cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11608182.v1
title: SCI (2020 version) - Continent

description: The collection contains forest Structural Condition Index data for the Tropical and Subtropical Moist Broadleaf Forests Biome. The collection is updated from the data provided in Hansen, A. et al. Global humid tropics forest structural condition and forest structural integrity maps. Scientific Data 6, 232, doi:10.1038/s41597-019-0214-3 (2019). Loss year extends to 2018. The spatial extent was expanded to the full biome.
DOI: 10.6084/m9.figshare.11607978
title: An algorithmic approach to South Indian classical music

description: We develop a theoretical framework for representation and automated generation of South Indian classical music. The foundational part of the latter is based on symbolic dynamics and is implemented by translating the lexicographic rules for a rāga to constraints on a Markov chain whose state space is a layered graph. We analyze the statistical properties of this Markov chain from the point of view of information theory. We also develop several tools in music signal processing, such as, (a) a procedure for automated generation of <i>gamakas</i> or ornamental notes, unique to South Indian classical music, (b) rhythm synchronization, and (c) an algorithm for perceptual scale shifts. The Online Supplement has computer synthesized music from Śankarābharaṇa rāga, rhythm synchronized music for a Mōhana rāga composition, original and synthesized gamakas over madhyama for Begaḍa and Nīlāmbari rāgas, and perceptually scale shifted rāgas Hindoḷa, Madhyamāvati, Śuddha sāveri, and Udaya ravi chandrikā rāgas from the base Mōhana rāga.
DOI: 10.6084/m9.figshare.11607978.v1
title: An algorithmic approach to South Indian classical music

description: We develop a theoretical framework for representation and automated generation of South Indian classical music. The foundational part of the latter is based on symbolic dynamics and is implemented by translating the lexicographic rules for a rāga to constraints on a Markov chain whose state space is a layered graph. We analyze the statistical properties of this Markov chain from the point of view of information theory. We also develop several tools in music signal processing, such as, (a) a procedure for automated generation of <i>gamakas</i> or ornamental notes, unique to South Indian classical music, (b) rhythm synchronization, and (c) an algorithm for perceptual scale shifts. The Online Supplement has computer synthesized music from Śankarābharaṇa rāga, rhythm synchronized music for a Mōhana rāga composition, original and synthesized gamakas over madhyama for Begaḍa and Nīlāmbari rāgas, and perceptually scale shifted rāgas Hindoḷa, Madhyamāvati, Śuddha sāveri, and Udaya ravi chandrikā rāgas from the base Mōhana rāga.
DOI: 10.6084/m9.figshare.11607294.v1
title: The automatic construction of bootstrap confidence intervals

description: The standard intervals, e.g., θ̂±1.96σ̂ for nominal 95% two-sided coverage, are familiar and easy to use, but can be of dubious accuracy in regular practice. Bootstrap confidence intervals offer an order of magnitude improvement–from first order to second order accuracy. This paper introduces a new set of algorithms that automate the construction of bootstrap intervals, substituting computer power for the need to individually program particular applications. The algorithms are described in terms of the underlying theory that motivates them, along with examples of their application. They are implemented in the R package bcaboot.
DOI: 10.6084/m9.figshare.11605818.v1
title: Multi-model (VIC, NoahMP, SAC-SMA, and Catchment) parameters and representative outputs; pre-processing and post-processing data and scripts, for analyses in the Northern Sierra Nevada Basin, the Southern Sierra Nevada Basin, the Upper Colorado Basin, and the Columbia Basin, from 1916 to 2018.

description: This package includes all the representative data used in the analyses in the paper entitled "Understanding the role of asymmetrical warming on streamflow changes in the Western U.S.", submitted by Zhaoxin Ban, Tapash Das, Dan Cayan, Mu Xiao, and Dennis P. Lettenmaier to <i>Water Resources Research.</i>
DOI: 10.6084/m9.figshare.11605428
title: CreativitySocialContext.xlsx

description: Data base of an experiment interested in the effect of social context on creative performance of children, adolescents and adults.
DOI: 10.6084/m9.figshare.11605428.v1
title: essai.xlsx

description: Data base of an experiment interested in the effect of social context on creative performance of children, adolescents and adults.
DOI: 10.6084/m9.figshare.11605428.v2
title: essai.xlsx

