cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3560265
title: Appendix B. Model description.

description: Model description.
DOI: 10.6084/m9.figshare.3560265.v1
title: Appendix B. Model description.

description: Model description.
DOI: 10.6084/m9.figshare.3560262
title: Appendix C. Model parameterization.

description: Model parameterization.
DOI: 10.6084/m9.figshare.3560262.v1
title: Appendix C. Model parameterization.

description: Model parameterization.
DOI: 10.6084/m9.figshare.3560259
title: Appendix D. List of parameters (“constants”) in the model.

description: List of parameters (“constants”) in the model.
DOI: 10.6084/m9.figshare.3560259.v1
title: Appendix D. List of parameters (“constants”) in the model.

description: List of parameters (“constants”) in the model.
DOI: 10.6084/m9.figshare.3560256
title: Appendix E. The variables that are calculated by the model.

description: The variables that are calculated by the model.
DOI: 10.6084/m9.figshare.3560253
title: Appendix F. List of functional traits.

description: List of functional traits.
DOI: 10.6084/m9.figshare.3560250
title: Appendix G. Species traits, performances, and distributions.

description: Species traits, performances, and distributions.
DOI: 10.6084/m9.figshare.3560250.v1
title: Appendix G. Species traits, performances, and distributions.

description: Species traits, performances, and distributions.
DOI: 10.6084/m9.figshare.3560247
title: Appendix H. The predicted net carbon gain along gradients of light and water availability.

description: The predicted net carbon gain along gradients of light and water availability.
DOI: 10.6084/m9.figshare.3560247.v1
title: Appendix H. The predicted net carbon gain along gradients of light and water availability.

description: The predicted net carbon gain along gradients of light and water availability.
DOI: 10.6084/m9.figshare.3560244
title: Appendix A. Supporting tables and figures for basic plot and species descriptors.

description: Supporting tables and figures for basic plot and species descriptors.
DOI: 10.6084/m9.figshare.3560241
title: Appendix B. Supporting methods and equations used in survival and spatial models.

description: Supporting methods and equations used in survival and spatial models.
DOI: 10.6084/m9.figshare.3560241.v1
title: Appendix B. Supporting methods and equations used in survival and spatial models.

description: Supporting methods and equations used in survival and spatial models.
DOI: 10.6084/m9.figshare.3560238
title: Appendix A. Experimental design of the Sardinilla plantation.

description: Experimental design of the Sardinilla plantation.
DOI: 10.6084/m9.figshare.3560238.v1
title: Appendix A. Experimental design of the Sardinilla plantation.

description: Experimental design of the Sardinilla plantation.
DOI: 10.6084/m9.figshare.3560235
title: Appendix B. Supplementary methods for the analysis of hemispherical photographs.

description: Supplementary methods for the analysis of hemispherical photographs.
DOI: 10.6084/m9.figshare.3560235.v1
title: Appendix B. Supplementary methods for the analysis of hemispherical photographs.

description: Supplementary methods for the analysis of hemispherical photographs.
DOI: 10.6084/m9.figshare.3560232
title: Appendix C. Light interception model.

description: Light interception model.
DOI: 10.6084/m9.figshare.3560232.v1
title: Appendix C. Light interception model.

description: Light interception model.
DOI: 10.6084/m9.figshare.3560229
title: Appendix D. Supplementary methods and results for the stratified bootstrap tests.

description: Supplementary methods and results for the stratified bootstrap tests.
DOI: 10.6084/m9.figshare.3560229.v1
title: Appendix D. Supplementary methods and results for the stratified bootstrap tests.

description: Supplementary methods and results for the stratified bootstrap tests.
DOI: 10.6084/m9.figshare.3560226
title: Appendix E. Supplementary methods and results for the virtual biodiversity experiments.

description: Supplementary methods and results for the virtual biodiversity experiments.
DOI: 10.6084/m9.figshare.3560226.v1
title: Appendix E. Supplementary methods and results for the virtual biodiversity experiments.

description: Supplementary methods and results for the virtual biodiversity experiments.
DOI: 10.6084/m9.figshare.3560223
title: Appendix F. Mixtures effects thanks to differences in light extinction abilities.

description: Mixtures effects thanks to differences in light extinction abilities.
DOI: 10.6084/m9.figshare.3560223.v1
title: Appendix F. Mixtures effects thanks to differences in light extinction abilities.

description: Mixtures effects thanks to differences in light extinction abilities.
DOI: 10.6084/m9.figshare.3560220
title: Appendix A. Map of the study area and description of the 30 remnant Banksia woodlands sampled in the Perth Metropolitan Area, Australia.

