cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5258/soton/d2267
title: Dataset supporting the thesis 'Image-Based Modelling of Transport Processes in Real Battery Electrodes and Other Electrochemical Devices: The Development of OpenImpala'

description: This dataset contains the underlying data for the figures presented in the associated thesis "Image-Based Modelling of Transport Processes in Real Battery Electrodes and Other Electrochemical Devices: The Development of OpenImpala". The data is stored as a combination of .xlsx, .raw and .tiff files. The files are grouped into zip folders by chapter. Data in Chapter 1 are related to the publication Le Houx, James, and Denis Kramer. "X-ray tomography for lithium ion battery electrode characterisation—A review." Energy Reports 7 (2021): 9-14, DOI:10.1016/\-j.egyr.2021.02.063. Data in Chapter 3 are related to the publications: Le Houx, James, Markus Osenberg, Matthias Neumann, Joachim R. Binder, Volker Schmidt, Ingo Manke, Thomas Carraro, and Denis Kramer. "Effect of Tomography Resolution on Calculation of Microstructural Properties for Lithium Ion Porous Electrodes." ECS Transactions 97, no. 7 (2020): 255, DOI:10.1149/09707.\-0255ecst and Le Houx, James and Denis Kramer. "OpenImpala: OPEN source IMage based PArallisable Linear Algebra solver." SoftwareX 15 (2021): 100729, DOI:10.1016/j.\-softx.2021.100729. Data in Chapter 4 are related to the publications: Ojha, Manoranjan, James Le Houx, Radha Mukkabla, Denis Kramer, Richard George Andrew Wills, and Melepurath Deepa. "Lithium titanate/pyrenecarboxylic acid decorated carbon nanotubes hybrid-Alginate gel supercapacitor." Electrochimica Acta 309 (2019): 253-263, DOI:10.1016/j.electacta.2019.03.211 and Fraser, Ewan, James Le Houx, Luis Fernando Arenas, Kahanda Koralage Ranga Dinesh and Richard Wills. "The soluble lead flow battery: Image-based modelling of porous carbon electrodes." Journal of Energy Storage 52 (2022): 104791, DOI:10.1016/j.est.2022.104791.
DOI: 10.34943/ac492340-9e2e-4288-bbc8-fc7929037c23
title: Patricia Bay Junction Box Deployed 2011-12-10

description: The S30005 was deployed on 2011-12-10 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.8016875
title: N6-Methyladenosine Directly Regulates CD40L Expression In CD4+ T Lymphocytes

description: <strong>Abstract</strong> T cell activation is a highly regulated process, modulated via the expression of various immune regulatory proteins including cytokines, surface receptors and co-stimulatory proteins. N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is an RNA modification that can directly regulate RNA expression levels and it is associated with various biological processes. However, the function of m<sup>6</sup>A in T cell activation remains incompletely understood. We identify m<sup>6</sup>A as a novel regulator of the expression of CD40 ligand (CD40L) in human CD4<sup>+</sup> lymphocytes. Manipulation of the m<sup>6</sup>A ‘eraser’ fat mass and obesity-associated protein (FTO) and m<sup>6</sup>A ‘writer’ protein methyltransferase-like 3 (METTL3) directly affects the expression of CD40L. The m<sup>6</sup>A ‘reader’ protein YT521-B homology domain family-2 (YTHDF2) is able to recognize and bind m<sup>6</sup>A specific sequences on the <em>CD40L</em> mRNA and promotes its degradation. This study demonstrates that CD40L expression in human primary CD4<sup>+</sup> T lymphocytes is regulated via m<sup>6</sup>A modifications, elucidating a new regulatory mechanism in CD4<sup>+</sup> T cell activation that could possibly be leveraged in the future to modulate T cell responses in patients with immune-related diseases. <strong>Data deposited</strong> meRIP sequencing: read counts of healthy control peripheral blood-derived CD4+ T lymphocytes (figure 1 in article). meRIP sequencing: per gene TMM normalized log2(CPM + 0.168) expression values of healthy control peripheral blood-derived CD4+ T lymphocytes (figure 1 in article). Also includes Log2FoldChange values or each gene.
DOI: 10.5281/zenodo.8016876
title: N6-Methyladenosine Directly Regulates CD40L Expression In CD4+ T Lymphocytes

