cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20237129.v1
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: Pollen and spores
DOI: 10.6084/m9.figshare.20237132.v1
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: c13 data
DOI: 10.6084/m9.figshare.20237135
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: Microplankton data
DOI: 10.6084/m9.figshare.20237135.v1
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: Microplankton data
DOI: 10.6084/m9.figshare.20237138
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: Microplankton data
DOI: 10.6084/m9.figshare.20237138.v1
title: Palynofloras, paleoenvironmental change and the inception of the Paleocene Eocene Thermal Maximum. The record of the Forties Fan, Sele Formation, North Sea Basin

description: Microplankton data
DOI: 10.6084/m9.figshare.20072804
title: Supplementary Material for: Exposure to Air Pollution and Survival in follow-up After Hepatocellular Carcinoma

description: Introduction: Air pollutants are classified as carcinogens by the International Agency for Research on Cancer. Long-term exposure to ambient particulate matter with an aerodiameter of 2.5 µm or lower (PM2.5) has been reported to be linked with increased mortality due to hepatocellular carcinoma (HCC). However, the effects of air pollutants other than PM2.5 on HCC-related mortality have not been fully investigated. Accordingly, we conducted this study to assess the effect of long-term exposure to air pollutants (PM2.5 and nitrogen dioxide [NO2]) on HCC-related mortality. Method: In 2005, the Taiwan Liver Cancer Network (TLCN) was established by the National Research Program for Genomic Medicine to recruit liver cancer patients from 5 major medical centers in northern, central, and southern Taiwan. The TLCN had successfully recruited 9,344 patients by the end of 2018. In this study, we included 1,000 patients randomly sampled from the TLCN to assess the effect of exposure to air pollutants on HCC mortality after HCC diagnosis. Daily averages of PM2.5 and NO2 concentrations were retrieved from 77 air quality monitoring stations and interpolated to the townships of patients’ residence by using the Kriging method. The effect of air pollutants on HCC survival was assessed using a Cox proportional hazards model. Results: A total of 940 patients were included in the analysis. After adjusting for potential confounders and mutually adjusting for co-pollutants, we observed that the hazards ratio (95% confidence interval) for HCC-related mortality for every 1 μg/m3 increase in PM2.5 concentration was 1.11 (1.08-1.14), and that for every 1-ppb increase in NO2 concentration was 1.08 (1.03- 1.13). Conclusion: Our study suggests that long-term exposure to PM2.5 and NO2 was associated with decreased survival time in patients with HCC in Taiwan.
DOI: 10.6084/m9.figshare.20072804.v1
title: Supplementary Material for: Exposure to Air Pollution and Survival in follow-up After Hepatocellular Carcinoma

description: Introduction: Air pollutants are classified as carcinogens by the International Agency for Research on Cancer. Long-term exposure to ambient particulate matter with an aerodiameter of 2.5 µm or lower (PM2.5) has been reported to be linked with increased mortality due to hepatocellular carcinoma (HCC). However, the effects of air pollutants other than PM2.5 on HCC-related mortality have not been fully investigated. Accordingly, we conducted this study to assess the effect of long-term exposure to air pollutants (PM2.5 and nitrogen dioxide [NO2]) on HCC-related mortality. Method: In 2005, the Taiwan Liver Cancer Network (TLCN) was established by the National Research Program for Genomic Medicine to recruit liver cancer patients from 5 major medical centers in northern, central, and southern Taiwan. The TLCN had successfully recruited 9,344 patients by the end of 2018. In this study, we included 1,000 patients randomly sampled from the TLCN to assess the effect of exposure to air pollutants on HCC mortality after HCC diagnosis. Daily averages of PM2.5 and NO2 concentrations were retrieved from 77 air quality monitoring stations and interpolated to the townships of patients’ residence by using the Kriging method. The effect of air pollutants on HCC survival was assessed using a Cox proportional hazards model. Results: A total of 940 patients were included in the analysis. After adjusting for potential confounders and mutually adjusting for co-pollutants, we observed that the hazards ratio (95% confidence interval) for HCC-related mortality for every 1 μg/m3 increase in PM2.5 concentration was 1.11 (1.08-1.14), and that for every 1-ppb increase in NO2 concentration was 1.08 (1.03- 1.13). Conclusion: Our study suggests that long-term exposure to PM2.5 and NO2 was associated with decreased survival time in patients with HCC in Taiwan.
DOI: 10.5255/ukda-sn-855810
title: Reasons for Failing to Ratify Certain Occupational Health and Safety Related International Labour Organisation Conventions, 2017-2021

