cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh371399.07fu
title: SH371399.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.13324022
title: Additional file 7 of Whole genome variants across 57 pig breeds enable comprehensive identification of genetic signatures that underlie breed features

description: Additional file 7: Supplementary Data 7. Candidate regions and genes in these regions with KEGG and GO results for body weight.
DOI: 10.6084/m9.figshare.13324013
title: Additional file 4 of Whole genome variants across 57 pig breeds enable comprehensive identification of genetic signatures that underlie breed features

description: Additional file 4: Supplementary Data 4. Candidate regions and genes in these regions with KEGG and GO results for ear shape.
DOI: 10.6084/m9.figshare.13324019
title: Additional file 6 of Whole genome variants across 57 pig breeds enable comprehensive identification of genetic signatures that underlie breed features

description: Additional file 6: Supplementary Data 6. Candidate regions and genes in these regions with KEGG and GO results for body length.
DOI: 10.6084/m9.figshare.13324019.v1
title: Additional file 6 of Whole genome variants across 57 pig breeds enable comprehensive identification of genetic signatures that underlie breed features

description: Additional file 6: Supplementary Data 6. Candidate regions and genes in these regions with KEGG and GO results for body length.
DOI: 10.6084/m9.figshare.13324048.v1
title: Additional file 5 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 5.
DOI: 10.6084/m9.figshare.13324051
title: Additional file 6 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 6.
DOI: 10.6084/m9.figshare.7559573.v1
title: Additional file 10: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Figure S3. The DNB members of flower development in rice. (TXT 9 kb)
DOI: 10.6084/m9.figshare.8081252
title: Additional file 1: of Developmental transcriptomics of Chinese cordyceps reveals gene regulatory network and expression profiles of sexual development-related genes

description: Supporting tables. Table S1. Summary of the sequencing data of Chinese cordyceps transcriptome at different growth stages. Table S2. Shared differentially expressed genes among all the five comparisons between adjacent growth stages. Table S3. GO functional classification of differentially expressed genes. Table S4. KEGG enriched pathway analysis of differentially expressed genes. Table S5. KEGG enriched pathway analysis of genes in blue, turpuoise, yellow, purple and magenta modules. Table S6. Transcription factor in blue, turpuoise, yellow, purple and magenta modules and FPKM analysis. Table S7. Sexual development-related genes functionally verified in Aspergillus nidulans and Neurospora crassa. Table S8. A list of homologous of MAPK-cascaded components and related proteins of Aspergillus nidulans and Neurospora crassa. Table S9. Oligonucleotide primer sequences used in this study. (XLSX 325 kb)
DOI: 10.6084/m9.figshare.13324039
title: Additional file 2 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.13324054.v1
title: Additional file 7 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 7.
DOI: 10.6084/m9.figshare.13324039.v1
title: Additional file 2 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 2.
DOI: 10.6084/m9.figshare.13324054
title: Additional file 7 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 7.
DOI: 10.6084/m9.figshare.13324036
title: Additional file 1 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 1.
DOI: 10.6084/m9.figshare.13324042.v1
title: Additional file 3 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 3.
DOI: 10.6084/m9.figshare.13324036.v1
title: Additional file 1 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 1.
DOI: 10.6084/m9.figshare.13324048
title: Additional file 5 of Nebivolol combined with tetrahydrobiopterin affects diastolic function in spontaneously hypertensive rats via the nitric oxide/cyclic guanosine monophosphate signalling pathway

description: Additional file 5.
DOI: 10.15784/601717
title: Egg diameters of Colossendeis megalonyx

description: Measurements of the longest diameters of 17 eggs of Colossendeis megalonyx, laid on October 25 2021 and photographed on October 27 2021.
DOI: 10.17028/rd.lboro.22761242
title: Supplementary information files for: Cross-linked solid-liquid interfaces enable a fast proton transport in the aluminate heterostructure electrolyte

