cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21916140
title: Supplemental Files from: Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize

description: Article title: Environment-specific selection alters flowering-time plasticity and results in pervasive pleiotropic responses in maize Authors: Nicole E. Choquette, James B. Holland, Teclemariam Weldekidan, Justine Drouault, Natalia de Leon, Sherry Flint-Garcia, Nick Lauter, Seth C. Murray, Wenwei Xu, Randall J. Wisser <br> <strong>The following Supporting Files are available for this article. A separate README is also available for each data file.</strong> <br> <strong>---- Data files</strong> <strong>psge_combined_full.csv :</strong> Full dataset including design information and all trait measurements from 2014 to 2015. <strong>PSGE_Sel_emergence.csv :</strong> Planting dates and emergence dates for the selection environments. <strong>PSGE_Eval_emergence.csv :</strong> Planting dates and emergence dates for the evaluation environments. <strong>PSGE_transition.csv :</strong> Information for the estimated day of year for flowering time transition for each environment. <strong>PSGE_year_by_location_means.csv :</strong> Year-by-location means for all accessions/populations (flowering time). <strong>Crow_Flies_distances.csv :</strong> Geographical “as the crow flies” distances for all locations. <strong>PSGE_weather_windows.csv :</strong> Summary of weather variables over the three growth periods. <br> <strong>---- R scripts</strong> <strong>Step0_Weather_Summary.Rmd :</strong> Contains the analysis for summarizing the environmental variables over the three periods. Includes adding GDD to psge_combined.csv. <strong>Step1_Build_Model_Eq1.Rmd :</strong> Runs equation 1, estimates the 8x8 selection responses for flowering time traits, main effects for selection and evaluation locations, runs Wald tests, and saves as R objects. <strong>Step2_Sel_Eval_Effects.Rmd :</strong> Evaluates the previous R objects and runs the comparisons of the control populations. <strong>Step3_Responses_ForwardSel_Env.Rmd :</strong> Creates the individual generation by evaluation environment selection responses, runs forward selection, selects the final model, runs env PCA, and selection and evaluation correlations. Uses the summarized environmental files created in Step0_Weather_Summary.Rmd. <strong>Step4_Local_Adaptaiton_Distances.Rmd :</strong> Tests for local adaptation from the 8 x 8 interactions, isolates the interaction effects for the individual generation selection responses runs the forward selection on variable distances. Uses the summarized environmental files created in Step0_Weather_Summary.Rmd. <strong>Step5_Maladaptation_Syndrome.Rmd :</strong> Gets the G0 means for all traits, selection responses, and correlates the trait responses to GDD to silking selection responses. <strong>Step6_Piecewise_Regression.Rmd :</strong> Performs analysis of reaction norms. <br>
DOI: 10.5281/zenodo.7547810
title: age-period-cohort effects on the temporal trend mortality from male suicide in Brazil from 1980 to 2019

description: The available files represent the records of deaths by suicide in men in Brazil and its major regions in the period from 1980 to 2019, in addition to the number of deaths after the correction process for the quality and coverage of deaths, for total suicides and suicides by weapon. of fire. The database for total and firearm suicides, represents the number of corrected deaths presented in age groups and periods grouped into five-year periods, which were used to carry out the analyzes of the effect of age, period and cohort, for total suicides and by weapon. of fire for Brazil and its great regions. .
DOI: 10.5281/zenodo.7547809
title: age-period-cohort effects on the temporal trend mortality from male suicide in Brazil from 1980 to 2019

description: The available files represent the records of deaths by suicide in men in Brazil and its major regions in the period from 1980 to 2019, in addition to the number of deaths after the correction process for the quality and coverage of deaths, for total suicides and suicides by weapon. of fire. The database for total and firearm suicides, represents the number of corrected deaths presented in age groups and periods grouped into five-year periods, which were used to carry out the analyzes of the effect of age, period and cohort, for total suicides and by weapon. of fire for Brazil and its great regions. .
DOI: 10.5523/bris.1v5b0jaa57ivh2657rapfsynrc
title: JM_data

description: Simulation settings files for replication of cases presented in the PhD thesis ‘Modelling Aircraft Fuel Jettison Using Smoothed Particle Hydrodynamics’
DOI: 10.5281/zenodo.6448420
title: Real-time Alignments for Predicting Decision-Making Time for Diagnostics over NGS Cycles

