cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3644210_d1.v1
title: Additional file 8: Table S3. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Summary of all information relevant to 2,938 transcripts. This file contains the following information: gene and transcript IDs, k-means and super-cluster assignments, various transcript features related to sequence length, conserved domains, CPC and CodeWise results related to coding potential, and Mercator-based annotation. Most information in other supplemental Tables is derived from this file to facilitate further data mining. (XLSX 1589 kb)
DOI: 10.6084/m9.figshare.c.3644210_d3.v1
title: Additional file 13: Table S6. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: GCR1 and CPK11 sub-networks. The nearest neighbors of the known and novel GCR1 and CPK11 SVs were visualized in Cytoscape from the ArrayMining network. The following sub-networks are presented: (A) Known GCR1 SV. (B) Novel GCR1 SV. (C) Known CPK11 SV. (D) Novel CPK11 SV. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.c.3644210_d8.v1
title: Additional file 11: Table S5. of Transcriptome-wide functional characterization reveals novel relationships among differentially expressed transcripts in developing soybean embryos

description: Transcripts belonging to ABA-related genes and FUS3 regulon. Arabidopsis genes were obtained from [1, 51]. Mercator output for soybean transcripts was parsed to obtain potential Arabidopsis homologs. (A) These two datasets were cross-referenced to identify transcripts that were related to at least one of these regulators. (B) ABA-related transcripts; color-coding corresponds to standard assigned super-cluster colors. (XLSX 271 kb)
DOI: 10.6084/m9.figshare.c.3644234_d8.v1
title: Additional file 12: Table S7. of Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction

description: Names, primers and probes sequences or assay IDs, RefSeq numbers of genes selected for real-time RT-PCR analysis. (XLSX 13Â kb)
DOI: 10.6084/m9.figshare.c.3644234_d6.v1
title: Additional file 7: Table S5. of Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction

description: Canonical pathways identified by Ingenuity Pathway Analysis for genes showing differential expression in the hypothalamus of control (CON) vs. LUN mice. Significance for the enrichment of the genes within a particular Canonical pathway was determined by Fisher's exact test right-tailed using the whole database as a reference set (Th = −log(p-value) = 1.3). (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3644234_d7.v1
title: Additional file 3: Table S1. of Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction

description: Molecular changes in the hypothalami of 10- (D10) and 21-day (D21) old female (A) and male (B) F1 and F2 progeny assessed by real-time RT-PCR. (XLSX 15Â kb)
DOI: 10.6084/m9.figshare.c.3644234_d10.v1
title: Additional file 8: Table S6. of Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction

description: Upstream regulators suggested by Ingenuity Pathway Analysis for genes showing differential expression in hypothalamus of control (CON) vs. LUN mice. Ingenuity’s Upstream Regulator Analysis tool predicts upstream regulators from gene expression data based on the literature and compiled in the Ingenuity Knowledge Base. Activation z-score infer the activation state of predicted transcriptional regulator (Th = +/− 1). A Fisher’s exact test p-value is calculated to assess the significance of enrichment of the gene expression data for the genes downstream of an upstream regulator. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.c.3644234_d12.v1
title: Additional file 6: Table S4. of Lactation undernutrition leads to multigenerational molecular programming of hypothalamic gene networks controlling reproduction

description: Top 25 Combined (A) and Single (B) Biofunction Categories enriched with genes showing differential expression in the hypothalamus of control (CON) vs. LUN mice. (XLSX 64Â kb)
DOI: 10.15468/dl.dp7s3z
title: Occurrence Download

description: A dataset containing 4480 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Peucaea humeralis (Cabanis, 1851)"
 ]
}

 The dataset includes 4480 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037999-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644285_d3.v1
title: Additional file 3: of LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

description: It contains detailed results of our analyses in Table S1-S4. (XLS 265 kb)
DOI: 10.6084/m9.figshare.c.3644282_d3.v1
title: Additional file 1: of Visualizing sound: counting wolves by using a spectral view of the chorus howling

description: R Script for wolf choruses analysis with Seewave package in R environment. (R 1 kb)
DOI: 10.6084/m9.figshare.c.3644285_d1.v1
title: Additional file 2: of LowMACA: exploiting protein family analysis for the identification of rare driver mutations in cancer

description: It contains detailed results of our analyses in Table S5 and S6. (XLSX 232 kb)
DOI: 10.15468/dl.bwrvmq
title: Occurrence Download

description: A dataset containing 26895 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Peucaea ruficauda (Bonaparte, 1853)"
 ]
}

