cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.96096t0
title: Data from: Common latitudinal gradients in functional richness and functional evenness across marine and terrestrial systems

description: Functional diversity is an important aspect of biodiversity, but its
 relationship to species diversity in time and space is poorly understood.
 Here we compare spatial patterns of functional and taxonomic diversity
 across marine and terrestrial systems to identify commonalities in their
 respective ecological and evolutionary drivers. We placed species-level
 ecological traits into comparable multidimensional frameworks for two
 model systems, marine bivalves and terrestrial birds, and used global
 species-occurrence data to examine the distribution of functional
 diversity with latitude and longitude. In both systems, tropical faunas
 show high total functional richness but low functional evenness (i.e. the
 tropics contain a highly skewed distribution of species among functional
 groups). Functional groups that persist toward the poles become more
 uniform in species richness, such that functional richness declines and
 functional evenness rises with latitude in both systems. Temperate
 assemblages are more functionally even than tropical assemblages
 subsampled to temperate levels of species richness, suggesting that high
 species richness in the tropics reflects a high degree of ecological
 specialization within a few functional groups and/or factors that favor
 high recent speciation or reduced extinction rates in those groups.
description: Schumm_etal_PRSLB_dataPlease refer to README
DOI: 10.5061/dryad.3jk4mj2
title: Data from: Transgenic mice overexpressing miR-137 in the brain show schizophrenia-associated behavioral deficits and transcriptome profiles

description: Schizophrenia is a psychiatric disorder characterized by positive and
 negative symptoms and cognitive deficits. The exact cause of schizophrenia
 is still unknown, but substantial evidence indicates that it has a genetic
 component. Genome wide association studies demonstrate miR-137 variant is
 a risk factor for schizophrenia. However, the direct relationship between
 the pathophysiology of schizophrenia and the dosage of miR-137 remains
 unclear. Therefore, in this study, we generated transgenic mice
 overexpressing miR-137 (miR-137 Tg mice) with the neuron-specific Thy-1
 promoter and examined schizophrenia-related phenotypes in these mice.
 Overexpression of miR-137 was observed in various brain regions of the
 miR-137 Tg mice, with down-regulation of putative miR-137 targets. MiR-137
 Tg mice showed sensory gating deficits in a prepulse inhibition test,
 social deficits in a sociability and social novelty test, and cognitive
 deficits in a novel object recognition test. Interestingly, the
 predicted-altered pathways of the medial prefrontal cortex of miR-137 Tg
 mice were partially overlapped with those of the dorsolateral prefrontal
 cortex in postmortem brain of patients who died in equal to or less than 4
 years after initial diagnosis of schizophrenia in published data. These
 results suggest that overexpression of miR-137 in the whole brain induces
 the several phenotypes that are relevant to aspects of psychiatric
 disorder, such as schizophrenia. Based on these findings, miR-137 Tg mice
 may have the potential to become a useful tool in researching the
 pathophysiology of psychiatric disorder.
description: Raw data of miR-137 Tg
 micemiR-137 Tg mice
 data.Raw
 data for dyrad.xlsx
DOI: 10.5061/dryad.hg4279m
title: Data from: Acoustic accelerometry reveals diel activity patterns in premigratory Port Jackson sharks

