cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/00004616
title: A Placebo-Controlled, Double-Blinded, Randomized Clinical Trial of Anti-TNF Chimeric Monoclonal Antibody (cA2) in Korean Patients With Active Rheumatoid Arthritis Despite Methotrexate

description: Prior to the first infusion, patients will be randomized into one of two groups (placebo or infliximab). All patients will continue to receive the same does of methotrexate (MTX) during the study as received prior to the study. The objective of the study is to evaluate the efficacy and safety result of infliximab with Korean patients in reducing clinical signs and symptoms of rheumatoid arthritis (RA) at 30 weeks following the onset of treatment and to review whether the result is comparable to the result of the ATTRACT trial.
DOI: 10.6073/pasta/54d4bd2fee1e52e36e2b0f230912d2da
title: Time-series of high-frequency profiles of fluorescence-based phytoplankton spectral groups in Beaverdam Reservoir, Carvins Cove Reservoir, Falling Creek Reservoir, Gatewood Reservoir, and Spring Hollow Reservoir in southwestern Virginia, USA 2014-2020

description: Depth profiles of fluorescence-based phytoplankton biomass were sampled using a bbe Moldaenke FluoroProbe from 2014 to 2020 in five drinking water reservoirs in southwestern Virginia, USA. These reservoirs are: Beaverdam Reservoir (Vinton, Virginia), Carvins Cove Reservoir (Roanoke, Virginia), Falling Creek Reservoir (Vinton, Virginia), Gatewood Reservoir (Pulaski, Virginia), and Spring Hollow Reservoir (Salem, Virginia). Beaverdam, Carvins Cove, Falling Creek, and Spring Hollow Reservoirs are owned and operated by the Western Virginia Water Authority as primary or secondary drinking water sources for Roanoke, Virginia, and Gatewood Reservoir is a drinking water source for the town of Pulaski, Virginia. The dataset consists of depth profiles of fluorescence-based phytoplankton biomass measured at the deepest site of each reservoir adjacent to the dam, except in Falling Creek Reservoir, where depth profiles were also taken at four upstream sites ranging from the riverine to the lacustrine zone. Casts were taken approximately weekly from May-October and monthly from November-April. Casts were collected at Beaverdam and Falling Creek Reservoirs during all years (2014-2020); casts were collected at Carvins Cove Reservoir during 2014-2016 and 2018-2020; casts were collected at Spring Hollow Reservoir during 2014-2016 and 2019; and casts were collected at Gatewood Reservoir in 2015-2016.
DOI: 10.25934/00004808
title: Determination of the Oral Irritation and Sensitization Potential of Two Experimental Potassium Oxalate Containing Mouthrinses

description: This study is 25 days long. People participating in this study will be asked to brush their teeth two times a day. People will be assigned to a mouthwash and will rinse four times a day at the site for five days. A dentist or dental hygienist will look at the mouth, teeth, tongue and gums to make sure the mouthwash does not irritate the mouth. After Day 5 of the study, people will continue to brush two times a day and will return on Day 24 to have their mouth looked at again. People without irritation in their mouth will rinse 4 times a day at the clinical site. People will return to the clinical site the next day and have a final oral exam in which the dentist or dental hygienist will look at the mouth for irritation.
DOI: 10.25934/00004831
title: Assessment of a Potassium Oxalate-Containing Formulation for the Relief of Dentinal Hypersensitivity

description: This study is for people with sensitive teeth and involves going to the dentist for 4 visits over 6 weeks. During the first 2 weeks, you will just brush your teeth two times a day with the fluoride toothpaste provided. Then you will be assigned to a group if you qualify to continue in the study. All groups will get a marketed toothpaste and one group will also get a mouthwash with an experimental ingredient. You will have an equal chance of being assigned to any one of the three groups. For the next 4 weeks, you will brush with your assigned toothpaste and rinse with your assigned mouthwash if assigned to the mouthwash group. A dentist will look at your mouth, teeth, tongue and gums and check for sensitive teeth. The investigators will see if the mouthwash helps to reduce tooth sensitivity during the study.
DOI: 10.25934/00004871
title: Assessment of a Potassium Oxalate Containing Formulation for the Relief of Dentinal Hypersensitivity

