cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4926541
title: Plasticity and flexibility in the anti-predator responses of treefrog tadpoles

description: Tadpoles can respond to perceived predation risk by adjusting their life history, morphology and behavior in an adaptive way. To evolve, adaptive plasticity must be (or have been) heritable. And heritability requires that different genotypes follow different plastic rules. Using an incomplete factorial design, we analysed the environmental and parental components of variation in predator-induced life history (age and size at metamorphosis), morphology (tail depth) and behavior of Italian treefrog tadpoles (<em>Hyla intermedia</em>). Results provided strong evidence for an environmental effect on all three sets of characters. Tadpoles raised with caged predators (dragonfly larvae, gen. <em>Aeshna</em>) metamorphosed earlier (but at a similar body size) and developed deeper tails than their fullsib brothers raised without predators. When tested in experimental arenas either with or without a caged predator, all tadpoles, independent of their experience, flexibly changed their activity and position, depending on whether the cage was empty or contained the predator. Tadpoles of the two experimental groups, however, followed different flexible rules: those raised with predators were always less active than their predator-naive brothers and differences slightly increased in the presence of predators. Besides this strong environmental component of phenotypic variation, results provided evidence also for parental and parental-by-environment effects, which were strong on life-history and morphology, but weak on behavior. Interestingly, additive parental effects were explained only by dams. This supports the hypothesis that phenotypic plasticity might depend on epigenetic factors and that it might be the expression of condition-dependent mechanisms.
description: submitted to "Behavioral ecology and sociobiology"
DOI: 10.5281/zenodo.4461357
title: Plasticity and flexibility in the anti-predator responses of treefrog tadpoles

description: Tadpoles can respond to perceived predation risk by adjusting their life history, morphology and behavior in an adaptive way. To evolve, adaptive plasticity must be (or have been) heritable. And heritability requires that different genotypes follow different plastic rules. Using an incomplete factorial design, we analysed the environmental and parental components of variation in predator-induced life history (age and size at metamorphosis), morphology (tail depth) and behavior of Italian treefrog tadpoles (<em>Hyla intermedia</em>). Results provided strong evidence for an environmental effect on all three sets of characters. Tadpoles raised with caged predators (dragonfly larvae, gen. <em>Aeshna</em>) metamorphosed earlier (but at a similar body size) and developed deeper tails than their fullsib brothers raised without predators. When tested in experimental arenas either with or without a caged predator, all tadpoles, independent of their experience, flexibly changed their activity and position, depending on whether the cage was empty or contained the predator. Tadpoles of the two experimental groups, however, followed different flexible rules: those raised with predators were always less active than their predator-naive brothers and differences slightly increased in the presence of predators. Besides this strong environmental component of phenotypic variation, results provided evidence also for parental and parental-by-environment effects, which were strong on life-history and morphology, but weak on behavior. Interestingly, additive parental effects were explained only by dams. This supports the hypothesis that phenotypic plasticity might depend on epigenetic factors and that it might be the expression of condition-dependent mechanisms.
description: submitted to "Behavioral ecology and sociobiology"
DOI: 10.25405/data.ncl.14753622.v1
title: UK Spinal Muscular Atrophy (SMA) Patient Registry

description: The UK SMA Patient Registry (https://www.treat-nmd.org.uk/registry/) is a joint venture between the John Walton Muscular Dystrophy Research Centre at Newcastle University and the patient group SMA UK (formerly known as the Jennifer Trust, then SMA Support UK). SMA UK is a UK national charity dedicated to supporting people affected by SMA and investing in essential research into causes, treatments and eventually a cure for the condition. The UK SMA Patient Registry is affiliated with the TREAT-NMD Alliance which is an organisation experienced in the design and implementation of rare disease registries.<br> The purpose of the UK SMA Patient Registry is to register SMA patients from the UK and Ireland so that they may be considered for relevant clinical trials, receive the most up-to-date information regarding standards of care for their disease and help provide the research community with an understanding of SMA prevalence. Anonymised data from patients who register in the UK SMA Patient Registry will also be shared with TREAT-NMD as part of its global network of national SMA registries.<br> The registry dataset includes patient reported clinical and genetic confirmation of SMA, symptoms relating to muscle weakness, motor function, medication use, family history and ethnicity. This includes the TREAT-NMD Expanded Core Dataset which includes relevant post-marketing surveillance data items too.<br> All patients with a confirmed SMA diagnosis (or pending diagnosis) are eligible for inclusion.<b></b>
DOI: 10.25405/data.ncl.14753622
title: UK Spinal Muscular Atrophy (SMA) Patient Registry

