cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h31dh73
title: Data from: Sea buckthorn berries (Hippophae rhamnoides L.) predict size and composition of a great tit population (Parus major L.).

description: In seasonal environments variation in food abundance in the non-breeding
 season is thought to affect songbird population dynamics. In a unique
 tit-sea buckthorn berry system we can estimate the berry abundance and
 both the tit consumption and population dynamics. Six hundred nest boxes
 were available to great and blue tits (Cyanistes caeruleus) for breeding
 in spring and roosting in winter. We followed the dynamics including the
 recapture histories of individually marked great tits from 2008-2013. In
 each year we estimated 1) the winter sea buckthorn berry availability, 2)
 an index of berry consumption in December based on the colour of the
 faeces of roosting birds, 3) the number of breeding great and blue tits,
 4) both recapture probability and the return rate of the great tits and 5)
 immigration rates. December berry abundance positively predicted the
 number of breeding pairs of both species in the subsequent season and
 great tit return rates in the second half of the winter. There was support
 for a sex specific berry effect on the adult return rate in the great tit:
 female return rate was associated less strongly to berry abundance than
 male return rate. This skewed the sex ratio of the local breeders in the
 following breeding season. Intriguingly, annual berry consumption in
 December was not related to berry abundance, and individuals consuming
 more berries tended to have slightly lower return rates. Reproductive rate
 was not related to berry abundance. There was hardly support for a
 relation between immigration rates of first year breeders and berry
 abundance. Taken together these results imply that berry stock not only
 affected population size but also the population composition through sex
 specific exchange with the surroundings. Since population density covaried
 with berry abundance, density dependent effects provide an alternative
 explanation for the patterns observed.
description: Tinbergen_et_al_2019_data_seabuckthorn_berries_predict_tit_numbersThe datafile is an excel file containing 9 sheets with the data used for the article. Please read the accompanying text file "README.txt" for more information on the data sheets and the meaning of the columns
DOI: 10.5061/dryad.vt66f3m
title: Data from: Why cooperation is not running away

description: A growing number of experimental and theoretical studies show the
 importance of partner choice as a mechanism to promote the evolution of
 cooperation, especially in humans. In this paper, we focus on the question
 of the precise quantitative level of cooperation that should evolve under
 this mechanism. When individuals compete to be chosen by others, their
 level of investment in cooperation evolves towards higher values, a
 process called competitive altruism, or runaway cooperation. Using a
 classic adaptive dynamics model, we first show that, when the cost of
 changing partner is low, this runaway process can lead to a profitless
 escalation of cooperation. In the extreme, when partner choice is entirely
 frictionless, cooperation even increases up to a level where its cost
 entirely cancels out its benefit. That is, at evolutionary equilibrium,
 individuals gain the same payoff than if they had not cooperated at all.
 Second, importing models from matching theory in economics we, however,
 show that, when individuals can plastically modulate their choosiness in
 function of their own cooperation level, partner choice stops being a
 runaway competition to outbid others, and becomes a competition to form
 the most optimal partnerships. In this case, when the cost of changing
 partner tends toward zero, partner choice leads to the evolution of the
 socially optimum level of cooperation. This last result could explain the
 observation that human cooperation seems to be often constrained by
 considerations of social efficiency.
description: Python code for the
 individual-based simulationsPython code for the
 individual-based simulations in the paper "Why cooperation is not
 running away", published in the Journal of Evolutionary Biology,
 2019, by Félix Geoffroy, Nicolas Baumard and Jean-Baptiste André.
 https://doi.org/10.1111/jeb.13508 If more details are needed on the code,
 please contact the first author of the publication at
 felix.geoffroy.fr@gmail.com.cooperation_runaway_code.zip
DOI: 10.5061/dryad.g0j48c7
title: Data from: Contrasting diversity patterns of breeding Anatidae in the Northern and Southern Hemispheres

