cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/767hdd8rmd
title: The Negative Impact of Covid-19 to Firms: Insights from Serbia Dataset

description: Dataset for the article: Adžić, S., Al-Mansour, J. (2021). The Negative Impact of Covid-19 to Firms: Insights from Serbia. Eastern European Economics. DOI: 10.1080/00128775.2021.1953387. in this article, we analyzed the negative impact of the Covid-19 pandemic on Serbian enterprises. In this exploratory study, we conducted 40 online surveys that consisted of twenty Likert-scale questions with top and middle managers working in public and private Serbian enterprises. The output of various statistical tests ended in the development of the Negative Impact of Covid-19 on a Firm scale. The study determined which internal strengths and weaknesses, as well as external opportunities and threats, have had the strongest negative impacts on the competitiveness of Serbian companies during the pandemic.
DOI: 10.17632/wmg5vd85bx
title: Effect of the aeration system on water quality parameters in a biofloc system

description: Twelve water quality parameters are included: temperature, oxygen concentration, oxygen saturation, pH, total dissolved solids, electrical conductivity, ammonium, nitrite, nitrate, alkalinity, orthophosphates and settleable solids. Data were collected for 12 weeks from 6 tanks, where 3 tanks were equipped with splash aeration equipment and 3 tanks were equipped with blower equipment, each aerator with 1 hp of power. 
Biofloc technology (BFT) is an alternative for intensive production of aquatic organisms. During BFT implementation, aeration systems are mandatory. The objective of 
this work was to evaluate the effects of two aeration types: splash (SPL) and blower (BLW) on the productive performance and water quality parameters during 90 days in the juvenile phase of red tilapia (Oreochromis sp.) grown in a commercial BFT farm. No differences were observed on zootechnical parameters, while water quality parameters showed that dissolved oxygen and oxygen saturation were significantly higher for the SPL group, and therefore are more adequate for the production of red tilapia.
DOI: 10.6084/m9.figshare.28297211.v1
title: SOSU.data

description: This is the underlying dataset for research on suicide prevention education for nursing assistant students. The dataset contains the pre-and post measurements of two questionnaries; the revised facts on suicide quiz and the willingness to intervene against suicide questionnarie.
DOI: 10.6084/m9.figshare.4564819
title: PDE1A polymorphism contributes to the susceptibility of nephrolithiasis

description: We here provide evidence
for a monogenic cause of nephrolithiasis, or kidney stones, based on an
association of a polymorphism in the <i>PDE1A</i>
gene. This variant was detected through whole-exome analysis of ten members of
an affected family, as well as a case–control study of a validation cohort
including over 2000 patients at our hospital.
DOI: 10.17632/w7m95wwrb5
title: Mujoco demonstrates for Imitation learning

description: This dataset can be used for studying imitation learning for robot control.
DOI: 10.6084/m9.figshare.10075574.v1
title: Existing physiologically-based kinetic (PBK) models, identified via PubMed searches (with associated EndNote library)

description: For the safety assessment of chemicals, it is important to consider both the intrinsic toxicity and the internal exposure of the chemical. PBK models (also referred to as physiologically-based pharmacokinetic/toxicokinetic (PBPK/TK) models) can provide detailed information on the time-course of chemicals in different organs of the body. This information can be incorporated as part of the safety assessment process and/or used to support read-across predictions during product development. Model parameters and chemical information taken from existing PBK models for “source” chemicals (i.e. those with the relevant data) can be used to inform PBK model development for “target” chemicals (i.e. those lacking the relevant data). This approach was demonstrated successfully by Lu et al (2016; PLOS Computational Biology; DOI:10.1371/journal.pcbi.1004495) who developed a “Knowledgebase” of existing PBK models for 307 unique chemicals. This Knowledgebase included chemical identities, species, life-stage, organs and basic physico-chemical properties of the chemicals (along with the list of published articles and abstracts). Appropriate analogues to use as source chemicals were selected using physico-chemical property information, demonstrating the utility of the approach to assist development of new PBK models. The first step in this process is to identify the existing PBK models. Whilst the original “Knowledgebase” comprised publications from 1977 – 2013, many more models have been published since. More recent research at the United States Environment Protection Agency (US EPA), has involved identification of additional published PBK models, obtained through a search of the PubMed database. The resulting Excel spreadsheet lists existing PBK models (identified via PubMed) for 1,290 individual chemical entities, as recorded in 972 separate publications (up to 2016). The data available in the Excel spreadsheet include chemical name, additional information on the chemical (e.g. isomer, metabolite of another chemical, administration as a mixture etc), species, gender, life-stage, administration route, compartments/organs considered and the PubMed ID number. The associated Endnote library gives the full details of all the references obtained via PubMed (including abstracts); PBK models of interest can be searched via their PubMed ID number. This information is provided as an indication of models available, it does not represent an exhaustive search of all existing models.
DOI: 10.6084/m9.figshare.22666192.v1
title: Batocera_horsfieldi.gb

