cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26188/24329116.v1
title: Sminthopsis_crassicaudata_1.gtf

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (\textit{Sminthopsis crassicaudata}), a mouse-like marsupial that, due to its ease of husbandry and \textit{ex-utero} development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue \textit{de novo} transcriptome assembly of dunnart RNA-seq reads spanning [\hl{15?}] tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93\% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and \textit{ab initio} predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24329119.v1
title: Dunnart_asm_12-2021_sm.fa

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24329122
title: Dunnart_trinity_k29_output.Trinity.fasta

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.26188/24329122.v1
title: Dunnart_trinity_k29_output.Trinity.fasta

description: Marsupials exhibit highly specialized patterns of reproduction and development, making them uniquely valuable for comparative genomics studies with their sister lineage, eutherian (also known as placental) mammals. However, marsupial genomic resources still lag far behind those of eutherian mammals, limiting our insight into mammalian diversity. Here, we present a series of novel genomic resources for the fat-tailed dunnart (<em>Sminthopsis crassicaudata</em>), a mouse-like marsupial that, due to its ease of husbandry and <em>ex-utero</em> development, is emerging as a laboratory model. To enable wider use, we have generated a multi-tissue <em>de novo</em> transcriptome assembly of dunnart RNA-seq reads spanning 15 tissues. This highly representative transcriptome is comprised of 2,093,982 assembled transcripts, with a mean transcript length of 830 bp. The transcriptome mammalian BUSCO completeness score of 93% is the highest amongst all other published marsupial transcriptomes. Additionally, we report an improved fat-tailed dunnart genome assembly which is 3.23 Gb long, organized into 1,848 scaffolds, with a scaffold N50 of 72.64 Mb. The genome annotation, supported by assembled transcripts and <em>ab initio</em> predictions, revealed 21,622 protein-coding genes. Altogether, these resources will contribute greatly towards characterizing marsupial biology and mammalian genome evolution.
DOI: 10.6084/m9.figshare.24460114.v4
title: lunar_surface_chemistry_maps

description: The data files depict the abundances of SiO2, TiO2 and MgO observed by the KAGUYA multiband imager and TiO2, FeO and Al2O3 of the young mare basalts unit. The data files are in the format of .tif and can be opend by the software ArcGIS.
DOI: 10.25493/gfr5-m3t
title: 3D cytoarchitectonic map of the human CGM (Metathalamus) of the BigBrain (v2.1)

description: This dataset contains cytoarchitectonic maps of the CGM (Metathalamus) of the BigBrain cortex and subcortical structures. The maps are based on reference delineations in serial histological sections of the BigBrain at 1 micron resolution in-plane, with a distance of sections typically not lower than 300 micrometres. The 3D cytoarchitectonic maps were created in two different approaches: (1) As first version, a 3D map of the area was created by simple interpolation of the respective reference delineations. (2) As second version, a 3D map was created using deep convolutional neural networks trained on the respective reference delineations. As a result, the latter version also includes delineations of the area in the sections in-between reference delineations. The 3D maps were transformed to the 3D reconstructed BigBrain space and are integrated into the Julich-Brain Cytarchitectonic Atlas.
DOI: 10.21979/n9/f4meeq
title: Pilot Site Safety Documents and Utility Records

description: All safety documents generated for pilot site testing and PUB utility records incurred during testing
DOI: 10.21979/n9/fuxu8p
title: Progress Meeting Records

description: Progress Meeting Records
DOI: 10.6084/m9.figshare.24464107
title: Supplementary Data for article '<b>Biochar-plant interactions drive more nonbiochar carbon sequestration in a rice paddy soil</b>' by Liu et al.

description: Soil amendment with biochar is being promoted as a promising strategy for carbon (C) stabilization and accrual, which are key to climate change mitigation. However, it remains elusive on how biochar addition influences nonbiochar C in soils and its mechanisms, especially in the presence of plants. Here we conducted a 365-day soil microcosm experiment with and without adding <sup>13</sup>C-labeled biochar into topsoil to quantify changes in nonbiochar C in the topsoil and subsoil in the presence or absence of rice plants and to determine the mechanisms by which biochar controls nonbiochar C accrual in the soil profile. The nonbiochar C content of topsoil was not affected by biochar addition in the absence of rice plants, but was significantly increased by 4.5% in the presence of rice plants, which could result from increases in the soil macroaggregate fraction, iron (Fe)-bound nonbiochar organic C content, and fungal biomass collectively. However, biochar amendment had no effect on the content of nonbiochar organic C in the subsoil. Overall, biochar-plant interactions drive more nonbiochar C sequestration in the topsoil, and the changes of nonbiochar C in planted soils following biochar addition should be quantified to better assess the soil C sequestration potential in agricultural lands.
DOI: 10.34740/kaggle/dsv/6839927
title: WallStreetBets 2022
DOI: 10.6084/m9.figshare.24460114.v5
title: lunar_surface_chemistry_maps

