cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7743155
title: LBP reduces theinflammatory injuryof kidney in septic rat and regulates the Keap1-Nrf2∕ARE signaling pathway

description: Abstract Purpose: To investigate the influence of lycium barbarum polysaccharides (LBP), a functional derivative from lycium barbarum, on septic kidney injury. Methods: The SD male rats were randomly divided into 8 groups. The concentration of IL-1β, IL-6, IL-8, TNF-α, NF-κB and ROS, in kidney cortex homogenates after 12 h treatments were determined by enzyme-linked immunosorbent assay and ROS test kit, respectively. Morphology observation of kidney tissue was conducted with HE staining. The mRNA and protein expression levels of Nrf2, HO-1, NQO1, NF-κB, and Keap1 in kidney tissues were determined by qRT-PCR and Western blot, respectively. Results: LPS treatment significantly increased the oxidative stress. After LBP treatment, the ROS content reduced significantly in a dose-depend manner. However, the levels of HO-1, NQO1 and Nrf2 as molecular elements that respond to oxidative stress were further increased. Also, administration of LBP increased the levels of NF-κB and Keap1, and decreased the levels of Nrf2 in the Keap 1-Nrf2∕ARE signaling pathway. By administrating the brusatol, the inhibition of Nrf2 enhanced the expression of NF-κB, inhibits the antioxidant responses, and further reverse the protective effect of LBP on the LPS induced septic kidney injury. Conclusion: Lycium barbarum polysaccharides can reduce inflammation and activate the antioxidant responses via regulating the level of pro-inflammatory cytokines and the Keap1-Nrf2/ARE signaling pathway.
DOI: 10.6084/m9.figshare.7743155.v1
title: LBP reduces theinflammatory injuryof kidney in septic rat and regulates the Keap1-Nrf2∕ARE signaling pathway

description: Abstract Purpose: To investigate the influence of lycium barbarum polysaccharides (LBP), a functional derivative from lycium barbarum, on septic kidney injury. Methods: The SD male rats were randomly divided into 8 groups. The concentration of IL-1β, IL-6, IL-8, TNF-α, NF-κB and ROS, in kidney cortex homogenates after 12 h treatments were determined by enzyme-linked immunosorbent assay and ROS test kit, respectively. Morphology observation of kidney tissue was conducted with HE staining. The mRNA and protein expression levels of Nrf2, HO-1, NQO1, NF-κB, and Keap1 in kidney tissues were determined by qRT-PCR and Western blot, respectively. Results: LPS treatment significantly increased the oxidative stress. After LBP treatment, the ROS content reduced significantly in a dose-depend manner. However, the levels of HO-1, NQO1 and Nrf2 as molecular elements that respond to oxidative stress were further increased. Also, administration of LBP increased the levels of NF-κB and Keap1, and decreased the levels of Nrf2 in the Keap 1-Nrf2∕ARE signaling pathway. By administrating the brusatol, the inhibition of Nrf2 enhanced the expression of NF-κB, inhibits the antioxidant responses, and further reverse the protective effect of LBP on the LPS induced septic kidney injury. Conclusion: Lycium barbarum polysaccharides can reduce inflammation and activate the antioxidant responses via regulating the level of pro-inflammatory cytokines and the Keap1-Nrf2/ARE signaling pathway.
DOI: 10.17909/w0ev-4241
title: IUE data 78 Vir
DOI: 10.5281/zenodo.10688206
title: Dataset related to article: FREQUENCY, ENTITY AND DETERMINANTS OF FATIGUE IN CHARCOT-MARIE-TOOTH DISEASE

description: data on fatigue in cmt using mfis questionnaire
DOI: 10.5281/zenodo.10688207
title: Dataset related to article: FREQUENCY, ENTITY AND DETERMINANTS OF FATIGUE IN CHARCOT-MARIE-TOOTH DISEASE

description: data on fatigue in cmt using mfis questionnaire
DOI: 10.5285/88b969c2540e4d558c2896fb5b8ef613
title: ACSIS: UKESM1 simulations for the North Atlantic Climate System Integrated Study

description: Three UK Earth Sysyem Model (UKESM1) hindcasts have been performed in support of the North Atlantic Climate System Integrated Study (ACSIS). 

Data is provided as raw model output in Met Office PP (32-bit) format that can be read by the Iris (https://scitools-iris.readthedocs.io/en/stable/) or cf-python (https://ncas-cms.github.io/cf-python/) libraries.

This is global data at N96eL85 resolution (1.875 x 1.25, 85 model levels up to 85km). Simulations were performed on the Monsoon2 High Performance Computer (HPC).

