cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1j3s0/1
title: Pre patient focus group 1

description: pre IDE implementation patient focus group no1
DOI: 10.5061/dryad.1j3s0/2
title: PFG2

description: pre IDE implementation patient focus group no2
DOI: 10.5061/dryad.1j3s0/3
title: PFG3

description: pre IDE implementation patient focus group no 3
DOI: 10.5061/dryad.1j3s0/4
title: PFG4

description: pre IDE implementation patient focus group no 4
DOI: 10.5061/dryad.1j3s0/5
title: pre ex interview p2

description: pre IDE implementation patient interview no 2
DOI: 10.5061/dryad.1j3s0/6
title: pre exercise interview patient 1

description: pre IDE implementation patient interview no 1
DOI: 10.5061/dryad.1rc64/1
title: Lecanora_layana_input_files

description: This is a zipped folder containing the molecular data alignment input files used in the phylogenetic analyses for this study.
DOI: 10.5061/dryad.2mk7k/1
title: Seward Peninsula Pond locations, physical data and zooplankton presence/absence

description: The file contains data for 345 persistent ponds on the Seward Peninsula, Alaska. Pond locations (Lat.,Long.), physical parameters (including pond areas and perimeters), and zooplankton presence/absences from the most recent sampling. Recently formed ponds are flagged as a "1" using the old_new variable.
DOI: 10.5061/dryad.2t99d/1
title: Embiratermes neotenicus COI haplotypes

description: Cytochrome oxidase I (COI) unique haplotypes for Embiratermes neotenicus samples. Sequence ID, country,	specimen voucher and GenBank accession number are indicated.
DOI: 10.5061/dryad.38600/1
title: Contrast Gain for UVS birds

description: The excel file contains contrast gain data that are reported in figures 3 and 4 in the main article. Data are tabulated for background (bg) and intra-plumage (intra) contrast during different viewing conditionas as shown in figure 2.
DOI: 10.5061/dryad.53vg0/1
title: Bacterial cover data

description: Bacterial cover of A. echinatior ants scored from 0-12. Each ant is identified by an ID and the host and donor colony noted. Each treatment was replicated and each sub colony harboured 4 ants. Bacterial cover was scored on day 1, 4, 8, 12 and 16 after eclosion, at the time of experimental infection with Escovopsis and 2 weeks post infection. From these scores the logistic growth rate was estimated and subsequently this rate was Box-Cox transformed. Some subcolonies were excluded from the analysis due to garden loss.
DOI: 10.5061/dryad.53vg0/2
title: Behaviour data

description: Behaviours performed by cross-fostered A. echinatior ants following experimental Escovopsis infection. For each sub-colony the frequency of behaviours performed by all individuals is noted, together with the proportion of time spent on each and the first four principal components following PCA. Some sub-colonies were excluded from the analysis due to garden loss.
DOI: 10.5061/dryad.581f3/1
title: Processed Illumina reads for Acanthurus reversus

description: Demultiplexed and quality filtered Illumina HiSeq2000 reads for all 9 Acanthurus reversus samples used in this study. These samples were used as input files for the Stacks denovo_map.pl pipeline.
DOI: 10.5061/dryad.581f3/2
title: Processed Illumina reads for Acanthurus olivaceus

description: Demultiplexed and quality filtered Illumina HiSeq 2000 reads for all 52 Acanthurus olivaceus samples used in this study. These samples were used as the input files for the Stacks denovo_map.pl pipeline.
DOI: 10.5061/dryad.581f3/3
title: All Loci Structure File
DOI: 10.5061/dryad.669r8/1
title: Composite data file for Punta Salinas and Monagas

description: Excel files. Ecological and reproductive data of Anolis cristatellus. Data collected in two field sites: Punta Salinas and Monagas, Puerto Rico. See 'Read me' files for more details
DOI: 10.5061/dryad.6c605/1
title: Modeling and molecular datasets for Parmotrema perforatum study

description: The data packet is a zipped folder that contains 1) a folder with all relevant Maxent modeling files including a ReadMe and 2) a folder with four input files used for molecular phylogenetic analyses conducted as part of the study.
DOI: 10.5061/dryad.77nm5/2
title: Supplementary Data File

