cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2m0j06
title: CCDC 2413567: Experimental Crystal Structure Determination

description: Related Article: Jizhou Dong, Jinchao Ma, Shuyue Xu, Xingyang Cui, Hua Qian, Jean'ne Shreeve|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17234856
title: VR environment for the course "In search of the Masses in Antiquity"

description: DescriptionThis is a 3D model of a part of Rome, produced for the course "In Search of the Masses in Antiquity". Includes some crowds and a procession, to enable a crowd perspective and reflect on specific hypotheses and reconstructions. The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places', in collaboration with course teacher Danielle Slootjes.

The emulated situation is the triumph of the Bellum Judaicum. For this situation, compare the account of Flavius Josephus and other historical and iconographic accounts of this event with actual space. Bringing this into 3D space allows students to have more input available than through the historical texts and imagery: the line of sights, spatiality and awareness of being in a crowd, watching a triumph. A fictional central area gives entry to the two scenes.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of a part of Rome, including buildings and humanoid models- Three .spoke files that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset.  After which, one by one the scenes are published from spoke, and by copying and pasting the url of the other rooms in the central room, it can be customised for a new upload.

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5517/ccdc.csd.cc2n60nk
title: CCDC 2448648: Experimental Crystal Structure Determination

description: Related Article: Kacper Kisiel, Piotr Banachowicz, Dorota Gryko|2025|CSD Communication|||
description: Related Article: Kacper Kisiel, Piotr Banachowicz, Aleksander Mitroo, Dorota Gryko|2025|Eur.J.Org.Chem.|28|e202500600|doi:10.1002/ejoc.202500600
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17234855
title: VR environment for the course "In search of the Masses in Antiquity"

description: DescriptionThis is a 3D model of a part of Rome, produced for the course "In Search of the Masses in Antiquity". Includes some crowds and a procession, to enable a crowd perspective and reflect on specific hypotheses and reconstructions. The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places', in collaboration with course teacher Danielle Slootjes.

The emulated situation is the triumph of the Bellum Judaicum. For this situation, compare the account of Flavius Josephus and other historical and iconographic accounts of this event with actual space. Bringing this into 3D space allows students to have more input available than through the historical texts and imagery: the line of sights, spatiality and awareness of being in a crowd, watching a triumph. A fictional central area gives entry to the two scenes.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of a part of Rome, including buildings and humanoid models- Three .spoke files that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset.  After which, one by one the scenes are published from spoke, and by copying and pasting the url of the other rooms in the central room, it can be customised for a new upload.

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5517/ccdc.csd.cc2p72np
title: CCDC 2479462: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p72pq
title: CCDC 2479463: Experimental Crystal Structure Determination

description: Related Article: Dongjing Hong|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7q7x
title: CCDC 2480069: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7stk
title: CCDC 2480149: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7q9z
title: CCDC 2480071: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7qj6
title: CCDC 2480078: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.17234540
title: VR environment for the course "Lieux de Mémoire"

description: DescriptionThis is a 3D model of Troy, produced for the course "Lieux de Mémoire. Space, Story and the Construction of Memory". The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places' in collaboration with course teacher Gert Jan van Wijngaarden.

This model contains three scenes based on excavations in Troy, each with a new added phase of reconstruction: the first being the archaeological area, the second the architectural reconstruction and the third being the addition of myths and stories to these finds. A fictional central area forms the fourth scene, with the purpose of giving entry to the other scenes.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of Troy - Four .spoke files that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset. After which, one by one the scenes are published from spoke, and by copying and pasting the url of the other rooms in the central room, it can be customised for a new upload.

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5281/zenodo.17234541
title: VR environment for the course "Lieux de Mémoire"

description: DescriptionThis is a 3D model of Troy, produced for the course "Lieux de Mémoire. Space, Story and the Construction of Memory". The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places' in collaboration with course teacher Gert Jan van Wijngaarden.

This model contains three scenes based on excavations in Troy, each with a new added phase of reconstruction: the first being the archaeological area, the second the architectural reconstruction and the third being the addition of myths and stories to these finds. A fictional central area forms the fourth scene, with the purpose of giving entry to the other scenes.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of Troy - Four .spoke files that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset. After which, one by one the scenes are published from spoke, and by copying and pasting the url of the other rooms in the central room, it can be customised for a new upload.

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5517/ccdc.csd.cc2p7qk7
title: CCDC 2480079: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7syp
title: CCDC 2480153: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7ql8
title: CCDC 2480080: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7rf4
title: CCDC 2480106: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7rh6
title: CCDC 2480108: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7rrg
title: CCDC 2480116: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2p7szq
title: CCDC 2480154: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.13854577
title: S75 | CyanoMetDB | Comprehensive database of secondary metabolites from cyanobacteria

description: CyanoMetDB is a comprehensive database of secondary metabolites from cyanobacteria manually curated from primary references described in Jones et al (2021), DOI: 10.1016/j.watres.2021.117017. Latest update: Sept. 2024 (V03). Dataset DOI: 10.5281/zenodo.4551528.