description: Distinguishing the factors that influence activity within a species
 advances understanding of their behaviour and ecology. Continuous
 observation in the marine environment is not feasible but biotelemetry
 devices provide an opportunity for detailed analysis of movements and
 activity patterns. This study investigated the detail that calibration of
 accelerometers measuring root mean square (RMS) acceleration with video
 footage can add to understanding the activity patterns of male and female
 Port Jackson sharks (Heterodontus portusjacksoni) in a captive
 environment. Linear regression was used to relate RMS acceleration output
 to time-matched behaviour captured on video to quantify diel activity
 patterns. To validate captive data, diel patterns from captive sharks were
 compared with diel movement data from free-ranging sharks using passive
 acoustic tracking. The RMS acceleration data showed captive sharks
 exhibited nocturnal diel patterns peaking during the late evening before
 midnight and decreasing before sunrise. Correlation analysis revealed that
 captive animals displayed similar activity patterns to free-ranging
 sharks. The timing of wild shark departures for migration in the late
 breeding season corresponded with elevated diel activity at night within
 the captive individuals, suggesting a form of migratory restlessness in
 captivity. By directly relating RMS acceleration output to activity level,
 we show that sex, time of day and sex-specific seasonal behaviour all
 influenced activity levels. This study contributes to a growing body of
 evidence that RMS acceleration data is a promising method to determine
 activity patterns of cryptic marine animals and can provide more detailed
 information when validated in captivity.
description: Data_K1Data file contains wild and captive Port Jackson shark activity data and metadataDataK1.zip
DOI: 10.5061/dryad.8mv00jv
title: Data from: Three-dimensionally preserved soft-tissues and calcareous hexactins in a Silurian sponge: implications for early sponge evolution.

description: Sponges (Porifera), as one of the earliest-branching animal phyla, are
 crucial for understanding early metazoan phylogeny. Recent studies of
 Lower Palaeozoic sponges have revealed a variety of character states and
 combinations unknown in extant taxa, challenging our views of early sponge
 morphology. The Herefordshire Konservat-Lagerstätte yields an abundant,
 diverse sponge fauna with three-dimensional preservation of spicules and
 soft tissue. Carduispongia pedicula gen. et sp. nov. possesses a single
 layer of hexactine spicules arranged in a regular orthogonal network. This
 spicule type and arrangement is characteristic of the reticulosans, which
 have traditionally been interpreted as early members of the extant
 siliceous class Hexactinellida. However, the unusual preservation of the
 spicules of C. pedicula reveals an originally calcareous composition,
 which would be diagnostic of the living class Calcarea. The soft tissue
 architecture closely resembles the complex sylleibid or leuconid structure
 seen in some modern calcareans and homoscleromorphs. This combination of
 features strongly supports a skeletal continuum between primitive
 calcareans and hexactinellid siliceans, indicating that the last common
 ancestor of Porifera was a spiculate, solitary, vasiform animal with a
 thin skeletal wall.
description: Virtual Reconstruction
 of Carduispongia pedicula holotype (OUMNH C.36010)3D Virtual
 Reconstruction of OUMNH C.36010, Carduispongia pedicula holotype.
 VAXML/STL format. From synchrotron scan data.VAXML_Model_OUMNH_C_36010.zipVirtual Reconstruction of Carduispongia pedicula paratype (OUMNH C.36062)3D Virtual Reconstruction of OUMNH C.36010, Carduispongia pedicula holotype. VAXML/STL format. From physical-optical tomography data.VAXML_Model_OUMNH_C_36062.zipTomograms of Carduispongia pedicula paratype (OUMNH C.36062)Tomograms of OUMNH C.36062, Carduispongia pedicula. BMP format. Colour photographic images from physical-optical tomography, registered and cropped. Images are captured at 225 pixels/mm. Spacing between slices is 30 microns.Tomograms_OUMNH_C_36062.zipTomograms of Carduispongia pedicula holotype (OUMNH C.36010) 1/3Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 1 of 3 (Tomograms 0000-0499)Tomograms_OUMNH_C_36010_Part_1_of_3.zipTomograms of Carduispongia pedicula holotype (OUMNH C.36010) 2/3Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 2 of 3 (Tomograms 0500-0999)Tomograms_OUMNH_C_36010_Part_2_of_3.zipTomograms of Carduispongia pedicula holotype (OUMNH C.36010) 3/3Tomograms of OUMNH C.36010, Carduispongia pedicula hotype. BMP format. Synchrotron phase-contrast tomograms (see main manuscript for details). Part 3 of 3 (Tomograms 1000-1559)Tomograms_OUMNH_C_36010_Part_3_of_3.zip
DOI: 10.60905/csmmgx
title: Registro Toma 3ra Toma Barrial

