cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pw48ua
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dolichophis andreanus (Werner, 1917)"
 ]
}

 The dataset includes 8 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004244-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/c88n8cvfwg.3
title: Biotecnologia CAPES/WoS - 2017 a 2022

description: Conjunto de dados levantados como parte da pesquisa de Iniciação Científica intitulada: "APLICAÇÕES E AVANÇOS DA BIOTECNOLOGIA: uma revisão bibliográfica".
DOI: 10.17632/f234tpmp4y.1
title: Features of acute COVID-19 associated with Post-Acute Sequelae of SARS-CoV-2 phenotypes: results from the IMPACC study

description: Post-acute sequelae of SARS-CoV-2 (PASC) is a significant public health concern. We describe Patient Reported Outcomes (PROs) on 590 participants prospectively assessed from hospital admission for COVID-19 through one year after discharge. Modeling identified 4 PRO clusters based on reported deficits (minimal, physical, mental/cognitive, and multidomain), supporting heterogenous clinical presentations in PASC, with sub-phenotypes associated with female sex and distinctive comorbidities. During the acute phase of disease, a higher respiratory SARS-CoV-2 viral burden and lower Receptor Binding Domain and Spike antibody titers were associated with both the physical predominant and the multidomain deficit clusters. A lower frequency of circulating B lymphocytes by mass cytometry (CyTOF) was observed in the multidomain deficit cluster. Circulating fibroblast growth factor 21 (FGF21) was significantly elevated in the mental/cognitive predominant and the multidomain clusters. Future efforts to link PASC to acute anti-viral host responses may help to better target treatment and prevention of PASC.
DOI: 10.15468/dl.b6xn8r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Barbastella barbastellus, Eptesicus isabellinus, Eptesicus serotinus, Hypsugo savii, Miniopterus schreibersii, Myotis alcathoe, Myotis bechsteinii, Myotis blythii, Myotis capaccinii, Myotis daubentonii, Myotis emarginatus, Myotis myotis, Myotis mystacinus, Myotis nattereri, Nyctalus lasiopterus, Nyctalus leisleri, Nyctalus noctula, Pipistrellus kuhlii, Pipistrellus maderensis, Pipistrellus nathusii, Pipistrellus pipistrellus, Pipistrellus pygmaeus, Plecotus auritus, Plecotus austriacus, Plecotus macrobullaris, Plecotus teneriffae, Rhinolophus euryale, Rhinolophus ferrumequinum, Rhinolophus hipposideros, Rhinolophus mehelyi, Tadarida teniotis)",
 "HasCoordinate is true",
 "Country is Spain"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004245-250117142028555/datasets/export for details.
DOI: 10.17632/td4ycvjh3r.2
title: Ge speciation in Quartz

description: Dataset for a manuscript on Ge speciation in quartz, including data for Figures 1-6 and Tables 1-4 in the main text, those in Figures S1-S5 and Table S2 in Supplementary Materials, and CRYSTAL theoretical calculations. This research uses combined EPR and synchrotron XAS experiments and first-principles theoretical calculations to demonstrate the presence of divalent Ge species in quartz for the first time.
DOI: 10.17632/3nfj692ns5.1
title: Oxygen isotopes as a pathfinder for metasomatism in mantle peridotites

description: Major element compositions (wt.%) and oxygen isotopic compositions (‰) of constituent minerals, as well as thermometry for co-existing mineral pairs in chromitites, dunites, and harzburgites from the Lycian ophiolite.
DOI: 10.17632/yzyn6rxksh.1
title: Supplementary data files regarding antimicrobial resistance in commensal E. coli from healthy Australian dairy cattle

description: Supplementary data files for the study titled “Epidemiology of antimicrobial resistance in commensal E. coli from dairy cattle on a Mediterranean pasture-based system of Australia: A cross-sectional study”, authored by M. Tree, T.J.G.M. Lam, S. McDougall, D.S. Beggs, I.D. Robertson, A.L. Barnes, A. Chopra, R. Ram, C.A. Stockman, T.C. Kent, J.W. Aleri. This study assessed antimicrobial resistance for 891 commensal E. coli isolated from healthy adult lactating cow and calf faeces collected from 26 Western Australian dairy farms. Supplementary Table 1 presents the STROBE-Vet checklist. Supplementary Table 2 presents the number and (percentage)1 of E. coli isolated from the faecal samples collected on each WA dairy farm. Supplementary Table 3 provides the AMR and virulence genes identified to be present within the genome of MDR E. coli isolated from the faecal samples collected on WA dairy farms.
DOI: 10.17632/xft6hmgmmj.1
title: Origin Data: Hydroxysafflor yellow A ameliorates alcohol-induced liver injury through PI3K/Akt and STAT3/ NF-κB signaling pathways

