cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5440/1239799
title: Addressing numerical challenges in introducing a reactive transport code into a land surface model: A biogeochemical modeling proof-of-concept with CLM-PFLOTRAN 1.0: Modeling Archive

description: This Modeling Archive is in support of an NGEE Arctic discussion paper available at doi:10.5194/gmd-9-927-2016. The purpose is to document the simulations to allow verification, reproducibility, and follow-up studies. This dataset contains shell scripts to create the CLM-PFLOTRAN cases, specific input files for PFLOTRAN and CLM, outputs, and python scripts to make the figures using the outputs in the publication. Through these results, we demonstrate that CLM-PFLOTRAN can approximately reproduce CLM results in selected cases for the Arctic, temperate and tropic sites. In addition, the new framework facilitates mechanistic representations of soil biogeochemistry processes in the land surface model. This dataset includes four zipped files and one .pdf file.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1240734
title: Influences and Interactions of Inundation, Peat, and Snow on Active Layer Thickness: Modeling Archive

description: The Advanced Terrestrial Simulator was used to simulate thermal hydrological conditions across varied environmental conditions for an ensemble of 1D models of Arctic permafrost. The thickness of organic soil is varied from 2 to 40cm, snow depth is varied from approximately 0 to 1.2 meters, water table depth was varied from -51cm below the soil surface to 31 cm above the soil surface. A total of 15,960 ensemble members are included. Data produced includes the third and fourth simulation year: active layer thickness, time of deepest thaw depth, temperature of the unfrozen soil, and unfrozen liquid saturation, for each ensemble member. Input files used to run the ensemble are also included. File formats in the data package: .py, .h5, .xml, .exo, .txt, and .pdf.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.15468/dl.dht2xh
title: Occurrence Download

description: A dataset containing 3611 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphandra natalia (Balslev & A.J.Hend.) Barfod"
 ]
}

 The dataset includes 3611 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035288-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rynn87
title: Occurrence Download

description: A dataset containing 137369 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Argentina",
 "Country is Chile",
 "Country is Uruguay",
 "Country is Brazil",
 "Country is Puerto Rico"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Calidris fuscicollis (Vieillot, 1819)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 137369 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005632-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5440/1299259
title: Soil Water Characteristics of Cores from Low- and High-Centered Polygons, Utqiagvik (Barrow), Alaska, 2012

description: This dataset includes soil water characteristic curves for soil and permafrost in two representative frozen cores collected from a high-center polygon (HCP) and a low-center polygon (LCP) from the Barrow Environmental Observatory. Data include soil water content and soil water potential measured using the simple evaporation method for hydrological and biogeochemical simulations and experimental data analysis. Data can be used to generate a soil moisture characteristic curve, which can be fit to a variety of hydrological functions to infer critical parameters for soil physics. Considering the measured the soil water properties, the van Genuchten model predicted well the HCP, in contrast, the Kosugi model well fitted LCP which had more saturated condition. This dataset includes 8 zipped files, one txt files, and one pdf file.Data were collected to estimate soil water potential and water availability at various temperatures and conditions for hydrological and biogeochemical simulations and experimental data analysis. Data can be used to generate a soil moisture characteristic curve, which can be fit to a variety of hydrological functions to infer critical parameters for soil physics.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1336809
title: Leaf Photosynthetic Parameters Vcmax and Jmax and Supporting Gas Exchange Data, Barrow, Alaska, 2012-2016

description: Photosynthetic parameters Vcmax and Jmax estimated from CO2 response curves and from light saturated photosynthesis using the one point method. Data were collected in Barrow 2012-2016 on 7 species - Arctophila fulva, Arctagrostis latifolia, Carex aquatilis, Dupontia fisheri, Eriophorum angustifolium, Petasites frigidus, Salix pulchra. To allow for future reanalysis of our data, and to maximize further use of it by the modelling community, all our data including our raw gas exchange data is available. This dataset contains 3 csv, 3 xlsx, and 1 pdf files.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1336812
title: Leaf Mass Area, Leaf Carbon and Nitrogen Content, Barrow, Alaska, 2012-2016

description: Carbon, Nitrogen and Leaf Mass Area of leaves sampled from the Barrow Environmental Observatory, Barrow, Alaska. Species measured; Arctophila fulva, Arctagrostis latifolia, Carex aquatilis, Dupontia fisheri, Eriophorum angustifolium, Petasites frigidus, Salix pulchra, Vaccinium vitis-idaea, Salix rotundifolia, Luzula arctica, Saxifraga punctata and Potentilla hyparctica. Samples collected in vegetation plots and outside vegetation plots over an area of approximate 1 km2 centered at 71.275 degrees N, 156.641 degrees W. This dataset contains 3 files in csv, xlsx, and pdf formats.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1343066
title: Zero Power Warming (ZPW) Chamber Prototype Measurements, Utqiagvik (Barrow), Alaska, 2016

