cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14535519
title: Supplementary Material for: Protective Effects of 1,25 Dihydroxyvitamin D<sub>3</sub> against High-Glucose-Induced Damage in Human Umbilical Vein Endothelial Cells Involve Activation of Nrf2 Antioxidant Signaling

description: <b><i>Aim:</i></b> To explore the protective effects and related mech­anisms of 1,25 dihydroxyvitamin D<sub>3</sub> (1,25(OH)<sub>2</sub>D<sub>3</sub>) on en­dothelial dysfunction under hyperglycemic conditions. <b><i>Methods:</i></b> Cultured human umbilical vein endothelial cells (HUVECs) were treated with normal glucose (glucose concentration of 5.5 mmol/L), high glucose (glucose concentration of 33 mmol/L), and high glucose plus 1,25(OH)<sub>2</sub>D<sub>3</sub>, respectively. Cell viability and apoptosis, intracellular reactive oxygen species (ROS) and nitric oxide (NO) contents, antioxidant enzyme activities, proinflammatory cytokine mRNA levels, and expression levels of proteins involved were measured. <b><i>Results:</i></b> High glucose decreased HUVEC viability, promoted ROS production and apoptosis, and reduced NO generation, which was associated with decreased activities of antioxidant enzymes and increased levels of proinflam­matory cytokines. 1,25(OH)<sub>2</sub>D<sub>3</sub> treatment enhanced HUVEC viability, attenuated ROS generation and apoptosis, and ­increased NO production, which was accompanied by ­enhanced antioxidant enzyme activities and reduced ­proinflammatory factors. Mechanically, 1,25(OH)<sub>2</sub>D<sub>3</sub> promoted nuclear translocation of nuclear factor erythroid 2-related factor 2 (Nrf2) in a vitamin D receptor (VDR)-dependent manner, and Nrf2 siRNA abolished the antioxidative and ­anti-inflammatory effects of 1,25(OH)<sub>2</sub>D<sub>3</sub>. <b><i>Conclusions:</i></b> 1,25(OH)<sub>2</sub>D<sub>3</sub> attenuates high-glucose-induced endothelial oxidative injury through upregulation of the Nrf2 antioxidant pathway in a VDR-dependent manner.
DOI: 10.6084/m9.figshare.14535471
title: Supplementary Material for: Associations of Stylet Use during Neonatal Intubation with Intubation Success, Adverse Events, and Severe Desaturation: A Report from NEAR4NEOS

description: <b><i>Introduction:</i></b> Intubations are frequently performed procedures in neonatal intensive care units (NICU) and delivery rooms (DR). Unsuccessful first attempts are common as are tracheal intubation-associated events (TIAEs) and severe desaturations. Stylets are often used during intubation, but their association with intubation outcomes is unclear. <b><i>Objective:</i></b> To compare intubation success, rate of relevant TIAEs, and severe desaturations in neonates intubated with and without stylets. <b><i>Methods:</i></b> Tracheal intubations of neonates in the NICU or DR from 16 centers between October 2014 and December 2018, performed by neonatology or pediatric providers, were collected from the NEAR4NEOs international registry. Primary oral intubations with a laryngoscope were included in the analysis. First-attempt success, the occurrence of relevant TIAEs, and severe oxygen desaturation (≥20% saturation drop from baseline) were compared between intubations performed with versus without a stylet. Logistic regression with generalized estimate equations was used to control for covariates and clustering by sites. <b><i>Results:</i></b> Out of 5,292 primary oral intubations, 3,877 (73%) utilized stylets. Stylet use varied considerably across the centers with a range between 0.5 and 100%. Stylet use was not associated with first-attempt intubation success, esophageal intubation, mainstem intubation, or severe desaturations after controlling for confounders. Patient size was associated with these outcomes and much more predictive of success. <b><i>Conclusions:</i></b> Stylet use during neonatal intubation was not associated with higher first-attempt intubation success, fewer relevant TIAEs, or less severe desaturations. These data suggest that stylets can be used based on individual preference, but stylet use may not be associated with better intubation outcomes.
DOI: 10.6084/m9.figshare.14535471.v1
title: Supplementary Material for: Associations of Stylet Use during Neonatal Intubation with Intubation Success, Adverse Events, and Severe Desaturation: A Report from NEAR4NEOS

