cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21088066
title: HIV multiomics microbiome data (16S)

description: 16S microbiome data from 97 HIV patients from the COCOMO cohort. Used in HIV multi-omics project
DOI: 10.6084/m9.figshare.21120268
title: HIV multiomics lipidomics data

description: Lipidomics data with patients ID for multiomics HIV paper
DOI: 10.25921/1hr9-6x40
title: ES60 Water Column Sonar Data Collected During EBS12VA
DOI: 10.6084/m9.figshare.21120271
title: HIV multiomics metabolomics data

description: Metabolomics data for multiomics project with patients IDs
DOI: 10.6084/m9.figshare.21118759
title: Non-coding heatmap plots

description: The folder contains the heatmap plots obtained from the gene burden analysis considering non-coding variants. The plots are provided in a static format (.jpeg) and in a more interactive one (.html). Additionally, tables generating the heatmaps are provided in a .txt file format.
DOI: 10.25934/pr00008430
title: Establishing the prevalence of metallo-B-lactamases and carbapenem-resistance in Gram negative pathogens

description: We are developing a portfolio of AMR tackling therapeutics that target the critical Gram negative pathogens as identified by the World Health Organisation. We are an AMR-focussed biotechnology company; our entire portfolio targets key AMR pathogens identified by the WHO. Information gathered from these datasets will greatly improve our development pathways for our programs and inform our screening processes for our compounds. The data will also provide important market analysis by revealing trends in specific AMR genotypes and phenotypes over time. Access to these data sets will improve patients outcomes by refining and accelerating the development of our novel therapeutics.
DOI: 10.6084/m9.figshare.21082168
title: Dynamic Impedance on Electrical Double Layer Capacitor

description: Dyanamic Impedance Row data on Electrical Double-Layer Capactior This repository contains signals digitally samples from a three electrodes compact electrochemical capacitor cell unders cyclic voltammetry experiment with a small multisine superimposed. The signals are: Voltage of the positive half-cell Voltage of the complete cell Current flowing in the cell The signals are sampled with a timestep of 2 microseconds. The frequencies in the multisine perturbation are saved in the freq.txt file. Files are saved with the Python Numpy package extension .npy
DOI: 10.6084/m9.figshare.21082168.v1
title: Dynamic Impedance on Electrical Double Layer Capacitor

description: Dyanamic Impedance Row data on Electrical Double-Layer Capactior This repository contains signals digitally samples from a three electrodes compact electrochemical capacitor cell unders cyclic voltammetry experiment with a small multisine superimposed. The signals are: Voltage of the positive half-cell Voltage of the complete cell Current flowing in the cell The signals are sampled with a timestep of 2 microseconds. The frequencies in the multisine perturbation are saved in the freq.txt file.
DOI: 10.6084/m9.figshare.21120370
title: diploeciton_nevermanni_zanfona_1.fasta.gz

description: .......
DOI: 10.6084/m9.figshare.21120370.v1
title: diploeciton_nevermanni_zanfona_1.fasta.gz

description: .......
DOI: 10.5281/zenodo.7080299
title: Non-exhaustive record of locations of Shap granite (Sg) boulders and Shap microgranite (Sa) clasts in the Lake District region, UK.

description: <strong><em>Non-exhaustive record (~10,000) of locations of Shap granite (Sg) boulders and Shap microgranite (Sa) clasts. Search area was limited from: in the NE, the eastern margin of Gaythorn Plain; in the NW, Shap Pink Quarry; in the SE, Farleton Fell and; in the SW, the locale of Kendal (approximate coordinates of the study area: NE: 54.499850° -2.519770°; NW: 54.468401° -2.685596°; SE: 54.226849° -2.519770°; SW: 54.227170° -2.770000°)</em></strong> The northern limit to the study area was selected to exclude the northern plume, which disrupted the earlier eastern plume over Crosby Ravensworth Fell. The western limit was selected to enclose the known western limit of the Mint plume. The eastern limit was selected to enclose the known eastern limit of the Lune plume. The southern limit was selected to enclose the broadening of the Mint plume in the vicinity of Kendal. A comprehensive field survey was made of lower Borrowdale and northwards. The western Sg plume down the Mint valley south to Kendal, and the area of Lune Gorge, south of Dillicar, were surveyed cursorily, mainly checking published locations and adding additional locations encountered during this exercise. Prior reports for the Mint valley show a well-defined narrow plume, so to reduce the workload, a more complete record of locations has yet to be compiled. Similarly, from prior reports, boulder locations are few in the region around Kendal and east to the southern portion of the Lune valley and the overall distribution, before clearances, was recorded adequately in the 19<sup>th</sup> C.
DOI: 10.5281/zenodo.7080298
title: Non-exhaustive record of locations of Shap granite (Sg) boulders and Shap microgranite (Sa) clasts in the Lake District region, UK.

