cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8067572.v1
title: Supplementary Material for: Prediction Model of Cardiac Risk for Dental Extraction in Elderly Patients with Cardiovascular Diseases

description: <b><i>Background:</i></b> With the rapidly increasing population of elderly people, dental extraction in elderly individuals with cardiovascular diseases (CVDs) has become quite common. The issue of how to assure the safety of elderly patients with CVDs undergoing dental extraction has perplexed dentists and internists for many years. And it is important to derive an appropriate risk prediction tool for this population. <b><i>Objectives:</i></b> The aim of this retrospective, observational study was to establish and validate a prediction model based on the random forest (RF) algorithm for the risk of cardiac complications of dental extraction in elderly patients with CVDs. <b><i>Methods:</i></b> Between August 2017 and May 2018, a total of 603 patients who fulfilled the inclusion criteria were used to create a training set. An independent test set contained 230 patients between June 2018 and July 2018. Data regarding clinical parameters, laboratory tests, clinical examinations before dental extraction, and 1-week follow-up were retrieved. Predictors were identified by using logistic regression (LR) with penalized LASSO (least absolute shrinkage and selection operator) variable selection. Then, a prediction model was constructed based on the RF algorithm by using a 5-fold cross-validation method. <b><i>Results:</i></b> The training set, based on 603 participants, including 282 men and 321 women, had an average participant age of 72.38 ± 8.31 years. Using feature selection methods, 11 predictors for risk of cardiac complications were screened out. When the RF model was constructed, its overall classification accuracy was 0.82 at the optimal cutoff value of 18.5%. In comparison to the LR model, the RF model showed a superior predictive performance. The AUROC (area under the receiver operating characteristic curve) scores of the RF and LR models were 0.83 and 0.80, respectively, in the independent test set. The AUPRC (area under the precision-recall curve) scores of the RF and LR models were 0.56 and 0.35, respectively, in the independent test set. <b><i>Conclusion:</i></b> The RF-based prediction model is expected to be applicable for preoperative clinical assessment for preventing cardiac complications in elderly patients with CVDs undergoing dental extraction. The findings may aid physicians and dentists in making more informed recommendations to prevent cardiac complications in this patient population.
DOI: 10.6084/m9.figshare.23834667.v1
title: Supplementary Material for: Granulocytic Sarcoma mimicking Cholesteatoma: beware the temporal bone in hematological patients

description: Granulocytic sarcoma is a myeloid neoplasm that can occur in isolation or in association with acute leukaemia. The temporal bone represents a sanctuary site for myeloid progenitors: granulocytic sarcoma may develop in this location before or concomitant with the onset of acute leukaemia. This atypical presentation with clinical and radiological data that closely mimic those of cholesteatoma often delay an accurate diagnosis. We here present the clinical case of a 28-year-old male with granulocytic sarcoma of the external auditory canal that preceded the relapse of promyelocytic leukaemia.
DOI: 10.6084/m9.figshare.21345660.v8
title: Dataset on Hydropower Reservoirs and FPV potential data in EU27 from the publication: Benefits of Pairing Floating Solar Photovoltaic with Hydropower Reservoirs in Europe (National and Regional Level).

description: Detailed geoloacted data used to estimate the Floating Photovoltaic energy output if FPV systems would be installed in operational hydropower reservoirs in EU27. The reduction of evaporation in specific reservoirs selected for four different scenarios of area coverage. For each scenario we evaluated electricity production, water savings for two alterate floating structures. <br> <strong>Benefits of Pairing Floating Solar Photovoltaic with Hydropower Reservoirs in Europe (National and Regional Level</strong>). Available at: https://doi.org/10.1016/j.rser.2022.112989 Written by Kakoulaki, Georgia and Gonzalez-Sanchez, Rocio and Gracia Amillo, Ana and Szabó, Sándor and De Felice, Matteo and Farinosi, Fabio and De Felice, Luca and Bisselink, Berny and Seliger, Roman and Kougias, Ioannis and Jäger-Waldau, Arnulf,
DOI: 10.6084/m9.figshare.16658437.v1
title: Supplementary Material for: Enhancing Cognitive Restructuring with Concurrent Repetitive Transcranial Magnetic Stimulation: A Transdiagnostic Randomized Controlled Trial