description: Input datasets for an interpretable learning approach to predict decision-making time for diagnostics over NGS cycles. The dataset contains alignment files of two clinical sputum samples sequenced with an Illumina MiSeq sequencing device, and following a real-time sequencing protocol. The datasets consist of real-time alignment files for specific sequencing cycle intervals. The alignment has been performed to a database of respiratory microbes. Data preprocessing, including the removal of human host DNA, is integrated into the real-time alignment approach that has been applied to generate the alignments.
DOI: 10.5281/zenodo.6448421
title: Real-time Alignments for Predicting Decision-Making Time for Diagnostics over NGS Cycles

description: Input datasets for an interpretable learning approach to predict decision-making time for diagnostics over NGS cycles. The dataset contains alignment files of two clinical sputum samples sequenced with an Illumina MiSeq sequencing device, and following a real-time sequencing protocol. The datasets consist of real-time alignment files for specific sequencing cycle intervals. The alignment has been performed to a database of respiratory microbes. Data preprocessing, including the removal of human host DNA, is integrated into the real-time alignment approach that has been applied to generate the alignments.
DOI: 10.5281/zenodo.7547808
title: Real-time Alignments for Predicting Decision-Making Time for Diagnostics over NGS Cycles

description: Input datasets for an interpretable learning approach to predict decision-making time for diagnostics over NGS cycles. The dataset contains alignment files of two clinical sputum samples sequenced with an Illumina MiSeq sequencing device, and following a real-time sequencing protocol. The datasets consist of real-time alignment files for specific sequencing cycle intervals. The alignment has been performed to a database of respiratory microbes. Data preprocessing, including the removal of human host DNA, is integrated into the real-time alignment approach that has been applied to generate the alignments.
DOI: 10.5281/zenodo.7032253
title: Intracranial carotid artery calcification morphology differs in patients with lacunar and non-lacunar acute ischemic strokes

description: <strong>Introduction. </strong>This database includes the raw data linked with the paper "Intracranial carotid artery calcification morphology differs in patients with lacunar and non-lacunar acute ischemic strokes". In this paper, we reported the association of diverse pattern of intracranial carotid artery calcifications (ICAC) and etiologic subtypes of ischemic stroke. <strong>Methods.</strong> We retrospectively analyzed a single center cohort of patients admitted for ischemic stroke with known etiology. Patients with a first ischemic stroke with lacunar, cardioembolic or atherothrombotic large artery disease etiology were included. Each carotid artery was evaluated separately on NCCT scans to define the ICAC pattern. The association of ICAC patterns and stroke etiology was investigated using two logistic regression models adjusting for confounders. <strong>Results.</strong> A total of 300 patients were included in the analysis, mean age 78 years (+-10), 158 (53%) female, median NIHSS 6 (IQR 9). Prevalence of medial, intimal, and mixed calcification was: 73%, 17% and 11% in cardioembolic stroke, 66%, 25% and 9 % in large artery atherosclerosis stroke and 37%, 44% and 19% in lacunar stroke (p&lt;0.001). After adjustment for confounders, intimal pattern (OR=2.14; 95%CI=1.07-4.30), and medial pattern (OR=0.33; 95CI%=0.16-0.67) remained independently associated with lacunar stroke etiology. In conclusion, our study suggests that intimal ICAC pattern is associated with lacunar stroke, and, if validated in further studies, it may serve as a marker for lacunar stroke etiology.
description: Funding: Ricerca Corrente 2017-2019 - Italian Ministry of Health (Italy)
DOI: 10.5281/zenodo.7032252
title: Intracranial carotid artery calcification morphology differs in patients with lacunar and non-lacunar acute ischemic strokes

description: <strong>Introduction. </strong>This database includes the raw data linked with the paper "Intracranial carotid artery calcification morphology differs in patients with lacunar and non-lacunar acute ischemic strokes". In this paper, we reported the association of diverse pattern of intracranial carotid artery calcifications (ICAC) and etiologic subtypes of ischemic stroke. <strong>Methods.</strong> We retrospectively analyzed a single center cohort of patients admitted for ischemic stroke with known etiology. Patients with a first ischemic stroke with lacunar, cardioembolic or atherothrombotic large artery disease etiology were included. Each carotid artery was evaluated separately on NCCT scans to define the ICAC pattern. The association of ICAC patterns and stroke etiology was investigated using two logistic regression models adjusting for confounders. <strong>Results.</strong> A total of 300 patients were included in the analysis, mean age 78 years (+-10), 158 (53%) female, median NIHSS 6 (IQR 9). Prevalence of medial, intimal, and mixed calcification was: 73%, 17% and 11% in cardioembolic stroke, 66%, 25% and 9 % in large artery atherosclerosis stroke and 37%, 44% and 19% in lacunar stroke (p&lt;0.001). After adjustment for confounders, intimal pattern (OR=2.14; 95%CI=1.07-4.30), and medial pattern (OR=0.33; 95CI%=0.16-0.67) remained independently associated with lacunar stroke etiology. In conclusion, our study suggests that intimal ICAC pattern is associated with lacunar stroke, and, if validated in further studies, it may serve as a marker for lacunar stroke etiology.
description: Funding: Ricerca Corrente 2017-2019 - Italian Ministry of Health (Italy)
DOI: 10.21943/auas.21864635
title: Rira Amstel III warmtenet Project Archief

