cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10408328
title: Data for: PHOSPHORYLATION OF RyR2 SIMULTANEOUSLY EXPANDS THE DYAD AND REARRANGES THE TETRAMERS

description: This is data that was used to generate the figures and tables for the Journal of General Physiology paper:PHOSPHORYLATION OF RyR2 SIMULTANEOUSLY EXPANDS THE DYAD AND REARRANGES THE TETRAMERS

The uploaded data was used to generate all the figures and tables in the paper.  

The directories for Figure 1 and Supplemental Figures 2-7 contain data that can be used with the RyRfit and the commercial Amira programs to provide the position, orientation and classifications of the RyR2 tetramers in those figures.  

The Excel file titled Junction_Lengths contains all of the data presented in Figure 2, Tables 1 and 2 and Supplementary Tables 1 and 2. 

The Excel file titled Nearest Neighbour Distances_Mice_Human_Rat was used to generate Figure 3D. 

The Excel file titled Nearest Neighbour Distances_Mutants and WTs file was used to generate Figures 3A and 3B, and Figures 4 and 5.
DOI: 10.6084/m9.figshare.24891807
title: Data of bike-sharing trip

description: Data of bike-sharing trip
DOI: 10.21227/3k9r-ws11
title: FastText classification

description: The CF algorithm is combined to generate personalized English text reading recommendations for various long-tail user groups. By optimizing the recommendation generation process, the recommendation accuracy of the model is enhanced, and the recommendation performance and user satisfaction of the English text reading recommendation system are improved. The Top-N algorithm model is compared with the algorithm model based on matrix decomposition in terms of recommendation accuracy and F-Measure value, and the advantages of the proposed algorithm model are proved.
DOI: 10.5281/zenodo.10417625
title: 2476 dust storms identified from MOC MDGMs in MY 24-28

description: This page archives data used in the following article:

 

Tian, Y., Li, B., Rong, Z. J., Qu, S. J., Chen, S. B. (2023). Martian Dust Storm Spatial-Temporal Analysis of Tentative Landing Areas forChina’s Tianwen-3 Mars Mission. Journal of Geophysical Research: Planets, under review.

 

It contains the occurrence time (Mars year, month, day, and Ls) and location (longitude, latitude) of 2476 dust storms identified in the study areas (Amazonis, Chryse and Utopia Planitiae) of the above article.
DOI: 10.5281/zenodo.10417626
title: 2476 dust storms identified from MOC MDGMs in MY 24-28

description: This page archives data used in the following article:

 

Tian, Y., Li, B., Rong, Z. J., Qu, S. J., Chen, S. B. (2023). Martian Dust Storm Spatial-Temporal Analysis of Tentative Landing Areas forChina’s Tianwen-3 Mars Mission. Journal of Geophysical Research: Planets, under review.

 

It contains the occurrence time (Mars year, month, day, and Ls) and location (longitude, latitude) of 2476 dust storms identified in the study areas (Amazonis, Chryse and Utopia Planitiae) of the above article.
DOI: 10.34740/kaggle/dsv/7257871
title: WallStreetBets 2022
DOI: 10.6084/m9.figshare.24412537.v1
title: Efficacy analysis of HIFU therapy for AWE

description: Investigate the short-term and long-term efficacy of high-intensity focused ultrasound (HIFU) therapy for abdominal wall endometriosis (AWE) and explore its potential influencing factors.
DOI: 10.5517/ccdc.csd.cc2g8ht2
title: CCDC 2272294: Experimental Crystal Structure Determination

description: Related Article: Jia-Wang Yuan, Qiu-Chen Peng, Jia-Cong Fu, Qi Yang, Zi-Ying Gao, Zhao-Yang Wang, Kai Li, Shuang-Quan Zang, Ben Zhong Tang|2023|J.Am.Chem.Soc.|145|27095|doi:10.1021/jacs.3c11027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2g8hv3
title: CCDC 2272295: Experimental Crystal Structure Determination

