cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3560136
title: Appendix A. Construction of the multistate mark–recapture model.

description: Construction of the multistate mark–recapture model.
DOI: 10.6084/m9.figshare.3560136.v1
title: Appendix A. Construction of the multistate mark–recapture model.

description: Construction of the multistate mark–recapture model.
DOI: 10.6084/m9.figshare.3560133
title: Appendix A. Implementation of the new dispersal model in E-SURGE.

description: Implementation of the new dispersal model in E-SURGE.
DOI: 10.6084/m9.figshare.3560133.v1
title: Appendix A. Implementation of the new dispersal model in E-SURGE.

description: Implementation of the new dispersal model in E-SURGE.
DOI: 10.6084/m9.figshare.3560130
title: Supplement 1. R code to build the data set for analyses in E-SURGE.

description: File List RcodeSupplement_Lagrangeetal.txt (MD5: ab662f6c84c3d21ec6268f9c75e5783f) Partmetadata_Lagrangeetal.txt (MD5: 8f036984d66256ca5d06ac711804453c) Description The RcodeSupplement_Lagrangeetal.txt file provides R code to convert the raw data in the format required to carry out the analyses in E-SURGE. The Partmetadata_Lagrangeetal.txt file is a tab-separated file. It contains a part of the raw data on the captured Tree swallows with the localization, date and individual information. Column definitions idclutch (concatenation of the capture year, number of the farm, number of the nest boxes and number of the nest) day (julian day of the capture) ring (ring of the bird) sex (genetic sex by default, otherwise morphological sex determining on the field) farm (farm number of the capture) year of the capture age (females: Second Year (SY) or After Second Year (ASY), males: After Hatching Year (AHY))
DOI: 10.6084/m9.figshare.3560130.v1
title: Supplement 1. R code to build the data set for analyses in E-SURGE.

description: File List RcodeSupplement_Lagrangeetal.txt (MD5: ab662f6c84c3d21ec6268f9c75e5783f) Partmetadata_Lagrangeetal.txt (MD5: 8f036984d66256ca5d06ac711804453c) Description The RcodeSupplement_Lagrangeetal.txt file provides R code to convert the raw data in the format required to carry out the analyses in E-SURGE. The Partmetadata_Lagrangeetal.txt file is a tab-separated file. It contains a part of the raw data on the captured Tree swallows with the localization, date and individual information. Column definitions idclutch (concatenation of the capture year, number of the farm, number of the nest boxes and number of the nest) day (julian day of the capture) ring (ring of the bird) sex (genetic sex by default, otherwise morphological sex determining on the field) farm (farm number of the capture) year of the capture age (females: Second Year (SY) or After Second Year (ASY), males: After Hatching Year (AHY))
DOI: 10.6084/m9.figshare.3560127
title: Appendix A. Examples of the predator–prey model with logistic growth of prey.

description: Examples of the predator–prey model with logistic growth of prey.
DOI: 10.6084/m9.figshare.3560124
title: Appendix B. Effects of the trade-off between defense and growth in defended prey on bistability.

description: Effects of the trade-off between defense and growth in defended prey on bistability.
DOI: 10.6084/m9.figshare.3560124.v1
title: Appendix B. Effects of the trade-off between defense and growth in defended prey on bistability.

description: Effects of the trade-off between defense and growth in defended prey on bistability.
DOI: 10.6084/m9.figshare.3560121
title: Appendix C. Comparison of the scaled model and the full model.

description: Comparison of the scaled model and the full model.
DOI: 10.6084/m9.figshare.3560121.v1
title: Appendix C. Comparison of the scaled model and the full model.

description: Comparison of the scaled model and the full model.
DOI: 10.6084/m9.figshare.3560118
title: Appendix D. Effects of invasion timing and propagule size in the bistabilities 1a, 1b, 2b, 3a, and 3b of the chemostat model.

description: Effects of invasion timing and propagule size in the bistabilities 1a, 1b, 2b, 3a, and 3b of the chemostat model.
DOI: 10.6084/m9.figshare.3560118.v1
title: Appendix D. Effects of invasion timing and propagule size in the bistabilities 1a, 1b, 2b, 3a, and 3b of the chemostat model.

description: Effects of invasion timing and propagule size in the bistabilities 1a, 1b, 2b, 3a, and 3b of the chemostat model.
DOI: 10.6084/m9.figshare.3560115
title: Appendix E. Three-dimensional views of the time-varying dose–response curve and the phase space representation.

description: Three-dimensional views of the time-varying dose–response curve and the phase space representation.
DOI: 10.6084/m9.figshare.3560115.v1
title: Appendix E. Three-dimensional views of the time-varying dose–response curve and the phase space representation.

