cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.48443/qjmn-d610
title: Benthic microbe marker gene sequences (DP1.20280.001)
title: RELEASE-2025

description: This data product contains the quality-controlled laboratory metadata and 16S and ITS marker gene sequences derived from NEON's benthic microbial sampling in wadeable streams. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Queries for the basic data product package will return metadata tables that include laboratory methods and DNA extraction, PCR amplification, and sequencing metadata for samples from the queried sites and date range. Queries for the expanded package will also include a table containing links to the raw sequence data files, which can be used to download the sequences from the NEON data portal. 

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.
 
amb_fieldParent:  60

mmg_benthicDnaExtraction:  240

mmg\_benthicMarkerGeneSequencing\_16S:  240

mmg\_benthicMarkerGeneSequencing\_ITS:  240

mmg\_benthicPcrAmplification\_16S:  240

mmg\_benthicPcrAmplification\_ITS:  240

mmg_benthicRawDataFiles: 240
description: Benthic microbe samples are collected at the same time and location as periphyton (microalgae) samples three times per year in wadeable streams during aquatic biology bout windows, roughly in spring, summer, and fall. Samples are collected using field-sterile methods using the most appropriate sampler for the habitat and substratum type, including rock scrubs, grab samples, and epiphyton. In wadeable streams, periphyton samples are collected in the two most dominant benthic habitat types (e.g. riffles, runs, pools, step pools). Cobble scrubs are filtered on 0.22 um Sterivex capsule filters, capped and flash-frozen in the field. Grab samples of sediment (silt, sand) or plant material/epiphyton are collected when appropriate. All samples are frozen on dry ice in the field and are shipped to an analytical facility for DNA extraction, sample preparation and high-throughput sequence analysis using primer sets targeting the ribosomal RNA gene operon. Laboratory metadata are passed through the NEON automated ingest process for QC testing and are published on the NEON data portal. DNA sequence data undergo QC testing and unique URLs are generated to enable data download. Instrumentation:
DOI: 10.48443/n5a6-tk59
title: Surface water microbe metagenome sequences (DP1.20281.001)
title: RELEASE-2025

description: This data product contains the quality-controlled laboratory metadata and minimally processed sequence data from NEON's surface water microbial shotgun metagenomics sequencing. For details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage. Queries for the basic data product package will return metadata tables that include field observations and measurements, laboratory methods, and results from DNA extraction, sample preparation, and sequencing for samples from the specified sites and within the specified date range. Queries for the expanded package will also include a table containing links to the raw sequence data files. 

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

mms_swMetagenomeDnaExtraction:  240

mms_swMetagenomeSequencing:  240

mms_swRawDataFiles: 240

fieldSuperParent: 30 days

fieldGenetic: 30 days
description: Surface water metagenomic samples are collected once per year during the approximate period of peak productivity. The metagenomics sampling occurs at the same time and location as surface water chemistry sampling. In wadeable streams, samples are collected near the downstream S2 sensor location. In lakes and rivers, samples are collected near the buoy sensor set at 1 sampling depth in unstratified systems and up to 3 sampling depth(s)in stratified lakes. Surface water grab samples are filtered on 0.22 um Sterivex capsule filters, capped and flash-frozen in the field. The filters are stored on dry ice in the field, and later are shipped frozen to an analytical facility for DNA extraction, sample preparation and shotgun metagenomic sequencing. Laboratory data are then delivered to NEON, where they undergo QC testing and are published on the NEON Data Portal. Instrumentation:
DOI: 10.48443/m5my-qh06
title: Surface water microbe marker gene sequences (DP1.20282.001)
title: RELEASE-2025

description: This data product contains the quality-controlled laboratory metadata and 16S and ITS marker gene sequences derived from NEON's surface water microbial sampling. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Queries for the basic data product package will return metadata tables that include laboratory methods and DNA extraction, PCR amplification, and sequencing metadata for samples from the queried sites and date range. Queries for the expanded package will also include a table containing links to the raw sequence data files, which can be used to download the sequences from the NEON data portal. 