description: For sustaining ecosystem functions and services, environmental
 conservation strategies increasingly target to maintain the multiple
 facets of biodiversity, such as functional diversity (FD) and phylogenetic
 diversity (PD), not just taxonomic diversity (TD). However, spatial
 mismatches among these components of biodiversity can impose challenges
 for conservation decisions. Hence, understanding the drivers of
 biodiversity is critical. Here, we investigated the global distribution
 patterns of TD, FD and PD of breeding Anatidae. Using null models, we
 clarified the relative importance of mechanisms that influence Anatidae
 community. We also developed Random Forest models to evaluate the effects
 of environmental variables on the Anatidae TD, FD and PD. Our results
 showed that geographic variation in Anatidae diversity is hemispheric
 rather than latitudinal. In the species-rich Northern Hemisphere (NH), the
 three diversity indices decreased with latitude within the tropical zone
 of the NH, but increased in the temperate zone reaching a peak at
 44.5–70.0° N, where functional and phylogenetic clustering was a
 predominant feature. In the Southern Hemisphere (SH), Anatidae diversity
 increased poleward and a tendency to over-dispersion was common. In NH,
 productivity seasonality and temperature in the coldest quarter were the
 most important variables. Productivity seasonality was also the most
 influential predictor of SH Anatidae diversity, along with peak
 productivity. These findings suggested that seasonality and productivity,
 both consistent with the energy-diversity hypothesis, interact with the
 varying histories to shape the contrasting hemispheric patterns of
 Anatidae diversity. PD and FD under-dispersion, widespread across the
 species-rich, seasonally productive mid to high latitudes of the NH,
 reflects a rapid evolutionary radiation and resorting associated with
 Pleistocene cycles of glaciation. The SH continents (and southern Asia)
 are characterised by a widespread tendency towards PD and FD
 over-dispersion, with their generally species-poor communities comprising
 proportionately more older lineages in thermally more stable but less
 predictably productive environments.
description: Supplementary
 TableS2_S4Three matrices, S2
 “Species-trait matrix”, S3 “Species-community matrix” and S4 “Biodiversity
 indices – community – environmental variable matrix”
DOI: 10.5061/dryad.qn275kk
title: Data from: Trends in educational and wealth inequalities in adult tobacco use in Nepal 2001-2016: secondary data analyses of four Demographic and Health Surveys

description: Objective: To measure trends in socio-economic inequalities tobacco use in
 Nepal Setting: Adults interviewed during house-to-house surveys
 Participants: Women (15-45 years) and men (15-49 years) surveyed in four
 Nepal Demographic and Health Surveys done in 2001, 2006, 2011 and 2016.
 Outcome measure: Current tobacco use (in any form) Results: The prevalence
 of tobacco use for men declined from 66% in 2001 to 55% in 2016, and
 declined from 29% to 8.4% among women. Across both education and wealth
 quintiles for both men and women, the prevalence of tobacco use generally
 declines with increasing education or wealth. We found persistently larger
 absolute inequalities by education than by wealth among men. Among women
 we also found larger educational than wealth related gradients, but both
 declined over time. For men, slope index of inequality for education was
 larger than for wealth (44% vs. 26% in 2001 respectively and changed very
 little over time. For women, slope index of inequality for both education
 and wealth were similar in magnitude to men, but decreased substantially
 between 2001 and 2016 (from 44% to 16% for education; from 37% to 16% for
 wealth). Women had a larger relative index of inequality than men for both
 education (6.5 vs. 2.0 in 2001 and wealth (4.8 vs. 1.5 in 2001), and
 relative inequality increased between 2001 and 2016 for women (from 6.5 to
 16.0 for education; from 4.8 to 12.0 for wealth). Conclusion: Increasing
 relative inequalities indicates sub-optimal reduction in tobacco use among
 the vulnerable groups suggesting that they should be targeted to improve
 tobacco control.
description: m2001men's file Nepal
 DHS 2001m2006men's file Nepal
 DHS 2006m2011men's file Nepal
 DHS 2011m2016men's file Nepal
 DHS 2016w2001Women's file Nepal
 DHS 2001w2006Women's file Nepal
 DHS 2006w2011Women's file Nepal
 DHS 2011w2016Women's file Nepal
 DHS 2016Dryad Data
 CitationsDRYADcitation.txt
DOI: 10.5061/dryad.3264k4v
title: Data from: The features of muscle activity during chair standing and sitting motion in submerged condition

