cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6429641.v1
title: Diagnostic laboratory standardization and validation of platelet transmission electron microscopy

description: Platelet transmission electron microscopy (PTEM) is considered the gold standard test for assessing distinct ultrastructural abnormalities in inherited platelet disorders (IPDs). Nevertheless, PTEM remains mainly a research tool due to the lack of standardized procedures, a validated dense granule (DG) count reference range, and standardized image interpretation criteria. The aim of this study was to standardize and validate PTEM as a clinical laboratory test. Based on previously established methods, we optimized and standardized preanalytical, analytical, and postanalytical procedures for both whole mount (WM) and thin section (TS) PTEM. Mean number of DG/platelet (plt), percentage of plts without DG, platelet count (PC), mean platelet volume (MPV), immature platelet fraction (IPF), and plt light transmission aggregometry analyses were measured on blood samples from 113 healthy donors. Quantile regression was used to estimate the reference range for DG/plt, and linear regression was used to assess the association of DG/plt with other plt measurements. All PTEM procedures were standardized using commercially available materials and reagents. DG interpretation criteria were established based on previous publications and expert consensus, and resulted in improved operator agreement. Mean DG/plt was stable for 2 days after blood sample collection. The median within patient coefficient of variation for mean DG/plt was 22.2%; the mean DG/plt reference range (mid-95th %) was 1.2–4.0. Mean DG/plt was associated with IPF (<i>p </i>= .01, R<sup>2</sup> = 0.06) but not age, sex, PC, MPV, or plt maximum aggregation or primary slope of aggregation (<i>p </i>&gt; .17, R<sup>2</sup> &lt; 0.02). Baseline ultrastructural features were established for TS-PTEM. PTEM was validated using samples from patients with previously established diagnoses of IPDs. Standardization and validation of PTEM procedures and interpretation, and establishment of the normal mean DG/plt reference range and PTEM baseline ultrastructural features, will facilitate implementation of PTEM as a valid clinical laboratory test for evaluating ultrastructural abnormalities in IPDs.
DOI: 10.17037/data.00003702
title: Medical survey data to monitor trends in HIV epidemiology and assess the prevalence of Non-Communicable Diseases (NCDs) and associated factors in Central Uganda

description: An anonymized dataset containing survey responses of 6808 adults, aged 16 or more years, in the General Population Cohort of Central Uganda. Longitudinal data was collected through bi-annual medical surveys to monitor trends in HIV epidemiology, and assess the prevalence of Non-Communicable Diseases (NCDs) and associated factors. Variables include socio-demographic information, update of HPV Vaccination, knowledge of HIV, alcohol consumption, tobacco use, COVID-19 symptoms, the effect of COVID-19 lockdown on health service outcomes, anthropometric measurements, and HIV status. Files will be made available via https://apps.mrcuganda.org/mrcdatavisibility/Home/
DOI: 10.6084/m9.figshare.20581056
title: Additional file 10 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 10: Table S9. Primers used in the luciferase reporter assay of the activity of the predicted ABRE positioned upstream of Zm00001d023299.
DOI: 10.6084/m9.figshare.6953948.v1
title: Additional file 2: of The altered activity of P53 signaling pathway by STK11 gene mutations and its cancer phenotype in Peutz-Jeghers syndrome

description: Figure S1. Flow diagram of patients enrollment. PJS indicates Peutz-Jeghers syndrome. Figue S2. The predicted protein structure of 8 truncating mutations (A) and the PolyPhen-2 prediction results for 5 missense mutations (B). NLS, nuclear location signal. Figure S3. Western blot results of the mutation investigated. Targeted protein: STK11; internal reference: GAPDH. (ZIP 2634 kb)
DOI: 10.6084/m9.figshare.6429641
title: Diagnostic laboratory standardization and validation of platelet transmission electron microscopy

