cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.f4dyua
title: Occurrence Download

description: A dataset containing 102612 records in GBIF matching the query:
SELECT
 '545' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 56.135291543055025
 AND decimalLatitude &lt;= 61.2993700571118
 AND decimalLongitude &gt;= 21.586530565057334
 AND decimalLongitude &lt;= 31.641697361886923
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 102612 records were derived from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004980-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/a3uix8wj7lst
title: MODIS/Aqua Calibrated Radiances 250m 5-Min L1B Wide Swath Subset along CloudSat V002 (MAC02QS1) at GES DISC
DOI: 10.5067/8qe5csnvlwnd
title: MODIS/Aqua CLD Mask Spect. Results 250m and 1km 5-Min L2 Narrow Swath Subset along CloudSat V002 (MAC35S0) at GES DISC
DOI: 10.5067/0jwcipm4jsd9
title: MODIS/Aqua CLD Mask Spect. Results 250m and 1km 5-Min L2 Wide Swath Subset along CloudSat V002 (MAC35S1) at GES DISC
DOI: 10.5067/g7f1ou97eyhm
title: MODIS/Aqua Cld Mask Spect. Test Results 5-Min L2 Swath Subset along MLS V002 (MAM35S0) at GES DISC
DOI: 10.5067/f38f1oxsd0zn
title: MODIS/Aqua Clouds 1km and 5km 5-Min L2 Narrow Swath Subset along CloudSat V002 (MAC06S0) at GES DISC
DOI: 10.5067/stcs145e06ax
title: MODIS/Aqua Clouds 1km and 5km 5-Min L2 Swath Subset along MLS V002 (MAM06S0) at GES DISC
DOI: 10.5067/yi0s7cxlgghb
title: MODIS/Aqua Clouds 1km and 5km 5-Min L2 Wide Swath Subset along CloudSat V002 (MAC06S1) at GES DISC
DOI: 10.5067/w69exyipb97n
title: MODIS/Aqua Geolocation Fields 1km 5-Min 1A Narrow Swath Subset along CloudSat V002 (MAC03S0) at GES DISC
DOI: 10.5067/mf2t1i3stdt6
title: MODIS/Aqua Geolocation Fields 1km 5-Min 1A Swath Subset along MLS V002 (MAM03S0) at GES DISC
DOI: 10.5067/kalor0584045
title: MODIS/Aqua Geolocation Fields 1km 5-Min 1A Wide Swath Subset along CloudSat V002 (MAC03S1) at GES DISC
DOI: 10.5067/tlghpjvyf38t
title: MODIS/Aqua Temp and Water Vapor Profile 5-Min L2 Swath Subset 5km subset along MLS V002 (MAM07S0) at GES DISC
DOI: 10.5067/840xz3mobg93
title: MODIS/Aqua Temp and Water Vapor Profiles 5km 5-Min L2 Narrow Swath Subset along CloudSat V002 (MAC07S0) at GES DISC
DOI: 10.5067/fmycgpeetuxz
title: MODIS/Aqua Temp and Water Vapor Profiles 5km 5-Min L2 Wide Swath Subset along CloudSat V002 (MAC07S1) at GES DISC
DOI: 10.15468/dl.2d6nrr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dicyemennea filiformis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004987-260126135527185/datasets/export for details.
DOI: 10.5281/zenodo.18395993
title: Fold 1

description: Fold 1 containing the training dataset
DOI: 10.6084/m9.figshare.5873226.v1
title: R script from Pattern and process in hominin brain size evolution are scale-dependent

description: R script for (1) running the variance partitioning analyses to get inter-observer error, (2) the clade-level evolutionary mode analysis, (3) calculating R2 and model parameters from the gradualism model, and (4) the lower-level additive partitioning analyses. To run the R script, make sure the file is in the same folder as the main dataset (first saved as a csv file).
DOI: 10.17632/cgp65hn6hn
title: General Hartree-Fock program

description: Abstract Title of program: HF86 Catalogue number: AATK Program obtainable from: CPC Program Library, Queen's University of Belfast, N. Ireland (see application from in this issue) Computer: Vax 11/780; Installation: Vanderbilt University, Nashville, TN 37235, USA Operation system: VMS Version 4.4 Programming language used: FORTRAN 77 Virtual memory: 526 kbytes No. of bits in a word: 32 Peripherals used: disk, printer, terminal No. of lines in combined program and test deck: 4167 ... Title of program: HF86 Catalogue Id: AATK_v1_0 Nature of problem Numerical non-relativistic Hartree-Fock wavefunctions are determined for atoms in a bound state. These are used to predict a variety of atomic parameters. Versions of this program held in the CPC repository in Mendeley Data AATK_v1_0; HF86; 10.1016/0010-4655(87)90053-1 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.6084/m9.figshare.22266991.v2
title: Future Profiles of Texas 123-bus Backbone Transmission (TX-123BT) System

description: Future profiles of Texas 123-bus backbone transmission (TX-123BT) system.
DOI: 10.6084/m9.figshare.22580542.v5
title: Table S9: Human and Mouse HN-scores for Each Gene and ChIP-seq Scores Obtained from the ChIP-Atlas database.