 The dataset includes 26895 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037998-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644291_d1.v1
title: Additional file 3 of OncoNEM: inferring tumor evolution from single-cell sequencing data

description: Knitr file for case studies. An rnw file for reproducing the results of the case studies. (RNW 27.7 kb)
DOI: 10.6084/m9.figshare.c.3644291_d3.v1
title: Additional file 2 of OncoNEM: inferring tumor evolution from single-cell sequencing data

description: Knitr file for simulation studies. An rnw file for reproducing the results of the simulation studies. (RNW 58.3 kb)
DOI: 10.15468/dl.w4np9j
title: Occurrence Download

description: A dataset containing 44708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GenusKey is Phasianus Linnaeus, 1758",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Machine Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 2000",
 "Country is United States of America",
 "StateProvince is Montana"
 ]
}

 The dataset includes 44708 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038000-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmpsxq
title: Occurrence Download

description: A dataset containing 772 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Urbanus esmeraldus (Butler, 1877)"
 ]
}

 The dataset includes 772 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038001-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2pnwn7
title: Occurrence Download

description: A dataset listing the 22 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Canada",
 "Geometry POLYGON((-66.4 43.4,-59.8 43.4,-59.8 47.1,-66.4 47.1,-66.4 43.4))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (EN, CR, EW, EX, VU)",
 "OccurrenceStatus is Present",
 "StateProvince is Nova Scotia",
 "TaxonKey is Aves"
 ]
}

 The dataset's 22 records were derived from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037992-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644324_d1.v1
title: Additional file 1: Table S1. of Fusion of the HMGA2 and C9orf92 genes in myolipoma with t(9;12)(p22;q14)

description: Cases of myolipomas which have been reported from 1991 until October 20, 2015. They were found searching pubmed ( http://www.ncbi.nlm.nih.gov/pubmed/ ) using the term â  myolipomaâ  . (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3644336_d1.v1
title: Additional file 1: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of GlyGCC. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 8 kb)
DOI: 10.6084/m9.figshare.c.3644336_d2.v1
title: Additional file 3: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of mt:SerGCT. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3644336_d3.v1
title: Additional file 2: of Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

description: Significantly enriched GO terms in the analysis of potential targets of GlyTCC. AmiGO [32] output (showing enrichment of specific GO terms) is provided for the three GO catgories in three respective worksheets. (XLSX 12 kb)
DOI: 10.15468/dl.pez386
title: Occurrence Download

description: A dataset containing 12339 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Alsophila setosa Kaulf., Austroblechnum penna-marina (Poir.) Gasper & V.A.O.Dittrich, Cyathea atrovirens (Langsd. & Fisch.) Domin, Lomaria spannagelii (Rosenst.) Gasper & V.A.O.Dittrich, Alsophila radens Mett., 1856, Cyathea acantha (Sehnem) Lehnert, Alsophila atrovirens Sander, 1893)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12339 records from 192 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038002-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd6ryb
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fauna de importancia para la conservación en los Distritos Regionales de Manejo Integrado (DRMI) de la región del Valle de Tenza, Boyacá"
 ]
}

 The dataset includes 532 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038003-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25919/v8tw-jv25
title: Parkes observations for project P885 semester 2024OCTS_06

description: We propose a reduced even more modest program to continue monitoring 4 of the 6 known radio magnetars, tracking their rotational, flux density, and polarisation properties. The rotational response of 1E 1547.0-5408 to its 2022 'hiccup' in radiative properties is still developing, requiring frequent observations every ~10 days. The cadence and request for Swift J1818.0-1607 is reduced, commensurate with its decreased activity/flux. Observations of XTE J1810-197, and PSR J1622-4950 which ceased emission in 2022, remain at reduced levels. The overall request is 13.5 hours.
DOI: 10.25345/c50g3h96m
title: MassIVE MSV000096678 - Fission yeast metabolome dynamics during phosphate starvation and replenishment
title: Inorganic phosphate is an essential nutrient acquired by cells from their environment and assimilated into myriad intracellular metabolites and macromolecules. Here we characterize the metabolic responses of fission yeast to a 24-h interval of phosphate starvation, during which cells enter a state of G0 quiescence. Time-resolved profiling revealed that many key phosphometabolites were progressively depleted, including: (i) NTPs, NDPs, and dNTPs; (ii) coenzyme A, NAD+, NADP+, NADH, and ADP-ribose; (iii) glycolysis pathway intermediates upstream of pyruvate; (iv) pentose phosphate pathway intermediates from 6-phosphogluconate to sedoheptulose-7-phosphate; (v) nucleotide sugars GDP-glucose/mannose, UDP-glucose/galactose, and UDP-GalNAc/GluNAc; and (vi) phospholipid precursors glycerol-3-phosphate, CDP-choline, and glycerophosphocholine. By contrast, early Krebs cycle intermediates accumulated during phosphate starvation. Other metabolic changes included: (i) interdiction of de novo pyrimidine synthesis; (ii) depletion of S-adenosylmethionine and S-adenosylhomocysteine; (iii) transient accumulation of polyamine biosynthetic intermediates putrescine, S-adenosylmethioninamine and 5-methylthioadenosine; (iv) accumulation of betaine (correlating with an increase in expression of atd1 mRNA encoding aldehyde dehydrogenase); and (v) depletion of aminoadipate pathway intermediates 2-oxoadipate, 2-aminoadipate and saccharopine. Replenishing phosphate after 24 h of starvation resulted in restoration of the metabolite levels to similar levels as non-starved controls (over 2 to 12 h) as cells exited quiescence and resumed growth.
DOI: 10.6084/m9.figshare.c.3644399_d1.v1
title: Additional file 2: of Training needs assessment of health care professionals in a developing country: the example of Saint Lucia

