cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.81537
title: Data from: Projected climate-driven faunal movement routes

description: Historically, many species moved great distances as climates changed.
 However, modern movements will be limited by the patterns of
 human-dominated landscapes. Here, we use a combination of projected
 climate-driven shifts in the distributions of 2903 vertebrate species,
 estimated current human impacts on the landscape, and movement models, to
 determine through which areas in the western hemisphere species will
 likely need to move to track suitable climates. Our results reveal areas
 with projected high densities of climate-driven movements – including, the
 Amazon Basin, the southeastern United States and southeastern Brazil. Some
 of these regions, such as southern Bolivia and northern Paraguay, contain
 relatively intact landscapes, whereas others such as the southeastern
 United States and Brazil are heavily impacted by human activities. Thus,
 these results highlight both critical areas for protecting lands that will
 foster movement, and barriers where human land-use activities will likely
 impede climate-driven shifts in species distributions.
description: Vectors of faunal
 movement, Western HemispheremovementVectors.zip
DOI: 10.5061/dryad.4g1g0
title: Data from: When the sun never sets: diverse activity rhythms under continuous daylight in free-living arctic-breeding birds

description: Circadian clocks are centrally involved in the regulation of daily
 behavioural and physiological processes. These clocks are synchronized to
 the 24 h day by external cues (Zeitgeber), the most important of which is
 the light–dark cycle. In polar environments, however, the strength of the
 Zeitgeber is greatly reduced around the summer and winter solstices
 (continuous daylight or continuous darkness). How animals time their
 behaviour under such conditions has rarely been studied in the wild. Using
 a radio-telemetry-based system, we investigated daily activity rhythms
 under continuous daylight in Barrow, Alaska, throughout the breeding
 season in four bird species that differ in mating system and parental
 behaviour. We found substantial diversity in daily activity rhythms
 depending on species, sex and breeding stage. Individuals exhibited either
 robust, entrained 24 h activity cycles, were continuously active
 (arrhythmic) or showed ‘free-running’ activity cycles. In semipalmated
 sandpipers, a shorebird with biparental incubation, we show that the
 free-running rhythm is synchronized between pair mates. The diversity of
 diel time-keeping under continuous daylight emphasizes the plasticity of
 the circadian system, and the importance of the social and life-history
 context. Our results support the idea that circadian behaviour can be
 adaptively modified to enable species-specific time-keeping under polar
 conditions.
description: Steiger_et_al_2013
DOI: 10.5061/dryad.s2479
title: Data from: Causes and evolutionary consequences of population subdivision of an Iberian mountain lizard, Iberolacerta monticola

description: Aim: The study of the factors that influence population connectivity and
 spatial distribution of genetic variation is crucial for understanding
 speciation and for predicting the effects of landscape modification and
 habitat fragmentation, which are considered severe threats to global
 biodiversity. This dual perspective is obtained from analyses of subalpine
 mountain species, whose present distribution may have been shaped both by
 cyclical climate changes over ice ages and anthropogenic perturbations of
 their habitats. Here, we examine the phylogeography, population structure
 and genetic diversity of the lacertid lizard Iberolacerta monticola, an
 endemism considered to be facing a high risk of extinction in several
 populations. Location: Northwestern quadrant of the Iberian Peninsula.
 Methods: We analyzed the mtDNA variation at the control region (454 bp)
 and the cytochrome b (598 bp) loci, as well as at 10 nuclear
 microsatellite loci from 17 populations throughout the distribution range
 of the species. Results: According to nuclear markers, most sampling sites
 are defined as distinct, genetically differentiated populations, and many
 of them show traces of recent bottlenecks. Mitochondrial data identify a
 relatively old, geographically restricted lineage, and four to six younger
 geographically vicariant sister clades, whose origin may be traced back to
 the mid-Pleistocene revolution, with several subclades possibly associated
 to the mid-Bruhnes transition. Geographic range fragmentation of one of
 these clades, which includes lowland sites, is very recent, and most
 likely due to the accelerated loss of Atlantic forests by human
 intervention. Main Conclusions: Altogether, the data fit a “refugia within
 refugia” model, some lack of pattern uniformity notwithstanding, and
 suggest that these mountains might be the cradles of new species of
 Iberolacerta. However, the changes operated during the Holocene severely
 compromise the long-term survival of those genetic lineages more exposed
 to the anthropogenic perturbations of their habitats.
description: microsatellite_data_Remon_et_al_PLOS_ONE_2013Excel with microsatellite data from Iberolacerta populations used in this workmicrosatellite_data_110117.xlsDL_cytb_final_Remon_et_al_PLOS_ONE_2013Concatenated mitochondrial DNA sequences of control region and cytochrome b, for the different populations of Iberolacerta analyzed in this work.DL_cytb_final.fas
DOI: 10.5061/dryad.fc74k
title: Data from: Parasitic plants have increased rates of molecular evolution across all three genomes

