cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c52v2cm80
title: MassIVE MSV000093421 - Secondary Backup of Full "6.27.19_Norman&BF_Urbanization" Project C18 Files
title: Creating a second backup of files from the shared human fecal metabolome project, to ensure this account is compliant with GNPS fair use policies. Since accounts are unable to add files to existing massIVE datasets while non-compliant, I am uploading the extra C18 files here to a separate private dataset.
DOI: 10.6073/pasta/82a39ab7516d70904ddf23f4f417e84b
title: Regeneration after Hurricane Hugo woody species &gt; 1m tall and below 3m: percent cover (9 ha grid, El Verde)

description: Purpose was to document vegetation damage and recovery following Hurricane Hugo. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25345/c5z60cc55
title: MassIVE MSV000093422 - Secondary Backup of Full "6.27.19_Norman&BF_Urbanization" Project C18 Files
title: Creating a second backup of files from the shared human fecal metabolome project, to ensure this account is compliant with GNPS fair use policies. Since accounts are unable to add files to existing massIVE datasets while non-compliant, I am uploading the extra C18 files here to a separate private dataset.
DOI: 10.6073/pasta/4fc8d777d99bc7d2dc01b56cebfa11bd
title: Regeneration after Hurricane Hugo woody species greater than 1cm tall (9ha grid, El Verde)(Wood fall from Hurricane Hugo 9Ha Grid)

description: The purpose of this data set is to document vegetation damage and recovery following Hurricane Hugo, a borderline category 3-4 hurricane with winds from 130 to 160mph (110kts) and a pressure of 945 to 946.1 mb, which hit Puerto Rico in September 18th, 1989. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.6084/m9.figshare.24584826
title: Data for "Characterizing oxidation, thickness, and composition of metallic glass thin films with combined electron probe microanalysis and X-ray photoelectron spectroscopy"

description: Metallic glass thin films (MGTFs) are a recently developed class of alloy coatings with potential applications ranging from biomedical devices to electrical components. Their tribological performance in service conditions is dictated by MGTF bulk composition but can be limited by the native oxide surface that inevitably forms upon exposure to atmosphere. Surface oxidation, thickness, and composition of ZrCuNiAl MGTFs were characterized using a combination of X-ray photoelectron microscopy (XPS) and electron probe microanalysis (EPMA). MGTF samples with nominal thicknesses of 50, 500, and 1500 nm were sputtered onto Si and SiN wafer substrates within high vacuum deposition chamber and their amorphicity was confirmed by X-ray diffraction. XPS depth profiling identified the thin film composition and showed that the surface oxide was dominated by a mixed layer of mostly ZrO<sub>2</sub> and a little oxidized Al. EPMA X-ray intensities were acquired as a function of beam energy to excite characteristic X-rays from different depths of the MGTFs and reconstructed using open-source thin film analysis software <i>BadgerFilm</i>, to determine the composition and thickness of sample layers. EPMA results constrain the composition to be Zr<sub>54</sub>Cu<sub>29</sub>Al<sub>10</sub>N<sub>7</sub> within 0.7 at. % variation and total thicknesses to be 49, 470, and 1546 nm. Using the oxide composition identified from XPS depth profiling as an input for <i>BadgerFilm</i> analysis, EPMA results indicate the surface oxidation layer on each of the thin film samples was 6.5 ± 1.1 nm thick and uniform across a 0.25 mm region of the film.
DOI: 10.5281/zenodo.10150600
title: FuseCap-CC12-captions

description: CC12 captions produced by FuseCap.
DOI: 10.25345/c5td9nk2z
title: MassIVE MSV000093423 - Secondary Backup of Full "6.27.19_Norman&BF_Urbanization" Project HILIC Files
title: Creating a second backup of files from the shared human fecal metabolome project, to ensure this account is compliant with GNPS fair use policies. Since accounts are unable to add files to existing massIVE datasets while non-compliant, I am uploading the extra HILIC files here to a separate private dataset.
DOI: 10.6073/pasta/1af841aacc89adc4c1e711c4b632994b
title: Regeneration after Hurricane Hugo woody species more than 1m tall (9ha grid, El Verde) (Large 9Ha Grid)

description: The purpose of this data set is to document vegetation damage and recovery following Hurricane Hugo, a borderline category 3-4 hurricane with winds from 130 to 160mph (110kts) and a pressure of 945 to 946.1 mb, which hit Puerto Rico in September 18th, 1989. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.6073/pasta/d82ea3f7d17f8fdc7868415032738fe8
title: Regeneration after Hurricane Hugo, woody species &gt; 10 cm tall (9Ha grid, El Verde) (9Ha Plots Small Data Set)

