cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1572290.v1
title: Matlab functions for CSF of various transforms

description: This data contains the matlab functions and .mat files containing the CSF of various transforms
DOI: 10.6084/m9.figshare.1572277
title: Tenthredo leleji Taeger, Wei & Shinohara, 2016, paratype, small specimen

description: <i><b>Tenthredo leleji</b></i> Taeger, Wei & Shinohara, 2016, paratype, small specimen<br><br>A. Taeger, M. Wei, A. Shinohara (2016): Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa. EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br><br><br><br>
DOI: 10.6084/m9.figshare.1572292.v2
title: Who Tweets with Their Location? Understanding the Relationship Between Demographic Characteristics and the Use of Geoservices and Geotagging on Twitter

description: 'Dataset2' associated with: Who Tweets with Their Location? Understanding the Relationship Between Demographic Characteristics and the Use of Geoservices and Geotagging on Twitter Luke Sloan and Jeffrey Morgan.
DOI: 10.6084/m9.figshare.1572277.v1
title: Tenthredo leleji Taeger, Wei & Shinohara, 2016, paratype, small specimen

description: <i><b>Tenthredo leleji</b></i> Taeger, Wei & Shinohara, 2016, paratype, small specimen<br><br>A. Taeger, M. Wei, A. Shinohara (2016): Sibling species in Tenthredo Linné (Hymenoptera: Tenthredinidae): the status of some East Asian taxa. EUROASIAN ENTOMOLOGICAL JOURNAL 15(Suppl. 1): 156-164, 2016<br><br><br><br>
DOI: 10.6084/m9.figshare.1572258
title: The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars

description: This fileset contains figures and tables discussed throughout the paper "The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars" submitted to JURIX 2015, the 28th International Conference on Legal Knowledge and Information Systems.
DOI: 10.6084/m9.figshare.1572261
title: Glacial geomorphology of the Skálafellsjökull foreland, Iceland: A case study of ‘annual’ moraines

description: Small-scale recessional push moraines are a characteristic signature of the active temperate glacial landsystem, and are often clearly linked to annual re-advances. These recessional push moraines represent a potentially valuable terrestrial climate archive, and may provide valuable insights into glacier dynamics. This paper presents detailed glacial geomorphological maps of recessional push moraines on the foreland of Skálafellsjökull, SE Iceland. Geomorphological maps have been produced at a scale of 1:3750 based on 2006 aerial photographs and 2012 satellite imagery. Using unmanned aerial vehicle-captured imagery, large-scale sample mapping of two selected areas of the glacier foreland has also been conducted, with the maps reproduced as A4-sized figures at scales of ∼1:2500 and ∼1:2000, respectively. Desk- and field-based mapping reveals suites of recessional push moraines distributed across the glacier foreland, often found in close association with flutings. Moraines on the foreland typically display distinctive ‘sawtooth' planform geometries, with complexities in the pattern occurring due to localised superimposition. The inventory of glacial geomorphological maps presented here provides a framework for subsequently exploring the characteristics of the recessional push moraines and recent ice-marginal fluctuations at Skálafellsjökull.
DOI: 10.6084/m9.figshare.1572261.v1
title: Glacial geomorphology of the Skálafellsjökull foreland, Iceland: A case study of ‘annual’ moraines

description: Small-scale recessional push moraines are a characteristic signature of the active temperate glacial landsystem, and are often clearly linked to annual re-advances. These recessional push moraines represent a potentially valuable terrestrial climate archive, and may provide valuable insights into glacier dynamics. This paper presents detailed glacial geomorphological maps of recessional push moraines on the foreland of Skálafellsjökull, SE Iceland. Geomorphological maps have been produced at a scale of 1:3750 based on 2006 aerial photographs and 2012 satellite imagery. Using unmanned aerial vehicle-captured imagery, large-scale sample mapping of two selected areas of the glacier foreland has also been conducted, with the maps reproduced as A4-sized figures at scales of ∼1:2500 and ∼1:2000, respectively. Desk- and field-based mapping reveals suites of recessional push moraines distributed across the glacier foreland, often found in close association with flutings. Moraines on the foreland typically display distinctive ‘sawtooth' planform geometries, with complexities in the pattern occurring due to localised superimposition. The inventory of glacial geomorphological maps presented here provides a framework for subsequently exploring the characteristics of the recessional push moraines and recent ice-marginal fluctuations at Skálafellsjökull.
DOI: 10.6084/m9.figshare.1572258.v1
title: The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars

description: This fileset contains figures and tables discussed throughout the paper "The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars" submitted to JURIX 2015, the 28th International Conference on Legal Knowledge and Information Systems.
DOI: 10.6084/m9.figshare.1572211
title: new fileset

description: These are the data for a plos one paper on HPCGraphPartition
DOI: 10.6084/m9.figshare.1572258.v3
title: The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars

description: This fileset contains figures and tables discussed throughout the paper "The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars" submitted to JURIX 2015, the 28th International Conference on Legal Knowledge and Information Systems.
DOI: 10.6084/m9.figshare.1572211.v1
title: new fileset

description: These are the data for a plos one paper on HPCGraphPartition
DOI: 10.6084/m9.figshare.1572258.v2
title: The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars

description: This fileset contains figures and tables discussed throughout the paper "The Power Laws of the Italian Constitutional Court, and Their Relevance for Legal Scholars" submitted to JURIX 2015, the 28th International Conference on Legal Knowledge and Information Systems.
DOI: 10.6084/m9.figshare.1572178
title: Figures of predictor raster layers for Paramuricea clavata Ecological Niche Model

description: This file contains the figures of the environmental predictor raster layers used in Ecological Niche Modelling (ENM) for Paramuricea clavata across its full distribution: Mediterranean and adjacent Atlantic coasts. These are also supplied as Supplementary Information to the publication but here they can be seen more easily in detail (bigger).
DOI: 10.6084/m9.figshare.1572178.v1
title: Figures of predictor raster layers for Paramuricea clavata Ecological Niche Model

description: This file contains the figures of the environmental predictor raster layers used in Ecological Niche Modelling (ENM) for Paramuricea clavata across its full distribution: Mediterranean and adjacent Atlantic coasts. These are also supplied as Supplementary Information to the publication but here they can be seen more easily in detail (bigger).
DOI: 10.6084/m9.figshare.1572184
title: Membrane Proximal Germline Variants.rar

description: Human transmembrane proximal variants found in germline and somatic tissues. The variations are selected only for type I membrane proteins.<br>
DOI: 10.6084/m9.figshare.1572182
title: Computerized methods for collecting confidence ratings: Task influences on patterns of responding: Dataset

description: Retrospective confidence ratings and other judgments frequently are collected in computer-based psychology studies, but little research has investigated whether the method with which these ratings are collected influences the resulting data. To explore whether different confidence rating entry methods elicit different responses, 96 subjects were tested in a recognition memory paradigm. To rate confidence in recognition decisions from 0 - 100, half of the subjects used the numeric keypad on the keyboard to respond whereas the other half used an on-screen slider. Notably, whereas subjects using the numeric keypad frequently chose to enter confidence ratings divisible by 5 and 10, subjects using the slider showed no such preference but instead were more likely to accept the slider default value (i.e., 50) for each trial. The method with which confidence ratings are collected may have unintended consequences on confidence rating data and their interpretation.
DOI: 10.6084/m9.figshare.1572184.v1
title: Membrane Proximal Germline Variants.rar

description: Human transmembrane proximal variants found in germline and somatic tissues. The variations are selected only for type I membrane proteins.<br>
DOI: 10.6084/m9.figshare.1572170
title: Transmatemática

description: Os números transreais são uma extensão dos números reais. Este novo conjunto é fechado sob as quatro operações aritméticas: adição, subtração, multiplicação e divisão. Em particular, a divisão por zero é permitida. Neste texto, contextualizamos o leitor fazendo um resumo da concepção dos números transreais. Fazemos um apanhado histórico do desenvolvimento do conceito de número. Propomos uma construção do conjunto dos números transreais, o que demonstra a consistência de sua aritmética. Desenvolvemos o cálculo transreal, estabelecendo os conceitos de topologia, sequências, limite, continuidade, derivada e integral nos números transreais. Propomos uma semântica total, isto é, uma semântica que engloba os valores lógicos clássicos, fuzzy, de contradição e de indeterminação e definimos um espaço lógico, onde proposições e mundos possíveis são objetos matemáticos bem definidos. Desta forma, podemos definir matematicamente diversos conceitos lógicos. Como, por exemplo, relações de acessibilidade, necessidade e possibilidade, transformações lógicas e um critério pra distinguir quando uma proposição é ou não clássica. Mostramos que existe um mundo possível que pode acessar qualquer outro por aproximação. Por fim, fazemos uma discussão geral sobre a transmatemática, suas novidades e o desafio de adentrar o meio acadêmico.
DOI: 10.6084/m9.figshare.1572165
title: DNA constructs.rar

