cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/tpihms
title: MassiveFold data for target H1265

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 2040 predictions were generated for the target = 255 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/w9sj5i
title: RPG complété 2021 Région Limousin

description: RPG complété 2021. Complète le RPG campagne 2021 pour les départements de la région Limousin (19, 23, 87). (contient les parcelles agricoles hors RPG) Données géographiques (vectorielles, shapefile), parcellaires. Sources : IGN, OSO/Cesbio. Traitements : INRAE US ODR, 2023.
DOI: 10.57745/wd0uf2
title: Analyse des inventaires de matières premières agricoles importées depuis les "Pays du Sud"

description: L'objectif de ce travail était d'identifier les produits agricoles les plus importés dont la modélisation dans Agribalyse méritait d'être améliorés car jugés insuffisamment robuste. Des recommandations ont été faites en ce sens.
DOI: 10.57745/xoza48
title: Dataset for raw data of the publication of Estelle Bineau et al (2022) "Inheritance of Secondary Metabolites and Gene Expression Related to Tomato Quality"

description: The dataset contains raw data associated to the publication "Inheritance of Secondary Metabolites and Gene Expression Related to Tomato Quality ", Bineau et al (2022) Int J Molecular Sciences It contains 6 files : DV1: phenotypic data of the 3 biological replicates of the 20 genotypes studied within the factorial design. Genotypes are named based on the species they belong to with 'SP': S. pimpinellifolium; 'SLC': Solanum lycopersicum var. cerasiforme; 'SL': Solanum lycopersicum lycopersicum. HF1 are named after the "female"x"male" they originate from. The biological replicates are indicated at the end of the genotype names as '_1', '_2' and '_3'. DV2: mode of inheritance of the 66 secondary metabolites, SSC and weight assessed within the 14 crosses. For each cross individually, we estimated additive (A) and dominance (D) components of the genetic variation when the one way ANOVA test resulted in a significant genotype effect in overall trait variation among the parents and hybrid. Traits were classified as over-recessive (OR), recessive (R), additive (A), dominant (D) or overdominant (OD) in a given cross depending on the D/A ratio. We classified the trait heredity as 'ns' when no significant genotype effect could be found within a cross as presented in (Pascual et al. 2013). DV3: normalized read counts of the 13,127 genes found expressed in the factorial design for all 3 biological replicates of each of the 20 genotypes studied withi the factorial design. DV4: the 12,896 DEGs identified in at least one of the 190 possible contrasts among the 13,127 genes found expressed in the factorial design. Genes found differentially expressed in a contrast are specified with a '1'. dv5: mode of inheritance of the 12,896 DEGs assessed within the 14 crosses. For each cross individually, we estimated additive (A) and dominance (D) components of the genetic variation when the one way ANOVA test resulted in a significant genotype effect in overall trait variation among the parents and hybrid. Traits were classified as over-recessive (OR), recessive (R), additive (A), dominant (D) or overdominant (OD) in a given cross depending on the D/A ratio. We classified the trait heredity as 'ns' when no significant genotype effect could be found within a cross as presented in (Pascual et al. 2013). DV6: genes comprised within each of the 12 co-expression modules built using the WGCNA package on the 12,896 genes found differentially expressed. We indicate significant correlation and associated p-value of each gene with the 66 metabolites and SSC. We did not include the 13th module gathering genes displaying no co-expression with other patterns identified in the 12 modules.
DOI: 10.57745/ytnaul
title: MassiveFold data for target T1231