description: The purpose of this data set is to document vegetation damage and recovery following Hurricane Hugo, a borderline category 3-4 hurricane with winds from 130 to 160mph (110kts) and a pressure of 945 to 946.1 mb, which hit Puerto Rico in September 18th, 1989 Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.25345/c5pn8xr9p
title: MassIVE MSV000093424 - Veneer is a webtool for rapid, standardized, and transparent interpretation, annotation, and reporting of mammalian cell surface glycoprotein capture data
title: Microscale cell surface capture of RPMI 1788 cells
DOI: 10.5281/zenodo.10150599
title: FuseCap-CC12-captions

description: CC12 captions produced by FuseCap.
DOI: 10.25573/data.10042421.v20
title: Barro Colorado Island, AVA tower_Air Temperature

description: Barro Colorado Island, AVA tower.Air temperature, electronic sensor, interval max/min/avg<br>Established in Mar, 2011 as part of the ForestGEO Tropical Ecology, Assessment and Monitoring (TEAM) project.<br>The original tower was Located near the center of the island at the north west corner of the 50ha plot (9.1568°, -79.8486°).<br>In 2018 this tower was struck by a tree fall and rendered unusable.<br>In Feb. 2019 a new 45m tower was build close by (9.1568°, -79.8486°). <br>
DOI: 10.25919/ajr3-zc57
title: Parkes observations for project P1054 semester 2023OCTS_03

description: With this proposal we ask time to continue our timing follow-up campaign of pulsars discovered with the MeerKAT telescope. Twentyfive sources have been discovered in targeted observations of Fermi unidentified point sources, one in association with a Supernova Remnant, 13 in the Magellanic Clouds, 72 in Globular Clusters and 78 in a survey of the Galactic plane. A large fraction of the new discoveries are recycled pulsars (including at least one double neutron star system and several 'spider' binaries), or young pulsars. Timing observations have an essential role in exploiting the full potential of any pulsar discovery, allowing the precise measurement of rotational, astrometric and orbital parameters which, in turn, give us powerful tools to improve our understanding of the physics in extreme environments as well as of the population of neutron stars as a whole. The UWL receiver of the Parkes telescope is a sensitive, versatile instrument that is allowing us to successfully time these new sources, in the bright-end of TRAPUM discoveries.
DOI: 10.6073/pasta/4b8d90540a436ac1465a0f2c573a31fe
title: Landslide Revegetation Canopy Measurements & Cover Estimates

description: The purpose of this data set is to document recovery of vegetation in new landslides in the Luquillo Experimental Forest (LEF) Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5281/zenodo.10094991
title: Dataset used in the publication entitled "Multi-Point Method using Effective Demodulation and Decomposition Techniques allowing Identification of Disturbing Loads in Power Grids"

description: Dataset obtained from experimental research carried out in the prepared laboratory setup and information on the performed numerical simulation studies. Based on the dataset, the proposed new method of identification of sources of voltage fluctuation has been validated in the publication: Kuwałek P., Wiczyński G., Multi-Point Method using Effective Demodulation and Decomposition Techniques allowing Identification of Disturbing Loads in Power Grids. The description of the prepared laboratory setup is presented in this publication. The research results are part of the work under the project entitled "Voltage fluctuation diagnostic focused on identification and localization disturbing loads in power grids" funded by the National Science Centre, Poland - 2021/41/N/ST7/00397.
description: This research was funded in whole or in part by National Science Centre, Poland – 2021/41/N/ST7/00397. For the purpose of Open Access, the author has applied a CC–BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission
DOI: 10.5281/zenodo.10094992
title: Dataset used in the publication entitled "Multi-Point Method using Effective Demodulation and Decomposition Techniques allowing Identification of Disturbing Loads in Power Grids"

description: Dataset obtained from experimental research carried out in the prepared laboratory setup and information on the performed numerical simulation studies. Based on the dataset, the proposed new method of identification of sources of voltage fluctuation has been validated in the publication: Kuwałek P., Wiczyński G., Multi-Point Method using Effective Demodulation and Decomposition Techniques allowing Identification of Disturbing Loads in Power Grids. The description of the prepared laboratory setup is presented in this publication. The research results are part of the work under the project entitled "Voltage fluctuation diagnostic focused on identification and localization disturbing loads in power grids" funded by the National Science Centre, Poland - 2021/41/N/ST7/00397.
description: This research was funded in whole or in part by National Science Centre, Poland – 2021/41/N/ST7/00397. For the purpose of Open Access, the author has applied a CC–BY public copyright licence to any Author Accepted Manuscript (AAM) version arising from this submission
DOI: 10.26275/v62f-qd4v
title: Hetionet

description: An integrative disease network
DOI: 10.6073/pasta/13975c8f7e2564c6b8a041e6b12c18af
title: Meteorological data from towers (pre-Hugo) or rooftop (post Hugo) at El Verde

