cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ww2d4-d6k64
title: Hyphomonas chq session18 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-24</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, chloroquine 1.0mg/ml, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-24-25/rawdata/</p>09jun24a_bx217c_056.mrc,  Tilt Series (Pixel Size 0.512 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-24-25/rawdata/09jun24a_bx217c_056.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun24a_bx217c_056_full.rec,  Reconstruction (Pixel Size 1.024 nm), 419.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4agm6-6my04
title: Ote 090409 MP22

description: Opitutus terrae, 09sep10b_090409MP22_038,
description: <strong>Tilt Series Date:</strong> 2009-09-10</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Opitutus terrae</p>
<strong>Strain:</strong> DSM 11246</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-09-10-69/rawdata/</p>09sep10b_090409MP22_038.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09sep10b_090409MP22_038_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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DOI: 10.15468/dl.3kzsz9
title: Occurrence Download

description: A dataset containing 224 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Argentina",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Panthera onca"
 ]
}

 The dataset includes 224 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002282-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ng9zdp
title: Occurrence Download

description: A dataset containing 10943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is IMOS - Animal Tracking Facility - Acoustic Tracking - Quality Controlled Detections (2007 -2021)",
 "TaxonKey is Nautilidae"
 ]
}

 The dataset includes 10943 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002281-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5z1pk-9ew85
title: CB15N single colony exponential

description: Raw data files of CB15N single colony exponential
description: <strong>Tilt Series Date:</strong> 2010-01-09</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Single colony. Exponential phase in PYE.</p>
<strong>Sample Preparation:</strong> Quantifoil R2/2 or R2/1, 10 nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-01-09-28/rawdata/</p>10jan09a_CB15N_028.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10jan09a_CB15N_028_part.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
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DOI: 10.22002/tsfca-dsg64
title: A.longum on Propanediol

description: Raw data files of A.longum on Propanediol
description: <strong>Tilt Series Date:</strong> 2009-03-12</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (60.0°, -60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase on only Propanediol (induces pdu formation) </p>
<strong>Sample Preparation:</strong>  quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-12-6/rawdata/</p>09mar11c_pos6Alongum_006.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell6_full.rec,  Reconstruction (Pixel Size 1.922 nm), 293.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-03-12-6/3dimage_6441/cell6_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/wtpd6-4zj36
title: sporulating Bsubtilis MJ007

description: sporulating Bsubtilis MJ007, skinny Bacillus
description: <strong>Tilt Series Date:</strong> 2011-03-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> MJ007, ponA null</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> strain from Kit Pogliano at UCSD</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-03-29-9/3dimage_25412/</p>10_full.rec,  Reconstruction (Pixel Size 1.9 nm), 660.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-03-29-9/3dimage_25412/10_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11mar29a_gr4_010.mrc,  Tilt Series (Pixel Size 0.95 nm), 906.0 MB  
        
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DOI: 10.22002/xph67-xhe55
title: MamJ deletion (and might contain

description: Raw data files of MamJ deletion (and might contain
description: <strong>Tilt Series Date:</strong> 2010-02-18</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR and Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture were from Arash Komeili. Upon receiving, cells were frozen in 2 hours. Meanwhile they were kept in 30C. Data collected and processed by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Stationary phase. </p>
<strong>Sample Preparation:</strong> R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2010-02-18-26/rawdata/</p>10feb18a_dJnofe2b_026.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10feb18a_dJnofe2b_026_full.rec,  Reconstruction (Pixel Size 2.384 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ybyn3-h5997
title: PVA 032409 609

description: Prosthecobacter vanneervenii, 09apr03a_Pvashake609_2_037, putative btub structure (2 tubes),
description: <strong>Tilt Series Date:</strong> 2009-04-03</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-04-03-22/rawdata/</p>09apr03a_Pvashake609_2_037.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09apr03a_Pvashake609_2_037_part.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1zsbq-qz575
title: CFP-RodZ oe

description: Raw data files of CFP-RodZ oe
description: <strong>Tilt Series Date:</strong> 2009-03-25</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, IMOD</p>
<strong>Collaborators and Roles:</strong> The plasmid was provided by Anisah Alyahya (Jacobs-Wagner lab). Transfection, data collected and processed by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> A plasmid pJS14pxylcfp-rodZ was electroporated into CB15N. The cells were then grown in PYE plates containing antibiotics. Single clony was picked and then induded by xylose for 24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-03-25-23/rawdata/</p>09mar25a_bx771RGoe_023.mrc,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09mar25a_bx771RGoe_023_part.rec,  Reconstruction (Pixel Size 1.264 nm), 629.1 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jp2gh-1sx96
title: Bacillus subtilis (JFG349)

description: Bacillus subtilis MJ007-JFG349(SpoIIIE-7311-GFP)
description: <strong>Tilt Series Date:</strong> 2009-07-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Jennifer Gutierrez</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Induced sporulation t=2.5</p>
<strong>Sample Preparation:</strong> R2/2 quantifoil grid, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-07-29-23/rawdata/</p>09jul28b_349_030.mrc,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        cell30_full.rec,  Reconstruction (Pixel Size 1.922 nm), 528.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tbtas-mgg55
title: Acetonema longum

description: A. longum grown on Rhamnose Day2
description: <strong>Tilt Series Date:</strong> 2011-05-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson grew the cells</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown on Rhamnose</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-05-29-17/3dimage_25238/</p>target2_full.rec,  Reconstruction (Pixel Size 1.9 nm), 429.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        Target2.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/w2w5a-zkv44
title: B. subtilis AD3268

description: Raw data files of B. subtilis AD3268
description: <strong>Tilt Series Date:</strong> 2011-12-09</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3268, ponA null, Alp7A</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2011-12-09-26/rawdata/</p>32680026.mrc,  Tilt Series (Pixel Size 1.9 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        32680026_part.rec,  Reconstruction (Pixel Size 3.8 nm), 929.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.jd7nbs
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Crepis flexuosa"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002284-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7srau3
title: Occurrence Download

description: A dataset containing 10943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is IMOS - Animal Tracking Facility - Acoustic Tracking - Quality Controlled Detections (2007 -2021)",
 "TaxonKey is Nautilidae"
 ]
}

 The dataset includes 10943 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002283-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/mpcjh-zf835
title: Eco 112409 MP23

description: Escherichia coli, 09nov25b_MP23_112409_001, btub filaments,
description: <strong>Tilt Series Date:</strong> 2009-11-25</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> 7.1.2 Martin</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-11-25-1/rawdata/</p>09nov25b_MP23_112409_001.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        09nov25b_MP23_112409_001_part.rec,  Reconstruction (Pixel Size 1.9 nm), 1.3 GB  
        
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