cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.q83bk3jkt
title: Linking variation in planktonic primary production to coral reef fish growth and condition

description: Within low nutrient tropical oceans, islands and atolls with higher
 primary production support higher reef fish biomass and reef organism
 abundance. External energy subsidies can be delivered onto reefs via a
 range of physical mechanisms. However, the influence of spatial variation
 in primary production on reef fish growth and condition is largely
 unknown. It is not yet clear how variability in food delivery onto a reef
 interacts with reef depth and slope, and affects reef fish
 productivity. Here we test the hypothesis that with increased
 proximity to deep-water oceanic allochthonous nutrient sources, or at
 sites where transportation of these water bodies onto reefs is facilitated
 by shallower reef slopes, parameters of fish growth and condition will be
 higher, and this pattern will be further emphasised in areas naturally
 higher in primary production. Contrary to expectations, we found no
 association between fish growth rate and sites with higher mean
 chlorophyll values. There were no differences in δ15N
 or δ13C values in fish collected at greater depths across reefs,
 suggesting a homogeneous primary production resource. However, the
 relationship between fish condition and primary production was influenced
 by depth of collection, driven by higher fish condition at shallow depths
 within a study site which is a ‘hotspot’ of primary production.
 Carbon δ13C values were depleted at sites with increasing primary
 production, and this trend was reversed by an interactive effect with
 shallower reef slopes. Our results indicate that deep-water ocean
 nutrient influences did not translate into observable increases
 in overall population growth in planktivorous Chromis
 fieldi within the 10–17.5 m depth range, but
 show the importance of site specific variation in hydrodynamics and reef
 physical characteristics influencing fish carbon isotopic composition and
 condition.
DOI: 10.5061/dryad.1vhhmgqw2
title: HLA class I and class II allelic profile of healthy Lebanese population

description: Background. This study examined the origin of present-day Lebanese using
 high-resolution HLA class I and class II allele and haplotype
 distributions. The study subjects comprised 152 unrelated individuals, and
 their HLA class I and class II alleles and two-locus and five-locus
 haplotypes were compared with those of neighboring and distant communities
 using genetic distances, neighbor-joining dendrograms, correspondence, and
 haplotype analyses. HLA class I (A, B, C) and class II (DRB1, DQB1) were
 genotyped at a high-resolution level by PCR-SSP. Results. In total, 76
 alleles across the five HLA loci were detected: A*03:01 (17.1%), A*24:02
 (16.5%), B*35:01 (25.7%), C*04:01 (25.3%), and C*07:01 (20.7%) were the
 most frequent class I alleles, while DRB1*11:01 (34.2%) and DQB1*03:01
 (43.8%) were the most frequent class II alleles. All pairs of HLA loci
 were in significant linkage disequilibrium. The most frequent two-locus
 haplotypes recorded were DRB1*11:01~DQB1*03:01 (30.9%), B*35:01-C*04:01
 (20.7%), B*35:01~DRB1*11:01 (13.8%), and A*24:02~B*35:01 (10.3%). Lebanese
 appear to be closely related to East Mediterranean communities such as
 Levantines (Palestinians, Syrians, and Jordanians), Turks, Macedonians,
 and Albanians. However, Lebanese appear to be distinct from North African,
 Iberian, and Sub-Saharan communities. Conclusions. Collectively, this
 indicates a limited genetic contribution of Arabic-speaking populations
 (from North Africa or the Arabian Peninsula) and Sub-Saharan communities
 to the present-day Lebanese gene pool. This confirms the notion that
 Lebanese population are of mixed East Mediterranean and Asian origin, with
 a marked European component.
description: The study subjects comprised 152 unrelated healthy Lebanese
 individuals of both sexes (90
 males and 62 females), who were randomly collected from the five provinces and the six major religious
 groups of Lebanon. These comprised hospital and university staff, blood
 donors, and volunteers from the community. None of the study participants
 suffered from any acute or chronic disease, including neurologic, cardiac,
 or metabolic diseases, and were not on any medication at the time of
 specimen collection. The individuals were subjected to HLA
 class I and class II high-resolution genotyping and phylogenetic
 calculations. Low-resolution HLA-A, HLA-B, HLA-C, HLA-DRB1, and DQB1
 typing was performed using generic polymerase chain reaction with
 sequence-specific primers (PCR-SSP) kits (One Lambda, Thousand Oaks, CA),
 while high-resolution typing was performed by PCR-SSP using SSP1L (class
 I) and SSP2L (class II) HLA genotyping kits according to the
 manufacturer’s specifications (Luminex–One Lambda, Canoga Park,
 CA).
description: The dataset contains HLA class I and class II profile of healthy
 (non-diseased) population.
DOI: 10.5061/dryad.qjq2bvqjc
title: Data from: Is there a benefit for anesthesiologists of adding difficult airway scenarios for learning fiberoptic intubation skills using virtual reality training? A randomized controlled study

