cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.f4688/1
title: BMO Data Dryad

description: BeMindfulOnline.com data downloaded as CSV file from admin area of site. Includes perceived stress (PSS) scores, meditation practice answers (see ReadMe), gender and date of birth (if entered) for initial 100 participants
DOI: 10.5061/dryad.fm1dc/1
title: Data set information

description: A file containing the Genbank accessions and popset for each re-analysed data set.
DOI: 10.5061/dryad.fm1dc/2
title: E6_Octopus ocellatus

description: Haplotype file for Octopus ocellatus
DOI: 10.5061/dryad.fm1dc/3
title: E8_Rapana venosa

description: Haplotype file for Rapana venosa
DOI: 10.5061/dryad.fm1dc/4
title: E9_Portunus trituberculatus

description: Haplotype file for Portunus trituberculatus
DOI: 10.5061/dryad.gb135/1
title: FASTA sequence file of de novo Trinity assembly of mRNA transcripts from Manduca sexta head tissues

description: This file contains de novo assembled contigs constructed from Illumina short read sequencing of mRNA from the head tissues of the moth Manduca sexta. De novo assembly was carried out in the program Trinity. Assembled contigs represent genes and gene transcripts expressed in the head tissues of both male and female individuals.
DOI: 10.5061/dryad.h0228/15
title: DarwinTunes-medley-at-1700-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/16
title: DarwinTunes-medley-at-1800-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/17
title: DarwinTunes-medley-at-1900-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/18
title: DarwinTunes-medley-at-2000-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/19
title: DarwinTunes-medley-at-2125-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/20
title: DarwinTunes-medley-at-2280-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/21
title: DarwinTunes-medley-at-2375-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h0228/22
title: DarwinTunes-medley-at-2500-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h6p35/10
title: mollyseqs_7.fastq
DOI: 10.5061/dryad.h6p35/11
title: mollyseqs_8.fastq
DOI: 10.5061/dryad.h6p35/12
title: mollyseqs_9.fastq
DOI: 10.5061/dryad.h6p35/13
title: mollyseqs_10.fastq
DOI: 10.5061/dryad.h6p35/14
title: mollyseqs_11.fastq
DOI: 10.5061/dryad.h6p35/8
title: mollyseqs_1.fastq
DOI: 10.5061/dryad.h6p35/9
title: mollyseqs_6.fastq
DOI: 10.5061/dryad.hb169/1
title: GenePop file

description: Alleles from seven microsatellite loci in GenePop format of ticks collected from nest boxes in woodlots near Antwerp, Belgium
DOI: 10.5061/dryad.hb169/2
title: SPAGeDi file

description: Alleles from seven microsatellite loci in SPAGeDi format of ticks collected from nest boxes in woodlots near Antwerp, Belgium. Coordinates are used to indicate instar.
DOI: 10.5061/dryad.hb169/3
title: Arlequin file

description: Alleles from seven microsatellite loci in Arlequin format of ticks collected from nest boxes in woodlots near Antwerp, Belgium. Ticks are grouped per nest box, and structured per woodlot.
DOI: 10.5061/dryad.hb169/4
title: Pairwise distance matrix

description: Pairwise distance matrix between all nest boxes. Distances are absolute differences between geographical position (degrees lattitude and longitude).
DOI: 10.5061/dryad.jr934/2
title: Exploration scores and manipulated gizzard masses

description: This file contains data on experimental exploration scores in relation to their manipulated gizzard masses. See the ReadMe file for more information.
DOI: 10.5061/dryad.jr934/3
title: Exploration scores and whether a bird was resighted after its release

description: This data file contains experimental exploration scores, gizzard masses, and whether these birds were resighted after their release into the wild. See the ReadMe file for more information.
DOI: 10.5061/dryad.jr934/4
title: Encounter histories of free living red knots and their gizzard masses at capture

description: This file contains data on encounter histories (1998-2013) of free-living red knots together with their recorded gizzard masses at capture. These data were used in the MARK capture-recapture analyses. See the ReadMe file for more information.
DOI: 10.5061/dryad.m4cc1/1
title: raw mapping data

description: Genotypes used to construct linkage maps used in paper. First sheet contains the data from the smolt dataset. Second sheet contains the data from the meristics dataset.
DOI: 10.5061/dryad.m4cc1/2
title: Sashin_supplementalfile_h2linecross

