cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57760/sciencedb.06672
title: Single-cell RNA sequencing reveals the gonadal dynamic changes of sex differentiation in hermaphroditic protogynous orange-spotted grouper, Epinephelus coioides
title: Single-cell RNA sequencing reveals the gonadal dynamic changes of sex differentiation in hermaphroditic protogynous orange-spotted grouper, Epinephelus coioides

description: Sex differentiation is a complex process that requires many factors to regulate proliferation, differentiation, development, and organization of the gonads. In teleosts, the molecular mechanisms of sex differentiation are diverse and unclear, especially in hermaphrodite fish. In the present study, 15 cell types, including germ cells, follicle cells, and theca cells, and so on, were identified using single-cell RNA sequencing (scRNA-seq) in the gonads during sex differentiation in a hermaphrodite fish, orange-spotted grouper (Epinephelus coioides). Two pre-follicle cell types were defined, and the differentiating trajectories of the follicle cells were outlined. Notably, both pre-follicle and follicle cells highly expressed male-related genes synchronously, such as amh, sox9, and dmrt3 in pre-follicle cells, as well as dmrt1 in follicle cells. Oocyte possessed two distinct states, with high expression of oocyte development related genes in one state and spermatogenesis related genes in the other state, respectively. Our results provide novel insights into cell types and lineage tracing in the gonads during sex differentiation in hermaphrodite species.
description: Sex differentiation is a complex process that requires many factors to regulate proliferation, differentiation, development, and organization of the gonads. In teleosts, the molecular mechanisms of sex differentiation are diverse and unclear, especially in hermaphrodite fish. In the present study, 15 cell types, including germ cells, follicle cells, and theca cells, and so on, were identified using single-cell RNA sequencing (scRNA-seq) in the gonads during sex differentiation in a hermaphrodite fish, orange-spotted grouper (Epinephelus coioides). Two pre-follicle cell types were defined, and the differentiating trajectories of the follicle cells were outlined. Notably, both pre-follicle and follicle cells highly expressed male-related genes synchronously, such as amh, sox9, and dmrt3 in pre-follicle cells, as well as dmrt1 in follicle cells. Oocyte possessed two distinct states, with high expression of oocyte development related genes in one state and spermatogenesis related genes in the other state, respectively. Our results provide novel insights into cell types and lineage tracing in the gonads during sex differentiation in hermaphrodite species.
DOI: 10.57760/sciencedb.06648
title: Raw reads of 16S rRNA gene amplicon libraries of the five lake regions across China including 47 lakes
title: Raw reads of 16S rRNA gene amplicon libraries of the five lake regions across China including 47 lakes

description: 来自中国五大湖区（东部平原湖区，蒙新湖区，东北平原与山地湖区，青藏高原湖区以及云贵高原湖区）的47个湖泊的水体样本的16S rRNA基因扩增子的原始数据，数据采集于2021年6月至9月
description: 来自中国五大湖区（东部平原湖区，蒙新湖区，东北平原与山地湖区，青藏高原湖区以及云贵高原湖区）的47个湖泊的水体样本的16S rRNA基因扩增子的原始数据，数据采集于2021年6月至9月
DOI: 10.57760/sciencedb.06650
title: root-associated microbial in constructed wetlands
title: root-associated microbial in constructed wetlands

description: To understand the response of plant and root-associated microorganism to phosphorus chemical industry tailwater, we collected the plant and root-associated microorganism samples after one year of constructed wetlands operation. The samples were marked as HCW. For the control analysis, we also collected the same plant species and their root-associated microorganism samples marked as LCW in nearby constructed wetlands which received the tailwater of an integrated sewage treatment plant.For root-associated microorganism samples collection, surface substrates of the plant were removed, and the sterile tweezers and scissors were used to collect the plant roots into a 50 ml sterile centrifugal tube, and then the tube was put into dry ice for quick freezing. 25 mL of 1 × PBS buffer were used to wash the root when brought back to the laboratory, and sonicated for 5 min, vortexed 1min, repeating three times. After removing the roots with sterile tweezers, PBS solution was filtered through 0.22 μm sterile membranes to extract root-associated microorganism, which was then kept at 80 °C.
description: To understand the response of plant and root-associated microorganism to phosphorus chemical industry tailwater, we collected the plant and root-associated microorganism samples after one year of constructed wetlands operation. The samples were marked as HCW. For the control analysis, we also collected the same plant species and their root-associated microorganism samples marked as LCW in nearby constructed wetlands which received the tailwater of an integrated sewage treatment plant.For root-associated microorganism samples collection, surface substrates of the plant were removed, and the sterile tweezers and scissors were used to collect the plant roots into a 50 ml sterile centrifugal tube, and then the tube was put into dry ice for quick freezing. 25 mL of 1 × PBS buffer were used to wash the root when brought back to the laboratory, and sonicated for 5 min, vortexed 1min, repeating three times. After removing the roots with sterile tweezers, PBS solution was filtered through 0.22 μm sterile membranes to extract root-associated microorganism, which was then kept at 80 °C.
DOI: 10.15468/dl.r45unf
title: Occurrence Download

