cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26037/yareta:4f2kuon35jc27opnijubgqkmge
title: In vitro screening of UGT2B10 in silico prioritized putative ligands from drugs used in the pediatric hematopoietic stem cell transplantation setting

description: Screening in vitro of acetaminophen, lorazepam, mycophenolic acid and voriconazole N-oxide to assess the potential of being substrates and/or inhibitors of UGT2B10
DOI: 10.26037/yareta:a7g7w5wxfngghawmfjjgc4apmi
title: Oxidation-sensitive cysteines drive IL-38 amyloid formation (revisions)

description: New data from revisions
DOI: 10.26037/yareta:aij2zcfapjgzvprxjboqsiyzii
title: Business Letter

description: Description of Greek Documentary Papyri: Business Letter

https://grammateus.unige.ch/descriptions/letter_business

https://web.archive.org/web/20240918113415/https://grammateus.unige.ch/descriptions/letter_business

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:pjklwl24pzeeba2qrj2kb67b7y
DOI: 10.26037/yareta:fn4fkm5cfzgibb4mq33bfvfg44
title: TaCCare study

description: Fertility and miscarriage incidence after cervical intraepithelial neoplasia treatment by thermal ablation: a cohort study (TaCCare) – 
Supplementary material
DOI: 10.26037/yareta:g6v6qbwvsbdvxo52ivhqhl7arm
title: Cellosaurus release 50

description: Release 50 of Cellosaurus
DOI: 10.26037/yareta:gcr2sjjs5zcnzosxzuticrtuyy
title:  Compound K14 inhibits bacterial killing and protease activity in Dictyostelium discoideum phagosomes

description: Phagocytic cells of the mammalian innate immune system play a critical role in protecting the body from bacterial infections. The multiple facets of this encounter (chemotaxis, phagocytosis, destruction, evasion and pathogenicity) are largely recapitulated in the phagocytic amoeba Dictyostelium discoideum. Here we identified a new chemical compound (K14) which inhibited intracellular destruction of ingested K. pneumoniae in D. discoideum cells. Concomitantly, K14 reduced proteolytic activity in D. discoideum phagosomes. In kil1 KO cells, K14 lost its ability to inhibit phagosomal proteolysis and to inhibit intra-phagosomal bacterial destruction, suggesting that K14 inhibits a Kil1-dependent protease involved in bacterial destruction. These observations stress the key role that proteases play in bacterial destruction. They also reveal an unsuspected link between Kil1 and phagosomal proteases. K14 can be used in the future as a tool to probe the role of different proteases in phagosomal physiology and in the destruction of ingested bacteria.
DOI: 10.26037/yareta:gihrzqykp5cutadp6zsh4tteku
title: GSDMD is associated with survival in human breast cancer but does not impact anti-tumor immunity in a mouse breast cancer model

description: Inflammation plays a pivotal role in cancer development, with chronic inflammation promoting tumor progression and treatment resistance, whereas acute inflammatory responses contribute to protective anti-tumor immunity. Gasdermin D (GSDMD) mediates the release of pro-inflammatory cytokines such as IL-1β. While the release of IL-1β is directly linked to the progression of several types of cancers, the role of GSDMD in cancer is less clear. In this study, we show that GSDMD expression is upregulated in human breast, kidney, liver, and prostate cancer. Higher GSDMD expression correlated with increased survival in primary breast invasive carcinoma (BRCA), but not in liver hepatocellular carcinoma (LIHC). In BRCA, but not in LIHC, high GSDMD expression correlated with a myeloid cell signature associated with improved prognosis. To further investigate the role of GSDMD in anticancer immunity, we induced breast cancer and hepatoma tumors in GSDMD-deficient mice. Contrary to our expectations, GSDMD deficiency had no effect on tumor growth, immune cell infiltration, or cytokine expression in the tumor microenvironment, except for Cxcl10 upregulation in hepatoma tumors. In vitro and in vivo innate immune activation with TLR ligands, that prime inflammatory responses, revealed no significant difference between GSDMD-deficient and wild-type mice. These results suggest that the impact of GSDMD on anticancer immunity is dependent on the tumor type. They underscore the complex role of inflammatory pathways in cancer, emphasizing the need for further exploration into the multifaceted effects of GSDMD in various tumor microenvironments. As several pharmacological modulators of GSDMD are available, this may lead to novel strategies for combination therapy in cancer.
DOI: 10.26037/yareta:gl46ca47tjgkridbttk2mnejke
title: Brain dynamics of speech modes encoding: Loud and Whispered speech versus Standard speech

