cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nxkp6pcw9r.1
title: Supplementary materials provided for GENE

description: Supplementary materials described in the "Potential Targets for Synergistic Bipolar Irreversible Electroporation in Tumor Suppression through Transcriptomic s and Proteomics Analysis"
DOI: 10.17632/nxkp6pcw9r.2
title: Supplementary materials provided for GENE

description: Supplementary materials described in the "Potential Targets for Synergistic Bipolar Irreversible Electroporation in Tumor Suppression through Transcriptomic s and Proteomics Analysis"
DOI: 10.17632/b8fp5fr44v.1
title: Immediate glucose signaling transmitted via the vagus nerve in gut–brain neural communication

description: ・Transcranial_imaging_data file is the data corresponding to the main figures 2, 3, 6 and supplemental figure 1 in the paper. 
・Vagus_nerve_recording file ois the data corresponding to the main figures 1 and 6.
・Suppremental_fig_analyzed_data and main_fig_analyzed_data are the analyzed data of all figures in the paper.
DOI: 10.17632/msf32358k8
title: AMS 14C dating of the YS01 core

description: AMS 14C dating of the YS01 core
DOI: 10.17632/msf32358k8.1
title: AMS 14C dating of the YS01 core

description: AMS 14C dating of the YS01 core
DOI: 10.6084/m9.figshare.c.3595604_d1.v1
title: Additional file 1: of Follow-up practices for high-grade extremity Osteosarcoma

description: Bone Sarcoma Data Set. (CSV 6 kb)
DOI: 10.6084/m9.figshare.c.3595622_d1.v1
title: Additional file 6: of 
                     In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

description: Ontological categorization of 49 putative toxin transcripts. The M. pendula transcripts that were shown to have homology to venoms found in Hydra, other cnidarians, and/or the UniProt animal toxin database are shown. This includes function of matched toxin, domain structural analysis, and gene ontology (biological process, molecular function, cellular component). Sixteen of 49 toxins were observed to contain signal peptides. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3595622_d2.v1
title: Additional file 4: of 
                     In silico hybridization enables transcriptomic illumination of the nature and evolution of Myxozoa

description: Matches of Myxobolus pendula transcripts to Hydra proteomic sequences. Rows in which M. pendula transcripts matched significantly to Hydra magnipapillata proteomic sequences [22] are highlighted, and the top match using BLASTp against nr is indicated. A total of 82 out of 410 Hydra sequences returned significant matches. (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3595634_d1.v1
title: Additional file 2: of Brain activation in frontotemporal and Alzheimer’s dementia: a functional near-infrared spectroscopy study

description: Statistical source data for Fig. 3. Contrast of two groups each concerning the contrast of phonematic condition, semantic condition, and the control condition; grey background signifies significant contrasts. AD Alzheimer’s dementia, bvFTD behavioral variant of frontotemporal dementia, CAT category (semantic) condition, HC healthy controls, LET letter (phonematic) condition, WD weekday (control) condition. (XLSX 13 kb)
DOI: 10.15139/s3/daoth0
title: Replication Data for: Evidence of sex differences in ozone-induced oxysterol and cytokine levels in differentiated human nasal epithelial cells

description: Replication text for study analyzing the effects of acute ozone exposure on the nasal epithelial cells of human subjects. Study characterizes effects on sterol and oxysterol formation, as well as cytokine and chemokine production.
DOI: 10.5281/zenodo.14509604
title: Two-phase GRASP for the Multi-Constraint Graph Partitioning problem

description: Instances, source code and results for the algorithms described in the paper (please, cite as follows):