description: Project Data, presentations, notes, papers, images
DOI: 10.21943/auas.21864635.v1
title: Rira Amstel III warmtenet Project Archief

description: Project Data, presentations, notes, papers, images
DOI: 10.5281/zenodo.7457327
title: Supplementary material for "Increased sensitivity of marine invertebrates to metal toxicity in the past two decades linked to Climate Change and Ocean Acidification: revelations from a natural population of sea urchins in the Mediterranean Sea." by "Davide Sartori, Guido Scatena, Cristina Vrinceanu, Andrea Gaion".

description: Satellite observations of environmental factors and effect concentration 50 for copper to sea urchin, from 2003 to 2022.
DOI: 10.5281/zenodo.7457326
title: Supplementary material for "Increased sensitivity of marine invertebrates to metal toxicity in the past two decades linked to Climate Change and Ocean Acidification: revelations from a natural population of sea urchins in the Mediterranean Sea." by "Davide Sartori, Guido Scatena, Cristina Vrinceanu, Andrea Gaion".

description: Satellite observations of environmental factors and effect concentration 50 for copper to sea urchin, from 2003 to 2022.
DOI: 10.5281/zenodo.7547918
title: Data: Learning Lattice Quantum Field Theories with Equivariant Continuous Flows

description: Network parameters of continuous normalizing flows trained for the \(\varphi^4\) theory. Corresponding article: Learning Lattice Quantum Field Theories with Equivariant Continuous Flows [2207.00283] Abstract: We propose a novel machine learning method for sampling from the high-dimensional probability distributions of Lattice Field Theories, which is based on a single neural ODE layer and incorporates the full symmetries of the problem. We test our model on the \(\varphi^4\) theory, showing that it systematically outperforms previously proposed flow-based methods in sampling efficiency, and the improvement is especially pronounced for larger lattices. Furthermore, we demonstrate that our model can learn a continuous family of theories at once, and the results of learning can be transferred to larger lattices. Such generalizations further accentuate the advantages of machine learning methods.
DOI: 10.5281/zenodo.7547917
title: Data: Learning Lattice Quantum Field Theories with Equivariant Continuous Flows

description: Network parameters of continuous normalizing flows trained for the \(\varphi^4\) theory. Corresponding article: Learning Lattice Quantum Field Theories with Equivariant Continuous Flows [2207.00283] Abstract: We propose a novel machine learning method for sampling from the high-dimensional probability distributions of Lattice Field Theories, which is based on a single neural ODE layer and incorporates the full symmetries of the problem. We test our model on the \(\varphi^4\) theory, showing that it systematically outperforms previously proposed flow-based methods in sampling efficiency, and the improvement is especially pronounced for larger lattices. Furthermore, we demonstrate that our model can learn a continuous family of theories at once, and the results of learning can be transferred to larger lattices. Such generalizations further accentuate the advantages of machine learning methods.
DOI: 10.5519/qd.adxldl33
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2736550 records)
DOI: 10.5281/zenodo.7547502
title: Rapid protection induced by a single-shot Lassa vaccine in cynomolgus monkeys (transcriptomic dataset)

