cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25338/b8t066
title: Synthetic population – Democratization of electric vehicle charging infrastructure

description: The path to transportation decarbonization will rely heavily on electric
 vehicles (EVs) in the United States. EV diffusion forecasting tools are
 necessary to predict the impacts of EVs on local energy demand and
 environmental quality. Few EV adoption models operate at a fine spatial
 scale and those that do still rely on aggregated demographic information.
 This adoption model is one of the first attempts to employ a synthetic
 population to examine EV distribution at a fine spatial and demographic
 scale. Using a synthetic population at the Census-Tract-level, enriched
 with household fleet body types and home-charging access, we consider the
 effect of vehicle body type on EV spatial distribution and home-charging
 access in California. We examine two EV body type mixes in a high
 electrification scenario where 8 million EVs are distributed across 6
 million households in California: a “Small Vehicles” scenario where 6
 million EVs are passenger cars and 2 million EVs are trucks, sport utility
 vehicles (SUVs), or vans and a “Large Vehicles” scenario with 4 million of
 each category. We find that an electrification scenario with more electric
 trucks and SUVs serves to distribute electrified households more evenly
 throughout the state, shifting them from urban to rural counties, while
 there is little impact on home-charging access.
DOI: 10.5061/dryad.cvdncjt75
title: Divorce rate in birds increases with male promiscuity and migration distance

description: Socially monogamous birds may break up their partnership by a so-called
 ’divorce’ behaviour. Divorce rate immensely varies across avian taxa that
 have a predominantly monogamous social mating system. Although a range of
 factors associated with divorce have been tested, broad-scale drivers of
 divorce rate remain contentious. Moreover, the impact of sexual roles in
 divorce still needs further investigation due to the conflicting interest
 of males and females. Here we applied phylogenetic comparative methods to
 analyse one of the largest datasets ever compiled that included divorce
 rates from published studies of 186 avian species from 25 orders and 61
 families. We tested correlations between divorce rate and a group of
 factors: ‘promiscuity’ of both sexes (propensity of polygamy), migration
 distance, and adult mortality. Our results showed that only male
 promiscuity, but not female promiscuity, had a positive relationship with
 divorce rate. Furthermore, migration distance was positively correlated
 with divorce rate, while adult mortality rate showed no direct
 relationship with divorce rate. These findings indicated that divorce
 might not be a simple adaptive (by sexual selection) or non-adaptive
 strategy (by accidental loss of a partner), but could be a mixed response
 to sexual conflict and stress from the ambient environment.
description: We used data from
 Kenny et al. (2017), Liker et al. (2014),
 Botero et al. (2012), <em>Handbook of the Birds of the
 World </em>(https://birdsoftheworld.org) and other published literature (cited in the table). For migration distance, we used data from Delhey et al. 2021. Adult mortality rate was extracted from the AVONET database. Our final dataset contains 232 avian species from 25 orders and 61 families, and the number of species with the full dataset is 186.  Botero, C.A., Dustin, R. , & Rubenstein. (2012). Fluctuating environments, sexual selection and the evolution of flexible mate choice in birds. PLoS ONE, 7(2), e32311. 10.1371/journal.pone.0032311 Delhey, K. , Dale, J. , Valcu, M. , & Kempenaers, B. . (2021). Migratory birds are lighter coloured. Current Biology, 31(23), R1511-R1512. 10.1016/j.cub.2021.10.048 Kenny, K. , Birkhead, T. R. , & Green, J. P. (2017). Allopreening in birds is associated with parental cooperation over offspring care and stable pair bonds across years. Behavioral Ecology, 28(4), 1142-1148. 10.1093/beheco/arx078 Liker, A. , Freckleton, R. P. , & Székely, T. (2014). Divorce and infidelity are associated with skewed adult sex ratios in birds. Current Biology, 24, 880–884. 10.1016/j.cub.2014.02.059 Tobias, J.A., Sheard, C., Pigot, A.L., Devenish, A.J.M., Yang, J., Sayol, F., et al. (2022) AVONET: morphological, ecological and geographical data for all birds. Ecology Letters, 25, 581– 597. 10.1111/ele.13898
DOI: 10.5517/ccdc.csd.cc2pbnk8
title: CCDC 2482900: Experimental Crystal Structure Determination

