cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25287544
title: Supplementary Material for: Arterial-Portal Venous Shunt after Drug-Eluting Bead Transarterial Chemoembolization for Hepatocellular Carcinoma Patients: Risk factors and Impact on Patient Survival

description: Introduction: The effectiveness of transarterial chemoembolization (TACE) in treating hepatocellular carcinoma (HCC) has been well established. The differential impacts of drug-eluting bead TACE (DEB-TACE) as opposed to conventional TACE (cTACE) on vascular changes, such as arterial-portal venous shunts (APS), have been recognized. However, their subsequent effects on treatment outcomes have not been fully explored. This study aims to identify risk factors associated with the occurrence of APS in HCC patients treated with DEB-TACE and to evaluate its impact on patient survival.
Methods: A retrospective analysis was conducted from January 2012 to December 2018 including 74 HCC patients receiving DEB-TACE as initial treatment and a 1:1 conventional cTACE. Kaplan-Meier analysis estimated overall survival (OS) and progression-free survival (PFS). Logistic regression identified significant risk factors for APS occurrence after DEB-TACE.
Results: APS incidence was significantly higher after DEB-TACE than cTACE (46.0% vs. 16.2%, p &lt; 0.001). No significant difference in median OS between APS and non-APS groups after DEB-TACE: 50 months (24.6-75.4) vs 26.9 months (19.5-43.2), p = 0.111; median PFS was 15.6 months (4.1-27.1) and 9.5 months (6.8-12.1) for the two groups, respectively, p = 0.065. Risk factors for APS occurrence after DEB-TACE were more than two feeding arteries (OR: 7.25, 95% CI: 1.82-28.95, p = 0.005) and non-selective embolization (OR: 8.02, 95% CI: 2.30-27.95, p = 0.001).
Conclusion: APS occurrence was higher in DEB-TACE-treated HCC patients, but it did not significantly affect overall survival and progression free survival. More than two feeding arteries and non-selective embolization were significant risk factors for APS occurrence after DEB-TACE.
DOI: 10.6084/m9.figshare.25469956
title: Supplementary Material for: Characterization of pleural mesothelioma by hierarchical clustering analyses using immune cells within tumor microenvironment.

description: Introduction: Over the past decade, classifications using immune cell infiltration have been applied to many types of tumors; however, mesotheliomas have been less frequently evaluated. Methods: In this study, 60 well-characterized pleural mesotheliomas (PMs) were evaluated immunohistochemically for the characteristics of immune cells within tumor microenvironment (TME) using 10 immunohistochemical markers CD3, CD4, CD8, CD56, CD68, CD163, FOXP3, CD27, PD-1 and TIM-3. For further characterization of PMs, hierarchical clustering analyses using these 10 markers were performed. Results: Among the immune cell markers, CD3 (P &lt; 0.0001), CD4 (P = 0.0016), CD8 (P = 0.00094), CD163+ (P = 0.042) and FOXP3+ (P = 0.025) were significantly associated with unfavorable clinical outcome. Immune checkpoint receptor expressions on tumor-infiltrating lymphocytes such as PD-1 (P = 0.050), CD27 (P = 0.014) and TIM-3 (P = 0.0098) were also associated with unfavorable survival. Hierarchical clustering analyses identified three groups showing specific characteristics and significant associations with patient survival (P = 0.011): the highest number of immune cells (ICHigh); the lowest number of immune cells, especially CD8+ and CD163+ cells (ICLow); and intermediate number of immune cells (ICInt). ICHigh tumors showed significantly higher expression of PD-L1 (P = 0.00038). Cox proportional hazard model identified ICHigh [hazard ratio (HR) = 2.90] and ICInt (HR = 2.97) as potential risk factors compared with ICLow. Tumor CD47 (HR = 2.36), tumor CD70 (HR = 3.04) and tumor PD-L1 (HR = 3.21) expressions were also identified as potential risk factors for PM patients. Conclusion: Our findings indicate immune checkpoint and/or immune cell-targeting therapies against CD70-CD27 and/or CD47-SIRPA axes may be applied for PM patients in combination with PD-L1-PD-1 targeting therapies in accordance with their tumor immune microenvironment characteristics.
DOI: 10.6084/m9.figshare.25771887
title: Supplementary Material for: Clinically Applicable Pan-Origin Cancer Detection for Lymph Nodes via AI-Based Pathology

