cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.r7wphj
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Australian National Insect Collection, NSW DPI Biosecurity Collections, Australian Museum provider for OZCAM, Queen Victoria Museum Art Gallery provider for OZCAM, Museums Victoria provider for OZCAM, Queensland Museum provider for OZCAM, NatureMapr, International Barcode of Life project (iBOL), Entomological Specimens of Museum of Nature and Human Activities, Hyogo Pref., Japan)",
 "TaxonKey is Anoplognathus olivieri (Schönherr & Dalman, 1817)"
 ]
}

 The dataset includes 539 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034179-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ah289g
title: Occurrence Download

description: A dataset containing 105 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blackwellomyces Spatafora & Luangsa-ard, 2017"
 ]
}

 The dataset includes 105 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034180-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ze8zt5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cymbopogon jwarancusa (Jones) Schult."
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034183-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sy2ru2
title: Occurrence Download

description: A dataset containing 708150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "Year is not null",
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America)"
 ]
}

 The dataset includes 708150 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034181-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4s5jbd
title: Occurrence Download

description: A dataset containing 708150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "Year is not null",
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America)"
 ]
}

 The dataset includes 708150 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034182-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10196492
title: Contrastive Language Image Pretraining by openai
DOI: 10.6084/m9.figshare.28028411.v1
title: Detailed documents on genome assembly and gene structures for <i>Bathymodiolus marisindicus</i>

description: detailed documents on genome assembly and gene structures for Bathymodiolus_marisindicus
DOI: 10.6084/m9.figshare.28028411
title: Detailed documents on genome assembly and gene structures for <i>Bathymodiolus marisindicus </i>and its endosymbiont

description: detailed documents on genome assembly and gene structures for<i> Bathymodiolus marisindicus </i>and and its endosymbiont
DOI: 10.6084/m9.figshare.28028411.v2
title: Detailed documents on genome assembly and gene structures for <i>Bathymodiolus marisindicus</i>

description: detailed documents on genome assembly and gene structures for Bathymodiolus_marisindicus
DOI: 10.15468/dl.rr78ep
title: Occurrence Download

description: A dataset containing 708150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phasianus colchicus Linnaeus, 1758)",
 "Year is not null",
 "BasisOfRecord is Human Observation",
 "Country is one of (United States of America)"
 ]
}

 The dataset includes 708150 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034184-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3605213_d1
title: Additional file 3: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

description: Bacterial strain orthology logic array indicating the presence of given orthologs (7194 of them) in the 2527 bacterial strain genomes considered in this study. (RAR 1397 kb)
DOI: 10.6084/m9.figshare.c.3605153_d26
title: Additional file 10: Table S5. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: Assessment of a possible time shift in gene expression between parasite lines. We examined the data to assess whether some genes displayed a shifted timing of expression between parasite strains. By comparing peaks of expression for each gene in each pairwise comparison, we determined the number of genes whose peak of expression was shifted of a determined number of hours. 0 corresponds to a shift of less than 1 h, one corresponds to a shift of at least 1 h but less than two hours, etc. Therefore, two genes cannot be more than 24 h apart of each other in either direction. We observed that more than 70 % of all genes peaked within the same 8-hour window in the pfmdr1 dataset (Table S5A) while about 80 % of the genes peaked within the same 5-hour window in the pfcrt dataset (Table S5B). (XLSX 44 kb)
DOI: 10.6084/m9.figshare.c.3605153_d27
title: Additional file 16: Table S10. of Genome-wide transcriptome profiling reveals functional networks involving the Plasmodium falciparum drug resistance transporters PfCRT and PfMDR1

description: List of genes with significant differential expression between 7G8 and 7G8 pfcrt_CTL in a stage-specific manner. Genes with significantly higher expression displayed absolute fold changes &gt;1.5 and normalized fold changes values two standard deviations above the median normalized fold change value. Genes with significantly lower expression had absolute fold change values lower than 0.6 and a normalized fold change three standard deviations below the median value. Fold change for each gene at the designated stage is indicated. (XLSX 55 kb)
DOI: 10.6084/m9.figshare.c.3605213_d2
title: Additional file 4: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

