cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.59753
title: Sbml Test Suite Syntactic Test Cases 3.2.0

description: The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML support provided in a software package. A core part of the SBML Test Suite is the collection of test cases. There are 3 sets of tests: <strong>semantic</strong> (for deterministic simulation behavior), <strong>stochastic</strong>(for stochastic simulation behavior), and <strong>syntactic</strong> (for basic parsing).

This is the version 3.2.0 release of the s<strong>yntactic</strong> test cases archive.

For more information about SBML and the SBML Test Suite, please visit http://sbml.org.
DOI: 10.13012/b2idb-7434833_v1
title: Dataset: Landscape evolution models using the stream power incision model show unrealistic behavior when m/n equals 0.5

description: This dataset contains all the numerical results (digital elevation models) that are presented in the paper "Landscape evolution models using the stream power incision model show unrealistic behavior when m/n equals 0.5." The paper can be found at: http://www.earth-surf-dynam-discuss.net/esurf-2017-15/

The paper has been accepted, but the most up to date version may not be available at the link above. If so, please contact Jeffrey Kwang at jeffskwang@gmail.com to obtain the most up to date manuscript.
DOI: 10.5281/zenodo.1068362
title: Bio2Vec

description: Results from tool executed using PubRunner on MEDLINE corpus. Code for the tool can be found at https://github.com/NCBI-Hackathons/PubRunner/tree/master/server/tools/Bio2Vec/1.0
DOI: 10.5281/zenodo.1068363
title: Bio2Vec

description: Results from tool executed using PubRunner on MEDLINE corpus. Code for the tool can be found at https://github.com/NCBI-Hackathons/PubRunner/tree/master/server/tools/Bio2Vec/1.0
DOI: 10.5281/zenodo.31479
title: Angiotensin Ii Status And Sympathetic Activation Among Hypertensive Patients In Uganda: A Cross-Sectional Study

description: A cross sectional study conducted at Mulago, the national referral hospital.  Blood samples were taken to measure angiotensin II, metanephrines, normetanephrines and urine samples for creatinine and sodium. The angiotensin II categories were defined using the Mosby's Diagnostic and Laboratory Test References. 9th ed while the metanephrines and normetanephrine cartegories were defined using the Makerere University Biosafety II Immunology Laboratory reference values.
DOI: 10.5281/zenodo.31503
title: Supporting Data: The Biogeographic Origin Of A Radiation Of Trees In Madagascar:  Implications For The Assembly Of A Tropical Forest Biome

description: This directory contains xml files (which in turn contain concatenated alignments), newick, and phylip formatted tree files. Code and scripts used for generating figures, phylogenies and biogeographic models is available on request.

~/trees/ contains tree files and maximum clade credibility trees from the three phylogenetic inferences: 1) Canarieae with a fossil tip; 2) Canarieae with fossil nodes; and 3) Canarieae with fossil nodes, but without the Canarieae fossil node calibration. See the paper and supplemental text for more information.

~/trees/RAxML/ contains the RAXML starter trees used  

~/xml_files/ contains the xml files used for Bayesian phylogenetic inference in BEAST for all three phylogenetic inferences (see above). Concatenated alignments of molecular data can be found within the xml files.
DOI: 10.5281/zenodo.31557
title: Module-Based Classification Of Owl Ontologies - Experiment 5 Dataset

description: The results of Experiment 5 (Chapter 7) in PhD Thesis "Module-based classification of OWL ontologies - Experiment 5 Dataset", both Experiment runs (K1, K2).
DOI: 10.5281/zenodo.31590
title: Module-Based Classification Of Owl Ontologies - Experiment 1+2 Dataset (Benign Module Conjecture)

description: The results of Experiment 1+2 (Chapter 5) in PhD Thesis "Module-based classification of OWL ontologies", both results for Benign Module Conjecture and Revised Benign Module Conjecture.
DOI: 10.5281/zenodo.31621
title: Module-Based Classification Of Owl Ontologies - Experiment 3 Dataset (Subsumption Test Hardness Survey Bioportal)

description: The results of Experiment 3 (Chapter 6) in PhD Thesis "Module-based classification of OWL ontologies", results of the subsumption test survey across BioPortal. Contains only the final data tables and the analysis scripts (not the raw data and intermediate states).
DOI: 10.5281/zenodo.49749
title: Openaire Lod Dump

description: OpenAIRE LOD Dump
DOI: 10.5281/zenodo.49813
title: Europe Pubmed Central Lite Metadata Search Index

description: Metadata of all 1,264,182 Open Access articles from the Europe PubMed Central Lite dataset, parsed from the fulltext XML (ftp://ftp.ebi.ac.uk/pub/databases/pmc/oa/) and converted to bibJSON (http://okfnlabs.org/bibjson/), then indexed with search-index (https://github.com/fergiemcdowall/search-index), and finally exported as a snapshot.

