cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6078/d1vb0g
title: Data and code associated with: Two annual cycles of the Pacific cold tongue under orbital precession

description: The Pacific cold tongue annual cycle in sea surface temperature is
 presumed to be driven by Earth’s axial tilt and thus its
 phasing should be fixed relative to the calendar. However, its
 phase and amplitude change dramatically and consistently under various
 configurations of orbital precession in several Earth System models. Here
 we undertake Earth System model simulations and simulations of an
 intermediate coupled model to investigate causes of this behavior. In
 particular, simulations of the Community Earth System Model version 1.2
 are carried out spanning the space of orbital eccentricity and longitude
 of perihelion.  This dataset archives model output and analytical
 codes used in this investigation. The results are reported in Chiang et
 al. (2022), Two annual cycles of the Pacific cold tongue under orbital
 precession.
  Nature, https://doi.org/10.1038/s41586-022-05240-9.
  
description: <strong>There are 4 tar files associated with analytical
 codes:</strong> Code_Boos_Korty.tar:
 Python script to implement the energy flux potential analysis of Boos and
 Korty (2016).  Original code was provided by William Boos (UC Berkeley),
 and adapted by Paul Nicknish. Code is posted with the permission from
 William Boos. Code_Fixed_Angle.tar: Scripts to
 implement the fixed angle calendar correction of Pollard and Reusch
 (2002), specific to CESM output.  Original fortran code provided by David
 Pollard, and further adapted by Michael Erb.  These are the original codes
 and documentation as provided by Michael Erb.  Code and documentation is
 posted with permission from Michael Erb and Dave Pollard.
 Code_Misc.tar: MATLAB scripts to reproduce Figure 3 and Table 1,
 and Extended Data Figure 6.  Code by John Chiang, except for one Matlab
 function - intersections.m - that was developed by Douglas M. Schwarz and
 redistributed with permission. Code_ISM.tar:  The
 Battisti (1988) model as used in the manuscript.  Original code from David
 Battisti, and adapted by Daniel Vimont.  Code is posted with permission
 from David Battisti. <strong>There
 are 5 tar files associated with 5 distinct model
 outputs:</strong> Data_CESM_LOP.tar:
 CESM LOP runs for eccentricity = 0, 0.01, 0.02, and 0.04.
 Data_CESM_idealized.tar: CESM1.2 'no annual cycle',
 'tilt-only', 'distance-only', and
 'tilt-and-distance' runs listed in Extended Data Table
 1. Data_HadCM3.tar: HadCM3 output used in Figure
 1. Data_iCESM.tar: iCESM1.2 output used in Figure
 1. Data_ICM.tar: contains (i) the CESM slab ocean
 model output used to generate the wind forcing for the intermediate
 coupled model; and (ii) the intermediate coupled model output.
 <strong>The GFDL CM2.1 and EC-Earth model
 outputs also used in figure 1 of the paper can be found in these
 archives:</strong> Erb, Michael,
 Broccoli, Anthony & Raney, Bryan. Idealized single-forcing GCM
 simulations with GFDL CM2.1. (2018) doi:10.5281/zenodo.1194480.
 Bosmans, Joyce. Idealized orbital extreme GCM simulations with
 EC-Earth-2-2. (2019) doi:10.5281/zenodo.3268528.
DOI: 10.5061/dryad.sqv9s4n66
title: Drivers of nematode diversity in forest soils across climatic zones

description: Nematodes are the most abundant multi-cellular animals in soil,
 influencing key processes and functions in terrestrial ecosystems. Yet,
 little is known about the drivers of nematode abundance and diversity in
 forest soils across climatic zones. This is despite forests cover
 approximately 30% of the earth’s land surface, provide many crucial
 ecosystem services but strongly vary in hydrothermal conditions and
 associated ecosystem properties across climatic zones. Here, we collected
 nematode samples from 13 forests across a latitudinal gradient. We divided
 this gradient in temperate, warm-temperate, and tropical climatic zones
 and found that across the gradient, nematode abundance and diversity were
 mainly influenced by soil organic carbon. However, mean annual temperature
 and total soil phosphorus in temperate zones, soil pH in warm-temperate
 zones, and mean annual precipitation in tropical zones were more important
 in driving nematode alpha-diversity, biomass and abundance. Additionally,
 nematode beta-diversity was higher in temperate than in warm-temperate and
 tropical zones. Together, our findings demonstrate that the drivers of
 nematode diversity in forested ecosystems are affected by the spatial
 scale and climatic conditions considered. This implies that high
 resolution studies are needed to accurately predict how soil functions
 respond if climate conditions move beyond the coping range of soil
 organisms.
DOI: 10.57707/fmi-b2share.s24rj-s1926
title: Fluxes and plant diversity data in urban grasslands

