cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28840679.v1
title: <i>Selected Input and Output Files for</i> <b>Data-driven detection of candidate enhancer-activating and repressing SNPs in immune regulation in the Tyrolean population</b>

description: Research has shown that non‑coding single nucleotide polymorphisms (SNPs) can modulate gene expression by enhancing or disrupting transcription‑factor binding sites. Leveraging whole‑genome sequencing and matched RNA‑sequencing from 23 individuals native to the Tyrolean Alps, we applied our data‑driven protocol to systematically scan each individual for mutations that create <i>de novo</i> gamma‑interferon‑activated sequence (GAS) motifs and therefore into potential activating enhancer elements (creator SNPs) or abolish existing sites (destroyer SNPs). Of approximately 17 million nearly complete GAS motifs (i.e., five out of six matching nucleotides; ncGAS) and approximately 2.4 million genuine GAS motifs, the cohort carried 15,014 creator and 19,779 destroyer SNPs. Of those, 676 creators and 732 destroyers lay within ±10 kb of immune‑related genes. Integrating transcript abundance revealed 33 creator‑associated and 56 destroyer‑associated genes with significant expression changes of nearby genes. H3K27ac ChIP‑seq in peripheral‑blood mononuclear cells aligned well with three creator SNPs, potentially affecting <i>CASP1</i> (rs1045872680), <i>DOCK10</i> (rs149378511), and <i>PICALM</i> (rs41381550), and three destroyer SNPs, potentially affecting <i>CCR1</i> (rs34919616), HDAC4 (rs1476145875), and <i>ORAI1</i> (rs116376569) with potential cytokine‑responsive enhancers. Our study demonstrates that SNPs can create or destroy enhancer elements and thereby alter the expression of immune pathway genes in humans. The scalable framework lays the groundwork for larger multi‑ethnic screens to chart regulatory variants, refine disease biomarkers, and guide precision immunomodulation. With this analysis, we underscore a simple yet powerful premise: one base change can shift the balance of human immunity—mapping those changes charts the path to tailored interventions.
DOI: 10.17632/v89x8pxmgd
title: Data for: Wear Performance of Incoloy 800HT and Inconel 617 in Various Surface Conditions for High-Temperature Gas-Cooled Reactor Components

description: Data associated to the figures in "Wear Performance of Incoloy 800HT and Inconel 617 in Various Surface Conditions for High-Temperature Gas-Cooled Reactor Components"
DOI: 10.25452/figshare.plus.27207987.v1
title: <b>ODS1 - Dataset of sputum smear microscopy images for Tuberculosis</b>

description: <b>ODS1 - Dataset of sputum smear microscopy images for Tuberculosis</b>This dataset was built from 25 sputum smear slides (S) from different selected patients. The sputum samples from patients suspected of being pulmonary TB cases were prepared by the Kinyoun stain method.Two sets of digital field (DF) images were acquired from each slide (S01 to S25). Each set is called Tile Region (TR1 and TR2). Each TR is composed of 164 DF images. From each DF image, 11 images were obtained:one DF image using autofocus microscope function.ten DF images with different focal depth (5 above and 5 below relative to the position of the autofocus image - Z axis).The images acquired are true-color 24-bit image with 1040x1388 pixels. The images were acquired with a Canon PowerShot A640 digital camera, which couples with a 10-megapixel CCD image sensor with a 4× optical zoom. The microscope used was a Zeiss Axioshop 40. A magnification of 100× and a numerical aperture of 1.25 was used.This dataset has 90,200 DF images resulting from 8,200 stacks of 11 images of the same DF image, acquired at different focal depths. The 6th image in the stack is the autofocus image. It was designed to evaluate algorithms for selecting the best autofocusing measurement, and for evaluating image fusion algorithms, for example. Therefore, the bacilli in the images of the data set are not labelled.The folders are individually stored as tar.gz archives, for a total size of 127 GB.
DOI: 10.5522/04/14596077.v2
title: Data for "Momentum-resolved lattice dynamics of parent and electron-doped Sr2IrO4"

