cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7485158
title: Elastic strain effects on wave scattering: implications for coda wave interferometry (CWI) (accompanies Azzola et al. (2020)).

description: Data necessary to reproduce the figures of <i>Elastic strain effects on wave scattering : implications for CWI</i> (Azzola et al., 2020), accepted in <i>Journal of Geophysical Research: Solid Earth</i>. <br>- Scaterring properties and mechanical characterization of the sample from measurements obtained in the laboratory and during simulations. <br>- Coda Wave Interferometry data during repeated mechanical loading of an Au4G sample, in the laboratory and during simulations replicating the conditions of the laboratory experiments. <br>
DOI: 10.7284/101086
title: Multibeam Echosounder data collected during research cruise MGL0910 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484945
title: Codes.csv

description: The study was underpinned by gender socialization and intra-household bargaining theories that reviewed reproductive, productive and community roles in the face of climate change variability among communities surrounding Lake Mauro National Park, Uganda. The study reviewed the effect of climate change on men and women’s gender roles using a pragmatic research paradigm based on a thematic review model.
DOI: 10.6084/m9.figshare.7485155
title: Supplemental tables T1S and T2S

description: Supplemental tables T1S and T2S
DOI: 10.6084/m9.figshare.7485035
title: Data for "Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH) - Uncertainty quantification of geometric rupture risk parameters"

description: This data set contains all 121 aneurysm dome geometries (in STL file format) that were used for calculation of geometric parameters analysed in the publication "Multiple Aneurysms AnaTomy CHallenge 2018 (MATCH) - Uncertainty quantification of geometric rupture risk parameters"
DOI: 10.7284/101087
title: Singlebeam Echosounder data collected during research cruise MGL0910 using a Knudsen 3260 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484945.v2
title: Codes.csv

description: The study was underpinned by gender socialization and intra-household bargaining theories that reviewed reproductive, productive and community roles in the face of climate change variability among communities surrounding Lake Mauro National Park, Uganda. The study reviewed the effect of climate change on men and women’s gender roles using a pragmatic research paradigm based on a thematic review model.
DOI: 10.6084/m9.figshare.7485155.v1
title: Supplemental tables T1S and T2S

description: Supplemental tables T1S and T2S
DOI: 10.6084/m9.figshare.7484942
title: SI: MD and QM/MM data for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"

description: Suporting MD and QM/MM setup data and analysis for "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"<br>- MD-QMMM-InputStructuresandTopologies:containing all topologies (*.top), starting coordinates (*.crd), toplogy creation files ([xleap].in), and structures including atomic point charges (*.mol) for all simulations<br>- MDcontainingtruncated trajectories (.nc), ptraj analysis files: average structures (.pdb), rmsd, rmsf, hbonding, energetic analysis files<br>- umbrellacontaining truncated trajectories, output, and analysis files (wham etc) for umbrella sampling <br>- QMMMumbrellacontaining truncated trajectories, output, and analysis files (wham etc) for QM/MM umbrella sampling<br>
DOI: 10.6084/m9.figshare.7484945.v1
title: Codes.csv

description: The study was underpinned by gender socialization and intra-household bargaining theories that reviewed reproductive, productive and community roles in the face of climate change variability among communities surrounding Lake Mauro National Park, Uganda. The study reviewed the effect of climate change on men and women’s gender roles using a pragmatic research paradigm based on a thematic review model.
DOI: 10.7284/101096
title: TSG (Thermosalinograph) data collected during research cruise MGL0910 using a Sea-Bird SBE-21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484930
title: SI: DFT structures and outputs for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"

description: DFT structures and (truncated) gaussian output files for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"<br>- cartesian coordinate files (.xyz)- gaussian output files (.log)
DOI: 10.6084/m9.figshare.7484930.v1
title: SI: DFT structures and outputs for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"

description: DFT structures and (truncated) gaussian output files for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"<br>- cartesian coordinate files (.xyz)- gaussian output files (.log)
DOI: 10.6084/m9.figshare.7484942.v1
title: SI: MD and QM/MM data for publication "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"