description: Files that were used in Justine et al.'s manuscript (2023), entitled 'Lawns and meadows in urban green space - A comparison from perspectives of greenhouse gas, drought resilience and plant functional types'. CO2, CH4 and N2O fluxes, C/N content in soil and plant diversity were measured in urban grasslands around Helsinki Metropolitan Area. At four of the study sites including a mesic meadow, a dry meadow, an irrigated lawn and a non-irrigated lawn, total ecosystem respiration, GPP, green cover and plant diversity were intensively recorded (about every two weeks from May-November) from 2021-2022. Twelve other sites (6 control lawns and 6 meadows) belonging to the Lawns into Meadows experiment were studied from 2020-2022, they also provide crucial data (respiration, CH4 and N2O and plant functional type proportions) about conversion from a lawn into a meadow. 
Compared to the previous dataset, some changes were made:
 - 00_READ_ME: descriptions were improved and figures/tables updated 
 - 01_COCARBON_Flux_data: gas slope and NMRSE were added
 - 02_LIM_Flux_data: gas slope and NMRSE were added
 - ex-07_LIM_Plants&flux: discarded because of redundancy (in addition, one tree proportion value was missing)
 - 08_Soil_CN_data: added to the folder
 - 09_various_soil_characteristics: added to the folder
DOI: 10.13144/lil-0356
title: Budget des familles (BDF) - 1972

description: Dernière enquête de la série commencée en 1965 où la consommation alimentaire était séparée des autres postes de dépenses.Elle a pour objectif central l'étude des dépenses (montant et nature) et des ressources des ménages. Toutes les dépenses non alimentaires (habillement, transports, vacances, épargne, logement) sont enregistrées. Cependant, en comparant les résultats avec ceux des séries de la Comptabilité Nationale, il apparait une légère dégradation de la qualité de ces enquêtes car de plus en plus de consommations échappent aux relevés (achats plus fréquents dans les grandes surfaces qui sont lourds à répartir dans les carnets de compte, achats plus individualisés sur chaque membre du ménage).
DOI: 10.57707/fmi-b2share.m030n-w4g46
title: Fluxes and plant diversity data in urban grasslands

description: Files that were used in Justine et al.'s manuscript (2023), entitled 'Lawns and meadows in urban green space - A comparison from perspectives of greenhouse gas, drought resilience and plant functional types'. CO2, CH4 and N2O fluxes, C/N content in soil and plant diversity were measured in urban grasslands around Helsinki Metropolitan Area. At four of the study sites including a mesic meadow, a dry meadow, an irrigated lawn and a non-irrigated lawn, total ecosystem respiration, GPP, green cover and plant diversity were intensively recorded (about every two weeks from May-November) from 2021-2022. Twelve other sites (6 control lawns and 6 meadows) belonging to the Lawns into Meadows experiment were studied from 2020-2022, they also provide crucial data (respiration, CH4 and N2O and plant functional type proportions) about conversion from a lawn into a meadow. 
Compared to the previous dataset, some changes were made:
 - 00_READ_ME: descriptions were improved and figures/tables updated 
 - 01_COCARBON_Flux_data: gas slope and NMRSE were added
 - 02_LIM_Flux_data: gas slope and NMRSE were added
 - ex-07_LIM_Plants&flux: discarded because of redundancy (in addition, one tree proportion value was missing)
 - 08_Soil_CN_data: added to the folder
 - 09_various_soil_characteristics: added to the folder
DOI: 10.5061/dryad.9ghx3ffkn
title: Data from: Increased precipitation attenuates shrub encroachment by facilitating herbaceous growth in a Mongolian grassland

