cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mg75ex
title: Occurrence Download

description: A dataset containing 1945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Peucedanum oreoselinum",
 "Continent is Europe",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 100",
 "Year is greater than or equal to 1970",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "not" : {
 "BasisOfRecord" : [
 "is Material citation"
 ]
 }
 }
 ]
}

 The dataset includes 1945 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032373-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvcxn7
title: Occurrence Download

description: A dataset containing 416 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rana arvalis",
 "Country is Germany",
 "Month is March",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 1980-2020"
 ]
}

 The dataset includes 416 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032370-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3kn7t
title: Occurrence Download

description: A dataset containing 29832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Watsonalla cultraria"
 ]
}

 The dataset includes 29832 records from 187 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032369-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zbvxua
title: Occurrence Download

description: A dataset containing 761 records in GBIF matching the query:
SELECT
 specieskey,
 species,
 SUM(COALESCE(individualcount, 1)) total_individuals,
 COUNT(*) total_records
FROM
 occurrence
WHERE
 occurrence.continent = 'EUROPE'
 AND CAST(occurrence.orderkey AS INTEGER) = 729
 AND occurrence.basisofrecord = 'HUMAN_OBSERVATION'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND occurrence.specieskey IS NOT NULL
GROUP BY
 occurrence.specieskey,
 occurrence.species
ORDER BY
 total_individuals DESC

 The dataset's 761 records were derived from 10587 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032337-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efx999
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Falco duboisi Cowles, 1994)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000733-230224095556074/datasets/export for details.
DOI: 10.15468/dl.v8usns
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aechmea mcvaughii L.B.Sm."
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001948-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgzw53
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albuca fragrans Jacq."
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007435-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvjhbw
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amaurornis magnirostris Lambert, 1998)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000772-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gzne65
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albuca fibrotunicata Gledhill & Oyewole"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007431-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vxn9xt
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Phyllotrox Schénherr, 1843"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061230-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmkkum
title: Occurrence Download

description: A dataset containing 1613 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aechmea mertensii (G.Mey.) Schult. & Schult.f."
 ]
}

 The dataset includes 1613 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001953-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kmztq
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Equus caballus Linnaeus, 1758"
 ]
}

 The dataset includes 36 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000784-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qddm3q
title: Occurrence Download

description: A dataset containing 18297376 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Corvus brachyrhynchos C.L.Brehm, 1822"
 ]
}

 The dataset includes 18297376 records from 155 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007416-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6fv25
title: Occurrence Download

description: A dataset containing 98 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 28eb1a3f-1c15-4a95-931a-4af90ecb574d",
 "TaxonKey is Rhynchium brunneum (Fabricius, 1793)"
 ]
}

 The dataset includes 98 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001963-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2wmn6
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present",
 "TaxonKey is Elaeidobius kamerunicus (Faust, 1898) Haran, Beaudoin-Ollivier, Benoit & Kuschel, 2020"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007434-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qbdyvm
title: Occurrence Download

description: A dataset containing 3834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "OccurrenceStatus is Present",
 "TaxonKey is Hoplias malabaricus (Bloch, 1794)"
 ]
}

 The dataset includes 3834 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000774-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xrja7
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paronychia libertadiana Chaudhri"
 ]
}

 The dataset includes 20 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061271-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s87msy
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aechmea murcae (L.B.Sm.) L.B.Sm. & M.A.Spencer"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001966-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zmztq8
title: Occurrence Download

description: A dataset containing 1862 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Locustella davidi (La Touche, 1923))",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1862 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000777-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x4qrhn
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Albuca flaccida Jacq."
 ]
}

 The dataset includes 86 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007432-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bhd4uu
title: Occurrence Download

description: A dataset containing 425 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paronychia chlorothyrsa Murb."
 ]
}

 The dataset includes 425 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0061235-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3btv9y
title: Occurrence Download

description: A dataset containing 1508017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Repatriated is TRUE",
 "Country is Norway"
 ]
}

