cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.97051
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 5/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 5/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97048
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 2/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 2/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97049.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 3/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 3/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97050.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 4/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 4/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97051.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 5/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 5/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97047
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 1/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 1/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97048.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 2/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 2/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97045
title: D2O Yeast Adaptation Growth Comparison

description: Included in this set is a graph (.png) and the data (.xlsx) used to generate the graph. The graph compares the growth of yeast in D2O at 3 different dates: Day 1, Day 6, and Day 33 of the adaptation experiment. Each data set is from the time trials conducted on those dates. So the data shown above is a comparison of the hourly yeast growth of those three different dates. Interpretations of the data can be found in the links below along with the entire research record of the experiment.
DOI: 10.6084/m9.figshare.97047.v1
title: Gliding motility assay using 8mM D2O in solution. Replicate 1/3. ROI 1/15.

description: • This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. • The buffer used was PEM (also known as BRB80) with the inclusion of 8mM D2O. • Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. • This fileset is replicate 1/3 and ROI 1/15. • Images were taken to investigate speed variations of microtubules due to the inclusion of D2O in the motility assay. • The temperature of the slide was held constant at 32°C by an objective heater. Early ROIs, i.e. 1-5, have slower giding speeds due to the increasing temperature of the slide which, was prepared at room temperature before observation. After ROI 5 the gliding speed stabilizes. • Pixels lengths were measured to be 166nm/pixel using a stage micrometer. • After the files have downloaded, a simple command line entry will convert the images to a movie. Mencoder must be installed. ls &gt; list.txt | mencoder mf://@list.txt -mf w=496:h=658:fps=30:type=png -ovc lavc -lavcopts vcodec=mpeg4:mbd=2:trell -o output.avi • Upload of these files were made possible through the figshare API.
DOI: 10.6084/m9.figshare.97016
title: Vividness of mental imagery questionairre (VVIQ)

description: This is a computer based Vividness of mental imagery questionairre (VVIQ) [1]. The VVIQ is designed in Millisecond Inquisit software so you will need to install Inquisit on the PC you want to run this IAT on. The VVIQ is immediately followed by a demographic questionnaire. Download VVIQ References[1]D F Marks. Visual imagery differences in the recall of pictures. British journal of psychology London England 1973, 64(1):17–24, 1973 If you have any problems running this VVIQ, send me an email.
DOI: 10.6084/m9.figshare.97045.v1
title: D2O Yeast Adaptation Growth Comparison

description: Included in this set is a graph (.png) and the data (.xlsx) used to generate the graph. The graph compares the growth of yeast in D2O at 3 different dates: Day 1, Day 6, and Day 33 of the adaptation experiment. Each data set is from the time trials conducted on those dates. So the data shown above is a comparison of the hourly yeast growth of those three different dates. Interpretations of the data can be found in the links below along with the entire research record of the experiment.
DOI: 10.6084/m9.figshare.97009
title: Multilanguage Implicit Association Test (IAT) for measuring agression

description: This is a computer based Implicit Association Test for measuring aggression. The IAT is designed in Millisecond Inquisit software so you will need to install Inquisit on the PC you want to run this IAT on. This particular IAT can be conducted in three different languages i.e. German, Dutch and English. The IAT is immediately followed by a demographic questionnaire.If you have any problems running this IAT, send me an email. The following paper has more details on this particular IAT.Effect of music tempo in First-Person Shooter on arousal and aggressionSee my profile to download this paper.
DOI: 10.6084/m9.figshare.97016.v1
title: Vividness of mental imagery questionairre (VVIQ)

description: This is a computer based Vividness of mental imagery questionairre (VVIQ) [1]. The VVIQ is designed in Millisecond Inquisit software so you will need to install Inquisit on the PC you want to run this IAT on. The VVIQ is immediately followed by a demographic questionnaire. Download VVIQ References[1]D F Marks. Visual imagery differences in the recall of pictures. British journal of psychology London England 1973, 64(1):17–24, 1973 If you have any problems running this VVIQ, send me an email.
DOI: 10.6084/m9.figshare.97009.v1
title: Multilanguage Implicit Association Test (IAT) for measuring agression

