cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc26srzr
title: CCDC 2049595: Experimental Crystal Structure Determination

description: Related Article: Xin Li, Deping Xiu, Junjie Shi, Jiaran Miao, Yingying Yu, Huihua Song, Jin Lin, Qi Feng, Haitao Yu|2022|Spectrochim.Acta,Part A|265|120367|doi:10.1016/j.saa.2021.120367
DOI: 10.6084/m9.figshare.15167406
title: Registries performance CCAA NICSMORU 13-08-21

description: This is the census data for CCAA NICSMORU describing patients number of patients entering ICU and the number recorded in our registry
DOI: 10.5517/ccdc.csd.cc207mnk
title: CCDC 1854378: Experimental Crystal Structure Determination

description: Related Article: Sheetal B. Margankop, Ravindra R. Kamble, Madivalagouda S. Sannaikar, Praveen K. Bayannavar, S. Madan Kumar, Sanjeev R. Inamdar, Arunkumar M. Shirahatti, Saleem M. Desai, D. Joshi Shrinivas|2022|J.Mol.Struct.|1248|131442|doi:10.1016/j.molstruc.2021.131442
DOI: 10.6084/m9.figshare.15167406.v2
title: Registries performance CCAA NICSMORU 13-08-21

description: This is the census data for CCAA NICSMORU describing patients number of patients entering ICU and the number recorded in our registry
DOI: 10.5281/zenodo.5521512
title: Azimuth Reference - Human BMMC

description: Here we provide the reference data files used to run the Azimuth Human BMMC reference web application. For a full description of the reference data structure, please see the wiki at https://github.com/satijalab/azimuth/wiki/Azimuth-Reference-Format.
DOI: 10.5281/zenodo.5521511
title: Azimuth Reference - Human BMMC

description: Here we provide the reference data files used to run the Azimuth Human BMMC reference web application. For a full description of the reference data structure, please see the wiki at https://github.com/satijalab/azimuth/wiki/Azimuth-Reference-Format.
DOI: 10.6084/m9.figshare.16660858
title: Minimal dataset

description: minimal dataset from brain recordings
DOI: 10.6084/m9.figshare.16660927.v1
title: deepFlashLeftBothHierarchical.h5

description: weights
DOI: 10.6084/m9.figshare.16660927
title: deepFlashLeftBothHierarchical.h5

description: weights
DOI: 10.6084/m9.figshare.16660930.v1
title: deepFlashRightBothHierarchical.h5

description: weights
DOI: 10.6084/m9.figshare.16660930
title: deepFlashRightBothHierarchical.h5

description: weights
DOI: 10.6084/m9.figshare.16660933
title: deepFlashRightT1Hierarchical.h5

description: u-net<br>
DOI: 10.6084/m9.figshare.16660933.v1
title: deepFlashRightT1Hierarchical.h5

description: u-net<br>
DOI: 10.6084/m9.figshare.16660936
title: deepFlashLeftT1Hierarchical.h5

description: u-net weights<br>
DOI: 10.6084/m9.figshare.16660936.v1
title: deepFlashLeftT1Hierarchical.h5

description: u-net weights<br>
DOI: 10.5281/zenodo.5484779
title: Niobium speciation in minerals revealed by L2,3-edges XANES spectroscopy