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/yzccpk
title: Rats salive microbiota

description: 16S sequencing data of salive microbiota from rats fed different diets
DOI: 10.57745/wvp0fj
title: Early detection of septoria infection on wheat leaves using hyperspectral imaging data

description: The present hyperspectral imaging (HSI) database is composed of healthy leaves and leaves infected with Zymoseptoria tritici fungal pathogen responsible for Septoria tritici blotch (STB). Leaves of two durum wheat genotypes were studied under controlled conditions to track the evolution of STB disease and capture significant spectral and spatial differences until the onset of symptoms. Hyperspectral image acquisitions were purchased with two cameras in visible-near infrared (VNIR) and short-wave infrared (SWIR) spectral ranges on eighteen dates between one day before inoculation and twenty days after inoculation. For each wavelength range studied, a total of 1175 images provided information on 3326 leaves measured throughout the experiment.
DOI: 10.57745/xt7j9e
title: OSO vecteur 2021 - Département des Hautes-Alpes

description: Produit vectoriel de l'occupation du sol OSO 2021 sur le département des Hautes-Alpes
DOI: 10.57745/xwjjgi
title: A ready-to-use database for DADA2: Diat.barcode_rbcL_263bp_DADA2 based on Diat.barcode v12

description: This database is an adaptation for DADA2 of Diat.barcode v12. Length of sequences is 263 bp ------------------------- Rimet, Frederic et al., 2018, "Diat.barcode, an open-access barcode library for diatoms", https://doi.org/10.15454/TOMBYZ
DOI: 10.57745/xypypy
title: Gut homeostasis alterations in Fisher 344 rats according to the iron form (haem vs. ferric citrate) and calcium source (mineral vs. dairy) in the diet: Supplementary Information

description: This dataset contains Supplementary Information related to a nutritional study whose main aims was to compare the impact of dietary calcium provided as calcium salts or dairy matrix on gut homeostasis perturbations by high haeminic or non-haeminic iron intakes. A 3-week intervention study was conducted using Fisher 344 rats. Composition of experimental diets, experimental design, sampling and analysis is given in the “Material and Methods” section of the main paper: “Olier et al. entitled “Calcium-rich dairy matrix protects better than mineral calcium against colonic luminal haem-induced alterations in male rats.” Detailed description of the dataset: The files deposited in this dataset are related to: 1. 16S rRNA gene amplicon sequence analysis described in the manuscript “MetaData_W2.csv” details about origin of the samples, the sequencing technology used and the associated file names. A link for raw sequences files for each sample. “W2_Calcium LDA3.tar” Output files of LDA analyses allowing to display faecal bacterial taxa with differential abundances (LDA&gt;3 with a p-value of 0.05 or 0.01) according to diets. 2. Supplementary Tables of the manuscript Table S1: F-statistics and p values resulting from 2-way ANOVA analysis and Holm-Šídák's multiple comparison tests. Table S2: Mucosal gene expression related to inflammation and detoxification pathways. Table S3: List of genes and primers sequences used in this study. Table S4: Bacterial taxonomy of species found in fecal microbiota of rats. 3. Supplementary Figures of the manuscript The file entitled “Supplementary Figures.pdf” includes: Figure S1: Impact of dietary calcium content (Control vs. Mineral vs. Dairy Calcium) on abundance of faecal bacterial taxa in rats fed ferric citrate or haemoglobin. Figure S2: Impact of dietary iron form (Ferric citrate vs. Haemoglobin) on abundance of faecal bacterial taxa in rats fed variable calcium intake. Figure S3: Haemoglobin-induced changes in faecal microbiota not normalized by the addition of dietary calcium, regardless of its origin. Figure S4: Bacterial communities not affected by dietary haemoglobin but differentially influenced by dietary calcium.
DOI: 10.57745/yn1crz
title: Operator assembly dynamic movement amplitude dataset

