cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.101595
title: Research data supporting "Theory of flow-induced covalent polymer mechanochemistry in dilute solutions"

description: This is the dataset and software supporting the study *Theory of flow-induced covalent polymer mechanochemistry in dilute solutions* by Etienne Rognin, Niamh Willis-Fox, Ronan Daly, Institute for Manufacturing, Department of Engineering, University of Cambridge, 17 Charles Babbage Road, Cambridge CB3 0FS, United Kingdom. Contents -------- Main file ^^^^^^^^^ Use the Jupyter Notebook ``Supporting information.ipynb`` to run the data analysis and recreate the figures of the paper. Alternatively, open ``Supporting information.pdf`` to view the notebook outputs in a PDF reader without having to install and run the scripts. Raw data ^^^^^^^^ The folder ``bead-rod_dataset`` contains the results of bead-rod model simulations. For each simulation there is binary Python ``.npz`` file containing the data, and a text ``.json`` file containing metadata (such as date of the simulation, parameters...) The data is imported using ``np.load`` function which creates a Python dictionary for each simulation file. This dictionary contains the following labels: 1. ``t`` the time axis. 2. ``gradU`` the time series of velocity gradients used as forcing terms in the bead-rod simulation. 3. ``g_max`` the time series of the maximum tensile force, for each molecule of the simulation ensemble. 4. ``i_max`` the time series of the positions of the maximum force in the chain (not used in this study) 5. ``g_12`` the time series of the tensile force at the center of the chain, for each molecule. 6. ``A_average`` the time series of the average conformation tensor (second-order moment of the end-to-end vector). Used in section 4 for model validation. Note that the bead-rod algorithm and dimension normalization are described in a previous study (see Rognin et al. https://www.repository.cam.ac.uk/bitstream/1810/279443/1/multiscale_revision_clean.pdf) Other ^^^^^ The notebook ``JHTD_turbulence.ipynb`` has been used to extract data from the Johns Hopkins Turbulence Databases and is provided here for illustrative purposes only (it is not necessary to run this file). License ------- CC-BY-4.0 To view the full license, visit: https://creativecommons.org/licenses/by/4.0/legalcode Installation ------------ In the target directory, clone this repository:: git clone https://github.com/etiennerognin/flowmechanochem_dataset.git Usage ----- Run the notebook ``Supporting information.ipynb`` (you will need to have Jupyter installed, see https://jupyter.org/). The Python distribution will need to have packages listed in ``requirements.txt``.
DOI: 10.6084/m9.figshare.c.3608513_d2.v1
title: Additional file 6: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Intersections between annotation files calculated with P-clouds, TRF, and REPET. Venn diagram describing the overlaps between the annotation files calculated with P-clouds, TRF (SSR), REPET (TE + DM), and CNVs [11]. Values are percentage of coverage in galGal4. (ODT 56 kb)
DOI: 10.6084/m9.figshare.c.3608513_d3.v1
title: Additional file 1: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Conditions of use for programs P-clouds and Red. An analysis of parameters to use with P-clouds and Red is presented in order to optimize the calculation of the amount of repeats in an eukaryotic genome. (ODT 36 kb)
DOI: 10.6084/m9.figshare.c.3608492_d7.v1
title: Additional file 5: Table S5. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Novel ORFs in the barley mitochondrial genome. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3608513_d4.v1
title: Additional file 8: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Diversity of CR1 within galGal4. The clustering of CR1 copies into subfamilies was re-investigated using SiLiX. Eight subfamilies were found, 7 of them matching with the Repbase sub-families CR1-C, CR1-D, CR1_F, CR1-G, CR1_GG, CR1-H, and CR1-Y. Their respective abundance in galGal4 was summarized in Table S2. (ODT 30 kb)
DOI: 10.6084/m9.figshare.c.3608492_d8.v1
title: Additional file 6: Table S6. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Repeated sequences in the mitochondrial genome of H602. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3608513_d5.v1
title: Additional file 11: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Proteins encoded by the remnant polinton in the RFJ and turkey genomes. (ODT 23 kb)
DOI: 10.6084/m9.figshare.c.3608522_d2.v1
title: Additional file 9: of Polymorphisms and minihaplotypes in the VvNAC26 gene associate with berry size variation in grapevine

