cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.kfysbe
title: Occurrence Download

description: A dataset containing 987033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Dendrobium discolor, Dendrobium ellipsophyllum, Dendrobium formosum, Dendrobium hercoglossum, Dendrobium secundum, Dendrobium tetragonum, Diospyros oleifera, Diplotaxis acris, Diplotaxis erucoides, Diplotaxis harra, Diplotaxis muralis, Diplotaxis tenuisiliqua, Diplotaxis viminea, Dipterocarpus alatus, Dipterocarpus gracilis, Dipterocarpus intricatus, Dipterocarpus turbinatus, Dipterocarpus zeylanicus, Draba nivalis, Echinochloa haploclada, Echinochloa oryzoides, Engelhardia roxburghiana, Entada phaseoloides, Erigeron bonariensis, Erigeron sumatrensis, Eruca sativa, Eustoma russellianum, Fagopyrum cymosum, Faidherbia albida, Ficus simplicissima, Firmiana hainanensis, Fragaria vesca, Fragaria orientalis, Fragaria daltoniana, Fragaria viridis, Gastrodia menghaiensis, Genlisea aurea, Geum rupestre, Glycine cyrtoloba, Glycine dolichocarpa, Glycine syndetika, Haloxylon ammodendron, Heliophila variabilis, Hevea benthamiana, Hevea pauciflora, Talipariti hamabo)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Machine Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 987033 records from 3399 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046389-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.906093
title: Laser ablation Uranium-Lead dating of the Miocene alluvial-lacustrine Aktau succession in south-east Kazakhstan

description: The Aktau succession is located at 44.03°N and 79.30°E in the Ili Basin, south-east Kazakhstan. The dataset contains measurement results from the Middle to early Late Miocene part of the succession (total height: 372 m, lowermost sample: 0.29 m, uppermost sample: 370.94 m). The laser ablation U-Pb data was aquired from thin sections in order to obtain radiometric ages of carbonates along the Aktau succession.
description: Spot size = 213 µm; depth of crater ~15µm. ²⁰⁷Pb/²⁰⁶Pb error propagation (²⁰⁷Pb signal dependent) following Gerdes & Zeh (2009).* Within run background-corrected mean ²⁰⁶Pb signal in cps (counts per second). ** U and Pb content and Th/U ratio were calculated relative to NIST614.*** percentage of the common Pb on the ²⁰⁶Pb.**** corrected for background, within-run Pb/U fractionation (in case of ²⁰⁶Pb/²³⁸U) and common Pb using Stacy and Kramers (1975) model Pb composition and subsequently normalised to GJ-1 (ID-TIMS value/measured value); ²⁰⁷Pb/²³⁵U calculated using ²⁰⁷Pb/²⁰⁶Pb/(²³⁸U/²⁰⁶Pb*1/137.88)
DOI: 10.6084/m9.figshare.28862658.v1
title: Additional file 1 of Multi-region brain transcriptomic analysis of amyotrophic lateral sclerosis reveals widespread RNA alterations and substantial cerebellum involvement

description: Supplementary Material 1: Supplementary tables: Contains tables S1 to S16.
DOI: 10.1594/pangaea.711075
title: (Table 3) Major and trace element contents in fresh precursor lava and average percent change of the elements between the precursor and altered samples from ODP Hole 193-1188A
DOI: 10.6084/m9.figshare.28862658
title: Additional file 1 of Multi-region brain transcriptomic analysis of amyotrophic lateral sclerosis reveals widespread RNA alterations and substantial cerebellum involvement

description: Supplementary Material 1: Supplementary tables: Contains tables S1 to S16.
DOI: 10.1594/pangaea.956275
title: Authigenic Nd isotope data of ODP Site 177-1094
DOI: 10.1594/pangaea.811003
title: (Table S1) Trace element concentrations of quartz from the Bohemian Massif

description: Acquired at Geological Survey of Norway in Trondheim, empty cells either, not analyzed or falling below the limit of detection.
DOI: 10.1594/pangaea.956276
title: Authigenic Nd isotope of sediment core PS1768-8
DOI: 10.1594/pangaea.872902
title: CLAM age model and pollen profile of sediment core Mfabeni_Peatland
DOI: 10.1594/pangaea.909984
title: Trace element record of stalagmite C09-2 from Closani Cave
DOI: 10.1594/pangaea.942540
title: LA-ICP-MS zircon U-Pb data for the key lithological units in the Chonghuer-Jiadengyu region of the Chinese Altai, NW China (Table S1)