description: Excel file with ATU data used for quantitative genetics. Sheet one contains the heritability, live cross, and ATU data. Sheet 2 family means for the number of ATUs. Sheet 3 sample, cross, ATUs, and genotypes for three candidate genes; clock1a, GHR1 and Myd118-1
DOI: 10.5061/dryad.np274/1
title: Modeled Historical Kelp Data. A Canadian Healthy Oceans Network Ecosystem Function Project, EF-11

description: Modeled mean and max yearly values of kelp biomass, production, blade erosion, dislodgement, mortality, and total detrital production based on recorded temperature (meanT, maxT) from 1976-2009. Also modeled were mean and max proportion of blade area grazed by Lacuna vincta (meanL, maxL), and blade coverage by Membranipora membranacea (meanM, maxM)
DOI: 10.5061/dryad.np274/2
title: Modeled Kelp Parameters with Simulated Destructive Grazing by Sea Urchins. A Canadian Healthy Oceans Network Ecosystem Function Project, EF-11

description: Modeled mean, maximum, and minimum kelp biomass, production, kelp blade erosion, dislodgement, mortality, and total detrital production during the transition from a kelp bed to an urchin barren over 34 years. This transition is caused by the progression of a simulated sea urchin grazing front.
DOI: 10.5061/dryad.np274/3
title: Modeled Future Kelp Parameters With Climate Change. A Canadian Healthy Oceans Network Ecosystem Function Project, EF-11

description: Modeled relative change (%) in kelp biomass, production, erosion, dislodgement, and mortality with simulated increases in temperature and significant wave height that are expected to occur in the next 10, 20, and 30 years. Also shown are modeled changes in kelp blade grazing (as proportion of blade grazed) by Lacuna vincta, and kelp blade coverage by Membranipora membranacea. Data are from simulations where temp and SWH are increased independently, and in combination. Simulations were also run with and without a sea urchin grazing front.
DOI: 10.5061/dryad.p58hb/1
title: Genome coordinates SRR2 genes

description: Genome coordinates of the genes based in the SRR ≥2 definition. Comma separated values (CSV) file including one row per gene, and the columns: chromosome, “left” boundary, “right” boundary and gene name.
DOI: 10.5061/dryad.p58hb/2
title: Supplementary Table 1

description: Supplementary table 1: Full list of genes in the 18 top loci from the WTCCC GWAS [19] according to the authors, the SRR ≥2 or the ± 50 Kb definitions. Excel file containing this table
DOI: 10.5061/dryad.ps816/1
title: the checklist of family clades

description: List of species and their assigned family clades included in the family-level analysis
DOI: 10.5061/dryad.ps816/2
title: BAMM parameter setting

description: containing the basic parameter settings for running BAMM
DOI: 10.5061/dryad.q835s/1
title: Whileetal_MolEcol_Dryad

description: Genotype information for all adults and offspring for each season. Data on adult and offspring traits.
DOI: 10.5061/dryad.q8v8v/1
title: Measurements of all individuals

description: This file is an excel workbook where each spreadsheet contains all the measurements for the species used in the study. For some species, the inference about sexual and male dimorphism was based on information in the literature, and these species are not in this data-set. For all other species (45 spp), the data-set contains measurements of: (1) length of the dorsal scute (carapace); (2) length of the lateral apophysis on the coxa of the right fourth leg; and (3) length of the femur of the fourth leg. All measurements are in mm. Some species did not present the coxal apophysis, and therefore there is no data for that structure in their spreadsheet.
DOI: 10.5061/dryad.s3k04/1
title: Raw_msat_genealexinput

description: Raw microsatellite data formatted for Gen Al Ex.
DOI: 10.5061/dryad.s3k04/2
title: locality data for final data set

description: UTM coordinates and population data for all individuals genotyped in this study.
DOI: 10.5061/dryad.sp4t0/1
title: Supplemental Text

description: Calculation of percent geographic overlap between models.
DOI: 10.5061/dryad.sp4t0/2
title: Supplemental Figure 1

description: Maxent output example for Flexicalymene for the first time-slice ofthe C5: (A) Original Distribution Model; (B) Forward Projection Distribution Model generated by projecting the niche modeled developed for the first time-slice onto the environmental parameters of second time-slice; (C) Omission and Predicted Area; (D) Sensitivity vs. 1-Specificity including AUC values; (E) Jackknife of regularized training gain; (F) Jackknife of test gain; (G) Response curves for each variable.
DOI: 10.5061/dryad.sp4t0/3
title: Supplemental Table 1

