cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.53sq7kn
title: Data from: Extrinsic and intrinsic dynamics in movement intermittency

description: What determines how we move in the world? Motor neuroscience often
 focusses either on intrinsic rhythmical properties of motor circuits or
 extrinsic sensorimotor feedback loops. Here we show that the interplay of
 both intrinsic and extrinsic dynamics is required to explain the
 intermittency observed in continuous tracking movements. Using
 spatiotemporal perturbations in humans, we demonstrate that apparently
 discrete submovements made 2-3 times per second reflect constructive
 interference between motor errors and continuous feedback corrections that
 are filtered by intrinsic circuitry in the motor system. Local field
 potentials in monkey motor cortex revealed characteristic signatures of a
 Kalman filter, giving rise to both low-frequency cortical cycles during
 movement, and delta oscillations during sleep. We interpret these results
 within the framework of optimal feedback control, and suggest that the
 intrinsic rhythmicity of motor cortical networks reflects an internal
 model of external dynamics, which is used for state estimation during
 feedback-guided movement.
description: Dataset 1 - Human
 tracking with feedback delaysThis dataset contains
 behavioural data from 8 human subjects performing isometric visuomotor
 tracking with feedback delays between 0-500 ms.Experiment1.matDataset 2 - Human tracking with perturbations and feedback delaysThis dataset contains behavioural data from 8 human subjects performing an isometric visuomotor tracking experiment with 0-5 Hz perturbations and 0 or 200ms feedback delays.Experiment2.matDataset 3 - Monkey tracking with feedback delaysThis dataset contains behavioural and electrophysiological data from a monkey performing visuomotor tracking with feedback delays of 0-600ms.Experiment3.matDataset 4 - Monkey tracking with feedback delaysThis dataset contains behavioural and electrophysiological data from a second monkey performing visuomotor tracking with feedback delays of 0-600ms.Experiment4.matAnalysis code for Dataset 1Sample analysis code to calculate power spectra of cursor angular velocity for all subjects in Dataset 1.analyse1.mAnalysis code for Dataset 2Sample analysis code to calculate cursor and force power spectra, amplitude responses and phase delays for all subjects in Dataset 2.analyse2.mAnalysis code for Dataset 3Sample analysis code to calculate cursor and local field potential power spectra, cursor-LFP coherence and LFP-LFP imaginary coherence spectra for all sessions in Dataset 3.analyse3.mAnalysis code for Dataset 4Sample analysis code to calculate cursor and local field potential power spectra, cursor-LFP coherence and LFP-LFP imaginary coherence spectra for all sessions in Dataset 4analyse4.mOptimal Feedback Control modelCode to calculate transfer functions for an optimal feedback controller incorporating state estimation using delayed feedback. The code plots cursor and force amplitude responses and phase delay.ofc_model.m
DOI: 10.5061/dryad.kd5s9
title: Data from: The ecology of herbivore-induced silicon defences in grasses

description: Silicon as a defence against herbivory in grasses has gained increasing
 recognition and has now been studied in a wide range of species, at scales
 from individual plants in pots to plant communities in the field. The
 impacts of these defences have been assessed on herbivores ranging from
 insects to rodents to ungulates. Here, we review current knowledge of
 silicon mediation of plant–herbivore interactions in an ecological
 context. The production of silicon defences by grasses is affected by both
 abiotic and biotic factors and by their interactions. Climate, soil type
 and water availability all influence levels of silicon uptake, as does
 plant phenology and previous herbivory. The type of defoliation matters
 and artificial clipping does not appear to have the same impact on silicon
 defence induction as herbivory which includes the presence of saliva.
 Induction of silicon defences has been demonstrated to require a threshold
 level of damage, both in the laboratory and in the field. In recent
 studies of vole–plant interactions, the patterns of induction were found
 to be quantitatively similar in glasshouse compared with field
 experiments, in terms of both the threshold required for induction and
 timing of the induction response. The impacts of silicon defences differ
 between different classes of herbivore, possibly reflecting differences in
 body size, feeding behaviour and digestive physiology. General patterns
 are hard to discern however, and a greater number of studies on wild
 mammalian herbivores are required to elucidate these, particularly with an
 inclusion of major groups for which there are currently no data, one such
 example being marsupials. We highlight new research areas to address what
 still remains unclear about the role of silicon as a plant defence,
 particularly in relation to plant–herbivore interactions in the field,
 where the effects of grazing on defence induction are harder to measure.
 We discuss the obstacles inherent in scaling up laboratory work to
 landscape-scale studies, the most ecologically relevant but most difficult
 to carry out, which is the next challenge in silicon ecology.
description: Silica induction in
 response to vole grazing in field and glasshouseData on silica
 concentrations in Deschampsia cespitosa in response to varying intensities
 of field vole grazing pressure in outdoor field enclosures at Kielder
 Forest England between March 2009 and April 2010 and in glasshouse
 experiments.DeGabriel_field and glasshouse
 Si induction data.xlsx
DOI: 10.17611/dp/19061151
title: Global ShakeMovie synthetic for May 25, 2021 MW 5.8 TONGA ISLANDS
DOI: 10.15468/dl.sgypzq
title: Occurrence Download