description: This study aimed to measure muscle activity and motion kinematics during
 chair-based exercises under submerged and non-submerged conditions. Twelve
 healthy men performed chair-based standing and sitting movements. Surface
 electrodes were attached at the tibialis anterior, gastrocnemius, rectus
 femoris, biceps femoris, rectus abdominis, and erector spinae. The ankle,
 knee, and hip joint angles and forward inclination angle of the trunk
 segment in the sagittal plane were calculated. The mean muscle activities
 during both movements in the submerged condition for the entire motion
 were lower than those in the non-submerged condition except in the
 tibialis anterior and biceps femoris during the sitting movement (in the
 standing exercise, rectus femoris: 14.1% and 5.2%; and erector spinae:
 18.3% and 13.6% in non-submerged and submerged conditions, respectively;
 and in the sitting exercise, rectus femoris: 12.1% and 4.5% and erector
 spinae: 12.9% and 9.9% in the non-submerged and submerged conditions,
 respectively). However, the integrated muscle activity in submerged
 conditions was similar or higher to that in non-submerged conditions
 during both movements, except for the rectus femoris. This was mainly due
 to the increased duration of motion (44.3% and 39.9% longer for standing
 and sitting exercises in submerged conditions, respectively, compared with
 non-submerged conditions; p &lt; 0.01 for both). The hip joint flexion
 at the beginning and end of movement and forward inclination angles of the
 trunk segment at the beginning of the movement in the submerged condition
 were larger than those in the non-submerged condition during both
 movements (hip: 126.1° and 111.5° at the beginning, 182.3° and 178.4° at
 the end and trunk: 2.7° and 17.4° at the beginning in non-submerged and
 submerged conditions for the standing exercise, respectively; hip: 182.4°
 and 178.0° at the beginning, 125.9° and 111.1° at the end and trunk: 2.2°
 and 16.9° at the end in non-submerged and submerged conditions for the
 sitting exercise, respectively). Reduced or similar muscle activity but
 similar or higher muscular effort was observed in the submerged condition
 for all the muscles except the rectus femoris, with the upper body
 inclined forward. These findings could have beneficial implications for
 the prescription of exercise and rehabilitation regimens.
description: Data_for_publicationData for: The features of muscle activity during chair standing and sitting motion in submerged conditiondata.xlsx
DOI: 10.5061/dryad.bs1g7p8
title: Data from: Weighing density and kinship: aggressive behavior and time allocation in fire salamander (Salamandra infraimmaculata)

description: Kin-biased behavior (that is responding differentially to kin and non-kin)
 is thought to be adaptive in many social interactions. One example of this
 kin bias is behaving less aggressively toward a relative than a
 non-relative, a behavior which yields inclusive fitness benefits. However,
 data are lacking about the ability of animals to weigh their preference
 for kinship and the density of conspecifics simultaneously and to respond
 accordingly. Fire salamanders (Salamandra infraimmaculata) larviposit in
 high densities in ponds. Thus, larvae of different females confront
 competition and predation by other larvae. We studied whether larvae
 prefer their kin over particular density or vice versa. We experimentally
 used a transparent glass aquarium with inner chambers to test the
 responses of a focal larva toward its siblings and non-siblings.
 Specifically, we quantified the time a focal larva spent near its siblings
 or non-siblings, presented in varying densities, and the aggression level
 it demonstrated. We found that focal larvae spent more time near
 non-siblings if non-sibling and sibling groups were of equal density. The
 focal larvae were also more aggressive toward non-siblings. The results
 may be explained by the cannibalistic nature of these larvae: high density
 may provide more opportunities for food, especially when non-siblings are
 present. Further explanations for these findings may include other
 advantages of staying in a larger group and/or the stronger olfactory and
 visual stimulation offered by groups compared to a single individual.
 These findings suggest that larvae make differential responses toward
 conspecifics depending simultaneously on the level of relatedness and the
 density of the group. Such responses have important implications for
 social - aggregation decisions and may especially affect the fitness of
 cannibalistic species.
description: Berkowic & Markman
 Plos One 2019 data
DOI: 10.5061/dryad.6nk2n87
title: Data from: Primary care clinics can be a source of exposure to virulent Clostridium (now Clostridioides) difficile: an environmental screening study of hospitals and clinics in Dallas-Fort Worth region

