cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17134295.v1
title: Supplementary Material for: NPPA promoter hypomethylation predicts central obesity development: a prospective longitudinal study in Chinese adults

description: Introduction: Atrial natriuretic peptide (ANP) plays a potential role in obesity with unclear molecular mechanisms. The objective of this study was to examine the association between its coding gene (NPPA) methylation and obesity. Methods: Peripheral blood DNA methylation of NPPA promoter was quantified at baseline by targeted bisulfite sequencing for 2,497 community members (mean aged 53 years, 38% men) in the Gusu cohort. Obesity was repeatedly assessed by body mass index (BMI) and waist circumference (WC) at baseline and follow-up examinations. The cross-sectional, longitudinal, and prospective associations between NPPA promoter methylation and obesity were examined. Results: Of the 9 CpG loci assayed, DNA methylation levels at 6 CpGs were significantly lower in participants with central obesity than those without (all P&lt;0.05 for permutation test). These CpG methylation levels at baseline were also inversely associated with dynamic changes in BMI or WC during follow-up (all P&lt;0.05 for permutation test). After an average 4 years of follow-up, hypermethylation at the 6 CpGs (CpG2 located at Chr1: 11908348, CpG3 located at Chr1:11908299, CpG4 located at Chr1:11908200, CpG5 located at Chr1:11908182, CpG6 located at Chr1:11908178, and CpG8 located at Chr1:11908165) were significantly associated with a lower risk of incident central obesity (all P&lt;0.05 for permutation test). Conclusions: Hypomethylation at NPPA promoter was associated with increased future risk of central obesity in Chinese adults. Aberrant DNA methylation of the NPPA gene may participate in the mechanisms of central obesity.
DOI: 10.6084/m9.figshare.17701163.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 33
DOI: 10.6084/m9.figshare.21893121.v5
title: Robot-assisted homecare: a user study on needs and challenges

description: The repository includes the data used in the paper "Robot-assisted homecare: a user study on needs and challenges". There is one file in this repository: User study interview records.docx <br> This file has the interview notes of 31 interviewees for the user study. It includes users' gender, type (older adult, caregiver or family member), key insights, questions and answer notes.
DOI: 10.6084/m9.figshare.12091860.v1
title: Banco CIQ Stroke.xlsx

description: This is the research database PREDICTORS OF COMMUNITY INTEGRATION IN INDIVIDUALS AFTER STROKE IN A RESIDENTIAL SETTING: A LONGITUDINAL STUDY in Excel Windows format
DOI: 10.6084/m9.figshare.3580680.v3
title: Tuberculous tenosynovitis of the flexor tendons of the wrist: A case Report.

description: Introduction Tuberculous tenosynovitis of the flexor tendons of the wrist also referred to, as a compound palmar ganglion is uncommon. It has a classical clinical presentation and histopathology confirms it. Case Presentation We present a case of a 65 year old Ghanaian female with a two-year history of a progressively enlarging dumbbell shaped mass over the volar surface of the right wrist and palm. She did not have a previous history of tuberculosis. However, her Erythrocyte Sedimentation Rate (ESR) was high and Mantoux test was strongly positive (more than 15mm). Radiograph of ulna, radius and wrist showed osteopenic changes of the distal radius. Findings at excision biopsy were inflamed, thickened synovia and rice bodies. Tissue samples were submitted for histological and microbial studies. Anti-tuberculous therapy was commenced on the second postoperative day. Conclusion Tuberculous tenosynovitis of the wrist is uncommon. However in developing countries like Ghana where tuberculosis is prevalent, it should be part of the differential diagnosis of compound palmar ganglion in order to prevent delayed diagnosis and treatment.
DOI: 10.6084/m9.figshare.24930798.v1
title: Traffic, road attributes and roadkill data (Denneboom et al., 2024)

description: Traffic volume, road attributes and roadkill data of 18 species in Israel. Used for statistical analyses in the research paper 'Wildlife mortality risk posed by high and low traffic roads' (Denneboom et al., 2024).
DOI: 10.6084/m9.figshare.13373120.v1
title: Supplementary Material for: Collecting Valid and Reliable Data: Fieldwork Monitoring Strategies in a Health Examination Survey

