cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/wwk7zzcfhv
title: Consensus Antimicrobial Peptides Identified via Three Prediction Models from Peptide Libraries of Cephalopods' Posterior Salivary Glands

description: The antimicrobial peptide (AMPs) subsets presented herein have been obtained through a consensus prediction approach involving three distinct machine learning models. These models were employed on peptide libraries associated with 13 digestion protocols (doi:10.17632/c3zhzgwsnw.1), which were applied to the reported omics data of Cephalopods' Posterior Salivary Glands (doi: 10.17632/gxmkytwdhx.1). The provided dataset encompasses 13 peptide FASTA files, each annotated with the enzyme(s) involved in the in silico digestion process, categorised as using a single enzyme (OE), or two enzymes (TE) applied either sequentially (S) or concurrently (C). The identified AMPs represent an intriguing and unexplored chemical landscape, with the potential to drive the discovery of novel peptide-based pharmaceutical agents.
DOI: 10.17632/fdt6y83z8w
title: Cytotoxic Steroidal Saponins from Raphia vinifera (Arecaceae).

description: Raphia vinifera fruits provide healthy phytochemicals to the body and is of nutritive value. The data shows spirostan-5-ene and Frustan-5-ene steroidal saponins isolated from the extracts of Raphia vinifera fruits among these, four are reported for the first time herein. The data is NMR (1D & 2D) and High Resolution Mass spectrometry data, obtained by carrying out analysis on samples of the isolated compounds on the instrument. This data is used to determine the structure of the compound.
DOI: 10.17632/jc5mzhv39t
title: Quasi-static out-of-plane one-way test of a U-shaped unreinforced brick masonry wall

description: The dataset collects the results of the quasi-static out-of-plane one-way cyclic test of a U-shaped unreinforced brick masonry wall, carried out by means of an airbag, at the laboratory facility of the University of Minho.
The U-shaped specimen is composed of a front wall (2.9 m wide, 1.40 m high, 0.25 m thick) and two transverse walls (1.6 m wide, 1.40 m high, 0.25 m thick), with solid clay bricks.
More details on the test are provided in:
Alberto Barontini, Jacopo Scacco, Luis C.M. da Silva, Graça Vasconcelos, Paulo B. Lourenço, Gabriele Milani, Experimental quasi-static out-of-plane test of a U-shaped brick masonry wall, Engineering Structures, Volume 287, 2023, 116195, ISSN 0141-0296, https://doi.org/10.1016/j.engstruct.2023.116195.
DOI: 10.17632/nj9pkvjvrg
title: Predator-prey interactions and life history of Orius laevigatus and O. majusculus feeding on flower and leaf-inhabiting thrips

description: Thrips (Thysanoptera: Thripidae) are major pests in horticulture worldwide. Longstanding biological control strategies that have been developed for flower thrips such as Frankliniella occidentalis (Pergande) are being disrupted by the recent introduction of leaf-inhabiting thrips such as Echinothrips americanus Morgan and Thrips setosus Moulton in Northern Europe. In this study, we evaluated the predator–prey interactions, predation capacity, juvenile development and adult reproduction of the two commercial anthocorid predators Orius laevigatus (Fieber) and Orius majusculus (Reuter) (Hemiptera: Anthocoridae) on these thrips. In behavioral assays, predators were more successful in subduing and consuming sedentary leaf-inhabiting thrips adults compared to the highly mobile F. occidentalis. Furthermore, O. laevigatus was more successful in subduing prey compared to the bigger predator O. majusculus. Female adults of O. laevigatus and O. majusculus killed 18 and 20 F. occidentalis adults, respectively, in 24 h, while the kill rate was around two times higher when predators were offered E. americanus or T. setosus as prey. Developmental and reproductive parameters of both Orius predators were more favorable when feeding on the leaf-inhabiting thrips compared to F. occidentalis. This was further evident in the higher intrinsic rates of increase (rm) we recorded on a diet of E. americanus compared to F. occidentalis (0.162 and 0.148 females/female/day for O. laevigatus, respectively; 0.148 and 0.127 for O. majusculus, respectively). Our findings show that E. americanus and T. setosus constitute high quality prey for anthocorid predators, highlighting the potential of these predators for effective pest control.
DOI: 10.17632/tvrc23nffr
title: Supplementary Material - Evidence for a Founder Effect of SDHB Exon 1 Deletion in Brazilian Patients with Paraganglioma

description: Supplementary Materials: 

Supplementary figure 1. Pedigree of Case #4 showing the high penetrance of the SDHB exon 1 deletion by the age of 60 years. Only one case had an abdominal paraganglioma diagnosed by genetic surveillance.

