cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.augbjs
title: Occurrence Download

description: A dataset containing 14272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ptychadena oxyrhynchus, Ptychadena porosissima, Ptychadena taenioscelis, Pyxicephalus adspersus, Pyxicephalus edulis, Schismaderma carens, Sclerophrys garmani, Sclerophrys capensis, Sclerophrys gutturalis, Sclerophrys pantherina, Sclerophrys pardalis, Sclerophrys poweri, Sclerophrys pusilla, Semnodactylus wealii, Strongylopus bonaespei, Strongylopus fasciatus, Strongylopus grayii, Strongylopus springbokensis, Strongylopus wageri, Tomopterna cryptotis, Tomopterna branchi, Tomopterna delalandii, Tomopterna krugerensis, Tomopterna marmorata, Tomopterna natalensis, Tomopterna tandyi, Vandijkophrynus amatolicus, Vandijkophrynus angusticeps, Vandijkophrynus gariepensis, Vandijkophrynus robinsoni, Xenopus gilli, Xenopus laevis, Xenopus muelleri, Strongylopus merumontanus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 14272 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019683-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjpu4c
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hirudo verbana"
 ]
}

 The dataset includes 256 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019685-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17038828
title: The Axis Model: A Unified Framework for Emergent Particle Structure, Cosmology, and Gravitational Phenomena

description: This repository contains the computational and empirical validation materials associated with the Axis Model framework. The Axis Model proposes a unified geometric structure in which fundamental particles and interactions emerge from scalar-stabilized configurations of quantized vector displacements (“mortons”).

The archive includes reproducible Colab notebooks spanning multiple domains:





Gravitational wave anomalies (frequency-scan pipelines with preregistered specifications and familywise error control).




Cosmological scaling and anomalies (CMB large-angle suppression, dark-energy scaling, Hubble tension).




Astrophysical structure (galactic rotation curves, lensing deviations, Einstein Cross, dispersion relations).




Particle benchmarks (electron finite-energy radius, muon decay, neutrino mass fits, chirality).




Theoretical extensions:





Quantitative Precision for Predictions: statistical reproducibility and error-control formalism.




Tri-vector Emergence from Scalar Instability: recursive dimensional growth into three-axis geometry.




Electron Morton Benchmark update: explicit size parameters consistent with collider bounds and Planck cutoff.





All notebooks are annotated and reproduce figures, fits, and statistical metrics from the companion manuscripts. Exploratory scripts from early versions are retained for archival comparison, but superseded by preregistered and corrected pipelines.

This dataset supersedes prior releases by extending beyond gravitational-wave analysis into full particle-cosmology unification tests, while standardizing statistical methodology across all domains.

For questions, compatibility issues, or support with the Colab notebooks, contact: amortonmd@gmail.com
DOI: 10.5281/zenodo.17038801
title: Structure and Molecular Dynamics Simulations of an In Silico Model of the α4β2-Nicotinic Acetylcholine Receptor in Complex with PSCA

description: This repository contains a complete set of input files and the resulting trajectory for the Molecular Dynamics (MD) simulation of the α4β2 nicotinic acetylcholine receptor (nAChR) in complex with the prostate stem cell antigen (PSCA), modelled by ensemble docking, as presented in the associated publication “Human Ly6/uPAR protein PSCA correlated with neurological diseases induces pro-inflammatory responses in neurons and astrocytes and targets nAChRs containing β2-subunit”.

The dataset includes all necessary files to run and analyze the simulation performed with GROMACS 2024.4 using the CHARMM36m force field. The simulated system consists of the protein complex embedded in a lipid bilayer.

Contents:





MD_input_files.zip: input files for GROMACS 2024.4, prepared using CHARMM-GUI (CHARMM36m force field):






Full set of parameter files (.mdp) for minimization, equilibration, and production MD




Topology files (.top,  toppar/ directory)




Initial structure files (.gro, .pdb)





Simulation output:






nAChR-PSCA.xtc: 500 ns production trajectory (water removed, 1 frame per ns)




nAChR-PSCA.gro: System after equilibration and before production




nAChR-PSCA.pse: PyMOL session with visualization matching publication Figure 6
DOI: 10.5281/zenodo.17038800
title: Structure and Molecular Dynamics Simulations of an In Silico Model of the α4β2-Nicotinic Acetylcholine Receptor in Complex with PSCA

description: This repository contains a complete set of input files and the resulting trajectory for the Molecular Dynamics (MD) simulation of the α4β2 nicotinic acetylcholine receptor (nAChR) in complex with the prostate stem cell antigen (PSCA), modelled by ensemble docking, as presented in the associated publication “Human Ly6/uPAR protein PSCA correlated with neurological diseases induces pro-inflammatory responses in neurons and astrocytes and targets nAChRs containing β2-subunit”.

The dataset includes all necessary files to run and analyze the simulation performed with GROMACS 2024.4 using the CHARMM36m force field. The simulated system consists of the protein complex embedded in a lipid bilayer.