description: The provided dataset is based on the joint angle amplitude results of operators' dynamic assembly movement. This file contains data from 12 subjects performing five tasks in 8 different scenarios (either a real workstation or an immersive workstation) during an assembly experiment, with measurements taken for 8 joint angles in 7 different amplitude metrics. The Excel file contains a single sheet, detailed as follows: (1) The two groups of subjects started the experiment either from the real workstation or the immersive workstation, distinguished by different colors. Subjects marked in green indicate those who started the experiment from the immersive workstation, while those without color markings started from the real workstation. (2) The provided file includes information on the subjects' height (cm), subject ID, gender (F/M), profession (Technician/Teacher/Young Engineer), experimental scenario (VR/Real), the number of assembled products completed in each scenario, scenario number, and the amplitude of each joint during the execution of each task. (3) The five assembly tasks in the experiment include: Task 1: Pick the first plate from the toolbox and put it on the assembly support. Task 2: Pick the second plate and align it on the first plate. Task 3: Take the four screws and place them in the plates. Task 4: Take the screwdriver and tighten the four screws. Task 5: Place the assembled product in the toolbox. (4) The 8 joint angles considered in the file include: Right arm flexion, Left arm flexion, Right arm abduction, Left arm abduction, Right lower arm, Left lower arm, Neck, and Hips. (5) The 7 amplitude metrics for joint angles in the file include maximum value, minimum value, max-min, mean, median, standard deviation, and skewness.
DOI: 10.57745/xkcter
title: Individual and group behaviour of 6 isogenic lines of rainbow trout under moderate stress at juvenile stage

description: The datasets are 1) the behaviour of six isogenic lines of rainbow trout in an individual behaviour challenge lasting 25 minutes at an early stage (182-187 days post-hatching). Behaviour variables are averaged by 5 minutes time bins. Data are given at the individual scale. 2) the behaviour of six isogenic lines of rainbow trout in a group behaviour challenge under moderate stress lasting 150 minutes at an early stage (182-187 days post-hatching). Moderate stress consisted in handling stress during fish transfer to the tank, novel environment and moderate heat stress (12°C to 23°C in 120 minutes and 23°C kept during 30 minutes). Behaviour variables are averaged by 30 minutes time bins. Data were averaged at the replica scale (software - ethovision - was not able to extract fish behaviour variables individually in group behaviour challenge) and 3) the detail of body weight of fish used in individual and group behaviour tests. Fish used in behaviour tests were individually weighed but only mean group body weight could be linked to behaviours. All the information about the rearing and the phenotyping of isogenic lines are provided in the open-access preprint : Links between behaviour and resistances to acute hyperthermia and hypoxia using rainbow trout isogenic lines H. Lagarde, D. Lallias, F. Phocas, L. Goardon, M. Bideau, F. Guyvarc’h, L. Labbé, M. Dupont-Nivet, X. Cousin bioRxiv 2023.10.19.563047; doi: https://doi.org/10.1101/2023.10.19.563047
DOI: 10.57745/y4mcry
title: Phylogenetic relationships and genetic diversity of Tunisian maize landraces

description: Genotyping datasets of 15 Algerian and 10 Tunisian landraces, for publication in Hammami et al, in prep in Plos One entitled “Phylogenetic relationships and genetic diversity of Tunisian maize landraces”. 1) Raw fluorescent intensity dataset 50K array used for allelic frequency prediction for 25 maize landraces at 23,656 SNPs 2) Allelic frequencies matrix of B allele for 25 maize landraces at 23,656 SNPs obtained by applying a two-step approach described in Arca et al., 2021, Frontiers in Plant Science (doi:10.3389/fpls.2020.568699) on raw fluorescent intensity dataset with a predictive model calibrated with datasets and scripts from this paper (doi: 10.15454/GANJ7J) 3) Modified Roger’s Distance (MRD) between 166 maize landraces (doi: 10.15454/D4JTKB) and 25 Algerian and Tunisian landraces estimated from genotyping data (Rogers, 1973).
DOI: 10.57745/ytsbgl
title: Données issues de l'étude des comportements de consommation d’électricité (EXPESIGNO)