description: The data files depict the abundances of SiO2, TiO2 and MgO observed by the KAGUYA multiband imager and TiO2, FeO and Al2O3 of the young mare basalts unit. The data files are in the format of .tif and can be opend by the software ArcGIS.
DOI: 10.5519/qd.mzv5ijx8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (251 records)
DOI: 10.5281/zenodo.10054747
title: The COAD-Artifact Dataset
DOI: 10.5281/zenodo.10054748
title: The COAD-Artifact Dataset
DOI: 10.5281/zenodo.10056378
title: The COAD-Artifact Dataset
DOI: 10.5281/zenodo.10056386
title: A IMPORTÂNCIA DO CRM NA GESTÃO DE VENDAS DE PNEUS DE CARGA

description: o CRM possui uma grande importância no departamento comercial de uma empresa, porém ainda existem desafios e limitações na implantação da ferramenta e até mesmo aceitação dos colaboradores mais velhos da empresa, aos quais, já possuem suas maneiras e manias de gerenciar sua carteira de clientes para atingir os objetivos e metas de vendas. O objetivo deste artigo é descrever a implementação do sistema CRM em uma empresa que atua no ramo de vendas de pneus de carga. Para a elaboração da pesquisa partiu-se de uma revisão bibliográfica sobre o tema central (implantação do sistema CRM) e tomou como base a aplicação dos conceitos estudados em um caso real em uma empresa de vendas de pneus de carga de pequeno porte. Com a implantação da ferramenta CRM na empresa X foram identificados uma grande economia e redução significativa de impressões de papel, pois todas as informações passaram a ser acessadas pelo Dynamo Pneus, facilitando no compartilhamento de informações e tomada de decisões. Em suma, a implantação do sistema CRM teve um impacto positivo na empresa X, impulsionando o desempenho do departamento comercial, aumentando as vendas, melhorando a satisfação dos clientes, fidelização e otimizando as operações internas e externas.
DOI: 10.5281/zenodo.10056387
title: A IMPORTÂNCIA DO CRM NA GESTÃO DE VENDAS DE PNEUS DE CARGA

description: o CRM possui uma grande importância no departamento comercial de uma empresa, porém ainda existem desafios e limitações na implantação da ferramenta e até mesmo aceitação dos colaboradores mais velhos da empresa, aos quais, já possuem suas maneiras e manias de gerenciar sua carteira de clientes para atingir os objetivos e metas de vendas. O objetivo deste artigo é descrever a implementação do sistema CRM em uma empresa que atua no ramo de vendas de pneus de carga. Para a elaboração da pesquisa partiu-se de uma revisão bibliográfica sobre o tema central (implantação do sistema CRM) e tomou como base a aplicação dos conceitos estudados em um caso real em uma empresa de vendas de pneus de carga de pequeno porte. Com a implantação da ferramenta CRM na empresa X foram identificados uma grande economia e redução significativa de impressões de papel, pois todas as informações passaram a ser acessadas pelo Dynamo Pneus, facilitando no compartilhamento de informações e tomada de decisões. Em suma, a implantação do sistema CRM teve um impacto positivo na empresa X, impulsionando o desempenho do departamento comercial, aumentando as vendas, melhorando a satisfação dos clientes, fidelização e otimizando as operações internas e externas.
DOI: 10.5281/zenodo.10056406
title: The COAD-Artifact Dataset
DOI: 10.5281/zenodo.10056407
title: The COAD-Artifact Dataset
DOI: 10.5281/zenodo.10056420
title: A IMPORTÂNCIA DO TRATAMENTO RIGOROSO DO DIABETES MELLITUS PARA PREVENÇÃO DA INSUFICIÊNCIA RENAL CRÔNICA

description: INTRODUÇÃO: O diabetes mellitus (DM) é descrito como uma disfunção no metabolismo que ocasiona quadros contínuos e persistentes de hiperglicemia, devido a uma deficiência na produção de insulina, na sua ação ou em ambos os mecanismos, ocasionando complicações em longo prazo, dentre elas destaca-se a Insuficiência Renal Crônica (IRC). OBJETIVO GERAL: O presente estudo objetivou realizar uma revisão de literatura narrativa sobre a importância do tratamento rigoroso do diabetes mellitus na prevenção da insuficiência renal crônica. METODOLOGIA: Trata-se de uma revisão, cujo intuito foi colher sínteses sobre várias perspectivas da literatura acerca da temática abordada. A pesquisa é construída a partir de uma análise sistemática da literatura relacionada ao tema, reunindo evidências científicas de fontes variadas, incluindo artigos, revistas e instituições tanto nacionais quanto internacionais. CONCLUSÃO: Pacientes com DM têm um risco significativamente maior de desenvolver IRC em comparação com indivíduos sem DM, sendo a progressão da doença um importante fator contribuinte para morbidade e mortalidade em pacientes diabéticos. Portanto, o tratamento rigoroso do DM foi essencial na prevenção da IRC em pacientes diabéticos, bem, como, o rastreio efetivo de potenciais portadores para elaboração de condutas adequadas a fim de evitar complicações.
DOI: 10.5281/zenodo.10056421
title: A IMPORTÂNCIA DO TRATAMENTO RIGOROSO DO DIABETES MELLITUS PARA PREVENÇÃO DA INSUFICIÊNCIA RENAL CRÔNICA