description: Background: Theoretical models and experimental evidence suggests that
 rates of nucleotide substitution could be raised in parasitic organisms
 compared to non-parasitic taxa. Parasitic plants provide an ideal test for
 these predictions, as there are at least a dozen independent origins of
 the parasitic lifestyle in angiosperms. Studies of a number of parasitic
 plant lineages have suggested faster rates of molecular evolution, but the
 results of some studies have been mixed. Comparative analysis of all
 parasitic plant lineages, including sequences from all three genomes, is
 needed to examine the generality of the relationship between rates of
 molecular evolution and parasitism in plants. Results: We analysed DNA
 sequence data from the mitochondrial, nuclear and chloroplast genomes for
 12 independent evolutionary origins of parasitism in angiosperms. We
 demonstrated that parasitic lineages have a faster rate of molecular
 evolution than their non-parasitic relatives in sequences for all three
 genomes, for both synonymous and nonsynonymous substitutions. Conclusions:
 Our results prove that raised rates of molecular evolution are a general
 feature of parasitic plants, not confined to a few taxa or specific genes.
 We discuss possible causes for this relationship, including increased
 positive selection associated with host-parasite arms races, relaxed
 selection, reduced population size or repeated bottlenecks, increased
 mutation rates, and indirect causal links with generation time and body
 size. We find no evidence that faster rates are due to smaller effective
 populations sizes or changes in selection pressure. Instead, our results
 suggest that parasitic plants have a higher mutation rate than their close
 non-parasitic relatives. This may be due to a direct connection, where
 some aspect of the parasitic lifestyle drives the evolution of raised
 mutation rates. Alternatively, this pattern may be driven by an indirect
 connection between rates and parasitism: for example, parasitic plants
 tend to be smaller than their non-parasitic relatives, which may result in
 more cell generations per year, thus a higher rate of mutations arising
 DNA copy errors per unit time. Demonstration that adoption of a parasitic
 lifestyle influences the rate of genomic evolution is relevant to attempts
 to infer molecular phylogenies of parasitic plants and to estimate their
 evolutionary divergence times using sequence data.
description: Sister Clade
 ComparisonsTree files, alignments,
 PAML executables and associated command files for sister pair rates
 estimation of parasite and nonparasite clades. Sequence data compiled from
 GenBank accessions (see paper for details). Additional information
 included in README fileComparisons.zip
DOI: 10.5061/dryad.82gr4
title: Data from: Isolation and characterization of fifteen polymorphic microsatellite loci for the citrus mealybug, Planococcus citri (Hemiptera: Pseudococcidae), and cross-amplification in two other mealybug species

description: [No abstract filled]
description: Raw 454 GS-FLX sequences
 from microsatellite libraries for Planococcus citriHigh throughput DNA
 sequencing by 454-GS-FLX Titanium (Roche Diagnostics) chemistry of
 microsatellite libraries of Planococcus citriPciPool_sequences_TOT.fas.zipMicrosatellite 454 GS-FLX sequences from microsatellite libraries for Planococcus citriHigh throughput DNA sequencing by 454-GS-FLX Titanium (Roche Diagnostics) chemistry of microsatellite libraries of Planococcus citriPciPool_sequences_microsat.fas.zip
DOI: 10.5061/dryad.3mt25
title: Data from: Old-male paternity advantage is a function of accumulating sperm and last-male precedence in a butterfly