description: DNA sequence files for generating expression constructs allowing recombinant purification of FGFR4, imaging of FGFR4 and STAT3 interaction and cell membrane targeting of STAT3<br><br>
DOI: 10.6084/m9.figshare.1572166
title: Confocal Imaging files.rar

description: Confocal imaging raw files obtained using Leica sp8 confocal microscope. Fluorophores: STAT3-mTURQUOISE and anti-rabbit pSTAT3 (Y705)-Alexa594<br>
DOI: 10.6084/m9.figshare.1572165.v1
title: DNA constructs.rar

description: DNA sequence files for generating expression constructs allowing recombinant purification of FGFR4, imaging of FGFR4 and STAT3 interaction and cell membrane targeting of STAT3<br><br>
DOI: 10.6084/m9.figshare.1572170.v1
title: Transmatemática

description: Os números transreais são uma extensão dos números reais. Este novo conjunto é fechado sob as quatro operações aritméticas: adição, subtração, multiplicação e divisão. Em particular, a divisão por zero é permitida. Neste texto, contextualizamos o leitor fazendo um resumo da concepção dos números transreais. Fazemos um apanhado histórico do desenvolvimento do conceito de número. Propomos uma construção do conjunto dos números transreais, o que demonstra a consistência de sua aritmética. Desenvolvemos o cálculo transreal, estabelecendo os conceitos de topologia, sequências, limite, continuidade, derivada e integral nos números transreais. Propomos uma semântica total, isto é, uma semântica que engloba os valores lógicos clássicos, fuzzy, de contradição e de indeterminação e definimos um espaço lógico, onde proposições e mundos possíveis são objetos matemáticos bem definidos. Desta forma, podemos definir matematicamente diversos conceitos lógicos. Como, por exemplo, relações de acessibilidade, necessidade e possibilidade, transformações lógicas e um critério pra distinguir quando uma proposição é ou não clássica. Mostramos que existe um mundo possível que pode acessar qualquer outro por aproximação. Por fim, fazemos uma discussão geral sobre a transmatemática, suas novidades e o desafio de adentrar o meio acadêmico.
DOI: 10.6084/m9.figshare.1572164
title: rs351855 genotyping Data.rar

description: Sanger sequencing of PCR amplicons generated using gDNA and rs351855 genotyping primers obtained from various human cancer cell lines<br>
DOI: 10.6084/m9.figshare.1572164.v1
title: rs351855 genotyping Data.rar

description: Sanger sequencing of PCR amplicons generated using gDNA and rs351855 genotyping primers obtained from various human cancer cell lines<br>
DOI: 10.6084/m9.figshare.1572155
title: Estimating the counterfactual impact of conservation programs on land cover outcomes: The role of matching and panel regression techniques

description: Data corresponding to PLOS One Manuscript "Estimating the counterfactual impact of conservation programs on land cover outcomes: The role of matching and panel regression techniques"
DOI: 10.6084/m9.figshare.1572155.v1
title: Estimating the counterfactual impact of conservation programs on land cover outcomes: The role of matching and panel regression techniques

description: Data corresponding to PLOS One Manuscript "Estimating the counterfactual impact of conservation programs on land cover outcomes: The role of matching and panel regression techniques"
DOI: 10.6084/m9.figshare.1572147
title: The Search for Significance: A Guide to P-Hacking

description: Talk given at UCL "Cognitive Drinks" 30th September 2015
DOI: 10.6084/m9.figshare.1572148
title: Constraints on the Initial-Final Mass Relation from Wide Double White Dwarfs

description: We present samples from our posterior distribution of initial-final mass relations implied by our set of wide double white dwarfs. For details on the parameterization of the initial-final mass relation and our method used to place constraints, see our forthcoming publication in the Astrophysical Journal.
DOI: 10.6084/m9.figshare.1572144
title: Vedder A, Smigielski L, Gutyrchik E, Bao Y, Blautzik J, Pöppel E, et al. (2015) Neurofunctional Correlates of Environmental Cognition: An fMRI Study with Images from Episodic Memory. PLoS ONE 10(4): e0122470. doi:10.1371/journal.pone.0122470

