cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10731167.v1
title: MOESM1 of Amphicrine carcinoma of the stomach and intestine: a clinicopathologic and pan-cancer transcriptome analysis of a distinct entity

description: Additional file 1: Table S1. Enriched KEGG pathways of 18 genes within network (p value &lt;0.05).
DOI: 10.6084/m9.figshare.17010277
title: Additional file 8 of A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit

description: Additional file 8. The reported distant eQTL for enzyme genes in sugar, organic acids, aroma metabolism pathway.
DOI: 10.6084/m9.figshare.17010274.v1
title: Additional file 7 of A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit

description: Additional file 7. The reported local eQTL for enzyme genes in sugar, organic acids, aroma metabolism pathway.
DOI: 10.6084/m9.figshare.21741250
title: Recent (2018–2021) glaciological, hydrological and geomorphological landscape changes of Hailuogou Glacier tongue, southeastern Tibetan Plateau

description: Glaciers in the Tibetan Plateau are melting at an unprecedented recently rate in the context of global warming. Time-sequenced landform mapping for the Hailuogou Glacier, a partly debris-covered glacier in the southeastern Tibetan Plateau, shows the detailed evolution of glacier changes as the ice recedes. This study presents four maps of the Hailuogou Glacier tongue, a partly debris-covered glacier in the southeastern Tibetan Plateau, documenting the spatial evolution of glaciological, hydrological, and geomorphological features from 2018 to 2021. Structure from Motion with Multiview Stereo software was applied to images captured by from uncrewed aerial vehicles were used to produce digital surface models and orthophoto mosaics. These datasets were used, and then to identify and map the features based on pre-defined mapping criteria. From 2018 to 2021, the glacier underwent continuous recession, with the terminus retreating, intense crevassing in the lower part of the ablation zone, and continuous expansion of the terminal disintegration area. The recent evolution of the glacier implies that the gradual disintegration of the lower glacier tongue is likely to be exacerbated over the next decades by the continuous climate warming.
DOI: 10.6084/m9.figshare.21741250.v1
title: Recent (2018–2021) glaciological, hydrological and geomorphological landscape changes of Hailuogou Glacier tongue, southeastern Tibetan Plateau

description: Glaciers in the Tibetan Plateau are melting at an unprecedented recently rate in the context of global warming. Time-sequenced landform mapping for the Hailuogou Glacier, a partly debris-covered glacier in the southeastern Tibetan Plateau, shows the detailed evolution of glacier changes as the ice recedes. This study presents four maps of the Hailuogou Glacier tongue, a partly debris-covered glacier in the southeastern Tibetan Plateau, documenting the spatial evolution of glaciological, hydrological, and geomorphological features from 2018 to 2021. Structure from Motion with Multiview Stereo software was applied to images captured by from uncrewed aerial vehicles were used to produce digital surface models and orthophoto mosaics. These datasets were used, and then to identify and map the features based on pre-defined mapping criteria. From 2018 to 2021, the glacier underwent continuous recession, with the terminus retreating, intense crevassing in the lower part of the ablation zone, and continuous expansion of the terminal disintegration area. The recent evolution of the glacier implies that the gradual disintegration of the lower glacier tongue is likely to be exacerbated over the next decades by the continuous climate warming.
DOI: 10.6084/m9.figshare.17010280
title: Additional file 9 of A systems genetics approach reveals PbrNSC as a regulator of lignin and cellulose biosynthesis in stone cells of pear fruit

description: Additional file 9. The reported local eQTL for genes in stone cell modules.
DOI: 10.6084/m9.figshare.12291767.v1
title: Additional file 2 of Linkage mapping and genome-wide association study reveals conservative QTL and candidate genes for Fusarium rot resistance in maize

description: Additional file 2:
DOI: 10.6084/m9.figshare.25219001
title: Supplementary Material for: rTMS for MDD in Huntington disease patient with improvement in neuropsychiatric and movement symptoms: a case report

description: Huntington disease (HD) is a progressive disorder characterized by significant neurodegeneration that results in severe neuropsychiatric symptoms and disordered movement. Repetitive Transcranial Magnetic Stimulation (rTMS) is a non-invasive treatment that has been used in major depressive disorder (MDD) with great success. We present a case of a patient with newly diagnosed HD, persistent MDD with suicidal ideation (SI), and generalized anxiety disorder (GAD) who was treated with rTMS and had sustained significant improvement of her mood disorder with additional improvement of her movement disorder. This result brings into question the use of rTMS to treat HD, especially early in its course.
DOI: 10.6084/m9.figshare.25219001.v1
title: Supplementary Material for: rTMS for MDD in Huntington disease patient with improvement in neuropsychiatric and movement symptoms: a case report

