cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28794947.v1
title: Data for Soil denitrification rates, the abundance, diversity, composition, and interactions of denitrifying microorganisms under vegetation restoration in karst ecosystem.

description: Soil denitrification is a crucial process regulating soil nitrogen availability during vegetation restoration. However, the mechanisms involving the abundance, diversity, composition, and interactions of denitrifying microorganisms remain unclear, particularly in short-term vegetation restoration scenarios within fragile ecosystems. In this study, we investigated the relationship between soil denitrification rates and microbial traits across three vegetation restoration strategies in karst areas: forage grass, plantation forest, and a combination of plantation forest and forage grass. Compared to cropland, all vegetation restoration strategies increased soil denitrification rates by 45%–170%, with the highest rates observed in the combination of plantation forest and forage grass, alongside reduced nitrate nitrogen content in all restored treatments. Vegetation restoration also significantly altered the abundance, diversity, community composition, and interactions of denitrifying microorganisms. Specifically, the abundance of nirK- and nirS-harboring denitrifiers increased significantly under plantation forest and the combination of plantation forest and forage grass relative to control soils. Additionally, nirS richness was notably higher in plantation forest soils than in control soils. Co-occurrence network analysis indicated greater microbial interaction complexity under vegetation restoration than in the control, evidenced by enhanced topological features such as node and edge counts, particularly for nirK-carrying microorganisms across all strategies and for nirS in the combination of plantation forest and forage grass. Notably, while nirK abundance and nirS richness significantly contributed to soil denitrification rate changes, nirK and nirS network complexity were identified as the primary determinant of these rates. Thus, vegetation restoration, particularly the combination of plantation forest and forage grass, enhances soil denitrification rates by fostering interspecies interactions among denitrifying microorganisms, reducing nitrate nitrogen availability. These findings offer valuable insights for optimizing vegetation restoration strategies to improving soil nitrogen cycling through targeted management of denitrifying microorganisms and their interactions.
DOI: 10.6084/m9.figshare.26085748.v2
title: Full dataset - tree plot data and predictor variable values

description: Full dataset of tree cover characteristics derived from vegetation plots within the Greater Mahale Ecosystem, western Tanzania and predictor variables teste. Tree cover characteristics shown include tree species richness (number of species), species diversity (according to the Shannon Diversity Index), tree stand basal area (per plot), and tree density. Additional tabs show the response variable and their selected predictors.
DOI: 10.6084/m9.figshare.7371197.v2
title: Lu et al., 2019, GRL

description: Dataset used to plot the figures in the manuscript of Lu et al. (2018) submitted to GRL.
DOI: 10.6084/m9.figshare.7772753.v1
title: Personal Data Management Bingo: a drop-in activity

description: This game was adapted from Data Management Plan Bingo into an activity that could be done on a drop-in basis. No Data Management Plans are used. The practices on the Bingo cards are either good or bad personal data management practices. <br><br>This Bingo game was derived from Data Management Plan Bingo by Megan O'Donnell.<br>Attached files include:<br>- Instructions for making Bingo cards and playing- Numbered list of personal data management practices for calling out- 1 set of 10 different Personal Data Management Bingo cards<br>
DOI: 10.6084/m9.figshare.14368703.v1
title: HPDmobile H6 Environmental Data

description: Environmental data readings: temperature (degree C), relative humidity (rH%), indoor CO2 equivalent (ppm), total volatile organic compounds (ppb), illuminance (lux). Readings were collected every ten seconds from four different common areas inside the single family residence, for a period of 38 days. This zip folder contains csv files for each of the four hubs, for every day.
DOI: 10.6084/m9.figshare.25157849.v1
title: <b>Robust temporal adiabatic passage with perfect frequency conversion between detuned acoustic cavities</b>

description: Source data for the work entitled "Robust temporal adiabatic passage with perfect frequency conversion between detuned acoustic cavities".
DOI: 10.6084/m9.figshare.5086540.v1
title: Data from corrigendum of "Plant spatial patterns identify alternative ecosystem multifunctionality states in global drylands"

description: Corrected data for corrigendum of "Plant spatial patterns identify alternative ecosystem multifunctionality states in global drylands"
DOI: 10.17632/hwz2pm35xp
title: Benchmark data sets

