cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.skekv7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene holzmannii Heldr. ex Boiss.",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026752-241024112534372/datasets/export for details.
DOI: 10.15468/dl.dbkptr
title: Occurrence Download

description: A dataset containing 2002 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Muntingia calabura L."
 ]
}

 The dataset includes 2002 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026751-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15784/601781
title: U-series Geochronology, Isotope, and Elemental Geochemistry of a Subglacial Precipitate that Formed Across Termination III

description: This dataset represents geochemical analyses on sample PRR-50504, a chemical precipitate deposited beneath the East Antarctic Ice Sheet and collected at Elephant Moraine. The data include U-series geochronological data, carbon and oxygen stable isotope data, Sr isotopic data, and laser ablation elemental analyses. This material is based on services provided by the Polar Rock Repository with support from the National Science Foundation, under Cooperative Agreement OPP-2137467.
DOI: 10.1594/pangaea.777978
title: Physical oceanography during METEOR cruise M77/1

description: Expocode = 06M320081024,Version = 0.21 used on 2012/03/09 16:17:28,Release = 2,Castpart = down,nc_data_set_type = ctd,nc_ext = ctd,nc_title = IFM-GEOMAR PO-processed CTD data,nc_ship_name = FS Meteor III,nc_pi_name = Olaf Pfannkuche,nc_cruise_leg = 1,nc_chief_scientist = Olaf Pfannkuche,nc_author = Gerd Krahmann,nc_contact = gkrahmann@geomar.de,nc_data_type = station data,nc_source = CTD profile observation,nc_institution = IFM-GEOMAR,nc_institution_references = http://www.geomar.de/ ,nc_comment = Salinity and Oxygen data was calibrated with settings from subsequent cruise ! Estimated uncertainties for S and O are thus raised. Oxygen values at low levels are biased high.,nc_references = ,nc_history = created during CTD processing,nc_cdm_data_type = Station,nc_quality_control_indicator = 5,nc_quality_index = A,nc_project = SFB754,nc_uncertainty_p = 2.000000,nc_uncertainty_t = 0.002000,nc_uncertainty_s = 0.005000,nc_uncertainty_o = 3.000000
DOI: 10.1594/pangaea.890362
title: Physical oceanography during Meteor cruise M82/1

description: Hydrographic observations in the Irminger Basin, the Denmark Strait and the Labrador Sea during 3. July - 2. August 2010 from Meteor cruise 82/1.
DOI: 10.17188/1207563
title: Materials Data on Cr2CuSe4 by Materials Project

description: CuCr2Se4 is Spinel structured and crystallizes in the cubic Fd-3m space group. The structure is three-dimensional. Cr3+ is bonded to six equivalent Se2- atoms to form CrSe6 octahedra that share corners with six equivalent CuSe4 tetrahedra and edges with six equivalent CrSe6 octahedra. All Cr–Se bond lengths are 2.53 Å. Cu2+ is bonded to four equivalent Se2- atoms to form CuSe4 tetrahedra that share corners with twelve equivalent CrSe6 octahedra. The corner-sharing octahedral tilt angles are 57°. All Cu–Se bond lengths are 2.39 Å. Se2- is bonded in a distorted rectangular see-saw-like geometry to three equivalent Cr3+ and one Cu2+ atom.
DOI: 10.17188/1275871
title: Materials Data on CrAgSe2 by Materials Project

description: AgCrSe2 is Ilmenite-like structured and crystallizes in the trigonal R3m space group. The structure is three-dimensional. Cr3+ is bonded to six Se2- atoms to form distorted edge-sharing CrSe6 pentagonal pyramids. There are three shorter (2.53 Å) and three longer (2.62 Å) Cr–Se bond lengths. Ag1+ is bonded in a 4-coordinate geometry to four Se2- atoms. There are one shorter (2.57 Å) and three longer (2.87 Å) Ag–Se bond lengths. There are two inequivalent Se2- sites. In the first Se2- site, Se2- is bonded in a distorted rectangular see-saw-like geometry to three equivalent Cr3+ and one Ag1+ atom. In the second Se2- site, Se2- is bonded to three equivalent Cr3+ and three equivalent Ag1+ atoms to form distorted edge-sharing SeCr3Ag3 octahedra.
DOI: 10.17188/1355209
title: Materials Data on Mn(CrSe2)2 by Materials Project