description: <b><i>Introduction:</i></b> Emotional dysregulation constitutes a serious public health problem in need of novel transdiagnostic treatments. <b><i>Objective:</i></b> To this aim, we developed and tested a one-time intervention that integrates behavioral skills training with concurrent repetitive transcranial magnetic stimulation (rTMS). <b><i>Methods:</i></b> Forty-six adults who met criteria for at least one DSM-5 disorder and self-reported low use of cognitive restructuring (CR) were enrolled in a randomized, double-blind, sham-controlled trial that used a between-subjects design. Participants were taught CR and underwent active rTMS applied at 10 Hz over the right (<i>n</i> = 17) or left (<i>n</i> = 14) dorsolateral prefrontal cortex (dlPFC) or sham rTMS (<i>n</i> = 15) while practicing reframing and emotional distancing in response to autobiographical stressors. <b><i>Results:</i></b> Those who received active left or active right as opposed to sham rTMS exhibited enhanced regulation (<i>d</i>s = 0.21–0.62) as measured by psychophysiological indices during the intervention (higher high-frequency heart rate variability, lower regulation duration). Those who received active rTMS over the left dlPFC also self-reported reduced distress throughout the intervention (<i>d</i> = 0.30), higher likelihood to use CR, and lower daily distress during the week following the intervention. The procedures were acceptable and feasible with few side effects. <b><i>Conclusions:</i></b> These findings show that engaging frontal circuits simultaneously with cognitive skills training and rTMS may be clinically feasible, well-tolerated and may show promise for the treatment of transdiagnostic emotional dysregulation. Larger follow-up studies are needed to confirm the efficacy of this novel therapeutic approach.
DOI: 10.6084/m9.figshare.12546686.v1
title: Peritoneal_Splenic Macrophages_data

description: Peritoneal and splenic red pulp macrophages displayed major differences in cell surface phenotype reflecting their adaptation to different tissue microenvironments and tissue-specific functions.
DOI: 10.6084/m9.figshare.12674381.v1
title: Kaggle_NLP_Notebooks.zip

description: Manually annotated all notebooks
DOI: 10.6084/m9.figshare.28006601.v2
title: Pharmacogenetic and pharmacokinetic factors for dexmedetomidine-associated hemodynamic instability in pediatric patients

description: The reported incidence of hemodynamic instability for dexmedetomidine (DEX) sedation exceeds 50%. The risk of hemodynamic instability caused by DEX necessitates a better understanding of its pharmacogenetics in young children. The purpose of this study was to investigate the factors that associated with DEX-induced hemodynamic instability. As a result, genetic variants in UGT2B10, CYP2A6, ADRA2B, CACNA2D2, NR1I2 and CACNB2 influenced the incidence of DEX-induced hemodynamic instability, and polymorphism analyses in associated genes might be beneficial to optimize DEX treatment. Hemodynamic instability is likely to occur after 35-min DEX initiation in patients with lower DEX clearance after propofol induction.<br>
DOI: 10.6084/m9.figshare.13297688.v1
title: SLD

description: SLD_GQI
DOI: 10.6084/m9.figshare.7976144.v1
title: Daily Romanian stock prices between 1997 and 2019

description: The data set refers 25 companies listed under the Romanian stock market, as collected daily from the Bucharest Stock Exchange http://www.bvb.ro/ over time. The trading indicators are the number and value of transactions, the number of shares, the minimum, average and maximum prices, the open and close price, and the reference price. <br>The data has been collected since October 16 1997 until March 13 2019. The number of records for each business is different, as triggered by the date of the creation and the enlisting of the company.
DOI: 10.6084/m9.figshare.7680233.v1
title: Supplementary Material for: Fetoscopic Release of Amniotic Bands Causing Limb Constriction: Case Series and Review of the Literature

description: The aim of this study was to review the perioperative complication rates and neonatal outcomes after fetoscopic release of amniotic bands that caused bilateral limb constrictions. We present 5 cases of limb constriction by amniotic bands occurring spontaneously or following fetoscopic surgery and also include a review of 21 previously published cases. The cases were analyzed for indication, surgical technique, and postoperative follow-up. In our population and the literature, the majority of the children acquired a functional limb (75%), with few perioperative complications (15%). Fetal morbidity was mainly linked to the consequences of preterm premature rupture of the membranes (38.4%) and preterm birth (34.7 GW). The mortality rate was low (7.7%). This review only describes amniotic bands causing limb constriction, and illustrates that fetoscopic surgery for their release is technically feasible with an acceptable perioperative complication rate. However, the 75% success rate is very likely to be an overestimation of the true success rate. In view of these observations we cannot recommend treatment for cases where the fetus has been extensively affected by the bands. We believe, however, that we could consider this technique for a fraction of amniotic band syndrome cases isolated to the limb constrictions. This kind of surgery should be proposed as a potential treatment for amniotic band syndrome.
DOI: 10.6084/m9.figshare.1476988.v1
title: Input tracts (subject #01)