description: A total of 12 software defect data sets from NASA were used in this study,The three most widely used datasets in these datasets: CM1, JM1 and PC1.
DOI: 10.6084/m9.figshare.13301348.v1
title: DATASET: Political representation in Latin America: Members of Parliament (Argentina, Brazil, Chile and Mexico)

description: Data collection, prosopographic, of 1,390 deputies from Argentina (period 2013/17 and 2015/19), Brazil (2015/2018), Chile (2014/2018) and Mexico (2015/2018). Origins and social and political trajectory. Data by category: personal (full name, date of birth), election date and legislative period, education and professional training, political affiliation and ideology, experience in national or local legislative positions, official links to data sources and auxiliary links to sources of data, and date of data collection.
DOI: 10.6084/m9.figshare.17079149.v1
title: Additional file 2 of miR-30b-5p inhibits proliferation, invasion, and migration of papillary thyroid cancer by targeting GALNT7 via the EGFR/PI3K/AKT pathway

description: Additional file 2. The clinical characteristics of 60 patients with papillary thyroid carcinoma.
DOI: 10.6084/m9.figshare.18677513.v1
title: The economic burden of overweight and obesity in Saudi Arabia

description: <b>Context</b>: The prevalence of overweight and obesity in Saudi Arabia has been rising. Although the health burden of excess weight is well established, little is known about the economic burden. <b>Aims</b>: To assess the economic burden—both direct medical costs and the value of absenteeism and presenteeism—resulting from overweight and obesity in Saudi Arabia. <b>Settings and Design</b>: The cost of overweight and obesity in Saudi Arabia was estimated from a societal perspective using an epidemiologic approach. <b>Methods and Materials</b>: Data were obtained from previously published studies and secondary databases. <b>Statistical analysis used: </b>Overweight/obesity-attributable costs were calculated for six major noncommunicable diseases; sensitivity analyses were conducted for key model parameters. <b>Results: </b>The impact of overweight and obesity for these diseases is found to directly cost a total of $3.8 billion, equal to 4.3 percent of total health expenditures in Saudi Arabia in 2019. Estimated overweight and obesity–attributable absenteeism and presenteeism costs a total of $15.5 billion, equal to 0.9 percent of GDP in 2019. <b>Conclusions: </b>Even when limited to six diseases and a subset of total indirect costs, results indicate that overweight and obesity are a significant economic burden in Saudi Arabia. Future studies should identify strategies to reduce the health and economic burden resulting from excess weight in Saudi Arabia.
DOI: 10.6084/m9.figshare.24279211.v2
title: Gap-free genome assembly of hybrid poplar "84K"

description: We applied a trio-binning design and Pacific Bioscience High-Fidelity long-read sequencing to obtain haplotype-phased telomere-to-telomere genome assemblies for the two parents of the well-studied F<sub>1</sub> hybrid “84K”, <i>Populus alba</i> × <i>P. tremula</i> var. <i>glandulosa</i>. Almost the entire telomeres and centromeres were assembled for each haplotype subgenome, leaving only two small gaps for one chromosome.
DOI: 10.6084/m9.figshare.5124943.v1
title: Supplementary Material for: Isolated Hand Paresis: A Case Series

description: <b><i>Background:</i></b> Hand knob infarction is a well-known stroke entity. Based on very limited data, embolic stroke mechanism has been considered the most frequent cause; however, prognosis is considered good. We wanted to shed more light on this phenomenon by assessing a cohort of patients referred to a general hospital stroke unit. <b><i>Methods:</i></b> Every subject admitted to our stroke unit with an acute isolated hand paresis in the period from 2007 to 2012 was identified prospectively. Patients who had suffered from a stroke in the hand motor cortex or an adjacent area explaining the acute loss of hand function were included in the study. The Trial of Org 10172 in Acute Stroke Treatment criteria were used to classify subtypes of stroke according to etiology. The patients were followed up during autumn 2012. <b><i>Results:</i></b> Seventeen subjects were admitted, but in 2 of them symptoms were transitory and magnetic resonance imaging was negative. Two patients were excluded due to persisting sensory deficits. The remaining 13 (11 males and 2 females) patients with an average age of 62.9 (±13.4) years were included, representing 1.5% of all ischemic strokes diagnosed at the stroke unit in the given period. All patients were right-handed, and the dominant hand was affected only in 4 (31%). The average Medical Research Council's scale score was 3.1 (±1.4) on admission, and classified as bad. On follow-up, which occurred on average 29.8 (±19.8) months after the stroke, the score was 4.6 (±0.4) and was classified as fair to good. No patient experienced a new stroke. The outcome was good to excellent in 10 patients (77%). Two patients died (15%), 1 of probable cardiac arrest and 1 of unknown cause. One patient did not participate in the follow-up. The majority of patients had evidence of both small artery (77%) and large artery (85%) disease. On average, there were 1.6 (±0.4) new ischemic lesions per patient. Six patients had a solitary lesion (46%). In 5 of them, small artery occlusion was considered the probable stroke mechanism. In 4 cases, the stroke was of undetermined etiology. Three patients had atrial fibrillation, and in 2 of them cardioembolism was the probable stroke mechanism. Two patients with definite large artery atherosclerosis underwent carotid endarterectomy, and 1 of them had comorbid atrial fibrillation. <b><i>Conclusion:</i></b> Strokes causing isolated hand paresis seem to have a heterogeneous etiology. Prognosis regarding hand function is good, but long-term outcome depends on stroke etiology and secondary prophylaxis.
DOI: 10.17632/47xctms897
title: Screening data for "Arrayed multicycle drug screens identify broadly acting chemical inhibitors for repurposing against SARS CoV 2"

