cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25606/surf.578c6039-98162327
title: The Cosmogrid Simulation: Statistical Properties of Small Dark Matter Halos (2048-493)

description: We present the results of the "Cosmogrid" cosmological N-body simulation suites based on the concordance LCDM model. The Cosmogrid simulation was performed in a 30 Mpc box with 2048³ particles. The mass of each particle is 1.28x10^5 Msun, which is sufficient to resolve ultra-faint dwarfs. We found that the halo mass function shows good agreement with the Sheth & Tormen fitting function down to ~10^7 Msun. We have analyzed the spherically averaged density profiles of the three most massive halos which are of galaxy group size and contain at least 170 million particles. The slopes of these density profiles become shallower than -1 at the inner most radius. We also find a clear correlation of halo concentration with mass. The mass dependence of the concentration parameter cannot be expressed by a single power law, however a simple model based on the Press-Schechter theory proposed by Navarro et al. gives reasonable agreement with this dependence. The spin parameter does not show a correlation with the halo mass. The probability distribution functions for both concentration and spin are well fitted by the log-normal distribution for halos with the masses larger than ~10^8 Msun. The subhalo abundance depends on the halo mass. Galaxy-sized halos have 50% more subhalos than ~10^11 Msun halos have. This is snapshot 493 of the 2048³ resolution collection.
DOI: 10.5281/zenodo.2594812
title: A consistency account of advice taking: Integrating the effects of advice consensus and advice distance

description: Which factors determine how individuals utilize advice? Previous research focused on either the consensus or the proximity of advice. We develop a general account of advice taking, arguing that both consensus and proximity influence the consistency (or variance) of the information on hand. From this account, we derive a number of predictions regarding the effects of consensus, distance, and amount of advice on confidence gains, judgment revision, and advice weighting. In two experiments, we manipulated advice distance continuously and consensus orthogonally to distance, while observing the amount of advice that individuals sampled. The results provide strong support for our consistency account of advice taking. It allows explaining a complex pattern of findings that neither consensus nor proximity alone can account for. This research advances our theoretical understanding of advice taking, while adding to a broader literature that highlights the importance of consistency of information for judgment and decision making.
description: This work was supported by the German Research Foundation under grants HU 1978/3–2 and HU 1978/7-1 awarded to Mandy Hütter.
DOI: 10.5281/zenodo.2595282
title: Configurations and parameters for DMPC and DMTAP lipids and their mixtures

description: <strong>Configurations</strong> containing cationic (charge: +1) DMTAP and DMPC lipids, water and neutralizing ions (when necessary) at 50 C for the following systems:


	Pure DMPC: 128 lipids (all DMPC, 0 Cl ions) and 3655 waters. File: dmpc128_20ns.pdb
	6% DMTAP: 128 lipids (120 DMPC, 8 DMTAP, 8 Cl ions) and 3647 waters. File: tap06_20ns.pdb
	16% DMTAP: 128 lipids (108 DMPC, 20 DMTAP, 20 Cl ions) and 3635 waters
	25% DMTAP: 128 lipids (96 DMPC, 32 DMTAP, 32 Cl ions) and 3623 waters
	31% DMTAP: 128 lipids (88 DMPC, 40 DMTAP, 40 Cl ions) and 3615 waters
	39% DMTAP: 128 lipids (78 DMPC, 50 DMTAP, 50 Cl ions) and 3605 waters
	50% DMTAP: 128 lipids (64 DMPC, 64 DMTAP, 64 Cl ions) and 3591 waters
	63% DMTAP: 128 lipids (48 DMPC, 80 DMTAP, 80 Cl ions) and 3575 waters
	75% DMTAP: 128 lipids (32 DMPC, 96 DMTAP, 96 Cl ions) and 3559 waters
	89% DMTAP: 128 lipids (14 DMPC, 114 DMTAP, 114 Cl ions) and 3541 waters
	Pure DMTAP: 128 lipids (all DMTAP, 128 Cl ions) and 3527 waters: File: dmtap128_24ns.pdb


Simulation time for each system is shown in the file name.

