cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3629309_d1
title: Additional file 1: Figure S1. of Impact of the front-of-pack 5-colour nutrition label (5-CNL) on the nutritional quality of purchases: an experimental study

description: (FSA score computation and 5-CNL attribution) and Supplemental material (communication leaflet). (ZIP 464 kb)
DOI: 10.6084/m9.figshare.c.3629222_d1
title: Additional file 2: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

description: Table S1. Summary information of sources and co-ancestral membership of 1857 accessions Table S2. GWAS results of flowering time related traits and relevant linked QTL or genes. Table S3. Genomic regions with DEST of more than 0.2 and relevant linked QTL. (XLSX 299 kb)
DOI: 10.6084/m9.figshare.c.3629222_d2
title: Additional file 1: of Analysis of genetic differentiation and genomic variation to reveal potential regions of importance during maize improvement

description: Figure S1. Correlation analysis of the first five principal components (PCs) between specific subset with different marker size and the entire set with all markers. Figure S2. Pair-comparison of DEST on different chromosomes between the subpopulations. Figure S3. Summary statistic of flowering time related traits. Histograms show the distribution of flowering time related traits. Numbers in the up-right triangle are the Pearson coefficient between flowering time related traits and between environments for the same trait. The low-left triangle is the scatter plots between flowering time related traits and between environments for the same trait. Figure S4. Comparison of the genetic variation evaluated by using two datasets including 43,252 and 85 SNPs, respectively. Each scatter presents one accession. Black line is the fitted of all scatters. (ZIP 850 kb)
DOI: 10.6084/m9.figshare.c.3629159_d5
title: Additional file 7: Table S3. of Complete depletion of primordial germ cells in an All-female fish leads to Sex-biased gene expression alteration and sterile All-male occurrence

description: DEGs between mature testis and ovary. (XLSX 3580Â kb)
DOI: 10.15468/dl.kkyjr5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudotolithus mitsukurii Jordan & Snyder, 1900",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032149-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3629057_d5
title: Additional file 6 of In-silico discovery of cancer-specific peptide-HLA complexes for targeted therapy

description: 627 peptide-HLA targets prioritized by the number of associated off-targets. (XLSX 79 kb)
DOI: 10.15468/dl.qv6377
title: Occurrence Download

description: A dataset containing 78812 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "PublishingOrg is one of (eac88d99-9f6c-4031-8fc4-8088f0e0dfe7)",
 "StateProvince is one of (cundinamarca)"
 ]
 }
 ]
}

 The dataset includes 78812 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032148-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628844_d3
title: Additional file 4: of MiR-106b induces cell radioresistance via the PTEN/PI3K/AKT pathways and p21 in colorectal cancer

description: Construction of luciferase reporter vectors.
DOI: 10.6084/m9.figshare.c.3628847_d1
title: Additional file 7: of Emergence of nontoxic mutants as revealed by single filament analysis in bloom-forming cyanobacteria of the genus Planktothrix

description: Occurrence of mutations in individual Planktothrix filaments (Excel spreadsheet). (XLSX 74Â kb)
DOI: 10.6084/m9.figshare.c.3628799_d5
title: Additional file 3: Table S5. of A de novo silencer causes elimination of MITF-M expression and profound hearing loss in pigs

description: SNPs detected by re-sequencing in the associated region of Rongchang pigs. Table S6. SNPs co-segregated with hearing loss phenotype in three MITFâ   r/r pigs and three MITFâ   R/R Rongchang pigs. Table S7. SNPs uniquely detected in Rongchang pigs, and homozygous in MITFâ   r/r . (XLSX 465 kb)
DOI: 10.6084/m9.figshare.c.3628784_d9
title: Additional file 7: Table S3. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

description: Table of positively enriched gene sets. (XLSB 188Â kb)
DOI: 10.6084/m9.figshare.c.3628784_d8
title: Additional file 5: Table S1. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

description: Primers used for quantitative real-time PCR validation of differentially expressed genes. (XLSX 54Â kb)
DOI: 10.6084/m9.figshare.c.3628784_d7
title: Additional file 8: Table S4. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

description: Detailed tables for the top 20 negatively and positively enriched gene sets, sorted in order of decreasing absolute fold change. (XLS 308Â kb)
DOI: 10.6084/m9.figshare.c.3628799_d3
title: Additional file 5: of A de novo silencer causes elimination of MITF-M expression and profound hearing loss in pigs

description: Supporting data. 1 Data of ABR tests (pigs). 2 Data of EP. 3 Data of K+ concentration. 4 Data of Mitf exon fold change. 5 Data of reporter assay. 6 Data of ABR tests (mice). 7 Data of mouse Mitf qPCR (Ct). 8 Data of mouse Mitf qPCR (FC). (XLSX 27 kb)
DOI: 10.6084/m9.figshare.c.3628784_d5
title: Additional file 6: Table S2. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

