cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9981728
title: Ant activity (walking or stopping)

description: <b>Are the ants are walking or stoping?</b><b>column 1: </b>id of the experiment<b>column 2</b>: time (s)<b>column 3</b>: walking (1) or stopping (0)<br><b></b>
DOI: 10.6084/m9.figshare.9981701
title: CompiledMaster_N478_Recoded_MissingData.sav

description: This data set was used to show the impact of website characteristics on nonprofits
DOI: 10.6084/m9.figshare.9981701.v1
title: CompiledMaster_N478_Recoded_MissingData.sav

description: This data set was used to show the impact of website characteristics on nonprofits
DOI: 10.6084/m9.figshare.9981314.v1
title: Data of the study "A method to assess spatio-temporal units for specific tasks based on explainable artificial intelligence"

description: Data (numbered one to four) are saved as the byte format and can be read by the pickle library of python.1. The file "holiday_2_test_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the test set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).2. The file "holiday_2_train_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the training set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).3. The file "holiday_2_test_2017" is the organized taxi origin point distribution dataset collected in three months (from January to March) of 2017. This dataset is used as the test set. Each input data are labeled by the temporal information (weekday or weekend/holiday). 4. The file "totalmean" is the mean value distribution (30*30*48) of the taxi origin point volume. This dataset is used as the input data of the clustering experiment.5. The file "POIStatistics.csv" is the contribution value difference and POI counts of units. This dataset is used as the input data of the regression experiment.<br>
DOI: 10.6084/m9.figshare.9981314.v2
title: Data of the study "A method to assess spatio-temporal units for specific tasks based on explainable artificial intelligence"

description: Data (numbered one to four) are saved as the byte format and can be read by the pickle library of python.1. The file "holiday_2_test_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the validation set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).2. The file "holiday_2_train_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the training set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).3. The file "holiday_2_test_2017" is the organized taxi origin point distribution dataset collected in three months (from January to March) of 2017. This dataset is used as the test set. Each input data are labeled by the temporal information (weekday or weekend/holiday). 4. The file "totalmean" is the mean value distribution (30*30*48) of the taxi origin point volume. This dataset is used as the input data of the clustering experiment.5. The file "POIStatistics.csv" is the contribution value difference and POI counts of units. This dataset is used as the input data of the regression experiment.<br>
DOI: 10.6084/m9.figshare.9981314.v3
title: Data of the study "A method to assess spatio-temporal units for specific tasks based on explainable artificial intelligence"

description: Data (numbered one to four) are saved as the byte format and can be read by the pickle library of python.1. The file "holiday_2_test_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the validation set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).2. The file "holiday_2_train_2016" is the organized taxi origin point distribution dataset collected in the whole year of 2016. This dataset is used as the training set of model training. Each input data are labeled by the temporal information (weekday or weekend/holiday).3. The file "holiday_2_test_2017" is the organized taxi origin point distribution dataset collected in three months (from January to March) of 2017. This dataset is used as the test set. Each input data are labeled by the temporal information (weekday or weekend/holiday). 4. The file "totalmean" is the mean value distribution (30*30*48) of the taxi origin point volume. This dataset is used as the input data of the clustering experiment.5. The file "POIStatistics.csv" is the contribution value difference and POI counts of units. This dataset is used as the input data of the regression experiment.<br>
DOI: 10.6073/pasta/a7920fa7a13a6c47827ed453a227e01c
title: High-Frequency Water Temperature Data at Lake Lillinonah, Connecticut, USA, 2011-2015

description: Since 2011, an instrumented buoy maintained by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University has been deployed on Lake Lillinonah (Connecticut, USA) during the summer months to collect high-frequency water quality data. The buoy is deployed early each summer and remains in the lake until late October. From 2011-2015, the instrumented buoy was equipped with a Nexsens thermistor chain, collecting data every meter from 0.1 to 12 meters and every other meter from 12 to 18 meters. Data were collected every fifteen minutes. Included in this data package are datasets containing 15-minute data as well as daily averages. Following the summer of 2015, the buoy was equipped with an RBR thermistor chain with sensors at different depths. Available data from the RBR thermistor chain (beginning in 2018) can be found in EDI package 558. Additional high-frequency water quality data for Lake Lillinonah including dissolved oxygen, specific conductance and pigment fluorescence are available in packages EDI559 and EDI560.
DOI: 10.6084/m9.figshare.9981005
title: Supplementary Material for: In vivo Tracking of DNA for Precise Determination of the Stratum Corneum Thickness and Superficial Microbiome Using Confocal Raman Microscopy

