cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1422036
title: Extreme outliers among state-level causes of death, 1999-2013

description: This table identifies all state-level causes of death that were at least five times the national rate in at least one of the periods 1999-2003, 2004-2008, and 2009-2013. Data are based on the 113 Cause of Death list and are based on the CDC's Underlying Cause of Death file accessible at: http://wonder.cdc.gov/ucd-icd10.html.
DOI: 10.6084/m9.figshare.1422036.v1
title: Extreme outliers among state-level causes of death, 1999-2013

description: This table identifies all state-level causes of death that were at least five times the national rate in at least one of the periods 1999-2003, 2004-2008, and 2009-2013. Data are based on the 113 Cause of Death list and are based on the CDC's Underlying Cause of Death file accessible at: http://wonder.cdc.gov/ucd-icd10.html.
DOI: 10.6084/m9.figshare.1422019
title: PDB ligand mapping from different sources

description: Small molecule intersects between PDB structures in GtoPdb, PDBe, MMDB and PDBbind (see blogpost link)
DOI: 10.6084/m9.figshare.1422011
title: DUQUE article 15

description: Includes the data underlying the tables of DUQUE article 15 (text to be updated after acceptance for publication, including publication details).
DOI: 10.6084/m9.figshare.1422019.v1
title: PDB ligand mapping from different sources

description: Small molecule intersects between PDB structures in GtoPdb, PDBe, MMDB and PDBbind (see blogpost link)
DOI: 10.6084/m9.figshare.1421999
title: VOICES Deliverable 5.3

description: Project deliverable
DOI: 10.6084/m9.figshare.1422011.v1
title: DUQUE article 15

description: Includes the data underlying the tables of DUQUE article 15 (text to be updated after acceptance for publication, including publication details).
DOI: 10.6084/m9.figshare.1421985
title: Protein expression levels of 77 proteins from Control and Down Syndrome mice

description: Protein expression levels of 77 proteins measured in the nuclear fraction of cortex from control and Down syndrome mice (Ts65Dn). First column indicates mouse id.<br>For each mouse 15 measurements were registered.<br>Last four columns indicate: Genotype (control or trisomy), Treatment (memantine or saline), Behavior (context-shock (C/S) or shock-context (S/C)) and the class of mice according to the three features (c-CS-s, c-CS-m, c-SC-s, c-SC-m, c-SC-s, t-CS-s, t-CS-m, t-SC-s, t-SC-m, t-SC-s ). These data are a subset of those used in Ahmed et al PLoS One. 2015 10(3):e0119491.
DOI: 10.6084/m9.figshare.1421999.v1
title: VOICES Deliverable 5.3

description: Project deliverable
DOI: 10.6084/m9.figshare.1421988
title: Inter- vs. intra-individual variation and temporal repeatability of escape responses in the coral reef fish Amblyglyphidodon curacao

description: Data for: <br>Jornod M and Roche DG (in prep) Inter- vs. intra-individual variation and temporal repeatability of escape responses in the coral reef fish Amblyglyphidodon curacao <br>Data collected by MJ and DGR. Please refer to the manuscript for data collection methods and statistical analyses. For questions or to notify the authors if any errors are identified in the data, please contact Dominique Roche (dominique.roche@mail.mcgill.ca) or Maïwenn Jornod (maiwenn.jornod@unine.ch).
DOI: 10.6084/m9.figshare.1421975
title: SRB Survey Responses 2014

description: Responses in full to a survey distributed to Cochrane review groups regarding selective reporting bias (SRB). The primary aim of this research was to identify the practices of CRGs for minimising SRB in their systematic reviews. Where applicable, identifying information has been removed.
DOI: 10.6084/m9.figshare.1421988.v1
title: Inter- vs. intra-individual variation and temporal repeatability of escape responses in the coral reef fish Amblyglyphidodon curacao