description: A dataset listing the 374 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Bird Monitoring Data"
 ]
}

 The dataset's 374 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000545-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.06660
title: ch-sims
title: ch-sims

description: multimodal sentiment analysis dataset
description: multimodal sentiment analysis dataset
DOI: 10.57760/sciencedb.06664
title: RAW EEG Data
title: RAW EEG Data

description: Raw EEG data after preprocessing，There are three folders in the compressed package, corresponding to three experiments: resting state, STB, Raven.
description: Raw EEG data after preprocessing，There are three folders in the compressed package, corresponding to three experiments: resting state, STB, Raven.
DOI: 10.57760/sciencedb.06676
title: Distinguishing high-harmonic generation from surface and bulk states in topological insulator Bi2Se3
title: Distinguishing high-harmonic generation from surface and bulk states in topological insulator Bi2Se3

description: We demonstrated a scheme to differentiate the high-harmonic generation (HHG) originating from the surface states and bulk states of thetopological insulator (TI) Bi2Se3. By adopting two-color mid-infrared laser fields on Bi2Se3, we found that the nonlinear response sensitivelydepends on the relative phase of the driving fields. The even harmonics arising from the surface states with a clear signature, whose modulationperiod equals the cycle of the second-harmonic generation (SHG) field. We reveal that the weak SHG perturbs the nontrivial dipole phase ofthe electron-hole pair in surface states, and thus leads to the modulation of HHG. It provides a means to manipulate the ultrafast dynamics insurface states through adopting a weak perturbing laser field.
description: We demonstrated a scheme to differentiate the high-harmonic generation (HHG) originating from the surface states and bulk states of thetopological insulator (TI) Bi2Se3. By adopting two-color mid-infrared laser fields on Bi2Se3, we found that the nonlinear response sensitivelydepends on the relative phase of the driving fields. The even harmonics arising from the surface states with a clear signature, whose modulationperiod equals the cycle of the second-harmonic generation (SHG) field. We reveal that the weak SHG perturbs the nontrivial dipole phase ofthe electron-hole pair in surface states, and thus leads to the modulation of HHG. It provides a means to manipulate the ultrafast dynamics insurface states through adopting a weak perturbing laser field.
DOI: 10.57760/sciencedb.o00009.00388
title: Atmospheric electric field variability observation data set for the Qinghai-Tibet Plateau
title: 青藏高原大气电场变化观测数据集

description: Atmospheric electric field observations and meteorological activity observations at Gar Station, Tibet, China, for the period November 2021-October 2022.
description: Atmospheric electric field observations and meteorological activity observations at Gar Station, Tibet, China, for the period November 2021-October 2022.
DOI: 10.57760/sciencedb.06683
title: Effects of layered soil on the accumulation and leaching of nitrate nitrogen in shallow groundwater region
title: 地下水浅埋区层状土壤结构对包气带硝态氮累积和淋失的影响

