cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19322180.v1
title: Afonso_Africa_2022_Nat_Geosci.zip

description: Here we provide three files containing the main model parameters (of the mean model of the multidimensional posterior PDF) used to make the figures in the main manuscript. Note that here we provide the "raw" data, whereas the figures were plotted with differentdegrees of smoothing according to the resolution tests presented in the Suppl. Material.<br>Files:<br>1 - "Africa_NG_2022_v1.dat": This file contains temperature (oC), density (kg/m3), Vp (m/s) and Vs (m/s) of the model, from the surface down to 380 km depth, at vertical increments of 2 km. Note that only the average crustal density and Vp are reported (distinct values for sediments and crystalline crust), as they currently are the most reliable magnitudes for these parameters. We are working on refining the sensitivity to the vertical stratification in the crust. Note also that the true layers' thicknesses are reported in a separate file (see below). <br>2 - "Africa_NG_layers_v1.dat": This file contains the thicknesses of both sedimentary and crystalline layers in the crust as well as Moho and LAB depths. All magnitudes are in meters. If sediment thickness is zero, it means that no sedimentary cover was considered (i.e. the entire crust is made up of crystalline rocks). <br>3 - "Africa_NG_2022_mantle_v1.dat": This file contains the concentrations of the five main major elements (Si, Al, Ca, Mg, Fe) and the average, bulk Mg# of the lithospheric mantle. <br>Please contact J. C. Afonso (j.c.afonso@utwente.nl) for further details.
DOI: 10.25946/21520980.v1
title: Reducing Congestion For Runners in Running Events Dataset

description: Project aims to investigate congestion within running events. On this record available and open are; race director surveys, runner surveys, post running event surveys, excel document of flow rate, density and raw timing data from running events. Data collected and not publicly available includes focus group meeting audio recordings and transcriptions (3 meetings 1hr in duration each) and video footage of running event start lines (approximately 2 hrs of video footage).
DOI: 10.6084/m9.figshare.1595889_d87
title: Body weight Raw Data

description: The file shows the animal number information on the first row and the exposure group information in the second row. Then, the first column has the study day information, and each body weight recorded (in grams) is recorded in corresponding cells.
DOI: 10.6084/m9.figshare.19232523.v2
title: M-A island segmentation of bainite microstructures in SEM image data

description: The original resolution of in total 40 images is 2048x1536 divided into three datasets (images in set I: 20x, set II: 10x, set III:10x). Each of the three datasets correspond to a specific cooling strategy (i,ii or iii) of a bainitic steel and therefore to a bainitic microstructure with specific characteristics. After cropping the image size of each dataset, sub-datasets are created with image resolution: 768x768, 512x512, 256x256, 192x192, 128x128 and 64x64 (only for dataset II). Each sub-dataset contains a training set ("im_train"), validation set ("im_val") and labels for train and validation set. The appendix provides (i) a dataset consisting of all 40 images in reference size, (ii) the reference images of dataset I which was merged from images of two cooling strategies.
DOI: 10.6084/m9.figshare.21229829.v1
title: SPSS file for Visual Impairment, Hawassa, Ethiopia.sav

description: # Title of Dataset: - [ ] Spss file for visual impairment among DM, Hawassa, Ethiopia ## Description of the Data and file structure - [ ] a spss data for visual impairment among adult diabites mellitus, Hawassa, ethiopa were collected through direct interview and chart review with accourdance of ethical rules and regulation. ## Sharing/access Information - [ ] All future access of the data set will be with the consent of the autor.and, all data were orginally collected from the study partcipants.
DOI: 10.6084/m9.figshare.27925488.v1
title: scopus 426.csv

description: This dataset for paper with title "Global Perspective on Red Chili Drying: Insights from Two Decades of Research (2004 - 2023)" published in Frontiers in Sustainable Food System
DOI: 10.6084/m9.figshare.19980406.v1
title: Additional file 6 of Systematic analysis and expression profiles of TCP gene family in Tartary buckwheat (Fagopyrum tataricum (L.) Gaertn.) revealed the potential function of FtTCP15 and FtTCP18 in response to abiotic stress

