cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.y9ne27
title: Occurrence Download

description: A dataset listing the 97 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaphomycetaceae"
 ]
}

 The dataset's 97 records were derived from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277713-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.15079855.v1
title: Additional file 10 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 10. Classification of differentially expressed transcription factors.
DOI: 10.6084/m9.figshare.15079858
title: Additional file 11 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 11. Table head design of L16(45) orthogonal experiment for PLB proliferation.
DOI: 10.6084/m9.figshare.15079858.v1
title: Additional file 11 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 11. Table head design of L16(45) orthogonal experiment for PLB proliferation.
DOI: 10.6084/m9.figshare.15079861
title: Additional file 12 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 12. Enzymes involved in polysaccharide, alkaloid and flavonoid biosynthesis encoded by putative genes in corresponding pathways.
DOI: 10.21233/phqj-6390
title: PB05 pollen surface sample dataset

description: Raw data for the PB05 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.15079861.v1
title: Additional file 12 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 12. Enzymes involved in polysaccharide, alkaloid and flavonoid biosynthesis encoded by putative genes in corresponding pathways.
DOI: 10.21233/p9se-da06
title: PB06 pollen surface sample dataset

description: Raw data for the PB06 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.25500/edata.bham.00001068
title: Research data supporting the publication “Azophosphines: Synthesis, Structure and Coordination Chemistry”
DOI: 10.6084/m9.figshare.15079864
title: Additional file 13 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 13. Gene descriptions and primers used for RT-qPCR.
DOI: 10.21233/tpfb-8p89
title: Phred pollen surface sample dataset

description: Raw data for the Phred pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/40qh-7945
title: RB03A pollen surface sample dataset

description: Raw data for the RB03A pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.15079855
title: Additional file 10 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 10. Classification of differentially expressed transcription factors.
DOI: 10.21233/zn4r-cr54
title: Lost Chicken Creek vertebrate fauna dataset

description: Raw data for the Lost Chicken Creek vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/z2t0-7q38
title: Kirche site vertebrate fauna dataset

description: Raw data for the Kirche site vertebrate fauna dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/q9jk-gx31
title: Blatenská slať pollen dataset

description: Raw data for the Blatenská slať pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/485m-s622
title: Blatenská slať charcoal dataset

description: Raw data for the Blatenská slať charcoal dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.13507038
title: Additional file 3 of Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder

description: Additional file 3: Please refer to the Excel file Supplemental_tables.xlsx.
DOI: 10.6084/m9.figshare.15079906
title: Additional file 9 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 9. Putative genes involved in downstream pathways of polysaccharides and alkaloids biosynthesis.
DOI: 10.21233/3fjd-1c35
title: Blatenská slať X-ray fluorescence (XRF) dataset

description: Raw data for the Blatenská slať X-ray fluorescence (XRF) dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.13507038.v1
title: Additional file 3 of Natural language processing (NLP) tools in extracting biomedical concepts from research articles: a case study on autism spectrum disorder

description: Additional file 3: Please refer to the Excel file Supplemental_tables.xlsx.
DOI: 10.21233/0b9q-dv84
title: Blatenská slať plant macrofossil dataset

description: Raw data for the Blatenská slať plant macrofossil dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/mwxe-v591
title: Badu 15 pollen dataset

description: Raw data for the Badu 15 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/s36n-s730
title: Blatenská slať paleomagnetic dataset

description: Raw data for the Blatenská slať paleomagnetic dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/gssm-s595
title: Blatenská slať plant macrofossil dataset

description: Raw data for the Blatenská slať plant macrofossil dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/6x1j-5z57
title: Blatenská slať insect dataset

description: Raw data for the Blatenská slať insect dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.7215611
title: Propofol attenuates sepsis-induced acute kidney injury by regulating miR-290-5p/CCL-2 signaling pathway

