cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21670751.v1
title: ESM_File_Fig4 from A tunable electromagnetic metagrating

description: We explore electromagnetic (EM) wave incidence upon gratings of reconfigurable metamaterial cylinders, which collectively act as a metagrating, to identify their potential as reconfigurable subwavelength surfaces. The metacylinders are created by a closely spaced microstructured array of thin plates that, in the limit of small inter-plate spacing, are described by a semi-analytical continuum model. We build upon metacylinder analysis in water waves, translating this to EM for TE polarization (longitudinal magnetic field) for which the metacylinders exhibit anisotropic scattering; this is exploited for the multiple scattering of light by an infinite metagrating of uniform cylinder radius and angle, for which we retrieve the far-field reflection and transmission spectra for plane-wave incidence. These spectra reveal unusual effects including perfect reflection and a negative Goos–Hänchen shift in the transmitted field, as well as perfect symmetry in the far-field scattering coefficients. The metagrating also hosts Rayleigh–Bloch surface waves whose dispersion is contingent on the uniform cylinder angle, shifting under rotation towards the light-line as the cylinder angle approaches the horizontal. For both plane-wave scattering and the calculation of the array-guided modes, the cylinder angle is the principal variable in determining the wave interaction, and the metagrating is tunable simply through rotation of the constituent metacylinders.
DOI: 10.6084/m9.figshare.21670773
title: FE model of cantilever beam from Nonlinear mapping of non-conservative forces for reduced-order modelling

description: Non-intrusive or indirect reduced-order modelling strategies, such as the implicit condensation and expansion method, are applicable to geometrically nonlinear structures modelled using commercial finite-element (FE) software. Traditionally, the non-conservative forces acting on the structure are reduced via a linear projection onto the space spanned by the reduced modeshapes. As such, only the forces acting directly on these reduced modes can be captured, while any energy gained or dissipated by the statically condensed modes is neglected. This can lead to significant inaccuracies in the reduced-order model (ROM) predictions, which is demonstrated here using a 2-degrees-of-freedom (DOF) oscillator, and an FE model of a cantilever beam. It is shown that the non-conservative forces acting on the statically condensed modes can be captured using a nonlinear mapping of the physical DOFs into the reduced coordinates. This introduces additional terms in the reduced equations of motion, which we describe as <i>force compensation</i>. Excellent agreement is observed between the forced response curves of the full-order models and those of our proposed ROMs, both for the oscillator as well as the cantilever beam under different external excitation conditions (i.e. a constant-direction force and a follower force).
DOI: 10.6084/m9.figshare.21670773.v1
title: FE model of cantilever beam from Nonlinear mapping of non-conservative forces for reduced-order modelling

description: Non-intrusive or indirect reduced-order modelling strategies, such as the implicit condensation and expansion method, are applicable to geometrically nonlinear structures modelled using commercial finite-element (FE) software. Traditionally, the non-conservative forces acting on the structure are reduced via a linear projection onto the space spanned by the reduced modeshapes. As such, only the forces acting directly on these reduced modes can be captured, while any energy gained or dissipated by the statically condensed modes is neglected. This can lead to significant inaccuracies in the reduced-order model (ROM) predictions, which is demonstrated here using a 2-degrees-of-freedom (DOF) oscillator, and an FE model of a cantilever beam. It is shown that the non-conservative forces acting on the statically condensed modes can be captured using a nonlinear mapping of the physical DOFs into the reduced coordinates. This introduces additional terms in the reduced equations of motion, which we describe as <i>force compensation</i>. Excellent agreement is observed between the forced response curves of the full-order models and those of our proposed ROMs, both for the oscillator as well as the cantilever beam under different external excitation conditions (i.e. a constant-direction force and a follower force).
DOI: 10.6084/m9.figshare.21670776
title: R scripts from General cognitive performance declines with female age and is negatively related to fledging success in a wild bird

description: This folder contains the 3 R scripts that were used to analyse the data.
DOI: 10.6084/m9.figshare.21670776.v1
title: R scripts from General cognitive performance declines with female age and is negatively related to fledging success in a wild bird