description: Additional file 6: Supplementaryfile 6: Table S5. The interaction networkdata of FtTCPs from STRING in this study.
DOI: 10.17632/cgpg2nd7fz
title: Supplementary data for the article “Enhanced volcanic and hydrothermal activities at 6°N on the Carlsberg Ridge: Response to sea-level change”

description: Additional Data Table S1: Oxygen isotope and radiocarbon data
Additional Data Table S2: Major and trace geochemical results 
Additional Data Table S3: Correlation matrices for metal flux time series
Additional Data Table S4: Magnetic susceptibility data
DOI: 10.6084/m9.figshare.4479563.v1
title: EACL 2017 - Multi-target UK election Twitter sentiment corpus

description: This corpus was collected between 7th February and 30th March 2015, about the UK election. It contains 4,077 tweets with overall 12,587 target entities, which 1,865 are positive, 4,707 are neutral and 6,015 are negative.<br>The annotation guidelines can be found in: http://www.dcs.warwick.ac.uk/~arkaitz/ukelection/guidelines.php<br>- "tweets" contains original tweets and corresponding target entities and topics;- "annotations" contains annotation results and details about the process such as "timespent"; - "tweets" and "annotations" can be related and combined by tweet IDs;- "train_id" and "test_id" are the training and testing data split that is used for the experiments conducted in the paper below.<br>More information about this corpus can be found in our EACL paper, named "<b>TDParse: Multi-target-specific sentiment recognition on Twitter</b>".<br>License: The annotations are provided under a CC-BY license, while Twitter retains the ownership and rights of the content of the tweets.
DOI: 10.6084/m9.figshare.5125696.v1
title: Supplementary Material for: Physical Performance and Frailty in Chronic Kidney Disease

description: <b><i>Background:</i></b> Poor physical performance and frailty are associated with elevated risks of death and disability. Chronic kidney disease (CKD) is also strongly associated with these outcomes. The risks of poor physical performance and frailty among CKD patients, however, are not well established. <b><i>Methods:</i></b> We measured the Short Physical Performance Battery (SPPB; a summary test of gait speed, chair raises and balance; range 0-12) and the five elements of frailty among 1,111 Chronic Renal Insufficiency Cohort participants. Adjusting for demographics and multiple comorbidities, we fit a linear regression model for the outcome of SPPB score and an ordinal logistic regression model for frailty status. <b><i>Results:</i></b> Median (interquartile range, IQR) age was 65 (57-71) years, median estimated glomerular filtration rate (eGFR) for non-dialysis patients was 49 (36-62) ml/min/1.73 m<sup>2</sup>, and median SPPB score was 9 (7-10). Seven percent of participants were frail and 43% were pre-frail. Compared with the SPPB score for eGFR &gt;60 ml/min/1.73 m<sup>2</sup>, the SPPB was 0.51 points lower for eGFR 30-59; 0.61 points lower for eGFR 15-29, and 1.75 points lower for eGFR &lt;15 (p &lt; 0.01 for all comparisons). eGFR 30-59 (odds ratio, OR 1.45; p = 0.024), eGFR 15-29 (OR 2.02; p = 0.002) and eGFR &lt;15 (OR 4.83; p &lt; 0.001) were associated with worse frailty status compared with eGFR &gt;60 ml/min/1.73 m<sup>2</sup>. <b><i>Conclusions:</i></b> CKD severity was associated with poor physical performance and frailty in a graded fashion. Future trials should determine if outcomes for CKD patients with frailty and poor physical performance are improved by targeted interventions.
DOI: 10.6084/m9.figshare.7672229.v1
title: Additional file 11: of A comparative evaluation of hybrid error correction methods for error-prone long reads

