cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20443812.v1
title: Cloning, expression and antifungal effect of the recombinant chitinase from Streptomyces sampsonii KJ40

description: ABSTRACT: Streptomyces sampsonii is a kind of biocontrol bacterium with antifungal effects, and chitinase is one of the main antifungal substances. To improve and further study the structure and function of the chitinase gene of S. sampsonii, we amplified the target fragment by PCR, ligated the fragment to the expression vector pET-32a, introduced the resulting plasmid into Escherichia coli BL21 (DE3) and induced expression of the chitinase. Then, the recombinant chitinase was purified by is-labelled protein micro purification kit. A chitinase gene, Sschi61, was cloned from the genome and expressed in a prokaryote. The antifungal effect of the recombinant protein was also studied. Finally, the chitinase gene Sschi61 with a length of 1755 bp was obtained, and the expression of the 82 kDa recombinant chitinase was induced in E. coli by IPTG. The recombinant chitinase could inhibit the black spot pathogen of Eucommia ulmoides (Pestalotiopsis trachicarpicola). After the hyphae of the pathogen of black spot of Eucommia ulmoides (Pestalotiopsis trachicarpicola) were soaked with recombinant chitinase, the hyphae cells expanded, broke, and dissolved.
DOI: 10.6084/m9.figshare.20443815
title: The midday sun reveals what the waters hide: Podocnemis unifilis Troschel, 1848 (Testudines, Podocnemididae), another exotic species in the Pantanal of Mato Grosso state

description: Abstract The process of exotic species introduction is recognized as one of the greatest threats to the ecology and economy of the planet, due to changes in interactions in native biological communities. In this sense, reporting bioinvasions is the first step to understanding its introduction process and creating strategies to mitigate possible socio-environmental damages. Here we report the first records of Podocnemis unifilis introduced in the Northern Pantanal, Mato Grosso, Brazil. We obtained the species’ first records occasionally during 2014 and 2015. In the following years from 2016 to 2019, we carried out systematic observations through nautical incursions on the Paraguay River, between the Sepotuba River mouth and the Taiamã Ecological Station (TES). We also included third part records, when it was possible to prove the species identification and registration sites. Podocnemis unifilis adults, hatchling and nests were recorded at different points along the Paraguay River. Our results indicate that P. unifilis was introduced close to the urban nucleus of Cáceres about 30 years ago. Currently, it has an established population, recording nests and hatchling for years in a row. A particular one is its occurrence at the TES, an important natural fish nursery and refuge for the wetland fauna. Thus, continuous monitoring is suggested from P.unifilis, since the Pantanal’s environment with several different aquatic environments, offers favorable conditions for the species population increase in the Northern Pantanal.
DOI: 10.6084/m9.figshare.20443815.v1
title: The midday sun reveals what the waters hide: Podocnemis unifilis Troschel, 1848 (Testudines, Podocnemididae), another exotic species in the Pantanal of Mato Grosso state

description: Abstract The process of exotic species introduction is recognized as one of the greatest threats to the ecology and economy of the planet, due to changes in interactions in native biological communities. In this sense, reporting bioinvasions is the first step to understanding its introduction process and creating strategies to mitigate possible socio-environmental damages. Here we report the first records of Podocnemis unifilis introduced in the Northern Pantanal, Mato Grosso, Brazil. We obtained the species’ first records occasionally during 2014 and 2015. In the following years from 2016 to 2019, we carried out systematic observations through nautical incursions on the Paraguay River, between the Sepotuba River mouth and the Taiamã Ecological Station (TES). We also included third part records, when it was possible to prove the species identification and registration sites. Podocnemis unifilis adults, hatchling and nests were recorded at different points along the Paraguay River. Our results indicate that P. unifilis was introduced close to the urban nucleus of Cáceres about 30 years ago. Currently, it has an established population, recording nests and hatchling for years in a row. A particular one is its occurrence at the TES, an important natural fish nursery and refuge for the wetland fauna. Thus, continuous monitoring is suggested from P.unifilis, since the Pantanal’s environment with several different aquatic environments, offers favorable conditions for the species population increase in the Northern Pantanal.
DOI: 10.6084/m9.figshare.20443811
title: Can the Serum Endocan Level Be Used as a Biomarker to Predict Subclinical Atherosclerosis in Patients with Prediabetes?

