cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f7ns0ss8
title: Sperm quality biomarkers complement reproductive and endocrine parameters in investigating environmental contaminants in common carp (Cyprinus carpio) from the Lake Mead National Recreation Area (1999-2006)

description: Lake Mead National Recreational Area (LMNRA) serves as critical habitat for several federally listed species and supplies water for municipal, domestic, and agricultural use in the Southwestern U.S. Contaminant sources and concentrations vary among sub-basins within LMNRA. To investigate whether environmental contaminant exposure is associated with alterations in male common carp (Cyprinus carpio) gamete quality and endocrine- and reproductive parameters, data were collected among sub-basins (n = 7) over 7 years (1999 to 2006). Endpoints included the sperm quality parameters of motility, viability, mitochondrial membrane potential, count, morphology, and DNA fragmentation; plasma components were vitellogenin (VTG), 17beta-estradiol, 11-keto-testosterone, triiodothyronine, and thyroxine. Fish condition factor, gonadosomatic index, and gonadal histology parameters were also measured.
DOI: 10.5067/gflnd-3ac63
title: CSR TELLUS GRACE-FO Level-3 Monthly Land Water-Equivalent-Thickness Surface Mass Anomaly Release 6.0 version 03 in netCDF/ASCII/GeoTIFF Formats
DOI: 10.5281/zenodo.10619046
title: Datasets for "Individual and environmental factors influencing preen gland's morphology and physiology in the barn owl (Tyto alba)"

description: Avian preen gland helps birds cope with their environment, although its overall functioning remains unclear. We shed light on the complexity of the preen gland’s functioning by studying how multiple factors associate with gland morphology (size and shape) and physiology (wax secreted) in barn owls (Tyto alba). Individual factors (sex, breeding stage, body condition) were more important predictors of preen gland than environmental factors (temperature, humidity, brood size). Sex, depending on breeding stage in adults, influenced preen gland traits, pointing to the preen gland’s regulation by sex hormones and a greater pressure on females to protect their eggs, offspring and themselves throughout reproduction. Adults and fledglings in better condition had larger glands, pointing to the existence of physiological costs. Temperature and humidity, in interaction with plumage coloration, also influenced but to a lesser extent preen gland traits, suggesting that melanin pigmentation and preen gland act as superseding mechanisms when protecting plumage against microorganisms. Finally, fledglings living in larger broods had larger glands, suggesting a role for the social environment in preen gland’s functioning. Overall, our study supports the idea that preen gland functions in diverse biological contexts within the same species and is thus subject to multiple selective pressures.
DOI: 10.5281/zenodo.10645552
title: Densities derived from precise orbit determination of the Mars Odyssey and MRO satellites

description: This data set consist of daily mass densities derived from precise orbit determination of the Mars Reconnaissance Orbiter (MRO) satellite at 251 km and the Mars Odyssey (MO) satellite at 412 km. The data encompass 2006-2020 (MRO) and 2002-2020 (MO). Both satellites are in low-eccentricity near-polar day/night Sun-synchronous orbits. 

Also included are auxiliary data sets consisting of daily 10.7 cm solar radio fluxes adjusted to Mars orbit, and daily values of column dust optical depth from TES and THEMIS nadir observations integrated over all longitudes and between 0º and 90ºS latitude

More details are found in the README.txt file.

This data set is made available in connection with the following publication: 

Forbes, J.M., Bruinsma, S.L., Zhang, X., Marty, J.-C., Laurens, S. (2024). Long-term Variability of Mars’ Exosphere Density Based on Precise Orbital Analysis of Mars Reconnaissance Orbiter and Mars Odyssey. Geophysical Research Letters, 51. https://doi.org/10.1029/2023GL107044
DOI: 10.5281/zenodo.11181165
title: Memristive circuits based on multilayer hexagonal boron nitride for millimetre wave radiofrequency applications - Source data

description: Source data for the paper "Memristive circuits based on multilayer hexagonal boron nitride for radiofrequency and millimetre wave applications"

