cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8g58cy
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonopsis sterletus (Gilbert, 1898)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 30 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038714-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/e4ny39
title: Herbier Maire (Mycotheca Boreali-Africana, TL 114)

description: Plant parasitic fungi (Mycotheca Boreali-Africana), collected in Algeria between 1909 and 1914, divided into 2 binders or 175 specimens.
René Charles Joseph Maire was born on May 29, 1878 in Lons-le-Saunier (Jura), and died on November 24, 1949 (aged 71) in Alger. He was an academic, mycologist and botanist.Champignons phytopathogènes (Mycotheca Boreali-Africana), collectés en Algérie entre 1909 et 1914, répartis en 2 classeurs soit 175 planches.
René Charles Joseph Maire est né le 29 mai 1878 à Lons-le-Saunier (Jura), et mort le 24 novembre 1949 (à 71 ans) à Alger. Il était universitaire, mycologue et botaniste.
DOI: 10.6084/m9.figshare.c.3784286_d5.v1
title: Additional file 5: Table S2. of Transversions have larger regulatory effects than transitions

description: Custom Amplicon Coordinates (BED format). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3784286_d5
title: Additional file 5: Table S2. of Transversions have larger regulatory effects than transitions

description: Custom Amplicon Coordinates (BED format). (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3784286_d6.v1
title: Additional file 6: Table S3. of Transversions have larger regulatory effects than transitions

description: Custom Amplicon Probe Sequences (BED format). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3784286_d6
title: Additional file 6: Table S3. of Transversions have larger regulatory effects than transitions

description: Custom Amplicon Probe Sequences (BED format). (XLSX 21 kb)
DOI: 10.6084/m9.figshare.c.3784304_d3.v1
title: Additional file 3: Table S2. of Genetic correlation of the plasma lipidome with type 2 diabetes, prediabetes and insulin resistance in Mexican American families

description: Results of censored normal regression. (XLSX 35Â kb)
DOI: 10.6084/m9.figshare.c.3784307_d1.v1
title: Additional file 1: of Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat

description: Number of isolates, sampling scheme, origin, and host characterizing the F. culmorum populations under study. (XLS 33Â kb)
DOI: 10.6084/m9.figshare.c.3784286_d7.v1
title: Additional file 7: Table S4. of Transversions have larger regulatory effects than transitions

description: Variant Calls in 760 Individuals (VCF format). (XLSX 2056 kb)
DOI: 10.6084/m9.figshare.c.3784304_d5
title: Additional file 5: Table S4. of Genetic correlation of the plasma lipidome with type 2 diabetes, prediabetes and insulin resistance in Mexican American families

description: Environmental correlation of plasma lipid species with T2D-related traits. (XLSX 54Â kb)
DOI: 10.15468/dl.tknj9h
title: Occurrence Download

description: A dataset containing 9250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Barbarea vulgaris (L.) W.T.Aiton"
 ]
}

 The dataset includes 9250 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038715-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3784307_d2
title: Additional file 2: of Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat

description: Primer sequences, PCR conditions, and the full amplified sequences for the candidate genes used in this study. (XLS 53Â kb)
DOI: 10.6084/m9.figshare.c.3784334_d1
title: Additional file 1:Table S1. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for deletions. Tabular data presenting details of affected carriers of mosaicism for deletion: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3784334_d1.v1
title: Additional file 1:Table S1. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for deletions. Tabular data presenting details of affected carriers of mosaicism for deletion: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3784340_d1.v1
title: Additional file 1: of Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

description: RPKM and differential expression values for the V. parahaemolyticus genome. Additional file includes ORF and sRNA genes for both condition. (XLSX 395 kb)
DOI: 10.6084/m9.figshare.c.3784334_d3.v1
title: Additional file 3: Table S3. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for ring chromosomes. Tabular data presenting details of affected carriers of mosaicism for ring chromosome: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3784340_d1
title: Additional file 1: of Gene expression of Vibrio parahaemolyticus growing in laboratory isolation conditions compared to those common in its natural ocean environment

