cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bchswn
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Cuba",
 "TaxonKey is Colpothrinax Griseb. & H.Wendl."
 ]
}

 The dataset includes 62 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025423-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.izysgc
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086566-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.il2lua
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 32 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013481-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d9b4ty
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097303-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbkrrh
title: Occurrence Download

description: A dataset containing 2064550492 species occurrences available in GBIF matching the query:
{
 "Year" : [
 "1000-2022"
 ]
}

 The dataset includes 2064550492 records from 38511 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0226977-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cetvba
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stiphrornis pyrrholaemus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 14 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029441-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rr74b
title: Occurrence Download

description: A dataset containing 152 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stiphrornis xanthogaster)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 152 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029442-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dhrmed
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mackenziaena severa)",
 "Country is one of (Åland Islands, Albania, Andorra, Austria, Belarus, Belgium, Bosnia and Herzegovina, Bulgaria, Croatia, Czechia, Denmark, Estonia, Faroe Islands, Finland, France, Germany, Gibraltar, Greece, Guernsey, Holy See, Hungary, Iceland, Ireland, Isle of Man, Italy, Jersey, Latvia, Liechtenstein, Lithuania, Luxembourg, Malta, Moldova, Republic of, Monaco, Montenegro, Netherlands, North Macedonia, Norway, Poland, Portugal, Romania, Russian Federation, San Marino, Serbia, Slovakia, Slovenia, Spain, Svalbard and Jan Mayen, Sweden, Switzerland, Ukraine, United Kingdom of Great Britain and Northern Ireland)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029447-250802193616735/datasets/export for details.
DOI: 10.15468/dl.2udub4
title: Occurrence Download

description: A dataset containing 93 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caenoplana coerulea"
 ]
}

 The dataset includes 93 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029443-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4c4nrb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mackenziaena severa)",
 "Country is one of (American Samoa, Australia, Christmas Island, Cocos (Keeling) Islands, Cook Islands, Fiji, French Polynesia, Guam, Heard Island and McDonald Islands, Kiribati, Marshall Islands, Micronesia (Federated States of), Nauru, New Caledonia, New Zealand, Niue, Norfolk Island, Northern Mariana Islands, Palau, Papua New Guinea, Pitcairn, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, United States Minor Outlying Islands, Vanuatu, Wallis and Futuna)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029446-250802193616735/datasets/export for details.
DOI: 10.5281/zenodo.16780681
title: Intrinsic Optical Emission (IOE) Scientific Report – Final Version

description: Final scientific report on Intrinsic Optical Emission (IOE) phenomenon, based on field observations in June 2025, Southwest Papua, Indonesia.
description: This project contains the final scientific report proposing the newly coined term Intrinsic Optical Emission (IOE), based on direct field observations of rare natural light emission phenomena such as the Unrecorded Circular Light Phenomenon (UCLP). The report includes formal definitions, observation criteria, and case studies from research conducted in June 2025 in Southwest Papua, Indonesia. The document aims to provide a scientific foundation for this newly identified natural phenomenon and to facilitate further study and recognition within the scientific community.
description: Keywords: Intrinsic Optical Emission, IOE, Light Phenomenon, Optical Emission, UCLP, Circular Light, Natural Light Emission, Physics, Atmospheric Phenomena, Southwest Papua
DOI: 10.5281/zenodo.16780682
title: Intrinsic Optical Emission (IOE) Scientific Report – Final Version

description: Final scientific report on Intrinsic Optical Emission (IOE) phenomenon, based on field observations in June 2025, Southwest Papua, Indonesia.
description: This project contains the final scientific report proposing the newly coined term Intrinsic Optical Emission (IOE), based on direct field observations of rare natural light emission phenomena such as the Unrecorded Circular Light Phenomenon (UCLP). The report includes formal definitions, observation criteria, and case studies from research conducted in June 2025 in Southwest Papua, Indonesia. The document aims to provide a scientific foundation for this newly identified natural phenomenon and to facilitate further study and recognition within the scientific community.
description: Keywords: Intrinsic Optical Emission, IOE, Light Phenomenon, Optical Emission, UCLP, Circular Light, Natural Light Emission, Physics, Atmospheric Phenomena, Southwest Papua
DOI: 10.15468/dl.uhsz4v
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Mackenziaena severa)",
 "Country is one of (Algeria, Angola, Benin, Botswana, British Indian Ocean Territory, Burkina Faso, Burundi, Cabo Verde, Cameroon, Central African Republic, Chad, Comoros, Congo, Congo, Democratic Republic of the, Côte d’Ivoire, Djibouti, Egypt, Equatorial Guinea, Eritrea, Eswatini, Ethiopia, French Southern Territories, Gabon, Gambia, Ghana, Guinea, Guinea-Bissau, Kenya, Lesotho, Liberia, Libya, Madagascar, Malawi, Mali, Mauritania, Mauritius, Mayotte, Morocco, Mozambique, Namibia, Niger, Nigeria, Réunion, Rwanda, Saint Helena, Ascension and Tristan da Cunha, Sao Tome and Principe, Senegal, Seychelles, Sierra Leone, Somalia, South Africa, South Sudan, Sudan, Tanzania, United Republic of, Togo, Tunisia, Uganda, Western Sahara, Zambia, Zimbabwe)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029448-250802193616735/datasets/export for details.
DOI: 10.15468/dl.zvmm7v
title: Occurrence Download

