cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5258/soton/d3859
title: Referrals into the Southampton Chronic Service

description: This dataset contains anonymised information regarding the patient referrals over a 3 month period (from 1st January to 31st March 2024) into the Southampton Chronic Pain Service. The data content includes: age, gender, record of a mental health diagnosis, the class of mental health diagnosis, anxiety and depression scores, whether they had received mental health treatment, referral source, and whether they were accepted into the service.
DOI: 10.25549/satjrnl-ouc112746864
title: Bulat, no. 2 (1906)

description: [description (english with transliteration)] Bulat, no. 2, 1906
DOI: 10.6084/m9.figshare.30764562
title: Reinforcement Learning with Continuous Actions Under Unmeasured Confounding

description: This article addresses the challenge of offline policy learning in continuous action spaces when unmeasured confounders are present. While most existing research focuses on policy evaluation within partially observable Markov decision processes (POMDPs) and assumes discrete action spaces, we advance this field by establishing a novel identification result to enable the nonparametric estimation of policy value for a given target policy under an infinite-horizon framework. Leveraging this identification, we develop a minimax estimator and introduce a policy-gradient-based algorithm to identify the in-class optimal policy that maximizes the estimated policy value. Furthermore, we provide theoretical results regarding the consistency, finite-sample error bound, and regret bound of the resulting optimal policy. Extensive simulations and a real-world application using the German Family Panel data demonstrate the effectiveness of our proposed methodology. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.6084/m9.figshare.30764562.v1
title: Reinforcement Learning with Continuous Actions Under Unmeasured Confounding

description: This paper addresses the challenge of offline policy learning in continuous action spaces when unmeasured confounders are present. While most existing research focuses on policy evaluation within partially observable Markov decision processes (POMDPs) and assumes discrete action spaces, we advance this field by establishing a novel identification result to enable the nonparametric estimation of policy value for a given target policy under an infinite-horizon framework. Leveraging this identification, we develop a minimax estimator and introduce a policy-gradient-based algorithm to identify the in-class optimal policy that maximizes the estimated policy value. Furthermore, we provide theoretical results regarding the consistency, finite-sample error bound, and regret bound of the resulting optimal policy. Extensive simulations and a real-world application using the German Family Panel data demonstrate the effectiveness of our proposed methodology.
DOI: 10.6084/m9.figshare.30764562.v2
title: Reinforcement Learning with Continuous Actions Under Unmeasured Confounding

description: This article addresses the challenge of offline policy learning in continuous action spaces when unmeasured confounders are present. While most existing research focuses on policy evaluation within partially observable Markov decision processes (POMDPs) and assumes discrete action spaces, we advance this field by establishing a novel identification result to enable the nonparametric estimation of policy value for a given target policy under an infinite-horizon framework. Leveraging this identification, we develop a minimax estimator and introduce a policy-gradient-based algorithm to identify the in-class optimal policy that maximizes the estimated policy value. Furthermore, we provide theoretical results regarding the consistency, finite-sample error bound, and regret bound of the resulting optimal policy. Extensive simulations and a real-world application using the German Family Panel data demonstrate the effectiveness of our proposed methodology. Supplementary materials for this article are available online, including a standardized description of the materials available for reproducing the work.
DOI: 10.25549/satjrnl-ouc112745637
title: Bureval, no. 2 (1906-03)

description: [description (english with transliteration)] Bureval [Storm Debris], no. 2, 1906. Weekly. Published by M.Ia. Kasatkina. Edited by V.E. Turok. St. Petersburg. Typography: "Parovaia skoropechatnia of G.P. Pozharov." Literary-satirical journal. This journal was published after the closure of the journal "Buria" [Tempest] in its place. This issue was confiscated by court order -- Rudzinskii, no. 13; BPIR, no. 508.; Artists: De-Pal'do, A. N., Gerardovym, N. N.
DOI: 10.15468/dl.3spnuk
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Anolis huilae"
 ]
}