description: <strong>Abstract</strong> T cell activation is a highly regulated process, modulated via the expression of various immune regulatory proteins including cytokines, surface receptors and co-stimulatory proteins. N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is an RNA modification that can directly regulate RNA expression levels and it is associated with various biological processes. However, the function of m<sup>6</sup>A in T cell activation remains incompletely understood. We identify m<sup>6</sup>A as a novel regulator of the expression of CD40 ligand (CD40L) in human CD4<sup>+</sup> lymphocytes. Manipulation of the m<sup>6</sup>A ‘eraser’ fat mass and obesity-associated protein (FTO) and m<sup>6</sup>A ‘writer’ protein methyltransferase-like 3 (METTL3) directly affects the expression of CD40L. The m<sup>6</sup>A ‘reader’ protein YT521-B homology domain family-2 (YTHDF2) is able to recognize and bind m<sup>6</sup>A specific sequences on the <em>CD40L</em> mRNA and promotes its degradation. This study demonstrates that CD40L expression in human primary CD4<sup>+</sup> T lymphocytes is regulated via m<sup>6</sup>A modifications, elucidating a new regulatory mechanism in CD4<sup>+</sup> T cell activation that could possibly be leveraged in the future to modulate T cell responses in patients with immune-related diseases. <strong>Data deposited</strong> meRIP sequencing: read counts of healthy control peripheral blood-derived CD4+ T lymphocytes (figure 1 in article). meRIP sequencing: per gene TMM normalized log2(CPM + 0.168) expression values of healthy control peripheral blood-derived CD4+ T lymphocytes (figure 1 in article). Also includes Log2FoldChange values or each gene.
DOI: 10.34943/4fa2a4d6-640b-4edd-81aa-1137f1b89a16
title: ODP 1027C Hydrophone Deployed 2020-09-11

description: The Ocean Sonics icListen HF Hydrophone 6092 was deployed on 2020-09-11 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/5c3fc982-0a84-4123-a1f1-c7594c91978b
title: Strait of Georgia East Junction Box Deployed 2012-02-25

description: The S30006 was deployed on 2012-02-25 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/33fd8948-4bca-44d6-8afd-a7a2c1c75918
title: ODP 1027C Hydrophone Deployed 2020-09-11

description: The Ocean Sonics icListen HF Hydrophone 6095 was deployed on 2020-09-11 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/4ed5f6f8-353f-4138-86bf-85911a6444a8
title: ODP 1027C Hydrophone Deployed 2020-09-11

description: The Ocean Sonics icListen HF Hydrophone 6093 was deployed on 2020-09-11 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/43fa6923-e416-40e4-9367-9d7e0d201eb3
title: ODP 1027C Hydrophone Deployed 2020-09-11

description: The Ocean Sonics icListen HF Hydrophone 6094 was deployed on 2020-09-11 at ODP 1027C. ODP 1027C is a borehole site used to pinpoint an area within Cascadia Basin. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/f01dc088-61a3-4820-98d0-14c095b76836
title: Strait of Georgia Central Junction Box Deployed 2012-02-25

description: The S30011 was deployed on 2012-02-25 at Strait of Georgia Central. Strait of Georgia Central is a central area in the Strait of Georgia. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/dbacd01e-1c12-4f75-a8e3-ad6340a98f0d
title: Patricia Bay Junction Box Deployed 2013-04-30

description: The S30011 was deployed on 2013-04-30 at Patricia Bay. Patricia Bay is located in the Saanich Inlet, on the southern tip of Vancouver Island. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.48366/r597101
title: Invasion biology studies added during the enKORE workshop 2023

description: Thirteen studies added during the enKORE workshop in June 2023. Participants were testing the beta version of a template for Studies in Ecology and Evolution, developed by Maud Bernard-Verdier and Lars Vogt.
DOI: 10.34943/f3656572-96fd-4efd-b5b3-b4fa9cdd3b2f
title: Yarrow Point Oxygen Sensor Deployed 2012-12-04

description: The Alec Electronics Rinko-III 0085 was deployed on 2012-12-04 at Yarrow Point. Yarrow Point is located in the Saanich Inlet, north of Coles Bay. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a profiling platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/1ed92522-5f94-4baa-98aa-76f3079af2ec
title: Hercules Conductivity Temperature Depth Deployed 2020-09-04

description: The Sea-Bird SeaCAT SBE19plus V2 8051 was deployed on 2020-09-04 on Hercules. This Remotely Operated Vehicle is operated by Ocean Exploration Trust. This device is a Conductivity Temperature Depth. Conductivity Temperature Depth (CTD) is an instrument package that contains sensors for measuring the conductivity, temperature, and pressure of seawater. Salinity, sound velocity, depth and density are variables that can be derived from sensor measurements. CTDs can carry additional instruments and sensors such as oxygen sensors, turbidity sensors and fluorometers. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5281/zenodo.8017060
title: Russian Interview Transcripts_Vepsi

description: Transcripts of interviews conducted between October 2019 and September 2020 by Gulagechoes team members. Transcripts in Russian and some in English.
DOI: 10.5281/zenodo.8017059
title: Russian Interview Transcripts_Vepsi

description: Transcripts of interviews conducted between October 2019 and September 2020 by Gulagechoes team members. Transcripts in Russian and some in English.
DOI: 10.34943/4c0deffa-5df1-4ed9-a331-fd6380806570
title: Barkley Upper Slope Hydrophone Deployed 2010-09-13

