cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10279061
title: MOESM7 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 7: Table S4. Functional annotation of DEGs at 2 and 10 dpi obtained with the EdgeR method.
DOI: 10.6084/m9.figshare.10279052
title: MOESM6 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 6: Table S3. DEGs at 2 and 10 dpi obtained with several methods, including DESeq, DESeq2, NOISeq and EdgeR.
DOI: 10.6084/m9.figshare.10279061.v1
title: MOESM7 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 7: Table S4. Functional annotation of DEGs at 2 and 10 dpi obtained with the EdgeR method.
DOI: 10.6084/m9.figshare.10279052.v1
title: MOESM6 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 6: Table S3. DEGs at 2 and 10 dpi obtained with several methods, including DESeq, DESeq2, NOISeq and EdgeR.
DOI: 10.6084/m9.figshare.10279043
title: MOESM5 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 5: Table S2. Assembly statistics and sequence mapping. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10279043.v1
title: MOESM5 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 5: Table S2. Assembly statistics and sequence mapping. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.10279028
title: MOESM3 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 3: Table S1. Statistics of sequencing and filtering of raw data.
DOI: 10.6084/m9.figshare.10279028.v1
title: MOESM3 of Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae

description: Additional file 3: Table S1. Statistics of sequencing and filtering of raw data.
DOI: 10.6084/m9.figshare.10278998
title: MOESM5 of ATM controls DNA repair and mitochondria transfer between neighboring cells

description: Additional file 5: Figure S5. a–f Mitochondria transfer in ATMwt and ATM−/− fibroblasts upon irradiation. Mitochondria transfer was monitored between donor cells labeled with MitoTracker Deep Red (green, indicated with white marker) and 6–Gy irradiated acceptor cells labeled with MitoTracker Red (red, indicated with orange marker) after 24 h of co–culture. Nuclei were stained with DAPI. Co–culture of ATMwt and irradiated ATMwt fibroblasts (a and b), ATMwt and irradiated ATM−/− fibroblasts (c and d), ATM−/− and irradiated ATMwt fibroblasts (e), as well ATM−/− and irradiated ATM−/− fibroblasts (f). g Unilateral transfer of mitochondria from irradiated ATMwt (labeled with MitoTracker Deep Red) to ATM−/− fibroblasts (labeled with MitoTracker Green, indicated with white marker). h Unilateral transfer of mitochondria from ATMwt (labeled with MitoTracker Deep Red, indicated with white marker) to irradiated ATM−/− fibroblasts (labeled with MitoTracker Red). SRRF: super–resolution radial fluctuation images. Scale bars, 10 μm.
DOI: 10.6084/m9.figshare.10278998.v1
title: MOESM5 of ATM controls DNA repair and mitochondria transfer between neighboring cells