description: Suporting MD and QM/MM setup data and analysis for "Ammonium complexes of orthoester cryptands are inherently dynamic and adaptive"<br>- MD-QMMM-InputStructuresandTopologies:containing all topologies (*.top), starting coordinates (*.crd), toplogy creation files ([xleap].in), and structures including atomic point charges (*.mol) for all simulations<br>- MDcontainingtruncated trajectories (.nc), ptraj analysis files: average structures (.pdb), rmsd, rmsf, hbonding, energetic analysis files<br>- umbrellacontaining truncated trajectories, output, and analysis files (wham etc) for umbrella sampling <br>- QMMMumbrellacontaining truncated trajectories, output, and analysis files (wham etc) for QM/MM umbrella sampling<br>
DOI: 10.7284/100947
title: Expendable Probe data collected during research cruise MGL1002 using a Sippican MK21 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484903
title: Data Conservation Research Priorities for the Cape Floristic Region

description: <b>Data set 1 Questionnaire and invitation letter.pdf</b><br>This file includes the questionnaire to which people working in the Cape Floristic Region in the conservation sphere could submit up to ten research questions. The form also asked for some bibliographic information on the respondents professional lives. The respondents submitted anonymously. The questionnaire was delivered by google survey.<br> Also included is the letter sent by email to people working in conservation in the Cape Floristic Region inviting them to submit research questions they consider important to be answered in order to ensure the conservation of this region.<br><b>Data set 2 Respondent profile randomised anonymised</b><br><br>This data set contains anonymous bibliographic data of the respondents professional profile in conservation. This information is separated from the submitted questions to ensure questions cannot be linked back to respondents with an identifiable profile <br><b>Data set 3 Original questions</b><br>The priority conservation research questions submitted by respondents is listed with the final question derived through an inductive process. The original questions were edited before listing: 1. to omit questions with Yes or No answers that could not be reinterpreted as a research question2. to split complex questions made up of several separate questions3. to correct some spelling or grammatical errors<br><b>Data set 4 Word frequency in original Qs</b><br>The original questions submitted by respondents were searched for how many time certain words were mentioned in the questions. In cases were there are several forms of one conceptual word the core of such word was searched for e.g. 'agric' for agriculture, agricultural. Where two words with the same root implied different things then the full words were searched for separately e.g. development and developer. The words were grouped into broad categories to derive an indication of where the respondents' conservation interests lay.<br>
DOI: 10.6084/m9.figshare.7484906
title: cf_driver_preference_18

description: Data and analysis code for article "Explaining Driver Headway Preferences with Driving Skill Inventory and Field Measurements"
DOI: 10.7284/100948
title: GNSS (Global Navigation Satellite System) data collected during research cruise MGL1002 using a C&C C-Nav 2000 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484906.v1
title: cf_driver_preference_18

description: Data and analysis code for article "Explaining Driver Headway Preferences with Driving Skill Inventory and Field Measurements"
DOI: 10.6084/m9.figshare.7484873
title: Example Figshare for Institutions poster templates

description: PSD file templates to customise Figshare for Institutions posters.
DOI: 10.7284/100959
title: Gravimeter data collected during research cruise MGL1002 using a Bell BGM-3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100951
title: Gyrocompass data collected during research cruise MGL1002 using a Kongsberg Simrad GC80 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484813
title: Supplementary Material for: Expression of Cell-Penetrating Peptides Fused to Protein Cargo

