cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7358834.v1
title: Pathways from DMRs #1

description: pathways affected by dmrs
DOI: 10.6084/m9.figshare.7358786
title: Transplantation of neural stem cells induced by all-transretinoic acid combined with nerve growth factor for repairing spinal cord injury in rats

description: The effects of neural stem cell (NSC) transplantation on repair in spinal cord injury are not ideal. All-trans-retinoic acid (ATRA) can promote nerve regeneration and repair, and has been observed to act as a mediator of inflammation-induced sensitization. Its potential therapeutic use in spinal cord injury is therefore of great interest, but its effects on neuroinflammation need to be identified. Previous studies have confirmed that the differentiation ratio of neurons from NSCs <i>in vitro</i> increases with ATRA intervention. Nerve growth factor (NGF) is one of the most important nerve growth regulators in the nervous system, and is characterized by its dual biological functions of facilitating neuron nutrition and protruding growth. It has important clinical significance for the development, differentiation, growth, and expression of functional properties of neurons, as well as the regeneration and repair of injured nerves. In this study, we<b> </b>observed the effects of transplanting NSCs induced by ATRA combined with NGF on the neurological functional recovery of injured spinal cords in Sprague Dawley (SD) rats. The rats were transplanted with or without NSCs combined with or without NGF at 7 days after induction of SCI, and functional recovery was evaluated following the operation. Results showed that the transplantation of NSCs induced by ATRA promoted the functional recovery of spinal cord injury, and when combined with NGF, a significant effect was observed. This study provides a basis for the development of potential therapies combining ATRA and NGF to promote the proliferation and survival of neurons in the CNS environment.
DOI: 10.7284/109139
title: TSG (Thermosalinograph) data collected during research cruise PE12-33 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358765
title: DMRs for each sample

description: dmrs for each sample
DOI: 10.7284/120568
title: Fluorometer data collected during research cruise PE13-01 using a Turner 10-AU instrument system onboard the platform RV Pelican
DOI: 10.6084/m9.figshare.7358753
title: Pathways from DEGS #8

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358762
title: Pathways from DEGS #9

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358729
title: Pathways from DEGS #7

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358753.v1
title: Pathways from DEGS #8

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358762.v1
title: Pathways from DEGS #9

description: pathways affected by degs
DOI: 10.7284/106417
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-01 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358729.v1
title: Pathways from DEGS #7

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358717
title: Pathways from DEGS #6

description: pathways affected by degs
DOI: 10.7284/116151
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-01 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358714
title: Pathways from DEGS #5

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358714.v1
title: Pathways from DEGS #5

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358717.v1
title: Pathways from DEGS #6

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358708
title: Figure 2 + Additional file 6: Figure S4

description: Raw data used for creating Figure 2 and Additional file 6: Figure S4 of the paper "A Label-free Multicolor Optical Surface Tomography (ALMOST) imaging method for nontransparent 3D samples". Files are combined in compressed 7-Zip archive(s).
DOI: 10.6084/m9.figshare.7358699
title: Pathways from DEGS #4

description: affected pathways by degs
DOI: 10.7284/106418
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-02 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358693
title: mapping of RRM families to other websites ECOD and PFAM

description: mapping of RRM families to other websites ECOD and PFAM
DOI: 10.6084/m9.figshare.7358693.v1
title: mapping of RRM families to other websites ECOD and PFAM

description: mapping of RRM families to other websites ECOD and PFAM
DOI: 10.6084/m9.figshare.7358699.v1
title: Pathways from DEGS #4

description: affected pathways by degs
DOI: 10.6084/m9.figshare.7358675
title: Pathways from DEGS #3

description: pathways affected by degs
DOI: 10.7284/116152
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-02 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358675.v1
title: Pathways from DEGS #3

description: pathways affected by degs
DOI: 10.6084/m9.figshare.7358669
title: Pathways from DEGS #2

description: personalized affected pathways found by degs
DOI: 10.6084/m9.figshare.7358648
title: Supplementary Material for: Confined Thalamic Deep Brain Stimulation in Refractory Essential Tremor

