cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3616514_d7
title: Additional file 9: of Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

description: Gene expression levels for genes corresponding to proteins listed in Fig.  5. The table represents expression values of genes, corresponding to proteins listed in Fig. 5. Data for cv. Désirée (NT) and NahG-Désirée (NahG) plants are shown. Potato genome sequencing consortium (PGSC) protein identifiers [80] and ITAG potato annotations were linked to Potato Oligo Chip Initiative (POCI) identifiers [64] for comparisons between protein and gene expression obtained with microarrays. As different POCI sequences can represent the same gene, allelic variants or closely related gene family multiple hits were often retrieved for single proteins in this database. Protein expression is thus linked to multiple results of microarray analysis. On the other hand it is also possible that some of the proteins no corresponding microarray probe have been identified. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3616538_d3
title: MOESM2 of Real-time urinary electrolyte monitoring after furosemide administration in surgical ICU patients with normal renal function

description: Additional file 2. Dataset of long-term group.
DOI: 10.6084/m9.figshare.c.3616514_d9
title: Additional file 3: of Bimodal dynamics of primary metabolism-related responses in tolerant potato-Potato virus Y interaction

description: Primary metabolism-related gene expression changes following PVY NTN infection in cv. Désirée (NT) and NahG-Désirée (NahG). Differentially expressed genes in virus versus mock treated plants of cv. Désirée and NahG-Désirée at 1, 3, 4, 5 and 7 dpi are shown. Genes are represented for four selected functional groups (MapMan ontology BINs: photosynthesis [1], major carbohydrate metabolism [2], minor CHO metabolism [3] and glycolysis [4]. Only expression values of statistically significantly (FDR p
DOI: 10.6084/m9.figshare.c.3616538_d4
title: MOESM1 of Real-time urinary electrolyte monitoring after furosemide administration in surgical ICU patients with normal renal function

description: Additional file 1. Dataset of single-dose group.
DOI: 10.15468/dl.wffhaf
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Centaurea behen L."
 ]
}

 The dataset includes 22 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032776-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616556_d9
title: Additional file 13: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Stem-loop qRT-PCR primer characteristics. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3616574_d4
title: MOESM6 of The role of antigen presenting cells in the induction of HIV-1 latency in resting CD4+ T-cells

description: Additional file 6: TableÂ S3. Sequence mapping rates in RNA-seq.
DOI: 10.6084/m9.figshare.c.3616586_d1
title: Additional file 2: Table S2. of Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences

description: Most abundant bacterial genus-level OTUs in indoor air compared to potential source environments. Values represent the median coverage (%) in the sequence dataset. Only the 20 most abundant (ca. 80 % of the sequences) family-level taxa in indoor air are shown. The representative genus in the OTU is shown [22, 49–68]. (xlsx 18.7 kb)
DOI: 10.6084/m9.figshare.c.3616586_d2
title: Additional file 5: Table S4. of Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences

description: Metadata associated with all residences sampled in this study. Information on the characteristics of the household was collected at the time of sampling. (xlsx 12.1 kb)
DOI: 10.6084/m9.figshare.c.3616556_d11
title: Additional file 9: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: Annotated targets of novel miRNAs. (XLSX 34 kb)
DOI: 10.6084/m9.figshare.c.3616586_d3
title: Additional file 1: Table S1. of Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences

description: OTU table.Â Genus-level taxonomic composition of bacterial communities associated with indoor air and sources.Â Columns correspond to samples, rows correspond to OTUs, and values represent the number of timesÂ an OTU appears in a particular sample. (xlsx 684 kb)
DOI: 10.6084/m9.figshare.c.3616556_d12
title: Additional file 10: of MicroRNA and mRNA expression profiling analysis revealed the regulation of plant height in Gossypium hirsutum

description: The location of miRNA target genes related to dwarf mutant and tall-culm mutant in cotton AD genome. (XLSX 326 kb)
DOI: 10.6084/m9.figshare.c.3616574_d6
title: MOESM2 of The role of antigen presenting cells in the induction of HIV-1 latency in resting CD4+ T-cells

