cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zzbmwt
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Girardinus uninotatus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052990-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55gsac
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Rosularia platyphylla"
 ]
}

 The dataset includes 48 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052989-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnzkcp
title: Occurrence Download

description: A dataset containing 832 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dendrocopos major",
 "BasisOfRecord is Specimen",
 "Country is one of (Russian Federation)"
 ]
}

 The dataset includes 832 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052983-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c42enq
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "GadmGid is CHN.28_1",
 "TaxonKey is Arctium lappa"
 ]
}

 The dataset includes 55 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052991-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dqvftp
title: Occurrence Download

description: A dataset containing 3683 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sisyrinchium campestre"
 ]
}

 The dataset includes 3683 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052993-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h6yyd9
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Singapore",
 "Geometry POLYGON((103.8675 1.31545,103.87632 1.31545,103.87632 1.32446,103.8675 1.32446,103.8675 1.31545))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2024-2025"
 ]
}

 The dataset includes 50 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052996-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgxqqk
title: Occurrence Download

description: A dataset containing 6887 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matthiola incana"
 ]
}

 The dataset includes 6887 records from 350 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052992-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spkgd6
title: Occurrence Download

description: A dataset containing 181925 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "DatasetKey is one of (INPN - Données flore des CBN agrégées par la FCBN, SILENE-FAUNE-PACA - CEN_PACA_2017_12_18, 2019_LPO PACA_5, Centralisation des observations floristiques dans le cadre du SINP - Observations floristiques - plateforme SINP régionale SILENE PACA, Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche complète à un ou plusieurs passages - ASPE - OFB, 2022_LPO PACA_16, 2021_LPO PACA_1, 2020_LPO PACA_14, 2020_MNHN_1, Données piscicoles et astacicoles des cours d'eau de France métropolitaine bancarisées dans ASPE (OFB) - Données acquises selon le protocole de pêche partielle par points - ASPE - OFB)",
 {
 "or" : [
 "Geometry POLYGON((5.72409 43.85309,5.96763 43.85309,5.96763 44.11459,5.72409 44.11459,5.72409 43.85309))",
 "Geometry POLYGON((5.8897 43.90869,5.93332 44.16206,5.70998 44.1646,5.75202 43.98562,5.8897 43.90869))"
 ]
 },
 "PublishingOrg is 1928bdf0-f5d2-11dc-8c12-b8a03c50a862"
 ]
}

 The dataset includes 181925 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052954-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3929/ethz-b-000416919
title: Ancestral Ways of Life and Human Capital Formation in Kenya Data and Programs

description: There is a rich literature on the importance of historical agriculture as long-term shaper of culture, institutions, and economic development. How much this changes over time, however, we understand much less. In Kenya, we compare the educational attainment between individuals with nomadic and non-nomadic ancestors over time and find a large and quite persistent gap in all periods that we examine (2006, 2009, 2013, 2016) as well as in different age cohorts. We find an especially large gap for individuals with nomadic ancestors who live in rural areas and who are women. In urban areas, we also do find evidence for some, recent improvement, but only when we restrict the comparison group to individuals from other non-English and non-Swahili speaking ethnicities.
DOI: 10.15468/dl.2bzewa
title: Occurrence Download

description: A dataset containing 13809 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'BA'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2001 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 13809 records were derived from 115 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052953-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2s463
title: Occurrence Download

description: A dataset containing 39956 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is KOR.6.9_2"
 ]
}

 The dataset includes 39956 records from 119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052994-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17098193
title: Bioinformatiha25 Tutorial on Intercellular signaling in Single Cell RNA

description: Here you will find all the materials and instructions needed to follow the hands-on sessions.This tutorial will use two main analysis packages to meet different user preferences and levels of proficiency: a Python-package, i.e. CellPhoneDB, and a R package, i.e. scSeqComm! You may choose to work in either Python or R, depending on your background .

⚙️ Setup Instructions (Before the Tutorial)

To participate in the hands-on sessions, you will need to set up your environment and download the required materials in advance.

📥 Installation



 Python-based analysis: Install the CellPhoneDB package by following the official documentation:https://cellphonedb.readthedocs.io/en/latest/

R-based analysis: Install the Seurat and scSeqComm packages by following their installation guides:



Seurat https://satijalab.org/seurat/articles/install.html

scSeqComm https://gitlab.com/sysbiobig/scseqcomm




⚠️ Installing all the packages is not mandatory — you can use the language you prefer, or simply follow along using the provided pre-rendered HTML walkthroughs if you do not wish to run code locally.

