cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7573527
title: diFUME eddy covariance dataset

description: Net CO2 flux (FC) time-series and the respective random error (RE) estimations at 30 min time step of the period 2018 - 2020 from two urban eddy covariance sites in the center of Basel. Data are produced using the EddyPro® Software v7.0.6 (LI-COR Inc.). The main processing steps include axis rotation for tilt correction using the double rotation method, linear detrending to extract turbulent fluctuations, covariance maximization for time-lag compensation between the gas analyser and the sonic anemometer and density fluctuation compensation. Spectral corrections are also applied to flux estimates for low and high frequency losses. Quality flagging is performed according to steady state and integral turbulence characteristics tests  based on the 3-point flagging system of Mauder and Foken. Flux random uncertainty estimation is performed according to the method of Finkelstein and Sims (2001). The time-series are filtered according to multiple criteria to avoid problematic values.


 


Data format: comma separated values (csv)


Time step: 30 min


 



	
		
			
			
Station acronym
			
			
			
Geographic location
			
			
			
Sensor height (m a.g.l.)
			
			
			
Sensor models (sonic anemometer, gas analyser)
			
			
			
Sonic azimuth (o)
			
			
			
Acquisition frequency (Hz)
			
		
		
			
			
BKLI
			
			
			
47.56173 °N, 7.58049 °E
			
			
			
39
			
			
			
HS-100 (Gill Instruments Ltd.),

			
LI-7500 (LI-COR Inc.)
			
			
			
0
			
			
			
20
			
		
		
			
			
BAES
			
			
			
47.55123 °N, 7.59560 °E
			
			
			
41
			
			
			
CSAT3 (Campbell Scientific Inc.), LI-7500 (LI-COR Inc.)
			
			
			
340
			
			
			
20
DOI: 10.5281/zenodo.7573528
title: diFUME eddy covariance dataset

description: Net CO2 flux (FC) time-series and the respective random error (RE) estimations at 30 min time step of the period 2018 - 2020 from two urban eddy covariance sites in the center of Basel. Data are produced using the EddyPro® Software v7.0.6 (LI-COR Inc.). The main processing steps include axis rotation for tilt correction using the double rotation method, linear detrending to extract turbulent fluctuations, covariance maximization for time-lag compensation between the gas analyser and the sonic anemometer and density fluctuation compensation. Spectral corrections are also applied to flux estimates for low and high frequency losses. Quality flagging is performed according to steady state and integral turbulence characteristics tests  based on the 3-point flagging system of Mauder and Foken. Flux random uncertainty estimation is performed according to the method of Finkelstein and Sims (2001). The time-series are filtered according to multiple criteria to avoid problematic values.


 


Data format: comma separated values (csv)


Time step: 30 min


 



	
		
			
			
Station acronym
			
			
			
Geographic location
			
			
			
Sensor height (m a.g.l.)
			
			
			
Sensor models (sonic anemometer, gas analyser)
			
			
			
Sonic azimuth (o)
			
			
			
Acquisition frequency (Hz)
			
		
		
			
			
BKLI
			
			
			
47.56173 °N, 7.58049 °E
			
			
			
39
			
			
			
HS-100 (Gill Instruments Ltd.),

			
LI-7500 (LI-COR Inc.)
			
			
			
0
			
			
			
20
			
		
		
			
			
BAES
			
			
			
47.55123 °N, 7.59560 °E
			
			
			
41
			
			
			
CSAT3 (Campbell Scientific Inc.), LI-7500 (LI-COR Inc.)
			
			
			
340
			
			
			
20
DOI: 10.5281/zenodo.10548681
title: Cardiac Motion

description: This collection of segmentations was derived from cine-MRI images captured during an end-diastolic to end-systolic interval. Each file represents a distinct time step, such as biV-time.vtk
DOI: 10.5281/zenodo.10548682
title: Cardiac Motion

description: This collection of segmentations was derived from cine-MRI images captured during an end-diastolic to end-systolic interval. Each file represents a distinct time step, such as biV-time.vtk
DOI: 10.5281/zenodo.10548808
title: Segmentation Uncertainty

description: This data includes: 



Torso.zip including torso geometry and electrode positions

vent-1..10.vtk the original segmentations corresponding to one single patient

shape-models.zip 261 shape models derived from the original segmentations 

StimProtocols coordinates of the stimulation sites

EikonalSim.zip eikonal simulations on shape models % stimProtocol

pseudoECGs_ShapeModels.zip computed body surface potentials for each shape model % stimProtocol
DOI: 10.5281/zenodo.10548809
title: Segmentation Uncertainty

description: This data includes: 



