cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.pvmcvdnzk
title: Data from: The deep-soil sampling in Chile revealed a new elateroid beetle lineage, Badmaateridae fam. nov. (Coleoptera)

description: Deep-soil arthropods remain one of the least studied components of
 terrestrial biodiversity, and we present, as an exciting discovery, a new
 endogean beetle collected by floating deep soil samples in Chile. We
 analyzed a 4,203-ortholog dataset using both maximum likelihood and
 coalescent methods to infer its relationships. Regardless of the
 analytical setup, Badmaater was recovered as the sister to the clade
 consisting of Lycidae, Cantharidae, Elateridae, and the lampyroids. The
 distant position of Badmaater relative to the previously described
 elateroid families is confirmed by additional analyses of differently
 sampled, although less phylogenetically informative, 66-gene and
 mitogenome datasets. As a result, we describe Badmaater chilensis sp. and
 gen. nov. in Badmaateridae fam. nov. (Coleoptera: Elateroidea). Badmaater
 resembles other clicking elateroids, but has a three-segmented antennal
 club, slender palpi, and globular metacoxae that are situated close to
 each other. It is blind, wingless, and extremely small-bodied. We date the
 origin of Badmaateridae to the Triassic. The ancient origin of
 Badmaateridae suggests that this lineage has probably survived all
 disturbances shaping modern life, from the Triassic/Jurassic volcanic
 activity to the end-Cretaceous asteroid impact and subsequent Cenozoic and
 Quaternary climatic fluctuations. However, Badmaateridae is now one of the
 few beetle families with only a single species restricted to a narrow
 range. Deep-soil dwelling Badmaater survived in a relatively high-latitude
 area periodically affected by close glaciers and separated from the
 tropics by an arid zone. Badmaater, as a wingless deep-soil beetle
 occurring in a restricted area, has a limited dispersal propensity and
 consequently faces an inherent risk during turbulent environmental
 changes.
description: ## File Description Mitochondrial_datasets.7z Contains concatenated
 mitochondrial sequence data (AA and NT) and corresponding partition files.
 
 
 Nuclear_66_genes_datasets.7z Contains a curated subset of 66 nuclear
 genes (AA and NT) as utilized in Zhang et al. (2018), concatenated and
 with corresponding partition files.  
 
 Badmaateridae_Taxa_list.doc.docx List of the taxa used in the
 phylogenomic study. 
 
 Phylogenomic_datasets.7z Contains all data used in the phylogenomic part
 of the study. Phylogenomic_datasets folder structure after unzipping:
 Alignments - contains raw and after-aliscore unconcatenated data for AA
 and NT datasets. Datasets - contains concatenated AA and NT datasets with
 coresponding partition files including identified models. Dating -
 contains AA and NT datasets in phylip format for dating analyses and two
 tested topologies.
DOI: 10.15468/dl.4meqq7
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Intoshia major",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004454-260126135527185/datasets/export for details.
DOI: 10.34740/kaggle/dsv/14657338
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5061/dryad.kkwh70sh4
title: Data from: Gradual pollen release in a buzz pollinated plant: Investigating pollen presentation theory under bee visitation

