cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19311554.v1
title: Additional file 10 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 10: Table S9. Phenotypic and physiological traits, with analysis.
DOI: 10.6084/m9.figshare.19311560
title: Additional file 2 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 2: Table S1. Genes in deletion region in BW827.
DOI: 10.6084/m9.figshare.19311560.v1
title: Additional file 2 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 2: Table S1. Genes in deletion region in BW827.
DOI: 10.6084/m9.figshare.19311563
title: Additional file 3 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 3: Table S2. SNP of 3 types observed in 3 genotypes.
DOI: 10.6084/m9.figshare.19311563.v1
title: Additional file 3 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 3: Table S2. SNP of 3 types observed in 3 genotypes.
DOI: 10.6084/m9.figshare.19311566
title: Additional file 4 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 4: Table S3. Differences in SNP readings between protocols.
DOI: 10.6084/m9.figshare.19311566.v1
title: Additional file 4 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 4: Table S3. Differences in SNP readings between protocols.
DOI: 10.6084/m9.figshare.19311569
title: Additional file 5 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 5: Table S4. GO overrepresentation in sets of genes with SNPs.
DOI: 10.6084/m9.figshare.19311572
title: Additional file 6 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 6: Table S5. Results of differential expression analysis.
DOI: 10.25345/c52v2cb9w
title: MassIVE Reanalysis RMSV000000355.336 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C8orf76 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19311569.v1
title: Additional file 5 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 5: Table S4. GO overrepresentation in sets of genes with SNPs.
DOI: 10.6084/m9.figshare.19311572.v1
title: Additional file 6 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 6: Table S5. Results of differential expression analysis.
DOI: 10.6084/m9.figshare.19311578
title: Additional file 7 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 7: Table S6. DEGs with opposite sign of HT-OT effect between 1 d and 10 d.
DOI: 10.6084/m9.figshare.19311578.v1
title: Additional file 7 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 7: Table S6. DEGs with opposite sign of HT-OT effect between 1 d and 10 d.
DOI: 10.6084/m9.figshare.19311581
title: Additional file 8 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 8: Table S7. GO overrepresentation for sets of DEGs and DRGs.
DOI: 10.6084/m9.figshare.19311581.v1
title: Additional file 8 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 8: Table S7. GO overrepresentation for sets of DEGs and DRGs.
DOI: 10.6084/m9.figshare.19311584.v1
title: Additional file 9 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 9: Table S8. Gibberellin and heat related genes.
DOI: 10.6084/m9.figshare.19311584
title: Additional file 9 of High-throughput sequencing data revealed genotype-specific changes evoked by heat stress in crown tissue of barley sdw1 near-isogenic lines

description: Additional file 9: Table S8. Gibberellin and heat related genes.
DOI: 10.6084/m9.figshare.19311596
title: Additional file 2 of Which evidence-based teaching practices change over time? Results from a university-wide STEM faculty development program

description: Additional file 2. Descriptive statistics of the 14 PORTAAL practices for each department at each time point.
DOI: 10.6084/m9.figshare.19311599
title: Additional file 3 of Which evidence-based teaching practices change over time? Results from a university-wide STEM faculty development program

description: Additional file 3. Average PORTAAL values for each paired course.
DOI: 10.6084/m9.figshare.19311596.v1
title: Additional file 2 of Which evidence-based teaching practices change over time? Results from a university-wide STEM faculty development program

description: Additional file 2. Descriptive statistics of the 14 PORTAAL practices for each department at each time point.
DOI: 10.6084/m9.figshare.19311599.v1
title: Additional file 3 of Which evidence-based teaching practices change over time? Results from a university-wide STEM faculty development program

description: Additional file 3. Average PORTAAL values for each paired course.
DOI: 10.25345/c5z31nq59
title: MassIVE Reanalysis RMSV000000355.340 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, C13orf27 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19311617.v1
title: Additional file 1 of Shifting to a model of donor conception that entails a communication agreement among the parents, donor, and offspring

description: Additional file 1. Findings and Implications of Survey Reports of Gamete Donors, Parents Who Used Donor Gametes, and Offspring Born via Donor Conception. The table provides the authors, their country(ies), survey subjects, and findings and implications regarding the searched and selected surveys of donors, parents, and donor-conceived offspring.
DOI: 10.6084/m9.figshare.19311617
title: Additional file 1 of Shifting to a model of donor conception that entails a communication agreement among the parents, donor, and offspring

description: Additional file 1. Findings and Implications of Survey Reports of Gamete Donors, Parents Who Used Donor Gametes, and Offspring Born via Donor Conception. The table provides the authors, their country(ies), survey subjects, and findings and implications regarding the searched and selected surveys of donors, parents, and donor-conceived offspring.
DOI: 10.25345/c5tb0xx15
title: MassIVE Reanalysis RMSV000000355.342 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SBDS [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5pn8xh06
title: MassIVE Reanalysis RMSV000000355.341 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, NAA10 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5jw86p6t
title: MassIVE Reanalysis RMSV000000355.338 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CLEC4F [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5f47gw1h
title: MassIVE Reanalysis RMSV000000355.339 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, WFIKKN1 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c59c6s275
title: MassIVE Reanalysis RMSV000000355.344 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TMED9 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c51v5bf9n
title: MassIVE Reanalysis RMSV000000355.345 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, CLC [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c55m6283d
title: MassIVE Reanalysis RMSV000000355.343 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, TNFRSF10C [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19311710
title: Additional file 2 of Allele-specific expression reveals genes with recurrent cis-regulatory alterations in high-risk neuroblastoma

