cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22654163.v1
title: Cohesion and Repulsion in Bayesian Distance Clustering

description: Clustering in high-dimensions poses many statistical challenges. While traditional distance-based clustering methods are computationally feasible, they lack probabilistic interpretation and rely on heuristics for estimation of the number of clusters. On the other hand, probabilistic model-based clustering techniques often fail to scale and devising algorithms that are able to effectively explore the posterior space is an open problem. Based on recent developments in Bayesian distance-based clustering, we propose a hybrid solution that entails defining a likelihood on pairwise distances between observations. The novelty of the approach consists in including both cohesion and repulsion terms in the likelihood, which allows for cluster identifiability. This implies that clusters are composed of objects which have small <i>dissimilarities</i> among themselves (cohesion) and similar dissimilarities to observations in other clusters (repulsion). We show how this modeling strategy has interesting connection with existing proposals in the literature. The proposed method is computationally efficient and applicable to a wide variety of scenarios. We demonstrate the approach in simulation and an application in digital numismatics. Supplementary Material with code is available online.
DOI: 10.34740/kaggle/dsv/5449420
title: Balochi Language to English Translation Dataset
DOI: 10.5281/zenodo.7831940
title: NATIONAL CYBER VULNERABILITIES DATASET

description: <pre>This dataset contains relevant information on the set of cyber vulnerabilities cataloged so far that can affect different applications or software. This contains information about: their names, affected products, inclusion date, severity, score, affectations, among others. It is of vital importance in the world of cybersecurity. </pre>
DOI: 10.5281/zenodo.7831939
title: NATIONAL CYBER VULNERABILITIES DATASET

description: <pre>This dataset contains relevant information on the set of cyber vulnerabilities cataloged so far that can affect different applications or software. This contains information about: their names, affected products, inclusion date, severity, score, affectations, among others. It is of vital importance in the world of cybersecurity. </pre>
DOI: 10.5281/zenodo.6350332
title: Experimental data for "An open-access database for the assessment of particle damper simulation tools"

description: Experimental data for "An open access database for the assessment of particle damper simulation tools"
DOI: 10.5281/zenodo.6350333
title: Experimental data for "An open-access database for the assessment of particle damper simulation tools"

description: Experimental data for "An open access database for the assessment of particle damper simulation tools"
DOI: 10.5281/zenodo.7843683
title: Experimental data for "An open-access database for the assessment of particle damper simulation tools"

description: Experimental data for "An open access database for the assessment of particle damper simulation tools"
DOI: 10.5281/zenodo.7843725
title: Current meter measurements in the East River. NY

description: This data file contains observations from a 600 kHz RD Instruments ADCP (SN 1094) deployed at 40° 48.0015 N, 73° 50.4960' W, in approximately 18.25 m of water from 14th Oct, 2020 to 17th March, 2021. Data was averaged in 15-minute intervals and 0.5 m vertical bins. The raw horizontal velocity component data was converted to true East and North and samples at levels corrupted by sidleobe echos and transducer ring-down were replaced error flags. QAQC procedures were applied following <em>(https://cdn.ioos.noaa.gov/media/2017/12/qc_analysis_acoustic_doppler_current_profiler_data.pdf). Data are stored in NETCDF format. </em>
DOI: 10.5281/zenodo.7843724
title: Current meter measurements in the East River. NY

description: This data file contains observations from a 600 kHz RD Instruments ADCP (SN 1094) deployed at 40° 48.0015 N, 73° 50.4960' W, in approximately 18.25 m of water from 14th Oct, 2020 to 17th March, 2021. Data was averaged in 15-minute intervals and 0.5 m vertical bins. The raw horizontal velocity component data was converted to true East and North and samples at levels corrupted by sidleobe echos and transducer ring-down were replaced error flags. QAQC procedures were applied following <em>(https://cdn.ioos.noaa.gov/media/2017/12/qc_analysis_acoustic_doppler_current_profiler_data.pdf). Data are stored in NETCDF format. </em>
DOI: 10.6084/m9.figshare.22348567
title: Test of Significance for High-Dimensional Thresholds with Application to Individualized Minimal Clinically Important Difference