description: Fiber tracts data used in the below paper: An example-based multi-atlas approach to automatic labeling of white matter tracts (PLOS One 2015) - This file is for fiber tracts of subject #01 <strong>DOIs of other data:</strong> <br>- Input tracts s2: http://dx.doi.org/10.6084/m9.figshare.1476989 s3: http://dx.doi.org/10.6084/m9.figshare.1476987 s4: http://dx.doi.org/10.6084/m9.figshare.1476991 s5: http://dx.doi.org/10.6084/m9.figshare.1476992 s6: http://dx.doi.org/10.6084/m9.figshare.1476993 s7: http://dx.doi.org/10.6084/m9.figshare.1477902 s8: http://dx.doi.org/10.6084/m9.figshare.1477900 s9: http://dx.doi.org/10.6084/m9.figshare.1477901 s10: http://dx.doi.org/10.6084/m9.figshare.1477903 s11: http://dx.doi.org/10.6084/m9.figshare.1477904 s12: http://dx.doi.org/10.6084/m9.figshare.1477905 <strong></strong> <br>- Manually labeled tracts LH: http://dx.doi.org/10.6084/m9.figshare.1476981 RH: http://dx.doi.org/10.6084/m9.figshare.1476982 - Automatically labeled tracts LH: http://dx.doi.org/10.6084/m9.figshare.1476983 RH-1: http://dx.doi.org/10.6084/m9.figshare.1476984 RH-2: http://dx.doi.org/10.6084/m9.figshare.1476985
DOI: 10.6084/m9.figshare.24259669.v1
title: Supplementary data

description: Extended surfaces are commonly used to improve heat transfer in shell and tube heat exchangers, increasing manufacturing complicacy and material cost, especially for smaller units. These issues are attempted in the present study through dimensional variations of the tube. Seven model configurations are selected including common straight tubes and each is divided into three zones based on diameter. Both water temperatures and flow directions are also varied for each configuration resulting in 168 combinations. Hot water (30-100℃) flows through the tube and cold air at room temperature flows over the tube. It was observed that heat exchange is much higher compared to straight flow tubes when the hot fluid flows through a narrow neck located at the mid-zone. Comparatively, heat transfer increased by 14.41%, 26.34% and 40.34% during laminar, transition and turbulent conditions respectively. Heat gain by air is much higher during transition flow through tube, regardless of configuration.
DOI: 10.6084/m9.figshare.25416598.v1
title: Environmental filtering, not dispersal history, explains global patterns of phylogenetic turnover in seed plants at deep evolutionary timescales

description: Data and codes from Cai et al., 2024
DOI: 10.6084/m9.figshare.5004956.v1
title: Corrupting Cooperation and How Anti-Corruption Strategies May Backfire Data

description: Dataset accompanying Muthukrishna, Francois, Pourahmadi & Henrich (2017) Corrupting Cooperation and How Anti-Corruption Strategies May Backfire. <i>Nature Human Behaviour.</i>
DOI: 10.6084/m9.figshare.11336507.v2
title: Metadata record for: Global karst springs hydrograph dataset for research and management of the world’s fastest-flowing groundwater

description: This dataset contains key characteristics about the data described in the Data Descriptor Global karst springs hydrograph dataset for research and management of the world’s fastest-flowing groundwater. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format<br><br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.6502973.v1
title: Neupsilin-Inf in a Model of Brief Neuropsychological Assesment for Health Centers

description: Abstract This study aimed to analyze the use of NEUPSILIN-Inf in a model of brief neuropsychological assessment for children attending a helthcare service. The steps followed in the brief neuropsychological assessment model are waiting room, children’s group, and individual assessment. The analysis of this model’s efficacy in detecting cognitive deficits through NEUPSILIN-Inf was conducted by comparing the performance of 171 children with possible developmental disorders to 358 children from the normative sample of NEUPSILIN-Inf. The clinical group showed lower performance in all NEUPSILIN-Inf’s tasks. The set of data derived from the evaluation model can underlie diagnostic hypotheses, such as intellectual disabilities, learning disorders or specific language impairment. Taking into account the restrictive public care for children with possible developmental disorders, this model can be considered a cost-effective possibility to be accomplished by health centers in different Brazilian regions.
DOI: 10.6084/m9.figshare.15078573.v1
title: Elixir Vulnerability Dataset

