cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12277976
title: Equation_Tumor3.m represents the condition in which the activation rate of IKK is inhibited after the introduction of MM cells. from Mathematical modelling of the role of GADD45<i>β</i> in the pathogenesis of multiple myeloma

description: Multiple myeloma (MM) is an incurable disease with relatively high morbidity and mortality rates. Great efforts were made to develop nuclear factor-kappa B (NF-κB)-targeted therapies against MM disease. However, these treatments influence MM cells as well as normal cells, inevitably causing serious side effects. Further research showed that NF-κB signalling promotes the survival of MM cells by interacting with JNK signalling through growth arrest and DNA damage-inducible beta (GADD45β), the downstream module of NF-κB signalling. The GADD45β-targeted intervention was suggested to be an effective and MM cell-specific treatment. However, the underlying mechanism through which GADD45β promotes the survival of MM cells is usually ignored in the previous models. A mathematical model of MM is built in this paper to investigate how NF-κB signalling acts along with JNK signalling through GADD45β and MKK7 to promote the survival of MM cells. The model cannot only mimic the variations in bone cells, the bone volume and MM cells with time, but it can also examine how the NF-κB pathway acts with the JNK pathway to promote the development of MM cells. In addition, the model also investigates the efficacies of GADD45β<i>-</i> and NF-κB-targeted treatments, suggesting that GADD45β-targeted therapy is more effective but has no apparent side effects. The simulation results match the experimental observations. It is anticipated that this model could be employed as a useful tool to initially investigate and even explore potential therapies involving the NF-κB and JNK pathways in the future.
DOI: 10.6084/m9.figshare.12277985
title: tumor_GADD45B.m is used to reproduce what happens after inhibiting the formation rate of GADD45B|MKK7 complex. from Mathematical modelling of the role of GADD45<i>β</i> in the pathogenesis of multiple myeloma

description: Multiple myeloma (MM) is an incurable disease with relatively high morbidity and mortality rates. Great efforts were made to develop nuclear factor-kappa B (NF-κB)-targeted therapies against MM disease. However, these treatments influence MM cells as well as normal cells, inevitably causing serious side effects. Further research showed that NF-κB signalling promotes the survival of MM cells by interacting with JNK signalling through growth arrest and DNA damage-inducible beta (GADD45β), the downstream module of NF-κB signalling. The GADD45β-targeted intervention was suggested to be an effective and MM cell-specific treatment. However, the underlying mechanism through which GADD45β promotes the survival of MM cells is usually ignored in the previous models. A mathematical model of MM is built in this paper to investigate how NF-κB signalling acts along with JNK signalling through GADD45β and MKK7 to promote the survival of MM cells. The model cannot only mimic the variations in bone cells, the bone volume and MM cells with time, but it can also examine how the NF-κB pathway acts with the JNK pathway to promote the development of MM cells. In addition, the model also investigates the efficacies of GADD45β<i>-</i> and NF-κB-targeted treatments, suggesting that GADD45β-targeted therapy is more effective but has no apparent side effects. The simulation results match the experimental observations. It is anticipated that this model could be employed as a useful tool to initially investigate and even explore potential therapies involving the NF-κB and JNK pathways in the future.
DOI: 10.6084/m9.figshare.7559606
title: Additional file 9: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Table S2. The DNB members of Arabidopsis flower development enriched GO terms and metabolic pathways. (TXT 2 kb)
DOI: 10.6084/m9.figshare.7559606.v1
title: Additional file 9: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Table S2. The DNB members of Arabidopsis flower development enriched GO terms and metabolic pathways. (TXT 2 kb)
DOI: 10.6084/m9.figshare.10184915
title: MOESM6 of Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.)

description: Additional file 6: Table S6. Summary of SSR markers in subgenome B06â B10.
DOI: 10.6084/m9.figshare.10184915.v1
title: MOESM6 of Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.)

