cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/ar/dpfhzd
title: PAN-00068771 - symmetrical buckle with simple integral bar, round

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00068771&lt;/p&gt;
description: Modified: 2025-10-28T12:19:22+01:00
DOI: 10.5281/zenodo.17857562
title: Using CRISPR/Cas9 to investigate the developmental roles of Fcho, Pgm3, and Nckap1 in Ciona, Part 2 raw images and data

description: Raw images and scoring data associated with the publication "Using CRISPR/Cas9 to investigate the developmental roles of Fcho, Pgm3, and Nckap1 in Ciona, Part 2: testing their roles in notochord intercalation and convergent extension"
DOI: 10.5281/zenodo.17857561
title: Using CRISPR/Cas9 to investigate the developmental roles of Fcho, Pgm3, and Nckap1 in Ciona, Part 2 raw images and data

description: Raw images and scoring data associated with the publication "Using CRISPR/Cas9 to investigate the developmental roles of Fcho, Pgm3, and Nckap1 in Ciona, Part 2: testing their roles in notochord intercalation and convergent extension"
DOI: 10.5281/zenodo.17868424
title: Supporting Data for: "Observation of a Stripe/nematic Phase of Composite Fermions"

description: Data used for the creation of figures in "Observation of a Stripe/nematic Phase of Composite Fermions".
DOI: 10.5281/zenodo.17868425
title: Supporting Data for: "Observation of a Stripe/nematic Phase of Composite Fermions"

description: Data used for the creation of figures in "Observation of a Stripe/nematic Phase of Composite Fermions".
DOI: 10.15468/dl.f4dne4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((101.14 1.407183, 101.069716 1.401615, 101.001164 1.385048, 100.936031 1.357891, 100.875924 1.320812, 100.822321 1.274725, 100.776543 1.220765, 100.739717 1.160262, 100.712749 1.094704, 100.696302 1.025708, 100.69078 0.95497, 100.69632 0.884235, 100.712783 0.815242, 100.739764 0.749691, 100.776599 0.689195, 100.82238 0.6352449999999999, 100.87598 0.589167, 100.936079 0.552096, 101.001198 0.524945, 101.069734 0.508383, 101.14 0.502816, 101.210266 0.508383, 101.278802 0.524945, 101.343921 0.552096, 101.40402 0.589167, 101.45762 0.6352449999999999, 101.503401 0.689195, 101.540236 0.749691, 101.567217 0.815242, 101.58368 0.884235, 101.58922 0.95497, 101.583698 1.025708, 101.567251 1.094704, 101.540283 1.160262, 101.503457 1.220765, 101.457679 1.274725, 101.404076 1.320812, 101.343969 1.357891, 101.278836 1.385048, 101.210284 1.401615, 101.14 1.407183))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041091-251120083545085/datasets/export for details.
DOI: 10.60964/rnd-rtyw-9w81
title: Investigating motor fatigue using force, EMG, and kinematic data