description: This dataset contains all the original data for this manuscript.
DOI: 10.17632/xft6hmgmmj.2
title: Origin Data: Hydroxysafflor yellow A ameliorates alcohol-induced liver injury through PI3K/Akt and STAT3/NF-κB signaling pathways

description: This dataset contains all the original data for this manuscript.
DOI: 10.17632/vd5473hvbr.1
title: ZNF143 is a transcriptional regulator of nuclear-encoded mitochondrial genes that acts independently of looping and CTCF

description: In Figure 1, we performed immunoblotting to confirm that ZFP143 could be depleted from the established mESCs. We conclude that ZFP143 could be depleted from the established mESCs within 2 hours of dTAG-V1 treatment. In Figures 5, S8 and S9 we aimed to investigate the effect of prolonged loss of ZFP143 on mESCs. We first assessed the morphology of mESCs colonies, quantified cell growth, analysed the cell cycle and performed an Annexin V apoptosis assay. The mESCs colonies of cells depleted of ZFP143 lose their dome-like structure and show a clear reduction in cell number. We did not observe a shift in cell cycle phase following ZFP143 depletion. However, we observed a decrease in EdU signal intensity for the S phase cells, suggesting lower EdU incorporation rates. The percentage of Annexin V-positive cells was slightly increased at later time points, but remained consistently low overall. Secondly, we visualised mitochondria in live cells and measured the mitochondrial membrane potential. In control mESCs, we observed elongated mitochondria and mitochondrial networks with high connectivity, whereas ZFP143-depleted cells show increased amounts of larger, circular mitochondria that have fewer interactions with each other. In addition, ZFP143 depletion resulted in a gradual loss of TMRE intensity, indicating that more depolarised mitochondria were present with longer dTAG-V1 treatment time. In Figures 6, S10 and S11 we investigated the role of ZFP143 in development and differentiation. We depleted ZFP143 in gastruloids, a model of early development, and analysed the growth dynamics of gastruloids in the presence and absence of ZFP143. We then tested whether the loss of ZFP143 had an effect on the mitochondrial membrane potential in gastruloids. We found that ZFP143-depleted gastruloids failed to elongate and produced a small spherical aggregate at the latest time points. We also observed an increase in cells with depolarised mitochondria in ZFP143-depleted gastruloids.
DOI: 10.17632/8k7696hwp5.1
title: Antagonistic activity of colombian yeasts against Salmonella Typhimurium and Escherichia coli O157

description: The antimicrobial activity of 52 yeast isolates was evaluated against the pathogenic bacteria Salmonella enterica subsp. enterica serovar Typhimurium and Escherichia coli O157. The hypothesis was that culture conditions of both the yeasts and the pathogenic bacteria will influence the antimicrobial activity of yeast. The yeasts were grown on modified yeast extract-malt agar (MYM) and modified yeast extract–peptone–glycerol agar (MYPG). While the enteropathogens were cultured on iron-deficient media (IDM) and Reasoner's 2A semisolid agar (R2A). At least three biological replicates consisting of 3 technical replicates were carried out for all treatments. 

Considering the results of the 31 yeast accessions displaying antimicrobial activity and their taxonomic identity, 8 isolates were selected for further experiments. The anti-biofilm activity was evaluated using polystyrene microplates. Cultures of enteropathogenic strains were prepared and mixed with lyophilized microbial extracts ((100 mg/mL) in the microplate wells. The stained biofilms were measured at 600 nm using a microtiter plate reader. Each treatment had eight replicates, and the experiment was repeated three times. 

To exhibit the presence of quorum quenching (QQ) compounds, Chromobacterium violaceum was used as biosensor. Violacein reduction was assessed by measuring optical density in liquid culture, following a protocol by Rajivgandhi et al. (2018). The supernatant was measured at 540 nm to compare violacein production with the control. Three biological replicates, each consisting of one technical replicate, were carried out.

