cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/7ivo3e
title: Taxonomic profiles, functional profiles and manually curated metadata of human fecal metagenomes from public projects coming from colorectal cancer studies

description: In the context of the FeMAI project (Federated Microbiome AI for human health), this dataset was created to assess various machine learning classification methods for colorectal cancer risk stratification. Cohort overview This dataset gathers 2340 human stool samples characterized by shotgun metagenomic sequencing from 15 public cohorts spanning 10 countries, aiming at studying composition of the gut microbiota in healthy controls and patients with adenoma or colorectal cancer. The BioProjects associated with the cohorts are : PRJDB4176 (JPN, 645 individuals, 286 CRC patients) PRJEB10878 (CHN, 128 individuals, 74 CRC patients) PRJEB12449 (USA, 104 individuals, 52 CRC patients) PRJEB27928 (GER, 82 individuals, 22 CRC patients) PRJEB6070 (FRA, 156 individuals, 53 CRC patients - GER, 43 individuals, 38 CRC patients) PRJEB7774 (AUT, 156 individuals, 46 CRC patients) PRJNA389927 (USA, 56 individuals, 26 CRC patients - CAN, 28 individuals, 2 CRC patients) PRJNA397112 (IND, 110 individuals, no patients) PRJNA447983 (ITA, 140 individuals, 61 CRC patients) PRJNA531273 (IND, 30 individuals, 30 CRC patients) PRJNA608088 (CHN, 18 individuals, 6 CRC patients) PRJNA429097 (CHN, 193 individuals, 98 CRC patients) PRJNA763023 (CHN, 200 individuals, 100 CRC patients) PRJNA731589 (CHN, 161 individuals, 76 CRC patients) PRJNA961076 (BRA, 90 individuals, 30 CRC patients) Data processing Sequencing data was downloaded from the European Nucleotide Archive. Reads were quality trimmed and filtered from sequencing adapters using fastp. Remaining contamination by the host genome was filtered out by mapping reads against the human reference genome (T2T-CHM13v2.0) with bowtie2. Microbial species identification and quantification was estimated according to both human gut reference gene catalogue (IGC2, 10.4M genes) and human oral gene catalogue (8.4M genes) clustered into Metagenomic Species Pangenomes taxonomically and functionally annotated. Data provided The data associated with the cohorts are : Metagenomic Species abundance/count tables among samples and associated taxonomy with METEOR, Metaphlan4 and Sylph (GTDB version RS214) Functional modules abundance among samples and associated annotation with METEOR (KEGG version 92) Strain abundance table with METEOR Metagenomic Species and functional modules abundance/count tables batch effect correction with both 0% and 10% species prevalence filter. Manually curated metadata : All but 6 gut metagenomic samples from the 14 public projects are listed (96 virome samples from PRJNA389927 and 6 samples from PRJEB12449 not described in the associated paper and with no health status were discarded). A quality check was performed and 104 samples were identified as contaminated. They are listed in the metadata file but proposed to be suppressed. Comparison table between Meteor, Metaphlan2 and Metaphlan4.
DOI: 10.57745/bcpzi8
title: Experimental and modeling study of acetone combustion focusing on laminar burning velocities

description: The pyrolysis and oxidation of acetone were studied using three complementary experimental setups. Jet-stirred reactor experiments were performed at four equivalence ratios (ϕ = 0.5, 1, 2, and ∞), at pressure of 1.067 bar (800 Torr) and over the temperature range of 700–1200 K for pyrolysis and 600–1150 K for oxidation. The decomposition of acetone starts around 800 K with a conversion rate of 50% obtained around 1000 K in both pyrolysis and oxidation studies. The main stable products detected in both conditions are small hydrocarbons (methane, ethane, and ethylene), with also acetaldehyde, CO and CO2 for oxidation. Oscillation behavior was detected beyond 1000 K under oxidation conditions and the products were followed with on-line mass spectrometry. Ignition delay times were measured using a rapid compression machine at pressures of 20 and 40 bar under non-diluted stoichiometric conditions over the temperature range 850-1100 K. The ignition delay times measured in the present study, combined with shock tube data of literature, exhibit a slight inflexion to the Arrhenius behavior, but no negative temperature coefficient. Laminar burning velocities were measured using a flat flame burner at atmospheric pressure for three fresh gas temperatures: ambient temperature, 358 and 398 K. A detailed kinetic model of the combustion of acetone including 852 species and 3265 reactions was developed. This new kinetic mechanism predicts relatively well the experimental measurements of ignition delay times, the mole fraction of the products in the jet-stirred reactor including oscillations and laminar burning velocities. Related flow rate and sensitivity analysis are also presented providing new insights into the acetone reaction network.
DOI: 10.57745/bounlh
title: IgA coated microbiota

description: IgA-coated microbial community from non-IBD, Crohn’s disease and ulcerative colitis patients analyzed by Illumina MiSeq 16S rRNA gene sequencing
DOI: 10.57745/bqhjaq
title: MassiveFold data for target H1236 - T292