An example record is included in the `additional notes` field below.

To use this, you'll need to import the snapshot into a search-index instance: https://github.com/fergiemcdowall/search-index/blob/master/doc/replicate.md.
description: {
  "title": "Inhaled environmental\/occupational irritants and allergens: mechanisms of cardiovascular and systemic responses. Introduction.",
  "type": "Research Article",
  "identifier": [
    {
      "type": "pmcid",
      "id": "1240568"
    },
    {
      "type": "pmid",
      "id": "11544150"
    },
    {
      "type": "pii",
      "id": "sc271_5_1835"
    }
  ],
  "author": [
    {
      "surname": "Yeates",
      "given_names": "D B"
    },
    {
      "surname": "Mauderly",
      "given_names": "J L"
    }
  ],
  "journal": {
    "name": "Environmental Health Perspectives",
    "shortname": "Environ Health Perspect",
    "identifier": "0091-6765"
  },
  "year": "2001"
}
DOI: 10.5281/zenodo.49822
title: Europe Pubmed Central Lite Metadata (Json Object Stream)

description: The raw JSON object stream associated with https://zenodo.org/deposit/107781/
DOI: 10.5281/zenodo.49831
title: Data Used For Alife 2016 Paper "Critical Mutation Rate Has An Exponential Dependence On Population Size For Eukaryotic-Length Genomes"

description: The results files in this directory contain the evolved critical mutation rates, exponential or quadratic curves produced by curve-fitting using the given data in R, and biological data used for comparison in the following paper:

Critical Mutation Rate has an Exponential Dependence on Population Size for Eukaryotic-Length Genomes, accepted for publication in ALife 2016: Proceedings of the 15th International Conference on the Synthesis and Simulation of Living Systems (ALIFE XV)
DOI: 10.5281/zenodo.49870
title: Survey Data For "Remote Sensing & Gis Training In Ecology And Conservation"

description: This file provides the raw data of an online survey intended at gathering information regarding remote sensing (RS) and Geographical Information Systems (GIS) for conservation in academic education. The aim was to unfold best practices as well as gaps in teaching methods of remote sensing/GIS, and to help inform how these may be adapted and improved. A total of 73 people answered the survey, which was distributed through closed mailing lists of universities and conservation groups.
DOI: 10.5281/zenodo.59815
title: Template Rpp Game Novita Wandasari

description: Game RPP
DOI: 10.5281/zenodo.59816
title: Deskrispsi Kegiatan Materi Bilangan Bulat Kelas 7

description: RPP untuk materi pembelajaran bilangan bulat untuk kelas 7 SMP
DOI: 10.13012/b2idb-7434833_v2
title: Dataset: Landscape evolution models using the stream power incision model show unrealistic behavior when m/n equals 0.5

description: This dataset contains all the numerical results (digital elevation models) that are presented in the paper "Landscape evolution models using the stream power incision model show unrealistic behavior when m/n equals 0.5." The paper can be found at: http://www.earth-surf-dynam-discuss.net/esurf-2017-15/ The paper has been accepted, but the most up to date version may not be available at the link above. If so, please contact Jeffrey Kwang at jeffskwang@gmail.com to obtain the most up to date manuscript.
DOI: 10.5281/zenodo.1069126
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1069127
title: Moma Collection - Automatic Monthly Update

description: Temporary Description
DOI: 10.5281/zenodo.1069602
title: Cancermine

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.1069603
title: Cancermine

description: Results from tool executed using PubRunner on MEDLINE corpus.
DOI: 10.5281/zenodo.31623
title: Module-Based Classification Of Owl Ontologies - Experiment 4 Dataset (Subsumption Test Hardness Under Modularity)

description: The results of Experiment 4 (Chapter 6) in PhD Thesis "Module-based classification of OWL ontologies", results of the survey exploring subsumption test under modularity. Contains only the final data tables and the analysis scripts (not the raw data and intermediate states).
DOI: 10.5281/zenodo.31710
title: Deformation Compatibility In A Single Crystalline Ni Superalloy

description: This CurlF raw data folder contains 9 subfolder, which are the main figures in this paper. In each subfolder a raw data and a matlab code to plot such figure are included. Readers can load the source data first into matlab and open matlab script to replicate figures in this paper.

