cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15125/bath-00083
title: Cross-metathesis of microbial oils for the production of advanced biofuels and chemicals

description: A range of microbial oils were cross-metathesized with ethene using Hoveyda-Grubbs 2nd generation catalyst. The products formed from the microbial oils were compared to alternative first and second generation oils. Upon separation, three separate fractions were produced: an alkene hydrocarbon fraction or aviation fuel fraction (AFF), a shorter chain triglyceride fraction that upon transesterification was suitable as a road transport fuel (RTF) and a volatile short-chain alkene fraction (gas phase fraction, GPF). The fuel fractions were purified through distillation and compared to the relevant fuel standards. Though there was variation for the road transport fuel fraction due to the presence of long chain saturates, all the RTF produced fell within the ASTM standard for biodiesel. The AFF was found to be highly suitable for aviation, falling entirely within the DEF-STAN fuel standard. In addition the AFF possessed a higher energy density than Jet A-1 while 1-decene was found to have a higher oxidative stability than jet fuel. Finally, the GPF was found to predominantly contain propene, butene and pentadiene isomers, all of which have application in the polymer industry. With further development, this process could provide the basis for a microbial oil biorefinery for the production of sustainable biofuels and polymer precursors.
description: The data in this archive was collected under standard laboratory conditions. Full details of the experimental methods used are available in the experimental section of the corresponding publication.
description: The source information for the figures presented in the publication is presented in one excel sheet called 'Data'. The NMR spectra from the oxidation are grouped in the folder "1-decene oxidation", each spectra is in a separate file with the time of oxidation as the title. Specialist NMR software (such as TopSpin) will be needed to access the data from these files. The GC data is also given, in the folder labelled "GC-MS". The folders are labelled with their contents and files detailing the peaks and integrals can be read using any typical internet browser or excel. The data taken from these source files has also been grouped in excel files. Physical properties data is given in one excel spreadsheet labelled 'Physical Properties'.
DOI: 10.15125/bath-00084
title: Production of lipid from depolymerised lignocellulose using the biocontrol yeast, Rhodotorula minuta: The fatty acid profile remains stable irrespective of environmental conditions

description: The oleaginous yeast Rhodotorula minuta has been used previously as a biocide agent and for the production of β-carotene. In addition, R. minuta has been shown to produce up to 40% lipids, while demonstrating a faster growth rate than the similar oleaginous yeasts; Lipomyces starkeyii and Rhodotorula glutinis. In this study this promising yeast was evaluated for its potential to produce glyceride lipids under the harsh conditions and complex sugar mixtures produced from depolymerised lignocellulose. The fatty acid profile of R. minuta was not found to change significantly irrespective of the environmental conditions and contained approximately 20% palmitic acid, 5% stearic acid, 60% oleic acid and 15% linolenic acid. R. minuta was found to grow on a range of sugars, and could consume xylose and glucose when both sugars were present, however, R. minuta was found to be highly sensitive to inhibitors, such as furfurals and organic acids, formed under the harsh lignocellulose depolymerisation conditions. Accordingly R. minuta did not grow well on biomass depolymerised with an acid pre-treatment stage. However, R. minuta was cultured successfully on food waste depolymerised with no additional acids, producing up to 19 g /L cell mass with a lipid content of up to 25% of the dry cell weight.
description: A range of analytical techniques have been used to collect the data, full information is availlable in the experimental section of the corresponding paper.
description: The source information for the figures presented in the publication is presented in excel speadsheets labelled with the figure or table number. In the excel spreadsheets there are individual tabs with source data and the figures themselves. The files only need a current version of microsoft excel to access them, Jpgs. are also given of figure 1 generated from Matlab (the source data is presented in an excel sheet labelled Fig 1).
DOI: 10.15125/bath-00086
title: Dataset for Shear strength theories for beams of variable depth

description: Dataset for the IASS/ISOFF conference paper 'Shear strength theories for beams of variable depth'
DOI: 10.13145/bacdive1701.20240510.9
title: Bifidobacterium cuniculi Scardovi et al. 1979 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00078
title: Dataset supporting "Hierarchical 3D ZnO Nanowire Structures via Fast Anodization of Zinc" published in Journal of Materials Chemistry A, 2015

description: This dataset contains all of the original data used in the preparation of the publication titled "Hierarchical 3D ZnO Nanowire Structures via Fast Anodization of Zinc" and including any supplementary information. Data includes original FESEM and TEM micrographs in addition to materials characterisation data such as XPS, XRD, and FT-IR.
description: Details of the data collection method and all experimental details can be found within the published manuscript which is provided with full open access.
description: Further relevant documentation may be found in the following resources.

