cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12430085.v1
title: Manual Ground Truth Labels Image Dataset

description: This dataset contains the 16 bit of the manually annotated ground truth labels for the nuclei that were used both in training (Labelled as "Original") or inference (Labelled as "Biological" or "Technical) for the MRCNN and FPN2-WS networks
DOI: 10.6084/m9.figshare.12429941
title: Table S3 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all information regarding the analysis of intrinsic incompatibilities
DOI: 10.6084/m9.figshare.12429944.v1
title: Table S4 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains the species and GeneBank accession numbers for the phylogenetic tree
DOI: 10.6084/m9.figshare.12429935
title: Table S1 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all studies returned from keyword searches
DOI: 10.6084/m9.figshare.12429932
title: Table S2 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all studies included in the meta-analyses
DOI: 10.6084/m9.figshare.12429941.v1
title: Table S3 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all information regarding the analysis of intrinsic incompatibilities
DOI: 10.6084/m9.figshare.12429932.v1
title: Table S2 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all studies included in the meta-analyses
DOI: 10.6084/m9.figshare.12429935.v1
title: Table S1 from Evolutionary dynamics of pre- and postzygotic reproductive isolation in cichlid fishes

description: This table contains all studies returned from keyword searches
DOI: 10.6084/m9.figshare.12429803
title: Assessment of recent alcohol consumption by detecting ethyl glucuronide and ethyl sulphate level among traffic accident patients

description: <b>Objective:</b> This study aims to explain whether EtG and EtS, which are two non-oxidative ethanol metabolites secreted by the liver and used as markers of alcohol intake related to an incident, were also present in whole blood samples of patients with traffic accident injuries. <b>Methods:</b> EtG and EtS concentrations in all of the whole blood samples were sent to the Forensic Medicine Department of Cukurova University for testing Blood Alcohol Concentrations (BAC) via validated liquid chromatography-tandem mass spectrometer method. <b>Results:</b> The scope of the study covers 200 patients that were admitted to medical services within 12 h following the incident. Of all patients 16.5% were found to be BAC positive, while 35.5 and 23.5 were positive for EtG and EtS, respectively. All samples with a positive BAC result were also positive for EtG and EtS. <b>Conclusion:</b> Detection of EtG and EtS, minor metabolites along with ethanol in the blood can serve as an objective tool to provide further analysis regarding alcohol-related traffic accidents at emergency services.
DOI: 10.6084/m9.figshare.12429803.v1
title: Assessment of recent alcohol consumption by detecting ethyl glucuronide and ethyl sulphate level among traffic accident patients

description: <b>Objective:</b> This study aims to explain whether EtG and EtS, which are two non-oxidative ethanol metabolites secreted by the liver and used as markers of alcohol intake related to an incident, were also present in whole blood samples of patients with traffic accident injuries. <b>Methods:</b> EtG and EtS concentrations in all of the whole blood samples were sent to the Forensic Medicine Department of Cukurova University for testing Blood Alcohol Concentrations (BAC) via validated liquid chromatography-tandem mass spectrometer method. <b>Results:</b> The scope of the study covers 200 patients that were admitted to medical services within 12 h following the incident. Of all patients 16.5% were found to be BAC positive, while 35.5 and 23.5 were positive for EtG and EtS, respectively. All samples with a positive BAC result were also positive for EtG and EtS. <b>Conclusion:</b> Detection of EtG and EtS, minor metabolites along with ethanol in the blood can serve as an objective tool to provide further analysis regarding alcohol-related traffic accidents at emergency services.
DOI: 10.6084/m9.figshare.12429710
title: Integrating Stakeholders’ Perceptions into Decision-Making for Ecosystem-Based Fisheries Management

description: Ecosystem-based fisheries management (EBFM) is a more holistic alternative to single-species management. Currently, all eight regional Fishery Management Councils in the U.S. are carrying out EBFM planning or implementation. However, uncertainty exists on what principles and strategies are most effective to implement EBFM. In this study, council members in the New England and Mid-Atlantic Fishery Management Councils were interviewed on their perceptions of EBFM and aspects related to its implementation. Results of these interviews were used to develop a survey to assess fishers’ opinions and investigate their levels of acceptance of concepts prioritized by council members. While in general, council members emphasized considerations of the ecosystem as characterizing EBFM, fishers focused on aspects of social impacts and fishers’ participation in decision making. Results of this study provide important information about the perceptions of different stakeholders on the implementation of EBFM in the Northeast U.S and can be used to guide EBFM implementation and facilitate communication between stakeholders by elucidating on priorities and areas of convergence and divergence of ideas. This research also tested a two-step approach to integrate multiple stakeholder input to assess and evaluate knowledge to inform EBFM decisions that are adaptive and context specific.
DOI: 10.6084/m9.figshare.12429710.v1
title: Integrating Stakeholders’ Perceptions into Decision-Making for Ecosystem-Based Fisheries Management

