cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26601781
title: Additional file 10 of The time-course of cancer cachexia onset reveals biphasic transcriptional disruptions in female skeletal muscle distinct from males

description: Additional file 10. Female vs Male Mitocarta Comparison.
DOI: 10.5281/zenodo.13310435
title: Dataset for the publication "Reversing the magnetization of 50-nm-wide ferromagnets by ultrashort magnons in thin-film Yttrium Iron Garnet"

description: Dataset belonging to the manuscript "Reversing the magnetization of 50-nm-wide ferromagnets by ultrashort magnons in thin-film Yttrium Iron Garnet" published in Nanoscale Horizons, doi: https://doi.org/10.1039/D4NH00095A

Every specific folder contains a text file that explains the measurement parameters and file formats.

Abstract:

Spin waves (magnons) can enable neuromorphic computing by which one aims at overcoming limitations inherent to conventional electronics and the von Neumann architecture. Encoding magnon signal by reversing magnetization of a nanomagnetic memory bit is pivotal to realize such novel computing schemes efficiently. A magnonic neural network was recently proposed consisting of differently configured nanomagnets that control nonlinear magnon interference in an underlying yttrium iron garnet (YIG) film [Papp et al., Nature communications, 2021, 12, 6422]. In this study, we explore the nonvolatile encoding of magnon signals by switching the magnetization of periodic and aperiodic arrays (gratings) of Ni81Fe19 (Py) nanostripes with widths w between 50 nm and 200 nm. Integrating 50-nm-wide nanostripes with a coplanar waveguide, we excited magnons having a wavelength λ of ≈100 nm. At a small spin-precessional power of 11 nW, these ultrashort magnons switch the magnetization of 50-nm-wide Py nanostripes after they have propagated over 25 μm in YIG. We also demonstrate the magnetization reversal of nanostripes patterned in an aperiodic sequence. We thereby show that the magnon-induced reversal happens regardless of the width and periodicity of the nanostripe gratings. Our study enlarges substantially the parameter regime for magnon-induced nanomagnet reversal on YIG and is important for realizing in-memory computing paradigms making use of magnons with ultrashort wavelengths at low power consumption."
DOI: 10.5281/zenodo.13310436
title: Dataset for the publication "Reversing the magnetization of 50-nm-wide ferromagnets by ultrashort magnons in thin-film Yttrium Iron Garnet"

description: Dataset belonging to the manuscript "Reversing the magnetization of 50-nm-wide ferromagnets by ultrashort magnons in thin-film Yttrium Iron Garnet" published in Nanoscale Horizons, doi: https://doi.org/10.1039/D4NH00095A

Every specific folder contains a text file that explains the measurement parameters and file formats.

Abstract:

Spin waves (magnons) can enable neuromorphic computing by which one aims at overcoming limitations inherent to conventional electronics and the von Neumann architecture. Encoding magnon signal by reversing magnetization of a nanomagnetic memory bit is pivotal to realize such novel computing schemes efficiently. A magnonic neural network was recently proposed consisting of differently configured nanomagnets that control nonlinear magnon interference in an underlying yttrium iron garnet (YIG) film [Papp et al., Nature communications, 2021, 12, 6422]. In this study, we explore the nonvolatile encoding of magnon signals by switching the magnetization of periodic and aperiodic arrays (gratings) of Ni81Fe19 (Py) nanostripes with widths w between 50 nm and 200 nm. Integrating 50-nm-wide nanostripes with a coplanar waveguide, we excited magnons having a wavelength λ of ≈100 nm. At a small spin-precessional power of 11 nW, these ultrashort magnons switch the magnetization of 50-nm-wide Py nanostripes after they have propagated over 25 μm in YIG. We also demonstrate the magnetization reversal of nanostripes patterned in an aperiodic sequence. We thereby show that the magnon-induced reversal happens regardless of the width and periodicity of the nanostripe gratings. Our study enlarges substantially the parameter regime for magnon-induced nanomagnet reversal on YIG and is important for realizing in-memory computing paradigms making use of magnons with ultrashort wavelengths at low power consumption."
DOI: 10.6084/m9.figshare.26601769.v1
title: Additional file 6 of The time-course of cancer cachexia onset reveals biphasic transcriptional disruptions in female skeletal muscle distinct from males

