cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.917hb55/8
title: LC-MS peptide hydroxylation assay data files: PHD3 31-70

description: LC-MS raw data files acquired on an ACQUITY Xevo G2-S QToF mass spectrometer (Waters) which correspond to peptide hydroxylation assays presented in Figure 1 (and supplement). See "Peptide Raw file index" pdf for index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.917hb55/9
title: Peptide Raw file index

description: Index of MS runs (referenced to enzyme and substrate).
DOI: 10.5061/dryad.d0bh91n/10
title: Colour traits in Ischnura females

description: Presence of four colour traits in females of the damselfly genus Ischnura. Each row corresponds to a species. We recorded: the presence of a blue patch in male-coloured A-females, the presence of a blue patch in H-females, which are markedly different from males, the presence of an immature Aurantica colour phase and the presence of developmental pruinosity. Missing data is represented with a hyphen (-). For the presence of a blue patch in A- and H- females, "0" indicates the morph is absent in a species, "1" corresponds to continuous expression of the blue patch throughout development, "2" corresponds immature-only expression of the blue patch and "3" represents cases where the blue patch is not expressed at any point in development.
DOI: 10.5061/dryad.d0bh91n/11
title: Developmental expression of a colour signal in Ischnura damselflies

description: Developmental expression of an abdominal blue patch in damselflies of the genus Ischnura. Each row represents a species. Expression of the blue patch was categorized as "continuous" throughout development, "immature" or absent and was recorded separately for males and two heritable female morphs. In female-monomorphic species, expression of the trait in the missing morph cannot be recorded and is set to "NA".
DOI: 10.5061/dryad.d0bh91n/12
title: Expression of a blue patch in A-females

description: Data file used in BayesTraits analysis of the evolution of blue abdominal patch in A-females of the damselfly genus Ischnura. The first column gives species names and the second column shows the character states for the expression of the blue patch. "0" indicates A-females are absent in a species. "1" corresponds to continuous expression of the blue patch throughout development. "2" corresponds immature-only expression of the blue patch and "3" represents cases where A-females exist but do not express a blue patch at any point in development.
DOI: 10.5061/dryad.d0bh91n/13
title: Expression of a blue patch in A-females - missing morph to NA

description: Data file used in BayesTraits analysis of the evolution of blue abdominal patch in A-females of the damselfly genus Ischnura. The first column gives species names and the second column shows the character states for the expression of the blue patch. Here, species lacking the A-morph are treated as missing data (-). "1" corresponds to continuous expression of the blue patch throughout development. "2" corresponds immature-only expression of the blue patch and "3" represents cases where A-females exist but do not express a blue patch at any point in development.
DOI: 10.5061/dryad.d0bh91n/5
title: Effects of abdoment colour on mating probability

description: Mating activity in experimental trials with Ischnura elegans, where female abdomen colour was manipulated. Each row represents a female in a trial. There are two female-age categories and three heritable colour morphs.  The "Phenotype" column indicates the abdomen colour displayed by each female. The "Treat" column indicates whether such colour matches the actual developmental stage (control), advances the perceived developmental stage (forward) or conceals female maturity (reverse). Mating activity was not recorded (NA) when females died within the 24 h trial.
DOI: 10.5061/dryad.d0bh91n/6
title: Pilot experiment on the effects of female abdomen colour

description: Intersexual interactions in pilot trials where female abdomen colour was manipulated to alter their perceived developmental state. Each row represents a female in an experimental trial. Female age categories, heritable morphs and experimental treatments are the same as in the main experiment. The "Paint" column indicates whether control females were painted with their actual colour or not painted. We recorded male approaches to females, contacts, clasping attempts, tandem formation,mating activity, male-male contacts and female grooming activity.
DOI: 10.5061/dryad.d0bh91n/7
title: Ischnura alignment

description: Concatenated alignment of five loci and 41 species of Ischnura damselflies.
DOI: 10.5061/dryad.d0bh91n/8
title: Posterior trees