 The dataset includes 117 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002728-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/satjrnl-m1056
title: Bureval, no. 2 (1906-03)

description: [description (english with transliteration)] Bureval [Storm Debris], no. 2, 1906. Weekly. Published by M.Ia. Kasatkina. Edited by V.E. Turok. St. Petersburg. Typography: "Parovaia skoropechatnia of G.P. Pozharov." Literary-satirical journal. This journal was published after the closure of the journal "Buria" [Tempest] in its place. This issue was confiscated by court order -- Rudzinskii, no. 13; BPIR, no. 508.; Artists: De-Pal'do, A. N., Gerardovym, N. N.
DOI: 10.15468/dl.qztbbf
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON((-122.82216 49.16352,-122.52845 49.16352,-122.52845 49.347,-122.57963 49.39142,-122.82216 49.347,-122.82216 49.16352))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Populus trichocarpa"
 ]
}

 The dataset includes 205 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002730-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cy4d6d
title: Occurrence Download

description: A dataset containing 401 records in GBIF matching the query:

SELECT
 GBIF_ISEA3HCode(
 8, 
 decimalLatitude,
 decimalLongitude,
 COALESCE(coordinateUncertaintyInMeters, 1000)
 ) AS geogrid_id,
 CASE 
 WHEN classKey IN ('359') THEN 'Mammals'
 WHEN classKey IN ('212') THEN 'Birds'
 WHEN familyKey IN ('1103', '1104', '494', '495', '1105', '496', '497', '1106', '498', '499', '1107', '537', '538', '1153', '547', '1162', '548', '549', '550', '1163', '1164', '1165', '1166', '1167', '1305', '1067', '1306', '1307', '1308', '1068', '1069', '587', '1310', '588', '589', '1311', '1312', '1313', '590', '708', '890', '774', '889', '773', '772', '888', '765', '879') THEN 'Bony Fish'
 WHEN classKey IN ('131') THEN 'Amphibians'
 WHEN classKey IN ('216') THEN 'Insects'
 WHEN classKey IN ('11418114', '11569602', '11592253', '11493978') THEN 'Reptiles'
 WHEN phylumKey IN ('52') THEN 'Molluscs'
 WHEN classKey IN ('367') THEN 'Arachnids'
 WHEN classKey IN ('220', '196') THEN 'Flowering Plants'
 WHEN classKey IN ('194', '244', '228', '282') THEN 'Gymnosperms'
 WHEN orderKey IN ('392') THEN 'Ferns'
 WHEN phylumKey IN ('35') THEN 'Mosses'
 WHEN phylumKey IN ('95') THEN 'Sac Fungi'
 WHEN phylumKey IN ('34') THEN 'Basidiomycota'
 END AS taxonomic_group,
 COUNT(DISTINCT speciesKey) AS species_count
FROM occurrence
WHERE countryCode = 'KR'
 AND hasCoordinate = TRUE
 AND hasGeospatialIssues = FALSE
 AND coordinateUncertaintyInMeters &lt;= 2000
 AND occurrenceStatus = 'PRESENT'
 AND speciesKey IS NOT NULL
 AND basisOfRecord != 'FOSSIL_SPECIMEN'
 AND taxonRank = 'SPECIES'
 AND (
 classKey IN ('359', '212', '131', '216', '11418114', '11569602', '11592253', '11493978', '367', '220', '196', '194', '244', '228', '282')
 OR familyKey IN ('1103', '1104', '494', '495', '1105', '496', '497', '1106', '498', '499', '1107', '537', '538', '1153', '547', '1162', '548', '549', '550', '1163', '1164', '1165', '1166', '1167', '1305', '1067', '1306', '1307', '1308', '1068', '1069', '587', '1310', '588', '589', '1311', '1312', '1313', '590', '708', '890', '774', '889', '773', '772', '888', '765', '879')
 OR phylumKey IN ('52', '35', '95', '34')
 OR orderKey IN ('392')
 )
GROUP BY geogrid_id, taxonomic_group;


