cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24634107.v1
title: Data files supporting the figures and analyses in Kong et al. - Melatonin Does Not Affect the Stress-Induced Phase Shifts of Peripheral Clocks in Male Mice

description: <b>Abstract</b>Repeated or chronic stress can change the phase of peripheral circadian rhythms. Melatonin is thought to be a circadian clock-controlled signal that might play a role in synchronizing peripheral rhythms, in addition to its direct suppressing effects on the stress axis. In this study we test whether melatonin can reduce the social-defeat stress induced phase shifts in peripheral rhythms, either by modulating circadian phase or by modulating the stress axis. Two experiments were performed with male melatonin deficient C57BL/6J mice carrying the circadian reporter gene construct (PER2::LUC). In the first experiment, mice received night-restricted (ZT11-21) melatonin in their drinking water, resulting in physiological levels of plasma melatonin peaking in the early dark phase. This treatment facilitated re-entrainment of the activity rhythm to a shifted light-dark cycle, but did not prevent the stress-induced (ZT21-22) reduction of activity during stress days. Also, this treatment did not attenuate the phase delaying effects of stress in peripheral clocks in the pituitary, lung and kidney. In a second experiment, pituitary, lung and kidney collected from naïve mice (ZT22-23), were treated with melatonin (Mel), dexamethasone (Dex), or a combination of the two. Dex application affected PER2 rhythms in the pituitary, kidney and lung, by changing period, phase or both. Administering Mel did not influence PER2 rhythms nor did it alleviate Dex-induced delays in PER2 rhythms in those tissues. We conclude that exogenous melatonin is insufficient to affect peripheral PER2 rhythms and reduce stress effects on locomotor activity and phase changes in peripheral tissues.
DOI: 10.25403/upresearchdata.22082876.v1
title: Children's understanding of child-wellbeing

description: This data is aimed at exploring children’s perspectives on their well-being as a pathway to a sustainable future within the South African context. A qualitative research approach was utilised which had an exploratory and descriptive purpose. The research design was an instrumental case study. The study sample was purposively selected and snowball sampling was used to recruit participants who composed of ten children between the ages of 8 and 12 residing in Region 7 of the City of Tshwane. Data collection was done through one-on-one semi-structured interviews using an interview schedule and visual communication cards. Data was analysed using Braun and Clark’s six step thematic data analysis model. Trustworthiness of data was enhanced by applying the criteria of credibility, transferability, dependably and confirmability.
DOI: 10.6084/m9.figshare.20098139.v5
title: Human development and Tourism: Evidence from Ten Countries (Table 2 Data Specification)

description: Variables used in Human development and Tourism study for ten countries: Human Development Index (HDI) (Human Development Reports/UNDP, 2021); Tourist arrivals (UNWTO & WB, 2021); Jobs (ILO, 2018); Government effectiveness and Political Stability & Absence of Violence/Terrorism (Kaufmann, Kraay & Mastruzzi (2010) /World Bank, 2021)
DOI: 10.6084/m9.figshare.c.3704467_d1.v1
title: Additional file 6: of The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases

description: Table of CGIs. 6.1 CpG islands and other genomic features in Echinococcus species genomes. 6.2 Summary of correlations between CGI density and genome features in the three Echinococcus species; 6.3-6.8 Differential CGIs distribution upstream Echinococcus genes (presence/absent in Echinococcus genomes). (XLS 204 kb)
DOI: 10.6084/m9.figshare.11999997.v1
title: Supplementary Material for: Retinal “Caratopathy”: Diamond Dust Residuals after Surgeries

description: Diamond dust particles were identified within patients’ eyes both during vitrectomy procedures using diamond-dusted membrane scrapers and in postoperative clinical examinations. The particles had no impact on the patients’ vision and caused no apparent sequelae. Scanning electron microscopy analysis showed the average particle size to be 23.4 μm and an unequal surface area for particle adhesion onto the soft tip. It was determined that diamond dust particles can dislodge from the silicone tip of the Tano diamond-dusted membrane scrapers during the insertion into valve trocars throughout vitrectomy operations and deposit on the retinal surface or within macular holes. Ophthalmologists should be aware of residual diamond particles during procedures and consider diamond dust retinopathy in the differential diagnosis of crystalline retinopathies. Understanding the appearance of residual particles on the retina allows for future studies revealing the long-term impact on patient’s visual performance.
DOI: 10.6084/m9.figshare.24559972.v1
title: Govaert et al GEB Trait–micro‐environment relationships of forest herb communities across Europe