description: Data for the manuscript “Momentum-resolved lattice dynamics of parent and electron-doped Sr2IrO4" by C. D. Dashwood, H. Miao, J. G. Vale, D. Ishikawa, D. A. Prishchenko, V. V. Mazurenko, V. G. Mazurenko, R. S. Perry, G. Cao, A. de la Torre, F. Baumberger, A. Q. R. Baron, D. F. McMorrow, and M. P. M. Dean, Phys. Rev. B 100, 085131 (2019).<br>The inelastic x-ray scattering (IXS) data is provided in individual text files in the 'Scans' folder, labelled by compound (parent/doped), temperature and Q-point. The first line of each file is the header, followed by the data. The columns are the energy in meV, the IXS intensity and the error in the intensity respectively.
DOI: 10.17632/hxh8kd3snj
title: Acoustic Signal Dataset: Tall Coconut Fruit Species

description: The dataset contains the extracted acoustic signal features of tall Philippine coconut fruits. There are a total of 129 coconut samples that were tapped uniformly on their three side ridges. Acoustic signals acquired from each ridge are recorded, having a total of 387 acoustic signals.
The coconut_acoustic signals.csv shows the acoustic features of coconuts. The dataset is divided into three sheets: ‘Ridge A’, ‘Ridge B’, and ‘Ridge C’. Acoustic signals in each sheet are labeled with their corresponding sample number and their maturity level classification. There are three maturity levels used with their respective maturity level code (im: ‘premature’, m: ‘mature’, om: ‘overmature’). There are 8, 36, and 85 coconut samples per maturity level, respectively.
The dataset can be used for machine learning procedures and the classification of coconuts according to their maturity levels based on their acoustic features.
DOI: 10.6084/m9.figshare.28926785.v1
title: DEI statement extracts from Canadian universities.docx

description: 1. <b>Description of the Data</b>This data set consists of full-text DEI (Diversity, Equity, and Inclusion) or EDI (Equity, Diversity, and Inclusion) statements issued by a selected range of Canadian universities. These texts were used as the primary data source for a critical discourse analysis (CDA) study focused on tokenism, symbolic inclusion, and rhetorical strategies of exceptionalism in institutional discourse.All statements are:<b>Public-facing</b>, accessible from institutional websites<b>Dated between 2017 and 2024</b>, depending on publicationEither web pages or PDF documents authored by university administrators, EDI offices, or equity councils.2. <b>Purpose of the Data</b>The documents were used to identify discursive patterns relating to symbolic equity practices. Extracts from these texts were analyzed interpretively to examine how institutional language performs equity rather than enacts structural change. Only the selected excerpts were used in the paper; this file provides the URLs to the <b>entire source documents</b> for transparency and reproducibility.
DOI: 10.6084/m9.figshare.29134769.v1
title: Timing of calcification and environmental variability determine pH proxy fidelity in coastal calcifying macroalgae

description: Long-lived calcifying marine biota are increasingly used as palaeo-archives for reconstructing ocean pH. They enable exploration of the rate and magnitude of ocean acidification in shallow-water ecosystems serving as proxies for environmental pH reconstruction. However, shallow water systems often have highly variable carbonate chemistry and the impact of this on the accuracy of pH reconstructions from long-lived marine calcifiers is not known. In particular, a better understanding of the timing of calcification with respect to environmental pH cyclicity is needed. To test the fidelity of coastal environmental pH proxies, we assessed the synchronicity between calcification and in-situ diel carbonate chemistry in a tropical (One Tree Island, Great Barrier Reef, Australia) and a temperate (Loch Sween, Scotland) location using calcifying macroalgae (rhodolith forming coralline algae) as a model system. Calcification occurred primarily during daylight hours meaning a recording bias was introduced when compared to the full diel pH range (&lt;0.02 pH units). This bias resulted in pH offsets up to 0.043 pH units over the period 1860 – 2020 representing up to 34% of the projected pH change from 1860 in the tropics and up to 1.8% in temperate latitudes. Therefore, when proxy records are used to extend modern instrumental records of pH, we find that this may lead to bias, indicating daytime, nighttime and full diel pH records should be assessed separately. We suggest that temporal pH cycles should be characterised at a local scale to enable incorporation of potential biases in application of calcifying marine macroalgae to reconstruct pH change.
DOI: 10.17632/gxhxzxwyyg
title: Higher Odds of Dupilumab Prescriptions for Black Patients with Atopic Dermatitis: Results of a Retrospective Study Using DataDerm, The Database of The American Academy of Dermatology (AAD) - Supplemental Material

description: Higher Odds of Dupilumab Prescriptions for Black Patients with Atopic Dermatitis: Results of a Retrospective Study Using DataDerm, The Database of The American Academy of Dermatology (AAD) - Supplemental Material.
Supplemental Table I. Demographics of Dupilumab Prescriptions in Atopic Dermatitis Patients by Age, Sex, Race/Ethnicity, and Insurance Status.
Supplemental Table II. Variables Requested from DataDerm.
Supplemental Table III. DataDerm Patients Extracted and Inclusion Criteria.
DOI: 10.26180/5c6f4d05e66b6
title: Novel K. pneumoniae virulence plasmid sequences from "Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia."