description: Additional file 5: Figure S5. a–f Mitochondria transfer in ATMwt and ATM−/− fibroblasts upon irradiation. Mitochondria transfer was monitored between donor cells labeled with MitoTracker Deep Red (green, indicated with white marker) and 6–Gy irradiated acceptor cells labeled with MitoTracker Red (red, indicated with orange marker) after 24 h of co–culture. Nuclei were stained with DAPI. Co–culture of ATMwt and irradiated ATMwt fibroblasts (a and b), ATMwt and irradiated ATM−/− fibroblasts (c and d), ATM−/− and irradiated ATMwt fibroblasts (e), as well ATM−/− and irradiated ATM−/− fibroblasts (f). g Unilateral transfer of mitochondria from irradiated ATMwt (labeled with MitoTracker Deep Red) to ATM−/− fibroblasts (labeled with MitoTracker Green, indicated with white marker). h Unilateral transfer of mitochondria from ATMwt (labeled with MitoTracker Deep Red, indicated with white marker) to irradiated ATM−/− fibroblasts (labeled with MitoTracker Red). SRRF: super–resolution radial fluctuation images. Scale bars, 10 μm.
DOI: 10.6084/m9.figshare.10278932
title: MOESM7 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 8. List of the designed annealing blocking oligonucleotides for the eukaryotic groups Stramenopiles, Alveolata, Rhizaria and Telonema. Characteristics and sequence coverage rates of fungal and non-fungal eukaryotic groups are given.
DOI: 10.6084/m9.figshare.10278929
title: MOESM6 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 7. Primer pairs suitable for the amplification of specific fungal phyla/subphyla. Characteristics of the primer pair and sequence coverage rate of the target group is indicated.
DOI: 10.6084/m9.figshare.10278932.v1
title: MOESM7 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 8. List of the designed annealing blocking oligonucleotides for the eukaryotic groups Stramenopiles, Alveolata, Rhizaria and Telonema. Characteristics and sequence coverage rates of fungal and non-fungal eukaryotic groups are given.
DOI: 10.6084/m9.figshare.10278923
title: MOESM5 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 5. Performance of the most promising primer pairs empirically tested on 12 fungal strains.
DOI: 10.6084/m9.figshare.10278929.v1
title: MOESM6 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 7. Primer pairs suitable for the amplification of specific fungal phyla/subphyla. Characteristics of the primer pair and sequence coverage rate of the target group is indicated.
DOI: 10.6084/m9.figshare.10278917
title: MOESM4 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 4. Annealing temperatures empirically evaluated for the most promising primer pairs. Two fungal strains, one of the Basidiomycota and one of the Ascomycota, served as template DNA. Intensity of the color indicates the strength of the amplification product detected by ethidium bromide staining. Red, template DNA from Taphrina deformans; Green, template DNA from Agaricus bisporus; *, optimal annealing temperature.
DOI: 10.6084/m9.figshare.10278923.v1
title: MOESM5 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 5. Performance of the most promising primer pairs empirically tested on 12 fungal strains.
DOI: 10.6084/m9.figshare.10278911
title: MOESM3 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 3. List of the seven most promising primer pairs for biodiversity assessments identified by in silico PCR. Primer pairs are suitable for different sequencing methods dependent on the expected amplicon size. Sequence coverage rate of diverse fungal and non-fungal eukaryotic groups as revealed by in silico PCR.
DOI: 10.6084/m9.figshare.10278917.v1
title: MOESM4 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 4. Annealing temperatures empirically evaluated for the most promising primer pairs. Two fungal strains, one of the Basidiomycota and one of the Ascomycota, served as template DNA. Intensity of the color indicates the strength of the amplification product detected by ethidium bromide staining. Red, template DNA from Taphrina deformans; Green, template DNA from Agaricus bisporus; *, optimal annealing temperature.
DOI: 10.6084/m9.figshare.10278905
title: MOESM2 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 2. List of the 436 fungi-specific primer pairs tested for their performance by in silico PCR. Primer pairs were grouped according to the expected amplicon size into three groups: S for small (≤600 bp), M for medium (600–1000 bp), and L for large size (&gt; 1000 bp).
DOI: 10.6084/m9.figshare.10278911.v1
title: MOESM3 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 3. List of the seven most promising primer pairs for biodiversity assessments identified by in silico PCR. Primer pairs are suitable for different sequencing methods dependent on the expected amplicon size. Sequence coverage rate of diverse fungal and non-fungal eukaryotic groups as revealed by in silico PCR.
DOI: 10.6084/m9.figshare.10278896
title: MOESM1 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 1. List of the 164 fungi-specific primers detected by a literature research. For each primer, performance, characteristics and source literature are provided.
DOI: 10.6084/m9.figshare.10278905.v1
title: MOESM2 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 2. List of the 436 fungi-specific primer pairs tested for their performance by in silico PCR. Primer pairs were grouped according to the expected amplicon size into three groups: S for small (≤600 bp), M for medium (600–1000 bp), and L for large size (&gt; 1000 bp).
DOI: 10.6084/m9.figshare.10278896.v1
title: MOESM1 of Correction to: A comprehensive fungi-specific 18S rRNA gene sequence primer toolkit suited for diverse research issues and sequencing platforms

description: Additional file 1. List of the 164 fungi-specific primers detected by a literature research. For each primer, performance, characteristics and source literature are provided.
DOI: 10.6084/m9.figshare.10278791
title: MOESM1 of Targeting the Formyl Peptide Receptor type 1 to prevent the adhesion of ovarian cancer cells onto mesothelium and subsequent invasion

description: Additional file 1: Figure S1. Adhesion and mesothelial invasion properties of uPAR and FPR1 lacking EOC cells. a. Fax analysis of human ovarian carcinoma A2780 cells with (CD87)-APC-conjugated anti-uPAR or PE-conjugated FPR1 antibodies. b. Cell adhesion of A2780 cells on 1% BSA (CTRL), Vn-, Fn-Lm or Coll-coated plates, in the presence or the absence of 10 nM RI-3. The number of adherent cells was expressed as a percentage of CTRL. Data are the means ± SD of three independent experiment. c. Mesothelium invasion by A2780 cells. HPMCs (5 × 103 cells/well) were seeded in E-16-well plates and allow to adhere for 20 h until they form a confluent monolayer. Then, A2780 cells suspended in growth medium plus/minus 10 nM RI-3 were seeded onto the mesothelial cell monolayer and invasion of mesothelium by A2780 cells was monitored in real-time as changes in Cell Index due to breaking of the monolayer integrity. Data represent mean ± SD from a quadruplicate experiment representative of 2replicates. Figure S2. Uncropped images of immunoblots from Fig. 5c.
DOI: 10.6084/m9.figshare.10278791.v1
title: MOESM1 of Targeting the Formyl Peptide Receptor type 1 to prevent the adhesion of ovarian cancer cells onto mesothelium and subsequent invasion

