cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dbrv15f0t
title: Data from: Biomass production and stability of five energycane cultivars at two latitudes in Georgia, USA

description: Energycane (Saccharum hyb.) could be a viable bioenergy crop for the
 Southeast USA. Five energycane cultivars were planted in 2008 at
 a northern (Watkinsville, GA) and a southern (Tifton, GA) site, and were
 grown for seven years to compare biomass yields. Plots were
 arranged in a four replicate randomized complete block design at each
 site.  Energycane was grown under rainfed conditions with 90–112
 kg ha-1 N applied annually. Plant height was recorded at least
 monthly, and stalks were sampled to determine juice volume and Brix
 (estimate of sugar concentration) at harvest. Whole plots were
 mechanically harvested each year after killing freeze and weighed to
 determine biomass yields. Biomass yield and mature plant height were
 strongly correlated at both Tifton (r = 0.746) and Watkinsville (r =
 0.727). Biomass yields peaked in year four at Tifton (39.8 Mg
 ha-1) and year five at Watkinsville (30.5 Mg ha-1), but local weather
 conditions had a greater influence on yields than stand
 age. Day-long freezes during the winter and late spring freezes
 after shoot emergence resulted in reduced growth rate and yields in
 subsequent growing seasons. These cold weather events were more
 common at Watkinsville than Tifton, resulting in yields being more
 variable at the northern location. The greatest yielding cultivars were Ho
 06-9001 (27.0 Mg ha-1) and Ho 06-9002 (25.1 Mg ha-1). Stability
 analysis revealed that these two cultivars responded positively to
 favorable environments in terms of biomass yield and plant height.
description: Excel file contains raw data in three sheets:
 Sheet 1 - plot-level yield and related data from five energycane
 cultivars grown at two locations. Each location was a four-replicate
 RCBD. Ht_Tifton - plot level plant height data taken
 every two weeks, with approximate cumulative GDD at Tifton, GA.
 Ht_Watkinsville - plot level plant height data taken monthly,
 with approximate cumulative GDD at Watkinsville, GA.
description: Yield and mature plant height data are complete. One yield
 outlier is highlighted. Other data are missing from some
 environments.
DOI: 10.5061/dryad.xwdbrv1cp
title: Data from: Geography of roadkills within the Tropical Andes biodiversity hotspot: poorly known vertebrates are part of the toll

description: We explore the effect of roads in animal mortality within the
 Biodiversity Hotspot with the highest number of endemic species of
 vertebrates on Earth, the Tropical Andes. Our objectives were to
 know which species are killed on roads in this particularly
 biodiversity-rich area and how landscape composition and configuration
 influences roadkills. We systematically looked for roadkills along roads
 that border three protected areas in the Ecuadorian Andes. To evaluate our
 hypotheses, we used correlation, logistic regression and GIS
 analyses. We surveyed a total of 7128 km and observed a
 roadkill rate of 6.24 (95% CI = 5.35–7.14) individuals per 100
 km/day. Roadkills included poorly known endemic and endangered
 vertebrates; among them, one undescribed snake species of the
 genus Atractus. Most roadkills were by pastures, the
 dominant vegetation by roads in our study area. Roadkills were more likely
 to occur near bridges and were more frequent at greater distances from
 natural vegetation, towns and rivers. We conclude that pastures and
 bridges may be functioning as ecological traps for small and poorly known
 vertebrates. Mitigation measures could include increasing road
 permeability to wildlife by constructing culverts in critical points where
 mortality is high, and the adaptation of areas beneath bridges for them to
 function effectively as wildlife underpasses. These measures should be
 complemented with fences to exclude vertebrates from roads in areas near
 wildlife passages and along pastures. We encourage the
 development of similar studies in biodiversity-rich areas to inform
 mitigation measures that can be adapted to local conditions. 
description: <b>Data S1 to S5, column headings correspond to:</b> Roadkill: 1, when data corresponds to roadkill, 0 when data corresponds to random point rivers: distance to nearest river (meters) towns: distance to nearest town (meters) bridge:  distance to nearest bridge (meters) remnant_vegetation: distance to nearest patch of remnant vegetation (meters) percent_rem_veg: percentage of forest cover within a 100m radius of roadkill or random point <b>Data S6_spatial analysis and land cover; columns correspond to:</b> Code: code of roadkill mmddyy: date (month, day, year) Road_segment: segment of road where roadkill was found Class: vertebrate Class Order: vertebrate Order Family: vertebrate Family Species: binomial latin name UTM zone: zone of UTM coordinates (dataset includes UTM 17M and 18M). XCoordinate: UTM  X coordinate YCoordinate: UTM Y coordinate Time: time when roadkill was detected Altitude: altitude in meters above sea level Land_cover: land cover class at both sides of the road of roadkill site. Shrubs (S), Forest (F), Urban (U), Cropland (C), Pastures (P). A single land cover character indicates the same land cover type at both sides of road.
DOI: 10.5061/dryad.np5hqbzs4
title: Novel approach to delivering pro-environmental messages significantly shifts norms and motivation, but children are not more effective spokespeople than adults

