cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11359547.v1
title: Buxus balearica chorology

description: Distribution map of Balearic box (<i>Buxus balearica</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn").<br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com).<br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007<br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.6084/m9.figshare.11359535
title: Metadata record for: Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts

description: This dataset contains key characteristics about the data described in the Data Descriptor Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:<br>Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11359499
title: RSOS-Supplementary Data from Optimization and blends study of heterogeneous acid catalyst-assisted esterification of palm oil industry by-product for biodiesel production

description: FAME blend TGA
DOI: 10.6084/m9.figshare.11359535.v2
title: Metadata record for: Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts

description: This dataset contains key characteristics about the data described in the Data Descriptor Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:<br>Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11359496
title: RSOS-Supplementary Data from Optimization and blends study of heterogeneous acid catalyst-assisted esterification of palm oil industry by-product for biodiesel production

description: FAME FT-IR Main
DOI: 10.6084/m9.figshare.11359499.v1
title: RSOS-Supplementary Data from Optimization and blends study of heterogeneous acid catalyst-assisted esterification of palm oil industry by-product for biodiesel production

description: FAME blend TGA
DOI: 10.6084/m9.figshare.11359535.v1
title: Metadata record for: Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts

description: This dataset contains key characteristics about the data described in the Data Descriptor Reference tool kinematics-kinetics and tissue surface strain data during fundamental surgical acts. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br>
DOI: 10.6084/m9.figshare.11359496.v1
title: RSOS-Supplementary Data from Optimization and blends study of heterogeneous acid catalyst-assisted esterification of palm oil industry by-product for biodiesel production

description: FAME FT-IR Main
DOI: 10.6084/m9.figshare.11359490
title: Generalized Computer Model Calibration for Radiation Transport Simulation

description: Model calibration uses outputs from a simulator and field data to build a predictive model for the physical system and to estimate unknown inputs. The conventional approach to model calibration assumes that the observations are continuous outcomes. In many applications this is not the case. The methodology proposed was motivated by an application in modeling photon counts at the Center for Exascale Radiation Transport. There, high performance computing is used for simulating the flow of neutrons through various materials. In this article, new Bayesian methodology for computer model calibration to handle the count structure of our observed data allows closer fidelity to the experimental system and provides flexibility for identifying different forms of model discrepancy between the simulator and experiment. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.11359490.v1
title: Generalized Computer Model Calibration for Radiation Transport Simulation

description: Model calibration uses outputs from a simulator and field data to build a predictive model for the physical system and to estimate unknown inputs. The conventional approach to model calibration assumes that the observations are continuous outcomes. In many applications this is not the case. The methodology proposed was motivated by an application in modeling photon counts at the Center for Exascale Radiation Transport. There, high performance computing is used for simulating the flow of neutrons through various materials. In this article, new Bayesian methodology for computer model calibration to handle the count structure of our observed data allows closer fidelity to the experimental system and provides flexibility for identifying different forms of model discrepancy between the simulator and experiment. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.11359193
title: Incident colorectal cancer in Lynch syndrome is usually not preceded by compromised quality of colonoscopy

description: <b>Background:</b> Lifetime incidence of colorectal cancer (CRC) especially in carriers of <i>MLH1</i> and <i>MSH2</i> pathogenic germline variants in mismatch repair genes is high despite ongoing colonoscopy surveillance. Lynch syndrome (LS) registries have been criticized for not reporting colonoscopy quality adequately. <b>Methods:</b> Prospective follow-up data from the national registry were combined with a retrospective assessment of the colonoscopy reports from Helsinki University Hospital electronic patients records in 2004–2019. <b>Results:</b> Total of 366 <i>MLH1, MSH2</i> and <i>MSH6</i> carriers underwent 1564 colorectal endoscopies (mean 4.3 per patient, range 1–10) at a single unit. At least one subsequent examination was performed on 336 patients. Bowel preparation was suboptimal (Boston Bowel Preparation Scale 0–2) on either right or left side of the colon in 12.9% of planned surveillance examinations. Caecal intubation rate for full-length colonoscopies was 98.9%. Adenoma detection rate (ADR) was 15.8% in 2004–2014 but substantially increased (21.9%) after introduction of high-definition (HD) technology in 2015–2019 (<i>p</i> = .004; 18.7% across all examinations). CRCs were detected in 23 cases. Nineteen cancers were detected after 977 optimal quality colonoscopies and 4 after 151 compromised quality (BBPS &lt;3 or non-complete examination; <i>p</i> = .16). Advanced neoplasias were not more frequently reported after compromised quality examinations. <b>Conclusion:</b> The majority of LS-associated incident CRCs were detected after colonoscopies with proper bowel preparation and complete examination. There is a considerable time trend towards higher ADR after introducing HD technology of endoscopes. The effect of time trend in ADR to CRC incidence in LS needs to be studied in larger, prospective settings.
DOI: 10.6084/m9.figshare.11359136
title: The β-glucosidase gene sequence was obtained from the T.licuslicus transcriptome

