cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10531838
title: Source Data for: Auxin coreceptor IAA17/AXR3 controls cell elongation in Arabidopsis thaliana root solely by modulation of nuclear auxin pathway

description: Raw data associated with the publication "Auxin coreceptor IAA17/AXR3 controls cell elongation in Arabidopsis thaliana root solely by modulation of nuclear auxin pathway"

Each main figure is abbreviated as F, supplemental figures as S. To view the complete data for Figure 1, please download all parts (11) and decompress them in winRAR program.
DOI: 10.5281/zenodo.10568891
title: Publication Data Analysis: Authorship and CRediT Criteria in PLOS ONE

description: This data table compiles publication identifiers such as DOI, MAGID, and PMID, along with crucial information. It unveils the diversity of authors' countries of origin, including a harmonized list for easy comprehension. The data also includes the publication date, year of publication, and a categorization of authorship types. This categorization includes "Authorship meets the criteria defined by PLOS ONE" for those adhering to PLOS ONE's criteria, "Authorship by resources" for those attributing authorship through resources, "Not meet authorship criteria" for those not meeting authorship criteria, and finally, "APC ring" for those involved in funding schemes through Article Processing Charges. These data provide an in-depth view of authorship dynamics within the context of scientific publications.
DOI: 10.5281/zenodo.10568892
title: Publication Data Analysis: Authorship and CRediT Criteria in PLOS ONE

description: This data table compiles publication identifiers such as DOI, MAGID, and PMID, along with crucial information. It unveils the diversity of authors' countries of origin, including a harmonized list for easy comprehension. The data also includes the publication date, year of publication, and a categorization of authorship types. This categorization includes "Authorship meets the criteria defined by PLOS ONE" for those adhering to PLOS ONE's criteria, "Authorship by resources" for those attributing authorship through resources, "Not meet authorship criteria" for those not meeting authorship criteria, and finally, "APC ring" for those involved in funding schemes through Article Processing Charges. These data provide an in-depth view of authorship dynamics within the context of scientific publications.
DOI: 10.6084/m9.figshare.25050554
title: A machine-learning based alternative to phylogenetic bootstrap

description: A data-driven approach to estimate branch support values with a probabilistic interpretation
DOI: 10.34740/kaggle/dsv/7480243
title: 📒 Meta Kaggle ported to MS SQL SERVER 2022 DB
DOI: 10.6084/m9.figshare.25062287
title: Metabolomics data for "Palmitic Acid in Type 2 Diabetes Mellitus Promotes Atherosclerotic Plaque Vulnerability via Macrophage Dll4 Signaling"

description: This research investigates the relationship between elevated levels of palmitic acid, a saturated fatty acid, and the increased vulnerability of atherosclerotic plaques in individuals with Type 2 Diabetes Mellitus (T2DM). The study centers on understanding how palmitic acid influences plaque stability, a critical factor in cardiovascular risks associated with T2DM.
DOI: 10.6084/m9.figshare.25062251
title: Revisiting the speaker discriminatory power of vowel formant frequencies

description: The data comprises of vowel formant and vowel duration values for two speaking styles: Dialogue and Interview.Acoustic-phonetic parameters:<br>• F1: the first formant frequency in Hertz measured at oral vowels mid-points;<br>• F2: the second formant frequency in Hertz measured at oral vowels mid-points;<br>• F3: the third formant frequency in Hertz measured at oral vowels mid-points;<br>• F4: the fourth formant frequency in Hertz measured at oral vowels mid-points;<br>• Vowel duration: defined as the duration of oral monophthongs including the seven phonemic vowels<br>of Brazilian PortugueseThe participants are 20 subjects, all male, Brazilian Portuguese (BP) speakers from the same dialectal area (state of Alagoas). Each speaker is coded with a letter and a different letter number, e.g., A1, A2, B1, B2, C1, C2.The "Random" column was employed to arrange the data order randomly during tests.
DOI: 10.5281/zenodo.10553453
title: Data for the paper "Global Analyses of Human Immune Variation Reveal Baseline Predictors of Postvaccination Responses" published in Cell in 2014

description: This dataset includes ready for the analysis flow cytomety, microarray, microneutralization titer and elispot data used in the paper.

https://www.cell.com/cell/fulltext/S0092-8674(14)00406-1

 

If you use this data for your work please cite the following publication:

Tsang JS, Schwartzberg PL, Kotliarov Y, Biancotto A, Xie Z, Germain RN, Wang E, Olnes MJ, Narayanan M, Golding H, Moir S, Dickler HB, Perl S, Cheung F; Baylor HIPC Center; CHI Consortium. Global analyses of human immune variation reveal baseline predictors of postvaccination responses. Cell. 2014 Apr 10;157(2):499-513. doi: 10.1016/j.cell.2014.03.031. 

