cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/rprx2k946t.2
title: Figures and table of Electrochemical behavior of an aluminum alloy 2024-T3 exposed to bacteria obtained from Thailand’s environment

description: The published document is related to results obtained from Microbiologically Influence Bacteria characterized by LSV and polarized EIS.
DOI: 10.17632/ppcg3zb243.1
title: data and code for "Host type and pricing on Airbnb: Seasonality and perceived market power"

description: Data and code to reproduce the results of the paper using python
DOI: 10.17632/3jkm6twdcg.2
title: Sobre la clasificación de los dialectos de las lenguas romano-alemanas

description: The article deals with the problems of some contact and mixed languages, dialects, the nature of their emergence and further development
DOI: 10.17632/d4hjdyczth.1
title: Search query's & covid cases /death in Russia 2020-2021

description: Monthly search query's statistics from yandex (russian search engine) & covid-19 cases and deaths in Russia 2020-2021 from January to January. This data can be used to data& correlation analysis. See our results at: https://search-covid.herokuapp.com
DOI: 10.17632/77w69zsbp6.2
title: Supplemental File JDS19674 - Maternal supplementation with cobalt sources, folic acid, and rumen protected methionine and its effects on molecular and functional correlates of the immune system in neonatal Holstein calves - DOI: 10.3168/jds.2020-19674

description: Supplemental File JDS19674 - Maternal supplementation with cobalt sources, folic acid, and rumen protected methionine and its effects on molecular and functional correlates of the immune system in neonatal Holstein calves - DOI: 10.3168/jds.2020-19674
DOI: 10.17632/jvm986mr8n.1
title: MD_Kozaev_Dataset

description: Data contains information about board of directors structure of IPO companies from 2010 to 2019 across emerging markets. Based on this data different hypotheses regarding board impact on underpricing and performance were tested. Results showed that independence, diversity and other factors have effect on IPO that differs across industries.
DOI: 10.17632/ssdbwvsrm9.1
title: Dataset for publication: "The benefits of co-evolutionary Genetic Algorithms in voyage optimisation"

description: The Dataset is separated according to the cases used within the publication: - Case 1: Dalian -&gt; San Francisco - Case 2: Southampton -&gt; Karachi - Case 3: New York -&gt; Oslo Within each dataset 3 files and 1 folder are included: a) First_order_approx.csv - contains information about first order approximation according to which the mesh was built, as for each node. b) Mesh.csv - contains information about the mesh used within optimisation procedure as . c) Mesh_map.png - visualisation of Mesh.csv, where: red crosses represent ; blue crosses represent ; and purple squares represent . d) Weather_data folder - where all weather data is stored in a binary format: - Weather_grid_sizes - defines size of the respective weather data as set of long/lat and resolution (step) - Naming of the files follows format: type.resolution-date_of_start-time_of_start-time_offset.bin e.g. "hycom.0p08-20180813-t00z-003" is for "hycom" type with resolution of 0.08 degree; starting on 2018-08-13 at 00 hours (12:00 am), with 3h offset from starting date/time (so in this case it is data for 03:00 am on 13-08-2018). - "Hycom" type contains raw currents data as single precision floating point values for ocean components: (U-speed, V-speed, temperature, salinity). - "Wave" type contains raw waves data as single precision floating point values of wave components: (height, direction, period). - "Wind" type contains raw winds data as single precision floating point values for wind components: (U-speed, V-speed).
DOI: 10.17632/vkkw8gsvdg.2
title: Color Biogenesis of Tomatoes

description: Controlled postharvest stresses were used to induce the synthesis of carotenoids in tomato fruit. The accumulation of carotenoids was observed by the change of color of the tomato fruit from green to red. This change of color was monitored by the a* value and hue of the CIELAB* color coordinates in which the a* value increased following a sigmoidal curve and hue decreased in a similar trend. This sigmoidal curve marked the transition from chloroplasts to chromoplasts; in other words, the change of color tracked the disorganization or degreening, which was simultaneously accompanied by chromoplast biogenesis or red color development when tomatoes were at the Turning stage of development. The color data and photographic images provides information on how heat stress affected the synchronicity of chloroplast disorganization and chromoplast biogenesis in the early developmental stages of tomato ripening.
DOI: 10.17632/s752ybntpt.1
title: Masters - Amanda Juraski

description: Data set from the "Ibuprofen loaded chitosan films for drug delivery in spinal cord injury" Masters' degree project, supervised by Prof. Sônia Malmonge and Prof. Juliana Daguano at UFABC (2016-2018).
DOI: 10.17632/9v87x4jmwt.1
title: A warm tea: the role of temperature and hydroperiod on litter decomposition in temporary wetlands
DOI: 10.17632/5r7c48xkbw.1
title: A blood-based prognostic liver secretome signature and long-term hepatocellular carcinoma risk in advanced liver fibrosis