description: List of localities from which occurrence data were collected.
DOI: 10.5061/dryad.sp4t0/4
title: Supplemental Table 2

description: Occurrence data by time-slice.
DOI: 10.5061/dryad.sp4t0/5
title: Supplemental Table 3

description: Environmental Parameters (Modified from Malizia & Stigall, 2011).
DOI: 10.5061/dryad.sp4t0/6
title: Supplemental Table 4

description: Area Under the Curve (AUC) values for GARP and Maxent Models
DOI: 10.5061/dryad.1h2h0/1
title: Lachance et al 2013 G3 vesiculated penetrance data

description: Phenotype data for suppressor screens, reaction norms, and paternal effects.  Wing scores are in the format (left score, right score).  For example: (0,2) indicates a fly with a wild-type left wing and a right wing that contains a large vesicle.
DOI: 10.5061/dryad.1h551/1
title: Flight Initiation Distance data

description: Data on flight initiation distance were collected in the field according to an experimental protocol described in the associated paper. Each column of this csv file is described in more detail in the accompanying ReadMe file.
DOI: 10.5061/dryad.1h551/2
title: R script used to analyse flight initiation distance data

description: This is a plain text file contain the R script that we used to analyse the lizard FID data. It is self-explanatory, so no separate ReadMe file is provided.
DOI: 10.5061/dryad.1j292/2
title: LAAO_dna

description: DNA alignment of the L-amino acid oxidase (LAAO) toxin family
DOI: 10.5061/dryad.1j292/3
title: lectin_dna

description: DNA alignment of the C-type lectin (CTL) toxin family
DOI: 10.5061/dryad.1j292/4
title: pla2_dna

description: DNA alignment of the phospholipase A2 (PLA2) toxin family
DOI: 10.5061/dryad.1j292/5
title: serine_protease_dna

description: DNA alignment of the serine protease (SP) toxin family
DOI: 10.5061/dryad.1j292/6
title: svmp_dna

description: DNA alignment of the snake venom metalloproteinase (SVMP) toxin family
DOI: 10.5061/dryad.227qn/1
title: social_status_and_personality_data
DOI: 10.5061/dryad.23rc0/3
title: BUCKy infiles and results

description: BUCKy infiles and results from Bayesian concordance analysis of 26 nuclear loci.
DOI: 10.5061/dryad.23rc0/4
title: RAxML_26nucDNA

description: Infile and results from RAxML analysis of concatenated nuclear DNA (26 anonymous loci).
DOI: 10.5061/dryad.23rc0/5
title: RAxML_mtDNA-partitioned

description: Infile and results from analysis of 3 mitochondrial gene fragments.
DOI: 10.5061/dryad.23rc0/6
title: Starbeast analysis - 44 tips

description: Starbeast xml file and results from species tree analysis with every individual as a tip.
DOI: 10.5061/dryad.23rc0/7
title: Starbeast Species Tree

description: Starbeast xml file and results from species tree analysis.
DOI: 10.5061/dryad.23rc0/8
title: Script for making infiles

description: Python script used for making infiles for RAxML, MrBayes, and *BEAST analyses.  Input is a nexus file with a MrBayes block appended; output are infiles for: RAxML with randomly-chosen allele for nuclear loci, MrBayes files for gene tree analyses with either all alleles or randomly-chosen allele for heterozygotes; *BEAST files with either all alleles or randomly-chosen allele for heterozygotes.
DOI: 10.5061/dryad.23rc0/9
title: Illumina Read Data

description: Illumina MiSeq paired reads by individual for 44 individuals (40 Pseudacris, 2 Hyla cinerea, 2 Acris gryllus).  IDs correspond to those in Table 1 of the publication.
DOI: 10.5061/dryad.2br48/2
title: RF2 subfamily alignment (mtrf2a, mtrf2b, mtrf2c, prf2)

description: Fasta multiple sequence alignment of Release Factor 2 proteins. Sequences were retrieved from GenBank nr database using PSI-BLAST. The alignment was obtained with ClustalW (v2.0.10), and 60% of the gaps was removed with BMGE (v1.0). The alignment was visually inspected and manually adjusted to accuratly align all functionally characterized domains and sequence motifs. Each sequence header contains the species name, the identity of each protein and, for bacterial species, the bacterial group they belong to. The numbers present in the header are not meaningful.
DOI: 10.5061/dryad.2br48/3
title: Eukaryotic Complete Release Factor family alignment (RF1, RF2, ICT1, C12orf65)

