cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3607397_d11.v1
title: Additional file 7: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S6. Counts after processing the raw read files with Additional file 17: Supplementary file 4 for TRAIL1. (XLSX 444 kb)
DOI: 10.6084/m9.figshare.c.3607397_d12.v1
title: Additional file 4: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S3. File formats, as output of CLD. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.c.3607397_d13.v1
title: Additional file 15: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Supplementary file 2. TRAIL targeting high complexity oligo library. (FASTA 1564 kb)
DOI: 10.6084/m9.figshare.c.3607466_d1.v1
title: Additional file 3: of Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

description: List of breed-specific variants. This table contains these variants that were present in a single breed at pAAF ≥ 0.1 or present in all breeds at pAAF ≥ 0.5 but absent in one single population. (XLSX 154 kb)
DOI: 10.6084/m9.figshare.c.3607397_d14.v1
title: Additional file 9: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S8. Re-annonation of the sgRNA library targeting the TRAIL pathway. (XLSX 1883 kb)
DOI: 10.6084/m9.figshare.c.3607397_d15.v1
title: Additional file 1: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S1. Detailed list and description of available parameters used in CLD. (XLSX 13 kb)
DOI: 10.5281/zenodo.14082605
title: Polytype switching by super lubricant van der Waals cavity arrays
DOI: 10.6084/m9.figshare.c.3607397_d16.v1
title: Additional file 2: of CRISPR library designer (CLD): software for multispecies design of single guide RNA libraries

description: Table S2. ENSEMBL ID to gene symbol mapping. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3607433_d18.v1
title: Additional file 15: Table S7. of Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice

description: Numeric LD Decay. (XLSX 14Â kb)
DOI: 10.6084/m9.figshare.c.3607517_d1.v1
title: Additional file 1: Figure S1. of DEF6 expression in ovarian carcinoma correlates with poor patient survival

description: Kaplan-Meier curves for overall survival in four histological subtypes of ovarian carcinoma patients according to DEF6, p16 and p53 expressions. A, Patients with high DEF6 expression (scores 2 and 3; n = 60) versus low DEF6 expression (scores 0 and 1; n = 15) in high-grade serous carcinoma. (H: high DEF6 expression; L: low DEF6 expression). B, Patients with high p16 expression (scores 2 and 3; n = 56) versus low p16 expression (scores 0 and 1; n = 18) in high-grade serous carcinoma. (H: high p16 expression; L: low p16 expression). C, Patients with aberrant p53 expression (scores 0 and 3; n = 62) versus insignificant p53 expression (scores 1 and 2; n = 12) in high-grade serous carcinoma. D, Patients with high DEF6 expression (scores 2 and 3; n = 20) versus low DEF6 expression (scores 0 and 1; n = 16) in mucinous carcinoma. (H: high DEF6 expression; L: low DEF6 expression). E, Patients with high p16 expression (scores 2 and 3; n = 32) versus low p16 expression (scores 0 and 1; n = 3) in mucinous carcinoma. (H: high p16 expression; L: low p16 expression). F, Patients with aberrant p53 expression (scores 0 and 3; n = 17) versus insignificant p53 expression (scores 1 and 2; n = 19) in mucinous carcinoma. G, Patients with high DEF6 expression (scores 2 and 3; n = 6) versus low DEF6 expression (scores 0 and 1; n = 22) in endometrioid carcinoma. (H: high DEF6 expression; L: low DEF6 expression). H, Patients with high p16 expression (scores 2 and 3; n = 17) versus low p16 expression (scores 0 and 1; n = 11) in endometrioid carcinoma. (H: high p16 expression; L: low p16 expression). I, Patients with aberrant p53 expression (scores 0 and 3; n = 9) versus insignificant p53 expression (scores 1 and 2; n = 19) in endometrioid carcinoma. J, Patients with high p16 expression (scores 2 and 3; n = 30) versus low p16 expression (scores 0 and 1; n = 11) in clear cell carcinoma. (H: high p16 expression; L: low p16 expression). K, Patients with aberrant p53 expression (scores 0 and 3; n = 10) versus insignificant p53 expression (scores 1 and 2; n = 31) in clear cell carcinoma. (ZIP 195 kb)
DOI: 10.6084/m9.figshare.c.3607535_d1.v1
title: Additional file 3: of A method for identification of highly conserved elements and evolutionary analysis of superphylum Alveolata

