cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16414459
title: Comprehensive checklist of native, endemic, and subendemic tree species in the Caribbean Island Biodiversity Hotspot

description: This dataset presents a curated inventory of tree species native to the Caribbean Islands Biodiversity Hotspot, a region recognized for its exceptional plant diversity and endemism, including endemic and subendemic taxa. Stretching from southern Florida to northeastern Venezuela, the hotspot encompasses a wide array of island groups including the Lucayan Archipelago (The Bahamas and Turks and Caicos), the Greater Antilles (Cuba, Hispaniola, Jamaica, Puerto Rico, and surrounding islands), and the Lesser Antilles (from Anguilla to Grenada). It also includes islands near the continental margins of the Caribbean Sea such as Aruba, Bonaire, Curaçao, the Venezuelan Antilles, Trinidad & Tobago, and Southwest Caribbean (the Caribbean islands of Belize, Honduras, Mexico, Colombia, Nicaragua and Panama). 

In this dataset, the term "tree" refers to perennial woody plants that typically grow with a single trunk and branching canopy, reaching a minimum height of three meters under natural conditions. This definition includes palms, tree ferns, arborescent cacti, and species with dual growth forms that occur both as trees and shrubs. The classification of species into native, endemic, and subendemic categories is based on their known botanical distributions. Endemic species are those confined to the Caribbean Islands Biodiversity Hotspot, including nearby continental islands such as Trinidad and Tobago. Subendemic species are primarily found in the Caribbean islands but also extend into adjacent continental zones, including southern Florida, coastal Venezuela and Colombia, and parts of Mesoamerica such as Belize, Guatemala, and southeastern Mexico. The dataset distinguishes between single-island endemics, multiple-island endemics, and subendemics to reflect varying degrees of geographic restriction.

This dataset compiles a comprehensive checklist of 3,442 native tree taxa documented across the Caribbean Islands Biodiversity Hotspot. It is organized into three Excel files:



Native Trees – Includes all 3442 tree taxa recorded as native to the region, with taxonomic details and distribution notes.

Endemic Trees – Focuses on 2412 species restricted to the Caribbean islands, categorized by single-island and multiple-island endemism, contributing by 70 % of the total tree flora in the region.

Subendemic Trees – Lists 261 species that occur in both the Caribbean islands and adjacent continental areas, highlighting transitional biogeographic patterns.


The data were compiled from a range of sources including herbarium records, floristic inventories, global databases, published literature, field surveys and expert contributions. This resource supports ecological research, conservation planning, and biodiversity assessments by providing a detailed and up-to-date reference on the tree flora of one of the world’s most important biodiversity hotspots.
DOI: 10.5281/zenodo.16414460
title: Comprehensive checklist of native, endemic, and subendemic tree species in the Caribbean Island Biodiversity Hotspot

description: This dataset presents a curated inventory of tree species native to the Caribbean Islands Biodiversity Hotspot, a region recognized for its exceptional plant diversity and endemism, including endemic and subendemic taxa. Stretching from southern Florida to northeastern Venezuela, the hotspot encompasses a wide array of island groups including the Lucayan Archipelago (The Bahamas and Turks and Caicos), the Greater Antilles (Cuba, Hispaniola, Jamaica, Puerto Rico, and surrounding islands), and the Lesser Antilles (from Anguilla to Grenada). It also includes islands near the continental margins of the Caribbean Sea such as Aruba, Bonaire, Curaçao, the Venezuelan Antilles, Trinidad & Tobago, and Southwest Caribbean (the Caribbean islands of Belize, Honduras, Mexico, Colombia, Nicaragua and Panama). 