description: Introduction: Fiberoptic intubation for a difficult airway requires
 significant experience. Traditionally only normal airways were available
 for high fidelity bronchoscopy simulators. It is not clear if training on
 difficult airways offers an advantage over training on normal airways.
 This study investigates the added value of difficult airway scenarios
 during virtual reality fiberoptic intubation training. Methods: A
 prospective multicentric randomized study was conducted 2019 to 2020,
 among 86 inexperienced anesthesia residents, fellows and staff. Two groups
 were compared: Group N (control, n=43) first trained on a normal airway
 and Group D (n=43) first trained on a normal, followed by three difficult
 airways. All were then tested by comparing their Global Rating Scores
 (GRS) on 5 scenarios (1 normal and 4 difficult airways).
 Results: The final evaluation GRS score for the normal airway
 testing scenario was significantly higher for group N than group D: median
 score 76% (IQR 56.5 - 90) versus 58% (IQR 51.5 - 69, p = 0.0039),
 but there was no difference in GRS scores for the difficult intubation
 testing scenarios.  Conclusions: A single exposure to
 each of 3 different difficult airway scenarios did not lead to better
 fiberoptic intubation skills on previously unseen difficult airways, when
 compared to multiple exposures to a normal airway scenario. This finding
 may be due to the learning curve of approximately 5-10 exposures to a
 specific airway scenario required to reach proficiency. 
description: Please see README file.
description: Please see README file.
DOI: 10.5061/dryad.rfj6q57d4
title: Data from: In vitro cytotoxic, antioxidant, hemolytic and cytoprotective potential of promising ethacrynic acid derivatives

description: Female breast cancer is one of the leading causes of death among patients
 with cancer and requires a proactive strategy for a cure. Triple-negative
 breast cancer (TNBC) is the most aggressive cancer with a high risk of
 developing metastases. The purpose of the present study was to screen the
 pharmacological activities of three promising ethacrynic acid (EA)
 derivatives containing a piperazine moiety (P3, P4, and P5). The EA
 derivatives were tested against MDA-MB-468 cancer cell line as a model for
 TNBC and MCF7 cancer cell line as a model subtype of luminal breast cancer
 using the methyl tetrazolium test (MTT). Additionally, the modulation of
 the glutathione and thioredoxin systems, as well as the antioxidant and
 cytoprotective potential of each compound, were investigated. Moreover,
 initial in vitro safety screening was conducted using human blood cells.
 As a result, EA derivatives showed clear dose-dependent antiproliferative
 activity with high selectivity to cancer cells by orchestrating oxidative
 stress. Derivative P3 has the most promising potential for further
 preclinical investigation, owing to its safety profile and significant
 cytoprotective and antitumor properties.
DOI: 10.5061/dryad.vdncjsxxf
title: Supplementary material: Does functional redundancy determine the ecological severity of a mass extinction event?

description: Many authors have noted the apparent “decoupling” of the taxonomic and
 ecological severity of mass extinction events, with no widely accepted
 mechanistic explanation for this pattern having been offered. Here we test
 between two key factors that potentially influence ecological severity:
 biosphere entropy (a measure of functional redundancy), and the degree of
 functional selectivity (in terms of deviation from a pattern of random
 extinction with respect to functional entities). While theoretical
 simulations suggest that the Shannon entropy of a given community prior to
 an extinction event determines the expected outcome following a
 perturbation of a given magnitude, actual variation in Shannon entropy
 between major extinction intervals is insufficient to explain the observed
 variation in ecological severity. Within this information-theoretic
 framework, we show that it is the degree of functional selectivity which
 is expected to primarily determine the ecological impact of a given
 perturbation when levels of functional redundancy are not substantially
 different.
description: Raw data was downloaded from the Paleobiology Database and
 filtered according to the method described in the core manuscript. All
 remaining material (e.g., <em>R </em>code) was written by
 Daniel G. Dick.
description: See included document "LIST OF SUPPLEMENTARY
 MATERIAL.docx" for a complete list of files and what is included in
 each.
DOI: 10.5061/dryad.3ffbg79m7
title: Data: Drought and fire determine juvenile and adult woody diversity and dominance in a semi-arid African savanna

