cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/f7445jz9
title: Early Estimates of Herbaceous Annual Cover in the Sagebrush Ecosystem

description: Cheatgrass dramatically changes shrub steppe ecosystems in the West, mainly by changing the fire regime. The creation of maps of current-season cheatgrass location and density has been difficult to estimate rapidly. USGS researchers have developed methods for producing a near-real-time cheatgrass percent cover dataset. They have completed a dataset that depicts cheatgrass across a large portion of the sagebrush ecosystem including the Great Basin and Wyoming for the current year (2017). Having cheatgrass maps early in the summer can help land managers as they plan fire operations and protective measures for human development and crucial wildlife habitats.
DOI: 10.5281/zenodo.13855178
title: Computed Tomography and XRF data for core SQB5 (Lower Acorn Woman Lake)

description: This file contains the Computed Tomography and X-ray Fluorescence data for SBQ5 from Lower Acorn Woman Lake, Oregon. It is used in the publication: 

Sedimentary record of historical seismicity in a small, southern Oregon lake

Authored by: Ann E. Morey, Mark D. Shapley, Daniel G. Gavin, Alan R. Nelson and Chris Goldfinger
DOI: 10.5281/zenodo.13891796
title: XRD for provenance

description: This is an Excel file that contains the XRD data used to identify the mineralogy of the sediment and rock types at Acorn Woman Lakes, Oregon. These data are presented in figures in the Supplementary data for Morey et al., 2024:

"Sedimentary record of historical seismicity in a small, southern Oregon lake" 

by: Ann E. Morey, Mark D. Shapley, Daniel G. Gavin, Alan R. Nelson and Chris Goldfinger
DOI: 10.5281/zenodo.14162775
title: Future freshwater fluxes from the Antarctic ice sheet

description: ===============================================================Future freshwater fluxes from the Antarctic ice sheet (dataset)===============================================================

-----------------------INTRODUCTION-----------------------

This dataset contains historically-calibrated projections of Antarctic freshwater fluxes (ice-shelf melting, iceberg calving, and surface meltwater runoff) under low and very-high emission scenarios for 27 drainage basins and 5 ocean sectors until 2300.

We perform, with the Kori-ULB ice-sheet model v0.91, an ensemble of historically-calibrated simulations of the Antarctic ice sheet between 1990 and 2300 forced by atmospheric and oceanic projections inferred from a subset of models from the sixth phase of the Coupled Model Intercomparison Project (CMIP6) under low- and very high-emission scenarios. 

We refer to the associated manuscript for more information on the applied methodology.

-------------------------PROVIDED DATA-------------------------



'SSP126_FWF_1990_2300_ZwallyBasins.nc' and 'SSP585_FWF_1990_2300_ZwallyBasins.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface mass balance, sub-shelf melt, and calving fluxes (in Gt/yr) for each of the 27 Zwally drainage basins (see http://imbie.org/imbie-2016/drainage-basins/) under a SSP1-2.6 and SSP5-8.5 scenario, respectively.

'SSP126_FWF_1990_2300_OceanSectors.nc' and 'SSP585_FWF_1990_2300_OceanSectors.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface mass balance, sub-shelf melt, and calving fluxes (in Gt/yr) for each of the 5 ocean sectors (Weddell Sea, Indian Ocean, western Pacific Ocean, Ross Sea, Amundsen & Bellingshausen Sea) under a SSP1-2.6 and SSP5-8.5 scenario, respectively.

'SSP126_FWF_1990_2300_AIS.nc' and 'SSP585_FWF_1990_2300_AIS.nc' each contain yearly timeseries of the [5 25 50 75 95] percentiles for the calibrated probabilistic projections of Antarctic net mass balance, surface meltwater runoff, sub-shelf melt, and calving fluxes (in Gt/yr) for the Antarctic Ice Sheet under a SSP1-2.6 and SSP5-8.5 scenario, respectively.
DOI: 10.5281/zenodo.14168900
title: Stimulated Raman photothermal spectroscopy for gas sensing in a hollow-core optical fiber