description: <b><i>Introduction:</i></b> Intubations are frequently performed procedures in neonatal intensive care units (NICU) and delivery rooms (DR). Unsuccessful first attempts are common as are tracheal intubation-associated events (TIAEs) and severe desaturations. Stylets are often used during intubation, but their association with intubation outcomes is unclear. <b><i>Objective:</i></b> To compare intubation success, rate of relevant TIAEs, and severe desaturations in neonates intubated with and without stylets. <b><i>Methods:</i></b> Tracheal intubations of neonates in the NICU or DR from 16 centers between October 2014 and December 2018, performed by neonatology or pediatric providers, were collected from the NEAR4NEOs international registry. Primary oral intubations with a laryngoscope were included in the analysis. First-attempt success, the occurrence of relevant TIAEs, and severe oxygen desaturation (≥20% saturation drop from baseline) were compared between intubations performed with versus without a stylet. Logistic regression with generalized estimate equations was used to control for covariates and clustering by sites. <b><i>Results:</i></b> Out of 5,292 primary oral intubations, 3,877 (73%) utilized stylets. Stylet use varied considerably across the centers with a range between 0.5 and 100%. Stylet use was not associated with first-attempt intubation success, esophageal intubation, mainstem intubation, or severe desaturations after controlling for confounders. Patient size was associated with these outcomes and much more predictive of success. <b><i>Conclusions:</i></b> Stylet use during neonatal intubation was not associated with higher first-attempt intubation success, fewer relevant TIAEs, or less severe desaturations. These data suggest that stylets can be used based on individual preference, but stylet use may not be associated with better intubation outcomes.
DOI: 10.5281/zenodo.4737315
title: Paramormyrops hopkinsi SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737314
title: Paramormyrops hopkinsi SPAdes preassembly

description: .
DOI: 10.17909/t9-64nx-xd77
title: Senior Thesis Dataset

description: FFI's containing four supernovae
DOI: 10.5281/zenodo.4737340
title: Rhynchopsitta pachyrhyncha SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737339
title: Rhynchopsitta pachyrhyncha SPAdes preassembly

description: .
DOI: 10.5281/zenodo.4737332
title: Data and model code for "Improved phenological escape can help temperate tree seedlings maintain demographic performance under climate change conditions"

description: These files include the model code for the canopy and seedling phenology models associated with the article "Improved phenological escape can help temperate tree seedlings maintain demographic performance under climate change conditions". Models were written in OpenBUGS and the files include the associated data needed to run them.
description: Data were collected between 2015-2019 in southeastern MI, USA.
DOI: 10.5281/zenodo.4737331
title: Data and model code for "Improved phenological escape can help temperate tree seedlings maintain demographic performance under climate change conditions"

description: These files include the model code for the canopy and seedling phenology models associated with the article "Improved phenological escape can help temperate tree seedlings maintain demographic performance under climate change conditions". Models were written in OpenBUGS and the files include the associated data needed to run them.
description: Data were collected between 2015-2019 in southeastern MI, USA.
DOI: 10.34740/kaggle/dsv/2192604
title: Herbarium 2021 RBS
DOI: 10.17632/m73nx5gfb6.2
title: Supplemental data for the paper: Diagnostic Accuracy of Pelvic Ultrasonography in Differentiating Precocious Puberty from Premature Thelarche

description: Supplemental materials
DOI: 10.6084/m9.figshare.13724479
title: Niche properties constrain occupancy but not abundance patterns of native and alien woody species across Hawaiian forests

description: This data set accompanies the manuscript titled "Niche properties constrain occupancy but not abundance patterns of native and alien woody species across Hawaiian forests" published in Journal of Vegetation Science.<br><b>Objective</b>: We examine abundance-occupancy relationships of native and alien woody plant species, and the role of niche properties and functional traits related to dispersal and competition in shaping occupancy and abundance patterns.<br><b>Data</b>: The data file is compiled for 64 native and alien woody species that occur across the Hawaiian archipelago.<br><b>Description of data</b>: <br><br>Scientific_name: scientific name of each woody species<br>Native_Status: either native or alien<br>FirstRecord: Year alien species first recorded in Hawai'i. NAs for native species.<br>WD: wood density, in g cm<sup>-3</sup>. Includes imputed values; please consult Table S1 to see which values are imputed. <br><br>SeedMass_mg: seed mass in mg. Includes imputed values; please consult Table S1 to see which values are imputed<br>Height_m: Maximum height in m. No values are imputed. <br><br>Niche_breadth: Estimated as n-dimensional hypervolume, based on climatic and topographic variables. Only estimated for 58 of the 64 species.<br><br>Niche_position: Estimated as absolute value of the centroid of the n-dimensional hypervolume from the first dimension. Only estimated for 58 of the 64 species.<br><br> Island: Indicates island for which abundance and occupancy were estimated. <br><br>meanRelAbund: Mean relative abundance for each species per island. Values estimated from forest plots. <br><br>medRelAbund: Median relative abundance for each species per island. Values estimated from forest plots. <br><br>Rel_Occupancy: Relative occupancy per species per island. Estimated as the percentage of 32 km2 grid cells in which a species is present.
DOI: 10.6084/m9.figshare.13724479.v1
title: Niche properties constrain occupancy but not abundance patterns of native and alien woody species across Hawaiian forests

