cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17026/dans-zwc-8g2y
title: Kadastrale kaart - versie februari 2017

description: De digitale Kadastrale Kaart geeft een overzicht van de perceelsgewijze indeling van Nederland.DANS en het Kadaster werken samen met betrekking tot het duurzaam archiveren en beschikbaar stellen van topografische en kadastrale kaarten. Iedereen mag deze data gebruiken.De samenwerking met het Kadaster betreft verder de volgende topografische bestanden: TOP50Vector, TOP250Raster, TOP50Raster, TOP25Raster, de Kadastrale Kaart, TOP10NL, TOP50Vector, TOP50NL, en TOP10Vector.Zie ook het overzicht van de Kadasterbestanden die via DANS beschikbaar zijn.De meest actuele versies van de Kadasterbestanden kunnen direct gedownload worden via de website van Publieke Dienstverlening op de Kaart - PDOK.In het informatieblad vindt u meer informatie over toegang tot de Kadastrale Kaart.
DOI: 10.17026/dans-ztf-vrz9
title: Side-Channel Based Intrusion Detection for Industrial Control Systems: Side-Channel Based Intrusion Detection for Industrial Control Systems: electromagnetic traces

description: Raw EM traces that were used to generate the results used in 'Side-Channel Based Intrusion Detection for Industrial Control Systems' (doi:10.1007/978-3-319-99843-5_19) and 'Security and Privacy in the Smart Grid' (PhD Thesis, ISBN 978-94-6473-209-2).Industrial Control Systems are under increased scrutiny. Their security is historically sub-par, and although measures are being taken by the manufacturers to remedy this, the large installed base of legacy systems cannot easily be updated with state-of-the-art security measures. In these publications we use a technique from cryptographic side-channel analysis, multivariate templating, to detect anomalous behaviour in Programmable Logic Controllers. Our solution uses side-channel measurements of the electromagnetic emissions of an industrial control system to detect behavioural changes of the software running on them. To demonstrate the feasibility of this method, we show it is possible to profile and distinguish between even small changes in programs on Siemens S7-317 PLCs, using methods from cryptographic side-channel analysis.This dataset consists of raw electromagnetic trace files captured on 2017-05-27. It can be used to reproduce the results in the aforementioned publications. For three different programs, 16 different inputs were captured. Each input has 100.000 traces.Analysis (& capturing) code is available as a separate dataset at doi:10.17026/dans-x7m-6222.Please note that although this dataset of EM traces is published under CC0 -- effectively waiving all copyright and related or neighbouring rights -- the *code* dataset is licensed under GPLv3 and thus subject to the limitations of that license.
DOI: 10.17026/dans-xkm-7v5r
title: TOP10NL, digitaal topografisch bestand - versie april 2013

description: TOP10NL is een digitaal topografisch bestand, bruikbaar op een schaalniveau tussen 1:5.000 en 1:25.000.DANS en het Kadaster werken samen met betrekking tot het duurzaam archiveren en beschikbaar stellen van topografische en kadastrale kaarten. Iedereen mag deze data gebruiken.Het betreft de volgende topografische bestanden: TOP50Vector, TOP250Raster, TOP50Raster, TOP25Raster, de Kadastrale Kaart, TOP10NL, TOP50Vector, TOP50NL, en TOP10Vector.Zie ook het overzicht van de Kadasterbestanden die via DANS beschikbaar zijn.De meest actuele versies van de Kadasterbestanden kunnen direct gedownload worden via de website van Publieke Dienstverlening op de Kaart – PDOK.In het informatieblad vindt u meer informatie over toegang tot de TOP-kaart.
DOI: 10.17026/dans-zk4-aq5x
title: Dataset: output related to the paper 'Event detection in Twitter: A machine-learning approach based on term pivoting'

description: This dataset features the output of intermediate steps and the final output of the research that is described in the paper: F. Kunneman and A. Van den Bosch (2014), Event detection in Twitter: A machine-learning approach based on term pivoting, In: F. Grootjen, M. Otworowska, and J. Kwisthout (Eds.), Proceedings of the 26th Benelux Conference on Artificial Intelligence, pp. 65-72,http://hdl.handle.net/2066/132203The paper describes an approach to extracting events (of all types) from Twitter by identifying words that are suddenly mentioned frequently in tweets, clustering similar terms together and training a model to distinguish significant from insignificant event clusters. The current dataset features the word counts that are used to find words with a sudden high frequency, the clusters of such words, and the classification decisions for event significance.  Tweets relate to the following period: June 22nd 2013 - August 22nd 2013.
DOI: 10.25345/c5m03z77b
title: MassIVE MSV000093596 - Organische componenten in water (20 bronnen) -
title: Organische componenten in water (20 bronnen) - Organische componenten in water (20 bronnen) - Organische componenten in water (20 bronnen) -
DOI: 10.5281/zenodo.10283210
title: Long read genome assembly of species from the synthetic HAMBI bacterial community

