cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1594/pangaea.976329
title: Core close-up images of IODP Hole 386-M0081F

description: Collection of split cores' close-up images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. Close-up photos were taken utilizing a standard photo camera by sedimentologists during visual core description. Decision on imaged intervals was subject to the core describers in charge. The standard IODP convention for labelling follows the syntax expedition number – hole – core plus core type ("H" [for hydraulic piston corer] indicates GPC cores, and "P" [for push corer] indicates trigger corer cores, see core summaries for further information) – section, top of interval in section [in cm] – bottom of interval in section [in cm], for instance "386-M0081A-1P-1,10-30" identifies a photo taken from the interval 10-30 cm within section 1 of core 1P from hole M0081A of expedition 386.For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976330
title: Core close-up images of IODP Hole 386-M0082A

description: Collection of split cores' close-up images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. Close-up photos were taken utilizing a standard photo camera by sedimentologists during visual core description. Decision on imaged intervals was subject to the core describers in charge. The standard IODP convention for labelling follows the syntax expedition number – hole – core plus core type ("H" [for hydraulic piston corer] indicates GPC cores, and "P" [for push corer] indicates trigger corer cores, see core summaries for further information) – section, top of interval in section [in cm] – bottom of interval in section [in cm], for instance "386-M0081A-1P-1,10-30" identifies a photo taken from the interval 10-30 cm within section 1 of core 1P from hole M0081A of expedition 386.For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.6084/m9.figshare.29143346
title: On diagnostic accuracy measures and optimal cut-point selection measures for multi-stage diseases via generalized total Kullback–Leibler divergence

description: The accuracy of a diagnostic test has always been crucial for detecting disease staging. Numerous diagnostic precision tests have been extensively used in binary diagnosis. Some existing measures apply to multi-stage diagnosis. However, implementation has limitations, and performance strongly depends on the distribution of diagnostic results. Considering the rule-in/out information provided by the Kullback-Leibler divergence, we propose a new measure that generalizes the total Kullback-Leibler (GTKL) divergence as an accuracy measure in the multi-stage diagnosis. We further examine the fact that the generalized measure can serve as an optimal cut-point selection criterion when the number of stages increases. Moreover, we conduct a series of simulation studies to compare existing measures’ power and optimal cut-point selection and performance, including the generalized Youden index, maximum absolute determinant, closest-to-perfection, and maximum volume. Furthermore, we illustrate the application of our measures and the comparison with other measures using an example of Alzheimer’s disease data. The results show GTKL’s outstanding performance in some situations. A detailed performance analysis of existing metrics is also presented throughout the document.
DOI: 10.6084/m9.figshare.29143346.v1
title: On diagnostic accuracy measures and optimal cut-point selection measures for multi-stage diseases via generalized total Kullback–Leibler divergence

description: The accuracy of a diagnostic test has always been crucial for detecting disease staging. Numerous diagnostic precision tests have been extensively used in binary diagnosis. Some existing measures apply to multi-stage diagnosis. However, implementation has limitations, and performance strongly depends on the distribution of diagnostic results. Considering the rule-in/out information provided by the Kullback-Leibler divergence, we propose a new measure that generalizes the total Kullback-Leibler (GTKL) divergence as an accuracy measure in the multi-stage diagnosis. We further examine the fact that the generalized measure can serve as an optimal cut-point selection criterion when the number of stages increases. Moreover, we conduct a series of simulation studies to compare existing measures’ power and optimal cut-point selection and performance, including the generalized Youden index, maximum absolute determinant, closest-to-perfection, and maximum volume. Furthermore, we illustrate the application of our measures and the comparison with other measures using an example of Alzheimer’s disease data. The results show GTKL’s outstanding performance in some situations. A detailed performance analysis of existing metrics is also presented throughout the document.
DOI: 10.1594/pangaea.976331
title: Core close-up images of IODP Hole 386-M0082B

description: Collection of split cores' close-up images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. Close-up photos were taken utilizing a standard photo camera by sedimentologists during visual core description. Decision on imaged intervals was subject to the core describers in charge. The standard IODP convention for labelling follows the syntax expedition number – hole – core plus core type ("H" [for hydraulic piston corer] indicates GPC cores, and "P" [for push corer] indicates trigger corer cores, see core summaries for further information) – section, top of interval in section [in cm] – bottom of interval in section [in cm], for instance "386-M0081A-1P-1,10-30" identifies a photo taken from the interval 10-30 cm within section 1 of core 1P from hole M0081A of expedition 386.For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.6084/m9.figshare.29072952
title: Simultaneous aligned rank transform tests in analysis of covariance based on pairwise ranking

