cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3931236
title: A large-scale wide-baseline light field dataset - Part I

description: This dataset is the Part I of a large-scale, synthetic wide-baseline light field dataset (called WLF), including 345 light fields. Each light field provides 9x9 angular (RGB) images and ground truth disparities. This light field dataset involves the spatial resolution (512x512) images only. The dataset is originally created for training the deep learning-based models for depth estimation. You might use this dataset for other tasks if possible. You might also have a try to play with this dataset using our code in https://github.com/YanWQ/LLF-Net.
DOI: 10.6084/m9.figshare.14134397.v1
title: Supplemental tables "An RNAi-based phenotypic screening of clinically relevant transcription factors regulating human adipogenesis and adipocyte metabolism"

description: These are supplemental tables to the study ""An RNAi-based phenotypic screening of clinically relevant transcription factors regulating human adipogenesis and adipocyte metabolism"The abstract: <b>Objective </b>Healthy hyperplasic (many but smaller fat cells) white adipose tissue (WAT) expansion is mediated by recruitment, proliferation and/or differentiation of new fat cells. This process (adipogenesis) is controlled by transcriptional programs mostly identified in rodents. A systemic investigation of adipogenic human transcription factors (TFs) that are relevant for metabolic conditions has not been revealed previously. <b>Methods </b>TFs regulated in WAT by obesity, adipose morphology, cancer cachexia and insulin resistance were selected from microarrays. Their role in differentiation of human adipose tissue-derived stem cells (hASC) was investigated by RNA interference (RNAi) screen. Lipid accumulation, cell number and lipolysis were measured for all screened factors (148 TFs). RNA (RNAseq), protein (western blot) expression, insulin and catecholamine responsiveness were examined in hASC following siRNA treatment of selected target TFs.<b> </b> <b>Results </b>Analysis of TFs regulated by metabolic conditions in human WAT revealed that many of them belong to adipogenesis-regulating pathways. The RNAi screen identified 39 genes that affected fat cell differentiation <i>in vitro</i>, where 11 genes were novel. Of the latter JARID2 stood out as being necessary for formation of healthy fat cell metabolic phenotype by regulating expression of multiple fat-cell phenotype-specific genes. <b>Conclusions </b>This comprehensive RNAi screening in hASC suggests that a large proportion of WAT TFs that are impacted by metabolic conditions might be important for hyperplastic adipose tissue expansion. The screen also identified JARID2 as a novel TF essential for the development of functional adipocytes. @font-face {font-family:"Cambria Math"; panose-1:2 4 5 3 5 4 6 3 2 4; mso-font-charset:0; mso-generic-font-family:roman; mso-font-pitch:variable; mso-font-signature:-536870145 1107305727 0 0 415 0;}p.MsoNormal, li.MsoNormal, div.MsoNormal {mso-style-unhide:no; mso-style-qformat:yes; mso-style-parent:""; margin:0cm; margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:12.0pt; font-family:"Times New Roman",serif; mso-fareast-font-family:"Times New Roman"; mso-ansi-language:SV; mso-fareast-language:SV;}.MsoChpDefault {mso-style-type:export-only; mso-default-props:yes; font-family:"Calibri",sans-serif; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:Calibri; mso-fareast-theme-font:minor-latin; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:Latha; mso-bidi-theme-font:minor-bidi; mso-ansi-language:SV; mso-fareast-language:EN-US;}div.WordSection1 {page:WordSection1;}
DOI: 10.6084/m9.figshare.14113469
title: Supplementary Material for: Postsurgical Pyoderma Gangrenosum in a Breast Cancer Patient: A Case Report and Literature Review

description: Pyoderma gangrenosum is a rare skin necrotizing disease that can arise on a site of surgical trauma. Its pathogenesis has recently been related to dysregulation of the immune system, with inflammatory bowel disease representing the most commonly underlying systemic conditions. Several authors have also reported an association with solid malignancies (especially gastrointestinal and breast cancer). We describe the case of a 39-year-old patient diagnosed with a locally advanced, triple-negative breast cancer who developed a pyoderma gangrenosum on the surgical wound after a CVC implant with systemic complications. As the diagnosis and management of postsurgical pyoderma gangrenosum can be challenging for clinicians, underlying conditions as autoimmune disease and solid tumors have to be considered in order to guide treatment.
DOI: 10.6084/m9.figshare.14113469.v1
title: Supplementary Material for: Postsurgical Pyoderma Gangrenosum in a Breast Cancer Patient: A Case Report and Literature Review