description: Three-dimensional views of the time-varying dose–response curve and the phase space representation.
DOI: 10.6084/m9.figshare.3560112
title: Appendix F. Examples of the simple Lotka-Volterra model.

description: Examples of the simple Lotka-Volterra model.
DOI: 10.6084/m9.figshare.3560109
title: Appendix G. Comparing ecological and evolutionary dynamics in the bistability 3b.

description: Comparing ecological and evolutionary dynamics in the bistability 3b.
DOI: 10.6084/m9.figshare.3560109.v1
title: Appendix G. Comparing ecological and evolutionary dynamics in the bistability 3b.

description: Comparing ecological and evolutionary dynamics in the bistability 3b.
DOI: 10.6084/m9.figshare.3560106
title: Appendix A. Generation of the time-dependent connectivity matrices.

description: Generation of the time-dependent connectivity matrices.
DOI: 10.6084/m9.figshare.3560106.v1
title: Appendix A. Generation of the time-dependent connectivity matrices.

description: Generation of the time-dependent connectivity matrices.
DOI: 10.6084/m9.figshare.3560103
title: Appendix B. A generalized invasibility criteria.

description: A generalized invasibility criteria.
DOI: 10.6084/m9.figshare.3560103.v1
title: Appendix B. A generalized invasibility criteria.

description: A generalized invasibility criteria.
DOI: 10.6084/m9.figshare.3560100
title: Supplement 1. MATLAB source code of the metacommunity model.

description: File List metapop2.m (MD5: 2301818e83f5d85d6552796e5e6e9c99) Description The MATLAB function metapop2 integrates forward the two species metacommunity model under the various scenarios considered in the study, outputting the abundance in each patch of each species at each time step. Full details of the input and output arguments are given at the beginning of the file.
DOI: 10.6084/m9.figshare.3560097
title: Appendix A. A color version of Plate 1 photographs of a shallow subtidal area at Mission Bay (San Diego, California, USA) showing eelgrass and ghost shrimp are patchily distributed with abrupt ecotone transitions.

description: A color version of Plate 1 photographs of a shallow subtidal area at Mission Bay (San Diego, California, USA) showing eelgrass and ghost shrimp are patchily distributed with abrupt ecotone transitions.
DOI: 10.6084/m9.figshare.3560097.v1
title: Appendix A. A color version of Plate 1 photographs of a shallow subtidal area at Mission Bay (San Diego, California, USA) showing eelgrass and ghost shrimp are patchily distributed with abrupt ecotone transitions.

description: A color version of Plate 1 photographs of a shallow subtidal area at Mission Bay (San Diego, California, USA) showing eelgrass and ghost shrimp are patchily distributed with abrupt ecotone transitions.
DOI: 10.6084/m9.figshare.3560094
title: Appendix B. Graph of sediment biogeochemical parameters sampled over small spatial scales and patch scales.

description: Graph of sediment biogeochemical parameters sampled over small spatial scales and patch scales.
DOI: 10.6084/m9.figshare.3560094.v1
title: Appendix B. Graph of sediment biogeochemical parameters sampled over small spatial scales and patch scales.

description: Graph of sediment biogeochemical parameters sampled over small spatial scales and patch scales.
DOI: 10.6084/m9.figshare.3560091
title: Appendix C. Photograph of rhizome-root structural mimics.

description: Photograph of rhizome-root structural mimics.
DOI: 10.6084/m9.figshare.3560091.v1
title: Appendix C. Photograph of rhizome-root structural mimics.

description: Photograph of rhizome-root structural mimics.
DOI: 10.6084/m9.figshare.3560088
title: Appendix D. Conceptual diagram of the randomized complete block design used in the eelgrass patch-edge disturbance experiment.

description: Conceptual diagram of the randomized complete block design used in the eelgrass patch-edge disturbance experiment.
DOI: 10.6084/m9.figshare.3560085
title: Appendix E. Table of independent-samples t test results for sediment parameters surveyed over patch scales.

description: Table of independent-samples t test results for sediment parameters surveyed over patch scales.
DOI: 10.6084/m9.figshare.3560085.v1
title: Appendix E. Table of independent-samples t test results for sediment parameters surveyed over patch scales.

description: Table of independent-samples t test results for sediment parameters surveyed over patch scales.
DOI: 10.6084/m9.figshare.3560082
title: Appendix F. ANOVA table for results from the eelgrass transplantation experiment.