description: There are two approaches to non-parametric pairwise comparisons of treatment effects: the method based on pairwise rankings and the method based on overall ranking. The former is generally recommended in the literature because of its strong control of the familywise error rate. However, this method is only available for data involving one-way layouts and randomized complete blocks. Here, the Steel-Dwass pairwise comparisons method is extended to the classical analysis of covariance model and factorial models for one-(and two)-sided comparisons as well as testing for treatment versus control. In addition to the two-sample standardization of test statistics, a weighted estimate of the scale parameter based on the rank scores is proposed and shown to have superior small sample performance while controlling the familywise error rate. The marginal and joint asymptotic distributions are derived, and power comparisons are made with the method of aligned overall rank transformation and the least squares method.
DOI: 10.6084/m9.figshare.29072952.v1
title: Simultaneous aligned rank transform tests in analysis of covariance based on pairwise ranking

description: There are two approaches to non-parametric pairwise comparisons of treatment effects: the method based on pairwise rankings and the method based on overall ranking. The former is generally recommended in the literature because of its strong control of the familywise error rate. However, this method is only available for data involving one-way layouts and randomized complete blocks. Here, the Steel-Dwass pairwise comparisons method is extended to the classical analysis of covariance model and factorial models for one-(and two)-sided comparisons as well as testing for treatment versus control. In addition to the two-sample standardization of test statistics, a weighted estimate of the scale parameter based on the rank scores is proposed and shown to have superior small sample performance while controlling the familywise error rate. The marginal and joint asymptotic distributions are derived, and power comparisons are made with the method of aligned overall rank transformation and the least squares method.
DOI: 10.1594/pangaea.976332
title: Core close-up images of IODP Hole 386-M0082C

description: Collection of split cores' close-up images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. Close-up photos were taken utilizing a standard photo camera by sedimentologists during visual core description. Decision on imaged intervals was subject to the core describers in charge. The standard IODP convention for labelling follows the syntax expedition number – hole – core plus core type ("H" [for hydraulic piston corer] indicates GPC cores, and "P" [for push corer] indicates trigger corer cores, see core summaries for further information) – section, top of interval in section [in cm] – bottom of interval in section [in cm], for instance "386-M0081A-1P-1,10-30" identifies a photo taken from the interval 10-30 cm within section 1 of core 1P from hole M0081A of expedition 386.For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976610
title: Visual core description of IODP Hole 386-M0084A

description: Collection of visual core description (VCD) sheets (hand drawn originals and digital representations) and lithologic composite plots from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). VCD was performed on unsampled archive halves of split cores, directly after linescan imaging, during the onshore phase of expedition 386, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. The lithology of each core section is represented on the hand drawn VCDs by graphic patterns next to the X-ray CT image of the archive-half core section. Further, a wide variety of features that characterize the sediment are indicated in additional columns. The information from the hand-drawn VCD sheets was then transferred into the Drilling Information System database (s. also datasets "Description of lithologic section units of IODP Hole 386-M0084A"), from where it could be accessed semi-automated to produce digital lithologic columns and composite plots using Strater (Golden Software).For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976611
title: Visual core description of IODP Hole 386-M0084B

description: Collection of visual core description (VCD) sheets (hand drawn originals and digital representations) and lithologic composite plots from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). VCD was performed on unsampled archive halves of split cores, directly after linescan imaging, during the onshore phase of expedition 386, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. The lithology of each core section is represented on the hand drawn VCDs by graphic patterns next to the X-ray CT image of the archive-half core section. Further, a wide variety of features that characterize the sediment are indicated in additional columns. The information from the hand-drawn VCD sheets was then transferred into the Drilling Information System database (s. also datasets "Description of lithologic section units of IODP Hole 386-M0084B"), from where it could be accessed semi-automated to produce digital lithologic columns and composite plots using Strater (Golden Software).For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976612
title: Visual core description of IODP Hole 386-M0084C