description: The Naxys Hydrophone 02345 (S/N 020) was deployed on 2010-09-13 at Barkley Upper Slope. Upper Slope is a location within Barkley Canyon, which is located on the upper continental slope. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a profiling platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/070821a8-3fde-4ca9-9d12-8cc1fd61cf8a
title: Barkley Canyon Axis Hydrophone Deployed 2011-07-15

description: The Naxys Hydrophone 02345 (S/N 020) was deployed on 2011-07-15 at Barkley Canyon Axis. Barkley Canyon Axis is located within Barkley Canyon, where benthic processes, biodiversity, sediment dynamics are observed. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/42b91a13-0eb2-44e1-935e-39c602d77921
title: CCGS John P. Tully Sub-bottom Profiler Deployed 2013-05-08

description: The Knudsen CHIRP 3260 (S/N K2K-12-0107) was deployed on 2013-05-08 on CCGS John P. Tully. The Canadian Coast Guard Ship (CCGS) John P. Tully is owned and operated by the Canadian Coast Guard. This device is a Sub-bottom Profiler. A sub-bottom profiler is an echosounder that penetrates beneath the seafloor. The backscatter data serves to obtain bathymetric data, and identify and characterize layers of seafloor and subseafloor sediment or rock. The frequency influences the range and spatial resolution. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/91886c55-be97-40f7-90de-9cd088b6c204
title: CCGS John P. Tully Sub-bottom Profiler Deployed 2014-05-01

description: The Knudsen CHIRP 3260 (S/N K2K-12-0107) was deployed on 2014-05-01 on CCGS John P. Tully. The Canadian Coast Guard Ship (CCGS) John P. Tully is owned and operated by the Canadian Coast Guard. This device is a Sub-bottom Profiler. A sub-bottom profiler is an echosounder that penetrates beneath the seafloor. The backscatter data serves to obtain bathymetric data, and identify and characterize layers of seafloor and subseafloor sediment or rock. The frequency influences the range and spatial resolution. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/923eb227-ba2a-4c67-b134-6d7ed23e0a89
title: Strait of Georgia Central Hydrophone Deployed 2008-09-24

description: The IOS3 Hydrophone Array 03 was deployed on 2008-09-24 at Strait of Georgia Central. Strait of Georgia Central is a central area in the Strait of Georgia. This device is a Hydrophone. Hydrophones are devices containing transducers that convert underwater sound waves into electrical signals. They are acoustic instruments that can process data while they are being collected to produce calibrated waveform data. Hydrophones are typically used to study vocalizations of marine mammals, ship traffic and ambient noise. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/d5a68073-c1fc-43e3-877a-00f8e6b205ee
title: Hercules Oxygen Sensor Deployed 2018-07-05

description: The SeaBird 43 Oxygen (S/N 1238) was deployed on 2018-07-05 on Hercules. This Remotely Operated Vehicle is operated by Ocean Exploration Trust. This device is a Oxygen Sensor. Oxygen sensors measure dissolved oxygen concentration in seawater. It was deployed on a mobile platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/ecf8c6bb-b5d1-4756-9d1d-a58ae46c7772
title: Yarrow Point Video Camera Deployed 2013-08-24

description: The Axis 214 PTZ Webcam 00408C84C56B was deployed on 2013-08-24 at Yarrow Point. Yarrow Point is located in the Saanich Inlet, north of Coles Bay. This device is a Video Camera. Video cameras record video of characteristics of the surrounding environments and can be deployed on fixed and mobile platforms. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/250eba45-cbcc-4e64-9b71-7c88c8a6d2e2
title: Strait of Georgia East Junction Box Deployed 2013-03-03

description: The S30009 was deployed on 2013-03-03 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/15d0e260-d662-40f0-8302-ae499bf77341
title: Strait of Georgia East Junction Box Deployed 2011-12-12

description: The S30008 was deployed on 2011-12-12 at Strait of Georgia East. Strait of Georgia East refers to an eastern area of the Strait of Georgia. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.34943/b718a12b-ccac-4074-9ae9-a5a796f1c17e
title: Fraser River Delta Lower Slope Junction Box Deployed 2013-05-04

description: The S30008 was deployed on 2013-05-04 at Fraser River Delta Lower Slope. This site is located on the lower slope of the Fraser River delta, where depth is approximately 150 metres. This device is a Junction Box. Junction Boxes supply power and communications to deployed instruments. Junction boxes have a number of serial and ethernet ports, including 400V ethernet ports that enable connections to other junction boxes and high-voltage instruments. Junction boxes can convert high voltages to lower voltages (15V, 24V or 48V) required by many instruments. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.57967/hf/0744
title: toxic-el