description: Ecosystem-based fisheries management (EBFM) is a more holistic alternative to single-species management. Currently, all eight regional Fishery Management Councils in the U.S. are carrying out EBFM planning or implementation. However, uncertainty exists on what principles and strategies are most effective to implement EBFM. In this study, council members in the New England and Mid-Atlantic Fishery Management Councils were interviewed on their perceptions of EBFM and aspects related to its implementation. Results of these interviews were used to develop a survey to assess fishers’ opinions and investigate their levels of acceptance of concepts prioritized by council members. While in general, council members emphasized considerations of the ecosystem as characterizing EBFM, fishers focused on aspects of social impacts and fishers’ participation in decision making. Results of this study provide important information about the perceptions of different stakeholders on the implementation of EBFM in the Northeast U.S and can be used to guide EBFM implementation and facilitate communication between stakeholders by elucidating on priorities and areas of convergence and divergence of ideas. This research also tested a two-step approach to integrate multiple stakeholder input to assess and evaluate knowledge to inform EBFM decisions that are adaptive and context specific.
DOI: 10.6084/m9.figshare.12429431
title: ESM1 from Speciation through chromosomal fusion and fission in Lepidoptera

description: Supplementary tables ESM1.1 to ESM1.6
DOI: 10.6084/m9.figshare.12429431.v1
title: ESM1 from Speciation through chromosomal fusion and fission in Lepidoptera

description: Supplementary tables ESM1.1 to ESM1.6
DOI: 10.6084/m9.figshare.12429359
title: Size data of Corbula gibba from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429365
title: Genus-level compositional data from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429356
title: Source code in R for analyses of sensitivity of shifts to time averaging from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429365.v1
title: Genus-level compositional data from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429359.v1
title: Size data of Corbula gibba from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429347
title: Effects of time averaging on regime-shift detection from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429350
title: Source code in R for size analyses from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429293
title: R Wilcoxon test for categories.pdfVisual recognition memory in spider monkeys

description: Code in R used to perform Wilcoxon test to compare the performance in each category
DOI: 10.6084/m9.figshare.12429296
title: R glmm recognition.pdf

description: Gode for GLMM in R
DOI: 10.6084/m9.figshare.12429296.v1
title: R glmm recognition.pdf

description: Gode for GLMM in R
DOI: 10.6084/m9.figshare.12429350.v1
title: Source code in R for size analyses from Ecological regime shift preserved in the Anthropocene stratigraphic record

description: Palaeoecological data are unique historical archives that extend back far beyond the last several decades of ecological observations. However, the fossil record of continental shelves has been perceived as too coarse (with centennial-millennial resolution) and incomplete to detect processes occurring at yearly or decadal scales relevant to ecology and conservation. Here, we show that the youngest (Anthropocene) fossil record on the northern Adriatic continental shelf provides decadal-scale resolution that accurately documents an abrupt ecological change affecting benthic communities during the twentieth century. The magnitude and the duration of the twentieth century shift in body size of the bivalve <i>Corbula gibba</i> is unprecedented given that regional populations of this species were dominated by small-size classes throughout the Holocene. The shift coincided with compositional changes in benthic assemblages, driven by an increase from approximately 25% to approximately 70% in median per-assemblage abundance of <i>C. gibba</i>. This regime shift increase occurred preferentially at sites that experienced at least one hypoxic event per decade in the twentieth century. Larger size and higher abundance of <i>C. gibba</i> likely reflect ecological release as it coincides with an increase in the frequency of seasonal hypoxia that triggered mass mortality of competitors and predators. Higher frequency of hypoxic events is coupled with a decline in the depth of intense sediment mixing by burrowing benthic organisms from several decimetres to less than 20 cm, significantly improving the stratigraphic resolution of Anthropocene fossil record and making it possible to detect sub-centennial ecological changes on continental shelves.
DOI: 10.6084/m9.figshare.12429245
title: BASEMLMG.xlsx

description: Data base from data collected in spider monkey in a match-to-sample task
DOI: 10.6084/m9.figshare.12429224
title: wilcox test.xlsx

description: Data base for comparison of Wilcoxon test. The data belong to a group of spider monkeys that solve a task of match-to-sample task. Data was separated in sheets and each one contain the data from different list sample size (3, 4, or 5).
DOI: 10.6084/m9.figshare.12429245.v1
title: BASEMLMG.xlsx

description: Data base from data collected in spider monkey in a match-to-sample task