description: ANOVA table for results from the eelgrass transplantation experiment.
DOI: 10.6084/m9.figshare.3560082.v1
title: Appendix F. ANOVA table for results from the eelgrass transplantation experiment.

description: ANOVA table for results from the eelgrass transplantation experiment.
DOI: 10.6084/m9.figshare.3560079
title: Appendix G. ANOVA table for results from the rhizome-root structural mimic experiment.

description: ANOVA table for results from the rhizome-root structural mimic experiment.
DOI: 10.6084/m9.figshare.3560079.v1
title: Appendix G. ANOVA table for results from the rhizome-root structural mimic experiment.

description: ANOVA table for results from the rhizome-root structural mimic experiment.
DOI: 10.6084/m9.figshare.3560076
title: Appendix H. ANOVA table for results from the eelgrass patch-interior disturbance experiment.

description: ANOVA table for results from the eelgrass patch-interior disturbance experiment.
DOI: 10.6084/m9.figshare.3560076.v1
title: Appendix H. ANOVA table for results from the eelgrass patch-interior disturbance experiment.

description: ANOVA table for results from the eelgrass patch-interior disturbance experiment.
DOI: 10.6084/m9.figshare.3560073
title: Appendix I. ANOVA table for results from the eelgrass patch-edge disturbance experiment.

description: ANOVA table for results from the eelgrass patch-edge disturbance experiment.
DOI: 10.6084/m9.figshare.3560073.v1
title: Appendix I. ANOVA table for results from the eelgrass patch-edge disturbance experiment.

description: ANOVA table for results from the eelgrass patch-edge disturbance experiment.
DOI: 10.6084/m9.figshare.3560067
title: Appendix A. Equilibria of the over-invasion model.

description: Equilibria of the over-invasion model.
DOI: 10.6084/m9.figshare.3560067.v1
title: Appendix A. Equilibria of the over-invasion model.

description: Equilibria of the over-invasion model.
DOI: 10.6084/m9.figshare.3560064
title: Appendix A. Table of definitions and input values for model parameters, table comparing model output and estimates from natural ecosystems, and figure of dreissenid model simulations.

description: Table of definitions and input values for model parameters, table comparing model output and estimates from natural ecosystems, and figure of dreissenid model simulations.
DOI: 10.6084/m9.figshare.3560061
title: Appendix A. Sensitivity analysis of mathematical model.

description: Sensitivity analysis of mathematical model.
DOI: 10.6084/m9.figshare.3560061.v1
title: Appendix A. Sensitivity analysis of mathematical model.

description: Sensitivity analysis of mathematical model.
DOI: 10.6084/m9.figshare.3560058
title: Appendix B. Temperature dependencies of the vital rates of Lepomis sunfish, Daphnia pulex, and Daphnia lumholtzi.

description: Temperature dependencies of the vital rates of Lepomis sunfish, Daphnia pulex, and Daphnia lumholtzi.
DOI: 10.6084/m9.figshare.3560058.v1
title: Appendix B. Temperature dependencies of the vital rates of Lepomis sunfish, Daphnia pulex, and Daphnia lumholtzi.

description: Temperature dependencies of the vital rates of Lepomis sunfish, Daphnia pulex, and Daphnia lumholtzi.
DOI: 10.6084/m9.figshare.3560055
title: Appendix C. Two-dimensional representations of the mathematical model.

description: Two-dimensional representations of the mathematical model.
DOI: 10.6084/m9.figshare.3560055.v1
title: Appendix C. Two-dimensional representations of the mathematical model.

description: Two-dimensional representations of the mathematical model.
DOI: 10.6084/m9.figshare.3560052
title: Appendix D. Chlorophyll dynamics during the mesocosm experiment.

description: Chlorophyll dynamics during the mesocosm experiment.
DOI: 10.6084/m9.figshare.3560052.v1
title: Appendix D. Chlorophyll dynamics during the mesocosm experiment.

description: Chlorophyll dynamics during the mesocosm experiment.
DOI: 10.6084/m9.figshare.3560049
title: Appendix A. Theory-predicted N-fixing tree abundance in different habitats.

description: Theory-predicted N-fixing tree abundance in different habitats.
DOI: 10.6084/m9.figshare.3560049.v1
title: Appendix A. Theory-predicted N-fixing tree abundance in different habitats.

description: Theory-predicted N-fixing tree abundance in different habitats.
DOI: 10.6084/m9.figshare.3560046
title: Appendix B. Additional evidence for differential regulation, stand-age distributions, inventory patterns with elevation, and sensitivity analyses.