description: <b><i>Background:</i></b> Thalamic ventral intermediate nucleus (VIM) deep brain stimulation (DBS) is an effective therapy for medication-refractory essential tremor (ET). However, 13–40% of patients with an initially robust tremor efficacy lose this benefit over time despite reprogramming attempts.<i></i> At our institution, a cohort of ET patients with VIM DBS underwent implantation of a second anterior (ventralis oralis anterior; VOA) DBS lead to permit “confined stimulation.” We sought to assess whether confined stimulation conferred additional tremor capture compared to VIM or VOA stimulation alone. <b><i>Methods:</i></b> Seven patients participated in a protocol-based programming session during which a video-recorded Fahn-Tolosa-Marin Part A (FTM-A) tremor rating scale was used in the following 4 DBS states: off stimulation, VIM stimulation alone, VOA stimulation alone, and dual lead (confined) stimulation. <b><i>Results:</i></b> The average (SD) baseline FTM-A off score was 17.6 (4.0). VIM stimulation alone lowered the average FTM-A total score to 6.9 (4.0). Confined stimulation further attenuated the tremor, reducing the total score to 5.7 (2.8). <b><i>Conclusions:</i></b> Confined thalamic DBS can provide additional symptomatic benefits in patients with unsatisfactory tremor control from VIM or VOA stimulation alone.
DOI: 10.6084/m9.figshare.7358669.v1
title: Pathways from DEGS #2

description: personalized affected pathways found by degs
DOI: 10.7284/106829
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise PE13-03 using a RDI OS-75 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358648.v1
title: Supplementary Material for: Confined Thalamic Deep Brain Stimulation in Refractory Essential Tremor

description: <b><i>Background:</i></b> Thalamic ventral intermediate nucleus (VIM) deep brain stimulation (DBS) is an effective therapy for medication-refractory essential tremor (ET). However, 13–40% of patients with an initially robust tremor efficacy lose this benefit over time despite reprogramming attempts.<i></i> At our institution, a cohort of ET patients with VIM DBS underwent implantation of a second anterior (ventralis oralis anterior; VOA) DBS lead to permit “confined stimulation.” We sought to assess whether confined stimulation conferred additional tremor capture compared to VIM or VOA stimulation alone. <b><i>Methods:</i></b> Seven patients participated in a protocol-based programming session during which a video-recorded Fahn-Tolosa-Marin Part A (FTM-A) tremor rating scale was used in the following 4 DBS states: off stimulation, VIM stimulation alone, VOA stimulation alone, and dual lead (confined) stimulation. <b><i>Results:</i></b> The average (SD) baseline FTM-A off score was 17.6 (4.0). VIM stimulation alone lowered the average FTM-A total score to 6.9 (4.0). Confined stimulation further attenuated the tremor, reducing the total score to 5.7 (2.8). <b><i>Conclusions:</i></b> Confined thalamic DBS can provide additional symptomatic benefits in patients with unsatisfactory tremor control from VIM or VOA stimulation alone.
DOI: 10.7284/120570
title: Fluorometer data collected during research cruise PE13-03 using a Turner 10-AU instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358621
title: experimental data.xlsx

description: The effects of neural stem cell (NSC) transplantation on repair in spinal cord injury are not ideal. All-trans-retinoic acid (ATRA) can promote nerve regeneration and repair, and has been observed to act as a mediator of inflammation-induced sensitization. Its potential therapeutic use in spinal cord injury is therefore of great interest, but its effects on neuroinflammation need to be identified. Previous studies have confirmed that the differentiation ratio of neurons from NSCs <i>in vitro</i> increases with ATRA intervention. Nerve growth factor (NGF) is one of the most important nerve growth regulators in the nervous system, and is characterized by its dual biological functions of facilitating neuron nutrition and protruding growth. It has important clinical significance for the development, differentiation, growth, and expression of functional properties of neurons, as well as the regeneration and repair of injured nerves. In this study, we<b> </b>observed the effects of transplanting NSCs induced by ATRA combined with NGF on the neurological functional recovery of injured spinal cords in Sprague Dawley (SD) rats. The rats were transplanted with or without NSCs combined with or without NGF at 7 days after induction of SCI, and functional recovery was evaluated following the operation. Results showed that the transplantation of NSCs induced by ATRA promoted the functional recovery of spinal cord injury, and when combined with NGF, a significant effect was observed. This study provides a basis for the development of potential therapies combining ATRA and NGF to promote the proliferation and survival of neurons in the CNS environment.
DOI: 10.6084/m9.figshare.7358621.v1
title: experimental data.xlsx

