cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.1184/r1/8276171
title: Bridges of Pittsburgh

description: The Bridges of Pittsburgh is a highly interdisciplinary and collaborative public-facing project that pays homage both to an innovative, field-defining mathematical problem and to one of the defining features of our city. We proposed to discover how many of Pittsburgh’s 446 bridges could be traversed without crossing the same bridge twice, in the process addressing issues in processing crowdsourced GIS data, performing graph traversal with complex constraints, and using network analysis to compare communities formed by this road network to the historically-defined neighborhoods of Pittsburgh.<br>This ZIP file contains an RStudio project, with package dependencies bundled via packrat (https://rstudio.github.io/packrat/).<br><br>- The osmar/ directory contains OSM data, our processing code, and outputs used to generate the map at https://bridgesofpittsburgh.net <br>- 2019_final_community_analysis/ contains code and derived datasets for the community analysis portion of the projectwar<br>- The legacy/ directory contains experimental datasets and code from the earliest phase of this project, which were later superseded by the main pipeline in the osmar/ directory.<br>Each directory contains further README.md files documenting their structure.<br>
DOI: 10.1184/r1/8276171.v1
title: Bridges of Pittsburgh

description: The Bridges of Pittsburgh is a highly interdisciplinary and collaborative public-facing project that pays homage both to an innovative, field-defining mathematical problem and to one of the defining features of our city. We proposed to discover how many of Pittsburgh’s 446 bridges could be traversed without crossing the same bridge twice, in the process addressing issues in processing crowdsourced GIS data, performing graph traversal with complex constraints, and using network analysis to compare communities formed by this road network to the historically-defined neighborhoods of Pittsburgh.<br>This ZIP file contains an RStudio project, with package dependencies bundled via packrat (https://rstudio.github.io/packrat/).<br><br>- The osmar/ directory contains OSM data, our processing code, and outputs used to generate the map at https://bridgesofpittsburgh.net <br>- 2019_final_community_analysis/ contains code and derived datasets for the community analysis portion of the projectwar<br>- The legacy/ directory contains experimental datasets and code from the earliest phase of this project, which were later superseded by the main pipeline in the osmar/ directory.<br>Each directory contains further README.md files documenting their structure.<br>
DOI: 10.6084/m9.figshare.8276213.v1
title: Psychosocial and organizational determinants of safe food handling at retail and food service establishments: a systematic review and meta-analysis

description: Various psychosocial and organizational factors have been investigated as determinants of food handlers’ food safety behaviours. A systematic review and meta-analysis of studies in this area was conducted to identify and synthesize the key behavioural determinants. Standard systematic review steps were followed: comprehensive search strategy; relevance screening; article characterization; risk of bias assessment; data extraction; and random-effects meta-analysis. Sixty-two relevant studies were identified, and knowledge was the most commonly investigated behavioural determinant (<i>n</i> = 51). Increased knowledge was consistently associated with safe food handing behaviours across both correlation (<i>r</i> = 0.30; 95% confidence interval [CI]: 0.12, 0.46; <i>n</i> = 24 studies; <i>I</i><sup>2</sup> = 98%) and odds ratio (OR) measures (adjusted OR = 1.85; 95% CI: 1.27, 2.70; <i>n</i> = 3; <i>I</i><sup>2</sup> = 0%). Seven other behavioural determinant categories were also consistently associated with various food safety behaviour outcomes. In contrast, no association was found between food handler experience and behaviour. The findings can inform the development of targeted training initiatives for food handlers.
DOI: 10.6084/m9.figshare.8276123
title: Supplementary Material for: Unusual Etiology for Transaminitis

description: An infection with <i>Enterobius vermicularis</i> (pinworm) commonly affects the gastrointestinal (GI) tract. The ectopic localization of an enterobius infectious is rare, especially in the liver. We report the case of a 37-year-old man who presented to the gastroenterology clinic with abdominal pain and was found to have elevated transaminases. Workup for acute/chronic liver disease was unrevealing. He underwent endoscopic evaluation showing a live pinworm in the colon. He was treated with albendazole with improvement in GI symptoms and resolution of his transaminitis. There are scarce reports in the literature describing pathognomonic, clinical, imaging, and laboratory findings for pinworm infection. Here, we attempt to review the literature for hepatic involvement with an enterobius infection and discuss the findings via this case.
DOI: 10.6084/m9.figshare.8276123.v1
title: Supplementary Material for: Unusual Etiology for Transaminitis