description: The UK SMA Patient Registry (https://www.treat-nmd.org.uk/registry/) is a joint venture between the John Walton Muscular Dystrophy Research Centre at Newcastle University and the patient group SMA UK (formerly known as the Jennifer Trust, then SMA Support UK). SMA UK is a UK national charity dedicated to supporting people affected by SMA and investing in essential research into causes, treatments and eventually a cure for the condition. The UK SMA Patient Registry is affiliated with the TREAT-NMD Alliance which is an organisation experienced in the design and implementation of rare disease registries.<br> The purpose of the UK SMA Patient Registry is to register SMA patients from the UK and Ireland so that they may be considered for relevant clinical trials, receive the most up-to-date information regarding standards of care for their disease and help provide the research community with an understanding of SMA prevalence. Anonymised data from patients who register in the UK SMA Patient Registry will also be shared with TREAT-NMD as part of its global network of national SMA registries.<br> The registry dataset includes patient reported clinical and genetic confirmation of SMA, symptoms relating to muscle weakness, motor function, medication use, family history and ethnicity. This includes the TREAT-NMD Expanded Core Dataset which includes relevant post-marketing surveillance data items too.<br> All patients with a confirmed SMA diagnosis (or pending diagnosis) are eligible for inclusion.<b></b>
DOI: 10.5258/soton/d1747
title: Data to Support Paper on Excited Rydberg States in TMD Heterostructures

description: This dataset contains reflectivity and resonance Raman spectroscopy data obtained on hBN encapsulated monolayers and heterostructures of MoSe2 and WSe2 at 4 K. This data underpins the paper with preliminary title: "Excited Rydberg States in TMD Heterostructures". For full details of the results and experimental conditions pleaser refer to the paper and associated supplementary information. The dataset is available under a CC-BY 4.0 licence
DOI: 10.6084/m9.figshare.14770191
title: Representação visual semântica das pesquisas desenvolvidas nos cursos de graduação e pós-graduação em Biblioteconomia e Ciência da Informação da UFRGS

description: A coleta de dados foi realizada por intermédio do <i>scraping</i> de conteúdo, utilizado como extensão no navegador Google Chrome para extrair dados de páginas <i>web</i> de forma intuitiva. O Web Scraper<sup><sup>[1]</sup></sup> foi utilizado para coletar dados disponíveis no repositório digital LUME, no período de 2002 a 2019. Os documentos de interesse foram os Trabalhos de Conclusão de Curso da Biblioteconomia da UFRGS; também foram coletadas as teses e dissertações do Programa de Pós-Graduação em Comunicação e Informação (PPGCOM) da UFRGS, cujos orientadores pertencem ao Departamento de Ciências da Informação (DCI). Vale ressaltar que a coleta foi realizada antes do Programa de Pós-Graduação em Ciência da Informação (PPGCIN) da UFRGS contar com dissertações na plataforma. Após a coleta, o Web Scraper<i> </i>gerou uma planilha em formato .csv com os dados organizados em sete colunas, referentes aos seguintes elementos: URL, Handle, Título, Autor, Orientador, Ano e Assunto. Para a limpeza dos dados, utilizamos a função “Dividir texto em colunas” do Google Sheets, com o separador “[”, pois cada palavra-chave estrangeira iniciava com a abreviação do idioma entre colchetes. Por fim, optou-se pela exclusão das palavras-chave estrangeiras, pois não apresentavam controle de vocabulário, diferentemente dos termos em português. Com base nesses dados, identificamos áreas temáticas por meio do agrupamento das palavras-chave e as relacionamos por via do <i>software </i>VOSviewer<sup><sup>[2]</sup></sup>. A elaboração do agrupamento e dos relacionamentos foi possível por intermédio do utilitário bibliométrico disponível na Base de Dados Referencial de Artigos de Periódicos em Ciência da Informação (Brapci), desenvolvida por Bufrem, Costa, Gabriel Junior e Pinto (2010), que possibilitou converter arquivos texto (.TXT) para o Pajek (.NET), formato necessário para o uso de <i>softwares</i> de visualização de redes. Por fim, utilizamos o programa Tableau Public<i><sup><b><sup>[3]</sup></b></sup></i> para quantificar os assuntos com maior incidência à representação gráfica, aliando as ferramentas disponíveis aos conceitos de como aperfeiçoar a visualização da informação. <br> <sup><sup>[1]</sup></sup> A extensão para navegador<i> </i>Web Scraper possibilita elaborar estratégias para extrair dados de <i>sites</i> e está disponível em https://webscraper.io/. O seu uso é intuitivo e não envolve programação. <sup><sup>[2]</sup></sup> O VOSviewer é um programa utilizado para visualizar redes de dados bibliométricos coocorrência de termos, entre outros. A ferramenta está disponível em https://www.vosviewer.com/. <sup><sup>[3]</sup></sup> O Tableau Public é uma plataforma <i>web</i> gratuita voltada à elaboração de visualizações de dados e está disponível em https://public.tableau.com/pt-br/s/about. Optamos pela ferramenta, pois oferece resultados esteticamente satisfatórios e o uso é intuitivo.
DOI: 10.6084/m9.figshare.14770191.v1
title: Representação visual semântica das pesquisas desenvolvidas nos cursos de graduação e pós-graduação em Biblioteconomia e Ciência da Informação da UFRGS

