cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23261393
title: Data_SCI-ptilo.xlsx

description: Sylvicultural practices are increasingly directed at forest conservation, restoration and sustainable management. Forests with higher structural complexity are expected to be more resilient against climate change impacts and to have a higher diversity of ecological niches. The impact of forest structural complexity on individual organisms, however, is less well known. To bridge this knowledge gap, we here test if structurally more complex forests provide a more favourable nutritional environment for forests birds, using ptilochronology as an indicator for individual condition. We therefore measured the width of growth bars in tail feathers of great tits (<em>Parus major</em>) captured in 19 forest plots along a gradient of increasing structural complexity. After validating our assumption that series of growth bars reflect the outcome of an energetic income vs. expenditure balance with possible consequences for health and fitness, we show that birds in structurally more complex forests maintain a better nutritional status, probably due to a higher and more stable availability of food resources and more sheltered habitat. Dominant tree species, architecture and associated ecology also play an important role, as some of the observed relationships appear to be tree species-specific. Overall, we demonstrate the importance of a complex forest structure and herb layer, and argue for the need for individual research on the condition, performance and health of forest species to inform managers and policymakers on the impact of changing forestry practices on biodiversity and ecosystem functioning.
DOI: 10.6084/m9.figshare.23261369.v1
title: LSDV_genomes_2023

description: There are 42 in total, some may be genetically identical (and are thus duplicates you can remove). KSGP 0240 is the LA vaccine sample, and there are 6 Neethling (other vaccine) samples. The other 35 are wild-type samples. This metadata is in the header lines of the samples.
DOI: 10.6084/m9.figshare.23261369
title: LSDV_genomes_2023

description: There are 42 in total, some may be genetically identical (and are thus duplicates you can remove). KSGP 0240 is the LA vaccine sample, and there are 6 Neethling (other vaccine) samples. The other 35 are wild-type samples. This metadata is in the header lines of the samples.
DOI: 10.5281/zenodo.7986586
title: Supplementary material for the article: Analysis of transcriptomics data from COVID-19 patients: pilot re-search

description: <strong>Supplementary table 1:</strong> <strong>Genes affected by COVID-19 infection.</strong> Differentially expressed genes analysis by DESeq2 statistical test – whole result table. Comparison of gene expressions between 72 samples from COVID-19 positive patients and 24 samples from healthy donors. Significance was judged by adjusted p-vlaue, with threshold set on 0.1. <strong>Supplementary table 2:</strong> <strong>Genes affected by severity of COVID-19.</strong> Differentially expressed genes analysis by DESeq2 statistical test – whole result table. Comparison of gene expressions between 23 samples from COVID-19 positive patients with severe symptoms and 25 with mild symptoms. Significance was judged by adjusted p-vlaue, with threshold set on 0.1.
DOI: 10.5281/zenodo.7986585
title: Supplementary material for the article: Analysis of transcriptomics data from COVID-19 patients: pilot re-search

description: <strong>Supplementary table 1:</strong> <strong>Genes affected by COVID-19 infection.</strong> Differentially expressed genes analysis by DESeq2 statistical test – whole result table. Comparison of gene expressions between 72 samples from COVID-19 positive patients and 24 samples from healthy donors. Significance was judged by adjusted p-vlaue, with threshold set on 0.1. <strong>Supplementary table 2:</strong> <strong>Genes affected by severity of COVID-19.</strong> Differentially expressed genes analysis by DESeq2 statistical test – whole result table. Comparison of gene expressions between 23 samples from COVID-19 positive patients with severe symptoms and 25 with mild symptoms. Significance was judged by adjusted p-vlaue, with threshold set on 0.1.
DOI: 10.6084/m9.figshare.22773771.v1
title: Concave-Convex PDMP-based sampling

