cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.60712/si-id362520.1
title: StrainInfo SI-ID 362520.1

description: StrainInfo dataset 362520 about a strain of Vibrio marisflavi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id362523.1
title: StrainInfo SI-ID 362523.1

description: StrainInfo dataset 362523 about a strain of Marisediminitalea aggregata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id363325.1
title: StrainInfo SI-ID 363325.1

description: StrainInfo dataset 363325 about a strain of Ralstonia solanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id363326.1
title: StrainInfo SI-ID 363326.1

description: StrainInfo dataset 363326 about a strain of Ralstonia solanacearum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.dwwf5j
title: Occurrence Download

description: A dataset containing 157729 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Utricularia alpina Jacq., Utricularia amethystina Salzm. ex A.St.-Hil. & Girard, Utricularia asplundii P.Taylor, Utricularia aurea Lour., Utricularia ×australis R.Br., Utricularia biloba R.Br., Utricularia cucullata A.St.-Hil. & Girard, Utricularia endresii Rchb.fil., Utricularia flaccida A.DC., Utricularia geminiloba Benj., Utricularia geminiscapa Benj., Utricularia gibba L., Utricularia huntii P.Taylor, Utricularia inflata Walter, Utricularia intermedia Hayne, Utricularia leptoplectra F.Muell., Utricularia longifolia Gardner, Utricularia macrorhiza Leconte, Utricularia minor L., Utricularia myriocista A.St.-Hil. & Girard, Utricularia nelumbifolia Gardner, Utricularia neottioides A.St.-Hil. & Girard, Utricularia nephrophylla Benj., Utricularia olivacea C.Wright ex Griseb., Utricularia oliveriana Steyerm., Utricularia praelonga A.St.-Hil. & Girard, Utricularia reniformis A.St.-Hil., Utricularia resupinata B.D.Greene ex Hitchc., Utricularia subulata L., Utricularia tricolor A.St.-Hil., Utricularia triloba Benj., Utricularia vulgaris L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 }
 ]
}

 The dataset includes 157729 records from 1192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086012-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14833563
title: Update: Changes in soil organic matter composition and quality in Amazonian mangrove forests converted to shrimp farms

description: Updated version of the previous document, with corrected Rock-Eval data identifiers
DOI: 10.5281/zenodo.16420149
title: Update: Changes in soil organic matter composition and quality in Amazonian mangrove forests converted to shrimp farms

description: Updated version of the previous document, with corrected Rock-Eval data identifiers
DOI: 10.5281/zenodo.16300438
title: RoboATAC BigWigs KLF1

description: This is the bigwigs for RoboATAC (Liu et al, bioRxiv 2025b). Each file contains 3 bigwigs: [sample].counts_scores.bw: contribution scores in consensus peaks
[sample]_chrombpnet_nobias.bw: Tn5 bias-corrected accessibility predicted by ChromBPNet
[sample]_data_unstranded.bw: experimentally observed accessibility
DOI: 10.5281/zenodo.16416592
title: RoboATAC BigWigs KLF1

description: This is the bigwigs for RoboATAC (Liu et al, bioRxiv 2025b). Each file contains 3 bigwigs: [sample].counts_scores.bw: contribution scores in consensus peaks
[sample]_chrombpnet_nobias.bw: Tn5 bias-corrected accessibility predicted by ChromBPNet
[sample]_data_unstranded.bw: experimentally observed accessibility
DOI: 10.15468/dl.xay7az
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ophiocordyceps neonutans"
 ]
}

 The dataset includes 117 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045288-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gh5bn7
title: Occurrence Download

description: A dataset containing 58549 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Numenius arquata",
 "MediaType is Image"
 ]
}

 The dataset includes 58549 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045246-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yf4tz
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Brachymystax tumensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045289-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6phuxe
title: Occurrence Download

description: A dataset containing 4598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenanthe hispanica",
 "MediaType is Image"
 ]
}