description: This metadata file gathers crystal-chemical, crystallographic and spectroscopic raw data supporting the manuscript entitled “Niobium speciation in minerals revealed by L<sub>2,3</sub>-edges XANES spectroscopy“ submitted to <em>American Mineralogist</em>. <strong>EMP_natural_references:</strong> spreadsheet compiling crystal-chemical data of the Nb geological references (columbite, fluorcalciopyrochlore, hydropyrochlore, latrappite, niocalite) obtained from electron microprobe analysis (EMP_crystal_chemistry_references.xls). <em>Analyses were conducted on a CAMECA SX Five electron at the CAMPARIS facility (Sorbonne Universite, Paris). Two to seven spots were probed for each sample at 15 kV and 40 nA for the major elements and at 15 kV and 299 nA for minor and : trace elements. WDS analyses were performed using the following standards: albite for Na, diopside for Mg, Si and Ca, orthoclase for Al and K, MnTiO<sub>3</sub> for Mn and Ti, hematite for Fe, BaSO<sub>4</sub> for Ba; topaze for F, LiNbO<sub>3</sub> for Nb, metallic Ta for Ta, SrSi for Sr, zircon for Zr, galena for Pb, monazite for Th, uraninite for U, and REE-bearing silicates for for Y, La, Ce, Nd.</em> <strong>XANES_spectra: </strong>raw X-ray absorption data files (.dat). There are either one or two files per sample (_01/_02). Amounts of Nb in Ti oxide samples are mentionned in file titles (Nb1pc/Nb5pc/Nb10pc). <em>Niobium L<sub>2,3-</sub>edges XANES spectra were recorded on the LUCIA beamline of the SOLEIL synchrotron radiation facility (Gif-sur-Yvette, France) operating with a storage ring current of 450 mA and energy of 2.75 GeV. A double crystal Si(111) monochromator crystal was used with an energy resolution of 0.25 eV at 2400 eV and calibrated at this energy using Nb<sub>2</sub>O<sub>5</sub>.</em> <strong>XRD_geological_references:</strong> spreadsheet compiling crystal-cell parameters obtained from the reduction of single-crystal XRD data (geological_samples_crystal_cell_data.xls). The number of reflections indexed and teta range of measurement are specified. <em>An Agilent Diffraction Xcalibur-S diffractometer equipped with a Sapphire CCD-detector with Mo K-α<sub>1</sub> radiation (λ = 0.71073 Å, graphite monochromator) was used at room temperature. Data reduction, cell refinement and space group determination were performed using CrysAlisPro software. </em> <strong>XRD_synthetic_samples:</strong> XRD data obtained for the synthetic samples (.csv/.xrdml). Amounts of Nb in Ti oxide samples are mentionned in file titles (Nb1pc/Nb5pc/Nb10pc). <em>X-ray diffraction was performed with a PANALYTICAL X’pert Pro MPD diffractometer. Measurements were carried out in Bragg-Brentano geometry using a Co K-α anode in order to minimize the X-ray absorption of Fe in iron oxide synthetic compounds. Data were recorded with an X’Celerator detector between 3 ° 2θ and 90 ° 2θ with 0.017 ° steps. Incident beam mask was fixed at 20 mm and soller slits at 0.04 rad.</em>
DOI: 10.5281/zenodo.5484778
title: Niobium speciation in minerals revealed by L2,3-edges XANES spectroscopy

