cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1618807.v3
title: A systematic review of stress measurement methods, sample size, study environment, and single or conspecific housing in studies on the domestic cat

description: This systematic review looks at studies which measured stress in domestic cats, and serves to highlight commonalities, differences, and gaps in sample size, sample location, solitary or conspecific housing and types of stress measurements in these studies. A search of the literature was conducted on November 30, 2015 using Web of Science and following the PRISMA flow diagram criteria (http://www.prisma-statement.org/PRISMAStatement/FlowDiagram.aspx). The keywords used were "cat OR cats", "fel*", "behavio$r" and "stress" and keywords excluded were "mice", "mouse", and "rat*" which resulted in 88 articles. These articles were then screened to assess their relevance to the review topic, by selecting only articles conforming to two criteria: 1) the domestic cat was the subject of study, and 2) stress in cats was measured in at least one way as part of the study methods. Thirty-five of the original articles conformed to the criteria, and data was extracted from these articles in 5 categories: type of stress measurement, details of stress measurement, sample size, study environment, and single or group housing. This data was then analyzed for trends and presented within the final review paper.
DOI: 10.6084/m9.figshare.1618803.v1
title: 2014PSociusDataTOTALS.csv

description: Data associated with Leighton and Vander Meiden (2016)
DOI: 10.6084/m9.figshare.1618807.v2
title: A systematic review of stress measurement methods, sample size, study environment, and single or conspecific housing in studies on the domestic cat

description: This systematic review looks at studies which measured stress in domestic cats, and serves to highlight commonalities, differences, and gaps in sample size, sample location, solitary or conspecific housing and types of stress measurements in these studies. A search of the literature was conducted on November 30, 2015 using Web of Science and following the PRISMA flow diagram criteria (http://www.prisma-statement.org/PRISMAStatement/FlowDiagram.aspx). The keywords used were "cat OR cats", "fel*", "behavio$r" and "stress" and keywords excluded were "mice", "mouse", and "rat*" which resulted in 88 articles. These articles were then screened to assess their relevance to the review topic, by selecting only articles conforming to two criteria: 1) the domestic cat was the subject of study, and 2) stress in cats was measured in at least one way as part of the study methods. Thirty-five of the original articles conformed to the criteria, and data was extracted from these articles in 5 categories: type of stress measurement, details of stress measurement, sample size, study environment, and single or group housing. This data was then analyzed for trends and presented within the final review paper.
DOI: 10.6084/m9.figshare.1618710
title: Gino Ballantyne's Artivity phase 2 data

description: This is the output from Gino Ballantyne's work during testing software for the second phase of Artivity. It is exported from Openlink Virtuoso as N/triples.
DOI: 10.6084/m9.figshare.1618694
title: Postmarketing surveillance of the safety and effectiveness of abatacept in Japanese patients with rheumatoid arthritis

description: <b>Objective:</b> To perform a postmarketing surveillance study evaluating the safety and effectiveness of abatacept in Japanese patients with rheumatoid arthritis (RA).<b>Methods:</b> Safety and effectiveness data were collected for all RA patients (at 772 sites) treated with intravenous abatacept between September 2010 and June 2011. Patients were treated by the approved dosing regimen according to the package insert. Treatment effectiveness was evaluated at baseline and at weeks 4, 12, and 24 using Disease Activity Score (DAS) 28 according to erythrocyte sedimentation rate or serum C-reactive protein concentrations.<b>Results:</b> Overall, 3,882 and 3,016 abatacept-naïve RA patients were included in safety and effectiveness analyses, respectively. Adverse drug reactions (ADRs) were reported for 15.66% of patients and serious ADRs were detected for 2.52% of patients. The incidence of serious infections was 1.03% and these were mainly attributed to different types of bacterial pneumonia. Disease activity improved significantly over 6 months. Separate multivariate analysis identified predictors of severe ADR, and severe infections and factors predictive of clinically meaningful DAS28 improvement after 6 months of treatment with abatacept.<b>Conclusions:</b> Abatacept was efficacious and well tolerated in a clinical setting. No new safety concerns were detected.
DOI: 10.6084/m9.figshare.1618694.v1
title: Postmarketing surveillance of the safety and effectiveness of abatacept in Japanese patients with rheumatoid arthritis

