cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.qz612jmc8
title: Data from: Development and validation of a RAD-Seq target-capture based genotyping assay for routine application in advanced black tiger shrimp (Penaeus monodon) breeding programs

description: Background The development of genome-wide genotyping resources has
 provided terrestrial livestock and crop industries with the unique ability
 to accurately assess genomic relationships between individuals, uncover
 the genetic architecture of commercial traits, as well as identify
 superior individuals for selection based on their specific genetic
 profile. Utilising recent advancements in de-novo genome-wide genotyping
 technologies, it is now possible to provide aquaculture industries with
 these same important genotyping resources, even in the absence of existing
 genome assemblies. Here, we present the development of a genome-wide SNP
 assay for the Black Tiger shrimp (Penaeus
 monodon) through utilisation of a reduced-representation
 whole-genome genotyping approach (DArTseq). Results Based on a single
 reduced-representation library, 31,262 polymorphic SNPs were identified
 across 650 individuals obtained from Australian wild stocks and commercial
 aquaculture populations. After filtering to remove SNPs with low read
 depth, low MAF, low call rate, deviation from HWE, and non-Mendelian
 inheritance, 7,542 high-quality SNPs were retained. From these, 4,236
 high-quality genome-wide loci were selected for bates-probe development
 and 4,194 SNPs were included within a finalized target-capture
 genotype-by-sequence assay (DArTcap). This assay was designed for
 routine and cost effective commercial application in large scale breeding
 programs, and demonstrates higher confidence in genotype calls through
 increased call rate (from 80.2 ± 14.7 to 93.0% ± 3.5%), increased read
 depth (from 20.4 ± 15.6 to 80.0 ± 88.7), as well as a 3-fold reduction in
 cost over traditional genotype-by-sequencing approaches. Conclusion
 Importantly, this assay equips the P. monodon industry
 with the ability to simultaneously assign parentage of communally reared
 animals, undertake genomic relationship analysis, manage mate pairings
 between cryptic family lines, as well as undertake advance studies of
 genome and trait architecture. Critically this assay can be cost
 effectively applied as P. monodon breeding programs transition to
 undertaking genomic selection.
description: Datasets utilised and analysed in production of a DArTcap
 genotyping assay for black tiger shrimp (<em>Penaeus
 monodon</em>). Each file (*.csv format) contains either genotype or
 read count information for DArTseq or DArTcap genotyping. Genotypes and
 readcounts are in two row format, with a single column for each
 individual. For further information, please contact the corresponding
 author.
DOI: 10.5061/dryad.hhmgqnkdz
title: The effects of salinity on the ecology of a coastal temporary pond (Data)

description: Temporary waters are relatively understudied environments, particularly
 within the Caribbean. Regionally understudied as well are the insect fauna
 associated with coastal environments. The present study sought to identify
 factors affecting the salinity of a coastal temporary pond and the
 subsequent ecological interactions. When water was present, the aquatic
 physical and chemical properties were recorded, and macroinvertebrate
 fauna were collected. Soil and water were collected for analyses and
 associations between the aquatic environment and fauna detailed. Fauna
 collected overall represented 6 orders, 11 families, 14 genera and 18
 species throughout 4 salinity phases, ranging from freshwater to
 hypersaline. The hypersaline phase was distinct from other phases, notably
 in salinity (maximum 78 parts per thousand) and water temperature (maximum
 41°C). In general, species richness and number of functional feeding
 groups were lower at higher salinities. The brackish phase however, had
 greater species richness and more functional feeding groups than the
 freshwater phase. This was explained in part by the elimination of
 notonectid predators in the brackish phase, which facilitated the
 establishment of several culicid species within the pond. The
 salt-tolerant corixid Trichocorixa reticulata was found dominating the
 pond in the saline phase and was the only species alive in the hypersaline
 phase. This salinity of the pond was determined by both tides and
 rainfall, changing aquatic conditions accordingly. As salinity increased,
 beyond the brackish phase macroinvertebrate species richness decreased. A
 change in species richness saw a change in community composition and
 functional feeding diversity within a coastal temporary pond dominated by
 insects.
DOI: 10.5061/dryad.66t1g1k07
title: Application strategies by selective medium treated with entomopathogenic bacteria Serratia marcescens and Pseudomonas aeruginosa as potential biocontrol against Coptotermes curvignathus

