cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.12703009
title: Box model data and figure script in support of Nature Communications Comment

description: Contained within the zip file are model outputs from the Sonke et al. 2022 box model described in the associated manuscript. File names describe the different model runs. The Science_fig.jnl file is a pyferret script to plot the data. Model data from Azimrayat Andrews et al. 2024 are found by following this link: https://iopscience.iop.org/article/10.1088/1748-9326/ad472c
DOI: 10.5281/zenodo.12703010
title: Box model data and figure script in support of Nature Communications Comment

description: Contained within the zip file are model outputs from the Sonke et al. 2022 box model described in the associated manuscript. File names describe the different model runs. The Science_fig.jnl file is a pyferret script to plot the data. Model data from Azimrayat Andrews et al. 2024 are found by following this link: https://iopscience.iop.org/article/10.1088/1748-9326/ad472c
DOI: 10.15468/dl.m83nsn
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jatropha cordata (Ortega) Müll.Arg."
 ]
}

 The dataset includes 581 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012699-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.75kr88
title: Occurrence Download

description: A dataset containing 51925 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Aporia crataegi (Linnaeus, 1758)",
 "PhylumKey is Arthropoda",
 "Year is greater than or equal to 1992",
 "Year is less than or equal to 2012",
 "Geometry POLYGON((-26 34, 42 34, 42 70, -26 70, -26 34))"
 ]
}

 The dataset includes 51925 records from 420 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012698-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f8j949
title: Occurrence Download

description: A dataset containing 269 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jatropha malacophylla Standl."
 ]
}

 The dataset includes 269 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012701-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gquqkt
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypsiboas balzani (Boulenger, 1898)"
 ]
}

 The dataset includes 54 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012703-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ct62u2
title: Occurrence Download

description: A dataset containing 552 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Jatropha gaumeri Greenm."
 ]
}

 The dataset includes 552 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012705-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68nbhg
title: Occurrence Download

description: A dataset containing 31286 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Geometry POLYGON((-76.73153 8.00958,-76.7234 7.96309,-76.73967 7.9259,-76.77569 7.89452,-76.80242 7.86779,-76.81172 7.79109,-76.8001 7.74925,-76.70713 7.72717,-76.58975 7.72485,-76.49328 7.72485,-76.48166 7.80736,-76.46307 7.86896,-76.42239 7.93055,-76.41426 7.99447,-76.73153 8.00958))",
 "StateProvince is one of (antioquia)",
 "TaxonKey is one of (Aves)"
 ]
 }
 ]
}

 The dataset includes 31286 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012704-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umrx8j
title: Occurrence Download

description: A dataset containing 5661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-101.8679 23.71969,-57.31766 23.71969,-57.31766 49.19196,-101.8679 49.19196,-101.8679 23.71969))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pueraria montana (Lour.) Merr."
 ]
}

 The dataset includes 5661 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012706-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7vr9v6
title: Occurrence Download

description: A dataset containing 2745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sporobolus alterniflorus (Loisel.) P.M.Peterson & Saarela"
 ]
}

 The dataset includes 2745 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012707-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k8zt9x
title: Occurrence Download

description: A dataset containing 1028 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pleradenophora bilocularis (S.Watson) Esser & A.L.Melo"
 ]
}

 The dataset includes 1028 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012709-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12822544
title: Input data for Coalispr

description: Datasets to illustrate the use of Coalispr, a Python tool to clean up (small) RNA sequencing results. Coalispr can visualize over 100 bedgraphs in one panel and helps to retrieve read counts from associated alignment files without reliance on reference features like GTF annotations. The archives contain bedgraphs (also in processed form), reference data, bam-alignment files for counting, and descriptions for experiments, ncRNAs and genes.
description: Datasets of STAR-mapped RNA-seq reads for analysis with Coalispr as described in the essay "Bio informatics: Integrate negative controls to get the good data." Preparation and analysis are detailed in the tutorials "Cryptococcus siRNAs", and "Mouse miRNAs".

Unprocessed fungal datasets were retrieved from GEO GSE128009 and GSE43363 and have been published by Dumesic et al. 2013 (DOI 10.1016/j.cell.2013.01.046) and Burke et al. 2019 (DOI 10.1534/g3.119.400330). Additional resources were gene-annotations from Wallace et.al 2020 (DOI 10.1093/nar/gkaa060) and data at GEO GSE133125.

Mouse data have been described in Sarshad et al. 2018 (DOI 10.1016/j.molcel.2018.07.020) and raw miRNA sequencing reads were kindly provided by the corresponding author, Markus Hafner.
DOI: 10.15468/dl.acthcm
title: Occurrence Download

description: A dataset containing 196196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-72.23075 -39.33085,-70.63308 -39.33085,-70.63308 -37.7922,-72.23075 -37.7922,-72.23075 -39.33085))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 196196 records from 345 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012700-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1o8pzu
title: Occurrence Download

description: A dataset containing 373286 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Rupicapra pyrenaica Bonaparte, 1845",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)",
 "TaxonKey is Dama dama (Linnaeus, 1758)",
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "TaxonKey is Rodentia",
 "TaxonKey is Lepus europaeus Pallas, 1778",
 "TaxonKey is Nyctereutes procyonoides (Gray, 1834)",
 "TaxonKey is Capra ibex Linnaeus, 1758",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-10.67 71.05,-10.67 34.5,31.55 34.5,31.55 71.05,-10.67 71.05))",
 "Year is greater than or equal to 1985"
 ]
}