description: <pre>The β-glucosidase gene sequence obtained from the T.licuslicus transcriptome, previously analyzed by the Embrapa Genetic Resources and Biotechnology Bioinformatics Laboratory, in partnership with Eurofins MWG Operon.</pre>
DOI: 10.6084/m9.figshare.11359193.v1
title: Incident colorectal cancer in Lynch syndrome is usually not preceded by compromised quality of colonoscopy

description: <b>Background:</b> Lifetime incidence of colorectal cancer (CRC) especially in carriers of <i>MLH1</i> and <i>MSH2</i> pathogenic germline variants in mismatch repair genes is high despite ongoing colonoscopy surveillance. Lynch syndrome (LS) registries have been criticized for not reporting colonoscopy quality adequately. <b>Methods:</b> Prospective follow-up data from the national registry were combined with a retrospective assessment of the colonoscopy reports from Helsinki University Hospital electronic patients records in 2004–2019. <b>Results:</b> Total of 366 <i>MLH1, MSH2</i> and <i>MSH6</i> carriers underwent 1564 colorectal endoscopies (mean 4.3 per patient, range 1–10) at a single unit. At least one subsequent examination was performed on 336 patients. Bowel preparation was suboptimal (Boston Bowel Preparation Scale 0–2) on either right or left side of the colon in 12.9% of planned surveillance examinations. Caecal intubation rate for full-length colonoscopies was 98.9%. Adenoma detection rate (ADR) was 15.8% in 2004–2014 but substantially increased (21.9%) after introduction of high-definition (HD) technology in 2015–2019 (<i>p</i> = .004; 18.7% across all examinations). CRCs were detected in 23 cases. Nineteen cancers were detected after 977 optimal quality colonoscopies and 4 after 151 compromised quality (BBPS &lt;3 or non-complete examination; <i>p</i> = .16). Advanced neoplasias were not more frequently reported after compromised quality examinations. <b>Conclusion:</b> The majority of LS-associated incident CRCs were detected after colonoscopies with proper bowel preparation and complete examination. There is a considerable time trend towards higher ADR after introducing HD technology of endoscopes. The effect of time trend in ADR to CRC incidence in LS needs to be studied in larger, prospective settings.
DOI: 10.6084/m9.figshare.11359136.v1
title: The β-glucosidase gene sequence was obtained from the T.licuslicus transcriptome

description: <pre>The β-glucosidase gene sequence obtained from the T.licuslicus transcriptome, previously analyzed by the Embrapa Genetic Resources and Biotechnology Bioinformatics Laboratory, in partnership with Eurofins MWG Operon.</pre>
DOI: 10.6084/m9.figshare.11359127
title: Measurement of cardiovascular metrics in a compliant vessel model using low-field nuclear magnetic resonance: DATA

description: The data presented is obtained from low-field NMR measurements of artificial small diameter vessels using the Terranova device.<br>
DOI: 10.6084/m9.figshare.11359124
title: Wellcome funded articles -- publisher breakdown (2017)

description: A breakdown, by publisher, of where Wellcome authors published in 2017.<br>List of articles identified at: https://europepmc.org/search?query=(GRANT_AGENCY:"Wellcome Trust") AND (FIRST_PDATE:[2017-01-01 TO 2017-12-31])&page=1
DOI: 10.6084/m9.figshare.11359127.v1
title: Measurement of cardiovascular metrics in a compliant vessel model using low-field nuclear magnetic resonance: DATA

description: The data presented is obtained from low-field NMR measurements of artificial small diameter vessels using the Terranova device.<br>
DOI: 10.6084/m9.figshare.11359124.v1
title: Wellcome funded articles -- publisher breakdown (2017)

