cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7149902.v1
title: Nephrops norvegicus sampling

description: Dataset related to size distribution of all individuals; also growth and distance moved of tagged individuals; positions of all pots bearing tagged, untagged, v-notched individuals as well as zero catch information (to enable catch-per-unit-effort or density calculations). This dataset enables growth to be linked with CPUE or density calculations in N. norvegicus.
DOI: 10.7284/111706
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1212 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109389
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1212 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109390
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1212 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109391
title: Gyrocompass data collected during research cruise WS1212 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109398
title: INS (Inertial Navigation System) data collected during research cruise WS1212 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109392
title: Radiometer data collected during research cruise WS1212 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109393
title: Radiometer data collected during research cruise WS1212 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109397
title: Radiometer data collected during research cruise WS1212 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109396
title: Rain Gauge data collected during research cruise WS1212 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109394
title: Water Temperature data collected during research cruise WS1212 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109395
title: TSG (Thermosalinograph) data collected during research cruise WS1212 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129709
title: Multiplexed data collected during research cruise WS1213 using a Miami VIDS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129704
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1213 using a RDI BB-600 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129705
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise WS1213 using a RDI OS-75 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129708
title: Anemometer data collected during research cruise WS1213 using a RM Young 05106 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111708
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1213 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129706
title: Fluorometer data collected during research cruise WS1213 using a Turner Cyclops-7 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109399
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1213 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.7284/109400
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1213 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith
DOI: 10.7284/109401
title: Gyrocompass data collected during research cruise WS1213 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/129707
title: Hygrometer data collected during research cruise WS1213 using a RM Young 41372VC instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109408
title: INS (Inertial Navigation System) data collected during research cruise WS1213 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109402
title: Radiometer data collected during research cruise WS1213 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109403
title: Radiometer data collected during research cruise WS1213 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149731
title: Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array

description: Assessing DNA methylation profiles in human blood has become a major focus of epidemiologic inquiry. Understanding variability in CpG-specific DNA methylation over moderate periods of time is a critical first step in identifying CpG sites that are candidates for DNA methylation-based etiologic, diagnostic and prognostic predictors of pathogenesis. Using the Illumina MethylationEPIC [850K] BeadArray, DNA methylation was profiled in paired whole blood samples collected approximately 1 year apart from 35 healthy women enrolled in the Nurses Study II cohort. The median intraclass correlation coefficient (ICC) across all CpG loci was 0.19 [Interquartile Range (IQR) 0.00–0.50]; 74.8% of ICCs were in the low range (0–0.5), 16.9% in the mid-range of ICCs (0.5–0.8), and 8.3% in the high-range of ICCs (0.8–1). ICCs were similar for CpG probes on the 450K Illumina array (median 0.17) and the new probes added to the 850K array (median 0.21). ICCs for CpG loci on the sex chromosomes and known metastable epialleles were high (median 0.71, 0.97, respectively), and ICCs among methylation quantitative trait loci (mQTL) CpGs were significantly higher as compared to non-mQTL CpGs (median 0.73, 0.16, respectively, <i>P</i> –<sup>16</sup>). We observed wide variation in DNA methylation stability over a 1-year period. Probes considered non-stable, due to substantial variation over a moderate period of time and with minimal variability across individuals could be removed in large epidemiological studies. Moreover, adjusting for technical variation that arises from using high-dimensional arrays is critical.
DOI: 10.7284/109407
title: Radiometer data collected during research cruise WS1213 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109406
title: Rain Gauge data collected during research cruise WS1213 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149731.v1
title: Variation in DNA Methylation of Human Blood over a 1-Year Period using the Illumina MethylationEPIC array

