cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24797265.v1
title: scRNA-sequencing raw data of LUAD

description: Chemotherapy have been widely applied to the comprehensive treatment of lung adenocarcinoma (LUAD) patients, but its effect on immune microenvironment of lung adenocarcinoma needs further study. We obtained a total of 83622 cells derived from the tumor samples of nine LUAD patients who received only surgery or neoadjuvant chemotherapy. Functional enrichment analysis revealed that chemotherapy drove significant metabolic reprogramming in tumor cells and macrophages, which explained its enhanced malignancy and tumor-promoting phenotype after neoadjuvant treatment. Moreover, through analyzing the remodeling of T and B cells induced by neoadjuvant therapy, we noted that chemotherapy ignited a relatively stronger immune cytotoxic response towards tumor cells. Besides, a series of marker genes of different cell types and driver genes motivating phenotype shifting, such as metabolic reprogramming, were identified. Also, we constructed cell-to-cell crosstalk atlas based on tumor and immune cells at the single-cell level. In summary, our study demonstrates the metabolic reprogramming within the TME of LUAD induced by chemotherapy.
DOI: 10.6084/m9.figshare.28599758.v1
title: Water quality from shrimp culture in a nursury phase.

description: Zooplankton, particularly microalgae-fed species, are optimal candidates for aquaculture nutrition and bioencapsulation vectors. <i>Haematococcus pluvialis</i> is distinguished by its high astaxanthin content in the cystic phase, while <i>Daphnia magna</i> is rich in proteins, fatty acids, chitin, and chitosan—biomolecules with antioxidant and immunostimulatory properties. This study evaluated the dietary supplementation of <i>Penaeus vannamei</i> post-larvae with <i>H. pluvialis</i> bioencapsulated in <i>D. magna</i> (DHP), comparing it to a commercial supplement (CS) and a control diet (C). Water quality, growth performance, histology, nutritional composition, hematology, and key bioactive compounds (total carotenoids, astaxanthin, chitin, and chitosan) were assessed. Water quality remained stable across treatments. Growth performance and protein content were higher in DHP and CS groups, though DHP exhibited lower lipid levels. The DHP diet enhanced the shrimp's immune response, evidenced by the highest total hemocyte count (THC). Additionally, DHP yielded greater chitin, total carotenoids, and astaxanthin concentrations. Histological analyses revealed increased B-cell numbers in the hepatopancreas of shrimp from DHP and CS treatments. Thus, <i>H. pluvialis</i> bioencapsulated in <i>D. magna</i> supports growth comparable to a commercial supplement while enhancing immune markers and bioactive compound levels. These findings highlight its potential as an alternative protein source for sustainable shrimp nutrition. Further investigations into enzyme activity, gene expression related to protein and lipid digestion, and additional immune parameters would provide deeper insights into its effects on shrimp physiology.
DOI: 10.6084/m9.figshare.3568860.v1
title: Appendix J. Vertical distribution of light availability within crowns of two species.

description: Vertical distribution of light availability within crowns of two species.
DOI: 10.6084/m9.figshare.7654529.v1
title: Serum and peritoneal fluid levels of interleukin-6 and interleukin-37 as biomarkers for endometriosis

description: This study aimed to compare the levels of interleukin (IL)-1β, IL-6, IL-10, and IL-37 in the serum and peritoneal fluid of women with and without endometriosis. In addition, it aimed to determine the diagnostic values of the cytokines with significantly different concentrations. The levels of IL-1β, IL-6, IL-10, and IL-37 in the serum and peritoneal fluid samples of 40 women with endometriosis and 32 women without endometriosis were measured using an enzyme-linked immunosorbent assay. The serum and peritoneal fluid levels of IL-1β and IL-10 were not statistically significantly different between the endometriosis and control groups. The IL-6 and IL-37 levels in the serum and peritoneal fluid were higher in the endometriosis group than in the control group, and they were correlated with the stage of endometriosis. The AUC for the IL-37 was 0.897 for the serum and 0.934 for the peritoneal fluid, while the AUC for the IL-6 was 0.905 for the serum and 0.952 for the peritoneal fluid. Our results suggest that the serum and peritoneal fluid IL-6 and IL-37 levels were significantly increased in the endometriosis patients, indicating that these cytokines may serve as biomarkers for the diagnosis of endometriosis.
DOI: 10.17632/4b365yk8jj
title: Middle Eastern economies' population, GDP, fuel usage, and carbon dioxide emissions (1990-2020)

