cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26587566.v1
title: Additional file 2 of Transcriptomic analysis of cave, surface, and hybrid samples of the isopod Asellus aquaticus and identification of chromosomal location of candidate genes for cave phenotype evolution

description: Additional file 2: Supplementary File 1: Late-stage differential expression, CAVE_rr vs SURF_rs reads, mapped both to CAVE_rr and SURF_rs assemblies. Supplementary File 2: Mid-stage differential expression, CAVE_rr vs SURF_rs reads, mapped both to CAVE_rr and SURF_rs assemblies. Supplementary File 3: Allele-specific expression, surface-biased, within F1 hybrids between CAVE_rr and SURF_rs populations. Supplementary File 4: Allele-specific expression, cave-biased, within F1 hybrids between CAVE_rr and SURF_rs populations. Supplementary File 5: Allele-specific expression using allele counting for three F1 hybrid samples. Supplementary File 6: Genes linked to regions responsible for orange pigment, no pigment, and eye loss.
DOI: 10.5281/zenodo.13312632
title: FORMATION OF MODERN SKILLS IN PRIMARY EDUCATION STUDENTS ON THE BASIS OF INTERNATIONAL ASSESSMENT PROGRAMS AS AN IMPORTANT PEDAGOGICAL PROBLEM
DOI: 10.5281/zenodo.13312633
title: FORMATION OF MODERN SKILLS IN PRIMARY EDUCATION STUDENTS ON THE BASIS OF INTERNATIONAL ASSESSMENT PROGRAMS AS AN IMPORTANT PEDAGOGICAL PROBLEM
DOI: 10.6084/m9.figshare.26641951
title: Additional file 2 of Ly6C-high monocytes alleviate brain injury in experimental subarachnoid hemorrhage in mice

description: Additional file 2: RNA-seq data obtained in this study.
DOI: 10.6084/m9.figshare.26641951.v1
title: Additional file 2 of Ly6C-high monocytes alleviate brain injury in experimental subarachnoid hemorrhage in mice

description: Additional file 2: RNA-seq data obtained in this study.
DOI: 10.6084/m9.figshare.26641975
title: Additional file 1 of Assessing the interactions of people and policy-makers in social participation for health: an inventory of participatory governance measures from a rapid systematic literature review

description: Additional file 1.
DOI: 10.6084/m9.figshare.26641975.v1
title: Additional file 1 of Assessing the interactions of people and policy-makers in social participation for health: an inventory of participatory governance measures from a rapid systematic literature review

description: Additional file 1.
DOI: 10.6084/m9.figshare.26641999
title: Additional file 3 of Autologous non-invasively derived stem cells mitochondria transfer shows therapeutic advantages in human embryo quality rescue

description: Additional file 3: Fig. S1. The isolation and culture process of primary USC (A), GC (B), BMSC (C) and ADSC (D). Scale bars, 50 μm. Fig. S2. Identification of GC-specific surface marker FSHR. A Negative control. B Primary GC were positive for FSHR expression (stain brown). Scale bars, 50 μm. Fig. S3. USC tri-lineage differentiation in vitro. A Oil red O staining indicated lipid droplet formation after 21 days of in vitro adipogenic differentiation of USC. Scale bars, 50 μm. B, C In vitro osteogenic differentiation of USC after 14 days was identified by Alizarin red staining (B) and ALP staining (C) to indicate calcium nodule formation. Scale bars, 250 μm. D–F After 28 days of in vitro chondrogenic differentiation of USC, Toluidine blue (D), Safranin-O (E) and Masson’s trichrome (F) stainings revealed the presence of collagen and glycosaminoglycan (GAG) in the extracellular matrix. Scale bars, 50 μm. Fig. S4. The positive expressions of MSC surface specific markers in USC (A), BMSC (B) and ADSC (C). Black peaks represented isotype controls and green peaks represented various markers. All primary cells showed CD105 (+), CD73 (+), CD44 (+), HLA-DR (-), CD34 (-), CD45 (-). Fig. S5. Whole mitochondrial genome sequencing of 2 pairs of young and old USC. A Mitochondrial Circos map of YOUNG USC 1. B Mitochondrial Circos map of YOUNG USC 2. C Mitochondrial Circos map of OLD USC 1. D Mitochondrial Circos map of OLD USC 2. According to the structure of mitochondria, the Circos drawing is carried out according to the statistical depth. The Circos diagram has a total of 4 circles from the outside to the inside. The first ring is the mitochondrial H strand; the second ring is the mitochondrial L strand; in the third ring, the blue part is the coverage depth of each site of the mitochondria; the fourth ring is the position scale of the mitochondria. Fig. S6. Representative results of embryo ploidy by SurePlex WGA. A Representative result of euploid blastocyst from the Mito-ICSI group. B Representative result of segmental aneuploidy (≥ 10 Mbp) with deletion of ch.22q11.1-q13.33. C Representative result of complex aneuploidy (≥ 3 variations) with deletion of ch.4p16.3-q35.2, mosaicism at ch.6 and ch.14. D Representative result of mosaicism with both the partial duplication and deletion of multiple chromosomes. The black arrows represent the site of abnormal chromosomes. WGA, whole genome amplification Table S1. Comparison of USC mitochondrial genome sequencing between the young and old populations. Table S2. Clinical characteristics of IVF/ICSI donors of immature oocytes.
DOI: 10.6084/m9.figshare.26641999.v1
title: Additional file 3 of Autologous non-invasively derived stem cells mitochondria transfer shows therapeutic advantages in human embryo quality rescue

