cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hj6f109/1
title: Blueberry_data_combined

description: On-crop specimen data and observations and herbaceous enhancement floral and specimen data for blueberry sites.
DOI: 10.5061/dryad.j6823nt/5
title: Pseudo-reference genomes for revised species
DOI: 10.5061/dryad.kt056q7/1
title: Dataset 1

description: Includes three spreadsheets with the gene expression levels of two orchid transcriptome analyzed in this study.
DOI: 10.5061/dryad.nq68420/1
title: R code and data for iSSA

description: Includes grizzly bear covariate data and grizzly bear sex and reproductive status data, along with R code for running iSSA and beta coefficient bootstrap procedure
DOI: 10.5061/dryad.r26t61c/1
title: Experimental data
DOI: 10.5061/dryad.s70544p/1
title: Data used in trend modelling

description: Data used in trend modeling - please see readme file for descriptions of variables and additional information
DOI: 10.5061/dryad.t153690/17
title: Fig_2b_c_cell-free

description: This file contains the data from Fig 2. mVenus fluorescence intensities were measured with a plate reader. mVenus was expressed from a purified plasmid in E. coli based cell extract and purified sgRNA, asgRNA and/or dCas9 were supplemented.
DOI: 10.5061/dryad.t153690/18
title: Fig_2d_RT-qPCR

description: This zip-file contains the following files:
"ftsZ -dRFU.xls" - contains the data for the melt curve in Figure S3 (inset).
"Cq ftsZ.xls" - contains the data shown in Figure S3A.
"Cq ref genes.xls" - contains the data used to normalize the data shown in Figure 2D.
"ftsZgenePos.xls" - this contains the position list and sample names for the data in "cq ftsZ" and "ftsZ -dRFU". 
"RefgenesPos.xls" - this contain the position list and sample names for the data in "cq ref genes".
DOI: 10.5061/dryad.t153690/19
title: Fig_3a_Images

description: This file contains the phase-contrast microscopy images of the induced cells at different time points used for the histogram of the cell lengths shown in Fig. 3a.  The raw data for Fig. 3a are in the excel file “Fig_3a_CellLength.xlsx”.
DOI: 10.5061/dryad.104g3d0/10
title: fastsimcoal_data_and_models

description: Joint SFS from RAD data and models used in fastsimcoal analysis of site-frequency spectrum.
DOI: 10.5061/dryad.104g3d0/11
title: final_rad_lift.vcf

description: RAD-seq variant call format for Japan Sea, Pacific Ocean and Atlantic Ocean individuals.
DOI: 10.5061/dryad.104g3d0/12
title: genome_10kb_windows_data

description: 10Kb genome window estimates of Fst, dxy, gmin, pi and tajima's D.
DOI: 10.5061/dryad.104g3d0/13
title: Gmin_fd_dxy_sliding_windows_script

description: A python script for estimating dxy, fd and Gmin. Modified version of script available here: https://github.com/johnomics/Martin_Davey_Jiggins_evaluating_introgression_statistics/blob/master/egglib_sliding_windows.py
DOI: 10.5061/dryad.104g3d0/14
title: gmin_bias_10k

description: Sliding window 10Kb Gmin analysis with minimimum haplotype pairs identified in each window. This was done to check that there is no bias (i.e. valleys are not caused by introgressed haplotypes in the same window).
DOI: 10.5061/dryad.104g3d0/8
title: abc_sampled_loci.fasta

description: Observed loci sampled from the stickleback genome used for ABC analysis. Stored as a fasta file (gzip compressed)
DOI: 10.5061/dryad.104g3d0/9
title: genome_sampling_Rscripts

description: Set of R scripts to randomly sample the genome using a fasta index file. See Readme file for more details.
DOI: 10.5061/dryad.20h4r/1
title: BowersTimberlake-RSOS-171448-data

description: All data reported in Bowers and Timberlake, RSOS-171448, as described therein. Page 1 contains the data from the quantitative tests, in 10-second bins; subsequent pages show the highlighted models along with the relevant data, in 2-second bins.
DOI: 10.5061/dryad.22q68sq/1
title: Waring_et_al_NewPhyt_biogeochemical_data_for_Dryad
DOI: 10.5061/dryad.3rq8q88/1
title: Replicate 'm'; FASTQ data for selection rounds 0-4