description: By the best estimates around 140 people die day every day as result of injuries sustained at work or as a result of illnesses contracted as a direct result of work. That is 50,000 people a year. Millions live with work related injuries and illnesses both mental and physical while many, as yet unaware that they have been exposed to damaging substances at work, will develop debilitating symptoms as a result.. The data collection consists of information supplied following Freedom of information requests made to the Health and Safety Executive; Department of Work and Pensions and the Department for Business, Energy and Industrial Strategy regarding reasons for failing to ratify certain occupational health and safety related International Labour Organisation Conventions.
DOI: 10.6084/m9.figshare.20237091
title: NCFs of the array used as examples in the paper

description: NCFs of the array used as examples in the paper
DOI: 10.5281/zenodo.4943234
title: Supplementary Data Set for "Seeds of imperfection rule the mesocrystalline disorder in natural anhydrite single crystals"

description: Complete data sets: 1. DATA_SAXS_WAXS.zip - raw and reduced SAXS and WAXS measurements. NXS format and metadata 2. M-ERSC2020110901CT.zip - raw X-ray microtomography dataset. TIFF format and metadata. 3. Video_1_CT_3D_overview_XY_rotation.avi - uncompressed video 4. Video_2_CT_3D_overview_ZX_rotation.avi - uncompressed video 5. Video_3_CT_3D_internal_structure_XY_rotation.avi - uncompressed video
DOI: 10.5281/zenodo.4943233
title: Supplementary Data Set for "Seeds of imperfection rule the mesocrystalline disorder in natural anhydrite single crystals"

description: Complete data sets: 1. DATA_SAXS_WAXS.zip - raw and reduced SAXS and WAXS measurements. NXS format and metadata 2. M-ERSC2020110901CT.zip - raw X-ray microtomography dataset. TIFF format and metadata. 3. Video_1_CT_3D_overview_XY_rotation.avi - uncompressed video 4. Video_2_CT_3D_overview_ZX_rotation.avi - uncompressed video 5. Video_3_CT_3D_internal_structure_XY_rotation.avi - uncompressed video
DOI: 10.5281/zenodo.5905938
title: The EWAS Catalog manuscript: Underlying data

description: Epigenome-wide association studies (EWAS) of 40 traits were conducted using publically available data from the Gene Expression Omnibus (GEO) online repository. These results were uploaded to The EWAS Catalog: http://www.ewascatalog.org/. The table presented here represents the underlying data in The EWAS Catalog manuscript and contains the traits along with the corresponding GEO accession numbers and PubMed IDs.
DOI: 10.5281/zenodo.5905937
title: The EWAS Catalog manuscript: Underlying data

description: Epigenome-wide association studies (EWAS) of 40 traits were conducted using publically available data from the Gene Expression Omnibus (GEO) online repository. These results were uploaded to The EWAS Catalog: http://www.ewascatalog.org/. The table presented here represents the underlying data in The EWAS Catalog manuscript and contains the traits along with the corresponding GEO accession numbers and PubMed IDs.
DOI: 10.25402/fon.20237217
title: Supplementary Table – Statins increase pathological response in locally advanced rectal cancer treated with chemoradiation: a multicenter experience