description: Platelet transmission electron microscopy (PTEM) is considered the gold standard test for assessing distinct ultrastructural abnormalities in inherited platelet disorders (IPDs). Nevertheless, PTEM remains mainly a research tool due to the lack of standardized procedures, a validated dense granule (DG) count reference range, and standardized image interpretation criteria. The aim of this study was to standardize and validate PTEM as a clinical laboratory test. Based on previously established methods, we optimized and standardized preanalytical, analytical, and postanalytical procedures for both whole mount (WM) and thin section (TS) PTEM. Mean number of DG/platelet (plt), percentage of plts without DG, platelet count (PC), mean platelet volume (MPV), immature platelet fraction (IPF), and plt light transmission aggregometry analyses were measured on blood samples from 113 healthy donors. Quantile regression was used to estimate the reference range for DG/plt, and linear regression was used to assess the association of DG/plt with other plt measurements. All PTEM procedures were standardized using commercially available materials and reagents. DG interpretation criteria were established based on previous publications and expert consensus, and resulted in improved operator agreement. Mean DG/plt was stable for 2 days after blood sample collection. The median within patient coefficient of variation for mean DG/plt was 22.2%; the mean DG/plt reference range (mid-95th %) was 1.2–4.0. Mean DG/plt was associated with IPF (<i>p </i>= .01, R<sup>2</sup> = 0.06) but not age, sex, PC, MPV, or plt maximum aggregation or primary slope of aggregation (<i>p </i>&gt; .17, R<sup>2</sup> &lt; 0.02). Baseline ultrastructural features were established for TS-PTEM. PTEM was validated using samples from patients with previously established diagnoses of IPDs. Standardization and validation of PTEM procedures and interpretation, and establishment of the normal mean DG/plt reference range and PTEM baseline ultrastructural features, will facilitate implementation of PTEM as a valid clinical laboratory test for evaluating ultrastructural abnormalities in IPDs.
DOI: 10.6084/m9.figshare.20581101.v1
title: Additional file 6 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 6: Table S5. Enrichment of molecular function GO items for each gene PAV cluster.
DOI: 10.6084/m9.figshare.6953948
title: Additional file 2: of The altered activity of P53 signaling pathway by STK11 gene mutations and its cancer phenotype in Peutz-Jeghers syndrome

description: Figure S1. Flow diagram of patients enrollment. PJS indicates Peutz-Jeghers syndrome. Figue S2. The predicted protein structure of 8 truncating mutations (A) and the PolyPhen-2 prediction results for 5 missense mutations (B). NLS, nuclear location signal. Figure S3. Western blot results of the mutation investigated. Targeted protein: STK11; internal reference: GAPDH. (ZIP 2634 kb)
DOI: 10.6084/m9.figshare.20581092
title: Additional file 4 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 4: Table S3. Statistics of pan-Zea gene annotations
DOI: 10.6084/m9.figshare.20581116.v1
title: Additional file 9 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 9: Table S8. Information of QTLs that cannot be detected by SNPs.
DOI: 10.6084/m9.figshare.20581095
title: Additional file 5 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 5: Tables S4. Pan Zea gene features.
DOI: 10.6084/m9.figshare.20581101
title: Additional file 6 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 6: Table S5. Enrichment of molecular function GO items for each gene PAV cluster.
DOI: 10.6084/m9.figshare.20581107
title: Additional file 7 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 7: Table S6. Enrichment of KEGG ontology for each gene PAV cluster.
DOI: 10.24403/jp.1328807
title: Heine, R.: Lithops : lebende Steine. - Leipzig ; Radebeul : Neumann Verlag, 1986 / [rezensiert von] H. Manitz
DOI: 10.24403/jp.1328808
title: Neue Namenskombinationen bei Höheren Pilzen / Stephan Rauschert
DOI: 10.6084/m9.figshare.8002310
title: Additional file 4: of Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

description: Dataset 2. Raw data of amino acid profiling. (CSV 14 kb)
DOI: 10.24403/jp.1328809
title: Wolsch, J.: Zeitbombe Luftverschmutzung durch Schadstoffe und Radioaktivität. - Berlin ; Hamburg : Verlag Paul Parey, 1987 / [rezensiert von] W. Heinrich
DOI: 10.24403/jp.1328810
title: Ein bisher unbekannter Rostpilz aus Asien : Uromyces mongolicus spec. nov. / Uwe Braun und Gerald Hirsch
DOI: 10.5258/soton/d2826
title: Dataset in support of the paper "Fully integrated Si-Rich silicon nitride wavelength converter based on Bragg scattering intermodal four-wave mixing"

description: This dataset supports the publication "Fully integrated Si-Rich silicon nitride wavelength converter based on Bragg scattering intermodal four-wave mixing" presented at European Conference on Optical Communications 2023

This dataset contains:
data_figures.xlsx: this file is an excel file with different tabs. In each tab it is possible to find the data that have been used to generate each plot of the article, with the corresponding "X axis" data and "Y axis" data . Each tab is named accordingly to the respective figure in the article.