description: Loud experiment: analysis of 24 participants
Whispered experiment: analysis of 24 participants
Behavioral analyses including r codes
EEG analyses including raw, preprocessed and analyzed data
DOI: 10.26037/yareta:j77s7rlopjarhp6s5jxnc6uoym
title: Role of the coupling of the electronic transitions on the order of the metal-to-insulator phase transition in nickelates

description: Rare-earth nickelates (chemical formula RNiO3, R being a rare-earth cation) display a temperature-dependent metal-to-insulator transition (MIT) together with a breathing distortion of the NiO6 octahedra units, at a temperature ranging from 0 to 600 K depending on the size of the R cation. Their rich phase diagram is also characterized by a paramagnetic to antiferromagnetic transition that occurs at the same temperature as the MIT for R = Pr, Nd, while it arises at lower temperatures for all the other members of the series. In this work we have investigated the order of the MIT in a portion of the phase diagram spanning from SmNiO3 to NdNiO3 by means of temperature dependent transport measurements and resonant elastic x-ray scattering performed on high quality epitaxial SmxNd1−xNiO3 solid solution thin films. Our results show that the order of the metal-to-insulator transition does
not depend on whether or not the MIT is coupled with the magnetic transition.
DOI: 10.26037/yareta:maonucji75fzdjfexv4bgr25z4
title: Official Letter

description: Description of Greek Documentary Papyri: Official Letter

https://grammateus.unige.ch/descriptions/letter_official

https://web.archive.org/web/20240910142811/https://grammateus.unige.ch/descriptions/letter_official

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:j6bmf3pm7rciphcuai3ugfptfi
DOI: 10.26037/yareta:ndrkd3ubp5eydi32hbhizxmhv4
title: Franco_2024_Impact of immersive virtual reality compared to a digital static approach in word (re)learning in post-stroke aphasia and neurotypical adults: lexical-semantic effects?

description: Materials, raw data (32 young adults + 16 people with aphasia) of Impact of immersive virtual reality compared to a digital static approach in word (re)learning in post-stroke aphasia and neurotypical adults: lexical-semantic effects?
DOI: 10.26037/yareta:nl3snh47anf2rnfvd3o4dir5ju
title: Development of Genetically Encoded Fluorescent KSR1-Based Probes to Track Ceramides during Phagocytosis

description: Primary data linked to the publication "Development of Genetically Encoded Fluorescent KSR1-Based Probes to Track Ceramides during Phagocytosis" in the International Journal of Molecular Science, Girik et al 2024, 25, 2996.
DOI: 10.26037/yareta:nq6phdtx45cz5goqqxfr5qjaei
title: Snow Cover - Monthly [1984-2021] - Switzerland

description: This dataset is a time-series of monthly snow cover maps over Switzerland computed from Landsat & Sentinel-2 Analysis Ready Data (ARD) for December 1984 to December 2021

These maps quantify the presence/absence of snow using the Snow Observation from Space algorithm developed by Poussin et al. in: https://doi.org/10.1016/j.srs.2023.100078 and in a submitted paper (Snow Observation from Space: An approach to map snow cover from four decades of Landsat and Sentinel-2 imageries across Switzerland).

Snow cover is an Essential Climate Variables (ECV) playing a significant role in the climate system due to its high albedo and heat insulation. Snow cover also contributes to soil moisture and runoff, making it a crucial variable for monitoring climate change. 


Values ranges from 0 to 2. The monthly snow cover products have values ranging from 0 to 2 with the following classification for each pixel:
•	0 when the pixel is snow-free (i.e., land), 
•	1 when the pixel is covered with snow, 
•	2 when the pixel is covered with clouds (including cloud shadow),
•	NA when the pixel is classified as water or lies outside of Switzerland. 