description: The skin barrier function is mostly provided by the stratum corneum (SC), the uppermost layer of the epidermis. To noninvasively analyze the physiological properties of the skin barrier function<i></i>in vivo, it is important to determine the SC thickness. Confocal Raman microscopy (CRM) is widely used for this task. In the present in vivo study, a new method based on the determination of the DNA concentration profile using CRM is introduced for determining the SC thickness. The obtained SC thickness values are compared with those obtained using other CRM-based methods determining the water and lipid depth profiles. The obtained results show almost no significant differences in SC thickness for the utilized methods. Therefore, the results indicate that it is possible to calculate the SC thickness by using the DNA profile in the fingerprint region, which is comparable with the SC thickness calculated by the water depth profiles (ANOVA test <i>p</i> = 0.77) and the lipid depth profile (ANOVA test <i>p</i> = 0.74). This provides the possibility to measure the SC thickness by using the DNA profile, in case the water or lipid profile analyses are influenced by a topically applied formulation. The increase in DNA concentration in the superficial SC (0–2 µm) is related to the DNA presence in the microbiome of the skin, which was not present in the SC depth below 4 µm.
DOI: 10.6084/m9.figshare.9981005.v1
title: Supplementary Material for: In vivo Tracking of DNA for Precise Determination of the Stratum Corneum Thickness and Superficial Microbiome Using Confocal Raman Microscopy

description: The skin barrier function is mostly provided by the stratum corneum (SC), the uppermost layer of the epidermis. To noninvasively analyze the physiological properties of the skin barrier function<i></i>in vivo, it is important to determine the SC thickness. Confocal Raman microscopy (CRM) is widely used for this task. In the present in vivo study, a new method based on the determination of the DNA concentration profile using CRM is introduced for determining the SC thickness. The obtained SC thickness values are compared with those obtained using other CRM-based methods determining the water and lipid depth profiles. The obtained results show almost no significant differences in SC thickness for the utilized methods. Therefore, the results indicate that it is possible to calculate the SC thickness by using the DNA profile in the fingerprint region, which is comparable with the SC thickness calculated by the water depth profiles (ANOVA test <i>p</i> = 0.77) and the lipid depth profile (ANOVA test <i>p</i> = 0.74). This provides the possibility to measure the SC thickness by using the DNA profile, in case the water or lipid profile analyses are influenced by a topically applied formulation. The increase in DNA concentration in the superficial SC (0–2 µm) is related to the DNA presence in the microbiome of the skin, which was not present in the SC depth below 4 µm.
DOI: 10.6084/m9.figshare.9980954
title: DataS1. Caspian Sea environmental variables: an extension of the Bio-ORACLE ocean data set (in press)

description: Paper in pressThe Caspian Sea hosts unique native and endemic faunas. However, it is also source and sink of invasive alien species (IAS) with some listed among the worst 100 invasive species by the IUCN. A common approach to study biodiversity and biogeographic patterns or to predict the invasive potential of species is the application of ecological niche models and species distribution models. These are statistical methods using spatially gridded environmental data and species occurrence information. As the Caspian Sea is not connected to the world oceans, spatially gridded environmental data for the Caspian Sea are not available in the widely used Bio-ORACLE marine data set. To address this issue, we compiled 28 ecologically relevant spatially gridded environmental variables using Kriging interpolation of point data to model minimum, maximum, mean and range of temperature, salinity and dissolved oxygen for the surface and benthic zones of the Caspian Sea. Data were retrieved from the World Ocean Dataset. Additionally, we utilized raster statistics to create surface layers of maximum, mean, minimum and range of chlorophyll <i>a</i> from remotely sensed data. We developed these environmental variables as they were previously confirmed to be relevant for the biogeographical classification of the Caspian Sea. To allow projections of models across the world oceans into the Caspian Sea (and vice versa), we matched our raster dimensions with those of the Bio-ORACLE data set. Our extension of the Bio-ORACLE data set with data from the Caspian Sea provides an important basis for the monitoring and evaluation of suitable habitats for native species as well as predicting the invasive potential of Caspian Sea species into the World oceans. <b>Keywords</b>: Sea surface temperature, salinity, oxygen, Chlorophyll <i>a</i>, ecological modelling, invasive alien species
DOI: 10.6084/m9.figshare.9980705
title: Supplementary Material for: miR-29a Regulates the Proliferation and Migration of Human Arterial Smooth Muscle Cells in Arteriosclerosis Obliterans of the Lower Extremities