description: This folder contains the 3 R scripts that were used to analyse the data.
DOI: 10.5519/qd.i784rang
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (41 records)
DOI: 10.6084/m9.figshare.21670788
title: Dataset S1 from King- and queen-specific degradation of uric acid contributes to reproduction in termites

description: Caste-based reproductive division of labour in social insects is built on asymmetries in resource allocation within colonies. Kings and queens dominantly consume limited resources for reproduction, while non-reproductive castes such as workers and soldiers help reproductive castes. Studying the regulation of such asymmetries in resource allocation is crucial for understanding the maintenance of sociality in insects, although the molecular background is poorly understood. We focused on uric acid, which is reserved and used as a valuable nitrogen source in wood-eating termites. We found that king- and queen-specific degradation of uric acid contributes to reproduction in the subterranean termite <i>Reticulitermes speratus</i>. The urate oxidase gene (<i>RsUAOX</i>), which catalyses the first step of nitrogen recycling from stored uric acid, was highly expressed in mature kings and queens, and upregulated with differentiation into neotenic kings/queens. Suppression of uric acid degradation decreased the number of eggs laid per queen. Uric acid was shown to be provided by workers to reproductive castes. Our results suggest that the capacity to use nitrogen, which is essential for the protein synthesis required for reproduction, maintains to colony cohesion expressed as the reproductive monopoly held by kings and queens.
DOI: 10.6084/m9.figshare.21670788.v1
title: Dataset S1 from King- and queen-specific degradation of uric acid contributes to reproduction in termites

description: Caste-based reproductive division of labour in social insects is built on asymmetries in resource allocation within colonies. Kings and queens dominantly consume limited resources for reproduction, while non-reproductive castes such as workers and soldiers help reproductive castes. Studying the regulation of such asymmetries in resource allocation is crucial for understanding the maintenance of sociality in insects, although the molecular background is poorly understood. We focused on uric acid, which is reserved and used as a valuable nitrogen source in wood-eating termites. We found that king- and queen-specific degradation of uric acid contributes to reproduction in the subterranean termite <i>Reticulitermes speratus</i>. The urate oxidase gene (<i>RsUAOX</i>), which catalyses the first step of nitrogen recycling from stored uric acid, was highly expressed in mature kings and queens, and upregulated with differentiation into neotenic kings/queens. Suppression of uric acid degradation decreased the number of eggs laid per queen. Uric acid was shown to be provided by workers to reproductive castes. Our results suggest that the capacity to use nitrogen, which is essential for the protein synthesis required for reproduction, maintains to colony cohesion expressed as the reproductive monopoly held by kings and queens.
DOI: 10.6084/m9.figshare.21670791
title: R code S1 from King- and queen-specific degradation of uric acid contributes to reproduction in termites

description: Caste-based reproductive division of labour in social insects is built on asymmetries in resource allocation within colonies. Kings and queens dominantly consume limited resources for reproduction, while non-reproductive castes such as workers and soldiers help reproductive castes. Studying the regulation of such asymmetries in resource allocation is crucial for understanding the maintenance of sociality in insects, although the molecular background is poorly understood. We focused on uric acid, which is reserved and used as a valuable nitrogen source in wood-eating termites. We found that king- and queen-specific degradation of uric acid contributes to reproduction in the subterranean termite <i>Reticulitermes speratus</i>. The urate oxidase gene (<i>RsUAOX</i>), which catalyses the first step of nitrogen recycling from stored uric acid, was highly expressed in mature kings and queens, and upregulated with differentiation into neotenic kings/queens. Suppression of uric acid degradation decreased the number of eggs laid per queen. Uric acid was shown to be provided by workers to reproductive castes. Our results suggest that the capacity to use nitrogen, which is essential for the protein synthesis required for reproduction, maintains to colony cohesion expressed as the reproductive monopoly held by kings and queens.
DOI: 10.6084/m9.figshare.21670791.v1
title: R code S1 from King- and queen-specific degradation of uric acid contributes to reproduction in termites

