cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17074715.v1
title: Supplementary Material for: Mapping Sequential IgE-Binding Epitopes on Major and Minor Egg Allergens

description: <b><i>Introduction:</i></b> Molecular studies of hen’s egg allergens help define allergic phenotypes, with IgE to sequential (linear) epitopes on the ovomucoid (OVM) protein associated with a persistent disease. Epitope profiles of other egg allergens are largely unknown. The objective of this study was to construct an epitope library spanning across 7 allergens and further evaluate sequential epitope-specific (<i>ses-</i>)IgE and <i>ses-</i>IgG<sub>4</sub> among baked-egg reactive or tolerant children. <b><i>Methods:</i></b> A Bead-Based Epitope Assay was used to identify informative IgE epitopes from 15-mer overlapping peptides covering the entire OVM and ovalbumin (OVA) proteins in 38 egg allergic children. An amalgamation of 12 B-cell epitope prediction tools was developed using experimentally identified epitopes. This ensemble was used to predict epitopes from ovotransferrin, lysozyme, serum albumin, vitellogenin-II fragment, and vitellogenin-1 precursor. <i>Ses-</i>IgE and <i>ses-</i>IgG<sub>4</sub> repertoires of 135 egg allergic children (82 reactive to baked-egg, the remaining 52 tolerant), 46 atopic controls, and 11 healthy subjects were compared. <b><i>Results:</i></b> 183 peptides from OVM and OVA were screened and used to create an aggregate algorithm, improving predictions of 12 individual tools. A final library of 65 sequential epitopes from 7 proteins was constructed. Egg allergic children had higher <i>ses-</i>IgE and lower <i>ses-</i>IgG<sub>4</sub> to predominantly OVM epitopes than both atopic and healthy controls. Baked-egg reactive children had similar <i>ses-</i>IgG<sub>4</sub> but greater <i>ses-</i>IgE than tolerant group. A combination of OVA-sIgE with <i>ses-</i>IgEs to OVM-023 and OVA-028 was the best predictor of reactive phenotype. <b><i>Conclusion:</i></b> We have created a comprehensive epitope library and showed that <i>ses-</i>IgE is a potential biomarker of baked-egg reactivity.
DOI: 10.6084/m9.figshare.24567208.v1
title: Supplementary Material for: Olfactory cues of naturally occurring systemic inflammation: A pilot study of seasonal allergy

description: Introduction: In an attempt to avoid contact with infectious individuals, humans likely respond to generalised rather than specific markers of disease. Humans may thus perceive a non-infectious individual as socially less attractive if they look (e.g., have facial discoloration), move (e.g., have a slower walking pace), or sound (e.g., sneeze) sick. This pilot study tested whether humans are averse to the body odour of non-infectious individuals with a low-grade systemic inflammation. Methods: We collected the axillary body odour of individuals with severe seasonal allergy (N = 14) and healthy controls (N = 10) during and outside the allergy season and measured serum levels of two inflammatory cytokines (tumor necrosis factor-α, interleukin-5). Independent participants (N = 67) then sampled and rated these odours on intensity and pleasantness. Results: While individuals with seasonal allergy had nominally more unpleasant and intense body odours during the allergy season - relative to outside of the allergy season and to healthy controls - these effects were not significant. When examining immune markers, the change in perceived pleasantness of an individual’s body odour (from out- to inside pollen season), was significantly related to the change in their interleukin-5 levels but not to tumor necrosis factor-α. Discussion: Our findings tentatively suggest that the human olfactory system could be sensitive to inflammation as present in a non-communicable condition. Larger replications are required to determine the role of olfaction in the perception of infectious and non-infectious (e.g., chronic diseases) conditions.
DOI: 10.6084/m9.figshare.27309021.v1
title: FDEMATEL-data Appendix

description: This study will apply the fuzzy DEMATEL approach to investigate issues influencing green e-commerce.
DOI: 10.17632/4h9xmvzxf5
title: Data for: A preliminary reassessment of the Siberian cratonic basement with new U-Pb-Hf detrital zircon data

description: Supplemetary file 1 (Priyatkina et al). New Hf in zircon analysis of detrital zircons from Precambrian sedimentary rocks of Siberia
DOI: 10.17632/7svx5fdt7h
title: Supplemental table