description: Data for: <br>Jornod M and Roche DG (in prep) Inter- vs. intra-individual variation and temporal repeatability of escape responses in the coral reef fish Amblyglyphidodon curacao <br>Data collected by MJ and DGR. Please refer to the manuscript for data collection methods and statistical analyses. For questions or to notify the authors if any errors are identified in the data, please contact Dominique Roche (dominique.roche@mail.mcgill.ca) or Maïwenn Jornod (maiwenn.jornod@unine.ch).
DOI: 10.6084/m9.figshare.1421974
title: Supplementary data

description: Supplementary data for :Uptake of retrograde tracers by intact optic nerve axons: A new way to label retinal ganglion cells
DOI: 10.6084/m9.figshare.1421926
title: Experimental evidence shows the importance of behavioural plasticity and body size under competition in waterfowl

description: this dataset is linked to our paper "Experimental evidence shows the importance of behavioural plasticity and body size under competition in waterfowl". The detail information can be found in this paper.
DOI: 10.6084/m9.figshare.1421962
title: A species-level phylogeny of the Cretaceous Hesperornithiformes (Aves: Ornithuromorpha): implications for body size evolution amongst the earliest diving birds

description: Despite extensive discoveries across the globe over the past two centuries, little phylogenetic work has been done on the Hesperornithiformes. Spanning the late Early to Late Cretaceous, hesperornithiforms are one of the most diverse groups of Mesozoic birds in terms of both their geographical distribution and the wide differences in body size and diving specializations. This study presents the first phylogenetic analysis of the Hesperornithiformes that includes a majority of the described taxa, enabling the first detailed look at evolutionary relationships within the clade. The results of this study support the monophyly of the Hesperornithiformes, which is recovered as the sister clade to the avian crown group, Neornithes. Within the Hesperornithiformes, the Brodavidae and Hesperornithidae are monophyletic while the Baptornithidae are polyphyletic. Little evidence of species-level taxonomic differentiation is found within <i>Hesperornis</i>, with many species indistinguishable from <i>Hesperornis regalis</i>. Evolution within the Hesperornithiformes provides a fascinating example of progressive development of specialized diving adaptations in birds. The acquisition of these diving specializations appears to be uncorrelated to the independent evolution of multiple large increases in body size.
DOI: 10.6084/m9.figshare.1421974.v1
title: Supplementary data

description: Supplementary data for :Uptake of retrograde tracers by intact optic nerve axons: A new way to label retinal ganglion cells
DOI: 10.6084/m9.figshare.1421975.v1
title: SRB Survey Responses 2014

description: Responses in full to a survey distributed to Cochrane review groups regarding selective reporting bias (SRB). The primary aim of this research was to identify the practices of CRGs for minimising SRB in their systematic reviews. Where applicable, identifying information has been removed.
DOI: 10.6084/m9.figshare.1421962.v1
title: A species-level phylogeny of the Cretaceous Hesperornithiformes (Aves: Ornithuromorpha): implications for body size evolution amongst the earliest diving birds

description: Despite extensive discoveries across the globe over the past two centuries, little phylogenetic work has been done on the Hesperornithiformes. Spanning the late Early to Late Cretaceous, hesperornithiforms are one of the most diverse groups of Mesozoic birds in terms of both their geographical distribution and the wide differences in body size and diving specializations. This study presents the first phylogenetic analysis of the Hesperornithiformes that includes a majority of the described taxa, enabling the first detailed look at evolutionary relationships within the clade. The results of this study support the monophyly of the Hesperornithiformes, which is recovered as the sister clade to the avian crown group, Neornithes. Within the Hesperornithiformes, the Brodavidae and Hesperornithidae are monophyletic while the Baptornithidae are polyphyletic. Little evidence of species-level taxonomic differentiation is found within <i>Hesperornis</i>, with many species indistinguishable from <i>Hesperornis regalis</i>. Evolution within the Hesperornithiformes provides a fascinating example of progressive development of specialized diving adaptations in birds. The acquisition of these diving specializations appears to be uncorrelated to the independent evolution of multiple large increases in body size.
DOI: 10.6084/m9.figshare.1421926.v1
title: Experimental evidence shows the importance of behavioural plasticity and body size under competition in waterfowl