description: We present complete genome sequences of 30 bacterial species that can be used to construct defined synthetic communities that stably form in the laboratory under controlled conditions.
This repository contains the final genome assemblies, logs, reports/summaries, scripts, and associated computational methods. All genomes were circularized (or in the case of Agrobacterium tumefaciens properly linearized) with the recovery of some small plasmids.
30 Species from the HAMBI community were sent for Oxford Nanopore or PacBio HiFi sequencing at SeqCenter early November 2022. I assembled multiple subsets of the read data for each genome and generated consensus assemblies using Trycycler.
All sequence data is available under BioProject PRJNA1047486
This is a mirror of the repository here: https://gitlab.utu.fi/slhogl/hambiLongRead
DOI: 10.5281/zenodo.10283209
title: Long read genome assembly of species from the synthetic HAMBI bacterial community

description: We present complete genome sequences of 30 bacterial species that can be used to construct defined synthetic communities that stably form in the laboratory under controlled conditions.
This repository contains the final genome assemblies, logs, reports/summaries, scripts, and associated computational methods. All genomes were circularized (or in the case of Agrobacterium tumefaciens properly linearized) with the recovery of some small plasmids.
30 Species from the HAMBI community were sent for Oxford Nanopore or PacBio HiFi sequencing at SeqCenter early November 2022. I assembled multiple subsets of the read data for each genome and generated consensus assemblies using Trycycler.
All sequence data is available under BioProject PRJNA1047486
This is a mirror of the repository here: https://gitlab.utu.fi/slhogl/hambiLongRead
DOI: 10.34740/kaggle/dsv/7146550
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.24763686
title: <b>Evaluation of the wettability of complete denture base materials constructed by conventional and digital techniques: An in-vitro study</b>

description: Decreased salivary flow can make the patients uncomfortable with their complete dentures and affects the retention of the dentures. Milling and 3D printing have become an alternative to conventional denture construction techniques. The goal of this study was to evaluate the effect of conventional and digital techniques of the complete denture construction on the denture surface wettability with distilled water and saliva substitute before and after thermocycling.
DOI: 10.5281/zenodo.10283305
title: Unveiling A Hidden Burden: Exploring Sarcopenia in Hospitalized Older Patients through Concordance and Cluster Analysis
DOI: 10.5281/zenodo.10283304
title: Unveiling A Hidden Burden: Exploring Sarcopenia in Hospitalized Older Patients through Concordance and Cluster Analysis
DOI: 10.34740/kaggle/dsv/7146555
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10275894
title: Metadata crosswalks for software management plans at NFDI4DS hackathon maSMP 2023

description: Software Management Plans (SMPs) help formalize a set of structures and goals that ensure the research software is accessible and reusable in the short, medium and long term. Although not as common as the Data Management Plans, SMPs are gaining attention, with different communities providing examples and guidance on around it (e.g., ELIXIR SMPs, eScience Center in the Netherlands SMP Guidance and the Max Plank Digital Libraries SMP).
Machine-actionable SMPs (maSMPs) aim at providing a semantic layer on top of SMPs in the form of metadata schemas. Based on the ELIXIR SMPs and inspired by the work done on the Research Data Alliance (RDA) machine-actionable Data Management Plan (maDMP) application profile, the SemTec team at ZB MED has created an maSMP metadata schema using schema.org as base vocabulary. 
The latest version of such maSMP metadata schema takes advantage of the crosswalks created at the NFDI4DS hackathon on maSMPs 2023.11.28 to 2023-12-01 organized by the SemTec team at ZB MED. The crosswalks data corresponding to Max Plank Digital Library SMP, ELIXIR SMPs, and DataCite Metadata Schema 4.4 - OutputManagementPlan are included in this dataset collection. The files in the dataset collection are:

"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - Software.csv" - Crosswalk from the maSMP vr 2.0.0 to the Max Plank Digital Library SMP, SOMEF, and ELIXIR SMPs
"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - MngPlan.csv" - Crosswalk from the maSMP to DataCite Metadata Schema 4.4 - OutputManagementPlan and the Max Plank Digital Library SMP
"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - RDMO-SMP.csv" - Crosswalk from the Max Plank Digital Library SMP to metadata properties from different vocabularies
"Tables description.png" - Image showing a crosswalk template
We acknowledge the feedback provided by other participants in the NFDI4DS hackathon on maSMPs (Esteban Gonzalez ORCID:0000-0003-4112-6825, Yves Vincent Grossmann ORCID:0000-0002-2880-8947, Carlos Utrilla Guerrero ORCID:0000-0002-9994-1462, Mariaisabel Gonzalez-Ocanto ORCID:0000-0001-5485-9724,Thomas Pronk ORCID:0000-0001-9334-7190, David Wallace ORCID:0000-0001-8958-4601, Jürgen Windeck ORCID:0000-0003-1909-4353).
The maSMP project is part of the NFDI4DataScience project funded by the German Research Foundation (DFG), project number 460234259. This dataset was created during the NFDI4DS hackathon on maSMPs at ZB MED 2023.
DOI: 10.5281/zenodo.10275895
title: Metadata crosswalks for software management plans at NFDI4DS hackathon maSMP 2023

description: Software Management Plans (SMPs) help formalize a set of structures and goals that ensure the research software is accessible and reusable in the short, medium and long term. Although not as common as the Data Management Plans, SMPs are gaining attention, with different communities providing examples and guidance on around it (e.g., ELIXIR SMPs, eScience Center in the Netherlands SMP Guidance and the Max Plank Digital Libraries SMP).
Machine-actionable SMPs (maSMPs) aim at providing a semantic layer on top of SMPs in the form of metadata schemas. Based on the ELIXIR SMPs and inspired by the work done on the Research Data Alliance (RDA) machine-actionable Data Management Plan (maDMP) application profile, the SemTec team at ZB MED has created an maSMP metadata schema using schema.org as base vocabulary. 
The latest version of such maSMP metadata schema takes advantage of the crosswalks created at the NFDI4DS hackathon on maSMPs 2023.11.28 to 2023-12-01 organized by the SemTec team at ZB MED. The crosswalks data corresponding to Max Plank Digital Library SMP, ELIXIR SMPs, and DataCite Metadata Schema 4.4 - OutputManagementPlan are included in this dataset collection. The files in the dataset collection are:

"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - Software.csv" - Crosswalk from the maSMP vr 2.0.0 to the Max Plank Digital Library SMP, SOMEF, and ELIXIR SMPs
"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - MngPlan.csv" - Crosswalk from the maSMP to DataCite Metadata Schema 4.4 - OutputManagementPlan and the Max Plank Digital Library SMP
"2023.11.29 maSMP crosswalk - NFDI4DS hackathon - RDMO-SMP.csv" - Crosswalk from the Max Plank Digital Library SMP to metadata properties from different vocabularies
"Tables description.png" - Image showing a crosswalk template
We acknowledge the feedback provided by other participants in the NFDI4DS hackathon on maSMPs (Esteban Gonzalez ORCID:0000-0003-4112-6825, Yves Vincent Grossmann ORCID:0000-0002-2880-8947, Carlos Utrilla Guerrero ORCID:0000-0002-9994-1462, Mariaisabel Gonzalez-Ocanto ORCID:0000-0001-5485-9724,Thomas Pronk ORCID:0000-0001-9334-7190, David Wallace ORCID:0000-0001-8958-4601, Jürgen Windeck ORCID:0000-0003-1909-4353).
The maSMP project is part of the NFDI4DataScience project funded by the German Research Foundation (DFG), project number 460234259. This dataset was created during the NFDI4DS hackathon on maSMPs at ZB MED 2023.
DOI: 10.5281/zenodo.10283310
title: Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods.

description: Alignements from the paper "Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods" submitted to Molecular Biology and Evolution.
File "concatenation_382NuclearGenes.fas" corresponds to the concatenation of 382 nuclear genes for 26 Isopod species. File "concatenation_12MtGenes.fas" corresponds to the concatenation of 12 mitochondrial protein coding genes (cytb, cox1, cox2, cox3, atp6, nad1, nad2, nad3, nad4, nad4l, nad5, nad6 ). Genes were aligned with PRANK (Löytynoja and Goldman, 2008) and sites ambiguously aligned were removed with Gblocks (Castresana, 2000).
 
File "Opsine1_cds.fas" corresponds to the alignement of the coding part of the Opsin 1 gene for 26 Isopod species. Intron has been removed as well as non-sens mutations.
 
