cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25934/00005671.1
title: IPD datapackage for study 'A Randomized, Double-blind Study of Safety and Reduction in Signs and Symptoms During Treatment With Tocilizumab Versus Placebo, in Combination With Methotrexate, in Patients With Moderate to Severe Active Rheumatoid Arthritis and Inadequate Response to Anti-TNF Therapy' included in Research Request: 'Predicting the Treatment Response of Adalimumab for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005714.1
title: IPD datapackage for study 'A Randomized, Placebo-controlled, Double-blind, Multicenter Study to Evaluate the Safety and Efficacy of Rituximab in Combination With Methotrexate in Patients With Active Rheumatoid Arthritis Who Have Had an Inadequate Response to Anti-TNF Alpha Therapies' included in Research Request: 'Predicting the Treatment Response of Adalimumab for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005696.1
title: IPD datapackage for study 'A Randomized, Placebo Controlled, Double-blind, Parallel Group, International Study to Evaluate the Safety and Efficacy of Rituximab in Combination With Methotrexate, Compared to Methotrexate Monotherapy, in Patients With Active Rheumatoid Arthritis' included in Research Request: 'Predicting the Treatment Response of Adalimumab for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005686.1
title: IPD datapackage for study 'A Phase III, Randomized, Double-Blind, Placebo-Controlled, Multicenter Study of Retreatment With Rituximab in Subjects With Rheumatoid Arthritis Receiving Background Methotrexate' included in Research Request: 'Predicting the Treatment Response of Adalimumab for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005590.1
title: IPD datapackage for study 'A Randomized, Double-blind, Parallel-group Study to Evaluate the Safety and Efficacy of Tocilizumab (TCZ) Versus Placebo in Combination With Disease Modifying Antirheumatic Drugs (DMARDs) in Patients With Moderate to Severe Active Rheumatoid Arthritis (RA)' included in Research Request: 'Predicting the Treatment Response of Biologics for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.25934/00005799.1
title: IPD datapackage for study 'An Open Label Study of the Efficacy and Safety of Re-treatments With Rituximab (MabThera/Rituxan) in Patients With Active Rheumatoid Arthritis Who Have Had an Inadequate Response to Anti-TNFa Therapies' included in Research Request: 'Predicting the Treatment Response of Biologics for Individual Patients with Rheumatoid Arthritis: An Individual Participant Data Meta-Analysis '

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.4645597
title: FTIR_spectra_Pali_Hawaii_Demouchy_Tommasi_2021

description: FTIR spectra corresponding to the manuscript by Demouchy and Tommasi to be submitted to EPSL in 2021. The spectra are all normalized to a thickness of 1 cm and correspond to the spectra given into the manuscript (Figures 3; 4 and S3). Contact the author for get acces to raw data (sylvie.demouchy@umontpellier.fr).
description: {"references": ["Demouchy and Tommasi, From dry to damp in stiff mantle lithosphere by reactive melt percolation atop the Hawaiian plume, in prep for EPSL"]}
DOI: 10.5281/zenodo.4645596
title: FTIR_spectra_Pali_Hawaii_Demouchy_Tommasi_2021

description: FTIR spectra corresponding to the manuscript by Demouchy and Tommasi to be submitted to EPSL in 2021. The spectra are all normalized to a thickness of 1 cm and correspond to the spectra given into the manuscript (Figures 3; 4 and S3). Contact the author for get acces to raw data (sylvie.demouchy@umontpellier.fr).
description: {"references": ["Demouchy and Tommasi, From dry to damp in stiff mantle lithosphere by reactive melt percolation atop the Hawaiian plume, in prep for EPSL"]}
DOI: 10.5281/zenodo.4645964
title: NMR-Guided Rational Engineering of Endocellulase from Acidothermus Cellulolyticus for Reducing Product Inhibition

description: These are the plumed input files needed to reproduce the funnel metadynamics results for cellobiose binding to WT 1ECE, Y245G mutant, and W212A mutant.
DOI: 10.15468/b4qg5s
title: Description of a new species of Toumeyella Cockerell (Hemiptera: Coccomorpha: Coccidae) on Crataegus mexicana Moc. and Sessé ex DC. (Rosaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kondo, Takumasa, González, Héctor (2018): Description of a new species of Toumeyella Cockerell (Hemiptera: Coccomorpha: Coccidae) on Crataegus mexicana Moc. and Sessé ex DC. (Rosaceae). Insecta Mundi 2018 (634): 1-9, DOI: http://doi.org/10.5281/zenodo.4645883
DOI: 10.5281/zenodo.4644688
title: Sanger sequencing the exon 2 of the gene PDE4D in DNA samples of an affected individual and his parents