description: Here, we present the raw data as readouts from the images of the screening plates. Each .csv represents the raw data from one screening plate. The 'Barcodes.csv' file together with the 'CoV_screen_68plates_ContentList.xls' can be used to identify the treatment conditions of each well and plate.
DOI: 10.17632/vmwfj9hshf
title: Covid Face-Mask Monitoring Dataset

description: During the present time, COVID-19 situation is the topmost priority in our life. We are introducing a new dataset named Covid Face-Mask Monitoring Dataset which is based on Bangladesh perspective. We have a main concern to detect people who are using masks or not in the street. Furthermore, few people are not wearing masks properly which is harmful for other people and we have the intention to detect them also. Our proposed dataset contains 6,550 images and those images collected from the walking street, bus stop, street tea stall, foot-over bridge and so on. Among the full dataset, we selected 5,750 images for training purposes and 800 images for validation purposes. Our selected dimension is 1080 × 720 pixels for entire dataset. The percentage of validation data from the full dataset is almost 12.20%. We used a personal cell phone camera, DSLR for collecting frames and adding them into our final dataset. We have also planned to collect images from the mentioned place using an action camera or CCTV surveillance camera. But, from Bangladesh perspective it is not easy to collect clear and relevant data for research. To extend, CCTV surveillance cameras are mostly used in the university, shopping complex, hospital, school, college where using a mask is mandatory. But our goal of research is different. In addition, we want to mention that in our proposed dataset there are three classes which are 1. Mask, 2. No_mask, 3. Mask_not_in_position.
DOI: 10.6084/m9.figshare.26411209.v2
title: Highreflection and texture-less workpiece dataset(HW6D) for 6D pose estimation

description: This is a selfmade datases used to evaluate the 6D pose estimation network named Swin-AFF for highreflection and texture-less workpieces. In this dataset, flange and connector are metal workpieces with reflective surfaces and symmetrical shapes, while frame and clamp are 3D printed plastic workpieces without texture, varying in sizes and shapes. The Intel RealSense D435i camera was used to collect 8 videos. The actual pose of the target workpiece in each frame was labeled, which produced approximately 6,000 labeled images for each workpiece. The dataset was divided according to LineMOD, and an additional 20,000 synthetic data were added for each object to expand the dataset
DOI: 10.6084/m9.figshare.5110051.v1
title: raw results experiment.xlsx

description: This dataset contains raw data and results from an evaluation of an application. The results are part of my Master thesis at the Vrije Universiteit Amsterdam
DOI: 10.17632/2khxszjkdz
title: Unformatted dataset for monthly electricity consumption with exogenous factors

description: This dataset presents the monthly electricity consumption forecasting dataset on the community level of the city of Dubai from May 2017 – December 2019 that includes exogenous parameters, namely, temperature, population, number of buildings, expat ratio, number of connected customers, and building occupancy.
DOI: 10.6084/m9.figshare.12366257.v1
title: Supplementary Material for: Natural Killer T Cells Are Numerically and Functionally Deficient in Patients with Trauma

