cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.36bu24
title: Occurrence Download

description: A dataset containing 6328 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pipra fasciicauda Hellmayr, 1906"
 ]
}

 The dataset includes 6328 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006996-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p95wflxp
title: Home Range and Movement Metric Data of Resident and Translocated Giant Gartersnakes (Thamnophis gigas) in Sacramento, CA, USA, in 2018 to 2021

description: The dataset consists of two csv files one for home range and net displacement analysis for adult snakes with at least 20 locations collected during the study period and one for the analysis of movement metrics for all adult snakes in the study. The home range data contains the calculated 100 percent and 95 percent minimum convex polygons (MCP) and 95 percent adaptive local convex hull (a-LoCoH) home range estimates, 3 measures of net displacement from the release location of the snake as well as other pertinent information about individual snakes (year included in study, id, treatment group, site, snout to vent length (SVL)). The movement data contains calculations of the following movement metrics: sinuosity, start-to-end distance, and total distance traversed of seasonal movement paths as well as information about individual snakes described above.

These data support the following publication:
Nguyen, A.M., Halstead, B.J. and Todd, B.D., 2024. Effect of translocation on home range and movements of giant gartersnakes. Global Ecology and Conservation, 49, p.e02789. https://doi.org/10.1016/j.gecco.2023.e02789.
DOI: 10.15468/dl.wzfkhx
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Sweden",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ovibos moschatus (Zimmermann, 1780)",
 "Year 1945-2022"
 ]
}

 The dataset includes 34 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0180136-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u6wjn6
title: Occurrence Download

description: A dataset containing 123 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Haplopappus scrobiculatus (Nees) DC."
 ]
}

 The dataset includes 123 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237474-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7nqj6t
title: Occurrence Download

description: A dataset containing 621114 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aquila chrysaetos (Linnaeus, 1758)"
 ]
}

 The dataset includes 621114 records from 686 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0237444-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yuwqe2
title: Occurrence Download

description: A dataset containing 2901 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Neophema chrysogaster (Latham, 1790))"
 ]
}

 The dataset includes 2901 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023089-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x8trup
title: Occurrence Download

description: A dataset containing 4231 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Epinecrophylla ornata (P.L.Sclater, 1853)"
 ]
}

 The dataset includes 4231 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052009-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8csfc2
title: Occurrence Download

description: A dataset containing 2644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Apodanthaceae)"
 ]
}

 The dataset includes 2644 records from 206 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023170-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ds7fx0
title: Occurrence Download

description: A dataset containing 578 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Blighia sapida K.D.Koenig"
 ]
}

 The dataset includes 578 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009034-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4pdsh
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calophyllum alboramulum P.F.Stevens"
 ]
}

 The dataset includes 7 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072446-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.igk74w
title: Occurrence Download

description: A dataset containing 64482 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Araneae",
 "Country is United States of America",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64482 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009034-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv6ua2
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Macaca tonkeana (Meyer, 1899)"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072452-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbcvzm
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diospyros greveana H.Perrier"
 ]
}

 The dataset includes 45 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023131-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qb24fj
title: Occurrence Download

description: A dataset containing 543 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canthon humectus (Say, 1832)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 543 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009034-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76w8cz
title: Occurrence Download

description: A dataset containing 593 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Cyornis omissus (Hartert, 1896)"
 ]
}

 The dataset includes 593 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023095-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jqzuy
title: Occurrence Download

description: A dataset containing 9680 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Alophoixus flaveolus (Gould, 1836)"
 ]
}

 The dataset includes 9680 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050413-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayc9bg
title: Occurrence Download

description: A dataset containing 1724354 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Muridae)"
 ]
}

 The dataset includes 1724354 records from 1822 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023084-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvsdtj
title: Occurrence Download

description: A dataset containing 109437 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((80.81045 26.70647, 81.23309 26.70647, 81.23309 26.98522, 80.81045 26.98522, 80.81045 26.70647))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 109437 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019072-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6fv9e6
title: Occurrence Download

description: A dataset containing 60868 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Tokelau"
 ]
}

 The dataset includes 60868 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019076-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvbb7s
title: Occurrence Download

description: A dataset containing 300395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lepidoptera",
 "HasCoordinate is true",
 "Country is one of (Hungary)"
 ]
}

 The dataset includes 300395 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019074-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3p4va
title: Occurrence Download

description: A dataset containing 542893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((76.13706 10.4228, 76.29218 10.4228, 76.29218 10.62631, 76.13706 10.62631, 76.13706 10.4228))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 542893 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019075-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwyrhs
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((80.30641 25.45104, 80.37019 25.45104, 80.37019 25.5099, 80.30641 25.5099, 80.30641 25.45104))",
 "Year is greater than or equal to 2013",
 "HasGeospatialIssue is false",
 "TaxonKey is Aves",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019079-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dd.fssqjy
title: (title pending)

description: (for paper by Claudia Nuñez-Penichet)
DOI: 10.15468/dl.ecqdvp
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bassaricyon neblina Helgen, Pinto, Kays, Helgen, Tsuchiya, Quinn, Wilson & Maldonado, 2013"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005216-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hfuq2x
title: Occurrence Download

description: A dataset containing 18179 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Sweden",
 "Country is Finland",
 "Country is Norway"
 ]
 },
 "Year 1990-2018",
 {
 "or" : [
 "TaxonKey is Trichophorum cespitosum (L.) Hartm.",
 "TaxonKey is Scirpus caespitosus L.",
 "TaxonKey is Trichophorum caespitosum (L.) Hartman"
 ]
 }
 ]
}

