cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17037/data.00002414
title: Risk factor codelist - Ethnicity

description: A set of code lists used to identify ethnicity records in Aurum and GOLD.
DOI: 10.17037/data.00002412
title: Risk factor codelist - Smoking

description: Read codes to identify smoking records in GOLD.
DOI: 10.6084/m9.figshare.15067299
title: Mean RTs for each patient and condition

description: Mean response times in picture naming for each individual patient and each experimental condition. Used to calculate raw priming effects.
DOI: 10.6084/m9.figshare.15067299.v1
title: Mean RTs for each patient and condition

description: Mean response times in picture naming for each individual patient and each experimental condition. Used to calculate raw priming effects.
DOI: 10.25345/c5425b
title: MassIVE MSV000087897 - O-linked Glycosylation of the SARS-CoV-2 Spike is Suppressed by Quaternary Structural Restraints
title: Understanding the glycosylation of envelope spike (S) protein of SARS-CoV-2 is important in defining the antigenic surface of this key viral target. However, the underlying protein architecture may significantly influence glycan occupancy and processing. There is, therefore, potential for different recombinant fragments of S protein to display divergent glycosylation. Here, we show that the receptor binding domain (RBD), when expressed as a monomer, exhibits O-linked glycosylation which is not recapitulated in the native-like soluble trimeric protein. We unambiguously assign O-linked glycosylation by homogenizing N-linked glycosylation using the enzymatic inhibitor, kifunensine, and then analyzing the resulting structures by electron transfer higher-energy collision dissociation (EThcD) in an Orbitrap Eclipse Tribrid instrument. In the native-like trimer, we observe a single unambiguous O-linked glycan at T323 which displays very low occupancy. In contrast, several sites of O-linked glycosylation can be identified when RBD is expressed as a monomer, with T323 being almost completely occupied. We ascribe this effect to the relaxation of steric restraints arising from quaternary protein architecture. Our analytical approach has also highlighted that fragmentation ions arising from trace levels of truncated N-linked glycans can be misassigned as proximal putative O-linked structures, particularly where a paucity of diagnostic fragments were obtained. Overall, we and show that in matched expression systems quaternary protein architecture limits O-linked glycosylation of the spike protein.
DOI: 10.17037/data.00002411
title: Risk factor codelist - smoking

description: Medcodeid to identify smoking records in Aurum.
DOI: 10.17037/data.00002409
title: Clinical codelist - Cancer

description: A set of codes used to identify cancer in GOLD and HES.
DOI: 10.17037/data.00002410
title: Clinical codelists - Immunosuppression

description: A set of code lists used to identify patients who received an organ transplant or HIV diagnosis in Aurum, GOLD, and HES.
DOI: 10.17037/data.00002406
title: Clinical codelist - chronic kidney disease

description: A set of code lists to identify chronic kidney disease in Aurum, GOLD, and HES.
DOI: 10.17037/data.00002407
title: Clinical codelist - Diabetes

description: A set of code lists used to identify diabetes in Aurum, GOLD, and HES.
DOI: 10.17037/data.00002408
title: Clinical codelist - Cancer

description: Medcodeid to identify cancer in Aurum.
DOI: 10.17037/data.00002405
title: Clinical codelist - chronic liver disease

description: A set of codes to identify chronic liver disease in GOLD and HES.
DOI: 10.17037/data.00002404
title: Clinical codelist - chronic liver disease

description: Medcodeid to identify chronic liver disease in Aurum
DOI: 10.17037/data.00002403
title: Clinical codelist - chronic neurological conditions other than dementia

description: A set of code lists used to identify chronic neurological conditions (other than dementia) in Aurum, GOLD, and HES.
DOI: 10.17037/data.00002400
title: Clinical codelist - Psoriasis

description: Codes to identify psoriasis in Aurum and GOLD.
DOI: 10.17037/data.00002401
title: Clinical codelist - learning disabilities

description: A set of code lists used to identify learning disabilities in Aurum, GOLD, and HES.
DOI: 10.17037/data.00002402
title: Clinical codelist - Dementia