description: Data and script for the analyses described in Govaert et al GEB Trait–micro‐environment relationships of forest herb communities across Europe
DOI: 10.6084/m9.figshare.20377539.v1
title: Raw Data and Report Analysis_Destination Brand Love.xlsx

description: This is raw data and results report of our study.
DOI: 10.6084/m9.figshare.18480917.v1
title: Skeletal muscle and adipose tissue at the C3 vertebral level for TCIA HNSCC patients

description: The accurate determination of sarcopenia is critical for disease management in patients with head and neck cancer (HNC). Quantitative determination of sarcopenia is currently dependent on manually-generated segmentations of skeletal muscle derived from computed tomography (CT) cross-sectional imaging. This has prompted the increasing utilization of machine learning models for automated sarcopenia determination. However, extant datasets of head and neck CT imaging currently do not provide the necessary manually-generated skeletal muscle segmentations at the C3 vertebral level needed for building these models. In this data descriptor, we detail the annotation of a large set of head and neck CT images for use in automated sarcopenia-related clinical decision making and body composition analysis. A set of 394 HNC patients were selected from The Cancer Imaging Archive, and their skeletal muscle and adipose tissue was manually segmented at the C3 vertebral level using sliceOmatic in .tag format. Subsequently, using publicly disseminated Python scripts, we generated corresponding segmentations files in Neuroimaging Informatics Technology Initiative format. In addition to segmentation data, additional clinical demographic data germane to body composition analysis have been retrospectively collected for these patients from the MD Anderson databases. These data are a valuable resource for studying sarcopenia and body composition analysis in patients with HNC.<br>Corresponding data descriptor: https://www.nature.com/articles/s41597-022-01587-w.
DOI: 10.6084/m9.figshare.25406389.v1
title: rumdetect2017

description: Datasets========The main directory contains the directories of two Twitter datasets: twitter15 and twitter16. In each directory, there are:- 'tree' sub-directory: This folder contains all the tree files, each of which corresponds to the tree structure given a source tweet whose file name is indicated by the source tweet ID. In the tree file, each line represents an edge given in the following format: ** parent node -&gt; child node ** Each node is given as a tuple: ['uid', 'tweet ID', 'post time delay (in minutes)'] - label.txt file: This file provides the ground-truth labels of the trees in a format like: ** 'label:source tweet ID' - source_tweets.txt file: This file provides the source posts content of the trees in a format like: ** 'source tweet ID \t source tweet content' <br>Note that constrained by the terms of Twitter service, we cannot contain the content of the rest of the tweets. Data users can obtain the sepcifics based on the provided tweet IDs and uids by their own.<br>Feature description===================- Content features: uni-grams, bi-grams (presence/absence, binary)- User features: ** # of followers ** # of friends ** ratio of followers and friends ** # of history tweets ** registration time (year) ** whether a verify account or not<br>References==========Substantial number of source tweets and their correspoding propagations trees were extracted based on two reference datasets described and released by the following works:<br>- twitter15: @inproceedings{liu2015real, title={Real-time Rumor Debunking on Twitter}, author={Liu, Xiaomo and Nourbakhsh, Armineh and Li, Quanzhi and Fang, Rui and Shah, Sameena}, booktitle={Proceedings of the 24th ACM International on Conference on Information and Knowledge Management}, pages={1867--1870}, year={2015} }<br>- twitter16: @inproceedings{ma2016detecting, title={Detecting Rumors from Microblogs with Recurrent Neural Networks}, author={Ma, Jing and Gao, Wei and Mitra, Prasenjit and Kwon, Sejeong and Jansen, Bernard J. and Wong, Kam-Fai and Meeyoung, Cha}, booktitle={The 25th International Joint Conference on Artificial Intelligence}, year={2016}, organization={AAAI} } If you use the datasets released hereby, please also cite:<br> @inproceedings{ma2017detect, title={Detect Rumors in Microblog Posts Using Propagation Structure via Kernel Learning}, author={Ma, Jing and Gao, Wei and Wong, Kam-Fai}, booktitle={Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers)}, volume={1}, pages={708--717}, year={2017} }<br><br><br>
DOI: 10.6084/m9.figshare.25329127.v1
title: Data and code for: Hobart et al. "Annual grass invasion is transforming the sagebrush biome’s songbird communities"