description: Additional file 6. Female vs Male DESeq.
DOI: 10.15468/dl.5er3jp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.101632 -36.928205, 149.101632 -36.930451, 149.106124 -36.930451, 149.106124 -36.928205, 149.101632 -36.928205))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066741-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ufvyaa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.773746 -32.497243, 148.773746 -32.503981, 148.775991 -32.503981, 148.775991 -32.497243, 148.773746 -32.497243))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066742-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26568943
title: Additional file 1 of Paleomagnetic constraint of the age and duration of the Taupō Eruption, New Zealand

description: Additional file 1: Table S1. Paleomagnetic data for each sample (cube). Samples showing large MAD values (&gt;10°: Italic) were rejected for the calculation of Unit (site) mean directions (see main text).
DOI: 10.6084/m9.figshare.26601901.v1
title: Additional file 4 of Genomic sequencing of fourteen Bacillus thuringiensis isolates: insights into geographic variation and phylogenetic implications

description: Additional file 4.txt. Contigs culled from Canu-based IBL03111 assembly. Contigs from IBL03111 lacking similarity to IBL01313 and that may have been assembly artifacts.
DOI: 10.15468/dl.7nk8vm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.557529 -32.497243, 149.557529 -32.499489, 149.562021 -32.499489, 149.562021 -32.503981, 149.564267 -32.503981, 149.564267 -32.497243, 149.557529 -32.497243))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066745-240626123714530/datasets/export for details.
DOI: 10.15468/dl.52b2sd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.603916 -36.930451, 143.603916 -36.934942, 143.606162 -36.934942, 143.606162 -36.930451, 143.603916 -36.930451)), ((143.606162 -36.934942, 143.606162 -36.937188, 143.608408 -36.937188, 143.608408 -36.934942, 143.606162 -36.934942)), ((143.608408 -36.937188, 143.608408 -36.939434, 143.6129 -36.939434, 143.6129 -36.937188, 143.608408 -36.937188)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066744-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26601901
title: Additional file 4 of Genomic sequencing of fourteen Bacillus thuringiensis isolates: insights into geographic variation and phylogenetic implications

description: Additional file 4.txt. Contigs culled from Canu-based IBL03111 assembly. Contigs from IBL03111 lacking similarity to IBL01313 and that may have been assembly artifacts.
DOI: 10.15468/dl.b964kg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.104729 -36.930451, 144.104729 -36.937188, 144.109221 -36.937188, 144.109221 -36.930451, 144.104729 -36.930451))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066746-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26601862
title: Additional file 1 of A lipid metabolism-related gene signature reveals dynamic immune infiltration of the colorectal adenoma-carcinoma sequence

description: Supplementary Material 1
DOI: 10.15468/dl.s37hw5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.580607 -32.492752, 148.580607 -32.497243, 148.587344 -32.497243, 148.587344 -32.499489, 148.582853 -32.499489, 148.582853 -32.503981, 148.58959 -32.503981, 148.58959 -32.492752, 148.580607 -32.492752))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066747-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26601862.v1
title: Additional file 1 of A lipid metabolism-related gene signature reveals dynamic immune infiltration of the colorectal adenoma-carcinoma sequence

description: Supplementary Material 1
DOI: 10.5281/zenodo.13305363
title: Annotation historische Semantik von mhd. ungehiure
title: Annotation Historical Semantics of Middle High German ungehiure

description: Der Datensatz enthält alle Daten, die als Grundlage für den Aufsatz Marion Darilek, Ungeheuerlich. Zur historischen Semantik des Monströsen am Beispiel der computergestützten Textannotation von mhd. ungehiure, in: Euphorion 118 (2024), erhoben wurden.