description: Le projet EXPESIGNO a pour principal objectif l’étude des comportements de consommation d’électricité de foyers lorsqu’ils font face à des signaux d’effacement et/ou de report. Ces foyers ont participé à une étude expérimentale de politique publique mise en œuvre pour gérer les pics de consommation en soirée (entre 18h et 20h l’hiver) et/ou des pics de production d’énergie solaire (entre 12 et 15h l’été). Deux groupes de foyers ont été constitués, l’un servant de groupe de « contrôle » et l’autre représentant le groupe « traité », c’est-à-dire recevant les « alertes » d’effacement ou de consommation. Les consommations électriques ont été suivies via des relevés de consommations issus des compteurs Linky avec l’accord des foyers. Si vous trouvez ce jeu de données utile ou vous avez des questions, n'hésitez pas à écrire dans le topic sur le forum OTE. Le jeu de données contient actuellement les données de : - Les slides de présentation de l’étude aux sujets des deux traitements : groupe contrôle (GC) et groupe traité (GT) - Un article scientifique à paraître présentant l’étude et les principaux résultats - Le design complet de l’étude (en anglais) - La présentation du déroulement d’une session « engagement » (GT) - Les tableaux des engagements possibles, pour les périodes de pic de consommation et les périodes de production importante photovoltaïque - Un fichier csv avec les consommations électriques par 30 mn pour les 174 foyers, du 18/07/2019 au 28/09/2021 - Un fichier csv avec les dates des alertes vertes et oranges - Un fichier csv avec les équipements électriques détenus au début de l’étude par les foyers - Un fichier csv avec les usages initiaux des équipements dans les journées par les foyers - Un fichier csv avec les engagements initiaux pour les 95 foyers (périodes oranges et vertes) - Un ensemble de fichier xlsx reprenant les différents dictionnaires des variables Ce jeu de données couvre la période de septembre 2019 à août 2021.
DOI: 10.57745/ukxjas
title: MassiveFold data for target T1210

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/xkmlmg
title: Étude d’impact du changement climatique sur le régime hydrologique en France métropolitaine – synthèse bibliographique

description: Explore2070 (2010-2012) est la première étude prospective nationale sur l’impact du changement climatique sur la ressource en eau. Outre la fourniture de données hydro-climatiques pour l’horizon 2050-2070, Explore2070 a produit un état des connaissances et des travaux existants sur la question de l'impact du changement climatique sur les eaux de surface en France. Ce rapport est une mise à jour des connaissances acquises depuis la fin d’Explore2070. Les études ont été identifiées pour l’essentiel dans les journaux scientifiques. Nous avons complété le panorama des études sur les eaux de surface par un inventaire de celles dédiées aux eaux souterraines réalisées depuis la fin du projet Explore2070 en privilégiant aussi les articles de revues scientifiques. Cette synthèse sera exploitée ultérieurement pour mettre en perspective les résultats d’Explore2.
DOI: 10.57745/xoeq2z
title: Laboratory experiment on the pollutant dynamics inside a porous city block during urban flooding under steady flow regime

description: This dataset includes measurements of the temporal and spatial concentration distributions within a porous city block, conducted on a physical model scaled at 1:50 and 1:10 in the horizontal and vertical planes, respectively. The experimental setup consists of a 5.4 m long and 3.8 m wide tilting platform, where the flow along the X-axis is driven by a longitudinal bed slope (Sx = 0.12 %) with no transverse slope. The sidewalls of the block and the platform bottom are hydraulically smooth, and all the street cross-sections are rectangular (width b = 15 cm, and height of 15 cm). The studied configuration represents a highly simplified flooded street network with two inflows and four outflows, centered on a city block featuring an interior open space and surrounded by four streets. The experiments were performed under a steady flow regime, with a total inflow discharge, Qi1+Qi2 = 6.5 l/s, partitioned between the inflow in the Right street (Qi1 = 4.5 l/s) and the Left street (Qi2 = 2.0 l/s). The block was studied under three cases of increasing porosity, denoted as C1, C2, and C3. The pollutant release strategy involved two types of durations: a “very long release” duration exceeding 2500 s, applied to cases C1, C2 and C3; “short release” durations of 25 s, 100 s, 250 s, 1220 s and 2110 s, applied only to case C1. The experimental dataset includes: very long release experiments: (i) temporal and spatial distributions of concentration for the three cases C1, C2, and C3 at one-second time steps; (ii) time-evolution of the corresponding spatial-averaged concentration for each case; short releases: (i) temporal and spatial distributions of concentration for the case C1 at one-second time steps for durations of 25 s, 100 s, 250 s and 1220 s; (ii) time-evolution of the corresponding spatial-averaged concentration in case C1 for 25 s, 100 s, 250 s, 1220 s and 2110 s. A complementary experimental dataset providing time-averaged surface velocity fields and flow discharges for each block cases is available in: Mejía-Morales, Miguel Angel; Mignot, Emmanuel; Paquier, André; Proust, Sébastien, 2023, "Data set of a laboratory experiment on the impact of the conveyance porosity of an urban block on the flood risk assessment", https://doi.org/10.57745/UJOCJ8, Recherche Data Gouv, where cases C1, C2 and C3 are denoted as C00-04, C1_block and C00-12, respectively.
DOI: 10.57745/ywbdqq
title: Transcriptions des brouillons du roman "La Réticence" de Jean-Philippe Toussaint

