cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.eut5qx
title: Occurrence Download

description: A dataset containing 44720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-10.05469 35.59657,-4.85596 35.6001,5.0625 35.59657,5.0625 44.08127,-10.05469 44.08127,-10.05469 35.59657))",
 {
 "or" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "DatasetKey is Anillamiento SEO_Bird ringing",
 "DatasetKey is Aranzadi Ringing Scheme (bird ring-recovery data)",
 "DatasetKey is EDP Foz Tua: Terrestrial Birds, Spring (point counts) - Ecological Monitoring Program [2011-2017]",
 "DatasetKey is Data collected on citizen science web portal www.ornitho.cat",
 "DatasetKey is EDP Foz Tua: Terrestrial Birds, Winter (point counts) - Ecological Monitoring Program [2011-2017]",
 "DatasetKey is naturgucker",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is EDP Foz Tua: Terrestrial Birds (transects) - Ecological Monitoring Program [2009-2012]"
 ]
 },
 "TaxonKey is Estrilda astrild (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 44720 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072015-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5upj2p
title: Occurrence Download

description: A dataset containing 78866 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Gentiana lutea L., Gentiana pannonica Scop.)"
 ]
}

 The dataset includes 78866 records from 306 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009507-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mugpbc
title: Occurrence Download

description: A dataset containing 15816 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Bidens pilosa L."
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 15816 records from 338 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011507-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.56pbe9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Curaçao",
 "DatasetKey is Mammalogy Collection - Royal Ontario Museum",
 "TaxonKey is one of (Glossophaga longirostris elongata Miller, 1900, Glossophaga longirostris major Goodwin, 1958, Glossophaga longirostris campestris Webster & Handley, 1986, Glossophaga longirostris Miller, 1898, Glossophaga longirostris reclusa Webster & Handley, 1986, Glossophaga longirostris maricelae Soriano, Fariñas & Naranjo, 2000, Glossophaga longirostris longirostris, Glossophaga longirostris rostrata Miller, 1913)"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008343-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.swdrkr
title: Occurrence Download

description: A dataset containing 895780 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is China",
 {
 "or" : [
 "Issue is Coordinate rounded",
 "Issue is Geodetic datum assumed WGS84"
 ]
 },
 "Year 1980-2020",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 895780 records from 929 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066386-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.my6tee
title: Occurrence Download

description: A dataset containing 3046 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipodillus Lataste, 1881"
 ]
}

 The dataset includes 3046 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009509-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ovoycn
title: Occurrence Download

description: A dataset containing 56746 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "Year 1960-2019",
 "HasCoordinate is true",
 "TaxonKey is Anthocharis cardamines (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 56746 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010640-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68c25x
title: Occurrence Download

description: A dataset containing 281 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon herrerai Stejneger, 1925"
 ]
}

 The dataset includes 281 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039880-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y24y7e
title: Occurrence Download

description: A dataset containing 144499 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetrao urogallus Linnaeus, 1758"
 ]
}

 The dataset includes 144499 records from 217 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315416-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uf6tfb
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Austrofundulus leohoignei Hrbek, Taphorn & Thomerson, 2005"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044237-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtcqy7
title: Occurrence Download

description: A dataset containing 329 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lolium perenne subsp. multiflorum (Lam.) Husn."
 ]
}

 The dataset includes 329 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000802-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ujnfrp
title: Occurrence Download

description: A dataset containing 5547576 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 5547576 records from 3059 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254843-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh8eky
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Maconellicoccus hirsutus"
 ]
}

 The dataset includes 162 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024973-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8my328
title: Occurrence Download

description: A dataset containing 2996 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-30 81, 50 81, 50 12, -30 12, -30 81))",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Living Specimen, Occurrence evidence)",
 "TaxonKey is one of (Golfingia vulgaris)"
 ]
}

 The dataset includes 2996 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024972-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8sxaj7
title: Occurrence Download

description: A dataset containing 25261 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is IDN.22_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 25261 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118323-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uvt8ea
title: Occurrence Download

description: A dataset containing 1020271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "TaxonKey is Anura"
 ]
}

 The dataset includes 1020271 records from 345 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118322-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13691409
title: SAXS data of bipyramidal LiYF4 nanoparticles

description: SAXS data of bipyramidal LiYF4 nanoparticles synthesized by the Federal Institute for Materials Research and Testing (BAM) and measured by the Physikalisch-Technische Bundesanstalt (PTB) at the synchrotron facility Bessy II, Berlin, Germany.

Partial project funding by the European Metrology Partnership (EMP; project 22HLT04 MetrINo).

