cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17081556
title: Synthetic Incident Response Log Creation with Large Language Models

description: This dataset presents a gold standard collection of synthetic cybersecurity incident response activities and communication logs datasets, created to address the critical shortage of open source publicly available incident response datasets, including synthetic data detailing incident responder activity. The data was generated and refined through a large language model ChatGPT augmentation driven process, guided by a novel error taxonomy and evaluation framework developed in this research.

A file containing all prompts to create each dataset has also been contributed.

The dataset includes:



Incident response process activities.

Analyst communication logs simulating team interactions during incident handling.

Structured fields such as case identifiers, timestamps, state transitions, priorities, and observables.

Refined annotations validated by cybersecurity professionals to establish a reproducible ground truth.


The dataset is designed to be used as:



A benchmark resource for evaluating large language model outputs in the context of incident response datasets.

A research enabling resource to advance cyber defense, by enabling systematic studies of data quality, error patterns, and human-Artificial Intelligence collaboration in incident response.


This work contributes to filling a major data void in cybersecurity research by providing a reproducible, validated, and open source publicly available gold standard collection of synthetic cybersecurity incident response activities and communication logs datasets.
DOI: 10.15468/dl.muftt2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Croton glandulosus",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043721-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/physiome.30006022
title: Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

description: Accompanying OMEX file for the Physiome article "Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.17608/physiome.30006022.v1
title: Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule

description: Accompanying OMEX file for the Physiome article "Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.5281/zenodo.14647309
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nils Eberhard Svedelius, http://www.wikidata.org/entity/Q6197774. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6197774
DOI: 10.5281/zenodo.17081626
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nils Eberhard Svedelius, http://www.wikidata.org/entity/Q6197774. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6197774
DOI: 10.15468/dl.stfp5p
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Croton glandulosus",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 79 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043722-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/physiome.30006010
title: Reproducible implementation for article: Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal

description: Accompanying OMEX file for the Physiome article "Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.17608/physiome.30006010.v1
title: Reproducible implementation for article: Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal

description: Accompanying OMEX file for the Physiome article "Computational modeling of anoctamin 1 calcium-activated chloride channels as pacemaker channels in interstitial cells of Cajal".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.5281/zenodo.17081633
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nancy Tyson Burbidge, http://www.wikidata.org/entity/Q6963048. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q6963048
DOI: 10.5281/zenodo.17081637
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Theodore George Bentley Osborn, http://www.wikidata.org/entity/Q7781936. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q7781936
DOI: 10.5281/zenodo.17081636
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Julian Alfred Steyermark, http://www.wikidata.org/entity/Q250148. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q250148
DOI: 10.5281/zenodo.8137499
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Julian Alfred Steyermark, http://www.wikidata.org/entity/Q250148. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q250148
DOI: 10.5281/zenodo.17081640
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nathanael Pringsheim, http://www.wikidata.org/entity/Q64047. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q64047
DOI: 10.5281/zenodo.8322999
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nathanael Pringsheim, http://www.wikidata.org/entity/Q64047. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q64047
DOI: 10.15468/dl.7fz8xs
title: Occurrence Download

description: A dataset containing 1589 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lewisia pygmaea",
 "Year 1970-2025"
 ]
}

 The dataset includes 1589 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043725-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdxpth
title: Occurrence Download

description: A dataset containing 4783 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Croton glandulosus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4783 records from 109 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043723-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/physiome.30005977
title: Reproducible implementation for article: Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit

description: Accompanying OMEX file for the Physiome article "Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.17608/physiome.30005977.v1
title: Reproducible implementation for article: Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit

description: Accompanying OMEX file for the Physiome article "Reproducibility Study for a Computational Model of the Neurovascular Coupling Unit".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.5281/zenodo.17081651
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Joseph Zvonko Weber, http://www.wikidata.org/entity/Q21388163. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21388163
DOI: 10.5281/zenodo.17081654
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Ronald Vernon Southcott, http://www.wikidata.org/entity/Q3441567. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q3441567
DOI: 10.15468/dl.mjnh5h
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chrysichthys polli)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043726-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14340695
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jessie Louisa Hussey, http://www.wikidata.org/entity/Q66763410. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q66763410
DOI: 10.5281/zenodo.17081657
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jessie Louisa Hussey, http://www.wikidata.org/entity/Q66763410. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q66763410
DOI: 10.17608/physiome.30005968
title: Reproducible implementation for article: A theoretical model of slow wave regulation using voltage-dependent synthesis of inositol 1, 4, 5-trisphosphate