description: <b>Objective:</b> To perform a postmarketing surveillance study evaluating the safety and effectiveness of abatacept in Japanese patients with rheumatoid arthritis (RA).<b>Methods:</b> Safety and effectiveness data were collected for all RA patients (at 772 sites) treated with intravenous abatacept between September 2010 and June 2011. Patients were treated by the approved dosing regimen according to the package insert. Treatment effectiveness was evaluated at baseline and at weeks 4, 12, and 24 using Disease Activity Score (DAS) 28 according to erythrocyte sedimentation rate or serum C-reactive protein concentrations.<b>Results:</b> Overall, 3,882 and 3,016 abatacept-naïve RA patients were included in safety and effectiveness analyses, respectively. Adverse drug reactions (ADRs) were reported for 15.66% of patients and serious ADRs were detected for 2.52% of patients. The incidence of serious infections was 1.03% and these were mainly attributed to different types of bacterial pneumonia. Disease activity improved significantly over 6 months. Separate multivariate analysis identified predictors of severe ADR, and severe infections and factors predictive of clinically meaningful DAS28 improvement after 6 months of treatment with abatacept.<b>Conclusions:</b> Abatacept was efficacious and well tolerated in a clinical setting. No new safety concerns were detected.
DOI: 10.6084/m9.figshare.1618690
title: Sound files for The wolf spider Pardosa milvina detects predator threat level using only vibratory cues

description: Sound files Predators may inadvertently signal their presence and threat level by way of signals in multiple modalities. We used a spider, <em>Pardosa milvina</em>, known to respond adaptively to chemotactile predator cues (i.e., silk, faeces and other excreta) to evaluate whether it could also discriminate predation risk from isolated vibratory cues. Vibrations from its prey, conspecifics, and predators (<em>Tigrosa helluo</em> and <em>Scarites quadriceps</em>) were recorded and played back to <em>Pardosa</em>. In addition, we recorded predator vibrations with and without access to chemotactile cues from <em>Pardosa</em>, indicating the presence of prey. <em>Pardosa</em> did not appear to discriminate between vibrations from prey or conspecifics, but the response to predators depended on the presence of cues from <em>Pardosa</em>. Vibrations from predators with access to chemotactile cues from prey induced reductions in <em>Pardosa</em> activity. Predator cues typically occur in multiple modalities, but prey are capable of imperfectly evaluating predation risk using a limited subset of information.
DOI: 10.6084/m9.figshare.1618680
title: Figshare - Plant Pathogens (Data and metadata)

description: Systematic Review In looking for the most recent information on plant pathogen impacts on succession, a systematic review was done using JSTOR online in November 2015. The year of the publications varied from 1950 to 2015. The key words used to search for the journal articles were ‘pathogens’, ‘trade-offs’, ‘succession’, ‘root defence’, ‘negative feedback’, ‘resistance’, ‘community’, ‘species coexistence’, ‘competition’, and ‘disturbance’. Topics that were not related to plant pathogen effects on succession were excluded from the review such as ‘seed predation’ and ‘herbivory’. There were 102 studies that came up in the search results that showed relevance to the topic. Reading the abstracts and organizing the articles based on three categories then filtered out subsets of these 102 studies: pathogen effects, succession, and defence/resistance. Any other supplementary information on interspecific competition and resource partitioning was found using Google Scholar and reviewed to meet the criteria. A final count of 35 studies was selected for this systematic review based upon data that was valid to the topic. Studies that did not discuss the effects of pathogens on plant communities or explain theory related to plant community dynamics were excluded from the review. Articles that did not perform tests on resistance or trade-offs during plant-pathogen interactions were also excluded. Most of the studies were published between the years of 1990 to the late 2000s. And majority of the experiments were done in North America or Australia. Publication companies that produced the most number of articles in the review were Journal of Ecology and Ecology Letters. Data Analysis The studies were organized on a regional level by counting what country the study took place in, then sorting each study out based on the continent that each country belongs to. The studies were also reviewed for the type of experimental method used and separated based on the category of pathogen that was observed. Studies that looked at different stages of succession were also organized based on how old the ecosystem being tested was. A table was created based on a list of defensive traits expressed by a plants root system and the source was listed beside it. All defensive traits that had anything to do with herbivory were not included in the review.
DOI: 10.6084/m9.figshare.1618690.v1
title: Sound files for The wolf spider Pardosa milvina detects predator threat level using only vibratory cues