description: Widespread shrub encroachment is profoundly impacting the structures and
 functions of global drylands, and precipitation change is assumed to be
 one of the most critical factors affecting this phenomenon. However, there
 is little evidence to show how precipitation changes will affect the
 process. In this study, we conducted a 6-year precipitation manipulation
 experiment (-30%, ambient, +30%, and +50%) to investigate the effects of
 precipitation changes on the growth of shrubs and herbaceous plants in a
 shrub-encroached grassland in Inner Mongolia. We found that the increasing
 precipitation significantly increased the mean height, coverage, and
 aboveground biomass of herbaceous species, while the growth of shrub
 species did not exhibit a significant response to precipitation changes.
 With increasing precipitation, the relative coverage of shrubs decreased,
 while that of herbs increased. The native dominant herbaceous plant
 (Leymus chinensis) with more sensitive maximum photosynthetic rate to the
 precipitation change, showed higher photosynthetic nitrogen use efficiency
 and water use efficiency than those of the encroached shrub species
 (Caragana microphylla) at high soil moisture contents, reflecting that the
 ecophysiological characteristics of L. chinensis might provide it a
 competitive advantage under increased precipitation. Our findings suggest
 that increasing precipitation may slow down shrub encroachment by
 facilitating herbaceous growth in Mongolian grasslands, and consequently
 affect the forage value and carbon budget in these ecosystems.
DOI: 10.5061/dryad.sqv9s4n67
title: Functional diversity of farmland bees across rural-urban landscapes in a tropical megacity

description: Urbanization is a major threat to biodiversity and food security, as
 expanding cities, especially in the Global South, increasingly compete
 with natural and agricultural lands. However, the impact of urban
 expansion on agricultural biodiversity in tropical regions is overlooked.
 Here we assessed how urbanization affects the functional response of
 farmland bees, the most important pollinators for crop production. We
 sampled bees across three seasons in 36 conventional vegetable-producing
 farms spread along an urbanization gradient in Bengaluru, an Indian
 megacity. We investigated how landscape and local environmental drivers
 affected different functional traits (sociality, nesting behaviour, body
 size and specialization) and functional diversity (functional dispersion)
 of bee communities. We found that the functional responses to urbanization
 were trait specific with more positive than negative effects of grey area
 (sealed surfaces and buildings) on species richness, functional diversity
 and abundance of most functional groups. As expected, larger, solitary,
 cavity-nesting, and surprisingly, specialist bees benefitted from
 urbanization. In contrast to temperate cities, the abundance of
 ground-nesters increased in urban areas, presumably because larger patches
 of bare soil were still available besides roads and buildings. However,
 overall bee abundance and the abundance of social bees (85% of all bees)
 decreased with urbanization, threatening crop pollination. Crop diversity
 promoted taxonomic and functional diversity of bee communities. Locally,
 flower resources promoted the abundance of all functional groups, and
 natural vegetation could maintain diverse pollinator communities
 throughout the year, especially during the non-cropping season. However,
 exotic plants decreased functional diversity and bee specialization. To
 safeguard bees and their pollination services in urban farms, we recommend
 (1) to preserve semi-natural vegetation (hedges) around cropping fields to
 provide nesting opportunities for above-ground nesters, (2) to promote
 farm-level crop diversification of beneficial crops (e.g., pulses,
 vegetables and spices), (3) to maintain native natural vegetation along
 field-margins, (4) to control and remove invasive exotic plants that
 disrupt native plant-pollinator interactions. Overall, our results suggest
 that urban agriculture can maintain functionally diverse bee communities
 and, if managed in a sustainable manner, can be used to develop win-win
 solutions for biodiversity conservation of pollinators and food security
 in and around cities.
description: 36 conventional vegetable-producing smallholder farms as study
 sites, spread along a continuous urbanization gradient.
 100m X 2m transect-walk in each farm. Bees were sampled with
 sweep nets. 12 sampling rounds (once per
 month).
DOI: 10.5061/dryad.280gb5mrz
title: Data from: Widespread habitat for Europe's largest herbivores, but poor connectivity limits recolonization