description: The dataset supporting the conclusions of this article. (XLS 441kb)
DOI: 10.5517/ccdc.csd.cc29w9zh
title: CCDC 2141417: Experimental Crystal Structure Determination

description: Related Article: Takeshi Nakagawa, Shaohua Fu, Kejun Bu, Dong Wang, Martina Vrankić, Philip Dalladay-Simpson, Xia Yin, Jianbo Zhang, Yonggang Wang, Xujie Lü, Jimin Zhao, Ho-kwang Mao, Yang Ding|2025|Carbon|233|119873|doi:10.1016/j.carbon.2024.119873
description: Related Article: Takeshi Nakagawa|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25919/mkkw-q269
title: Parkes observations for project P1165 semester 2024OCTS_05

description: We recently discovered two new pulsars J1849+1001 (35.1 ms) and J1839+0542 (57.9 ms) in a FAST pulsar survey at intermediate Galactic latitudes (PT2020_0141). Follow-up timing observations show that they are in circular orbits with massive companions. This suggests that PSR J1849+1001 and J1839+0542 can be classified as the intermediate-mass binary pulsar (IMBP). Their massive companions also make them promising systems to measure "Post-Keplerian" parameters through pulsar timing. These Parkes observations will be combined with regular timing observations with FAST to measure "Post-Keplerian" parameters and then measure both neutron star and companion masses.
DOI: 10.15468/dl.x8k9yw
title: Occurrence Download

description: A dataset containing 44708 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GenusKey is Phasianus Linnaeus, 1758",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Machine Observation, Observation, Occurrence evidence)",
 "Year is greater than or equal to 2000",
 "Country is United States of America",
 "StateProvince is Montana"
 ]
}

 The dataset includes 44708 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038004-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9e5huy
title: Occurrence Download

description: A dataset containing 6112 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Maritimes Summer Research Vessel Surveys",
 "Geometry POLYGON((-80.64723 37.74421,-44.35277 37.74421,-44.35277 52.25579,-80.64723 52.25579,-80.64723 37.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Decapoda",
 "Year 2017-2017"
 ]
}

 The dataset includes 6112 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038005-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3644486_d7.v1
title: Additional file 6: Table S6. of Molecular and phenotypic distinction of the very recently evolved insular subspecies Mus musculus helgolandicus ZIMMERMANN, 1953

description: Primers used for mtDNA genome amplification and sequencing. (XLS 37 kb)
DOI: 10.6084/m9.figshare.c.3644486_d6.v1
title: Additional file 5: Table S5. of Molecular and phenotypic distinction of the very recently evolved insular subspecies Mus musculus helgolandicus ZIMMERMANN, 1953

description: Details of the primers used for microsatellite loci typing. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3644486_d8.v1
title: Additional file 8: Table S8. of Molecular and phenotypic distinction of the very recently evolved insular subspecies Mus musculus helgolandicus ZIMMERMANN, 1953

description: List of mandible landmarks raw coordinates. (XLS 48 kb)
DOI: 10.6084/m9.figshare.c.3644498_d2.v1
title: Additional file 1: Table S1. of Burkitt lymphoma beyond MYC translocation: N-MYC and DNA methyltransferases dysregulation

description: List of inter and intra chromosomal gene fusion detected by fusion-detection pipeline. (XLS 89 kb)
DOI: 10.6084/m9.figshare.c.3644504_d5.v1
title: Additional file 6: Table S7. of Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer

description: Cellular response of inhibitors in different doses after 72Â hours of treatment. (XLSX 70 kb)
DOI: 10.25919/mnwe-s758
title: Long-term project observations for project P574 semester 2024OCTS_05

description: We request time to observe 270 pulsars on a regular basis in order to achieve three main science goals. The first is to understand pulsars: how do they spin down and what disrupts this process, how and why their profiles vary with time, whether they precess or have planetary mass companions, in short all the things that make pulsar timing noisier than the perfect clock. Secondly we want to understand the interstellar medium of our Galaxy through repeated monitoring of dispersion measure, rotation measure and flux density variations in conjunction with scintillation parameters. Finally, we provide these data as a community service both to the high-energy community where we have strong collaborative links (particularly to Fermi) and to the radio pulsar astronomers generally through the CSIRO archive. The project is on-going since 2007, we are (co-)authors on 106 papers arising from the P574 data. The data have contributed to the PhD theses of students from Bordeaux, Manchester, Oxford, Stanford, and Swinburne. We are seeking long-term project status with a view to continuing the project into the SKA era.
DOI: 10.6084/m9.figshare.c.3644504_d6.v1
title: Additional file 3: Table S5. of Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer

description: Table S5: Association of genomic aberrations and mitotic network gene expression in breast cancer. The p-values resulting from one-at-time ANOVA test for the association of each mitotic network genes with the 2995 copy number regions is indicated. See tsv file Table S4. (XLSX 2505 kb)
DOI: 10.6084/m9.figshare.c.3644504_d3.v1
title: Additional file 5: Table S6. of Genome co-amplification upregulates a mitotic gene network activity that predicts outcome and response to mitotic protein inhibitors in breast cancer

description: List of ChIP-sequencing datasets evaluating MYC, FOXM1, ZEB1, and SOX9 binding in diverse cell lines and the corresponding GEO Accession IDs. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3644525_d2.v1
title: MOESM3 of Detection and replication of QTL underlying resistance to gastrointestinal nematodes in adult sheep using the ovine 50K SNP array

description: Additional file 3: Table S2. Summary table of the correspondence between the QTL and SNP associations identified in the present study and other studies previously reported for parasite resistance traits in sheep. This table shows the correspondences found for all the QTL identified in this study (by LA, LDLA and GWAS) (indicated in green cells) with QTL previously reported based on microsatellite-based studies (compiled in the SheepQTLdb; indicated in light orange cells) and SNP chip-based studies (indicated in orange cells).
DOI: 10.6084/m9.figshare.c.3644525_d1.v1
title: MOESM4 of Detection and replication of QTL underlying resistance to gastrointestinal nematodes in adult sheep using the ovine 50K SNP array

description: Additional file 4: Table S3. Total list of annotated genes extracted from the Sheep Genome Assembly v3.1 using the BioMart web-tool for the significant QTL regions and SNP associations identified for the two parasite resistance traits analyzed in the present study. Among the total list of genes extracted, we identified 205 functional candidate genes involved in the immune response, based on our candidate gene survey, which are indicated in blue font colour. The colour of the rows refer to genes extracted based on the results of the Linkage Analysis (LA; green), Combined Linkage Disequilibrium and Linkage Analysis (LDLA; yellow) and Genome-wise Association Study (GWAS; blue).
DOI: 10.6084/m9.figshare.c.3644537_d1.v1
title: Additional file 1: of Germline mutations in BRCA1 and BRCA2 in epithelial ovarian cancer patients in Brazil

description: Supplementary Methods. Table S1. Clinical and pathological characteristics, BRCA sequencing and MLPA results. Table S2. BRCA1 gene variants. Table S3. BRCA2 gene variants. (ZIP 73.7 kb)
DOI: 10.6084/m9.figshare.c.3644546_d1.v1
title: Additional file 2 of Multi-objective optimization for RNA design with multiple target secondary structures

description: Supplementary Tables S10 â   S15. The detailed results of the single-target RNA design by MODENA. (XLSX 70.8 kb)
DOI: 10.6084/m9.figshare.c.3644546_d2.v1
title: Additional file 1 of Multi-objective optimization for RNA design with multiple target secondary structures

description: Supplementary Tables S1 â   S9. The detailed results of the RNA sequences designed by MODENA. The results for two-, three-, four-target designs with and without sequence constraints are included. (XLSX 71.7 kb)
DOI: 10.6084/m9.figshare.c.3644561_d1.v1
title: Additional file 3: Table S2. of Next generation sequencing of triple negative breast cancer to find predictors for chemotherapy response

description: Overview of sequencing statistics. (XLSX 48 kb)