description: Sample of 1000 posterior trees drawn from phylogenetic inference of the genus Ischnura. Methods for phylogentic inference are described in the Appendix.
DOI: 10.5061/dryad.d0bh91n/9
title: Maximum a posteriori tree

description: Maximum a posteriori tree computed from phylogenetic inference of the damselfly genus Ischnura. Methods for phylogenetic inference are described in the Appendix.
DOI: 10.5061/dryad.hr62h5f/1
title: Drosophila Illumina genome assemblies

description: Illumina TruSeq gDNA libraries were prepared from adult females and sequenced with 100bp PE reads. Reads were error-corrected with BFC and assembled with IDBA.
DOI: 10.5061/dryad.k90h35k/6
title: Biederman et al (2019) sample ID numbers

description: Sample IDs and thermal treatment information of mitochondrial membranes prepared from cardiac ventricle of Chaenocephalus aceratus, Notothenia coriiceps, and Pseudochaenichthys georgianus. Measurements were performed in animals collected in the region of the Western Antarctic Peninsula during the austral fall season of 2015.
DOI: 10.5061/dryad.kc835.7/1.7
title: M6_v4.1_masked_PM.fa

description: Masked pseudomolecules of S. chacoense M6, containing 12 chromosomes
DOI: 10.5061/dryad.kc835.7/13.7
title: M6_v4.1_PM.fa

description: Pseudomolecules of S. chacoense M6, containing 12 chromosomes
DOI: 10.5061/dryad.kc835.7/14.7
title: Readme.txt
DOI: 10.5061/dryad.kc835.7/15.7
title: M6_v4.1_scaffold.agp

description: AGP file describing the assembly of S. chacoense M6 scaffolds within the pseudomolecules
DOI: 10.5061/dryad.kc835.7/16.7
title: m6.hc.gene_models.all_chrs_corrected.gff3

description: Generic feature format file (gff3) of high-confidence genes in S. chacoense M6, including ChrUn
DOI: 10.5061/dryad.kc835.7/17.7
title: M6_v4.1_PM_plus_chrUn.fa

description: Pseudomolecules of S. chacoense M6, containing 12 chromosomes and chrUn (unanchored scaffolds)
DOI: 10.5061/dryad.kc835.7/2.7
title: 523_3_assembly_ALLPATHS_v4.1.fasta

description: Genome assembly of S. chacoense M6, containing 8,260 scaffold sequences
DOI: 10.5061/dryad.kc835.7/3.7
title: short_summary_BUSCO_output.txt

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.kc835.7/4.7
title: full_table_BUSCO_output.tsv

description: Output file from running BUSCO on the genome assembly
DOI: 10.5061/dryad.nv89424/1
title: Zooid Size Data

description: Zooid (Module) size data used in the paper. Age span from late Jurassic to the Recent. Unique cheilostome species traceable to Paul D. Taylor's Scanning Electron Micrograph (SEM) collection deposited at the Natural History Museum, London
DOI: 10.5061/dryad.nv89424/2
title: New Zealand Pleistocene cheilostome species zooid size data

description: These data are from our previous publication (Liow L.H., Di Martino E., Krzeminska M, Ramsfjell M, Rust S., Taylor P.D. & Voje K.L. Relative size predicts competitive outcome through 2 million years. Ecology Letters 20: 981–988) but are needed to plot SI figure 1
DOI: 10.5061/dryad.nv89424/3
title: Geologic Stages

description: Data file needed by R code to make some of the plots. These are standard geologic stages
DOI: 10.17632/3z3wg3hd5m.3
title: Data for: A Multi-Aspect Study of Commercial Coatings Under the Effect of Surface Roughness and Fouling

description: The files uploaded include following: 1. Rt50.xlsx is the roughness data collected using TQC hull roughness gauge 2. Notepad files which are the torque data measured by the rotating disk facility
DOI: 10.17632/9tm4w2r8sk.1
title: Data for: Novel meriolin derivatives as rapid apoptosis inducers

description: Supporting Information of preparative details, characterization, and NMR spectra
DOI: 10.17632/knmzf25dj2.1
title: Data for: Astronomical cycles and variations in sediment accumulation rate of the terrestrial Early Cretaceous Xiagou Formation from the Jiuquan Basin, NW China