 The dataset includes 1508017 records from 1405 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001950-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxdvhh
title: Occurrence Download

description: A dataset containing 5174 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "TaxonKey is one of (Desmodus rotundus [GBIF Backbone Taxonomy], Choeroniscus godmani [GBIF Backbone Taxonomy], Choeroniscus minor [GBIF Backbone Taxonomy], Choeroniscus periosus [GBIF Backbone Taxonomy], Enchisthenes hartii [GBIF Backbone Taxonomy], Glossophaga longirostris [GBIF Backbone Taxonomy], Leptonycteris curasoae [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 5174 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009569-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.olb2ju
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025693-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mqbrn2
title: Occurrence Download

description: A dataset containing 1119416297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2011-2021"
 ]
}

 The dataset includes 1119416297 records from 6992 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0098848-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xepqvh
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACM9001"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022155-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybk2wd
title: Occurrence Download

description: A dataset containing 41275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cenchrus ciliaris, Cenchrus ciliaris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 41275 records from 340 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022152-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eybjjg
title: Occurrence Download

description: A dataset containing 166 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Turnera hilaireana"
 ]
}

 The dataset includes 166 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022156-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15860635
title: Ethical Challenges and Opportunities at the intersection of One Health and Open Science in India: A Scoping Review

description: This is the dataset used for the scoping review (phase 1) of the project titled- Responsible Open Science for One Health in South Asia (REASON-SA). The aim of the review was to explore how responsible Open Science principles challenge or complement notions of data ownership, privacy, and participation in the One Health research ecosystem in India.
DOI: 10.5281/zenodo.15860636
title: Ethical Challenges and Opportunities at the intersection of One Health and Open Science in India: A Scoping Review

description: This is the dataset used for the scoping review (phase 1) of the project titled- Responsible Open Science for One Health in South Asia (REASON-SA). The aim of the review was to explore how responsible Open Science principles challenge or complement notions of data ownership, privacy, and participation in the One Health research ecosystem in India.
DOI: 10.15468/dl.4q3q4d
title: Occurrence Download

description: A dataset containing 83 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Adelges piceae",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 83 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022157-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnwdch
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Portugal",
 "HasCoordinate is true"
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022159-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjma8h
title: Occurrence Download

description: A dataset containing 1172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lolium multiflorum",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1172 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022160-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcczsz
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nemacheilus masyai"
 ]
}

 The dataset includes 32 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022158-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vzu7g4
title: Occurrence Download

description: A dataset containing 7698 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Perca fluviatilis",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7698 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022161-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2hbpfd
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Oryza alta)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 228 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022164-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7x9nc
title: Occurrence Download

description: A dataset containing 63852 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari neglectum"
 ]
}

 The dataset includes 63852 records from 1082 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022064-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p6n5uq
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Parnassius apollo vinningensis"
 ]
}

 The dataset includes 85 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022165-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6b592h
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceutorhynchus obstrictus",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 53 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022166-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7av4n2
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Noemacheilus masyae"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022167-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pekzp2
title: Occurrence Download

description: A dataset containing 2219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "TaxonKey is Smilax glabra"
 ]
}

 The dataset includes 2219 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022168-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12538129
title: Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication: creating new models

description: This data repository provides code and general instructions for creating new LINE-1 (L1) insertion site models as described in Flasch, et al., 2019:https://www.sciencedirect.com/science/article/pii/S0092867419302338?via%3Dihub

Please see file L1_Simulation_Files_help.docx for more detailed information.

File L1Simulation_filelist.xlsx lists the files described in the Word file and found in L1Simulations.tar.gz.

Required large file ChrmsALL_table_sortEN.bed.gz is found individually. Importantly, like the paper analysis, this file is specific to the hg19 version of the human genome.

Please see the companion Zenodo data set10.5281/zenodo.8233858if you only want to access our insertion data and the resulting models we created.
DOI: 10.5281/zenodo.12538130
title: Genome-wide de novo L1 Retrotransposition Connects Endonuclease Activity with Replication: creating new models

description: This data repository provides code and general instructions for creating new LINE-1 (L1) insertion site models as described in Flasch, et al., 2019:https://www.sciencedirect.com/science/article/pii/S0092867419302338?via%3Dihub

Please see file L1_Simulation_Files_help.docx for more detailed information.

File L1Simulation_filelist.xlsx lists the files described in the Word file and found in L1Simulations.tar.gz.

Required large file ChrmsALL_table_sortEN.bed.gz is found individually. Importantly, like the paper analysis, this file is specific to the hg19 version of the human genome.

Please see the companion Zenodo data set10.5281/zenodo.8233858if you only want to access our insertion data and the resulting models we created.