 

Abstract

A major goal of systems biology is the development of models that accurately predict responses to perturbation. Constructing such models requires the collection of dense measurements of system states, yet transformation of data into predictive constructs remains a challenge. To begin to model human immunity, we analyzed immune parameters in depth both at baseline and in response to influenza vaccination. Peripheral blood mononuclear cell transcriptomes, serum titers, cell subpopulation frequencies, and B cell responses were assessed in 63 individuals before and after vaccination and were used to develop a systematic framework to dissect inter- and intra-individual variation and build predictive models of postvaccination antibody responses. Strikingly, independent of age and pre-existing antibody titers, accurate models could be constructed using pre-perturbation cell populations alone, which were validated using independent baseline time points. Most of the parameters contributing to prediction delineated temporally stable baseline differences across individuals, raising the prospect of immune monitoring before intervention.

 

Please contact Dr. John Tsang (john.tsang@yale.edu) for questions regarding this data.
DOI: 10.5281/zenodo.10553454
title: Data for the paper "Global Analyses of Human Immune Variation Reveal Baseline Predictors of Postvaccination Responses" published in Cell in 2014

description: This dataset includes ready for the analysis flow cytomety, microarray, microneutralization titer and elispot data used in the paper.

https://www.cell.com/cell/fulltext/S0092-8674(14)00406-1

 

If you use this data for your work please cite the following publication:

Tsang JS, Schwartzberg PL, Kotliarov Y, Biancotto A, Xie Z, Germain RN, Wang E, Olnes MJ, Narayanan M, Golding H, Moir S, Dickler HB, Perl S, Cheung F; Baylor HIPC Center; CHI Consortium. Global analyses of human immune variation reveal baseline predictors of postvaccination responses. Cell. 2014 Apr 10;157(2):499-513. doi: 10.1016/j.cell.2014.03.031. 

 

Abstract

A major goal of systems biology is the development of models that accurately predict responses to perturbation. Constructing such models requires the collection of dense measurements of system states, yet transformation of data into predictive constructs remains a challenge. To begin to model human immunity, we analyzed immune parameters in depth both at baseline and in response to influenza vaccination. Peripheral blood mononuclear cell transcriptomes, serum titers, cell subpopulation frequencies, and B cell responses were assessed in 63 individuals before and after vaccination and were used to develop a systematic framework to dissect inter- and intra-individual variation and build predictive models of postvaccination antibody responses. Strikingly, independent of age and pre-existing antibody titers, accurate models could be constructed using pre-perturbation cell populations alone, which were validated using independent baseline time points. Most of the parameters contributing to prediction delineated temporally stable baseline differences across individuals, raising the prospect of immune monitoring before intervention.

 

Please contact Dr. John Tsang (john.tsang@yale.edu) for questions regarding this data.
DOI: 10.14278/rodare.2670
title: Data publication: The origin of native metal-arsenide mineralization in the world-class Schlema-Alberoda uranium deposit (Germany): Insights from arsenide compositions and fluid inclusion systematics

description: This dataset contains the mineral descriptions, mineral chemical compositions and fluid inclusion data from the samples investigated in the study as well as the analytical parameters for the analytical methods used.
DOI: 10.14278/rodare.2669
title: Data publication: The origin of native metal-arsenide mineralization in the world-class Schlema-Alberoda uranium deposit (Germany): Insights from arsenide compositions and fluid inclusion systematics

description: This dataset contains the mineral descriptions, mineral chemical compositions and fluid inclusion data from the samples investigated in the study as well as the analytical parameters for the analytical methods used.
DOI: 10.25921/vh6g-a509
title: Passive Acoustic Monitoring of North Atlantic Right Whales in Inshore Gulf of Maine
DOI: 10.34740/kaggle/dsv/7480319
title: MoviesDatasets
DOI: 10.34740/kaggle/dsv/7480322
title: Mahanagar Yatayat Transport Dataset
DOI: 10.5281/zenodo.10566824
title: GaAs training data visualization

description: A collection of Ga(x)As(1-x) structures to train a MLIP, including force and energy data. 

The structures are stored in extended xyz format, and have been converted to have structural data expressed in Å, energies in eV, and forces in eV/Å. 

The data also contains a gzipped json file that can be visualized using http://chemiscope.org
DOI: 10.5281/zenodo.10566825
title: GaAs training data visualization

description: A collection of Ga(x)As(1-x) structures to train a MLIP, including force and energy data. 

The structures are stored in extended xyz format, and have been converted to have structural data expressed in Å, energies in eV, and forces in eV/Å. 

