cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.21227/9grc-xj64
title: SynthRAD2023 Grand Challenge

description: Medical imaging has become increasingly important in the diagnosis and treatment of oncological patients, particularly in radiotherapy. Traditionally, X-ray-based imaging is widely adopted in RT for patient positioning and monitoring before, during, or after the dose delivery.Computed tomography (CT) is considered the primary imaging modality in RT, providing accurate and high-resolution patient geometry and enabling direct electron density conversion needed for dose calculations [Chernak et al., 1975]. Also, cone-beam computed tomography (CBCT) plays a vital role in image-guided adaptive radiation therapy (IGART) for photon and proton therapy. However, due to the severe scatter noise and truncated projections, CBCT is affected by artifacts, e.g. as shading, streaking, and cupping that makes it unsuitable for accurate dose calculations [Ramella et al., 2017]. Image synthesis has been proposed to improve the quality of CBCT to the CT level, producing the so-called “synthetic CT” (sCT) [Kida et al., 2018]. The conversion of CBCT-to-CT would allow accurate dose computation, enabling adaptive CBCT-based RT and improving the quality of IGART provided to the patients.In the last decades, magnetic resonance imaging (MRI) has also proved its added value for tumors and organs-at-risk delineation thanks to its superb soft-tissue contrast . MRI can be acquired to simulate the treatment planning or to match patient positioning to the planned one and monitor changes before, during, or after the dose delivery [Lagendijk et al., 2004].To benefit from the complementary advantages offered by different imaging modalities, MRI is generally registered to CT. Such a workflow requires obtaining a CT, increasing workload, and introducing additional radiation to the patient. Recently, MRI-only based RT has been proposed to simplify and speed up the workflow, decreasing patients' exposure to ionizing radiation, which is particularly relevant for repeated simulations or fragile populations like children. MRI-only RT may reduce overall treatment costs and workload, and eliminate residual registration errors when using both imaging modalities. Additionally, the development of MRI-only techniques can be beneficial for MRI-guided RT [Edmund and Nyholm, 2017].The main obstacle in introducing MRI-only RT is the lack of tissue attenuation information required for accurate dose calculations. Many methods have been proposed to convert MR to CT-equivalent images, obtaining synthetic CT (sCT) for treatment planning and dose calculation. In recent years, the derivation of sCT from MRI or CBCT has increased interest based on artificial intelligence algorithms such as machine learning or deep learning. However, no public data or challenges have been designed to provide ground truth for this task.A recent review of deep learning-based sCT generation advocated for public challenges to provide data and evaluation metrics to compare different approaches openly.
DOI: 10.15468/dl.9f9mxj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyposoter lymantriae Cushman, 1927",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018608-250310093411724/datasets/export for details.
DOI: 10.15468/dl.9b6xqc
title: Occurrence Download

description: A dataset containing 15391 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tayassu pecari (Link, 1795)"
 ]
}

 The dataset includes 15391 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018610-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kz2qh
title: Occurrence Download

description: A dataset containing 1625 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Coelopa frigida (Fabricius, 1805), Coelopa pilipes Haliday, 1838)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1625 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018611-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d4awyr
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ptilopachus nahani (A.J.C.Dubois, 1905)"
 ]
}

 The dataset includes 468 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018612-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tgbbwt
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-34.72768 -24.67004,56.70603 -24.67004,56.70603 11.93556,-34.72768 11.93556,-34.72768 -24.67004))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Picathartes oreas Reichenow, 1899"
 ]
}

 The dataset includes 140 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018613-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8bnhr
title: Occurrence Download

description: A dataset containing 235889 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "Continent is Europe",
 "Country is one of (Switzerland, France, Austria, Italy, Germany, Liechtenstein, Slovenia, Andorra)",
 "DatasetKey is one of (Swiss National Mammal Databank, Swiss National Mammal Databank: Larger Carnivores Monitoring Program (KORA), Inventaire des Mammifères de France - Atlas des ongulés et Lagomorphes de France (Métropole et outre-mer). 2000-2020., 2021_LPO PACA_5, Biodiversitätsdatenbank Nationalpark Kalkalpen, Données issues du portail Sigogne - Bourgogne-Franche-Comté - Observatoire LPO Franche-Comté des espèces (oiseaux, amphibiens, reptiles, mammifères sauf chauve-souris), Observations faune et flore du Parc national des Écrins, iNaturalist Research-grade Observations, Observation.org, Nature data from around the World, SILENE-FAUNE-PACA - Parc_National_des_Ecrins_2017_12_18)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 235889 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018606-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m4g3sk
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-34.72768 -24.67004,56.70603 -24.67004,56.70603 11.93556,-34.72768 11.93556,-34.72768 -24.67004))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Picathartes oreas Reichenow, 1899"
 ]
}

