cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pxn59g
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Honduras, Guatemala)",
 "TaxonKey is Artibeus"
 ]
}

 The dataset includes 4451 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018807-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vrdgpv
title: Occurrence Download

description: A dataset containing 6913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies beshanzuensis, Abies chensiensis, Abies delavayi, Abies fabri, Abies fargesii, Abies firma, Abies forrestii, Abies forrestii, Abies holophylla, Abies nephrolepis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6913 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018809-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbybfs
title: Occurrence Download

description: A dataset containing 32554684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "Geometry POLYGON((62.60397 70.63423,21.81457 72.89343,-2.96886 65.65834,-13.81161 53.53489,-17.94217 37.81685,4.77597 28.77135,42.98376 32.32759,62.60397 39.43026,72.9304 57.89221,72.41407 66.28898,62.60397 70.63423))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2000-2025"
 ]
}

 The dataset includes 32554684 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018771-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6e26a
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Honduras, Guatemala)",
 "TaxonKey is Artibeus"
 ]
}

 The dataset includes 4451 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018805-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jngb4a
title: Occurrence Download

description: A dataset containing 6913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abies beshanzuensis, Abies chensiensis, Abies delavayi, Abies fabri, Abies fargesii, Abies firma, Abies forrestii, Abies forrestii, Abies holophylla, Abies nephrolepis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6913 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018808-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60493/7az9d-mda09
title: Temperature-responsive bristlebots
DOI: 10.15468/dl.6z3xe3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is 3fa85f64-5717-4562-b3fc-2c963f66afa6",
 "TaxonKey is Acizzia acaciaebaileyanae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Human Observation, Material sample, Living Specimen, Observation, Occurrence evidence)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018810-250920141307145/datasets/export for details.
DOI: 10.25549/usctheses-ouc11399lqbk
title: FROM FIRE SAFETY TO BIRD SAFETY: HOW COVERED CONDUCTORS IMPACT BIRD FATALITIES
DOI: 10.15468/dl.z7mx74
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Forcipomyia cinctipes"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018811-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25549/usctheses-ouc11399lqbo
title: THE IMPACT OF BIOLOGICAL SEX AND AGING ON THE IMMUNE INNATE SYSTEM
DOI: 10.60493/r8vvk-5ma77
title: Biological and Bioinspired Autonomous Hygroscopic Materials Systems

description: My project focuses on the development of bioinspired hygroscopic materials for environmentally friendly, soft and autonomous machines. By studying the movement of hygroscopic plants such as pine cones, I can develop novel actuators that react to changes in humidity. In these actuators, I will incorporate hygroscopic polymers with restrictive layers to improve the adaptability and functionality of autonomous machines. The aim is to drive the development of applications such as adaptive shading systems for façades. In the production of this generation of actuators, I use 3D/4D printing processes.
DOI: 10.25549/usctheses-ouc11399lqbl
title: Urban Vitality or Urban Intensity: Three Essays on the Empirical Evaluation of Urban Vitality
DOI: 10.5281/zenodo.14988990
title: Enhanced-sampling MD simulations of the RAD51-BRC4 complex

description: Molecular dynamics simulations of the RAD51-BRC4 complex, using enhanced sampling methods (steered MD and metadynamics). The simulations integrate experimental information, namely SAXS (in the steered MD) and XL-MS (in the metad). All input files necessary to perform the simulations are provided, including the initial model of the full RAD51-BRC4 complex generated via AlfaFold2 after proper equilibration, used to start the steered MD, as well as the output files (including MD trajectories). In the notebook folder, we also provide a Jupyter Notebook to analyze results and perform ensemble reweighting through the maximum entropy principle; the folder also gathers all files necessary to run the notebook and a lighter version of the trajectories.

The entire output trajectory from the metad simulation, which together with the frame-by-frame weights determined via maxent represents the reweighted ensemble, can be found in the /metad/output subfolder in .xtc format. The structures can also be directly accessed in PDB format in the /reweighted_ensemble_pdb folder, each labelled with the corresponding weight in the REMARK header line. The frame-by-frame weights associated with the reconstructed conformational ensemble can be found in portable formats (both binary and human-readable) in the /notebook/output_check subfolder; the weights can also be easily recomputed and saved using dedicated instructions in the notebook. In the notebook/output_check/out_cluster_analysis subfolder we also supply representative structures, i.e. cluster centroids, for highest-weighted clusters from the reweighted ensemble in the form of individual PDBs, labelled with the corresponding cluster weight in the REMARK header line of each PDB; instructions to identify and save these structure files can also be found in the notebook.