description: The dataset contains the following information from 12 Middle Eastern countries from 1990 to 2020 (namely Bahrain, Iran, Iraq, Jordan, Kuwait, Lebanon, Oman, Qatar, Saudi Arabia, Syria, the United Arab Emirates, and Yemen):
•	The population (according to the United Nations population statistics)
•	The GDPs of countries (constant 2010 US dollar) in the  studied period (collected from World Bank datasets)
•	Energy consumption in the Middle East by fuel (collected from the International Energy Agency (IEA) Energy Outlook  and British Petroleum (BP) statistical review)
•	The rate of carbon dioxide emissions in the Middle East by fuel (collected from the International Energy Agency (IEA) Energy Outlook  and British Petroleum (BP) statistical review)
DOI: 10.6084/m9.figshare.13603202.v1
title: Gesticulator: BVH files from the baselines comparisons study

description: BVH files of all the motions used in the comparisons of the proposed method with the baseline model for the ICMI 2020 paper: "Gesticulator: A framework for semantically-aware speech-driven gesture generation"
DOI: 10.6084/m9.figshare.14891976.v1
title: TieBreakJsons.zip

description: Tie-break FL
DOI: 10.6084/m9.figshare.22357996.v1
title: Crossland et al Hochstetter's frog site occupancy data.xls

description: The study involved conducting 10 metre transect surveys in streams in the Hunua Ranges, New Zealand between July to August 2006. In each survey, we searched for juvenile, subadult and adult Hochstetter's frogs. There are four data sheets in the file. Sheet 1 is frog detection data (presence/absence per survey). Sheet 2 is frog abundance data (total number of frogs observed per survey). Sheet 3 is detectability covariates; data for air temperature, number of refugia and rainfall are both raw data and standardised data ([x-mean] / standard deviation). Sheet 4 is occupancy covariate data for predator control history at sites.
DOI: 10.6084/m9.figshare.28246529.v7
title: COVID chatbot code

description: Design of a chatbot for the purpose of diagnostic evaluation and recommending immediate measures when patients are exposed to COV-19.
DOI: 10.6084/m9.figshare.29093447.v1
title: "GraphQL-Aware Healing in Service-Oriented Architectures via Multi-Signal Learning" : Dataset for submission for review to SOSE 2025

description: This archive includes all datasets associated with the SOSE 2025 paper:"GraphQL-Aware Healing in Service-Oriented Architectures via Multi-Signal Learning"Datasets included:1. GraphQL Error-Log Corpus (`.csv`, `.jsonl`) - Labeled logs for fine-tuning LLM classifiers2. Replay Buffer of Injected Failures (`.csv`) - 1,120 DQN training samples from 4 cloud-uncertainty profiles3. Resolver Telemetry Graph (`.graphml`, `.csv`) - Case-study resolver dependency structure with latency/error metricsAll datasets are anonymized, synthetic or derived from simulated test deployments, and provided for reproducibility and reviewer evaluation.<br>
DOI: 10.6084/m9.figshare.6108482.v1
title: DockerPedia: a knowledge graph for Docker images

description: DockerPedia is a resource that allows user inspect Docker images before downloading and deploy the within a host. Normally Docker images are like a black box in which users do not really know what they are deploying. User only know the name of the image and the name of the main package within the image. With this resource now it is possible to inspect the Docker images stored at DockerHub before deploying them.
DOI: 10.17632/k4nf7nfnvx
title: Virtual Reality Interview with Feedback Framework for Situational Practice of Gaze Among Autistic Adults

description: The high unemployment rates for autistic individuals are in part due to mismatches between their social patterns of attention and gaze, and society’s normative expectations during interviews. To help mitigate such disadvantages through a solo situational practice tool, we developed a virtual reality (VR) based job interview simulation and a gaze behavior coaching which is self-deliverable. We used the HTC Vive Pro Eye VR headset. Fourteen autistic individuals used the VR job interview simulation tool. Eleven went through the coaching step and participated in a second VR simulation session. Preliminary results were positive, in that participant behaviors generally approached non-autistic gaze trends. Participants perceived the tool to be useful and the provided feedback to be helpful in daily social interactions.

