cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7886606
title: A worldwide listing and biogeography of freshwater diatom genera: a phylogenetic perspective

description: A listing of the accepted freshwater diatom genera worldwide is presented, indicating the distribution of the genera by continent. Out of a total of 249 genera, 63 (25%) of those genera are endemic to a single continent. The continent with the largest number of endemic genera is Asia, hosting 35 endemic genera. While Asia is also the continent with the most reported genera, a regression analysis showed there is no relationship between the continental richness of genera and generic endemism. Disjunct genera, those found on two continents, represent distributions found in other groups of organisms such as in higher plants, including North America-Europe, North America–Asia and Southern Hemisphere disjunctions. There are certain lineages of freshwater diatoms where the endemic genera are restricted to specific continents: both thalassiosiroid and cymbelloid diatoms have endemics in Asia, while eunotioids have endemics in South America. Future research is suggested combining distributions over space and time related to phylogenetic relationships of diatoms.
DOI: 10.6084/m9.figshare.7886656.v1
title: Online Appendix - The Development and Validation of the Intellectual Virtue Scale.docx

description: Online supplemental material for the article on intellectual virtue
DOI: 10.6084/m9.figshare.7886600
title: Intellectual Virtue Scale Datasets

description: Raw data, cleaning instructions, and analyses associated with Article "The Intellectual Virtue Scale".<br>To reproduce the analysis in the main article, run <br>1 EFA_analysis.do,<br>2 CFA_analysis.do, and<br>3 CVS_analysis<br><br>in Stata
DOI: 10.6084/m9.figshare.7886606.v1
title: A worldwide listing and biogeography of freshwater diatom genera: a phylogenetic perspective

description: A listing of the accepted freshwater diatom genera worldwide is presented, indicating the distribution of the genera by continent. Out of a total of 249 genera, 63 (25%) of those genera are endemic to a single continent. The continent with the largest number of endemic genera is Asia, hosting 35 endemic genera. While Asia is also the continent with the most reported genera, a regression analysis showed there is no relationship between the continental richness of genera and generic endemism. Disjunct genera, those found on two continents, represent distributions found in other groups of organisms such as in higher plants, including North America-Europe, North America–Asia and Southern Hemisphere disjunctions. There are certain lineages of freshwater diatoms where the endemic genera are restricted to specific continents: both thalassiosiroid and cymbelloid diatoms have endemics in Asia, while eunotioids have endemics in South America. Future research is suggested combining distributions over space and time related to phylogenetic relationships of diatoms.
DOI: 10.6084/m9.figshare.7886567
title: Data_set_kalinski.xlsx

description: Dataset for the experiment on microbial load on nests and great tit nestlings.<br>
DOI: 10.6084/m9.figshare.7886579
title: Multi track recordings

description: Multi track files with synchronised audio from five separate recording devices. For location of the devices, see xls file.https://doi.org/10.1121/1.5092973<br>
DOI: 10.6084/m9.figshare.7886564
title: Assembly Results

description: This dataset contains fasta format files of the initial version and improved final version of draft genome assembly of Portunus trituberculatus.
DOI: 10.6084/m9.figshare.7886600.v1
title: Raw Data and Cleaning

description: Raw data, cleaning instructions, and analyses associated with Article "The Intellectual Virtue Scale".<br>To reproduce the analysis in the main article, run <br>1 EFA_analysis.do,<br>2 CFA_analysis.do, and<br>3 CVS_analysis<br><br>in Stata
DOI: 10.6084/m9.figshare.7886600.v2
title: Intellectual Virtue Scale Datasets

description: Raw data, cleaning instructions, and analyses associated with Article "The Intellectual Virtue Scale".<br>To reproduce the analysis in the main article, run <br>1 EFA_analysis.do,<br>2 CFA_analysis.do, and<br>3 CVS_analysis<br><br>in Stata
DOI: 10.6084/m9.figshare.7886564.v1
title: Assembly Results

description: This dataset contains fasta format files of the initial version and improved final version of draft genome assembly of Portunus trituberculatus.
DOI: 10.6084/m9.figshare.7886549
title: Counttables

description: Counttables for study
DOI: 10.6084/m9.figshare.7886528
title: Plant remains and associated insects from the Millipede site (13ML361), a burned earthlodge in southwest Iowa

