cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1046100.10fu
title: SH1046100.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.66p6tu
title: Occurrence Download

description: A dataset listing the 5430 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON (((168.5 -46.75, 168.55 -46.75, 168.55 -46.8, 168.5 -46.8, 168.5 -46.75)), ((167.55 -47.25, 167.55 -47.3, 167.5 -47.3, 167.5 -47.25, 167.4 -47.25, 167.4 -47.2, 167.6 -47.2, 167.6 -47.05, 167.75 -47.05, 167.75 -46.95, 167.8 -46.95, 167.8 -46.85, 167.75 -46.85, 167.75 -46.7, 168 -46.7, 168 -46.75, 168.05 -46.75, 168.05 -46.8, 168.1 -46.8, 168.1 -46.85, 168.2 -46.85, 168.2 -46.9, 168 -46.9, 168 -46.95, 168.15 -46.95, 168.15 -47, 168.2 -47, 168.2 -46.95, 168.25 -46.95, 168.25 -47.1, 168 -47.1, 168 -47.15, 167.9 -47.15, 167.9 -47.2, 167.85 -47.2, 167.85 -47.15, 167.7 -47.15, 167.7 -47.25, 167.55 -47.25)), ((167.65 -46.75, 167.7 -46.75, 167.7 -46.8, 167.65 -46.8, 167.65 -46.75)))",
 "HasCoordinate is true",
 "Year is less than or equal to 2021",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 5430 records were derived from 132 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152917-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwyjv2
title: Occurrence Download

description: A dataset containing 11402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Muséum d'histoire naturelle de Besançon",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 11402 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199808-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k4yq9g
title: Occurrence Download

description: A dataset containing 9361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hirundo rustica Linnaeus, 1758",
 "Year 2011-2018"
 ]
}

 The dataset includes 9361 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181242-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7q2k9g
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Necturus maculosus maculosus"
 ]
}

 The dataset includes 484 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152943-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.63ca2x
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Odorrana ishikawae (Stejneger, 1901)"
 ]
}

 The dataset includes 87 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152945-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5j2quq
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is USA.12_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Anolis sagrei Duméril & Bibron, 1837"
 ]
}

 The dataset includes 271 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152931-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.597hed
title: Occurrence Download

description: A dataset containing 363932 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Geometry POLYGON((-74.88501 2.31529,-73.03931 2.31529,-73.03931 4.14043,-74.88501 4.14043,-74.88501 2.31529))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 363932 records from 364 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029724-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8prek
title: Occurrence Download

description: A dataset containing 2101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "Locality is Reserva de Producción de Fauna Cuyabeno. IBA",
 "Year 1000-2022"
 ]
}

 The dataset includes 2101 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152962-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dt8nxg
title: Occurrence Download

description: A dataset containing 1991477 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 396d5f30-dea9-11db-8ab4-b8a03c50a862",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1991477 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029733-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ep4vyg
title: Occurrence Download

description: A dataset containing 52729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Ludwigia peploides (Kunth) P.H.Raven, Heracleum sosnowskyi Manden., Heracleum persicum Desf. ex Fisch., C.A.Mey. & Avé-Lall., Cabomba caroliniana A.Gray, Procambarus clarkii (Girard, 1852), Myriophyllum heterophyllum Michx., Lysichiton americanus Hultén & H.St.John, Lagarosiphon major (Ridl.) Moss, Myriophyllum aquaticum (Vell.) Verdc., Impatiens glandulifera Royle, Ludwigia grandiflora (Michx.) Greuter & Burdet, Hydrocotyle ranunculoides L.fil., Heracleum mantegazzianum Sommier & Levier, Faxonius virilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Cherax destructor Clark, 1936, Procambarus acutus (Girard, 1852), Saururus cernuus L., Houttuynia cordata Thunb., Cotula coronopifolia L., Zizania latifolia (Griseb.) Stapf, Petasites japonicus (Siebold & Zucc.) Maxim., Crassula helmsii (Kirk) Cockayne, Pontederia cordata L., Aponogeton distachyos L.f., Egeria densa Planch., Procambarus virginalis Lyko, 2017)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 52729 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181239-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n5gdkx
title: Occurrence Download

description: A dataset containing 655 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chrysoperla externa (Hagen, 1861)"
 ]
}