description: Cell-penetrating peptides (CPPs) are short peptides that can cross cell membranes. CPPs enable the delivery of biomolecules into cells and can act as drug-delivery vectors. Because recombinant production of CPPs as fusions to protein “cargo” leads to low yields for some CPP-cargo fusions, approaches to enhance the recombinant expression of peptide-cargo fusions need to be identified. We optimized expression conditions in <i>Escherichia coli</i> for fusions of CPPs (SynB, histatin-5, and MPG) to the cargo proteins biotin carboxyl carrier protein, maltose-binding protein, and green fluorescent protein. We used Western blotting to evaluate induction temperatures of 37, 30, and 20°C, and induction times of 6, 10, and 24 h. Glutathione-S-transferase was incorporated as a fusion partner to improve expression. In general, expression at 37°C for 6 and 10 h led to the highest levels of expression for the different CPP-cargo constructs. The improvements in expression of CPP-cargo fusions will allow higher yields of CPP-cargo fusions for studies of their translocation into cells.
DOI: 10.6084/m9.figshare.7484813.v1
title: Supplementary Material for: Expression of Cell-Penetrating Peptides Fused to Protein Cargo

description: Cell-penetrating peptides (CPPs) are short peptides that can cross cell membranes. CPPs enable the delivery of biomolecules into cells and can act as drug-delivery vectors. Because recombinant production of CPPs as fusions to protein “cargo” leads to low yields for some CPP-cargo fusions, approaches to enhance the recombinant expression of peptide-cargo fusions need to be identified. We optimized expression conditions in <i>Escherichia coli</i> for fusions of CPPs (SynB, histatin-5, and MPG) to the cargo proteins biotin carboxyl carrier protein, maltose-binding protein, and green fluorescent protein. We used Western blotting to evaluate induction temperatures of 37, 30, and 20°C, and induction times of 6, 10, and 24 h. Glutathione-S-transferase was incorporated as a fusion partner to improve expression. In general, expression at 37°C for 6 and 10 h led to the highest levels of expression for the different CPP-cargo constructs. The improvements in expression of CPP-cargo fusions will allow higher yields of CPP-cargo fusions for studies of their translocation into cells.
DOI: 10.7284/100949
title: INS (Inertial Navigation System) data collected during research cruise MGL1002 using a Kongsberg Seapath 200 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/100950
title: INS (Inertial Navigation System) data collected during research cruise MGL1002 using a Applanix POS/MV-320 V3 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484705
title: Scripts and programs to estimates nucleotide diversity in the Zosterops borbonicus genome.

description: Scripts and programs to estimates nucleotide diversity in the Zosterops borbonicus genome. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.6084/m9.figshare.7484741
title: Supplementary Material for: A Promising New Approach for the Treatment of Inflammatory Pain: Transfer of Stem Cell-Derived Tyrosine Hydroxylase-Positive Cells

description: <b><i>Objectives:</i></b> The appearance of endogenous tyrosine hydroxylase-positive cells (TH<sup>+</sup> cells) in collagen-induced arthritis was associated with an anti-inflammatory effect. Here we investigated putative anti-inflammatory and antinociceptive effects of the transfer of induced, bone marrow stem cell-derived TH<sup>+</sup> cells (iTH<sup>+</sup> cells) on murine antigen-induced arthritis (AIA). <b><i>Methods:</i></b> Bone marrow-derived stem cells were differentiated into iTH<sup>+</sup> cells. These cells were transferred to mice immunized against methylated bovine serum albumin (mBSA) 2 days before AIA was induced by injection of mBSA into one knee joint. In AIA control mice and iTH<sup>+</sup>-treated mice the severity of AIA, pain-related behavior, humoral and cellular responses, and the invasion of macrophages into the dorsal root ganglia were assessed. <b><i>Results:</i></b> The intravenous transfer of iTH<sup>+</sup> cells before AIA induction did not cause a sustained suppression of AIA severity but significantly reduced inflammation-evoked pain-related behavior. The iTH<sup>+</sup> cells used for transfer exhibited enormous production of interleukin-4. A major difference between AIA control mice and iTH<sup>+</sup>-treated AIA mice was a massive invasion of the dorsal root ganglia by iNOS-negative, arginine 1-positive macrophages corresponding to an M2 phenotype. The differences in other cellular and humoral immune parameters such as release of cytokines from stimulated lymphocytes between AIA control mice and iTH<sup>+</sup>-treated mice were small. <b><i>Conclusions:</i></b> The transfer of iTH<sup>+</sup> cells may cause a long-lasting reduction of arthritis-induced pain even if it does not ameliorate inflammation. The invasion of M2 macrophages into the dorsal root ganglia is likely to be an important mechanism of antinociception.
DOI: 10.7284/100958
title: Magnetometer data collected during research cruise MGL1002 using a Geometrics G-882 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484702
title: Scripts and programs to perform whole genome alignment between Zosterops borbonicus and Taeniopygia guttata genome.