description: Abstract Background Patients with prediabetes have an increased risk of atherosclerotic cardiovascular disease; therefore, early detection is important. Objective The present study aimed to reveal the usability of serum endocan levels as a biomarker in the diagnosis of subclinical atherosclerosis in patients with prediabetes, based on CIMT measurements. Methods Participants were classified according to the presence (n=42) or absence (n=42) of prediabetes. Serum endocan, fasting blood sugar, fasting insulin, and glycated hemoglobin (HbA1c) values of patients were examined, and CIMT was measured. The level of significance for statistical analysis was 0.05. Results While serum endocan levels were found to be lower in patients with prediabetes, when compared to the control group (p=0.042), CIMT values were found to be higher (p=0.046). When evaluated by multivariate regression analysis, the serum endocan level was found to be associated with CIMT, regardless of other parameters (p=0.007). A negative correlation was found between plasma fasting insulin and endocan levels (r=-0.320, p=0.001). Conclusions Carotid intima media thickness was found to be high and the serum endocan level was low in patients with prediabetes. Decreased serum endocan levels in patients with prediabetes may be a contributing factor to atherosclerosis formation mechanisms.
DOI: 10.6084/m9.figshare.20443811.v1
title: Can the Serum Endocan Level Be Used as a Biomarker to Predict Subclinical Atherosclerosis in Patients with Prediabetes?

description: Abstract Background Patients with prediabetes have an increased risk of atherosclerotic cardiovascular disease; therefore, early detection is important. Objective The present study aimed to reveal the usability of serum endocan levels as a biomarker in the diagnosis of subclinical atherosclerosis in patients with prediabetes, based on CIMT measurements. Methods Participants were classified according to the presence (n=42) or absence (n=42) of prediabetes. Serum endocan, fasting blood sugar, fasting insulin, and glycated hemoglobin (HbA1c) values of patients were examined, and CIMT was measured. The level of significance for statistical analysis was 0.05. Results While serum endocan levels were found to be lower in patients with prediabetes, when compared to the control group (p=0.042), CIMT values were found to be higher (p=0.046). When evaluated by multivariate regression analysis, the serum endocan level was found to be associated with CIMT, regardless of other parameters (p=0.007). A negative correlation was found between plasma fasting insulin and endocan levels (r=-0.320, p=0.001). Conclusions Carotid intima media thickness was found to be high and the serum endocan level was low in patients with prediabetes. Decreased serum endocan levels in patients with prediabetes may be a contributing factor to atherosclerosis formation mechanisms.
DOI: 10.5281/zenodo.6983991
title: Mapping Phyllosilicates on the Asteroid Bennu Using Thermal Emission Spectra and Machine Learning Model Applications Datasets

description: We provide laboratory spectra of pure minerals and mineral mixtures and the corresponding metadata. Derived from the laboratory data, we include the PLS model through coefficients. Through the application of the model, we provide the prediction values in volume% for Mg-rich serpentine, cronstedtite, and saponite for the BBD1, EQ3, and TAG datasets.
DOI: 10.6084/m9.figshare.20443832
title: Analysis of antepartum cardiotocography based on S/k proportions and probability in 20 minutes

description: Abstract Objectives: although mortality and perinatal asphyxia in newborns have been considerably reduced, there are still deficiencies in screening and diagnosis methods for intrapartum fetal well being that aim to detect its early alterations. Therefore, the purpose of this research was to apply a methodology based on probability and entropy and confirm its capacity to detect normal and abnormal fetal cardiac dynamics from 20-minute cardiotocographic tracings. Methods: 80 cardiotocographic tracings of pregnant women in the last trimester were collected, of which the minimum and maximum fetal heart rate were evaluated every 10 seconds, as well as its repetitions along with their probability and the diagnostic S/k ratio. Finally, the statistical analysis was carried out to establish the diagnostic capacity of the method concerning the clinical evaluation and interpretation of the cardiotocographic tracing, taken as the Gold Standard. Results: it was confirmed that S/k ratio values differentiated normal from abnormal fetal cardiac dynamics with sensitivity and specificity values of 100% and a Kappa coefficient of 1. Conclusion: the applicability of a diagnostic mathematical method of cardiotocography was confirmed, which suggests its implementation in the clinical context to detect alterations in fetal well-being in 20 minutes.
DOI: 10.6084/m9.figshare.20443832.v1
title: Analysis of antepartum cardiotocography based on S/k proportions and probability in 20 minutes