description: Recently non-reversible samplers based on simulating piecewise deterministic Markov processes (PDMPs) have shown potential for efficient sampling in Bayesian inference problems. However, there remains a lack of guidance on how to best implement these algorithms. If implemented poorly, the computational costs of simulating event times can out-weigh the statistical efficiency of the non-reversible dynamics. Drawing on the adaptive rejection literature, we propose the concave-convex adaptive thinning approach for simulating a piecewise deterministic Markov process, which we call CC-PDMP. This approach provides a general guide for constructing bounds that may be used to facilitate PDMP-based sampling. A key advantage of this method is its additive structure - adding concave-convex decompositions yields a concave-convex decomposition. This makes the construction of bounds modular, as given a concave-convex decomposition for a class of likelihoods and a family of priors, they can be combined to construct bounds for the posterior. We show that constructing our bounds is simple and leads to computationally efficient thinning. Our approach is well suited to local PDMP simulation where conditional independence of the target can be exploited for potentially huge computational gains. We provide an R package and compare with existing approaches to simulating events in the PDMP literature. Supplementary material for this article is available online.
DOI: 10.6084/m9.figshare.22696143.v1
title: Quantizing rare random maps: application to flooding visualization

description: Visualization is an essential operation when assessing the risk of rare events such as coastal or river floodings. The goal is to display a few prototype events that best represent the probability law of the observed phenomenon, a task known as quantization. It becomes a challenge when data is expensive to generate and critical events are scarce, like extreme natural hazard. In the case of floodings, each event relies on an expensive-to-evaluate hydraulic simulator which takes as inputs offshore meteo-oceanic conditions and dyke breach parameters to compute the water level map. In this article, Lloyd’s algorithm, which classically serves to quantize data, is adapted to the context of rare and costly-to-observe events. Low probability is treated through importance sampling, while Functional Principal Component Analysis combined with a Gaussian process deal with the costly hydraulic simulations. The calculated prototype maps represent the probability distribution of the flooding events in a minimal expected distance sense, and each is associated to a probability mass. The method is first validated using a 2D analytical model and then applied to a real coastal flooding scenario. The two sources of error, the metamodel and the importance sampling, are evaluated to quantify the precision of the method.
DOI: 10.5066/p9n32h5y
title: Evansville Urban Seismic Hazard Maps, v2010

description: Evansville, Indiana has a dense urban population near faults capable of producing major earthquakes. A high probability of a moderate earthquake in the near future (e.g., a 25?40% probability of a magnitude 6.0 or greater in the next 50 years) from the New Madrid seismic zone, and more moderate probability of a similar-sized earthquake in the Wabash Valley, coupled with relatively low regional attenuation (in other words, seismic waves have the potential to do damage and propagate over a greater geographic area in this region than for the same magnitude earthquake in the western U.S.) necessitates being prepared for earthquake hazards. This dataset provides maps of probabilistic and deterministic earthquake ground motions and liquefaction hazard for the Evansville, Indiana metropolitan area. The following tables are available (see DATA_README.txt for additional information): Liquefaction potential measurements: lpi-cpt_evansville_pu-jhaase_2010-07-22.csv Liquefaction potential grid: lpi-grid_evansville_pu-jhaase_2010-07-22.csv Earthquake scenario ground motions for a New Madrid event: scenario-nm7-7_evansville_pu-jhaase_2010-06-06.csv Earthquake scenario ground motions for a Wabash Valley event: scenario-wv6-8_evansville_pu-jhaase_2010-06-06.csv Probabilistic earthquake ground motions: psha_evans_pu-jhaase_2010-06-06.csv
DOI: 10.5281/zenodo.7956290
title: Source data for paper "Operando electron microscopy investigation of polar domain dynamics in twisted van der Waals homobilayers"

description: Source data for paper "Operando electron microscopy investigation of polar domain dynamics in twisted van der Waals homobilayers"
DOI: 10.5281/zenodo.7956289
title: Source data for paper "Operando electron microscopy investigation of polar domain dynamics in twisted van der Waals homobilayers"

description: Source data for paper "Operando electron microscopy investigation of polar domain dynamics in twisted van der Waals homobilayers"
DOI: 10.17031/64760e6e008ef
title: North Atlantic CPR observations from 1958 to 2020

description: Zip file containing CPR observations and the taxa list from the North Atlantic between 1958 and 2020 for those taxa that have been consistently looked for since 1958 and have a robustness flag of 1, sample level data (each sample being 1 row, equating to approx. 10 nautical miles of tow, 3m3 of filtered seawater). There are two csv files, the first contains the taxa observed (where and when), the second contains the taxa names and their ID used within the CPR Survey. CPR data is collected according to standard CPR methodology, see Richardson et al. 2006, Prog in Oceanog 68. 27-74.
DOI: 10.5281/zenodo.7986672
title: Physico-chemical characterization of Ce0.9Zr0.1O2 nanoparticles by XPS / HAXPES / SEM