26 Mitochondrial genomes: we reconstructed mitochondrial genomes using both the de novo transcriptome assemblies from Francois et al. (2016) and low coverage genome sequencing reads available for 22 species from Lef ebure et al. (2017). Since mitochondrial genomes are present in multiple copies per cell, a very low sequencing effort is sufficient to yield a high coverage for mitochondrial sequences. Using the DNA-seq reads, mitogenomes were assembled with MITObim (Hahn et al. 2013) using the COI gene as a seed to build the complete mitogenome. All annotated genome have been deposited in the ENA project PRJEB14193.
DOI: 10.5281/zenodo.1409531
title: Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods.

description: Alignements from the paper "Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods" submitted to Molecular Biology and Evolution.
File "concatenation_382NuclearGenes.fas" corresponds to the concatenation of 382 nuclear genes for 26 Isopod species. File "concatenation_12MtGenes.fas" corresponds to the concatenation of 12 mitochondrial protein coding genes (cytb, cox1, cox2, cox3, atp6, nad1, nad2, nad3, nad4, nad4l, nad5, nad6 ). Genes were aligned with PRANK (Löytynoja and Goldman, 2008) and sites ambiguously aligned were removed with Gblocks (Castresana, 2000).
 
File "Opsine1_cds.fas" corresponds to the alignement of the coding part of the Opsin 1 gene for 26 Isopod species. Intron has been removed as well as non-sens mutations.
 
26 Mitochondrial genomes: we reconstructed mitochondrial genomes using both the de novo transcriptome assemblies from Francois et al. (2016) and low coverage genome sequencing reads available for 22 species from Lef ebure et al. (2017). Since mitochondrial genomes are present in multiple copies per cell, a very low sequencing effort is sufficient to yield a high coverage for mitochondrial sequences. Using the DNA-seq reads, mitogenomes were assembled with MITObim (Hahn et al. 2013) using the COI gene as a seed to build the complete mitogenome. All annotated genome have been deposited in the ENA project PRJEB14193.
DOI: 10.5281/zenodo.1409532
title: Life History Traits Impact The Nuclear Rate Of Substitution But Not The Mitochondrial Rate In Isopods.

description: Alignements from the paper "Life history traits impact the nuclear rate of substitution but not the mitochondrial rate in isopods" submitted to Molecular Biology and Evolution.

File "concatenation_382NuclearGenes.fas" corresponds to the concatenation of 382 nuclear genes for 26 Isopod species. File "concatenation_12MtGenes.fas" corresponds to the concatenation of 12 mitochondrial protein coding genes (cytb, cox1, cox2, cox3, atp6, nad1, nad2, nad3, nad4, nad4l, nad5, nad6 ). Genes were aligned with PRANK (Löytynoja and Goldman, 2008) and sites ambiguously aligned were removed with Gblocks (Castresana, 2000).

 

File "Opsine1_cds.fas" corresponds to the alignement of the coding part of the Opsin 1 gene for 26 Isopod species. Intron has been removed as well as non-sens mutations.
DOI: 10.6084/m9.figshare.24763470
title: Magnaporthe oryzae RNA-seq raw data

description: This project presents the raw data files of RNA-seq from the fungus Magnaporthe oryzae wildtype strain 70-15. The different datasets are from a time course analysis under different stress conditions (different stimuli). The stimuli used are salt stress (KCl), Osmo-/sugarstress (sorbitol) and fungicide stress (fludioxonil). The concentrations and timepoints after application is given in the filenames.
DOI: 10.6084/m9.figshare.24763470.v1
title: Magnaporthe oryzae RNA-seq raw data

description: This project presents the raw data files of RNA-seq from the fungus Magnaporthe oryzae wildtype strain 70-15. The different datasets are from a time course analysis under different stress conditions (different stimuli). The stimuli used are salt stress (KCl), Osmo-/sugarstress (sorbitol) and fungicide stress (fludioxonil). The concentrations and timepoints after application is given in the filenames.
DOI: 10.5258/soton/d2880
title: Dataset supporting the University of Southampton Doctoral Thesis "Multiple Layer Channel Estimation for mmWave Communications"

description: This dataset supports the thesis "Multiple Layer Channel Estimation for mmWave Communications" by Y Zhang.

This dataset contains: several folders, each folder is named according to its content, where the curves of each figure are stored in mat files. To regenerate the results, please use the Matlab.

