cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1533308.v6
title: Malzer I, Helm B., "The seasonal dynamics of artificial nest predation rates along edges in a mosaic managed reedbed." Plos One

description: Data from Malzer I, Helm B., "The seasonal dynamics of artificial nest predation rates along edges in a mosaic managed reedbed." Plos One.
DOI: 10.6084/m9.figshare.1533116
title: Interlink Data

description: Interlink Data by Issuecrawler used for further analysis
DOI: 10.6084/m9.figshare.1533115
title: Co-Link Data

description: Co-Link data used for further analysis
DOI: 10.6084/m9.figshare.1533116.v1
title: Interlink Data

description: Interlink Data by Issuecrawler used for further analysis
DOI: 10.6084/m9.figshare.1533308.v7
title: Malzer I, Helm B., "The seasonal dynamics of artificial nest predation rates along edges in a mosaic managed reedbed." Plos One

description: Data from Malzer I, Helm B., "The seasonal dynamics of artificial nest predation rates along edges in a mosaic managed reedbed." Plos One.
DOI: 10.6084/m9.figshare.1533109
title: The tragedy of the commons and prisoner's dilemma may improve our realization of the theory of life and provide us with advanced therapeutic ways

description: Maintenance of cooperative traits is a critical question in evolutionary theory, especially when the social dilemma, generated by the interface between cooperators and cheaters, is invoked. Since the 1960s, a large body of literature has focused on this topic and suggested various solutions. However, despite the great effort of evolutionary biologists, the arguments advanced are only partial and never seem to offer a conclusive answer. Nevertheless, it seems that the only generalizable solution is ‘consciousintervention’ as illustrated in the article. The findings implied by the following theoretical analysis have important therapeutic applications. They also represent a promising direction for future studies on invasive engineered ‘cheaters’ having plasmids carrying self-interested traits invading biofilms of pathogenic bacteria ‘cooperators’. In fact, this perspective approach can be extended to the treatment of viral diseases and cancer
DOI: 10.6084/m9.figshare.1533115.v1
title: Co-Link Data

description: Co-Link data used for further analysis
DOI: 10.6084/m9.figshare.1533075
title: RNAseq_data_tables

description: RNAseq data, file name legend: condition1_vs_condition2
DOI: 10.6084/m9.figshare.1533078
title: Predicting the valence of a scene from observers' eye movements

description: This file contains the eye movement features related to the article titled "Predicting the valence of a scene from observers' eye movements"
DOI: 10.6084/m9.figshare.1533042
title: 3 - Airport Mobile Access and Mobile Apps - DATASET

description: Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.1533078.v2
title: Predicting the valence of a scene from observers' eye movements

description: This file contains the eye movement features related to the article titled "Predicting the valence of a scene from observers' eye movements"
DOI: 10.6084/m9.figshare.1533037
title: 140714 - Airport Access - EU Airports iPhone Evaluation

description: Includes the evaluation of of 31 European airports iPhone Apps. This includes general evaluation as well as specific evaluation about Airport Ground Access. Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.1533078.v1
title: Valence from Eye

description: This file contains the eye movement features related to the article titled "Predicting the valence of a scene from observers' eye movements"
DOI: 10.6084/m9.figshare.1533034
title: Metadata and data for https://doi.org/10.1128/AEM.03128-15

description: <strong>Publication reference:</strong> Hogle SL, Cameron Thrash J, Dupont CL, Barbeau KA. Trace metal acquisition by marine heterotrophic bacterioplankton with contrasting trophic strategies. Appl Environ Microbiol. 2016. 82:1613–24. <b>File Descriptions: </b>Supplemental_material.pdf - Supplemental methods, results, tables, figures, and referencesDataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundanceDataset2.xlsx - CDD/PFAM/COGs used to identify metal transportersDataset3.xlsx - Predicted Fur boxesDataset4.xlsx - COGs used for phylogenetic tree constructionDataset5.xlsx - TonB dependent receptor genome neighborhoods and Markov Clustering parametersDataset6.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.1533038.v1
title: Cell-Cycle-on-C1

description: This is the source code repository of the Scientific Data descriptor "Single-cell transcriptomes of fluorescent, ubiquitination-based cell cycle indicator cells"
DOI: 10.6084/m9.figshare.1533042.v1
title: Airport Mobile Access and Mobile Apps - DATASET

description: Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.1532940
title: Planomicrobium glaciei UCD-HAM phylogenetic tree