Related projects:
Silicon-rich silicon nitride Nonlinear Integrated Photonic ciRcuits & Systems (juNIPeRS)
DOI: 10.6084/m9.figshare.20581107.v1
title: Additional file 7 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 7: Table S6. Enrichment of KEGG ontology for each gene PAV cluster.
DOI: 10.6084/m9.figshare.20581056.v1
title: Additional file 10 of A pan-Zea genome map for enhancing maize improvement

description: Additional file 10: Table S9. Primers used in the luciferase reporter assay of the activity of the predicted ABRE positioned upstream of Zm00001d023299.
DOI: 10.24403/jp.1328811
title: Wirth, V.: Die Flechten Baden-Württembergs : Verbreitungsatlas. - Stuttgart : Verlag Eugen Ulmer, 1987 / [rezensiert von] P. Scholz
DOI: 10.6084/m9.figshare.8002391
title: MOESM4 of Abnormal level of CUL4B-mediated histone H2A ubiquitination causes disruptive HOX gene expression

description: Additional file 4: Table S3. KEGG CUL4B PPI_interation_pathway.
DOI: 10.6084/m9.figshare.22682722
title: m<sup>6</sup>A-modification regulated circ-CCT3 acts as the sponge of miR-378a-3p to promote hepatocellular carcinoma progression

description: <b>Background:</b> Circular RNA (circRNA) plays a critical role in tumour progression. Circ-CCT3, a particularly abundant circRNA, was proposed to be involved in tumorigenesis. However, the role of circ-CCT3 in hepatocellular carcinoma remains elusive.<b>Methods:</b> Here, circ-CCT3 (a circRNA derived from exons 3, 4 and 5 of the CCT3 gene, hsa_circ_0004680) was identified by circRNA microarray and validated by qRT-PCR. RNA immunoprecipitation (RIP) was performed to confirm the binding between ALKBH5 along with METTL3 and circ-CCT3. Methylated RNA Immunoprecipitation (MeRIP) was used to detect the N6-methyladenosine (m <sup>2</sup>A) levels of circ-CCT3. CircRNAs in vivo precipitation, luciferase reporter assay, biotin-coupled microRNA capture, and fluorescence in situ hybridization were conducted to assess the interaction between circ-CCT3 and miR-378a-3p. The functions of circ-CCT3 in HCC were evaluated both in vitro and in vivo.<b>Results:</b> We demonstrated that circ-CCT3 was highly expressed in HCC which indicated the poor prognosis. Circ-CCT3 expression served as an independent risk factor for overall survival in patients with HCC. Knocking-down of circ-CCT3 inhibited the proliferation, invasion and migration of HCC cells, and angiogenesis of HUVEC. Mechanistically, ALKBH5 and METTL3 could bind and regulate m A-modification of circ-CCT3. Further, circ-CCT3 upregulated the expression of FLT-1 by sponging miR-378a-3p.<b>Conclusions:</b> Circ-CCT3 was significantly up-regulated in HCC and promoted liver cancer development via miR-378a-3p-FLT1 axis. It was also found that circ-CCT3 was under m A-modification mediated by ALKBH5 and METTL3. Our study highlights circ-CCT3 as a potential therapeutic target of HCC treatment, which provides a novel understanding on mechanisms of circRNAs in HCC progression.
DOI: 10.6084/m9.figshare.12721018
title: Additional file 1 of Genome-wide identification and expression analysis of YTH domain-containing RNA-binding protein family in common wheat

description: Additional file 1. Sequences of TaYTHs.
DOI: 10.6084/m9.figshare.20057402
title: Additional file 1 of Development and validation of a novel mitophagy-related gene prognostic signature for glioblastoma multiforme

description: Additional file 1.
DOI: 10.6084/m9.figshare.22682722.v1
title: m<sup>6</sup>A-modification regulated circ-CCT3 acts as the sponge of miR-378a-3p to promote hepatocellular carcinoma progression