description: Experiment 1. SPM, 1st level. con_0001 = positive environments, con_0002 = negative environments.
DOI: 10.6084/m9.figshare.1572145
title: Vedder A, Smigielski L, Gutyrchik E, Bao Y, Blautzik J, Pöppel E, et al. (2015) Neurofunctional Correlates of Environmental Cognition: An fMRI Study with Images from Episodic Memory. PLoS ONE 10(4): e0122470. doi:10.1371/journal.pone.0122470

description: Experiment 2. SPM, 1st level. con_0001 = positive environments, con_0002 = negative environments.
DOI: 10.6084/m9.figshare.1572147.v1
title: The Search for Significance: A Guide to P-Hacking

description: Talk given at UCL "Cognitive Drinks" 30th September 2015
DOI: 10.6084/m9.figshare.1572148.v1
title: Constraints on the Initial-Final Mass Relation from Wide Double White Dwarfs

description: We present samples from our posterior distribution of initial-final mass relations implied by our set of wide double white dwarfs. For details on the parameterization of the initial-final mass relation and our method used to place constraints, see our forthcoming publication in the Astrophysical Journal.
DOI: 10.6084/m9.figshare.1572145.v1
title: Vedder A, Smigielski L, Gutyrchik E, Bao Y, Blautzik J, Pöppel E, et al. (2015) Neurofunctional Correlates of Environmental Cognition: An fMRI Study with Images from Episodic Memory. PLoS ONE 10(4): e0122470. doi:10.1371/journal.pone.0122470

description: Experiment 2. SPM, 1st level. con_0001 = positive environments, con_0002 = negative environments.
DOI: 10.6084/m9.figshare.1572141
title: OTSCC: Additional files

description: Oral tongue squamous cell carcinomas (OTSCC) are a homogeneous group of tumors characterized by aggressive behavior, early spread to lymph nodes and a higher rate of regional failure. Additionally, the incidence of OTSCC among younger population (&lt;50yrs) is on the rise; many of whom lack the typical associated risk factors of alcohol and/or tobacco exposure. We present data on single nucleotide variations (SNVs), indels, regions with loss of heterozygosity (LOH), and copy number variations (CNVs) from fifty-paired oral tongue primary tumors and link the significant somatic variants with clinical parameters, epidemiological factors including human papilloma virus (HPV) infection and tumor recurrence. Apart from the frequent somatic variants harbored in TP53, CASP8, RASA1, NOTCH and CDKN2A genes, significant amplifications and/or deletions were detected in chromosomes 6-9, and 11 in the tumors. Variants in CASP8 and CDKN2A were mutually exclusive. CDKN2A, PIK3CA, RASA1 and DMD variants were exclusively linked to smoking, chewing, HPV infection and tumor stage. We also performed a whole-genome gene expression study that identified matrix metalloproteases to be highly expressed in tumors and linked pathways involving arachidonic acid and NF-k-B to habits and distant metastasis, respectively. Functional knockdown studies in cell lines demonstrated the role of CASP8 in a HPV-negative OTSCC cell line. Finally, we identified a 38-gene minimal signature that predicts tumor recurrence using an ensemble machine-learning method. Taken together, this study links molecular signatures to various clinical and epidemiological factors in a homogeneous tumor population with a relatively high HPV prevalence.
DOI: 10.6084/m9.figshare.1572144.v1
title: Vedder A, Smigielski L, Gutyrchik E, Bao Y, Blautzik J, Pöppel E, et al. (2015) Neurofunctional Correlates of Environmental Cognition: An fMRI Study with Images from Episodic Memory. PLoS ONE 10(4): e0122470. doi:10.1371/journal.pone.0122470

description: Experiment 1. SPM, 1st level. con_0001 = positive environments, con_0002 = negative environments.
DOI: 10.6084/m9.figshare.1572141.v1
title: OTSCC: Additional files

