cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.j4k3t6f
title: Data from: Measures of oxidative state are primarily driven by extrinsic factors in a long-distance migrant

description: Oxidative stress is a likely consequence of hard physical exertion, and
 thus a potential mediator of life-history tradeoffs in migratory animals.
 However, little is known about the relative importance of intrinsic and
 extrinsic stressors on the oxidative state of individuals in wild
 populations. We quantified the relationships between air temperature, sex,
 body condition, and three markers of oxidative state (malondialdehyde,
 superoxide dismutase and total antioxidant capacity), across hundreds of
 individuals of a long-distance migrant (the brent goose Branta bernicla
 hrota) during wintering and spring staging. We found that air temperature
 and migratory stage were the strongest predictors of oxidative state. This
 emphasizes the importance of extrinsic factors in regulating the oxidative
 state of migrating birds, with differential effects across the migration.
 The significance of abiotic effects demonstrates an additional mechanism
 by which changing climates may affect migratory costs.
description: Oxidative stress
 measures of Brent geeseFile contains metadata
 and oxidative stress measures from plasma (MDA - malondialdehyde, SOD -
 superoxide dismutase, TAC - total antioxidant concentration, URIC - uric
 acid) from all sampled brent geese.Branta_data.csv
DOI: 10.5281/zenodo.17670598
title: Datos relativos al ENSAYO  1, del proyecto ET4DROUGHT

description: Se estableció un ensayo en una parcela lisimétrica de la finca La Orden para comparar datos de campo con valores satelitales y modelos de evapotranspiración (ET). Se dispuso una superficie principal de 3000 m² para asegurar al menos 8 píxeles satelitales y dos tratamientos adicionales de 1500 m² con diferentes estrategias de riego. En el lisímetro se instalaron sensores a varias profundidades para caracterizar el movimiento del agua en el suelo. La información obtenida mediante sensores puntuales (contenido de agua, temperatura del suelo), sensores masivos (UAV con cámaras térmicas y multiespectrales), datos de potencial hídrico, desarrollo del cultivo (PAR), producción y calidad permitió recopilar un amplio conjunto de datos en las campañas 2023 y 2024. En la segunda campaña se repitió el ensayo para ampliar la base de datos y mejorar la estimación de las necesidades hídricas y la ET del cultivo.

10 archivos excell+readme:



Suelo: Humedad suelo,textura

Planta:Ndvi,PAR,potencial hidrico,suelo sombreado, Tªcubierta,producción , calidad

Riego
DOI: 10.5281/zenodo.17670599
title: Datos relativos al ENSAYO  1, del proyecto ET4DROUGHT

description: Se estableció un ensayo en una parcela lisimétrica de la finca La Orden para comparar datos de campo con valores satelitales y modelos de evapotranspiración (ET). Se dispuso una superficie principal de 3000 m² para asegurar al menos 8 píxeles satelitales y dos tratamientos adicionales de 1500 m² con diferentes estrategias de riego. En el lisímetro se instalaron sensores a varias profundidades para caracterizar el movimiento del agua en el suelo. La información obtenida mediante sensores puntuales (contenido de agua, temperatura del suelo), sensores masivos (UAV con cámaras térmicas y multiespectrales), datos de potencial hídrico, desarrollo del cultivo (PAR), producción y calidad permitió recopilar un amplio conjunto de datos en las campañas 2023 y 2024. En la segunda campaña se repitió el ensayo para ampliar la base de datos y mejorar la estimación de las necesidades hídricas y la ET del cultivo.

10 archivos excell+readme:



Suelo: Humedad suelo,textura

Planta:Ndvi,PAR,potencial hidrico,suelo sombreado, Tªcubierta,producción , calidad

