cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5213326
title: Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study: Data and Analysis

description: These are data and analysis files from the paper "Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study". Files are in JASP format (https://jasp-stats.org).<br>Code Book to interpret variable names:<br>C means comprehension conditionV means validation conditionL4 means Line 4<br>C_NonFormDwellTimeRaw dwell time on non-formulae in comprehension condition<br>C_FormDwellTimeRaw dwell time on formulae in comprehension condition<br>C_DwellRaw_L1Raw dwell time on line 1 in comprehension condition<br>C_DwellPercent_L1Dwell time as a percentage (of all time on proofs) on line 1 in comprehension condition<br>C_MeanFixDur_L1Raw mean fixation duration on line 1 in comprehension condition<br>C_MeanFixDurPercent_L1Mean fixation duration as a proportion of individual's average on line 1 in comprehension condition<br>C_PupilRightPercent_L1Mean pupil dilation as a percentage of individuals' average on line 1 in comprehension condition<br>C_Back177183_Proportion_L1Proportion of regressive saccades or back saccades (defined as saccades with angle 177-183) on Line 1 in the comprehension condition<br>C_BetwLine-L1The number of between-line saccades that end in Line 1, in the comprehension condition.<br>C_FIrstFixTimeAsProp_L1The time of first fixation on Line 1, as a proportion of the overall reading time.
DOI: 10.6084/m9.figshare.5213326.v1
title: Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study: Data and Analysis

description: These are data and analysis files from the paper "Reading Proofs for Validation and Comprehension: An Expert-Novice Eye-Movement Study". Files are in JASP format (https://jasp-stats.org).<br>Code Book to interpret variable names:<br>C means comprehension conditionV means validation conditionL4 means Line 4<br>C_NonFormDwellTimeRaw dwell time on non-formulae in comprehension condition<br>C_FormDwellTimeRaw dwell time on formulae in comprehension condition<br>C_DwellRaw_L1Raw dwell time on line 1 in comprehension condition<br>C_DwellPercent_L1Dwell time as a percentage (of all time on proofs) on line 1 in comprehension condition<br>C_MeanFixDur_L1Raw mean fixation duration on line 1 in comprehension condition<br>C_MeanFixDurPercent_L1Mean fixation duration as a proportion of individual's average on line 1 in comprehension condition<br>C_PupilRightPercent_L1Mean pupil dilation as a percentage of individuals' average on line 1 in comprehension condition<br>C_Back177183_Proportion_L1Proportion of regressive saccades or back saccades (defined as saccades with angle 177-183) on Line 1 in the comprehension condition<br>C_BetwLine-L1The number of between-line saccades that end in Line 1, in the comprehension condition.<br>C_FIrstFixTimeAsProp_L1The time of first fixation on Line 1, as a proportion of the overall reading time.
DOI: 10.6084/m9.figshare.5213341.v1
title: Methyl Valerate Autoignition Data

description: This folder contains the volume trace information for methyl valerate ignition associated with the work "Experiments and modeling of the autoignition of methyl pentanoate at low to intermediate temperatures and elevated pressures in a rapid compression machine" by Bryan W. Weber, Justin A. Bunnell, Kamal Kumar, and Chih-Jen Sung.<br><b>Structure</b><br>The folders are structured as follows:<br>equivalence ratio/end of compression pressure/*.[csv,yaml,txt]<br>Within each folder, there are three files associated with each individual experiment. These files are:<br>*_volume.csv: The volume trace for an experiment<br>*_pressure.txt: The pressure trace for an experiment*_volume-trace.yaml: The information used to generate the volume trace, in a format suitable for use with UConnRCMPy<br>Each filename is formatted with the compressed temperature (Tc), initial pressure (P0), and initial temperature (T0), so that each experiment can be uniquely identified. In addition, the information about all of the experiments is summarized in the ignition-delays.csv file.
DOI: 10.6084/m9.figshare.5213248
title: Supplementary Table1 -Swanson.pdf

description: Microarray analysis supplementary table for Nat Comm paper Bioenergetic state regulates innate inflmmatory respones through the transcriptional co-repressor CtBP
DOI: 10.6084/m9.figshare.5213254
title: Microarray Submission data file 2-16.xls

description: Microarray data for Nat Comm paper Bioenergetic state regulates innate inflmmatory respones through the transcriptional co-repressor CtBP
DOI: 10.6084/m9.figshare.5213254.v1
title: Microarray Submission data file 2-16.xls