Supplementary table 1. Oligonucleotides used for SDHB, SDHC and SDHD SANGER sequencing, and for SDHB breakpoint analysis.

Supplementary table 2. Classification of SDHB variants according to the American College of Medical Genetics (ACMG) and the Association for Molecular Pathology (AMP).

Supplementary materials. High throughput sequencing data analysis.
DOI: 10.17632/jfb93674c2
title: Trinary Nanohybrid Nanocomposite (Ag/MoS2/ZnO): A Plausible Photoelectrode for Photoelectrochemical Water Splitting

description: Current study aims to synthesis trinary nanohybrid composite (Ag/MoS2/ZnO) and evaluate its potential application as photoanode to produce hydrogen gas with low voltage (0.2 V vs. RHE). Combination of structural analysis via microscopy analysis and elemental spectroscopy has proven the successful in integrating Ag/MoS2 dispersion phase onto ZnO nanorods matrix. Optical characterization on the as-prepared Ag/MoS2/ZnO indicates there is an improvement of light absorption towards visible light region, which is benefiting the photoelectrochemical process by creating additional photoexciton. Photoelectrochemical performance analysis reveals that the performance of trinary nanohybrid composites exhibits better water splitting efficiency as compared to its single component counterpart (ZnO). Among all the samples, 20 wt% Ag/MoS2 depicts the best photoelectrochemical performance with the low onset potential (0.3V vs. RHE) and photoconversion efficiency of 1.15% at peak voltage of 0.85 V (vs. RHE). Without any external supplied voltage, chronoamperometry measurement indicate there is a short circuit current of 0.70 mA/cm2 and similar bias-free condition has found to be able in sustaining self-driven hydrogen gas generation up to 54.49 μL according to gas chromatography-analysis. The enhancement of photoelectrochemical performance has been discussed and accredited to the presence of active edges in MoS2 nanoflakes in addition to Ag nanoparticles that facilitate the efficient charge separation process. Current work is envisaged to serve as a platform for exploring the potential in using multi-compounds integration approach for realizing bias-free water splitting application.
DOI: 10.17632/yfc3c6xc75
title: Data from the description and application fidelity assessment of a workshop aiming to raise awareness of vicarious trauma and introduce response art (WAVT-RA)

description: We designed and implemented a workshop aiming to raise awareness of vicarious trauma and introduce response art (WAVT-RA) to psychotherapists who work with refugees and asylum claimants who have survived trauma. An art therapist received training to facilitate the workshop. The art therapist facilitator animated the workshop attended by seven participants. We sought to examine whether the design procedure of the WAVT-RA permitted a successful application of the workshop as planned and to encourage reproducibility. Consequently, the WAVT-RA was described from observation (video recording) and an assessment of application fidelity (Chen, 2005) was carried out. This dataset features a description of the training sessions that took place with the facilitator, led by the lead researcher, a description of the facilitator guide that was designed for training purposes, a description of the PowerPoint slides that were projected during the workshop, detailed tables presenting results from the application fidelity evaluation (coverage, strength, intensity), a table presenting the detailed description of the WAVT-RA from data observation, and a table featuring the WAVT-RA self-reflection grid which participants to the WAVT-RA were invited to use to explore their process of response art. This dataset is shared in support of our efforts towards transparency. In disseminating details from the groundwork leading to the application of the WAVT-RA and from resulting observations, we hope to provide inspiration for future professional development program design endeavours.
DOI: 10.17632/23f7j32zmf
title: Anderson_LOH_v3

description: Simultaneous brain cell type and lineage determined by scRNA-seq reveals stereotyped cortical development