description: This dataset contains chromatograms obtained by Sanger sequencing the exon 2 of <em>PDE4D </em>gene in DNA samples of the affected individual diagnosed with Acrodysostosis type 2 (ACRDYS2; autosomal dominant inheritance) and his parents. Sequencing was performed to identify the genetic cause of ACRDYS2 and to perform a family segregation analysis. Heterozygous d<em>e novo</em> DNA variant was identified in the affected individual's DNA. PDE4D_ex2_P_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the affected individual's (proband's) DNA sample with a heterozygous variant (position 375 in this chromatogram where reference G nucleotide and alteration C is detected) PDE4D_ex2_M_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the mother's DNA sample (position 372 depicts the same G nucleotide which is changed in proband's DNA but no variant in mother's DNA) PDE4D_ex2_T_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the father's DNA sample (position 372 depicts the same G nucleotide which is changed in proband's DNA but no variant in father's DNA)
DOI: 10.5281/zenodo.4644687
title: Sanger sequencing the exon 2 of the gene PDE4D in DNA samples of an affected individual and his parents

description: This dataset contains chromatograms obtained by Sanger sequencing the exon 2 of <em>PDE4D </em>gene in DNA samples of the affected individual diagnosed with Acrodysostosis type 2 (ACRDYS2; autosomal dominant inheritance) and his parents. Sequencing was performed to identify the genetic cause of ACRDYS2 and to perform a family segregation analysis. Heterozygous d<em>e novo</em> DNA variant was identified in the affected individual's DNA. PDE4D_ex2_P_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the affected individual's (proband's) DNA sample with a heterozygous variant (position 375 in this chromatogram where reference G nucleotide and alteration C is detected) PDE4D_ex2_M_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the mother's DNA sample (position 372 depicts the same G nucleotide which is changed in proband's DNA but no variant in mother's DNA) PDE4D_ex2_T_F.ab1 is a chromatogram of exon 2 of <em>PDE4D </em>gene of the father's DNA sample (position 372 depicts the same G nucleotide which is changed in proband's DNA but no variant in father's DNA)
DOI: 10.18112/openneuro.ds003589.v1.0.0
title: Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas
DOI: 10.5517/ccdc.csd.cc241cxh
title: CCDC 1967536: Experimental Crystal Structure Determination

description: Related Article: Tatiana R. Amarante, Patrícia Neves, Filipe A. Almeida Paz, Ana C. Gomes, Martyn Pillinger, Anabela A. Valente, Isabel S. Gonçalves|2021|Cat.Sci.Tech.|11|2214|doi:10.1039/D1CY00055A
DOI: 10.5517/ccdc.csd.cc24gn7j
title: CCDC 1980287: Experimental Crystal Structure Determination

description: Related Article: Assunta D'Amato, Rosaria Schettini, Giovanni Pierri, Irene Izzo, Fabia Grisi, Consiglia Tedesco, Francesco De Riccardis, Chiara Costabile|2021|New J.Chem.|45|5410|doi:10.1039/D0NJ05931E
DOI: 10.5517/ccdc.csd.cc24w608
title: CCDC 1992339: Experimental Crystal Structure Determination

description: Related Article: Riley O’Shea, Can Gao, Tze Cin Owyong, Jonathan M. White, Wallace W. H. Wong|2021|Mat.Advs.|2|2031|doi:10.1039/D1MA00068C
DOI: 10.5517/ccdc.csd.cc24ys63
title: CCDC 1994825: Experimental Crystal Structure Determination

description: Related Article: Min Chen, Chun-Wen Geng, Ling Han, Yu Liu, Yong-Kai Yu, Ai-Min Lu, Chun-Long Yang, Guo-Hua Li|2021|New J.Chem.|45|5621|doi:10.1039/D1NJ00119A
DOI: 10.5517/ccdc.csd.cc258ltw
title: CCDC 2004268: Experimental Crystal Structure Determination