description: GR series of the Xiagou Formation in four wells including Liu 8 well, Long 14 well, Q2-36 well and Liu 9 well, and total organic carbon content of the Xiagou Formation in Liu 9 well.
DOI: 10.17632/mrr6c6m3f5.1
title: Mobile Call Frequency Analysis Dataset for Fog-based Inclusion Analysis

description: The dataset comprises the following fields: 1. RegistrationID: This represents the registration id that is created when any new call is initiated. 2. SubscriberID: The ID is linked with the customer who makes the call. 3. Date: This field shows the date of making the call. For our simulation, we have considered dates of a week starting from 1st December, 2018 to 7th December, 2018. 4. CallEvent: Call event field depicts the event id when the call is initiated. 5. M: M represents the source mobile number. Here we are considering M as the user's mobile number from where the call has been initiated. 6. M1: M1 represents the mobile number. This field is considered as Mobile number 1 i.e. the first mobile number who gets the call from M (source mobile). 7. M2: In the same way, M2 also shows the mobile number. This field is considered as Mobile number 2 i.e. the second mobile number who gets the call from M (source mobile). 8. M3: M3 shows the called mobile number. This field is considered as Mobile number 3 i.e. the third mobile number who gets the call from M (source mobile). 9. M4: M4 also shows the called mobile number. This field is considered as Mobile number 4 i.e. the fourth mobile number who gets the call from M (source mobile). 10. M5: As above, M5 also shows the called mobile number. This field is considered as Mobile number 5 i.e. the fifth mobile number who gets the call from M (source mobile). This dataset represents the frequency of call details where M (source) calls to M1, M2, M3, M4 and M5 on a perticluar date with particular SubscriberID, RegistrationID and CallEvent.
DOI: 10.17632/ngsc82hm6r.1
title: Data for: P311, a novel intrinsically disordered protein, regulates adipocyte development

description: PDB file for monomeric and trimeric structure prediction for P311 protein.
DOI: 10.17632/spyz3ttt98.1
title: Data for: P311, a novel intrinsically disordered protein, regulates adipocyte development

description: P311 protein structure PDB file
DOI: 10.17632/w79d32cp9v.1
title: Data for: A comparison of transport methods for the solution of a problem with shadowing effects in spherical geometry

description: Figures for the manuscript
DOI: 10.7281/t1/1ecvb0/yiprh4
title: DustOff-monthly-average_wrfout_d01_2015-04_06_mean.nc
DOI: 10.17632/6vk54mggfg.1
title: Aggressive mimicry in Cretaceous bugs

description: SUMMARY Mimicry is ubiquitous in nature, yet understanding its origin and evolution is complicated by the scarcity of exceptional fossils that enable behavioural inferences about extinct animals. Here we report bizarre true bugs (Hemiptera) that closely resemble beetles (Coleoptera) from mid-Cretaceous amber. The unusual fossil bugs are described as Bersta vampirica gen. et sp. nov. and B. coleopteromorpha gen. et sp. nov., and are placed into a new family, Berstidae fam. nov. The specialised mouthparts of berstids indicate that they were predaceous on small arthropods and their striking beetle-like appearance implies that they mimicked beetles to attack unsuspecting prey; this unique association is not seen among extant insects and represents the first case of aggressive mimicry in the invertebrate fossil record. This rare example of fossilised behaviour enriches our understanding of the palaeoecological associations and extinct behavioural strategies of Mesozoic insects.
DOI: 10.17632/7gmcvftfwj.1
title: FE-CLIP: A tool for the calculation of the solid–liquid interfacial free energ