description: Microarray data for Nat Comm paper Bioenergetic state regulates innate inflmmatory respones through the transcriptional co-repressor CtBP
DOI: 10.17028/rd.lboro.5213227
title: Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis - dataset

description: The .zip file contains the input data, the results and the scripts used for the paper "Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis", accepted for publication in the <i>Journal of Building Performance Simulation</i>.<br>Series of random reflectance values were generated using the Method of Morris sampling strategy and were later used as input in the Climate-Based Daylight Modelling evaluations carried out with five different simulation techniques. The results from the simulations were further analysed with the Method of Morris to understand the sensitivity of the models to the selected reflectance values.<br>Input and results are all stored in .txt format. The scripts were created for the use with iPython notebooks. The 3D models of the classrooms used for this work are available for downloading from the GitHub link provided here.
DOI: 10.6084/m9.figshare.5213206
title: Plasminogen Activator Inhibitor Type-1 Tag Single-Nucleotide Polymorphisms in Patients with Diabetes Mellitus Type 2 and Diabetic Retinopathy

description: <i>Background</i>: There is accumulating evidence for genetic susceptibility to the development of diabetic retinopathy (DR). The role of plasminogen activator inhibitor-1 (PAI-1) in DR risk remains controversial. <i>Objective</i>: The present study was designed to investigate possible influence of PAI-1 gene region polymorphisms on the risk of DR and on the risk of developing DR early vs late in the course of type 2 diabetes mellitus (T2DM). <i>Methods</i>: A total of 138 patients with DR, 107 patients with T2DM without DR, and 315 healthy controls were recruited. To cover the majority of the genetic variability across the extended region of PAI-1 gene, five tag single-nucleotide polymorphisms (SNPs) from the HapMap using a pairwise approach and an <i>r</i><sup>2</sup> ≥ 0.8 and a minor allele frequency (MAF) of &gt;0.05 were identified. Using logistic regression analyses, tag SNPs and haplotypes were tested for associations with DR risk and risk of DR development early or late in the course of T2DM. The generalized odds ratio (OR<sub>G</sub>) was calculated to estimate the mutational load effect on DR development among all participants. Corrections for multiple comparisons were carried out (<i>p</i>-value &lt; 0.01). <i>Results</i>: A significant effect of rs2070682 on the risk of early DR onset was found in the codominant model of inheritance [odds ratio, OR (95% confidence interval, CI): 5.04 (1.47–17.28), <i>p</i> = 0.018]. However, this association marginally did not survive multiple testing corrections. No other significant association between PAI-1 tag-SNPs and haplotypes was revealed. Furthermore, no significant mutational load effect of PAI-1 tag SNPs on the risk of DR development in T2DM course was found. <i>Conclusions</i>: In conclusion, the present study does not provide any strong evidence that <i>PAI-1</i> gene variants are implicated in the risk of DR or the development of DR during T2DM course.
DOI: 10.6084/m9.figshare.5213248.v1
title: Supplementary Table1 -Swanson.pdf

description: Microarray analysis supplementary table for Nat Comm paper Bioenergetic state regulates innate inflmmatory respones through the transcriptional co-repressor CtBP
DOI: 10.6084/m9.figshare.5213206.v1
title: Plasminogen Activator Inhibitor Type-1 Tag Single-Nucleotide Polymorphisms in Patients with Diabetes Mellitus Type 2 and Diabetic Retinopathy

description: <i>Background</i>: There is accumulating evidence for genetic susceptibility to the development of diabetic retinopathy (DR). The role of plasminogen activator inhibitor-1 (PAI-1) in DR risk remains controversial. <i>Objective</i>: The present study was designed to investigate possible influence of PAI-1 gene region polymorphisms on the risk of DR and on the risk of developing DR early vs late in the course of type 2 diabetes mellitus (T2DM). <i>Methods</i>: A total of 138 patients with DR, 107 patients with T2DM without DR, and 315 healthy controls were recruited. To cover the majority of the genetic variability across the extended region of PAI-1 gene, five tag single-nucleotide polymorphisms (SNPs) from the HapMap using a pairwise approach and an <i>r</i><sup>2</sup> ≥ 0.8 and a minor allele frequency (MAF) of &gt;0.05 were identified. Using logistic regression analyses, tag SNPs and haplotypes were tested for associations with DR risk and risk of DR development early or late in the course of T2DM. The generalized odds ratio (OR<sub>G</sub>) was calculated to estimate the mutational load effect on DR development among all participants. Corrections for multiple comparisons were carried out (<i>p</i>-value &lt; 0.01). <i>Results</i>: A significant effect of rs2070682 on the risk of early DR onset was found in the codominant model of inheritance [odds ratio, OR (95% confidence interval, CI): 5.04 (1.47–17.28), <i>p</i> = 0.018]. However, this association marginally did not survive multiple testing corrections. No other significant association between PAI-1 tag-SNPs and haplotypes was revealed. Furthermore, no significant mutational load effect of PAI-1 tag SNPs on the risk of DR development in T2DM course was found. <i>Conclusions</i>: In conclusion, the present study does not provide any strong evidence that <i>PAI-1</i> gene variants are implicated in the risk of DR or the development of DR during T2DM course.
DOI: 10.17028/rd.lboro.5213227.v2
title: Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis - dataset