description: Sound files Predators may inadvertently signal their presence and threat level by way of signals in multiple modalities. We used a spider, <em>Pardosa milvina</em>, known to respond adaptively to chemotactile predator cues (i.e., silk, faeces and other excreta) to evaluate whether it could also discriminate predation risk from isolated vibratory cues. Vibrations from its prey, conspecifics, and predators (<em>Tigrosa helluo</em> and <em>Scarites quadriceps</em>) were recorded and played back to <em>Pardosa</em>. In addition, we recorded predator vibrations with and without access to chemotactile cues from <em>Pardosa</em>, indicating the presence of prey. <em>Pardosa</em> did not appear to discriminate between vibrations from prey or conspecifics, but the response to predators depended on the presence of cues from <em>Pardosa</em>. Vibrations from predators with access to chemotactile cues from prey induced reductions in <em>Pardosa</em> activity. Predator cues typically occur in multiple modalities, but prey are capable of imperfectly evaluating predation risk using a limited subset of information.
DOI: 10.6084/m9.figshare.1618679
title: Preventing weight gain; HeLP-her

description: Baseline and 1 year outcome dataset
DOI: 10.6084/m9.figshare.1618680.v1
title: Figshare - Plant Pathogens (Data and metadata)

description: Systematic Review In looking for the most recent information on plant pathogen impacts on succession, a systematic review was done using JSTOR online in November 2015. The year of the publications varied from 1950 to 2015. The key words used to search for the journal articles were ‘pathogens’, ‘trade-offs’, ‘succession’, ‘root defence’, ‘negative feedback’, ‘resistance’, ‘community’, ‘species coexistence’, ‘competition’, and ‘disturbance’. Topics that were not related to plant pathogen effects on succession were excluded from the review such as ‘seed predation’ and ‘herbivory’. There were 102 studies that came up in the search results that showed relevance to the topic. Reading the abstracts and organizing the articles based on three categories then filtered out subsets of these 102 studies: pathogen effects, succession, and defence/resistance. Any other supplementary information on interspecific competition and resource partitioning was found using Google Scholar and reviewed to meet the criteria. A final count of 35 studies was selected for this systematic review based upon data that was valid to the topic. Studies that did not discuss the effects of pathogens on plant communities or explain theory related to plant community dynamics were excluded from the review. Articles that did not perform tests on resistance or trade-offs during plant-pathogen interactions were also excluded. Most of the studies were published between the years of 1990 to the late 2000s. And majority of the experiments were done in North America or Australia. Publication companies that produced the most number of articles in the review were Journal of Ecology and Ecology Letters. Data Analysis The studies were organized on a regional level by counting what country the study took place in, then sorting each study out based on the continent that each country belongs to. The studies were also reviewed for the type of experimental method used and separated based on the category of pathogen that was observed. Studies that looked at different stages of succession were also organized based on how old the ecosystem being tested was. A table was created based on a list of defensive traits expressed by a plants root system and the source was listed beside it. All defensive traits that had anything to do with herbivory were not included in the review.
DOI: 10.6084/m9.figshare.1618663
title: Campitelli-Macbeth-Ospina-Marmolejo_Ramos data and scripts

description: The fileset contains the data and R scripts for the paper by Campitelli-Macbeth-Ospina-Marmolejo_Ramos
DOI: 10.6084/m9.figshare.1618666
title: US Daily Poll 2008-2012

