cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27823866.v1
title: Identification of <i>Pseudoperonospora cubensis</i> RxLR Effector Genes <i>via</i> Genome Sequencing

description: <i>Pseudoperonospora cubensis</i> is a significant phytopathogen causing downy mildew disease in cucurbit crops. Understanding the molecular mechanisms underlying the interaction between <i>P. cubensis</i> and its host is essential for developing effective disease management strategies. RxLR effectors, secreted by pathogens, play a crucial role in modulating host immunity. In this study, we sequenced the genome of the <i>P. cubensis</i> isolate CNU-OTH and identified RxLR effector genes using bioinformatics tools. A total of 45 RxLR effector genes were identified from the genome of <i>P. cubensis</i>. Cloning and functional characterization of these effectors were performed through transient expression assays in <i>Nicotiana benthamiana</i> leaves. Subcellular localization of selected effectors was determined using GFP-tagged constructs. Functional characterization revealed that while most effectors did not induce a hypersensitive response (HR), a subset showed either weak or strong necrosis. Furthermore, several effectors demonstrated the ability to suppress cell death induced by BAX and INF1. Subcellular localization analysis indicated that RxLR effectors exhibited fluorescence in the nucleus and plasma membrane of <i>N. benthamiana</i> cells, suggesting diverse roles in host-pathogen interactions. This study provides insights into the genetic diversity and functional characterization of RxLR effectors in <i>P. cubensis</i>. Understanding the role of these effectors in manipulating host immunity is critical for developing strategies to combat downy mildew disease in cucurbit crops. The findings contribute to the broader understanding of plant-pathogen interactions and may facilitate the development of disease-resistant crop varieties.
DOI: 10.6084/m9.figshare.14374355.v1
title: SSPE data

description: All data applicable to paper "A State Space Modeling Approach to Real-Time Phase Estimation". <br>
DOI: 10.6084/m9.figshare.26095648.v1
title: 03_Introduction_to_NumPy.zip

description: Data for Python Foundations lesson:https://github.com/OpenClimateScience/Python-Foundations
DOI: 10.6084/m9.figshare.28806530.v1
title: Transferred_Model_Himalaya.zip

description: The research focuses on developing a ground motion model for various ground motion parameters and uses the parameters to simulate ground motions.
DOI: 10.25381/cput.25367638.v1
title: Digital brand safety and viewability: A guide to protecting online brand reputation from a South African perspective

description: Ethical clearance number: 2021_FBMSREC_019This data has been used for the study of digital brand safety and viewability and provides a guide to protecting online brand reputation. The respondents are individuals from the South African media industry and the data provides their insights to the topics of brand safety and viewability based on their experiences in the industry.
DOI: 10.6084/m9.figshare.19953719.v1
title: LBANet_D1_310522_cylinder_wind

description: LBANet dataset D1 issued on 31/05/22. A dataset of 380.jpg files across 11 classes, some empty. Each .jpg contains the chromatic signature encoding a linear bifurcation buckling (LBA) eigenmode of a cylindrical shell under wind loading as defined by EN 1993-4-1 Annex C, under one of 11 classes of buckling eigenmode. Used to further train the LBANet convolutional neural network classifier together with the D0 dataset. See corresponding publication: https://doi.org/10.1016/j.advengsoft.2022.103257.
DOI: 10.6084/m9.figshare.19071734.v1
title: R code for processing 16S rRNA sequences

description: R code used in the manuscript entitled "Unraveling global and diazotrophic bacteriomes of boreal forest floor feather mosses and their environmental drivers at the ecosystem and at the plant scale in North America".<br>See file "Feather moss 16S rRNA raw sequences" to download the necessary sequences.
DOI: 10.6084/m9.figshare.23573958.v1
title: <strong>The Role of Problem-Based Learning Approach in Teaching and Learning Physics</strong>. <strong>A Systematic Literature Review</strong>

description: Analysis table of findings
DOI: 10.6084/m9.figshare.13227746.v1
title: Escherichia coli core genome coordinates on the UPEC ST131 reference genome

description: This entry contains the reference genome of the <i>Escherichia coli</i> UPEC ST131 strain and the genomic coordinates of the <i>Escherichia coli</i> species core-genome on this reference genome.
DOI: 10.6084/m9.figshare.28137902.v1
title: Nife2O4 Data Bank.docx

description: This study explores the synthesis of NiFe<sub>2</sub>O<sub>4</sub> nanorods using a hydrothermal method and their subsequent integration with rGO to form a composite material.
DOI: 10.6084/m9.figshare.8942342.v1
title: orthogroups.tsv

