cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13363389
title: Supplemental Data: Deciphering the biological contributors to methane cycling in Gulf Coast wetlands

description: File descriptions:

Supplemental_Tables



Table S1: experimental design. Number of samples from each wetland, ecosite and depth. Number of reads per sample. Other measurements available for each sample.

Table S2: porewater methane concentrations

Table S3: methane flux measurements

Tale S4: geochemistry measurements. Anions, cations, pH, salinity and depth

Table S5: 16S feature table with SILVA taxonomy

Table S6: feature table of methanogens and methanotrophs


 

Supplemental_Figures



Figure S1: Dissolved oxygen measured at the saltwater marsh

Figure S2: Redox potential of soils at each ecosite

Figure S3: Concentrations of anions and cations at each ecosite

Figure S4: Soil pH at each ecosite

Figure S5: Community composition at the Phylum level

Figure S6: Correlation matrix of methane cycling taxa and environmental variables

Figure S7: Linear discriminant analysis of methane cycling genera

Figure S8: Relative abundance of soil methanogen and methanotroph tax across sites, ecosites, and depths

Figure S9: Relative abundance of water column methanotroph taxa across sites, ecosites, and depths
DOI: 10.5281/zenodo.13363388
title: Supplemental Data: Deciphering the biological contributors to methane cycling in Gulf Coast wetlands

description: File descriptions:

Data



Table 1: experimental design. Number of samples from each wetland, ecosite and depth. Number of reads per sample. Other measurements available for each sample.

Tale 2: geochemistry measurements. Anions, cations, pH, salinity and depth

Table 3: 16S feature table with SILVA taxonomy

Table 4: feature table of methanogens and methanotrophs


Supplemental_Figures



Figure S1: Dissolved oxygen measured at the saltwater marsh

Figure S2: Redox potential of soils at each ecosite

Figure S3: Concentrations of anions and cations at each ecosite

Figure S4: Soil pH at each ecosite

Figure S5: Community composition at the Phylum level

Figure S6: Correlation matrix of methane cycling taxa and environmental variables

Figure S7: Linear discriminant analysis of methane cycling genera

Figure S8: Relative abundance of soil methanogen and methanotroph tax across sites, ecosites, and depths

Figure S9: Relative abundance of water column methanotroph taxa across sites, ecosites, and depths
DOI: 10.5281/zenodo.14941592
title: Supplemental Data: Deciphering the biological contributors to methane cycling in Gulf Coast wetlands

description: File descriptions:

Data



Table 1: experimental design. Number of samples from each wetland, ecosite and depth. Number of reads per sample. Other measurements available for each sample.

Tale 2: geochemistry measurements. Anions, cations, pH, salinity and depth

Table 3: 16S feature table with SILVA taxonomy

Table 4: feature table of methanogens and methanotrophs


Supplemental_Figures



Figure S1: Dissolved oxygen measured at the saltwater marsh

Figure S2: Redox potential of soils at each ecosite

Figure S3: Concentrations of anions and cations at each ecosite

Figure S4: Soil pH at each ecosite

Figure S5: Community composition at the Phylum level

Figure S6: Correlation matrix of methane cycling taxa and environmental variables

Figure S7: Linear discriminant analysis of methane cycling genera

Figure S8: Relative abundance of soil methanogen and methanotroph tax across sites, ecosites, and depths

Figure S9: Relative abundance of water column methanotroph taxa across sites, ecosites, and depths
DOI: 10.15468/dl.sae4zr
title: Occurrence Download

description: A dataset containing 3695 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Inia d'Orbigny, 1834"
 ]
}

 The dataset includes 3695 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000099-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.26302/sshade/experiment_lb_20191211_005
title: Fe K edge XAS absorbance of bulk CV carbonaceous chondrites

description: raw and normalized Fe K edge XAS absorbance of bulk CV carbonaceous chondrites
DOI: 10.15468/dl.h8z7jg
title: Occurrence Download

description: A dataset containing 4665987 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "HasCoordinate is true",
 "Year is 2018",
 "Month is August"
 ]
}

 The dataset includes 4665987 records from 468 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000096-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e672q9
title: Occurrence Download

description: A dataset containing 189 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (China, Mongolia)",
 "TaxonKey is Populus talassica Kom."
 ]
}

 The dataset includes 189 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005417-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28814828
title: Supporting information for PM-25-0734

description: This dataset includes the genomic and comparative genomic information.
DOI: 10.6084/m9.figshare.28814828.v3
title: Supporting information for PM-25-0734

description: This dataset includes the genomic and comparative genomic information.
DOI: 10.6084/m9.figshare.28814828.v2
title: Supporting information for cffced7c-da2f-42e9-b066-0f1190d5c825

description: This dataset includes the first chromosome-level genome assembly and annotation of the predatory stink bug <i>Eocanthecona furcellata</i>, generated using PacBio HiFi long-reads and Hi-C sequencing. It encompasses raw sequencing data, a high-quality genome assembly (1.065 Gb, 8 chromosomes), and comprehensive annotations of protein-coding genes (20,134), transposable elements (70.6% of the genome), and noncoding RNAs. Comparative genomic analyses with 12 other insect species (e.g., <i>Arma custos</i>, <i>Nezara viridula</i>)
DOI: 10.15468/dl.rhear8
title: Occurrence Download

description: A dataset containing 647 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hieracium piloselloides Wallr., 1822)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 647 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008558-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f9gy2v
title: Occurrence Download

description: A dataset containing 11848 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Teuchestes fossor (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11848 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008559-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xpj87
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hieracium praealtum Rchb.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 30 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008560-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c96dv
title: Occurrence Download

description: A dataset containing 36566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hieracium sabaudum L.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 36566 records from 423 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008491-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zz9tu8
title: Occurrence Download

description: A dataset containing 4992 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Nanophyes marmoratus (Goeze, 1777)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4992 records from 225 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008561-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qvr7z6
title: Occurrence Download

description: A dataset containing 846 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hippeastrum puniceum (Lam.) Voss)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 846 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008492-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psty3a
title: Occurrence Download

description: A dataset containing 519060 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 519060 records from 234 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008490-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5xk956
title: Occurrence Download

description: A dataset containing 2806 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Material sample)",
 "Geometry POLYGON((150.41477 -23.04848,150.37489 -23.16108,150.47237 -23.22256,150.585 -23.19134,150.56086 -23.04665,150.41477 -23.04848))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 2806 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008493-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.68gzjg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ethiopia",
 "OccurrenceStatus is Present",
 "TaxonKey is Cordia abyssinica R.Br."
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008563-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xmhm6u
title: Occurrence Download

description: A dataset containing 116 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hippeastrum striatum (Lam.) H.E.Moore)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1945"
 ]
}

 The dataset includes 116 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008564-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw9anv
title: Occurrence Download

description: A dataset containing 1638 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trichonotulus scrofa (Fabricius, 1787)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1638 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008494-250227182400228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbf8xm
title: Occurrence Download

description: A dataset containing 102968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Marrubium vulgare L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 102968 records from 672 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008557-250227182430271/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh1059488.10fu
title: SH1059488.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059489.10fu
title: SH1059489.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059491.10fu
title: SH1059491.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059495.10fu
title: SH1059495.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059497.10fu
title: SH1059497.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059498.10fu
title: SH1059498.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059499.10fu
title: SH1059499.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1059500.10fu
title: SH1059500.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.