description: &lt;p&gt;Memorias de la Toma Barrial con batucada, muralismo, espacios de reflexi��n y futbol popular, realizada en la 80 con la 80, barrio Robledo, convocada por el Movimiento Barrial Zona 2 en alianza con diversas organizaciones locales.&lt;/p&gt;
description: <br> Inicio y ascenso de la Paro Nacional #28A. 28 de abril al 28 de julio de 2021
DOI: 10.5061/dryad.8k3d81r
title: Data from: Mysuru City Bird Atlas (2014–16): a systematic study of birds across space and time

description: The Mysuru City Bird Atlas is an ambitious volunteer project to map the
 birds of an entire city – the first systematic effort of its kind in
 India. Mysuru city was gridded into a set of square cells, and each cell
 was surveyed for birds in the winter and in the summer of 2014, 2015 and
 2016. The goal of this effort was to assess the distribution and abundance
 of the birds of Mysuru such that the accumulated information can be used
 to assess seasonal changes in avifauna as well as to examine the
 relationship between birds and their habitat in an urban setting. In this
 article, we present selected outcomes, including maps as well as raw
 comparisons of abundance across the two seasons and the three years of the
 atlas surveys. Some of the results recapture broadly understood phenomena,
 such as long-distance migration resulting in seasonal differences in bird
 communities and species richness. Other results are suggestive of
 previously undescribed patterns, such as seasonal local movements. Further
 learnings from the project include areas of improvement in Atlas design
 and the identification of more sophisticated approaches to data analysis.
 Taken as a whole, the information generated through the Mysuru City Bird
 Atlas can be used as a baseline against which long-term change in avifauna
 can be assessed.
description: Mysuru City Bird Atlas
 (2014-2016) raw data Raw data from the Mysuru
 City Bird Atlas (2014-2016). Full description in the accompanying article
 in Indian Birds journal, volume 15, number 3. MBA final
 dataset.csv
DOI: 10.5517/ccrs9tm
title: CCDC 708561: Experimental Crystal Structure Determination

description: Related Article: D.G.Billing, A.Lemmerer|2009|CrystEngComm|11|1549|doi:10.1039/b819455f
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrs9vn
title: CCDC 708562: Experimental Crystal Structure Determination

description: Related Article: D.G.Billing, A.Lemmerer|2009|CrystEngComm|11|1549|doi:10.1039/b819455f
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.18376338
title: Tracer-based practical relations for the estimation of bedload transport in gravel-bed streams

description: The dataset shared in this repository corresponds to the article "Tracer-based practical relations for the estimation of bedload transport in gravel-bed streams"
DOI: 10.5281/zenodo.18376339
title: Tracer-based practical relations for the estimation of bedload transport in gravel-bed streams

description: The dataset shared in this repository corresponds to the article "Tracer-based practical relations for the estimation of bedload transport in gravel-bed streams"
DOI: 10.5517/ccdc.csd.cc2j23c3
title: CCDC 2325724: Experimental Crystal Structure Determination

description: Related Article: Takayayuki Kataoka, Kotaro Matsumura, Kosuke Ono, Yoshitaka Tsuchido, Hidetoshi Kawai |2025|ChemPlusChem|90|e202400612|doi:10.1002/cplu.202400612
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j23d4
title: CCDC 2325725: Experimental Crystal Structure Determination

description: Related Article: Takayayuki Kataoka, Kotaro Matsumura, Kosuke Ono, Yoshitaka Tsuchido, Hidetoshi Kawai |2025|ChemPlusChem|90|e202400612|doi:10.1002/cplu.202400612
description: Related Article: Takayayuki Kataoka, Kotaro Matsumura, Kosuke Ono, Yoshitaka Tsuchido, Hidetoshi Kawai|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2j23b2
title: CCDC 2325723: Experimental Crystal Structure Determination

description: Related Article: Takayayuki Kataoka, Kotaro Matsumura, Kosuke Ono, Yoshitaka Tsuchido, Hidetoshi Kawai |2025|ChemPlusChem|90|e202400612|doi:10.1002/cplu.202400612
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.t7m9806
title: Data from: Proportional mixture of two rarefaction/extrapolation curves to forecast biodiversity changes under landscape transformation