 The variables in source matlab file are explicitly defined as shown in each the caption of each figure. Comments are added in matlab plot code to explain the structure of it.

If Readers need further information, please feel free to contact jun.jiang@imperial.ac.uk
DOI: 10.5281/zenodo.31751
title: Parametric Resonance In Spherical Immersed Elastic Shells - Supplementary Material

description: Supplementary material for "Parametric Resonance in Spherical Immersed Elastic Shells" published in SIAM Journal on Applied Mathematics. 

We provide data files for a benchmark fluid-structure interaction problem of a spherical elastic shell immersed in a viscous incompressible fluid.
DOI: 10.5281/zenodo.31817
title: Supporting Information: Analysis Of Attentional Bias Towards Attractive And Unattractive Body Regions Among Overweight Males And Females: An Eye-Movement Study.

description: This is the data set as supporting information, provided as .csv file.

Further information is available on request.
DOI: 10.5281/zenodo.49899
title: Hacker News Lda2Vec Preprocessed Text

description: Raw data: https://zenodo.org/record/45901

Preprocessed dataset into tokenized forms with noun chunks
DOI: 10.5281/zenodo.49900
title: Hacker News Lda2Vec Model Word Vectors

description: See also: https://zenodo.org/record/45901 and https://zenodo.org/record/49899
DOI: 10.5281/zenodo.49902
title: Hacker News Lda2Vec Model Pretrained Word Vectors

description: See also: https://zenodo.org/record/45901 and https://zenodo.org/record/49899 and https://zenodo.org/record/49900
DOI: 10.5281/zenodo.49903
title: Hacker News Lda2Vec Pretrained Word Vectors

description: See also: https://zenodo.org/record/45901 and https://zenodo.org/record/49899 and https://zenodo.org/record/49900 and https://zenodo.org/record/49902
DOI: 10.5281/zenodo.49944
title: A Survey Of The Sorghum Transcriptome Using Single-Molecule Long Reads

description: Alternative splicing and alternative polyadenylation (APA) of pre-mRNAs greatly contribute to transcriptome diversity, coding capacity of a genome and gene regulatory mechanisms in eukaryotes.  Second-generation sequencing technologies have been extensively used to analyze transcriptomes.  However, a major limitation of short-read data is that it is difficult to accurately predict full-length splice isoforms. Here we sequenced the sorghum transcriptome using Pacific Biosciences single molecule real time long-read isoform sequencing and developed a pipeline called TAPIS (Transcriptome Analysis Pipeline for Isoform Sequencing) to identify full-length splice isoforms and APA sites. Our analysis reveals transcriptome-wide full-length isoforms at an unprecedented scale with over 11,000 novel splice isoforms.  Additionally, we uncover APA of ~11,000 expressed genes and more than 2,100 novel genes. These results greatly enhance sorghum gene annotations and aid in studying gene regulation in this important bioenergy crop. The TAPIS pipeline will serve as a useful tool to analyze Iso-Seq data from any organism.
description: line21: control
line22: PEG treated
DOI: 10.5281/zenodo.49973
title: Khat And Blood Pressure Data

description: Database to confirm conclusion
DOI: 10.5281/zenodo.49974
title: Accompanying Data To "Empowerment Or Concealed Compliance? A Review Of Literature On Mobile Ict Solutions  For Patient Empowerment"

description: This file contains the details of the systematic literature review that underlies the article "Empowerment or concealed compliance? A review of literature on mobile ICT solutions for patient empowerment". The article will be published in the proceedings of ACM PETRA 2016. This file contains all the coding tables, and the list of included primary studies.
DOI: 10.5281/zenodo.50002
title: Myotis Myotis Tdoa

description: TDOA(t) of Myotis myotis recording
DOI: 10.6084/m9.figshare.3546936
title: Appendix E. Significant rarefaction curves for differences in species richness of total arthropods, parasites, natural enemies (predators and parasites), omnivores, and detrivores on plants infected or uninfected with the Neotyphodium endophyte over the four sampling periods of the study.

