cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10672637
title: Bouamir Weather Station Data

description: The Congo Basin Institute is a center of higher learning and scientific excellence in Central Africa. The Congo Basin Institute and the Ministry of Forestry and Wildlife (MINFOF) manage a weather station at Bouamir (coordinates: 3°11’26″N 12°48’43E). Weather data has been collected continuously at Bouamir since 2017 via two different methods (davis/weatherlink and manual). Data here include raw weather data, cleaned weather data, the code to clean these data in R, and summary plots of the weather data in R.
DOI: 10.5281/zenodo.10672638
title: Bouamir Weather Station Data

description: The Congo Basin Institute is a center of higher learning and scientific excellence in Central Africa. The Congo Basin Institute and the Ministry of Forestry and Wildlife (MINFOF) manage a weather station at Bouamir (coordinates: 3°11’26″N 12°48’43E). Weather data has been collected continuously at Bouamir since 2017 via two different methods (davis/weatherlink and manual). Data here include raw weather data, cleaned weather data, the code to clean these data in R, and summary plots of the weather data in R.
DOI: 10.6084/m9.figshare.7170614
title: Additional file 17: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S5. List of 6 down-regulated planthopper genes that are potentially targeted by planthopper-specific vsiRNAs. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.7170614.v1
title: Additional file 17: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S5. List of 6 down-regulated planthopper genes that are potentially targeted by planthopper-specific vsiRNAs. (XLSX 54 kb)
DOI: 10.6084/m9.figshare.7170626
title: Additional file 18: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S6. Primers used for RT-PCR analysis of vsiRNAs in RSV-infected rice and RSV-infected planthopper. (XLS 34 kb)
DOI: 10.6084/m9.figshare.7170626.v1
title: Additional file 18: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S6. Primers used for RT-PCR analysis of vsiRNAs in RSV-infected rice and RSV-infected planthopper. (XLS 34 kb)
DOI: 10.6084/m9.figshare.7170638
title: Additional file 1: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S1. Summary of sRNA sequencing data in mock-inoculated and RSV-infected rice samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7170638.v1
title: Additional file 1: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S1. Summary of sRNA sequencing data in mock-inoculated and RSV-infected rice samples. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.7170650
title: Additional file 2: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S2. Summary of sRNA sequencing data in mock-inoculated and RSV-infected planthopper samples. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7170650.v1
title: Additional file 2: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Table S2. Summary of sRNA sequencing data in mock-inoculated and RSV-infected planthopper samples. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.7170662
title: Additional file 3: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replicate of RSV-infected rice sample (B). Numbers of sRNAs with the same size but different 5â ˛ terminal nucleotides were drawn in different colors. (XLS 28 kb)
DOI: 10.6084/m9.figshare.7170662.v1
title: Additional file 3: of Rice stripe virus-derived siRNAs play different regulatory roles in rice and in the insect vector Laodelphax striatellus

description: Figure S1. Size distribution of sRNAs in the mock-inoculated rice samples (A) and the second replicate of RSV-infected rice sample (B). Numbers of sRNAs with the same size but different 5â ˛ terminal nucleotides were drawn in different colors. (XLS 28 kb)
DOI: 10.6084/m9.figshare.19753582
title: Data for Methane diffusion through nano pore-throat geometry: a molecular dynamics simulation study

description: In this dataset, the data is sorted first by phases (in folders  labeled as Pure material and Methane mixture). Then dataset is sorted by the components (in folders labeled Methane, Methane with water...). Each file name contains the throat width (for example, "msd.6Å.out" signifies a throat with of 6 Angstroms). Temperature and pressure conditions are signified in the folders or files. There  are two file types, ".out" and ".lammpstrj" for the mean squared displacement and summarized output data, respectively. In the ".out"  file, the first column signifies the simulation time in fs, the  second column shows the  mean squared displacement  (MSD) for methane molecules. The ".lammpstrj" file contains the simulation time, number of atoms, and simulation box size in the first nine lines. From the line ten, eleven columes represent atom's id, type, x-coordinate, y-coordinate, z-coordinate, x-velocity, y-velocity, z-velocity, x-force, y-force, and z-force, respectively.
DOI: 10.6084/m9.figshare.19753585
title: AGLC-2015

