cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7848791
title: KuramBio 2012_Lebensspuren and benthic fauna area data

description: Lebensspuren data genrated by the random selection of 50 frames per station of the KuramBio 2012 expedition (8 stations analyzed; the depth of the stations ranged from 4,868 m to 5,768 m). In these 400 frames, the area of 5,692 lebensspuren was measured and the lebensspuren were classified. Additionally, megabenthic fauna was quantified and classified as "faunal coverage" at each station, which was the area covered by all individual megabenthic organisms. This "faunal coverage" area is based on the measurements of 4,009 individual animals. Environmental variables: content of grain fractions (%Sand, %Silt/Clay), organic carbon in the sediment (total weight (wt%) of the sediment), and chlorophyll-α concentrations (Chl.-α, μg/g) were obtained from previously published data on the studied stations (Sattarova and Artemova, 2015; Schmidt et al., 2019). 
description: The research was funded by a Humboldt Postdoctoral Fellowship from the Humboldt Foundation.
DOI: 10.5281/zenodo.7848792
title: KuramBio 2012_Lebensspuren and benthic fauna area data

description: Lebensspuren data genrated by the random selection of 50 frames per station of the KuramBio 2012 expedition (8 stations analyzed; the depth of the stations ranged from 4,868 m to 5,768 m). In these 400 frames, the area of 5,692 lebensspuren was measured and the lebensspuren were classified. Additionally, megabenthic fauna was quantified and classified as "faunal coverage" at each station, which was the area covered by all individual megabenthic organisms. This "faunal coverage" area is based on the measurements of 4,009 individual animals. Environmental variables: content of grain fractions (%Sand, %Silt/Clay), organic carbon in the sediment (total weight (wt%) of the sediment), and chlorophyll-α concentrations (Chl.-α, μg/g) were obtained from previously published data on the studied stations (Sattarova and Artemova, 2015; Schmidt et al., 2019). 
description: The research was funded by a Humboldt Postdoctoral Fellowship from the Humboldt Foundation.
DOI: 10.5517/ccdc.csd.cc2720v6
title: CCDC 2057527: Experimental Crystal Structure Determination

description: Related Article: Chao Fan, Jianchao Chen, Zhongkai Xu, Peng Yin, Chengjun Wu, Tiemin Sun|2024|J.Mol.Struct.|1297|136901|doi:10.1016/j.molstruc.2023.136901
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.10207247
title: Protein Condensate Atlas from predictive models of heteromolecular condensate composition
DOI: 10.5281/zenodo.10207248
title: Protein Condensate Atlas from predictive models of heteromolecular condensate composition
DOI: 10.7910/dvn/gi8aux
title: Replication Data for: Locality as a safe haven: place-based resentment and political trust in local and national institutions

description: Replication material for a forthcoming article "Locality as a safe haven: place-based resentment and political trust in local and national institutions" in Journal of European Public Policy.
DOI: 10.6084/m9.figshare.24638207
title: Terrestrial dataset from Contrasting Terrestrial and marine ecospace dynamics after the end-triassic mass extinction event

description: Full terrestrial occurrence dataset with relevant PBDB information and ecospace trait assignments made by the authors
DOI: 10.5281/zenodo.5018165
title: Astronaut Analysis

description: This analysis is based on publicly available astronauts data from Wikidata. In this context, we investigated aspects such as time humans spent in space as well as the age distribution of the astronauts.


Please note that this data publication is used as an example to teach researchers how to make research code ready for citation in a scientific publication.
DOI: 10.5281/zenodo.5018166
title: Astronaut Analysis

description: This analysis is based on publicly available astronauts data from Wikidata. In this context, we investigated aspects such as time humans spent in space as well as the age distribution of the astronauts.