description: Here a dataset of XPS, HAXPES and SEM measurements for the physico-chemical characterization of nanoparticles is presented. The measurements are part of the H2020 project “NanoSolveIT”. Ce<sub>0.9</sub>Zr<sub>0.1</sub>O<sub>2</sub> nanoparticles were provided by Promethean Particles (EMR identifier in the project: ERM00000399). Prior to the measurements, the samples were prepared from the solution as drop cast on Si wafers. First SEM and EDS measurements were performed, followed by XPS and HAXPES measurements on the same samples. Here at first survey spectra were recorded followed by high resolution spectra. For XPS / HAXPES several Si-wafers were mounted together on one platen. The platen was left in the intro chamber of the instrument for several hours before the measurement started. Equipment: SEM images were acquired with a <em>Supra 40 </em>(Zeiss) SEM equipped with a <em>Quantax 400 </em>(Bruker) SDD EDS spectrometer. For X-ray spectroscopy experiments, a combined XPS / HAXPES spectrometer (<em>Quantes </em>from ULVAC-PHI) was used, where XPS is measured at 1486.6 eV (monochromatic Al Kα source) and HAXPES at 5414.9 eV (monochromatic Cr Kα source). Here it is possible to perform the measurements at the exact same position. Data: For SEM, the data are given in .tif format. For XPS / HAXPES the raw data are given as .spe (PHI format) and .npl (VAMAS format) files. The measurement conditions are given in the data files. Naming of data: SEM: <em>sample_treatment (n)</em>, with n a consecutive number. XPS / HAXPES: For the .spe and for the corresponding .npl files <em>Pn.m.o.sample_treatment, </em>with Pn: platen-number, m: spectrum number (order of the measurements); o: point-number, of the position on the sample, sample_treatment with "p" for pristine. The authors thank Sigrid Benemann, who performed the SEM measurements.
DOI: 10.5281/zenodo.7986673
title: Physico-chemical characterization of Ce0.9Zr0.1O2 nanoparticles by XPS / HAXPES / SEM

description: Here a dataset of XPS, HAXPES and SEM measurements for the physico-chemical characterization of nanoparticles is presented. The measurements are part of the H2020 project “NanoSolveIT”. Ce<sub>0.9</sub>Zr<sub>0.1</sub>O<sub>2</sub> nanoparticles were provided by Promethean Particles (EMR identifier in the project: ERM00000399). Prior to the measurements, the samples were prepared from the solution as drop cast on Si wafers. First SEM and EDS measurements were performed, followed by XPS and HAXPES measurements on the same samples. Here at first survey spectra were recorded followed by high resolution spectra. For XPS / HAXPES several Si-wafers were mounted together on one platen. The platen was left in the intro chamber of the instrument for several hours before the measurement started. Equipment: SEM images were acquired with a <em>Supra 40 </em>(Zeiss) SEM equipped with a <em>Quantax 400 </em>(Bruker) SDD EDS spectrometer. For X-ray spectroscopy experiments, a combined XPS / HAXPES spectrometer (<em>Quantes </em>from ULVAC-PHI) was used, where XPS is measured at 1486.6 eV (monochromatic Al Kα source) and HAXPES at 5414.9 eV (monochromatic Cr Kα source). Here it is possible to perform the measurements at the exact same position. Data: For SEM, the data are given in .tif format. For XPS / HAXPES the raw data are given as .spe (PHI format) and .npl (VAMAS format) files. The measurement conditions are given in the data files. Naming of data: SEM: <em>sample_treatment (n)</em>, with n a consecutive number. XPS / HAXPES: For the .spe and for the corresponding .npl files <em>Pn.m.o.sample_treatment, </em>with Pn: platen-number, m: spectrum number (order of the measurements); o: point-number, of the position on the sample, sample_treatment with "p" for pristine. The authors thank Sigrid Benemann, who performed the SEM measurements.
DOI: 10.5281/zenodo.6581044
title: A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea - supplementary information

