cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5678323
title: Additional file 15: Table S8. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: GO analysis with HBV fusion transcripts in Mount Sinai cohort. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5678323.v1
title: Additional file 15: Table S8. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: GO analysis with HBV fusion transcripts in Mount Sinai cohort. (XLSX 65 kb)
DOI: 10.6084/m9.figshare.5678326
title: Additional file 6: Table S6. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

description: Original data for T3SS of C. gallinacea, including the locus-tags, and their annotation/putative function, length and direction. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5678326.v1
title: Additional file 6: Table S6. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

description: Original data for T3SS of C. gallinacea, including the locus-tags, and their annotation/putative function, length and direction. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.5678338
title: Additional file 16: Table S9. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of HBV fusion transcripts with cancer-related genes. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.5678338.v1
title: Additional file 16: Table S9. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of HBV fusion transcripts with cancer-related genes. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.5678344
title: Additional file 7: Table S7. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

description: List of the predicted transmembrane helices in the analyzed putative C. gallinacea inclusion (Inc) proteins from this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5678344.v1
title: Additional file 7: Table S7. of From genomes to genotypes: molecular epidemiological analysis of Chlamydia gallinacea reveals a high level of genetic diversity for this newly emerging chlamydial pathogen

description: List of the predicted transmembrane helices in the analyzed putative C. gallinacea inclusion (Inc) proteins from this study. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.5678374
title: Additional file 18: Table S10. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: HBV fusion transcript enrichment for tumor suppressor genes in different liver fibrosis and tumor recurrent status. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5678374.v1
title: Additional file 18: Table S10. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: HBV fusion transcript enrichment for tumor suppressor genes in different liver fibrosis and tumor recurrent status. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.5678392
title: Additional file 19: Table S11. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Association between pathogenic mutations and HBV integration host genes. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.5678392.v1
title: Additional file 19: Table S11. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Association between pathogenic mutations and HBV integration host genes. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.5678449
title: Additional file 21: Table S12. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Common pathogenic SNPs and somatic mutations among different datasets. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.5678449.v1
title: Additional file 21: Table S12. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Common pathogenic SNPs and somatic mutations among different datasets. (XLSX 47 kb)
DOI: 10.6084/m9.figshare.5678491
title: Additional file 23: Table S13. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Pathogenic somatic mutations biased in tumor recurrence group. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5678491.v1
title: Additional file 23: Table S13. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Pathogenic somatic mutations biased in tumor recurrence group. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.5678521
title: Additional file 2: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: Raw occurrence dataset for the 11 birds studied. (XLS 403Â kb)
DOI: 10.6084/m9.figshare.5678521.v1
title: Additional file 2: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: Raw occurrence dataset for the 11 birds studied. (XLS 403Â kb)
DOI: 10.6084/m9.figshare.5678527
title: Additional file 2: Table S1. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Clinical information of HBV-HCC samples in Mount Sinai, TCGA, and ICGC cohorts. (XLSX 403 kb)
DOI: 10.6084/m9.figshare.5678527.v1
title: Additional file 2: Table S1. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Clinical information of HBV-HCC samples in Mount Sinai, TCGA, and ICGC cohorts. (XLSX 403 kb)
DOI: 10.6084/m9.figshare.5678536
title: Additional file 3: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: Occurrence data after rarefaction for the 11 birds studied. (XLS 266Â kb)
DOI: 10.6084/m9.figshare.5678536.v1
title: Additional file 3: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: Occurrence data after rarefaction for the 11 birds studied. (XLS 266Â kb)
DOI: 10.6084/m9.figshare.5678545
title: Additional file 3: of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Supplementary materials and methods. (ZIP 1597 kb)
DOI: 10.6084/m9.figshare.5678545.v1
title: Additional file 3: of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Supplementary materials and methods. (ZIP 1597 kb)
DOI: 10.6084/m9.figshare.5678569
title: Additional file 4: Table S2. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of cirrhotic signatures with other liver cancer signatures in MSigDB. (XLSX 2020 kb)
DOI: 10.6084/m9.figshare.5678569.v1
title: Additional file 4: Table S2. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of cirrhotic signatures with other liver cancer signatures in MSigDB. (XLSX 2020 kb)
DOI: 10.6084/m9.figshare.5678599
title: Additional file 7: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: The raw sequence data generated in the study. (TXT 5410Â kb)
DOI: 10.6084/m9.figshare.5678599.v1
title: Additional file 7: of Ice age unfrozen: severe effect of the last interglacial, not glacial, climate change on East Asian avifauna

description: The raw sequence data generated in the study. (TXT 5410Â kb)
DOI: 10.6084/m9.figshare.5678605
title: Additional file 9: of Investigation on the differentiation of two Ustilago esculenta strains - implications of a relationship with the host phenotypes appearing in the fields