description: <b>Background:</b> Circular RNA (circRNA) plays a critical role in tumour progression. Circ-CCT3, a particularly abundant circRNA, was proposed to be involved in tumorigenesis. However, the role of circ-CCT3 in hepatocellular carcinoma remains elusive.<b>Methods:</b> Here, circ-CCT3 (a circRNA derived from exons 3, 4 and 5 of the CCT3 gene, hsa_circ_0004680) was identified by circRNA microarray and validated by qRT-PCR. RNA immunoprecipitation (RIP) was performed to confirm the binding between ALKBH5 along with METTL3 and circ-CCT3. Methylated RNA Immunoprecipitation (MeRIP) was used to detect the N6-methyladenosine (m <sup>2</sup>A) levels of circ-CCT3. CircRNAs in vivo precipitation, luciferase reporter assay, biotin-coupled microRNA capture, and fluorescence in situ hybridization were conducted to assess the interaction between circ-CCT3 and miR-378a-3p. The functions of circ-CCT3 in HCC were evaluated both in vitro and in vivo.<b>Results:</b> We demonstrated that circ-CCT3 was highly expressed in HCC which indicated the poor prognosis. Circ-CCT3 expression served as an independent risk factor for overall survival in patients with HCC. Knocking-down of circ-CCT3 inhibited the proliferation, invasion and migration of HCC cells, and angiogenesis of HUVEC. Mechanistically, ALKBH5 and METTL3 could bind and regulate m A-modification of circ-CCT3. Further, circ-CCT3 upregulated the expression of FLT-1 by sponging miR-378a-3p.<b>Conclusions:</b> Circ-CCT3 was significantly up-regulated in HCC and promoted liver cancer development via miR-378a-3p-FLT1 axis. It was also found that circ-CCT3 was under m A-modification mediated by ALKBH5 and METTL3. Our study highlights circ-CCT3 as a potential therapeutic target of HCC treatment, which provides a novel understanding on mechanisms of circRNAs in HCC progression.
DOI: 10.6084/m9.figshare.20057408
title: Additional file 3 of Development and validation of a novel mitophagy-related gene prognostic signature for glioblastoma multiforme

description: Additional file 3.
DOI: 10.6084/m9.figshare.20056781
title: Additional file 2 of A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning

description: Additional file 2: The training data of hyperspectral imaging.
DOI: 10.6084/m9.figshare.17118923.v1
title: Dione Elliptical Crater Map Package

description: ArcGIS Map package file to accompany Ferguson et al., 2021/22. This includes all final crater layers used to conduct the analysis. File made in ArcMap 10.8.1
DOI: 10.6073/pasta/d318e3b1691898448548f163ea708171
title: Field-Collected Spectral Reflectance of Dominant Vegetation at the Sevilleta National Wildlife Refuge

description: This dataset includes field-collected spectral reflectance of dominant vegetation species in grassland and shrubland at the Sevilleta National Wildlife Refuge collected monthly May – September 2019. A spectroradiometer was used to collect the percent spectral reflectance of electromagnetic radiation (range 400-2500nm) of a sample of dominant vegetation species ("spectra"), yielding a spectral curve for each species. At least ten individuals per species were sampled. These data form a spectral library which was used to calibrate a multiple-endmember spectral mixture analysis (MESMA) of satellite imagery of the Sevilleta NWR, as part of an ongoing collaboration between the LTER and the Center for the Advancement of Spatial Informatics Research and Education (ASPIRE). Ultimately, we aim to produce fractional images of green vegetation, non-photosynthetic vegetation, bare soil, and shade to form a synoptic thirty-year record of vegetation dynamics at the Refuge. The spectral library can be referenced by future researchers using remote sensing methods to examine vegetation dynamics at the Sevilleta NWR.
DOI: 10.6084/m9.figshare.17118926
title: Crater Count Files

description: Crater counting files to accompany Ferguson et al., 2021/22 in Earth and Planetary Science Letters. This includes all crater information used to conduct the analysis and includes diameters, lat/lon, ellipticity, major axis azimuth, and minor axis diameter.
DOI: 10.23728/b2share.c7f91108947f4ef0bd9083f5a6e29528
title: Blanco-Fernandez et al 2021 metadata

description: Metadata of DNA sequences obtained from fish samples
DOI: 10.6073/pasta/5f8f6d12d9c8df2c26d6061bc2972599
title: SBC LTER: Reef: Bottom Temperature: Continuous water temperature, ongoing since 2000

description: Giant kelp forests and the organisms living within them are exposed to a variable environment where biotic and abiotic drivers may affect populations and biological processes on the scale of hours to decades. To examine temporal and spatial patterns of temperature in giant kelp forests, SBC has measured ambient water temperature at nine reef sites located along the mainland coast of the Santa Barbara Channel and at two sites on the north side Santa Cruz Island beginning in 2000. Two submersible temperature loggers, sampling every 30 minutes and offset from each other by 15 minutes, are deployed so that data is recorded every 15 minutes at each site. Temperature loggers were retrieved and replaced bi-annually with a new logger, typically in the early summer (June-July) and in early winter (January-March). These temperature loggers measure temperature in water within a range of -20°C to 30°C, and accuracy of ± 0.20°C at 25°C.
DOI: 10.21223/eqac70/d3j59w
title: 02_Data_dictionary.tab