description: <b><i>Background:</i></b> The molecular mechanisms underlying the contribution of human arterial smooth muscle cells (HASMCs), one of the most important components of the arterial wall, to the pathogenesis of arteriosclerosis obliterans (ASO) remain elusive. <b><i>Methods:</i></b> The expression levels of miR-29a in arterial walls were analyzed via real-time-polymerase chain reaction. An ASO cell model was established to investigate the expression of miR-29a on HASMCs. The interaction between miR-29a and platelet-derived growth factor receptor B (PDGFRB) was detected by luciferase reporter assay, and the alteration of the expression of PDGFRB was determined in platelet-derived growth factor‑BB (PDGF-BB)-stimulated HASMCs transfected with miR-NC, miR-29a mimics, and miR-29a inhibitors. Further, HASMCs cell proliferation was investigated by cell counting kit-8 and EdU assays, and cell migrations were evaluated by Transwell and wound closure assays. <b><i>Results:</i></b> The expression of miR-29a was remarkably downregulated in the arterial walls of ASO patients compared with normal arterial walls. Furthermore, expression of miR-29a in HASMCs under PDGF-BB stimulation was lower than vehicle control. PDGFRB was identified as a target of miR-29a in HASMCs, and miR-29a inhibited the proliferation and migration in PDGF-BB-induced HASMCs, via regulating the expression of PDGFRB. <b><i>Conclusion:</i></b> This study showed that miR-29a is downregulated in the arterial wall of ASO patients, as well as in the PDGF-BB-stimulated HASMCs. This alteration of miR-29a could upregulate target genes PDGFRB and inhibits the proliferation and migration of HASMCs. These findings discovered new mechanisms of ASO pathogenesis, and the miR-29a/PDGFRB axis could serve as potential therapy target of ASO.
DOI: 10.6073/pasta/0d7092839a42acf75c60be35cba989a4
title: High-Frequency Water Temperature Data at Lake Lillinonah, Connecticut, USA, 2018-current

description: An instrumented buoy maintained by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University has been deployed on Lake Lillinonah (Connecticut, USA) during the summer months to collect high-frequency water quality data. The buoy is deployed early each summer and remains in the lake until late October. The instrumented buoy is equipped with an RBR temperature sensor chain, collected data every meter from a depth of 0.6 meters to 14.5 meters and every two meters to a depth of 18.5. meters. Data was collected every fifteen minutes. Included in this data package are data sets containing 15-minute data as well as daily averages. Prior to the deployment of the RBR temperature sensor, the instrumented buoy was equipped with a Nexsens T-node thermistor chain (2011-2015) with sensors at different depths. These data are available in the data package EDI557. Additional high-frequency water quality data for Lake Lillinonah including dissolved oxygen, specific conductance and pigment fluorescence are available in packages EDI559 and EDI560.
DOI: 10.34740/kaggle/dsv/1443741
title: Audio Forensics
DOI: 10.6073/pasta/f038bf2526bad7c1d91d53f74a6e7ce7
title: High-frequency water quality data for water temperature, dissolved oxygen, specific conductivity, pH, phycocyanin fluorescence and chlorophyll a fluorescence at Lake Lillinonah, Connecticut, USA, 2011-2017.

