cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/6zc5md
title: Bacterial diversity in the South Adriatic Sea during winter of 2016

description: Bacteria represent the most important microorganisms in the world oceans comprising up to 75% of the total biomass at surface and playing fundamental processes for biogeochemistry. Along the water column, they are useful markers of the trophic state of water masses, therefore representing useful ecological indicators in the surveyed areas. In this study in the southern Adriatic Sea bacteria were quantified by flow cytometry and their diversity assessed by high-throughput sequencing (HTS). In addition, the most represented bacterial groups were quantified by qPCR. The samples were collected from the surface to the seabed, at a total of 16 different depths at four stations in the southern Adriatic Sea, during the late winter BIOTA (BIO-Tracing Adriatic water masses) cruise conducted in 2016. The investigated area showed an unusual circulation characterized by a mixed layer down to 200 m, which differed from the usual winter convection conditions, typical of middle-altitude ecosystems and important for the seasonal picoplankton dynamics in the South Adriatic Sea. Heterotrophic bacteria were separated into HNA (relative High Nucleic Acid content) and LNA (Low Nucleic Acid content) subpopulations with abundances up to 1.8 x 105 and 8.8 x 105 cells/mL, respectively. HNA populations dominated at offshore stations reaching their maximum at depths below the euphotic zone. The bacterial community was dominated by Alphaproteobacteria accounting for &gt; 40% of the total, represented by the SAR11 clade (90.84%), followed by Marinimicrobia (18% of the total), mainly represented by clade SAR406 (8.44%). However, distinctive bacterial groups were found in euphotic layer (Bacteroidetes and Actinobacteria) and aphotic layer samples (Deltaproteobacteria, Marinimicrobia, Chloroflexi, Acidobacteria and Planctomycetes). qPCR assays confirmed HTC results with abundances of targeted bacterial groups found to vary between different sampling points and sampling depths and values ranging from 8.7 x 103 to 9.13 x 105 copy number/mL for Alphaproteobacteria, from 1.44 x 104 to 5.11 x 105 copy number/mL for Gammaproteobacteria and from 1.8 x 103 to 2.4 x 105 copy number/mL for Bacteriodetes. For all targeted taxa higher abundances were found in the euphotic than in the aphotic zone. Introducing of different methodological approaches to the study allowed us to get better insight into the structure of the bacterial assemblages in the South Adriatic.
DOI: 10.5281/zenodo.17140517
title: Tracking of stakeholder engagement across European Freshwater management organisations

description: Tracking of stakeholder engagement across European Freshwater management organisations.
DOI: 10.15468/dznud8
title: Cataloging the Microbial Diversity of Sundarbans in the Backdrop of Climate Change

description: The influence of temporal and spatial variations on the microbial population in sediments of Sundarbans has been assessed using 16S rRNA gene pyrosequencing. The extraction of DNA from the sediment samples collected from the surface (2 cm) and subsurface (16 cm) layers in two seasons (monsoon and post monsoon) and the direct application of the 16S rRNA gene pyrosequencing resulted in approximately 117 Mbp of data from three sampling stations (Jharkhali, Sahidnagar and Godkhali). The taxonomic analysis of the pyrosequencing data grouped the sequences into 24 different phyla. In general, Proteobacteria were the most dominant phyla and further analysis revealed the dominance of Deltaprotaobacteria, Alphaproteobacteria and Gammaproteobacteria within the sediments. To our knowledge, this is the first detailed analysis of the microbial diversity in the world''s largest mangrove sediment of Sundarabns.
DOI: 10.15468/dl.j8b6mm
title: Occurrence Download

description: A dataset containing 2057305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alopochen aegyptiaca)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2057305 records from 528 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011457-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tz7py4
title: Occurrence Download

description: A dataset containing 626491 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Leptocoma zeylonica",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 626491 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011432-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/zea7c9
title: Passive eDNA collection enhances aquatic biodiversity analysis, Australia (2019)

description: These data were collected to trial passive eDNA collection methods in tropical and temperate waters for the detection of fishes. The data were generated as part of a feasibility study within the Environomics Future Science Platform. The goal of the project was to develop low-cost, low-tech, easy to deploy methods for biomonitoring studies.
DOI: 10.15468/3ms69d
title: Polymetallic nodule field Targeted loci environmental