The data also contains a gzipped json file that can be visualized using http://chemiscope.org
DOI: 10.5281/zenodo.7545346
title: Simulation code and simulated data for: Transient polymorphisms in parental care strategies drive divergence of sex roles

description: This repository contains C++ code, simulated datasets, an R-script for data analysis and a Mathematica notebook for mathetical analysis relating to the research: <strong>Transient polymorphisms in parental care strategies drive divergence of sex roles</strong> Datasets are organised into ZIP files named after the corresponding figure in the publication. All of the figures based on simulation data in the manuscript and supplementary materials can be created with the R-script. For further information see the manuscript (2023-07-04).
DOI: 10.5281/zenodo.8111834
title: Simulation code and simulated data for: Transient polymorphisms in parental care strategies drive divergence of sex roles

description: This repository contains C++ code, simulated datasets, an R-script for data analysis and a Mathematica notebook for mathetical analysis. Datasets are organised into ZIP files named after the corresponding figure in the publication. All of the figures based on simulation data in the manuscript and supplementary materials can be created with the R-script. For further information see the manuscript (2023-07-04).
DOI: 10.5281/zenodo.8114131
title: Simulation code and simulated data for: Transient polymorphisms in parental care strategies drive divergence of sex roles

description: This repository contains C++ code, simulated datasets, an R-script for data analysis and a Mathematica notebook for mathetical analysis.
Datasets are organised into ZIP files named after the corresponding figure in the publication. All of the figures based on simulation data in the manuscript and supplementary materials can be created with the R-script. For further information see the article published in Nature Communications (doi: https://doi.org/10.1038/s41467-023-42607-6).
DOI: 10.5281/zenodo.7545268
title: Simulation code and simulated data for: Transient polymorphisms in parental care strategies drive divergence of sex roles

description: This repository contains C++ code, simulated datasets, an R-script for data analysis and a Mathematica notebook for mathetical analysis.
Datasets are organised into ZIP files named after the corresponding figure in the publication. All of the figures based on simulation data in the manuscript and supplementary materials can be created with the R-script. For further information see the article published in Nature Communications (doi: https://doi.org/10.1038/s41467-023-42607-6).
DOI: 10.25934/pr00009746
title: PROPHECY: Preprandial Optimized Glucose Prediction with Objective Physical Exercise andCarbohydrate Estimation for Insulin Calculation in Do-it-Yourself Systems

description: Our project proposes the creation of a novel intelligent tool to optimize the parameters that lead to the proposal of the preprandial insulin dose, incorporating an automatic glucose predictor based on deep learning that considers the impact of previous patient's physical activity. Additionally, we will build and integrate in the tool algorithms to calculate, in a personalized and dynamic way, the insulin sensitivity factor, active insulin and target glucose.
DOI: 10.6084/m9.figshare.24552160.v4
title: Article - MPS-Sampling

description: The data about the article of MPS-Sampling.MPS-Samping: data of the analysis from MPS-Sampling.There are two directories, one for GTDB and one for RiboDB.inputgenome_index.csvoutput4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X: there is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.MPS_links.csv: A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).MPS_representatives.csv: A file with one column, contain the MPS-representatives chosen by MPS-Sampling.phylogeny: data about the phylogenetic inference.There are four datasets: Bacillaceae, Bacterial backbone, Enterobacteriaceae and Lactobacillaceae. For each dataset, there are two files:concat_cleaned.fst: the supermatrix used for the phylogenetic inference.FastTree_iTOL.nw: the inferred phylogeny, as it was used on iTOL.
DOI: 10.5281/zenodo.10568960
title: Academic Records management systems (ARMS) and students Academic Records maintenance in Nigerian Universities
DOI: 10.5281/zenodo.10568961
title: Academic Records management systems (ARMS) and students Academic Records maintenance in Nigerian Universities
DOI: 10.6084/m9.figshare.24552160
title: Article - MPS-Sampling

description: All the data about the article of MPS-Sampling.MPS-Samping (data of the analysis from MPS-Sampling)ADB (Artificial genomes generated from RiboDB data)datafasta.tar.gz (a file to unzip, containing all the protein sequences from GTDB)genome_index (the index csv file used by MPS-Sampling)SamplesSample_X (a directory for each tested sample)inputgenome_index (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_0.4MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)GTDB (Genome-Based Database)inputfasta.tar.gz (a file to unzip, containing all the protein sequences from GTDB)genome_index.csv (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X (There is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.)MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)RiboDB (Ribosomal Database)inputfasta.tar.gz (a file to unzip, containing all the protein sequences from RiboDB, after filtering)genome_index.csv (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X (There is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.)MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)phylogeny (data about the phylogenetic inference)Bacillaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Bacterial backboneconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Enterobacteriaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Lactobacillaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)<br>
DOI: 10.6084/m9.figshare.24552160.v5
title: Article - MPS-Sampling