description: Assessing DNA methylation profiles in human blood has become a major focus of epidemiologic inquiry. Understanding variability in CpG-specific DNA methylation over moderate periods of time is a critical first step in identifying CpG sites that are candidates for DNA methylation-based etiologic, diagnostic and prognostic predictors of pathogenesis. Using the Illumina HumanMethylationEPIC [850K] BeadArray, DNA methylation was profiled in paired whole blood samples collected approximately 1 year apart from 35 healthy women enrolled in the Nurses Study II cohort. The median intraclass correlation coefficient (ICC) across all CpG loci was 0.19 [Interquartile Range (IQR) 0.00-0.50]; 74.8% of ICCs were in the low range (0-0.5), 16.9% in the mid-range of ICCs (0.5-0.8), and 8.3% in the high-range of ICCs (0.8-1). ICCs were similar for CpG probes on the 450K Illumina array (median 0.17) and the new probes added to the 850K array (median 0.21). ICCs for CpG loci on the sex chromosomes and known metastable epialleles were high (median 0.71, 0.97, respectively), and ICCs among methylation quantitative trait loci (mQTL) CpGs were significantly higher as compared to non-mQTL CpGs (median 0.73, 0.16, respectively, <i>P</i> &lt; 2 ×10<sup>−16</sup>). We observed wide variation in DNA methylation stability over a 1-year period. Probes considered non-stable, due to substantial variation over a moderate period of time and with minimal variability across individuals could be removed in large epidemiological studies. Moreover, adjusting for technical variation that arises from using high-dimensional arrays is critical.
DOI: 10.6084/m9.figshare.7149731.v2
title: Variation in DNA methylation of human blood over a 1-year period using the Illumina MethylationEPIC array

description: Assessing DNA methylation profiles in human blood has become a major focus of epidemiologic inquiry. Understanding variability in CpG-specific DNA methylation over moderate periods of time is a critical first step in identifying CpG sites that are candidates for DNA methylation-based etiologic, diagnostic and prognostic predictors of pathogenesis. Using the Illumina MethylationEPIC [850K] BeadArray, DNA methylation was profiled in paired whole blood samples collected approximately 1 year apart from 35 healthy women enrolled in the Nurses Study II cohort. The median intraclass correlation coefficient (ICC) across all CpG loci was 0.19 [Interquartile Range (IQR) 0.00–0.50]; 74.8% of ICCs were in the low range (0–0.5), 16.9% in the mid-range of ICCs (0.5–0.8), and 8.3% in the high-range of ICCs (0.8–1). ICCs were similar for CpG probes on the 450K Illumina array (median 0.17) and the new probes added to the 850K array (median 0.21). ICCs for CpG loci on the sex chromosomes and known metastable epialleles were high (median 0.71, 0.97, respectively), and ICCs among methylation quantitative trait loci (mQTL) CpGs were significantly higher as compared to non-mQTL CpGs (median 0.73, 0.16, respectively, <i>P</i> –<sup>16</sup>). We observed wide variation in DNA methylation stability over a 1-year period. Probes considered non-stable, due to substantial variation over a moderate period of time and with minimal variability across individuals could be removed in large epidemiological studies. Moreover, adjusting for technical variation that arises from using high-dimensional arrays is critical.
DOI: 10.7284/129710
title: Singlebeam Echosounder data collected during research cruise WS1213 using a Knudsen 3260 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109404
title: Water Temperature data collected during research cruise WS1213 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109405
title: TSG (Thermosalinograph) data collected during research cruise WS1213 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/111710
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise WS1214 using a Sea-Bird SBE-911+ instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109409
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1214 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109410
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1214 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109411
title: Gyrocompass data collected during research cruise WS1214 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149587
title: Additional file 5: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S3. Distribution of metagenome bases covered by SAG reads mapped against the corresponding metagenome assemblies. “Estimated False Negative Rate in Binning (%)” was calculated by dividing the number of “Bases covered within long (≥ 1 kb) non-MAG contigs” with the number of “Nucleotide bases covered within MAG contigs.” (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7149584
title: Additional file 4: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S2. Summary statistics as given by Anviâ o for all MAGs and SAGs found by both approaches. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.7149587.v1
title: Additional file 5: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S3. Distribution of metagenome bases covered by SAG reads mapped against the corresponding metagenome assemblies. “Estimated False Negative Rate in Binning (%)” was calculated by dividing the number of “Bases covered within long (≥ 1 kb) non-MAG contigs” with the number of “Nucleotide bases covered within MAG contigs.” (XLSX 10 kb)
DOI: 10.7284/109418
title: INS (Inertial Navigation System) data collected during research cruise WS1214 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149584.v1
title: Additional file 4: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S2. Summary statistics as given by Anviâ o for all MAGs and SAGs found by both approaches. (XLSX 23 kb)
DOI: 10.7284/109412
title: Radiometer data collected during research cruise WS1214 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109413
title: Radiometer data collected during research cruise WS1214 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149569
title: Additional file 1 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