description: Additional file 6: Table S6. Summary of SSR markers in subgenome B06â B10.
DOI: 10.6084/m9.figshare.7559471.v1
title: Additional file 2: of The traditional Chinese formulae Ling-gui-zhu-gan decoction alleviated non-alcoholic fatty liver disease via inhibiting PPP1R3C mediated molecules

description: Table S1. The overlapped differentially expressed genes. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.7559549
title: Additional file 6: of Clonal derivation of white and brown adipocyte progenitor cell lines from human pluripotent stem cells

description: Table S3. Mitochondria quantitation data used in support of AdditionalÂ fileÂ 3: Figure S1 (sheet 1) and ELISA data used in support of Fig. 3b (sheet 2) are shown. (XLSX 16 kb)
DOI: 10.25386/genetics.11233499
title: Supplemental Material for Serrano-Saiz et al., 2020

description: Supplementary files
DOI: 10.25386/genetics.11233499.v1
title: Supplemental Material for Serrano-Saiz et al., 2020

description: Supplementary files
DOI: 10.6084/m9.figshare.10184924
title: MOESM7 of Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.)

description: Additional file 7: Table S7. Summary of SSR markers on nine scaffolds. Table S8. Summary of common SSR markers in four Arachis species. Table S9. Summary of 188 SSR markers tested by PCR amplification. Table S10. Summary of the public SSR markers with only a single locus match to the reference genome. Table S11. Candidate gene identification and annotation for the target QTL, qLLS_T13_A05_7.
DOI: 10.6084/m9.figshare.10184924.v1
title: MOESM7 of Genome-wide identification of microsatellite markers from cultivated peanut (Arachis hypogaea L.)

description: Additional file 7: Table S7. Summary of SSR markers on nine scaffolds. Table S8. Summary of common SSR markers in four Arachis species. Table S9. Summary of 188 SSR markers tested by PCR amplification. Table S10. Summary of the public SSR markers with only a single locus match to the reference genome. Table S11. Candidate gene identification and annotation for the target QTL, qLLS_T13_A05_7.
DOI: 10.6084/m9.figshare.23812406.v1
title: Additional file 1 of Functional polymorphism in miR-208 is associated with increased risk for ischemic stroke

description: Supplementary Material 1
DOI: 10.4121/240d3907-d6cf-40a3-b4ff-08779f1a13ab
title: Data underlying the analysis of policy instruments for timber construction in Amsterdam

description: This dataset contains the analysis of policy instruments identified to promote timber construction in Amsterdam. It builds upon policy documents analysis and the set of policy instruments identified by CircuLaw (City of Amsterdam).
DOI: 10.4121/240d3907-d6cf-40a3-b4ff-08779f1a13ab.v1
title: Data underlying the analysis of policy instruments for timber construction in Amsterdam

description: This dataset contains the analysis of policy instruments identified to promote timber construction in Amsterdam. It builds upon policy documents analysis and the set of policy instruments identified by CircuLaw (City of Amsterdam).
DOI: 10.6084/m9.figshare.10184981
title: MOESM2 of Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

description: Additional file 2: Table S2. Detailed information of Gene distribution for Tara oceans dataset. Table S3. Nf scores calculated based on the UniRef and Tara oceans datasets. Table S5. Frequency of 235 genera appeared in the 27 Pfam families. Table S7. Pfam functional annotation for 797 families selected by the combined Tara and MetaClust dataset.
DOI: 10.6084/m9.figshare.10184981.v1
title: MOESM2 of Fueling ab initio folding with marine metagenomics enables structure and function predictions of new protein families

description: Additional file 2: Table S2. Detailed information of Gene distribution for Tara oceans dataset. Table S3. Nf scores calculated based on the UniRef and Tara oceans datasets. Table S5. Frequency of 235 genera appeared in the 27 Pfam families. Table S7. Pfam functional annotation for 797 families selected by the combined Tara and MetaClust dataset.
DOI: 10.6084/m9.figshare.7559573
title: Additional file 10: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Figure S3. The DNB members of flower development in rice. (TXT 9 kb)
DOI: 10.6084/m9.figshare.7559534
title: Additional file 1: of Clonal derivation of white and brown adipocyte progenitor cell lines from human pluripotent stem cells

