cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14955055
title: Survey of gene, lncRNA and transposon transcription patterns in four mouse organs highlights shared and organ-specific sex-biased regulation

description: This collection contains processed files from the manuscript Survey of gene, lncRNA and transposon transcription patterns in four mouse organs highlights shared and organ-specific sex-biased regulation. Briefly, each of the four zipped files contains bigwig track files (.bw files, separate for forward and reverse strands) in respective organs. In addition, bed files are provided for sex-biased signals (e.g. sDETE, sDEG, and slncRNA et. al.). ABSTRACT

Background

Sex-biased gene regulation is the basis of sexual dimorphism in phenotypes and has been studied across different cell types and different developmental stages. However, sex-biased expression of transposable elements (TEs), which represent nearly half of the mammalian genome and have the potential of influencing genome integrity and regulation, remains underexplored.

Results

We report a survey of gene, lncRNA and TE expression in four organs from mice with different combinations of gonadal and genetic sex. The data show remarkable variability among organs with respect to the impact of gonadal sex on transcription with the strongest effects observed in liver. In contrast, the X-chromosome dosage alone had modest influence on sex-biased transcription across organs, albeit interaction between X-dosage and gonadal sex cannot be ruled out. The presence of the Y-chromosome influences TE, but not gene or lncRNA, expression in liver. Notably, 90% of sex-biased TEs (sDETEs) reside in clusters. Moreover, 54% of these clusters overlap or reside less than 100 kb from sex-biased genes or lncRNAs, share the same sex bias, and also have higher expression levels than sDETE clusters that do not co-localize with other types of sex-biased transcripts. We test the heterochromatic sink hypothesis that predicts higher expression of TEs in XX individuals finding no evidence to support it.

Conclusions

Our data show that sex-biased expression of TEs varies among organs with highest numbers of sDETEs found in liver following trends observed for genes and lncRNAs. It is enhanced by proximity to other types of sex-biased transcripts.
DOI: 10.5281/zenodo.14969241
title: Replication Code and Data for "Reconsidering the Macroeconomic Impact of Severe Warming"

description: This repository contains code and data to replicate the figures and tables of "Reconsidering the Macroeconomic Impact of Severe Warming" by Timothy Neal, Andy Pitman, and Ben Newell in Environmental Research Letters.DOI of article: 10.1088/1748-9326/adbd58
DOI: 10.5285/b79e887e-a2a7-4224-8fd7-e78066b950b3
title: Land Cover Map 2000 (vector, GB)

description: This dataset consists of the vector version of the Land Cover Map 2000 for Great Britain, containing individual parcels of land cover (the highest available resolution). Level 2 & Level 3 attributes are available. Level 2, the standard level of detail, provides 26 LCM2000 target or ('sub') classes. This is the most widely used version of the dataset. Level 3 gives higher class detail. However, the quality of this level of detail may vary in different areas of the country, requiring expert interpretation. The dataset is part of a series of data products produced by the Centre for Ecology & Hydrology known as LCM2000. LCM2000 is a parcel-based thematic classification of satellite image data covering the entire United Kingdom. The map updates and upgrades the Land Cover Map of Great Britain (LCMGB) 1990. Like the earlier 1990 products, LCM2000 is derived from a computer classification of satellite scenes obtained mainly from Landsat, IRS and SPOT sensors and also incorporates information derived from other ancillary datasets. LCM2000 was classified using a nomenclature corresponding to the Joint Nature Conservation Committee (JNCC) Broad Habitats, which encompasses the entire range of UK habitats. In addition, it recorded further detail where possible. The series of LCM2000 products includes vector and raster formats, with a number of different versions containing varying levels of detail and at different spatial resolutions.
description: In a major development of earlier methods, LCM2000 used image segmentation to identify land parcels in the pixel-based images. An automated procedure grouped the image pixels into spectrally 'uniform' segments. These were built around 'seedpoints' selected to avoid parcel boundaries. The segmentation recorded a field-by-field pattern, also separating land use zones within urban and suburban areas, and subdividing mosaics of semi-natural vegetation. Generalisation gave minimum mappable units of a half hectare. A 'vector' version was then created in the geographical information system (GIS), where the boundaries between the pixel-based segments were represented by digital linework. The resultant land parcels were treated as GIS objects to which attribute data could then be attached covering such topics as land cover class, parcel area, length of boundary, processing history, knowledge-based correction and identification of the original satellite scene. The raster products have been derived from the vector dataset. LCM2000 was produced at CEH Monks Wood. For further information on the methodology developed and used to create Land Cover Map 2000, see on-line supporting documentation.
DOI: 10.5517/ccdc.csd.cc2321qz
title: CCDC 1938390: Experimental Crystal Structure Determination