description: Table S1. Univariate analysis
DOI: 10.25402/fon.20237217.v1
title: Supplementary Table – Statins increase pathological response in locally advanced rectal cancer treated with chemoradiation: a multicenter experience

description: Table S1. Univariate analysis
DOI: 10.25402/fon.20237301
title: Supplementary Table – The first Middle East and North Africa expert consensus recommendations for the management of advanced colorectal cancer

description: The MENA consensus recommendations for the management of patients with advanced CRC A=Agree completely
DOI: 10.25403/upresearchdata.20227740
title: Protein quality in feedlot diets

description: The datasets used to compile the results for the feedlot MSc study titled 'Effect of dietry protein quality and rumen protected amino acid supplemntation on performance and carcass characteristics of feedlot cattle', researching protein quality in feedlot diets. Slaughter data file depict the carcass data of the feedlot steers. Feed conversation ratio depicts each pens feed intake and the calculated feed conversion ratio over a certain time period. Blood analysis collate the blood serum amino acid profile, urea and creatinine levels of feedlot steers over different time periods. Average daily gain determine the feedlot steers average daily gain (ADG) based on their weight over a certain period of time.
DOI: 10.25403/upresearchdata.20227740.v1
title: Protein quality in feedlot diets

description: The datasets used to compile the results for the feedlot MSc study titled 'Effect of dietry protein quality and rumen protected amino acid supplemntation on performance and carcass characteristics of feedlot cattle', researching protein quality in feedlot diets. Slaughter data file depict the carcass data of the feedlot steers. Feed conversation ratio depicts each pens feed intake and the calculated feed conversion ratio over a certain time period. Blood analysis collate the blood serum amino acid profile, urea and creatinine levels of feedlot steers over different time periods. Average daily gain determine the feedlot steers average daily gain (ADG) based on their weight over a certain period of time.
DOI: 10.5281/zenodo.6801406
title: Large excess capacity of glycolytic enzymes in Saccharomyces cerevisiae under glucose-limited conditions

description: Computational models and figure data for the publication "Large excess capacity of glycolytic enzymes in <em>Saccharomyces cerevisiae </em>under glucose-limited conditions" (to be submitted). Data put together by Pranas Grigaitis, p.grigaitis [at] vu.nl. <em>Abstract</em> In Nature, microbes live in very nutrient-dynamic environments. Rapid scavenging and consumption of newly introduced nutrients therefore offer a way to outcompete competitors. This may explain the observation that many microorganisms, including the budding yeast <em>Saccharomyces cerevisiae,</em> appear to keep “excess” glycolytic proteins at low growth rates, i.e. the maximal capacity of glycolytic enzymes (largely) exceeds the actual flux through the enzymes. However, such a strategy requires investment into preparatory protein expression that may come at the cost of current fitness. Moreover, at low nutrient levels, enzymes cannot operate at high saturation, and overcapacity is poorly defined without taking enzyme kinetics into account. Here we use computational modeling to suggest that in yeast the overcapacity of the glycolytic enzymes at low specific growth rates is a genuine excess, rather than the optimal enzyme demand dictated by enzyme kinetics. We found that the observed expression of the glycolytic enzymes did match the predicted optimal expression when <em>S. cerevisiae</em> exhibits mixed respiro-fermentative growth, while the expression of tricarboxylic acid cycle enzymes always follows the demand. Moreover, we compared the predicted metabolite concentrations with the experimental measurements and found the best agreement in glucose-excess conditions. We argue that the excess capacity of glycolytic proteins in glucose-scarce conditions is an adaptation of <em>S. cerevisiae</em> to fluctuations of nutrient availability in the environment.
description: The authors acknowledge the funding by Marie Skłodowska-Curie Actions ITN "SynCrop" (grant agreement No 764591) and NWO (NWO ERA-IB-2, project No 053.80.722).
DOI: 10.5281/zenodo.6801405
title: Large excess capacity of glycolytic enzymes in Saccharomyces cerevisiae under glucose-limited conditions

