cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21101944.v1
title: Supplementary Material for: Factors, including clinical trial eligibility, associated with induction of third-line treatment for advanced gastric cancer

description: Introduction: Third-line chemotherapy has been suggested to improve survival in patients with gastric cancer. This study aimed to identify factors associated with the induction of third-line chemotherapy for advanced gastric cancer, focusing on patient eligibility for clinical trial. Methods: We retrospectively analyzed 335 patients treated for unresectable or recurrent gastric cancer between April 2009 and May 2020. The patients were grouped into those that met the key eligibility criteria for clinical trial (136 patients, 40.6%) and those that did not (199 patients, 59.4%) before receiving first-line chemotherapy. Results: The overall survival (OS) were 16.8 months (95%CI, 14.0–19.6) and 9.3 months (95%CI, 7.8–11.0) in the eligible and ineligible group, respectively. Multivariate analyses to identify the risk factors associated with the induction of third-line chemotherapy revealed ineligibility of clinical trial (OR 1.95; 95%CI 1.15–3.31), number of metastatic sites (OR 1.99; 95%CI 1.23–3.22), low albumin concentration (OR 2.24; 95%CI 1.14–4.38) and a lack of complete or partial response to first-line treatment (OR 1.85; 95%CI 1.05–3.26). Indeed, in responders to first-line treatment for ineligible patients, the median OS was 17.7 months (95%CI, 10.6–27.9), respectively. Conclusions: Treatment outcomes were different for those eligible for clinical trials and those who were not. However, this study suggested that patients who responded to first-line treatment have more favorable prognoses when treated with salvage chemotherapy, even if they were deemed ineligible for clinical trials.
DOI: 10.6084/m9.figshare.23551896.v1
title: 20 Nwestbladi. Annotation file. GFF3. Illumina genome

description: Annotation (in format GFF3) of the genome of Nemertoderma westbladi sequenced with Illumina
DOI: 10.6084/m9.figshare.28914470.v1
title: Coarse-grained all-atom force field

description: This is the example dataset of the CGAANet code.
DOI: 10.6084/m9.figshare.29095601.v1
title: Genome annotation of <i>Magnolia amoena</i>

description: Genome of<i> Magnolia amoena </i>are sequenced and assembled for providing genetic resources and improving conservation strategies of this endangered species. The file uploaded is the annotation of the genome of <i>Magnolia amoena</i>. Genome assembly can be found in NCBI database.
DOI: 10.6084/m9.figshare.10032896.v2
title: IHB

description: The data and program used to calculate the swing equation
DOI: 10.6084/m9.figshare.7649057.v1
title: Intrinsically disordered regions mediate macromolecular assembly of the Slit diaphragm proteins associated with Nephrotic syndrome

description: The glomerular filtration barrier (GFB) of the kidney plays an instrumental role in preventing the excretion of large molecules and ensuring the formation of ultra-filtrated urine. Podocytes are essential components of GFB that provide epithelial coverage to the fine glomerular capillaries. Slit-diaphragm (SD) that forms the sole contact between adjacent foot-processes of the podocytes consists of multimeric protein assemblies. SD serves as a molecular sieve and confers size and charge-selective barrier. Nephrin, podocin, TRPC6, and CD2AP are some of the key proteins that constitute the SD. Mutations in these proteins are implicated in nephrotic syndrome and congenital nephropathies which are characterised by heavy proteinuria. The mechanism of how mutations in these proteins predispose to proteinuria is not known. Furthermore, the structural details of proteins that constitute SD are largely unknown. In this study, we built models for nephrin, CD2AP, podocin, and TRPC6 followed by docking and molecular dynamics simulations of the complex of these proteins. We speculate that the interfacial residues of SD proteins form a macromolecular complex through intrinsically disordered regions thereby conferring architectural stability to the SD, which is critical for glomerular permselectivity.
DOI: 10.17632/ybjgyz6hxz
title: Basin-scale production of hyperacidic brines is critical for the formation of high-grade and large-tonnage uranium deposits in sedimentary basins

description: Original open-source dataset of infrared hyperspectral logging data of the Athabasca Basin (Bosman and Percival, 2014; Percival et al., 2018). Use the link (https://publications.saskatchewan.ca/#/products/82130) for more information.
DOI: 10.6084/m9.figshare.28719923.v2
title: Germline deletion in Mlc2v-Cre