description: Additional file 3: Fig. S1. The isolation and culture process of primary USC (A), GC (B), BMSC (C) and ADSC (D). Scale bars, 50 μm. Fig. S2. Identification of GC-specific surface marker FSHR. A Negative control. B Primary GC were positive for FSHR expression (stain brown). Scale bars, 50 μm. Fig. S3. USC tri-lineage differentiation in vitro. A Oil red O staining indicated lipid droplet formation after 21 days of in vitro adipogenic differentiation of USC. Scale bars, 50 μm. B, C In vitro osteogenic differentiation of USC after 14 days was identified by Alizarin red staining (B) and ALP staining (C) to indicate calcium nodule formation. Scale bars, 250 μm. D–F After 28 days of in vitro chondrogenic differentiation of USC, Toluidine blue (D), Safranin-O (E) and Masson’s trichrome (F) stainings revealed the presence of collagen and glycosaminoglycan (GAG) in the extracellular matrix. Scale bars, 50 μm. Fig. S4. The positive expressions of MSC surface specific markers in USC (A), BMSC (B) and ADSC (C). Black peaks represented isotype controls and green peaks represented various markers. All primary cells showed CD105 (+), CD73 (+), CD44 (+), HLA-DR (-), CD34 (-), CD45 (-). Fig. S5. Whole mitochondrial genome sequencing of 2 pairs of young and old USC. A Mitochondrial Circos map of YOUNG USC 1. B Mitochondrial Circos map of YOUNG USC 2. C Mitochondrial Circos map of OLD USC 1. D Mitochondrial Circos map of OLD USC 2. According to the structure of mitochondria, the Circos drawing is carried out according to the statistical depth. The Circos diagram has a total of 4 circles from the outside to the inside. The first ring is the mitochondrial H strand; the second ring is the mitochondrial L strand; in the third ring, the blue part is the coverage depth of each site of the mitochondria; the fourth ring is the position scale of the mitochondria. Fig. S6. Representative results of embryo ploidy by SurePlex WGA. A Representative result of euploid blastocyst from the Mito-ICSI group. B Representative result of segmental aneuploidy (≥ 10 Mbp) with deletion of ch.22q11.1-q13.33. C Representative result of complex aneuploidy (≥ 3 variations) with deletion of ch.4p16.3-q35.2, mosaicism at ch.6 and ch.14. D Representative result of mosaicism with both the partial duplication and deletion of multiple chromosomes. The black arrows represent the site of abnormal chromosomes. WGA, whole genome amplification Table S1. Comparison of USC mitochondrial genome sequencing between the young and old populations. Table S2. Clinical characteristics of IVF/ICSI donors of immature oocytes.
DOI: 10.6084/m9.figshare.26642002
title: Additional file 1 of Assessing the impact of COVID-19 passes and mandates on disease transmission, vaccination intention, and uptake: a scoping review

