cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kwcnhj4tjb
title: Opisthorchis viverrini infection induces metabolic and fecal microbial disturbances in association with liver and kidney pathologies in hamsters

description: The raw gut bacterial sequencing data obtained from hamsters treated with different interventions including 1) O. viverrini-infected hamsters (1 month 4 months p.i.) and 2) non-infected control group (NC at 1 m and NC at 4 m).
DOI: 10.17632/sx72xyfvbv
title: Prospective Motion Correction and Automatic Segmentation of Penetrating Arteries in Phase Contrast MRI at 7 T 

description: MRI images and segmentation code for a study titled "Prospective Motion Correction and Automatic Segmentation of Penetrating Arteries in Phase Contrast MRI at 7 T".  A preprint of the study can be found at https://www.biorxiv.org/content/10.1101/2022.01.20.477093v1
DOI: 10.17632/tr2zxk67yg
title: Binding and molecular basis of bat-RaTG13 virus to 25-species ACE2s including hACE2 , a study of K. Liu et al

description: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has been spreading worldwide and causing a global pandemic. Bat-origin RaTG13 is currently the most phylogenetically related virus. Here, we obtained the complex structure of RaTG13 receptor binding domain (RBD) with human ACE2 (hACE2), and further evaluated the binding of RaTG13 RBD to 24 additional ACE2 orthologs. By substituting residues in RaTG13 RBD with their counterparts in SARS-CoV-2 RBD, we found that residue 501, the major position found in VOCs 501Y.V1/V2/V3, plays a key role in determining the potential host range of RaTG13. We also found that SARS-CoV-2 could induce strong cross-reactive antibodies to RaTG13 and identified a SARS-CoV-2 MAb, CB6, that could cross-neutralize RaTG13 pseudovirus. These results elucidate the receptor binding and host-adaption mechanisms of RaTG13 and emphasize the importance of continuous surveillance of coronaviruses (CoVs) carried by animal reservoirs to prevent another spill-over of CoVs.
DOI: 10.17632/xzycy8m6tb
title: A method to enrich polypeptidyl-tRNAs to capture snapshots of translation in the cell

description: raw _gel_images
DOI: 10.17632/ynm4srkwwp
title: picture stimuli

description: picture stimuli used in the online experiment
DOI: 10.17632/zhp6d2kjjb
title: Echinococcus granulosus ubiquitin-conjugating enzymes (E2D2 and E2N) promote the formation of liver fibrosis in TGFβ1-induced LX-2 cells

description: These are the raw images of the article.
DOI: 10.17632/225gvssjwy
title: Study of Ras Mutations’ Prognostic Value in Metastatic Colorectal Cancer: STORIA Analysis

description: Cancers (Basel). 2020 Jul; 12(7): 1919. Published online 2020 Jul 16. doi: 10.3390/cancers12071919 Background: Colorectal cancer (CRC) is the second most common cause of cancer-specific death in both sexes in Western countries. KRAS mutations occur in about 50% of metastatic CRCs (mCRCs). The prognostic value of specific KRAS mutations still remains unexplored and unclear. Methods: Two hundred and forty KRAS wild-type and 206 KRAS/NRAS mutant consecutive unresectable mCRC patients with PS Eastern Cooperative Oncology Group (ECOG) 0 or 1, aged &lt; 80 years, and with a life expectancy &gt;3 months entered into this study. DNA was extracted from paraffin-embedded formalin-fixed tumour tissues, and it was sequenced with the Oncomine Solid Tumour DNA kit (Thermo Fisher Scientific, Waltham, MA, USA). Data were analysed using the Torrent Suite Software v5.0 (Thermo Fisher Scientific). The primary outcome was the analysis of the prognostic role of different KRAS mutations in terms of overall survival (OS). Results: There were no significant differences among the most prevalent mutations (p.G12D, p.G12V, p.G13D, p.G12A, p.G12C, and p.G12S) in terms of age (&lt;65 vs. ≥65 years), gender (male vs. female), grading (G1/G2 vs. G3), side of primary tumour (left vs. right), pT, and pN. At the median follow-up of 25.6 months, there were 77 deaths in KRAS-mutated patients and 94 in wild-type patients. Three homogeneous prognostic groups were identified: wild-type patients (group A, median survival: 27.5 months), p.G13D/p.G12A/p.G12V/p.G12D mutants (group B, median survival: 17.3 months), and p.G12C/p.G12S mutants (group C, median survival: 5.0 months, p &lt; 0.0001 according to Log Rank test). Upon multivariate analysis, metastatic involvement and p.G12C/p.G12S KRAS mutation group C (vs. other mutations) emerged as independent prognostic variables for survival. Conclusions: We show that mutant KRAS is a negative prognostic factor and that p.G12C/p.G12S variants present the worst clinical courses. This information suggests a clear difference among KRAS mutations, and it will be useful to test potentiated and/or innovative therapeutic strategies in p.G12C/p.G12S metastatic CRC patients.
DOI: 10.17632/5nkytxsk2t
title: effect-heat-spike-esfenvalerate-genotype