description: Presents summary data on the clusters. The Resume sheet provides some information on the algorithm results with different parameters. The variant with the threshold length 65Â bp, which is discussed in the main paper, is highlighted in pink. In lines 15â  42, the number of m-dense clusters and their vertices are shown for m values from 30 to 3. For example (line 15): 14 clusters were found containing words from all 30 genomes; these clusters comprise a total of 3736 vertices, i.e. 9 words per genome on average. Another example (line 35): 84 clusters were found containing words from 10 genomes; 1.2 words per genome on average. On the Clusters sheet, each line starting from the sixth one corresponds to a cluster. Column A contains the cluster number highlighted in the case of untranslated or unknown UCE (similar to Additional file 2). The HCE type is shown in column B as follows: if any of cluster words was found in Rfam, the cluster corresponds to a known RNA such as tRNA, snRNA, etc.; the column contains this RNA label; if any of cluster words overlaps with a CDS, it corresponds to a protein (exon) and is labeled as a protein; if any of cluster words overlaps with a gene, it corresponds to an intron or other untranslated region and is labeled as an intron; otherwise the cluster describes an unknown HCE (no label in column B). Column C shows the total number of words in the cluster; column D, the total number of species containing these words; and columns Eâ  AH, the number of words from each species. (XLSX 1109 kb)
DOI: 10.57955/8ba58b19-4d2e-45bd-b6a3-4057877c114c
title: Coming of age during war: minor fighters in post-war Bosnia-Herzegovina
DOI: 10.6084/m9.figshare.c.3607538_d1.v1
title: Additional file 9: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: KEGG pathway enrichment analysis results of ceRNAs. (XLS 27Â kb)
DOI: 10.6084/m9.figshare.c.3607541_d1.v1
title: Additional file 3: Table S1. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing highly significant SNPs (genome-wise FDR ≤ 5 %, FDR ≤ 1% and genome-wise Bonferroni ≤ 5 %) resulting from GWAS using single SNP regression mixed linear model for milk production (MILK), fat production (FAT), fat deviation (FATD), protein production (PROT) and protein deviation (PROTD). (XLS 518 kb)
DOI: 10.6084/m9.figshare.c.3607538_d2.v1
title: Additional file 2: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Differentially expressed mRNAs. (XLS 1631Â kb)
DOI: 10.5523/bris.rajs1bybhrah2nf5py0llsm12
title: Datasets Transport Measurements for Publication "Diffusion-driven Transient Hydrogenation in Metal Superhydrides at Extreme Conditions"

description: Raw data for the publication "Diffusion-driven Transient Hydrogenation in Metal Superhydrides at Extreme
Conditions"
DOI: 10.6084/m9.figshare.c.3607541_d7.v1
title: Additional file 9: Table S4. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing previously identified production or fertility trait QTL that overlap with the SNPs identified in this study for calving to first service interval (CTFS). (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3607538_d9.v1
title: Additional file 4: of A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines

description: Differentially expressed novel lncRNAs. (XLS 1429Â kb)
DOI: 10.6084/m9.figshare.c.3607541_d9.v1
title: Additional file 5: Table S5. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing gene ontology biological process terms enriched among GWAS results for production traits; milk production (MILK), fat production (FAT), fat deviation (FATD), protein production (PROT) and protein deviation (PROTD). (XLS 803 kb)
DOI: 10.6084/m9.figshare.c.3607553_d5.v1
title: Additional file 4: of Impact of microRNA-130a on the neutrophil proteome

description: Complete sets of quantified proteins and related parameters in the 32Dcl3 miR-130a clone and the Kasumi-1 cells. (XLSX 1936 kb)
DOI: 10.6084/m9.figshare.c.3607574_d1.v1
title: Additional file 3: of The global intellectual property ecosystem for insulin and its public health implications: an observational study

