cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gcnrt8rb29
title: Fietz et al., 2021 - OA Dataset

description: Dataset that was collected for publication in S.W. Fietz, M.K. Gingras, J.A. MacEachern, L. Rinke-Hardekopf, and S.E. Dashtgard, 2021. Sedimentology and neoichnology of a muddy translating point bar in the fluvio-tidal transition, Serpentine River, BC, Canada. Sedimentary Geology
Dataset comprises 
1)	Coordinates of 13 boxcores and 15 grab samples at the studied translating point bar are listed. The positions of the boxcores in the lower, middle and upper intertidal zone are indicated. Grab samples were collected from the subtidal zone of the bar. The approximate vertical position of each sample station is given relative to NAD83(CSRS) 4.0.0.BC.1.GVRD 2005-04-05 (horizontal datum).
2)	Raw data of grain size analyses are part of this dataset. Grain size analyses were conducted on 2-3 samples per boxcore and each grab sample. Samples were analyzed using a Malvern Mastersizer Hydro 2000 with a fluid accessory. Results are given in µm. Treatment of samples prior to processing them for grain size analysis is described by Czarnecki et al., (2014). Sieve data are given in mm.
3)	Total organic carbon content (wt%) was measured for 2-3 samples per boxcore and each grab sample, using the Loss-on-Ignition method described by Heiri et al., (2001).
4)	Size-diversity index (SDI) calculations were conducted following the method described by Hauck et al., (2009). SDI is a value derived by multiplying the largest burrow diameter with the diversity of traces observed.
5)	Macrobenthos population counts were conducted for each station in the intertidal zone. Genus and species as well as their abundances at each station are made available.
6)	Salinity (‰) was measured with a digital refractometer at the landward side of the bar and the seaward side of the bar. Date, time and coordinates of the salinity measurement locations are documented.

References: 
Czarnecki, J.M., Dashtgard, S.E., Pospelova, V., Mathewes, R.W., MacEachern, J.A., 2014. Palynology and geochemistry of channel-margin sediments across the tidal-fluvial transition, lower Fraser River, Canada: Implications for the rock record. Marine and Petroleum Geology 51, 152–166.
Hauck, T.E., Dashtgard, S.E., Pemberton, S.G., Gingras, M.K., 2009. Brackish-water ichnological trends in a microtidal barrier island-embayment system, Kouchibouguac National Park, New Brunswick, Canada. Palaios 24, 478–496.
Heiri, O., Lotter, A., Lemcke, G., 2001. Loss on ignition  as a method for estimating organic and carbonate content in sediments: Reproducibility and comparability of results. Journal of Paleolimnology 25, 101–110.
DOI: 10.17632/h5hnc3v8d6
title: VR study exp 2 phase I and II data analysis

description: The aim of this study was to compare a virtual reality (VR) training program to a standard surgical guide training program (SG) for a simulated tibial shaft intramedullary nail (IMN) procedure. 20-first and second-year novice medical students were recruited and randomized to VR(n=10) and SG(n=10) training groups. Participants were then evaluated by a blinded attending surgeon performing simulated tibial IMN procedure immediately after training (Phase-1) and again 2-weeks later (Phase-2) using a procedure-specific checklist and 5-point global assessment scale. Phase-1 was completed by all participants; 17 participants returned to complete Phase-2 VR(n=8), SG(n=9). Global assessment scores were significantly higher for VR than SG groups in all categories and in aggregate (p=0.003), as were the percentage of steps completed correctly (63% vs. 25%, p=0.002). The VR group showed a higher percent improvement in global assessment scores between Phase-1 and Phase-2 of the experiment, which was significant for knowledge of instruments (50% vs. 11%, p=0.01). All statistical analysis was performed using GraphPad Prism Statistics / Data Analysis software (GraphPad Software Inc., La Jolla, CA) using non-parametric tests. The performance of the Surgical Guide and Virtual Reality groups were compared using the Mann-Whitney U test for each section of the Global Assessment 5-Point Rating Scale and Fischer’s Exact test for the number of students able to complete each step of the Procedure-Specific Checklist. A p-value &lt; 0.05 was considered statistically significant.
DOI: 10.17632/k9ds9hmd9j
title: Data for: Chemical weathering along a one-million-year soil age gradient on the Galápagos Islands

description: Raw data for all tables and figures in the manuscript "Chemical weathering along a one-million-year soil age gradient on the Galápagos Islands" by Zehetner et al.
DOI: 10.17632/mskwggm4tx
title: The mechanosensitive TRPV4 is required for crystal-induced inflammation