description: This work is motivated by learning the individualized minimal clinically important difference, a vital concept to assess clinical importance in various biomedical studies. We formulate the scientific question into a high-dimensional statistical problem where the parameter of interest lies in an individualized linear threshold. The goal is to develop a hypothesis testing procedure for the significance of a single element in this parameter as well as of a linear combination of this parameter. The difficulty dues to the high-dimensional nuisance in developing such a testing procedure, and also stems from the fact that this high-dimensional threshold model is nonregular and the limiting distribution of the corresponding estimator is nonstandard. To deal with these challenges, we construct a test statistic via a new bias-corrected smoothed decorrelated score approach, and establish its asymptotic distributions under both null and local alternative hypotheses. We propose a double-smoothing approach to select the optimal bandwidth in our test statistic and provide theoretical guarantees for the selected bandwidth. We conduct simulation studies to demonstrate how our proposed procedure can be applied in empirical studies. We apply the proposed method to a clinical trial where the scientific goal is to assess the clinical importance of a surgery procedure. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22348567.v2
title: Test of Significance for High-Dimensional Thresholds with Application to Individualized Minimal Clinically Important Difference

description: This work is motivated by learning the individualized minimal clinically important difference, a vital concept to assess clinical importance in various biomedical studies. We formulate the scientific question into a high-dimensional statistical problem where the parameter of interest lies in an individualized linear threshold. The goal is to develop a hypothesis testing procedure for the significance of a single element in this parameter as well as of a linear combination of this parameter. The difficulty dues to the high-dimensional nuisance in developing such a testing procedure, and also stems from the fact that this high-dimensional threshold model is nonregular and the limiting distribution of the corresponding estimator is nonstandard. To deal with these challenges, we construct a test statistic via a new bias-corrected smoothed decorrelated score approach, and establish its asymptotic distributions under both null and local alternative hypotheses. We propose a double-smoothing approach to select the optimal bandwidth in our test statistic and provide theoretical guarantees for the selected bandwidth. We conduct simulation studies to demonstrate how our proposed procedure can be applied in empirical studies. We apply the proposed method to a clinical trial where the scientific goal is to assess the clinical importance of a surgery procedure. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.22348567.v1
title: Test of Significance for High-dimensional Thresholds with Application to Individualized Minimal Clinically Important Difference

description: This work is motivated by learning the individualized minimal clinically important difference, a vital concept to assess clinical importance in various biomedical studies. We formulate the scientific question into a high-dimensional statistical problem where the parameter of interest lies in an individualized linear threshold. The goal is to develop a hypothesis testing procedure for the significance of a single element in this parameter as well as of a linear combination of this parameter. The difficulty dues to the high-dimensional nuisance in developing such a testing procedure, and also stems from the fact that this high-dimensional threshold model is nonregular and the limiting distribution of the corresponding estimator is nonstandard. To deal with these challenges, we construct a test statistic via a new bias-corrected smoothed decorrelated score approach, and establish its asymptotic distributions under both null and local alternative hypotheses. We propose a double-smoothing approach to select the optimal bandwidth in our test statistic and provide theoretical guarantees for the selected bandwidth. We conduct simulation studies to demonstrate how our proposed procedure can be applied in empirical studies. We apply the proposed method to a clinical trial where the scientific goal is to assess the clinical importance of a surgery procedure.
DOI: 10.6084/m9.figshare.22639273
title: Supporting and Raw Data - Quantifying Intracellular Nanoparticle Distributions with Three-Dimensional Super-Resolution Microscopy

description: The files represent the supporting and raw data for the ACS Nano publication "Quantifying Intracellular Nanoparticle Distributions with Three-Dimensional Super-Resolution Microscopy" (DOI: 10.1021/acsnano.2c12808).
DOI: 10.6084/m9.figshare.22639273.v1
title: Supporting and Raw Data - Quantifying Intracellular Nanoparticle Distributions with Three-Dimensional Super-Resolution Microscopy

