cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fz6hap
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asperarca ectocomata"
 ]
}

 The dataset includes 14 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064239-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16617994
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 1 of data set (HTT-HAP40 and HL2)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.16617993
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 1 of data set (HTT-HAP40 and HL2)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.15468/dl.t5vsyh
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa meliana"
 ]
}

 The dataset includes 126 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064240-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16616310
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 2 of data set (HD4)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.5281/zenodo.16616311
title: Huntingtin (HTT) targeting macrocyclic peptides: Hydrogen-Deuterium Exchange Mass Spectrometry (HDX-MS) - Part 2 of data set (HD4)

description: Differential Hydrogen-Deuterium eXchange Mass Spectrometry (ΔHDX-MS) was performed to determine the binding sites of 5 macrocycles (HL2, HL5, HD4, HHL1, HHD3) targeting Huntingtin (HTT) and HTT-HAP40 complex. To do so, HDX-MS was performed at 0, 0.5, 5, 30 mins using the Waters Select Series Cyclic IMS-MS in HDMSe mode coupled to robotic tool change liquid handling (PAL3, Trajan/LEAP) and ACQUITY UPLC M-Class System with HDX Technology (Waters). HDX labeling was performed using 10 mM Phosphate Buffer pD 7.5, 150 mM NaCl and quenched using 7.5 M Guanidine-HCl, 0.5 M TCEP, 100 mM Phosphate Buffer pH 2.5 at 0 °C for 2 min. These samples were diluted 1:1 with 100 mM Phosphate Buffer, pH 2.5 prior to injection, on-column digestion with 1:1 Nepenthesin 2-Pepsin (Affipro), desalting, and reverse-phase separation. Peptide deuterium uptake was analyzed using DynamX after peptide ID was performed using PLGS. The MS files deposited are in Waters .raw format.
DOI: 10.6084/m9.figshare.30918188
title: Endogenous oxalate synthesis in mouse models of metabolic dysfunction-associated steatotic liver disease- Data Set

description: The study investigates the effect of diet induced obesity and metabolic dysfunction associated steatotic liver disease induced by a Western diet model on the endogenous synthesis of oxalate in adult male mice. 24-hr Urinary oxalate and glycolate, the activity of the liver enzymes alanine:glyoxylate aminotransferase (AGT), D-glycerate dehydrogenase (DGDH, an accurate index of glyoxylate reductase/hydroxypyruvate reductase or GRHPR), glycolate oxidase (GO), lactate dehydrogenase (LDH), 4-Hydroxy-2-oxoglutarate aldolase (HOGA) were measured. Liver content of oxalate and glyoxylate and kidney oxalate content were measured. Scoring of liver pathology was done using the NAFLD Fibrosis score. C57BL/6J mice fed the high fat diet (60% kcal from fat) reached a mild MASLD stage, C57BL/6N fed the Western Diet (40% kcal from fat, 20% kcal from fructose, 2% cholesterol) reached the moderate MASLD stage. Mice were also administered the endogenous glyoxylate precursor, hydroxyproline intra-peritoneally and urinary excretions monitored after. Urinary oxalate excretion was increased in both groups vs the respective controls, and more so after the hydroxyproline challenge in the Western diet-fed mice group. The activity of liver enzymes involved in glyoxylate metabolism and oxalate synthesis were affected by MASLD indicating greater endogenous oxalate synthesis. The study supports the hypothesis that endogenous oxalate synthesis increases wity the severity of of MALSD in these models. <br>
DOI: 10.6084/m9.figshare.30918188.v2
title: Endogenous oxalate synthesis in mouse models of metabolic dysfunction-associated steatotic liver disease- Data Set

description: The study investigates the effect of diet induced obesity and metabolic dysfunction associated steatotic liver disease induced by a Western diet model on the endogenous synthesis of oxalate in adult male mice. 24-hr Urinary oxalate and glycolate, the activity of the liver enzymes alanine:glyoxylate aminotransferase (AGT), D-glycerate dehydrogenase (DGDH, an accurate index of glyoxylate reductase/hydroxypyruvate reductase or GRHPR), glycolate oxidase (GO), lactate dehydrogenase (LDH), 4-Hydroxy-2-oxoglutarate aldolase (HOGA) were measured. Liver content of oxalate and glyoxylate and kidney oxalate content were measured. Scoring of liver pathology was done using the NAFLD Fibrosis score. C57BL/6J mice fed the high fat diet (60% kcal from fat) reached a mild MASLD stage, C57BL/6N fed the Western Diet (40% kcal from fat, 20% kcal from fructose, 2% cholesterol) reached the moderate MASLD stage. Mice were also administered the endogenous glyoxylate precursor, hydroxyproline intra-peritoneally and urinary excretions monitored after. Urinary oxalate excretion was increased in both groups vs the respective controls, and more so after the hydroxyproline challenge in the Western diet-fed mice group. The activity of liver enzymes involved in glyoxylate metabolism and oxalate synthesis were affected by MASLD indicating greater endogenous oxalate synthesis. The study supports the hypothesis that endogenous oxalate synthesis increases wity the severity of of MALSD in these models. <br>
DOI: 10.6084/m9.figshare.30918188.v1
title: Endogenous oxalate synthesis in mouse models of metabolic dysfunction-associated steatotic liver disease- Data Set

