cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25706307.v3
title: Supplementary Material for: Dermatology Life Quality Index (DLQI) in patients with atopic dermatitis: Are ‘not relevant’ responses relevant?

description: Introduction: According to the DLQI user manual, the patients´ answers ‘not relevant’ (NR) and ‘not at all’ (affected in this aspect of life by the skin problem) are treated equally and interpreted as no impairment in health related quality of life (HRQoL). The aim of this study was to gain more insights about ‘not relevant’ responders with atopic dermatitis (AD). 
Methods: 3,353 patients with AD, recruited from dermatological offices and a patient organisation, were surveyed in three cross-sectional studies. Disease severity (SCORAD) and subjective health status (EQ VAS) were compared for each DLQI item between patients who answered ‘not relevant’ and all others according to their response category. Different DLQI scoring versions were analysed.
Results: Those who stated ‘not relevant’ in terms of HRQoL limitations in the DLQI domains sports, work/study and sexual relationships were comparable in AD severity and health status to those who felt that their HRQoL was ‘a little affected’. Alternative DLQI scoring versions, in which ‘not relevant’ responses (NRRs) were interpreted as ‘a little affected’, correlated slightly higher with the SCORAD and EQ VAS than the original DLQI. 
Conclusion: Patients with AD who rate certain life domains as ‘not relevant’ in the DLQI are most similar in their disease burden to patients who feel a little affected in these areas of life. This suggests that some HRQoL limitations are underestimated by the traditional DLQI scoring. However, alternative scoring solutions have not shown substantially higher correlations with other disease burden criteria compared to the original. Therefore, the gain in validity by alternative scoring versions is small.
DOI: 10.6084/m9.figshare.28367564.v1
title: <b>Protein disulfide isomerase A4 as a potential biomarker and therapeutic target for coronavirus disease 2019: correlation with cytokine profiles and disease progression</b>

description: This study investigated the role of protein disulfide isomerase A4 (PDIA4) in the pathogenesis of coronavirus disease 2019 (COVID-19), focusing on its relationship with disease severity and potential as a therapeutic target or biomarker.
DOI: 10.6084/m9.figshare.29145056.v1
title: Original data

description: <b>High-throughput design of Fe-based amorphous alloys with excellent corrosion resistance</b>
DOI: 10.17632/t2yvtwnjx7
title: The tumor microenvironment architecture correlates with risk of recurrence in head and neck squamous cell carcinoma

description: We performed highly multiplexed microscopy using CODEX on 9 surgical specimens of patients with stage II-IV HPV negative squamous cell carcinoma explants of the oral cavity and oropharynx (HNSCC).  We selected and validated a panel of 30 antibodies that allows the discrimination of the main leukocyte subsets infiltrating the tumor as well as auxiliary markers for tumor, vascular, and stromal. Fluorochrome conjugated reported oligonucleotides were hybridized on 12-cycle experiments with the Akoya PhenoCycler connected to a BZ-X700 microscope. Images were automatically acquired on 121 contiguous 20X fields (5.6mm x 4.2mm, resolution 377.47 nm/pixel) with 7 z-slices (1.5 µm/z pitch) and 30% tile overlap, with 10ms, 250 ms, 350 ms, and 350 ms acquisition time for DAPI, AF488, Cy3, and cy5 filters, respectively. The resulting 40,656 images per specimen were processed with the Akoya’s PhenoCycler™ Instrument Manager (version 1.3) and CODEX Processor (version 1.7.2) for segmentation using the default parameters. Cell phenotyping was performed in R using unsupervised clustering, followed by manual curation of clusters based on marker expression, morphology, and tissue localization. Cellular neighborhoods were identified implementing in R the neighborhood analysis from the NOLAN lab (https://github.com/nolanlab/NeighborhoodCoordination). We identified 14 conserved, distinct cellular neighborhoods that constitute a collection of components characteristic of the HNSCC infiltrating tumor microenvironment. This study highlights the power of CODEX immune fluorescence in immuno-monitoring, reveals the extraordinary complexity of the tumor microenvironment of HNSCC patients, and supports the notion that TLS1 and long-lived plasma cells are important determinants of antitumor immunity and tumor progression. HNSCC_results.csv table contains coordinates of all segmented objected, expression profiles, cell types and cellular neighborhood annotations.
DOI: 10.6084/m9.figshare.24990999.v1
title: Mass Spec cytometry data from Evans et al Multi-omics and imaging mass cytometry characterization of human kidneys to identify pathways and phenotypes associated with impaired renal function

