cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1097254.10fu
title: SH1097254.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1097256.10fu
title: SH1097256.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1097259.10fu
title: SH1097259.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1097260.10fu
title: SH1097260.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1097264.10fu
title: SH1097264.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.zttvr5
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Parasenecio kamtschaticus (Maxim.) Kadota",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2010",
 "HasCoordinate is true"
 ]
}

 The dataset includes 85 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005897-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzthg7
title: Occurrence Download

description: A dataset containing 1249 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Dendropsophus molitor (Schmidt, 1857))",
 "StateProvince is one of (cundinamarca)"
 ]
 }
 ]
}

 The dataset includes 1249 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005896-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.30086
title: How Does Foreign Direct Investment Affect Green Water-Use Efficiency? Evidence from China’s Prefecture-Level Cities
title: How Does Foreign Direct Investment Affect Green Water-Use Efficiency? Evidence from China’s Prefecture-Level Cities

description: Based on panel data from 236 prefecture-level cities between 2003 and 2020, a Super-SBM model with undesirable outputs is employed to measure GWUE. A two-way fixed effects model is used to assess the influence of FDI, along with mechanism and heterogeneity analyses. 
description: Based on panel data from 236 prefecture-level cities between 2003 and 2020, a Super-SBM model with undesirable outputs is employed to measure GWUE. A two-way fixed effects model is used to assess the influence of FDI, along with mechanism and heterogeneity analyses.
DOI: 10.15468/dl.b24mrq
title: Occurrence Download

description: A dataset containing 57113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Specimen)",
 "Continent is South America",
 "Country is one of (Bolivia (Plurinational State of), Argentina, Brazil, Colombia, Uruguay, Paraguay, Venezuela (Bolivarian Republic of), Guyana, Peru, Trinidad and Tobago)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "TaxonKey is Tyrannus savana",
 "Year 2015-2019"
 ]
}

 The dataset includes 57113 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001743-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.30066
title: Aerosol transparency-dependent femtosecond 1 kHz laser filamentation in air
title: Aerosol transparency-dependent femtosecond 1 kHz laser filamentation in air

description: This study explores the influence of aerosol transparency on femtosecond 1 kHz laser filamentation in air. The observations suggest that transparent and opaque aerosols may be associated with distinct filamentation pathways: (1) In transparent cases, scattering appears to play a dominant role, potentially modulated by droplet fragmentation processes related to the effective radius and effective variance, which in turn influence beam propagation characteristics; (2) In opaque cases, attenuation is governed primarily by absorption, accompanied by particle agglomeration effects. These primary trends may be further shaped by secondary processes, such as spectral blue-shift, electron attachment, and plasma-induced low-density channel formation, together contributing to the overall filamentation dynamics under different aerosol conditions. The experimental findings therefore point to a transparency-dependent balance between scattering and absorption that influences filament propagation and supercontinuum generation, offering useful implications for atmospheric laser applications.
description: This study explores the influence of aerosol transparency on femtosecond 1 kHz laser filamentation in air. The observations suggest that transparent and opaque aerosols may be associated with distinct filamentation pathways: (1) In transparent cases, scattering appears to play a dominant role, potentially modulated by droplet fragmentation processes related to the effective radius and effective variance, which in turn influence beam propagation characteristics; (2) In opaque cases, attenuation is governed primarily by absorption, accompanied by particle agglomeration effects. These primary trends may be further shaped by secondary processes, such as spectral blue-shift, electron attachment, and plasma-induced low-density channel formation, together contributing to the overall filamentation dynamics under different aerosol conditions. The experimental findings therefore point to a transparency-dependent balance between scattering and absorption that influences filament propagation and supercontinuum generation, offering useful implications for atmospheric laser applications.
DOI: 10.5281/zenodo.17438459
title: Supplementary Dataset for "Structural and Biophysical Basis for PFAS Binding by Human Sterol Carrier Protein-2"

description: Boltz-2 co-folding predictions of human SCP2 (C-terminal domain residues 425–547 of the SCP2 gene product, UniProt P22307) bound to different PFCAs, including PFDA, PFDoA, PFHxDA, PFOS, PFTeDA, PFTrDA and PFUnDA, as well as Palmitate as a positive control to idenfity the binding pocket in human SCP2 in comparison with the structure of Aedes aegypti SCP2 bound to palmitate (PDB ID: 2KSI).