description: Abyssal sediments, polymetallic nodules, and water-column samples were collected from the UKSRL1 claim area within the Clarion-Clipperton fracture zone in the Pacific Ocean.
DOI: 10.15468/dl.8c2may
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago turbinata",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011515-250920141307145/datasets/export for details.
DOI: 10.15468/3p8e7b
title: Coral-associated bacteria demonstrate phylosymbiosis and cophylogeny

description: Scleractinian corals microbial symbionts influence host health, yet how these coral microbiomes assembled over evolution is not well understood. We survey bacterial and archaeal communities in phylogenetically diverse Australian corals representing more than 425 million years of diversification. We show that corals exhibit anatomical compartmentalization of the microbiome such that the coral surface mucus layer, tissue, and skeleton microbiomes show distinct modern microbial ecology and evolutionary assembly. In corals, these compartments differ greatly in microbial community composition, richness, and response to host vs. environmental drivers. We also find evidence of coral-microbe phylosymbiosis, in which coral microbiome composition and richness reflects coral phylogeny. Surprisingly, the coral skeleton represents the most biodiverse coral microbiome, and also shows the strongest evidence of phylosymbiosis. Together these results trace microbial symbiosis across anatomy during the evolution of a basal animal lineage.
DOI: 10.15468/dl.9we2rp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago turbinata",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011516-250920141307145/datasets/export for details.
DOI: 10.15468/yncjvl
title: Marine Sediment Targeted Locus

description: Marine sediment samples collected from the Bay of Fundy, New Brunswick.
DOI: 10.15468/dl.dc8psy
title: Occurrence Download

description: A dataset containing 72121 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhododendron ponticum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 72121 records from 326 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011438-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hhjstp
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Medicago turbinata",
 "Country is Netherlands",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011517-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/mufhte
title: Simulated crude oil seepage Caspian Sea Raw sequence reads

description: The response of the microbial community to a crude oil seepage simulated for 190 days under close-to-in situ conditions in a sediment core from Caspian Sea using a Sediment-Oil-Flow-Through (SOFT) system was studied by NGS sequencing. We hypothesize that specific taxa respond specifically to simulated crude oil seepage by an increase of their cell numbers resulting in a change of community composition.
DOI: 10.15468/t4hl9h
title: The study includes fungal genetic diversity assessment by ITS-1 next generation sequencing (NGS) analyses. The main the main experimental objects are soils of different classes, quality groups and also subjected to various agrotechnical treatments

description: The study included fungal genetic diversity assessment by ITS-1 next generation sequencing (NGS) analyses as well as the characterization of the catabolic potential of microbial communities (Biolog EcoPlates) in the soil under long-term monoculture of maize using different cultivation techniques. The results obtained from the ITS-1 NGS technique enabled to classify and correlate the fungi species or genus to the soil metabolome. The research methods used in this paper have contributed to a better understanding of genetic diversity and composition of the population of fungi in the soil under the influence of the changes that have occurred in the soil under long-term maize cultivation. In all cultivation techniques, thThis study has shown that: (1) fungal diversity was changed under the influence different cultivation techniques; (2) techniques of maize cultivation and season were an important factors that can influence the biochemical activity of soil. Maize cultivated in direct sowing did not cause negative changes in the fungal structure, even making it more stable during seasonal changes; (3) full tillage and crop rotation may change fungal community and soil function. e season had a great influence on the fungal genetic structure in the soil.
DOI: 10.34740/kaggle/dsv/13156947
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/w3b7dx
title: uncultured prokaryote Metagenome

description: In the present study, microbial communities ofsponges, Sediments and Seawater inhabitingcoral reef ecosystems were investigated usingbarcoded pyrosequencing of 16S rRNA geneamplicons. Our main goals were to compare thebacterial and archaeal richness and composition ofsponge species, sediment and seawaterinhabiting coral reef systems. FLX 454 titanium pyrosequencing study.
DOI: 10.15468/dl.vdhqfs
title: Occurrence Download

description: A dataset listing the 172 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is 中正路污水處理廠生態調查"
 ]
}