description: The file presents data underlying the analyses for an article called  "Serum-free and Xenobiotic-free Preservation of Cultured Human Limbal Epithelial Cells" in preparation for publication in PlosOne. The file includes data on cell viability, epithelial and amniotic membrane thickness and expression of 11 different immunohistochemical markers (deltaNP63alpha, P63, Bmi1, C/ebpdelta, ABCG2, Connexin-43, Keratin-19, Keratin-3, PCNA, Caspase-3).
DOI: 10.5061/dryad.78kn3/1
title: hyena_locations

description: Spotted hyenas GPS locations
DOI: 10.5061/dryad.78kn3/2
title: elephant_carcasses

description: Elephant carcasses locations
DOI: 10.5061/dryad.78kn3/3
title: camera trap pictures

description: hyena camera trap pictures
DOI: 10.5061/dryad.7fd7p/1
title: Data for meta-analysis and synthesis of boreal edges

description: Data from each study is on a separate page, labelled with the study area and study number. Please see the article Table 2. On each page, data are at different distances from the edge along transects for different response variables. Please see the article Table S1 for details on sampling and data collection.
DOI: 10.5061/dryad.7k130/8
title: All primary data for Stepanyan et al (2015) Mol Ecol

description: Zip archive containing all primary data for Stepanyan et al (2015) Mol Ecol. Relates to Figure 1, Figure 2, Figure 3, Figure 4, Figure S1, Figure S2 and Figure S5.
DOI: 10.5061/dryad.7k824/10
title: data_file_10

description: data from clasper removal experiment (fem_treatment==female treatment; 'occ' for unmanipulated H. occisa female, 'dw' H. occisa female with experimentally darkened wings)
DOI: 10.5061/dryad.7k824/5
title: data_file_5

description: data from male tethering experiments for H. occisa territory holders (in 2012 includes whether transect is experimental ("U") or control ("L"))
DOI: 10.5061/dryad.7k824/6
title: data_file_6

description: data from male tethering experiments for H. titia territory holders
DOI: 10.5061/dryad.7k824/7
title: data_file_7

description: data from conspecific/heterospecific female tethering tests (terrSP=='o' for H. occisa and 't' for H. titia) in the early ('E') and late ('L') seasons (treatment==female species)
DOI: 10.5061/dryad.7k824/8
title: data_file_8

description: data from wing-darkening female tethering tests (terrSP=='o' for H. occisa and 't' for H. titia) in the early ('E') and late ('L') seasons (treatment==female treatment)
DOI: 10.5061/dryad.7k824/9
title: data_file_9

description: data from female tethering experiments conducted during H. titia removal experiment (transect=='upper' for experimental transect and 'lower' for control transect; treatment==female treatment: 'occ' for unmanipulated H. occisa female, 'dw' H. occisa female with experimentally darkened wings, 'tit' for H. titia female)
DOI: 10.5061/dryad.86750/3
title: Tribolium linear models R script

description: The R script used to fit linear models to the heterozygosities and plot the graph.
DOI: 10.5061/dryad.8gr58/1
title: Experimental data 'Hysteresis in a phytoplankton population'

description: Lightdata, cyanobacterial data and spectra of the experimental vessel in which a cyanbacterial population showed hysteretic behaviour as a result of light stress.
DOI: 10.5061/dryad.8qd33/1
title: MS PLoS dataset

description: Excel file extract from MS Access database describing clinical studies indentified in the review, and our assessment of their risk of bias
DOI: 10.5061/dryad.dn357/1
title: Time Calibrated Phylogenetic Trees of Cardueae (Exponential Prior)

description: 1000 fossil calibrated trees of the tribe Cardueae generated from BEAST using exponential prior distributions.
DOI: 10.5061/dryad.dn357/2
title: Time Calibrated Phylogenetic Trees of Cardueae (Lognormal Prior)

description: 1000 fossil calibrated trees of the tribe Cardueae generated from BEAST using lognormal prior distributions.
DOI: 10.5061/dryad.dn357/3
title: Combined Alignment File of Cardueae

