cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/xjbccp
title: Data for VBHC in Latin America

description: These files have disaggregated data for value-based healthcare in Latin America and the codebook used for expert evaluation of each country.
DOI: 10.7910/dvn/xj319p
title: Wright Casebook Edited; Docketed Case: 85-5601
DOI: 10.7910/dvn/tlj92e
title: Replication Data for: Reduction of viscosity of heavy crude with micro-organisms

description: Our objective was to assess the ability of some selected microorganisms to reduce the viscosity of heavy crude oil, singly and in association at a constant temperature of 29 deg C and within a 7-minutes investigative duration. Key assumptions in this experiment are zero growth and death rates of microorganisms
DOI: 10.7910/dvn/tnwenh
title: Replication Data for: "Do Enclaves Remediate Social Inequality?"

description: These files include the Stata data and do files necessary to replicate all tables and figures in Karpowitz and Mendelberg, "Do Enclaves Remediate Social Inequality?"
DOI: 10.7910/dvn/hbn4w9
title: Wright Files I-Z Edited; Misc 2056
DOI: 10.7910/dvn/hgd1jp
title: INFLUENCE OF CUTTING PARAMETERS ON THRUST FORCE AND TORQUE IN DRILLING OF ALUMINUM, CAST IRON AND EN28.

description: Understanding of the fundamentals of metal cutting processes through an experimental study has some
limitations. Metal cutting modelling provides an alternative way for better understanding of machining
processes under different cutting conditions. Using the capabilities of finite element models, it has recently
become possible to deal with complicated conditions in metal cutting. Finite element modelling makes it
possible to model several factors that are present during the chip formation including friction at the chip
tool interface. The aim of improved understanding of metal cutting is to find ways to have high quality
machined surfaces, while minimizing machining time and tooling cost. Friction behaviour at the chip-tool
interface is one of the complicated subjects in metal cutting that still needs a lot of work. Several models
have been presented in the past with different assumptions. In the current model, the Coulomb friction
model, which assumes a constant friction coefficient, is used to model the friction in order to simplify the
model. The effect of the constant friction model is considered by analyzing the result for several friction
coefficient values and comparing them to the previous work. As simulation tool for the purpose of this study,
the FEM software used is DEFORM 3D. DEFORM 3D is a robust simulation tool that uses the FEM to
model complex machining process in three dimensions. The simulation results on cutting forces and thrust
forces, and shear angle are compared with experimental data in order to indicate the consistency and
accuracy of the results when conducting the comparison.
DOI: 10.22033/esgf/cmip6.2081
title: NASA-GISS GISS-E2-2-G model output prepared for CMIP6 CMIP

description: Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets: These data include all datasets published for 'CMIP6.CMIP.NASA-GISS.GISS-E2-2-G' with the full Data Reference Syntax following the template 'mip_era.activity_id.institution_id.source_id.experiment_id.member_id.table_id.variable_id.grid_label.version'.
 
 The GISS-E2-2-G climate model, released in 2019, includes the following components:
 aerosol: varies with physics-version (p==1 none, p==3 OMA, p==4 TOMAS, p==5 MATRIX), atmos: GISS-E2.2 (High-top, 2 x 2.5 degrees; 144 x 90 longitude/latitude; 102 levels; top level 0.002 hPa), atmosChem: varies with physics-version (p==1 Non-interactive, p&gt;1 GPUCCINI), land: GISS LSM, landIce: Fixed, ocean: GISS Ocean (GO1, 1 degree; 360 x 180 longitude/latitude; 40 levels; top grid cell 0-10m), seaIce: GISS SI. 
The model was run by the Goddard Institute for Space Studies, New York, NY 10025, USA (NASA-GISS) in native nominal resolutions: aerosol: 250 km, atmos: 250 km, atmosChem: 250 km, land: 250 km, landIce: 250 km, ocean: 100 km, seaIce: 100 km. 

Project: These data have been generated as part of the internationally-coordinated Coupled Model Intercomparison Project Phase 6 (CMIP6; see also GMD Special Issue: http://www.geosci-model-dev.net/special_issue590.html). The simulation data provides a basis for climate research designed to answer fundamental science questions and serves as resource for authors of the Sixth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC-AR6).

CMIP6 is a project coordinated by the Working Group on Coupled Modelling (WGCM) as part of the World Climate Research Programme (WCRP). Phase 6 builds on previous phases executed under the leadership of the Program for Climate Model Diagnosis and Intercomparison (PCMDI) and relies on the Earth System Grid Federation (ESGF) and the Centre for Environmental Data Analysis (CEDA) along with numerous related activities for implementation. The original data is hosted and partially replicated on a federated collection of data nodes, and most of the data relied on by the IPCC is being archived for long-term preservation at the IPCC Data Distribution Centre (IPCC DDC) hosted by the German Climate Computing Center (DKRZ).