description: Computational models and figure data for the publication "Large excess capacity of glycolytic enzymes in <em>Saccharomyces cerevisiae </em>under glucose-limited conditions" (to be submitted). Data put together by Pranas Grigaitis, p.grigaitis [at] vu.nl. <em>Abstract</em> In Nature, microbes live in very nutrient-dynamic environments. Rapid scavenging and consumption of newly introduced nutrients therefore offer a way to outcompete competitors. This may explain the observation that many microorganisms, including the budding yeast <em>Saccharomyces cerevisiae,</em> appear to keep “excess” glycolytic proteins at low growth rates, i.e. the maximal capacity of glycolytic enzymes (largely) exceeds the actual flux through the enzymes. However, such a strategy requires investment into preparatory protein expression that may come at the cost of current fitness. Moreover, at low nutrient levels, enzymes cannot operate at high saturation, and overcapacity is poorly defined without taking enzyme kinetics into account. Here we use computational modeling to suggest that in yeast the overcapacity of the glycolytic enzymes at low specific growth rates is a genuine excess, rather than the optimal enzyme demand dictated by enzyme kinetics. We found that the observed expression of the glycolytic enzymes did match the predicted optimal expression when <em>S. cerevisiae</em> exhibits mixed respiro-fermentative growth, while the expression of tricarboxylic acid cycle enzymes always follows the demand. Moreover, we compared the predicted metabolite concentrations with the experimental measurements and found the best agreement in glucose-excess conditions. We argue that the excess capacity of glycolytic proteins in glucose-scarce conditions is an adaptation of <em>S. cerevisiae</em> to fluctuations of nutrient availability in the environment.
description: The authors acknowledge the funding by Marie Skłodowska-Curie Actions ITN "SynCrop" (grant agreement No 764591) and NWO (NWO ERA-IB-2, project No 053.80.722).
DOI: 10.5517/ccnbjp5
title: CCDC 605947: Experimental Crystal Structure Determination

description: Related Article: M.Flores-Alamo, M.Benitez-Montelongo, R.Moreno-Esparza, M.A.Iglesias-Arteaga|2006|Acta Crystallogr.,Sect.E:Struct.Rep.Online|62|o2805|doi:10.1107/S1600536806020265
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.20237097
title: EXPERIENCES OF MEDICAL AND DENTAL STUDENTS OF PAKISTAN DURING COVID-19 PANDEMIC LOCKDOWN: A QUALITATIVE STUDY

description: Themes and subthemes of qualitative research project to find out experiences of medical and dental students of pakistan during lockdown of COVID 19 pandemic.
DOI: 10.6084/m9.figshare.20237097.v1
title: EXPERIENCES OF MEDICAL AND DENTAL STUDENTS OF PAKISTAN DURING COVID-19 PANDEMIC LOCKDOWN: A QUALITATIVE STUDY

description: Themes and subthemes of qualitative research project to find out experiences of medical and dental students of pakistan during lockdown of COVID 19 pandemic.
DOI: 10.5281/zenodo.6801466
title: Co-located Multi-device Audio Experiences Dataset

description: This dataset contains the survey responses obtained from the survey on co-located multi-device audio experiences, in the form of a .csv file.
DOI: 10.3886/e117882v1-122580
title: Replication Data for: The Separation and Reunification of Germany: Rethinking a Natural Experiment Interpretation of the Enduring Effects of Communism

description: German separation in 1949 into a communist East and a capitalist West and their reunification in 1990 are commonly described as a natural experiment to study the enduring effects of communism. We show in three steps that the populations in East and West Germany were far from being randomly selected treatment and control groups. First, using pre-World War II data, the later border is already visible in many socio-economic characteristics. Second, World War II and the subsequent occupying forces affected East and West differently. Third, a selective fifth of the population fled from East to West Germany before the building of the Wall in 1961. In light of our findings, we propose a more cautious interpretation of the extensive literature on the enduring effects of communist systems on economic outcomes, political preferences, cultural traits, and gender roles. <br><br>
DOI: 10.6084/m9.figshare.20236794
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 171)