description: We report germline recombination induced by Mlc2v-Cre mice.
DOI: 10.17632/3bkdm53jph
title: Dataset of Normal and Abnormal Behaviour of IoT devices

description: The Internet of Things (IoT) describes the set of connected devices that are exchanging data through the Internet. IoT devices include sensors, cyber physical component, robots, and other objects that are able to collect exchange and potentially analyze data. The increasing use of Internet of Things has brought about many new risks, making these devices more favorable to hackers. Discovering and detecting compromised IoT devices is essential to reduce IoT based cyber-attacks. Thus, we performed an experiment with six common commercially available IoT devices compromised with three different ways (i.e. malware infection, vulnerability exploit, and DDOS attacks). We collected the data related to these devices before and after being compromised. The collected data is consisting of packets exchange and energy consumption.
DOI: 10.6084/m9.figshare.22302559.v1
title: NeoJaundice: Neonatal Jaundice Evaluation in Demographic Images

description: A total of 745 infants’ 2,235 images (with an average size of 567*567 ) are collected in the NeoJaundice dataset from the Xuzhou central hospital. The initial binary labels are generated using the total serum bilirubin readings extracted from the hospital's health information system with a threshold of 12.9mg/dL and then confirmed by a senior experienced pediatrician.
DOI: 10.6084/m9.figshare.23576454.v1
title: Data (.csv files) for "Genetic diversity and population structure of parasite infrapopulations within and across hosts for two trophically transmitted trematode parasites" submitted to PeerJ October 2024

description: <b>Datasets (.csv's):</b><b>all_hosts.csv</b>. This dataset contains infection abundances, date collected, date dissected, site collected, species identification, and notes on all specimens collected. It is called in the <b>Abundance_Diversity_Models_PeerJ</b> R markdown file.<b>Both_species_divdata.csv</b>. This dataset contains all of the diversity data of parasite assemblages by host specimen. It is called in the <b>Abundance_Diversity_Models_PeerJ</b> R markdown file.<br><br>
DOI: 10.6084/m9.figshare.24162438.v1
title: Traits_data_Koutsidi_2023.xlsx

description: Sheet “data”: This dataset includes six traits related to resource exploitation: size, trophic level, diet and feeding type (regarding the use of food resources), spawning period and spawning habitat (regarding spawning habitat use). Within each trait, 2–5 trait categories/modalities have been created using information on the species biology and preferences coming from the bibliography for each of the 108 species collected. A species can have non-zero values for more than one modality per trait in the dataset (to include within-species heterogeneity and allow for trait plasticity within a population). Each species has been assigned values ranging from 0 to 1 in a fashion that, within each trait, the sum of all modalities proportions equals 1. A literature search was conducted to find studies relevant to diet and spawning traits for each species in the dataset. The publications (they are cited per species × trait combination in the published dataset) were examined individually, to extract the relevant information. We grouped the retrieved data based on the limits/range of our trait categories/modalities by calculating their frequency in the respective studies and the detail of the information given there. For example, we gathered bibliography on a species spawning period among seasons: spring, summer, autumn, winter or their combination. We calculated the frequency of each season allocating it to a proportion of the categories of traits (modalities) in each study. To calculate the final proportions we calculated the average modality proportions across studies. Similarly, regarding species diet, we gathered the studies with information on food items consumed by individuals, calculated modalities frequency within the studies and then across the studies allocating them as percentages in our trait categories (e.g piscivore or zoobenthivore etc). Some information for a number of species was also obtained from FishBase or SeaLifeBase, using their literature catalogs. Thus, if e.g., there were two studies in the bibliography regarding the diet of species A and one study writes that this species is 50% piscivore and 50% zoobenthivore and the other study reports that the species is entirely (100%) piscivore, the final modality percentages were derived by averaging the percentages across studies, i.e., piscivore: 75% = 0.75, zoobenthivore: 25% = 0.25. <br> Sheet “references”: This worksheet includes one or more numbers representing a reference from which the information to fill in the trait information as data was taken. <br> Sheet “references_list”: This worksheet is a list of the reference numbers of the previous worksheet and the corresponding full references.
DOI: 10.15468/dl.2nf6f4
title: Occurrence Download

description: A dataset containing 2115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia sissoo Roxb. ex DC."
 ]
}

