cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4pmy7t
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arnica mollis var. silvatica (Greene) Maguire"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0385103-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfndqm
title: Occurrence Download

description: A dataset containing 2079 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-110.09211 32.12644,-59.63298 32.12644,-59.63298 53.63005,-110.09211 53.63005,-110.09211 32.12644))",
 "HasCoordinate is true",
 "LifeStage is Adult",
 "TaxonKey is Anavitrinella pampinaria (Guenée, 1857)"
 ]
}

 The dataset includes 2079 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205085-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/ifao.archives.134570
title: Ostracon hiératique Ifao - ODM 916_nu_2003_01608

description: Référence : nu_2003_01608<br />Site : Deir el-Médina<br />Type : photographie<br />
DOI: 10.15468/dl.ywcza4
title: Occurrence Download

description: A dataset containing 113 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Syngonanthus reclinatus (Körn.) Ruhland"
 ]
}

 The dataset includes 113 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003738-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pt76ge
title: Occurrence Download

description: A dataset containing 125240 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON(((5.598907470703125 43.481822852999905,5.511016845703125 43.509717009288075,5.400552749633789 43.51127322324609,5.412139892578125 43.54257572246922,5.4547119140625 43.563476493226595,5.480804443359375 43.61122246320032,5.483551025390625 43.6499881760459,5.503549575805664 43.66644361490711,5.598907470703125 43.66985832954972,5.69091796875 43.70362249839005,5.763702392578124 43.661911057260674,5.79254150390625 43.625141236940564,5.804901123046875 43.601278509333646,5.799407958984375 43.5734266934657,5.76507568359375 43.52565074189047,5.71563720703125 43.52166770320007,5.598907470703125 43.481822852999905)))"
 ]
}

 The dataset includes 125240 records from 387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028815-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n89pcr
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Callulops marmoratus Kraus & Allison, 2003"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305225-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zn6jcc
title: Occurrence Download

description: A dataset containing 2485 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abarema barbouriana (Standl.) Barneby & J.W.Grimes, Abarema auriculata (Benth.) Barneby & J.W.Grimes, Abarema barbouriana var. arenaria (Ducke) Barneby & J.W.Grimes, Abarema barbouriana var. barbouriana, Abarema brachystachya (DC.) Barneby & J.W.Grimes, Abarema campestris (Spruce ex Benth.) Barneby & J.W.Grimes, Abarema cochleata (Willd.) Barneby & J.W.Grimes, Abarema cochleata var. cochleata, Abarema cochleata var. moniliformis (Barneby & J.W.Grimes) Barneby & J.W.Grimes, Abarema obovata (Benth.) Barneby & J.W.Grimes, Inga brachystachya DC., Inga brachystachya Ducke, Inga cochleata Willd., Pithecellobium auriculatum Benth., Pithecellobium barbourianum Standl., Pithecellobium campestre Spruce ex Benth., Pithecellobium lusorium (Vell.) Benth.)"
 ]
}

 The dataset includes 2485 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138661-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr3pxy
title: Occurrence Download

description: A dataset containing 795 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry MULTIPOLYGON(((-69.20756 -32.00691,-69.20152 -32.0032,-69.18202 -31.99757,-69.13042 -31.99757,-69.11807 -31.97096,-69.11528 -31.92682,-69.10954 -31.89294,-69.10136 -31.84723,-69.11616 -31.82314,-69.12499 -31.80713,-69.14744 -31.73532,-69.15982 -31.72707,-69.30188 -31.71481,-69.36992 -31.72418,-69.41298 -32.06503,-69.40664 -32.07729,-69.40039 -32.07504,-69.39308 -32.07742,-69.38404 -32.06969,-69.37978 -32.06424,-69.34262 -32.08261,-69.31498 -32.09209,-69.30679 -32.08013,-69.2994 -32.07362,-69.29019 -32.07143,-69.27856 -32.07333,-69.26077 -32.03789,-69.26156 -32.03254,-69.25225 -32.02404,-69.23554 -32.01228,-69.2184 -32.00766,-69.21028 -32.01058,-69.20756 -32.00691)))",
 "EventDate is less than or equal to 2021-12-31"
 ]
}

 The dataset includes 795 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0088295-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43zqr3
title: Occurrence Download

description: A dataset containing 3468 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Tracking of Arctic tern migrations 2007-2008"
 ]
}

 The dataset includes 3468 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171948-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.79hjwv
title: Occurrence Download

description: A dataset containing 890 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spergularia macrorrhiza (Req. ex Loisel.) Heynh."
 ]
}

 The dataset includes 890 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138662-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rgv6mz
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia duckei (Croizat) Oudejans"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0205096-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nne26s
title: Occurrence Download

description: A dataset containing 202 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megophrys shapingensis Liu, 1950"
 ]
}

 The dataset includes 202 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0305227-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pr2ghu
title: Occurrence Download

description: A dataset containing 196722 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Equisetum sylvaticum L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is False",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is less than 180",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180"
 ]
}

