cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17088994
title: Identification of resurrection genes from the transcriptome of dehydrated and rehydrated <i>Selaginella tamariscina</i>

description: <i>Selaginella tamariscina</i> is a lycophyta species that survives under extremely dry conditions via the mechanism of resurrection. This phenomenon involves the regulation of numerous genes that play vital roles in desiccation tolerance and subsequent rehydration. To identify resurrection-related genes, we analyzed the transcriptome between dehydration conditions and rehydration conditions of <i>S. tamariscina</i>. The <i>de novo</i> assembly generated 124,417 transcripts with an average size of 1,000 bp and 87,754 unigenes. Among these genes, 1,267 genes and 634 genes were up and down regulated by rehydration compared to dehydration. To understand gene function, we annotated Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG). The unigenes encoding early light-inducible protein (<i>ELIP</i>) were down-regulated, whereas pentatricopeptide repeat-containing protein (<i>PPR</i>), late embryogenesis abundant proteins (<i>LEA</i>), sucrose nonfermenting protein (<i>SNF</i>), trehalose phosphate phosphatase (<i>TPP</i>), trehalose phosphate synthase (<i>TPS</i>), and ABC transporter G family (<i>ABCG</i>) were significantly up-regulated in response to rehydration conditions by differentially expressed genes (DEGs) analysis. Several studies provide evidence that these genes play a role in stress environment. The <i>ELIP</i> and <i>PPR</i> genes are involved in chloroplast protection during dehydration and rehydration. <i>LEA, SNF</i>, and trehalose genes are known to be oxidant scavengers that protect the cell structure from the deleterious effect of drought. <i>TPP</i> and <i>TPS</i> genes were found in the starch and sucrose metabolism pathways, which are essential sugar-signaling metabolites regulating plant metabolism and other biological processes. <i>ABC-G</i> gene interacts with abscisic acid (ABA) phytohormone in the stomata opening during stress conditions. Our findings provide valuable information and candidate resurrection genes for future functional analysis aimed at improving the drought tolerance of crop plants.
DOI: 10.6084/m9.figshare.17197853.v1
title: Localized expression of the <i>Dwarf14-like2a</i> gene in rice roots on infection of arbuscular mycorrhizal fungus and hydrolysis of <i>rac</i>-GR24 by the encoded protein

description: Strigolactones (SLs) are plant hormones that control diverse aspects of the shoot and root growth and are exuded into the soil as recruitment signals for arbuscular mycorrhizal (AM) fungi. SL signaling in plants is transduced <i>via</i> the α/β-hydrolase receptor Dwarf14 (D14). The D14 family consists of D14, Dwarf14-like (D14L), and Dwarf14-like 2 (D14L2) clades in rice. The D14L receptor is known to condition pre-symbiotic perception of AM fungi. In this study, it was found that the <i>Dwarf14-like2a</i> (<i>D14L2a</i>) gene expression was significantly induced by AM fungal colonization. The transcript of <i>D14L2a</i> appeared not only in mature arbuscule-containing cells but also in epidermal/cortical cells at an early colonization stage and near the elongating intercellular hyphae. <i>D14L2a</i> transcript was detected normally in mycorrhizal roots of <i>str1-2</i> mutant that form stunted arbuscules, suggesting that the gene expression is independent of arbuscule development. Moreover, the recombinant D14L2a protein exhibited hydrolase activity of synthetic SL, <i>rac</i>-GR24. Based on these results, we discussed the role of D14L2 in the establishment of AM symbiosis.
DOI: 10.6084/m9.figshare.16998280.v1
title: Arabidopsis glutamate receptor <i>GLR3.7</i> is involved in abscisic acid response