description: Data base of an experiment interested in the effect of social context on creative performance of children, adolescents and adults.
DOI: 10.6084/m9.figshare.11605428.v3
title: CreativitySocialContext.xlsx

description: Data base of an experiment interested in the effect of social context on creative performance of children, adolescents and adults.
DOI: 10.6084/m9.figshare.11605344
title: What Researchers Think About the Culture They Work In: Quantitative Dataset

description: Here we present an anonymized version of the dataset that we collected in the quantitative phase of Wellcome’s research on research culture. Additionally, we present a document detailing how the data was transformed to protect anonymity. We also present a flowchart that indicates how participants were guided to answer questions in the survey.
DOI: 10.6084/m9.figshare.11605344.v2
title: What Researchers Think About the Culture They Work In: Quantitative Dataset

description: Here we present an anonymized version of the dataset that we collected in the quantitative phase of Wellcome’s research on research culture. Additionally, we present a document detailing how the data was transformed to protect anonymity. We also present a flowchart that indicates how participants were guided to answer questions in the survey.
DOI: 10.6084/m9.figshare.11605338
title: Cif_files_and_exp_data.zip

description: Synchrotron X-ray diffraction data obtained at I11, Diamond. Inputs files from TOPAS used to refine the data and .cif files generated from the refinements.
DOI: 10.6084/m9.figshare.11605344.v1
title: What Researchers Think About the Culture They Work In: Quantitative Dataset

description: Here we present an anonymized version of the dataset that we collected in the quantitative phase of Wellcome’s research on research culture. Additionally, we present a document detailing how the data was transformed to protect anonymity. We also present a flowchart that indicates how participants were guided to answer questions in the survey.
DOI: 10.6084/m9.figshare.11605278
title: scf3 pdf for anharmonicity and scissoring modes

description: ScF3 Data for paper https://arxiv.org/abs/1911.12695 / Phys Rev B 101, 064306 with information required to perform refinements
DOI: 10.6084/m9.figshare.11605338.v1
title: Cif_files_and_exp_data.zip

description: Synchrotron X-ray diffraction data obtained at I11, Diamond. Inputs files from TOPAS used to refine the data and .cif files generated from the refinements.
DOI: 10.23644/uu.11605254
title: Form B-Eng.pdf

description: Form for group B of our experiment: Data Hub with use cases, Planning Poker with user stories.<br>
DOI: 10.6084/m9.figshare.11605278.v2
title: scf3 pdf for anharmonicity and scissoring modes

description: ScF3 Data for paper https://arxiv.org/abs/1911.12695 / Phys Rev B 101, 064306 with information required to perform refinements
DOI: 10.6084/m9.figshare.11605278.v1
title: scf3 pdf for anharmonicity and scissoring modes

description: ScF3 Data for paper https://arxiv.org/abs/1911.12695 with information required to perform refinements
DOI: 10.23644/uu.11605251
title: Form A-Eng.pdf

description: Form for group A of our experiment: Data Hub with user stories, Planning Poker with use cases.<br>
DOI: 10.23644/uu.11605254.v1
title: Form B-Eng.pdf

description: Form for group B of our experiment: Data Hub with use cases, Planning Poker with user stories.<br>
DOI: 10.6084/m9.figshare.11605236
title: Killifish pace-of-life syndromes

description: data to support conclusions in Methling et al. 2020 - submitted to Evol Ecol
DOI: 10.6084/m9.figshare.11605236.v1
title: Killifish pace-of-life syndromes

description: data to support conclusions in Methling et al. 2020 - submitted to Evol Ecol
DOI: 10.6084/m9.figshare.11605215
title: PLAID 2017

description: The 2017 version of Plug-Load Appliance Identification Dataset (PLAID), containing voltage and current measurements from different electrical household appliances sampled at 30 kHz, collected at 65 different locations in Pittsburgh, Pennsylvania (US).
DOI: 10.6084/m9.figshare.11605074
title: PLAID 2014

description: The 2014 version of Plug-Load Appliance Identification Dataset (PLAID), containing voltage and current measurements from different electrical household appliances sampled at 30 kHz, collected at 65 different locations in Pittsburgh, Pennsylvania (US).
DOI: 10.6084/m9.figshare.11605077
title: A time series dataset of coastal fish community following a cold intrusion event in the Penghu Islands, Taiwan