description: Natural killer T (NKT) cells rapidly produce Th1 and Th2 cytokines such as interferon-γ (IFN-γ) and interleukin (IL)-4. This study examined the frequency and function of NKT cells in trauma patients. Frequencies, proliferative responses to α-galactosylceramide (α-GalCer), and Th1/Th2 cytokine secretion levels of NKT cells in peripheral blood mononuclear cells from trauma patients and healthy controls (HC) were measured by flow cytometry. Circulating NKT cell levels were significantly reduced in trauma patients. Proliferation and IFN-γ production of circulating NKT cells in response to α-GalCer were markedly decreased in trauma patients. CD69 expression levels produced by NKT cells were significantly upregulated in trauma patients compared to those in HC. In addition, annexin V+ NKT cells were profoundly increased in trauma patients after α-GalCer stimulation. Trauma patients had higher plasma levels of IL-6, IL-8, and TNF-α compared to HC. In particular, the proliferative response of NKT cells to α-GalCer was significantly decreased in the presence of these cytokines. Such decrease was partially recovered after treatment with blocking antibodies against these cytokines. This study demonstrates that circulating NKT cells are numerically deficient and functionally impaired in IFN-γ production in trauma patients. These findings provide an important insight into the trauma-related innate immune response.
DOI: 10.17632/4dwry6rhk4
title: Datasets on a combined rough sets and rule-based expert system to support sandwich pallet loading problem

description: The repository comprises 2 datasets, the first with 709 assembly orders (used in the learning and testing phases), and the second with 20 assembly orders (used in the application phase). In both datasets, the MPA classifier under 3 Strategies is applied, assuming the division of orders into 3 classes: In, Ne, and Re. The classification is based on Strategy 3. The parameters characterising each individual order presented in both files, include the following features: No: – Record ID (-), O_1 – No. of items in order (pcs.), O_2 – Diversity of fragility class (FC) in order (pcs.), O_3 – No. of FC in order (pcs.), O_4 – Wgt. share of products with FC = 0 (-), O_5 – Wgt. share of products with FC = 1 (-), O_6 – Wgt. share of products with FC = 2 (-), O_7 – Wgt. share of products with FC = 3 (-), O_8 – Wgt. share of products with FC = 4 (-), O_9 – Wgt. share of products with FC = 5 (-), O_10 – Quant. share of products with FC = 0 (-), O_11 – Quant. share of products with FC = 1 (-), O_12 – Quant. share of products with FC = 2 (-), O_13 – Quant. share of products with FC = 3 (-), O_14 – Quant. share of products with FC = 4 (-), O_15 – Quant. share of products with FC = 5 (-), O_16 – Quant. share of full-layer products (-), O_17 – Max. hgt. diff. of products with FC = 0 (mm), O_18 – Max. hgt. diff. of products with FC = 1 (mm), O_19 – Max. hgt. diff. of products with FC = 2 (mm), O_20 – Max. hgt. diff. of products with FC = 3 (mm), O_21 – Max. hgt. diff. of products with FC = 4 (mm), O_22 – Max. hgt. diff. of products with FC = 5 (mm), MCP_23 – Max. hgt. of MIX or SKU LU in order (mm); MCP_24 – Max. Wgt. of MIX or SKU LU in order (kg), MCP_25 – Tolerance of hgt. diff. of products on the same layer of MIX (mm), MCP_26 – Lower limit of filling with products the upper layer of MIX/SKU LU (-), MCP_27 – Upper limit of filling with products the upper layer of MIX/SKU LU (-), M_28 – No. of MIX LU built upon order’s parameters (pcs.); M_29 – No. of SKU LU in order (pcs.), M_30 – No. of FULL LU in order (pcs.), M_31 – Hgt. diff. between the highest and the lowest MIX LU in order (mm), M_32 – Hgt. diff. between the highest and the lowest SKU LU in order (mm), M_33 – Hgt. diff. between the highest and the lowest FULL LU in order (mm), M_34 – Wgt. diff. between the heaviest and the lightest MIX LU in order (kg), M_35 – Wgt. diff. between the heaviest and the lightest SKU LU in order (kg), M_36 – Wgt. diff. between the heaviest and the lightest FULL LU in order (kg), M_37 – Quant. share of MIX LU with TOP status (pcs.), M_38 – Quant. share of SKU LU with TOP status (pcs.), SCP_39 – Max. hgt. of SNDW LU in order (mm), SCP_40 – Max. wgt. of SNDW LU in order (kg), S_41 – No. of SNDW LU built upon control parameters in the order (pcs.), MPA_42 – The most probable assignment In, Ne, Re, SU_43 – Suppl. information, i.e., the recommended value of control parameter. Both files are in *.txt formats.
DOI: 10.17632/jwtfv6n4by
title: Gender-sex dot probe task_females_April2022