description: Pyoderma gangrenosum is a rare skin necrotizing disease that can arise on a site of surgical trauma. Its pathogenesis has recently been related to dysregulation of the immune system, with inflammatory bowel disease representing the most commonly underlying systemic conditions. Several authors have also reported an association with solid malignancies (especially gastrointestinal and breast cancer). We describe the case of a 39-year-old patient diagnosed with a locally advanced, triple-negative breast cancer who developed a pyoderma gangrenosum on the surgical wound after a CVC implant with systemic complications. As the diagnosis and management of postsurgical pyoderma gangrenosum can be challenging for clinicians, underlying conditions as autoimmune disease and solid tumors have to be considered in order to guide treatment.
DOI: 10.6084/m9.figshare.13578008
title: Metadata record for: The DecNef data collection, fMRI data from closed-loop decoded neurofeedback experiments

description: This dataset contains key characteristics about the data described in the Data Descriptor The DecNef data collection, fMRI data from closed-loop decoded neurofeedback experiments. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13370291
title: Metadata record for: OutFin, a Multi-Device and Multi-Modal Dataset for Outdoor Localization Based on the Fingerprinting Approach

description: This dataset contains key characteristics about the data described in the Data Descriptor OutFin, a Multi-Device and Multi-Modal Dataset for Outdoor Localization Based on the Fingerprinting Approach. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.13370291.v1
title: Metadata record for: OutFin, a Multi-Device and Multi-Modal Dataset for Outdoor Localization Based on the Fingerprinting Approach

description: This dataset contains key characteristics about the data described in the Data Descriptor OutFin, a Multi-Device and Multi-Modal Dataset for Outdoor Localization Based on the Fingerprinting Approach. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.21227/hymk-z894
title: 전력예측

description: 전력 예측
DOI: 10.5281/zenodo.4537606
title: Metrical variation in the Finnic runosong tradition: challenges and possibilities for a computational approach. (code + dataset)

description: This is the dataset and code used in the paper: M. Sarv, K. Kallio, M. Janicki, E. Mäkelä. Metrical variation in the Finnic runosong tradition: challenges and possibilities for a computational approach. Plotting Poetry Workshop, Tartu 2021.
DOI: 10.5281/zenodo.4537605
title: Metrical variation in the Finnic runosong tradition: challenges and possibilities for a computational approach. (code + dataset)

description: This is the dataset and code used in the paper: M. Sarv, K. Kallio, M. Janicki, E. Mäkelä. Metrical variation in the Finnic runosong tradition: challenges and possibilities for a computational approach. Plotting Poetry Workshop, Tartu 2021.
DOI: 10.6084/m9.figshare.14035028
title: Metadata record for: Worldwide continuous gap-filled MODIS land surface temperature dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Worldwide continuous gap-filled MODIS land surface temperature dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.14035028.v1
title: Metadata record for: Worldwide continuous gap-filled MODIS land surface temperature dataset

description: This dataset contains key characteristics about the data described in the Data Descriptor Worldwide continuous gap-filled MODIS land surface temperature dataset. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.17033/data.00000160
title: Amplification mode differs alongthe length of the mouse cochlea as revealed by connexin 26 deletion from specific gap junctions

description: The sharp frequency tuning and exquisite sensitivity of the mammalian cochlea is due to active forces delivered by outer hair cells (OHCs) to the cochlear partition. Force transmission is mediated and modulated by specialized cells, including Deiters’ cells (DCs) and pillar cells (PCs), coupled by gapjunctions composed of connexin 26 (Cx26) and Cx30. We created a mouse with conditional Cx26 knockout (Cx26 cKO) in DCs and PCs that did not influence sensory transduction, receptor-current-drivingvoltage, low-mid-frequency distortion-product-otoacoustic-emissions (DPOAEs), and passive basilar membrane (BM) responses. However, the Cx26 cKO desensitizes mid-high-frequency DPOAEs and active BM responses and sensitizes low-mid-frequency neural excitation. This functional segregation may indicate that the flexible, apical turn cochlear partition facilitates transfer of OHC displacements (isotonic forces) for cochlear amplification and neural excitation. DC and PC Cx26 expression is essential for cochlear amplification in the stiff basal turn, possibly through maintaining cochlear partition mechanical impedance, thereby ensuring effective transfer of OHC isometric forces.
description: Please see materials and methods
DOI: 10.17033/data.00000161
title: Emilin 2 promotes the mechanical gradient of the cochlear basilar membrane and resolution of frequencies in sound

