cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.gr93t/4
title: Concatenation_of_all_763_ COS_alignments

description: Concatenated alignment file.
DOI: 10.5061/dryad.nh3d2/8
title: blueRegions

description: The matlab script used to identify the percentage of the lizards trunks that are covered by the blue patches. The program Matlab (Mathworks Inc) is required for running this script. Read the instructions in RunemarkDataDescription.txt and on the command line in the Matlab window.
DOI: 10.5061/dryad.qt48h/1
title: Marjanovic_&_Laurin_App_1

description: Methods and sources used to compile the main phylogeny (Figs. 3–7) and to determine the stratigraphic distribution of various lissamphibian species, and of the fossiliferous localities.
DOI: 10.5061/dryad.qt48h/10
title: Marjanovic_&_Laurin_App_10

description: Lissamphibian biodiversity through time.
DOI: 10.5061/dryad.qt48h/14
title: Marjanovic_&_Laurin_App_14

description: Divergence dates calculated by penalized maximum likelihood using r8s 1.71 (TN algorithm) under different assumptions.
DOI: 10.5061/dryad.qt48h/2
title: Marjanovic_&_Laurin_App_2

description: Timetree in pdf format.
DOI: 10.5061/dryad.qt48h/4
title: Marjanovic_&_Laurin_App_4

description: Estimated date of appearance of selected taxa in the supertree under various assumptions of branch lengths.
DOI: 10.5061/dryad.qt48h/5
title: Marjanovic_&_Laurin_App_5

description: Estimated date of appearance of selected taxa under various random resolutions of the polytomies in the supertree.
DOI: 10.5061/dryad.qt48h/8
title: Marjanovic_&_Laurin_App_8
DOI: 10.5061/dryad.qt48h/9
title: Marjanovic_&_Laurin_App_9

description: Correlation and discrepancy between the predicted number of fossiliferous lissamphibian localities according to various models and the observed number of localities.
DOI: 10.5061/dryad.r55fb/1
title: Gecko SNP data

description: Empirical SNP data for the Hemidactylus fasciatus complex. The zipped folder contains xml files for conducting species delimitation using the alternative models described in the paper.
DOI: 10.5061/dryad.r55fb/2
title: Simulation files

description: The zipped folder contains the simulated SNP data in xml format for conducting species delimitation analysis.
DOI: 10.5061/dryad.tk043/6
title: Adams_etal_hyper-cryptic_olidus_Syst_Biol_Supplementary_Figures_R1

description: Powerpoint file containing Supplemental Figures 1-6. Each figure is individually captioned.
DOI: 10.5061/dryad.tk043/7
title: Adams_etal_hyper-crpytic_olidus_Syst_Biol_Supplementary_Text

description: Supplementary Text 1 and 2, providing additional details of the morphological analyses undertaken.
DOI: 10.5061/dryad.v43b8/3
title: Hourly temperatures from high altitude site at Volcan Irazu, Costa Rica

description: 9°58'32.11"N  83°51'9.32"W, 3398 m
DOI: 10.5061/dryad.v43b8/4
title: Hourly temperatures from replacement site at Volcan Irazu, Costa Rica

description: 9°57'41.07"N     83°50'44.21"W, 2950 m
DOI: 10.5061/dryad.v43b8/5
title: Hourly temperatures from low altitude site at Volcan Irazu, Costa Rica

description: 10° 6'20.37"N  83°58'31.83"W, 1100 m
DOI: 10.5061/dryad.v43b8/6
title: Interspecific aggression trials
DOI: 10.5061/dryad.v43b8/7
title: Hourly temperatures on plots of reciprocal removal experiment at Volcan Irazu, Costa Rica

description: Plot ID: 1 thru 6, Species: T= S. teguina, X= S. xerampelinus, Treatment: C= Control, R = Removal
DOI: 10.5061/dryad.v43b8/8
title: Reciprocal removal experiment at Volcan Irazu, Costa Rica
DOI: 10.5061/dryad.v43b8/9
title: Numbers removed and colonized during reciprocal removal experiment at Volcan Irazu, Costa Rica