description: Excessive nitrogen application in agriculture causes the accumulation of nitrate nitrogen in the vadose zone, andintensifies nitrate pollution in groundwater. The heterogeneous layered soil exists relatively common in nature, and it plays an important role in controlling pollutants entering the groundwater from the surface. The heterogeneous layered soil also widespreadly exist in the low plain area of North China, and this area is sensitive for groundwater pollution due to its shallow groundwater burial and short nitrate leaching path. Thus, it is of great significance to clarify the influence of heterogeneous layered soil structure on NO3−-N migration process to prevent nitrate pollution in groundwater. In this study, four typical soil profiles including heterogeneous and relatively homogeneous, and two land uses were selected in Nan-pi County located in Cangzhou City of Hebei Province.
description: Excessive nitrogen application in agriculture causes the accumulation of nitrate nitrogen in the vadose zone, andintensifies nitrate pollution in groundwater. The heterogeneous layered soil exists relatively common in nature, and it plays an important role in controlling pollutants entering the groundwater from the surface. The heterogeneous layered soil also widespreadly exist in the low plain area of North China, and this area is sensitive for groundwater pollution due to its shallow groundwater burial and short nitrate leaching path. Thus, it is of great significance to clarify the influence of heterogeneous layered soil structure on NO3−-N migration process to prevent nitrate pollution in groundwater. In this study, four typical soil profiles including heterogeneous and relatively homogeneous, and two land uses were selected in Nan-pi County located in Cangzhou City of Hebei Province.
DOI: 10.15468/dl.4garja
title: Occurrence Download

description: A dataset containing 12595551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.5.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 12595551 records from 768 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000532-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57760/sciencedb.06684
title: The process of soil desiccation under artificial shrub and grass in northern Loess Plateau．
title: 黄土高原北部人工灌草植被土壤干燥化过程研究

description: The water-wind erosion crisscross region which located in Northern Loess Plateau is a typical ecologically fragile area. Soil desiccation occurs frequently under artificial shrubs and grass. The formation of dried soil layer (DSL) affects small biological cycles, weakens big hydrological cycle and seriously affects vegetation construction and regional ecological stability. To understand the process of formation and evolvement of dried soil layer (DSL) soil desiccation under artificial shrub and grasscaragana and alfalfa in loess plateau, and to determine the suitable planting years, caragana and alfalfa were selected as two typical shrub and grass, respectively to analyze the dynamics and of soil moisture and aboveground biomass  of the two plants with different growing years were analyzed. 
description: The water-wind erosion crisscross region which located in Northern Loess Plateau is a typical ecologically fragile area. Soil desiccation occurs frequently under artificial shrubs and grass. The formation of dried soil layer (DSL) affects small biological cycles, weakens big hydrological cycle and seriously affects vegetation construction and regional ecological stability. To understand the process of formation and evolvement of dried soil layer (DSL) soil desiccation under artificial shrub and grasscaragana and alfalfa in loess plateau, and to determine the suitable planting years, caragana and alfalfa were selected as two typical shrub and grass, respectively to analyze the dynamics and of soil moisture and aboveground biomass  of the two plants with different growing years were analyzed.
DOI: 10.57760/sciencedb.06685
title: Alignments of the ITS, matK, psbA-trnH and rbcL sequences of 16 cultivars evergreen rhododendrons
title: Alignments of the ITS, matK, psbA-trnH and rbcL sequences of 16 cultivars evergreen rhododendrons

description: Alignments of the ITS, matK, psbA-trnH and rbcL sequences of 16 cultivars evergreen rhododendrons used for phylogenetic analysis.
description: Alignments of the ITS, matK, psbA-trnH and rbcL sequences of 16 cultivars evergreen rhododendrons used for phylogenetic analysis.
DOI: 10.15468/dl.3zmw44
title: Occurrence Download

description: A dataset listing the 19179 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.1691 -0.85257,-71.25344 -0.85257,-71.25344 2.82814,-75.1691 2.82814,-75.1691 -0.85257))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 19179 records were derived from 427 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000537-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/59cs8gj76c.1
title: Untargeted metabolomics data from the analysis of craft and industrial beers, and craft beer brewing samples

description: This dataset contains metabolomics data from analyzing craft beers, industrial beers, and brewing samples of an in-production wheat ale craft beer. Data was acquired via an Agilent LC-MS system, obtained both in positive and negative ionization modes. Raw data from the instrument was converted to the mzXML format via ProteoWizard MSConvert.
DOI: 10.15468/dl.x7jyeu
title: Occurrence Download

description: A dataset containing 8480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Callipepla douglasii)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 8480 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084667-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vvnc3k
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acanthoscelides obtectus",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084666-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/hkk-kea-t0v
title: Ursus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mh9-lt7-sc8
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wzd-g36-d6j
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zh2-7ng-c95
title: †Staringia Veen, 1936

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/kw0-jd7-6rq
title: Hofkerina Chapman & Parr, 1931

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mss-wq8-fs5
title: †Daviesina Smout, 1954

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nbz-bat-nl1
title: Cythereis (Cythereis) Jones, 1849

