cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.1475457
title: Soil organic carbon content in x 5 g / kg at 6 standard depths (0, 10, 30, 60, 100 and 200 cm) at 250 m resolution

description: Soil organic carbon content in × 5 g / kg (to convert to % divide by 2) at 6 standard depths (0, 10, 30, 60, 100 and 200 cm) at 250 m resolution. The maps are provided using Byte type to significantly reduce file size. Predicted from a global compilation of soil points. Also available for download: soil organic stock maps in in kg / m<sup>2</sup> (https://doi.org/10.5281/zenodo.1475453) and bulk density maps in kg / m<sup>3</sup> (https://doi.org/10.5281/zenodo.1475970). Processing steps are described in detail <strong>here</strong>. Antarctica is not included. To access and visualize maps use: OpenLandMap.org If you discover a bug, artifact or inconsistency in the maps, or if you have a question please use some of the following channels: Technical issues and questions about the code: https://gitlab.com/openlandmap/global-layers/issues General questions and comments: https://disqus.com/home/forums/landgis/ All files internally compressed using "COMPRESS=DEFLATE" creation option in GDAL. File naming convention: sol = theme: soil, organic.carbon = variable: soil organic carbon content in x 5 g / kg, usda.6a1c = determination method: laboratory method code, m = mean value, 250m = spatial resolution / block support: 250 m, b10..10cm = vertical reference: 10 cm depth below surface, 1950..2017 = time reference: period 1950–2017, v0.2 = version number: 0.2,
description: {"references": ["USDA-NRCS, (2014) Laboratory Methods Manual (SSIR 42). U.S. Department of Agriculture, Natural Resources Conservation Service, National Soil Survey Center.", "Hengl T, Mendes de Jesus J, Heuvelink GBM, Ruiperez Gonzalez M, Kilibarda M, Blagoti\u0107 A, et al. (2017) SoilGrids250m: Global gridded soil information based on machine learning. PLoS ONE 12(2): e0169748.", "Hengl, T., MacMillan, R.A., (2019). Predictive Soil Mapping with R. OpenGeoHub foundation, Wageningen, the Netherlands, 370 pages, www.soilmapper.org, ISBN: 978-0-359-30635-0."]}
DOI: 10.5281/zenodo.4033353
title: Single fiber tensile test - Glass and Carbon fibers

description: Single fiber test data and SEM scan behind the publications 

Kumar, R., L.P. Mikkelsen, H. Lilholt, B. Madsen, Understanding the mechanical response of glass and carbon fibres: stress-strain analysis and modulus determination IOP Conf. Ser.: Mater. Sci. Eng. 942, 012033, https://doi.org/10.1088/1757-899X/942/1/012033, 2020

Rajnish Kumar, Lars P Mikkelsen, Hans Lilholt and Bo Madsen, Experimental Method for Tensile Testing of Unidirectional Carbon Fibre Composites Using Improved Specimen Type and Data Analysis, Materials, 14, 3939, https://doi.org/10.3390/ma14143939, 2021.

and

Rajnish Kumar, Lars P Mikkelsen, Hans Lilholt and Bo Madsen, Weibull parameters determined from a comprehensive dataset of tensile testing fo single carbon fibers, Submitted, 2024

to where a reference should be given. 

A video describing the test-setup can be found in the following link: https://panopto.dtu.dk/Panopto/Pages/Viewer.aspx?id=50c10945-0612-4126-9e99-b00700cfbaf2&start=0 

The data-set cover single fiber test of a carbon and glass fiber in the gauge section range from 20-80 mm for carbon fiber and from 40-80 mm for glass fiber. There are three files for each gauge-section:

... Data.xslx: The individual tensile curves with one sheet for each fiber. There are around 150 fibers in each set

... Results.xslx: One excel-sheet containing a summary of the parameters obtained for the individual fibers.

....Figures.doc: Word file showing a plot of the graphs 

In addition to this, there are for the carbon and glass fiber case a test setup complience calculation saved in the 

.... Compliance.xslx excel-sheet

and SEM scans of a large approximately 2x20 mm cross-section of a pultruded profile based on the carbon fibers. This scan can be used for validating the fiber diameter distribution found in the single fiber testing. The SEM scan is saved in the

Carbon_HyFisyn... files

This set of files also include a matlab file (.m) which are used for determine the fiber volume fraction of the composite. 