 The dataset includes 196722 records from 653 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008062-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffprmm
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Malacomys cansdalei Ansell, 1958",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 74 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033745-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tvjmx
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Nepal, Bhutan, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Dercas lycorias (Doubleday, 1842)"
 ]
}

 The dataset includes 77 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033746-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ta532s
title: Occurrence Download

description: A dataset containing 26283 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orchidaceae"
 ]
}

 The dataset includes 26283 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033747-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kh5kb6
title: Occurrence Download

description: A dataset containing 371431 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Threskiornis aethiopicus (Latham, 1790)"
 ]
}

 The dataset includes 371431 records from 334 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033729-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.568b3t
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyperolius pickersgilli Raw, 1982",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033748-250525065834625/datasets/export for details.
DOI: 10.15468/dl.jruf2h
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pisidium hinzi Kuiper, 1975"
 ]
}

 The dataset includes 11 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033749-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.12751/g-node.2mnxpm
title: FreeSurfer parcellations in MNI space

description: FreeSurfer `recon-all` was run on the MNI152NLin6Asym and MNI152NLin2009cAsym T1w templates. 
The outputs were used to create MNI space versions of the popular FreeSurfer parcellations (Aseg-subcortical, Desikan-Killiany, Desikan-Killiany-Tourville, Destrieux). 
Cortical parcellations were smoothed to fit a more lenient cortical mask. 
The repository as a whole is licensed under a CC BY-SA 4.0 license, while the templates are subject to a specific license by the McGill University (see `/templates/LICENSE`).
description: References: G. Grabner, A. L. Janke, M. M. Budge, D. Smith, J. Pruessner, and D. L. Collins, Symmetric atlasing and model based segmentation: an application to the hippocampus in older adults, Med Image Comput Comput Assist Interv Int Conf Med Image Comput Comput Assist Interv, vol. 9, pp. 58–66, 2006. (https://doi.org/10.1007/11866763_8)
description: References: VS Fonov, AC Evans, K Botteron, CR Almli, RC McKinstry, DL Collins and BDCG, Unbiased average age-appropriate atlases for pediatric studies, NeuroImage, Volume 54, Issue 1, January 2011, ISSN 1053–8119. (https://doi.org/10.1016/j.neuroimage.2010.07.033)
description: References: VS Fonov, AC Evans, RC McKinstry, CR Almli and DL Collins, Unbiased nonlinear average age-appropriate brain templates from birth to adulthood, NeuroImage, Volume 47, Supplement 1, July 2009, Page S102 Organization for Human Brain Mapping 2009 Annual Meeting. (https://doi.org/10.1016/S1053-8119(09)70884-5)
description: References: B Fischl, FreeSurfer, NeuroImage, vol. 62, no. 2, pp. 774–781, 2012. (https://doi.org/10.1016/j.neuroimage.2012.01.021)
description: References: RS Desikan, F Ségonne, B Fischl, BT Quinn, BC Dickerson, D Blacker, RL Buckner, AM Dale, RP Maguire, BT Hyman, MS Albert, RJ Killiany, An automated labeling system for subdividing the human cortex on MRI scans into gyral based regions of interest, NeuroImage, vol. 31, no. 3, pp. 968–980, 2006. (https://doi.org/10.1016/j.neuroimage.2006.01.021)
description: References: A Klein, J Tourville, 101 labeled brain images and a consistent human cortical labeling protocol, Front Neurosci, vol. 6, Dec 2012. (https://doi.org/10.3389/fnins.2012.00171)
description: References: C Destrieux, B Fischl, A Dale, E Halgren, Automatic parcellation of human cortical gyri and sulci using standard anatomical nomenclature, NeuroImage, vol. 53, no. 1, pp. 1–15, 2010. (https://doi.org/10.1016/j.neuroimage.2010.06.010)
DOI: 10.15468/dl.2vcu3a
title: Occurrence Download

description: A dataset containing 671 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Malacomys edwardsi Rochebrune, 1885",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 671 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033750-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26507098
title: Processed Seurat Objects for Localized Marker Detector (Cluster-Independent Multiscale Marker Identification inSingle-cell RNA-seq Data using Localized Marker Detector)

description: These are processed Seurat objects for the biological datasets in Localized Marker Detector (https://github.com/KlugerLab/LocalizedMarkerDetector):<br><b>Tabular Muris bone marrow dataset (FACS-based and Droplet-based)</b>We used publicly available scRNA-seq mouse bone marrow datasets (FACS and Droplet-based) from the Tabular Muris Consortium, which were already pre-processed and annotated according to their workflow. In addition, we applied ALRA imputation to generate a denoised assay <code>alra</code> and added several cell annotations: (1) Cell cycle annotation using <code>CellCycleScoring</code> with the updated 2019 cell cycle gene set; (2) Module Activity Scores for the gene modules listed in our paper.<b>Mouse embryo skin dataset</b>We separated dermal cell populations from newly collected mouse embryo skin samples (aligned to the mouse genome mm10 using CellRanger (v.6.1.2)). Cells from the wildtype and SmoM2YFP mutant (SmoM2) for two consecutive days (embryonic day 13.5 and 14.5) were pooled for analysis. To avoid batch effects from pooling or integrating, we analyzed each condition separately: E13.5 SmoM2, E13.5 WT, E14.5 SmoM2, and E14.5 WT. For each condition, we performed standard normalization, selected the top 2,000 highly variable genes, and scaled the data using the Seurat v4 R package. We then applied PCA, retaining the number of PCs determined by the elbow plot: E13.5 SmoM2 (14 PCs), E13.5 WT (12 PCs), E14.5 SmoM2 (12 PCs), and E14.5 WT (11 PCs).<br>
DOI: 10.6084/m9.figshare.26507098.v2
title: Processed Seurat Objects for Localized Marker Detector (Cluster-Independent Multiscale Marker Identification inSingle-cell RNA-seq Data using Localized Marker Detector)