 The dataset includes 373286 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034618-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-8184
title: Hull Case, 1951

description: 36 images. Hull Case, May 25, 1951. Holly Holland; Margaret Holland (wife); Pearl Fisher; Glenn Annabel (deputy sheriff); Roy Bruce (deputy sheriff); Dan Rios (deputy sheriff); Mary Plonske; Jack Hull (uncle of victim); Henry Ford McCracken (suspect); Sergeant Boyd Sturgis; Mrs. Grace Reynolds; Roy J. Reynolds; Erma Shaw; Carlos Martinez; Anita Martinez; Barney McKown (deputy sheriff); James McCarty (deputy sheriff); Mr. and Mrs. Orlando Shaw; Joe Scherman; Mrs. Terry Hull; Leonard Hull (father of victim); Lee Stradley.
DOI: 10.15468/dl.nvr2pu
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "MediaType is Image",
 "TaxonKey is Alchornea glandulosa Poepp."
 ]
}

 The dataset includes 618 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009511-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6m6wv7
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astragalus macropodium Lipsky"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033711-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-109720
title: Fire at 763 South Los Angeles Street, 1954

description: 4 images. Fire at 763 South Los Angeles Street, 31 December 1954. General views of fire; View of fire with broken clothes dummy in foreground. ; Caption slip reads: "Photographer: Wesselmann. Date: 1954-12-31. Reporter: Siefer. Assignment: Fire at 763 South Los Angeles Street. 7, 9: General views of fire. 16: View of fire shows broken clothes dummy in foreground. 11: Herald-Express Photog., Perry Fowler, examines dummy at fire scene."
DOI: 10.15468/dl.2zcwcg
title: Occurrence Download

description: A dataset containing 373286 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Rupicapra pyrenaica Bonaparte, 1845",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)",
 "TaxonKey is Dama dama (Linnaeus, 1758)",
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "TaxonKey is Rodentia",
 "TaxonKey is Lepus europaeus Pallas, 1778",
 "TaxonKey is Nyctereutes procyonoides (Gray, 1834)",
 "TaxonKey is Capra ibex Linnaeus, 1758",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "TaxonKey is Odocoileus virginianus (Zimmermann, 1780)",
 "TaxonKey is Sus scrofa Linnaeus, 1758"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-10.67 71.05,-10.67 34.5,31.55 34.5,31.55 71.05,-10.67 71.05))",
 "Year is greater than or equal to 1985"
 ]
}

 The dataset includes 373286 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034619-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fvxq95
title: Occurrence Download

description: A dataset containing 733 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tenomerga cinerea (Say, 1831)"
 ]
}

 The dataset includes 733 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017000-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adnpdq
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Centruroides pallidiceps Pocock, 1902"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034623-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-110778
title: Matchbook collector (Orange County section), 1960

description: 2 images. Matchbook collector (Orange County section), 10 August 1960. Walter Menech (with his collection of matchbooks and coins and stamps). ; Caption slip reads: "Photographer: Bill Davis. Date: 1960-08-10. Assignment: Matchbook collector. Special instructions: 4 x 5 royal pan. 2 shots: Walter Menech, of Stanton, uses long book of matches to lite stoogy [sic] -- also looking at collection -- also has stamps and coins. Story coming Thur."
DOI: 10.15468/dl.ea57sq
title: Occurrence Download

description: A dataset containing 21599 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calothorax lucifer (Swainson, 1827)"
 ]
}

 The dataset includes 21599 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033655-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.39zqmg
title: Occurrence Download

description: A dataset containing 12142287 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet automatically identified occurrences"
 ]
}

 The dataset includes 12142287 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007144-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-8003
title: Search for Patricia Hull in Buena Park, 1951

description: 19 images. Search for Patricia Hull in Buena Park, May 21, 1951. Mrs. Terry Hull (mother); Mr. Leonard Hull (father); Bob Luxenbourger (officer); Captain Tom McGaff; Sergeant Russell Campbell; Sergeant Leonard Foiles; Lee Stradley.
DOI: 10.15468/dl.gcr37v
title: Occurrence Download

description: A dataset containing 544684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "TaxonKey is one of (Acer platanoides L., Adelges tsugae Annand, 1924, Agrilus planipennis Fairmaire, 1888, Alliaria petiolata (M.Bieb.) Cavara & Grande, Channa argus (Cantor, 1842), Crocodylus niloticus Laurenti, 1768, Dreissena polymorpha (Pallas, 1771), Faxonius rusticus (Girard, 1852), Frangula alnus Mill., Heracleum mantegazzianum Sommier & Levier, Heracleum sphondylium L., Hydrocharis morsus-ranae L., Impatiens glandulifera Royle, Kali tragus (L.) Scop., Lissachatina fulica (Bowdich, 1822), Lycorma delicatula (White, 1845), Myriophyllum spicatum L., Phragmites australis subsp. australis, Potamogeton crispus L., Pterois volitans (Linnaeus, 1758), Pueraria lobata (Willd.) Ohwi, Python bivittatus Kuhl, 1820, Reynoutria japonica Houtt., Reynoutria sachalinensis (F.Schmidt) Nakai, Reynoutria ×bohemica Chrtek & Chrtková, Rhamnus cathartica L., Rhinella marina (Linnaeus, 1758), Stratiotes aloides L., Trapa natans L., Vincetoxicum nigrum (L.) Moench, Vincetoxicum rossicum (Kleopow) Barbar.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 544684 records from 538 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016994-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive109450.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109451.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109452.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109453.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109454.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109455.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109456.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109457.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109458.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109459.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109460.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109461.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109462.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109463.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109464.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109465.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109466.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109467.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109468.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109469.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109470.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109471.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109472.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109473.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109474.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109475.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109476.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive109477.20230509.8.1
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.