description: This data set accompanies the manuscript titled "Niche properties constrain occupancy but not abundance patterns of native and alien woody species across Hawaiian forests" published in Journal of Vegetation Science.<br><b>Objective</b>: We examine abundance-occupancy relationships of native and alien woody plant species, and the role of niche properties and functional traits related to dispersal and competition in shaping occupancy and abundance patterns.<br><b>Data</b>: The data file is compiled for 64 native and alien woody species that occur across the Hawaiian archipelago.<br><b>Description of data</b>: <br><br>Scientific_name: scientific name of each woody species<br>Native_Status: either native or alien<br>FirstRecord: Year alien species first recorded in Hawai'i. NAs for native species.<br>WD: wood density, in g cm<sup>-3</sup>. Includes imputed values; please consult Table S1 to see which values are imputed. <br><br>SeedMass_mg: seed mass in mg. Includes imputed values; please consult Table S1 to see which values are imputed<br>Height_m: Maximum height in m. No values are imputed. <br><br>Niche_breadth: Estimated as n-dimensional hypervolume, based on climatic and topographic variables. Only estimated for 58 of the 64 species.<br><br>Niche_position: Estimated as absolute value of the centroid of the n-dimensional hypervolume from the first dimension. Only estimated for 58 of the 64 species.<br><br> Island: Indicates island for which abundance and occupancy were estimated. <br><br>meanRelAbund: Mean relative abundance for each species per island. Values estimated from forest plots. <br><br>medRelAbund: Median relative abundance for each species per island. Values estimated from forest plots. <br><br>Rel_Occupancy: Relative occupancy per species per island. Estimated as the percentage of 32 km2 grid cells in which a species is present.
DOI: 10.5281/zenodo.4737375
title: Multiplex amplicon sequencing dataset for genotyping the wheat blast fungus from the Minas Gerais state of Brazil

description: We report genotyping data for 81 Magnaporthe oryzae (syn. Pyricularia oryzae) Triticum pathotype (MoT) isolates obtained from wheat (Triticum aestivum L.) in Minas Gerais state, Brazil. The dataset consists of 84 single nucleotide polymorphisms (SNPs) selected from transcript sequences to specifically distinguish between the clonal lineage of the wheat blast fungus that emerged in South Asia in 2016 and other M. oryzae genotypes. The sample coverage includes isolates collected from leaves or spikes of wheat during the epidemic year of 2019 across 10 municipalities. The dataset is provided as an open science resource as part of the OpenWheatBlast initiative. We welcome analyses and feedback from the community.
description: Funding provided by FAPEMIG - Fundação de Amparo à Pesquisa do Estado de Minas Gerais and CNPq - Conselho Nacional de Pesquisa
DOI: 10.5281/zenodo.4737374
title: Multiplex amplicon sequencing dataset for genotyping the wheat blast fungus from the Minas Gerais state of Brazil

description: We report genotyping data for 81 Magnaporthe oryzae (syn. Pyricularia oryzae) Triticum pathotype (MoT) isolates obtained from wheat (Triticum aestivum L.) in Minas Gerais state, Brazil. The dataset consists of 84 single nucleotide polymorphisms (SNPs) selected from transcript sequences to specifically distinguish between the clonal lineage of the wheat blast fungus that emerged in South Asia in 2016 and other M. oryzae genotypes. The sample coverage includes isolates collected from leaves or spikes of wheat during the epidemic year of 2019 across 10 municipalities. The dataset is provided as an open science resource as part of the OpenWheatBlast initiative. We welcome analyses and feedback from the community.
description: Funding provided by FAPEMIG - Fundação de Amparo à Pesquisa do Estado de Minas Gerais and CNPq - Conselho Nacional de Pesquisa
DOI: 10.6084/m9.figshare.14160029
title: Hexavalent vaccines in infants: a systematic literature review and meta-analysis of the solicited local and systemic adverse reactions of two hexavalent vaccines