description: <strong><em>Non-exhaustive record (~10,000) of locations of Shap granite (Sg) boulders and Shap microgranite (Sa) clasts. Search area was limited from: in the NE, the eastern margin of Gaythorn Plain; in the NW, Shap Pink Quarry; in the SE, Farleton Fell and; in the SW, the locale of Kendal (approximate coordinates of the study area: NE: 54.499850° -2.519770°; NW: 54.468401° -2.685596°; SE: 54.226849° -2.519770°; SW: 54.227170° -2.770000°)</em></strong> The northern limit to the study area was selected to exclude the northern plume, which disrupted the earlier eastern plume over Crosby Ravensworth Fell. The western limit was selected to enclose the known western limit of the Mint plume. The eastern limit was selected to enclose the known eastern limit of the Lune plume. The southern limit was selected to enclose the broadening of the Mint plume in the vicinity of Kendal. A comprehensive field survey was made of lower Borrowdale and northwards. The western Sg plume down the Mint valley south to Kendal, and the area of Lune Gorge, south of Dillicar, were surveyed cursorily, mainly checking published locations and adding additional locations encountered during this exercise. Prior reports for the Mint valley show a well-defined narrow plume, so to reduce the workload, a more complete record of locations has yet to be compiled. Similarly, from prior reports, boulder locations are few in the region around Kendal and east to the southern portion of the Lune valley and the overall distribution, before clearances, was recorded adequately in the 19<sup>th</sup> C.
DOI: 10.5519/qd.m4dhw2cq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.34740/kaggle/dsv/4208264
title: Elon Musk Tweets
DOI: 10.17632/zmfgbwpcc7.1
title: Share trading adoption survey data

description: Survey data on online share trading services
DOI: 10.17632/6dzyz3xcs6.1
title: Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas

description: In 2012 and 2013, Fisheries and Oceans Canada surveyed the benthos in two areas closed to bottom contact fishing, the Narwhal Overwintering and Coldwater Coral Zone (now the Disko Fan Conservation Area, DFCA), and the Hatton Basin Voluntary Coral Protection Zone (now the Hatton Basin Conservation Area, HBCA). Samples were collected following protocols recommended by the Arctic Council’s Circumpolar Biodiversity Monitoring Plan for the purposes of providing baseline data for future monitoring of benthic invertebrates in this sensitive region, and for facilitating pan-Arctic comparisons of benthic communities. Five biodiversity monitoring stations were established, four in the DFCA and one in the HBCA, each of which was fully sampled according to those protocols with Van Veen grabs or box corers, drop cameras and temperature recorders attached to the gear. This report summarises the grab/core-sampled benthic fauna collected during the 2012 survey of the Conservation Areas and complements another report documenting the epibenthos from the camera transects in the DFCA. Here we report on macrofauna in the 1-cm size fraction, and on foraminiferan meiofauna.

The data provided is presented in the following report (see related link) :
Jacobs, K., Bouchard Marmen, M., Rincón, B., MacDonald, B., Lirette, C., Gibb, O., Treble, M., and Kenchington, E. 2022. Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Can. Tech. Rep. Fish. Aquat. Sci. 3487: vi + 86 p.
DOI: 10.17632/994p293zcf.1
title: Semantic Similarity with Concept Senses

description: This dataset represents the results of the experimentation of a method for evaluating semantic similarity between concepts in a taxonomy.
The method is based on the information-theoretic approach and allows senses of concepts in a given context to be considered.
Relevance of senses is calculated in terms of semantic relatedness with the compared concepts.
In a previous work [9], the adopted semantic relatedness method was the one described in [10], while in this work we also adopted the ones described in [11], [12], [13], [14], and [15]. 

We applied our proposal by extending 7 methods for computing semantic similarity in a taxonomy, selected from the literature.
The methods considered in the experiment are referred to as R[2], W&P[3], L[4], J&C[5], P&S[6], A[7], and A&M[8]

The experiment was run on the well-known Miller and Charles benchmark dataset [1] for assessing semantic similarity.

