cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.29279219
title: Genomic characterization and insights into the belted coat pattern of a local, reconstituted pig population

description: The Cinghiato pig population originates from a breeding project aimed at reconstituting an extinct local swine breed, historically depicted in frescoes in Umbria, Central Italy. The selection strategy employed a reconstruction breeding program, choosing mating pairs based on the unique coat phenotype represented in these artworks. Unlike the traditional Cinta Senese breed, Cinghiato pigs exhibit a white belt encircling the trunk, while their forelimbs remain black. This study explores the genetic background of the belted coat pattern observed in the heterogeneous reconstituted population. Twenty-two pigs were genotyped using the Porcine GGP 80K SNP BeadChip. Genetic analyses were conducted to assess population structure and diversity, with comparisons made to other Italian pig breeds and wild boars. Findings reveal moderate genetic diversity within the Cinghiato population. Runs of Homozygosity patterns suggest historical inbreeding events. Moreover, several genomic regions were associated with traits relevant to niche pork production, including feed intake, leg conformation, and fat deposition. Polymorphisms were detected in 10 coat color-related genes (<i>KIT, MC1R, ASIP, EDNRB, KITLG, MITF, OCA2, PAX3, SOX10</i>, and <i>TYRP1</i>). Although some candidate variants were identified, this preliminary study highlights the need for further research to clarify the genetic mechanisms underlying the phenotypic variability of belted coat patterns.
DOI: 10.15468/dl.49h5du
title: Occurrence Download

description: A dataset listing the 5422 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((174.66525 -37.0197,174.86601 -37.0197,174.86601 -36.75988,174.66525 -36.75988,174.66525 -37.0197))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2020-2025"
 ]
}

 The dataset's 5422 records were derived from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047125-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17630/126aaf5b-3a8e-464c-beb0-0ec6724ab582
title: Data underpinning - Nanoimprinted Distributed Feedback Lasing of Solution Processed Hybrid Perovskites
DOI: 10.15468/dl.d9kfnu
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.848 -1.362819, 103.777717 -1.368385, 103.709164 -1.384945, 103.644027 -1.412093, 103.58391 -1.44916, 103.530292 -1.495233, 103.484493 -1.54918, 103.447642 -1.609671, 103.420645 -1.675219, 103.404168 -1.744209, 103.398618 -1.814944, 103.404134 -1.885681, 103.420579 -1.954679, 103.447551 -2.020239, 103.484387 -2.080746, 103.53018 -2.134709, 103.583803 -2.1808, 103.643937 -2.217882, 103.709098 -2.245042, 103.777683 -2.26161, 103.848 -2.267179, 103.918317 -2.26161, 103.986902 -2.245042, 104.052063 -2.217882, 104.112197 -2.1808, 104.16582 -2.134709, 104.211613 -2.080746, 104.248449 -2.020239, 104.275421 -1.954679, 104.291866 -1.885681, 104.297382 -1.814944, 104.291832 -1.744209, 104.275355 -1.675219, 104.248358 -1.609671, 104.211507 -1.54918, 104.165708 -1.495233, 104.11209 -1.44916, 104.051973 -1.412093, 103.986836 -1.384945, 103.918283 -1.368385, 103.848 -1.362819))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047150-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29293932
title: Novel polymorphism at <i>ARHGAP24</i> gene and its association with growth traits in Hu sheep

description: It is essential to identify potential genes and genetic variants associated with growth traits to enhance sheep breeding. Previous studies have suggested that the Rho GTPase-activating protein 24 (<i>ARHGAP24</i>) gene may influence the growth of some animals. However, no association has been established between polymorphisms in the <i>ARHGAP24</i> gene and sheep growth traits. In this study, single-nucleotide polymorphisms (SNPs) in the <i>ARHGAP24</i> gene of Hu sheep were detected, and functional SNPs associated with Hu sheep growth traits were identified. Twenty-six SNPs were discovered in Hu sheep. Association analysis revealed NC_056059.1:g.455981A &gt; G was significantly associated with average daily gain from six months to one year of age, while NC_056059.1:g.456083 A &gt; G was significantly associated with average daily gain from weaning to six months of age. The relative fluorescence activity (firefly luciferase and sea kidney luciferase) of haplotype GGGG was significantly lower than that of haplotypes GGAA, AAAA and AAGG. Furthermore, <i>ARHGAP24</i> mRNA expression in the longissimus dorsi muscle of six-months-old sheep was significantly lower than birth sheep. The results showed that NC_056059.1:g.455981A &gt; G and g NC_056059.1:g.456083A &gt; G of <i>ARHGAP24</i> gene were related to some growth traits of Hu sheep, and <i>ARHGAP24</i> mRNA was differentially expressed in longissimus dorsi muscle of Hu sheep at different months of age, which could be used as a candidate gene for molecular marker-assisted selection of Hu sheep.
DOI: 10.6084/m9.figshare.29293932.v1
title: Novel polymorphism at <i>ARHGAP24</i> gene and its association with growth traits in Hu sheep