description: Here, we make available the following data related to the manuscript
 "Widespread habitat for Europe's largest herbivores, but poor
 connectivity limits recolonization". 1. The input data used to
 generate the Species distribution models for European bison and moose, as
 .csv-files. 2. The species location records used in the analyses, at a
 coarsened resolution (50 km). 3. All output maps of habitat suitability,
 potential habitats, and connectivity, as .tif-files.
DOI: 10.5517/ccvrm39
title: CCDC 797261: Experimental Crystal Structure Determination

description: Related Article: C.Serre, F.Millange, C.Thouvenot, M.Nogues, G.Marsolier, D.Louer, G.Ferey|2002|J.Am.Chem.Soc.|124|13519|doi:10.1021/ja0276974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.13144/lil-0357
title: Budget des familles (BDF) - 1973

description: L'enquête « Budget de famille » réalisée par l'Insee en 1973 a pour objectif central l'étude des dépenses (montant et nature) et des ressources des ménages.Toutes les dépenses (alimentation, habillement, transports, vacances, épargne, logement) sont enregistrées. Cependant en raison de contraintes budgétaires, l'enquête "Budget de famille" est regroupée à l'enquête "Alimentaire", mais l'essai n'est pas concluant et seuls les résultats de la partie alimentaire sont fiables.
DOI: 10.15468/dl.u5v2e9
title: Occurrence Download

description: A dataset containing 562 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Heleopera",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 562 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003134-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.866t1g1t1
title: Data from: Testosterone eliminates strategic prosocial behavior in healthy males

description: Humans are strategically more prosocial when their actions are being
 watched by others than when they act alone. Using a psychopharmacogenetic
 approach, we investigated the computational and endocrinological
 mechanisms of such audience-driven prosociality. 187 male participants
 received either a single dose of testosterone or a placebo and performed a
 prosocial and self-benefitting reinforcement learning task. Crucially, the
 task was performed either in private or when being watched. Rival
 theories suggest that the hormone might either diminish or strengthen
 audience-depended generosity. We show that exogenous testosterone fully
 eliminated strategic, i.e., feigned, generosity and thus decreased
 submission to audience expectations. We performed reinforcement-learning
 drift-diffusion computational modeling to elucidate which latent aspects
 of decision-making testosterone acted on. The modeling revealed that
 testosterone compared to placebo did not deteriorate reinforcement
 learning per se, rather, when being watched, the hormone altered
 the degree to which the learned information on choice value translated to
 action selection. This indicates that when being watched, the hormone was
 influencing participants towards choices that are less optimal for
 prosociality, which resulted in nonconforming behavior. Indeed,
 exploratory personal values analysis suggests that the effect of
 testosterone in our reinforcement learning task is underpinned by a shift
 from socially conforming to nonconforming decisions. Together, these
 results indicate that instead of deceptively increasing socially desirable
 behavior, testosterone - by acting on situational personal values -
 counteracts submission to audience expectations, despite plausible
 reputational costs.
description: Data from a prosocial reinforcement learning task, programmed in
 PsychoPy.
DOI: 10.5061/dryad.f4qrfj6zd
title: Subtyping of common complex diseases and disorders by integrating heterogeneous data. Identifying clusters among women with lower urinary tract symptoms in the LURN study

description: We present a methodology for subtyping of persons with a common clinical
 symptom complex by integrating heterogeneous continuous and categorical
 data. We illustrate it by clustering women with lower urinary tract
 symptoms (LUTS), who represent a heterogeneous cohort with overlapping
 symptoms and multifactorial etiology. Data collected in the Symptoms of
 Lower Urinary Tract Dysfunction Research Network (LURN), a multi-center
 observational study, included self-reported urinary and non-urinary
 symptoms, bladder diaries, and physical examination data for 545 women.
 Heterogeneity in these multidimensional data required thorough and
 non-trivial preprocessing, including scaling by controls and weighting to
 mitigate data redundancy, while the various data types (continuous and
 categorical) required novel methodology using a weighted Tanimoto indices
 approach. Data domains only available on a subset of the cohort were
 integrated using a semi-supervised clustering approach. Novel contrast
 criterion for determination of the optimal number of clusters in consensus
 clustering was introduced and compared with existing criteria.
 Distinctiveness of the clusters was confirmed by using multiple criteria
 for cluster quality, and by testing for significantly different variables
 in pairwise comparisons of the clusters. Cluster dynamics were explored by
 analyzing longitudinal data at 3- and 12-month follow-up. Five clusters of
 women with LUTS were identified using the developed methodology. None of
 the clusters could be characterized by a single symptom, but rather by a
 distinct combination of symptoms with various levels of severity. Targeted
 proteomics of serum samples demonstrated that differentially abundant
 proteins and affected pathways are different across the clusters. The
 clinical relevance of the identified clusters is discussed and compared
 with the current conventional approaches to the evaluation of LUTS
 patients. The rationale and thought process are described for the
 selection of procedures for data preprocessing, clustering, and cluster
 evaluation. Suggestions are provided for minimum reporting requirements in
 publications utilizing clustering methodology with multiple heterogeneous
 data domains.
DOI: 10.5061/dryad.f7m0cfxzw
title: Data from: Gradual warming prior to the end-Permian mass extinction