description: Abstract Objectives: although mortality and perinatal asphyxia in newborns have been considerably reduced, there are still deficiencies in screening and diagnosis methods for intrapartum fetal well being that aim to detect its early alterations. Therefore, the purpose of this research was to apply a methodology based on probability and entropy and confirm its capacity to detect normal and abnormal fetal cardiac dynamics from 20-minute cardiotocographic tracings. Methods: 80 cardiotocographic tracings of pregnant women in the last trimester were collected, of which the minimum and maximum fetal heart rate were evaluated every 10 seconds, as well as its repetitions along with their probability and the diagnostic S/k ratio. Finally, the statistical analysis was carried out to establish the diagnostic capacity of the method concerning the clinical evaluation and interpretation of the cardiotocographic tracing, taken as the Gold Standard. Results: it was confirmed that S/k ratio values differentiated normal from abnormal fetal cardiac dynamics with sensitivity and specificity values of 100% and a Kappa coefficient of 1. Conclusion: the applicability of a diagnostic mathematical method of cardiotocography was confirmed, which suggests its implementation in the clinical context to detect alterations in fetal well-being in 20 minutes.
DOI: 10.6084/m9.figshare.20443833
title: Serological and Molecular Study of the Duffy Blood Group among Malarial Endemic Region Residents in Brazil

description: ABSTRACT Background: The atypical chemokine receptor 1 (ACKR1) gene encodes the Duffy blood group antigens in two allelic forms: FY*A (FY*01) and FY*B (FY*02), which define the Fy(a+b-), Fy(a-b+), and Fy(a+b+) phenotypes. FY*BES (FY*02N.01) is a single T to C substitution at nucleotide -67 that prevents the FY*B from being expressed in red blood cells (RBCs). Methods: We evaluated 250 residents from a Brazilian malarial endemic region (RsMR). All individuals were phenotyped for Fya and Fyb antigens and genotyped for FY*A, FY*B, FY*B SE , and FY*B weak alleles. Results: Among the 250 individuals, 209 (83.6%) reported previous malaria infection, and 41 (16.4%) did not. The Fy(a+b+) phenotype was present in 97/250 (38.8%), while the Fy(a-b-) was present in 7/250 (2.8%). The FY*A/FY*B was found in 130/250 (52%) and the FY*A/FY*A in 45/250 (18%). The c.1-67&gt;TC was present, in homozygosity, in 11/250 (4.4%). Among 34 individuals with the Fy(a+b-) and FYA*/FYB* mutations, 4/34 (11.8%) had homozygosity for the c.1-67T&gt;C. One individual presented the Fy(a+b-), FY*A/FY*B, and c.1-67T&gt;C in homozygosis, whereas the other presented the Fy(a+b-), FY*A/FY*A, and c.1-67T&gt;C in heterozygosis. Conclusions: We reported a low prevalence of the Fy(a-b-) in persons who had previously been infected with Plasmodium vivax (67.5%). We observed that 102/141 (72.3%) individuals expressing the Fyb antigen had a P. vivax infection, indicating the importance of the Fyb antigen, silenced by a c.1-67T&gt;C mutation in homozygosis, in preventing the P. vivax infection. We showed that the c.1-67T&gt;C mutation in the FY*A did not silence the FY*A expression on RBCs.
DOI: 10.6084/m9.figshare.20443833.v1
title: Serological and Molecular Study of the Duffy Blood Group among Malarial Endemic Region Residents in Brazil

description: ABSTRACT Background: The atypical chemokine receptor 1 (ACKR1) gene encodes the Duffy blood group antigens in two allelic forms: FY*A (FY*01) and FY*B (FY*02), which define the Fy(a+b-), Fy(a-b+), and Fy(a+b+) phenotypes. FY*BES (FY*02N.01) is a single T to C substitution at nucleotide -67 that prevents the FY*B from being expressed in red blood cells (RBCs). Methods: We evaluated 250 residents from a Brazilian malarial endemic region (RsMR). All individuals were phenotyped for Fya and Fyb antigens and genotyped for FY*A, FY*B, FY*B SE , and FY*B weak alleles. Results: Among the 250 individuals, 209 (83.6%) reported previous malaria infection, and 41 (16.4%) did not. The Fy(a+b+) phenotype was present in 97/250 (38.8%), while the Fy(a-b-) was present in 7/250 (2.8%). The FY*A/FY*B was found in 130/250 (52%) and the FY*A/FY*A in 45/250 (18%). The c.1-67&gt;TC was present, in homozygosity, in 11/250 (4.4%). Among 34 individuals with the Fy(a+b-) and FYA*/FYB* mutations, 4/34 (11.8%) had homozygosity for the c.1-67T&gt;C. One individual presented the Fy(a+b-), FY*A/FY*B, and c.1-67T&gt;C in homozygosis, whereas the other presented the Fy(a+b-), FY*A/FY*A, and c.1-67T&gt;C in heterozygosis. Conclusions: We reported a low prevalence of the Fy(a-b-) in persons who had previously been infected with Plasmodium vivax (67.5%). We observed that 102/141 (72.3%) individuals expressing the Fyb antigen had a P. vivax infection, indicating the importance of the Fyb antigen, silenced by a c.1-67T&gt;C mutation in homozygosis, in preventing the P. vivax infection. We showed that the c.1-67T&gt;C mutation in the FY*A did not silence the FY*A expression on RBCs.
DOI: 10.5281/zenodo.6984023
title: Gridded crop straw fire emissions based on FINN database