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/c68zoc
title: Microtomoscan of Clay-Sulfate Rock in humid air under uncontrolled conditions after 1 day, Part 3.1

description: microtomoscan
DOI: 10.57745/btc3s4
title: Regnet et al., SEDGEO MEET

description: Porosity & Permeability Data
DOI: 10.57745/ceiu9l
title: Mapping Global Brain Reconfigurations Following Local Targeted Manipulations

description: Raw fMRI data from a model of chemogenetic silencing. These data is associated with the paper by Rabuffo G et al, "Mapping Global Brain Reconfigurations Following Local Targeted Manipulations" accepted for publication in PNAS 2025.
DOI: 10.5281/zenodo.10583524
title: Linked collectors and determiners for: Fiocruz/COLFLEB - Coleção de Flebotomíneos.

description: Natural history specimen data linked to collectors and determiners held within, "Fiocruz/COLFLEB - Coleção de Flebotomíneos". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10704059
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10704062
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872026
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872027
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872028
title: Linked collectors and determiners for: Fiocruz/COLFLEB - Coleção de Flebotomíneos.

description: Natural history specimen data linked to collectors and determiners held within, "Fiocruz/COLFLEB - Coleção de Flebotomíneos". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872029
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872030
title: Linked collectors and determiners for: NCSM Ichthyology Collection.

description: Natural history specimen data linked to collectors and determiners held within, "NCSM Ichthyology Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.10872031
title: Linked collectors and determiners for: Taxonomic review of Dendrophryniscus brevipollicatus Jiménez de la Espada, 1870, with revalidation of D. imitator (Miranda-Ribeiro, 1920) and D. lauroi Miranda-Ribeiro, 1926, and description of four new related species (Anura, Bufonidae).

description: Natural history specimen data linked to collectors and determiners held within, "Taxonomic review of Dendrophryniscus brevipollicatus Jiménez de la Espada, 1870, with revalidation of D. imitator (Miranda-Ribeiro, 1920) and D. lauroi Miranda-Ribeiro, 1926, and description of four new related species (Anura, Bufonidae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a809cd9-f17a-4eea-8eb0-ad8f2ee0ef91 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a809cd9-f17a-4eea-8eb0-ad8f2ee0ef91. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11048844
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11048848
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11223052
title: Linked collectors and determiners for: Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917.

description: Natural history specimen data linked to collectors and determiners held within, "Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11223056
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610151
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610158
title: Linked collectors and determiners for: NCSM Ichthyology Collection.

description: Natural history specimen data linked to collectors and determiners held within, "NCSM Ichthyology Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610159
title: Linked collectors and determiners for: Taxonomic review of Dendrophryniscus brevipollicatus Jiménez de la Espada, 1870, with revalidation of D. imitator (Miranda-Ribeiro, 1920) and D. lauroi Miranda-Ribeiro, 1926, and description of four new related species (Anura, Bufonidae).

description: Natural history specimen data linked to collectors and determiners held within, "Taxonomic review of Dendrophryniscus brevipollicatus Jiménez de la Espada, 1870, with revalidation of D. imitator (Miranda-Ribeiro, 1920) and D. lauroi Miranda-Ribeiro, 1926, and description of four new related species (Anura, Bufonidae)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a809cd9-f17a-4eea-8eb0-ad8f2ee0ef91 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a809cd9-f17a-4eea-8eb0-ad8f2ee0ef91. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13122354
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13971780
title: Linked collectors and determiners for: New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand.

description: Natural history specimen data linked to collectors and determiners held within, "New species and phylogeny of landhoppers in the genus Waematau Duncan, 1994 (Crustacea: Amphipoda: Talitridae) from northern New Zealand". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a157755-470d-47e1-bc4e-43727dd77748 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a157755-470d-47e1-bc4e-43727dd77748. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13971781
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13971784
title: Linked collectors and determiners for: NCSM Ichthyology Collection.

description: Natural history specimen data linked to collectors and determiners held within, "NCSM Ichthyology Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11223054
title: Linked collectors and determiners for: SA Flora (BDBSA).

description: Natural history specimen data linked to collectors and determiners held within, "SA Flora (BDBSA)". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a513d16-f4ce-4252-974f-2486ce70b788 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a513d16-f4ce-4252-974f-2486ce70b788. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.11223055
title: Linked collectors and determiners for: Fiocruz/COLFLEB - Coleção de Flebotomíneos.

description: Natural history specimen data linked to collectors and determiners held within, "Fiocruz/COLFLEB - Coleção de Flebotomíneos". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a629a9a-38d1-496b-afbf-b4ff3b8fae60. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610146
title: Linked collectors and determiners for: Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917.

description: Natural history specimen data linked to collectors and determiners held within, "Type material of land snails (Mollusca: Gastropoda) described from New Zealand by taxonomists in Europe and North America between 1830 and 1934, and the history of research on the New Zealand land snail fauna from 1824 to 1917". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a01bfb5-6e33-42b5-ab5d-4f8512c9128f. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.12610155
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13385371
title: Linked collectors and determiners for: Waite Insect and Nematode Collection.

description: Natural history specimen data linked to collectors and determiners held within, "Waite Insect and Nematode Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a796d4b-d12f-4806-876a-4fbb5e0a63ca. Formatted as a Frictionless Data package.
DOI: 10.5281/zenodo.13385372
title: Linked collectors and determiners for: NCSM Ichthyology Collection.

description: Natural history specimen data linked to collectors and determiners held within, "NCSM Ichthyology Collection". Claims or attributions were made on Bionomia by volunteer Scribes, https://bionomia.net/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73 using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, https://gbif.org/dataset/2a79f202-3f3a-4d54-88fa-09aa8de1ac73. Formatted as a Frictionless Data package.