cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8tc13/1
title: Weese et al Dryad data

description: This excel file has two tabs: one of the tabs has the data for the soil inoculation experiment (“experiment 1, see manuscript), the other tab has the data for the genetic effects experiment (“experiment 2, see manuscript). Below are descriptions of the variables in this data file. More information is in the manuscript.plantid: randomly assigned plant ID number.shootmass: dry above ground mass of individual experimental plant (units is grams).leafnum: number of leafs counted on an individual experimental plantstolonnum: number of stolons counted on an individual experimental plantnodulenum: number of nodules counted on an individual experimental plantMassofNodules: mass of 1st 100 nodules (approximately, see  “Nodulesintube” variable) taken from an individual experimental plant. Units is grams.NodulesinTube: the number of nodules that were weighted in for the “MassofNodules” variablemeannodulemass: estimated average mass of a nodule sampled from an individual experimental plant, calculated by dividing the “MassofNodules” variable by the “NodulesinTube” variabletotalnodulemass: estimated total mass of all nodules for an individual experimental plant, calculated by multiplying “meannodulemass” variable by “nodulenum” variableChlor: measured chlorophyll level for an individual experimental plant (no units)Harvester: initials of individual that harvested an individual experimental plant.Harvestdate: date that an individual exerperimental plant was harvested.Harvestday: number of days that had past since the 1st experimental plant was harvested.strain: identity of rhizobia strain that inoculated that particular experimental plantnitrogen: describes whether the particular rhizobia strain inoculating this experimental plant was originally sampled from a fertilized field plot (1) or a nonfertilized field plot (0)field: LTER T7 experimental field from which the particular rhizobia strain inoculating this experimental plant was originally sampled fromplot: label associated with a particular plot within a particular LTER T7 field coded thusly: 1A = the nonfertilized subplot of LTER field 1, 1B = the fertilized subplot of LTER field 1, 2A = the nonfertilized subplot of LTER field 2, 2B = the fertilized subplot of LTER field 2, and so on…plantspori: Trifolium species from which a particular rhizobia strain was isolated during the soil inoculation experimentplantpopori: particular population (associated with a Trifolium species) from which a particular rhizobia strain was isolated during the soil inoculation experimentplantssprear: Trifolium species of that particular experiment plantplantpoprear: population (associated with a Trifolium species) of that particular experimental plant.
DOI: 10.5061/dryad.c6fb2/1
title: Sashin steelhead

description: Quality filtered Illumina single read 100bp sequences.
DOI: 10.5061/dryad.c6fb2/2
title: Sashin rainbows

description: Quality filtered Illumina 100bp single end reads.
DOI: 10.5061/dryad.c6fb2/3
title: LSC steelhead

description: Quality filtered single 100 bp reads
DOI: 10.5061/dryad.c6fb2/4
title: LSC rainbows

description: Quality filtered 100 bp Illumina single end reads
DOI: 10.5061/dryad.gp302/2
title: Environmental data Damma depths

description: Environmental and qPCR data collected in different soil depths in a successional gradient formed after glacier retreat. R script summarizing the statistical analyses conducted on the data.
DOI: 10.5061/dryad.gp302/3
title: Damma_Depth_OTU_data

description: Abundances and taxonomic paths of OTUs identified in various depths of different stages of soil development after retreat of the Damma glacier.
DOI: 10.5061/dryad.gp302/4
title: DNA_seqs_MEC2014

description: Quality-checked sequences from bacteria and fungi retrieved from various depths in different stages of soil development formed after retreat of the Damma glacier.
DOI: 10.5061/dryad.n5f89/1
title: 16s OTU table

description: This is an excel sheet containing the OTU table of 16S rRNA amplicon pyrosequencing.
DOI: 10.5061/dryad.n5f89/2
title: alk B OTU table

description: This is an excel sheet with OTU table for alkane hydroxylase (alkB) gene.
DOI: 10.5061/dryad.n5f89/3
title: EDO OTU table

description: OTU table for extradiol dioxygenase(edo) gene.
DOI: 10.5061/dryad.17m4h/1
title: Sons and their genetic fathers morphological data
DOI: 10.5061/dryad.17m4h/2
title: adult male trait distribution
DOI: 10.5061/dryad.r8s59/1
title: Background matching ability and the maintenance of a colour polymorphism in the red devil cichlid

description: This is an excel file containing RGB scores that we used to analyse the background matching ability of color morphs in a polymorphic species. The file contains the raw data, the sum of RGB values and the grey standard values.
DOI: 10.5061/dryad.26m66/1
title: Supplementary_data_1