Die Struktur des Datensatzes und der ZIP-Dateien ist in der txt-Datei "Dokumentation_Datensatz_Annotationen_ungehiure_DEU_ENG" auf Deutsch und Englisch erläuert.

 

The dataset contains all data used as a basis for the article Marion Darilek, Ungeheuerlich. Zur historischen Semantik des Monströsen am Beispiel der computergestützten Textannotation von mhd. ungehiure, in: Euphorion 118 (2024).

The structure of the data set and of the ZIP-files is explained in the txt file "Dokumentation_Datensatz_Annotationen_ungehiure_DEU_ENG" in German and English.
DOI: 10.5281/zenodo.13305364
title: Annotation historische Semantik von mhd. ungehiure
title: Annotation Historical Semantics of Middle High German ungehiure

description: Der Datensatz enthält alle Daten, die als Grundlage für den Aufsatz Marion Darilek, Ungeheuerlich. Zur historischen Semantik des Monströsen am Beispiel der computergestützten Textannotation von mhd. ungehiure, in: Euphorion 118 (2024), erhoben wurden.

Die Struktur des Datensatzes und der ZIP-Dateien ist in der txt-Datei "Dokumentation_Datensatz_Annotationen_ungehiure_DEU_ENG" auf Deutsch und Englisch erläuert.

 

The dataset contains all data used as a basis for the article Marion Darilek, Ungeheuerlich. Zur historischen Semantik des Monströsen am Beispiel der computergestützten Textannotation von mhd. ungehiure, in: Euphorion 118 (2024).

The structure of the data set and of the ZIP-files is explained in the txt file "Dokumentation_Datensatz_Annotationen_ungehiure_DEU_ENG" in German and English.
DOI: 10.6073/pasta/920c200ed6b3dd3dea83e8a62e5dff44
title: Blarina brevicauda populations in three different habitats in east-central Illinois, 1972 to 1997.

description: The population demography of the northern short-tailed shrew, Blarina brevicauda, was monitored monthly from 1972-1997 in bluegrass, alfalfa, and tallgrass prairie habitats in east-central Illinois. Blarina brevicauda were incidentally collected as part of a 25-year prairie vole (Microtus ochrogaster) and meadow vole (M. pennsylvanicus) trapping study. The study sites were located in the University of Illinois Biological Research Area (Phillips Tract) and Trelease Prairie. Animals were trapped with wooden multiple-capture live-traps. Over the span of 25 years, three 3-day trapping sessions monthly were conducted to cover the three habitats. All live shrews were toe-clipped at first capture for individual identification. Animals known to be present on study site, but not captured, were included in totals for that month. While trap mortality of shrews was high in this study (40%), the data obtained were sufficient for analysis of many aspects of the demography of the species.
DOI: 10.6084/m9.figshare.26601811
title: Additional file 1 of Myofiber directs macrophages IL-10-Vav1-Rac1 efferocytosis pathway in inflamed muscle following CTX myoinjury by activating the intrinsic TGF-β signaling