For the protein-ligand complex predictions, two sets of parameters were employed for all cases. The first default set was performed with 3 recycling steps (--recycling_steps = 3) and 5 diffusion samples (--diffusion_samples = 5). The second exhaustive (r10_d25) approach utilized 10 recycling steps (--recycling_steps = 10) and 25 diffusion samples (--diffusion_samples = 25). All predictions were executed using a Multiple Sequence Alignment (MSA) obtained from the MMseqs2 server with the --use_msa_server flag. 

The generated outputs are organized into the output directories following the Boltz-2 output structure, where [parameters] correspond to either default or r10_d25, [ligand] correspond to Palmitate, PFDA, PFDoA, PFHxDA, PFOS, PFTeDA, PFTrDA and PFUnDA, and [number] corresponds to the number of diffusion samples (5 for default and 25 for r10_d25):

boltz_results_humanSCP2_[ligand]_[parameters]/
├── lightning_logs/# Logs generated during training or evaluation
├── msa/# Contains the MSA generated automatically via the mmseqs2 server
├── predictions/# Contains the model's predictions
    ├── humanSCP2_[ligand]_[parameters]/
        ├── affinity_humanSCP2_[ligand].json        # The affinity scores (affinity_pred_value, affinity_probability_binary, affinity_pred_value1, affinity_probability_binary1, affinity_pred_value2, affinity_probability_binary2)
        ├── confidence_humanSCP2_[ligand]_model_[number].json        # The confidence scores (confidence_score, ptm, iptm, ligand_iptm, protein_iptm, complex_plddt, complex_iplddt, chains_ptm, pair_chains_iptm)
        ├── humanSCP2_[ligand]_model_[number].cif        # The predicted structure in CIF format, with the inclusion of per token pLDDT scores
        ├── pae_humanSCP2_[ligand]_model_[number].npz        # The predicted PAE score for every pair of tokens
        ├── pde_humanSCP2_[ligand]_model_[number].npz        # The predicted PDE score for every pair of tokens
        ├── plddt_humanSCP2_[ligand]_model_[number].npz        # The predicted pLDDT score for every token
        └── plddt_humanSCP2_[ligand]_model_[number].npz        # The predicted pLDDT score for every token
└── processed/# Processed data used during execution
DOI: 10.5281/zenodo.17438460
title: Supplementary Dataset for "Structural and Biophysical Basis for PFAS Binding by Human Sterol Carrier Protein-2"

description: Boltz-2 co-folding predictions of human SCP2 (C-terminal domain residues 425–547 of the SCP2 gene product, UniProt P22307) bound to different PFCAs, including PFDA, PFDoA, PFHxDA, PFOS, PFTeDA, PFTrDA and PFUnDA, as well as Palmitate as a positive control to idenfity the binding pocket in human SCP2 in comparison with the structure of Aedes aegypti SCP2 bound to palmitate (PDB ID: 2KSI).

For the protein-ligand complex predictions, two sets of parameters were employed for all cases. The first default set was performed with 3 recycling steps (--recycling_steps = 3) and 5 diffusion samples (--diffusion_samples = 5). The second exhaustive (r10_d25) approach utilized 10 recycling steps (--recycling_steps = 10) and 25 diffusion samples (--diffusion_samples = 25). All predictions were executed using a Multiple Sequence Alignment (MSA) obtained from the MMseqs2 server with the --use_msa_server flag. 