description: Specimens analyzed indicating collection number, species, and views included. CV- ventral view of cranium, AHu- cranial view of the distal extreme of humerus, LAx- lateral view of axis, LEs- lateral view of scapula, LIP- lateral view of pelvis, LUl- lateral view of ulna, LVI- lateral view of sixth cervical vertebra, LM- lateral view of mandible, PFe- caudal view of the proximal extreme of femur
DOI: 10.5061/dryad.26m66/2
title: Supplementary_data_2

description: Supplementary Data 2. List of landmark configurations including number of landmarks (first column) and its description (second column) for each view analyzed.  Semi-landmarks in axis and sixth cervical are indicated with an asterisk.
DOI: 10.5061/dryad.26m66/3
title: Supplementary_data_3

description: Supplementary Data 3. Description of the standardization procedure followed to simultaneously analyze several landmark configurations. A discussion about the different possible approaches to standardized landmark data is also included.
DOI: 10.5061/dryad.26m66/4
title: Supplementary_data 4

description: Supplementary Data 4. Topology and taxonomic groups used as reference for evaluation of the effect of the inclusion of an increasing number of landmark configurations.   The backbone topology was derived from Sato et al. (2013). The phylogenetic relationships within procyonids are based on Koepfli et al. (1997). The phylogenetic relationships within mustelids were derived from Sato et al. (2013) with a complementary use of Koepfli & Wayne (1998) and Koepfli et al. (2008).
DOI: 10.5061/dryad.26m66/5
title: Supplementary Data 5

description: Supplementary Data 5. Trees where data shown in Table 2 is based on.
DOI: 10.5061/dryad.26m66/7
title: Supplementary Data 7

description: Supplementary Data 7. Dataset and best tree obtained considering the 9 configurations. The script used to run the analysis in TNT (land_searches.run) is also included.
DOI: 10.5061/dryad.26m66/8
title: Supplementary_data_6

description: Supplementary Data 6. Complementary analyses conducted in order to evaluate if different methodological decisions made during the analyses (method of superimposition, standardization procedure, presence of missing data, phylogeny used as reference) affect the main conclusions obtained in the present study.
DOI: 10.5061/dryad.mr3g6/1
title: Simulated-biological-datasets
DOI: 10.5061/dryad.mr3g6/5
title: Appendix-1
DOI: 10.5061/dryad.mr3g6/4
title: coalescenceSIM

description: Coalescence based simulated data sets
DOI: 10.5061/dryad.7pd40/1
title: Whalanetal_Dryad_Plosone2014
DOI: 10.5061/dryad.34qm4/1
title: MrBayes phylogenetic analysis: DNA and morphology

description: This is the MrBayes phylogenetic analyses of the total evidence data: DNA and morphology
DOI: 10.5061/dryad.34qm4/2
title: MrBayes phylogenetic analysis of only molecular data

description: This is the MrBayes phylogenetic analysis of only the molecular data (four concatenated genetic markers)
DOI: 10.5061/dryad.34qm4/3
title: MrBayes phylogenetic analysis only morphology

description: This is the MrBayes phylogenetic analysis of only the morphological data
DOI: 10.5061/dryad.34qm4/4
title: Divergence dating analysis in BEAST

description: This is the divergence dating analysis performed in BEAST
DOI: 10.5061/dryad.34qm4/5
title: Divergence dating analysis in BEAST including additional Australian taxa, Supp Info

description: This is the divergence dating analysis performed in BEAST that includes the additional Australian taxa. The results from this analysis is shown and discussed in the Supplementary Information. The additional Australian taxa sequences are taken from Rix and Harvey (2012), see Supplementary Information for full citation.
DOI: 10.5061/dryad.34qm4/6
title: Brownie analysis of morphological measurements

description: The censored rate test of morphological data, performed in Brownie v.2.1. This analysis can be performed treating Madagascar as one group or as two groups as defined in the analysis.
DOI: 10.5061/dryad.34qm4/7
title: Brownie analysis of habitat

description: The censored rate test of habitat data, performed in Brownie v.2.1. This analysis can be performed treating Madagascar as one group or as two groups as defined in the analysis.
DOI: 10.5061/dryad.6vf1s/1
title: Letnic et al. Restricting access to invasion hubs enables sustained control of an invasive vertebrate

description: Data for rainfall, counts of dead toads and live toads
DOI: 10.5061/dryad.d6b23.2/1.2
title: Table 1

description: Current abortion legislations based on criminal exemptions from prosecution of abortion in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation.
DOI: 10.5061/dryad.d6b23.2/2.2
title: Table 2

description: Average change per year in different maternal mortality outcomes by place of residence and occurrence in groups of Mexican states with more or less permissive abortion legislation and the entire country (2002-2011) based on Autoregressive Integrated Moving Average (ARIMA) models.
DOI: 10.5061/dryad.d6b23.2/3.2
title: Table 3