description: Accompanying OMEX file for the Physiome article "A theoretical model of slow wave regulation using voltage-dependent synthesis of inositol 1, 4, 5-trisphosphate".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.17608/physiome.30005968.v1
title: Reproducible implementation for article: A theoretical model of slow wave regulation using voltage-dependent synthesis of inositol 1, 4, 5-trisphosphate

description: Accompanying OMEX file for the Physiome article "A theoretical model of slow wave regulation using voltage-dependent synthesis of inositol 1, 4, 5-trisphosphate".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.15468/dl.gjd9ca
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zonaria pyrum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((40.81373 29.26705, 40.81373 50.94, -6.6 50.94, -6.6 29.26705, 40.81373 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 46 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043728-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dda9aj
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Metagrapsus curvatus"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043727-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6tpff
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Metaplax crenulata"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043729-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17081660
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by John Winslow MacSwain, http://www.wikidata.org/entity/Q21395256. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21395256
DOI: 10.5281/zenodo.17065614
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Austin R. Kelly, https://orcid.org/0000-0003-4783-9594. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.17081663
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Austin R. Kelly, https://orcid.org/0000-0003-4783-9594. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.5281/zenodo.17081664
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Jiří Danihelka, https://orcid.org/0000-0002-2640-7867. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
DOI: 10.15468/dl.qajy7m
title: Occurrence Download

description: A dataset containing 61963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-79.06626957219295 43.09506942635354, -79.06963699255074 43.095967249621545, -79.07317878721646 43.096366261284444, -79.07675875168978 43.09625111539411, -79.08023921039518 43.095626240488784, -79.08348632264418 43.0945156688664, -79.08637523955726 43.09296211018733, -79.08879491170973 43.09102530544163, -79.09065236125724 43.08877972525687, -79.09187625367329 43.08631170189567, -79.09241963204688 43.08371610609327, -79.0922617099403 43.08109269727448, -79.09140865568808 43.07854228800997, -79.08989334020879 43.07616287039032, -79.08777406032488 43.074045853095036, -79.08513228870177 43.07227255332928, -79.08206953835384 43.070911077722016, -79.0787034629011 43.07001371115767, -79.07516334223477 43.06961491295393, -79.07158512600384 43.06972999656164, -79.06810622362981 43.07035454292451, -79.06486023886376 43.07146456976226, -79.06197184893612 43.07301745035301, -79.05955202304291 43.07495354693954, -79.05769376243413 43.07719849670508, -79.05646852511303 43.079666063362616, -79.05592347274026 43.08226144570587, -79.05607964660464 43.08488491680731, -79.05693114452559 43.08743565461424, -79.05844533252196 43.089815617018495, -79.06056408542021 43.091933312402055, -79.06320601078386 43.093707320327006, -79.06626957219295 43.09506942635354))",
 "Year is one of (2019, 2020, 2021, 2022, 2023, 2024, 2025)",
 "KingdomKey is one of (Animalia, Fungi, Plantae)"
 ]
}

 The dataset includes 61963 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043674-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17608/physiome.30005953
title: Reproducible implementation for article: Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte

description: Accompanying OMEX file for the Physiome article "Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.17608/physiome.30005953.v1
title: Reproducible implementation for article: Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte

description: Accompanying OMEX file for the Physiome article "Reproducibility Study of Computational Modelling of Glucose Uptake by SGLT1 and GLUT2 in the Enterocyte".An OMEX archive is the Open Modelling Exchange format, the technical specification defining the format of the COMBINE archive, to allow it to be used within the COMBINE network. It contains all files required for the implementation of the model and reproduction of the simulation results presented. It can be opened by any type of ZIP reader - just rename the file extension from “.omex” to “.zip”.
DOI: 10.15468/dl.hvyqww
title: Occurrence Download

description: A dataset containing 81444 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex hostiana"
 ]
}

 The dataset includes 81444 records from 553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043613-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17081667
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Robbin Thorp, http://www.wikidata.org/entity/Q88023167. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q88023167
DOI: 10.5281/zenodo.8151340
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Robbin Thorp, http://www.wikidata.org/entity/Q88023167. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q88023167