cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20995345.v1
title: Retrospective confidence as metacognitive measure

description: Metacognition – the ability of individuals to monitor one’s own cognitive performance and decisions – is often studied empirically based on the retrospective confidence ratings. In experimental research, participants are asked to report how sure they are in their response, or to report how well their performance in high-level cognitive or low-level perceptual tasks is. These retrospective confidence ratings are used as a measure of monitoring effectiveness: larger difference in confidence ratings assigned to correct and incorrect responses reflects better ability to estimate the likelihood of making an error by an experiment participant, or better metacognitive monitoring ability. We discuss this underlying assumption and provide some methodological consideration that might interfere with interpretation of results, depending on what is being asked to evaluate, how the confidence response is elicited, and the overall proportion of different trial types within one experimental session. We conclude that mixing trials on which decision confidence is assigned when positive evidence needs to be evaluated and the trials on which absence of positive evidence needs to be evaluated should be avoided. These considerations might be important when designing experimental work to explore metacognitive efficiency using retrospective confidence ratings.
DOI: 10.6084/m9.figshare.27028582.v1
title: Wikidata 2023 References to Scientific Publications

description: The dataset comprises over 260,000 scientific references from Wikidata 2023, showcasing the academic impact of each referenced paper. It includes data extracted from the OpenAlex platform, such as DOI, publication year, citation count, domain categorization, and journal metrics like the H-index.
DOI: 10.6084/m9.figshare.27857745.v1
title: Data.zip

description: Spectral (reflectance, transmittance, and absorptance) and Net Electric Flux data for square, oblong, and respective L-shaped structures in all-dielectric metasurfaces. Data acquired from COMSOL 6.0 with the Wave Optics Module.
DOI: 10.6084/m9.figshare.28360028.v1
title: Phenotypic and genomic data used for training and validation of genomic selection models

description: GS models were developed on 180 lines from two Recombinant Inbred Line (RIL) populations characterized in three autumn-sown Italian environments and relied on 5,537 SNP from genotyping-by-sequencing. Validation in two cropping years concerned 108 independent lines from five RIL populations, two of which were the same employed for training, while three shared one parent each with training populations.
DOI: 10.6084/m9.figshare.7071770.v3
title: Spin: A Docker-based Platform for Deploying Science Gateways at NERSC

description: This demonstration presents Spin, a Docker-based, on-premise cloud platform at NERSC that enables researchers to design, build, and manage their own science gateways and other services using container technology. After explaining the rationale behind building Spin and describing its basic architecture, staff will show how simple services can be created in a few minutes using basic tools. A discussion of science gateways that have been implemented with Spin will follow.
DOI: 10.6084/m9.figshare.8061956.v2
title: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation

description: Mycobacterium bovis BCG Danish 1331 (07/270) genome annotation
DOI: 10.17632/cggcyvkwyr
title: Data for: Service Fundraising and the Role of Perceived Donation Efficacy in Individual Charitable Giving

description: Online experiment data on the effect of different fundraising models on perceived donation efficacy and charitable giving intentions
DOI: 10.6084/m9.figshare.28716461.v1
title: Supplementary Tables

description: This study reveals the pivotal role of GR-mediated transcriptional regulation in stress-induced FLS in chickens. Chronic stress modeled with CORT disrupted mitochondrial SC assembly, impairing electron transport, elevated ROS production, and liver steatosis. Notably, the downregulation of Complex I assembly factors (NDUFAF5, NDUFAF7, and TIMMDC1) and reduced GR binding to NDUFAF5 were key mechanisms. These findings provide new insights into stress-driven mitochondrial dysfunction in broiler FLS.
DOI: 10.6084/m9.figshare.7542932.v4
title: Second case study on the use of irradiance ratios