description: List of 7194 orthologs ordered according to pathogen association score PA. The orthologs shaded in pink represent ones present in VFDB. (XLSX 570 kb)
DOI: 10.6084/m9.figshare.c.3605213_d3
title: Additional file 2: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

description: List of 1578 decoded bacterial genomes present in the KEGG web platform with no present citation implicating them as pathogenic. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.c.3605216_d1
title: Additional file 1: Figure S1. of Transcriptome analysis of sweet orange trees infected with â  Candidatus Liberibacter asiaticusâ   and two strains of Citrus Tristeza Virus

description: Summary of reads from Citrus sinensis infected with CTV-B2, CTV-B6 and CaLas-B232 and the mock-inoculated control (H). Reads were obtained through paired-end RNA sequencing and mapped to the C. sinensis genome. Figure S2. Differentially expressed transcripts in diseased compared to healthy C. sinensis. Transcripts were up- or down-regulated in response to infection by CTV-B2, CTV-B6 and CaLas-B232. Figure S3. Melt curves of gene products assayed by RT-qPCR demonstrate specificity and reproducibility of the qPCR reactions. Gene targets are described in Table S11. Figure S4. Summary of differentially expressed transcripts based on functional categorization by Mapman. A. cell wall modification and cell organization; B. transcription factors; C. transporters; D. hormone metabolism; E. secondary metabolism; F. signaling; G. disease resistance proteins; H. proteolysis; I. development. Figure S5. Leaves that were sampled for RNA-seq. A, healthy; B, CTV-B2 positive; C, CTV-B6 positive; D, CaLas-B232 positive. Table S1. Differentially expressed transcripts of genes with unknown functions in response to CTV-B2, CTV-B6 and CaLas-B232. Table S2. GO categorization of genes that were differentially expressed in response to CTV-B2, CTV-B6 and CaLas-B232. Table S3. GO categorization of genes that were differentially expressed in response to CTV-B2, CTV-B6 but not CaLas-B232. Table S4. GO categorization of genes that responded to CTV-B2 and CaLas-B232 but not CTV-B6. Table S5. GO categorization of genes that responded to CTV-B6 and CaLas-B232 but not CTV-B2. Table S6. GO categorization of genes that responded only to CTV-B2. Table S7. GO categorization of genes that responded only to CTV-B6. Table S8. GO categorization of genes that responded only to CaLas-B232. Table S9. Complete set of differentially expressed transcripts in response to the three pathogens. Table S10. Estimates of changes in gene expression (fold change) by RT-qPCR and Gfold. Table S11. Primers used for qRT-PCR validation of differentially expressed transcripts identified by Gfold. (ZIP 1765 kb)
DOI: 10.6084/m9.figshare.c.3605213_d4
title: Additional file 1: of Encyclopedia of bacterial gene circuits whose presence or absence correlate with pathogenicity – a large-scale system analysis of decoded bacterial genomes

description: List of 949 decoded bacterial genomes present in the KEGG web platform deemed as pathogenic along with literature citations for pathogenicity and antibiotic resistance phenotype. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3613790_d17
title: Additional file 12: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: miRNA expression in HEK293-FLP cells and expression scores of miRNA targets. (XLS 140Â kb)
DOI: 10.6084/m9.figshare.c.3613790_d18
title: Additional file 18: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: Barcoded sequencing reads produced. (XLS 26Â kb)
DOI: 10.6084/m9.figshare.c.3613790_d19
title: Additional file 17: of High-throughput discovery of post-transcriptional cis-regulatory elements

description: Primers used in this study. (XLS 42Â kb)
DOI: 10.6084/m9.figshare.c.3613862_d1
title: Additional file 1: Table S1. of Comparative study of Cronobacter identification according to phenotyping methods