description: A set of code lists used to identify dementia in Aurum, GOLD, and HES.
DOI: 10.5517/ccdc.csd.cc27ns0q
title: CCDC 2075543: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.5517/ccdc.csd.cc27ns1r
title: CCDC 2075544: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.5517/ccdc.csd.cc27ns2s
title: CCDC 2075545: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.5517/ccdc.csd.cc27ns3t
title: CCDC 2075546: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.5517/ccdc.csd.cc27ns4v
title: CCDC 2075547: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.5517/ccdc.csd.cc27ns5w
title: CCDC 2075548: Experimental Crystal Structure Determination

description: Related Article: Alessandro Bismuto, Patrick Müller, Patrick Finkelstein, Nils Trapp, Gunnar Jeschke, Bill Morandi|2021|J.Am.Chem.Soc.|143|10642|doi:10.1021/jacs.1c03763
DOI: 10.17037/data.00002394
title: Clinical codelist - Cerebrovascular disease

description: Clinical codelists for Cerebrovascular disease
DOI: 10.5517/ccdc.csd.cc27tlpc
title: CCDC 2080183: Experimental Crystal Structure Determination

description: Related Article: Daniel Blasco, José M. López-de-Luzuriaga, Miguel Monge, M. Elena Olmos, María Rodríguez-Castillo, Hippolyte Amaveda, Mario Mora, Victoria García Sakai, José A. Martínez-González|2021|Inorg.Chem.Front.|8|3707|doi:10.1039/D1QI00586C
DOI: 10.5517/ccdc.csd.cc27tlqd
title: CCDC 2080184: Experimental Crystal Structure Determination

description: Related Article: Daniel Blasco, José M. López-de-Luzuriaga, Miguel Monge, M. Elena Olmos, María Rodríguez-Castillo, Hippolyte Amaveda, Mario Mora, Victoria García Sakai, José A. Martínez-González|2021|Inorg.Chem.Front.|8|3707|doi:10.1039/D1QI00586C
DOI: 10.5517/ccdc.csd.cc27tx00
title: CCDC 2080472: Experimental Crystal Structure Determination

description: Related Article: Biao Chen, Wenhuan Huang, Xiancheng Nie, Fan Liao, Hui Miao, Xuepeng Zhang, Guoqing Zhang|2021|Angew.Chem.,Int.Ed.|60|16970|doi:10.1002/anie.202106204
DOI: 10.5517/ccdc.csd.cc27tx11
title: CCDC 2080473: Experimental Crystal Structure Determination

description: Related Article: Biao Chen, Wenhuan Huang, Xiancheng Nie, Fan Liao, Hui Miao, Xuepeng Zhang, Guoqing Zhang|2021|Angew.Chem.,Int.Ed.|60|16970|doi:10.1002/anie.202106204
DOI: 10.17037/data.00002396
title: Clinical codelist - Hypertension

description: Clinical codelist for Hypertension.
DOI: 10.17037/data.00002395
title: Clinical codelist - Venous thromboembolism

description: Clinical codelist for venous thromboembolism
DOI: 10.17037/data.00002397
title: Clinical codelist - Asthma

description: Med codes to identify asthma in Aurum, read codes to identify asthma in GOLD, and ICD-10 codes for asthma.
DOI: 10.17037/data.00002399
title: Clinical codelist - Rheumatoid Arthritis

description: Codes to identify rheumatoid arthritis in Aurum and GOLD.
DOI: 10.17037/data.00002398
title: Clinical codelist - Chronic respiratory disease other than asthma

description: ICD-10, Medcodes, and Read codes for chronic respiratory disease (other than asthma).
DOI: 10.6073/pasta/cf2963a43495d56df0f81154e8f34152
title: DroughtNet: Establishing the International Drought Experiment at Cedar Creek sIDE (savanna IDE) : Aboveground Biomass