description: The ionotropic glutamate receptor (iGluR) plays an important role in neuronal signaling in animal cells. There are at least 20 glutamate receptor-like (GLR) genes in <i>Arabidopsis thaliana</i>. These genes are involved in seed germination, root growth, wounding response, stomata closure, <i>etc</i>. A recent study showed that Arabidopsis clade III glutamate receptor <i>GLR3.7</i> is involved in salt stress response. We tested whether <i>GLR3.7</i> is involved in abscisic acid (ABA) response. In the present study, we found that the expression of <i>GLR3.7</i> was reduced by ABA treatment. Under ABA-treated condition, <i>GLR3.7</i> overexpression lines exhibited significantly higher seed germination rate at 60, 72 and 84 h under ABA-treated condition. A point mutation in 14-3-3 binding site of GLR3.7 in GLR3.7-S860A overexpression lines exhibited higher seed germination inhibition under ABA-treated conditions. Our results support that <i>GLR3.7</i> is involved in ABA response in Arabidopsis. In addition, Ser-860 of GLR3.7 appears to be important in ABA response.
DOI: 10.6084/m9.figshare.17197853
title: Localized expression of the <i>Dwarf14-like2a</i> gene in rice roots on infection of arbuscular mycorrhizal fungus and hydrolysis of <i>rac</i>-GR24 by the encoded protein

description: Strigolactones (SLs) are plant hormones that control diverse aspects of the shoot and root growth and are exuded into the soil as recruitment signals for arbuscular mycorrhizal (AM) fungi. SL signaling in plants is transduced <i>via</i> the α/β-hydrolase receptor Dwarf14 (D14). The D14 family consists of D14, Dwarf14-like (D14L), and Dwarf14-like 2 (D14L2) clades in rice. The D14L receptor is known to condition pre-symbiotic perception of AM fungi. In this study, it was found that the <i>Dwarf14-like2a</i> (<i>D14L2a</i>) gene expression was significantly induced by AM fungal colonization. The transcript of <i>D14L2a</i> appeared not only in mature arbuscule-containing cells but also in epidermal/cortical cells at an early colonization stage and near the elongating intercellular hyphae. <i>D14L2a</i> transcript was detected normally in mycorrhizal roots of <i>str1-2</i> mutant that form stunted arbuscules, suggesting that the gene expression is independent of arbuscule development. Moreover, the recombinant D14L2a protein exhibited hydrolase activity of synthetic SL, <i>rac</i>-GR24. Based on these results, we discussed the role of D14L2 in the establishment of AM symbiosis.
DOI: 10.6084/m9.figshare.18853329
title: Biomass allocation in response to accession recognition in <i>Arabidopsis thaliana</i> depends on nutrient availability and plant age

description: Many organisms have evolved to identify and respond to differences in genetic relatedness between conspecifics, allowing them to select between competitive and facilitative strategies to improve fitness. Due to their sessile nature, plants frequently draw from the same pool of nutrients, and the ability to limit competition between closely related conspecifics would be advantageous. Studies with <i>Arabidopsis thaliana</i> have confirmed that plants can detect variations at the accession level and alter their root system architecture (RSA) in response, presumably for regulating nutrient uptake. The phenotypic impact of this accession-recognition on the RSA is influenced by nutrient availability, underscoring the importance of plant-plant recognition in their growth and fitness. Thus far, these observations have been limited to short-term studies (&lt;21 days) of only the RSA of this model angiosperm. Here we exploit nutrient-mediated regulation of accession-recognition to observe how this plant-plant recognition phenomenon influences growth from germination to flowering in <i>A. thaliana</i>. Our work identifies root and shoot traits that are affected by nutrient-mediated accession recognition. By coupling phenotypic assays to mass spectrometry-based studies of primary metabolite distribution, we provide preliminary insight into the biochemical underpinnings of the changes observed during these plant-plant responses. Most notably that late-stage changes in sucrose metabolism in members of the same accession drove early flowering. This work underscores the need to evaluate accession-recognition under the context of nutrient availability and consider responses throughout the plant’s life, not simply at the earliest stages of interaction.
DOI: 10.6084/m9.figshare.16998280
title: Arabidopsis glutamate receptor <i>GLR3.7</i> is involved in abscisic acid response