 The dataset includes 655 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277402-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r99qrk
title: Occurrence Download

description: A dataset containing 29294 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clitellata",
 "HasCoordinate is true",
 "Country is one of (Netherlands)",
 "HasGeospatialIssue is false",
 "Year is greater than 2009"
 ]
}

 The dataset includes 29294 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0199810-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23729/8c19e0fc-98cc-4f68-96c3-57bf0fabe3ed
title: 2024_Harmat_CRPS

description: This data set contains the simulations input files, scripts, and figures data belonging to the publication

Otso I. V. Luotonen, Ekaterina Osmekhina, Eduardo Anaya-Plaza, Sandra Kaabel, Adam L. Harmat, Maria Sammalkorpi, Christopher Jonkergouw, Markus B. Linder, Mauri A. Kostiainen, "Resolving Host-Guest Interactions Between Pillararenes and Homoserine Lactones to Restrain Bacterial Quorum Sensing", Cell Reports Physical Science (2024)

Please cite the above publication when using this data set!

The work was carried out under the Academy of Finland Centers of Excellence Programme (2022–2029) in Life-Inspired Hybrid Materials (LIBER), project numbers 346105, 346110, 346632, 346111, 364199 and 364205. We would also like to acknowledge the Research to Business funding from Business Finland (project number 6764/31/2019: C.J., E.O., M.B.L.). Computational resources by CSC IT Centre for Finland and RAMI – RawMatters Finland Infrastructure are also gratefully acknowledged. We would like to thank Dr. Nelmary Roas for her help with the image analysis of open wounds. A.L.H. thanks Dr. Kaveh Farshadfar, M.Sc. Reza Khakpour and Dr. Dmitry Tolmachev for their aid and helpful discussions regarding the simulations.
DOI: 10.15468/dl.87c5gy
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Siren reticulata Graham, Kline, Steen & Kelehear, 2018"
 ]
}

 The dataset includes 41 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152946-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryj3vc
title: Occurrence Download

description: A dataset containing 1690 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithraea caustica Hook. & Arn."
 ]
}

 The dataset includes 1690 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060267-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36u8vy
title: Occurrence Download

description: A dataset containing 666 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is O Tu Wharekai algae survey"
 ]
}

 The dataset includes 666 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0071116-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.up438x
title: Occurrence Download

description: A dataset containing 1896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.12_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "VerbatimScientificName is Anolis sagrei"
 ]
}

 The dataset includes 1896 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152947-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3bmgjv
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "HasCoordinate is true",
 "TaxonKey is Spartium junceum L."
 ]
}

 The dataset includes 43 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152934-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9uztuw
title: Occurrence Download

description: A dataset containing 10520 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scelorchilus rubecula (Kittlitz, 1830)"
 ]
}

 The dataset includes 10520 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028910-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bndmgp
title: Occurrence Download

description: A dataset containing 6267 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pituophis melanoleucus (Daudin, 1803)"
 ]
}

 The dataset includes 6267 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152975-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wd265c
title: Occurrence Download

description: A dataset containing 1665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "Year 1901-1920"
 ]
}

 The dataset includes 1665 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0153658-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nwdtvk
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-2.31342 36.68925,-2.00874 36.67171,-2.00874 36.79846,-2.26173 36.89953,-2.31342 36.68925))",
 "HasGeospatialIssue is false",
 "TaxonKey is Limonium cossonianum Kuntze"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004694-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z96ptn
title: Occurrence Download

description: A dataset containing 385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Populus pruinosa Schrenk"
 ]
}

 The dataset includes 385 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004695-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqj465
title: Occurrence Download

description: A dataset containing 1973 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Populus euphratica Olivier"
 ]
}

 The dataset includes 1973 records from 97 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004696-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bv7csm
title: Occurrence Download

description: A dataset containing 76279 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Medicago minima (L.) Bartal."
 ]
}

 The dataset includes 76279 records from 862 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0268850-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em9366
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Indocalamus guangdongensis H.R.Zhao & Y.L.Yang)"
 ]
}

 The dataset includes 19 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004697-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n97zsp
title: Occurrence Download

description: A dataset containing 94211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cygnus columbianus bewickii Yarrell, 1830"
 ]
}