description: Abstract: Droughts are forecast to become increasingly frequent and intense in many regions worldwide, likely impacting community structure, ecosystem functioning, and ecosystem services. The International Drought Experiment (IDE) is a coordinated, multi-site drought experiment requiring only a moderate investment of time and resources by investigators. This coordinated, distributed experiment will quantify the impacts of extreme drought across a wide range of terrestrial ecosystems based on a common experimental design and a comparable suite of measurements. We aim to establish two stand-alone experiments following the IDE design at Cedar Creek. Precipitation reduction shelters will be established during spring 2017 to simulate a 1 in 100 year dry event, which at our site corresponds to removing 43% of annual precipitation. The sIDE (savanna IDE) study will be established in Field D, an oak savanna, and will consist of 3 precipitation treatments (precipitation reduction shelter, inverted shelter as an infrastructure control, no shelter), fully crossed with two fertilization treatments (unamended control or NutNet NPK treatment), and with 5 replicate plots for each of the six treatment combinations, for a total of 30 plots, each 3 by 3 m (2 by 2 m inner area sampled), covered by 3 by 3 m shelters. The three precipitation treatments described above will be applied at the subplot level and fully crossed with the two current irrigation treatments (ambient or ambient plus ~2 cm per week of irrigation) and with two of the current fertilization treatments (unamended or 14 g N m-2), with six true replicate plots for each of the 12 treatment combinations, for a total of 72 subplots. Standard measurements across these two experiments and all other DroughtNet sites will include peak aboveground biomass clipping, soil carbon and nitrogen content, plant community composition from % cover, plant traits, and meteorological measurements (daily precipitation, air temperature). Many sites will also measure light availability, root biomass, soil moisture, and decomposition rates of tea bags and tongue depressors. Pre-treatment data will be collected during 2016. The experiment is expected to have minimal impacts on Cedar Creek and on other projects
DOI: 10.24378/exe.3423
title: Healthy Parent Carers: feasibility randomised controlled trial of a peer-led group-based health promotion intervention for parent carers of disabled children (dataset)

description: This is the dataset used for the Bjornstad et al. (2021) article "Healthy Parent Carers: feasibility randomised controlled trial of a peer-led group-based health promotion intervention for parent carers of disabled children" published in Pilot and Feasibility Studies.
description: Five csv files include four datasets and a codebook providing details of the main HPC_dataset_archive file. The Attendance data_archive file contains data related to attendance for those allocated to the group intervention (1=attended whole session, 2=partial attendance, 3=did not attend). The IMD_dataset_archive file contains the Index of Multiple Deprivation Deciles and scores for each participant (postcodes have been removed to protect anonymity). The PAM_data_archive file contains the dataset of scores for each participant at all three time points on the Patient Activation Measure.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/126511
DOI: 10.5281/zenodo.5142207
title: MAGs from Lindstrom et al

description: Fasta files and information file for 243 microbial metagenome assembled genomes (MAGs) from publication to be submitted titled "<strong>Crop genotypic variation in root exudate composition influences soil microbiome membership and functional potential". </strong>
DOI: 10.5281/zenodo.5142206
title: MAGs from Lindstrom et al

description: Fasta files and information file for 243 microbial metagenome assembled genomes (MAGs) from publication to be submitted titled "<strong>Crop genotypic variation in root exudate composition influences soil microbiome membership and functional potential". </strong>
DOI: 10.34740/kaggle/dsv/2473404
title: World cities database
DOI: 10.6084/m9.figshare.14811363
title: Data for "Literary runaway: Increasingly more references cited per academic research article from 1980 to 2019"

description: Data are either retrieved from JCR incites or manually collected from Journal articles.
DOI: 10.6084/m9.figshare.12630773.v5
title: Zootaxa articles cited as TSV file

description: The TSV file has a header row mostly of CSL terms (e.g., "title", "container-title", "DOI"). The first column ("guid") is the DOI of the Zootaxa article that cites that work, "guid-date" is the date of publication of the Zootaxa article. The final column "unstructured" is the original citation string. Each data row is a single work that is cited, the "guid" field groups together works cited by the same <i>Zootaxa</i> article.<br>
DOI: 10.6084/m9.figshare.15067341
title: Above and belowground biomass

description: The above ground biomass collected from each of 30 sites (3 quadrats each) which contains living, standing dead, and litter biomass. Below ground biomass was collected from the same sites (7 in-growth cores) after cores were removed at the beginning of the season, replaced with vermiculite, then re-collected at the end of the growing season to measure the amount of root biomass produced at each site. <br>
DOI: 10.6084/m9.figshare.15067374
title: Decomposition data

description: Weights from reciprocal transfer litterbag experiment<br>
DOI: 10.6084/m9.figshare.15067383.v1
title: Site Characteristics

description: Environmental variables and vegetation community composition of each site<br>
DOI: 10.6084/m9.figshare.15067383
title: Site Characteristics

description: Environmental variables and vegetation community composition of each site<br>
DOI: 10.6073/pasta/0913655c31c5621f45ff43665aec090d
title: DroughtNet: Establishing the International Drought Experiment at Cedar Creek sIDE (savanna IDE) : Percent Cover