description: The effects of neural stem cell (NSC) transplantation on repair in spinal cord injury are not ideal. All-trans-retinoic acid (ATRA) can promote nerve regeneration and repair, and has been observed to act as a mediator of inflammation-induced sensitization. Its potential therapeutic use in spinal cord injury is therefore of great interest, but its effects on neuroinflammation need to be identified. Previous studies have confirmed that the differentiation ratio of neurons from NSCs <i>in vitro</i> increases with ATRA intervention. Nerve growth factor (NGF) is one of the most important nerve growth regulators in the nervous system, and is characterized by its dual biological functions of facilitating neuron nutrition and protruding growth. It has important clinical significance for the development, differentiation, growth, and expression of functional properties of neurons, as well as the regeneration and repair of injured nerves. In this study, we<b> </b>observed the effects of transplanting NSCs induced by ATRA combined with NGF on the neurological functional recovery of injured spinal cords in Sprague Dawley (SD) rats. The rats were transplanted with or without NSCs combined with or without NGF at 7 days after induction of SCI, and functional recovery was evaluated following the operation. Results showed that the transplantation of NSCs induced by ATRA promoted the functional recovery of spinal cord injury, and when combined with NGF, a significant effect was observed. This study provides a basis for the development of potential therapies combining ATRA and NGF to promote the proliferation and survival of neurons in the CNS environment.
DOI: 10.7284/106419
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-03 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358585
title: Raw data co-op.xlsx from Correction to ‘Lönnstedt OM, Ferrari MCO, Chivers DP. 2014 Lionfish predators use flared fin displays to initiate cooperative hunting’

description: Correction to 2018;Lönnstedt OM, Ferrari MCO, Chivers DP. 2014 Lionfish predators use flared fin displays to initiate cooperative hunting;"
DOI: 10.6084/m9.figshare.7358585.v1
title: Raw data co-op.xlsx from Correction to ‘Lönnstedt OM, Ferrari MCO, Chivers DP. 2014 Lionfish predators use flared fin displays to initiate cooperative hunting’

description: Correction to 2018;Lönnstedt OM, Ferrari MCO, Chivers DP. 2014 Lionfish predators use flared fin displays to initiate cooperative hunting;"
DOI: 10.7284/116155
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-03 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/124681
title: Gyrocompass data collected during research cruise PE13-03 using a Sperry NAVIGAT X MK 1 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116552
title: Meteorological Station data collected during research cruise PE13-03 using a CWS Magellan instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/116154
title: Transmissometer data collected during research cruise PE13-03 using a WET Labs C-Star instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358564
title: Summary of regression procedures from Identifying the ingredients of hydrous arc magmas: insights from Mt Lamington, Papua New Guinea

description: Summary of trace element and major element regression procedures
DOI: 10.6084/m9.figshare.7358564.v1
title: Summary of regression procedures from Identifying the ingredients of hydrous arc magmas: insights from Mt Lamington, Papua New Guinea

description: Summary of trace element and major element regression procedures
DOI: 10.7284/106830
title: TSG (Thermosalinograph) data collected during research cruise PE13-03 using a Sea-Bird SBE-21 instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358552
title: Pathways from DEGS #1

description: pathways affected by degs #1
DOI: 10.7284/120571
title: Fluorometer data collected during research cruise PE13-04 using a Turner 10-AU instrument system onboard the platform RV Pelican
DOI: 10.6084/m9.figshare.7358552.v1
title: Pathways from DEGS #1

description: pathways affected by degs #1
DOI: 10.7284/106420
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-04 using a Northstar 941X instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358534
title: Table of analyses from Mafic glass compositions: a record of magma storage conditions, mixing and ascent

description: Contains all previously unpublished analyses used in Figure 9
DOI: 10.6084/m9.figshare.7358534.v1
title: Table of analyses from Mafic glass compositions: a record of magma storage conditions, mixing and ascent

description: Contains all previously unpublished analyses used in Figure 9
DOI: 10.7284/116158
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-04 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.17028/rd.lboro.7358504
title: Supplementary Information files for "Transforming presumptive forensic testing: In-situ identification and age estimation of human bodily fluids"

description: These are the SI files for the article "Transforming presumptive forensic testing: In-situ identification and age estimation of human bodily fluids".<br>Abstract:The ability to achieve rapid, in situ identification and age estimation of human bodily fluids can provide valuable information during the investigation of a crime. A novel direct analysis method now permits the rapid in situ identification and age estimation of human bodily fluids for forensic analysis at crime scenes. A thermal desorption surface sampling probe was developed and coupled with a compact mass spectrometer for the direct analysis of volatile organic compound (VOC) profiles of human bodily fluids within two months and in different environmental conditions, without the need for prior sample preparation. The method is not only capable of identifying bodily fluids and discriminating against common interferent species, but also differentiating between bodily fluid stains of different ages over a time period of two months. This demonstrates the potential for rapid in situ identification and age estimation of bodily fluids without the need for contaminative presumptive tests or time-consuming sample preparation.<br>
DOI: 10.7284/120572
title: Fluorometer data collected during research cruise PE13-05 using a Turner 10-AU instrument system onboard the platform RV Pelican
DOI: 10.17028/rd.lboro.7358504.v1
title: Supplementary Information files for "Transforming presumptive forensic testing: In-situ identification and age estimation of human bodily fluids"