description: The study investigates the effect of diet induced obesity and metabolic dysfunction associated steatotic liver disease induced by a Western diet model on the endogenous synthesis of oxalate in adult male mice. 24-hr Urinary oxalate and glycolate, the activity of the liver enzymes alanine:glyoxylate aminotransferase (AGT), D-glycerate dehydrogenase (DGDH, an accurate index of glyoxylate reductase/hydroxypyruvate reductase or GRHPR), glycolate oxidase (GO), lactate dehydrogenase (LDH), 4-Hydroxy-2-oxoglutarate aldolase (HOGA) were measured. Liver content of oxalate and glyoxylate and kidney oxalate content were measured. Scoring of liver pathology was done using the NAFLD Fibrosis score. C57BL/6J mice fed the high fat diet (60% kcal from fat) reached a mild MASLD stage, C57BL/6N fed the Western Diet (40% kcal from fat, 20% kcal from fructose, 2% cholesterol) reached the moderate MASLD stage. Mice were also administered the endogenous glyoxylate precursor, hydroxyproline intra-peritoneally and urinary excretions monitored after. Urinary oxalate excretion was increased in both groups vs the respective controls, and more so after the hydroxyproline challenge in the Western diet-fed mice group. The activity of liver enzymes involved in glyoxylate metabolism and oxalate synthesis were affected by MASLD indicating greater endogenous oxalate synthesis. The study supports the hypothesis that endogenous oxalate synthesis increases wity the severity of of MALSD in these models. <br>
DOI: 10.15468/dl.teqaf5
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asperarca ectocomata"
 ]
}

 The dataset includes 14 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064242-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8vuxku
title: Occurrence Download

description: A dataset containing 575299 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-10-28",
 "EventDate is less than or equal to 2025-11-27",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 575299 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064237-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.33125.46561
title: mixture 5d moderate
DOI: 10.13140/rg.2.2.16348.24963
title: mixture 2d moderate
DOI: 10.34740/kaggle/dsv/14273135
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18039381
title: Sunday Observance In Late Antiquity (SOLA)
DOI: 10.5281/zenodo.18039382
title: Sunday Observance In Late Antiquity (SOLA)
DOI: 10.15468/dl.3ejk24
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa minutula"
 ]
}

 The dataset includes 118 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064244-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/14272939
title: NASA Battery Degradation Dataset (Cycle-Level CSV)
DOI: 10.5281/zenodo.18033423
title: Doppler lidar validation data for Erdmann and Gasch: A modular wind profile retrieval software for heterogeneous Doppler lidar measurements

description: Radiosonde and Doppler lidar wind profiles from Payerne, Villingen-Schwenningen, and Neumayer Station.
DOI: 10.15468/dl.cv8re6
title: Occurrence Download

description: A dataset containing 439515 species occurrences available in GBIF matching the query:
{
 "CollectionKey" : [
 "is a421a197-9584-4564-9d59-767d61a52a0c"
 ]
}

 The dataset includes 439515 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064241-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vqbqk
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa mombachoensis"
 ]
}

 The dataset includes 73 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064245-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/jndhcq
title: DFO Arctic Region Biodiversity of the Benthic Epifauna Trawl Survey from CBS-MEA program (2021-2024)

description: This resource documents a dataset of epifauna occurrences collected from 2021 to 2024 during the Canadian Beaufort Sea Marine Ecosystem Assessment (CBS-MEA) conducted by the Department of Fisheries and Oceans (DFO). This scientific program focuses on the integration of oceanography, food web linkages, physical-biological couplings, and spatial and interannual variabilities. The program also aims to expand the baseline coverage of species diversity, abundances, and habitat associations in previously unstudied areas of the Beaufort Sea and Western Canadian Archipelago. Epibenthic invertebrates were identified from catches collected with both a 3 m benthic beam trawl and an Atlantic Western IIA otter trawl. // Cette ressource documente un jeu de données sur les occurrences d'épifaune collectées de 2021 à 2024 lors de l'évaluation environnementale marine de la mer de Beaufort canadienne (CBS-MEA) menée par Pêches et Océans Canada (MPO). Le programme CBS-MEA se concentre sur l'intégration de l'océanographie, des liens dans le réseau alimentaire, des couplages physico-biologiques et des variabilités spatiales et interannuelles. Le programme vise également à élargir la couverture de référence de la diversité des espèces, des abondances et des associations avec les habitats dans des zones de la mer de Beaufort et de l'archipel canadien de l'Ouest précédemment non étudiées. Les invertébrés épibenthiques ont été identifiés à la fois à partir des prises collectées par un chalut à perche benthique de 3 m et aussi par un chalut à panneaux Atlantic Western IIA.
DOI: 10.26008/1912/bco-dmo.913620.1
title: Chemotaxis of Pseudoalteromonas haloplanktis towards exudates of phage-infected and control Synechoccocus (VIC project)

description: This data set summarises the chemotactic response of a model marine bacteria (Pseudoalteromonas haloplanktis  ATCC 700530) to filtered exudates of the cyanobacteria Synechococcus sp WH8102. Two filtrate sets were collected, each spanning 6 time points (named T1 -> T6), with the initial assays split into 4 biological replicates (named A,B,C,D). 