 

Scripts to plot and analysing the data can be found on the following places:

Google Colab: https://colab.research.google.com/drive/1GdmRGOuy6SUuRXdbbyxemczgAUZl8JaM?usp=sharing

Code Ocean:  Lars P. Mikkelsen, Rajnish Kumar (2022) Understanding the mechanical response of glass and carbon fibres: stress-strain analysis and modulus determination [Source Code]. https://doi.org/10.24433/CO.5998905.v1
DOI: 10.5281/zenodo.5399259
title: Japanese Black Beef Cow Behavior Classification Dataset

description: Licensed under: Attribution-NonCommercial-NoDerivatives 4.0 International https://creativecommons.org/licenses/by-nc-nd/4.0/legalcode This data set contains tri-axial accelerometer sensor data with thirteen different labeled cow behaviors. This data was gathered with a 16bit +/- 2g Kionix KX122-1037 accelerometer attached to the neck of six different Japanese Black Beef Cows at a cow farm of Shinshu University in Nagano, Japan.<br> <br> The data gathering took place over the course of two days in which the cows were allowed to roam freely in two different areas, namely, a grass field and farm pens, while being filmed with Sony FDR-X3000 4K video cameras. The timestamps of the video and accelerometer data were matched while human observers which included behavior experts and non-experts labeled the data from the video footage. 197 minutes of data comprising thirteen different behaviors were labeled. Accelerometer sampling rate was set to 25Hz.<br> The data is split into six .csv files which represents each of the 6 cows above. The columns of these files are defined as follows:<br> | AccX [g] | AccY [g] | AccZ [g] | label [-] |<br> |---------------------|---------------------|---------------------|------------------|<br> | X-axis acceleration | Y-axis acceleration | Z-axis acceleration | labeled behavior | <br> The gathering of this data with these cows was reviewed and approved by the Institutional Animal Careand Use Committee of Shinshu University.
DOI: 10.5281/zenodo.7941495
title: High-resolution configuration of the hydrodynamical ocean model SYMPHONIE (version 249) over the South China Sea

description: This file includes the codes of the hydrodynamical ocean model SYMPHONIE version 249 and the South China Sea configuration, together with input files and codes to generate figures in the study of water, heat and salt budget over this Southeast Asian Sea. archive_symphonie_v249.tar.gz contains the model codes and configurations DataValid.tar.gz contains the data used to validate the model Rivers.tar.gz includes river discharges in the configuration FigurePlot.tar.gz gathers codes to generate figures
DOI: 10.5281/zenodo.8430279
title: Vertical profiles of stable water isotopes and thermodynamic properties from research flights during the L-WAIVE field campaign in June 2019

description: This datasets contains the measurements of stable water isotopes conducted during the Lacustrine-Water vApor Isotope inVentory Experiment (L-WAIVE) field campaign taking place in June 2019 in the Annecy valley in the French Alps (Chazette et al. 2021). The measurements were conducted using a Picarro laser spectrometer L2130-i that was installed on an ultralight aircraft. The Picarro measurements of atmospheric humidity are merged measurements of thermodynamic properties by a fast-response temperature and humidity probe (iMet XQ-2; see also Chazette et al. 2021) interpolated on 10s temporal resolution.


The data is provided on a one file per flight. All variables are described in README.


This dataset has been used in Thurnherr et al. (submitted) for a comparison study of stable water isotopes measurements from various platforms and COSMOiso model simulations.
DOI: 10.58119/ulg/l8pjjk
title: Small-angle scattering and sorption data in SBA-15 materials

description: This data contains small angle x-ray scattering patterns and sorption isotherms measured on SBA-15 samples. Water sorption at 40C, nitrogen sorption at 77K, argon sorption at 87K.
DOI: 10.6084/m9.figshare.25532389.v1
title: <b>Chromosomal-level genome assembly and single-nucleotide polymorphism sites of </b><b>black-faced spoonbill </b><b><i>Platalea minor</i></b>