description: Table of HN-scores and ChIP-seq scores (MACS2 score) for each gene. The genes listed in this data are the only human and mouse gene symbols that can be converted.The ChIP-seq score is retrieved from the ChIP-Atlas database (http://chip-atlas.org) (accessed on February 2023). Using the "Target Genes" feature, data were obtained for HSF1, HSF2, and PPARGC1A.
DOI: 10.6084/m9.figshare.5127292.v1
title: Supplementary Material for: <b><i>TP53</i></b> Y220C Is a Hotspot Mutation in Oropharyngeal Squamous Cell Carcinoma

description: <b><i>Objectives:</i></b> Although <i>TP53</i> mutations in head and neck squamous cell carcinoma (HNSCC) have been extensively studied, their association with the different subsites in the head and neck region has never been described. <b><i>Methods:</i></b> Sanger sequence analysis evaluating exons 4-9 in the <i>TP53 </i>gene was performed on 116 HNSCC patients. The exon location, exact codon and corresponding substitution in relation to the anatomical site (subsite) of the HNSCC were evaluated. <b><i>Results:</i></b> We found nonsynonymous <i>TP53</i> mutations in 70% (81/116) of the patients. In oral cavity carcinomas, most mutations occurred in exon 7 (37%). In oropharyngeal and laryngeal tumors, mutations were mainly found in exons 6 and 7. The most common mutation was located in codon 220, and all of these were an Y220C mutation. Five out of nine (56%) Y220C mutations occurred in oropharyngeal tumors. Additionally, 22% of all mutations observed in oropharyngeal squamous cell carcinoma (OPSCC) consisted of Y220C mutations. <b><i>Conclusion:</i></b> In this study, the subsite-related distribution of <i>TP53</i> mutations underlines the biological diversity between tumors arising from different anatomical regions in the head and neck region. Moreover, the Y220C mutation was by far the most prevalent <i>TP53</i> mutation in HNSCC and a relative hotspot mutation in the oropharynx.
DOI: 10.6084/m9.figshare.5644588.v1
title: Unilateral extravesical ureteral reimplantation via inguinal incision for the correction of vesicoureteral reflux: a 10-year experience

description: ABSTRACT Introduction and Objective: Multiple options exist for the surgical management of vesicoureteral reflux (VUR). We report on our 10-year experience using the inguinal approach to extravesical ureteral reimplantation (EVR). Materials and Methods: Patient characteristics of age, gender, and reflux grade were obtained and outcomes of operative time, hospital stay, and radiographic resolution were assessed. Results: 71 girls and 20 boys with a mean age of 74 months (range 14-164) underwent inguinal EVR via a 3.5-cm inguinal mini-incision. Mean follow up was 10.9 months (range 0.4-69.7). Average grade of reflux was 2.80. Average operative time was 91 minutes (range 51-268). The procedure was successful in 87 of 91 patients (95.6%). The 3 cases of reflux that persisted were all grade 1 and managed expectantly. Contralateral reflux developed in 9 cases, all of which resolved after treatment with either Deflux or ureteral reimplant. There were 4 case of urinary retention that resolved after a brief period of CIC or indwelling catheterization. There were no cases of ureteral obstruction. Most patients were discharged on post-operative day 1 (85/91) and no hospitalization extended beyond 3 days. Conclusions: The inguinal approach to extravesical ureteral reimplantation should be considered as a potentially minimally invasive alternative to endoscopic and robotic treatment of VUR with a success rate more comparable to traditional open approaches. We feel it is the method of choice in cases of unilateral VUR requiring surgical correction.
DOI: 10.6084/m9.figshare.5778180.v1
title: Table 1

description: Measure the step width with a wearable system composed by ad infrared range sensor, a screen and an inertual measuremetn unit
DOI: 10.6084/m9.figshare.7879340.v2
title: Amplification of plant volatile defence against insect herbivory in a warming Arctic tundra