The growth of yeast under varying temperatures, pH levels, and osmotic shock was assessed using 96-well microplates. Yeast cell suspensions were prepared and added to Sabouraud dextrose broth (SDB). For temperature tests, the plates were incubated at 4, 25, 30, 35, and 40°C. For pH tests, SDB was adjusted to pH levels from 3 to 9. The osmotic shock was evaluated by supplementing SDB with glucose to create 50% and 60% solutions. Growth was measured at 405 nm after 48 hours of incubation, with experiments conducted in a completely randomized design with four replicates per treatment and repeated three times.

To select the most competent yeasts for bioproduct development, data of all evaluated phenotypes were integrated into a composite index using a three-step process: (1) A univariate ANOVA was performed to evaluate yeast responses under specific conditions; (2) A factorial ANOVA was conducted to identify interactions and main effects of variables such as temperature, pH, and antimicrobial activity, followed by regression analysis to assess the impact of these conditions on yeast behavior; (3) An index was constructed using principal component analysis (PCA), selecting components that explained at least 70% of the total variance.
DOI: 10.17632/rbkchr9byr.1
title: Multication (from 2 to 7 cations) layered double hydroxides

description: Data for the article "Increasing the number of cations in layered double hydroxides: the more the merrier, or not?", including X-ray diffraction, FTIR and Raman spectroscopy, TEM pictures and elemental mapping.
DOI: 10.17632/tjw29ph975.1
title: Mode I fracture and fatigue behavior of thick adhesive joints with and without crack-arresting features

description: This dataset contains the results of mode-I fracture and fatigue experiments conducted on thick glass fiber-reinforced polymer composite-epoxy adhesive joints commonly used in wind turbine rotor blades. These joints comprise additively manufactured design elements specifically engineered to arrest cracks under quasi-static fracture and fatigue loading conditions. The dataset also includes the quasi-static tensile experimental data of composite materials and the crack-arresting features.
DOI: 10.17632/28hj2jdy6r.1
title: Data of The Shard Test and Nanoporomechanics Reverse the Classical Paradigm of Cement Hydration Being Contractive

description: For a century, the chemical hydration of cement has been considered a contractive process. This behavior occurs in the nanoscale hydration of cement particles with water, producing a smaller volume of hydration products. The cement hydration of the colloidal cement system generates a shell of hydration product surrounding the inner anhydrate particle. After the initial shell is created, the diffusion drives water into the inner anhydrate cement, and the internal growth of new hydration produces crystal growth pressure. 

A new experiment procedure shows chemical expansion above the nanoscale. Cement paste slabs that are 0.5 mm thick show volumetric expansion when exposed to full saturation by submerging them in water. In contrast, the identical cement paste slabs are 0.5 mm thick show volumetric contraction due to self-desiccation when submerged in paraffin oil. The topography of the concrete slabs submerged continuously in water or paraffin oil is measured using the Olympus 3D Laser Confocal Microscope as time evolves.

The Raw Data Confocal Microscoper (Not Trimmed) folder shows the following: STL files for the measured topography for five samples per each day.

The Trimmed Data Confocal Microscope folder shows the trimmed .STL samples for the five samples after using Meshmixer to remove the petri dish and the carbon tape from the specimens' surface topography. The point cloud .ply is saved from the trimmed .stl file.

The MatLab Code Volume Integration Scheme folder shows the volume calculation under the surface of the point cloud .ply. The MatLab Code divides the X and Y coordinates into infinitesimal grids. Then, it locates all the point cloud points inside the grid and calculates their average height in z direction [f (i,j)]. Finally, the volume is the sum of the infinitesimal prisms with delta_V = f(i,j) * delta_x * delta_y. 