Alberto Herrán, J. Manuel Colmenar, Mauricio G.C. Resende. Two-phase GRASP for the Multi-Constraint Graph Partitioning problem, Computers & Operations Research, 2024, 106946, ISSN 0305-0548, https://doi.org/10.1016/j.cie.2024.110634.
description: The Multi-Constraint Graph Partitioning (MCGP) problem seeks a partition of the node set of a graph into a fixed number of clusters such that each cluster satisfies a collection of node-weight constraints and the total cost of the edges whose end nodes are in the same cluster is minimized. In this paper we propose a two-phase reactive GRASP heuristic to find near-optimal solutions to the MCGP problem. Our proposal is able to reach all the best known results for state-of-the-art instances, obtaining all the certified optimum values while spending only a fraction of the time in relation to the previous methods. To reach these results we have implemented an efficient computation method applied in the improvement phase. Besides, we have created a new set of larger instances for the MCGP problem and provided detailed results for future comparisons.
DOI: 10.5281/zenodo.14509605
title: Two-phase GRASP for the Multi-Constraint Graph Partitioning problem

description: Instances, source code and results for the algorithms described in the paper (please, cite as follows):

Alberto Herrán, J. Manuel Colmenar, Mauricio G.C. Resende. Two-phase GRASP for the Multi-Constraint Graph Partitioning problem, Computers & Operations Research, 2024, 106946, ISSN 0305-0548, https://doi.org/10.1016/j.cie.2024.110634.
description: The Multi-Constraint Graph Partitioning (MCGP) problem seeks a partition of the node set of a graph into a fixed number of clusters such that each cluster satisfies a collection of node-weight constraints and the total cost of the edges whose end nodes are in the same cluster is minimized. In this paper we propose a two-phase reactive GRASP heuristic to find near-optimal solutions to the MCGP problem. Our proposal is able to reach all the best known results for state-of-the-art instances, obtaining all the certified optimum values while spending only a fraction of the time in relation to the previous methods. To reach these results we have implemented an efficient computation method applied in the improvement phase. Besides, we have created a new set of larger instances for the MCGP problem and provided detailed results for future comparisons.
DOI: 10.6084/m9.figshare.c.3595619_d3.v1
title: Additional file 7: Table S2. of Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus

description: Gene-specific primers used for semi-qPCR and RT-qPCR. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.c.3595631_d2.v1
title: Additional file 6: of Cell-free DNA promoter hypermethylation in plasma as a diagnostic marker for pancreatic adenocarcinoma

description: Heat map of hypermethylated genes in each patient. (XLSX 38Â kb)
DOI: 10.6084/m9.figshare.c.3595619_d4.v1
title: Additional file 8: Table S3. of Genome-wide identification and expression analysis of the ClTCP transcription factors in Citrullus lanatus

description: Primers used for vector construction. (XLSX 30 kb)
DOI: 10.6084/m9.figshare.c.3595634_d2.v1
title: Additional file 1: of Brain activation in frontotemporal and Alzheimer’s dementia: a functional near-infrared spectroscopy study

description: Statistical source data for Fig. 2. Contrast of phonematic condition, semantic condition, and the control condition in the three groups; grey background signifies significant contrasts. AD Alzheimer’s dementia, bvFTD behavioral variant of frontotemporal dementia, CAT category (semantic) condition, HC healthy controls, LET letter (phonematic) condition, WD weekday (control) condition. (XLSX 13 kb)
DOI: 10.5519/qd.95dn3ewu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (253 records)
DOI: 10.6084/m9.figshare.c.3596576_d5.v1
title: Additional file 2 of Integrating multiple molecular sources into a clinical risk prediction signature by extracting complementary information

description: Microarray-based gene expression profiling (GEP) data. GEP data underlying the finding in this article. (Rdata 44977 kb)
DOI: 10.6084/m9.figshare.c.3596582_d6.v1
title: MOESM2 of Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation

description: Additional file 2: Table S2. Protein Identifications and Associated N-glycosites.
DOI: 10.6084/m9.figshare.c.3596603_d1.v1
title: Additional file 2: Table S2. of Transcription factors in microalgae: genome-wide prediction and comparative analysis

description: Sources for the self-build TF database. Table listing sources for the building of the self-build transcription factor database. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3596576_d6.v1
title: Additional file 1 of Integrating multiple molecular sources into a clinical risk prediction signature by extracting complementary information