description: Scripts and programs to perform whole genome alignment between Zosterops borbonicus and Taeniopygia guttata genome. See in Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.6084/m9.figshare.7484705.v1
title: Scripts and programs to estimates nucleotide diversity in the Zosterops borbonicus genome.

description: Scripts and programs to estimates nucleotide diversity in the Zosterops borbonicus genome. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.6084/m9.figshare.7484699
title: Scripts to compute transposable elements (TE) and GC content in Zosterops borbonicus genome

description: Scripts to compute transposable elements (TE) and GC content in Zosterops borbonicus genome. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution .
DOI: 10.6084/m9.figshare.7484702.v1
title: Scripts and programs to perform whole genome alignment between Zosterops borbonicus and Taeniopygia guttata genome.

description: Scripts and programs to perform whole genome alignment between Zosterops borbonicus and Taeniopygia guttata genome. See in Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.6084/m9.figshare.7484741.v1
title: Supplementary Material for: A Promising New Approach for the Treatment of Inflammatory Pain: Transfer of Stem Cell-Derived Tyrosine Hydroxylase-Positive Cells

description: <b><i>Objectives:</i></b> The appearance of endogenous tyrosine hydroxylase-positive cells (TH<sup>+</sup> cells) in collagen-induced arthritis was associated with an anti-inflammatory effect. Here we investigated putative anti-inflammatory and antinociceptive effects of the transfer of induced, bone marrow stem cell-derived TH<sup>+</sup> cells (iTH<sup>+</sup> cells) on murine antigen-induced arthritis (AIA). <b><i>Methods:</i></b> Bone marrow-derived stem cells were differentiated into iTH<sup>+</sup> cells. These cells were transferred to mice immunized against methylated bovine serum albumin (mBSA) 2 days before AIA was induced by injection of mBSA into one knee joint. In AIA control mice and iTH<sup>+</sup>-treated mice the severity of AIA, pain-related behavior, humoral and cellular responses, and the invasion of macrophages into the dorsal root ganglia were assessed. <b><i>Results:</i></b> The intravenous transfer of iTH<sup>+</sup> cells before AIA induction did not cause a sustained suppression of AIA severity but significantly reduced inflammation-evoked pain-related behavior. The iTH<sup>+</sup> cells used for transfer exhibited enormous production of interleukin-4. A major difference between AIA control mice and iTH<sup>+</sup>-treated AIA mice was a massive invasion of the dorsal root ganglia by iNOS-negative, arginine 1-positive macrophages corresponding to an M2 phenotype. The differences in other cellular and humoral immune parameters such as release of cytokines from stimulated lymphocytes between AIA control mice and iTH<sup>+</sup>-treated mice were small. <b><i>Conclusions:</i></b> The transfer of iTH<sup>+</sup> cells may cause a long-lasting reduction of arthritis-induced pain even if it does not ameliorate inflammation. The invasion of M2 macrophages into the dorsal root ganglia is likely to be an important mechanism of antinociception.
DOI: 10.7284/100955
title: Meteorological Station data collected during research cruise MGL1002 using a RM Young 26700 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484693
title: Scripts and datasets to compute divergence dates using mitohcondrial genomes in Zosterops.