The Analysis Summary folder shows the Excel spreadsheet with the summary of the measurement of both systems for the five specimens. The volume not presented in the sheet for individual days is due to an error in acquiring the laser raw data.
DOI: 10.17632/n2bjpsvsxn.1
title: LINF_210014900

description: hypoxanthine-guanine phosphoribosyltransferase | HGPRT; Leishmania infantum (strain JPCM5)
DOI: 10.17632/j3nf5ksgm6.1
title: Effects of phosphate on REY adsorption by goethite: Insights into REY enrichment and release in marine ferromanganese (oxyhydr)oxides during early diagenesis

description: All the data of XRD patterns and XAFS (including XANES and EXAFS) shown in the figures and supplementary figures is presented here.
DOI: 10.17632/dsgbmh3t22.1
title: LINF_210016000

description: Domain of unknown function (DUF4499); Leishmania infantum (strain JPCM5)
DOI: 10.17632/mxtmggsg5c.1
title: LINF_210016300

description: aspartyl-tRNA synthetase | mt-AspRS; Leishmania infantum (strain JPCM5)
DOI: 10.17632/p9hktwvtyy.1
title: Supplemental file: Comparative Effectiveness of Semaglutide in Routine Clinical Practice: Year-1 Results of SEPRA, a Randomized Pragmatic Clinical Trial

description: Supplemental file: Comparative Effectiveness of Semaglutide in Routine Clinical Practice: Year-1 Results of SEPRA, a Randomized Pragmatic Clinical Trial
DOI: 10.17632/b7hnj58k5r.1
title: Data for: On the capabilities of emerging nonintrusive methods to estimate bedform characteristics and bedload rates

description: This dataset contains input data and analysis results for the paper "On the capabilities of emerging nonintrusive methods to estimate bedform characteristics and bedload rates" scheduled to be published in Water Resources Research.
DOI: 10.15468/dl.sckrqs
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Colobus vellerosus (I.Geoffroy Saint-Hilaire, 1834)"
 ]
}

 The dataset includes 186 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004246-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/994227m9zy.1
title: Characteristics, treatment patterns, healthcare resource utilization and costs in patients with bullous pemphigoid: A retrospective analysis of US health insurance claims data

description: Supplementary material
DOI: 10.17632/87hwsh22hg.1
title: Effect of derivatization method (KOH and BF3) on fatty acid profile data of boiled Tetracarpidium conophorum, and egusi pudding oils

description: The files contain the raw and analyzed data of fatty acid profile from two oil (Tetracarpidium conophorum, and egusi pudding) obtained usin g two derivatization methods
DOI: 10.17632/kc3x84xjcb.1
title: LINF_210016800

description: histone H2A; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jhcxk9wjvw.1
title: LINF_210016600

description: Aminoacyl-tRNA editing domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/y684mkpcdz.1
title: Dataset for IWM SF article

description: Data collected for IWM StoryFutures project, and R script for data analyses.
DOI: 10.17632/kr2t7cty7n.1
title: Manganese cycling and transport in boreal estuaries impacted by acidic Mn-rich drainage

description: Raw data for all figures in the manuscript by Yu et al. submitted to Geochimica et Cosmochimica Acta as "Manganese cycling and transport in boreal estuaries impacted by acidic Mn-rich drainage".
DOI: 10.17632/47gx27hp5g.1
title: LINF_210017000

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/knpsd733ww.2
title: Data and code for the study on carbon leakage from aviation under the European Union Fit for 55 policies

description: The data and code of the method used in Wei, T. and S. Kallbekken (2024). "Carbon leakage from aviation under the European Union Fit for 55 policies." Transportation Research Part D: Transport and Environment 132: 104269.
DOI: 10.17632/cwf3c4y7pw.1
title: Results of Quantagonia's Hybrid Solver and D-Wave's LeapBQMHybrid Solver on the QOPTLib Optimization Benchmark

description: This dataset contains the instances and results presented in the following paper:

Eneko Osaba, Esther Villar-Rodriguez, Aitor Gomez-Tejedor, and Izaskun Oregi. Hybrid Quantum Solvers in Production: how to succeed in the NISQ era? arXiv preprint arXiv:2401.10302 (2024).