 The dataset includes 4598 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045290-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.85eyvp
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ophiocordyceps asiana"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045292-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.725nfr
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ophiocordyceps tessaratomidarum"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045293-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q2meav
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphophorus maculatus",
 "Country is Canada",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045294-250717081556266/datasets/export for details.
DOI: 10.5281/zenodo.16419505
title: Amplification of spontaneous emission from doubly excited He atoms

description: Amplification of spontaneous emission from doubly excited Heatoms 

Description of the data 

The dataset contains the data needed to reproduce the plots, presented in the article: Amplification of spontaneous emission from doublyexcited He atoms accepted for publication to the Physical Review Letters journal. The reference DOI is: https://doi.org/10.1103/mg5s-xvct Raw experimental data, recorded on the EIS-TIMEX beamline of the Fermi FEL in october 2023, will become available in october 2026 under thestandard CC-BY-SA-4.0 licence, as per the Elettra scientific data policy. It will be available on the Open access portal on the Elettra website underthe name 20224028. Raw theoretical data is available, upon request to the authors. It cannot be published in this repository, because of it’s size, which is more than 60 GB of hdf5 files. 

Organization of the data 

The data is compressed inside a single plot_data.zip file. When extracted 30 text files are produced, each containing one or more curves or datapoints. The contents of the files can be understood from the file names. Data inside the files is separated into columns with whitespacecharacters. On the top of each file is a short header about each column meaning and units of the data. More information can be found in the article.
DOI: 10.5281/zenodo.16419504
title: Amplification of spontaneous emission from doubly excited He atoms

description: Amplification of spontaneous emission from doubly excited Heatoms 

Description of the data 

The dataset contains the data needed to reproduce the plots, presented in the article: Amplification of spontaneous emission from doublyexcited He atoms accepted for publication to the Physical Review Letters journal. The reference DOI is: https://doi.org/10.1103/mg5s-xvct Raw experimental data, recorded on the EIS-TIMEX beamline of the Fermi FEL in october 2023, will become available in october 2026 under thestandard CC-BY-SA-4.0 licence, as per the Elettra scientific data policy. It will be available on the Open access portal on the Elettra website underthe name 20224028. Raw theoretical data is available, upon request to the authors. It cannot be published in this repository, because of it’s size, which is more than 60 GB of hdf5 files. 

Organization of the data 

The data is compressed inside a single plot_data.zip file. When extracted 30 text files are produced, each containing one or more curves or datapoints. The contents of the files can be understood from the file names. Data inside the files is separated into columns with whitespacecharacters. On the top of each file is a short header about each column meaning and units of the data. More information can be found in the article.
DOI: 10.5281/zenodo.16420214
title: Intensivkapazitäten und COVID-19-Intensivbettenbelegung in Deutschland

description: Das Intensivregister (www.intensivregister.de) ist eine digitale Plattform zur Echtzeiterfassung von intensivmedizinischen Behandlungs- und Bettenkapazitäten sowie den Fallzahlen intensivmedizinisch behandelter COVID-19-Patient:innen der etwa 1.300 Akut-Krankenhäuser Deutschlands. Bis 12 Uhr ist die tägliche Meldung laut Verordnung für die Krankenhäuser verpflichtend. Darüber hinaus kann beliebig oft gemeldet werden, sodass Veränderungen in den Kapazitäten aktuell berichtet werden können.
Damit ermöglicht das Intensivregister in der Pandemie sowie darüber hinaus, Engpässe in der intensivmedizinischen Versorgung im regionalen und zeitlichen Vergleich zu erkennen. Es schafft somit eine wertvolle Grundlage zur Reaktion und zur datengestützten Handlungssteuerung in Echtzeit. Zur Aufrechterhaltung der Krankenhausversorgung bietet das DIVI-Intensivregister demnach ein Portal zur Suche freier Intensivbetten und zur Kontaktaufnahme zwischen Fachkolleg*innen, um die gegenseitige Unterstützung bei Behandlungsfragen im intensivmedizinischen Kontext zu erleichtern. Ebenso liefert es eine maßgebliche Informationsgrundlage für staatliche Steuerungs- und Planungsmaßnahmen sowie für die lokale und überregionale Steuerung und Koordinierung der Bettenbelegung.
DOI: 10.15468/dl.retkrw
title: Occurrence Download

description: A dataset containing 96979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nycticorax nycticorax",
 "MediaType is Image"
 ]
}