description: AGLC-2015
DOI: 10.6084/m9.figshare.7170692
title: Additional file 1: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S1.The clinic-pathological factors of 112 GC patients. (XLS 10 kb)
DOI: 10.6084/m9.figshare.7170692.v1
title: Additional file 1: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S1.The clinic-pathological factors of 112 GC patients. (XLS 10 kb)
DOI: 10.6084/m9.figshare.7170701
title: Additional file 2: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S2. Univariate and multivariate analyses of clinicopathologic factors for overall survival in 112 patients with GC. (XLS 10 kb)
DOI: 10.6084/m9.figshare.7170701.v1
title: Additional file 2: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S2. Univariate and multivariate analyses of clinicopathologic factors for overall survival in 112 patients with GC. (XLS 10 kb)
DOI: 10.6084/m9.figshare.7170728
title: Additional file 4: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S3. A list of the top ten potential HOXC-AS3-interacting protein candidates in BGC-823 cells based on RNA-protein pull-down assays and mass spectrometry analysis. (XLS 15 kb)
DOI: 10.6084/m9.figshare.7170728.v1
title: Additional file 4: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S3. A list of the top ten potential HOXC-AS3-interacting protein candidates in BGC-823 cells based on RNA-protein pull-down assays and mass spectrometry analysis. (XLS 15 kb)
DOI: 10.25387/g3.11365043
title: Supplemental Material for Zhao et al., 2020

description: Figure S1 Intracellular ROS levels of other zinc sensitive gene mutants in response to excess zinc.Figure S2 Relative expression levels of genes involved in oxidative stress response.Figure S3 Increased intracellular ROS levels of zinc sensitive gene mutants.Figure S4 Phenotypes of zinc sensitive deletion mutants.
DOI: 10.25387/g3.11365043.v1
title: Supplemental Material for Zhao et al., 2020

description: Figure S1 Intracellular ROS levels of other zinc sensitive gene mutants in response to excess zinc.Figure S2 Relative expression levels of genes involved in oxidative stress response.Figure S3 Increased intracellular ROS levels of zinc sensitive gene mutants.Figure S4 Phenotypes of zinc sensitive deletion mutants.
DOI: 10.6084/m9.figshare.7170740
title: Additional file 5: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S4. The mRNA variation abundance (â Ľ1.5-fold) for HOXC-AS3-knockdown in BGC-823 cells. (XLS 491 kb)
DOI: 10.6084/m9.figshare.7170740.v1
title: Additional file 5: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S4. The mRNA variation abundance (â Ľ1.5-fold) for HOXC-AS3-knockdown in BGC-823 cells. (XLS 491 kb)
DOI: 10.6084/m9.figshare.12413630
title: Additional file 10 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 10: Supplementary Table S2. Genes annotated in the hyper-/hypo-DMRs associated with superovulation with different dosages of hMG.
DOI: 10.6084/m9.figshare.12413630.v1
title: Additional file 10 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 10: Supplementary Table S2. Genes annotated in the hyper-/hypo-DMRs associated with superovulation with different dosages of hMG.
DOI: 10.6084/m9.figshare.7170752
title: Additional file 6: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S5. The mRNA variation abundance (â Ľ1.5-fold) for YBX1-knockdown in BGC-823 cells. (XLS 236 kb)
DOI: 10.6084/m9.figshare.7170752.v1
title: Additional file 6: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S5. The mRNA variation abundance (â Ľ1.5-fold) for YBX1-knockdown in BGC-823 cells. (XLS 236 kb)
DOI: 10.6084/m9.figshare.7170764
title: Additional file 7: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S6. The list of primers and siRNA /ASO sequence. (XLS 20 kb)
DOI: 10.6084/m9.figshare.7170764.v1
title: Additional file 7: of A novel long noncoding RNA HOXC-AS3 mediates tumorigenesis of gastric cancer by binding to YBX1

