cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24288907.v1
title: Supplementary Material for: Age-dependent Effects of Transgenic 2D2 Mice Used to Induce Passive EAE in C57BL/6 Mice

description: Introduction: Multiple sclerosis (MS) is a neurodegenerative autoimmune disease which worsens with age. Here we examined the influence of age on passive experimental autoimmune encephalomyelitis (P-EAE), a model to study MS, using young and mature adult 2D2 transgenic donor mice to induce pathology in WT C57BL6/J mice. Methods: Lymphocytes from young adult (i.e., 10-week-old) or mature adult (i.e., 6-month-old) transgenic donor mice were characterized by flow cytometry prior to injection of cultured leukocytes into adult female WT recipient mice, with a special focus on transgenic T cell phenotypes. Results: Our findings show age-dependent changes in memory T cell phenotypes correlated with more severe clinical and histological disease when donor cells originated from young as compared to mature adult mice. Conclusion: Not only do these results demonstrate that the age of the 2D2 transgenic donor mice is critical in establishing P-EAE, but the differential effects might also identify age-dependent factors that contribute to EAE and perhaps MS.
DOI: 10.5281/zenodo.8430340
title: Orphanet catalog FAIR Data Point

description: <pre>This is POC FAIR Data Point to describe biobank and patient registry. The content of this FAIR Data Point is extracted via EJPRD LDP</pre>
description: The author is not the creator of this dataset but the user who uploaded it to Zenodo.
DOI: 10.5281/zenodo.8430339
title: Orphanet catalog FAIR Data Point

description: <pre>This is POC FAIR Data Point to describe biobank and patient registry. The content of this FAIR Data Point is extracted via EJPRD LDP</pre>
description: The author is not the creator of this dataset but the user who uploaded it to Zenodo.
DOI: 10.34760/65266ebe3a2d1
title: Seniorlines
DOI: 10.6084/m9.figshare.24279514.v1
title: Data of experiments for peer review

description: Original data and cleaned data from each participant, experimental procedures and figures in the manuscript.
DOI: 10.34760/65266f832fda5
title: SYMBicort in the treatment of EXacerbations of COPD
DOI: 10.34760/65266fcea3c91
title: Systemic Lupus Erythematos Database - Dutch Autoimmune REgistry
DOI: 10.34760/6526703c5003d
title: The Dutch Home Mechanical Ventilation database
DOI: 10.34760/6526708d7b83f
title: The identification of phenotypes in patients with severe Chronic Obstructive Pulmonary Disease
DOI: 10.57745/scjvis
title: fc_all_mags.tar.xz

description: Metagenome-assembled genomes (MAGs) sequences (n=6,622), checkm2 quality and GTDB-Tk report
DOI: 10.57745/l2xzj5
title: fc_1_3_gut.ffn.xz

description: Gene catalogue (nucleotide sequences)
DOI: 10.57745/yz1xcd
title: fc_1_3_gut.faa.xz

description: Gene catalogue (amino acid sequences)
DOI: 10.57745/ihmpmh
title: fc_1_3_gut.344_msps.20231010.tsv.xz

description: Gene content of the MetaGenomic Species
DOI: 10.57745/9i4yul
title: fc_1_3_gut.kegg_107.kofamscan.tsv.xz

description: Functional annotation of the gene catalog with the KEGG 107 database (KO assignments)
DOI: 10.57745/p6wlxf
title: fc_1_3_gut.344_msps.20231010.gtdb_r214_annot_long.tab

description: Taxonomic annotation of the MetaGenomic Species based on GTDB r214
DOI: 10.57745/cjmisw
title: fc_1_3_gut.344_msps.20231010.nwk

description: Phylogenetic tree of the MetaGenomic Species
DOI: 10.6084/m9.figshare.24288274
title: <i>Sargassum horneri</i> Assembled Genome

description: The genomic sequence data generated in the present study offers crucial information for advancing Sargassum horneri research, including functional genomic analysis. Furthermore, the draft genome can serve as a genomic reference for exploring functional products and conducting other genome mining applications.
DOI: 10.6084/m9.figshare.24288316
title: ImageB4 Humanitarian Dataset

description: The ImageB4 Humanitarian Dataset is derived from the Medic dataset and specifically focuses on images related to humanitarian efforts in response to disasters. Images in this dataset are selected based on the "affected_injured_or_dead_people" parameter within the "humanitarian" column.
DOI: 10.5281/zenodo.8422615
title: Numerical data for scattering amplitudes of Neutral Goldstone bosons in 4d.