description: Supplemental table (Table A1)
DOI: 10.17632/hmg4rnczvt
title: The Alphabet of Sindhu Prakrit (the Decipherment of Indus Script)

description: The principal aspect of the paper is the structural analysis of the signs of the Indus script and comparison with archaic scripts. The outcomes are not based on surmise, but have been established on logic. The paper encompasses approximately all more than 400 signs of Indus script rather than any section of selected signs or texts. It justifies each sign and classifies vowels, diphthongs, consonants, dual consonants, aspirates, combined consonants and ligatures. It convincingly identifies the uniform procedure of diacritical marks, diphthongs, dual consonants, and aspirates in the alphabet. It also recognizes the writing styles of combining consonants. Some vowel and consonant signs are elaborated meticulously in the context of the Indus Texts. The context verifies the Indus Texts as an earlier documentation of Rig-Veda, and links up the sequence of opaque and lost history. Hence the language of Indus seals, Sindhu Prakrit possessed a completely phonetic alphabet/ script with consonants, aspirated consonants, vowels diphthongs implosive and dual sounds. It was made scientifically the extraction of signs is based on phonological classification and methodical logic it appears more perfect than even modern scripts. However the decipherment of the Indus script as an alphabet is an entirely innovative idea and definitely it will provoke the scholars to verify the results, any scholar in the field can apply the alphabet for the readings of Indus texts. The Paper unveils the long-lasted mystery and enigma of the Indus civilization and sums up the debate about human history and its origins.
DOI: 10.17632/snh5m99yxr
title: Supplementary materials for the article "On a geometric approach to the estimation of interpolation projectors"

description: The dataset contains results of computer calculations for the paper

Nevskii M.V., Ukhalov A.Y. On a geometric approach to the estimation of interpolation projectors. Modeling and Analysis of Information Systems. 2023;30(3):246-257. (In Russ.) https://doi.org/10.18255/1818-1015-2023-3-246-257
English translation: Nevskii, M.V., Ukhalov, A.Y. On a Geometric Approach to the Estimation of Interpolation Projectors. Aut. Control Comp. Sci. 58, 879–888 (2024). https://doi.org/10.3103/S0146411624700330
DOI: 10.17632/2zjmtnrdgd
title: Canadian Provincial Input-Output Tables of Embodied Emissions, 2010-2015

description: This dataset was created using an environmentally extended multi-region input-output (EE-MRIO) model, which uses an input and output approach that tracks flows of monetary values of trade to allot environmental impacts between regions and sectors. The MRIO model is a predominant method for the estimation of consumption-based greenhouse gas (GHG) accounting. Our particular model was constructed using Python. The tabulated results show the flows of emissions embodied in imports, exports, and domestic consumption of a region. In our case, we calculated the consumption emissions of all Canadian provinces and territories from 2010-2015. The tables show intersectoral, interprovincial, and international flows of embodied emissions, presented in the North American Industry Classification System (NAICS)" Regarding our model’s inputs for estimating embodied emissions in international trade, we utilized the Environmental Accounts and financial input-output tables from the World Input-Output Database (WIOD). For estimating embodied emissions in Canada and Canada’s trade, we used Canada’s Physical Flow Accounts, Interprovincial Input-Output and Supply-Use Tables, and Canada’s Trade Online Data. These datasets were accessed in August 2019 from the following websites (see links): • WIOD Input-Output Tables: http://www.wiod.org/home • WIOD Environmental Accounts 2013: http://www.wiod.org/home • WIOD Environmental Accounts 2019: https://ec.europa.eu/jrc/en/research-topic/economic-environmental-and-social-effects-of-globalisation • Interprovincial Input-Output Tables: https://www150.statcan.gc.ca/n1/en/catalogue/15-211-X • Interprovincial Supply-Use Tables: https://www150.statcan.gc.ca/n1/en/catalogue/15-602-X • Physical Flow Accounts: https://www150.statcan.gc.ca/t1/tbl1/en/tv.action?pid=3810009701 • Canada’s Trade Online Data: https://www.ic.gc.ca/eic/site/tdo-dcd.nsf/eng/Home
DOI: 10.17632/j9w36k8b4j
title: Финансирование инновационных компаний с учетом их характеристик на разных этапах жизненного цикла_dataset