description: This archive holds FASTQ-formatted sequencing data from replicate 'm' (from May, repl. 1 of 2) of a selection for GTP-binding aptamers; it contains 3 files, each with sequences from 1 or 2 rounds of the selection. See README.txt for more information.
DOI: 10.5061/dryad.3rq8q88/2
title: Replicate 'j'; FASTQ data for selection rounds 0-4

description: This archive holds FASTQ-formatted sequencing data from replicate 'j' (from July, repl. 2 of 2) of a selection for GTP-binding aptamers; it contains 2 files, each with sequences from 2 or 3 rounds of the selection. See README.txt for more information.
DOI: 10.5061/dryad.3rq8q88/3
title: Selection Pool Statistics

description: This archive includes 6 files which contain statistics regarding the first (May) and second (July) replicate selection pools, including transition probabilities (used to model the selection pools) and the frequency of 5’ and 3’ hexamers (used to correct ligation bias).  See README.txt for more information.
DOI: 10.5061/dryad.3rq8q88/4
title: Fitness Landscapes

description: This MS Excel document includes two spreadsheets, each containing the fitness landscape from one of the two replicate selections (May and July). In each landscape, fitness peaks are collections of related sequences and their associated fitness values. Fitness is derived from sequence abundance after correcting for: sequencing errors, bias introduced by sequencing adapter ligation, and non-uniform sequence distribution in the initial pool. Each sequence is listed along with the following information: peak rank, sequence rank (within its peak), label (indicating that peak's rank in both replicates), fitness value (with standard deviation), and edit distance from the peak center. Alignments for each peak are also given. Fitness peaks are presented in descending order of fitness (measured at the peak center), as are sequences within each peak.
DOI: 10.5061/dryad.4kn5j5d.1
title: Data from: Signatures of microevolutionary processes in phylogenetic patterns
DOI: 10.5061/dryad.4kn5j5d.1/1.1
title: Individual-based model

description: The code for run simulations based on the model presented in the paper.
DOI: 10.5061/dryad.4kn5j5d.1/2.1
title: input

description: An example of input data to run the ibm.f90 code.
DOI: 10.5061/dryad.4kn5j5d.1/3.1
title: SM_Costa-SysBio_2017_SysBio_review

description: Supplementary Material
DOI: 10.5061/dryad.4kn5j5d.2/3.2
title: SM_Costa-SysBio_2017_SysBio_review

description: Supplementary Material
DOI: 10.5061/dryad.5542pr8/2
title: Single-gene datasets

description: These are the alignments of each of the six loci used in the study. These files have been run in MrBayes v3.2.3.
DOI: 10.5061/dryad.5542pr8/3
title: BEAST xml files

description: These are three relevant files for time-calibration analyses of Odontomachus. The multi-locus alignment with one specimen per species is in nexus format, whereas two xml files can be found, one following the calibration density approach (minimum ages of fossils) and the second following the Fossilized Birth Death model.
DOI: 10.5061/dryad.5542pr8/4
title: BioGeoBEARS

description: These are all relevant files to run the BioGeoBEARS R script available at http://phylo.wikidot.com/biogeobears#toc31. The input files were used for biogeographical analyses of Odontomachus, including stochastic mapping and the the trait-dependent biogeography model.
DOI: 10.5061/dryad.5542pr8/5
title: Sampling localities

description: Sampling localities information
DOI: 10.5061/dryad.584g6qg/3
title: CensusData Survival Analysis

description: Census data used for the survival analysis. Columns: ID (bird ring); Birth (birth year); census data; sex (F = female; M = male); MC1R (II = ho for the rufous allele; VI = he; VV = ho for the white allele); status (Res = resident/born inside the study area; Imm = immigrant/born outside the study area).
DOI: 10.5061/dryad.5g0mr64/1
title: WaringandHawkes_precip_exclusion_field_data
DOI: 10.5061/dryad.609bp7m/1
title: Online Supplement Neurology 14Jul2018 - Clean Copy

