cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6075/j0319tx5
title: CIL:2755, Caenorhabditis elegans. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 8 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
DOI: 10.6075/j02z1522
title: CIL: 52334, Homo sapiens, High-grade serious overian cancer. In Cell Image Library

description: One z layer of a z-stack at the given tile position
description: Tile x=5, y=2, z=15 from BL_024216_Myc_Terc
description: Imaging mode: Fluorescence in situ hybridization (FISH)
Visualization methods: Nikon Eclipse fluorescence inverted microscope equipped with a charge-coupled device camera (Andor Neo sCMOS), using filter sets for DAPI/ YGFP/TRITC/CY GFP with an objective lens (Plan Apo VC 100x, Nikon). Captured with 100x magnification of the objective and a pixel size of 0.07 microns
DOI: 10.6075/j0jm29qh
title: CIL:35766, Saccharomyces cerevisiae. In Cell Image Library

description: A time lapse experiment of Saccharomyces cerevisiae expressing GFP tagged Clb2. Clb 2 is a cyclin-dependent protein kinase regulator, involving in G2/M transition of mitotic cell cycle and positively regulating spindle pole body separation. These phase and GFP images are part of an image group containing CIL 35760-35779. Note that there are additional groups of images of other cell cycle regulator proteins by the same authors available in the Library.
description: Time-lapse images were collected on a DeltaVision system (Olympus IX71) with 60x/1.42 NA objective at 5 minute intervals. Please read the microscopy section of the referenced paper for details before image analysis.
description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: fluorescence microscopy; phase contrast microscopy
Parameter imaged: fluorescence emission; elastic scattering of photons
Source of contrast: distribution of a specific protein; differences in amount of elastic light scattering
Visualization methods: EGFP; visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0rn36w3
title: CIL:9060, Nephrotoma suturalis, spermatocyte. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD); Processed image based on 5 recorded images
Imaging mode: polarization microscopy
Parameter imaged: UV/visible/IR photons
Source of contrast: intrinsic birefringence
Visualization methods: Processed image based on 5 recorded images
Processing history: 5-frame algorithm
description: The events of meiosis I and II in a living insect spermatocyte beginning with the breakdown of the nuclear envelope at diakinesis through to the completion of cytokinesis. Testes from the Crane fly Nephrotoma suturalis were observed with time-lapse polarization using a Nikon Microphot SA, equipped for liquid crystal polarized light microscopy (LC-PolScope, CRi, Woburn Massachusetts) 60x/1.4 PlanApo oil immersion objective, 1.4 NA oil imm. condenser, with 1.5x zoom lens. Image acquisition and processing Camera: Images captured every 2 min over 5 hr 18 min by a QImaging Retiga EXi CCD camera. Raw images were processed using a 5-frame algorithm (Shribak and Oldenbourg, 2003). Movie images represent computed retardance as gray values ranging from 0 nm retardance (black) to 2 nm retardance or higher (white).
DOI: 10.6075/j0ms3stc
title: CIL:32324, Homo sapiens, endocrine-paracrine cell of prostate gland, basal cell of prostate epithelium, luminal cell of prostate epithelium, blood vessel endothelial cell, perineural cell, sheath cell, leukocyte, prostate stromal cell, smooth muscle cell of prostate. In Cell Image Library

description: Preparation: acetone fixed tissue; tissue in polyethylene glycol embedment
Relation to intact cell: cryostat-sectioned tissue
Item type: recorded image
Imaging mode: widefield illumination; bright-field microscopy
Parameter imaged: absorption of illumination
Source of contrast: differences in adsorption or binding of stain; distribution of a specific protein; differences in intrinsic optical density
Visualization methods: hematoxylin; primary antibody plus labeled secondary antibody; horseradish peroxidase; 3,3'-diaminobenzidine (DAB); biotin-avidin amplification
Processing history: unprocessed raw data
Data qualification: Raw;intensitiesquantitation
description: CD105 Immunostain of Human Prostate. Tissue section of human prostate containing adenocarcinoma that has been immunostained for the cell-surface antigen CD105. Nuclei are stained in blue.This image is part of a collection of images generated from several specimens to characterize the distribution of CD105 in human prostate tissue. 

This image is part of a large collection of immunohistochemistry images of cell-surface antigens generated by the SCGAP Urologic Epithelial Stem Cells (UESC) Project. The overall goal of the project is to characterize and isolate epithelial stem cell populations from two urologic organs, the prostate and bladder. Links are provided below for the UESC Project database, the entire human prostate immunostain summary, the CD105 immunostain summary, and information on the specimen that this image is from. Other images of CD105 human prostate immunostains are accessible following the group link.
description: The "Image ID" for this image is provided in the Attribution section. Because the images are systematically named, information such as the antibody used in staining, the organism, tissue type, tissue block, and magnification are all encoded in the Image ID. As an example, the image 'CD44 98-395F HP ba 100.jpg' was stained with anti-CD44, was derived from human prostate tissue block 98-395F, is human prostate tissue (HP), and an image of microscopic field of view b within field a was captured at 100× magnification.