description: The .zip file contains the input data, the results and the scripts used for the paper "Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis", accepted for publication in the <i>Journal of Building Performance Simulation</i>.<br>Series of random reflectance values were generated using the Method of Morris sampling strategy and were later used as input in the Climate-Based Daylight Modelling evaluations carried out with five different simulation techniques. The results from the simulations were further analysed with the Method of Morris to understand the sensitivity of the models to the selected reflectance values.<br>Input and results are all stored in .txt format. The scripts were created for the use with iPython notebooks. The 3D models of the classrooms used for this work are available for downloading from the GitHub link provided here.
DOI: 10.17028/rd.lboro.5213227.v1
title: Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis - dataset

description: The .zip file contains the input data, the results and the scripts used for the paper "Influence of input reflectance values on climate-based daylight metrics using sensitivity analysis", accepted for publication in the <i>Journal of Building Performance Simulation</i>.<br>Series of random reflectance values were generated using the Method of Morris sampling strategy and were later used as input in the Climate-Based Daylight Modelling evaluations carried out with five different simulation techniques. The results from the simulations were further analysed with the Method of Morris to understand the sensitivity of the models to the selected reflectance values.<br>Input and results are all stored in .txt format. The scripts were created for the use with iPython notebooks. The 3D models of the classrooms used for this work are available for downloading from the GitHub link provided here.
DOI: 10.6084/m9.figshare.5213080.v1
title: The revenant: rediscovery of <i>Margaritifera homsensis</i> from Orontes drainage with remarks on its taxonomic status and conservation (Bivalvia: Margaritiferidae)

description: Since <i>Margaritifera marocana</i> (Pallary, 1918) and <i>M. laosensis</i> (Lea, 1863) were rediscovered, <i>M. homsensis</i> (Lea, 1865) remains the only pearl mussel species known solely based on old shell samples from natural history museums. This is also the last pearl mussel species, which is absent in a phylogeny of the family. Here, we aimed to provide an integrative revision of the taxonomic status of <i>M. homsensis</i> from the Orontes Basin. Using a newly collected specimen from the River Karasu, Hatay Province, southern Turkey, five gene partitions were sequenced, the cytochrome c oxidase subunit I (COI), large ribosomal subunit rRNA (16S), large ribosomal subunit rDNA (28S) and its D3 expansion segment (D3), and small ribosomal subunit rDNA (18S). The multi-gene phylogeny indicates that <i>M. homsensis</i> is a sister taxon of <i>M. auricularia</i>, but both these species are closely related to <i>M. marocana</i> by nuclear genes. The main conchological features, i.e<i>.</i>, the shell shape, teeth morphology, and mantle attachment scars, as well as Fourier shell shape analysis have not shown principal differences between <i>M. homsensis</i> and <i>M. auricularia</i>. Based on these data, we concluded that <i>M. homsensis</i> is a valid species that is most closely related to <i>M. auricularia</i>. Special conservation efforts for a population of <i>M. homsensis</i> discovered in Turkey, including the formation of a nature reserve, might contribute to the conservation of the species. Finally, an extensive search for surviving populations in Orontes drainage (southern Turkey, Lebanon, and Syria) and the Nahr-el-Kabir River (Lebanon and Syria) remains necessary to develop a transboundary conservation strategy for this unique taxon.
DOI: 10.6084/m9.figshare.5213041
title: GUPPY results: Edge differences, edgePCA, phylogenetic diversity