description: Additional file 1: Myofiber directs macrophages IL-10-Vav1-Rac1 efferocytosis pathway in inflamed muscle following CTX myoinjury by arousing intrinsic TGF-β signaling. Fig.S1. Construction and identification of SM TGF-βr2−/−mice. Genomic PCR identification of SM TGF-βr2−/− mice was showed. MCK-Cre+/TGF-βr2flox/wt: the lanes 1, 4, 7, 8, 10; MCK-Cre+/TGF-βr2flox/flox : the lanes 3, 5, 9; MCK-Cre+/TGF-βr2wt/wt: the lanes 2, 6; Western blots analysis of TGF-βr2 protein expression in myocardium, gastrocnemius, tibialis anterior muscle and immunofluorescence staining resultsof TGF-βr2 protein expression in tibialis anterior muscle between controlandSM TGF-βr2−/− mice. Statistical data were expressed as the mean± SD. Multiple comparisons were analyzed by One-way ANOVA. Bar = 50 μm. Fig.S2. Immunofluorescence double-staining results of eMHC and Dystrophin in inflamed TA muscle from SM TGF-βr2-/- and control mice. The mean fluorescence intensity of eMHC was quantified. Statistical data were expressed as the mean±SD. Multiple comparisons were analyzed by One-way ANOVA. Bar = 50 μm. Fig.S3. Myofiber specific TGF-β signaling has no effect on the recognition signaling of apoptotic cells. FACS analysis of the expression of eat-me signal in apoptotic cellsand no-eat-me signal in living cellsin inflamed muscle from control and SM TGF-βr2-/- mice. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD. Fig.S4. Myofiber TGF-β signaling shows no effect on the nuclear engulfment receptor associated-efferocytosis signaling in macrophage. FACS analysis of the expression of PPARγ and CD36 in macrophage sorted from inflamed muscle, between SM TGF-βr2-/- and control mice. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD. Fig.S5. Immunofluorescence staining demonstrates the effects of myofiber TGF-β-IL-10 signaling on M2 phenotypeand efferocytosis molecules expressionin macrophages co-cultured with TGF-βr2−/−- or control-MPC-Myotubes, exposed to pro-inflammatory milieu, treated with or without SRI, rmIL-10 or AS101, respectively. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD.. Bar = 50 μm. Fig.S6. A proposed model depicting the mechanism by which myofibers modulating IL-10-Vav1-Rac1 macrophages efferocytosis signaling pathway in inflamed muscle through activating the intrinsic TGF-β signaling.
DOI: 10.6084/m9.figshare.26569003
title: Additional file 1 of Phenylacetyl glutamine: a novel biomarker for stroke recurrence warning

description: Additional file 1: Table S1. Baseline characteristics of the cohort.
DOI: 10.15468/dl.q6fvhe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((144.403421 -36.930451, 144.403421 -36.939434, 144.405667 -36.939434, 144.405667 -36.937188, 144.410158 -36.937188, 144.410158 -36.934942, 144.416896 -36.934942, 144.416896 -36.930451, 144.403421 -36.930451))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066748-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26601811.v1
title: Additional file 1 of Myofiber directs macrophages IL-10-Vav1-Rac1 efferocytosis pathway in inflamed muscle following CTX myoinjury by activating the intrinsic TGF-β signaling

description: Additional file 1: Myofiber directs macrophages IL-10-Vav1-Rac1 efferocytosis pathway in inflamed muscle following CTX myoinjury by arousing intrinsic TGF-β signaling. Fig.S1. Construction and identification of SM TGF-βr2−/−mice. Genomic PCR identification of SM TGF-βr2−/− mice was showed. MCK-Cre+/TGF-βr2flox/wt: the lanes 1, 4, 7, 8, 10; MCK-Cre+/TGF-βr2flox/flox : the lanes 3, 5, 9; MCK-Cre+/TGF-βr2wt/wt: the lanes 2, 6; Western blots analysis of TGF-βr2 protein expression in myocardium, gastrocnemius, tibialis anterior muscle and immunofluorescence staining resultsof TGF-βr2 protein expression in tibialis anterior muscle between controlandSM TGF-βr2−/− mice. Statistical data were expressed as the mean± SD. Multiple comparisons were analyzed by One-way ANOVA. Bar = 50 μm. Fig.S2. Immunofluorescence double-staining results of eMHC and Dystrophin in inflamed TA muscle from SM TGF-βr2-/- and control mice. The mean fluorescence intensity of eMHC was quantified. Statistical data were expressed as the mean±SD. Multiple comparisons were analyzed by One-way ANOVA. Bar = 50 μm. Fig.S3. Myofiber specific TGF-β signaling has no effect on the recognition signaling of apoptotic cells. FACS analysis of the expression of eat-me signal in apoptotic cellsand no-eat-me signal in living cellsin inflamed muscle from control and SM TGF-βr2-/- mice. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD. Fig.S4. Myofiber TGF-β signaling shows no effect on the nuclear engulfment receptor associated-efferocytosis signaling in macrophage. FACS analysis of the expression of PPARγ and CD36 in macrophage sorted from inflamed muscle, between SM TGF-βr2-/- and control mice. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD. Fig.S5. Immunofluorescence staining demonstrates the effects of myofiber TGF-β-IL-10 signaling on M2 phenotypeand efferocytosis molecules expressionin macrophages co-cultured with TGF-βr2−/−- or control-MPC-Myotubes, exposed to pro-inflammatory milieu, treated with or without SRI, rmIL-10 or AS101, respectively. Multiple comparisons were analyzed by One-way ANOVA. Statistical data were expressed as mean±SD.. Bar = 50 μm. Fig.S6. A proposed model depicting the mechanism by which myofibers modulating IL-10-Vav1-Rac1 macrophages efferocytosis signaling pathway in inflamed muscle through activating the intrinsic TGF-β signaling.
DOI: 10.15468/dl.keuu6r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.636752 -32.499489, 148.636752 -32.503981, 148.643489 -32.503981, 148.643489 -32.499489, 148.636752 -32.499489))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066749-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26569003.v1
title: Additional file 1 of Phenylacetyl glutamine: a novel biomarker for stroke recurrence warning

