cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7196648
title: Dataset for modelling the apparent von Kármán parameter in thermally and sedimentologically stratified air flows

description: The dataset is used to support the article titled as "Modelling the apparent von Kármán parameter in thermally and sedimentologically stratified air flows" by the same authors. There are two spreadsheets in the datasheet.xlsx file. The first one is the 5-min block averaged data derived from the measurements by a meterologoical tower. The second one is the sand transport and saltation sensor data derived from a number of 5-10 min measurements by sand trap stacks and a Sensit. <strong>1. Description for Spreadsheet "Tower Data":</strong> Date: Data collection date Run_number: the run number counting from the start of the experiment. Measurements were taken for 5 min for each run. UA1: resultant wind speed (m/s) measured by a 2D ultrasonic anemometer at 0.19 m above the bed UA2: resultant wind speed (m/s) measured by a 2D ultrasonic anemometer at 0.49 m above the bed UA3: resultant wind speed (m/s) measured by a 2D ultrasonic anemometer at 0.76 m above the bed UA: resultant wind speed (m/s) measured by a 3D ultrasonic anemometer at 1.49 m above the bed R_square: the R<sup>2</sup> value for log-linear curve fitting between wind speed measured by ultrasonic anemometers and elevation R_f: flux Richardson number R<sub>f</sub> u_star: shear velocity u<sub>*</sub> (m/s) zeta: stability parameter ζ phi_m: dimensionless wind shear Φ<sub>m</sub> kappa_a: apparent von Kármán parameter κ<sub>a</sub> KE: KE values measured by Sensit Q: Calculated sediment transport rate Q ( g m<sup>-1</sup> s<sup>-1</sup>) using KE-Q relationship described in spreadsheet "Trap data" <strong>2. Description for Spreadsheet "Trap Data":</strong> KE: KE values measured by Sensit Q: sediment transport rate Q ( g m<sup>-1</sup> s<sup>-1</sup>) measured by sand traps The figure with regression equation describes the relationship between KE and Q.
DOI: 10.5281/zenodo.7196632
title: Supplementary Data for "The phosphorus budget of the silicate Earth based on an updated estimate of P/Nd ratio".

description: Supplementary data tables for Ma et al. (2022) associated with the paper entitled "The phosphorus budget of the silicate Earth based on an updated estimate of P/Nd ratio".
DOI: 10.5281/zenodo.7196631
title: Supplementary Data for "The phosphorus budget of the silicate Earth based on an updated estimate of P/Nd ratio".

description: Supplementary data tables for Ma et al. (2022) associated with the paper entitled "The phosphorus budget of the silicate Earth based on an updated estimate of P/Nd ratio".
DOI: 10.6084/m9.figshare.21331059.v1
title: Comparative Analysis of the Complete Chloroplast Genomes of Six Berberis Species and Development of Specific DNA Barcode and its Application in Chinese Medicinal Material Berberidis Radix

description: Chloroplast genomes have been widely considered as a valuable resource for phylogenetic reconstruction and molecular marker development in plant species. In this study, for the first time, we systematically compared the complete chloroplast genome sequences of the six <em>Berberis</em> species (<em>B. julianae</em>, <em>B. tsienii</em>, <em>B. pruinose</em>, <em>B. thunbergii</em>, <em>B. poiretii</em> and <em>B. wilsoniae</em>), which commonly were used as medicinal herb Berberidis Radix. The <em>ndhD-ccsA</em> as highly divergent region was found and taken as a potential marker for species identification. Combined with DNA metabarcoding technology, the barcode was applied to the Chinese patent medicine containing Berberidis Radix (Sankezhen). The results showed that the six complete chloroplast genomes exhibited a typical quadripartite structure which ranging from 165,934 to 168,828 bp in length. A total of 147 unique genes were identified in each chloroplast genome, comprising 101 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. Comparative genome analysis demonstrated that the six chloroplast genomes were highly conserved in genome size, GC contents, and gene organization. The phylogenetic relationships of six <em>Berberis</em> plants were revealed and the results showed that <em>Mahonia</em> was supported as separate clade in the <em>Berberis</em> genera tree, which was coincident with previous studies. The nucleotide diversity analysis revealed seven variable loci in protein coding regions, and four variable loci in gene spacer regions, respectively. The primer pair 1508F-1864R on <em>ndhD-ccsA </em>region was proven to precisely discriminate the six studied <em>Berberis</em> species and recovered the biodiversity of <em>Berberis</em> species in Chinese patent medicines. In general, this study provides meaningful genetic information for <em>Berberis</em> plants, and establishes a method to realize the identification of Berberidis Radix as multi-origin Chinese medicinal materials, which can be applied to Chinese patent medicines containing Berberidis Radix.
DOI: 10.25921/ch8r-sy29
title: ME70 Water Column Sonar Data Collected During RL1603
DOI: 10.5519/qd.8iso9iu7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (77193 records)
DOI: 10.5519/qd.y0cc2e4f
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (67917 records)
DOI: 10.5519/qd.sjlr0qbw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (21054 records)
DOI: 10.5281/zenodo.6760047
title: Pipaset preview: A multimodal dataset for AMT and EA tasks dedicated to Chinese music instrument Pipa