description: A breakdown, by publisher, of where Wellcome authors published in 2017.<br>List of articles identified at: https://europepmc.org/search?query=(GRANT_AGENCY:"Wellcome Trust") AND (FIRST_PDATE:[2017-01-01 TO 2017-12-31])&page=1
DOI: 10.6084/m9.figshare.11358944
title: Character-taxon matrix in NEXUS file format from <i>Asmodochelys parhami</i>, a new fossil marine turtle from the Campanian Demopolis Chalk and the stratigraphic congruence of competing marine turtle phylogenies

description: Character-taxon matrix used in both the parsimony and Bayesian analyses.
DOI: 10.6084/m9.figshare.11358944.v1
title: Character-taxon matrix in NEXUS file format from <i>Asmodochelys parhami</i>, a new fossil marine turtle from the Campanian Demopolis Chalk and the stratigraphic congruence of competing marine turtle phylogenies

description: Character-taxon matrix used in both the parsimony and Bayesian analyses.
DOI: 10.6084/m9.figshare.11358929
title: Metadata record for: Depth-to-bedrock map of China at a spatial resolution of 100 meters

description: This dataset contains key characteristics about the data described in the Data Descriptor Depth-to-bedrock map of China at a spatial resolution of 100 meters. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11358929.v1
title: Metadata record for: Depth-to-bedrock map of China at a spatial resolution of 100 meters

description: This dataset contains key characteristics about the data described in the Data Descriptor Depth-to-bedrock map of China at a spatial resolution of 100 meters. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.11358653
title: Roary (default settings): gene presence and absence per GPSC

description: A zip file containing the gene presence and absence per GPSC in csv file, together with per GPSC metadata and GPSC reference sequence
DOI: 10.6084/m9.figshare.11358653.v2
title: Roary (default settings): gene presence and absence per GPSC

description: A zip file containing the gene presence and absence per GPSC in csv file, together with per GPSC metadata and GPSC reference sequence
DOI: 10.6084/m9.figshare.11358653.v1
title: Roary: gene presence and absence per GPSC

description: A zip file containing the gene presence and absence per GPSC in csv file, together with per GPSC metadata and GPSC reference sequence
DOI: 10.6084/m9.figshare.11358584
title: Supplementary Material for: Triple Covered Metal Stent Deployment Using Side-by-Side Technique for Hemobilia due to Hepatocellular Carcinoma (with Video)

description: A hepatocellular carcinoma (HCC) rarely expands into the biliary tract. In this situation, because of its hypervascular nature, cholangitis or hemobilia may sometimes occur. Surgery is one of the options in this situation. However, patients with HCC and bile duct invasion are sometimes in a poor general condition, as in the case presented in this report. For such patients, surgical treatment may need to be invasive. Thus, here we report technical tips for triple covered metal stent deployment using side-by-side technique for hemobilia due to HCC. After guidewire deployments at the left, anterior, and posterior bile ducts, 6-mm covered self-expandable metal stents were placed at each bile duct. This may be useful for high-grade hepatic hilar obstruction due to HCC because drainage and hemostasis effects are obtained.
DOI: 10.6084/m9.figshare.11358578
title: Dataset for: QSAR-based estimation of SSD parameters – an exploratory investigation

description: Ecological risk assessments are hampered by limited availability of ecotoxicity data. The present study aimed to explore the possibility of deriving SSD (species sensitivity distribution) parameters for non-tested compounds, based on simple physicochemical characteristics, known SSDs for data-rich compounds and a QSAR-type approach. The median toxicity of a data-poor chemical for species assemblages significantly varies with values of the physicochemical descriptors, especially when based on high quality SSD data (either from acute EC50s or chronic NOECs). Beyond exploratory uses, we discussed how the precision of QSAR-based SSDs can be improved to construct models that accurately predict the SSD-parameters of data poor chemicals. The current models show that the concept of QSAR-based SSDs supports screening-level evaluations of the potential ecotoxicity of compounds for which data are lacking.
DOI: 10.6084/m9.figshare.11358569
title: Boodoo_et_al_2019_Data

description: This file contains Supplementary information for the publication <b><i>Sources, transformation and fate of dissolved organic matter in the gravel bar of a pre-alpine stream</i> </b>by Boodoo et al. <br>
DOI: 10.6084/m9.figshare.11358578.v1
title: Dataset for: QSAR-based estimation of SSD parameters – an exploratory investigation