description: Mass Spec cytometry data from Evans et al Multi-omics and imaging mass cytometry characterization of human kidneys to identify pathways and phenotypes associated with impaired renal function
DOI: 10.6084/m9.figshare.25604676.v1
title: Digital Supplement for Enhancing Collective Entanglement Witnesses through Correlation with State Purity

description: <pre>This paper analyzes the adverse impact of white noise on collective quantum measurements and argues that such noise poses a significant obstacle for the otherwise straightforward deployment of collective measurements in quantum communications. The paper then suggests addressing this issue by correlating outcomes of these measurements with quantum state purity. To test the concept, a support vector machine is employed to boost the performance of several collective entanglement witnesses by incorporating state purity into the classification task of distinguishing entangled states from separable ones. Furthermore, the application of machine learning allows to optimize {specificity} of entanglement detection given a target value of sensitivity. A response operating characteristic curve is reconstructed based on this optimization and the area under curve calculated to assess the efficacy of the proposed model. {Finally, we test the presented approach on an experimental dataset of Werner states.</pre>
DOI: 10.6084/m9.figshare.3082042.v1
title: advogato.tar.bz2

description: This is the trust network of Advogato. Advogato is an online community platform for developers of free software launched in 1999. Nodes are users of Advogato and the directed edges represent trust relationships. A trust link is called a "certification" on Advogato, and three different levels of certifications are possible on Advogato, corresponding to three different edge weights: certifications as apprentice (0.6), journeyer (0.8) and master (1.0). A user without any trust certificate is called an observer. It is possible to trust oneself on Advogato, and therefore the network contains loops. For more information, please visit: http://konect.uni-koblenz.de/networks/advogato.
DOI: 10.6084/m9.figshare.818974.v1
title: 3-back scores of participants before, during and after tDCS stimulation to their left dorsolateral prefronatal cortex

description: Files are named by date, subject code, day and task condition. There are four different conditions: Exposure, Baseline, DCS and Test. Exposure was a brief training on the n-back task. Baseline was a 5 minute period of the 3-back. Exposure and Baseline occurred only on day 1. DCS stands for direct current stimulation and indicates performance of the 3-back (10 minutes) that occurred while participants were stimulated. The test condition (10 minutes of 3-back) occurred post-stimulation. Both DCS and the Test conditions occurred on days 1 and 2. For example: 01-Jan-2012_AA01_1_DCS - indicates the performance during stimulation on day 1 01-Jan-2012_AA01_2_Test - indicates the performance during post-stimulation test phase on day 2 Variables in the files are presented in the following order: shudaprsd = indicates instances where the letter on screen was the same as the letter 3-back (1) or not (0) key_press = the key pressed (6 = F, letter on screen is not the same as 3-back; 8 = h, letter on screen is the same as letter 3-back) instructions = time relative to the start of the file when the instructions appeared on screen fixation = time relative to the start of the file when the first fixation cross appeared on screen letter_onscreen = time relative to the start of the file when the letter appeared on screen stimulus_interval = time relative to the start of the file when the fixation cross disappeared off screen RT = reaction time in seconds from the time stimulus onset to the button press Hits = the amount of correct hits (3-back) CRs = the number of correct rejections FAs = false alarms, pressing the hit button at the wrong occasion Misses = incorrect rejection of hit trial (opposite to false alarm) or = omitted rejection response oh = omitted hit response HR = hit rate calculated as the number of hits per chances FAR = false alarm rate calculated as the number of false alarms per opportunity Z_HR = Z normalised hit rate, where Z is the inverse of the cumulative Gaussian distribution Z_FAR = Z normalised false alarm rate, where Z is the inverse of the cumulative Gaussian distribution d = d prime calculated as Z_HR - Z_FAR
DOI: 10.17632/6kvtfb5kts
title: PoreBoostGAN

description: The MRCCM dataset, accessible via the Digital Rocks Portal(https://www.digitalrocksportal.org/projects/362), comprises multi-resolution digital rock scans of two distinct carbonate samples, each imaged at two different resolutions. This open-access dataset is particularly valuable for advancing research in digital rock analysis, including the study of partial volume effects, segmentation techniques, and the benchmarking of deep learning models for super-resolution and segmentation tasks. We specifically selected two digital rocks from the MRCCM dataset for validation purposes.

