cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.h9w0vt4rs
title: Movement decisions driving metapopulation connectivity respond to social resources in a long-lived ungulate, bighorn sheep (Ovis canadensis)

description: The spatial availability of social resources is speculated to structure
 animal movement decisions, but the effects of social resources on animal
 movements are difficult to identify because social resources are rarely
 measured. Here, we assessed whether varying availability of a key social
 resource—access to receptive mates—produces predictable changes in
 movement decisions among bighorn sheep in the US state of Nevada. We
 compared the probability that males made long-distance ‘foray’ movements,
 a critical driver of connectivity, across three ecoregions with varying
 temporal duration of a socially mediated factor, breeding season. We used
 a hidden Markov model to identify foray events and then quantified the
 effects of social covariates on the probability of foray using a discrete
 choice model. We found that males engaged in forays at higher rates when
 the breeding season was short, suggesting that males were most responsive
 to the social resource when its existence was short lived. During the
 breeding season, males altered their response to social covariates,
 relative to the non-breeding season, though patterns varied, and age was
 associated with increased foray probability. Our results suggest that
 animals respond to the temporal availability of social resources when
 making the long-distance movements that drive connectivity. This article
 is part of the theme issue ‘The spatial–social interface: A theoretical
 and empirical integration’.
description: # Movement decisions driving metapopulation connectivity respond to social
 resources in a long-lived ungulate, bighorn sheep (Ovis canadensis)
 [https://doi.org/10.5061/dryad.h9w0vt4rs](https://doi.org/10.5061/dryad.h9w0vt4rs) ## Description of the data and file structure BHS_HMM_GPS_cleaned.csv contains cleaned GPS data BHS_HMM_sheep_covs.csv contains yearly sheep-level data BHS_HMM_pop_covs.csv contains yearly population-level data ### Files and variables #### File: BHS\_HMM\_sheep\_covs.csv **Description:** yearly sheep-level data ##### Variables * sheep: sheep ID * ecoregion: ecoregion name * population: population ID * start_date: start date for yearly data * age: yearly age (NA = unkown) #### File: BHS\_HMM\_GPS\_cleaned.csv **Description:** cleaned GPS data ##### Variables * ecoregion: ecoregion name * sheep: sheep ID * burst: sheep ID burst split by &gt; 36 hrs of missing GPS data  * time: date and time * x: x coordinate (UTM zone 11N) * y: y coordinate (UTM zone 11N) #### File: BHS\_HMM\_pop\_covs.csv **Description:** yearly population-level data ##### Variables * population: population ID * ecoregion: ecoregion name * start_date: start date for yearly data * ewes_per_ram: yearly ewe : ram ratio (NA = unknown) * n_ewes: yearly number of ewes (NA = unknown) ## Code/software Code is available on Github (https://github.com/riccile/BHS_HMM).
DOI: 10.5517/ccdc.csd.cc2f5ysc
title: CCDC 2240053: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5ytd
title: CCDC 2240054: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2flztv
title: CCDC 2252578: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lcgq5
title: CCDC 2394307: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f5yq9
title: CCDC 2240051: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2lcmsd
title: CCDC 2394464: Experimental Crystal Structure Determination

description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|Mater.Sci.Eng.,B|166|101074|doi:10.1016/j.mser.2025.101074
description: Related Article: Guang-Rui Si, Xiang-Jing Kong, Tao He, Lin-Hua Xie, Michael J. Zaworotko, Jian-Rong Li|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.18112/openneuro.ds007262.v1.0.3
title: Cognitive Workload 8 categories of mental arithmetic
DOI: 10.5061/dryad.q573n5trg
title: Data from: Rapid radiation of a plant lineage sheds light on the assembly of dry valley biomes