description: 基于高通量测序完整的云斑天牛（Batocera_horsfieldi）线粒体基因GB文件
DOI: 10.6084/m9.figshare.28852589.v2
title: IBAS Vol I.docx (telda).revisi4.pdf

description: This study analyzes the translation of the word <i>parthenos</i> in Isaiah 7:14, focusing on the differences between the Septuagint and the Indonesian Bible Society (LAI) translation. In the Septuagint, <i>parthenos</i> is translated as "virgin," which has influenced Christian understanding of the Virgin Birth, while the LAI translation uses the phrase "young woman," which is closer to the original Hebrew meaning of <i>almah</i>. These translation differences potentially lead to significant theological implications, particularly in the context of church teachings in Indonesia, where religious pluralism plays a significant role.This research employs a qualitative approach using exegetical and theological methods to understand the theological impact of these translation differences. The data used includes Isaiah 7:14 in its Hebrew, Septuagint, and LAI versions, as well as relevant theological literature. A comparison of translations was conducted to identify differences in meaning, followed by a critical analysis of the theological and cultural implications.The results show that the more neutral LAI translation can lead congregations to a more historical-contextual interpretation, although it may weaken the connection to the traditional doctrine of the Virgin Birth. This study opens further discussion on the impact of Bible translations on the development of local theology in Indonesia and encourages churches to be more critical in t eaching doctrines based on translated texts.
DOI: 10.6084/m9.figshare.5497930.v1
title: General_population_EQ-5D-5L_EQ-5D-3L_DC.dta

description: the dataset contains completed paired comparisons tasks (discrete choice) for EQ-5D-5L and EQ-5D-3L, overall there are 1874 respondents from the Dutch general population completed 16 DC tasks in the 5L, and 1824 general population respondents completed the 3L format.
DOI: 10.6084/m9.figshare.12163854.v2
title: GTT-1-protein-319.dcdWW domain trajectories

description: Trajectories of ww domainTrajectories dataTrajectories of WW domain
DOI: 10.6084/m9.figshare.23504046.v1
title: HMAP Dataset 18: Colombian Caribbean Sea

description: The study area is the Columbian Caribbean Sea (approximately 13oN to 8oN; 71oW to 77oW), a diverse marine and coastal region that has a tropical climate. It contains upwelling systems to the north, and estuarine ecosystems to the south, with reef formations close to the coasts of the mainland and offshore islands. Although biodiversity is high in terms of species, stocks are small and sustain only one industrial fishery – shrimp. Artisanal fisheries, nevertheless, are widely practised and intensive in character. Within this area, the research is designed to elucidate the relationship between fishing effort and catches during the 1970-2001 period.
DOI: 10.17632/m4dt3z68s5
title: Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders. Yu et al.

description: DS1 represents the untargeted LC-MS measurement of lipidome composition of prefrontal cortex gray matter in 452 samples from 396 cognitively healthy individuals with ages spanning 100 years, as well as 16 autism, 26 schizophrenia and 5 Down syndrome patients. Measured using Orbitrap-XL, Thermo-Fisher, Germany, in both positive and negative ionization modes. Peak calling was done using Progenesis QI for data of positive and negative ionization modes separately. Peaks detected in at least 80% of the non-pooled samples and 90% of the pooled samples were retained. Log10-transformed peak intensities were normalized using quantile normalization. PFC transcriptomes of 72 selected individuals from the 396 ones measured in DS1 were measured by Illumina HiSeq 4000. The paired-ended reads were mapped to human genome hg38 using HiSat2, with reads overlapping with protein-coding genes annotated in GENCODE v24 using htseq-count and normalized using DESeq2. DS2 represents PFC lipidome measurement of 33 autism patients with their transcriptome measured in Liu et al. 2016. Peak calling was done using Progenesis QI with intensities normalized with upper-quartile normalization.
DOI: 10.6084/m9.figshare.25897714.v1
title: Fig 1 + Fig S3 - Dye Optimisation