description: Data used in 'How a heat spike shapes pesticide toxicity strongly differs among genotypes in the water flea Daphnia magna' in ... (Authors: Vienna Delnat, Julie Verheyen, Ine Van Hileghem and Robby Stoks, DOI: ...).
Abbreviations: IA model - independent action model, MDR – model deviation ratio
DOI: 10.17632/646k8yzwj9
title: species_habitat_models_4_urban_devs

description: Hello, 

Here are the data & code to reproduce outputs reported in Cooper et al., 2022: Using species-habitat models to predict bird counts from urban development plans.
The uploaded data includes GIS maps of each development for each scenario & code to reproduce the predictions figures & tables reported in the paper. 
The models are based upon Plummer et al., 2020. For data relating to the models, please see https://doi.org/10.1111/1365-2664.13703.
The code & shapefiles to convert developments into model metrics are substantial in size and require licensed Land Cover Map 2007 & OS MasterMap 2010. 
Please contact joe.cooper@bto.org if this is required. 

scen is a folder seperating all 6 scenario dataset (baseline & 5 manipulations). 
Scenario_List.xlsx contains the manipulations applied to the baseline to produce the scenarios. 

Each folder contains:

a zip folder containing the shapefile of all developments
devdets.Rdata which gives the raw metrics for the developments  
urbandf.Rdata which gives the normalised metrics for the development relative to the wider dataset used in Plummer et al 2020

Models.Rdata = The models used in Plummer et al., 2020
Plummer2020_JApplEcol_data.RData = The dataframe of covariates used in Plummer et al., 2020 to produce those models
predictions_code.Rdata = script to assess urbandf in a loop to produce the outputs, figures & tables reported. 
20_rebuild_new_developments.R = The code used to turn shapefiles of a development merged with LCM & OSMM into the input metrics for the model
DOI: 10.17632/86yt6wgmsx
title: Data for: Fronto-parietal Brain Areas Contribute to the Online Control of Posture during a Continuous Balance Task

description: Description of data files EEG Data files for Fig. 2: • This folder contains data files to generate Fig. 2 Behavioral Data files for Fig. 3: • This folder contains data files to generate Fig. 3 (RMS COP, PL, iTTB). EEG Data files for Figs 4-12: • This folder contains data files to generate Fig. 4 through Fig. 12. • There are 2 folders – one for the TMSSMA group and another for the TMSSHAM group. • Within each subject folder – o .eeg, .vhdr, .vmrk are default files generated by Brain vision software that contains raw data and configurations. o .bvct, .elc are digitized channel files o .txt is some other description for data recording o filenames:  baseline_EO: baseline with eyes open  baseline, 2, 3: baselines with eyes closed  flos: FLOS tasks  trial1, 2, 3: tasks that we performed in order
DOI: 10.17632/b9tx3bgkct
title:  PERFORMANCE OF PREGNANT WEST AFRICAN DWARF GOATS FED GUINEA GRASS BASAL DIET AND CASSAVA PEEL AND LEAF MEAL BASED CONCENTRATE