In this dataset, the term "tree" refers to perennial woody plants that typically grow with a single trunk and branching canopy, reaching a minimum height of three meters under natural conditions. This definition includes palms, tree ferns, arborescent cacti, and species with dual growth forms that occur both as trees and shrubs. The classification of species into native, endemic, and subendemic categories is based on their known botanical distributions. Endemic species are those confined to the Caribbean Islands Biodiversity Hotspot, including nearby continental islands such as Trinidad and Tobago. Subendemic species are primarily found in the Caribbean islands but also extend into adjacent continental zones, including southern Florida, coastal Venezuela and Colombia, and parts of Mesoamerica such as Belize, Guatemala, and southeastern Mexico. The dataset distinguishes between single-island endemics, multiple-island endemics, and subendemics to reflect varying degrees of geographic restriction.

This dataset compiles a comprehensive checklist of 3,442 native tree taxa documented across the Caribbean Islands Biodiversity Hotspot. It is organized into three Excel files:



Native Trees – Includes all 3442 tree taxa recorded as native to the region, with taxonomic details and distribution notes.

Endemic Trees – Focuses on 2412 species restricted to the Caribbean islands, categorized by single-island and multiple-island endemism, contributing by 70 % of the total tree flora in the region.

Subendemic Trees – Lists 261 species that occur in both the Caribbean islands and adjacent continental areas, highlighting transitional biogeographic patterns.


The data were compiled from a range of sources including herbarium records, floristic inventories, global databases, published literature, field surveys and expert contributions. This resource supports ecological research, conservation planning, and biodiversity assessments by providing a detailed and up-to-date reference on the tree flora of one of the world’s most important biodiversity hotspots.
DOI: 10.5281/zenodo.18802933
title: Cartographie de l'occupation et usage des sols pour la Région de la Mé en 2025

description: Cartographie de l'occupation du sol pour la Région de la Mé en Côte d'Ivoire pour l'année 2025.

Projection : WGS84 UTM 30 NRésolution : 10 mMethodologie : Cartographie supervisée par random Forest et données satellitaires embeddings.Précision de la carte au niveau 1 : 88,7%Pour plus d'information sur la méthodologie veuillez vous référer au document technique dans l'archive :"Rapport_Ocsol_PRM2_2025_VF.pdf"
DOI: 10.5281/zenodo.18803153
title: East Asian Prehistoric Anthropomorphic Jade Artifact Specimen 10 (EANJ_FIGURE_10):
Digital Visual Documentation (Low-Resolution Public Preview)

description: I. Scope and Purpose

This dataset documents a single East Asian prehistoric anthropomorphic jade artifact (EANJ_FIGURE_10) through multi-view visual records. It constitutes one individual specimen within a systematic digital archiving project composed of multiple anthropomorphic-form artifacts and forms part of an ongoing and expandable data collection.

The purpose of this record is to provide independently verifiable foundational visual materials for relevant research fields through standardized image acquisition and organization, serving as an objective reference base for subsequent scholarly work.

Provided that researchers independently establish clearly defined research questions and methodological frameworks, this dataset may be used to support cross-comparative morphological analysis, teaching demonstrations, and non-invasive re-analytical studies based on visual data.

Access Note:This record is released as a low-resolution public preview. The complete high-resolution original image dataset (approximately 42 megapixels per image), designated as Record B, has been published separately under restricted access. Researchers may submit access requests via the following DOI:https://doi.org/10.5281/zenodo.18802851

 

II. Academic Neutrality and Non-Interpretive Disclaimer

This dataset adheres to the principle of non-interpretive description, aiming to ensure scientific neutrality and methodological transparency throughout the documentation process.

All textual descriptions and image annotations are strictly limited to directly observable phenomena and do not constitute, imply, or suggest any archaeological attribution, cultural classification, chronological determination, or historical contextualization.

This record does not address or evaluate the artifact’s provenance, functional interpretation, academic significance, or commercial value, nor does it constitute any form of conclusive or authoritative statement.
DOI: 10.5281/zenodo.18803154
title: East Asian Prehistoric Anthropomorphic Jade Artifact Specimen 10 (EANJ_FIGURE_10):
Digital Visual Documentation (Low-Resolution Public Preview)

description: I. Scope and Purpose

This dataset documents a single East Asian prehistoric anthropomorphic jade artifact (EANJ_FIGURE_10) through multi-view visual records. It constitutes one individual specimen within a systematic digital archiving project composed of multiple anthropomorphic-form artifacts and forms part of an ongoing and expandable data collection.