description: В результате формирования выборки из проведенных сделок на российском рынке за период с 2019 г. по 2024 г. в рамках финансирования инновационных компаний на разных этапах жизненного цикла, а также использования регрессионного анализа с участием интегрального показателя в виде размера финансирования и несколькими объясняющими переменными было установлено, что наиболее значимыми факторами являются: число основателей, отношение к ИТ-сектору, размер выручки, ситуация на фондовом рынке, участие венчурных фондов на прошлых раундах финансирования (значимость данных факторов варьируются исходя из этапа жизненного цикла).
Полученные методологические и прикладные результаты могут быть использованы инновационными компаниями в дальнейшем в целях формирования стратегий по привлечению финансирования в создание, внедрение и последующее развитие инновационных товаров и услуг.
DOI: 10.6084/m9.figshare.24987051.v1
title: A comparative analysis of plastome evolution in autotrophic Piperales - additional plastome reconstructions

description: The manuscript titled 'A comparative analysis of plastome evolution in autotrophic Piperales' provides a review of all currently available plastomes of autotrophic Piperales, alongside new data for previously missing genera. We study plastome evolution while focusing on structural variation and explore multiple events of reading frame disruption. Our data highlight the IR-LSC junctions as potential marker for discrimination of various taxonomic levels.The here published data compliments the data available on GenBank. The plastome reconstructions provided here are based on sequence raw data available on the Sequence Read Archive (SRA). In our study, we have assembled the plastomes from this data and explore various topics of comparative genomics.The reconstructed plastomes are separated by accession and contain the information of the underlying sequence data in the form of the unique SRA identifier.
DOI: 10.17632/h46sb927b5
title: Data for: A quasi two-dimensional friction-thermo-hydro-mechanical model for high-speed landslides
DOI: 10.17632/xbsvbxjm66
title: ICESat-2 ATL08 footprint point AGB and canopy metrics data

description: The ICESat-2 ATL08 footprint point AGB and canopy metrics dataset provides aboveground biomass (AGB) estimates and canopy structural parameters at the footprint level (~17 m diameter) derived from the ICESat-2 ATL08 product. This dataset includes key variables such as latitude and longitude, AGB (Mg/ha), canopy height (h_canopy), canopy cover, canopy density, and statistical height metrics (h_max, h_95, h_50). Additional attributes include photon counts and beam type (strong/weak) to assess data quality. AGB estimates are obtained from forest inventory data and linked to ICESat-2 footprints for analysis. The dataset is valuable for biomass estimation, forest structure analysis, and carbon stock assessments. To enhance modeling accuracy, it can be integrated with optical or radar remote sensing data. Data quality is influenced by factors such as laser signal strength, terrain conditions, and atmospheric interference, requiring appropriate filtering techniques.
DOI: 10.6084/m9.figshare.25881019.v1
title: Dataset of seagrass bed monitoring, Puerto Morelos, Mexico, 2019

description: This data set (in Excel format), contains in-situ condition information for six reef lagoon sites from Puerto Morelos Arrecife National Park, surveyed in June 2019. We present results on the spatial variability of the seagrasses communities through biological variables: specific meadow composition, seagrass density, canopy height, and biomass. This product represents the application of Conabio's monitoring protocols for the seagrass ecosystem of the protected natural areas of the Mexican Caribbean.<b>Links to supplementary information</b>: Marine-Coastal Information and Analysis System (SIMAR) https://simar.conabio.gob.mx/<b>Acknowledgments</b>The authors acknowledge the logistical support provided by CONABIO, the Marine Science and Limnology Institute of UNAM, and the director of the Arrecife de Puerto Morelos National Park, María del Carmen García Rivas. <br><br>
DOI: 10.6084/m9.figshare.27074422.v1
title: Supplementary Material for: Towards senior-friendly hospitals: an overview of programs, their elements and effectiveness in improving care