description: Huntington disease (HD) is a progressive disorder characterized by significant neurodegeneration that results in severe neuropsychiatric symptoms and disordered movement. Repetitive Transcranial Magnetic Stimulation (rTMS) is a non-invasive treatment that has been used in major depressive disorder (MDD) with great success. We present a case of a patient with newly diagnosed HD, persistent MDD with suicidal ideation (SI), and generalized anxiety disorder (GAD) who was treated with rTMS and had sustained significant improvement of her mood disorder with additional improvement of her movement disorder. This result brings into question the use of rTMS to treat HD, especially early in its course.
DOI: 10.6084/m9.figshare.10731254
title: MOESM2 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 2 The table contains reference genes and DEGs identified by DDR in TCGA-BRCA RNA-Seq data.
DOI: 10.6084/m9.figshare.10731254.v1
title: MOESM2 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 2 The table contains reference genes and DEGs identified by DDR in TCGA-BRCA RNA-Seq data.
DOI: 10.6084/m9.figshare.14913213.v1
title: Additional file 3 of Unique Glutelin Expression Patterns and Seed Endosperm Structure Facilitate Glutelin Accumulation in Polyploid Rice Seed

description: Additional file 3: Dataset S1. The list of all proteins identified using LC-MS/MS in 9311-4x and 9311-2x (harvested in 2019).
DOI: 10.6084/m9.figshare.10731263
title: MOESM3 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 3 The table contains reference genes and DEGs identified by DDR in TCGA-LUAD RNA-Seq data.
DOI: 10.6084/m9.figshare.10731263.v1
title: MOESM3 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 3 The table contains reference genes and DEGs identified by DDR in TCGA-LUAD RNA-Seq data.
DOI: 10.6084/m9.figshare.14913225
title: Additional file 3 of Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

description: Additional file 3: Table S2. List of mouse MURK genes identified in Fig. 3B-C, ranked by calculated increase in slope value.
DOI: 10.6084/m9.figshare.14913222
title: Additional file 2 of Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

description: Additional file 2: Table S1. Driver genes of the scVelo predictions along erythroid differentiation, ranked by likelihood in the dynamic model.
DOI: 10.6084/m9.figshare.10731269
title: MOESM1 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 1: Table S1. List of 5734 and 222 DEmRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731269.v1
title: MOESM1 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 1: Table S1. List of 5734 and 222 DEmRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731272
title: MOESM4 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 4 The table contains reference genes and DEGs identified by DDR in prostate cancer microarray data from GEO (Accession: GSE62872).
DOI: 10.6084/m9.figshare.10731272.v1
title: MOESM4 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 4 The table contains reference genes and DEGs identified by DDR in prostate cancer microarray data from GEO (Accession: GSE62872).
DOI: 10.6084/m9.figshare.10731275
title: MOESM2 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 2: Table S2. List of 164 and 5 DElncRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731275.v1
title: MOESM2 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 2: Table S2. List of 164 and 5 DElncRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731278
title: MOESM5 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 5 The table contains “built-in” features of four selected biomarkers from TCGA-BRCA RNA-Seq data and microarray data from GEO (Accession: GSE27447) as input to classifiers.
DOI: 10.6084/m9.figshare.10731278.v1
title: MOESM5 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 5 The table contains “built-in” features of four selected biomarkers from TCGA-BRCA RNA-Seq data and microarray data from GEO (Accession: GSE27447) as input to classifiers.
DOI: 10.6084/m9.figshare.10731281
title: MOESM3 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 3: Table S3. Cis and trans targets of DElncRNAs.
DOI: 10.6084/m9.figshare.10731281.v1
title: MOESM3 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 3: Table S3. Cis and trans targets of DElncRNAs.
DOI: 10.34683/sr644
title: StoneRounds Case: SR644
title: Leber Congenital Amaurosis