description: Results from guppy software:, based on the output of Phylosift (Darling et al., PeerJ 2014), a method that extracts reads matching marker genes from WGS metagenomes and use them for phylogenetic placement on the Tree of Life to estimate the abundance of taxa present in a microbiome, GUPPY produces a matrix of edge differences of placement probability mass, i.e. "the differences between proportions of phylogenetic placements on either side of each internal edge of the reference phylogenetic tree" (Matsen & Evans, PLOS One 2013). This can be used to compute phylogenetic diversity within samples (aplha diversity) and represent diversity between samples (beta diversity) using edge principal component analysis (edgePCA).Comparison of results involving 24 original samples from the Philippines and meta-analyses with extended datasets including 7 or 9 individuals from the USA are also provided in the *.datasets.* folders<br><br>Scripts used to analyse these results can be found on GitHub: https://github.com/flass/microbiomes/tree/master/scripts/phylosift<br>This work was published in the journal Molecular Ecology doi: 10.1111/mec.1443
DOI: 10.6084/m9.figshare.5212969
title: Data_Phenotypic and Molecular Characterization of Sweet Sorghum Accessions for Bioenergy Production

description: Data set for Plos One submission: <b>Phenotypic and Molecular Characterization of Sweet Sorghum Accessions for Bioenergy Production.</b><b></b><b>Phenotypic data</b> and <b>Genotypic data.</b>
DOI: 10.6084/m9.figshare.5212951
title: A multi-stakeholder portfolio optimization framework applied to stormwater best management practice (BMP) selection

description: Data and software availabilityName of softwarePareto Ant Colony Optimization Algorithm, and multi-stakeholder problem data setDevelopersMichael Di Matteo, Graeme C. Dandy, Holger R. MaierYear first available2017Hardware requiredPC/MacProgram languageFORTRANProgram size10.0 MBContact addressSchool of Civil, Environmental and Mining Engineering, University of Adelaide, Adelaide, South Australia
DOI: 10.6084/m9.figshare.5212969.v1
title: Data_Phenotypic and Molecular Characterization of Sweet Sorghum Accessions for Bioenergy Production

description: Data set for Plos One submission: <b>Phenotypic and Molecular Characterization of Sweet Sorghum Accessions for Bioenergy Production.</b><b></b><b>Phenotypic data</b> and <b>Genotypic data.</b>
DOI: 10.6084/m9.figshare.5212951.v2
title: A multi-stakeholder portfolio optimization framework applied to stormwater best management practice (BMP) selection

description: Data and software availabilityName of softwarePareto Ant Colony Optimization Algorithm, and multi-stakeholder problem data setDevelopersMichael Di Matteo, Graeme C. Dandy, Holger R. MaierYear first available2017Hardware requiredPC/MacProgram languageFORTRANProgram size10.0 MBContact addressSchool of Civil, Environmental and Mining Engineering, University of Adelaide, Adelaide, South Australia
DOI: 10.6084/m9.figshare.5212951.v1
title: A multi-stakeholder portfolio optimization framework applied to stormwater best management practice (BMP) selection

description: Data and software availabilityName of softwarePareto Ant Colony Optimization Algorithm, and multi-stakeholder problem data setDevelopersMichael Di Matteo, Graeme C. Dandy, Holger R. MaierYear first available2017Hardware requiredPC/MacProgram languageFORTRANProgram size10.0 MBContact addressSchool of Civil, Environmental and Mining Engineering, University of Adelaide, Adelaide, South Australia
DOI: 10.6084/m9.figshare.5212762
title: Table S3. Distribution records of non-constitutive mixotrophs from Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance

description: Results from bibliographic survey: Distribution records of non-constitutive mixotrophs (NCMs: GNCMs, pSNCMs, and eSNCMs).
DOI: 10.6084/m9.figshare.5212747
title: Table S4. Abundance and biomass data of the total ciliate assemblage and the relative contribution(%) of heterotrophs and mixotrophs from Oceanic protists with different forms of acquired phototrophy display contrasting biogeographies and abundance

description: Results from the bibliographic survey. Abundance and biomass data of the total ciliate assemblage and the relative contribution (%) of heterotrophs and mixotrophs (GNCMs and red-pigmented Mesodinium spp.). Period of the year (season), sampling depth (punctual or range), and type of study (fm – fluorescence microscopy or lm – light microscopy) are also given.
DOI: 10.6084/m9.figshare.5212738
title: Dataset from The origins of babytalk: smiling, teaching or social convergence?