description: Mn(CrSe2)2 crystallizes in the monoclinic C2/m space group. The structure is three-dimensional. Cr3+ is bonded to six Se2- atoms to form CrSe6 octahedra that share corners with six equivalent MnSe6 octahedra, edges with six equivalent CrSe6 octahedra, and a faceface with one MnSe6 octahedra. The corner-sharing octahedra tilt angles range from 48–51°. There are a spread of Cr–Se bond distances ranging from 2.52–2.62 Å. Mn2+ is bonded to six Se2- atoms to form MnSe6 octahedra that share corners with twelve equivalent CrSe6 octahedra, edges with two equivalent MnSe6 octahedra, and faces with two equivalent CrSe6 octahedra. The corner-sharing octahedra tilt angles range from 48–51°. There are two shorter (2.63 Å) and four longer (2.69 Å) Mn–Se bond lengths. There are two inequivalent Se2- sites. In the first Se2- site, Se2- is bonded to three equivalent Cr3+ and two equivalent Mn2+ atoms to form a mixture of distorted corner and edge-sharing SeMn2Cr3 trigonal bipyramids. In the second Se2- site, Se2- is bonded in a rectangular see-saw-like geometry to three equivalent Cr3+ and one Mn2+ atom.
DOI: 10.25581/ornlsfa.014/1459186
title: Fine-Root Ecology Database (FRED): A Global Collection of Root Trait Data with Coincident Site, Vegetation, Edaphic, and Climatic Data, Version 3.

description: To address the need for a centralized root trait database, we compiled the Fine-Root Ecology Database (FRED) from published and unpublished data sources. We have continued to add to the FRED database since the release of FRED 2.0 in 2018, and a new version of FRED is now available. FRED 3.0 has more than 150,000 observations of more than 330 root traits, with data collected from more than 1400 data sources. FRED 3.0 has 45% more root trait observations than FRED 2.0, particularly in the categories of root anatomy, morphology, and microbial associations; ancillary data on associated site, vegetation, edaphic, and climatic conditions from across the globe have also increased concurrently. FRED is focused on fine roots (traditionally defined as roots less than 2 mm in diameter), as coarse roots are studied using different methodology, often at very different scales, and have different traits and trait interpretations. However, FRED accepts data collected from roots of all sizes, and already contains several observations of coarse roots. Data collection will continue for the foreseeable future.
DOI: 10.25919/5d39e494936c6
title: Sheep genome variants V2

description: High quality variants from 935 sheep genomes
DOI: 10.48329/gcgx-f815
title: CPRD Aurum February 2022

description: The CPRD Aurum database contains longitudinal routinely-collected electronic health records (EHR data) from UK primary care practices using EMIS Web® general practice patient management software. The database captures information on demographic characteristics; diagnoses and symptoms; drug exposures; vaccination history; laboratory tests; and referrals to hospital and specialist care. Access to anonymised data from CPRD is subject to a full licence agreement containing detailed terms and conditions of use. Anonymised patient datasets can be extracted for researchers against specific study specifications, following protocol approval. Further information is available at https://www.cprd.com/data-access.
DOI: 10.48529/hhm5-sc56
title: Global Financial Inclusion (Global Findex) Database 2021
title: WLD_2021_FINDEX_v01_M
DOI: 10.5281/zenodo.10978768
title: Result files for boundary inversion of Sherrill et al. (2024)

description: This repository of text files contains major results displayed in figures in Sherrill, Johnson, and Jackson (2024, submitted) manuscript titled “Locating Boundaries Between Locked and Creeping Regions at Nankai and Cascadia Subduction Zones” submitted to Journal of Geophysical Research — Solid Earth.
DOI: 10.5281/zenodo.11048201
title: isoTWAS models for 48 GTEx models (04/2024)

description: This folder contains isoTWAS and TWAS models for 48 tissues in GTEx (April 2024). The GTEx folder contains two subfolders with .RDS files for isoTWAS and TWAS models. Models were trained using R package isotwas (github.com/bhattacharya-a-bt/isotwas).
DOI: 10.5281/zenodo.11481972
title: Barley as a production platform for oral vaccines in sustainable fish aquaculture

description: Experimental data for the study "Barley as a production platform for oral vaccines in sustainable fish aquaculture"
DOI: 10.5281/zenodo.12736705
title: Impact of public health expenditure on malnutrition among Peruvians during the period 2010-2020: A panel data analysis

description: Background: The study analyzes the impact of public health spending on malnutrition among Peruvians, using data from the National Household Survey, the Central Reserve Bank of Peru, the National Institute of Statistics and Informatics and the Ministry of Economy and Finance from 2010. -2020. Previous studies have revealed the existing relationship of health spending with the reduction of malnutrition.

