cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0157776.10fu
title: SH0157776.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.60507/fk2/ox9xtm/anmymr
title: images_UAV1-RGB_230713_part_7.zip
DOI: 10.60507/fk2/ox9xtm/s1ozvh
title: images_UAV1-RGB_230713_part_9.zip
DOI: 10.60507/fk2/ox9xtm/wqhauq
title: images_UAV1-RGB_230713_part_8.zip
DOI: 10.15156/bio/sh0157777.10fu
title: SH0157777.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.60507/fk2/ox9xtm/ietta4
title: images_UAV1-RGB_230720_part_11.zip
DOI: 10.60507/fk2/ox9xtm/mwmlcu
title: images_UAV1-RGB_230720_part_10.zip
DOI: 10.15156/bio/sh0157778.10fu
title: SH0157778.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.60507/fk2/ox9xtm/71izcl
title: images_UAV1-RGB_230720_part_12.zip
DOI: 10.60507/fk2/ox9xtm/9egayv
title: images_UAV1-RGB_230720_part_13.zip
DOI: 10.15156/bio/sh0157779.10fu
title: SH0157779.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.60507/fk2/ox9xtm/yu1tag
title: images_UAV1-RGB_230720_part_14.zip
DOI: 10.15156/bio/sh0157780.10fu
title: SH0157780.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157781.10fu
title: SH0157781.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.60507/fk2/ox9xtm/o4wtrl
title: images_UAV1-RGB_230720_part_15.zip
DOI: 10.60507/fk2/ox9xtm/s9lool
title: images_UAV1-RGB_230720_part_16.zip
DOI: 10.60507/fk2/ox9xtm/oqxn5h
title: images_UAV1-RGB_230720_part_17.zip
DOI: 10.60507/fk2/ox9xtm/v4bv0m
title: images_UAV1-RGB_230720_part_18.zip
DOI: 10.15156/bio/sh0157782.10fu
title: SH0157782.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0157783.10fu
title: SH0157783.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.mwmwjh
title: Occurrence Download

description: A dataset containing 50688 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lavandula angustifolia"
 ]
}

 The dataset includes 50688 records from 693 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000875-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qjy3uf
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Micronesia (Federated States of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018086-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bwr86t
title: Occurrence Download

description: A dataset containing 607 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave kerchovei"
 ]
}

 The dataset includes 607 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018088-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqqsz2
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Hippocamelus antisensis"
 ]
}

 The dataset includes 269 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018089-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvfhvf
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus rotundus",
 "Country is Afghanistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 61 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018090-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6tpxa
title: Occurrence Download

description: A dataset containing 69 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 69 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018091-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urftjd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Guyana",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018092-250717081556266/datasets/export for details.
DOI: 10.15468/dl.a34ew2
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 126 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018093-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4kxzaf
title: Occurrence Download

description: A dataset containing 72 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triplophysa orientalis"
 ]
}

 The dataset includes 72 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018094-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yk4jus
title: Occurrence Download

description: A dataset containing 962 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Malaysia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 962 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018095-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15736090
title: Data release of Paying Attention to Other Animal Detections Improves Camera Trap Classification Models

description: Data release of: Paying Attention to Other Animal Detections Improves Camera Trap Classification Models

 

Preprint is available on bioRxiv : https://www.biorxiv.org/content/10.1101/2025.07.15.664849

 

Code is available on GitHub : https://github.com/gdussert/MCA_Classifier

 

This repository contains:

 

* models:

   * crop_classifier.pt

   * mca_classifier.pt

* data:

   * serengeti_train: training set of Snapshot Serengeti

   * serengeti_test: test set of Snapshot Serengeti

   * serengeti_toy: toy dataset to quickly test all the scripts, it contains only the pictures of Snapshot Serengeti camera trap location C12

   * safari2024: whole Snapshot Safari 2024 Expansion dataset

   * crop_images.zip: crop images of Snapshot Serengeti camera trap location C12

 

Please cite our paper for the models: 

 

@misc{dussert2025attention,    author = {Dussert, Gaspard and Dray, Stéphane and Chamaillé-Jammes, Simon and Miele, Vincent},    title = {Paying Attention to Other Animal Detections Improves Camera Trap Classification Models},    year = {2025},    doi = {10.1101/2025.07.15.664849},    publisher = {bioRxiv},    type = {preprint},}

 

Please cite this paper for the Serengeti dataset: 

 

@article{swanson2015snapshot,  title={Snapshot Serengeti, high-frequency annotated camera trap images of 40 mammalian species in an African savanna},  author={Swanson, Alexandra and Kosmala, Margaret and Lintott, Chris and Simpson, Robert and Smith, Arfon and Packer, Craig},  journal={Scientific data},  volume={2},  number={1},  pages={1--14},  year={2015},  publisher={Nature Publishing Group}}
DOI: 10.15468/dl.e2bd6b
title: Occurrence Download

description: A dataset containing 1597 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave attenuata"
 ]
}

 The dataset includes 1597 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018096-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uztmyp
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus rotundus",
 "Country is Austria",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018098-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pmzn7a
title: Occurrence Download

description: A dataset containing 1521 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Hong Kong, Chinese Taipei)",
 "TaxonKey is Tetrastigma hemsleyanum"
 ]
}

 The dataset includes 1521 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018097-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ef3vc2
title: Occurrence Download

description: A dataset containing 292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Israel",
 "HasCoordinate is true"
 ]
}

 The dataset includes 292 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018099-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16222084
title: HoPeS Reflection Conversation

description: The Markdown file contains a user's reflection guided by the AI-driven Reflective Learning Companion (RLC). The user played the role of a system observer and researcher (research supplier) in a simulation that involved multiple LLM agents representing different stakeholders in a land use system.
DOI: 10.5281/zenodo.16222085
title: HoPeS Reflection Conversation

description: The Markdown file contains a user's reflection guided by the AI-driven Reflective Learning Companion (RLC). The user played the role of a system observer and researcher (research supplier) in a simulation that involved multiple LLM agents representing different stakeholders in a land use system.
DOI: 10.15468/dl.e7g3b6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus rotundus",
 "Country is Barbados",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018100-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgf525
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADJ7004"
 ]
}

 The dataset includes 11 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018101-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.weqsq2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Marshall Islands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018104-250717081556266/datasets/export for details.
DOI: 10.15468/dl.sdbvez
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Maldives",
 "HasCoordinate is true"
 ]
}

 The dataset includes 24 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018103-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tn7g6
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Agave angustiarum"
 ]
}

 The dataset includes 249 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018106-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjnqjp
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lissachatina fulica",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 127 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018105-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xpdzn7
title: Occurrence Download

description: A dataset containing 1751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1751 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018107-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gj6f5y
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADL4598"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018108-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16220589
title: Data and analysis for "time–temperature–moisture superposition principle of amorphous cellulose"
DOI: 10.5281/zenodo.16220590
title: Data and analysis for "time–temperature–moisture superposition principle of amorphous cellulose"
DOI: 10.15468/dl.z27sdv
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bidens pilosa",
 "Country is Kenya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 58 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018110-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.