Contents:





MD_input_files.zip: input files for GROMACS 2024.4, prepared using CHARMM-GUI (CHARMM36m force field):






Full set of parameter files (.mdp) for minimization, equilibration, and production MD




Topology files (.top,  toppar/ directory)




Initial structure files (.gro, .pdb)





Simulation output:






nAChR-PSCA.xtc: 500 ns production trajectory (water removed, 1 frame per ns)




nAChR-PSCA.gro: System after equilibration and before production




nAChR-PSCA.pse: PyMOL session with visualization matching publication Figure 6
DOI: 10.6084/m9.figshare.25346822
title: Exploring the influence of regime shifts on ecosystem services in Iran’s Zayandeh-Rud river basin

description: This research delves into the impact of human-induced regime shifts on ecosystem services in Iran’s Zayandeh-Rud River Basin, during the onset of the Anthropocene epoch marked by rapid changes attributed to human activities. Employing network analysis techniques, including in-degree and out-degree centrality, pivotal actors or drivers contributing to these shifts were identified. A total of 43 experts and researchers in humanities and environmental sciences completed questionnaires to assess the relationship network of regime shift drivers within the river basin, revealing the significant influence of governmental administration, water transfer projects, and water allocation. These factors were found to drive regime shifts, subsequently impacting environmental well-being. The study also thoroughly analyzed the ecosystem services and factors affecting human and environmental welfare affected by these shifts. Insights gained from this research offer crucial information for the development of effective management strategies and policies aimed at mitigating and adapting to regime shifts. By highlighting the key drivers and their impact on ecosystem services, the research provides actionable strategies for addressing regime shifts in the study area. Ultimately, this study contributes to a deeper understanding of the intricate interplay between human activities, regime shifts, and environmental well-being, essential for informed decision-making and sustainable management practices.
DOI: 10.6084/m9.figshare.25346822.v1
title: Exploring the influence of regime shifts on ecosystem services in Iran’s Zayandeh-Rud river basin

description: This research delves into the impact of human-induced regime shifts on ecosystem services in Iran’s Zayandeh-Rud River Basin, during the onset of the Anthropocene epoch marked by rapid changes attributed to human activities. Employing network analysis techniques, including in-degree and out-degree centrality, pivotal actors or drivers contributing to these shifts were identified. A total of 43 experts and researchers in humanities and environmental sciences completed questionnaires to assess the relationship network of regime shift drivers within the river basin, revealing the significant influence of governmental administration, water transfer projects, and water allocation. These factors were found to drive regime shifts, subsequently impacting environmental well-being. The study also thoroughly analyzed the ecosystem services and factors affecting human and environmental welfare affected by these shifts. Insights gained from this research offer crucial information for the development of effective management strategies and policies aimed at mitigating and adapting to regime shifts. By highlighting the key drivers and their impact on ecosystem services, the research provides actionable strategies for addressing regime shifts in the study area. Ultimately, this study contributes to a deeper understanding of the intricate interplay between human activities, regime shifts, and environmental well-being, essential for informed decision-making and sustainable management practices.
DOI: 10.15468/dl.gvjyjd
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus arvensis",
 "Country is Kyrgyzstan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019687-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hwd68z
title: Occurrence Download

description: A dataset containing 20101 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Correa reflexa"
 ]
}

 The dataset includes 20101 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019686-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v99v89
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus arvensis",
 "Country is Mozambique",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019688-250827131500795/datasets/export for details.
DOI: 10.15468/dl.xg39tw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepomis macrochirus, Micropterus dolomieu, Chetia brevis, Oreochromis andersonii, Serranochromis robustus, Tilapia sparrmanii, Amphilius uranoscopus, Clarias ngamensis, Clarias theodorae, Synodontis zambezensis, Protopterus annectens, Coptodon rendalli, Engraulicypris gariepinus, Lacustricola katangae, Lacustricola myaposae, Micropterus floridanus, Amphilius natalensis, Anguilla mossambica, Chetia flaviventris, Anguilla bengalensis, Anguilla marmorata, Brycinus lateralis, Enteromius gurneyi, Labeobarbus kimberleyensis, Opsaridium peringueyi, Salmo trutta, Pseudobarbus trevelyani, Pseudobarbus serra, Coptodon zillii, Labeobarbus seeberi, Barbus hospes, Pangasius sanitwongsei, Poecilia reticulata, Pseudobarbus afer, Pterygoplichthys disjunctivus, Salmo salar, Pseudobarbus calidus, Pseudobarbus erubescens, Serranochromis jallae, Pseudobarbus burchelli, Glossogobius callidus, Enteromius mandelai, Pseudomyxus capensis, Myxus capensis, Ambassis gymnocephalus, Ambassis productus, Sedercypris calidus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019689-250827131500795/datasets/export for details.
DOI: 10.5066/p1gcyivp
title: Gravity and physical property data of the Blythe region, California and Arizona