description: Supplementary files for article Cross-linked solid-liquid interfaces enable a fast proton transport in the aluminate heterostructure electrolyte.
Having a highly-conductive protonic electrolyte is an essential requirement of developing solid ceramic fuel cell (SCFC) operated below 600 °C. Proton transport in solid electrolyte structure occurs via a bulk conduction mechanism in conventional SCFC, which may not be so efficient; therefore we have developed a fast proton conducting NaAlO<sub>2</sub>/LiAlO<sub>2</sub> (NAO-LAO) heterostructure electrolyte, achieving the ionic conductivity of 0.23 S cm<sup>−1</sup> thanks to its rich cross-linked solid-liquid interfaces; the SCFC employing this new developed electrolyte showed a maximum power density of 844 mW cm<sup>−2</sup> at 550 °C, and the fuel cell could still operate at even lower temperatures down to 370 °C, although the output reduced to 90 mW cm<sup>−2</sup>. The proton-hydration liquid layer promoted the formation of cross-linked solid-liquid interfaces in the NAO-LAO electrolyte, which promoted the construction of solid-liquid hybrid proton transportation channels and effectively reduced polarization loss, leading to high proton conduction at even lower temperatures. This work provides an efficient design approach for developing enabling electrolytes with high proton conductivity for SCFCs to be operated at relatively lower temperatures (300−600 °C) than traditional solid oxide fuel cells which operate above 750 °C.
DOI: 10.6084/m9.figshare.7559588
title: Additional file 4: of Genome-wide dynamic network analysis reveals a critical transition state of flower development in Arabidopsis

description: Table S1. Functional categories for the DNB members of Arabidopsis flower development. (TXT 7 kb)
DOI: 10.15784/601716
title: Video of Colossendeis megalonyx behavior around egg mass

description: This video shows the behavior of an adult of Colossendeis megalonyx around a recently-deposited egg mass from a mating group of the same species. The egg mass is indicated by a white circle and label that appears close to the beginning of the video. The adult can be seen manipulating the egg mass with its ovigerous legs (long, with scoop at the end) and palps (shorter). Next to the adult and egg mass are two other Colossendeis in mating posture. The video was taken by Graham Lobert on November 1, 2021 on a GoPro Hero Black at a timelapse rate of one frame per second, played back at 30 fps. The egg mass is approximately three cm across the short diameter.
DOI: 10.6084/m9.figshare.18070787.v1
title: Additional file 1 of A novel graph-based k-partitioning approach improves the detection of gene-gene correlations by single-cell RNA sequencing

description: Additional file 1.
DOI: 10.15129/793370a3-78c2-4308-8c0b-beff4e997ade
title: Data for: "Modelling the evolution of pore structure during the disintegration of pharmaceutical tablets"

description: This study analyses the changes in pore structure during disintegration by coupling the discrete element method (DEM) with a single particle swelling model, and experimental liquid penetration data from terahertz pulsed imaging (TPI). The coupled model is demonstrated and validated for pure microcrystalline cellulose (MCC) tablets across three porosities (10, 15 and 22 %) and MCC with three different concentrations of croscarmellose sodium (CCS) (2, 5 and 8 \%w/w).
DOI: 10.21942/uva.23496923
title: Dataset - Global geodiversity components are not equally represented in UNESCO Global Geoparks