description: Fasta file containing the combined alignments (ITS, matK, trnL) for the tribe Cardueae.
DOI: 10.5061/dryad.f4168/1
title: Supplementary1-Lee_et_al

description: Size measurement data of sponge specimens
DOI: 10.5061/dryad.gq264/1
title: Trichosurus_vulpecula_variables_data

description: Origin (i.e., wildlife collection) and registration numbers of all specimens used in the analyses, together with all extracted environmental covariates
DOI: 10.5061/dryad.m4vh4/1
title: phenotype

description: phenotype and experimental design
DOI: 10.5061/dryad.m4vh4/2
title: SVD genotype imputation

description: marker matrix for SVD imputation method
DOI: 10.5061/dryad.m4vh4/3
title: Mean genotype imputation

description: marker matrix for mean imputation method
DOI: 10.5061/dryad.nm0v0/1
title: Dataset of the automatic supporting system for regionalization of ventricular tachycardia exit site in implantable defibrillators

description: The data file “Regionalization.txt" consists of features (voltages and times) and the averaged beat waveform of the far-field and bipolar electrogram registered by implantable defibrillators during pacing in a pace-mapping protocol. In addition, the pacing site number, spatial position (half and coordinates), and type of tissue are also included. Details are provided in the manuscript and in the “Readme.txt” file.
DOI: 10.5061/dryad.qc431/1
title: Assignment of recordings to eliciting situations

description: Cases represent individual recordings. Columns C,E,G,I,K,M show numbers of raters who assigned each recording to pain (situation 1), play (2), isolation (3), reunion (4), demand for food (5) and after food (6), respectively. Columns D,F.H,J,L,N show the same as proportion out of the total of raters. Column 0 shows number of raters who assigned the eliciting situation for each recording. Columns P and S show average rating of Intensiveness and Pleasantness (not the same sample of raters, but similar sample size).
DOI: 10.5061/dryad.qc431/2
title: Recognition of infant vocalizations by raters

description: Cases represent individual raters. Column B-D demographic questions (sex: 1-female, 2-male; parenting: 2-childless). E-Q ratings of intensity of individual pain recordings, R - average intensity rating of pain recordings.S-AI and AJ same for play recordings etc.DD-DP ratings of pleasantness of individual pain recordings, DQ - average pleasantness rating of pain recordings. DR-EH and EI same for play recordings etc. HC-HO assignments of pain recordings to eliciting situations: pain (1), play (2), isolation (3), reunion (4), demand for food (5), after food (6). HP - proportion of correctly recognized recordings (assigned to pain). HQ-IG and IH - same for play recordings etc. LB - average of recognition efficiency. LC, LD - recognition efficiency for positive and negative situations, respectively.
DOI: 10.5061/dryad.rr4bj/10
title: Warneken&Rosati_Experiment7

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 7: Do chimpanzees selectively cook edible items?
DOI: 10.5061/dryad.rr4bj/11
title: Warneken&Rosati_Experiment8

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 8: Will chimpanzees transport food to cook it?
DOI: 10.5061/dryad.rr4bj/12
title: Warneken&Rosati_Experiment9

description: Subject data from behavioral experiment with chimpanzees in Warneken & Rosati, "Cognitive capacities for cooking in chimpanzees." Experiment 9: Will chimpanzees save their food for future cooking?
DOI: 10.5061/dryad.0f839/1
title: nuc_polys.fst

description: VCF describing non-C/T polymorphisms
DOI: 10.5061/dryad.0f839/2
title: meth_polys.CG.fst

description: VCF describing C/T polymorphisms followed by a G nucleotide
DOI: 10.5061/dryad.0f839/3
title: meth_polys.CHG.2.fst

description: VCF describing C/T polymorphisms followed by HG nucleotides
DOI: 10.5061/dryad.0f839/4
title: venn.0.1

description: Summaries of polymorphisms with minor allele frequency greater than 0.1 categorized by contig in which they are found, type of polymorphism, minor allele frequency, F_ST, arcsine transformed F_ST, and contig type. Type of polymorphism is SNP for non C/T polymorphisms, CGP for C/T polymorphisms followed by a G, or CHGP for C/T polymorphisms followed by HG. Contig type is 1) contig contains only polymorphisms of type SNP 2) only type CGP 3) only CHGP 4) both SNP and CGP together 5) both CGP and CHGP 6) both SNP and CHGP 7) all three types.
DOI: 10.5061/dryad.0f839/5
title: batch_1