The following fields are contained in the dataset: O3, NO, NO2, CO, CH4, 4x Stratospheric O3 tracers, and 30x idealised tracers emitted from various locations (15 with a 5-day e-folding lifetime, and 15 with a 30-day e-folding lifetime). Data is provided in mass mixing ratio (kg species/kg air).
DOI: 10.12761/w2c1-x551
title: Digital Collectomics Example SIP Jena applied ML

description: This dataset contains a selection of 100 herbarium scans (low-resolution) from the Herbarium Haussknecht, provided by Senckenberg Institute for Plant Form and Function (SIP), Jena. The images have been processed with the machine learning tool (convolutional neural network) for plant organ detection by Younis et al. 2020, see doi.org:10.48550/arXiv.2007.13106 The dataset consists of two files according to the RO-Crate specification (https://www.researchobject.org/ro-crate/1.1/).

    derived-images-and-annotations-lowres.zip: A full RO-Crate which contains both the detected plant organ annotations in a machine-readable form as part of the ro-crate-metadata.json and low-res images of the herbarium scans themselves where the detected bounding boxes are visualized
    annotations-highres.json: A pure RO-Crate metadata JSON-LD file which contains the detected annotations in reference to the original, high-resolution scans (which are referenced via their web URL)

The annotations consist of the following 6 different classes (mapped to terms from controlled vocabulary):

    leaf -> http://purl.obolibrary.org/obo/FLOPO_0000004
    flower -> http://purl.obolibrary.org/obo/FLOPO_0000122
    fruit -> http://purl.obolibrary.org/obo/FLOPO_0000030
    seed -> http://purl.obolibrary.org/obo/FLOPO_0000074
    stem -> http://purl.obolibrary.org/obo/FLOPO_0000001
    root -> http://purl.obolibrary.org/obo/FLOPO_0000039
DOI: 10.6084/m9.figshare.7743191
title: Quantum Chemical Investigation of the Intramolecular Copigmentation Complex of an Acylated Anthocyanin

description: Anthocyanins are the natural plant pigments responsible for most of the red, blue and purple colors of flowers and fruit. One method of stabilization of the color of anthocyanins in nature is intramolecular copigmentation, in which a copigment molecule covalently attached to one of the sugar residues complexes with the anthocyanin cation chromophore. In the present work, two quantum chemical methodologies, time-dependent density functional theory (TD-DFT) and second.order algebraic diagrammatic construction (ADC(2)), were employed to predict the absorption spectra in vacuum and conductor-like screening model (COSMO) water of a natural anthocyanin containing an ester of coumaric acid (copigment) bound to the sugar residue of a cyanidin chromophore. ADC(2) in water adequately reproduces the experimental spectra with and without intramolecular copigmentation, pointing to this theoretical technique as a promising approach for predicting the spectroscopic properties of natural (and nature-inspired) dyes and pigments.
DOI: 10.6084/m9.figshare.7743191.v1
title: Quantum Chemical Investigation of the Intramolecular Copigmentation Complex of an Acylated Anthocyanin

description: Anthocyanins are the natural plant pigments responsible for most of the red, blue and purple colors of flowers and fruit. One method of stabilization of the color of anthocyanins in nature is intramolecular copigmentation, in which a copigment molecule covalently attached to one of the sugar residues complexes with the anthocyanin cation chromophore. In the present work, two quantum chemical methodologies, time-dependent density functional theory (TD-DFT) and second.order algebraic diagrammatic construction (ADC(2)), were employed to predict the absorption spectra in vacuum and conductor-like screening model (COSMO) water of a natural anthocyanin containing an ester of coumaric acid (copigment) bound to the sugar residue of a cyanidin chromophore. ADC(2) in water adequately reproduces the experimental spectra with and without intramolecular copigmentation, pointing to this theoretical technique as a promising approach for predicting the spectroscopic properties of natural (and nature-inspired) dyes and pigments.
DOI: 10.4121/7efaa0cf-e0ba-4b57-b7dc-dba6492a0633
title: Data underlying the publication: Small concentrations of NaCl help building stable inhibiting layers from 2,5-dimercapto-1,3,4-thiadiazole (DMTD) on AA2024-T3