description: Related Article: Jia-Wang Yuan, Qiu-Chen Peng, Jia-Cong Fu, Qi Yang, Zi-Ying Gao, Zhao-Yang Wang, Kai Li, Shuang-Quan Zang, Ben Zhong Tang|2023|J.Am.Chem.Soc.|145|27095|doi:10.1021/jacs.3c11027
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24891882
title: fish swimming prediction model

description: Critical swimming speed (<i>U</i><sub><em>crit</em></sub>) is a key factor in assessing the swimming ability of fish in different flow conditions. However, the existing <i>U</i><sub><em>crit</em></sub> prediction models lack inconsistencies in unit and physical significance. We hypothesized that the thrust provided by fish to resist the force introduced by water flow at a critical swimming state was balanced and that the fish’s gravity was balanced with its buoyancy in water. Through mathematic derivation, we established a new <i>U</i><sub><em>crit</em></sub> prediction model and evaluated the influences of various factors on <i>U</i><sub><em>crit</em></sub> results. The new theoretical model considers <i>U</i><sub><em>crit</em></sub><i> </i>as a function of the comprehensive coefficient <i>α</i>, gravitational acceleration <i>g</i>, and body length <i>L</i>, and uses a unified expression <i>U</i><sub><em>crit</em></sub> <i>=α(gL)</i><sup><em> 0.5</em></sup> to predict the <i>U</i><sub><em>crit</em></sub> of fish. We have validated the model using previous research data and found that the predictive results of the new theoretical model are more consistent with other empirical models. This new model provides a universal <i>U</i><sub><em>crit</em></sub> prediction method for various fish species, addressing the issue of inconsistency in the application of experimental results by different researchers, and offering a solid reference for fish stocks protection, fishway construction, and habitat restoration.
DOI: 10.6084/m9.figshare.24891882.v1
title: fish swimming prediction model

description: Critical swimming speed (<i>U</i><sub><em>crit</em></sub>) is a key factor in assessing the swimming ability of fish in different flow conditions. However, the existing <i>U</i><sub><em>crit</em></sub> prediction models lack inconsistencies in unit and physical significance. We hypothesized that the thrust provided by fish to resist the force introduced by water flow at a critical swimming state was balanced and that the fish’s gravity was balanced with its buoyancy in water. Through mathematic derivation, we established a new <i>U</i><sub><em>crit</em></sub> prediction model and evaluated the influences of various factors on <i>U</i><sub><em>crit</em></sub> results. The new theoretical model considers <i>U</i><sub><em>crit</em></sub><i> </i>as a function of the comprehensive coefficient <i>α</i>, gravitational acceleration <i>g</i>, and body length <i>L</i>, and uses a unified expression <i>U</i><sub><em>crit</em></sub> <i>=α(gL)</i><sup><em> 0.5</em></sup> to predict the <i>U</i><sub><em>crit</em></sub> of fish. We have validated the model using previous research data and found that the predictive results of the new theoretical model are more consistent with other empirical models. This new model provides a universal <i>U</i><sub><em>crit</em></sub> prediction method for various fish species, addressing the issue of inconsistency in the application of experimental results by different researchers, and offering a solid reference for fish stocks protection, fishway construction, and habitat restoration.
DOI: 10.5281/zenodo.10403882
title: Dataset for 'Phylogenetic Diversity vs H-Index – does genetics or culture lead conservation science?'
DOI: 10.5281/zenodo.10403883
title: Dataset for 'Phylogenetic Diversity vs H-Index – does genetics or culture lead conservation science?'
DOI: 10.5281/zenodo.10421022
title: Daxing'anling fire bases
DOI: 10.5281/zenodo.10421023
title: Daxing'anling fire bases
DOI: 10.5281/zenodo.10421019
title: Rock Glacier Inventory and Climate Data from Jhelum Basin, Kashmir Himalaya, India

description: The data set contains satellite, climate and in situ observations of rock glaciers Jhelum Basin, Kashmir Himalaya, India used in Remya et al. (2023). A framework to identify rock glaciers and model mountain permafrost in the Jhelum Basin, Kashmir Himalaya, India. Earth and Space Science, 10, e2023EA003170. https://doi.org/10.1029/2023EA003170
DOI: 10.5066/p98q26rn
title: Electrical resistivity tomography, electromagnetic induction, and ultraviolet optical scanning tool data collected at Malmstrom Air Force Base, Great Falls, Montana, August 28–August 31, 2023