description: Map of the study area and description of the 30 remnant Banksia woodlands sampled in the Perth Metropolitan Area, Australia.
DOI: 10.6084/m9.figshare.3560217
title: Appendix B. GIS data collected for the study.

description: GIS data collected for the study.
DOI: 10.6084/m9.figshare.3560217.v1
title: Appendix B. GIS data collected for the study.

description: GIS data collected for the study.
DOI: 10.6084/m9.figshare.3560214
title: Appendix C. Configuration of the sampling plot.

description: Configuration of the sampling plot.
DOI: 10.6084/m9.figshare.3560214.v1
title: Appendix C. Configuration of the sampling plot.

description: Configuration of the sampling plot.
DOI: 10.6084/m9.figshare.3560211
title: Appendix D. Description of the semi-qualitative disturbance assessment used to quantify intensity of human activities and grazing in the study remnants.

description: Description of the semi-qualitative disturbance assessment used to quantify intensity of human activities and grazing in the study remnants.
DOI: 10.6084/m9.figshare.3560211.v1
title: Appendix D. Description of the semi-qualitative disturbance assessment used to quantify intensity of human activities and grazing in the study remnants.

description: Description of the semi-qualitative disturbance assessment used to quantify intensity of human activities and grazing in the study remnants.
DOI: 10.6084/m9.figshare.3560208
title: Appendix E. Description of the landscape and local factors used in the study.

description: Description of the landscape and local factors used in the study.
DOI: 10.6084/m9.figshare.3560208.v1
title: Appendix E. Description of the landscape and local factors used in the study.

description: Description of the landscape and local factors used in the study.
DOI: 10.6084/m9.figshare.3560205
title: Appendix A. The average biomass per treatment of each individual species harvested from the experiment, along with information about their height and clonality and whether each species was added.

description: The average biomass per treatment of each individual species harvested from the experiment, along with information about their height and clonality and whether each species was added.
DOI: 10.6084/m9.figshare.3560205.v1
title: Appendix A. The average biomass per treatment of each individual species harvested from the experiment, along with information about their height and clonality and whether each species was added.

description: The average biomass per treatment of each individual species harvested from the experiment, along with information about their height and clonality and whether each species was added.
DOI: 10.6084/m9.figshare.3560202
title: Appendix B. Scatterplot showing the correlation between 2010 and 2013 light levels.

description: Scatterplot showing the correlation between 2010 and 2013 light levels.
DOI: 10.6084/m9.figshare.3560202.v1
title: Appendix B. Scatterplot showing the correlation between 2010 and 2013 light levels.

description: Scatterplot showing the correlation between 2010 and 2013 light levels.
DOI: 10.6084/m9.figshare.3560199
title: Appendix A. Additional results for the Truelove Lowland spatially explicit structural equation model (SE-SEM), and example applications of SE-SEM to two additional data sets.

description: Additional results for the Truelove Lowland spatially explicit structural equation model (SE-SEM), and example applications of SE-SEM to two additional data sets.
DOI: 10.6084/m9.figshare.3560199.v1
title: Appendix A. Additional results for the Truelove Lowland spatially explicit structural equation model (SE-SEM), and example applications of SE-SEM to two additional data sets.

description: Additional results for the Truelove Lowland spatially explicit structural equation model (SE-SEM), and example applications of SE-SEM to two additional data sets.
DOI: 10.6084/m9.figshare.3560196
title: Supplement 1. R functions to perform SE-SEM and R scripts and data for the examples used in this paper.

description: File List Lamb_et_al_2014_Example_Scripts.r (MD5: 442bf05e56ad6aa9e25abcb7efd0e267) rawdata_Alexfiord.csv (MD5: e1b934551bf56bd930a5e6ed88ec475a) rawdata_plantcomp.csv (MD5: 350edef7f8b8ddee19d7092585545074) rawdata_truelove.csv (MD5: 5b4b71effc28860d97c437289c4f0830) sesem1.0.0.r (MD5: bd91498321cd699f71ab842969ddb6a3) Description Lamb et al. 2014. Example Scripts.r – Contains R code to execute examples. rawdata_Alexfiord.csv – Datafile for the Alexandra Fiord examples. rawdata_plantcomp.csv – Datafile for the Plant Competition examples. rawdata_truelove.csv – Datafile for the Truelove lowland examples. sesem1.0.0.r – Contains R code for spatial structural equation modeling functions.
DOI: 10.6084/m9.figshare.3560193
title: Appendix A. Summary of logistic regression selection analyses.

