cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19672098
title: Functional annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19672098.v1
title: Functional annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19672086
title: Repeat annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19672086.v1
title: Repeat annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19672107
title: one-to-one_orthologs

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19672107.v1
title: one-to-one_orthologs

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.34740/kaggle/dsv/3563751
title: PFE_MASTER_009_DATA2
DOI: 10.5281/zenodo.6547713
title: HiSim Data Package for PIEG-Strom

description: <strong>HiSim Data Package for PIEG-Strom</strong> Collection with weather data as well as thermal and electrical load profiles for the HiSim Framework (https://github.com/FZJ-IEK3-VSA/HiSim) regarding the simulations for <em>VDI 4657 guideline</em> and the webtool <em>PIEG-Strom Online</em> <strong>Folders</strong> electrical-loadprofiles thermal-loadprofiles weather photovoltaic <strong>Information</strong> Every folder contains a <em>readme.md</em> with information about source and license of the files in <em>data_raw</em>. Final data files were produced with the <em>process_data.ipynb</em> notebooks and saved into <em>data_processed</em> folder.
DOI: 10.5281/zenodo.6547712
title: HiSim Data Package for PIEG-Strom

description: <strong>HiSim Data Package for PIEG-Strom</strong> Collection with weather data as well as thermal and electrical load profiles for the HiSim Framework (https://github.com/FZJ-IEK3-VSA/HiSim) regarding the simulations for <em>VDI 4657 guideline</em> and the webtool <em>PIEG-Strom Online</em> <strong>Folders</strong> electrical-loadprofiles thermal-loadprofiles weather photovoltaic <strong>Information</strong> Every folder contains a <em>readme.md</em> with information about source and license of the files in <em>data_raw</em>. Final data files were produced with the <em>process_data.ipynb</em> notebooks and saved into <em>data_processed</em> folder.
DOI: 10.6084/m9.figshare.19738207
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19738207.v2
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.6084/m9.figshare.19738207.v1
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 168 Kb. On average, 9.35% genome region was annotated as repetitive elements, and 12,047 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in these species, containing 583 to 602 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species
DOI: 10.25625/vfueim/m7jxhd
title: Chapter4_Plasma-manuscript_Suppl_table_3.tab

description: :unav
DOI: 10.25625/vfueim/ywj93i
title: Chapter3_Supplement_SN15_unbiased_HumanSkin.tab

description: :unav
DOI: 10.25625/vfueim/qix4fd
title: Chapter4_Plasma-manuscript_Suppl_table_1.docx

description: :unav
DOI: 10.25625/vfueim/fwezp6
title: Chapter4_Plasma-manuscript_Suppl_table_2.tab

description: :unav
DOI: 10.25625/vfueim/4cuxnz
title: Chapter3_Supplement_SN15_Responder_HA_TC.tab

description: :unav
DOI: 10.25625/vfueim/u4eupy
title: Chapter2_Skin-manuscript_Supplement.pdf

description: :unav
DOI: 10.25625/vfueim/grpah1
title: Chapter3_Supplement_SN15_unbiased_MouseSkin.tab

description: :unav
DOI: 10.25625/vfueim/cdm9b7
title: Chapter3_Supplement_SN15_Responder_HA_24h.tab

description: :unav
DOI: 10.25625/vfueim/vs57pr
title: Chapter3_SupplementSN15_differential_signatures.tab

description: :unav
DOI: 10.25625/vfueim/hprzka
title: Chapter3_Supplement_SN15_unbiased_HS-vs-MS.tab

description: :unav
DOI: 10.25625/vfueim
title: Supplementary Data Thesis C.Kappert

description: Supplementary Data Thesis C.Kappert
DOI: 10.6084/m9.figshare.19766827.v1
title: Supplementary File S1 - Schönberger et al. (2022). A review of morphological characters for the identification of three common species of Sarcophaga s. str. (Diptera: Sarcophagidae), with an emphasis on female terminalia). Zootaxa

description: Supplementary File S1 containing the full comprehensive dataset of the analyzed specimens <br> Schönberger et al. (2022). A review of morphological characters for the identification of three common species of <em>Sarcophaga</em> s. str. (Diptera: Sarcophagidae), with an emphasis on female terminalia. <em>Zootaxa</em> <br>
DOI: 10.6084/m9.figshare.19766827.v2
title: Supplementary File S1 - Schönberger et al. (2022). A review of morphological characters for the identification of three common species of Sarcophaga s. str. (Diptera: Sarcophagidae), with an emphasis on female terminalia). Zootaxa ssss

description: Supplementary File S1 containing the full comprehensive dataset of the analyzed specimens <br> Schönberger et al. (2022). A review of morphological characters for the identification of three common species of <em>Sarcophaga</em> s. str. (Diptera: Sarcophagidae), with an emphasis on female terminalia. <em>Zootaxa</em> <br>
DOI: 10.5281/zenodo.6548297
title: LMA data

description: LMA data is used to calculate the fractal dimension distribution, the leader development speed and the power density distribution.
DOI: 10.5281/zenodo.6548296
title: LMA data

description: LMA data is used to calculate the fractal dimension distribution, the leader development speed and the power density distribution.
DOI: 10.14469/hpc/10392
title: YC22 Programme and Abstracts

description: YC22 Programme and Speaker Abstracts
DOI: 10.14469/hpc/10483
title: Kemp + 2H2O, B3LYP+DG3BJ/Def2-TZVPPD/acetonitrile, TS G= -587.982409 G = 13.8