description: Additional file 1: Figure S1. Adhesion and mesothelial invasion properties of uPAR and FPR1 lacking EOC cells. a. Fax analysis of human ovarian carcinoma A2780 cells with (CD87)-APC-conjugated anti-uPAR or PE-conjugated FPR1 antibodies. b. Cell adhesion of A2780 cells on 1% BSA (CTRL), Vn-, Fn-Lm or Coll-coated plates, in the presence or the absence of 10 nM RI-3. The number of adherent cells was expressed as a percentage of CTRL. Data are the means ± SD of three independent experiment. c. Mesothelium invasion by A2780 cells. HPMCs (5 × 103 cells/well) were seeded in E-16-well plates and allow to adhere for 20 h until they form a confluent monolayer. Then, A2780 cells suspended in growth medium plus/minus 10 nM RI-3 were seeded onto the mesothelial cell monolayer and invasion of mesothelium by A2780 cells was monitored in real-time as changes in Cell Index due to breaking of the monolayer integrity. Data represent mean ± SD from a quadruplicate experiment representative of 2replicates. Figure S2. Uncropped images of immunoblots from Fig. 5c.
DOI: 10.6084/m9.figshare.10278770
title: MOESM6 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 6: Table S5. Gene Ontology enrichment analysis for Biological Process using differential RNAs found in TGF-β1 treated HPASMC-EVs. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.10278764
title: MOESM5 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 5: Table S4. RNA-Seq results and differential transciptome analyses of HPASMC-EVs treated with TGF-β and BMP4. (XLSX 6597 kb)
DOI: 10.6084/m9.figshare.10278770.v1
title: MOESM6 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 6: Table S5. Gene Ontology enrichment analysis for Biological Process using differential RNAs found in TGF-β1 treated HPASMC-EVs. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.10278758
title: MOESM4 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 4: Table S3. Gene Ontology enrichment analysis for Biological Process using differential RNAs found in TGF-β1 treated HPASMC-EVs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.10278758.v1
title: MOESM4 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 4: Table S3. Gene Ontology enrichment analysis for Biological Process using differential RNAs found in TGF-β1 treated HPASMC-EVs. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.10278764.v1
title: MOESM5 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 5: Table S4. RNA-Seq results and differential transciptome analyses of HPASMC-EVs treated with TGF-β and BMP4. (XLSX 6597 kb)
DOI: 10.6084/m9.figshare.10278752
title: MOESM3 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 3: Table S2. RNA-Seq results and differential transcriptome analyses of HPASMCs treated with TGF-β1 and BMP4. (XLSX 7595 kb)
DOI: 10.6084/m9.figshare.10278746
title: MOESM2 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 2: Table S1. Enrichment analysis of healthy HPASMC-EVs versus their donor HPASMCs. (XLSX 6647 kb)
DOI: 10.6084/m9.figshare.10278746.v1
title: MOESM2 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 2: Table S1. Enrichment analysis of healthy HPASMC-EVs versus their donor HPASMCs. (XLSX 6647 kb)
DOI: 10.6084/m9.figshare.10278752.v1
title: MOESM3 of Extracellular vesicle cross-talk between pulmonary artery smooth muscle cells and endothelium during excessive TGF-β signalling: implications for PAH vascular remodelling

description: Additional file 3: Table S2. RNA-Seq results and differential transcriptome analyses of HPASMCs treated with TGF-β1 and BMP4. (XLSX 7595 kb)
DOI: 10.6084/m9.figshare.10278659
title: MOESM1 of Prevalence and associated factors of burnout among Debre Berhan University medical students: a cross-sectional study

description: Additional file 1. Cleaned Data Used in the Analysis.
DOI: 10.6084/m9.figshare.10278659.v1
title: MOESM1 of Prevalence and associated factors of burnout among Debre Berhan University medical students: a cross-sectional study

description: Additional file 1. Cleaned Data Used in the Analysis.
DOI: 10.6084/m9.figshare.10278626
title: MOESM2 of Reduced sphingolipid hydrolase activities, substrate accumulation and ganglioside decline in Parkinson’s disease

description: Additional file 2. Data of individual patients.
DOI: 10.6084/m9.figshare.10278629
title: MOESM3 of Reduced sphingolipid hydrolase activities, substrate accumulation and ganglioside decline in Parkinson’s disease

description: Additional file 3. Statistics.
DOI: 10.6084/m9.figshare.10278626.v1
title: MOESM2 of Reduced sphingolipid hydrolase activities, substrate accumulation and ganglioside decline in Parkinson’s disease