description: From 2011 to 2017, an instrumented buoy maintained by Friends of the Lake (FOTL, friendsofthelake.org) and Fairfield University was deployed on Lake Lillinonah (Connecticut, USA) during the summer months to collect high-frequency water quality data. The buoy was deployed early each summer and remained in the lake until late October. The instrumented buoy was equipped with a YSI 6600 sonde at a depth of 1 meter. The YSI 6600 collected water temperature, dissolved oxygen, specific conductivity, pH, chlorophyll a fluorescence and phycocyanin fluorescence data. Additionally, the instrumented buoy is equipped with an In-Situ RDO sensor which collects water temperature and dissolved oxygen readings at a depth of 15 meters. Included in this data package are datasets containing 15-minute data as well as daily averages from all sensors. Following the summer of 2017, the YSI 6600 sonde was replaced with a YSI EXO2 sonde which collected data on the same variables. Data from the YSIEXO2 sonde, as well as data from the In-Situ RDO sensor during the same period, are available in the EDI data package EDI560. Additionally, the instrumented buoy at Lake Lillinonah is equipped with a water temperature thermistor chain . These data can be found in data packages EDI557 (2011-2015) and EDI558 (2018-current).
DOI: 10.15139/s3/s2dulx
title: Data for RICHS Seasonally variant gene expression in full‐term human placenta

description: Seasonal exposures influence human health and development. The placenta, as a mediator of the maternal and fetal systems and a regulator of development, is an ideal tissue to understand the biological pathways underlying relationships between season of birth and later life health outcomes. Here, we conducted a differential expression (DE) analysis of season of birth in full‐term human placental tissue to evaluate whether the placenta may be influenced by seasonal cues. Of the analyzed transcripts, 583 displayed DE between summer and winter births (False Discovery Rate [FDR] q .05); among these, BHLHE40, MIR210HG, and HILPDA had increased expression among winter births (Bonferroni P .05). Enrichment analyses of the seasonally variant genes between summer and winter births indicated overrepresentation of transcription factors HIF1A, VDR, and CLOCK, among others, and of GO term pathways related to ribosomal activity and infection. Additionally, a cosinor analysis found rhythmic expression for approximately 11.9% of all 17 664 analyzed placental transcripts. These results suggest that the placenta responds to seasonal cues and add to the growing body of evidence that the placenta acts as a peripheral clock, which may provide a molecular explanation for the extensive associations between season of birth and health outcomes.
DOI: 10.15468/byeuvb
title: Diverse mechanisms of feeding and movement in Cyclorrhaphan larvae (Diptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rotheray, Graham, Lyszkowski, Richard (2015): Diverse mechanisms of feeding and movement in Cyclorrhaphan larvae (Diptera). Journal of Natural History 49 (35): 2139-2211, DOI: 10.1080/00222933.2015.1010314
DOI: 10.6084/m9.figshare.9980705.v1
title: Supplementary Material for: miR-29a Regulates the Proliferation and Migration of Human Arterial Smooth Muscle Cells in Arteriosclerosis Obliterans of the Lower Extremities

description: <b><i>Background:</i></b> The molecular mechanisms underlying the contribution of human arterial smooth muscle cells (HASMCs), one of the most important components of the arterial wall, to the pathogenesis of arteriosclerosis obliterans (ASO) remain elusive. <b><i>Methods:</i></b> The expression levels of miR-29a in arterial walls were analyzed via real-time-polymerase chain reaction. An ASO cell model was established to investigate the expression of miR-29a on HASMCs. The interaction between miR-29a and platelet-derived growth factor receptor B (PDGFRB) was detected by luciferase reporter assay, and the alteration of the expression of PDGFRB was determined in platelet-derived growth factor‑BB (PDGF-BB)-stimulated HASMCs transfected with miR-NC, miR-29a mimics, and miR-29a inhibitors. Further, HASMCs cell proliferation was investigated by cell counting kit-8 and EdU assays, and cell migrations were evaluated by Transwell and wound closure assays. <b><i>Results:</i></b> The expression of miR-29a was remarkably downregulated in the arterial walls of ASO patients compared with normal arterial walls. Furthermore, expression of miR-29a in HASMCs under PDGF-BB stimulation was lower than vehicle control. PDGFRB was identified as a target of miR-29a in HASMCs, and miR-29a inhibited the proliferation and migration in PDGF-BB-induced HASMCs, via regulating the expression of PDGFRB. <b><i>Conclusion:</i></b> This study showed that miR-29a is downregulated in the arterial wall of ASO patients, as well as in the PDGF-BB-stimulated HASMCs. This alteration of miR-29a could upregulate target genes PDGFRB and inhibits the proliferation and migration of HASMCs. These findings discovered new mechanisms of ASO pathogenesis, and the miR-29a/PDGFRB axis could serve as potential therapy target of ASO.
DOI: 10.6084/m9.figshare.9980657
title: Suppl data 1-4 of Sde-Eliezer and Nachal Mor Sites