Mutations are acquired frequently, such that each cell’s genome inscribes its history of cell divisions. Common genomic alterations involve loss of heterozygosity (LOH). LOH accumulates throughout the genome, offering large encoding capacity for inferring cell lineage. Using only single cell RNA sequencing (scRNA-seq) of mouse brain cells, we found that LOH events spanning multiple genes are revealed as tracts of monoallelically expressed, constitutionally heterozygous single nucleotide variants (SNVs). We simultaneously inferred cell lineage, marked developmental time points based on X-chromosome inactivation and the total number of LOH events, while identifying cell types from gene expression patterns. Our results are consistent with progenitor cells giving rise to multiple cortical cell types through stereotyped expansion and distinct waves of neurogenesis. This type of retrospective analysis could be incorporated into scRNA-seq pipelines and, compared to experimental approaches for determining lineage in model organisms, is applicable where genetic engineering is prohibited, such as humans.
DOI: 10.17632/2wvnwn4d7p
title: Genomic data for: "De novo transcriptome assembly and identification of GPCRs in two species of monogenean parasites of fish" (https://doi.org/10.1051/parasite/2022052)

description: Genomic resources for platyhelminths of the class Monogenea are scarce; despite the diversity of these parasites, some species are highly pathogenic to their fish hosts. This work (https://doi.org/10.1051/parasite/2022052) aimed to generate de novo-assembled transcriptomes of two monogenean species, Scutogyrus longicornis (Dactylogyridae) and Rhabdosynochus viridisi (Diplectanidae). These transcriptomes consist of 47,187 and 25,696 putative proteins, further annotated according to Swiss-Prot, Pfam, GO, KEGG, and COG databases. The present study provides the first publicly available transcriptomes for monogeneans of the subclass Monopisthocotylea, which can serve as valuable genomic datasets for functional genomics research of this important group of parasites.
DOI: 10.17632/snw6vb9yxh
title: CONTROL PRENATAL EXPERIENCIA DE MUJERES CON VIOLENCIA DE PAREJA

description: La violencia de pareja contra la mujer ocurre también en el embarazo. Comprender la experiencia de las mujeres en situación de violencia de pareja durante la atención prenatal, identificar el apoyo percibido y las orientaciones recibidas, arroja luces para brindar una atención en salud de calidad y definir acciones en los servicios de salud
DOI: 10.17632/r5d8fjj7pp
title: ecommerce research

description: This is a stata dta file containing the MELI and EBAY stock data
DOI: 10.17632/nxfg536kg3
title: Effect of inclusions on hydrogen diffusion and trapping in X70 pipeline steel

description: The inclusions in the mid-layer from the centre segregation zone of pipeline steels had an important in hydrogen diffusion and accumulation in pipeline steel. This detailed study is made after obtaining ambiguous results from the literature.
DOI: 10.17632/dg93rngt6z
title: Appropriateness of Anchovy Purse Seine Design

description: Data about Appropriateness of Anchovy Purse Seine Design consist of Buoyancy and Sinking Force material type (PA, PE, rubber) of each component.
DOI: 10.17632/jsstt8gm97
title: Silicon isotopes in an Archaean migmatite confirm seawater silicification of TTG sources

description: Data package associated with the manuscript "Silicon isotopes in an Archaean migmatite confirm seawater silicification of TTG sources" submitted to GCA. All data depicted in figures in tables in the main text as well as in the supplementary material are available in this repository. Summaries of the main text and supplementary data are tabulated in Excel files containing multiple sheets. Individual .csv files for each figure and table are also included.

Link to article: https://www.sciencedirect.com/science/article/pii/S0016703724000413#da005
DOI: 10.17632/m2xby4nx8m
title: Data for: Private-Public Capital Substitution in Production

description: For use only in academic research.
DOI: 10.17632/gkd9jg4cw3
title: Dataset for "Modulating amyloids’ formation path with sound energy"

description: Within this data set are the following:
1. TEM images of lysozyme protein monomers and fibrils.
2. Average size/length distribution of lysozyme monomers/fibrils exposed to ultrasound.
3. FTIR spectra of Amide I band of lysozyme protein monomers/fibrils exposed to ultrasound, thermal treatment and mechanical mixing.
4. SDS-page of lysozyme monomers/fibrils treated with ultrasound.
5. SAXS analysis, modelling and mass fractions of lysozyme monomers/fibrils, non-treated and treated by ultrasound.
6. Kinetics of aggregation of lysozyme monomers/fibrils, non-treated, treated by ultrasound, thermal treatment and mechanical mixing.
7. AFM imaging of lysozyme monomers/fibrils, non-treated and treated by ultrasound.
8. AFM-nanoindentation lysozyme monomers/fibrils, non-treated and treated by ultrasound.
9. Mass spectra of lysozyme monomers, non-treated and treated by ultrasound.
10. Amino acid analysis of lysozyme monomers, non-treated and treated by ultrasound.
DOI: 10.17632/8j4x6dj2f7
title: Guo_Kowalczyk_Lee_Data_Software_Package