description: This metadata file gathers crystal-chemical, crystallographic and spectroscopic raw data supporting the manuscript entitled “Niobium speciation in minerals revealed by L<sub>2,3</sub>-edges XANES spectroscopy“ submitted to <em>American Mineralogist</em>. <strong>EMP_natural_references:</strong> spreadsheet compiling crystal-chemical data of the Nb geological references (columbite, fluorcalciopyrochlore, hydropyrochlore, latrappite, niocalite) obtained from electron microprobe analysis (EMP_crystal_chemistry_references.xls). <em>Analyses were conducted on a CAMECA SX Five electron at the CAMPARIS facility (Sorbonne Universite, Paris). Two to seven spots were probed for each sample at 15 kV and 40 nA for the major elements and at 15 kV and 299 nA for minor and : trace elements. WDS analyses were performed using the following standards: albite for Na, diopside for Mg, Si and Ca, orthoclase for Al and K, MnTiO<sub>3</sub> for Mn and Ti, hematite for Fe, BaSO<sub>4</sub> for Ba; topaze for F, LiNbO<sub>3</sub> for Nb, metallic Ta for Ta, SrSi for Sr, zircon for Zr, galena for Pb, monazite for Th, uraninite for U, and REE-bearing silicates for for Y, La, Ce, Nd.</em> <strong>XANES_spectra: </strong>raw X-ray absorption data files (.dat). There are either one or two files per sample (_01/_02). Amounts of Nb in Ti oxide samples are mentionned in file titles (Nb1pc/Nb5pc/Nb10pc). <em>Niobium L<sub>2,3-</sub>edges XANES spectra were recorded on the LUCIA beamline of the SOLEIL synchrotron radiation facility (Gif-sur-Yvette, France) operating with a storage ring current of 450 mA and energy of 2.75 GeV. A double crystal Si(111) monochromator crystal was used with an energy resolution of 0.25 eV at 2400 eV and calibrated at this energy using Nb<sub>2</sub>O<sub>5</sub>.</em> <strong>XRD_geological_references:</strong> spreadsheet compiling crystal-cell parameters obtained from the reduction of single-crystal XRD data (geological_samples_crystal_cell_data.xls). The number of reflections indexed and teta range of measurement are specified. <em>An Agilent Diffraction Xcalibur-S diffractometer equipped with a Sapphire CCD-detector with Mo K-α<sub>1</sub> radiation (λ = 0.71073 Å, graphite monochromator) was used at room temperature. Data reduction, cell refinement and space group determination were performed using CrysAlisPro software. </em> <strong>XRD_synthetic_samples:</strong> XRD data obtained for the synthetic samples (.csv/.xrdml). Amounts of Nb in Ti oxide samples are mentionned in file titles (Nb1pc/Nb5pc/Nb10pc). <em>X-ray diffraction was performed with a PANALYTICAL X’pert Pro MPD diffractometer. Measurements were carried out in Bragg-Brentano geometry using a Co K-α anode in order to minimize the X-ray absorption of Fe in iron oxide synthetic compounds. Data were recorded with an X’Celerator detector between 3 ° 2θ and 90 ° 2θ with 0.017 ° steps. Incident beam mask was fixed at 20 mm and soller slits at 0.04 rad.</em>
DOI: 10.17638/datacat.liverpool.ac.uk/1460
title: High-throughput discovery of a rhombohedral twelve-connected zirconium-based metal-organic framework with ordered terephthalate and fumarate linkers
DOI: 10.5066/p9llgxz7
title: Cameron-Creole Maintenance (CS-04a): 2018 land-water classification

description: The Louisiana State Legislature created the Coastal Wetlands Planning, Protection and Restoration Act (CWPPRA) to conserve, restore, create and enhance Louisiana's coastal wetlands. The wetland restoration plans developed pursuant to these acts specifically require an evaluation of the effectiveness of each coastal wetlands restoration project in achieving long-term solutions to arresting coastal wetlands loss. This data set includes mosaicked aerial photographs for the Cameron-Creole Maintenance (CS-04a) project for 2018. This data is used as a basemap land-water classification. It also serves as a visual tool for project managers to help them identify any obvious problems or land loss within their project boundary. A land-water classification also serves to evaluate the effectiveness of restoration efforts on specific CWPPRA sites to help assess landscape changes.
DOI: 10.5281/zenodo.5520616
title: Cretois_et_al_EE_2021

description: R code and data for the paper Cretois et al. 'Identifying and correcting spatial bias in citizen science data for wild ungulates in Norway' For the full description of the scripts and functions please refer to: https://github.com/BenCretois/Cretois_EE_2021 <em><strong>This folder contains:</strong></em> A folder <strong>real_analysis</strong> - which contains all data and scripts to run the analysis: - covariates_moose_roe: contains all the covariates used for analysing moose and roe deer data - covariates_reindeer: contains all the covariates used for analysing wild reindeer data A folder <strong>dataset - </strong>containing all the dataset used in the analysis including all the citizen science observation data and all telemetry data, shared with the agreements of the co-authors. A folder <strong>saved_models:</strong> to save the model in a .rds format, this is done during the analysis, after running the INLA models. A folder <strong>scripts -</strong> contains all the scripts used for the analysis (including plotting). Please refer to https://github.com/BenCretois/CS_in_habitat_studies for the description of each scripts. Please contact me at bencretois@gmail.com if you are running in any problems while running the scripts or if you have any questions regarding the analysis.
DOI: 10.5281/zenodo.4590152
title: Cretois_et_al_EE_2021