📁 Download the Tutorial Materials 

Download all tutorial materials from the shared repository folder. This includes: a Jupyter notebook (CellPhone.ipynb), a R Markdown script (scSeqComm.Rmd), the datasets (.h5ad for Python and .rds for R) and pre-rendered HTML versions of the tutorials.
DOI: 10.15468/dl.kmfh5u
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis viscosa",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053000-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cgv72u
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis viscosa",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 99 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052999-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9l3-5l9-asf
title: Psorergates microti Fain, Lukoschus & Hallmann, 1966

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.xebfgv
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Physalis viscosa",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053001-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17097739
title: Soil Ecological Data from the CATENA Study "Altitudinal patterns of soil carbon and nitrogen dynamics among contrasting forest and alpine shrub meadow ecosystems on the highest peak of the Qinling Mountains"

description: This dataset contains the data supporting the findings of the study "Altitudinal patterns of soil carbon and nitrogen dynamics among contrasting forest and alpine shrub meadow ecosystems on the highest peak of the Qinling Mountains" (submitted to CATENA). This study aimed to investigate the variation patterns in the stocks, biochemical stability, and turnover rates of soil organic carbon (SOC) and soil total nitrogen (STN) pools along the altitudinal gradient.

The data include:

Yang_2025.txt: A text file containing measured soil carbon and nitrogen parameters (e.g., Soil Organic Carbon (SOC), soil total nitrogen (STN)) for all samples.

README_Yang_2025.txt: A text file providing a comprehensive description of the project title, author information, data collection methods and timing, dataset content and structure, software versions used, and variable definitions.

This dataset is currently under restricted access status due to the unpublished status of associated studies. It serves as an invaluable resource for validating our research findings and for future investigations predicting mountain ecosystem responses to global change.
DOI: 10.5281/zenodo.17097740
title: Soil Ecological Data from the CATENA Study "Altitudinal patterns of soil carbon and nitrogen dynamics among contrasting forest and alpine shrub meadow ecosystems on the highest peak of the Qinling Mountains"

description: This dataset contains the data supporting the findings of the study "Altitudinal patterns of soil carbon and nitrogen dynamics among contrasting forest and alpine shrub meadow ecosystems on the highest peak of the Qinling Mountains" (submitted to CATENA). This study aimed to investigate the variation patterns in the stocks, biochemical stability, and turnover rates of soil organic carbon (SOC) and soil total nitrogen (STN) pools along the altitudinal gradient.

The data include:

Yang_2025.txt: A text file containing measured soil carbon and nitrogen parameters (e.g., Soil Organic Carbon (SOC), soil total nitrogen (STN)) for all samples.

README_Yang_2025.txt: A text file providing a comprehensive description of the project title, author information, data collection methods and timing, dataset content and structure, software versions used, and variable definitions.

This dataset is currently under restricted access status due to the unpublished status of associated studies. It serves as an invaluable resource for validating our research findings and for future investigations predicting mountain ecosystem responses to global change.
DOI: 10.5281/zenodo.17093626
title: qPCR data of the article "Comparative Analysis of Telomere Length in Peripheral Blood of Breast Cancer BRCA1 Mutation Carriers and Non-Carriers"

description: EDS files contain data generated by the ViiA™ 7 qPCR machine (Applied Biosystems ViiA™ 7 Real-Time PCR System). 

Data have been processed using QuantStudio software.
DOI: 10.5281/zenodo.17093627
title: qPCR data of the article "Comparative Analysis of Telomere Length in Peripheral Blood of Breast Cancer BRCA1 Mutation Carriers and Non-Carriers"

description: EDS files contain data generated by the ViiA™ 7 qPCR machine (Applied Biosystems ViiA™ 7 Real-Time PCR System). 

Data have been processed using QuantStudio software.
DOI: 10.15468/dl.v4bqae
title: Occurrence Download

description: A dataset containing 7178 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Florient - a database dealing with historic wild plant occurrences"
 ]
}

 The dataset includes 7178 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053003-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9p97t5
title: Occurrence Download

description: A dataset containing 781023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Australia)",
 "HasCoordinate is true",
 "Year is greater than or equal to 1984",
 "Year is less than or equal to 1984"
 ]
}

 The dataset includes 781023 records from 359 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052950-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ceq7q7
title: Occurrence Download

description: A dataset containing 391860 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-123.24957 49.24136,-123.27262 49.20031,-123.17546 49.21347,-123.24957 49.24136))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2002-2022"
 ]
}

 The dataset includes 391860 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002612-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gemwtg
title: Occurrence Download

description: A dataset containing 16257 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is France",
 "BasisOfRecord is Living Specimen"
 ]
}