CyanoMetDB is a comprehensive database of secondary metabolites from cyanobacteria manually curated from primary references described in Jones et al (2021), DOI: 10.1016/j.watres.2021.117017 (preprint DOI: 10.1101/2020.04.16.038703). This upload contains the 2024 release. Please cite Jones et al (2021) DOI: 10.1016/j.watres.2021.117017 and this record Janssen et al (2024) DOI: 10.5281/zenodo.13854577 when using this CyanoMetDB Version 3!

Contents: 

CyanoMetDB XLSX database (2024 release): CyanoMetDB_Version03.xlsx

Additional files for workflows:

CSV format: CyanoMetDB_V03_2024.csvMetFrag local CSV file (original database abridged and reformatted for use in MetFrag): CyanoMetDB_V03_2024_MetFrag.csv Additional files for matching InChIKeys (rapid suspect flagging): CyanoMetDB_V03_2024_InChIKeys.txt

Corresponding author: Elisabeth Janssen (Eawag): Elisabeth.Janssen@eawag.ch
description: Please cite both the original work (Jones et al, 2020, DOI: 10.1016/j.watres.2021.117017) and this Zenodo deposition (Janssen et al, 2024, DOI: 10.5281/zenodo.13854577) when using CyanoMetDB Version 3. Contact: Elisabeth Janssen (Elisabeth.Janssen@eawag.ch)
DOI: 10.5281/zenodo.17234289
title: VR environment for the course "Historical Archaeology"

description: DescriptionThis is a 3D reconstruction of the Jordaan in the 19th century, produced for the course "Historical Archaeology". The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places' in collaboration with course teacher Vladimir Stissi.

This model contains a few houses by which photos from the 'beeldarchief' can be compared by students, to understand the spatiality and layout of the neighbourhood and houses.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of the Jordaan in the 19th century and a single row of houses- A .spoke file that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset 

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5281/zenodo.17234290
title: VR environment for the course "Historical Archaeology"

description: DescriptionThis is a 3D reconstruction of the Jordaan in the 19th century, produced for the course "Historical Archaeology". The model was created by the 4D Research Lab of the University of Amsterdam for the project 'Virtual Past Places' in collaboration with course teacher Vladimir Stissi.

This model contains a few houses by which photos from the 'beeldarchief' can be compared by students, to understand the spatiality and layout of the neighbourhood and houses.

This model is accessible as a VR room using Hubs Cloud software (virtualplaces-uva.eu).For reproducability and reuse, consult the manual at https://doi.org/10.21942/uva.30490373 and follow the instructions to set up your own Hubs Cloud instance.

This dataset includes:- The 3D models (.glb) of the Jordaan in the 19th century and a single row of houses- A .spoke file that can be imported using a Hubs Spoke instance, which can be used to make a Hubs Room after reuploading the data in this dataset 

Funding and contextVirtual Past Places has been made possible by a grant, the 'Stimuleringsregeling Online Onderwijs' from the Ministry of Education, Culture and Science (Onderwijs, Cultuur en Wetenschap, OCW), coordinated by SURF, the cooperative association of Dutch educational and research institutions. Virtual Past Places includes open access publication of all developed teaching materials as Open Educational Resources, the development of training materials, and the organisation of inspiration and counselling sessions for peers.
DOI: 10.5517/ccdc.csd.cc2p7rsh
title: CCDC 2480117: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.4551528
title: S75 | CyanoMetDB | Comprehensive database of secondary metabolites from cyanobacteria

description: CyanoMetDB is a comprehensive database of secondary metabolites from cyanobacteria manually curated from primary references described in Jones et al (2021), DOI: 10.1016/j.watres.2021.117017. Latest update: Sept. 2024 (V03). Dataset DOI: 10.5281/zenodo.4551528.

CyanoMetDB is a comprehensive database of secondary metabolites from cyanobacteria manually curated from primary references described in Jones et al (2021), DOI: 10.1016/j.watres.2021.117017 (preprint DOI: 10.1101/2020.04.16.038703). This upload contains the 2024 release. Please cite Jones et al (2021) DOI: 10.1016/j.watres.2021.117017 and this record Janssen et al (2024) DOI: 10.5281/zenodo.13854577 when using this CyanoMetDB Version 3!

Contents: 

CyanoMetDB XLSX database (2024 release): CyanoMetDB_Version03.xlsx

Additional files for workflows:

CSV format: CyanoMetDB_V03_2024.csvMetFrag local CSV file (original database abridged and reformatted for use in MetFrag): CyanoMetDB_V03_2024_MetFrag.csv Additional files for matching InChIKeys (rapid suspect flagging): CyanoMetDB_V03_2024_InChIKeys.txt

Corresponding author: Elisabeth Janssen (Eawag): Elisabeth.Janssen@eawag.ch
description: Please cite both the original work (Jones et al, 2020, DOI: 10.1016/j.watres.2021.117017) and this Zenodo deposition (Janssen et al, 2024, DOI: 10.5281/zenodo.13854577) when using CyanoMetDB Version 3. Contact: Elisabeth Janssen (Elisabeth.Janssen@eawag.ch)
DOI: 10.5517/ccdc.csd.cc2p7rtj
title: CCDC 2480118: Experimental Crystal Structure Determination

description: Related Article: Liuxi Yang|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.