The notebook can also be easily consulted at https://github.com/CompMedChemLab/project_saxs-xlms-md_rad
DOI: 10.5281/zenodo.17205343
title: Enhanced-sampling MD simulations of the RAD51-BRC4 complex

description: Molecular dynamics simulations of the RAD51-BRC4 complex, using enhanced sampling methods (steered MD and metadynamics). The simulations integrate experimental information, namely SAXS (in the steered MD) and XL-MS (in the metad). All input files necessary to perform the simulations are provided, including the initial model of the full RAD51-BRC4 complex generated via AlfaFold2 after proper equilibration, used to start the steered MD, as well as the output files (including MD trajectories). In the notebook folder, we also provide a Jupyter Notebook to analyze results and perform ensemble reweighting through the maximum entropy principle; the folder also gathers all files necessary to run the notebook and a lighter version of the trajectories.

The entire output trajectory from the metad simulation, which together with the frame-by-frame weights determined via maxent represents the reweighted ensemble, can be found in the /metad/output subfolder in .xtc format. The structures can also be directly accessed in PDB format in the /reweighted_ensemble_pdb folder, each labelled with the corresponding weight in the REMARK header line. The frame-by-frame weights associated with the reconstructed conformational ensemble can be found in portable formats (both binary and human-readable) in the /notebook/output_check subfolder; the weights can also be easily recomputed and saved using dedicated instructions in the notebook. In the notebook/output_check/out_cluster_analysis subfolder we also supply representative structures, i.e. cluster centroids, for highest-weighted clusters from the reweighted ensemble in the form of individual PDBs, labelled with the corresponding cluster weight in the REMARK header line of each PDB; instructions to identify and save these structure files can also be found in the notebook.

The notebook can also be easily consulted at https://github.com/CompMedChemLab/project_saxs-xlms-md_rad
DOI: 10.15468/dl.g4u46y
title: Occurrence Download

description: A dataset containing 55 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Begonia fischeri",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 55 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018812-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vmszss
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Honduras, Guatemala)",
 "TaxonKey is Artibeus"
 ]
}

 The dataset includes 4451 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018813-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ja6qfs
title: Occurrence Download

description: A dataset containing 4451 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Honduras, Guatemala)",
 "TaxonKey is Artibeus"
 ]
}

 The dataset includes 4451 records from 43 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018814-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25413/sun.30155884
title: An Economic Evaluation of the LINKEDin study: An intervention to reduce initial loss to follow-up among tuberculosis patients in South Africa

description: Tuberculosis (TB) patients who are diagnosed but not registered and initiated on TB treatment are categorised as initial loss to follow-up (ILTFU). ILTFU is a key driver of morbidity and mortality associated with TB and is a contributing factor to high TB transmission rates. LINKEDin was a quasi-experimental study which evaluated two specific interventions for reducing ILTFU in three high-TB burden provinces in South Africa. As part of LINKEDin, we undertook a micro-costing from the healthcare provider perspective using an activity-based costing approach. Cost estimates included the cost of the operation of an integrated provincial health data centre in the Western Cape, apportioned to the TB activities it supported in the province. Cost estimates were linked to intervention outcomes to understand the incremental cost of the intervention per additional patient linked to care compared to rates of ILTFU in the absence of the interventions. Sensitivity analyses were conducted to account for uncertainty in the intervention outcomes, and for periods where the implementation of the intervention was interrupted due to COVID-19 related disruptions. The primary cost driver of the interventions were staff salaries, with the cost of data extraction and in-hospital activities low relative to primary healthcare (PHC)-based follow-up activities. In the Western Cape, systematically tracking persons with TB using an automated system proved highly cost efficient compared to the more labour intense approach adopted in KwaZulu-Natal. Optimising the curation and management of data and increasing the effectiveness of tracing systems and processes can result in cost-savings.
DOI: 10.25413/sun.30155884.v1
title: An Economic Evaluation of the LINKEDin study: An intervention to reduce initial loss to follow-up among tuberculosis patients in South Africa