description: Related Article: Yu-Long Zhang, Zhu Zhuo, Zi-Ang Nan, Jiang-Feng Lu, Wei Wang, Ming-Yan Wu, You-Gui Huang|2026|J. Am. Ceram. Soc.|||doi:10.1021/jacs.5c16974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2pbz89
title: CCDC 2483201: Experimental Crystal Structure Determination

description: Related Article: Yu-Long Zhang, Zhu Zhuo, Zi-Ang Nan, Jiang-Feng Lu, Wei Wang, Ming-Yan Wu, You-Gui Huang|2026|J. Am. Ceram. Soc.|||doi:10.1021/jacs.5c16974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5066/p97tmy3d
title: Kootenai River white sturgeon fine-scale habitat model archive

description: Kootenai river hydraulic conditions were simulated using the iRIC FaSTMECH two-dimensional hydraulic flow model (Nelson, 2003). In addition to this study, FaSTMECH 2D flow models have been developed for numerous Kootenai River studies dating back to 2005. The methods used to develop, calibrate, and simulate FaSTMECH 2D flow models are described at length in multiple previous studies (Fosness and Dudunake, in press; Barton and others, 2005; Barton and others, 2007; Logan and others, 2011; McDonald and others, 2016; McDonald and Nelson, 2018; McDonald and Nelson, 2020). Model simulations were combined with white sturgeon telemetry data to explain fish positions with respect to selected depths and depth-averaged velocity.
DOI: 10.5517/ccdc.csd.cc2pbz78
title: CCDC 2483200: Experimental Crystal Structure Determination

description: Related Article: Yu-Long Zhang, Zhu Zhuo, Zi-Ang Nan, Jiang-Feng Lu, Wei Wang, Ming-Yan Wu, You-Gui Huang|2026|J. Am. Ceram. Soc.|||doi:10.1021/jacs.5c16974
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.tdz08kq32
title: Deep learning from phylogenies for diversification analyses

description: Birth-death models are widely used in combination with species phylogenies
 to study past diversification dynamics. Current inference approaches
 typically rely on likelihood-based methods. These methods are not
 generalizable, as a new likelihood formula must be established each time a
 new model is proposed; for some models, such a formula is not even
 tractable. Deep learning can bring solutions in such situations, as deep
 neural networks can be trained to learn the relation between simulations
 and parameter values as a regression problem. In this paper, we adapt a
 recently developed deep learning method from pathogen phylodynamics to the
 case of diversification inference, and we extend its applicability to the
 case of the inference of state-dependent diversification models from
 phylogenies associated with trait data. We demonstrate the accuracy and
 time efficiency of the approach for the time-constant homogeneous
 birth-death model and the Binary-State Speciation and Extinction model.
 Finally, we illustrate the use of the proposed inference machinery by
 reanalyzing a phylogeny of primates and their associated ecological role
 as seed dispersers. Deep learning inference provides at least the same
 accuracy as likelihood-based inference while being faster by several
 orders of magnitude, offering a promising new inference approach for
 deployment of future models in the field.
description: The empirical data was collected from https://doi.org/10.5061/dryad.8492 for the primate phylogeny and from https://doi.org/10.5061/dryad.kh21qb76 for the associated traits data.
DOI: 10.5061/dryad.z8w9ghxg8
title: Dung counts large mammals Volcanoes NP, Rwanda, 2008 and 2021