description: Datasets used for the LME and correlational analyses.
DOI: 10.6084/m9.figshare.5212723
title: Supporting data from NMDA receptor-dependent presynaptic inhibition at the calyx of Held synapse of rat pups

description: Raw data and statistical analyses
DOI: 10.6084/m9.figshare.5212726
title: Transferring Simulation-evolved Controllers to Real Robots from Evolutionary online behaviour learning and adaptation in real robots

description: Assessment of how the highest-performing controllers found in simulation transfer to real robots, configuration of the odNEAT algorithm, and two complementary figures with behaviour-fitness maps for the aggregation task and for the adaptation experiments.
DOI: 10.6084/m9.figshare.5212720
title: Supp. Tab.1 from Ontogenetic variations and structural adjustments in mammals evolving prolonged to continuous dental growth

description: Dental measurements in Mesotheriidae and Ctenodactylidae
DOI: 10.6084/m9.figshare.5212726.v1
title: Transferring Simulation-evolved Controllers to Real Robots from Evolutionary online behaviour learning and adaptation in real robots

description: Assessment of how the highest-performing controllers found in simulation transfer to real robots, configuration of the odNEAT algorithm, and two complementary figures with behaviour-fitness maps for the aggregation task and for the adaptation experiments.
DOI: 10.6084/m9.figshare.5212723.v1
title: Supporting data from NMDA receptor-dependent presynaptic inhibition at the calyx of Held synapse of rat pups

description: Raw data and statistical analyses
DOI: 10.6084/m9.figshare.5212720.v1
title: Supp. Tab.1 from Ontogenetic variations and structural adjustments in mammals evolving prolonged to continuous dental growth

description: Dental measurements in Mesotheriidae and Ctenodactylidae
DOI: 10.6084/m9.figshare.5212633
title: S1_File.xlsx

description: A comparison of visual outcome and rotational stability of two types of toric implantable collamer lenses (TICL); V4 versus V4c
DOI: 10.6084/m9.figshare.5212618
title: atom-mac.zip

description: test2
DOI: 10.6084/m9.figshare.5212633.v1
title: S1_File.xlsx

description: A comparison of visual outcome and rotational stability of two types of toric implantable collamer lenses (TICL); V4 versus V4c
DOI: 10.6084/m9.figshare.5212603
title: Lifestyle dictionary

description: Lifestyle dictionary used for named entity recognition of lifestyle factors associated with diseases.
DOI: 10.6084/m9.figshare.5212618.v1
title: atom-mac.zip

description: test
DOI: 10.6084/m9.figshare.5212627.v2
title: Evaluación del riesgo por exposición al etanol en España

description: El etanol es una sustancia con un No Observed Adverse Effect Level (NOAEL) relativamente alto y no se encuentra en una concentración especialmente alta en las bebidas alcohólicas más consumidas, por lo que debería suponer un peligro menor. Sin embargo, se ha comprobado, por medio de numerosos estudios y estadísticas sobre los hábitos de consumo de la población, que representa un mayor riesgo del que en principio podría suponer. De este modo, un análisis exhaustivo sobre la evaluación del riesgo supone algo necesario en nuestra sociedad.
DOI: 10.6084/m9.figshare.5212492.v1
title: Human Interleukin-12 3D Print

description: PDB and STL file for human interleukin-12 3D printing.
DOI: 10.6084/m9.figshare.5212477.v1
title: Human Epidermal Growth Factor 3D Print

description: PDB and STL file for human EGF 3D printing.
DOI: 10.17608/k6.auckland.5212441
title: Straight FRP anchors dataset

description: Data set of 72 experiments
DOI: 10.6084/m9.figshare.5212447
title: Final update_Imura_et al_Perception of the average size of multiple objects in chimpanzees_data.

description: These raw data (+ supplemental data) are the results of study of "Perception of the average size of multiple object in chimpanzees (<i>Pan troglodytes</i>)".
DOI: 10.6084/m9.figshare.5212447.v1
title: Final update_Imura_et al_Perception of the average size of multiple objects in chimpanzees_data.

description: These raw data (+ supplemental data) are the results of study of "Perception of the average size of multiple object in chimpanzees (<i>Pan troglodytes</i>)".
DOI: 10.17608/k6.auckland.5212441.v1
title: Straight FRP anchors dataset

description: Data set of 72 experiments
DOI: 10.6084/m9.figshare.5212474.v1
title: Phenylalanine, Tyrosine, Threonine

description: Powerpoint presentation of the amino acids phenylalanine, tyrosine, threonine and phenylketonuria.
DOI: 10.6084/m9.figshare.5212474.v2
title: Supplementary

description: Supplementary
DOI: 10.6084/m9.figshare.5212405
title: Morphology Scores

description: The morphological scores of 7 observers for the study group of nodules
DOI: 10.6084/m9.figshare.5212402
title: Malignancy Probability Observers

description: Malignancy probability scores of the observers for the two subsets of nodules and different subsets of observers