description: A dataset containing 4031 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Hong Kong, Macao)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Platalea minor",
 "Year 2020-2025"
 ]
}

 The dataset includes 4031 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027453-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/19073994
title: Global ShakeMovie synthetic for May 29, 2021 MW 5.5 NEAR EAST COAST OF HONSHU, JAPAN
DOI: 10.17611/dp/19073998
title: Global ShakeMovie synthetic for May 30, 2021 MW 5.9 PACIFIC-ANTARCTIC RIDGE
DOI: 10.17611/dp/19074002
title: Global ShakeMovie synthetic for May 31, 2021 MW 6.1 CENTRAL ALASKA
DOI: 10.17611/dp/19080902
title: Global ShakeMovie synthetic for June 01, 2021 MW 5.6 SOUTH OF PANAMA
DOI: 10.17611/dp/19086927
title: Global ShakeMovie synthetic for June 03, 2021 MW 6.2 NORTHERN MOLUCCA SEA
DOI: 10.17611/dp/19086931
title: Global ShakeMovie synthetic for June 04, 2021 MW 5.9 OFF COAST OF OREGON
DOI: 10.17611/dp/19086935
title: Global ShakeMovie synthetic for June 04, 2021 MW 6.0 OFF COAST OF OREGON
DOI: 10.17611/dp/19090137
title: Global ShakeMovie synthetic for June 04, 2021 MW 5.5 NORTHERN MOLUCCA SEA
DOI: 10.17611/dp/19090141
title: Global ShakeMovie synthetic for June 05, 2021 MW 5.3 REYKJANES RIDGE
DOI: 10.17611/dp/19090145
title: Global ShakeMovie synthetic for June 05, 2021 MW 5.3 SOUTHERN CALIFORNIA
DOI: 10.17611/dp/19090149
title: Global ShakeMovie synthetic for June 06, 2021 MW 5.7 FIJI ISLANDS REGION
DOI: 10.17611/dp/19090153
title: Global ShakeMovie synthetic for June 06, 2021 MW 5.8 KERMADEC ISLANDS REGION
DOI: 10.17611/dp/19091663
title: Global ShakeMovie synthetic for June 08, 2021 MW 5.8 NEW BRITAIN REGION, P.N.G.
DOI: 10.17611/dp/19093911
title: Global ShakeMovie synthetic for June 11, 2021 MW 5.5 SOUTHERN MOLUCCA SEA
DOI: 10.17611/dp/19096213
title: Global ShakeMovie synthetic for June 14, 2021 MW 5.5 EASTERN GULF OF ADEN
DOI: 10.17611/dp/19098455
title: Global ShakeMovie synthetic for June 17, 2021 MW 5.5 TONGA ISLANDS REGION
DOI: 10.17611/dp/19102503
title: Global ShakeMovie synthetic for June 19, 2021 MW 5.8 FIJI ISLANDS REGION
DOI: 10.17611/dp/19102507
title: Global ShakeMovie synthetic for June 20, 2021 MW 6.5 KERMADEC ISLANDS, NEW ZEALAND
DOI: 10.17611/dp/19102511
title: Global ShakeMovie synthetic for June 21, 2021 MW 5.5 MARIANA ISLANDS
DOI: 10.17611/dp/19102515
title: Global ShakeMovie synthetic for June 21, 2021 MW 5.9 KERMADEC ISLANDS, NEW ZEALAND
DOI: 10.17611/dp/19102519
title: Global ShakeMovie synthetic for June 21, 2021 MW 5.5 DODECANESE ISLANDS, GREECE
DOI: 10.17611/dp/19104017
title: Global ShakeMovie synthetic for June 23, 2021 MW 5.8 NEAR COAST OF PERU
DOI: 10.17611/dp/19104765
title: Global ShakeMovie synthetic for June 24, 2021 MW 5.8 BANDA SEA
DOI: 10.17611/dp/19107007
title: Global ShakeMovie synthetic for June 16, 2021 MW 5.9 SERAM, INDONESIA
DOI: 10.17611/dp/19107011
title: Global ShakeMovie synthetic for June 23, 2021 MW 5.7 SOUTHEAST OF LOYALTY ISLANDS
DOI: 10.17611/dp/19107015
title: Global ShakeMovie synthetic for June 26, 2021 MW 5.5 NORTHERN MID-ATLANTIC RIDGE
DOI: 10.17611/dp/19113774
title: Global ShakeMovie synthetic for July 03, 2021 MW 5.5 OWEN FRACTURE ZONE REGION
DOI: 10.17611/dp/19113778
title: Global ShakeMovie synthetic for July 04, 2021 MW 5.9 NEAR COAST OF CENTRAL CHILE
DOI: 10.17611/dp/19113782
title: Global ShakeMovie synthetic for July 04, 2021 MW 5.6 OFF COAST OF CENTRAL MEXICO
DOI: 10.17611/dp/19114530
title: Global ShakeMovie synthetic for July 03, 2021 MW 5.8 SOUTHEAST INDIAN RIDGE
DOI: 10.15468/dl.3zbw6y
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is El Salvador",
 "Geometry POLYGON((-92.98796 12.35170,-85.94768 12.35170,-85.94768 15.16420,-92.98796 15.16420,-92.98796 12.35170))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pistia stratiotes"
 ]
}