 The dataset's 172 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011483-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/osbi4e
title: Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms

description: Acute ecological impact of co-contamination of polycyclic aromatic hydrocarbons (PAHs) and heavy metals and their short-term interaction on diversity and composition of coastal benthic prokaryotes were unclear. We took pyrene (Pyr) and cadmium (Cd) as the representatives and mimicked an eight-week exposure of moderate and high levels of Pyr, Cd and their mixtures. 16S rRNA amplicon sequencing was used to investigate interaction of the contaminants in temporal succession of prokaryotes.
DOI: 10.15468/dl.5mh67a
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex rhynchophora"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011520-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/1aa9sz
title: Marine sediment metagenome ICM_FIS

description: Sands as microbial biodiversity hotspots: Investigating the effect of grain size and biofilm formation.
DOI: 10.5284/1135895
title: Images from a Desk-based Assessment, Historic Building Recording and Archaeological Monitoring at Higher Velly Farm, Hartland, Torridge, Devon, 2015-2016

description: This collection comprises images from a Desk-based Assessment, Historic Building Recording and Archaeological Monitoring at Higher Velly Farm, Hartland, Torridge, Devon. Work was undertaken by South West Archaeology Ltd between June 2015 and January 2016. These works were commissioned in order to establish the historic background, building phasing and nature of archaeological remains that may be affected by the conversion of the farm buildings and associated development works. Whilst Higher Velly Farm is not a listed building, the likely late medieval origin of the complex makes it of local significance, particularly with the survival of early fabrics within buildings B1 and B2. The primary function of building B1 was as a detached kitchen block, probably of late medieval date. This suggests that a reasonably high status house of this date was present nearby, the location of which is unknown. The majority of the surviving structures, however, are representative of a 19th/early 20th century rationalisation of the earlier building group.
DOI: 10.15468/dl.b5ndk2
title: Occurrence Download

description: A dataset containing 47961 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Allium sphaerocephalon)"
 ]
}

 The dataset includes 47961 records from 725 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011519-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89hf3a
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Kelp rafts in the Southern Ocean"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307463-200613084148143/datasets/export for details.
DOI: 10.15468/dl.km84cg
title: Occurrence Download

description: A dataset containing 46454 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ephemeroptera"
 ]
}

 The dataset includes 46454 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067964-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wpkgc0
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chinese Taipei",
 "TaxonKey is Rhabdophis swinhonis (Günther, 1868)"
 ]
}

 The dataset includes 45 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009855-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcsy9a
title: Occurrence Download

description: A dataset containing 56735 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Cuculidae"
 ]
}

 The dataset includes 56735 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400158-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxyk47
title: Occurrence Download

description: A dataset containing 175 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis mestrei Barbour & Ramsden, 1916"
 ]
}

 The dataset includes 175 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009855-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqn4w7
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argynnis vorax Butler, 1871",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 162 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067962-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbjhkd
title: Occurrence Download

description: A dataset containing 7637 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trogon bairdii Lawrence, 1868"
 ]
}

 The dataset includes 7637 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400169-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9sqzvm
title: Occurrence Download

description: A dataset containing 604 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ghana",
 "OccurrenceStatus is Present",
 "TaxonKey is Picathartes gymnocephalus (Temminck, 1825)"
 ]
}

 The dataset includes 604 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067965-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxbnhs
title: Occurrence Download

description: A dataset containing 324 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Picumnus cinnamomeus Wagler, 1829"
 ]
}

 The dataset includes 324 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009856-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.grgtsq
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erythranthe bridgesii (Benth.) G.L.Nesom"
 ]
}

 The dataset includes 65 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041742-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f5pk4r
title: Occurrence Download

description: A dataset containing 3229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoeurycea leprosa (Cope, 1869)"
 ]
}

 The dataset includes 3229 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009856-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tc4cb
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argynnis zenobia Leech, 1890",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 27 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067963-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgt8gb
title: Occurrence Download

description: A dataset containing 678325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Arecaceae"
 ]
}

 The dataset includes 678325 records from 416 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299617-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mx8syv
title: Occurrence Download

description: A dataset containing 462 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iphigenia indica (L.) A.Gray ex Kunth"
 ]
}

 The dataset includes 462 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009856-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emeqf6
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Boloria oscarus (Eversmann, 1844)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
}

 The dataset includes 36 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067971-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4tfbuq
title: Occurrence Download

description: A dataset containing 14230 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leiopicus medius (Linnaeus, 1758)"
 ]
}

 The dataset includes 14230 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0157207-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.