cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kcbdsq
title: Occurrence Download

description: A dataset containing 26256 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Inventaire de la flore de Gironde 2014-2019 - Inventaire de la flore de Gironde 2018"
 ]
}

 The dataset includes 26256 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231893-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gnjwe
title: Occurrence Download

description: A dataset containing 754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Amphitecna gentryi W.C.Burger, Amphitecna haberi A.H.Gentry, Amphitecna isthmica (A.H.Gentry) A.H.Gentry, Aiouea brenesii (Standl.) R.Rohde, Aiouea chavarriana (Hammel) R.Rohde, Aiouea neurophylla (Mez & Pittier) R.Rohde, Acoura obscura (Swainson, 1839), Aiouea obscura van der Werff, Aiouea pittieri Rohwer, Aiouea tonduzii (Mez) R.Rohde, Amyris brenesii Standl., Amyris magnifolia Gómez-Laur. & Q.Jiménez)"
 ]
}

 The dataset includes 754 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014660-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqk924
title: Occurrence Download

description: A dataset containing 3928 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Copaifera langsdorffii Desf."
 ]
}

 The dataset includes 3928 records from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0231864-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wqi45i
title: Occurrence Download

description: A dataset containing 354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Miconia asperrima Triana"
 ]
}

 The dataset includes 354 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014655-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/qd62od
title: Wuhle - Brücke/ Mosbacher Straße

description: This dataset holds the observations recorded during the GEO Biodiversity Day "Wuhle - Brücke/ Mosbacher Straße" in Berlin, Mosbacher Str.
DOI: 10.6084/m9.figshare.26160235
title: Adaptative machine vision with microsecond-level accurate perception beyond human retina

description: Contains all the test data from the manuscript.
DOI: 10.6084/m9.figshare.26160235.v1
title: Adaptative machine vision with microsecond-level accurate perception beyond human retina

description: Contains all the test data from the manuscript.
DOI: 10.15468/a7evqr
title: Tag der Artenvielfalt am Bruckenwasen

description: This dataset holds the observations recorded during the GEO Biodiversity Day "Tag der Artenvielfalt am Bruckenwasen" in Wernau
DOI: 10.15468/dl.vlzlvt
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microgecko helenae Nikolsky, 1907"
 ]
}

 The dataset's 4 records were derived from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006846-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/6xhnfb
title: Report on the Danish Oceanographical Expeditions 1908-1910 to the Mediterranean and adjacent seas- Engraulidae-Clupeidae

description: Larvae of fish from families Engraulidae and Clupeidae were sampled. Sampling was mainly pelagic, thus mainly by Petersen's young fish trawl. Data proceed from the Thor expeditions 1908-1910 but data from other expeditions (Thor 1905 and 1906) and other vessels (Nordboen and Pangan) are incorporated in the report, encompassing years 1904-1911
DOI: 10.15468/dl.ffkgry
title: Occurrence Download

description: A dataset containing 4156 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Manilkara zapota (L.) P.Royen"
 ]
}

 The dataset includes 4156 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006845-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.63532
title: Occurrence of mammalia relicts at site Kemathenhöhle
DOI: 10.1594/pangaea.64249
title: Occurrence of mammalia relicts at site Nietoperzowa
DOI: 10.15468/zlnq2n
title: CardObs : Observations naturalistes issues de l'outil CardObs-Données naturalistes de Joss DEFFARGES

description: Les données issues de l'outil de gestion CardObs et de son application mobile Carnat (hors programme relavant d'un cadre d'acquisition spécifique) regroupent les observations de naturalistes expérimentés. Ces observations concernent la faune, la flore et la fonge tant continentales que marines. L’emprise géographique des saisies couvre la France métropolitaine et l’Outre-mer. Les données peuvent être opportunistes aussi bien que protocolées en fonction des utilisateurs, et peuvent disposer de champs complémentaires propres à chaque jeu de données. L'outil CardObs a été mis en place en 2007 par le Service du Patrimoine Naturel du MNHN. Il est actuellement géré par PatriNat (OFB, MNHN, CNRS, IRD).
DOI: 10.1594/pangaea.63585
title: Occurrence of mammalia relicts at site Castlepook Cave
DOI: 10.15468/39swao
title: Plateforme AUVERGNE-DREAL Auvergne-DREAL Auvergne - Autres - 2015

description: Jeux de données opportunistes et protocolés traitant de divers groupes taxonomiques
DOI: 10.1594/pangaea.64597
title: Occurrence of mammalia relicts at site Burgtonna
DOI: 10.15468/dl.w59khb
title: Occurrence Download

description: A dataset containing 198 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus floribunda Lindl. ex A.Camus"
 ]
}