description: Additional file 2. Data of individual patients.
DOI: 10.6084/m9.figshare.10278629.v1
title: MOESM3 of Reduced sphingolipid hydrolase activities, substrate accumulation and ganglioside decline in Parkinson’s disease

description: Additional file 3. Statistics.
DOI: 10.6084/m9.figshare.10278602
title: Additional file 1: of MiPepid: MicroPeptide identification tool using machine learning

description: Supplemental Data - Tables 1-5. (XLSX 6674 kb)
DOI: 10.6084/m9.figshare.10278605
title: MOESM1 of Interaction between position sense and force control in bimanual tasks

description: Additional file 1. Analysis of the movement and force strategies applied to solve the task. We analyzed the strategies used by the subjects for accomplishing the tasks, to verify if they can provide further explanations of the results presented in the manuscript. In Experiment 1 we found that the loading conditions influenced the kinematic strategy during the position matching task. In Experiment 2 the strategy adopted for bimanual force exertion was not influenced by symmetric/asymmetric arm configurations, but by handedness or hand preference effects. Figure S1. Example of speed and force profile.
DOI: 10.6084/m9.figshare.10278602.v1
title: Additional file 1: of MiPepid: MicroPeptide identification tool using machine learning

description: Supplemental Data - Tables 1-5. (XLSX 6674 kb)
DOI: 10.6084/m9.figshare.10278605.v1
title: MOESM1 of Interaction between position sense and force control in bimanual tasks

description: Additional file 1. Analysis of the movement and force strategies applied to solve the task. We analyzed the strategies used by the subjects for accomplishing the tasks, to verify if they can provide further explanations of the results presented in the manuscript. In Experiment 1 we found that the loading conditions influenced the kinematic strategy during the position matching task. In Experiment 2 the strategy adopted for bimanual force exertion was not influenced by symmetric/asymmetric arm configurations, but by handedness or hand preference effects. Figure S1. Example of speed and force profile.
DOI: 10.6084/m9.figshare.10278455
title: MOESM7 of Cloning and functional analysis of the FAD2 gene family from desert shrub Artemisia sphaerocephala

description: Additional file 7: Table S4. Nucleotide sequences of twenty-six FAD2 unigenes from A. sphaerocephala transcriptome.
DOI: 10.6084/m9.figshare.10278455.v1
title: MOESM7 of Cloning and functional analysis of the FAD2 gene family from desert shrub Artemisia sphaerocephala

description: Additional file 7: Table S4. Nucleotide sequences of twenty-six FAD2 unigenes from A. sphaerocephala transcriptome.
DOI: 10.6084/m9.figshare.10278440
title: MOESM3 of Cloning and functional analysis of the FAD2 gene family from desert shrub Artemisia sphaerocephala

description: Additional file 3: Table S2. Sixteen AsFAD2 putative polypeptide sequences from A. sphaerocephala.
DOI: 10.6084/m9.figshare.10278440.v1
title: MOESM3 of Cloning and functional analysis of the FAD2 gene family from desert shrub Artemisia sphaerocephala

description: Additional file 3: Table S2. Sixteen AsFAD2 putative polypeptide sequences from A. sphaerocephala.
DOI: 10.6084/m9.figshare.10278311
title: MOESM1 of Seroprevalence and associated risk factors of leptospirosis in slaughter pigs; a neglected public health risk, western Kenya

description: Additional file 1. Busia slaughter pigs leptospirosis data on pig demographic and husbandry practices characteristics and microscopic agglutination test results.
DOI: 10.6084/m9.figshare.10278311.v1
title: MOESM1 of Seroprevalence and associated risk factors of leptospirosis in slaughter pigs; a neglected public health risk, western Kenya

description: Additional file 1. Busia slaughter pigs leptospirosis data on pig demographic and husbandry practices characteristics and microscopic agglutination test results.
DOI: 10.6084/m9.figshare.10278236
title: MOESM1 of Mining and genomic characterization of resistance to tan spot, Stagonospora nodorum blotch (SNB), and Fusarium head blight in Watkins core collection of wheat landraces

description: Additional file 1: Table S1. Watkins core set of wheat landrace cultivars, their country of origin and mean disease score with standard error for tan spot, SNB, and FHB. Table S2. Analysis of variance (ANOVA) response to tan spot Ptr race 1, race 5, Stagonospora nodorum blotch (SNB), and Fusarium head blight (FHB). Table S3. SNP distribution across the three wheat genomes used for GWAS in 121 Watkins landrace cultivars (LCs). Table S4. List of genes in the candidate regions spanning the tan spot race 1, 5, and SNB resistance QTLs and their functional annotations. Table S5. Flanking Sequence of the most significant SNP markers associated with two major leaf spot diseases (tan spot Ptr race 1, race 5, and SNB).