description: This study evaluated the performance of pregnant WAD goats fed Guinea grass basal diet and cassava peel and leaf meal based concentrate supplement. Twelve (12) West African dwarf goats (does) after their second parity with average weight (19.378 ± 2.30 kg) (mean ± SD) were used. Goats with undesired features such as supernumerary teats, mange, desired characteristics were separated. Three pregnant does were randomly allocated in a completely randomized design (CRD), to the one of the four (4) experimental treatments of Guinea grass basal diets and concentrate supplements at 50 %. The hypothesis was that dietary inclusion of cassava leaves and peels at different levels would or would not affect the performance of pregnant goats.The control (T1) was compounded from conventional feed ingredients (wheat offal, palm kernel cake and other feed ingredients) which are expensive and not easily assessable to the local goat farmers who are in control of a larger population of West African dwarf goats. The other treatments (2, 3 and 4) were compounded by replacing the wheat offal and palm kernel cake with cassava peel meal and cassava leaf meal respectively at graded levels. Cassava peel and leaf meal are high energy and crude protein respectively and values are comparable to those of wheat offal and PKC. The diets were T1 (control), T2 (25 % replacement of wheat offal (WO) and Palm kernel cake (PKC), with cassava peel meal (CPM) and cassava leaf meal (CLM) respectively, T3 (50 % replacement of WO and PKC, with CLM and CPM respectively) and T4 (75 % replacement of WO and PKC, with CLM and CPM respectively). Feed was offered at 50 g DM /Kg BW and water was given ad lib. Feed intake, weight changes, feed conversion ratio, digestibility were monitored for pregnant goats. Dry matter intake from grass likewise concentrate was non – significant across the four treatments. Although, the observed variation was not significant, the total DM intakes of pregnant does fed diets of replacement of WO and PKC with CPM and CLM were higher than that of the control, apart from T2, and the values ranged from 588.60, 555.12, 610.36 and 617.63 g/d for TI, T2, T3 and T4 respectively. The highest weight gain was recorded in pregnant goats fed 50 % replacement of wheat offal and PKC with CPM and CLM (T3), while the lowest was in T4 (75 % replacement with CPM and CLM). Furthermore, the replacement levels in the respective treatments did not affect apparent digestibility of DM (which was above 80 % for the four treatments), CP (which increased non – significantly with increase in CLM content of the diet), EE, NDF, ADF and HMC of the pregnant WAD goats significantly. However, apparent digestibility of ash was significantly lowest in the control and highest in the diets replaced with CPM and CLM. This investigation has shown wheat offal and PKC can be replaced at 25 %, 50 % and 75 %, without negative effect on foetal development and successful gestation.
DOI: 10.17632/c67fdhswpz
title: ASIV

description: ASIV
DOI: 10.17632/cv4y7fmsh3
title: LINF_340021200

description: D-isomer specific 2-hydroxyacid dehydrogenase
Leishmania infantum (strain JPCM5)
DOI: 10.17632/dmnxczrg5k
title: LINF_090019000

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/dvtdd9jd4h
title: scientific trajectories about H2

description: Database about hydrogen as a fuel in relation to their scientific trajectories.
DOI: 10.17632/jx8n4cyz7v
title: Odd chain fatty acids are not robust biomarkers for dietary intake of fiber

description: The aim of this study is to validate whether OCFAs (Odd chain fatty acids), specifically, pentadecanoic acid (C15:0) and heptadecanoic acid (C17:0) are potential biomarkers of fermentable fiber in two independent studies using a validated analytical method by Zhao et al (Zhao et al., 2017). OCFAs were first assessed in a fiber supplementation study in which 21 participants received 10g/day dietary fiber for 7 days, with blood samples collected on the final day at a 420-minute study visit. Details regarding participant recruitment and eligibility, demographics, dietary interventions, study design have been published elsewhere (Byrne et al., 2019). OCFAs were further assessed in a highly controlled inpatient setting in which 19 participants consumed a high fiber (45.1g/day) and a low fiber diet (13.6g/day) for 4 days. Details regarding participant recruitment and eligibility, demographics, dietary interventions and study design have been published elsewhere (Garcia Perez et al., 2017). Sample from both studies were prepared following the extraction and derivatization protocol previously developed by Zhao et al (Zhao et al., 2017). Raw data from GC-MS targeted analysis were exported to MassHunter Qualitative Analysis Software (vB.07.01). The targeted metabolites were identified by comparing mass spectra and retention index in the in-house reference library. Thereafter, the dataset was exported to MassHunter Quantitative Analysis Software (vB.07.0) to perform baseline correction, smoothing, noise reduction, deconvolution, library searching and data integration in each chromatogram from samples and the calibration standards. The responses of the sample and standards were normalized by calculating the ratio of the peak area and the corresponding area of the internal standard as the corrected area. The squared correlation coefficient (R2) was used as a measure of linearity of the calibration curve in which the known amounts of C15:0 and C17:0 was linearly regressed against corrected area. In the first study we found that there was no effect of fiber supplementations on the serum concentrations of C15:0 and C17:0, as the changes in OCFAs concentrations were not different between control and dietary fibre supplementations (C15:0, p=0.404; C17:0, p=0.288). There were no differences in the levels of OCFAs over time, as the levels of OCFAs were not different between 0, 240, 420 minutes (C15:0, p=0.074; C17:0, p=0.503). In the second study, no differences in fasting OCFAs concentrations were found between a high fiber (45.1g/day) and a low fiber diet (13.6g/day) after 4-day inpatient period. Furthermore, OCFAs levels were not significantly different between high and low fiber diets measured after breakfast and after lunch (C15:0, p=0.286, p=0.586; C17:0, p=0.744, p=0.433 respectively). Therefore, current work do not support the proposed relationship between dietary fiber and OCFAs and suggests that further validation is required.
DOI: 10.17632/k4ycfhbmbx
title: A hierarchical approach to combine histological grade and immunohistochemical factors to identify high-risk luminal breast cancers