description: These are processed Seurat objects for the biological datasets in Localized Marker Detector (https://github.com/KlugerLab/LocalizedMarkerDetector):<br><b>Tabular Muris bone marrow dataset (FACS-based and Droplet-based)</b>We used publicly available scRNA-seq mouse bone marrow datasets (FACS and Droplet-based) from the Tabular Muris Consortium, which were already pre-processed and annotated according to their workflow. In addition, we applied ALRA imputation to generate a denoised assay <code>alra</code> and added several cell annotations: (1) Cell cycle annotation using <code>CellCycleScoring</code> with the updated 2019 cell cycle gene set; (2) Module Activity Scores for the gene modules listed in our paper.<b>Mouse embryo skin dataset</b>We separated dermal cell populations from newly collected mouse embryo skin samples (aligned to the mouse genome mm10 using CellRanger (v.6.1.2)). Cells from the wildtype and SmoM2YFP mutant (SmoM2) for two consecutive days (embryonic day 13.5 and 14.5) were pooled for analysis. To avoid batch effects from pooling or integrating, we analyzed each condition separately: E13.5 SmoM2, E13.5 WT, E14.5 SmoM2, and E14.5 WT. For each condition, we performed standard normalization, selected the top 2,000 highly variable genes, and scaled the data using the Seurat v4 R package. We then applied PCA, retaining the number of PCs determined by the elbow plot: E13.5 SmoM2 (14 PCs), E13.5 WT (12 PCs), E14.5 SmoM2 (12 PCs), and E14.5 WT (11 PCs).<br>
DOI: 10.6084/m9.figshare.26507098.v1
title: Processed Seurat Objects for Localized Marker Detector (LMD: Multiscale Marker Identification in Single-cell RNA-seq Data)

description: These are processed Seurat objects for the biological datasets in Localized Marker Detector (https://github.com/KlugerLab/LocalizedMarkerDetector):<br><b>Tabular Muris bone marrow dataset (FACS-based and Droplet-based)</b>We used publicly available scRNA-seq mouse bone marrow datasets (FACS and Droplet-based) from the Tabular Muris Consortium, which were already pre-processed and annotated according to their workflow. In addition, we applied ALRA imputation to generate a denoised assay <code>alra</code> and added several cell annotations: (1) Cell cycle annotation using <code>CellCycleScoring</code> with the updated 2019 cell cycle gene set; (2) Module Activity Scores for the gene modules listed in our paper.<b>Mouse embryo skin dataset</b>We separated dermal cell populations from newly collected mouse embryo skin samples (aligned to the mouse genome mm10 using CellRanger (v.6.1.2)). Cells from the wildtype and SmoM2YFP mutant (SmoM2) for two consecutive days (embryonic day 13.5 and 14.5) were pooled for analysis. To avoid batch effects from pooling or integrating, we analyzed each condition separately: E13.5 SmoM2, E13.5 WT, E14.5 SmoM2, and E14.5 WT. For each condition, we performed standard normalization, selected the top 2,000 highly variable genes, and scaled the data using the Seurat v4 R package. We then applied PCA, retaining the number of PCs determined by the elbow plot: E13.5 SmoM2 (14 PCs), E13.5 WT (12 PCs), E14.5 SmoM2 (12 PCs), and E14.5 WT (11 PCs).<b>Note</b>: This dataset is available from the corresponding authors upon reasonable request.<br>
DOI: 10.5281/zenodo.15633312
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250610o Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250610o Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15633313
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250610o Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250610o Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.15468/dl.2556at
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hyperolius pickersgilli Raw, 1982",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1332 -20.158,25.5395 -23.2724,25.5395 -24.0715,30.5701 -24.0715,30.5701 -20.3186,29.6496 -19.6123,28.947 -19.4003,28.1821 -19.4609,27.6072 -19.7214,27.1332 -20.158))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033751-250525065834625/datasets/export for details.
DOI: 10.15468/dl.s87vef
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potamothrix bedoti (Piguet, 1913)"
 ]
}

 The dataset includes 315 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033753-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u4mn5f
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (India, China, Myanmar, Nepal, Bhutan, Bangladesh, Pakistan, Afghanistan)",
 "TaxonKey is Gonepteryx rhamni (Linnaeus, 1758)"
 ]
}

 The dataset includes 73 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033754-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.