cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t5ryx5mk2k
title: Transcriptome analysis of Pedobacter lusitanus NL19 grown in TSB and PC culture media

description: We report the application of RNA-seq metodology to analyze the differentially expressed genes (DEGs) of Pedobacter lusitanus NL19 grown in two different culture media, TSB and PC, characterized to contain high and low concentration of peptone from casein (PC), respectively. Broth with higher concentrations of PC has been previously associated with the abolishment of antibiotic production by P. lusitanus NL19. RNA-seq results showed that P. lusitanus NL19 grown in TSB and in PC generated 22 783 626 and 43 625 972 sequence reads, respectively. For gene expression analysis, 96,67% and 96,53% of the total fragments obtained for TSB and PC, respectively, were successfully mapped against P. lusitanus NL19 reference genome which allowed the identification of a total of 261 DEGs. More specifically, 108 genes were upregulated when NL19 was grown in TSB compared with its growth in PC, whereas 153 were downregulated. The biological function of most of these DEGs (53,7%) could not be predicted. For the others, genes involved in molecular functions and encoding cellular components were mostly upregulated and genes encoding biological processes were mostly downregulated. In general this study provided some insights on the main cellular pathways that are shaped in the presence of different concentrations of PC in P. lusitanus NL19, showing that high concentrations of PC strongly downregulates the de novo biosynthesis of biotin and the transcription of genes required for pedopeptin’s production, including a L-Dap biosynthetic operon. On the other hand, it increases the transcription of MFS efflux pumps and iron-uptake systems.
DOI: 10.6084/m9.figshare.21273555.v3
title: Effects analysis of reward functions on reinforcement learning for traffic signal control

description: Data set for reinforcement learning for traffic signal control
DOI: 10.6084/m9.figshare.22756817.v1
title: Factors Influencing Secondary Schools Students’ Intention towards TVET - Extended Data

description: Research instrument for survey
DOI: 10.6084/m9.figshare.28904843.v2
title: TDCM25

description: Materials exhibit phase and temperature dependent properties that are critical for applications ranging from catalysis to energy storage and environmental remediation and accurate modeling of these dependencies requires high-quality, multi-modal datasets. In this work, TDCM25 (Temperature Dependent Crystalline Materials 2025) is introduced as a comprehensive dataset featuring approximately 100,000 entries spanning three crystalline phases of TiO2(anatase, brookite, and rutile) sampled over 21 temperatures from 0K to 1000K. Each entry comprises 3D atomic coordinates, corresponding RGB molecular images, and detailed textual metadata including Ti:O ratios, temperature, spatial dimensions, and transformation parameters. TDCM25 provides a benchmark for developing and evaluating machine learning methods that integrate multi-modal data to capture temperature dependent material behavior. The dataset is publicly available at https://github.com/KurbanIntelligenceLab/TDCM25.
DOI: 10.6084/m9.figshare.3503528.v1
title: Pace of Landscape Change and Pediment Development in the Northeastern Sonoran Desert, United States

description: Pediments of the Sonoran Desert in the United States have intrigued physical geographers and geomorphologists for nearly a century. These gently sloping bedrock landforms are a staple of the desert landscape that millions visit each year. Despite the long-lived scientific curiosity, an understanding of the processes operating on the pediment has remained elusive. In this study we revisit the extensive history of pediment research. We then apply geospatial, field, and laboratory cosmogenic <sup>10</sup>Be nuclide dating and back-scattered electron microscopy methods to assess the pace and processes of landscape change on pediment systems abutting the Salt River in Arizona. Our study focuses on the Usery pediments linked to base-level fluctuations (river terraces) of the Salt River. Relict pediment surfaces were reconstructed with dGPS data and kriging methodologies utilized in ArcGIS—based on preserved evidence of ancient pediment surfaces. <sup>10</sup>Be ages of Salt River terraces established a chronology of incision events, where calculating the volume between the reconstructed relict pediment and modern surface topography established minimum erosion rates (∼41 mm/ka to ∼415 mm/ka). Pediment area and length appear to have a positive correlation to erosion rate and development of planar pediment surfaces. Field and laboratory observations reveal that pediment systems adjust and stabilize at each Salt River terrace. Relief reduction across the pediment begins with pediment channel incision via headward erosion. Next, tributary drainage capture begins and collapses interfluves. Lateral stream erosion promotes planation where the porosity of decayed granite along channel banks exceeds the bedrock underneath ephemeral channels.
DOI: 10.6084/m9.figshare.3830016.v2
title: scikit-learn rcv1 dataset lyrl2004_vectors_test_pt2.dat.gz

