cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.hxhxrs
title: Occurrence Download

description: A dataset containing 590 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bisporella Sacc."
 ]
}

 The dataset includes 590 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0421928-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uj99kj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ceratostylis vonroemeri J.J.Sm."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132931-230224095556074/datasets/export for details.
DOI: 10.15468/dl.rsrg17
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is SILENE-FAUNE-PACA - DREAL_PACA_-_N2000_-_Parc_Naturel_Régional_de_Camargue_2017_12_18"
 ]
}

 The dataset includes 369 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022959-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49vafp
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Occurrence evidence"
 ]
 },
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amandava amandava (Linnaeus, 1758)",
 "Year 1972-2022"
 ]
}

 The dataset includes 26 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272925-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cntjch
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plethodon savannah Highton, 1989",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year is greater than or equal to 2000",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022047-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d925v4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Rosa wichuraiana Andr"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069187-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yn67fs
title: Occurrence Download

description: A dataset containing 6184 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhabdophis tigrinus (Boie, 1826)"
 ]
}

 The dataset includes 6184 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214694-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kfgpc6
title: Occurrence Download

description: A dataset containing 157 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aspidoscelis maslini (Fritts, 1969)"
 ]
}

 The dataset includes 157 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0132980-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpxwgj
title: Occurrence Download

description: A dataset containing 10733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spodoptera exigua (Hübner, 1808)"
 ]
}

 The dataset includes 10733 records from 196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082903-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksd8ub
title: Occurrence Download

description: A dataset containing 239921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "IucnRedListCategory is NT"
 ]
}

 The dataset includes 239921 records from 949 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0367066-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tq6kpt
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eupatorium capillifolium",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026153-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17807556
title: barcodes_reference.tsv

description: Accessory file for ENA Project: PRJEB102638.

Enhancing the specificity of oncogenic pathway inhibition in cancer cells improves both efficacy and tolerability of anti-cancer therapies. Hyperactivated Wnt signaling is a key driver in cancers such as CRC and PDAC, but its direct inhibition is limited by severe toxicities due to the importance of Wnt signalling in normal tissues, particularly the gut and bone. To address this challenge, we designed bispecific antibodies that selectively target surface proteins of oncogenic signaling pathways in tumor cells while sparing normal cells. Using single-cell technologies, we identified tumor-specific receptors, including TROP2, which are absent in cells reliant on Wnt signaling. Our TROP2-targeted anti-Frizzled bispecific antibody effectively inhibited Wnt signaling in preclinical models with minimal effect on normal intestinal tissue. Expanding this approach, we developed tumor-targeted, toxicity-sparing bispecific antibodies against FGFR1 and EGFR. This work establishes a framework for designing targeted therapeutics that minimize cell-type-specific toxicities in cancer and other diseases.
DOI: 10.5281/zenodo.17807557
title: barcodes_reference.tsv

description: Accessory file for ENA Project: PRJEB102638.

Enhancing the specificity of oncogenic pathway inhibition in cancer cells improves both efficacy and tolerability of anti-cancer therapies. Hyperactivated Wnt signaling is a key driver in cancers such as CRC and PDAC, but its direct inhibition is limited by severe toxicities due to the importance of Wnt signalling in normal tissues, particularly the gut and bone. To address this challenge, we designed bispecific antibodies that selectively target surface proteins of oncogenic signaling pathways in tumor cells while sparing normal cells. Using single-cell technologies, we identified tumor-specific receptors, including TROP2, which are absent in cells reliant on Wnt signaling. Our TROP2-targeted anti-Frizzled bispecific antibody effectively inhibited Wnt signaling in preclinical models with minimal effect on normal intestinal tissue. Expanding this approach, we developed tumor-targeted, toxicity-sparing bispecific antibodies against FGFR1 and EGFR. This work establishes a framework for designing targeted therapeutics that minimize cell-type-specific toxicities in cancer and other diseases.
DOI: 10.25345/c5rj49783
title: MassIVE MSV000100091 - Proteomics data for Amaranthus palmeri and Glycine max
title: Proteomics data for Amaranthus palmeri and Glycine max
DOI: 10.5281/zenodo.17807467
title: Social Inclusion Composite Index: Dataset and R Code (2009–2024)

description: This repository contains the dataset and analysis code used to construct a composite indicator of social inclusion for 60 countries over the period 2009–2024.The dataset is compiled from World Bank open data and includes seven indicators covering income inequality, poverty, education, labour participation, healthcare access, and social policy quality. Missing values were handled using linear interpolation and forward/backward filling.

The repository includes:





cleaned and merged panel dataset (60 countries × 16 years = 960 observations);




source code for data preprocessing, normalization, PCA, and K-means clustering;




results of principal component analysis and clustering used to evaluate cross-country social inclusion patterns.



The uploaded materials support reproducibility of the model described in the accompanying coursework on composite indicator construction.
DOI: 10.5281/zenodo.17807468
title: Social Inclusion Composite Index: Dataset and R Code (2009–2024)

description: This repository contains the dataset and analysis code used to construct a composite indicator of social inclusion for 60 countries over the period 2009–2024.The dataset is compiled from World Bank open data and includes seven indicators covering income inequality, poverty, education, labour participation, healthcare access, and social policy quality. Missing values were handled using linear interpolation and forward/backward filling.