description: <strong>Supplementary information for ‘A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea’</strong>
DOI: 10.5281/zenodo.6581045
title: A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea - supplementary information

description: <strong>Supplementary information for ‘A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea’</strong>
DOI: 10.5281/zenodo.7986704
title: A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea - supplementary information

description: <strong>Supplementary information for ‘A genomic assessment of the marine-speciation paradox within the toothed whale superfamily Delphinoidea’</strong>
DOI: 10.5281/zenodo.6913133
title: wiki-category-consistency-cache

description: A collection of SQLite database files containing all the data retrieved from the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01 in the context of analyzing the consistency between Wikipedia and Wikidata categories.<br> <br> Detailed information can be found on the Github page.
DOI: 10.5281/zenodo.6913134
title: wiki-category-consistency-cache

description: A collection of SQLite database files containing all the data retrieved from the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01 in the context of analyzing the consistency between Wikipedia and Wikidata categories.<br> <br> Detailed information can be found on the Github page.
DOI: 10.2908/tour_dem_exq
title: Dépenses par motif, durée, destination et sexe du touriste (1996-2011)
title: Expenditure by purpose, duration, destination and sex of the tourist (1996-2011)
title: Ausgaben nach Zweck, Dauer, Zielort und Geschlecht des Reisenden (1996-2011)
DOI: 10.2908/tour_dem_tnq
title: Übernachtungen nach Zweck, Dauer, Zielort und Geschlecht des Reisenden (1996-2011)
title: Nuitées par motif, durée, destination et sexe du touriste (1996-2011)
title: Nights spent by purpose, duration, destination and sex of the tourist (1996-2011)
DOI: 10.2908/tour_dem_toq
title: Teilnahme am Tourismus nach Zielort, Zweck, Dauer und Geschlecht des Reisenden (1996-2011)
title: Persons participating in tourism by destination, purpose, duration and sex of the tourist 1996-2011)
title: Personnes participant au tourisme par destination, motif, durée et sexe du touriste (1996-2011)
DOI: 10.2908/tour_dem_ttq
title: Trips by purpose, duration, destination and sex of the tourist (1996-2011)
title: Reisen nach Zweck, Dauer, Zielort und Geschlecht des Reisenden (1996-2011)
title: Voyages par motif, durée, destination et par sexe du touriste (1996-2011)
DOI: 10.2908/tour_dem_ttq1
title: Trips by purpose, duration, destination and main mode of accommodation (1996-2011)
title: Voyages par motif, durée, destination et mode d’hébergement principal (1996-2011)
title: Reisen nach Zweck, Dauer, Zielort und Hauptunterkunftsart (1996-2011)
DOI: 10.2908/tour_dem_ttq2
title: Trips by purpose, duration, destination and month of departure (1996-2011)
title: Voyages par motif, durée, destination et mois de départ (1996-2011)
title: Reisen nach Zweck, Dauer, Zielort und Abreisemonat (1996-2011)
DOI: 10.5281/zenodo.7899785
title: Oxygen availability and body mass modulate ectotherm responses to ocean warming

description: Data and analysis scripts for the following publication: Duncan et al. In press. Oxygen availability and body mass regulate ectotherm responses to ocean warming. Nature communications <em>Analysis_script.R</em> is the R script to carry out the main analysis in the manuscript. <em>data.csv</em> is the physiology data to carry out the main analysis in the manuscript. <em>current_bottom_oxy_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>current_bottom_salt_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>current_bottom_temp_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>future_bottom_oxy_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>future_bottom_salt_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>future_bottom_temp_monthly.Rda</em> is an environmental layer used to carry out the distribution modelling in the manuscript. <em>raw respirometry data.zip</em> is the raw respirometry data collected during the experiments for the manuscript. <em>raw_meta_data.xlsx</em> is the meta data related to the respirometry data collected during the experiments. <em>raw_resp_data_script.R</em> is the R script to quantify physiological metrics from experimental data.
DOI: 10.34740/kaggle/dsv/5813102
title: Nigerian Presidential Election 2023 Tweets
DOI: 10.5281/zenodo.6913282
title: wiki-category-consistency-dataset