Abstract: Hybrid quantum computing is considered the present and the future within the field of quantum computing. Far from being a passing fad, this trend cannot be considered just a stopgap to address the limitations of NISQ-era devices. The foundations linking both computing paradigms will remain robust over time. Despite buoyant research activity, the challenges in hybrid computing are still countless, ranging from the proper characterization of current solvers to the establishment of appropriate methodologies for the design and fair evaluation of hybrid algorithms. The contribution of this work is twofold: first, we describe and categorize some of the most frequently used hybrid solvers, resorting to two different taxonomies recently published in the literature. Secondly, we put a special focus on two solvers that are currently deployed in real production and that have demonstrated to be near the real industry. These solvers are the LeapHybridBQMSampler contained in D-Wave's Hybrid Solver Service and Quantagonia's Hybrid Solver. We analyze the performance of both hybrid methods using as benchmarks four well-known combinatorial optimization problems: the Traveling Salesman Problem, Vehicle Routing Problem, Bin Packing Problem, and Maximum Cut Problem. Thanks to the contributions presented in this paper, the reader gains insight into the performance of those hybridization strategies nowadays in production and close to the industrial markets.
DOI: 10.17632/6rt42x6g4m.1
title: LDHU3_02.0360

description: Serine/threonine-protein kinase (NEK family); Leishmania donovani (HU3 strain)
DOI: 10.17632/hhbgfk54g5.1
title: The Italian North-South Divide in Perceived Dishonesty: A Matter of Trust?

description: The data come from a survey that took place at a mass-gathering cultural festival in late August 2017: “La Notte della Taranta” Festival, held each year since 1998 in the province of Lecce (a district of the Italian Southern Region “Apulia”) in late August (www.lanottedellataranta.it/en). The event is among the most important European folk festivals: Approximately 250,000 attendees on average per year have been registered since the 2012 edition, with this number increasing to more than 300,000 since the 2015 edition.
We carried out our survey in the 2017 edition of the Festival employing guided interviews addressed to a representative sample of attendees during (i) the last two minor concerts (August 23-24), (ii) the official rehearsal of the final concert (August 25), (iii) the final concert (August 26). The three Southern Italian villages where the four concerts were held (rehearsal and final concert being held on the same stage) are located within a 10-km radius in the province of Lecce (Sternatia, Martano, Melpignano). They are similar in terms of economic and social indicators. We only interviewed in the last four concerts of the Festival to minimize the time delay between the first and the last interview while profiting from the vast number of attendees in the final concert.
The same 18 interviewers per concert, both males and females, approached Festival attendees in random and independent order during each concert, from 8 pm until 1 am (5 hours) during the first three concerts and from 6 pm until 4 am (10 hours) during the last concert. Each interviewer conducted around 11 interviews during the first three concerts and around 22 during the final concert. Each interview lasted 7 minutes on average. Interviewers were distributed uniformly over the event duration to better capture population heterogeneity: Festival concerts usually have different types of attendees according to different timespan, e.g., mainly families at the beginning the concert and young-only audiences toward the end the concert. We made sure that no attendee was interviewed twice in the same concert or at two different concerts.
In the survey, we provide respondents with a definition of dishonesty identified as “Lack of integrity and honesty to the detriment of a third party and/or the citizenry”, and ask them to judge the level of dishonesty in several contexts, taking as reference the city where they live in. Based on this definition, perception of dishonesty is represented by three indicators: 1. perception of dishonesty in the public sector; 2. damage associated with dishonest behaviors; 3. probability of not having a lost wallet returned.
Other questionnaire items are socio-demographic variables on gender, age, education, occupation, and geographical variables on living in the North of Italy or abroad, as opposed to living in the South of Italy, and being an emigrant (from South to North of Italy). Generalized trust is measured by the World Value Survey question.
DOI: 10.17632/9g83ccr8wc.1
title: LINF_210018000

description: kinesin; Leishmania infantum (strain JPCM5)
DOI: 10.17632/f6hmk5bmgf.1
title: LDHU3_02.0430

description: Hypothetical protein - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/hypk245gkm.1
title: Fluoxetine reduces hypothermia in LPS-induced systemic inflammation

description: Thermograph images of rats treated with LPS
DOI: 10.17632/bbgbggg2nx.1
title: LDHU3_02.0420

description: UDP-N-acetylglucosamine transporter; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.u8vtya
title: Occurrence Download

description: A dataset containing 232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chromolaena odorata (L.) R.M.King & H.Rob."
 ]
}

 The dataset includes 232 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004248-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/67xkygmmzj.1
title: LDHU3_02.0370

description: ATP-binding cassette subfamily A - member 1 | ABCA1; Leishmania donovani (HU3 strain)