cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29084270.v1
title: ABSI

description: Knowledge about the breeding location and abundance of migratory and non-migratory seabirds has been used over the past decade to address fundamental questions in marine research. Up to date, no consistent sea bird breeding data is present for the Australian offshore islands. Here, we present a collated and homogenized data collection of records made on breeding populations from Australian offshore islands. Records were collected from all available sources spanning a timeframe from 1902 – 2023. Record numbers were manually quality checked and locations adjusted based on original comments and satellite imagery. We present data of 1043 locations situated in Australian offshore waters, including Norfolk Islands and the Subantarctic islands. Breeding numbers of any additional, non-seabird species are also given.The data set is designed to be used to inform conservation and planning and serves as a base line for future research.
DOI: 10.6084/m9.figshare.14812878.v1
title: Data for Long-term cross-scale comparison of grazing and mowing on plant diversity and community composition in a salt-marsh system

description: Land abandonment has been increasing in recent decades in Europe, usually accompanied by biodiversity decline. Whether livestock grazing and mowing can safeguard biodiversity across spatial scales in the long term is unclear. Using a 48-year experiment in a salt marsh, we compared land abandonment (without grazing and mowing) and seven management regimes including cattle grazing, early season mowing, late season mowing, both early and late season mowing, and grazing plus each of the mowing regimes on plant diversity at the local and larger scales (i.e. aggregated local communities). Also, we compared their effects on community composition (both in identities and abundances) in time and space. Under land abandonment, plant diversity declined in the local communities and this decline became more apparent at the larger scale, particularly for graminoids and halophytes. All management regimes, except for late season mowing, maintained plant diversity at these scales. Local plant communities under all treatments underwent different successional trajectories, in the end, diverged from their initial state except for that under grazing (a cyclic succession). Year-to-year changes in local community composition remained at a similar level over time under land abandonment and grazing plus early season mowing, while it changed under other treatments. Vegetation homogenized at the larger scale over time under land abandonment while vegetation remained heterogeneous under all management regimes. Synthesis. Our experiment suggests that late season mowing may not be sustainable to conserve plant diversity in salt marshes. Other management regimes can maintain plant diversity across spatial scales and vegetation heterogeneity at the larger scale in the long term, but local community composition may change over time. The excel file contains two data frames, one is coverage data for each species in each permanent plot in the control (without grazing and mowing), cattle grazing, early season mowing, late season mowing, both early and late season mowing, and grazing plus each of the mowing regimes from 1972 to 2019. The other one is biomass data from mowing and grazing plus mowing treatments. Biomass data are not available for the control and grazing treatments.
DOI: 10.6084/m9.figshare.26372140.v1
title: Understanding Feedback Mechanisms in Jupyter Notebooks

description: Dataset and replication package for the paper titled "Understanding Feedback Mechanisms in Jupyter Notebooks"
DOI: 10.6084/m9.figshare.807701.v1
title: Social Media and the Research Cycle

description: My slides from the September 24th Research Without Boarders discussion at Columbia University
DOI: 10.17632/sg3b3f25p4
title: Metabolic-scale gene activation screens identify SLCO2B1 as a heme transporter that enhances cellular iron availability

description: Original, uncropped western blot images for the manuscript: Unlu G. et al., 2022, Metabolic-scale gene activation screens identify SLCO2B1 as a heme transporter that enhances cellular iron availability
DOI: 10.17632/zjfxmy3nhv
title: The Epidemiology of Merkel Cell Carcinoma in the United States (Supplementary Material)

description: This document contains the supplementary material for the article "The Epidemiology of Merkel Cell Carcinoma in the United States" published in JAAD (https://doi.org/10.1016/j.jaad.2025.05.001). In it, we describe our methodology for calculating the solar irradiance at selected locations. We also display the additional figures cited in the manuscript.
DOI: 10.17632/574v66hf2v
title: Product Reviews Dataset for Emotions Classification Tasks - Indonesian (PRDECT-ID) Dataset