description: This is a computer based Implicit Association Test for measuring aggression. The IAT is designed in Millisecond Inquisit software so you will need to install Inquisit on the PC you want to run this IAT on. This particular IAT can be conducted in three different languages i.e. German, Dutch and English. The IAT is immediately followed by a demographic questionnaire.If you have any problems running this IAT, send me an email. The following paper has more details on this particular IAT.Effect of music tempo in First-Person Shooter on arousal and aggressionSee my profile to download this paper.
DOI: 10.6084/m9.figshare.97019.v1
title: Famous place stimulus set

description: This database contains of pictures of famous landmarks all around the world. -340 pictures in total -61 places in total -At least 5 pictures per place -All pictures are under different lighting, angle etc. -Dimension = 450 pixels x 450pixels -Resolution = 97.987 pixels/inch Download this database by visiting the following link http://analyze4d.com/adnan/databases/
DOI: 10.6084/m9.figshare.96997.v1
title: Investigating N2pc for it's potential uses in BCI applications

description: This study investigated the use of N2pc (Negativity around 200 ms in posterior contralateral) ERP for its potential use in brain computer interface applications. To the best of our knowledge, the N2pc feature has never been investigated in this context before. All existing N2pc research is mainly focused on the psychological aspects of N2pc as a neural correlate of spatial attention. In this paper, a two phase research is described which culminated in the final BCI application. Exploratory offline tests were conducted in the first phase to identify the challenges involved in using N2pc for BCI. This was followed by the development of an online audio based game in the second phase, controlled by the N2pc in the EEG signals. Both online and offline studies used single trial classification. The results of the study implicates that N2pc has a very promising future with regards to its use in a robust two or three class BCI.
DOI: 10.6084/m9.figshare.96984
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96985.v1
title: Job market lecture

description: A lecture on the job market, gender inequities in job searching and some (hopeuflly) helpful tips on job searching
DOI: 10.6084/m9.figshare.96983
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96984.v1
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96983.v1
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96997.v2
title: Investigating N2pc for it

description: This study investigated the use of N2pc (Negativity around 200 ms in posterior contralateral) ERP for its potential use in brain computer interface applications. To the best of our knowledge, the N2pc feature has never been investigated in this context before. All existing N2pc research is mainly focused on the psychological aspects of N2pc as a neural correlate of spatial attention. In this paper, a two phase research is described which culminated in the final BCI application. Exploratory offline tests were conducted in the first phase to identify the challenges involved in using N2pc for BCI. This was followed by the development of an online audio based game in the second phase, controlled by the N2pc in the EEG signals. Both online and offline studies used single trial classification. The results of the study implicates that N2pc has a very promising future with regards to its use in a robust two or three class BCI.
DOI: 10.6084/m9.figshare.96981
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96982
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96997.v3
title: Investigating N2pc for its use in BCI applications

description: This study investigated the use of N2pc (Negativity around 200 ms in posterior contralateral) ERP for its potential use in brain computer interface applications. To the best of our knowledge, the N2pc feature has never been investigated in this context before. All existing N2pc research is mainly focused on the psychological aspects of N2pc as a neural correlate of spatial attention. In this paper, a two phase research is described which culminated in the final BCI application. Exploratory offline tests were conducted in the first phase to identify the challenges involved in using N2pc for BCI. This was followed by the development of an online audio based game in the second phase, controlled by the N2pc in the EEG signals. Both online and offline studies used single trial classification. The results of the study implicates that N2pc has a very promising future with regards to its use in a robust two or three class BCI.
DOI: 10.6084/m9.figshare.96981.v1
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96982.v1
title: Gaussian Job Archive for C9H13F3O3S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.96997.v4
title: Investigating N2pc ERP for its use in BCI applications

