cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11378034
title: MOESM1 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 1. GST protein sequences of wheat, rice and Arabidopsis used to construct the phylogenetic tree.
DOI: 10.6084/m9.figshare.19766135.v1
title: Additional file 3 of Single-cell landscape of immunocytes in patients with extrahepatic cholangiocarcinoma

description: Additional file 3. Table S1. The information of ECCA patients.
DOI: 10.6084/m9.figshare.17162967.v1
title: Additional file 10 of Public transcriptome database-based selection and validation of reliable reference genes for breast cancer research

description: Additional file 10: Table S8. P-value of t-test of target gene expression levels between different 7 levels of BC cell strain samples.
DOI: 10.6084/m9.figshare.14001149
title: Global Survey of Electron Precipitation due to Hiss Waves in the Earth’s Plasmasphere and Plumes

description: This is the dataset for the paper 'Global Survey of Electron Precipitation due to Hiss Waves in the Earth’s Plasmasphere and Plumes', which is submitted to Geophysical Research Letters.
DOI: 10.34740/kaggle/dsv/7663463
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.6084/m9.figshare.9764687
title: Extraction and separation of acetanilide herbicides in beans based on metal-organic framework MIL-101 (Zn) as sorbent

description: An extraction method based on metal-organic framework has been developed and applied to acetanilide herbicides, including metazachlor, propanil, pretilachlor, and butachlor, in black beans, red beans, and kidney beans. The acetanilide herbicides are extracted with a mixture of ethyl acetate and n-hexane. The extract solution is absorbed and purified with metal-organic framework MIL-101 (Zn). The separation and determination of four acetanilide herbicides were implemented by high-performance liquid chromatography. The experimental parameters were evaluated by a univariate method and orthogonal experiments. The presented method can obtain effective extraction and purification. The detection limits for metazachlor, propanil, pretilachlor, and butachlor were 0.58, 0.90, 1.78 and 1.18 µg/kg, respectively. The average recoveries of the acetanilide herbicides at spiked concentrations of 10, 50, and 100 µg/kg ranged from 86.9% to 119.0%, and relative standard deviations were equal to or lower than 2.80%.
DOI: 10.6084/m9.figshare.9764687.v1
title: Extraction and separation of acetanilide herbicides in beans based on metal-organic framework MIL-101 (Zn) as sorbent

description: An extraction method based on metal-organic framework has been developed and applied to acetanilide herbicides, including metazachlor, propanil, pretilachlor, and butachlor, in black beans, red beans, and kidney beans. The acetanilide herbicides are extracted with a mixture of ethyl acetate and n-hexane. The extract solution is absorbed and purified with metal-organic framework MIL-101 (Zn). The separation and determination of four acetanilide herbicides were implemented by high-performance liquid chromatography. The experimental parameters were evaluated by a univariate method and orthogonal experiments. The presented method can obtain effective extraction and purification. The detection limits for metazachlor, propanil, pretilachlor, and butachlor were 0.58, 0.90, 1.78 and 1.18 µg/kg, respectively. The average recoveries of the acetanilide herbicides at spiked concentrations of 10, 50, and 100 µg/kg ranged from 86.9% to 119.0%, and relative standard deviations were equal to or lower than 2.80%.
DOI: 10.6084/m9.figshare.7185728.v1
title: SELECTIVE CHLORINATION OF GLYCEROL TO 3-CHLORO-1,2-PROPANEDIOL CATALYZED BY BRØNSTED ACIDIC IONIC LIQUIDS

description: Abstract Brønsted acidic ionic liquids composed of 1-butyl-3-methylimidazolium, triethylbutylammonium, and 1-butylpyridinium cation counterparts and HSO4‾ and H2PO4‾ anion counterparts were used as the catalysts for the selective chlorination of glycerol with hydrogen chloride to 3-chloro-1,2-propandiol. From the perspective of the glycerol conversion and product yields, the catalytic activities of the ionic liquids containing HSO4‾ were higher than the ionic liquids containing H2PO4‾. As compared with the carboxylic acid catalysts, Brønsted acidic ionic liquids favored the catalytic chlorination of glycerol to 3-chloro-1,2-propandiol. When the glycerol chlorination was catalyzed by the Brønsted acidic ionic liquids at 110 ºC for 12 h with the catalyst loading of 0.75 mol·kg‾1 glycerol, the 3-chloro-1,2-propandiol yield was more than 81% at the complete conversion of glycerol.
DOI: 10.6084/m9.figshare.5612881.v1
title: Recycling of palaeo-Pacific subducted oceanic crust related to a Fe–Cu–Au mineralization in the Xu-Huai region of North Anhui-Jiangsu, East China: Geochronological and geochemical constraints

