cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17044/scilifelab.28380476.v1
title: Coordinates of microbial contamination in eukaryotic reference genomes

description: This dataset contains coordinates of microbial contamination in eukaryotic chromosome-level reference genomes of 96 plant, 114 invertebrate and 162 non-mammalian vertebrate species, 566 chromosome- and scaffold-level mammalian reference assemblies from the National Center for Biotechnology Information Reference Sequence Database (NCBI RefSeq), https://ftp.ncbi.nlm.nih.gov/refseq/release/, and a custom arthropod dataset comprising 2088 reference genomes, and 1323 nordic plant contig-level assemblies from the PhyloNorway project, DataverseNO V1, https://dataverse.no/dataset.xhtml;jsessionid=dfe334bbadc5fb9c5eab4332d568?persistentId=doi:10.18710/3CVQAG&version=DRAFT.Each group of organisms has two coordinate (bed-) files: simple and comprehensive, the "full"-version corresponds to the comprehensive bed-file with microbial annotation for each region of microbial contamination.The dataset was produced by Nikolay Oskolkov, Lund University, Sweden, within the NBIS SciLifeLab long-term support project, PI Tom van der Valk, Centre for Palaeogenetics, Stockholm, Sweden.If you use the dataset for your research, please cite our manuscript:<i>Nikolay Oskolkov, Chenyu Jin, Samantha López Clinton, Flore Wijnands, Ernst Johnson, Benjamin Guinet, Verena Kutschera, Cormac Kinsella, Peter D. Heintzman and Tom van der Valk, Disinfecting eukaryotic reference genomes to improve taxonomic inference from environmental ancient metagenomic data, manuscript in preparation</i>Questions regarding the dataset should be sent to nikolay.oskolkov@scilifelab.se
DOI: 10.15468/dl.8hnkjt
title: Occurrence Download

description: A dataset containing 59848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus acris L.",
 "Country is Switzerland"
 ]
}

 The dataset includes 59848 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004268-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cfjfn
title: Occurrence Download

description: A dataset containing 11999921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acer L., Aesculus L., Alnus Mill., Amelanchier Medik., Berberis L., Betula L., Carpinus L., Cornus L., Corylus L., Cotoneaster Medik., Ulmus L., Viburnum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11999921 records from 6425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004270-250325103851331/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.te4rad
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Human Observation"
 ]
 },
 "TaxonKey is Pinus jaliscana Pérez de la Rosa"
 ]
}

 The dataset includes 82 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258192-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4rzfsn
title: Occurrence Download

description: A dataset containing 24937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monotropa hypopitys L."
 ]
}

 The dataset includes 24937 records from 353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0214258-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ovvuy
title: Occurrence Download

description: A dataset containing 31104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bidens frondosa L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31104 records from 186 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014742-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n7qeps
title: Occurrence Download

description: A dataset containing 11722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "TaxonKey is Tiaris olivaceus (Linnaeus, 1766)",
 "TaxonKey is Tiaris olivaceus intermedius (Ridgway, 1885)",
 "TaxonKey is Tiaris olivaceus olivaceus",
 "TaxonKey is Tiaris olivaceus pusillus Swainson, 1827",
 "TaxonKey is Tiaris olivaceus ravidus Wetmore, 1957",
 "TaxonKey is Tiaris olivaceus bryanti (Ridgway, 1898)"
 ]
 }
 ]
}

 The dataset includes 11722 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0276785-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbp8br
title: Occurrence Download

description: A dataset containing 711 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Human Observation"
 ]
 },
 {
 "or" : [
 "Continent is North America",
 "Continent is South America"
 ]
 },
 "TaxonKey is Caupolicana Spinola, 1851",
 "Year 1960-2021"
 ]
}

 The dataset includes 711 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0262052-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fp9aex
title: Occurrence Download

description: A dataset containing 20392848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 20392848 records from 576 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011392-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.38khvk
title: Occurrence Download

description: A dataset containing 840 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "TaxonKey is Maranta gibba Sm.",
 "TaxonKey is Marenzelleria neglecta Sikorski & Bick, 2004",
 "TaxonKey is Marenzelleria viridis (Verrill, 1873)",
 "TaxonKey is Marenzelleria wireni Augener, 1913",
 "TaxonKey is Margaroperdix madagarensis (Scopoli, 1786)",
 "TaxonKey is Marginella glabella (Linnaeus, 1758)"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 840 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014742-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j8m7na
title: Occurrence Download

description: A dataset containing 8807 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample"
 ]
 },
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fratercula arctica (Linnaeus, 1758)",
 "Year 1991-2021"
 ]
}

 The dataset includes 8807 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194088-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajqwzc
title: Occurrence Download

description: A dataset containing 19524740 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Brazil"
 ]
}

 The dataset includes 19524740 records from 3426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258188-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6j357
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Papuacocelus papuanus n. gen., n. sp. a new Eurycanthinae from Papua New Guinea, with notes on the genus Dryococelus Gurney, 1947 and description of the egg (Phasmatodea: Phasmatidae: Eurycanthinae)"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046688-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95dm3k
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Bombus trifasciatus Smith, 1852",
 "Year 1970-2024"
 ]
}