description: Previous studies have indicated that propofol has immunomodulatory and antioxidative properties. However, the renoprotection effect and the precise mechanisms of propofol in sepsis-induced renal injury remain unclear. The purpose of the present study was to investigate the role of miR-290-5p/CCL-2 signaling in septic mice treatment with propofol. Mice were treated with propofol (50 mg/kg) twice within 24 h. Survival outcome was monitored within 48 h. The mRNA and protein levels were assayed by qRT-PCR and western blotting, respectively. Mouse podocytes (MPC5) were treated with lipopolysaccharide (LPS) to establish the cell model in vitro. The proliferation of MPC5 was monitored using the MTS assay. Cell apoptosis was analyzed by flow cytometry. Propofol improved survival outcome and alleviated acute kidney injury in cecal ligation and puncture-operated mice. Propofol increased miR-290-5p expression and decreased CCL-2 and inflammatory cytokines levels in the kidney for septic mice. We found that miR-290-5p was a direct regulator of CCL-2 in MPC5. Propofol could abrogate LPS-induced growth inhibition and apoptosis in MPC5. Meanwhile, propofol inhibited CCL-2 expression in LPS-treated MPC5, however, knockdown of miR-290-5p abrogated the inhibitory effect propofol on the mRNA and protein expressions of CCL-2. Propofol could serve as an effective therapeutic medication to suppress sepsis-induced renal injury in vivo and in vitro by regulating the miR-290-5p/CCL-2 signaling pathway.
DOI: 10.21233/z9sh-ra70
title: Lake Pasture pollen dataset

description: Raw data for the Lake Pasture pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.7215611.v1
title: Propofol attenuates sepsis-induced acute kidney injury by regulating miR-290-5p/CCL-2 signaling pathway

description: Previous studies have indicated that propofol has immunomodulatory and antioxidative properties. However, the renoprotection effect and the precise mechanisms of propofol in sepsis-induced renal injury remain unclear. The purpose of the present study was to investigate the role of miR-290-5p/CCL-2 signaling in septic mice treatment with propofol. Mice were treated with propofol (50 mg/kg) twice within 24 h. Survival outcome was monitored within 48 h. The mRNA and protein levels were assayed by qRT-PCR and western blotting, respectively. Mouse podocytes (MPC5) were treated with lipopolysaccharide (LPS) to establish the cell model in vitro. The proliferation of MPC5 was monitored using the MTS assay. Cell apoptosis was analyzed by flow cytometry. Propofol improved survival outcome and alleviated acute kidney injury in cecal ligation and puncture-operated mice. Propofol increased miR-290-5p expression and decreased CCL-2 and inflammatory cytokines levels in the kidney for septic mice. We found that miR-290-5p was a direct regulator of CCL-2 in MPC5. Propofol could abrogate LPS-induced growth inhibition and apoptosis in MPC5. Meanwhile, propofol inhibited CCL-2 expression in LPS-treated MPC5, however, knockdown of miR-290-5p abrogated the inhibitory effect propofol on the mRNA and protein expressions of CCL-2. Propofol could serve as an effective therapeutic medication to suppress sepsis-induced renal injury in vivo and in vitro by regulating the miR-290-5p/CCL-2 signaling pathway.
DOI: 10.6084/m9.figshare.15079906.v1
title: Additional file 9 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 9. Putative genes involved in downstream pathways of polysaccharides and alkaloids biosynthesis.
DOI: 10.21233/fh6f-er46
title: Meadow Canyon pollen dataset

description: Raw data for the Meadow Canyon pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/g6eb-4n68
title: Meadow Canyon Cliff Middens pollen dataset

description: Raw data for the Meadow Canyon Cliff Middens pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.15079897
title: Additional file 7 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 7. Information for differentially expressed genes.
DOI: 10.21233/gfb5-1d58
title: Blatenská slať loss-on-ignition dataset

description: Raw data for the Blatenská slať loss-on-ignition dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.15079897.v1
title: Additional file 7 of Putative genes in alkaloid biosynthesis identified in Dendrobium officinale by correlating the contents of major bioactive metabolites with genes expression between Protocorm-like bodies and leaves

description: Additional file 7. Information for differentially expressed genes.
DOI: 10.21233/rhyz-x152
title: Meadow Canyon Terrace Middens pollen dataset

description: Raw data for the Meadow Canyon Terrace Middens pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.5519/qd.yp4q35th
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.21233/t6gw-et96
title: Canyon Meadow Floodplain Middens pollen dataset

description: Raw data for the Canyon Meadow Floodplain Middens pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.11409933
title: Graph-Assisted Inverse Regression for Count Data and Its Application to Sequencing Data