description: Yuancheng Wang, Yuyang Jing , Wei Wei, Dorian Cazau, Olivier Adam, Qiao Wang Accompanying Website here. If you make use of PipaSet for academic purposes, please cite the following publication: PipaSet and TEAS: A Multimodal Dataset and Annotation Platform for Automatic Music Transcription and Expressive Analysis dedicated to Chinese Traditional Plucked String Instrument Pipa. IEEE ACCESS 2022. This project was led by Yuancheng Wang at Information School of Information Science and Engineering, Southeast University, China, along with my supervisor Prof. Qiao Wang from same school and Dr. Yuyang Jing from Nanjing University of the Arts, Wei Wei form Xiaozhuang University, Dr. Dorian Cazau from Institute of Mines-Télécom Atlantique in Brest France, Prof. Olivier Adam from Sorbonne University. We present PipaSet, a dataset that provides multimodal pipa recordings alongside a high diversity of annotations for Automatic Music Transcription and Expressive Analysis tasks, including note, pitch contours, string and fret positions, and playing techniques. More information will be coming soon to cover more pieces of music played by pipa.
DOI: 10.5281/zenodo.6760046
title: Pipaset preview: A multimodal dataset for AMT and EA tasks dedicated to Chinese music instrument Pipa

description: Yuancheng Wang, Yuyang Jing , Wei Wei, Dorian Cazau, Olivier Adam, Qiao Wang Accompanying Website here. If you make use of PipaSet for academic purposes, please cite the following publication: PipaSet and TEAS: A Multimodal Dataset and Annotation Platform for Automatic Music Transcription and Expressive Analysis dedicated to Chinese Traditional Plucked String Instrument Pipa. IEEE ACCESS 2022. This project was led by Yuancheng Wang at Information School of Information Science and Engineering, Southeast University, China, along with my supervisor Prof. Qiao Wang from same school and Dr. Yuyang Jing from Nanjing University of the Arts, Wei Wei form Xiaozhuang University, Dr. Dorian Cazau from Institute of Mines-Télécom Atlantique in Brest France, Prof. Olivier Adam from Sorbonne University. We present PipaSet, a dataset that provides multimodal pipa recordings alongside a high diversity of annotations for Automatic Music Transcription and Expressive Analysis tasks, including note, pitch contours, string and fret positions, and playing techniques. More information will be coming soon to cover more pieces of music played by pipa.
DOI: 10.5519/qd.ae2ri48g
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1804 records)
DOI: 10.6084/m9.figshare.21331212
title: Sugiura-2022

description: Dataset for "Notch1 signaling is limited in healthy mature kidneys in vivo" by Sugiura et al (2022). "TriplePosi" means N1-Gal4VP16; UAS-Cre-R26GRR. ID numbers were used for the mouse individuals.
DOI: 10.6084/m9.figshare.21331212.v1
title: Sugiura-2022

description: Dataset for "Notch1 signaling is limited in healthy mature kidneys in vivo" by Sugiura et al (2022). "TriplePosi" means N1-Gal4VP16; UAS-Cre-R26GRR. ID numbers were used for the mouse individuals.
DOI: 10.5281/zenodo.7047191
title: Climate change may outpace current wheat breeding yield improvements in North America

description: The raw data in Climate change may outpace current wheat breeding yield improvements in North America
DOI: 10.5281/zenodo.7047190
title: Climate change may outpace current wheat breeding yield improvements in North America

description: The raw data in Climate change may outpace current wheat breeding yield improvements in North America
DOI: 10.5519/qd.wexidfi4
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (6665 records)
DOI: 10.5519/qd.5p4pqiwt
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (9091 records)
DOI: 10.6084/m9.figshare.21331587.v1
title: data set ofds 2022

description: data respondents of online food delivery service apps
DOI: 10.6084/m9.figshare.21331587
title: data set ofds 2022

description: data respondents of online food delivery service apps
DOI: 10.25946/21282858
title: Does Active Release Techniques ® (ART) cause a measurable change in the stiffness of the medial gastrocnemius?