description: Lassa fever outbreaks hit West African countries every year and there is still no licensed vaccine to limit the burden of this viral hemorrhagic fever. We previously developed MeV-NP, a single-shot vaccine that induces protective immunity in cynomolgus monkeys one month or more than a year before Lassa virus infection and that is able to protect against divergent viral strains. Given the limited dissemination area of Lassa virus during outbreaks and the high risk of nosocomial transmission, a vaccine that induces rapid protection could be useful to protect exposed people during outbreaks in the absence of preventive vaccination. We tested whether the time to protection could be reduced after immunization by challenging MeV pre-immune cynomolgus monkeys 16 or 8 days after a single shot of MeV-NP. None of the immunized monkeys developed disease and they rapidly controlled viral replication. Animals immunized eight days before the challenge were the best controllers, producing a strong CD8 T-cell response against the viral glycoprotein. A group of animals was also vaccinated an hour after the challenge. These animals did not develop any protective immune responses and presented the same lethal disease as the control animals. This study demonstrates that MeV-NP can induce a rapid protective immune response against Lassa fever in presence of MeV pre-existing immunity but can likely not be used as therapeutic vaccine. Here, we include the experimental design to perfom the statistical analyses and the departing count matrix (raw_counts.txt) cell types: PBMC , 51 samples Conditions:<br> 3 groups, 9 specimens (cynomolgus monkeys) 6 time points day 0, d 3, day 6, day 9, day 12 and day 15 after LASV infection Diff analysis was performed using DESeq2 package with the following design. m1 = model.matrix(~ Subject + Group*Subject + Group*Timepoint , data = target)
description: This study was funded by a grant from the Coalition for Epidemic Preparedness and Innovations (CEPI-CfP-001) to S. Baize and by a grant from the Agence Nationale de la Recherche (ANR-21-CE18-0004-01) to M. Mateo.
DOI: 10.5281/zenodo.7547501
title: Rapid protection induced by a single-shot Lassa vaccine in cynomolgus monkeys (transcriptomic dataset)

description: Lassa fever outbreaks hit West African countries every year and there is still no licensed vaccine to limit the burden of this viral hemorrhagic fever. We previously developed MeV-NP, a single-shot vaccine that induces protective immunity in cynomolgus monkeys one month or more than a year before Lassa virus infection and that is able to protect against divergent viral strains. Given the limited dissemination area of Lassa virus during outbreaks and the high risk of nosocomial transmission, a vaccine that induces rapid protection could be useful to protect exposed people during outbreaks in the absence of preventive vaccination. We tested whether the time to protection could be reduced after immunization by challenging MeV pre-immune cynomolgus monkeys 16 or 8 days after a single shot of MeV-NP. None of the immunized monkeys developed disease and they rapidly controlled viral replication. Animals immunized eight days before the challenge were the best controllers, producing a strong CD8 T-cell response against the viral glycoprotein. A group of animals was also vaccinated an hour after the challenge. These animals did not develop any protective immune responses and presented the same lethal disease as the control animals. This study demonstrates that MeV-NP can induce a rapid protective immune response against Lassa fever in presence of MeV pre-existing immunity but can likely not be used as therapeutic vaccine. Here, we include the experimental design to perfom the statistical analyses and the departing count matrix (raw_counts.txt) cell types: PBMC , 51 samples Conditions:<br> 3 groups, 9 specimens (cynomolgus monkeys) 6 time points day 0, d 3, day 6, day 9, day 12 and day 15 after LASV infection Diff analysis was performed using DESeq2 package with the following design. m1 = model.matrix(~ Subject + Group*Subject + Group*Timepoint , data = target)
description: This study was funded by a grant from the Coalition for Epidemic Preparedness and Innovations (CEPI-CfP-001) to S. Baize and by a grant from the Agence Nationale de la Recherche (ANR-21-CE18-0004-01) to M. Mateo.
DOI: 10.57745/1hok36
title: vibrissesRMQS.prj

description: fichier shapefile
DOI: 10.34740/kaggle/dsv/4868690
title: Mahanagar Yatayat Dataset
DOI: 10.15468/9vgnyv
title: Shebaplankton_Falk3

description: To describe the patterns of distribution and biomass of zooplankton in the western Arctic Ocean.
DOI: 10.5281/zenodo.7548075
title: Analyses chimiques de céramiques antiques de l'atelier Saint-Pierre à Sées et de cinq catégories de céramiques appartenant à des productions fréquemment rencontrées en contexte d'habitat dans la plaine de Caen