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.xyb9u4
title: Occurrence Download

description: A dataset containing 297592 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "TaxonKey is Solanaceae",
 "HasGeospatialIssue is false"
 ]
 },
 {
 "and" : [
 "TaxonKey is one of (Solanum [GBIF Backbone Taxonomy])",
 "BasisOfRecord is one of (Occurrence evidence)"
 ]
 }
 ]
}

 The dataset includes 297592 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023037-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/959-r1t-v04
title: †Stomatorbina binkhorsti (Reuss, 1862)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wnb-q10-8f2
title: Miniacina miniacea (Pallas, 1766)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/654-h3z-a7n
title: Amphistegina lessonii d'Orbigny in Deshayes, 1830

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dea-q71-q3v
title: Baculogypsinoides spinosus Yabe & Hanzawa, 1930

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a2x-9cz-59h
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x9t-wsj-ndl
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j1m-vvs-td5
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6zh-w1t-4sd
title: †Radiolites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/c63-pey-t4m
title: Chordata

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qmp-3wp-lh1
title: Cassidulina laevigata d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yhp-gl3-nlt
title: Cassidulina laevigata d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/50c-5pk-2qc
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vre-k49-g06
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fl0-yg0-fwr
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mzd-v7c-g4d
title: Eponides repandus (Fichtel & Moll, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25574/26218
title: Chandra X-ray Observatory ObsId 26218

description: THE COLLIMATION AND ENERGETICS OF SHORT GRBS: SEARCHING FOR JET-BREAKS WITH CHANDRA
DOI: 10.3535/nf0-n1q-966
title: Ostracoda Latreille, 1802

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2n5-be8-9n9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v44-dk0-260
title: †Stilostomella Guppy, 1894

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/sly-y59-ha9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wk7-mhc-qt0
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7et-wjp-fmm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b91-bkv-rvt
title: Dendritina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jjf-rgc-eby
title: Cibicides Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0e9-547-l29
title: †Morozovella velascoensis (Cushman, 1925)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e6s-w2f-z73
title: †Repandocosta hollandica (Kuiper, 1918) Hazel, 1967

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/528-7p7-6z9
title: Lachlanella undulata (d'Orbigny, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6n0-sml-qga
title: Pyrgo depressa (d'Orbigny, 1826)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/6dc-3j7-lpf
title: Pseudopus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/f4t-yls-0jk
title: Lachlanella undulata (d'Orbigny, 1852)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/btc-nqq-eh5
title: Apodemus sylvaticus (Linnaeus, 1758)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25549/inscriptifact-ouc15278670
title: Stone Fragment, Syllabic Cypriot

description: [Text Description:] Inscription in Old Paphian syllabary ❧ [Medium:] Stone ❧ [Script Note:] Old Paphian Syllabary, Cypriot Syllabary ❧ [Physical Object Description:] Stone fragment, broken off to form right triangle, approx. 29.2 cm x 23 cm
DOI: 10.25549/inscriptifact-ouc15278667
title: Inscribed potsherd Inscr. Ph. 17

description: [Text Description:] Fragmentary inscription ❧ [Medium:] Clay ❧ [Script Note:] Phoenician ❧ [Physical Object Description:] Triangular potsherd 6.7 cm ❧ 4.4 cm, insiced inscription along top, broken off
DOI: 10.25549/inscriptifact-ouc15264430
title: Blue glass scarab with horses 1

description: [Text Description:] Blue glass scarab with horses 1 ❧ [Excavation Description:] unprovenanced ❧ [Medium:] Glass ❧ [Physical Object Description:] Blue glass scarab seal, 2.8 cm x 2.15 cm
DOI: 10.25549/inscriptifact-ouc15278392
title: Mathematical Problem Text 4669

description: [Text Description:] Mathematical problem text in Sumerian and Akkadian ❧ [Excavation Description:] Unprovenanced; possibly from Kish. Probably acquired between 1911-1919. ❧ [Medium:] Clay ❧ [Script Note:] Non-Alphabetic Cuneiform ❧ [Physical Object Description:] Cuneiform tablet
DOI: 10.25549/inscriptifact-ouc15264305
title: Blue glass scarab with horses 2

description: [Text Description:] Blue glass scarab with horses 2 ❧ [Excavation Description:] unprovenanced ❧ [Medium:] Glass ❧ [Physical Object Description:] Blue glass scarab seal, 2.6 cm x 1.93 cm