description: R code and data for the paper Cretois et al. 'Identifying and correcting spatial bias in citizen science data for wild ungulates in Norway' For the full description of the scripts and functions please refer to: https://github.com/BenCretois/Cretois_EE_2021 <em><strong>This folder contains:</strong></em> A folder <strong>real_analysis</strong> - which contains all data and scripts to run the analysis: - covariates_moose_roe: contains all the covariates used for analysing moose and roe deer data - covariates_reindeer: contains all the covariates used for analysing wild reindeer data A folder <strong>dataset - </strong>containing all the dataset used in the analysis including all the citizen science observation data and all telemetry data, shared with the agreements of the co-authors. A folder <strong>saved_models:</strong> to save the model in a .rds format, this is done during the analysis, after running the INLA models. A folder <strong>scripts -</strong> contains all the scripts used for the analysis (including plotting). Please refer to https://github.com/BenCretois/CS_in_habitat_studies for the description of each scripts. Please contact me at bencretois@gmail.com if you are running in any problems while running the scripts or if you have any questions regarding the analysis.
DOI: 10.6084/m9.figshare.14540611.v2
title: Longitudinal phenotypic study of late-onset retinal degeneration due to a founder variant c.562C&gt;A p.(Pro188Thr) in the <i>C1QTNF5</i> gene

description: <b>Background</b>: Late-onset retinal degeneration (L-ORD) is a rare autosomal dominant retinal dystrophy related to <i>C1QTNF5</i> gene variants. <b>Materials and methods</b>: Twenty-six patients (21–81 years) with L-ORD due to c.562C&gt;A p.(Pro188Thr) with a mean follow-up time of 8 years (range 1–37 years) underwent an extensive ophthalmic work-up. <b>Results</b>: Best-corrected visual acuity (BCVA) and visual fields were maintained up to 50 to 55 years (n = 8), with a gradual decline, but conservation of functional central vision between 55 to 65 years (n = 15), followed by a steep decrease in overall visual function beyond 65 years (n = 9). Classic anterior segment findings in L-ORD of abnormally long, anteriorly inserted lens zonules were absent in most patients (n = 24/26). In contrast, findings of iris transillumination and sphincter pupillae atrophy with poor dilation were novel. Patients presented with three completely different initial fundus phenotypes: adjoining pavingstone-like atrophic patches (type 1) (n = 6/20); tiny yellow-white subretinal dots (type 2) (n = 8/20); or larger yellow, thick, round sub-RPE drusenoid deposits (type 3) (n = 4/20). Two patients had a mixed phenotype. Although different in presentation phenotype, patients eventually all progressed to a common panretinal atrophy with diffuse intraretinal pigment migration beyond the age of 65. Progression pace, and thus visual prognosis, differed depending on presentation phenotype. Specifically, type 2 appears to have a more benign course. <b>Conclusions</b>: Phenotypic analysis showed three distinct presenting phenotypes with a considerable intrafamilial variability both in age of onset of clinical signs and in disease progression, with a fair visual potential (&gt;20/40) until the seventh decade. <b>Abbreviations:</b> L-ORD: Late-onset retinal degeneration; C1QTNF5: complement 1Q tumor necrosis factor 5; OCT: Ocular coherence tomography; BCVA: Best-corrected visual acuity; RPE: Retinal pigment epithelium; ffERG: Full-field electroretinography; IRD: Inherited retinal dystrophy; CNV: Choroidal neovascularization; LAZ: Long anteriorly inserted zonules; AMPK: AMP-activated protein kinase; IOP: Intraocular pressure; cSLO: confocal scanning laser ophthalmoscopy; BAF: Blue light autofluorescence; NIR-AF: Near-infrared autofluorescence; NIR-R: Near-infrared reflectance; RF: Red-free; SD-OCT: Spectral domain ocular coherence tomography; HRR: Hardy-Rand-Rittler pseudo-isochromatic plates; AS: anterior segment; UBM: ultrasound biomicroscopy; PCR: Polymerase chain reaction; SNP: Single nucleotide polymorphism; VEGF: Vascular endothelial growth factor; IZ: Interdigitation zone; EZ: Ellipsoid zone; ELM: External limiting membrane; LP: Light perception; AMD: Age-related macular degeneration; SFD: Sorsby fundus dystrophy
DOI: 10.6084/m9.figshare.14540611
title: Longitudinal phenotypic study of late-onset retinal degeneration due to a founder variant c.562C&gt;A p.(Pro188Thr) in the <i>C1QTNF5</i> gene