description: Summary of logistic regression selection analyses.
DOI: 10.6084/m9.figshare.3560190
title: Appendix B. Schematic of stream mesocosms and experimental layout.

description: Schematic of stream mesocosms and experimental layout.
DOI: 10.6084/m9.figshare.3560190.v1
title: Appendix B. Schematic of stream mesocosms and experimental layout.

description: Schematic of stream mesocosms and experimental layout.
DOI: 10.6084/m9.figshare.3560187
title: Appendix C. Schematic of experimental feeding regimes for stream mesocosms.

description: Schematic of experimental feeding regimes for stream mesocosms.
DOI: 10.6084/m9.figshare.3560187.v1
title: Appendix C. Schematic of experimental feeding regimes for stream mesocosms.

description: Schematic of experimental feeding regimes for stream mesocosms.
DOI: 10.6084/m9.figshare.3560184
title: Appendix A. A size-structured predator–prey model with two ontogenetic niche shifts in the predator: details of model variables, parameters, and functions.

description: A size-structured predator–prey model with two ontogenetic niche shifts in the predator: details of model variables, parameters, and functions.
DOI: 10.6084/m9.figshare.3560184.v1
title: Appendix A. A size-structured predator–prey model with two ontogenetic niche shifts in the predator: details of model variables, parameters, and functions.

description: A size-structured predator–prey model with two ontogenetic niche shifts in the predator: details of model variables, parameters, and functions.
DOI: 10.6084/m9.figshare.3560181
title: Appendix B. Additional robustness analyses and results.

description: Additional robustness analyses and results.
DOI: 10.6084/m9.figshare.3560181.v1
title: Appendix B. Additional robustness analyses and results.

description: Additional robustness analyses and results.
DOI: 10.6084/m9.figshare.3560178
title: Appendix A. Figures showing Hawaii map, example LA-ICP-MS transects, and results of the Delta K information criterion.

description: Figures showing Hawaii map, example LA-ICP-MS transects, and results of the Delta K information criterion.
DOI: 10.6084/m9.figshare.3560178.v1
title: Appendix A. Figures showing Hawaii map, example LA-ICP-MS transects, and results of the Delta K information criterion.

description: Figures showing Hawaii map, example LA-ICP-MS transects, and results of the Delta K information criterion.
DOI: 10.6084/m9.figshare.3560175
title: Appendix B. Data collection summary statistics, LA-ICP-MS quality control data, and univariate statistics for element:calcium ratios from otolith samples.

description: Data collection summary statistics, LA-ICP-MS quality control data, and univariate statistics for element:calcium ratios from otolith samples.
DOI: 10.6084/m9.figshare.3560175.v1
title: Appendix B. Data collection summary statistics, LA-ICP-MS quality control data, and univariate statistics for element:calcium ratios from otolith samples.

description: Data collection summary statistics, LA-ICP-MS quality control data, and univariate statistics for element:calcium ratios from otolith samples.
DOI: 10.6084/m9.figshare.3560172
title: Appendix C. Detailed methodology: otolith preparation, microchemical analysis, and Bayesian analysis.

description: Detailed methodology: otolith preparation, microchemical analysis, and Bayesian analysis.
DOI: 10.6084/m9.figshare.3560169
title: Appendix A. Five years of temperature, precipitation, and wind data from the study area.

description: Five years of temperature, precipitation, and wind data from the study area.
DOI: 10.6084/m9.figshare.3560169.v1
title: Appendix A. Five years of temperature, precipitation, and wind data from the study area.

description: Five years of temperature, precipitation, and wind data from the study area.
DOI: 10.6084/m9.figshare.3560166
title: Appendix B. Illustrations of movement machine and wind blocks.

description: Illustrations of movement machine and wind blocks.
DOI: 10.6084/m9.figshare.3560166.v1
title: Appendix B. Illustrations of movement machine and wind blocks.

description: Illustrations of movement machine and wind blocks.
DOI: 10.6084/m9.figshare.3560163
title: Appendix C. Figures showing no direct effect of wind on aphid abundance.

description: Figures showing no direct effect of wind on aphid abundance.
DOI: 10.6084/m9.figshare.3560163.v1
title: Appendix C. Figures showing no direct effect of wind on aphid abundance.

description: Figures showing no direct effect of wind on aphid abundance.
DOI: 10.6084/m9.figshare.3560160
title: Appendix A. Fertilization and climatic effects on species population stability.