description: In manufacturing industries, predicting the work of adhesion between complex solid and liquid surfaces has become essential. FE-CLIP offers a routine for evaluating the work of adhesion between solid and liquid surfaces by calling a subroutine from a molecular dynamics simulation code. When FE-CLIP is applied to the solid–liquid interface, liquid molecules are separated from the solid surface according to its shape using a set of spherical potentials. This is efficient when applied to the solid surfaces with complex structures such as polymer-grafted surfaces. An adaptive scheme for updating the parameters contained in the potential and automatic refinement of integration points are introduced to facilitate the application of FE-CLIP to various solid–liquid interfaces. We applied FE-CLIP to the separation of water from a polymer-grafted gold surface to demonstrate that the proposed method gives reliable results by suppressing the variation of the free energy gradient, which is important for accurate numerical integration.
DOI: 10.17632/rwyd5k5rjh.1
title: DIAPHANE: A portable radiation transport library for astrophysical applications

description: DIAPHANE is a portable, scalable, and extensible library for modelling the transport of energy by radiation or relativistic particles (in particular neutrinos). Energy transport modelling is crucial for the hydrodynamic modelling of a wide range of astrophysical phenomena such as planet and galaxy formation, supernova explosions, and cosmic structure evolution. The DIAPHANE library provides a computational framework and functionality to incorporate energy transport modelling into hydrodynamical astrophysics simulations. The transport routines are called from, and operate independently of, the underlying hydrodynamic code of choice. It is designed to be utilized by hydrodynamic astrophysical simulations through a simplified interface layer, allowing it to operate independently of the underlying hydrodynamic code. We provide a sample interface layer to three widely-used astrophysics-focussed smoothed-particle hydrodynamic codes, GADGET2, GASOLINE and SPHYNX. The initial release comprises a particle-based implementation of Flux Limited Diffusion and Starrad, a ray casting method that we have developed. DIAPHANE development has been supported the Platform for Advanced Scientific Computing.
DOI: 10.7281/t1/1ecvb0/0myg17
title: DustOff-monthly-average_wrfout_d01_2012-03_00_mean.nc
DOI: 10.7281/t1/1ecvb0/3xohgk
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-05_06_std.nc
DOI: 10.7281/t1/1ecvb0/aap1e6
title: DustOff-monthly-average_wrfout_d01_2012-07_06_mean.nc
DOI: 10.7281/t1/1ecvb0/ayxkwa
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-05_00_std.nc
DOI: 10.7281/t1/1ecvb0/cmiiur
title: DustOff-monthly-average_wrfout_d01_2015-10_06_mean.nc
DOI: 10.7281/t1/1ecvb0/dz6my7
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-03_18_std.nc
DOI: 10.7281/t1/1ecvb0/eojn0k
title: DustOff-monthly-average_wrfout_d01_2015-09_06_mean.nc
DOI: 10.7281/t1/1ecvb0/f2m0r3
title: DustOff-monthly-average_wrfout_d01_2012-10_12_mean.nc
DOI: 10.7281/t1/1ecvb0/hxi2to
title: DustOff-monthly-average_wrfout_d01_2015-08_18_mean.nc
DOI: 10.7281/t1/1ecvb0/ixinw3
title: DustOff-monthly-average_wrfout_d01_2012-06_00_mean.nc
DOI: 10.7281/t1/1ecvb0/m2ackh
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-08_06_std.nc
DOI: 10.7281/t1/1ecvb0/mukfhh
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-03_06_std.nc
DOI: 10.7281/t1/1ecvb0/ojl3pe
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-09_12_std.nc
DOI: 10.7281/t1/1ecvb0/qwzfqt
title: DustOff-monthly-average_wrfout_d01_2012-04_12_mean.nc
DOI: 10.7281/t1/1ecvb0/tjtdkx
title: DustOff-monthly-average_wrfout_d01_2012-06_18_mean.nc
DOI: 10.7281/t1/1ecvb0/tzr511
title: DustOff-monthly-average_wrfout_d01_2012-09_12_mean.nc
DOI: 10.7281/t1/1ecvb0/uacx6l
title: DustOff-monthly-average_wrfout_d01_2015-08_00_mean.nc
DOI: 10.7281/t1/1ecvb0/uker3d
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-05_12_std.nc
DOI: 10.7281/t1/1ecvb0/wlv4ks
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-09_00_std.nc
DOI: 10.7281/t1/1ecvb0/yceie6
title: DustOff-monthly-average_wrfout_d01_2015-05_18_mean.nc
DOI: 10.7281/t1/1ecvb0/yhv0qv
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-05_18_std.nc
DOI: 10.17632/8fr82mx34x.1
title: Open systems fractionation factor Cerro Matoso