Please note that this data publication is used as an example to teach researchers how to make research code ready for citation in a scientific publication.
DOI: 10.6084/m9.figshare.22731339
title: A customized 3D-printed histological microgrinder for the study of metallic endoprostheses

description: Use of histology is the key when evaluation of bone and soft tissue integration of any implanted metallic prosthesis is required. This relies on the ability to prepare very thin sections by grinding down resin embedded samples. Manual grinding has historically been used with variable success, and thus, a number of commercial microgrinders have been previously marketed, however, at a significant cost. The following describes a practical method to 3D print and build a microgrinder construct retrofitted to a metallurgic wheel grinder/polisher previously available. The design files are also supplied, which allow one to implement customized modifications for virtually all types of wheel grinders/polishers circumventing the need to procure highly costly appliances. Recommendations are included on how to safely and reproducibly prepare microscopic sections using the described construct.
DOI: 10.6084/m9.figshare.22731339.v1
title: A customized 3D-printed histological microgrinder for the study of metallic endoprostheses

description: Use of histology is the key when evaluation of bone and soft tissue integration of any implanted metallic prosthesis is required. This relies on the ability to prepare very thin sections by grinding down resin embedded samples. Manual grinding has historically been used with variable success, and thus, a number of commercial microgrinders have been previously marketed, however, at a significant cost. The following describes a practical method to 3D print and build a microgrinder construct retrofitted to a metallurgic wheel grinder/polisher previously available. The design files are also supplied, which allow one to implement customized modifications for virtually all types of wheel grinders/polishers circumventing the need to procure highly costly appliances. Recommendations are included on how to safely and reproducibly prepare microscopic sections using the described construct.
DOI: 10.5281/zenodo.10209862
title: Fusion of Single and Integral Multispectral Aerial Images

description: We present a novel hybrid (model- and learning-based) architecture for fusing the most significant features from conventional aerial images and integral aerial images that result from synthetic aperture sensing for removing occlusion caused by dense vegetation. It combines the environment's spatial references with features of unoccuded targets. Our method out-beats the state-of-the-art, does not require manually tuned parameters, can be extended to an arbitrary number and combinations of spectral channels, and is reconfigurable to address different use-cases.
DOI: 10.5281/zenodo.10209861
title: Fusion of Single and Integral Multispectral Aerial Images

description: We present a novel hybrid (model- and learning-based) architecture for fusing the most significant features from conventional aerial images and integral aerial images that result from synthetic aperture sensing for removing occlusion caused by dense vegetation. It combines the environment's spatial references with features of unoccuded targets. Our method out-beats the state-of-the-art, does not require manually tuned parameters, can be extended to an arbitrary number and combinations of spectral channels, and is reconfigurable to address different use-cases.
DOI: 10.6084/m9.figshare.24637986
title: AON single-unit data

description: Single-unit spike data associated with the paper titled "Oxytocin induces the formation of distinctive cortical representations and cognitions biased towards familiar mice." by David Wolf, Renée Hartig, Yi Zhuo, Max F. Scheller, Mirko Articus, Marcel Moor, Valery Grinevich, Christiane Linster, Eleonora Russo, Wolfgang Weber-Fahr, Jonathan R. Reinwald and Wolfgang Kelsch.The following repository contains code to reproduce the main figures and results from the deposited datasets: https://github.com/KelschLAB/OXT-Wolf.
DOI: 10.34740/kaggle/dsv/7064851
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5281/zenodo.8182878
title: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.8182879
title: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.8182886
title: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8182887
title: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eElab_micelle_40SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8182892
title: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.8182893
title: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.8183723
title: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8183724
title: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8182894
title: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8182895
title: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3

description: eElab_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica3
DOI: 10.5281/zenodo.8183715
title: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.8183716
title: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2

description: eYqjD_micelle_50SDS_CHARMM_310K_Na_Neut_OPC_replica2
DOI: 10.5281/zenodo.10137240
title: T helper cells exhibit a dynamic and reversible 3'UTR landscape.

description: This archive contains large files necessary to reproduce the related paper analysis.
DOI: 10.5281/zenodo.10137241
title: T helper cells exhibit a dynamic and reversible 3'UTR landscape.