The data will become available after the embargo ends on 31/12/2024
DOI: 10.5281/zenodo.10283429
title: Accretion in the recurrent nova T CrB: Linking the superactive state to the predicted outburst

description: UBV photometry of the recurrent nova T CrB
DOI: 10.5281/zenodo.10283430
title: Accretion in the recurrent nova T CrB: Linking the superactive state to the predicted outburst

description: UBV photometry of the recurrent nova T CrB
DOI: 10.5281/zenodo.10054404
title: Overview of Research Data Sharing Policies Across Various Scientific Publishers

description: Context 
With the aim of advancing trust in published research, (scientific) publishers are developing Research Data Sharing Policies for their portfolio. Some publishers have the same policy across all journals. For example for the publishers Frontiers and Springer-Nature, a Data Availability statement is mandatory for all journals in their portfolio. While other publishers have different policy levels depending on the journal (e.g. Elsevier, American Chemical Society). In this list, one will find a short overview of Research Data Sharing Policies across publishers (mostly relevant to the Faculty of Science at Utrecht University).
Limitations
The list of publishers does not encompass all scientific publishers. Some  Research Data Sharing Policies might be subjected to change.
DOI: 10.6084/m9.figshare.23501907
title: Supplemental Tables and Excel files for lifelong exercise transcritpome responses to exercise in slow and fast muscle fibers.

description: We investigated fast and slow muscle fiber transcriptome exercise dynamics among three groups of men: Lifelong exercisers (LLE, n=8, 74±1 y), old healthy non-exercisers (OH, n=9, 75±1 y), and young exercisers (YE, n=8, 25±1 y).  On average, LLE had exercised ~4d•wk-1 for ~8h•wk-1 over 53±2 years.  Muscle biopsies were obtained pre- and 4h post-resistance exercise (3x10 knee extensions at 70% 1-RM).  This study provides the first insights into fast and slow muscle fiber transcriptome dynamics with lifelong endurance exercise.  The fast fibers were more responsive to exercise with divergent transcriptome signatures among young exercisers (growth and metabolic), lifelong exercisers (metabolic) and old healthy non-exercisers (stress).  Only lifelong exercisers had a biological response in slow fibers (metabolic).  These data provide novel insights into fast and slow muscle fiber health at the molecular level with age and exercise.  The study was approved by the Institutional Review Board at Ball State University.  All study procedures, risks, and benefits were explained to the subjects before giving written consent to participate.
DOI: 10.6084/m9.figshare.24763701
title: AOCG

description: <pre>### The replication package of AOCG<br><br>The repository is divided into two parts: datasets and the code of our AOCG method.<br><br><br>### Requirements<br>```<br>- python 3.8<br>- Java 1.8.0<br>- transformers 4.5.1<br>- tree-sitter 0.2.2<br>- Pytorch 1.7.1<br>```<br><br>### Data Preprocessing<br>```<br>Experimental datasets contain the API_SUM dataset, the Hearthstone dataset, and the MBPP dataset. We use tree sitter tool to automatically extract the API terms and sketches of programs.<br><br>Take the MBPP dataset as an example:<br><br>To extract API terms, run 'data_process/api_extract.py' and acquire the 'api_terms.jsonl' <br><br>To extract sketches, run 'data_process/sketch_extract.py' and acquire the 'sketches.jsonl' <br><br>Put the API terms, sketches, complete codes, and requirements into the 'final_train.jsonl' and 'final_test.jsonl'.<br><br>```<br><br><br>### Training<br>Given a specific requirement, the APIer predicts API terms, and the Sketcher outputs corresponding the sketch based on the API terms and requirements. And the Coder fills the sketch to a complete program according to the API terms, sketch and requirement.<br><br>```<br>export CUDA_VISIBLE_DEVICES=0<br><br>python AOCG_finetune.py \<br>--stage_1 nl_pp \<br>--stage_2 nl_pp_ss \<br>--stage_3 nl_ss_pp_code \<br>--local_rank -1 <br><br>```<br><br><br>### Inference<br>The AOCG predicts code snippets in a progressive generation manner, and write the predicted codes into 'xx.output'.<br><br>```<br>export CUDA_VISIBLE_DEVICES=0<br><br>python AOCG_inference.py \<br>--stage_1 nl_pp \<br>--stage_2 nl_pp_ss \<br>--stage_3 nl_ss_pp_code \<br>--local_rank -1 <br><br>```<br><br><br>### Evaluation<br>```<br>After acquiring the generated codes, evaluate the programs by running 'evaluator/evaluation.py'.<br><br>```</pre>