description: We clustered the genes into gene families of turbot and <i>D. rerio</i>, <i>G. aculeatus</i>,<i>O. latipes</i>,<i>T. rubripes</i>,<i>T. nigroviridis</i>,<i>C</i>. <i>Semilaevis</i>,<i>P. olivaceus </i>and<i>O. niloticus </i>using OrthoFinder2.
DOI: 10.6084/m9.figshare.7901165.v1
title: gVCF_HG01784

description: 1000 Genomes gVCF mapped to hs37d5 for HG01784. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.26005162.v1
title: Imaging results

description: Imaging results for the HCR FISH and TEM pictures
DOI: 10.6084/m9.figshare.12789950.v1
title: Script from 'Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)'

description: This zipfile contains all information to reproduce analysis of the paper 'Plant biodiversity assessment through pollen DNA metabarcoding in Natura 2000 habitats (Italian Alps)'.<br>It contains an R markdown including all the R-code of the analysis and the description of the datasets and a data folder containing the datasets.<br>Four datasets (MAP, TAX, OTU, MICRO) were used for the analysis in the folder data and ten datasets were used after exported from the initial datasets' analysis.<br>The MAP dataset includes in rows the samples and as columns information about the samples. A total of 18 sampling points were equipped with gravimetric Tauber traps, and pollen samples were collected over three different periods.<br>The OTU dataset includes as rows the Operational Taxonomic Units (OTUs), as columns the samples (corresponding to the ID column in MAP) and as cell values the number of reads.<br>The TAX dataset includes as rows the OTUs and as columns taxonomic information of the OTUs (Family, Genus, Species, Superdivision group) and other information (growth form of the taxa and their presence in the plant checklist of the area).<br>The MICRO dataset includes microscope counts of taxa (rows) for each sample of the period March-July 2015 (columns).<br>See the R markdown file for a detailed description of each dataset.<br><br>
DOI: 10.6084/m9.figshare.19145804.v1
title: Supplementary Material for: Topical Rosmarinus officinalis L. in Systemic Sclerosis-Related Raynaud’s Phenomenon: An Open-Label Pilot Study

description: Abstract Background: An effective and well tolerated topical treatment of Raynaud’s phenomenon is needed. The aim of this pilot study was to determine change in skin temperature and self-reported warmth perception from topical rosemary essential oil in patients with systemic sclerosis and secondary Raynaud’s phenomenon. Patients and Methods: Twelve patients with progressive systemic sclerosis and Raynaud’s phenomenon were consecutively enrolled in an open-label pilot study at a university outpatient rheumatology clinic. Each patient received an application of olive oil to both hands as a control and 3 hours later an application of a 10% essential oil of Rosmarinus officinalis L. Clinical severity and subjective warmth perception were assessed; skin temperature was measured by infrared thermography. Results: Skin temperature increased significantly after both olive oil and rosemary oil but differences between oils did not reach significance. Self-reported warmth perception increased after rosemary oil but not after olive oil. No adverse effects were observed. Conclusion: Topical rosemary essential oil increased warmth perception in patients with systemic sclerosis-related Raynaud’s phenomenon but did not increase finger skin temperature more than the olive oil control.
DOI: 10.6084/m9.figshare.24936927.v1
title: Rational design of dynamic fiber membrane for sustainable biofouling control

description: We've innovatively addressed membrane biofouling, introducing a facile approach for prolonged use of anti-biofouling agents. This led to the creation of the dynamic fiber membrane, with a sophisticated spatial structure. This smart membrane dynamically loads and releases a biofilm inhibitor D-tyrosine, establishing a multidimensional system that surpasses current anti-biofouling effectiveness. This advancement significantly enhances membrane anti-biofouling capabilities, offering a robust and sustainable solution for water treatment.
DOI: 10.6084/m9.figshare.6365201.v2
title: King and Van Doorslaer (2018)

description: Files associated with King and Van Doorslaer (2018). Building (viral) phylogenetic trees using a Maximum Likelihood approach. published in Current Protocols
DOI: 10.6084/m9.figshare.13072775.v1
title: Conhecimento etnobotânico de moradores do Sítio Histórico de Olinda, Patrimônio Natural e Cultural da Humanidade –– Ethnobotanical knowledge of Olinda’s historical site’s inhabitants, Natural and Cultural Heritage of Humanity –– Material Suplementar / Supplementary Material

