cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3699031
title: Preprocessed data for find motives behind cross-platform forks from SWHGD dataset

description: The fork-based development mechanism provides the flexibilityand the unified processes for software teams to collaborate easilyin a distributed setting without too much coordination overhead.Currently, multiple social coding platforms support fork-based de-velopment, such as GitHub, GitLab, and Bitbucket. Although thesedifferent platforms virtually share the same features, they havedifferent emphasis. As GitHub is the most popular platform and thecorresponding data is publicly available, most of the current stud-ies are focusing on GitHub hosted projects. However, we observedanecdote evidences that people are confused about choosing amongthese platforms, and some projects are migrating from one platformto another, and the reasons behind these activities remain unknown.With the advances of Software Heritage Graph Dataset (SWHGD),we have the opportunity to investigate the forking activities acrossplatforms. In this paper, we conduct an exploratory study on 10popular open-source projects to identify cross-platform forks andinvestigate the motivation behind. Preliminary result shows thatcross-platform forks do exist, for the 10 subject systems in thisstudy, we found 81,357 forks in total among which 179 forks areon GitLab. Based on our qualitative analysis we found that most ofthe cross-platform forks that we identified are mirrors of anotherplatform, but we still find cases that were created due to preferenceof using certain functionalities (e.g. Continuous Integration(CI))supported by different platforms. This study lays the foundation offuture research directions, such as understanding the differencesbetween platforms and supporting cross-platform collaboration.
DOI: 10.17632/byv4ccdwwz.2
title: proliferation of adventitious roots of Panax notoginseng and ginsenoside accumulation

description: Panax notoginseng is an important medicinal plant. In this datasets, we showed the effect of proliferation of P. notoginseng adventitious roots and their growth and accumulation of three ginsenosides (Rg1, Re and Rb1) under different culture conditions. 1. The number and length of P. notoginseng adventitious roots. 2. The biomass of P. notoginseng adventitious roots. 3. Three ginsenosides accumulation of P. notoginseng adventitious roots.
DOI: 10.17632/p4dnddrszg.1
title: A culture system for the stable and high-efficiency proliferation of adventitious roots of Panax notoginseng and ginsenoside accumulation
DOI: 10.18716/nmrshiftdb2/75424
title: NMR data for 2-(3-bromophenyl)acetonitrile
DOI: 10.17632/9nsfnjnynb.1
title: Sudden strengthening of the Indian summer monsoon following termination of the YD event
DOI: 10.17632/byv4ccdwwz.3
title: proliferation of adventitious roots of Panax notoginseng and ginsenoside accumulation
DOI: 10.17632/prwpfydw26.1
title: The REY of the nodules collected from Shizi Cave in NE Sichuan, Central China
DOI: 10.17632/prwpfydw26.2
title: The REY of the nodules collected from Shizi Cave in NE Sichuan, Central China
DOI: 10.17632/jhkhvdgyfy.2
title: Data for: Genotyping-by-sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides)

description: In support of the manuscript by Bagley et al. (2020; see below) on quaking aspen phylogeography and ecological niche modeling (ENM), this accession provides 1) the in-house laboratory protocol used to extract DNA from aspen leaf tissues (modified from Strauss Lab); 2) the Supporting Information files for the corresponding manuscript (Bagley et al. 2020); 3) code used to conduct independent runs of the TASSEL-GBSv2 SNP discovery pipeline (Glaubitz et al. 2014) on our final (combined) genotyping-by-sequencing (GBS) dataset; 4) resulting SNP variant files from TASSEL-GBSv2 and final filtered variant call format (VCF) and genotype data files used during our genomic analyses; and 5) unfiltered vs filtered species occurrence data files and computer code used during our ENM analyses of our focal taxon, Populus tremuloides. REFERENCES Bagley, J. C., Heming, N. M., Gutiérrez, E. E., Devisetty, U. K., Mock, K. E., Eckert, A. J., & Strauss, S. H. (2020). Genotyping-by-sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides). Ecology and Evolution. Glaubitz, J. C., Casstevens, T. M., Lu, F., Harriman, J., Elshire, R. J., Sun, Q., & Buckler, E. S. (2014). TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline. PLoS One, 9(2): e90346
DOI: 10.17632/yct6974ssw.1
title: Effects of aflatoxin contaminated maize on Folsomia candida (Collembola)