description: Contains eTables 1-19, eFigures 1-7
DOI: 10.5061/dryad.6db84gg/1
title: Fragmentation and bee visitors of tropical rainforest trees in Australia

description: This file contains all of the data used in this paper. The file contains five Excel sheets. The first is a summary of the contents of each sheet and the remaining four sheets are raw data and metadata files. Data in this file include abundance, site and trait data.
DOI: 10.5061/dryad.6j58m7g/1
title: Compressed berk1_R1_.fastq

description: Compressed ddRAD library
DOI: 10.5061/dryad.6j58m7g/2
title: Compressed berk1_R2_.fastq

description: Compressed ddRAD library
DOI: 10.5061/dryad.8nm8r6s/1
title: Dryad Data

description: DESCRIPTIONS OF RDATA OBJECTS: "'obs.dryad' object description: Each row is unique and indicates each visit by each individual to a nestbox on each day. Columns are: 'PIT'= the PIT tag (or RFID tag) identification code for that bird, 'Date'= Year-Month-Day d, 'Unit'=the unique identifier code for the nestbox RFID logger, 'Sex'= M for male or F for female, 'Age'= 5 for juvenile or 6 for adult (as per BTO scoring), 'Species'= the species of the bird (all great tits - Parus major) , 'Breeding'= whether a bird was recorded breeding that year (B) or not recorded breeding (NB), 'LD'= the lay date of the first egg of this bird (days since April 1st), 'Day'= the day of this visit by this individual to this nestbox (days since Feb 1st), 'diff'= the number of days difference between the day of this visit by this bird to this box and the day it laid its first egg (for non-breeders, the average lay date is used), 'box'= the name of the box the bird visited, 'brebox'= the name of the box the bird bred in, 'breunit'= the unit code of the box the bird bred it. Please email joshua.firth@zoo.ox.ac.uk with any questions"   and       "'bre.dryad' object description: Each row is unique and indicates a breeding record for each bird that year. Columns are: 'PIT'= the PIT tag (or RFID tag) identification code for that bird, 'SEX'= M for male or F for female, 'AGE2012'= 5 for juvenile or 6 for adult (as per BTO scoring) that year, 'BOX2012'= the name of the box the bird bred in that year, 'LD'= the lay date of the first egg of this bird (days since April 1st), 'NF'= the number of chicks fledged, 'CS'= the clutch size, 'WING'= bird wing length, 'WT'= bird weight, 'TARSUS'= bird tarsus length. Please email joshua.firth@zoo.ox.ac.uk with any questions"
DOI: 10.5061/dryad.92t4802/1
title: Supplementary Data

description: Data for the paper, which contains a number of workbooks: 1) The whisker and locomotion tracking measures on a flat floor; 2) The whisker and locomotion tracking measures on an inclined floor; 3) The distance and timings between the nose and foot placements; 4) Calibrated measurements of head and body. All descriptions of the data can be found in the paper. If you have any queries, please contact the contacting author - Dr Robyn Grant.
DOI: 10.5061/dryad.bd55173/2
title: original test data

description: The data is the original data of the test process, which can be opened by Excel software.
DOI: 10.5061/dryad.bg8s00p/1
title: Chuanrong_Zhong_The_Data_of_RSOS-180610.R1.csv
DOI: 10.5061/dryad.cn20jv8/10
title: Video_S3_Punishment

description: Movie S3: Punishment Task. E1 places a large tray of food on a table in front of the chimpanzees; E2 sits across from the chimpanzee at a collapsible wing of the table held up by a removable leg. E1 previously threaded a rope attached to this leg into the chimpanzee’s room. After 5s, E2 steals the tray of food from the chimpanzee and pretends to eat the food. Here, the chimpanzee collapses the table by using the rope to pull out the removable leg from underneath the table wing.
DOI: 10.5061/dryad.cn20jv8/11
title: Video_S4_Discounting