 The dataset includes 70 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046689-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/10278488
title: Full TMDB Movies Dataset 2024 (1M Movies)
DOI: 10.17632/vgff96hwbv.1
title: Dairy calcium promotes the probiotic effects

description: This dataset includes all raw data on concentration of metabolites in fermentation samples from an in vitro study.
DOI: 10.17632/4ts8z2fcn6.1
title: Pro and anti-system attitudes in Spanish-speaking countries

description: This research aims to determine the attitude of people from various Spanish-speaking countries towards the political system, and whether said attitude reflects the specified anti-system attitude.
Furthermore, it is intended to verify whether this attitude is presented concomitantly with the traits of the so-called Dark Personality (Machiavellianism, subclinical narcissism, subclinical psychopathy and everyday sadism), with social values (materialistic, postmaterialistic, religiosity, and hedonistic), with altruism, and with social desirability (Clemente and Espinosa, 2020; Espinosa and Clemente, 2020).

The work hypotheses are:
- H1: People will tend to divide into two categories, those who understand that democracy should be based on the representation of the three powers, and those who understand that democracy is only governmental power.
- H2: It is possible to create a scale that determines which people have pro-system and anti-system attitudes.
- H3: There will be a relationship between the dark personality variables and the attitude towards the political system, such that those who defend the anti-system perspective will present higher levels of the four Dark Personality traits than those who defend the existence of tripartite power (pro -system).
- H4: The predominant values among anti-system people will be post-materialist, while for pro-system people they will be materialist.
- H5: Social desirability will be higher in pro-system subjects, while scores on the altruism variable will be higher in anti-system subjects.
DOI: 10.17632/4ts8z2fcn6.2
title: Pro and anti-system attitudes in Spanish-speaking countries

description: This research aims to determine the attitude of people from various Spanish-speaking countries towards the political system, and whether said attitude reflects the specified anti-system attitude.
Furthermore, it is intended to verify whether this attitude is presented concomitantly with the traits of the so-called Dark Personality (Machiavellianism, subclinical narcissism, subclinical psychopathy and everyday sadism), with social values (materialistic, postmaterialistic, religiosity, and hedonistic), with altruism, and with social desirability (Clemente and Espinosa, 2020; Espinosa and Clemente, 2020).

The work hypotheses are:
- H1: People will tend to divide into two categories, those who understand that democracy should be based on the representation of the three powers, and those who understand that democracy is only governmental power.
- H2: It is possible to create a scale that determines which people have pro-system and anti-system attitudes.
- H3: There will be a relationship between the dark personality variables and the attitude towards the political system, such that those who defend the anti-system perspective will present higher levels of the four Dark Personality traits than those who defend the existence of tripartite power (pro -system).
- H4: The predominant values among anti-system people will be post-materialist, while for pro-system people they will be materialist.
- H5: Social desirability will be higher in pro-system subjects, while scores on the altruism variable will be higher in anti-system subjects.
DOI: 10.17632/wnz7wh3f3k.1
title: Supplementary material_Trophic niche shifts in Japanese anchovy, Engraulis japonica, during ontogenetic migration in a temperate continental shelf system

description: Supplementary material_Trophic niche shifts in Japanese anchovy, Engraulis japonica, during ontogenetic migration in a temperate continental shelf system
DOI: 10.17632/w9ybdfhhgr.1
title: Supplementary data for the article "The formation of the trinitites unveiled by their oxygen and silicon isotopic compositions."

description: The data file shows the triple oxygen and silicon isotope compositions of the three trinitite samples with their associated chemical compositions. The isotopic analyses were realized with the Cameca ion microprobe IMS 1270-E7. The chemical compositions were analyzed with the Cameca SX-five electron microprobe.
DOI: 10.17632/w9ybdfhhgr.2
title: Supplementary data for the article "The formation of the trinitites unveiled by their oxygen and silicon isotopic compositions."

description: The data file shows the triple oxygen and silicon isotope compositions of the three trinitite samples with their associated chemical compositions. The isotopic analyses were realized with the Cameca ion microprobe IMS 1270-E7. The chemical compositions were analyzed with the Cameca SX-five electron microprobe.
DOI: 10.17632/w9ybdfhhgr.3
title: Supplementary data for the article "The formation of the trinitites unveiled by their oxygen and silicon isotopic compositions."