description: In this study, Early Cretaceous skarn deposits and genesis of their host diorite/monzodiorite porphyry in the Xuzhou-Huaibei (Xu-Huai) region, northern Anhui-Jiangsu have been discussed by detailed geochemical work. In-situ zircon U–Pb dating of the diorites related to Fe–Cu–Au deposits shows that they were formed between 131.4 ± 1.5 Ma and 130.8 ± 1.8 Ma. Geochemical data indicate a depletion of high field strength elements (HFSE) in the diorite porphyry with similarity to that of arc-related igneous rocks. The diorite porphyry was probably derived from typical arc magmas related to continental margin subduction characterized by light rare earth elements (LREEs) enrichment and HFSE depletion. REEs compositions of apatite in the diorite porphyry indicate that the dioritic magma was produced from the metasomatized subcontinental mantle by slab-derived fluids. The magma was proven to be a high oxygen fugacity; thus, it was particularly conducive to the precipitation of Fe, Cu, Au and other ore-forming elements. The δ<sup>34</sup>S values of pyrite and chalcopyrite of Fe–Cu–Au ores range from −0.2‰ to 2.8‰, indicating that the sulphur in the ore was probably derived from deep-seated magmas. Integrated with geochronological and geochemical analyses, we suggest that the Early Cretaceous igneous suites associated with Fe–Cu–Au deposits in the Xu-Huai region are related to recycling subduction of Pacific oceanic crust.
DOI: 10.6084/m9.figshare.11378040
title: MOESM2 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 2. The detailed information of 330 TaGST genes. The information of 330 TaGST genes including gene name, accession number, chromosomal location, phylogenetic cluster, MW and PI was displayed.
DOI: 10.6084/m9.figshare.19242352.v1
title: Additional file 4 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 4: Table S4. Summary details of assembled sequences produced by Trinity.
DOI: 10.6084/m9.figshare.19242322.v1
title: Additional file 12 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 12: Table S10. Correlation coefficients between qRT-PCR and RNA-Seq results for selected 12 genes.
DOI: 10.6084/m9.figshare.19242370
title: Additional file 7 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 7: Table S6. 8371 unigenes mapped to EC numbers in 119 KEGG pathways.
DOI: 10.6084/m9.figshare.17162967
title: Additional file 10 of Public transcriptome database-based selection and validation of reliable reference genes for breast cancer research

description: Additional file 10: Table S8. P-value of t-test of target gene expression levels between different 7 levels of BC cell strain samples.
DOI: 10.6084/m9.figshare.19242328
title: Additional file 13 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 13: Table S11. Fatty acid composition in Saccharomyces cerevisiae cells overexpressing VgFAD2-like when cultured in the medium with addition of exogenous C18:2 or C18:3.
DOI: 10.6084/m9.figshare.19242358.v1
title: Additional file 5 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 5: Table S5. Summary of functional annotations.
DOI: 10.6084/m9.figshare.19242382
title: Additional file 9 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 9: Table S7. Significantly enriched GO terms from differentially expressed genes.
DOI: 10.6084/m9.figshare.11378022
title: MOESM11 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 11. The expression levels of TaGST genes under abiotic and biotic stress treatments. The figures represented the TPM ratios of treatment to control groups.
DOI: 10.6084/m9.figshare.11378028
title: MOESM12 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 12. Primers used for qRT_PCR.
DOI: 10.6084/m9.figshare.11378055
title: MOESM5 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 5. The cis-elements in promoter region of 330 TaGST genes. A total of 15 cis-elements have been identified in TaGST gene promoter regions related to hormones, light, growth and development, and denfens and stress responses.
DOI: 10.6084/m9.figshare.11378067.v1
title: MOESM8 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 8. Ka/Ks ratios of segmental duplication TaGST genes.
DOI: 10.6084/m9.figshare.11378040.v1
title: MOESM2 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 2. The detailed information of 330 TaGST genes. The information of 330 TaGST genes including gene name, accession number, chromosomal location, phylogenetic cluster, MW and PI was displayed.
DOI: 10.6084/m9.figshare.11378061.v1
title: MOESM6 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 6. The distribution of TaGST genes on wheat chromosomes.
DOI: 10.6084/m9.figshare.11378079
title: MOESM9 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 9. Syntenic relationships of GST genes between wheat and rice. The information of TaGST genes and OsGST genes with syntenic relationships including gene name, gene ID, chromosomal number and locations was listed.
DOI: 10.6084/m9.figshare.11378079.v1
title: MOESM9 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 9. Syntenic relationships of GST genes between wheat and rice. The information of TaGST genes and OsGST genes with syntenic relationships including gene name, gene ID, chromosomal number and locations was listed.
DOI: 10.6084/m9.figshare.19242382.v1
title: Additional file 9 of Critical metabolic pathways and genes cooperate for epoxy fatty acid-enriched oil production in developing seeds of Vernonia galamensis, an industrial oleaginous plant