description: This dataset includes the raw data and processed data related to the paper "Small concentrations of NaCl help building stable inhibiting layers from 2,5-dimercapto-1,3,4-thiadiazole (DMTD) on AA2024-T3". doi:10.1016/j.corsci.2023.111562. This research aims to understand the interaction of an organic inhibitor: DMTD with the AA2024-T3 and the stability of inhibiting layers. This is a fundamental study on the corrosion inhibitor for AA2024-T3. The method of data collection includes in-situ electrochemical potential noise correlated with optical images, SEM, XPS, and Raman spectroscopy. The data were exported from the set-up as TXT/EXCEl/PNG/JPG/TIFF/WORD file. The plots are processed in Origin and saved as OPJU and PNG.
DOI: 10.4121/7efaa0cf-e0ba-4b57-b7dc-dba6492a0633.v2
title: Data underlying the publication: Small concentrations of NaCl help building stable inhibiting layers from 2,5-dimercapto-1,3,4-thiadiazole (DMTD) on AA2024-T3

description: This dataset includes the raw data and processed data related to the paper "Small concentrations of NaCl help building stable inhibiting layers from 2,5-dimercapto-1,3,4-thiadiazole (DMTD) on AA2024-T3". doi:10.1016/j.corsci.2023.111562. This research aims to understand the interaction of an organic inhibitor: DMTD with the AA2024-T3 and the stability of inhibiting layers. This is a fundamental study on the corrosion inhibitor for AA2024-T3. The method of data collection includes in-situ electrochemical potential noise correlated with optical images, SEM, XPS, and Raman spectroscopy. The data were exported from the set-up as TXT/EXCEl/PNG/JPG/TIFF/WORD file. The plots are processed in Origin and saved as OPJU and PNG.
DOI: 10.5281/zenodo.10370348
title: Insights in the structural hierarchy of statically crystallized palm oil

description: This dataset contains all data obtained on palm oil samples and used in the publication "Insights in the structural hierarchy of statically crystallized palm oil". See paper for more information on the methods for obtaining the data.

 

Abbreviations used:

PO = palm oil

PPP = tripalmitin

I = intensity (in X-ray scattering)

q = scattering vector (in X-ray scattering)

SEM = Scanning Electron Microscopy

DSC = Differential Scanning Calorimetry

WAXS = Wide Angle X-ray Scattering

SAXS = Small Angle X-ray Scattering

USAXS = Ultra Small Angle X-ray Scattering

PLM = Polarized Light Microscopy

FC = fast cooling = 20°C/min

SC = slow cooling = 1°C/min

TAG = triglyceride

FA = fatty acid
DOI: 10.5281/zenodo.10370349
title: Insights in the structural hierarchy of statically crystallized palm oil

description: This dataset contains all data obtained on palm oil samples and used in the publication "Insights in the structural hierarchy of statically crystallized palm oil". See paper for more information on the methods for obtaining the data.

 

Abbreviations used:

PO = palm oil

PPP = tripalmitin

I = intensity (in X-ray scattering)

q = scattering vector (in X-ray scattering)

SEM = Scanning Electron Microscopy

DSC = Differential Scanning Calorimetry

WAXS = Wide Angle X-ray Scattering

SAXS = Small Angle X-ray Scattering

USAXS = Ultra Small Angle X-ray Scattering

PLM = Polarized Light Microscopy

FC = fast cooling = 20°C/min

SC = slow cooling = 1°C/min

TAG = triglyceride

FA = fatty acid
DOI: 10.6084/m9.figshare.25250011
title: <b>Nod-like Receptor Protein 3 Inflammasome Regulates Doxorubicin-Induced Cardiotoxicity Mediated by Gut Microbiota</b>

description: <b>NLRP3</b><b>炎症小体调控肠道菌群介导阿霉素心脏毒性作用</b>
DOI: 10.6084/m9.figshare.25250011.v1
title: <b>Nod-like Receptor Protein 3 Inflammasome Regulates Doxorubicin-Induced Cardiotoxicity Mediated by Gut Microbiota</b>

description: <b>NLRP3</b><b>炎症小体调控肠道菌群介导阿霉素心脏毒性作用</b>
DOI: 10.6084/m9.figshare.11937540
title: Additional file 10 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 10: Supplementary Table 2. The number and proportion of mapped 21- and 24-PHAS with scores greater than 30 for the AA, AABB and DD genomes.
DOI: 10.6084/m9.figshare.11937540.v1
title: Additional file 10 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 10: Supplementary Table 2. The number and proportion of mapped 21- and 24-PHAS with scores greater than 30 for the AA, AABB and DD genomes.
DOI: 10.34740/kaggle/dsv/7655908
title: COVID-19 & the virus that causes it: SARS-CoV-2.
DOI: 10.34658/rdb.a268qk/paydyv
title: routetochaos.tiff

description: :unav
DOI: 10.21942/uva.25244491
title: TCID50 Raw data: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease

description: TCID50 raw data corresponding to article: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease
DOI: 10.21942/uva.25244491.v1
title: TCID50 Raw data: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease

description: TCID50 raw data corresponding to article: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease
DOI: 10.6084/m9.figshare.11937558
title: Additional file 13 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 13: Supplementary Table 5. The predicted targets in FHM with scores less than four, as determined by the Targetfinder program.
DOI: 10.6084/m9.figshare.11937558.v1
title: Additional file 13 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 13: Supplementary Table 5. The predicted targets in FHM with scores less than four, as determined by the Targetfinder program.
DOI: 10.21942/uva.25244521
title: qPCR raw data: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease

description: qPCR raw data corresponding to article: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease
DOI: 10.21942/uva.25244521.v1
title: qPCR raw data: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease

description: qPCR raw data corresponding to article: Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurological disease
DOI: 10.21227/8xhk-dv15
title: Different grasp-type handles for lambda.6

description: This dataset contains the 3D data of nine different grasp type handles that were developed specifically to investigate the influence of the telemanipulator handle on surgical teleoperation tasks with a customized, six degrees of freedom, handleless lambda.6 haptic device (Force Dimension, Nyon, Switzerland). Each of these handles is designed to be grasped with a different grasp type: power disk, quadpod, power sphere, tripod, precision disk, parallel extension, fixed hook, writing tripod, and adducted thumb.This dataset belongs to the following IEEE manuscript: https://doi.org/10.1109/WHC.2019.8816080
DOI: 10.21942/uva.21982610
title: Raw data immune response. Parechovirus A infection induces genotype-specific immune responses in human brain organoids

description: Raw data immune response. Parechovirus A infection induces genotype-specific immune responses in human brain organoids
DOI: 10.21942/uva.21982610.v1
title: Raw data immune response. Parechovirus infection in human brain organoids: host innate inflammatory response and not neuro-infectivity correlates to neurologic disease

description: Raw data immune response. Parechovirus A infection induces genotype-specific immune responses in human brain organoids
DOI: 10.14473/csda/icjgda/87ab8l
title: TI_CHPS104, 105, 204, 205, 304, 305.pdf

description: Technical information
DOI: 10.6084/m9.figshare.11937564.v1
title: Additional file 14 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 14: Supplementary Table 6. The predicted targets in MIT with scores less than four, as determined by the Targetfinder program.
DOI: 10.6084/m9.figshare.11937582
title: Additional file 17 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 17: Supplementary Table 9. The target cleavage information in AM (control: SRR3690678) from the degradome datasets.
DOI: 10.6084/m9.figshare.11937582.v1
title: Additional file 17 of Evolution of PHAS loci in the young spike of Allohexaploid wheat

description: Additional file 17: Supplementary Table 9. The target cleavage information in AM (control: SRR3690678) from the degradome datasets.
DOI: 10.6084/m9.figshare.25259873
title: Structural evolution of the reactivated Møre-Trøndelag Fault Complex, Fosen Peninsula, Norway

description: MTFC datasets.
DOI: 10.34658/rdb.a268qk/n0i0pw
title: routetochaos.tiff

description: :unav
DOI: 10.34658/rdb.a268qk/cdqcvi
title: 1.1phase_space_compar.tiff

description: :unav
DOI: 10.34658/rdb.a268qk/jiiae4
title: 3.4phase_space_compar.tiff

description: :unav
DOI: 10.34658/rdb.a268qk/caz0xr
title: Presentation_paper_138.mp4

description: :unav
DOI: 10.34658/rdb.a268qk/u6qk6y
title: model fizyczny.tiff

description: :unav
DOI: 10.34658/rdb.a268qk/rrn4fv
title: ft1.tiff

description: :unav
DOI: 10.6084/m9.figshare.25259894
title: Table S1: U–Pb geochronology and microstructural analysis of apatite within a Proterozoic crustal-scale shear zone, Outer Hebrides, NW Scotland

description: Table S1. U–Pb isotopic data.
DOI: 10.6084/m9.figshare.25259885
title: Table S2: U–Pb geochronology and microstructural analysis of apatite within a Proterozoic crustal-scale shear zone, Outer Hebrides, NW Scotland

description: Table S2. Trace element data.
DOI: 10.6084/m9.figshare.25259885.v1
title: Table S2: U–Pb geochronology and microstructural analysis of apatite within a Proterozoic crustal-scale shear zone, Outer Hebrides, NW Scotland

description: Table S2. Trace element data.
DOI: 10.6084/m9.figshare.14559056
title: Additional file 2 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 2.
DOI: 10.6084/m9.figshare.14559056.v1
title: Additional file 2 of Tributyltin perturbs femoral cortical architecture and polar moment of inertia in rat

description: Additional file 2.
DOI: 10.5281/zenodo.7477060
title: Test-Retest Reliability of the Human Connectome: An OPM-MEG study

description: OPM-MEG data was acquired during naturalistic viewing of a 600s clip from the film "Dog Day Afternoon".