description: Cronobacter spp. identifications using previous and current versions of the API20E database. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3613862_d2
title: Additional file 2: Table S2. of Comparative study of Cronobacter identification according to phenotyping methods

description: Cronobacter spp. identifications using previous and current versions of the ID32E database. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3613904_d1
title: Additional file 1: of Equipment, measurement and doseâ  a survey for therapeutic ultrasound

description: Full set of anonymous responses to the survey. The file contains an overview sheet and 44 sheets for the 44 questions of the survey. (XLSX 154 kb)
DOI: 10.6084/m9.figshare.c.3616877_d3
title: Additional file 3: Table S3. of A census of Îą-helical membrane proteins in double-stranded DNA viruses infecting bacteria and archaea

description: Virus categories. Description of virus categories and data shown in Figs.Â 5 and 6. (XLSX 49Â kb)
DOI: 10.6084/m9.figshare.c.3616907_d1
title: Additional file 1: of Prospective clinical trial of Intravitreal aflibercept treatment for PolypoIdal choroidal vasculopathy with hemorrhage or exudation (EPIC study): 6 month results

description: Epic 6 Month Results. The data in this supplementary table consists of both descriptive anatomical descriptions and quantitative data that was used to determine the effect aflibercept therapy had on the hemorrhagic and exudative changes within the macula. (XLS 107 kb)
DOI: 10.6084/m9.figshare.c.3617870_d1
title: Additional file 1: of A simple, accurate and universal method for quantification of PCR

description: Supporting data for Figs 1-4. (XLS 603Â kb)
DOI: 10.6084/m9.figshare.c.3617855_d7
title: Additional file 10: Table S3. of SNP- and haplotype-based genome-wide association studies for growth, carcass, and meat quality traits in a Duroc multigenerational population

description: Number of replicates for detection of significant SNPs in simulation study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3617852_d9
title: Additional file 11: Figure S7. of Shedding light on the expansion and diversification of the Cdc48 protein family during the rise of the eukaryotic cell

description: Evolutionary trees of the individual AAA domains of the different Cdc48 family members. The trees were constructed as described in Fig. 2, but did not include sequences from archaea (A and B). In (A), the incomplete D2-domain of Yta7 was included, leading to a change in the branching order for the two D-domains of N-ethylmaleimide-sensitive factor (NSF). (ZIP 1Â mb)
DOI: 10.6084/m9.figshare.c.3617936_d1
title: MOESM1 of Phase 1 randomized controlled trial to evaluate the safety and immunogenicity of recombinant Pichia pastoris-expressed Plasmodium falciparum apical membrane antigen 1 (PfAMA1-FVO [25-545]) in healthy Malian adults in Bandiagara

description: Additional file 1. Raw data set of the IgG and GIA responses for the phase 1 trial of PfAMA1 FVO [25-545] in Malians adults in Bandiagara.
DOI: 10.6084/m9.figshare.c.3618809_d2
title: MOESM5 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 5: Appendix 5. Coded data from systematic data for all included articles.
DOI: 10.6084/m9.figshare.c.3618815_d1
title: Additional file 1: of A new look at the LTR retrotransposon content of the chicken genome