description: Southwest China is characterized by high plateaus, large mountain
 systems, and deeply incised dry valleys formed by major rivers and their
 tributaries. Despite the considerable attention given to alpine plant
 radiations in this region, the timing and mode of the diversification of
 the numerous plant lineages in the dry valley habitat remains unknown. To
 address this knowledge gap, we investigate the macroevolution of Isodon
 (Lamiaceae), a lineage commonly distributed in the dry valleys in
 southwest China and wetter areas of Asia and Africa. We reconstructed a
 robust phylogeny encompassing nearly 90% of the approximately 140 extant
 Isodon species using transcriptome and genome-resequencing data. Our
 results suggest a rapid radiation of Isodon during the Pliocene that
 coincided with a habit shift from herbs to shrubs and a habitat shift from
 humid areas to dry valleys. The shrubby growth form likely acted as a
 preadaptation allowing for the movement of Isodon species into these
 valleys. Ecological analysis highlighted aridity and precipitation as key
 factors influencing the niche preferences of different growth forms and
 species richness of Isodon. Integrating our results with insights from
 tectonic movements in the Tibetan Plateau and adjacent regions, we infer
 that the interplay between topography and the evolution of the East Asian
 monsoon since the middle Miocene likely contributed to the formation of
 the dry valley biome in southwest China. This study enhances our
 understanding of evolutionary dynamics and ecological drivers shaping the
 distinctive flora of this region.
description: # Rapid radiation of a plant lineage sheds light on the assembly of dry
 valley biomes
 [https://doi.org/10.5061/dryad.q573n5trg](https://doi.org/10.5061/dryad.q573n5trg) The files include the dataset matrix and treefiles from transcriptome and genome resequencing data for Isodon species, as well as the R scripts for downstream analyses. ## Description of the data and file structure * concatenate_matrices.phy: the concatenated matrix of 7204 low-copy nuclear genes. * concatenate_matrices.phy.treefile: the maximum-likelihood tree of Isodon estimated using the concatenation method of IQ-TREE based on the dataset of 7,204 low-copy nuclear genes. * single_gene_trees.zip: the single gene trees for 7,204 low-copy nuclear genes. * Isodon-BS10.tre:  the species tree of *Isodon* estimated using the coalescent method of ASTRAL based on the single gene trees inferred from 7,204 low-copy nuclear genes. ## Code/Software * scripts.zip: the R scripts used for downstream analyses.
DOI: 10.15468/dl.w973m7
title: Occurrence Download

description: A dataset containing 1500 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neptis clinia"
 ]
}

 The dataset includes 1500 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003996-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.2jm63xsxt
title: R code for differential gene expression and enrichment analyses

description: The information about the magnitude of differences in thermal plasticity
 both between and within populations, as well as identification of the
 underlying molecular mechanisms are key to understanding the evolution of
 thermal plasticity. In particular, genes underlying variation in the
 physiological response to temperature can provide raw material for
 selection acting on plastic traits. Using RNAseq, we investigate the
 transcriptional response to temperature in males and females from bulb
 mite populations selected for the increased frequency of one of two
 discrete male morphs (fighter- and scrambler-selected populations) that
 differ in relative fitness depending on temperature. We show that
 different mechanisms underlie the divergence in thermal response between
 fighter- and scrambler-selected populations at decreased vs. increased
 temperatures. Temperature decrease to 18°C was associated with higher
 transcriptomic plasticity of males with more elaborate armaments, as
 indicated by a significant selection-by-temperature interaction effect on
 the expression of 40 genes, 38 of which were upregulated in
 fighter-selected populations in response to temperature decrease. In
 response to 28°C, no selection-by-temperature interaction in gene
 expression was detected. Hence, differences in phenotypic response to
 temperature increase likely depended on genes associated with their
 distinct morph-specific thermal tolerance. Selection on males also drove
 gene expression patterns in females. These patterns could be associated
 with temperature-dependent fitness differences between females from
 fighter- vs. scrambler-selected populations reported in previous studies.
 Our study shows that selection for divergent male sexually selected
 morphologies and behaviors has the potential to drive divergence in
 metabolic pathways underlying plastic response to temperature in both
 sexes.
description: The data originate from RNAseq on bulb mite populations selected
 for the increased or decreased frequency of the fighter morph. Gene
 expression was measured in both sexes in mites developing at three
 different temperatures (18, 23, and 28°C).
description: # R code for differential gene expression and enrichment analyses
 [https://doi.org/10.5061/dryad.2jm63xsxt](https://doi.org/10.5061/dryad.2jm63xsxt) This is the code together with input files (raw read counts together with metadata) used to analyse gene expression data.  Description of the metadata file: * S and F in Morph stand for scrambler and fighter-selected population, respectively. * F and M in Sex stand for female and male, respectively. * Temperature is given in degrees Celcius. ## Sharing/Access information Raw sequencing reads for the analyses can be downloaded from: * [http://www.ncbi.nlm.nih.gov/bioproject/868706](http://www.ncbi.nlm.nih.gov/bioproject/868706)
DOI: 10.5281/zenodo.18406434
title: Table 1 in Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species