description: This is a prospective cohort study designed to determine if shear wave elastography can reveal a measurable change in the muscle stiffness of the medial gastrocnemius after an ART® intervention. And to further investigate how long any potential changes in stiffness last within the medial gastrocnemius muscle post intervention.
DOI: 10.25946/21282858.v1
title: Does Active Release Techniques ® (ART) cause a measurable change in the stiffness of the medial gastrocnemius?

description: This is a prospective cohort study designed to determine if shear wave elastography can reveal a measurable change in the muscle stiffness of the medial gastrocnemius after an ART® intervention. And to further investigate how long any potential changes in stiffness last within the medial gastrocnemius muscle post intervention.
DOI: 10.5281/zenodo.7196868
title: SSiB5/TRIFFID/DayCent-SOM datasets for the paper's in-situ validations and global evaluations

description: The various data used for the paper "A plant carbon-nitrogen interface coupling framework in a coupled biophysical-ecosystem-biogeochemical model: Its parameterization, implementation, and evaluation" submitted to Geoscientific Model Development for publication are shared here.
DOI: 10.6084/m9.figshare.21331599
title: Rawdata for Peng et al.2022

description: Rawdata for Peng et al. of initial litter quality
DOI: 10.6084/m9.figshare.21331599.v1
title: Rawdata for Peng et al.2022

description: Rawdata for Peng et al. of initial litter quality
DOI: 10.6084/m9.figshare.20726392.v5
title: Incidence, risk and impact of unplanned ICU readmission on patient outcomes and resource utilisation in tertiary level ICUs in Nepal.

description: The study assesses the determinants of risk attributable to unplanned ICU readmission in four ICUs in Kathmandu, Nepal. Despite growing literature on this topic, most of the evidence on incidence, characteristics, associated risk factors and attributable outcomes of unplanned readmission to ICU are from studies performed in high-income countries. In this study, the registry-embedded eCRF reported data on case mix, severity of illness, in-ICU interventions (including organ support), ICU outcome, and readmission characteristics. Data were captured in all adult patients admitted between September 2019 and February 2021. Population and ICU encounter characteristics were compared between those with and without readmission. Independent risk factors for readmission were assessed using univariate analysis. Unplanned ICU readmission rates were adversely associated with significantly poorer outcomes, increased ICU resource utilisation. Clinical and organisational characteristics influenced risk of readmission and outcome.
DOI: 10.5281/zenodo.7192724
title: Interaction of the inhibitory peptides ShK and HmK with the voltage-gated potassium channel KV1.3: Role of conformational dynamics

description: <strong>ABSTRACT: </strong>Peptide toxins that adopt the ShK fold can inhibit the voltage-gated potassium channel K<sub>V</sub>1.3 with IC<sub>50</sub> values in the pM range, and are therefore potential leads for drugs targeting autoimmune and neuroinflammatory diseases. NMR relaxation measurements and pressure-dependent NMR have shown that, despite being cross-linked by disulfide bonds, ShK itself is flexible in solution. This flexibility affects the local structure around the pharmacophore for K<sub>V</sub>1.3 channel blockade and, in particular, the relative orientation of the key Lys and Tyr side chains (Lys22 and Tyr23 in ShK), and has implications for the design of K<sub>V</sub>1.3 inhibitors. In this study, we have performed molecular dynamics (MD) simulations on ShK and a close homolog, HmK, in order to probe the conformational space occupied by the Lys and Tyr residues, and docked the different conformations with a recently determined cryo-EM structure of the K<sub>V</sub>1.3 channel. Although ShK and HmK have 60% sequence identity, their dynamic behaviors are quite different, with ShK sampling a broad range of conformations over the course of a 5 μs MD simulation, while HmK is relatively rigid. We also investigated the importance of conformational dynamics, in particular the distance between the side chains of the key dyad Lys22 and Tyr23, for binding to K<sub>V</sub>1.3. Although these peptides have quite different dynamics, the dyad in both adopts a similar configuration upon binding, revealing a conformational selection upon binding to K<sub>V</sub>1.3 in the case of ShK. Intriguingly, the more flexible peptide, ShK, binds with nearly 300-fold higher affinity than HmK.
DOI: 10.5281/zenodo.7192723
title: Interaction of the inhibitory peptides ShK and HmK with the voltage-gated potassium channel KV1.3: Role of conformational dynamics