description: Note: Disc (%) = abs (100-100 × ((206Pb/238U age)/(207Pb/206Pb age))); Data with strikethrough (printed version, here for 19CA36 Grain No. 3 and for 17CA105-7, Grain No. 7) are excluded in age data plots.
DOI: 10.6084/m9.figshare.28862657
title: Additional file 1 of Predicting terrestrial heat flow in Egypt using random forest regression: a machine learning approach

description: Supplementary Material 1
DOI: 10.1594/pangaea.933448
title: LA-ICP-MS trace-element data from tephra layer in IODP 374 Expedition Site U1524

description: All values given in mg/kg are determined in ppm.
DOI: 10.6084/m9.figshare.28862657.v1
title: Additional file 1 of Predicting terrestrial heat flow in Egypt using random forest regression: a machine learning approach

description: Supplementary Material 1
DOI: 10.1594/pangaea.921749
title: Trace element mineral analyses from the Northern Apennine ophiolite sequence

description: Empty cell = not determined (n.d.)&lt;0.01 = below detection limit (bdl)&lt;0.0001 = below detection limit (bdl) for Tantalum
DOI: 10.1594/pangaea.911228
title: Geochemistry of benthic foraminifera from IODP Site 347-M0059
DOI: 10.1594/pangaea.956182
title: Authigenic Nd isotope data of ODP Site 177-1093
DOI: 10.1594/pangaea.936541
title: Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters

description: The integrity of coral reefs worldwide is jeopardized by ocean acidification (OA). Most studies conducted so far have focused on the vulnerability to OA of corals inhabiting shallow reefs, while nothing is currently known about the response of mesophotic scleractinian corals. In this study we assessed the susceptibility to OA of corals, together with their algal partners, inhabiting a wide depth range. We exposed fragments of the depth generalist coral Stylophora pistillata collected from either 5 or 45 meters to simulated future OA conditions, and assessed key molecular, physiological and photosynthetic processes influenced by the lowered pH. Our comparative analysis reveals that mesophotic and shallow S. pistillata corals are genetically distinct and possess different symbiont types. Under the exposure to acidification conditions, we observed a 50% drop of metabolic rate in shallow corals, whereas mesophotic corals were able to maintain unaltered metabolic rates. Overall, our gene expression and physiological analyses show that mesophotic corals possess a greater capacity to cope with the effects of OA compared to their shallow counterparts. Such capability stems from physiological characteristics (i.e. biomass and lipids energetics), a greater capacity to regulate cellular acid-base parameters, and a higher baseline expression of cell-adhesion and extracellular matrix genes. Moreover, our gene expression analysis suggests that the enhanced symbiont photochemical efficiency under high pCO₂ levels could prevent acidosis of the host cells and it could support a greater translocation of photosynthates, increasing the energy pool available to the host. With this work, we provide new insights on the response to OA of corals living at mesophotic depths. Our investigation discloses key genetic and physiological traits underlying the potential for corals to cope with future OA conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-09-30.
DOI: 10.1594/pangaea.919944
title: U-Pb analyses and trace element data for detrital zircon, apatite and titanite in sediment core IN2017_V01-A042-KC14

description: Uranium-lead ratios and trace element abundances for detrital zircon, apatite and titanite in kasten core IN2017_V01-AO42-KC14 from the continental slope of central Wilkes Land in East Antarctica. Ages for each analyses are calculated from the U-Pb ratios. All ages and ratios are shown with one standard error. This data was obtained using laser ablation-inductively-coupled plasma mass spectrometry (LA-ICPMS).
description: * All analyses marked with an asterisk in the 'Analysis' column were excluded from data interpretation based on criteria provided in the methods.
DOI: 10.1594/pangaea.938670
title: Seawater carbonate chemistry and combined responses of primary coral polyps and their algal endosymbionts to decreasing seawater pH