description: The detection of different frequencies in sound is accomplished with remarkable precision by the basilar membrane (BM), an elastic, ribbon-like structure with graded stiffness along the cochlear spiral. Sound stimulates a wave of displacement along the BM with maximal magnitude at precise, frequency-specific locations to excite neural signals that carry frequency information to the brain. Perceptual frequency discrimination requires fine resolution of this frequency map, but little is known of the intrinsic molecular features that demarcate the place of response on the BM. To investigate the role of BM microarchitecture in frequency discrimination, we deleted extracellular matrix protein emilin 2, which disturbed the filamentous organization in the BM. Emilin2−/− mice displayed broadened mechanical and neural frequency tuning with multiple response peaks that are shifted to lower frequencies than normal. Thus, emilin 2 confers a stiffness gradient on the BM that is critical for accurate frequency resolution.
description: Please see Materials and Methods of paper
DOI: 10.17033/data.00000162
title: Aerodynamic imaging by mosquitoes inspires a surface detector for autonomous flying vehicles

description: Some flying animals use active sense to perceive and avoid obstacles. Nocturnal mosquitoes exhibit a behavioral response to divert away from surfaces when vision is unavailable indicating a short-range, mechanosensory collision avoidance mechanism. We suggest this behavior is mediated by perceiving modulations of their self-induced airflow patterns as they enter ground or wall effect. We use computational fluid dynamics simulations of low-altitude and near-wall flights, based on in vivo high-speed kinematic measurements, to quantify changes in the self-generated pressure and velocity cues at the sensitive, mechanosensory antennae. We validated the principle that encoding aerodynamic information can enable collision avoidance using a quadcopter with a sensory system inspired by the mosquito. Such low power sensing systems have major potential for future, safer, rotorcraft control systems.
description: See Materials and Methods of the paper
DOI: 10.6084/m9.figshare.14134181
title: Supplementary Material for: Hypertriglyceridemia Induced by Fluorouracil: A Novel Case Report

description: We had previously reported on S-1-induced hypertriglyceridemia. Here, we report fluorouracil-induced hypertriglyceridemia in a patient with capecitabine-induced hypertriglyceridemia and the corresponding therapeutic process. A woman in her forties who had experienced grade 3 hypertriglyceridemia due to oxaliplatin + capecitabine was administered fluorouracil ± oxaliplatin + levofolinate calcium + panitumumab; however, grade 4 hypertriglyceridemia occurred after the thirteenth administration. Bezafibrate normalized the elevation. Chemotherapy cessation resulted in its decrease to normal, and bezafibrate was stopped. Nine months after cessation, treatment with fluorouracil + irinotecan + levofolinate calcium + ramucirumab was initiated. After four cycles of treatment, her serum triglyceride levels increased again to grade 3, and then, fenofibrate was administered, resulting in a significant decrease to grade 1–2. Serum triglyceride levels significantly reduced after cessation of the prior fluorouracil-containing regimen, although its elevation was observed again following the latter treatment. Therefore, fluorouracil-induced hypertriglyceridemia was strongly speculated in this case. We have speculated that the most probable cause of tegafur and capecitabine-induced hypertriglyceridemia is fluorouracil or its metabolic enzymes since their end product is fluorouracil in the previous report. Results from this patient suggest that our supposition was correct. Fibrates administration, cessation of the treatment, and monitoring of serum triglyceride level was effective in this case as well as previous reports. Fluorouracil-induced hypertriglyceridemia is associated with the one caused by tegafur and capecitabine and presents the possibility of severe complications. Elucidation of its exact mechanism and epidemiological features is needed for better understanding.
DOI: 10.6084/m9.figshare.14134181.v1
title: Supplementary Material for: Hypertriglyceridemia Induced by Fluorouracil: A Novel Case Report