description: Three studies provided initial laboratory tests of the effectiveness of a
 novel form of community-based environmental messaging intended to be
 deployed on public digital signs.  In all studies, adult
 participants watched a slideshow of “Community Voices,” a display that
 combines community images and quotes to celebrate and empower
 pro-environmental and pro-community thought and action.  In
 addition to assessing the general efficacy of the approach, a central goal
 was to assess the impact of alternative messengers by comparing identical
 text associated with either adult or child messengers (Studies 1, 2, and
 3).  We also assessed the impact of alternative framing of the
 message itself by comparing: injunctive vs non-injunctive wording (Study
 1), political vs non-political content (Study 1), and future vs.
 present-oriented framing (Study 2).  Studies 1 and 2 were
 conducted on a national sample.  In addition, to assess the
 impact of local vs. non-local messengers, Study 3 compared the response of
 a non-local sample to a local population in which subjects had personal
 connections with the people and places featured in the message content.
 Exposure to Community Voices messages resulted in significant increases in
 social norm perception, concern about environmental issues, commitment to
 action, and optimism, suggesting that this approach to messaging is
 potentially valuable for stimulating cultural change.  However,
 messages attributed to child messengers were generally not more effective,
 and in some cases were less effective than the same message attributed to
 adults.  We also found no significant difference in the impact of
 the alternative message frames studied.
description: <strong>Messaging, survey items, operational definitions,
 reliabilities.</strong>  This word file provides operational
 definitions and survey items for the analyses reported in manuscript
 PONE-D-20-17314.  Variable names used in the data files appear in brackets
 after the descriptive name<b>.</b>
 <strong>Study1_DataMetadata.xlsx, Study2_DataMetadata.xlsx,
 and Study3_DataMetadata.xlsx.  </strong>These excel files contain
 the raw data used in the analyses.  The second sheet contains metadata
 defining all variable names and value labels.
 <strong>Study1_Data.sav, Study2_Data.sav, and
 Study3_Data.sav</strong>.  These SPSS files contain the raw data
 used in the analyses, as well as variable names and value
 labels.
 <strong>Study1_SPSS_Syntax.pdf, Study2_SPSS_Syntax.pdf,
 and Study3_SPSS_Syntax.pdf.  </strong>These files contain the SPSS
 syntax for analyses reported in manuscript PONE-D-20-17314 and
 supplemental materials.
DOI: 10.15468/dl.mc6g26
title: Occurrence Download

description: A dataset containing 92904 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Madagascar",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 92904 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002712-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.ksn02v738
title: Raw data for: Ecosystem services benefits from the restoration of non-producing US oil and gas lands