description: It is essential to identify potential genes and genetic variants associated with growth traits to enhance sheep breeding. Previous studies have suggested that the Rho GTPase-activating protein 24 (<i>ARHGAP24</i>) gene may influence the growth of some animals. However, no association has been established between polymorphisms in the <i>ARHGAP24</i> gene and sheep growth traits. In this study, single-nucleotide polymorphisms (SNPs) in the <i>ARHGAP24</i> gene of Hu sheep were detected, and functional SNPs associated with Hu sheep growth traits were identified. Twenty-six SNPs were discovered in Hu sheep. Association analysis revealed NC_056059.1:g.455981A &gt; G was significantly associated with average daily gain from six months to one year of age, while NC_056059.1:g.456083 A &gt; G was significantly associated with average daily gain from weaning to six months of age. The relative fluorescence activity (firefly luciferase and sea kidney luciferase) of haplotype GGGG was significantly lower than that of haplotypes GGAA, AAAA and AAGG. Furthermore, <i>ARHGAP24</i> mRNA expression in the longissimus dorsi muscle of six-months-old sheep was significantly lower than birth sheep. The results showed that NC_056059.1:g.455981A &gt; G and g NC_056059.1:g.456083A &gt; G of <i>ARHGAP24</i> gene were related to some growth traits of Hu sheep, and <i>ARHGAP24</i> mRNA was differentially expressed in longissimus dorsi muscle of Hu sheep at different months of age, which could be used as a candidate gene for molecular marker-assisted selection of Hu sheep.
DOI: 10.6084/m9.figshare.30651563
title: Single-step genome-wide association study of milk somatic cell scores across multi-cattle breeds in Ethiopia

description: Mastitis, an inflammation of the bovine mammary gland, reduces dairy productivity and poses significant health risks to Ethiopian dairy cattle. This study aimed to identify genomic regions associated with milk somatic cell score (SCS) and estimate its genetic parameters. The dataset included 1647 phenotypic cows, 6964 genotyped animals, and 39,976 single nucleotide polymorphism (SNP) markers. A single-step genome-wide association study (ssGWAS) was conducted, accounting for fixed effects of parity, genomic breed composition, altitude, and lactation stage, and random effects of herd-year-calving-season and permanent environment. Genetic variance using 20 adjacent SNPs sliding windows explaining ≥1% of the total genetic variance were used for candidate genes and quantitative trait loci (QTL) identifications. The estimated heritability of SCS was 0.11 ± 0.06. Genomic regions on BTA 15, 19, and 26 were identified associated with SCS, encompassing 116 genes, including MPP7, MPP8, MMP13, BIRC2, BIRC3, BTRC, SRSF1, and MPO, which are involved in immunity, inflammation, apoptosis, antimicrobial defense, and tissue remodeling. Gene enrichment analysis revealed that the genes are involved collagen catabolic process and IL-17 signaling pathway. These findings provide insights into genomic regions that could be targeted in genomic selection to improve mastitis resistance in Ethiopian dairy cattle.
DOI: 10.6084/m9.figshare.30651563.v1
title: Single-step genome-wide association study of milk somatic cell scores across multi-cattle breeds in Ethiopia

description: Mastitis, an inflammation of the bovine mammary gland, reduces dairy productivity and poses significant health risks to Ethiopian dairy cattle. This study aimed to identify genomic regions associated with milk somatic cell score (SCS) and estimate its genetic parameters. The dataset included 1647 phenotypic cows, 6964 genotyped animals, and 39,976 single nucleotide polymorphism (SNP) markers. A single-step genome-wide association study (ssGWAS) was conducted, accounting for fixed effects of parity, genomic breed composition, altitude, and lactation stage, and random effects of herd-year-calving-season and permanent environment. Genetic variance using 20 adjacent SNPs sliding windows explaining ≥1% of the total genetic variance were used for candidate genes and quantitative trait loci (QTL) identifications. The estimated heritability of SCS was 0.11 ± 0.06. Genomic regions on BTA 15, 19, and 26 were identified associated with SCS, encompassing 116 genes, including MPP7, MPP8, MMP13, BIRC2, BIRC3, BTRC, SRSF1, and MPO, which are involved in immunity, inflammation, apoptosis, antimicrobial defense, and tissue remodeling. Gene enrichment analysis revealed that the genes are involved collagen catabolic process and IL-17 signaling pathway. These findings provide insights into genomic regions that could be targeted in genomic selection to improve mastitis resistance in Ethiopian dairy cattle.
DOI: 10.5281/zenodo.17899669
title: Adult dataset
DOI: 10.5281/zenodo.17899670
title: Adult dataset
DOI: 10.15468/dl.8ttfn3
title: Occurrence Download