The dataset contains 14 folders, one for each participant. There are 2 to 4 .csv files in each folder, depending on whether a participant completed a single VR mock job interview session or two. The files named "VR-Data-X.csv" contain unfiltered gaze data from an interview session. Files named VR-Data-X-gaze_filtered.csv are different because they reflect the changes due to gaze filtering at columns “object gazed at”, “forehead gaze (0=No, 1=Yes)”, “eyes gaze (0=No, 1=Yes)”, “mouth gaze (0=No, 1=Yes)”, “total forehead gaze duration (s)”, “total forehead gaze %”, “total eye gaze duration (s)”, “total eye gaze %”, “total mouth gaze duration (s)”, and “total mouth gaze %”. The column titles explain what each column contains. The “gaze location (x)”, “gaze location (y)”, “gaze location (z)” columns are in meters and the numbers are a gaze dot’s distance from the origin of the 3D virtual space along the x, y, or z axis.
DOI: 10.6084/m9.figshare.11798466.v1
title: Supplementary Material for: Low Predialysis Plasma Calculated Osmolality Is Associated with Higher All-Cause Mortality: The Japanese Dialysis Outcomes and Practice Patterns Study (J-DOPPS)

description: <b><i>Introduction:</i></b> Patients undergoing hemodialysis (HD) have higher predialysis plasma osmolality. Several studies have suggested lower osmolality to be associated with worse outcomes in patients not undergoing HD. However, no studies have examined the association between osmolality and mortality among patients undergoing HD. <b><i>Objective:</i></b> We aimed to examine the association between predialysis plasma calculated osmolality and all-cause mortality. <b><i>Methods:</i></b> This was a prospective cohort study of 1,240 patients undergoing HD participating in the Japanese Dialysis Outcomes and Practice Patterns Study phase 5 (2012–2015). The exposure was predialysis plasma osmolality, calculated as 2 × (serum sodium concentration [mmol/L]) + (serum urea nitrogen [mg/dL])/2.8 + (serum glucose [mg/dL])/18. The primary outcome was all-cause mortality. The secondary outcome was the change in systolic blood pressure (SBP) during HD. We used a marginal structural model with stabilized weights to estimate the association between calculated osmolality and all-cause mortality in the presence of time-varying confounders affected by prior exposure. <b><i>Results:</i></b> Mean baseline plasma calculated osmolality was 306.8 ± 8.6 mOsm/kg. Low predialysis calculated osmolality was associated with higher mortality (adjusted hazard ratio 1.52, 95% confidence interval [CI]: 1.30–1.78 by each 10 mOsm/L lower osmolality). The association was consistent across clinically relevant subgroups. Predialysis osmolality was significantly associated with intradialytic SBP change (mean difference 0.96 [95% CI: 0.05–1.88] mm Hg per each 10 mOsm/L lower osmolality). <b><i>Conclusions:</i></b> Low predialysis calculated osmolality was an independent risk factor of all-cause mortality.
DOI: 10.6084/m9.figshare.12401507.v3
title: Carbon, nitrogen and sulfur isotopic values of human hair from Mexico

description: Carbon, nitrogen and sulfur isotopic values of human hair from Mexico
DOI: 10.6084/m9.figshare.8127752.v1
title: STRUCTURAL CARTOGRAPHY FOR LITERATURE REVIEW: REVEALING THE UNDERLYING STRUCTURE OF A LITERATURE THROUGH A BIBLIOGRAPHIC ATLAS

description: ABSTRACT This paper presents the results of a methodological study that established a specific method for historical and bibliographic analysis known as structural cartography for literature review. Structural cartography is a rigorous and interdisciplinary method that reveals the structure of a literature knowledge domain through the methodological notions found in historical research, bibliographic investigation, citation network analysis and cartography. This paper intends to provide readers with a broad understanding of the method of structural cartography for literature review and how to apply it. Finally, this article presents twelve ways of approaching a literature structure by using the bibliographic atlas elaborated by means of structural cartography for literature review.
DOI: 10.17632/yhtnjnf2jf
title: A midbrain circuit that mediates headache aversiveness