description: <b><i>Introduction:</i></b> Health surveys constitute a relevant information source to access the population’s health status. Given that survey errors can significantly influence estimates and invalidate study findings, it is crucial that the fieldwork progress is closely monitored to ensure data quality. The objective of this study was to describe the fieldwork monitoring conducted during the first Portuguese National Health Examination Survey (INSEF) regarding protocol deviations and key performance indicators (KPI). <b><i>Methods:</i></b> Data derived from interviewer observation and from the statistical quality control of selected KPI were used to monitor the four components of the INSEF survey (recruitment, physical examination, blood collection and health questionnaire). Survey KPI included response rate, average time distribution for procedures, distribution of the last digit in a specific measure, proportion of haemolysed blood samples and missing values. <b><i>Results:</i></b> Interviewer observation identified deviations from the established protocols, which were promptly corrected. During fieldwork monitoring through KPI, upon implementation of corrective measures, the participation rate increased 2.5-fold, and a 4.4-fold decrease in non-adherence to standardized survey procedures was observed in the average time distribution for blood pressure measurement. The proportion of measurements with the terminal digit of 0 or 5 decreased to 19.6 and 16.5%, respectively, after the pilot study. The proportion of haemolysed samples was at baseline level, below 2.5%. Missing data issues were minimized by promptly communicating them to the interviewer, who could recontact the participant and fill in the missing information. <b><i>Discussion/Conclusion:</i></b> Although the majority of the deviations from the established protocol occurred during the first weeks of the fieldwork, our results emphasize the importance of continuous monitoring of survey KPI to ensure data quality throughout the survey.
DOI: 10.6084/m9.figshare.5124778.v1
title: Supplementary Material for: Ferric Citrate Hydrate, a New Phosphate Binder, Prevents the Complications of Secondary Hyperparathyroidism and Vascular Calcification

description: <b><i>Background/Aims:</i></b> Ferric citrate hydrate (JTT-751) is being developed as a treatment for hyperphosphatemia in chronic kidney disease patients, and shows serum phosphorus-reducing effects on hyperphosphatemia in hemodialysis patients. We examined whether JTT-751 could reduce phosphorus absorption in normal rats and prevent the progression of ectopic calcification, secondary hyperparathyroidism and bone abnormalities in chronic renal failure (CRF) rats. <b><i>Methods:</i></b> Normal rats were fed a diet containing 0.3, 1 or 3% JTT-751 for 7 days. The effects of JTT-751 on phosphorus absorption were evaluated with fecal and urinary phosphorus excretion. Next, a CRF model simulating hyperphosphatemia was induced by feeding rats a 0.75% adenine diet. After 21 days of starting the adenine diet feeding, 1 or 3% JTT-751 was administered for 35 days by dietary admixture. The serum phosphorus levels and mineral parameters were measured. Calcification in the aorta was examined biochemically and histopathologically. Hyperparathyroidism and bone abnormalities were evaluated by histopathological analysis of the parathyroid and femur, respectively. <b><i>Results:</i></b> In normal rats, JTT-751 increased fecal phosphorus excretion and reduced phosphorus absorption and urinary phosphorus excretion. In CRF rats, JTT-751 reduced serum phosphorus levels, the calcium-phosphorus product and calcium content in the aorta. Serum intact parathyroid hormone levels and the incidence and severity of parathyroid hyperplasia were also decreased. JTT-751 reduced femoral bone fibrosis, porosity and osteoid formation. <b><i>Conclusions:</i></b> JTT-751 could bind with phosphate in the gastrointestinal tract, increase fecal phosphorus excretion and reduce phosphorus absorption. JTT-751 could prevent the progression of ectopic calcification, secondary hyperparathyroidism and bone abnormalities in rats.
DOI: 10.6084/m9.figshare.16847467.v1
title: Bacillus Subtilis Marburg Differential Expression Data

description: This dataset contains metadata and data for differential expression analysis conducted with Bacillus subtilis Marburg 168 induced by four inducers at two time points. The inducers include Vanillic acid, cuminic acid, Xylose, and IPTG. Data was collected on two separate days (Test and Test Repeat). The only difference between the two days were the latter day had a larger volume of cells collected to extract RNA, a parameter that does not directly impact differential expression analysis.
DOI: 10.6084/m9.figshare.24279499.v1
title: <b>Structural origins of dielectric anomalies in the filled tetragonal tungsten bronze, </b><b>Sr</b><sub><strong>2</strong></sub><b>NaNb</b><sub><strong>5</strong></sub><b>O</b><sub><strong>15</strong></sub><b> - Data Upload</b>