description: Movie S4: Temporal Discounting Task. The experimenter places the smaller, immediately-available reward (one raw banana slice) on the left and the larger, delayed reward (three raw slices, available after one minute) on the right, with side assignment counterbalanced across trials. Prior to choice trials, chimpanzees experienced the associated quantities and delays in exposure trials with only one option available at a time. Here, the chimpanzee chooses the smaller, immediate reward in the first clip, and the larger, delayed reward in the second clip.
DOI: 10.5061/dryad.cn20jv8/12
title: Video_S5_Go-No-Go

description: Movie S5: Go/No-Go Task. The experimenter places a piece of food on the far end of the table (out of the chimpanzee’s reach) and an object cuing the chimpanzee as to whether it is “go” or “no-go” trial in the center of the table, near the chimpanzee. If chimpanzees emit a response to the “go” object (here, a white overturned cup) by touching it, E gives them the food. In contrast, on trials where E presents the “no-go” option (here an overturned orange container, with cues counterbalanced across chimpanzees), if chimpanzees emit a response, E throws the food away. Here, the chimpanzee emits a response to both cue types, but hesitates before the “no-go” cue.
DOI: 10.5061/dryad.cn20jv8/13
title: Video_S6_Social-Responsivity

description: Movie S6: Social Responsivity Task. Across eight distinct trials, chimpanzees were presented with four social and four non-social stimuli. In each trial, E1 placed a stimulus on a testing table, while E2 initially centered the chimpanzee at a distance 2m away. E2 then left when the trial started, and the chimpanzees’ latency to approach the stimulus was examined (within a trial lasting 30s). Here, the chimpanzee was slower to approach a person and relatively faster to approach a novel object placed on the table.
DOI: 10.5061/dryad.cn20jv8/7
title: Rosati_DiNicola_Buckholtz_Task-Comparisons

description: Summary data of performance across tasks; key for variable codes included as a separate tab in the file.
DOI: 10.5061/dryad.cn20jv8/8
title: Video_S1_Donation

description: Movie S1: Resource Donation Task. Chimpanzees chose between a prosocial option that provided food to themself and another individual, and a selfish option that provided food only to themself. Experimenter 1 (E1) sat to the side of the table and distributed the food (with side assignment for the options counterbalanced across trials), whereas E2 (the recipient) sat across from the chimpanzee. E2 could not access the food due to an additional grate between them and table, but they indicated their desire for the prosocial option by reaching for it effortfully through the grate. Here, the chimpanzee first selects the selfish option and then the prosocial option.
DOI: 10.5061/dryad.cn20jv8/9
title: Video_S2_Helping

description: Movie S2: Instrumental Helping Task. E1 plays with a stick when E2 approaches and tries to take the stick; after a struggle, E2 steals the stick and tosses it into the chimpanzee’s room. For up to 30s, E1 reaches for the stick and makes an effortful noise without interacting with the chimpanzee. If the chimpanzee does not give them the object during that time, E1 then switches to directly recruiting the chimpanzee by calling their name and alternating gaze direction between the chimpanzee and stick for up to another 30s. Here, the chimpanzee gives E1 the stick in the first half of the trial.
DOI: 10.5061/dryad.f6sj385/1
title: Supplemental data

description: e table 1, 2 and figure one. The supplemental data includes detailed information on the statistical models chosen and model fit as well as yearly comparisons between mutation carriers and non-carriers across the estimated years of symptom onset (EYO).
DOI: 10.5061/dryad.gd2jc7f/1
title: Schilling et al_data_for_Dryad
DOI: 10.5061/dryad.h78n6s3/1
title: Stem-elongation

description: Growth and morphological parameters of wheat recorded at stem-elongation (DC31).
DOI: 10.5061/dryad.hj6f109/2
title: Cherry_data_combined

description: On-crop specimen and observation and herbaceous enhancement floral and specimen data for cherry sites.
DOI: 10.5061/dryad.hj6f109/3
title: Pollen_diet_data

description: Pollen dietary data for important wild bee pollinator species for blueberry and cherry in Michigan.
DOI: 10.5061/dryad.k6gf1tf/1
title: A1_matrix

description: Abundance data of prey taxa (family level) collected at the study site
DOI: 10.5061/dryad.k6gf1tf/10
title: Zeale_ZOTUS_Sequences