The results are organized in six folders, each with the results related to one of the above semantic relatedness methods.
In each folder there is a set of files, each referring to one pair of the Miller and Charles dataset. In fact, for each pair of concepts, all the 28 pairs are considered as possible different contexts. 

REFERENCES
[1] Miller G.A., Charles W.G. 1991. Contextual correlates of semantic similarity. Language and Cognitive Processes 6(1).
[2] Resnik P. 1995. Using Information Content to Evaluate Semantic Similarity in a Taxonomy. Int. Joint Conf. on Artificial Intelligence, Montreal.
[3] Wu Z., Palmer M. 1994. Verb semantics and lexical selection. 32nd Annual Meeting of the Associations for Computational Linguistics.
[4] Lin D. 1998. An Information-Theoretic Definition of Similarity. Int. Conf. on Machine Learning.
[5] Jiang J.J., Conrath D.W. 1997. Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy. Inter. Conf. Research on Computational Linguistics.
[6] Pirrò G. 2009. A Semantic Similarity Metric Combining Features and Intrinsic Information Content. Data Knowl. Eng, 68(11).
[7] Adhikari A., Dutta B., Dutta A., Mondal D., Singh S. 2018. An intrinsic information content-based semantic similarity measure considering the disjoint common subsumers of concepts of an ontology. J. Assoc. Inf. Sci. Technol. 69(8).
[8] Adhikari A., Singh S., Mondal D., Dutta B., Dutta A. 2016. A Novel Information Theoretic Framework for Finding Semantic Similarity in WordNet.  CoRR, arXiv:1607.05422, abs/1607.05422.
[9] Formica A., Taglino F. 2021. An Enriched Information-Theoretic Definition of Semantic Similarity in a Taxonomy. IEEE Access, vol. 9.
[10] Information Content-based approach [Schuhmacher and Ponzetto, 2014]. 
[11] Linked Data Semantic Distance (LDSD) [Passant, 2010]. 
[12] Wikipedia Link-based Measure (WLM ) [Witten and Milne, 2008];
[13] Linked Open Data Description Overlap-based approach (LODDO) [Zhou et al. 2012] 
[14] Exclusivity-based [Hulpuş et al 2015]
[15] ASRMP [El Vaigh et al. 2020]
DOI: 10.17632/6dzyz3xcs6.2
title: Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas

description: In 2012 and 2013, Fisheries and Oceans Canada surveyed the benthos in two areas closed to bottom contact fishing, the Narwhal Overwintering and Coldwater Coral Zone (now the Disko Fan Conservation Area, DFCA), and the Hatton Basin Voluntary Coral Protection Zone (now the Hatton Basin Conservation Area, HBCA). Samples were collected following protocols recommended by the Arctic Council’s Circumpolar Biodiversity Monitoring Plan for the purposes of providing baseline data for future monitoring of benthic invertebrates in this sensitive region, and for facilitating pan-Arctic comparisons of benthic communities. Five biodiversity monitoring stations were established, four in the DFCA and one in the HBCA, each of which was fully sampled according to those protocols with Van Veen grabs or box corers, drop cameras and temperature recorders attached to the gear. A report summarizing the grab/core-sampled benthic fauna collected during the 2012 survey of the Conservation Areas (Jacobs et al. 2022) and complements another report documenting the epibenthos from the camera transects in the DFCA (Kenchington et al 2022). Data on macrofauna in the 1-cm size fraction, and on foraminiferan meiofauna are provided. In total, 101 macrofaunal taxa were identified and enumerated from 24 sediment samples from the five monitoring stations and one other location in the DFCA, of which biomass data were collected for 90 taxa. Those taxa were from 12 phyla (Annelida, Arthropoda, Brachiopoda, Bryozoa, Chordata, Cnidaria, Echinodermata, Mollusca, Nemertea, Platyhelminthes, Porifera, and Sipuncula) and 51 families, with the Annelida being the most diverse, followed by Porifera, Echinodermata and Bryozoa. Foraminiferan meiofauna were identified from another 12 sediment samples, all from the four monitoring stations in the DFCA. All samples contained both calcareous and agglutinated species. In total, 41 agglutinated taxa were identified, including 36 to species, four to the genus level, and one general taxon. Calcareous foraminifera were identified to 46 taxa, including 34 species, 11 others identified to the genus level, and one general taxon. Additionally, three species of planktonic foraminifera were present, giving a total of 90 taxa. Diversity indices for each sample were provided in the report based on these data for both macrofauna and meiofauna. Multivariate analyses were performed to compare samples and stations by taxon composition and the environment. Those results provide baseline data on the benthic fauna in this area that will serve as a reference for future monitoring of a region that is undergoing rapid environmental change.