 The dataset includes 2115 records from 175 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013086-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/m6z98wy24x
title: Data supporting the hierarchically activated deformation mechanisms to form ultra-fine grain microstructure in carbon containing FeMnCoCr twinning induced plasticity high entropy alloy 

description: Supporting data for describing the associated mechanisms in microstructure evolution and grain refinement of a carbon-doped FeMnCoCr TWIP high-entropy alloy (HEA) during thermomechanical processing. Microstructural characterization before and after deformation was performed using scanning electron microscope (SEM) outfitted with EBSD detector and transmission electron microscopy (TEM) were used for microstructure observation and investigation of nanostructure evolution during deformation. Inverse pole figure (IPF) map, grain boundary map and kernel average misorientation map (KAM) were used for systematic analysis of nanostructural evolution and deformed heterostructure consisting of hierarchical mechanical twinning, shear-banding, microbanding and formation of strain-induced boundaries (SIBs).
DOI: 10.6084/m9.figshare.1536480.v1
title: The effects of the endocannabinoids anandamide and 2-arachidonoylglycerol on human osteoblast proliferation and differentiation

description: The effects of the endocannabinoids anandamide and 2-arachidonoylglycerol on human osteoblast proliferation and differentiation
DOI: 10.6084/m9.figshare.16550796.v1
title: Encuesta estudiantes universitarios

description: Survey that shows the perception of the students in classes in different universities to analyse the flipped classroom model in the learning proccess.
DOI: 10.6084/m9.figshare.16762444.v2
title: Centrifuge characterisation data

description: RAW data files of the project "Design, 3D-printing, and characterisation of a low-cost, open-source centrifuge adaptor for separating large volume clinical blood samples"
DOI: 10.6084/m9.figshare.21975359.v1
title: Tabular Data to Image Generation - Training Data

description: We defined 300 table-image pairs across 6 categories: meat, wine, sweet, fish, gold, fruit, each with 50 table-image pairs. All images are resized to 256*256 pixles, and all tables consist of 5 to 20 rows.
DOI: 10.6084/m9.figshare.7454882.v1
title: Supplementary Material for: Elevated Levels of Urinary Extracellular Vesicle Fibroblast-Specific Protein 1 in Patients with Active Crescentic Glomerulonephritis

description: <b><i>Background/Aims:</i></b> Extracellular vesicles (EVs), including exosomes, are present in various bodily fluids, including urine. We and others previously reported that cells expressing fibroblast-specific protein 1 (FSP1) accumulate within damaged glomeruli, and that urinary FSP1, as well as urinary soluble CD163, could potentially serve as a biomarker of ongoing glomerular injury. <b><i>Methods:</i></b> To test that idea, we collected urine samples from 37 patients with glomerular disease; purified the urinary EVs; characterized them using Nanosight, western blotting, and immunoelectron microscopy; and determined FSP1 and soluble CD163 levels using enzyme-linked immunosorbent assays. <b><i>Results:</i></b> Deemed to be mainly exosomes based on their size distribution, the EVs in urine contained FSP1, and a portion of the FSP1-positive vesicles was also positive for podocalyxin. FSP1 levels in urinary EVs were (1) positively correlated with rates of biopsy-proven cellular crescent formation (<i>r</i> = 0.562, <i>p</i> &lt; 0.001) and total crescent formation (<i>r</i> = 0.448, <i>p</i> = 0.005) among total glomeruli; (2) significantly higher in patients with cellular crescents affecting 20% or more of their glomeruli than in those with fewer affected glomeruli (<i>p</i> = 0.003); and (3) significantly decreased after glucocorticoid and immunosuppressant therapy (<i>p</i> &lt; 0.05). A positive correlation between FSP1 levels in urinary EVs and urinary soluble CD163 levels was confirmed (<i>r</i> = 0.367, <i>p</i> &lt; 0.05). <b><i>Conclusion:</i></b> These data suggest that a portion of urinary FSP1 is secreted as EVs originating from podocytes, and that FSP1 levels reflect active and ongoing glomerular injury and disease activity, such as cellular crescent formation.
DOI: 10.17632/jdxjvrkstw
title: The MOLDY short-range molecular dynamics package