Data format: GeoTiff
DOI: 10.26037/yareta:odzu65zj3bg5fcmfe7wyqwi2xy
title: NIHSS Retention Study Data

description: Data linked to the article: "Asynchronous Distance Learning Performance and Knowledge Retention of the NIH Stroke Scale among Health Care Professionals using Video or E-learning: A Web-based Randomized Controlled Trial"
DOI: 10.26037/yareta:oro3nohevfcglcmhyd3hoiefkm
title: Different antibacterial effectors in Dictyostelium discoideum extracts lyse different bacterial species

description: Different antibacterial effectors in Dictyostelium discoideum extracts lyse different bacterial species. MS biochem
DOI: 10.26037/yareta:rvczy4zq45b5jiqwgac4pp2hlq
title: Letter of Condolence

description: Description of Greek Documentary Papyri: Letter of Condolence

https://grammateus.unige.ch/descriptions/letter_condolence

https://web.archive.org/web/20240909094751/https://grammateus.unige.ch/descr/letter_condolence

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:qgx7o7andraaff4bctcpr7elo4
DOI: 10.26037/yareta:zctxg554jzgbvmgxcaeeejizba
title: Oxidation-sensitive cysteines drive IL-38 amyloid formation

description: IL-38 regulation during oxidative stress
DOI: 10.26037/yareta:zkaxzwqtlfbzdljkubhcyzwiai
title: DATA_Frei_et_al

description: This contains the numerical data for the publication Frei et al. PLOS Genetics 2024

The zip file contains the excel spreadsheets and statistics used in generating the charts in Frei et al. PLoS Genetics 2024.

Each file within the folder (named according to the figure it generated) contains the quantification of the fluorescence of cells transfected with the construct indicated on the top line.  The second sheet and subsequent sheets contain the results of statistical tests run on the data using the Prism Statistical Analysis software package.

Please refer to the materials and methods of the publication for details about how the data was generated.
DOI: 10.26037/yareta:zy5kamqiurhkjmrtm2n2enbn7i
title: Letter of Recommendation

description: Description of Greek Documentary Papyri: Letter of Recommendation

https://grammateus.unige.ch/descriptions/letter_recommendation

https://web.archive.org/web/20240910085553/https://grammateus.unige.ch/descriptions/letter_recommendation

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:gudbsboujnasxfsve2r6gglwpa
DOI: 10.26037/yareta:3ovcrymj4nar5nb4j6p5unmj6e
title: Order to Pay

description: Description of Greek Documentary Papyri: Order to Pay

https://grammateus.unige.ch/descriptions/letter_order

https://web.archive.org/web/20241001134249/https://grammateus.unige.ch/descriptions/letter_order

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:t526ntyrkveclnzdhqvft64h7y
DOI: 10.26037/yareta:73mpu262dfdhrojapazduh7lou
title: private data "jellium" project

description: Fortran codes and output data
DOI: 10.26037/yareta:boyfccuc6ba3dbynopek3vwtsm
title: Diurnal cortisol profiles in autistic adolescents and young adults: Associations with social difficulties and internalizing mental health symptoms

description: Final data set
DOI: 10.26037/yareta:btrvdygarvahzcyvhq6h7e56me
title: Full-length and N-terminally truncated recombinant interleukin-38 variants are similarly inefficient in antagonizing interleukin-36 and interleukin-1 receptors - revised version

description: This submission contains the primary datasets for all Figures and Supplementary Figures of the revised version of the manuscript.
DOI: 10.26037/yareta:ct7lxua6c5f33gssfma22ma6pa
title: Route to Measure Exact Parameters of Bio-Nanostructures Self-Assembly

description: Artificial bio-nanocoatings, primarily composed of proteins, offer a broad range of applications across various fields thanks to their unique properties. Proteins, as major components of these structures, enable a high degree of customization, such as mutations, conjugation with other molecules or nanoparticles, or the inclusion of an enzymatic activity. Their ability to self-assembly simplifies the production of bio-nanocoatings, making this process efficient and environment-friendly. Despite these advantages, a comprehensive understanding of the underlying self-assembly mechanism is lacking, and the reaction rates governing this process have not been characterized. In this article, we introduce a novel method to determine the key parameters describing the self-assembly mechanism of bio-nanostructures. For the first time, this approach enables an accurate calculation of the autocatalytic and self-inhibitory parameters controlling the process. Through mathematical modeling, our method enhances the understanding of how the protein-based nanocoatings form and opens new avenues for their application in nanotechnology and synthetic biology. Improved control over the self-assembly processes may enable the development of nanomaterials optimized for specific functions, such as drug delivery, biosensing, and bioactive surface fabrication.
DOI: 10.26037/yareta:df6el46sjncnhjqfot3ecxhlpm
title: Segmentation algorithms for contrast-enhanced ultrasonic images of liver lesions