description: Understanding variation of a community help establish useful mechanisms to mitigate the impacts of a disturbance. In late January and February 2008, there was a high mortality of fishes in the seas surrounding the coasts of the Penghu Islands in Taiwan due to an extreme low seawater temperature event. Here, we describe a time series dataset of fish communities at eight sampling stations along the coasts of the Penghu Islands using underwater diving visual censuses for seven years after the 2008 event. In total, 62 samples containing 24,278 individuals belonging to 277 species were recorded in the surveys. These data can provide information to ecologists and fisheries managers about how cold intrusion affected marine fishes and how much time the recovery of fishery resources is needed.<br>
DOI: 10.6084/m9.figshare.11605077.v1
title: A time series dataset of coastal fish community following a cold intrusion event in the Penghu Islands, Taiwan

description: Understanding variation of a community help establish useful mechanisms to mitigate the impacts of a disturbance. In late January and February 2008, there was a high mortality of fishes in the seas surrounding the coasts of the Penghu Islands in Taiwan due to an extreme low seawater temperature event. Here, we describe a time series dataset of fish communities at eight sampling stations along the coasts of the Penghu Islands using underwater diving visual censuses for seven years after the 2008 event. In total, 62 samples containing 24,278 individuals belonging to 277 species were recorded in the surveys. These data can provide information to ecologists and fisheries managers about how cold intrusion affected marine fishes and how much time the recovery of fishery resources is needed.<br>
DOI: 10.6084/m9.figshare.11605068
title: CP_Personality_Ldrshp_Data.sav

description: In a between-subjects experiment, we examined whether employees’ engagement in the two forms of contextual performance (interpersonal facilitation and job dedication) affected inferences about their personality traits and ratings of their leadership emergence and effectiveness. We also examined whether the effect of interpersonal facilitation on perceived agreeableness, and of agreeableness on leadership emergence, were moderated by target gender. As predicted, extraversion and agreeableness mediated the relationship between interpersonal facilitation and leadership emergence, though no effects of target gender emerged. Contrary to predictions, conscientiousness did not mediate the relationship between target job dedication and leadership effectiveness. Ultimately, by performing interpersonal facilitation, women and men employees may be able to increase others’ confidence in their potential as leaders through personality inferences
DOI: 10.6084/m9.figshare.11605068.v1
title: CP_Personality_Ldrshp_Data.sav

description: In a between-subjects experiment, we examined whether employees’ engagement in the two forms of contextual performance (interpersonal facilitation and job dedication) affected inferences about their personality traits and ratings of their leadership emergence and effectiveness. We also examined whether the effect of interpersonal facilitation on perceived agreeableness, and of agreeableness on leadership emergence, were moderated by target gender. As predicted, extraversion and agreeableness mediated the relationship between interpersonal facilitation and leadership emergence, though no effects of target gender emerged. Contrary to predictions, conscientiousness did not mediate the relationship between target job dedication and leadership effectiveness. Ultimately, by performing interpersonal facilitation, women and men employees may be able to increase others’ confidence in their potential as leaders through personality inferences
DOI: 10.6084/m9.figshare.11605047
title: Piana et al. Seed removal in urban and rural forests. Functional Ecology.

description: Data and R code.<b> </b>Evidence of functional shifts in urban ecology: temporal dynamics of seed removal in urban and rural forests
DOI: 10.6084/m9.figshare.11605047.v1
title: Piana et al. Seed removal in urban and rural forests. Functional Ecology.

description: Data and R code.<b> </b>Evidence of functional shifts in urban ecology: temporal dynamics of seed removal in urban and rural forests
DOI: 10.6084/m9.figshare.11604708
title: fashion_mnist.zip

description: A learning curve dataset on OpenML data providing many statistics such as loss, accuracy, configuration, global and loca gradient statistics.<br>
DOI: 10.6084/m9.figshare.11604705
title: six_datasets_lw.zip

description: A learning curve dataset on OpenML data providing many statistics such as loss, accuracy, configuration, global and loca gradient statistics.<br>
DOI: 10.6084/m9.figshare.11604597
title: A gold standard for polarity of emotions of software developers in GitHub