description: This folder supplies the raw data and the plot data for the Figs. of 'Stimulated Raman photothermal spectroscopy for gas sensing in a hollow-core optical fiber' by Hanyu Liao, Yan Zhao, etc.
DOI: 10.6073/pasta/1bf2a9fcbd47f8af1c789cabe02322d6
title: Preparation of dissolved organic carbon (DOC) leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022

description: Dissolved organic carbon (DOC) was leached from permafrost soils collected from the frozen permafrost layer at four sites underlying tussock tundra or wet sedge tundra vegetation and from both undisturbed soil and a thermokarst failure on the North Slope of Alaska during the summers of 2018 and 2022.
DOI: 10.6073/pasta/3a34daab0f8bb4e59ef39068f311fa94
title: Daily water-column rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) leached from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022

description: Dissolved organic carbon (DOC) was leached from permafrost soils near the Toolik Field Station in the Alaskan Arctic. Daily rates of sunlight absorption by chromophoric dissolved organic matter (CDOM) from the permafrost soil leachates over the water column depth of an arctic headwater stream were quantified.
DOI: 10.6073/pasta/e386e272d73577e42b2ae1a18fecf6a0
title: Methane concentrations in dissolved organic carbon (DOC) leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2019

description: Methane (CH4) concentrations were measured in dissolved organic carbon (DOC) leachates of permafrost soils collected from the frozen permafrost layer at five sites underlying tussock tundra or wet sedge vegetation on the North Slope of Alaska during the summers of 2018 and 2019.
DOI: 10.6073/pasta/f7a565d6b8b8ca1b5fa2d8f4d28dee4b
title: Accession numbers for radiocarbon and stable carbon isotopes of dissolved organic carbon (DOC) and dissolved inorganic carbon (DIC) in soil leachates from permafrost soils collected from the North Slope of Alaska in the summers of 2018 and 2022

description: Leachates of dissolved organic carbon (DOC) from permafrost soils were prepared from soils collected from the North Slope of Alaska in 2018 and 2022. Soil leachates were then either kept in the dark or exposed to light from LEDs at 305 nm (UV) and 405 nm (visible), and then inoculated with native microbial communities and incubated. At the start of the biological incubations, single replicates of the DOC after dark or light treatment and inoculation were assigned accession numbers and analyzed for 14C and 13C at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility. At the end of the biological incubations, duplicates of the dissolved inorganic carbon (DIC) in those waters were assigned accession numbers and analyzed for 14C and 13C at the NOSAMS facility.
DOI: 10.6084/m9.figshare.27641832
title: Supplementary Material for: THE ASSOCIATION OF IMPAIRED VIBRATION SENSATION IN THE LOWER LIMB WITH TESTS OF COGNITION IN OLDER PEOPLE The Cardiovascular Health Study

description: Introduction: The prevalence of peripheral neuropathy (PN) in the lower limb increases with age and with the presence of diabetes. Studies show an association of PN with advanced cognitive impairment. Here we examine the association of PN with measures of early cognitive deficits in a cohort of older adults without apparent cognitive impairment, with or without diabetes.
Methods: A total of 2798 participants from the Cardiovascular Health Study were examined, mean age 80 years. All underwent tests of overall cognition (3MSE), executive function (DSST), and visual memory (BVRT). Impairment of vibration sensation in the toes, ankles, and tibial tuberosities was ascertained. Participants were graded according to the extent of impairment. Adjusted linear regression analyses of the extent of impaired vibration sensation with cognitive tests were performed. Results were further categorized by presence or absence of diabetes.
Results: 70% of participants had intact vibration sensation in the toes; 8% had no vibration sensation in the tibial tuberosities or below. Compared to participants with intact vibration sensation in the toes, those with no vibration sensation in the tibial tuberosities had lower 3MSE scores. Tests of executive function were lower in a stepwise manner with greater impaired vibration sensation. Visual memory was less strongly associated with impaired vibration sensation. Findings did not differ significantly by diabetes status. 
Conclusion: In older adults, impaired vibration sensation in the lower limb is associated with impaired executive function and visual memory. These findings did not differ by diabetes status.
DOI: 10.6084/m9.figshare.c.3602330_d2
title: Additional file 5 of QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics

description: Spreadsheet file with full details of, a) differential expression analysis results for GSE26049, b) list of probes used in the signature, and c) full results from QUADrATiC. (XLSX 5457.92 kb)
DOI: 10.6084/m9.figshare.c.3602330_d1
title: Additional file 3 of QUADrATiC: scalable gene expression connectivity mapping for repurposing FDA-approved therapeutics

description: Spreadsheet file with the full list of significant positive connections from QUADrATiC for the HDAC signature used to validate the software. (XLSX 84.0 kb)
DOI: 10.6084/m9.figshare.c.3602282_d1
title: Additional file 1: of Effectiveness of a smartphone app on improving immunization of children in rural Sichuan Province, China: a cluster randomized controlled trial

description: Raw database for EPI APP Program. (XLSX 21421 kb)
DOI: 10.6084/m9.figshare.c.3602216_d8
title: Additional file 5: of Genomic copy number variation association study in Caucasian patients with nonsyndromic cryptorchidism

description: CNV calls for Group 1 cases passed sample QC. Each column in Additional file 5 represents CNV location, SNPs numbers contained within the CNV, the length of the CNV, copy number (cn) of the CNV call, sample id, the starting marker identifier and the ending marker identifier in the CNV, and confidence score in PennCNV calling. (XLSX 653Â kb)
DOI: 10.6084/m9.figshare.c.3602216_d6
title: Additional file 4: of Genomic copy number variation association study in Caucasian patients with nonsyndromic cryptorchidism

description: CNVs validation using TaqMan CNV assays and QuantStudioÂŽ 3D Digital PCR System. Listed the samples tested for CNV validating and the results. (XLSX 10Â kb)
DOI: 10.5281/zenodo.14439621
title: Global overview of plastic ingestion by seabirds
DOI: 10.5281/zenodo.14439622
title: Global overview of plastic ingestion by seabirds
DOI: 10.6084/m9.figshare.c.3597635_d1
title: MOESM2 of Chromatin variation associated with liver metabolism is mediated by transposable elements

description: Additional file 2: Table S2. Counts of TEs in subfamilies.
DOI: 10.6084/m9.figshare.c.3597560_d9
title: Additional file 6: Table S5. of The impact and origin of copy number variations in the Oryza species

description: The formation mechanisms of non-co-linear CNV genes inferred by signatures of breakpoints (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3597560_d8
title: Additional file 1: Table S1. of The impact and origin of copy number variations in the Oryza species

description: An overview of CNV events in each rice accession was presented. For each CNV event, we listed detailed information on its position, length, ancestral state, formation mechanism, allele frequency, and overlapped gene ID. For those 90 CNV events validated by PCR experiments, the primer sequences and the templates used were included. CNVs overlapping with previously published data were also indicated. The presence of each CNV event in rice accessions was listed separately. The functional annotation information for each CNV gene was displayed in a separate excel sheet. (XLSX 1293 kb)
DOI: 10.15468/dl.qfys2t
title: Occurrence Download

description: A dataset containing 6681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Littorinidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6681 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033063-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597560_d7
title: Additional file 5: Table S4. of The impact and origin of copy number variations in the Oryza species

description: Homology analysis of the conserved CNV genes in the Nipponbare genome (XLSX 150 kb)
DOI: 10.6084/m9.figshare.c.3597560_d5
title: Additional file 8: Table S7. of The impact and origin of copy number variations in the Oryza species

description: The formation mechanisms of non-collinear CNV genes inferred by signatures of breakpoints (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3597560_d6
title: Additional file 9: Table S8. of The impact and origin of copy number variations in the Oryza species

description: The proportion of different CNV formation mechanisms (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3597560_d3
title: Additional file 3: Table S3. of The impact and origin of copy number variations in the Oryza species

description: List of functional CNV genes validated by PCR experiments or alignments in the Oryza species (XLSX 108 kb)
DOI: 10.6084/m9.figshare.c.3597560_d4
title: Additional file 2: Table S2. of The impact and origin of copy number variations in the Oryza species

description: Detail Gene ontology (GO) enrichment analysis of CNV genes. Genes were annotated by InterProScan to assign GO annotations. The enrichment of GO was calculated using a hypergeometirc distribution statistical testing method with false discovery rate (FDR) correction by the Benjamini and Hochberg method. (XLSX 108 kb)
DOI: 10.15468/dl.jv4avs
title: Occurrence Download

description: A dataset containing 24417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Gambia",
 "IucnRedListCategory is one of (NT, VU, EN, CR, EW, EX)"
 ]
}