description: Progressive habitat transformation causes global changes in landscape
 biodiversity patterns, but can be hard to quantify.
 Rarefaction/extrapolation approaches can quantify within‐habitat
 biodiversity, but may not be useful for cases in which one habitat type is
 progressively transformed into another habitat type. To quantify
 biodiversity patterns in such transformed landscapes, we use Hill numbers
 to analyse individual‐based species abundance data or replicated,
 sample‐based incidence data. Given biodiversity data from two distinct
 habitat types, when a specified proportion of original habitat is
 transformed, our approach utilises a proportional mixture of two
 within‐habitat rarefaction/extrapolation curves to analytically predict
 biodiversity changes, with bootstrap confidence intervals to assess
 sampling uncertainty. We also derive analytic formulas for assessing
 species composition (i.e. the numbers of shared and unique species) for
 any mixture of the two habitat types. Our analytical and numerical
 analyses revealed that species unique to each habitat type are the most
 important determinants of landscape biodiversity patterns.
description: Spider_Abundance_DataSpider species absolute abundances (i.e., individuals) of 85 spider species collected in original open-forest stands and transformed closed-forest stands in the Bavarian Forest National Park (Thorn et al. 2016). See the main text and Appendix S3 of Chao et al. (2019) for analysis details.Bird_Incidence_DataBird species incidence-based frequencies of 22 bird species collected in unlogged original forests (18 plots) and logged transformed forests (16 plots) in the Bavarian Forest National Park (Thorn et al. 2016). See Appendix S4 of Chao et al. (2019) for analysis details.
DOI: 10.5281/zenodo.18392419
title: Place Glacier Smart Ablation Stake Data (2024)

description: Supplementary data for for publication: "Satellite telemetry of surface ablation to inform spatial melt modelling and event-scale monitoring, Place Glacier, Canada" by A.R. Bevington, B. Menounos, and M. Ednie. 2026. The Cryosphere. https://egusphere.copernicus.org/preprints/2025/egusphere-2025-2702/
DOI: 10.5281/zenodo.18392420
title: Place Glacier Smart Ablation Stake Data (2024)

description: Supplementary data for for publication: "Satellite telemetry of surface ablation to inform spatial melt modelling and event-scale monitoring, Place Glacier, Canada" by A.R. Bevington, B. Menounos, and M. Ednie. 2026. The Cryosphere. https://egusphere.copernicus.org/preprints/2025/egusphere-2025-2702/
DOI: 10.5061/dryad.4j2c7h6
title: Data from: Expected genotype quality and diploidized marker data from genotyping-by-sequencing of Urochloa spp. tetraploids

description: Although genotyping-by-sequencing (GBS) is a well-established marker
 technology in diploids, the development of best practices for tetraploid
 species is a topic of current research. We determined the theoretical
 relationship between read depth and the phred-scaled probability of
 genotype misclassification, conditioned on the true genotype, which we
 call Expected Genotype Quality (EGQ). If the GBS method has 0.5% allelic
 error, then 17 reads are needed to classify simplex tetraploids as
 heterozygous with 95% accuracy (EGQ = 13) compared with 61 reads to
 determine allele dosage. We developed an R script to convert tetraploid
 GBS data in Variant Call Format (VCF) into diploidized genotype calls and
 applied it to 267 interspecific hybrids of the tetraploid forage grass
 Urochloa (syn. Brachiaria). When reads were aligned to a mock reference
 genome created from GBS data of the U. brizantha cultivar ‘Marandu’,
 25,678 bi-allelic SNPs were discovered, compared to approximately 3000
 SNPs when aligning to the closest true reference genomes, Setaria viridis
 and S. italica. Cross-validation revealed that missing genotypes were
 imputed by the Random Forest method with a median accuracy of 0.85,
 regardless of heterozygote frequency. Using the Urochloa spp. hybrids, we
 illustrated how filtering samples based only on GQ creates genotype bias;
 a depth threshold based on EGQ is also needed, regardless of whether
 genotypes are called using a diploidized or allele dosage model.
description: VCF for Urochloa spp.
 hybridsCreated from GBS data
 with GATK, using an Urochloa mock reference genome for
 alignmentUrochloa.vcf.gzList of 267 hybrids included in the analysisUrochloaHybrids.csv
DOI: 10.5061/dryad.jh050b4
title: Data from: Influences of two coexisting endosymbionts, CI-inducing Wolbachia and male-killing Spiroplasma, on the performance of their host Laodelphax striatellus (Hemiptera: Delphacidae)