 The dataset includes 96979 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045263-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qdb8et
title: Occurrence Download

description: A dataset containing 3793 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Impatiens glandulifera",
 "Country is Slovenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3793 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045295-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vj3u5
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xiphophorus maculatus",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045298-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.44ev2m
title: Occurrence Download

description: A dataset containing 301 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry MULTIPOLYGON(((-14.43658 26.09134,58.52499 26.09134,58.52499 47.33988,-14.43658 47.33988,-14.43658 26.09134)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platanus orientalis"
 ]
}

 The dataset includes 301 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045296-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2px4a4
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spartina densiflora",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045297-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncrcpr
title: Occurrence Download

description: A dataset containing 34134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Impatiens glandulifera",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34134 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045300-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2wrzgr
title: Occurrence Download

description: A dataset containing 161 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bassia scoparia",
 "Country is Switzerland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 161 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045299-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9rg52d
title: Occurrence Download

description: A dataset containing 2717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry MULTIPOLYGON(((-14.43658 26.09134,58.52499 26.09134,58.52499 47.33988,-14.43658 47.33988,-14.43658 26.09134)))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Populus alba, Populus canescens, Populus nigra, Populus pruinosa, Populus tremula)"
 ]
}

 The dataset includes 2717 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045301-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n2zpgw
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Nannocharax schoutedeni)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045302-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evqtth
title: Occurrence Download

description: A dataset containing 533 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nyctalus leisleri",
 "MediaType is Image"
 ]
}

 The dataset includes 533 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045303-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14893021
title: Driving Soils to Change: Tyre Wear Particles Modulate Microbial-Mediated Soil Functions and Performance of Vegetable Crops

description: This data set contains data of plant, soil, and soil microorganisms in response to varying levels of tyre wear particles.

the data columns:



id: unique pot identification number

crop: the crop grown

tp_cont: the tire particle concentration in percent (weight/weight)

project: the internal project name

pH: the soil pH

shoot_fresh_netto_g: the net shoot fresh weight in gramm

shoot_dry_netto_g: the net shoot dry weight in gramm

root_fresh_netto_g: the net root fresh weight in gramm

root_dry_netto_g: the net root dry weight in gramm

soil_water: soil water content at harvest in percent

soil_dry_matter: the soil dry matter in percent at harvest

tp: tire particle conentration

N_percent: shoot nitrogen concentrations in percent at harvest

C_percent: shoot carbon concentrations in percent at harvest

S_percent: shoot sulphur concentrations in percent at harvest

Ca_µg_g: shoot Ca concentrations in µg/g sample

K_µg_g: shoot K concentrations in µg/g sample

Na_µg_g: shoot Na concentrations in µg/g sample

P_µg_g: shoot P concentrations in µg/g sample

Mn_µg_g: shoot Mn concentrations in µg/g sample

Cu_µg_g: shoot Cu concentrations in µg/g sample

Zn_µg_g: shoot Zn concentrations in µg/g sample

Rb_µg_g: shoot Rb concentrations in µg/g sample

Sr_µg_g: shoot Sr concentrations in µg/g sample

CN: C/N ratio in shoots at harvest

BG_nnmol_gDW_h: Activity of β-1,4-glucosidase in nmol/g DW*h

CB_nnmol_gDW_h: Activity of β-D-cellobiosidase in nmol/g DW*h

XYL_nnmol_gDW_h: Activity of β-xylosidase in nmol/g DW*h

AG_nnmol_gDW_h: Activity of 4-Methylumbelliferyl α-D-glucopyranosidase in nmol/g DW*h