description: Background Accurate non-invasive prediction of long-term hepatocellular carcinoma (HCC) risk in advanced liver fibrosis is urgently needed for cost-effective HCC screening; however, this currently remains an unmet need. Methods A serum-protein-based prognostic liver secretome signature (PLSec) was bioinformatically derived from previously validated hepatic transcriptome signatures and optimized in 79 patients with advanced liver fibrosis. We independently validated PLSec for HCC risk in 331 cirrhosis patients with mixed etiologies (validation set 1 [V1], median follow-up 4.5 years) and thereafter developed a composite risk score including clinical prognostic variables. The score was then validated in two independent cohorts: validation set 2 (V2): 164 patients with advanced liver fibrosis due to hepatitis C virus (HCV) infection cured after direct-acting antiviral therapy (nested case-control series, median follow-up 4.5 years); validation set 3 (V3): 146 patients with advanced liver fibrosis with successfully-treated HCC and cured HCV infection (median follow-up 2.9 years). Findings An 8-protein blood-based PLSec recapitulated transcriptome-based hepatic HCC risk status. In V1, PLSec was significantly associated with incident HCC risk (adjusted hazard ratio [aHR], 2.35; 95% confidence interval [CI], 1.30-4.23). A composite score with serum alpha-fetoprotein (PLSec-AFP) was defined in V1, and validated in V2 (adjusted odds ratio, 3.80 [95%CI, 1.66-8.66]) and V3 (aHR, 3.08 [95%CI, 1.78-5.31]; c-index, 0.74). PLSec-AFP outperformed AFP alone (Brier score, 0.165 vs. 0.186 in V2; 0.196 vs. 0.206 in V3, respectively). Conclusions The blood-based PLSec-AFP can accurately stratify patients with advanced liver fibrosis for long-term HCC risk and thereby guide risk-based tailored HCC screening.
DOI: 10.17632/3jdywv5jrv.1
title: SARS-CoV-2 infection-induced human B cells

description: This study was designed to capture the single cell transcriptome and BCR sequence of B cells that were bait sorted using oligo-tagged viral antigens. Human B cells (viable/CD19+/antigen-PE+ or viable/CD19+/antigen-APC+) were bait sorted after initial magnetic enrichment and used in downstream sequencing. PROTOCOLS: PBMCs were isolated from whole blood (acute samples) or leukoreduction filters (convalescent samples) by use of a Lymphoprep Ficoll gradient and any contaminating red blood cells were lysed by ACK buffer. Cells were then frozen at -80 deg C in fetal bovine serum supplemented with 10% DMSO. On the day of sorting and sequencing cells were thawed and B cell were purified by human pan B cell EasySep enrichment kit from STEMCELL technologies. Cells were partitioned into nanoliter-scale Gel Bead-In-EMulsions (GEMs) to achieve single cell resolution for a maximum of 10,000 individual cells per sample. Utilizing the Chromium Single Cell A Chip Kit(10x Genomics, PN-120236) and Chromium Single Cell 5' Library & Gel Bead Kit (10x Genomics, PN-1000006) , poly-adenylated mRNA from an individual cell was tagged with a unique 16 base pair 10x barcode and 10 base pair Unique Molecular Identifier. Libraries were generated using the Chromium Single Cell 5' Feature Barcode Library Kit (10x genomics, 1000080) and the Chromium Single Cell V(D)J Enrichment Kit Human B Cell (10x Genomics, PN-1000016). The cDNA amplicon size for each library was optimized using enzymatic fragmentation and size selection and the concentration and average fragment size of each library was determined using an Agilent High Sensitivity DNA Kit (Agilent). Specifically, user guide CG000186 Rev D was used for all steps. All libraries were sequenced on an Illuina NextSeq550 or an Illumina NextSeq500 with 26 cycles apportioned for read 1, 8 cycles for the i7 index, and 134 cycles for read 2 using an NextSeq 500/550 High Output Kit v2.5 (150 Cycles). Some samples were sequenced using a NextSeq 550 housed within the Pritzker School of Molecular Engineering's Chicago Immunoengineering Innovation Center (Chicago, IL) and others on a NextSeq500 belonging to the University of Chicago Genomics Facility (Chicago, IL - RRID: SCR_019196) DATA PROCESSING PIPELINE: Demultiplexing the Illumina sequencer's base call files (BCLs) for each flowcell directory into FASTQ files was performed by "cellranger mkfastq" (cellranger version 3.02) Gene counts were calculated using "cellranger count" (cellranger version 3.02) under default setting， BCR sequences were assembled using "cellranger vdj" (cellranger version 3.02) under default setting. GRCh38-1.2.0 for transccriptome, cellranger-vdj-GRCh38-alts-ensembl-2.0.0 for V(D)J
DOI: 10.17632/2yvx7f9yfm.1
title: In-Cylinder Pressure, Knock Sensor Signal and Diesel Injection Timing Signal for Diesel-CNG Dual Fuel Engine with various Fuel Ratios at 0.7 Equivalence Ratio