description: Phylogenetic tree of <em>Planomicrobium glaciei UCD-HAM.</em>
DOI: 10.6084/m9.figshare.1533037.v2
title: 140714 - Airport Access - EU Airports iPhone Evaluation

description: Includes the evaluation of of 31 European airports iPhone Apps. This includes general evaluation as well as specific evaluation about Airport Ground Access. Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.1533042.v3
title: 3 - Airport Mobile Access and Mobile Apps - DATASET

description: Data used on the Paper: Martin-Domingo, L., & Martin, J. C. (2015). Airport Surface Access and Mobile Apps. Journal of Airline and Airport Management, 5(1), 1–17. http://doi.org/10.3926/jairm.38
DOI: 10.6084/m9.figshare.1532940.v1
title: Planomicrobium glaciei UCD-HAM phylogenetic tree

description: Phylogenetic tree of <em>Planomicrobium glaciei UCD-HAM.</em>
DOI: 10.6084/m9.figshare.1532008
title: IAT_Stimuli

description: In this folder there are the stimuli used in Experiment 1.
DOI: 10.6084/m9.figshare.1532009
title: SRCtask_Stimuli

description: This folder contains the stimuli used in Experiment 2.
DOI: 10.6084/m9.figshare.1532006
title: Data and code for Olympia oyster local adaptation experiments

description: Datasets and R Code for two experiments assessing local adaptation in Olympia oysters: reciprocal transplant experiment in San Francisco Bay, CA, USA and low salinity tolerance laboratory experiment at Bodega Marine Laboratory, Bodega Bay, CA, USA
DOI: 10.6084/m9.figshare.1533109.v4
title: The tragedy of the commons and prisoner's dilemma may improve our realization of the theory of life and provide us with advanced therapeutic ways

description: Maintenance of cooperative traits is a critical question in evolutionary theory, especially when the social dilemma, generated by the interface between cooperators and cheaters, is invoked. Since the 1960s, a large body of literature has focused on this topic and suggested various solutions. However, despite the great effort of evolutionary biologists, the arguments advanced are only partial and never seem to offer a conclusive answer. Nevertheless, it seems that the only generalizable solution is ‘consciousintervention’ as illustrated in the article. The findings implied by the following theoretical analysis have important therapeutic applications. They also represent a promising direction for future studies on invasive engineered ‘cheaters’ having plasmids carrying self-interested traits invading biofilms of pathogenic bacteria ‘cooperators’. In fact, this perspective approach can be extended to the treatment of viral diseases and cancer
DOI: 10.6084/m9.figshare.1532009.v1
title: SRCtask_Stimuli

description: This folder contains the stimuli used in Experiment 2.
DOI: 10.6084/m9.figshare.1533034.v2
title: Supplemental material for Hogle et al. 2015 mBio

description: Title: "Trace metal acquisition by heterotrophic bacterioplankton with contrasting trophic strategies" <strong>Available at mBio website, Figshare.com, and slhogle.github.io :</strong><br>Dataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundance<br>Dataset2.xlsx - CDD/PFAM/COGs used to identify metal transporters<br>Dataset3.xlsx - Predicted FUR boxes<br>Dataset4.xlsx - COGs for Tree Construction TableS1.pdf - Metal transporter families and descriptions TableS2.pdf - TBDT Clusters and enrichment FigureS1.pdf - TRAP transporters in siderophore uptake genome neighborhoods<br>FigureS2.pdf - Network visualization of pairwise Spearman's rank correlation coefficients supplemental_text.pdf - Supplementary results and methods Available only at Figshare.com and slhogle.github.io<br>DatasetS5.xlsx - TBDT neighborhoods, and Markov Clustering parameters<br>DatasetS6.xlsx - SAR11 IMG genome cart export<br>DatasetS7.xlsx - Roseobacter IMG genome cart export<br>DatasetS8.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments<br>DatasetS9.xlsx - Pairwise false discovery rate corrected Spearman's rank correlation coefficients scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.1532008.v1
title: IAT_Stimuli

description: In this folder there are the stimuli used in Experiment 1.
DOI: 10.6084/m9.figshare.1533109.v5
title: The tragedy of the commons and prisoner's dilemma may improve our realization of the theory of life and provide us with advanced therapeutic ways