description: The files represent the supporting and raw data for the ACS Nano publication "Quantifying Intracellular Nanoparticle Distributions with Three-Dimensional Super-Resolution Microscopy" (DOI: 10.1021/acsnano.2c12808).
DOI: 10.5281/zenodo.3699313
title: Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"

description: Supplementary phylogenetic data for Rouïl <em>et. al.</em> 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals" The data set consists of the following sub-directories: 1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format. 2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses. 3) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies. 4) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold. 5) "Hamiltonella_drafts": Newly-sequenced low-coverage draft <em>Hamiltonella</em> genomes in FASTA format. 5) "Hamiltonella_phylogeny": files used for <em>Hamiltonella</em> phylogenetic analysis. See enclosed README.txt file for more details.
description: Agence Nationale pour la Recherche (FR) [ANR-10-INBS-09]
DOI: 10.5281/zenodo.3764739
title: Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"

description: Supplementary phylogenetic data for Rouïl <em>et. al.</em> 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals" The data set consists of the following sub-directories: 1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format. 2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses. 3) "APSE_reannotations": GenBank-formatted files of the assemblies and re-annotations of APSE phages. Newly-sequenced phages deposited at the European nucleotide Archive are also included. ***New in this version*** 4) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies. 5) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold. 6) "Hamiltonella_drafts": Newly-sequenced low-coverage draft <em>Hamiltonella</em> genomes in FASTA format. 7) "Hamiltonella_phylogeny": files used for <em>Hamiltonella</em> phylogenetic analysis. See enclosed README.txt file for more details.
description: Agence Nationale pour la Recherche (FR) [ANR-10-INBS-09]
DOI: 10.5281/zenodo.3699312
title: Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"

description: Supplementary phylogenetic data for Rouïl <em>et. al.</em> 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals" The data set consists of the following sub-directories: 1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format. 2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses. 3) "APSE_reannotations": GenBank-formatted files of the assemblies and re-annotations of APSE phages. Newly-sequenced phages deposited at the European nucleotide Archive are also included. ***New in this version*** 4) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies. 5) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold. 6) "Hamiltonella_drafts": Newly-sequenced low-coverage draft <em>Hamiltonella</em> genomes in FASTA format. 7) "Hamiltonella_phylogeny": files used for <em>Hamiltonella</em> phylogenetic analysis. See enclosed README.txt file for more details. * ver. 1.1.1: Updated annotations for APSE genomes including inteins missing in previous annotation files.
description: Agence Nationale pour la Recherche (FR) [ANR-10-INBS-09]
DOI: 10.5281/zenodo.7843755
title: Supplementary phylogenetic data for Rouïl et. al. 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals"

description: Supplementary phylogenetic data for Rouïl <em>et. al.</em> 2020 "The protector within: Comparative genomics of APSE phages across aphids reveals rampant recombination and diverse toxin arsenals" The data set consists of the following sub-directories: 1) "APSE_conserved_proteins_alns": Single-copy conserved genes codon sequences and alignments in FASTA format. 2) "APSE_phylogeny": Files used for APSE phylogenetic and recombination analyses. 3) "APSE_reannotations": GenBank-formatted files of the assemblies and re-annotations of APSE phages. Newly-sequenced phages deposited at the European nucleotide Archive are also included. ***New in this version*** 4) "APSE_toxin_lyzozyme": Files used for APSE toxin-cassette and lyzozyme-related gene phylogenies. 5) "Arsenophonus_PHASTER": PHASTER phage annotation output files organised by organisim and contig/scaffold. 6) "Hamiltonella_drafts": Newly-sequenced low-coverage draft <em>Hamiltonella</em> genomes in FASTA format. 7) "Hamiltonella_phylogeny": files used for <em>Hamiltonella</em> phylogenetic analysis. See enclosed README.txt file for more details. * ver. 1.1.1: Updated annotations for APSE genomes including inteins missing in previous annotation files.
description: Agence Nationale pour la Recherche (FR) [ANR-10-INBS-09]
DOI: 10.3886/e188021
title: BMi2+ Population Effects of Motivational Interviewing to Reduce Child BMI in Primary Care Practices: An AAP PROS Network Study

