cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14751661
title: Neurobehavioral phenotypes in the pan-neuronal GAL4 zebrafish line Tg(elavl3:KalTA4)

description: The Gal4/UAS system is used across model organisms to overexpress target genes in precise cell types and relies on generating transgenic Gal4 driver lines. In zebrafish, the Tg(elavl3:KalTA4) (HuC) line drives robust expression in neurons. We observed an increased prevalence of swim bladder defects in Tg(elavl3:KalTA4) zebrafish larvae compared to wildtype siblings, which prompted us to investigate whether transgenic larvae display additional neurobehavioral phenotypes. Tg(elavl3:KalTA4) larvae showed alterations in brain activity, brain morphology, and behavior, including increased hindbrain size and reduced activity of the cerebellum. Bulk RNA-seq analysis revealed massive dysregulation of the transcriptome and suggested an increased ratio of neuronal progenitor cells compared to differentiated neurons. To understand whether these phenotypes derive from Gal4 toxicity or from positional effects related to transgenesis, we used economical low-pass whole genome sequencing to map the Tol2-mediated insertion site to chromosome eight. Reduced expression of the neighboring gene gadd45ga, a known cell cycle regulator, is consistent with increased proliferation and suggests a role for positional effects. Challenges with creating alternative pan-neuronal lines include the length of the elavl3 (HuC) promoter (9 kb) and random insertion using traditional transgenesis methods. To facilitate the generation of alternative lines, we cloned five neuronal promoters (atp6v0cb, elavl3, rtn1a, sncb, and stmn1b) ranging from 1.7 kb to 4.3 kb and created KalTA4 lines using Tol2 and the phiC31 integrase-based pIGLET system. Our study highlights the importance of using appropriate genetic controls and establishes a roadmap for identifying positional effects in new transgenic lines.
DOI: 10.5281/zenodo.16762444
title: Neurobehavioral phenotypes in the pan-neuronal GAL4 zebrafish line Tg(elavl3:KalTA4)

description: The Gal4/UAS system is used across model organisms to overexpress target genes in precise cell types and relies on generating transgenic Gal4 driver lines. In zebrafish, the Tg(elavl3:KalTA4) (HuC) line drives robust expression in neurons. We observed an increased prevalence of swim bladder defects in Tg(elavl3:KalTA4) zebrafish larvae compared to wildtype siblings, which prompted us to investigate whether transgenic larvae display additional neurobehavioral phenotypes. Tg(elavl3:KalTA4) larvae showed alterations in brain activity, brain morphology, and behavior, including increased hindbrain size and reduced activity of the cerebellum. Bulk RNA-seq analysis revealed massive dysregulation of the transcriptome and suggested an increased ratio of neuronal progenitor cells compared to differentiated neurons. To understand whether these phenotypes derive from Gal4 toxicity or from positional effects related to transgenesis, we used economical low-pass whole genome sequencing to map the Tol2-mediated insertion site to chromosome eight. Reduced expression of the neighboring gene gadd45ga, a known cell cycle regulator, is consistent with increased proliferation and suggests a role for positional effects. Challenges with creating alternative pan-neuronal lines include the length of the elavl3 (HuC) promoter (9 kb) and random insertion using traditional transgenesis methods. To facilitate the generation of alternative lines, we cloned five neuronal promoters (atp6v0cb, elavl3, rtn1a, sncb, and stmn1b) ranging from 1.7 kb to 4.3 kb and created KalTA4 lines using Tol2 and the phiC31 integrase-based pIGLET system. Our study highlights the importance of using appropriate genetic controls and establishes a roadmap for identifying positional effects in new transgenic lines.
DOI: 10.15468/dl.v4hbuu
title: Occurrence Download

description: A dataset containing 219821 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ramphastos ambiguus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 219821 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025695-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12667298
title: Make Data Count training labels
DOI: 10.15468/dl.dqjk7q
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ramphastos cuvieri)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 55 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025726-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgw9vv
title: Occurrence Download

description: A dataset containing 171 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Synopsis of the Snakes of the Philippines A Synthesis of Data from Biodiversity Repositories, Field Studies, and the Literature"
 ]
}