description: Single nucleotide polymorphism (SNP) microarray data. SNP data underlying the finding in this article. (Rdata 50688 kb)
DOI: 10.6084/m9.figshare.c.3596603_d2.v1
title: Additional file 1: Table S1. of Transcription factors in microalgae: genome-wide prediction and comparative analysis

description: Source datasets. Table listing the reference of the genomic data used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3596582_d7.v1
title: MOESM7 of Mass spectrometry-based analyses showing the effects of secretor and blood group status on salivary N-glycosylation

description: Additional file 7: Table S2. PNGase F-Released N-Glycans Detected by MALDI Ion Mobility MS.
DOI: 10.6084/m9.figshare.c.3597515_d6.v1
title: Additional file 16: of The transcriptome of metamorphosing flatfish

description: In-house skin-specific database enriched with candidate genes involved in vertebrate skin development, morphogenesis and pigmentation. Protein name, Symbol, Accession number (no.), Organism and Biological role are shown. (XLSX 19 kb)
DOI: 10.15468/dl.n885cy
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-18 15,-18 16,-19 16,-19 15,-18 15))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 122 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037925-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597515_d7.v1
title: Additional file 4: of The transcriptome of metamorphosing flatfish

description: Annotation of the head transcriptome. Contig ID, transcript name, number of GOs and their description and enzymatic codes are shown for each contig. (XLSX 4280 mb)
DOI: 10.6084/m9.figshare.c.3597533_d1.v1
title: MOESM3 of Contemporary epidemiological overview of malaria in Madagascar: operational utility of reported routine case data for malaria control planning

description: Additional file 3. Tabulation of regions and districts by ecozone. Administrative regions and districts of Madagascar classified according to the newly designed ecozones.
DOI: 10.48331/scielo.mzedjq
title: Escritório de ética e boas práticas na comunicação de pesquisas SciELO Ética

description: Apresentação do Prof. Dr. Sigmar de Mello Rode na Reunião Anual SciELO 2024, realizada em 05/12/2024 em São Paulo, SP. Página do evento: https://eventos.scielo.org/reuniaoscielo2024/
DOI: 10.48331/scielo.mzedjq/b4dbdb
title: 4 - Grupo focal ética resumido SciELO Anual 2024.pptx

description: :unav
DOI: 10.6084/m9.figshare.c.3598418_d5.v1
title: Additional file 3: Table S3. of Range-wide genetic structure and demographic history in the bat ectoparasite Cimex adjunctus

description: Genotypic data at 9 microsatellite markers for 150 Cimex adjunctus individuals (we could not obtain microsatellite data for 10 individuals). The first three digits in each string describe the length (in base pairs) of the first allele, and the last three describe the length of the second allele. Missing data is identified with â  000000â  . (XLSX 59 kb)
DOI: 10.6084/m9.figshare.c.3598418_d6.v1
title: Additional file 4: Table S4. of Range-wide genetic structure and demographic history in the bat ectoparasite Cimex adjunctus

description: Host species and sampling year from which C. adjunctus samples assigned to each genetic cluster were collected. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3598448_d1.v1
title: Additional file 11 of Multicopy gene family evolution on primate Y chromosomes

description: Nine concatenated msrY-linked singleton genes maximum clade credibility tree. Summary of 95 % high posterior density interval information for tree shown in Fig. 1. (TREE 14.5 KB)
DOI: 10.6084/m9.figshare.c.3598448_d2.v1
title: Additional file 9 of Multicopy gene family evolution on primate Y chromosomes

description: TSPY 3 â ˛ half BEAST input file. Alignment, calibration nodes, nucleotide substitution model, and specification of priors for right tree shown in Additional file 1: Figure S6. (XML 54 kb)
DOI: 10.6084/m9.figshare.c.3599378_d3.v1
title: Additional file 3: Table S3. of DrugGenEx-Net: a novel computational platform for systems pharmacology and gene expression-based drug repurposing