description: Software and supporting materials for STAR Protocols manuscript "Label and quantify mRNA molecules in live cell experiments using SunRISER and dNEMO".
Authors: Yue Guo, Gabriel Kowalczyk, & Robin E.C. Lee. Additional information on operating dNEMO can be found at https://github.com/recleelab.
DOI: 10.17632/56zk8xd47w
title: Raw data for: Possibility of existing brand-new type of attractive field in YBa2Cu3O6+δ

description: To check the effect of dissolved water on the magnetic properties of YBa2Cu3O6+d, we stored the water-saturated sample (sample 3) in a dry atmosphere for 3 days. The result of the magnetic measurement of sample 3 after such treatment is presented.
DOI: 10.17632/jrygwc7mww
title: Data for: Evidence of microplastics from benthic jellyfish (Cassiopea xamachana) in Florida estuaries
DOI: 10.17632/skfj8jbdvv
title: FACTOR AFFECTING THE SUCCESSFUL OF MUSTAHIK EMPOWERMENT PROGRAM : EVIDENCE FROM PEKANBARU, INDONESIA

description: This research aims to explore what the factor are affect to the successfull of mustahik empowerment program.
DOI: 10.17632/xc3vs6wy9b
title: ISONIAZID PREVENTIVE THERAPY COMPLETION AND FACTORS ASSOCIATED WITH NON-COMPLETION AMONG PATIENTS ON ANTIRETROVIRAL THERAPY AT KISENYI HEALTH CENTRE IV, KAMPALA, UGANDA.

description: This is a dataset of patients on ART intiated on Isoniazid preventive therapy (IPT) in September 2019. It includes variables on patient characteristics including age, sex, HIV viral suppression status, HIV clinical stage, IPT status, among others. We aimed to determine the completion level of IPT among those initiated and the patient related factors of IPT non-completion.
DOI: 10.17632/86xz2svwss
title: L2-Gradient Flow --- Frank-Oseen --- Different Gauges of Surface Independence

description: Solutions for the L2 -gradient flow equations for the Frank-Oseen Model with K = 0.1 and ω = 0.5.
DOI: 10.17632/ch4tdcn5c8
title: The accuracy of a new device using mixed reality surgical navigation (MRSN) with UCRT frame

description: 1. Time of 3D Model Reconstruction &lt;20s
Computational data from CT scanned bones (Dicom sequence files) were imported into the Mimmics software to be created into a visualized 3D digital model file in .stl format in less than 20 seconds.

2. Loading Time of a 3D Model &lt;10s
This system loads the required time to visualize the 3D numeric model. After booting the system software, the process can be completed in 10 seconds by choosing to start with the finished visualized 3D digital model created, to display it in the software, and to complete the automatic registration of the 3D digital model with the real skeleton.

3. Clinical positioning accuracy &lt;1 mm
The deviation was defined as the difference between the planned screw pathway, based on a visualized 3D digital model or an intraoperative fluroscoply, and the actual positioning of the screw pathway.

4. 3D Reconstruction/Intelligent Registry Accuracy &lt;0.5 mm
The 3D model of the system’s reconstitution differed in shape and volume from that of the real skeleton, i.e. the reconstitution accuracy of the 3D model was ±0.5 mm. When automated intelligent registration was completed, the spatial position of the 3D model was displayed in real time as the difference between the spatial position of the actual skeleton and the spatial position of the 3D model, i.e. the 3D model’s intelligent registration accuracy was ±0.5 mm.
DOI: 10.17632/jw8yg7g7vc
title: Analysis of a limb-specific regulatory element in the promoter of the link protein gene

description: Supplemental to figure 1 of "Analysis of a limb-specific regulatory element in the promoter of the link protein gene." This supplemented figure 1 shows the details of the X-gal staining from embryos containing the -1020 and -690 nt Hapln-lacZ transgenes. Fig. 1. Link protein gene promoter constructs show in vivo expression patterns in either the skeleton or limb/genitalia. (A) Two different link protein promoter fragments consisting of the −1020 and −690 nt regions were tested in transgenic mice. (B) A representative E15.5 mouse transiently expressing the −1020 promoter region showed only X-gal staining in appendicular and axial cartilaginous skeletal tissues. A dark background was used to provide contrast to the photograph to allow easy visualization of the discrete expression in cartilage sites. (B-1) Sectioning showing staining in the tibia after X-gal and eosin counter-staining. (B-2) Immunofluorescence using antibody to Hapln1. (C) and (D) The shorter −690 promoter region demonstrated high-level expression in the limb and genitalia as shown in two representative mouse embryos. As shown, embryos showed variability of X-gal staining in the limb and hind paw regions. The embryos in C and D were dissected and either the paws (C1, D1; 5x) or genital tubercle (C2, D-2;20x) were examined by tissue-sectioning and counter-staining with eosin. In paws and genitalia mesenchymal cells show X-gal staining underneath the un-stained epithelial cells.
DOI: 10.17632/4s3fb7rcr5
title: Lion lords and sharing hyaenas: Carnivore guild dynamics around elephant carcasses.