 The dataset includes 16257 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042081-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-22246
title: Dollar Bill funeral (Inglewood), 1951

description: 8 images. Dollar Bill funeral (Inglewood), 5 October 1951. Lieutenant Malcolm A. Stewart (funeral); Mrs. Evelyn Stewart; Major M.A. Lanning (Chaplain); Mrs. Gladys Alcala; Mrs. Flora Stewart (mother of deceased); Hubert Stewart (husband).; Caption slip reads: "Photographer: Olmo. Date: 10-05. Reporter: Parker. Assignment: Dollar bill funeral. Casket pic at mortuary: At left is floral torn dollar bill which the late Lt. Malcolm A. Stewart shared with his buddies, who are now his pallbearers. In front stands military escort for casket, Capt. C. C. McMullin. At left, front to rear, are: Hampton Riley, Charles R. Hutchinson, Dick Leonis. At right, front to rear, are: Bill Hunter, Gordon MacDonald and Jerry Martin. Chaplain, Major M. A. Lanning, presents flag from casket of Lt. Malcolm A. Stewart at Inglewood Cemetery to grieving parents. L to R on relatives: Bob Durant, wife Evelyn, Mrs. Gladys Alcala, husband Rudy, Mrs. Iris Cox (aunt of deceased), Mrs. Flora Stewart (mother) and Hubert Stewart, husband. At rear are row of grieving buddies who shared the torn dollar bill. At graveside, on extreme left: Hubert Stewart, father of boy, condoles Mrs. Flora Stewart, mother. Chaplain with back to camera is unidentified. L to R -- his buddies, are: Charles R. Hutchinson, Gordon MacDonald, Jerry Martin, Dick Leonis, Bill Hunter, Hampton Riley".
DOI: 10.15468/dl.msmvyk
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asclepias longissima N.E.Br."
 ]
}

 The dataset includes 9 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028785-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-09.2058228/2357355
title: Data for EMSL Project 48666 from September 2020
DOI: 10.15468/dl.2cdz5z
title: Occurrence Download

description: A dataset containing 13859 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Athene noctua (Scopoli, 1769)",
 "DatasetKey is Observation.org, Nature data from around the World",
 "Country is one of (Germany, France, Spain, Portugal, Denmark, Austria, Italy, Switzerland, Greece, Poland, Hungary, Slovenia, Sweden, Norway, Slovakia, Montenegro, Croatia, North Macedonia, Serbia, Iceland, Ireland, United Kingdom of Great Britain and Northern Ireland, Albania, Bosnia and Herzegovina, Bulgaria, Finland)"
 ]
}

 The dataset includes 13859 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006402-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-21990
title: White Point School's Halloween dress up celebration, 1951

description: 3 images. White Point School's Halloween dress up celebration, 31 October 1951. Nola MacHale (as "Masked Marvel"); Frank Steele (Fisherman); Doris Doyen; Patty Lee.; Supplementary material reads: "Gershon. City Desk. Illus. Halloween. Two shots show Nola MacHale as 'Masked Marvel' reaching into bag held by fisherman Frank Steele. One shot shows left, Doris Doyen and Patty Lee looking at dummy 'witch'. This was all part of White Point School's Halloween 'dress-up' celebration. Each of the schoolrooms had their own patio play area decorated".
DOI: 10.25582/data.2020-06.2002244/2357356
title: Data for EMSL Project 48666 from June 2020
DOI: 10.15468/dl.n0al0r
title: Occurrence Download

description: A dataset containing 8635 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynomys leucurus Merriam, 1890"
 ]
}

 The dataset includes 8635 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042084-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8hbxzn
title: Occurrence Download

description: A dataset containing 1746 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-99.96605 25.03781,-99.84118 25.03781,-99.84118 25.19211,-99.96605 25.19211,-99.96605 25.03781))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1746 records from 55 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028798-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/examiner-c44-21970
title: Sack Race, Tug of War, and Mud Fight at Loyola University, sophomores and freshmen,1951.

description: 16 images. Sack Race, Tug of War, and Mud Fight at Loyola University, sophomores and freshmen, 05 October 1951. Stephen Rich; Tim Ziegler.; Caption slip reads: "Photographer: Sandusky. Date: 1951-10-04. Assignment: Sack race, tug of war and mud fight at Loyola. D25, 26: Sack fight -- sacks full of flowers. D1, 2: Stephen Rich and Tim Ziegler (don't know if l/r or not -- no one can tell anyhow). Shots with tug of war show freshmen vs sophomore -- everyone wound up in mud puddle. Rest of shots show mud fight, sophomores defending hill & freshmen attempting to climb greased pole on hill & capture dink hat. Sophomres succeeded in defending 'heartbreak hill'".
DOI: 10.25582/data.2020-07.2025109/2357357
title: Data for EMSL Project 48666 from July 2020
DOI: 10.15468/dl.43gexq
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eriosema pumilum Verdc."
 ]
}

 The dataset includes 24 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0201874-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.