The project includes simulations from about 120 global climate models and around 45 institutions and organizations worldwide. - Project website: https://pcmdi.llnl.gov/CMIP6.
DOI: 10.22033/esgf/input4mips.10421
title: input4MIPs.CMIP6.RFMIP.UColorado.UColorado-RFMIP-1-2

description: CMIP6 Forcing Datasets (input4MIPs): These data include all datasets published for 'input4MIPs.CMIP6.RFMIP.UColorado.UColorado-RFMIP-1-2' with the full Data Reference Syntax following the template 'activity_id.mip_era.target_mip.institution_id.source_id.realm.frequency.variable_id.grid_label'.
 
 The model UColorado-RFMIP-1-2 (UColorado-RFMIP-1-2) was run by the UColorado (UColorado) in native nominal resolutions: unknown. 

Project: The forcing datasets (and boundary conditions) needed for CMIP6 experiments are being prepared by a number of different experts. Initially many of these datasets may only be available from those experts, but over time as part of the 'input4MIPs' activity most of them will be archived by PCMDI and served by the Earth System Grid Federation (https://esgf-node.llnl.gov/search/input4mips/ ). More information is available in the living document: http://goo.gl/r8up31 .
DOI: 10.22033/esgf/input4mips.10463
title: RFMIP conditions for experiment rad-irf

description: CMIP6 Forcing Datasets (input4MIPs): These data include all datasets published for 'input4MIPs.CMIP6.RFMIP.UColorado' with the full Data Reference Syntax following the template 'activity_id.mip_era.target_mip.institution_id.source_id.realm.frequency.variable_id.grid_label'.
 
 The model UColorado-RFMIP (UColorado-RFMIP) was run by the UColorado (UColorado) in native nominal resolutions: unknown. 

Project: The forcing datasets (and boundary conditions) needed for CMIP6 experiments are being prepared by a number of different experts. Initially many of these datasets may only be available from those experts, but over time as part of the 'input4MIPs' activity most of them will be archived by PCMDI and served by the Earth System Grid Federation (https://esgf-node.llnl.gov/search/input4mips/ ). More information is available in the living document: http://goo.gl/r8up31 .
DOI: 10.15468/dl.hkge8n
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.30_1",
 "TaxonKey is Aquila heliaca Savigny, 1809"
 ]
}

 The dataset includes 42 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006473-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/7wf-j8p-elr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ehe-h6y-a4a
title: Lithothamnion Heydrich, 1897

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1pr-zaa-qw4
title: †Krumbeckiella timorensis (Krumbeck, 1924)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lfq-daw-yfa
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/veg-htj-5xy
title: †Unedogemmula boreoturricula (Kautsky, 1925)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/adf-dqp-3p2
title: †Actinastrea d'Orbigny, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hnm-dzj-xgj
title: †Streptorhynchus King, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/24m-1rr-ajz
title: Rhynchonellata Williams, Carlson, Brunton, Holmer & Popov, 1996

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l8m-932-x9k
title: Griffithides

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m4c-bea-l2r
title: Porites Link, 1807

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6v8-ba2-d96
title: Microtus (Microtus) arvalis (Pallas, 1779)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jgk-a0j-qtz
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5r0-s2r-800
title: Cephalopoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/97x-2g1-r50
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dgc-1xt-3hc
title: Dipsastraea speciosa (Dana, 1846)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ey1-r2e-8gg
title: Arcestes

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/y6s-e08-smh
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fd4-lce-955
title: Echinodermata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/raz-4y3-mb6
title: Porifera Grant, 1836

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9rj-9n1-9wk
title: †Favorites Tschigova, 1977

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ba1-5kh-m34
title: †Leioceras opalinum (Reinecke, 1818)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xda-b24-1k1
title: †Lepidorbitoides Silvestri, 1907

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3mb-lne-l5l
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zg3-0l6-gtk
title: †Orbitoides d'Orbigny, in Lyell, 1848

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/01s-snt-r2s
title: Anatomites

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b4l-967-rg1
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fxc-2b3-1yy
title: †Nummulites granifer Douvillé, 1919

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/pca-wmh-m60
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zjy-e8v-98h
title: Fissurina Reuss, 1850

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kgs-063-nxn
title: Montastraea cavernosa (Linnaeus, 1767)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ya5-fnp-gdh
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/khy-vhj-sny
title: †Fusulinidae Möller, 1878

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wla-tx2-ark
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ttw-em2-4hy
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7ey-wc6-rt1
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/exp-0ef-vfx
title: Gastropoda Cuvier, 1795

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/t4c-t1h-913
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9dg-pk1-q6m
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x1a-2kw-62s
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/23p-fnc-bta
title: Octineon Moseley in Fowler, 1894

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wab-ynn-lb7
title: †Nummulites javanus Verbeek, 1891

