cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0161914.10fu
title: SH0161914.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0161915.10fu
title: SH0161915.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.9wt8u9
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Anthemis hydruntina E.Groves",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287726-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bbcep4
title: Occurrence Download

description: A dataset containing 314 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rubus steracanthos P.J.Müll. ex Boulay",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 314 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290324-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/2rbs-7m49
title: Laser fluorination analysis
DOI: 10.15468/dl.czeebm
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thesium ebracteatum Hayne",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 992 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287330-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/km0m-0p38
title: Laser fluorination analysis
DOI: 10.60707/th82-qz83
title: Laser fluorination analysis
DOI: 10.60707/w65d-v386
title: Laser fluorination analysis
DOI: 10.15468/dl.d54vvd
title: Occurrence Download

description: A dataset containing 412 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Biscutella mediterranea Jord.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 412 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289489-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/z96t-9p57
title: Laser fluorination analysis
DOI: 10.60707/jmnb-rn32
title: Laser fluorination analysis
DOI: 10.60707/k39c-sx93
title: Laser fluorination analysis
DOI: 10.15468/dl.8rhcgh
title: Occurrence Download

description: A dataset containing 52721 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium pumilum Murray",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 52721 records from 256 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297965-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a7y4qp
title: Occurrence Download

description: A dataset containing 16867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Herminium monorchis (L.) R.Br.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16867 records from 157 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299002-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2je69
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Platanthera algeriensis Batt. & Trab.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 190 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0294403-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ammmr8
title: Occurrence Download

description: A dataset containing 204 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saponaria calabrica Guss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 204 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289429-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8kz5w
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hibiscus palustris Thore, 1803",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299067-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4zz47
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thymus richardii Pers.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 137 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236847-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqewcv
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Borago pygmaea (DC.) Chater & Greuter",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 161 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289580-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7wnad
title: Occurrence Download

description: A dataset containing 289 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Papaver bracteatum Lindl.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 289 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155136-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/hh2k-9328
title: 3d SLS scan of OREX-800017-0
DOI: 10.60707/fymn-n257
title: 3d SLS scan of OREX-800017-0
DOI: 10.60707/gn10-hs06
title: 3d SLS scan of OREX-800019-0
DOI: 10.15468/dl.chjqmc
title: Occurrence Download

description: A dataset containing 1936 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporobolus vaginiflorus (Torr. ex A.Gray) Alph.Wood",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1936 records from 95 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288006-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bcf6su
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arenaria humifusa Wahlenb. ex Nordh.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 43 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415284-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/8arr-2e50
title: 3d SLS scan of OREX-800020-0
DOI: 10.60707/5c3w-jg67
title: 3d SLS scan of OREX-800020-0
DOI: 10.5281/zenodo.10975842
title: Atlan_et_al_2024_datasets

description: This dataset contains source data colected and used in the paper Claustrum Neurons Projecting to the Anterior Cingulate Restrict Engagement During Sleep and Behavior to be published in Nature Communications, 2024.
DOI: 10.5281/zenodo.10975841
title: Atlan_et_al_2024_datasets

description: This dataset contains source data colected and used in the paper Claustrum Neurons Projecting to the Anterior Cingulate Restrict Engagement During Sleep and Behavior to be published in Nature Communications, 2024.
DOI: 10.60707/c99t-qs13
title: 3d SLS scan of OREX-800020-0
DOI: 10.15468/dl.bhu79z
title: Occurrence Download

description: A dataset containing 670 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gypsophila perfoliata L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 670 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0298701-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d2a36u
title: Occurrence Download

description: A dataset containing 134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Campanula garganica Ten.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 134 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151456-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8xt9vf
title: Occurrence Download

description: A dataset containing 13595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Silene conica L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13595 records from 202 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288575-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cv5xta
title: Occurrence Download

description: A dataset containing 440 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abies cephalonica Loudon",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 440 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285476-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/pz61-0707
title: 3d SLS scan of OREX-800021-0
DOI: 10.15468/dl.b6qz2q
title: Occurrence Download

description: A dataset containing 1485 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pilosella densiflora (Tausch) Soják",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1485 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0295144-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60707/s4m1-4b95
title: 3d SLS scan of OREX-800021-0
DOI: 10.15468/dl.bukjs8
title: Occurrence Download