description: RPKM and differential expression values for the V. parahaemolyticus genome. Additional file includes ORF and sRNA genes for both condition. (XLSX 395 kb)
DOI: 10.6084/m9.figshare.c.3784334_d2.v1
title: Additional file 2: Table S2. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for duplications. Tabular data presenting details of affected carriers of mosaicism for duplication: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3784334_d2
title: Additional file 2: Table S2. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for duplications. Tabular data presenting details of affected carriers of mosaicism for duplication: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3784334_d3
title: Additional file 3: Table S3. of Mosaicism for structural non-centromeric autosomal rearrangements in disease-defined carriers: sex differences in the rearrangements profile and maternal age distributions

description: Mosaicism for ring chromosomes. Tabular data presenting details of affected carriers of mosaicism for ring chromosome: karyotype, parental ages at patient's birth, patientâ  s age at ascertainment/testing, proportion of abnormal cell line(s), and indications for cytogenetic testing. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3784307_d3
title: Additional file 3: of Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat

description: Best linear unbiased estimates (BLUEs) for mean aggressiveness and DON production calculated across four environments (location × year combinations) for 100 F. culmorum isolates. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3784358_d2.v1
title: Additional file 1: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: TaqMan design for genotyping H and H1 lineages. (XLSX 10 kb)
DOI: 10.15468/dl.ajstdp
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonopsis vulsa (Jordan & Gilbert, 1880)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 93 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038716-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3784307_d7
title: Additional file 7: of Candidate gene based association mapping in Fusarium culmorum for field quantitative pathogenicity and mycotoxin production in wheat

description: Characteristics of identified single nucleotide polymorphisms (SNPs) in the candidate genes and p values for association tests against mean aggressiveness and DON production. (LOG 402 bytes) (XLS 34Â kb)
DOI: 10.6084/m9.figshare.c.3784358_d3.v1
title: Additional file 2: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Amplification primers and probes for the three SNaPshot multiplex reactions. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3784358_d2
title: Additional file 1: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: TaqMan design for genotyping H and H1 lineages. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3784358_d4.v1
title: Additional file 3: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Mitochondrial molecular characterization of 337 Andalusians belonging to haplogroup H. Control region information is showed jointly with coding SNPs. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.c.3784358_d5.v1
title: Additional file 4: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Literature compilation for haplogroup H comparative analyses. Geographic affiliations are as follows: WME (Western Mediterranean Europe), WEU (Western Europe), CEU (Central Europe), NEU (North Eastern Europe), EEU (Eastern Europe), CME (Central Mediterranean Europe), CAU (Caucasus), ANA (Anatolia), NES (Near East), ARA (Arabian Peninsula), NAF (North Africa), WAF (Western Africa). Those studies that reached a deep level of resolution inside clade H (towards the definition of specific sub-clades by coding SNP testing) are underlined. The table shows the total sample size (N) and the number of individuals classified as belonging to haplogroup H (NH) for each population. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3784358_d4
title: Additional file 3: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Mitochondrial molecular characterization of 337 Andalusians belonging to haplogroup H. Control region information is showed jointly with coding SNPs. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.28052390
title: zlyy001_raw_1.fq.gz

description: <b>Background:</b> Mucinous cystadenocarcinoma (MCA) of the breast is a rare and distinct type of mammary tract adenocarcinoma. There is lack of information on molecular alterations in MCA in the current epidemiological data. <b>Methods:</b> We summarized the clinicopathological characteristics and performed exome sequencing on formalin-fixed, paraffin-embedded blocks from three patients with mammary MCA culled from the surgical pathology archives of Chongqing University Cancer Hospital. The tumor mutation landscape of these patients was determined using whole-exome sequencing. We assessed cancer effect sizes and analyzed the contribution of mutational processes to each oncogenic variant, quantifying the extent to which each process contributed to tumorigenesis/cancer effects. <b>Results:</b> We identified a significant mutant gene, bone morphogenetic protein 2 (BMP2), that is associated with breast MCA. Furthermore, we evaluated the expression by immunohistochemistry in patients with breast MCA and predicted the potential molecular functions of BMP2 in breast cancer through in silico analyses. <b>Conclusion: </b>Using whole-exome sequencing, immunohistochemistry, and in silico analyses, we identified BMP2 as being implicated in MCA progression, and as having potential implications for predicting target therapy and patient outcomes.
DOI: 10.6084/m9.figshare.28052390.v1
title: zlyy001_raw_1.fq.gz

