determinants of International Migration. The Scandinavian Journal of Economics, 117(2), 723–767. https://doi.org/10.1111/sjoe.12098 <br><b>Migration Rate Approach:</b><br><br>mig_rate - see Dennett, A. (2016). Estimating an Annual Time Series of Global Migration Flows - An Alternative Methodology for Using Migrant Stock Data. In Global Dynamics (pp. 125–142). Chichester, UK: John Wiley & Sons, Ltd. https://doi.org/10.1002/9781118937464.ch7 <br><b>Demographic Accounting Approaches:</b><br><br>da_min_open - see Abel, G. J. (2013). Estimating global migration flow tables using place of birth data. Demographic Research, 28(March), 505–546. https://doi.org/10.4054/DemRes.2013.28.18 <br>da_min_closed - see Abel, G. J. (2018). Estimates of Global Bilateral Migration Flows by Gender between 1960 and 2015. International Migration Review, <i>52</i>(3), 809–852. https://doi.org/10.1111/imre.12327 <br>da_pb_closed - see Azose, J. J., & Raftery, A. E. (2019). Estimation of emigration, return migration, and transit migration between all pairs of countries. Proceedings of the National Academy of Sciences, <i>116</i>(1), 116–122. https://doi.org/10.1073/PNAS.1722334116 <br>
DOI: 10.6084/m9.figshare.9900371
title: Establishing a standard for handmade Brazilian cassava flour from Baixada Cuiabana (Mato Grosso, Brazil) to support its processing and sale

description: Abstract The Baixada Cuiabana region contains the confluence of the Brazilian Savannah, Amazon and wetlands biomes. This region brings together small producers of cassava who prepare dry flour by hand, maintaining a bank of active ethno-varieties of this crop and that are of cultural, social, economic and genetic importance. This study aimed to establish a standard for the flour currently being processed and marketed. Thus, 26 samples were collected from seven municipalities of the region. At the time of this sampling, the predominant standard of the handmade cassava flour produced in Baixada Cuiabana was Dry group, Medium class, yellow-colour, of Types 1, 2 and 3. Using the Hunter Lab colour system, the predominant colour was found to be yellow with red or green tonality, with one sample artificial colorant. Consumers recognize granule size and colour as the main parameters that determine purchase of the product. Seven samples from four municipalities were classified as Out of Type, because they presented values in disagreement with legislation that could result in difficulties in valorisation and sale in the legal market.
DOI: 10.6084/m9.figshare.9900374
title: Alice in Wonderland syndrome: “Who in the world am I?”

description: ABSTRACT Alice in Wonderland syndrome (AIWS) is a paroxysmal, perceptual, visual and somesthetic disorder that can be found in patients with migraine, epilepsy, cerebrovascular disease or infections. The condition is relatively rare and unique in its hallucinatory characteristics. Objective: To discuss the potential pathways involved in AIWS. Interest in this subject arose from a patient seen at our service, in which dysmetropsia of body image was reported by the patient, when she saw it in her son. Methods: We reviewed and discussed the medical literature on reported patients with AIWS, possible anatomical pathways involved and functional imaging studies. Results: A complex neural network including the right temporoparietal junction, secondary somatosensory cortex, premotor cortex, right posterior insula, and primary and extrastriate visual cortical regions seem to be involved in AIWS to varying degrees. Conclusions: AIWS is a very complex condition that typically has been described as isolated cases or series of cases.
DOI: 10.6084/m9.figshare.9900374.v1
title: Alice in Wonderland syndrome: “Who in the world am I?”

description: ABSTRACT Alice in Wonderland syndrome (AIWS) is a paroxysmal, perceptual, visual and somesthetic disorder that can be found in patients with migraine, epilepsy, cerebrovascular disease or infections. The condition is relatively rare and unique in its hallucinatory characteristics. Objective: To discuss the potential pathways involved in AIWS. Interest in this subject arose from a patient seen at our service, in which dysmetropsia of body image was reported by the patient, when she saw it in her son. Methods: We reviewed and discussed the medical literature on reported patients with AIWS, possible anatomical pathways involved and functional imaging studies. Results: A complex neural network including the right temporoparietal junction, secondary somatosensory cortex, premotor cortex, right posterior insula, and primary and extrastriate visual cortical regions seem to be involved in AIWS to varying degrees. Conclusions: AIWS is a very complex condition that typically has been described as isolated cases or series of cases.
DOI: 10.6084/m9.figshare.9900422.v2
title: Updated bilateral international migration flow estimates for 200 countries (1990-1995 to 2010-2015) - based on IMS2019 and WPP2019

description: Update of estimates of international migration flows from Abel & Cohen (2019) based on newly published International Migrant Stock (IMS2019) data inputs by the United Nations and the most recent WPP (WPP2019).<br>A description of the changes in the estimates can be found here <br><br>Data Details:<br> <br>Row for each migration corridor - period combination (200 origins x 200 destinations x 5 periods = 200,000).<br>year0 - first year of five year periodorig - origin ISO three letter country codedest - destination ISO three letter country<br> Columns for estimates based on the following migration flow estimation methods:<b><br>Stock Differencing Approaches:</b><br><br>sd_drop_neg - see for example Beine, M., Docquier, F., & Özden, Ç. (2011). Diasporas. Journal of Development Economics, 95(1), 30–41. https://doi.org/10.1016/j.jdeveco.2009.11.004<br><br>sd_rev_neg - see for example Beine, M., & Parsons, C. R. (2015). Climatic Factors as Determinants of International Migration. The Scandinavian Journal of Economics, 117(2), 723–767. https://doi.org/10.1111/sjoe.12098 <br><b>Migration Rate Approach:</b><br><br>mig_rate - see Dennett, A. (2016). Estimating an Annual Time Series of Global Migration Flows - An Alternative Methodology for Using Migrant Stock Data. In Global Dynamics (pp. 125–142). Chichester, UK: John Wiley & Sons, Ltd. https://doi.org/10.1002/9781118937464.ch7 <br><b>Demographic Accounting Approaches:</b><br><br>da_min_open - see Abel, G. J. (2013). Estimating global migration flow tables using place of birth data. Demographic Research, 28(March), 505–546. https://doi.org/10.4054/DemRes.2013.28.18 <br>da_min_closed - see Abel, G. J. (2018). Estimates of Global Bilateral Migration Flows by Gender between 1960 and 2015. International Migration Review, <i>52</i>(3), 809–852. https://doi.org/10.1111/imre.12327 <br>da_pb_closed - see Azose, J. J., & Raftery, A. E. (2019). Estimation of emigration, return migration, and transit migration between all pairs of countries. Proceedings of the National Academy of Sciences, <i>116</i>(1), 116–122. https://doi.org/10.1073/PNAS.1722334116 <br>