description: Number of S. teguina and S. xerampelinus that were removed and/or colonized plots during reciprocal removal experiment
DOI: 10.5061/dryad.v90p5/1
title: C. capreolus
DOI: 10.5061/dryad.vb8r7/2
title: Miami versus Eastern CrossInfection

description: Data from laboratory infections with monarchs and parasites from the eastern North American and Hawaiian populations. Additional details can be found in the ReadMe file.
DOI: 10.5061/dryad.0674n/1
title: Appendix 1 - S. paradoxus Variation Table

description: pSNP and SNP frequencies for SGRP sequence reads of 26 S. paradoxus strains and the S288c S. cerevisiae strain compared with the rDNA consensus sequence of the CBS432 S. paradoxus type strain.
DOI: 10.5061/dryad.172s5/2
title: Trail_1_data
DOI: 10.5061/dryad.1775k/10
title: MAE predictions for cell lines

description: Chromatin-based predictions of monoallelic expression in ENCODE cell lines in Open Office Format
DOI: 10.5061/dryad.1775k/11
title: Result of whole RNA-seq on clones of GM12878 lymphoblastoid clones DF1 and DF2

description: Result of whole RNA-seq on clones of GM12878 lymphoblastoid clones DF1 and DF2 in Open Office Format
DOI: 10.5061/dryad.1805c973/1
title: Whitehorn, O'Connor, Wackers, Goulson (2012) Data from 'Neonicotinoid pesticide reduces bumblebee colony growth and queen production'.csv
DOI: 10.5061/dryad.22pq8/1
title: Trade_off_and_bottlenecks

description: Data for the levels of resistance, fitness costs, levels of cross-resistance and number of observed generations of evolution for each population used in this study.
DOI: 10.5061/dryad.23g44/4
title: *Hemir_paleo
DOI: 10.5061/dryad.2ff80/1
title: data file(Evolution-12-0887)

description: These are the original data for the figures in the Evolution paper 12-0887.
DOI: 10.5061/dryad.369q9/1
title: Collection sites and sample sizes

description: Summary table of field sites with latitude (lat_dec) and longitude (lon_dec), sorting order for Table 1 and Figure 1c (sort), and sample sizes for Joshua tree genetics (JotrGen) and phenotype measurements (JotrPhen) and moth genetics (MothGen) and phenotypes (MothPhen).
DOI: 10.5061/dryad.369q9/4
title: Tegeticula antithetica genotypes

description: Diploid genotypes at nine microsatellite loci for Tegeticula antithetica, given as motif repeat counts.
DOI: 10.5061/dryad.36v4b/1
title: Trait Measurements

description: Trait measurements for 33 species/morphs of Iochromineae (32 distinct species, with two color morphs for Iochroma umbellatum).  Includes five morphological measurements (pedicel length, petiole length, leaf length, berry width, and tube length) as well as spectral measurements of flower color summarized as four PCA axes and as coordinates in hummingbird color space (3D; X,Y,Z) and bee color space (2D; A,B)
DOI: 10.5061/dryad.47hc8/3
title: Etosha lion pride relationships

description: This file contains field data collection sheets received from Olivia Forge. Data includes past and current pride members and possible relationships based on field observations.
DOI: 10.5061/dryad.528td/1
title: Leaf mass, leaf area, petiole width, and leaf physiognomic measurements of globally distributed ferns (Appendices S1a, S1b)
DOI: 10.5061/dryad.528td/2
title: Fern images from Baylor University Herbarium

description: Zipped folder with images of ferns from Baylor Herbarium.  Folder also includes ReadMe file and image key.
DOI: 10.5061/dryad.528td/3
title: Fern images from Queensland Herbarium

description: Zipped folder with images of ferns from Queensland Herbarium.  Folder also includes ReadMe file and image key.
DOI: 10.5061/dryad.528td/4
title: Fern images from Te Papa Herbarium

description: Zipped folder with images of ferns from Te Papa Herbarium at the Museum of New Zealand Te Papa Tongarewa.  Folder also includes ReadMe file and image key.
DOI: 10.5061/dryad.528td/5
title: Fern images from US National Herbarium (part 1)

description: Zipped folder with images of ferns from USNH. Folder also includes ReadMe file and image key.
DOI: 10.5061/dryad.528td/6
title: Fern images from US National Herbarium (part 2)