Methods: A quantitative approach is considered, with an explanatory type of research using panel data methodology considering the bidimensionality of the data, which allows quantifying this effect for the Peruvian case using the National Household Survey, data from the Central Reserve Bank of Peru, as well as information from the National Institute of Statistics and Informatics and the Transparency Portal of the Ministry of Economy and Finance in the period 2010-2020. 

Results: The results show that public expenditure on health has a negative relationship with malnutrition; the rural sector has a positive relationship with malnutrition given the limitations present for access to adequate food. Similarly, the unemployment rate shows a positive relationship with malnutrition, given that being unemployed leads to a higher cause of malnutrition in the population, and the gross domestic product has a negative relationship with malnutrition, given that greater economic growth produces an impact on reducing malnutrition, with the greatest impact being on the rural population and the gross domestic product. 

Conclusions: In the analysis period 2010-2020 in Peru, based on the panel data analysis, the impact of public health expenditure on reducing malnutrition is observed in 10 departments, achieving a reduction in malnutrition; while in 14 departments, this indicator has not been reduced.
DOI: 10.5281/zenodo.13362537
title: ChromaFold minimum dataset

description: The identification of cell-type-specific 3D chromatin interactions between regulatory elements can help to decipher gene regulation and to interpret the function of disease-associated non-coding variants. However, current chromosome conformation capture (3C) technologies are unable to resolve interactions at this resolution when only small numbers of cells are available as input. We therefore present ChromaFold, a deep learning model that predicts 3D contact maps, including regulatory interactions, from single-cell ATAC sequencing (scATAC-seq) data alone. ChromaFold uses pseudobulk chromatin accessibility, co-accessibility profiles across metacells, and predicted CTCF motif tracks as input features and employs a lightweight architecture to enable training on standard GPUs. Once trained on paired scATAC-seq and Hi-C data in human cell lines and tissues, ChromaFold can accurately predict both the 3D contact map and peak-level interactions across diverse human and mouse test cell types. In benchmarking against a recent deep learning method that uses bulk ATAC-seq, DNA sequence, and CTCF ChIP-seq to make cell-type-specific predictions, ChromaFold yields superior prediction performance when including CTCF ChIP-seq data as an input and comparable performance without. Finally, fine-tuning ChromaFold on paired scATAC-seq and Hi-C in a complex tissue enables deconvolution of chromatin interactions across cell subpopulations. ChromaFold thus achieves state-of-the-art prediction of 3D contact maps using scATAC-seq alone as input data, enabling accurate inference of cell-type-specific interactions in settings where 3C-based assays are infeasible.
description: The data preprocessing pipeline of both input files and target Hi-C normalization can be found at github page.

This folder contains the minimum sample dataset of running ChromaFold, including



Input files: processed ATAC files, CTCF motif files as model input

Target file: HiC-DC+ normalized Hi-C contact map as training target


A small subset of chromosome 19 can be found at github data page.
DOI: 10.6084/m9.figshare.26097055
title: Code: Evolutionary cycles in a model of nestmate recognition

description: Nestmate recognition is a wide-spread phenomenon and evolutionary important trait in the social insects. Yet evidence accumulates that the responses to non-nestmates varies more than previously thought. We present a simple frequency-dependent cost-benefit model of nestmate recognition to understand conditions that might or might not favor the evolution of nestmate recognition that is based on cuticular hydrocarbon (CHC) profiles. Costs accounted for are costs for (i) maintaining a functional recognition system and (ii) keeping a CHC profile that may be sub-optimal regarding other functionalities like desiccation control, whereas the benefit of recognition is the prevention of nest raiding by other colonies. Unsurprisingly, the model indicates that recognition systems only evolve if costs are sufficiently low and benefits sufficiently high. In addition, the model suggests that nestmate recognition is more likely to evolve if colony turnover is fast (colony life-expectancy is low). Our model creates evolutionary cycles that are typically longest under parameter combinations that just allow the evolution of recognition systems at all; the system expresses attributes of a rock-paper-scissors game. The model shows that a breakdown of nestmate recognition may occur under changing ecological situations, e.g. as a result of reduced intraspecific competition or increased abiotic stress. We speculate that such effects may be involved in the formation of supercolonies during invasions. Nestmate recognition may have evolved more to prevent interspecific predation or parasitism by antagonists that managed to mimic their host's CHC profile than as a mechanism to prevent exploitation by conspecific colonies.
DOI: 10.6084/m9.figshare.27308574
title: Supplementary Material for: Association between hidradenitis suppurativa and gout: a propensity-score-matched cohort study