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.

amc_fieldGenetic:  30

amc_fieldSuperParent:  30

mmg_swDnaExtraction:  240

mmg\_swMarkerGeneSequencing\_16S:  240

mmg\_swMarkerGeneSequencing\_ITS:  240

mmg\_swPcrAmplification\_16S:  240

mmg\_swPcrAmplification\_ITS:  240

mmg_swRawDataFiles: 240

mmg_swMarkerGeneSequencingQA_16S: 240

mmg_swMarkerGeneSequencingQA_ITS: 240

mmg_swPcrAmplificationQA_16S: 240

mmg_swPcrAmplificationQA_ITS: 240
description: Surface water microbe samples are collected at the same time and location as surface water cell count samples and surface water chemistry samples once per month in wadeable streams (12 times per year) and every-other month in lakes and rivers (6 times per year). In wadeable streams, surface water microbe samples are collected near the downstream S2 sensor location. In lakes and rivers, microbial samples are collected near the buoy sensor set at 1 sampling depth in unstratified systems and up to 3 depths in stratified lakes. Surface water grab samples are filtered on 0.22 um Sterivex capsule filters, capped and flash-frozen in the field. The filters are stored and shipped frozen to an analytical facility for DNA extraction, sample preparation and high-throughput sequence analysis using primer sets targeting the ribosomal RNA gene operon. Laboratory metadata are passed through the NEON automated ingest process for QC testing and are published on the NEON data portal. DNA sequence data undergo QC testing and unique URLs are generated to enable data download. Instrumentation:
DOI: 10.48443/03mj-t174
title: Water quality (DP1.20288.001)
title: RELEASE-2025

description: Water quality consists of a suite of physical and chemical parameters characterizing the health of an aquatic ecosystem. This data product contains in-situ, sensor-based measurements of specific conductance, dissolved oxygen, pH, turbidity, fluorescent dissolved organic matter (fDOM) and chlorophyll-a, available as 1-min measurements in wadeable stream sites and 5-min measurements in lake and river sites.  Chlorophyll-a is only measured in lake and river sites.

Latency: Data collected in any given month are published during the second full week of the following month.
description: At wadeable stream sites, multisondes are deployed at an upstream and downstream location, except for Blue River (BLUE), which only has a downstream location.  Multisondes are collocated with PRT temperature sensors at both locations, and SUNA nitrate sensor at the downstream locations.  Specific conductance, dissolved oxygen, pH and turbidity are measured at both the upstream and downstream locations, while fDOM is only measured at the downstream location.  Depth and chlorophyll-a are not measured in wadeable stream sites.  Sampling frequency for wadeable stream sites is 1-min.  At lake and river sites, the multisonde is deployed from a buoy and measures depth, specific conductance, dissolved oxygen, pH, turbidity, fDOM and chlorophyll-a.  Sampling frequency is 5-min.  At deeper lake sites (BARC, CRAM, LIRO, PRLA & TOOK) vertical profiles of the water column are collected every 4-hrs.  At the remaining lake and river sites the multisonde remains at a fixed depth of 0.5m below the water surface. 

Instrumentation:
YSI EXO2 Multiparameter Sonde with conductivity and temperature (599827), dissolved oxygen (599100), pH(599706), turbidity (599101), fDOM (599104) and chlorophyll-PC (599102) probes. Instrumentation: YSI EXO2 Multiparameter Sonde; YSI EXO turbidity sensor; YSI EXO total algae PC sensor; YSI EXO pH sensor; YSI EXO dissolved oxygen sensor; YSI EXO fDOm sensor; YSI EXO conductivity and temperature sensor; YSI EXO central wiper
DOI: 10.48443/f6gw-kk56
title: Field spectral data (DP1.30012.001)
title: RELEASE-2025

description: NEON AOP Field Spectral Data are collected using a field-spectrometer and leaf clip to observe leaf-level reflectance spectra within two-weeks of AOP overpass. Some field spectral observations will be collected from samples that are also used to develop the foliar chemistry data product. The Field Spectral Data are collected and distributed as an opportunistic activity and as such are not collected for every flight or site. Typical collection rates will be one or two sites annually.