description: Zipped folder with images of ferns from USNH. Folder also includes ReadMe file and image key.
DOI: 10.5061/dryad.653c9/2
title: lake data
DOI: 10.5061/dryad.653c9/3
title: raw zooplankton data

description: Data for zooplankton taxa in counts per liter by Lake. Date and depth sampled are shown. Dates where only the year is gven were sampled  at sometime within the sampling range for the other lakes.
DOI: 10.5061/dryad.67jg8/4
title: MPMI-23-4-0473E4

description: Provides experimental design and quantitative trait loci analysis details.
DOI: 10.5061/dryad.6c44q/13
title: Graph_5

description: Graph obtained using data archived in file DataForFigures_5&6.txt. Explanation on the meaning of the graph can be found in the readMe associated to that file.
DOI: 10.5061/dryad.6h822/24
title: Figure_5_Tank19(B19B)

description: Paternity analysis for Tank 19 (B19B). Study Day indicates the day on which each embryo analysed was spawned. The first 3 rows in the table are the parent fish and below that are the 20 selected offspring. The microsatellite loci used for analysis are listed along the top of the table and corresponding allelles are detailed below.
DOI: 10.5061/dryad.6h822/25
title: Figure_6_11KT

description: Data shows amount of plasma 11 ketotestosterone (ng/mL) measured in male fish, either inbred or outbred, or from the control or exposed treatment group, as indicated. The proportion of offspring sired by each male fish is also indicated (from spawning groups containing an outbred female only, as described in the associated manuscript).
DOI: 10.5061/dryad.6s021/1
title: Age_CHCs_Etges&Oliveira

description: cuticular hydrocarbon amounts for adult D. mojavensis males and females sampled at different ages
DOI: 10.5061/dryad.6s241/3
title: final size-corrected morphology color and lightness of pairs

description: Size-correct morphological traits, PC1-3 of color measurements, and PC1-2 for lightness of mated pairs. This dataset used for canonical correlation analysis between males and females.
DOI: 10.5061/dryad.6v0c1/1
title: data-JEB
DOI: 10.5061/dryad.77hn0/1
title: Heredity Dryad averaged data submission

description: This data is line averages for several traits measured for this manuscript. It was used for all the analysis described in the manuscript apart from the relationship between female size and number of eggs laid by females.
DOI: 10.5061/dryad.7m6kg/77
title: 3D model of Nectocaris (large and small morphs)

description: A Blender model of the large and small morphs of Nectocaris, to scale, constructed in Blender, using fossil material to constrain shape and proportions.
DOI: 10.5061/dryad.bm676/12
title: GIS_Spring_Precip_CV

description: Ascii file for species distribution modeling, locations in UTM NAD 1927, Zone 11 North, cellsize = 100 m. This file contains estimates of the coefficient of variation of cumulative spring (Feb-June) precipitation for the period 2005-2009, using kriging to interpolate between weather stations.
DOI: 10.5061/dryad.bm676/13
title: GIS_Spring_Precip_mean

description: Ascii file for species distribution modeling, locations in UTM NAD 1927, Zone 11 North, cellsize = 100 m. This file contains estimates of the mean of cumulative spring (Feb-June) precipitation for the period 2005-2009, using kriging to interpolate between weather stations.
DOI: 10.5061/dryad.bm676/16
title: GIS_Winter_Precip_mean

description: Ascii file for species distribution modeling, locations in UTM NAD 1927, Zone 11 North, cellsize = 100 m. This file contains estimates of the mean of cumulative winter (Nov-Feb) precipitation for the period 2005-2009, using kriging to interpolate between weather stations.
DOI: 10.5061/dryad.c0g2t/2
title: Sound files and results for the Mount Britton site

description: The zip file contains 2 folders: 1) Mount_Britton_ACI_values with 3 files: readme.txt, heard.txt - ACI values for the site when the recordings were listened to only, filtered.txt - ACI values for the site when the recordings were analyzed with computer software and analyzed. 2) Mount_Britton_wav with 16 files: readme.htm, 15 one-minute recordings in wav format (mono, 16-bit, 48 kHz).
DOI: 10.5061/dryad.d380g/10
title: Linkage_All