description: Elixir dataset of vulnerabilities
DOI: 10.6084/m9.figshare.24025491.v1
title: Korean News Corpus for Changes in Child Abuse before and after COVID-19 Outbreak

description: During the COVID-19 pandemic, the issue of child abuse surged to the forefront of societal concerns in Korea. The public became increasingly attentive to child welfare issues, and every major Korean newspaper covered instances of child abuse, delving into the details of each case and the backgrounds of both victims and perpetrators. To trace the origin of this heightened awareness, we analyzed Korean news articles from the period before and after the pandemic's onset. We sourced articles from July 2017 to June 2022 (spanning two and a half years before and after the outbreak) using six search terms: "child abuse," "child neglect," "corporal punishment," "emotional abuse," "physical abuse," and "sexual abuse" on Naver News, a leading Korean news portal. Our methodology involved Part-Of-Speech (POS) tagging and stop-word removal to assess keyword frequency. Our objective was to determine if the COVID-19 pandemic was a direct catalyst for the uptick in child abuse reports or if the issue had been previously underreported. Additionally, we built dynamic semantic networks from the articles to chart monthly shifts in the narratives around child abuse in Korea and the society's evolving response to it. The gathered news data was archived in Pickle files, categorized by various dictionary keys such as publication date and time, publisher, title, URL, and article content.
DOI: 10.6084/m9.figshare.5126443.v1
title: Supplementary Material for: Medical Genetic Counseling for Breast Cancer in Primary Care: A Synthesis of Major Determinants of Physicians' Practices in Primary Care Settings

description: <b><i>Objectives:</i></b> This paper aims to identify relevant potential predictors of medical genetic counseling for breast cancer (MGC-BC) in primary care and to develop a comprehensive questionnaire to study MGC-BC. <b><i>Methods:</i></b> A scoping review was conducted to identify the predictors of MGC-BC among primary care physicians. Relevant articles were identified in selected databases (PubMed, Embase, CINAHL, ISI Web of Science, PsycINFO, and Cochrane CENTRAL) and 4 selected relevant electronic journals. <b><i>Results:</i></b> An inductive analysis of the 193 quantitatively tested variables, conducted by 3 researchers, showed that 6 conceptual categories of determinants, namely (1) demographic, (2) organizational, (3) experiential, (4) professional, (5) psychological, and (6) cognitive, influence MGC-BC practices. <b><i>Conclusion:</i></b> There is a scarcity of literature addressing the medical behavior determinants of MGC-BC. Future research is needed to identify effective strategies put into action to support the integration of MGC-BC in primary care medical practices and routines. However, our results shed light on 2 levels of actions that could improve genetic counseling services in primary care: (1) medical training and educational efforts emphasizing family history collection (individual level), and (2) clarification of roles and responsibilities in ordering and referral practices in genetic counseling and genetic testing for better healthcare management (organizational level).
DOI: 10.6084/m9.figshare.21779864.v1
title: Dataset for drug users servey in the Philippines

description: This is a data set collected in the Phippines to study the relationship between demographic profiles, other psychological variables and relapse risk.
DOI: 10.6084/m9.figshare.3568449.v1
title: Appendix B. Solving a linear system in order to predict mass loss from a decomposition network.

description: Solving a linear system in order to predict mass loss from a decomposition network.
DOI: 10.6084/m9.figshare.26361796.v1
title: Supplementary Material for: Diagnostic accuracy and safety of nonsurgical biopsy for diagnosing pulmonary ground-glass opacities: a systematic review and meta-analysis

