cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25378/janelia.24247318.v1
title: Manual organelle segmentations (crop175) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver (jrc_mus-liver)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><br><br>- <b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<br><br>- <b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<br><br><b>Annotation description</b>: Dense segmentations of extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop175<br><br><b>Primary Annotator</b>: Woohyun Park<br><br><b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<br><br><b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<br><br><b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<br><br><b>Annotated data dimensions (µm)</b>: 2.4 x 1.2 x 3.2 (x, y, z)<br><br><b>Annotated data offset (nm)</b>: 36958 x 58022 x 16342 (x, y, z)<br><br><b>Classes annotated</b>: extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<br><br><b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver/jrc_mus-liver.zarr/recon-1/labels/groundtruth/crop175<br><br><b>Source (EM) dataset ID</b>: jrc_mus-liver<br><br><b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<br><br><b>Source (EM) data dimensions (µm)</b>: 101.98 x 101.82 x 71.46 (x, y, z)<br><br><b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913047<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver<br><br><b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<br><br><b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<br><br><b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.6084/m9.figshare.c.3623624_d3.v1
title: Additional file 3: of Effect of herd size on subclinical infection of swine in Vietnam with influenza A viruses

description: Pearson correlation matrix for the variables investigated. Pearsonâ  s correlation coefficient was used to identify independent variables collected in this study. (XLS 45Â kb)
DOI: 10.6084/m9.figshare.c.3623621_d4.v1
title: Additional file 8: of A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveilsÂ novel thermoalkaliphilic enzymes

description: Summary of activities associated with CAZy enzyme families described in this study. (XLS 40 kb)
DOI: 10.6084/m9.figshare.c.3623567_d9.v1
title: Additional file 6: Table S2. of Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment

description: Gene level statistics. The lists of differentially expressed genes for each of the nine comparisons were collated into a single file, which was used for further analysis. (TXT 722Â kb)
DOI: 10.6084/m9.figshare.c.3623630_d2.v1
title: Additional file 2: of Prognostic value of morphologic and morphometric analyses in IgA nephropathy biopsies

description: Database 2. (XLS 9Â kb)
DOI: 10.6084/m9.figshare.c.3623612_d5.v1
title: Additional file 3: of 
                     P16-specific DNA methylation by engineered zinc finger methyltransferase inactivates gene transcription and promotes cancer metastasis

description: File S2 (annotated_tss_P16Dnmt-IgG.fq_macs_peaks). (XLSX 139 kb)
DOI: 10.6084/m9.figshare.c.3623621_d5.v1
title: Additional file 7: of A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveilsÂ novel thermoalkaliphilic enzymes

description: Complete gene annotation of fosmid insert T17-2. (XLS 36 kb)
DOI: 10.6084/m9.figshare.c.3623612_d6.v1
title: Additional file 4: of 
                     P16-specific DNA methylation by engineered zinc finger methyltransferase inactivates gene transcription and promotes cancer metastasis

description: File S3 (annotated_tss_vector-Myc.fq_macs_peaks). (XLSX 153 kb)
DOI: 10.6084/m9.figshare.c.3623621_d6.v1
title: Additional file 5: of A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveilsÂ novel thermoalkaliphilic enzymes

description: Complete gene annotation of fosmid insert 10BT. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3623630_d4.v1
title: Additional file 1: of Prognostic value of morphologic and morphometric analyses in IgA nephropathy biopsies

description: Database 1. (XLS 37Â kb)
DOI: 10.6084/m9.figshare.c.3623621_d7.v1
title: Additional file 3: of A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveilsÂ novel thermoalkaliphilic enzymes

description: Complete gene annotation of fosmid insert NT18-17. (XLS 43 kb)
DOI: 10.6084/m9.figshare.c.3623639_d1.v1
title: Additional file 2 of Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries

description: Concordant results using different annotation sources and single or multiple APA analyses Spreadsheet reporting the genes reported as shortened or lengthened with roar using either the APASdb or PolyA_DB annotation with the single or multiple APA analyses and overlaps between the lists. (ZIP 7 kb)
DOI: 10.6084/m9.figshare.c.3623621_d8.v1
title: Additional file 1: of A multi-substrate approach for functional metagenomics-based screening for (hemi)cellulases in two wheat straw-degrading microbial consortia unveilsÂ novel thermoalkaliphilic enzymes

description: Complete gene annotation of fosmid insert NT2-2. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3623639_d2.v1
title: Additional file 3 of Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries

description: Multiple APA analyses results with PolyA_DB: comparisons with other approaches. (XLS 8 kb)
DOI: 10.25378/janelia.24247300
title: Manual organelle segmentations (crop172) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver (jrc_mus-liver)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><br><br>- <b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<br><br>- <b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<br><br><b>Annotation description</b>: Dense segmentations of extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop172<br><br><b>Primary Annotator</b>: Woohyun Park<br><br><b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<br><br><b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<br><br><b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<br><br><b>Annotated data dimensions (µm)</b>: 1.6 x 2 x 2 (x, y, z)<br><br><b>Annotated data offset (nm)</b>: 33254 x 57430 x 16310 (x, y, z)<br><br><b>Classes annotated</b>: extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<br><br><b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver/jrc_mus-liver.zarr/recon-1/labels/groundtruth/crop172<br><br><b>Source (EM) dataset ID</b>: jrc_mus-liver<br><br><b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<br><br><b>Source (EM) data dimensions (µm)</b>: 101.98 x 101.82 x 71.46 (x, y, z)<br><br><b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913047<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver<br><br><b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<br><br><b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<br><br><b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24247300.v1
title: Manual organelle segmentations (crop172) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver (jrc_mus-liver)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><br><br>- <b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<br><br>- <b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<br><br><b>Annotation description</b>: Dense segmentations of extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<br><br><b>Annotation ID</b>: crop172<br><br><b>Primary Annotator</b>: Woohyun Park<br><br><b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<br><br><b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<br><br><b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<br><br><b>Annotated data dimensions (µm)</b>: 1.6 x 2 x 2 (x, y, z)<br><br><b>Annotated data offset (nm)</b>: 33254 x 57430 x 16310 (x, y, z)<br><br><b>Classes annotated</b>: extracellular space, plasma membrane, vesicle membrane, endosome membrane, vesicle lumen, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lysosome lumen, lysosome membrane, endosome lumen, cytosol, lysosome, endosome, vesicle, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<br><br><b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver/jrc_mus-liver.zarr/recon-1/labels/groundtruth/crop172<br><br><b>Source (EM) dataset ID</b>: jrc_mus-liver<br><br><b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<br><br><b>Source (EM) data dimensions (µm)</b>: 101.98 x 101.82 x 71.46 (x, y, z)<br><br><b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.16913047<br><br><b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver<br><br><b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<br><br><b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<br><br><b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.6084/m9.figshare.c.3623648_d1.v1
title: Additional file 1: of Rationale and design of the German-Speaking Myeloma Multicenter Group (GMMG) trial ReLApsE: a randomized, open, multicenter phase III trial of lenalidomide/dexamethasone versus lenalidomide/dexamethasone plus subsequent autologous stem cell transplantation and lenalidomide maintenance in patients with relapsed multiple myeloma

description: SPIRIT schedule. (XLS 923Â kb)
DOI: 10.15468/dl.hv8q6z
title: Occurrence Download

description: A dataset containing 531 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Alsophila setosa Kaulf."
 ]
}

 The dataset includes 531 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037952-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3623639_d4.v1
title: Additional file 1 of Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries

description: Lists of samples (GSE and GSM identifiers) with microarray data for human brain and testes. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3623924_d3.v1
title: Additional file 2: Table S8. of Transcriptomic and proteomic insights into innate immunity and adaptations to a symbiotic lifestyle in the gutless marine worm Olavius algarvensis

description: Proteins potentially involved in symbiont interaction in O. algarvensis, all transcripts and proteins. (XLSX 92Â kb)
DOI: 10.6084/m9.figshare.c.3623939_d2.v1
title: MOESM4 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 4: Table S4. Performance of models developed on main dataset, with RandomForest, BayesNet, NaiveBayes, IBk and J48.
DOI: 10.6084/m9.figshare.c.3623951_d1.v1
title: Additional file 1: of Genomic profiling of CHEK2*1100delC-mutated breast carcinomas

description: Immune signature probe-sets. Excel spreadsheet with a list of probe-sets constituting the immune signature. (XLSX 18Â kb)
DOI: 10.6084/m9.figshare.c.3623939_d3.v1
title: MOESM3 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 3: Table S3. MERCI motifs extracted form proinflammatory and non-proinflammatory data.
DOI: 10.6084/m9.figshare.c.3623939_d4.v1
title: MOESM5 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 5: Table S5. . Performance of different machine learning models developed on alternate dataset.
DOI: 10.6084/m9.figshare.c.3623942_d3.v1
title: Additional file 3: Table S3a,b,c and d. of Tracking post-infectious fatigue in clinic using routine Lab tests

description: Supplemental tables containing summary statistics describing the significance and probability of false discovery for the effects of time and the time x group interaction for each of the clinical markers using a regression-based repeated measures model. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.c.3623939_d5.v1
title: MOESM2 of ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins

description: Additional file 2: Table S2. Dipeptide composition distribution between proinflammatory and non proinflammatory data.
DOI: 10.15468/dl.rvc4fe
title: Occurrence Download

description: A dataset containing 9322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Passerina amoena (Say, 1822)"
 ]
}