description: PRDECT-ID Dataset is a collection of Indonesian product review data annotated with emotion and sentiment labels. The data were collected from one of the giant e-commerce in Indonesia named Tokopedia. The dataset contains product reviews from 29 product categories on Tokopedia that use the Indonesian language. Each product review is annotated with a single emotion, i.e., love, happiness, anger, fear, or sadness. The group of annotators does the annotation process to provide emotion labels by following the emotions annotation criteria created by an expert in clinical psychology. Other attributes related to the product review are also extracted, such as Location, Price, Overall Rating, Number Sold, Total Review, and Customer Rating, to support further research.
DOI: 10.17632/dztcpvx6k7
title: Seismo-electric Tomography (SET) and Electrical Resistivity Imaging (ERI) of Kribi

description: Seismo-electric Tomography (SET) and Electrical Resistivity Imaging (ERI) of Kribi.
The Electroseismic and resistivity Dataset (part used in the research paper) is composed of three (3) files. 
1. VES_2021-2023: collecting of resistivity data carried out in Kribi from 2021 to 2023. The available lithology and stratigraphy of the drilled wells. 
2. Kribi_2019-2021_ATS_SEM: seismo-electrical data set collected. only the ESKT and ESIT are provided
3. Kribi-Campo VES data: Data extracted from the research paper published by Kouamo et al., 2022.
All the data sets can be readily uploaded into starter golden software or Leapfrog software for further processing.
DOI: 10.17632/gty4zkxd4f
title: Data for: Does Specialized Psychological Treatment for Offending Reduce Recidivism? A Meta-Analysis Examining Staff and Program Variables as Predictors of Treatment Effectiveness

description: SPSS file containing all articles reviewed for the meta-analyses and key study variables.
DOI: 10.17632/rgbwbg39y2
title: GCA2025_Nakashima_Source data

description: Trace element abundances and noble gas isotope ratios of Ca-Al-rich inclusions from two CV3 chondrites (Allende and Axtell)
DOI: 10.6084/m9.figshare.3495803.v2
title: strabismus patients HRQoL.xlsx

description: health related quality of life of strabismus patients
DOI: 10.6084/m9.figshare.9879635.v1
title: Dataset 1 NLRX1 expression data used in Fig 1

description: Dataset 1 NLRX1 expression data used in Fig 1
DOI: 10.17632/7dn4g8rgzc
title: Data for: Site-Specific Quasi In Situ Investigation of Primary Static Recrystallization in a Low Carbon Steel

description: Scanning Data (*.osc), TSL OIM files, and ang files (where applicable) for Sample 3, 4, and 5 *.osc and *.oim are compatible/created with EDAX OIM 7.3.1. *.oim files contain all evaluations. *.ang can be opened by most EBSD softwares. They are not included for sample 5 due to file size limitations.
DOI: 10.17632/5d7bgdjv5r
title: Data_XuhanDongGCAsubmitted2024

description: All produced in this study and literature data used in the figures in the manuscript are provided.
DOI: 10.17632/zfwr38f2bf
title: Replication code for Du, Hebert and Li (2023) "Intermediary Balance Sheet and Treasury Yield Curve", forthcoming in Journal of Financial Economics

description: We provide replication code and pseudo data for Du, Hebert and Li (2023) "Intermediary Balance Sheet and Treasury Yield Curve", forthcoming in Journal of Financial Economics”,
DOI: 10.17632/f9hfcfyt93
title: GBM CODEX clustered single cell data 

description: We imaged in total 58 glioblastoma explants using CODEX technology with a 55-marker panel. The imaging data was segmented into single cells  based on best-focus nuclear staining using DAPI and DRAQ5 as reference. Spatial (X/Y/Z) coordinates can locate each cell within a specific slide. Cell type annotation was thereafter performed using both VORTEX clustering and manual supervision on the slides (refer to software package from the NOLAN lab, Stanford (https://github.com/nolanlab/CODEX). 
A previously established highly multiplexed tissue cytometry platform called CO-Detection by indEXing (CODEX) was re-engineered here here to create multidimensional imaging datasets of glioblastoma (GBM) bioreactor explants. In this procedure, DNA-barcoded antibodies bound to antigens present in the tissue were iteratively rendered visible by hybridizing complementary fluorescent DNA oligonucleotides. An algorithmic pipeline was used to process raw imaging data, segment and identify single cells and their localizations within tissues, and quantify their marker expression. Unsupervised clustering, followed by manual curation of clusters based on marker expression, morphology and tissue localization, was used to call out specific cell types. Expression of selected markers per cell were manually gated in CellEngine (https://cellengine.com). Cellular neighborhoods were algorithmically identified. We identified seven conserved, distinct tissue compartments (TCs) –a collection of components characteristic of the GBM iTME. This study provides a framework for interrogating how glioblastoma patients could potentially profit from local neoadjuvant immunotherapies. 