<strong>Parameter files are: </strong>dmpc.itp and dmtap.itp. The file lipid.itp is also needed (these are Berger lipids). Download lipid.itp from http://wcm.ucalgary.ca/tieleman/downloads

<strong>The PDF file</strong> (TablePDB.pdf ) contains a summary of the systems with area per lipid and error.

<strong>References:</strong>


	Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study, Gurtovenko, Patra, Karttunen, Vattulainen, Biophys. J. 86, 3461-3472 (2004).
	Effect of Monovalent Salt on Cationic Lipid Membranes As Revealed by Molecular Dynamics Simulations, A. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen J. Phys. Chem. B 109, 21126-21134 (2005).
	Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions, M.S. Miettinen, A.A. Gurtovenko, I. Vattulainen, and M. Karttunen, J. Phys. Chem. B 113, 9226-9234 (2009).
DOI: 10.5281/zenodo.2595283
title: Configurations and parameters for DMPC and DMTAP lipids and their mixtures

description: <strong>Configurations</strong> containing cationic (charge: +1) DMTAP and DMPC lipids, water and neutralizing ions (when necessary) at 50 C for the following systems:


	Pure DMPC: 128 lipids (all DMPC, 0 Cl ions) and 3655 waters. File: dmpc128_20ns.pdb
	6% DMTAP: 128 lipids (120 DMPC, 8 DMTAP, 8 Cl ions) and 3647 waters. File: tap06_20ns.pdb
	16% DMTAP: 128 lipids (108 DMPC, 20 DMTAP, 20 Cl ions) and 3635 waters
	25% DMTAP: 128 lipids (96 DMPC, 32 DMTAP, 32 Cl ions) and 3623 waters
	31% DMTAP: 128 lipids (88 DMPC, 40 DMTAP, 40 Cl ions) and 3615 waters
	39% DMTAP: 128 lipids (78 DMPC, 50 DMTAP, 50 Cl ions) and 3605 waters
	50% DMTAP: 128 lipids (64 DMPC, 64 DMTAP, 64 Cl ions) and 3591 waters
	63% DMTAP: 128 lipids (48 DMPC, 80 DMTAP, 80 Cl ions) and 3575 waters
	75% DMTAP: 128 lipids (32 DMPC, 96 DMTAP, 96 Cl ions) and 3559 waters
	89% DMTAP: 128 lipids (14 DMPC, 114 DMTAP, 114 Cl ions) and 3541 waters
	Pure DMTAP: 128 lipids (all DMTAP, 128 Cl ions) and 3527 waters: File: dmtap128_24ns.pdb


Simulation time for each system is shown in the file name.

<strong>Parameter files are: </strong>dmpc.itp and dmtap.itp. The file lipid.itp is also needed (these are Berger lipids). Download lipid.itp from http://wcm.ucalgary.ca/tieleman/downloads

<strong>The PDF file</strong> (TablePDB.pdf ) contains a summary of the systems with area per lipid and error.

<strong>References:</strong>


	Cationic DMPC/DMTAP Lipid Bilayers: Molecular Dynamics Study, Gurtovenko, Patra, Karttunen, Vattulainen, Biophys. J. 86, 3461-3472 (2004).
	Effect of Monovalent Salt on Cationic Lipid Membranes As Revealed by Molecular Dynamics Simulations, A. A. Gurtovenko, M. Miettinen, M. Karttunen, and I. Vattulainen J. Phys. Chem. B 109, 21126-21134 (2005).
	Ion Dynamics in Cationic Lipid Bilayer Systems in Saline Solutions, M.S. Miettinen, A.A. Gurtovenko, I. Vattulainen, and M. Karttunen, J. Phys. Chem. B 113, 9226-9234 (2009).
DOI: 10.17632/ttfn93rdt4.1
title: Data for: USE OF A 2.5% POLYACRYLAMIDE HYDROGEL IN THE MANAGEMENT OF JOINT LAMENESS IN A POPULATION OF FLAT RACING THOROUGHBREDS: A PILOT STUDY