description: galGal4 LTR retrotransposon locations. Positions are in BED6 (Browser Extensible Data 6-column) format with column definitions: chromosome name, element start coordinate (zero indexed), element end coordinate, element description (FL = “full list”, SIE = “structurally intact element”), score (arbitrary and always set to ‘0’), element strand (+/-). (BED 1002 kb)
DOI: 10.6084/m9.figshare.c.3618818_d1
title: Additional file 4: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Term categorization. This text file shows how the terms were categorized in the Review step of ETC Text Capture in the experiment. (TXT 12Â kb)
DOI: 10.6084/m9.figshare.c.3618809_d3
title: MOESM4 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 4: Appendix 4. Excluded articles. Table S4. List of excluded articles at full text assessment.
DOI: 10.6084/m9.figshare.c.3618818_d2
title: Additional file 3: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Gold standard matrix. The expert hand-curated matrix used as the ground truth to evaluate the ETC generated matrices. (XLSX 31Â kb)
DOI: 10.6084/m9.figshare.c.3618809_d4
title: MOESM2 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 2: Appendix 2. Data extraction code book and questionnaire.
DOI: 10.6084/m9.figshare.c.3618824_d3
title: Additional file 7: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of primers used in this study. (XLSX 4 kb)
DOI: 10.6084/m9.figshare.c.3618818_d3
title: Additional file 2: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Normalized input. The normalized input used in the experiment. (TXT 308Â kb)
DOI: 10.6084/m9.figshare.c.3618878_d1
title: Additional file 2 of Reconstruction of gene networks using prior knowledge

description: List of the edges for DREAM4 data with a l p h a =0 . 5. (TEXT 3 KB)
DOI: 10.6084/m9.figshare.c.3618884_d1
title: Additional file 2: Table S2. of Hypomethylation of miR-142 promoter and upregulation of microRNAs that target the oxytocin receptor gene in the autism prefrontal cortex

description: Raw read counts of each microRNA from each individual in the high throughput small RNA analysis. (XLSX 129 KB)
DOI: 10.6084/m9.figshare.c.3619802_d2
title: Additional file 4: of Systematic review to understand and improve care after stillbirth: a review of parentsâ   and healthcare professionalsâ   experiences

description: Staff Intensity Effect Size table, excel, description of individual articles used in the staff data set. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3619802_d3
title: Additional file 3: of Systematic review to understand and improve care after stillbirth: a review of parentsâ   and healthcare professionalsâ   experiences

description: Parent Intensity Effect Size table, excel, description of individual articles used in the parent data set. (XLSX 22Â kb)
DOI: 10.6084/m9.figshare.c.3619841_d5
title: Additional file 2: Data S1. of Ribosome quality control is a central protection mechanism for yeast exposed to deoxynivalenol and trichothecin

description: Excel file including the selected 248 sensitive strains and the GO enrichment analysis. (XLSX 97Â kb)
DOI: 10.6084/m9.figshare.c.3620597_d16
title: Additional file 18: Table S5. of Punctuated chromatin states regulate Plasmodium falciparum antigenic variation at the intron and 2Â kb upstream regions

description: Significant sequence motif locations in var intron regions. (TXT 4Â kb)
DOI: 10.6084/m9.figshare.c.3620597_d19
title: Additional file 9: Table S2. of Punctuated chromatin states regulate Plasmodium falciparum antigenic variation at the intron and 2 kb upstream regions

description: 2 kb upstream region FAIRE-Seq signal comparison between var genes and different gene families (P-value is calculated based on Wilcoxon-Rank-Sum test, FDR indicates false discovery rate). (XLSX 53 kb)
DOI: 10.6084/m9.figshare.c.3620669_d1
title: Additional file 1: Table S1. of Longitudinal analysis of the lung microbiota of cynomolgous macaques during long-term SHIV infection

description: Estimates from a linear mixed model comparing taxa abundance between COPD+ and COPD− samples. Fold change estimates and basic statistics of several OTUs comparing COPD+ and COPD− samples 20 days after infection. In the linear mixed model, we accounted for individual monkey effects, days sampled, and included normalization factors. We filtered OTUs to those with at least 100 counts and declared OTUs significant if lower and upper log fold change estimates agreed in directionality. Row colors represent enrichment, green in COPD− and red in COPD+ samples. Table S2 Smoothing Spline ANOVA estimates comparing COPD+ and COPD− taxa abundances through time. Smoothing Spline ANOVA estimates of the difference in genera abundances between COPD+ and COPD− groups through time. To test for differentially abundant time intervals, we fit a smoothing spline and calculated 95 % Bayesian confidence intervals under the SSANOVA framework. The SSANOVA procedure also included time, obstruction status and their interaction. We estimate significance using a permutation procedure and calculate significance with area under the curve as our test statistic. Row colors represent enrichment, green in COPD− and red in COPD+ samples. (XLSX 52 kb)
DOI: 10.6084/m9.figshare.c.3620675_d1
title: Additional file 1: of Functional improvement assessed by multifocal electroretinogram after Ocriplasmin treatment for vitreomacular traction

