cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5148606
title: Modified poly(L-lysine)-based structures as novel antimicrobials for diabetic foot infections, an in-vitro study.

description: <strong>Data used to generate Figures 2 to 7 </strong> Figure 2. Bactericidal activity of poly-L-lysine polymers against <em>S. aureus</em> and <em>P. aeruginosa</em> laboratory strains compared to antibiotics. Figure 3. Bactericidal activity of poly-L-lysine polymers against <em>S. aureus</em> and <em>P. aeruginosa</em> laboratory strains. Figure 4. Comparative bactericidal activity of poly-L-lysine G3(16) copolymers series with hydrophobic amino acid isoleucine, tyrosine and phenylalanine. Figure 5. Comparison of Bactericidal activity of poly-L-lysine polymers, PLL<sub>160 </sub>and G2(8)PLL<sub>20</sub> against <em>S. aureus</em> clinical isolates from wound infections. Figure 6. Bactericidal activity of linear PLL<sub>160 </sub>against <em>S. aureus</em> and <em>P. aeruginosa </em>isolates from suspected diabetic foot infections. Figure 7. Investigation of PLL polymer-induced loss of biofilm viability by resazurin staining of 24 h biofilms.
description: This work was supported by research grants from The Health Research Board (HRB) Ireland and the Medical Research Charities Group - Diabetes Ireland, Grant No. MRCG-2018-01
DOI: 10.5281/zenodo.5148605
title: Modified poly(L-lysine)-based structures as novel antimicrobials for diabetic foot infections, an in-vitro study.

description: <strong>Data used to generate Figures 2 to 7 </strong> Figure 2. Bactericidal activity of poly-L-lysine polymers against <em>S. aureus</em> and <em>P. aeruginosa</em> laboratory strains compared to antibiotics. Figure 3. Bactericidal activity of poly-L-lysine polymers against <em>S. aureus</em> and <em>P. aeruginosa</em> laboratory strains. Figure 4. Comparative bactericidal activity of poly-L-lysine G3(16) copolymers series with hydrophobic amino acid isoleucine, tyrosine and phenylalanine. Figure 5. Comparison of Bactericidal activity of poly-L-lysine polymers, PLL<sub>160 </sub>and G2(8)PLL<sub>20</sub> against <em>S. aureus</em> clinical isolates from wound infections. Figure 6. Bactericidal activity of linear PLL<sub>160 </sub>against <em>S. aureus</em> and <em>P. aeruginosa </em>isolates from suspected diabetic foot infections. Figure 7. Investigation of PLL polymer-induced loss of biofilm viability by resazurin staining of 24 h biofilms.
description: This work was supported by research grants from The Health Research Board (HRB) Ireland and the Medical Research Charities Group - Diabetes Ireland, Grant No. MRCG-2018-01
DOI: 10.6084/m9.figshare.15082410
title: Table S4

description: Table S4. Details of pangenome comparison generated from BLAST matches in GView Server
DOI: 10.6084/m9.figshare.15082410.v2
title: Table S4

description: Table S4. Details of pangenome comparison generated from BLAST matches in GView Server
DOI: 10.6084/m9.figshare.15082410.v1
title: Table S4

description: Table S4. Details of pangenome comparison generated from BLAST matches in GView Server
DOI: 10.6073/pasta/6915dda0dc36aaae0fa3d7727d339f7e
title: Inventory of Ants at the Black Rock Forest in Cornwall NY 2006-2015