description: Plasmid sequences generated from hybrid assembly of Illumina and Nanopore sequence read data. For full details please see the manuscript below.<br>If you use these data please cite Wyres et al. Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from south and southeast Asia. 2019.
DOI: 10.6084/m9.figshare.17776865.v2
title: REMAP_annotated_data

description: This is the annotated data which is used in evaluation of REMAP.
DOI: 10.6084/m9.figshare.7666055.v2
title: Multi-channel EEG recordings during a sustained-attention driving task (preprocessed dataset)

description: This project adopted an event-related lane-departure paradigm in a virtual-reality (VR) dynamic driving simulator to quantitatively measure brain EEG dynamics along with the fluctuation of task performance throughout the experiment.All subjects were required to have driving license. None of the participants had a history of psychological disorders. All participants were instructed to sustain their attention to perform the task during the experiment, and the 32-ch EEG signals and the vehicle position were recorded simultaneously.Prior to the experiment, all participants completed a consent form stating their clear understanding of the experimental protocol which had been approved by Institutional Review Broad of Taipei Veterans General Hospital, Taiwan.<b>Experiment:</b> <br>All subjects participated in the sustained-attention driving experiment for 1.5 hours in the afternoon (13:00-14:00) after lunch, and all of them were asked to keep their attention focused on driving during the entire period. There was no break or resting session. At the beginning of the experiment (without any recordings), a five-minute pre-test was performed to ensure that every subject understood the instructions and they did not suffer from simulator-induced nausea. To investigate the effect of kinesthesia on brain activity in the sustained-attention driving task, each subject was asked to participate at least two driving sessions on different days. Each session lasted for about 90 min. One was the driving session with a fixed-based simulator but with no kinesthetic feedback, so subject had to monitor the vehicle deviation visually from the virtual scene.The other driving session involved a motion-based simulator with a six degree-of-freedom Stewart platform to simulate the dynamic response of the vehicle to the deviation event or steering. The visual and kinesthetic inputs together aroused the subject to attend to the deviation event and take action to correct the driving trajectory Data Requirement.A wired EEG cap with 32 Ag/AgCl electrodes, including 30 EEG electrodes and two reference electrodes (opposite lateral mastoids) was used to record the electrical activity of the brain from the scalp during the driving task. The EEG electrodes were placed according to a modified international 10-20 system. The contact impedance between all electrodes and the skin was kept &lt;5kΩ. The EEG recordings and the vehicle trajectory amplified by Scan SynAmps2 Express system (Compumedics Ltd., VIC, Australia) were digitized at 500 Hz (resolution: 16 bits) simultaneously.
DOI: 10.17632/nnv3vpy4y3
title: ST_URA8_Dataset_part_3

description: This is a dataset for Bluetooth 5.1 DoA applications with URA8 antenna arrays. It was conceived as a starting point for developing and validating DoA algorithms for real-life scenarios. Unlike other datasets, it contains Bluetooth signals with not only varying intensity of additive white Gaussian noise, but also coherent interfering signals with random DoA coordinates. The dataset is divided into two branches, one consisting of pure sinusoidal tones and the second comprised of baseband Bluetooth signals. The Python code which generated this dataset is included. Therefore, the dataset can be expanded and also modified to suit other types of signals and simulate other types of antenna arrays. Please note that this is only the first part of the dataset. The dataset is comprised of four parts, and you need to download all of them in order to recreate the entire directory structure. Part 1: http://dx.doi.org/10.17632/zjn2zxcgyz.1 Part 2: http://dx.doi.org/10.17632/gysjfpvxpm.1 Part 3: http://dx.doi.org/10.17632/nnv3vpy4y3.1 Part 4: http://dx.doi.org/10.17632/362szwsnc4.1
DOI: 10.17632/sv95c7ydpy
title: Dataset on Social and Psychological Effects of the COVID-19 Pandemic in Turkey

description: This data was collected to investigate how intolerance to distress and anxiety affects some of the behaviors that can be changed in response to the Covid-19 pandemic. This dataset comes from a survey of 2,868 people in Turkey about the effects of the Covid -19 pandemic. The dataset is ideal for studying how the Covid -19 pandemic shaped people's intolerance to distress and anxiety. The survey looked at personal cleaning habits, bank/credit card usage, online shopping, personal security, and stockpiling. The data also included whether an individual or a household member had been officially diagnosed with Covid-19 and socio-demographic data.