description: The biggest known mass extinction in the history of animal life occurred
 at the Permian-Triassic boundary and has often been linked to global
 warming. Previous studies suggested that a geologically rapid (less than
 40 kyr) temperature increase of more than 10°C occurred simultaneously
 with the main extinction pulse. This hypothesis is challenged by
 geochemical and palaeontological data indicating profound environmental
 perturbations and a temperature rise prior to the main extinction. Using
 Secondary Ion Mass Spectrometry (SIMS), we measured oxygen isotope ratios
 from Changhsingian (Late Permian) ostracods of northwestern Iran. Our data
 show that ambient seawater temperature began to rise at least 300 kyr
 prior to the main extinction event. Gradual warming by approximately 12°C
 was probably responsible for initial environmental degradation that
 eventually culminated in the global end-Permian mass extinction.
DOI: 10.57707/fmi-b2share.ahk3m-b6728
title: Fluxes and plant diversity data in urban grasslands

description: Files that were used in Justine et al.'s manuscript, entitled 'Lawns and meadows in urban green space - A comparison from greenhouse gas, drought resilience and biodiversity perspectives'. CO2, CH4 and N2O fluxes, C/N content in soil and plant diversity were measured in urban grasslands around Helsinki Metropolitan Area. Twelve of the sites (6 control lawns and 6 meadows) belong to the Lawns into Meadows experiment measured from 2020-2022, and provide crucial data (respiration, CH4 and N2O and plant diversity) about conversion from a lawn into a meadow. The 4 other sites includes a mesic meadow, a dry meadow, an irrigated lawn and a non-irrigated lawn, where respiration, GPP, green cover and plant diversity were recorded from 2021-2022.
DOI: 10.5061/dryad.tb2rbp032
title: Data from: Climate change is associated with increased allocation to potential outcrossing in a common mixed mating species

description: Premise: The balance between cross- and self-fertilization is driven by
 the environment. Yet no long-term study has documented whether
 anthropogenic climate change is affecting reproductive strategy allocation
 in species with mixed mating systems. Here, we test whether the common
 blue violet (Viola sororia; Violaceae) has altered relative allocation to
 the production of potentially outcrossing flowers as the climate has
 changed across the 20th century. Methods: Using herbarium records spanning
 1875 to 2015 from the central United States, we quantified production of
 obligately selfing cleistogamous (CL) flowers and potentially outcrossing
 chasmogamous (CH) flowers by V. sororia, coupled these records with
 historic temperature and precipitation data, and tested whether changes to
 the proportion of CL flowers correlate with temporal climate trends.
 Results: We find that V. sororia progressively produced lower proportions
 of CL flowers across the past century and in environments with lower mean
 annual temperature and higher total annual precipitation. We also find
 that both CL and CH flower phenology has advanced across this time period.
 Conclusions: Our results suggest that V. sororia has responded to lower
 temperatures and greater water availability by shifting reproductive
 strategy allocation away from selfing and toward potential outcrossing.
 This provides the first long term study of how climate change may affect
 relative allocation to potential outcrossing in species with mixed mating
 systems. By revealing that CL flowering is associated with low water
 availability and high temperature, our results suggest the production of
 obligately selfing flowers is favored in water limited environments.