description: Table S6. The list of primers and siRNA /ASO sequence. (XLS 20 kb)
DOI: 10.5281/zenodo.10672700
title: IODP Expedition 393 Interstitial water composite report

description: This composite report includes data from numerous interstitial water (IW) analyses (e.g., ICP-LIQUIDS and IONCHROM) in a variable set of columns. Each row combines the data from several tests (groups of measurements made on the same sample at the same time) for a particular IW sample. If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate analysis (ALKALINITY, ICP-LIQUIDS, IONCHROM, SALINITY, SPEC, TITRATOR, and potentially others). Major and minor elements were determined by inductively coupled plasma-atomic emission spectrocsopy (ICP-LIQUIDS). Cations and anions were measured by ion chromatography (IONCHROM). Complex ions were measured by colorimetric measurements using a UV-VIS spectrometer (SPEC). Alkalinity and chloride was measured by titration (ALKALINITY and TITRATOR). Dissolved carbon (DC), dissolved inorganic carbon (DIC), and dissolved organic carbon (DOC) were measured by combustion in a total organic carbon (TOC) analyzer. Salinity was measured by refractometer (SALINITY). pH was measured by ion-selective electrode as part of the alkalinity procedure and is reported in the ALKALINITY analysis.
DOI: 10.5281/zenodo.10672701
title: IODP Expedition 393 Interstitial water composite report

description: This composite report includes data from numerous interstitial water (IW) analyses (e.g., ICP-LIQUIDS and IONCHROM) in a variable set of columns. Each row combines the data from several tests (groups of measurements made on the same sample at the same time) for a particular IW sample. If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate analysis (ALKALINITY, ICP-LIQUIDS, IONCHROM, SALINITY, SPEC, TITRATOR, and potentially others). Major and minor elements were determined by inductively coupled plasma-atomic emission spectrocsopy (ICP-LIQUIDS). Cations and anions were measured by ion chromatography (IONCHROM). Complex ions were measured by colorimetric measurements using a UV-VIS spectrometer (SPEC). Alkalinity and chloride was measured by titration (ALKALINITY and TITRATOR). Dissolved carbon (DC), dissolved inorganic carbon (DIC), and dissolved organic carbon (DOC) were measured by combustion in a total organic carbon (TOC) analyzer. Salinity was measured by refractometer (SALINITY). pH was measured by ion-selective electrode as part of the alkalinity procedure and is reported in the ALKALINITY analysis.
DOI: 10.6084/m9.figshare.12413660
title: Additional file 14 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 14: Supplementary Table S3. Overlapped genes annotated in the DMRs between the same dosage of FSH and hMG treatment.
DOI: 10.6084/m9.figshare.12413660.v1
title: Additional file 14 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 14: Supplementary Table S3. Overlapped genes annotated in the DMRs between the same dosage of FSH and hMG treatment.
DOI: 10.6084/m9.figshare.7170797
title: Additional file 1: of Rhomboid domain-containing protein 1 promotes breast cancer progression by regulating the p-Akt and CDK2 levels

description: Table S1. The primers that were used in quantitative real-time PCR reaction. (XLS 9 kb)
DOI: 10.6084/m9.figshare.7170797.v1
title: Additional file 1: of Rhomboid domain-containing protein 1 promotes breast cancer progression by regulating the p-Akt and CDK2 levels

description: Table S1. The primers that were used in quantitative real-time PCR reaction. (XLS 9 kb)
DOI: 10.6084/m9.figshare.7170812
title: Additional file 2: of Rhomboid domain-containing protein 1 promotes breast cancer progression by regulating the p-Akt and CDK2 levels