description: This study investigated the use of N2pc (Negativity around 200 ms in posterior contralateral) ERP for its potential use in brain computer interface applications. To the best of our knowledge, the N2pc feature has never been investigated in this context before. All existing N2pc research is mainly focused on the psychological aspects of N2pc as a neural correlate of spatial attention. In this paper, a two phase research is described which culminated in the final BCI application. Exploratory offline tests were conducted in the first phase to identify the challenges involved in using N2pc for BCI. This was followed by the development of an online audio based game in the second phase, controlled by the N2pc in the EEG signals. Both online and offline studies used single trial classification. The results of the study implicates that N2pc has a very promising future with regards to its use in a robust two or three class BCI.
DOI: 10.6084/m9.figshare.96966
title: Data for arXiv submissions by subject and year

description: Data for numbers of new submissions to arXiv (http://arxiv.org/) broken down by subject area and by year. See ASCII data file for more details.
DOI: 10.6084/m9.figshare.96968.v1
title: "Happy Cinco de Mayo"

description: Bar life 101
DOI: 10.6084/m9.figshare.96962
title: Whisker Tracker for Matlab

description: Recent version of the Whisker Tracking software for Matlab. Please cite the following paper in your publications: <em>Knutsen PM, Derdikman D, Ahissar E (2005) Tracking whisker and head movements in unrestrained behaving rodents. J Neurophysiol 93:2294-2301</em> The original paper can be downloaded here: http://jn.physiology.org/content/93/4/2294.long The most recent updates to this application is also available through a Subversion repository: http://code.google.com/p/whiskertracker/
DOI: 10.6084/m9.figshare.96949
title: Supplementary material: When does cyclic dominance lead to stable spiral waves?

description: In these notes, we provide some supplementary material to the manuscript "When does cyclic dominance lead to stable spiral waves?". The notes include a schematic description of the model and movies allowing the visualization of the results. See file "index.html" for comments and captions to the movies.
DOI: 10.6084/m9.figshare.96961
title: Yeast Adaptation Day 33

description: Setup is linked below. This is day 33 of an experiment to adapt yeast to deuterium oxide (heavy water, d2o). Attached is the raw and edited data showing hourly growth of yeast in different water types.
DOI: 10.6084/m9.figshare.96961.v1
title: Yeast Adaptation Day 33

description: Setup is linked below. This is day 33 of an experiment to adapt yeast to deuterium oxide (heavy water, d2o). Attached is the raw and edited data showing hourly growth of yeast in different water types.
DOI: 10.6084/m9.figshare.96962.v1
title: Whisker Tracker for Matlab

description: Recent version of the Whisker Tracking software for Matlab. Please cite the following paper in your publications: <em>Knutsen PM, Derdikman D, Ahissar E (2005) Tracking whisker and head movements in unrestrained behaving rodents. J Neurophysiol 93:2294-2301</em> The original paper can be downloaded here: http://jn.physiology.org/content/93/4/2294.long The most recent updates to this application is also available through a Subversion repository: http://code.google.com/p/whiskertracker/
DOI: 10.6084/m9.figshare.96919
title: Lab Notebook, 2011

description: Permanent archive of Carl Boettiger's open lab notebook entries for the year 2011 (http://www.carlboettiger.info/archives.html). Entries are archived in UTF-8 (X)HTML5 with RDFa semantics. Images are embedded in the files as data URIs and equations are provided in MathML. Meets the goals of the Data Management Plan: http://www.carlboettiger.info/2012/10/09/data-management-plan.html
DOI: 10.6084/m9.figshare.96936
title: Gliding motility assay using 5.5M D2O in solution. Assay 01—ROI 1/15.

description: This is a gliding motility assay using kinesin-1 and rhodamine labeled microtubules. Images were taken with an Andor Luca EMCCD camera on an Olympus IX-71 microscope using a 60x 1.42NA PlanApo objective. This is the first set in a series of images taken investigating speed variations of microtubules due to the inclusion of heavy water in the motility assay. Measured speeds in this fileset will be lower than reported in the publication due to the glass slide being brought up to the temperature of 32°C by the objective heater. This assay contained 5528mM of D2O.
DOI: 10.6084/m9.figshare.96949.v8
title: Supplementary material: When does cyclic dominance lead to stable spiral waves?

description: In these notes, we provide some supplementary material to the manuscript "When does cyclic dominance lead to stable spiral waves?". The notes include a schematic description of the model and movies allowing the visualization of the results. See file "index.html" for comments and captions to the movies.