description: Maintenance of cooperative traits is a critical question in evolutionary theory, especially when the social dilemma, generated by the interface between cooperators and cheaters, is invoked. Since the 1960s, a large body of literature has focused on this topic and suggested various solutions. However, despite the great effort of evolutionary biologists, the arguments advanced are only partial and never seem to offer a conclusive answer. Nevertheless, it seems that the only generalizable solution is ‘consciousintervention’ as illustrated in the article. The findings implied by the following theoretical analysis have important therapeutic applications. They also represent a promising direction for future studies on invasive engineered ‘cheaters’ having plasmids carrying self-interested traits invading biofilms of pathogenic bacteria ‘cooperators’. In fact, this perspective approach can be extended to the treatment of viral diseases and cancer
DOI: 10.6084/m9.figshare.1533034.v3
title: Supplemental material for Hogle et al. 2015 mBio

description: <strong>Publication reference:</strong> "Trace metal acquisition by heterotrophic bacterioplankton with contrasting trophic strategies" <strong>Available at mBio website, Figshare.com, and slhogle.github.io :</strong><br>Dataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundance<br>Dataset2.xlsx - CDD/PFAM/COGs used to identify metal transporters<br>Dataset3.xlsx - Predicted FUR boxes<br>Dataset4.xlsx - COGs for Tree Construction TableS1.pdf - Metal transporter families and descriptions TableS2.pdf - TBDT Clusters and enrichment FigureS1.pdf - TRAP transporters in siderophore uptake genome neighborhoods<br>FigureS2.pdf - Network visualization of pairwise Spearman's rank correlation coefficients supplemental_text.pdf - Supplementary results and methods <strong>Available only at Figshare.com and slhogle.github.io</strong><br>DatasetS5.xlsx - TBDT neighborhoods, and Markov Clustering parameters<br>DatasetS6.xlsx - SAR11 IMG genome cart export<br>DatasetS7.xlsx - Roseobacter IMG genome cart export<br>DatasetS8.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments<br>DatasetS9.xlsx - Pairwise false discovery rate corrected Spearman's rank correlation coefficients scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.1531996
title: collision

description: Collision detection is a challenging and important multi-discipline problem in robotics, medical analysis and most importantly video games. Collision detection is not just a true or false answer to the question if two objects are touching, it is essential to detect the physical geometric data between objects and the environment accurately, such as, contact points, penetration depths, and separating normals. In fact, not only does the collision data need to be accurate for games, it needs to be fast. We explain collision detection algorithm principles and implementation details for use in interactive environments and physic-based simulators. We explain basic mathematical concepts and geometric principles (e.g., vectors, cross product, and plane equation). This textbook is designed to introduce the reader to the exciting topic of collision detection in virtual environments from a practical perspective. Organized around the central concept of collision detection, the book includes numerous practical examples in the body of the text as well as explaining technical limitations and engineering solutions. It is also one of the purposes of this book to introduce the reader to the development aspect of game and real-time interactive software.
DOI: 10.6084/m9.figshare.1531984
title: Game Collision Detection

description: Collision detection is a challenging and important multi-discipline problem in robotics, medical analysis and most importantly video games. Collision detection is not just a true or false answer to the question if two objects are touching, it is essential to detect the physical geometric data between objects and the environment accurately, such as, contact points, penetration depths, and separating normals. In fact, not only does the collision data need to be accurate for games, it needs to be fast. We explain collision detection algorithm principles and implementation details for use in interactive environments and physic-based simulators. We explain basic mathematical concepts and geometric principles (e.g., vectors, cross product, and plane equation). This textbook is designed to introduce the reader to the exciting topic of collision detection in virtual environments from a practical perspective. Organized around the central concept of collision detection, the book includes numerous practical examples in the body of the text as well as explaining technical limitations and engineering solutions. It is also one of the purposes of this book to introduce the reader to the development aspect of game and real-time interactive software.
DOI: 10.6084/m9.figshare.1531996.v1
title: collision

description: Collision detection is a challenging and important multi-discipline problem in robotics, medical analysis and most importantly video games. Collision detection is not just a true or false answer to the question if two objects are touching, it is essential to detect the physical geometric data between objects and the environment accurately, such as, contact points, penetration depths, and separating normals. In fact, not only does the collision data need to be accurate for games, it needs to be fast. We explain collision detection algorithm principles and implementation details for use in interactive environments and physic-based simulators. We explain basic mathematical concepts and geometric principles (e.g., vectors, cross product, and plane equation). This textbook is designed to introduce the reader to the exciting topic of collision detection in virtual environments from a practical perspective. Organized around the central concept of collision detection, the book includes numerous practical examples in the body of the text as well as explaining technical limitations and engineering solutions. It is also one of the purposes of this book to introduce the reader to the development aspect of game and real-time interactive software.
DOI: 10.6084/m9.figshare.1531974
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figure 9

