cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29126873.v2
title: Construction of BSseq Object from Preprocessed Methylation Data

description: This R script aggregates multiple preprocessed methylation count files into a single <code>BSseq</code> object using the <b>DSS</b> and <b>bsseq</b> packages. The generated object is suitable for differential methylation analysis in bisulfite sequencing (BS-seq) experiments.The script expects input files produced from a binomial filtering step (e.g., from a script like <code>formattingv2.r</code>), structured in DSS-compatible format with columns: <code>chr</code>, <code>pos</code>, <code>N</code>, and <code>X</code>.<b>Process Overview:</b>Loads 40 paired <code>.txt</code> files representing different samples and conditions.Constructs a <code>BSseq</code> object using <code>makeBSseqData()</code>, associating each dataset with a sample ID.Saves the full R environment to <code>Loaded_Dataframe.RData</code> for downstream analysis (e.g., in <code>experimentaldesign.r</code>).<b>Inputs:</b>40 DSS-formatted methylation files (<code>W1__DSS_Format.txt</code>, ..., <code>W40__DSS_Format.txt</code>), each with:<code>chr</code>: chromosome<code>pos</code>: position<code>N</code>: total read coverage<code>X</code>: number of methylated reads<b>Outputs:</b>A <code>BSseq</code> object containing all samples.Saved R workspace as <code>Loaded_Dataframe.RData</code> (contains the <code>BSobj</code>).<b>Software Requirements:</b>R (≥ 4.0)Packages: <code>DSS</code>, <code>bsseq</code><b>Usage Notes:</b>Ensure all 40 DSS format files are present in the working directory before running.The sample labels used in <code>makeBSseqData()</code> (e.g., <code>"D6C1"</code>, <code>"D6D1"</code>, etc.) should align with your experimental design matrix for consistency in downstream modeling.The saved <code>.RData</code> file is expected by scripts performing differential methylation analysis, such as <code>experimentaldesign.r</code>.
DOI: 10.6084/m9.figshare.29126873.v1
title: Construction of BSseq Object from Preprocessed Methylation Data

description: This R script aggregates multiple preprocessed methylation count files into a single <code>BSseq</code> object using the <b>DSS</b> and <b>bsseq</b> packages. The generated object is suitable for differential methylation analysis in bisulfite sequencing (BS-seq) experiments.The script expects input files produced from a binomial filtering step (e.g., from a script like <code>formattingv2.r</code>), structured in DSS-compatible format with columns: <code>chr</code>, <code>pos</code>, <code>N</code>, and <code>X</code>.<b>Process Overview:</b>Loads 40 paired <code>.txt</code> files representing different samples and conditions.Constructs a <code>BSseq</code> object using <code>makeBSseqData()</code>, associating each dataset with a sample ID.Saves the full R environment to <code>Loaded_Dataframe.RData</code> for downstream analysis (e.g., in <code>experimentaldesign.r</code>).<b>Inputs:</b>40 DSS-formatted methylation files (<code>W1__DSS_Format.txt</code>, ..., <code>W40__DSS_Format.txt</code>), each with:<code>chr</code>: chromosome<code>pos</code>: position<code>N</code>: total read coverage<code>X</code>: number of methylated reads<b>Outputs:</b>A <code>BSseq</code> object containing all samples.Saved R workspace as <code>Loaded_Dataframe.RData</code> (contains the <code>BSobj</code>).<b>Software Requirements:</b>R (≥ 4.0)Packages: <code>DSS</code>, <code>bsseq</code><b>Usage Notes:</b>Ensure all 40 DSS format files are present in the working directory before running.The sample labels used in <code>makeBSseqData()</code> (e.g., <code>"D6C1"</code>, <code>"D6D1"</code>, etc.) should align with your experimental design matrix for consistency in downstream modeling.The saved <code>.RData</code> file is expected by scripts performing differential methylation analysis, such as <code>experimentaldesign.r</code>.
DOI: 10.5281/zenodo.15494600
title: Consequences of excessive gaming
DOI: 10.5281/zenodo.15494601
title: Consequences of excessive gaming
DOI: 10.5281/zenodo.15405447
title: scRNA-seq and multiome datasets of the regenerative state following intestinal stem cell depletion in normal human colon organoids
DOI: 10.5281/zenodo.15405448
title: scRNA-seq and multiome datasets of the regenerative state following intestinal stem cell depletion in normal human colon organoids
DOI: 10.15468/dl.fjkxd9
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((102.20518 49.68588,121.11346 49.68588,121.11346 55.83177,102.20518 55.83177,102.20518 49.68588))",
 "TaxonKey is Lathyrus quinquenervius (Miq.) Litv."
 ]
}

 The dataset includes 61 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015268-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/gk2g6vsrym.1
title: Practices associated with mastitis and cost. Supplementary material

description: The objectives of this study were to estimate the adoption rate of udder health and herd management practices based on a random sample of pasture-based dairy farms in Uruguay, and to determine their association with bulk tank somatic cell count and with partial costs of subclinical mastitis (yield losses and penalties). 