description: The original data for all figures and supplement figures
DOI: 10.17632/p27ybhk8ms
title: Development and Evaluation of Search Tasks, LEAP Group, Oxford University

description: We worked with the Local Electron Atom Probe (LEAP) group at the Materials Science Department of Oxford university to both devise and carry out search taks for Information Retreival studies for the RDM Research Data Search product development. Our start point for doing this was a framework of learning objectives and cognitive complexity, outlined and discussed in a paper by Diane Kelly. This framework was then used to try and define objective task complexity ratings, by using the learning objectives, required outcomes and mental activities involved in completing the tasks. This was done by questioning of the participants. In effect, the participants helped us define the tasks, shortly before carrying them out. As the cognitive processes required are cumulative, more processes equals greater complexity. We ended up with five levels of cognitive complexity. For search task evaluation and study, participants were first asked to complete a pre-task questionnaire. This contained questions about participants' interest in and knowledge of the task, and subjective questions about perceived task complexity. There were also subjective questions about expected task difficulty, in relation to specific expectations of presumed challenges associated with completing the task, e.g. evaluating the results and determining when they had enough information to stop. The post-task questionnaire contained similar items to the pre-task questionnaire, with the aim of comparing expectations with experience. Additionally there were questions about enjoyment and engagement, and some overall judgements around difficulty and satisfaction. Participants' search behaviours were logged manually with real time observation and repeated analysis of recordings. The values were averaged and reported by cognitive complexity level. The participants were 12 members of the LEAP group based in Oxford. We will revisit to test the same tasks on DataSearch when we have suitable and enriched matching data.
DOI: 10.17632/p7d5b4vbrh
title: Denny Dowd IOB 2022 Supplemental Information

description: Supplemental data for the article: Denny MW and Dowd WW. (2022) Elevated salinity rapidly confers cross-tolerance to high temperature in a splash-pool copepod. Integrative Organismal Biology (in review)
DOI: 10.17632/phshjzznxn
title: Concordance Rates among Dermatopathologists and Mohs Micrographic Surgeons in Frozen Section Mohs Slides

description: This data is part of a systemic review of the literature to assess concordance between Mohs surgeons and dermatopathologists for frozen sections obtained during the Mohs procedure. Nine retrospective studies interpreting 11,920 slides were included; nearly all studies took place in an academic setting with Mohs fellowship-trained surgeons and fellows. Tumors included were basal cell carcinoma, squamous cell carcinoma, sebaceous carcinoma, mucinous carcinoma, and melanoma. Of the 11,920 slides included, 37 discordant slides were reported. Nearly half of these cases involved Mohs surgery diagnosing tumor present, where dermatopathology reported this as tumor free. The discordant reads may have occurred due to the Mohs surgeons misidentifying a thick cut as tumor positive or misidentifying inflammation as tumor.  Overall, this systematic literature review reveals a high concordance rate between Mohs surgeons and dermatopathologists, particularly amongst fellowship-trained Mohs surgeons at academic institutions.
DOI: 10.17632/pktk8vbfmp
title: MCI subgroups and risk of AD

description: SPSS dataset with data for 81 MCI groups from 33 studies. It includes type of group (amnestic vs. non-amnestic and single- vs. multiple domain MCI), and a number of variables used as a covariates in the meta-analysis. Some of these covariates are related to potential sources of bias.
DOI: 10.17632/rxzpf7453c
title: LpPb and dPb dataset for 'Glacier-derived particles as a regional control on marine dissolved Pb concentrations'

description: The file contains labile particulate Pb (LpPb) contents of selected sediment samples from Svalbard and Greenland areas, and variation of dissolved Pb (dPb) concentrations in resonse to different conditions of sediment load, inubation time and temperatures during incubation of these sediments in aging seawater. LpPb for sediment samples was determined following a 2 hour weak acid leach (Berger et al., 2008). dPb concentration was determined as per Rapp et al., (2017) with calibration via standard addition. This dataset is submitted for Jana Krause, Xunchi Zhu, Juan Höfer, Eric P. Achterberg, Anja Engel, Lorenz Meire, Alice E. Stuart-Lee, Mark J. Hopwood*, Glacier-derived particles as a regional control on marine dissolved Pb concentrations.
DOI: 10.17632/s4y6y7vz94
title: Raw spectrum data for untargeted metabolome of the rat mammary cancer model

description: Raw spectrum data for untargeted metabolomics of the fecal matters obtained from the rat mammary cancer model
DOI: 10.17632/tjr2g23t6s
title: Microarray Data for Rice