description: <strong>ABSTRACT: </strong>Peptide toxins that adopt the ShK fold can inhibit the voltage-gated potassium channel K<sub>V</sub>1.3 with IC<sub>50</sub> values in the pM range, and are therefore potential leads for drugs targeting autoimmune and neuroinflammatory diseases. NMR relaxation measurements and pressure-dependent NMR have shown that, despite being cross-linked by disulfide bonds, ShK itself is flexible in solution. This flexibility affects the local structure around the pharmacophore for K<sub>V</sub>1.3 channel blockade and, in particular, the relative orientation of the key Lys and Tyr side chains (Lys22 and Tyr23 in ShK), and has implications for the design of K<sub>V</sub>1.3 inhibitors. In this study, we have performed molecular dynamics (MD) simulations on ShK and a close homolog, HmK, in order to probe the conformational space occupied by the Lys and Tyr residues, and docked the different conformations with a recently determined cryo-EM structure of the K<sub>V</sub>1.3 channel. Although ShK and HmK have 60% sequence identity, their dynamic behaviors are quite different, with ShK sampling a broad range of conformations over the course of a 5 μs MD simulation, while HmK is relatively rigid. We also investigated the importance of conformational dynamics, in particular the distance between the side chains of the key dyad Lys22 and Tyr23, for binding to K<sub>V</sub>1.3. Although these peptides have quite different dynamics, the dyad in both adopts a similar configuration upon binding, revealing a conformational selection upon binding to K<sub>V</sub>1.3 in the case of ShK. Intriguingly, the more flexible peptide, ShK, binds with nearly 300-fold higher affinity than HmK.
DOI: 10.5281/zenodo.7196577
title: SNPs for 75 rice genome aseemblies and additional 186 genomes wild rice

description: SNPs for 75 rice genome aseemblies and additional 186 genomes wild rice
DOI: 10.5281/zenodo.3696431
title: Eastward dipping style of the underthrusting Indian lithosphere beneath the Tethyan Himalaya illuminated by P and S receiver functions

description: This dataset presented here is used in the manuscript entitled "Eastward dipping style of the underthrusting Indian lithosphere beneath the Tethyan Himalaya illuminated by P and S receiver functions".
DOI: 10.5281/zenodo.3696430
title: Eastward dipping style of the underthrusting Indian lithosphere beneath the Tethyan Himalaya illuminated by P and S receiver functions

description: This dataset presented here is used in the manuscript entitled "Eastward dipping style of the underthrusting Indian lithosphere beneath the Tethyan Himalaya illuminated by P and S receiver functions".
DOI: 10.6084/m9.figshare.21220241.v1
title: Jurassic evolution of Dunhuang Basin and its implication on early history of Altyn Tagh Fault, Northeast Tibet Plateau

description: Detrital zircon and trace elemennt data of the Jurassic strata in the Dunhuang Basin
DOI: 10.5281/zenodo.6781509
title: Data from 666 earthquake/tsunami scenario simulations targeting Nankai subduction

description: <strong>Summary: </strong> Data from 666 earthquake/tsunami scenario simulations targeting Nankai subduction Tsunami simulation solver: TUNAMI-N2 Fault rupture model: Okada model(Okada, 1985) Each scenario data consists of 71 ASCII files containing the simulated wave sequences at the synthetic gauges Each single scenario is tagged as "Nankai-XYZE", where XYZW would be the number from <strong>0003</strong> to <strong>1470</strong>. Some of the synthetic gauges are located based on the real ocean gauge points (e.g., DONET2, NOPHAS) nearby Shikoku region, Japan. <strong>Details of each file:</strong> <strong>wave_sequenses.tar.gz</strong>: A series of wave sequences (4-hour wave history-data, recorded every 5 seconds) at 71 synthetic gauges are provided in ascii type format. <br> Note that <strong>5.8GB additional storage would be required</strong> to fully unzip this archive file with the following command. <pre><code>tar xzvf wave_sequences.tar.gz</code></pre> You can get all scenario data as follows: <pre><code>wave_sequences ├ Nankai-0003 ├ Nankai-0004 ├… ├ Nankai-1467 └ Nankai-1470 </code></pre> Each directory contains the 71 files, head with 'pntX_Y.asc', <pre><code>Nankai-0003 ├ pnt1_01.asc ├ pnt1_02.asc ├... ├ pnt5_46.asc └ pnt5_47.asc</code></pre> which contains the wave sequence data. The ASCII file, the time (minute) elapsed from the fault rupture is aligned in the left column, and the wave displacements \eta (meter) from the original surface location are in the right column. <strong>quake_params.csv</strong>: The parameter used to generate 666 earthquake scenarios caused by the rupture of rectangular fault, by means of Okada model. (Okada 1985) <strong>synthetic_gauges.csv</strong>: The locations of 71 synthetic gauges.
description: {"references": ["Okada, Yoshimitsu. \"Surface deformation due to shear and tensile faults in a half-space.\" Bulletin of the seismological society of America 75.4 (1985): 1135-1154."]}
DOI: 10.48425/0085458
title: Protocol plant measurements in heath and meadow sites Varanger