description: A dataset containing 23495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stipiturus malachurus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 23495 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029449-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4jnbgp
title: Occurrence Download

description: A dataset containing 491 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lagocephalus suezensis"
 ]
}

 The dataset includes 491 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029451-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dpfd6e
title: Occurrence Download

description: A dataset containing 12267 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "TaxonKey is Pacifastacus leniusculus"
 ]
}

 The dataset includes 12267 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029450-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9dgzsy
title: Occurrence Download

description: A dataset containing 1622 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stipiturus ruficeps)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1622 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029455-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.18739/a2h12v928
title: Cryostratigraphy and ground-ice content of the upper permafrost in Alaska and Northern Canada, 2018-2023

description: This dataset contains information on cryostratigraphy and ground-ice content of the upper permafrost, which was based on the results of 22 field trips in 2018-2023. Field studies were performed in various regions of Alaska and Canadian Arctic including the following study areas: Utqiagvik (former Barrow), Teshekpuk Lake, Prudhoe Bay Oilfield, Toolik Lake, Jago River, Itkillik River, Anaktuvuk River, Fairbanks, Dalton Highway, Glennallen, Point Lay, Bylot Island (Canada), Inuvik-Tuktoyaktuk (Canada). Cryostratigraphy of the upper permafrost was studied mainly in coastal and riverbank exposures and frozen cores obtained from drilling with the SIPRE corer. Permafrost exposures and cores were described and photographed in the field, and obtained soil samples were delivered to the University of Alaska Fairbanks for additional descriptions and analyses. Ice contents of frozen soils (including gravimetric and volumetric moisture content, excess-ice content) were measured. The dataset includes cryostratigraphic descriptions, gravimetric (GMC) and volumetric (VMC) moisture content, excess-ice content (EIC), electrical conductivity (EC) and photographs of the permafrost exposures and frozen cores obtained from boreholes.
DOI: 10.15468/dl.kcx25u
title: Occurrence Download

description: A dataset containing 3317 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stipiturus mallee)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 3317 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029454-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5523/bris.24dxyz86y2krm2dj6vhh4mvkff
title: Data for SMS - kirigami inflatable actuators

description: Included here are data to support the paper:

Mohammad Naghavi Zadeh, Yu Cheng Huang, Richard Suphapol Diteesawat, Emanuele Pulvirenti, and Jonathan Rossiter, Soft inflatable kirigami actuators for wearable applications, 
Smart Materials and Structures (2025), DOI: 10.1088/1361-665X/adf586
DOI: 10.15468/dl.martph
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Psilorhamphus guttatus)",
 "Country is one of (Afghanistan, Armenia, Azerbaijan, Bahrain, Bangladesh, Bhutan, Brunei Darussalam, Cambodia, China, Cyprus, Georgia, Hong Kong, India, Indonesia, Iran (Islamic Republic of), Iraq, Israel, Japan, Jordan, Kazakhstan, Korea (Democratic People’s Republic of), Korea, Republic of, Kuwait, Kyrgyzstan, Lao People’s Democratic Republic, Lebanon, Macao, Malaysia, Maldives, Mongolia, Myanmar, Nepal, Oman, Pakistan, Palestine, State of, Philippines, Qatar, Saudi Arabia, Singapore, Sri Lanka, Syrian Arab Republic, Tajikistan, Thailand, Timor-Leste, Türkiye, Turkmenistan, United Arab Emirates, Uzbekistan, Viet Nam, Yemen)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029457-250802193616735/datasets/export for details.
DOI: 10.15468/dl.xb9v4t
title: Occurrence Download

description: A dataset containing 3753 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Psilorhamphus guttatus)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 3753 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029458-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6dswz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Psilorhamphus guttatus)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029456-250802193616735/datasets/export for details.
DOI: 10.15468/dl.fj754r
title: Occurrence Download

description: A dataset containing 2113 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stizorhina finschi)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 2113 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029460-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14630053
title: Single-cell resolution spatial transcriptomic signature of the retrosplenial cortex during memory consolidation

description: Spatial transcriptomics (sequencing) data analysis (10X Visium):