description: The meteorological sensors were installed above the flat concrete roof of El Verde Field Station (elevation: 350 m asl). The building is in an approx. 0.3 ha clearing in a forest approx. 20 m tall. Data were processed and temporarily stored in a Campbell 21X data logger on-site. The station was initiated after the September 1989 hurricane. As this station was installed 3 meters above a concrete rooftop in a forest clearing, dry air temperatures during daylight hours are higher than those that would be measured in the adjacent forest. The USGS maintains a nearby (100 m away) station on a 20 m tower (since 1992). An additional station for temperature and humidity measurements in the forest understory was added in 1997. Additional measurements of daily rainfall and maximum and minimum air temperatures for this site since 1975 exist on separate files. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5519/qd.n33wcfzy
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (29 records)
DOI: 10.34740/kaggle/dsv/6991366
title: Balochi Language to English Translation Dataset
DOI: 10.17909/3rz0-0e55
title: JWST Mid-infrared Spectroscopy Resolves Gas, Dust, and Ice
DOI: 10.6073/pasta/e1a2b7fbded4ee6a03a1e0691e72f789
title: Bisley 40 X 40 grid vegetation and site characteristics

description: Relationships between landforms, soil nutrients, forest structure, and the relative importance of different disturbances were quantified in two subtropical wet steepland watersheds in Pueno Rico. Ridges had fewer landslides and treefall gaps, more above-ground biomass, older aged stands, and greater species richness than other landscape positions. Ridge soils had relatively low quantities of exchangeable bases but high soil organic matter, acidity and exchangeable iron. Valley sites had higher frequencies of disturbance, less biomass, younger aged stands, lower species richness and soils with more exchangeable bases. Soil N, P, and K were distributed relatively independently of geomorphic setting, but were significantly related to the composition and age of vegetation. On a watershed basis, hurricanes were the dominant natural disturbance in the turnover of individuals, biomass, and forest canopy. However. turnover by the mortality of individuals that die without creating canopy openings was faster than the turnover by any natural disturbance. Only in riparian areas was forest turnover by treefall gaps faster than turnover by hurricanes. The same downslope mass transfer that links soil forming processes across the landscape also influences the distribution of landslides, treefall gaps, and the structure and composition of the forest. One consequence of these interactions is that the greatest aboveground biomass occurs on ridges where the soil nutrient pools are the smallest. Geomorphic stability, edaphic conditions, and biotic adaptations apparently override the importance of spatial variations in soil nutrients in the accumulation of above-ground biomass at this site. Support for this work was provided by grants BSR-8811902, DEB-9411973, DEB-9705814 , DEB-0080538, DEB-0218039 , DEB-0620910 , DEB-1239764, DEB-1546686, and DEB-1831952 from the National Science Foundation to the University of Puerto Rico as part of the Luquillo Long-Term Ecological Research Program. Additional support provided by the University of Puerto Rico and the International Institute of Tropical Forestry, USDA Forest Service.
DOI: 10.5281/zenodo.10150875
title: Fluorescence decay kinetics at 516nm
DOI: 10.5281/zenodo.10150874
title: Fluorescence decay kinetics at 516nm
DOI: 10.25345/c5jw86z4f
title: MassIVE MSV000093425 - In vivo mapping of protein-protein interactions of schizophrenia risk factors generates an interconnected disease network.
title: Genetic analyses of Schizophrenia (SCZ) patients have identified thousands of risk factors. In silico protein-protein interaction (PPI) network analysis has provided strong evidence that disrupted PPI networks underlie SCZ pathogenesis. In this study, we performed in vivo PPI analysis of several SCZ risk factors in the rodent brain. Using endogenous antibody immunoprecipitations coupled to mass spectrometry (MS) analysis, we constructed a SCZ network comprising 1612 unique PPI with a 5% FDR. Over 90% of the PPI were novel, reflecting the lack of previous PPI MS studies in brain tissue. Our SCZ PPI network was enriched with known SCZ risk factors, which supports the hypothesis that an accumulation of disturbances in selected PPI networks underlies SCZ. We used Stable Isotope Labeling in Mammals (SILAM) to quantitate phencyclidine (PCP) perturbations in the SCZ network and found that PCP weakened most PPI but also led to some enhanced or new PPI. These findings demonstrate that quantitating PPI in perturbed biological states can reveal alterations to network biology.
DOI: 10.5281/zenodo.10150954
title: Fluorescence decay kinetics at 610nm
DOI: 10.5281/zenodo.10150953
title: Fluorescence decay kinetics at 610nm
DOI: 10.5281/zenodo.10150880
title: A whole-cortex probabilistic diffusion tractography connectome