description: INTRODUÇÃO: O diabetes mellitus (DM) é descrito como uma disfunção no metabolismo que ocasiona quadros contínuos e persistentes de hiperglicemia, devido a uma deficiência na produção de insulina, na sua ação ou em ambos os mecanismos, ocasionando complicações em longo prazo, dentre elas destaca-se a Insuficiência Renal Crônica (IRC). OBJETIVO GERAL: O presente estudo objetivou realizar uma revisão de literatura narrativa sobre a importância do tratamento rigoroso do diabetes mellitus na prevenção da insuficiência renal crônica. METODOLOGIA: Trata-se de uma revisão, cujo intuito foi colher sínteses sobre várias perspectivas da literatura acerca da temática abordada. A pesquisa é construída a partir de uma análise sistemática da literatura relacionada ao tema, reunindo evidências científicas de fontes variadas, incluindo artigos, revistas e instituições tanto nacionais quanto internacionais. CONCLUSÃO: Pacientes com DM têm um risco significativamente maior de desenvolver IRC em comparação com indivíduos sem DM, sendo a progressão da doença um importante fator contribuinte para morbidade e mortalidade em pacientes diabéticos. Portanto, o tratamento rigoroso do DM foi essencial na prevenção da IRC em pacientes diabéticos, bem, como, o rastreio efetivo de potenciais portadores para elaboração de condutas adequadas a fim de evitar complicações.
DOI: 10.5281/zenodo.10056418
title: Multivocal Literature Review Protocol - Investigating the Barriers that Women face in Software Development Teams focusing on the context of Proprietary Software Ecosystems
DOI: 10.5281/zenodo.10056419
title: Multivocal Literature Review Protocol - Investigating the Barriers that Women face in Software Development Teams focusing on the context of Proprietary Software Ecosystems
DOI: 10.5281/zenodo.10056445
title: Ensemble experiment to investigate Antarctic meltwater input under global warming by GFDL CM2.1

description: Dataset for "Non-monotonic responses of Atlantic Meridional Overturning Circulation to Antarctic meltwater forcing" submitted to GRL.
GW indicates global_warming experiments without meltwater input whereas MW is with meltwater input.
atlantic, global, surface_density, integrated_density.mat is preprocessed ocean dataset (structure) by MATLAB.
DOI: 10.5281/zenodo.10056446
title: Ensemble experiment to investigate Antarctic meltwater input under global warming by GFDL CM2.1

description: Dataset for "Non-monotonic responses of Atlantic Meridional Overturning Circulation to Antarctic meltwater forcing" submitted to GRL.
GW indicates global_warming experiments without meltwater input whereas MW is with meltwater input.
atlantic, global, surface_density, integrated_density.mat is preprocessed ocean dataset (structure) by MATLAB.
DOI: 10.5281/zenodo.10056437
title: DANO EXISTENCIAL NAS RELAÇÕES DE TRABALHO

description: As relações de trabalho são dinâmicas e se adaptam às necessidades do mercado, porém nem sempre são acompanhadas de legislação que regule a matéria. Visando a proteção do trabalhador diante da fúria do capital, nasceu o instituto o dano existencial objetivando indenizar financeiramente o trabalhador quando seu direito ou perspectiva de existir é violado. O objetivo do presente estudo é compreender o instituto, sua aplicabilidade nas relações laborais visando o aprimoramento do exercício dos direitos dos trabalhadores em um ambiente digno e saudável. A metodologia utilizada foi a pesquisa bibliográfica exploratória, que evidenciou uma jurisprudência tímida, por vezes confusa perante outros institutos pré existentes.
DOI: 10.5281/zenodo.10056438
title: DANO EXISTENCIAL NAS RELAÇÕES DE TRABALHO