description: The ionotropic glutamate receptor (iGluR) plays an important role in neuronal signaling in animal cells. There are at least 20 glutamate receptor-like (GLR) genes in <i>Arabidopsis thaliana</i>. These genes are involved in seed germination, root growth, wounding response, stomata closure, <i>etc</i>. A recent study showed that Arabidopsis clade III glutamate receptor <i>GLR3.7</i> is involved in salt stress response. We tested whether <i>GLR3.7</i> is involved in abscisic acid (ABA) response. In the present study, we found that the expression of <i>GLR3.7</i> was reduced by ABA treatment. Under ABA-treated condition, <i>GLR3.7</i> overexpression lines exhibited significantly higher seed germination rate at 60, 72 and 84 h under ABA-treated condition. A point mutation in 14-3-3 binding site of GLR3.7 in GLR3.7-S860A overexpression lines exhibited higher seed germination inhibition under ABA-treated conditions. Our results support that <i>GLR3.7</i> is involved in ABA response in Arabidopsis. In addition, Ser-860 of GLR3.7 appears to be important in ABA response.
DOI: 10.6084/m9.figshare.18853329.v1
title: Biomass allocation in response to accession recognition in <i>Arabidopsis thaliana</i> depends on nutrient availability and plant age

description: Many organisms have evolved to identify and respond to differences in genetic relatedness between conspecifics, allowing them to select between competitive and facilitative strategies to improve fitness. Due to their sessile nature, plants frequently draw from the same pool of nutrients, and the ability to limit competition between closely related conspecifics would be advantageous. Studies with <i>Arabidopsis thaliana</i> have confirmed that plants can detect variations at the accession level and alter their root system architecture (RSA) in response, presumably for regulating nutrient uptake. The phenotypic impact of this accession-recognition on the RSA is influenced by nutrient availability, underscoring the importance of plant-plant recognition in their growth and fitness. Thus far, these observations have been limited to short-term studies (&lt;21 days) of only the RSA of this model angiosperm. Here we exploit nutrient-mediated regulation of accession-recognition to observe how this plant-plant recognition phenomenon influences growth from germination to flowering in <i>A. thaliana</i>. Our work identifies root and shoot traits that are affected by nutrient-mediated accession recognition. By coupling phenotypic assays to mass spectrometry-based studies of primary metabolite distribution, we provide preliminary insight into the biochemical underpinnings of the changes observed during these plant-plant responses. Most notably that late-stage changes in sucrose metabolism in members of the same accession drove early flowering. This work underscores the need to evaluate accession-recognition under the context of nutrient availability and consider responses throughout the plant’s life, not simply at the earliest stages of interaction.
DOI: 10.6084/m9.figshare.16451108
title: Metabolic response to larval herbivory in three <i>Physalis</i> species

description: The <i>Physalis</i> genus includes species of commercial importance due to their ornamental, edible and medicinal properties. These qualities stem from their variety of biologically active compounds. We performed a metabolomic analysis of three <i>Physalis</i> species, i.e., <i>P. angulata, P. grisea</i>, and <i>P. philadelphica</i>, differing in domestication stage and cultivation practices, to determine the degree of inter-species metabolite variation and to test the hypothesis that these related species mount a common metabolomic response to foliar damage caused by <i>Trichoplusia ni</i> larvae. The results indicated that the metabolomic differences detected in the leaves of these species were species-specific and remained even after <i>T. ni</i> herbivory. They also show that each <i>Physalis</i> species displayed a unique response to insect herbivory. This study highlighted the metabolite variation present in <i>Physalis</i> spp. and the persistence of this variability when faced with biotic stressors. Furthermore, it sets an experimental precedent from which highly species-specific metabolites could be identified and subsequently used for plant breeding programs designed to increase insect resistance in <i>Physalis</i> and related plant species.
DOI: 10.6084/m9.figshare.16451108.v3
title: Metabolic response to larval herbivory in three <i>Physalis</i> species

description: The <i>Physalis</i> genus includes species of commercial importance due to their ornamental, edible and medicinal properties. These qualities stem from their variety of biologically active compounds. We performed a metabolomic analysis of three <i>Physalis</i> species, i.e., <i>P. angulata, P. grisea</i>, and <i>P. philadelphica</i>, differing in domestication stage and cultivation practices, to determine the degree of inter-species metabolite variation and to test the hypothesis that these related species mount a common metabolomic response to foliar damage caused by <i>Trichoplusia ni</i> larvae. The results indicated that the metabolomic differences detected in the leaves of these species were species-specific and remained even after <i>T. ni</i> herbivory. They also show that each <i>Physalis</i> species displayed a unique response to insect herbivory. This study highlighted the metabolite variation present in <i>Physalis</i> spp. and the persistence of this variability when faced with biotic stressors. Furthermore, it sets an experimental precedent from which highly species-specific metabolites could be identified and subsequently used for plant breeding programs designed to increase insect resistance in <i>Physalis</i> and related plant species.
DOI: 10.6084/m9.figshare.16784070
title: Identification and expression analysis of <i>PUB</i> genes in tea plant exposed to anthracnose pathogen and drought stresses