description: <b>Espécies vegetais conhecidas e utilizadas pelos entrevistados no Sítio Histórico de Olinda (Pernambuco, Brasil), e área peri-urbana dessa cidade.</b>
DOI: 10.6084/m9.figshare.26755936.v1
title: CAM-chem Model Outputs used in "Aerosol Hygroscopicity over Southeast Asia during the NASA CAMP<sup>2</sup>Ex Campaign"

description: The Community Atmosphere Model coupled with chemistry (CAM-chem) is a component of the Community Earth System Model (CESM2.2) that represents the dynamics, physics, and chemistry of the atmosphere. The Multi-Scale Infrastructure for Chemistry and Aerosols (MUSICA) is a configuration of CAM-chem, it is a next generation unified infrastructure to study atmospheric chemistry at different horizontal grid resolutions. It is community-built, open-source, flexible, and computationally efficient.Our data includes different horizontal resolutions of CAM-chem and MUSICA version 0. The available regional refined grids were created by users for a variety of applications. We used a 1º base grid resolution (ne30) and a 0.25º (ne30x4) regionally refined output grid (which we label MUSICA) for East Asia that was developed at the NSF National Center for Atmospheric Research (NCAR)/Atmospheric Chemistry Observations and Modeling Laboratory (ACOM).
DOI: 10.6084/m9.figshare.21749540.v1
title: the responses of coo.xlsx

description: <strong>The Impact of Country of Origin on Consumer Purchase Decision of Luxury vs. Fast Fashion: Case of Saudi Female Consumers</strong> <br> research paper
DOI: 10.6084/m9.figshare.14776137.v1
title: MSU fruit tree research site maps and data

description: Montana State University fruit research sites are located in 10 orchards across the state in the following vicinities: Bozeman, Colstrip, Columbia Falls, Helena, Hinsdale, Lodgepole, Power, Shelby, Whitehall, Winston. Species planted include apple, pear, plum, and sour cherry. This file contains maps and data for each orchard.
DOI: 10.6084/m9.figshare.21780632.v1
title: Prisma checklist used for an integrative review

description: For the integrative review, the Prisma checklist for systematic review was used, and the manuscript adheres to it as closely as possible.
DOI: 10.6084/m9.figshare.24007515.v1
title: ISCRC dataset: <b>I</b>mmuno<b>S</b>core evaluation in <b>C</b>olo<b>R</b>ectal <b>C</b>ancer patients.

description: In the realm of cancer research, specifically focusing on colorectal carcinomas (CRC), a novel diagnostic test referred to as "Immunoscore" (IS) has emerged. This test relies on assessing the density of tumour-infiltrating lymphocytes (TILs), specifically CD3 and CD8, in both the central area of the tumour (CT) and its invasive margin (IM). Immunoscore holds promise as a potential prognostic factor. A retrospective descriptive study was conducted within the Pathology Department of Habib Thameur Hospital in Tunis. The study's aim was to evaluate the prognostic efficacy of IS for patients with CRC by means of a comprehensive survival analysis.This publication introduces the ISCRC dataset, which was meticulously compiled during the aforementioned study. The ISCRC dataset comprises digital slide images sourced from biopsies of 104 patients diagnosed with colorectal cancer. Using the Tissue Microarray (TMA) technique, an immunohistochemical investigation involving anti-CD3 and anti-CD8 markers was performed in regions designated as "Hot Spots" within the CT and IM. Each marker's percentage presence within its respective region was quantified. Subsequently, density classifications—"Low" or "High"—were assigned based on a predefined median percentage threshold. The IS was estimated utilizing a semi-quantitative method. The ISCRC dataset encompasses anonymized personal data, along with macroscopic and microscopic attributes.This openly accessible dataset is poised to play a pivotal role in advancing both computer-aided diagnosis and research endeavours pertaining to colorectal cancer.
DOI: 10.6084/m9.figshare.6121658.v1
title: table 3.xlsx

description: Multiple linear regression analysis of lumbar spinal stenosis patient data
DOI: 10.6084/m9.figshare.17213522.v4
title: Test EARTH2 n=890 age10-15y