description: The Millipede site is a Nebraska variant (Central Plains tradition) lodge dating to ca. AD 1300. The structure had burned, preserving a rich array of plant remains and insects. Elm was the principal wood used in lodge construction and hophornbeam (ironwood) was also heavily employed. Maize (mostly 10-row) was plentiful, and common beans also were present. Over 3,600 goosefoot (<i>Chenopodium</i> cf. <i>berlandieri</i>) seeds were recovered, most of which derive from a domesticated variety. Other abundant native domesticated plants included sumpweed and tobacco. Charred insect larvae, mostly darkling beetles (false wireworms), were associated with food remains in the bottom of an open storage pit and on the lodge floor. We conclude that the lodge’s residents vacated and intentionally burned the structure. Insect infestation may have contributed to the residents’ decision to burn the lodge, but burning also might have formed part of a closing ritual associated with decommissioning the dwelling.
DOI: 10.6084/m9.figshare.7886561.v1
title: raw_data_nstd.csv

description: Raw data obtained with the instrument we use (e-nose). Data without interpretation.
DOI: 10.6084/m9.figshare.7886516
title: Socioeconomic position, referral and attendance to rehabilitation after a cancer diagnosis: A population-based study in Copenhagen, Denmark 2010–2015

description: <b>Background:</b> Implementation of new cancer services may lead to socioeconomic differences in uptake and despite reports of more unmet needs among patients with low socioeconomic position studies have found that these patients receive less rehabilitation. We aimed to investigate associations between indicators for socioeconomic position and referral as well as attendance to rehabilitation for cancer. <b>Methods:</b> Through the Danish Cancer Registry, we identified all persons diagnosed with cancer in Copenhagen municipality 2010–2015 and obtained information on referral to and visits at the municipal rehabilitation center from municipal records. We linked the population with information on socioeconomic information and vital status through national registries. Associations were analyzed using multivariate Cox regression models. <b>Results:</b> Among 13,059 persons diagnosed with cancer a total of 2523 were referred for rehabilitation within 2.5 years from diagnosis. Compared to persons with short education, men and women with long education and men with medium education had higher adjusted hazard ratios (HR) for being referred to rehabilitation (Long: HR-men, 1.30 (95% CI: 1.06–1.59) and HR-women, 1.33 (95% CI: 1.15–1.53; Medium: HR-men, 1.23 (95% CI: 1.02–1.49)). Both men and women with children living at home had higher HR of referral (HR-men, 1.23 (95% CI: 1.00–1.52) and HR-women, 1.28 (95% CI: 1.11–1.48)). Among patients referred to rehabilitation, 81% attended a visitation consultation. Long education was associated with attendance in both genders while in men, medium education and in women high income, respectively was associated with attendance. <b>Conclusion:</b> Clear socioeconomic differences in referral and attendance to rehabilitation services indicate that socioeconomic inequality exists in patients’ transition from cancer treatment into post-treatment care. Systematic needs assessment and clarification of wish for rehabilitation should be a requisite for all cancer patients independent of their socioeconomic position.
DOI: 10.6084/m9.figshare.7886513
title: Second cancers in radically treated Norwegian prostate cancer patients

description: <b>Introduction:</b> The aim of this registry-based cohort study was to estimate second cancer (SC) risk following radical prostate cancer (PC) treatment and evaluate if the risk was influenced by radiotherapy. <b>Materials and methods:</b> We collected data from the Cancer Registry of Norway on all patients with PC as first cancer diagnosis, from 1997 to 2014. Standardized incidence ratios (SIRs) for SC were calculated by comparing our cohort to the standard male population. Subdistribution hazard ratios were estimated in treatment groups, using patients treated with radical prostatectomy (RP) as reference. <b>Results:</b> We analyzed 24,592 radically treated PC patients. The median follow-up was 7.75 and 6.25 years in the external beam radiotherapy (EBRT) and RP-groups, respectively. SIR for SC was indifferent from the reference population in 24,592 radically treated patients, higher following EBRT, SIR 1.12 (1.07–1.17), and lower following RP, SIR 0.93 (0.87–0.99). EBRT treated patients had higher rectal and urinary bladder cancer incidences, SIR 1.38 (1.16–1.64) and 1.49 (1.31–1.69), respectively. The EBRT patients and the patients treated with radiation after RP (RT after RP) had 38 and 27% higher risk of any SC. We found higher risk of bladder cancer for all treatment groups as compared to RP patients. Only EBRT treated patients showed higher risk of rectal and lung cancer. <b>Discussion/conclusions:</b> In our study, we found that PC patients treated with EBRT had an increased incidence of SC compared to the general population. Patients treated with EBRT and RT after RP were found to have increased risk of SCs, using RP patients as reference. The risks of rectal and urinary bladder cancer in patients receiving EBRT were higher compared to both the general population and to patients treated with radical prostatectomy. The risk of SC should be taken into account when discussing treatment for patients and designing follow-up.
DOI: 10.6084/m9.figshare.7886513.v1
title: Second cancers in radically treated Norwegian prostate cancer patients