description: Les brouillons tapuscrits et annotés de la Réticence (Jean-Philippe Toussaint, Éditions de minuit, 1991) ont été confié par leur auteur à l’UMR LittArts (UMR 5316 – Arts et pratiques du texte, de l’image, de l’écran et de la scène – Université Grenoble Alpes / CNRS), sous la responsabilité scientifique de Brigitte Ferrato-Combe. Réunissant la totalité des documents préparatoires du roman, depuis les premières notes jusqu’aux épreuves et correspondances avec l’éditeur, ce fonds d’archives se révèle particulièrement intéressant pour les études littéraires, stylistiques ou génétiques. Ces brouillons ont été numérisés par le Service Interuniversitaire de Documentation de l’Université Grenoble Alpes où ils ont été momentanément conservés, et font l’objet d’une transcription sur la plateforme collaborative TACT, opération indispensable pour leur donner une pleine lisibilité et permettre les analyses ou recherches automatiques sur le texte. Le schéma de transcription a été élaboré à partir d’XML-TEI avec des choix de balisage assez simples, qui pourront être enrichis ultérieurement. La transcription reproduit à l’identique le texte tapuscrit, en respectant la mise en page (alinéas, retours à la ligne, saut de ligne). Les erreurs éventuelles (orthographe, syntaxe, ponctuation, fautes de frappe) ne sont pas corrigées. Les annotations manuscrites, très nombreuses, sont déchiffrées (dans la limite de la lisibilité) et transcrites, avec un code couleur et une police de caractère permettant de les distinguer du texte tapé. Leur situation dans la page n’est pas reproduite à l’identique ; la diversité des emplacements a été réduite à deux cas de figure : Les ajouts dont l’emplacement dans le texte est clairement défini sur le brouillon sont transcrits au point d’insertion au-dessus du texte tapé (même lorsque leur longueur a contraint l’auteur à les écrire en marge et à les relier par une flèche) Les annotations marginales dont l’emplacement dans le texte n’est pas précisé sont transcrites en bas de la page. Le balisage a été limité à trois fonctions essentielles : Structuration du texte : identification du numéro figurant sur le feuillet, délimitation des paragraphes. Description précise des ratures, déplacements, soulignements, mises en relief, ajouts manuscrits.. Repérage des entités nommées : noms propres de personne ou de lieu (Biaggi, Sasuelo, etc.) noms communs correspondants à des personnages du texte (l’enfant, le chat, l’hôtelier, le pêcheur, etc. ). Les numérisations des fac-simile sont disponibles sur l’entrepôt Nakala, porté par la TGIR TGIR Huma-Num (lien vers l’entrepôt) La ressource contient aussi les feuilles de transformation XSLT qui permettent de transformer la transcription XML en HTML. Elle sont utilisées pour construire le site qui expose les fac-similés et leur transcription (exemple) ainsi que des expérimentations (exemple).