description: StoneRounds Case SR644 was diagnosed with Leber Congenital Amaurosis likely caused by mutations in the gene: CEP290.
DOI: 10.6084/m9.figshare.10731284
title: MOESM6 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 6 The table contains DEGs identified by DDR in RNA-Seq data of Tumor-Educated Platelets from GEO (Accession: GSE68086).
DOI: 10.6084/m9.figshare.10731284.v1
title: MOESM6 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 6 The table contains DEGs identified by DDR in RNA-Seq data of Tumor-Educated Platelets from GEO (Accession: GSE68086).
DOI: 10.6084/m9.figshare.14913225.v1
title: Additional file 3 of Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation

description: Additional file 3: Table S2. List of mouse MURK genes identified in Fig. 3B-C, ranked by calculated increase in slope value.
DOI: 10.6084/m9.figshare.10731287
title: MOESM7 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 7 The table contains “built-in” features from Tumor-Educated Platelets (Accession: GSE68086) as input to classifiers.
DOI: 10.6084/m9.figshare.10731287.v1
title: MOESM7 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 7 The table contains “built-in” features from Tumor-Educated Platelets (Accession: GSE68086) as input to classifiers.
DOI: 10.6084/m9.figshare.10731290
title: MOESM4 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 4: Table S4. List of 45 and 17 DEcircRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731290.v1
title: MOESM4 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 4: Table S4. List of 45 and 17 DEcircRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731293
title: MOESM8 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 8 The table contains DEGs identified by DDR in microarray datasets of medulloblastoma from GEO (Accession: GSE37418, GSE21140 and GSE37382).
DOI: 10.6084/m9.figshare.10731293.v1
title: MOESM8 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 8 The table contains DEGs identified by DDR in microarray datasets of medulloblastoma from GEO (Accession: GSE37418, GSE21140 and GSE37382).
DOI: 10.6084/m9.figshare.10731296
title: MOESM5 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 5: Table S5. List of 147 and 130 DEmiRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731296.v1
title: MOESM5 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 5: Table S5. List of 147 and 130 DEmiRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731299
title: MOESM9 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 9 The table contains “built-in” features from medulloblastoma (Accession: GSE37418, GSE21140 and GSE37382) as input to classifiers.
DOI: 10.6084/m9.figshare.10731299.v1
title: MOESM9 of Multiplatform biomarker identification using a data-driven approach enables single-sample classification

description: Additional file 9 The table contains “built-in” features from medulloblastoma (Accession: GSE37418, GSE21140 and GSE37382) as input to classifiers.
DOI: 10.6084/m9.figshare.10731302
title: MOESM6 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 6: Table S6. DEmiRNAs targeted DEmRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731302.v1
title: MOESM6 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 6: Table S6. DEmiRNAs targeted DEmRNAs in the root and leaf, respectively.
DOI: 10.6084/m9.figshare.10731305
title: MOESM7 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 7: Table S7. Searched known Cu-related DEmRNAs by using the keywords reported in previous studies to query their functional descriptions.
DOI: 10.6084/m9.figshare.10731305.v1
title: MOESM7 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 7: Table S7. Searched known Cu-related DEmRNAs by using the keywords reported in previous studies to query their functional descriptions.
DOI: 10.6084/m9.figshare.10731308
title: MOESM8 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 8: Table S8. List of 1273 key DEmRNAs in response to Cu toxicity in citrus.
DOI: 10.6084/m9.figshare.10731308.v1
title: MOESM8 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 8: Table S8. List of 1273 key DEmRNAs in response to Cu toxicity in citrus.
DOI: 10.6084/m9.figshare.17022769
title: Human umbilical vein endothelial cells derived-exosomes promote osteosarcoma cell stemness by activating Notch signaling pathway