description: Complete dataset of issued patents and patent applications. This file has two tabs: “Post-1995” contains results of all patent searches in which the initial patent application has a priority date after 31 December 1994. “Family size comparison” analyses the number of different patent “threads” for the data in the prior tab. Patent ‘threads” are described in the text. (XLSX 876 KB)
DOI: 10.6084/m9.figshare.c.3607541_d10.v1
title: Additional file 10: Table S6. of Genome-wide association for milk production and female fertility traits in Canadian dairy Holstein cattle

description: Excel file describing gene ontology biological process terms enriched among GWAS results for fertility traits; calving to first service interval (CTFS) and days open (DO). (XLS 339 kb)
DOI: 10.6084/m9.figshare.c.3607598_d1.v1
title: Additional file 2: Table S2. of Estimation of loss of genetic diversity in modern Japanese cultivars by comparison of diverse genetic resources in Asian pear (Pyrus spp.)

description: Description of the 19 simple sequence repeat (SSR) markers used in this study. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3607583_d2.v1
title: Additional file 1: Table S1. of Patterns of rapid diversification in heteroploid Knautia sect. Trichera (Caprifoliaceae, Dipsacoideae), one of the most intricate taxa of the European flora

description: Voucher information and GenBank accession numbers. More information can be retrieved from http://www.uibk.ac.at/botany/balkbiodiv/?BALKBIODIV under “Sampling sites” (XLS 166 kb)
DOI: 10.6084/m9.figshare.c.3607574_d4.v1
title: Additional file 4: of The global intellectual property ecosystem for insulin and its public health implications: an observational study

description: Spearman’s Rho coefficient. This file shows the data used to calculate the non-parametric Spearman’s rank correlation between the number of patent ‘threads” and the a) average number of persons with diabetes x 100 (2007–2010); b) the average GNI/capital (1995–2015). (XLSX 18.6 KB)
DOI: 10.6084/m9.figshare.c.3607616_d2.v1
title: Additional file 2: of Changes in global gene expression of Vibrio parahaemolyticus induced by cold- and heat-stress

description: Differentially expressed genes with log 2 fold change &gt;1.5 and adjusted p -value &lt;0.05 in each condition. Additional file includes the homolog and antagonistic reacting genes. (XLSX 192Â kb)
DOI: 10.6084/m9.figshare.c.3607637_d1.v1
title: Additional file 2: of Etoposide damages female germ cells in the developing ovary

description: Full data set for Figures 2-7. (XLSX 35 kb)
DOI: 10.6084/m9.figshare.c.3607643_d1.v1
title: Additional file 3: Table S2. of Functional outcome measures in a surgical model of hip osteoarthritis in dogs

description: Complete dataset of Spearman rank order correlations performed for all outcome measures. Correlations highlighted in red are significant at p&lt;0.05.(XLSX 133 kb)
DOI: 10.15468/dl.pkv2yk
title: Occurrence Download

description: A dataset containing 484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lepisiota frauenfeldi (Mayr, 1855)"
 ]
}

 The dataset includes 484 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037537-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607715_d3.v1
title: MOESM1 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

description: Additional file 1: Tables S1 and S2. S1: Process parameters of the analyzed BGPs. Different substrate types marked by the different colors (green: agricultural substrates, orange: industrial waste, purple: slaughter house waste, blue: sewage sludge, red: municipal waste, grey: mixed/unknown substrates. The column labeled with â  Name*â   corresponds to the BGP names in De Vrieze et al. [1]. S2: Correlations between process parameters visualized as generalized plot matrix [63].
DOI: 10.6084/m9.figshare.c.3607724_d1.v1
title: Additional file 1: of miRNA profiling, detection of BRAF V600E mutation and RET-PTC1 translocation in patients from Novosibirsk oblast (Russia) with different types of thyroid tumors

description: Sequences of oligonucleotides used in the study. R6G – Rhodamine 6G (Rhodamine 590), BHQ1 – Black Hole Quencher-1, LNA – Locked Nucleic Acid. (XLS 39 kb)
DOI: 10.6084/m9.figshare.c.3607721_d3.v1
title: Additional file 3: Table S2. of Six1 homeoprotein drives myofiber type IIA specialization in soleus muscle

