cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/tkw
title: microCT - Soft Tissue of a K14-Cre;Fgfr2fl/fl mouse at E17.5

description: Mouse ID: ZZ290 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tna
title: microCT - Soft Tissue of C57BL6J mouse at P0

description: Mouse ID: JI221 This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/trr
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm407

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6:51001775-51003272 **Name:** mCF93 **Vista Enhancer ID:** mm407 **Nearest craniofacial gene or locus:** none **Enhancer expression:** other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF93metadata.txt from the External Reference section
DOI: 10.25550/txe
title: microMRI images of skulls of Wnt1Cre * Tgfbr2fl/+ * Alk5fl/fl mice at E18.5

description: microMRI images of skulls of Wnt1Cre * Tgfbr2fl/+ * Alk5fl/fl mice at E18.5. The dataset contains 3-D images in niftii format for each of 6 mice.
DOI: 10.25550/typ
title: microCT - Soft Tissue of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E15.5

description: Mouse ID: JI321 This dataset includes microCT scans of the skull of a Wnt1-Cre;Tgfbr2fl/fl;Alk5fl/+ mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tz2
title: microCT - Bone Tissue of a Tgfbr2fl/fl;Alk5fl/+ mouse at E17.5

description: Mouse ID: AS326 This dataset includes microCT scans of the skull of a Tgfbr2fl/fl;Alk5fl/+ mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v2e
title: microCT - Bone Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E17.5

description: Mouse ID: JI247 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v2t
title: microCT - Bone Tissue of an Msx1-/- mouse at E16.5

description: Mouse ID: AH255 This dataset includes microCT scans of the skull of an Msx1-/- mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vba
title: microCT - Soft Tissue of Msx1-/- Mouse at E18.5

description: Mouse ID: AH245 This dataset includes 1 microCT scan of the skull of an Msx1 mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vby
title: Gene expression profiling of the tongue primordium in mice with a conditional inactivation of Tgfbr2 at embryonic day E13.5

description: We performed global gene expression analyses of the tongue primordium in Wnt1-Cre;Tgfbr2^fl/fl and Tgfbr2^fl/fl control mice at embryonic day E13.5. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the Enzo BioArray Terminal Labeling Kit with Biotin-ddUTP and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cDNA was applied to GeneChip® Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39000 transcripts. Microarrays were hybridized, processed and scanned as previously described using manufacturer’s recommended conditions.
DOI: 10.25550/vkw
title: microCT - Soft Tissue of Tgfbr2 control mouse at E15.5

description: Mouse ID: JI303 This dataset includes microCT scans of the skull of a Tgfbr2 control mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vp6
title: microCT - Soft Tissue of a Tgfbr2fl/fl Control mouse at E18.5

description: Mouse ID: JI137 This dataset contains microCT scans of head tissue of a Tgbr2fl/fl Control mouse at stage E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vva
title: microCT - Bone Tissue of Msx1-/-mouse at P0

description: Mouse ID: AH350 This dataset includes microCT scans of the skull of an Msx1-/-mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vvy
title: microCT - Bone Tissue of a TGFBR2fl/fl mouse at E18.5

description: Mouse ID: JI150 This dataset contains microCT scans of skull bones of a TGFBR2fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vxm
title: Transgenic Mouse Enhancer OPT Assays - mm39

description: ChIP-seq, RNA-seq and transgenic assays to identify non-coding regulatory elements (enhancers) active during craniofacial development. Follow this [link](http://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&experiment_id=39&organism_id=2) to see associated data in the VISTA browser.
DOI: 10.5281/zenodo.3438437
title: Impacts of representing heterogeneous distribution of cloud liquid and ice on phase partitioning of Arctic mixed-phase clouds with NCAR CAM5

description: The model simulation outputs for the paper "Impacts of representing heterogeneous distribution of cloud liquid and ice on phase partitioningof Arctic mixed-phase clouds with NCAR CAM5".
DOI: 10.25550/tr4
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm401

description: See link to the data preparation protocols for this study in the Additional Information section . See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6:50760703-50761820 **Name:** mCF87 **Vista Enhancer ID:** mm401 **Nearest craniofacial gene or locus:** none **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF87metadata.txt from the External Reference section
DOI: 10.25550/trg
title: Gene expression RNA-Seq - mouse E14.5 Wild Type Posterior Medial Palate