Clustering_results.csv table contains cell types annotation, expression profiles, coordinates of all segmented objected identified in the explants analyzed in this study. Further, it contains information on the biopsy location (c=center, p= periphery of the tumor), treatment info of the explants (control, anti-CD47, anti-PD1, combination), and the respective anonymized tumor internal tumor ID.
DOI: 10.17632/fwhytt5mzd
title: Axial CT Imaging Dataset for AI-Powered Kidney Stone Detection: A Resource for Deep Learning Research

description: This dataset introduces a comprehensive CT scan image dataset focused on kidney stone detection, consisting of two groups: one from individuals diagnosed with kidney stones and the other from those without the condition. The dataset has been meticulously curated, verified, and labeled by experienced medical professionals, ensuring its high quality and reliability for both research and educational applications. Collected from medical centers in Sulaimani and Rania, Kurdistan Region, Iraq, the dataset provides unique insights into the prevalence and characteristics of kidney stones in this region. With 3,364 original CT images and 35,457 augmented images, it offers a valuable resource for developing and evaluating deep learning algorithms for kidney stone detection. The augmented images further increase their applicability for algorithm training, medical research, and educational purposes. This dataset can potentially advance diagnostic tool development, enhance medical research, and serve as an educational resource for students studying kidney stone.
DOI: 10.17632/hvmxhjtzm9
title: Cardiovascular risk assessment using ASCVD risk score in fibromyalgia – A single centre, retrospective study using “traditional” case-control methodology and “novel” machine learning.

description: The objective of the current study is to compare the cardiovascular risk using AtheroSclerotic CardioVascular Disease (ASCVD) risk score in fibromyalgia patients versus normal controls as a traditional case-control study as well as apply supervised ML method for the development and training of a classification model to help predict the ASCVD risk category in fibromyalgia patients. 139 patients with fibromyalgia who visited the rheumatology out-patient department of the Quaternary centre in South India from 1st September 2016 to 31st January 2019; and who satisfied the inclusion criteria were included in the study. Fibromyalgia Impact Questionnaire Revised (FIQR) and Brief Pain Inventory (BPI) along with routine clinical and biochemical data of were included for analysis. 10 year and Lifetime mortality risk factors were analyzed using case control and supervised machine learning algorithms.
DOI: 10.17632/kpzf77xmrw
title: Environmental Protection Tax and Firms’ ESG Investment: Evidence from China

description: Does environmental protection tax (EPT) improve firms’ environmental governance performance? Previous studies ignore that EPT affects firms' environmental governance behavior by increasing discharge and non-compliance costs. To fill this gap, we estimate the impact of EPT on firms' environmental, social, and governance (ESG) investments using Chinese listed firms during 2013-2020. we propose two key hypothesises: "Hypothesis 1A. EPT increases the firm’s green-producing and green-responsibility investment" and "Hypothesis 1B. EPT improves the quality of a firm’s environmental information disclosure". We estimate the impact of EPT on firms' environmental, social, and governance (ESG) investments using Chinese listed firms during 2013-2020. To evaluate firms’ ESG activities, we construct specific E, S, and G indicators relating to the environment, including the firm’s green-producing investment, green responsibility investment, and environmental information disclosure, which highlight the key impact of EPT on firms’ environmental governance. The three dimensions (E, S, and G) of ESG are often considered independent in most studies. but they can be relevant on an environmental level, reflecting the different ways in which corporate environmental governance is conducted. EPT is measured at the firm level using pollution discharge fees from 2013 to 2017 and pollution discharge taxes from 2018 to 2020. We find that EPT significantly forces firms to engage in more ESG activities after controlling for firm characteristics, firm-level, and year-level fixed effects. Our findings are robust to IV approaches, Heckman Correction, panel Generalized Method of Moments (GMM) estimations, an alternative EPT measure (EPT standards at the prefecture-level city), and ESG measures (ESG scores from a third party), as well as a group test. We also investigate the channel through which EPT boosts firms' ESG activities. One is an increasing tax payment as polluting discharges increase. The other is the ex-post noncompliance cost because EPT imposes strict penalties on violators, it includes illegal costs, negotiation costs, and litigation costs. We find that EPT has a positive impact on ESG in firms with greater cost pressure, which is measured by highly polluting industries and experiences with environmental controversy. Furthermore, we find that the ESG improvements are more significant in firms that are privately controlled, located in areas with sound environmental protection justice, and have weaker competitiveness.
DOI: 10.17632/w3m84v8tc7
title: Ensayo opción de grados profesionales para la carrera Negocios Internacionales Coexistencia de marcas o marcas homónimas en el mundo globalizado en el marco del estudio de la competencia