description: Table of negatively enriched gene sets. (XLSB 195Â kb)
DOI: 10.6084/m9.figshare.c.3628784_d3
title: Additional file 9: Table S5. of Human induced pluripotent stem cell derived neurons as a model for Williams-Beuren syndrome

description: Table of differentially expressed genes used for ranking genes for GSEA. (XLS 4906Â kb)
DOI: 10.6084/m9.figshare.c.3628682_d1
title: Additional file 6: of Numerous genetic loci identified for drought tolerance in the maize nested association mapping populations

description: Joint linkage analysis summary for the seven drought-related traits under the WW and WS conditions in the US-NAM population. (XLSX 79Â kb)
DOI: 10.6084/m9.figshare.c.3628607_d9
title: Additional file 2: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: List of differentially expressed genes encoding growth factors/ligands and factors associated with angiogenesis and apoptosis. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3628607_d8
title: Additional file 6: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Genes differentially expressed during early stages of liver compensatory growth in both mice and female zebrafish. Livers of hepatectomized old or young fish vs. age-matched controls were analyzed at indicated time points. Data are expressed as Fold Difference (FD) vs. untreated young or adult (control) livers, respectively. Differentially expressed genes were selected with DiffScore cutoff ≥20 or ≤ −20, a q-value of 0.01 and fold-differences cutoff ±2. NS: gene expression with DiffScore cutoff ≥ −20 or ≤20. (XLSX 94 kb)
DOI: 10.6084/m9.figshare.c.3628607_d5
title: Additional file 5: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Enriched pathways for genes differentially expressed during the liver compensatory growth. (XLSX 76 kb)
DOI: 10.6084/m9.figshare.c.3628607_d6
title: Additional file 1: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Genes differentially expressed during the liver compensatory growth and expression profile clustering of these genes. (XLSX 311 kb)
DOI: 10.6084/m9.figshare.c.3628607_d3
title: Additional file 7: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Enriched GO terms for genes differentially expressed during early stages of liver compensatory growth both in mice and female zebrafish. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.c.3628607_d4
title: Additional file 3: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Validation of RNA-seq data with qPCR. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3628607_d2
title: Additional file 9: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Primers used for qPCR. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3628607_d1
title: Additional file 4: of Transcriptomic characterization of the dorsal lobes after hepatectomy of the ventral lobe in zebrafish

description: Enriched GO terms for genes differentially expressed during the liver compensatory growth. (XLSX 72 kb)
DOI: 10.6084/m9.figshare.c.3628532_d7
title: MOESM6 of A new regulatory mechanism controlling carotenogenesis in the fungus Mucor circinelloides as a target to generate β-carotene over-producing strains by genetic engineering

description: Additional file 6: Table S4. Indels identified in the genomes of carotenogenic mutants.
DOI: 10.6084/m9.figshare.c.3628532_d3
title: MOESM4 of A new regulatory mechanism controlling carotenogenesis in the fungus Mucor circinelloides as a target to generate β-carotene over-producing strains by genetic engineering

description: Additional file 4: Table S2. Summary of SNPs identified in the genomes of carotenogenic mutants.
DOI: 10.15468/dl.5jw4ny
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phocoena phocoena (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 369 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032152-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628343_d2
title: Additional file 2: of An ensemble framework for identifying essential proteins

description: Table S5-S6. The information of the top 100 proteins ranked by five centrality measures and by five ensemble methods on PIN24K. Table S7-S8. The information of the top 100 proteins ranked by five centrality measures and by five ensemble methods on PIN76K. (XLSX 64 kb)
DOI: 10.15468/dl.egzr3e
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pithecia vanzolinii Hershkovitz, 1987"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032154-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3628292_d9
title: Additional file 1: of Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress

description: Characteristics of sesame AP2/ERF Transcription factor gene family members. This table contains the type, distribution of AP2 domains, protein full length, subfamily, ORF length, number of CDS, lists of predicted domains. (XLSX 43 kb)
DOI: 10.6084/m9.figshare.c.3628292_d6
title: Additional file 9: of Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress

description: List of primers used in quantitative real time- PCR analysis. (XLSX 12 kb)
DOI: 10.6084/m9.figshare.c.3628292_d1
title: Additional file 4: of Insight into the AP2/ERF transcription factor superfamily in sesame and expression profiling of DREB subfamily under drought stress

description: Details of sesame AP2/ERF transcription factor- based SSR markers. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3628229_d6
title: MOESM4 of Genome-wide identification and evaluation of constitutive promoters in streptomycetes