Farm Survey Instrument used to collect general farm information, data on milking routine, record keeping &targets, mastitis detection & treatments, recent cases & milk withheld from the bulk tank, milking equipment & maintenance, cow comfort, and dry-cow management.
DOI: 10.17632/d82ny8ymtj.1
title: PETDATA

description: PET data Coding
DOI: 10.17632/9drgjkdd4p
title: haldidata

description: Data tes
DOI: 10.17632/9drgjkdd4p.1
title: haldidata

description: Data tes
DOI: 10.5281/zenodo.15226468
title: Consensus SV Reference Data
DOI: 10.5281/zenodo.15226469
title: Consensus SV Reference Data
DOI: 10.15468/dl.x2387g
title: Occurrence Download

description: A dataset containing 2135 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Podranea Sprague"
 ]
}

 The dataset includes 2135 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015269-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17182/hepdata.45429.v1/t10
title: "Table 10" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section for events with at least 3-jets as a function of the PT of the leading jet in GAMMA P centre of mass frame.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t11
title: "Table 11" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section for events with at least 3-jets as a function of the pseudorapidity difference between the two leading.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t12
title: "Table 12" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of x for events with at least 3 jets with one forward jet and two central jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t13
title: "Table 13" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the pseudorapidity of the leading jet for events with at least 3 jets with one forward jet and two central jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t9
title: "Table 9" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section for events with at least 3-jets as a function of the three jet angle PHI (see text of article).
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t14
title: "Table 14" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the PT of the leading jet in the GAMMA* P rest frame for events with at least 3 jets with one forward jet and two central jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t15
title: "Table 15" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of X for events with at least 3 jets with two forward jets and one central jet.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t16
title: "Table 16" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the pseudorapidity of the leading jet for events with at least 3 jets with two forward jets and one central jet.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t17
title: "Table 17" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the PT of the leading jet in the GAMMA* P rest frame for events with at least 3 jets with two forward jets and one central jet.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t18
title: "Table 18" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the pseudorapidity of the leading jet for events with at least 3 jets and the PT of the leading jet in the GAMMA* P rest frame &gt; 20 GeV.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t19
title: "Table 19" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of X for events with at least 3 jets and the PT of the leading jet in the GAMMA* P rest frame &gt; 20 GeV.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t20
title: "Table 20" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function of the difference in the pseudorapidity of the leading and fourth jets for events with at least 4 jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t21
title: "Table 21" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function X2 for events with at least 4 jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t22
title: "Table 22" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function the jet angle THETA for events with at least 4 jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45429.v1/t23
title: "Table 23" of "Three- and Four-jet Production at Low x at HERA"

description: Differential cross section as a function the PT of the leading jet in GAMMA* P rest frame for events with at least 4 jets.
description: DESY-HERA. Measurement of the cross sections for DIS 3- and 4-jet production in collisions of 27.5 GeV positrons with 920 GeV protons at a centre of mass energy of 319 GeV. The data come from the 1999-2000 running periods with a total integrated luminosity of 44.2 pb-1. The data cover the Q**2 region from 5 to 80 GeV**2 and X from 0.0001 to 0.01. Cross sections are presented for a number of different variables including Xi = 2*Ei/(E1+E2+E3). Jets are ordered so that E1 & gt; E2 & gt; E3. See the text of the article for detailed definitions. Data are also given for events with one forward jet and two central jets and also with two forward jets and one central jet.
DOI: 10.17182/hepdata.45516.v1/t1
title: "Table 1" of "Measurement of (anti)deuteron and (anti)proton production in DIS at HERA"

description: Measured invariant cross section for P production.
description: DESY-HERA. Measurement of cross sections for the production of (anti) deuterons in DIS of electrons and positrons on protons at centre-of-mass energies 300 and 318 GeV. The data which has a total integrated luminosity of 120 pb-1 was taken between 1996 and 2000 with E+ P data at 300 and 318 GeV and E- P data at 318 GeV. Data are given for cross sections and ratios as a function of PT/M. Also given are values for the coalesence parameter, B2, from a coalesence model. See the text of the paper for details.
DOI: 10.17182/hepdata.45516.v1/t2
title: "Table 2" of "Measurement of (anti)deuteron and (anti)proton production in DIS at HERA"

description: Measured invariant cross section for DEUT production.
description: DESY-HERA. Measurement of cross sections for the production of (anti) deuterons in DIS of electrons and positrons on protons at centre-of-mass energies 300 and 318 GeV. The data which has a total integrated luminosity of 120 pb-1 was taken between 1996 and 2000 with E+ P data at 300 and 318 GeV and E- P data at 318 GeV. Data are given for cross sections and ratios as a function of PT/M. Also given are values for the coalesence parameter, B2, from a coalesence model. See the text of the paper for details.
DOI: 10.17182/hepdata.45516.v1/t3
title: "Table 3" of "Measurement of (anti)deuteron and (anti)proton production in DIS at HERA"

description: Measured invariant cross section for PBAR production.
description: DESY-HERA. Measurement of cross sections for the production of (anti) deuterons in DIS of electrons and positrons on protons at centre-of-mass energies 300 and 318 GeV. The data which has a total integrated luminosity of 120 pb-1 was taken between 1996 and 2000 with E+ P data at 300 and 318 GeV and E- P data at 318 GeV. Data are given for cross sections and ratios as a function of PT/M. Also given are values for the coalesence parameter, B2, from a coalesence model. See the text of the paper for details.
DOI: 10.17182/hepdata.45516.v1/t4
title: "Table 4" of "Measurement of (anti)deuteron and (anti)proton production in DIS at HERA"

description: Measured invariant cross section for DEUTBAR production.
description: DESY-HERA. Measurement of cross sections for the production of (anti) deuterons in DIS of electrons and positrons on protons at centre-of-mass energies 300 and 318 GeV. The data which has a total integrated luminosity of 120 pb-1 was taken between 1996 and 2000 with E+ P data at 300 and 318 GeV and E- P data at 318 GeV. Data are given for cross sections and ratios as a function of PT/M. Also given are values for the coalesence parameter, B2, from a coalesence model. See the text of the paper for details.