cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7889419
title: Sequence and HMM libraries

description: This repository contains the data specified in the paper entitled "A refined picture of the native Amine Dehydrogenase family revealed by extensive biodiversity screening". It includes:


1. NAD-dependent_enzymes.fa.gz - The library of 20,315,745 sequences of NADPH-dependent enzymes recovered from genomic and metagenomic sequence databases.


2. ref-AmDHs17959_nr.fa.gz - The library of 17,959 ref-AmDH sequences recovered from genomic and metagenomic sequence databases. Considered as the updated nat-AmDH family.


3. NAD_subfams_HMMs.tar.gz - The library of 104,686 Hidden Markov Models (HMMs) of NADPH-dependent protein subfamilies. As described in the paper, those HMMs were obtained by clustering the set uploaded here as NAD-dependent_enzymes.fa.gz and building one HMM per subfamily.


4. ref-AmDHs_HMMs.tar.gz - This repertory includes the HMMs used to update the nat-AmDH family (all_ASMC_no_nad,hmm and all_ASMC_nad_dom.hmm) as well as the ones used to search for distant homologs; HMMs designed for the phylogenetic and structure-based groups built from the set uploaded here as ref-AmDHs17959_nr.fa.gz (asmc_*.hmm and phylo_*.hmm) .


5. ref-AmDH_ASMC_models.tar.gz - The library of 9886 ref-AmDH models built using the ASMC pipeline.


6. 72_ref-AmDH_seqs_representatives.txt.gz - Sequences of the 72 representative ref-AmDHs experimentally tested and found to be active.


7. 17_nat-AmDH_seqs_specific_feature.txt.gz - Sequences of the 17 nat-AmDHs with specific feature that have been heterologously expressed and tested.
DOI: 10.15468/dl.p226dp
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia odontochlamys Hedge"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103203-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h75p6h
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia perrieri A.Chev."
 ]
}

 The dataset includes 35 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103204-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfx6sk
title: Occurrence Download

description: A dataset containing 31023 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia officinalis L."
 ]
}

 The dataset includes 31023 records from 555 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103205-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5r2n7
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia persica Akhani"
 ]
}

 The dataset includes 77 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103206-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eqbusw
title: Occurrence Download

description: A dataset containing 14093 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyclopterus lumpus Linnaeus, 1758"
 ]
}

 The dataset includes 14093 records from 201 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103207-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9p2a8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia perspolitana Akhani"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103208-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nsn92v
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia oligophylla Aucher ex Benth."
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103210-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vt2n6f
title: Occurrence Download

description: A dataset containing 10175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia procumbens Sm."
 ]
}

 The dataset includes 10175 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103211-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z84qqn
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia omeiana E.Peter"
 ]
}

 The dataset includes 133 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103212-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rgxmh
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Semotrachia euzyga (Tate, 1894)"
 ]
}

 The dataset includes 94 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103213-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25041964
title: A walk through the broiler breeder life: how do footpad dermatitis and gait scores develop from rearing to slaughter?

description: The two most common animal-based indicators used to evaluate leg health in broiler chickens are footpad dermatitis (FPD) and gait scoring, but these indicators are less explored in broiler breeders. This study is the first to investigate FPD and gait scoring in broiler breeders during their lifespan from rearing to end of life. In total, eight flocks were monitored (four Ross and four Hubbard) at five different timepoints, in rearing (5 and 15 weeks of age), during the production period (25 and 45 weeks of age) and at the end of the production period (approximately 60 weeks of age). At each visit, 50 hens and 25 roosters were gait scored (six-point scale) and footpads from another 50 hens and 25 roosters were evaluated (five-point scale) (total <i>n</i> = 3000 breeders, 2000 hens and 1000 roosters). Litter quality and air quality were measured at each visit. The results showed that the overall prevalence of FPD in rearing was low and that it increased towards the end of the production, with a mean FPD score of 2 out of a maximum 4 in the hens, indicating moderate lesions and 1.5 in the roosters. In all houses, the litter was dry and loose. FPD was not related to the litter quality, but to air quality, especially the ammonia concentration (<i>P</i> &lt; 0.001). Overall, the gait score were good, and increased with age in both hens (<i>P</i> &lt; 0.001) and roosters of both hybrids (<i>P</i> &lt; 0.001).
DOI: 10.6084/m9.figshare.25041964.v1
title: A walk through the broiler breeder life: how do footpad dermatitis and gait scores develop from rearing to slaughter?