Complete technical details available in the Protocol Section of SCGAP UESC website (link provided). Briefly, radical prostatectomy specimens were transverse-sectioned 3mm thick and tissue blocks were embedded in precooled OCT (Tissue-tek) medium. Frozen tissue blocks were thin-sectioned (5µ) and fixed in cold acetone. A monoclonal primary antibody (PharMingen) was used followed by a biotinylated secondary antibody. Bound antibody was detected using avidin-biotin-peroxidase (Vector Labs) and diaminobenzidine (DAB). Sections were lightly counterstained with hematoxylin. Images were acquired using a digital camera and either an Olympus BX41 or Olympus BH2 microscope.
DOI: 10.6075/j0sq8z1w
title: CIL:35060. In Cell Image Library

description: Procedures for detergent extraction, immunostaining, S1 decoration, light, and EM were described previously (Svitkina et al., 1995, 1996, 1997;Verkhovsky et al., 1995; Svitkina and Borisy, 1998).
description: Electron micrograph of keratocyte or fibroblast lamellipodial actin network after unprotected extraction. All examples demonstrate frequent branching of actin filaments. Image corresponds to a single panel from Figure 2d in J Cell Biol. 1999 May 31;145(5):1009-26. All of the panels from Figure 2d can be found as CIL 35060-35068.
description: Preparation: permeabilized tissue; glutaraldehyde fixed tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: transmission electron microscopy (TEM)
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: shadowing and plating; platinum replica
Processing history: unprocessed raw data
DOI: 10.6075/j0ks6r01
title: CIL: 51946, Mus musculus, RAW 264.7 TIB-71. In Cell Image Library

description: Imaging mode: DICM
Visualization methods: Spinning disc confocal DICM & widefield DICM Using a Nikon TiE microscope equipped with a 40x, 0.95 N.A. objective and a Hamamatsu ORCA-Flash 4.0 V3 Digital CMOS camera, or a Nikon TiE spinning-disc confocal microscope equipped with a Yokogawa CSU-X1 scanning unit, an Andor iXon 888 EMCCD camera, and a 60x, 1.3 N.A. water-immersion objective or a 40x, 0.95 N.A. objective
description: A novel cell population analysis to quantify both initial and long-term drug effects, namely pseudopod adaptation and recovery following an initial drug-induced perturbation, adding drug slowly in 1/4 increments over 90 minutes.
description: ~1200 cells were imaged on glass. More gradual additions of drug or carrier were carried out in four equal increments at 0, 30, 60, 90 min, together yielding the same final drug concentration indicated in rapid addition studies. The subpopulation of ~100 cells with extended, leading edge pseudopods at t = 0 were imaged and counted in each unit area at the indicated timepoints during a 125 min observation period T=37C

Images are provided as uncorrected, 16 bit .nd2 files to preserve all original data. To view these .nd2 files:
1. Download ImageJ viewer at (https://imagej.nih.gov/ij/download.html)
2. Download the BioFormats.jar package at (https://www.openmicroscopy.org/bio-formats/downloads/)
3. Open the ImageJ directory after installation and drag the extracted BioFormats.jar package into the "Plugins" subdirectory
4. Open an .nd2 image using imageJ and select opening options when prompted, if desired. If no modifications are desired, select "OK"
5. The 16 bit image will typically look dark and will require brightness adjustment.
6. In the ImageJ toolbar, select Image &gt;&gt; Adjust &gt;&gt; Brightness/Contrast and select "Auto", or manually set the brightness and contrast.
DOI: 10.6075/j0610zgh
title: CIL:9302, Rana catesbeiana, barrier epithelial cell. In Cell Image Library

description: This group of micrographs illustrate the ultrastructural characteristics of the middle layer of the three meningeal layers that cover the central nervous system The arachnoid cells contain abundant intermediate filaments that occupy a substantial volume of the cytoplasm. In some cells the intermediate filaments are organized into numerous coils of relatively uniform size and lie parallel to the outer surface of the central nervous system, such that sections cut tangential to the membrane surface (see CIL:9301) show the spirals but transverse sections such as this one do not. The plasma membrane of these cells has many caveolae. Adjacent arachnoid cells are connected by large desmosomes.