description: Affymetrix microarray analysis in SOL of cSix1 mice. (XLS 7368 kb)
DOI: 10.6084/m9.figshare.c.3607724_d2.v1
title: Additional file 2: of miRNA profiling, detection of BRAF V600E mutation and RET-PTC1 translocation in patients from Novosibirsk oblast (Russia) with different types of thyroid tumors

description: Patients Characteristics. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3607715_d12.v1
title: MOESM23 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

description: Additional file 23. Calculations sheet for richness and evenness.
DOI: 10.6084/m9.figshare.c.3607766_d2.v1
title: Additional file 2: of Implementation of Child Death Review in the Netherlands: results of a pilot study

description: Form C - Analysis Proforma. (ODT 32 kb)
DOI: 10.23668/psycharchives.3104
title: Dataset for "Internal consistency and test-retest reliability of an affective task-switching paradigm"

description: Single Trial data for an Test-Retest study (test / retest) with an affective task-switching paradigm (N=47)
description: DATASET for: "Internal consistency and test-retest reliability of an affective task-switching paradigm", Preprint is available at https://psyarxiv.com/k4yn3
DOI: 10.6084/m9.figshare.c.3607715_d13.v1
title: MOESM18 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

description: Additional file 18: Table S1. Potential markers of process conditions identified by decision tree learning. The classification errors as well as the correlations to process parameters are shown (cut-off 5Â %, Spearmanâ  s rank, p value 0.01).
DOI: 10.6084/m9.figshare.c.3607715_d14.v1
title: MOESM6 of Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type

description: Additional file 6: Tables S1, S2 and S3. S1: List of all identified metaproteins. S2: List of all identified taxonomic orders. S3: List of all identified biological processes.
DOI: 10.6084/m9.figshare.c.3607829_d3.v1
title: Additional file 2 of Principal components analysis - K-means transposon element based foxtail millet core collection selection method

description: ∙ alleleFrecNRet.m ∙ CCvalidation.m ∙ corrI.m ∙ ChooseInitialCenters.m ∙ dcKMeansB.m ∙ DirectkMeans.m ∙ eigdec.m ∙ FFTCompare.m ∙ FFTForSignals.m ∙ findCCinFC.m ∙ randCC.m ∙ pca2.m ∙ README.m ∙ triu.m (RAR 12.4 kb)
DOI: 10.6084/m9.figshare.c.3607883_d1.v1
title: Additional file 2: of Ex-vivo and live animal models are equally effective training for the management of a penetrating cardiac injury

description: Raw Data Ex vivo training subjective for submission. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3607898_d1.v1
title: Additional file 1: of Spontaneous mutations in the flhD operon generate motility heterogeneity in Escherichia coli biofilm

description: Complete data set for individual isolates. (XLS 41 kb)
DOI: 10.6084/m9.figshare.c.3607883_d2.v1
title: Additional file 1: of Ex-vivo and live animal models are equally effective training for the management of a penetrating cardiac injury

description: Raw Data Ex vivo training objective for submission. (XLSX 31 kb)
DOI: 10.6084/m9.figshare.c.3607904_d2.v1
title: Additional file 2: of Whole genome sequencing and comparative genomics of closely related Fusarium Head Blight fungi: Fusarium graminearum, F. meridionale and F. asiaticum

description: Summary tables for gene conservation, variation, annotation, and functional enrichment analyses. Description: Table S1. the accessory genome is a subset of the pan genome. Table S2. components of the accessory genome that are species and isolate specific. Table S3. functional categories of F. graminearum species-specific accessory genes. Table S4. genes from the pan genome not from PH-1 were annotated by Blast-2-Go to be involved in a wide array of processes. Table S5. common genes with &gt;20% sequence variation. Table S6. common genes that are variable are mostly of unknown function. Table S7. parameter values and log likelihood scores of codon substitution models. (XLSX 2162Â kb)
DOI: 10.6084/m9.figshare.c.3607907_d2.v1
title: Additional file 4: of Whole-transcriptome analyses of the Sapsaree, a Korean natural monument, before and after exercise-induced stress

description: Gene expression value of the 525 DEGs. (XLSX 163Â kb)
DOI: 10.17035/cardiff.28001282
title: Ag-Cu catalysts for CO2 reduction