description: Additional file 9: Table S7. Significantly enriched GO terms from differentially expressed genes.
DOI: 10.6084/m9.figshare.11902335.v1
title: LncRNA PEAMIR inhibits apoptosis and inflammatory response in PM2.5 exposure aggravated myocardial ischemia/reperfusion injury as a competing endogenous RNA of miR-29b-3p

description: The sensitivity of myocardium is enhanced to ischemia/reperfusion (I/R) injury under PM2.5 exposure. It is still under prelude for lncRNA-miRNA pair in the study of aggravated myocardial I/R injury under PM2.5 exposure. In this study, we first built a rat model of 30 min ischemia and 24 h reperfusion followed PM2.5 (6.0 mg/kg) exposure. We found PM2.5 exposure could obviously aggravate I/R injury in the fields of myocardium damage, apoptosis levels and cardiac function which were evaluated by TTC staining, TUNEL and echocardiography, respectively. Then, based on results of sequencing and RT-qPCR, we selected NONRATT003473.2 in the follow-up experiments and named this lncRNA as PM2.5 exposure aggravated myocardial I/R injury lncRNA (PEAMIR). Consistent with the results rat model, we confirmed PEAMIR to be a protective lncRNA against PM + HR triggered damages in H9c2 cells. Next, according to the bioinformatics analysis from miRanda database and a series of gain- and loss-of-function experiments, we proved PEAMIR to be a ceRNA for miR-29b-3p to inhibit cardiac inflammation and apoptosis. Finally, using Target-Scan database, the conserved binding sites for miR-29b-3p was identified in the 3’UTR of PI3K (p85a), a key protein of apoptosis. Our subsequent experiments validated the regulatory relationship between PEAMIR-miR-29b-3p ceRNA pair and PI3K (p85a)/Akt/GSK3b/p53 cascade pathway. In conclusion, our study demonstrated the role and mechanism of PEAMIR in the augment of I/R injury under PM2.5 exposure, suggesting a promising strategy for the prevention and treatment of I/R injury under PM2.5 exposure.
DOI: 10.6084/m9.figshare.11378052
title: MOESM4 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 4. The coding sequences of 330 TaGST genes.
DOI: 10.6084/m9.figshare.11378169
title: MOESM4 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 4: Table S4. Spreadsheet of genes commonly regulated by MtPHD6 transgene and drought stress
DOI: 10.6084/m9.figshare.11378052.v1
title: MOESM4 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 4. The coding sequences of 330 TaGST genes.
DOI: 10.6084/m9.figshare.19766133
title: Additional file 5 of Identification of mutation patterns and circulating tumour DNA-derived prognostic markers in advanced breast cancer patients

description: Additional file 5. Original sequencing data including IHC type of all patients, SNVs, CNVs, and ctDNA fraction and bTMB of baseline plasma, SNVs and CNVs of plasma samples used for disease monitoring, and SNVs and CNVs of tissue samples. IHC, immunohistochemistry; SNVs, single nucleotide variations; CNVs, copy number variations; bTMB, blood-based tumor mutation burden.
DOI: 10.6084/m9.figshare.19766157
title: Additional file 2 of High-resolution detection of quantitative trait loci for seven important yield-related traits in wheat (Triticum aestivum L.) using a high-density SLAF-seq genetic map

description: Additional file 2.
DOI: 10.6084/m9.figshare.19766157.v1
title: Additional file 2 of High-resolution detection of quantitative trait loci for seven important yield-related traits in wheat (Triticum aestivum L.) using a high-density SLAF-seq genetic map

description: Additional file 2.
DOI: 10.6084/m9.figshare.11378055.v1
title: MOESM5 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 5. The cis-elements in promoter region of 330 TaGST genes. A total of 15 cis-elements have been identified in TaGST gene promoter regions related to hormones, light, growth and development, and denfens and stress responses.
DOI: 10.6084/m9.figshare.11378175.v1
title: MOESM5 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 5: Table S5. Spreadsheet of genes for MapMAN pathway analysis.
DOI: 10.6084/m9.figshare.11378061
title: MOESM6 of Genome-wide identification and expression profiling of glutathione transferase gene family under multiple stresses and hormone treatments in wheat (Triticum aestivum L.)