description: Dataset for submitted paper "A hierarchical approach to combine histological grade and immunohistochemical factors to identify high-risk breast luminal cancers"
DOI: 10.17632/mvhdnk77pc
title: Geochronological and geochemical data for early Neoproterozoic (950一787 Ma) igneous rocks in the Songnen Massif

description: Supplementary Table 1: Zircon U-Pb dating results for Neoproterozoic igneous rocks in the Songnen Massif;
Supplementary Table 2: Major (wt%) and trace elements (ppm) data for Neoproterozoic igneous rocks in the Songnen Massif;
Supplementary Table 3:  Lu–Hf isotopic data for Neoproterozoic igneous rocks in the Songnen Massif
DOI: 10.17632/pfdfzpwgjd
title: Lama-PH8_maxicircle

description: Leishmania amazonensis mitochondrial genome
strain IFLA/BR/1967/PH8
DOI: 10.17632/rx52dsdv4p
title: Orogenic cyclicity and episodic tectono-magmatic processes in the formation of the Paleozoic northern Yili magmatic arc, Central Asian Orogenic Belt

description: Supporting Information, including a text file (analytical methods, data filtered methods, and Figures S1 to S3) and 11 supplement tables (Table S1 to S11)
DOI: 10.17632/s2mmc2f966
title: Synchonous melanomas

description: Supplementary table 1. Patient characteristics comparing single, multiple and synchronous melanomas
DOI: 10.17632/t8hpjvgp8y
title: Datasets PM2.5 simulated using WRF-Chem model

description: Data Statement

 
Number of vehicles dateset in Lima were obtained from a report by the Instituto Nacional de Estadistica e Informatica (INEI; translated as “National Institute of Statistics and Informatics”).



The vertical variation of potential (θ), equivalent potential (θe), and virtual (θV) temperatures, the atmospheric soundings dataset at the Jorge Chavez airport (JCAi; location: 12° S, 77°11' W; altitude: 13 MASL) in Lima were obtained from University Wyomin website: http://weather.uwyo.edu/upperair/sounding.html. The maximum (Tmax), minimum (Tmin) air temperature dataset measured at the Jorge Chavez airport (JCAi) in Lima were obtained from the Iowa State University website:
https://mesonet.agron.iastate.edu/sites/obhistory.php?station=SPJC&network=PE__ASOS&metar=0&madis=0&year=2016&month=2&day=2

Spatial-temporal simulations of hourly measurements of air pollutants and meteorological variables dataset were carried out, for both vehicular emission gasses and aerosols in the WRF-Chem (version 4.0) model in Lima, which was used as the simulation control case.

Spatial-temporal simulations of vehicular gas emissions, without considering vehicular aerosol-emissions in the WRF-Chem (version 4.0) model in Lima, which was used as the sensitivity experiment.


The control case in the WRF-Chem model results hourly variations in the PM2.5 concentration dataset for the same site of the four automatic air-quality monitoring stations (AAQMS) in the Metropolitan Area of Lima and Callao (MALC).

The sensitivity scenario in the WRF-Chem model results hourly variations in the PM2.5 concentration dataset for the same site of the four automatic air-quality monitoring stations (AAQMS) in the Metropolitan Area of Lima and Callao (MALC).
DOI: 10.17632/cf86yrfr6y
title: Alignment of 260 Echinococcus granulosus sensu stricto nad5 partial sequences

description: Fasta file with the alignment of nad5 mitochondrial gene fragment (670 bp) of E. granulosus sensu stricto. The dataset contains 260 DNA sequences representing all the haplotypes available as of 10 October 2023 (for additional data on the haplotypes see Supplementary Table 3).
DOI: 10.17632/jwfyn6snyc
title: Data on the diversity of lactic acid bacteria isolated from traditional sourdough and their leavening Ability.