description: Data were collected during one season of prototyping associated with the development of a passive warming technology. An experimental chamber, the Zero Power Warming (ZPW) chamber, was fitted with apparatus to modulate venting of a field enclosure and enhance elevation of air temperature by solar radiation. The ZPW chamber was compared with a control chamber (Control) and an ambient open air plot (Ambient). The control chamber was identical to the ZPW chamber but lacked the apparatus necessary to modulate venting, the chamber vents in the control chamber were fixed open for the majority of the trial period. The three plots were located over Carex aquatilis growing in an area of moderately degraded permafrost. Chambers were placed on the same footprints that were used for a similar exercise in 2015 (no data) and therefore those plots had experienced some thaw and degradation prior to 2016. The following data were collected for 80 days at 1 minute intervals from within two chambers and an ambient plot: solar input, chamber venting, air temperature, relative humidity, soil temperature (at 5, 10 and 15 cm), soil moisture, downward and upward NIR. CO2 concentration within the chambers and of the ambient air plot was collected at 1 minute intervals over a 62 hour period in the middle of the growing season. This dataset contains six csv files and one pdf file.The documentation may refer to a ZPW-metadata.xlsx file. This file was split into two csv files: ZPW-metadata.csv and ZPW-metadata-instrumentation.csv.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1346195
title: NGEE Arctic Plant Traits: Soil Temperature and Moisture, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016-2022

description: Data includes soil temperature and soil moisture measured at the Kougarok hill slope located at Kougarok Road, Mile Marker 64. Most measurements are from monitoring stations with permanently installed probes though the data also includes single point measurements from handheld devices. Data collection began in July 2016 and was completed October 2022. The final version of this dataset was archive in 2023. This dataset includes two csv files and one pdf.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1346197
title: NGEE Arctic Plant Traits: Shrub Transects, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016-2017

description: Transect data is from point center quarter (PCQ) surveys for shrub density performed in July 2016 at the Kougarok site and in July 2017 at the Kougarok, Teller, and Council sites. For each sample point along the transects, moving averages for shrub density and shrub basal area are provided along with GPS coordinates. Average shrub height and active layer depth are recorded for each sample point as well. Target shrub species differ across the transects: some surveys targeted a mixture of tall shrub species while others targeted specific species. In 2017 insect damage was also quantified. The dataset contains two *.csv data files and one *.pdf. Missing Values are represented by "NA". The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.15468/dl.qpslym
title: Occurrence Download

description: A dataset containing 22695 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Peru"
 ]
 },
 "Year 2010-2019",
 "TaxonKey is Egretta thula (Molina, 1782)"
 ]
}

 The dataset includes 22695 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005634-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5440/1346200
title: NGEE Arctic Plant Traits: Soil Cores, Kougarok Road Mile Marker 64, Seward Peninsula, Alaska, 2016

description: Soil cores were collected from twelve vegetation biomass plots at the Kougarok hillslope in late July of 2016. The sampled plots were located across six ecotypes present at this site (n=2 replicates per ecotype). Soil cores were separated into depth intervals in the field and frozen for transport to Oak Ridge National Laboratory. Laboratory sample processing of these soils generated data on soil texture, pH, gravimetric water content, bulk density, bulk soil %C and %N. Water extracts were performed on subsamples for determination of extractable total nitrogen, inorganic nitrogen, organic nitrogen, phosphorus, and dissolved organic carbon. This dataset contains 1 csv, and 1 pdf.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1355348
title: Coincident Above- and Below-ground Autonomous Monitoring to Quantify Co-variability in Permafrost, Soil and Vegetation Properties in Arctic Tundra: Supporting Data

description: These data are provided in support of an NGEE Arctic publication (Dafflon et al., 2017) available at doi: 10.1002/2016JG003724 The dataset (221 *.csv data files) contains measurements obtained through 1) electrical resistivity tomography (ERT) to monitor soil properties, 2) pole-mounted optical cameras to monitor vegetation dynamics, and 3) point probes to measure soil temperature, and periodic manual measurements of thaw layer thickness, snow thickness and soil dielectric permittivity at a study site in the Barrow Environmental Observatory (BEO) in 2013 and 2014. The BEO is located within the Arctic coastal region, about 6 km from the ocean shore and the village of Barrow, AK.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5440/1358456
title: Physical, Chemical, and Hydrologic Characteristics of Active Layer and Permafrost Soils of Arctic Polygonal Tundra, Barrow, Alaska, 2013-2016

description: This dataset reports the results of physical, chemical, and hydrologic analyses of soil cores collected at the NGEE Arctic Intensive Sites 0 and 1 (Plots A, B, C, and D) during late winter seasons (April-May) from 2013 to 2016. Locations were selected across the polygonal ground to include low, flat, and high centered polygons (LCPs, FCPs and HCPs) and internal features (i.e. the trough, center, and rim). The data are depth-resolved and down to ~ 4m below ground surface for some cores. The specific depths for each core where samples were analyzed vary from core to core. This dataset includes two .csv files and one .pdf file.The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).