description: Data set provides horse identification, sex and age of horse, joint involved, radiological score at time of administration, lameness grades at 0, 1, 4, 12 and 26 weeks, previous intra-articular treatments, joint effusion grades, range of motion of affected joints and statistical analysis of data set.
DOI: 10.5281/zenodo.2595281
title: Biotea-2-Bioschemas test data

description: Biotea-2-Bioschemas mapps Biotea model to schema.org following the approach proposed by Bioschemas. Here we present the test data used in Biotea GitHub pages, corresponding to 2596 PubMed Open Access (PMC-OA) subset publications together with the software used to render schema.org markup.

Date deposited includes (i) publications retrieved from PMC-OA API, i.e., full text in JATS/XML, (ii) ontology terms recognized in the abstracts and obtained from the NCBO Annotator, i.e., semantic annotations, and (iii) the same annotations following the PubAnnotation format.

Software deposited includes (i) biotea-bioschemas-metadata which parses JATS/XML files and creates Bioschemas markup including metadata, abstract and references, (ii) biotea-bioschemas-annotations which parses PubAnnotation annotations and creates Bioschemas markup, and (iii) biotea-bioschemas-showcase which uses the other two in order to display markup in a graphical basic way and render it as a script element in the HTML following the JSON-LD format. The corresonding GitHub repositories are: (i) https://github.com/biotea/biotea-bioschemas-metadata, (ii) https://github.com/biotea/biotea-bioschemas-annotations, and (iii) https://github.com/biotea/biotea-bioschemas-showcase.

Biotea-2-bioschemas can be seen in action at http://biotea.github.io/bioschemas/
description: {"references": ["Gray AJG, Goble CA, Jim\u00e9nez R. Bioschemas: From Potato Salad to Protein Annotation. International Semantic Web Conference. 2017; Available: https://pdfs.semanticscholar.org/74ec/a9c89622bff731b21b03acb4f2400a0f00fa.pdf", "Garcia Castro LJ, McLaughlin C, Garcia A. Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J Biomed Semantics. BioMed Central; 2013;4: S5.", "Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M. Biotea: semantics for Pubmed Central. PeerJ. PeerJ Inc.; 2018;6: e4201.", "Jonquet C, Shah NH, Youn CH, Musen MA, Storey M-A. NCBO Annotator: Semantic Annotation of Biomedical Data. Proceedings of the 2009 International Semantic Web Conference. 2009. Available:", "Kim J-D, Wang Y. PubAnnotation: a persistent and shareable corpus and annotation repository. Proceedings of the 2012 Workshop on Biomedical Natural Language Processing. Association for Computational Linguistics; 2012. pp. 202\u2013205."]}
DOI: 10.5281/zenodo.2595280
title: Biotea-2-Bioschemas test data

description: Biotea-2-Bioschemas mapps Biotea model to schema.org following the approach proposed by Bioschemas. Here we present the test data used in Biotea GitHub pages, corresponding to 2596 PubMed Open Access (PMC-OA) subset publications together with the software used to render schema.org markup.

Date deposited includes (i) publications retrieved from PMC-OA API, i.e., full text in JATS/XML, (ii) ontology terms recognized in the abstracts and obtained from the NCBO Annotator, i.e., semantic annotations, and (iii) the same annotations following the PubAnnotation format.

Software deposited includes (i) biotea-bioschemas-metadata which parses JATS/XML files and creates Bioschemas markup including metadata, abstract and references, (ii) biotea-bioschemas-annotations which parses PubAnnotation annotations and creates Bioschemas markup, and (iii) biotea-bioschemas-showcase which uses the other two in order to display markup in a graphical basic way and render it as a script element in the HTML following the JSON-LD format. The corresonding GitHub repositories are: (i) https://github.com/biotea/biotea-bioschemas-metadata, (ii) https://github.com/biotea/biotea-bioschemas-annotations, and (iii) https://github.com/biotea/biotea-bioschemas-showcase.