   Miles, D. O., Cameron, P. J., and Mattia, D.,  2015.   Hierarchical 3D ZnO nanowire structures via fast anodization of zinc.    Journal of Materials Chemistry A, 3(34), 17569-17577.  Available from: https://doi.org/10.1039/c5ta03578c.
DOI: 10.15125/bath-00088
title: Minimizing group index variations in a multicore endoscope fiber

description: Data for results in "Minimizing group index variations in a multicore endoscope fiber" paper.
description: The variation in group index was measured using a low coherence scanning Mach-Zehnder interferometer utilizing a fiber-based optical supercontinuum with a 10 nm band-pass filter centered at 800 nm as a low-coherence light source. The input and output ends of the sample fiber were translated with respect to the coupling lenses in order to study different cores while maintaining the path outside of the optical fiber constant.
DOI: 10.15125/bath-00089
title: Data set for CLEO paper "Double Pass Gain in Helium-Xenon Discharges in Hollow Optical Fibres at 3.5μm"

description: Data from Helium Xenon discharges in hollow core fibre, including electrical properties (current, voltages), output signal and spectra
description: The ends of the fibre were held inside a pair of gas cells for the evacuation and delivery of gas to the system, inside which a pair of electrodes were positioned near the fibre ends to deliver a DC high voltage of up to 40 kV with a variable current. The electrical characteristics were then measured using a multimeter. The anode gas cell featured a large calcium fluoride window perpendicular to the fibre, and the cathode had a sapphire window for the output signal. The fibre used had a hollow core inner diameter of approximately 120 μm, and a low loss guidance band from 3–4 μm (< 0:18 dB/m at 3:5 μm). The spectrometer (Bentham DTMc300) had a grating with 300 grooves/mm and a cryogenically cooled InSb detector for the range at 3–4 μm.
description: The data was analysed using Microsoft Excel, and the final figures were plotted in Matlab.
DOI: 10.13145/bacdive1705.20240510.9
title: Bifidobacterium gallinarum subsp. gallinarum (Watabe et al. 1983) Liu et al. 2020

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1706.20240510.9
title: Bifidobacterium globosum (ex Scardovi et al. 1969) Biavati et al. 1982 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00092
title: Dataset for "Carbohydrate-rich breakfast attenuates glycaemic, insulinaemic and ghrelin response to ad libitum lunch relative to morning fasting in lean adults"

description: Breakfast omission is associated with obesity and cardiovascular disease/diabetes, but the acute effects of extended morning fasting upon subsequent energy intake and metabolic/hormonal responses have received less attention. In a randomised crossover design, thirty-five lean men (n=14) and women (n=21) extended their overnight fast or ingested a typical carbohydrate-rich breakfast in quantities relative to resting metabolic rate (i.e. 1963±238 kJ), before an ad libitum lunch 3 hours later. Blood samples were obtained hourly throughout the day until 3 hours post-lunch, with subjective appetite measures assessed. Lunch intake was greater following extended fasting (640±1042 kJ, P<0.01) but incompletely compensated for the omitted breakfast, with total intake lower than the breakfast trial (3887±1326 kJ vs 5213±1590 kJ, P<0.001). Systemic concentrations of peptide tyrosine-tyrosine and leptin were greater during the afternoon following breakfast (both P<0.05) but neither acylated/total ghrelin concentrations were suppressed by the ad libitum lunch in the breakfast trial, remaining greater than the morning fasting trial throughout the afternoon (all P<0.05). Insulin concentrations were greater during the afternoon in the morning fasting trial (all P<0.01). There were no differences between trials in subjective appetite during the afternoon. In conclusion, morning fasting caused incomplete energy compensation at an ad libitum lunch. Breakfast increased some anorectic hormones during the afternoon but paradoxically abolished ghrelin suppression by the second-meal. Extending morning fasting until lunch altered subsequent metabolic and hormonal responses but without greater appetite during the afternoon. This study clarifies the impact of acute breakfast omission and adds novel insights into second-meal metabolism.
DOI: 10.13145/bacdive1707.20240510.9
title: Bifidobacterium indicum Scardovi and Trovatelli 1969 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00091
title: Dataset for "Timing of replication is a determinant of neutral substitution rates but does not explain slow Y chromosome evolution in rodents"

