cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.15041005
title: Additional file 1 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 1: Fig. S1. Expression of positive and negative cell-surface markers in mesenchymal stromal cells (MSCs), and their differentiation potential. (A) Representative flow cytometric profiles of colony-forming synovium-derived MSCs stained for CD44, CD73, CD90, and CD105 (positive cell-surface markers), and CD45 and CD31(negative cell-surface markers) (purple: isotype control; red: sample). (B) Chondrogenesis. Histological sections stained with toluidine bule are shown. (C) Adipogenesis. Culture dishes stained with oil red-O are shown. (D) Calcification. Culture dishes stained with alizarin red are shown. Fig. S2. Effect of MSC-EVs on meniscus regeneration. Histological and immunohistochemical (IHC) staining of the best and the worst regenerated menisci with or without MSCs EV treatment. Samples were stained with HE, safranin-O/fast green, type II collagen (Col II), and type I collagen (Col I) (n = 6; 3 weeks). Fig. S3. Early effect of MSC-EVs in a mouse meniscal defect model. IHC evaluation of proliferative cell nuclear antigen (PCNA) staining after 1 week in the best and the worst regenerated meniscus with and without MSC-EV treatment. Fig. S4. Volcano plot presenting the transcriptome/RNA sequencing data for synovial MSCs cultured with or without MSC-EVs for 24 h (n = 4). Gene set enrichment analysis. Fig. S5. KEGG pathway analysis of synovial MSCs treated with MSC-EVs. Fig. S6. Protein-protein interactions on upregulated gene set in synovial MSCs treated with MSC-EVs.
DOI: 10.6084/m9.figshare.15041019
title: Additional file 1 of Morning report for all: a qualitative study of disseminating case conferences via podcasting

description: Additional file 1. Supplemental Materials. Developer Interview Guide and Listener Interview Guide.
DOI: 10.6084/m9.figshare.15041005.v1
title: Additional file 1 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 1: Fig. S1. Expression of positive and negative cell-surface markers in mesenchymal stromal cells (MSCs), and their differentiation potential. (A) Representative flow cytometric profiles of colony-forming synovium-derived MSCs stained for CD44, CD73, CD90, and CD105 (positive cell-surface markers), and CD45 and CD31(negative cell-surface markers) (purple: isotype control; red: sample). (B) Chondrogenesis. Histological sections stained with toluidine bule are shown. (C) Adipogenesis. Culture dishes stained with oil red-O are shown. (D) Calcification. Culture dishes stained with alizarin red are shown. Fig. S2. Effect of MSC-EVs on meniscus regeneration. Histological and immunohistochemical (IHC) staining of the best and the worst regenerated menisci with or without MSCs EV treatment. Samples were stained with HE, safranin-O/fast green, type II collagen (Col II), and type I collagen (Col I) (n = 6; 3 weeks). Fig. S3. Early effect of MSC-EVs in a mouse meniscal defect model. IHC evaluation of proliferative cell nuclear antigen (PCNA) staining after 1 week in the best and the worst regenerated meniscus with and without MSC-EV treatment. Fig. S4. Volcano plot presenting the transcriptome/RNA sequencing data for synovial MSCs cultured with or without MSC-EVs for 24 h (n = 4). Gene set enrichment analysis. Fig. S5. KEGG pathway analysis of synovial MSCs treated with MSC-EVs. Fig. S6. Protein-protein interactions on upregulated gene set in synovial MSCs treated with MSC-EVs.
DOI: 10.6084/m9.figshare.15041011
title: Additional file 2 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 2: Table S1. Antibodies used for cytometric analyses.
DOI: 10.6084/m9.figshare.15041019.v1
title: Additional file 1 of Morning report for all: a qualitative study of disseminating case conferences via podcasting

description: Additional file 1. Supplemental Materials. Developer Interview Guide and Listener Interview Guide.
DOI: 10.6084/m9.figshare.15041011.v1
title: Additional file 2 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 2: Table S1. Antibodies used for cytometric analyses.
DOI: 10.6084/m9.figshare.15041017
title: Additional file 4 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 4: Table S3. RNA sequencing data for chondrocytes and synovial MSCs cultured with or without MSC-EVs.
DOI: 10.6084/m9.figshare.15041017.v1
title: Additional file 4 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 4: Table S3. RNA sequencing data for chondrocytes and synovial MSCs cultured with or without MSC-EVs.
DOI: 10.6084/m9.figshare.15041020
title: Additional file 5 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 5: Table S4. Sequences of primers used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.15041020.v1
title: Additional file 5 of Extracellular vesicles derived from mesenchymal stromal cells mediate endogenous cell growth and migration via the CXCL5 and CXCL6/CXCR2 axes and repair menisci