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We describe a parallelised version of the MOLDY molecular dynamics program. This Fortran code is aimed at systems which may be described by short-range potentials and specifically those which may be addressed with the embedded atom method. This includes a wide range of transition metals and alloys. MOLDY provides a range of options in terms of the molecular dynamics ensemble used and the boundary conditions which may be applied. A number of standard potentials are provided, and the modular ... Title of program: MOLDY Catalogue Id: AEJU_v1_0 Nature of problem Moldy addresses the problem of many atoms (of order 10^6) interacting via a classical interatomic potential on a timescale of microseconds. It is designed for problems where statistics must be gathered over a number of equivalent runs, such as measuring thermodynamic properities, diffusion, radiation damage, fracture, twinning deformation, nucleation and growth of phase transitions, sputtering etc. In the vast majority of materials, the interactions are non-pairwise, and the code must be able ... Versions of this program held in the CPC repository in Mendeley Data AEJU_v1_0; MOLDY; 10.1016/j.cpc.2011.07.014
DOI: 10.6084/m9.figshare.14721282.v15
title: THINGS-EEG

description: EEG data for 1854 object concepts presented in RSVP streams. Data from 50 participants.<br>Contents:data_general - main BIDS folder (including participants.tsv)results_general - grand mean RDMssub-** - single-subject raw data, preprocessed data, and RDMs
DOI: 10.6084/m9.figshare.28485197.v1
title: Inflammasome Activation: A Keystone of Proinflammatory Response in Obstructive Sleep Apnea

description: Rationale: As the mechanism that links obstructive sleep apnea(OSA) with the regulation of inflammatory response is not wellknown, it is important to understand the inflammasomeactivation, mainly of NLRP3 (nucleotide-binding oligomerizationdomain-like receptor 3).Objectives: To assess the NLRP3 activity in patients with severeOSA and to identify its role in the systemic inflammatoryresponse of patients with OSA.Methods: We analyzed the NLRP3 activity as well askey components of the inflammasome cascade, such as adaptormolecule apoptosis-associated speck-like protein, caspase-1,Gasdermin D, IL-1b, IL-18, and tissue factor, in monocytesand plasma from patients with severe OSA and controlsubjects without sleep apnea. We explored theassociation of the different key markers with inflammatorycomorbidities.Measurements and Main Results: Monocytes from patientswith severe OSA presented higher NLRP3 activity than those fromcontrol subjects, which directly correlated with the apnea–hypopneaindex and hypoxemic indices. NLRP3 overactivity triggeredinflammatory cytokines (IL-1b and IL-18) via caspase-1 andincreased Gasdermin D, allowing for tissue factor to be released. Invitro models confirmed that monocytes increase NLRP3 signalingunder intermittent hypoxia in a hypoxia-inducible factor-1a–dependent manner, and/or in combination with plasma frompatients with OSA. Plasma concentrations of tissue factor werehigher in patients with OSA with systemic inflammatorycomorbidities than in those without them.Conclusions: In patients with severe OSA, NLRP3 activationmight be a linking mechanism between intermittent hypoxia andother OSA-induced immediate changes with the development ofsystemic inflammatory response.
DOI: 10.6084/m9.figshare.22216735.v2
title: Pollen data of Taro Co and surface lake sediments

description: This dataset contains main pollen data from Lake Taro Co and 90 lakes over the central and western Tibetan Plateau.
DOI: 10.6084/m9.figshare.5127745.v1
title: Supplementary Material for: Multidisciplinary Proactive Psychiatric Consultation Service: Impact on Length of Stay for Medical Inpatients