description: <b>Introduction:</b> The aim of this registry-based cohort study was to estimate second cancer (SC) risk following radical prostate cancer (PC) treatment and evaluate if the risk was influenced by radiotherapy. <b>Materials and methods:</b> We collected data from the Cancer Registry of Norway on all patients with PC as first cancer diagnosis, from 1997 to 2014. Standardized incidence ratios (SIRs) for SC were calculated by comparing our cohort to the standard male population. Subdistribution hazard ratios were estimated in treatment groups, using patients treated with radical prostatectomy (RP) as reference. <b>Results:</b> We analyzed 24,592 radically treated PC patients. The median follow-up was 7.75 and 6.25 years in the external beam radiotherapy (EBRT) and RP-groups, respectively. SIR for SC was indifferent from the reference population in 24,592 radically treated patients, higher following EBRT, SIR 1.12 (1.07–1.17), and lower following RP, SIR 0.93 (0.87–0.99). EBRT treated patients had higher rectal and urinary bladder cancer incidences, SIR 1.38 (1.16–1.64) and 1.49 (1.31–1.69), respectively. The EBRT patients and the patients treated with radiation after RP (RT after RP) had 38 and 27% higher risk of any SC. We found higher risk of bladder cancer for all treatment groups as compared to RP patients. Only EBRT treated patients showed higher risk of rectal and lung cancer. <b>Discussion/conclusions:</b> In our study, we found that PC patients treated with EBRT had an increased incidence of SC compared to the general population. Patients treated with EBRT and RT after RP were found to have increased risk of SCs, using RP patients as reference. The risks of rectal and urinary bladder cancer in patients receiving EBRT were higher compared to both the general population and to patients treated with radical prostatectomy. The risk of SC should be taken into account when discussing treatment for patients and designing follow-up.
DOI: 10.6084/m9.figshare.7886528.v2
title: Plant remains and associated insects from the Millipede site (13ML361), a burned earthlodge in southwest Iowa

description: The Millipede site is a Nebraska variant (Central Plains tradition) lodge dating to ca. AD 1300. The structure had burned, preserving a rich array of plant remains and insects. Elm was the principal wood used in lodge construction and hophornbeam (ironwood) was also heavily employed. Maize (mostly 10-row) was plentiful, and common beans also were present. Over 3,600 goosefoot (<i>Chenopodium</i> cf. <i>berlandieri</i>) seeds were recovered, most of which derive from a domesticated variety. Other abundant native domesticated plants included sumpweed and tobacco. Charred insect larvae, mostly darkling beetles (false wireworms), were associated with food remains in the bottom of an open storage pit and on the lodge floor. We conclude that the lodge’s residents vacated and intentionally burned the structure. Insect infestation may have contributed to the residents’ decision to burn the lodge, but burning also might have formed part of a closing ritual associated with decommissioning the dwelling.
DOI: 10.6084/m9.figshare.7886516.v2
title: Socioeconomic position, referral and attendance to rehabilitation after a cancer diagnosis: A population-based study in Copenhagen, Denmark 2010–2015