description: In this dataset, we isolate lactic acid bacteria  from traditionally sourdough microbiota and determine their functional properties, including acidification, growth rate, EPS biosynthesis, and Gaz production (CO2), as well as investigate interactions between yeast and lactic acid bacteria.
This data would be  important for industries with special needs for microorganisms at various capacities and can satisfy consumers’ demands by reducing the use of food additives.
DOI: 10.17632/kk5xtcbwxj
title: Geochemical elements of amphibole 

description: Geochemical elements of amphibole
DOI: 10.17632/nhghwkw445
title: PM10 concentrations in the region of West Macedonia, Greece for a 10-year period

description: Dataset of PM10 daily average concentrations for a 11-year period The data presented were collected from nine locations from 2010 to 2020 in the region of western Macedonia, Greece
DOI: 10.17632/st97sv85bb
title: Happiness of students of higher educational institutions during pandemic 2021

description: Its a data from 642 Indian respondents (students). Its checked happiness difference between male and female students during pandemic. Data is stored in SPSS. Independent t-test, multiple regression and AMOS were used for structural equation modelling. It was gathered through physical forms directly from students to have more authentic results.
DOI: 10.17632/wn3tj2v5j7
title: Screening antimicrobial peptides and probiotics using multiple deep learning and directed evolution strategies

description: The raw data contains the antibacterial activity test, peptide screening, peptide purification, PANCE for SrtA, structure prediction and whole genome sequencing.
DOI: 10.17632/zf3fvfp26p
title: Calcium isotope behavior during carbonate weathering 

description:  In this paper, we present detailed results of the concentrations and isotopic compositions of Ca of bulk saprolites, exchangeable, acid-leachable and residual phases of a weathering profile developed on the marine carbonates.
DOI: 10.17632/2s7s7536yt
title: The BN models and the database

description: This contains three BN models for predicting gravelly soil liquefaction and their training, validating and testing data
DOI: 10.17632/3xvcfskhwz
title: Aboveground Tree Carbon of Teak Plantations in West Bago Mountains, Myanmar

description: Our research was conducted in teak plantations established in western parts of the Bago Mountains, Pauk Khaung Township, Myanmar to assess the tree carbon content of the plantations of different ages by two different management regimes.
DOI: 10.17632/5dwtcd3c8k
title: The experimental data of the paper " A ppb-level optical H2S sensor based on high temperature chemical conversion combined with UV-DOAS"

description: Providing experimental data of the paper " A ppb-level optical H2S sensor based on high temperature chemical conversion combined with UV-DOAS".
DOI: 10.17632/6996v22hm5
title: LINF_340018500

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/6kvrm292yv
title: Evaluation of Implementation Research for Digital Technologies and TB toolkit and workshop

description: Results from an evaluation survey conducted among participants of a training workshop on conducting implementation research on the use of digital technologies in national responses to TB
DOI: 10.17632/74ccpj55gf
title: Density functional theory calculations of potential energy surface for twisted bilayer graphene with vacancies in one of the layers

description: The potential energy surface of interlayer interaction of twisted bilayer graphene with vacancies in one of the layers is investigated via density functional theory (DFT) calculations with van der Waals corrections. The moiré pattern with coprime indices (2,1) (twist angle 21.8 degrees) is considered. The VASP code is used. First the geometry of the 5/9 reconstructed vacancy is obtained in the simulations cells that correspond to 2x2 and 3x3 unit cells of the moiré pattern. Then the optimal interlayer distance is found for the defect-free twisted layers. For this sake, the dependence of the energy of the defect-free twisted layers on the interlayer distance is studied. The potential energy surface for in-plane relative displacements of the layers is computed for the twisted bilayer with one vacancy in the 2x2 simulation cell at the optimal interlayer distance. Finally, energy dependences along lines connecting energy minima are calculated. 1x1_opt_distance.tar.gz: Dependence of the energy of the defect-free twisted layers on the interlayer distance. 2x2vac_sp_opt_1layer_newcell_flat.tar.gz: Optimization of geometries of the 5/9 reconstructed vacancy in the 2x2 simulation cell. 3x3vac_sp_opt_1layer_newcell_flat.tar.gz: Optimization of geometries of the 5/9 reconstructed vacancy in the 3x3 simulation cell. pes_16x17.tar.gz: Potential energy surface for twisted bilayer with one vacancy in the 2x2 simulation cell at the optimal interlayer distance. pes_lines.tar.gz: Energy dependences along lines connecting energy minima.