 The dataset includes 41 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027454-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/19114534
title: Global ShakeMovie synthetic for July 04, 2021 MW 6.1 NEAR COAST OF CENTRAL CHILE
DOI: 10.17611/dp/19115501
title: Global ShakeMovie synthetic for July 02, 2021 MW 6.1 FIJI ISLANDS REGION
DOI: 10.17611/dp/19118674
title: Global ShakeMovie synthetic for July 07, 2021 MW 5.9 SOUTH OF FIJI ISLANDS
DOI: 10.17611/dp/19119666
title: Global ShakeMovie synthetic for July 08, 2021 MW 5.6 WEST OF MACQUARIE ISLAND
DOI: 10.17611/dp/19122012
title: Global ShakeMovie synthetic for July 09, 2021 MW 5.6 PACIFIC-ANTARCTIC RIDGE
DOI: 10.17611/dp/19122016
title: Global ShakeMovie synthetic for July 09, 2021 MW 5.7 MINAHASSA PENINSULA, SULAWESI
DOI: 10.17611/dp/19122020
title: Global ShakeMovie synthetic for July 10, 2021 MW 6.2 TALAUD ISLANDS, INDONESIA
DOI: 10.17611/dp/19122024
title: Global ShakeMovie synthetic for July 10, 2021 MW 5.8 AFGHANISTAN-TAJIKISTAN BORD REG.
DOI: 10.15468/dl.7es8h7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syngonium podophyllum",
 "Country is Tonga",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027455-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17611/dp/19123522
title: Global ShakeMovie synthetic for July 13, 2021 MW 5.7 KURIL ISLANDS
DOI: 10.17611/dp/19123526
title: Global ShakeMovie synthetic for July 13, 2021 MW 5.5 SOUTHEAST OF LOYALTY ISLANDS
DOI: 10.17611/dp/19126277
title: Global ShakeMovie synthetic for July 16, 2021 MW 5.4 SOUTHEAST OF HONSHU, JAPAN
DOI: 10.15468/dl.ute3ua
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Xenodermichthys copei (Gill, 1884)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((36.2225 24.1647,35.9648 24.4806,35.9648 19.8496,37.7519 19.8496,37.7005 20.2556,37.7935 21.209,37.3891 21.7756,37.3588 22.2459,36.8499 22.7968,36.6611 23.2461,36.1736 23.4033,36.31 23.7463,36.2225 24.1647))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010538-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ntk5k4
title: Occurrence Download

description: A dataset containing 3229 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Inga edulis"
 ]
}