description: Part of the rcv1 dataset used in scikit-learn.
DOI: 10.6084/m9.figshare.9892199.v1
title: Checklist de angiospermas da APA Municipal do Rio Vermelho/Humboldt, Santa Catarina, Brasil / Checklist of angiosperms from APA Municipal do Rio Vermelho/Humboldt, Santa Catarina, Brazil

description: <b>Tabela S1</b> – Lista de Angiospermas da APA do Rio Vermelho/Humboldt. <b>Table S1</b> – List of the Angiosperms from the APA of Rio Vermelho/Humboldt.
DOI: 10.17632/knfykctgx5
title: RPA in the Public Sector: A Systematic Literature Review

description: Robotic Process Automation (RPA) is an emerging technology that has the potential to transform administrative management in the public sector by reducing workloads and optimizing resources. However, despite these benefits, the implementation of automation presents significant challenges, as experience indicates that the inappropriate selection of processes and the overestimation of their advantages often compromise the success of initiatives.

The aim of this study is to conduct a systematic review of the literature to explore the state of the art on the use of RPA in the public sector, , identifying the key benefits, barriers and impact on staff performance.

The search strategy used identified 318 studies, of which 20 were considered primary. The findings show that while automation can increase efficiency and reduce costs by automating repetitive tasks, successful implementation depends primarily on rigorous process selection and the digital readiness of the workforce.The organizational and technological challenges identified require strategic policies and a greater alignment between institutional needs and technological competencies. In addition, an analysis has been made of how the lessons learned in the private sector can be adapted to optimise the application of this technology in government contexts.
DOI: 10.6084/m9.figshare.16430478.v6
title: Daily soil moisture mapping at 1 km resolution based on SMAP data for desertification areas in Northern China

description: Desertification areas in North China, which are very sensitive to SM, were selected as the study area. The downscaled soil moisture with a spatial resolution of 1 km on a daily scale from 2015 to 2020 was produced based on 36km SMAP soil moisture data. The scale factor is 0.0001. The invalid values are represented with 65535. The name of each image is its corresponding date (Julian day format, 'YYYYDDD').
DOI: 10.6084/m9.figshare.24891618.v2
title: Factors associated with the retention and attrition of medical graduates in clinical practice in the Philippines - dataset and analysis

description: <b>This questionnaire, dataset, and analytic method is a Facebook group survey done in 2023 among physicians in the Philippines. It asks about their likelihood of leaving clinical practice, reducing clinical hours, and staying in clinical practice if their clinical practice experience improves.</b>
DOI: 10.6084/m9.figshare.26355841.v1
title: SERVQUAL Mizoram Data File

description: Accessible and affordable healthcare is crucial for achieving the Sustainable Development Goals and Vikshit Bharat 2047. In Mizoram, where public healthcare is heavily relied upon, high-quality healthcare is paramount. No prior study exists regarding public hospital service quality in this region, necessitating investigation and filling the research gap. This study investigates the urban-rural divide in public healthcare service quality using SERVQUAL model, exploring its impact on service satisfaction and intended behaviour. A multi-stage cluster sampling technique yielded a representative sample of 420 patients. Results reveal significant differences in SERVQUAL scores between urban and rural areas, favouring rural areas. Regression analysis confirms service quality and patient satisfaction as robust predictors of positive behavioural intentions. The study concludes that enhancing healthcare infrastructure, capacity-building of professionals, and effective management strategies are crucial for improving service delivery, and the need for systemic refinements to address the persistent urban-rural disparity.
DOI: 10.6084/m9.figshare.28100549.v1
title: Patterns of AIDS-defining and Non-AIDS-defining Malignancies in People Living with HIV/AIDS: A 6- Year Retrospective Study from a Tertiary Care Center in South India

description: Patterns of AIDS-defining and Non-AIDS-defining Malignancies in People Living with HIV/AIDS: A 6- Year Retrospective Study from a Tertiary Care Center in South India
DOI: 10.6084/m9.figshare.28227863.v2
title: Mycobacterium tuberculosis wgMLST scheme.