description: <b>Background</b>: Late-onset retinal degeneration (L-ORD) is a rare autosomal dominant retinal dystrophy related to <i>C1QTNF5</i> gene variants. <b>Materials and methods</b>: Twenty-six patients (21–81 years) with L-ORD due to c.562C&gt;A p.(Pro188Thr) with a mean follow-up time of 8 years (range 1–37 years) underwent an extensive ophthalmic work-up. <b>Results</b>: Best-corrected visual acuity (BCVA) and visual fields were maintained up to 50 to 55 years (n = 8), with a gradual decline, but conservation of functional central vision between 55 to 65 years (n = 15), followed by a steep decrease in overall visual function beyond 65 years (n = 9). Classic anterior segment findings in L-ORD of abnormally long, anteriorly inserted lens zonules were absent in most patients (n = 24/26). In contrast, findings of iris transillumination and sphincter pupillae atrophy with poor dilation were novel. Patients presented with three completely different initial fundus phenotypes: adjoining pavingstone-like atrophic patches (type 1) (n = 6/20); tiny yellow-white subretinal dots (type 2) (n = 8/20); or larger yellow, thick, round sub-RPE drusenoid deposits (type 3) (n = 4/20). Two patients had a mixed phenotype. Although different in presentation phenotype, patients eventually all progressed to a common panretinal atrophy with diffuse intraretinal pigment migration beyond the age of 65. Progression pace, and thus visual prognosis, differed depending on presentation phenotype. Specifically, type 2 appears to have a more benign course. <b>Conclusions</b>: Phenotypic analysis showed three distinct presenting phenotypes with a considerable intrafamilial variability both in age of onset of clinical signs and in disease progression, with a fair visual potential (&gt;20/40) until the seventh decade. <b>Abbreviations:</b> L-ORD: Late-onset retinal degeneration; C1QTNF5: complement 1Q tumor necrosis factor 5; OCT: Ocular coherence tomography; BCVA: Best-corrected visual acuity; RPE: Retinal pigment epithelium; ffERG: Full-field electroretinography; IRD: Inherited retinal dystrophy; CNV: Choroidal neovascularization; LAZ: Long anteriorly inserted zonules; AMPK: AMP-activated protein kinase; IOP: Intraocular pressure; cSLO: confocal scanning laser ophthalmoscopy; BAF: Blue light autofluorescence; NIR-AF: Near-infrared autofluorescence; NIR-R: Near-infrared reflectance; RF: Red-free; SD-OCT: Spectral domain ocular coherence tomography; HRR: Hardy-Rand-Rittler pseudo-isochromatic plates; AS: anterior segment; UBM: ultrasound biomicroscopy; PCR: Polymerase chain reaction; SNP: Single nucleotide polymorphism; VEGF: Vascular endothelial growth factor; IZ: Interdigitation zone; EZ: Ellipsoid zone; ELM: External limiting membrane; LP: Light perception; AMD: Age-related macular degeneration; SFD: Sorsby fundus dystrophy
DOI: 10.6084/m9.figshare.14540611.v1
title: Longitudinal phenotypic study of late-onset retinal degeneration due to a founder variant c.562C&gt;A p.(Pro188Thr) in the <i>C1QTNF5</i> gene