description: Additional file 5: Table S4. Sequences of primers used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.15041028
title: Additional file 1 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 1: Table S1. The top 17 DMP-associated genes (screened by the enrichment of DMPs on their promoter regions) on the 22 autosomal chromosomes according to the analysis of 14,120 DMPs at a false discovery rate (FDR) threshold (P
DOI: 10.6084/m9.figshare.15041028.v1
title: Additional file 1 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 1: Table S1. The top 17 DMP-associated genes (screened by the enrichment of DMPs on their promoter regions) on the 22 autosomal chromosomes according to the analysis of 14,120 DMPs at a false discovery rate (FDR) threshold (P
DOI: 10.6084/m9.figshare.15041031
title: Additional file 2 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 2: Table S2. The list of differentially methylated genes that are involved in modulating small GTPase activities according to the 9313 DMPs in GO enrichment analysis.
DOI: 10.6084/m9.figshare.15041034.v1
title: Additional file 3 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 3: Table S3. According to the KEGG pathway, the list of differentially methylated genes is determined by 9313 DMPs and is involved in the PI3K-AKT, MAPK, RAS, and WNT cancer signaling pathways analysis.
DOI: 10.6084/m9.figshare.15041031.v1
title: Additional file 2 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 2: Table S2. The list of differentially methylated genes that are involved in modulating small GTPase activities according to the 9313 DMPs in GO enrichment analysis.
DOI: 10.6084/m9.figshare.15041034
title: Additional file 3 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 3: Table S3. According to the KEGG pathway, the list of differentially methylated genes is determined by 9313 DMPs and is involved in the PI3K-AKT, MAPK, RAS, and WNT cancer signaling pathways analysis.
DOI: 10.6084/m9.figshare.15041037
title: Additional file 4 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 4: Table S4. The top 20 DMP-associated genes (screened by the enrichment of DMPs on their promoter regions) on the 22 autosomal chromosomes according to the analysis of 2969 DMPs at a false discovery rate (FDR) threshold (P
DOI: 10.6084/m9.figshare.15041037.v1
title: Additional file 4 of Genome-wide DNA methylome analysis identifies methylation signatures associated with survival and drug resistance of ovarian cancers

description: Additional file 4: Table S4. The top 20 DMP-associated genes (screened by the enrichment of DMPs on their promoter regions) on the 22 autosomal chromosomes according to the analysis of 2969 DMPs at a false discovery rate (FDR) threshold (P
DOI: 10.6084/m9.figshare.15041077
title: Additional file 1 of Development of in-house fully residual deep convolutional neural network-based segmentation software for the male pelvic CT

description: Additional file 1. Data summary in Experiments 1, 2 and 3.
DOI: 10.6084/m9.figshare.15041077.v1
title: Additional file 1 of Development of in-house fully residual deep convolutional neural network-based segmentation software for the male pelvic CT