description: <b>Background:</b> Implementation of new cancer services may lead to socioeconomic differences in uptake and despite reports of more unmet needs among patients with low socioeconomic position studies have found that these patients receive less rehabilitation. We aimed to investigate associations between indicators for socioeconomic position and referral as well as attendance to rehabilitation for cancer. <b>Methods:</b> Through the Danish Cancer Registry, we identified all persons diagnosed with cancer in Copenhagen municipality 2010–2015 and obtained information on referral to and visits at the municipal rehabilitation center from municipal records. We linked the population with information on socioeconomic information and vital status through national registries. Associations were analyzed using multivariate Cox regression models. <b>Results:</b> Among 13,059 persons diagnosed with cancer a total of 2523 were referred for rehabilitation within 2.5 years from diagnosis. Compared to persons with short education, men and women with long education and men with medium education had higher adjusted hazard ratios (HR) for being referred to rehabilitation (Long: HR-men, 1.30 (95% CI: 1.06–1.59) and HR-women, 1.33 (95% CI: 1.15–1.53; Medium: HR-men, 1.23 (95% CI: 1.02–1.49)). Both men and women with children living at home had higher HR of referral (HR-men, 1.23 (95% CI: 1.00–1.52) and HR-women, 1.28 (95% CI: 1.11–1.48)). Among patients referred to rehabilitation, 81% attended a visitation consultation. Long education was associated with attendance in both genders while in men, medium education and in women high income, respectively was associated with attendance. <b>Conclusion:</b> Clear socioeconomic differences in referral and attendance to rehabilitation services indicate that socioeconomic inequality exists in patients’ transition from cancer treatment into post-treatment care. Systematic needs assessment and clarification of wish for rehabilitation should be a requisite for all cancer patients independent of their socioeconomic position.
DOI: 10.6084/m9.figshare.7886501
title: CCDB_3627.jpg

description: Tomography of Caulobacter crescentus
DOI: 10.6084/m9.figshare.7886495
title: Extrafloral Nectary Literature

description: Literature relating to Extrafloral Nectaries (EFNs) collected in late 2016 using Scopus and Google Scholar for the PhD of Isobel Roberts - including search terms; EFN, extrafloral nectary/nectaries, plant-insect interaction(s), ant, ant defender(s) and insect(s). A total of 441 papers were returned with the search, with a final total of 362 full text documents with details pertinent to the research being included within this table. Articles ranged in date from 1975 to 2016.
DOI: 10.6084/m9.figshare.7886501.v1
title: CCDB_3627.jpg

description: Tomography of Caulobacter crescentus
DOI: 10.6084/m9.figshare.7886516.v1
title: Socioeconomic position, referral and attendance to rehabilitation after a cancer diagnosis: A population-based study in Copenhagen, Denmark 2010–2015

description: <b>Background:</b> Implementation of new cancer services may lead to socioeconomic differences in uptake and despite reports of more unmet needs among patients with low socioeconomic position studies have found that these patients receive less rehabilitation. We aimed to investigate associations between indicators for socioeconomic position and referral as well as attendance to rehabilitation for cancer. <b>Methods:</b> Through the Danish Cancer Registry, we identified all persons diagnosed with cancer in Copenhagen municipality 2010–2015 and obtained information on referral to and visits at the municipal rehabilitation center from municipal records. We linked the population with information on socioeconomic information and vital status through national registries. Associations were analyzed using multivariate Cox regression models. <b>Results:</b> Among 13,059 persons diagnosed with cancer a total of 2523 were referred for rehabilitation within 2.5 years from diagnosis. Compared to persons with short education, men and women with long education and men with medium education had higher adjusted hazard ratios (HR) for being referred to rehabilitation (Long: HR-men, 1.30 (95% CI: 1.06–1.59) and HR-women, 1.33 (95% CI: 1.15–1.53; Medium: HR-men, 1.23 (95% CI: 1.02–1.49)). Both men and women with children living at home had higher HR of referral (HR-men, 1.23 (95% CI: 1.00–1.52) and HR-women, 1.28 (95% CI: 1.11–1.48)). Among patients referred to rehabilitation, 81% attended a visitation consultation. Long education was associated with attendance in both genders while in men, medium education and in women high income, respectively was associated with attendance. <b>Conclusion:</b> Clear socioeconomic differences in referral and attendance to rehabilitation services indicate that socioeconomic inequality exists in patients’ transition from cancer treatment into post-treatment care. Systematic needs assessment and clarification of wish for rehabilitation should be a requisite for all cancer patients independent of their socioeconomic position.
DOI: 10.6084/m9.figshare.7886495.v2
title: Extrafloral Nectary Literature

description: Literature relating to Extrafloral Nectaries (EFNs) collected in late 2016 using Scopus and Google Scholar for the PhD of Isobel Roberts - including search terms; EFN, extrafloral nectary/nectaries, plant-insect interaction(s), ant, ant defender(s) and insect(s). A total of 441 papers were returned with the search, with a final total of 362 full text documents with details pertinent to the research being included within this table. Articles ranged in date from 1975 to 2016.
DOI: 10.6084/m9.figshare.7886459
title: Analysis of <i>n</i>(<sup>87</sup>Sr)/<i>n</i>(<sup>86</sup>Sr), <i>δ</i><sup>88</sup>Sr/<sup>86</sup>Sr<sub>SRM987</sub> and elemental pattern to characterise groundwater and recharge of saline ponds in a clastic aquifer in East Austria