description: The data file named "Supplementary data GCA Trinity" shows the triple oxygen and silicon isotope compositions of the three trinitite samples with their associated chemical compositions. The isotopic analyses were realized with the Cameca ion microprobe IMS 1270-E7, at CRPG-CNRS, Nancy. The chemical compositions were analyzed with the Cameca SX-five electron microprobe, at the Camparis platform, Paris.
The 5 supplementary figures are in the file "Supplementary Material Figure GCA". In this file, the three figures that show the repartition of our isotopic composition in the three samples, are in low resolution. So, individual PNG files showing the high-resolution versions of these three figures were added to this depository.
DOI: 10.15468/dl.8s6cy5
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paralithodes camtschaticus (Tilesius, 1815)",
 "Country is Norway",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 62 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046691-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14506283
title: MCGPU simulated cone beam computed tomography data using the XCAT phantom

description: This package contains simulated projection data for CBCT. The simulations were performed with the MCGPU software and two different simulated cases are included. One has 5e9 photons (XCAT) and one has 1e9 (XCATHalf). The simulated phantom is the XCAT (female) human phantom (https://doi.org/10.1118/1.3480985). The projections include also the scatter data and are the original projections obtained from MCGPU with no modifications. For details on the data structure, please see the MCGPU documentation: https://github.com/DIDSR/MCGPU

The simulated scanner is very closely based on Planmed XFI, but is not exactly the same. Note that MCGPU only allows the definition of the geometries and thus the simulated scanner corresponds to XFI only in the case of the geometry.

Included are also the simulation configuration file that allows to reproduce XCATHalf case (and with very small modifications, XCAT case as well). For that, however, you'll also need the PENELOPE material files (you'll need to find or create these yourself) and get a PENELOPE formatted version of the XCAT phantom. Note that currently MCGPU does not inherently support the phantom that was used for this simulation due to the large size of the phantom. Due to this, the phantom itself is not included here. It is possible to modify MCGPU to support larger phantoms, but this requires manual tuning of the source code. In the future, the XCAT phantom might be included in a new version.

Included is also a mat-file containing a flat measurement.

Note that due to MCGPU, the units in the projection images (and the flat data) is in eV/cm^2.

The open-source software OMEGA contains an example file (MATLAB and Octave only at the moment) to load and reconstruct this MCGPU data: https://github.com/villekf/OMEGA/blob/master/main-files/MCGPU_CT_main_generic.m
DOI: 10.5281/zenodo.14506284
title: MCGPU simulated cone beam computed tomography data using the XCAT phantom

description: This package contains simulated projection data for CBCT. The simulations were performed with the MCGPU software and two different simulated cases are included. One has 5e9 photons (XCAT) and one has 1e9 (XCATHalf). The simulated phantom is the XCAT (female) human phantom (https://doi.org/10.1118/1.3480985). The projections include also the scatter data and are the original projections obtained from MCGPU with no modifications. For details on the data structure, please see the MCGPU documentation: https://github.com/DIDSR/MCGPU

The simulated scanner is very closely based on Planmed XFI, but is not exactly the same. Note that MCGPU only allows the definition of the geometries and thus the simulated scanner corresponds to XFI only in the case of the geometry.

Included are also the simulation configuration file that allows to reproduce XCATHalf case (and with very small modifications, XCAT case as well). For that, however, you'll also need the PENELOPE material files (you'll need to find or create these yourself) and get a PENELOPE formatted version of the XCAT phantom. Note that currently MCGPU does not inherently support the phantom that was used for this simulation due to the large size of the phantom. Due to this, the phantom itself is not included here. It is possible to modify MCGPU to support larger phantoms, but this requires manual tuning of the source code. In the future, the XCAT phantom might be included in a new version.

Included is also a mat-file containing a flat measurement.

Note that due to MCGPU, the units in the projection images (and the flat data) is in eV/cm^2.

The open-source software OMEGA contains an example file (MATLAB and Octave only at the moment) to load and reconstruct this MCGPU data: https://github.com/villekf/OMEGA/blob/master/main-files/MCGPU_CT_main_generic.m
DOI: 10.15468/dl.q7vm27
title: Occurrence Download

description: A dataset containing 154483 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Beta vulgaris L."
 ]
}

 The dataset includes 154483 records from 725 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046686-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t6a9wc
title: Occurrence Download

description: A dataset containing 87526 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Pseudorasbora parva (Temminck & Schlegel, 1846)"
 ]
}

 The dataset includes 87526 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046690-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14547134
title: Decarbonization of global iron and steel plants

description: The dataset is one of the outcomes of research on decarbonization of global iron and steel plants.
DOI: 10.15468/dl.eeudkd
title: Occurrence Download

description: A dataset containing 327 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is UPNG Natural History Collection Plant Family Acanthaceae to Anacardiaceae"
 ]
}

 The dataset includes 327 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046694-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w52qca
title: Occurrence Download

description: A dataset containing 35199 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Brachypodium distachyon (L.) P.Beauv."
 ]
}

 The dataset includes 35199 records from 574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046695-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29wytz
title: Occurrence Download

description: A dataset containing 81753 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trachemys scripta elegans (Wied, 1838)"
 ]
}

 The dataset includes 81753 records from 460 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046696-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ggc2dh
title: Occurrence Download

description: A dataset containing 1645 species occurrences available in GBIF matching the query:
{
 "and" : [
 "VerbatimScientificName is Hemicircus concretus",
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Year 2011-2021",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 1645 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073196-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.