description: Related Article: Megha S. Deshpande, Sudesh M. Morajkar, Bikshandarkoil R. Srinivasan, Mini Bharati Ahirwar, Milind M. Deshmukh|2021|New J.Chem.|45|5437|doi:10.1039/D0NJ05921H
DOI: 10.5517/ccdc.csd.cc25dpcn
title: CCDC 2008191: Experimental Crystal Structure Determination

description: Related Article: Jiawei Hua, Mixue Bian, Tao Ma, Man Yang, Wei He, Zhao Yang, ChengKou Liu, Zheng Fang, Kai Guo|2021|Cat.Sci.Tech.|11|2299|doi:10.1039/D0CY02273J
DOI: 10.5517/ccdc.csd.cc25lx1r
title: CCDC 2014164: Experimental Crystal Structure Determination

description: Related Article: Fei Yuan, Hai-Xia Ma, Chun-Mei Yuan, Chun-Sheng Zhou, Huai-Ming Hu, Abhinav Kumar, Mohd Muddassir|2021|CrystEngComm|23|2404|doi:10.1039/D0CE01245A
DOI: 10.5517/ccdc.csd.cc25lx3t
title: CCDC 2014166: Experimental Crystal Structure Determination

description: Related Article: Fei Yuan, Hai-Xia Ma, Chun-Mei Yuan, Chun-Sheng Zhou, Huai-Ming Hu, Abhinav Kumar, Mohd Muddassir|2021|CrystEngComm|23|2404|doi:10.1039/D0CE01245A
DOI: 10.5517/ccdc.csd.cc25wb0f
title: CCDC 2022254: Experimental Crystal Structure Determination

description: Related Article: Ivan A. Mezentsev-Cherkes, Tatiana A. Shestimerova, Aleksei V. Medved'ko, Mikhail A. Kalinin, Alexey N. Kuznetsov, Zheng Wei, Evgeny V. Dikarev, Sergey Z. Vatsadze, Andrei V. Shevelkov|2021|CrystEngComm|23|2384|doi:10.1039/D0CE01730B
DOI: 10.5517/ccdc.csd.cc25wb1g
title: CCDC 2022255: Experimental Crystal Structure Determination

description: Related Article: Ivan A. Mezentsev-Cherkes, Tatiana A. Shestimerova, Aleksei V. Medved'ko, Mikhail A. Kalinin, Alexey N. Kuznetsov, Zheng Wei, Evgeny V. Dikarev, Sergey Z. Vatsadze, Andrei V. Shevelkov|2021|CrystEngComm|23|2384|doi:10.1039/D0CE01730B
DOI: 10.5517/ccdc.csd.cc25wb2h
title: CCDC 2022256: Experimental Crystal Structure Determination

description: Related Article: Ivan A. Mezentsev-Cherkes, Tatiana A. Shestimerova, Aleksei V. Medved'ko, Mikhail A. Kalinin, Alexey N. Kuznetsov, Zheng Wei, Evgeny V. Dikarev, Sergey Z. Vatsadze, Andrei V. Shevelkov|2021|CrystEngComm|23|2384|doi:10.1039/D0CE01730B
DOI: 10.5281/zenodo.4642453
title: Rapid imaging of special nuclear materials for nuclear non-proliferation and terrorism prevention

description: Data sets for the research article in Science Advances: Rapid imaging of special nuclear materials for nuclear non-proliferation and terrorism prevention
DOI: 10.5281/zenodo.4642452
title: Rapid imaging of special nuclear materials for nuclear non-proliferation and terrorism prevention

description: Data sets for the research article in Science Advances: Rapid imaging of special nuclear materials for nuclear non-proliferation and terrorism prevention
DOI: 10.5281/zenodo.4645899
title: AndroR2: A Dataset of Manually-Reproduced Bug Reports for Android apps