description: The aflatoxin B1 (AFB1) producing mould, Aspergillus flavus, is spread to more northern regions with global warming. AFB1 can cause genotoxicity, oxidative stress, immunosuppression and necrosis in the liver, kidney and muscles in vertebrates, but the effect on invertebrates is not well known. Folsomia candida (Collembola) is a cosmopolitan species and could be easily bred in the laboratory because of its parthenogenetic reproduction. The aim of the present study was to determine whether AFB1 has a toxic effect on the survival and reproduction or whether the animals prefer to feed on A. flavus or yeast and to determine whether the animals avoid the aflatoxin contaminated soil or not. The mortality did not increased because of AFB1, but the reproduction was impaired. In addition, the animals feed on AFB1 contaminated maize but do not prefer it compared to yeast. Moreover, the animals are not only not avoiding the contaminated soil but preferred the AFB1 contaminated side. Most probably, because A. flavus could be high quality food when the animals consume the not toxin producer hyphae. Because of that the animals most probably try to consume the contaminated hyphae too. In conclusion, AFB1 contaminated maize is not recommended to be used as green manure in the soil in a native state. Alternative solutions could be the use of mycotoxin contaminated maize as biogas or after decontamination by bacterial and fungal strains, it could be used as manure.
DOI: 10.18716/nmrshiftdb2/75430
title: NMR data for 7-(diethylamino)-4-methylchromen-2-one
DOI: 10.17632/byv4ccdwwz.1
title: proliferation of adventitious roots of Panax notoginseng and ginsenoside accumulation

description: Panax notoginseng is an important medicinal plant. In this datasets, we showed the effect of proliferation of P. notoginseng adventitious roots and their growth and accumulation of three ginsenosides (Rg1, Re and Rb1) under different culture conditions. 1. The number and length of P. notoginseng adventitious roots. 2. The biomass of P. notoginseng adventitious roots. 3. Three ginsenosides accumulation of P. notoginseng adventitious roots.
DOI: 10.18716/nmrshiftdb2/75425
title: NMR data for 2-(3-methoxyphenyl)acetonitrile
DOI: 10.25919/5e622af2ceca5
title: Parkes observations for project P958 semester 2019OCTS_65

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until last year, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last two year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 31 bursts, five of which have been localised to host galaxies at redshifts ranging from 0.1 to 0.5. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. However one of the arcminute-localised ASKAP FRBs has recently been found to repeat. Here we propose to search and study repetitions in this FRB population. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections to characterise the fraction of bursts that repeat. For bursts that repeat the unique wide bandwidth observations will be used to test leading models of burst emission.
DOI: 10.5281/zenodo.3699125
title: Epidemiology of onchocerciasis-associated epilepsy in the Mbam and Sanaga river valleys of Cameroon: impact of more than 13 years of ivermectin

description: Dataset contains information collected during door-to-door epilepsy surveys in onchocerciasis-endemic villages of Cameroon.
description: {"references": ["12.\tSiewe Fodjo JN, Tatah G, Tabah EN, et al. Epidemiology of onchocerciasis-associated epilepsy in the Mbam and Sanaga river valleys of Cameroon: impact of more than 13 years of ivermectin. Infect Dis Poverty 2018; 7:114. doi:10.1186/s40249-018-0497-1"]}
DOI: 10.5281/zenodo.3699126
title: Epidemiology of onchocerciasis-associated epilepsy in the Mbam and Sanaga river valleys of Cameroon: impact of more than 13 years of ivermectin

description: Dataset contains information collected during door-to-door epilepsy surveys in onchocerciasis-endemic villages of Cameroon.
description: {"references": ["12.\tSiewe Fodjo JN, Tatah G, Tabah EN, et al. Epidemiology of onchocerciasis-associated epilepsy in the Mbam and Sanaga river valleys of Cameroon: impact of more than 13 years of ivermectin. Infect Dis Poverty 2018; 7:114. doi:10.1186/s40249-018-0497-1"]}
DOI: 10.17632/2fmbcgnfnm.1
title: Full-text screening form