description: We had previously reported on S-1-induced hypertriglyceridemia. Here, we report fluorouracil-induced hypertriglyceridemia in a patient with capecitabine-induced hypertriglyceridemia and the corresponding therapeutic process. A woman in her forties who had experienced grade 3 hypertriglyceridemia due to oxaliplatin + capecitabine was administered fluorouracil ± oxaliplatin + levofolinate calcium + panitumumab; however, grade 4 hypertriglyceridemia occurred after the thirteenth administration. Bezafibrate normalized the elevation. Chemotherapy cessation resulted in its decrease to normal, and bezafibrate was stopped. Nine months after cessation, treatment with fluorouracil + irinotecan + levofolinate calcium + ramucirumab was initiated. After four cycles of treatment, her serum triglyceride levels increased again to grade 3, and then, fenofibrate was administered, resulting in a significant decrease to grade 1–2. Serum triglyceride levels significantly reduced after cessation of the prior fluorouracil-containing regimen, although its elevation was observed again following the latter treatment. Therefore, fluorouracil-induced hypertriglyceridemia was strongly speculated in this case. We have speculated that the most probable cause of tegafur and capecitabine-induced hypertriglyceridemia is fluorouracil or its metabolic enzymes since their end product is fluorouracil in the previous report. Results from this patient suggest that our supposition was correct. Fibrates administration, cessation of the treatment, and monitoring of serum triglyceride level was effective in this case as well as previous reports. Fluorouracil-induced hypertriglyceridemia is associated with the one caused by tegafur and capecitabine and presents the possibility of severe complications. Elucidation of its exact mechanism and epidemiological features is needed for better understanding.
DOI: 10.17033/data.00000163
title: Experimental heat treatment of silcrete from the Kalahari Desert (Botswana) and Western Cape (South Africa)

description: The dataset arises from the British Academy and Leverhulme Trust project `Heat treatment of silcrete raw materials: the implications of temperature-induced transformations for archaeological provenancing studies' (Small Research Grant SG142023). The study used an experimental approach to examine the impact of heat-treatment upon the major and trace element geochemistry of silcrete samples from Botswana and South Africa. The dataset includes the full geochemical dataset from the study. Details of the experimental approach are given in Schmidt et al. (2017) and the interpretation of the dataset in Nash et al. (2019). Links to both papers can be found in Related Resources.
description: Inductive-coupled plasma mass spectromtery (ICP-MS) and ICP-atomic emission spectroscopy. Full details are given in Schmidt et al (2017) and Nash et al. (2019) under Related Resources.
DOI: 10.5281/zenodo.4553878
title: jens-daniel-mueller/BloomSail: os-2020-120_submission

description: This release points to the code underlying the output submitted to the Copernicus journal Biogeosciences, where it handled as os-2020-120. Please note that data for this analysis are not stored in the Github repository, but were manually added to the archive at Zenodo.org.
DOI: 10.15128/r11j92g748d
title: Performance of Domain-Wall Encoding for Quantum Annealing [dataset]

description: Deposit contains dataset and Python code.
description: In this paper we experimentally test the performance of the recently proposed domain-wall en-coding of discrete variables from [Chancellor Quantum Sci. Technol. 4 045004] on Ising model fluxqubit quantum annealers. We compare this encoding with the traditional one-hot methods and findthat they outperform the one-hot encoding for three different problems at different sizes both of theproblem and of the variables. From these results we conclude that the domain-wall encoding yieldssuperior performance against a variety of metrics furthermore, we do not find a single metric bywhich one hot performs better. We even find that a 2000Q quantum annealer with a drastically lessconnected hardware graph but using the domain-wall encoding can outperform the next generationAdvantage processor if that processor uses one-hot encoding.
description: Remote quantum annealing experiments
DOI: 10.5281/zenodo.4569270
title: Puffaligner : A Fast, Efficient,and Accurate Aligner Based on the Pufferfish Index

description: Each list contains accessions of 100 bacterial genomes. The similar genomes are all strains from Ecoli.
DOI: 10.5281/zenodo.4569269
title: Puffaligner : A Fast, Efficient,and Accurate Aligner Based on the Pufferfish Index