description: Data presenting the results of the EARTH2 test by Straatemeier, M., van der Maas, H. L. J., & Jansen, B. R. J. (2008) conducted online among 890 students aged 10 to 15.The first sheet contains basic data about the survey. The second sheet contains the raw data.Results published in the article:<br>Jelinek J.A. (2024), Concept of the Earth’s shape in students 10-15 years old. <i>Review of Science, Mathematics and ICT Education</i>, <i>18</i>(1), s. 53-75. DOI: https://doi.org/10.26220/rev.4958<br>Jelinek J.A. (2023), Rozwój pojęcia kształtu Ziemi u Polskich uczniów w wieku od 10 do 15 lat. Forum pedagogiczne, 2(13), s. 193-206. DOI: http://doi.org/10.21697/fp.2023.2.1 (POLISH language)Contact to the author: jajelinek@aps.edu.pl<br>
DOI: 10.6084/m9.figshare.8078627.v2
title: Supplementary_Table_3_DE_hsa-miRNAs_and_hsa-sncRNAs.xlsx

description: Supplementary Table 3. A. List of significantly differentially expressed hsa-miRNAs from DESeq2 analysis. B. List of significantly differentially expressed hsa-sncRNAs from DESeq2 analysis. C. List of significantly differentially expressed hsa-miRNAs identified in all comparison involving the adenoma (top) or the carcinoma group (bottom).<br><br>
DOI: 10.6084/m9.figshare.20681203.v2
title: Modelling time-varying volatility using GARCH models

description: In our study, we used data from the NSE-NIFTY 50 (National Stock Exchange) indices. We collected data from two websites for the long run; covering most of the recession from January 1, 2008, to December 2, 2021. The different websites used to collect the data of Indices are www.nse.com and www.yahoofinance.com.
DOI: 10.6084/m9.figshare.27091774.v2
title: Covid19_Vaccination_PONE-D-24-17728.dta

description: The objective of this study was to analyze COVID-19 vaccine coverage and attitudes related to vaccine acceptability and rejection among migrants in transit through Mexico in six migrant shelters during the third and fourth waves of the pandemic and the most intense phase of the vaccination campaign from November 2021 to May 2022. All shelter users were invited; 2,355 completed the survey. Sociodemographic, migration, and health characteristics were crosschecked with vaccination status. To complement the survey, semi-structured interviews with migrants and decision-makers explored perspectives regarding vaccination. Most migrants (61.1%) had ≥ 1 COVID-19 vaccine doses. Factors associated with vaccination were education, country of prior residence, history of COVID-19 (OR = 1.370 [95% CI, 1.081 – 1.737]), and history of a COVID-19 test (OR = 4.790 [95% CI, 3.825 - 5.999]). Among unvaccinated respondents, 81.4% reported vaccination willingness. High acceptability may be explained by perceptions that the vaccine is “a protection against COVID-19 complications or death”, and a “requirement for movement between countries […].” Only 7.2% rejected the vaccine due to disinformation: “[…] what if that liquid contaminates me […]?” Future informational campaigns should address doubts about vaccine availability, safety, and travel requirements among unvaccinated migrants.<br>
DOI: 10.6084/m9.figshare.11478333.v1
title: Fig.1 single cell RNA-seq of ID4-eGFPBright and ID4-eGFPDim spermatogonia

description: This count table is related with the UMAP and single cell RNA-seq in Fig.1<br>
DOI: 10.6084/m9.figshare.25188527.v1
title: List of locations used for Opisina arenosella, with longtitude, latitude and sources

description: List of locations used for Opisina arenosella, with longtitude, latitude and sources
DOI: 10.6084/m9.figshare.28268546.v1
title: Green Supply Chains Papers indexed in Scopus (1999-2024)

description: Database with 1871 publications indexed in Scopus (1999–2024) on Green Supply Chains.
DOI: 10.6084/m9.figshare.3525557.v1
title: Appendix A. A table showing selected properties of each study site.

description: A table showing selected properties of each study site.
DOI: 10.6084/m9.figshare.11984433.v1
title: Low birth weight and its associated risk factors: health facility-based case-control study

description: This is the raw data that was collected from face to face interview with the research participants with the objective to identify the associated risk factors for low birth weight in Dang district of Nepal. The data was collected only after the written consent from the research participants.
DOI: 10.6084/m9.figshare.25013447.v1
title: Supplementary Material for: Temperament Traits in Pediatric Obsessive-Compulsive Disorder in Relation to Tourette Syndrome and Attention-Deficit Hyperactivity Disorder