description: Comparative analysis of average mortality outcomes by residence and occurrence for groups of Mexican states exhibiting a more or less permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/4.2
title: Table 4

description: Comparative analysis of average mortality outcomes by residence and occurrence for groups of states with or without constitutional amendment protecting the unborn from conception, 2008-2011.
DOI: 10.5061/dryad.d6b23.2/10.2
title: Box 1

description: Evidence-based public health interventions to improve maternal health in Mexico.
DOI: 10.5061/dryad.d6b23.2/11.2
title: Table S1

description: Detailed description of independent variables considered in the natural experiment of 32 Mexican states on maternal mortality outcomes.
DOI: 10.5061/dryad.d6b23.2/12.2
title: Table S2

description: Observed live births by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/13.2
title: Table S3

description: Observed live births by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/5.2
title: Table 5

description: Independent variables in each Mexican state: frequencies and analyses of normal distribution.
DOI: 10.5061/dryad.d6b23.2/6.2
title: Table 6

description: Univariate associations between 10 independent variables and maternal mortality outcomes for 32 Mexican states, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/7.2
title: Table 7

description: Explanatory models for trends on maternal mortality ratio (MMR), maternal mortality ratio with an abortive outcome (MMRAO), and induced abortion mortality ratio (iAMR) in 32 Mexican states after refinement, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/8.2
title: Table 8

description: Alternative explanatory regression models for MMR, MMRAO and iAMR after refinement considering independent variables excluded from the explanatory models because of collinearity.
DOI: 10.5061/dryad.d6b23.2/9.2
title: Table 9

description: Comparison of different indicators of maternal healthcare and human development between groups of states with less and more permissive abortion legislation.
DOI: 10.5061/dryad.d6b23.2/14.2
title: Table S4

description: Total maternal deaths by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/15.2
title: Table S5

description: Maternal deaths with abortive outcome by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/16.2
title: Table S6

description: Induced abortion-related deaths by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/17.2
title: Table S7

description: Total maternal deaths by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/18.2
title: Table S8

description: Maternal deaths with abortive outcome by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/19.2
title: Table S9

description: Induced abortion-related deaths by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/20.2
title: Table S10

description: Maternal mortality ratio (MMR) by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/21.2
title: Table S11

description: Maternal mortality ratio with abortive outcome (MMRAO) by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/22.2
title: Table S12

description: Induced abortion mortality ratio (iAMR) by place of residence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/23.2
title: Table S13

description: Maternal mortality ratio (MMR) by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/24.2
title: Table S14

description: Maternal mortality ratio with abortive outcome (MMRAO) by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/25.2
title: Table S15

description: Induced abortion mortality ratio (iAMR) by place of occurrence in 32 Mexican states exhibiting a more (m) or less (l) permissive abortion legislation, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/26.2
title: Table S16

description: Explanatory models for trends on maternal mortality ratio (MMR), maternal mortality ratio with an abortive outcome (MMRAO), and induced abortion mortality ratio (iAMR) in 32 Mexican states before refinement, 2002-2011.
DOI: 10.5061/dryad.d6b23.2/27.2
title: Figure 1

description: Mortality ratios and the proportion of abortion-related deaths by place of residence in states with less and more permissive abortion legislation. Left panels illustrate trends in MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of residence between 2002 and 2011 in Mexican states, grouped as with less permissive (in dark green) or more permissive (in cyan) in terms of abortion legislation in their criminal code (see Material and Methods). For comparison, trends for the whole Mexican country (all states) are depicted as dotted lines. Right panels show average ratios and proportion of abortion-related deaths for each group (dark green and cyan bars, respectively), and the whole Mexican country (hollow bars). * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with an abortive outcome.
DOI: 10.5061/dryad.d6b23.2/28.2
title: Figure 2

description: Mortality ratios and the proportion of abortion-related deaths by place of occurrence in states with less and more permissive abortion legislation. Left panels illustrate trends in MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of occurrence between 2002 and 2011 in Mexican states, grouped as with less permissive (in dark green) or more permissive (in cyan) in terms of abortion legislation in their criminal code (see Material and Methods). For comparison, trends for the whole Mexican country (all states) are depicted as dotted lines. Right panels show average ratios and proportion of abortion-related deaths for each group (dark green and cyan bars, respectively), and the whole Mexican country (hollow bars). * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.
DOI: 10.5061/dryad.d6b23.2/29.2
title: Figure 3

description: Average mortality ratios in states with more or less permissive abortion legislation between 2002 and 2011. Political maps of Mexican states are shown for average MMR (top panel) and average iAMR (bottom panel) for the 2002-2011 period, indicating whether they exhibit less (orange dots) or more (yellow dots) permissive abortion legislation, in terms of abortion legislation in their criminal code (see Material and Methods). Increasing blue colour indicates an increase in MMR or iAMR, on a quintile scale (see legend of each panel). Abbreviations: Ag., Aguascalientes; Co., Colima; FD., Federal District; iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; Mo., Morelos; Tl., Tlaxcala.
DOI: 10.5061/dryad.d6b23.2/30.2
title: Figure 4