description: Osteosarcoma is one of the common primary malignant tumors of bone in adolescents. Human umbilical vein endothelial cells (HUVECs) derived exosomes are associated with osteosarcoma cell stemness. Little is known about the function of HUVECs-exosomes in osteosarcoma cell stemness. This work aimed to investigate the mechanism of action of HUVECs-exosomes in regulating stem cell-like phenotype of osteosarcoma cells. HUVECs were treated with GW4869 (exosome inhibitor). Human osteosarcoma cells (U2OS and 143B) were treated with HUVECs supernatant, HUVECs-exosomes with or without RO4929097 (γ secretase inhibitor, used to block Notch signaling pathway). We found that HUVECs supernatant and HUVECs-exosomes enhanced the proportions of STRO-1<sup>+</sup>CD117<sup>+</sup> cells and the expression of stem cell-related proteins Oct4 and Sox2. Both HUVECs supernatant and HUVECs-exosomes promoted the sarcosphere formation efficiency of U2OS and 143B cells. These stem-like phenotypes of U2OS and 143B cells conferred by HUVECs-exosomes were repressed by GW4869. Moreover, HUVECs-exosomes promoted the expression of Notch1, Hes1 and Hey1 in the U2OS and 143B cells. RO4929097 treatment reversed the impact of HUVECs-exosomes on Notch1, Hes1 and Hey1 expression by inhibiting Notch1 signaling pathway. In conclusion, this work demonstrated that HUVECs-exosomes promoted cell stemness in osteosarcoma through activating Notch signaling pathway. Thus, our data reveals the mechanism of HUVECs-exosomes in regulating cell stemness of osteosarcoma, and provides a theoretical basis for osteosarcoma treatment by exosomes.
DOI: 10.6084/m9.figshare.10731317
title: MOESM9 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 9: Table S9. List of primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.10731317.v1
title: MOESM9 of Whole-transcriptome RNA sequencing reveals the global molecular responses and ceRNA regulatory network of mRNAs, lncRNAs, miRNAs and circRNAs in response to copper toxicity in Ziyang Xiangcheng (Citrus junos Sieb. Ex Tanaka)

description: Additional file 9: Table S9. List of primers used in qRT-PCR.
DOI: 10.6084/m9.figshare.1294147
title: The cell cycle regulator ecdysoneless cooperates with H-Ras to promote oncogenic transformation of human mammary epithelial cells

description: The mammalian ortholog of Drosophila ecdysoneless (Ecd) gene product regulates Rb-E2F interaction and is required for cell cycle progression. Ecd is overexpressed in breast cancer and its overexpression predicts shorter survival in patients with ErbB2-positive tumors. Here, we demonstrate Ecd knock down (KD) in human mammary epithelial cells (hMECs) induces growth arrest, similar to the impact of Ecd Knock out (KO) in mouse embryonic fibroblasts. Furthermore, whole-genome mRNA expression analysis of control vs. Ecd KD in hMECs demonstrated that several of the top 40 genes that were down-regulated were E2F target genes. To address the role of Ecd in mammary oncogenesis, we overexpressed Ecd and/or mutant H-Ras in hTERT-immortalized hMECs. Cell cycle analyses revealed hMECs overexpressing Ecd+Ras showed incomplete arrest in G1 phase upon growth factor deprivation, and more rapid cell cycle progression in growth factor-containing medium. Analyses of cell migration, invasion, acinar structures in 3-D Matrigel and anchorage-independent growth demonstrated that Ecd+Ras-overexpressing cells exhibit substantially more dramatic transformed phenotype as compared to cells expressing vector, Ras or Ecd. Under conditions of nutrient deprivation, Ecd+Ras-overexpressing hMECs exhibited better survival, with substantial upregulation of the autophagy marker LC3 both at the mRNA and protein levels. Significantly, while hMECs expressing Ecd or mutant Ras alone did not form tumors in NOD/SCID mice, Ecd+Ras-overexpressing hMECs formed tumors, clearly demonstrating oncogenic cooperation between Ecd and mutant Ras. Collectively, we demonstrate an important co-oncogenic role of Ecd in the progression of mammary oncogenesis through promoting cell survival.
DOI: 10.6084/m9.figshare.13353074
title: Source Data.xlsx

description: Source Data are compiled in a single excel file
with data for each table in a separate sheet. The data comprise major and trace
element results for clinopyroxene, major element results for spinel and
plagioclase.<br>
DOI: 10.6084/m9.figshare.14913450.v1
title: Additional file 7 of The potential roles of m6A modification in regulating the inflammatory response in microglia

description: Additional file 7:. The associated analysis of mRNA expression level and methylation level between M2-L and M0-L
DOI: 10.6084/m9.figshare.23896737
title: Flower_visitors.xlsx

description: List of flower visitors of <i>Oberonia japonica</i>.
DOI: 10.6084/m9.figshare.23896737.v3
title: YS_Oberonia_Data.xlsx

description: List of flower visitors of <i>Oberonia japonica</i>.