description: Ecological risk assessments are hampered by limited availability of ecotoxicity data. The present study aimed to explore the possibility of deriving SSD (species sensitivity distribution) parameters for non-tested compounds, based on simple physicochemical characteristics, known SSDs for data-rich compounds and a QSAR-type approach. The median toxicity of a data-poor chemical for species assemblages significantly varies with values of the physicochemical descriptors, especially when based on high quality SSD data (either from acute EC50s or chronic NOECs). Beyond exploratory uses, we discussed how the precision of QSAR-based SSDs can be improved to construct models that accurately predict the SSD-parameters of data poor chemicals. The current models show that the concept of QSAR-based SSDs supports screening-level evaluations of the potential ecotoxicity of compounds for which data are lacking.
DOI: 10.6084/m9.figshare.11358569.v2
title: Boodoo_et_al_2019_Data

description: This file contains Supplementary information for the publication <b><i>Sources, transformation and fate of dissolved organic matter in the gravel bar of a pre-alpine stream</i> </b>by Boodoo et al. <br>
DOI: 10.6084/m9.figshare.11358569.v1
title: Boodoo_et_al_2019_JGR_Biogeosciences_Data.xlsx

description: This file contains:<br>Discharge DataDOM optics dataGIS location dataHyporheic residence time data<br>
DOI: 10.6084/m9.figshare.11358527
title: Additional file 1: of Outcomes of 4 years of molecular genetic diagnosis on a panel of genes involved in premature aging syndromes, including laminopathies and related disorders

description: Tables S1. Alphabetical list of genes included in the NGS panel “premature ageing syndromes and laminopathies”. AD: automal dominant; AR: autosomal recessive; Mi: mitochondrial; XLR: X linked recessive; XLD: X linked dominant; Smu: somatic mutation; IC: isolated cases. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.11358527.v1
title: Additional file 1: of Outcomes of 4 years of molecular genetic diagnosis on a panel of genes involved in premature aging syndromes, including laminopathies and related disorders

description: Tables S1. Alphabetical list of genes included in the NGS panel “premature ageing syndromes and laminopathies”. AD: automal dominant; AR: autosomal recessive; Mi: mitochondrial; XLR: X linked recessive; XLD: X linked dominant; Smu: somatic mutation; IC: isolated cases. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.11358518
title: MOESM1 of Genepanel.iobio - an easy to use web tool for generating disease- and phenotype-associated gene lists

description: Additional file 1: Table S1. Summary of the diagnostic analysis for 16 previously diagnosed clinical cases, Table S2. Phenotype descriptions that were given to each analyst, whether each analyst was able to correctly identify the diagnostic gene using genepanel.iobio and a likely rationale for the analystsâ€™.
DOI: 10.6084/m9.figshare.11358518.v1
title: MOESM1 of Genepanel.iobio - an easy to use web tool for generating disease- and phenotype-associated gene lists

description: Additional file 1: Table S1. Summary of the diagnostic analysis for 16 previously diagnosed clinical cases, Table S2. Phenotype descriptions that were given to each analyst, whether each analyst was able to correctly identify the diagnostic gene using genepanel.iobio and a likely rationale for the analystsâ€™.
DOI: 10.6084/m9.figshare.11358503
title: MOESM6 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 6. A chronological overview and description of the Finnish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Finland.
DOI: 10.6084/m9.figshare.11358497
title: MOESM5 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 5. A chronological overview and description of the Swedish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Sweden.
DOI: 10.6084/m9.figshare.11358503.v1
title: MOESM6 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 6. A chronological overview and description of the Finnish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Finland.
DOI: 10.6084/m9.figshare.11358497.v1
title: MOESM5 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 5. A chronological overview and description of the Swedish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Sweden.
DOI: 10.6084/m9.figshare.11358485
title: MOESM4 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 4. A chronological overview and description of the Danish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Denmark.
DOI: 10.6084/m9.figshare.11358482
title: MOESM3 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 3. The source code used to calculate the inter-rater reliability. This source code shows the number of articles deemed eligible and non-eligible by both authors, how many they agreed on, and includes all details on how Cohen’s Kappa was calculated for all three countries to determine inter-rater reliability.
DOI: 10.6084/m9.figshare.11358485.v1
title: MOESM4 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 4. A chronological overview and description of the Danish policies on education and SEN. A point by point overview of the implications of each respective policy that was analysed for Denmark.
DOI: 10.6084/m9.figshare.11358470
title: MOESM1 of Autism and the right to education in the EU: policy mapping and scoping review of Nordic countries Denmark, Finland, and Sweden

description: Additional file 1. Key characteristics of the Nordic education systems. This table gives a brief overview of the core components of the Nordic education systems.