description: This archive contains large files necessary to reproduce the related paper analysis.
DOI: 10.5281/zenodo.8281244
title: The Stokes-Einstein-Sutherland equation at the nanoscale revisited

description: This dataset contains simulation input files, experimental raw data and all processed data underlying the figures of the corresponding journal article. A comprehensive description of the presented data is compiled in the "README.txt" file.
description: We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) through Project-ID 416229255 – SFB 1411 Design of Particulate Products (subprojects A01, C04 and D01) – and project INST 90-1123-1 FUGG. We gratefully acknowledge the scientific support and HPC resources provided by the Erlangen National High Performance Computing Center (NHR@FAU) of the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU). The hardware is funded by the DFG.
DOI: 10.5281/zenodo.8335310
title: The Stokes-Einstein-Sutherland equation at the nanoscale revisited

description: This dataset contains simulation input files, experimental raw data and all processed data underlying the figures of the corresponding journal article. A comprehensive description of the presented data is compiled in the "README.txt" file.
description: We acknowledge funding by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) through Project-ID 416229255 – SFB 1411 Design of Particulate Products (subprojects A01, C04 and D01) – and project INST 90-1123-1 FUGG. We gratefully acknowledge the scientific support and HPC resources provided by the Erlangen National High Performance Computing Center (NHR@FAU) of the Friedrich-Alexander-Universität Erlangen-Nürnberg (FAU). The hardware is funded by the DFG.
DOI: 10.5281/zenodo.10209660
title: 3D simulations of TRAPPIST-1e with varying CO2, CH4 and haze profiles [dataset]

description: Dataset of 3D simulations of TRAPPIST-1e with varying CO2, CH4 and haze profiles
 
Using a 3D General Circulation Model, the Unified Model, we present results from simulations of a tidally locked TRAPPIST-1e with varying CO2 and CH4 gas concentrations, and their corresponding prescribed spherical haze profiles. Our results show that the presence of CO2 leads to a warmer atmosphere globally due to its greenhouse effect, with the increase of surface temperature on the day side surface up to ∼14.1 K, and on the night side up to ∼21.2 K. The presence of CH4 can lead to a peak in the change of surface temperature on the day side due to the balance of tropospheric warming and stratospheric cooling. A thin layer of haze, formed when CH4/CO2 = 0.1, leads to a day side warming of ∼4.9 K due to a change in the water vapour and cloud distribution. The haze reaches an optical threshold thickness when CH4/CO2 ∼0.4 beyond which the day side mean surface temperature does not vary much. The planet is more favourable to habitability (surface temperature above 273.15 K) when pCO2 is high, pCH4 is low and the haze layer is thin. The effect of CO2, CH4 and haze on the day side is similar to that for a rapidly-rotating planet. On the contrary, their effect on the night side depends on the wind structure and the wind speed in the simulation.
DOI: 10.5281/zenodo.10209661
title: 3D simulations of TRAPPIST-1e with varying CO2, CH4 and haze profiles [dataset]

description: Dataset of 3D simulations of TRAPPIST-1e with varying CO2, CH4 and haze profiles
 
Using a 3D General Circulation Model, the Unified Model, we present results from simulations of a tidally locked TRAPPIST-1e with varying CO2 and CH4 gas concentrations, and their corresponding prescribed spherical haze profiles. Our results show that the presence of CO2 leads to a warmer atmosphere globally due to its greenhouse effect, with the increase of surface temperature on the day side surface up to ∼14.1 K, and on the night side up to ∼21.2 K. The presence of CH4 can lead to a peak in the change of surface temperature on the day side due to the balance of tropospheric warming and stratospheric cooling. A thin layer of haze, formed when CH4/CO2 = 0.1, leads to a day side warming of ∼4.9 K due to a change in the water vapour and cloud distribution. The haze reaches an optical threshold thickness when CH4/CO2 ∼0.4 beyond which the day side mean surface temperature does not vary much. The planet is more favourable to habitability (surface temperature above 273.15 K) when pCO2 is high, pCH4 is low and the haze layer is thin. The effect of CO2, CH4 and haze on the day side is similar to that for a rapidly-rotating planet. On the contrary, their effect on the night side depends on the wind structure and the wind speed in the simulation.
DOI: 10.25405/data.ncl.24516718
title: Wind Speed & Power Generated Dataset For Floating Offshore 7 MW and 15 MW Turbine