description: Predicted systems pharmacology of ezetimibe. Targets predicted to directly associate with ezetimibe and their interacting protein partners (confidence score cutoff greater than 0.95) were used to infer pathways and molecular functions (FDR
DOI: 10.6084/m9.figshare.c.3599378_d4.v1
title: Additional file 4: Table S4. of DrugGenEx-Net: a novel computational platform for systems pharmacology and gene expression-based drug repurposing

description: Consensus drug rank list for Rheumatoid Arthritis. (XLS 47Â kb)
DOI: 10.6084/m9.figshare.c.3599378_d5.v1
title: Additional file 5: Table S5. of DrugGenEx-Net: a novel computational platform for systems pharmacology and gene expression-based drug repurposing

description: Consensus drug rank list for Inflammatory Bowel Disease. (XLS 51Â kb)
DOI: 10.6084/m9.figshare.c.3599408_d1.v1
title: Additional file 1: of A biomechanical, micro-computertomographic and histological analysis of the influence of diclofenac and prednisolone on fracture healing in vivo

description: μCT diclo, μCt pred, μCT control, biomech diclo, biomech pred, biomech control. Description of data: single values, mean and median. (XLSX 42 kb)
DOI: 10.6084/m9.figshare.c.3599378_d6.v1
title: Additional file 6: Table S6. of DrugGenEx-Net: a novel computational platform for systems pharmacology and gene expression-based drug repurposing

description: Top 50 predicted drugs and validations for Alzheimer’s Disease and Parkinson’s Disease. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3599939_d1.v1
title: Additional file 1: Table S1. of Gastrointestinal microbial populations can distinguish pediatric and adolescent Acute Lymphoblastic Leukemia (ALL) at the time of disease diagnosis

description: List of fecal samples collected for each patient over the period of enrollment for 16S rRNA gene sequencing and analysis. (XLSX 17Â kb)
DOI: 10.6084/m9.figshare.c.3599951_d2.v1
title: Additional file 2: Table S1. of Genome-wide association and identification of candidate genes for age at puberty in swine

description: Genomic regions, SNP results and candidate genes associated with age at puberty in pigs. (XLSX 37Â kb)
DOI: 10.6084/m9.figshare.c.3599945_d3.v1
title: Additional file 4: Table S1. of MM2S: personalized diagnosis of medulloblastoma patients and model systems

description: MB predictions for human patients of the GSE37418 dataset. The final subgroup prediction of MM2S, per sample, is indicated as ‘MM2S_prediction’. Sample predictions are colored by their predicted MB subgroup as follows: Group3 (yellow), SHH (red), WNT (blue), Group4 (green), and normal (grey). For each sample, the closest 5 human neighbors used to make a prediction are also indicated, with percentages indicating the abundance of each particular MB subgroup within the neighbors. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3600446_d10.v1
title: Additional file 9: File S1. of Transcriptomic analyses of the radiation response in head and neck squamous cell carcinoma subclones with different radiation sensitivity: time-course gene expression profiles and gene association networks

description: Reconstructed gene association networks. All obtained gene association networks are provided as R-objects of type igraph. (RDATA 32863Â kb)
DOI: 10.6084/m9.figshare.c.3600533_d2.v1
title: Additional file 3: of Molecular tools for studying the major malaria vector Anopheles funestus: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis

description: Validation of annotated exon-exon junctions. Table of exon-exon junctions annotated in gene set Afun1.2 and the mitochondrial genome that were, or were not, validated by RNAseq data generated in this study. Introns validated at both ends (labelled 5′_and_3′) or at only one end (labelled 5′_only or 3′_only) are indicated. (XLSX 1949 kb)
DOI: 10.6084/m9.figshare.c.3600533_d3.v1
title: Additional file 6: of Molecular tools for studying the major malaria vector Anopheles funestus: improving the utility of the genome using a comparative poly(A) and Ribo-Zero RNAseq analysis