 

Remark:

The measurement data (“merged”) were obtained by merging two independent SAXS and WAXS measurements, which overlap in q, using the pyFAI software package. The values of q are given in 1/nm, the values of I and Ierr (stdv) in arbitrary units (a.u.).The measured data (“SI units”) were obtained by averaging SAXS curves along the y-axis of each capillary with homogeneous thickness (radiation length). The values of q are given in 1/nm, the values of I and Ierr (stdv) in 1/m.
DOI: 10.5281/zenodo.13691410
title: SAXS data of bipyramidal LiYF4 nanoparticles

description: SAXS data of bipyramidal LiYF4 nanoparticles synthesized by the Federal Institute for Materials Research and Testing (BAM) and measured by the Physikalisch-Technische Bundesanstalt (PTB) at the synchrotron facility Bessy II, Berlin, Germany.

Partial project funding by the European Metrology Partnership (EMP; project 22HLT04 MetrINo).

 

Remark:

The measurement data (“merged”) were obtained by merging two independent SAXS and WAXS measurements, which overlap in q, using the pyFAI software package. The values of q are given in 1/nm, the values of I and Ierr (stdv) in arbitrary units (a.u.).The measured data (“SI units”) were obtained by averaging SAXS curves along the y-axis of each capillary with homogeneous thickness (radiation length). The values of q are given in 1/nm, the values of I and Ierr (stdv) in 1/m.
DOI: 10.5281/zenodo.13625527
title: Glutamine sensing licenses cholesterol synthesis.

description: The uploaded metabolomic dataset contains liquid-chromatography-mass spectrometry (LC-MS) data associated to a publication of Bruna Martins Garcia et al. from the Lena Pernas laboratory.

The title olf the article is: Glutamine sensing licenses cholesterol synthesis.

This article is to be published 2024 in the EMBO Journal-

Abstract of the article: The mevalonate pathway produces essential metabolites such as cholesterol. Although this pathway is negatively regulated by metabolic intermediates, little is known of the metabolites that positively regulate its activity. We found that the amino acid glutamine is required to activate the mevalonate pathway. Glutamine starvation inhibited cholesterol synthesis and blocked transcription of the mevalonate pathway—even in the presence of glutamine derivatives such as ammonia and a-ketoglutarate. We pinpointed this glutamine-dependent effect to a loss in the ER-to-Golgi trafficking of SCAP that licenses the activation of SREBP2, the major transcriptional regulator of cholesterol synthesis. Both enforced Golgi-to-ER retro-translocation and the expression of a nuclear SREBP2 rescued mevalonate pathway activity during glutamine starvation. In a cell model of impaired mitochondrial respiration in which glutamine uptake is enhanced, SREBP2 activation and cellular cholesterol were increased. Thus, the mevalonate pathway senses and is activated by glutamine at a previously uncharacterized step, and the modulation of glutamine synthesis may be a strategy to regulate cholesterol levels in pathophysiological conditions. 

The associated data in this repository is grouped according to the figures in the the above mentioned article. Each zip folder contains the LC-MS raw files and one or more Excel tables describing the parameters (retention time, observed molecular weight, detected error to expected molecular weight, signal-to-noise and the integrated raw values of the detected compounds. Material and Method utilized for the analysis of the diverse samples is available in the context of the above mentioned article.
DOI: 10.5281/zenodo.13625528
title: Glutamine sensing licenses cholesterol synthesis.

description: The uploaded metabolomic dataset contains liquid-chromatography-mass spectrometry (LC-MS) data associated to a publication of Bruna Martins Garcia et al. from the Lena Pernas laboratory.

The title olf the article is: Glutamine sensing licenses cholesterol synthesis.

This article is to be published 2024 in the EMBO Journal-

Abstract of the article: The mevalonate pathway produces essential metabolites such as cholesterol. Although this pathway is negatively regulated by metabolic intermediates, little is known of the metabolites that positively regulate its activity. We found that the amino acid glutamine is required to activate the mevalonate pathway. Glutamine starvation inhibited cholesterol synthesis and blocked transcription of the mevalonate pathway—even in the presence of glutamine derivatives such as ammonia and a-ketoglutarate. We pinpointed this glutamine-dependent effect to a loss in the ER-to-Golgi trafficking of SCAP that licenses the activation of SREBP2, the major transcriptional regulator of cholesterol synthesis. Both enforced Golgi-to-ER retro-translocation and the expression of a nuclear SREBP2 rescued mevalonate pathway activity during glutamine starvation. In a cell model of impaired mitochondrial respiration in which glutamine uptake is enhanced, SREBP2 activation and cellular cholesterol were increased. Thus, the mevalonate pathway senses and is activated by glutamine at a previously uncharacterized step, and the modulation of glutamine synthesis may be a strategy to regulate cholesterol levels in pathophysiological conditions. 