RSC_integrated_visium.rds : Includes retrosplenial cortex region integrated from seven homecage control (HC) and seven learning [Spatial Object Recognition (SOR)] samples

Spatial transcriptomics (imaging) data analysis (10X Xenium) from C57BL/6J mice:

RSC_integrated_xenium_new.rds: Includes retrosplenial cortex region integrated from four homecage control (HC) and four learning [Spatial Object Recognition (SOR)] samples

Spatial transcriptomics (imaging) data analysis (10X Xenium) from Tau-P301L mice:

Tau_RSC_integrated_xenium_new.rds: Includes retrosplenial cortex region integrated from three Tau-P301L learning samples and four control-learning samples.
DOI: 10.5281/zenodo.16697913
title: Single-cell resolution spatial transcriptomic signature of the retrosplenial cortex during memory consolidation

description: Spatial transcriptomics (sequencing) data analysis (10X Visium):

RSC_integrated_visium.rds : Includes retrosplenial cortex region integrated from seven homecage control (HC) and seven learning [Spatial Object Recognition (SOR)] samples

Spatial transcriptomics (imaging) data analysis (10X Xenium) from C57BL/6J mice:

RSC_integrated_xenium_new.rds: Includes retrosplenial cortex region integrated from four homecage control (HC) and four learning [Spatial Object Recognition (SOR)] samples

Spatial transcriptomics (imaging) data analysis (10X Xenium) from Tau-P301L mice:

Tau_RSC_integrated_xenium_new.rds: Includes retrosplenial cortex region integrated from three Tau-P301L learning samples and four control-learning samples.
DOI: 10.15468/dl.jh3j7y
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ACG7296"
 ]
}

 The dataset includes 55 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029461-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15790389
title: Nichesphere tutorial data

description: Nichesphere is an sc-verse compatible Python library which allows the user to find differential co-localization domains / niches based on cell type pair co-localization probabilities in different conditions. Cell type pair co-localization probabilities can be obtained in different ways, for example, through deconvolution of spatial transcriptomics / PIC-seq data (getting the probabilities of finding each cell type in each spot / multiplet) ; or counting cell boundaries overlaps for each cell type pair in single cell spatial data (MERFISH , CODEX …).

It also offers the possibility to look at biological process based differential communication among differential co-localization domains based on Ligand-Receptor pairs expression data, such as results from CrossTalkeR [ref.].

In our first example on Differential co-localization and process based differential communication analysis, we will use data from the Myocardial Infarction atlas from Kuppe, C. et. Al., 2022 to find differential co-localization domains and underlying differential cell - cell communication networks related to ischemia:

Dataset:

FileName: heart_MI_ST_SC_23samples.h5muModalities: ST+scRNAseqPhenotypes: 'border', 'fibrotic', 'ischemic', 'myogenic', 'remote'Filtering: minimum 1500 cells per sample

Annotation (for scRNAseq modality, mudata['sc']):

- mudata.obs column: "cell_type": 11 

- mudata.obs column: "cell_subtype2" 33

Phenotype (in scRNAseq modality, mudata['sc']):

- mudata.obs column: "sampleType"

Phenotype based ID (in both modalities, mudata['sc'] and mudata['visium']):



mudata.obs column: "patient_region_id"


Database:

Filename: nichesphereDB_pmid.csv

Nichesphere fibrosis related database contains ligands related to the biological processes below:








Process



Database



Number of ligands





Collagens



Matrisome (PMID:36399478)



45





ECM affiliated



Matrisome (PMID:36399478)



129





ECM glycoproteins



Matrisome (PMID:36399478)



168





ECM regulators



Matrisome (PMID:36399478)



204





Proteoglycans



Matrisome (PMID:36399478)



36





SecretedFactors



Matrisome (PMID:36399478)



265





Chemokine



Cytosig (PMID:34594031)



42





Cytokine



Cytosig (PMID:34594031)



86





GrowthFactor



Cytosig (PMID:34594031)



130





Inhibitory



Cytosig (PMID:34594031)



36






Folders "coloc", "comm" and "preprocessing" contain the necessary data to run each related tutorial, including jupyter notebooks. The rest of data files are explained along the tutorials.
DOI: 10.15468/dl.gn7p49
title: Occurrence Download

description: A dataset containing 4583 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stizorhina fraseri)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 4583 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029462-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.