description: Abstract
Introduction 
While an association between hidradenitis suppurativa (HS) and inflammatory arthritis has been reported in clinical studies, the potential link between HS and gout remains uncertain. As HS and gout share common immunological pathways, we conducted a retrospective cohort study to determine whether HS patients are at an increased risk of developing gout in the future.

Methods
This retrospective multicenter cohort study obtained information through the US collaborative network, a subset of the TriNetX research network. Patients diagnosed with HS between January 01, 2005, and December 31, 2017, were recruited, and a 1:1 propensity score matching was conducted to identify appropriate controls. The hazard ratio for the new-onset of gout in HS patients was subsequently calculated.

Results
Compared to individuals without HS, those with HS were associated with a 1.39-fold higher risk (95% CI, 1.20, 1.62) of developing new-onset gout within five years after the index date. This association remained significant in shorter follow-up times and sensitivity analyses utilizing different matching models. For both male and female HS patients, the risk of developing new-onset gout within 5 years after the index date was statistically significant, with respective hazard ratios of 1.61 (95% CI, 1.28,2.02) for males and 1.41 (95% CI, 1.11,1.78) for females.

Conclusion
HS patients are at a high risk of developing gout within five years after an HS diagnosis while comparing with non-HS controls.
DOI: 10.25925/20210108
title: Multi-laboratory compilation of atmospheric carbon dioxide data for the years 2020-2021; obspack_co2_1_NRT_v6.1_2021-02-02

description: A full list of all contributors for this product can be found at www.esrl.noaa.gov/gmd/ccgg/obspack/providerlist/obspack_co2_1_NRT_v6.1_2021-02-02.html This product is constructed using the Observation Package (ObsPack) framework [Masarie et al., 2014; www.earth-syst-sci-data.net/6/375/2014/]. The framework is designed to bring together atmospheric greenhouse gas (GHG) observations from a variety of sampling platforms, prepare them with specific applications in mind, and package and distribute them in a self-consistent and well-documented product. ObsPack products are intended to support GHG budget studies and represent a new generation of cooperative value-added GHG data products.
DOI: 10.1594/pangaea.883631
title: Physical oceanography during POSEIDON cruise POS486
DOI: 10.1594/pangaea.890702
title: Physical oceanography during VALDIVIA cruise VA160

description: Hydrographic observations in the North-East Atlantic during 5. - 16. July 1996 from Valdivia cruise 160.
DOI: 10.17026/dans-zcd-m9dh
title: COVID RADAR app

description: Over a period of 2 years, a total of 280.000 Dutch inhabitants filled in a short questionnaire about Corona-related symptoms, behavior, vaccinationstatus and test result.In this dataset the postcode is deleted, because of privacy reasons. If researches would like to use the dataset with the postcode included, please contact us
DOI: 10.17632/ctr8g6gtny.1
title: Concentrations of Delta 9-tetrahydrocannabinol (THC) in oral fluid at different time points after use

description: This data is a meta-analysis of 7 studies where subjects were administered natural cannabis in a controlled setting, with Oral Fluid (OF) drug tests showing the exact THC concentrations in OF for each subject for at least two time points after cannabis administration using confirmatory methods. Summary statistics showed OF THC concentrations by time after use were highly dispersed at every time point, positively skewed, and declined over time. Many positive THC OF concentrations were found after 24-hours in one study, but most studies did not conduct observations past 24 hours. In a multivariate analysis, we found that increased dose, increased frequency of cannabis use, and inhaled (versus ingested) cannabis were statistically related to higher OF THC concentrations. OF collection device (i.e. intercept DOA versus expectorant) and sex (i.e. male versus female) were only significant in a bivariate analysis.
DOI: 10.17632/fkkpppm35m.1
title: 693-member space barrel structure