description: List of the non-synonymous mutations, 38 of the structural changed pathogenicity related genes and the number of statistical mutated genes in mutation types and functional types. Strains were isolated from the cultivar of Jiaobai called Longjiao 2#. Grinding method was used to isolate the strains, and all the colonies formed were mixed to do the sequencing. The sequencing results of the MT types isolated from white Jiaobai were deposited at GenBank under accession JTLW00000000 and the GenBank accession of sequencing data of the T types isolated from grey Jiaobai was SRR5889164. All the non-synonymous mutations were compared between T and MT types, the results listed in Sheet 1. Also, 38 of the structural changed pathogenicity related genes were found out and listed in Sheet 2. These 38 genes were PCR confirmed from 6 cultivars of Jiaobai in Zhejiang Province (Longjiao 2#, Zhejiao 2#, Zhejiao 6#, Suozjiao, 911, Yujiao 3#). The number of statistical mutated genes in mutation types and functional types in MT types were listed in Sheet 3. (XLSX 1616Â kb)
DOI: 10.6084/m9.figshare.5678605.v1
title: Additional file 9: of Investigation on the differentiation of two Ustilago esculenta strains - implications of a relationship with the host phenotypes appearing in the fields

description: List of the non-synonymous mutations, 38 of the structural changed pathogenicity related genes and the number of statistical mutated genes in mutation types and functional types. Strains were isolated from the cultivar of Jiaobai called Longjiao 2#. Grinding method was used to isolate the strains, and all the colonies formed were mixed to do the sequencing. The sequencing results of the MT types isolated from white Jiaobai were deposited at GenBank under accession JTLW00000000 and the GenBank accession of sequencing data of the T types isolated from grey Jiaobai was SRR5889164. All the non-synonymous mutations were compared between T and MT types, the results listed in Sheet 1. Also, 38 of the structural changed pathogenicity related genes were found out and listed in Sheet 2. These 38 genes were PCR confirmed from 6 cultivars of Jiaobai in Zhejiang Province (Longjiao 2#, Zhejiao 2#, Zhejiao 6#, Suozjiao, 911, Yujiao 3#). The number of statistical mutated genes in mutation types and functional types in MT types were listed in Sheet 3. (XLSX 1616Â kb)
DOI: 10.6084/m9.figshare.5678614
title: Additional file 7: Table S3. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Summary of number of HBV integration sites in BGI samples. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5678614.v1
title: Additional file 7: Table S3. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Summary of number of HBV integration sites in BGI samples. (XLSX 45 kb)
DOI: 10.6084/m9.figshare.5678620
title: Additional file 8: Table S4. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of HBV integration sites reported by Sinai and TCGA. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5678620.v1
title: Additional file 8: Table S4. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: Comparison of HBV integration sites reported by Sinai and TCGA. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.5678626
title: Additional file 9: Table S5. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: HBV integration sites identified in Mount Sinai cohort. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.5678626.v1
title: Additional file 9: Table S5. of A pilot systematic genomic comparison of recurrence risks of hepatitis B virus-associated hepatocellular carcinoma with low- and high-degree liver fibrosis

description: HBV integration sites identified in Mount Sinai cohort. (XLSX 64 kb)
DOI: 10.6084/m9.figshare.5678773
title: Table S3. Zircon Lu–Hf isotopic data for the sandstones. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S3. Zircon Lu–Hf isotopic data for the sandstones.
DOI: 10.6084/m9.figshare.5678773.v1
title: Table S3. Zircon Lu–Hf isotopic data for the sandstones. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S3. Zircon Lu–Hf isotopic data for the sandstones.
DOI: 10.6084/m9.figshare.5678776
title: Table S1. Major oxides (%) and minor elements (ppm) of the clastic rocks. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S1. Major oxides (%) and minor elements (ppm) of the clastic rocks.
DOI: 10.6084/m9.figshare.5678776.v1
title: Table S1. Major oxides (%) and minor elements (ppm) of the clastic rocks. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S1. Major oxides (%) and minor elements (ppm) of the clastic rocks.
DOI: 10.6084/m9.figshare.5678779
title: Table S2. Zircon U–Pb isotopic data. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S2. Zircon U–Pb isotopic data by LA-ICP-MS for the sandstones.
DOI: 10.6084/m9.figshare.5678779.v1
title: Table S2. Zircon U–Pb isotopic data. Geochemistry and zircon U–Pb–Hf isotopic data for Permo-Carboniferous sediments in the Solonker Zone, Inner Mongolia, China: constraints on depositional age, provenance and tectonic setting

description: Table S2. Zircon U–Pb isotopic data by LA-ICP-MS for the sandstones.
DOI: 10.6084/m9.figshare.5683045
title: Additional file 2: of Body mass index had different effects on premenopausal and postmenopausal breast cancer risks: a dose-response meta-analysis with 3,318,796 subjects from 31 cohort studies

description: The related data and materials in this study. (ZIP 1785Â kb)
DOI: 10.6084/m9.figshare.5683045.v1
title: Additional file 2: of Body mass index had different effects on premenopausal and postmenopausal breast cancer risks: a dose-response meta-analysis with 3,318,796 subjects from 31 cohort studies

description: The related data and materials in this study. (ZIP 1785Â kb)
DOI: 10.5517/ccdc.csd.cc26zbg0
title: CCDC 2054942: Experimental Crystal Structure Determination