description: Aim: To understand how communities of adult and juvenile (seedlings and
 saplings) woody plants were impacted by fire and the 2014 – 2016 El Niño
 drought in Kruger National Park, South Africa. Methods: We used a
 landscape scale fire experiment spanning 2013-2019 in a semi-arid savanna
 in the central west of Kruger National Park (mean annual precipitation,
 543 mm). Adult and juvenile woody species composition were recorded during
 and after the drought in 40 plots that experienced a mix of no fire,
 moderate fire and frequent fire treatments. Using multivariate modelling,
 we related community composition in juvenile and adult woody plants to
 year of sampling and the experimental fire treatments. Results:
 Post-drought, there was significant adult woody plant top-kill, especially
 in dominant species Dichrostachys cinerea (81% reduction in abundance),
 Acacia nigrescens (30%), and Combretum apiculatum (19%), but no
 significant change in adult species richness. Two years post-drought,
 abundance of all juveniles decreased by 35%, and species richness
 increased in juveniles in both the frequent fire (7%) and no fire
 treatments (32%). Conclusion: Counter-intuitively, the El Niño drought
 increased species richness of the woody plant community due to the
 recruitment of new species as juveniles, a potential lasting impact on
 diversity, and where different fire regimes were associated with
 differences in community composition. Drought events in semi-arid savannas
 could drive temporal dynamics in species richness and composition in
 previously unrecognised ways.
DOI: 10.5061/dryad.6q573n61d
title: Data from: Lineage-specific trait variations and plasticity of obligate parthenogenetic animals following the expansion of distribution range to a continental archipelago.

description: Two asexual lineages, JPN1 and JPN2, of panarctic Daphnia pulex expanded
 the distribution range to Japan from North America, independent of each
 other. According to the mutation rates within these lineages, JPN1 lineage
 colonized Japan earlier than JPN2 lineage. Moreover, the ratio of
 nonsynonymous to synonymous mutation rates (dN/dS) was lower in JPN1 than
 in JPN2 lineage. Accordingly, it is hypothesized that variations of
 phenotypic traits differ between these two lineages. In addition, since
 they are obligate parthenogenetic animals, the lineage occupying a larger
 distribution range should have a larger phenotypic plasticity. To test
 these hypotheses, we experimentally examined the phenotypic variations of
 fitness-related traits, including digestive, life history and
 morphological traits, among several genotypes of these lineages. We found
 that within-lineage variations of most traits were smaller in JPN1 than in
 JPN2. In addition, the overall phenotypic variations were also smaller
 within the JPN1 lineage than within the JPN2 lineage. These results
 support the idea that the JPN1 lineage has been more efficiently subjected
 to negative selection, as expected from the lower dN/dS ratio. However,
 the magnitude of the phenotypic plasticity to changing food levels was at
 the same level for both the JPN1 and JPN2 lineages, while variations found
 in the phenotypic plasticity were smaller in the JPN1 lineage. The
 difference in the variations of the phenotypic traits and plasticity
 between the two lineages suggests that these two lineages have evolved
 under somewhat different environmental conditions and that genotypes of
 the JPN2 lineage may have exploited niches that differed somewhat from
 that of the JPN1 genotypes.
description: Detailed methods are described in the paper.
description: Data set used for all figures and tables in the paper.
DOI: 10.17863/cam.122719
title: Dataset supporting "Solar Lignin Reforming with Tunable Selectivity Using a Hybrid Photocatalyst in Aqueous Solution"