description: Report describing the development of a tumor segmentation tool for contrast-enhanced ultrasound images (CEUS). The algorithms I developed were based on a region-growing approach, similar to Photoshop's ''magic wand'' tool and a "magnetic lasso".
DOI: 10.26037/yareta:dpan5fopmrbwbkljh56f2sev74
title: Asymmetric Flow Field-Flow Fractionation for Comprehensive Characterization of Hetero-aggregates made of nano-Silver and Extracellular Polymeric Substances 

description: Data set for Journal of Chromatography A research paper
"Asymmetric Flow Field-Flow Fractionation for Comprehensive Characterization of Hetero-aggregates made of nano-Silver and Extracellular Polymeric Substances"
DOI: 10.26037/yareta:ftcobqbmk5bh5glrdpukq3xmuu
title: Moiré magnetism in CrBr3 multilayers emerging from differential strain

description: Data set for: (2024)
https://doi.org/
DOI: 10.26037/yareta:ga7javtohrhr5ckh56ro6l5tze
title: Coupling of magnetic phases at nickelate interfaces

description: In this paper we present a model system built out of artificially layered materials, allowing us to understand the interrelation of magnetic phases with the metallic-insulating phase at long length scales, and enabling new strategies for the design and control of materials in devices. The artificial model system consists of superlattices made of SmNiO3 and NdNiO3 layers, – two members of the fascinating rare earth nickelate family, having different metal-to-insulator and magnetic transition temperatures. By combining two complementary techniques—resonant elastic x-ray scattering and muon spin relaxation—we show how the magnetic order evolves, in this complex multicomponent system, as a function of temperature and superlattice periodicity. We demonstrate that the length scale of the coupling between the antiferromagnetic and paramagnetic phases is longer than that of the electronic metal-insulator phase transition—despite being subsidiary to it. This can be explained via a Landau theory—where the bulk magnetic energy plus a gradient cost between magnetic and nonmagnetic phases is considered. These results provide a clear understanding of the coupling of magnetic transitions in systems sharing identical order parameters.
DOI: 10.26037/yareta:hijzth2u4zam3lpmpnwqpk3lya
title: REBCO tapes for applications in ultra-high fields: critical current surface and scaling relations

description: REBa2Cu3O7−x (REBCO) tapes produced by leading manufacturers were tested at UNIGE to characterize the dependence of the critical current on temperature, field intensity and orientation. This measurement campaign was carried out in the frame of international collaborations having the common goal of developing technology for ultra-high field magnets in the 30–50 T range. The examined samples differ in many respects, e.g. processing methods, thickness of the superconducting layer, Rare Earth element in REBCO, and type of artificial pinning centers (3D nanoparticles vs extended 1D nanorods). We measured the transport critical current of full-width tapes at 4.2 K and 20 K in magnetic fields up to 19 T and at various orientations of the field with respect to the tape surface. Additionally, magnetic characterizationwas conducted over a wider temperature range (4.2–77 K). The highly engineered vortex pinning results in outstanding critical current performance for all examined tapes: the
non-copper critical current density, i.e. the critical current divided by the wire cross-section area minus the Cu area, ranges between 1500 and 2000 A mm−2 at 4.2 K, 19 T and close to 1000 A mm−2 at 20 K, 19 T in the perpendicular field orientation. We obtained scaling expressions for the critical current surface based on the analysis of the pinning-force curves butthe pinning-force shape parameters were found to vary from one manufacturer to another. The results presented in this work may offer valuable information not only to magnet designers but also to manufacturers looking to optimize their tapes and achieve better performance.
DOI: 10.26037/yareta:jb4cx2egzvccvicdx66dl6i6li
title: Full-length and N-terminally truncated recombinant interleukin-38 variants are similarly inefficient in antagonizing interleukin-36 and interleukin-1 receptors 

description: Additional dataset for revised manuscript
DOI: 10.26037/yareta:lb356tpupbcfteq4t4ikalhapq
title: Toxoplasma gondii devoid of an apicoplast - Addition

description: This is an addition to a previously published dataset termed 'Toxoplasma gondii devoid of an apicoplast', accessible under 10.26037/yareta:kc446nwxifbvtb5z7l2f6tayga

This dataset is associated with a study describing the investigation of Toxoplasma gondii devoid of its apicoplast organelle.