description: Backup of BioNumerics Mycobacterium tuberculosis wgMLST scheme.
DOI: 10.6084/m9.figshare.3485204.v1
title: Arlington, Massachusetts - Aerial imagery object identification dataset for building and road detection, and building height estimation

description: This dataset is part of the larger data collection, “Aerial imagery object identification dataset for building and road detection, and building height estimation”, linked to in the references below and can be accessed here: https://dx.doi.org/10.6084/m9.figshare.c.3290519. For a full description of the data, please see the metadata: https://dx.doi.org/10.6084/m9.figshare.3504413. Imagery data from the United States Geological Survey (USGS); building and road shapefiles are from OpenStreetMaps (OSM) (these OSM data are made available under the Open Database License: http://opendatacommons.org/licenses/odbl/1.0/); and the Lidar data are from U.S. National Oceanic and Atmospheric Administration (NOAA), the Texas Natural Resources Information System (TNRIS).
DOI: 10.6084/m9.figshare.c.3666502_d65.v2
title: Matlab code for audio segmentation and noise removal

description: A version of this code was used in order to automatically segment the raw audio files (i.e. to retrieve the start and end positions given in FileInfo.csv) and filter out noise-only recordings. Parameter adjustment might be needed for specific tasks. The main function is SAN.m. See SAN_demo.m for usage example.
DOI: 10.6084/m9.figshare.14413541.v1
title: Supplementary Material for: Subarachnoid Hemorrhage and Extracorporeal Blood Purification with HA-380 and High-Volume Hemofiltration: A New Therapeutic Challenge at the Neurocritical Care Unit? A Case Report

description: We present the case of a patient with subarachnoid hemorrhage (SAH) secondary to a ruptured cerebral aneurysm and a refractory shock with high doses of vasopressors without a proven source of infection. This patient received therapy with high-volume hemofiltration plus adsorption, resolving the hemodynamic deterioration and with good neurological evolution. Our clinical case proposes that extracorporeal therapies may have a feasibility role in the management of complications of SAH.
DOI: 10.6084/m9.figshare.19927343.v1
title: Association study between the Taq1A (rs1800497) polymorphism and schizophrenia in a Brazilian sample

description: Schizophrenia is a severe psychotic disorder with recurrent relapse and functional impairment. It results from a poorly understood gene-environment interaction. The Taq1A polymorphism (located in the gene cluster NTAD) is a likely candidate for schizophrenia. Its rs1800497 polymorphism was shown to be associated with DRD2 gene expression. Therefore the present work aims to investigate a possible association between schizophrenia and such polymorphism. The compared distribution of the alleles and genotypes of the studied polymorphism was investigated in a Brazilian sample of 235 patients and 834 controls. Genotypic frequencies were in Hardy-Weinberg equilibrium. There was a trend of allelic association between the Taq1A polymorphism (rs1800497) with schizophrenia in the studied sample. However no statistically differences were found between cases and controls when analyzed by gender or schizophrenia subtypes.
DOI: 10.6084/m9.figshare.24185637.v1
title: Data and R codes

description: Data for the manuscript: Double trouble? Behaviour and health of pumpkinseed sunfish influence and are influenced by parasitic co-infectionDetailed information about the archived files is included in the "readme.txt" file.Abstract: Parasitism is increasingly seen as an ecological factor contributing to behavioural variation among individuals. Yet, the causal direction of the relationship between animal personality and parasites remains unclear. We measured behavioural traits (i.e. exploration, activity, boldness) in pumpkinseed sunfish (<i>Lepomis gibbosus</i>) before and after an experimental infection using cages in a lake where sunfish were naturally exposed to cestode and trematode infection for one month. Despite our initial assumptions (i.e. that all individuals have the same risk of infection within a cage), we found that initial behavioural traits strongly influenced infection susceptibility: initially bolder and less active fish acquired a higher density of trematode and cestode parasite during the infection period. Following infection, fish body condition decreased with increasing cestode density, suggesting that infection is costly to hosts. Body condition was positively correlated with distance moved, a measure of activity, regardless of individual infection status. The repeatability of exploration and activity behaviour and the strength of the activity-exploration correlation (i.e. behavioural syndrome) were reduced after experimental infection. Distance moved and trematode density were negatively correlated, suggesting that this infection decreases host activity levels. Since trematodes have a complex life cycle with piscivorous birds as a final host, a decrease in activity following infection may make infected fish more susceptible to bird predation, benefiting the parasite. Our results highlight the close links between behaviour and parasitism. We propose that two mechanisms may simultaneously operate: initial host behaviour influences their risk of infection, and infection can create variation in the behavioural traits of infected hosts.
DOI: 10.6084/m9.figshare.28405142.v1
title: Reproduce "<i>A geometric approach to beta diversity"</i>