description: This data set contains FASTQ RNA-Seq data for the Posterior Medial region of the palatal shelves at the E14.5 time-point in the developing mouse. Wild-type CD-1 outbred mice were used in this experiment. For each different region: Anterior Medial Palate - From the anterior region of the palatal shelf (closer to the front of the face). Also closer to the center of the palatal shelves (closer to the Medial-Edge Epithelia). Posterior Medial Palate - From the posterior region of the palatal shelf (closer to the hind-brain). Also located closer to the center of the palatal shelves (closer to the MEE). Anterior Lateral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The lateral region located further from the MEE. Posterior Lateral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The lateral region located further from the MEE. Anterior Nasal Palate - From the anterior region of the palatal shelf (closer to the front of the face). The nasal half of the palate located closer to the nose. Posterior Nasal Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The nasal half of the palate located closer to the nose. Anterior Oral Palate - From the anterior region of the palatal shelf (closer to the front of the face). The oral half of the palate located closer to the tongue. Posterior Oral Palate - From the posterior region of the palatal shelf (closer to the hind-brain). The oral half of the palate located closer to the tongue. There are 3 replicates for each region collected (four for the ant. nasal region). Regions were isolated using Laser Capture Microdissection with the Arcturus Veritas instrument, then RNA-purified and processed for RNA Seq. The RNA-Seq was performed using 50 bp single-end reads (at least 20 million reads). Sequencing was performed on the Illumina HiSeq 2500.
DOI: 10.25550/twg
title: Gene expression profiling of the tongue bud in mice with a conditional inactivation of Alk5 at embryonic day E13.5

description: We performed global gene expression analyses of the tongue bud in Alk5^fl/fl ; Wnt1-Cre and Alk5^fl/fl control mice at embryonic day E13.5. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the GeneChip® IVT Labeling Kit and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cRNA applied to GeneChip Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39,000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.
DOI: 10.25550/tzy
title: Gene expression profiling of the mandibular arch in mice with a conditional inactivation of Alk5 at embryonic day E11.5

description: We performed global gene expression analyses of the mandibular arch in Alk5^fl/fl ; Wnt1-Cre and Alk5^fl/fl control mice at embryonic day E11.5. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the GeneChip® IVT Labeling Kit and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cRNA was applied to GeneChip, Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39,000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.
DOI: 10.25550/v1e
title: microCT - Bone Tissue of a Tgfbr2fl/+;Alk5fl/fl mouse at E17.5

description: Mouse ID: AS327 This dataset includes microCT scans of the skull of a Tgfbr2fl/+;Alk5fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v1g
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm391

description: See link to the data preparation protocols for this study in the Additional Information section . See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:21001721-21003173 **Name:** mCF77 **Vista Enhancer ID:** mm391 **Nearest craniofacial gene or locus:** none **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF77metadata.txt from the External Reference section
DOI: 10.25550/v4a
title: microCT - Soft Tissue of K14-Cre;Fgfr2flfl Mice at P0

description: This dataset includes microCT scans of the skull of two K14-Cre; Fgfr2flfl mice at P0. The scans are in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v4e
title: Micro-CT images of adult mouse skulls, Collaborative Cross A/J x WSB

description: The dataset consists of a set of images for 15 mice with one parent from the A/J strain, and the other from the WSB strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/v6c
title: microCT - Bone Tissue of a Myf5-Cre;Smad4fl/fl mouse at E18.5

description: Mouse ID: DH213 This dataset includes microCT scans of the skull of a Myf5-Cre;Smad4fl/fl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v6p
title: microCT - Soft Tissue of Tgfbr2 Control Mouse at E18.5

description: Mouse ID: JI271 This dataset includes microCT scans of the skull of a Tgfbr2 Control Mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v8r
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm832

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr5: 12505539-12509076 **Name:** mAN261 **Vista Enhancer ID:** mm832 **Nearest craniofacial gene or locus:** Sema3d **Enhancer expression:** positive **Tissues where active:** branchial arch, ear, nose **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vbe
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm386