description: Additional file 1.
DOI: 10.6084/m9.figshare.26642002.v1
title: Additional file 1 of Assessing the impact of COVID-19 passes and mandates on disease transmission, vaccination intention, and uptake: a scoping review

description: Additional file 1.
DOI: 10.6084/m9.figshare.26642026
title: Additional file 3 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 3: Table S2. Complete MS/proteome data.
DOI: 10.6084/m9.figshare.26642026.v1
title: Additional file 3 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 3: Table S2. Complete MS/proteome data.
DOI: 10.6084/m9.figshare.26642029
title: Additional file 4 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 4: Table S3. MS/proteome data – differentially expressed proteins.
DOI: 10.6084/m9.figshare.26642029.v1
title: Additional file 4 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 4: Table S3. MS/proteome data – differentially expressed proteins.
DOI: 10.6084/m9.figshare.26642032
title: Additional file 5 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 5: Table S4. GO, KEGG analysis of differentially expressed proteins.
DOI: 10.6084/m9.figshare.26642032.v1
title: Additional file 5 of Fatty acids abrogate the growth-suppressive effects induced by inhibition of cholesterol flux in pancreatic cancer cells

description: Additional file 5: Table S4. GO, KEGG analysis of differentially expressed proteins.
DOI: 10.15468/dl.9e6w5y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.421155 -32.223256, 148.421155 -32.229993, 148.423401 -32.229993, 148.423401 -32.223256, 148.421155 -32.223256))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065662-240626123714530/datasets/export for details.
DOI: 10.15468/dl.ev7b83
title: Occurrence Download

description: A dataset containing 646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is one of (Country mismatch, The taxon ID was not used in backbone matching, The scientific name differs on the record from that found in the checklist, The backbone match found using the taxon IDs differs from what would be found if using the scientific names , Individual count invalid, Individual count conflicts with occurrence status)",
 "OccurrenceStatus is Present",
 "TaxonKey is Paracanthurus Bleeker, 1863"
 ]
}

 The dataset includes 646 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065663-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26642155
title: Additional file 2 of Existing evidence on the effects of photovoltaic panels on biodiversity: a systematic map with critical appraisal of study validity

description: Additional file 2. Search results and citation title and full-text screening.
DOI: 10.6084/m9.figshare.26642158
title: Additional file 3 of Existing evidence on the effects of photovoltaic panels on biodiversity: a systematic map with critical appraisal of study validity

description: Additional file 3. Study critical appraisal.
DOI: 10.6084/m9.figshare.26642161
title: Additional file 4 of Existing evidence on the effects of photovoltaic panels on biodiversity: a systematic map with critical appraisal of study validity

description: Additional file 4. Systematic map database.
DOI: 10.6084/m9.figshare.26642161.v1
title: Additional file 4 of Existing evidence on the effects of photovoltaic panels on biodiversity: a systematic map with critical appraisal of study validity

description: Additional file 4. Systematic map database.
DOI: 10.15468/dl.erw8fv
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((146.065312 -36.553156, 146.065312 -36.557648, 146.067558 -36.557648, 146.067558 -36.559894, 146.076541 -36.559894, 146.076541 -36.557648, 146.072049 -36.557648, 146.072049 -36.555402, 146.067558 -36.555402, 146.067558 -36.553156, 146.065312 -36.553156))"
 ]
}

 The dataset includes 175 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065664-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s2gf4e
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.39134 -32.225502, 149.39134 -32.227748, 149.393586 -32.227748, 149.393586 -32.225502, 149.39134 -32.225502))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065665-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26642245
title: Additional file 2 of How legal problems are conceptualized and measured in healthcare settings: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.26642245.v1
title: Additional file 2 of How legal problems are conceptualized and measured in healthcare settings: a systematic review

description: Additional file 2.
DOI: 10.6084/m9.figshare.26587632
title: Additional file 2 of Preparation of a Klebsiella pneumoniae conjugate nanovaccine using glycol-engineered Escherichia coli

description: Additional file 2. Table S1. Primers used in this study.
DOI: 10.6084/m9.figshare.26587632.v1
title: Additional file 2 of Preparation of a Klebsiella pneumoniae conjugate nanovaccine using glycol-engineered Escherichia coli

description: Additional file 2. Table S1. Primers used in this study.
DOI: 10.15468/dl.6tmw6a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((149.08142 -32.227748, 149.08142 -32.234485, 149.085912 -32.234485, 149.085912 -32.227748, 149.08142 -32.227748))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065667-240626123714530/datasets/export for details.
DOI: 10.15468/dl.2m29hd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.81053 -36.557648, 143.81053 -36.56214, 143.806038 -36.56214, 143.806038 -36.564385, 143.812776 -36.564385, 143.812776 -36.557648, 143.81053 -36.557648))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0065666-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26587557
title: Additional file 1 of Integrative analysis of metabolome and transcriptome profiles to highlight aroma determinants in Aglianico and Falanghina grape berries