description: Example data for wind speed and wind power generated for a simulated 7 MW floating offshore wind turbine (2 days) and a 15 MW turbine (6 hours). Used in Ocean refuel review article upcoming publication.Power generated can be used to test the dynamic operation of water electrolysers for performance and degradationColumn 1 = Time (s)Column 2 = Wind Velocity (m/s)Column 3 = Power Generated (MW)<br>
DOI: 10.25919/6d44-y759
title: Parkes observations for project P1219 semester 2023OCTS_03

description: The magnetic field potentially regulates the process of star formation and the evolution of molecular clouds. It is inherently difficult to measure interstellar magnetic field strengths, with the measurement of Zeeman splitting a unique method to estimate the magnetic field strength along the line of sight directly. Despite the detection of Zeeman splitting in other mediums, there are as yet no Zeeman detections against compact background sources in quiescent molecular clouds or the cold neutral medium. Pulsars with extremely small solid angles and relatively high transverse velocities are ideal background sources to study the magnetic field in molecular clouds, providing a distinct signal to measure splitting against. There are four pulsars with OH absorption detections, namely PSR B1849+00, B1641-45, B1718-35, and B1749-28. We propose to utilize these four pulsars to explore the properties of the magnetic field and its variations within molecular clouds through both the Zeeman splitting of OH absorption and rotation measure estimations, between epochs. If a detection is confirmed, it will open a new window on the hard-to-measure magnetic fields in molecular clouds, independent of interpretation, thus shedding light on the physics of star formation and the interstellar medium.
DOI: 10.17028/rd.lboro.24615570
title: Paired visual fine sediment (&lt;2mm) data and macroinvertebrate samples from Australia, Brazil, New Zealand and UK

description: Data provided represents harmonized macroinvertebrate data collected from 3-minute kick and Surber (in the case of some New Zealand data) samples paired with visual fine sediment (&lt;2mm) data at the reach scale. Data is provided for Australia, Brazil, New Zealand and UK from secondary data providers, listed in the Data Source Summaries document.Article abstractExcessive fine sediment (particles &lt;2 mm) deposition in freshwater systems is a pervasive stressor worldwide. However, understanding of ecological response to excess fine sediment in river systems at the global scale is limited. Here, we aim to address whether there is a consistent response to increasing levels of deposited fine sediment by freshwater invertebrates across multiple geographic regions (Australia, Brazil, New Zealand, and the UK). Results indicate ecological responses are not globally consistent and are instead dependent on both the region and the facet of invertebrate diversity considered, i.e., taxonomic or functional trait structure. Invertebrate communities of Australia were most sensitive to deposited fine sediment, with the greatest rate of change in communities occurring when fine sediment cover was low (below 25% of the reach). Communities in the UK displayed greater tolerance with most compositional change occurring between 30-60% cover. In both New Zealand and Brazil, which included the most heavily sedimented sampled streams, the communities were more tolerant or demonstrated ambiguous responses, likely due to historic environmental filtering of invertebrate communities. We conclude that ecological responses to fine sediment are not generalisable globally and are dependent on landscape filters with regional context and historic land management playing important roles.© the authors, CC-BY-NC 4.0
DOI: 10.17028/rd.lboro.24615570.v1
title: Paired visual fine sediment (&lt;2mm) data and macroinvertebrate samples from Australia, Brazil, New Zealand and UK