description: This is the Gallup/Healthways US Daily Poll 2008-2012 used in the paper "How was the Weekend? How the Social Context Underlies Weekend Effects in Happiness and other Emotions for US Workers" published on PLOS ONE. The permission of use for this paper is granted by the Gallup Inc.
DOI: 10.6084/m9.figshare.1618656
title: Eucalyptus camaldulensis (Dehnh.) seedling survival, height and sediment salinity dataset

description: In September 2006 (austral spring), 480 seedlings of E. camaldulensis were planted in 24 plots on the banks of six ephemeral creeks, three of which were artificially flooded for 6–8 wk. Managed flooding was engineered by pumping water from the river into dry anabranch creeks that were dammed at their entrances using levee banks. Maximum flood depth among plots ranged from 0.4–0.7 m.<br>Two pairs of browsed and unbrowsed (1  2 m) plots were established along each creek. Browsing treatments (browsed or unbrowsed) were allocated randomly within each pair of plots, with all mammal herbivores being excluded by 1.3 m high steel fencing, with wire netting (3 cm mesh) attached.<br>One-year-old seedlings, grown from seed collected from a Murray River floodplain with similar climate and hydrological conditions (ca 80 km downstream from the study area), were obtained from a commercial nursery. Twenty seedlings were planted 40 cm apart in each plot. Seedling survival and height were measured eight times (spanning two austral summers) between October 2006 and June 2008 (0, 61, 151, 182, 273, 365, 578 and 609 d after planting).<br>In the austral spring of 2007, we collected three sediment cores from each plot at 20-30 cm below the surface, which corresponded to the lower seedling root zone. Sediment salinity was estimated by measuring electrical conductivity from the sediment samples using the 1:5 sediment/water paste extraction method (Rayment & Higginson 1992).
DOI: 10.6084/m9.figshare.1618663.v1
title: Campitelli-Macbeth-Ospina-Marmolejo_Ramos data and scripts

description: The fileset contains the data and R scripts for the paper by Campitelli-Macbeth-Ospina-Marmolejo_Ramos
DOI: 10.6084/m9.figshare.1618656.v1
title: Tree seedling survival and sediment salinity dataset

description: In September 2006 (austral spring), 480 seedlings of E. camaldulensis were planted in 24 plots on the banks of six ephemeral creeks, three of which were artificially flooded for 6–8 wk. Managed flooding was engineered by pumping water from the river into dry anabranch creeks that were dammed at their entrances using levee banks. Maximum flood depth among plots ranged from 0.4–0.7 m.<br>Two pairs of browsed and unbrowsed (1  2 m) plots were established along each creek. Browsing treatments (browsed or unbrowsed) were allocated randomly within each pair of plots, with all mammal herbivores being excluded by 1.3 m high steel fencing, with wire netting (3 cm mesh) attached.<br>One-year-old seedlings, grown from seed collected from a Murray River floodplain with similar climate and hydrological conditions (ca 80 km downstream from the study area), were obtained from a commercial nursery. Twenty seedlings were planted 40 cm apart in each plot. Seedling survival and height were measured eight times (spanning two austral summers) between October 2006 and June 2008 (0, 61, 151, 182, 273, 365, 578 and 609 d after planting).<br>In the austral spring of 2007, we collected three sediment cores from each plot at 20-30 cm below the surface, which corresponded to the lower seedling root zone. Sediment salinity was estimated by measuring electrical conductivity from the sediment samples using the 1:5 sediment/water paste extraction method (Rayment & Higginson 1992).
DOI: 10.6084/m9.figshare.1618599
title: Cellular aggregation in <i>Chlamydomonas</i> (Chlorophyceae) is chimaeric and depends on traits like cell size and motility