description: The dataset consists of intronic substitution rates (Ki) for mouse-rat orthologs using the July 2007 (mm9) and November 2004 (rn4) assemblies respectively, both obtained from the UCSC Table Browser. Intronic substitution rates were corrected for multiple hits according to the model of Tamura and Kumar (2002) Mol Biol Evol, 19:1727-1736. The dataset was further filtered to control for selective effects as described in the methodologies of Pink et al. (2009) Genome Biol Evol. 1:13-22, and Pink and Hurst (2010) Mol Biol Evol. 27(5): 1077-1086. Two intronic substitution rate datasets are provided: The main findings of Pink and Hurst (2010) were based on a filtered dataset, purged of all introns thought to be evolving under purifying selection that had failed a test for clusters of conserved bases, potentailly indicative of hidden functional sites. An unfiltered dataset underpins supplementary findings. Full details of the test and other filters for selection are provided in Pink et al. (2009). 

The dataset combines intronic substitution rates with mouse replication times. Replication timing data for mouse cell lines prior to differentiation were downloaded from www.replicationdomain.org (Hiratani et al. (2008) PLoS Biol, 6:e245). The four available datasets were treated as replicates: Three derived from embryonic stem cells and a fourth derived from induced pluripotent stem cells (iPS). Positive values were indicative of early replication and negative values were indicative of replication later during S-phase.

Positions of genes on the mouse genome were defined by the terminal 5’ and 3’ base pairs of the coding sequence. These positions were obtained from annotations of the July 2007 assembly (mm9). As mouse replication timing data were assigned genomic coordinates based on the February 2006 assembly (mm8), the stand alone liftOver utility and associated chain file mm9ToMm8.over.chain, both obtained from UCSC, were used to convert positions between builds. Genic replication times were then taken from an average of times determined for probe positions overlapping with any part of the orthologous gene, within the limits of the coding sequence. Both means and medians are provided for each gene.

The dataset also includes intronic GC content and extent of intronic G+T skew for each ortholog, the latter used as a proxy for germ-line expression rate. The published datasets are the original .txt and .xls formats produced by the scripts, as well as .xlsx and .csv versions for preservation purposes, containing the variables described above. Details of methodologies are provided both in the publications Pink et al. (2009) and Pink and Hurst (2010), as well as the accompanying readme file. The readme file also contains details of the original sources of input data. Scripts used to process these input data and create the final datasets are also provided.
DOI: 10.13145/bacdive1709.20240510.9
title: Bifidobacterium longum subsp. longum (Reuter 1963) Mattarelli et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1711.20240510.9
title: Bifidobacterium magnum Scardovi and Zani 1974 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00097
title: Dataset related to the paper "Environmental performance of nano-structured Ca(OH)2/TiO2 photocatalytic coatings for buildings"

description: Dataset related to the paper: "Environmental performance of nano-structured Ca(OH)2/TiO2 photocatalytic coatings for buildings" published in  "Building and Environment" in June 2015
DOI: 10.13145/bacdive1712.20240510.9
title: Bifidobacterium minimum Biavati et al. 1982 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive1713.20240510.9
title: Bifidobacterium pseudocatenulatum Scardovi et al. 1979 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00100
title: Dataset for "Norm Awareness for Virtual Characters Behaviour: A Socio-Cognitive Approach"

description: This dataset comprises video clips and source code accompanying the thesis "Norm Awareness for Virtual Characters Behaviour: A Socio-Cognitive Approach". The thesis proposes a new computational model, Distributed Norm-Aware Agent Architecture (DNA3), for increasing the verisimilitude of the behaviour of virtual characters (in a simulated world such as SecondLife) by incorporating reasoning about social norms. The model integrates a normative framework performing the social reasoning, a cognitive agent carrying out run-time norm-aware deliberation, and a virtual character in charge of perception and realisation of actions.