description: The dataset included in this folder contains the results of a second case study of the use of irradiance ratios for calculating the effect of reflections on obstruction in the ESP-r building performance simulation platform via the Modish procedure, by the author. The materials which are necessary to reproduce the simulations in Esp-r (version 13.4 or later) and EnergyPlus (version 9.5) are also included. Finally, the definitive results of the first case study are included.Modish is a program for bringing into account the reflective effect of solar obstructions on solar gains in an ESP-r building model on the basis of the irradiance ratios combining the direct unreflected radiation on a surface, as calculated by ESP-r, and the total radiation on the same surface calculated by the means of Radiance.The Modish procedure has been implemented in the Perl library Sim::OPT::Modish (https://metacpan.org/pod/distribution/Sim-OPT/lib/Sim/OPT/Modish.pm). The library originally output hourly shading factor results relative to the average day of each month, and has subsequently been modified to work with hourly data unlinked from the average monthly model. This latter version of the procedure has been integrated in the state-of-the-art building performance simulation application ESP-r (http://www.strath.ac.uk/research/energysystemsresearchunit/applications/esp-r/). The most recent version of Modish is currently available in the ESP-r source code. The Sim::OPT::Modish version will be kept updated with the ESP-r-embedded Modish version.This research has been published in the following article:Gian Luca Brunetti (2020). "Utilization of irradiance ratios for calculating the effect of reflections from obstructions in building energy simulation". <i>Building Simulation</i>. DOI: 10.1007/s12273-020-0722-2
DOI: 10.6084/m9.figshare.7951862.v1
title: gVCF_NA21142

description: 1000 Genomes gVCF mapped to hs37d5 for NA21142. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.12046242.v1
title: AquaDNA metabarcodes of European Benthic fauna

description: This is ta complete database of metabarcodes for freswhater benthic fauna of Europe. It includes:- sequences generated specifically from 1514 individuals. Each individual has been sequenced at three markers: Euka02, Inse01 and BF1_BR2-COI (Guardiola et al 2015; Taberlet et al. 2018; Elbrecht & Leese,2017) sequences retrieved from GenBank that correspond to these three metabarcodes.<br>Only sequences from benthic genera belonging to the European fauna are included.<br>
DOI: 10.6084/m9.figshare.12518483.v1
title: Gene database for Escherichia coli K-12

description: Commensal in the gut, the Gram-negative rod-shaped <i>Escherichia coli</i> is perhaps the most familiar of the common bacteria that people knows about. Indeed, from a pathogen involved in food poisoning to a biotechnology workhorse producing useful products, the facultative anaerobic <i>E. coli</i> bacterium has received intense research scrutiny into varied aspects of its metabolism and genetic repertoire. Used as a model organism for understanding fundamental biological questions and a microbial chassis for biotechnology purposes, <i>E. coli</i> continues to withhold secrets important to furthering our understanding of biology or developing better biotechnology platforms. This work reports the gene database of <i>E. coli</i> K-12 obtained through parsing the annotated genome sequence of the bacterium from Genbank. Comprising gene name, gene function descriptor, and gene sequence, the gene database of <i>E. coli</i> K-12 should find use in a variety of molecular cloning and genome editing workflows seeking to understand functional genomics or to exploit the rich genetic repertoire of the organism for biotechnology purposes.
DOI: 10.6084/m9.figshare.13146335.v1
title: Listagem das angiospermas do Chaco brasileiro

description: Lista completa das espécies e respectivas famílias contidas no capítulo FLORA DO CHACO: RIQUEZA, DISTRIBUIÇÃO E STATUS DE CONSERVAÇÃO DAS ESPÉCIES do livro Chaco [recurso eletrônico] : caracterização, riqueza, diversidade, recursos e interações / organizadores, Ângela Lúcia Bagnatori Sartori, Paulo Robson de Souza, Rosani do Carmo de Oliveira Arruda – Campo Grande, MS : Ed. UFMS, 2021 disponível em https://repositorio.ufms.br/handle/123456789/4217
DOI: 10.6084/m9.figshare.19934336.v1
title: Effects of neighborhood socioeconomic status on blood pressure in older adults