description: Les analyses présentées dans les cinq tableaux ont été acquises dans le cadre des travaux du PCR Arbano (Projet Collectif de recherche Antiquité en Basse-Normandie).<br> Ces tableaux sont associés à l'article : M.-A. Thierry, A. Bocquet-Liénard, M.-P. Bataillé, S. Dervin, J. Dupré, H. Gagnant, K. Jardel et X. Savary « La production céramique en Normandie occidentale au Haut-Empire : une terra incognita ? », <em>Annales de Normandie</em>, 2023 (https://www.cairn.info/revue-annales-de-normandie.htm). De nombreuses productions locales et régionales ont été mises en évidence en Basse-Normandie par la récurrence de certaines formes au sein des répertoires et des groupes de pâte observés à l’œil nu ou à la loupe binoculaire. Afin de circonscrire et d’identifier plusieurs aires probables de productions, une démarche d’analyses collaboratives a été mise en œuvre. Elle s’appuie sur le croisement des données typo-chronologiques avec des analyses pétrographiques et chimiques réalisées sur les produits finis et sur différents matériaux argileux susceptibles d’être utilisés pour l’artisanat potier. Les productions des ateliers de Lisieux et de Sées ont également été réexaminées afin de préciser leur spécificité sous les angles typologique et physico-chimique, tout en proposant de nouvelles données sur leur chronologie et aire de diffusion. Le détail de la démarche et ses résultats sont présentés dans l'article publié dans les annales de Normandie en 2023. Les analyses physico-chimiques des productions de l’atelier de Lisieux sont publiées dans les actes du colloque de la SFECAG : M.-A. Thierry, A.Bocquet-Liénard, X. Savary, M.-P. Bataillé, J. Dupré, “L’atelier de potiers Saint-Jacques à Lisieux (Calvados, Normandie) : nouvelles données sur la production et le choix des matières premières argileuses”, <em>Actes du colloque de Bavay</em>, Marseille, Sfecag, 2019, p. 331-354. Pour plus d’informations et un descriptif de chaque jeu de données, voir le fichier readme.md dans l’archive.
description: {"references": ["M.-A. Thierry, A.Bocquet-Li\u00e9nard, M.-P. Bataill\u00e9, S. Dervin, J. Dupr\u00e9, H. Gagnant, K. Jardel et X. Savary \u00ab\u00a0La production c\u00e9ramique en Normandie occidentale au Haut-Empire : une terra incognita ?\u00a0\u00bb, Annales de Normandie, 2023 (https://www.cairn.info/revue-annales-de-normandie.htm)."]}
DOI: 10.5281/zenodo.7548074
title: Analyses chimiques de céramiques antiques de l'atelier Saint-Pierre à Sées et de cinq catégories de céramiques appartenant à des productions fréquemment rencontrées en contexte d'habitat dans la plaine de Caen

description: Les analyses présentées dans les cinq tableaux ont été acquises dans le cadre des travaux du PCR Arbano (Projet Collectif de recherche Antiquité en Basse-Normandie).<br> Ces tableaux sont associés à l'article : M.-A. Thierry, A. Bocquet-Liénard, M.-P. Bataillé, S. Dervin, J. Dupré, H. Gagnant, K. Jardel et X. Savary « La production céramique en Normandie occidentale au Haut-Empire : une terra incognita ? », <em>Annales de Normandie</em>, 2023 (https://www.cairn.info/revue-annales-de-normandie.htm). De nombreuses productions locales et régionales ont été mises en évidence en Basse-Normandie par la récurrence de certaines formes au sein des répertoires et des groupes de pâte observés à l’œil nu ou à la loupe binoculaire. Afin de circonscrire et d’identifier plusieurs aires probables de productions, une démarche d’analyses collaboratives a été mise en œuvre. Elle s’appuie sur le croisement des données typo-chronologiques avec des analyses pétrographiques et chimiques réalisées sur les produits finis et sur différents matériaux argileux susceptibles d’être utilisés pour l’artisanat potier. Les productions des ateliers de Lisieux et de Sées ont également été réexaminées afin de préciser leur spécificité sous les angles typologique et physico-chimique, tout en proposant de nouvelles données sur leur chronologie et aire de diffusion. Le détail de la démarche et ses résultats sont présentés dans l'article publié dans les annales de Normandie en 2023. Les analyses physico-chimiques des productions de l’atelier de Lisieux sont publiées dans les actes du colloque de la SFECAG : M.-A. Thierry, A.Bocquet-Liénard, X. Savary, M.-P. Bataillé, J. Dupré, “L’atelier de potiers Saint-Jacques à Lisieux (Calvados, Normandie) : nouvelles données sur la production et le choix des matières premières argileuses”, <em>Actes du colloque de Bavay</em>, Marseille, Sfecag, 2019, p. 331-354. Pour plus d’informations et un descriptif de chaque jeu de données, voir le fichier readme.md dans l’archive.
description: {"references": ["M.-A. Thierry, A.Bocquet-Li\u00e9nard, M.-P. Bataill\u00e9, S. Dervin, J. Dupr\u00e9, H. Gagnant, K. Jardel et X. Savary \u00ab\u00a0La production c\u00e9ramique en Normandie occidentale au Haut-Empire : une terra incognita ?\u00a0\u00bb, Annales de Normandie, 2023 (https://www.cairn.info/revue-annales-de-normandie.htm)."]}
DOI: 10.6084/m9.figshare.21501054
title: PDE-5-inhibited BMSCs alleviated the high glucose-induced myocardial fibrosis and cardiomyocytes apoptosis by activating the cGMP/PKG pathway

description: No description