description: Pediatric obesity rates in the United States remain at an all-time high. Pediatric primary care clinicians and Registered Dietitians (RDs) can help treat childhood obesity, and motivational interviewing (MI) has shown promising effects in prior trials.
description: Children aged 3-11 years (at enrollment), with BMI values over the 85th percentile, seen in AAP PROS network practices, by enrolled pediatric clinicians. <br>Enrolled parents of enrolled children..
DOI: 10.3886/e188021v1
title: BMi2+ Population Effects of Motivational Interviewing to Reduce Child BMI in Primary Care Practices: An AAP PROS Network Study

description: Pediatric obesity rates in the United States remain at an all-time high. Pediatric primary care clinicians and Registered Dietitians (RDs) can help treat childhood obesity, and motivational interviewing (MI) has shown promising effects in prior trials.
description: Children aged 3-11 years (at enrollment), with BMI values over the 85th percentile, seen in AAP PROS network practices, by enrolled pediatric clinicians. <br>Enrolled parents of enrolled children..
DOI: 10.5281/zenodo.7838780
title: Temporal Synchrony in Satellite-Derived Ocean Parameters in the Inner Sea of Chiloé, Northern Patagonia, Chile

description: GENERAL INFORMATION Title of Dataset: Replication data for: Long-term synchrony in satellite-derived ocean parameters in northern Patagonia, Chile. - General Bathymetry of the Ocean (GEBCO),northern Patagonia. - Daily Chlorophyll-a (Chla, mg m-3), Fluorescence Line Height (nFLH; W m-2 μm-1 sr-1) and surface reflectance at 645nm (Rrs 645). MODIS Level2. - Daily river discharge (m3/s) from Puelo and Futaleufú stations. Dirección General de Aguas (DGA, Chile). - Climatic indices: ENSO Multivariate (MEI v2) and Southern Annular Mode (SAM).
DOI: 10.5281/zenodo.7838779
title: Temporal Synchrony in Satellite-Derived Ocean Parameters in the Inner Sea of Chiloé, Northern Patagonia, Chile

description: GENERAL INFORMATION Title of Dataset: Replication data for: Long-term synchrony in satellite-derived ocean parameters in northern Patagonia, Chile. - General Bathymetry of the Ocean (GEBCO),northern Patagonia. - Daily Chlorophyll-a (Chla, mg m-3), Fluorescence Line Height (nFLH; W m-2 μm-1 sr-1) and surface reflectance at 645nm (Rrs 645). MODIS Level2. - Daily river discharge (m3/s) from Puelo and Futaleufú stations. Dirección General de Aguas (DGA, Chile). - Climatic indices: ENSO Multivariate (MEI v2) and Southern Annular Mode (SAM).
DOI: 10.5281/zenodo.7822140
title: Implementation of GR hydrological models in 95 near-natural catchments across Chile