description: A dataset containing 37665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hyphantria cunea)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is not null",
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 37665 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047149-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17878166
title: Empirical treatment with valganciclovir in African infants living with HIV hospitalised with severe pneumonia: a randomised factorial controlled trial
DOI: 10.5281/zenodo.17878165
title: Empirical treatment with valganciclovir in African infants living with HIV hospitalised with severe pneumonia: a randomised factorial controlled trial
DOI: 10.15468/dl.83kdgf
title: Occurrence Download

description: A dataset containing 376288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tracheophyta",
 "DecimalLatitude is greater than or equal to -15.914722",
 "DecimalLatitude is less than or equal to -10.914722",
 "DecimalLongitude is greater than or equal to 140.0",
 "DecimalLongitude is less than or equal to 145.0",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE"
 ]
}

 The dataset includes 376288 records from 105 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047114-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25666/dataubfc-2024-06-27
title: Sample depth (m), TOC (wt. %, whole rock), TN (ppm, wholerock), TOC/TN, δ13Corg (‰ vs. PDB), and δ15Nbulk (‰ vs. air), for samples analyzed along the GT13 and GT16 drill cores (Serra Sul Formation, Amazonian Craton, Brazil).
title: Profondeur de l'échantillon (m), COT (% ), TN (ppm), COT/TN, δ13Corg (‰ VPDB) et δ15Nbulk (‰ VAIR), pour les échantillons analysés le long des carottes de forage GT13 et GT16 (Formation Serra Sul, Craton amazonien, Brésil)

description: Nitrogen and Carbon isotope data from the Neoarchean GT13 and GT16 drill cores (Serra Sul Formation, Amazonian Craton, Brazil)
description: Données isotopiques de l'azote et du carbone provenant des carottes de forage néoarchéennes GT13 et GT16 (Formation Serra Sul, Craton amazonien, Brésil)
description: Audience: Research
description: Project: Touring early Earth cycle evolution using sedimentary isotopes, I-SITE UBFC (COMUE UBFC)
description: Project: IUF EVOLINES, Institut Universitaire de France (IUF) (Ministry)
description: Project: Thèse de doctorat d' Alice Pellerin, Contrat doctoral Ministère de l'Enseignement Supérieur, de la Recherche et de l'Innovation (MESRI) (Ministry)
description: Label: GISMO (Geochemistry, Isotopes, Morphometrics and Molecular Ecology)
description: Label: I-SITE BFC (Initiative pour le SITE Bourgogne Franche-Comté)
description: Experimental data: isotope ratio mass spectrometer - IRMS
description: Données expérimentales: spéctrométrie de masse de rapport isotopique
DOI: 10.15468/wp82td
title: PINK - Dragonfly (Odonata) monitoring for the permanent surveillance of coastal areas in Flanders, Belgium