description: Este ensayo es la opción de grado para la carrera de Negocios Internacional en la 
corporación universitaria Americana Sede Medellín, el mismo se basa en el concepto de 
coexistencia de marcas o marcas homónimas nos obliga a validar ampliamente nuestra 
competencia con el fin de evitar controversias futuras adelantándonos a confusiones ante 
nuestros clientes o consumidores de la imagen, identidad, producto o servicio etc…esta 
problemática se puede mitigar realizando los registros de marca pertinente ante la entidades 
nacionales e internacionales según la visión de crecimiento de cada organización, ya existen 
casos reconocidos como el de Polo Club Colombia y Polo Ralp Lauren en los cuales las 
similitudes entre producto y servicio evidencian problemas de expansión en mercados 
internacionales y confusión trasmitida al consumidor final generando problemáticas de servicio 
en consolidación de marca, reprocesos y sobrecostos en temas de servicio y publicidad para 
generar recordación.
Palabras clave: Branding, Comercio Internacional, Marcas Similares.
DOI: 10.17632/x3jbtstc25
title: A dataset of features for robotic limb movement classification through EEG signals

description: Each dataset refers to a specific frequency band: Delta, Theta, Alpha, Beta, and Gamma.
DOI: 10.6084/m9.figshare.26045368.v1
title: Understanding spatiotemporal effects of food supplementation on host-parasite interactions using community-based science

description: The goal of this study was to determine the effect of food supplementation on eastern bluebirds (<i>Sialia sialis</i>) and their nest parasite community across the geographic range of the bluebirds from 2018–2021. We received 674 nests from 69 stewards in 26 states in the eastern United States. Nest box stewards reported whether or not they fed their bluebirds mealworms or suet, then followed the nesting success of the birds (number of eggs laid and hatched, proportion that hatched, number and proportion that fledged). We then identified and quantified parasites in the nests.
DOI: 10.17632/nykrzdm74f
title: Attain

description: An inclusive pavement distress dataset containing 2,293 images of 19,761 distress-type instances taken with smartphone cameras mounted on a vehicle's front and rear windshields. This dataset comprises images of ten different pavement distress types, including longitudinal and transverse cracks (linear cracks), alligator cracks, block cracks, weathering, lane/shoulder drop-off, raveling, patching and utility cuts, manholes, faded markings, and potholes. The Attain dataset's images have been manually annotated for object detection and classification purposes and can be used to train machine learning and deep learning models to detect and classify pavement distresses.
DOI: 10.17632/p8kf893yv3
title: Lithium-ion Battery OCV and Dynamic Test Data of a LiFePO4 cylindrical cell