description: Fossil fuel infrastructure has important land-use impacts within the US,
 including environmental consequences of affected land persisting beyond
 the lifespan of wells. We estimated ecoregion-specific, 50-year present
 value net benefits of restoring lands associated with non-producing wells
 in the conterminous US based on select ecosystem services: agricultural
 sales and carbon sequestration. We identified over 430,000 restorable
 wells occupying over 800,000 hectares of land. The present value of
 ecosystem services benefits was 21 billion (USD 2018) while restoration
 costs were 7 billion. Deciduous forests, grasslands, and Mediterranean
 ecoregions had large net benefits, while arid and semi-arid regions were
 often negative. Focusing on select ecoregions of the US would provide
 higher returns on investment in the form of environmental and economic
 benefits. Though our results suggest an ecoregional hierarchy, restoration
 of all abandoned fossil fuel lands will have benefits at local, regional,
 and national scales, including food security, protection of biodiversity,
 and restoration-related job opportunities.
description: Data were collected from an industry database (Enverus.com),
 satellite images, USDA statistics, and a variety of peer-reviewed papers.
 The authors developed the formulas and performed the calculations on
 Excel.
description: Equations to generate data are in published paper. Questions
 about the data can be directed to M.D. Moran
DOI: 10.5061/dryad.rn8pk0p8s
title: Evidence of a rapid and adaptive response of hemipteran mouthparts to a physical barrier

description: Animals have encountered novel foods at points throughout history, due to
 factors such as range expansions and niche shifts driven by competition.
 One of the first challenges presented by novel foods is how to eat them.
 Mouthpart morphology is thus critical during the process of host shifts.
 Developmental plasticity in mouthparts is one potential mechanism that may
 allow animals to tolerate new foods and eventually to thrive upon them.
 Here, we investigated the extent to which insect mouthparts from two
 geographically distant populations can converge in morphology when feeding
 on common resources. We conducted a common garden/reciprocal transplant
 experiment using two populations of the cactus bug, Narnia femorata, that
 differ in mouthpart length. This insect uses straw-like mouthparts
 (hereafter “beak”) to get through the cactus fruit wall to reach the pulp
 inside. Our experimental results revealed clear developmental plasticity
 in beak length. Insects from both populations grew longer beaks when they
 fed on the cactus fruit with the thicker walls, and they grew shorter
 beaks when they fed on the cactus fruit with the thinner walls. Thus,
 insects from distant populations exhibited immediate developmental
 responses to a new food, and in the predicted directions. These results
 suggest that some fauna may be able to respond more rapidly than predicted
 when they encounter novel plants.
description: We froze mature adults, and then photographed them using a
 digital camera (Canon EOS 50D) attached to a dissecting microscope (Leica
 M165 C). We used ImageJ to obtain linear measurements of beak length,
 front femur length, and pronotum width. Front femur length was used as
 comparative metric trait. We used pronotum width as our measurement of
 body size.
DOI: 10.6076/d13s3x
title: Gorilla herpes simplexvirus phylogenetic analysis

description: Viruses closely related to human pathogens can reveal the origins of human
 infectious diseases. Human herpes simplexvirus type 1 (HSV-1) and type 2
 (HSV-2) are hypothesized to have arisen via host-virus co-divergence and
 cross-species transmission. We report the discovery of novel herpes
 simplexviruses during a large-scale screening of fecal samples from wild
 gorillas, bonobos, and chimpanzees. Phylogenetic analysis indicates that,
 contrary to expectation, simplexviruses from these African apes are all
 more closely related to HSV-2 than to HSV-1. Molecular clock-based
 hypothesis testing suggests the divergence between HSV-1 and the African
 great ape simplexviruses likely represents a codivergence event between
 humans and gorillas. The simplexviruses infecting African great apes
 subsequently experienced multiple cross-species transmission events over
 the past 3 million years, the most recent of which occurred between humans
 and bonobos around 1 million years ago. These findings revise our
 understanding of the origins of human herpes simplexviruses and suggest
 that HSV-2 is one of the earliest zoonotic pathogens.
DOI: 10.15468/dl.en5n9d
title: Occurrence Download

description: A dataset containing 197394 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pygoscelis adeliae"
 ]
}