description: The data was collected using a 2.5-litre direct injection turbocharged 4-inline diesel engine and was converted to a diesel-CNG dual fuel system. A set of diesel to CNG fuel ratio at a constant 0.7 equivalence ratio was tested from 1400 rpm to 3000 rpm engine speed with 200 rpm interval. The tested fuels were 100D, 90D10G, 80D20G, and 70D30G which corresponding to 100:0, 90:10, 80:20, and 70:30 diesel to CNG fuel mass ratio. The data contains instantaneous in-cylinder pressure, diesel injection timing, air mass flow, and engine block vibration signals in 500 consecutive engine cycles. Engine performance, exhaust emissions, air-fuel mass flow rate ratio, and engine specification data were also included in this repository.
DOI: 10.6084/m9.figshare.14079635
title: Defining Comparative Physiology: Results from an Online Survey and Systematic Review - Supplemental Data, Tables, and Text

description: To define Comparative Physiology, professional physiology societies (n=54) were invited to share the online survey with their members and a systematic review of published reviews, editorials, books/book chapters, and letters was conducted using the term “comparative physiology”, which yielded 197 and 70 definitions, respectively.
DOI: 10.6084/m9.figshare.14079635.v1
title: Defining Comparative Physiology: Results from an Online Survey and Systematic Review - Supplemental Data, Tables, and Text

description: To define Comparative Physiology, professional physiology societies (n=54) were invited to share the online survey with their members and a systematic review of published reviews, editorials, books/book chapters, and letters was conducted using the term “comparative physiology”, which yielded 197 and 70 definitions, respectively.
DOI: 10.6084/m9.figshare.3761562.v1844
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.4706033
title: calibrated parameter vectors for the abridged extrinsic apoptosis reaction model (aEARM)

description: aEARM was calibrated to time course experimental data. The Differential Evolution Adaptive Metropolis MCMC sampling algorithm (DREAM<sub>(ZS)</sub>) was used to calibrate the model. The data provides the sampled parameter vectors saved as Numpy files (npy) and log posterior values of the sampled parameter vectors also saved as npy files.
DOI: 10.5281/zenodo.4706032
title: calibrated parameter vectors for the abridged extrinsic apoptosis reaction model (aEARM)

description: aEARM was calibrated to time course experimental data. The Differential Evolution Adaptive Metropolis MCMC sampling algorithm (DREAM<sub>(ZS)</sub>) was used to calibrate the model. The data provides the sampled parameter vectors saved as Numpy files (npy) and log posterior values of the sampled parameter vectors also saved as npy files.
DOI: 10.5281/zenodo.4705982
title: Input data for OpenDiHu simulations

description: This dataset contains input files accompanying the OpenDiHu software version 1.3. In particular, it contains the following type of files: CellML models Mesh files - only meshes with up to 109x109 fibers are included Cortical input for Motor Neuron models Motor unit association to fibers Firing times for motor units Place these files in the directory $OPENDIHU_HOME/examples/electrophysiology/input The OpenDiHu repository can be found at https://github.com/maierbn/opendihu/
DOI: 10.5281/zenodo.4705944
title: Input data for OpenDiHu simulations

description: This dataset contains input files accompanying the OpenDiHu software version 1.3. In particular, it contains the following type of files: CellML models Mesh files - only meshes with up to 109x109 fibers are included Cortical input for Motor Neuron models Motor unit association to fibers Firing times for motor units Place these files in the directory $OPENDIHU_HOME/examples/electrophysiology/input The OpenDiHu repository can be found at https://github.com/maierbn/opendihu/
DOI: 10.25345/c54f88
title: MassIVE MSV000087248 - Quantitative proteomics and phosphoproteomics reveal TNF-alpha mediated downstream protein functions in hepatocytes
title: The increased secretion of pro-inflammatory cytokines, such as tumor necrosis factor-alpha, is often associated with adipose tissue dysregulation, which often accompanies obesity. High levels of TNF-alpha have been linked to development of insulin resistance in several tissues and organs, including skeletal muscle and the liver. In this study, we examined the complex regulatory roles of TNF-alpha in murine hepatocytes utilizing a combination of global proteomics and phosphoproteomics analyses. Our results show that TNF-alpha promotes extensive, dynamic changes not only of protein levels, but also the dynamics of their downstream phosphorylation signaling states. We provide evidence that TNF-alpha likely induces DNA replication, and promotes G1/S transition through the activation of the MAPK pathway. Our data also highlights several other novel proteins, many of which are regulated by phosphorylation and that play a role in the progression and development of insulin resistance in hepatocytes.
DOI: 10.18112/openneuro.ds002837.v1.1.3
title: Naturalistic Neuroimaging Database
DOI: 10.6084/m9.figshare.14384832.v1
title: axivity-ax6-left-forearm-nondominant