description: Additional file 1: Table S1. Baseline characteristics of the cohort.
DOI: 10.6084/m9.figshare.26568982.v1
title: Additional file 5 of N-thiocarboxyanhydrides, amino acid-derived enzyme-activated H2S donors, enhance sperm mitochondrial activity in presence and absence of oxidative stress

description: Additional file 5: Dataset Experiment IIb Sperm motile subpopulations.
DOI: 10.6084/m9.figshare.26568919
title: Additional file 4 of Long non-coding RNA CCL14-AS suppresses invasiveness and lymph node metastasis of colorectal cancer cells by regulating MEP1A

description: Additional file 4: Table S1. List of cancer-related lncRNAs (lncRNAs differently expressed in CRC tissues compared with).
DOI: 10.15468/dl.g7zgz3
title: Occurrence Download

description: A dataset containing 5959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anura",
 "GadmGid is one of (IDN.25_1, IDN.26_1, IDN.27_1, IDN.28_1, IDN.29_1, IDN.6_1)",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Material citation, Specimen, Occurrence evidence)",
 "HasGeospatialIssue is false",
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 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5959 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026482-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rahvc2
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oryza officinalis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026483-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9t6s3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parkinsonia aculeata",
 "Country is Cambodia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026484-250920141307145/datasets/export for details.
DOI: 10.15468/dl.72gwrb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parkinsonia aculeata",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026486-250920141307145/datasets/export for details.
DOI: 10.15468/dl.evgbq6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parkinsonia aculeata",
 "Country is Congo",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026485-250920141307145/datasets/export for details.
DOI: 10.5281/zenodo.16415087
title: Supplementary files for "The Naibbe cipher: a substitution cipher that encrypts Latin and Italian as Voynich Manuscript–like ciphertext"

description: This repository contains code and datasets associated with the paper:



Greshko, Michael A. (2025). The Naibbe cipher: a substitution cipher that encrypts Latin and Italian as Voynich Manuscript–like ciphertext. Cryptologia. https://doi.org/10.1080/01611194.2025.2566408


In the work represented here and in the associated study, I investigate the hypothesis that the Voynich Manuscript (MS 408, Yale University Beinecke Library) is compatible with being a ciphertext by attempting to develop a historically plausible cipher that can replicate the manuscript’s unusual properties. The resulting cipher—a verbose homophonic substitution cipher I call the Naibbe cipher—can be done entirely by hand with 15th-century materials, and when it encrypts a wide range of Latin and Italian plaintexts, the resulting ciphertexts remain fully decipherable and also reliably reproduce many key statistical properties of the Voynich Manuscript at once. My results suggest that the so-called “ciphertext hypothesis” for the Voynich Manuscript remains viable, while also placing constraints on plausible substitution cipher structures.