description: The research hypothesis is that clayish and muddish material collected at open pit mine in Cerro Matoso Ni-laterite deposit, correspond to marine sediments associated at hydrothermal systems instead of clays formed by the peridotite weathering. The data shows depleted δ13C and δ18O values in bulk sediments and carbonates that composed a succession of claystone and mudstone overlaying peridotites, sign a reducing environment with the influence of alkaline pH, and bacterial activity. The fractionation factor following the Zhang et al. (2001) equation, indicate in different set of samples precipitation temperatures over 50ºC and reaching 160ºC which fit with a hydrothermal activity instead of supergene groundwaters during the mineral precipitation. Different modeling of δ13C show the reacted fraction assuming FeCO3 and CH4 as products 1 and 2 respectively, in a H2S pool, and will confirm an environment rich in CH4 for the siderite formation.Isotopic analysis of siderite was accomplished by reacting a subsample (10–48 mg dry weight) with 100% phosphoric acid in a Pyrex vessel at 75°C. Reaction was terminated after 2 days, at which time CO2 was no longer produced, and the reaction was considered completed. The evolved CO2 was used for calculation of siderite abundance in the subsample and for analysis of oxygen and carbon isotope compositions. Isotope measurements were carried out at the Stable Isotope Laboratory of the Estación Experimental del Zaidín (CSIC, Granada, Spain). Isotopic ratios were measured by a Finnigan MAT 251 mass spectrometer. To interpret dataset the calculation was done first for all isotope results, and then grouping the data δ13C or δ18O, according to the lithofacies to which they correspond: mound facies or tabular bed facies, the later correspond to metalliferous sediments. Data are formulated, so it is possible to change the constant KIE, delta 2 or delta 1 to see how is the graphs changes. Graphs also are linked with data. For δ18O fractionation factor all data are formulated to obtain δ18O and T in Kelvin degrees in the first table and the according with their affinity (siderite, clasystone or metalliferous) in tables below.
DOI: 10.17632/nhfp6nsr6n.1
title: Smoothed Dissipative Particle Dynamics package for LAMMPS

description: An isothermal implementation of Smoothed Dissipative Particle Dynamics (SDPD) for LAMMPS is presented. SDPD is useful for hydrodynamics simulations at mesoscale where the effect of thermal fluctuations are important, but a molecular dynamics simulation is prohibitively expensive. We have used this package to simulate diffusion of spherical colloids. The results (particularly the long-time behaviour of velocity autocorrelation function) are in agreement with theoretical models that take hydrodynamic interactions into account.
DOI: 10.17632/w2dwd9s7mt.1
title: Molecular docking and ADMET prediction of natural compounds towards SARS Spike glycoprotein-human angiotensin converting enzyme 2 and SARS-CoV-2 main protease

description: This in silico study evaluated the binding affinities of some natural products (resveratrol, xylopic acid, ellagic acid, kaempferol, and quercetin) to human angiotensin converting enzyme 2 and coronavirus (SARS-coV-2) main protease compared to chloroquine, an inhibitor known to prevent the cellular entry and replication of coronavirus. The respective binding energies of the selected natural compounds, and chloroquine were towards the proteins were computed using Pyrex Virtual Screening tool. The pharmacodynamic and pharmacokinetic attributes of the selected compounds were predicted using admetSAR. The molecular docking analysis showed the natural compoundshad the better scores towards the selected protein compared to chloroquinewith polar amino acid residues present at the binding sites.The predicted ADMET properties revealedthe natural products lower acute oral toxicity compared to chloroquine. The study provided evidence suggesting that the relatively less toxic natural compounds could be repositioned as anti-viral agents to prevent the entry and replication of SARS-CoV-2.
DOI: 10.17632/ys5mpgjfc8.1
title: AtomREM: Non-empirical seeker of the minimum energy escape paths on many-dimensional potential landscapes without coarse graining