Images were recorded using a Philips EM301 TEM at 80 kv. Original glass plates were scanned and digitized using an Epson V750 flatbed scanner with a step size of 15 micrometers.

This group of images complement those published in the reference below.

Reference: Michaels, JE, Tornheim, PA. Cell Tissue Res. 236:693-697 (1984).
description: Preparation: glutaraldehyde fixed tissue; osmium tetroxide fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: uranyl salt; lead salt; osmium tetroxide
Processing history: unprocessed raw data
DOI: 10.6075/j0pk0f0w
title: CIL:35998, Homo sapiens, Cavia porcellus, acinar cell. In Cell Image Library

description: Figures 377 (upper) and 378 (lower) from Chapter 15 (Cytoplasmic Inclusions) of 'The Cell, 2nd Ed.' by Don W. Fawcett M.D. Comparison between the human pancreatic acinar cell (upper) and guinea pig pancreatic cell (lower) reveals species differences in size and density of secretory vesicles in the same cell type. The zymogen granules in the human acinar cell are more dense, or osmiophilic than those of the guinea pig. Upper image by Susumo Ito and Arthur Like; lower from R. Bolender, J. Cell Biol. 61:269-87, 1974. A PDF copy of the accompanying chapter is available on the ASCB‚Äôs BioEDUCATE website.
description: Preparation: crosslinking-fixative fixed tissue; tissue in plastic embedment
Relation to intact cell: microtome-sectioned tissue
Item type: transmission electron microscopy (TEM)
Imaging mode: illumination by electrons; detection of electrons
Parameter imaged: electron density
Source of contrast: stain with broad specificity
Visualization methods: osmium tetroxide
Data qualification: Processed
DOI: 10.5281/zenodo.17458036
title: BETA-FOR_SP5_DungBeetles_baited_pitfall_2023

description: This dataset contains dung beetle species sampled with pitfall traps baited with cow dung on all BETA-FOR patches in spring and late summer 2023. Pitfall traps were placed in the center of the patch for 48 hours and dung beetles of the families Scarabaeidae and Geotrupidae were identified to species level. Pitfall traps were installed directly after a dung removal experiment (https://doi.org/10.5281/zenodo.15463792).
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*family: dung beetle familiy

*species: dung beetle species

*abundance: number of individuals caught

*total_biomass: total biomass of all individual of the species caught (abundance x average_biomass)

*average_biomass: average biomass of the dung beetle species, based on 5 individuals from each study region weighed in the laboratory

*season: sampling season

*year: sampling year

*bait: material used for baiting of the dung beetles

*sampling_method: sampling method used

*data_collector: person collecting the data and supervising field work teams

*collection_date: date of collection of pitfall traps
DOI: 10.5281/zenodo.17458035
title: BETA-FOR_SP5_DungBeetles_baited_pitfall_2023

description: This dataset contains dung beetle species sampled with pitfall traps baited with cow dung on all BETA-FOR patches in spring and late summer 2023. Pitfall traps were placed in the center of the patch for 48 hours and dung beetles of the families Scarabaeidae and Geotrupidae were identified to species level. Pitfall traps were installed directly after a dung removal experiment (https://doi.org/10.5281/zenodo.15463792).
description: Variables Description################

*patchLabel_BETAFOR: unique BETA-FOR patch label

*patch: patch number

*family: dung beetle familiy

*species: dung beetle species

*abundance: number of individuals caught

*total_biomass: total biomass of all individual of the species caught (abundance x average_biomass)

*average_biomass: average biomass of the dung beetle species, based on 5 individuals from each study region weighed in the laboratory

*season: sampling season

*year: sampling year

*bait: material used for baiting of the dung beetles

*sampling_method: sampling method used

*data_collector: person collecting the data and supervising field work teams

*collection_date: date of collection of pitfall traps
DOI: 10.21227/c272-1868
title: "RareMed-Dialogue"

description: "This is a Chinese multi-turn dialogue dataset constructed based on real complex and rare clinical cases."
DOI: 10.15468/dl.66tsys
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chloropicon roscoffensis, Skeletonema menzelii, Hemiarma marina, Cymbastela coralliophila, Sahlingia subintegra, Nemalecium lighti, Micromonas commoda)",
 "StateProvince is Western Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009457-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60867/00000036
title: Cross-species phenotype of barley, oat, lupin, and chickpea collected from various trials across Western Australia