description: Lymph node metastasis is one of the most common ways of tumour metastasis. The presence or absence of lymph node involvement influences the cancer’s stage, therapy, and prognosis. The integration of artificial intelligence systems in the histopathological diagnosis of lymph nodes after surgery is urgent. Here, we propose a pan-origin lymph node cancer metastasis detection system. The system is trained by over 700 whole slide images and is composed of two deep learning models to locate the lymph nodes and detect cancers. It achieved a area under the receiver operating characteristic (ROC) curve (AUC) of 0.958, with a 95.2% sensitivity and 72.2% specificity, on 1,402 whole-slide images (WSIs) from 49 organs at the National Cancer Center, China. Moreover, we demonstrated that the system could perform robustly with 1,051 WSIs from 52 organs from another medical center, with a AUC of 0.925. Our research represents a step forward in a pan-origin lymph node metastasis detection system, providing accurate pathological guidance by reducing the probability of missed diagnosis in routine clinical practice.
DOI: 10.6084/m9.figshare.805091.v3
title: Vegetational and Environmental Data from an Araucaria Forest Fragment in Southern Brazil

description: Data from: HIGUCHI, P.; SILVA, A.C ; FERREIRA, T. S. ; SOUZA, S.T. ; GOMES, J. P. ; SILVA, K. M. ; SANTOS, K. F. ; LINKE, C. ; PAULINO, P. S. . Influência de variáveis ambientais sobre o padrão estrutural e florístico do componente arbóreo, em um fragmento de Floresta Ombrófila Mista Montana em Lages, SC. Ciência Florestal (UFSM. Impresso), v. 22, p. 79-90, 2012. - See more at: http://figshare.com/preview/_preview/805090#sthash.3qnluMSM.dpuf
DOI: 10.15468/dl.669cyj
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ceraleptus obtusus (Brullé, 1839)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 68 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019682-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sgzadm
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Charagochilus gyllenhalii (Fallen, 1807)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 387 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019685-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nnm4wu
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Betula utilis D.Don"
 ]
}

 The dataset includes 158 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019687-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25283056
title: Global variation of adjusted N2O EFs (no longer in use)

description: Legacy effects cause systematic underestimation of N<sub>2</sub>O emission factors
DOI: 10.6084/m9.figshare.25283056.v3
title: Global variation of adjusted N2O EFs (no longer in use)

description: Legacy effects cause systematic underestimation of N<sub>2</sub>O emission factors
DOI: 10.15468/dl.zjy8yw
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bougainvillea pomacea Choisy"
 ]
}

 The dataset includes 35 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019688-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.24t7he
title: Occurrence Download

description: A dataset containing 18904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Solenopsis invicta Buren, 1972"
 ]
}

 The dataset includes 18904 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019686-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d57bgs
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrus kawakamii Hayata"
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019692-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dy9a2c
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Crocus sativus L."
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019690-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8svq5m
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Charagochilus weberi Wagner, 1953",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019694-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27247677
title: The annotation files of Trichophyton mentagrophytes

description: The annotation files of Trichophyton mentagrophytes
DOI: 10.6084/m9.figshare.27247677.v1
title: The annotation files of Trichophyton mentagrophytes

description: The annotation files of Trichophyton mentagrophytes
DOI: 10.15468/dl.kfybee
title: Occurrence Download

description: A dataset containing 56259 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is greater than 2004",
 "DecimalLongitude is greater than or equal to 10.04",
 "DecimalLongitude is less than or equal to 10.15",
 "DecimalLatitude is greater than or equal to 55.84",
 "DecimalLatitude is less than or equal to 55.87"
 ]
}

 The dataset includes 56259 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019693-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yeghwe
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chlamydatus pulicarius (Fallen, 1807)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 212 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019695-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xg96es
title: Occurrence Download

description: A dataset containing 12312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Pyrus calleryana Decne."
 ]
}

 The dataset includes 12312 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019697-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13944278
title: Code and Data for "Green Growth in the Mirror of History: Long-Term Evidence on Decoupling Emissions from GDP"

description: The code and files contained in this repository allow for the reproduction of the results and figures from the paper “Green Growth in the Mirror of History: Long-Term Evidence on Decoupling Emissions from GDP” (submitted to Nature Communications). In particular, it generates the historical database of gross domestic product (GDP), population, and greenhouse gas emissions (GHGe) at the national, regional, and global levels from 1820 to 2022. It also includes the code required for data processing and allows reproduction of all figures and analyses in the manuscript.