description: this dataset is linked to our paper "Experimental evidence shows the importance of behavioural plasticity and body size under competition in waterfowl". The detail information can be found in this paper.
DOI: 10.6084/m9.figshare.1420640
title: ‘The eCrystals Federation’ Management and Publication of Small Molecule Structure Data for the Whole Crystallographic Community

description: Thirty years ago a research student would present about five crystal structures as their PhD thesis, however with modern technologies and good crystals this can now be achieved in the timespan of a single morning. This increase in pace of generation further exacerbates a problem in the communication of the results. Additionally, the general route for the publication of a crystal structure report is coupled with and often governed by the underlying chemistry and is therefore subject to the lengthy peer review process and tied to the timing of the publication as a whole. This bottleneck in the dissemination of crystal structure data hinders the potential growth of databases and the data mining studies that are reliant on these collections (just 500,000 small unit cell crystal structures are available in the CSD, ICSD & CRYSMET). In addition, publication in the mainstream literature still offers only indirect (and often subscription controlled) access to this data. The eBank-UK (http://www.ukoln.ac.uk/projects/ebank-uk/) project has addressed this problem by establishing an institutional data repository that supports, manages and disseminates metadata relating to crystal structure data (i.e. all the files generated during a crystal structure determination). This process alters the traditional method of peer review by openly providing crystal structure data where the reader or user may directly check correctness and validity. The repository (http://ecrystals.chem.soton.ac.uk) makes available all the raw, derived and results data from a crystallographic experiment with little further researcher effort after the creation of a normal completed structure in a laboratory archive. Not only does this approach allow rapid release of crystal structure data into the public domain, but it can also provide mechanisms for value added services that allow rapid discovery of the data for further studies and reuse, whilst ownership of the data is retained by the creator.
DOI: 10.6084/m9.figshare.1420641
title: Zadanie indywidualne P_FIP_Krawczyk

description: This paper presents 10 steps of value creation entity Polish companies in over four years. To determine the level of enterprise value is calculated and interpreted: 1. CR (sales revenue) 2. CO (operating cycle) 3. The assets needed to achieve CR by implementing CO 4. Amounts owed to suppliers 5. The demand for working capital and capital employed, liabilities 6. The structure of the capital needed 7. FCF (free cash flow) 8. IRR (return, the threshold of profitability, internal rate of return) 9. CC Feet cost of capital 10. The increase in the value of wealth owners (ΔV, EVA®)
DOI: 10.6084/m9.figshare.1420633
title: Recenzja pracy indywidualnej FIP_Radziwołek_P_Krawczyk

description: Review pertains to the work Fri. Financial management in the enterprise on the example of a company engaged in printing newspapers . The aim of this study was to present the 10 steps of value creation entity on the basis of Polish companies . To determine the level of enterprise value calculated and interpreted author : CR - sales revenues ; CO - operating cycle ; ASSETS - needed to achieve CR by implementing CO; ZWD - Liabilities to suppliers ; DEMAND - The demand for working capital , the need for capital employed , liabilities ; E / D - structure needed capital ( own funds if { E} how much borrowed { D} ) ; FCF - free cash flow ; IRR - (return , the threshold of profitability, internal rate of return ) ; CC - capital cost (how much they cost money involved in the business ) ; The increase in the value of wealth owners ( delta V , NPV, residual profit ) .
DOI: 10.6084/m9.figshare.1420640.v1
title: ‘The eCrystals Federation’ Management and Publication of Small Molecule Structure Data for the Whole Crystallographic Community