description: These files accompany Hobart et al. "Annual grass invasion is transforming the sagebrush biome’s songbird communities" to enable recreation of the analyses therein.
DOI: 10.6084/m9.figshare.27827127.v1
title: <b>The balance stabilising benefit of social touch: influence of an individual’s age and the partner’s relative body characteristics</b>

description: Extracted balance parameters for paired single-legged stance as a function of visual feedback and social touch
DOI: 10.6084/m9.figshare.22360741.v1
title: SuppTable_enrichment.xlsx

description: Tables with enrichment analysis results
DOI: 10.6084/m9.figshare.26340673.v4
title: Summary of DVRT Questionnaire Results and Exam Scores

description: Summary of DVRT Questionnaire Results and Exam Scores
DOI: 10.6084/m9.figshare.19778938.v2
title: Supplementary Table 3. Identifiers of all proteins quantified in SomaScan.

description: Identifiers of all proteins quantified in SomaScan.
DOI: 10.6084/m9.figshare.21154660.v1
title: A New Boredom-aware Dual-resource Constrained Flexible Job Shop Scheduling Problem Using hybrid evolutionary algorithm

description: This is the experimental data of the manuscript entitled “A New Boredom-aware Dual-resource Constrained Flexible Job Shop Scheduling Problem Using hybrid evolutionary algorithm”. All data are generated through computer simulation and saved in the file with csv format. There include 18 instances used to verify the performance of proposed algorithm and model. The datasets show the number of jobs and corresponding operations, the type corresponding to each operation, and the number of machines and workers. The set of machines and workers available for each operation and the time required to process each operation on the available machines with standard efficiency also show in the datasets. The datasets also contain the types for operations that each worker can process, the switching time for each worker between two types of operations, and the initial efficiency of each worker in processing each type of operations. Moreover, motivation influence rate of workers, boredom influence rate of workers, and the three time nodes of efficiency conversions are also included.
DOI: 10.17632/yj5cbjv2nm.1
title: Sustainability and Performance

description: SLR
DOI: 10.6084/m9.figshare.14579328.v1
title: Supplementary Material for: Comparative Cytogenetic Analysis of Three Eumeninae Species (Hymenoptera, Vespidae)

description: Eumeninae represents the largest subfamily within Vespidae, with 3,600 species described. Of these, only 18 have been cytogenetically analysed. In the present study, we used both classical and molecular techniques to characterise and compare the karyotypes of 3 Eumeninae species, namely, <i>Ancistrocerus</i> sp., <i>Pachodynerus grandis,</i> and <i>Pachodynerus nasidens</i>. <i>Ancistrocerus</i> sp. presented a haploid chromosome number of n = 12, with the first 2 chromosomes of the karyotype being almost entirely heterochromatic and much larger than the remaining chromosomes. The 2 <i>Pachodynerus</i> species presented the same chromosome number (n = 11 and 2n = 22) but displayed different karyotypic formulae<i>.</i> Additionally, chromosomal polymorphisms were observed in the analysed <i>P. nasidens</i> female. In the 3 species, heterochromatin was located in one of the chromosome arms. Fluorochrome staining revealed a balanced composition of AT and GC bases within the chromatin for each of the 3 species, except for few regions that were visibly GC-rich. All species had a single 18S rDNA site that co-localised with GC-rich regions; however, this localisation varied from species to species and not all GC-rich regions corresponded to ribosomal genes. Based on the cytogenetic data obtained here, we discuss the possible numerical/structural rearrangements that may be involved in the karyotypic evolution of the 3 studied species. In addition to the first description of the molecular cytogenetic characteristics of the Eumeninae subfamily and the genus <i>Pachodynerus</i>, this study also provides a relevant contribution towards the discussion of chromosomal evolution in Eumeninae wasps.
DOI: 10.6084/m9.figshare.24441043.v2
title: Li-2021-Global urban growth between 1870 and 2100 from integrated high resolution mapped data and urban dynamic modeling