The purpose of this record is to provide independently verifiable foundational visual materials for relevant research fields through standardized image acquisition and organization, serving as an objective reference base for subsequent scholarly work.

Provided that researchers independently establish clearly defined research questions and methodological frameworks, this dataset may be used to support cross-comparative morphological analysis, teaching demonstrations, and non-invasive re-analytical studies based on visual data.

Access Note:This record is released as a low-resolution public preview. The complete high-resolution original image dataset (approximately 42 megapixels per image), designated as Record B, has been published separately under restricted access. Researchers may submit access requests via the following DOI:https://doi.org/10.5281/zenodo.18802851

 

II. Academic Neutrality and Non-Interpretive Disclaimer

This dataset adheres to the principle of non-interpretive description, aiming to ensure scientific neutrality and methodological transparency throughout the documentation process.

All textual descriptions and image annotations are strictly limited to directly observable phenomena and do not constitute, imply, or suggest any archaeological attribution, cultural classification, chronological determination, or historical contextualization.

This record does not address or evaluate the artifact’s provenance, functional interpretation, academic significance, or commercial value, nor does it constitute any form of conclusive or authoritative statement.
DOI: 10.15468/dl.pu24kg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "DistanceFromCentroidInMeters is greater than or equal to 2000",
 "Geometry POLYGON ((105.610544 14.999999, 179.999961 14.999999, 179.999961 65.08290100000001, 105.610544 65.08290100000001, 105.610544 14.999999))",
 "TaxonKey is Neolamprologus longior"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002211-260226173443078/datasets/export for details.
DOI: 10.15468/dl.dmkrtq
title: Occurrence Download

description: A dataset containing 68199 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "TaxonKey is one of (Popillia japonica)",
 "TaxonomicStatus is one of (Accepted, Synonym)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than 1980",
 "CoordinateUncertaintyInMeters is less than or equal to 9275"
 ]
}

 The dataset includes 68199 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002183-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8uewj6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mesoplodon eueu)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002214-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18802989
title: Image Cytometry and Kinetic Modelling Reveal How Aged Leaf Biomass Dose Regulates Microbial Physiology and PAH Degradation

description: Imaging Cytometry and Kinetic Modelling Repository

This repository contains the complete processed dataset, trained machine learning models, and reproducible analysis framework supporting the study:

“Image Cytometry and Kinetic Modelling Reveal How Aged Leaf Biomass Dose Regulates Microbial Physiology and PAH Degradation.”

Study Overview

This dataset integrates:





First-order PAH degradation kinetics




Imaging flow cytometry–derived single-cell morphological features




Supervised machine learning classification of microbial physiological states




Probability calibration and deployment thresholds



The repository enables full reproduction of:





Viable vs debris classification




Single vs aggregate discrimination




Fluorescence-defined state classification




Morphology–kinetic correlation analyses



Repository Contents





✔ Processed feature dataset (~4.5 × 10⁵ segmented cellular objects)




✔ Trained models (.joblib)




✔ Threshold calibration file




✔ Inference script (predict.py)




✔ Reliability calibration outputs




✔ Version-locked dependency file



Computational Environment





Python 3.11




scikit-learn 1.4.2




NumPy 1.26




Pandas 2.2




Matplotlib 3.8



Purpose

This repository provides a reproducible framework linking amendment dosage, microbial physiological integrity, and PAH degradation kinetics through morphology-derived phenotyping.
DOI: 10.5281/zenodo.18802988
title: Image Cytometry and Kinetic Modelling Reveal How Aged Leaf Biomass Dose Regulates Microbial Physiology and PAH Degradation

description: Imaging Cytometry and Kinetic Modelling Repository

This repository contains the complete processed dataset, trained machine learning models, and reproducible analysis framework supporting the study:

“Image Cytometry and Kinetic Modelling Reveal How Aged Leaf Biomass Dose Regulates Microbial Physiology and PAH Degradation.”