description: Additional file 2: Table S1. Results from Allele-Specific Expression (ASE) analysis of RNA-seq data for 96 neuroblastoma samples from TARGET. Table S2. Number of significant (FDR ≤ 0.1 or 10%) and testable (i.e., at least 1 heterozygous site with ≥ 10 reads) samples for neuroblastoma tumors, adrenal gland, and whole-blood tissues for all significant ASE genes. Genes were considered to have neuroblastoma-specific ASE if they met these criteria; a) testable in ≥ 10 neuroblastoma and normal (i.e., adrenal-gland and whole-blood) samples and b) significant in ≥3 neuroblastoma and significant ≤ 1 normal sample. The prefix “r.” indicates the number of samples showing significant ASE and “N.” indicates the number of samples testable for ASE. Table S3. Top 20 Gene Ontology (Biological processes) categories enriched for 1,043 NB-ASE genes. Table S4. SCNA scores for 96 neuroblastoma patient samples. Table S5. Spearman’s correlation between ASE (aRNA) for 1,043 NB-ASE genes and SCNA score for overlapping genomic segments. Table S6. Table of high-impact somatic mutations mapping to NB-ASE genes detected using exome-seq data using Variant Effect Predictor (VEP) in 96 neuroblastoma tumors. Table S7. Spearman’s correlation between ASE (aRNA) and mean promoter methylation for 1,043 NB-ASE genes. Table S8. Spearman’s correlation between ASE (aRNA) and gene expression (z-score normalized Fragments per Kilobase Per Million mapped) for 1,043 NB-ASE genes.
DOI: 10.6084/m9.figshare.19311710.v1
title: Additional file 2 of Allele-specific expression reveals genes with recurrent cis-regulatory alterations in high-risk neuroblastoma

description: Additional file 2: Table S1. Results from Allele-Specific Expression (ASE) analysis of RNA-seq data for 96 neuroblastoma samples from TARGET. Table S2. Number of significant (FDR ≤ 0.1 or 10%) and testable (i.e., at least 1 heterozygous site with ≥ 10 reads) samples for neuroblastoma tumors, adrenal gland, and whole-blood tissues for all significant ASE genes. Genes were considered to have neuroblastoma-specific ASE if they met these criteria; a) testable in ≥ 10 neuroblastoma and normal (i.e., adrenal-gland and whole-blood) samples and b) significant in ≥3 neuroblastoma and significant ≤ 1 normal sample. The prefix “r.” indicates the number of samples showing significant ASE and “N.” indicates the number of samples testable for ASE. Table S3. Top 20 Gene Ontology (Biological processes) categories enriched for 1,043 NB-ASE genes. Table S4. SCNA scores for 96 neuroblastoma patient samples. Table S5. Spearman’s correlation between ASE (aRNA) for 1,043 NB-ASE genes and SCNA score for overlapping genomic segments. Table S6. Table of high-impact somatic mutations mapping to NB-ASE genes detected using exome-seq data using Variant Effect Predictor (VEP) in 96 neuroblastoma tumors. Table S7. Spearman’s correlation between ASE (aRNA) and mean promoter methylation for 1,043 NB-ASE genes. Table S8. Spearman’s correlation between ASE (aRNA) and gene expression (z-score normalized Fragments per Kilobase Per Million mapped) for 1,043 NB-ASE genes.
DOI: 10.6084/m9.figshare.19311718
title: Additional file 1 of The effect of externally attached archival data loggers on the short-term dispersal behaviour and migration speed of European eel (Anguilla anguilla L.)

description: Additional file 1:Table S1. This table shows the IDs of the eleven retrieved PDSTs and whether or not the eels had an internally implanted acoustic transmitter. The release and pop-off date time is indicated, as well as the time the tag was attached to the eel.
DOI: 10.6084/m9.figshare.19311718.v1
title: Additional file 1 of The effect of externally attached archival data loggers on the short-term dispersal behaviour and migration speed of European eel (Anguilla anguilla L.)

description: Additional file 1:Table S1. This table shows the IDs of the eleven retrieved PDSTs and whether or not the eels had an internally implanted acoustic transmitter. The release and pop-off date time is indicated, as well as the time the tag was attached to the eel.
DOI: 10.25345/c5sf2md35
title: MassIVE Reanalysis RMSV000000355.347 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, H1FNT [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5x34mt4k
title: MassIVE Reanalysis RMSV000000355.350 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, OBFC2B [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5d50g00r
title: MassIVE Reanalysis RMSV000000355.349 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, ZNF366 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5hx15s45
title: MassIVE Reanalysis RMSV000000355.348 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, SRSF5 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.25345/c5np1wk9d
title: MassIVE Reanalysis RMSV000000355.351 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of Bioplex AP-MS Dataset for Library Construction, DNAJC17 [launched by aea60c3352304ba6ab67140f655b6785]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.6084/m9.figshare.19311758
title: Additional file 2 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 2: LC-MS/MS result of NIID and control brains.
DOI: 10.6084/m9.figshare.19311755.v1
title: Additional file 1 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 1: LC-MS/MS result of HD190QG mouse brains.
DOI: 10.6084/m9.figshare.19311755
title: Additional file 1 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 1: LC-MS/MS result of HD190QG mouse brains.
DOI: 10.6084/m9.figshare.19311761.v1
title: Additional file 3 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 3: Whole exome sequencing data.
DOI: 10.6084/m9.figshare.19311758.v1
title: Additional file 2 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 2: LC-MS/MS result of NIID and control brains.
DOI: 10.6084/m9.figshare.19311761
title: Additional file 3 of Hornerin deposits in neuronal intranuclear inclusion disease: direct identification of proteins with compositionally biased regions in inclusions

description: Additional file 3: Whole exome sequencing data.