description: The rate at which flowers dispense pollen across successive pollinator
 visits is a key functional trait influencing male reproductive success.
 Pollen presentation theory (PPT) predicts that when pollinators are
 abundant and actively groom their bodies to collect pollen, plants should
 evolve gradual pollen release. Despite its intuitive appeal and
 generality, PPT has rarely been tested empirically using real bee visits,
 especially in buzz pollinated plants where pollen dispensing is controlled
 mechanically. Buzz pollinated plants are ideal to study PPT because they
 are often nectarless and rely on pollen-grooming bees, which must apply
 vibrations to specialised tube-like or poricidal anthers to release
 pollen. The vibrations generated by some bees directly determine pollen
 release and thus yield a direct mapping between bee behaviour and floral
 function. Here, we provide the first quantitative assessment of pollen
 dispensing in a buzz pollinated plant, Solanum rostratum, using real
 bumblebee (Bombus terrestris) visits. We conducted 80 trials with
 individual bees and measured over 2,000 pollination buzzes to estimate the
 relationship between total buzzing time and pollen dosing. For each trial
 we measured the total time spent buzzing and the amount of pollen
 remaining in the flower after visitation. We also characterised the
 properties (frequency and duration) of individual buzzes. Individual
 pollination buzzes had a fundamental frequency of 340 ± 26 Hz (mean ± SD)
 and were relatively short in duration (0.748 ± 0.604 s). We found that S.
 rostratum shows a strong pattern of gradual pollen release with flowers
 dispensing on average 2-4% of the available pollen grains for each buzzing
 second. Our study links an ecologically relevant pollinator behaviour to a
 key floral functional trait that affects male fitness, offering empirical
 support for PPT in a buzz pollinated system.
description: # Data from: Gradual pollen release in a buzz pollinated plant:
 Investigating pollen presentation theory under bee visitation Dataset DOI:
 [10.5061/dryad.kkwh70sh4](10.5061/dryad.kkwh70sh4) ## Description of the
 data and file structure Pollen remaining and buzz duration data set. ###
 Files and variables #### File: FE_bee_release_mdat_20250701.csv
 **Description:**  ##### Variables * SampleID: Sample (flower) identity *
 buzz.number: Consecutive buzz number  * cep.fund.frequency.median: Median
 fundamental frequency of each buzz (Hz) * start: Start time of each buzz
 (seconds) * stop: End time of each buzz (seconds) * buzz.duration: Buzz
 duration in seconds * visit.length: Visit duration in seconds * BeeID: Bee
 identity * Accession: Plant accession number * flower.sample: Flower
 sample * mean.size: Mean pollen grain size in microns * pollen.number:
 Number of pollen grains * est.pollen: Estimated pollen number
DOI: 10.5061/dryad.63xsj3vf3
title: Data from: Projected 21st century shifts in fish growth potential in the California Current Ecosystem

description: This is an input dataset for a modeling framework that quantifies
 21st-century climate change impacts on early-marine fish growth potential
 along the central U.S. west coast using juvenile Chinook salmon as a
 case-study species. We use the Temperature and Krill values in this
 dataset in the upcoming publication "Projected 21st century shifts in
 fish growth potential in the California Current
 Ecosystem." Three Earth system models (IPSL-CM5A-MR,
 HadGEM2-ES, and GFDL-ESM2M) from the Coupled Model Intercomparison Project
 5 (CMIP5) were dynamically downscaled to produce regional climate and
 lower trophic-level (ending at the large zooplankter krill) projections at
 10 km resolution for the broader CCE region under the Representative
 Concentration Pathway 8.5 (RCP8.5) high emissions scenario. These 10km
 projections were then further nested into a gridded 3 km resolution
 ROMS-NEMUCSC domain for the central CCE to produce a more detailed
 representation of nearshore processes impacting juvenile salmon growth in
 coastal waters. The temperature variable is included as "temp,"
 and the krill variable is included as "pzooplankton." These are
 gridded files, so the other variables are those associated with the grid
 structure of the Temperature and Krill variables. 
description: # Data from: Projected 21st century shifts in fish growth potential in the
 California Current Ecosystem Dataset DOI:
 [10.5061/dryad.63xsj3vf3](10.5061/dryad.63xsj3vf3) ## Description of the
 data and file structure Three Earth system models (IPSL-CM5A-MR,
 HadGEM2-ES, and GFDL-ESM2M) from the Coupled Model Intercomparison Project
 5 (CMIP5) were dynamically downscaled to produce regional climate and
 lower trophic-level (ending at the large zooplankter krill) projections at
 10 km resolution for the broader CCE region under the Representative
 Concentration Pathway 8.5 (RCP8.5) high emissions scenario. These were
 then further nested into a gridded 3 km resolution ROMS-NEMUCSC domain for
 the central CCE to produce a more detailed representation of nearshore
 processes impacting juvenile salmon growth in coastal waters.  ### Files
 and variables #### File: tzp_gfdl_avgsrf_2000-2100.nc
 **Description:** Surface temperature, krill, and associated grid variables
 for 3km ROMS-GFDL.  #### File: tzp_had_avgsrf_2000-2100.nc
 **Description:** Surface temperature, krill, and associated grid variables
 for 3km ROMS-Hadley. #### File: tzp_ipsl_avgsrf_2000-2100.nc
 **Description:** Surface temperature, krill, and associated grid variables
 for 3km ROMS-IPSL.  ## Code/software These NC files can be viewed in any
 data visualization software of your choice (R, Python, Ncview, HDFView,
 etc.)
DOI: 10.15468/dl.qv6xss
title: Occurrence Download