description: Tuberculosis (TB) patients who are diagnosed but not registered and initiated on TB treatment are categorised as initial loss to follow-up (ILTFU). ILTFU is a key driver of morbidity and mortality associated with TB and is a contributing factor to high TB transmission rates. LINKEDin was a quasi-experimental study which evaluated two specific interventions for reducing ILTFU in three high-TB burden provinces in South Africa. As part of LINKEDin, we undertook a micro-costing from the healthcare provider perspective using an activity-based costing approach. Cost estimates included the cost of the operation of an integrated provincial health data centre in the Western Cape, apportioned to the TB activities it supported in the province. Cost estimates were linked to intervention outcomes to understand the incremental cost of the intervention per additional patient linked to care compared to rates of ILTFU in the absence of the interventions. Sensitivity analyses were conducted to account for uncertainty in the intervention outcomes, and for periods where the implementation of the intervention was interrupted due to COVID-19 related disruptions. The primary cost driver of the interventions were staff salaries, with the cost of data extraction and in-hospital activities low relative to primary healthcare (PHC)-based follow-up activities. In the Western Cape, systematically tracking persons with TB using an automated system proved highly cost efficient compared to the more labour intense approach adopted in KwaZulu-Natal. Optimising the curation and management of data and increasing the effectiveness of tracing systems and processes can result in cost-savings.
DOI: 10.15468/dl.pnv7a3
title: Occurrence Download

description: A dataset containing 368 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Helice formosensis",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 368 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018816-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qf4bm3
title: Occurrence Download

description: A dataset containing 105981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-5.29508 35.98957,-4.85074 36.22889,-4.41987 36.48913,-4.13711 36.73771,-4.13711 37.06074,-4.36601 37.51068,-4.79688 37.79851,-5.14697 37.81978,-5.82021 37.62808,-6.17029 37.17884,-6.50691 36.61893,-6.3588 36.16369,-5.29508 35.98957))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 105981 records from 156 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018800-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tv33ye
title: Occurrence Download

description: A dataset containing 545 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Chionodoxa)"
 ]
}

 The dataset includes 545 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018819-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6ws9k2
title: Occurrence Download

description: A dataset containing 406 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudopaludicola canga Giaretta & Kokubum, 2003"
 ]
}

 The dataset includes 406 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0350312-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ufe7v6
title: Occurrence Download

description: A dataset containing 453 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Salvator merianae Duméril & Bibron, 1839"
 ]
}

 The dataset includes 453 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0366744-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckbfd9
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Colobosaura modesta (Reinhardt & Lütken, 1862)"
 ]
}

 The dataset includes 243 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0406293-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8pfrn
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chironius flavolineatus Jan, 1863"
 ]
}

 The dataset includes 227 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0400810-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jf5bdr
title: Occurrence Download

description: A dataset containing 541 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ameerega flavopicta (Lutz, 1925)"
 ]
}

 The dataset includes 541 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0413759-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt7myv
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Pseudoboa nigra (Duméril, Bibron & Duméril, 1854)"
 ]
}

 The dataset includes 268 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0410752-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cfbsn4
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Gonatodes eladioi Do Nascimento, Avila-Pires & Da Cunha, 1987"
 ]
}

 The dataset includes 44 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0418521-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gudszg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Norops brasiliensis (Vanzolini & Williams, 1970)"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255339-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkenee
title: Occurrence Download

description: A dataset containing 565 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Atelopus hoogmoedi Lescure, 1974"
 ]
}

 The dataset includes 565 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0255980-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9g5w9h
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dendropsophus anataliasiasi (Bokermann, 1972)"
 ]
}

 The dataset includes 51 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256019-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.arwjae
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Adenomera saci Carvalho & Giaretta, 2013"
 ]
}

 The dataset includes 49 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256033-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g6cega
title: Occurrence Download

description: A dataset containing 617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Adelphobates galactonotus (Steindachner, 1864)"
 ]
}

 The dataset includes 617 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257888-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vm62v3
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Leptodactylus paraensis Heyer, 2005"
 ]
}

 The dataset includes 210 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0257863-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.