The repository includes:





cleaned and merged panel dataset (60 countries × 16 years = 960 observations);




source code for data preprocessing, normalization, PCA, and K-means clustering;




results of principal component analysis and clustering used to evaluate cross-country social inclusion patterns.



The uploaded materials support reproducibility of the model described in the accompanying coursework on composite indicator construction.
DOI: 10.5066/p13tbwnz
title: Subtidal Ecosystems at San Nicolas Island, California (ver. 1.1, December 2025)

description: The monitoring program at San Nicolas Island (SNI) was conceived in anticipation of the potential reintroduction of southern sea otters to the island. Subtidal monitoring was initiated in autumn of 1980 at six sampling sites positioned around the island to sample communities exposed to a range of wave exposures and other oceanographic conditions. Three additional sites were subsequently added. Following their reintroduction in 1987, the sea otter population at the island remained low for several years but 154 were counted there in 2019.

There are nine permanent sites that are monitored on rocky reefs around San Nicolas Island. Six of these (Nav Fac, West End Urchin, West End Kelp, West Dutch Harbor, East Dutch Harbor, and Daytona) were installed and first sampled in 1980. The two West End sites are physically joined, with the end bolt of the main 50 m transect of the Urchin site being also the beginning of the Kelp site’s main transect. The Dutch Harbor sites are not contiguous but are on adjacent rock reefs separated by approximately 140 m of sand. A seventh site, Sandy Cove, was added in 1986. Data collected from the project’s inception in October 1980 to October 2011 were published in Kenner et al. (2013). In fall 2014, two additional sites were added that are contiguous with two of the original sites. North Nav Fac was installed with the end of its main transect line sharing the beginning of the Nav Fac site and South Daytona was added in a similar relation to the Daytona Site. This yielded eight paired sites or four “supersites” in addition to Sandy Cove. Most of the data is collected separately on the individual sites but can be pooled at the larger supersite level. The original sites consisted of a 50-m main transect with five 10-m x 2-m benthic band transects (swaths), ten 1-m2 random point contact (RPC) quadrats and five 50-m fish transects. The two new sites do not have fish transects associated with them but are otherwise identical. Temperature data and sea urchin and other invertebrate size data are collected at the supersite level. Sites have usually been sampled twice a year, in spring and fall since their installation but have been missed several times due to weather, budgetary constraints, or mechanical issues with boats.
DOI: 10.71738/n9tr-ba81
title: HTP Whole Blood RNAseq (2020)
title: HTP-RNAseq-WholeBlood-2020

description: Analysis of steady-state mRNA levels in whole blood of euploid controls and participants with trisomy 21
DOI: 10.15468/dl.n5asqa
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paranectriella",
 "HasCoordinate is true"
 ]
}

 The dataset includes 27 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026154-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.45knwf
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia esula",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026155-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13978869
title: Onco-360 | DATASUS | INCA | CNES | SIOPS
DOI: 10.34740/kaggle/dsv/13978890
title: Indonesian Hoax News Dataset
DOI: 10.7910/dvn/ux25wu
title: Sentinel Plots for On-Farm Bean Disease Assessment: A Strategic Tool to Guide Breeding for Smallholder Agriculture

description: Biotic constraints limit bean productivity across all growing regions, with most severe impact in tropical developing countries. 
Evaluation for disease resistance can be influenced by environment, management, and evaluation expertise, which imposes challenges for the development of better varieties with improved resistance on-farm. To increase data reliability, CIAT developed and implemented a coordinated strategy to capture disease severity information in the Lwengo district in Uganda where bean is widely cultivated by small farmers and disease pressure is high. We merged capacity from CIAT-Palmira, CIAT-Kawanda, and NARO-NaCRRI to define the best conditions and genotypes to generate meaningful phenotypic information.&lt;br&gt;&lt;br&gt; Methodology:A bean nursery (Meso and Andean) representing elite breeding lines, resistant parents, local varieties, some international differentials, and disease resistant and susceptible checks, was sown in two farms at Lwengo. CIAT’s evaluation 1-9 scale was used to evaluate severity for all diseases observed, considering three evaluations on leaves and one on pods. The maximum score on leaves was used to calculate cumulative probabilities considering three phenotypic categories: resistant, intermediate, and susceptible.
DOI: 10.15468/dl.phcf66
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zythia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026156-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.88ccma
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euphorbia myrsinites",
 "GadmGid is one of (USA.6_1, USA.17_1, USA.27_1, USA.28_1, USA.32_1, USA.35_1, USA.37_1, USA.42_1, USA.44_1, USA.51_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2014",
 "Month is greater than or equal to January",
 "Month is less than or equal to December"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026158-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a26970094
title: Multibeam sonar data of icebergs from LeConte Glacier, southeast Alaska, June 2022 - July 2023