description: Related Article: Liu Kaikai|2019|CSD Communication|||
DOI: 10.5517/cczrpky
title: CCDC 916501: Experimental Crystal Structure Determination

description: Related Article: J.Wagler|2012|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/havt50xw
title: HOSTS - a Database of the World's Lepidopteran Hostplants

description: __Please note: HOSTS will not be further updated or amended. This dataset is an archival resource and has been made available in full for those who wish to re-use and build on the data, not as an ongoing project.__ Records of caterpillar hostplants are scattered through published and manuscript sources worldwide and are difficult to retrieve. Many rearing records are never published and so are not accessible to other entomologists. But collected hostplant records form a valuable scientific resource that can be used eventually to answer broader biological questions about how Lepidoptera and plants interact (eg, Letourneau, Hagen & Robinson, 2001). It provides information of immediate relevance to agriculture, ecology, forestry, conservation and taxonomy. HOSTS brings together an enormous body of information on what the world's butterfly and moth (Lepidoptera) caterpillars eat. The web-based version presented here offers a synoptic data set drawn from about 180,000 records comprising taxonomically 'cleaned' hostplant data for about 22,000 Lepidoptera species drawn from about 1600 published and manuscript sources. We hope that it will be useful to a wide range of biologists and that it will act as a spur to further recording and analysis of caterpillar-plant interactions.
DOI: 10.6073/pasta/04030c61782378dd44abb005b29ea5d3
title: North Temperate Lakes LTER: Zooplankton - Trout Lake Area 1982 - current

description: Zooplankton samples are collected from the seven primary northern lakes (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) at two to nine depths using a 2m long Schindler Patalas trap (53um mesh) and with vertical tows using a Wisconsin net (20cm diameter, 80um mesh). Zooplankton samples are preserved in buffered formalin (until 2001) or 95% ethanol (2001 onwards). Subsamples of the individual Schindler trap samples are combined to create a hypsometrically pooled sample which is counted for copepods, cladocerans, and rotifers. Data are summed over sex and stage to provide a lake-wide estimate of organisms per liter for each species. A minimum of 5 samples per lake-year are counted. The data set also contains length measurements for copepods and cladocerans. The Wisconsin net sample and the pooled sample are archived in the UW Zoology museum. Each year one complete set of Schindler Patalas depth samples collected in August is also archived. From 1981 to August 1986 - used a 0.5m high Schindler Patalas trap. Sampling Frequency: every two weeks during ice-free season, every 5 weeks during ice-cover. Number of sites: 7
DOI: 10.6073/pasta/a03b42039e6db8c45a9bb9e480a2ba6a
title: North Temperate Lakes LTER: Zooplankton - Madison Lakes Area 1997 - current

description: Zooplankton samples for the 4 southern Wisconsin LTER lakes (Mendota, Monona, Wingra, Fish) have been collected for analysis by LTER since 1995 (1996 Wingra, Fish) when the southern Wisconsin lakes were added to the North Temperate Lakes LTER project. Samples are collected as a vertical tow using an 80-micron mesh conical net with a 30-cm diameter opening (net mouth: net length ratio = 1:3) consistent with sampling conducted by the Wisconsin Dept. Natural Resources in prior years. Zooplankton tows are taken in the deep hole region of each lake at the same time and location as other limnological sampling; zooplankton samples are preserved in 70% ethanol for later processing. Samples are usually collected with standard tow depths on most dates (e.g., 20 meters for Lake Mendota) but not always, so tow depth is recorded as a variate in the database. Crustacean species are identified and counted for Mendota and Monona and body lengths are recorded for a portion of each species identified (see data protocol for counting procedure); samples for Wingra and Fish lakes are archived but not routinely counted. Numerical densities for Mendota and Monona zooplankton samples are reported in the database as number or organisms per square meter without correcting for net efficiency. [Net efficiency varies from a maximum of about 70% under clear water conditions; net efficiency declines when algal blooms are dense (Lathrop, R.C. 1998. Water clarity responses to phosphorus and Daphnia in Lake Mendota. Ph.D. Thesis, University of Wisconsin-Madison.)] Organism densities in number per cubic meter can be obtained by dividing the reported square-meter density by the tow depth, although adjustments for the oxygenated depth zone during the summer and early fall stratified season is required to obtain realistic zooplankton volumetric densities in the lake's surface waters. Biomass densities can be calculated using literature formulas for converting organism body lengths reported in the database to body masses. Sampling Frequency: bi-weekly during ice-free season from late March or early April through early September, then every 4 weeks through late November; sampling is conducted usually once during the winter (depending on ice conditions). Number of sites: 4 Note: for a period between approximately 2011 and 2015, a calculation error caused density values to be significantly greater than they should have been for the entire dataset. That issue has been corrected.
DOI: 10.6073/pasta/e876543ebe841bf7608f800a6cfb357e
title: North Temperate Lakes LTER: Phytoplankton - Trout Lake Area 1984 - 2006