description: ABSTRACT OBJECTIVE To test if the neighborhood socioeconomic status is associated with systolic blood pressure and hypertension in older adults. METHODS A cross-sectional population-based study with a sample of 1,705 older adults from Florianópolis, SC, Southern Brazil. The contextual variable used was the average years of schooling of the head of the household in census tracts. Participants were considered hypertensive when the systolic blood pressure was ≥ 140 mmHg, diastolic ≥ 90 mmHg, or both. Additionally, the use of antihypertensive medication was also considered. Data were analyzed by using multilevel models of logistic and linear regression. RESULTS The average age of the sample was 70.7 years and the average of systolic and diastolic blood pressure was 133.5 mmHg (SD = 20.5 mmHg) and 81.9 mmHg (SD = 12.5 mmHg), respectively. The systolic blood pressure was 4.46 mmHg (95%CI 1.00–7.92) higher and the chance of hypertension was 1.80 (95%CI 1.26–2.57) among those who lived in census tracts with lower level of schooling. When the use of antihypertensive medication was combined with blood pressure levels, none association was found between the outcome and the level of schooling of the census tract. CONCLUSIONS Analytical models more robust (such as multilevel analysis) in Brazil are still little used, with a small number of articles published. Neighborhood socioeconomic status is associated with systolic blood pressure and the chance of hypertension, regardless of individual characteristics.
DOI: 10.6084/m9.figshare.20469156.v1
title: Data and supporting code: Amah Mutsun cultural plant modeling

description: Datasets used and produced for the manuscript entitled Modeling spatial distributions of Amah Mutsun priority cultural plants to support Indigenous cultural revitalization. All of the predictor datasets are publicly available with those sources and publications properly cited in the manuscript. The code used in this analysis can be found at the following repository: https://github.com/annietaylor/model_cultural_plants. All the raw non-spatial data as well as the spatial datasets published are made available here. The remainder of the spatial datasets created in this work are considered sensitive and cannot be provided publicly. These datasets may be requested through the Amah Mutsun Tribal Band's Tribal Council as they are considered confidential to the Tribe. Requests to access the sensitive datasets should be directed to Annalise Taylor, annalisetaylor@berkeley.edu.
DOI: 10.6084/m9.figshare.21647756.v1
title: Porcine Skin Data

description: Porcine skin data sets of "Temperature dependence of the dielectric function of dehydrated biological samples in the THz band" <br> The data is stored in a way that the columns represent the following information: <br> Column | information 1 | Frequency [THz] 2 - 6 | real part refractive index 7 - 11 | error real part refractive index 12 - 16 | imaginary part refractive index 17 - 21 | error imaginary part refractive index 22 - 26 | absorption coefficient [1/cm] 27 - 31 | error absorption coefficient [1/cm] 32 - 36 | real part dielectric function 37 - 41 | error real part dielectric function 42 - 46| imaginary part dielectric function 47 - 51| error imaginary part dielectric function <br> Subsequent columns show the information for different temperatures @ 20, 22.5, 27.5, 32.5, 36.5 °C. <br> So that for example: <br> n @ 20.0°C | n @ 22.5°C | n @ 27.5°C | n @ 32.5°C | n @ 36.5°C <br> The data sets represent processed data.
DOI: 10.6084/m9.figshare.22362802.v1
title: GDSC009 matrix results

description: GDSC009 matrix results
DOI: 10.6084/m9.figshare.27930894.v4
title: Datafile 2. Microalgae species with accession and annotated/not annotaded

description: Microalgae species with accession and annotated/not annotaded
DOI: 10.6084/m9.figshare.29149343.v1
title: OpCode-Putin-in Ukraine war.csv

description: operational code analysis of Putin during the Ukraine war which was done by Profilerplus.
DOI: 10.17632/hw576fjg9s
title: Combined analysis of gut microbiome and serum metabolomics reveals novel biomarkers in patients with early-stage non-small cell lung cancer

description: early-stage non-small cell lung cancer gut microbiome and serum metabolomics
DOI: 10.17632/thvxjjnsc3
title: A set of program code for the article "Thermocatalytic decomposition of methane for hydrogen production: experimental-theoretical research"

description: The program is designed to calculate one-dimensional (along the channel length) profiles of methane, hydrogen and carbon concentrations in the process of methane pyrolysis. It can be used to calculate and analyze the process of obtaining hydrogen from methane by thermal or thermocatalytic decomposition. The program allows calculating the concentrations of methane, hydrogen and carbon in the process of methane pyrolysis based on the assignment of initial data (activation energy, rate of chemical reactions, temperature in the reaction zone, etc.), initial and boundary conditions.
DOI: 10.17632/wptgsbr7fn
title: Thermal-Images-of-Bread-Contamination-Labeled