description: Additional evidence for differential regulation, stand-age distributions, inventory patterns with elevation, and sensitivity analyses.
DOI: 10.6084/m9.figshare.3560046.v1
title: Appendix B. Additional evidence for differential regulation, stand-age distributions, inventory patterns with elevation, and sensitivity analyses.

description: Additional evidence for differential regulation, stand-age distributions, inventory patterns with elevation, and sensitivity analyses.
DOI: 10.6084/m9.figshare.3560040
title: Appendix A. Background data and additional results for the heuristic model and observations of root dynamics in the Rock Springs Common Garden.

description: Background data and additional results for the heuristic model and observations of root dynamics in the Rock Springs Common Garden.
DOI: 10.6084/m9.figshare.3560037
title: Appendix A. Allometric relationships for calculating pine seedling biomass.

description: Allometric relationships for calculating pine seedling biomass.
DOI: 10.6084/m9.figshare.3560034
title: Appendix B. Further details about the two statistical models.

description: Further details about the two statistical models.
DOI: 10.6084/m9.figshare.3560034.v1
title: Appendix B. Further details about the two statistical models.

description: Further details about the two statistical models.
DOI: 10.6084/m9.figshare.3560031
title: Appendix C. The effects of herbaceous species richness and seedling size class on seedling relative growth rate (RGR).

description: The effects of herbaceous species richness and seedling size class on seedling relative growth rate (RGR).
DOI: 10.6084/m9.figshare.3560031.v1
title: Appendix C. The effects of herbaceous species richness and seedling size class on seedling relative growth rate (RGR).

description: The effects of herbaceous species richness and seedling size class on seedling relative growth rate (RGR).
DOI: 10.6084/m9.figshare.3560028
title: Appendix D. The effects of species richness and size class on pine RGR at biweekly intervals.

description: The effects of species richness and size class on pine RGR at biweekly intervals.
DOI: 10.6084/m9.figshare.3560028.v1
title: Appendix D. The effects of species richness and size class on pine RGR at biweekly intervals.

description: The effects of species richness and size class on pine RGR at biweekly intervals.
DOI: 10.6084/m9.figshare.3560025
title: Appendix A. Supplementary photo of the study species and additional distribution information.

description: Supplementary photo of the study species and additional distribution information.
DOI: 10.6084/m9.figshare.3560025.v1
title: Appendix A. Supplementary photo of the study species and additional distribution information.

description: Supplementary photo of the study species and additional distribution information.
DOI: 10.6084/m9.figshare.3560019
title: Appendix B. Supplementary table with complete predictor variable correlation matrix and additional information on nuisance variables.

description: Supplementary table with complete predictor variable correlation matrix and additional information on nuisance variables.
DOI: 10.6084/m9.figshare.3560016
title: Appendix C. Supplementary information on the importance of focal patch design.

description: Supplementary information on the importance of focal patch design.
DOI: 10.6084/m9.figshare.3560013
title: Appendix D. Supplementary information containing detailed Heliconia tortuosa habitat model methods.

description: Supplementary information containing detailed Heliconia tortuosa habitat model methods.
DOI: 10.6084/m9.figshare.3560010
title: Appendix E. Supplementary table with preselection of nuisance and landscape composition models for pollination of H. tortuosa.

description: Supplementary table with preselection of nuisance and landscape composition models for pollination of H. tortuosa.
DOI: 10.6084/m9.figshare.3560010.v1
title: Appendix E. Supplementary table with preselection of nuisance and landscape composition models for pollination of H. tortuosa.

description: Supplementary table with preselection of nuisance and landscape composition models for pollination of H. tortuosa.
DOI: 10.6084/m9.figshare.3560007
title: Appendix F. Supplementary table showing model averaged estimates for response variables.

description: Supplementary table showing model averaged estimates for response variables.
DOI: 10.6084/m9.figshare.3560007.v1
title: Appendix F. Supplementary table showing model averaged estimates for response variables.

description: Supplementary table showing model averaged estimates for response variables.
DOI: 10.6084/m9.figshare.3560004
title: Appendix G. Supplementary information on testing for any effects of partially overlapping landscapes.

description: Supplementary information on testing for any effects of partially overlapping landscapes.
DOI: 10.6084/m9.figshare.3560001
title: Appendix H. Supplementary information on testing competing configuration, local-scale composition, and landscape-scale composition hypotheses.

description: Supplementary information on testing competing configuration, local-scale composition, and landscape-scale composition hypotheses.
DOI: 10.6084/m9.figshare.3559998
title: Appendix A. Additional site descriptions, two method tables, two data tables, and four additional figures.