description: With coral reefs declining globally, resilience of these ecosystems hinges on successful coral recruitment. However, knowledge of the acclimatory and/or adaptive potential in response to environmental challenges such as ocean acidification (OA) in earliest life stages is limited. Our combination of physiological measurements, microscopy, computed tomography techniques and gene expression analysis allowed us to thoroughly elucidate the mechanisms underlying the response of early-life stages of corals, together with their algal partners, to the projected decline in oceanic pH. We observed extensive physiological, morphological and transcriptional changes in surviving recruits, and the transition to a less-skeleton/more-tissue phenotype. We found that decreased pH conditions stimulate photosynthesis and endosymbiont growth, and gene expression potentially linked to photosynthates translocation. Our unique holistic study discloses the previously unseen intricate net of interacting mechanisms that regulate the performance of these organisms in response to OA.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2021-11-22.
DOI: 10.6084/m9.figshare.28862669
title: Additional file 1 of New information on the Hind limb feathering, soft tissues and skeleton of Microraptor (Theropoda: Dromaeosauridae)

description: Supplementary Material 1. Additional file 1 comprises MS Excel spreadsheets with all the numeric data as well as data used to compare fossil and modern specimens described and discussed in this article.
DOI: 10.6084/m9.figshare.28862669.v1
title: Additional file 1 of New information on the Hind limb feathering, soft tissues and skeleton of Microraptor (Theropoda: Dromaeosauridae)

description: Supplementary Material 1. Additional file 1 comprises MS Excel spreadsheets with all the numeric data as well as data used to compare fossil and modern specimens described and discussed in this article.
DOI: 10.1594/pangaea.938082
title: Geochronologic and trace element concentrations for zircon from Northern Yemen silicic units
DOI: 10.1594/pangaea.971691
title: LegacyPollen2.0: Taxonomically harmonized pollen counts of African samples with revised chronologies

description: This data set consists of the taxonomically harmonized and temporally standardized fossil pollen data from 3680 records. 1122 records are located in North America, 1446 records in Europe, 687 records in Asia, 185 records in South America, 159 in Africa and 81 in the Indo-Pacific region. We expanded the previous version of the LegacyPollen 1.0 data set (Herzschuh et al., 2022; https://doi.org/10.5194/essd-14-3213-2022) with records from the Neotoma Paleoecology Database (https://www.neotomadb.org/; last access: August 31, 2022), ACER 1.0 database (Sánchez Goñi et al., 2017; https://doi.org/10.1594/PANGAEA.870867), Chinese fossil pollen dataset (Zhou et al., 2023, https://www.plant-ecology.com/CN/Y2023/V47/I10/1453 [in Chinese]; Cao et al., 2022, https://doi.org/10.1111/gcb.16274), and our own collection for the Asian sector. Taxonomic harmonization (i.e., woody taxa and major herbaceous taxa have been harmonized to genus level and other herbaceous taxa to family level) and temporal standardization (i.e., re-estimation of age-depth models) follow the previously established frameworks LegacyPollen 1.0 (Herzschuh et al., 2022; https://doi.org/10.5194/essd-14-3213-2022) and LegacyAge 1.0 (Li et al., 2022; https://doi.org/10.5194/essd-14-1331-2022), respectively. In compiling the dataset, we also followed the practices recommended by Flantua et al. (2023; https://doi.org/10.1111/geb.13693) for large-scale paleoecological data synthesis, such as how to select data sources and filter the dataset.Compared to the LegacyPollen 1.0 dataset, we now include the Neotoma DOI (if Neotoma source) in the overview table of site metadata to eliminate the broken chain of static LegacyPollen 2.0 dataset with living (such as updating discovered metadata errors and chronologies) Neotoma and associated risk of data staleness. Furthermore, we also added the PANGAEA Event (PANGAEA dataset identifier) for each new record to ensure that our dataset meets PANGAEA's high standards for quality, usability, and compliance.
DOI: 10.1594/pangaea.971788
title: LegacyPollen2.0: Taxonomically harmonized pollen counts of South American samples with revised chronologies