description: Fertilization and climatic effects on species population stability.
DOI: 10.6084/m9.figshare.3560157
title: Data Paper. Data Paper

description: File List SITE INFO.csv (MD5: 6d51faf1d75d50f75ec704e57e262ebf) SEED MIX.csv (MD5: 61469ab36c44d41ff6aee18fa1754089) PLANT COMMUNITY.csv (MD5: a89e01dfe15b84e3f3b6e980ca80a8a7) PLOT LEVEL.csv (MD5: c6bf2615e9e44a42980a21918a2fd024) Description By assisting the recovery of disturbed or destroyed ecosystems, ecological restoration plays an important role in biodiversity conservation. Moreover, restoration has been heralded as an “acid test” of ecological understanding, by affording the ability to study community assembly, ecosystem function, and human influence over ecosystems across large spatial and long temporal scales. These data sets report the outcome of community assembly, in terms of plant community composition and structure and one important ecosystem function (aboveground biomass production), in 29 prairie restorations in southwestern Michigan. We also report putative forces shaping the outcome of assembly including the species pools (seed mixes applied during restoration), site conditions, landscape context, and land-use history. Detailed knowledge of each restoration effort, including seed mixes used, is unusual and makes these data sets uniquely suited to addressing questions in community assembly by comparing the sown seeds and resulting assembled plant community. For example, we have used the data to test the role of species pools in determining the diversity of assembling communities. We have also used the data to characterize the relative importance of various drivers of community assembly outcomes during restoration, as a step toward resolving the highly contingent and unpredictable outcomes that plague the field of ecological restoration. We suggest that these data sets may prove useful for addressing additional questions in community ecology through the lens of ecological restoration. <i>Key words</i>: <i>aboveground biomass; community assembly; ecosystem function; prairie restoration; seed mix; species pool.</i>
DOI: 10.6084/m9.figshare.3560154
title: Data Paper. Data Paper

description: File List CSIRO_permanent_plots.zip (MD5: 05f273b3cf0c52a747bd64f383f8f3a4) CSIRO_Permanent_Rainforest_Plots_of_North_Queensland.html Description We present repeated stem measurement data from 20 0.5-ha (100 × 50 m) permanent rain forest plots in northern Queensland, Australia from 1971 to 2013. The plots have a rainfall range of 1200 to 3500 mm, represent 11 vegetation types, six parent materials, and range from 15 to 1200 m above sea level. Except for minor disturbances associated with selective logging on two plots, the plots were established in old growth forest and all plots have thereafter been protected. Plots were regularly censused and at each census the diameter at breast height (DBH) of all stems ≥10 cm DBH were recorded. Data is presented for 10998 individual stems with plot stem densities at establishment ranging from 476 to 1104 stems/ha. Due to the wide geographical range of the plots, no species dominate, although the families Lauraceae, Rutaceae, and Myrtaceae contribute a large number of species. Basal area values at establishment ranged from 28.6 to 63.3 m²/ha and showed no trend of increasing or decreasing over time due mainly to regular disturbance and recovery from natural events such as cyclones. In addition to stems ≥10 cm DBH data, we present height data, floristic data from understory stems (≥50 cm height to &lt;10 cm DBH), an auxiliary species list (including vines, epiphytes, ferns, grasses, herbs, and other life forms), and a list of voucher specimens lodged in herbaria. The data collected from the 20 plots provides an insight into the floristics, structure, and long-term forest dynamics of Australian tropical rain forests and allows direct comparisons to be made with long-term monitoring plots at a global scale. <i>Key words: Australia; biomass; cyclone; disturbance; hurricane; mortality; permanent plot; rain forest; recruitment; stem growth; stem height. </i>
DOI: 10.6084/m9.figshare.3560151
title: Appendix A. Supplemental testing, sensitivity, and results for the Panulirus argus-PaV1 model.

description: Supplemental testing, sensitivity, and results for the Panulirus argus-PaV1 model.
DOI: 10.6084/m9.figshare.3560151.v1
title: Appendix A. Supplemental testing, sensitivity, and results for the Panulirus argus-PaV1 model.

description: Supplemental testing, sensitivity, and results for the Panulirus argus-PaV1 model.
DOI: 10.6084/m9.figshare.3560148
title: Supplement 1. C++ code for the Panulirus argus-PaV1 spatially explicit, individual-based model.