description: PDF data summaries (generated using the NanoFCM NanoAnalyzer) supporting the manuscript "Shining a Light on Fluorescent EV Dyes: Evaluating Efficacy, Specificity, and Suitability by Nano-Flow Cytometry" by Brealey, et al.Raw data are available upon request.
DOI: 10.6084/m9.figshare.4748278.v1
title: Dynamic occupancy maps for UK butterflies

description: This zipped file contains scripts and associated data for producing dynamic occupancy maps for a sample of UK butterflies using Shiny in R.<br>Alternatively the Shiny app for the dynamic maps can be found at https://ebdennis.shinyapps.io/DynMap/<br>See 'Efficient occupancy model-fitting for extensive citizen-science data' (Dennis et al, PLOS ONE, 2017) for further details.
DOI: 10.17632/7vm7xskfg4
title: PotatoCare: Deep learning based potato disease dataset

description: The dataset consists of 10,117 images categorized into 10 classes, representing different potato diseases and healthy samples. The classes include Black Scurf (49 images), Blackleg (47), Blackspot Bruising (770), Brown Rot (105), Common Scab (60), Dry Rot (1,355), Healthy Potatoes (815), Miscellaneous (73), Pink Rot (57), and Soft Rot (560). The dataset was compiled from various sources and merged to create a diverse and representative collection of images. However, the distribution of images across classes is imbalanced, with some diseases like Dry Rot and Blackspot Bruising having significantly more samples than others like Blackleg and Pink Rot. This dataset is useful for training deep learning models for automated disease detection in potatoes, enabling early identification and reducing the risk of crop damage. The diverse nature of the dataset enhances model generalizability, making it suitable for real-world agricultural applications.
DOI: 10.6084/m9.figshare.12824399.v1
title: Swedish IKEA Catalogs 1950-2021

description: This dataset contains basic metadata (year, number of pages, PDF URL) for all Swedish IKEA catalogs (1950-2021). The dataset was manually created from content on ikeacatalogues.ikea.com. The external PDFs can be used under the condition specified by IKEA.<br>The files are also available on the Internet Archive in case they would become unavailable at ikea.com. <br>
DOI: 10.6084/m9.figshare.2066037.v17
title: MNI space average T1-weighted MRI of the brain with anatomical labels.

description: MNI space average brain with associated labels. Many of these labels are lifted from Chris Rorden's micron.<br>parc268 is derived from: http://www.nature.com/neuro/journal/v18/n11/abs/nn.4135.html<br>yeo is from: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3174820/
DOI: 10.6084/m9.figshare.28645046.v2
title: What does colonisation tell us? Revisiting the functional outcomes of root colonisation by arbuscular mycorrhizal

description: Data associated with study exploring relationships between colonisation of roots by arbuscular mycorrhizal (AM) fungi and the host plant growth, phosphorus, and phenolic responses to the symbiosis.<br><b>Data.csv</b> file contains plant growth, phosphorus, phenolic data alongside root-length colonised data.<b>colonisation_plots.R</b> file contains script for generating plots in R.
DOI: 10.6084/m9.figshare.28811102.v1
title: Supplementary code for PCA-3DSIM

description: Supplementary code for PCA-3DSIM
DOI: 10.17632/6tjkgtfnky
title: PMSM_FOC dataset

description: This dataset simulates the behavior of a 3-phase PMSM motor controlled using the FOC scheme, the signal values of the rotating DQ frame voltage and current are gathered both for the reference and measured signal. The dataset also includes the signal value of the reference and measured speed which is useful because it provides a valuable tool for the development and validation for machine learning motor control. It contains data generated for both real life scenarios and corner conditions to stress to the maximum the linear controllers (PID) present in the FOC scheme.
DOI: 10.6084/m9.figshare.29046284.v1
title: TCGA-HNSSC Clinical and Mutation combination