description: All the files included here contain the data and calibration results produced for the paper "Exploring parameter (dis)agreement due to calibration metric selection in conceptual rainfall-runoff models" accepted for publication in Hydrological Sciences Journal (HSJ). This database summarizes the calibrated parameter sets for the GR4J, GR5J and GR6J conceptual rainfall-runoff models, all coupled to the CemaNeige snow module (i.e., GRXJ + CemaNeige = GRXJCN), using 12 objective functions. The models are configured for 95 near-natural catchments located in Continental Chile. Each basin is identified by a unique code registered in the National Water Bank (BNA by its acronym in Spanish) by the Chilean Water Bureau (DGA; https://dga.mop.gob.cl/). Meteorological forcings and hypsometric curves for each basin studied are also included. The information is organized as follows: - "01 Forcings" : It includes a "Comma-separated value" file (".csv") per basin (according to the notation "BNA code.csv") which contains daily time series of precipitation (P; mm/d), temperature (°C) and potential evapotranspiration (E; mm/d) for the period 1980-01-01 to 2017-12-31. The daily runoff observations (Q; mm/d) and snow water equivalent (SWE; mm) from Cortés et al. (2017) are included. P and T are estimated from the basin-scale average of the CR2Met v2.0 gridded product, while E was calculated using Oudin's formula.<br> - "02 Hypsometry" : It includes a "Comma-separated value" file (".csv") per basin with elevation (in m a.s.l.) vs. area below elevation (in percentage) in the format required by GR models ("BNA code.csv" notation), and the full hypsometric curve ("BNA code_original.csv" notation) retrieved from the SRTM DEM clipped to the basin of interest.<br> - "03 Calibrated parameters": It includes one sub-directory per basin, containing a summary of the calibrated parameters for each combination of model structure (GR4JCN, GR5JCN and GR6JCN) and objective function. Additionally, we include the following "Comma-separated value" (i.e., ".csv") files: - "BNA_select.csv": list of case study basins (BNA code and name).<br> - "Catchment_attributes_CAMELS-CL.csv": catchments attributes directly obtained from CAMELS-CL.<br> - "Catchment_attributes.csv": catchments attributes used for this study. Note that this file contains re-calculated values for climatic attributes.
DOI: 10.5281/zenodo.7822139
title: Implementation of GR hydrological models in 95 near-natural catchments across Chile

description: All the files included here contain the data and calibration results produced for the paper "Exploring parameter (dis)agreement due to calibration metric selection in conceptual rainfall-runoff models" accepted for publication in Hydrological Sciences Journal (HSJ). This database summarizes the calibrated parameter sets for the GR4J, GR5J and GR6J conceptual rainfall-runoff models, all coupled to the CemaNeige snow module (i.e., GRXJ + CemaNeige = GRXJCN), using 12 objective functions. The models are configured for 95 near-natural catchments located in Continental Chile. Each basin is identified by a unique code registered in the National Water Bank (BNA by its acronym in Spanish) by the Chilean Water Bureau (DGA; https://dga.mop.gob.cl/). Meteorological forcings and hypsometric curves for each basin studied are also included. The information is organized as follows: - "01 Forcings" : It includes a "Comma-separated value" file (".csv") per basin (according to the notation "BNA code.csv") which contains daily time series of precipitation (P; mm/d), temperature (°C) and potential evapotranspiration (E; mm/d) for the period 1980-01-01 to 2017-12-31. The daily runoff observations (Q; mm/d) and snow water equivalent (SWE; mm) from Cortés et al. (2017) are included. P and T are estimated from the basin-scale average of the CR2Met v2.0 gridded product, while E was calculated using Oudin's formula.<br> - "02 Hypsometry" : It includes a "Comma-separated value" file (".csv") per basin with elevation (in m a.s.l.) vs. area below elevation (in percentage) in the format required by GR models ("BNA code.csv" notation), and the full hypsometric curve ("BNA code_original.csv" notation) retrieved from the SRTM DEM clipped to the basin of interest.<br> - "03 Calibrated parameters": It includes one sub-directory per basin, containing a summary of the calibrated parameters for each combination of model structure (GR4JCN, GR5JCN and GR6JCN) and objective function. Additionally, we include the following "Comma-separated value" (i.e., ".csv") files: - "BNA_select.csv": list of case study basins (BNA code and name).<br> - "Catchment_attributes_CAMELS-CL.csv": catchments attributes directly obtained from CAMELS-CL.<br> - "Catchment_attributes.csv": catchments attributes used for this study. Note that this file contains re-calculated values for climatic attributes.
DOI: 10.5519/qd.0mzw9sd1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (13482 records)
DOI: 10.5517/ccdc.csd.cc29frzh
title: CCDC 2128397: Experimental Crystal Structure Determination

description: Related Article: Supphachok Chanmungkalakul, Shiqing Huang, Xia Wu, Esther Cai Xia Ang, Zi-Qi Yang, Yongxin Li, Xiaoyu Yan, Choon-Hong Tan, Davin Tan, Xiaogang Liu|2023|Phys.Chem.Chem.Phys.(PCCP)|25|10599|doi:10.1039/D3CP00123G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.