description: VCF output from Stacks.
DOI: 10.5061/dryad.0f839/6
title: batch_1.catalog.tags

description: Catalog file from Stacks output
DOI: 10.5061/dryad.1j3s0/10
title: P2 interview

description: post IDE implementation patient interview no 2
DOI: 10.5061/dryad.1j3s0/11
title: P3 interview

description: post IDE implementation patient interview no 3
DOI: 10.5061/dryad.1j3s0/12
title: P4 interview

description: post IDE implementation patient interview no 4
DOI: 10.5061/dryad.1j3s0/13
title: P5 Interview

description: post IDE implementation patient interview no 5
DOI: 10.5061/dryad.1j3s0/14
title: P6 interview

description: post IDE implementation patient interview no 6
DOI: 10.5061/dryad.1j3s0/15
title: P7 interview

description: post IDE implementation patient interview no 7
DOI: 10.5061/dryad.1j3s0/7
title: sFG1.wps

description: pre IDE implementation staff focus group no1
DOI: 10.5061/dryad.1j3s0/8
title: sFG2.wps

description: pre IDE implementation staff  focus group 2
DOI: 10.5061/dryad.1j3s0/9
title: P1 interview

description: post IDE implementation patient interview no 1
DOI: 10.5061/dryad.22300/1
title: S1 - Strophid matrix with excluded taxa
DOI: 10.5061/dryad.22300/2
title: S2 - Strophid analysis with exc
DOI: 10.5061/dryad.22300/3
title: S3 - Strophid matrix
DOI: 10.5061/dryad.22300/4
title: S4 - Strophids matrix with traditional cardinal process characters
DOI: 10.5061/dryad.22300/5
title: S5 - Strophids matrix with microstructure characters
DOI: 10.5061/dryad.32ms0/1
title: Unsummarized soil 15N data

description: soil 15N data for individual samples. not summarized. includes excluded data for further reference.
DOI: 10.5061/dryad.32ms0/2
title: Data Sources

description: data sources for soil 15N data
DOI: 10.5061/dryad.32ms0/3
title: 15NDataSummarized

description: Mineral soil 15N data summarized to 0.1° latitude and longitude
DOI: 10.5061/dryad.38600/2
title: ContrastGain_VSbirds

description: The excel file contains contrast gain data that are reported in figures 3 and 4 in the main article. Data are tabulated for background (bg) and intra-plumage (intra) contrast during different viewing conditionas as shown in figure 2.
DOI: 10.5061/dryad.581f3/10
title: Sample database
DOI: 10.5061/dryad.581f3/4
title: Cytb Alignment
DOI: 10.5061/dryad.581f3/5
title: Gpd2 Alignment
DOI: 10.5061/dryad.581f3/6
title: Loci under balancing selection Structure File
DOI: 10.5061/dryad.581f3/7
title: Loci under divergent selection Structure File
DOI: 10.5061/dryad.581f3/8
title: Neutral loci Structure File
DOI: 10.5061/dryad.581f3/9
title: S7 Alignment
DOI: 10.5061/dryad.5q0m8/1
title: Scripts and manual for bioinformatic analyses
DOI: 10.5061/dryad.5q0m8/2
title: Chr 3L -&gt; Population - Is [Alignment Files]
DOI: 10.5061/dryad.5q0m8/3
title: Chr 3L -&gt; Population - Ys [Alignment Files]
DOI: 10.5061/dryad.5q0m8/4
title: Chr 3L -&gt; Population - Ii [Alignment Files]
DOI: 10.5061/dryad.5q0m8/5
title: Chr 3R -&gt; Population - Is [Alignment Files]
DOI: 10.5061/dryad.5q0m8/6
title: Chr 3R -&gt; Population - Ys [Alignment Files]
DOI: 10.5061/dryad.9t0r6/1
title: Root coordinates