 The dataset's 1 records were derived from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018604-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a57eh7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Namibia",
 "OccurrenceStatus is Present",
 "TaxonKey is Curio sulcicalyx (N.E.Br.) P.V.Heath"
 ]
}

 The dataset includes 4 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018614-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaqsr3
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Kenya",
 "TaxonKey is Diceros bicornis (Linnaeus, 1758)",
 "Year 1000-2000"
 ]
}

 The dataset includes 109 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018616-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vk2b57
title: Occurrence Download

description: A dataset listing the 437 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Zimbabwe",
 "OccurrenceStatus is Present",
 "TaxonKey is Squamata"
 ]
}

 The dataset's 437 records were derived from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018609-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c9evru
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aleochara villosa Mannerheim, 1830",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 231 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018617-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ewshh
title: Occurrence Download

description: A dataset containing 8269 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Culex pipiens Linnaeus, 1758",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 8269 records from 214 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018618-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3j4r8
title: Occurrence Download

description: A dataset containing 3148 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sclerocarya birrea (A.Rich.) Hochst.",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 3148 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018622-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15011481
title: Dataset of the paper "Gate electrode-induced nonreciprocal resistance in topological insulators"

description: Data supporting the manuscript: "Gate electrode-induced nonreciprocal resistance in topological insulators". All data is ordered according to the figures, presented in the manuscript.
DOI: 10.5281/zenodo.15011482
title: Dataset of the paper "Gate electrode-induced nonreciprocal resistance in topological insulators"

description: Data supporting the manuscript: "Gate electrode-induced nonreciprocal resistance in topological insulators". All data is ordered according to the figures, presented in the manuscript.
DOI: 10.15468/dl.m5eb9y
title: Occurrence Download

description: A dataset containing 6144 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hedychium coronarium J.Koenig"
 ]
}

 The dataset includes 6144 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018623-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfkzmh
title: Occurrence Download

description: A dataset containing 11975 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Plebejus argus (Linnaeus, 1758)",
 "Year 2016-2018"
 ]
}

 The dataset includes 11975 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018620-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15040084
title: Datasets for "Electronic interferometry with ultrashort plasmonic pulses"

description: __________________________________________________________

This repository contains the experimental data associated with the manuscript  

"Electronic interferometry with ultrashort plasmonic pulses"  

by S. Ouacel et al.  

See arXiv:2408.13025 for more details.  

__________________________________________________________

 

_______________________________________

Folder organization

_______________________________________

 

Each figure in the manuscript that contains experimental data has an assigned folder.  

In each folder, you will find:  

 

- The figure in PDF format  

- The JSON data files corresponding to each panel of the figure  

 

The data is well-structured in JSON format, ensuring clarity and ease of use.  

Each JSON file contains the relevant variables associated with the corresponding figure panel.  

 

Folder structure:  

- fig1/ → Figure 1 and associated data  

- fig2/ → Figure 2 and associated data  

- fig3/ → Figure 3 and associated data  

- fig4/ → Figure 4 and associated data  

 

For further informations, you can contact the first author.
DOI: 10.5281/zenodo.15040085
title: Datasets for "Electronic interferometry with ultrashort plasmonic pulses"

description: __________________________________________________________

This repository contains the experimental data associated with the manuscript  

"Electronic interferometry with ultrashort plasmonic pulses"  

by S. Ouacel et al.  

See arXiv:2408.13025 for more details.  

__________________________________________________________

 

_______________________________________

Folder organization

_______________________________________

 

Each figure in the manuscript that contains experimental data has an assigned folder.  

In each folder, you will find:  

 

- The figure in PDF format  

- The JSON data files corresponding to each panel of the figure  

 

The data is well-structured in JSON format, ensuring clarity and ease of use.  

Each JSON file contains the relevant variables associated with the corresponding figure panel.  

 

Folder structure:  

- fig1/ → Figure 1 and associated data  

- fig2/ → Figure 2 and associated data  

- fig3/ → Figure 3 and associated data  

- fig4/ → Figure 4 and associated data  

 