description: Thirty years ago a research student would present about five crystal structures as their PhD thesis, however with modern technologies and good crystals this can now be achieved in the timespan of a single morning. This increase in pace of generation further exacerbates a problem in the communication of the results. Additionally, the general route for the publication of a crystal structure report is coupled with and often governed by the underlying chemistry and is therefore subject to the lengthy peer review process and tied to the timing of the publication as a whole. This bottleneck in the dissemination of crystal structure data hinders the potential growth of databases and the data mining studies that are reliant on these collections (just 500,000 small unit cell crystal structures are available in the CSD, ICSD & CRYSMET). In addition, publication in the mainstream literature still offers only indirect (and often subscription controlled) access to this data. The eBank-UK (http://www.ukoln.ac.uk/projects/ebank-uk/) project has addressed this problem by establishing an institutional data repository that supports, manages and disseminates metadata relating to crystal structure data (i.e. all the files generated during a crystal structure determination). This process alters the traditional method of peer review by openly providing crystal structure data where the reader or user may directly check correctness and validity. The repository (http://ecrystals.chem.soton.ac.uk) makes available all the raw, derived and results data from a crystallographic experiment with little further researcher effort after the creation of a normal completed structure in a laboratory archive. Not only does this approach allow rapid release of crystal structure data into the public domain, but it can also provide mechanisms for value added services that allow rapid discovery of the data for further studies and reuse, whilst ownership of the data is retained by the creator.
DOI: 10.6084/m9.figshare.1420641.v1
title: Zadanie indywidualne P_FIP_Krawczyk

description: This paper presents 10 steps of value creation entity Polish companies in over four years. To determine the level of enterprise value is calculated and interpreted: 1. CR (sales revenue) 2. CO (operating cycle) 3. The assets needed to achieve CR by implementing CO 4. Amounts owed to suppliers 5. The demand for working capital and capital employed, liabilities 6. The structure of the capital needed 7. FCF (free cash flow) 8. IRR (return, the threshold of profitability, internal rate of return) 9. CC Feet cost of capital 10. The increase in the value of wealth owners (ΔV, EVA®)
DOI: 10.6084/m9.figshare.1420626
title: Altmetric and citation data for REF impact case study analysis [Altmetric blog]

description: This file contains the following impact data for publications from authors at London School of Hygiene and Tropical Medicine and Exeter University, published between 2012 and 2013: 1. Top ten articles by overall attention for each institution, as measured by Altmetric’s attention score; 2. Top ten articles by attention for each institution that were submitted with a non-redacted REF impact case study; and 3. Top ten articles by Scopus citation count for each institution. This data was compiled in support of a small scale study by Altmetric, published 5/21/2015 on the Altmetric blog, that sought to determine if themes to impact could be discovered related to publications submitted with REF2014 impact case studies.
DOI: 10.6084/m9.figshare.1420628
title: Recenzja pracy indywidualnej FIP_Dąbrowska_P_Krawczyk

description: Review concerns the work, the aim of which was to examine the condition of the financial and economic institution engaged in printing newspapers. The author of the work has made the calculations, based on 10 steps and presented and interpreted the results.
DOI: 10.6084/m9.figshare.1420620
title: Clinical Strains of Listeria monocytogenes From the 2011 Cantaloupe Outbreak Show Evidence of Biofilm Formation on Cantaloupe Food-Conditioning Film

description: In 2011 an outbreak of listeriosis associated with cantaloupes was recorded as the deadliest foodborne disease outbreak in the United States in 90 years1. Interestingly, this was also the first recorded incident associated with cantaloupe, and one of comparatively few outbreaks of listeriosis associated with produce. It is known that Listeria monocytogenes can be isolated from food processing plants, and biofilm formation is thought to be a factor in how particular strains persist in these plants. Previous work from our lab2 has demonstrated that Listeria monocytogenes outbreak strains on food-conditioning films can grow to high cell densities to form biofilms composed of web-like extracellular polymeric substances. Therefore, we sought to identify biological factors that might facilitate Listeria monocytogenes biofilm formation on cantaloupe food-conditioning films. Four clinical strains associated with the cantaloupe outbreak were obtained from the Center for Disease Control and Prevention (CDC). Three of the four strains were also found in the cantaloupe processing plant. Molecular subtyping of the four outbreak strains revealed that they shared key molecular markers with isolates seen in previous outbreaks (Lomonaco et al., unpublished data). One outbreak strain represented a novel outbreak strain and the other three strains were identified as representing two novel epidemic clones. All strains were analyzed using an epifluorescence microscopy biofilm assay. Cantaloupe food-conditioning films enhanced biofilm formation, similar to that seen before with conditioning films made from ready-to-eat meat and poultry products. In particular, cantaloupe rind appeared to enhance attachment, growth and biofilm formation. Interestingly, there was some variability in the growth patterns of different strains, e.g. a strain containing the comK prophage region produced more extracellular polymeric substance. The two epidemic clones included serotype 1/2a and 1/2b strains that had also been previously isolated together from a poultry processing plant, and thus might represent a mix-serotype biofilm.
DOI: 10.6084/m9.figshare.1420628.v1
title: Recenzja pracy indywidualnej FIP_Dąbrowska_P_Krawczyk