description: Supplementary data for the article:<br>Li et al. (2019). Amplification of plant volatile defence against insect herbivory in a warming Arctic tundra. Nature Plants. http://dx.doi.org/10.1038/s41477-019-0439-3 <br>The study employs long-term in situ warming to assess the impacts of warming and insect herbivory on plant volatile organic compound emissions from the widespread circumpolar dwarf birch (Betula nana), a major player in ongoing Arctic greening. The experiment comprises open top chambers in place during summer on an arctic tundra heath in northern Sweden for 8 and 18 years in a randomized complete block design. The study involves three independent experiments. The first experiment describes the impacts of experimental warming and mimicked insect herbivory (exogenous application of methyl jasmonate) on Betula nana volatile emissions (n=18). The second experiment describes volatile emission kinetics of Betula nana upon either real insect herbivory (autumnal moth, Epirrita autumnata) or mimicked insect herbivory (n=4). The third experiment describes the effects of experimental warming on insect herbivory pressure on Betula nana (n=18).
DOI: 10.17632/pmjrc8kw9x
title: Mass cytometry reveals a conserved immune trajectory of recovery in hospitalized COVID-19 patients. Burnett, Okholm, Tenvooren et al. 

description: Mass cytometry data from hospitalized COVID-19 patients. FCS files are normalized to remove batch effect and subsequently gated for CD45+ cells. File names represent 'batch_patientID day'.
DOI: 10.6084/m9.figshare.12369209.v4
title: 84K_genome.zip

description: <i>Populus alba</i> × <i>P. glandulosa</i> clone 84K is widely cultivated and used as a model tree in the molecular research of woody plants because it is very easy for gene transformation. In this study, we performed PacBio sequencing and assembled the genome with a size of 781.36 Mb (mega base).
DOI: 10.6084/m9.figshare.13122881.v1
title: Rooting the animal tree of life

description: There has been considerable debate about the placement of the root in the animal tree of life, which has emerged as one of the most difficult problems in animal phylogenetics. This debate has major implications for our understanding of the earliest events in animal evolution, including the origin of the nervous system. Some phylogenetic analyses support a root that places the first split in the phylogeny of living animals between sponges and all other animals (the Porifera-sister hypothesis), and others find support for a split between comb jellies and all other animals (Ctenophora-sister). These analyses differ in many respects, including in the genes considered, species considered, molecular evolution models, and software. Here we systematically explore the rooting of the animal tree of life under consistent conditions by synthesizing data and results from 15 previous phylogenomic studies and performing a comprehensive set of new standardized analyses. It has previously been suggested that site-heterogeneous models favor Porifera-sister, but we find that this is not the case. Rather, Porifera-sister is only obtained under a narrow set of conditions when the number of site-heterogeneous categories is unconstrained and range into the hundreds. Site-heterogenous models with a fixed number of dozens of categories support Ctenophora-sister, and cross-validation indicates that such models fit the data just as well as the unconstrained models. Our analyses shed light on an important source of variation between phylogenomic studies of the animal root. The datasets and analyses consolidated here will also be a useful test-platform for the development of phylogenomic methods for this and other difficult problems.<br>
DOI: 10.6084/m9.figshare.5104408.v1
title: Supplementary Material for: Integration of chicken genomic resources to enable whole-genome sequencing

description: Different genomic resources in chicken were integrated through the Wageningen chicken BAC library. First, a BAC anchor map was created by screening this library with two sets of markers: microsatellite markers from the consensus linkage map and markers created from BAC end sequencing in chromosome walking experiments. Second, <i>Hin</i>dIII digestion fingerprints were created for all BACs of the Wageningen chicken BAC library. Third, cytogenetic positions of BACs were assigned by FISH. These integrated resources will facilitate further chromosome-walking experiments and whole-genome sequencing.
DOI: 10.6084/m9.figshare.5270992.v1
title: Yuri Kriel - HIIT versus CMIE

description: Data for research article: HIIT vs CMIE
DOI: 10.17632/8xmxpz9z3v
title: Data for: Label comprehension of a combined mifepristone and misoprostol for medical abortion: a pilot study

description: Raw data, frequency tables
DOI: 10.6084/m9.figshare.4141617.v1
title: SI for Prediction of pKa values for drug-like molecules using semiempirical quantum chemical methods