description: This study is for people with sensitive teeth and involves going to the dentist for 4 visits over 6 weeks. At each visit the dentist will look at the mouth, teeth, tongue and gums of participants, and check for sensitive teeth. During the first 2 weeks, participants will brush their teeth 2 times a day with the fluoride toothpaste provided. Then, if they qualify to continue in the study, participants will be assigned to one of two treatment groups for the last 4 weeks. Both groups will use assigned toothpaste currently sold on the market. Both groups will each have an investigative mouth rinse to use as well. Participants will have an equal chance of being assigned to any one of the three groups. For the next 4 weeks, participants will use their assigned products according to the directions provided. At Visit 1, participants will be supervised while they brush their teeth to ensure they understand the directions. They will also have supervised use of the products at Visit 2. Results will be analyzed to assess whether the mouthwashes help to reduce tooth sensitivity during the study.
DOI: 10.5281/zenodo.5750841
title: CRISPR screen analysis

description: A dataset for a Galaxy training CRISPR screen tutorial
DOI: 10.6073/pasta/7d83e489e249cac81c7e17409abfec8e
title: NEON distributed initial soil characterization dataset (DP1.10047.001) modified for statistical analysis of organic carbon and extractable metals in Hall and Thompson (2021)

description: We compiled National Ecological Observatory Network (NEON) datasets related to the initial distributed soil sampling effort and subsetted them (removed samples with missing values for certain variables, and several samples with extreme values) for use in statistical analyses to describe relationships between soil organic carbon (SOC) and metals measured in several soil chemical extractions. The NEON provisional data products we used were DP1.10047.001 and DP1.10008.001, which were subsequently combined by NEON as a single data product DP1.10047.001, “Soil physical and chemical properties, distributed initial characterization”. These datasets were used for the analyses reported in a manuscript by Hall and Thompson (2021) in the Soil Science Society of America Journal.
DOI: 10.6073/pasta/f700cf85cf1ad3bab673b6be3511996e
title: Global litter decomposition across nitrogen fertilization experiments:Effects of Nitrogen Fertilization on Litter and Soil Decomposition

description: The influence of inorganic nitrogen (N) inputs on decomposition is poorly understood. Some prior studies suggest that N may reduce the decomposition of substrates with high concentrations of lignin via inhibitory effects on the activity of lignin-degrading enzymes, although such inhibition has not always been demonstrated. The purpose of E145 was to study the effects of nitrogen (N) addition on decomposition of seven substrates ranging in initial lignin concentrations (from 7.4 - 25.6%) over five years in eight different grassland and forest sites in central Minnesota.
DOI: 10.6073/pasta/598b079fb4359708af52969e8cf62fa1
title: Grazing and microhabitat interact to affect plant-plant interactions in subtropical seasonal wetlands, 2007-2008

description: The stress gradient hypothesis predicts that competition will be important in productive environments while facilitation will be common in environments with high stress or consumer pressure. However, abiotic stress and grazing may vary independently and even occur simultaneously. Here we examine the outcome of plant interactions in grazed wetlands where consumer pressure and abiotic stress occur concurrently. We hypothesized that cattle grazing and microhabitat would alter the outcome of plant interactions. Given that wetland edges are drier and less productive than wetland centers we expected that facilitation would be greatest in drier wetland edges due to greater abiotic stress regardless of cattle presence. We conducted an experiment for two growing seasons in ten wetlands, five exposed to cattle grazing and five fenced. Two wetland obligate plants were included (Panicum hemitomon and Alternanthera philoxeroides), and plots were assigned to three treatments 1) all neighbors removed, 2) all neighbors removed except Juncus effusus, a dominant, unpalatable plant, 3) all neighbors intact (control), in both wetland centers and edges. Differences in survival, change in height and number of leaves were assessed. In ungrazed wetlands, plant survival was higher in wetland edges vs. centers, while it did not differ in grazed wetlands. Survival in wetland edges was further increased by the presence of J. effusus. Positive interactions under grazed conditions were clear when plant height was assessed, but negative interactions affected leaf production in both ungrazed and grazed wetlands. Grazing interacts with wetland microhabitat to alter plant survival. Facilitative interactions on plant height were apparent in grazed wetlands. Understanding how plant interactions change under different biotic and abiotic contexts is important for informing ecosystem restoration and management.
DOI: 10.34740/kaggle/dsv/2880115
title: US counties COVID 19 dataset
DOI: 10.6073/pasta/2ee69498e7bbd2784267b9f8c6bfa668
title: Data and R code for “Both weather and resources influence masting in chestnut oak (Quercus montana Willd.) and black oak (Q. velutina Lam.)”, Plant Ecology, 2021