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1533034.v4
title: Supplemental material for Hogle et al. 2015 submitted to Applied and Environmental Microbiology

description: <strong>Publication reference:</strong> "Trace metal acquisition by heterotrophic bacterioplankton with contrasting trophic strategies" <strong>Available at AEM website, Figshare.com, and slhogle.github.io :</strong><br>Dataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundance<br>Dataset2.xlsx - CDD/PFAM/COGs used to identify metal transporters<br>Dataset3.xlsx - Predicted FUR boxes<br>Dataset4.xlsx - COGs for Tree Construction TableS1.pdf - Metal transporter families and descriptions TableS2.pdf - TBDT Clusters and enrichment FigureS1.pdf - TRAP transporters in siderophore uptake genome neighborhoods<br>FigureS2.pdf - Network visualization of pairwise Spearman's rank correlation coefficients supplemental_text.pdf - Supplementary results and methods <strong>Available only at Figshare.com and slhogle.github.io</strong><br>DatasetS5.xlsx - TBDT neighborhoods, and Markov Clustering parameters<br>DatasetS6.xlsx - SAR11 IMG genome cart export<br>DatasetS7.xlsx - Roseobacter IMG genome cart export<br>DatasetS8.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments<br>DatasetS9.xlsx - Pairwise false discovery rate corrected Spearman's rank correlation coefficients scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.1531973
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figure 3 5 6 and 7

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1533109.v7
title: The tragedy of the commons and prisoner's dilemma may improve our realization of the theory of life and provide us with advanced therapeutic ways

description: Maintenance of cooperative traits is a critical question in evolutionary theory, especially when the social dilemma, generated by the interface between cooperators and cheaters, is invoked. Since the 1960s, a large body of literature has focused on this topic and suggested various solutions. However, despite the great effort of evolutionary biologists, the arguments advanced are only partial and never seem to offer a conclusive answer. Nevertheless, it seems that the only generalizable solution is ‘consciousintervention’ as illustrated in the article. The findings implied by the following theoretical analysis have important therapeutic applications. They also represent a promising direction for future studies on invasive engineered ‘cheaters’ having plasmids carrying self-interested traits invading biofilms of pathogenic bacteria ‘cooperators’. In fact, this perspective approach can be extended to the treatment of viral diseases and cancer
DOI: 10.6084/m9.figshare.1531972
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figures 4 and 8

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531973.v2
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figure 3 5 6 and 7

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531974.v1
title: Figure 9

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1533034.v5
title: Supplemental material for Hogle et al. (2016) "Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies" Appl. Env. Microbiol.

description: <strong>Publication reference:</strong> "Trace Metal Acquisition by Marine Heterotrophic Bacterioplankton with Contrasting Trophic Strategies" Appl. Env. Microbiol.Files and documented code are additionally available from - http://slhogle.github.io/TM_roseo_sar/ <b>File Descriptions: </b>Supplemental_material.pdf - Supplemental methods, results, tables, figures, and referencesDataset1.xlsx - Genome features, Genome completion, environmental characteristics, transporter abundanceDataset2.xlsx - CDD/PFAM/COGs used to identify metal transportersDataset3.xlsx - Predicted Fur boxesDataset4.xlsx - COGs used for phylogenetic tree constructionDataset5.xlsx - TonB dependent receptor genome neighborhoods and Markov Clustering parametersDataset6.xlsx - Particle associated versus free-living lifestyle assignments and references used to make assignments scripts - folder with scripts and markdown used to do analysis
DOI: 10.6084/m9.figshare.1531969
title: MAPPS

description: Description: Machine Assisted Plant Positioning System (MAPPS) is a multi-part python and imageCV project intended to help ecologists make to-scale maps of plant communities in study plots.
DOI: 10.6084/m9.figshare.1531972.v2
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figures 4 and 8

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531974.v3
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium Figure 9

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531974.v2
title: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardiumgure 9

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531972.v1
title: Figures 4 and 8

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531973.v1
title: Figure 3 5 6 and 7

description: Molecular cloning and functional expression of the equine K+ channel KV11.1 (ether à go-go-related/KCNH2 gene) and the regulatory subunit KCNE2 from equine myocardium
DOI: 10.6084/m9.figshare.1531966
title: The permeability of active subduction plate boundary faults

description: Table 1 from Geofluids paper The permeability of active subduction plate boundary faults