Torso.zip including torso geometry and electrode positions

vent-1..10.vtk the original segmentations corresponding to one single patient

shape-models.zip 261 shape models derived from the original segmentations 

StimProtocols coordinates of the stimulation sites

EikonalSim.zip eikonal simulations on shape models % stimProtocol

pseudoECGs_ShapeModels.zip computed body surface potentials for each shape model % stimProtocol
DOI: 10.12754/data-2024-0004
title: Geersen_2024_SideScan

description: Side-scan sonar data acquired with the research vessel Elisabeth Mann Borgese in 2020, and processed to a mosaic resolution of 1 m.
DOI: 10.12754/data-2024-0005
title: Geersen_2024_YoldiaLowstand

description: The Yoldia to early Ancylus Lake lowstand land surface reconstructed from dozens of sediment echosounder lines retrieved from seismic archives of Kiel University (CAU) and the Leibniz Institute for Baltic Sea Research Warnemünde (IOW). The data has been gridded to 350 * 350 m resolution.
DOI: 10.24378/exe.4985
title: Acoustic Metasurfaces with Frieze Symmetries (dataset)

description: Frieze patterns follow a set of tiling instructions including reflection, rotation, and translation, and tile the infinite strip. Many metamaterials function due to the underlying symmetry, and its strategic breaking, of their constituent sub-structures that allow tailoring of the dispersion of modes supported by the structure. We design, simulate, and experimentally characterize seven one-dimensional acoustic metasurfaces whose unit cells each belong to one of the distinct Frieze groups.
description: This is the dataset used for the Moore et al. (2024) article "Acoustic Metasurfaces with Frieze Symmetries" published in the Journal of the Acoustical Society of America.
description: The article associated with this dataset is available in ORE at: http://hdl.handle.net/10871/135102
DOI: 10.7924/r4fx7gq46
title: Data from: Computational Models of Compound Nerve Action Potentials: Efficient Filter-Based Methods to Quantify Effects of Tissue Conductivities, Conduction Distance, and Nerve Fiber Parameters

description: Background: Peripheral nerve recordings can enhance the efficacy of neurostimulation therapies by providing a feedback signal to adjust stimulation settings for greater efficacy or reduced side effects. Computational models can accelerate the development of interfaces with high signal-to-noise ratio and selective recording. However, validation and tuning of model outputs against in vivo recordings remains computationally prohibitive due to the large number of fibers in a nerve. 

Methods: We designed and implemented highly efficient modeling methods for simulating electrically evoked compound nerve action potential (CNAP) signals. The method simulated a subset of fiber diameters present in the nerve using NEURON, interpolated action potential templates across fiber diameters, and filtered the templates with a weighting function derived from fiber-specific conduction velocity and electromagnetic reciprocity outputs of a volume conductor model. We applied the methods to simulate CNAPs from rat cervical vagus nerve.

Results: Brute force simulation of a rat vagal CNAP with all 1,759 myelinated and 13,283 unmyelinated fibers in NEURON required 286 and 15,860 CPU hours, respectively, while filtering interpolated templates required 30 and 38 seconds on a desktop computer while maintaining accuracy. Modeled CNAP amplitude could vary by over two orders of magnitude depending on tissue conductivities and cuff opening within experimentally relevant ranges. Conduction distance and fiber diameter distribution also strongly influenced the modeled CNAP amplitude, shape, and latency. Modeled and in vivo signals had comparable shape, amplitude, and latency for myelinated fibers but not for unmyelinated fibers. 

Conclusions: Highly efficient methods of modeling neural recordings quantified the large impact that tissue properties, conduction distance, and nerve fiber parameters have on CNAPs. These methods expand the computational accessibility of neural recording models, enable efficient model tuning for validation, and facilitate the design of novel recording interfaces for neurostimulation feedback and understanding physiological systems.
DOI: 10.6084/m9.figshare.25047296
title: Comparison data for freshwater snails hosts of bilharzia and liver flukes collected by citizen scientists and an expert in the Lake Albert region of Uganda