To ensure compatibility with the Biogenic dataset—which features scans of more complex and long-term geological structures—the MRCCM dataset has been converted to .tif format. The Biogenic dataset includes three in-situ resolution scans, enabling direct validation of ultra-high-resolution models against ground truth data. In contrast, the MRCCM dataset, with only two available resolutions, has undergone a downsampling strategy to generate the necessary data for comprehensive training and evaluation.

The SR folder within the dataset is particularly noteworthy. It contains data specifically prepared for testing the extrapolation capabilities of super-resolution models, making it an essential resource for researchers focused on developing and refining these models. The root directory of the dataset includes 3D reconstruction training sets for digital rock cores, while the SR folder provides datasets tailored for evaluating the performance of super-resolution techniques in extrapolating higher-resolution details.

This structure ensures that researchers have access to both the foundational data necessary for training and specialized datasets designed for rigorous testing of super-resolution methods.
DOI: 10.17632/ftynwb5d47
title: Effect of resin type, fiber content and curing process of date palm fiber composite

description: The effect of resin type, fiber content and curing process of date palm fiber composite has been studied using flexural properties. two phenolic resin types (novolac and resol), four fiber content (30%, 40%, 50%, and 60%) and curing procedure (thermally curing, acid curing, acid curing with post curing at 90C and acid curing with post curing at 165 C) was studied.
DOI: 10.17632/rb34cg9xk7
title: LINF_Genome sequence

description: Nucleotide sequence of the 36 chromosomes comprising the Leishmania infantum genome (JPCM5 strain)
DOI: 10.21942/uva.19310597.v1
title: Carbonate chemistry data

description: seawater carbonate chemistry data for each tank<br>data for Table S3 in the paper
DOI: 10.6084/m9.figshare.13208000.v2
title: Dataset

description: Dataset for study aimed to examine the associations between baseline adiposity and 7-year changes in physical activity and sedentary behavior among elderly women and to explore the longitudinal associations between change in adiposity and change in movement-behavior composition. <br>
DOI: 10.6084/m9.figshare.964799.v1
title: Effects of Lactobacillus paracasei CNCM I-4034, Bifidobacterium breve CNCM I-4035 and Lactobacillus rhamnosus CNCM I-4036 on Hepatic Steatosis in Zucker Rats

description: This file contains the principal findings in the study: "Effects of Lactobacillus paracasei CNCM I-4034, Bifidobacterium breve CNCM I-4035 and Lactobacillus rhamnosus CNCM I-4036 on Hepatic Steatosis in Zucker Rats"
DOI: 10.6084/m9.figshare.12765596.v1
title: Scholarly Neural Network Diagram Interviews

description: These datasets contain:(i) interview transcripts(ii) interviewer script(iii) example diagrams to elicit opinions(iv) task list for card sorting.<br>Semi-structured interviews are a well-established technique for collecting data. Prior to formal commencement of the study one pilot user was taken through using a preliminary interview script, which led to the refinement of the interview materials. The interview questions are available alongside the transcript data, the overarching questions being:- Can you describe how you use diagrams when communicating your research?- How do you use diagrams when consuming research?<br>Following the graphic elicitation and card sorting exercises, additional follow-up questions were asked, about the role of diagrams more generally and exploring topics that came up during the interview. The entire interview session, including the two exercises, was audio recorded and documented in the transcript. Six participants were interviewed face-to-face, and six were interviewed over Skype video software. Interview resources were presented as printouts or as PDFs. The interviews took an average of just over 1 hour, resulting in 12 hours, 4 minutes, 54 seconds of audio recording. The recordings were transcribed with personally identifiable information and unnecessary non-words redacted, resulting in over 58,000 words of transcription. The interviews were conducted in English, and the majority of participants were non-native English speakers. The transcripts capture what was said, with the interviewer adding clarifications of understood meaning in square brackets where required.
DOI: 10.6084/m9.figshare.27641982.v1
title: <b>subsoil organic carbon response to warming and cooling</b>