description: Caste-based reproductive division of labour in social insects is built on asymmetries in resource allocation within colonies. Kings and queens dominantly consume limited resources for reproduction, while non-reproductive castes such as workers and soldiers help reproductive castes. Studying the regulation of such asymmetries in resource allocation is crucial for understanding the maintenance of sociality in insects, although the molecular background is poorly understood. We focused on uric acid, which is reserved and used as a valuable nitrogen source in wood-eating termites. We found that king- and queen-specific degradation of uric acid contributes to reproduction in the subterranean termite <i>Reticulitermes speratus</i>. The urate oxidase gene (<i>RsUAOX</i>), which catalyses the first step of nitrogen recycling from stored uric acid, was highly expressed in mature kings and queens, and upregulated with differentiation into neotenic kings/queens. Suppression of uric acid degradation decreased the number of eggs laid per queen. Uric acid was shown to be provided by workers to reproductive castes. Our results suggest that the capacity to use nitrogen, which is essential for the protein synthesis required for reproduction, maintains to colony cohesion expressed as the reproductive monopoly held by kings and queens.
DOI: 10.5281/zenodo.7211720
title: Dataset of gene family analysis for Gekko japonicus and other sauropsids

description: We assembled a chromosome-level genome of <em>Gekko japonicus</em> and then performed a series of gene family analyses on it and other representative sauropsids generated a dataset containing predicted sequences, sequence alignments and phylogenetic trees of the corresponding genes.
DOI: 10.5281/zenodo.7211719
title: Dataset of gene family analysis for Gekko japonicus and other sauropsids

description: We assembled a chromosome-level genome of <em>Gekko japonicus</em> and then performed a series of gene family analyses on it and other representative sauropsids generated a dataset containing predicted sequences, sequence alignments and phylogenetic trees of the corresponding genes.
DOI: 10.6084/m9.figshare.14602683
title: Supplementary table 2

description: Selected data from table 1 and comparison with data from previous retinal inflammation analysis<br>
DOI: 10.6084/m9.figshare.14602683.v1
title: Supplementary table 2

description: Selected data from table 1 and comparison with data from previous retinal inflammation analysis<br>
DOI: 10.6084/m9.figshare.21632357
title: Video Data Analysis and Police Body-Worn Footage: Table 1 through 5

description: This includes an SPSS command file (.sps) that will execute, with comments, a series of descriptive statistics against the data file (.sav) that correspond to tables 1-5 in the manuscript *McCluskey, John and Craig Uchida (2023) "Video Data Analysis and Police Body-Worn Camera Footage" Sociological Methods and Research. The data are based on observers' assessments of BWC audio and video channels of LAPD officers' footage from encounters and events. <br> The syntax file should be run against the .sav file in the archive. The syntax is saved in the .txt file and should offer a guidance in how the results might be obtained in Excel or another program such as R or STATA using the CSV file stored here. <br>
DOI: 10.6084/m9.figshare.21670810
title: Supplementary files from Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins

description: Bioinformatic analyses, code, read files and hit tables.
DOI: 10.6084/m9.figshare.21670810.v1
title: Supplementary files from Discovery of novel papillomaviruses in the critically endangered Malayan and Chinese pangolins

description: Bioinformatic analyses, code, read files and hit tables.
DOI: 10.5517/ccdc.csd.cc2b91vk
title: CCDC 2153658: Experimental Crystal Structure Determination

description: Related Article: Jianwei Xie, Muhammad Suleman, Ke Zhang, Ping Lu, Yanguang Wang|2022|J.Org.Chem.|87|15938|doi:10.1021/acs.joc.2c02076
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b91zp
title: CCDC 2153662: Experimental Crystal Structure Determination

description: Related Article: Jianwei Xie, Muhammad Suleman, Ke Zhang, Ping Lu, Yanguang Wang|2022|J.Org.Chem.|87|15938|doi:10.1021/acs.joc.2c02076
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.14602668
title: Supplemental table 1 and 2-Rat values and Differential genes.zip