The apicoplast, a remnant plastid organelle from secondary endosymbiosis, is crucial for most medically relevant Apicomplexa. Although it has lost its photosynthetic function, it retains essential metabolic pathways. In this study, we examine the four primary metabolic pathways in the Toxoplasma gondii apicoplast, along with an accessory pathway, and identify conditions that can bypass these pathways either partially or completely. Contrary to the belief that the apicoplast is indispensable for T. gondii, we show that bypassing all pathways renders the apicoplast non-essential. We demonstrate that T. gondii lacking an apicoplast (T. gondii−Apico) can be sustained indefinitely in culture, providing a unique model to investigate the organelle’s functions. Comprehensive metabolomic, transcriptomic, and proteomic analyses of T. gondii−Apico reveal significant adaptation mechanisms following the organelle’s loss and identify approximately 100 putative apicoplast proteins, characterized by their reduced abundance in the absence of the organelle. Furthermore, T. gondii−Apico exhibit decreased sensitivity to compounds targeting the apicoplast, aiding in the discovery of new apicoplast-targeting drugs. The ability to culture T. gondii without its plastid offers new opportunities to explore the organelle and develop novel therapeutic strategies against apicomplexans.

This dataset includes data on 

1) the analyses of fatty acids in parasites with or without the organelle following 13C labelling - performed in the Soldati-Favre laboratory at the University of Geneva
2) transcriptomic analysis comparing parasites with and without the organelle - performed by the iGe3 Institute of Genetics and Genomics in Geneva (University of Geneva)

All details concerning the analysis can be found in the associated publication and the included text files.
DOI: 10.26037/yareta:ovnx4d7syjgxbjy5527hyztamy
title: Business Note

description: Description of Greek Documentary Papyri: Business Note

https://grammateus.unige.ch/descriptions/business_note

https://web.archive.org/web/20241001141751/https://grammateus.unige.ch/descriptions/business_note

Related archives:
- authority lists https://doi.org/10.26037/yareta:qobfo4lb2vezplc45wvydalevq
- grammateus typology https://doi.org/10.26037/yareta:pwpy6suznrdnjg67znabqr2vl4

Past version:
https://doi.org/10.26037/yareta:xhv3nirtjbfp3jtip73usuv3jm
DOI: 10.26037/yareta:rt7uwof32jhdxbs54h7qhx4q5a
title: Assessing the ubiquity of Bloch domain walls in ferroelectric lead titanate superlattices

description: The observation of unexpected polarization textures such as vortices, skyrmions and merons in various oxide heterostructures has challenged the widely accepted picture of ferroelectric domain walls as being Ising-like. Bloch components in the 180deg domain walls of PbTiO3 have recently been reported in PbTiO3/SrTiO3 superlattices and linked to domain wall chirality. While this opens exciting perspectives, the ubiquitous nature of this Bloch component remains to be further explored. In this work, we present a comprehensive investigation of domain walls in PbTiO3/SrTiO3 superlattices, involving a combination of first- and second-principles calculations, phase-field simulations, diffuse scattering calculations, and synchrotron based diffuse x-ray scattering. Our theoretical calculations highlight that the previously predicted Bloch polarization in the 180° domain walls in PbTiO3/SrTiO3 superlattices might be more sensitive to the boundary conditions than initially thought and is not always expected to appear. Employing diffuse scattering calculations for larger systems we develop a method to probe the complex structure of domain walls in these superlattices via diffuse x-ray scattering measurements. Through this approach, we investigate depolarization-driven ferroelectric polarization rotation at the domain walls. Our experimental findings, consistent with our theoretical predictions for realistic domain periods, do not reveal any signatures of a Bloch component in the centres of the 180° domain walls of PbTiO3/SrTiO3 superlattices, suggesting that the precise nature of domain walls in the ultrathin PbTiO3 layers is more intricate than previously thought and deserves further attention.
DOI: 10.26037/yareta:sw2t72u4q5f3fcdbm2ou6d5bda
title: Assessment of Prehospital Tracheal Intubation Technique using Videolaryngoscopy: Randomized Controlled Trial

description: Randomized controlled trial to assess the most effective intubation technique using videolaryngoscopy between the double 'DL-VL sequence' and videolaryngoscopy alone for tracheal intubation in a simulated prehospital environment with the patient lying on the ground.
DOI: 10.26037/yareta:swsqivwptvga7g6yx5eb2zovqu
title: Yu_Kumar_NatureCommunications_2024

description: Data published in Yun, Kumar, et al., Nature Communications, 2024