description: Additional file 1. Data summary in Experiments 1, 2 and 3.
DOI: 10.6084/m9.figshare.15041097
title: Additional file 10 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 10: Table S8. Comparative genomics analysis of Ras superfamily GTPases in Naegleria spp.
DOI: 10.6084/m9.figshare.15041097.v1
title: Additional file 10 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 10: Table S8. Comparative genomics analysis of Ras superfamily GTPases in Naegleria spp.
DOI: 10.6084/m9.figshare.15041100
title: Additional file 11 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 11: Table S9. Putative functional annotation of genes identified in N. fowleri but not N. gruberi.
DOI: 10.6084/m9.figshare.15041100.v1
title: Additional file 11 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 11: Table S9. Putative functional annotation of genes identified in N. fowleri but not N. gruberi.
DOI: 10.6084/m9.figshare.15041109.v1
title: Additional file 13 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 13: Table S11. Comparative genomic analysis of proteases identified in Naegleria spp.
DOI: 10.6084/m9.figshare.15041103
title: Additional file 12 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 12: Table S10. Differentially expressed genes following mouse-passage of N. fowleri LEE. Grey shading indicates genes found in N. fowleri alone or N. fowleri.
DOI: 10.6084/m9.figshare.15041103.v1
title: Additional file 12 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 12: Table S10. Differentially expressed genes following mouse-passage of N. fowleri LEE. Grey shading indicates genes found in N. fowleri alone or N. fowleri.
DOI: 10.6084/m9.figshare.15041112
title: Additional file 14 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 14: Table S12. Homology searching results for protease S81.
DOI: 10.6084/m9.figshare.15041115
title: Additional file 15 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 15: Table S13. Comparative genomic analysis of genes involved in autophagy in N. fowleri.
DOI: 10.6084/m9.figshare.15041109
title: Additional file 13 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 13: Table S11. Comparative genomic analysis of proteases identified in Naegleria spp.
DOI: 10.6084/m9.figshare.15041112.v1
title: Additional file 14 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 14: Table S12. Homology searching results for protease S81.
DOI: 10.6084/m9.figshare.15041115.v1
title: Additional file 15 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 15: Table S13. Comparative genomic analysis of genes involved in autophagy in N. fowleri.
DOI: 10.6084/m9.figshare.15041118
title: Additional file 16 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 16: Table S14. Comparative genomic analysis of genes involved in the Unfolded Protein Response and the ER-Associated Degradation machinery in N. fowleri.
DOI: 10.6084/m9.figshare.15041118.v1
title: Additional file 16 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 16: Table S14. Comparative genomic analysis of genes involved in the Unfolded Protein Response and the ER-Associated Degradation machinery in N. fowleri.
DOI: 10.6084/m9.figshare.15041121
title: Additional file 17 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 17: Table 15. Repeat domain-containing proteins in Naegleria spp. identified by BLAST search using human adhesion G protein-coupled receptors as queries.
DOI: 10.6084/m9.figshare.15041124.v1
title: Additional file 18 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 18: Table S16. Predicted adhesion G protein-coupled receptors in Naegleria spp.
DOI: 10.6084/m9.figshare.15041121.v1
title: Additional file 17 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 17: Table 15. Repeat domain-containing proteins in Naegleria spp. identified by BLAST search using human adhesion G protein-coupled receptors as queries.
DOI: 10.6084/m9.figshare.15041124
title: Additional file 18 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 18: Table S16. Predicted adhesion G protein-coupled receptors in Naegleria spp.
DOI: 10.6084/m9.figshare.15041127
title: Additional file 19 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 19: Table S17. TM9 orthologues identified in Naegleria spp.
DOI: 10.6084/m9.figshare.15041127.v1
title: Additional file 19 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 19: Table S17. TM9 orthologues identified in Naegleria spp.
DOI: 10.6084/m9.figshare.15041133
title: Additional file 1 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 1: Table S1. % identity of SSU rRNA genes. Sheet 1: Naegleria species. Sheet 2: Selected tetrapod organisms.
DOI: 10.6084/m9.figshare.15041136
title: Additional file 2 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 2: Table S2. Meiosis gene comparative genomics.
DOI: 10.6084/m9.figshare.15041133.v1
title: Additional file 1 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 1: Table S1. % identity of SSU rRNA genes. Sheet 1: Naegleria species. Sheet 2: Selected tetrapod organisms.
DOI: 10.6084/m9.figshare.15041136.v1
title: Additional file 2 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 2: Table S2. Meiosis gene comparative genomics.
DOI: 10.6084/m9.figshare.15041148
title: Additional file 5 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 5: Table S3. Transcription factors in Naegleria spp.
DOI: 10.6084/m9.figshare.15041148.v1
title: Additional file 5 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 5: Table S3. Transcription factors in Naegleria spp.
DOI: 10.6084/m9.figshare.15041151
title: Additional file 6 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 6: Table S4. Genes involved in sterol production in N. fowleri.
DOI: 10.6084/m9.figshare.15041151.v1
title: Additional file 6 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 6: Table S4. Genes involved in sterol production in N. fowleri.
DOI: 10.6084/m9.figshare.15041154
title: Additional file 7 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 7: Table S5. Comparative genomic assessment of mitochondrial genes in Naegleria spp.
DOI: 10.6084/m9.figshare.15041154.v1
title: Additional file 7 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 7: Table S5. Comparative genomic assessment of mitochondrial genes in Naegleria spp.
DOI: 10.6084/m9.figshare.15041157
title: Additional file 8 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 8: Table S6. Cytoskeletal genes in N. fowleri.
DOI: 10.6084/m9.figshare.15041157.v1
title: Additional file 8 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 8: Table S6. Cytoskeletal genes in N. fowleri.
DOI: 10.6084/m9.figshare.15041160.v1
title: Additional file 9 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 9: Table S7. Results of homology searching for membrane trafficking components in the predicted proteomes and genomes of N. fowleri V212, 39863, and 986.
DOI: 10.6084/m9.figshare.15041160
title: Additional file 9 of Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri

description: Additional file 9: Table S7. Results of homology searching for membrane trafficking components in the predicted proteomes and genomes of N. fowleri V212, 39863, and 986.
DOI: 10.6084/m9.figshare.15041169
title: Additional file 1 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors

description: Additional file 1: Table S1. Individual HDR efficiency.
DOI: 10.6084/m9.figshare.15041169.v1
title: Additional file 1 of Single nucleotide replacement in the Atlantic salmon genome using CRISPR/Cas9 and asymmetrical oligonucleotide donors

description: Additional file 1: Table S1. Individual HDR efficiency.
DOI: 10.6084/m9.figshare.15041230.v1
title: Additional file 1 of The health system costs of post abortion care in Tanzania

description: Additional file 1.
DOI: 10.6084/m9.figshare.15041230
title: Additional file 1 of The health system costs of post abortion care in Tanzania

description: Additional file 1.
DOI: 10.6084/m9.figshare.15041307
title: Additional file 2 of Identification of tomato accessions as source of new genes for improving heat tolerance: from controlled experiments to field

description: Additional file 2: Supplementary Table 1: Details of the accessions analysed in the different experiments carrried out in the current study. Species, group, subgroup, donor, and the experiments in which they were analyzed are listed. Supplementary Table 2: Adjusted values for the 235 accession for the traits flower number (FLN), fruit number (FRN) and fruit set percentage (FRS) recalculated using the adjusted factor for each block at three temperature regimen T1(25ºC/20ºC), T2(30ºC/25ºC) and T3 (35ºC/30ºC). Supplementary Table 3: Values for fruit set percentage (FRS) at T1 (25ºC/20ºC), T2(30ºC/25ºC) and T3(35ºC/30ºC) of the 76 genotypes with significantly higher FRS than the sensitive controls at least one high temperature regimen. Temperature regimen indicates at what regime the tolerance was observed: T2 (29 genotypes), T3 (25 genotypes) or at both temperature regimens T2_T3 (21 genotypes). Supplementary Table 4: Dunnett´s test to compare 16 putative heat tolerant genotypes and the control ‘MoneyMaker’ for flower number (FLN) and fruit number (FRN) in each of the four truss evaluated in MVCRI_2018 experiment.
DOI: 10.6084/m9.figshare.15041307.v1
title: Additional file 2 of Identification of tomato accessions as source of new genes for improving heat tolerance: from controlled experiments to field

description: Additional file 2: Supplementary Table 1: Details of the accessions analysed in the different experiments carrried out in the current study. Species, group, subgroup, donor, and the experiments in which they were analyzed are listed. Supplementary Table 2: Adjusted values for the 235 accession for the traits flower number (FLN), fruit number (FRN) and fruit set percentage (FRS) recalculated using the adjusted factor for each block at three temperature regimen T1(25ºC/20ºC), T2(30ºC/25ºC) and T3 (35ºC/30ºC). Supplementary Table 3: Values for fruit set percentage (FRS) at T1 (25ºC/20ºC), T2(30ºC/25ºC) and T3(35ºC/30ºC) of the 76 genotypes with significantly higher FRS than the sensitive controls at least one high temperature regimen. Temperature regimen indicates at what regime the tolerance was observed: T2 (29 genotypes), T3 (25 genotypes) or at both temperature regimens T2_T3 (21 genotypes). Supplementary Table 4: Dunnett´s test to compare 16 putative heat tolerant genotypes and the control ‘MoneyMaker’ for flower number (FLN) and fruit number (FRN) in each of the four truss evaluated in MVCRI_2018 experiment.
DOI: 10.34810/data72/1133
title: 01AC_1.MR.0004.0053.2013.03.10.14.06.27.296875.165384294.IMA
DOI: 10.6084/m9.figshare.13487295.v3
title: data - draining tension pneumomediastinum.xlsx

description: It combined the local anatomical characteristics to describe a method in a normative manner of draining tension pneumomediastinum.
DOI: 10.6084/m9.figshare.13487295.v4
title: data - draining tension pneumomediastinum.xlsx

description: It combined the local anatomical characteristics to describe a method in a normative manner of draining tension pneumomediastinum.
DOI: 10.6084/m9.figshare.13487295.v5
title: data - draining tension pneumomediastinum2021.xlsx

description: It combined the local anatomical characteristics to describe a method in a normative manner of draining tension pneumomediastinum.
DOI: 10.34810/data72/1134
title: 01AC_1.MR.0004.0089.2013.03.10.14.06.27.296875.165384942.IMA
DOI: 10.34810/data72/1135
title: 01AC_1.MR.0004.0079.2013.03.10.14.06.27.296875.165384762.IMA