cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11869050.v1
title: Do local environmental factors structure the trophic niche of the splash tetra, Copella arnoldi? A test in an Amazonian stream system

description: ABSTRACT Environmental variation affects the availability of spatial and trophic resources in Amazonian streams and may be important factors structuring the diet of fishes. We analyzed the diet composition and trophic niche breadth of the lebiasinid splash tetra, Copella arnoldi, aiming to evaluate how environmental variation in Amazonian streams affects the species’ trophic niche. Fish were captured and environmental factors were recorded in 20 streams in the Caxiuanã National Forest, in the eastern Amazon, in November 2010. We made a semi-quantitative analysis of stomach contents of 200 individuals. Copella arnoldi exhibited an omnivorous diet composed mainly of detritus and allochthonous invertebrates. Environmental variation (stream width, stream depth, canopy cover and flow) did not affect the diet composition or trophic niche breadth of the species, possibly due to the regional integrity of the forest within the boundaries of the protected area. Riparian cover probably minimizes the effect of the small-scale variations in food resources, thus leading to a locally homogeneous diet composition in the splash tetra C. arnoldi.
DOI: 10.6084/m9.figshare.11869053.v1
title: Sampling of cashew nuts from cashew tree clones

description: Abstract The aim of this work was to estimate sample sizes to assist the genetic improvement of the cashew tree (Anacardium occidentale L.). Stratified sampling, comprising five strata (S5, S4, S3, S2, and S1) of five cashew clones (BRS 274, BRS 275, BRS 226, BRS 189 and CCP 76), was effective for estimating the different sample sizes of the nut. Sample size for each clone depends on the weight-nut variance, the margin of error B permitted in the estimates and the desired precision of the results. The increases in sample size with clone variance, lowered the permitted margin of error B, and increased the desired precision of the results. These clones required different sample sizes for a morphological study of the nuts. Larger nuts require larger samples for the same margin of error B. For an error B of 0.2g, the sample size for clones S5, S4 and S3 were n5 = 84, n4 = 49 and n3 = 37 nuts. For clones BRS 274 (S5) and BRS 275 (S4), with better nut classification, the mean weights were respectively 16.79 and 12.78g. Clones BRS 189 (S2) and CCP 76 (S1), with smaller nuts, have a smaller variances, s22 = 0.7638 and s12 = 1.0712, where the mean weight was 8.29 and 7.81g respectively.
DOI: 10.6084/m9.figshare.11869041
title: MANGANESE IN BRAZIL: DISCOVERY, EXTRACTION, CONSUMPTION AND MARKETING FROM A HISTORICAL PERSPECTIVE

description: This work describes the occurrence and the economic importance of manganese in Brazil, covering a period of almost 130 years. After the gold cycle, manganese ores became the most important mineral commodity of Brazil’s export agenda until 1945. Brazil has one of the largest world reserves and has been among the world’s largest producers of manganese ore for over a century. The influence of international scenario on the manganese market affected its trade balance throughout the twentieth century. The Brazilian manganese ore production was strongly stimulated by external events (such as the I and II World Wars) and the development of the US and the European steel industries in the early XXth century. However, internal consumption increased as the Brazilian steel industry developed. The chief use of manganese in Brazil and in the world is in the steel production. Nonmetallurgical uses include battery cathodes, fertilizers, animal feed, water treatment, analytical chemistry (permanganometry), pigments, cosmetics and glasses. The perspectives for manganese in Brazil in the future are encouraging, but it is necessary to search for new deposits and develop processing of tailings and low grade ores.
DOI: 10.6084/m9.figshare.11869044
title: Ichthyofauna from tributaries of Urubu and Amazonas rivers, Amazonas State, Brazil

description: Abstract: The Amazonas River basin comprises the world’s highest fish species diversity. Anthropogenic interferences in aquatic environments represent a pressure over the maintenance of ecological stability and biodiversity. We inventoried the ichthyofauna of 13 disturbed/modified tributaries of Urubu and Amazonas rivers in the region of the middle Amazon River, between June 2018 and March 2019. A total of 164 species were captured, represented by 11 orders, 37 families and 96 genera. Characiformes was the richest order, followed by Cichliformes and Siluriformes. The most representative families in number of species were Cichlidae, Serrasalmidae, and Characidae. Hemigrammus levis was the most abundant species, and Acarichthys heckelii the most common, registered in all sampled sites. In the present study, species with economic interest were collected, as well as many species recently described and one still waiting for formal description, identified provisionally as Moenkhausia aff. colletii. Therefore, the high fish diversity registered, even in disturbed environments in Middle Amazonas River, denotes the makeable ecological importance of this region for fishes resources and supports the necessity of evaluation of other aquatic environments in the region, as well as the potential impacts on composition, maintenance, and survival of ichthyofauna in environments directly affected by human activities.
DOI: 10.6084/m9.figshare.11869044.v1
title: Ichthyofauna from tributaries of Urubu and Amazonas rivers, Amazonas State, Brazil