description: Table S2. Differentially expressed genes were listed in MCF7 RHBDD1 knock-out cells versus wild-type cells. (XLS 500 kb)
DOI: 10.6084/m9.figshare.12413693
title: Additional file 6 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 6: Supplementary Table S1. Genes annotated in the hyper-/hypo-DMRs associated with superovulation with different dosages of FSH.
DOI: 10.6084/m9.figshare.7170812.v1
title: Additional file 2: of Rhomboid domain-containing protein 1 promotes breast cancer progression by regulating the p-Akt and CDK2 levels

description: Table S2. Differentially expressed genes were listed in MCF7 RHBDD1 knock-out cells versus wild-type cells. (XLS 500 kb)
DOI: 10.6084/m9.figshare.12413693.v1
title: Additional file 6 of Single-cell DNA methylation sequencing reveals epigenetic alterations in mouse oocytes superovulated with different dosages of gonadotropins

description: Additional file 6: Supplementary Table S1. Genes annotated in the hyper-/hypo-DMRs associated with superovulation with different dosages of FSH.
DOI: 10.5281/zenodo.10680531
title: Development of BOLD response to motion in human infants

description: Tables and Figures sources for  " Biagi L, Tosetti M, Crespi SA, Morrone MC, “Development of BOLD response to motion in human infants”. Journal of Neuroscience, 2023 May 24;43(21):3825-3837. https://doi.org/10.1523/JNEUROSCI.0837-22.2023
DOI: 10.5281/zenodo.10680532
title: Development of BOLD response to motion in human infants

description: Tables and Figures sources for  " Biagi L, Tosetti M, Crespi SA, Morrone MC, “Development of BOLD response to motion in human infants”. Journal of Neuroscience, 2023 May 24;43(21):3825-3837. https://doi.org/10.1523/JNEUROSCI.0837-22.2023
DOI: 10.6084/m9.figshare.11889441
title: Establish an <i>In Vitro</i> Cell Model to Explore the Impacts of UVA on Human Corneal Endothelial Wound Healing

description: To provide scientific data for clinical practice in making strategies for accelerating corneal endothelial wound healing, we investigated the impact of UVA on the corneal endothelial wound healing process and the underlying mechanism using an <i>in vitro</i> cell model. An <i>in vitro</i> cell model for corneal endothelial wound healing was established by scratching the <i>in vitro</i> cultured human corneal endothelial cell (HCEnC) confluent layer. Then, we investigated the impacts of UVA irradiation and Ascorbic acid-2-phosphate (Asc-2p) on the wound healing process of the <i>in vitro</i> HCEnC model by examining wound-healing index, F-actin<sup>+</sup> rate, Ki-67<sup>+</sup> rate, and ROS production. After scratching, the Ki-67<sup>+</sup> and F-actin<sup>+</sup> HCEnCs occupied the scratching gap. Furthermore, the F-actin<sup>+</sup> rates were significantly higher than Ki-67<sup>+</sup> rates in the wound closure area. After irradiated with UVA, the wound-healing indexes, Ki-67<sup>+</sup> rates and F-actin<sup>+</sup> rates of the wound-healing model significantly reduced, whereas the ROS production significantly increased in a dose-dependent manner. Pretreatment with Asc-2p significantly reduced the ROS production as well as increased the wound-healing indexes, Ki-67<sup>+</sup>rates and F-actin<sup>+</sup> rates of the UVA irradiated wound-healing model. The migration of HCEnC plays a major role in the wound healing process of the established cell model, which is like the wound healing process <i>in vivo</i>. UVA decreases the wound closure of the <i>in vitro</i> HCEnC model dose-dependently, while antioxidant Asc-2p can attenuate the damage to UVA to HCEnCs probably via reducing ROS to improve their migration.
DOI: 10.6084/m9.figshare.11889441.v1
title: Establish an <i>In Vitro</i> Cell Model to Explore the Impacts of UVA on Human Corneal Endothelial Wound Healing