description: Collection of visual core description (VCD) sheets (hand drawn originals and digital representations) and lithologic composite plots from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). VCD was performed on unsampled archive halves of split cores, directly after linescan imaging, during the onshore phase of expedition 386, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. The lithology of each core section is represented on the hand drawn VCDs by graphic patterns next to the X-ray CT image of the archive-half core section. Further, a wide variety of features that characterize the sediment are indicated in additional columns. The information from the hand-drawn VCD sheets was then transferred into the Drilling Information System database (s. also datasets "Description of lithologic section units of IODP Hole 386-M0084C"), from where it could be accessed semi-automated to produce digital lithologic columns and composite plots using Strater (Golden Software).For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976171
title: Line scan images of IODP Hole 386-M0082D

description: Collection of line scan images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. After longitudinal splitting high-resolution (100 pixels/cm) images of each core sections archive half was captured using the Tri-Sensor Core Logger (TSCL; NS Design). The camera provides a 16-bit red-green-blue color (48-bit) TIFF file, which were converted to JPG files for publication purposes. The RGB data derived from each image for each section are published under titles "Color data (RGB) of IODP Hole 386-M0082D".For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976172
title: Line scan images of IODP Hole 386-M0083A

description: Collection of line scan images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. After longitudinal splitting high-resolution (100 pixels/cm) images of each core sections archive half was captured using the Tri-Sensor Core Logger (TSCL; NS Design). The camera provides a 16-bit red-green-blue color (48-bit) TIFF file, which were converted to JPG files for publication purposes. The RGB data derived from each image for each section are published under titles "Color data (RGB) of IODP Hole 386-M0083A".For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976173
title: Line scan images of IODP Hole 386-M0083B

description: Collection of line scan images from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). The offshore phase of this expedition took place between 2021-04-13 and 2021-06-01 onboard Japanese R/V Kaimei from and to Yokosuka, Japan. Images were obtained during the onshore phase of the expedition, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. After longitudinal splitting high-resolution (100 pixels/cm) images of each core sections archive half was captured using the Tri-Sensor Core Logger (TSCL; NS Design). The camera provides a 16-bit red-green-blue color (48-bit) TIFF file, which were converted to JPG files for publication purposes. The RGB data derived from each image for each section are published under titles "Color data (RGB) of IODP Hole 386-M0083B".For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976598
title: Visual core description of IODP Hole 386-M0081E

description: Collection of visual core description (VCD) sheets (hand drawn originals and digital representations) and lithologic composite plots from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). VCD was performed on unsampled archive halves of split cores, directly after linescan imaging, during the onshore phase of expedition 386, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. The lithology of each core section is represented on the hand drawn VCDs by graphic patterns next to the X-ray CT image of the archive-half core section. Further, a wide variety of features that characterize the sediment are indicated in additional columns. The information from the hand-drawn VCD sheets was then transferred into the Drilling Information System database (s. also datasets "Description of lithologic section units of IODP Hole 386-M0081E"), from where it could be accessed semi-automated to produce digital lithologic columns and composite plots using Strater (Golden Software).For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).
DOI: 10.1594/pangaea.976592
title: Visual core description of IODP Hole 386-M0081A

description: Collection of visual core description (VCD) sheets (hand drawn originals and digital representations) and lithologic composite plots from the above given hole of International Ocean Discovery Program (IODP) Expedition 386 (Japan Trench Paleoseismology). VCD was performed on unsampled archive halves of split cores, directly after linescan imaging, during the onshore phase of expedition 386, which took place between 2022-02-14 – 2022-03-15 onboard D/V Chikyu. The lithology of each core section is represented on the hand drawn VCDs by graphic patterns next to the X-ray CT image of the archive-half core section. Further, a wide variety of features that characterize the sediment are indicated in additional columns. The information from the hand-drawn VCD sheets was then transferred into the Drilling Information System database (s. also datasets "Description of lithologic section units of IODP Hole 386-M0081A"), from where it could be accessed semi-automated to produce digital lithologic columns and composite plots using Strater (Golden Software).For further methodological information see methods chapter in Strasser, M. et al., 2023 https://doi.org/10.14379/iodp.proc.386.102.2023
description: Data was submitted and proofread by Vera Barbara Bender, MARUM - Center for Marine Environmental Sciences (University Bremen) on behalf of ECORD Science Operator Data Management (https://www.ecord.org).