description: As relações de trabalho são dinâmicas e se adaptam às necessidades do mercado, porém nem sempre são acompanhadas de legislação que regule a matéria. Visando a proteção do trabalhador diante da fúria do capital, nasceu o instituto o dano existencial objetivando indenizar financeiramente o trabalhador quando seu direito ou perspectiva de existir é violado. O objetivo do presente estudo é compreender o instituto, sua aplicabilidade nas relações laborais visando o aprimoramento do exercício dos direitos dos trabalhadores em um ambiente digno e saudável. A metodologia utilizada foi a pesquisa bibliográfica exploratória, que evidenciou uma jurisprudência tímida, por vezes confusa perante outros institutos pré existentes.
DOI: 10.5281/zenodo.10053231
title: Comprehensive 16s rRNA sequencing and metabolomics to investigate the effect of anticancer bioactive peptides combined with oxaliplatin on gastric cancer

description: 背景: 胃癌的发生、发展与肠道菌群密切相关。既往研究发现抗癌生物活性肽(ACBP)与奥沙利铂(OXA)联合对胃癌有显着的治疗作用,但ACBP-OXA对肠道菌群的影响仍不清楚。
Methods: We established a nude mouse model of ACBP-OXA combined therapy for gastric cancer, the diversity of gut microbiota and fecal metabolomics were studied, and the correlation between gut microbiota and metabolites was analyzed.
Results: ACBP-OXA联合疗法对肠道菌群具有很强的调节作用。16s rRNA研究发现,在门中,ACBP-OXA处理后,厚壁菌门和拟杆菌门的相对丰度发生显着变化,厚壁菌门的相对丰度下降,拟杆菌门的相对丰度增加。属内,ACBP-OXA组中毛螺菌科NK4AB6组的相对丰度降低,odpribacter和拟杆菌属的相对丰度增加。ACBP组乳酸菌相对丰度增加,ACBP-OXA和OXA组葡萄球菌相对丰度下降。GO和KEGG研究发现联合治疗机制与代谢和免疫有关。通过代谢组学研究,本研究发现差异代谢物与Benzenoids、Ligans、neoligans、其中脂质和脂类大多参与酪氨酸代谢、不饱和脂肪酸生物合成、苯丙氨酸代谢α-生物过程。将代谢组学与16s rRNA长寿素相结合,发现氨基酸相关代谢物与Jetgalilicus、Staphylococcus、Proteiniphilum等细菌属相关。
结论:   ACBP与ACBP-OXA联合治疗可能通过改变肠道菌群的分布多样性和菌群结构来改善和恢复胃癌裸鼠的肠道菌群,这可能是抑制胃癌发生、发展的关键。该研究为进一步研究ACBP-OXA在胃癌治疗中的应用提供了新的方向。
DOI: 10.5281/zenodo.10053230
title: Comprehensive 16s rRNA sequencing and metabolomics to investigate the effect of anticancer bioactive peptides combined with oxaliplatin on gastric cancer

description: 背景: 胃癌的发生、发展与肠道菌群密切相关。既往研究发现抗癌生物活性肽(ACBP)与奥沙利铂(OXA)联合对胃癌有显着的治疗作用,但ACBP-OXA对肠道菌群的影响仍不清楚。
Methods: We established a nude mouse model of ACBP-OXA combined therapy for gastric cancer, the diversity of gut microbiota and fecal metabolomics were studied, and the correlation between gut microbiota and metabolites was analyzed.
Results: ACBP-OXA联合疗法对肠道菌群具有很强的调节作用。16s rRNA研究发现,在门中,ACBP-OXA处理后,厚壁菌门和拟杆菌门的相对丰度发生显着变化,厚壁菌门的相对丰度下降,拟杆菌门的相对丰度增加。属内,ACBP-OXA组中毛螺菌科NK4AB6组的相对丰度降低,odpribacter和拟杆菌属的相对丰度增加。ACBP组乳酸菌相对丰度增加,ACBP-OXA和OXA组葡萄球菌相对丰度下降。GO和KEGG研究发现联合治疗机制与代谢和免疫有关。通过代谢组学研究,本研究发现差异代谢物与Benzenoids、Ligans、neoligans、其中脂质和脂类大多参与酪氨酸代谢、不饱和脂肪酸生物合成、苯丙氨酸代谢α-生物过程。将代谢组学与16s rRNA长寿素相结合,发现氨基酸相关代谢物与Jetgalilicus、Staphylococcus、Proteiniphilum等细菌属相关。
结论:   ACBP与ACBP-OXA联合治疗可能通过改变肠道菌群的分布多样性和菌群结构来改善和恢复胃癌裸鼠的肠道菌群,这可能是抑制胃癌发生、发展的关键。该研究为进一步研究ACBP-OXA在胃癌治疗中的应用提供了新的方向。
DOI: 10.5519/qd.bnnmy624
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (124 records)
DOI: 10.6084/m9.figshare.24464155
title: Unveiling urban area growth dynamics: Insights from a comprehensive study of urban area growth curves

description: We fitted Logistics and Gompertz models to the urban area growth curves of 258 cities in the United States from 1815 to 2015 and assessed their goodness of fit. Among the datasets, "L" represents the logistic model, and "G" represents the Gompertz model.