description: This data was generated in the ATRAP (<b>A</b>ction <b>T</b>owards <b>R</b>educing <b>A</b>quatic Snail-borne <b>P</b>arasitic diseases) project in western Uganda. ATRAP employed a novel citizen science project in monitoring snail intermediate hosts of <i>Schistosoma </i>and <i>Fasciola </i>flukes that affect human and livestock health. Twenty-five citizen scientists monitored over 76 sites and reported weekly data on snail presence and human activities at the sites. To validate the quality of weekly data collected by citizens, an expert scientist monitored monthly the same sites using the same protocol used by the citizens.This dataset is a subset of the data consisting of matched data per site not more than seven days apart between the expert and citizen sampling. This data was used for analysis in the comparison of data quality of the citizen scientists using expert data as a yardstick.
DOI: 10.5281/zenodo.10534942
title: Data set of Structural Features and a Few Selected Scattering Profiles and Structures Prepared for CREASE-2D Method.

description: Three files are provided in this repository.



CREASE2D_Complete_Dataset_of_Structural_Features_3000Samples.csv contains a table of all 3000 sample IDs with their corresponding structural features.

Selected_2D_Scattering_Intensity_Profiles.zip contains 2D scattering profiles for selected samples as listed in Table 1 of the original manuscript. The sample IDs are 31, 332, 2941, 1770, 1172, 2291, 949, 40, 585, 172, and 2495. The scattering intensity is provided in a tabular format with 501 rows and 181 columns. The rows represent variation in scattering intensity due to the magnitude of the scattering vector q, which is varied in logarithmically from 10^{-2} to 10^{3} to obtain 501 values. The columns variation in scattering intensity due to the azimuthal angle theta, which is varied linearly from 0 to 180 degrees to obtain 181 values.

Selected_Structures.zip contains the corresponding structure files of the spheroidal particles in the LAMMPS dump file format. This file is organized to have tabulated entries with the following fields: id, type, x, y, z, a, b, c, qw, qx, qy, qz. Here:



 id assigns a unique index to each particle. 

type is not used, and is always set to 1

x, y, z are the coordinates of each spheroidal particle.

a, b, c are the semi-axes lengths of the spheroidal particles. Here a and b are identical, due to the particle being a spheroid.

qw, qx, qy, qz are the values of the unit quaternion that are used to define the orientation of the spheroidal particles.
DOI: 10.5281/zenodo.10534943
title: Data set of Structural Features and a Few Selected Scattering Profiles and Structures Prepared for CREASE-2D Method.

description: Three files are provided in this repository.



CREASE2D_Complete_Dataset_of_Structural_Features_3000Samples.csv contains a table of all 3000 sample IDs with their corresponding structural features.

Selected_2D_Scattering_Intensity_Profiles.zip contains 2D scattering profiles for selected samples as listed in Table 1 of the original manuscript. The sample IDs are 31, 332, 2941, 1770, 1172, 2291, 949, 40, 585, 172, and 2495. The scattering intensity is provided in a tabular format with 501 rows and 181 columns. The rows represent variation in scattering intensity due to the magnitude of the scattering vector q, which is varied in logarithmically from 10^{-2} to 10^{3} to obtain 501 values. The columns variation in scattering intensity due to the azimuthal angle theta, which is varied linearly from 0 to 180 degrees to obtain 181 values.

Selected_Structures.zip contains the corresponding structure files of the spheroidal particles in the LAMMPS dump file format. This file is organized to have tabulated entries with the following fields: id, type, x, y, z, a, b, c, qw, qx, qy, qz. Here:



 id assigns a unique index to each particle. 

type is not used, and is always set to 1

x, y, z are the coordinates of each spheroidal particle.

a, b, c are the semi-axes lengths of the spheroidal particles. Here a and b are identical, due to the particle being a spheroid.

qw, qx, qy, qz are the values of the unit quaternion that are used to define the orientation of the spheroidal particles.
DOI: 10.6084/m9.figshare.25048061
title: a data for manuscript : IC and TFP

description: The defines total factor productivity as a function of a nation’s intellectual capital. By developing a simple model, it explored the long-run relationship between intellectual capital and total factor productivity.
DOI: 10.34740/kaggle/dsv/7464733
title: Mahanagar Yatayat Transport Dataset
DOI: 10.34740/kaggle/dsv/7464750
title: MoviesDatasets
DOI: 10.34740/kaggle/dsv/7464768
title: Moon Landings
DOI: 10.5281/zenodo.10556962
title: Risk assessments of virtual interactions on Saudi families

description: This is a datasets for this study
DOI: 10.5281/zenodo.10556963
title: Risk assessments of virtual interactions on Saudi families