description: Multivariate count data, such as sequencing reads in genomics, are often connected to a clinical phenotype of interest. We develop a flexible framework for dimension reduction in regression, with predictors that are correlated counts, by modeling the conditional distribution of the predictors, given the response, using a pairwise Poisson graphical model. This new framework, called network-based inverse regression for counts, allows us to derive a sufficient reduction of the predictors, while adjusting for the dependence structure among them. We propose a regularized criterion for estimating both the reduction structure and the network structure. The estimation algorithm can be implemented efficiently on a parallel computer. We also introduce an adaptive version and a sparse variant of the proposed procedure. The methods are evaluated on simulated data and are applied to a gut microbiome sequencing dataset. Supplementary materials for this article are available online.
DOI: 10.21233/z4dn-8139
title: Beaver Pond pollen dataset

description: Raw data for the Beaver Pond pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/zby1-ka78
title: Beaver Pond charcoal dataset

description: Raw data for the Beaver Pond charcoal dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.11409933.v1
title: Graph-assisted inverse regression for count data and its application to sequencing data

description: Multivariate count data, such as sequencing reads in genomics, are often connected to a clinical phenotype of interest. We develop a flexible framework for dimension reduction in regression, with predictors that are correlated counts, by modelling the conditional distribution of the predictors, given the response, using a pairwise Poisson graphical model. This new framework, called Network-based Inverse Regression for Counts (NIRC), allows us to derive a sufficient reduction of the predictors, while adjusting for the dependence structure among them. We propose a regularized criterion for estimating both the reduction structure and the network structure. The estimation algorithm can be implemented efficiently on a parallel computer. We also introduce an adaptive version and a sparse variant of the proposed procedure. The methods are evaluated on simulated data, and are applied to a gut microbiome sequencing data set. Supplemental materials for the article are available online.
DOI: 10.21233/q0sa-e562
title: Gull Lake diatom dataset

description: Raw data for the Gull Lake diatom dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.11409933.v2
title: Graph-Assisted Inverse Regression for Count Data and Its Application to Sequencing Data

description: Multivariate count data, such as sequencing reads in genomics, are often connected to a clinical phenotype of interest. We develop a flexible framework for dimension reduction in regression, with predictors that are correlated counts, by modeling the conditional distribution of the predictors, given the response, using a pairwise Poisson graphical model. This new framework, called network-based inverse regression for counts, allows us to derive a sufficient reduction of the predictors, while adjusting for the dependence structure among them. We propose a regularized criterion for estimating both the reduction structure and the network structure. The estimation algorithm can be implemented efficiently on a parallel computer. We also introduce an adaptive version and a sparse variant of the proposed procedure. The methods are evaluated on simulated data and are applied to a gut microbiome sequencing dataset. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.11409933.v3
title: Graph-Assisted Inverse Regression for Count Data and Its Application to Sequencing Data

description: Multivariate count data, such as sequencing reads in genomics, are often connected to a clinical phenotype of interest. We develop a flexible framework for dimension reduction in regression, with predictors that are correlated counts, by modeling the conditional distribution of the predictors, given the response, using a pairwise Poisson graphical model. This new framework, called network-based inverse regression for counts, allows us to derive a sufficient reduction of the predictors, while adjusting for the dependence structure among them. We propose a regularized criterion for estimating both the reduction structure and the network structure. The estimation algorithm can be implemented efficiently on a parallel computer. We also introduce an adaptive version and a sparse variant of the proposed procedure. The methods are evaluated on simulated data and are applied to a gut microbiome sequencing dataset. Supplementary materials for this article are available online.
DOI: 10.21233/cg6t-mj34
title: Gull Lake diatom dataset

description: Raw data for the Gull Lake diatom dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/042c-9z46
title: Gull Lake diatom dataset

description: Raw data for the Gull Lake diatom dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/mcc3-3e28
title: Zarishat Fen pollen dataset

description: Raw data for the Zarishat Fen pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/weev-sv26
title: Zarishat Fen charcoal dataset

description: Raw data for the Zarishat Fen charcoal dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/etch-h535
title: Allenberg Bog pollen surface sample dataset

description: Raw data for the Allenberg Bog pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/w1wx-5850
title: ARCH18 pollen surface sample dataset

description: Raw data for the ARCH18 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/tz75-9922
title: ARCH23 pollen surface sample dataset