Riego
DOI: 10.5061/dryad.ss21g
title: Data from: Morphological integration and pleiotropy in the adaptive body shape of the snail-feeding carabid beetle Damaster blaptoides

description: The snail-feeding carabid beetle Damaster blaptoides exhibits diverse head
 and thorax morphologies, and these morphotypes are linked with two
 alternative feeding behaviors. Stout-shaped beetles feed on snails by
 crushing the shells, whereas slender-shaped beetles consume snails by
 inserting their heads into the shells. A trade-off exists between these
 feeding strategies. Because intermediate-shaped beetles are less
 proficient in these two behaviors, stout-slender morphological divergence
 occurs between related species feeding on land snails. To examine the
 genetic basis of these morphotypes, we conducted morphological analyses
 and quantitative trait locus (QTL) mapping using backcross offspring
 between the stout and slender subspecies. The morphological analyses
 showed that the width and length of the beetle body parts were correlated
 with each other; in particular, the head width and thorax length were
 strongly negatively correlated. QTL mapping showed that QTLs for head
 width and thorax length are located in close proximity to one another on
 the longest linkage group, and that they have positive and negative
 additive genetic effects. Our results suggest that the adaptive phenotypic
 sets of a wide head and short thorax and a narrow head and long thorax are
 based on the closeness of these QTLs. Morphological integration between
 the head and thorax may play an important role in the adaptive divergence
 of these beetles.
description: Phenotype and genotype
 dataThe columns are
 individual ID, head width, head length, thorax width, thorax length,
 elytron width, elytron length, sex, and loci names,
 respectively.phenotype_genotype_data.csv
DOI: 10.5061/dryad.13h2q
title: Data from: CXCL17 expression predicts poor prognosis and correlates with adverse immune infiltration in hepatocellular carcinoma

description: CXC ligand 17 (CXCL17) is a novel CXC chemokine whose clinical
 significance remains largely unknown. In the present study, we
 characterized the prognostic value of CXCL17 in patients with
 hepatocellular carcinoma (HCC) and evaluated the association of CXCL17
 with immune infiltration. We examined CXCL17 expression in 227 HCC tissue
 specimens by immunohistochemical staining, and correlated CXCL17
 expression patterns with clinicopathological features, prognosis, and
 immune infiltrate density (CD4 T cells, CD8 T cells, B cells, natural
 killer cells, neutrophils, macrophages). Kaplan-Meier survival analysis
 showed that both increased intratumoral CXCL17 (P = 0.015 for overall
 survival [OS], P = 0.003 for recurrence-free survival [RFS]) and
 peritumoral CXCL17 (P = 0.002 for OS, P&lt;0.001 for RFS) were
 associated with shorter OS and RFS. Patients in the CXCL17low group had
 significantly lower 5-year recurrence rate compared with patients in the
 CXCL17high group (peritumoral: 53.1% vs. 77.7%, P&lt;0.001,
 intratumoral: 58.6% vs. 73.0%, P = 0.001, respectively). Multivariate Cox
 proportional hazards analysis identified peritumoral CXCL17 as an
 independent prognostic factor for both OS (hazard ratio [HR] = 2.066, 95%
 confidence interval [CI] = 1.296–3.292, P = 0.002) and RFS (HR = 1.844,
 95% CI = 1.218–2.793, P = 0.004). Moreover, CXCL17 expression was
 associated with more CD68 and less CD4 cell infiltration (both
 P&lt;0.05). The combination of CXCL17 density and immune infiltration
 could be used to further classify patients into subsets with different
 prognosis for RFS. Our results provide the first evidence that
 tumor-infiltrating CXCL17+ cell density is an independent prognostic
 factor that predicts both OS and RFS in HCC. CXCL17 production correlated
 with adverse immune infiltration and might be an important target for
 anti-HCC therapies.
description: PONE-D-14-21686R1-dataAll clinicopathological features and immunostaining parameters of CXCL17 and immune cells data are in the SPSS file. The description of all the column headings has been written in the "label".PONE-D-14-21686-data.sav
DOI: 10.5061/dryad.cf6nh
title: Data from: Postnatal depression and reproductive success in modern, low-fertility contexts