description: This is a datasets for this study
DOI: 10.34620/dadosipb/wt6tpz
title: Base de dados de dieta alimentar, Angola /Database of food diet, Angola

description: Base de dados de respostas aos questionários de dieta alimentar aplicados a famílias do Cuanza Sul, Angola /Database of the food diet questionnaire applied to families from the province of Cuanza Sul, Angola
DOI: 10.5281/zenodo.10556860
title: Trained models and data for "Identifying Three-Dimensional Radiative Patterns Associated with Early Tropical Cyclone Intensification"

description: This compressed file contains all the processed time series, trained models, and post-processed longwave and shortwave fields that are used to create the main results in "Identifying Three-Dimensional Radiative Patterns Associated with Early Tropical Cyclone Intensification".

The processed time series are used as inputs to the machine learning model. The true intensification rates are also included in the file for model evaluation purposes.

The post-processed longwave and shortwave fields in radial coordinates are big. To ensure the file size is within the upload size limit, we only provide the radiation fields for the two Haiyan ensemble members used in the paper's main text. The processed fields for Maria and the other Haiyan ensemble members are available upon request.
DOI: 10.5281/zenodo.10556861
title: Trained models and data for "Identifying Three-Dimensional Radiative Patterns Associated with Early Tropical Cyclone Intensification"

description: This compressed file contains all the processed time series, trained models, and post-processed longwave and shortwave fields that are used to create the main results in "Identifying Three-Dimensional Radiative Patterns Associated with Early Tropical Cyclone Intensification".

The processed time series are used as inputs to the machine learning model. The true intensification rates are also included in the file for model evaluation purposes.

The post-processed longwave and shortwave fields in radial coordinates are big. To ensure the file size is within the upload size limit, we only provide the radiation fields for the two Haiyan ensemble members used in the paper's main text. The processed fields for Maria and the other Haiyan ensemble members are available upon request.
DOI: 10.34620/dadosipb/nub2ma
title: Base de dados de dieta alimentar, Moçambique /Database of food diet, Mozambique

description: Base de dados de respostas aos questionários de dieta alimentar aplicados a famílias das províncias de Gaza e Inhambane, Moçambique / Database of the food diet questionnaire applied to families from the provinces of Gaza and Inhambane, Mozambique
DOI: 10.5281/zenodo.10556984
title: Dataset of Outcome of video laryngoscopy versus direct laryngoscopy in ED
DOI: 10.5281/zenodo.10556995
title: Statistical methods_ results and sample size for each figure

description:  This table contains detailed data such as statistical analysis method, inspection method, 95%CI, P-value and size of figure 1~5.
DOI: 10.5281/zenodo.10556996
title: Statistical methods_ results and sample size for each figure

description:  This table contains detailed data such as statistical analysis method, inspection method, 95%CI, P-value and size of figure 1~5.
DOI: 10.15151/esrf-es-1431868351
title: Protein structure-based design of chemical probes for the m6A-mRNA reader YTHDC1

description: N6-methyladenosine (m6A), the most prevalent internal modification in eukaryotic messenger RNA, plays a crucial role in numerous biological processes. m6A reader proteins, which recognize and interpret these modifications, serve as key mediators in epitranscriptomic regulation. 
Using computational modeling, structure-based drug design, and high-throughput screening techniques we have identified lead compounds against the modulators of m6A. With this proposal we aim to further develop our lead compounds into highly potent and selective chemical probes targeting the nuclear m6A-mRNA reader protein YTHDC1. These chemical probes illuminate protein-RNA interactions, revealing epitranscriptomic regulation mechanisms. By manipulating m6A reader proteins, they enable targeted therapies for diseases driven by dysregulated epitranscriptomic processes.
DOI: 10.6084/m9.figshare.24470983
title: The Burden and Correlates of Waterpipe (Hookah) Smoking among Adolescents and Youth: A Systematic Review