This dataset includes the Java and C# source code for the Bath-Sensor-Framework (BSF) middleware, and Java code implementing the N-Jason virtual agent, as described in chapter 3 of the thesis. Video clips showing this code in operation, referenced in chapters 6 and 7 of the thesis, are also included.
description: The source code bundles contain software compiled for a Windows 7 platform. The videos are in Advanced Systems Format (Windows Media Video).
description: The videos and source code are described in detail in the thesis.
description: Further relevant documentation may be found in the following resources.

   Lee, J.,  2015.   Norm Awareness for Virtual Characters Behaviour: A Socio-Cognitive Approach.     Thesis (PhD).    University of Bath.   Available from: https://researchportal.bath.ac.uk/en/studentTheses/norm-awareness-for-virtual-characters-behaviour-a-socio-cognitive.   

   Jason Developers,   n.d.   Jason: a Java-based interpreter for an extended version of AgentSpeak.         Sourceforge.   Available from: http://jason.sourceforge.net/wp/.
DOI: 10.13145/bacdive1717.20240510.9
title: Bifidobacterium pseudolongum Mitsuoka 1969 emend. Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00099
title: Data for cryocharging and cryokinetics analysis of hydrogen storage in MIL-101 (Cr) and AX-21.

description: Data for high-pressure hydrogen adsorption in MIL-101 (Cr) and AX-21. Includes:
- Excel files (.xlsx) with isotherm data as excess uptake of hydrogen in weight percent (mass of hydrogen divided by dry mass of sample) for the metal-organic framework material MIL-101 (Cr) at 77, 90, 100, 110, 130, 150, 200 and 292 K and up to 12 MPa and for the activated carbon AX-21 at 90, 100, 110, 120, 150, 200 and 298 K and up to 18 MPa. 
- Excel files (.xlsx) with rational fits to the compressibility of hydrogen using the Leachman's equation of state for 77, 90, 100, 110, 120, 130, 150, 200, 292 and 298 K, up to 20 MPa.
- Excel files (.xlsx) with kinetic data for hydrogen excess uptake (micromols), pressure (MPa) and sample temperature (K) as a function of time for the MIL-101 (Cr) 77 and 90 K isotherm and for the AX-21 90 K isotherm. 
- Origin files (.opj) with the analysis of the isotherm data for the cryocharging
- Origin files (.opj) with the analysis of the kinetic data using the linear driving force model
- Image files (.tif) for the SEM micrographs for the MIL-101 (Cr) and AX-21, and image files (.tif) for the particle analysis using Image J. 

Manuscript for the results in this dataset (forthcoming): "High-pressure adsorptive storage of hydrogen in MIL-101 (Cr) and AX-21 for mobile applications: cryocharging and cryokinetics" by Nuno Bimbo, Wesley Xu, Jessica E Sharpe, Valeska P Ting and Timothy J Mays
description: Experimental data was collected on a volumetric sorption apparatus Hiden HTP-1 (Hiden Isochema, Warrington, UK), with the isotherm data published previously (http://dx.doi.org/10.1007/s10450-013-9575-7). The experimental data in this dataset includes the isotherm data and the kinetic data, which is available from the equipment.
description: Isotherm and kinetic data were processed in Origin Pro 9.1 (OriginLab Corporation, Northampton, MA, USA). All the analysis files are available from this dataset. SEM images were analysed with Image J, with the results files also available from this dataset.
DOI: 10.13145/bacdive1718.20240510.9
title: Bifidobacterium pullorum subsp. pullorum (Trovatelli et al. 1974) Nouioui et al. 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15125/bath-00098
title: Data for Ab Initio Molecular-Dynamics Simulation of Neuromorphic Computing in Phase-Change Memory Materials

description: Raw data to accompany the article Ab Initio Molecular-Dynamics Simulation of Neuromorphic Computing in Phase-Change Memory Materials.
description: Further relevant documentation may be found in the following resources.