description: All the data about the article of MPS-Sampling.MPS-Samping (data of the analysis from MPS-Sampling)ADB (Artificial genomes generated from RiboDB data)datafasta.tar.gz (a file to unzip, containing all the protein sequences from GTDB)genome_index (the index csv file used by MPS-Sampling)SamplesSample_X (a directory for each tested sample)inputgenome_index (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_0.4MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)GTDB (Genome-Based Database)inputfasta.tar.gz (a file to unzip, containing all the protein sequences from GTDB)genome_index.csv (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X (There is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.)MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)RiboDB (Ribosomal Database)inputfasta.tar.gz (a file to unzip, containing all the protein sequences from RiboDB, after filtering)genome_index.csv (the index csv file used by MPS-Sampling)output4.MPS_results_directorye_value_1e-05_cov_mode_0_min_cov_0.8_min_seq_id_0.6delta_X (There is a directory for each delta from {0.05, 0.1, ... , 0.95, 1}.)MPS_links.csv (A file with two columns, containing the link between each original genome (first column) and its MPS-representative (second column).)MPS_representatives.csv (A file with one column, contain the MPS-representatives chosen by MPS-Sampling.)phylogeny (data about the phylogenetic inference)Bacillaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Bacterial backboneconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Enterobacteriaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)Lactobacillaceaeconcat_cleaned.fst (the supermatrix used for the phylogenetic inference)FastTree_iTOL.nw (the inferred phylogeny, as it was used on iTOL)<br>
DOI: 10.57745/lciirk
title: new_template_TEMPO_FORET_v24_FR_light_cm_Sen2_doi.xlsx

description: Data file
DOI: 10.57745/tt1nnn
title: new_template_TEMPO_FORET_v24_FR_light_cm_deb2_doi.xlsx
DOI: 10.57745/kjpyld
title: metadata.xml

description: EML metadata file
DOI: 10.57745/xt6qsj
title: new_template_TEMPO_FORET_v24_FR_light_cm_deb2_doi.xlsx

description: Data file
DOI: 10.25934/pr00009762
title: Country comparison of AMR data to local data 

description: This research aims to utilise and compare different antibiotic use metrics within a tertiary facility alongside resistance prevalence from longitudinal AMR data in a Ghanaian tertiary facility to guide empiric prescribing and inform antimicrobial stewardship interventions. National data is needed to situate the results within a national context and identify any similar or divergent trends in resistance.
DOI: 10.21942/uva.25061849
title: ASCADv2 for Protected Implementation

description: ASCADv2 dataset in matlab format
<br>
https://www.data.gouv.fr/en/datasets/ascadv2/
<br>
contains only ascadv2-extracted.h5
DOI: 10.21942/uva.25061849.v1
title: ASCADv2 for Protected Implementation

description: ASCADv2 dataset in matlab format
<br>
https://www.data.gouv.fr/en/datasets/ascadv2/
<br>
contains only ascadv2-extracted.h5
DOI: 10.23719/1524239
title: Birth Defects Metadata 2021

description: This dataset describes birth outcomes (weight, gestational age, sex assigned at birth, presence of birth defects, etc.) and parental factors (age, address, health status, etc.) for people born in North Carolina between 2003 and 2015.
DOI: 10.5281/zenodo.10569020
title: Results Summary: Genome-wide analysis for the quantification of gene flux in E.coli
DOI: 10.5281/zenodo.10569021
title: Results Summary: Genome-wide analysis for the quantification of gene flux in E.coli
DOI: 10.6084/m9.figshare.25062413
title: 来源日期

description: 精确合成具有明确结构和化学性质的碳基纳米结构对有机纳米材料具有重要意义，但仍具有挑战性。在此，我们报道了氮掺杂多孔碳纳米带（NPCNs）通过逐步表面聚合的合成。扫描隧道显微镜表明，分子构象的选择性、分子间脱溴芳基-芳基偶联和链间脱氢交叉偶联决定了最终产物的明确拓扑结构和化学性质。密度泛函理论计算预测，带状是半导体，带隙可以通过带状的宽度来调整。
DOI: 10.5281/zenodo.10568984
title: African Swine Fever on Borneo 2020-2023

description: All records of African Swine Fever reported Pig deaths and absences reported to and found by the Babi Hutan Project between 2021 and the beginning of 2023. Exact locations of pigs reported as well as general locations reported in newspapers.
DOI: 10.5281/zenodo.10569029
title: Data with readings from the air quality and meteo station from May 2023 in Poznan, Poland

description: Data with readings from the air quality and meteo station from May 2023 in Poznan.
DOI: 10.5281/zenodo.10569030
title: Data with readings from the air quality and meteo station from May 2023 in Poznan, Poland

description: Data with readings from the air quality and meteo station from May 2023 in Poznan.