description: A coleta de dados foi realizada por intermédio do <i>scraping</i> de conteúdo, utilizado como extensão no navegador Google Chrome para extrair dados de páginas <i>web</i> de forma intuitiva. O Web Scraper<sup><sup>[1]</sup></sup> foi utilizado para coletar dados disponíveis no repositório digital LUME, no período de 2002 a 2019. Os documentos de interesse foram os Trabalhos de Conclusão de Curso da Biblioteconomia da UFRGS; também foram coletadas as teses e dissertações do Programa de Pós-Graduação em Comunicação e Informação (PPGCOM) da UFRGS, cujos orientadores pertencem ao Departamento de Ciências da Informação (DCI). Vale ressaltar que a coleta foi realizada antes do Programa de Pós-Graduação em Ciência da Informação (PPGCIN) da UFRGS contar com dissertações na plataforma. Após a coleta, o Web Scraper<i> </i>gerou uma planilha em formato .csv com os dados organizados em sete colunas, referentes aos seguintes elementos: URL, Handle, Título, Autor, Orientador, Ano e Assunto. Para a limpeza dos dados, utilizamos a função “Dividir texto em colunas” do Google Sheets, com o separador “[”, pois cada palavra-chave estrangeira iniciava com a abreviação do idioma entre colchetes. Por fim, optou-se pela exclusão das palavras-chave estrangeiras, pois não apresentavam controle de vocabulário, diferentemente dos termos em português. Com base nesses dados, identificamos áreas temáticas por meio do agrupamento das palavras-chave e as relacionamos por via do <i>software </i>VOSviewer<sup><sup>[2]</sup></sup>. A elaboração do agrupamento e dos relacionamentos foi possível por intermédio do utilitário bibliométrico disponível na Base de Dados Referencial de Artigos de Periódicos em Ciência da Informação (Brapci), desenvolvida por Bufrem, Costa, Gabriel Junior e Pinto (2010), que possibilitou converter arquivos texto (.TXT) para o Pajek (.NET), formato necessário para o uso de <i>softwares</i> de visualização de redes. Por fim, utilizamos o programa Tableau Public<i><sup><b><sup>[3]</sup></b></sup></i> para quantificar os assuntos com maior incidência à representação gráfica, aliando as ferramentas disponíveis aos conceitos de como aperfeiçoar a visualização da informação. <br> <sup><sup>[1]</sup></sup> A extensão para navegador<i> </i>Web Scraper possibilita elaborar estratégias para extrair dados de <i>sites</i> e está disponível em https://webscraper.io/. O seu uso é intuitivo e não envolve programação. <sup><sup>[2]</sup></sup> O VOSviewer é um programa utilizado para visualizar redes de dados bibliométricos coocorrência de termos, entre outros. A ferramenta está disponível em https://www.vosviewer.com/. <sup><sup>[3]</sup></sup> O Tableau Public é uma plataforma <i>web</i> gratuita voltada à elaboração de visualizações de dados e está disponível em https://public.tableau.com/pt-br/s/about. Optamos pela ferramenta, pois oferece resultados esteticamente satisfatórios e o uso é intuitivo.
DOI: 10.15468/ygvf34
title: Novel alpine algae from New Zealand: Chlorophyta