description: Masting is the synchronous and highly variable production of fruit within a population. Although several hypotheses have been proposed to explain why and how masting evolved in plants as a reproductive strategy, the factors that trigger a large reproductive effort in a particular year are still not well understood. While both weather and resources have been proposed to play an important role, testing these hypotheses has been challenging due to a lack of long-term data and appropriate experimental designs. In this manuscript, we used 18 years of acorn production data to analyze the relationship between resources, weather, and masting in black oak (Quercus velutina) and chestnut oak (Q. montana). The data were collected in southeast Ohio as part of the Fire and Fire Surrogate (FFS) study, which applied silvicultural treatments (i.e., thinning and prescribed fires) to reduce competition and manipulate resources. We found species-specific responses to the thinning and fire treatments, with an overall increase in acorn production for chestnut oak in the thin + burn treatment and an increase for black oak in the thin-only treatment compared to the control. Chestnut oak reproduction also had strong positive relationships with warm spring temperatures, and a positive change in summer temperatures compared to the previous year (i.e., summer temperatures that went from cool to warm). For black oak, warm spring temperatures increased acorn production while later starts to spring warming the year before decreased acorn production. These results support the hypotheses that both resources and weather (as a cue and as a limiting factor) are important for masting in oaks. Thus, both factors should be included in predictive models for acorn production under current and future climate conditions.
DOI: 10.5281/zenodo.5750854
title: CRISPR screen analysis

description: A dataset for a Galaxy training CRISPR screen tutorial
DOI: 10.5281/zenodo.5570010
title: CRISPR screen analysis

description: A dataset for a Galaxy training CRISPR screen tutorial
DOI: 10.6084/m9.figshare.15033552
title: Data for article "An unexpected new genus of panurgine bees (Hymenoptera: Andrenidae) from Europe discovered after phylogenomic analysis'

description: GENERAL INFORMATION<br>This repository contains supplementary files associated with the research article<br>An unexpected new genus of panurgine bees (Hymenoptera: Andrenidae) from Europe discovered after phylogenomic analysis<br>by Thomas J. Wood, Sébastien Patiny, and Silas Bossert<br>For questions and/or concerns please contact silas.bossert [at] wsu.edu<br>This repository consists of 3 files.<br>1. SPAdes_assemblies.zip<br>This zip-compressed archive contains all UCE assembly files that were generated newly for this sutdy. The archive contains a total of 8 assemblies. The article draws heavily from a previously published paper which can be found under https://doi.org/10.1111/syen.12530 (Phylogeny, biogeography and diversification of the mining beefamily Andrenidae; Systematic Entomology). The respective UCE assembly files can be accessed in the associated FigShare archive (https://doi.org/10.6084/m9.<br>figshare.14593629.v3).<br>2. Phylogeny.nwk<br>This file is the ML IQ-Tree phylogeny (in Newick format). Details on the analyses can be found in the main article.<br>3. Input_files.zip<br>This archive contains several input and config files that were used in the course of the study. It contains the concatenated DNA alignment of the 80% completeness matrix, the respective partition file that designates the individual loci, as well as the model subsets that were estimated with ModelFinderPlus. It further contains the configuration file for Spruecup.<br><br><br>
DOI: 10.6084/m9.figshare.15033552.v1
title: Data for article "An unexpected new genus of panurgine bees (Hymenoptera: Andrenidae) from Europe discovered after phylogenomic analysis'