description: PXRD data collected at Taiwan Photon Source (TPS) and Diamond Light Source (DLS) relating to the refinements discussed in the manuscript, Structural origins of dielectric anomalies in the filled tetragonal tungsten bronze, Sr<sub>2</sub>NaNb<sub>5</sub>O<sub>15</sub>.10 K and room-temperature neutron powder X-ray data from D2B of ILL and the according refinements discussed in the manuscript, Structural origins of dielectric anomalies in the filled tetragonal tungsten bronze, Sr<sub>2</sub>NaNb<sub>5</sub>O<sub>15</sub>.DFT-relaxed structures and phonon plots discussed in manuscript, Structural origins of dielectric anomalies in the filled tetragonal tungsten bronze, Sr<sub>2</sub>NaNb<sub>5</sub>O<sub>15</sub>.
DOI: 10.6084/m9.figshare.28743122.v1
title: Student Attrition Research

description: This data set was used to investigate factors which affect student withdrawal at a community college in Trinidad and Tobago. Data were collected from sixteen student cohorts who had enrolled in associate or bachelor’s degree at the college. Student-level variables include: sex, age, entry qualifications, end-of-semester GPA and enrolment status (full-time/ part-time).
DOI: 10.6084/m9.figshare.24166248.v2
title: ChatGPT & SE Study Data

description: ChatGPT & SE Study Data
DOI: 10.6084/m9.figshare.4763464.v1
title: WikiPathways SD file (v.2)

description: Second release of a Structure Data File (SDF) containing metabolites found in WikiPathways. The file is created with SMILES strings from Wikidata based on the ID mappings to metabolites in the pathways, and converted into a SD file with CDK 1.5.14.
DOI: 10.6084/m9.figshare.12389789.v1
title: North Pond 2017 High Completion Bins

description: Assembled metagenomes from 2017 and metatranscriptomes from 2012, 2014, and 2017 cruises to North Pond (Mid-Atlantic Ridge) were prepared for binning with Binsanity (Graham et al., 2017) by building a bowtie index from each 150-kmer assembly using bowtie2-build (Langmead and Salzberg, 2012). Sequence alignment map (SAM) files were generated in bowtie from all the North Pond metagenomes (2012-2017) using each bowtie index file. The SAM files were then converted to a compressed binary version (BAM files). These BAM files and the assembled metagenomes and metatranscriptomes were run through Binsanity iteratively, a total of six times with a refinement step in between each binning and using checkm (Park et al., 2014) to identify high-completion bins. Low-completion and high-redundancy bins were combined after each binning step to be rebinned. Bins were classified using the following parameters:<br>1) High-completion: &gt;90% complete with &lt;10% redundancy, greater than 80% with &lt;5% redundancy, or &gt;50% with &lt;2% redundancy2) Low-completion: &lt;50% complete with &lt;5%redundancy3) Strain heterogeneity: &gt;90% complete with &gt;90% strain heterogeneity4) High-redundancy: &gt;80% complete with &gt;10% redundancy, or &gt;50% complete &gt;5% redundancy<br>
DOI: 10.6084/m9.figshare.12217679.v2
title: Ramsar Sites

description: This data set includes the centroids and boundary shapefiles for global Ramsar sites.
DOI: 10.6084/m9.figshare.25035998.v3
title: Triaxial fluid depressurization experiments with different shut-in strategies on a granodiorite sample

description: This is the experimental data for the manuscript entitled <b><i>Fluid extraction mitigates post-injection seismicity in laboratory experiments and geothermal reservoirs</i></b>, which has been submitted for consideration for publication in<i> Nature</i>.The files include the recorded and computed data of the laboratory-scale fluid depressurization experiments presented in the manuscript. "Hydraulic_data.xlsx" is the injection and monitoring data of the injected distilled water derived from the Quizix Q6000-20K pumps. "Mechanical_data.xlsx" is the raw data recorded by the MTS-815 rock mechanics testing system as well as the stress and deformation data of the tested sample computed based on the raw data. "Pore_pressure_at_Mw 3.2.xlsx" is the numerically modeled pore pressure change at the hypocenter of the M<sub>w</sub> 3.2 earthquake relative to the start of the first stimulation in the Pohang EGS.
DOI: 10.6084/m9.figshare.25426279.v1
title: <i>NIOSH WELLBQ QUESTIONNAIRE ENGLISH AGE GROUP</i>

description: DATASET
DOI: 10.6084/m9.figshare.25567578.v1
title: Supplementary Material for: Risk Factors and Temporal Patterns of Post-Stroke Epilepsy Across Stroke Subtypes: Insights from a Nationwide Cohort Study in Korea