Study Overview

This dataset integrates:





First-order PAH degradation kinetics




Imaging flow cytometry–derived single-cell morphological features




Supervised machine learning classification of microbial physiological states




Probability calibration and deployment thresholds



The repository enables full reproduction of:





Viable vs debris classification




Single vs aggregate discrimination




Fluorescence-defined state classification




Morphology–kinetic correlation analyses



Repository Contents





✔ Processed feature dataset (~4.5 × 10⁵ segmented cellular objects)




✔ Trained models (.joblib)




✔ Threshold calibration file




✔ Inference script (predict.py)




✔ Reliability calibration outputs




✔ Version-locked dependency file



Computational Environment





Python 3.11




scikit-learn 1.4.2




NumPy 1.26




Pandas 2.2




Matplotlib 3.8



Purpose

This repository provides a reproducible framework linking amendment dosage, microbial physiological integrity, and PAH degradation kinetics through morphology-derived phenotyping.
DOI: 10.5281/zenodo.18803145
title: LINF_340023400

description: Amastin; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.18803146
title: LINF_340023400

description: Amastin; Leishmania infantum (strain JPCM5)
DOI: 10.15468/dl.y8gcrh
title: Occurrence Download

description: A dataset containing 124514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Bidens frondosa, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Bidens frondosa, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , Bidens frondosa, , , , , , , , , Calycomyza avira, , , Phytomyza syngenesiae, Liriomyza carphephori, , , , Bombus sichelii, Bidens anomala, , , Bidens melanocarpa, , , , , , , , , )",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 124514 records from 1270 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002144-260226173443078/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id124999.1
title: StrainInfo SI-ID 124999.1

description: StrainInfo dataset 124999 about a strain of Westerdykella globosa. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125000.1
title: StrainInfo SI-ID 125000.1

description: StrainInfo dataset 125000 about a strain of Arthroderma vespertilii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.23twfj
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Centaurea involucrata Desf.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 119 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080349-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id125001.1
title: StrainInfo SI-ID 125001.1

description: StrainInfo dataset 125001 about a strain of Arthroderma vespertilii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125048.1
title: StrainInfo SI-ID 125048.1

description: StrainInfo dataset 125048 about a strain of Melampsora epiphylla. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125049.1
title: StrainInfo SI-ID 125049.1

description: StrainInfo dataset 125049 about a strain of Melampsora epiphylla. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125050.1
title: StrainInfo SI-ID 125050.1

description: StrainInfo dataset 125050 about a strain of Melampsora epitea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125051.1
title: StrainInfo SI-ID 125051.1

description: StrainInfo dataset 125051 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125142.1
title: StrainInfo SI-ID 125142.1

description: StrainInfo dataset 125142 about a strain of Colletotrichum acutatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.kl5xbc
title: Occurrence Download

description: A dataset containing 570 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Lorisidae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 570 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019480-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id125143.1
title: StrainInfo SI-ID 125143.1

description: StrainInfo dataset 125143 about a strain of Colletotrichum acutatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125144.1
title: StrainInfo SI-ID 125144.1

description: StrainInfo dataset 125144 about a strain of Colletotrichum acutatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125145.1
title: StrainInfo SI-ID 125145.1

description: StrainInfo dataset 125145 about a strain of Colletotrichum acutatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125002.1
title: StrainInfo SI-ID 125002.1

description: StrainInfo dataset 125002 about a strain of Discosia tricellularis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125003.1
title: StrainInfo SI-ID 125003.1

description: StrainInfo dataset 125003 about a strain of Discosia tricellularis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125004.1
title: StrainInfo SI-ID 125004.1

description: StrainInfo dataset 125004 about a strain of Discosia tricellularis. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id125005.1
title: StrainInfo SI-ID 125005.1

description: StrainInfo dataset 125005 about a strain of Saprolegnia parasitica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.