The two treatments were:

1) A control treatment (named "Control", or shortened to "C")

2) A phage-infected treatment (named "Phage", or shortened to "P"), where host Synechococcus were infected with the T-4 like Myovirus S-SSM5, with data collected over the pre-lysis cycle.

These treatments are fully described in: https://doi.org/10.1038/s43705-022-00169-6.


At both time points, statistically significant preference was measured towards the phage-infected exudates by analyzing the cell distribution across a microfluidic channel.
DOI: 10.13140/rg.2.2.23059.13607
title: Hepatectomy | Different kinds of Liver Resection
DOI: 10.15468/dl.vken6c
title: Occurrence Download

description: A dataset containing 1086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Laticauda colubrina",
 "Year 1998-2025"
 ]
}

 The dataset includes 1086 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064247-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26008/1912/bco-dmo.913619.1
title: Chemotaxis of Vibrio alginolyticus towards live phage-infected/control Synechococcus cells (VIC project)

description: This data set summarises the chemotactic response of model heterotrophic bacteria, Vibrio alginolyticus towards phage-infected cyanobacteria Synechococcus cells/exudates respectively. Phage treatments are fully described in: https://doi.org/10.1038/s43705-022-00169-6.

Six microfluidic experiments were conducted each on different days: three with phage infection and three control, uninfected experiments. Both uninfected and phage-infected experiments were performed identically, with the substitution of phage addition for an equivalent volume of SN media in the uninfected experiments. All infection experiments were performed within a week using the same phage stock, with Synechococcus WH8102 as the host. Non-motile host cells were loaded into a microfluidic chamber with the model heterotrophic bacteria V. alginolyticus. 

Analysis of the cell spatial distribution over time revealed a strong sustained accumulation of chemotactic bacteria towards phage-infected cyanobacteria, and no measurable accumulation in the control condition. This provides the first direct experimental evidence of chemotaxis of heterotrophic bacteria towards cyanobacteria.
DOI: 10.5517/ccdc.csd.cc2qhj2v
title: CCDC 2517357: Experimental Crystal Structure Determination

description: Related Article: Dong-En Wu|2025|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.26008/1912/bco-dmo.907823.1
title: Lagrangian Structure and Stretching in Bacterial Turbulence Modeling Results from February 2020 (VIC project)

description: Dense suspensions of active, self-propelled agents spontaneously exhibt large-scale, chaotic flow structures. Descriptions of their dynamics have predominately focused on characterization of spatiotemporal correlation of the velocity field, but their transport and mixing properties remain largely unknown. In this work, we use Lagrangian analysis techniques to study the chaotic flow field generated by "bacterial turbulence" in dense suspensions of Bacillus subtilis. High-resolution velocity fields are simultaneously measured along with individual tracer and cell trajectories across a range of bacterial swimming speeds. The flow kinematics are quantified through the Lagrangian stretching field and used to characterize the mixing induced by the stretching and folding of the active bacterial colony. The distribution of the finite-time Lyapunov exponent (FTLE) field reveals swimming-speed dependent transitions reminiscent of intermittent dynamics in classical chaotic dynamical systems. Finally, measured trajectories of both passive beads and individual swimming cells directly demonstrate how the striking active Lagrangian flow structures regulate transport in bacterial turbulence.
DOI: 10.15468/dl.mjmh3t
title: Occurrence Download

description: A dataset containing 892 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bolitoglossa morio"
 ]
}

 The dataset includes 892 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064249-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.28370.82880
title: 2024 ACI Reviewers List
DOI: 10.15468/dl.75zpfd
title: Occurrence Download

description: A dataset containing 128787 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2025-11-28",
 "EventDate is less than or equal to 2025-12-28",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 },
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 128787 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064243-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zrc5nv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((136.28509 -14.19218,159.71491 -14.19218,159.71491 -4.80782,136.28509 -4.80782,136.28509 -14.19218))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Laticauda guineai",
 "Year 1999-2017"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064250-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92vnxx
title: Occurrence Download

description: A dataset containing 639 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((78.67926 -30.66295,209.32074 -30.66295,209.32074 21.66295,78.67926 21.66295,78.67926 -30.66295))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Laticauda saintgironsi",
 "Year 1999-2025"
 ]
}

 The dataset includes 639 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0064251-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.