The associated data in this repository is grouped according to the figures in the the above mentioned article. Each zip folder contains the LC-MS raw files and one or more Excel tables describing the parameters (retention time, observed molecular weight, detected error to expected molecular weight, signal-to-noise and the integrated raw values of the detected compounds. Material and Method utilized for the analysis of the diverse samples is available in the context of the above mentioned article.
DOI: 10.6084/m9.figshare.26953822
title: CSO code and scripts

description: Food security, particularly soybean, is a significant concern in China due to reliance on imports. This study aims to optimize crop rotations and diet to enhance soybean self-sufficiency. A Cropping System Optimization Model (CSOM) and a Diet-Cropping System Optimization Model (DCSOM) were constructed in order to optimize the crop rotation strategies in 1.7 million cultivated land grids in China. Adjusting crop rotations could produce 89.39 million tons of soybean, raising self-sufficiency rate from 14.2% to 77.4%. On this basis, diet optimization could further reduce soybean demand by 29.33 million tons, thus achieving the soybean self-sufficiency in China. Increased domestic production shifts the environmental footprint from importing countries to China, causing a net global environmental footprint increase, though limited. Additionally, it would reduce greenhouse gas emissions and land use within China, despite higher global nitrogen, phosphorus, and water usage.
DOI: 10.6084/m9.figshare.26953822.v1
title: CSO code and scripts

description: Food security, particularly soybean, is a significant concern in China due to reliance on imports. This study aims to optimize crop rotations and diet to enhance soybean self-sufficiency. A Cropping System Optimization Model (CSOM) and a Diet-Cropping System Optimization Model (DCSOM) were constructed in order to optimize the crop rotation strategies in 1.7 million cultivated land grids in China. Adjusting crop rotations could produce 89.39 million tons of soybean, raising self-sufficiency rate from 14.2% to 77.4%. On this basis, diet optimization could further reduce soybean demand by 29.33 million tons, thus achieving the soybean self-sufficiency in China. Increased domestic production shifts the environmental footprint from importing countries to China, causing a net global environmental footprint increase, though limited. Additionally, it would reduce greenhouse gas emissions and land use within China, despite higher global nitrogen, phosphorus, and water usage.
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000596
title: distortionless enhancement with polarization transfer (DEPT) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000601
title: heteronuclear multiple bond coherence (HMBC) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for heteronuclear multiple bond coherence (HMBC)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000596.1
title: distortionless enhancement with polarization transfer (DEPT) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for distortionless enhancement with polarization transfer (DEPT)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000599
title: correlation spectroscopy (COSY) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for correlation spectroscopy (COSY)
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n.1
title: hepta-1,6-diyne
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: This is a physical chemical entity[CHEBI_24431] associated with a molecule[CHEBI_25367].
 The molecule[CHEBI_25367] can be described by the following structural desciptors[cheminf_000085]:
 InChI descriptor[cheminf_000113]: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2, and canonical SMILES descriptor[cheminf_000007]: C#CCCCC#C, and by the IUPAC name[cheminf_000107]: hepta-1,6-diyne.
 
 The physical chemical entity[CHEBI_24431] has a component solvent[CHEBI_46787] which is described by the canonical SMILES descriptor[cheminf_000007]:
 
 The physical chemical entity[CHEBI_24431] has the following Sample ID as registered in the research data repository chemotion (www.chemotion-repository.net, https://doi.org/10.25504/FAIRsharing.iagXcR): CRS-45277

 The physical chemical entity[CHEBI_24431] can be described by the physical descriptors [CHEMINF_000025]:
 Melting point descriptor[CHEMINF_000256]: 
 Boiling point descriptor[CHEMINF_000257]: 
 Refractive index descriptor[CHEMINF_000253]:

 The physical chemical entity[CHEBI_24431] can be further described by the following assays[OBI:0000070][CHMO:0001133]:
 
 CHMO:0000595 | 13C nuclear magnetic resonance spectroscopy (13C NMR)
 
 CHMO:0000593 | 1H nuclear magnetic resonance spectroscopy (1H NMR)
 
 CHMO:0000604 | heteronuclear single quantum coherence (HSQC)
 
 CHMO:0000601 | heteronuclear multiple bond coherence (HMBC)
 
 CHMO:0000599 | correlation spectroscopy (COSY)
 
 CHMO:0000596 | distortionless enhancement with polarization transfer (DEPT)
 
 CHMO:0000596 | distortionless enhancement with polarization transfer (DEPT)
 
 The physical chemical entity[CHEBI_24431] was deposited to the Molecule Archive of the Karlsruhe Insitute of Technology (KIT) with the following Sample ID: 

 Used ontologies:
 CHEBI - Chemical Entities of Biological Interest
 CHEMINF - chemical information ontology (information entities about chemical entities)
 CHMO - Chemical Methods Ontology
 OBI - Ontology for Biomedical Investigations
DOI: 10.14272/rspzsdwvqwraef-uhfffaoysa-n/chmo0000604
title: heteronuclear single quantum coherence (HSQC) (hepta-1,6-diyne)
title: InChI=1S/C7H8/c1-3-5-7-6-4-2/h1-2H,5-7H2

description: dataset for heteronuclear single quantum coherence (HSQC)
DOI: 10.15468/dl.kcefsr
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2009",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118324-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.um9m5v
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2009",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118325-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.caszfh
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2019",
 "TaxonKey is Ambystoma mexicanum (Shaw & Nodder, 1798)"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118326-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.