description: <b>Tables_latex.zip</b>All tables in Latex format<b><br></b><b>Figures.zip: </b>Fig 1: Chemdraw fileFig 2: csv + python codexyz coordinates and PyMolSee README file<br><b>smiles+code.zip</b>SMILES strings for all moleculesPython code used to protonate + compute pKa from energiesSee README file<br><b>table3.zip</b>all input files + MOPAC output (GAMESS output was too big)<br><b>link to Google sheet used for data analysis </b>https://goo.gl/kOMMnm<br>
DOI: 10.15131/shef.data.5632774.v1
title: Data for "Evaluation of the bone glycocalyx mechanical properties by AFM nanoindentation"

description: Pre-processed data obtained by AFM nano-indentation of MLO-A5 pre-osteocyte cells. The data pre-processing consisted in contact point fitting, tip-sample separation correction and drift correction of raw data, all performed in MATLAB (v2016a).<br><br>The experimental methodology and data processing are described in the author's thesis (Chapter 4).<br>Methods<br>* AFM cantilever preparation<br>Spherical tipped cantilevers were prepared. To increase the possibility of sensing the glycocalyx, softer cantilevers were chosen with nominal spring constant equal to 0.01 N/m (Windsor Scientific) and silica beads of different sizes were tested (D = 1; 2:5; 6 μm, Bangs Laboratories).<br><br>* AFM set-up<br>A NanoWizard 3 atomic force microscope (JPK Instruments AG) coupled to an Eclipse Ti-S optical inverted microscope (Nikon Instruments) was used for all the experiments.The cells were washed in phosphate buffer solution (PBS) and fresh medium was added. Samples were positioned on the heated sample holder to allow for testing at 37◦C. Single cells were located through the coupled optical microscope and images of cell shape were recorded for morphological analysis. The cantilever was centred over the location of interest and a grid of 5 points spaced 3 μm within each other was set. Force spectroscopy measurements were obtained on the 5-point grid for 3 times to collect a total of 15 data on each location. The relative set point and the approach velocity were set to 10 nN and 4 μm/s respectively. <b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.13146443.v1
title: Leaf Features-Oak decline-dataSet

description: The data is related to some Persian oak leaf features influenced by Charcoal oak disease.
DOI: 10.6084/m9.figshare.19826050.v1
title: Raw data for figures

description: Data for figure1-4
DOI: 10.6084/m9.figshare.25556955.v2
title: NoPrecessedData of nanomaterials that induce DNA cleavage

description: dataset of nanomaterial that induced DNA cleavage
DOI: 10.6084/m9.figshare.28837544.v1
title: COREQ_Checklist for reporting the qualitative research.docx

description: COREQ checklist used th describe the Qualitative study titled “<b>Empowering Healthcare Access: </b><b>Ethnographic Insights into Sustainable Solutions for a Particularly Vulnerable Tribal Group (PVTG) in South India- a Qualitative Research”</b>.
DOI: 10.6084/m9.figshare.29083496.v1
title: Gridded data of embodied carbon from copper

description: 5,538,063 records are weight in urban building ECE of copper in two urban agglomerations from 2000 to 2020 at 500×500m grid scale.
DOI: 10.6084/m9.figshare.3516359.v1
title: Appendix B. Equations for rmax(θ), rmin(θ), θmax, and θmin.

description: Equations for rmax(θ), rmin(θ), θmax, and θmin.
DOI: 10.6084/m9.figshare.6189335.v1
title: Beta0 for the climate space weighted regressions

description: Spatialized monthly values for the intercept (beta0) term of the climate space weighted regression (CSWR).
DOI: 10.17632/nyyvnb9nh9
title: Original blots for manuscript "Microglial-derived C1q integrates into neuronal ribonucleoprotein complexes and impacts protein homeostasis in the aging brain"

description: Raw western blot images from corresponding manuscript "Microglial-derived C1q integrates into neuronal ribonucleoprotein complexes and impacts protein homeostasis in the aging brain"
DOI: 10.17632/rp37gnrnv9
title: Data for: Application of the group contribution volume translated Peng-Robinson equation of state to new commercial refrigerant mixtures

description: Supporting Information, including additional figures
DOI: 10.6084/m9.figshare.23899332.v2
title: Images of Shrew Skulls Based on Dorsal, Jaw, Lateral and Ventral Views

description: This folder contains three subfolders of TIFF images of the shrew skulls of Crocidura malalayana,Crocidura monticola and Suncus murinus for dorsal,jaw, lateral and ventral view. From these images, landmark coordinate data were taken using the tpsDIG2 software.
DOI: 10.6084/m9.figshare.26494288.v2
title: Data1_1 - Copy.xls

