cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zky7kz
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018784-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15597582
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605d Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605d Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15597583
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250605d Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250605d Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.s5jq2d
title: Occurrence Download

description: A dataset containing 4207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Palicourea elata (Sw.) Borhidi"
 ]
}

 The dataset includes 4207 records from 126 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021943-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15597192
title: Hodge conjecture proof

description: This work addresses the Hodge Conjecture—one of the Clay Mathematics Institute's Millennium Prize Problems—by presenting a rigorous formulation and proposed resolution within the framework of complex algebraic geometry. The paper demonstrates that for any projective complex algebraic variety, every rational Hodge class is a linear combination of the classes of algebraic cycles. By leveraging advancements in Hodge theory, mixed motives, and derived category techniques, this approach constructs a coherent proof that links topological and algebraic properties of complex varieties. The argument is supported by a deep analysis of the Hodge structure on cohomology and its intersection with algebraic cycles, ensuring consistency with known results in both the Kähler and non-Kähler domains. This result stands as a milestone toward resolving the conjecture and has been prepared for formal peer review and recognition under the highest standards of mathematical rigor.
DOI: 10.5281/zenodo.15597193
title: Hodge conjecture proof

description: This work addresses the Hodge Conjecture—one of the Clay Mathematics Institute's Millennium Prize Problems—by presenting a rigorous formulation and proposed resolution within the framework of complex algebraic geometry. The paper demonstrates that for any projective complex algebraic variety, every rational Hodge class is a linear combination of the classes of algebraic cycles. By leveraging advancements in Hodge theory, mixed motives, and derived category techniques, this approach constructs a coherent proof that links topological and algebraic properties of complex varieties. The argument is supported by a deep analysis of the Hodge structure on cohomology and its intersection with algebraic cycles, ensuring consistency with known results in both the Kähler and non-Kähler domains. This result stands as a milestone toward resolving the conjecture and has been prepared for formal peer review and recognition under the highest standards of mathematical rigor.
DOI: 10.1594/pangaea.909283
title: Basic and other measurements of radiation at station Observatory of Huancayo (2018-01)
DOI: 10.1594/pangaea.668059
title: Swath sonar bathymetry during POLARSTERN cruise ANT-XVIII/4 (PS58) with links to multibeam raw data files

description: Contact mailto:infobathy@awi.de for data access.
DOI: 10.1594/pangaea.909295
title: Basic and other measurements of radiation at station Observatory of Huancayo (2018-10)
DOI: 10.1594/pangaea.909285
title: Basic and other measurements of radiation at station Observatory of Huancayo (2018-03)
DOI: 10.1594/pangaea.909297
title: Basic and other measurements of radiation at station Observatory of Huancayo (2018-11)
DOI: 10.1594/pangaea.823104
title: (Table 1) Composition of paraffin hydrocarbons at DSDP Site 56-434

description: Geochemical investigation of 18 samples of sediments from Site 434 involved determining the content of organic carbon, of bitumoid A (The chloroform A-chl and alcohol-benzene A-alb extracts) and its various fractions, and of individual hydrocarbons as well as the structural group composition of resins. We identified certain samples that differed sharply from the rest by their increased bitumen content and relatively low molecular hydrocarbons and by the fact that their resinous components were more neutral and aliphatic in composition. The distribution of bitumoid and its components seems to reflect migration processes in operation during the early stages of the transformation of organic matter.
description: &lt;1 = trace.
description: Supplement to: Geodekyan, Artyom A; Chernova, Tatyana G; Trotsyuk, V Ya; Verkhovskaya, Z I; Bokovoy, A P (1980): Chemical and bituminological studies from Holes 434, 434A, and 434B, Deep Sea Drilling Project. In: Scientific Party, Initial Reports of the Deep Sea Drilling Project, 56/57 (eds.), Initial Reports of the Deep Sea Drilling Project (U.S. Govt. Printing Office), 56-57, 1331-1334
DOI: 10.1594/pangaea.909280
title: Basic and other measurements of radiation at station Observatory of Huancayo (2017-09)
DOI: 10.1594/pangaea.351141
title: Swath sonar bathymetry during POLARSTERN cruise ARK-XIX/4a (PS64) with links to multibeam raw data files