description: Introduction
Previous meta-analyses have explored the diagnostic accuracy and safety of computed tomography-guided percutaneous lung biopsy of ground-glass opacities (GGOs). However, no research has investigated the role of nonsurgical biopsies (including transbronchial approaches). Additionally, studies reporting the diagnostic accuracy of GGOs with different characteristics are scarce, with no quantitative assessment published to date. We performed a systematic review to explore the diagnostic accuracy and safety of nonsurgical biopsy for diagnosing GGOs, especially those with higher ground-glass component and smaller nodule sizes.
Methods
A thorough literature search of four databases was performed to compile studies evaluating both or either of the diagnostic accuracy and complications of nonsurgical biopsy for GGOs. A bivariate random-effects model and random-effect model were utilized for data synthesis. The methodological quality of the studies was assessed according to the Quality Assessment of Diagnostic Accuracy Studies-2 tool.
Results
Nineteen eligible studies with a total of 1,379 biopsy-sampled lesions were analyzed, of which 1,124 were confirmed to be malignant. Nonsurgical biopsy reported a pooled sensitivity of 0.89, a specificity of 0.99, and negative predictive value (NPV) of 60.3%. The overall sensitivity, specificity, and NPV of nonsurgical biopsy for diagnosing GGOs according to GGO component were 0.90, 0.99, and 77.2% in pure GGOs; 0.87, 0.99, and 67.2% in GG-predominant lesions; and 0.89, 1.00 and 44.1% in solid-predominant lesions, respectively. Additionally, the diagnostic sensitivity was better in lesions ≥ 20 mm than in small lesions (0.95 vs 0.88). Factors that contributed to higher sensitivity were the use of coaxial needle system and CT fluoroscopy, but not the needle gauge. The summary sensitivity of core needle biopsy (CNB) was not significantly higher than fine needle aspiration (FNA) (0.92 vs 0.84; P = 0.42); however, we found an increased incidence of hemorrhage in CNB compared with FNA (60.9% vs 14.2%; P = 0.012). 
Conclusion
Nonsurgical biopsy for diagnosing GGOs shows high sensitivity and specificity with an acceptably low risk of complications. However, negative biopsy results are unreliable in excluding malignancy, necessitating resampling or subsequent follow-up. The applicability of our study is limited due to significant heterogeneity, indirect comparisons, and the paucity of data on bronchoscopic approaches, restricting the generalizability of our findings to patients requiring transbronchial biopsies. 
Trial Registry: PROSPERO; No.: CRD42023429977; URL: www.crd.york.ac.uk/PROSPERO/).
DOI: 10.6084/m9.figshare.28708679.v1
title: Frequency L Vs R Graphs (Control)

description: Plots for Control L Vs R Comparison
DOI: 10.6084/m9.figshare.6875522.v3
title: Raw 16S rRNA fastq data files for herbivore microbiome study

description: This repository contains the <b>RAW</b> sequencing data for the herbivorous reef fish microbiome study. Trimmed reads (with primers removed) were deposited at the European Nucleotide Archive, study accession number <b>PRJEB28397 (ERP110594)</b>.<br><br>Raw fastq data files are named using the root format RunQ_GnSpe000_G, where Q is the run number (1, 2, or 3), GnSpe is the host genus and species, 00 is a unique host ID number, and G is the gut segment (F = foregut; M = midgut; H = hind). So the file name Run1_SpVir11_M_S147_L001_R2_001.fastq corresponds to: the R2 reads; midgut sample; Sparisoma viride; individual 11; Run01.<br> <b>Raw fastq files are deposited here by Run.</b><b><br> </b>To process please use the scripts in the <b>Pipeline for 16S rRNA processing using DADA2 </b>directory.<br><b>DNA Extraction & Sequencing Methods</b><br>For all samples, we homogenized material from each gut segment (fore, mid, hind) separately in 50mL conical tubes for 2 minutes on a Vortex Genie 2. We collected 200 mg (wet weight) of homogenate for DNA extraction following the Human Microbiome Project Core Microbiome Sampling Protocol A (v12.0, HMP Protocol # 07-001) for stool samples. Prior to extraction, we heat treated each sample, first at 65℃ f or 10 minutes, followed by 95℃ for 10 minutes. We then used the PowerSoil® DNA Isolation Kit (MoBio) following the manufacturer's protocol to extract community DNA from each sample.<br> Extracted DNA was sequenced on an Illumina MiSeq by Integrated Microbiome Resource at the Centre for Comparative Genomics and Evolutionary Bioinformatics (Dalhousie University).<br> We targeted the V4-V5 hypervariable region using 515F (5′-GTGYCAGCMGCCGCGGTA) and 926R (5′-CCGYCAATTYMTTTRAGT). We collected 53 individual fish encompassing seven species and three genera. Two species—Sparisoma chrysopterum and Scarus vetula—were only represented by 1 and 2 individuals, respectively. Though we chose to omit these samples from the final analysis, these samples were sequenced and analyzed along with the rest of the samples and made the data available for analysis.<br>We generate sequence data for all 159 sample—three gut segments (fore, mid, and hind) from 53 individuals. Sequencing was conducted across three runs. In the first run (Run01), 144 samples were sequenced and, due to lower than average yield, were re-sequenced (Run02). The remaining 15 samples (5 individuals) were sequenced on a separate run (Run03).<br>