Biotea-2-bioschemas can be seen in action at http://biotea.github.io/bioschemas/
description: {"references": ["Gray AJG, Goble CA, Jim\u00e9nez R. Bioschemas: From Potato Salad to Protein Annotation. International Semantic Web Conference. 2017; Available: https://pdfs.semanticscholar.org/74ec/a9c89622bff731b21b03acb4f2400a0f00fa.pdf", "Garcia Castro LJ, McLaughlin C, Garcia A. Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data. J Biomed Semantics. BioMed Central; 2013;4: S5.", "Garcia A, Lopez F, Garcia L, Giraldo O, Bucheli V, Dumontier M. Biotea: semantics for Pubmed Central. PeerJ. PeerJ Inc.; 2018;6: e4201.", "Jonquet C, Shah NH, Youn CH, Musen MA, Storey M-A. NCBO Annotator: Semantic Annotation of Biomedical Data. Proceedings of the 2009 International Semantic Web Conference. 2009. Available:", "Kim J-D, Wang Y. PubAnnotation: a persistent and shareable corpus and annotation repository. Proceedings of the 2012 Workshop on Biomedical Natural Language Processing. Association for Computational Linguistics; 2012. pp. 202\u2013205."]}
DOI: 10.5281/zenodo.2595295
title: NaCl force field study: All the radial distribution functions and final configurations (PDB)

description: The package contains all the radial distribution functions and final configurations (PDB) from our NaCl force field study


	Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: Diffusion, free energy of hydration and structural properties, M. Patra and M. Karttunen, physics/0211059. J. Comp. Chem. 25, 678-689 (2004) .
DOI: 10.23721/1503518
title: Provider-Network-Statistical-Measures (2019-01-05)

description: This dataset contains different statistical measures that were computed for the network representation between various Internet vantage points and ASNs for certain dominant pairings of providers of Internet-related services. This provider dataset consists of multiple files. The suffix attached to each file represents the overlays that were considered during the computation  of the measures. The following overlays were considered in this dataset 1) AS path 2) AS link 3) Geolocation 4) Organizational 5) Prefix.

Each record in the provided data files contains the following measures: 1) Dominance value of the provider pairing (a value between 0 and 1) 2) Nodes (the number of nodes in the graph) 3) Edges (the number of edges in the graph) 4)  Density (the network graph density) 5) Assortativity (the network graph assortativity) 6) Transitivity (the network graph transitivity) 7) Path diversity (a measure of path diversity for the different vantage points considered.) 8) Path Efficiency (a measure of path efficiency for the different vantage points considered.) 9) Degree Centrality (Summary statistics for the degree centrality values of different nodes within the graph) 10) Betweenness Centrality (Summary statistics for the 
betweenness centrality values of different nodes within the graph) 11) Eigenvector Centrality (Summary statistics for the eigenvector centrality values of different nodes within the graph)
DOI: 10.5281/zenodo.2595294
title: NaCl force field study: All the radial distribution functions and final configurations (PDB)

description: The package contains all the radial distribution functions and final configurations (PDB) from our NaCl force field study


	Systematic comparison of force fields for microscopic simulations of NaCl in aqueous solutions: Diffusion, free energy of hydration and structural properties, M. Patra and M. Karttunen, physics/0211059. J. Comp. Chem. 25, 678-689 (2004) .
DOI: 10.17632/6vcccg428f.1
title: Data for: Serum CCN3 levels are increased in type 2 diabetes mellitus and associated with obesity, insulin resistance and inflammation

description: Baseline and OGTT data of study subjects. Baseline data included anthropometric parameters and biochemical parameters in 205 control subjects and 219 patients with newly diagnosed T2DM. OGTT data contained anthropometric parameters and blood glucose and serum CCN3 levels at indicated time points of 34 healthy subjects (16 man and 18 women).
DOI: 10.5517/ccdc.csd.cc21h61t
title: CCDC 1891435: Experimental Crystal Structure Determination