description: It is unclear whether the remarkable recovery of mountain gorillas
 (Gorilla beringei) in the Virunga Mountains, East Africa, that followed
 decades of intensive conservation efforts is indicative of positive trends
 in abundance and distribution of other large mammals (meso and
 megaherbivores). Positive population trends are particularly relevant for
 globally threatened elephants Loxodonta sp., as conservation and research
 efforts have predominantly focused on populations that range in lowland
 savanna ecosystems rather than the smaller but ecologically and
 genetically unique populations found in Virungas’ montane ecosystems. We
 used marked pellet group counts in dung clearance plots to determine the
 density/abundance and distribution of three meso (buffalo, black-fronted
 duiker, bushbuck) and one mega (elephant) herbivores in Volcanoes National
 Park (VNP; covering part of the Virunga Mountains), Rwanda, in
 July–September 2008 and 2021. We estimated that elephants and duiker
 populations saw a minor increase between 2008 and 2021 while densities of
 buffalo and bushbuck increased substantially over the course of the past
 decade. Accompanying, we found no evidence of substantial distributional
 shifts for elephants but observed increases in densities of the other
 species in the southwestern parts of VNP. Overall, density estimates for
 all species were much higher in both 2008 and 2021 than in a previous
 survey in 2004, which suggests that meso and megaherbivores have largely
 recovered from a steep decline in numbers towards the end of the 20th
 century, possibly benefitting from the same protection efforts that
 benefitted mountain gorillas.
description: In 2008 and 2021, we conducted large mammal dung counts during
 multiple sampling rounds at square plots (size pending species) located
 along transects parallel to elevational gradients across Volcanoes
 National Park, Rwanda.
DOI: 10.15468/dl.xbv6cd
title: Occurrence Download

description: A dataset containing 246 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Euchilopsis linearis",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 246 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003301-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.np5hqbzxf
title: Cytb gene sequences of Fejervarya species from Lesser Sunda, Indonesia and other Asian countries

description: Cyt b gene sequences of Fejervarya species were done and later submitted
 to DDBJ. Then, we received accession number which are used in our
 manuscript "Postmating isolation and evolutionary relationships among
 Fejervarya species from Lesser Sunda, Indonesia and other Asian countries
 revealed by crossing experiments and mtDNA Cytb sequences analyses".
 These are genuine data. There is no conflict of interest of these data.
description: A total of 27 frogs belonging to the genus Fejervarya were used
 for genetic research. Genomic DNA for PCR was extracted from clipped toes
 using the DNAeasy Tissue Kit (Qiagen, Valencia, CA, USA) following the
 manufacturer’s instructions. The extracted DNA solutions were used to
 amplify a partial region of the Cytb gene corresponding to nucleotide
 positions 14396–15063 in the Hoplobatrachus tigerinus complete mtDNA
 sequence (accession no. AP011543, Alam et al. 2010). PCR amplification and
 sequencing were performed using the primers Fow-1-1 and Rev-1 (Hasan et
 al. 2012) to obtain a fragment of ca. 667 bp. The resultant nucleotide
 sequences were aligned using the ClustalW program (Thompson et al. 1994).
 A phylogeny was constructed using the maximum likelihood (ML) method
 implemented in Treefinder (Jobb 2008) and branch support was evaluated by
 a bootstrap analysis with 100 replicates. The resultant sequence data were
 deposited in the DDBJ database under accession nos. LC706527–LC706542.
 Additional Cytb data were obtained from GenBank for tree
 construction.
DOI: 10.5061/dryad.tqjq2bw33
title: Data from: Three new Gesneria species (Gesneriaceae) support Parc National Pic Macaya (Haiti) as an important biodiversity hotspot