description: This data set consists of the taxonomically harmonized and temporally standardized fossil pollen data from 3680 records. 1122 records are located in North America, 1446 records in Europe, 687 records in Asia, 185 records in South America, 159 in Africa and 81 in the Indo-Pacific region. We expanded the previous version of the LegacyPollen 1.0 data set (Herzschuh et al., 2022; https://doi.org/10.5194/essd-14-3213-2022) with records from the Neotoma Paleoecology Database (https://www.neotomadb.org/; last access: August 31, 2022), ACER 1.0 database (Sánchez Goñi et al., 2017; https://doi.org/10.1594/PANGAEA.870867), Chinese fossil pollen dataset (Zhou et al., 2023, https://www.plant-ecology.com/CN/Y2023/V47/I10/1453 [in Chinese]; Cao et al., 2022, https://doi.org/10.1111/gcb.16274), and our own collection for the Asian sector. Taxonomic harmonization (i.e., woody taxa and major herbaceous taxa have been harmonized to genus level and other herbaceous taxa to family level) and temporal standardization (i.e., re-estimation of age-depth models) follow the previously established frameworks LegacyPollen 1.0 (Herzschuh et al., 2022; https://doi.org/10.5194/essd-14-3213-2022) and LegacyAge 1.0 (Li et al., 2022; https://doi.org/10.5194/essd-14-1331-2022), respectively. In compiling the dataset, we also followed the practices recommended by Flantua et al. (2023; https://doi.org/10.1111/geb.13693) for large-scale paleoecological data synthesis, such as how to select data sources and filter the dataset.Compared to the LegacyPollen 1.0 dataset, we now include the Neotoma DOI (if Neotoma source) in the overview table of site metadata to eliminate the broken chain of static LegacyPollen 2.0 dataset with living (such as updating discovered metadata errors and chronologies) Neotoma and associated risk of data staleness. Furthermore, we also added the PANGAEA Event (PANGAEA dataset identifier) for each new record to ensure that our dataset meets PANGAEA's high standards for quality, usability, and compliance.
description: The event "TOC_combined" is a combination of the following events: doi:10.21233/WAQT-7P64; doi:10.21233/3MSB-WQ59; doi:10.21233/75V3-KT90; doi:10.21233/PFPC-Z690; doi:10.21233/7QGK-1X45; doi:10.21233/M6T6-HF29; doi:10.21233/21B7-DP81; doi:10.21233/VDQB-JP20; doi:10.21233/8R8C-Y463; doi:10.21233/XBB6-EG50; doi:10.21233/E9EQ-GN10; doi:10.21233/VJ4R-8V71; doi:10.21233/DW1D-HY69; doi:10.21233/W7FK-QC90; doi:10.21233/Z1WH-XQ51; doi:10.21233/5R7C-BJ27; doi:10.21233/9D8F-9X73; doi:10.21233/CV57-GP31; doi:10.21233/7MFY-7A72; doi:10.21233/3C4P-TZ74; doi:10.21233/Q7XF-E133; doi:10.21233/97DA-9N24; doi:10.21233/P6ZV-8K89; doi:10.21233/N1JM-N869; doi:10.21233/7B1H-HB39; doi:10.21233/8D7Y-QV28; doi:10.21233/C5E3-B749; doi:10.21233/2124-R158; doi:10.21233/7VWB-9169; doi:10.21233/WMBM-H866; doi:10.21233/RHTV-RS19
DOI: 10.1594/pangaea.897533
title: Ba/Ca measured in a bamboo coral from the Blake Plateau
DOI: 10.1594/pangaea.975927
title: Seawater carbonate chemistry and sperm and adult biomarkers in the mussel Mytilus galloprovincialis in a multi-stressor context

description: This study investigated the combined impacts of UV-filters 4-methylbenzylidene camphor (4-MBC) and benzophenone-3 (BP-3), at ecologically relevant concentrations (1 and 10 µg/L), under two target pH levels (8.2 and 7.7, reflecting a ∆pH of 0 and -0.3 relative to the average pH at the sampling site), on the biochemical performance and male reproductive health of the mussel Mytilus galloprovincialis.This dataset is included in the OA-ICC data compilation maintained in the framework of the IAEA Ocean Acidification International Coordination Centre (see https://oa-icc.ipsl.fr). Original data were provided by the author of the related paper (see Related to) to the OA-ICC data curator. In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2024) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2025-02-17.
DOI: 10.1594/pangaea.782368
title: (Table S4) Representative trace element composition of different titanite zones, samples VT08121 and VT08122

description: #0 = below detection limit.
DOI: 10.1594/pangaea.910864
title: (Table S2) Elemental data raw results and internal standard errors for hardground samples

description: #9 = bellow detection limit
DOI: 10.1594/pangaea.203910
title: Magnesium/calcium ratio of the foraminifera Oridorsalis umbonatus in surface samples, GeoB8462-4
DOI: 10.1594/pangaea.806342
title: Summary of phase compositions of experimental silicate melt, un-normalised analyses