NAG_nnmol_gDW_h: Activity of β-1,4-N-acetylglucosaminidase in nmol/g DW*h

LAP_nnmol_gDW_h: Activity of leucine aminopeptidase in nmol/g DW*h

PHOS_nnmol_gDW_h: Activity of alkaline phosphatase in nmol/g DW*h

microbial_biomass: microbial biomass carbon assessed with the MicroResp test assay

basal_resp: microbial respiration upon addtion of water

qCO2: microbial metabolic quotient

KGA: microbial respiration upon addtion of Alpha-ketoglutaric acid

OA: microbial respiration upon addtion of Oxalic acid

XYL: microbial respiration upon addtion of Xylan

Glu: microbial respiration upon addtion of D-glucose

Nag: microbial respiration upon addtion of n-acetyl-glucosamine

Ala: microbial respiration upon addtion of L-alanine

ABA: microbial respiration upon addtion of Gamma-aminobutyric acid

MSIR: multiple substrate induced respiration

shannon: functional diversity index

root_colonization: root colonization rates (%) with arbuscular mycorrhiza fungi

soil_pH: soil pH
DOI: 10.5281/zenodo.14893022
title: Driving Soils to Change: Tyre Wear Particles Modulate Microbial-Mediated Soil Functions and Performance of Vegetable Crops

description: This data set contains data of plant, soil, and soil microorganisms in response to varying levels of tyre wear particles.

the data columns:



id: unique pot identification number

crop: the crop grown

tp_cont: the tire particle concentration in percent (weight/weight)

project: the internal project name

pH: the soil pH

shoot_fresh_netto_g: the net shoot fresh weight in gramm

shoot_dry_netto_g: the net shoot dry weight in gramm

root_fresh_netto_g: the net root fresh weight in gramm

root_dry_netto_g: the net root dry weight in gramm

soil_water: soil water content at harvest in percent

soil_dry_matter: the soil dry matter in percent at harvest

tp: tire particle conentration

N_percent: shoot nitrogen concentrations in percent at harvest

C_percent: shoot carbon concentrations in percent at harvest

S_percent: shoot sulphur concentrations in percent at harvest

Ca_µg_g: shoot Ca concentrations in µg/g sample

K_µg_g: shoot K concentrations in µg/g sample

Na_µg_g: shoot Na concentrations in µg/g sample

P_µg_g: shoot P concentrations in µg/g sample

Mn_µg_g: shoot Mn concentrations in µg/g sample

Cu_µg_g: shoot Cu concentrations in µg/g sample

Zn_µg_g: shoot Zn concentrations in µg/g sample

Rb_µg_g: shoot Rb concentrations in µg/g sample

Sr_µg_g: shoot Sr concentrations in µg/g sample

CN: C/N ratio in shoots at harvest

BG_nnmol_gDW_h: Activity of β-1,4-glucosidase in nmol/g DW*h

CB_nnmol_gDW_h: Activity of β-D-cellobiosidase in nmol/g DW*h

XYL_nnmol_gDW_h: Activity of β-xylosidase in nmol/g DW*h

AG_nnmol_gDW_h: Activity of 4-Methylumbelliferyl α-D-glucopyranosidase in nmol/g DW*h

NAG_nnmol_gDW_h: Activity of β-1,4-N-acetylglucosaminidase in nmol/g DW*h

LAP_nnmol_gDW_h: Activity of leucine aminopeptidase in nmol/g DW*h

PHOS_nnmol_gDW_h: Activity of alkaline phosphatase in nmol/g DW*h

microbial_biomass: microbial biomass carbon assessed with the MicroResp test assay

basal_resp: microbial respiration upon addtion of water

qCO2: microbial metabolic quotient

KGA: microbial respiration upon addtion of Alpha-ketoglutaric acid

OA: microbial respiration upon addtion of Oxalic acid

XYL: microbial respiration upon addtion of Xylan

Glu: microbial respiration upon addtion of D-glucose

Nag: microbial respiration upon addtion of n-acetyl-glucosamine

Ala: microbial respiration upon addtion of L-alanine

ABA: microbial respiration upon addtion of Gamma-aminobutyric acid

MSIR: multiple substrate induced respiration

shannon: functional diversity index

root_colonization: root colonization rates (%) with arbuscular mycorrhiza fungi

soil_pH: soil pH
DOI: 10.15468/dl.5vj2m7
title: Occurrence Download

description: A dataset containing 2663 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oenanthe deserti",
 "MediaType is Image"
 ]
}

 The dataset includes 2663 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045304-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.