description: <i>Platalea minor</i>, the black-faced spoonbill (Threskiornithidae) is a wading bird that is confined to coastal areas in East Asia. Due to habitat destruction, it has been classified by The International Union for Conservation of Nature (IUCN) as globally endangered species. However, the lack of genomic resources hinders our understanding of their biology and diversity, as well as the implementation of conservation measures based on genetic information or markers. Here, we report the first chromosomal-level genome assembly of P. minor using a combination of PacBio SMRT and Omni-C scaffolding technologies. The assembled genome (1.24 Gb) contains 95.33% of the sequences anchored to 31 pseudomolecules. The genome assembly also has high sequence continuity with scaffold length N50 = 53 Mb. A total of 18,780 protein-coding genes were predicted, and high BUSCO score completeness (97.3% of BUSCO aves_odb10 genes) was also revealed. A total of 6,155,417 bi-allelic SNPs were also revealed from 13 P. minor individuals, accounting for ~5% of the genome. The resource generated in this study offers the new opportunity for studying the black-faced spoonbill, as well as carrying out conservation measures of this ecologically important spoonbill species.
DOI: 10.6084/m9.figshare.25679748
title: Supplementary Material for: Food for thought: The effects of feeding on neurogenesis in the ball python, Python regius

description: Introduction
Pythons are a well-studied model of postprandial physiological plasticity. Consuming a meal evokes a suite of physiological changes in pythons including one of the largest documented increases in post-feeding metabolic rates relative to resting values. However, little is known about how this plasticity manifests in the brain. Previous work has shown that cell proliferation in the python brain increases six days following meal consumption. This study aimed to confirm these findings and build on them in the long term by tracking the survival and maturation of these newly created cells across a two-month period. 
Methods
We investigated differences in neural cell proliferation in ball pythons six days after a meal with immunofluorescence using the cell-birth marker 5-bromo-12’-deoxyuridine (BrdU). We investigated differences in neural cell maturation in ball pythons two months after a meal using double-immunofluorescence for BrdU and a reptilian ortholog of the neuronal marker Fox3. 
Results
We did not find significantly greater rates of cell proliferation in snakes six days after feeding, but we did observe more new cells in neurogenic regions in fed snakes two months after the meal. Feeding was not associated with higher rates of neurogenesis, but snakes that received a meal had higher numbers of newly created non-neuronal cells than fasted controls. We documented particularly high cell survival rates in the olfactory bulbs and lateral cortex.
Conclusions
Consuming a meal stimulates cell proliferation in the brains of ball pythons after digestion is complete, although this effect emerged at a later time point in this study than expected. Higher rates of proliferation partially account for greater numbers of newly created non-neuronal cells in the brains of fed snakes two months after the meal, but our results also suggest that feeding may have a mild neuroprotective effect. We captured a slight trend toward higher cell survival rates in fed snakes, and survival rates were particularly high in brain regions associated with olfactory perception and processing. These findings shed light on the relationship between energy balance and the creation of new neural cells in the brains of ball pythons.
DOI: 10.6084/m9.figshare.25991317
title: Supplementary Material for: Differential Neuroanatomical, Neurochemical, and Behavioral Impacts of Early-Age Isolation in a Eusocial Insect

description: Introduction: Social experience early in life appears to be necessary for the development of species-typical behavior. Although isolation during critical periods of maturation has been shown to impact behavior by altering gene expression and brain development in invertebrates and vertebrates, workers of some ant species appear resilient to social deprivation and other neurobiological challenges that occur during senescence or due to loss of sensory input. It is unclear if and to what degree neuroanatomy, neurochemistry, and behavior will show deficiencies if social experience in the early adult life of worker ants is compromised. Methods: We reared newly-eclosed adult workers of Camponotus floridanus under conditions of social isolation for 2 to 53 days, quantified brain compartment volumes, recorded biogenic amine levels in individual brains, and evaluated movement and behavioral performance to compare the neuroanatomy, neurochemistry, brood-care behavior, and foraging (predatory behavior) of isolated workers with that of workers experiencing natural social contact after adult eclosion. Results: We found that the volume of the antennal lobe, which processes olfactory inputs, was significantly reduced in workers isolated for an average of 40 days, whereas the size of the mushroom bodies, centers of higher-order sensory processing, increased after eclosion and was not significantly different from controls. Titers of the neuromodulators serotonin, dopamine, and octopamine remained stable and were not significantly different in isolation treatments and controls. Brood care, predation, and overall movement were reduced in workers lacking social contact early in life. Conclusion: These results suggest that the behavioral development of isolated workers of C. floridanus is specifically impacted by a reduction in the size of the antennal lobe. Task performance and locomotor ability therefore appear to be sensitive to a loss of social contact through a reduction of olfactory processing ability rather than change in the size of the mushroom bodies, which serve important functions in learning and memory, or the central complex, which controls movement.
DOI: 10.6084/m9.figshare.26319070
title: Supplementary Material for: A non-interventional, multicenter study to characterize the socio-demographics, clinical characteristics, and management of Generalized Pustular Psoriasis (GPP) patients in Spain: IMPULSE study