description: Phytoplankton samples from the seven northern Wisconsin LTER lakes in the Trout Lake area (Allequash, Big Muskellunge, Crystal, Sparkling, and Trout lakes and bog lakes 27-02 [Crystal Bog], and 12-15 [Trout Bog]) are collected six times per year at the deep hole sampling station at the same time as our other limnological sampling is conducted. We use a peristaltic pump and tubing, collecting a separate sample from the epilimnion, metalimnion and hypolimnion for most of the lakes. For 27-2 Bog Lake, which is only 2m deep, we collect one 0-2m composite sample. The samples are preserved with Lugols iodine solution. We create a single hypsometrically pooled composite sample per lake from subsamples of the strata samples. The pooled samples are sent to PhycoTech, Inc., a private lab specializing in phytoplankton analysis, to be made into permanent slide mounts. The slide mounts, 3 slides per sample, are archived at the University of Wisconsin - Madison Zoology Museum Phytoplankton are identified to species using an inverted microscope (Utermohl technique) and are reported as natural unit (i.e., colonies, filaments, or single cells) densities per mL, cell densities per mL, and algal biovolume densities per mL. Multiple entries for the same species on the same date may be due to different variants or vegetative states - (e.g., colonial or attached vs. free cell.) Biovolumes for individual cells of each species are determined during the counting procedure by obtaining cell measurements needed to calculate volumes for geometric solids (e.g., cylinders, spheres, truncated cones) corresponding to actual cell shapes. Biovolume concentrations are then computed by mulitplying the average cell biovolume by the cell densities in the water sample. Note that one million cubicMicrometers of biovolume PerMilliliter of water are equal to a biovolume concentration of one cubicMillimeterPerMilliliter. Assuming a cell density equal to water, a cubicMillimeterPerMilliliter of biovolume converts to a biomass concentration of one milligramPerLiter. Sampling Frequency: 6 samples per year Number of sites: 7
DOI: 10.6084/m9.figshare.25237654
title: data and computer codes for "Hyperbolic phonon-polariton electroluminescence in 2D heterostructures"

description: Phonon-polaritons are electromagnetic waves resulting from the coherent coupling of photons with<br>optical phonons in polar dielectrics. Due to their exceptional ability to confine electric fields to deep<br>subwavelength scales with low loss, they are uniquely poised to enable a suite of applications beyond<br>the reach of conventional photonics, such as sub-diffraction imaging and near-field energy transfer.<br>The conventional approach to exciting phonon-polaritons through optical methods, however, in-<br>volves costly mid-infrared and terahertz coherent light sources along with near-field scanning probes,<br>and generally leads to low excitation efficiency due to substantial momentum mismatch between<br>phonon-polaritons and free-space photons. Here, we demonstrate that under proper conditions,<br>phonon-polaritons can be excited all-electrically by velocity-saturated charge carriers. Specifically,<br>in hexagonal boron nitride (hBN)/graphene heterostructures, by electrically driving charge carriers<br>in ultra-high-mobility graphene out of equilibrium, we observe bright electroluminescence of hBN’s<br>hyperbolic phonon-polaritons (HPhPs) at mid-IR frequencies. The HPhP electroluminescence shows<br>a temperature and carrier density dependence distinct from black-body or super-Planckian thermal<br>emission. Moreover, the carrier density dependence of HPhP electroluminescence spectra reveals<br>that HPhP electroluminescence can arise from both inter-band transition and intra-band Cherenkov<br>radiation of charge carriers in graphene. The HPhP electroluminescence offers fundamentally new<br>avenues for realizing electrically-pumped, tunable mid-IR and THz phonon-polariton light sources,<br>and efficient cooling of electronic devices.
DOI: 10.21410/7e4/fl3opk/9uveen
title: fr_cdsp_ddi_enef2019_v21_sas_2.7z