description: Table S9. Memory usage performance statistics by the preprocessing modules of five error correction methods (unit: G). (XLSX 14 kb)
DOI: 10.6084/m9.figshare.16669900.v1
title: S3.4_Table

description: Chapter 3, Supplementary Table 4
DOI: 10.6084/m9.figshare.23590161.v1
title: Melilotus officinalis genome annotation

description: This study reports a high-quality de novo assembly for Melilotus officinalis obtained at the chromosomal level using PacBio third-generation Hi-Fi sequencing. The generated high-quality genome assembly of Melilotus officinalis provides a key basis for accelerating the research and molecular breeding of this important forage crop. The genome is also valuable for future studies on legume forage biology, evolution, and genome-wide mapping of quantitative trait loci associated with the relevant agronomic traits.
DOI: 10.6084/m9.figshare.5573032.v4
title: The timescale of early land plant evolution. 2018. Jennifer L. Morris*, Mark N. Puttick*, James Clark, Dianne Edwards, Paul Kenrick, Silvia Pressel, Charles H. Wellman, Ziheng Yang, Harald Schneider, Philip C. J. Donoghue. PNAS.

description: Alignments and input phylogenies for divergence time estimations
DOI: 10.6084/m9.figshare.11918298.v1
title: PTPMT1 expression.pzf

description: PTPMT1 expression realtime PCR
DOI: 10.6084/m9.figshare.17302958.v1
title: Supplementary Table 1.xlsx

description: Supplemental proteomics data table.
DOI: 10.6084/m9.figshare.22647394.v1
title: PAEST - Parque Estadual da Serra do Tabuleiro. Modelo STL para impressão 3D em prototipagem da paisagem

description: Modelo STL para impressão 3D em prototipagem da paisagem do PAEST - Parque Estadual da Serra do Tabuleiro. Estado de Santa Catarina Autor: João Henrique Quoos
DOI: 10.6084/m9.figshare.28080578.v1
title: Arsenic Skin Image Data

description: We have used this arsenic skin image data for our study. We took the data from Mendeley data. link : https://data.mendeley.com/datasets/x4hgnjj5gv/2.
DOI: 10.6084/m9.figshare.21342153.v1
title: Candidate genes for litter size in Xinjiang sheep identified by Specific Locus Amplified Fragment (SLAF) sequencing

description: The aim of this study was to investigate the selection signatures at a genome-wide level in ‘Pishan’ sheep using Specific Locus Amplified Fragment (SLAF)-seq. Blood samples from 126 ewes were sequenced using SLAF tags, and the ovarian tissues from 8 ewes (Bashbay sheep, a single litter size group (SG group); ‘Pishan’ sheep, double litter size group (DG group)) were collected to detect expression levels by quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR). Selection signature analysis was performed using global fixation index (Fst) and nucleotide diversity (π) ratio. A total of 1,192,168 high-quality SLAFs were identified. Notably, 2380 candidate regions under selection using two approaches were identified. A total of 2069 genes were identified, which were involved in dopaminergic synapses, thyroid hormone synthesis, ovarian steroidogenesis and thyroid hormone signalling pathways. Furthermore, Growth Differentiation Factor 9 (<i>GDF9</i>), Period Circadian Regulator 2 (<i>PER2</i>), Thyroid Stimulating Hormone Receptor (<i>TSHR</i>), and Nuclear Receptor Coactivator 1 (<i>NCOA1</i>) reside within these regions and pathways. The expression levels of <i>GDF9</i> and <i>PER2</i> genes in sheep tissue of the DG group were significantly higher than those in the SG group. These genes are interesting candidates for litter size and provide a starting point for further identification of conservation strategies for ‘Pishan’ sheep.
DOI: 10.17605/osf.io/4b8qg
title: From Young to Old: Mimicking Neuronal Aging in Directly Converted Neurons from Young Donors - DATA