description: C. difficile is an endospore-forming pathogen, which is becoming a common
 cause of microbial health-care associated gastrointestinal disease in the
 United States. Both healthy and symptomatic patients can shed C. difficile
 spores into the environment, which can survive for long periods, being
 resistant to desiccation, heat, and disinfectants. In healthcare
 facilities, environmental contamination with C. difficile is a major
 concern as a potential source of exposure to this pathogen and risk of
 disease in susceptible patients. Although hospital-acquired infection is
 recognized, community-acquired infection is an increasingly recognized
 health problem. Primary care clinics may be a significant source of
 exposure to this pathogen; however, there are limited data about presence
 of environmental C. difficile within clinics. To address the potential for
 primary care clinics as a source of environmental exposure to virulent C.
 difficile, we measured the frequency of environmental contamination with
 spores in clinic examination rooms and hospital rooms in Dallas-Fort Worth
 (DFW) area of Texas. The ribotypes and presence of toxin genes from some
 environmental isolates were compared. Our results indicate primary care
 clinics have higher frequencies of contamination than hospitals. After
 notification of the presence of C. difficile spores in the clinics and an
 educational discussion to emphasize the importance of this infection and
 methods of infection prevention, environmental contamination in clinics
 was reduced on subsequent sampling to that found in hospitals. Thus,
 primary care clinics can be a source of exposure to virulent C. difficile,
 and recognition of this possibility can result in improved infection
 prevention, potentially reducing community-acquired C. difficile
 infections and subsequent disease.
description: Supporting
 dataExcel files containing
 data used in publication
DOI: 10.5061/dryad.6dh476h
title: Data from: Divergence in drought-response traits between sympatric species of Mimulus

description: Differential adaptation to local environmental conditions is thought to be
 an important driver of speciation. Plants, whose sedentary lifestyle
 necessitates fine-tuned adaptation to edaphic conditions such as water
 availability, are often distributed based on these conditions. Populations
 occupying water-limited habitats may employ a variety of strategies,
 involving numerous phenotypes, to prevent and withstand desiccation. In
 sympatry, two closely related Mimulus species – M. guttatus and M. nasutus
 – occupy distinct microhabitats that differ in seasonal water
 availability. In a common garden experiment, we characterized natural
 variation within and between sympatric M. guttatus and M. nasutus in the
 ability to successfully set seed under well-watered and drought
 conditions. We also measured key phenotypes for drought adaptation,
 including developmental timing, plant size, flower size, and stomatal
 density. Consistent with their microhabitat associations in nature, M.
 nasutus set seed much more successfully than M. guttatus under
 water-limited conditions. This divergence in reproductive output under
 drought was due to differences in mortality after the onset of flowering,
 with M. nasutus surviving at a much higher rate than M. guttatus. Higher
 seed set in M. nasutus was mediated, at least in part, by a plastic
 increase in the rate of late-stage development (i.e., fruit maturation),
 consistent with the ability of this species to inhabit more ephemeral
 habitats in the field. Our results suggest adaptation to water
 availability may be an important factor in species maintenance of these
 Mimulus taxa in sympatry.
description: Morphological,
 Developmental, and Fitness Measurements of Mimulus guttatus and M. nasutus
 under drought and control conditions19 inbred lines of
 Mimulus were grown in the greenhouse under control conditions and
 conditions simulating terminal drought. Morphological, developmental, and
 fitness measurements of Mimulus guttatus and M. nasutus under drought and
 control conditions found in the 'Raw Data' tab. Randomized
 location of each replicate found in 'Randomization' tab.
 Location of each flat within the greenhouse used - translated to X, Y, and
 Z positions in 'Raw Data' found in 'Flat Location'
 tab. Schematic of plant line positions found in 'Flat Contents'
 tab. Calculation of flat average moisture content found in 'Water
 Content' tab.Drydown Spring
 2017.xlsx
DOI: 10.5061/dryad.tj22pv6
title: Data from: Genome-wide evidence supports mitochondrial relationships and pervasive parallel phenotypic evolution in open-habitat chats