description: The U.S. Geological Survey (USGS), in cooperation with the U.S. Air Force Civil Engineer Center (USAF/CEC), conducted a pilot study at Malmstrom Air Force Base (MAFB) to evaluate the utility of two non-invasive geophysical techniques for detecting hydrocarbons in subsurface materials. Electrical resistivity tomography (ERT) and electromagnetic induction (EMI) surveys were completed August 28–29, 2023, along 7 transects overtop contaminated and uncontaminated sites for comparison. Additionally, the USGS completed ultraviolet optical scanning tool (UVOST) soundings and collected soil samples from temporary boreholes to validate geophysical survey results. A total of 11 UVOST soundings and 7 boreholes were completed August 28–31, 2023. Two soil samples from various depths were collected from each borehole for a total of 14 samples. Ten quality assurance/quality control samples consisting of 2 field equipment blanks (1 per day), 4 replicate soil samples (2 per day), and 4 trip blanks (2 per day). Soils were tested for volatile organic compounds, semi-volatile organic compounds, gasoline range organics, diesel range organics, metals, and per- and polyfluorinated substances (PFAS/PFOA).
DOI: 10.5281/zenodo.10421017
title: Peel-Harvey catchment-estuary dataset (1970-2050)
title: ARC Linkage Project LP150100451

description: Release of the Peel ARC project data and model assets: Balancing estuarine and societal health in a changing environment
DOI: 10.5281/zenodo.10421018
title: Peel-Harvey catchment-estuary dataset (1970-2050)
title: ARC Linkage Project LP150100451

description: Release of the Peel ARC project data and model assets: Balancing estuarine and societal health in a changing environment
DOI: 10.6084/m9.figshare.23291972.v6
title: Urbanity Colab Data Files

description: Sample subzone files for Urbanity colab demo. Data obtained from GADM database.
DOI: 10.6084/m9.figshare.24891906
title: Lima et al 2023 BIP - SUPPLEMENTARY MATERIALS.pdf

description: Small-scale fishing in the floodplains of the Amazon basin has intensified, with gillnets being one of the main types of tackle used. In this study, we evaluated the length structure of fish species in a floodplain lake of the Madeira River basin, emphasizing the selectivity of the nets in the main species caught. The fisheries were collected in periods of high and low water, with nets of mesh sizes of 40, 60, 80, 100, 120, and 160 mm. Tests between the periods and also comparing the meshes were performed, and the parameters of the selectivity curves estimated with the Share Each Length Catch Total calculation code. Records of 17 new maximum lengths were presented. Among the 12 most abundant species, the selectivity of the nets in the modal lengths for <i>Anchovia surinamensis</i> were 13.3, 19.9, 26.6, and 33.2 cm in the nets with mesh sizes of 40, 60, 80, and 100 mm, respectively. In the three smallest mesh sizes, the values for <i>Potamorhina altamazonica</i> were 12.7, 19, and 25.3 cm, and for <i>Pellona flavipinnis </i>values were 15.4, 23.2, and 30.9 cm. In the two smallest mesh sizes, the following values were presented for the species <i>Potamorhina latior </i>(12.9 and 19.4 cm), <i>Potamorhina rutiloides </i>(11.3 and 16.9 cm), <i>Triportheus elongatus</i> (19.7 and 29.5 cm), <i>Triportheus flavus </i>(14.1 and 21.1 cm), and Pimelodus <i>blochii</i> (15.5 and 23 cm). The study confirmed the rich presence of Characiformes in the floodplain lake that was surveyed. The catches are effectively composed of juvenile fish. Among the highlighted species, the 40-mm mesh is not recommended for the species <i>P. altamazonica, T. flavus, and P. flavipinnis. </i>
DOI: 10.25345/c5tt4g43s
title: MassIVE MSV000093717 - Immunoprecipitated PTPN22 Phosphoproteomics from Jurkat Cells
title: 3x FLAG tagged PTPN22 were immunoprecipitated from Jurkat cells stimulated by TCR for 5min, and the proteins were eluted by FLAG peptides. This study aims to explore the phosphorylation sites on PTPN22 phosphatase, identifying two phosphorylation sites Ser325 and Ser449.
DOI: 10.25345/c5q23rb0f
title: MassIVE MSV000093718 - Global phosphoproteomics for CRISPR/Cas9 mediated PTPN22 Ser325 mutagenesis on Jurkat cells
title: LQF of 3x FLAG PTPN22 WT Jurkat cells compared to S325A and S325E KI mutant Jurkat cells. WT or KI lines were stimulated with or without TCR engagement for 5 min.
DOI: 10.5517/ccdc.csd.cc2ghyyw
title: CCDC 2279459: Experimental Crystal Structure Determination