description: This database provides the global gridded (0.25 * 0.25 degree) crop straw fire emissions for carbon dioxide and black carbon from 2012 to 2020 in a monthly temporal resolution. The emission data are derived from the Fire INventory from NCAR (FINN). The FINN fire emissions are available at: https://www.acom.ucar.edu/Data/fire/.
DOI: 10.5281/zenodo.6984022
title: Gridded crop straw fire emissions based on FINN database

description: This database provides the global gridded (0.25 * 0.25 degree) crop straw fire emissions for carbon dioxide and black carbon from 2012 to 2020 in a monthly temporal resolution. The emission data are derived from the Fire INventory from NCAR (FINN). The FINN fire emissions are available at: https://www.acom.ucar.edu/Data/fire/.
DOI: 10.6084/m9.figshare.20443826
title: Acute Effects of Energy Drink on Autonomic and Cardiovascular Parameters Recovery in Individuals with Different Cardiorespiratory Fitness: A Randomized, Crossover, Double-Blind and Placebo-Controlled Trial

description: Abstract Background It has been suggested that the consumption of energy drinks (ED) may affect cardiovascular activity. Objectives to investigate the acute effects of ED intake on heart rate variability (HRV) and cardiovascular recovery after moderate aerobic exercise in males with different cardiorespiratory capacities. Methods This is a randomized, double-blind, crossover, placebo-controlled study. Twenty-eight young adults were split into two groups according to their peak oxygen consumption (VO2peak) values: (1) High VO2 peak (HO) - VO2 peak &gt; 52.15 mL/kg/min, and (2) low VO2 peak (LO) - peak VO2 &lt;52.15 mL/kg/min. Subjects of both groups underwent two exercise protocols in randomized order: moderate aerobic exercise (60% of VO2peak) following the intake of 250 mL of water (placebo protocol) or 250 mL of ED (ED protocol). During the exercise tests, values of cardiorespiratory and HRV parameters were recorded. Results Significant differences were observed for the LF (normalized units) index between rest and Rec1 in HO energy and LO groups during the ED protocol. For the LF/HF ratio, significant differences were seen between rest and Rec1 in HO and LO during ED protocols. Conclusion Acute ED intake delayed heart rate recovery after exercise in subjects with low and high cardiorespiratory fitness.
DOI: 10.6084/m9.figshare.20443826.v1
title: Acute Effects of Energy Drink on Autonomic and Cardiovascular Parameters Recovery in Individuals with Different Cardiorespiratory Fitness: A Randomized, Crossover, Double-Blind and Placebo-Controlled Trial

description: Abstract Background It has been suggested that the consumption of energy drinks (ED) may affect cardiovascular activity. Objectives to investigate the acute effects of ED intake on heart rate variability (HRV) and cardiovascular recovery after moderate aerobic exercise in males with different cardiorespiratory capacities. Methods This is a randomized, double-blind, crossover, placebo-controlled study. Twenty-eight young adults were split into two groups according to their peak oxygen consumption (VO2peak) values: (1) High VO2 peak (HO) - VO2 peak &gt; 52.15 mL/kg/min, and (2) low VO2 peak (LO) - peak VO2 &lt;52.15 mL/kg/min. Subjects of both groups underwent two exercise protocols in randomized order: moderate aerobic exercise (60% of VO2peak) following the intake of 250 mL of water (placebo protocol) or 250 mL of ED (ED protocol). During the exercise tests, values of cardiorespiratory and HRV parameters were recorded. Results Significant differences were observed for the LF (normalized units) index between rest and Rec1 in HO energy and LO groups during the ED protocol. For the LF/HF ratio, significant differences were seen between rest and Rec1 in HO and LO during ED protocols. Conclusion Acute ED intake delayed heart rate recovery after exercise in subjects with low and high cardiorespiratory fitness.
DOI: 10.6084/m9.figshare.20443839
title: Impact of a computer system as a triage tool in the management of pulmonary tuberculosis in a HIV reference center in Brazil