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr14:46867125-46868800 **Name:** mCF72 **Vista Enhancer ID:** mm386 **Nearest craniofacial gene or locus:** BMP4 **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF72metadata.txt from the External Reference section
DOI: 10.25550/vbm
title: microCT - Soft Tissue of C57BL6J at E18.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vh2
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm449

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr19:60091349-60092721 **Name:** mCF135 **Vista Enhancer ID:** mm449 **Nearest craniofacial gene or locus:** VAX1 **Enhancer expression:** other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF135metadata.txt from the External Reference section
DOI: 10.25550/vh6
title: collagen1a1a (col1a1a) mutant zebrafish

description: MicroCT imaging of col1a1a mutant zebrafish
DOI: 10.25550/vjm
title: microCT - Soft Tissue of a Fgfr2fl/fl Control mouse at E16.5

description: Mouse ID: ZZ353 This dataset includes microCT scans of the skull of a Fgfr2fl/fl Control mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vvj
title: Fibroblast growth factor 20a (fgf20a) mutant zebrafish

description: MicroCT imaging of fgf20a mutant zebrafish
DOI: 10.5281/zenodo.3438436
title: Impacts of representing heterogeneous distribution of cloud liquid and ice on phase partitioning of Arctic mixed-phase clouds with NCAR CAM5

description: The model simulation outputs for the paper "Impacts of representing heterogeneous distribution of cloud liquid and ice on phase partitioningof Arctic mixed-phase clouds with NCAR CAM5".
DOI: 10.24431/rw1k32c
title: Sea Otter Diet Data, Long-term Monitoring of Ecological Communities in Kachemak Bay, 2008-2015: Gulf Watch Alaska, Nearshore Component

description: These data are part of the Gulf Watch Alaska (GWA), Nearshore component of the Exxon Valdez Oil Spill Trustee Council, project numbers 12120114-L, 13120114-L, 14120114-L, and 16120114-L. Gulf Watch Alaska is the long-term ecosystem monitoring program of the Exxon Valdez Oil Spill Trustee Council for the marine ecosystem affected by the 1989 oil spill. This dataset is three comma-separated value (csv) files exported from Microsoft Excel. The data contains information on sea otter diet as described from scat samples that were systematically collected in Kachemak Bay during winter and spring from 2008 to 2015. Scat samples were dried and the volume percent of prey estimated to the nearest discernable taxonomic level.
DOI: 10.25550/tra
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm447

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr19:59341620-59342768 **Name:** mCF133 **Vista Enhancer ID:** mm447 **Nearest craniofacial gene or locus:** VAX1 **Enhancer expression:** Other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF133metadata.txt from the External Reference section
DOI: 10.25550/ts4
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm433

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr3:121656460-121657306 **Name:** mCF120 **Vista Enhancer ID:** mm433 **Nearest craniofacial gene or locus:** ABCA4 This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF120metadata.txt from the External Reference section
DOI: 10.25550/tsa
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm389

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:19999596-20000707 **Name:** mCF75 **Vista Enhancer ID:** mm389 **Nearest craniofacial gene or locus:** None **Enhancer expression:** other This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF75metadata.txt from the External Reference section
DOI: 10.25550/tsc
title: microMRI images of skulls of Smad4FF mice at E16.5

description: microMRI images of skulls of Smad4FF mice at E16.5. The dataset contains 3-D images in niftii format for 1 mouse.
DOI: 10.25550/tyr
title: microCT - Bone Tissue of K14-Cre; Tgfbr2flfl mice at E16.5

description: Mouse ID: JI304 This dataset includes microCT scans of the skulls of K14-Cre;Tgfbr2flfl mice at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v26
title: microCT - Soft Tissue of Wnt1-Cre; Tgrbr2flfl mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2flfl mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v44
title: microCT - Soft Tissue of a K14-Cre;Fgfr2fl/fl mouse at E17.5

description: Mouse ID: ZZ289 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2fl/fl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v70
title: microCT - Soft Tissue of a Tgfbr2fl/fl mouse at E15.5

description: Mouse ID: JI318 This dataset includes microCT scans of the skull of a Tgfbr2fl/fl mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v7p
title: microCT - Soft Tissue of K14-Cre; Tgfbr2flfl mice at E16.5

description: Mouse ID: JI304 This dataset includes microCT scans of the skulls of K14-Cre;Tgfbr2flfl mice at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format