Find online at:

https://doi.org/10.1038/s41928-024-01192-2
DOI: 10.5281/zenodo.11654054
title: Dataset accompanying the publication: Acoustic cues of keyboard mechanics enable auditory localization of upright piano tones

description: Dataset accompanying the publication: Acoustic cues of keyboard mechanics enable auditory localization of upright piano tones (in J. Acoust. Soc. Am., 2024)
DOI: 10.5281/zenodo.3862782
title: Logistic Activity Recognition Challenge (LARa Version 01) – A Motion Capture and Inertial Measurement Dataset

description: <strong>LARa </strong>is the first freely accessible logistics-dataset for human activity recognition. In the ’Innovationlab Hybrid Services in Logistics’ at TU Dortmund University, two picking and one packing scenarios with 14 subjects were recorded using OMoCap, IMUs, and an RGB camera. 758 minutes of recordings were labeled by 12 annotators in 474 person-hours. The subsequent revision was carried out by 4 revisers in 143 person-hours. All the given data have been labeled and categorised into 8 activity classes and 19 binary coarse-semantic descriptions, also called attributes. You can find the latest version of the annotation tool here: https://github.com/wilfer9008/Annotation_Tool_LARa <strong>If you use this dataset for research, please cite the following paper: “LARa: Creating a Dataset for Human Activity Recognition in Logistics Using Semantic Attributes</strong><strong>”, Sensors 2020, DOI: 10.3390/s20154083</strong>
description: Acknowledgement: The work on this publication was supported by Deutsche Forschungsgemeinschaft (DFG) in the context of the project Fi799/10-2, HO2403/14-2 "Transfer Learning for Human Activity Recognition in Logistics".
DOI: 10.5281/zenodo.7056533
title: cBAF generates subnucleosomes that expand OCT4 binding and function beyond DNA motifs at enhancers

description: The canonical BAF complex (cBAF) is essential for chromatin opening at enhancers. However, the nature of the open chromatin remains unclear. Here we show that in addition to producing histone-free DNA, cBAF generates stable hemisome-like subnucleosomal particles containing the four core histones associated with 50-80 base pairs of DNA. Our genome-wide analysis indicates that cBAF makes these particles by targeting and splitting fragile nucleosomes. In mouse embryonic stem cells, these subnucleosomes become an in vivo binding substrate for the master transcription factor OCT4 independently of the presence of OCT4 DNA motifs. At enhancers, the OCT4-subnucleosome interaction increases OCT4 occupancy and amplifies the genomic interval bound by OCT4 by up to one order of magnitude, compared to the region occupied on histone-free DNA. We propose that cBAF-dependent subnucleosomes orchestrate a molecular mechanism that projects OCT4 function in chromatin opening beyond its DNA motifs.
description: The bigwig was created with deeptools from the replicate's fusion. Used parameters for bamCoverage : --outFileFormat bigwig --binSize 1 --blackListFileName http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/mm9-mouse/mm9-blacklist.bed.gz --effectiveGenomeSize 2701495761 --normalizeUsing RPKM --ignoreForNormalization chrX chrY chrM --skipNonCoveredRegions --MNase --minFragmentLength 10 --extendReads --centerReads --maxFragmentLength 500 We realized a liftover to convert from mm9 to mm10 genome version for both bed and bigwig with Crossmap (v0.2.8) and http://hgdownload.cse.ucsc.edu/goldenPath/mm9/liftOver/mm9ToMm10.over.chain.gz For human datas, hg38 was used. For the coverage, we removed fragment in the black list (http://mitra.stanford.edu/kundaje/akundaje/release/blacklists/hg38-human/hg38.blacklist.bed.gz). For the low100 files, we used a limit of 100 for the value of the max fragment length.
DOI: 10.5281/zenodo.7487288
title: Reduced Order Modeling for Linearized Representations of Microphysical Process Rates

description: Datasets for "Reduced Order Modeling for Linearized Representations of Microphysical Process Rates"
DOI: 10.5281/zenodo.7625940
title: A Building Imagery Database for the Calibration of Machine Learning Algorithms

description: An open database of 5276 building images from a parish in Lisbon (Alvalade), whose buildings have been classified according to a uniform taxonomy. This open database can be used for the testing and calibration of machine learning algorithms, as well as for the direct assessment of earthquake risk in Alvalade. <strong>Full Changelog</strong>: https://github.com/vsilva028/ML/commits/v1.0.0
DOI: 10.5281/zenodo.7709509
title: Gulf of Mexico planktonic foraminifera and stable isotope data from core EN-032-18PC spanning MIS 9 to MIS 5