description: Related Article: Sribash Das, Rama Karn, Mohit Kumar, Soumya Srimayee, Debasis Manna|2023|Org.Biomol.Chem.|22|114|doi:10.1039/D3OB01826A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2ghyzx
title: CCDC 2279460: Experimental Crystal Structure Determination

description: Related Article: Sribash Das, Rama Karn, Mohit Kumar, Soumya Srimayee, Debasis Manna|2023|Org.Biomol.Chem.|22|114|doi:10.1039/D3OB01826A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2dlvql
title: CSD 2222660: Experimental Crystal Structure Determination

description: Related Article: R.J.C. Locke, M. Weis, T. Schleid|2023|IUCrData|8|x230591|doi:10.1107/S2414314623005916
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.24866022.v1
title: Source data.xlsx

description: We present a self-driven long-range electrophoresis of organic nanocrystals facilitated by a rationally designed photogenerated outer electric field (OEF) on their surface. Employing perylene-3,4,9,10-tetracarboxylic dianhydride (PTCDA) molecular nanocrystals as a model system, we demonstrate that a directional OEF with an intensity of 13.6-0.4 kV m-1 across a range of 25-200 μm. This OEF-driven targeted electrophoresis of PTCDA nanocrystals onto the microplastic surface enhances the activity for subsequent decomposition of microplastics (196.8 mg h-1) into CO2 by solid-solid catalysis. As supported by operando characterizations and theoretical calculations, the OEF surrounds PTCDA nanocrystals initially, directing from the electron-rich (0 1 1) to the hole-rich (1 12) surface. Upon surface charge modulation, the direction of OEF changes toward the solid substrate. The omnipresent OEF-driven electrophoretic effect in organic nanocrystals with anisotropic charge-enrichment characteristics indicates potential advancements in realizing effective solid-solid photocatalysis.
DOI: 10.25345/c5kd1qw8h
title: MassIVE MSV000093719 - Global phosphoproteomics for CRISPR/Cas9 mediated mutagenesis on Jurkat cells
title: This study aims to investigate the phosphorylation profiles of TCR signaling adapters when the PTPN22 Ser449 was mutated to an alanine in Jurkat cells. PTPN22 WT or S449A KI Jurkat cells were stimulated by TCR for 0, 1 and 10min.
DOI: 10.5519/qd.v1ol64ya
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (27 records)
DOI: 10.5519/qd.yup5sx54
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.6084/m9.figshare.24891969
title: Functional spectra and space characteristics of birds in China

description: We selected functional indexes including morphological phenotype, dietary composition, fecundity, and space utilization to quantitatively evaluate functional strategies of birds in China. We then built functional spectra for birds in China and assessed functional spaces.
DOI: 10.6084/m9.figshare.24891969.v1
title: Functional spectra and space characteristics of birds in China

description: We selected functional indexes including morphological phenotype, dietary composition, fecundity, and space utilization to quantitatively evaluate functional strategies of birds in China. We then built functional spectra for birds in China and assessed functional spaces.
DOI: 10.5281/zenodo.10421024
title: Midway RSS-related files backup (Results, Part 2)
DOI: 10.5281/zenodo.10421025
title: Midway RSS-related files backup (Results, Part 2)
DOI: 10.5519/qd.4qa9nyg1
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (19 records)
DOI: 10.5281/zenodo.10421026
title: Midway RSS-related files backup (Results, Part 3)
DOI: 10.5281/zenodo.10421027
title: Midway RSS-related files backup (Results, Part 3)
DOI: 10.6084/m9.figshare.24579238.v1
title: Plant-level dataset of energy intensity and CO<sub>2</sub> emission of OPC cement in Guizhou of Southwest China 2019-2022