description: NCBI Gene Expression Omnibus GEO (https://www.ncbi.nlm.nih.gov/geo/)
Repository name: NCBI BioProject PRJNA681396
Data identification number:  
GEO accession GSE162302
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162302
GSM4948814 Prasanna_Seedlings-Shoot_0_1 [NMA1] 
GSM4948815 Prasanna_Seedlings-Shoot_0_2 [NMA2]
GSM4948816 Prasanna_Seedlings-Shoot_100_1 [NMA3]
GSM4948817 Prasanna_Seedlings-Shoot_100_2 [NMA4]
GSM4948818 Varadhan_Seedlings-Shoot_0_1 [NMA5]
GSM4948819 Varadhan_Seedlings-Shoot_0_2 [NMA6]
GSM4948820 Varadhan_Seedlings-Shoot_100_1 [NMA7]
GSM4948821 Varadhan_Seedlings-Shoot_100_2 [NMA8]
GEO accession GSE162412
www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE162412
GSM4951206	Prasanna_Seedlings-Root_0 [NMA9]
GSM4951207	Prasanna_Seedlings-Root_100_1[NMA11]
GSM4951208	Prasanna_Seedlings-Root_100_2 [NMA12] 
GSM4951209	Varadhan_Seedlings-Root_0 [NMA14]
GSM4951210	Varadhan_Seedlings-Root_100_1[NMA15]
GSM4951211	Varadhan_Seedlings-Root_100_2 [NMA16]
DOI: 10.17632/vgb4rcsspf
title: Dataset of response characteristics of H2-producing bacteria consortium to β-Lactams, Aminoglycosides, Macrolides, Quinolones antibiotics

description: Antibiotics on H2 producing bacteria shall be considered as being one of the critical element in biological H2 production utilizing livestock manure as raw resources. Despite the fact that the manure stands an significance role in bio-fermentation, the possibility of antibiotics being contained in excreta shall not be eliminated. Findings of whether the above saying might threaten the safety of bio-H2 production needs to be further studied. The experiment subjects include: six single and three combined antibiotics were tested and analyzed by the application of the gradient experiment method. Along with the The H2 production rate, CHO content, pH and OD600 were used to analyze the effects of various antibiotics introduction on the hydrolysis, fermentation and H2 production. To a further extent, Four typical representative samples were selected for biodiversity analysis from the single antibiotic experiment groups. Amounting more than 6000 pieces of data were obtained in a series of experiments. Data suggested that remarkable measure of antibiotics have various degrees of H2 production inhibition, while some antibiotics, Penicillin G, Streptomycin Sulfate, and their compound antibiotics, could promote the growth of Ethanoligenens sp. and improve H2 yield in the contrary. Correspondent to the transition of key metabolic intermediates and end products, the mechanism of each antibiotic type and dose on H2 production were summarized as follows: the main inhibitory mechanisms were: (1) board-spectrum inhibition, (2) partial inhibition, (3) H2 consumption enhancement; and the enhancement mechanisms were: (1) enhance the growth of H2-producing bacteria, (2) enhanced starch hydrolysis, (3) inhibitory H2 consumption or release of acid inhibition. Meanwhile, data analysis found that the effect of antibiotics on H2 producing was not only related to type, but also to dosage. Even one kind of antibiotic may have completely opposite effects on H2-producing bacteria under different dosage conditions. Inhibition of H2 yield was highest with Levofloxacin at 6.15 mg/L, gas production was reduced by 88.77%; and enhancement of H2 yield was highest with Penicillin G at 7.20 mg/L, the gas production increased by 72.90%.
DOI: 10.17632/wbhs5hkx49
title: Data from: Combined exposure to elevated temperature and deposited sediment reveals contrasted early life responses among Southernmost arctic charr populations
DOI: 10.17632/22gcpbbfb9
title: Proximate composition

description: The percentage content of ash, fat protein, fibre and carbohydrate in the wild edible mushroom, namely, Podaxis pistillaris (PP) and Termitomyces heimii (TH).
DOI: 10.17632/3fyrzd87wx
title: Data for: Analogous computations in working memory input, output and motor gating: Electrophysiological and computational modeling evidence

description: clean and epoched EEG data used for the EEG analyses. Raw behavior data
DOI: 10.17632/498bdcvvkz
title: LINF_190021100