description: Abstract: The Amazonas River basin comprises the world’s highest fish species diversity. Anthropogenic interferences in aquatic environments represent a pressure over the maintenance of ecological stability and biodiversity. We inventoried the ichthyofauna of 13 disturbed/modified tributaries of Urubu and Amazonas rivers in the region of the middle Amazon River, between June 2018 and March 2019. A total of 164 species were captured, represented by 11 orders, 37 families and 96 genera. Characiformes was the richest order, followed by Cichliformes and Siluriformes. The most representative families in number of species were Cichlidae, Serrasalmidae, and Characidae. Hemigrammus levis was the most abundant species, and Acarichthys heckelii the most common, registered in all sampled sites. In the present study, species with economic interest were collected, as well as many species recently described and one still waiting for formal description, identified provisionally as Moenkhausia aff. colletii. Therefore, the high fish diversity registered, even in disturbed environments in Middle Amazonas River, denotes the makeable ecological importance of this region for fishes resources and supports the necessity of evaluation of other aquatic environments in the region, as well as the potential impacts on composition, maintenance, and survival of ichthyofauna in environments directly affected by human activities.
DOI: 10.6084/m9.figshare.11869041.v1
title: MANGANESE IN BRAZIL: DISCOVERY, EXTRACTION, CONSUMPTION AND MARKETING FROM A HISTORICAL PERSPECTIVE

description: This work describes the occurrence and the economic importance of manganese in Brazil, covering a period of almost 130 years. After the gold cycle, manganese ores became the most important mineral commodity of Brazil’s export agenda until 1945. Brazil has one of the largest world reserves and has been among the world’s largest producers of manganese ore for over a century. The influence of international scenario on the manganese market affected its trade balance throughout the twentieth century. The Brazilian manganese ore production was strongly stimulated by external events (such as the I and II World Wars) and the development of the US and the European steel industries in the early XXth century. However, internal consumption increased as the Brazilian steel industry developed. The chief use of manganese in Brazil and in the world is in the steel production. Nonmetallurgical uses include battery cathodes, fertilizers, animal feed, water treatment, analytical chemistry (permanganometry), pigments, cosmetics and glasses. The perspectives for manganese in Brazil in the future are encouraging, but it is necessary to search for new deposits and develop processing of tailings and low grade ores.
DOI: 10.6084/m9.figshare.11869032
title: Profile and generalist physician knowledge about neurology in emergency department: headache management

description: Abstract Background: Neurological complaints are frequent in emergency department routine. Among them, headache is a common disorder, which requires a certain degree of knowledge on Neurology because of its extensive differential diagnosis. Objective: To assess general practice physicians’ level of knowledge about headaches, in addition to outlining the profile of professionals who attend in emergency departments, as well as the profile of their respective workplaces in terms of neurological approach. Methods: We included in evaluation physicians who attend emergency care units for adult public as general practitioners. A questionnaire was applied with questions regarding participants’ general knowledge on headache, neurological approach, demographic profile, and workplace profile. Results: 159 physicians answered the questionnaire. The professionals’ profile corresponded to recently graduated individuals (mean of 6.31 years). Knowledge about headache management was regular. Those who do not have any specialization or are not majoring a specialization were statistically significantly more confident in neurological patients care (p=0.006). Only 18.24% reported access to Magnetic Resonance Imaging and 35.85% had no access to any type of neuroimaging. Conclusions: General practice physicians often do not feel confident when performing neurological exams, demonstrating low knowledge about the topic. The profile of professionals working in these departments is predominantly of newly graduates, which may affect in some way on care quality. There was also a lack of structure for adequate care.
DOI: 10.6084/m9.figshare.11869032.v1
title: Profile and generalist physician knowledge about neurology in emergency department: headache management