description: Numerical data for scattering amplitudes of Goldstone bosons in d=4 obtained by solving various optimisation problems. The data is stored in .m files. Mathematica notebook is provided for loading and plotting the data.
DOI: 10.5281/zenodo.8422614
title: Numerical data for scattering amplitudes of Neutral Goldstone bosons in 4d.

description: Numerical data for scattering amplitudes of Goldstone bosons in d=4 obtained by solving various optimisation problems. The data is stored in .m files. Mathematica notebook is provided for loading and plotting the data.
DOI: 10.6084/m9.figshare.24288892
title: HUVEC single cell sequencing after cytokine treatment

description: Combined Anndata object with 8 samples from cultured ECs (HUVEC) in 4 groups (n=2 each) after 7 days of cultivating. Control, TGFb and IL1b, TGFB, IL1b and IFNy and IFNy.
DOI: 10.57745/vwcstw
title: popmap.txt

description: Popmap file used in STACKS during data analyses
DOI: 10.57745/1gnh0t
title: metadata-RADseq-Xylosandrus-crassiusculus.csv

description: Metadata characterizing each individual X. crassiusculus included in the study
DOI: 10.57745/ekyehi
title: metadata-RADseq-Xylosandrus-crassiusculus_V2.tab

description: Metadata characterizing each individual X. crassiusculus included in the study
DOI: 10.57745/nwvhsv
title: Xylosandruscrassiusculus.vcf

description: VCF file corresponding to the RAD loci used for Xylosandrus crassiusculus
DOI: 10.57745/oqc3he
title: ReadMe_RADSeqData_Xylosandrus_Crassiusculus.txt

description: Information necessary to understand the dataset (origin, methods, description of the files)
DOI: 10.25505/fiz.icsd.cc2h6xc0
title: CSD 2300552: Experimental Crystal Structure Determination

description: Related Article: Patrick Schmidt, Elaheh Bayat, Markus Stroebele, H.-Jürgen Meyer|2023|ICSD Communication|||
description: Related Article: Patrick Schmidt, Elaheh Bayat, Markus Stroebele, H.-Jürgen Meyer|2023|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24288913
title: Sample mass spectrometry data for human bottom-up proteomics

description: Sample mass spectrometry data from a bottom-up proteomics analysis of healthy human proteins. Original data source: https://zenodo.org/record/4274987.Data were collected on Thermo's Q-Exactive Plus mass spectrometer after digestion by trypsin.A human proteome FASTA file from UniProt is also included.
DOI: 10.2908/tin00145
title: Number of enterprises in the non-financial business economy by size class of employment
title: Nombre d'entreprises dans l'économie marchande non-financière par classe de taille d'entreprise
title: Zahl der Unternehmen in der nicht-finanziellen gewerblichen Wirtschaft nach Beschäftigungs-Größenklassen

description: Dieser Indikator beschäftigt sich mit der Anzahl der Unternehmen, die zumindest während eines Teils der Referenzperiode aktiv sind. Die Daten sind nach Größenklassen der Beschäftigtenzahl strukturiert.
description: This indicator covers the number of enterprises active during at least part of the reference period. The data is broken down by size classes of persons employed.
description: Cet indicateur couvre le nombre d'entreprises actives pendant au moins une partie de la période de référence. Les données sont ventilées par classes de taille des personnes occupées.
DOI: 10.2908/tin00149
title: Turnover by NACE Rev. 2
title: Chiffre d'affaires par NACE Rév. 2
title: Umsatz nach NACE Rev. 2

description: Umsatz ist die Gesamtsumme (abzüglich der MWSt) aller Verkäufe von Gütern und Dienstleistungen eines Unternehmens eines bestimmten Sektors während der Referenzperiode
description: Turnover is the total of all sales (excluding VAT) of goods and services carried out by the enterprises of a given sector during the reference period.
description: Le chiffre d'affaires est le total de toutes les ventes (hors TVA) de biens et services effectués par les entreprises d'un secteur donné au cours de la période de référence.
DOI: 10.2908/tin00150
title: Value added by NACE Rev. 2
title: Valeur ajoutée au coût des facteurs par NACE Rév.2
title: Wertschöpfung nach NACE Rev. 2