description: This data release presents point data associated with studies to understand the crustal structure of the Blythe region, where strands of the pre-Quaternary Eastern California Shear zone project across this region in California and Arizona. Data include principal fact information for new gravity measurements collected by the U.S. Geological Survey from 2020 to 2025, previously unpublished gravity measurements in the 1980s and 1990s, and for existing gravity measurements compiled from 5 sources. More than 3,300 gravity measurements were processed to complete Bouguer and isostatic gravity anomalies to provide information on crustal structure, such as the geometry of Cenozoic basins developed along and between faults. Density and magnetic property measurements were also compiled from older sources and combined with new density and magnetic susceptibility measurements of hand samples in the region. Some magnetic susceptibility measurements are of outcrops within the region.
DOI: 10.15468/dl.9a76mz
title: Occurrence Download

description: A dataset containing 1175 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Psiadia punctulata",
 "Geometry POLYGON ((-17.62504 -34.81917, 51.13387 -34.81917, 51.13387 37.34999, -17.62504 37.34999, -17.62504 -34.81917))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1175 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019691-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kuqcjg
title: Occurrence Download

description: A dataset listing the 10864 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is LSUMZ Birds Collection"
 ]
}

 The dataset's 10864 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019682-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fb3zev
title: Occurrence Download

description: A dataset containing 2490 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cephalopterus glabricollis"
 ]
}

 The dataset includes 2490 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019692-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2bkfc4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus arvensis",
 "Country is Samoa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019693-250827131500795/datasets/export for details.
DOI: 10.15468/dl.qdrhgm
title: Occurrence Download

description: A dataset containing 207416 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is LSUMZ Birds Collection"
 ]
}

 The dataset includes 207416 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019681-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ar3ywz
title: Occurrence Download

description: A dataset containing 399 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epacris glacialis"
 ]
}

 The dataset includes 399 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019694-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25318/3310105201-fra
title: Fournisseurs du financement par emprunt que les entreprises ou les organismes prévoient demander, troisième trimestre de 2025

description: Fournisseurs du financement par emprunt que les entreprises ou les organismes prévoient demander, selon le Système de classification des industries de l’Amérique du Nord (SCIAN), l’effectif de l’entreprise, le type d’entreprise, l’activité de l'entreprise et le propriétaire majoritaire, troisième trimestre de 2025.
DOI: 10.15468/dl.cqtqwp
title: Occurrence Download

description: A dataset containing 413 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus arvensis",
 "Country is Slovakia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 413 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019697-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urwjn3
title: Occurrence Download

description: A dataset containing 15133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Ptelea trifoliata"
 ]
}

 The dataset includes 15133 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019695-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ndcysr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lepomis macrochirus, Micropterus dolomieu, Chetia brevis, Oreochromis andersonii, Serranochromis robustus, Tilapia sparrmanii, Amphilius uranoscopus, Clarias ngamensis, Clarias theodorae, Synodontis zambezensis, Protopterus annectens, Coptodon rendalli, Engraulicypris gariepinus, Lacustricola katangae, Lacustricola myaposae, Micropterus floridanus, Amphilius natalensis, Anguilla mossambica, Chetia flaviventris, Anguilla bengalensis, Anguilla marmorata, Brycinus lateralis, Enteromius gurneyi, Labeobarbus kimberleyensis, Opsaridium peringueyi, Salmo trutta, Pseudobarbus trevelyani, Pseudobarbus serra, Coptodon zillii, Labeobarbus seeberi, Barbus hospes, Pangasius sanitwongsei, Poecilia reticulata, Pseudobarbus afer, Pterygoplichthys disjunctivus, Salmo salar, Pseudobarbus calidus, Pseudobarbus erubescens, Serranochromis jallae, Pseudobarbus burchelli, Glossogobius callidus, Enteromius mandelai, Pseudomyxus capensis, Myxus capensis, Ambassis gymnocephalus, Ambassis productus, Sedercypris calidus)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019698-250827131500795/datasets/export for details.
DOI: 10.15468/dl.dfx39n
title: Occurrence Download

description: A dataset containing 1191896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material citation)",
 "Country is Nepal",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1191896 records from 137 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019662-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5979ru
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sonchus arvensis",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019699-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c55718170
title: MassIVE MSV000099003 - Consequences of reactive astrogliosis in vivo
title: To investigate how molecularly induced reactive astrogliosis (MiRA) alters astrocyte interactions with surrounding cells, we utilized extracellularly displayed horseradish peroxidase (HRP) to label astrocyte cell-surface proteins using the membrane-impermeable biotin-xx-tyramide (BxxP). Locally injected AAV2/5 GfaABC1D-HRP-TM was used to selectively isolate the astrocyte surface proteome in the striatum of control and MiRA mice, followed by mass spectrometry to identify the proteins. Our analyses revealed that MiRA increases interactions with microglia while reducing interactions with neurons.