description: Provides coordinates and species ids of roots sampled from soil blocks.  Variable descriptions are provided in the file.
DOI: 10.5061/dryad.j01j0/1
title: DQB alignment file NZSL

description: All NZSL individuals, MHC DQB loci/DNA sequences
DOI: 10.5061/dryad.j0kv0/4
title: P. falciparum and P. vivax matched incidence and prevalence database

description: Database of 1680 records and 61 fields. Incidence data obtained by active case detection are space-time matched to measures of prevalence. Data were curated from PubMed literature searches. Additional prevalence data were obtained from the Malaria Atlas Project (map.ox.ac.uk) database and modeled Plasmodium falciparum and Plasmodium vivax mapped endemicity surfaces. Age standardization was done using the ageStand package in the statistical software platform R.
DOI: 10.5061/dryad.j43p6/1
title: Mladkova2015_JAPPL_data

description: Data file contains 4 sheets with following information: (1) soil and plant biomass properties from field sampling of the long-term management experiments in 2011-2012, (2) soil properties from additional sampling in November 2012, (3-4) plant species composition of permanent plots monitored regularly since the start of the management experiments (2004-2009, 2013) at Brachypodium and Festuca sites, respectively. Plant species abbreviations consist of first three letters from the genus name and first three letters from the species name. List of abbreviations and respective scientific names can be found in Read Me file. Plant names follow nomenclature: Kubát, K., Hrouda, L., Chrtek, J., Kaplan, Z., Kirschner, J. & Štěpánek, J. (2002) Key to the Flora of the Czech Republic. Academia, Praha, Czech Republic.
DOI: 10.5061/dryad.k22kg/1
title: genotype reliability

description: Data obtained through genetic analysis softwares for assessing genotype reliability (reliotype input and output summary)
DOI: 10.5061/dryad.k22kg/2
title: genotype identification

description: Data obtained through genetic analysis software for genotype regrouping and identification (Gimlet input and output files)
DOI: 10.5061/dryad.k22kg/3
title: genotype consensus

description: Data obtained through genetic analysis software to identify consensus multilocus fecal genotype (Gimlet input and output files)
DOI: 10.5061/dryad.m4vh4/4
title: KNN genotype imputation

description: marker matrix for KNN imputation method
DOI: 10.5061/dryad.mn8cs/1
title: ATP_Exp_ JPEG_Sequence

description: Red, Green and Ratio Jpeg images forming primary dataset for ATP experiment described in paper.
DOI: 10.5061/dryad.mn8cs/2
title: JPEG Sequences for Scratch Wound experiment

description: Red, green and ratio immunofluorescence images captured during primary scratch wounding experiment described in paper.
DOI: 10.5061/dryad.p31j8/1
title: Python scripts used for the analysis

description: for details about the script see the attached readme
DOI: 10.5061/dryad.rm83s/1
title: Hybrid system increases efficiency of ballast water treatment

description: Environmental and biological initial and final values collected on the study "Hybrid system increases efficiency of ballast water treatment"
DOI: 10.5061/dryad.s2b5c/1
title: Volumes of brain regions- all subjects

description: Volumes of brain regions for all individual subjects, by species and caste.
DOI: 10.5061/dryad.0f839/7
title: batch_1.sumstats

description: Summary stats output from Stacks
DOI: 10.5061/dryad.1j3s0/16
title: P8 Interview

description: post IDE implementation patient interview no 8
DOI: 10.5061/dryad.1j3s0/17
title: P9 Interview

description: post IDE implementation patient interview no 9
DOI: 10.5061/dryad.1j3s0/18
title: P10 interview .wps

description: post IDE implementation patient interview no 10
DOI: 10.5061/dryad.1j3s0/19
title: P11 interview.wps

description: post IDE implementation patient interview no 11
DOI: 10.5061/dryad.1j3s0/20
title: S1 Interview.wps

description: post IDE implementation staff interview no 1
DOI: 10.5061/dryad.1j3s0/21
title: S2 interview .wps

description: post IDE implementation staff interview no 2
DOI: 10.5061/dryad.3216c/1
title: Microbial PFLA data