description: Diversity values and neutrality tests for the grapevine VvNAC26 gene. The number of individuals (n), haplotypes (H), segregating sites (S), nucleotide diversity (π), Watterson’s estimate (θ), and Tajima’s D and Fu and Li’s D* tests of neutral evolution are shown for the 114 grapevine varieties included in this study and for the three genetic groups. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3608528_d1.v1
title: Additional file 1: of Navigating barriers: two-year follow up on recommendations to improve the use of maternal health guidelines in Kosovo

description: Interview guide. (ZIP 54 kb)
DOI: 10.6084/m9.figshare.c.3608513_d6.v1
title: Additional file 7: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Correspondence between the names of consensus describing TEs in Repbase and ISB, and the TE models calculated with REPET. Results are summarized within a table. (ODS 27 kb)
DOI: 10.6084/m9.figshare.c.3608492_d10.v1
title: Additional file 7: Table S7. of Mitochondrial genome sequences from wild and cultivated barley (Hordeum vulgare)

description: Syntenic region between the mitochondrial genome and chloroplast genome in barley. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3608528_d2.v1
title: Additional file 2: of Navigating barriers: two-year follow up on recommendations to improve the use of maternal health guidelines in Kosovo

description: Workshop summary document. (ZIP 42 kb)
DOI: 10.6084/m9.figshare.c.3608513_d7.v1
title: Additional file 9: of Deep landscape update of dispersed and tandem repeats in the genome model of the red jungle fowl, Gallus gallus, using a series of de novo investigating tools

description: Nucleic acid sequences of retroCalimero, retroSaturnin and retroTux. The consensus sequences of these three LTR elements were supplied. (ODT 37 kb)
DOI: 10.17863/cam.36098
title: Research data supporting Tunable bioactivity and mechanics of collagen-based tissue engineering constructs: A comparison of EDC-NHS, genipin and TG2 crosslinkers

description: The following data files are provided: Python files containing the raw data plotted to obtain 1) Ninhydrin.py for degree of crosslinking 2) TensileTest.py for average tensile modulus 3) LDHFibroblastCellAttachment.py for LDH cell adhesion assay 4) MTSCellProliferation.py for MTS cell proliferation assay 5) LDHCellDeath.py for LDH cytotoxicity assay 6) CellSpreadingMeasurements.py for quantitative cell values 7) Raw Mechanical Testing Data.xls for raw mechanical testing data and film measurements 8) Cell Images.zip for live-dead imaging and cell spreading images 9) PCR.py for the cycle threshold for GAPDH and the Col-I genes 10) MMPElisa.py for the raw values of the MMP-1 protein expression. 11) Swelling.py for the raw values of the water uptake of the collagen films. Please see the manuscript for further details.
DOI: 10.6084/m9.figshare.c.3608615_d1.v1
title: Additional file 4: of The cross-interaction between global and age-comparative self-rated health on depressive symptomsâ  considering both the individual and combined effects

description: Table S1. The association between covariates and SRHs. SRH means self-rated health. SRH-global is general self rated health, while SRH-age is age-comparative selfâ  rated health. Chi-square tests were performed for statistical tests. (21 kb)
DOI: 10.6084/m9.figshare.c.3608678_d4.v1
title: Additional file 1: Figure S1. of Mice lacking the conserved transcription factor Grainyhead-like 3 (Grhl3) display increased apposition of the frontal and parietal bones during embryonic development

description: 3D rotating movies of representative E18.5 skulls. Representative movies allowing better visualisation of the skull bones and coronal sutures in both WT (A) and Grhl3 â  /â   (B) E18.5 embryos. (ZIP 13 mb)
DOI: 10.6084/m9.figshare.c.3608687_d2.v1
title: Additional file 1 of A measure of the impact of CV incompleteness on prediction error estimation with application to PCA and normalization

description: Zipped folder containing all necessary R-Code to reproduce and evaluate the real-data analyses and simulations presented in the paper and in Additional file 2, as well as Rda-files containing all fold errors computed in the real-data analysis enabling fast evaluation of the corresponding results. (ZIP16691 kb)
DOI: 10.6084/m9.figshare.c.3608702_d1.v1
title: Additional file 1: Table S1. of 
                     Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics

description: Strain names and accession numbers of available genome used for the study. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3608678_d5.v1
title: Additional file 4: Figure S5. of Mice lacking the conserved transcription factor Grainyhead-like 3 (Grhl3) display increased apposition of the frontal and parietal bones during embryonic development

description: Analysis of gene expression in the developing coronal sutures of WT and Grhl3−/− embryos at E18.5. (A-B) The expression of β-galactosidase (corresponding to the LacZ transgene inserted within the Grhl3 locus, simultaneously disrupting gene function, as well as acting as a reporter to confirm presence of the deleted allele [7]) was used to confirm loss of Grhl3. The expression of total FGFR1 (C-D), pFGFR1 (E-F), FGFR2 (G-H), Twist (I-J), Runx2 (K-L) and Noggin (M-N) was examined by immunohistochemical analysis. Other than an apparent loss of pFGFR1 in the most superficial layers of the surface ectoderm in Grhl3 −/− embryos at E18.5 (compare E with F; arrowheads), no significant differences in the expression of any of these genes was detected at E18.5, within the calvaria, dura or suture regions. (ZIP 362 kb)
DOI: 10.6084/m9.figshare.c.3608702_d2.v1
title: Additional file 2: Table S2. of 
                     Brachyspira suanatina sp. nov., an enteropathogenic intestinal spirochaete isolated from pigs and mallards: genomic and phenotypic characteristics

description: Functional distribution of genes in different COG categories of strains B. suanatina AN4859/03, B. hyodysenteriae B78T, B. hyodysenteriae WA1 and B. intermedia PWS/AT. (XLSX 10 kb)
DOI: 10.17863/cam.96818
title: BEFTA Lepidoptera Raw Data 2013-2015

description: Excel file containing supporting data for “Habitat heterogeneity supports day-flying Lepidoptera in oil palm plantations”, collected from 2013 – 2015 in SMARTRI industrial oil palm plantations in Indonesia through the BEFTA program. Sheets are as follows: 1. Collated Count – Morphospecies. Abundance data for Lepidoptera populations in industrial oil palm plantations, grouped to morphospecies. Data is identified to species level where possible. Data was collected from February 2013 – Feb 2016 across 21 study plots with differing levels of understory management. Column C ‘Box/Road’ refers to the location of the plot (see full manuscript for further information). Column E ‘Before/After’ refers to if the sample was taken before herbicide application or before. Column K ‘Treatment’ refers to the understory treatment applied to the plot (see full manuscript for further information). 2. Collated Count – Split. Contains the same data and columns as sheet 1, but with species not grouped to morphospecies. 3. Collated Activity. Morphospecies data on the behaviour of Lepidoptera in the same surveys as sheets 1 and 2. 5 – 14: Raw data sheets which were used to produce sheets 1-3.
DOI: 10.60797/irj.2024.150.10.1
title: Распределение больных по этиологии и уровню обтурационной тонкокишечной непроходимости

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.60797/irj.2024.150.10.2
title: Оперативные вмешательства при различных видах ОТКН

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.60797/irj.2024.150.10.3
title: Распределение (группы) больных ОТКН по степени ВБГ

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.60797/irj.2024.150.10.5
title: Распределение больных по способам декомпрессии в III – IV группах

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.6084/m9.figshare.c.3608723_d1.v1
title: MOESM2 of A proteomic evaluation of urinary changes associated with cardiopulmonary bypass

description: Additional file 2: Table S2. The log(2) protein values for DDA/IDA at time-points START and CPB-1-hour.
DOI: 10.17863/cam.78759
title: Supplementary Code and Files for: J. M. Lawrence et. al. "An Expanded Toolset for Electrogenetics" (2022)
title: "An Expanded Toolset for Electrogenetics" (2022)''