description: Contact mailto:infobathy@awi.de for data access.
DOI: 10.1594/pangaea.909302
title: Basic and other measurements of radiation at station Observatory of Huancayo (2019-01)
DOI: 10.1594/pangaea.701696
title: Swath sonar bathymetry during POLARSTERN cruise ANT-XIX/5 (PS61) with links to multibeam raw data files

description: Multibeam data were measured during R/V Polarstern cruise ANT-XIX/5 along track lines of approximately 4000 NM total length in the Scotia Sea. Data were achieved along the Scotia Arc from Burdwood Bank to King George Island. A multibeam box survey was conducted at the southern part of the Discovery Rise, located at 50°55'S / 35°30'W and covering an area of 90 x 15 NM. A bathymetric survey of 25 x 60 NM was carried out at the eastern part of the South Shetland Trench and its intersection with the Shackleton Fracture Zone, continuing multibeam data from former expeditions. The multibeam sonar system Hydrosweep DS-2 was operated using 59 beams and 90° aperture angle. The refraction correction was achieved utilizing the system's own cross fan calibration. The quality of data might be reduced during bad weather periods or adverse sea ice conditions. The dataset contains raw data that are not processed and thus may contain errors and blunders in depth and position.
description: The raw multibeam sonar data in SURF format are compressed as TAR archive with GZIP. One dataset contains a measurement period not exceeding eight hours. SURF data files can be processed using the software packages CARIS HIPS/SIPS or with the open source software package MB-System (http://www.ldeo.columbia.edu/res/pi/MB-System/). The source code for an application programming interface (API) to read and write SURF data is released by the Hydrosweep manufacturer Atlas Hydrographic, Bremen, and published under the GNU GPL. Contact mailto:infobathy@awi.de for data access.
DOI: 10.1594/pangaea.909290
title: Basic and other measurements of radiation at station Observatory of Huancayo (2018-07)
DOI: 10.1594/pangaea.615996
title: Swath sonar bathymetry during POLARSTERN cruise ANT-XVIII/5a (PS58) with links to multibeam raw data files

description: Contact mailto:infobathy@awi.de for data access.
DOI: 10.1594/pangaea.909282
title: Basic and other measurements of radiation at station Observatory of Huancayo (2017-12)
DOI: 10.1594/pangaea.909281
title: Basic and other measurements of radiation at station Observatory of Huancayo (2017-10)
DOI: 10.15468/dl.vcbqtd
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.0251 -31.3959,30.5701 -30.7329,30.5701 -28.5786,25.5395 -28.5786,25.5395 -32.9007,28.2048 -32.9007,28.5753 -32.6569,29.4902 -31.7517,30.0251 -31.3959))"
 ]
}

 The dataset includes 271 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022102-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13757098
title: GraphaRNA dataset and model

description: Graph Neural Network and Diffusion Model for Modeling RNA Interatomic Interactions

This repository contains the datasets and the pre-trained model associated with GraphaRNA, a diffusion-based graph neural network for RNA 3D structure prediction. The data is organized into multiple files, each providing key resources for training, validation, and testing the model, as well as a pre-trained model ready for inference.

Data Overview:





rRNA_tRNA.tar.gz:



Contains raw PDB files with extracted descriptors from ribosomal RNA (rRNA) and transfer RNA (tRNA) structures.





non_rRNA_tRNA.tar.gz:



Contains raw PDB files with extracted descriptors from RNA molecules that are non-rRNA and non-tRNA. These serve as a separate test set.





train-pkl.tar.gz:



Contains the filtered and preprocessed pickle files for the training set, derived from the rRNA_tRNA dataset. These files are used to train GraphaRNA.





val-pkl.tar.gz:



Contains the validation set, which is a subset of the training data from train-pkl.tar.gz.





test-pkl.tar.gz:



Contains the preprocessed pickle files for the test set, derived from the non_rRNA_tRNA dataset. This set includes RNA descriptors that are not rRNA or tRNA, providing a challenging test scenario.





model_epoch_800.tar.gz:



Contains the pre-trained GraphaRNA model after 800 epochs of training on the train-pkl dataset. This model is ready for inference and evaluation.



 all-outputs.txt:



Contains basic metadata about all descriptors: name of file, number of segments, number of nucleotides, sequence of each segment, and positions of segments in original PDB files.




Use of Data and Model:



The raw PDB files can be used for RNA descriptor extraction, while the pickle files are preprocessed for direct use in training, validation, and testing workflows.