description: This dataset contains: <br> <strong>geodiversity_metrics_geotifs.zip</strong> Geotiff layers of the geodiversity metrics (lithology diversity, soil diversity, slope range, slope standard deviation, lake area and river length). These layers were computed by Hannes Versteegh. <br> <strong>geodiversity_component_total_geodiversity_layers.zip</strong> Geotiff layers of the geodiversity components (lithological, soil, topographical and hydrological diversity) and total geodiversity. These layers were computed by Hannes Versteegh. <br> <strong>scripts_results_analysis_geodiversity_UGGs.zip</strong> 1) the scripts and data used to sample geodiversity metrics and total geodiversity in random polygons (e.g. creating the polygons, and the sampling of the metrics and total geodiversity layers). The random polygons used for the analysis are provided as well as feature classes in a geodatabase (.gdb). Scripts in python, with arcpy module from ESRI's ArcGIS. 2) the results yielded from the zonal statistics calculation for polygons and UGGs 3) the scripts used to import the zonal statistics results to python, and to analyse and visualise the data. The legend of the soil grids dataset is included as well, since this is necessary for the analysis of the soil types.
DOI: 10.6084/m9.figshare.21715966
title: Geochemistry and geochronology of Early Cretaceous lamprophyres of the Sulu Orogenic Belt: implications for lithospheric evolution of Eastern China

description: Lamprophyre is one of the most important probes to understand the enrichment and depletion processes of the lithospheric evolution. Determining the age and petrogenesis of lamprophyres could provide critical data for deducing the timing and process of lithospheric revolution of the Sulu Orogenic Belt (SOB) and North China Craton (NCC). In this study, the Taolin lamprophyre in SOB was delineated by zircon U–Pb dating with the ages of 126 Ma. This lamprophyre is characterized by high contents of SiO<sub>2</sub> and total alkali contents (Na<sub>2</sub>O + K<sub>2</sub>O), low Mg<sup>#</sup> value, low contents of total Fe<sub>2</sub>O<sub>3</sub>, MgO, and compatible elements, enriched in LREE and LILE but strong depleted in HFSE, as well as enriched Sr–Nd and depleted Pb isotope compositions (<sup>87</sup>Sr/<sup>86</sup>Sr<sub>(i)</sub> = 0.707757 to 0.708048, ε<sub>Nd</sub>(t) = – 13.0 to – 12.7, <sup>206</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> ratios of 16.934 to 17.000, <sup>207</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> of 15.435 to 15.442, and <sup>208</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> of 37.682 to 37.706). Interpretations of whole-rock elemental data suggest the Taolin lamprophyre was derived from 1% to 5% partial melting of spinel peridotite; and MELTS modelling indicates fractional crystallization of ~16.7% orthopyroxene and ~16.6% clinopyroxene under 1.5 Gbar. Based on the analyses of Neoproterozoic relic zircons and Sr–Nd–Pb isotopic components of the Taolin lamprophyre and adjacent lamprophyres, we put forwards that there are several subducted crustal materials were trapped into the SOB lithospheric mantle, and the magma source of these lamprophyres might have experienced metasomatic processes not only by the hydrous fluids derived from the subducting Paleo–Pacific oceanic crust in the Jurassic, but also by melts derived from partial melting of the subducting South China continental crust in the Triassic. A geodynamic trigger for generation of the Taolin lamprophyre is proposed to be related to lithospheric thinning coupled with asthenospheric upwelling beneath the North China Craton.
DOI: 10.6084/m9.figshare.21715966.v1
title: Geochemistry and geochronology of Early Cretaceous lamprophyres of the Sulu Orogenic Belt: implications for lithospheric evolution of Eastern China