description: data and code related to variable responses of carbon stabilization to long-term climate change
DOI: 10.6084/m9.figshare.29149736.v2
title: Spatial and Temporal Evolution of Tropical Rainforest Biomass in Hainan Based on Multi-modal Temporal Remote Sensing Data Fusion

description: This study integrated ground-based plot surveys and multi-source remote sensing data to develop a canopy height and aboveground biomass estimation model for Hainan Tropical Rainforest National Park from 2003 to 2023. To support scientific transparency and model reproducibility, a portion of the research data has been organized and made publicly available. The dataset includes the following three categories:<b>1</b><b>、</b><b>Survey data of tropical rainforest plots</b><b>：</b><b>Biomass data of 140 sample plots:</b> Includes 140 sample plots (10 m × 10 m), with information on plot ID, geographic coordinates, forest type, and biomass of tree and understory layers.<b>Biomass data of 64 historical plots:</b> Contains biomass data from 64 historical plots (25.8 m × 25.8 m), including plot ID, location, and aboveground biomass.<b>Data of individual trees from 140 sample plots: </b>Covers detailed measurements of 4,732 individual trees, including species name, diameter at breast height (DBH), tree height, crown volume, and estimated biomass per tree.<b>2</b><b>、</b><b>Forest type distribution data</b><b>：</b>Based on the natural forest classification dataset, GLC_FCS30D land cover data, and ALOS DEM elevation data, this shapefile represents forest type distribution in Hainan Tropical Rainforest National Park from 2003 to 2023 at a 30-meter spatial resolution (WGS 1984 coordinate system).<b>3</b><b>、</b><b>Remote sensing estimation results of biomass and canopy height of tropical rainforests in Hainan from 2003 to 2023</b><b>：</b>Includes annual maps of forest aboveground biomass density and canopy height distribution in Hainan Tropical Rainforest National Park from 2003 to 2023. All data are provided in GeoTIFF format with a spatial resolution of 30 meters, suitable for GIS-based analysis and visualization.
DOI: 10.17632/mjb7ccbxf9
title: Replication folder: Accounting for the New Gains from Trade Liberalization

description: Replication folder - Accounting for the New Gains from Trade Liberalization
DOI: 10.17632/mt72bmxz73
title: A comprehensive dataset of rice field weed detection from Bangladesh

description: Type of data: RGB digital images
Data format: .jpg
Number of images: 3632
Number of classes: 11
How data were acquired : Through a smartphone camera
Data source location: Rice fields of Narsingdi and Munshiganj, Bangladesh
Where applicable: Deep learning, image processing, agricultural studies
DOI: 10.6084/m9.figshare.11594595.v2
title: Barton_et_al_2020_EcoLetters_Data_code.zip

description: Data and code for:Barton, Samuel et al. (2020), <i>Evolutionary temperature compensation of carbon fixation in marine phytoplankton</i><br>AbstractThe efficiency of carbon sequestration by the biological pump could decline in the coming decades because respiration tends to increase more with temperature than photosynthesis. Despite these differences in the short-term temperature sensitivities of photosynthesis and respiration, it is unknown whether the long-term impacts of global warming on metabolic rates of phytoplankton can be modulated by evolutionary adaptation. We found that respiration was consistently more temperature dependent than photosynthesis across 18 diverse marine phytoplankton, resulting in universal declines in the rate of carbon fixation with short-term increases in temperature. Long-term experimental evolution under high temperature reversed the short-term stimulation of metabolic rates, resulting in increased rates of carbon fixation. Our findings suggest that thermal adaptation may therefore have an ameliorating impact on the efficiency of phytoplankton as primary mediators of the biological carbon pump. Usage NotesEach folder corresponds to analyses and figures presented in the manuscript.The folders contain all the relevant input and output data for the R code found within each folder.
DOI: 10.6084/m9.figshare.6989498.v1
title: SVM random search items