 The dataset includes 198 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035475-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.64605
title: Occurrence of mammalia relicts at site Igrita Cave
DOI: 10.1594/pangaea.63534
title: Occurrence of mammalia relicts at site Weinberghöhlen/Mauern
DOI: 10.1594/pangaea.64595
title: Occurrence of mammalia relicts at site Nikolaushöhle
DOI: 10.1594/pangaea.64601
title: Occurrence of mammalia relicts at site Pestera Magura
DOI: 10.1594/pangaea.64231
title: Occurrence of mammalia relicts at site Sirgenstein
DOI: 10.15468/dmwgyz
title: Xanthichthys greenei
, a new species of triggerfish (
  Balistidae
) from the Line Islands

description: Xanthichthys greenei sp. n. is described from six specimens, 97-154 mm standard length (SL)  collected from mesophotic coral ecosystems (90-100 m) at Kiritimati (Christmas Island), Line Islands, part of the Republic of Kiribati in the Central Pacific. Of the six species of Xanthichthys, it is most similar to the Atlantic X. ringens and the Indo-West Pacific X. lineopunctatus, sharing with these species the character of three pigmented cheek grooves. It is distinctive in its low body scale row count (33-35, other Xanthichthys species with 39 or more), small size (maximum SL 154 mm, other species over 225 mm), and color pattern of scattered dark spots sub-dorsally and no other spots or lines on body.
DOI: 10.15468/stpl20
title: CERMES Barbados Lionfish Sightings 2012

description: The first confirmed sighting of a lionfish in Barbados was in November, 2011. Throughout 2012, persons were encouraged to report sightings of lionfish. Where possible, sightings were confirmed by way of the fish being captured and handed over to the relevant persons for confirmation. In addition to confirmation, biological data (such as lengths, weigh, sex and maturity) were also collected.
DOI: 10.1594/pangaea.123391
title: Sarcodine counts and carbon biomass at station TT012_5-TM28
DOI: 10.1594/pangaea.63621
title: Occurrence of mammalia relicts at site Brillenhöhle
DOI: 10.48597/m636-9nhy
title: Measurement of Ozone at Ispra

description: Measurement of Ozone at Ispra
DOI: 10.1594/pangaea.63601
title: Occurrence of mammalia relicts at site Rislisberghöhle
DOI: 10.1594/pangaea.806085
title: Succession of benthic hard-bottom communities abundance at station Errina2012_IS_solar1
DOI: 10.15468/fkjwn2
title: BUND Naturschutzzentrum St. Julian

description: This dataset holds the observations recorded during the GEO Biodiversity Day "BUND Naturschutzzentrum St. Julian" in St Julian
DOI: 10.1594/pangaea.251266
title: Benthic foraminifera abundance of Hole 96-624

description: Relative abundance: D = dominant, A = abundant, C = common, F = few, R = rare, T = trace, P = present (numerical values are abundance in percent)
DOI: 10.15468/slcv6u
title: Insect (JNHM-IN)

description: Jeju Folklore and Natural History Museum Insect Resources
DOI: 10.1594/pangaea.769660
title: (Table 2a) Abundance of macrobenthos species in samples from Cruise AMK54 stations in the Novaya Zemlya Trough
DOI: 10.1594/pangaea.64613
title: Occurrence of mammalia relicts at site Pestera la Adam
DOI: 10.15468/dl.4ccuoc
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006849-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.745720
title: Macrobenthos in surface sediments off Sylt collected during HEINCKE cruise HE255

description: Sample area: 0.02 m**2
DOI: 10.15468/dl.97w63p
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus baloot Griff."
 ]
}