description: Background and objectives: Postnatal depression (PND) presents a puzzling
 phenomenon to evolutionary anthropologists as it is highly prevalent and
 yet detrimental to child development and maternal health. Adaptive
 explanations have been proposed, but have not been tested with data that
 directly link PND to female fertility. Methodology: A survey was designed
 to gather complete reproductive histories and retrospective measures of
 PND to measure the effects of PND on fitness. Respondents were born
 between 1930 and 1967, with the majority based in the UK during their
 childrearing years. The hypothesis that PND is detrimental to fitness is
 assessed using Mann–Whitney U tests on completed fertility. Binary
 logistic regression modelling is used to test the hypothesis that PND
 reduces the likelihood of parity progression. Results: Women experiencing
 PND at their first or second birth have lower completed fertility, with
 PND at the first birth leading to lowered fertility. Logistic regression
 analyses show that this is the result of reductions in the likelihood of
 parity progression to a third birth when PND is experienced at the first
 birth or when repeat bouts occur. Conclusions and implications: Our
 results call into question adaptationist arguments, contribute to the
 growing understanding of the importance of emotional wellbeing to
 fertility decision making, and given the economic consequences of markedly
 below replacement fertility, highlight a potential new source of financial
 incentive to invest in screening and preventative measures to ensure good
 maternal mental health.
description: Retrospective assessment
 of postnatal depression Myers Burger JohnsThe data provided are
 sufficient to replicate the analysis of the effect of postnatal depression
 on completed fertility and parity progression presented in Myers, S.,
 Burger, O., and Johns, S.E. (in press) Postnatal depression and
 reproductive success in modern, low-fertility contexts. Evolution,
 Medicine, and Public Health. To preserve participant anonymity the data
 are provided in processed form and country in which child rearing occurred
 has been omitted. For a full description of the measures included please
 consult the aforementioned paper.
DOI: 10.5061/dryad.052jv
title: Data from: Demonstration of pollinator-mediated competition between two native Impatiens species, Impatiens noli-tangere and I. textori (Balsaminaceae)

description: Plant–plant interspecific competition via pollinators occurs when the
 flowering seasons of two or more plant species overlap and the pollinator
 fauna is shared. Negative sexual interactions between species
 (reproductive interference) through improper heterospecific pollen
 transfer have recently been reported between native and invasive species
 demonstrating pollination-driven competition. We focused on two native
 Impatiens species (I. noli-tangere and I. textori) found in Japan and
 examined whether pollinator-mediated plant competition occurs between
 them. We demonstrate that I. noli-tangere and I. textori share the same
 pollination niche (i.e., flowering season, pollinator fauna, and position
 of pollen on the pollinator's body). In addition, heterospecific
 pollen grains were deposited on most stigmas of both I. noli-tangere and
 I. textori flowers that were situated within 2 m of flowers of the other
 species resulting in depressed fruit set. Further, by hand-pollination
 experiments, we show that when as few as 10% of the pollen grains are
 heterospecific, fruit set is decreased to less than half in both species.
 These results show that intensive pollinator-mediated competition occurs
 between I. noli-tangere and I. textori. This study suggests that intensive
 pollinator-mediated competition occurs in the wild even when interacting
 species are both native and not invasive.
description: Tokuda et al. (raw
 data)Tokuda
 et al. (data).xlsx
DOI: 10.5061/dryad.r3761
title: Data from: Reproductive biology including evidence for superfetation in the European badger Meles meles (Carnivora: Mustelidae)

description: The reproductive biology of the European badger (Meles meles) is of wide
 interest because it is one of the few mammal species that show delayed
 implantation and one of only five which are suggested to show
 superfetation as a reproductive strategy. This study aimed to describe the
 reproductive biology of female Irish badgers with a view to increasing our
 understanding of the process of delayed implantation and superfetation. We
 carried out a detailed histological examination of the reproductive tract
 of 264 female badgers taken from sites across 20 of the 26 counties in the
 Republic of Ireland. The key results show evidence of multiple blastocysts
 at different stages of development present simultaneously in the same
 female, supporting the view that superfetation is relatively common in
 this population of badgers. In addition we present strong evidence that
 the breeding rate in Irish badgers is limited by failure to conceive,
 rather than failure at any other stages of the breeding cycle. We show few
 effects of age on breeding success, suggesting no breeding suppression by
 adult females in this population. The study sheds new light on this
 unusual breeding strategy of delayed implantation and superfetation, and
 highlights a number of significant differences between the reproductive
 biology of female Irish badgers and those of Great Britain and Swedish
 populations.
description: Irish female badgers -
 pregnancy dataweight and length of
 female badgers, along with month of capture and pregnancy information: no.
 2ry follicles, no. 3ry follicles, no. and size of blastocysts, no.
 foetuses, no. corpora lutea, progesterone level
DOI: 10.5281/zenodo.17737172
title: A value-added catalogue of neural network-based europium abundances for GALAH DR4