description: <b><i>Background:</i></b> Mental illness correlates with an increased length of stay (LOS) for patients hospitalized for medical conditions. While psychiatric consultations help manage mental illness among those hospitalized for medical conditions, consultations initiated by nonpsychiatric mental disease may lack maximum effectiveness. <b><i>Methods:</i></b> In a before-and-after design, in 2 contiguous years LOS for internist-initiated, conventional consultation (CC) as usual treatment was compared to LOS of a proactive, mental health professional-initiated, multidisciplinary intervention delivered by the behavioral intervention team (BIT) on the same units. The patient populations included general medical patients with a variety of illnesses. Patients were treated in 3 different inpatient settings with a total capacity of 92 beds serving 15,858 patient visits over 3 comparison years. BIT comprised a psychiatrist, a nurse, and a social worker, each of whom performed the specific tasks of their professional discipline, while collaborating among themselves and their health-care colleagues. BIT provided timely, appropriate, and effective patient care alongside consultative advice and education to their corresponding professional peers. BIT was compared to CC on the outcome of LOS. <b><i>Results:</i></b> There was a statistically significant reduction of LOS favoring BIT over CC for patients with an LOS of &lt;31 days which persisted while controlling for multiple co-morbid factors. Also, a statistically significant spillover effect was suggested by the overall improvement of LOS on units implementing BIT. <b><i>Conclusion:</i></b> BIT is a promising means of lowering LOS on general medical units while providing a high level of care and staff support.
DOI: 10.17632/mmrz3njn6b
title: Second-Life Electric Vehicle Battery Microgrid Dataset

description: The dataset was collected from one year of operation between 2019 and 2020 of the second-life battery based microgrid at the Robert-Mondavi Winery at the University of California, Davis. It includes 5-minute resolution power data from the microgrid's solar photovoltaic arrays, second-life energy storage system, and net demand. Two types of analyzed data are included as secondary data: 1) cleaned power data including calculated demand and 2) analyzed data that quantifies the contribution to the performance of the microgrid from each energy resource at reducing peak-time demand. These datasets may be utilized to evaluate the impacts of second-life energy storage systems and microgrids in terms of economic, environmental, and other factors.
DOI: 10.17632/tvhtmmjp3m
title: Data for: Evaluation of midwifery pelvic floor education and training across the UK and Spain
DOI: 10.6084/m9.figshare.21136810.v1
title: Pollinator_density_submission

description: Pollinator and studied plant density
DOI: 10.6084/m9.figshare.12152712.v1
title: Source data of Umehara et al. 2020

description: This dataset is used by Umehara et al. 2020.
DOI: 10.6084/m9.figshare.25828312.v1
title: A matheuristic for the stochastic two-machine flow shop scheduling problem

description: Data instances for paper "A matheuristic for the stochastic two-machine flow shop scheduling problem"
DOI: 10.6084/m9.figshare.26892673.v4
title: BNP Paribas PF Fraud dataset - Skrub adaptation

description: This is a re-upload from https://challengedata.ens.fr/challenges/104 for development convenience. The original dataset is under Etalab open license, allowing its free redistribution. The context below is from the original challenge.<br><br>Challenge context:<br>BNP Paribas Personal Finance is the leader in personal financing in France and in Europe through its consumer credit activity. A 100% subsidiary of the BNP Paribas Group, BNP Paribas Personal Finance gathers more than 20 000 employees and operates in some thirty countries. Under various brands like Cetelem, Cofinoga and Findomestic, BNP Paribas Personal Finance provides its clients with a complete range of consumer credit, available in stores and car dealership or directly through customer relationship centers and via the company’s local websites.BNP Paribas Personal Finance had developed an active strategy of support for retailers, carmakers and dealers, Web merchants, and various financial institutions (banking and insurance), based on its credit's market experience and its ability to offer services adapted to the activity and the commercial strategy of its business partners. It is also a key player in terms of responsible credit and budgetary awareness.BNPP Personal Finance is, by nature, exposed to Credit Risk, and relies heavily on quantitative models to manage it. Within BNP Paribas Personal Finance Central Risk Department is responsible for the relevance of risk rating models used within all local entities and for maintaining a high level of expertise with integrating new statistical techniques in new modelling environments.The Credit Process Optimization team is part of the RISK department of BNPP PF, within Risk Personal Finance Global Credit Decision-making Policies, we contribute to the rationalization and the optimization of risk decision processes through an analytical approach. We support local risk teams to improve the efficiency of credit processes including fraud part, participating to the best balance between profitability, customer journey and risk profiles.<b>Fraud is a major problem for merchants. Criminals use a wide variety of methods to attack organizations across systems, channels, processes and products.</b> <b>The development of fraud detection methods is thus of crucial importance. Fraud detection is a challenging problem because fraudsters make their best efforts to make their behaviour look legitimate. Another difficulty is that the number of legitimate records is far greater than the number of fraudulent cases.</b>