description: These data demonstrate a direct connection between the ventrolateral periaqueductal gray (vlPAG) and the ventral tegmental area (VTA) that contributes to headache aversiveness. Many VTA neurons receive monosynaptic input from the vlPAG, and cranial nociceptive input increases Fos expression in VTA-projecting vlPAG neurons. Activation of PAG inputs to the VTA induces avoidance behavior, while inactivation of these projections induces a place preference only in animals with headache. This work identifies a distinct pathway that mediates cranial nociceptive aversiveness. Source data for electrophysiology and Fos counting in the vlPAG are provided here. A summary of behavioral data is also provided.
DOI: 10.6084/m9.figshare.7934282.v1
title: gVCF_HG02623

description: 1000 Genomes gVCF mapped to hs37d5 for HG02623. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.17632/k2xg2s7cg6
title: Data for "Neighbourhood dissimilarity consistently attenuates competition stress on tree growth under altered water availability in a natural boreal forest"

description: StandType: three stand types: broadleaf, conifer and their mixtures.
Site: Site No.
Water: water treatments: water addition (A), reduction (R) and ambient control (C).
Spe: species names of tree individuals.
x: x-coordinates of tree individuals
y: y-coordinates of tree individuals.
BAI_1720: Basal area increment between the two measurements in 2017 and 2020.
Hegyi: Neighbourhood Hegyi index.
DroughtD: Neighbourhood drought tolerance dissimilarity.
PhyloD: Neighbourhood phylogenetic dissimilarity.
DOI: 10.17632/tk4f76sxn4
title: Viral metagenomics reveals distinct composition of plasma virome with increased abundance of Human gammaherpesvirus 4 in HIV-infected subjects on suppressive antiretroviral therapy compared to healthy controls

description: Plasma virome-based study aimed at identifying viral sequences in HIV-infected adults on therapy and uninfected healthy controls. The dataset consists of 6 healthy controls and 6 HIV- infected adults. A, B, C, D, E and F  are healthy controls whereas G, H, I, J, K and L are HIV-infected adults.
DOI: 10.6084/m9.figshare.11508309.v2
title: Global and Simultaneous Hypothesis Testing for High-Dimensional Logistic Regression Models

description: High-dimensional logistic regression is widely used in analyzing data with binary outcomes. In this article, global testing and large-scale multiple testing for the regression coefficients are considered in both single- and two-regression settings. A test statistic for testing the global null hypothesis is constructed using a generalized low-dimensional projection for bias correction and its asymptotic null distribution is derived. A lower bound for the global testing is established, which shows that the proposed test is asymptotically minimax optimal over some sparsity range. For testing the individual coefficients simultaneously, multiple testing procedures are proposed and shown to control the false discovery rate and falsely discovered variables asymptotically. Simulation studies are carried out to examine the numerical performance of the proposed tests and their superiority over existing methods. The testing procedures are also illustrated by analyzing a dataset of a metabolomics study that investigates the association between fecal metabolites and pediatric Crohn’s disease and the effects of treatment on such associations. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.12367265.v1
title: Yeast 4 strains chemical genomics - raw colony sizes

description: Raw colony sizes used to compute the chemical genomics data of gene knock-outs (KO) across 4 yeast genetic backgrounds (i.e. Saccharomyces cerevisiae strains). This data represents the colony size in pixels after surface correction (columns "surface-corrected") and colony border normalization ("normalized"). Further details can be found in the "Chemical genomic data analysis" section in the referenced paper (doi: 10.15252/msb.20198831) and can be reproduced using the data and script provided in the repository associated with the paper (https://github.com/mgalardini/2018koyeast, in particular this script: https://github.com/mgalardini/2018koyeast/blob/master/src/correct_raw_sizes.py).<br>
DOI: 10.17632/h5zgzrfkxr
title: MOT individual differences