 The dataset includes 24417 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033064-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3597560_d2
title: Additional file 7: Table S6. of The impact and origin of copy number variations in the Oryza species

description: The proportion of different CNV formation mechanisms in the Nipponbare genome (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3597539_d5
title: Additional file 3 of ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

description: Parameter files used by xQuest, ProteinProspector, Kojak, and ECL, respectively. (ZIP 17 kb)
DOI: 10.6084/m9.figshare.c.3597539_d4
title: Additional file 5 of ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

description: Kojakâ  s pre-selection list of PSMs only identified by ECL. (ZIP 5147 kb)
DOI: 10.6084/m9.figshare.c.3597539_d3
title: Additional file 2 of ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

description: Detailed results of synthetic peptides and 26S Proteasome samples. (ZIP 4432 kb)
DOI: 10.6084/m9.figshare.3518963.v1
title: Appendix D. Results of the paired t tests on the effects of treatment (bagged vs. open branches) on the different parameters of pollination success of hawthorn (Crataegus spp.) and dog rose (Rosa canina) flowers in forest edges and in connected and isolated hedges.

description: Results of the paired t tests on the effects of treatment (bagged vs. open branches) on the different parameters of pollination success of hawthorn (Crataegus spp.) and dog rose (Rosa canina) flowers in forest edges and in connected and isolated hedges.
DOI: 10.6084/m9.figshare.3522440.v1
title: Appendix A. Means of subplot means (before back-transformation).

description: Means of subplot means (before back-transformation).
DOI: 10.6084/m9.figshare.3516089.v1
title: Appendix A. A table showing timberland area (as of 2005) in the seven states in the northeastern United States by county and by stocking class.

description: A table showing timberland area (as of 2005) in the seven states in the northeastern United States by county and by stocking class.
DOI: 10.6084/m9.figshare.3516776
title: Appendix D. Figure showing the effect of background mortality rate on modeled smolt migration success.

description: Figure showing the effect of background mortality rate on modeled smolt migration success.
DOI: 10.6084/m9.figshare.3518957.v1
title: Appendix A. Photograph of a Sundays Valley farm pond.

description: Photograph of a Sundays Valley farm pond.
DOI: 10.6084/m9.figshare.3512114.v1
title: Appendix A. The distribution of Persian fallow deer home ranges according to the average topographical slope and the ranking assigned to each.

description: The distribution of Persian fallow deer home ranges according to the average topographical slope and the ranking assigned to each.
DOI: 10.6084/m9.figshare.3516776.v1
title: Appendix D. Figure showing the effect of background mortality rate on modeled smolt migration success.

description: Figure showing the effect of background mortality rate on modeled smolt migration success.
DOI: 10.6084/m9.figshare.3512099.v1
title: Appendix A. A figure showing monthly mean and delta Tº intertidal (+ 0.2 m MLLW) seawater temperatures at Diablo Cove, South Diablo Point, and Field's Cove.

description: A figure showing monthly mean and delta Tº intertidal (+ 0.2 m MLLW) seawater temperatures at Diablo Cove, South Diablo Point, and Field's Cove.
DOI: 10.6084/m9.figshare.3511304.v1
title: Appendix A. A description of the optimization procedure used to derive Eqs. 1 and 2 for the benthic response index.

description: A description of the optimization procedure used to derive Eqs. 1 and 2 for the benthic response index.
DOI: 10.6084/m9.figshare.3511961.v1
title: Appendix B. A photograph of the study area and some representative traps.