description: Abstract Background: Neurological complaints are frequent in emergency department routine. Among them, headache is a common disorder, which requires a certain degree of knowledge on Neurology because of its extensive differential diagnosis. Objective: To assess general practice physicians’ level of knowledge about headaches, in addition to outlining the profile of professionals who attend in emergency departments, as well as the profile of their respective workplaces in terms of neurological approach. Methods: We included in evaluation physicians who attend emergency care units for adult public as general practitioners. A questionnaire was applied with questions regarding participants’ general knowledge on headache, neurological approach, demographic profile, and workplace profile. Results: 159 physicians answered the questionnaire. The professionals’ profile corresponded to recently graduated individuals (mean of 6.31 years). Knowledge about headache management was regular. Those who do not have any specialization or are not majoring a specialization were statistically significantly more confident in neurological patients care (p=0.006). Only 18.24% reported access to Magnetic Resonance Imaging and 35.85% had no access to any type of neuroimaging. Conclusions: General practice physicians often do not feel confident when performing neurological exams, demonstrating low knowledge about the topic. The profile of professionals working in these departments is predominantly of newly graduates, which may affect in some way on care quality. There was also a lack of structure for adequate care.
DOI: 10.6084/m9.figshare.11868969
title: Timestamp Repair for Business Process Event Logs

description: This zip contains the experimental data and the implementation of the approach discussed in the research article titled:<br>"Timestamp Repair for Business Process Event Logs"R. Conforti, M. La Rosa, A.H.M. ter Hofstede, A. Augusto<br>Precisely, the zip contains:1. the commandline Java application implementing the proposed approach;2. the artificial and real-life data used in the experiments; and3. the experiments results.
DOI: 10.6084/m9.figshare.11868978
title: Evaluation of genomic breeding value and heritabilities for body conformation traits in Korean Holstein cattle

description: This study was aimed to predict the accuracy of GEBVs and heritabilities for the twenty five (25) body conformation traits in Korean Holstein dairy cattle using GBLUP method. For the analysis, phenotypic data of 25 linear body conformation traits were collected from 2206 no. of Korean Holstein population and all animals were genotyped using 54K Illumina bovine SNP chip.
DOI: 10.6084/m9.figshare.11868978.v1
title: Evaluation of genomic breeding value and heritabilities for body conformation traits in Korean Holstein cattle

description: This study was aimed to predict the accuracy of GEBVs and heritabilities for the twenty five (25) body conformation traits in Korean Holstein dairy cattle using GBLUP method. For the analysis, phenotypic data of 25 linear body conformation traits were collected from 2206 no. of Korean Holstein population and all animals were genotyped using 54K Illumina bovine SNP chip.
DOI: 10.6084/m9.figshare.11868954
title: Suppl. Table 3

description: Body weight and serum analysis in normal and HSD mice at 20 weeks
DOI: 10.6084/m9.figshare.11868951
title: Suppl. Table 2

description: The composition of fasting serum NEFAs profile in normal and HSD mice at 20 weeks
DOI: 10.6084/m9.figshare.11868954.v1
title: Suppl. Table 3

description: Body weight and serum analysis in normal and HSD mice at 20 weeks
DOI: 10.6084/m9.figshare.11868936
title: Suppl. Table 1

description: Suppl. Table 1 The composition of the diet for mice
DOI: 10.6084/m9.figshare.11868951.v1
title: Suppl. Table 2

description: The composition of fasting serum NEFAs profile in normal and HSD mice at 20 weeks
DOI: 10.6084/m9.figshare.11868936.v2
title: Suppl. Table 1

description: Suppl. Table 1 The composition of the diet for mice
DOI: 10.6084/m9.figshare.11868936.v1
title: Suppl. Table 1

description: Suppl. Table 1 The composition of the diet for mice
DOI: 10.17608/k6.auckland.11868675
title: Antimicrobial testing of the endophytic fungus Neofusicoccum australe