description: The small brown planthopper Laodelphax striatellus (Hemiptera:
 Delphacidae) is reported to have the endosymbiont Wolbachia, which shows a
 strong cytoplasmic incompatibility (CI) between infected males and
 uninfected females. In the 2000s, female-biased L. striatellus populations
 were found in Taiwan, and this sex ratio distortion was the result of
 male-killing induced by the infection of another endosymbiont,
 Spiroplasma. Spiroplasma infection is considered to negatively affect both
 L. striatellus and Wolbachia because the male-killing halves the offspring
 of L. striatellus and hinders the spread of Wolbachia infection via CI.
 Spiroplasma could have traits that increase the fitness of infected L.
 striatellus and/or coexisting organisms because the coinfection rates of
 Wolbachia and Spiroplasma were rather high in some areas. In this study,
 we investigated the influences of the infection of these two endosymbionts
 on the development, reproduction and insecticide resistance of L.
 striatellus in the laboratory. Our results show that the single infection
 of Spiroplasma had a negative influence on the fertility of L.
 striatellus, while the double infection state had no significant
 influence. At late nymphal and adult stages, the abundance of Spiroplasma
 was lower in the double infection state than in the single infection
 state. In the double infection state, the reduction of Spiroplasma density
 may be caused by competition between the two endosymbionts, and the
 negative influence of Spiroplasma on the fertility of host may be
 relieved. The resistance of L. striatellus to four insecticides was
 compared among different infection states of endosymbionts, but
 Spiroplasma infection did not contribute to increased insecticide
 resistance. Because positive influences of Spiroplasma infection were not
 found in terms of the development, reproduction and insecticide resistance
 of L. striatellus, other factors improving the fitness of
 Spiroplasma-infected L. striatellus may be related to the high frequency
 of double infection in some L. striatellus populations.
description: Group1_performanceNymphal duration, adult longevity, and fertility data of Group 1.Group2_performanceNymphal duration, adult longevity, and fertility data of Group 2.Spiroplasma densityInfection density of Spiroplasma (copy/sample)
DOI: 10.5061/dryad.8mg5702
title: Data from: Wetland environmental bioreactor system contributes to the decomposition of cellulose

description: Recently, numerous species of aquatic invertebrates inhabiting wetlands
 have been shown to possess endogenous cellulase, following the discovery
 that termites have cellulase genes encoded in their own genome rather than
 relying on symbiotic bacteria for decomposing cellulose. Wetlands have
 been empirically shown to play an important role in the decomposition of
 land-originating hard-to-degrade polysaccharides such as cellulose.
 However, the mechanism that connects the cellulase producer and the
 wetlands remains unknown, which makes it very difficult to evaluate the
 ecological function of wetlands. Here we found that a macrobenthic
 bivalve, Corbicula japonica, secretes its cellulase to the wetland
 sediment. Secreted cellulases are immobilized in the components of the
 sediment. Moreover, adding cellulose or glucose to C. japonica could
 trigger its cellulase secretion level. These findings suggest a novel
 wetland cellulose decomposition mechanism. The decomposition ability of
 wetlands was previously ascribed only to microbes and/or invertebrates
 that contain cellulases. Our findings suggest that benthic animals supply
 wetlands with their enzymes as decomposition agents, while wetland
 sediments serve as immobilization scaffolds for the enzymes. This system,
 which was named by us an “environmental bioreactor system”, could provide
 a key function in wetlands.
description: Original Data
 setFig.1A, Fig.2,
 Fig.3C&D, Fig.4, Fig.5 and Fig.6Data.xlsx