description: Monitoring radon and CO<sub>2</sub> at a depth of several tens of meters along the Dead Sea Fault Zone between the Dead Sea and the Hula Valley, Israel.
DOI: 10.6084/m9.figshare.9980672
title: Testing of Mobile Applications in the Wild: A Large-Scale Empirical Study on Android Apps

description: Nowadays, mobile applications (a.k.a., apps) are used by over two billion users for every type of need, including social and emergency connectivity. Their pervasiveness in today world has inspired the software testing research community in devising approaches to allow developers to better test their apps and improve the quality of the tests being developed. In spite of this research effort, we still notice a lack of empirical analyses aiming at assessing the actual quality of test cases manually developed by mobile developers: this perspective could provide evidence-based findings on the future research directions in the field as well as on the current status of testing in the wild. As such, we performed a large-scale empirical study targeting 1,780 open-source Android apps and aiming at assessing (1) the extent to which these apps are actually tested, (2) how well-designed are the available tests, and (3) what is their effectiveness. The key results of our study show that mobile developers still tend not to properly test their apps, possibly because of time to market requirements. Furthermore, we discovered that the test cases of the considered apps have a low (i) design quality, both in terms of test code metrics and test smells, and (ii) effectiveness when considering code coverage as well as assertion density.
DOI: 10.6084/m9.figshare.9980657.v1
title: Suppl data 1-4 of Sde-Eliezer and Nachal Mor Sites

description: Monitoring radon and CO<sub>2</sub> at a depth of several tens of meters along the Dead Sea Fault Zone between the Dead Sea and the Hula Valley, Israel.
DOI: 10.6084/m9.figshare.9980630
title: RuBisCO tree (including Form I')

description: Fasta file and maximum likelihood tree of trimmed, aligned RuBisCo sequences (including Form I'). Sequences are taken from metagenomic assemblies and are representative across all Forms of RuBisCO.
DOI: 10.6084/m9.figshare.9980642
title: Supplementary Material for: Efficacy and Safety of Two Fosfomycin Regimens as Antimicrobial Prophylaxis for Transrectal Prostate Biopsy: A Randomised Study

description: <b><i>Purpose:</i></b> Prostate biopsy is the gold standard for prostate cancer diagnosis; unfortunately, this procedure is not free from complications. Recent studies have shown an increase in antibiotic resistance. The aim of our prospective randomized study was to evaluate the efficacy and safety of a prostate biopsy prophylaxis protocol using 2 vs. 3 fosfomycin doses. <b><i>Methods:</i></b> Two hundred and ninety-seven patients undergoing transrectal systematic ultrasound (US)-guided (<i>n</i> = 277) or transrectal fusion prostate biopsy (<i>n</i> = 20) were prospectively evaluated and randomized by date of birth, to receive 2 (even years, group A) versus 3 doses of fosfomycin (odd years, group B), and prospectively evaluated. <b><i>Results:</i></b>Two hundred and ninety-seven patients were randomized to group A (<i>n</i> = 162) or group B (<i>n</i> = 135). The 2 groups were comparable with respect to age, comorbidity, PSA value, prostate volume, operative time and urine culture results. Out of 297 patients, 44 (14.8%) developed complications after the procedure; 2.7% (8/297) of patients developed fever &gt;38° requiring hospitalization (6 [3.7%] in group A and 2 [1.5%] in group B, <i>p</i> = 0.29). Patients who underwent fusion biopsy were more frequently readmitted in comparison with patients undergoing US-guided prostate biopsy (<i>p</i> = 0.000). <b><i>Conclusion:</i></b> The low fever and prostatitis rate suggest that fosfomycin prophylaxis is safe and efficient. There is no significant difference in clinical outcome between the 2 dosage regimens.