description: <em>Database of the accepted manuscript</em>: Arellano-Torres et al., 2023. The Loop Current circulation over the MIS 9 to MIS 5 based on planktonic foraminifera assemblages from the Gulf of Mexico. Paleoceanography and Paleoclimatology, DOI: 10.1029/2022PA004568 In the sediment Core EN-032-18PC collected below the influence of the Loop Current in the eastern Gulf of Mexico, we studied mixed layer conditions and the intensity of the surface and subsurface waters flowing from the Caribbean to the gulf. This database includes analyses of 136 samples in three Supplementary Tables. (Table S1) Bulk sediment and sand fraction (&gt;62 μm) weight (g), the absolute abundance (tests per sample) of 33 species of planktonic foraminifera. (Table S2) Relative abundance (%) of planktonic foraminifera and factor loadings of two factors (Q-mode factor analysis). (Table S3) Stable isotopes (δ<sup>18</sup>O-PDB and δ<sup>13</sup>C-PDB) (‰) of <em>Globigerinoides ruber</em> (white) and the loess-smoothing of the series with polynomial regression.
description: - Marine sediment core information and sampling. Cruise and sample: EN032-18, Device: Piston corer, Latitude: 24.55833º N, Longitude: -86.59º W. Water depth: 2030 m. Repository: University of Rhode Island IGSN URI001023. - Project grant: "Natural climate variability of temperature and surface reconstructions in the Gulf of Mexico over the Late Quaternary." Universidad Nacional Autonoma de Mexico - DGAPA-PAPIIT no. IN118220.
description: {"references": ["Arellano-Torres, E., Amezcua-Montiel, A. and Casas-Ortiz, A., 2023. The Loop Current circulation over the MIS 9 to MIS 5 based on planktonic foraminifera assemblages from the Gulf of Mexico. Paleoceanography and Paleoclimatology, DOI: 10.1029/2022PA004568"]}
DOI: 10.5281/zenodo.8337086
title: Research Funding in the Middle East and North Africa: Analyses of Acknowledgments in Scientific Publications (unified funders)

description: This dataset is the result of the unification of funder names acknowledged in scientific publications indexed in the Web of Science with at least one author affiliated to an institution located in the Middle East and North Africa. This list contains 1,059 unified names of funders from the 22 MENA countries as of 16 March 2023 along with their type and country.
DOI: 10.5517/cc1j4h6c
title: CCDC 1404492: Experimental Crystal Structure Determination

description: Related Article: Ulrich Flörke|2015|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20903656.v3
title: Trustworthy and Collaborative Requirements Traceability: Experts' feedback on a Blockchain-enabled Framework

description: The paper validates a blockchain framework and prototype for reliable requirements traceability.
DOI: 10.1285/i20356609v13i3p1417
title: In the Name of Sovereignty. Right-Wing Populism and the Power of the Judiciary in Western Europe

description: This contribution addresses the question of how radical right-wing populist parties in Western Europe frame the issue of judicial power. To date, there have been very few in-depth empirical analyses on the topic – a gap that this article aims to fill. The paper will compare two radical right-wing populist parties, the Dutch Freedom Party and the Swiss People's Party, by focusing on party manifestos, parliamentary proceedings and public speeches by their leaders. Our findings show that these parties and leaders tend to undermine the rule of law by calling the impartial position of judges and the autonomy of the judiciary into question in the name of a popular, national and political sovereignism.
DOI: 10.17632/wdfkxsnpzc.1
title: DroneTrafficZA2020: A sample dataset of N4 freeway traffic adjacent to Engineering 4.0 in South Africa