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.jpgapk
title: Occurrence Download

description: A dataset containing 404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metacolpodes buchannani (Hope, 1831)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 404 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008946-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/inscriptifact-ouc110820134
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.25549/inscriptifact-ouc110820163
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.5281/zenodo.17592044
title: NLRP4-ER Stress-CCL5 axis as a translational target for NK cell-based immunotherapy in lung cancer

description: RNA-seq was performed to investigate the transcriptional effects of Nlrp4 overexpression in mouse Lewis lung carcinoma (LLC) cells. LLC-Vector control (Ctrl) and LLC-Nlrp4 overexpression (OE) groups were compared to identify differentially expressed genes (DEGs) and to evaluate immune cell infiltration using CIBERSORT analysis.
DOI: 10.5281/zenodo.17592045
title: NLRP4-ER Stress-CCL5 axis as a translational target for NK cell-based immunotherapy in lung cancer

description: RNA-seq was performed to investigate the transcriptional effects of Nlrp4 overexpression in mouse Lewis lung carcinoma (LLC) cells. LLC-Vector control (Ctrl) and LLC-Nlrp4 overexpression (OE) groups were compared to identify differentially expressed genes (DEGs) and to evaluate immune cell infiltration using CIBERSORT analysis.
DOI: 10.25549/inscriptifact-ouc110820174
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110820171
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110820085
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110819904
title: Persepolis Fortification Elamite Tablet 2272.101, Fort 2272.101

description: [Text Description:] Administrative text ❧ [Text or Publication Number Note:] Fort 2272.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. ❧ [Physical Object Note:] Upper left, upper right and lower right corners broken off. Damage on obverse, reverse.
DOI: 10.25549/inscriptifact-ouc110819923
title: Persepolis Fortification Elamite Tablet 2267.101, Fort 2267.101

description: [Text Description:] Administrative text with seal ❧ [Text or Publication Number Note:] Fort 2267.101 ❧ [Excavation Description:] Found during Oriental Institute's excavations in Spring, 1933, near the northeastern corner of the stone platform of Persepolis, in two small rooms of a bastion in the fortification wall ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Clay tablet with cuneiform text. Seal impression on right edge. ❧ [Physical Object Note:] Left side of tablet missing.
DOI: 10.5281/zenodo.18271517
title: scPDB-Enhanced: An expansion of scPDB including all experimentally observed binding sites

description: Overview

The scPDB is one of the most widely used datasets for training ligand binding site (LBS) predictors. However, it has a significant limitation: it includes only one ligand per structure, usually focusing on the primary orthosteric site and omitting other valid binding cavities.

To overcome this, we cross-referenced scPDB entries with AHoJ-DB to identify all ligands, and thus all binding sites, experimentally observed across all available conformations of a given protein. By aggregating these observations, we provide a ground truth that includes sites often missed in the original dataset.

Files Description

1. scPDB-sites.csv

A list of individual binding sites. Each row represents a single site identified in a specific protein structure. 





Format: PDB_ID;Chain;Ligand_Name;Residue_Indices




Example: 1uh5;B;NAD;104 105 106 110 111 112 131 134 167 168 169 170 215 ...


Note: Ligand_Name=UNKNOWN denotes binding sites from the original scPDB dataset. 


The residue indices labelling is auth (i.e., auth_seq_id)

 2. scPDB-train.csv

The primary file for model training. This file merges all identified binding sites for each unique protein and maps them directly onto the primary sequence.





Format: PDB_ID;Chain;Binding_Residues;Full_Sequence




Note: Binding residues are listed as ResidueType + Index (e.g., G8) The residue indices use 0-based indexing, allowing for direct indexing into the sequence string (e.g., an index of 8 refers to the 9th position in the sequence).




Example: 1uh5;B;G8 I9 G10 G14 Y15 ...;NEDICFIAGIGDTNGYGWGIAKEL...
DOI: 10.5281/zenodo.18271516
title: scPDB-Enhanced: An expansion of scPDB including all experimentally observed binding sites

description: Overview

The scPDB is one of the most widely used datasets for training ligand binding site (LBS) predictors. However, it has a significant limitation: it includes only one ligand per structure, usually focusing on the primary orthosteric site and omitting other valid binding cavities.

To overcome this, we cross-referenced scPDB entries with AHoJ-DB to identify all ligands, and thus all binding sites, experimentally observed across all available conformations of a given protein. By aggregating these observations, we provide a ground truth that includes sites often missed in the original dataset.

Files Description

1. scPDB-sites.csv

A list of individual binding sites. Each row represents a single site identified in a specific protein structure. 





Format: PDB_ID;Chain;Ligand_Name;Residue_Indices




Example: 1uh5;B;NAD;104 105 106 110 111 112 131 134 167 168 169 170 215 ...


Note: Ligand_Name=UNKNOWN denotes binding sites from the original scPDB dataset. 


The residue indices labelling is auth (i.e., auth_seq_id)

 2. scPDB-train.csv

The primary file for model training. This file merges all identified binding sites for each unique protein and maps them directly onto the primary sequence.





Format: PDB_ID;Chain;Binding_Residues;Full_Sequence




Note: Binding residues are listed as ResidueType + Index (e.g., G8) The residue indices use 0-based indexing, allowing for direct indexing into the sequence string (e.g., an index of 8 refers to the 9th position in the sequence).




Example: 1uh5;B;G8 I9 G10 G14 Y15 ...;NEDICFIAGIGDTNGYGWGIAKEL...