description: Old-male mating advantage has been convincingly demonstrated in Bicyclus
 anynana butterflies. This intriguing pattern may be explained by two
 alternative hypotheses: (i) an increased aggressiveness and persistence of
 older males during courtship, being caused by the older males' low
 residual reproductive value; and (ii) an active preference of females
 towards older males what reflects a good genes hypothesis. Against this
 background, we here investigate postcopulatory sexual selection by
 double-mating Bicyclus anynana females to older and younger males, thus
 allowing for sperm competition and cryptic mate choice, and by genotyping
 the resulting offspring. Virgin females were mated with a younger virgin
 (2–3 days old) and afterwards an older virgin male (12–13 days old) or
 vice versa. Older males had a higher paternity success than younger ones,
 but only when being the second (=last) mating partner, while paternity
 success was equal among older and younger males when older males were the
 first mating partner. Older males produced larger spermatophores with much
 higher numbers of fertile sperm than younger males. Thus, we found no
 evidence for cryptic female mate choice. Rather, the findings reported
 here seem to result from a combination of last-male precedence and the
 number of sperm transferred upon mating, both increasing paternity
 success.
description: Supplemental Data for
 Microsatellite and Sperm analysesSupplemental
 Data.zip
DOI: 10.5061/dryad.6h3f7
title: Data from: The condition dependency of fitness in males and females: the fitness consequences of juvenile diet assessed in environments differing in key adult resources

description: Variation in environmental or genetic quality leads to phenotypic
 variation in condition, but how much variation in fitness is created by
 this variation in condition? Using Drosophila melanogaster, we manipulated
 condition via alternative larval diets and then tested several key factors
 predicted to influence how much variation in fitness results from
 differences in condition. Specifically, we were interested in whether male
 and female fitness are affected equally by condition and whether the
 strength of selection on condition depends on the abundance of key
 resources limiting the reproductive output of each sex. We measured
 selection on condition in alternative assay contexts that varied in the
 abundance of adult food (a key resource for females) or in the abundance
 of females (a key resource for males). Overall, selection tended to be
 stronger on males than females. However, selection on males was weakened
 when the abundance of their key resource (females) was elevated.
 Increasing the abundance of the key resource for females (live yeast)
 elevated their reproductive output as expected but did not change the
 strength of selection in this sex. Instead, this manipulation increased
 selection on males, suggesting that this environmental factor indirectly
 affects selection on males via their interaction with females.
description: Data Coding
 InfoCodes for other data
 filesDev
 Timing-ALL(w-M&F)Average development time
 per vialBody mass
 dataWeight-ALL.xlsAdult fitness (over all 6 days)Fitness Data-ALL.xlsAdult fitness (just day 1)Fitness Data- Day1.xlsAdult fitnes (over days 1-3)Fitness Data- Day1-3.xlsAdult fitness (just days 4-6)Fitness Data- day4-6.xls
DOI: 10.15468/dl.ysk5ty
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((-69.7078 19.26099,-69.60849 19.28458,-69.618 19.30551,-69.72226 19.28915,-69.7078 19.26099))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 81 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001594-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.mf00q
title: Data from: Concholepas concholepas Ferritin H-like subunit (CcFer): molecular characterization and single nucleotide polymorphism associated to innate immune response