description: PINK - Dragonfly (Odonata) monitoring for the permanent surveillance of coastal areas in Flanders, Belgium is a sampling event dataset published by the Research Institute for Nature and Forest (INBO). The dataset contains over 2.500 dragonfly (Odonata) observations sampled between 2008 and 2014 at the Belgian coast. The dataset includes 34 species. The data are collected for the project PINK (Permanente Inventarisatie van de Natuurreservaten aan de Kust), which was commissioned by the Agency for Nature and Forest in 2007. The project started with the aim of mapping the natural values on the coast in a more systematic way. A first 3-year phase (PINK I) ran from 2008 to 2010, in which the methodology was set up and an initial assessment was conducted. A second phase (PINK II) ran from 2012 to 2014, which was a continuation of the main components of PINK I, with special attention for invasive species and grasshoppers. A third phase (PINK III) is running from 2014 to 2018. This dataset contains Odonata occurrences observed during PINK I and PINK II. Issues with the dataset can be reported at https://github.com/inbo/data-publication/tree/master/datasets/pink-odonata-eventsTo allow anyone to use this dataset, we have released the data to the public domain under a Creative Commons Zero waiver (http://creativecommons.org/publicdomain/zero/1.0/). We would appreciate however, if you read and follow these norms for data use (http://www.inbo.be/en/norms-for-data-use) and provide a link to the original dataset (https://doi.org/10.15468/wp82td) whenever possible. If you use these data for a scientific paper, please cite the dataset following the applicable citation norms and/or consider us for co-authorship. We are always interested to know how you have used or visualized the data, or to provide more information, so please contact us via the contact information provided in the metadata, opendata@inbo.be or https://twitter.com/LifeWatchINBO.
DOI: 10.17630/f8c2b22a-a74a-4dca-a6b5-6e0b956af2b3
title: Data underpinning Measuring the Edwards-Anderson order parameter of the Bose glass: a quantum gas microscope approach
DOI: 10.15468/dl.w7vteg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((105.977 -1.355819, 105.906717 -1.361385, 105.838164 -1.377945, 105.773027 -1.405093, 105.71291 -1.44216, 105.659293 -1.488233, 105.613494 -1.54218, 105.576643 -1.602672, 105.549646 -1.668219, 105.53317 -1.73721, 105.52762 -1.807944, 105.533135 -1.878681, 105.549581 -1.947679, 105.576553 -2.013239, 105.613389 -2.073746, 105.659182 -2.127709, 105.712805 -2.1738, 105.772937 -2.210882, 105.838099 -2.238042, 105.906683 -2.25461, 105.977 -2.260179, 106.047317 -2.25461, 106.115901 -2.238042, 106.181063 -2.210882, 106.241195 -2.1738, 106.294818 -2.127709, 106.340611 -2.073746, 106.377447 -2.013239, 106.404419 -1.947679, 106.420865 -1.878681, 106.42638 -1.807944, 106.42083 -1.73721, 106.404354 -1.668219, 106.377357 -1.602672, 106.340506 -1.54218, 106.294707 -1.488233, 106.24109 -1.44216, 106.180973 -1.405093, 106.115836 -1.377945, 106.047283 -1.361385, 105.977 -1.355819))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047152-251120083545085/datasets/export for details.
DOI: 10.15468/dl.zutj8d
title: Occurrence Download

description: A dataset containing 2409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lymantria mathura)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is not null",
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "Year is greater than or equal to 2010",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2409 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047154-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tuczvr
title: Occurrence Download

description: A dataset containing 7148 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cercibis oxycerca"
 ]
}

 The dataset includes 7148 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047155-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.12685.60648
title: MAPA: ÁREAS URBANIZADAS, ILHA DE UPAON-AÇU, MARANHÃO
DOI: 10.17630/b117fce7-9de4-4af3-a4bf-368096c014af
title: Data underpinning - A saturated red color converter for visible light communication using a blend of star-shaped organic semiconductors
DOI: 10.15468/dl.k2gy98
title: Occurrence Download

description: A dataset containing 145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cattleya pumila"
 ]
}

 The dataset includes 145 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047156-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zvhzx9
title: Occurrence Download

description: A dataset containing 1974 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "Geometry POLYGON((113.76309 22.40032,113.86705 22.38558,114.00204 22.49032,114.02687 22.50971,114.10522 22.48411,114.28676 22.51437,114.5133 22.44299,114.70027 22.41661,114.68553 22.67961,114.46132 22.8565,113.78636 22.86969,113.70103 22.72306,113.76309 22.40032))",
 "TaxonKey is Platalea minor"
 ]
}

 The dataset includes 1974 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047157-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eu8dxc
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((103.431 -1.352819, 103.360717 -1.358385, 103.292164 -1.374945, 103.227028 -1.402093, 103.166911 -1.43916, 103.113293 -1.485233, 103.067495 -1.53918, 103.030643 -1.599672, 103.003647 -1.665219, 102.98717 -1.73421, 102.981621 -1.804944, 102.987136 -1.875681, 103.003582 -1.944679, 103.030554 -2.010239, 103.067389 -2.070746, 103.113182 -2.12471, 103.166805 -2.1708, 103.226938 -2.207882, 103.292099 -2.235042, 103.360683 -2.25161, 103.431 -2.257179, 103.501317 -2.25161, 103.569901 -2.235042, 103.635062 -2.207882, 103.695195 -2.1708, 103.748818 -2.12471, 103.794611 -2.070746, 103.831446 -2.010239, 103.858418 -1.944679, 103.874864 -1.875681, 103.880379 -1.804944, 103.87483 -1.73421, 103.858353 -1.665219, 103.831357 -1.599672, 103.794505 -1.53918, 103.748707 -1.485233, 103.695089 -1.43916, 103.634972 -1.402093, 103.569836 -1.374945, 103.501283 -1.358385, 103.431 -1.352819))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047158-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h75pk6
title: Occurrence Download

description: A dataset listing the 69293 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is RB - Coleção do Herbário do Jardim Botânico do Rio de Janeiro"
 ]
}

 The dataset's 69293 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047145-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.