description: This table contains individual information for gene expression patterns of rat optic nerve head derived from deep sequencing of the poly(A+)RNA for both naive animals (5 separate samples; Columns D-H), a pooled sample for rNAION induced (post-3 days) ONH tissue from 6 animals treated with PGJ2 (column I), and a pooled sample for rNAION induced (post-3 days) ONH tissue from 6 animals treated with vehicle (column J). Column K represents the mean for all naive animals, and column L is the ratio of the values for Vehicle/naive expression. Column M is the ratio of the values for Vehicle/PGJ2 expression.
DOI: 10.6084/m9.figshare.14602668.v1
title: Supplemental table 1 and 2-Rat values and Differential genes.zip

description: This table contains individual information for gene expression patterns of rat optic nerve head derived from deep sequencing of the poly(A+)RNA for both naive animals (5 separate samples; Columns D-H), a pooled sample for rNAION induced (post-3 days) ONH tissue from 6 animals treated with PGJ2 (column I), and a pooled sample for rNAION induced (post-3 days) ONH tissue from 6 animals treated with vehicle (column J). Column K represents the mean for all naive animals, and column L is the ratio of the values for Vehicle/naive expression. Column M is the ratio of the values for Vehicle/PGJ2 expression.
DOI: 10.3886/e181561v1
title: COEP Replication Package for "Group Cooperation of Village Officials in Chinese Rural Resettlement: A Lab in the Field"

description: The data comes from primary survey collection as well as lab-in-the-field experiments in seven villages in Qingdao, China. The article in Contemporary Economic Policy explains the data variables in the summary statistics.
DOI: 10.6084/m9.figshare.21070288
title: Datasets of the study "Cyberpolitics of Electoral Processes: A Comparative Study on Digital Voting"

description: Datasets used in the study " <strong>Cyberpolitics of Electoral Processes: A Comparative Study on Digital Voting</strong> "
DOI: 10.6084/m9.figshare.21070288.v2
title: Datasets of the study "Cyberpolitics of Electoral Processes: A Comparative Study on Digital Voting"

description: Datasets used in the study " <strong>Cyberpolitics of Electoral Processes: A Comparative Study on Digital Voting</strong> "
DOI: 10.5281/zenodo.7394736
title: A chromosome-level genome assembly of Gekko japonicus

description: We assembled and annotated a chromosome-level genome of <em>Gekko japonicus.</em>
DOI: 10.5281/zenodo.7394737
title: A chromosome-level genome assembly of Gekko japonicus

description: We assembled and annotated a chromosome-level genome of <em>Gekko japonicus.</em>
DOI: 10.5281/zenodo.7394851
title: MN-DS: A Multilabeled News Dataset for News Articles Hierarchical Classification

description: <strong>Overview</strong> This dataset contains 10,917 news articles with hierarchical news categories collected between January 1st 2019, and December 31st 2019 classified by using NewsCodes Media Topic taxonomy. We manually labelled the articles based on a hierarchical taxonomy with 17 first-level and 109 second-level categories. This dataset can be used to train machine learning models for automatically classifying news articles by topic. This dataset can be helpful for researchers working on news structuring, classification, and predicting future events based on released news. <strong>Reproducibility of results</strong> The results presented in the research paper "MN-DS: A Multilabeled News Dataset for News Articles Hierarchical Classification", technical validation can be reproduced using functions in github repository. <strong>Licenses</strong> The dataset is made available under a CC-BY 4.0 license (see `LICENSE_DATA.txt`).
DOI: 10.5281/zenodo.7394850
title: MN-DS: A Multilabeled News Dataset for News Articles Hierarchical Classification

description: <strong>Overview</strong> This dataset contains 10,917 news articles with hierarchical news categories collected between January 1st 2019, and December 31st 2019 classified by using NewsCodes Media Topic taxonomy. We manually labelled the articles based on a hierarchical taxonomy with 17 first-level and 109 second-level categories. This dataset can be used to train machine learning models for automatically classifying news articles by topic. This dataset can be helpful for researchers working on news structuring, classification, and predicting future events based on released news. <strong>Reproducibility of results</strong> The results presented in the research paper "MN-DS: A Multilabeled News Dataset for News Articles Hierarchical Classification", technical validation can be reproduced using functions in github repository. <strong>Licenses</strong> The dataset is made available under a CC-BY 4.0 license (see `LICENSE_DATA.txt`).
DOI: 10.5519/qd.gf8xuo36
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (820344 records)
DOI: 10.5281/zenodo.7394895
title: ERA5 Dataset used for sea-ice forecasting with IceNet