description: Ferritin has been shown as the principal protein of iron storage and iron
 detoxification, playing a pivotal role for the cellular homeostasis in
 living organisms. However, recent studies in marine invertebrates have
 suggested its association with innate immune system. In the present study,
 one Ferritin subunit was identified from the gastropod Concholepas
 concholepas (CcFer), which was fully characterized by Rapid Amplification
 of cDNA Ends technique. Simultaneously, a challenge test was performed to
 evaluate the immune response against Vibrio anguillarum. The full length
 of cDNA Ccfer was 1,030 bp, containing 513 bp of open reading frame that
 encodes 170 amino acid peptides, which was similar to the Ferritin-H
 subunit described in vertebrates. Untranslated Regions (UTRs) were
 identified with a 5'UTR of 244 bp that contains iron responsive
 element (IRE), and a 3'UTR of 273 pb. The predicted molecular mass of
 deduced amino acid of CcFer was 19.66 kDa and isoelectric point of 4.92.
 Gene transcription analysis revealed that CcFer increases against
 infections with V. anguillarum, showing a peak expression at 6 hours
 post-infection. Moreover, a single nucleotide polymorphism was detected at
 -64 downstream 5'UTR sequence (SNP-64). Quantitative real time
 analysis showed that homozygous mutant allele (TT) was significantly
 associated with higher expression levels of the challenged group compared
 to wild (CC) and heterozygous (CT) variants. Our findings suggest that
 CcFer is associated to innate immune response in C. concholepas and that
 the presence of SNPs may involve differential transcriptional expression
 of CcFer.
description: Contig_consensus_CconcholepasEST-database from Concholepas concholepas transcriptome.
DOI: 10.5061/dryad.7341c
title: Data from: The geographic mosaic of sex and infection in lake populations of a New Zealand snail at multiple spatial scales

description: Understanding how sexual and asexual forms of the same species coexist is
 a challenge for evolutionary biology. The Red Queen hypothesis predicts
 that sex is favored by parasite-mediated selection against common asexual
 genotypes, leading to the coexistence of sexual and asexual hosts. In a
 geographic mosaic, where the risk of infection varies in space, the theory
 also predicts that sexual reproduction would be positively correlated with
 disease prevalence. We tested this hypothesis in lake populations of a New
 Zealand freshwater snail, Potamopyrgus antipodarum, by comparing pairwise
 difference matrices for infection frequency and male frequency using
 partial Mantel tests. We conducted the test at three spatial scales: among
 lakes on the South Island, among depths within an intensively sampled lake
 (Lake Alexandrina), and within depths at Lake Alexandrina. We found that
 the difference in infection risk and the difference in the proportion of
 sexual snails were significantly and positively correlated at all spatial
 scales. Our results thus suggest that parasite-mediated selection
 contributes to the long-term coexistence of sexual and asexual individuals
 in coevolutionary hotspots, and that the “warmth” of hotspots can vary on
 small spatial scales.
description: Data for 15
 lakes15_lakes.txtData for Lake Alexandrinaalexandrina.txtCoordinate for 15 lakescoordinates_lakes.txtDistance for sites in Lake Alexandrinaalexandrina_distances.txt
DOI: 10.5061/dryad.33817
title: Data from: Phylogenetic analysis of 47 chloroplast genomes clarifies the contribution of wild species to the domesticated apple maternal line

description: Both the origin of domesticated apple and the overall phylogeny of the
 genus Malus are still not completely resolved. Having this as a target, we
 built a 134,553 position long alignment including two previously published
 cpDNAs and 45 de novo sequenced, fully co-linear chloroplast genomes from
 cultivated apple varieties and wild apple species. The data produced are
 free from compositional heterogeneity and from substitutional saturation,
 which can adversely affect phylogeny reconstruction. Phylogenetic analyses
 based on this alignment recovered a branch, having the maximum bootstrap
 support, subtending a large group of the cultivated apple sorts together
 with all analyzed European wild apple (Malus sylvestris) accessions. One
 apple cultivar was embedded in a monophylum comprising wild M. sieversii
 accessions and other Asian apple species. The data demonstrate that M.
 sylvestris has contributed chloroplast genome to a substantial fraction of
 domesticated apple varieties, supporting the conclusion that different
 wild species should have contributed the organelle and nuclear genomes to
 domesticated apple.
description: Total alignment of 47
 accessions of Malus and Pyrus (length 134553 pos)total_134553
DOI: 10.5281/zenodo.18387892
title: DIVINE: Andalusia Agroclimatic Information Network Historic Datasets - GRANADA - (June 24 - May 25)

description: This dataset contains high-resolution daily agroclimatic data from the RIA (Red de Información Agroclimática de Andalucía) network, managed by IFAPA. The data has been collected as part of the DIVINE project to support research in precision agriculture, water management, and climate adaptation in Southern Spain.