description: Additional file 4: Dataset S3. Genes with highly stable expression profiles in different conditions generated by step-by-step analysis.
DOI: 10.6084/m9.figshare.c.3628028_d12
title: Additional file 2: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: The complete list of differentially expressed genes (DEGs) in different clusters in rice genotypes at different water-deficits (clusters I -VIII). From a to h:10: IR77298-14-1-2-B tolerant NIL, i.e., IR77298-14-1-2-B-10; 13: IR77298-14-1-2-B susceptible NIL, i.e., IR77298-14-1-2-B-13; 18: IR77298-5-6-B tolerant NIL, i.e., IR77298-5-6-B-18; 11: IR77298-5-6-B susceptible NIL, i.e., IR77298-5-6-B-11; 0.2 and 0.5 FTSW are severe and mild water-deficit treatments; blank cell: no change in gene expression. (XLSX 1219Â kb)
DOI: 10.6084/m9.figshare.c.3628028_d13
title: Additional file 10: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: Different genes involved in ABA and calcium signaling in leaf tissue of rice NILs and the parent IR64 under different water-deficit treatments. 1: up-regulated; -1: down-regulated; blank: no change in expression; 10: IR77298-14-1-2-B tolerant NIL, i.e., IR77298-14-1-2-B-10; 13: IR77298-14-1-2-B susceptible NIL, i.e., IR77298-14-1-2-B-13; 18: IR77298-5-6-B tolerant NIL, i.e., IR77298-5-6-B-18; 11: IR77298-5-6-B susceptible NIL, i.e., IR77298-5-6-B-11; 0.2 and 0.5 FTSW are severe and mild water-deficit treatments (XLSX 46Â kb)
DOI: 10.6084/m9.figshare.11354114
title: Supplemental Electropherogram Data; Front End Differentiation with Hormone specific antibody probes

description: Dataset includes electropherogram data accompanying manuscript submission for study focused on front-end labeling and separation of contributor cell populations in touch/trace DNA mixtures.<br>
DOI: 10.6084/m9.figshare.c.3628028_d11
title: Additional file 5: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: GO analysis of the down-regulated differentially expressed common genes in the leaves of the rice genotypes, including the two pairs of NILs and their drought-susceptible parent in response to different WD treatments. This figure shows a colorful model of the PAGE analysis of gene-expression data under the different WD treatments applied in this study. The information includes the following: GO term, ontology (including 3 GO categories: biological process (P), molecular function (F) and cellular component (C)), the number of annotated genes for each GO term, the GO description, a simple colorful model in which the red color system indicates up-regulation and the blue color indicates down-regulation, and different statistical parameters, such as z-scores, means and adjusted P values (FDR) in the different rice genotypes. (XLSX 1665Â kb)
DOI: 10.6084/m9.figshare.c.3628028_d10
title: Additional file 13: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: List of regulatory motifs in the promoters of the differentially expressed specific genes and their corresponding binding transcription factors in the two drought-tolerant rice NILs under mild and severe water-deficit treatments. Motif: examined sequences. Matching to: description from the built-in list of known plant cis-elements, to which the examined motif matches. ATCIS Info: ATCIS record of AGRIS DB, in which the sequence is (partially) matched to the examined motif. Lift and Confidence: index of association rule analysis. Corresponding TUs: transcription units in which the corresponding region contained the examined motif. (XLSX 119Â kb)
DOI: 10.15468/dl.swuxxu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Delphinus phocoena Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032156-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3628055_d1
title: Additional file 1: Table S1. of MicroRNA profiles reveal female allotetraploid hybrid fertility

description: Data statistics of samples. Table S2. Classify annotation of clean reads. Table S3. Actual reads counts of miRNAs in different samples derived from sequencing. Table S4. Statistic of correlation by pairing comparision. Table S5. Differential expressed miRNAs and change fold. Table S6. Function annotation and classification of genes targeted by differential expressed miRNAs. Table S7. Function classfication of targeted genes of differential expressed miRNAs with KEGG pathway database. (XLS 248Â kb)
DOI: 10.6084/m9.figshare.c.3628028_d7
title: Additional file 7: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: All GO classifications and the significant GO terms of up- and down-regulated differentially expressed specific genes in IR77298-5-6-B-18 in different water-deficit treatments. C: Cellular Components, F: Molecular Functions, P: Biological Process (XLSX 42Â kb)
DOI: 10.17632/3w327r5br8.1
title: BIG-600K (Part 3)