 The dataset includes 133 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035476-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.721898
title: Distribution of Quinqueloculina sp. in sediment core 13077-019
DOI: 10.15468/dl.rerunh
title: Occurrence Download

description: A dataset containing 27845878 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Actinopterygii"
 ]
}

 The dataset includes 27845878 records from 2295 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006832-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3su82m
title: Occurrence Download

description: A dataset containing 325 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chaetostoma dorsale Eigenmann, 1922"
 ]
}

 The dataset includes 325 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044434-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j854gu
title: Occurrence Download

description: A dataset containing 548 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((115.77172 19.01123,106.91235 4.38912,107.12328 -5.5121,117.45922 -10.316,133.27953 -8.8601,138.55297 6.27925,126.3186 21.38659,115.77172 19.01123))",
 "HasGeospatialIssue is false",
 "TaxonKey is Conus magus Linnaeus, 1758"
 ]
}

 The dataset includes 548 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046261-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24414/rob-gnss-zelz00bel
title: GNSS data of ZELZ00BEL, Zelzate, Belgium

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.15468/dl.joleok
title: Occurrence Download

description: A dataset containing 444 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptoglossus clypealis Heidemann, 1910"
 ]
}

 The dataset includes 444 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002495-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.24414/rob-gnss-zel100bel
title: GNSS data of ZEL100BEL, Zelzate, Belgium

description: Permanent GNSS station dataset as daily RINEX files
DOI: 10.15468/dl.nuc3dn
title: Occurrence Download

description: A dataset containing 17115 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Spain",
 "Geometry POLYGON((-6.36329 39.58266,3.31566 39.58266,3.31566 43.46083,-6.36329 43.46083,-6.36329 39.58266))",
 "HasCoordinate is true",
 "TaxonKey is Pinus sylvestris L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17115 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031336-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ns3hwx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vitex agnus-castus L.",
 "Country is Mexico",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000246-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g76p27
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aeschynomene soniae G.P.Lewis",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 19 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044882-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cldizx
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Belloa radians (Benth.) Sagást. & M.O.Dillon"
 ]
}

 The dataset includes 22 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000246-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ddg683
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Microprius Fairmaire, 1868",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0209308-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29s8bx
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tagetes laxa Cabrera"
 ]
}

 The dataset includes 60 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039226-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dz7a3a
title: Occurrence Download

description: A dataset containing 106256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is International Barcode of Life project (iBOL)",
 "Geometry POLYGON((-15.48965 35.45824,-30.20481 37.53336,-32.27009 11.55426,-17.55493 -34.79842,59.89328 -38.92746,68.28193 -10.85015,62.47489 19.99235,59.72719 24.07006,55.8663 26.55316,53.69743 24.99906,49.05053 28.45692,44.6618 37.32836,36.18307 36.55818,32.45954 32.54824,26.61648 32.77738,20.31513 34.83964,14.17329 33.9587,13.06229 36.99758,8.22622 38.46801,-2.36971 36.27176,-5.36808 36.01015,-6.64654 35.77325,-11.31485 35.7171,-15.48965 35.45824))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 106256 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0056960-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10257571
title: Antigen-specific CD4+ T cells exhibit distinct transcriptional phenotypes in the lymph node and blood following vaccination in humans

description: Abstract: SARS-CoV-2 infection and mRNA vaccination induce robust CD4+ T cell responses that are critical for the development of protective immunity. Here, we evaluated spike-specific CD4+ T cells in the blood and draining lymph node (dLN) of human subjects following BNT162b2 mRNA vaccination using single-cell transcriptomics. We analyze multiple spike-specific CD4+ T cell clonotypes, including novel clonotypes we define here using Trex, a new deep learning-based reverse epitope mapping method integrating single-cell T cell receptor (TCR) sequencing and transcriptomics to predict antigen-specificity. Human dLN spike-specific T follicular helper cells (TFH) exhibited distinct phenotypes, including germinal center (GC)-TFH and IL-10+ TFH, that varied over time during the GC response. Paired TCR clonotype analysis revealed tissue-specific segregation of circulating and dLN clonotypes, despite numerous spike-specific clonotypes in each compartment. Analysis of a separate SARS-CoV-2 infection cohort revealed circulating spike-specific CD4+ T cell profiles distinct from those found following BNT162b2 vaccination. Our findings provide an atlas of human antigen-specific CD4+ T cell transcriptional phenotypes in the dLN and blood following vaccination or infection.