description: Significant rarefaction curves for differences in species richness of total arthropods, parasites, natural enemies (predators and parasites), omnivores, and detrivores on plants infected or uninfected with the Neotyphodium endophyte over the four sampling periods of the study.
DOI: 10.6084/m9.figshare.3547089.v1
title: Appendix C. Boxplots displaying the range in lidar and optical predictor values relative to bird habitat quality indices.

description: Boxplots displaying the range in lidar and optical predictor values relative to bird habitat quality indices.
DOI: 10.5281/zenodo.31904
title: Data Release For "Orchid: A Generalized Framework For Taxonomic Classification Of Images Using Evolved Artificial Neural Networks"

description: <strong>Abstract</strong>

Taxonomic expertise for the identification of species is rare and costly. On-going advances in computer vision and machine learning have led to the development of numerous semi- and fully automated species identification systems. However, these systems are rarely agnostic to specific morphology, rarely can perform taxonomic “approximation” (by which we mean partial identification at least to higher taxonomic level if not to species), and frequently rely on costly scientific imaging technologies.

We present a generic, hierarchical identification system for automated taxonomic approximation of organisms from images. We assessed the effectiveness of this system using photographs of slipper orchids (Cypripedioideae), for which we implemented image pre-processing, segmentation, and colour and shape feature extraction algorithms to obtain digital phenotypes for 116 species. The identification system trained on these digital phenotypes uses a nested hierarchy of artificial neural networks for pattern recognition and automated classification that mirrors the Linnean taxonomy, such that user-submitted photos can be assigned a genus, section, and species classification by traversing this hierarchy.

Performance of the identification system varied depending on photo quality, number of species included for training, and desired taxonomic level for identification. High quality photos were scarce for some taxa and were under-represented in the training set, resulting in imbalanced network training. The image features used for training were sufficient to reliably identify photos to the correct genus but less so to the correct section and species.

The outcomes of this project include a library of feature extraction algorithms called <em>ImgPheno</em>, a collection of scripts for neural network training called <em>NBClassify</em>, a library for evolutionary optimization of artificial neural network construction called <em>AI::FANN::Evolving</em> and a planned web application called <em>OrchID</em> for identification of user-submitted images. All project outcomes are open source and freely available.

<strong>About this release</strong>

This release corresponds belongs with our response to the reviewers of PLoS One. At this stage of the review cycle the manuscript is assessed as 'minor revision'. Consequently, we don't anticipate making more releases until publication.
DOI: 10.5281/zenodo.31916
title: Robustness Of Massively Parallel Sequencing Platforms

description: The improvements in high throughput sequencing technologies (HTS) made clinical sequencing projects such as ClinSeq and Genomics England feasible. Although there are significant improvements in accuracy and reproducibility of HTS based analyses, the usability of these types of data for diagnostic and prognostic applications necessitates a near perfect data generation. To assess the usability of a widely used HTS platform for accurate and reproducible clinical applications in terms of robustness, we generated whole genome shotgun (WGS) sequence data from the genomes of two human individuals in two different genome sequencing centers. After analyzing the data to characterize SNPs and indels using the same tools (BWA, SAMtools, and GATK), we observed significant number of discrepancies in the call sets. As expected, the most of the disagreements between the call sets were found within genomic regions containing common repeats and segmental duplications, albeit only a small fraction of the discordant variants were within the exons and other functionally relevant regions such as promoters. We conclude that although HTS platforms are sufficiently powerful for providing data for first-pass clinical tests, the variant predictions still need to be confirmed using orthogonal methods before using in clinical applications.
DOI: 10.5281/zenodo.31923
title: [Broken Attachment] Off-Grid Solar Energy Services Enabled And Evaluated Through Information Technology

description: Go to this version for the fixed attachment:

https://zenodo.org/deposit/63871/
DOI: 10.5281/zenodo.50003
title: Myotis Nattereri Tdoa

description: TDOA(t) of Myotis nattereri recording
DOI: 10.5281/zenodo.50005
title: Myotis Myotis Baseline Trajectory

description: Myotis myotis baseline trajectory Myotis myotis baseline trajectory  x(t), y(t), z(t)
DOI: 10.5281/zenodo.50006
title: Myotis Myotis Trajectory By Our Method