description: Dataset associated with the primary article: Real-time traffic quantization using a mini edge artificial intelligence platform A video sample captured by a DJI Mavic Air on the 28th of July at 11:30 of the N4 freeway located in Pretoria, South Africa, adjacent to the Engineering 4.0 campus. The high-definition video (4K, 29.97fps) is 18 minutes and 45 seconds in length (2020718_Mavic_Air_4K.mp4). The second video is a cropped version (1220x560 px) used for the analysis (20200728_Mavir_Air_Cropped.mp4). The analysis involves: (1) generating a ground truth dataset of every vehicle (either a "car" or "truck") entering the frame; only vehicles travelling West (moving right-to-left) toward Hatfield is considered. The dataset contains both the frame number the vehicle is first observed and its associated class, and (2) automatic object detection and counting of vehicles as processed by OpenDataCam. Both the ground truth (groundTruth.csv) and inference (OpenDataCam.csv) dataset is provided in a CSV file format. The line counter configuration file from OpenDataCam (line_counter_config.json) is provided to aid reproducibility. The Python script (ProcessOpenDataCam.py) to process the data is also provided. OpenDataCam, with the correct threshold settings of the AI network, manages to count vehicles to within a 5% accurarcy. Summary of files: + 2020718_Mavic_Air_4K.mp4 - 4K resolution video file captured by the drone + 20200728_Mavir_Air_Cropped.mp4 - Cropped 4K video centered about the freeway (1220x560 px) + groundTruth.csv - ground truth data of binary vehicle classification + OpenDataCam.csv - vehicle counting and detection output data provided by OpenDataCam + line_counter_config.json - line counter configuration file from OpenDataCam + processOpenDataCam.py - Python script file that processes the CSV files
DOI: 10.48443/r517-kg13
title: Soil physical and chemical properties, distributed initial characterization (DP1.10047.001)
title: RELEASE-2024

description: This data product contains quality-controlled, native sampling resolution taxonomic, physical, and chemical data from soils measured during the course of an initial soil characterization effort at each NEON site. This effort was executed by the Soil Science Division of the Natural Resources Conservation Service (NRCS), in partnership with the USDA Agriculture Research Service (ARS). For additional details, see the user guide listed in the Documentation section below. Queries for this data product will return field collection metadata, soil taxonomy, bulk density, particle size distribution, and a host of geochemical measurements on a per horizon basis, along with a summary table of external lab detection limits and accuracy in the expanded package. Associated with these data are soil pedon descriptions and narrative summary documents, which place the plot-level data into site-level context. These documents can be found in the [NEON Document Library](http://data.neonscience.org/documents), in the folder Soil Characterization Summaries &gt; Distributed plots. Additional soil material collected during this effort is archived and [available upon request](https://www.neonscience.org/samples/soil-archive).

Latency:
Data were collected once, at the establishment of each site. Data were published within one year of collection, and future collections at existing sites are not expected.
description: At each site, up to 4 Tower and 30 Distributed plots were sampled, with number of plots determined by NRCS based on site variability and number of soil map units present. In most Distributed base plots, a single 1 m x 1 m x 1 m soil pit was excavated. In Tower plots and sites where pit sampling is not permitted, several 10 cm diameter, 1 m deep cores were collected from within a 1 m x 1 m square (where possible). Upon excavating a pit or collecting cores, NRCS described the profile and all major horizons, assessed coarse fragment volumes, collected bulk density samples (most often by the clod method), then collected enough material to conduct all physical and geochemical laboratory analyses. Field sampling and descriptions followed the methods outlined in the NRCS Field Book for Describing and Sampling Soils, version 3.0. Laboratory analyses were conducted at the Kellogg Soil Survey Laboratory in Lincoln, Nebraska following the standard operating procedures outlined in the Soil Survey Laboratory Methods Manual, Report No. 42, Version 5, 2014. Some horizons do not have bulk density measurements - this includes plots and sites where cores were taken instead of pits and horizons where the bulk density sample was destroyed, lost, or of poor quality. Instrumentation:
DOI: 10.5067/modst-mo4n4
title: MODIS Terra Level 3 SST Thermal IR Monthly 4km Nighttime v2014.0
DOI: 10.5156/deas.2017.m.002
title: Scientific Use File Deutscher Alterssurvey (SUF DEAS) 2017, Version 1.1
title: Scientific Use File German Ageing Survey (SUF DEAS) 2017, Version 1.1

description: Der Deutsche Alterssurvey (DEAS) ist eine Langzeitstudie zum Wandel der Lebenssituationen und Alternsverläufe von Menschen, die sich in der zweiten Lebenshälfte befinden. Grundlage sind bundesweit repräsentative Befragungen im Quer- und Längsschnitt von jeweils mehreren tausend Teilnehmern im Alter ab 40 Jahren.
In den Erhebungsjahren 1996, 2002, 2008 und 2014 wurde je eine neue Basisstichprobe gezogen und in den Jahren 2002, 2008, 2011, 2014 und 2017 wurden frühere Teilnehmer erneut interviewt (Panel).
Im Jahr 2017 wurden (wie in den vorangegangenen Jahren) folgende Themen erhoben:

Beruflicher Werdegang, Arbeit und Ruhestand
Außerberufliche Tätigkeiten und ehrenamtliches Engagement
Partnerschaft, Familie und Generationenbeziehungen
Haushalt und soziales Netzwerk
Wohnen und Mobilität
Ökonomische Lage und Vorsorge
Soziale und finanzielle Unterstützung
Lebensqualität und Wohlbefinden
Gesundheit und Gesundheitsverhalten
Hilfe- und Pflegebedürftigkeit
Einstellungen, Normen, Werte und Altersbilder.
description: The German Ageing Survey (DEAS) is a longitudinal survey for the analysis of life situations and biographies of people in the second half of their lives. The data is based on nationally representative surveying (cross-sectional and longitudinal) of some thousand participants from the age of 40 onwards.<br> The first base sample was drawn and surveyed in 1996, new base samples were added in 2002, 2008 and 2014. Additionally, in the years 2002, 2008, 2011, 2014 and 2017 previous participants have been re-surveyed (panel).
In 2017, as in the previous survey years, the following topics have been conducted:

Occupational Biography, Work and Retirement
Social Participation and Voluntary Work
Partnership, Family and Intergenerational Relations
Household and Social Network
Living Arrangements and Mobility
Economic Status and Saving
Social and Financial Support
Quality of Life and Well-Being
Health and Health-Related Behaviour
Help and Care-Dependency
Attitudes, Norms, Values and Images of Old Age
description: Face-to-face interview: CAPI/CAMI
description: - schriftlicher Fragebogen zum Selbstausfüllen (PAPI) bzw. zum Online-Ausfüllen (CAWI)
- Lungenvolumentest
- Zahlen-Zeichen-Test
description: Panelstichprobe (n=6626): Erneute Befragung von Teilnehmern aus den vorangegangenen Basisstichproben (ohne Ausländerstichprobe 2002).
DOI: 10.5281/zenodo.10246070
title: Model outputs and scripts to reproduce figures of a manuscript in revision in Paleoceanography & Paleoclimatology

description: The model outputs are in Model/outputs and the scripts to make figures are in Model/scripts.
DOI: 10.5281/zenodo.10629193
title: Simulation data archive: Enhanced ion acceleration due to high-shear tangential discontinuities upstream of quasi-perpendicular shocks

description: Matlab code and data used to produce figures for submission to JGR: Space physics.
DOI: 10.5281/zenodo.10914602
title: Changes in phytoplankton size-structure alter trophic-transfer in a temperate, coastal planktonic food-web

description: Datasets, Metadata, Figures and Matlab codes used to produce the figures used in "Changes in phytoplankton size-structure alter trophic-transfer in a temperate, coastal planktonic food-web"
DOI: 10.5281/zenodo.3973049
title: References for articles included in text analysis

description: The raw data for the literature review of Construction 4.0 technologies in the context of construction projects.
DOI: 10.5281/zenodo.4642238
title: Illumina Sequencing Data for "Design of synthetic human gut microbiome assembly and butyrate production"

description: Illumina Sequencing Data for Clark et al., "Design of synthetic human gut microbiome assembly and butyrate production", Nature Communications, 2021
DOI: 10.5281/zenodo.8079388
title: Dataset Artifact for Prodigy: Towards Unsupervised Anomaly Detection in Production HPC Systems

description: The dataset contains a small set of application runs from Eclipse supercomputer. The applications run with and without synthetic HPC performance anomalies. More detailed information regarding synthetic anomalies can be found at: https://github.com/peaclab/HPAS. We have chosen four applications, namely LAMMPS, sw4, sw4Lite, and ExaMiniMD, to encompass both real and proxy applications. We have executed each application five times on four compute nodes without introducing any anomalies. To showcase our experiment, we have specifically selected the "memleak" anomaly as it is one of the most commonly occurring types. Additionally, we have also executed each application five times with the chosen anomaly. The dataset we have collected consists of a total of 160 samples, with 80 samples labeled as anomalous and 80 samples labeled as healthy. For the details of applications please refer to the paper. The applications were run on Eclipse, which is situated at Sandia National Laboratories. Eclipse comprises 1488 compute nodes, each equipped with 128GB of memory and two sockets. Each socket contains 18 E5-2695 v4 CPU cores with 2-way hyperthreading, providing substantial computational power for scientific and engineering applications.