description: The success of microbial termiticides in controlling termites depends on
 the ability of microbes to grow in different medium and the functionality
 of the microbes as a resistant barrier or toxic bait. This study was
 conducted to understand the mortality rate and behaviour changes of
 subterranean termite (Coptotermes curvignathus Holmgren) introduced with
 different concentrations of Serratia marcescens strain LGMS 1 and
 Pseudomonas aeruginosa strain LGMS 3 using wood and soil as bacterial
 transfer medium. In general, higher concentration of bacteria in soil
 caused reduction in tunnelling activity, wood consumption and an increased
 in mortality. However, application on wood revealed a different outcome.
 Wood treated with S. marcescens of 106 CFU/mL concentration proved to be
 more efficient as bait than higher concentration applications as it caused
 high mortality rate while still highly palatable for termites. Wood or
 soil treated with S. marcescens concentration higher than 109 CFU/mL
 creates a high toxicity and repellent barrier for termites. P. aeruginosa
 of 109 CFU/mL concentrations applied on wood served as a slow-acting toxic
 bait. However, the ability for S. marcescens and P. aeruginosa to survive
 on wood are low which caused the bait unable to retain a useful level of
 toxicity for a long period of time and frequent reapplication is needed.
DOI: 10.5061/dryad.j0zpc86c0
title: Supplementary data to “Alternative reproductive tactics are associated with sperm performance in invasive round goby from two different salinity environments”

description: During male-male competition, evolution can favor alternative reproductive
 tactics. This often results in a dominant morph that holds a resource,
 such as a nest for egg laying, competes with a smaller sneaker morph that
 reproduces by stealing fertilizations. The salinity environment can
 influence male growth rates, e.g. via osmoregulatory costs, which in turn
 may influence the use of sneaker tactics for small males competing for
 mating opportunities. Salinity can also affect sperm directly; however,
 little is known of how salinity influences sneaker tactics through sperm
 performance. We sampled males of the invasive round goby (Neogobius
 melanostomus) from two environments, a freshwater river and a brackish
 estuary. This fish has two male morphs: nest-holding dark males and
 non-nest-holding light males. We examined the role of water salinity of 0,
 8 and 16 on sperm performance and found that in estuarine males, a
 salinity of 0 reduced sperm velocity compared to a salinity of 8 and 16.
 Riverine males had low velocity in all salinities. Sperm viability also
 decreased by over 30 % in 0 salinity, compared to 8 and 16, for fish from
 both environments. Gobies produce ejaculate contents in specialized glands
 that could in theory shield sperm in an adverse environment. However,
 gland contents did not improve sperm performance in our tests. Body mass
 and age estimates indicate that riverine males invested more in somatic
 growth compared to estuarine males. Estuarine light morph males had a high
 enough gonadosomatic index to indicate sneaker tactics. We propose that
 when sperm performance is low, such as for the riverine males, sneaker
 tactics are ineffective, and will be selected against or phenotypically
 suppressed. Instead, we interpret the increased investment in somatic
 growth found in riverine males as a life-history decision that is
 advantageous when defending a nest in the next reproductive season.
description: Please see manuscript for an extensive description of data
 collection. Physiological data from <em>Neogobius
 melanostomus</em> sampled from a river and a brackish estuary in
 2017.
description: Please see Readme.rtf file for information. Data stored and
 published under Creative Commons.
DOI: 10.5281/zenodo.18395771
title: Dataset de benchmark comparativo de honeypots tradicionales y mejorados con aprendizaje automático (2026)

description: Dataset del primer benchmark comparativo concurrente de 6 honeypots open-source (3 tradicionales: T-Pot 24.04, Cowrie 2024.2, Dionaea 2024.1; 3 ML-enhanced: Artifice, HoneyGAN, baseline propio Cowrie + Isolation Forest). Desplegados simultáneamente 60 días (enero-marzo 2026) en Hetzner Cloud (Alemania) con tráfico real replicado (tcpreplay). Incluye logs JSON/CSV anonimizados (~2.58M eventos iniciales, acumulado proyectado >10M), métricas diarias (CPU/RAM/logs/interacciones/fingerprinting), capturas pcap (487 GB proyectados), scripts Docker/Ansible y notebooks Jupyter para análisis estadístico.  