description: Additional file 6. The distribution of TaGST genes on wheat chromosomes.
DOI: 10.6084/m9.figshare.7708070
title: The <i>Cedrus</i>-associated truffle <i>Trappeindia himalayensis</i> is a morphologically unique and phylogenetically divergent species of <i>Rhizopogon</i>

description: In the northwestern Himalayan mountains of India, the hypogeous sequestrate fungus <i>Trappeindia himalayensis</i> is harvested from forests dominated by the ectomycorrhizal tree <i>Cedrus deodara</i> (Himalayan cedar). This truffle has basidiospores that are ornamented with raised reticulation. The original description of <i>Trappeindia himalayensis</i> suggested that the gleba of this species is similar to young specimens of <i>Scleroderma</i> (Boletales), whereas its basidiospores are ornamented with raised reticulation, suggesting a morphological affinity to <i>Leucogaster</i> (Russulales) or <i>Strobilomyces</i> (Boletales). Given this systematic ambiguity, we have generated DNA sequence data from type material and other herbarium specimens and present the first molecular phylogenetic analysis of this unusual <i>Cedrus</i>-associated truffle. Despite the irregular ornamented basidiospore morphology, <i>T. himalayensis</i> is resolved within the genus <i>Rhizopogon</i> (Suillineae, Boletales) and represents a unique lineage that has not been previously detected. All known <i>Rhizopogon</i> species possess an ectomycorrhizal trophic mode, and because of its placement in this lineage, it is likely that <i>Trappeindia himalayensis</i> is an ectomycorrhizal partner of <i>Cedrus deodara</i>. This study highlights the importance of generating sequence data from herbarium specimens in order to identify fungal biodiversity and clarify the systematic relationships of poorly documented fungi.
DOI: 10.6084/m9.figshare.7708070.v1
title: The <i>Cedrus</i>-associated truffle <i>Trappeindia himalayensis</i> is a morphologically unique and phylogenetically divergent species of <i>Rhizopogon</i>

description: In the northwestern Himalayan mountains of India, the hypogeous sequestrate fungus <i>Trappeindia himalayensis</i> is harvested from forests dominated by the ectomycorrhizal tree <i>Cedrus deodara</i> (Himalayan cedar). This truffle has basidiospores that are ornamented with raised reticulation. The original description of <i>Trappeindia himalayensis</i> suggested that the gleba of this species is similar to young specimens of <i>Scleroderma</i> (Boletales), whereas its basidiospores are ornamented with raised reticulation, suggesting a morphological affinity to <i>Leucogaster</i> (Russulales) or <i>Strobilomyces</i> (Boletales). Given this systematic ambiguity, we have generated DNA sequence data from type material and other herbarium specimens and present the first molecular phylogenetic analysis of this unusual <i>Cedrus</i>-associated truffle. Despite the irregular ornamented basidiospore morphology, <i>T. himalayensis</i> is resolved within the genus <i>Rhizopogon</i> (Suillineae, Boletales) and represents a unique lineage that has not been previously detected. All known <i>Rhizopogon</i> species possess an ectomycorrhizal trophic mode, and because of its placement in this lineage, it is likely that <i>Trappeindia himalayensis</i> is an ectomycorrhizal partner of <i>Cedrus deodara</i>. This study highlights the importance of generating sequence data from herbarium specimens in order to identify fungal biodiversity and clarify the systematic relationships of poorly documented fungi.
DOI: 10.6084/m9.figshare.9805424
title: Metadata record for: Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives

description: This dataset contains key characteristics about the data described in the Data Descriptor Small non-coding RNA transcriptome of four high-altitude vertebrates and their low-altitude relatives. <br>
 Contents: <br>
 
 1. human readable metadata summary table in CSV format
 
 
 2. machine readable metadata file in JSON format<br><br>Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.11378181.v1
title: MOESM6 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 6: Table S6. Spreadsheet of specific genes including ABA pathway related genes, zinc finger, AP2/ EREBP and WRKY transcription factors.
DOI: 10.6084/m9.figshare.11378163
title: MOESM3 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 3: Table S3. Spreadsheet of genes changed by drought stress or MtPHD6 transgene.
DOI: 10.6084/m9.figshare.11378169.v1
title: MOESM4 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 4: Table S4. Spreadsheet of genes commonly regulated by MtPHD6 transgene and drought stress
DOI: 10.6084/m9.figshare.15047682.v1
title: Additional file 2 of Genome-wide survey and expression analysis of NIN-like Protein (NLP) genes reveals its potential roles in the response to nitrate signaling in tomato

description: Additional file 2: Supplementary Table 2. One-to-one orthologous relationships between tomato and the other four plant species.
DOI: 10.6084/m9.figshare.15047599.v1
title: Additional file 4 of Insights into the molecular mechanisms of Huangqi decoction on liver fibrosis via computational systems pharmacology approaches

description: Additional file 4. Table S4. The glide gscores of cross docking.
DOI: 10.6084/m9.figshare.11378163.v1
title: MOESM3 of Ectopic expression of Medicago truncatula homeodomain finger protein, MtPHD6, enhances drought tolerance in Arabidopsis

description: Additional file 3: Table S3. Spreadsheet of genes changed by drought stress or MtPHD6 transgene.