description: There are seven excel files in our dataset. The seven excel involve the details of clinker rotary kilns, yearly production of clinker and OPC cement products, fuel consumption and electricity consumption, total CO<sub>2</sub> emission of OPC cement product, energy intensity indexes of clinker and OPC cement product, utilization ratio of solid-waste in clinker and cement production, and CO<sub>2</sub> emission factors of OPC cement product.
DOI: 10.6084/m9.figshare.24579238.v2
title: Plant-level dataset of energy intensity and CO<sub>2</sub> emission of OPC cement in Guizhou of Southwest China 2019-2022

description: There are seven excel files in our dataset. The seven excel involve the details of clinker rotary kilns, yearly production of clinker and OPC cement products, fuel consumption and electricity consumption, total CO<sub>2</sub> emission of OPC cement product, energy intensity indexes of clinker and OPC cement product, utilization ratio of solid-waste in clinker and cement production, and CO<sub>2</sub> emission factors of OPC cement product.
DOI: 10.21947/1915018
title: AWAKEN Site A1 - LLNL Profiling Lidar (ZX300 #1381) / Raw Data

description: This dataset contains vertical profiling lidar data from AWAKEN site A1. This is the ZX300 unit #1381 lidar system. The .csv files are monthly data files with 10-min average data. The .zip files are daily high frequency data and zipped by month.
DOI: 10.5519/qd.yuuyqmo2
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (76 records)
DOI: 10.5519/qd.qj4mt13u
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (409 records)
DOI: 10.6084/m9.figshare.22580473
title: Global Urban Network SVI Data

description: This data set contains street view segmentation indices for 50 global cities. We employ Meta's Mask2Former approach (Cheng, 2022) for image segmentation. 
<br>
We obtain SVI from Mapillary which is the world's largest platform for free and open street view imagery (SVI). Till date, Mapillary's coverage has penetrated most global cities around the world.
Compared to other proprietary options such as Google Street View, Mapillary images are hosted on a CC-BY-SA 4.0 licence, which allows users to freely share, use, and adapt images.
<br>
Images are subsampled proportionately based on geographic tiling of each city's administrative boundary and filtered to remove non-frontal facing and non-daylight images.
<br>
<br>
DOI: 10.20383/102.0501
title: Underlying data for "Mechanisms of Dune Growth and Decay in Rivers" submitted to Geophysical Research Letters

description: This data set includes information needed to understand, evaluate, and build upon the manuscript "Mechanisms of Dune Growth and Decay in Rivers". The included bathymetric surveys show how dunes grow and decay through the 2012 flood in the Fraser river. Dunes grow as flood levels increase by amalgamating with smaller dunes once a flow threshold is passed. After amalgamation, changes to individual dunes are subtler and likely driven by changes to the flow field. As the flood recedes, smaller features appear on the backs of big dunes, reworking and flattening the bed. Small dunes on the backs of big dunes may be a signature of dune decay. Analysis of gauge data from Water Survey of Canada and the Canadian Hydrographic Survey, included here, show that growth by amalgamation and decay by secondary features occur at a common flow threshold. The results can be used to improve how we model floods and interpret fossilized dunes in the rock record on Earth and other planetary surfaces.
DOI: 10.5519/qd.731tg2bz
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2 records)
DOI: 10.5281/zenodo.10157892
title: Extreme Variability Quasars Catalog

description: We provide all 20,069 available spectral measurements of 14,012 EVQs selected in Ren et al. 2022. Repeated observed spectra of a same EVQ will have the same SDSS NAME with different spectral info (PLATE,MJD, and FIBER). We include the SPECPRIMARY flag to indicate if the spectrum is the best observation of this object. The unmeasurable parameters are set to -999. The errors are obtained from 100 iterations of Monte Carlo simulation.