 The dataset includes 197394 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002703-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.x0k6djhhq
title: Heterogeneous genetic basis of age at maturity in salmonid fishes

description: Understanding the genetic basis of repeated evolution of the same
 phenotype across taxa is a fundamental aim in evolutionary biology and has
 applications to conservation and management. However, the extent to which
 interspecific life-history trait polymorphisms share evolutionary pathways
 remains under-explored. We address this gap by studying the genetic basis
 of a key life-history trait, age at maturity, in four species of Pacific
 salmon (genus Oncorhynchus) that exhibit intra- and interspecific
 variation in this trait – Chinook Salmon, Coho Salmon, Sockeye Salmon, and
 Steelhead Trout. We tested for associations in all four species between
 age at maturity and two genome regions, six6 and vgll3, that are strongly
 associated with the same trait in Atlantic Salmon (Salmo salar). We also
 conducted a genome-wide association analysis in Steelhead to assess
 whether additional regions were associated with this trait. We found the
 genetic basis of age at maturity to be heterogeneous across salmonid
 species. Significant associations between six6 and age at maturity were
 observed in two of the four species, Sockeye and Steelhead, with the
 association in Steelhead being particularly strong in both sexes (p =
 4.46x10-9 after adjusting for genomic inflation). However, no significant
 associations were detected between age at maturity and the vgll3 genome
 region in any of the species, despite its strong association with the same
 trait in Atlantic Salmon. We discuss possible explanations for the
 heterogeneous nature of the genetic architecture of this key life-history
 trait, as well as the implications of our findings for conservation and
 management.
description: R code and input files for all association analyses are provided
 in Dryad. All genotypic and phenotypic data represented in these files
 were obtained using a variety of methods, which are described in depth in
 the main manuscript and supplementary information.
DOI: 10.5061/dryad.hhmgqnkg3
title: Female extra-pair behavior is not associated with reduced paternal care in Thorn-tailed Rayadito

description: Extra-pair behavior is present in 76% of socially monogamous bird species
 with biparental care. This behavior may produce costs to females related
 to a reduction in paternal care. We estimated the percentage of extra-pair
 offspring and quantified paternal care in 44 nests of Thorn-tailed
 Rayadito (Aphrastura spinicauda) to assess whether males reduce their
 parental care when females obtain extra-pair fertilizations. We used data
 from a sub-Antarctic population of Rayadito located on Navarino Island
 (55°4′S, 67°40′W), southern Chile. We found no statistical support for a
 relationship between variation in paternal care and the percentage of
 extra-pair offspring. We discuss how the inability of breeding males to
 assess their genetic paternity and potential restrictions on behavioral
 flexibility may explain this result. Additionally, if paternal care is
 subjected to sexual selection, this could limit a facultative response to
 female extra-pair behavior by males. Finally, it is possible that a
 reduction in paternal care might not have evolved in this particular
 locality given the low frequency of extra-pair paternity in our study
 population.
DOI: 10.5061/dryad.tmpg4f4xq
title: Quantifying temporal variation in dietary niche to reveal drivers of past population declines; stable isotope, harvest trends, and land use

description: 1. Given the long and dynamic history of anthropogenic disturbances to
 ecosystems, it is difficult to determine the drivers of past population
 declines. These uncertainties dilute the efficacy of conservation efforts
 and might hinder species and ecosystem recovery. 2. Niche quantification
 can be a useful tool for understanding drivers of past population
 declines. Niche parameters reflect key resources used, providing insight
 into the conditions needed to achieve population stability. By
 reconstructing a population’s niche position and space over a period of
 decline and comparing to historic baselines, shifts in the realized niche
 of a species can be assessed. Comparing shifts to historic information on
 resource availability and timing of declines can allow practitioners to
 identify probable drivers of species decline. 3. We demonstrated the
 utility of this technique by reconstructing parameters of isotopic dietary
 niche over a 130 year period and comparing isotopic niche reconstructions
 to land use and crop harvests during this same period
 via regression and Bayesian standard ellipsoid (SIBER) analyses.
 We use a formerly widespread but now endangered species, the eastern
 spotted skunk (Spilogale putorius), addressing the hypothesis that land
 use change and agricultural intensification led to a historical collapse
 of key dietary resources which correlates with population declines in this
 species. To help control for isotopic variability unrelated to population
 decline, we compare trends to those of a secure, but ecologically similar
 generalist mesocarnivore, the striped skunk (Mephitis mephitis), across
 the same spatiotemporal scale. 4. We present evidence that historic
 dietary changes occurred in spotted skunks in the early 1900s but not to
 the same degree in striped skunks. Changes in isotopic composition
 correspond with the temporal period of decline and are explained by
 concurrent changes in land use. These results support the hypothesis that
 loss of key dietary resources as a result of land use change and
 agricultural intensification played a significant role in population
 declines of spotted skunks in this region.
description: Stable isotope data obtained from hairs of museum specimens of
 eastern spotted skunk (<em>Spilogale putorius</em>) and
 striped skunk (<em>Mephitis mephitis</em>). Harvest data
 compiled from Kansas Fish and Game Commission and the United States Fish
 and the Wildlife Service Wildlife Leaflets Series. Landuse data compiled
 from the US Census of Agriculture. Additional notes in the
 README.txt
description: Please see README.txt
DOI: 10.5061/dryad.w6m905qnz
title: Data from: Insect visual sensitivity to long wavelengths enhances colour contrast against vegetation