description: <b>Introduction</b>: The hexavalent vaccine DT3aP-HBV-IPV-Hib (<i>Infanrix hexa</i>, GSK) was first licensed in Europe in 2000. DT2aP-HBV-IPV-Hib (<i>Hexyon/Hexacima/Hexaxim</i>, Sanofi Pasteur), and DT5aP-HBV-IPV-Hib (<i>Vaxelis</i>, MCM Vaccine Company) were licensed in the EU in 2013 and 2016, respectively, based largely on studies demonstrating non-inferiority to DT3aP-HBV-IPV-Hib for immunogenicity and comparable reactogenicity profiles. <b>Methods</b>: We conducted a systematic literature review looking for direct head-to-head trials comparing DT2aP-HBV-IPV-Hib and DT5aP-HBV-IPV-Hib with DT3aP-HBV-IPV-Hib. The incidence of solicited local and systemic reactions following primary series administration of DT3aP-HBV-IPV-Hib or DT2aP-HBV-IPV-Hib were meta-analyzed. <b>Results</b>: A total of 317 unique records were retrieved from the search; nine met the predefined inclusion criteria; seven reported studies comparing DT3aP-HBV-IPV-Hib and DT2aP-HBV-IPV-Hib. Six trials assessing outcomes of the primary vaccination series were identified. Odds ratios and 95% confidence intervals (OR; 95%CI) were computed for DT3aP-HBV-IPV-Hib, using DT2aP-HBV-IPV-Hib as reference, for redness (0.72; 0.63–0.83), pain (0.74; 0.62–0.89), swelling (0.86; 0.74–0.99) at injection site, fever (0.67; 0.54–0.83), persistent crying (0.72; 0.61–0.84), drowsiness (0.82; 0.71–0.94), irritability (0.82; 0.69–0.98), anorexia (0.83; 0.72–0.95), and vomiting (0.96; 0.83–1.11). <b>Conclusion</b>: ORs of analyzed local and systemic solicited adverse reactions after primary vaccination with DT3aP-HBV-IPV-Hib appear to be slightly lower than with DT2aP-HBV-IPV-Hib.
DOI: 10.6084/m9.figshare.14535648
title: An ADMM-Based Distributed Planning Strategy for Natural Gas Network and Electricity Network and Regional Integrated Energy Systems.

description: Integrated energy system coupling with multi-energy devices, energy storage systems, and renewables has been regarded as one of the most promising solutions for future energy systems. Existing natural gas and electricity networks expansion planning, regional integrated energy system siting planning, and interior equipment’s type and capacity planning are urgent problems in practical projects. This paper proposed a joint planning strategy to address the above problems firstly; however, joint planning strategy misleads the ownerships of three agents which investment decisions are made by different investors. Furthermore, the joint planning model is decomposed into three planning subproblems related to corresponding stakeholders, and the alternating direction method of multipliers is adopted to solve the tripartite distributed planning problem. The effectiveness of the planning method is verified on an updated version of IEEE RTS 24-bus electric system, Belgian 20-node natural gas system, and three assumed integrated energy systems. Moreover, algorithm performance considering convergence error, convergence performance and the impact of penalty parameters are further discussed.
DOI: 10.6084/m9.figshare.14535648.v1
title: An ADMM-Based Distributed Planning Strategy for Natural Gas Network and Electricity Network and Regional Integrated Energy Systems.

description: Integrated energy system coupling with multi-energy devices, energy storage systems, and renewables has been regarded as one of the most promising solutions for future energy systems. Existing natural gas and electricity networks expansion planning, regional integrated energy system siting planning, and interior equipment’s type and capacity planning are urgent problems in practical projects. This paper proposed a joint planning strategy to address the above problems firstly; however, joint planning strategy misleads the ownerships of three agents which investment decisions are made by different investors. Furthermore, the joint planning model is decomposed into three planning subproblems related to corresponding stakeholders, and the alternating direction method of multipliers is adopted to solve the tripartite distributed planning problem. The effectiveness of the planning method is verified on an updated version of IEEE RTS 24-bus electric system, Belgian 20-node natural gas system, and three assumed integrated energy systems. Moreover, algorithm performance considering convergence error, convergence performance and the impact of penalty parameters are further discussed.
DOI: 10.5281/zenodo.4737391
title: Crowdsourced air traffic data from The OpenSky Network 2020 [CC-BY]