description: Wertschöpfung stellt die Differenz dar zwischen dem Wert dessen, was produziert wird und dem intermediären Verbrauch an Eingängen in die Produktion, abzüglich der Unterstützungsleistungen für die Produktion und der Kosten, Steuern und Abgaben.
description: Value added represents the difference between the value of what is produced and intermediate consumption entering the production, less subsidies on production and costs, taxes and levies.
description: La valeur ajoutée représente la différence entre la valeur de ce qui est produit et la consommation intermédiaire entrant dans la production, moins les subventions sur la production et les coûts, impôts et taxes:
DOI: 10.2908/tin00151
title: Persons employed by NACE Rev. 2
title: Personnes employées par NACE Rév. 2
title: Zahl der Beschäftigten nach NACE Rev. 2

description: Die Anzahl der Beschäftigten ist definiert als die Gesamtzahl der Beschäftigten in den verschiedenen Sektoren: sozialversicherungspflichtig Beschäftigte, nicht-regulär Beschäftigte (z.B. Familienmitglieder, Versandpersonal) unter Ausschluss von Zeitarbeits-Beschäftigten. Länderdaten sind in Einheiten ausgedrückt, europäische Aggregate (EU27 (2007-2013)) in Hunderten.
description: The number of persons employed is defined as the total number of persons working in the various industries: employees, non employees (e.g. family workers, delivery personnel) with the exception of agency workers. Country data are expressed in units. European aggregates (EU27 (2007-2013)) are expressed in 100.
description: Le nombre de personnes employées occupées se définit comme le nombre total de personnes travaillant dans les différentes industries: salariés, non salariés (par exemple, les travailleurs familiaux, les livreurs), à l'exception des travailleurs intérimaires. Les données par pays sont exprimées en unités, les agrégats européens (UE27 (2007-2013)) sont exprimées en 100.
DOI: 10.18419/darus-3732/1
title: nvt1.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732/2
title: run_gmx.sh

description: Bash script to run GROMACS simulations
DOI: 10.18419/darus-3732/3
title: ffnonbonded.itp

description: GROMACS FF file
DOI: 10.18419/darus-3732/4
title: atomtypes.atp

description: GROMACS FF file
DOI: 10.18419/darus-3732/5
title: tip4peps.txt

description: topology file for water
DOI: 10.18419/darus-3732/6
title: conf.gro

description: GROMACS GRO file
DOI: 10.18419/darus-3732/7
title: forcefield.itp

description: GROMACS FF file
DOI: 10.18419/darus-3732/8
title: npt.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732/9
title: topol.top

description: GROMACS FF file
DOI: 10.18419/darus-3732/10
title: nvt3.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732/11
title: molecules.itp

description: GROMACS FF file
DOI: 10.18419/darus-3732/12
title: README.md

description: README file with instructions
DOI: 10.18419/darus-3732/13
title: build_system.py

description: Python script for creating the system
DOI: 10.18419/darus-3732/14
title: prod.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732/15
title: utils.py

description: Python functions
DOI: 10.18419/darus-3732/16
title: nvt2.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732/17
title: ions.txt

description: topology file for ions
DOI: 10.18419/darus-3732/18
title: npt1000.mdp

description: MDP GROMACS file
DOI: 10.18419/darus-3732
title: Molecular simulation scripts for slit nanopores with tunable hydrophilicity

description: GROMACS molecular simulation input files for slit nanopores filled with liquid water. Initial configuration can be generated using the Python script build_system.py. Use the bash script run_gmx.sh to run GROMACS. See the README.md file.
DOI: 10.5281/zenodo.8430485
title: UKESM1 data for "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies".

description: UKESM1 data for "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies". Processed UKESM data used for figure 4 in "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies" by Visioni et al.
DOI: 10.5281/zenodo.8430484
title: UKESM1 data for "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies".

description: UKESM1 data for "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies". Processed UKESM data used for figure 4 in "G6-1.5: a new Geoengineering Model Intercomparison Project (GeoMIP) experiment integrating recent advances in sunlight reflection methods studies" by Visioni et al.
DOI: 10.57801/17fr-za05
title: The Consequences of the Covid-19 Pandemic for Crime in Southwest Germany
title: Die Auswirkungen der Covid-19-Pandemie auf die Entwicklung der Krimi­na­li­tät am Beispiel Baden-Württembergs

description: The project investigates the short- and medium-term effects of the Covid-19-Pandemic on crime in Baden-Würt­tem­berg (southwest Germany) during 2019 to 2021, based on recorded crime data, mobility data and various so­cio-economic and geographic data, and employing spatio-temporal modeling. A special module focusses on do­mes­tic violence against partners and children and the hurdles facing these vulnerable victims when seeking ade­quate help and support during Pandemic times. The findings hopefully will support the work of police and victim support agencies by developing innovative analytical and visual tools and by drawing recommendations for the improvement of support strategies.
DOI: 10.21227/xv22-3r83
title: Data for "Driver-pedestrian interactions at unsignalized crossings are not in line with the Nash equilibrium"