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.28366682
title: Data for "Blinking optical tweezers for power-efficient atom rearrangements"

description: MATLAB data used in "Blinking optical tweezers for power-efficient atom rearrangements".In common, variables with names 'iscatched_{}' correspond to the experimental survival probabilities, with 't_{}' correspond to the experimental conditions, and 'P_onoff_direct_{}' correspond to the simulational survival probabilities.(1) Atom_temperature_RNR: Release-and-recapture probabilities for several trap-off times for determining the temperature of the atom.(2) Fig2a_MC_simul, (3) Fig2b,c_MC_simul: Monte-Carlo simulation of survival probabilities for Figure 2, with different values of on-time (0 \mu s to 10 \mu s), off-time (0 \mu s to 15 \mu s) and the number of blinking cycles (1 to 100) (2), or on-time (0 \mu s to 10 \mu s), off-time (0 \mu s to 15 \mu s), central trap depth (U*Uratio) , trap width (r0*rratio) and the number of blinking cycles (1 to 100) (3).(4) Fig2b_Exp, (5) Fig2c_Exp: Experimental survival probabilities for Figure 2 (b) and (c), with different values of on-time (1 \mu s to 10 \mu s) and the number of blinking cycles (2 and 100).(6-9) Fig3{Scenario}_Probability: Experimental survival probabilities for Figure 3, through (a) to (d).(10) Fig4b_Exp: Experimental survival probabilites for Figure 4(b). In variable 'Mcatch', the first column corresponds to the sum of the number of loaded atoms over experimental shots, the second corresponds to the sum of the number of survived atoms over experimental shots, and the third is calculated survival probabilities. On the other hand, they are categorized over different rows, indicating the number of loaded atoms in each experimental shot.(11) Fig4c_Exp: Experimental survival probabilites for Figure 4(c), with different values of on-time (1.1 \mu s and 6 \mu s) and the number of blinking cycles (10^0 to 10^3).(12) Fig4c_MC_simul: Monte-Carlo simulation of survival probabilites for Figure 4(c), with different values of on-time (1.1 \mu s and 6 \mu s) and the number of blinking cycles (10^0 to 10^3).
DOI: 10.6084/m9.figshare.28366682.v1
title: Data for "Blinking optical tweezers for power-efficient atom rearrangements"

description: MATLAB data used in "Blinking optical tweezers for power-efficient atom rearrangements".In common, variables with names 'iscatched_{}' correspond to the experimental survival probabilities, with 't_{}' correspond to the experimental conditions, and 'P_onoff_direct_{}' correspond to the simulational survival probabilities.(1) Atom_temperature_RNR: Release-and-recapture probabilities for several trap-off times for determining the temperature of the atom.(2) Fig2a_MC_simul, (3) Fig2b,c_MC_simul: Monte-Carlo simulation of survival probabilities for Figure 2, with different values of on-time (0 \mu s to 10 \mu s), off-time (0 \mu s to 15 \mu s) and the number of blinking cycles (1 to 100) (2), or on-time (0 \mu s to 10 \mu s), off-time (0 \mu s to 15 \mu s), central trap depth (U*Uratio) , trap width (r0*rratio) and the number of blinking cycles (1 to 100) (3).(4) Fig2b_Exp, (5) Fig2c_Exp: Experimental survival probabilities for Figure 2 (b) and (c), with different values of on-time (1 \mu s to 10 \mu s) and the number of blinking cycles (2 and 100).(6-9) Fig3{Scenario}_Probability: Experimental survival probabilities for Figure 3, through (a) to (d).(10) Fig4b_Exp: Experimental survival probabilites for Figure 4(b). In variable 'Mcatch', the first column corresponds to the sum of the number of loaded atoms over experimental shots, the second corresponds to the sum of the number of survived atoms over experimental shots, and the third is calculated survival probabilities. On the other hand, they are categorized over different rows, indicating the number of loaded atoms in each experimental shot.(11) Fig4c_Exp: Experimental survival probabilites for Figure 4(c), with different values of on-time (1.1 \mu s and 6 \mu s) and the number of blinking cycles (10^0 to 10^3).(12) Fig4c_MC_simul: Monte-Carlo simulation of survival probabilites for Figure 4(c), with different values of on-time (1.1 \mu s and 6 \mu s) and the number of blinking cycles (10^0 to 10^3).
DOI: 10.18150/8pbjlp
title: Dataset for BOLAUR TNA of ATMO-ACCESS