The generated outputs are organized into the output directories following the Boltz-2 output structure, where [parameters] correspond to either default or r10_d25, [ligand] correspond to Palmitate, PFDA, PFDoA, PFHxDA, PFOS, PFTeDA, PFTrDA and PFUnDA, and [number] corresponds to the number of diffusion samples (5 for default and 25 for r10_d25):

boltz_results_humanSCP2_[ligand]_[parameters]/
├── lightning_logs/# Logs generated during training or evaluation
├── msa/# Contains the MSA generated automatically via the mmseqs2 server
├── predictions/# Contains the model's predictions
    ├── humanSCP2_[ligand]_[parameters]/
        ├── affinity_humanSCP2_[ligand].json        # The affinity scores (affinity_pred_value, affinity_probability_binary, affinity_pred_value1, affinity_probability_binary1, affinity_pred_value2, affinity_probability_binary2)
        ├── confidence_humanSCP2_[ligand]_model_[number].json        # The confidence scores (confidence_score, ptm, iptm, ligand_iptm, protein_iptm, complex_plddt, complex_iplddt, chains_ptm, pair_chains_iptm)
        ├── humanSCP2_[ligand]_model_[number].cif        # The predicted structure in CIF format, with the inclusion of per token pLDDT scores
        ├── pae_humanSCP2_[ligand]_model_[number].npz        # The predicted PAE score for every pair of tokens
        ├── pde_humanSCP2_[ligand]_model_[number].npz        # The predicted PDE score for every pair of tokens
        ├── plddt_humanSCP2_[ligand]_model_[number].npz        # The predicted pLDDT score for every token
        └── plddt_humanSCP2_[ligand]_model_[number].npz        # The predicted pLDDT score for every token
└── processed/# Processed data used during execution
DOI: 10.15468/dl.jh9ers
title: Occurrence Download

description: A dataset containing 5887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Polygonia c-album",
 "Year 1910-1955"
 ]
}

 The dataset includes 5887 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001768-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.30057
title: Rational design of a Fe1−xS/FeS2 homologous heterostructure with exceptional high-rate performance for advanced sodium-ion battery anodes
title: Rational design of a Fe1−xS/FeS2 homologous heterostructure with exceptional high-rate performance for advanced sodium-ion battery anodes

description: This is a dataset about rational design of a Fe1−xS/FeS2 homologous heterostructure with exceptional high-rate performance for advanced sodium-ion battery anodes.The Fe1−xS/FeS2 proposed in this work can improve the electron/Na+ transport rate and mitigate the volume expansion in the electrochemical process. This work provides new insights into designing and preparing transition metal sulfides with heterostructures for sustainable SIBs.This dataset comprises several sections: BET, CV, DFT, GITT, SEM, TEM, XPS, XRD, Electrochemical Properties, Full cell, Nyquist plots, and preparation process.
description: This is a dataset about rational design of a Fe1−xS/FeS2 homologous heterostructure with exceptional high-rate performance for advanced sodium-ion battery anodes.The Fe1−xS/FeS2 proposed in this work can improve the electron/Na+ transport rate and mitigate the volume expansion in the electrochemical process. This work provides new insights into designing and preparing transition metal sulfides with heterostructures for sustainable SIBs.This dataset comprises several sections: BET, CV, DFT, GITT, SEM, TEM, XPS, XRD, Electrochemical Properties, Full cell, Nyquist plots, and preparation process.
DOI: 10.57760/sciencedb.30015
title: Additional files of R codes and Supplementary information of: A multiyear time series (2012–2022) of river plankton dynamics in a subtropical urbanizing watershed
title: Additional files of R codes and Supplementary information of: A multiyear time series (2012–2022) of river plankton dynamics in a subtropical urbanizing watershed

description: Houxi data paper codes and supplementary information
description: Houxi data paper codes and supplementary information
DOI: 10.57760/sciencedb.30174
title: Lactobacillus pentosus attenuates colonic colitis by facilitating phosphatidylcholine biosynthesis through crosstalk with Muribaculum
title: Lactobacillus pentosus attenuates colonic colitis by facilitating phosphatidylcholine biosynthesis through crosstalk with Muribaculum