description: The two most common animal-based indicators used to evaluate leg health in broiler chickens are footpad dermatitis (FPD) and gait scoring, but these indicators are less explored in broiler breeders. This study is the first to investigate FPD and gait scoring in broiler breeders during their lifespan from rearing to end of life. In total, eight flocks were monitored (four Ross and four Hubbard) at five different timepoints, in rearing (5 and 15 weeks of age), during the production period (25 and 45 weeks of age) and at the end of the production period (approximately 60 weeks of age). At each visit, 50 hens and 25 roosters were gait scored (six-point scale) and footpads from another 50 hens and 25 roosters were evaluated (five-point scale) (total <i>n</i> = 3000 breeders, 2000 hens and 1000 roosters). Litter quality and air quality were measured at each visit. The results showed that the overall prevalence of FPD in rearing was low and that it increased towards the end of the production, with a mean FPD score of 2 out of a maximum 4 in the hens, indicating moderate lesions and 1.5 in the roosters. In all houses, the litter was dry and loose. FPD was not related to the litter quality, but to air quality, especially the ammonia concentration (<i>P</i> &lt; 0.001). Overall, the gait score were good, and increased with age in both hens (<i>P</i> &lt; 0.001) and roosters of both hybrids (<i>P</i> &lt; 0.001).
DOI: 10.15468/dl.yb9avh
title: Occurrence Download

description: A dataset containing 101 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia senegalensis A.Chev."
 ]
}

 The dataset includes 101 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103215-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukecz8
title: Occurrence Download

description: A dataset containing 239 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia omerocalyx Hayata"
 ]
}

 The dataset includes 239 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103216-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2kzju6
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salicornia tegetaria (S.Steffen, Mucina & G.Kadereit) Piirainen & G.Kadereit"
 ]
}

 The dataset includes 86 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103217-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z93g8d
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvia pachystachya Trautv."
 ]
}

 The dataset includes 53 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103219-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqh97c
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Peru",
 "TaxonKey is Minthostachys mollis (Benth.) Griseb."
 ]
}

 The dataset includes 197 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103218-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ryc2pg
title: Occurrence Download

description: A dataset containing 486527 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-70.98469 -17.51072,-69.9417 -19.39939,-69.65724 -21.61941,-70.4594 -23.56795,-70.4594 -25.12169,-70.4594 -25.12169,-70.9582 -28.44051,-71.07951 -29.23268,-70.32097 -28.40193,-69.9417 -27.14355,-68.8987 -26.55137,-67.66606 -25.78548,-66.52825 -24.67044,-66.33861 -22.84813,-67.19198 -21.44301,-67.95052 -20.46902,-68.32979 -19.13087,-68.23497 -17.69148,-69.08833 -16.87666,-70.98469 -17.51072))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 486527 records from 428 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0103209-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fngvzr
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Taxidea taxus (Schreber, 1777)",
 "Geometry POLYGON((-120 36,-120 34.5,-118 34.5,-118 36,-120 36))"
 ]
}

 The dataset includes 19 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074400-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3n78h9
title: Occurrence Download

description: A dataset containing 223191 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendrocygna javanica (Horsfield, 1821)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 223191 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006863-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-83688
title: Christmas shopper, Southern California, 1935

description: 4 photographs of Christmas shopping, Southern California, 1935. "Subject: Xmas [sic] shopper; Client: West[er]n Auto Supply, Girald; Original Print Order: 2 ea[ch]; Size: 8x10; Finish: gl[ossy]; Re-Order: 1 ea[ch], 4 #4; Size: 8x10; Finish: gl[ossy]; Job: 11-15-109; Year: 1935" -- on envelope front. "Operator's Report Name: Joe; 4 Original Photographs-Size: 8x10; Amount: 13.00; Extra Charges: G190179" -- on envelope back.
DOI: 10.15468/dl.kdmxyg
title: Occurrence Download

description: A dataset containing 133 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acer rubrum L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "StateProvince is connecticut"
 ]
}

 The dataset includes 133 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074401-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whittington-ouc12218606
title: Xmas, Los Angeles, California, 1940

description: 23 photographs of Christmas merchandise at Bullock's, Los Angeles, CA, 1940. "Subject: X[Christ]mas." "Client: Bullocks; #62; Original print order: 1 ea[ch]; Size: contact; Finish: gl[ossy]; 1 ea[ch] all from 69 to 86 incl[uding] contact; Finish: [gl]ossy; Re-order 1 #67; Size: contact; Finish: gl[ossy]; 1 #71; Size: contact in center of 8x10 gl[ossy]; Year: 1940; Job: 010-23-178" -- on envelope front. "Still life 23" -- on envelope back.
DOI: 10.15468/dl.i2rdam
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perognathus alticolus inexpectatus Huey, 1926"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074406-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-97874
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whittington-ouc12218602
title: Xmas, Los Angeles, California, 1940

description: 23 photographs of Christmas merchandise at Bullock's, Los Angeles, CA, 1940. "Subject: X[Christ]mas." "Client: Bullocks; #62; Original print order: 1 ea[ch]; Size: contact; Finish: gl[ossy]; 1 ea[ch] all from 69 to 86 incl[uding] contact; Finish: [gl]ossy; Re-order 1 #67; Size: contact; Finish: gl[ossy]; 1 #71; Size: contact in center of 8x10 gl[ossy]; Year: 1940; Job: 010-23-178" -- on envelope front. "Still life 23" -- on envelope back.
DOI: 10.15468/dl.ykn5mu
title: Occurrence Download