description: Manually annotated gold standard for emotion polarity. The dataset contains over 7,000 documents including GitHub pull request and commit comments. <br>Please, cite the following paper if you wish to use this dataset for your own research: N. Novielli, F. Calefato, D. Dongiovanni, D. Girardi, F. Lanubile (2020). 'Can We Use SE-specific Sentiment Analysis Tools in a Cross-Platform Setting?'. In Proceedings of the 17th International Conference on Mining Software Repositories (MSR 2020). <br>
DOI: 10.6084/m9.figshare.11604588
title: FSII (2020 version) - Continent

description: The collection contains Forest Structural Integrity Index data for the Tropical and Subtropical Moist Broadleaf Forests Biome. The collection is updated from the data provided in Hansen, A. et al. Global humid tropics forest structural condition and forest structural integrity maps. Scientific Data 6, 232, doi:10.1038/s41597-019-0214-3 (2019). Loss year extends to 2018. The spatial extent was expanded to the full biome.
DOI: 10.6084/m9.figshare.11604576
title: TCR repertoires in human CD4+ T cell subsets: Effector/memory subsets, TCR alpha & TCR beta chain sequencing

description: TCR repertoire datasets for sorted helper T cell subsets. <br>Includes metadata and preprocessed clonesets for eight sorted effector/memory T cell subsets: Tfh, Th1, Th17, Th1-17, Th22, Th2, Th2a, Treg. CD4+ T cell subsets were sorted from 5 healthy donors PBMC samples. Each sample is presented in two txt files: TCR alpha cloneset file and a separate TCR beta cloneset file. <br>Raw sequencing fastq data was processed with using MIGEC v.1.2.9 (Quality: threshold 3 different UMI sequences for each CDR3-containing clonotype), aligned with MiXCR v.2.1.1. In-frame TCR CDR3 repertoires were extracted with VDJtools v. 1.2.1. Cloneset tables are in VDJtools software format: tab-delimited text files.<br>
DOI: 10.6084/m9.figshare.11604576.v1
title: TCR repertoires in human CD4+ T cell subsets: Effector/memory subsets, TCR alpha & TCR beta chain sequencing

description: TCR repertoire datasets for sorted helper T cell subsets. <br>Includes metadata and preprocessed clonesets for eight sorted effector/memory T cell subsets: Tfh, Th1, Th17, Th1-17, Th22, Th2, Th2a, Treg. CD4+ T cell subsets were sorted from 5 healthy donors PBMC samples. Each sample is presented in two txt files: TCR alpha cloneset file and a separate TCR beta cloneset file. <br>Raw sequencing fastq data was processed with using MIGEC v.1.2.9 (Quality: threshold 3 different UMI sequences for each CDR3-containing clonotype), aligned with MiXCR v.2.1.1. In-frame TCR CDR3 repertoires were extracted with VDJtools v. 1.2.1. Cloneset tables are in VDJtools software format: tab-delimited text files.<br>
DOI: 10.6084/m9.figshare.11604489
title: Supplementary Material for: Intestinal Mucosal and Serosal Microcirculation at the Planned Anastomosis during Abdominal Surgery

description: <b><i>Introduction:</i></b> Intestinal blood flow is often named as a key factor in the pathophysiology of anastomotic leakage. The distribution between mucosal and serosal microperfusion during surgery remains to be elucidated. <b><i>Objective:</i></b> The aim of this study was to assess if the mucosal microcirculation of the intestine is more vulnerable to a surgical hit than the serosal microcirculation during surgery. <b><i>Methods:</i></b> In an observational cohort study (<i>n</i> = 9 patients), the microcirculation of the bowel serosa and mucosa was visualized with incident dark-field imaging during surgery. At the planned anastomosis, the following microcirculatory parameters were determined: microvascular flow index (MFI), percentage of perfused vessels (PPV), perfused vessel density (PVD), and total vessel density (TVD). Data are presented as median (interquartile range [IQR]). <b><i>Results:</i></b> Perfusion parameters and vessel density were significantly higher for the mucosa than the serosal microcirculation at the planned site for anastomosis or stoma. Mucosal MFI was 3.00 (IQR 3.00–3.00) compared to a serosal MFI of 2.75 (IQR 2.21–2.94), <i>p</i> = 0.03. The PPV was 99% (IQR 98–100) versus 92% (IQR 66–94), <i>p</i> = 0.01. The TVD was 16.77 mm/mm<sup>2</sup> (IQR 13.04–18.01) versus 10.42 mm/mm<sup>2</sup> (IQR 9.36–11.81), <i>p</i> = 0.01, and the PVD was 15.44 mm/mm<sup>2</sup> (IQR 13.04–17.78) versus 9.02 mm/mm<sup>2</sup> (IQR 6.43–9.43), <i>p</i> = 0.01. <b><i>Conclusions:</i></b> The mucosal microcirculation was preserved, while lower perfusion of the serosa was found at the planned anastomosis or stoma during surgery. Further research is needed to link our observations to the clinically relevant endpoint of anastomotic leakage.
DOI: 10.6084/m9.figshare.11604489.v1
title: Supplementary Material for: Intestinal Mucosal and Serosal Microcirculation at the Planned Anastomosis during Abdominal Surgery