description: Catalogues of europium abundance predictions associated with the paper "A value-added catalogue of neural network-based europium abundances for GALAH DR4".The contents of the three catalogues (cnn_predictions.fits, korg_secondary_catalogue.fits and golden_sample.fits) are described in Appendix A in the paper.Additionally, to maximize reproducibility of our results, we provide the extrapolated normalized spectra used as input to create network predictions (normalized_spectra_prediction_targets.fits), as well as corresponding tables of stellar parameters (training_and_validation_dataset.fits) and extrapolated normalized spectra (normalized_spectra_train_val.fits) for the training/validation dataset.cnn_predictions.fits - the main catalogue, containing CNN-based predictions of [Eu/H] for 118 946 DR4-exclusive stars.korg_secondary_catalogue.fits - a secondary catalogue of [Eu/H] values synthetised with the Korg software for 2500 metal-poor DR4-exclusive stars.golden_sample.fits - a subset of high-precision [Eu/H] predictions for 54 068 DR4-exclusive stars passing strict quality and stellar parameter cuts, using Korg results for metal-poor stars and CNN predictions for all other targets.training_and_validation_dataset.fits - training and validation dataset of 52 147 stars from the DR3/DR4 crossmatch. Columns correspond to those found in the catalogues above, with the addition of 'eu_h_DR3' as the label.normalized_spectra_prediction_targets.fits - stores the 159-pixel input spectra for the DR4-exclusive stars, which can be matched by sobject_id.normalized_spectra_train_val.fits - stores the 159-pixel input spectra for the training/validation stars, which can be matched by sobject_id.

v1.1.0: Updated metadata. Updated to stricter limits for 'lower_limit_flag' in the Korg secondary catalogue. Also, added 'walkthrough_train_val.zip' which includes pre-processed train and validation data ready for use in a walkthrough notebook on GitHub (github.com/zofiakaczmarek/galah_europium). No changes to underlying data values.
DOI: 10.5281/zenodo.18386392
title: A value-added catalogue of neural network-based europium abundances for GALAH DR4

description: Catalogues of europium abundance predictions associated with the paper "A value-added catalogue of neural network-based europium abundances for GALAH DR4".The contents of the three catalogues (cnn_predictions.fits, korg_secondary_catalogue.fits and golden_sample.fits) are described in Appendix A in the paper.Additionally, to maximize reproducibility of our results, we provide the extrapolated normalized spectra used as input to create network predictions (normalized_spectra_prediction_targets.fits), as well as corresponding tables of stellar parameters (training_and_validation_dataset.fits) and extrapolated normalized spectra (normalized_spectra_train_val.fits) for the training/validation dataset.cnn_predictions.fits - the main catalogue, containing CNN-based predictions of [Eu/H] for 118 946 DR4-exclusive stars.korg_secondary_catalogue.fits - a secondary catalogue of [Eu/H] values synthetised with the Korg software for 2500 metal-poor DR4-exclusive stars.golden_sample.fits - a subset of high-precision [Eu/H] predictions for 54 068 DR4-exclusive stars passing strict quality and stellar parameter cuts, using Korg results for metal-poor stars and CNN predictions for all other targets.training_and_validation_dataset.fits - training and validation dataset of 52 147 stars from the DR3/DR4 crossmatch. Columns correspond to those found in the catalogues above, with the addition of 'eu_h_DR3' as the label.normalized_spectra_prediction_targets.fits - stores the 159-pixel input spectra for the DR4-exclusive stars, which can be matched by sobject_id.normalized_spectra_train_val.fits - stores the 159-pixel input spectra for the training/validation stars, which can be matched by sobject_id.