description: Introduction: Pediatric obsessive-compulsive disorder (OCD) is concurrent with disorders characterized by disinhibition: attention-deficit hyperactivity disorder (ADHD) and Tourette Syndrome (TS). This study explores the temperament profile of complex OCD phenotypes.
Methods: A clinical registry recorded demographic data, psychiatric diagnoses, and temperament traits, including novelty seeking (exploratory behaviors), harm avoidance (fear of uncertainty), reward dependence (sentimentality), and persistence (perseverance). Temperament was accrued from the Junior Temperament and Character Inventory (JTCI). Participants were divided into 1) OCD only; 2) OCD+ADHD or TS; 3) OCD+ADHD+TS to compare temperament.
Results: 126 youth with OCD (61.9% male, 88.9% White) ages 6-18 years (12.68 ± 3.05) express the highest novelty seeking in the complex disinhibition disorder group: OCD+ADHD+TS, while persistence is lowest in the same group. Harm avoidance is increased in all groups with respect to reference controls, irrespective of concurrent ADHD or TS. For the OCD+ADHD+TS group, contamination and washing symptoms have higher novelty seeking (p &lt; 0.01), while counting and ordering have lower novelty seeking (p &lt; 0.05). Harm avoidance is increased with aggressive, somatic, and checking symptoms in OCD only (p &lt; 0.01), while persistence is increased with repeating and counting symptoms in the comorbid subtypes (OCD+ADHD or TS, OCD+ADHD+TS).
Discussion/Conclusion: The complex subtype, OCD+ADHD+TS, is associated with high novelty seeking and low persistence, while high harm avoidance is linked to pediatric OCD irrespective of ADHD or TS co-occurrence. In sum, disorders linked to disinhibition in pediatric OCD confer a unique temperament profile, further refining complex phenotypes of pediatric OCD for future research.
DOI: 10.6084/m9.figshare.27297393.v1
title: Data for Influence of land use and landscape pattern on legacy nitrogen pollution in a typical watershed in eastern China

description: Data for Influence of land use and landscape pattern on legacy nitrogen pollution in a typical watershed in eastern China
DOI: 10.6084/m9.figshare.26425510.v1
title: Supplementary Material for: Bridging the gap between intuition and theory: a comparison of different approaches to implementation strategy development for improving Lynch syndrome detection

description: Introduction: Despite growing calls for the explicit application of theory when designing behaviour change interventions, limited empirical evidence exists regarding the effectiveness of these methods compared to non-theoretical approaches. A cluster randomized controlled trial (Hide and Seek Project – HaSP) tested two implementation approaches for improving hereditary cancer referral practices with one key distinction: implementation strategies were designed based explicitly on psychological theory, or based on stakeholder intuition. This study presents the detailed methods and resources used to facilitate this comparison, whilst examining the strategies generated through both approaches. 
Methods: Across seven Australian hospitals, clinical stakeholders attended focus-groups to co-design site-specific strategies for improving Lynch syndrome referral. Co-design methods differed according to trial arm. Implementation strategy content was examined, with intuitively-derived strategies retrospectively coded to determine theoretical alignment. 
Results: Fifty-one strategies were proposed across all sites (theory-based arm = 32, intuition-based arm = 19). Overall, nine Behaviour Change Technique (BCT) categories were used on 77 occasions. In the theory-based trial arm, eight BCT categories were identified on 53 occasions; versus five BCT categories on 24 occasions in the intuition-based arm. BCT categories were largely similar across both arms. After retrospectively coding intuitively-derived strategies, 42% contained mechanistic links, thereby demonstrating theoretical alignment. 
Conclusion: Methods facilitated robust comparison of theoretical and intuitive approaches to implementation strategy design. Recognising the known benefits of theory for enhancing scientific learning, applying these methods on a larger scale may provide definitive evidence about the comparative effectiveness of theoretical approaches.
DOI: 10.6084/m9.figshare.16383887.v1
title: Complex neurovascular system in the dentary of <i>Tyrannosaurus</i>

description: The morphology of the neurovascular canal in the jaw has been analysed in several fossil reptiles, including theropod dinosaurs. However, the details of the neurovascular canal in the dentary of theropods have not been fully elucidated. In this study, we described the well-preserved dentary of <i>Tyrannosaurus rex</i>, analysed the morphology of the neurovascular canal in the dentary using computed tomography techniques, and compared its distribution pattern with other dinosaurs and extant crocodiles. The results show that the neurovascular canal in the dentary of <i>Tyrannosaurus</i> exhibits a rather complex branching amongst the sampled dinosaurs, and that the complexity is comparable to that of extant crocodilians. The complexity of the canal branching is likely related to the high tactile sensitivity of the dentary, suggesting that the jaw tip of <i>Tyrannosaurus</i> may have played an essential role as a sensitive tactile sensor.
DOI: 10.6084/m9.figshare.23524287.v1
title: test excel table

description: Test. Describe data here