description: This dataset contains the digitized treatments in Plazi based on the original journal article Novis, Phil M., Visnovsky, Gabriel (2012): Novel alpine algae from New Zealand: Chlorophyta. Phytotaxa 39: 1-30, DOI: 10.11646/phytotaxa.39.1.1, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.39.1.1
DOI: 10.5066/p9kiu1oo
title: Aeromagnetic data and design files related to testing of new drone-based magnetometer configurations and magnetic compensation software; 2020 Santa Cruz, CA, and Surprise Valley, CA

description: This dataset contains magnetometry data and design files related to testing of new drone-based magnetometer configurations and magnetic compensation software. Data were collected in Santa Cruz (CA) in September 2020 to compare two magnetometer systems that are flown with Unmanned Aerial Systems (UAS). Each system was flown using different suspension designs. To compare the systems and to characterize noise levels of the systems, calibration patterns and dense grid surveys were flown with each configuration. This dataset was further used to test magnetic compensation software. The overall aim of this study was to compare the variability of different UAS-based magnetometry systems that can be used for geophysical surveying. The dataset includes comma-separated values (CSV) formatted files, CAD design files (STL), as well as RAW data files downloaded directly from the magnetometers, that can be converted to CSV format utilizing software tools provided by the magnetometer manufacturers.
DOI: 10.6084/m9.figshare.14766102.v6
title: antspyt1w helper data

description: downloadable cloud data for testing and processing
DOI: 10.5258/soton/d1198
title: Dataset for: Quantifying intracortical bone microstructure: a critical appraisal of 2D and 3D approaches for assessing vascular canals and osteocyte lacunae

description: Data to support article "Quantifying intracortical bone microstructure: a critical appraisal of 2D and 3D approaches for assessing vascular canals and osteocyte lacunae". Journal of Anatomy. Oct 2020. doi: 10.1111/joa.13325
DOI: 10.6084/m9.figshare.14737569
title: Vigilance state and spectral data

description: This folder contains sample data to re-create the key results, presented in: <br>Krone, LB et al. A role for the cortex in sleep-wake regulation. Nature Neuroscience (2021)<br>The files are called 'VSspec' for 'vigilance states and spectra'. - The Matlab files are systematically labelled with the name of the animal, the recording date, and the recorded channel. - For each animal two files exist, one for the baseline day and one for the sleep deprivation day, on which the animal was kept awake for the first 6 hours of the recording. - Each file contains the vigilance state output and spectra after sleep scoring in SleepSign for each individual 4-epoch of a 24-hour recording. <br>- The variables are: -- w: wake epochs (vector)-- w1: wake epochs with EEG artefacts (vector)-- nr: NREM sleep epochs (vector)-- nr2: NREM sleep epochs with EEG artefacts (vector)-- r: REM sleep epochs (vector)-- r3: REM sleep epochs with EEG artefacts (vector)-- mt: movement epochs (vector)-- ma: movement epochs with EEG artefacts (vector)-- bastend: start and end epoch of each brief awakening (2-column matrix)-- spectr: EEG spectra between 0 and 30 Hz for each epoch (21600x121 matrix)<br><br><br>
DOI: 10.5517/ccdc.csd.cc24jyqc
title: CCDC 1982503: Experimental Crystal Structure Determination

description: Related Article: Li-Xin You, Sen-Yue Cao, Yang Guo, Shu-Ju Wang, Gang Xiong, Ileana Dragutan, Valerian Dragutan, Fu Ding, Ya-Guang Sun|2021|Inorg.Chim.Acta|525|120441|doi:10.1016/j.ica.2021.120441
DOI: 10.5517/ccdc.csd.cc24jz0p
title: CCDC 1982512: Experimental Crystal Structure Determination

description: Related Article: Li-Xin You, Sen-Yue Cao, Yang Guo, Shu-Ju Wang, Gang Xiong, Ileana Dragutan, Valerian Dragutan, Fu Ding, Ya-Guang Sun|2021|Inorg.Chim.Acta|525|120441|doi:10.1016/j.ica.2021.120441
DOI: 10.5517/ccdc.csd.cc24jz1q
title: CCDC 1982513: Experimental Crystal Structure Determination

description: Related Article: Li-Xin You, Sen-Yue Cao, Yang Guo, Shu-Ju Wang, Gang Xiong, Ileana Dragutan, Valerian Dragutan, Fu Ding, Ya-Guang Sun|2021|Inorg.Chim.Acta|525|120441|doi:10.1016/j.ica.2021.120441
DOI: 10.5517/ccdc.csd.cc24jz2r
title: CCDC 1982514: Experimental Crystal Structure Determination