For further informations, you can contact the first author.
DOI: 10.15468/dl.84gqxb
title: Occurrence Download

description: A dataset containing 133084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence)",
 "Continent is Europe",
 "Country is one of (France, Switzerland, Austria, Germany, Slovenia, Liechtenstein, Andorra, Italy)",
 "DatasetKey is one of (Swiss National Mammal Databank, Inventaire des Mammifères de France - Atlas des ongulés et Lagomorphes de France (Métropole et outre-mer). 2000-2020., Swiss National Mammal Databank: Larger Carnivores Monitoring Program (KORA), Biodiversitätsdatenbank Nationalpark Kalkalpen, Camera-trapping: wild and domestic species occurrences in three Pyrenean pastures, 2021_LPO PACA_5, Données du Parc national des Cévennes - Inventaire et suivis d'espèces dans le Parc national des Cévennes, Diversité et répartition des mammifères non-volants d'Auvergne (Groupe Mammalogique d'Auvergne - LPO Auvergne) - Données de Mammifères collectées par le Groupe Mammalogique d’Auvergne et la Ligue pour la Protection des Oiseaux Auvergne., iNaturalist Research-grade Observations, Versement collectif Faune Occitanie 2020 amphibiens, reptiles, mammifères)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cervus elaphus Linnaeus, 1758",
 "Year 2000-2025"
 ]
}

 The dataset includes 133084 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018615-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010850
title: Evaluating the impact of Baloxavir on dynamics of influenza within-host infection and within-household transmission

description: The risk of a new pandemic (an infectious disease that spreads globally) caused by an influenza virus is as high as it has ever been, in particular in the context of the widespread presence of a particular influenza virus called H5N1. H5N1 is an avian influenza virus that can infect humans and cause severe illness and deaths in humans. In this context, it is important to prepare robust plans to respond to influenza pandemics. These plans need to consider non-pharmaceutical (e.g. social distancing measures, closure of specific places etc.) and pharmaceutical measures. Given their ability to reduce symptom severity as well as the transmission of the virus to other people, large scale use of antiviral drugs such as Baloxavir needs to be robustly assessed. Baloxavir works by preventing the release of newly formed virus from infected cells. This assessment requires a thorough evaluation of Baloxavir's impact on the dynamics of the progression of the influenza infection within the infected person (within-host infection) and transmission of the infection to others within a household (within-household transmission).

We aim to reanalyze data from the Centerstone study with sophisticated mathematical and statistical models to derive a more detailed understanding of the impact of Baloxavir, a new treatment with promising impact on transmission. Our approach will rely on “Bayesian data augmentation” methods that can address complex missing data problems (for example we do not know when, where and by whom individuals were infected). Compared to the original analysis, this will ensure that we better account for the multiple routes through which individuals might have been infected in the study. In addition, by combining models that describe the impact of the treatment on both within-host infection dynamics and on within-household transmission dynamics, we will obtain a fuller understanding of Baloxavir’s impact. This study builds on years of experience analyzing data from household transmission studies in the Mathematical Modelling of Infectious Disease Unit at Institut Pasteur. The study will complement the original analysis of the data by providing more thorough modelling of the impact of Baloxavir on within-host infection dynamics and within-household transmission dynamics.

Results of this study will inform mathematical models developed to plan the response to future influenza pandemic.
DOI: 10.15468/dl.vyrzvj
title: Occurrence Download

description: A dataset containing 409 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alphitobius laevigatus (Fabricius, 1781)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 409 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018625-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uegg4t
title: Occurrence Download

description: A dataset containing 627163 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence)",
 "Continent is Europe",
 "Country is one of (Switzerland, France, Germany, Italy, Austria, Andorra, Liechtenstein, Slovenia)",
 "DatasetKey is one of (Swiss National Mammal Databank, Inventaire des Mammifères de France - Atlas des ongulés et Lagomorphes de France (Métropole et outre-mer). 2000-2020., Swiss National Mammal Databank: Larger Carnivores Monitoring Program (KORA), NABU|naturgucker, Observation.org, Nature data from around the World, 2021_LPO PACA_5, iNaturalist Research-grade Observations, Données issues du portail Sigogne - Bourgogne-Franche-Comté - Observatoire LPO Franche-Comté des espèces (oiseaux, amphibiens, reptiles, mammifères sauf chauve-souris), Diversité et répartition des mammifères non-volants d'Auvergne (Groupe Mammalogique d'Auvergne - LPO Auvergne) - Données de Mammifères collectées par le Groupe Mammalogique d’Auvergne et la Ligue pour la Protection des Oiseaux Auvergne., Données issues du portail Sigogne - Bourgogne-Franche-Comté - Données du programme OFAB - Société d'Histoire Naturelle d'Autun)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)",
 "Year 2000-2025"
 ]
}

 The dataset includes 627163 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018619-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hyutch
title: Occurrence Download

description: A dataset containing 2003084 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)"
 ]
}

 The dataset includes 2003084 records from 4166 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018568-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive111026.20241212.9.2
title: Streptomyces sp.

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15156/bio/sh0102748.10fu
title: SH0102748.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.