description: The valorization of lignin provides an important means to access sustainable base chemicals, but current approaches are hampered by the lack of selective and scalable systems in aqueous solution. Here, we report a ZnIn2S4 (ZIS)-based photocatalytic system that directs photogenerated electrons to cocatalysts to control product selectivity using concentrated solar irradiation. By introducing a phosphonated molecular Ni co-catalyst for hydrogen evolution (NiP), the conversion of the lignin model compound 2-phenoxy-1-phenylethanol shifts from phenol and acetophenone on bare ZIS to H2 and 2-phenoxy-1-phenylethanone on the ZIS|NiP system (5 sun). The latter achieves a turnover number (TONH2) of up to 120 molH2 molNiP–1. Integration of a phosphonated Ni bis(terpyridine) co-catalysts (NitpyP) in a CO2-saturated aqueous solution redirects photo-generated electrons toward syngas (H2/CO) production (TONsyngas = 48), whereas immobilization of formate dehydrogenase (FDH) produces formate (TONformate = 2200). The hybrid photocatalyst could also convert polymeric lignin, albeit with lower activity (e.g., TONH2 of 18 for organosolv lignin). Two days of outdoor testing under real sunlight confirms the system's robustness under fluctuating environmental conditions, with solar heating (to ~60 °C) enhancing performance and selectivity. Our findings establish photocatalyst tuning as a strategy to control product selectivity in solar lignin reforming, which can be more widely applied in other photocatalytic reactions in the future. Manuscript - contains Scheme 1 and Figure 1–5: schematics, STEM, EDX, UV−vis, UPS, Tauc plot, Mott−Schottky, yields, and photo (as JPEG, TIF, XLSX files) Supporting Information (SI) - contains Figure S1–S24: SEM, XPS, STEM, EDX, XRD, yields, thermal images, UV−vis, 1H NMR spectra, LC-MS, chronoamperometry, Nyquist plots, and QCM (as TIF, JPG, XLSX, ZIP files) For more details about the experimental procedure, instrumentation, and data collection, see the manuscript and also the readme txt file.
DOI: 10.5061/dryad.b5mkkwhg2
title: Online electronic material for: Macroevolutionary dynamics of climatic niche space

description: How and why lineages evolve along niche space as they diversify and adapt
 to different environments is fundamental to evolution. Progress has been
 hampered by the difficulties of linking a robust empirical
 characterization of species niches with flexible evolutionary models that
 describe their evolution. Consequently, the relative influence of abiotic
 and biotic factors remains poorly understood. Here we characterize
 species’ two-dimensional temperature and precipitation niche space
 occupied (i.e., species niche envelope) as complex geometries and assess
 their evolution across all Aves using a model that captures heterogeneous
 evolutionary rates on time-calibrated phylogenies. We find that extant
 birds coevolved from warm, mesic climatic niches into colder and drier
 environments and responded to the K-Pg boundary with a dramatic increase
 in disparity. Contrary to expectations of subsiding rates of niche
 evolution, our results show that overall rates have increased steadily,
 with some lineages experiencing exceptionally high evolutionary rates,
 associated with colonization of novel niche spaces, and others showing
 niche stasis. Both competition- and environmental change-driven niche
 evolution transpire and result in highly heterogeneous rates near the
 present. Our findings highlight the growing ecological and conservation
 insights arising from model-based integration of comprehensive
 environmental and phylogenetic information.
description: Climatic information was derived using publicly available global
 climatic data sets and processed using R to create polygons representing
 the climatic niche of all species of birds. This was used then as input to
 a BEAST analysis of 2D Relaxed Random Walk.
description: The Online Electronic Material
 includes the following files:  
 <strong>source_datasets.txt</strong>: text data describing all the publicly available datasets used to reconstruct species climatic niche envelopes used. <strong>extract_climatic_niches.r</strong>: R code used to extract bird climatic information and create their climatic niche envelopes. <strong>Beast_run.xml</strong>: xml file use to run the analysis of climatic niche evolution. <strong>MCCtree.tre</strong>: Maximum Clade Credibility tree holding the posterior information for the climatic niche evolution analysis, including per branch median and posterior Highest Posterior Density intervals for temperature, precipitation and rates of evolution.
DOI: 10.17863/cam.124699
title: Research Data supporting "Modulating non-radiative recombination related to shallow traps in halide perovskites"