description: Table S1. Illumina-based microarray data on expression levels of FABP4, UCP1, ADIPOQ, CITED1, LIPASIN, and MYH3, from control cells and 20 random hES cell-derived clonal embryonic progenitor cell lines differentiated for 14â days in (BMP4, Rosi, T3, CL) used in support of Fig. 1. Values less than 130 RFU were considered to be background signal. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.23812442
title: Additional file 3 of Genome-wide characterization, evolutionary analysis, and expression pattern analysis of the trihelix transcription factor family and gene expression analysis under MeJA treatment in Panax ginseng

description: Additional file 3: Table S3. Chromosome localization and collinearity analysis data of PgGT gene.
DOI: 10.6084/m9.figshare.7559537.v1
title: Additional file 2: of Clonal derivation of white and brown adipocyte progenitor cell lines from human pluripotent stem cells

description: Table S2. Illumina-based microarray data on fBAT and SAT cells and the hES cell-derived clonal embryonic progenitor cell lines E85, E3, C4ELS5.1, C4ELS5.5, C4ELSR2, NP88, and NP110 in progenitor state (Ctrl) or differentiated for 14â days in (BMP4, Rosi, T3, CL). Calculation of mean RFUs in control (CTRL) and differentiated conditions for each line used in support of Fig. 2a (sheet 2) and Fig. 2b (sheet 3) are shown. Values less than 130 RFU were considered to be background signal. (XLSX 11511 kb)
DOI: 10.6084/m9.figshare.23812436
title: Additional file 1 of Genome-wide characterization, evolutionary analysis, and expression pattern analysis of the trihelix transcription factor family and gene expression analysis under MeJA treatment in Panax ginseng

description: Additional file 1: Table S1. Basic information of PgGT gene family.
DOI: 10.6084/m9.figshare.23812436.v1
title: Additional file 1 of Genome-wide characterization, evolutionary analysis, and expression pattern analysis of the trihelix transcription factor family and gene expression analysis under MeJA treatment in Panax ginseng

description: Additional file 1: Table S1. Basic information of PgGT gene family.
DOI: 10.6084/m9.figshare.13326611
title: Coevolution of policy and science during the pandemic

description: Data and code for paper "Coevolution of policy and science during the pandemic"
DOI: 10.6084/m9.figshare.8087945.v1
title: Additional file 14: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of KEGG enrichment analysis of DCPs. (XLSX 14â kb)
DOI: 10.6084/m9.figshare.8087954
title: Additional file 15: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of PPI analysis of DCPs. (XLSX 45â kb)
DOI: 10.6084/m9.figshare.8087960.v1
title: Additional file 17: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of DCPs involved in carbon fixation. (XLSX 14â kb)
DOI: 10.6084/m9.figshare.8087996
title: Additional file 5: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of lysine crotonylome. (XLSX 3355â kb)
DOI: 10.6084/m9.figshare.8088005.v1
title: Additional file 7: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of global proteome. (XLSX 1932â kb)
DOI: 10.6084/m9.figshare.8088011
title: Additional file 8: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of subcellular localization. (XLSX 326â kb)
DOI: 10.6084/m9.figshare.8088011.v1
title: Additional file 8: of Ammonium triggered the response mechanism of lysine crotonylome in tea plants

description: The information of subcellular localization. (XLSX 326â kb)
DOI: 10.6084/m9.figshare.8088035.v1
title: Additional file 1: of Transcriptome analysis reveals that barnyard grass exudates increase the allelopathic potential of allelopathic and non-allelopathic rice (Oryza sativa) accessions

description: Table S1. Primer (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8088050.v1
title: Additional file 3: of Transcriptome analysis reveals that barnyard grass exudates increase the allelopathic potential of allelopathic and non-allelopathic rice (Oryza sativa) accessions

description: Table S3. Number of mapped reads (XLSX 9 kb)
DOI: 10.48366/r662140
title: Silicone lenses with variable focus