The dataset covers the period from June 1, 2024, to May 31, 2025, providing key parameters such as temperature (mean, max, min), humidity, wind speed, solar radiation, precipitation, and calculated ETo (Evapotranspiration) using the Penman-Monteith method.

Geographic Coverage and Station Distribution: The dataset includes part of the processed records from 123 monitoring stations distributed across the 8 provinces of Andalusia. In this case the data includes the ones in Granada.

Data Format:





Format: JSON (JavaScript Object Notation).




Naming Convention: 34 [Province_ID] [Station_ID] DIVINE [Station_Name] ([Province]).json




Coordinate System: WGS84 (included within the metadata of individual station files).



Source: Data retrieved from the official IFAPA RIAWS API (Junta de Andalucía).
DOI: 10.5281/zenodo.18387893
title: DIVINE: Andalusia Agroclimatic Information Network Historic Datasets - GRANADA - (June 24 - May 25)

description: This dataset contains high-resolution daily agroclimatic data from the RIA (Red de Información Agroclimática de Andalucía) network, managed by IFAPA. The data has been collected as part of the DIVINE project to support research in precision agriculture, water management, and climate adaptation in Southern Spain.

The dataset covers the period from June 1, 2024, to May 31, 2025, providing key parameters such as temperature (mean, max, min), humidity, wind speed, solar radiation, precipitation, and calculated ETo (Evapotranspiration) using the Penman-Monteith method.

Geographic Coverage and Station Distribution: The dataset includes part of the processed records from 123 monitoring stations distributed across the 8 provinces of Andalusia. In this case the data includes the ones in Granada.

Data Format:





Format: JSON (JavaScript Object Notation).




Naming Convention: 34 [Province_ID] [Station_ID] DIVINE [Station_Name] ([Province]).json




Coordinate System: WGS84 (included within the metadata of individual station files).



Source: Data retrieved from the official IFAPA RIAWS API (Junta de Andalucía).
DOI: 10.5061/dryad.sm635
title: Data from: Model selection as a tool for phylogeographic inference: an example from the willow Salix melanopsis

description: Phylogeographic inference has typically relied on analyses of data from
 one or a few genes to provide estimates of demography and population
 histories. While much has been learned from these studies, all
 phylogeographic analysis is conditioned on the data, and thus, inferences
 derived from data that represent a small sample of the genome are
 unavoidably tenuous. Here, we demonstrate one approach for moving beyond
 classic phylogeographic research. We use sequence capture probes and
 Illumina sequencing to generate data from &gt;400 loci in order to
 infer the phylogeographic history of Salix melanopsis, a riparian willow
 with a disjunct distribution in coastal and the inland Pacific Northwest.
 We evaluate a priori phylogeographic hypotheses using coalescent models
 for parameter estimation, and the results support earlier findings that
 identified post-Pleistocene dispersal as the cause of the disjunction in
 S. melanopsis. We also conduct a series of model selection exercises using
 IMa2, Migrate-n and ∂a∂i. The resulting ranking of models indicates that
 refugial dynamics were complex, with multiple regions in the inland
 regions serving as the source for postglacial colonization. Our results
 demonstrate that new sources of data and new approaches to data analysis
 can rejuvenate phylogeographic research by allowing for the identification
 of complex models that enable researchers to both identify and estimate
 the most relevant parameters for a given system.
description: DRYAD-Smel
DOI: 10.7927/9qvf-0706
title: IPCC AR6 Synthesis Report LR Figure 3.6 (a): Total GHG, CO2 and CH4 emissions and timing of reaching net-zero while keeping warming to 1.5°C with no or limited overshoot

description: GHG, CO2 and CH4 emissions over time (in GtCO2eq) with historical emissions, projected emissions in line with policies implemented until the end of 2020 (grey), and pathways consistent with temperature goals in colour (blue, purple, and brown, respectively). This figure shows pathways that limit warming to 1.5°C (&gt;50%) with no or limited overshoot (C1).