description: Additional site descriptions, two method tables, two data tables, and four additional figures.
DOI: 10.6084/m9.figshare.3559998.v1
title: Appendix A. Additional site descriptions, two method tables, two data tables, and four additional figures.

description: Additional site descriptions, two method tables, two data tables, and four additional figures.
DOI: 10.6084/m9.figshare.3559995
title: Appendix A. Relationship between similarity statistics at two taxonomic levels.

description: Relationship between similarity statistics at two taxonomic levels.
DOI: 10.6084/m9.figshare.3559995.v1
title: Appendix A. Relationship between similarity statistics at two taxonomic levels.

description: Relationship between similarity statistics at two taxonomic levels.
DOI: 10.6084/m9.figshare.3559992
title: Appendix B. Habitat preferences within the regional pool of migrants.

description: Habitat preferences within the regional pool of migrants.
DOI: 10.6084/m9.figshare.3559992.v1
title: Appendix B. Habitat preferences within the regional pool of migrants.

description: Habitat preferences within the regional pool of migrants.
DOI: 10.6084/m9.figshare.3559989
title: Appendix C. Algorithm generating the species abundance distributions in local communities, with dispersal limitation and habitat filtering.

description: Algorithm generating the species abundance distributions in local communities, with dispersal limitation and habitat filtering.
DOI: 10.6084/m9.figshare.3559989.v1
title: Appendix C. Algorithm generating the species abundance distributions in local communities, with dispersal limitation and habitat filtering.

description: Algorithm generating the species abundance distributions in local communities, with dispersal limitation and habitat filtering.
DOI: 10.6084/m9.figshare.3559986
title: Appendix D. Comparison of the immigration numbers at several taxonomic resolutions when varying some of the simulation parameters.

description: Comparison of the immigration numbers at several taxonomic resolutions when varying some of the simulation parameters.
DOI: 10.6084/m9.figshare.3559986.v1
title: Appendix D. Comparison of the immigration numbers at several taxonomic resolutions when varying some of the simulation parameters.

description: Comparison of the immigration numbers at several taxonomic resolutions when varying some of the simulation parameters.
DOI: 10.6084/m9.figshare.3559983
title: Appendix A. List of liana species found in the 50-ha plot on Barro Colorado Island (BCI). The list specifies the number of stems (N), percentage of stems that are not clonal stems (% genets), and the Akaike information criteria (AIC) obtained in the Inhomogeneous Poisson process spatial modeling when included as spatial covariates: (a) X,Y corrdinates (Spatial); (b) habitat conditions (Habitat); (c) grade of disturbance (Disturb); and (d) grade and disturbance along with distance to...

description: List of liana species found in the 50-ha plot on Barro Colorado Island (BCI). The list specifies the number of stems (N), percentage of stems that are not clonal stems (% genets), and the Akaike information criteria (AIC) obtained in the Inhomogeneous Poisson process spatial modeling when included as spatial covariates: (a) X,Y corrdinates (Spatial); (b) habitat conditions (Habitat); (c) grade of disturbance (Disturb); and (d) grade and disturbance along with distance to conspecific adults (Dist+DD).
DOI: 10.6084/m9.figshare.3559983.v1
title: Appendix A. List of liana species found in the 50-ha plot on Barro Colorado Island (BCI). The list specifies the number of stems (N), percentage of stems that are not clonal stems (% genets), and the Akaike information criteria (AIC) obtained in the Inhomogeneous Poisson process spatial modeling when included as spatial covariates: (a) X,Y corrdinates (Spatial); (b) habitat conditions (Habitat); (c) grade of disturbance (Disturb); and (d) grade and disturbance along with distance to...

description: List of liana species found in the 50-ha plot on Barro Colorado Island (BCI). The list specifies the number of stems (N), percentage of stems that are not clonal stems (% genets), and the Akaike information criteria (AIC) obtained in the Inhomogeneous Poisson process spatial modeling when included as spatial covariates: (a) X,Y corrdinates (Spatial); (b) habitat conditions (Habitat); (c) grade of disturbance (Disturb); and (d) grade and disturbance along with distance to conspecific adults (Dist+DD).
DOI: 10.6084/m9.figshare.3559980
title: Appendix A. Example of BUGS code.

description: Example of BUGS code.
DOI: 10.6084/m9.figshare.3559980.v1
title: Appendix A. Example of BUGS code.

description: Example of BUGS code.
DOI: 10.6084/m9.figshare.3559977
title: Appendix B. Listing of study species and natural history categories.

description: Listing of study species and natural history categories.
DOI: 10.6084/m9.figshare.3559977.v1
title: Appendix B. Listing of study species and natural history categories.

description: Listing of study species and natural history categories.