description: Head and neck squamous cell carcinoma (HNSCC) poses considerable clinical challenges due to its involvement with critical tissues in the head and neck. Despite a high five-year survival rate of 68.5%, it remains a highly prevalent cancer worldwide, necessitating enhanced risk assessment and individualized treatment strategies. This study leverages missense variant data from 492 HNSCC patients in The Cancer Genome Atlas to address these needs. To facilitate a more nuanced approach to personalized risk assessment, we employed a fuzzy logic-based methodology to integrate results from multiple survival analyses. The proposed model combines a Fuzzy Inference System, Convolutional Neural Networks, Random Survival Forests, and Cox Proportional Hazards regression models to identify and evaluate risk factors. We evaluated the model in terms of accuracy, sensitivity, specificity, F1 score, and time-dependent area under the curve. The fuzzy-based survival analysis model had an average accuracy of 92.04%, effectively classifying and identifying missense variants linked to HNSCC mortality. By integrating diverse survival analyses, this study advances personalized medicine in HNSCC, offering valuable insights that could enhance clinical decision-making, optimize treatment strategies, and improve patient outcomes.
DOI: 10.6084/m9.figshare.8206559.v2
title: pen

description: It is the very tip of a ballpoint pen.
DOI: 10.6084/m9.figshare.12382667.v4
title: LUCAS 2018 Copernicus

description: The data published are distributed along with the ESSD manuscript entitled "LUCAS Copernicus 2018: Earth Observation relevant in-situ data on land cover and use throughout the European Union"by Raphaël d’Andrimont, Astrid Verhegghen, Michele Meroni, Guido Lemoine, Peter Strobl, Beatrice Eiselt, Momchil Yordanov, Laura Martinez-Sanchez and Marijn van der Velde.<br>----<br>The repository contains the following files:<br><br> LUCAS_2018_Copernicus_ReadMe.txt : short description of the data repository LUCAS_2018_Copernicus.zip : compressed files containing the dataset LUCAS_2018_Copernicus_attributes.csv : CSV containing the 120 variables including the "POINT_ID" LUCAS_2018_Copernicus_polygons.shp : Shapefile of polygons with the "POINT_ID" attribute LUCAS_2018_Copernicus_polygons.dbf LUCAS_2018_Copernicus_polygons.shx LUCAS_2018_Copernicus_polygons.prj<br> ESSD_create_LUCAS_polygons.Rmd : R markdown script used to generate the data ESSD_manuscript_Tables_and_Figures.Rmd : R markdown script used to generate the figures and tables of the manuscript <br>
DOI: 10.6084/m9.figshare.17702297.v1
title: PRISMA-ScR-Checklist

description: Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) Checklist of the article Computational Thinking and Educational Technology: A Scoping Review of the Literature
DOI: 10.6084/m9.figshare.29154713.v2
title: interparlo.pdf

description: A book to understand the foundations of science and philosophy in Esperanto in the form of a simple story<br>
DOI: 10.6084/m9.figshare.16415907.v1
title: Project data

description: iSALE input parameters, model set-up info, simulation info from Marchi et al (2020) and final crater sizes.<br>
DOI: 10.6084/m9.figshare.17869463.v1
title: Seurat object for the spatial transcriptomic data of sample HCM1406B

description: Seurat object for the spatial transcriptomic data of sample HCM1406B
DOI: 10.6084/m9.figshare.22691113.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.21774746.v1
title: Genomic and transcriptomic feature correlations and linear model results for each chordoma-selective dependency gene

description: An individual table is provided for each dependency gene. Each row represents a dependency–feature pair. dependency: HGNC symbol of dependency; feature_type: type of genomic/transcriptomic feature, i.e., copy number (cn), gene expression (ge), or mutation (mut); feature: name of genomic/transcriptomic feature; feature_rank: rank of genomic/transcriptomic feature, based on absolute correlation with gene dependency; correlation: Pearson correlation coefficient between CERES gene effect for indicated dependency and value of the indicated genomic/transcriptomic feature; lm_slope_estimate: estimate for the slope coefficient of the linear model; lm_slope_se: standard error for the slope coefficient of the linear model; lm_slope_t: <em>t</em> statistic for the slope coefficient of the linear model; lm_slope_p: <em>P</em> value for the slope coefficient of the linear model.
DOI: 10.6084/m9.figshare.24996011.v2
title: Global avian frugivore-fruit trait matching decreases towards the tropics