description: This dataset comprises cross-species phenotype data for barley, oat, lupin, and chickpea. The collected data consisted of RNA-seq from Lupin and phenotype data from barley, oat and chickpea, which included many key agronomic traits, such as flowering time, plant height, grain yield, grain plumpness, growing index and tolerant index. The phenotype data were collected from 2014 to 2025 from various trials across Western Australia, including data from approximately 900 barley, 600 oat and 500 chickpea accessions. This dataset is a combination of outputs from multiple GRDC-funded projects: UMU2404-010RTX, UMU2404-010RTX, UMU2302-007RSX, UMU1606-002RMX, UMU1406-002RTX, UMU1903-004RTX, UMU2303-003RTX and UMU2306-008RSX.
DOI: 10.6075/j08g8jw2
title: CIL:19535, Didinium nasutum, Paramecium sp., cell by organism, eukaryotic cell, Eukaryotic Protist, Ciliated Protist. In Cell Image Library

description: Didinium captures Paramecium. Also showing metachronous waves of cilia in the two characteristic ciliary girdles of Didinium nasutum. This micrograph was taken in 1968 by G. Antipa on a Cambridge Mark IIA operating at 20kV. The negative magnification is 545X. The raw film was scanned with an Epson Perfection V750 Pro. This image is available for quantitative analysis. Further details are available at Wessenberg, H. and Antipa, G. 1970. Capture and ingestion of Paramecium by Didinium nasutum. J. Protozool. 17:250-270.
description: Preparation: chemically fixed tissue; lyophilized specimen; Parducz fixative; Au/Pd metal sputter-coat
Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: illumination by electrons; secondary_electron imaging
Parameter imaged: illumination by electrons; secondary electron generation; secondary_electron imaging
Source of contrast: detection of electrons
Visualization methods: shadowing and plating
Processing history: recorded image; film
Data qualification: Raw
DOI: 10.6075/j0bp023m
title: CIL:195, Mus musculus, fibroblast, permanent cell line cell. In Cell Image Library

description: Preparation: methanol fixed tissue
Relation to intact cell: whole mounted tissue
Item type: microscopy
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: local accumulation of fluorescent probe
Visualization methods: Alexa Fluor 594; primary antibody plus labeled secondary antibody
Processing history: unprocessed raw data
description: The distribution of the mitochondrial inner membrane protein mitofilin, visualized here with antibody to mitofilin , highlights the tubular morphology of mitochondria in mouse 3T3 fibroblasts in G1. Cells were serum-starved for 48 hours, then cultured in normal serum levels for 8 hours, before fixation in methanol and immunolabeling with the polyclonal mitofilin antibody of Jiping Zha
 
 Microscope - Zeiss Axioplan I
 Illumination - Mercury arc lamp
 Objective - 100X oil/1.3 NA
 Intermediate lens between obj and camera - 0.63X
 Camera - Axiocam MRM CCD
 Filters: Ex 560/40, Em 630/60, dichroic 595
DOI: 10.6075/j0qn65mx
title: CIL:40471, Homo sapiens, osteosarcoma. In Cell Image Library

description: Single slice confocal images representing one optical slice of a cell stained for the Human Protein Atlas (HPA) antibody 
 HPA023310 (shown in green). HPA023310 is a polyclonal Anti-BAIAP2 antibody that is mainly localized to the plamsa membrane and the cytoplasm but also stains the nucleus. The cells are also stained with reference markers in order to facilitate the annotation of the subcellular distribution of the protein targeted by the HPA antibody. The following probes/organelles are used as references; (i) DAPI for the nucleus (blue) and (ii) anti-tubulin antibody as internal control and marker of microtubules (red)
description: The use of data and images from this site in publications and presentations is permitted provided that the following conditions are met:

The publication and/or presentation are solely for informational and non-commercial purposes.

The source of the data and/or image is referred to this site (www.proteinatlas.org) and/or the above publication is cited.
description: Preparation: chemically fixed tissue; permeabilized tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image
Imaging mode: confocal microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: primary antibody plus labeled secondary antibody
Processing history: unprocessed raw data
Data qualification: Raw
DOI: 10.6075/j00v8c0n
title: CIL:1988, Caenorhabditis elegans. In Cell Image Library

description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
DOI: 10.6075/j0c24vqt
title: CIL:1987, Caenorhabditis elegans. In Cell Image Library

description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Visualization methods: visualization of contiguous regions
Processing history: unprocessed raw data
description: Terminal Bulb is a dataset of DIC (differential interference contrast) 20x microscopy images of the pharynx terminal bulb of C. elegans at different ages (0, 2, 4, 6, 8, 10, 12 days). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1587, 1694, 1905, 2213, 2622, 2544, and 2606, respectively.
description: The purpose of the dataset C. elegans terminal bulb aging is to deduce the age of the nemathode based on images of the pharynx terminal bulb (part of the eating apparatus). Images of C. elegans were taken at different chronological ages. This image is part of the day 4 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.