description: &lt;!DOCTYPE html&gt;&lt;html&gt;&lt;head&gt;    &lt;title&gt;Dataset Information&lt;/title&gt;&lt;/head&gt;&lt;body&gt;    &lt;h1&gt;Driver-Pedestrian Interactions at Unsignalized Crossings&lt;/h1&gt;    &lt;p&gt;The following dataset provides all the data used for analysis and modeling in the paper entitled "Driver-pedestrian interactions at unsignalized crossings are not in line with the Nash equilibrium". The file comes with a description so one can replicate the analyses and computational modeling using the information here and in the paper itself. The data contain road user kinematic, demographic, and personality trait information.&lt;/p&gt;        &lt;p&gt;&lt;strong&gt;In case of usage, please cite:&lt;/strong&gt;&lt;/p&gt;    &lt;p&gt;Kalantari, A. H., Yang, Y., Merat, N., Lee, Y.M., & Markkula, G. (2023). Driver-pedestrian interactions at unsignalized crossings are not in line with the Nash equilibrium.&lt;/p&gt;        &lt;p&gt;&lt;strong&gt;DOI:&lt;/strong&gt; &lt;a href="https://doi.org/10.1109/ACCESS.2023.3322959"&gt;10.1109/ACCESS.2023.3322959&lt;/a&gt;&lt;/p&gt;&lt;/body&gt;&lt;/html&gt;
DOI: 10.57801/k6ay-vw92
title: Crime, Insecurities, and Social Dynamics in Urban Neighborhoods
title: Kriminalität, Unsicherheit und soziale Dynamiken städtischer Wohngebiete

description: The ma­jor goal of this study is to ad­vance the un­der­stand­ing of struc­tur­al con­di­tions and so­cial pro­cesses in re­la­tion to crime prob­lems in urb­an neigh­bor­hoods in a lon­git­ud­in­al per­spect­ive. Res­id­ents’ sub­ject­ive per­cep­tions of dis­order and crime as well as col­lect­ive so­cial cap­it­al are key mech­an­isms in the com­plex so­cial pro­cesses shap­ing the de­vel­op­ment of neigh­bor­hoods. This pro­ject con­sti­tutes phase 2 of a long-term study of 139 neigh­bor­hoods in Co­logne and Es­sen, two large cit­ies in North Rhine-West­phalia with high levels of eth­nic di­versity.

After two sur­vey waves in 2014 and 2015, a second round of two waves of a mixed mail/web survey in took place the same neigh­bor­hoods in 2020 and 2021. Sur­vey data are matched to neigh­bor­hood so­ciodemo­graph­ic and crime data with the aim to study the dy­nam­ics of neigh­bor­hood de­vel­op­ment. The ana­lyses fo­cus on fear of crime, dis­order per­cep­tions, col­lect­ive ef­fic­acy and in­ter-eth­nic re­la­tions, and their re­cip­roc­al as­so­ci­ations with struc­tur­al neigh­bor­hood de­vel­op­ment.
DOI: 10.57801/q7rx-e117
title: Criminal Sanctions and Recidivism
title: Legalbewährung nach strafrechtlichen Sanktionen

description: Re­con­vic­tions are in­vest­ig­ated for all per­sons ju­di­cially con­victed in Ger­many. In­form­a­tion is col­lec­ted on the type of of­fense, the type and amount of sanc­tion, pos­sible pre­vi­ous con­vic­tions, the re­gion in which the of­fense  took place, and so­cio-demo­graph­ic char­ac­ter­ist­ics of the of­fend­er such as age and gender. The study based on data from the Federal Register of Criminal Records (Bundeszentralregister) aims to establish a permanent reconviction statistics for Germany.
DOI: 10.6084/m9.figshare.21261677
title: <i>Per1</i> mutation enhances masking responses in mice

description: Light can restrict the activity of an animal to a diurnal or nocturnal niche by synchronizing its endogenous clock (entrainment) which controls the sleep wake cycle. Light can also directly change an animal’s activity level (masking). In mice, high illumination levels decrease activity, i.e. negative masking occurs. To investigate the role of core circadian clock genes <i>Per1</i> and <i>Per2</i> in masking, we used a 5-day behavioral masking protocol consisting of 3 h pulses of light given in the night at various illuminances (4–5 lux, 20 lux and 200 lux). Mice lacking the <i>Per1</i> gene had decreased locomotion in the presence of a light pulse compared to wild-type, <i>Per2</i> and <i>Per1 Per2</i> double mutant mice. <i>Per2</i> single mutant and <i>Per1 Per2</i> double mutant mice did not show significantly different masking responses compared to wild-type controls. This suggests that <i>Per1</i> suppresses negative masking responses in mice.
DOI: 10.6084/m9.figshare.21261677.v2
title: <i>Per1</i> mutation enhances masking responses in mice