description: Lamprophyre is one of the most important probes to understand the enrichment and depletion processes of the lithospheric evolution. Determining the age and petrogenesis of lamprophyres could provide critical data for deducing the timing and process of lithospheric revolution of the Sulu Orogenic Belt (SOB) and North China Craton (NCC). In this study, the Taolin lamprophyre in SOB was delineated by zircon U–Pb dating with the ages of 126 Ma. This lamprophyre is characterized by high contents of SiO<sub>2</sub> and total alkali contents (Na<sub>2</sub>O + K<sub>2</sub>O), low Mg<sup>#</sup> value, low contents of total Fe<sub>2</sub>O<sub>3</sub>, MgO, and compatible elements, enriched in LREE and LILE but strong depleted in HFSE, as well as enriched Sr–Nd and depleted Pb isotope compositions (<sup>87</sup>Sr/<sup>86</sup>Sr<sub>(i)</sub> = 0.707757 to 0.708048, ε<sub>Nd</sub>(t) = – 13.0 to – 12.7, <sup>206</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> ratios of 16.934 to 17.000, <sup>207</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> of 15.435 to 15.442, and <sup>208</sup>Pb/<sup>204</sup>Pb<sub>(t)</sub> of 37.682 to 37.706). Interpretations of whole-rock elemental data suggest the Taolin lamprophyre was derived from 1% to 5% partial melting of spinel peridotite; and MELTS modelling indicates fractional crystallization of ~16.7% orthopyroxene and ~16.6% clinopyroxene under 1.5 Gbar. Based on the analyses of Neoproterozoic relic zircons and Sr–Nd–Pb isotopic components of the Taolin lamprophyre and adjacent lamprophyres, we put forwards that there are several subducted crustal materials were trapped into the SOB lithospheric mantle, and the magma source of these lamprophyres might have experienced metasomatic processes not only by the hydrous fluids derived from the subducting Paleo–Pacific oceanic crust in the Jurassic, but also by melts derived from partial melting of the subducting South China continental crust in the Triassic. A geodynamic trigger for generation of the Taolin lamprophyre is proposed to be related to lithospheric thinning coupled with asthenospheric upwelling beneath the North China Craton.
DOI: 10.5281/zenodo.3155802
title: Dataset for genes and gene variants from familial gastroschisis

description: The dataset consists of records from whole exome sequecing and bioinformatic analysis which includes genes and gene variants from a Mexican family with recurrence for gastroschisis (two affected half-sisters with gastroschisis, mother, and father of the proband).

Release of this dataset was based on the Human Genome annotation, GRCh37/hg19.

The full list of tables is described in the file READ ME and remain available in csv files.
description: {"references": ["Chen J et al. ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 2009;37:W305\u2013W311.", "Mi H et al. PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements. Nucleic Acids Res 2017;45:D183\u2013D189.", "Salinas-Torres VM et al. Bioinformatic analysis of gene variants from gastroschisis recurrence identifies multiple novel pathogenetic pathways: implication for the closure of the ventral body wall. Int J Mol Sci 2019;20:2295.", "SNP & Variation Suite \u2122, Version 8x. (2018, August 31). Golden Helix Inc. Retrieved from http://www.goldenhelix.com", "Szklarczyk D et al. The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible. Nucleic Acids Res 2017;45:D362\u2013D368.", "Zerbino DR et al. Ensembl 2018. Nucleic Acids Res 2018;46:D754-D761."]}
DOI: 10.6084/m9.figshare.8081252.v1
title: Additional file 1: of Developmental transcriptomics of Chinese cordyceps reveals gene regulatory network and expression profiles of sexual development-related genes