description: Li-2021-Global urban growth between 1870 and 2100 from integrated high resolution mapped data and urban dynamic modeling
DOI: 10.15468/dl.6q9erd
title: Occurrence Download

description: A dataset containing 1921 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cannabis sativa L."
 ]
}

 The dataset includes 1921 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011412-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.21529092.v2
title: Fish gut microbiome sequences of 20 reef fish species from the South Pacific (16S sequencing, V4)

description: Paired-end fastq.gz files are uploaded. metadata info can be found in the allmerged-metadata4.txt file which is also uploaded. Samples were run on an Ilumina Miseq for 16S amplicon sequencing with 300bp paired end coverage with a v3 kit. Primers were 515F and 806R. See https://github.com/samd1993/FishyMammals for analysis files and metadata (same as the one posted here and additional ones with more sample info).Abstract: Animal gut microbiomes are critical to host physiology and fitness. The gut microbiomes of fishes—the most abundant and diverse vertebrate clade—have received little attention relative to other clades. Coral reef fishes, in particular, make up a wide range of evolutionary histories and feeding ecologies that are likely associated with gut microbiome diversity. The repeated evolution of herbivory in fishes and mammals also allows us to examine microbiome similarity in relationship to diet across the entire vertebrate tree of life. Here, we generate a large coral reef fish gut microbiome dataset (n=499 samples, 19 species) and combine it with a diverse aggregation of public microbiome data (n=447) to show that host diet drives significant convergence between coral reef fish and mammalian gut microbiomes. We demonstrate that this similarity is largely driven by carnivory and herbivory and that herbivorous and carnivorous hosts exhibit distinct microbial compositions across fish and mammals. We also show that fish and mammal gut microbiomes share prominent microbial taxa, including <i>Ruminoccocus spp.</i> and <i>Akkermansia spp.</i>, and predicted metabolic pathways. Despite the major evolutionary and ecological differences between fishes and mammals, our results reveal that their gut microbiomes undergo similar dietary selective pressures. Thus, diet, in addition to phylosymbiosis must be considered even when comparing the gut microbiomes of distantly related hosts.
DOI: 10.6084/m9.figshare.7927136.v1
title: gVCF_HG02108

description: 1000 Genomes gVCF mapped to hs37d5 for HG02108. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.24856368.v1
title: Testing the Accuracy of Wildlife Insight in Detecting Animal Presence.

description: Here we tested the accuracy of utilizing the automatic application, Wildlife Insight, in accurately detecting and identifying observed animal species. We compared over 1500 processed images fro wildlife insight with the same 1500 images visually processed by observers to determine the accuracy of this application.
DOI: 10.6084/m9.figshare.1120486.v1
title: Science blogging: An exploratory study of motives, styles, and audience reactions (supplementary data)

description: Supplementary data from Mahrt, M., & Puschmann, C. (2014). Science blogging: An exploratory study of motives, styles, and audience reactions. Journal of Science Communication, 13(3), A05.
DOI: 10.6084/m9.figshare.17916650.v1
title: Supplementary Material for: Comorbidities as Risk Factors for Severe Disease in Hospitalized Elderly COVID-19 Patients by Different Age-Groups in Japan