description: <b>Background:</b> Mucinous cystadenocarcinoma (MCA) of the breast is a rare and distinct type of mammary tract adenocarcinoma. There is lack of information on molecular alterations in MCA in the current epidemiological data. <b>Methods:</b> We summarized the clinicopathological characteristics and performed exome sequencing on formalin-fixed, paraffin-embedded blocks from three patients with mammary MCA culled from the surgical pathology archives of Chongqing University Cancer Hospital. The tumor mutation landscape of these patients was determined using whole-exome sequencing. We assessed cancer effect sizes and analyzed the contribution of mutational processes to each oncogenic variant, quantifying the extent to which each process contributed to tumorigenesis/cancer effects. <b>Results:</b> We identified a significant mutant gene, bone morphogenetic protein 2 (BMP2), that is associated with breast MCA. Furthermore, we evaluated the expression by immunohistochemistry in patients with breast MCA and predicted the potential molecular functions of BMP2 in breast cancer through in silico analyses. <b>Conclusion: </b>Using whole-exome sequencing, immunohistochemistry, and in silico analyses, we identified BMP2 as being implicated in MCA progression, and as having potential implications for predicting target therapy and patient outcomes.
DOI: 10.6084/m9.figshare.c.3784358_d3
title: Additional file 2: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Amplification primers and probes for the three SNaPshot multiplex reactions. (XLSX 62 kb)
DOI: 10.6084/m9.figshare.c.3784358_d5
title: Additional file 4: of The distribution of mitochondrial DNA haplogroup H in southern Iberia indicates ancient human genetic exchanges along the western edge of the Mediterranean

description: Literature compilation for haplogroup H comparative analyses. Geographic affiliations are as follows: WME (Western Mediterranean Europe), WEU (Western Europe), CEU (Central Europe), NEU (North Eastern Europe), EEU (Eastern Europe), CME (Central Mediterranean Europe), CAU (Caucasus), ANA (Anatolia), NES (Near East), ARA (Arabian Peninsula), NAF (North Africa), WAF (Western Africa). Those studies that reached a deep level of resolution inside clade H (towards the definition of specific sub-clades by coding SNP testing) are underlined. The table shows the total sample size (N) and the number of individuals classified as belonging to haplogroup H (NH) for each population. (XLSX 16 kb)
DOI: 10.15468/dl.p5v49q
title: Occurrence Download

description: A dataset containing 8568 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "TaxonKey is Buteo japonicus Temminck & Schlegel, 1844",
 "Year 2001-2024"
 ]
}

 The dataset includes 8568 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038717-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3785414_d1
title: MOESM1 of Innate immune responses induced by the saponin adjuvant Matrix-M in specific pathogen free pigs

description: Additional file 1. Gene expression in pooled blood samples from pigs administered Matrix-M or saline. The gene expression was analysed by a qPCR plate array in pooled blood samples collected at 0, 18, 30 h, 2 and 3 days after administration of Matrix-M (4 pigs) or saline (4 pigs). The relative gene expression is given as FC for each experimental group relative to 0 h (FC = 1). These values are then used to compare the gene expression after Matrix-M administration in relation to that after administration of saline.
DOI: 10.15468/dl.7w9szr
title: Occurrence Download

description: A dataset containing 3368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Agonus cataphractus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 3368 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038718-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3785489_d1.v1
title: Additional file 1: of An updated PREDICT breast cancer prognostication and treatment benefit prediction model with independent validation

description: The observed and predicted (PREDICT v1 and v2) events by individual data set and ER status for age at diagnosis (Table S1), tumour size (Table S2), nodes positive (Table S3) and tumour grade (Table S4). (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3785477_d3.v1
title: Additional file 12: Table S1. of Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity

description: Full list of primers used in this study. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3785477_d3
title: Additional file 12: Table S1. of Silencing of the Rice Gene LRR1 Compromises Rice Xa21 Transcript Accumulation and XA21-Mediated Immunity

description: Full list of primers used in this study. (XLSX 9Â kb)
DOI: 10.6084/m9.figshare.c.3785489_d1
title: Additional file 1: of An updated PREDICT breast cancer prognostication and treatment benefit prediction model with independent validation

description: The observed and predicted (PREDICT v1 and v2) events by individual data set and ER status for age at diagnosis (Table S1), tumour size (Table S2), nodes positive (Table S3) and tumour grade (Table S4). (XLSX 35 kb)
DOI: 10.5284/1124656
title: Data from a Descriptive Buildings Record at Greenfield Farm, High Etherley, Durham, March 2024.