description: :unav
DOI: 10.21410/7e4/fl3opk/puiadh
title: Questionnaire_ENEF2019_Vague 21.pdf

description: :unav
DOI: 10.21410/7e4/fl3opk/riglhc
title: fr_cdsp_ddi_enef2019_v21.tab

description: :unav
DOI: 10.21410/7e4/fl3opk/wmqmds
title: fr_cdsp_ddi_enef2019_v21_csv_2.7z

description: :unav
DOI: 10.21410/7e4/fl3opk/wpgqxf
title: fr_cdsp_ddi_enef2019_v21-1.tab

description: :unav
DOI: 10.21410/7e4/fl3opk/xuv73x
title: ENEF2019_Dictionnaire_variable_2.7z

description: :unav
DOI: 10.21410/7e4/fl3opk/y9d1d0
title: Documentation_ENEF2019_V21.pdf

description: :unav
DOI: 10.21410/7e4/fl3opk
title: Enquête électorale française 2019 (ENEF 2019), Vague 21

description: Ce dispositif de suivi et de mesure de l’opinion permet l’analyse des évolutions de l’électorat français et de ses réactions aux événements politiques, sociaux et économiques à travers 5 vagues, entre la veille des élections européennes de 2019 et celle des élections municipales de 2020. Il fournit une série d’indicateurs et de mesures sur les tendances de l’électorat français, ses valeurs politiques, ses préférences partisanes et son rapport à l'Union européenne. L'enquête détaille les ressorts psychologiques de la décision électorale à la lumière des valeurs des Français et des contextes politiques, géographiques et socio-économiques. Elle permet également des analyses détaillées sur les opinions des français envers Emmanuel Macron ainsi que les Gilets Jaunes et le Grand débat national de janvier 2019. L'enquête est en continuum de l'Enquête électorale française 2017 qui a repris une partie de ses enquêtés. Cette vingt et unième vague a été réalisée en avril 2019, avant les élections européennes de mai 2019 ; 9919 personnes inscrites sur les listes électorales y ont participé.
DOI: 10.21410/7e4/fl3opk/t9nwcb
title: fr_cdsp_ddi_enef2019_v21.xml

description: :unav
DOI: 10.5281/zenodo.15089502
title: Dataset: Simplified bacterial denitrification method using Stenotrophomonas nitritireducens for nitrite dual isotope analysis in low-concentration environmental samples
DOI: 10.5281/zenodo.15089503
title: Dataset: Simplified bacterial denitrification method using Stenotrophomonas nitritireducens for nitrite dual isotope analysis in low-concentration environmental samples
DOI: 10.4121/1e2af139-9d2f-4098-91ce-491d3b39b635
title: Data underlying the article Basil Chilling Injury: Oxidative Stress or Energy Depletion

description: Basil (Oscimum basilicum L.) is susceptible to chilling injury (CI), leading to significant postharvest quality loss. This research aimed to identify key metabolites involved in CI of basil during cold storage to better understand the underlying mechanisms. Metabolite profiles of basil (cv. Dolly) leaves stored at 4 and 12 °C for up to 12 days were quantified by 1H NMR and GC-MS. The overall visual quality (OVQ) of basil leaves were scored and the maximum quantum yield of photosystem II (Fv/Fm) were measured to represent chilling damage at- and postharvest.Two storage temperature: 4 and 12 °CPostharvest storage time: 0, 3, 6, 9, and 12 days
DOI: 10.4121/1e2af139-9d2f-4098-91ce-491d3b39b635.v1
title: Data underlying the article Basil Chilling Injury: Oxidative Stress or Energy Depletion

description: Basil (Oscimum basilicum L.) is susceptible to chilling injury (CI), leading to significant postharvest quality loss. This research aimed to identify key metabolites involved in CI of basil during cold storage to better understand the underlying mechanisms. Metabolite profiles of basil (cv. Dolly) leaves stored at 4 and 12 °C for up to 12 days were quantified by 1H NMR and GC-MS. The overall visual quality (OVQ) of basil leaves were scored and the maximum quantum yield of photosystem II (Fv/Fm) were measured to represent chilling damage at- and postharvest.Two storage temperature: 4 and 12 °CPostharvest storage time: 0, 3, 6, 9, and 12 days
DOI: 10.4121/1e2af139-9d2f-4098-91ce-491d3b39b635.v2
title: Data underlying the article Basil Chilling Injury: Oxidative Stress or Energy Depletion