description: Additional file 2: Table S1. Comparison of gene expression between latency inducing and non-inducing antigen presenting cell subpopulations using RNA-seq. Using the bioinformatics databases DAVID [80], GeneCards and GeneCodis, cell compartment gene function was determine of each gene. Genes expressed on antigen presenting cell (APC)-surface with the ability to signal to T-cells were shortlisted and their role in HIV-1 infection and DC-T-cell interaction was further determined using PubMed. Genes that were common to the RNA-seq and microarray generated gene lists are in italics and underlined in Table 1. Acronyms used: intracellular adhesion molecules (ICAM), C-type lectin (CLEC), immunoglobulin (Ig), T-cell immune-receptor with Ig and tyrosine-based inhibition motif (ITIM) domains (TIGIT), DNAX accessory molecule-1 (DNAM-1), cytotoxic and regulatory T-cell molecule (CRTAM), junction adhesion molecules (JAMs), blood brain barrier (BBB), leukocyte function antigen (LFA), dendritic cell-specific intercellular adhesion molecule-3-grabbing non-integrin (DC-SIGN), galectin-1 (Gal-1), cysteine-dependent aspartate-directed proteases (caspase), factor for adipocyte differentiation 158 (FAD158), extracellular matrix (ECM), lymph node (LN), nuclear factor-kappa-B (NFkB), vascular endothelial growth factor (VEGF), major histocompatibility complex (MHC), T-cell receptor (TcR), cytotoxic T-lymphocyte-associated protein 4 (CTLA-4), TYRO protein tyrosine kinase-binding protein (TYROBP), interleukin (IL-), nuclear factor of activated T-cells (NFAT), vasoactive intestinal polypeptide receptor 1 (VIPR1), T-cell immunoglobulin mucin-3 (Tim-3), monocyte derived dendritic cells (MDDC), natural killer cells (NK), human T-lymphotropic virus (HTLV-1), NFAT activating protein with immune-receptor tyrosine-based activation motif (NFAM1, CNAIP), cortical thymocyte-like protein (CTH, CTXC), B-cell receptor (BcR), HIV-associated neurocognitive disorder (HAND), antibody dependent cellular cytotoxicity (ADCC), Fc receptor (FcR), scavenger receptor class-A-1 (SRA-1), epidermal growth factor like domain, multiple/protein 5/9 (EGFL5).
DOI: 10.6084/m9.figshare.c.3616586_d4
title: Additional file 6: Table S5. of Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences

description: Mapping file containing information on all samples analyzed in this study, including the barcode identifying each sample in the sequence data set. This information was used during sequence processing and data analysis, in particular with QIIME, R and SourceTracker. (xlsx 56.6 kb)
DOI: 10.6084/m9.figshare.c.3616595_d1
title: Additional file 1: Table S1. of Genomic characterization of plant cell wall degrading enzymes and in silico analysis of xylanses and polygalacturonases of Fusarium virguliforme

description: CAZy of Fusarium virguliforme. (XLSX 480 kb)
DOI: 10.6084/m9.figshare.c.3616586_d6
title: Additional file 4: Table S3. of Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences

description: Sink predictions in indoor air (SourceTracker) for different indoor and outdoor sources.Â Sink predictions values were determined using SourceTracker. Higher sink prediction values for a source environment indicate a higher proportion of its OTUs in indoor air. (xlsx 43 kb)
DOI: 10.6084/m9.figshare.c.3616607_d1
title: MOESM2 of Long-term variability in sugarcane bagasse feedstock compositional methods: sources and magnitude of analytical variability