description: Raw data for the ARCH23 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/0ej0-e250
title: ARCH24 pollen surface sample dataset

description: Raw data for the ARCH24 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/pdy8-js69
title: ARCH35 pollen surface sample dataset

description: Raw data for the ARCH35 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/mv5j-ze82
title: June Lake diatom dataset

description: Raw data for the June Lake diatom dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.21371469
title: Nitrogen fertilizers use in China from 1952 to 2018

description:  The annual N fertilizers use dataset in China at 5 km × 5 km resolution covering the period of 1952 to 2018. Unit: g N m-2 yr-1. Format: ENVI/IDL data file format.
DOI: 10.21233/e5c3-5550
title: Bar20 pollen dataset

description: Raw data for the Bar20 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/8821-kn98
title: Waruid pollen dataset

description: Raw data for the Waruid pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/1sw4-2p66
title: Gallahers Swamp pollen dataset

description: Raw data for the Gallahers Swamp pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.17701477
title: Additional file 3 of Cobolt: integrative analysis of multimodal single-cell sequencing data

description: Additional file 3 Table S1. CSV file containing the cell clustering of the mouse cortex data integration.
DOI: 10.21233/bnce-y136
title: Pay Hassal mire microcharcoal dataset

description: Raw data for the Pay Hassal mire microcharcoal dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/rrnj-5m10
title: Pay Hassal mire biomarker dataset

description: Raw data for the Pay Hassal mire biomarker dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.17701477.v1
title: Additional file 3 of Cobolt: integrative analysis of multimodal single-cell sequencing data

description: Additional file 3 Table S1. CSV file containing the cell clustering of the mouse cortex data integration.
DOI: 10.6084/m9.figshare.17701480
title: Additional file 4 of Cobolt: integrative analysis of multimodal single-cell sequencing data

description: Additional file 4 Table S2. CSV file containing the cell clustering of the 10X PBMC integration.
DOI: 10.21233/4kjj-h181
title: Pay Hassal mire pollen dataset

description: Raw data for the Pay Hassal mire pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.17701480.v1
title: Additional file 4 of Cobolt: integrative analysis of multimodal single-cell sequencing data

description: Additional file 4 Table S2. CSV file containing the cell clustering of the 10X PBMC integration.
DOI: 10.21233/rjwj-k958
title: CARS0 pollen dataset

description: Raw data for the CARS0 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/3v5f-m303
title: CARS1 pollen dataset

description: Raw data for the CARS1 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/kyfb-rq13
title: CARS2 pollen dataset

description: Raw data for the CARS2 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/fy05-2877
title: CARS3 pollen dataset

description: Raw data for the CARS3 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/b1nd-b252
title: CARS4 pollen dataset

description: Raw data for the CARS4 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/r4zf-vs45
title: CARS5 pollen dataset

description: Raw data for the CARS5 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/1t4w-6k18
title: CARS7 pollen dataset

description: Raw data for the CARS7 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/ee1t-dw66
title: CARS8 pollen dataset

description: Raw data for the CARS8 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.6084/m9.figshare.25267402
title: Dengue Virus Serotypes in Mexico 2023

description: Database of PCR results for dengue with serotypes from the Mexican population with social security during 2023.
DOI: 10.21233/f9dt-6y21
title: CARS9 pollen dataset

description: Raw data for the CARS9 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/9fwd-fx89
title: CARS10 pollen dataset

description: Raw data for the CARS10 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/aprf-eh46
title: CARS11 pollen dataset

description: Raw data for the CARS11 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/8vre-nb34
title: CARS12 pollen dataset

description: Raw data for the CARS12 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/38e2-vy50
title: CHEL1 pollen dataset

description: Raw data for the CHEL1 pollen dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/2tm4-p581
title: CHEL2 pollen surface sample dataset

description: Raw data for the CHEL2 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/61r0-t468
title: CHEL4 pollen surface sample dataset

description: Raw data for the CHEL4 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/627z-dw39
title: CHEL5 pollen surface sample dataset

description: Raw data for the CHEL5 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.
DOI: 10.21233/37gp-8305
title: CHEL6 pollen surface sample dataset

description: Raw data for the CHEL6 pollen surface sample dataset obtained from the Neotoma Paleoecology Database.