description: In wheatears and related species (‘open-habitat chats’), molecular
 phylogenetics has led to a comprehensively revised understanding of
 species relationships and species diversity. Phylogenetic analyses have
 suggested that, in many cases, phenotypic similarities do not reflect
 species’ relationships, revealing traditionally defined genera as
 non-monophyletic. This led to the suggestion of pervasive parallel
 evolution of open-habitat chats’ plumage coloration and ecological
 phenotypes. However, to date, the molecular evidence for the phylogenetic
 relationships among open-habitat chats is mainly limited to mitochondrial
 DNA. Here, we assessed whether the mitochondrial relationships are
 supported by genome-wide data. To this end, we reconstructed the species
 tree among 14 open-habitat chat taxa using multi-species coalescent
 analyses based on ~1’300 SNPs. Our results confirm previous ones based
 chiefly on mitochondrial DNA; notably the paraphyly of the Oenanthe lugens
 complex and the clustering of individual species formerly placed in the
 genera Cercomela and Myrmecocichla within Oenanthe. Since several variable
 morphological and ecological characteristics occur in multiple places
 across the open-habitat chat phylogeny, our study consolidates the
 evidence for pervasive parallel evolution in the plumage coloration and
 ecology of open-habitat chats.
description: ddRAD-sequencing read
 dataThis file contains
 individual files with forward (*.1.fq.gz) and reverse (*.2.fq.gz)
 RAD-sequencing read data for each individual/speciesddRAD-reads_fastq.zip
DOI: 10.5061/dryad.m4s0m08
title: Data from: eDNA surveys to detect species at very low densities: a case study of European carp eradication in Tasmania, Australia

description: 1. Eradications of invasive species are usually expensive and difficult to
 conduct. Knowing when to declare an eradication successful requires
 distinguishing between failed detection of the target species due to
 imperfect sensitivity of the detection method and true species absence.
 This is difficult because the sensitivities of many detection methods are
 unknown. 2. Environmental DNA (eDNA) methods can be used to detect species
 by analysing DNA present in environmental samples. eDNA has been promoted
 as a particularly sensitive and cost-effective way to detect species at
 low densities and, importantly, the sensitivity of eDNA surveys can be
 quantified. Nevertheless, the effort and costs involved in detecting
 species at extremely low densities, such as required during eradication,
 have not been previously calculated. 3. We evaluated the sensitivity of
 eDNA surveys in detecting the invasive European carp, Cyprinus carpio, in
 two lakes in Tasmania, Australia, one in which carp have been eradicated
 and a second in which carp are currently being eradicated. We determined
 the sampling effort and associated cost required to detect the species at
 very low density in these lakes. 4. While our eDNA survey detected the
 current low density carp population present in in Lake Sorell, we show
 that an exponential increase in sampling effort and associated cost will
 be required to confidently detect the species as the population declines.
 Similarly, while our eDNA survey corroborated the species absence from
 Lake Crescent, our detection confidence was low. We quantify the survey
 effort and financial investment required to confidently establish
 eradication success in Lake Crescent. Synthesis and applications: 5.
 Estimating the eDNA survey effort and cost required to detect species at a
 given density will enable practitioners to make informed decisions on the
 feasibility of implementing such surveys. Quantifying the sensitivity of
 eDNA surveys will also inform the confidence practitioners should place in
 the results of eDNA detection surveys to ensure appropriate management
 actions are implemented and provide a suitable stopping point at which to
 confidently declare eradication success.09-Jul-2019
description: Lake Ginninderra eDNA
 resultsIndividual samples,
 water volume filtered, DNA aliquots, PCR replicates, and target DNA
 detection and concentration resultsLake Crescent and Lake
 Sorell eDNA resultsIndividual samples,
 water volume filtered, DNA aliquots, PCR replicates, and target DNA
 detection and concentration results
DOI: 10.15468/dl.p5e2u5
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Tamias senex [GBIF Backbone Taxonomy], Neotamias senex [GBIF Backbone Taxonomy], Tamias senex senex [GBIF Backbone Taxonomy])",
 "StateProvince is one of (Oregon)",
 "Geometry POLYGON((-121.2816 44.84125,-121.91685 44.51308,-122.13947 43.41103,-121.21644 43.36368,-121.19473 44.8451,-121.2816 44.84125))"
 ]
 }
 ]
}

 The dataset includes 60 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001840-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.