description: Data and code to assess activity, activity peaks, and activity overlap in R, of carnivores at elephant carcasses in Madikwe Game Reserve
DOI: 10.17632/hbr8p7n526
title: Cross-regulation between TDP-43 and paraspeckles promotes pluripotency-differentiation transition. Modic et al

description: Sanger sequencing and confirmatory gel electrophoresis confirming the CRISPR-Cas9 edited human and mouse embryonic stem cells presented in the manuscript under review entitled "Cross-regulation between TDP-43 and paraspeckles promotes pluripotency-differentiation transition"
DOI: 10.17632/8f9zkdxgwd
title: Data for aqueous extract of Paeoniae Radix Rubra effect on coagulation and fibrinolytic functions within blood circulation system in deep vein thrombosis rats

description: The data presented herein are related to the research article entitled “Aqueous extract of Paeoniae Radix Rubra prevents deep vein thrombosis by ameliorating inflammation through inhibiting GSK3β activity”. This article describes the effect of aqueous extract of Paeoniae Radix Rubra effect on coagulation and fibrinolytic functions within blood circulation system in deep vein thrombosis (DVT) rats. The field dataset is made publicly available to enable critical or extended analyses.
DOI: 10.17632/pvtjfmmm3j
title: Effect of footcore exercises on navicular drop and plantar pressure distribution in asymptomatic individual with flatfoot

description: This study is RCT in which 10 asymptomatic flatfoot individual was recruited . The group is divided into two groups i.e., experimental group and control group . Footcore exercises protocol was made and given to experimental group and conventional therapy was given to control group.
DOI: 10.17632/msk8npw99x
title: A Scientometric Analysis of Four Decades of Scientific Production in Breast Imaging: Global Collaboration and Subject Areas

description: Dataset, Web of Science Raw data, Processed data, and Supplementary Materials for the following publication:
A bibliometrics review of Breast Imaging (BI)
DOI: 10.17632/nxsx55cjst
title: Temporal dynamics of the circulating antibody repertoire

description: original, unprocessed data for manuscript "Temporal dynamics of the circulating antibody repertoire"
DOI: 10.17632/t3m2nbd8t4
title: Predicting the distribution of COVID-19 through CGAN—Taking Macau as an example(Training set for machine learning)

description: Machine learning (ML) is an innovative method that is widely used in data prediction. Predicting the COVID-19 distribution using ML is essential for urban security risk assessment and governance. This study uses conditional generative adversarial network (CGAN) to construct a method to predict the COVID-19 hotspot distribution through urban texture and business formats and establishes a relationship between urban elements and COVID-19 so that machines can automatically predict the epidemic hotspots in cities. Taking Macau as an example, this method is used to determine the correlation between the urban texture and business hotspots of Macau and the new epidemic hotspot clusters. Different types of samples afforded different epidemic prediction accuracies. The results show the following: (1) CGAN can accurately predict the distribution area of COVID-19, and the accuracy can exceed 70%. (2) The results of predicting the COVID-19 distribution through urban texture and POI data of hospitals and stations are the best, with an accuracy of more than 60% in experiments in different regions of Macau. (3) The proposed method can also predict other areas in the city that may be at risk of COVID-19 and help urban epidemic prevention and control.
DOI: 10.17632/74kc4zngvf
title: 03 CA DMV Mileage and Disengagement Reports - Summary

description: The raw reports are provided in PDF format that are not searchable. This spreadsheet is created to summarize the reports data in field format.
DOI: 10.17632/cjpgb3dj99
title: Data for: Effect of 24-epibrassinolide on ROS and antioxidative defense systems in tall fescue under lead stress

description: Data results of all measured indicators including lead (Pb) content，photosynthetic pigment content，biomass accumulation, MDA content，H2O2 content,O2.- generation rate,free proline and soluble protein concentration, antioxidant enzymes activity (SOD, CAT, POD, APX) .