description: These are the SI files for the article "Transforming presumptive forensic testing: In-situ identification and age estimation of human bodily fluids".<br>Abstract:The ability to achieve rapid, in situ identification and age estimation of human bodily fluids can provide valuable information during the investigation of a crime. A novel direct analysis method now permits the rapid in situ identification and age estimation of human bodily fluids for forensic analysis at crime scenes. A thermal desorption surface sampling probe was developed and coupled with a compact mass spectrometer for the direct analysis of volatile organic compound (VOC) profiles of human bodily fluids within two months and in different environmental conditions, without the need for prior sample preparation. The method is not only capable of identifying bodily fluids and discriminating against common interferent species, but also differentiating between bodily fluid stains of different ages over a time period of two months. This demonstrates the potential for rapid in situ identification and age estimation of bodily fluids without the need for contaminative presumptive tests or time-consuming sample preparation.<br>
DOI: 10.6084/m9.figshare.7358483
title: Cohort-Wide Affected Pathways

description: Affected pathways from separetly analysed datasets
DOI: 10.7284/112425
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-05 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7358483.v1
title: Cohort-Wide Affected Pathways

description: Affected pathways from separetly analysed datasets
DOI: 10.17028/rd.lboro.7358477
title: Supplementary Information files for "Thermoplasmonic Response of Semiconductor Nanoparticles: A Comparison with Metals"

description: These are the SI files for the article "Thermoplasmonic Response of Semiconductor Nanoparticles: A Comparison with Metals" which is available at https://doi.org/10.1002/adts.201800100
DOI: 10.6084/m9.figshare.7358480
title: Additional data for Kuderna, Lizano, et al. (2018)

description: Whole genome assembly of NA24385; Repeatmasker annotations for GRCh38 chrY & HG02982 chrY;Methylation calls from Nanopore & Illumina WGBS
DOI: 10.7284/120573
title: Fluorometer data collected during research cruise PE13-06 using a Turner 10-AU instrument system onboard the platform RV Pelican
DOI: 10.17028/rd.lboro.7358477.v1
title: Supplementary Information files for "Thermoplasmonic Response of Semiconductor Nanoparticles: A Comparison with Metals"

description: These are the SI files for the article "Thermoplasmonic Response of Semiconductor Nanoparticles: A Comparison with Metals" which is available at https://doi.org/10.1002/adts.201800100
DOI: 10.6084/m9.figshare.7358480.v1
title: Additional data for Kuderna, Lizano, et al. (2018)

description: Whole genome assembly of NA24385; Repeatmasker annotations for GRCh38 chrY & HG02982 chrY;Methylation calls from Nanopore & Illumina WGBS
DOI: 10.6084/m9.figshare.7358468
title: Undergraduate neurosurgical conferences – what role do they play?

description: <b>Introduction</b>: Undergraduate student conferences provide networking opportunities for students interested in exploring a speciality. The ability to meet with like-minded students, engage with senior clinicians and experience the practical side of a speciality are valuable in shaping the career trajectory of undergraduates. We report our experience of developing a national undergraduate neurosurgery conference – a combined project between the medical students of King’s College London School of Medicine and the neurosurgery department at King’s College Hospital NHS Foundation Trust. <b>Design:</b> Evaluation of conference design and student feedback. <b>Methods:</b> The conference was organised by medical students with support from a neurosurgical unit. Senior clinicians and trainees helped design practical workshops and a focused programme. Questionnaires were distributed before and after the conference to assess the quality of content and impact of the conference on students. <b>Results:</b> Prior to the conference, 80.7% of respondents stated they were interested in a career in neurosurgery. After the conference the figure rose to 88.9%. The percentage of students who felt they understood what a career in neurosurgery involves increased from 38.6% to 92.1% of respondents. 39.0% of participants had no neurosurgery exposure prior to the conference. 91.9% of participants agreed or strongly agreed they would be more confident engaging with a neurosurgical department following the conference. All participants agreed (29.0%) or strongly agreed (71.0%) that they would recommend this conference to a colleague. <b>Conclusions:</b> Student conferences are a valuable method of increasing exposure to a career in neurosurgery. They serve a great purpose in demystifying the specialty and guiding those with an interest through the steps required to enter and progress.
DOI: 10.7284/112430
title: GNSS (Global Navigation Satellite System) data collected during research cruise PE13-06 using a Trimble 4000DL instrument system onboard the platform RV Pelican

description: Original (unprocessed) data collected during a Field_expedition