description: ABSTRACTHow the variation in phenotypic traits like cell size and motility impacts predator-induced cellular aggregation is not known. Furthermore the genetic composition of cell groups in mixed populations of <i>Chlamydomonas</i> has not been investigated. An examination of these two questions will not only enhance our understanding of <i>Chlamydomonas</i> ecology, but also shed light on the primordial steps before integrated multicellular groups were established. Group living comes with viability and reproductive costs and it is not known how these are shared if groups are genetically heterogeneous. We observed that the natural predator <i>Peranema trichophorum</i> (Euglenoidea) induced clumping in <i>Chlamydomonas</i>. When co-cultured with <i>P. trichophorum</i> cells protected themselves by forming facultative groups (reverting back to a unicellular lifestyle once predators were removed). The dynamics of group formation in different <i>Chlamydomonas</i> species and strains correlated with cell size and swimming speed. Small or less motile strains aggregated more readily than large, fast-swimming ones. Interestingly, <i>Chlamydomonas</i> groups were both intra-species and inter-species chimaeric. This suggests that the predator-induced group formation in <i>Chlamydomonas</i> involved cells coming together rather than staying together and during aggregation cells showed little or no discrimination between self and non-self. These data demonstrate that the dynamics of cell aggregation, in unicellular volvocines at least, depends on phenotypic traits like cell size and motility and high genetic relatedness is not mandatory at this initial stage. These findings further our understanding of aggregation in mixed <i>Chlamydomonas</i> populations and have implications for understanding the very first steps on the road to simple multicellularity.
DOI: 10.6084/m9.figshare.1618663.v2
title: Campitelli-Macbeth-Ospina-Marmolejo_Ramos data and scripts

description: The fileset contains the data and R scripts for the paper by Campitelli-Macbeth-Ospina-Marmolejo_Ramos
DOI: 10.6084/m9.figshare.1618295
title: Tabla 4.10 Frecuencias absolutas códigos grupo 2

description: Frecuencias absolutas códigos grupo 2Acosta-Silva, D. A. (2016, April 18). <i>La sensitividad cognitiva: hacia un modelo de su funcionamiento</i>. Tesis doctoral para optar al título de Doctor en Ciencias Sociales, Niñez y Juventud. Centro de Estudios Avanzados en Niñez y Juventud (Cinde), Universidad de Manizales http://doi.org/10.17605/OSF.IO/TZPF6
DOI: 10.6084/m9.figshare.1618663.v4
title: Campitelli-Macbeth-Ospina-Marmolejo_Ramos data and scripts

description: The fileset contains the data and R scripts for the paper by Campitelli-Macbeth-Ospina-Marmolejo_Ramos
DOI: 10.6084/m9.figshare.1618599.v1
title: Cellular aggregation in <i>Chlamydomonas</i> (Chlorophyceae) is chimaeric and depends on traits like cell size and motility

description: ABSTRACTHow the variation in phenotypic traits like cell size and motility impacts predator-induced cellular aggregation is not known. Furthermore the genetic composition of cell groups in mixed populations of <i>Chlamydomonas</i> has not been investigated. An examination of these two questions will not only enhance our understanding of <i>Chlamydomonas</i> ecology, but also shed light on the primordial steps before integrated multicellular groups were established. Group living comes with viability and reproductive costs and it is not known how these are shared if groups are genetically heterogeneous. We observed that the natural predator <i>Peranema trichophorum</i> (Euglenoidea) induced clumping in <i>Chlamydomonas</i>. When co-cultured with <i>P. trichophorum</i> cells protected themselves by forming facultative groups (reverting back to a unicellular lifestyle once predators were removed). The dynamics of group formation in different <i>Chlamydomonas</i> species and strains correlated with cell size and swimming speed. Small or less motile strains aggregated more readily than large, fast-swimming ones. Interestingly, <i>Chlamydomonas</i> groups were both intra-species and inter-species chimaeric. This suggests that the predator-induced group formation in <i>Chlamydomonas</i> involved cells coming together rather than staying together and during aggregation cells showed little or no discrimination between self and non-self. These data demonstrate that the dynamics of cell aggregation, in unicellular volvocines at least, depends on phenotypic traits like cell size and motility and high genetic relatedness is not mandatory at this initial stage. These findings further our understanding of aggregation in mixed <i>Chlamydomonas</i> populations and have implications for understanding the very first steps on the road to simple multicellularity.