description: Fasta multiple sequence alignment of all eukaryotic Release Factor proteins. Sequences were retrieved from GenBank nr database using PSI-BLAST. These were aligned through profile to profile sequential alignment of the individual subfamilies’ alignments using ClustalW (v2.0.10) followed by one last round of alignment refinement with Muscle’s refine option. Finally, the whole RF family alignment was inspected and manually adjusted. No gaps were removed. Each sequence header contains the species name and the identity of each protein.
DOI: 10.5061/dryad.2jr4p/1
title: Legg and Caron_supp. info. S1

description: Phylogenetic character list
DOI: 10.5061/dryad.2jr4p/2
title: Legg and Caron_NEXUS

description: Supplementary NEXUS file for phylogenetic analysis
DOI: 10.5061/dryad.3v8c8j49/1
title: Species_diagnostic_Suppl_table

description: SNP calls for all samples. C: homozygous O. clarki diagnostic; M: homozygous O. mykiss diagnostic; H: heterozygote; NC: no call; nr: assay not run or failed over entire Fluidigm plate.
DOI: 10.5061/dryad.4d786/1
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices, replicate #1 ("WT_1")
DOI: 10.5061/dryad.4d786/2
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices, replicate #2 ("WT_2")
DOI: 10.5061/dryad.4d786/3
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Dore (DVIT0689) growing shoot apices, replicate #3 ("WT_3")
DOI: 10.5061/dryad.4d786/4
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #1 ("mutant_1")
DOI: 10.5061/dryad.4d786/5
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #2 ("mutant_2")
DOI: 10.5061/dryad.4d786/6
title: RNA-Seq FASTQ data for Vitis vinifera var. Chasselas Ciotat (DVIT0372) growing shoot apices, replicate #3 ("mutant_3")
DOI: 10.5061/dryad.4md5s/1
title: Mothers daily reproduction

description: Reproductive output of aphid mothers assessed daily for the first 10 days (except for day 5), and every other day thereafter.
DOI: 10.5061/dryad.4r1g2/1
title: Fenberg&Roy_Dryad

description: Demographic and life history data collected in the field for 10 populations of the intertidal limpet, Lottia gigantea, from southern and central California. Data include size frequency distributions, historical size distributions from Los Angeles county, size (age) at sex change information, growth rates, and mortality measurements.
DOI: 10.5061/dryad.5418t/1
title: Supplementary data

description: This file contains supporting tables (online Table 1 to 7) and Figures (online Figures 1 to 8).
DOI: 10.5061/dryad.555hd/1
title: DNA sequences amplified by qPCR primers

description: DNA sequences were generated by sanger sequencing of amplicons from qPCR primers
DOI: 10.5061/dryad.555hd/2
title: qPCR assay details

description: Information of qPCR assay of standard curves, including R2, efficiency, Ct etc.
DOI: 10.5061/dryad.555hd/3
title: Reference gene evaluation

description: Best reference gene: evaluated by NormFinder and GeNorm
DOI: 10.5061/dryad.555hd/4
title: Nitrate and ammonia concentrations

description: Concentrations of nitrate and ammonia determined in Ridgeia blood
DOI: 10.5061/dryad.5g6312br/1
title: LakeDataSupplTablev2

description: Lake physical and environmental variables used in this study. Lake ages are midpoints of range in cases where dates are given as a range of estimates, and either represent basin age or age of most recent desiccation (if evidence for desiccation exists).
DOI: 10.5061/dryad.69sg2/1
title: Thomas_and_Martin_Dryad_global_wood_carbon_database
DOI: 10.5061/dryad.74kb1/1
title: rawdata

description: experimental data from the crosses performed
DOI: 10.5061/dryad.763bh/1
title: Tagged acorns used by rodents and foraging behaviour

description: Field data obtained from tagged acorns and video-cameras
DOI: 10.5061/dryad.765gr/1
title: Raw_data_niche_overlap

description: The data characterizes the choice of microhabitats by herbivorous coral reef fishes during their foraging activity. The columns specify the id (species plus individual number), the surface orientation, the underlying substratum, the extent to which an individual penetrated the substratum with its body or snout and the number of bites taken.
DOI: 10.5061/dryad.7vv50/17
title: hap_G100.D2.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº2, from generation G100.
DOI: 10.5061/dryad.7vv50/18
title: hap_G100.D3.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population, replicate nº3, from generation G100.
DOI: 10.5061/dryad.7vv50/19
title: hap_G100.D3.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population, replicate nº3, from generation G100.
DOI: 10.5061/dryad.7vv50/2
title: R.Simulation_inbreeding