description: Software maintenance constitutes a large portion of the software development lifecycle. To carry out maintenance tasks, developers often need to understand and reproduce bug reports. As such, there has been increasing research activity coalescing around the notion of automating various activities related to bug reporting. A sizable portion of this research interest has focused on the domain of mobile apps. However, as research around mobile app bug reporting progresses, there is a clear need for a manually vetted and <em>reproducible </em>set of real-world bug reports that can serve as a benchmark for future work. This paper presents AndroR2: a dataset of 90 manually reproduced bug reports for Android apps listed on Google Play and hosted on GitHub, systematically collected via an in-depth analysis of 459 reports extracted from the GitHub issue tracker. For each reproduced report, AndroR2 includes the original bug report, an apk<strong> </strong>file for the buggy version of the app, an executable reproduction script, and metadata regarding the quality of the reproduction steps associated with the original report. We believe that the ANDROR2 dataset can be used to facilitate research in automatically analyzing, understanding, reproducing, localizing, and fixing bugs for mobile applications as well as other software maintenance activities more broadly.
DOI: 10.5281/zenodo.4645898
title: AndroR2: A Dataset of Manually-Reproduced Bug Reports for Android apps

description: Software maintenance constitutes a large portion of the software development lifecycle. To carry out maintenance tasks, developers often need to understand and reproduce bug reports. As such, there has been increasing research activity coalescing around the notion of automating various activities related to bug reporting. A sizable portion of this research interest has focused on the domain of mobile apps. However, as research around mobile app bug reporting progresses, there is a clear need for a manually vetted and <em>reproducible </em>set of real-world bug reports that can serve as a benchmark for future work. This paper presents AndroR2: a dataset of 90 manually reproduced bug reports for Android apps listed on Google Play and hosted on GitHub, systematically collected via an in-depth analysis of 459 reports extracted from the GitHub issue tracker. For each reproduced report, AndroR2 includes the original bug report, an apk<strong> </strong>file for the buggy version of the app, an executable reproduction script, and metadata regarding the quality of the reproduction steps associated with the original report. We believe that the ANDROR2 dataset can be used to facilitate research in automatically analyzing, understanding, reproducing, localizing, and fixing bugs for mobile applications as well as other software maintenance activities more broadly.
DOI: 10.21227/vz8g-sk32
title: Feb 1

description: --
DOI: 10.6084/m9.figshare.14336588
title: Gianlorenzo Bernini Drawings featured on Wikidata

description: This spreadsheet is a downloaded version of all information relating to drawings by Gianlorenzo Bernini held on Wikidata. <br>The data was downloaded using the following SQL query - https://w.wiki/396c. Where a drawing had multiple values related to a property (eg multiple possible dates) the first value was taken) <br>The spreadsheet should not be treated as canonical, but may act as a useful guide.
DOI: 10.6084/m9.figshare.14336588.v1
title: Gianlorenzo Bernini Drawings featured on Wikidata

description: This spreadsheet is a downloaded version of all information relating to drawings by Gianlorenzo Bernini held on Wikidata. <br>The data was downloaded using the following SQL query - https://w.wiki/396c. Where a drawing had multiple values related to a property (eg multiple possible dates) the first value was taken) <br>The spreadsheet should not be treated as canonical, but may act as a useful guide.
DOI: 10.7910/dvn/p4ul2i
title: Recorte da Base Cartográfica do Rio Grande do Sul (BCRS25v1) para a Microrregião do Litoral Norte

description: Recorte para a região do litoral norte da base cartográfica do estado do Rio Grande do Sul na escala 1:25.000 (BCRS25v1), disponibilizada pela Secretaria do Ambiente e Desenvolvimento Sustentável - SEMA em 2018. A região do litoral norte gaúcho foi considerada aquela composta pelos 25 municípios vinculados à Coordenadoria Regional de Educação 11. Foram mantidos apenas os vetores inseridos na região do litoral norte, com a exceção daqueles pertencentes à categoria Limites, que podem ser acessados diretamente no site do Instituto Brasileiro de Geografia e Estatística - IBGE, onde são regularmente atualizados. As camadas resultantes foram exportados para um arquivo no formato GeoPackage (GPKG).
DOI: 10.18112/openneuro.ds003590.v1.0.0
title: Robust joint registration of multiple stains and MRI for multimodal 3D histology reconstruction: Application to the Allen human brain atlas
DOI: 10.6084/m9.figshare.14330795.v1
title: An Immune Cell Atlas Reveals Dynamic COVID-19 Specific Neutrophil Programming Amendable to Therapy