description: To provide scientific data for clinical practice in making strategies for accelerating corneal endothelial wound healing, we investigated the impact of UVA on the corneal endothelial wound healing process and the underlying mechanism using an <i>in vitro</i> cell model. An <i>in vitro</i> cell model for corneal endothelial wound healing was established by scratching the <i>in vitro</i> cultured human corneal endothelial cell (HCEnC) confluent layer. Then, we investigated the impacts of UVA irradiation and Ascorbic acid-2-phosphate (Asc-2p) on the wound healing process of the <i>in vitro</i> HCEnC model by examining wound-healing index, F-actin<sup>+</sup> rate, Ki-67<sup>+</sup> rate, and ROS production. After scratching, the Ki-67<sup>+</sup> and F-actin<sup>+</sup> HCEnCs occupied the scratching gap. Furthermore, the F-actin<sup>+</sup> rates were significantly higher than Ki-67<sup>+</sup> rates in the wound closure area. After irradiated with UVA, the wound-healing indexes, Ki-67<sup>+</sup> rates and F-actin<sup>+</sup> rates of the wound-healing model significantly reduced, whereas the ROS production significantly increased in a dose-dependent manner. Pretreatment with Asc-2p significantly reduced the ROS production as well as increased the wound-healing indexes, Ki-67<sup>+</sup>rates and F-actin<sup>+</sup> rates of the UVA irradiated wound-healing model. The migration of HCEnC plays a major role in the wound healing process of the established cell model, which is like the wound healing process <i>in vivo</i>. UVA decreases the wound closure of the <i>in vitro</i> HCEnC model dose-dependently, while antioxidant Asc-2p can attenuate the damage to UVA to HCEnCs probably via reducing ROS to improve their migration.
DOI: 10.6084/m9.figshare.11365163
title: Genetic diversity and phylogenetic analysis of Chinese Han and Li ethnic populations from Hainan Island by 30 autosomal insertion/deletion polymorphisms

description: With the characteristics of low mutation rate, length variation and short amplicon size, insertion/deletion polymorphisms (InDels) have the advantages of both short tandem repeats (STRs) and single nucleotide polymorphisms (SNPs). Herein, people of two ethnicities from Hainan Island were genotyped for the first time using the Investigator DIPplex kit. We investigated the forensic parameters of the 30 InDels and the phylogenetic relationships among different populations. The accumulated powers of discrimination and powers of exclusion were 0.999 999 999 9646 and 0.9897 in the Hainan Han population and 0.999 999 999 9292 and 0.9861 in the Hainan Li population, respectively. Additionally, population comparisons among geographically, ethnically and linguistically diverse populations via cluster heatmap, multidimensional scaling, principal component analysis, phylogenetic tree and STRUCTURE analyses demonstrated that the Hainan Han population had genetic similarities to the other Han, She and Tujia populations, while the Hainan Li population had close genetic relationships to the Zhuang and Miao groups; both populations had a high degree of genetic differentiation from most Turkic-speaking populations. Aforementioned results suggested that the 30 autosomal InDels are highly polymorphic and informative, which are suitable for human identification and population genetics.
KEYPOINTSFour hundred and forty-five Chinese individuals from two ethnicities (Hainan Han and Hainan Li) were firstly analyzed by 30 autosomal InDels included in the Investigator DIPplex panel.Forensic parameters of the 30 InDels in the two populations showed high polymorphism and universality for human identification purposes.The Investigator DIPplex panel had a certain capacity of differentiating intercontinental populations and different language populations. Four hundred and forty-five Chinese individuals from two ethnicities (Hainan Han and Hainan Li) were firstly analyzed by 30 autosomal InDels included in the Investigator DIPplex panel. Forensic parameters of the 30 InDels in the two populations showed high polymorphism and universality for human identification purposes. The Investigator DIPplex panel had a certain capacity of differentiating intercontinental populations and different language populations.