description: R script to simulate the haplotypes generated during inbreeding
DOI: 10.5061/dryad.7vv50/3
title: SNP_info

description: Table with SNP marker information, used in the simulation of inbreeding.
DOI: 10.5061/dryad.7vv50/4
title: hap_G0.A.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population from generation 0.
DOI: 10.5061/dryad.7vv50/5
title: hap_G0.A.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a androdioecious population from generation 0.
DOI: 10.5061/dryad.7vv50/6
title: hap_G0.D.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a dioecious population from generation 0.
DOI: 10.5061/dryad.7vv50/7
title: hap_G0.D.O_X

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome X haplotypes of a dioecious population from generation 0.
DOI: 10.5061/dryad.7vv50/8
title: hap_G100.A1.O_IV

description: Phased haplotypes present in a outbred population. Used for simulation of inbreeding. This are the chromosome IV haplotypes of a androdioecious population, replicate nº1, from generation G100.
DOI: 10.5061/dryad.c03c2/6
title: Jaffe et al-null hypothesis files

description: ReadMe file
DOI: 10.5061/dryad.f60j5/1
title: Data

description: This file contains data used for analyses detailed in the manuscript 'Deception by flexible alarm mimicry in an African bird'.
DOI: 10.5061/dryad.h0228/23
title: DarwinTunes-medley-at-3000-generations

description: A medley of audio loops selected manually from a particular point in the evolution of experimental population 1 (EP1).
DOI: 10.5061/dryad.h6p35/15
title: mollyseqs_12.fastq
DOI: 10.5061/dryad.h6p35/16
title: mollyseqs_13.fastq
DOI: 10.5061/dryad.h6p35/17
title: mollyseqs_14.fastq
DOI: 10.5061/dryad.j9704/1
title: Taxonomic_Distinctness

description: Contains files for the calculation of taxonomic distinctness metrics for each of the millipede, centipede, and pseudoscorpion orders
DOI: 10.5061/dryad.jr3kh/1
title: Species' traits, trend and red list data for longhorn beetles, Sweden

description: Data set of species' traits for longhorn beetles living in Sweden along with estimates of long-term population trends covering 1920 to 2000 and regional 2010 IUCN red list classifications. The data has been used to study the relationship between species' traits and two aspects of extinction risk (long-term trends and red list classification). The information of species traits are compiled from published sources, and mainly describe information relevant for cerambycid species in Nordic conditions. For further information see the attached metafile.
DOI: 10.5061/dryad.m8jj7/1
title: Genetic Diversity and Classification of Oryza sativa with Emphasis on Chinese Rice Germplasm
DOI: 10.5061/dryad.nd764/1
title: data-set used in study of long-term effects of the Prestige oil spill in the European shag

description: This file contains data on reproductive success, climatic variables values (NAO and SST), and presence/absence of American mink in the colonies of European shag needed for the analyses presented in our study. Information about periods (before/after Prestige) and areas (oiled/unoiled) is also presented
DOI: 10.5061/dryad.r95c6/1
title: Study sites

description: Site name (abbreviation), location (latitude and longitude) and altitude (metres above sea level).
DOI: 10.5061/dryad.r95c6/2
title: Temperature data file

description: Air temperature data collected every two hours, by site. Date, Time: when air temperature was recorded. Temperature in degrees centigrade by site.
DOI: 10.5061/dryad.s3k04/3
title: Structure_input

description: Input file for use in STRUCTURE
DOI: 10.5061/dryad.s3k04/4
title: BS-B_ClayB_newhybridinput

description: Input file for program NewHybrid for analysis of hybridization between pops. BS-B and Clay-B
DOI: 10.5061/dryad.s3k04/5
title: BS-A_WS-A_newhybridinput

description: Input file for program NewHybrid for comparison of populations BS-A and WS-A
DOI: 10.5061/dryad.s3k04/6
title: Migrate-N input file

description: Input file for Migrate-N which includes all populations and all loci.
DOI: 10.5061/dryad.s3k04/7
title: Morphology_dataset

description: All morphological measurements used
DOI: 10.5061/dryad.sp4t0/10
title: Supplemental Table 8

description: Percent contribution per environmental variable for each Maxent model.
DOI: 10.5061/dryad.sp4t0/11
title: Supplemental Appendix 1

description: List of references for localities in Supplemental Tables 1 and 2