description: GENERAL INFORMATION<br>This repository contains supplementary files associated with the research article<br>An unexpected new genus of panurgine bees (Hymenoptera: Andrenidae) from Europe discovered after phylogenomic analysis<br>by Thomas J. Wood, Sébastien Patiny, and Silas Bossert<br>For questions and/or concerns please contact silas.bossert [at] wsu.edu<br>This repository consists of 3 files.<br>1. SPAdes_assemblies.zip<br>This zip-compressed archive contains all UCE assembly files that were generated newly for this sutdy. The archive contains a total of 8 assemblies. The article draws heavily from a previously published paper which can be found under https://doi.org/10.1111/syen.12530 (Phylogeny, biogeography and diversification of the mining beefamily Andrenidae; Systematic Entomology). The respective UCE assembly files can be accessed in the associated FigShare archive (https://doi.org/10.6084/m9.<br>figshare.14593629.v3).<br>2. Phylogeny.nwk<br>This file is the ML IQ-Tree phylogeny (in Newick format). Details on the analyses can be found in the main article.<br>3. Input_files.zip<br>This archive contains several input and config files that were used in the course of the study. It contains the concatenated DNA alignment of the 80% completeness matrix, the respective partition file that designates the individual loci, as well as the model subsets that were estimated with ModelFinderPlus. It further contains the configuration file for Spruecup.<br><br><br>
DOI: 10.6084/m9.figshare.17118914.v1
title: Entrainment data Duper vs WT.xlsx

description: Entrainment data collected from syrian hamsters.
DOI: 10.6084/m9.figshare.17118914
title: Entrainment data Duper vs WT.xlsx

description: Entrainment data collected from syrian hamsters.
DOI: 10.6073/pasta/3367ebb11bb0ef4ddadb928906034351
title: Canopy-Atmosphere Exchange of Carbon, Water and Energy at Harvard Forest EMS Tower since 1991

description: The tower-based CO2 measurements and key meteorological drivers are intended to examine how regional and ecosystem level processes in a mid-latitude forest contribute to global carbon cycling. Specifically, we endeavor to understand quantitatively how and why forested ecosystems take up or release carbon, on time scales from hours to decades, and to elucidate responses to climate changes and management interventions. The tower was installed 1989 and the resulting eddy-flux measurements constitute the longest running record of the net-ecosystem carbon exchange in a North American Forest. The resulting long-term record of Net Ecosystem Exchange (NEE) has shown the effects of climate anomalies on carbon fluxes for seasonal and annual time scales. For example, reduced soil frost allows greater respiration in the winter leading to lower C sequestration. Cumulative gross photosynthesis depends on when the canopy emerges in the spring. Warmer springtime temperatures lead to greater uptake of C. As the NEE record is extended and augmented by supporting ecological measurements, we can further identify longer-term effects of climate perturbations on carbon fluxes and further define the relationship between stand history and carbon sequestration. Climatic anomalies in one season or year may have a longer-term effect on the sequestration of carbon in subsequent seasons or years. The flux and ecological measurements are coordinated with studies at other sites through the AmeriFlux network. By examining the relationships between carbon fluxes and the driving physical and biological variables across a range of sites we are enhancing understanding of the processes that control NEE.
DOI: 10.6073/pasta/c5dcdde09dbbee91764e3e6f5ee81696
title: Stream Metabolism in Marsh Creek, Idaho, USA 2016-2017

description: Most research on stream metabolism uses a single reach to characterize a stream. We aimed to characterize variation in stream metabolism rates and the controls on metabolism along a 75-km agricultural stream. We continuously measured dissolved oxygen, discharge, conductivity, temperature, light, and turbidity using a variety of sensors deployed at 6 locations along Marsh Creek, a stream in southeastern Idaho. Monthly grab samples were collected for water chemistry throughout the study period, and aquatic vegetation was surveyed from May through September. Data were collected from October 2016 through October 2017.
DOI: 10.6084/m9.figshare.17118920
title: Tethys_eliptical_Crater_final_V2.mpk