description: Table 1. Populations of the Paepalanthus trichophyllus complex used in this study, including acronyms, locality information, number of specimens and vouchers or barcodes. Vouchers were deposited in the R herbarium. Abbreviations: BA = Bahia; GO = Goiás; MG = Minas Gerais. * = holotype voucher.
AcronymLocality/coordinates (lat, long)N° of specimensVouchersCANASMG, Serra da Canastra National Park (20°15′18″ S, 46°26′58″ W)7SPF 106131 SPF 109761 SPF 109764 SPF 227046CHAVEfazGO, Chapada dos Veadeiros National Park, Fazenda Água Fria (14°05′39″ S, 47°30′19″ W)16L. E. F. Silva et al. 141 *CHAVEcruGO, Chapada dos Veadeiros National Park, Cruzeiro (14°05′8″ S, 47°32′33″ W)16L. E. F. Silva et al. 145CHAVEestGO, Chapada dos Veadeiros National Park, road Alto Paraíso to Teresina (13°59′15″ S, 47°30′32″ W)15L. E. F. Silva et al. 155PIABA, Piatã (13°03′44″ S, 41°53′02″ W)15W.L. Picanço 561 *ITUMG, Itutinga (21°17′47″ S, 44°42′42″ W)16L. E. F. Silva & I. M. Rollim 178SÃOMG, São João del-Rei (21°7′31″ S, 44°16′28″ W)9L.E.F. Silva & I.M. Rollim 180
description: Published as part of Silva, Lucas Espindola Florêncio da & Trovó, Marcelo, 2026, Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species, pp. 61 in European Journal of Taxonomy 1034 on page 61, DOI: 10.5852/ejt.2026.1034.3161, http://zenodo.org/record/18406276
DOI: 10.5281/zenodo.18406435
title: Table 1 in Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species

description: Table 1. Populations of the Paepalanthus trichophyllus complex used in this study, including acronyms, locality information, number of specimens and vouchers or barcodes. Vouchers were deposited in the R herbarium. Abbreviations: BA = Bahia; GO = Goiás; MG = Minas Gerais. * = holotype voucher.
AcronymLocality/coordinates (lat, long)N° of specimensVouchersCANASMG, Serra da Canastra National Park (20°15′18″ S, 46°26′58″ W)7SPF 106131 SPF 109761 SPF 109764 SPF 227046CHAVEfazGO, Chapada dos Veadeiros National Park, Fazenda Água Fria (14°05′39″ S, 47°30′19″ W)16L. E. F. Silva et al. 141 *CHAVEcruGO, Chapada dos Veadeiros National Park, Cruzeiro (14°05′8″ S, 47°32′33″ W)16L. E. F. Silva et al. 145CHAVEestGO, Chapada dos Veadeiros National Park, road Alto Paraíso to Teresina (13°59′15″ S, 47°30′32″ W)15L. E. F. Silva et al. 155PIABA, Piatã (13°03′44″ S, 41°53′02″ W)15W.L. Picanço 561 *ITUMG, Itutinga (21°17′47″ S, 44°42′42″ W)16L. E. F. Silva & I. M. Rollim 178SÃOMG, São João del-Rei (21°7′31″ S, 44°16′28″ W)9L.E.F. Silva & I.M. Rollim 180
description: Published as part of Silva, Lucas Espindola Florêncio da & Trovó, Marcelo, 2026, Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species, pp. 61 in European Journal of Taxonomy 1034 on page 61, DOI: 10.5852/ejt.2026.1034.3161, http://zenodo.org/record/18406276
DOI: 10.5281/zenodo.18406439
title: Table 2 in Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species

description: Table 2. Comparison of the main vegetative characters used in morphometric analysis for the seven populations of the Paepalanthus trichophyllus complex.
Characters (cm) / populations (acronyms)CANASCHAVEestCHAVEcruzCHAVEfazITUPIASÃOPlant lengthmin.10.3524.4030.3041.3026.5018.8016.65max.20.1050.0070.7065.2056.3540.7028.90average14.8736.3844.2254.0038.5628.2123.94Stem lengthmin.0.804.106.4012.308.705.004.00max.2.0017.0024.2030.5032.6019.206.00average1.518.5614.3221.5217.7910.694.85Leaf of the apical portion length width of the median portionmin.7.0012.008.309.0012.605.0015.70max.14.0023.0019.0016.001911.0023.00average12.2616.9111.7212.0016.157.5019.78min.1.001.800.901.501.200.901.90max.2.005.103.803.503.001.803.00average1.543.282.022.612.061.162.42Leaf of the median portion length width of the median portionmin.7.0010.508.509.009.505.0016.50max.14.0019.5018.0017.0020.59.5023.00average12.2616.0312.3911.7914.947.1118.83min.1.002.101.001.501.300.802.50max.2.005.003.204.503.201.903.20average1.543.142.192.412.191.352.84
description: Published as part of Silva, Lucas Espindola Florêncio da & Trovó, Marcelo, 2026, Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species, pp. 66 in European Journal of Taxonomy 1034 on page 66, DOI: 10.5852/ejt.2026.1034.3161, http://zenodo.org/record/18406276
DOI: 10.5281/zenodo.18406438
title: Table 2 in Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species