description: This lab experimental data repository contains open-circuit voltage (OCV) and dynamic test data of the commercial A123 26650 m1b ( 2.5 Ah LiFePO4) cylindrical cell. This dataset was collected at the High-Voltage Battery Research Lab at University of Colorado Colorado Springs using an Arbin BT2000 battery cycler and a Cincinnati Sub-zero thermal chamber. This dataset has been used for the model parameterization of a coupled electro-thermal equivalent-circuit model (CET model) in the following publications: A. K. de Souza, G. Plett and M. S. Trimboli, "Lithium-Ion Battery Charging Control Using a Coupled Electro-Thermal Model and Model Predictive Control," 2020 IEEE Applied Power Electronics Conference and Exposition (APEC), 2020, pp. 3534-3539, doi: 10.1109/APEC39645.2020.9124431. Kawakita de Souza, A. (2020). Advanced Predictive Control Strategies for Lithium-Ion Battery Management Using a Coupled Electro-Thermal Model [Master thesis, University of Colorado, Colorado Springs]. ProQuest Dissertations Publishing. M. A. Xavier, A. K. de Souza and M. S. Trimboli, "An LPV-MPC Inspired Battery SOP Estimation Algorithm Using a Coupled Electro-Thermal Model," 2021 American Control Conference (ACC), 2021, pp. 4421-4426, doi: 10.23919/ACC50511.2021.9483433. - The OCVdata and DYNdata folders contain the lab data that can be used with the ECM toolbox from Prof. Plett's book (Battery Management Systems, Volume I: Battery Modeling) to estimate the parameters of the Enhanced self-correcting model for the temperature range from -25 ℃ to 45 ℃ in increments of 10 ℃. - The CCCV folder contains the CCCV data at 25 ℃ at four different charging C-rates (1C, 2C, 3C and 4C). - The Miscellaneous folder contains: i) Experimental data for cell discharging using UDDS drive cycles at 25 ℃ and 35 ℃ used in the publications mentioned above. ii) Periodic pulse data for thermal dynamics characterization used in the master thesis mentioned above.
DOI: 10.17632/vs679tgx8s
title: Dataset on India’s imports of Penaeus vannamei brooders from the United States

description: Dataset includes the imports of SPF P. vannamei brooders from the United States and other (non-U.S.) countries to India over a period of 16 years. The historical dataset comprises of the quantity of brooders imported by India from various sources. Shrimp stocks supplied from empanelled broodstock centers, including Shrimp Improvement Systems (Florida), Shrimp Improvement Systems (Hawaii), American Penaeid (Florida), BenchMark Genetics (Florida), Syaqua Pvt. Ltd. (Florida), Kona Bay Marine Resources (Hawaii), Molokkai Broodstock Company (Florida), Sea Products (later rebranded as Blue Genetics, Texas), and the Oceanic Institute (Hawaii), are categorized under imports from the USA. In contrast, stocks supplied by Shrimp Improvement Systems (Singapore), Blue Genetics (Mexico), Global Gen (Indonesia), Vannamei 101 (Thailand), Syaqua Siam (Thailand), and CP Foods Pvt. Ltd. (Thailand) fall under imports from other countries. Notably, imports from Southeast Asian countries have been banned in India since 2013. hence, the data from these regions (specifically Thailand-based suppliers) are only included for the years 2009 to 2013. Data was directly obtained from the AQF, established by the Marine Products Export Development Authority (MPEDA) under the Government of India.
DOI: 10.17632/6wtpgr3kbj
title: CWL run of Alignment Workflow (CWLProv 0.6.0 Research Object)

description: The CWL alignment workflow included in this case study is designed by Data Biosphere. It adapts the alignment pipeline originally developed at Abecasis Lab, The University of Michigan. This workflow is part of NIH Data Commons initiative and comprises of four stages. First step, "Pre-align'' accepts a Compressed Alignment Map (CRAM) file (a compressed format for BAM files developed by European Bioinformatics Institute (EBI)) and human genome reference sequence as input and using underlying software utilities of SAMtools such as view, sort and fixmate returns a list of fastq files which can be used as input for the next step. The next step "Align'' also accepts the human reference genome as input along with the output files from "Pre-align'' and uses BWA-mem to generate aligned reads as BAM files. SAMBLASTER is used to mark duplicate reads and SAMtools view to convert read files from SAM to BAM format. The BAM files generated after "Align'' are sorted with "SAMtool sort''. Finally, these sorted alignment files are merged to produce single sorted BAM file using SAMtools merge in "Post-align'' step. This dataset folder is a CWLProv Research Object that captures the Common Workflow Language execution provenance, see https://w3id.org/cwl/prov/0.6.0 or use https://pypi.org/project/cwlprov/ to explore
DOI: 10.17632/pcftzv8w63
title: Brugge_Breast_Atlas_CyTOF_Primary_Raw

description: A Breast Atlas Integrating Single-Cell Proteomics and Transcriptomics, Developmental Cell, 2022

Raw primary breast CyTOF data (relating to Figures 1/S1 and 3/S3)