description: Oral tongue squamous cell carcinomas (OTSCC) are a homogeneous group of tumors characterized by aggressive behavior, early spread to lymph nodes and a higher rate of regional failure. Additionally, the incidence of OTSCC among younger population (&lt;50yrs) is on the rise; many of whom lack the typical associated risk factors of alcohol and/or tobacco exposure. We present data on single nucleotide variations (SNVs), indels, regions with loss of heterozygosity (LOH), and copy number variations (CNVs) from fifty-paired oral tongue primary tumors and link the significant somatic variants with clinical parameters, epidemiological factors including human papilloma virus (HPV) infection and tumor recurrence. Apart from the frequent somatic variants harbored in TP53, CASP8, RASA1, NOTCH and CDKN2A genes, significant amplifications and/or deletions were detected in chromosomes 6-9, and 11 in the tumors. Variants in CASP8 and CDKN2A were mutually exclusive. CDKN2A, PIK3CA, RASA1 and DMD variants were exclusively linked to smoking, chewing, HPV infection and tumor stage. We also performed a whole-genome gene expression study that identified matrix metalloproteases to be highly expressed in tumors and linked pathways involving arachidonic acid and NF-k-B to habits and distant metastasis, respectively. Functional knockdown studies in cell lines demonstrated the role of CASP8 in a HPV-negative OTSCC cell line. Finally, we identified a 38-gene minimal signature that predicts tumor recurrence using an ensemble machine-learning method. Taken together, this study links molecular signatures to various clinical and epidemiological factors in a homogeneous tumor population with a relatively high HPV prevalence.
DOI: 10.6084/m9.figshare.1572140
title: Targeted proteomics of solid cancers: from quantification of known biomarkers towards reading the digital proteome maps

description: The concept of personalized medicine includes novel protein biomarkers that are expected to improve the early detection, diagnosis and therapy monitoring of malignant diseases. Tissues, biofluids, cell lines and xenograft models are the common sources of biomarker candidates that require verification of clinical value in independent patient cohorts. Targeted proteomics – based on selected reaction monitoring, or data extraction from data-independent acquisition based digital maps – now represents a promising mass spectrometry alternative to immunochemical methods. To date, it has been successfully used in a high number of studies answering clinical questions on solid malignancies: breast, colorectal, prostate, ovarian, endometrial, pancreatic, hepatocellular, lung, bladder and others. It plays an important role in functional proteomic experiments that include studying the role of post-translational modifications in cancer progression. This review summarizes verified biomarker candidates successfully quantified by targeted proteomics in this field and directs the readers who plan to design their own hypothesis-driven experiments to appropriate sources of methods and knowledge.
DOI: 10.6084/m9.figshare.1572140.v2
title: Targeted proteomics of solid cancers: from quantification of known biomarkers towards reading the digital proteome maps

description: The concept of personalized medicine includes novel protein biomarkers that are expected to improve the early detection, diagnosis and therapy monitoring of malignant diseases. Tissues, biofluids, cell lines and xenograft models are the common sources of biomarker candidates that require verification of clinical value in independent patient cohorts. Targeted proteomics – based on selected reaction monitoring, or data extraction from data-independent acquisition based digital maps – now represents a promising mass spectrometry alternative to immunochemical methods. To date, it has been successfully used in a high number of studies answering clinical questions on solid malignancies: breast, colorectal, prostate, ovarian, endometrial, pancreatic, hepatocellular, lung, bladder and others. It plays an important role in functional proteomic experiments that include studying the role of post-translational modifications in cancer progression. This review summarizes verified biomarker candidates successfully quantified by targeted proteomics in this field and directs the readers who plan to design their own hypothesis-driven experiments to appropriate sources of methods and knowledge.
DOI: 10.6084/m9.figshare.1572140.v1
title: Targeted proteomics of solid cancers: from quantification of known biomarkers towards reading the digital proteome maps

description: The concept of personalized medicine includes novel protein biomarkers that are expected to improve the early detection, diagnosis and therapy monitoring of malignant diseases. Tissues, biofluids, cell lines and xenograft models are the common sources of biomarker candidates that require verification of clinical value in independent patient cohorts. Targeted proteomics – based on selected reaction monitoring, or data extraction from data-independent acquisition based digital maps – now represents a promising mass spectrometry alternative to immunochemical methods. To date, it has been successfully used in a high number of studies answering clinical questions on solid malignancies: breast, colorectal, prostate, ovarian, endometrial, pancreatic, hepatocellular, lung, bladder and others. It plays an important role in functional proteomic experiments that include studying the role of post-translational modifications in cancer progression. This review summarizes verified biomarker candidates successfully quantified by targeted proteomics in this field and directs the readers who plan to design their own hypothesis-driven experiments to appropriate sources of methods and knowledge.