description: Comprehensive “senior-friendly hospital” (SFH)-programs have been developed to counteract negative health outcomes in hospitalized older adults. The aim of this narrative review was to provide an overview of published SFH-programs and their elements, and to summarize evidence of their effect on quality of care and patient satisfaction. A search of the databases Pubmed/Medline from inception to July 2023, and of governmental, regional and hospital websites was performed. Programs were earmarked as SFH-programs if they primarily focused on the hospital setting, and comprised a hospital-wide, multi-level approach and consisted of multiple elements. Articles and reports were included if participants were hospitalized and aged 60 years and older, and described the effect on quality of care or patient satisfaction. Articles focusing on specific patient groups or wards, or on a health system or network were excluded. Ten SFH-programs were identified, with mutual elements like ‘organizational support’, ‘social climate and services’, ‘processes of care’, and ‘physical environment’. Only for the “Acute Care for Elders” program (USA), evidence was found showing positive effects on functional abilities, falls, delirium, length of stay, and patient satisfaction; effectiveness of other SFH-programs could not be found. Elements of SFH-programs may improve care for hospitalized older adults, but the evidence of their effectiveness is scarce.
DOI: 10.17632/p3hfgr5j3m
title: INDONESIAN HOAX NEWS DETECTION DATASET

description: This dataset is part of this study: I. Y. R. Pratiwi, R. A. Asmara and F. Rahutomo, "Study of hoax news detection using naïve bayes classifier in Indonesian language," 2017 11th International Conference on Information & Communication Technology and System (ICTS), Surabaya, 2017, pp. 73-78. doi: 10.1109/ICTS.2017.8265649 keywords: {Bayes methods;Internet;natural language processing;pattern classification;Web sites;naïve bayes classifier;Indonesian language;online news articles;internet;websites;hoax recall;hoax precision;hoax news article detection;automatic hoax news detection;fake news article;search news;Information and communication technology;Google;Uniform resource locators;Hoax news detection;dataset;naïve bayes classifier}, URL: http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=8265649&isnumber=8265591 The dataset contains five files: 1. 250 news with valid hoax label.csv The file contains 250 Indonesian news texts with hoax/ valid label 2. 250 news labelling process.xlsx The file contains information on the labelling process of 10 news topics. The news links are labelled by three referees wether it is hoax or valid. The final label is derived by voting procedure of the three referees. 3. 250 news experiment documentation.xlsx The file contains experiments documentation on the dataset by NBC classifier. The experiments were conducted three times with different training/ testing size. The schemes of training-testing are: 60-40, 70-30, and 80-20. 4. 600 news with valid hoax label.csv The file contains 600 Indonesian news texts with hoax/ valid label 5. 600 news labelling process.xlsx The file contains information on the labelling process of 12 news topics. The news links are labelled by three referees wether it is hoax or valid. The final label is derived by voting procedure of the three referees.
DOI: 10.17632/7wzsyk6355
title: Osteochondroprogenitor cells and neutrophils expressing p21 and senescence markers modulate fracture repair

description: In the present study we leverage the power of mass cytometry by time-of-flight (CyTOF) to define, at the single-cell level, mesenchymal bone and marrow senescent cells in mice during fracture. Three main CyTOF experiments were performed:
1) TIMECOURSE: Assessment of senescent cell burden in skeletal and immune cell populations during a 28-day timecourse of fracture healing.
2) P21-ATTAC: Identification of cell populations targeted through p21+ cell clearance in p21-ATTAC mice.
3) OCH-STEM: In-depth assessment of osteochondroprogenitor (OCH) cells through expanded panel, including skeletal stem cell (SSC) markers.
DOI: 10.17632/mygc3pt7rg
title: Microanalytical investigation of K-rich fenites from the Catalão II Complex 

description: SD1 (Micro-XRF results for carbonatite-fenite samples). 
SD2 (Major and minor elements in phlogopite, tetraferriphlogopite and orthoclase using EMPA, in samples from the Boa Vista Nb mine of the Catalão II Complex.
DOI: 10.17632/xn7yj8vvxg
title: Accelerated Rehabilitation versus Conventional Rehabilitation in Total Hip Arthroplasty (ARTHA): A Randomized Double Blinded Clinical Trial

description: Data about a A Randomized Double Blinded Clinical Trial comparing the Accelerated Rehabilitation versus Conventional Rehabilitation in subjects submited to a Total Hip Arthroplasty
DOI: 10.21233/atke-e208
title: Takao ostracode surface sample dataset

description: Raw data for the Takao ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28020776.v1
title: 7.4 ng