description: ABSTRACT Background: The Neural Clinical Score for tuberculosis (NCS-TB) is a computer system developed to improve the triage of presumed pulmonary TB (pPTB). Methods: A study was performed with cohorts of pPTB patients cared for at a reference hospital in Northeast Brazil. Results: The NCS-TB sensitivity was 76.5% for TB diagnosis, which shortened the time from triage to smear microscopy results (3.3 to 2.5 days; p&lt;0.001) and therapy initiation (6.7 to 4.1 days; p=0.045). Conclusions: Although the NCS-TB was not suitable as a screening tool, it was able to optimize laboratory diagnosis and shorten the time to treatment initiation.
DOI: 10.6084/m9.figshare.20443839.v1
title: Impact of a computer system as a triage tool in the management of pulmonary tuberculosis in a HIV reference center in Brazil

description: ABSTRACT Background: The Neural Clinical Score for tuberculosis (NCS-TB) is a computer system developed to improve the triage of presumed pulmonary TB (pPTB). Methods: A study was performed with cohorts of pPTB patients cared for at a reference hospital in Northeast Brazil. Results: The NCS-TB sensitivity was 76.5% for TB diagnosis, which shortened the time from triage to smear microscopy results (3.3 to 2.5 days; p&lt;0.001) and therapy initiation (6.7 to 4.1 days; p=0.045). Conclusions: Although the NCS-TB was not suitable as a screening tool, it was able to optimize laboratory diagnosis and shorten the time to treatment initiation.
DOI: 10.6084/m9.figshare.20443842
title: Molecular characterization of nontuberculous Mycobacteria in a tuberculosis and HIV reference unit in the State of Amazonas, Brazil

description: ABSTRACT Background: In recent years, the prevalence of nontuberculous mycobacterial (NTM) infections has increased in different regions of the world. The American Thoracic Society (ATS) recommends standardized identification criteria, reinforcing the need for faster and less complicated clinical and laboratory techniques. Methods: In this retrospective study, NTM species isolated from pulmonary, extrapulmonary, and disseminated samples from patients treated at a TB/HIV reference unit in the State of Amazonas from 2011 to 2014 were identified through a combination of molecular techniques. Results: To identify the molecular technique, 50 cryopreserved NTM cultures were recovered and subcultivated in culture medium. The potentially pathogenic NTM species identified were M. avium, M. intracellulare, M. kansasii, M. chelonae, M. abscessus, M. fortuitum, and M. peregrinum. Results of GenoType® showed moderate agreement with those of genomic sequencing (kappa = 0.60), whereas the results obtained by the PRA-hsp65 technique disagreed with the results obtained by sequencing (kappa = 0.49). Conclusions: Our findings highlight that GenoType CM is a good method for the identification of NTM, as well as the need for the application of standardized criteria, such as those set forth by the ATS.
DOI: 10.6084/m9.figshare.20443842.v1
title: Molecular characterization of nontuberculous Mycobacteria in a tuberculosis and HIV reference unit in the State of Amazonas, Brazil

description: ABSTRACT Background: In recent years, the prevalence of nontuberculous mycobacterial (NTM) infections has increased in different regions of the world. The American Thoracic Society (ATS) recommends standardized identification criteria, reinforcing the need for faster and less complicated clinical and laboratory techniques. Methods: In this retrospective study, NTM species isolated from pulmonary, extrapulmonary, and disseminated samples from patients treated at a TB/HIV reference unit in the State of Amazonas from 2011 to 2014 were identified through a combination of molecular techniques. Results: To identify the molecular technique, 50 cryopreserved NTM cultures were recovered and subcultivated in culture medium. The potentially pathogenic NTM species identified were M. avium, M. intracellulare, M. kansasii, M. chelonae, M. abscessus, M. fortuitum, and M. peregrinum. Results of GenoType® showed moderate agreement with those of genomic sequencing (kappa = 0.60), whereas the results obtained by the PRA-hsp65 technique disagreed with the results obtained by sequencing (kappa = 0.49). Conclusions: Our findings highlight that GenoType CM is a good method for the identification of NTM, as well as the need for the application of standardized criteria, such as those set forth by the ATS.