description: This folder provides the code and the datasets to reproduce the figures in the manuscript <i>A geometric approach to beta diversity</i>. The key methods are published as an R package (BetaVolume). Here we reproduce the two figures that involve empirical data analysis.
DOI: 10.6084/m9.figshare.28986389.v1
title: Regional division of China's terrestrial ecosystem

description: Based on climate, landform, and topographic characteristics (Fu et al., 2001), China's terrestrial ecosystems were divided into 18 regions.Reference Fu, B. J., Liu, G. H., Ma, K. M., & Li, J. R. (2001). Scheme of ecological regionalization in China. Acta Ecologica Sinica, 21(1), 1–6. (in Chinese)
DOI: 10.6084/m9.figshare.3859719.v2
title: Insect Count and Diversity in a Woodlot using Quadrat Sampling.

description: <b>Meta Data:</b> <b>Replicate:</b> For this lab, there were 25 independent quadrat counts in the woodlot. It is used to show that each row corresponds to a different quadrat. <b>Total Number of Insects Counted:</b> This is a discreet variable. In this experiment, the total number of insects inside a quarter of a quadrat (0.25m<sup>2</sup>) were counted. <b>Number of different Recognizable taxonomic units (rtus):</b> This is a discreet variable. In this experiment, the insect diversity present in each quarter of a quadrant (0.25m<sup>2</sup>) was recorded. This corresponds to the number of different recognizable taxonomic units per sample (i.e. flies, bees, spiders, etc). <b>Equipment utilized:</b> quadrat <b>Methods:</b> The total number of insects and number of different recognizable taxonomic units was observed at the Dandby woodlot area of York University (Keele Campus). Upon arrival, the quadrat was placed at a random location and observations were taken. Consequent observations were performed by moving the quadrat about two meters forward (each time). Furthermore, only a quarter of the quadrat was observed - corresponding to an area of 0.25m<sup>2</sup> (0.5m x 0.5m). This methodology was maintained constant for all the 25 quadrat observations. <b>Study Site: </b>Observations were recorded on Monday, September 26<sup>th</sup>, 2016, between 2:30 and 5:30pm on the Dandby woodlot of York University. The weather was cloudy, with periods of rain. In addition, the temperature was about 18°C. <b>Hypothesis:</b> It was hypothesized that the more insects there are in a sample, the greater the number of different rtus will be. <b>Predictions:</b> 1) Areas with a low number of insects will show a reduced number of different rtus. 2) Areas with a high number of insects will show an increased number of different rtus. 3) Increased sunlight exposure results in an increased number of insects observed, and an increase in the number of different rtus. <b>Group Members:</b> Geeth Raveendhran, and Arnub Shuvo.
DOI: 10.17632/f9w84zr3ng
title: Statistics FLUOR for Bubble DNA Tweezer: A Triple-Conformation Sensor Responsive to Concentration-Ratios

description: All fluorescence statistical data used in the article, "Bubble DNA Tweezer: A Triple-Conformation Sensor Responsive to Concentration-Ratios"
DOI: 10.17632/s5yf8kshg3
title: USPTO renewable energy generation patents

description: USPTO patents corresponding to Y02E 10 subclasses "Energy generation through renewable energy sources" filed from 1973 to 2015. Each patent is categorized according to the seven sources of generation: Geothermal, Hydro, From the sea, Solar thermal, PV, Thermal-PV and Wind.
DOI: 10.17632/tggb5kvj6s
title: UAV Mobility Tracing in 72 Urban Environments

description: This data is collected using Panda5gSim, which is available on GitHub: https://github.com/yemenlinux/panda5gsim

It contains 3D transformations and ray-tracing Line-of-Sight (LoS) conditions between two Unmanned Aerial Vehicles (UAVs) and ten ground mobile users.