description: The dataset contains the absolute energy values derived from quantum mechanical atomistic simulations supporting the results in the paper "Cu-Ag Gas Diffusion Electrodes for Electrochemical CO<sub>2</sub> Reduction to Multi-carbon Products". It includes detailed information on energy values calculated for the systems of interest. This data is a foundation for analysing the structural changes and processes occurring and observed in the Cu-Ag gas diffusion electrodes during the experiments. It provides valuable insights into their performance decay during electrochemical CO2 reduction.
DOI: 10.6084/m9.figshare.c.3607952_d2.v1
title: Additional file 2: Table S1. of Patterns of ribosomal protein expression specify normal and malignant human cells

description: Tissue-specific RPs. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3607940_d5.v1
title: Additional file 6: Table S5. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: Summary of SNPs effect in M. dubia. (CSV 576 bytes)
DOI: 10.6084/m9.figshare.c.3607940_d6.v1
title: Additional file 3: Table S2. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: Genic-SSR characteristics of M. dubia. (CSV 330 kb)
DOI: 10.6084/m9.figshare.c.3607940_d7.v1
title: Additional file 1: Table S1. of 
                     De novo assembly and functional annotation of Myrciaria dubia fruit transcriptome reveals multiple metabolic pathways for L-ascorbic acid biosynthesis

description: KEEG Pathway list in transcriptome of M. dubia. (CSV 6 kb)
DOI: 10.15468/dl.5qu2ke
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Indonesia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Kallymeniaceae"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037538-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3607979_d6.v1
title: Additional file 10: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Genic effects of Lycaon MSY coding sequence variants. (XLSX 55Â kb)
DOI: 10.6084/m9.figshare.c.3607922_d14.v1
title: MOESM1 of Natural diversity of cellulases, xylanases, and chitinases in bacteria

description: Additional file 1. Domain annotation of proteins with GH domain targeting cellulose, xylan, and chitin identified in sequenced bacterial genomes.
DOI: 10.6084/m9.figshare.c.3608009_d2.v1
title: Additional file 3: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: Primers used in this study together with their efficiency values. (XLSX 50 kb)
DOI: 10.6084/m9.figshare.c.3607979_d7.v1
title: Additional file 1: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Genic effects of SnpEff-annotated autosomal and X-chromosomal variants for the Kenyan Lycaon individual. (HTML 1596Â kb)
DOI: 10.6084/m9.figshare.c.3608009_d3.v1
title: Additional file 5: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: qPCR results for P. philander. (XLSX 251 kb)
DOI: 10.6084/m9.figshare.c.3607979_d8.v1
title: Additional file 5: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Positive selection test results on the Lycaon mitochondrial genome. Z statistics are included in parentheses after the probability for each of the three competing models (Neutrality, Positive Selection, Purifying Selection). Results for the tests excluding the domestic dog sequence are denoted by ‘Lycaon’ in the column heading. (XLSX 48 kb)
DOI: 10.6084/m9.figshare.c.3608009_d4.v1
title: Additional file 2: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: Gene ontology annotation for the DE genes. (XLSX 148 kb)
DOI: 10.6084/m9.figshare.c.3607979_d9.v1
title: Additional file 3: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: DAVID-annotated enriched functional processes for the Kenyan Lycaon individual. For each functional term, the total gene count, the associated genes, and the Benjamini-Hochberg false discovery rate value are given. (XLSX 23Â kb)
DOI: 10.6084/m9.figshare.c.3607979_d10.v1
title: Additional file 9: of Genome sequence, population history, and pelage genetics of the endangered African wild dog (Lycaon pictus)

description: Autosomal BUSCO orthologs identified in the South African Lycaon pictus genome. Scaffolds are identified by GenBank accession. (XLSX 170Â kb)
DOI: 10.6084/m9.figshare.c.3608009_d5.v1
title: Additional file 1: of Comparative transcriptomics of anal fin pigmentation patterns in cichlid fishes

description: Identity of the differential expressed genes between egg-spot and anal fin tissue together with the expression values and dN/dS estimations. (XLSX 222 kb)
DOI: 10.6084/m9.figshare.c.3608045_d2.v1
title: MOESM1 of HIA: a genome mapper using hybrid index-based sequence alignment

description: Additional file 1. It includes the test datasets, all tested results, and information of all used tools.