description: Supporting tables. Table S1. Summary of the sequencing data of Chinese cordyceps transcriptome at different growth stages. Table S2. Shared differentially expressed genes among all the five comparisons between adjacent growth stages. Table S3. GO functional classification of differentially expressed genes. Table S4. KEGG enriched pathway analysis of differentially expressed genes. Table S5. KEGG enriched pathway analysis of genes in blue, turpuoise, yellow, purple and magenta modules. Table S6. Transcription factor in blue, turpuoise, yellow, purple and magenta modules and FPKM analysis. Table S7. Sexual development-related genes functionally verified in Aspergillus nidulans and Neurospora crassa. Table S8. A list of homologous of MAPK-cascaded components and related proteins of Aspergillus nidulans and Neurospora crassa. Table S9. Oligonucleotide primer sequences used in this study. (XLSX 325 kb)
DOI: 10.6084/m9.figshare.16994206
title: Additional file 6 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 6:. Table S5: Differential expression tests between ATRX-wildtype and ATRX-KO cells in an IDH1R132H background from in vivo tumors by cell type, computed via MAST.
DOI: 10.6084/m9.figshare.16994206.v1
title: Additional file 6 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 6:. Table S5: Differential expression tests between ATRX-wildtype and ATRX-KO cells in an IDH1R132H background from in vivo tumors by cell type, computed via MAST.
DOI: 10.6084/m9.figshare.16994194
title: Additional file 2 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 2:. Table S1: Summary of patient and sample molecular characteristics for specimens used in the study.
DOI: 10.6084/m9.figshare.16994209
title: Additional file 7 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 7:. Table S6: Motif enrichment on differential peaks between ATRX-wildtype and ATRX-KO cells in an IDH1R132H background from in vivo tumors by cell type, computed via HOMER.
DOI: 10.6084/m9.figshare.16994209.v1
title: Additional file 7 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 7:. Table S6: Motif enrichment on differential peaks between ATRX-wildtype and ATRX-KO cells in an IDH1R132H background from in vivo tumors by cell type, computed via HOMER.
DOI: 10.6084/m9.figshare.16994200
title: Additional file 4 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 4:. Table S3: Summary of markers used and associated references for Fig. 1E.
DOI: 10.6084/m9.figshare.16994215
title: Additional file 8 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 8:. Table S7: NSC chromatin-loops annotated with genomic coordinates, ATRX-WT/KO differential anti-CTCF scCUT&Tag peaks, loop-averaged ATRX-KO/WT cell-averaged in vivo log fold-change in expression in neoplastic cells represented as a percentage of a data-driven null distribution, and the number of genes on each loop.
DOI: 10.6084/m9.figshare.16994197
title: Additional file 3 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 3:. Table S2: Differential expression tests between IDH-A and IDH-O cells by cell type, computed via limma.
DOI: 10.6084/m9.figshare.16994197.v1
title: Additional file 3 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 3:. Table S2: Differential expression tests between IDH-A and IDH-O cells by cell type, computed via limma.
DOI: 10.6084/m9.figshare.16994194.v1
title: Additional file 2 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 2:. Table S1: Summary of patient and sample molecular characteristics for specimens used in the study.
DOI: 10.6084/m9.figshare.16994200.v1
title: Additional file 4 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 4:. Table S3: Summary of markers used and associated references for Fig. 1E.
DOI: 10.6084/m9.figshare.16994203.v1
title: Additional file 5 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 5:. Table S4: Differentially enriched motifs and motif enrichment on differential peaks, computed via chromVAR and HOMER respectively, between IDH-A and IDH-O cells by cell type.
DOI: 10.6084/m9.figshare.16994203
title: Additional file 5 of ATRX regulates glial identity and the tumor microenvironment in IDH-mutant glioma

description: Additional file 5:. Table S4: Differentially enriched motifs and motif enrichment on differential peaks, computed via chromVAR and HOMER respectively, between IDH-A and IDH-O cells by cell type.
DOI: 10.6084/m9.figshare.19613635
title: Additional file 6 of The burden of aortic aneurysm in China from 1990 to 2019: findings from the Global Burden of Disease Study 2019

description: Additional file 6.
DOI: 10.6084/m9.figshare.19615769
title: Numerical Approach for Kinematic analysis of Unit II from Folding arrays of uniform-thickness panels to compact bundles with a single degree of freedom

description: Description of the numerical approach for the kinematics of unit II.
DOI: 10.6084/m9.figshare.16994225
title: Additional file 1 of Natural hybridization among three Rhododendron species (Ericaceae) revealed by morphological and genomic evidence

description: Additional file 1.
DOI: 10.6084/m9.figshare.12798807.v1
title: Additional file 2 of Protocol for the 3HP Options Trial: a hybrid type 3 implementation-effectiveness randomized trial of delivery strategies for short-course tuberculosis preventive therapy among people living with HIV in Uganda

description: Additional file 2. PRECIS-2 scores for 3HP Options Trial domains