description: Ants are key indicators of ecological change, but few studies have investigated how ant assemblages may respond to dramatic changes in vegetation structure in temperate forests. Pests and pathogens are causing widespread loss of dominant canopy tree species; ant species composition and abundance may be very sensitive to such losses. Prior to the experimental removal of red oak trees to simulate effects of sudden oak death and examine the long-term impact of oak loss at the Black Rock Forest (Cornwall, New York), we carried out a rapid assessment of the ant assemblage in the 10-hectare experimental area. We also determined the efficacy in a northern temperate forest of five different collecting methods - pitfall traps, litter samples, tuna-fish and cookie baits, and hand collection - routinely used to sample ants in tropical systems. A total of 33 species in 14 genera were collected and identified; the myrmecines Aphaenogaster rudis and Myrmica punctiventris, and the formicine Formica neogagates were the most common and abundant species encountered. Ninety-four percent (31 of 33) of the species were collected by litter sampling and structured hand sampling together, and we conclude that in combination, these two methods are sufficient to assess species richness and composition of ant assemblages in northern temperate forests. Using new, unbiased estimators, we project that 38-58 ant species are likely to occur at Black Rock Forest. Loss of oak from these forests may favor Camponotus species that nest in decomposing wood and open-habitat specialists in the genus Lasius.
DOI: 10.5281/zenodo.5113363
title: Data_Table S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original Table as PNG-format (10.3390_metabo11070442_TabS2.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format.
DOI: 10.5281/zenodo.5113362
title: Data_Table S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original Table as PNG-format (10.3390_metabo11070442_TabS2.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format.
DOI: 10.5281/zenodo.5113287
title: Data_Table S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_TabS1.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.pdf) PDF format.
DOI: 10.5281/zenodo.5113286
title: Data_Table S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_TabS1.PNG). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.pdf) PDF format.
DOI: 10.5281/zenodo.5113270
title: Data_Figure S5_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S5 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS5.PNG). Corresponding raw data and subsequent data analysis obtained from mRNA analysis provided as a file in PDF format (31003A_179400_10.3390_metabo11070442_FJ_AE-bileAcids_1-7.pdf). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_ FJ_AE-BileAcids_3_4_7-10.csv).
DOI: 10.5281/zenodo.5113269
title: Data_Figure S5_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S5 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS5.PNG). Corresponding raw data and subsequent data analysis obtained from mRNA analysis provided as a file in PDF format (31003A_179400_10.3390_metabo11070442_FJ_AE-bileAcids_1-7.pdf). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_FJ_AE-BileAcids_3_4_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_ FJ_AE-BileAcids_3_4_7-10.csv).
DOI: 10.5281/zenodo.5113259
title: Data_Figure S4_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S4 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS4.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113258
title: Data_Figure S4_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S4 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS4.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113250
title: Data_Figure S3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and a file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.pdf) PDF format.
DOI: 10.5281/zenodo.5113231
title: Data_Figure S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113249
title: Data_Figure S3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as a file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, a file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and a file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.pdf) PDF format.
DOI: 10.5281/zenodo.5113216
title: Data_Figure S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113230
title: Data_Figure S2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113188
title: Data_Table 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format, two files containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_2.csv), and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113215
title: Data_Figure S1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Figure S1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice. The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_FigS1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113187
title: Data_Table 3_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table 3 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab3.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as two files in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_M_1.txt) in txt format, two files containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_2.csv), and two files containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1-2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113164
title: Data_Table 2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table 2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113163
title: Data_Table 2_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table 2 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab2.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_2_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113014
title: Data_Table 1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice” The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.
DOI: 10.5281/zenodo.5113013
title: Data_Table 1_Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice

description: Data of Table1 from Impact on Bile Acid Concentrations by Alveolar Echinococcosis and Treatment with Albendazole in Mice” The Dataset (doi: 10.3390_metabo11070442) contains the original figures as PNG-format (10.3390_metabo11070442_Tab1.PNG). Corresponding raw data and subsequent data analysis obtained from LC-MS/MS analysis provided as one file in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_1.csv). All further experiment related information provided as one meta-data-file (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_M_1.txt) in txt format, one file containing further related information in CSV format (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_2.csv), and one file containing further related information on the analysis method (31003A_179400_10.3390_metabo11070442_CGC_AE-BileAcids_4_1_3.pdf) PDF format.