description: Basil (Oscimum basilicum L.) is susceptible to chilling injury (CI), leading to significant postharvest quality loss. This research aimed to identify key metabolites involved in CI of basil during cold storage to better understand the underlying mechanisms. Metabolite profiles of basil (cv. Dolly) leaves stored at 4 and 12 °C for up to 12 days were quantified by 1H NMR and GC-MS. The overall visual quality (OVQ) of basil leaves were scored and the maximum quantum yield of photosystem II (Fv/Fm) were measured to represent chilling damage at- and postharvest.Two storage temperature: 4 and 12 °CPostharvest storage time: 0, 3, 6, 9, and 12 days
DOI: 10.5281/zenodo.15076760
title: Dataset: Enhanced isotopic approach combined with microbiological analyses for more precise distinction of various N transformation processes in contaminated aquifer – a groundwater incubation study
DOI: 10.5281/zenodo.15076761
title: Dataset: Enhanced isotopic approach combined with microbiological analyses for more precise distinction of various N transformation processes in contaminated aquifer – a groundwater incubation study
DOI: 10.71795/dxjz-ef35
title: FISH Maritime Place Names
DOI: 10.5281/zenodo.15129901
title: Audit reports from the CGU website

description: This dataset contains the raw text of audit reports originally published on the website of the Controladoria-Geral da União (CGU). The data was scraped in 2020 using the script scrape_pdfs.py as part of the research for the paper "A Machine Learning Approach to Analyze and Support Anti-Corruption Policy", published in the American Economic Journal: Economic Policy.  Since then, the structure of the CGU website has changed and the scraper is no longer functional. However, all reports remain publicly accessible and can be manually retrieved from the CGU website.
DOI: 10.5281/zenodo.15129902
title: Audit reports from the CGU website

description: This dataset contains the raw text of audit reports originally published on the website of the Controladoria-Geral da União (CGU). The data was scraped in 2020 using the script scrape_pdfs.py as part of the research for the paper "A Machine Learning Approach to Analyze and Support Anti-Corruption Policy", published in the American Economic Journal: Economic Policy.  Since then, the structure of the CGU website has changed and the scraper is no longer functional. However, all reports remain publicly accessible and can be manually retrieved from the CGU website.
DOI: 10.21410/7e4/ao9rp9
title: Enquête électorale française 2019 (ENEF 2019), Vague 22

description: Ce dispositif de suivi et de mesure de l’opinion permet l’analyse des évolutions de l’électorat français et de ses réactions aux événements politiques, sociaux et économiques à travers 5 vagues, entre la veille des élections européennes de 2019 et celle des élections municipales de 2020. Il fournit une série d’indicateurs et de mesures sur les tendances de l’électorat français, ses valeurs politiques, ses préférences partisanes et son rapport à l'Union européenne. L'enquête détaille les ressorts psychologiques de la décision électorale à la lumière des valeurs des Français et des contextes politiques, géographiques et socio-économiques. Elle permet également des analyses détaillées sur les opinions des français envers Emmanuel Macron ainsi que les Gilets Jaunes et le Grand débat national de janvier 2019. L'enquête est en continuum de l'Enquête électorale française 2017 qui a repris une partie de ses enquêtés. Cette vingt-deuxième vague a été réalisée en mai 2019, avant les élections européennes de mai 2019 ; 10 606 personnes inscrites sur les listes électorales y ont participé.
DOI: 10.21410/7e4/ao9rp9/7i2xxq
title: ENEF2019_Dictionnaire_variable_2.7z

description: :unav
DOI: 10.21410/7e4/ao9rp9/cvsq0l
title: Documentation_ENEF2019_V22.pdf

description: :unav
DOI: 10.21410/7e4/ao9rp9/do9eju
title: fr_cdsp_ddi_enef2019_v22.xml

description: :unav
DOI: 10.21410/7e4/ao9rp9/iq7grb
title: fr_cdsp_ddi_enef2019_v22_csv_2.7z

description: :unav
DOI: 10.21410/7e4/ao9rp9/k0rbld
title: fr_cdsp_ddi_enef2019_v22.tab

description: :unav
DOI: 10.21410/7e4/ao9rp9/kp4kun
title: fr_cdsp_ddi_enef2019_v22-1.tab

description: :unav
DOI: 10.21410/7e4/ao9rp9/mz04xf
title: fr_cdsp_ddi_enef2019_v22_sas_2.7z

description: :unav
DOI: 10.21410/7e4/ao9rp9/tkjgla
title: Questionnaire_ENEF2019_Vague 22.pdf

description: :unav