Latency: Field spectral data will be available 90 days after the final collection day at a site. Field spectra legacy data (those collected in 2013 through 2016) currently has no availability, and will be completely available by April of 2021.
description: NEON AOP Field Spectral Data are collected using a field-spectrometer and leaf clip to observe leaf-level reflectance spectra within two-weeks of AOP overpass. Some field spectral observations will be collected from samples that are also used to develop the foliar chemistry data product. The Field Spectral Data are collected and distributed as an opportunistic activity and as such are not collected for every flight or site. Typical collection rates will be one or two sites annually. Instrumentation: ASD field spectrometer
DOI: 10.48443/qmka-7b32
title: Summary weather statistics (DP4.00001.001)
title: RELEASE-2025

description: The data products used for computing summary weather statistics represent fundamental meteorological parameters and are commonly monitored by many meteorological networks (e.g., USCRN, SCAN, etc.). Summaries of these meteorologic parameters are useful for understanding trends and changes in weather patterns.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: Summary weather statistics are be generated from Level 1 (L1) data products at NEON core sites. The L1 data products used to generate summary weather statistics are 2D wind speed (DP1.00001.001), Triple aspirated air temperature (DP1.00003.001), Barometric pressure (DP1.00004.001), Primary precipitation (DP1.00006.001) [ TEMPORARILY REMOVED. See issue log], Shortwave radiation (primary pyranometer) (DP1.00022.001), and Relative humidity (DP1.00098.001). The means, minima, maxima, variances, and standard errors of the mean are reported for the finest temporal resolution of each data product. For Primary precipitation, only precipitation totals are reported. Instrumentation:
DOI: 10.48443/tr5z-x822
title: Continuous discharge (DP4.00130.001)
title: RELEASE-2025

description: This data product describes the volume of water flowing through a stream or river cross-section during a given period of time. For each NEON stream or river site, site-specific stage-discharge rating curve equations are derived from point observations of gauge height and discharge. Continuous sensor measurements of surface water pressure are used to derive water column height. The rating curve equations are applied to water column height to derive continuous stream discharge.

Latency:
Data collected in any given month are published during the second full week of the following month.
description: NEON calculates continuous stream discharge in all rivers and wadeable stream sites within the Observatory. Stream discharge data are calculated using pressure of surface water L0 data (DP0.20016; the raw, level 0 inputs used to calculate Elevation of surface water, DP1.20016), stream discharge rating curve data (DP4.00133), gauge height data (DP1.20267.001) and geolocation information. Continuous discharge data are reported once per minute. Instrumentation: Level TROLL 500
DOI: 10.48443/a9ag-wn43
title: Bathymetric and morphological maps (DP4.00132.001)
title: RELEASE-2025

description: Bathymetric maps are obtained using hydroacoustic (sonar) instrumentation and interfaced with differential global positioning system (DGPS) mounted on a boat. Hydroacoustics are utilized to detect the depth of a water body, sediment characteristics as well as the presence or absence, approximate abundance, distribution, size, and behavior of underwater biota. For additional details, see the user guide, protocols, and science design listed in the Documentation section in this data product's details webpage.

Latency:
The expected time from data and/or sample collection in the field to data publication is as follows, for each of the data tables (in days) in the downloaded data package. See the Data Product User Guide for more information.
 
bat_fieldData: 60

bat_pointcollection: 60

bat_sonarRecord: 60

bat_processedSiteLevelSummary: 180

bat_processedSonarTrackData: 180

bat_processedVolumeData: 180

bat_processedHabitatResults: 180

bat_processedPlantCoverage: 180

bat_groundTruthPoints: 180
description: A dual beam echosounder with side scan sonar and WAAS GPS are used to collect bathymetric (depth) and backscatter (signal strength) data. These data are collected using a boat-mounted system applied during surveys of NEON lakes and river sites. Bathymetric surveys are completed every 5 years; if an extreme event results in substantial changes to the physical environment then an out-of-cycle survey may be conducted. Depth data are used to produce bathymetric maps and side scan sonar data are used to classify subaquatic features to produce a habitat map. Instrumentation: Humminbird 1198c Si Combo, Humminbird Helix 10 SI, Biosonics MX
DOI: 10.48443/yxgc-hz55
title: Stage-discharge rating curves (DP4.00133.001)
title: RELEASE-2025

description: This data product provides parameters that describe the relationship between manual staff gauge readings and manual and/or instumental discharge measurements for NEON stream, river, and lake inflow and outflow locations. The parameters provided are the coefficients defining an exponential curve and are derived from manually measured discharge (manually or via ADCP) and staff gauge readings by a Bayesian model. Rating curve parameters published in this product are used together with sensor measurements of surface water pressure to calculate the Continuous discharge (DP4.00130.001) data product. Data users should refer to the user guide for Stage-discharge rating curve (NEON\_ratingCurve\_userGuide) for more detailed information on the algorithm used to develop a rating curve.