 The dataset includes 171 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025725-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16761110
title: Doppler Holography Measurements of the Eye Fundus in a Volunteer – May 27, 2025

description: Raw interferometric data (.holo files) were acquired at 37 kHz using a real-time Doppler holography prototype. The system enabled dynamic and quantitative retinal angiography of the fundus in both eyes of a volunteer. Imaging was conducted under near-infrared illumination at 852 nm, with an incident optical power of 5 mW on the eye, in accordance with ocular safety standards (ISO 15004-2:2024 Ophthalmic instruments - Fundamental requirements and test methods). Image rendering and analysis software : DigitalHolography/Holovibes (v14.10.3), DigitalHolography/HoloDoppler (v2.8), DigitalHolography/EyeFlow (v2.8.2).
DOI: 10.5281/zenodo.16761111
title: Doppler Holography Measurements of the Eye Fundus in a Volunteer – May 27, 2025

description: Raw interferometric data (.holo files) were acquired at 37 kHz using a real-time Doppler holography prototype. The system enabled dynamic and quantitative retinal angiography of the fundus in both eyes of a volunteer. Imaging was conducted under near-infrared illumination at 852 nm, with an incident optical power of 5 mW on the eye, in accordance with ocular safety standards (ISO 15004-2:2024 Ophthalmic instruments - Fundamental requirements and test methods). Image rendering and analysis software : DigitalHolography/Holovibes (v14.10.3), DigitalHolography/HoloDoppler (v2.8), DigitalHolography/EyeFlow (v2.8.2).
DOI: 10.15468/dl.u3gj2m
title: Occurrence Download

description: A dataset containing 1993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Falco femoralis"
 ]
}

 The dataset includes 1993 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025727-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8qrw8m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mesembriomys macrurus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025729-250802193616735/datasets/export for details.
DOI: 10.15468/dl.7kwu8j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mesembriomys macrurus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025730-250802193616735/datasets/export for details.
DOI: 10.15468/dl.vmyrkj
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Farlowella rugosa)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 47 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025728-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v6ttcu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mesembriomys macrurus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025731-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16762407
title: Replication package and dataset for "An Interpretable Measure of Tourism Resilience from Network Diversity and Hierarchy"

description: This repository contains all data, code and replication material for the article : D. Sierra-Porta, Oscar Díaz Ramírez and Mairene Tobón Ospino (2025). “An Interpretable Measure of Tourism Resilience from Network Diversity andHierarchy.” (Under review)  It provides:

* Raw dataset Extranjeros No Residentes (451 613 rows, Jan-2015 – Apr-2025)    — monthly counts of international non-resident arrivals by destination city and country of residence, released by Migración Colombia (OpenData portal).* Clean panels  * `city_month_metrics.csv` – 150-city monthly panel with strength (arrivals), Shannon entropy of origin markets, Katz centrality and residuals.    * `city_resilience_summary.csv` – city-level resilience descriptors (pre-shock diversity, shock-period hierarchisation, quadrant labels).* Analysis notebook    `TourismResilience_Replicable_v2.ipynb` reproduces every figure, table and robustness check reported in the paper.  It relies only on open-source  Python libraries (pandas, networkx, numpy, matplotlib) and executes in < 5 min on a standard laptop.* Figures (PNG, 300 dpi) – resilience plane, quadrant zooms, robustness scatter.  * Supplementary tables – monthly regression diagnostics, city lists by quadrant, interquartile-threshold comparison.

The materials enable full replication of the study’s two-window resilience framework (2018–2019 baseline, 2020–2021 shock) and can be adapted to other countries by replacing the raw arrivals table.
DOI: 10.5281/zenodo.16762408
title: Replication package and dataset for "An Interpretable Measure of Tourism Resilience from Network Diversity and Hierarchy"

description: This repository contains all data, code and replication material for the article : D. Sierra-Porta, Oscar Díaz Ramírez and Mairene Tobón Ospino (2025). “An Interpretable Measure of Tourism Resilience from Network Diversity andHierarchy.” (Under review)  It provides:

* Raw dataset Extranjeros No Residentes (451 613 rows, Jan-2015 – Apr-2025)    — monthly counts of international non-resident arrivals by destination city and country of residence, released by Migración Colombia (OpenData portal).* Clean panels  * `city_month_metrics.csv` – 150-city monthly panel with strength (arrivals), Shannon entropy of origin markets, Katz centrality and residuals.    * `city_resilience_summary.csv` – city-level resilience descriptors (pre-shock diversity, shock-period hierarchisation, quadrant labels).* Analysis notebook    `TourismResilience_Replicable_v2.ipynb` reproduces every figure, table and robustness check reported in the paper.  It relies only on open-source  Python libraries (pandas, networkx, numpy, matplotlib) and executes in < 5 min on a standard laptop.* Figures (PNG, 300 dpi) – resilience plane, quadrant zooms, robustness scatter.  * Supplementary tables – monthly regression diagnostics, city lists by quadrant, interquartile-threshold comparison.