   Skelton, J. M., Loke, D., Lee, T., and Elliott, S. R.,  2015.   Ab Initio Molecular-Dynamics Simulation of Neuromorphic Computing in Phase-Change Memory Materials.    ACS Applied Materials & Interfaces, 7(26), 14223-14230.  Available from: https://doi.org/10.1021/acsami.5b01825.
DOI: 10.15125/bath-00101
title: Dataset for mid IR gas laser

description: The data to generate figures 3 – 8: 
1.	Csv file (Figure 3(a)): contains the attenuations of the feedback fiber for figure 3(a) ; 
2.	Csv file (Figure 3(b)): contains the P(9) absorption line for figure  3 (b); 
3.	Csv file (Figure 4(a)): contains optical spectra for different pump transitions in figure 4(a); 
4.	Csv file (Figure 5(a)): contains the CW pump power/output power and stability of laser output as a function of time for figure 5(a);
5.	Csv file (Figure 5(b)): contains the stability of laser output as a function of time for figure 5(b);
6.	Csv file (Figure 5(b) inset): contains the mode profile of 3um laser for figure 5(b) inset;
7.	Csv file (Figure 6): contains the Measured output power as a function of pump repetition rate for figure 6;
8.	Csv file (Figure 7): contains pump power/output power at selected repetition rates shown in figure 7. 
9.	Zip file (Figure 8): contains csv file of radio frequency spectra (a), optical spectra (b) and time dependence (c) for the pump (blue) and the laser (red) at selected repetition rates shown in figure 8.
description: The fiber attenuation was measured by using the cut-back method. The Tungsten lamp was used as the whitelight source. A 300 mm focal length scanning spectrometer (Bentham Instruments TMc300) was used for all spectral measurements at mid-infrared wavelengths, which has a 300 lines/mm grating and a liquid-nitrogen-cooled InAs detector (Electro-Optical Systems S-010-LN4). . 
The acetylene (12C2H2) P(9) absorption near 1530 nm was measured by recording the transmission of CW laser after 10 m gain fiber filled with 0.3 mbar acetylene gas. A thermal power meter (Ophir 3A-SH) was used to measure the laser power. The tunable laser diode  (ID Photonics GMBH, CoBrite DX1, linewidth <100 kHz, maximum output power ~40 mW) was used as a source after amplification.
All the pump powers shown in Figs 4 (a) and 6 were measured after the dichroic mirror with a thermal power meter (Ophir 3A-SH).
Stability of laser output as a function of time in the fig 5 (b), was measured at 10 Hz sampling rate over more than one hour. A high gain detector (Thorlab PDA20H-EC) was used to directly measure the lasing power.
The mode profile (inset Fig 5 (b)), was measured by using a two-dimensional scan with a short piece of feedback fiber (less than 3 m) across the output beam. The fiber was mounted on a 2D scanning translation device and connected with a high gain detector (Thorlab PDA20H-EC). The whole scan was controlled by LABView software. 
Time-dependent (Figs 8 (a & c)) measurements used a high speed HgCdTe detector (Vigo PVI-3.4-1×1- TO39-NO WINDOW-35, 1ns rise time) for 3.1 µm and a high speed InGaAs detector (Thorlabs DET01CFC) for 1.5 µm.A 350 MHz digital oscilloscope (Agilent InfiniiVision DSO-X-3032A) and 6 GHz spectrum analyzer (Agilent CSA Spectrum Analyzer) were used for measurements
DOI: 10.15125/bath-00102
title: Dataset for "Oxidation of GaN : An ab initio thermodynamic approach"

description: Supporting data and MATLAB code for thermodynamic models of oxygen defect formation in GaN.
description: Ab initio calculations detailed in open-access publication: 
Jackson, A. J. & Walsh, A. Oxidation of GaN: An ab initio thermodynamic approach. Phys. Rev. B 88, 165201 (2013).

MATLAB code written by AJJ

Thermochemical data from literature is cited where it appears in the code, and in the paper.
description: Further relevant documentation may be found in the following resources.

   Jackson, A., and Walsh, A.,  2013.   Oxidation of GaN: An ab initio thermodynamic approach.    Physical Review B, 88(16).   Available from: https://researchportal.bath.ac.uk/en/publications/oxidation-of-gan-an-ab-initio-thermodynamic-approach.