cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29020292
title: LOCOMOTIVE study

description: <b>Abstract</b>Although brain alterations may occur in post-acute sequelae of SARS-CoV-2 (PASC), their universality and link to neurodegeneration remain unclear. Here, we analyzed blood proteins and brain magnetic resonance imaging in individuals who experienced mild COVID-19 about a year prior, categorized into three groups: Cog-PASC (with cognitive impairment), Other-PASC (without cognitive impairment), and non-PASC controls. The Cog-PASC group showed elevated blood levels of astroglial damage-associated protein, reduced cingulate and insular cortical thickness, and increased paramagnetic susceptibility, indicating iron deposition, particularly in the cingulate cortex and hippocampus. We demonstrated increased choroid plexus volume in Cog-PASC compared to Other-PASC patients, associated with neuronal/astroglial damage, cortical thinning, and iron deposition. Blood proteomic analysis showed significantly altered proteins involved in oxidative stress responses and synaptic function in Cog-PASC patients, linked to neurodegenerative pathways. These findings suggest distinct neurodegenerative processes in Cog-PASC that are not observed in other PASC subtypes, even after mild COVID-19 infection.<br><b>Data collection</b>Data collection for follow-up clinical, imaging, and blood analyses has been completed for this study. This preliminary study aimed to investigate brain MRI and blood proteomics of the discovery cohort to assess whether patients exhibit distinct brain damage, structural alteration, and neurodegenerative processes primarily at the baseline following SARS-CoV-2 infection. Brain MRI scans are performed at baseline and after 1 year, primarily to assess longitudinal structural changes in the brain, including grey matter alterations. Blood samples are collected at baseline, 6 months, and 1 year, while symptom evaluation questionnaires are administered every 3 months.- Cognitive Assessments: Conducted using the Montreal Cognitive Assessment (MoCA), FAS, and PASC symptom scores.- Biological Samples: Serum and plasma samples were collected for proteomic analysis using the Olink 3,072 Explore using Proximity Extension Assay (PEA) technology and SIMOA (Single Molecule Array) HD-X platform.- Imaging: Brain MRI analysis for cortical parcellation, paramagnetic susceptibility, choroid plexus segmentation, and diffusion tensor imaging along perivascular spaces (DTI-ALPS) were performed at baseline to detect structural brain changes.
DOI: 10.15468/dl.aksj34
title: Occurrence Download

description: A dataset containing 1294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus palmatus Thunb.",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1294 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025037-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/cjpf-tb52
title: Walker Lake diatom bottom sample dataset

description: Raw data for the Walker Lake diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/szmx-3m89
title: Wally Creek testate amoebae surface sample dataset

description: Raw data for the Wally Creek testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/47az-ge47
title: Graben Dome, Diamond Craters plant macrofossil dataset

description: Raw data for the Graben Dome, Diamond Craters plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xtz2-tm53
title: Sanggwi-Ri ostracode surface sample dataset

description: Raw data for the Sanggwi-Ri ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/arsv-bt30
title: Eagle testate amoebae surface sample dataset

description: Raw data for the Eagle testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fyem-wc66
title: Kabetogama Lead 210 dataset

description: Raw data for the Kabetogama Lead 210 dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/85vw-n976
title: Le Bois des Lattes testate amoebae surface sample dataset

description: Raw data for the Le Bois des Lattes testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.5nen84
title: Occurrence Download

description: A dataset containing 2455908 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 2455908 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025035-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/trva-6h03
title: Salmisuo Mire testate amoebae surface sample dataset

description: Raw data for the Salmisuo Mire testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/2rxg-8b82
title: ALBI10 pollen surface sample dataset

description: Raw data for the ALBI10 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/geep-hz65
title: KYLE18 pollen surface sample dataset

description: Raw data for the KYLE18 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rvzh-yg16
title: Site HR (Riegel 1965) pollen surface sample dataset

description: Raw data for the Site HR (Riegel 1965) pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4gbh-6f60
title: Hay Bay ostracode surface sample dataset

description: Raw data for the Hay Bay ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/rkze-9p25
title: TK-25 water chemistry dataset

description: Raw data for the TK-25 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/nwkg-8975
title: Little Cedar Pond diatom bottom sample dataset

description: Raw data for the Little Cedar Pond diatom bottom sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/986k-pp23
title: Otter Lake water chemistry dataset

description: Raw data for the Otter Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/w5q2-0h73
title: Harvey Lead 210 dataset

description: Raw data for the Harvey Lead 210 dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hsgk-a844
title: Salicea pollen dataset

description: Raw data for the Salicea pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/04s1-tp10
title: Aermo Pond pollen surface sample dataset

description: Raw data for the Aermo Pond pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/58h6-wp86
title: River Estates [8GI38] vertebrate fauna dataset

description: Raw data for the River Estates [8GI38] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/52gt-1e98
title: Poiana Stiol pollen dataset

description: Raw data for the Poiana Stiol pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1tyk-wh95
title: LDDsite1735 ostracode surface sample dataset

description: Raw data for the LDDsite1735 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bpq7-7950
title: Adams Trail Peatland testate amoebae surface sample dataset

description: Raw data for the Adams Trail Peatland testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/7ae4-8464
title: Nesbitt Lake diatom surface sample dataset

description: Raw data for the Nesbitt Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.vh3y73
title: Occurrence Download

description: A dataset containing 30551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Month is one of (March, April, May)",
 "OccurrenceStatus is Present",
 "TaxonKey is Tringa totanus (Linnaeus, 1758)",
 "Year 2010-2010"
 ]
}