description: %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Within the "Code" folder can be found all data and the files required to process them 1) Raw data files for each figure are contained within .csv files. E.g. F2e_raw.csv contains the data displayed in figure 2e 2) Code for processing data and plotting figures are contained within .m files. E.g F2e.m processes F2e_raw.csv to create figure 2e 3) Code for fitting response functions are contained within the linear_response.m (for non-responsive contructs), dose_response.m (for responsive Uni-PsoxS & Activator constructs) & inverse_response.m (for responsive Inverter constructs) 4) Other .m files are functions created by others which were used to process and plot data: i) Rob Campbell (2021). raacampbell/shadedErrorBar (https://github.com/raacampbell/shadedErrorBar), GitHub. Retrieved August 21, 2021. ii) Ameya Deoras (2021). Customizable Heat Maps (https://www.mathworks.com/matlabcentral/fileexchange/24253-customizable-heat-maps), MATLAB Central File Exchange. Retrieved August 21, 2021. iii) Stephen Cobeldick (2021). ColorBrewer: Attractive and Distinctive Colormaps (https://github.com/DrosteEffect/BrewerMap), GitHub. Retrieved August 21, 2021. iv) Martina Callaghan (2021). barwitherr(errors,varargin) (https://www.mathworks.com/matlabcentral/fileexchange/30639-barwitherr-errors-varargin), MATLAB Central File Exchange. Retrieved August 21, 2021. %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% Within the "DNA" folder can be found all the annotated plasmid maps of plasmids used in the study %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% For any support please email jml203@cam.ac.uk %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
DOI: 10.60797/irj.2024.150.10.10
title: Частота манифестации полиорганной дисфункции в группах

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.60797/irj.2024.150.10.11
title: Зависимость между способом декомпрессии и ПОД

description: Международный научно-исследовательский журнал, Выпуск 12 (150) 2024
DOI: 10.15468/dl.pssuuw
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isachne lutchuensis Hatus. & T.Koyama"
 ]
}

 The dataset includes 18 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254786-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jmynra
title: Occurrence Download

description: A dataset containing 4394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sitta whiteheadi Sharpe, 1884)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 29.93667",
 "DecimalLatitude is less than or equal to 51.91193",
 "DecimalLongitude is greater than or equal to -14.67522",
 "DecimalLongitude is less than or equal to 39.79752",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation)",
 "Year is greater than or equal to 1970",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4394 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044051-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arvhsj
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens peperomioides H.Perrier"
 ]
}

 The dataset includes 30 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252619-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sxtckb
title: Occurrence Download

description: A dataset containing 53 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solms-laubachia retropilosa Botsch."
 ]
}

 The dataset includes 53 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064873-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxu87v
title: Occurrence Download

description: A dataset containing 1303 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isachne mauritiana Kunth"
 ]
}

 The dataset includes 1303 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254787-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e3wv8j
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aloe longibracteata Pole-Evans"
 ]
}

 The dataset includes 138 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021571-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u468j5
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liquidambar orientalis Mill.",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Year 1990-2020"
 ]
}

 The dataset includes 60 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252623-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hscydn
title: Occurrence Download

description: A dataset containing 84 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solms-laubachia stewartii (T.Anderson) J.P.Yue, Al-Shehbaz & H.Sun"
 ]
}

 The dataset includes 84 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064874-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7bud78
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens digitata Warb."
 ]
}

 The dataset includes 64 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252624-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfx6ph
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isachne muscicola A.Camus"
 ]
}

 The dataset includes 136 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254791-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evnsgc
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muhlenbergia himalayensis Hack. ex Hook.f."
 ]
}

 The dataset includes 60 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044055-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e8fs3g
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solms-laubachia himalayensis (Cambess.) J.P.Yue, Al-Shehbaz & H.Sun"
 ]
}

 The dataset includes 289 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064857-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7fbx4
title: Occurrence Download

description: A dataset containing 283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepus flavigularis Wagner, 1844",
 "Year 2000-2023"
 ]
}

 The dataset includes 283 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254788-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkw4vd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Colección de Tejidos del Instituto de Investigación de Recursos Biológicos Alexander von Humboldt (IAvH-CT)",
 "TaxonKey is Ctenus nigritus F.O.Pickard-Cambridge, 1897"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0252635-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.umtu94
title: Occurrence Download

description: A dataset containing 297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Luziola fluitans (Michx.) Terrell & H.Rob.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 297 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069936-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.