description: Each list contains accessions of 100 bacterial genomes. The similar genomes are all strains from Ecoli.
DOI: 10.6084/m9.figshare.12130980.v79
title: MOOD Maps of Google community mobility change during the COVID-19 outbreak

description: The MOOD project (MOnitoring Outbreak events for Disease surveillance in a data science context. H2020) has geo-referenced the data Google has published as a series of PDF files presenting reports on national and subnational human mobility levels relative to a baseline data of late January 2020. The details and the PDF files can be found at https://www.google.com/covid19/mobility/.<br>More detail on these files can be found at https://www.moodspatialdata.com/humanmobilityforcovid19 <br>The first set of data were released on April 2 2020 and have been revised weekly since then. The maps now utilise the CSV data released by Google. Please note that the maps figures use a mean of the previous three days, while the Google PDFs use a single days data so there will be differences between values in our maps when compare to the Google PDFs.<br>The authors have extracted the majority of these data into a series of excel spreadsheets. Each worksheet provides the data for % change in numbers of records at various types of location categories illustrated by: retail and recreation, grocery and pharmacy, parks and beaches, transit stations, workplaces and residential (columns f to K). A second set of columns calculates the difference of each value from the mean values for each category (columns L to P) Columns A to E contain geographical details. Column Q contains the names used to link to a mapping file.There are separate worksheets for the date of the data from each dated release (e.g. 2903, 0504 etc.) and separate worksheets calculating the changes between specific dates.<br>A second spreadsheet has been added calculating the 3 day moving mean of each day from the 15th of February. Each day is referenced by the Gregorian calendar day count. So day 48 = Feb 17th.<br>The maps (for EU & Global) display these data. We provide 600 dpi jpegs of the Global (“WD”) and European (“EU”) mapped values at the latest date available, for each of the mobility categories: retail and recreation (“retrec”) , grocery and pharmacy (“grocphar”) , parks (“parks”) , transit stations (“transit”), residential (“resid”) and workplaces (“work”). We also provide maps of the changes from the previous week (“ch”).<br>All data extracting and subsequent processing have been carried out by ERGO (Environmental Research Group Oxford) on behalf of the MOOD H2020 project. Data will be periodically updated. Additional maps can be obtained on request to the authors.
DOI: 10.6084/m9.figshare.14134745
title: Supplementary Table S1: LA–ICP–MS zircon U–Pb data for the Ordovician–Silurian granitoids in southern Yunnan. Tracking Prototethyan assembly felsic magmatic suites in southern Yunnan (SW China): Evidence for an Early Ordovician–Early Silurian arc-back arc system

description: <b>Supplementary Table S1:</b> LA–ICP–MS zircon U–Pb data for the Ordovician–Silurian granitoids in southern Yunnan.
DOI: 10.6084/m9.figshare.14134755.v1
title: Landmarking data for mandible specimens from Ecomorphological diversification of squamates in the Cretaceous

description: Squamates (lizards and snakes) are highly successful modern vertebrates, with over 10 000 species. Squamates have a long history, dating back to at least 240 million years ago (Ma), and showing increasing species richness in the Late Cretaceous (84 Ma) and Early Paleogene (66–55 Ma). We confirm that the major expansion of dietary functional morphology happened before these diversifications, in the Mid-Cretaceous, 110–90 Ma. Until that time, squamates had relatively uniform tooth types, which then diversified substantially and ecomorphospace expanded to modern levels. This coincides with the Cretaceous Terrestrial Revolution, when angiosperms began to take over terrestrial ecosystems, providing new roles for plant-eating and pollinating insects, which were, in turn, new sources of food for herbivorous and insectivorous squamates. There was also an early Late Cretaceous (95–90 Ma) rise in jaw size disparity, driven by the diversification of marine squamates, particularly early mosasaurs. These events established modern levels of squamate feeding ecomorphology before the major steps in species diversification, confirming decoupling of diversity and disparity. In fact, squamate feeding ecomorphospace had been partially explored in the Late Jurassic and Early Cretaceous, and jaw innovation in Late Cretaceous squamates involved expansions at the extremes of morphospace.