The data is collected by generating 72 synthetic urban environments based on ITU-R P.1410 urban configuration.

Number of runs: 3 for each scenario.

Scenario number 1: files started with "no_buildings*"

Scenario number 2: files started with "with_buildings*"

Number of environments in each file: 72.

Each urban environment is simulated for 120 seconds.

Fields:

Column Name : Description

Time : Time stamp 

RxNode : Receiver’s (mobile ground user) name.

TxNode : Transmitter’s or UAV's (airborne access point) name.

RayLoS : Ray-tracing LoS for the omnidirectional antenna.

dRayLoS : Ray-tracing LoS for the 3GPP directional antenna.

nBuildings : Number of buildings between UAV and ground user.

v_rx : Velocity of mobile ground user.

v_tx : Velocity of UAV (airborne access point).

phi : The azimuth (heading) angle between the transmitter and the receiver.

theta : The elevation (pitch) angle between the transmitter and the receiver.

d3D : The direct distance in 3D space between the transmitter and the receiver.

d2D : The horizontal projection of the distance between the transmitter and the receiver.

Gain : The antenna gain for the 3GPP directional antenna is calculated by the relative transformations of the receiver as seen from the transmitter.

Transforms : The transformation tuple. The transformation tuple contains the following: (1) the receiver’s transformation; (2) the transmitter’s transformation; (3) the relative transformation of the receiver as seen from the transmitter; (4) the receiver’s identification; (5) the transmitter’s identification.

h : The height difference between the receiver and the transmitter.

Environment : The environment name is formatted as (Urban\_$\alpha$\_$\beta$\_$\gamma$).
DOI: 10.6084/m9.figshare.19596805.v1
title: Data file for Psychological safety and employee innovation

description: This is a data file for a study on psychological safety and employee innovation
DOI: 10.6084/m9.figshare.24045981.v1
title: G002_SupplementaryData

description: Dataset and statistical analysis for the paper "Robust Control Chart Application in Semiconductor Manufacturing Process" submitted to ICoAIMS 2023: 4th International Conference on Applied & Industrial Mathematics and Statistics 2023.
DOI: 10.6084/m9.figshare.26319061.v1
title: PVA hydrogel data set.xlsx

description: Hydrogel materials have a variety of applications, ranging from biomedical materials tissues and drug delivery systems, to their employment as immobilisation matrices in bioprocessing applications. Polyvinyl alcohol (PVA) is a synthetic, water-soluble and biocompatible polymer denoted by the general formula [CH2CH(OH)]n. Due to its physical properties when gelled, this polymer has been highlighted itself as a suitable candidate for application in the bioprocessing industry as an immobilisation matrix for microorganisms. This study aims to investigates the effects which of using various polyols as co-solvent have on the gelation of PVA-based hydrogels formed at ambient conditions, and their resulting properties. In addition to glycerol, previously known for its capabilities to induce improve gelation when used as co-solvent, polyols including erythritol (C4H10O4), xylitol (C5H12O5) and sorbitol (C6H14O6) were investigated. The key physical properties of these the resulting PVA-based hydrogels were investigated, including: transparency; tensile and compressive strengths; diffusion coefficients; rates of gelation; and method of gelation. It was determined that these hydrogels are formed through physical crosslinking rather than chemical crosslinking. The glycerol-PVA hydrogels tended to exhibit more suitable properties for application in the immobilisation of photosynthetic organisms, although the difference in properties between the glycerol-PVA, xylitol-PVA and sorbitol-PVA hydrogels were comparable and often not significantly different after rehydration. This investigation showed that through the addition of simple polyols, solid PVA-based hydrogels could be formed at ambient conditions without the requirement of toxic cytotoxic chemicals, harsh gelation conditions or unfavourable intermediate chemicals.
DOI: 10.6084/m9.figshare.26839843.v1
title: WB images.zip

description: EGR1 production western blots in response to <i>Candida albicans</i> infection of epithelial cells.
DOI: 10.6084/m9.figshare.97068.v1
title: The clinical characteristics of 57 patients with CVID

description: The data file “The clinical characteristics of 57 patients with CVID” contains the significant features of common variable immunodeficiency in adults. The early clinical signs and main clinical manifestations of this primary immunodeficiency were gathered during 21 years of observation of such patients in Moscow