description: There are 17 files in this dataset. This is the 171st part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20236794.v1
title: Polyp-canal reconstruction reveals evolution towards complexity in corals (Dataset Part 171)

description: There are 17 files in this dataset. This is the 171st part of this dataset. The <em>A. millepora</em>, <em>A. muricata</em>,<em> C. vaughani</em>,<em> M. capricornis</em>, <em>M. foliosa</em>,<em> P. damicornis</em>, <em>P. meandrina</em>,<em> P. verrucosa</em>, and<em> S. pistillata</em> samples were collected from the Xisha Islands (2018); the <em>A. digitifera</em>, <em>F. speciosa </em>(2008), and<em> M. turgescens</em> (2017) samples were collected from the Nansha Islands; the <em>P. lutea</em> samples were collected from the Weizhou Islands (2017); the <em>G. fascicularis</em>, and<em> M. stellata </em>samples were collected from the Gaven Reef (2017); the <em>A. myriophthalma</em> samples were collected from the Reed Tablemount (2017); the <em>P. sinensis</em> samples were collected from the Subi Reef (2017). All samples, which occurred in large arborescent colonies forming thickets, were found in tropical shallow reefs of the marine neritic zone, from depths of about 5 to 10 m. The daily mean temperature was between 23.2 and 29.2°C. The coral samples were kept whole and housed in our laboratory coral tank, where all conditions were simulated to reflect those of their habitat in the South China Sea. These samples were kept in the tank for about one to three months before HRCT analysis.
DOI: 10.6084/m9.figshare.20237386
title: Supplementary tables, figures, captions, data, scripts from Exceptional diversity and selection pressure on coronavirus host receptors in bats compared to other mammals

description: This zipped folder contains all of the supplementary tables and figures, a document of captions for the supplementary files, and the genetic alignments and R scripts used in the work.
DOI: 10.6084/m9.figshare.20227557
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled " Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.20227557.v2
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area

description: This is the supplementary information for the manuscript titled " Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial area"
DOI: 10.6084/m9.figshare.20227557.v1
title: Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial discharge area

description: This is the supplementary information for the manuscript titled " Distribution, chemical speciation and human health risk assessment of metals in soil particle size fractions from an industrial discharge area"
DOI: 10.6084/m9.figshare.20237413
title: Supplementary Table 7 - Full list of compounds from Exploitation of an ancestral pheromone biosynthetic pathway contributes to diversification in <i>Heliconius</i> butterflies

description: Full list of compounds detected in the androconial extracts, with amounts reported as average amount (nmol) per species. Included here are also species for which Welch's two-sample t-test could not be applied: <i>P. dido, H. antiochus, H. burneyi, H. eleuchia</i> and <i>H. timareta</i>.The entire list makes up dataset A, while compounds with bold names are those that are present in significantly higher amounts in the androconia of at least one species compared to the control tissue, making up dataset B. Bolded concentrations represent the significant compounds for each species. Only these values were retained in dataset C.
DOI: 10.6084/m9.figshare.20237413.v1
title: Supplementary Table 7 - Full list of compounds from Exploitation of an ancestral pheromone biosynthetic pathway contributes to diversification in <i>Heliconius</i> butterflies

description: Full list of compounds detected in the androconial extracts, with amounts reported as average amount (nmol) per species. Included here are also species for which Welch's two-sample t-test could not be applied: <i>P. dido, H. antiochus, H. burneyi, H. eleuchia</i> and <i>H. timareta</i>.The entire list makes up dataset A, while compounds with bold names are those that are present in significantly higher amounts in the androconia of at least one species compared to the control tissue, making up dataset B. Bolded concentrations represent the significant compounds for each species. Only these values were retained in dataset C.