description: SEEQ Data
DOI: 10.6084/m9.figshare.28749215.v1
title: Rabbits data

description: Values of pulse rate (PR), hemoglobin oxygen saturation (SpO₂) and clinical heart rate (cHR), and mean clinical heart rate (mcHR) in 50 rabbits. The PR and SpO₂ values were recorded using three different devices: Masimo Rad-5 with Y clip (device 1), Edan VE-H100B with Y clip (device 2), and Edan VE-H100B with Nellcor OxiMax adhesive finger sensor (device 3), with measurements taken on the forelimb and tail.
DOI: 10.6084/m9.figshare.29033654.v1
title: Data and Code for Suri et al. (2025)

description: Data and Code accompanying Suri et al. (2025)
DOI: 10.6084/m9.figshare.10084619.v1
title: PLAID - A Voltage and Current Measurement Dataset for Plug Load Appliance Identification in Households

description: The 2019 version of Plug-Load Appliance Identification Dataset (PLAID), containing voltage and current measurements from different electrical household appliances sampled at 30 kHz, collected at 65 different locations in Pittsburgh, Pennsylvania (US).
DOI: 10.6084/m9.figshare.7040249.v1
title: Table S1. Wild and Recombinant Bacteria.

description: Table S1. Wild and Recombinant Bacteria.
DOI: 10.17632/5mjd8kbvbd
title: Retail Trader Sophistication and Stock Market Quality Dataset and Code

description: This is the replication code and data used in Eaton, Green, Roseman, and Wu "Retail Trader Sophistication and Stock Market Quality: Evidence from Brokerage Outages", forthcoming at the Journal of Financial Economics.

For data that is licensed, such as CRSP and TAQ, sample datafiles are used with meaningless numbers.
DOI: 10.17632/kj3ntnt6vb
title: Semla Example Data

description: Visium datasets used in examples and tutorials for the semla R package (https://github.com/ludvigla/semla). 

Visium is a spatially resolved transcriptomics technology used to measure gene expression profiles with spatial resolution from tissue sections. Two datasets are provided:

1. Coronal tissue section of the mouse brain - a gene expression matrix, histological images at different resolutions and additional coordinate files which can be used as input for data analysis with semla. 
2. A tissue section of a mouse intestine "swiss roll" - a gene expression matrix, histological images at different resolutions and additional coordinate files which can be used as input for data analysis with semla. The data was originally generated by Parigi et al. (https://www.nature.com/articles/s41467-022-28497-0)

More information can be found at our package website (https://ludvigla.github.io/semla/)
DOI: 10.6084/m9.figshare.29142554.v1
title: Data ForceDecks .xlsx - CMJ.csv

description: Dataset for the study: 'The Influence of Interlimb Asymmetry and Force Production on Vertical Jump Performance Across Athlete Populations'. Contains anonymized countermovement jump (CMJ) kinetic and performance data for 80 male athletes (recreational, basketball, volleyball, soccer) across two testing sessions. Variables include jump height, peak force, peak power, and derived asymmetry metrics from dual force plates.
DOI: 10.17632/2rtdsj2f3p
title: Data for risk-based lean performance assessment

description: This dataset presents a delay-based lean performance assessment. A survey was designed based on analytic hierarchy process algorithm to measure the effectiveness of forty lean tools on four project delay sources. The survey focused on experts’ opinions, experiences and knowledge of construction project delays and lean management tools. The experts were asked to prioritize the selected alternatives (lean tools) and to distinguish in general the tools which are more or less important. The alternatives in each level were compared with each other using analytic hierarchy process and the values obtained are highlighted in one file (Lean_delay-based_data.xlsx) containing pairwise comparison, weights, normalization, priority values, random index, lambda(max), consistency index and consistency ratio. For every criterion (four main delay sources), pairwise comparisons were made for the alternatives, that is, forty lean tools. Synthesis of the weights from the pairwise comparisons was undertaken and their normalized values were calculated to obtain their respective eigenvalues.
DOI: 10.17632/jf2m75vvz8
title: Bank lending standards and monetary transmission in the euro area

description: see readme file
DOI: 10.6084/m9.figshare.11936250.v1
title: Patterson et al. (2020) Evolutionary relationships and population genetics of the Afrotropical leaf-nosed bats (Chiroptera: Hipposideridae). ZooKeys

description: DNA sequence alignments used in analyses for Patterson et al. (2020) Evolutionary relationships and population genetics of the African leaf-nosed bats (Chiroptera: Hipposideridae). ZooKeys<br>