description: Elemental and isotopic pattern of <i>n</i>(<sup>87</sup>Sr)/<i>n</i>(<sup>86</sup>Sr) and <i>δ</i><sup>88</sup>Sr/<sup>86</sup>Sr<sub>SRM987</sub> were used to characterise groundwater and recharge of saline ponds in a clastic aquifer in East Austria. Therefore, shallow, artesian and thermal groundwaters of the investigated aquifer along with rainfall and rivers were analysed using (MC) ICP-MS. The <i>n</i>(<sup>87</sup>Sr)/<i>n</i>(<sup>86</sup>Sr) ratio and elemental pattern changed with aquifer depth as a result of progressing bedrock leaching and dissolution with increasing groundwater residence time. The <i>n</i>(<sup>87</sup>Sr)/<i>n</i>(<sup>86</sup>Sr) ratio of shallow groundwater below saline ponds of 0.71019 ± 0.00044 was significantly different from thermal groundwater of 0.71205 ± 0.00035 (<i>U</i>, <i>k </i>= 2). In contrast to previous theories, this result suggested no recharge of saline ponds by upwelling paleo-seawater. Isotope pattern deconvolution revealed that rainfall accounted to about 60% of the <i>n</i>(<sup>87</sup>Sr)/<i>n</i>(<sup>86</sup>Sr) ratio of shallow groundwater below saline ponds. The <i>δ</i><sup>88</sup>Sr/<sup>86</sup>Sr<sub>SRM987</sub> values of groundwater decreased from about 0.25 ‰ in most shallow, to predominantly negative values of about –0.24 ‰ in artesian groundwater. This result indicated leaching and dissolution of weathered minerals. In turn, the <i>δ</i><sup>88</sup>Sr/<sup>86</sup>Sr<sub>SRM987</sub> of deep thermal groundwater showed positive values of about 0.12 ‰, which suggested removal of <sup>86</sup>Sr from solution by carbonate precipitation. These results highlight the potential of <i>δ</i><sup>88</sup>Sr/<sup>86</sup>Sr<sub>SRM987</sub> signature as an additional geochemical tracer.
DOI: 10.6084/m9.figshare.7886495.v1
title: Extrafloral Nectary Literature

description: Literature relating to Extrafloral Nectaries (EFNs) collected in late 2016 using Scopus and Google Scholar for the PhD of Isobel Roberts - including search terms; EFN, extrafloral nectary/nectaries, plant-insect interaction(s), ant, ant defender(s) and insect(s). A total of 441 papers were returned with the search, with a final total of 363 full text documents with details pertinent to the research being included within this table. Articles ranged from in date from 1975 to 2016.
DOI: 10.6084/m9.figshare.7886456
title: Which water formed Australian sediment-hosted precious and potch opal?

description: The means and timing of the formation of Australian sediment-hosted precious opal remain a subject of continuing debate. In this study, the question of which water formed the opal is addressed by examination of rare earth element data for opals and host rocks. The available data, mainly for Lightning Ridge, NSW, suggest a positive Eu anomaly, relative to the neighbouring Sm and Dy, occurs in opals whereas no such anomaly was found for the weathered Cretaceous sediments hosting the opal. Such anomalies may be inherited from the source rock with a similar positive Eu anomaly or generated <i>in situ</i> by severe reduction. There is no indication of major reduction processes during the opal formation that could have led to such a Eu anomaly so this is likely inherited from a source rock. As the opal host rocks did not show this anomaly, the source rocks must be external to the opal fields. Calcite cements within rocks hosting the aquifers of the Eromanga and Surat basins of the Great Artesian Basin have been reported to have a positive Eu anomaly, which strongly suggests that opal was formed by upwelling Great Artesian Basin artesian waters. This work has also highlighted variations in trace-element concentrations in opals, which indicate significant variation in the source water composition during opal formation or different water sources were involved. Either of these is indicative of the source for the opal with its trace elements derived from external sources. These conclusions have significant implications to considerations of how opal formed, and hence, for the exploration for other deposits and to the chemistry and timing that led to the formation of opal.