description: Introduction: We aimed to investigate the risk factors associated with post-stroke epilepsy (PSE) among patients with different subtypes of stroke, focusing on age-related risk and time-varying effects of stroke subtype on PSE development.
Methods: A retrospective, nationwide, population-based cohort study was conducted using Korean National Health Insurance Service–National Sample Cohort data. Patients hospitalized with newly diagnosed stroke from 2005 to 2015 were included and followed up for up to 10 years. The primary outcome was the development of PSE, defined as having a diagnostic code and a prescription for anti-seizure medication. Multivariable Cox proportional hazard models were used to estimate PSE hazard ratios (HRs), and time-varying effects were also assessed.
Results: A total of 8,305 patients with ischemic stroke, 1,563 with intracerebral hemorrhage (ICH), and 931 with subarachnoid hemorrhage (SAH) were included. During 10 years of follow-up, 4.6% of patients developed PSE. Among patients with ischemic stroke, significant risk factors for PSE were younger age (HR = 1.47), living in rural areas (HR = 1.35), admission through the emergency room (HR = 1.33), and longer duration of hospital stay (HR = 1.45). Time-varying analysis revealed elevated hazard ratios for ICH and SAH, particularly in the first two years following the stroke. The age-specific hazard ratios also showed an increased risk for those under the age of 65, with a noticeable decrease in risk beyond that age.
Conclusion: The risk of developing PSE varies according to stroke subtype, age, and other demographic factors. These findings underscore the importance of tailored poststroke monitoring and management strategies to mitigate the risk of PSE.
DOI: 10.6084/m9.figshare.5873733.v1
title: Diabetes NHS prescribing trends 1998-2016 dataset

description: Dataset of long term trends of prescribing in England, from PCA data, accompanying our paper "Time Trends and Geographical Variation in Prescribing of Drugs for Diabetes in England 1998-2017", Curtis et al, submitted Feb 2018. Also includes prevalence figures obtained from Sharma et al 2016. <br>
DOI: 10.6084/m9.figshare.20309730.v1
title: Dataset used for evaluating 10+10+30 radio campaign on childhood vaccination in Jimma Zone, Ethiopia

description: The dataset describes the variables used for evaluativeness the effectiveness of the 10+10+30 radio campaign on childhood vaccine in Jimma Zone, Ethiopia
DOI: 10.6084/m9.figshare.7982066.v2
title: Dataset Frail cohort

description: Frailty prevalence study data cohort
DOI: 10.6084/m9.figshare.26364601.v1
title: Data and code for "Environmental context influences visual processing in thalamus," Peelman & Haider, Current Biology, 2025

description: MATLAB data and code needed to reproduce all main and supplemental figures and quantification "Environmental context influences visual processing in thalamus," Peelman & Haider, Current Biology, 2025Codebase updated on Jan 29, 2025 for revised manuscript.Codebase uploaded on Jul 29, 2024All code tested in Matlab 2018b, 2023a. See readme.txt in .zip archive for instructions.<br><br><br>
DOI: 10.6084/m9.figshare.28759280.v1
title: Construction of the super pan-genome for the genus <i>Actinidia</i> reveals structural variations linked to phenotypic diversity

description: Here are genome and annotation data of 7 <i>Actinidia</i> materials used in contraction of super pan-genome.<br>Our paper has been published on <i>Horticulture Research</i>. Please read and cite.<br>Haolin Wu, Wenjie Yang, Guanyong Dong, Quanjun Hu, Dawei Li, Jianquan Liu, Construction of the super pan-genome for the genus <i>Actinidia</i> reveals structural variations linked to phenotypic diversity, <i>Horticulture Research</i>, 2025;, uhaf067, https://doi.org/10.1093/hr/uhaf067
DOI: 10.6084/m9.figshare.1372445.v1
title: MIF mediates PAR-induced bladder pain

description: Data files used to generate figures and analyses.
DOI: 10.6084/m9.figshare.10095872.v1
title: Supplementary Material for: A Polymorphism in <b><i>Interleukin-1β</i></b> Gene Is Associated with the Development of Pouchitis in Japanese Patients with Ulcerative Colitis