description: <b><i>Introduction:</i></b> Intestinal blood flow is often named as a key factor in the pathophysiology of anastomotic leakage. The distribution between mucosal and serosal microperfusion during surgery remains to be elucidated. <b><i>Objective:</i></b> The aim of this study was to assess if the mucosal microcirculation of the intestine is more vulnerable to a surgical hit than the serosal microcirculation during surgery. <b><i>Methods:</i></b> In an observational cohort study (<i>n</i> = 9 patients), the microcirculation of the bowel serosa and mucosa was visualized with incident dark-field imaging during surgery. At the planned anastomosis, the following microcirculatory parameters were determined: microvascular flow index (MFI), percentage of perfused vessels (PPV), perfused vessel density (PVD), and total vessel density (TVD). Data are presented as median (interquartile range [IQR]). <b><i>Results:</i></b> Perfusion parameters and vessel density were significantly higher for the mucosa than the serosal microcirculation at the planned site for anastomosis or stoma. Mucosal MFI was 3.00 (IQR 3.00–3.00) compared to a serosal MFI of 2.75 (IQR 2.21–2.94), <i>p</i> = 0.03. The PPV was 99% (IQR 98–100) versus 92% (IQR 66–94), <i>p</i> = 0.01. The TVD was 16.77 mm/mm<sup>2</sup> (IQR 13.04–18.01) versus 10.42 mm/mm<sup>2</sup> (IQR 9.36–11.81), <i>p</i> = 0.01, and the PVD was 15.44 mm/mm<sup>2</sup> (IQR 13.04–17.78) versus 9.02 mm/mm<sup>2</sup> (IQR 6.43–9.43), <i>p</i> = 0.01. <b><i>Conclusions:</i></b> The mucosal microcirculation was preserved, while lower perfusion of the serosa was found at the planned anastomosis or stoma during surgery. Further research is needed to link our observations to the clinically relevant endpoint of anastomotic leakage.
DOI: 10.6084/m9.figshare.11604432
title: Soil and region details of plots in Sulawesi

description: Soil and region information for 10 0.25 ha forest plots
DOI: 10.6084/m9.figshare.11604432.v1
title: Soil and region details of plots in Sulawesi

description: Soil and region information for 10 0.25 ha forest plots
DOI: 10.6084/m9.figshare.11604369
title: Supplementary Material for: Finasteride and Suicide: A Postmarketing Case Series

description: <b><i>Background:</i></b> In 2011, depression was added to the product labeling of finasteride in the USA. The US Food and Drug Administration’s Adverse Event Reporting System database contains at least 36 death cases for finasteride. The aim of this study is to characterize the clinical histories and symptoms reported by a series of 6 suicide victims who took finasteride for treatment of androgenic alopecia. <b><i>Methods:</i></b> Medical records and autopsy reports were provided by family members of the cases. Relevant information was extracted according to guidelines for submitting adverse event reports. <b><i>Results:</i></b> An important pattern of symptoms was common among all cases who committed suicide in the setting of finasteride use – insomnia and persistent sexual dysfunction after medication discontinuation. Insomnia and fatigue/tiredness were some of the most debilitating symptoms. Apart from 1 case who had hyperlipidemia, there was no documentation of concomitant medication use with finasteride or any baseline medical or psychiatric diagnoses prior to starting finasteride. The findings of this postmarketing series may not be generalizable to the population of men who committed suicide in the setting of finasteride use due to small sample size and bias. Associations between medication use and symptoms cannot prove causality. <b><i>Conclusion:</i></b> Men under the age of 40 who use finasteride for alopecia are at risk for suicide if they develop persistent sexual adverse effects and insomnia. Further research is needed to establish whether finasteride has a causal relationship to suicide.