description: This collection comprises images and reports from a descriptive buildings record (Level 2) carried out by ELG Planning at Greenfield Farm, High Etherley on the 14th of March 2024. ELG Heritage were commissioned by the homeowners to undertake a programme of building recording at Greenfield Farm, High Etherley to comply with a condition of planning prior to the demolition of the building.
DOI: 10.6084/m9.figshare.c.3785504_d4.v1
title: Additional file 4: Table S3. of Comparative genomics of Eucalyptus and Corymbia reveals low rates of genome structural rearrangement

description: Correlation of putatively rearranged areas of the Eucalyptus grandis genome with independently constructed linkage maps in E. grandis and E. urophylla. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3785504_d4
title: Additional file 4: Table S3. of Comparative genomics of Eucalyptus and Corymbia reveals low rates of genome structural rearrangement

description: Correlation of putatively rearranged areas of the Eucalyptus grandis genome with independently constructed linkage maps in E. grandis and E. urophylla. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3785510_d2.v1
title: MOESM11 of CPANNatNIC software for counter-propagation neural network to assist in read-across

description: Additional file 11. Training set input file used for the modelling of bio-concentration factor.
DOI: 10.15468/dl.2gqtbr
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ahlia egmontis (Jordan, 1884)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 177 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038719-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3785510_d2
title: MOESM11 of CPANNatNIC software for counter-propagation neural network to assist in read-across

description: Additional file 11. Training set input file used for the modelling of bio-concentration factor.
DOI: 10.6084/m9.figshare.c.3785510_d3.v1
title: MOESM12 of CPANNatNIC software for counter-propagation neural network to assist in read-across

description: Additional file 12. Internal test set input file used for the modelling of bio-concentration factor.
DOI: 10.6084/m9.figshare.c.3785510_d6.v1
title: MOESM15 of CPANNatNIC software for counter-propagation neural network to assist in read-across

description: Additional file 15. The file containing smiles of compounds used for modelling bio-concentration factor.
DOI: 10.6084/m9.figshare.c.3785501_d3.v1
title: Additional file 2: of In silico approach to designing rational metagenomic libraries for functional studies

description: Families created based on HMMs and their associated HMMs. (ZIP 226Â kb)
DOI: 10.15468/ud8xkt
title: Herbier Husnot P.T - Mousses de France (Musci Galliae, TL 98)

description: Herbarium of French mosses (Musci Galliae) published by Pierre Tranquille Husnot in Cahan (Orne). This herbarium is made up of 16 A4 format binders containing 50 specimens each. Sold at the price of 8 Fr. for each issue or in exchange for three species collected in 100 copies. Harvests from 1829 to 1886 in France, Switzerland, Spain, Italy, Belgium, Germany, Austria, Scotland, England, Ireland, Norway, Sweden, Algeria, Saint-Pierre and Miquelon.

Herbier des mousses de France (Musci Galliae) publié par Pierre Tranquille Husnot à Cahan (Orne). Cet herbier est constitué de 16 classeurs de format A4 contenant 50 parts chacun. Vendu au prix de 8 Fr. pour chaque fascicule ou en échange de trois espèces recoltées à 100 exemplaires. Recoltes de 1829 à 1886 en France, Suisse, Espagne, Italie, Belgique, Allemagne, Autriche, Ecosse, Angleterre, Irelande, Norvège, Suède, Algérie, Saint-Pierre-et-Miquelon.
DOI: 10.6084/m9.figshare.c.3785501_d3
title: Additional file 2: of In silico approach to designing rational metagenomic libraries for functional studies

description: Families created based on HMMs and their associated HMMs. (ZIP 226Â kb)