Reference:
Jacobs, K., Bouchard Marmen, M., Rincón, B., MacDonald, B., Lirette, C., Gibb, O., Treble, M., and Kenchington, E. 2022. Biodiversity Monitoring Stations for Benthic Macrofauna and Meiofauna in the Disko Fan and Hatton Basin Conservation Areas. Can. Tech. Rep. Fish. Aquat. Sci. 3487: vi + 86 p.
DOI: 10.17632/r984znfbkz.2
title: Dermatologic visits in the emergency department before and after the Affordable Care Act 

description: Supplemental Methods 
Supplemental Table 1 & 2
DOI: 10.17632/gvh2rjbm32.1
title: Digital transformation and HR

description: A questionnaire survey of 1,000 respondents was conducted via a national online panel to identify levels of ICT self-efficacy, uncertainty, and perceived opportunities toward DT from the perspective of three different generations.
DOI: 10.17632/z3z6w3dsz4.1
title: Forest cover changes and forest management approaches in Kalulu Forest Reserve, Central Zambia

description: The data pertains to interviews that were conducted with squatters in Kalulu Local Forest , Kabwe Zambia. The interviews centered on squatters perceptions on the effectiveness of  forest management.
DOI: 10.17632/tdsxphhydc.1
title: Gender and legume production in Chipata Zambia: A changing Climate Context

description: The data was collected through semi structured interviews with male and female smallholder farmers engaged in the production of legumes in Eastern Zambia
DOI: 10.17632/fjv74v2w65.2
title: Real-World Safety and Clinical Response of Janus Kinase Inhibitor Upadacitinib in the Treatment of Hidradenitis Suppurativa: A Retrospective Cohort Study

description: Real-World Safety and Clinical Response of Janus Kinase Inhibitor Upadacitinib in the Treatment of Hidradenitis Suppurativa: A Retrospective Cohort Study - JAAD 2022
DOI: 10.17632/x2pbw86sfc.1
title: Hf6Ta2O17 structures (DFT)

description: CIF files of the relaxed structures obtained from DFT. PBE was used with GPAW code
DOI: 10.17632/9ftc6z8znd.1
title: The influence of fatigue on neuropsychological performance in COVID-19 survivors dataset.

description: This dataset is complementary material for the article "The influence of post-COVID fatigue on neuropsychological performance", in this research we analyzed the relationship between the presence of post-COVID fatigue and neuropsychological performance in individuals who tested positive to SARS-CoV-2 and negative controls. Our research hypothesis was that post-COVID fatigue has a negative impact on neuropsychological performance. The referred data consists of 1) study participants' demographic and clinical characteristics, including SARS-CoV-2 status, determined by the COVID-19 Diagnostic Center at Autonomous University of Baja California (UABC) in Tijuana, Mexico, 2) normalized scores from subtests of BANFE-2 and NEUROPSI, the two neuropsychological assessment instruments performed by the participants, normalized scores were obtained according to manual procedures, in the case of BANFE-2, normalized scores range from 1 to 19, while in NEUROPSI, they range from -3 to +3, this dataset also contains 3) global parameters from the neuropsychological assessment, including total scores from BANFE-2 and NEUROPSI, as well as total errors in the assessment. Data was obtained through telephone interview. Neuropsychological data were analyzed using a multiple linear regression model that allowed to measure the influence of post-COVID fatigue, as well as demographical and clinical variables over neuropsychological performance, as explained in detail in the "steps to reproduce" section. We observed significant regression analyzes in the Alphabetical Arrangement Lists 1 and 2 and Consecutive Subtraction B (100-7) tasks from BANFE-2, and in BANFE-2 total score, NEUROPSI total score and total errors in the assessment, where in all cases significant coefficients were obtained for the variable "study condition" with a lower neuropsychological performance in participants with post-COVID fatigue compared to negative controls.
DOI: 10.17632/gktp9y2sss.1
title: Supplementary file - Participants' quotations "Health system performance, mitigation, and imperative reform approaches in the Kurdistan Region of Iraq: a qualitative swot analysis from the stakeholder’s point of view"

description: This file contains quotations of key informants who participated in the study to solicit opinions on the existing health system in the Kurdistan Region of Iraq and identify the most imperative reform steps.
DOI: 10.17632/2xwjzjzvyn.1
title: Dual mapping of RNA-seq samples from blood of visceral leishmaniasis patients.