Fase principal en curso (enero 2026). Datos piloto Día 18 (~1.5-2M eventos). Muestra pública disponible en ZIP (logs anonimizados Día 18). Datos completos restringidos hasta finalización del experimento (31/03/2026).  

Repositorio de código y despliegue: https://github.com/namus15/comparative-honeypot-benchmark-2026

Dataset de honeypots comparativos 2026Autor: Dr. Giovanni Carlos Lorusso MontielDOI: https://doi.org/10.5281/zenodo.17688915

Orcid 0000-0002-3122-8142

Experimento: 60 días completos (enero–marzo 2026)5 honeypots concurrentes + monitor centralLicencia: CC-BY-4.0
DOI: 10.5061/dryad.msbcc2fw3
title: The Jurassic rise of squamates as supported by lepidosaur disparity and evolutionary rates

description: The squamates (lizards, snakes, and relatives) today comprise more than
 10,000 species, and yet their sister group, the Rhynchocephalia, is
 represented by a single species today, the tuatara. The explosion in
 squamate diversity has been tracked back to the Cretaceous Terrestrial
 Revolution, 100 million years ago (Ma), the time when flowering plants
 began their takeover of terrestrial ecosystems, associated with
 diversification of coevolving insects and insect-eating predators such as
 lizards, birds, and mammals. Squamates arose much earlier, but their long
 pre-Cretaceous history of some 150 million years (Myr) is documented by
 sparse fossils. Here, we provide evidence for an initial radiation of
 squamate morphology in the Middle and Late Jurassic (174–145 Ma), and show
 that they established their key ecological roles much earlier than had
 been assumed, and they have not changed them much since.
description: Landmarking Geometric morphometrics
DOI: 10.5061/dryad.bk3j9kd89
title: Data from: Extra food provisioning reduces extra-pair paternity in the lesser kestrel (Falco naumanni)

description: Female promiscuity can function to acquire both direct and indirect
 benefits from their social mate and extra-pair males. In many raptor
 species, intense mate-feeding significantly contributes to female energy
 requirements before and during egg laying. Moreover, females may use
 mate-feeding effort to assess male quality. In this study of the lesser
 kestrel (Falco naumanni), we aimed at experimentally manipulating the
 female’s perception of mate quality by providing females with extra food
 during egg laying, and evaluated the occurrence of extra-pair paternity in
 food-supplemented and control broods by parentage analyses. No extra-pair
 offspring (EPO) was found among 19 food-supplemented broods, whereas EPO
 occurred in five out of 17 control broods. No significant differences in
 morphological traits, body condition and reproductive success were found
 between faithful and unfaithful females. However, clutches containing EPO
 were laid later in the breeding season. Moreover, un-cuckolded males had
 longer tarsi than cuckolded ones, indicating larger body size. Hence,
 extra food provisioning and early breeding reduced the occurrence of EPO
 in lesser kestrels. In addition, we confirmed the occurrence of
 intraspecific brood parasitism, as five nestlings were not the offspring
 of the brooding female. The results of our food-provisioning experiment
 support the idea that mate-feeding ability is a reliable indicator of male
 quality, and are in accordance with the hypothesis that male mate-feeding
 behaviour is a sexually selected trait.
DOI: 10.5061/dryad.fbg79cnsd
title: Integrating light-level geolocation with activity tracking reveals unexpected nocturnal migration patterns of the tawny pipit