description: Recently a non-empirical stochastic walker algorithm has been developed to search for the minimum-energy escape paths from the minima of the potential surface (Akashi and Nagornov, 2018; Nagornov and Akashi, 2019). This method is based on the Master equation for the distribution function of the atomic configuration which has a nature to seek the reaction path up along the valley of the potential surface. This paper introduces AtomREM (Atomistic Rare Event Manager), which is an MPI parallelized solver program package for executing this method, which yields reaction pathways in terms of the microscopic evolution of atomic positions. It is open-source and released under the GNU General Public License (GPL). A feature AtomREM interfaces with the LAMMPS Molecular Dynamics Simulator as a library of versatile potential functions for application to various systems. Examples of the applications to molecular and solid systems are presented.
DOI: 10.5281/zenodo.3746625
title: Portatiles

description: Dataset con datos en bruto de ordenadores portátiles, extraído de la página web de MediaMarkt
DOI: 10.7281/t1/1ecvb0/3sewoq
title: DustOff-monthly-average_wrfout_d01_2012-06_12_mean.nc
DOI: 10.7281/t1/1ecvb0/9sck25
title: DustOff-monthly-average_wrfout_d01_2016-03_00_mean.nc
DOI: 10.7281/t1/1ecvb0/a8d3p5
title: DustOff-monthly-average_wrfout_d01_2016-10_12_mean.nc
DOI: 10.7281/t1/1ecvb0/ardmw2
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-04_06_std.nc
DOI: 10.7281/t1/1ecvb0/bgmav0
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-04_18_std.nc
DOI: 10.7281/t1/1ecvb0/cxxv0f
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-08_00_std.nc
DOI: 10.7281/t1/1ecvb0/fsrnqh
title: DustOff-monthly-average_wrfout_d01_2016-06_00_mean.nc
DOI: 10.7281/t1/1ecvb0/hy9z01
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-10_06_std.nc
DOI: 10.7281/t1/1ecvb0/jph87z
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-09_06_std.nc
DOI: 10.7281/t1/1ecvb0/kbkh6y
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-09_18_std.nc
DOI: 10.7281/t1/1ecvb0/mcfcjt
title: DustOff-monthly-standard-deviation_wrfout_d01_2010-10_18_std.nc
DOI: 10.7281/t1/1ecvb0/nwlxcj
title: DustOff-monthly-average_wrfout_d01_2016-04_12_mean.nc
DOI: 10.7281/t1/1ecvb0/ojicvw
title: DustOff-monthly-average_wrfout_d01_2012-05_06_mean.nc
DOI: 10.7281/t1/1ecvb0/p7wyql
title: DustOff-monthly-average_wrfout_d01_2012-04_00_mean.nc
DOI: 10.7281/t1/1ecvb0/pfn70m
title: DustOff-monthly-average_wrfout_d01_2016-06_18_mean.nc
DOI: 10.7281/t1/1ecvb0/qs7mzg
title: DustOff-monthly-average_wrfout_d01_2012-03_12_mean.nc
DOI: 10.7281/t1/1ecvb0/scoxjx
title: DustOff-monthly-average_wrfout_d01_2016-03_18_mean.nc
DOI: 10.7281/t1/1ecvb0/sjnba6
title: DustOff-monthly-average_wrfout_d01_2012-09_00_mean.nc
DOI: 10.7281/t1/1ecvb0/syq3wr
title: DustOff-monthly-average_wrfout_d01_2016-09_00_mean.nc
DOI: 10.7281/t1/1ecvb0/tsggbi
title: DustOff-monthly-average_wrfout_d01_2012-10_18_mean.nc
DOI: 10.7281/t1/1ecvb0/tznflq
title: DustOff-monthly-average_wrfout_d01_2012-08_06_mean.nc
DOI: 10.7281/t1/1ecvb0/xbrb5t
title: DustOff-monthly-average_wrfout_d01_2016-07_06_mean.nc