description: <b><i>Background:</i></b> Major complications in patients with ulcerative colitis (UC) include UC-associated cancer (UCAC) and postoperative pouchitis. We aimed to identify SNPs associated with UCAC/high-grade dysplasia (HGD) and pouchitis. <b><i>Methods:</i></b> Patients with UC who underwent ileal pouch-anal anastomosis (IPAA) with &gt;2 years of follow-up after functioning pouches were included. Pouchoscopies were performed at least once to diagnose pouchitis according to the modified pouchitis disease activity index. SNP genotyping was performed for 8 SNPs reportedly associated with UCAC and pouchitis, namely: <i>ELF1</i> (rs7329174), <i>FCGR2A</i>, (rs1801274), interleukin-1β (<i>IL-1B</i>; rs1143627), <i>ITLN1</i> (rs2274910), <i>MHC</i> (rs7765379), <i>TNFα</i> (rs1799964), <i>TNFSF15</i> (rs3810936), and <i>UHMK1</i> (rs768910), using TaqMan genotyping technologies. We investigated the association of these SNPs with UCAC/HGD and pouchitis. Patients’ background data were retrospectively collected, including the presence of preoperative extraintestinal manifestation (EIM). <b><i>Results:</i></b> A total of 91 Japanese patients with UC were included. None of the 8 SNPs were associated with UCAC/HGD in our cohort. Multivariable analyses proved that the presence of preoperative EIM (hazard ratio [HR] 3.313, 95% CI 1.325–8.289) and <i>IL-1B</i> (rs1143627) TT genotype (HR 2.425, 95% CI 1.049–5.61) were independent predictive factors for the development of overall pouchitis. The presence of preoperative EIM (HR 3.977, 95% CI 1.292–12.24) and <i>IL-1B</i> (rs1143627 TT genotype; HR 3.382, 95% CI 1.101–10.39) were also independent predictive factors for the development of chronic pouchitis. <b><i>Conclusions:</i></b> The <i>IL-1B</i> (rs1143627) TT genotype and preoperative EIM were statistically significant predictors of pouchitis development after IPAA in patients with UC.
DOI: 10.6084/m9.figshare.21276693.v1
title: Togo Skin NTDs dataset

description: A dataset of the findings from the Togo-Southampton Skin NTDs study. <br> See the full open access paper here - https://journals.plos.org/plosntds/article?id=10.1371/journal.pntd.0010697
DOI: 10.6084/m9.figshare.11853390.v1
title: Data set for Log jam formation at bridges and the effect on floodplain flow: A flume experiment

description: Data set for Log jam formation at bridges and the effect on floodplain flow: A flume experiment <br>Takaaki Okamoto | Hiroshi Takebayashi | Michio Sanjou | Ryuta Suzuki | Keiichi Toda<br>J Flood Risk Management. 2020;13 (Suppl. 1):e12562.<br><br>https://onlinelibrary.wiley.com/doi/epdf/10.1111/jfr3.12562<br>
DOI: 10.17608/k6.auckland.14285066.v1
title: Supplementary data 7. The top five KEGG pathways enriched by each module

description: All significant network modules were enriched for biological pathways. The top five KEGG pathways enrichment results of each of the 14 modules show that the functional modules have distinct biological functions. The top five KEGG pathways results are given in the table.
DOI: 10.6084/m9.figshare.22955261.v1
title: Supplementary tables S2 and S3 from the paper "Landscape heterogeneity and soil biota are central to multi-taxa diversity for landscape restoration"

description: Supplementary tables S2 " Variation in connectivity of the network for beta diversity, turnover and nestedness by including contrasting metrics of vegetation structural complexity and soil conditions" and S3 "Number of undirected edges of the network for beta diversity, turnover and nestedness at different combinations of variables "
DOI: 10.6084/m9.figshare.23296271.v2
title: <strong>Coronel-Monje et al., 2023.</strong>

description: Raw data obtained from bibliometric analysis on Peruvian research contribution to COVID-19 pandemic and PRISMA checklist employed in the systematic review.
DOI: 10.6084/m9.figshare.26940910.v1
title: Contaminant loads in high river flows and their estimation

description: Contains raw N and P fraction loads via LOADEST and WRTDS (plus performance metrics for WRDTS models), their classification by flow percentile, and the predictors used and estimates of loads in high river flows.High frequency data for nitrate and total P (via turbidity) are also given.
DOI: 10.15468/dl.2x2q59
title: Occurrence Download

description: A dataset containing 11356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Pieris brassicae (Linnaeus, 1758)"
 ]
}

 The dataset includes 11356 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009617-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24418921.v1
title: Root Cause Analysis - 5 Why Template

description: Os Defeitos que ocorrem em produção podem ser analisados através da técnica de Análise de Causa Raiz (<i>Root Cause Analisys</i> - RCA), utilizando este <i>template</i> dos 5 Porquês (<i>5 Why</i>). O RCA é um termo abrangente que descreve uma coleção de métodos de solução de problemas usados ​​para identificar a causa real de um problema de não conformidade ou qualidade. É o processo de definição, compreensão e solução de um problema.