description: The Caribbean Islands are a biodiversity hotspot characterized by a high
 taxonomic diversity and endemicity, suggesting that many species have yet
 to be discovered. Unfortunately, many of these undescribed species may go
 extinct before they are described because of the drastic habitat loss in
 these oceanic islands. In this study, we describe three new plant species
 of Gesneria (Gesneriaceae) that are endemic to the Massif de la Hotte in
 southwest Haiti, a region recently affected by extensive deforestation.
 Elliptical Fourier analyses of leaf shapes and DNA sequencing of five
 nuclear genes were used to support the species delimitations. Gesneria
 flava is a tall shrub with large yellow flowers, leafy sepals, and rugose
 leaves. Gesneria × cornuta is a hybrid between Gesneria bicolor and the
 newly described Gesneria flava and is morphologically intermediate between
 its parents. Its hybrid origin is further supported by the presence of
 alleles from both parents for all five nuclear genes sequenced. Finally,
 Gesneria radiata is a saxicolous herb with radially symmetrical corollas.
 The three new species described here are limited to a single mountain
 range in the Caribbean, the Massif de la Hotte. These recent discoveries
 reflect the high endemicity of this region and exemplify the urgency to
 conserve the remaining primary forest of Haiti in order to protect its
 biodiversity.
description: The detailed methods are described in the associated paper. This
 dataset contains the data (images) and R scripts to perform the
 morphometric elliptical Fourier analyses. It also contains GenBank
 accession numbers for the sequences generated and used in the study and
 DNA alignments and gene trees resulting from the analysis of these
 sequences.
description: All files can be read with any text editor, except for the images
 that are saved in jpeg and that can be opened with almost any image
 software.
DOI: 10.5061/dryad.3xsj3txkj
title: Data from: Are brood sex ratios adaptive? The effect of experimentally altered brood sex ratio on nestling growth, mortality, and recruitment

description: Brood sex ratios (BSRs) have often been found to be non-random in respect
 of parental and environmental quality, and many hypotheses suggest that
 non-random sex ratios can be adaptive. To specifically test the adaptive
 value of biased BSRs, it is crucial to disentangle the consequences of BSR
 and maternal effects. In multiparous species, this requires
 cross-fostering experiments where foster parents rear offspring
 originating from multiple broods, and where the interactive effect of
 original and manipulated BSR on fitness components are tested. To our
 knowledge, our study on collared flycatchers (Ficedula albicollis) is the
 first that meets these requirements. In this species, where BSRs had
 previously been shown to be related to parental characteristics, we
 altered the original BSR of the parents shortly after hatching by
 cross-fostering nestlings among trios of broods, and examined the effects
 on growth, mortality, and recruitment of the nestlings. We found that
 original and experimental BSR, as well as the interaction of the two were
 unrelated to the fitness components considered. Nestling growth was
 related only to background variables, namely brood size and hatching rank.
 Nestling mortality was related only to hatching asynchrony. Our results
 therefore do not support that the observed BSRs are adaptive in our study
 population. However, we cannot exclude the possibility of direct effects
 of experimentally altered BSRs on parental fitness, which should be
 evaluated in the future. In addition, studies similar to ours are required
 on various species to get a clearer picture of the adaptive value of
 non-random BSRs.
description: Data were collected in a
 nest-box breeding population of the collared flycatcher
 (<em>Ficedula albicollis</em>) in the Pilis-Visegrádi
 Mountains, Hungary (47°43′ N, 19°01′ E) in
 2017-2021.
DOI: 10.15468/dl.zpnxes
title: Occurrence Download

description: A dataset containing 14880 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Theromyzon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 14880 records from 141 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003302-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/ccdc.csd.cc2pl75q
title: CCDC 2490173: Experimental Crystal Structure Determination

description: Related Article: Nilanjana Sen, Manfred Drusgala, Roland C. Fischer, Dmytro Neshchadin, Thomas Lainer, Michael Haas|2026|Inorg.Chem.|||doi:10.1021/acs.inorgchem.5c04482
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.rfj6q57f4
title: Combining time-resolved transcriptomics and proteomics data for Adverse Outcome Pathway refinement in ecotoxicology