description: A photograph of the study area and some representative traps.
DOI: 10.6084/m9.figshare.3543677.v1
title: affective_sfmri.zip

description: Healthy participants were imaged at 3 tesla (Siemens Magnetom Trio) using a T2-weighted single-shot fast spin-echo sequence (HASTE) for BOLD contrast and high image quality in the brainstem and spinal cord.Images were acquired in contiguous sagittal planes spanning from below the T1/T2 intervertebral disc to abovethe thalamus.Participants were familiarized with the study paradigm in advance, and temperatures were calibrated to producea pain rating of 50 on a 100 point scale (corresponding to "moderate pain").  Variations in pain ratings occured acrossrepeated runs but the temperature was not varied after the initial calibration.Multiple runs were acquired in each participant in a randomly interleaved manner.  For "stim" runs the participant was informed 1 minute after the start of the run that a stimulus would be applied. The stimulus was applied starting 1 minute 50 seconds after the start of the run, and consisted of 10 brief contacts of heated thermode against the skin overlying the thenar eminence on the right hand (C6 dermatome).  Contacts lasted 1.5 seconds and onsets were every 3 seconds, for a total of 30 seconds of stimulation. After the stimulus scanning was continued for 2 minutes 10 seconds.  The total duration of each run was 4 minutes 30 seconds.For "nostim" runs participants were informed 1 minute after the start of the run that a stimulus woudl not be applied.The run continued for the total duration of 4 minutes and 30 seconds.A rest period of 2 minutes was allowed between repeated runs to allow receptors on the skin to recover and toacquire pain ratings from the participant.The total TR for each volume is 6.75 seconds (TR is specified per slice for HASTE sequences, and the actual slice TR was 750 msec, not the 720 msec specified in the image headers), and a total of 40 volumes were acquired for each run. A total of 5 runs were acquired for each study type (stim or nostim) in each participant and these data are to be combined into one data set for each study type. One exception is participant 17 with 4 runs acquired in thenostim condition.Participant information and pain ratings for each run are provided in the Excel files.
DOI: 10.6084/m9.figshare.c.3291326_d240
title: unfolding mutation screen matrix for Rab escort protein 1

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d250
title: unfolding mutation screen matrix for interphotoreceptor retinoid binding protein domain 3

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d246
title: unfolding mutation screen standard heat map for interphotoreceptor retinoid binding protein domain 2

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d241
title: python file for critical structure of interphotoreceptor retinoid binding protein domain 1 readable in UCSF Chimera session

description: critical foldability structure for the UCSF Chimera (Python)
DOI: 10.6084/m9.figshare.c.3291326_d253
title: unfolding mutation screen matrix for interphotoreceptor retinoid binding protein domain 4

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d244
title: unfolding mutation screen standard heat map for interphotoreceptor retinoid binding protein domain 1

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d252
title: unfolding mutation screen cluster heat map for interphotoreceptor retinoid binding protein domain 4

description: UMS cluster  map
DOI: 10.6084/m9.figshare.c.3291326_d247
title: unfolding mutation screen cluster heat map for interphotoreceptor retinoid binding protein domain 3

description: UMS cluster  map
DOI: 10.6084/m9.figshare.c.3291326_d214
title: unfolding mutation screen cluster heat map for retinal pigment epithelium-specific protein 65kDa

description: UMS cluster  map
DOI: 10.6084/m9.figshare.c.3291326_d239
title: unfolding mutation screen matrix for BB1 crystallin

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d222
title: unfolding mutation screen matrix for tissue inhibitor metalloprotease 3

description: UMS matrix
DOI: 10.6084/m9.figshare.c.3291326_d224
title: unfolding mutation screen standard heat map for tissue inhibitor metalloprotease 3

description: UMS standard map
DOI: 10.6084/m9.figshare.c.3291326_d225
title: python file for critical structure of WD repeat domain 36  readable in UCSF Chimera session

description: critical foldability structure for the UCSF Chimera (Python)
DOI: 10.6084/m9.figshare.c.3291326_d238
title: unfolding mutation screen python code

description: UMS Python program
DOI: 10.35110/63b1d8da-94a7-406b-adc2-6d5184f8f03f
title: Observatoire des risques côtiers en Bretagne (OSIRISC), données de la composante Aléas

description: La présente fiche contient les données de l'observatoire OSIRISC, servant notamment à construire les indicateurs d'aléas de l'application OSI. Les fichiers de cette fiche n'ont pour le moment pas vocation à être partagés largement. Ces données restent toutefois accessibles sur demande auprès des membres de l'équipe de l'observatoire.
DOI: 10.15468/dl.nfafft
title: Occurrence Download

description: A dataset containing 809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philinidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 809 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033065-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.