description: The solubility of Re and Au in haplobasaltic melt has been investigated at 1673–2573 K, 0.1 MPa–2 GPa and IW-1 to +2.5, in both carbon-saturated and carbon-free systems. Results extend the existing, low pressure and temperature, dataset to more accurately predict the results of metal-silicate equilibrium at the base of a terrestrial magma ocean. Solubilities in run-product glasses were measured by laser ablation ICP-MS, which allows for the explicit assessment of contamination by metal inclusions. The Re and Au content of demonstrably contaminant-free glasses increases with temperature, and shows variation with oxygen fugacity (fO2) similar to previous results, although lower valence states for Re (1+, 2+) are suggested by the data. At 2 GPa, and Delta IW of +1.75 to +2, the metal-silicate partition coefficient for Re (DMet/Sil) is defined by the relationLogD[met/sil][Re] = 0.50(±0.022)*10**4/T(K)+3.73(±0.095)For metal-silicate equilibrium to endow Earth's mantle with the observed time-integrated chondritic Re/Os, (and hence 187Os/188Os), DMet/Sil for both elements must converge to a common value. Combined with previously measured DMet/Sil for Os, the estimated temperature at which this convergence occurs is 4500 (±900) K. At this temperature, however, the Re and Os content of the equilibrated silicate is ~100-fold too low to explain mantle abundances. In the same experiments, much lower Dmet/sil values have been determined for Au, and require the metal-silicate equilibration temperature to be &lt;3200 K, as hotter conditions result in an excess of Au in the mantle. Thus, the large disparity in partitioning between Re or Os, and Au at core-forming temperatures argues against their mantle concentrations set solely by metal-silicate equilibrium at the base of a terrestrial magma ocean.
description: Electron microprobe and LA-ICP-MS analyses for glass and alloy phases in experimental run products. Electron microprobe analyses are not normalised in this copy of the table, unlike table 1 of the article; allowing assessment of the data quality.
description: Supplement to: Bennett, Neil R; Brenan, James M (2013): Controls on the solubility of rhenium in silicate melt: Implications for the osmium isotopic composition of Earth's mantle. Earth and Planetary Science Letters, 361, 320-332
DOI: 10.1594/pangaea.767495
title: Oxide concentrations of zircons in ODP Hole 119-741A sample JJV741A
DOI: 10.1594/pangaea.767496
title: Oxide concentrations of zircons in ODP Hole 188-1166A upper level sample
DOI: 10.1594/pangaea.946411
title: Seawater carbonate chemistry and physiological parameters of Acropora humilis, Acropora millepora, Pocillopora damicornis, Pocillopora verrucosa, Porites cylindrica, and Porites lutea

description: Ocean acidification (OA) poses a major threat to calcifying organisms such as reef-building corals, typically leading to reduced calcification rates. Mechanisms to compensate the effects of OA on coral growth may, however, involve processes other than calcification. Yet, the physiological patterns mediating coral growth under OA are not fully understood, despite an extensive body of literature characterizing physiological changes in corals under OA. Therefore, we conducted a three-month laboratory experiment with six scleractinian coral species (Acropora humilis, Acropora millepora, Pocillopora damicornis, Pocillopora verrucosa, Porites cylindrica, and Porites lutea) to assess physiological parameters that potentially characterize growth (calcification, volume, and surface area), maintenance (tissue biomass, and lipid and protein content), and cellular stress (apoptotic activity) response under ambient (pH 7.9) and low pH (pH 7.7). We identified genus- and species-specific physiological parameters potentially mediating the observed growth responses to low pH. We found no significant changes in calcification but species showed decreasing growth in volume and surface area, which occurred alongside changes in maintenance and cellular stress parameters that differed between genera and species. Acropora spp. showed elevated cellular stress and Pocillopora spp. showed changes in maintenance-associated parameters, while both genera largely maintained growth under low pH. Conversely, Porites spp. experienced the largest decreases in volume growth but showed no major changes in parameters related to maintenance or cellular stress. Our findings indicate that growth- and calcification-related responses alone may not fully reflect coral susceptibility to OA. They may also contribute to a better understanding of the complex physiological processes leading to differential growth changes of reef-building corals in response to low pH conditions.
description: In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2021) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2022-07-18.
DOI: 10.1594/pangaea.858150
title: (Tables 7) La ICP-MS analyses of pyrite mapping the Tersang gold deposit