 The dataset includes 9322 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037953-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3624122_d7.v1
title: Additional file 9: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Putative conserved effectors. List of conserved sequence clusters that contain candidate effectors identified in this study by transcriptomics or proteomics, or previously identified [22, 23, 50]. (XLS 51 kb)
DOI: 10.6084/m9.figshare.c.3624122_d8.v1
title: Additional file 13: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus persicae genotype O. (GZ 12701 kb)
DOI: 10.6084/m9.figshare.c.3624122_d9.v1
title: Additional file 10: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Clusters. Resulting clusters (one line per cluster) from aphid sequences subjected to MCL clustering analysis (BLAST-MCL-clustering). Another clustering method was used to identify 1:1 orthologues by using reciprocal best BLAST hit analysis of all the datasets, resulting in an RBBH-orthologues network (one line per cluster). Putative pioneer effectors were identified and their sequences are reported. (XLSX 4051 kb)
DOI: 10.6084/m9.figshare.c.3624122_d10.v1
title: Additional file 6: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: GO enrichment analysis data for all species. (TXT 9449 kb)
DOI: 10.6084/m9.figshare.c.3624122_d11.v1
title: Additional file 14: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus persicae genotype F. (GZ 12050 kb)
DOI: 10.6084/m9.figshare.c.3624176_d1.v1
title: Additional file 2: of PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

description: PhosphOrtholog input file for Dataset 3. (CSV 153Â kb)
DOI: 10.6084/m9.figshare.c.3624182_d1.v1
title: Additional file 1: of Comparing species tree estimation with large anchored phylogenomic and small Sanger-sequenced molecular datasets: an empirical study on Malagasy pseudoxyrhophiine snakes

description: Samples used in analyses and which loci were successfully sequenced (NGS=Next generation sequencing; Cmos, COI, CytB, Rag2, and NAV intron 5=Sanger sequencing). (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3624122_d12.v1
title: Additional file 16: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Myzus cerasi. (GZ 13367 kb)
DOI: 10.6084/m9.figshare.c.3624176_d2.v1
title: Additional file 1: of PhosphOrtholog: a web-based tool for cross-species mapping of orthologous protein post-translational modifications

description: PhosphOrtholog input file for Dataset 1. (CSV 505Â kb)
DOI: 10.6084/m9.figshare.c.3624122_d13.v1
title: Additional file 17: of Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

description: Predicted nucleotide coding sequences for Rhopalosiphum padi and Aphis glycines. (GZ 8032 kb)
DOI: 10.17632/sv5kv6tk94.1
title: Dataset for unrevealing the application of MGIDI and FAI-BLUP models in the identification of high-yielding and stable barley genotypes

description: Raw dataset for calculation of stability parameters related to the report entitled "Dataset for unrevealing the application of MGIDI and FAI-BLUP models in the identification of high-yielding and stable barley genotypes"
DOI: 10.17632/sv5kv6tk94.2
title: Dataset for unrevealing the application of MGIDI and FAI-BLUP models in the identification of high-yielding and stable barley genotypes

description: Raw dataset for calculation of stability parameters related to the report entitled "Dataset for unrevealing the application of MGIDI and FAI-BLUP models in the identification of high-yielding and stable barley genotypes"
DOI: 10.6084/m9.figshare.c.3624413_d1.v1
title: Additional file 12: of Close ecological relationship among species facilitated horizontal transfer of retrotransposons

description: HTT transcriptsâ   expression change in two BioProjects. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.c.3624416_d1.v1
title: Additional file 3: Table S2. of Metabolic consequences of inflammatory disruption of the blood-brain barrier in an organ-on-chip model of the human neurovascular unit

description: Tentative structural identifications. (XLSX 69 kb)
DOI: 10.17632/t6r8bnhbc3.1
title: best

description: my date
DOI: 10.6084/m9.figshare.c.3624344_d14.v1
title: Additional file 23: of Molecular foundations of chilling-tolerance of modern maize

description: Possible functions and cellular localization of products of genes specific to S50676 inbred line. (XLSX 92 kb)
DOI: 10.6084/m9.figshare.c.3624413_d2.v1
title: Additional file 2: of Close ecological relationship among species facilitated horizontal transfer of retrotransposons

description: Longest protein sequences of 10 L. vannamei TE families. (FASTA 10 kb)
DOI: 10.6084/m9.figshare.c.3624344_d15.v1
title: Additional file 24: of Molecular foundations of chilling-tolerance of modern maize

description: Possible functions and cellular localization of products of genes specific to S160 inbred line. (XLSX 168 kb)
DOI: 10.6084/m9.figshare.28046555.v1
title: 129915_CGATGT_1_2x_SOB_R1_001_Reads_per_uniqueLocation.bw

description: G-quadruplex (G4) structures can form in guanine-rich DNA or RNA and have been found to modulate cellular processes, including replication, transcription, and translation. Many studies on the cellular roles of G4s have focused on eukaryotic systems, with far fewer probing bacterial G4s. Using a chemical-genetic approach, we identified genes in <em>Escherichia coli</em> that are important for growth in G4-stabilizing conditions. Reducing levels of translation elongation factor Tu or slowing translation initiation or elongation with kasugamycin, chloramphenicol, or spectinomycin suppress the effects of G4-stabilizing compounds. In contrast, reducing the expression of specific translation termination or ribosome recycling proteins is detrimental to growth in G4- stabilizing conditions. Proteomic and transcriptomic analyses demonstrate that ribosome assembly factors and other proteins involved in translation are less abundant in G4-stabilizing conditions. Our results support a model in which reducing the rate of translation by altering translation initiation/elongation, or ribosome assembly can compensate for G4-related stress in E. coli.