 The dataset includes 94211 records from 163 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004692-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5518/1369
title: Dataset for Automated Purification of DNA Origami with SPRI Beads 

description: The data set contains relevant information for the associated manuscript "Automated Purification of DNA Origami with SPRI Beads". It contains the Supporting Information 2, the origami design file and AFM images used in the publication.
DOI: 10.5281/zenodo.14186835
title: The isotopic composition of the French Illimani ice core in the Bolivian Andes supports the east-west South American precipitation dipole from the last deglaciation to the mid-Holocene

description: Isotopic composition (deuterium and deuterium excess) of the French Illimani ice core drilled in 1999 with a revised dating detailed in the following manuscript:

Françoise Vimeux and Amaëlle Landais, 2025. The isotopic composition of the French Illimani ice core in the Bolivian Andes supports the east-west South American precipitation dipole from the last deglaciation to the mid-Holocene. Quaternary Science Reviews 347, https://doi.org/10.1016/j.quascirev.2024.109098.
DOI: 10.5281/zenodo.14186836
title: The isotopic composition of the French Illimani ice core in the Bolivian Andes supports the east-west South American precipitation dipole from the last deglaciation to the mid-Holocene

description: Isotopic composition (deuterium and deuterium excess) of the French Illimani ice core drilled in 1999 with a revised dating detailed in the following manuscript:

Françoise Vimeux and Amaëlle Landais, 2025. The isotopic composition of the French Illimani ice core in the Bolivian Andes supports the east-west South American precipitation dipole from the last deglaciation to the mid-Holocene. Quaternary Science Reviews 347, https://doi.org/10.1016/j.quascirev.2024.109098.
DOI: 10.15468/dl.cr5638
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxonomic and nomenclatural novelties in some Cactaceae of Greater Antilles"
 ]
}

 The dataset's 5 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004688-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1124591
title: Images and Reports from a Historic Building Recording at The Forge, 18 Chipping Hill, Witham, Essex, May 2017

description: This collection comprises of reports and site photographs from a historic building recording undertaken by Colchester Archaeological Trust at The Forge, 18 Chipping Hill, Witham, Essex on 12th May 2017.
DOI: 10.15468/dl.t5paat
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Indocalamus herklotsii McClure)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004698-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zzknv
title: Occurrence Download

description: A dataset containing 766 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche complète à un ou plusieurs passages - ASPE - OFB",
 "TaxonKey is Petromyzon marinus Linnaeus, 1758"
 ]
}

 The dataset includes 766 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004699-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10593540
title: FEater dataset: A molecular fragment dataset to benchmark the robustness of 3D flexible object recognition

description: This dataset is associated with the work: Benchmarking the robustness of the correct identification of flexible 3D objects using common machine learning models

# Original FEater-Single and FEater_Dual dataset. 
FEater_Single
├── TestSet_coord.h5
├── TrainingSet_coord.h5
└── ValidationSet_coord.h5
FEater_Dual
├── TestSet_coord.h5
├── TrainingSet_coord.h5
└── ValidationSet_coord.h5

# Non-redundant baseline dataset
FEater_Baseline
├── TestSet_Dual.h5
├── TestSet_Single.h5
├── TrainingSet_Dual.h5
└── TrainingSet_Single.h5

# FEater-Single and FEater_Dual in different sample size
FEater_Mini200
├── Mini200_Dual.h5
└── Mini200_Single.h5
FEater_Mini400
├── Mini400_Dual.h5
└── Mini400_Single.h5
FEater_Mini800
├── Mini800_Dual.h5
└── Mini800_Single.h5

For further details of the usage, please visit the original GitHub repository: https://github.com/miemiemmmm/FEater
DOI: 10.5281/zenodo.10593541
title: FEater: A large-scale 3D molecular conformation dataset to measure the geometric invariance of models

description: This repository contains the dataset present in the work "FEater: A large-scale 3D molecular conformation dataset to measure the geometric invariance of models". 

FEater_XXX_PDBSRC contains the source PDB fragments each contains over 8 million fragments. 

FEater_XXX_PDB contains the three HDF files with of the coordinate as point cloud. It also includes the topology of the fragments. 

FEater_Minisets contains a subset of features used in the training process. For more details about the FEater_Minisets, please check the FEater_paper.pdf for further details.
DOI: 10.5281/zenodo.12783988
title: FEater: A large-scale 3D molecular conformation dataset to measure the geometric invariance of models

description: For further details of the usage, please visit the original GitHub repository: https://github.com/miemiemmmm/FEater