description: :unav
DOI: 10.21223/eqac70/xmqkyy
title: 01_LaMolina_Lima.xls

description: :unav
DOI: 10.21223/eqac70
title: Dataset for: Meteorological data at La Molina CIP experimental station from 1975 to 2001

description: In the present dataset, daily weather data at La Molina CIP Experimental Station from January 1975 to September 2001 is available. The meteorological variables are the following: Maximum and minimum Air temperature (°C), solar radiation (W m^-2) and rain (mm).
DOI: 10.5281/zenodo.5750864
title: AndrewBengsen/aerial_shoot_deer_release: Initial release

description: Data and code accompanying: Bengsen, A. J., Forsyth, D. M., Pople, A., Brennan, M., Amos, M., Leeson, M., Cox, T. E., Gray, B., Orgill, O., Hampton, J. O., Crittle, T. and Haebich, K. (in review). Effectiveness and costs of helicopter-based shooting of deer. Wildlife Research.
DOI: 10.21223/pd9bay/cr5fz0
title: 02_Data_dictionary.tab

description: :unav
DOI: 10.21223/pd9bay/slzdok
title: 01_SanRamon_Junin.xls

description: :unav
DOI: 10.21223/pd9bay
title: Dataset for: Meteorological data at San Ramon CIP experimental station from 1974 to 2002

description: In the present dataset, daily weather data at San Ramon CIP Experimental Station from January 1974 to December 2002 is available. The meteorological variables are the following: Maximum and minimum Air temperature (°C), solar radiation (W m^-2) and rain (mm).
DOI: 10.21223/llg1ho/ckc6et
title: 02_Data_dictionary.tab

description: :unav
DOI: 10.21223/llg1ho/incwj4
title: 01_LaVictoria_Junin.xls

description: :unav
DOI: 10.21223/llg1ho
title: Dataset for: Meteorological data at La Victoria CIP experimental station from 1976 to 2000

description: In the present dataset, daily weather data at La Victoria Experimental Station from January 1976 to December 2000 is available. The meteorological variables are the following: Maximum and minimum Air temperature (°C), solar radiation (W m^-2) and rain (mm).
DOI: 10.5281/zenodo.5745755
title: Dataset_Scoping review_Impact COVID-19 for patients with cardiac diseases

description: Data on which the conclusions of the study "<strong><em>The impact of the COVID-19 pandemic on hospital services for patients with cardiac diseases: a scoping review</em></strong>" rely, namely: articles included in the Scoping Review and performance indicators extracted. Preprint of the study available at: <strong>https://www.medrxiv.org/content/10.1101/2021.12.01.21267100v1</strong>.
DOI: 10.5281/zenodo.5745754
title: Dataset_Scoping review_Impact COVID-19 for patients with cardiac diseases

description: Data on which the conclusions of the study "<strong><em>The impact of the COVID-19 pandemic on hospital services for patients with cardiac diseases: a scoping review</em></strong>" rely, namely: articles included in the Scoping Review and performance indicators extracted. Preprint of the study available at: <strong>https://www.medrxiv.org/content/10.1101/2021.12.01.21267100v1</strong>.
DOI: 10.25612/837.rdb506y63571
title: Counts of Manufacturing Businesses - Houston MSA - 2018-2021

description: Counts of manufacturing businesses in the Houston MSA by year (2018-2021), NAICS, number of employees, and revenue category. Data derived from the Data Axle Business dataset.
DOI: 10.5281/zenodo.4849263
title: AndrewBengsen/Wild deer spatial mark-resight models and data

description: All models checked and producing expected output.
DOI: 10.5281/zenodo.4771435
title: AndrewBengsen/Wild deer spatial mark-resight models and data

description: All models checked and producing expected output.
DOI: 10.21223/0x6t54/fbpnka
title: 02_Data_Dictionary.tab

description: :unav
DOI: 10.21223/0x6t54/haixzl
title: 01_LaMolina_Lima.tab

description: :unav
DOI: 10.21223/0x6t54
title: Dataset for: Meteorological data at La Molina CIP experimental station from 2004 to 2012

description: In the present dataset, hourly meteorological data at La Molina CIP Experimental Station from July 2004 to December 2012 is available. The meteorological variables are the following variables: Air temperature (°C), relative humidity (%), vapor pressure deficit (kPa), wind speed (m s^-1), wind direction (cardinals direction of compass rose), solar radiation (W m^-2), atmospheric pressure (hPa), rain (mm) and potential evapotranspiration (mm). Data from an automatic weather station Vantage Pro Plus.