description: Additional file 2. â  Râ   code used to analyze data file.
DOI: 10.15468/dl.wy92aa
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Commiphora mukul (Hook. ex Stocks) Engl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032777-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3616613_d5
title: Additional file 5: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Full Results of EdgeR Differential Expression Analysis of Normalized Sequence Reads Corresponding to Known Bovine miRNAs by miRDeep. (XLSX 33 kb)
DOI: 10.6084/m9.figshare.c.3616613_d6
title: Additional file 4: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Identification of Novel Bovine miRNAs Based on Seed Sequence Alignments (A) and Sequence Identity of Novel Bovine miRNAs from BLAST Analysis of miRBase 19 (B). (XLSX 112 kb)
DOI: 10.6084/m9.figshare.c.3616613_d7
title: Additional file 6: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Animal Infection and Milk Exosome Data from Staph infected quarters. Control exosomes came from same quarter prior to infection. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.c.3616613_d8
title: Additional file 1: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Summary (A) of Unique and Total Sequence Reads Counts and Summary (B) of Sequence Identities for Matches to Rfam. (XLSX 17 kb)
DOI: 10.6084/m9.figshare.c.3616670_d2
title: Additional file 2: Figure S1. of Genome-wide analysis of MAPKKKs shows expansion and evolution of a new MEKK class involved in solanaceous species sexual reproduction

description: Phylogenetic analysis of the MEKK subfamily in four Solanaceous species (S. chacoense, S. tuberosum, S. lycopersicum, and N. benthamiana). The kinase domain of the A. thaliana BRI1 receptor kinase was used as the outgroup to root the tree. Figure S2. Phylogenetic analysis of the whole MEKK subfamily into the 15 studied species and S. chacoense. The kinase domain of the A. thaliana BRI1 receptor kinase was used as the outgroup to root the tree. Figure S3. Phylogenetic analysis of the whole MEKK subfamily in P. abies, P. glauca and A. thaliana. Sequence from AtMPK1 was used as the outgroup to root the tree. Figure S4. Sequence logos of the 12 subdomains of the kinase catalytic domain from all FRKs orthologs, AtMAPKKK15-18 orthologs, AtMAPKKK13-14 orthologs, and AtMAPKKK1-12 orthologs. Sequence alignments of all AtMAPKKK1-12 orthologs were used to create a sequence logo using the WebLogo website ( http://weblogo.berkeley.edu/logo.cgi ) in order to compare the 12 kinase subdomains. The same procedure was applied to AtMAPKKK13-14 orthologs, the AtMAPKKK15-18 orthologs and all the FRK-like proteins, separately. Sequence logos were also used to compare each group (groups I to IV) of the FRK class. Figure S5. Expression analysis of members of the FRK class in four species. A. RT-PCR expression analyses of ScFRK1 to 6 from various tissues in S. chacoense. B-D. Absolute expression data taken from P. trichocarpa (B), S. lycopersicum (C), and S. tuberosum (D) available in The Bio-Analytic Resource (BAR) for plant biology, ( http://bbc.botany.utoronto.ca ). Columns in the heat maps are independant from each other. Lowest expression level in represented in yellow while the highest is in red. (ZIP 11579 kb)
DOI: 10.6084/m9.figshare.c.3616613_d9
title: Additional file 2: of MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection

description: Total (A) and Normalized (B) Sequence Counts per Known Bovine miRNA Homolog Group. (XLSX 73 kb)
DOI: 10.6084/m9.figshare.c.3616748_d1
title: Additional file 1: of Mutational status of synchronous and metachronous tumor samples in patients with metastatic non-small-cell lung cancer

description: SNaPshot Multiplex analysis of KRAS codons 12 and 13 (HUGO Gene Nomenclature Committee #6407). (ODP 128 kb)
DOI: 10.6084/m9.figshare.c.3616757_d1
title: Additional file 1: of Effect of fatigue caused by a simulated handball game on ball throwing velocity, shoulder muscle strength and balance ratio: a prospective study

description: Availability of raw data. (XLS 25 kb)
DOI: 10.5281/zenodo.14433334
title: Makna dan Nilai Tradisional Bubur Pedas Melayu sebagai Warisan Budaya