description: Disparity metric outputs following linkage data removal for all taxa datasets.
DOI: 10.5061/dryad.d380g/11
title: Random_All

description: Disparity metric outputs following random data removal for all taxa datasets.
DOI: 10.5061/dryad.d380g/12
title: Disparity_TTest

description: T-test results for mammals and pterosaurs for all disparity metrics. The test examines disparity differences between adjacent time bins.
DOI: 10.5061/dryad.d380g/13
title: FunctionDocumentation

description: Instructions on how to use the R scripts. Contains detailed information on each function used by correction factor.
DOI: 10.5061/dryad.d380g/6
title: LuoMatrixExtant

description: Example extant dataset used in the data removal component of the study.
DOI: 10.5061/dryad.d380g/7
title: LuoMatrixExtinct

description: Example extinct dataset used in the linkage data removal component of the study.
DOI: 10.5061/dryad.d380g/8
title: LuoMatrixExtinctRandom

description: Example extinct dataset used in the random data removal component of the study.
DOI: 10.5061/dryad.d380g/9
title: PCO_All

description: Differences between original and 'data removed' ordination spaces for all taxa datasets.
DOI: 10.5061/dryad.d6r22/1
title: Day3_data_dryad

description: Four different protozoa species were obtained from the water-filled leaves of natural pitcher plants in the Apalachicola Forest.  Each species was rapidly isolated from leaves that were 2, 7, or 12 weeks old, then grown in monoculture and all possible species pair combinations in a growth chamber.  The data here represent cell counts after three days of growth from three replications of each treatment.  Species abbreviations can be found in the publication. For each line of data, "week" is the age of the pitcher",  "responder" is the species whose abundance was determined, "effecter" was the species it was growth with,"competition" is the log(cell count per 0.1 mL) of the responder species in two-species competition, "mono" is the log(cell count per 0.1 mL) of the responder species in monoculture, and CI is a "competitive index" representing how much the growth of the effecter species is suppressed by the presence of the effecter species.
DOI: 10.5061/dryad.d96q7/1
title: 210LocusAFLP_with_outgroup
DOI: 10.5061/dryad.d96q7/2
title: 821AFLP_MtDNA_combined_4part
DOI: 10.5061/dryad.d96q7/3
title: 821LocusAFLP_with_outgroup
DOI: 10.5061/dryad.d96q7/4
title: georeferenced_climate

description: Climate data extracted from BIOCLIM layers using geo-referenced locality data
DOI: 10.5061/dryad.dc56n/10
title: Puccinellia maritima microsatellite dataset

description: Individuals are in row, microsatellite alleles in columns. Microsatellite alleles are coded as present or absent (1/0) in each individuals. NA for missing data.
DOI: 10.5061/dryad.dc56n/2
title: Ordination (NMDS) script

description: R script permitting to compute and plot a Nonmetric Multidimensional Scaling (NMDS) ordination
DOI: 10.5061/dryad.dc56n/3
title: Puccinellia maritima population assignment to DAPC regions (K=4)

description: Puccinellia maritima input file for the implementation of the AMOVA
DOI: 10.5061/dryad.dc56n/4
title: Puccinellia maritima population assignment to DAPC regions (K=5)

description: Puccinellia maritima input file for the implementation of the AMOVA
DOI: 10.5061/dryad.dc56n/5
title: Puccinellia maritima population assignment to DAPC regions (K=6)

description: Puccinellia maritima input file for the implementation of the AMOVA
DOI: 10.5061/dryad.dc56n/6
title: Puccinellia maritima AMOVA script

description: R script permitting to compute AMOVA for Puccinellia maritima
DOI: 10.5061/dryad.dc56n/7
title: Puccinellia maritima samples assignment to population of origin

description: Puccinellia maritima input file for the implementation of the AMOVA
DOI: 10.5061/dryad.dc56n/8
title: Puccinellia maritima DAPC script

description: R script permitting to compute DAPC for Puccinellia maritima
DOI: 10.5061/dryad.dc56n/9
title: Coastal distance between Puccinellia maritima populations

description: Matrix showing coastal distance between Puccinellia maritima populations
DOI: 10.5061/dryad.f058c/4
title: Pop1