- For detailed data descriptor, please visit: 
https://www.nature.com/articles/s41597-022-01563-4

- For citation of its data descriptor:
Sari, E., Kağan, G., Karakuş, B.Ş. et al. Dataset on social and psychological effects of COVID-19 pandemic in Turkey. Sci Data 9, 441 (2022). https://doi.org/10.1038/s41597-022-01563-4
DOI: 10.6084/m9.figshare.11662854.v1
title: questionnaires_18.xlsx

description: Questionnaire data on well-being in bark beetle impacted forests<br>
DOI: 10.6084/m9.figshare.12380708.v1
title: Micromobility Survey Responses.csv

description: Respondents of this survey consist of both avid e-scooter users and non-users at UCLA, and addresses respondents’ scooter parking behaviors and understanding which incentives to parking scooters correctly most resonated with them. The survey was created using Google Form and distributed to the UCLA campus community through social media and listservs. The group posted the survey among UCLA-specific groups on Facebook as well as on other group-messaging apps (e.g. GroupMe) to reach as wide a sampling of the UCLA community as possible from April 17th until May 8th, 2020. The online survey consisted of 12 questions inquiring about topics including students’ parking behavior, parking preference and e-scooter behavior, e-scooter parking on campus, and e-scooter impacts and incentives. To efficiently gather responses, the survey’s questions were mostly multiple choice, sometimes using a sliding scale to appropriately quantify individuals’ responses. For instance, the baseline question, “How often do you ride e-scooters?” contained a range of answers including “never, 1-2 times a quarter, 1-2 times a month, once a week, 2-4 times a week, and daily.” Based on an individual’s answer to this starting question, they would either be guided towards questions more focused on their personal e-scooter behavior or e-scooter parking in general. One question was fill-in-the-blank, as it requested individuals to type in possible locations where e-scooter parking is lacking. The survey results of multiple choice questions were displayed as pie charts and qualitative data was collated and grouped into broad categories for analysis. Finally, all survey questions involving rankings were averaged out to determine the weighted average ranking for each option presented according to SurveyMonkey’s average ranking formula.
DOI: 10.6084/m9.figshare.14705967.v2
title: Risk Factors Of Postpartum Depression: A Study At 4-Weeks Postnatal

description: The study aims to identify possible risk factors of developing postpartum depression of mothers 4 weeks postpartum, this study is a descriptive self-administered study conducted on mothers at 4 week postnatal visits to OB-GYN clinic. Patients were excluded if they were currently using anti-depressants and/or were not at their 4-week post-natal visit. The 10-question Edinburgh Postnatal Depression Scale (EPDS) was used as a screening tool for PPD. Analyses were performed to determine whether smoking, breastfeeding status, marital status, mode of delivery, number of births, income, working status, having chronic diseases, history of psychiatric diseases, previous diagnosis of postpartum depression, gestational age, other variables which identified risk cases.this data set includes the spreadsheet including all the data collected from participants and the analysis obtained from those data
DOI: 10.6084/m9.figshare.14827719.v2
title: Hungarian Raw EEG data

description: Hungarian dataset for registered report<br>
DOI: 10.6084/m9.figshare.24799569.v1
title: Pollinator and plant datasets