 The dataset includes 3229 records from 191 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008388-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4xnj5t
title: Occurrence Download

description: A dataset containing 618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Linum leonii, Linum ockendonii, Linum perenne, Linum perenne, Linum perenne, Linum perenne, Linum montanum, Linum montanum, Linum montanum, Linum montanum, Linum bavaricum)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 618 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008389-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w35h6p
title: Occurrence Download

description: A dataset containing 65 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amomyrtella guili",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 65 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008391-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14699498
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Percy James Greenway, http://www.wikidata.org/entity/Q21340663. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21340663
DOI: 10.5281/zenodo.18463166
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Percy James Greenway, http://www.wikidata.org/entity/Q21340663. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21340663
DOI: 10.15468/dl.mft2zn
title: Occurrence Download

description: A dataset containing 16939 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "NetworkKey is 99d66b6c-9087-452f-a9d4-f15f2c2d0e7e",
 "TaxonKey is Chordata"
 ]
 },
 "TaxonKey is one of (Lynx rufus [GBIF Backbone Taxonomy])"
 ]
}

 The dataset includes 16939 records from 128 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008390-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18463185
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by John Lhotsky, http://www.wikidata.org/entity/Q9012388. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q9012388
DOI: 10.5281/zenodo.8166431
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by John Lhotsky, http://www.wikidata.org/entity/Q9012388. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q9012388
DOI: 10.5281/zenodo.18463190
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Leonora Gloyd, http://www.wikidata.org/entity/Q100694962. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q100694962
DOI: 10.5281/zenodo.8053131
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Leonora Gloyd, http://www.wikidata.org/entity/Q100694962. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q100694962
DOI: 10.15468/dl.hexndp
title: Occurrence Download

description: A dataset containing 713 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acropora donei"
 ]
}

 The dataset includes 713 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008393-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5qk6vg
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amomyrtus meli",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 23 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008395-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rf37yy
title: Occurrence Download

description: A dataset containing 1422 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Linum tenuifolium, Linum tenuifolium, Linum tenuifolium, Linum tenuifolium)",
 "Year is greater than or equal to 1900",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 1422 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008394-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18421367
title: Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother's milk

description: Supplementary Tables for the publication: "Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk" - Ferretti and Allert et al. Nature Communications 2025

The establishment of the gut microbiome in early life is critical for healthy infant development. Although human milk is recommended as sole nutrition for the infant, little is known about how variation in the milk microbiome shapes the microbial communities in the infant gut. Here, we quantified the similarity between the maternal milk and the infant gut microbiomes using 507 metagenomic samples collected from 195 mother-infant pairs at one, three, and six months postpartum. Microbial taxonomic overlap between milk and the infant gut was driven by Bifidobacterium longum, and infant microbiomes dominated by B. longum showed greater temporal stability than those dominated by other species. We identified numerous instances of strain sharing between milk and the infant gut, involving both commensal (e.g. B. longum) and pathobiont species (e.g. K. pneumoniae). Shared strains also included typically oral species such as S. salivarius and V. parvula, suggesting possible transmission from the infant’s oral cavity to the mother’s milk. At one month, the infant gut microbiome was enriched in biosynthetic pathways, suggesting that early colonisers might be more metabolically independent than those present at six months. Lastly, we observed significant overlap in antimicrobial resistance gene carriage within mother-infant pairs. Together, our results suggest that the human milk microbiome has an important role in the assembly, composition, and stability of the infant gut microbiome. 

More info at: https://github.com/blekhmanlab/milk_infant_microbiome
DOI: 10.5281/zenodo.17089802
title: Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother's milk

description: Supplementary Tables for the publication: "Assembly of the infant gut microbiome and resistome are linked to bacterial strains in mother’s milk" - Ferretti and Allert et al. Nature Communications 2025

The establishment of the gut microbiome in early life is critical for healthy infant development. Although human milk is recommended as sole nutrition for the infant, little is known about how variation in the milk microbiome shapes the microbial communities in the infant gut. Here, we quantified the similarity between the maternal milk and the infant gut microbiomes using 507 metagenomic samples collected from 195 mother-infant pairs at one, three, and six months postpartum. Microbial taxonomic overlap between milk and the infant gut was driven by Bifidobacterium longum, and infant microbiomes dominated by B. longum showed greater temporal stability than those dominated by other species. We identified numerous instances of strain sharing between milk and the infant gut, involving both commensal (e.g. B. longum) and pathobiont species (e.g. K. pneumoniae). Shared strains also included typically oral species such as S. salivarius and V. parvula, suggesting possible transmission from the infant’s oral cavity to the mother’s milk. At one month, the infant gut microbiome was enriched in biosynthetic pathways, suggesting that early colonisers might be more metabolically independent than those present at six months. Lastly, we observed significant overlap in antimicrobial resistance gene carriage within mother-infant pairs. Together, our results suggest that the human milk microbiome has an important role in the assembly, composition, and stability of the infant gut microbiome. 

More info at: https://github.com/blekhmanlab/milk_infant_microbiome