description: Abstract: Droughts are forecast to become increasingly frequent and intense in many regions worldwide, likely impacting community structure, ecosystem functioning, and ecosystem services. The International Drought Experiment (IDE) is a coordinated, multi-site drought experiment requiring only a moderate investment of time and resources by investigators. This coordinated, distributed experiment will quantify the impacts of extreme drought across a wide range of terrestrial ecosystems based on a common experimental design and a comparable suite of measurements. We aim to establish two stand-alone experiments following the IDE design at Cedar Creek. Precipitation reduction shelters will be established during spring 2017 to simulate a 1 in 100 year dry event, which at our site corresponds to removing 43% of annual precipitation. The sIDE (savanna IDE) study will be established in Field D, an oak savanna, and will consist of 3 precipitation treatments (precipitation reduction shelter, inverted shelter as an infrastructure control, no shelter), fully crossed with two fertilization treatments (unamended control or NutNet NPK treatment), and with 5 replicate plots for each of the six treatment combinations, for a total of 30 plots, each 3 by 3 m (2 by 2 m inner area sampled), covered by 3 by 3 m shelters. The three precipitation treatments described above will be applied at the subplot level and fully crossed with the two current irrigation treatments (ambient or ambient plus ~2 cm per week of irrigation) and with two of the current fertilization treatments (unamended or 14 g N m-2), with six true replicate plots for each of the 12 treatment combinations, for a total of 72 subplots. Standard measurements across these two experiments and all other DroughtNet sites will include peak aboveground biomass clipping, soil carbon and nitrogen content, plant community composition from % cover, plant traits, and meteorological measurements (daily precipitation, air temperature). Many sites will also measure light availability, root biomass, soil moisture, and decomposition rates of tea bags and tongue depressors. Pre-treatment data will be collected during 2016. The experiment is expected to have minimal impacts on Cedar Creek and on other projects
DOI: 10.6084/m9.figshare.15067386
title: Grammar Dataset 2021.sav

description: Dataset containing responses of an experiment involving 2 different treatments of a marketing email across 4 branded offerings
DOI: 10.6084/m9.figshare.15067386.v1
title: Grammar Dataset 2021.sav

description: Dataset containing responses of an experiment involving 2 different treatments of a marketing email across 4 branded offerings
DOI: 10.6073/pasta/3726cdde98c151652ac43d35c5b99f89
title: PIE LTER stream chemistry characteristics studied for methane ebullition at four headwater streams in Massachusetts and New Hampshire.

description: Sediment, stream, and canopy characteristics were measured in four headwater streams in Massachusetts and New Hampshire associated with methane ebullition monitoring. Canopy cover, water depth, sediment organic matter content, the percent sediment less than 2mm in diameter, sediment depth, sediment percent carbon, and sediment percent nitrogen were measured. Other files to reference: WAT-Stream-Ebullition
DOI: 10.6084/m9.figshare.13521444.v1
title: Mapping consistent additive and epistatic QTLs for plant production traits under drought in target populations of environment using locally adapted landrace in rice (<i>Oryza sativa</i> L.)

description: A total of 36 colocated QTLs associated with plant production traits were mapped using IR62266/Norungan recombinant inbred lines under drought and non-stress conditions in target populations of environment. Multi-model composite interval mapping and multi-environment analysis detected seven consistent QTLs for plant production traits on chromosomes 1, 2, 3, 6, 10 and 11. QTLs for plant height, number of tillers, biomass, spikelet fertility and grain yield under drought identified on chr. 1 (RM5389-RM11943-RM5794), chr. 2 (RM324-RM5390 and RM12460-RM423-RM5345), chr. 3 (RM6329-RM5475-RM16030), chr. 6 (RM508-RM585-RM217), chr. 10 (RM7361-RM8207) and chr. 11 (RM209-RM6499) in this study have been reported as meta-QTLs for yield under drought. Consistent positive allelic contribution from the landrace, Norungan was shown at the two QTLs on chr. 2, while IR62266 showed consistent positive allelic effect at the QTL on chr. 10. At other four regions the effect was confounded with the stress condition, for instance the region on chr. 3 identified for straw yield showed additive effect from Norungan in all stress trials, while in the non-stress trials the positive allele came from IR62266. Epistasis for grain yield was detected in the regions of non-additive effects and its relative contribution was small. Relatively small percentage of grain yield variation was explained by additive x environment interaction (0.28 - 1.77%), but was larger than that explained by additive effect QTL across environments (0.05 - 0.35%). These consistent QTLs may have genes evolutionarily conserved in response to drought and could be ideal candidates for rice yield improvement in water-limited environments.
DOI: 10.6084/m9.figshare.13206343
title: The influence of high night temperature on yield and physiological attributes of Soybean cv. Fukuyutaka