 The dataset's 401 records were derived from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002720-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/satjrnl-m1057
title: Bureval, no. 2 (1906-03)

description: [description (english with transliteration)] Bureval [Storm Debris], no. 2, 1906. Weekly. Published by M.Ia. Kasatkina. Edited by V.E. Turok. St. Petersburg. Typography: "Parovaia skoropechatnia of G.P. Pozharov." Literary-satirical journal. This journal was published after the closure of the journal "Buria" [Tempest] in its place. This issue was confiscated by court order -- Rudzinskii, no. 13; BPIR, no. 508.; Artists: De-Pal'do, A. N., Gerardovym, N. N.
DOI: 10.15468/dl.nsw842
title: Occurrence Download

description: A dataset containing 1625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Brachyura"
 ]
}

 The dataset includes 1625 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002731-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jceb4m
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Poland",
 "TaxonKey is Tephritis postica"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002732-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mhz89d
title: Occurrence Download

description: A dataset containing 818 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Quadrula verrucosa"
 ]
}

 The dataset includes 818 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002733-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18804611
title: Seizure Data from BEED operated on

description: https://archive.ics.uci.edu/dataset/1134/beed:+bangalore+eeg+epilepsy+dataset

 

Dataset Details Dataset Characteristics: Multivariate Feature Type: Integer Subject Area: Health and Medicine Instances: 8,000 (2,000 per category) Classes: 4 Format: CSV Features: 16 (EEG channels) Associated Tasks: Classification No missing Values Data Structure • Subjects: 80 individuals (20 per file across four folders) • Time Points: 200 per subject • Explanatory Variables (X1–X16): 16 features representing EEG signal characteristics • Response Variable (y) (Column 17): Categorizes the EEG recordings into four distinct classes: o 3 – Recording of seizure events (including activities such as eye blinking or constant staring) o 2 – Recording of focal seizures o 1 – Recording of generalized seizures o 0 – Recording of healthy subjects (control group without epileptic seizures)
DOI: 10.5281/zenodo.18804612
title: Seizure Data from BEED operated on

description: https://archive.ics.uci.edu/dataset/1134/beed:+bangalore+eeg+epilepsy+dataset

 

Dataset Details Dataset Characteristics: Multivariate Feature Type: Integer Subject Area: Health and Medicine Instances: 8,000 (2,000 per category) Classes: 4 Format: CSV Features: 16 (EEG channels) Associated Tasks: Classification No missing Values Data Structure • Subjects: 80 individuals (20 per file across four folders) • Time Points: 200 per subject • Explanatory Variables (X1–X16): 16 features representing EEG signal characteristics • Response Variable (y) (Column 17): Categorizes the EEG recordings into four distinct classes: o 3 – Recording of seizure events (including activities such as eye blinking or constant staring) o 2 – Recording of focal seizures o 1 – Recording of generalized seizures o 0 – Recording of healthy subjects (control group without epileptic seizures)
DOI: 10.5281/zenodo.18793980
title: V- and VL-Scores Unveil Viral Signatures and Origins of Protein Families.

description: V-Score-Search is an online-search website for the public to search V-scores and VL-scores associated with every protein cluster or family in five widely used public databases including PHROG, VOG, KEGG, Pfam, and eggNOG. V-scores and VL-scores are quantitative metrics to serve as a virus-like signature for differentiating between viral and non-viral protein families and genomes (Figure 1). We demonstrate specific use cases of V-scores and VL-scores in virus identification, prophage discovery, annotation of host-derived and metabolic proteins on viral genomes, and virus genome binning. V-scores and VL-scores can serve as a metric to define the likelihood of protein families being detected in viruses and enable diverse applications associated with viral genomics, ecology, and evolution. For more detail on V-scores and VL-scores and how they work, please see our paper (https://www.biorxiv.org/content/10.1101/2024.10.24.619987v1).
DOI: 10.5281/zenodo.18793981
title: V- and VL-Scores Unveil Viral Signatures and Origins of Protein Families.