description: <b>Background</b>: Late-onset retinal degeneration (L-ORD) is a rare autosomal dominant retinal dystrophy related to <i>C1QTNF5</i> gene variants. <b>Materials and methods</b>: Twenty-six patients (21–81 years) with L-ORD due to c.562C&gt;A p.(Pro188Thr) with a mean follow-up time of 8 years (range 1–37 years) underwent an extensive ophthalmic work-up. <b>Results</b>: Best-corrected visual acuity (BCVA) and visual fields were maintained up to 50 to 55 years (n = 8), with a gradual decline, but conservation of functional central vision between 55 to 65 years (n = 15), followed by a steep decrease in overall visual function beyond 65 years (n = 9). Classic anterior segment findings in L-ORD of abnormally long, anteriorly inserted lens zonules were absent in most patients (n = 24/26). In contrast, findings of iris transillumination and sphincter pupillae atrophy with poor dilation were novel. Patients presented with three completely different initial fundus phenotypes: adjoining pavingstone-like atrophic patches (type 1) (n = 6/20); tiny yellow-white subretinal dots (type 2) (n = 8/20); or larger yellow, thick, round sub-RPE drusenoid deposits (type 3) (n = 4/20). Two patients had a mixed phenotype. Although different in presentation phenotype, patients eventually all progressed to a common panretinal atrophy with diffuse intraretinal pigment migration beyond the age of 65. Progression pace, and thus visual prognosis, differed depending on presentation phenotype. Specifically, type 2 appears to have a more benign course. <b>Conclusions</b>: Phenotypic analysis showed three distinct presenting phenotypes with a considerable intrafamilial variability both in age of onset of clinical signs and in disease progression, with a fair visual potential (&gt;20/40) until the seventh decade. <b>Abbreviations:</b> L-ORD: Late-onset retinal degeneration; C1QTNF5: complement 1Q tumor necrosis factor 5; OCT: Ocular coherence tomography; BCVA: Best-corrected visual acuity; RPE: Retinal pigment epithelium; ffERG: Full-field electroretinography; IRD: Inherited retinal dystrophy; CNV: Choroidal neovascularization; LAZ: Long anteriorly inserted zonules; AMPK: AMP-activated protein kinase; IOP: Intraocular pressure; cSLO: confocal scanning laser ophthalmoscopy; BAF: Blue light autofluorescence; NIR-AF: Near-infrared autofluorescence; NIR-R: Near-infrared reflectance; RF: Red-free; SD-OCT: Spectral domain ocular coherence tomography; HRR: Hardy-Rand-Rittler pseudo-isochromatic plates; AS: anterior segment; UBM: ultrasound biomicroscopy; PCR: Polymerase chain reaction; SNP: Single nucleotide polymorphism; VEGF: Vascular endothelial growth factor; IZ: Interdigitation zone; EZ: Ellipsoid zone; ELM: External limiting membrane; LP: Light perception; AMD: Age-related macular degeneration; SFD: Sorsby fundus dystrophy
DOI: 10.5281/zenodo.5521604
title: readme

description: my readme
DOI: 10.5281/zenodo.5521603
title: readme

description: my readme
DOI: 10.5063/5q4thd
title: Data for the case study described in Luypaert et al. (2021) - A framework for the quantification of functional soundscape diversity using Hill numbers

description: This data was used to construct the case study in:ENTER FULL REFERENCE HERE ONCE PUBLISHEDUPDATE THIS INFORMATION LATER ON: 1. Frog incidence frequency dataThis data represents a subset of the data described in:Bueno, A. S., Masseli, G. S., Kaefer, I. L., & Peres, C. A. (2020). Sampling design may obscure species–area relationships in landscape‐scale field studies.Ecography, 43(1), 107-118.The data consists of a subset of 105 sites on 62 forest islands and 4 continuous forest sites.The data was obtained for the project Ecological Impacts of River Damming on Forest Bird Assemblages in the Brazilian Amazon. Find out more at https://www.rufford.org/projects/anderson_saldanha_bueno.Raw data files corresponding to these frog observations are available for inspection on the ARBIMON platform:https://arbimon.rfcx.org/project/soundscape-frogdiv-relationship2. Acoustic index dataFor the purposes of the case study described in Luypaert et al. (2021), the Acoustic Cover (CVR) index was used. The CVR-index was computed using a sampling rate of 41,000 Hz and a window size of 256. Indices were computed in the R programming language using the 'index_calc' function in the soundscapeR package (https://github.com/ThomasLuypaert/soundscapeR), which in turn calls on the QUT Ecoacoustics Analysis Programs software for its index computations (https://ap.qut.ecoacoustics.info/tutorials/01-usingap/practical?tabs=windows).