description: Standard Flowgram Format (sff) file that contains NGS reads for 16S and Cyt b amplicons from population-pool 1. Individuals that belong to population-pool 1 are listed in Table 1.
DOI: 10.5061/dryad.fk0b9/1
title: RWA worldwide populations' microsatellite and sequences data
DOI: 10.5061/dryad.fk0b9/2
title: Dryad---microsatellite update

description: Add haplotype number for each individual
DOI: 10.5061/dryad.m8q8h/1
title: Stomatopod biomechanical data

description: Using 196 specimens from 36 stomatopod species we measured 3 biomechanical metrics related to the raptorial strike. These include the minimum Kinematic Transmission (KT) during strikes, the Mechanical Advantage (MA) of the propodus lever system and the Reach of the appendage defined as the distance that the distal two segments of the appendage (propodus and dactyl oriented at 90° to each other) extend beyond the body during prey capture/acquisition. In addition, we measured the length of the carapace to act as a proxy for body size. The Reach measure was divided by this size measure to create a ‘size-corrected’ Reach metric to use in figures.
DOI: 10.5061/dryad.nc4k0/1
title: murcianus_cluster_dextral

description: stl file of a Pseudofurnishius murcianus dextral P1 element from a fused pair of elements from a single individual.
DOI: 10.5061/dryad.nc4k0/2
title: murcianus_cluster_sinistral

description: stl file of a Pseudofurnishius murcianus sinistral P1 element from a fused pair of elements from a single individual.
DOI: 10.5061/dryad.q5570/4
title: Hermodice specimen information 1-9-2013
DOI: 10.5061/dryad.qt48h/3
title: Marjanovic_&_Laurin_App_3

description: Comparison between the estimated minimal age of various taxa under our supertree and under the phylogeny of Frost et al. (2006).
DOI: 10.5061/dryad.rh0mv/1
title: SNP_genotype

description: Genotype calls from 23379 SNPs
DOI: 10.5061/dryad.sn5r5/1
title: data, scripts, and supporting information
DOI: 10.5061/dryad.t6k57/1
title: Grinsted et al. 2014 Evolution

description: Egg data from social and subsocial spiders
DOI: 10.5061/dryad.vb8r7/1
title: Hawaii versus Eastern Cross Infection

description: Data from laboratory infections with monarchs and parasites from the eastern North American and Hawaiian populations. Additional details can be found in the ReadMe file.
DOI: 10.5061/dryad.vk820/3
title: data

description: Data on the unsteady swimming performance, The steady swimming performance and metabolic parameters, and the morphology of 19 fish species.
DOI: 10.5061/dryad.vq542/2
title: Analysis of dispersal distance in relation to coloration

description: Recruit ring= Identity of the individual that dispersed; dispersal distance: distance (m) between the nest where the recruit was reared and the nest where it bred for the first time; Year = year when born; Brood ID: identity of the nest where the recruit was raised; Sex=Sex of the recruit; Treatment: brood size manipulation; Father and mother color: 1 for dark melanin to 5 for light melanic
DOI: 10.5061/dryad.0674n/10
title: Updated Appendix 3 - Phylogenetic Networks of S. paradoxus and S. cerevisiae Strains

description: Both a) and b) show an enlargement of the main population structure in the network, with the small grey inset showing the whole network including the outgroup. a) The S. paradoxus network shows a clear separation of each geographic population. b) The S. cerevisiae network shows a more complex network structure, consistent with our knowledge of this population.
DOI: 10.5061/dryad.0674n/2
title: Appendix 2 - S. cerevisiae Variation Table

description: pSNP and SNP frequencies for SGRP sequence reads of 34 S. cerevisiae strains and the Q32.3 S. paradoxus strain compared with the rDNA consensus sequence of the S288c S. cerevisiae type strain.
DOI: 10.5061/dryad.0674n/3
title: Appendix 3 - Phylogenetic Networks of S. paradoxus and S. cerevisiae Strains

description: Both a) and b) show an enlargement of the main population structure in the network, with the small boxed inset showing the whole network including the outgroup. a) The S. paradoxus network shows a clear separation of each geographic population. b) The S. cerevisiae network shows a more complex network structure, consistent with our knowledge of this population.
DOI: 10.5061/dryad.0674n/4
title: Appendix 4 - Bar Charts of the pSNP Percentage Occupancy in S. cerevisiae by Population Type