description: SARS-CoV-2 is a novel coronavirus that causes acute respiratory distress syndrome (ARDS) and death. Innate immune cells are critical for host defense but are also the primary drivers of acute respiratory distress syndrome. The relationships between innate cellular responses in ARDS resulting from COVID-19 compared to other causes of ARDS, such as bacterial sepsis is unclear. Moreover, the beneficial cellular effects of dexamethasone therapy during severe COVID-19 remains speculative but understanding their mechanistic effects could improve rationally targeted drug design. We discovered that compared to bacterial septic ARDS, COVID-19 induced distinct neutrophil polarization characterized by either interferon (IFN) or prostaglandin (PG) active states. IFN polarization required the transcriptional regulators PRDM1, STAT1 and IRF1 while prostaglandin polarization was induced by E2F4. Bacterial ARDS neutrophils upregulated antibacterial molecules such as PLAC8 via STAT5b and demonstrated conventional transcription factors CEBPA and CEBPB. Steroid therapy rapidly altered IFN polarization, downregulated interferon responsive genes, and induced immunoretrained neutrophils withelevations of the decoy IL-1R2 regulatory receptor. Steroids induced the emergence of immature neutrophils expressing immunosuppressive molecules ARG1 and ANXA1. Moreover, steroids remodeled global cellular communication hierarchies by changing neutrophils from information receivers into information providers. Importantly, male patients had higher proportions of IFN-active neutrophils and a greater degree of steroid induced attenuation of cellular polarization. Indeed, the highest proportion of IFN-active neutrophils was associated with mortality. These results define neutrophil states unique to COVID-19 when contextualized to other life-threatening infections, thereby enhancing the relevance of our findings at the bedside. Furthermore, the clinical benefits of dexamethasone therapy are molecularly defined, and this information highlights essential molecular pathways to which improved therapeutic targeting can now be conceived.<br>
DOI: 10.26208/zvh2-h409
title: A model for oceanic melt rates under ice shelves using a balance-flux approach (CHICO)

description: A two-layer model of thermohaline ocean circulation under Antarctic ice shelves is described that predicts sub-oceanic ice-shelf melt rates given the basin geometries and ocean temperatures and salinities at the ice edges. The model builds on a series of similar models, using an upper plume layer and adding a balance-flux approach that enables it to be used for evolving land-ocean geometries without the need to pre-define individual basin outlines. Results are compared to Antarctic melt rates derived from satellite data. The model is shown to work for two simulated configurations of West Antarctica very different from modern. In Supporting Information several alternate model aspects are described, and results are tested against numerical solutions of the basic plume differential equations for 1-D flowlines.
DOI: 10.5517/ccdc.csd.cc25y68m
title: CCDC 2024060: Experimental Crystal Structure Determination

description: Related Article: Wu-Bo Du, Ning-Ning Wang, Chao Pan, Shao-Fei Ni, Li-Rong Wen, Ming Li, Lin-Bao Zhang|2021|Green Chemistry|23|2420|doi:10.1039/D1GC00027F
DOI: 10.5517/ccdc.csd.cc25syhf
title: CCDC 2019975: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Jun Ying, Xin-yue Zhang, Bao-yue Zhang, Ai-xiang Tian, Xiu-li Wang|2021|CrystEngComm|23|2424|doi:10.1039/D0CE01811B
DOI: 10.5517/ccdc.csd.cc25sygd
title: CCDC 2019974: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Jun Ying, Xin-yue Zhang, Bao-yue Zhang, Ai-xiang Tian, Xiu-li Wang|2021|CrystEngComm|23|2424|doi:10.1039/D0CE01811B
DOI: 10.5517/ccdc.csd.cc25syjg
title: CCDC 2019976: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Jun Ying, Xin-yue Zhang, Bao-yue Zhang, Ai-xiang Tian, Xiu-li Wang|2021|CrystEngComm|23|2424|doi:10.1039/D0CE01811B
DOI: 10.5517/ccdc.csd.cc25sykh
title: CCDC 2019977: Experimental Crystal Structure Determination

description: Related Article: Chen Wang, Jun Ying, Xin-yue Zhang, Bao-yue Zhang, Ai-xiang Tian, Xiu-li Wang|2021|CrystEngComm|23|2424|doi:10.1039/D0CE01811B