description: V-Score-Search is an online-search website for the public to search V-scores and VL-scores associated with every protein cluster or family in five widely used public databases including PHROG, VOG, KEGG, Pfam, and eggNOG. V-scores and VL-scores are quantitative metrics to serve as a virus-like signature for differentiating between viral and non-viral protein families and genomes (Figure 1). We demonstrate specific use cases of V-scores and VL-scores in virus identification, prophage discovery, annotation of host-derived and metabolic proteins on viral genomes, and virus genome binning. V-scores and VL-scores can serve as a metric to define the likelihood of protein families being detected in viruses and enable diverse applications associated with viral genomics, ecology, and evolution. For more detail on V-scores and VL-scores and how they work, please see our paper (https://www.biorxiv.org/content/10.1101/2024.10.24.619987v1).
DOI: 10.25549/satjrnl-m1071
title: Bureval, no. 2 (1906-03)

description: [description (english with transliteration)] Bureval [Storm Debris], no. 2, 1906. Weekly. Published by M.Ia. Kasatkina. Edited by V.E. Turok. St. Petersburg. Typography: "Parovaia skoropechatnia of G.P. Pozharov." Literary-satirical journal. This journal was published after the closure of the journal "Buria" [Tempest] in its place. This issue was confiscated by court order -- Rudzinskii, no. 13; BPIR, no. 508.; Artists: De-Pal'do, A. N., Gerardovym, N. N.
DOI: 10.34943/a378beab-ae44-4ee6-a937-e5521f2f8e98
title: Yuquot Hydrophone Deployed 2024-07-17

description: The JASCO M36-V35-100 Hydrophone J000380 was deployed on 2024-07-17 at Yuquot. Yuquot is a small settlement on Nootka Island west of Vancouver Island. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/714f1479-300c-4a0b-a328-5e46f3b9e244
title: Yuquot Hydrophone Deployed 2024-07-17

description: The JASCO M36-V35-100 Hydrophone J000380 was deployed on 2024-07-17 at Yuquot. Yuquot is a small settlement on Nootka Island west of Vancouver Island. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5066/p13xjvhk
title: Density and magnetic susceptibility measurements on Archean and Proterozoic rocks, southern Medicine Bow Mountains, Wyoming, 2021-2024

description: Rock physical property measurements were collected on outcrops to help understand the causative sources of gravity and magnetic survey anomalies in the southern Medicine Bow Mountains of Wyoming. A total of 539 magnetic susceptibility measurements and 318 density measurements have been conducted. The resulting data aid in interpretation of gravity and airborne magnetic data that are helping to understand Precambrian geology and potential mineral resources. For outcrop measurements, lithologic info is provided.
DOI: 10.5281/zenodo.18805863
title: Catabolism of diethyl ether as a sole carbon and energy source by Mycolicibacterium sp. ELW1

description: File: D02 vs. control.csv

RNA-seq: Batch cultures of strain Mycolicibacterium sp. ELW1 were grown in 700 mL glass serum bottles on diethyl ether (DEE) (0.5 mmol (5 mM final con.)) at 30C shaking at 150 rpm. The bottles were inoculated to an initial OD600 of ~0.35 from washed cells previously grown in batch culture on fructose (1 mmol (10 mM final con.)) to late log phase. Separate aliquots of the fructose-grown cells were saved for RNA-seq to serve as a control. After approximately 96 hr of growth on DEE, the cells were harvested by centrifugation (10,000 RCF; 5 min; 4℃) and then pelleted to approximately 3.75 x 108 cells per sample for RNA-seq. The cell pellets for RNA-seq were immediately frozen in a dry ice and ethanol bath for 4 min and then stored at -80℃ until used. Cell pellets were then submitted to the North Carolina State Genomic Sciences Laboratory (Raleigh, NC, USA) for RNA extraction, ribosomal depletion, and Illumina RNA library construction and sequencing. The final quantified libraries were pooled in equimolar amounts for clustering and sequencing on an Illumina NextSeq 2000 DNA sequencer, utilizing a P4 150 PE XLEAP flow cell and sequencing reagent kit (Illumina, USA). The software package Real Time Analysis (RTA), was used to generate raw bcl, or base call files, which were then de-multiplexed by sample into FASTQ files for data submission. Raw data can be found at NCBI's Sequence Read Archive (SRA) (Bioproject: PRJNA1421072, Biosample: SAMN48782278, Accessions: SRR37182428-SRR371822433).