description: Clustered to zero-radius OTUs (ZOTUs) using USEARCH algorithm.
DOI: 10.5061/dryad.k6gf1tf/2
title: A2_matrix

description: Presence/absence data of prey taxa (family level) collected at the study site
DOI: 10.5061/dryad.k6gf1tf/3
title: B1_matrix

description: Spider gut content data and predator traits; information of detected prey in individual wolf spiders and individual predator traits
DOI: 10.5061/dryad.k6gf1tf/4
title: B2_matrix

description: Spider gut content data; information on detected prey in mean number of wolf spiders per plot and date
DOI: 10.5061/dryad.k6gf1tf/5
title: C_matrix

description: Prey taxa traits
DOI: 10.5061/dryad.k6gf1tf/6
title: D_matrix

description: Environmental data
DOI: 10.5061/dryad.k6gf1tf/7
title: README

description: This file explains all variables in the datasets that accompany:

Assessing changes in arthropod predator-prey interactions through DNA-based gut content analysis – variable environment, stable diet
submitted to Molecular Ecology

contact: Bernhard Eitzinger nanuuto@gmail.com
DOI: 10.5061/dryad.k6gf1tf/8
title: Command pipeline used for bioinformatics

description: The file contains all the commandds used in this study to generate the final data. The bioinformatics was carried out at servers on CSC - IT Center for SCience in Finland .
DOI: 10.5061/dryad.kc5b8/1
title: Brassicales Illumina data and Final Alignment

description: The directory contains the raw illumina data (*.fastq) for each of the species plus the final alignment titled 'V4 - Brassicales Plastid CDS' with a 'Datamatrix-ID' file to decode each fasta sequence.
DOI: 10.5061/dryad.mg4nc21/1
title: DRYAD_CONTINA_IBIS_2018_submitted

description: DNA microsatellites - 13 loci
DOI: 10.5061/dryad.p9f5160/1
title: Shadehouse seedling data

description: Data on plant biomass and delta 15N values for seedlings grown in full-factorial light x soil nitrogen shadehouse experiment. Experiment duration: July 2015 - Jan 2016.
DOI: 10.5061/dryad.pc5gc05/1
title: Body Shape Means

description: Body shapes (means) of all the Goodeidae, 2-dimensional landmark data.
DOI: 10.5061/dryad.pc5gc05/2
title: Table S2

description: Museum catalog numbers for the landmark data.
DOI: 10.5061/dryad.pc5gc05/3
title: TableS1

description: Genbank information for the taxa used in the chronogram.
DOI: 10.5061/dryad.pc5gc05/4
title: Head Shape Means

description: Head shape (means) for the 2-dimensional landmark data.
DOI: 10.5061/dryad.pc5gc05/5
title: GoodeidTree_Beast

description: Nexus file for Goodeidae tree used in comparative analyses.
DOI: 10.5061/dryad.pc5gc05/6
title: R Code for Anaylses_Goodeidae

description: Code for analyses used in R-package Geomorph. All coding was done in the program TinnR.
DOI: 10.5061/dryad.t153690/20
title: Fig_3b_Time-series

description: The phase-contrast bright field images of the data in Fig. 3b. There is a separate file each of the 8 different microscopy stage position. The bacteria in the microfluidic traps at the different microscopy stage positions are exposed to different IPTG/aTc concentrations. An image is taken every 10 minutes from the time point of CRISPRi induction for a total of 100 minutes. The analyzed data is listed in the file "Fig_3_Microfluidics_Cell_length.xlsx".
DOI: 10.5061/dryad.t153690/21
title: Fig_4b_Images

description: Data from Fig 4b. Cell length were measured with the help of NIS-Elements from Nikon from microscopy images. The cells were pipetted from a liquid culture on to a glass slide under the microscope at different time points. Analyzed cell length are listed in file "Fig4_SwitchBach_Boxplot.xlsx".
DOI: 10.5061/dryad.t153690/22
title: Fig_4c_FlowCytoData