description: This comparison lists literature of tunable solid body lenses made of highly transparent silicone (polydimethylsiloxane, PDMS). It compares their mechanical and optical properties.
The lenses present in the studies are mainly deformed in radial direction / equatorial plane; studies investigating axial deformation are listed as well. The deformation causes a change of lens curvature and results in a shift of focal length.
Here, "pull"-deformation was assigned a positive strain and "push"-deformation a negative one. This leads to increasing or decreasing focal lengths, and thus the relative focal length change takes on positive of negative signs, respectively.
Incomplete research data provided in the studies was derived manually and commented accordingly in the comparison.
DOI: 10.6084/m9.figshare.7559231.v1
title: Additional file 5: of Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone

description: Treatment to Health Network in GML format. (GML 42 kb)
DOI: 10.6084/m9.figshare.7559249.v1
title: Additional file 8: of Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone

description: Jaccard index matrix of similarity for PXPN nodes in XLSX format. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7559252
title: Additional file 9: of Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone

description: Jaccard index matrix of similarity for PXPN edges in XLSX format. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7559252.v1
title: Additional file 9: of Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone

description: Jaccard index matrix of similarity for PXPN edges in XLSX format. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7559597.v1
title: Additional file 6: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Table S4. The degree of correlation between each pair of DNB genes during Arabidopsis flower development. (TXT 7 kb)
DOI: 10.6084/m9.figshare.7559603.v1
title: Additional file 8: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Table S6. The gene regulatory network Cytoscape file. (TXT 7 kb)
DOI: 10.6084/m9.figshare.13324042
title: Additional file 3 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 3.
DOI: 10.6084/m9.figshare.13324051.v1
title: Additional file 6 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 6.
DOI: 10.15468/dl.hgttvh
title: Occurrence Download

description: A dataset containing 2812 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pharomachrus pavoninus (Spix, 1824)"
 ]
}

 The dataset includes 2812 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400126-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tjs9nk
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gilbertiodendron aylmeri (Hutch. & Dalziel) J.Léonard"
 ]
}

 The dataset includes 64 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081099-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap8yx7
title: Occurrence Download

description: A dataset containing 3948 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sclerocarya birrea (A.Rich.) Hochst."
 ]
}

 The dataset includes 3948 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080423-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htskzy
title: Occurrence Download

description: A dataset containing 5183 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation"
 ]
 },
 "TaxonKey is Antilocapra americana (Ord, 1815)"
 ]
}

 The dataset includes 5183 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015278-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5c84v
title: Occurrence Download

description: A dataset containing 1469 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Falkland Islands (Malvinas)",
 "Country is Chile",
 "Country is Argentina"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Phalcoboenus australis (J.F.Gmelin, 1788)"
 ]
}

 The dataset includes 1469 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285210-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mxws8v
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((22.77566 -27.48528,65.22434 -27.48528,65.22434 -10.51472,22.77566 -10.51472,22.77566 -27.48528))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Canarium madagascariense Engl."
 ]
}

 The dataset includes 145 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053378-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqnlmm
title: Occurrence Download

description: A dataset containing 1142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achatina fulica (Bowdich, 1822)"
 ]
}

 The dataset includes 1142 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006668-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmjz37
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Moschus Linnaeus, 1758"
 ]
}

 The dataset includes 19 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016551-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrfqqw
title: Occurrence Download

description: A dataset containing 1869 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Amaranthus tricolor L."
 ]
}

 The dataset includes 1869 records from 139 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053381-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvwzwm
title: Occurrence Download

description: A dataset containing 27110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gyps coprotheres (J.R.Forster, 1798)"
 ]
}

 The dataset includes 27110 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0296750-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pzroam
title: Occurrence Download

description: A dataset listing the 83 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.31862 38.63527,-90.31836 38.63641,-90.31819 38.63685,-90.31795 38.63838,-90.31809 38.63844,-90.31849 38.63844,-90.31937 38.63852,-90.32011 38.63854,-90.32028 38.63841,-90.32023 38.63822,-90.32041 38.6382,-90.32104 38.63803,-90.32095 38.6377,-90.32085 38.63591,-90.32094 38.63573,-90.32138 38.63559,-90.32139 38.63546,-90.32089 38.63537,-90.31875 38.63521,-90.31862 38.63527))",
 "HasCoordinate is true",
 "TaxonKey is Aves",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 83 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000407-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq53m2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "TaxonKey is Okapia Lankester, 1901"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016550-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.