description: Review concerns the work, the aim of which was to examine the condition of the financial and economic institution engaged in printing newspapers. The author of the work has made the calculations, based on 10 steps and presented and interpreted the results.
DOI: 10.6084/m9.figshare.1420633.v1
title: Recenzja pracy indywidualnej FIP_Radziwołek_P_Krawczyk

description: Review pertains to the work Fri. Financial management in the enterprise on the example of a company engaged in printing newspapers . The aim of this study was to present the 10 steps of value creation entity on the basis of Polish companies . To determine the level of enterprise value calculated and interpreted author : CR - sales revenues ; CO - operating cycle ; ASSETS - needed to achieve CR by implementing CO; ZWD - Liabilities to suppliers ; DEMAND - The demand for working capital , the need for capital employed , liabilities ; E / D - structure needed capital ( own funds if { E} how much borrowed { D} ) ; FCF - free cash flow ; IRR - (return , the threshold of profitability, internal rate of return ) ; CC - capital cost (how much they cost money involved in the business ) ; The increase in the value of wealth owners ( delta V , NPV, residual profit ) .
DOI: 10.6084/m9.figshare.1420626.v1
title: Altmetric and citation data for REF impact case study analysis [Altmetric blog]

description: This file contains the following impact data for publications from authors at London School of Hygiene and Tropical Medicine and Exeter University, published between 2012 and 2013: 1. Top ten articles by overall attention for each institution, as measured by Altmetric’s attention score; 2. Top ten articles by attention for each institution that were submitted with a non-redacted REF impact case study; and 3. Top ten articles by Scopus citation count for each institution. This data was compiled in support of a small scale study by Altmetric, published 5/21/2015 on the Altmetric blog, that sought to determine if themes to impact could be discovered related to publications submitted with REF2014 impact case studies.
DOI: 10.6084/m9.figshare.1420577
title: Physician Financial Relationships with Industry 2011

description: This dataset contains the industry payments and financial relationships with U.S. physicians from 432 for-profit companies that publically reported data. These data were derived from Kyruus, is a software-based solutions company that uses big data to optimize patient access and provider network operations for large health systems across the country. These data contain individual-level information on physicians’ financial relationships with industry in 2011, including companies from whom they received money, the monetary value of these interactions, and the reason for the financial tie (consulting, research funding, meals and travel, etc.). Additionally, these data include demographic information such as age, gender, medical specialty and primary location. We merged these individual-level data with institution-level data from the American Hospitals Association (AHA) 2011 Annual Survey (which has to be obtained independently due to liscense restrictions) and the National Institutes of Health (NIH) 2011 publically searchable database. Kyruus provided permission for data sharing.
DOI: 10.6084/m9.figshare.1420590
title: Dissecting allele architecture of early onset IBD using high-density genotyping

description: The inflammatory bowel diseases (IBD) are common, complex disorders in which genetic and environmental factors are believed to interact leading to chronic inflammatory responses against the gut microbiota. Earlier genetic studies performed in mostly adult population of European descent identified 163 loci affecting IBD risk, but most have relatively modest effect sizes, and altogether explain only ~20% of the genetic susceptibility. Pediatric onset represents about 25% of overall incident cases in IBD, characterized by distinct disease physiology, course and risks. The goal of this study is to compare the allelic architecture of early onset IBD with adult onset in population of European descent.