description: Scaffold assignment to chromosome arms. Table of Anopheles funestus scaffolds assigned to chromosome arms. Assignment is based on the possession of at least 5 putative 1:1 orthologues with Anopheles gambiae occurring on the same chromosome arm. Orthology was inferred by clustering predicted protein sequences at 75Â % amino acid identity. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3600998_d1.v1
title: Additional file 4: Table S4. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: Differential expression in miRNAs between life stages. Fold changes and p-values of the 10 pairwise comparisons between samples. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.c.3600998_d2.v1
title: Additional file 1: Table S1. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: Full Rfam classification of sequenced small RNAs. All sequenced small RNAs were classified into RNA types according to the Rfam database. Diversity refers to the number of unique reads that fell into one of the RNA types. Frequency refers to number of different families found within each type. Abundance refers to the total number of reads found within each RNA type (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3600998_d3.v1
title: Additional file 3: Table S3. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: Potential targets for the identified miRNAs. Annotated with Drosophila orthologs. (XLSX 321 kb)
DOI: 10.6084/m9.figshare.c.3601016_d1.v1
title: Additional file 7:Â Table S6. of VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

description: Vcf file produced from the exome sequencing of the Arthrogryposis Multiplex Congenita clinical case described in the results section. (GZ 1665Â kb)
DOI: 10.6084/m9.figshare.c.3601019_d1.v1
title: Additional file 3: Table S2. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: Predicted secretome of Ramularia collo-cygni. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3600998_d4.v1
title: Additional file 2: Table S2. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: 75 miRNAs with strong evidence of being known miRNAs in other species (XLSX 37 kb)
DOI: 10.6084/m9.figshare.c.3601019_d2.v1
title: Additional file 13: Table S10. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: RT-PCR primer details. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3600998_d5.v1
title: Additional file 5: Table S5. of MicroRNAs in the oriental fruit fly, Bactrocera dorsalis: extending Drosophilid miRNA conservation to the Tephritidae

description: Spearman's coefficients (Ď ) and p-values for the correlation between expression values of D. melanogaster and B. dorsalis orthologous miRNAs across life stages. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3601016_d2.v1
title: Additional file 4:Â Table S3. of VarElect: the phenotype-based variation prioritizer of the GeneCards Suite

description: Vcf file produced from the exome sequencing of the Congenital Diarrhea clinical case described in the results section. (GZ 14654Â kb)
DOI: 10.6084/m9.figshare.c.3601019_d3.v1
title: Additional file 10: Table S8. of The genome of the emerging barley pathogen Ramularia collo-cygni

description: BLASTp top hits for putative metabolic cluster genes on Contig17. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3601022_d2.v1
title: Additional file 3 of Do little interactions get lost in dark random forests?

description: Simulation code. Replication material for all simulation studies. (ZIP 44 kb)
DOI: 10.15468/dl.exdkyj
title: Occurrence Download

description: A dataset containing 701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Pandion haliaetus carolinensis (Gmelin, 1788)"
 ]
}

 The dataset includes 701 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037927-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhvmrn
title: Occurrence Download

description: A dataset containing 13897 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Parkesia motacilla (Vieillot, 1809)"
 ]
}

 The dataset includes 13897 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037926-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3601502_d5.v1
title: Additional file 5: of IRES-dependent translated genes in fungi: computational prediction, phylogenetic conservation and functional association

description: List of non-redundant organisms in the analysis. Non-redundant genomes were selected based on their position in a maximum likelihood phylogenetic tree that was constructed using the PHANGORN package [113] available in the R software ( http://www.r-project.org ) [114]. (XLS 21 kb)
DOI: 10.6084/m9.figshare.c.3601529_d1.v1
title: Additional file 3: of Effect of microbial cell preparation on renal profile and liver function among type 2 diabetics: a randomized controlled trial

description: Changes in Dietary intake and physical activity level at baseline, week 6 and week 12. (XLSX 11Â kb)
DOI: 10.6084/m9.figshare.c.3601532_d1.v1
title: Additional file 5: of Integrating network, sequence and functional features using machine learning approaches towards identification of novel Alzheimer genes

description: Input datasets (train and test) and the generated models which can be used to reproduce the results presented in the current study.