description: The ascomycete fungus <i>Neofusicoccum australe</i> (ICMP 21498) was isolated from diseased grapevines in Aotearoa New Zealand. Forty-two Potato Dextrose Agar plates were inoculated with ICMP 21498 and incubated at room temperature for 3 weeks. Fully grown fungal plates were freeze-dried (23.74 g, dry weight) and extracted with MeOH (2 x 800 mL) for 4 hours followed CH<sub>2</sub>Cl<sub>2</sub> (800 mL) overnight. Combined organic extracts were concentrated under reduced pressure to afford an orange oil (1.69 g). The crude product was subjected to C8 reversed-phase column chromatography eluting with a gradient of H<sub>2</sub>O/MeOH to afford five fractions (F1–F5). Following extraction and fractionation, broth microdilution testing of the extracts was performed to ascertain the antimicrobial activity of each of the fractions against <i>Staphylococcus aureus</i> ATCC 29213 and <i>Escherichia coli</i> ATCC 25922. Tests were performed in a clear, flat bottom 96 well plate (Thermo Fisher, NUN167008) and bacterial growth determined within each well by measuring absorbance at 600 nm using an Enspire plate reader (Perkin Elmer). Extracts were obtained as dried samples which were dissolved in DMSO to make a 25 mg/mL solution and then further diluted into Mueller Hinton broth II (MHB) (Becton Dickinson, 212322) to achieve a maximum concentration of 2 mg/mL. Each extract (200 µL) was added to two adjacent wells along the top of the 96-well plate. MHB (100 µL) was then added to the remaining wells and extract solution (100 µL) serially diluted two-fold down the plate and discarded, leaving the last row as a growth control. Aliquots of bacteria at an optical density at 600 nm of 0.01 (approximately 1 x 10<sup>6</sup> colony forming units [CFU]/mL) were then added to all the wells. This gave a maximum concentration of 1 mg/mL and a minimum concentration of 16 µg/mL. An additional plate contained a sterile control row and a negative control well containing DMSO. The maximum volume/volume concentration of DMSO in all extracts was 4%, therefore the negative control was tested at an identical concentration. Plates were incubated at 37 °C with shaking at 100 rpm and absorbance was measured at various time points. <br>
DOI: 10.6084/m9.figshare.11868639
title: CusRS data files and computer codes

description: Supplementary raw data and computer analysis codes for the manuscript: "Metal-induced sensor mobilization turns on affinity to activate regulator for metal detoxification in live bacteria"Authors: Bing Fu, Kushal Sengupta, Lauren Alexa Genova, Ace George Santiago, Won Jung, Lukasz Krzeminski, Udit Kumar Chakraborty, Wenyao Zhang, Peng Chen<br><br>Raw data include before and after ITCDD correction for each strain under both Cu conditions. They are in multidimensional MATLAB matrix format.<br>MATLAB codes are for generating ITCDD matrix and ITCDD transformation.<br>More details are described in readme files.<br>
DOI: 10.6084/m9.figshare.11868612
title: Legionella species 16S rRNA gene classification custom reference database

description: A custom reference database for Legionella species 16S rRNA gene classification. <br>The database was built by compiling 16S rRNA gene sequences of Legionella species type strain collected from NCBI, following the list of currently described Legionella species (http://www.bacterio.net).<br><br>The database is formatted as custom reference database for use in QIIME 1.9.1.<br>
DOI: 10.6084/m9.figshare.11868612.v1
title: Legionella species 16S rRNA gene classification custom reference database

description: A custom reference database for Legionella species 16S rRNA gene classification. <br>The database was built by compiling 16S rRNA gene sequences of Legionella species type strain collected from NCBI, following the list of currently described Legionella species (http://www.bacterio.net).<br><br>The database is formatted as custom reference database for use in QIIME 1.9.1.<br>
DOI: 10.6084/m9.figshare.11868372
title: Chippewa fecal source characterization

description: Summary of fecal source characterization data.
DOI: 10.6084/m9.figshare.11868375
title: Tye fecal source characterization

description: Summary of fecal source characterization data for the Tye watershed
DOI: 10.6084/m9.figshare.11868372.v1
title: Chippewa fecal source characterization

description: Summary of fecal source characterization data.
DOI: 10.6084/m9.figshare.11868375.v1
title: Tye fecal source characterization

description: Summary of fecal source characterization data for the Tye watershed
DOI: 10.6084/m9.figshare.11868357
title: Experiment 2 Data

description: This study examined whether the McGurk Illusion is due to visual dominance or audiovisual fusion.
DOI: 10.6084/m9.figshare.11868225
title: NEON Teaching Data: Hyperspectral tutorial series example RGB image stack