description:  Lactobacillus pentosus isolated from fermented vegetables remodels the gut microbiota in murine ulcerative colitis and, via a symbiotic relationship with Muribaculum gordoncarteri, activates histidine metabolism to promote phosphatidylcholine biosynthesis through the methylation pathway, thereby restoring intestinal barrier integrity and ameliorating colitis
description:  Lactobacillus pentosus isolated from fermented vegetables remodels the gut microbiota in murine ulcerative colitis and, via a symbiotic relationship with Muribaculum gordoncarteri, activates histidine metabolism to promote phosphatidylcholine biosynthesis through the methylation pathway, thereby restoring intestinal barrier integrity and ameliorating colitis
DOI: 10.15468/dl.bk3efp
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Microtus maximowiczii"
 ]
}

 The dataset includes 231 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001769-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.30172
title: Large Language Models for Prognostic Analysis in Mechanical Fault Diagnosis
title: Large Language Models for Prognostic Analysis in Mechanical Fault Diagnosis

description: This dataset contains bearing fault signals of bearings, including outer ring faults, inner ring faults, and rolling element faults. It is used to build a comprehensive bearing fault diagnosis system that integrates technologies such as signal processing, time-frequency analysis, computer vision, and large language models (LLMs) to provide accurate fault diagnosis, cause analysis, and maintenance recommendations.
description: This dataset contains bearing fault signals of bearings, including outer ring faults, inner ring faults, and rolling element faults. It is used to build a comprehensive bearing fault diagnosis system that integrates technologies such as signal processing, time-frequency analysis, computer vision, and large language models (LLMs) to provide accurate fault diagnosis, cause analysis, and maintenance recommendations.
DOI: 10.57760/sciencedb.30166
title: Thermodynamic and Mechanical Properties of Cement Blended with High-Temperature Activated Red Mud
title: Thermodynamic and Mechanical Properties of Cement Blended with High-Temperature Activated Red Mud

description: Thermodynamic and Mechanical Properties of Cement Blended with High-Temperature Activated Red Mud: Influence of Foaming on Thermal Conductivity and Compressive Strength
description: Thermodynamic and Mechanical Properties of Cement Blended with High-Temperature Activated Red Mud: Influence of Foaming on Thermal Conductivity and Compressive Strength
DOI: 10.57760/sciencedb.30161
title: The sequencing dataset of the transcriptional profile of myofibroblasts after knockdown of SLC7A5
title: The sequencing dataset of the transcriptional profile of myofibroblasts after knockdown of SLC7A5

description: Utilize siRNA to knockdown the SLC7A5 gene in HFL1 cells. By treating SLC7A5-knockdown HFL1 cells with TGF-β1, compared with normal HFL1 cells induced by TGF-β1, the gene differences in the transcriptome were observed. Each group had 3 replicates, and transcriptome sequencing analysis was conducted.
description: Utilize siRNA to knockdown the SLC7A5 gene in HFL1 cells. By treating SLC7A5-knockdown HFL1 cells with TGF-β1, compared with normal HFL1 cells induced by TGF-β1, the gene differences in the transcriptome were observed. Each group had 3 replicates, and transcriptome sequencing analysis was conducted.
DOI: 10.57760/sciencedb.30157
title: Gut Microbiota, Blood Metabolites, and Urticaria in East Asians: A Mendelian Randomization Study with Mediation Analysis：Supplementary charts and graphs
title: Gut Microbiota, Blood Metabolites, and Urticaria in East Asians: A Mendelian Randomization Study with Mediation Analysis：Supplementary charts and graphs

description: Gut Microbiota, Blood Metabolites, and Urticaria in East Asians: A Mendelian Randomization Study with Mediation Analysis：Supplementary charts and graphs
description: Gut Microbiota, Blood Metabolites, and Urticaria in East Asians: A Mendelian Randomization Study with Mediation Analysis：Supplementary charts and graphs