description: The sensitivity of animal photoreceptors to different wavelengths of light
 strongly influence the perceived visual contrast of objects in the
 environment. Outside of the human visual wavelength
 range, ultraviolet sensitivity in many species provides important
 and behaviourally relevant visual contrast between objects.
 However, at the opposite end of the spectrum, the potential advantage of
 red sensitivity remains unclear. We investigated the potential benefit of
 long wavelength sensitivity by modelling the visual contrast of a wide
 range of jewel beetle colours against flowers and leaves of their host
 plants to hypothetical insect visual systems. We find that the presence of
 a long wavelength sensitive photoreceptor increases estimated colour
 contrast, particularly of beetles against leaves. Moreover, under our
 model parameters, a trichromatic visual system with ultraviolet
 (λmax = 355 nm), short (λmax = 445 nm) and long
 (λmax = 600 nm) wavelength photoreceptors performed as well as a
 tetrachromatic visual system, which had an additional medium wavelength
 photoreceptor (λmax = 530 nm). When we varied λmax for
 the long wavelength sensitive receptor in a tetrachromatic system,
 contrast values between beetles, flowers and leaves were all enhanced with
 increasing λmax from 580 nm to at least 640 nm. These results
 suggest a potential advantage of red sensitivity in visual discrimination
 of insect colours against vegetation and highlight the potential adaptive
 value of long wavelength sensitivity in insects.
DOI: 10.5061/dryad.3n5tb2rg9
title: Effect of dapagliflozin on urine metabolome in patients with type 2 diabetes

description: Abstract    Context Inhibitors of sodium-glucose
 cotransporters-2 have cardio- and renoprotective properties. However, the
 underlying mechanisms remain indeterminate. Objective To evaluate the
 effect of dapagliflozin on renal metabolism assessed by urine metabolome
 analysis in patients with type 2 diabetes. Design Prospective cohort
 study. Setting Outpatient diabetes clinic of a tertiary academic centre.
 Patients Eighty patients with HbA1c&gt; 7% on metformin monotherapy
 were prospectively enrolled.  Intervention Fifty patients were
 treated with dapagliflozin for 3 months.  To exclude that the
 changes observed in urine metabolome were merely the result of the
 improvement in glycemia, 30 patients treated with insulin degludec were
 used for comparison. Main Outcome Measure Changes in urine metabolic
 profile before and after the administration of dapagliflozin and insulin
 degludec were assessed by Proton-Nuclear Magnetic Resonance spectroscopy
 (1H-NMR). Results In multivariate analysis urine metabolome was
 significantly altered by dapagliflozin (R2X=0.819, R2Y=0.627, Q2Y=0.362,
 and CV-ANOVA, p&lt;0.001) but not insulin. After dapagliflozin the
 urine concentrations of ketone bodies, lactate, branched chain amino acids
 (p&lt;0.001), betaine, myo-inositol (p&lt;0001) and
 N-Methylhydantoin (p&lt; 0.005) were significantly increased.
 Additionally, the urine levels of alanine, creatine, sarcosine and citrate
 were also increased (p&lt;0001, &lt;0.0001 and &lt;0.0005,
 respectively) whereas anserine decreased (p&lt;0005). Conclusions
 Dapagliflozin significantly affects urine metabolome in patients with type
 2 diabetes in a glucose lowering-independent way. Most of the observed
 changes can be considered beneficial and may contribute to the
 renoprotective properties of dapagliflozin.
description: This dataset was collected using NMR spectroscopy.