description: A dataset containing 422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vicia altissima Desf.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 422 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285896-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57966/h21e-vq42
title: Global Biodiversity Data
DOI: 10.60707/0fv7-pk20
title: 3d scan of OREX-800023-0
DOI: 10.15468/dl.c4eks6
title: Occurrence Download

description: A dataset containing 652 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aegilops umbellulata Zhuk.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 652 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0285934-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ap4guh
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ceratophyllum platyacanthum Cham.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 92 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293561-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buwsar
title: Occurrence Download

description: A dataset containing 250 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Saponaria bellidifolia Sm.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 250 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289436-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11985454
title: Nominal FAST5/FASTQ Evaluation Data Set

description: FAST5/FASTQ data used for accuracy characterization of decoding techniques applied to the HEDGEs DNA-information storage code. FASTQ data is used to evaluate the hard-decoding algorithm as explained by Press et al. in (https://doi.org/10.1073/pnas.2004821117). FAST5 data is used in evaluation for both our novel Alignment Matrix soft decoder (https://doi.org/10.5281/zenodo.11454877), and the soft decoder developed by Chandak et al. in the publication (10.1109/ICASSP40776.2020.9053441). Our code repository at https://doi.org/10.5281/zenodo.11454877 includes a GPU accelerated adaptation of Chandak et al.’s algorithm in order to scale analysis on the submitted FAST5 data, and this is the version of code used to evaluate the algorithm’s accuracy and runtime overhead.

 

Within the archive there are several sub-archives. Explanations for each sub-archive can be found for the corresponding archive name within the README.md file.
DOI: 10.5281/zenodo.11985455
title: Nominal FAST5/FASTQ Evaluation Data Set

description: FAST5/FASTQ data used for accuracy characterization of decoding techniques applied to the HEDGEs DNA-information storage code. FASTQ data is used to evaluate the hard-decoding algorithm as explained by Press et al. in (https://doi.org/10.1073/pnas.2004821117). FAST5 data is used in evaluation for both our novel Alignment Matrix soft decoder (https://doi.org/10.5281/zenodo.11454877), and the soft decoder developed by Chandak et al. in the publication (10.1109/ICASSP40776.2020.9053441). Our code repository at https://doi.org/10.5281/zenodo.11454877 includes a GPU accelerated adaptation of Chandak et al.’s algorithm in order to scale analysis on the submitted FAST5 data, and this is the version of code used to evaluate the algorithm’s accuracy and runtime overhead.

 

Within the archive there are several sub-archives. Explanations for each sub-archive can be found for the corresponding archive name within the README.md file.
DOI: 10.15468/dl.cbfrpb
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alchemilla hirsutissima Juz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286504-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9cmnb7
title: Occurrence Download

description: A dataset containing 73258 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chrysosplenium alternifolium L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 73258 records from 347 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0258609-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wv8ur
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Festuca versicolor Tausch",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 39 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297450-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4dfr6b
title: Occurrence Download

description: A dataset containing 164 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mentzelia strictissima"
 ]
}

 The dataset includes 164 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008274-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rqscfc
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Rheinardia ocellata (D.G.Elliot, 1871)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 17 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009863-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e9dwbj
title: Occurrence Download

description: A dataset containing 1481 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Asparagus plumosus Baker"
 ]
}

 The dataset includes 1481 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292265-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d8u9h4
title: Occurrence Download

description: A dataset containing 5227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "TaxonKey is Acer palmatum Thunb.",
 "Year 1992-2022"
 ]
}

 The dataset includes 5227 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238146-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfrbp5
title: Occurrence Download

description: A dataset containing 1984018 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "Month is January",
 "Month is February",
 "Month is March",
 "Month is April",
 "Month is May"
 ]
 },
 "OccurrenceStatus is Present",
 "Year 2018-2018"
 ]
}

 The dataset includes 1984018 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037278-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rsrlvf
title: Occurrence Download

description: A dataset containing 1025 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gastrotheca riobambae (Fowler, 1913)"
 ]
}

 The dataset includes 1025 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009864-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.udnzsq
title: Occurrence Download

description: A dataset containing 452 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cecropia schreberiana Miq."
 ]
}

 The dataset includes 452 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0292272-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.