description: Conventional Environmental Risk Assessment (ERA) of pesticide pollution is
 based on soil concentrations and apical endpoints, such as the
 reproduction of test organisms, but disregards information along the
 organismal response cascade leading to an adverse outcome. The Adverse
 Outcome Pathway (AOP) framework, on the other hand, facilitates the use of
 response information at any level of biological organization.
 Transcriptomic and proteomic data can provide thousands of data points on
 the response to toxic exposure. Combining multiple omics data types is
 necessary for a comprehensive overview of the response cascade and,
 therefore, AOP development. However, it is unclear if transcript and
 protein responses are synchronized in time or time-lagged. To understand
 if analysis of multi-omics data obtained at the same timepoint reveals one
 synchronized response cascade, we studied time-resolved shifts in gene
 transcript and protein abundance in the springtail Folsomia candida, a
 soil ecotoxicological model, after exposure to the neonicotinoid
 insecticide imidacloprid. We analyzed transcriptome and proteome data
 every 12 hours up to 72 hours after onset of exposure. The most pronounced
 shift in both transcript and protein abundances was observed after 48
 hours of exposure. Moreover, cross-correlation analyses indicate that most
 genes displayed the highest correlation between transcript and protein
 abundances without a time-lag. This demonstrates that a combined analysis
 of transcriptomic and proteomic data can be used for AOP improvement. This
 data will promote the development of biomarkers for neonicotinoid
 insecticide pollution in soils or chemicals with a similar mechanism of
 action.
description: Please refer to a complete description of the methods to our
 peer-reviewed article.  This upload is only for the
 proteomics data. For test soil, natural LUFA2.2. was
 used with or without imidacloprid. RNA and protein were sent to other
 facilities for further processing. Pools of
 70 <em>Folsomia</em> <em>candida</em> were exposed
 to test soil and harvested every 12 hours for a total of 72 hours. The
 protein and RNA fractions from these animals were isolated using a
 TriZol-based method.  Proteomic data: 
 Shotgun LC-MS2 (Thermo-Fisher Orbitrap), searchGUI with msgf+*,
 PeptideShaker*, label-free quantification moFF*, further analysis with
 R-Msnbase, R-limma, R-MSqRob. * these steps have been
 performed on the EU Galaxy server.  
 Transcriptomics data have been uploaded to the NCBI GEO database
 (GSE220513) and Zenodo.
description: All analysis is based on R and python. In particular, R is used
 for all downstream analyses. A Zenodo upload has been made of the
 code.
DOI: 10.5517/ccdc.csd.cc2plp33
title: CCDC 2490605: Experimental Crystal Structure Determination

description: Related Article: Ming Liu, Yi Wang, Xin Huang, Jinhui Yang, Jing-xin Ma|2026|Sep.Purif.Technol.|390||doi:10.1016/j.seppur.2026.137025
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.0p2ngf24q
title: Neuronal activation in the geomagnetic responsive region Cluster N covaries with nocturnal migratory restlessness in white-throated sparrows

description: Cluster N is a region of the visual forebrain of nocturnally migrating
 songbirds that supports the geomagnetic compass of nocturnal migrants.
 Cluster N expresses immediate-early genes (ZENK), indicating neuronal
 activation. This neuronal activity has only been recorded at night during
 the migratory season. Night-to-night variation in Cluster N activity in
 relation to migratory behaviour has not been previously examined. We
 tested whether Cluster N is activated only when birds are motivated to
 migrate and presumably engage their magnetic compass. We measured
 immediate-early gene activation in Cluster N of white-throated sparrows
 (Zonotrichia albicollis) in three conditions: daytime, nighttime migratory
 restless, and nighttime resting. Birds in the nighttime migratory
 restlessness group had significantly greater numbers of ZENK-labelled
 cells in Cluster N compared to both the daytime and the nighttime resting
 groups. Additionally, the degree of migratory restlessness was positively
 correlated with the number of ZENK-labelled cells in the nighttime
 migratory restless group. Our study adds to the number of species observed
 to have neural activation in Cluster N and demonstrates for the first time
 that immediate early gene activation in Cluster N is correlated with the
 amount of active migratory behaviour displayed across sampled individuals.
 We conclude that Cluster N is facultatively regulated by the motivation to
 migrate, together with nocturnal activity, rather than obligatorily active
 during the migration season.
description: Excel was used for data organization, calculating means, and
 calculating z-scores. All data files were converted to .csv format. Prism
 was used for analysis (t-tests, ANOVA, correlation) and data
 visualization. Prism files can be viewed in prism viewer, which is free
 software. https://www.graphpad.com/support/faqid/788/