description: This dataset consists of thermal images of bread slices, both contaminated and uncontaminated, designed for training and evaluating computer vision models for contamination detection. Commercial white bread was used, with slices standardized for size (10x10x1 cm) and moisture content (35 ± 2%). Four common food processing contaminants (deionized water, refined vegetable oil, food-grade machinery grease, and a diluted cleaning agent) were applied at two different levels, with 50 bread slices prepared for each contaminant and 50 uncontaminated controls. Contaminant application was carefully controlled using micropipettes and spatulas, with triplicate runs for each scenario. Thermal images were captured using a FLIR One Pro camera (160x120 resolution, 70 mK sensitivity) within a custom-built, light- and temperature-controlled enclosure. A hot-air blower provided a heat stimulus (35°C airflow for 2 or 3 seconds) at a 45° angle, and a conveyor system with a non-reflective black surface ensured consistent imaging. A total of 650 thermal images were acquired. Preprocessing and augmentation were performed using Roboflow software. Preprocessing steps included auto-orientation, cropping, resizing to 640x640, auto-contrast adjustment, and grayscale conversion. Augmentation techniques included flipping and exposure adjustments. The final dataset comprises 1342 training images, 56 validation images, and 28 test images along with their labels.
DOI: 10.6084/m9.figshare.10269725.v1
title: data_source_code.zip

description: Data and source code of the paper "MARC: a robust method for multiple-aspect trajectory classification via space, time, and semantic embeddings". Detailed information of the data can be found in the paper.
DOI: 10.6084/m9.figshare.11841858.v1
title: Data and R Scripts from Linking microbial communities to ecosystem functions: what we can learn from genotype–phenotype mapping in organisms

description: Directory containing raw data and R scripts to recreate the analysis.
DOI: 10.6084/m9.figshare.20063267.v3
title: Caatinga_SM.zip

description: Supporting Information Data_S1 from Costa-Pinto et al. (2022). “Small Mammals from the Caatinga: A Dataset for the Brazilian Semiarid Biome.” Ecology e3879. https:// doi.org/10.1002/ecy.3879 1- Caatinga_SM_loc.csv 2- Caatinga_SM_rec.csv 3- MetadataS1.pdf
DOI: 10.6084/m9.figshare.22188997.v1
title: Supplementary Material for: Eosinophilic Fasciitis Presenting as an Ichthyosiform Eruption of the Bilateral Ankles

description: Eosinophilic fasciitis (EF) is a rare connective tissue disease which closely resembles other scleroderma-like diseases. EF presents with painful swelling and hardening of the distal limbs and is often preceded by a history of strenuous exercise. The marked fascial fibrosis in EF can lead to joint contractures and causes significant morbidity in affected individuals. The authors present a rare case of EF presenting as an ichthyosiform eruption of the bilateral ankles with gradual improvement after the implementation of oral prednisone, hydroxychloroquine, and methotrexate.
DOI: 10.6084/m9.figshare.24039429.v1
title: Diameter at Breast Height (DBH) data of temperate zone trees from different woodland types.

description: Diameter at Breast Height (DBH) data of temperate zone trees, from different woodland types (semi-natural forest, wood-pasture, plantation)From semi-natural forests and wood-pastures, data is collected for Oak (Quercus), Hornbeam (Carpinus) and Beech (Fagus) trees.From plantations (two, approximatelly 10 and 15 years old plantations), data is collected for Poplar (Populus)) trees.
DOI: 10.17632/f828gc3nyv
title: Dataset: The moderating role of a corporate life cycle on corporate social responsibility China companies

description: This dataset collects data on China's A-share listed companies in 2018 and 2019.

Symbol Meaning Calculation formula
Stkcd Stock code --
CSRPI corporate social responsibility participation index a weighted average of criteria and weights
EVAr relative EVA the ratio of EVA to total capital
MA company mature stage Dummy variable：for a mature company 1, otherwise 0. 
SIZE company size the natural log of total assets of a company
LEV financial leverage the ratio of total debt to total assets
EOC equity ownership concentration the ratio of the largest shareholder ownership（%）
CH cash holding rate the ratio is the sum of cash balance and marketable securities divided by total assets
R&D R&D expense rate the ratio of R&D expense to total assets
AGE company age indicator the natural logarithm of company age
Industry the company's industry categorical variable with two-digit codes for each industry 
Year years of analysis the 2018 sample is 2018, and the 2019 sample is 2019 
ROE Return on Equity the ratio of net profit to equity
CSRPIe corporate social responsibility participation index a simple average with equal weight for each criterion
Mature5 company mature stage Dummy variable：for a mature company 1, otherwise 0.
DOI: 10.6084/m9.figshare.1512427.v5
title: brain tumor dataset