 

Differential expression analysis: We used CLC Genomics Workbench v25.0 (QIAGEN) to perform differential expression analysis. Reads were mapped to the ELW1 chromosome and plasmid (Accessions: CP193805.1 and CP193804.1). Differential expression analysis was performed using the initial fructose-grown inoculating cultures as the control to which all other growth conditions and incubation times were compared (sample sizes: fructose-grown inoculating culture, n = 3; DEE-grown, n = 3). The file displayed is the results of the full differential expression analysis comparing DEE-grown cells to fructose-grown cells of ELW1.
DOI: 10.5281/zenodo.18805864
title: Catabolism of diethyl ether as a sole carbon and energy source by Mycolicibacterium sp. ELW1

description: File: D02 vs. control.csv

RNA-seq: Batch cultures of strain Mycolicibacterium sp. ELW1 were grown in 700 mL glass serum bottles on diethyl ether (DEE) (0.5 mmol (5 mM final con.)) at 30C shaking at 150 rpm. The bottles were inoculated to an initial OD600 of ~0.35 from washed cells previously grown in batch culture on fructose (1 mmol (10 mM final con.)) to late log phase. Separate aliquots of the fructose-grown cells were saved for RNA-seq to serve as a control. After approximately 96 hr of growth on DEE, the cells were harvested by centrifugation (10,000 RCF; 5 min; 4℃) and then pelleted to approximately 3.75 x 108 cells per sample for RNA-seq. The cell pellets for RNA-seq were immediately frozen in a dry ice and ethanol bath for 4 min and then stored at -80℃ until used. Cell pellets were then submitted to the North Carolina State Genomic Sciences Laboratory (Raleigh, NC, USA) for RNA extraction, ribosomal depletion, and Illumina RNA library construction and sequencing. The final quantified libraries were pooled in equimolar amounts for clustering and sequencing on an Illumina NextSeq 2000 DNA sequencer, utilizing a P4 150 PE XLEAP flow cell and sequencing reagent kit (Illumina, USA). The software package Real Time Analysis (RTA), was used to generate raw bcl, or base call files, which were then de-multiplexed by sample into FASTQ files for data submission. Raw data can be found at NCBI's Sequence Read Archive (SRA) (Bioproject: PRJNA1421072, Biosample: SAMN48782278, Accessions: SRR37182428-SRR371822433).

 

Differential expression analysis: We used CLC Genomics Workbench v25.0 (QIAGEN) to perform differential expression analysis. Reads were mapped to the ELW1 chromosome and plasmid (Accessions: CP193805.1 and CP193804.1). Differential expression analysis was performed using the initial fructose-grown inoculating cultures as the control to which all other growth conditions and incubation times were compared (sample sizes: fructose-grown inoculating culture, n = 3; DEE-grown, n = 3). The file displayed is the results of the full differential expression analysis comparing DEE-grown cells to fructose-grown cells of ELW1.
DOI: 10.25549/satjrnl-m1084
title: Bureval, no. 2 (1906-03)

description: [description (english with transliteration)] Bureval [Storm Debris], no. 2, 1906. Weekly. Published by M.Ia. Kasatkina. Edited by V.E. Turok. St. Petersburg. Typography: "Parovaia skoropechatnia of G.P. Pozharov." Literary-satirical journal. This journal was published after the closure of the journal "Buria" [Tempest] in its place. This issue was confiscated by court order -- Rudzinskii, no. 13; BPIR, no. 508.; Artists: De-Pal'do, A. N., Gerardovym, N. N.
DOI: 10.25824/redu/ywgrfm
title: Dados relativos à revisão de escopo sobre teste microbiológico de esterilidade

description: Dados resultantes da pesquisa de Mestrado da Aluna, referente a uma revisão de escopo, objetivando explorar as evidências do teste microbiológico para determinar um prazo de validade para Dispositivos Médicos Reutilizáveis.
DOI: 10.15468/dl.q5rynt
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "Geometry POLYGON((-122.82216 49.16352,-122.52845 49.16352,-122.52845 49.347,-122.57963 49.39142,-122.82216 49.347,-122.82216 49.16352))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Corylus cornuta"
 ]
}

 The dataset includes 52 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002737-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.