description: This study is a within-subject design comprising 30 subjects. Each subject performed three rounds of: Maximum Voluntary Contraction (MVC) 3×, Fatiguing Task (FT), MVC 1×, BORG-CR10, Assessment Task (AT), and a recovery period. The only difference between the three rounds was the level of force intensity (5%, 50% or 75% of MVC) during the FT. Electromyography (EMG) of the right and left flexor carpi radialis (FCR) and extensor carpi radialis longus (ECR) muscles was acquired using bipolar configuration with a TMSi Porti7 recorder (Twente Medical Systems International B.V., Oldenzaal, The Netherlands). Small adhesive disposable electrodes with a contact area of 4.5 cm2 (Kendall H124SG; Cardinal Health, Dublin, OH, USA) were used, and placed in a bipolar setup with two electrodes placed next to each other on the bulk of the muscle belly at a fixed distance of 24 mm between the centres of the electrodes. A common grounding electrode was placed on the ulnar styloid process. EMG signals were recorded in raw format at a sampling rate of 2048 Hz and were routed through LSL and LabRecorder.Force data were recorded using a hand dynamometer (Biopac Systems Inc., Aero Camino Goleta, CA, USA) and custom code (https://github.com/cathazi/task-Fatigue.git) implemented in MATLAB R2022a (The MathWorks Inc., Natick, MA, USA) using the Psychophysics Toolbox extensions (Psychtoolbox-3). Force data were sampled at 47.75 Hz. Dynamometer force data were routed through Lab Streaming Layer (LSL) and LabRecorder (https://github.com/labstreaminglayer/App-LabRecorder).Kinematic data were acquired using a Kinarm End-Point Lab robot with Dexterit-E 3.9.2 software (BKIN Technologies Ltd., Kingston, ON, Canada). For MVC Force and EMG data are available in .xdf files.For AT Kinarm data are available in .kinarm files and EMG data are available in .xdf files.  Each subject folder contains 20 files:SXX_calibration_MVC_1.* - mat & xdfSXX_calibration_MVC_3.* - mat & xdfSXX_calibration_MVC_offset.* - mat & xdf SXX_Fat_TY_ZZ.* - mat & xdf, whereby Y could be 1,2, or 3 indicating the round, and ZZ could be 5, 50, or 75 indicating the fatigue level. Each file contains data for MVC 3, FT, and MVC 1.SXX_Kin_Baseline.* - xdf & kinarmSXX_Kin_TY_ZZ.* - xdf & kinarm, whereby Y could be 1,2, or 3 indicating the round, and ZZ could be 5, 50, or 75 indicating the fatigue level. Each file contains data for AT. For details of the MVC, FT, and AT please see the preprint: https://doi.org/10.1101/2024.12.01.626257  In addition, the following Questionnaire data were obtained: AGQ-S = Achievement Goals Questionnaire for SportBIMAN = Bimanual Tasks in Daily Life QuestionnaireBORG = BORG-CR10 rating scaleEHI = Edinburgh Handedness InventoryGPAQ = WHO Global Physical Activity Questionnaire
DOI: 10.15468/dl.yusu3c
title: Occurrence Download

description: A dataset containing 477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Patagonotothen tessellata"
 ]
}

 The dataset includes 477 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041092-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zg24hc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Patagonotothen wiltoni"
 ]
}

 The dataset includes 60 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041093-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17869520
title: Enhanced Suite of Probabilistic Models for Benchmarking Agentic Debugging Frameworks in Probabilistic Inference

description: This paper presents an extension to the foundational Reactive Oxygen Species (ROS) stochastic differential equation (SDE) model through four probabilistic models implemented in PyMC v5.25.0+. These models provide a robust empirical framework for evaluating agentic debugging methods in probabilistic programming. The models increase in inferential complexity based on stochastic processes relevant to biological aging: a Gaussian Process (GP) regression with hyperparameter optimization for non-parametric covariance estimation, accounting for biological variability \cite{riihimaki2010}; a Hidden Markov Model (HMM) for sequential latent state inference under regime shifts, representative of cellular transitions \cite{munoz2023}; a non-linear SDE for telomere attrition incorporating regime-switching multiplicative noise to capture stochastic shortening variability, improving on prior linear models \cite{wattis2020}; and a Bayesian hierarchical model for epigenetic age acceleration, modeling senescence thresholds through latent methylation transitions \cite{lu2019}.Each model includes reproducible data generation procedures, PyMC implementations using the No-U-Turn Sampler (NUTS) for Hamiltonian Monte Carlo (HMC) inference, and protocols for obtaining high-fidelity reference posteriors via extensive sampling (\( N=10^6 \) draws, effective sample sizes ESS \( >10^5 \), Gelman-Rubin \( \hat{R} < 1.001 \)). The derivations are original and grounded in aging biology to ensure independence from AI training data contamination, confirming novelty—no prior combinations of GP-HMM-SDE-epigenetic models for telomere-senescence benchmarking in agentic settings exist, as verified by an exhaustive arXiv search \cite{riihimaki2010, munoz2023, olofsson1999, lu2019}. Diagnostics from \( N=500 \) draws per chain (after 500 tuning steps) show strong convergence (ESS \( \gtrsim 400 \); \( \hat{R} \lesssim 1.005 \)), supported by simulation-based calibration (SBC) rank histograms uniform over 1000 replications (\( p \)-values \( \in [0.05, 0.95] \)) and prior sensitivity analyses with \( <3\% \) shifts in posterior means.The suite includes detailed mathematical derivations, Stan implementations for validation, diagnostic plots using PGFPlots, model comparisons, and computational profiles (e.g., inference times \( <25 \) s on AMD EPYC 7543 for \( N=500 \), scalable to \( N=10^6 \) with Dask). This benchmark evaluates agentic performance in non-conjugate, high-dimensional inference. Calibration against longitudinal telomere and epigenetic datasets \cite{aviv2018, horvath2013} ensures biological relevance, while SBC-validated posteriors minimize inferential biases, making the framework robust to methodological scrutiny.
DOI: 10.15468/dl.qx2jxq
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campogramma glaycos"
 ]
}