description: This brain tumor dataset contains 3064 T1-weighted contrast-inhanced images with three kinds of brain tumor. Detailed information of the dataset can be found in readme file.
DOI: 10.6084/m9.figshare.19336346.v3
title: A long-term reconstructed TROPOMI solar-induced fluorescence dataset using machine learning algorithms

description: Satellite-retrieved solar-induced chlorophyll fluorescence (SIF) can be a valuable proxy for photosynthesis. TROPOspheric Monitoring Instrument (TROPOMI) on the Copernicus Sentinel-5P mission enables significant improvements in measuring SIF, but the short temporal coverage of the data records has limited its applications in long-term studies. This dataset uses machine learning to reconstruct TROPOMI SIF (RTSIF) for 2001-2020 with a spatial resolution of 0.05° and a temporal resolution of 8 days. Our machine learning model has high accuracy on the training and testing data (R<sup>2</sup> = 0.907, regression slope = 1.001). The RTSIF dataset is in good agreement with the original TROPOMI SIF, and its accuracy is further validated against tower-based SIF. The RTSIF dataset is also compared with other satellite-derived SIF (GOME-2 SIF and OCO-2 SIF). Comparing RTSIF with Gross Primary Production (GPP) illustrates the potential of RTSIF for estimating carbon fluxes. We anticipate that this new dataset will be valuable in assessing long-term terrestrial photosynthesis and constraining the global carbon budget and associated water fluxes.
DOI: 10.6084/m9.figshare.22117235.v1
title: Running Exercise IMU Dataset

description: Includes the raw IMU data for 20 participants performing seven different running exercises each. 20 participants: 16 m, 4 f, 16 to 31 yo, healthy, do sports regularly Seven exercises: Carioca left, carioca right, heel-to-butt, high-knee running, sideskips left, sideskips right, regular running Four IMUs: accelerometer + gyroscope each, two at wrists, two at ankles Ten seconds per recording under supervision One .json file per recording with sensor values and timestamps
DOI: 10.6084/m9.figshare.4434833.v1
title: Taxonomic, phylogenetic and ecological diversity of <i>Niphargus</i> (Amphipoda: Crustacea) in the Hölloch cave system (Switzerland)

description: Groundwater belongs to the spatially most extensive, but least explored freshwater systems. On a global scale, the species richness of several subterranean invertebrate taxa parallels species richness found in surface waters, while on a local scale species richness hardly exceeds 20 species. This results in a high contribution of groundwater ecosystems to regional β- and γ-diversity, and to a smaller degree to α-diversity, and deserves focused attention. In general, more species are to be found in large cave systems. The second largest cave system in Europe is Hölloch in Switzerland. In this paper we revised the taxonomic, phylogenetic and ecological diversity of the amphipod community in the Hölloch cave system. While previous records listed five geographically widespread species of the genus <i>Niphargus</i> for this cave system, we could not confirm the presence of any of those species, but rather found three highly distinct species new to science. In this paper we describe <i>Niphargus styx</i> sp. nov., <i>Niphargus murimali</i> sp. nov., and <i>Niphargus muotae</i> sp. nov., and suggest that previous records from that cave were probably misidentifications. Although amphipod species richness in this cave system seems to be lower than previously thought in terms of absolute numbers, the cave retained its regional and international importance in terms of nature conservation for multiple reasons. First, all newly described species are probably endemic to this cave system. Second, they are phylogenetically distantly related and exhibit moderate to high phylogenetic diversity. Third, the species, as inferred from their functional morphology, are also ecologically highly divergent. Based on geographic distribution of their nearest relatives, we hypothesize that the cave system was most likely independently colonized from North, West and South and that the pre-adapted ancestors occupied different ecological niches within the system. http://zoobank.org/urn:lsid:zoobank.org:pub:A19309E5-C06B-4844-A4D8-7571F05F25C9