description: Myotis myotis trajectory by our method  x(t), y(t), z(t)
DOI: 10.5281/zenodo.50007
title: Myotis Nattereri Baseline Trajectory

description: Myotis nattereri baseline trajectory  x(t), y(t), z(t)
DOI: 10.5281/zenodo.50008
title: Myotis Nattereri Trajectory By Our Method

description: Myotis nattereri trajectory by our method  x(t), y(t), z(t)
DOI: 10.5281/zenodo.50009
title: Pipistrellus Pipistrellus Baseline Trajectory

description: Pipistrellus pipistrellus baseline trajectory   x(t), y(t), z(t)
DOI: 10.6084/m9.figshare.3547287.v1
title: Appendix B. Landsat imagery illustrating surface water variability across a hydrologic gradient from deluge to drought.

description: Landsat imagery illustrating surface water variability across a hydrologic gradient from deluge to drought.
DOI: 10.22021/bbldntz201711
title: The Linked Open British National Bibliography – Books. 1950/2017-11 – N-Triples
DOI: 10.22021/bbldrdfz201711
title: The Linked Open British National Bibliography – Books. 1950/2017-11 – RDF/XML
DOI: 10.5281/zenodo.1092685
title: Data For: Generation Of Sanitation System Options For Urban Planning Considering Novel Technologies

description: This data has been used (1) to quantify the appropriateness of a set of sanitation technologies for a small town (Katarnyia) in Nepal and (2) to generate sanitation system options from the appropriate technologies as an input into strategic sanitation planning using a structured decision making process. For (1), the appropriateness is quantified based on a set of criteria, also called screening criteria. These criteria include technical, socio-demographic, climatic, and institutional aspects and are quantified using uncertainty functions in order to account for the quality and quantity of available input information.

The data contains raw data as well as modelling results. The raw data is a compilation of information collected from literature, information collected through a household survey in the small town, field observations. They are all used to describe the screening criteria for the studied sanitation technologies and the small town. Results include: (1) the outcome of the technology appropriateness assessment (technology appropriateness scores); and (2) the sanitation system options (all possible sanitation systems built from the appropriate technologies, and a smaller set of divers and highly appropriate sanitation system options as an input into decision-making).
DOI: 10.5281/zenodo.1092686
title: Data For: Generation Of Sanitation System Options For Urban Planning Considering Novel Technologies

description: This data has been used (1) to quantify the appropriateness of a set of sanitation technologies for a small town (Katarnyia) in Nepal and (2) to generate sanitation system options from the appropriate technologies as an input into strategic sanitation planning using a structured decision making process. For (1), the appropriateness is quantified based on a set of criteria, also called screening criteria. These criteria include technical, socio-demographic, climatic, and institutional aspects and are quantified using uncertainty functions in order to account for the quality and quantity of available input information.

The data contains raw data as well as modelling results. The raw data is a compilation of information collected from literature, information collected through a household survey in the small town, field observations. They are all used to describe the screening criteria for the studied sanitation technologies and the small town. Results include: (1) the outcome of the technology appropriateness assessment (technology appropriateness scores); and (2) the sanitation system options (all possible sanitation systems built from the appropriate technologies, and a smaller set of divers and highly appropriate sanitation system options as an input into decision-making).
DOI: 10.5281/zenodo.32044
title: Tests On Thin Reinforced Concrete Walls Subjected To In-Plane And Out-Of-Plane Cyclic Loading - General

description: The entire dataset describes an experimental campaign on five thin T-shaped reinforced concrete walls, including: details on the test units, materials, test setup, loading protocol, instrumentation, main features of each unit’s response, organization of the provided test data, and examples of derived data. The tests aimed at assessing the influence of wall thickness on member stability, the role of lap splices on damage distribution and displacement ductility, and the effects of the simultaneous application of out-of-plane loading on the member response.
DOI: 10.5281/zenodo.32081
title: Pressure-Induced Amorphisation And A New High Density Amorphous Metallic Phase In Matrix-Free Ge Nanoparticles: Simulation Data

description: The folder contains:

-Pseudopotential files for Ge and H in the .recpot format used in all calculations.

-Input and output files for constant enthalpy geometry relaxations of hydrogenated Ge nanocrystals using the electronic enthalpy method within ONETEP (version 3.3).

-Input and output files for the DFPT calculations performed with CASTEP (version 6.01).