description: Bubur Pedas merupakan salah satu makanan tradisional yang memiliki makna mendalam bagi masyarakat Melayu. Secara simbolis, Bubur Pedas tidak hanya sekadar makanan tetapi juga lambang identitas budaya Melayu yang kuat. Hidangan ini menggambarkan kearifan lokal dalam memanfaatkan bahan-bahan alami yang tersedia di lingkungan sekitar, seperti umbi-umbian, kacang-kacangan, sayuran, dan rempah-rempah. Pemilihan bahan-bahan tersebut menunjukkan hubungan yang harmonis antara manusia dengan alam, di mana masyarakat Melayu menjaga keseimbangan dalam pemanfaatan sumber daya alam untuk kebutuhan sehari-hari.
DOI: 10.5281/zenodo.14433335
title: Makna dan Nilai Tradisional Bubur Pedas Melayu sebagai Warisan Budaya

description: Bubur Pedas merupakan salah satu makanan tradisional yang memiliki makna mendalam bagi masyarakat Melayu. Secara simbolis, Bubur Pedas tidak hanya sekadar makanan tetapi juga lambang identitas budaya Melayu yang kuat. Hidangan ini menggambarkan kearifan lokal dalam memanfaatkan bahan-bahan alami yang tersedia di lingkungan sekitar, seperti umbi-umbian, kacang-kacangan, sayuran, dan rempah-rempah. Pemilihan bahan-bahan tersebut menunjukkan hubungan yang harmonis antara manusia dengan alam, di mana masyarakat Melayu menjaga keseimbangan dalam pemanfaatan sumber daya alam untuk kebutuhan sehari-hari.
DOI: 10.6084/m9.figshare.c.3616820_d1
title: Additional file 8: Table S5. of Determining the origin of synchronous multifocal bladder cancer by exome sequencing

description: Odd’s ratio and Fisher’s exact test p-values for a frequency difference between SNVs shared among all tumours and SNVs found private to tumours, with respect to dinucleotide context. The table includes results for Patients 1 and 2. Bold lines show significant results with odd’s ratio &gt; 1. (XLS 20 kb)
DOI: 10.6084/m9.figshare.c.3616820_d2
title: Additional file 3: Table S3. of Determining the origin of synchronous multifocal bladder cancer by exome sequencing

description: Odd’s ratio and Fisher’s exact test p-values for a frequency difference between SNVs shared among all tumours and SNVs shared among all samples, with respect to dinucleotide context and trinucleotide context. The table includes results for Patients 1 and 2. Bold lines show significant results with odd’s ratio &gt; 1. (XLS 25 kb)
DOI: 10.6084/m9.figshare.c.3616820_d3
title: Additional file 1: Table S1. of Determining the origin of synchronous multifocal bladder cancer by exome sequencing

description: Number of reads and number of detected SNVs and indels. Cov: coverage. The strict filtering criteria include the GATK quality score (“PASS”), excluding segmental duplications, removing SNVs included in dbSNPv.138, only including SNVs reliably genotyped in all 4 samples, and identified at least in 4 reads. See Material and Methods for details. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3616820_d5
title: Additional file 7: Table S4. of Determining the origin of synchronous multifocal bladder cancer by exome sequencing

description: Odd’s ratio and Fisher’s exact test p-values for a frequency difference between SNVs shared among all tumours and SNVs shared among all samples, with respect to dinucleotide context and resulting mutations. The table includes results for Patients 1 and 2. Bold lines show significant results with odd’s ratio &gt; 1. (XLS 24 kb)
DOI: 10.5281/zenodo.13996551
title: Confocal and micro-CT data of Glyphonotum hsiaoi, holotype, NIGP200729