description: Multifocal electroretinogram data. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3620699_d5
title: Additional file 5: Data S4. of Hepatocytes respond differently to major dietary trans fatty acid isomers, elaidic acid and trans-vaccenic acid

description: SILAC transVA-OA-CLA. Data from the SILAC investigation of the cellular response to transVA, OA and CLA. In sheet 1, “full data”, unfiltered data from this second SILAC triplex is displayed. In sheet 2, “signif. 1.3 fold”, proteins significantly regulated ≥ 1.3 fold in ≥ one comparison are displayed. Proteins are reported with Uniprot accession number, Name, Fold regulation in individual comparisons, the geometric standard deviation (Geo.SD.), and selected GO-terms: GO:0006950 response to stress (x) and GO:0002526 acute inflammatory response (y). Black bold: significant regulatory data (p  1.3, black italic: significant regulatory data (p  0.01). (XLSX 925 kb)
DOI: 10.6084/m9.figshare.c.3621764_d5
title: Additional file 4: of Identification of priorities for improvement of medication safety in primary care: a PRIORITIZE study

description: Characteristics of the respondents to the initial questionnaire. (ODT 6Â kb)
DOI: 10.6084/m9.figshare.c.3621764_d6
title: Additional file 1: of Identification of priorities for improvement of medication safety in primary care: a PRIORITIZE study

description: Initial questionnaire on problems and solutions related to medication safety and delayed diagnosis in primary care. (ODT 60Â kb)
DOI: 10.6084/m9.figshare.c.3621752_d7
title: Additional file 5: Dataset S3. of Functional characterization of the Mycobacterium abscessus genome coupled with condition specific transcriptomics reveals conserved molecular strategies for host adaptation and persistence

description: List of differentially expressed genes (including new CDS) in four experimental conditions: hypoxia, exposure to erythromycin, exposure to kanamycin and growth in artificial sputum medium. (XLSX 99 kb)
DOI: 10.6084/m9.figshare.c.3621794_d1
title: Additional file 4: Table S4. of Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs

description: List of genes in the hybrids exhibiting significant DE between the two parent-specific alleles at Pâ
DOI: 10.6084/m9.figshare.c.3621803_d2
title: Additional file 3: of Comparative physiological plasticity to desiccation in distinct populations of the malarial mosquito Anopheles coluzzii

description: Supplementary dataset 1. Raw data for protein, triglyceride and metabolomics assays. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3621839_d3
title: Additional file 3: of Nitrate enhances skeletal muscle fatty acid oxidation via a nitric oxide-cGMP-PPAR-mediated mechanism

description: Supporting data. (XLSX 45.3 kb)
DOI: 10.6084/m9.figshare.c.3621794_d6
title: Additional file 3: Table S3. of Analysis of Allelic Imbalance in Rice Hybrids Under Water Stress and Association of Asymmetrically Expressed Genes with Drought-Response QTLs

description: List of genes in the hybrids exhibiting significant DE between the two parent-specific alleles at Pâ
DOI: 10.6084/m9.figshare.c.3622799_d1
title: Additional file 2: Table S2. of Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides

description: List of over- and underexpressed genes in cumulus cells stimulated with FSH or AREG/EREG depicted in Venn diagrams. A complete list of genes depicted in Venn diagrams (Fig.Â 2). (XLSX 47Â kb)