description: Many studies have shown that NAFLD is indeed closely related to the occurrence of colon tumors.The aim of this study was to further establish an assessment for the risk associated with NAFLD and the site-specificity of colon tumors.We searched the PubMed,Embase,Cochrane,and Scopus databases published from January 1,1981,to December 15,2019,assessing the risk of colorectal neoplasms in patients with NAFLD.A total of 32 full-text articles were assessed for eligibility, and all of the studies that did not mention specific sites of the colon tumors or report complete dates were excluded during this process.A total of 32 full-text articles were assessed for eligibility, Finally, only 11 articles were included in the meta-analysis after further screening and discussion.the characteristics of the 21 excluded studies were summarized with the exact reasons for exclusion; additionally, the specific scores of the three components of NOS for each included article were marked.
DOI: 10.5519/qd.zbyvv3oq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (32 records)
DOI: 10.17632/9ktv578p59.4
title: Emotional Instability and Behavior Difficulties Scale (EIBDS)
DOI: 10.18716/nmrshiftdb2/75427
title: NMR data for 2-[3-(cyanomethyl)phenyl]acetonitrile
DOI: 10.17632/ww6g4t2r32.1
title: The researcher journey through a gender lens

description: Data underlying the analyses in chapters 1, 2, 3, and 5 of the report "The researcher journey through a gender lens" (www.elsevier.com/connect/gender-report), which provides an analysis of the researcher journey, analysed using a gender lens. Data on authors, grantees and patent applicants pertain to researchers active during two periods, 16 geographies, and 26 subject areas and 11 sub-fields of medicine. Theses data are provided at the aggregated level.
DOI: 10.18716/nmrshiftdb2/75426
title: NMR data for InChI=1S/C10H9NO2/c1-7(6-11)8-3-2-4-9(5-8)10(12)13/h2-5,7H,1H3,(H,12,13)
DOI: 10.17632/7m43jm2swh.1
title: Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau

description: This dataset includes 336 records of the Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau. Three fields are presented in the dataset, they are species name, longtitude and latitude.
DOI: 10.17632/7m43jm2swh.2
title: Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau

description: This dataset includes 336 records of the Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau. Three fields are presented in the dataset, they are species name, longtitude and latitude. Among these records, 69 were gathered by field investigation in 2013, 25 were downloaded from GBIF (https://www.gbif.org/), 98 were collected from specimens (http://www.cvh.ac.cn/), and the others were taken from the published literature (Yue et al., 2014; Liu and Qi, 2015; Liu et al., 2016; Ma and Sun, 2018). Reference Yue, P.P., Lu, X.F., Ye, R.R., Zhou, Y.B., Yang, S.B., Peng, M., 2014. Community characteristics of Stipa purpurea steppe in the Qinghai Lake region. Acta Prataculturae Sinica 23(4), 10–19. https://doi.10.3724/SP.J.1005.2008.01083. (in Chinese with English abstract) Liu, W.S., Qi, D.H., 2015. Variations of reproductive organs morphology of Stipa purpurea and relationship with climate on the Qinghai-Tibetan Plateau. Pratacultural Science 32(6), 942–951. https://doi.10.11829\j.issn.1001-0629.2014-0426. (in Chinese with English abstract) Liu, C., Newell, G., White, M., 2016. On the selection of thresholds for predicting species occurrence with presence-only data. Ecol. Evol. 6(1), 337–348. https://doi.10.1002/ece3.1878. Ma, B.B., Sun, J., 2018. Predicting the distribution of Stipa purpurea across the Tibetan Plateau via the MaxEnt model. BMC Ecol. 18, 10. https://doi.10.1186/s12898-018-0165-0.
DOI: 10.17632/7m43jm2swh.3
title: Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau

description: This dataset includes 336 records of the Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau. Three fields are presented in the dataset, they are species name, longtitude and latitude. Among these records, 69 were gathered by field investigation in 2013, 25 were downloaded from GBIF (https://www.gbif.org/), 98 were collected from specimens (http://www.cvh.ac.cn/), and the others were taken from the published literature (Yue et al., 2014; Liu and Qi, 2015; Liu et al., 2016; Ma and Sun, 2018). Yue, P.P., Lu, X.F., Ye, R.R., Zhou, Y.B., Yang, S.B., Peng, M., 2014. Community characteristics of Stipa purpurea steppe in the Qinghai Lake region. Acta Prataculturae Sinica 23(4), 10–19. https://doi.10.3724/SP.J.1005.2008.01083. (in Chinese with English abstract) Liu, W.S., Qi, D.H., 2015. Variations of reproductive organs morphology of Stipa purpurea and relationship with climate on the Qinghai-Tibetan Plateau. Pratacultural Science 32(6), 942–951. https://doi.10.11829\j.issn.1001-0629.2014-0426. (in Chinese with English abstract) Liu, W.S., Zhao, Y., You, J.L., Qi, D.H., Zhou, Y., Chen, J.K., Song, Z.P., 2016. Morphological and genetic variation along a North-to-South transect in Stipa purpurea, a dominant grass on the Qinghai-Tibetan Plateau: Implications for response to climate change. PLoS ONE 11(8), e0161972. https://doi.org/10.1371/journal.pone.0161972. Ma, B.B., Sun, J., 2018. Predicting the distribution of Stipa purpurea across the Tibetan Plateau via the MaxEnt model. BMC Ecol. 18, 10. https://doi.10.1186/s12898-018-0165-0.
DOI: 10.17632/7m43jm2swh.4
title: Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau

description: This dataset includes 336 records of the Spatial location of survy sites for Stipa purpurea grassland on the Tibetan Plateau. Three fields are presented in the dataset, they are species name, longtitude and latitude. Among these records, 69 were gathered by field investigation in 2013, 25 were downloaded from GBIF (https://www.gbif.org/), 98 were collected from specimens (http://www.cvh.ac.cn/), and the others were taken from the published literature (Yue et al., 2014; Liu and Qi, 2015; Liu et al., 2016; Ma and Sun, 2018). Yue, P.P., Lu, X.F., Ye, R.R., Zhou, Y.B., Yang, S.B., Peng, M., 2014. Community characteristics of Stipa purpurea steppe in the Qinghai Lake region. Acta Prataculturae Sinica 23(4), 10–19. https://doi.10.3724/SP.J.1005.2008.01083. (in Chinese with English abstract) Liu, W.S., Qi, D.H., 2015. Variations of reproductive organs morphology of Stipa purpurea and relationship with climate on the Qinghai-Tibetan Plateau. Pratacultural Science 32(6), 942–951. https://doi.10.11829\j.issn.1001-0629.2014-0426. (in Chinese with English abstract) Liu, W.S., Zhao, Y., You, J.L., Qi, D.H., Zhou, Y., Chen, J.K., Song, Z.P., 2016. Morphological and genetic variation along a North-to-South transect in Stipa purpurea, a dominant grass on the Qinghai-Tibetan Plateau: Implications for response to climate change. PLoS ONE 11(8), e0161972. https://doi.org/10.1371/journal.pone.0161972. Ma, B.B., Sun, J., 2018. Predicting the distribution of Stipa purpurea across the Tibetan Plateau via the MaxEnt model. BMC Ecol. 18, 10. https://doi.10.1186/s12898-018-0165-0.
DOI: 10.17632/yrhzkttr73.1
title: NON-NEUTRALIZING ANTIBODIES FROM A MARBURG INFECTION SURVIVOR MEDIATE PROTECTION BY INDUCTION OF STRONG FC-EFFECTOR FUNCTIONS AND ENHANCEMENT OF NEUTRALIZING EFFECTS OF OTHER ANTIBODIES, Philipp Ilinykh et al

description: MR235, MR228 peptide microarray
DOI: 10.17632/67fhd6v665.1
title: Dataset for scalable video coding videos

description: The mp4 file size is the size of the video of the specified dimensions. While the 264 size is the ‎size of the bitstream having 15 different levels. These levels are a mixture of various image ‎scales, bit rate, and frame rate. The three offered scales are: the original, 1/2 the original, and ‎‎1/4 the original. While the 5 available frame rates are: the main and its 4 divisions (1/2, 1/‎‎4, 1/8, and 1/16).‎
DOI: 10.18716/nmrshiftdb2/75662
title: NMR data for 3-formylbenzonitrile
DOI: 10.17632/4vbdh6j2tx.1
title: Bangkok Pollinator Data (Stewart & Waitayachart 2020)