description: Outcome of the random grid searches for the SVM model.
DOI: 10.6084/m9.figshare.11854857.v1
title: Principal Component Analysis of Acidogenic Fermentation

description: Matlab script and raw data file for performing a principal component analysis (PCA) on acidogenic fermentation data reported in literature.<br>This will perform a PCA on the fermentation data taken from the following paper: Ramos-Suarez, M., Zhang, Y. & Outram, V. Current perspectives on acidogenic fermentation to produce volatile fatty acids from waste. <i>Rev Environ Sci Biotechnol</i> (2021). https://doi.org/10.1007/s11157-021-09566-0<br>Ensure script and data file are saved within the same folder, then run the script.<br>
DOI: 10.6084/m9.figshare.27101302.v3
title: Confluence Data.xlsx

description: Data support the study "Confluence Effects of Dongting Lake in the Middle Yangtze River: Discontinuous Fluvial Processes and Their Driving Mechanisms"
DOI: 10.17632/m2tp9gv9tk
title: Seasonal weight data for female laboratory ferrets
DOI: 10.17632/phgywg4ghd
title: The Path to Becoming a Fortune 500 CIO

description: This study examines LinkedIn data from 400 Fortune 500 CIOs and 2,842 other C-level executives, supplemented by in-depth interviews with six current or former Fortune 500 CIOs. The dataset includes information on educational background, career progression timelines, and prior work experiences. The dataset provides valuable insights for aspiring CIOs, HR professionals, and researchers studying executive career paths in the technology sector.
DOI: 10.17632/w7nw4km7xd
title: Spatial Multimodal Analysis of Transcriptomes and Metabolomes in Tissues

description: We present a spatial omics approach that combines histology, mass spectrometry imaging, and spatial transcriptomics to facilitate precise measurements of mRNA transcripts and low-molecular weight metabolites across tissue regions. The workflow is compatible with commercially available Visium glass slides. We demonstrate the potential of our method using murine and human brain samples in the context of dopamine and Parkinson’s disease.
DOI: 10.6084/m9.figshare.1037595.v1
title: Construction of Three Novel Coordination Complexes by 3-Nitrophthalic Acid Plus N-Donor Ligands: Synthesis, Structure, and Properties

description: In order to explore new coordination frameworks with novel designed 3-nitrophthalic acid and N–donor ancillary ligands, three novel coordination complexes, namely, [Co<sub>2</sub>(3-NPA)<sub>2</sub>(2,2′-bipy)<sub>2</sub>(H<sub>2</sub>O)<sub>2</sub>]•2H<sub>2</sub>O (<b>1</b>), [Mn<sub>2</sub>(3-NPA)<sub>2</sub>(4,4′-bipy)<sub>3</sub>(H<sub>2</sub>O)<sub>6</sub>]•(4,4′-bipy) (<b>2</b>), and [Pb<sub>2</sub>O(3-NPA)]<sub>n</sub> (<b>3</b>) (where 3-NPAH<sub>2</sub> = 3-nitrophthalic acid, 2,2′-bipy = 2,2′-bipyridine, 4,4′-bipy = 4,4′-bipyridine), have been hydrothermally synthesized. X-ray structure analysis reveals that <b>1</b> and <b>2</b> are dinuclear structures, while <b>3</b> is a two-dimensional (2D) network polymer. And the hydrogen bonds and π–π stacking also play important roles in affecting the final structure where complexes <b>1</b>-<b>2</b> have 3D and 2D supramolecular architectures, respectively. These complexes have been characterized by powder X-ray diffractions (PXRD) and thermal gravimetric analyses (TGA). In addition, their photochemical properties have also been investigated.
DOI: 10.6084/m9.figshare.22433980.v1
title: cVEP dataset

description: code modulated visual evoked potentials based brain compyter interface
DOI: 10.6084/m9.figshare.28636004.v1
title: Refractive error in strabismic children: Cycloplegic autorefractometry vs. Mohindra retinoscopy.

description: The data represent the values of refractive error, including the spherical component, cylinder power, and axis, for the right and left eye, obtained from Mohindra retinoscopy and cycloplegic autorefractometry in children aged 3 to 10 years.