description: All data and scripts for Upadhyayula & Flombaum (in press) "A Model that Adopts Eye Fixations Explains Individual Differences in Multiple Object Tracking". Cognition. The entire data can be found in the link shared below
DOI: 10.6084/m9.figshare.21778871.v1
title: Lagos State Health Facility Assessment Tool

description: Health Systems Consult Limited (HSCL) conducted a health facility assessment as part of its technical assistance to Lagos State Health Management Agency (LASHMA). The data collected during the health facility assessment will provide the necessary information for the effective implementation of the Lagos State Health Scheme (LSHS). The specific objectives for the health facility assessment were to determine the distribution pattern of the different types of health facilities in Lagos State, the current level of service availability and general service readiness in health facilities, the level of service-specific readiness of health care facilities in Lagos State, and to provide high-priority services on the LSHS. The data was collected across the following thematic areas: human resources, basic infrastructure, basic medical equipment and infection prevention, health services in health facilities, medical supplies and commodities, health insurance coverage, financial management system, and clinical governance.
DOI: 10.6084/m9.figshare.14601312.v1
title: Math rating (selection method)

description: Rating of mathematicians, obtained by selecting coefficients based on expert estimates.
DOI: 10.6084/m9.figshare.29078699.v1
title: Raw data for locus: Dero_C11F_C11R

description: Raw data for calls locus: Dero_C11F_C11R (see Piaggio et al. 2008)
DOI: 10.17632/vpps4vhryg
title: COVID-19 related trajectory data of 10 microseconds all atom molecular dynamics simulation of SARS-CoV-2 dimeric main protease

description: Raw trajectory data (GROMACS format) of 10 microseconds all atom molecular dynamics simulation of COVID-19 related SARS-CoV-2 dimeric main protease without ligand based on PDB 6LU7, were caclulated on a special purpose computer, MDGRAPE-4A, at RIKEN BDR, JAPAN. We can observe relaxation dynamics and fluctuations of the dimeric protease over the microseconds timescale. We hope that this raw data can help drug development efforts targeting the SARS-CoV-2 main protease. Preparation details and summaries will be submitted to "Data in Brief". More data might be added as new version or another dataset.
DOI: 10.17632/6gtprw7h8m
title: Dataset on Implementation of Lean Six Sigma in selected Nigerian manufacturing countries

description: This dataset contains information about the usage of Lean Six Sigma (LSS) tools in randomly selected Nigerian manufacturing companies.
DOI: 10.6084/m9.figshare.1027357.v2
title: A new durophagous phocid (Mammalia: Carnivora) from the late Neogene of Peru and considerations on monachine seals phylogeny

description: Here we describe a new phocid, <i>Hadrokirus martini</i> gen. et sp. nov., from the Pisco Formation, in the locality of Sud-Sacaco (Late Miocene to Early Pliocene of Peru). This taxon is the third true seal described from this locality. It is characterized by strong dentition paired with a powerful masticatory musculature and a peculiar atlas. No precise diet is inferred here, but a propensity for durophagy and predation on large prey (such as the extant leopard seal, <i>Hydrurga leptonyx</i>) can be considered. A cladistic analysis including characters from the literature as well as original ones places <i>Hadrokirus</i> among lobodontines in a clade with <i>Piscophoca pacifica</i>, another phocid from the Pisco Formation. In addition, this analysis supports the monophyly of both Phocinae and Monachinae and recognizes a clade consisting of the four extant species of lobodontines, with <i>Acrophoca longirostris</i> (the third phocid from the Pisco Formation) as sister-group of this clade. All clades are supported by unambiguous non-homoplastic synapomorphies. Following the optimization, our analysis recognizes aquatic innovations as phocine reversions at the scale of Carnivora, or as convergences of monachines with non-phocid pinnipeds.http://zoobank.org/urn:lsid:zoobank.org:pub:A9884A4D-99C2-4CB0-BEE9-E2D2830481DD
DOI: 10.6084/m9.figshare.12220805.v2
title: DKhate: Danish Hate Speech & Abusive Language data

description: A corpus of Offensive Language and Hate Speech Detection for Danish<br><br>This DKhate dataset contains 3600 comments from the web annotated for offensive language, following the Zampieri et al. / OLID scheme. <br><br>Submissions and benchmarks for the OffensEval 2020 Danish track are also included.