description: Migratory birds complete their seasonal journeys between breeding and
 non-breeding sites with a series of migratory flights that are separated
 by prolonged stopovers. While songbirds are the most common taxa among
 migratory birds, empirical data on flight and stopover behaviour along
 their entire migratory journeys are still rare. Here, we integrate
 activity and barometric pressure tracking with classical light-level
 geolocation to describe migration behaviour of tawny pipits Anthus
 campestris breeding in Central Europe. Surprisingly, tracked pipits used,
 on average, as many as 10 stopover sites during their six week,
 &gt;5000 km long autumn migration. This conforms to a typical hop-type
 pattern of migration. In contrast to common knowledge which considers the
 tawny pipit as a typical diurnal migrant, our data revealed that more than
 2/3 of all migratory movements were carried out at night. Nocturnal
 departure times were highly variable within individuals and spread across
 the entire night while landing most often took place within the first few
 hours after sunrise. Consequently, there was a negative relationship
 between departure timing relative to sunset and flight duration. Short
 flights of up to 2 h were most common and median flight duration was 4.5
 h. There was a hyperbolic relationship between flight duration and maximum
 flight altitude and flight altitudes during night were two times higher
 compared to daytime. The overall ratio of flight vs stopover duration
 during migration was on average 1:6.5. This closely matches predictions
 from theoretical models. We show that multi-sensor tracking has the
 potential to provide unprecedented details on migratory behaviour of
 individual birds along their entire migratory journeys, and it also
 improves the precision of geographical locations derived from light-level
 geolocators.
description: This data was collected using multi-sensor geolocators
 GDL3-PAM (Swiss Ornithological Institute) that were mounted on Tawny
 Pipits (Anthus campestris) using leg-loop harness. This
 is Raw data.
description: See Readme file.
DOI: 10.5281/zenodo.18395766
title: CannabisDealsUS Cannabis Price Index (Weekly)

description: Weekly aggregated dataset tracking U.S. cannabis retail price trends across CBD, THC, Vaporizers, Headshop, and related categories.

The dataset is derived from a large-scale sample of licensed online cannabis retailers and provides category- and subcategory-level price averages and index values using a documented methodology with clear inclusion and exclusion rules.

This dataset contains no affiliate links, no merchant-level data, and is intended for research and journalistic reference.
description: Citations

This dataset has been cited in independent cannabis market analysis by:





Cannigma




The Marijuana Herald



Links to the articles are available on the canonical index page:https://cannabisdealsus.com/cannabis-price-index/
DOI: 10.5061/dryad.g79cnp5nc
title: Data from: The standard metabolic rate of a land snail (Cepaea hortensis) is a repeatable trait and influences winter survival

description: Phenotypic selection on physiological parameters is an underrepresented
 topic in studies of evolutionary biology. There is especially a lack of
 studies involving invertebrate organisms. We studied the repeatability of
 the standard metabolic rate (SMR) and the effect of individual variation
 in SMR on the subsequent winter survival in a terrestrial shell-bearing
 mollusc, the white-lipped snail (Cepaea hortensis) in mid-Norway. SMR was
 measured twice during the autumn and – after an experimental overwintering
 at controlled conditions – twice during the following spring. We found a
 significant repeatability of SMR over all three time periods tested, with
 a clear effect of time, with a high repeatability of 0.56 over 4 days
 during spring, 0.44 over 12 days in the autumn and 0.17 over 194 days from
 autumn to spring. That SMR is a repeatable physiological trait across the
 winter period during which a possible selection might occur, suggests that
 SMR could be a potential target of natural selection. We indeed found that
 the autumn SMR significantly influenced the probability of survival during
 the winter period, with a combination of a positive linear (P = 0.011) and
 a quadratic stabilizing (P = 0.001) effect on SMR. Our results hence
 support the view that metabolic rate is an important physiological
 component influencing the fitness of an organism.
DOI: 10.5061/dryad.r7sqv9s92
title: Negative effects of neonicotinoids on male honeybee survival, behaviour and physiology in the field

description: 1. Agricultural chemicals such as neonicotinoid insecticides are believed
 to be one important factor responsible for the recent reduction in health
 of pollinating insects like the western honeybee (Apis mellifera).
 However, effects of neonicotinoids on male (drone) honeybee health remain
 severely understudied. 2. We examined for the first time the
 multi-dimensional effects of field-realistic concentrations of two common
 neonicotinoid insecticides (thiamethoxam and clothianidin) on drone
 honeybee survival, behaviour, and physiology using individuals reared and
 maintained as adults in the field. 3. Our data showed that neonicotinoids
 reduced honeybee drone survival by 51%, increased drifting behaviour to
 non-maternal colonies by 100%, delayed flight activities by three days,
 and reduced number of living sperm by 28%. However, they did not influence
 the sperm concentration produced by the drones, the strength of the
 drone’s maternal colonies, or the total number of drones produced by those
 colonies. 4. ‘Policy implications’: Our study demonstrated that
 neonicotinoids can elicit a diverse array of lethal (survival) and
 sub-lethal (behaviour, reproductive physiology) effects on male honeybees
 (Apis mellifera) in the field. These findings should be considered by
 policy makers looking to adopt and implement science-based, holistic risk
 assessments to more comprehensively assess effects of chemicals on
 important ecosystem service providing insects like the honeybee. To date,
 risk assessment schemes do not specifically address potential effects on
 male bees.
DOI: 10.5061/dryad.6djh9w0zd
title: Evolution of putative barrier loci at an intermediate stage of speciation with gene flow in campions (Silene)