description: Background: Generalized pustular psoriasis (GPP) is a chronic, rare, and potentially life-threatening skin condition characterized by flares comprising widespread sterile pustules and systemic inflammation. Both the rarity and heterogeneity of the disease have made GPP classification and standardization of clinical criteria challenging. Before the approval of spesolimab (IL-36R antibody) in 2022 there were no approved treatments in the USA or Europe for GPP flares. Treatment for GPP has amounted to off-label use of medicines approved to treat plaque psoriasis. 
Our aim was to describe the socio-demographics, clinical characteristics, and treatment patterns of patients with GPP in Spain.
Methods: Non-interventional, descriptive, multi-center, retrospective chart review of patients diagnosed with GPP in Spain. 
Results: 56 patients (50% women) were included, with a mean (SD) age at diagnosis of 53.7 (20.5) and a mean (SD) time of follow-up of 3.7 (3.1) years. In 80% of patients, GPP diagnosis was associated with a flare and 67.3% had known risk factors for GPP [such as previous diagnosis or family history of plaque psoriasis, comorbidities, smoking or stress. Hypertension and plaque psoriasis were the most frequent comorbidities (44.6% each). The number of GPP flares per patient-year was 0.55 with (range 0-4) a mean (SD) body surface area involvement of 21.3% (19.1). The most frequent manifestations of GPP flares were pustules (88.5%), erythema (76.9%) and scaling (76.9%). Additionally, 65.4% of patients had plaque psoriasis, 53.8% had unspecified skin lesions, and 30.8% experienced pain. The treatments used for GPP flares were off-label conventional systemic drugs (75%), mostly corticosteroids, cyclosporine and acitretin. In the periods between flares, off-label biologics were used in 56.5% of patients. During the study period, 9 patients (16.1%) had at least one complication, and 5 of them required hospitalization.
Conclusion: This is the first multi-center study in Spanish GPP patients. Most patients were in their fifties, with personal or family history of plaque psoriasis, stress, smoking and a wide range of comorbidities and complications. Even though the number of flares per patient/year was 0.55, there was variability between patients. Both off-label conventional systemics and off-label biologics were used for flare management without a clear treatment pattern.
DOI: 10.6084/m9.figshare.26503045
title: Supplementary Material for: Acupuncture for Aromatase Inhibitor-Induced Arthralgia in Breast Cancer: An Umbrella Review

description: Abstract
Background: Acupuncture therapy shows promise in managing aromatase inhibitor-induced arthralgia (AIA) among breast cancer patients. An umbrella review synthesizes findings from systematic reviews and meta-analyses (SRs/MAs) to assess its effectiveness. Summary: This umbrella review aims to evaluate the effectiveness of acupuncture therapy in treating AIA among breast cancer patients by analyzing existing evidence from SRs/MAs. Key Messages: Evidence Evaluation: Six SRs/MAs were analyzed, revealing shortcomings in reporting quality, methodological quality, and evidence quality assessment.Methodological Analysis: Comprehensive searches across eight electronic databases were conducted. PRISMA, AMSTAR 2, and GRADE were utilized to assess reporting, methodological quality, and evidence quality, respectively.
Efficacy of Acupuncture: Despite methodological shortcomings, recent meta-subgroup analysis suggests the efficacy of acupuncture therapy for AIA patients, recommending a 10-session treatment course. Conclusion: Acupuncture is identified as a secure and effective remedy for AIA sufferers, yet further high-quality research is needed to strengthen the evidence base and endorse acupuncture as a viable treatment option.
DOI: 10.5281/zenodo.10626112
title: Daily surface temperature from three sensitivity ensembles of June-September 2018 and tridimensional temperature, salinity and currents on 16 and 31 July 2018 over the South China Sea

description: This dataset contains the outputs from three ensembles of 10 simulations performed over the South China Sea for summer 2018 with the ocean model SYMPHONIE (see Herrmann et al. 2023). The FULL ensemble takes into account tides and rivers and is full described in Herrmann et al. 2023. NoTide and NoRiver are the same as FULL, but NoTide ensemble only takes into account rivers, and the NoRiver ensemble only take into account tides. Members are numbered from M09 to M18.

uvTS3D_201807"day".M17_"ensemble".nc.gz contains the tridimensional temperature, salinity and currents of member M17 of the "ensemble" ensemble on the day "day" of July, 2018. For example uvTS3D_20180716_M17_FULL.nc.gz provides those variables for member M17 of the FULL ensemble on the 16th of July. Those variables are provided for the 16th and 31st of July for the 3 ensembles.