description: This file is an example dataset from the National Ecological Observatory Network (NEON) Aerial Observation Platform (AOP) hyperspectral imaging spectrometer. In particular, this is a three-band image stack saved as a TIF. The three bands saved here are from the blue, green, and red wavelengths of the AOP imaging spectrometer data. This image may be easily displayed as a nearly-'true color' image in open-source and commercially-available imagery and geoinformation (GIS) software. <br>This stack is derived from a single 1km^2 National Ecological Observatory Network (NEON) Airborne Observation Platform (AOP) hyperspectral imaging spectrometer data from the San Joaquin Experimental Range in California, USA (“NEON_D17_SJER_DP3_257000_4112000_reflectance.h5” from March 2019).<br><br>Citation - these data were derived from:National Ecological Observatory Network. 2020. Data Product DP3.30006.001, Spectrometer orthorectified surface directional reflectance - mosaic. Provisional data downloaded from http://data.neonscience.org on February 21, 2020. Battelle, Boulder, CO, USA NEON. 2020.
DOI: 10.6084/m9.figshare.11868225.v1
title: NEON Teaching Data: Hyperspectral tutorial series example RGB image stack

description: This file is an example dataset from the National Ecological Observatory Network (NEON) Aerial Observation Platform (AOP) hyperspectral imaging spectrometer. In particular, this is a three-band image stack saved as a TIF. The three bands saved here are from the blue, green, and red wavelengths of the AOP imaging spectrometer data. This image may be easily displayed as a nearly-'true color' image in open-source and commercially-available imagery and geoinformation (GIS) software. <br>This stack is derived from a single 1km^2 National Ecological Observatory Network (NEON) Airborne Observation Platform (AOP) hyperspectral imaging spectrometer data from the San Joaquin Experimental Range in California, USA (“NEON_D17_SJER_DP3_257000_4112000_reflectance.h5” from March 2019).<br><br>Citation - these data were derived from:National Ecological Observatory Network. 2020. Data Product DP3.30006.001, Spectrometer orthorectified surface directional reflectance - mosaic. Provisional data downloaded from http://data.neonscience.org on February 21, 2020. Battelle, Boulder, CO, USA NEON. 2020.
DOI: 10.6084/m9.figshare.11868150
title: Experiment 1 Data

description: This study examined whether the McGurk Illusion is due to visual dominance or audiovisual fusion.
DOI: 10.6084/m9.figshare.11868186
title: NEON Teaching Data: Hyperspectral tutorial series example dataset

description: This is an HDF5 file that is a subset of a single 1km^2 National Ecological Observatory Network (NEON) Airborne Observation Platform (AOP) hyperspectral imaging spectrometer data from the San Joaquin Experimental Range in California, USA (“NEON_D17_SJER_DP3_257000_4112000_reflectance.h5” from March 2019). This subset was created in order to reduce file size from the original tile's ~650Mb to this file which is ~50Mb. In order to make such a substantial reduction in size, this file contains imagery for an area that is 500mX500m and has a reduced spectral resolution of 107 bands rather than the original 426 bands of imagery (every fourth band is selected; bands are not averaged). This file also has reduced metadata, retaining only what is necessary for training purposes. We suggest that this file only be used for the NEON tutorials (or other educational purposes where file size and/or processing power may be a limitation), and that scientific researchers obtain the original HDF5 files from data.neonscience.org<br>Citation - these data were derived from:National Ecological Observatory Network. 2020. Data Product DP3.30006.001, Spectrometer orthorectified surface directional reflectance - mosaic. Provisional data downloaded from http://data.neonscience.org on February 21, 2020. Battelle, Boulder, CO, USA NEON. 2020.
DOI: 10.6084/m9.figshare.11867886
title: Rab5 Example Dataset – QuantEscape

description: QuantEscape is a MATLAB App and toolkit for quantification of endosomal escape and damage from live-cell fluorescence microscopy images.<br><br>The file contains fluorescence microscopy images of HeLa cells expressing the membrane damage sensor galectin-9, and the endosome marker Rab5. Images are provided as an example dataset for demonstration of the QuantEscape quantification tools for endosomal escape and damage.<br><b><i>Dataset description</i></b><b>Channel 1 (c1): </b>YFP-galectin-9<b>Channel 2 (c2): </b>mCherry-Rab5<b><i>x</i> Dimension:</b> 512 px<b><i>y</i> Dimension:</b> 512 px<b><i>z</i> Dimension:</b> 10 planes<b><i>t</i> Dimension:</b> 250 frames (<i>dt</i> = 3.2 s)<b>Image format:</b> 16-bit tif