description: 6-axis actigraphy (translation and rotation) using Axivity AX6 (similar to AX3 used in UK BioBank), configured with 100Hz sampling frequency, 16bit resolution and 2000dps gyro/rotation.<br>Attached with a velcro to the exterior of a cotton wrist band with arrow facing down/back, on the left forearm (non-dominant arm).
DOI: 10.6084/m9.figshare.14384819.v1
title: ibutton-left-nondominant-upper-arm-cotton-sports-wristband-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the radial artery on the forearm (between elbow and wrist, about in the middle with a slightly changing position regularly to avoid skin damage due to continuous skin obstruction and warmth) by being attached with a velcro to a cotton sports wrist band. See the works of Dr. Antonio Martinez Nicolas for more details on wrist skin temperature rhythm and WTIO.<br>The procedure is described in: https://pubmed.ncbi.nlm.nih.gov/18761026/<br>This dataset can be used alone or in combination with ibutton-left-nondominant-upper-arm-cotton-sports-wristband-dorsal-interior-5min and ibutton-left-nondominant-upper-arm-cotton-sports-wristband-ventral-exterior-5min to regress dorsal skin temperature and ambient temperature respectively.<br>The files contain the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384817
title: ibutton-elbow-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the radial artery in the elbow attached with a Hypafix medical adhesive. Did not stick well during sleep periods hence the experiment was discontinued after some time.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384817.v1
title: ibutton-elbow-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the radial artery in the elbow attached with a Hypafix medical adhesive. Did not stick well during sleep periods hence the experiment was discontinued after some time.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384816
title: ibutton-infraclavicular-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed infraclavicular with a Hypafix medical adhesive.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384816.v1
title: ibutton-infraclavicular-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed infraclavicular with a Hypafix medical adhesive.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384813
title: ibutton-chest-belt-axillary-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the axillary (below the armpit) attached on a Polar Pro chest strap.<br>This wearable was only worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384813.v1
title: ibutton-chest-belt-axillary-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the axillary (below the armpit) attached on a Polar Pro chest strap.<br>This wearable was only worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384810
title: ibutton-axillary-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the axillary (below the armpit) attached with a Hypafix medical tape.<br>This data was acquired simultaneously and at the exact same body location as the ibutton-axillary-2min dataset.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384810.v1
title: ibutton-axillary-5min

description: Skin temperature using a Maxim Thermocron iButton DS1925L set at a resolution of one sample every 5 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed on the axillary (below the armpit) attached with a Hypafix medical tape.<br>This data was acquired simultaneously and at the exact same body location as the ibutton-axillary-2min dataset.<br>This wearable was mostly worn when at home.<br><br>Each file contains the whole history up to the timestamp in the filename. Hence, to study the longest period, use only the latest file, do not concatenate with previous ones.<br>
DOI: 10.6084/m9.figshare.14384798
title: ibutton-axillary-2min

description: Skin temperature using a Maxim Thermocron iButton DS1922L set at a resolution of one sample every 2 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed in axillary (under armpit) attached with a Hypafix medical adhesive.<br><br>This dataset was acquired simultaneously and at the exact same body location as the ibutton-axillary-5min dataset.<br>This wearable was mostly worn when at home.<br><br>Due to the internal memory limitations of this iButton model, each file represent one session of up to 10 days of data acquisition. Sometimes, some files include the data of previous files. This is an early experiment and so the data acquisition procedure was not very systematic.
DOI: 10.6084/m9.figshare.14384798.v1
title: ibutton-axillary-2min

description: Skin temperature using a Maxim Thermocron iButton DS1922L set at a resolution of one sample every 2 min (max resolution) and temperature resolution of 0.0625°C (max resolution), placed in axillary (under armpit) attached with a Hypafix medical adhesive.<br><br>This dataset was acquired simultaneously and at the exact same body location as the ibutton-axillary-5min dataset.<br>This wearable was mostly worn when at home.<br><br>Due to the internal memory limitations of this iButton model, each file represent one session of up to 10 days of data acquisition. Sometimes, some files include the data of previous files. This is an early experiment and so the data acquisition procedure was not very systematic.