description: Mortality ratios and the proportion of abortion-related deaths by place of residence in states with or without a constitutional amendment to protect the unborn starting at conception. Left panels illustrate trends for MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of residence between 2008 and 2011 in Mexican states, grouped as with amendment (in dark green) or without amendment (in cyan) in terms of abortion legislation in their criminal code (see Material and Methods). Right panels show average ratios and proportion of abortion-related deaths for each group (dark green and cyan bars, respectively).  * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.
DOI: 10.5061/dryad.d6b23.2/31.2
title: Figure 5

description: Mortality ratios and the proportion of abortion-related deaths by place of occurrence in states with or without a constitutional amendment to protect the unborn starting at conception. Left panels illustrate trends for MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of occurrence between 2008 and 2011 in Mexican states, grouped as with amendment (in dark green) or without amendment (in cyan) in terms of exhibiting or not a constitutional amendment to protect the unborn starting at conception (Figure S1, Supplementary Material). Right panels show average ratios and proportion of abortion-related deaths for each group (dark green and cyan bars, respectively). * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.
DOI: 10.5061/dryad.d6b23.2/32.2
title: Figure 6

description: Mortality ratios and the proportion of abortion-related deaths by place of residence in states with or without a constitutional amendment to protect the unborn starting at conception: focus on the Federal District. Left panels illustrate trends for MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of residence between 2008 and 2011 in Mexican states, grouped as with amendment” (in dark green), without amendment (in cyan), and the Federal District (in green) in terms of exhibiting or not an constitutional amendment (the Federal District of Mexico was not included in this group to be illustrated separately) to protect the unborn starting at conception (Figure S1, Supplementary Material). Right panels show average ratios and proportion of abortion-related deaths for each group (dark green, cyan, and green bars, respectively). * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.
DOI: 10.5061/dryad.7kn5k/1
title: Vent barnacle sanger-based phylo

description: Alignment and tree files from maximum likelihood and bayesian inference phylogenetic analyses using sanger-based markers.
DOI: 10.5061/dryad.bj86g/1
title: Female Color Morph Counts

description: The file reports the counts in female color morphs of damselflies (I. elegans) in 12 ponds of southern Sweden, for 12 consecutive years (2000 to 2011). The number of females of each morph (A, I, and O) is reported in three distinct tables (years as lines, populations as columns). The file is formatted such that it can be read by our statistical program.
DOI: 10.5061/dryad.bj86g/2
title: final_scripts

description: This ZIP file contains all scripts and code to reproduce the statistical analyses of our paper. Programs R and ADMB should be installed on the computer. Scripts were run on a Linux/Ubuntu operating system. Directory 'analysis': scripts to generate the figures (there could be minor differences compared to the published version). Directory 'data' contains the data (same file as already published on Dryad). Directory 'model' contains the ADMB code to run the model (should be compiled with ADMB). Directory 'suppl' contains the material necessary to run the supplementary analyses, including simulations and tests for the robustness of the model. Note that this supplementary analyses were run on a powerful server and may require a significant amount of computational power.
DOI: 10.5061/dryad.d6b23.1
title: Data from: Abortion legislation, maternal healthcare, fertility, female literacy, sanitation, violence against women, and maternal deaths: a natural experiment in 32 Mexican states
DOI: 10.5061/dryad.d6b23.2/33.2
title: Figure 7

description: Mortality ratios and the proportion of abortion-related deaths by place of occurrence in states with or without constitutional amendment to protect the unborn starting at conception: focus on the Federal District. Left panels illustrate trends for MMR (top panel), MMRAO (middle top panel), iAMR (middle bottom panel), and the proportion of abortion-related deaths (bottom panel) by place of occurrence between 2008 and 2011 in Mexican states, grouped as with amendment (in dark green), without amendment (in cyan), and the Federal District (in green) in terms of exhibiting or not a constitutional amendment (the Federal District of Mexico was not included in this group to be illustrated separately) to protect the unborn starting at conception (Figure S1, Supplementary Material). Right panels show average ratios and proportion of abortion-related deaths for each group (dark green, cyan, and green bars, respectively). * p&lt;0.05 using Z-test. Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.
DOI: 10.5061/dryad.d6b23.2/34.2
title: Figure 8

description: Proportional contribution of independent variables to observed differences in maternal mortality outcomes among Mexican states in primary and alternative multivariate regression models.  Abbreviations: iAMR, induced abortion mortality ratio; MMR, maternal mortality ratio; MMRAO, maternal mortality ratio with abortive outcome.