More Information:



Preprint: Research Square.

Sample information: data_inventory.csv file.

Code code_github_repo.zip or at the original github repo

Interactive Portal: CellPilot
DOI: 10.5281/zenodo.10257572
title: Antigen-specific CD4+ T cells exhibit distinct transcriptional phenotypes in the lymph node and blood following vaccination in humans

description: Abstract: SARS-CoV-2 infection and mRNA vaccination induce robust CD4+ T cell responses that are critical for the development of protective immunity. Here, we evaluated spike-specific CD4+ T cells in the blood and draining lymph node (dLN) of human subjects following BNT162b2 mRNA vaccination using single-cell transcriptomics. We analyze multiple spike-specific CD4+ T cell clonotypes, including novel clonotypes we define here using Trex, a new deep learning-based reverse epitope mapping method integrating single-cell T cell receptor (TCR) sequencing and transcriptomics to predict antigen-specificity. Human dLN spike-specific T follicular helper cells (TFH) exhibited distinct phenotypes, including germinal center (GC)-TFH and IL-10+ TFH, that varied over time during the GC response. Paired TCR clonotype analysis revealed tissue-specific segregation of circulating and dLN clonotypes, despite numerous spike-specific clonotypes in each compartment. Analysis of a separate SARS-CoV-2 infection cohort revealed circulating spike-specific CD4+ T cell profiles distinct from those found following BNT162b2 vaccination. Our findings provide an atlas of human antigen-specific CD4+ T cell transcriptional phenotypes in the dLN and blood following vaccination or infection.
More Information:The preprint is with the analysis of the data is available at Research Square.Sample information is available in the data_inventory.csv file.
DOI: 10.5281/zenodo.11395445
title: Antigen-specific CD4+ T cells exhibit distinct transcriptional phenotypes in the lymph node and blood following vaccination in humans

description: Abstract: SARS-CoV-2 infection and mRNA vaccination induce robust CD4+ T cell responses that are critical for the development of protective immunity. Here, we evaluated spike-specific CD4+ T cells in the blood and draining lymph node (dLN) of human subjects following BNT162b2 mRNA vaccination using single-cell transcriptomics. We analyze multiple spike-specific CD4+ T cell clonotypes, including novel clonotypes we define here using Trex, a new deep learning-based reverse epitope mapping method integrating single-cell T cell receptor (TCR) sequencing and transcriptomics to predict antigen-specificity. Human dLN spike-specific T follicular helper cells (TFH) exhibited distinct phenotypes, including germinal center (GC)-TFH and IL-10+ TFH, that varied over time during the GC response. Paired TCR clonotype analysis revealed tissue-specific segregation of circulating and dLN clonotypes, despite numerous spike-specific clonotypes in each compartment. Analysis of a separate SARS-CoV-2 infection cohort revealed circulating spike-specific CD4+ T cell profiles distinct from those found following BNT162b2 vaccination. Our findings provide an atlas of human antigen-specific CD4+ T cell transcriptional phenotypes in the dLN and blood following vaccination or infection.

More Information:



Preprint: Research Square.

Sample information: data_inventory.csv file.

Code code_github_repo.zip or at the original github repo

Interactive Portal: CellPilot
DOI: 10.15468/dl.8h88vf
title: Occurrence Download

description: A dataset containing 82755 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "Year 1995-2020",
 "TaxonKey is Pavo cristatus Linnaeus, 1758"
 ]
}

 The dataset includes 82755 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060178-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8uvj7
title: Occurrence Download

description: A dataset containing 7955 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gomphocarpus fruticosus (L.) W.T.Aiton"
 ]
}

 The dataset includes 7955 records from 221 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063267-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kz7b54
title: Occurrence Download

description: A dataset containing 1801648 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "TaxonKey is Fabaceae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1801648 records from 136 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060642-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.