description: Scripts and datasets to compute divergence dates using mitohcondrial genomes in Zosterops. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.6084/m9.figshare.7484696
title: Supplementary Material for: JAK2/STAT5 Pathway Mediates Prolactin-Induced Apoptosis of Lactotropes

description: Prolactinomas are increasingly viewed as a “problem of signal transduction.” Consequently, the identification of factors and signaling pathways that control lactotrope cell turnover is needed in order to encourage new therapeutic developments. We have previously shown that prolactin (PRL) acts as a proapoptotic and antiproliferative factor on lactotropes, maintaining anterior pituitary cell homeostasis, which contrasts with the classical antiapoptotic and/or proliferative actions exerted by PRL in most other target tissues. We aimed to investigate the PRLR-triggered signaling pathways mediating these nonclassical effects of PRL in the pituitary. Our results suggest that (i) the PRLR/Jak2/STAT5 pathway is constitutively active in GH3 cells and contributes to PRL-induced apoptosis by increasing the Bax/Bcl-2 ratio, (ii) PRL inhibits ERK1/2 and Akt phosphorylation, thereby contributing to its proapoptotic effect, and (iii) the PI3K/Akt pathway participates in the PRL-mediated control of lactotrope proliferation. We hypothesize that the alteration of PRL actions in lactotrope homeostasis due to the dysregulation of any of the mechanisms of actions described above may contribute to the pathogenesis of prolactinomas.
DOI: 10.6084/m9.figshare.7484696.v1
title: Supplementary Material for: JAK2/STAT5 Pathway Mediates Prolactin-Induced Apoptosis of Lactotropes

description: Prolactinomas are increasingly viewed as a “problem of signal transduction.” Consequently, the identification of factors and signaling pathways that control lactotrope cell turnover is needed in order to encourage new therapeutic developments. We have previously shown that prolactin (PRL) acts as a proapoptotic and antiproliferative factor on lactotropes, maintaining anterior pituitary cell homeostasis, which contrasts with the classical antiapoptotic and/or proliferative actions exerted by PRL in most other target tissues. We aimed to investigate the PRLR-triggered signaling pathways mediating these nonclassical effects of PRL in the pituitary. Our results suggest that (i) the PRLR/Jak2/STAT5 pathway is constitutively active in GH3 cells and contributes to PRL-induced apoptosis by increasing the Bax/Bcl-2 ratio, (ii) PRL inhibits ERK1/2 and Akt phosphorylation, thereby contributing to its proapoptotic effect, and (iii) the PI3K/Akt pathway participates in the PRL-mediated control of lactotrope proliferation. We hypothesize that the alteration of PRL actions in lactotrope homeostasis due to the dysregulation of any of the mechanisms of actions described above may contribute to the pathogenesis of prolactinomas.
DOI: 10.6084/m9.figshare.7484699.v1
title: Scripts to compute transposable elements (TE) and GC content in Zosterops borbonicus genome

description: Scripts to compute transposable elements (TE) and GC content in Zosterops borbonicus genome. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution .
DOI: 10.6084/m9.figshare.7484693.v1
title: Scripts and datasets to compute divergence dates using mitohcondrial genomes in Zosterops.

description: Scripts and datasets to compute divergence dates using mitohcondrial genomes in Zosterops. See Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution.<br>
DOI: 10.7284/100944
title: Multibeam Echosounder data collected during research cruise MGL1002 using a Kongsberg EM122 instrument system onboard the platform RV Marcus G. Langseth

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7484666
title: Chronograms (phylogeny indicating divergence dates) of 30 birds species.

description: This include all the chronograms analyses in Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution .<br>Thy include all the calibration set (1 to 4) and datasets (1 to 10) analysed.
DOI: 10.6084/m9.figshare.7484666.v1
title: Chronograms (phylogeny indicating divergence dates) of 30 birds species.

description: This include all the chronograms analyses in Leroy et al. A bird's white-eye shot: looking down on a new avian sex chromosome evolution .<br>Thy include all the calibration set (1 to 4) and datasets (1 to 10) analysed.