description: The plant U-box (PUB) gene family, one of the major ubiquitin ligase families in plants, plays important roles in multiple cellular processes including environmental stress responses and resistance. The function of U-box genes has been well characterized in <i>Arabidopsis</i> and other plants. However, little is known about the tea plant (<i>Camellia sinensis</i>) <i>PUB</i> genes. Here, 89 U-box proteins were identified from the chromosome-scale referenced genome of tea plant. According to the domain organization and phylogenetic analysis, the tea plant PUB family were classified into ten classes, named Class I to X, respectively. Using previously released stress-related RNA-seq data in tea plant, we identified 34 stress-inducible <i>CsPUB</i> genes. Specifically, eight <i>CsPUB</i> genes were expressed differentially under both anthracnose pathogen and drought stresses. Moreover, six of the eight <i>CsPUB</i>s were upregulated in response to these two stresses. Expression profiling performed by qRT-PCR was consistent with the RNA-seq analysis, and stress-related cis-acting elements were identified in the promoter regions of the six upregulated <i>CsPUB</i> genes. These results strongly implied the putative functions of U-box ligase genes in response to biotic and abiotic stresses in tea plant.
DOI: 10.6084/m9.figshare.16451108.v2
title: Metabolic response to larval herbivory in three <i>Physalis</i> species

description: The <i>Physalis</i> genus includes species of commercial importance due to their ornamental, edible and medicinal properties. These qualities stem from their variety of biologically active compounds. We performed a metabolomic analysis of three <i>Physalis</i> species, i.e., <i>P. angulata, P. grisea</i>, and <i>P. philadelphica</i>, differing in domestication stage and cultivation practices, to determine the degree of inter-species metabolite variation and to test the hypothesis that these related species mount a common metabolomic response to foliar damage caused by <i>Trichoplusia ni</i> larvae. The results indicated that the metabolomic differences detected in the leaves of these species were species-specific and remained even after <i>T. ni</i> herbivory. They also show that each <i>Physalis</i> species displayed a unique response to insect herbivory. This study highlighted the metabolite variation present in <i>Physalis</i> spp. and the persistence of this variability when faced with biotic stressors. Furthermore, it sets an experimental precedent from which highly species-specific metabolites could be identified and subsequently used for plant breeding programs designed to increase insect resistance in <i>Physalis</i> and related plant species.
DOI: 10.6084/m9.figshare.16784070.v1
title: Identification and expression analysis of <i>PUB</i> genes in tea plant exposed to anthracnose pathogen and drought stresses

description: The plant U-box (PUB) gene family, one of the major ubiquitin ligase families in plants, plays important roles in multiple cellular processes including environmental stress responses and resistance. The function of U-box genes has been well characterized in <i>Arabidopsis</i> and other plants. However, little is known about the tea plant (<i>Camellia sinensis</i>) <i>PUB</i> genes. Here, 89 U-box proteins were identified from the chromosome-scale referenced genome of tea plant. According to the domain organization and phylogenetic analysis, the tea plant PUB family were classified into ten classes, named Class I to X, respectively. Using previously released stress-related RNA-seq data in tea plant, we identified 34 stress-inducible <i>CsPUB</i> genes. Specifically, eight <i>CsPUB</i> genes were expressed differentially under both anthracnose pathogen and drought stresses. Moreover, six of the eight <i>CsPUB</i>s were upregulated in response to these two stresses. Expression profiling performed by qRT-PCR was consistent with the RNA-seq analysis, and stress-related cis-acting elements were identified in the promoter regions of the six upregulated <i>CsPUB</i> genes. These results strongly implied the putative functions of U-box ligase genes in response to biotic and abiotic stresses in tea plant.
DOI: 10.5281/zenodo.6541168
title: Dataset for "Investigating multiple observations around a seismic gap during the Lushan earthquake in Sichuan, China"