description: A substantial challenge in human brain aging is to find a suitable model to mimic neuronal aging in vitro as accurately as possible. Using directly converted neurons (iNs) from human fibroblasts is considered a promising tool in human aging since it retains the aging-associated mitochondrial donor signature. Still, using iNs from aged donors can pose certain restrictions due to their lower reprogramming and conversion efficacy than those from younger individuals. To overcome these limitations, our study aimed to establish an in vitro neuronal aging model mirroring features of in vivo aging by acute exposure on young iNs to either human stress hormone cortisol or the mitochondrial stressor rotenone, considering stress as a trigger of in vivo aging. The impact of rotenone was evident in mitochondrial bioenergetic properties by showing aging-associated deficits in mitochondrial respiration, cellular ATP, and MMP and a rise in glycolysis, mitochondrial superoxide, and mitochondrial ROS; meanwhile, cortisol only partially induced an aging-associated mitochondrial dysfunction. To replicate the in vivo aging-associated mitochondrial dysfunctions, using rotenone, a mitochondrial complex I inhibitor, proved to be superior to the cortisol model. This work is the first to use stress on young iNs to recreate aging-related mitochondrial impairments. 

Varghese, Nimmy, Amandine Grimm, M. Zameel Cader, and Anne Eckert. 2024. "From Young to Old: Mimicking Neuronal Aging in Directly Converted Neurons from Young Donors" Cells 13, no. 15: 1260. https://doi.org/10.3390/cells13151260
DOI: 10.6084/m9.figshare.12186615.v1
title: 3d3d04eca056556b0b26.svs - Whole slide image of canine mammary carcinoma

description: Anonymized whole slide image of canine mammary carcinoma, stained with H&E. File is in Aperio SVS format.
DOI: 10.6084/m9.figshare.1255030.v3
title: Using RNA sequencing for identifying gene imprinting and random monoallelic expression in human placenta

description: Given the possible critical importance of placental gene imprinting and random monoallelic expression on fetal and infant health, most of those genes must be identified, in order to understand the risks that the baby might meet during pregnancy and after birth. Therefore, the aim of the current study was to introduce a workflow and tools for analyzing imprinted and random monoallelic gene expression in human placenta, by applying whole-transcriptome (WT) RNA sequencing of placental tissue and genotyping of coding DNA variants in family trios. Ten family trios, each with a healthy spontaneous single-term pregnancy, were recruited. Total RNA was extracted for WT analysis, providing the full sequence information for the placental transcriptome. Parental and child blood DNA genotypes were analyzed by exome SNP genotyping microarrays, mapping the inheritance and estimating the abundance of parental expressed alleles. Imprinted genes showed consistent expression from either parental allele, as demonstrated by the SNP content of sequenced transcripts, while monoallelically expressed genes had random activity of parental alleles. We revealed 4 novel possible imprinted genes (<i>LGALS8</i>, <i>LGALS14</i>, <i>PAPPA2</i> and <i>SPTLC3</i>) and confirmed the imprinting of 4 genes (<i>AIM1</i>, <i>PEG10</i>, <i>RHOBTB3</i> and <i>ZFAT-AS1</i>) in human placenta. The major finding was the identification of 4 genes (<i>ABP1</i>, <i>BCLAF1</i>, <i>IFI30</i> and <i>ZFAT</i>) with random allelic bias, expressing one of the parental alleles preferentially. The main functions of the imprinted and monoallelically expressed genes included: i) mediating cellular apoptosis and tissue development; ii) regulating inflammation and immune system; iii) facilitating metabolic processes; and iv) regulating cell cycle.
DOI: 10.6084/m9.figshare.22059317.v1
title: Indo-Pacific Research Policy Dataset

description: The original dataset used for Indo-Pacific security policy research.
DOI: 10.6084/m9.figshare.23306234.v2
title: Data of underground pipelines detected using transient electromagnetic method

description: This data set was collected using a small circuit transient electromagnetic device and integrated with xls in the data format.
DOI: 10.17632/t98c6t6ccr
title: Geographic data Visualisation and Map Generation