description: In early June 2011, 48 experimental plots (50 × 50 cm) were established in lawn (n = 24) and hummock microhabitats (n = 24) in a Sphagnum-dominated ombrotrophic peatland in the Store Mosse National Park, Sweden (57°17’54 N, 14°00’39 E). In both microhabitats, the vascular plant functional type (PFT) composition was manipulated by removing (clipping) ericoids (–Eric), graminoids (–Gram), or both. A set of control plots remained intact. One year later, peat samples (c. 20 g. f. wt) were collected from all plots (n =48) at the aerobic/anaerobic boundary (10 – 30 cm below the peat surface, microhabitat dependent). Microbial community composition was analysed on these samples using phospholipid fatty acid analysis.
DOI: 10.5061/dryad.35cs5/1
title: plos_medpred_dataset

description: Dataset used in the experiments described in the paper.
DOI: 10.5061/dryad.3p147/1
title: Priors_Posterior_and_Measurements

description: BSFG model input data and resulting posterior distributions. File names follow the convention established by the BSFG model (Runcie & Mukherjee, 2013). A file containing the 30 linear measurements collected in the skull of each strain specimen is also attached.
DOI: 10.5061/dryad.4dj10/1
title: Ficus petiolaris wasp count data

description: Includes counts of all female non-pollinating fig wasps from the syconia of the Sonoran Desert rock fig, Ficus petiolaris. The data file includes the site, tree and syconia (`Fruit') labels from each syconia sampled (rows); the data also includes columns indicating tree lat-lon coordinates, pollinating foundresses arriving to the syconia (corpses remain within syconia), fruit volume, counts of all wasp species, and the number of neighbours a tree has within a 1 km radius. The pollinator (`Poll') is an unnamed (as of 2015) species of Pegoscapus. Wasps `LO1', `SO1', and `SO2' are all unnamed species of the genus Idarnes, and wasps `Het1' and `Het2' are both unnamed species of the genus Heterandrium. The wasps `Physo' and `Aepoc' are wasps of unnamed species of the genera Physothorax and Aepocerus, respectively; `NA' denotes missing values.
DOI: 10.5061/dryad.4dj10/2
title: Ficus petiolaris wasp wing loadings

description: This file includes measurements to estimate wing loading for 83 wasps (rows) of the species of interest in Duthie et al. (2015): LO1 (unnamed Idarnes), SO1 (unnamed Idarnes), SO2 (unnamed Idarnes), Het1 (unnamed Heterandrium), and Het2 (unnamed Heterandrium). Each row is a single wasp, and columns show the site, tree, and fruit from which the wasp was sampled. Lengths and widths of wasp heads, thoraxes, and abdomens are included as measured at their widest points (e.g., for the wasp abdomen, the whole length of the segment is reported, along with an estimate of its width at the widest point). Wing areas were calculated using wing images and ImageJ software.
DOI: 10.5061/dryad.4dj10/3
title: Ficus petiolaris wasp egg loads

description: File includes estimates of wasp egg loads from 54 wasps (rows) of the following species:  LO1 (unnamed Idarnes), SO1 (unnamed Idarnes), SO2 (unnamed Idarnes), Het1 (unnamed Heterandrium), and Het2 (unnamed Heterandrium). Both mature and immature egg counts were estimated, and columns include the site, tree, and fruit from which the wasp was sampled.
DOI: 10.5061/dryad.4dj10/4
title: R code for Ficus petiolaris wasp data analysis

description: The subsequent code replicates the analyses used in Duthie et al. (2015) American Naturalist. All data were collected in 2010 in the field from populations of Sonoran Desert rock fig (Ficus petiolaris) trees. For this analysis, three files are needed: `wasp_data.csv', `wing_loadings.csv', and `egg_loads.csv'.
DOI: 10.5061/dryad.5q0m8/10
title: Fst calculations

description: FST calculations for all comparisons per SNP and in 200kb windows sliding every 20kb, using VCFTOOLS
DOI: 10.5061/dryad.5q0m8/7
title: Chr 3R -&gt; Population - Ii [Alignment Files]
DOI: 10.5061/dryad.5q0m8/8
title: Imputed and combined variant call files

description: VCF files for 3 populations after data imputation