description: Protocol for plant measurements (point intercept frequency, species composition and shrub height) in heath and meadow sites on the Varanger peninsula. The following datasets are based on this protocol: * V_meadow_vascular_plant_abundance_observational * V_heath_vascular_plant_abundance_observational * V_meadow_plant_species_composition_observational * V_heath_plant_species_composition_observational * V_meadow_ground_cover_observational * V_heath_ground_cover_observational * V_tall_shrub_shrub_height_observational * V_heath_shrub_height_observational * V_meadow_vascular_plant_abundance_experimental * V_heath_vascular_plant_abundance_experimental * V_meadow_plant_species_composition_experimental * V_heath_plant_species_composition_experimental * V_meadow_ground_cover_experimental * V_heath_ground_cover_experimental * V_tall_shrub_shrub_height_experimental * V_heath_shrub_height_experimental
DOI: 10.6084/m9.figshare.21332677
title: Additional file 2 of DNA methylation signatures on vascular differentiation genes are aberrant in vessels of human cerebral arteriovenous malformation nidus

description: Additional file 2. Supplementary Table 2: Differentially methylated promoter level.
DOI: 10.6084/m9.figshare.21332677.v1
title: Additional file 2 of DNA methylation signatures on vascular differentiation genes are aberrant in vessels of human cerebral arteriovenous malformation nidus

description: Additional file 2. Supplementary Table 2: Differentially methylated promoter level.
DOI: 10.6084/m9.figshare.21332734
title: Additional file 2 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 2. An Excel table containing the list of 535 independent SNPs associated with WHR.
DOI: 10.6084/m9.figshare.21332734.v1
title: Additional file 2 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 2. An Excel table containing the list of 535 independent SNPs associated with WHR.
DOI: 10.6084/m9.figshare.21332737
title: Additional file 3 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 3. An Excel table containing the simulation results for Settings 1–6 and 8
DOI: 10.6084/m9.figshare.21332737.v1
title: Additional file 3 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 3. An Excel table containing the simulation results for Settings 1–6 and 8
DOI: 10.6084/m9.figshare.21332740
title: Additional file 4 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 4. An Excel table containing the simulation results for Setting 7.
DOI: 10.6084/m9.figshare.21332740.v1
title: Additional file 4 of Estimating the effect size of a hidden causal factor between SNPs and a continuous trait: a mediation model approach

description: Additional file 4. An Excel table containing the simulation results for Setting 7.
DOI: 10.6084/m9.figshare.21332747
title: Additional file 1 of Molecular insights into the heat shock proteins of the human parasitic blood fluke Schistosoma mansoni

description: Additional file 1: Dataset S1. Mining Schistosoma mansoni, Schistosoma japonicum and Schistosoma haematobium HSPs. Two tabs are included, the first details the mining of S. mansoni HSPs against human HSP protein sequences using BLASPp and the second details the comparative analysis between the three Schistosoma spp.
DOI: 10.6084/m9.figshare.21332747.v1
title: Additional file 1 of Molecular insights into the heat shock proteins of the human parasitic blood fluke Schistosoma mansoni

description: Additional file 1: Dataset S1. Mining Schistosoma mansoni, Schistosoma japonicum and Schistosoma haematobium HSPs. Two tabs are included, the first details the mining of S. mansoni HSPs against human HSP protein sequences using BLASPp and the second details the comparative analysis between the three Schistosoma spp.
DOI: 10.6084/m9.figshare.21332750
title: Additional file 2 of Molecular insights into the heat shock proteins of the human parasitic blood fluke Schistosoma mansoni

description: Additional file 2: Dataset S2. Expression of HSP genes in different developmental stages of Schistosoma mansoni. Data are presented as raw normalised gene expression and as percentages of the highest gene expression value.