 The dataset includes 18179 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003501-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zee6yz
title: Occurrence Download

description: A dataset containing 4678379 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 4678379 records from 2247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002291-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5rj4971q
title: MassIVE MSV000098286 - Lemonade Creek soil heterotrophy experiment
title: Lemonade Creek soil samples. Algae colonize the soil just below the surface. Samples were taken in quadruplicate at four time points starting at 7:30 am (~30 min prior to sunrise) and finished at 8:00 pm (dark). Each replicate sample has both a pellet and supernatant. Soil material was scraped from the green layer beneath the surface, suspended in 10 mls sterile ultrapure water and shaken vigorously to suspend all biomass. Soil mineral material was allowed to settle (~10-15 sec), the supernatant was decanted to a fresh 15 ml Falcon tube, and then centrifuged (2100 x g, 5 minutes). Supernatant was poured off to a fresh tube and then it and the pellet (soil biomass plus some silt materials) were flash frozen in ethanol – dry ice bath and then stored on dry ice until transferred to -80°C freezer. The work (proposal:https://doi.org/10.46936/10.25585/60000481) conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy operated under Contract No. DE-AC02-05CH11231.
DOI: 10.15468/dl.r3zuwv
title: Occurrence Download

description: A dataset containing 3094313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Rodentia"
 ]
}

 The dataset includes 3094313 records from 439 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065969-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13935287
title: TFBIcomp_repro_pack

description: Reproducibility pack for Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.) This repro pack is sufficient to generate all plots and some (all?) computed values (discussed in the text of the paper) in the first submitted version of our paper.

Includes simulation input decks, output files, and python codes used for analysis. Also includes plots_output_reference which shows the plots created when we ran the python code.

Required codes to use this material: python>=3.9. See code_README.txt for detailed installation instructions. See code/frozen_package_list.txt for the full list of package versions used. The code directory includes the versions of atom_py, helita, and plasmacalcs which were used here. All other packages should be available directly through pypi, via pip install. 

See data_README.txt for detailed descriptions of data contents. You can also use the zenodo file browser to view files before downloading.

See also:



(https://doi.org/10.5281/zenodo.14989733) which contains an updated repro pack, for the second submitted version of our paper.

(https://doi.org/10.5281/zenodo.13935187) which contains a subsampled version of the 3D simulations.



Not required in any way by the TFBIcomp_repro_pack. Optional.



Updated versions of PlasmaCalcs (not required here):



installable via pip install PlasmaCalcs: pypi.org/project/PlasmaCalcs

most recent version of PlasmaCalcs: gitlab.com/Sevans7/plasmacalcs
DOI: 10.5281/zenodo.13935288
title: TFBIcomp_repro_pack

description: Reproducibility pack for Thermal Farley-Buneman Instability paper by the people listed as creators and contributors here. (Paper officially published to ApJ on June 3, 2025; see: https://doi.org/10.3847/1538-4357/adcd70.) This repro pack is sufficient to generate all plots and some (all?) computed values (discussed in the text of the paper) in the first submitted version of our paper.

Includes simulation input decks, output files, and python codes used for analysis. Also includes plots_output_reference which shows the plots created when we ran the python code.

Required codes to use this material: python>=3.9. See code_README.txt for detailed installation instructions. See code/frozen_package_list.txt for the full list of package versions used. The code directory includes the versions of atom_py, helita, and plasmacalcs which were used here. All other packages should be available directly through pypi, via pip install. 

See data_README.txt for detailed descriptions of data contents. You can also use the zenodo file browser to view files before downloading.

See also:



(https://doi.org/10.5281/zenodo.14989733) which contains an updated repro pack, for the second submitted version of our paper.

(https://doi.org/10.5281/zenodo.13935187) which contains a subsampled version of the 3D simulations.



Not required in any way by the TFBIcomp_repro_pack. Optional.



Updated versions of PlasmaCalcs (not required here):



installable via pip install PlasmaCalcs: pypi.org/project/PlasmaCalcs

most recent version of PlasmaCalcs: gitlab.com/Sevans7/plasmacalcs
DOI: 10.15468/dl.zrz8y3
title: Occurrence Download

description: A dataset containing 3094313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is Rodentia"
 ]
}

 The dataset includes 3094313 records from 439 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065974-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5g37s
title: Occurrence Download

description: A dataset containing 33593 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.continent = 'NORTH_AMERICA'
 AND (occurrence.taxonkey = 1459 OR occurrence.acceptedtaxonkey = 1459 OR occurrence.kingdomkey = 1459 OR occurrence.phylumkey = 1459 OR occurrence.classkey = 1459 OR occurrence.orderkey = 1459 OR occurrence.familykey = 1459 OR occurrence.genuskey = 1459 OR occurrence.specieskey = 1459)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 33593 records were derived from 335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065973-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.