description: List of samples. XLSX sheet with list of samples and the corresponding URLs and accession numbers of the raw data. (XLSX 36 kb)
DOI: 10.7284/109417
title: Radiometer data collected during research cruise WS1214 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149569.v2
title: Additional file 1 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

description: List of samples. XLSX sheet with list of samples and the corresponding URLs and accession numbers of the raw data. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.7149569.v1
title: Additional file 1 of A comprehensive analysis of 195 DNA methylomes reveals shared and cell-specific features of partially methylated domains

description: List of samples. XLSX sheet with list of samples and the corresponding URLs and accession numbers of the raw data. (XLSX 36 kb)
DOI: 10.7284/109416
title: Rain Gauge data collected during research cruise WS1214 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149560
title: Additional file 14: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S5. Statistics for chimeric SAG reads and other SAG reads mapping against SAG contigs. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7149563
title: Additional file 1: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S1. Assembly statistics and taxonomy for all MAGs and SAGs. For MAGs, â Coverage within sampleâ indicates that coverage was calculated based on the sample from where it was assembled. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7149563.v1
title: Additional file 1: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S1. Assembly statistics and taxonomy for all MAGs and SAGs. For MAGs, â Coverage within sampleâ indicates that coverage was calculated based on the sample from where it was assembled. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7149557
title: Additional file 13: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S4. Statistics for chimeric SAG reads mapping against metagenome contigs. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7149560.v1
title: Additional file 14: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S5. Statistics for chimeric SAG reads and other SAG reads mapping against SAG contigs. (XLSX 11 kb)
DOI: 10.7284/109414
title: Water Temperature data collected during research cruise WS1214 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7149557.v1
title: Additional file 13: of Genomes from uncultivated prokaryotes: a comparison of metagenome-assembled and single-amplified genomes

description: Table S4. Statistics for chimeric SAG reads mapping against metagenome contigs. (XLSX 14 kb)
DOI: 10.7284/109415
title: TSG (Thermosalinograph) data collected during research cruise WS1214 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109429
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1216 using a Raytheon 300 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109430
title: GNSS (Global Navigation Satellite System) data collected during research cruise WS1216 using a Raytheon 320 WAAS instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109431
title: Gyrocompass data collected during research cruise WS1216 using a SGB Meridian instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109438
title: INS (Inertial Navigation System) data collected during research cruise WS1216 using a Applanix POS/MV-320 V2 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109432
title: Radiometer data collected during research cruise WS1216 using a Eppley PSP instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109433
title: Radiometer data collected during research cruise WS1216 using a Eppley TUV instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109437
title: Radiometer data collected during research cruise WS1216 using a Eppley PIR instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109436
title: Rain Gauge data collected during research cruise WS1216 using a OSI ORG-815 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109434
title: Water Temperature data collected during research cruise WS1216 using a Sea-Bird SBE-38 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/109435
title: TSG (Thermosalinograph) data collected during research cruise WS1216 using a Sea-Bird SBE-45 instrument system onboard the platform RV F.G. Walton Smith

description: Original (unprocessed) data collected during a Field_expedition