Two sets of MEG data were acquired in each of the 10 scanned subjects.


Defaced, T1 weighted MRIs are available for each subject and OPM sensor locations and orientations are given relative to subject anatomy to allow for source reconstruction.


An example of MATLAB code used to analyse these data can be found on GitHub, which includes all code used to produce the results described in "Test-Retest Reliability of the Human Connectome: An OPM-MEG study" (biorxiv.org/cgi/content/short/2022.12.21.521184v1)
______________________________________________________________
Updates:
v1.0.1
Added missing meshes and AAL source location files


v1.1.0
Added video file used in the experiment
description: This work was supported by an Engineering and Physical Sciences Research Council (EPSRC) Healthcare Impact Partnership Grant (EP/V047264/1) and an Innovate UK germinator award (Grant number 1003346). We acknowledge support from the UK Quantum Technology Hub in Sensing and Timing, funded by EPSRC (EP/T001046/1). Sensor development was made possible by funding from the National Institutes of Health (R44MH110288). S.M. is funded by Deutsche Forschungsgemeinschaft (DFG), project 437219953. We also express thanks to Cerca Magnetics Ltd., Metamorphic AM and Added Scientific Ltd. for the useful and productive discussions that led to the design of the lightweight helmet used for paediatric measurements.
DOI: 10.5281/zenodo.7477061
title: Test-Retest Reliability of the Human Connectome: An OPM-MEG study

description: OPM-MEG data was acquired during naturalistic viewing of a 600s clip from the film "Dog Day Afternoon". Two sets of MEG data were acquired in each of the 10 scanned subjects. Defaced, T1 weighted MRIs are available for each subject and OPM sensor locations and orientations are given relative to subject anatomy to allow for source reconstruction. An example of MATLAB code used to analyse these data can be found on GitHub, which includes all code used to produce the results described in "Test-Retest Reliability of the Human Connectome: An OPM-MEG study" (biorxiv.org/cgi/content/short/2022.12.21.521184v1)
description: This work was supported by an Engineering and Physical Sciences Research Council (EPSRC) Healthcare Impact Partnership Grant (EP/V047264/1) and an Innovate UK germinator award (Grant number 1003346). We acknowledge support from the UK Quantum Technology Hub in Sensing and Timing, funded by EPSRC (EP/T001046/1). Sensor development was made possible by funding from the National Institutes of Health (R44MH110288). S.M. is funded by Deutsche Forschungsgemeinschaft (DFG), project 437219953. We also express thanks to Cerca Magnetics Ltd., Metamorphic AM and Added Scientific Ltd. for the useful and productive discussions that led to the design of the lightweight helmet used for paediatric measurements.
DOI: 10.5281/zenodo.7503275
title: Test-Retest Reliability of the Human Connectome: An OPM-MEG study

description: OPM-MEG data was acquired during naturalistic viewing of a 600s clip from the film "Dog Day Afternoon". Two sets of MEG data were acquired in each of the 10 scanned subjects. Defaced, T1 weighted MRIs are available for each subject and OPM sensor locations and orientations are given relative to subject anatomy to allow for source reconstruction. An example of MATLAB code used to analyse these data can be found on GitHub, which includes all code used to produce the results described in "Test-Retest Reliability of the Human Connectome: An OPM-MEG study" (biorxiv.org/cgi/content/short/2022.12.21.521184v1)<br> ______________________________________________________________<br> Updates:<br> v1.0.1<br> Added missing meshes and AAL source location files
description: This work was supported by an Engineering and Physical Sciences Research Council (EPSRC) Healthcare Impact Partnership Grant (EP/V047264/1) and an Innovate UK germinator award (Grant number 1003346). We acknowledge support from the UK Quantum Technology Hub in Sensing and Timing, funded by EPSRC (EP/T001046/1). Sensor development was made possible by funding from the National Institutes of Health (R44MH110288). S.M. is funded by Deutsche Forschungsgemeinschaft (DFG), project 437219953. We also express thanks to Cerca Magnetics Ltd., Metamorphic AM and Added Scientific Ltd. for the useful and productive discussions that led to the design of the lightweight helmet used for paediatric measurements.