description: SPSS file of data from 169 participants.  Contains Kinsey score, Feeling thermometer and RTs from dot probe task.
DOI: 10.23645/epacomptox.5588596.v3
title: Archived Distributed Structure-Searchable Toxicity (DSSTox) Data

description: The most updated EPA DSSTox data files are available https://doi.org/10.23645/epacomptox.5588566 . EPA’s Distributed Structure-Searchable Toxicity (DSSTox) database contains curated chemical substances mapped to data including chemical identifiers (i.e., chemical synonyms, systematic names, CAS Registry Numbers and others) and, where appropriate, chemical structure representations. The goal for DSSTox is to accurately represent chemical substances, their structures and identifiers, as well as relevant chemical lists which are important to the environmental research and regulatory community.Science Inventory, CCTE products: https://cfpub.epa.gov/si/si_public_search_results.cfm?advSearch=true&showCriteria=2&keyword=CCTE&TIMSType=&TIMSSubTypeID=&epaNumber=&ombCat=Any&dateBeginPublishedPresented=07/01/2017&dateEndPublishedPresented=&dateBeginUpdated=&dateEndUpdated=&DEID=&personName=&personID=&role=Any&journalName=&journalID=&publisherName=&publisherID=&sortBy=pubDate&count=25
DOI: 10.6084/m9.figshare.23681025.v2
title: Jarvis-CDVAE-supercon

description: Data associated with the manuscript "Inverse Design of Next-Generation Superconductors Using Data-Driven Deep Generative Models" by Daniel Wines, Tian Xie and Kamal Choudhary published in Journal of Physical Chemistry Letters (2023), <em>https://doi.org/10.1021/acs.jpclett.3c01260</em> <br> Files include: <br> jarvis_epc_data_figshare_1058.json.zip (JARVIS superconductor training data from https://www.nature.com/articles/s41524-022-00933-1) <br> all_pred_data.json.zip (CDVAE generated structures) <br> cdvae_plotting.ipynb (plotting scripts for data) <br> CDVAE_relax_DFT.zip (All relaxed DFT structure files) <br> jarvis_epc_data_cdvae.json (DFT electron-phonon coupling results for top candidate superconductors) <br> <br> <br> <br> <br>
DOI: 10.6084/m9.figshare.6865739.v1
title: Graph of biological interactions

description: Dataset is represented in a form of a graph, where edges are biological interactions and the nodes are genes, proteins or probes.<br>Biological interactions include protein-protein interactions (PPI) and co-expression. Node identifiers originating from various databases were mapped to one unique Ensembl name space, i.e every node in the network has identifier starting with ENSG.<br><br>For the data record details see the file Network_of_genes associated_with_Alzheimer's_diseases_Data description.pdf
DOI: 10.17632/ctrjxmzmpn
title: Phonon dispersion measured directly from molecular dynamics simulations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract A method to measure the phonon dispersion of a crystal based on molecular dynamics simulation is proposed and implemented as an extension to an open source classical molecular dynamics simulation code LAMMPS. In the proposed method, the dynamical matrix is constructed by observing the displacements of atoms during molecular dynamics simulation, making use of the fluctuation–dissipation theory. The dynamical matrix can then be employed to compute the phonon spectra by evaluating its eigenvalue... Title of program: FixPhonon, version 1.0 Catalogue Id: AEJB_v1_0 Nature of problem Atoms in solids make ceaseless vibrations about their equilibrium positions, and a collective vibration forms a wave of allowed wavelength and amplitude. The quantum of such lattice vibration is called the phonon, and the so-called "lattice dynamics" is the field of study to find the normal modes of these vibrations. In other words, lattice dynamics examines the relationship between the frequencies of phonons and the wave vectors, i.e., the phonon dispersion. The evaluation of the phonon dispers ... Versions of this program held in the CPC repository in Mendeley Data AEJB_v1_0; FixPhonon, version 1.0; 10.1016/j.cpc.2011.04.019
DOI: 10.6084/m9.figshare.16680676.v1
title: SSR original data.xlsx

description: SSR data