description: Flow cytometry data of bacteria being switched to filamentous growth and back to normal growth. Here forward-scattered light (FSC), side-scattered light (SSC) and FL1 (mVenus fluorescence intensity) were measured.
DOI: 10.5061/dryad.t153690/23
title: Fig_5a_SwitchBack_Microfluidics

description: This file contains the data displayed in Fig. 5A and S8. This includes the number of bacteria in the microfluidic traps and the time taken until the first division event after the removal of the CRISPRi inducers.
DOI: 10.5061/dryad.t153690/24
title: Fig_S2_cell-free

description: This file contains the file "Fig_S2_cell-free" which contains the fluorescence intensity values and mVenus concentration from plate reader experiments using purified DNA, dCas9, sgRNA and anti-sgRNA in the PUREexpress and in the homemade cell-free expression system supplemented with T7 RNAP.
DOI: 10.5061/dryad.t153690/25
title: Fig_S6_PlateReader

description: Data from Fig. S5. The absorbance and fluorescence intensity  for bacteria with different inducer concentrations was measured for three technical replicates in a plate reader.
DOI: 10.5061/dryad.t153690/26
title: Fig_5a_43Ind_SwitchBack_Strategy_i

description: The microscopy images of the data in Fig. 5a for the following condition: 2 hours of CRISPRi induction (43% induction level) followed by inducers removal in the new medium. There are 35 microscopy stage positions with three channels each: phase-contrast bright field, mVenus, mRFP. The images were binned (2x2).
DOI: 10.5061/dryad.t153690/27
title: Fig_5a_43Ind_SwitchBack_Strategy_iii

description: The microscopy images of the data in Fig. 5a for the following condition: 2 hours of CRISPRi induction (43% induction level) followed by inducers removal and the addition of 60 nM of AHL in the new medium. There are two data sets with three channels each: phase-contrast bright field, mVenus, mRFP. Data set 1 has 6 microscopy stage positions and data set 2 has 40 microscopy stage positions. The images were binned (2x2).
DOI: 10.5061/dryad.tt481j7/1
title: BSPM of PVC Patients
DOI: 10.17632/b49cdvmfb7.1
title: Data for: INTRANASAL OSTEOSARCOMA IN DOG – CASE REPORT

description: Abstract: Osteosarcoma is the most common bone tumor in dogs. The usual sites are the axial and the appendicular skeleton. However, the involvement of the paranasal sinuses and the nasal cavity is considered extremely rare. The present study describes a six-year-old, female, mongrel dog with a mass located in the right nasal cavity and 90-days of evolution. Radiographic, rhinoscopy and computed tomography findings suggested the presence of an intranasal tumor. The histopathological examination associated with clinical and imaging findings allowed to define the presence of osteosarcoma in the nasal cavity. The patient had an overall survival time of 12 months after diagnosis. Keywords: Bone tumor, dog, neoplasia, veterinary pathology.
DOI: 10.17632/twxc76zrct.1
title: Data for: Impact of European Chemicals Regulation on the industrial use of plasticizers and patterns of substitution in Scandinavia

description: Supplementary information to the article Impact of chemicals regulation: Analysis of industrial use data of plasticizers and patterns of substitution in Scandinavia holding: - Table: Identification of water relevant SVHC (wrSVHC) - Table: Time trends of industrial use data for wrSVHC in Sweden [t] - Table: Selection of persistent, mobile, organic chemicals (PMOCs) - Table: Time trends of industrial use data of PMOCs for Sweden [t] - Table: Policy framework analysis indicating the regulation status PMOCs and wrSVHC. - Table: Policy frameworks considered - Figure: Plasticizer use [t] in Scandinavia for highly used plasticizers from 2000 to 2014 - Table: Chemical hazard assessment: Assignment of hazard statements to toxic impact classes
DOI: 10.17632/w9k8hxd34t.2
title: Data for: Phase-Space Wavepacket Dynamics of Internal Conversion via Conical Intersection: Multi-State Quantum Fokker-Planck Equation Approach

description: Detailed derivation of equations in "Phase-Space Wavepacket Dynamics of Internal Conversion via Conical Intersection: Multi-State Quantum Fokker-Planck Equation Approach"