 The dataset includes 79 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041094-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qr2png
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acholoe squamosa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 89 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041097-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avcvdu
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indigofera terminalis",
 "Continent is Africa"
 ]
}

 The dataset includes 91 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041098-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13012/b2idb-8891496_v1
title: Data for "Diverse forest management strategies support functionally and temporally distinct bee communities"

description: Dataset includes bee trait information and species abundance information for bees collected at 29 forests plots in southern Illinois, USA. Plots are located within three public land sites. Environmental data were also collected for each of the 29 plots.
DOI: 10.17026/ar/b8nzyr
title: PAN-00174152 - smooth ware jug type St. 110

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00174152&lt;/p&gt;
description: Modified: 2025-10-21T10:16:41+02:00
DOI: 10.15468/dl.enta5h
title: Occurrence Download

description: A dataset containing 8458906 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is Butterfly distribution records for the UK from Butterfly Conservation, up to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY-NC 4.0",
 "TaxonKey is Nymphalidae",
 "Year 1950-2025"
 ]
}

 The dataset includes 8458906 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041056-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13012/b2idb-2431623_v1
title: Data for "Wild bee response to forest management varies seasonally and is mediated by resource availability"

description: The dataset includes bee community data from a study conducted down in southern Illinois across three forested public land sites. Bee diversity and abundance data, as well as environmental variables, are included for each plot. Each plot was visited a total of four times.
DOI: 10.15468/dl.snb4x4
title: Occurrence Download

description: A dataset containing 1889 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pteronura brasiliensis"
 ]
}

 The dataset includes 1889 records from 102 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041099-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2yggyx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((100.723 1.412183, 100.652716 1.406615, 100.584163 1.390048, 100.519031 1.362891, 100.458923 1.325812, 100.405321 1.279725, 100.359543 1.225765, 100.322716 1.165262, 100.295748 1.099704, 100.279301 1.030707, 100.27378 0.95997, 100.279319 0.889235, 100.295783 0.820242, 100.322764 0.754691, 100.359599 0.694195, 100.40538 0.640245, 100.458979 0.594167, 100.519079 0.557096, 100.584198 0.529945, 100.652734 0.513383, 100.723 0.507816, 100.793266 0.513383, 100.861802 0.529945, 100.926921 0.557096, 100.987021 0.594167, 101.04062 0.640245, 101.086401 0.694195, 101.123236 0.754691, 101.150217 0.820242, 101.166681 0.889235, 101.17222 0.95997, 101.166699 1.030707, 101.150252 1.099704, 101.123284 1.165262, 101.086457 1.225765, 101.040679 1.279725, 100.987077 1.325812, 100.926969 1.362891, 100.861837 1.390048, 100.793284 1.406615, 100.723 1.412183))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041100-251120083545085/datasets/export for details.
DOI: 10.15468/dl.snuw4k
title: Occurrence Download

description: A dataset containing 672229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((116.25722 28.14586,123.72700 28.14586,123.72700 31.13249,116.25722 31.13249,116.25722 28.14586))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 672229 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041008-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17869478
title: Model output for: "Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados"

description: Model data for "Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados" 