The GraphaRNA model in model_epoch_800.tar.gz can be used to run inference on new RNA data or to reproduce results from the associated paper.


How to Use:



Training: The train-pkl.tar.gz contains data that can be used to retrain the GraphaRNA model from scratch.

Validation: The val-pkl.tar.gz can be used to validate the model during or after training.

Testing: Use the test-pkl.tar.gz to evaluate the model's performance on RNA types that it wasn't trained on (non-rRNA and non-tRNA).

Inference: The model_epoch_800.tar.gz is ready for inference on new RNA sequences.


Acknowledgments:

If you use this dataset or the pre-trained model in your research, please cite the associated paper (linked here once published).
DOI: 10.15468/dl.2zxvsz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobarbus burgi (Boulenger, 1911)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021925-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bvf428
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Labeo umbratus (Smith, 1841)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022013-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15600237
title: Syracuse problem proof

description: This paper resolves the Syracuse Problem, an extension of the well-known 3n + 1 (Collatz) conjecture. The work demonstrates that for any positive integer n, the iterative process defined by n → n/2 (if even) or n → 3n + 1 (if odd) eventually reaches 1. Using parity class decomposition, bounded descent filters, and trajectory mapping, the proof excludes the existence of divergent paths. Symbolic and computational verifications confirm universal convergence across all integer domains. This result provides a robust theoretical framework supporting one of the most famous recursive problems in number theory.
DOI: 10.5281/zenodo.15600238
title: Syracuse problem proof

description: This paper resolves the Syracuse Problem, an extension of the well-known 3n + 1 (Collatz) conjecture. The work demonstrates that for any positive integer n, the iterative process defined by n → n/2 (if even) or n → 3n + 1 (if odd) eventually reaches 1. Using parity class decomposition, bounded descent filters, and trajectory mapping, the proof excludes the existence of divergent paths. Symbolic and computational verifications confirm universal convergence across all integer domains. This result provides a robust theoretical framework supporting one of the most famous recursive problems in number theory.
DOI: 10.15468/dl.h3wahm
title: Occurrence Download

description: A dataset containing 66816 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Achyranthes aspera L., Asplenium longissimum Blume, Asplenium macrophyllum Sw., Asplenium nidus L., Boerhavia repens L., Canavalia cathartica Thouars, Dactyloctenium ctenoides (Steud.) Bosser, Euphorbia stoddartii Fosberg, Ipomoea violacea L., Lagrezia micrantha (Baker) Schinz, Lepturus repens (G.Forst.) R.Br., Portulaca mauritiensis Poelln., Pteris tripartita Sw., Scaevola taccada (Gaertn.) Roxb., Sida pusilla Cav., Stenotaphrum dimidiatum (L.) Brongn., Stenotaphrum micranthum (Desv.) C.E.Hubb., Triumfetta procumbens G.Forst.)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 66816 records from 797 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021965-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21954/ou.rd.29994607.v1
title: REDEFINE (UK): Interview with the head P21 of RAD team of GLA (2nd)

description: This document forms part of the REDEFINE research project (ERC Grant No. 885475), funded by the European Research Council. REDEFINE focuses on the dynamics and effects of China’s large-scale infrastructure investments in Europe, with a focus on Germany, Greece, Hungary, and the UK. Through multi-sited fieldwork and interdisciplinary analysis, the project seeks to understand the evolving relations between China and Europe and to assess what this means for politics, economic growth and development more broadly.This anonymised interview transcript presents a semi-structured interview conducted the head P21 of RAD team of GLA (2<sup>nd</sup>). The conversation contributes to REDEFINE’s case study of ABP’s investment in Royal Albert Dock. All identifying details have been removed, and informed consent for participation and data use was obtained.
DOI: 10.21954/ou.rd.29994607
title: REDEFINE (UK): Interview with the head P21 of RAD team of GLA (2nd)

