cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14073984.v1
title: Identification and validation of a new gene signature predicting prognosis of hepatocellular carcinoma patients by network analysis of stemness indices

description: <b>Background</b>: Stem cells play an important role in hepatocellular carcinoma (HCC). However, their precise effect on HCC tumorigenesis and progression remains unclear. The present study aimed to characterize stem cell-related gene expression in HCC. <b>Methods</b>: The mRNA expression-based stemness index (mRNAsi) was used to analyze the clinical characteristics and prognosis of HCC patients. The weighted gene co-expression network analysis (WGCNA) was used to construct a gene co-expression network of 374 HCC patients. Finally, six genes were used to construct the prognosis signature. <b>Results</b>: HCC patients had a higher mRNAsi score than healthy people, suggesting poor prognosis. Two gene modules highly related to mRNAsi were identified. Multivariate Cox analysis was carried out to establish a Cox proportional risk regression model. The risk score for each patient was the sum of the product of each gene expression and its coefficient. Survival analysis suggested that the low-risk group had a significantly better prognosis. <b>Conclusions</b>: The established six-gene signature was able to predict patient prognosis accurately. This new signature should be verified in prospective studies in order to determine patient prognosis in clinical decision-making.
DOI: 10.15468/86rxyj
title: 2019_Parc National de Port Cros_9

description: 2009-2016_PNPC_Cistude_Croix-Valmer:Parc National de Port Cros
DOI: 10.15468/wkeuqe
title: Rénovation du réseau électrique de la Haute Vallée de l'Aude - projet Usson Gesse Nentilla - Amphibiens - Inventaire non standardisé

description: Liste des amphibiens observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de rénovation du réseau électrique de la Haute Vallée de l'Aude. Localisation précise des observations de chaque individu.
DOI: 10.15468/vt2guh
title: Rénovation du réseau électrique de la Haute Vallée de l'Aude - projet Usson Gesse Nentilla - Invertébrés - Inventaire non standardisé

description: Liste des invertébrés observés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet de rénovation du réseau électrique de la Haute Vallée de l'Aude. Localisation précise des observations de chaque individu.
DOI: 10.15468/46qfvy
title: Parc éolien du Haut Chemin [SUIVIS 2017,2018,2019,2020]-Oiseaux - Point d'écoute

description: Liste des oiseaux contactés dans le cadre des prospections de terrain réalisées au niveau de l'aire d'étude du projet.
DOI: 10.15468/358bjm
title: 2018_Parc National de Port Cros_11

description: 2018_PNPC_TH_Caps:Parc National de Port Cros
DOI: 10.15468/s38fqf
title: 2020_NATURALIA_1

description: 2019_NATURALIA_FADDA_Z-rhadamanthus:NATURALIA
DOI: 10.6084/m9.figshare.13549903
title: Additional file 5 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 5.
DOI: 10.15468/te4ez9
title: 2020_SMIDDEV_1

description: 2019_SMIDDEV_CBE_Bagnols_en_foret:SMIDDEV
DOI: 10.6084/m9.figshare.13549903.v1
title: Additional file 5 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 5.
DOI: 10.6084/m9.figshare.13549906
title: Additional file 6 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 6.
DOI: 10.6084/m9.figshare.13549906.v1
title: Additional file 6 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 6.
DOI: 10.6084/m9.figshare.13549909
title: Additional file 7 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 7.
DOI: 10.15468/xnu364
title: 2019_LPO_1

description: 2019_LPO-Nat_FC:LPO / données fournies par LPO en 2019
DOI: 10.6084/m9.figshare.13549909.v1
title: Additional file 7 of scReQTL: an approach to correlate SNVs to gene expression from individual scRNA-seq datasets

description: Additional file 7.
DOI: 10.15468/2v5tq6
title: Demande d'autorisation environnementale - Ouverture d'une carrière - Inventaire reptiles pour un projet de Demande d'autorisation environnementale