description: <b><i>Introduction:</i></b> Old age is an independent risk factor (RF) for severe COVID-19; evidence for clinico-epidemiological characteristics among elderly COVID-19 patients is scarce. We aimed to analyze clinical and epidemiological characteristics and comorbidities associated with COVID-19 inpatients in age-stratified populations of an elderly COVID-19 cohort. <b><i>Methods:</i></b> We conducted a retrospective cohort study, using nationwide registry data of COVID-19 patients hospitalized before October 31, 2020 (major information entered in the registry as of December 28, 2020). Participants were divided by age according to the Japan Geriatrics Society and the Japan Gerontological Society: pre-old (65–74 years), old (75–89 years), and super-old (≥90 years). Multivariable logistic regression (MLR) analyses were conducted to identify stratified risk and relationships with comorbidities associated with worse outcomes in different age-groups of elderly patients. Demographics and supportive care were evaluated by category. <b><i>Results:</i></b> Data of 4,701 patients from 444 hospitals were included. Most patients (79.3%) had at least one comorbidity; the proportion of patients with hypertension was high in all categories. The proportion of patients with dementia, cardiovascular disease, and cerebrovascular disease increased with age. The percentage of patients who underwent invasive mechanical ventilation/extracorporeal membrane oxygenation was lower in the super-old group. In total, 11.5% of patients died (5.3%, pre-old; 15.2%, old; and 22.4%, super-old). MLR showed that the risk of critical illness differed among age-groups. Male sex was a significant RF in all ages. Collagen disease, moderate to severe renal disorder, and dialysis were significant RFs in older patients, while hematological malignancies and metastatic tumors were more important RFs for severe disease in relatively younger patients. Most of the RFs for critical illnesses were associated with death. <b><i>Conclusion:</i></b> Differences in the epidemiological and clinical characteristics among the different age-groups were found.
DOI: 10.6084/m9.figshare.3573948.v1
title: Electrically meaningful power system test case diagrams (NESTA archive)

description: This collection of images provides simple test system diagrams for most of the test power systems in the NESTA test case archive (see https://arxiv.org/abs/1411.0359) <br><br>It can be hard for researchers to visualize data relevant to these networks. These images were created by applying the techniques described in: <br>P. Cuffe; A. Keane, "Visualizing the Electrical Structure of Power Systems," in <i>IEEE Systems Journal</i>, 2015<br><br>The "Power Transfer" distance was use to create each diagram (see ibid. Section II. 3) As such, the diagrams are electrically meaningful: loosely speaking, buses drawn in close proximity should be able to transact power with each other with ease.<br><br>Buses have been labelled as space permits, starting with the highest voltage buses first.<br><br><br>
DOI: 10.6084/m9.figshare.5720461.v1
title: Periodic complex map germs and foliations

description: Abstract In this paper we study topological and analytical conditions on the orbits of a germ of diffeomorphism in the complex plane in order to obtain periodicity. In particular, we give a simple proof of a finiteness criteria for groups of analytic diffeomorphisms, stated in Brochero Martínez 2003. As an application, we derive some consequences about the integrability of complex vector fields in dimension three in a neighborhood of a singular point.
DOI: 10.6084/m9.figshare.11997078.v1
title: Effect of solvent polarity on extraction yield and antioxidant properties of phytochemicals from bean (Phaseolus vulgaris) seeds

description: The effect of solvent polarity on extraction yield and antioxidant properties of phytochemical compounds in bean seeds was studied. Seed flour of three varieties of bean was extracted in a series of organic solvents with increasing polarity (n-hexane, petroleum ether, chloroform, ethyl acetate, ethanol, acetone and water). Preliminary screening of phytochemicals showed the presence of tannins, flavonoids, cardiac glycosides, anthocyanins, terpenoids, carotenoids, ascorbic acid and reducing compounds in all extracts. One way analysis of variance (ANOVA) of results showed that extraction yield, phytochemical content and antioxidant properties were significantly influenced (p&lt;0.05) by the polarity of extracting solvents. The regression analysis of data showed polarity-dependent second order polynomial variations in the extraction yield, phytochemical contents, antioxidant activity, reducing properties and free radical scavenging activity of each variety. Extraction in highly polar solvents resulted in high extract yield but low phenolic and flavonoid content as compared to non-polar ones. The polarity-dependent increase in total antioxidant activity and reducing properties indicates the extraction of strong antioxidant compounds in polar solvents. The study suggests the use of a combination of polar and nonpolar solvents to increase the extraction efficiency of phytochemicals with good antioxidant quality from the bean and other legume seeds.