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/5jmwrv2c57
title: Data for: Does Trading Behaviour Converge across Commodity Markets? Evidence from the Perspective of Hedgers’ Sentiment

description: Data
DOI: 10.17632/65kv687spt
title: RGD adsorption on titania surfaces

description: CASA XPS .vms files and other XPS raw data. Data file Summary: 1mgmL_RGD_20 (non-rinsed RGD) 1mgmL_RGD (non-rinsed RGD) 1mgmLRGD_washedtwice (rinsed-RGD) 0.01mgmL (non-rinsed RGD lower concentration) clean_exposedtoN (Clean sample vented to N2 in load lock) clean_exposedtoNandwater (Clean sample vented to N2 and exposed to droplet of water in load lock) dose1_catechol (Catechol, no RGD) dose2_catechol (Catechol, no RGD) clean_venttoN_2waterdrop (Hydrophobic droplet on clean surface) dose3_catechol_ventandwet (Hydrophilic droplet on Catechol) catechol_1mgmLRGD (Catechol + RGD) catechol_1mgmLRGD_20 (Catechol + RGD) catechol_1mgmLRGD_2wash (Catechol + RGD rinsed) catechol_1mgmLRGD_2wash_20 (Catechol + RGD rinsed) catechol_0.01mgmLRGD (Catechol + RGD lower concentration) catechol_0p01mgmLRGD_20 (Catechol + RGD lower concentration) RGDSLS_SLActive_xps.vms (Ti substrate models.)
DOI: 10.17632/6hnzfv5p42
title: Differentially expressed peptides between endometrial cancer tissues and normal endometrial tissues

description: Malignant cancers are characterized by metabolic reprogramming, including glycolysis, lipid oxidation, and proteostasis. Protein expression and degradation levels fluctuate dramatically during tumorigenesis, and aberrant protein homeostasis contributes to most of biological events in tumor evolution, while little information has been explored about the degraded protein fragments in endometrial cancer progression. Therefore, in this study, we aimed to systematically analyze the peptidome characters of i-TRAQ labeled endometrial carcinoma by using targeted LC-MS/MS. We included three endometrial carcinoma inpatients and three age-paired non-endometrial carcinoma inpatients in the study. Endometrial carcinoma was diagnosed by examining surgical specimens, and pathological validation was performed based on the International Federation of Gynecology and Obstetrics (FIGO) guidelines. Following sample preparation, the peptides were extracted, purified, and labeled, after which the analyses were performed. The results of liquid chromatography-tandem mass spectrometry revealed that approximately 874 peptides might be involved in endometrial carcinoma tumorigenesis.
DOI: 10.17632/8js7m95hjx
title: Data for: Orientation in Perpetuity: An Online Clinical Decision Support System for Surgical Residents

description: Materials and Methods An internally-developed, web-based CDSS including essential, clinically useful documents was created for use by trainees on a busy pediatric surgery service. A standardized orientation was provided to each resident and fellow upon joining the service, complemented by a summary card to be attached to the trainee’s ID badge. CDSS usage was monitored using web analytics. Trainees who rotated before and after the CDSS launch were surveyed regarding attitudes toward clinical resources and confidence in patient management. Results Documents published to the CDSS included 33 clinical guideline documents and 207 additional educational and support files including reference materials from service orientation were made available to trainees and staff. Goals for resident usage were established by evaluation and adaptation of early traffic patterns. Analysis of web traffic collected over 14 consecutive months revealed utilization above target levels, with 4.0 average weekly page views per trainee (IQR: 1.6-5.6). A total of 60 survey responses were received (54% of trainees invited); majorities of rotating trainees and survey respondents were trainees in general surgery and most were interns. Mean composite scores reflected a trend toward improved satisfaction when seeking CDSM (pre-intervention 3.18 [SD 0.73], post-intervention 3.92 [SD 0.70], range 1-5) which was statistically significant (p=0.005). Mean scores also improved across five out of six components of the composite score (mean improvement 0.75, range: 0.53-0.92), four of which were statistically significant (p=0.001-0.038). A majority (59%) of respondents reported that they used the CDSS frequently. The raw data and analysis products are supplied here.
DOI: 10.17632/9g6236p5tf
title: HBV-SIM method project supplementary table 1-6

description: HBV-SIM method project supplementary table 1-6
DOI: 10.17632/9s3b5m76n6
title: Interaction of CD46 protein with SARS-CoV-2 structural proteins

description: Computational models of CD46 protein's interactions with SARS-CoV-2 structural proteins
DOI: 10.17632/bt47cnkyc7
title: Data for: Microstructure and corrosion resistance of the PEO coating on extruded Al6Cu alloy

description: Original data has been presentedin figure file
DOI: 10.17632/dmfnvpyb7h
title: Urbanismos epidémicos