description: This document forms part of the REDEFINE research project (ERC Grant No. 885475), funded by the European Research Council. REDEFINE focuses on the dynamics and effects of China’s large-scale infrastructure investments in Europe, with a focus on Germany, Greece, Hungary, and the UK. Through multi-sited fieldwork and interdisciplinary analysis, the project seeks to understand the evolving relations between China and Europe and to assess what this means for politics, economic growth and development more broadly.This anonymised interview transcript presents a semi-structured interview conducted the head P21 of RAD team of GLA (2<sup>nd</sup>). The conversation contributes to REDEFINE’s case study of ABP’s investment in Royal Albert Dock. All identifying details have been removed, and informed consent for participation and data use was obtained.
DOI: 10.34740/kaggle/dsv/12885583
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.23zfyg
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "Geometry POLYGON ((-94.85175583\t16.46926027, -94.85175583\t16.69908919, -94.57596113\t16.69908919, -94.57596113\t16.46926027, -94.85175583\t16.46926027))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 151 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021545-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/12065329
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.15597679
title: CosMx Spatial Transcriptomics Dataset of Human Lung Explants (Uninfected vs. Alpha Strain)

description: This dataset contains CosMx spatial transcriptomics data derived from human lung explants from a single patient, focusing on comparisons between uninfected samples and samples infected with the Alpha variant of SARS-CoV-2. The dataset contains transcript detections for 1000 genes across multiple fields-of-view (FOVs).

Files included:



Casp8_genes.csvContains the list of 42 prioritized genes categorized into four groups. 



CosMx_hlc_total_detection_per_fov_patient1.csvProvides total gene detections per FOV for the uninfected and Alpha strain samples from patient 1. Used for normalization purposes.




CosMx_hlc_Uninfected_Alpha_patient1_transcript.csvRaw transcript detection for each gene within individual FOVs, separately indicated for uninfected and Alpha strain samples. These data were normalized to account for differences in sequencing depth across FOVs.




casp8_CosMx_hlc_heatmap.RR script used to generate heatmaps of normalized gene expression data using the ComplexHeatmap package (version 2.24.0) in R (version 4.5.0). It includes normalization steps and visualization code.
DOI: 10.5281/zenodo.15597680
title: CosMx Spatial Transcriptomics Dataset of Human Lung Explants (Uninfected vs. Alpha Strain)

description: This dataset contains CosMx spatial transcriptomics data derived from human lung explants from a single patient, focusing on comparisons between uninfected samples and samples infected with the Alpha variant of SARS-CoV-2. The dataset contains transcript detections for 1000 genes across multiple fields-of-view (FOVs).

Files included:



Casp8_genes.csvContains the list of 42 prioritized genes categorized into four groups. 



CosMx_hlc_total_detection_per_fov_patient1.csvProvides total gene detections per FOV for the uninfected and Alpha strain samples from patient 1. Used for normalization purposes.




CosMx_hlc_Uninfected_Alpha_patient1_transcript.csvRaw transcript detection for each gene within individual FOVs, separately indicated for uninfected and Alpha strain samples. These data were normalized to account for differences in sequencing depth across FOVs.




casp8_CosMx_hlc_heatmap.RR script used to generate heatmaps of normalized gene expression data using the ComplexHeatmap package (version 2.24.0) in R (version 4.5.0). It includes normalization steps and visualization code.
DOI: 10.5281/zenodo.15596480
title: 1000 Genomes Project hg38, phased, biallelic, normalized

description: Pre-processed genotypes from the 1000 Genomes Project. Starting from the per-chromosome phased VCFs found here:



left-align & normalize against hg38, atomize, and split multiallelics using bcftools

concatenate all chromosomes together

convert to PLINK 2 format, compressing the PVAR file with zstd to be compatible with PLINK 2

compress the PGEN file with xz
DOI: 10.15468/dl.ba7zah
title: Occurrence Download

description: A dataset containing 1410 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dipsosaurus dorsalis dorsalis"
 ]
}

 The dataset includes 1410 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021546-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xt5awk
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-76.96914 -12.06587,-76.96919 -12.0672,-76.96798 -12.06605,-76.9669 -12.06589,-76.96519 -12.06534,-76.9629 -12.06439,-76.96279 -12.06405,-76.96047 -12.06347,-76.96111 -12.0625,-76.96509 -12.06383,-76.96914 -12.06587))"
 ]
}

 The dataset includes 48 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021547-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5msuzp
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chiroptera",
 "Geometry POLYGON ((-94.85175583\t16.46926027, -94.85175583\t16.69908919, -94.57596113\t16.69908919, -94.57596113\t16.46926027, -94.85175583\t16.46926027))",
 "Year is greater than or equal to 1900",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil)"
 ]
 }
 }
 ]
}

 The dataset includes 151 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021548-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.