description: "MsCatalog.csv" includes the catalog used in the paper. "gnss2013" includes the daily horizontal surface displacement (E and N components) in the South China Block frame in 2013.
DOI: 10.6084/m9.figshare.19752850
title: Adaptability analysis of snow at Zhangjiakou competition zone of the Beijing Olympic Winter Games in the next 30 years

description: Available data for manuscript "Adaptability analysis of snow at Zhangjiakou competition zone of the Beijing Olympic Winter Games in the next 30 years"
DOI: 10.6084/m9.figshare.19746589
title: Data needed for this study

description: The data needed for this study are being created in Excel.
DOI: 10.6084/m9.figshare.19746589.v2
title: Data needed for this study

description: The data needed for this study are being created in Excel.
DOI: 10.6084/m9.figshare.19746589.v1
title: Data needed for this study

description: The data needed for this study are being created in Excel.
DOI: 10.3886/e131102v2-118040
title: Core Academic Language Skills Instrument (CALS-I) & Evaluación de Lenguaje Académico (ELA)

description: <b>Core Academic Language Skills Instrument (CALS-I) & Evaluación de Lenguaje Académico (ELA)<br><br></b>The Core Academic Language Skills Instrument (CALS-I) (English) and Evaluación de Lenguaje Académico (ELA) (Spanish) are psychometrically-robust measures designed to capture academic language skills in 4-8th grade students. <b><br></b>
DOI: 10.14457/cu.the.2000.478
title: The establishment of a self-help clinic for HIV positive mothers in Bamrasnaradura Hospital
DOI: 10.14457/cu.the.2000.479
title: การจัดทำแผน 5 ปี เพื่อพัฒนาบุคลากรพยาบาลโรงพยาบาลเลิดสิน
DOI: 10.14457/cu.the.2000.480
title: Improving physicians' rational use of antibiotics in children under 5 years old with acute respiratory infection (ARI) through face-to-face education and implementation of standard treatement guideline in Ba Vi district hospital, Vietnam
DOI: 10.14457/cu.the.2001.650
title: Incidence of tuberculosis and associated factors among HIV-infected persons registered for isoniazid preventive therapy in Chiang Rai, Thailand
DOI: 10.6084/m9.figshare.15149396
title: Using cognitive work analysis to identify competencies for human factors and ergonomics practitioners

description: While several competency frameworks have been proposed for Human Factors and Ergonomics (HFE) practitioners, these are not commonly based on structured analyses. The aim of this research was to develop a sociotechnical systems model of the HFE practitioner role in Australia and identify the competencies required to fulfil the role. Study One applied the Work Domain Analysis phase of cognitive work analysis (CWA) to model the HFE practitioner role. Model refinement was undertaken with seven subject matter experts. In Study Two, the model was used to elicit the competencies (knowledge, skills, abilities, other characteristics) required for successful performance, via a survey of 28 HFE practitioners. Most competencies related to skills (i.e. communication skills) and knowledge (i.e. domain knowledge). Gaps in competencies were also identified, linked to a lack of HFE education pathways in Australia. The findings have practical utility for designing HFE practitioner roles and educational programs. <b>Practitioner summary:</b> Cognitive work analysis provided a structured analysis of the role of the Human Factors and Ergonomics (HFE) practitioner and to support the identification of competencies. The results suggest that HFE practitioners are generalists rather than specialists and have implications for the job design and education of HFE practitioners. <b>Abbreviations:</b> BCPE: board of certification in professional ergonomics; CIEHF: chartered institute of ergonomics and human factors; CWA: cognitive work analysis; HFE: human factors and ergonomics; HFESA: human factors and ergonomics society of Australia; IEA: International Ergonomics Association; KSAO: knowledge, skills, abilities and other characteristics; O*NET: occupation information network; SME: subject matter expert; SRK: skills, rules, knowledge; UK: United Kingdom; USA: United States of America; WDA: work domain analysis