description: Data provided represents harmonized macroinvertebrate data collected from 3-minute kick and Surber (in the case of some New Zealand data) samples paired with visual fine sediment (&lt;2mm) data at the reach scale. Data is provided for Australia, Brazil, New Zealand and UK from secondary data providers, listed in the Data Source Summaries document.Article abstractExcessive fine sediment (particles &lt;2 mm) deposition in freshwater systems is a pervasive stressor worldwide. However, understanding of ecological response to excess fine sediment in river systems at the global scale is limited. Here, we aim to address whether there is a consistent response to increasing levels of deposited fine sediment by freshwater invertebrates across multiple geographic regions (Australia, Brazil, New Zealand, and the UK). Results indicate ecological responses are not globally consistent and are instead dependent on both the region and the facet of invertebrate diversity considered, i.e., taxonomic or functional trait structure. Invertebrate communities of Australia were most sensitive to deposited fine sediment, with the greatest rate of change in communities occurring when fine sediment cover was low (below 25% of the reach). Communities in the UK displayed greater tolerance with most compositional change occurring between 30-60% cover. In both New Zealand and Brazil, which included the most heavily sedimented sampled streams, the communities were more tolerant or demonstrated ambiguous responses, likely due to historic environmental filtering of invertebrate communities. We conclude that ecological responses to fine sediment are not generalisable globally and are dependent on landscape filters with regional context and historic land management playing important roles.© the authors, CC-BY-NC 4.0
DOI: 10.5522/04/24624243
title: WEISS Catheter Segmentation in Fluoroscopy Dataset

description: This dataset contains fluoroscopy images extracted from four videos of canulation experiments with an aorta phantom and six videos of in-vivo catheterisation procedures: four Transcatheter Aortic Valve Implantations (TAVI) and two diagnostic catheterisation procedures. Please refer to the README.docxThe Phantom.hdf5 file contains the 2000 (Dataset-2 in the paper) images extracted from the four fluoroscopy videos from catheterization experiments carried out on a silicon aorta phantom in an angiography suite.The T1T2.hdf5 and T3-T6.hdf5 files contain images extracted from the six fluoroscopy videos during in-vivo endovascular operations (Dataset-3 in the paper). Specifically, 836 frames were extracted from TAVI (data groups T1, T2, T3 andT4) and 371 from diagnostic catheterization (data groups T5 andT6). Each data group contains the following number of images: T1 – 286, T2 – 150, T3 – 200, T4 – 200, T5 – 143, T6 – 228.Binary segmentation masks of the interventional catheter are provided as ground truth. A semiautomated tracking method with manual initialisation (http://ieeexplore.ieee.org/document/7381624/) was employed to obtain the catheter annotations as the 2D coordinates of the catheter restricted to a manually selected region of interest (ROI). The method employs a b-spline tube model as a prior for the catheter shape to restrict the search space and deal with potential missing measurements. This is combined with a probabilistic framework that estimates the pixel-wise posteriors between the foreground (catheter) and background delimited by the b-spline tube contour. The output of the algorithm was manually checked and corrected to provide the final catheter segmentation.The annotations are provided in the files: “Phantom_label.hdf5”, “T1T2_label.hdf5” and “T3-T6_label.hdf5”. All annotations consist of full-scale (256x256 px) binary masks where background pixels have a “0” value, while a value equal to “1” denotes the catheter pixels.Example python code (MAIN.py) is provided to access the data and the labels and visualize them.Citing the datasetThe dataset should be cited using its DOI whenever research making use of this dataset is reported in any academic publication or research report. Please also cite the following publication:<br>Marta Gherardini, Evangelos Mazomenos, Arianna Menciassi, Danail Stoyanov, “Catheter segmentation in X-ray fluoroscopy using synthetic data and transfer learning with light U-nets”, Computer Methods and Programs in Biomedicine, Volume 192, Aug 2020, 105420, doi:10.1016/j.cmpb.2020.105420.To find out more about our research team, visit the Surgical Robot Vision and Wellcome/EPSRC Centre for Interventional and Surgical Science websites.