description: Paper: BRIDGE: A Multi-organ Foundation Model for Bridging Histology Images to Spatial Transcriptomics
Authors: Zhuo Liang , Weiqin Zhao , Fuying Wang , Guangyong Chen , Yuanhua Huang , Lequan Yu
DOI: 10.17632/74298ygyg8.1
title: Supplementary Material – Restricted Repetitive Behaviors in Adolescent Males with Autism: Volatility in Brain Functional Connectivities

description: See description file.
DOI: 10.6084/m9.figshare.c.3628028_d5
title: Additional file 3: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: Putative drought-responsive genes, including all significant differentially expressed common genes (DECGs), in the two pairs of NILs and the rice parent IR64 under different water-deficit treatments. (XLSX 111Â kb)
DOI: 10.17632/74298ygyg8.2
title: Supplementary Material – Restricted Repetitive Behaviors in Adolescent Males with Autism: Volatility in Brain Functional Connectivities

description: This dataset comprises all output data (Matlab R2018b workspace - details in 'Dataset Description File.pdf') and supplementary material for a study on subtypes of restricted, repetitive and stereotypical behaviors (RRBs) in adolescent males with autism spectrum disorder (ASD), from the viewpoint of the dynamics of brain functional connectivities (FCs). 

The study uses data from the ABIDE-II repository and Repetitive Behavior Scale-Revised (RBS-R) metrics, to form two ASD groups with tightly controlled demographics; one comprises subjects with scores above threshold for the self-injurious behaviors (SIBs) subscale, and the other subjects with scores below threshold for SIBs, but above threshold for at least one of the other subscales (stereotyped, compulsive, ritualistic, insistence on sameness, restricted interests). The dynamics of the coherence for FCs across distinct frequency bands are compared against matched controls, using a novel volatility measure computed in time-frequency space. We find statistically significant differences, on average, in the volatility of a relatively small set of FCs, most mapping to either the default mode network or the cerebellum, in the mid- and high-frequency bands, and yielding higher volatility in subjects with high levels of SIBs. Results suggest a distinct underlying profile for SIBs involving multiple brain regions associated with rewards and emotions processing. The work contributes to the identification of neural substrates potentially underlying behavioral subtypes, and may help target interventions.
DOI: 10.6084/m9.figshare.c.3628028_d4
title: Additional file 4: of Transcriptional profiling of the leaves of near-isogenic rice lines with contrasting drought tolerance at the reproductive stage in response to water deficit

description: GO analysis of up-regulated differentially expressed common genes in the leaves of the rice genotypes including the two pairs of NILs and their drought-susceptible parent in response to different WD treatments. This figure shows a colorful model of the PAGE analysis generated using agriGO, a web-based gene ontology tool of gene-expression data under the different WD treatments (0.2 and 0.5 FTSW) used in this study. In the figure, the information includes the following: GO term, ontology (including three GO categories: biological process (P), molecular function (F) and cellular component (C)), the number of annotated genes for each GO term, the GO description, a simple colorful model in which the red color system indicates up-regulation and the blue color indicates down-regulation, and different statistical parameters such as z-scores, means and adjusted P values (FDR) in the different rice genotypes. (XLSX 1517Â kb)
DOI: 10.15468/dl.52gdsk
title: Occurrence Download

description: A dataset containing 60751 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Corvus corax Linnaeus, 1758"
 ]
}

 The dataset includes 60751 records from 88 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032155-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/7gcvb8hb83.1
title: Tensile strength of provisional zinc oxide cement reinforced with 23% ethanolic propolis extract in upper premolar teeth, at the Universidad Nacional Pedro Henríquez Ureña, May-August 2023 period. In vitro study

description: Introduction.
The study investigated the tensile strength of temporary zinc oxide cement reinforced with 23% ethanolic extract of propolis in upper premolars.
Hypothesis Formulation
Propolis extract 23% binds to zinc oxide temporary cement without significantly altering the tensile strength properties.
Results
Group A showed a tensile strength of 12.3 ± 6.5 MPa and a maximum load of 118 ± 58N. Group B showed a resistance of 15.9 ± 3.2 MPa and a maximum load of 134 ± 47N. No statistically significant differences (P&gt;0.05) were found between the groups according to the Wilcoxon test.
Conclusions
The addition of 23% ethanolic extract of propolis to zinc oxide temporary cement does not significantly modify the tensile properties.
DOI: 10.15468/wcpwux
title: Ukrainian calcareous vegetation of western and south-western Ukraine

description: The dataset includes records of 317 species of vascular plants and cryptogam species of the Chernivtsi, Ivano-Frankivsk, Khmel'nytskyi, Odessa and Vinnytsia administrative regions of Ukraine. These species (mainly vascular plants, succulents, graminoids, mosses and lichens) occur on calcareous bedrocks of Western, Central, and South Ukraine.