description: Passage d'un expert herpétologue sur l'emprise durant 1 jour courant mai 2018. Prospection de l'ensemble des habitats favorables aux reptiles. Recherche à vue et dans les gîtes potentiels, recherche d'indices de présence
DOI: 10.6084/m9.figshare.11452758
title: Biochanin A attenuates myocardial ischemia/reperfusion injury through the TLR4/NF-κB/NLRP3 signaling pathway

description: Abstract Purpose: Myocardial ischemia/reperfusion (Ml/R) injury is a leading cause of damage in cardiac tissues, with high rates of mortality and disability. Biochanin A (BCA) is a main constituent of Trifolium pratense L. This study was intended to explore the effect of BCA on Ml/R injury and explore the potential mechanism. Methods: In vivo MI/R injury was established by transient coronary ligation in Sprague-Dawley rats. Triphenyltetrazolium chloride staining (TTC) was used to measure myocardial infarct size. ELISA assay was employed to evaluate the levels of myocardial enzyme and inflammatory cytokines. Western blot assay was conducted to detect related protein levels in myocardial tissues. Results: BCA significantly ameliorated myocardial infarction area, reduced the release of myocardial enzyme levels including aspartate transaminase (AST), creatine kinase (CK-MB) and lactic dehydrogenase (LDH). It also decreased the production of inflammatory cytokines (IL-1β, IL-18, IL-6 and TNF-α) in serum of Ml/R rats. Further mechanism studies demonstrated that BCA inhibited inflammatory reaction through blocking TLR4/NF-kB/NLRP3 signaling pathway. Conclusion: The present study is the first evidence demonstrating that BCA attenuated Ml/R injury through suppressing TLR4/NF-kB/NLRP3 signaling pathway-mediated anti-inflammation pathway.
DOI: 10.15468/bkvzsy
title: 2019_Mairie de Névache_1

description: 2018_MAIRIE-NEVACHE:Mairie de Névache
DOI: 10.6084/m9.figshare.11452758.v1
title: Biochanin A attenuates myocardial ischemia/reperfusion injury through the TLR4/NF-κB/NLRP3 signaling pathway

description: Abstract Purpose: Myocardial ischemia/reperfusion (Ml/R) injury is a leading cause of damage in cardiac tissues, with high rates of mortality and disability. Biochanin A (BCA) is a main constituent of Trifolium pratense L. This study was intended to explore the effect of BCA on Ml/R injury and explore the potential mechanism. Methods: In vivo MI/R injury was established by transient coronary ligation in Sprague-Dawley rats. Triphenyltetrazolium chloride staining (TTC) was used to measure myocardial infarct size. ELISA assay was employed to evaluate the levels of myocardial enzyme and inflammatory cytokines. Western blot assay was conducted to detect related protein levels in myocardial tissues. Results: BCA significantly ameliorated myocardial infarction area, reduced the release of myocardial enzyme levels including aspartate transaminase (AST), creatine kinase (CK-MB) and lactic dehydrogenase (LDH). It also decreased the production of inflammatory cytokines (IL-1β, IL-18, IL-6 and TNF-α) in serum of Ml/R rats. Further mechanism studies demonstrated that BCA inhibited inflammatory reaction through blocking TLR4/NF-kB/NLRP3 signaling pathway. Conclusion: The present study is the first evidence demonstrating that BCA attenuated Ml/R injury through suppressing TLR4/NF-kB/NLRP3 signaling pathway-mediated anti-inflammation pathway.
DOI: 10.15468/f9mqrt
title: 2018_PROSERPINE_4

description: 2018_PROSERPINE_MAURELbis:PROSERPINE
DOI: 10.15468/3pz52x
title: 2018_Parc National de Port Cros_9

description: 2018_PNPC_FauvonPelerin:Parc National de Port Cros
DOI: 10.15468/872gts
title: 2019_Auddice environnement_3

description: 2019_AUDDICE_Aiguilles:Auddice environnement
DOI: 10.15468/vb26d2
title: 2019_Alain SADORGE_1

description: 2018_SADORGE_Cerambycidae:Alain SADORGE
DOI: 10.6084/m9.figshare.13549959
title: Additional file 2 of An updated tribal classification of Lamiaceae based on plastome phylogenomics