description: a) Bar chart of the S. cerevisiae structured strains, with number of pSNPs against the pSNP occupancy. The boxed section highlights pSNPs with occupancies greater than 10% and less than 90%. The Malaysian, North American and West African strains have very few pSNPs within this boxed area, and these are denoted as structured clean strains. Those strains with a number of pSNPs within this boxed area show a degree of mosaicism, and we classify these strains as being structured mosaic strains. 
b) Bar chart of S. cerevisiae mosaic strains, where there are a large number of pSNPs within the 10% to 90% occupancy range.
DOI: 10.5061/dryad.0674n/5
title: S. paradoxus CE distance matrix

description: Cavalli-Sforza and Edwards rDNA-based distance matrix for 26 S. paradoxus strains plus S. cerevisiae strain S288c
DOI: 10.5061/dryad.0674n/6
title: S. cerevisiae CE distance matrix

description: Cavalli-Sforza and Edwards rDNA-based distance matrix for 34 S. cerevisiae strains plus S. paradoxus strain Q32.3
DOI: 10.5061/dryad.0674n/7
title: S. paradoxus NJ tree

description: Neighbor-Joining phylogenetic tree derived from the S. paradoxus CE distance matrix
DOI: 10.5061/dryad.0674n/8
title: S. cerevisiae NJ tree

description: Neighbor-Joining phylogenetic tree derived from the S. cerevisiae CE distance matrix
DOI: 10.5061/dryad.0674n/9
title: Perl script for coverage/copy number estimation

description: Perl script to calculate the rDNA unit coverage from a sequence read dataset and to estimate the number of rDNA units (copy number) in an rDNA tandem array.
DOI: 10.5061/dryad.1hf24/1
title: Matlab scripts

description: This zip file contains two matlab scripts used to simulate equilibrium Fst values in an Island Model with anisotropic migration rates.
DOI: 10.5061/dryad.2rg92p5v/1
title: Supplementary Figure 1: Neighbour-Joining tree on complete European dataset of Agabini diving-beetles

description: Produced from PAUP with a Kimura-2-Parameter model
DOI: 10.5061/dryad.2sk59/2
title: DartGenot

description: Genotype data for DArT markers regarding 280 lines in the Nebraska Wheat Breeding Program.
DOI: 10.5061/dryad.3pf37/3
title: del12

description: Nexus file containing sequences obtained for the anonymous locus Del_12 from Delphinus delphis, Delphinus capensis and Delphinus tropicalis. Samples were collected from stranded or live animals using biopsies in the Atlantic, Pacific and Indian Oceans.
DOI: 10.5061/dryad.3sk8p/1
title: Part 1 of the sequence data for Table4.

description: Paired end Illumina GAIIx sequence data in the format of qseq. This is one of the 4 datasets for Table 4.
DOI: 10.5061/dryad.3sk8p/2
title: Part 2 of the sequence data for Table4.

description: Paired end Illumina GAIIx sequence data in the format of qseq. This is the 2nd of the 4 datasets for Table 4.
DOI: 10.5061/dryad.3sk8p/3
title: Part 3 of the sequence data for Table4.

description: Paired end Illumina GAIIx sequence data in the format of qseq. This is the 3rd of the 4 datasets for Table 4.
DOI: 10.5061/dryad.3sk8p/4
title: Part 4 of the sequence data for Table4.

description: Paired end Illumina GAIIx sequence data in the format of qseq. This is the 4th of the 4 datasets for Table 4.
DOI: 10.5061/dryad.3sk8p/5
title: Part 1 of the sequence data for Table2.

description: Paired end Illumina GAIIx sequence data in the format of qseq. This is the 1st of the 2 datasets for Table 2.
DOI: 10.5061/dryad.49m52/1
title: Badgley Finarelli.TablesS1-S11

description: Data about species occurrences were downloaded from NeoMAP (MIOMAP and FAUNMAP). The supplementary tables in this file represent the processed raw data (species occurrences binned into 1-myr intervals) and various diversity metrics calculated from the raw data. Methods in the paper explain how the metrics were calculated.