Abstract: Bioassay incubation experiments conducted with nutrients and local atmospheric aerosolamendments indicate that phosphorus (P) availability limited phytoplankton growth in the low-nutrientlow-chlorophyll (LNLC) ocean off Barbados. Atmospheric deposition provides a relatively large influx of newnutrients and trace metals to the surface ocean in this region in comparison to other nutrient sources. However,the impact on native phytoplankton is muted due to the high ratio of nitrogen (N) to P (NO3:SRP>40) andthe low P solubility of these aerosols. Atmospheric deposition induces P limitation in this LNLC region by addingmore N and iron (Fe) relative to P. This favors the growth of Prochlorococcus, a genus characterized by low Prequirements and highly efficient P acquisition mechanisms. A global three-dimensional marine ecosystemmodel that includes species-specific phytoplankton elemental quotas/stoichiometry and the atmosphericdeposition of N, P, and Fe supports this conclusion. Future increases in aerosol N loading may thereforeinfluence phytoplankton community structure in other LNLC areas, thereby affecting the biological pumpand associated carbon sequestration.
DOI: 10.5281/zenodo.17869479
title: Model output for: "Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados"

description: Model data for "Effects of African dust deposition on phytoplankton in the western tropical Atlantic Ocean off Barbados" 

Abstract: Bioassay incubation experiments conducted with nutrients and local atmospheric aerosolamendments indicate that phosphorus (P) availability limited phytoplankton growth in the low-nutrientlow-chlorophyll (LNLC) ocean off Barbados. Atmospheric deposition provides a relatively large influx of newnutrients and trace metals to the surface ocean in this region in comparison to other nutrient sources. However,the impact on native phytoplankton is muted due to the high ratio of nitrogen (N) to P (NO3:SRP>40) andthe low P solubility of these aerosols. Atmospheric deposition induces P limitation in this LNLC region by addingmore N and iron (Fe) relative to P. This favors the growth of Prochlorococcus, a genus characterized by low Prequirements and highly efficient P acquisition mechanisms. A global three-dimensional marine ecosystemmodel that includes species-specific phytoplankton elemental quotas/stoichiometry and the atmosphericdeposition of N, P, and Fe supports this conclusion. Future increases in aerosol N loading may thereforeinfluence phytoplankton community structure in other LNLC areas, thereby affecting the biological pumpand associated carbon sequestration.
DOI: 10.15468/dl.yt76n8
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophichthus serpentinus"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041104-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p36tbe
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Indigofera tetrasperma",
 "Continent is Africa"
 ]
}

 The dataset includes 133 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041106-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4zyq5
title: Occurrence Download

description: A dataset containing 403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophichthus cruentifer"
 ]
}

 The dataset includes 403 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041105-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/1a382dde-616e-4894-a4b2-222ec45a8a5d
title: Data underlying the research of: Improving realism of high-resolution hydrological modeling with anthropogenic water use: a study on the Rhine basin

description: The data contains simulated daily discharge data from wflow_sbm version 0.8.1 which allows for the estimation of water demand and abstractions for urban, industrial, livestock, and irrigation at a spatially gridded scale and daily temporal resolution. The model was run from 1990 to 2019 to investigate the impact of incorporating human water use on river discharge of the Rhine.
DOI: 10.4121/1a382dde-616e-4894-a4b2-222ec45a8a5d.v2
title: Data underlying the research of: Improving realism of high-resolution hydrological modeling with anthropogenic water use: a study on the Rhine basin

description: The data contains simulated daily discharge data from wflow_sbm version 0.8.1 which allows for the estimation of water demand and abstractions for urban, industrial, livestock, and irrigation at a spatially gridded scale and daily temporal resolution. The model was run from 1990 to 2019 to investigate the impact of incorporating human water use on river discharge of the Rhine.
DOI: 10.17026/ar/22wuow
title: PAN-00026738 - brooch (construction unknown)

description: &lt;p&gt;This find is registered at Portable Antiquities of the Netherlands with number PAN-00026738&lt;/p&gt;
description: Modified: 2025-10-30T16:34:00+01:00
DOI: 10.15468/dl.qtafpf
title: Occurrence Download

description: A dataset containing 1444 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ophichthus gomesii"
 ]
}

 The dataset includes 1444 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041107-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yenvm
title: Occurrence Download

description: A dataset containing 4296700 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Continent is Europe",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "DatasetKey is Butterfly distribution records for the UK from Butterfly Conservation, up to 2019",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is CC-BY-NC 4.0",
 "TaxonKey is Pieridae",
 "Year 1950-2025"
 ]
}

 The dataset includes 4296700 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041078-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jykwyy
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aricidea longobranchiata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 27 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041108-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.