description: A dataset containing 1347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lespedeza juncea",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1347 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004456-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnd8p3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((54.0145 -15.8532,54.1138 -16.1504,54.9312 -16.1504,55.0218 -15.961,54.8989 -15.5532,54.5521 -15.3811,54.2381 -15.4633,54.0145 -15.8532))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010432-250525065834625/datasets/export for details.
DOI: 10.15468/dl.f8daah
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Tropheus annectens)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024994-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.35097/rsaezhcaf97uuc1z
title: Data from "Design of lightweight high temperature structural materials based on refractory compositionally complex alloys, Part I: mechanical properties and phase stability"

description: T1 = 48.0Ti-25.0Mo-12.0Ta-10.0Cr-5.0Al (at.%)
T2 = 44.0Ti-20.0Mo-15.0Ta-15.0Cr-6.0Al (at.%)
T3 = 54.0Ti-10.0Mo-15.0Ta-15.0Cr-6.0Al (at.%)

Liquid = liquid phase
BCC_A2 = A2 solid phase
BCC_A2 = B2 solid Phase
Laves_C15 = C15 solid Laves phase

AC = as-cast condition
HT = homogenized and furnace-cooled condition
800C_1000h = 800 °C/1000 h heat-treated in glass ampoule and water-quenched
1000C_1000h = 1000 °C/1000 h heat-treated in glass ampoule and water-quenched

10 Kpmin = heating rate of 10 K/min
40 Kpmin = heating rate of 10 K/min

RT = room temperature
400C = 400 °C
600C = 600 °C
800C = 800 °C
900C = 900 °C
1000C = 1000 °C

Fig. 1: Thermodynamic calculations from FactSage, temperature T in °C vs. atomic phase fraction in 1
Fig. 2: Scanning electron micrographs (backscattered electron contrast imaging) in AC and heat-treated condition
Fig. 3: X-ray diffaction patterns with intensity in 1 vs. 2Theta in °
Fig. 4: Differential scanning calorimetry data with heat capacity Cp in J/(g*K) vs. temperature in °C and time in min (proprietary *.xlxs file)
Fig. 5: Compression test results in proprietary *.tra files that require TestExpert Software
Fig. 7: Scanning electron micrographs (backscattered electron contrast imaging) after compression tests
Fig. S1: Thermodynamic calculations from Pandat with PanRHEA, temperature T in °C vs. atomic phase fraction in 1
DOI: 10.17632/82dpxxvdgx
title: NCD Dataset

description: This dataset was collected from 8 hospitals in Bangladesh. The respondents were patients suffering from end-stage kidney disease who utilized dialysis treatment and cancer patients who utilized radiotherapy or chemotherapy treatments. Data was collected on sociodemographic variables, economic variables, as well as health-related indicators.
DOI: 10.17632/n7yp2p5nsr
title: How the EAT–Lancet Commission on food in the Anthropocene influenced discourse and research on food systems: Associated data from systematic review