description: Related Article: Li-Xin You, Sen-Yue Cao, Yang Guo, Shu-Ju Wang, Gang Xiong, Ileana Dragutan, Valerian Dragutan, Fu Ding, Ya-Guang Sun|2021|Inorg.Chim.Acta|525|120441|doi:10.1016/j.ica.2021.120441
DOI: 10.5517/ccdc.csd.cc24jz3s
title: CCDC 1982515: Experimental Crystal Structure Determination

description: Related Article: Li-Xin You, Sen-Yue Cao, Yang Guo, Shu-Ju Wang, Gang Xiong, Ileana Dragutan, Valerian Dragutan, Fu Ding, Ya-Guang Sun|2021|Inorg.Chim.Acta|525|120441|doi:10.1016/j.ica.2021.120441
DOI: 10.5517/ccdc.csd.cc272tgm
title: CCDC 2058290: Experimental Crystal Structure Determination

description: Related Article: Gonzalo Campillo-Alvarado, Rachel J. Liu, Daniel W. Davies, Ying Diao|2021|Cryst.Growth Des.|21|3143|doi:10.1021/acs.cgd.1c00114
DOI: 10.15468/zm4hnk
title: Staurophora brantii, a new diatom (Bacillariophyta, Anomoeoneidaceae) from the northwestern Great Plains, USA

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bahls, Loren (2012): Staurophora brantii, a new diatom (Bacillariophyta, Anomoeoneidaceae) from the northwestern Great Plains, USA. Phytotaxa 39: 31-37, DOI: 10.11646/phytotaxa.39.1.2, URL: http://biotaxa.org/Phytotaxa/article/view/phytotaxa.39.1.2
DOI: 10.6084/m9.figshare.14770194
title: OpenFOAM simulations of the JBC Benchmark Case

description: Simulation data and conference paper for OpenFOAM simulations of the JBC Benchmark case.
DOI: 10.6084/m9.figshare.14770194.v1
title: OpenFOAM simulations of the JBC Benchmark Case

description: Simulation data and conference paper for OpenFOAM simulations of the JBC Benchmark case.
DOI: 10.6084/m9.figshare.14770095
title: Lianas significantly reduce tree performance and biomass accumulation across tropical forests: a global meta-analysis

description: Data to conduct three-level mixed effect meta-analytic models to determine the direction and magnitud of the effect of lianas on tree growth, growth, biomass accumulation, reproduction, mortality, leaf water potential, sap flow velocity in ecological, silvicultural and logging studies. <br>ID = unique number per published liana removal experiment; Year = year of publication; Author = author/s that published liana removal experiment; Category = Ecological, Silvicultural, Logging; GrowthRed = studies that assessed growth reduction due to lianas; Mortality = studies that assessed increased in mortality due to lianas; TreeDiversity = studies that assessed changes in tree diversity due to lianas; Reproduction = studies that assessed reduction in reproduction due to lianas; BiomassAcum = studies that assessed changes in biomass accumulation due to lianas; Opennes = studies that assessed changes in canopy openness due to liana removal; Recruitment = studies that assessed changes in recruitment due to lianas; LeafWaterPotential = studies that assessed changes in leaf water potential potential after liana removal; SapFlow = studies that assessed changes in sap flow after liana removal; LAI-PAI = studies that assessed changes in leaf area index or plant area index due to liana removal; TimeEffect = number of days from liana removal to reported effect; Country = country where liana removal experiment was performed; Holdridge = Life Zone according to Holdrigde 1964; MAP = mean annual precipitation; Elevation = in meters above sea level; MeanExp1 = mean effect of manipulation where lianas were removed; MeanControl1 = mean effect of the control where lianas were not removed; STDEVPool = pooled standard deviation from manipulation and control; SDExp = standard deviation from manipulation where lianas were removed; SDCont = standard deviation from control where lianas were not removed; NExp = sample size for liana removal treatment; NCont = sample size for control treatment; Ntotal = sum of sample sizes from both treatments; TimeSteps = number of times removals and controls experiment were measured through time.
DOI: 10.5281/zenodo.4926569
title: NatalieBiderman/Counterfactual_value_learning: v1.0

description: This is the first release of the repository. The repository includes experimental data and analysis codes to reproduce all results reported in Biderman and Shohamy (2021), Nature Communications.
DOI: 10.5281/zenodo.4926568
title: NatalieBiderman/Counterfactual_value_learning: v1.0

description: This is the first release of the repository. The repository includes experimental data and analysis codes to reproduce all results reported in Biderman and Shohamy (2021), Nature Communications.