description: This systematic review evaluated the available medical literature on the prevalence and trends of waterpipe tobacco smoking among adolescents and youth in jurisdictionally representative populations. PubMed, Embase, and Scopus were searched for relevant studies from inception until 31 December 2022 that reported the burden of waterpipe smoking among adolescents and youth (10–24 years of age). We extracted qualitative data on the demographic characteristics, burden, and correlates of waterpipe smoking (PROSPERO ID: CRD42022310982). A total of 2,197 articles were screened and 62 were included in the analysis. The majority (29) of the studies was from the United States of America and there were no studies from the south-east Asian region. The prevalence of ever waterpipe smoking among the 10–24 years age group was noted to be 18.16% (95% CI, 18.03–18.29). The prevalence of current (30-day) waterpipe smoking was 6.43% (95% CI, 6.34–6.50). The age of initiation of waterpipe smoking was variable. The prevalence of waterpipe smoking was higher among males, among those who belong to the high- and middle-income groups, and among university students. The common risk factors of waterpipe smoking included cigarette smoking, alcohol, and substance use. Waterpipe smoking resulted in increased susceptibility to the use of conventional forms of tobacco (e.g. smoking) among those who were never smokers. Waterpipe smoking usage was significantly high among adolescents and young adults. Developing regulatory guidelines for water-pipe smoking, surveillance of its use, intervention, and specific policy frameworks may be considered a public health priority.
DOI: 10.6084/m9.figshare.24470983.v1
title: The Burden and Correlates of Waterpipe (Hookah) Smoking among Adolescents and Youth: A Systematic Review

description: This systematic review evaluated the available medical literature on the prevalence and trends of waterpipe tobacco smoking among adolescents and youth in jurisdictionally representative populations. PubMed, Embase, and Scopus were searched for relevant studies from inception until 31 December 2022 that reported the burden of waterpipe smoking among adolescents and youth (10–24 years of age). We extracted qualitative data on the demographic characteristics, burden, and correlates of waterpipe smoking (PROSPERO ID: CRD42022310982). A total of 2,197 articles were screened and 62 were included in the analysis. The majority (29) of the studies was from the United States of America and there were no studies from the south-east Asian region. The prevalence of ever waterpipe smoking among the 10–24 years age group was noted to be 18.16% (95% CI, 18.03–18.29). The prevalence of current (30-day) waterpipe smoking was 6.43% (95% CI, 6.34–6.50). The age of initiation of waterpipe smoking was variable. The prevalence of waterpipe smoking was higher among males, among those who belong to the high- and middle-income groups, and among university students. The common risk factors of waterpipe smoking included cigarette smoking, alcohol, and substance use. Waterpipe smoking resulted in increased susceptibility to the use of conventional forms of tobacco (e.g. smoking) among those who were never smokers. Waterpipe smoking usage was significantly high among adolescents and young adults. Developing regulatory guidelines for water-pipe smoking, surveillance of its use, intervention, and specific policy frameworks may be considered a public health priority.
DOI: 10.18743/data.00000328
title: Disaggregation assay

description: Values for graphs of Thioflavin T fluorescence vs time to detect amyloid fibre disassembly the Hsc70 chaperone system
description: Fluorescence recordings
DOI: 10.5281/zenodo.10557048
title: Pseudonymized Raw Data for "Investigating Organizational Events in Open-Source Software Projects"

description: Pseudonymized raw data (i.e., commit data, issue data, and mail data for 13 GitHub projects, as well as the events.list files that denote the time stamps of the different organizational events) that has been used as input for the study "Investigating Organizational Events in Open-Source Software Projects".

The pseudonymized raw data has been extracted via the tools Codeface, GitHubWrapper, nntp2mbox, BoDeGHa, and codeface-extraction (and additional manual corrections after sanity checks).
DOI: 10.5281/zenodo.10557049
title: Pseudonymized Raw Data for "Investigating Organizational Events in Open-Source Software Projects"

description: Pseudonymized raw data (i.e., commit data, issue data, and mail data for 13 GitHub projects, as well as the events.list files that denote the time stamps of the different organizational events) that has been used as input for the study "Investigating Organizational Events in Open-Source Software Projects".

The pseudonymized raw data has been extracted via the tools Codeface, GitHubWrapper, nntp2mbox, BoDeGHa, and codeface-extraction (and additional manual corrections after sanity checks).
DOI: 10.18743/data.00000326
title: SDS gels of amyloid fibre-chaperone complexes

description: Metadata in a spreadsheet
Photos of the gels used for binding assays
description: Preparations of in vitro assembled alpha synuclein amyloid fibres were mixed with Hsc70, DNAJB1, Apg2 and ATP in varying combinations, then centrifuged to separate pellet and supernatant fractions, which were analysed by polyacrylamide gel electrophoresis to determine how much of the Hsc70 remained in the supernatant or pelleted with the fibres under different conditions.