description: This file has the raw data and R code used to run the analysis in the manuscript "Global avian frugivore-fruit trait matching decreases towards the tropics".
DOI: 10.6084/m9.figshare.29033291.v3
title: R-CRYSTALS with 10 Initial Materials

description: CIF and XYZ data for R-CRYSTALS10 dataset including Ag, Au, CH_3NH_3PbI_3, Fe_2O_3, MoS_2, PbS, SnO_2, SrTiO_3, TiO_2, ZnOhttps://github.com/KurbanIntelligenceLab/R-CRYSTALS
DOI: 10.6084/m9.figshare.27133986.v1
title: Electrical Resistivity Tomography Profiles.zip

description: The zipped files contain the following:All the raw and inverted electrical resistivity tomography profiles measured on Tisza and Maros artificial levees in Hungary. The inversion was done by RES2D INV software.All borehole samples collected from the nineteen boreholes from Tisza and Maros levees, the measured grainsize, water content, and resistivity.
DOI: 10.6084/m9.figshare.28616189.v1
title: <b>The effects, patterns, and predictors of phosphorus addition on terrestrial litter decomposition</b> raw data.xlsx

description: Anthropogenic phosphorus (P) input profoundly affects carbon (C) and nutrient dynamics in terrestrial ecosystems, which poses a threat to soil health and nutrient sustainability. Litter decomposition is crucial for maintaining soil C and nutrient pools, yet there is a significant knowledge gap regarding the effects of anthropogenic P input on terrestrial litter decomposition.To address this, we conducted a global meta-analysis of 731 observations from 261 field studies to investigate the impact of P addition on litter decomposition. Our analysis revealed that P addition increased the activities of β-1,4-glucosidase (BG) and β-1,4-N-acetylglucosaminidase (NAG) during decomposition.This increase in enzyme activity accelerated the degradation of lignin and cellulose and the release of litter C and nitrogen (N). Ultimately, this resulted in a 6.42% increase in litter mass loss. The positive effect of P addition on litter mass loss was further amplified when combined with N addition. The effects of P addition on litter decomposition varied depending on P fertilizer type (e.g., Ca(H2PO4)2, NaH2PO4, and KH2PO4), P addition level (e.g., &lt;5, 5-10, and &gt;10 g P m-2 year-1), experimental duration (e.g., &lt;12, 12-24, and &gt;24 months), and ecosystem type. Model selection analysis indicated that soil pH was the primary predictor driving global-scale litter decomposition in response to P addition. In conclusion, P addition overall accelerated litter decomposition due to increased activities of BG and NAG. However, the patterns varied with N availability, P fertilizer type, P addition level, experimental duration, and ecosystem type. Future studies should thus consider the effects, patterns, and drivers of P addition on litter decomposition when guiding sustainable practices in nutrient management.
DOI: 10.6084/m9.figshare.9933056.v1
title: Yang_Faccenda_Nature2019

description: This dataset is to reproduce the models results in the paper byYang & Faccenda, 2019, Nature. Intraplate and petit-spot volcanism originating from upwelling hydrous mantle transition zone.
DOI: 10.6084/m9.figshare.21379197.v1
title: Additional file 2. Protein-to-mRNA ratios among tissues

description: <strong>Protein-to-mRNA ratios among tissues.</strong> (A) Protein-to-mRNA ratios of the Human Protein Atlas. (B) Protein-to-mRNA ratios of GTEx. (C) GTEx samples. (D) Translational efficiency of brain, liver and testis. (E) High-PTR and low-PTR sets of proteins for each tissue. (F) Concordance of protein sets between tissues in both HPA and GTEx. (G) Protein half-lives of five different human cell lines. (H) mRNA half-lives of three different human cell lines. (I) Proteins secreted to blood.
DOI: 10.6084/m9.figshare.7105817.v1
title: Adapting Data Management Education to Support Clinical Research Projects in an Academic Medical Center

description: This dataset consists of an evaluation form, resulting data, and a slide deck from a case study describing the development, implementation, and evaluation of a 1.5 hour clinical research data management workshop for an academic medical center research community. This workshop was developed by the health sciences library.
DOI: 10.17632/m3v6np4tn8
title: Teachers and Students' Perceptions about Social Media News and Online Teaching & Learning