description: Related Article: Jing Sun, Wang Jiang, Chao-Guo Yan|2019|Org.Chem.Front.|6|1428|doi:10.1039/C9QO00079H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20kq3f
title: CCDC 1864064: Experimental Crystal Structure Determination

description: Related Article: Volodymyr Sukach, Serhii Melnykov, Sylvain Bertho, Iryna Diachenko, Pascal Retailleau, Mykhailo Vovk, Isabelle Gillaizeau|2019|Org.Lett.|21|2340|doi:10.1021/acs.orglett.9b00622
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20ytzs
title: CCDC 1875716: Experimental Crystal Structure Determination

description: Related Article: Elena A. Zakharova, Olga I. Shmatova, Irina V. Kutovaya, Victor N. Khrustalev, Valentine G. Nenajdenko|2019|Org.Biomol.Chem.|17|3433|doi:10.1039/C9OB00229D
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc217x18
title: CCDC 1884429: Experimental Crystal Structure Determination

description: Related Article: Abhinav Joseph, Joana S. Rodrigues Alves, Carlos E. S. Bernardes, M. Fátima M. Piedade, Manuel E. Minas da Piedade|2019|CrystEngComm|21|2220|doi:10.1039/C8CE02108B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc217x29
title: CCDC 1884430: Experimental Crystal Structure Determination

description: Related Article: Abhinav Joseph, Joana S. Rodrigues Alves, Carlos E. S. Bernardes, M. Fátima M. Piedade, Manuel E. Minas da Piedade|2019|CrystEngComm|21|2220|doi:10.1039/C8CE02108B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc217x3b
title: CCDC 1884431: Experimental Crystal Structure Determination

description: Related Article: Abhinav Joseph, Joana S. Rodrigues Alves, Carlos E. S. Bernardes, M. Fátima M. Piedade, Manuel E. Minas da Piedade|2019|CrystEngComm|21|2220|doi:10.1039/C8CE02108B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc217x4c
title: CCDC 1884432: Experimental Crystal Structure Determination

description: Related Article: Abhinav Joseph, Joana S. Rodrigues Alves, Carlos E. S. Bernardes, M. Fátima M. Piedade, Manuel E. Minas da Piedade|2019|CrystEngComm|21|2220|doi:10.1039/C8CE02108B
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21h62v
title: CCDC 1891436: Experimental Crystal Structure Determination

description: Related Article: Jing Sun, Wang Jiang, Chao-Guo Yan|2019|Org.Chem.Front.|6|1428|doi:10.1039/C9QO00079H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21h63w
title: CCDC 1891437: Experimental Crystal Structure Determination

description: Related Article: Jing Sun, Wang Jiang, Chao-Guo Yan|2019|Org.Chem.Front.|6|1428|doi:10.1039/C9QO00079H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21h64x
title: CCDC 1891438: Experimental Crystal Structure Determination

description: Related Article: Jing Sun, Wang Jiang, Chao-Guo Yan|2019|Org.Chem.Front.|6|1428|doi:10.1039/C9QO00079H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc21hwhy
title: CCDC 1892100: Experimental Crystal Structure Determination

description: Related Article: Wenhui Wang, Hanmin Huang|2019|Chem.Commun.|55|3947|doi:10.1039/C9CC01374A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1zn1k7
title: CCDC 1836519: Experimental Crystal Structure Determination

description: Related Article: Hao Miao, Miao Li, Hong-Qing Li, Fu-Xing Shen, Yi-Quan Zhang, Xin-Yi Wang|2019|Dalton Trans.|48|4774|doi:10.1039/C9DT00207C
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20wlxf
title: CCDC 1873575: Experimental Crystal Structure Determination

description: Related Article: Angeliki A. Athanasopoulou, Luca M. Carrella, Eva Rentschler|2019|Dalton Trans.|48|4779|doi:10.1039/C9DT00552H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20wlyg
title: CCDC 1873576: Experimental Crystal Structure Determination

description: Related Article: Angeliki A. Athanasopoulou, Luca M. Carrella, Eva Rentschler|2019|Dalton Trans.|48|4779|doi:10.1039/C9DT00552H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.