description: OverviewThe dataset comprises measurements of atmospheric profiles, surface fluxes, and planetary boundary layer height for various days in 2021. The in-situ measurements were conducted on the rooftop platform (20 m above ground level) of the Warsaw Observatory Station at the Institute of Geophysics, Faculty of Physics, University of Warsaw (platform coordinates: 52°12'39.6" N, 20°58'57.4" E, 132 m a.s.l.). The remote-sensing observations were conducted form the ground platform of the Warsaw Observatory Station located in 80 m distance (52°12'40.5"N 20°59'00.2"E, 112 m. a.s.l.).In addition, dataset includes outputs from numerical simulations done by using the Large Eddy Simulation (LES) model, specifically the Parallelized LES Model (PALM). The simulations were carried out with a horizontal domain (x, y) of 5.0 km × 5.0 km and a vertical domain (z) of 5.0 km, precisely aligned with the geographic coordinates of the rooftop platform of the Warsaw Observatory Station.The dataset includes the following files:Atmospheric_profile_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncGradient_Method_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncWCT_Method_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncSurface_data_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncPALM_3d_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncPALM_Flux_OUTPUT_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncPALM_PBLH_OUTPUT_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncPALM_TKE_OUTPUT_wos_YYYYMMDDhhmm_YYYYMMDDhhmm.ncFile InformationThe data is stored in netCDF format, with variables provided for each day at 30-minute intervals. Reading data in this format can be accessed with open software called Python, R, Julia, Panoply, GrADS, Ferret, NCO, and CDO.YYYYMMDDhhmm_YYYYMMDDhhmm represents the start and end date/time (year, month, day, hour, and minute).AcknowledgmentsThe PALM model simulations were carried out within the European Commission's Horizon 2020 programme (ATMO-ACCESS, G.A. no. 101008004) for TNA BOLUAR.The extensive review, quality assurance and check of the published dataset was done within the National Science Centre, Poland, Weave-UNISONO programme (AEROPAN, G.A. no. 2021/03/Y/ST10/00206).The Warsaw Observatory Station acknowledges long-term support of EARLINET/ACTRIS and funding of EC Horizon 2020 grants: no. 739530 (ACTRIS-PPP), no. 871115 (ACTRIS-IMP), and no. 101008004 (ATMO-ACCESS). ATTENTION:We offer a free access to this dataset. The user is however encouraged to share the information on the data use with the Remote Sensing Laboratory by sending an e-mail to rslab@fuw.edu.pl.In the case this dataset is used for a scientific communication (publication, conference contribution, thesis) we would like to kindly ask for considering to acknowledge data provision by adding the following statement in Acknowledgments: "We acknowledge the data originators R. G. Carneiro, L. Janicka, M. Karasewicz, and I.S. Stachlewska for the quality-assurance, evaluation, and provision of data sets of the Remote Sensing Laboratory at the Faculty of Physics of the University of Warsaw, Poland."
DOI: 10.5281/zenodo.14829618
title: T-P-V data of liquid Fe-Mg alloys under the outer core conditions by FP-MD simulations
DOI: 10.5281/zenodo.14829619
title: T-P-V data of liquid Fe-Mg alloys under the outer core conditions by FP-MD simulations
DOI: 10.15468/dl.dyhfj7
title: Occurrence Download

description: A dataset containing 1754 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Quercus mongolica Fisch. ex Ledeb."
 ]
}

 The dataset includes 1754 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019114-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.