description: Light can restrict the activity of an animal to a diurnal or nocturnal niche by synchronizing its endogenous clock (entrainment) which controls the sleep wake cycle. Light can also directly change an animal’s activity level (masking). In mice, high illumination levels decrease activity, i.e. negative masking occurs. To investigate the role of core circadian clock genes <i>Per1</i> and <i>Per2</i> in masking, we used a 5-day behavioral masking protocol consisting of 3 h pulses of light given in the night at various illuminances (4–5 lux, 20 lux and 200 lux). Mice lacking the <i>Per1</i> gene had decreased locomotion in the presence of a light pulse compared to wild-type, <i>Per2</i> and <i>Per1 Per2</i> double mutant mice. <i>Per2</i> single mutant and <i>Per1 Per2</i> double mutant mice did not show significantly different masking responses compared to wild-type controls. This suggests that <i>Per1</i> suppresses negative masking responses in mice.
DOI: 10.6084/m9.figshare.21261677.v1
title: <i>Per1</i> mutation enhances masking responses in mice

description: Light can restrict the activity of an animal to a diurnal or nocturnal niche by synchronizing its endogenous clock (entrainment) which controls the sleep wake cycle. Light can also directly change an animal’s activity level (masking). In mice, high illumination levels decrease activity, i.e. negative masking occurs. To investigate the role of core circadian clock genes <i>Per1</i> and <i>Per2</i> in masking, we used a 5-day behavioral masking protocol consisting of 3 h pulses of light given in the night at various illuminances (4–5 lux, 20 lux and 200 lux). Mice lacking the <i>Per1</i> gene had decreased locomotion in the presence of a light pulse compared to wild-type, <i>Per2</i> and <i>Per1 Per2</i> double mutant mice. <i>Per2</i> single mutant and <i>Per1 Per2</i> double mutant mice did not show significantly different masking responses compared to wild-type controls. This suggests that <i>Per1</i> suppresses negative masking responses in mice.
DOI: 10.25451/flinders.24289030
title: Full MWU List.xlsx

description: Multi-word units (MWUs) are two or more words commonly co-occur. There is evidence that knowledge of high-frequency MWUs is essential to language fluency, leading to growing research identifying valuable MWUs to learn and the impact of L1-L2 congruency and semantic transparency on the learning burden of MWUs. Therefore, there needs to be more research on which MWUs should be selected with these criteria. This article highlights an investigation of the role of congruency and semantic transparency using a corpus-based list that offers a sizable sample of MWUs that appear in general English. In this study, we analysed a list of 11,212 high-frequency MWUs created using a lemmatised concgramming approach to examine the role of semantic transparency and L1-L2 congruency. The list was translated into Persian, and L1-L2 congruency ratings were given to each item. The list was also classified based on Grant and Bauer’s (2004) taxonomy to explore the role of semantic transparency to determine the extent to which these two factors play a role in the learning burden of the MWUs. The results showed that 85% of items were literal, and a low number of opaque items were found in the high L1-L2 congruency rating, suggesting a positive relationship between congruency and transparency.
DOI: 10.25451/flinders.24289030.v1
title: Full MWU List.xlsx

description: Multi-word units (MWUs) are two or more words commonly co-occur. There is evidence that knowledge of high-frequency MWUs is essential to language fluency, leading to growing research identifying valuable MWUs to learn and the impact of L1-L2 congruency and semantic transparency on the learning burden of MWUs. Therefore, there needs to be more research on which MWUs should be selected with these criteria. This article highlights an investigation of the role of congruency and semantic transparency using a corpus-based list that offers a sizable sample of MWUs that appear in general English. In this study, we analysed a list of 11,212 high-frequency MWUs created using a lemmatised concgramming approach to examine the role of semantic transparency and L1-L2 congruency. The list was translated into Persian, and L1-L2 congruency ratings were given to each item. The list was also classified based on Grant and Bauer’s (2004) taxonomy to explore the role of semantic transparency to determine the extent to which these two factors play a role in the learning burden of the MWUs. The results showed that 85% of items were literal, and a low number of opaque items were found in the high L1-L2 congruency rating, suggesting a positive relationship between congruency and transparency.