 The dataset includes 30551 records from 150 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025038-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/wc2c-h753
title: Lake Erie/Nanticoke Creek ostracode surface sample dataset

description: Raw data for the Lake Erie/Nanticoke Creek ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4qrb-a590
title: LDDsite4860 water chemistry dataset

description: Raw data for the LDDsite4860 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/tnsp-gk46
title: Bluff Siding [47BF45] vertebrate fauna dataset

description: Raw data for the Bluff Siding [47BF45] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r7rw-0t96
title: Zhenglan Banner ostracode surface sample dataset

description: Raw data for the Zhenglan Banner ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/wbca-xn32
title: Ackerman Lake plant macrofossil dataset

description: Raw data for the Ackerman Lake plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/hv91-ph09
title: Lenora Lake water chemistry dataset

description: Raw data for the Lenora Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zr2k-t303
title: Lake Nipissing/Callander Bay ostracode surface sample dataset

description: Raw data for the Lake Nipissing/Callander Bay ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15120118
title: 3D Liver Spheroids Brightfield 256x256 Images + ATP labels

description: This dataset contains 20,000 brightfield microscopy images of human liver spheroids used in the development and validation of Neural Viability Regression (NViR), a deep learning-based method for non-invasive estimation of cell viability. Each spheroid was subjected to controlled drug treatment conditions within a microphysiological system (MPS), and viability was measured using the ATP-based CellTiter-Glo® 3D Cell Viability Assay.

 

The dataset includes:

• 2,359 labeled images with matched ATP viability measurements (in nM).

• ~17,500 unlabeled images used in downstream toxicity prediction tasks.

• Images span multiple imaging devices (Echo Rebel, Echo Revolve, Cytation, Thorlabs) from two labs to enable testing generalization.

• Each image is accompanied by metadata including experimental day, treatment type, compound name and concentration, microscope model, and (if labeled) viability value.

 

This resource supports the development of non-invasive cell viability models and enables further research in AI-enhanced toxicology, drug safety assessment, and 3D cell culture analysis.

 

Please cite the following paper if you use this dataset:

Dubinsky et al., Non-Invasive Quantification of Viability in Spheroids Using Deep Learning, 2025. https://doi.org/10.1101/2025.03.09.64224
DOI: 10.21233/f5gd-he92
title: Zwollings pollen dataset

description: Raw data for the Zwollings pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1yxn-9162
title: TIOG11 pollen surface sample dataset

description: Raw data for the TIOG11 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/g3a3-fn49
title: CHEL15 pollen surface sample dataset

description: Raw data for the CHEL15 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15374443
title: 3D Liver Spheroids Brightfield 256x256 Images + ATP labels

description: This dataset contains 20,000 brightfield microscopy images of human liver spheroids used in the development and validation of Neural Viability Regression (NViR), a deep learning-based method for non-invasive estimation of cell viability. Each spheroid was subjected to controlled drug treatment conditions within a microphysiological system (MPS), and viability was measured using the ATP-based CellTiter-Glo® 3D Cell Viability Assay.

 

The dataset includes:

• 2,359 labeled images with matched ATP viability measurements (in nM).

• ~17,500 unlabeled images used in downstream toxicity prediction tasks.

• Images span multiple imaging devices (Echo Rebel, Echo Revolve, Cytation, Thorlabs) from two labs to enable testing generalization.

• Each image is accompanied by metadata including experimental day, treatment type, compound name and concentration, microscope model, and (if labeled) viability value.

 

This resource supports the development of non-invasive cell viability models and enables further research in AI-enhanced toxicology, drug safety assessment, and 3D cell culture analysis.

 

Please cite the following paper if you use this dataset:

Dubinsky et al., Non-Invasive Quantification of Viability in Spheroids Using Deep Learning, 2025. https://doi.org/10.1101/2025.03.09.64224
DOI: 10.5281/zenodo.15120117
title: 3D Liver Spheroids Brightfield 256x256 Images + ATP labels

description: This dataset contains 20,000 brightfield microscopy images of human liver spheroids used in the development and validation of Neural Viability Regression (NViR), a deep learning-based method for non-invasive estimation of cell viability. Each spheroid was subjected to controlled drug treatment conditions within a microphysiological system (MPS), and viability was measured using the ATP-based CellTiter-Glo® 3D Cell Viability Assay.

 

The dataset includes:

• 2,359 labeled images with matched ATP viability measurements (in nM).

• ~17,500 unlabeled images used in downstream toxicity prediction tasks.

• Images span multiple imaging devices (Echo Rebel, Echo Revolve, Cytation, Thorlabs) from two labs to enable testing generalization.

• Each image is accompanied by metadata including experimental day, treatment type, compound name and concentration, microscope model, and (if labeled) viability value.

 

This resource supports the development of non-invasive cell viability models and enables further research in AI-enhanced toxicology, drug safety assessment, and 3D cell culture analysis.

 

Please cite the following paper if you use this dataset:

Dubinsky et al., Non-Invasive Quantification of Viability in Spheroids Using Deep Learning, 2025. https://doi.org/10.1101/2025.03.09.64224
DOI: 10.21233/8thg-6w60
title: Jay Lake pollen dataset

description: Raw data for the Jay Lake pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/kd01-qh79
title: Big Alkali Lake water chemistry dataset

description: Raw data for the Big Alkali Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.