description: Images from "Epidemic Urbanism. The medicalization of urban life in Montevideo in the 20th century."
DOI: 10.17632/g68gf7ky2z
title: Data for: Hysterectomy and sexual (dys)function: An analysis of sexual dysfunction after hysterectomy and a search for predictive factors

description: Abstract Objectives Research about sexual function after hysterectomy is inconclusive. Possible predictive factors for sexual (dys)function are yet to be identified. The aim of this study is to assess the effect of hysterectomy on sexual function in women 3 and 12 months after hysterectomy for benign indications. Furthermore hypothesized predictive factors will be evaluated. Methods A prospective multicentre cohort study with follow-up at 3 and 12 months after hysterectomy was performed. To assess sexual function a short-form FSFI was used, a score ≤ 19 means sexual dysfunction). Linear mixed model repeated measure analysis was used to assess changes in sexual function in women who were sexually active at all three measure points (N=260). Linear mixed model analyses were also used for the predictor analyses. Results The FSFI score increased from 20.94 at baseline to 23.81 at 12 months post hysterectomy. The number of women experiencing sexual dysfunction was 86 (33.1%). Women without preoperative sexual dysfunction had a significantly higher FSFI score 4.5 (95% CI 3.5-5.6) one year after the operation than women indicating sexual dysfunction before surgery. Women who were living alone had a significantly higher FSFI score of 2.31 (0.7-4.0) when compared to women who were married or living together. Conclusion FSFI score increases significantly after hysterectomy, which indicates a better sexual function after the operation. Sexual dysfunction before hysterectomy (FSFI score ≤ 19) and being married or living together are predictive factors for a lower FSFI score post hysterectomy.
DOI: 10.17632/j3ggs2c5h8
title: Data for: Co(II)-catalyzed decarboxylation of itaconic acid engendering methacrylic acid and Co(II)-MOFs for structure regulated fluorescent detection of cations

description: I am working on Organic/Inorganic systems for Coordination chemistry, structural studies, Opticalo studies, sensing (multichannel) and catalysis etc.
DOI: 10.17632/m2sryjcsp3
title: Data for: Ediacaran-Ordovician landscape of eastern South China: constraints from sedimentary indices and detrital zircon U-Pb-Hf isotopes from the southeastern margin of the Yangtze Block

description: Supplementary Table S1 is the analytical data of LA-ICP-MS U-Pb dating for detrital zircons from northern Jiangshan of northwest Zhejiang in the southeastern margin of the Yangtze Block. Supplementary Table S2 is the analytical data of Hf isotopes for detrital zircons from northern Jiangshan of northwest Zhejiang in the southeastern margin of the Yangtze Block.
DOI: 10.17632/pnkg2mttk7
title: Molecular Simulations of Adsorption of Micelles of a Model Corrosion Inhibitor on Partially or Fully Covered Iron Surfaces

description: Molecular simulations to study how corrosion inhibitor micelles adsorb at iron-water interfaces. Adsorption free energy profiles as well as molecular dynamics simulation scripts are shared.
DOI: 10.17632/r5tdy9cm3x
title: Compost design

description: This data set presents supplementary material to Monroy, Oscar; Saucedo, Gerardo; Espinosa, Ruben (2020) Composting a digestate from the organic fraction of urban solid wastes (OFUSW), Revista Mexicana de Ingeniería Química. An interesting design approach to prepare a balanced composting mass is proposed based on the carbon to nitrogen ratio (C/N) and the minimum required inert material to promote aeration. By using Scheffe’s simplex centroid method to design an optimum mixture of three components (digestate, fresh OFUSW and sawdust), using two regression equations for two process variables (C/N and volatile solids), a solution is obtained for a compost with the adequate C/N for a biosolid and the highest organic matter degradation efficiency. This data set contains the diagrams (figures S1 and S2) of the experimental rigs (lab scale and bench scales compost reactors), describing air circulation, mixing and heating devices. Table S1 shows the elemental analysis (C, N and H; O is reported as the difference from the total) and the C/N of the initial compost components. Ten mixtures were prepared to yield a C/N between 25 and 35 and set to compost. The resulting C/N and volatile solids loss due to the composting process are shown in Table S2. From these results, two regression equations were obtained using PASW Statistics 18 software, which generated table S3 and the contour levels of the tricomponents plot (figure S3). Three of these initial mixtures tried in a 95 L bench scale compost batch reactor. The resulting compost was tested for toxicity with the germination index. The results of three different reactor runs were tried by triplicate with ten seeds each are shown in table S4.