description: To evaluate soybean performance in response to high night temperature (HNT), a soybean cultivar, Fukuyutaka, was grown in 2 years under different night temperatures on a mini field in a temperature gradient chamber (TGC) at Kyoto, Japan. The average night temperature ranged from 21.7°C to 23.9°C and from 20.3°C to 22.8°C in 2017 and 2018, respectively. An additional experiment was conducted using a phytotron observing the same cv. under NT as high as 28°C (extreme HNT) and the control at 22 C from a R1 to R6.5 period. In the TGC yield tended to decline by 4.6% per °C when the results from the 2 years were combined. The responses of yield components tended to offset and the harvest index did not respond to varying NT. And thus the decrease in yield by HNT resulted from the change in biomass. The reduction of biomass was attributable more to branch growth than to main stem and more to leaf growth thant to other organs. Leaf area and leaf weight showed responses to NT as convex curves, suggesting that HNT may inhibit leaf growth. Reduction of biomass was more evident by extreme HNT in the phytotron. P<sub>n</sub> was not significantly affected by HNT in TGC. The estimated maintenance respiration (R<sub>m</sub>) increased with HNT but it seemed to explain the biomass response to HNT only partially. The results suggested that the growth and yield of soybean are potentially affected by increased NT through a negative impact on biomass production caused by multiple factors.
DOI: 10.6084/m9.figshare.13521444
title: Mapping consistent additive and epistatic QTLs for plant production traits under drought in target populations of environment using locally adapted landrace in rice (<i>Oryza sativa</i> L.)

description: A total of 36 colocated QTLs associated with plant production traits were mapped using IR62266/Norungan recombinant inbred lines under drought and non-stress conditions in target populations of environment. Multi-model composite interval mapping and multi-environment analysis detected seven consistent QTLs for plant production traits on chromosomes 1, 2, 3, 6, 10 and 11. QTLs for plant height, number of tillers, biomass, spikelet fertility and grain yield under drought identified on chr. 1 (RM5389-RM11943-RM5794), chr. 2 (RM324-RM5390 and RM12460-RM423-RM5345), chr. 3 (RM6329-RM5475-RM16030), chr. 6 (RM508-RM585-RM217), chr. 10 (RM7361-RM8207) and chr. 11 (RM209-RM6499) in this study have been reported as meta-QTLs for yield under drought. Consistent positive allelic contribution from the landrace, Norungan was shown at the two QTLs on chr. 2, while IR62266 showed consistent positive allelic effect at the QTL on chr. 10. At other four regions the effect was confounded with the stress condition, for instance the region on chr. 3 identified for straw yield showed additive effect from Norungan in all stress trials, while in the non-stress trials the positive allele came from IR62266. Epistasis for grain yield was detected in the regions of non-additive effects and its relative contribution was small. Relatively small percentage of grain yield variation was explained by additive x environment interaction (0.28 - 1.77%), but was larger than that explained by additive effect QTL across environments (0.05 - 0.35%). These consistent QTLs may have genes evolutionarily conserved in response to drought and could be ideal candidates for rice yield improvement in water-limited environments.
DOI: 10.6084/m9.figshare.14740298
title: Interatomic potential for metal diborides

description: Parameters of the embedded atom method inter-atomic potential for metal diborides MB<sub>2</sub> (M = Al, Mg, Mo, Hf, Nb, Sc, Ti, Y, Zr, V) are presented in this paper. The potential parameters were determined empirically by fitting to a first-principles and experimental data of the equilibrium lattice constant, cohesion energy and bulk modulus of metal diborides. The potential provides a good representation of the desired properties of considered metal diborides. To test the applicability of the proposed potential to molecular dynamics simulation of metal diborides, the specific heat capacities of TiB<sub>2</sub> and ZrB<sub>2</sub> were determined. The proposed potential is intended for use in molecular dynamics simulations of metal diboride nanostructures.