description: This project is one of the academic projects given to us in the Geographic Information System (GIS) Course. Created by: Pranav Pandya (Me) and Kartikey Hadiya We sampled information for pollution emission in Delhi, India. Pollution data was obtained from https://data.gov.in/resources/real-time-air-quality-index-various-locations Pollution index data can be obtained from https://cpcb.nic.in/RealTimeAirQualityData.php Pollution data only had address of Indian Meteorological Department, so each station was located in Google Earth and pin points were added at each station. Then in the sidebar containing those pins on right-click, a new folder was added and all the pins were added in that new folder in google earth. Then that folder was saved as kml file. This kml file was uploaded to Mygeodata: https://mygeodata.cloud/converter/kml-to-csv and was converted into csv. Then the csv file was opened and coordinates were copied in the pollution data file. That file was later saved as CSV and imported in ArcGIS and xy data was displayed. Shapefile was obtained from web search, which is attached as well. That shapefile was imported in ArcGIS and the final view was generated which is shown in the picture.
DOI: 10.6084/m9.figshare.25125308.v2
title: Trace element partitioning between saline aqueous fluids and subducted metasediments, and the origin of the “sediment fingerprint” in arc magmas

description: This item is a dataset attached to the article "Trace element partitioning between saline aqueous fluids and subducted metasediments, and the origin of the 'sediment fingerprint' in arc magmas" by Marija Putak Juricek, Andreas Audetat and Hans Keppler.
DOI: 10.6084/m9.figshare.26089332.v1
title: HiGTS_2019s3

description: HiGTS is a high temporal resolution global gridded dataset of human thermal stress metrics. Derived using climate variables from ERA5-Land and ERA5, the HiGTS consists of hourly gridded maps of Universal Thermal Climate Index (UTCI), Universal Thermal Stress (UTS), and daily Thermal Stress Duration (TSD) at 0.1° × 0.1° spatial resolution over the global land surface.HiGTS_2019s3 contains the data from July 1, 2019 to September 30, 2019.
DOI: 10.6084/m9.figshare.12015084.v1
title: Zhao et al-2020-GBC-data.docx

description: This dataset is used for creating the figures in manuscript "Controls on burial of organic carbon in the Eastern China Marginal Seas: A regional synthesis" <br>
DOI: 10.6084/m9.figshare.14318080.v1
title: Physical and sensory characteristics of salty cereal bar with different binding agents

description: Abstract The purpose of this study was to evaluate different binding agents for the preparation of salty cereal bars and to characterize them regarding their physical and sensory parameters. Four formulations of cereal bars were developed using collagen, guar gum, xanthan gum and psyllium as binders, which were evaluated for instrumental color and texture. The results of the instrumental analysis revealed that the cereal bars presented characteristic color and crispness for this type of product and the microbiological analyzes ensured food safety. Sensorially, the cereal bars showed good acceptability, especially the bars made with psyllium and xanthan gum binders in the parameters of appearance, texture, flavor and color. The different binders showed technological efficiency in the elaboration of salty cereal bars, but xanthan gum and psyllium were the ones that best corresponded to the expected attributes.
DOI: 10.6084/m9.figshare.21508242.v1
title: Exp Physiol - Andrade et al. 2023 - Raw data (1).xlsx

description: Dataset used in the following manuscript: Determinants of the core body temperature attained at the end of a 10-km time trial under environmental heat stress. The manuscript is authored by Andrade MT, Nunes-Leite MMS, Bruzzi RS, Souza CH, Uendeles-Pinto JP, Prado LS, Soares DD, Gonçalves DAP, Coimbra CC, and Wanner SP.
DOI: 10.6084/m9.figshare.19785193.v1
title: WhatsApp Data Set