The repository is organized into a set of folders functioning as an R project. These folders are as follows:

·       data_input: Contains the databases and files necessary to run our code that have been preprocessed by ourselves. The databases which we have not preprocessed are downloaded directly from their original sources using the links provided in the R scripts. These databases were created by other researchers. Please cite the original databases if you use them directly.

·       code: Contains R scripts used to process the datasets from data_input and to produce the figures. These scripts are:

o   common.R contains code that is sourced in the other scripts and does not need to be run by the user.

o   input_processing.R processes the data input to generate the main dataset saved in the folder data_output and used to make the figures.

o   figures.R contains the code that processes the main dataset to produce each figure.

·       data_output: Contains datasets generated by the scripts contained in input_processing.R that are used to produce the figures.



figures: This folder contains all the figures produced by figures.R. Note that some figures also underwent purely aesthetic edits in external software (Adobe Illustrator) for clarity purposes.
DOI: 10.5281/zenodo.13944279
title: Code and Data for "Green Growth in the Mirror of History: Long-Term Evidence on Decoupling Emissions from GDP"

description: The code and files contained in this repository allow for the reproduction of the results and figures from the paper “Green Growth in the Mirror of History: Long-Term Evidence on Decoupling Emissions from GDP” (submitted to Nature Communications). In particular, it generates the historical database of gross domestic product (GDP), population, and greenhouse gas emissions (GHGe) at the national, regional, and global levels from 1820 to 2022. It also includes the code required for data processing and allows reproduction of all figures and analyses in the manuscript.

The repository is organized into a set of folders functioning as an R project. These folders are as follows:

·       data_input: Contains the databases and files necessary to run our code that have been preprocessed by ourselves. The databases which we have not preprocessed are downloaded directly from their original sources using the links provided in the R scripts. These databases were created by other researchers. Please cite the original databases if you use them directly.

·       code: Contains R scripts used to process the datasets from data_input and to produce the figures. These scripts are:

o   common.R contains code that is sourced in the other scripts and does not need to be run by the user.

o   input_processing.R processes the data input to generate the main dataset saved in the folder data_output and used to make the figures.

o   figures.R contains the code that processes the main dataset to produce each figure.

·       data_output: Contains datasets generated by the scripts contained in input_processing.R that are used to produce the figures.



figures: This folder contains all the figures produced by figures.R. Note that some figures also underwent purely aesthetic edits in external software (Adobe Illustrator) for clarity purposes.
DOI: 10.15468/dl.a63c7y
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chlamydatus pullus (Reuter, 1870)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 243 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019698-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fjyzg9
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptobrachella heteropus (Boulenger, 1900)"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019699-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7c3nxc
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aleurites moluccanus var. moluccanus"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019700-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebp9ds
title: Occurrence Download

description: A dataset containing 47 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Chorosoma schillingi (Schummel)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 47 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019702-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jamfwd
title: Occurrence Download

description: A dataset containing 147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bougainvillea praecox Griseb."
 ]
}

 The dataset includes 147 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019701-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m3hrfx
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leptobrachella liui (Fei & Ye, 1990)"
 ]
}

 The dataset includes 50 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019704-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k3hvau
title: Occurrence Download

description: A dataset containing 54363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Denmark",
 "OccurrenceStatus is Present",
 "CoordinateUncertaintyInMeters is less than 50000",
 "Year is greater than 2005",
 "DecimalLongitude is greater than or equal to 10.04",
 "DecimalLongitude is less than or equal to 10.15",
 "DecimalLatitude is greater than or equal to 55.84",
 "DecimalLatitude is less than or equal to 55.87"
 ]
}

 The dataset includes 54363 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019703-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmks7y
title: Occurrence Download

description: A dataset containing 407 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Closterotomus norwegicus Rosenzweig, 1997",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 407 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019705-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.