description: Pollinator abundance and richness data collected from nine parks in Bangkok, Thailand during December 2017 - November 2018. Stewart AB, Waitayachart P. 2020. Year-round temporal stability of a tropical, urban plant-pollinator network. PLOS ONE. Abstract Plant-pollinator interactions are known to vary across time, both in terms of species composition and the associations between partner species. However, less is known about tropical pollination networks, and tropical urban parks provide a unique opportunity to study network stability in an environment where temperature and floral resources are relatively constant due to both the tropical climate as well as park horticulture. The objectives of this study were thus to examine the interactions between flowering plants and their potential pollinators in a large, tropical city (Bangkok, Thailand) across 12 consecutive months, and to assess the stability of network properties over time. We conducted monthly pollinator observations at 9 parks spaced throughout the city, and collected data on temperature, precipitation, floral abundance and floral species richness. We found that neither pollinator abundance nor richness varied significantly across months when all parks were pooled. However, pollinator abundance was significantly influenced by floral abundance, floral richness, and their interaction, and pollinator richness was significantly influenced by floral richness and precipitation. Finally, we found that network properties did not change across months, even as species composition did. We conclude that the year-round constancy of floral resources and climate conditions appear to create a network in dynamic equilibrium, where plant and pollinator species compositions change, but network properties remain stable. The results of this study provide useful information about how tropical pollinators respond to urban environments, which is particularly relevant given that most urban development is predicted to occur in the tropics.
DOI: 10.18716/nmrshiftdb2/75428
title: NMR data for 1,3-diethylbenzene
DOI: 10.17632/4mfb7nr3xs.1
title: cancer@biruk

description: SPSS
DOI: 10.17632/3v49p2dtnx.1
title: Predicting treatment effects in unipolar depression: a meta-review - supplementary material

description: Supplementary Material for meta-review. Results of systematic search Results of appraisal with AMSTAR 2
DOI: 10.18716/nmrshiftdb2/75429
title: NMR data for 1,4-diethylbenzene
DOI: 10.17632/tczn9t59rs.2
title: EEG+tACS signals for artefact removal

description: Data used in the article: http://www.mdpi.com/1424-8220/19/1/190. Please cite this if you make use of this data. On-phantom data: EEG data recorded from a phantom head model during the applications of tACS. These can be used to test the performance of artefact removal algorithms, knowing what the 'true' EEG signal is. The true signal is given in the *Sham*.mat files. The other files record the EEG for different stimulation settings. Recordings where the inputted EEG was an alpha test, and an N170 ERP are present. (ERP records not used in the paper above.)
DOI: 10.5281/zenodo.3699120
title: Supplementary Figures for the manuscript 'Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph' by Albergante et al.

description: Multidimensional datapoint clouds representing large datasets are frequently characterized by non‐trivial low‐dimensional geometry and topology which can be recovered by unsupervised machine learning approaches, in particular, by principal graphs. Principal graphs approximate the multivariate data by a graph injected into the data space with some constraints imposed on the node mapping. Here we present ElPiGraph, a scalable and robust method for constructing principal graphs. ElPiGraph exploits and further develops the concept of elastic energy, the topological graph grammar approach, and a gradient descent‐like optimization of the<br> graph topology. The method is able to withstand high levels of noise and is capable of approximating data point clouds via principal graph ensembles. This strategy can be used to estimate the statistical significance of complex data features and to summarize them into a single consensus principal graph. ElPiGraph deals efficiently with large datasets in various fields such as biology, where it can be used for example with single‐cell transcriptomic or epigenomic datasets to infer gene expression dynamics and recover differentiation landscapes.
DOI: 10.5281/zenodo.3699121
title: Supplementary Figures for the manuscript 'Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph' by Albergante et al.

description: Multidimensional datapoint clouds representing large datasets are frequently characterized by non‐trivial low‐dimensional geometry and topology which can be recovered by unsupervised machine learning approaches, in particular, by principal graphs. Principal graphs approximate the multivariate data by a graph injected into the data space with some constraints imposed on the node mapping. Here we present ElPiGraph, a scalable and robust method for constructing principal graphs. ElPiGraph exploits and further develops the concept of elastic energy, the topological graph grammar approach, and a gradient descent‐like optimization of the<br> graph topology. The method is able to withstand high levels of noise and is capable of approximating data point clouds via principal graph ensembles. This strategy can be used to estimate the statistical significance of complex data features and to summarize them into a single consensus principal graph. ElPiGraph deals efficiently with large datasets in various fields such as biology, where it can be used for example with single‐cell transcriptomic or epigenomic datasets to infer gene expression dynamics and recover differentiation landscapes.
DOI: 10.17632/z567vwbw26.1
title: Data for: The effect of acupressure on pain reduction during first stage of labour: A systematic review and meta-analysis

description: Supplementary information: Risk of bias of the included acupressure studies
DOI: 10.18716/nmrshiftdb2/75423
title: NMR data for 2-(3-fluorophenyl)acetonitrile