description: These data include processed multibeam sonar and drone-derived three-dimensional point clouds of icebergs surveyed between 2022 and 2023 in Xeitl Geeyí’ (LeConte Bay), Southeast Alaska. Thirteen grounded icebergs were mapped using Norbit iWBMS and Winghead i77h/i80s sonars, and one recently capsized floating iceberg was mapped using a DJI Air 2S drone. The datasets were collected to quantify submarine iceberg morphology and surface roughness as part of a broader effort to improve understanding of ice–ocean interactions at near-vertical ice-ocean boundaries. The methods and analyses are described in Cohen et al. (submitted in 2025), "Characterizing submarine ice roughness at icebergs from a temperate tidewater glacier", under review in the Journal of Glaciology. All data are georeferenced to World Geodetic System 1984 (WGS 84) and Universal Transverse Mercator Zone 8 N (meters in easting/northing).
DOI: 10.15468/dl.qe9pdz
title: Occurrence Download

description: A dataset containing 27449 species occurrences available in GBIF matching the query:
{
 "and" : [
 "SpeciesKey is Vespa velutina",
 "Year is one of (2024, 2025)",
 "HasCoordinate is true",
 "Geometry POLYGON((4.0 44.0, 12.0 44.0, 12.0 50.0, 4.0 50.0, 4.0 44.0))"
 ]
}

 The dataset includes 27449 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026159-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25836584
title: Discovery of common molecular signatures and drug repurposing for COVID-19/Asthma comorbidity: ACE2 and multi-partite networks

description: Angiotensin-converting enzyme 2 (ACE2) is identified as the functional receptor for severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the causative agent of the ongoing global coronavirus disease-2019 (COVID-19) pandemic. This study aimed to elucidate potential therapeutic avenues by scrutinizing approved drugs through the identification of the genetic signature associated with SARS-CoV-2 infection in individuals with asthma. This exploration was conducted through an integrated analysis, encompassing interaction networks between the ACE2 receptor and common host (co-host) factors implicated in COVID-19/asthma comorbidity. The comprehensive analysis involved the identification of common differentially expressed genes (cDEGs) and hub-cDEGs, functional annotations, interaction networks, gene set variation analysis (GSVA), gene set enrichment analysis (GSEA), and module construction. Interaction networks were used to identify overlapping disease modules and potential drug targets. Computational biology and molecular docking analyzes were utilized to discern functional drug modules. Subsequently, the impact of the identified drugs on the expression of hub-cDEGs was experimentally validated using a mouse model. A total of 153 cDEGs or co-host factors associated with ACE2 were identified in the COVID-19 and asthma comorbidity. Among these, seven significant cDEGs and proteins – namely, <i>HRAS, IFNG, JUN, CDH1, TLR4, ICAM1</i>, and <i>SCD</i>—were recognized as pivotal host factors linked to ACE2. Regulatory network analysis of hub-cDEGs revealed eight top-ranked transcription factors (TFs) proteins and nine microRNAs as key regulatory factors operating at the transcriptional and post-transcriptional levels, respectively. Molecular docking simulations led to the proposal of 10 top-ranked repurposable drug molecules (Rapamycin, Ivermectin, Everolimus, Quercetin, Estradiol, Entrectinib, Nilotinib, Conivaptan, Radotinib, and Venetoclax) as potential treatment options for COVID-19 in individuals with comorbid asthma. Validation analysis demonstrated that Rapamycin effectively inhibited <i>ICAM1</i> expression in the HDM-stimulated mice group (<i>p</i> &lt; 0.01). This study unveils the common pathogenesis and genetic signature underlying asthma and SARS-CoV-2 infection, delineated by the interaction networks of ACE2-related host factors. These findings provide valuable insights for the design and discovery of drugs aimed at more effective therapeutics within the context of lung disease comorbidities.
DOI: 10.7289/v5w66j21
title: NOAA GOES-R Series Advanced Baseline Imager (ABI) Level 2 Rainfall Rate Quantitative Precipitation Estimation (RRQPE)

description: The GOES-R Advanced Baseline Imager (ABI) Rainfall Rate Quantitative Precipitation Estimate (RRQPE) product contains an image with pixel values identifying the rainfall rate. The product includes data quality information that provides an assessment of the rainfall rate data values for on-earth pixels. The units of measure for the rainfall rate value is millimeters per hour. The product image is produced on the ABI fixed grid at 2 km resolution for the Full Disk coverage region. Product data is produced for geolocated source data to local zenith angles of 90 degrees for both daytime and nighttime conditions.
DOI: 10.6084/m9.figshare.24421540
title: Functional annotation of the methanogen and potentially syntrophic MAGs from lake sediments.

description: Functional annotation of the methanogen and potentially syntrophic MAGs from lake sediments. Annotation was generated by the the IMGAP annotation pipeline (https://doi.org/10.1093/nar/gky901).
DOI: 10.6084/m9.figshare.24421540.v1
title: Functional annotation of the methanogen and potentially syntrophic MAGs from lake sediments.

description: Functional annotation of the methanogen and potentially syntrophic MAGs from lake sediments. Annotation was generated by the the IMGAP annotation pipeline (https://doi.org/10.1093/nar/gky901).