description: Sap2000 files (steel and aluminum versions) of 693-member space barrel structure.
DOI: 10.21338/ess1e06_7
title: ESS1 - integrated file, edition 6.7
DOI: 10.23720/bt2023/2316166
title: Chapter 1: Background and Introduction

description: Langholtz, M. H. 2024. “Chapter 1: Background and Introduction.” In 2023 Billion‐Ton Report. M. H. Langholtz (Lead). Oak Ridge, TN: Oak Ridge National Laboratory. doi: 10.23720/BT2023/2316166.
DOI: 10.3886/e184423v1
title: Code for: "The Behavioral Foundations of Default Effects: Theory and Evidence from Medicare Part D"

description: This is a repository for the code to replicate "The Behavioral Foundations of Default Effects: Theory and Evidence from Medicare Part D" in the American Economic Review.<br><br>The abstract of the paper is:<br><br>We show in two natural experiments that default rules in Medicare Part D have large, persistent effects on enrollment and drug utilization of low-income beneficiaries. The implications of this phenomenon for welfare and optimal policy depend on the sensitivity of passivity to the value of the default option. Using random assignment to default options, we show that beneficiary passivity is extremely insensitive, even when enrolling in the default option would result in substantial drug consumption losses. A third natural experiment suggests that variation in active choice is driven by random transitory shocks rather than the inherent attentiveness of some beneficiaries.<br>
description: Low-Income Subsidy recipients enrolled in the Medicare program, 2007-2015.
DOI: 10.5069/g97d2sb0
title: Marlborough, New Zealand 2020-2022
DOI: 10.5281/zenodo.10968041
title: Initiation of downward positive leader beneath the negative leader channel

description: The data supports the manuscript entitled "Initiation of downward positive leader beneath the negative leader channel" and MATLAB can open these *.fig and *.mat files.

MATLAB Code ReadTdms.m can open these *.tdms. The data of *.cine can be opened by  Phantom Camera Control software that can be download from this link:  

https://www.phantomhighspeed.com/resourcesandsupport/phantomresources/pccsoftware  

The data can be used freely for scientific purposes with the appropriate citation.
DOI: 10.5281/zenodo.11312846
title: data for submission to GRL by Tu et al.

description: Turbulence, salinity, temperature, and velocity data used in Figures 2, 3, and 4 were presented in turbulence_binned1.mat, ST_binned.mat, and velocity1.mat. The echosounder images used in Figure 3 were presented in echo_sounder.zip.
DOI: 10.5281/zenodo.12359650
title: The illicit cigarette market in the DRC: datasets from a cross-sectional study of empty cigarette packs

description: This study aimed to estimate the proportion of cigarettes consumed in the DRC that are illicit and the extent of cigarette tax evasion; and to identify the origins of and factors associated with illicit cigarettes.

Stratified, multistage sampling was used to select 32 health areas across eight provinces in the DRC from which empty cigarette packs were collected. Each collected pack was examined and classified as licit if it complied, or illicit if it did not comply with the DRC’s tax stamp or written health warning requirements; or the requirements to have a notice indicating the prohibition of sale by/to minors or information on tar and nicotine content. Cigarette retail price information was also collected for each brand represented within the collected empty packs. Data was collected from May 15 to June 9, 2023. 

'Dataset_allpacks ORIGINAL' contains the data for each collected empty pack

'Explanation_dataset_allpacks' is the codebook that explains the variables in 'Dataset_allpacks ORIGINAL'

'Dataset_retailers' contains the data collected from retailers, including cigarette retail prices

'Explanation_dataset_retailers' is the codebook that explains the variables in 'Dataset_retailers'
DOI: 10.5281/zenodo.13284686
title: Data for "Source Altitude of Energetic In-cloud Pulses Inside Thunderstorms and Implication for the Intrinsic Brightness of Terrestrial Gamma-Ray Flashes"

description: The spreadsheet contains detailed information for the EIP events analyzed in this work, including the time, location, peak current, distance to sensors, estimated source height, height error, etc. 

The compressed file in this dataset contains the low-frequency waveforms of EIPs measured by Duke and FIT sensors. The modeled skywaves are shown in the figures. The cross-correlation coefficient between the measured skywaves and the modeled waveforms of each event are also presented.
DOI: 10.5281/zenodo.13690183
title: Data and code for: Bacterial community structure modulates soil phosphorus turnover at early stages of primary succession