description: An infection with <i>Enterobius vermicularis</i> (pinworm) commonly affects the gastrointestinal (GI) tract. The ectopic localization of an enterobius infectious is rare, especially in the liver. We report the case of a 37-year-old man who presented to the gastroenterology clinic with abdominal pain and was found to have elevated transaminases. Workup for acute/chronic liver disease was unrevealing. He underwent endoscopic evaluation showing a live pinworm in the colon. He was treated with albendazole with improvement in GI symptoms and resolution of his transaminitis. There are scarce reports in the literature describing pathognomonic, clinical, imaging, and laboratory findings for pinworm infection. Here, we attempt to review the literature for hepatic involvement with an enterobius infection and discuss the findings via this case.
DOI: 10.6084/m9.figshare.8276102
title: Additional file 2: of Introducing an assessment tool based on a full set of end-of-training EPAs to capture the workplace performance of final-year medical students

description: Student version (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8276102.v1
title: Additional file 2: of Introducing an assessment tool based on a full set of end-of-training EPAs to capture the workplace performance of final-year medical students

description: Student version (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8276099
title: Additional file 1: of Introducing an assessment tool based on a full set of end-of-training EPAs to capture the workplace performance of final-year medical students

description: Supversisor version (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8276099.v1
title: Additional file 1: of Introducing an assessment tool based on a full set of end-of-training EPAs to capture the workplace performance of final-year medical students

description: Supversisor version (XLSX 18 kb)
DOI: 10.6084/m9.figshare.8276087
title: Additional file 1: of Outbreak of scabies among preschool children, Accra, Ghana, 2017

description: Dataset for scabies outbreak. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.8276087.v1
title: Additional file 1: of Outbreak of scabies among preschool children, Accra, Ghana, 2017

description: Dataset for scabies outbreak. (XLSX 53 kb)
DOI: 10.6084/m9.figshare.8276048
title: MOESM3 of Are ladybird beetles (Coleoptera: Coccinellidae) affected by Bt proteins expressed in genetically modified insect-resistant crops? A systematic review protocol

description: Additional file 3. ROSES form.
DOI: 10.6084/m9.figshare.8276048.v1
title: MOESM3 of Are ladybird beetles (Coleoptera: Coccinellidae) affected by Bt proteins expressed in genetically modified insect-resistant crops? A systematic review protocol

description: Additional file 3. ROSES form.
DOI: 10.6084/m9.figshare.8276042
title: MOESM2 of Are ladybird beetles (Coleoptera: Coccinellidae) affected by Bt proteins expressed in genetically modified insect-resistant crops? A systematic review protocol

description: Additional file 2. Scoping exercise for validating the search string. This file contains the results of the scoping exercise that was performed with six electronic bibliographic databases to test and validate the search string.
DOI: 10.6084/m9.figshare.8276042.v1
title: MOESM2 of Are ladybird beetles (Coleoptera: Coccinellidae) affected by Bt proteins expressed in genetically modified insect-resistant crops? A systematic review protocol

description: Additional file 2. Scoping exercise for validating the search string. This file contains the results of the scoping exercise that was performed with six electronic bibliographic databases to test and validate the search string.
DOI: 10.6084/m9.figshare.8275937
title: Additional file 8: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S3. Normalized read counts of annotated miRNAs for each of 24 small RNA libraries corresponding to two treatments (control and heat), four replicates and three sampling time points (0, 1 and 4â days after treatment). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8275937.v1
title: Additional file 8: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S3. Normalized read counts of annotated miRNAs for each of 24 small RNA libraries corresponding to two treatments (control and heat), four replicates and three sampling time points (0, 1 and 4â days after treatment). (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8275925
title: Additional file 2: of Lineage-specific exosomes promote the odontogenic differentiation of human dental pulp stem cells (DPSCs) through TGFÎ˛1/smads signaling pathway via transfer of microRNAs

description: Table S2. All genes targeted by differentially expressed microRNAs were analyze by four publicly available bioinformatics tools (TargetScan, miRTarBase, miRDB, and miRWalk). (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8275925.v1
title: Additional file 2: of Lineage-specific exosomes promote the odontogenic differentiation of human dental pulp stem cells (DPSCs) through TGFÎ˛1/smads signaling pathway via transfer of microRNAs