The materials enable full replication of the study’s two-window resilience framework (2018–2019 baseline, 2020–2021 shock) and can be adapted to other countries by replacing the raw arrivals table.
DOI: 10.15468/dl.dmg3vj
title: Occurrence Download

description: A dataset containing 2998 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.91095 63.11031,-81.45185 62.5563,-81.09222 55.29966,-81.90976 45.72632,-80.68345 44.76704,-79.50042 43.31936,-77.29893 43.37185,-76.82977 43.65974,-74.88092 44.97654,-71.56065 44.97654,-70.47795 45.7625,-69.15569 46.77355,-63.95448 47.41176,-62.57775 46.72892,-61.45737 46.89977,-60.18031 47.47372,-59.61517 48.42782,-56.16487 51.63573,-53.4832 53.95156,-62.08612 60.22671,-67.15384 61.26671,-72.12021 62.8802,-78.91095 63.11031))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Reynoutria japonica"
 ]
}

 The dataset includes 2998 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025735-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngp9k2
title: Occurrence Download

description: A dataset containing 3384 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Falco peregrinus"
 ]
}

 The dataset includes 3384 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025733-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w4eb5p
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-120.45780 33.96508,-120.13779 33.96508,-120.13779 34.09303,-120.45780 34.09303,-120.45780 33.96508))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Acmispon dendroideus veatchii",
 "Year 1959-2024"
 ]
}

 The dataset includes 47 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025736-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3r5rc
title: Occurrence Download

description: A dataset containing 35182 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ramphastos dicolorus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 35182 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025732-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zd25p
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mesembriomys macrurus)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025737-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16762342
title: Raw data for the study on the absence of gluten-related effects on body composition and inflammation in nonceliac fitness practitioners

description: This dataset contains the fully anonymized raw data collected for the observational study titled “No differential effect on body composition or inflammation in the presence or deprivation of gluten in the diet of nonceliac fitness practitioners. Corollary remarks on their approach to health management.”

It includes individual measurements of body mass index, body composition parameters, and inflammatory markers from 53 amateur non-celiac fitness practitioners, assessed before and after a 3-month gluten-free or gluten-containing diet combined with structured physical activity.

The dataset is provided as a single Excel file (`raw_data_full.xlsx`). It supports the statistical analyses and findings reported in the corresponding manuscript, currently submitted to a peer-reviewed journal in its revised form. The dataset does not contain any personally identifiable information.
DOI: 10.5281/zenodo.16762343
title: Raw data for the study on the absence of gluten-related effects on body composition and inflammation in nonceliac fitness practitioners

description: This dataset contains the fully anonymized raw data collected for the observational study titled “No differential effect on body composition or inflammation in the presence or deprivation of gluten in the diet of nonceliac fitness practitioners. Corollary remarks on their approach to health management.”

It includes individual measurements of body mass index, body composition parameters, and inflammatory markers from 53 amateur non-celiac fitness practitioners, assessed before and after a 3-month gluten-free or gluten-containing diet combined with structured physical activity.

The dataset is provided as a single Excel file (`raw_data_full.xlsx`). It supports the statistical analyses and findings reported in the corresponding manuscript, currently submitted to a peer-reviewed journal in its revised form. The dataset does not contain any personally identifiable information.
DOI: 10.15468/dl.a4gt4h
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mesembriomys macrurus)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025738-250802193616735/datasets/export for details.
DOI: 10.15468/dl.rb7kxn
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-78.91095 63.11031,-81.45185 62.5563,-81.09222 55.29966,-81.90976 45.72632,-80.68345 44.76704,-79.50042 43.31936,-77.29893 43.37185,-76.82977 43.65974,-74.88092 44.97654,-71.56065 44.97654,-70.47795 45.7625,-69.15569 46.77355,-63.95448 47.41176,-62.57775 46.72892,-61.45737 46.89977,-60.18031 47.47372,-59.61517 48.42782,-56.16487 51.63573,-53.4832 53.95156,-62.08612 60.22671,-67.15384 61.26671,-72.12021 62.8802,-78.91095 63.11031))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Reynoutria sachalinensis"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025739-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.