description: This dataset provides Supplementary Data to Tulloch, Bogueva et al. (2023). How the EAT–Lancet Commission on food in the Anthropocene influenced discourse and research on food systems: a systematic review covering the first 2 years
post-publication. Lancet Global Health 11: S2214-109X(23)00212-7.
The dataset includes: (1) Metadata; (2) Extracted data for 192 articles from the systematic review of articles citing the EAT–Lancet Commission on food's publication in the Lancet (Willett W, et al. Food in the Anthropocene: the EAT–Lancet Commission on healthy diets from sustainable food systems. The Lancet 2019; 393(10170): 447-92); (3) Quality assessment of each negative critique identified in citing articles, to evaluate the level of evidence supporting each negative comment; (4) Quality assessment of each future policy and research recommendation from articles describing research agendas for food systems transformation.
DOI: 10.6084/m9.figshare.12280004.v1
title: Phyloseq objects

description: Phyloseq objects provided<br><br>“Reduced” refers to a data sets reduced (from the full routine biochemical profiling) to the variables that were valid to use and of interest<br><br>“dc” refers to manual contaminant check and removal in the oral and nasal samples (in addition to contaminant removal with “decontam”)<br><br>FECES: <br>ps_all_allo_5_core_reduced_vars: First object for feces samples, absolute count data<br> Used in the alpha diversity script as initial input<br>ps_all_allo_5_core1_reduced: Second object for feces samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_5_core1_reduced_vsd: Third object for feces samples, alpha diversity measures calculated and added to sample data, variance stabilized (vsd) count data<br> Used in the multivariate and ML scripts<br><br>ORAL:<br>ps_all_allo_oral_5_core_dc_reduced_vars: First object for oral samples, absolute count data<br> Used in the alpha diversity script as initial input<br><br>ps_all_allo_oral_5_core_dc1_reduced: Second object for oral samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_oral_5_core_dc1_reduced_vsd: First object for oral samples, absolute count data<br> Used in the multivariate and ML scripts<br><br><br>NASAL: <br><br>ps_all_allo_nasal_5_core_dc_reduced_vars: First object for nasal samples, absolute count data<br> Used in the alpha diversity script as initial input<br><br>ps_all_allo_nasal_5_core_dc1_reduced: Second object for nasal samples, absolute count data, alpha diversity measures calculated and added to sample data<br> Used as initial input for the multivariate script, in the ML script for the boxplots, and in LDA script<br>ps_all_allo_nasal_5_core_dc1_reduced_vsd: First object for nasal samples, absolute count data<br> Used in the multivariate and ML scripts
DOI: 10.6084/m9.figshare.24319039.v2
title: SanntiS

description: Software and Supplementary materials for development, benchmarking, and application of Sanntis, and MGnify-SanntiS.Sanntis: SMBGC Annotation using Neural Networks Trained on Interpro Signatures. Tool for identifying biosynthetic gene clusters (BGCs) in genomic & metagenomic data
DOI: 10.6084/m9.figshare.28428995.v1
title: Supplementary Material for: Effects of ophthalmic medications on conjunctival goblet cell density in New Zealand white rabbits.

description: Introduction: The conjunctiva contains numerous specialized cells called conjunctival goblet cells (CGCs). The topical application of specific eye drops to the ocular surface has conclusively been linked to cause a reduction in CGCs, a condition which has been associated with dry eye and other ocular surface disorders. The purpose of this study was to assess if the use of benzalkonium chloride as a preservative in common ophthalmic medications affects CGCs density in New Zealand White (NZW) rabbit conjunctivas. Methods: Data from seven preclinical studies conducted between March 2016 and April 2021 were analyzed, involving 146 male New Zealand White (NZW) rabbits aged 2 to 3 months. Prior to study participation, rabbits underwent a seven-day quarantine period in individual housing, during which their general health was monitored. Rabbits had ad libitum access to water and food, with intake data recorded. Comprehensive ophthalmological examinations were performed on all eyes prior to and throughout the studies. The density of corneal endothelial cells (CGCs) was specifically assessed using AB/PAS staining and quantified with a high-power (40X) field objective (Ocular 18x22), expressed as a percentage relative to epithelial cells. Results: No statistically significant differences were found between the with-BAK group and without-BAK group. The mean density in the 30-day group presented a statistically significant higher density than the &gt;30-day group (p=0.005). Analysis of the treatment revealed that antibiotic/steroid combination group had a higher average number of CGCs compared to both the antihistaminic group (p=0.004) and hypotensive agent group (p=0.047). Conclusion: Exposure to BAK-preserved medications for 30 days results in a higher density of CGCs compared to prolonged exposure to BAK-preserved medications exceeding 30 days. The pharmacological effects and associated cellular damage induced by BAK vary depending on the specific medication with which it is combined.
DOI: 10.6084/m9.figshare.29133083.v1
title: Tabla 1. Aspectos a considerar antes de implementar programas de capacitación docente en ámbitos rurales.xlsx