description: Anonymized private WhatsApp chat histories, presented in A.Seufert, F. Poignée, M. Seufert, and T. Hoßfeld. "Share and Multiply: Modeling Communication and Generated Traffic in Private WhatsApp Groups," in<em> IEEE Access</em> 2023. <br> Details on the dataset format are given in <strong>README.md</strong>.
DOI: 10.6084/m9.figshare.24042585.v2
title: 基于绿色金融改革创新试验区设立的准自然实验数据data.dta

description: 本文的研究样本包括2014-2020年的中国A股上市公司。根据环保部2008年发布的《上市公司环境保护核查行业分类管理目录》，结合2012年中国证监会行业分类标准，工业企业内煤炭、矿山、纺织等16个行业被列为重污染企业。浙江、江西、广东、贵州、新疆试点地区重污染企业为试点组，其他省份为对照组。此外，该研究还排除了来自ST，PT公司，金融业和缺失数据的样本。最终，我们获得了308家企业的数据，共2，156个观察结果。试验组由78家重污染企业组成，546个观测结果。我们修剪了观测值的顶部和底部 1% 以删除异常值。主要数据源是CSMAR（国泰安）数据库、企业社会责任报告、年度报告等。
DOI: 10.6084/m9.figshare.24504115.v1
title: PMC-Patients Dataset

description: <pre>## PMC-Patients Dataset<br><br>The core file of our dataset, containing the patient summaries, demographics, and relational annotations.<br><br>### PMC-Patients.json<br>Patient summaries are presented as a `json` file, which is a list of dictionaries with the following keys:<br>- `patient_id`: string. A continuous id of patients, starting from 0.<br>- `patient_uid`: string. Unique ID for each patient, with format PMID-x, where PMID is the PubMed Identifier of source article of the note and x denotes index of the note in source article.<br>- `PMID`: string. PMID for source article.<br>- `file_path`: string. File path of xml file of source article.<br>- `title`: string. Source article title.<br>- `patient`: string. Patient note.<br>- `age`: list of tuples. Each entry is in format `(value, unit)` where value is a float number and unit is in 'year', 'month', 'week', 'day' and 'hour' indicating age unit. For example, `[[1.0, 'year'], [2.0, 'month']]` indicating the patient is a one-year- and two-month-old infant.<br>- `gender`: 'M' or 'F'. Male or Female.<br>- `relevant_articles`: dict. The key is PMID of the relevant articles and the corresponding value is its relevance score (2 or 1 as defined in the ``Methods'' section).<br>- `similar_patients`: dict. The key is patient_uid of the similar patients and the corresponding value is its similarity score (2 or 1 as defined in the ``Methods'' section).</pre>
DOI: 10.6084/m9.figshare.4893215.v1
title: GDP data-Lixiong Yang.xlsx

description: The quarterly GDP data for the period 2001Q1–2013Q4, including both the headline GDP estimates and the three components. To assess the quality of China’s preliminary data of the quarterly GDP, we examine the unbiasedness and efficiency of the preliminary data of the headline GDP and the three components. We modify the tests for unbiasedness and efficiency by incorporating the Fourier approximation to capture the effect of the state of the economy.
DOI: 10.6084/m9.figshare.6820172.v1
title: Albrich_et_al_2018_EcoApps

description: This data set contains data for the paper "Trade-offs between temporal stability and level of forest ecosystem services provisioning under climate change" by Katharina Albrich, Werner Rammer, Dominik Thom and Rupert Seidl, accepted for publication in Ecological Applications.<br><br>It contains the data needed for the analysis within the main paper in csv files as well as an R script detailing the analysis steps.<br>
DOI: 10.6084/m9.figshare.12493682.v1
title: In vitro efficacy of a copper iodine complex PPE disinfectant for SARS-CoV-2 inactivation - Raw Data in CSV

description: This is the raw data set for the paper titled "In vitro efficacy of a copper iodine complex PPE disinfectant for SARS-CoV-2 inactivation" by Emily Mantlo, <i>et al </i>(2020).