description: Additional file 2: Table S1. Features of newly sequenced plastomes.
DOI: 10.15468/mbuj7a
title: Projet de construction de soutes de stockage pyrotechnique - Site MBDA de Selles-Saint-Denis - Chauves-souris - Points d'écoute au sol

description: Listes des chauves-souris contactées grâce à des points d'écoute au sol au niveau de l'aire d'étude du projet d'extension du site MBDA France de Selles-Saint-Denis (41)
DOI: 10.15468/zqemad
title: Inventaire des coléoptères saproxyliques de France métropolitaine - Collection de longicornes et autres coléoptères saproxyliques d'Hervé BRUSTEL

description: Il s'agit des données françaises issues de la collection d'Hervé Brustel, entomologiste et enseignant-chercheur établi dans le sud-ouest de la France (Toulouse, école d'Ingénieur de Purpan). L'ensemble des spécimens ont été déterminés initialement par H. Brustel ou d'autres spécialistes puis revus pour vérifier leur détermination avant la saisie des données. La numérisation des données de cette collection de référence française a été réalisée avec l'appui du CEN Midi-Pyrénées. Il s'agit de la saisie des cartons de Coléoptères Cerambycidae et Vesperidae, ainsi que de quelques autres familles.
DOI: 10.6084/m9.figshare.14676880
title: Additional file 1 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies

description: Additional file 1: Table S1. Mapping of cancer type barcodes from TCGA to normal tissue of tumor origin in external data sources.
DOI: 10.6084/m9.figshare.14676880.v1
title: Additional file 1 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies

description: Additional file 1: Table S1. Mapping of cancer type barcodes from TCGA to normal tissue of tumor origin in external data sources.
DOI: 10.15468/ppsze4
title: 07 - Lavilledieu - Suez - Pole de valorisation énergie matières - Inventaire reptiles pour le projet de pole de valorisation énergie matières

description: Le projet consiste en la création et l'exploitation d'un pole de valorisation de déchets (ordures ménagères, encombrants, déchets de bois, déchets d'activité économique) qui prévoit à terme, la fabrication de CSR de qualité cimentière, l'installation ayant une capacité de 60 000 t/an. Les activités de transfert, tri et préparation de CSR à partir de déchets sont soumises à autorisation environnementale au titre du Code de l'Environnement. Il s'agit d'une Installation Classée pour la Protection de l'Environnement (ICPE). Trois procédés de traitement seront déployés : un pré-tri à la pelle à grappin, un process mécanique de production de CSR DND et un process de production de CSR biomasse par broyage. Les incidences identifiées et pour lesquelles l'étude d'impact a notamment été menée concernent le milieu physique, le milieu naturel et la biodiversité, l'environnement humain, le cadre de vie et la santé publique. Sur les 19 thématiques étudiées (climat, topographie, géologie, eaux de surface, sols et eaux souterraines, risques naturels, voies de communication, réseaux, risques technologiques, qualité de l'air, bruit et vibrations, odeur, lumière, gestion des déchets, faune/flore et paysage), les impacts sont, après mesures associées (évitement / réduction), majoritairement "négatifs négligeables". Seuls deux impacts (eaux de surface et voies de communication) sont considérés comme "négatifs faibles". Aucun impact "négatif moyen" et "négatif fort" n'a été identifié.
DOI: 10.6084/m9.figshare.19470377
title: Additional file 4 of Comparative transcriptome analysis reveals significant differences in gene expression between pathogens of apple Glomerella leaf spot and apple bitter rot

description: Additional file 4: Table S5. Gene ontology enrichment of the DEGs of the Colletotrichum aenigma isolate GC20190701 and C. gloeosporioides isolate FL180906.
DOI: 10.15156/bio/sh3394793.08fu
title: SH3394793.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh565186.07fu
title: SH565186.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh565187.07fu
title: SH565187.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh565188.07fu
title: SH565188.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3394794.08fu
title: SH3394794.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3394795.08fu
title: SH3394795.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3394796.08fu
title: SH3394796.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh565189.07fu
title: SH565189.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh565190.07fu
title: SH565190.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3394797.08fu
title: SH3394797.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.