description: Table S2. All genes targeted by differentially expressed microRNAs were analyze by four publicly available bioinformatics tools (TargetScan, miRTarBase, miRDB, and miRWalk). (XLSX 41 kb)
DOI: 10.6084/m9.figshare.8275913
title: Additional file 4: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S2. Conserved miRNA families, precursor sequence, structure, minimum free energy and star sequence information. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8275913.v1
title: Additional file 4: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S2. Conserved miRNA families, precursor sequence, structure, minimum free energy and star sequence information. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.8275895
title: Additional file 5 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script for producing the figures presented in this paper. (R 6 kb)
DOI: 10.6084/m9.figshare.8275898
title: Additional file 1: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S1 Sequencing and processing summary of the 24 small RNA libraries. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8275901
title: Additional file 6 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script demonstrating using the fastJT package for feature selection for machine learning based on data from CALGB 80303. (R 8 kb)
DOI: 10.6084/m9.figshare.8275892
title: Additional file 13: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S6. List of predicted interaction partners for degradome validated miRNA targets identified in rice (Oryza sativa) using STRING DB. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8275898.v1
title: Additional file 1: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S1 Sequencing and processing summary of the 24 small RNA libraries. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.8275889
title: Additional file 4 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script for comparing the empirical rejection rates between the JT method and the linear regression method. (R 2 kb)
DOI: 10.6084/m9.figshare.8275895.v1
title: Additional file 5 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script for producing the figures presented in this paper. (R 6 kb)
DOI: 10.6084/m9.figshare.8275901.v1
title: Additional file 6 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script demonstrating using the fastJT package for feature selection for machine learning based on data from CALGB 80303. (R 8 kb)
DOI: 10.6084/m9.figshare.8275883
title: Additional file 3 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script performing the benchmarking of the fastJT algorithm reported in this paper. (R 3 kb)
DOI: 10.6084/m9.figshare.8275886
title: Additional file 12: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S5. List of miRNA targets identified by degradome sequencing. (XLSX 598 kb)
DOI: 10.6084/m9.figshare.8275892.v1
title: Additional file 13: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S6. List of predicted interaction partners for degradome validated miRNA targets identified in rice (Oryza sativa) using STRING DB. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8275889.v1
title: Additional file 4 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script for comparing the empirical rejection rates between the JT method and the linear regression method. (R 2 kb)
DOI: 10.6084/m9.figshare.8275877
title: Additional file 2 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script verifying the accuracy of the fastJT package results compared to the examples in the literature. (R 1 kb)
DOI: 10.6084/m9.figshare.8275880
title: Additional file 11: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S4. List of miRNA differentially expressed after heat stress. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8275886.v1
title: Additional file 12: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S5. List of miRNA targets identified by degradome sequencing. (XLSX 598 kb)
DOI: 10.6084/m9.figshare.8275883.v1
title: Additional file 3 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script performing the benchmarking of the fastJT algorithm reported in this paper. (R 3 kb)
DOI: 10.6084/m9.figshare.8275877.v1
title: Additional file 2 of fastJT: An R package for robust and efficient feature selection for machine learning and genome-wide association studies

description: An R script verifying the accuracy of the fastJT package results compared to the examples in the literature. (R 1 kb)
DOI: 10.6084/m9.figshare.8275880.v1
title: Additional file 11: of MicroRNA-guided regulation of heat stress response in wheat

description: Table S4. List of miRNA differentially expressed after heat stress. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.8275868
title: Additional file 2: of Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks

description: Adjacency matrices of the five reaction graphs. (XLSX 13419 kb)
DOI: 10.6084/m9.figshare.8275868.v1
title: Additional file 2: of Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks

description: Adjacency matrices of the five reaction graphs. (XLSX 13419 kb)
DOI: 10.6084/m9.figshare.8275853
title: Additional file 5: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S6. Child and adolescent psychiatry training in Europe - Available data detailed for each country (2). (XLS 39 kb)
DOI: 10.6084/m9.figshare.8275844
title: Additional file 4: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S5. Child and adolescent psychiatry training in Europe - Available data detailed for each country (1). (XLS 41 kb)
DOI: 10.6084/m9.figshare.8275853.v1
title: Additional file 5: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S6. Child and adolescent psychiatry training in Europe - Available data detailed for each country (2). (XLS 39 kb)
DOI: 10.6084/m9.figshare.8275844.v1
title: Additional file 4: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S5. Child and adolescent psychiatry training in Europe - Available data detailed for each country (1). (XLS 41 kb)
DOI: 10.6084/m9.figshare.8275832
title: Additional file 3: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S4. General and adult psychiatry training in Europe - Available data detailed for each country (2). (XLS 40 kb)
DOI: 10.6084/m9.figshare.8275832.v1
title: Additional file 3: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S4. General and adult psychiatry training in Europe - Available data detailed for each country (2). (XLS 40 kb)
DOI: 10.6084/m9.figshare.8275823
title: Additional file 2: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S3. General and adult psychiatry training in Europe - Available data detailed for each country (1). (XLS 39 kb)
DOI: 10.6084/m9.figshare.8275823.v1
title: Additional file 2: of Training of adult psychiatrists and child and adolescent psychiatrists in europe: a systematic review of training characteristics and transition from child/adolescent to adult mental health services

description: Table S3. General and adult psychiatry training in Europe - Available data detailed for each country (1). (XLS 39 kb)
DOI: 10.6084/m9.figshare.8275769
title: MOESM1 of What is the available evidence that artificial light at night affects animal behaviour? A systematic map protocol

description: Additional file 1. ROSES checklist.
DOI: 10.6084/m9.figshare.8275763
title: Additional file 5: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S5. ELISA and fecal culture test results of control and MAP challenged animals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8275769.v1
title: MOESM1 of What is the available evidence that artificial light at night affects animal behaviour? A systematic map protocol

description: Additional file 1. ROSES checklist.
DOI: 10.6084/m9.figshare.8275754
title: Additional file 3: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S3. List of identified KEGG pathways in each salivary gland group. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8275763.v1
title: Additional file 5: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S5. ELISA and fecal culture test results of control and MAP challenged animals. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.8275748
title: Additional file 2: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S2. Summary of the identified DEGs in all the 4 salivary gland groups. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.8275751
title: Additional file 9: of Exploring the “Latin American Mediterranean” family and the RDRio lineage in Mycobacterium tuberculosis isolates from Paraguay, Argentina and Venezuela

description: Table S1. Isolates with no classification by SITVITWEB and their corresponding Spotclust results. Table S2. Orphan strains detected in Paraguay by Candia et al., (2007) are detected again in the 2005–2007 cohort. Table S3. Ag85C SNP positive strains that were not classified as LAM by spoligotyping. Table S4. RDRio strains. Table S5. Allelic diversity (h) among the LAM and/or Ag85C SNP positive strains from Argentina, Paraguay and Venezuela. Table S6. Allelic diversity (h) of MIRU minisatellite loci among the LAM or Ag85C SNP positive strains. Table S7. Copy number in MIRU02 and MIRU40 in RDRio strains from Paraguay, Buenos Aires and Caracas. (XLS 71 kb)
DOI: 10.6084/m9.figshare.8275754.v1
title: Additional file 3: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S3. List of identified KEGG pathways in each salivary gland group. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8275751.v1
title: Additional file 9: of Exploring the “Latin American Mediterranean” family and the RDRio lineage in Mycobacterium tuberculosis isolates from Paraguay, Argentina and Venezuela

description: Table S1. Isolates with no classification by SITVITWEB and their corresponding Spotclust results. Table S2. Orphan strains detected in Paraguay by Candia et al., (2007) are detected again in the 2005–2007 cohort. Table S3. Ag85C SNP positive strains that were not classified as LAM by spoligotyping. Table S4. RDRio strains. Table S5. Allelic diversity (h) among the LAM and/or Ag85C SNP positive strains from Argentina, Paraguay and Venezuela. Table S6. Allelic diversity (h) of MIRU minisatellite loci among the LAM or Ag85C SNP positive strains. Table S7. Copy number in MIRU02 and MIRU40 in RDRio strains from Paraguay, Buenos Aires and Caracas. (XLS 71 kb)
DOI: 10.6084/m9.figshare.8275748.v1
title: Additional file 2: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S2. Summary of the identified DEGs in all the 4 salivary gland groups. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.8275739
title: Additional file 1: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S1. Post mapping statistics of each salivary gland sample. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8275739.v1
title: Additional file 1: of Characterization of the bovine salivary gland transcriptome associated with Mycobacterium avium subsp. paratuberculosis experimental challenge

description: Table S1. Post mapping statistics of each salivary gland sample. (XLSX 15 kb)