v1.1.0: Updated metadata. Updated to stricter limits for 'lower_limit_flag' in the Korg secondary catalogue. Also, added 'walkthrough_train_val.zip' which includes pre-processed train and validation data ready for use in a walkthrough notebook on GitHub (github.com/zofiakaczmarek/galah_europium). No changes to underlying data values.
DOI: 10.5061/dryad.1pd88
title: Data from: Rapid evolutionary loss of metal resistance revealed by hatching decades-old eggs

description: We investigated the evolutionary response of an ecologically important
 freshwater crustacean, Daphnia, to a rapidly changing toxin environment.
 From the 1920s until the 1960s, the use of leaded gasoline caused the
 aquatic concentration of Pb to increase at least 5-fold, presumably
 exerting rapid selective pressure on organisms for resistance. We
 predicted that Daphnia from this time of intense pollution would display
 greater resistance than those hatched from times of lower pollution. This
 question was addressed directly using the resurrection ecology approach,
 whereby dormant propagules from focal time periods were hatched and
 compared. We hatched several Daphnia genotypes from each of two Swiss
 lakes, during times of higher (1960s / 1980s) and lower (2000s) lead
 stress, and compared their life histories under different laboratory
 levels of this stressor. Modern Daphnia had significantly reduced fitness,
 measured as the population growth rate (λ), when exposed to lead, while
 those genotypes hatched from times of high lead pollution did not display
 this reduction. These phenotypic differences contrast with only slight
 differences measured at neutral loci. We infer that Daphnia in these lakes
 were able to rapidly adapt to increasing lead concentrations, and just as
 rapidly lost this adaptation when the stressor was removed.
description: Life history and
 microsatellite dataContains four workbooks,
 with two types of data for two lakes. Those workbooks called
 "life_table" contain the results of our Pb exposure life history
 experiment. Each row represents one individual, which was kept in its own
 jar. Columns identify each clone, clone age, and Pb treatment. The columns
 labeled with day numbers give the number of live births counted on that
 day. Deaths are recorded as NAs: the first NA appears on the day that an
 animal was found dead. The workbooks called "msats" contain the
 microsatellite data retrieved from sedimentary eggs. Each row represents
 one egg. A column gives the year the egg was produced, and for Greifensee,
 another column gives the species identity. The remainder of the columns
 give the diploid microsatellite genotype of each egg. The names of the
 columns correspond to the names of the markers.Data_archive.xlsx
DOI: 10.5061/dryad.708
title: Data from: Complexity of the likelihood surface for a large DNA dataset

description: Point of View
description: Salter Data
 SetSalter.nexus
DOI: 10.5061/dryad.th8b5
title: Data from: Circadian rhythms vary over the growing season and correlate with fitness components

description: Circadian clocks have evolved independently in all three domains of life,
 suggesting that internal mechanisms of time-keeping are adaptive in
 contemporary populations. However, the performance consequences of either
 discrete or quantitative clock variation have rarely been tested in field
 settings. Clock sensitivity of diverse segregating lines to the
 environment remains uncharacterized as do the statistical genetic
 parameters that determine evolutionary potential. In field studies with
 Arabidopsis thaliana, we found that major perturbations to circadian cycle
 length (referred to as clock period) via mutation reduce both survival and
 fecundity. Subtler adjustments via genomic introgression of naturally
 occurring alleles indicated that clock periods slightly &gt;24 hrs
 were adaptive, consistent with prior models describing how well the timing
 of biological processes is adjusted within a diurnal cycle (referred to as
 phase). In segregating recombinant inbred lines (RILs), circadian phase
 varied up to two hours across months of the growing season, and both
 period and phase expressed significant genetic variances. Performance
 metrics including developmental rate, size, and fruit set were described
 by principal components (PC) analyses and circadian parameters correlated
 with the first PC, such that period lengths slightly &gt;24 hrs were
 associated with improved performance in multiple RIL sets. These
 experiments translate functional analyses of clock behavior performed in
 controlled settings to natural ones, demonstrating that quantitative
 variation in circadian phase is highly responsive to seasonally variable
 abiotic factors. The results expand upon prior studies in controlled
 settings, showing that discrete and quantitative variation in clock
 phenotypes correlate with performance in nature.
description: Trait means for
 circadian NILs, mutants and RIL setsGenotypic means for all
 traits and PCAs.Rubin et al. Molecular Ecology
 Data.xlsx