description: Related Article: Yangyang Weng|2021|CSD Communication|||
description: Related Article: Yangyang Weng, Yetong Zhang, Aneta Turlik, Xianqing Wu, Haiyan Li, Fan Fei, Yongkang Yao, Chenglong Wang, Zhiqian Guo, Jingping Qu, K. N. Houk, Yifeng Chen|2023|Nat. Synth.|2|261|doi:10.1038/s44160-022-00208-z
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.21769493
title: Microsatellite and SNP datasets of the Critically Endangered Swift Parrot (Lathamus discolor)

description: GenAlEx data file of 3761 SNPs for 781 individuals of Swift Parrot <i>Lathamus discolor</i>.The SNP data file follows the structure of GenAlEx input file. Columns indicate:SNP_ID: individual ID of the specimens genotyped in this project, based on SNPsmicrosat_ID: individual ID of the specimens genotyped in a previous project (Olah <i>et al.</i>, 2021), based on microsatellitesmicrosat_YN: whether the sample was genotyped based on the microsatellite study (Olah <i>et al.</i>, 2021)Lat: latitude of the sample locationLong: longitude of the sample locationPop: <i>a priori</i> assigned population nameage: whether the sample is from adult or chickyear: sampling yearsex: whether the individual is male (M) or female (F)The microsatellite data file follows the structure of GenAlEx input file. Columns indicate:Pop: <i>a priori</i> assigned population nameUTM Easting of the sample locationUTM Northing of the sample locationSNP_ID: individual ID of the specimens genotyped in this project, based on SNPsmicrosat_ID: individual ID of the specimens genotyped in a previous project (Olah <i>et al.</i>, 2021), based on microsatellitesSeason: sampling seasonDate Samples: exact date when the sample was collectedAge: whether the sample is from adult or chick
DOI: 10.6084/m9.figshare.25467826
title: RDE-Dataset.zipRansomware Defense Empowered: Deep Learning for Real-Time Family Identification with a Proprietary Dataset

description: Ransomware, leveraging sophisticated encryption techniques, poses a significant threat by encrypting crucial data, thereby rendering it inaccessible. The proliferation of diverse ransomware variants has caused considerable harm to governments, corporations, and individual users alike. Despite the increasing prevalence of cyber threats, existing solutions often struggle with real-time detection and early identification of ransomware families. To address this challenge, we introduce FCG-RFD, a novel benchmark dataset featuring extensive Function Call Graphs (FCG) tailored for ransomware family detection. Given the constantly evolving nature of malware, antivirus scanners face ongoing challenges, necessitating access to recent and updated datasets. Our dataset comprises 8,095 samples sourced from reputable repositories including VirusSamples, Virusshare, VirusSign, the Zoo, and MalwareBazaar. Additionally, we include 8,020 normal files obtained from trusted sources such as the Microsoft Store and Softonic. Through FCG-RFD, we aim to facilitate more robust and timely detection of ransomware families, ultimately enhancing cybersecurity measures against this pervasive threat.
DOI: 10.5281/zenodo.10848425
title: Dutch landscapes have lost insect-pollinated plants over the past 87 years

description: Data associated with the publication "Dutch landscapes have lost insect-pollinated plants over the past 87 years".

Abstract:

1. The interruption of plant-pollinator interactions may threaten global plant diversity, food security, and ecosystem stability. Recent reports of strong declines in both insects and plants point to insect decline as a driver of plant decline. However, it is still unknown whether these trends are related as plants often produce seeds without the need for insect pollinators, and to what extent insect-pollinated plants have declined in relation to plants not pollinated by insects. 

2. In this study, we hypothesise that natural plant communities have shifted away from insect-pollination. We combined 365,768 vegetation plots from 1930 to 2017 in the Netherlands and plant traits to assess the changes in occurrences of plants pollinated by different modes. Furthermore, we included key drivers in plant decline—specifically nitrogen, moisture, and habitat types—as interaction factors to explore the persistence of the observed changes under different environmental conditions.

3. The proportion of insect-pollinated plants has declined while that of wind-pollinated plants has increased over the last 87 years. This proportional change reflects an absolute decrease in the number of insect-pollinated species and an increase in the number of wind-pollinated species. 

4. Synthesis and applications. This study implies that Dutch landscapes are losing insect-pollinated plant species, which is likely due, at least in part, to the decline in pollination services. Our results of quantifying the decline in insect-pollinated plants support the necessity and urgency of taking conservation initiatives. Several management strategies and policy recommendations could be applied to alleviate the decline of insect-pollinated plants and ensure crop safety. For example, conserving natural environments by reducing nitrogen deposition may support local plants and insect pollinators. Additionally, there is a particular need for focused efforts to protect natural grasslands, as these areas harbor many insect-pollinated plants, which have experienced declines. Finally, monitoring and assessing the state of both pollinators and (insect-pollinated) plants is needed to assess the progress of conservation measures. While recognizing the interdependence of pollinators and pollinated plants, it is crucial to extend efforts beyond pollinator conservation alone to effectively safeguard insect-pollinated plants and ensure crop safety.