description: File List Supplement_Model_Source_Code.txt (MD5: 4ee8fd3f75fef441a16d2db546f1c767) Description The file, Supplement_Model_Source_Code.txt, contains a complete source listing of C++ data and control structures for the <i>Panulirus argus</i>-PaV1 model. The model was programmed in Microsoft Visual Studio 2008. The various modules in the source listing may be copied into any development environment to be compiled, but GUI elements could not be included, and no effort has been made to ensure portability.
DOI: 10.6084/m9.figshare.3560148.v1
title: Supplement 1. C++ code for the Panulirus argus-PaV1 spatially explicit, individual-based model.

description: File List Supplement_Model_Source_Code.txt (MD5: 4ee8fd3f75fef441a16d2db546f1c767) Description The file, Supplement_Model_Source_Code.txt, contains a complete source listing of C++ data and control structures for the <i>Panulirus argus</i>-PaV1 model. The model was programmed in Microsoft Visual Studio 2008. The various modules in the source listing may be copied into any development environment to be compiled, but GUI elements could not be included, and no effort has been made to ensure portability.
DOI: 10.6084/m9.figshare.3560145
title: Appendix A. Detailed methods and supplementary results.

description: Detailed methods and supplementary results.
DOI: 10.6084/m9.figshare.3560142
title: Supplement 1. Focal species pairs and results of interspecific aggressive interactions.

description: File List Focal_Species.csv (MD5: 3daf01dc626167dee4ebae7df5e97921) Description This file contains the results of aggressive interactions among the 65 species pairs used to distinguish dominant and subordinate species in our study, as well as relevant mass data, phylogenetic data, and references. Columns are as follows: Comparison: Independent comparison number, sequentially numbered, following the taxonomic order of Gill and Donsker (2010). Order: Taxonomic order of focal species, following Gill and Donsker (2010). Family: Taxonomic family of focal species, following Gill and Donsker (2010). Genus: Taxonomic genus of focal species, following Gill and Donsker (2010). Dominant Sp: Species that won the majority of aggressive contests with its paired congener. Subordinate Sp: Species that lost the majority of aggressive contests with its paired congener. Win.dom: Number of aggressive contests between paired congeners won by the dominant species. Win.sub: Number of aggressive contests between paired congeners won by the subordinate species. Sum.win: Total number of aggressive contests between the paired congeners. Binom.test: P value from a binomial test on the number of aggressive contests won by the dominant congener relative to the total number of aggressive contests between paired congeners. Dominant Mass: Mean mass of the dominant species. Subordinate Mass: Mean mass of the subordinate species. N.mass.dom: Number of individuals used to calculate mean mass for the dominant species. N.mass.sub: Number of individuals used to calculate mean mass for the subordinate species. Interaction Data Reference: Source of data on the outcomes of aggressive contests between paired congeners. Phylogenetic relationship reference: Source of data on the phylogenetic relationships among congeners.
DOI: 10.6084/m9.figshare.3560142.v1
title: Supplement 1. Focal species pairs and results of interspecific aggressive interactions.

description: File List Focal_Species.csv (MD5: 3daf01dc626167dee4ebae7df5e97921) Description This file contains the results of aggressive interactions among the 65 species pairs used to distinguish dominant and subordinate species in our study, as well as relevant mass data, phylogenetic data, and references. Columns are as follows: Comparison: Independent comparison number, sequentially numbered, following the taxonomic order of Gill and Donsker (2010). Order: Taxonomic order of focal species, following Gill and Donsker (2010). Family: Taxonomic family of focal species, following Gill and Donsker (2010). Genus: Taxonomic genus of focal species, following Gill and Donsker (2010). Dominant Sp: Species that won the majority of aggressive contests with its paired congener. Subordinate Sp: Species that lost the majority of aggressive contests with its paired congener. Win.dom: Number of aggressive contests between paired congeners won by the dominant species. Win.sub: Number of aggressive contests between paired congeners won by the subordinate species. Sum.win: Total number of aggressive contests between the paired congeners. Binom.test: P value from a binomial test on the number of aggressive contests won by the dominant congener relative to the total number of aggressive contests between paired congeners. Dominant Mass: Mean mass of the dominant species. Subordinate Mass: Mean mass of the subordinate species. N.mass.dom: Number of individuals used to calculate mean mass for the dominant species. N.mass.sub: Number of individuals used to calculate mean mass for the subordinate species. Interaction Data Reference: Source of data on the outcomes of aggressive contests between paired congeners. Phylogenetic relationship reference: Source of data on the phylogenetic relationships among congeners.