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10484
title: Kemp, B3LYP+DG3BJ/Def2-TZVPPD/acetone, GS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10485
title: Kemp, B3LYP+DG3BJ/Def2-TZVPPD/water, GS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10486
title: Kemp, B3LYP+DG3BJ/Def2-TZVPPD/acetone, TS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10487
title: Kemp, B3LYP+DG3BJ/Def2-TZVPPD/water, TS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10488
title: 5-nitro-Kemp, b3lyp/Def2-TZVPPD/water, TS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10489
title: 5-nitro-Kemp, b3lyp/Def2-TZVPPD/water, GS

description: Gaussian 16 (C01) calculation
DOI: 10.14469/hpc/10490
title: Kemp + 2H2O, wB97XD/Def2-TZVPPD/water, TS G

description: Gaussian 16 (C01) calculation
DOI: 10.48370/ofd/eqdujl
title: Sorex araneus - 131834, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1979-07-20, in: Białowieża Forest, Poland. Material type:
DOI: 10.6084/m9.figshare.19766872
title: honey1.docx

description: funded by airlangga univesity
DOI: 10.6084/m9.figshare.19766872.v1
title: honey1.docx

description: funded by airlangga univesity
DOI: 10.48370/ofd/r9pyek
title: Sorex araneus - 135921, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1980-04-24, in: Białowieża Forest, Poland. Material type:
DOI: 10.48370/ofd/e67y3g
title: Sorex araneus - 131543, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1979-05-24, in: Białowieża Forest, Poland. Material type:
DOI: 10.48370/ofd/hrs7ye
title: Sorex araneus - 134750, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1979-07-24, in: Białowieża Forest, Poland. Material type:
DOI: 10.48370/ofd/vhsbu8
title: Sorex araneus - 131818, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1979-07-16, in: Białowieża Forest, Poland. Material type:
DOI: 10.48370/ofd/rq0str
title: Sorex araneus - 73934, Zoological collection of the Mammal Research Institute, PAS

description: Sorex araneus (Common shrew) from Zoological collection of the Mammal Research Institute, PAS. Collected 1968-05-06, in: Białowieża Forest, Poland. Material type:
DOI: 10.5281/zenodo.4432117
title: ENGLISH-AKUAPEM TWI PARALLEL CORPUS

description: This dataset <em><strong>(verified_data.csv)</strong></em> is bilingual machine translation training corpus for English and Akuapem Twi of 25,421 sentence pairs. <br> A transformer-based machine translator was used to generate initial translations in Akuapem Twi, which were later verified and corrected where necessary by native speakers. <br> The main idea of a typical use case for the dataset is for further training of machine translation models in Akuapem Twi.<br> The data can also be used for other downstream NLP tasks such as Named Entity Recognition and POS tagging, with appropriate additional annotations. <br> Another potential application is training unsupervised embeddings for the Akuapem Twi language.<br> In addition a higher quality 697 crowdsourced sentences <em><strong>(crowdsourced_data.csv) </strong></em>are provided for use as an evaluation set for the tasks highlighted above. It is recommended as a testing dataset for machine translation English to Twi and Twi to English models. <strong>Acknowledgement</strong>: This project was supported by the AI4D language dataset fellowship through K4all and Zindi Africa
DOI: 10.5281/zenodo.4430880
title: ENGLISH-AKUAPEM TWI PARALLEL CORPUS

description: This dataset <em><strong>(verified_data.csv)</strong></em> is bilingual machine translation training corpus for English and Akuapem Twi of 25,421 sentence pairs. <br> A transformer-based machine translator was used to generate initial translations in Akuapem Twi, which were later verified and corrected where necessary by native speakers. <br> The main idea of a typical use case for the dataset is for further training of machine translation models in Akuapem Twi.<br> The data can also be used for other downstream NLP tasks such as Named Entity Recognition and POS tagging, with appropriate additional annotations. <br> Another potential application is training unsupervised embeddings for the Akuapem Twi language.<br> In addition a higher quality 697 crowdsourced sentences <em><strong>(crowdsourced_data.csv) </strong></em>are provided for use as an evaluation set for the tasks highlighted above. It is recommended as a testing dataset for machine translation English to Twi and Twi to English models. <strong>Acknowledgement</strong>: This project was supported by the AI4D language dataset fellowship through K4all and Zindi Africa
DOI: 10.6084/m9.figshare.19766848
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 169 Kb. On average, 9.82% genome region was annotated as repetitive elements, and 12,059 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in manakins, containing 585 to 751 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.
DOI: 10.6084/m9.figshare.19766848.v1
title: Protein-coding gene annotation

description: Manakins represent a family of small suboscine passerine birds characterized by their elaborate courtship displays, non-monogamous mating system, and sexual dimorphism. This family thus serves as a good model for the study of sexual selection. Here we present the genome assemblies of four manakin species (<em>Cryptopipo holochlora, Dixiphia pipra, Machaeropterus deliciosus</em> and <em>Masius chrysopterus</em>) generated by Single-tube Long Fragment Read (stLFR) technology. The assembled genome sizes ranged from 1.10 Gb to 1.19 Gb, with average scaffold N50 of 28 Mb and contig N50 of 169 Kb. On average, 9.82% genome region was annotated as repetitive elements, and 12,059 protein-coding genes were annotated in the genomes. We further identified about 75 Mb Z-linked sequences in manakins, containing 585 to 751 genes, and 600 Kb pseudoautosomal region (PAR). One interesting finding of these Z-linked sequences is that Z-to-autosome/PAR reversal could happen in <em>Masius chrysopterus</em>. These manakin genomes will contribute to a deeper understanding of evolutionary history and sexual selection in these species.