The files SST_daily_JJAS_M'XX'_"ensemble".nc.gz in the directory daily_SST_JJAS contains the daily sea surface temperature for each member "MXX" of each ensemble "ensemble" between June 1st and September 30th, 2018. For exemple SST_daily_JJAS_M12_NoRiver.nc.gz contains those variables for member M12 of the NoRiver ensemble. Those variables are provided for the 10 members of the 3 ensembles.

grid.nc contains all information about the Arakawa C grid (longitude, latitude, mask, mesh size etc).

Référence : Herrmann, M., To Duy, T., and Estournel, C.: Intraseasonal variability of the South Vietnam upwelling, South China Sea: influence of atmospheric forcing and ocean intrinsic variability, Ocean Science, 19, 453–467, https://doi.org/10.5194/os-19-453-2023, 2023
DOI: 10.5281/zenodo.12556662
title: Dataset for Paper Titled "First assessment of cloud-land coupling in LASSO Large-Eddy Simulations"

description: The attached two files were used for analysis in the paper "First assessment of cloud-land coupling in LASSO Large-Eddy Simulations." The NetCDF file included planetary boundary layer heights derived from lidar and radiosondes. The CSV file detailed the model configurations for selected case days in simulation sets ID1-5.
DOI: 10.5281/zenodo.12744436
title: Supporting data for: Ozone Formation Sensitivity to Precursors and Lightning in the Tropical Troposphere Based on Airborne Observations

description: We provide here the supporting data for our study on ozone formation sensitivity in the upper tropical troposphere based on in situ observations.
DOI: 10.5517/ccdc.csd.cc24tjbv
title: CCDC 1990737: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones, Piotr Kus|2020|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2fl72c
title: CCDC 2251842: Experimental Crystal Structure Determination

description: Related Article: Peter G. Jones|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.25152239
title: Supplementary Material for: Long-Term Follow-Up of Kidney Function after Acute Liver Failure or Acute Liver Injury: A Cohort Study

description: <b><i>Introduction:</i></b> Acute liver failure (ALF) is a rare disease with high mortality. Acute kidney injury (AKI) following ALF is frequent. We assessed AKI impact on long-term kidney function among ALF survivors. <b><i>Methods:</i></b> Observational cohort study including consecutive adult (age ≥16 years) patients with ALF or acute liver injury (ALI) admitted to a Portuguese tertiary center intensive care unit (ICU) between October 2013 and February 2020. KDIGO criteria were used to define AKI and chronic kidney disease (CKD). Primary outcome was the estimated glomerular filtration rate (eGFR), defined by the Chronic Kidney Disease Epidemiology Collaboration formula, at least 1 year after index ICU admission. <b><i>Results:</i></b> Among 104 patients with ALF (<i>n</i> = 74) or ALI (<i>n</i> = 30), mean (SD) age was 43.7 (18.0) years, and 44 were male. Among all patients (<i>n</i> = 104), following adjustment for age and SOFA score, AKI during the first 7 ICU days (<i>n</i> AKI = 57 and <i>n</i> renal replacement therapy [RRT] = 32) was independently associated with all-cause mortality (adjusted HR [95% CI] 11.61 [1.49–90.34]; <i>p</i> = 0.019). Among hospital survivors with long-term kidney function available (<i>n</i> = 56), median (interquartile range) &gt;1 year eGFR was 95.3 (75.0–107.7) mL/min/1.73 m<sup>2</sup> (mean [SD] follow-up of 3.1 [1.6] years). Among these hospital survivors, following adjustment for baseline eGFR, AKI during the first 7 ICU days (<i>n</i> AKI = 19 and <i>n</i> RRT = 10) was not associated with &gt;1 year eGFR (<i>p</i> = 0.15). At least 1 year after index ICU admission, 5 patients developed CKD, none RRT-dependent. <b><i>Conclusions:</i></b> Among ALF or ALI survivors, AKI was not associated with significant long-term loss of kidney function.