description: Floral and pollinating insect surveys were conducted from June 7th to July 7th, 2022. All sites were surveyed once, and enhanced and control pairs were surveyed on the same day to minimise possible confounding temporal and climatic effects. A 100 x 2 m linear transect divided into 10 m sections was set up on each site, or for sites smaller than 100 m long, two parallel transects were set up 20 m apart to create a total length of 100 m. Floral abundance was recorded along transects in 1 m2 quadrats placed randomly in each section (10 x 1 m2 quadrats x site). The total number of floral units per quadrat for each species was recorded. One floral unit was defined as a head (e.g., Trifolium repens), an umbel (e.g., Heracleum sphondylium), or a capitulum (e.g., Centaurea nigra) (outlined by Tarrant et al., 2013 and Carvell et al., 2006). Only open and fresh flowers were included in floral counts. Native wildflower species were identified using Rose (1981) and horticultural plants identified using iNaturalist (2022), Pl@ntNet (2022), and Seek (2022). Pollinating insect surveys were conducted along the same transect as the floral survey on warm, sunny days, with little wind (&lt;5 Beaufort) (O'Connor et al., 2019) between 09:30 and 19:00. Each transect was walked either by two surveyors each observing 1 m to the left or right of the transect, or by one surveyor observing 1 m to the left of the transect line then repeating the transect and observing 1 m to the right, resulting in equal areas surveyed. Surveyors walked at a slow pace and recorded a plant-pollinator visit whenever an insect visitor touched the sexual organs of a receptive flower (Tarrant et al., 2013).
DOI: 10.6084/m9.figshare.28094198.v1
title: test.vcf.gz

description: VCF file
DOI: 10.6084/m9.figshare.28588841.v1
title: Photic-zone euxinia had a major role in the Devonian-Carboniferous boundary mass extinction

description: Sampling information and geochemical data of samples at the Longan section (Supplementary Dataset 1), Duli (Supplementary Dataset 2) and Jura Creek (Supplementary Dataset 3) sections.
DOI: 10.17632/vtvcc9jgyb
title: Demographic Change and Long-Term Economic Growth Path in Asia

description: Replication Folder for "Demographic Change and Long-Term Economic Growth Path in Asia"
DOI: 10.6084/m9.figshare.13077695.v1
title: Metopic Craniosynostosis 3D Photographs

description: Dataset containing preoperative and postoperative <b>3D photographs</b> acquired during the surgical correction of metopic craniosynostosis. All 3D photographs were acquired during surgical intervention. Dataset includes data of 5 patients with metopic craniosynostosis. <br>Data for each subject includes:- Preoperative 3D model of skin tissue from CT scan- Preoperative 3D photograph of skin tissue- Preoperative 3D model of bone tissue from CT scan- Preoperative 3D photograph of bone tissue (before remodeling)- Postoperative 3D photograph of bone tissue (after remodeling)
DOI: 10.17632/2hby8s8kv6
title: Experts values, Cronbach Alpha and CITC for DEMATEL model

description: Questionnaire. The 12 failure modes served as indices in the development of the DEMATEL questionnaire. A 7-point scale was adopted for the scoring system, where 6 represented the highest effect and 0 represented no effect. The respondents to the DEMATEL questionnaire were the 9 experts that participated in the FMEA survey. The content was explained to the respondents before the questionnaires were administered. All the questionnaires were retrieved, for a retrieval rate of 100%.
The table 3 shows the direct relation matrix, which is the same as pairwise comparison matrix of the experts. Before we create Initial direct-relation matrix, we calculated Cronbach's alpha and CITC based on questionnaires from experts.
Cronbach’s alpha was applied to test the reliability of the data collected from the questionnaires in this research. The test results revealed that the questionnaires used in the DEMATEL analyses are reliable (since exceeds 0.7). The Cronbach’s alpha value in this research was 0.9971.
In this research, the consistency between the survey results will be examined when a group of experts are invited to participate in the DEMATEL survey. Corrected item-total correlation was applied to evaluate the internal consistency of the questionnaire, and it was considered acceptable for the standard of 0.30 (Bernstein, 1994). There are total of 9 experts who joined and shared their opinions regarding this research. The value of corrected item-total correlation can be computed by the Pearson product-moment correlation coefficient. In general, the respondent with the smallest corrected item-total correlation value below 0.30 will be removed and the values of corrected item-total correlation will be calculated again until all the values of corrected item-total correlation for the remaining items are above 0.3. However, all the corrected item-total correlation values are above 0.3 in this research, which means the survey results are very consistent. Thus, no respondent has been removed. The values of corrected item-total correlation for the 9 experts were listed in Table 2 below.
DOI: 10.17632/7zzpr4d8tz
title: Mg-Ca /nHAC composites mediating macrophage polarization to promote bone repair

description: xiaojing, nie (2023), “Study on the Mechanism by which Macrophage Polarization Promotes Bone Repair Mediated by Magnesium-Calcium Alloy/Mineralized Collagen Composite Materials”, Mendeley Data, V1, doi: 10.17632/7zzpr4d8tz.1