description: ArcGIS Map package file to accompany Ferguson et al., 2021/22. This includes all final crater layers used to conduct the analysis. File made in ArcMap 10.8.1
DOI: 10.6073/pasta/95371e60f1580a4739b1cb79cf3a50fe
title: Water Levels from the Shark River Slough and Taylor Slough, Everglades National Park (FCE), South Florida from May 2001 to Present

description: Water levels for SRS4 are recorded at 1h intervals. Water level recorder is located in the mangrove forests approximately 100 m inland at Tarpon Bay. Water levels or SRS5 are recorded at 1h intervals. Water level recorder is located in the mangrove forests approximately 100 m at the Shark River Slough.Water levels for SRS6 are recorded at 1h intervals. Water level recorder is located in the mangrove forests approximately 100 m at the Shark River Slough. Water levels for TS/Ph6a are recorded at 1h intervals. Water level recorder is located in the mangrove forests approximately 30-40 m inland at the Taylor River Slough. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. Water levels for TS/Ph7a are recorded at 1h intervals. Water level recorder is located in the mangrove forests approximately 30-60 m inland at the Taylor River Slough. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. Water levels for TS/Ph8 are recorded at 1h intervals. Water level recorder is located in the mangrove forests 30 m inland at the Joe Bay area. Water level recorder is located in between of two 20 by 20 m permanent monitoring plots. All water level data is measured by Louisiana State University.
DOI: 10.6084/m9.figshare.17118917
title: Nunes et al. Data FEBS Open Bio.xlsx

description: Failure is hard-wired into the scientific method and yet teaching students to productively engage with failure is not foundational in most biology curricula. To train successful scientists, it is imperative that we teach undergraduate science students to be less fearful of failure and to instead positively accept it as a productive part of the scientific process. In this article, we focus on student perceptions of the stigma of failure and their associated concerns to explore how failure could be better supported within and beyond a university context. Through a survey of first-year biology students, we found that societal and familial pressures to succeed were the greatest contributing factors to students’ fear of failure. In student suggestions on how to reduce the stigma of failure within and beyond the university context, the most common theme identified across both contexts was for increased discussion and open communication about experiences of failure. Importantly, student comments in this study bring attention to the role of factors beyond the classroom in shaping student experiences of failure within their biology courses.
DOI: 10.6084/m9.figshare.17118917.v1
title: Nunes et al. Data FEBS Open Bio.xlsx

description: Failure is hard-wired into the scientific method and yet teaching students to productively engage with failure is not foundational in most biology curricula. To train successful scientists, it is imperative that we teach undergraduate science students to be less fearful of failure and to instead positively accept it as a productive part of the scientific process. In this article, we focus on student perceptions of the stigma of failure and their associated concerns to explore how failure could be better supported within and beyond a university context. Through a survey of first-year biology students, we found that societal and familial pressures to succeed were the greatest contributing factors to students’ fear of failure. In student suggestions on how to reduce the stigma of failure within and beyond the university context, the most common theme identified across both contexts was for increased discussion and open communication about experiences of failure. Importantly, student comments in this study bring attention to the role of factors beyond the classroom in shaping student experiences of failure within their biology courses.
DOI: 10.6084/m9.figshare.17118923
title: Dione Elliptical Crater Map Package

description: ArcGIS Map package file to accompany Ferguson et al., 2021/22. This includes all final crater layers used to conduct the analysis. File made in ArcMap 10.8.1
DOI: 10.15468/dl.bjttgx
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pentameris trisetoides (Hochst. ex Steud.) Galley & H.P.Linder"
 ]
}

 The dataset includes 39 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072384-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wx59q6
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pharnaceum ciliare Adamson"
 ]
}

 The dataset includes 24 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072385-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zgpuc
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phyllanthus balgooyi Petra Hoffm. & A.J.M.Baker"
 ]
}

 The dataset includes 10 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0072386-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.