description: Understanding the origin of new species is a central goal in evolutionary
 biology. Diverging lineages often evolve highly heterogeneous patterns of
 genetic differentiation; however, the underlying mechanisms are not well
 understood. We investigated evolutionary processes governing genetic
 differentiation between the hybridizing campions Silene dioica (L.)
 Clairv. and S. latifolia Poiret. Demographic modeling indicated that the
 two species diverged with gene flow. The best-supported scenario with
 heterogeneity in both migration rate and effective population size
 suggested that a small proportion of the loci evolved without gene flow.
 Differentiation (FST) and sequence divergence (dXY) were correlated and
 both tended to peak in the middle of most linkage groups, consistent with
 reduced gene flow at highly differentiated loci. Highly differentiated
 loci further exhibited signatures of selection. In between-species
 population pairs, isolation by distance was stronger for genomic regions
 with low between-species differentiation than for highly differentiated
 regions that may contain barrier loci. Moreover, differentiation
 landscapes within and between species were only weakly correlated
 suggesting that linked selection due to shared recombination and gene
 density landscapes is not the dominant determinant of genetic
 differentiation in these lineages. Instead, our results suggest that
 divergent selection shaped the genomic landscape of differentiation
 between the two Silene species, consistent with predictions for speciation
 in the face of gene flow.
description: The final filtered SNP data was in the VCF
 file- DP3g70maf00MD10.SNP.recode.vcf
description: Perl script for calculating site Dxy and example input can be
 found in Calc_Dxy.zip Perl script for calculating
 Tajima's D and example input can be found in
 Cal_TajimaD.zip All tested demographic models in the
 paper are defined in the file dadi_define_model.py R
 code for generating Manhatann plot for the population statisitcs can be
 found in the file plot_statistics.R
DOI: 10.5061/dryad.vx0k6djph
title: The limited spatial scale of dispersal in soil arthropods revealed with whole-community haplotype-level metabarcoding

description: Soil mesofauna communities are hyperdiverse and critical for ecosystem
 functioning. However, our knowledge on spatial structure and underlying
 processes of community assembly for soil arthropods is scarce, hampered by
 limited empirical data on species diversity and turnover. We implement a
 high-throughput-sequencing approach to generate comparative data for
 thousands of arthropods at three hierarchical levels: genetic, species and
 supra-specific lineages. A joint analysis of the spatial arrangement
 across these levels can reveal the predominant processes driving the
 variation in biological assemblages at the local scale. This
 multi-hierarchical approach was performed using haplotype-level-COI
 metabarcoding of entire communities of mites, springtails and beetles from
 three Iberian mountain regions. Tens of thousands of specimens were
 extracted from deep and superficial soil layers and produced comparative
 phylogeographic data for &gt;1000 co-distributed species and nearly
 3000 haplotypes. Local assemblages were highly distinctive between
 grasslands and forests, and within each of them showed strong spatial
 structures and high endemicity at the scale of a few kilometres or less.
 The local distance-decay patterns were self-similar for the haplotypes and
 higher hierarchical entities, and this fractal structure was very similar
 in all three regions, pointing to a significant role of dispersal
 limitation driving the local-scale community assembly. Our results from
 whole-community metabarcoding provide insight into how dispersal
 limitations constrain mesofauna community structure within local spatial
 settings over evolutionary timescales. If generalized across wider areas,
 the high turnover and endemicity in the soil locally may indicate
 extremely high richness globally, challenging our current estimations of
 total arthropod-diversity on Earth.
description: See Material & Methods.
description: This dataset includes the
 Illumina raw metabarcode data for the libraries generated from three
 Iberian mountain regions (GRA, ALZ, CUE). For additional information on
 the sample codes, please see Table S1 in the Supporting
 Information.