description: This dataset contains read count output files from STAR aligner using combined reference genome for dual RNA-seq mapping strategy. Raw fastq files (E-MTAB-11047) were trimmed and used for mapping to a concatenated host/parasite genome (Homo sapiens GRCh38.p13 and Leishmania infantum GCA_900500625.1 available at ENSEMBL). Group of samples: asymptomatic (A*.tab files), diseased patients with active infection before the treatment (P*D0*.tab files) and cured visceral leishmaniasis patients (P*D180*.tab files). More details of the RNA-seq experiment and data analysis can be found in related links.
DOI: 10.17632/cgrphxc976.1
title: Talker-specificity and token-specificity in recognition memory

description: Data and analysis script associated with the manuscript, "Talker-specificity and token-specificity in recognition memory" by William Clapp, Charlotte Vaughn, Simon Todd, & Meghan Sumner.
DOI: 10.17632/wwnz4j452d.1
title: Fuerza laboral en salud y violencia laboral en unidades de cuidado crítico del adulto

description: Anexos complementarios datallados para el artículo.
DOI: 10.17632/mxjzzj64k2.1
title: Data for: Economic Optimization of a Thermal Solar Power Plant that Operates with a HBR Cycle by Increasing Sales Revenue

description: The main sizing results of the reference powerplant are showed in 'Main sizing results.xls'
The comparison of the production hours distribution between Solution 1 and Solution 2 for October, November and December is showed in 'Production hourly comparison O-D.xlsx'
The hourly net energy production for each month in the three cases is showed in 'hourly net energy production for each month.xlsx'
DOI: 10.17632/bzzthwgpdj.1
title: Data for: Nutrient limitation of phytoplankton in three tributaries of Chesapeake Bay: Detecting responses following nutrient reductions

description: This data archive contains the monitoring data for nutrient bioassays and water-quality parameters collected at six tidal monitoring locations in three major tributaries to Chesapeake Bay, namely, the Choptank, Patuxent, and Potomac Rivers. These data sets can be found in the first folder “1. Monitoring Data” of the data archive. 

The second folder “2. Model Code” contains R scripts for developing the classification and regression tree (CART) models to relate the water-quality monitoring data to the nutrient bioassays each tributary location. These scripts have been applied to all six tidal monitoring stations. For the purpose of demonstration, this data archive shows the workflow and saves R workspaces and output files for one example station, which is ET5.2 (Lower Choptank River near Route 50 Bridge at Cambridge, Maryland).

The data and scripts stored here are also those used in the manuscript titled “Nutrient limitation of phytoplankton in three tributaries of Chesapeake Bay: Detecting responses following nutrient reductions.”
DOI: 10.17632/bzzthwgpdj.2
title: Data for: Nutrient limitation of phytoplankton in three tributaries of Chesapeake Bay: Detecting responses following nutrient reductions

description: This data archive contains the monitoring data for nutrient bioassays and water-quality parameters collected at six tidal monitoring locations in three major tributaries to Chesapeake Bay, namely, the Choptank, Patuxent, and Potomac Rivers. These data sets can be found in the first folder “1. Monitoring Data”. 

The second folder “2. Model Code” contains R scripts for developing the classification and regression tree (CART) models to relate the water-quality monitoring data to the nutrient bioassays at each tributary station. These scripts have been applied to all six tidal monitoring stations. For the purpose of demonstration, this data archive shows the workflow and saves R workspaces and output files for one example station, which is ET5.2 (Lower Choptank River near Route 50 Bridge at Cambridge, Maryland).

The data and scripts archived here are also those used in the following publication: Zhang, Q., T. R. Fisher, C. Buchanan, A. B. Gustafson, R. R. Karrh, R. R. Murphy, J. M. Testa, R. Tian and P. J. Tango, 2022. Nutrient limitation of phytoplankton in three tributaries of Chesapeake Bay: Detecting responses following nutrient reductions. Water Research, 119099, DOI: 10.1016/j.watres.2022.119099.