description: This is a collection of the results data for the eNeuro article of the same name, https://doi.org/10.1523/ENEURO.0416-20.2020. Please cite this publication when using these data. Files with the .mat extension are matlab v7.3 files. The raw data from which these data were derived are available from https://db.humanconnectome.org and https://f-tract.eu.
description: This work was supported by NIMH 1RF1MH117155-01and 5T32MH020002-19, NINDS 1R01NS109553-01A1, and ONR 00014-16-4761-2415. Data were provided, in part, by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University. Data were provided, in part, by the Functional Brain Tractography Project, funded by the European Research Council. We thank Adam Niese and the San Diego Supercomputer Center for providing technical support.
DOI: 10.5281/zenodo.3928847
title: A whole-cortex probabilistic diffusion tractography connectome

description: This is a collection of the results data for the eNeuro article of the same name, https://doi.org/10.1523/ENEURO.0416-20.2020. Please cite this publication when using these data. Files with the .mat extension are matlab v7.3 files. The raw data from which these data were derived are available from https://db.humanconnectome.org and https://f-tract.eu.
description: This work was supported by NIMH 1RF1MH117155-01and 5T32MH020002-19, NINDS 1R01NS109553-01A1, and ONR 00014-16-4761-2415. Data were provided, in part, by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University. Data were provided, in part, by the Functional Brain Tractography Project, funded by the European Research Council. We thank Adam Niese and the San Diego Supercomputer Center for providing technical support.
DOI: 10.5281/zenodo.3928848
title: A whole-cortex probabilistic diffusion tractography connectome

description: This is a collection of the results data for the bioRxiv preprint of the same name: https://doi.org/10.1101/2020.06.22.166041. Files with the .mat extension are matlab v7.3 files. The raw data from which these data were derived is available from https://db.humanconnectome.org.
description: This work was supported by NIMH 1RF1MH117155-01and 5T32MH020002-19, NINDS 1R01NS109553-01A1, and ONR 00014-16-4761-2415. Data were provided, in part, by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University.We are grateful to Adam Niese and the San Diego SupercomputerCenter for providing technical support.
DOI: 10.5281/zenodo.4060485
title: A whole-cortex probabilistic diffusion tractography connectome

description: This is a collection of the results data for the eNeuro article of the same name, https://doi.org/10.1523/ENEURO.0416-20.2020. Please cite this publication when using these data. Files with the .mat extension are matlab v7.3 files. The raw data from which these data were derived are available from https://db.humanconnectome.org and https://f-tract.eu.
description: This work was supported by NIMH 1RF1MH117155-01and 5T32MH020002-19, NINDS 1R01NS109553-01A1, and ONR 00014-16-4761-2415. Data were provided, in part, by the Human Connectome Project, WU-Minn Consortium (Principal Investigators: David Van Essen and Kamil Ugurbil; 1U54MH091657) funded by the 16 NIH Institutes and Centers that support the NIH Blueprint for Neuroscience Research; and by the McDonnell Center for Systems Neuroscience at Washington University. Data were provided, in part, by the Functional Brain Tractography Project, funded by the European Research Council. We thank Adam Niese and the San Diego Supercomputer Center for providing technical support.
DOI: 10.25838/d5p-53
title: MD simulation data for: "Molecular Mechanisms Underlying Medium-Chain Free Fatty Acid-regulated Activity of the Phospholipase PlaF from Pseudomonas aeruginosa"

description: PlaF is a membrane-bound phospholipase A1 from P. aeruginosa that is involved in remodeling membrane glycerophospholipids (GPLs) and modulation of virulence-associated signaling and metabolic pathways. Previously, we identified the role of medium-chain free fatty acids (FFA) in inhibiting PlaF activity and promoting homodimerization, yet the underlying molecular mechanism remained elusive. Here, we used unbiased and biased molecular dynamics simulations and free energy computations to assess how PlaF interacts with FFAs localized in the water milieu surrounding the bilayer or within the bilayer, and how these interactions regulate PlaF activity. Medium-chain FFAs localized in the upper bilayer leaflet can stabilize inactive dimeric PlaF, likely through interactions with charged surface residues as experimentally validated. Potential of mean force (PMF) computations indicate that membrane-bound FFAs may facilitate the activation of monomeric PlaF by lowering the activation barrier of changing into a tilted, active configuration. We estimated that the coupled equilibria of PlaF monomerization-dimerization and tilting at the physiological concentration of PlaF lead to the majority of PlaF forming inactive dimers when in a cell membrane loaded with decanoic acid (C10). This is in agreement with a suggested in vivo product feedback loop and GC-MS profiling results indicating that PlaF catalyzes the release of C10 from P. aeruginosa membranes. Additionally, we found that C10 in the water milieu can access the catalytic site of active monomeric PlaF, contributing to the competitive component of C10-mediated PlaF inhibition. Our study provides mechanistic insights into how medium-chain FFA may regulate the activity of PlaF, a potential bacterial drug target.
DOI: 10.3886/e190042v1-143124
title: dataset-nurses-js

description: This data set has responses from 400 nurses