description: All data were collected using in-lab instruments and analyzed by the authors. Details of the measurement and analysis methods are provided in the Experimental Section of the manuscript. A 7-Zip archive containing the source data for all figures is provided, including: (i) the numerical datasets in .xlsx format; (ii) Origin files (.oggu) that can be opened in Origin; and (iii) the figure illustrations assembled in a PowerPoint (.ppt/.pptx) file. A README file in the archive provides step-by-step instructions for opening each file type and explains how the files map to the corresponding figures/panels (by figure name). For the .xlsx datasets, the first column contains the X values and subsequent column(s) contain the corresponding Y values; the correct dataset can be readily identified by matching the file/figure names and by directly comparing the reproduced plots with the published figures (the datasets are distinct and unambiguous). The provided files can be used to reproduce the figures and analysis results using Excel, Python, Origin, or other plotting/processing software.
DOI: 10.5061/dryad.9ghx3ffkj
title: Sacred groves of Central India: Diversity status, carbon storage and conservation strategies

description: Sacred groves (SGs) play an important role in the conservation of local
 biodiversity and provide numerous ecosystem services worldwide. We studied
 how the ecological status of Central Indian SGs contributes to regional
 tree diversity and carbon (C) storage. We inventoried the trees in
 fifty-nine SGs of Madhya Pradesh and recorded a total of 109 tree species
 (90 genera, 40 families). The most species-rich families were Fabaceae,
 Combretaceae, Malvaceae and Moraceae. The tree density ranged from 75 to
 925 individuals ha-1 (mean: 398 ± 32 individuals ha-1), while the basal
 area varied from 2.5 to 69.2 m2 ha-1 (mean: 24.2 ± 1.9 m2 ha-1). The total
 C stock {tree C + soil organic C (SOC; 0-30 cm)} ranged from 44.7 to 455.4
 Mg C ha-1 (mean: 153.8 ± 9.6 Mg C ha-1) across the SGs. The studied SGs
 represented 74.7% of the total tree diversity and contained 33.1% higher
 total C stock than the forests of the state. Tree C stock was
 significantly positively correlated with tree basal area (r57 = 0.965, P
 &lt; 0.0001), distance from the nearest village (r57 = 0.432, P
 &lt; 0.001) and number of years of existence (r57 = 0.615, P &lt;
 0.0001). The present study highlighted the crucial role of the studied SGs
 in sustaining regional biodiversity and storing significant amounts of C
 in biomass and soil. Continued conservation efforts and contained
 anthropogenic interferences are necessary in order to maintain the current
 role of these SGs as biodiversity and carbon reservoirs of Central India.
DOI: 10.57707/fmi-b2share.zb9xr-mkm04
title: Data  for "High-resolution soil moisture mapping in northern boreal forests using SMAP data and downscaling techniques" by Jääskeläinen et al.

description: Datasets associated with Jääskeläinen et al. manuscript titled: "High-resolution soil moisture mapping in northern boreal forests using SMAP data and downscaling techniques". The dataset includes training, test, and validation sets for machine learning model development. Additionally, there are also predicted soil moisture maps in 1 km and 250 m spatial resolutions for Northern Finland covering the years 2019-2023 (from May 1 to October 15).
DOI: 10.5061/dryad.7d7wm37xn
title: Data from: Previous inter-sexual aggression increases female mating propensity in fruit flies

description: Female mate choice is a complex decision making process that involves many
 context-dependent factors. Understanding the factors that shape variation
 in female mate choice has important consequences for evolution via sexual
 selection. In many animals including fruit flies, Drosophila melanogaster,
 males often use aggressive mating strategies to coerce females into
 mating, but it is not clear if females’ experience with sexual aggression
 shapes their future behaviors. Here, we used males derived from lineages
 that were artificially selected to display either low or high sexual
 aggression toward females to determine how experience with these males
 shapes subsequent female mate choice. First, we verified that males from
 these lineages differed in their sexual behaviors. We found that males
 from high sexual aggression backgrounds spent more time pursuing virgin
 females, and had a shorter mating latency but shorter copulation duration
 compared to males from low sexual aggression backgrounds. Next, we tested
 how either a harassment by or mating experience with males from either a
 high or low sexual aggression backgrounds influenced subsequent female
 mate choice behaviors. We found that in both scenarios, females that
 interacted with high sexual aggression males were more likely and faster
 to mate with a novel male one day later, regardless of the male’s
 aggression level. These results have important implications for
 understanding the evolution of flexible polyandry as a mechanism that
 benefits females.