description: A dataset containing 248131 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 {
 "or" : [
 "Country is El Salvador",
 "Country is Honduras",
 "Country is Belize",
 "Country is Nicaragua",
 "Country is Mexico",
 "Country is Guatemala",
 "Country is Costa Rica"
 ]
 },
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 248131 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074409-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-106639
title: Dick Whittington Photography Collection, 1924-1987
DOI: 10.25549/whit-c170-83218
title: Furniture, Bullock's, Southern California, 1935

description: 7 photographs of furniture, Southern California, 1935. "Subject: Furniture; Client: Bullocks, Crosby; Original Print Order: 1 ea[ch]; Size: contact; Job: 12-2-4; Year: 1935" -- on envelope front. "Operator's Report Name: Joe; 7 Original Photographs-Size: Amount: 15.50; Extra Charges: #91019" -- on envelope back.
DOI: 10.15468/dl.kaqwho
title: Occurrence Download

description: A dataset containing 2740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Urocitellus parryii (Richardson, 1825)",
 "StateProvince is alaska"
 ]
}

 The dataset includes 2740 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074412-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-100110
title: Woman in bedroom, Los Angeles, Calif., 1940

description: 16 photographs of the same woman (probably a model) wearing a night dress and pretending to be asleep, then wake up, use a telephone, and get out of bed, Los Angeles, California, 1940 June 13. "Operator's name: Cross; Model's name: Marion Graham; Reproduction rights sold to: Mayers Company (Edison Company); R. W. Webster Advertising" -- on scrap of envelope.
DOI: 10.15468/dl.zlrziy
title: Occurrence Download

description: A dataset containing 261657 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonum L.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 261657 records from 597 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074413-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-17377
title: Outboard motor races, Cabrillo Beach, Los Angeles, CA, 1931

description: 9 photographs of people at beach and motor boat racing, Los Angeles, CA, 1931. "Subject: Outboard motor races, Cabrillo beach; Client: L.A. playground; Classifications: S- Pleasure boat race; Original print order: 1 ea[ch]; Size: 8x10, approx[imately], 8x10, 5x7, 8x10, 5x7; Finish: 5x7, gl[ossy], D.W. gl[ossy]; Mount: (see Joe), 1 ea[ch] #1, 2, 8, 4, 7, 3, 9, 8x10 gl[ossy]; Re-order: 1 ea[ch], 8,9; 1 ea[ch] # 1, 4; 1 ea[ch] # 1, 3, 8, 9; 1 [ilg]; 1 #1, 1 #9; Year: 1931; Job: 5-29-208" -- on envelope front. "Operator's report: Joe; Original photographs: 8; Size: 8x10; Miles: 50; Amount: 8.00, 2.50, 15.00; 5" @ 3.00; Extra charges: Freidman" -- on envelope back.
DOI: 10.15468/dl.ulqlao
title: Occurrence Download

description: A dataset containing 110963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhamnus L.",
 "Geometry POLYGON((-20.390625 41.508577,-22.5 0,18.984375 -47.989921,128.671875 1.406108,144.140625 0.703107,239.765624 -30.751277,288.984375 -60.930432,322.734375 -35.460669,315.703124 27.683528,296.71875 69.657086,206.015625 78.490551,42.890625 78.061989,-20.390625 41.508577))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 110963 records from 283 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074424-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/whit-c170-100154
title: Portraits, nurse & bride, Los Angeles, Calif., 1940

description: 16 photographs of the same unidentified woman (probably a model), in some dressed as a nurse or a bride, Los Angeles, California, 1940 June 1.
DOI: 10.15468/dl.k4rulb
title: Occurrence Download

description: A dataset containing 179760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chenopodium album L."
 ]
}

 The dataset includes 179760 records from 550 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074432-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgx0jg
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hepatica nobilis Garsault"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016575-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e2h8d3
title: Occurrence Download

description: A dataset containing 882 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Erethizontidae)",
 "HasCoordinate is true",
 "Geometry POLYGON((-92.0115860669999 -33.7422803749999,-28.8770645819999 -33.7422803749999,-28.8770645819999 15.7029483090001,-92.0115860669999 15.7029483090001,-92.0115860669999 -33.7422803749999))"
 ]
}

 The dataset includes 882 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290126-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ovvuax
title: Occurrence Download

description: A dataset containing 87838 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Month is greater than or equal to January",
 "Country is Mexico",
 "TaxonKey is Columbiformes"
 ]
}

 The dataset includes 87838 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002716-150721130643939/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykrgrg
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhamnus bungeana J.J.Vassil."
 ]
}

 The dataset includes 100 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083917-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.