description: Methodology for evaluating the feasibility of developing teacher training programs in rural areas
DOI: 10.6084/m9.figshare.5122537.v1
title: Supplementary Material for: The Diagnostic Value of Cytokeratin 5/6, 14, 17, and 18 Expression in Human Non-Small Cell Lung Cancer

description: <i>Objectives:</i> The expression patterns of cytokeratin (CK) filaments in human epithelial neoplasms are complex and distinctive. The aims of this study were to analyze CK expression and to evaluate the diagnostic application of CKs in human non-small cell lung cancer (NSCLC). <i>Methods:</i> mRNA expression of CK5, CK6, CK14, CK15, CK17, and CK19 was analyzed by Northern blotting. Protein expression of CK5/6, CK7, CK14, CK17, and CK18 was evaluated by immunohistochemistry on tissue microarrays. <i>Results:</i> Northern blotting showed that CKs were highly expressed in human bronchial epithelial cells and/or small airway epithelial cells. In NSCLC cell lines, the expression pattern of CKs was heterogeneous. Regarding protein expression of CKs in 95 primary lung tumors, expression of CK5/6, CK14, and CK17 proteins was increased in squamous cell carcinomas compared to adenocarcinomas (ADC; p = 0.001, p = 0.030, and p = 0.001, respectively), and higher expression was significantly associated with lower grading (p = 0.006, p = 0.002, and p = 0.001, respectively), while increased expression of CK7 and CK18 was observed in ADC (p = 0.001, respectively). <i>Conclusions:</i> Our data suggest that CK5/6, CK7, CK14, CK17, and CK18 have diagnostic value in the subclassification of NSCLC.
DOI: 10.6084/m9.figshare.19062086.v1
title: P.tabuliformis_V1.0.CDS

description: The coding sequences of Pinus tabuliformis reference genome annotation.
DOI: 10.6084/m9.figshare.21915000.v1
title: Elias 2-24 reduced NACO data and ALMA+NACO models

description: Data and models associated with Pinte et al. 2023, MNRAS : <strong>Kinematic and thermal signatures of the directly imaged protoplanet candidate around Elias 2-24 </strong> <br> Data set includes : Reduced NACO data of Elias 2-24 (originally published in Jorquera et al. 2021, ApJ, 161, 146). Annular PCA post-processing of NACO data with 1 to 50 PCA compoments SPH models of a disk + 1Mjup to 10Mjup planet computed with PHANTOM (Price et al 2018) for 100 orbits. Setup file is included. Selection of radiative transfer models presented in Pinte et al 2023, using MCFOST (Pinte et al 2006, 2009). CO synthetic cubes and continuum images. Parameter file is included. The scripts to rerun the models and reproduce the figures are available at https://github.com/cpinte/elias2-24 <br> <br> <br>
DOI: 10.6084/m9.figshare.24899070.v1
title: Wine Consumer Behavior

description: This data is a list of articles included in the analysis.
DOI: 10.6084/m9.figshare.25444534.v1
title: neuronet_data

description: Pretrained NeuroNet model and precomputed variant effect scores.