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of Glyphonotum hsiaoi (NIGP200729) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "An enigmatic Cretaceous beetle in Kachin amber with tentative affinities to Pythidae (Coleoptera: Tenebrionoidea)" (DOI:10.1002/ece3.70615). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.6143 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 3001. The TIFF stack is provided.
DOI: 10.5281/zenodo.13996552
title: Confocal and micro-CT data of Glyphonotum hsiaoi, holotype, NIGP200729

description: This dataset contains the raw confocal laser scanning microscopy (CLSM) slices and X-ray microtomography (micro-CT) slices for the holotype of Glyphonotum hsiaoi (NIGP200729) from mid-Cretaceous Burmese amber. This dataset is associated with the publication "An enigmatic Cretaceous beetle in Kachin amber with tentative affinities to Pythidae (Coleoptera: Tenebrionoidea)" (DOI:10.1002/ece3.70615). Confocal images were obtained with a Zeiss LSM710 confocal laser scanning microscope, using the 561 nm (DPSS 561-10) laser excitation line. The original CZI files are provided, which could be opened by the ZEISS ZEN software. Micro-CT data were obtained with a Zeiss Xradia 520 Versa 3D X-ray microscope. Scanning parameters were as follows: isotropic voxel size, 2.6143 μm; power, 3 W; acceleration voltage, 40 kV; exposure time, 4 s; projections, 3001. The TIFF stack is provided.
DOI: 10.15468/dl.zx93e7
title: Occurrence Download

description: A dataset containing 322 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Curculigo orchioides Gaertn."
 ]
}

 The dataset includes 322 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032779-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/stw7-8b36
title: MESO standard cell models

description: The proposed SystemVerilog MESO models offer significantly faster simulation capabilities compared to the physical model [1], improving simulation speed while preserving essential accuracy. This enhancement enables the design of more complex circuits, including MESO cells, standard cells, and intellectual property (IP) blocks, while incorporating time multiplexing techniques.The development of this MESO-based standard cell library follows a systematic process: first, the basic MESO cell is simulated using a physical SPICE and Verilog-A model to measure key parameters, such as transition time. Next, a behavioral MESO cell model is created in SystemVerilog based on these parameters. Following this, a behavioral MESO-based majority gate is designed. Finally, behavioral MESO-based standard cells, including OR, NOR, AND, and NAND gates, are constructed using the MESO-based majority gate.
DOI: 10.15468/dl.bkeze4
title: Occurrence Download

description: A dataset containing 395 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Helicteres isora L."
 ]
}

 The dataset includes 395 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032781-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t9pu8k
title: Occurrence Download

description: A dataset containing 137030 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Occurrence evidence)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dactylorhiza incarnata (L.) Soó"
 ]
}

 The dataset includes 137030 records from 537 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032780-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/n9gy-sb35
title: test

description: We must have current contact information, especially your email address. Verify your name and institutional affiliation; make sure that we've segmented your first and last names correctly and that any accented characters are properly represented. Return to the registration form to update your information. If your e-mail address lijingnan@fujitsu.com is no longer valid, then you must change your E-mail address BEFORE proceeding. We must have current contact information, especially your email address. Verify your name and institutional affiliation; make sure that we've segmented your first and last names correctly and that any accented characters are properly represented. Return to the registration form to update your information. If your e-mail address lijingnan@fujitsu.com is no longer valid, then you must change your E-mail addressBEFORE proceeding. We must have current contact information, especially your email address. Verify your name and institutional affiliation; make sure that we've segmented your first and last names correctly and that any accented characters are properly represented. Return to the registration form to update your information. If your e-mail address lijingnan@fujitsu.com is no longer valid, then you must change your E-mail addressBEFORE proceeding.
DOI: 10.15468/dl.xvtyqy
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Diversidad de grupos selectos de flora (Magnoliopsida: Malvales, Sapindales, Fabales, Laurales, Solanales y Caryophyllales) y fauna (Lepidoptera, Diptera, Odonata, Amphibia, Reptilia, Aves y Mammalia) del APFF Boquerón de Tonalá, Oaxaca, México",
 "TaxonKey is Solanales"
 ]
}

 The dataset includes 21 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032782-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.