description: Table 2. Comparison of the main vegetative characters used in morphometric analysis for the seven populations of the Paepalanthus trichophyllus complex.
Characters (cm) / populations (acronyms)CANASCHAVEestCHAVEcruzCHAVEfazITUPIASÃOPlant lengthmin.10.3524.4030.3041.3026.5018.8016.65max.20.1050.0070.7065.2056.3540.7028.90average14.8736.3844.2254.0038.5628.2123.94Stem lengthmin.0.804.106.4012.308.705.004.00max.2.0017.0024.2030.5032.6019.206.00average1.518.5614.3221.5217.7910.694.85Leaf of the apical portion length width of the median portionmin.7.0012.008.309.0012.605.0015.70max.14.0023.0019.0016.001911.0023.00average12.2616.9111.7212.0016.157.5019.78min.1.001.800.901.501.200.901.90max.2.005.103.803.503.001.803.00average1.543.282.022.612.061.162.42Leaf of the median portion length width of the median portionmin.7.0010.508.509.009.505.0016.50max.14.0019.5018.0017.0020.59.5023.00average12.2616.0312.3911.7914.947.1118.83min.1.002.101.001.501.300.802.50max.2.005.003.204.503.201.903.20average1.543.142.192.412.191.352.84
description: Published as part of Silva, Lucas Espindola Florêncio da & Trovó, Marcelo, 2026, Taxonomic revision of the Paepalanthus trichophyllus complex (Poales, Eriocaulaceae) with the description of two new species, pp. 66 in European Journal of Taxonomy 1034 on page 66, DOI: 10.5852/ejt.2026.1034.3161, http://zenodo.org/record/18406276
DOI: 10.25983/cbi/3014742
title: Figures S1 to S14; Tables S1 to S7.

description: PDF of figures and tables
DOI: 10.15468/dl.m9e7ja
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Brachyhypopomus brevirostris",
 "Year 2018-2026"
 ]
}

 The dataset includes 46 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003997-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.7pvmcvf29
title: Data from: Salinity decline promotes growth and harmful blooms of a toxic alga by diverting carbon flow

description: Global climate change intensifies the water cycle and makes freshest
 waters become fresher and vice‑versa. But how this change impacts
 phytoplankton in coastal, particularly harmful algal blooms (HABs),
 remains poorly understood. Here, we monitored a coastal bay for a decade
 and found a significant correlation between salinity decline and the
 increase of Karenia mikimotoi blooms. To examine the physiological linkage
 between salinity decreases and K. mikimotoi blooms, we compare chemical,
 physiological and multi-omic profiles of this species in laboratory
 cultures under high (33) and low (25) salinities. Under low salinity,
 photosynthetic efficiency and capacity as well as growth rate and cellular
 protein content were significantly higher than that under high salinity.
 More strikingly, the omics data show that low salinity activated the
 glyoxylate shunt to bypass the decarboxylation reaction in the
 tricarboxylic acid cycle, hence redirecting carbon from CO2 release to
 biosynthesis. Furthermore, the enhanced glyoxylate cycle could promote
 hydrogen peroxide metabolism, consistent with the detected decrease in
 reactive oxygen species (ROS). These findings suggest that salinity
 declines can reprogram metabolism to enhance cell proliferation, thus
 promoting bloom formation in HAB species like K. mikimotoi, which has
 important ecological implications for future climate-driven salinity
 declines in the coastal ocean with respect to HAB outbreaks.
description: We tested physiological, biochemical and molecular biological
 performances of Karenia mikimotoi under high salinity (33PSU) and low
 salinity (25PSU).
description: # Salinity decline promotes growth and harmful blooms of a toxic alga by
 diverting carbon flow
 [https://doi.org/10.5061/dryad.7pvmcvf29](https://doi.org/10.5061/dryad.7pvmcvf29) Description of the data and file structure The physiological, biochemical, and molecular biological performances of Karenia mikimotoi under high salinity (33PSU) and low salinity (25PSU). We have four groups for cell concentration assay: 20 PSU, 25 PSU, 33 PSU, and 37 PSU, each in triplicate. The rest measurements have two groups: 25 PSU and 33 PSU, each in triplicate. The results file contains the measurement results of cell concentration (at days 1,5,8,10,12,14 and 16), photosynthetic efficiency (Fv/Fm) (at days 1,5,8,10,12,14 and 16)， CN ratio, cellular protein content, oxidative stress-related enzyme activity and cellular ROS content; Table S1- contains primers used in the study, Table S2-field nutrient data, Table S3-a summary of annotation of unigenes in each database, Table S4-metabolites, Table S5-differential metabolites, Table S6-amino acid composition. Abbreviation: PSU: practical salinity units; C, carbon; N, nitrogen; RbcL：Rubisco large subunit
DOI: 10.25983/cbi/3014741
title: Supplementary material Dataset S1

description: Growth and metabolite quantitation for bacterial cultivations