description: Monthly 2 metre temperature and other variables used for running IceNet. The data is from ECMWF ERA5 between January 2019 to December 2021.
DOI: 10.5281/zenodo.7394894
title: ERA5 Dataset used for sea-ice forecasting with IceNet

description: Monthly 2 metre temperature and other variables used for running IceNet. The data is from ECMWF ERA5 between January 2019 to December 2021.
DOI: 10.5281/zenodo.7374480
title: Optimierungsergebnisse von urbs (Master's Thesis TUM-ENS) Version: großer Wasserspeicher

description: This dataset is a supplement to the master thesis "Developing scenarios for future residential heating supply in an urban context with a case study in Augsburg" at the Technical University of Munich.<br> These data are the optimization results of urbs-MIP, which is an energy optimization tool of the Chair of Renewable and Sustainable Energy Systems (URL: https://github.com/tum-ens/urbs). With this data, a large heat storage was assumed as given.
DOI: 10.5281/zenodo.7374479
title: Optimierungsergebnisse von urbs (Master's Thesis TUM-ENS) Version: großer Wasserspeicher

description: This dataset is a supplement to the master thesis "Developing scenarios for future residential heating supply in an urban context with a case study in Augsburg" at the Technical University of Munich.<br> These data are the optimization results of urbs-MIP, which is an energy optimization tool of the Chair of Renewable and Sustainable Energy Systems (URL: https://github.com/tum-ens/urbs). With this data, a large heat storage was assumed as given.
DOI: 10.6084/m9.figshare.3761562.v2414
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.21227/yp99-xy13
title: Software engineering metrics for Java repositories

description: Software engineering metrics collected via SourceMeter for open-source Java repositories.
DOI: 10.5281/zenodo.7394925
title: An in silico guided directed evolution of protease: Spotlighting the beneficial positions

description: Supplementary Information for "An in silico guided directed evolution of protease: Spotlighting the beneficial positions".
DOI: 10.5281/zenodo.7394924
title: An in silico guided directed evolution of protease: Spotlighting the beneficial positions

description: Supplementary Information for "An in silico guided directed evolution of protease: Spotlighting the beneficial positions".
DOI: 10.6084/m9.figshare.21670859
title: Table-S5-Eukarya-GO-enrichment-analysis-results.tsv

description: our table S5 from the corresponding publication, it was too large to store with the manuscript
DOI: 10.5281/zenodo.7394799
title: Effect of the lips on the gliding performance of the Chrysopelea paradisi snake with 3D OpenFOAM on Azure (repro-packs)

description: Reproducibility packages (data and scripts) to generate the figures of the chapter "Aerodynamic effects of the snake lips" (section "Three-dimensional study with OpenFOAM on Azure") in Olivier Mesnard's Ph.D. Thesis. The dataset also includes the Docker image used to run 3D OpenFOAM simulations in a container-based environment on Microsoft Azure Batch. (See README at github.com/barbagroup/snake-lips-3d for details on how to reproduce the figures.)
DOI: 10.5281/zenodo.7394800
title: Effect of the lips on the gliding performance of the Chrysopelea paradisi snake with 3D OpenFOAM on Azure (repro-packs)

description: Reproducibility packages (data and scripts) to generate the figures of the chapter "Aerodynamic effects of the snake lips" (section "Three-dimensional study with OpenFOAM on Azure") in Olivier Mesnard's Ph.D. Thesis. The dataset also includes the Docker image used to run 3D OpenFOAM simulations in a container-based environment on Microsoft Azure Batch. (See README at github.com/barbagroup/snake-lips-3d for details on how to reproduce the figures.)