Latency:
Data are generated once per year and are expected to be available each December following the end of the water year (October 1 - September 30).
description: Stage discharge rating curves (DP4.000133.001) are developed and evaluated annually for each location at the end of each water year (October 1 - September 30). Throughout the year, up to 26 staff gauge and stream discharge measurements are made at each NEON stream, river, and lake inflow and outflow location. Currently TOOK is the only lake site with a defined inflow and outflow location. The priors for the Bayesian model are derived from hydrologically relevant morphological information from the Stream morphology map (DP4.00131.001) data product at stream sites or Bathymetric and morphological maps (DP4.00132.001) data product at lake and river sites and NEON geolocation database information. The parameters generated from the stage discharge rating curve are used to calculate Continuous discharge (DP4.00130.001).  For additional details, see the user guide and science design listed in the Documentation section in this data product's details webpage. Instrumentation:
DOI: 10.15468/dl.7hv9uh
title: Occurrence Download

description: A dataset containing 33603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 33603 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003211-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.1594/pangaea.971430
title: Planktonic foraminifera from IODP Hole 344-U1381C

description: Sediment samples destined for the analysis of planktic assemblages were wet-sieved over a 63 μm fraction and then oven-dried. Planktonic foraminifera were identified and counted on the &gt;150 µm size fraction. Samples were not split unless they contain more than 200 planktonic foraminifera. he age model is calculated as indicated in doi:10.1594/PANGAEA.971417.
DOI: 10.1594/pangaea.971432
title: Major and minor elements from IODP Hole 344-U1381C

description: The sedimentary concentrations of major (Ca, Fe, Ti, Al, K) and minor (Mn, Ba, Sr) elements were measured by X-ray Fluorescence using Mo as the X-ray source on a spectrometer Siemens SRS 3000 at CACTI (University of Vigo). Major elements are expressed in percent, and minor elements in microgram per gram of dry weight sediment. The age model is calculated as indicated in doi:10.1594/PANGAEA.971417.
DOI: 10.15468/dl.ye3bjw
title: Occurrence Download

description: A dataset containing 453066 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Occurrence evidence, Human Observation)",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Balaenoptera musculus (Linnaeus, 1758), Megaptera novaeangliae (Borowski, 1781), Orcinus orca (Linnaeus, 1758), Physeter macrocephalus Linnaeus, 1758, Sotalia guianensis (P.-J.van Bénéden, 1864), Tursiops truncatus (Montagu, 1821))",
 "Year 2010-2025"
 ]
}

 The dataset includes 453066 records from 661 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003206-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aaptrx
title: Occurrence Download

description: A dataset containing 11923 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Martes martes (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 11923 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003213-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5chvv
title: Occurrence Download

description: A dataset containing 2703 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Agrilus planipennis Fairmaire, 1888"
 ]
}

 The dataset includes 2703 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003214-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8jzauz
title: Occurrence Download

description: A dataset containing 3717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mustela putorius Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 3717 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003215-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mtrjex
title: Occurrence Download

description: A dataset listing the 4020117 species recorded in GBIF matching the query:
{ }

 The dataset's 4020117 records were derived from 70694 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003200-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zcp4zz
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lynx lynx (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 155 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003216-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyvpug
title: Occurrence Download

description: A dataset containing 16174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rupicapra rupicapra (Linnaeus, 1758)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 16174 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003218-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syutvm
title: Occurrence Download

description: A dataset containing 4782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pipistrellus kuhlii (Kuhl, 1817)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2013",
 "Year is less than or equal to 2018",
 "CoordinateUncertaintyInMeters is less than or equal to 1000"
 ]
}

 The dataset includes 4782 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003219-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b297ws
title: Occurrence Download

description: A dataset containing 2778 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamogeton octandrus Poir."
 ]
}

 The dataset includes 2778 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013286-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.