description: Candidate generation and cleaning results produced in the context of analyzing the consistency between Wikipedia and Wikidata categories using the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01. Detailed information can be found on the Github page.
DOI: 10.5281/zenodo.6913281
title: wiki-category-consistency-dataset

description: Candidate generation and cleaning results produced in the context of analyzing the consistency between Wikipedia and Wikidata categories using the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01. Detailed information can be found on the Github page.
DOI: 10.5281/zenodo.6913331
title: wiki-category-consistency-eval

description: Experiment results produced in the context of analyzing the consistency between Wikipedia and Wikidata categories using the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01. Detailed information can be found on the Github page.
DOI: 10.5281/zenodo.6913332
title: wiki-category-consistency-eval

description: Experiment results produced in the context of analyzing the consistency between Wikipedia and Wikidata categories using the Wikidata JSON dump of 2022-05-02 and the Wikipedia SQL dumps of 2022-05-01. Detailed information can be found on the Github page.
DOI: 10.5066/p9gi61nv
title: Horizontal-to-Vertical Spectral Ratio (HVSR) Soundings and Depth-to-Bedrock Data for the Owasco Inlet Watershed, Cayuga and Tompkins Counties, New York 2016

description: In 2016, the U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, collected horizontal-to-vertical seismic soundings at 31 locations in the Owasco Inlet valley, Cayuga and Tompkins Counties, New York to help determine thickness of the unconsolidated deposits. The HVSR technique, commonly referred to as the passive-seismic method, is used to estimate the thickness of unconsolidated sediments and the depth to bedrock (Lane and others, 2008; Fairchild and others, 2013). The passive-seismic method uses a single, broad-band three-component (two horizontal and one vertical) seismometer to record ambient seismic noise. In areas that have a strong acoustic contrast between the bedrock and overlying sediments, the seismic noise induces resonance at frequencies that range from about 0.3 to 40 Hz. The ratio of the average horizontal-to-vertical spectrums produces a spectral-ratio curve with peaks at fundamental and higher-order resonance frequencies. The spectral ratio curve (the ratio of the averaged horizontal-to-vertical component spectrums) is used to determine the fundamental resonance frequency that can be used along with an average shear-wave velocity or a power-law regression equation to estimate sediment thickness and depth to bedrock (Lane and others, 2008; Brown and others, 2013; Fairchild and others, 2013; Chandler and others, 2014; and Johnson and Lane, 2016). The HVSR data presented in this data release were collected at each site for 30 minutes using a Tromino Model TEP-3C three-component seismometer. The data were processed with Grilla 2012 version 6.2 software to: 1) remove anthropogenic noise, 2) convert the time-domain data to frequency domain, 3) compute and plot the spectral ratio curve, and 4) determine the resonance frequency. This data release presents the resonance frequency peaks identified from the HVSR measurements. Raw and processed HVSR data for each HVSR measurement are presented in the attached files. The HVSR data-collection sites are designated by a county sequential numbering system (CYHVSR1, TMVSR64, etc. where "CY" indicates Cayuga County and "TM" indicates Tompkins County).
DOI: 10.6084/m9.figshare.23261501
title: Source Data FIle

description: The Souce Data file
DOI: 10.6084/m9.figshare.23261501.v1
title: Source Data FIle

description: The Souce Data file
DOI: 10.5281/zenodo.6956562
title: openthesaurus_dump_20220530

description: OpenThesaurus Dump Version used in the context of evaluating data augmentation for Named Entity Recognition over the German legal domain (Detailed information can be found on the Github page) This OpenThesaurus mySQL-Dump version was downloaded on the 30th of May 2022 from: https://www.openthesaurus.de/about/download . This data is made available under the Creative Commons Attribution-ShareAlike 4.0 or the GNU Lesser General Public License.
DOI: 10.5281/zenodo.6956563
title: openthesaurus_dump_20220530

description: OpenThesaurus Dump Version used in the context of evaluating data augmentation for Named Entity Recognition over the German legal domain (Detailed information can be found on the Github page) This OpenThesaurus mySQL-Dump version was downloaded on the 30th of May 2022 from: https://www.openthesaurus.de/about/download . This data is made available under the Creative Commons Attribution-ShareAlike 4.0 or the GNU Lesser General Public License.