description: This dataset was used to explore deep learning models ability to quantify analyte load of LFA. Commercially available COVID-19 Rapid test kits, which test for the presence of nucleocapsid(N) protein, were photographed with a smartphone after results were ready. During the testing a known amount of N protein was added to the extraction buffer tube after which the following steps were performed according to manufacturer's instructions. This dataset was used to train deep learning models to classify various levels of N protein.
DOI: 10.17632/j5954hvbnr
title: Spot IDs for spatial barcode demultiplexing of fastq files

description: Spot IDs for spatial barcode demultiplexing of fastq files of spatial datasets from from the article: Asp M. et al. A spatiotemporal organ-wide gene expression and cell atlas of the developing human heart. Cell. 2019 Dec 12;179(7):1647-1660.e19. doi: 10.1016/j.cell.2019.11.025
DOI: 10.6084/m9.figshare.26393995.v1
title: Data tables for Quantification of gene expression levels and correction for batch effects

description: This archive contains all files necessary to run related scripts on GitHub.
DOI: 10.17632/fn8dgf4hb5
title: Mango Dataset: A Comprehensive Resource for Agricultural Research and Disease Detection

description: The Mango Leaf Disease Detection Dataset is expected to become a benchmark resource for researchers, practitioners, and stakeholders involved in agriculture, machine learning, and computer vision to detect and classify diseases affecting the mango plant. This dataset is intended to contribute to furthering agricultural technology by improving crop protection strategies and enabling effective machine-learning model development for disease diagnosis.

It includes high-resolution images of mango leaves that were collected from August 15 to August 29, 2023, from the mango garden of Supu Ashulia, Bangladesh. In all, there are 1,319 original images at a resolution of 1000×1000 pixels showing various conditions of the mango leaves in natural environmental conditions. The classes of the dataset are divided into five main classes, namely Anthracnose, Die Black, Gall Midge, Powdery Mildew, and Healthy. These categories represent different diseased statuses and healthy conditions of the leaves, therefore providing a very fair platform for training and testing the model.

Class imbalance has been addressed, and the utility of the dataset improved through augmentation techniques. Each class is expanded to 1,000 images, totaling 5,000 augmented images. Flipping, rotation, scaling, and other augmentation techniques have ensured increased diversity and robustness in the dataset. The augmented images are supposed to provide better generalization by the model and an accuracy increase in detecting and classifying mango leaf diseases across a wide set of conditions.

Folder Structure:
1. Original Mango Leaf Disease Dataset:
Number of datasets: 1,319
Data format: .jpg

2. Augmented Mango Leaf Disease Dataset:
Number of datasets: 5,000
Data format: .jpg
DOI: 10.17632/35ksks3k3n
title: Smc5/6 functions jointly with the Sgs1-Top3-Rmi1 DNA resolvase to complete chromosome replication at natural pause sites
DOI: 10.17632/sydw9pshmt
title: Database on Allometric Model

description: We have created a database containing 3557 empirical models that capture the allometric relationships between DBH and plant biomass. The model takes the form of a power function with DBH as a single variable. The database also includes tree species information, research objects, fitting data, site information, and citation information. Tree species information includes the names of tree species, the origin of the stand (including plantation, virgin forest, and secondary forest), and the type of forest (including tropical rainforest, subtropical evergreen forest, temperate forest, boreal forest and others). Research objects are categorized into trunk, branch, leaf, above-ground, below-ground/root, and whole, based on plant organs/parts. The information used for fitting includes the parameters of the allometric model (a, b), coefficient of determination (R2), fitting sample (n), starting diameter at breast height (Dmin, cm), and maximum diameter at breast height (Dmax, cm). Site information such as latitude and longitude (°), mean annual temperature (°C), mean annual rainfall (mm), and altitude (m) of the study site was also included.
DOI: 10.17632/vmr63gtyrw
title: Inter-basin water transfers and water rebound effects: the South-North Water Transfer Project in China

description: The data and code for the article "Inter-basin water transfers and water rebound effects: the South-North Water Transfer Project in China"
DOI: 10.17632/7hn4rm94dd
title: Single-molecule tracking reveals the functional allocation, in vivo interactions and spatial organization of universal transcription factor NusG. El Sayyed et al

description: These are microscopy data using superfolder GFP fused to NusG to show the effect of 1,6-Hexanediol treatment on NusG biomolecular condensates stability