description: <strong>Motivation</strong> The data in this dataset is derived and cleaned from the full OpenSky dataset to illustrate the development of air traffic during the COVID-19 pandemic. It spans all flights seen by the network's more than 2500 members since 1 January 2019. More data will be periodically included in the dataset until the end of the COVID-19 pandemic. <strong>License</strong> Creative Commons CC-BY The only difference with the original dataset comes from anonymised aircraft information. <strong>Disclaimer</strong> The data provided in the files is provided as is. Despite our best efforts at filtering out potential issues, some information could be erroneous. Origin and destination airports are computed online based on the ADS-B trajectories on approach/takeoff: no crosschecking with external sources of data has been conducted.<br> Fields <strong>origin</strong> or <strong>destination</strong> are empty when no airport could be found. Aircraft information come from the OpenSky aircraft database. Fields <strong>typecode</strong> and <strong>registration</strong> are empty when the aircraft is not present in the database. <strong>Description of the dataset</strong> One file per month is provided as a csv file with the following features: <strong>callsign</strong>: the identifier of the flight displayed on ATC screens (usually the first three letters are reserved for an airline: AFR for Air France, DLH for Lufthansa, etc.) <strong>number</strong>: the commercial number of the flight, when available (the matching with the callsign comes from public open API) <strong>aircraft_uid</strong>: a unique anonymised identifier for aircraft; <strong>typecode</strong>: the aircraft model type (when available); <strong>origin</strong>: a four letter code for the origin airport of the flight (when available); <strong>destination</strong>: a four letter code for the destination airport of the flight (when available); <strong>firstseen</strong>: the UTC timestamp of the first message received by the OpenSky Network; <strong>lastseen</strong>: the UTC timestamp of the last message received by the OpenSky Network; <strong>day</strong>: the UTC day of the last message received by the OpenSky Network; <strong>latitude_1</strong>, <strong>longitude_1</strong>, <strong>altitude_1</strong>: the first detected position of the aircraft; <strong>latitude_2</strong>, <strong>longitude_2</strong>, <strong>altitude_2</strong>: the last detected position of the aircraft. <strong>Examples</strong> Possible visualisations and a more detailed description of the data are available at the following page:<br> &lt;https://traffic-viz.github.io/scenarios/covid19.html&gt; <strong>Credit</strong> Martin Strohmeier, Xavier Olive, Jannis Lübbe, Matthias Schäfer, and Vincent Lenders<br> <strong>"</strong>Crowdsourced air traffic data from the OpenSky Network 2019–2020<strong>"</strong><br> <em>Earth System Science Data</em> 13(2), 2021<br> https://doi.org/10.5194/essd-13-357-2021
DOI: 10.5066/f74t6gkt
title: Bridge-site study data for selected Highway crossings in Mississippi, 2019
DOI: 10.5522/04/13686247.v1
title: Cholesteryl Ester Transfer Protein (CETP) as a Drug Target for Cardiovascular Disease

description: Contains data and computer scripts to generate the data of the manuscript: Cholesteryl Ester Transfer Protein (CETP) as a Drug Target for Cardiovascular Disease.
DOI: 10.5517/ccdc.csd.cc1nwl6b
title: CCDC 1545852: Experimental Crystal Structure Determination

description: Related Article: Ran Guo|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc1nwl7c
title: CCDC 1545853: Experimental Crystal Structure Determination

description: Related Article: Ran Guo, J.-A. Ma|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc218xz7
title: CCDC 1885419: Experimental Crystal Structure Determination

description: Related Article: Ran Guo|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc21j570
title: CCDC 1892371: Experimental Crystal Structure Determination

description: Related Article: Xinyu Zhang, Bo Lin, Jianhui Chen, Jiajia Chen, Yanshu Luo, Yuanzhi Xia|2021|CSD Communication|||
description: Related Article: Xinyu Zhang, Bo Lin, Jianhui Chen, Jiajia Chen, Yanshu Luo, Yuanzhi Xia|2021|Org.Lett.|23|819|doi:10.1021/acs.orglett.0c04043
DOI: 10.5517/ccdc.csd.cc22538n
title: CCDC 1911530: Experimental Crystal Structure Determination

description: Related Article: Xinyu Zhang, Bo Lin, Jianhui Chen, Jiajia Chen, Yanshu Luo, Yuanzhi Xia|2021|CSD Communication|||
description: Related Article: Xinyu Zhang, Bo Lin, Jianhui Chen, Jiajia Chen, Yanshu Luo, Yuanzhi Xia|2021|Org.Lett.|23|819|doi:10.1021/acs.orglett.0c04043
DOI: 10.5517/ccdc.csd.cc240ddz
title: CCDC 1966590: Experimental Crystal Structure Determination

description: Related Article: Ran Guo|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc25s8gq
title: CCDC 2019323: Experimental Crystal Structure Determination

description: Related Article: Lisheng Wang, Fuxing Yang, Xiaoping Xu, Jun Jiang|2021|Org.Chem.Front.|8|2002|doi:10.1039/D0QO01638A
DOI: 10.6084/m9.figshare.14535678
title: Data Congress CL.xlsx

description: Data used to account for the effect of social movements and their legislative allies on the passage of amendments in Chile.