cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3635378_d7.v1
title: Additional file 6: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Table of OGS2 gene transcripts equivalences to OGS1 and NCBI-101 gene sets, using the CDS-exon locations on the genome assembly. “NCBI101geneID” and “OGS1geneID” include equivalence value as percent equal to CDS.EXON. For example: Nasvi2EG000002t1 nasvn14g1803t1/99.70 is 99 % CDS equal, 70 % exon equal; NV10001-RA/74.89 is 74 % CDS equal, 89 % exon equal. The “NCBI101geneID” is the local ID “gene1803” from the NCBI GFF gene table, adding “nasvn14g” prefix and alternate transcript suffix “t1,t2,..”, with associated column of public “NCBI101transcriptID” (XM_ or NM_). “Genome21loc” is the gene span location on Nvit_2.1 scaffold assembly, “Genome1loc” is the gene span location on Nvit_1.0 scaffold assembly (most Nvit_2.1 and 1.0 are equivalent). “NCBI101also” and “OGS1also” are additional gene transcripts with partial equivalence to the OGS2 gene. Nonequivalence values: “na” for “NCBI101geneID”, “novid” for “OGS1geneID”. “WaspAtlasNCBI101” lists NCBI-101 equivalent genes provided by [40]. Disagreements are marked by “*”. These appear to be UTR-exon or gene-span overlaps, rather than the CDS-exon overlap used in this table equivalence. (XLSX 2889 kb)
DOI: 10.6084/m9.figshare.c.3635378_d5.v1
title: Additional file 13: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Model selection table for models comprising different combinations of factors with a putative role in characterizing genes with and without annotated isoforms. (XLS 59Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d6.v1
title: Additional file 3: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: OrthoDB6 BUSCO (Benchmarking Universal Single Copy Orthologs) genes missing from OGS2. (XLS 1367Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d4.v1
title: Additional file 7: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: OGS2 genes whose ortholog groups are characterized by lineage-specific expansions or contractions. (XLS 3711Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d2.v1
title: Additional file 8: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Protein evolutionary distances of OGS2.0 genes compared to ant and bee lineages, residuals distances after model fitting and fast/slow evolving categorization at the 5th and 20th quantile threshold. (XLS 2790Â kb)
DOI: 10.6084/m9.figshare.c.3635378_d3.v1
title: Additional file 11: of OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis

description: Genes with more than 10 isoforms present in OGS2. (XLS 48Â kb)
DOI: 10.15468/dl.jramk2
title: Occurrence Download

description: A dataset containing 460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carangoides equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 460 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035629-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3635225_d1.v1
title: Additional file 1: Table S1. of Identification of recurrent focal copy number variations and their putative targeted driver genes in ovarian cancer

description: Sample information of 587 ovarian patients and normal tissue samples with Copy number variation and mRNA data on different platforms. Table S2. Distributions of focal gains/losses in primary tumors and adjacent normal tissue separately on each of the three microarray platforms. Table S3. List of genes encoded in the recurrent focal event regions. Table S4. Prognostic results of ovarian cancer progression using fCNV on three platforms. (XLSX 20403 kb)
DOI: 10.6084/m9.figshare.c.3635183_d2.v1
title: Additional file 2: of ECM1 promotes migration and invasion of hepatocellular carcinoma by inducing epithelial-mesenchymal transition

description: One hundred twenty patientâ  s clinical characteristics and the complete follow-up data. (XLS 36Â kb)
DOI: 10.6084/m9.figshare.c.3635183_d1.v1
title: Additional file 1: of ECM1 promotes migration and invasion of hepatocellular carcinoma by inducing epithelial-mesenchymal transition

description: The changes of the expression of ECM1 in Bel-7402 cells effect some protenin levels, and the ability of migration and invasive potential of Bel-7402 cells. (XLSX 40Â kb)
DOI: 10.6084/m9.figshare.c.3635168_d2.v1
title: Additional file 1: of Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

description: Consists of Tables S1â  S8. Table S1. Information and relationships of the sesame high-density genetic map to genome assembly; Table S2. Bin marker information for the high-density genetic map; Table S3. List of the scaffolds anchored onto chromosomes; Table S4. The 6 split scaffolds and the 4 relocated scaffolds; Table S5. Variation in plant height and related traits in the population across field trials. Table S6. List of genes in QTLs qPH-8.2 and qPH-3.3; Table S7. List of genes in the qSCl-8.1 QTL; Table S8. List of genes in the qSCb-4.1 QTL. (XLSX 152 kb)
DOI: 10.6084/m9.figshare.c.3635150_d16.v1
title: Additional file 10: Figure S8. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Over-represented Cellular Location terms from Gene Ontology (GO) of R. solani genes up- (a.) and down- (b.) regulated when confronted with S4 Serratia proteamaculans.
DOI: 10.6084/m9.figshare.c.3635150_d15.v1
title: Additional file 6: Figure S4. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Over- (a.) and under- (b.) represented Gene Ontology (GO) terms of R. solani genes up-regulated when confronted with S4 Serratia proteamaculans.
DOI: 10.6084/m9.figshare.c.3635150_d13.v1
title: Additional file 9: Figure S7. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Over-represented Gene Ontology (GO) terms of R. solani genes down-regulated when confronted with AS13 Serratia plymuthica.
DOI: 10.6084/m9.figshare.c.3635150_d14.v1
title: Additional file 8: Figure S6. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Over- (a.) and under- (b.) represented Gene Ontology (GO) terms of R. solani genes up-regulated when confronted with AS13 Serratia plymuthica.
DOI: 10.6084/m9.figshare.c.3635150_d12.v1
title: Additional file 5: Table S2. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Diiferential Expression Data of genes being up- and down- regulated between control treatment and treatment challenged with Serratia plymuthica AS13.
DOI: 10.6084/m9.figshare.c.3635150_d10.v1
title: Additional file 17: Figure S15. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Comparison of Biological Process annotations of R. solani genes between the induced (log2FPKM &gt; 0) and repressed (log2FPKM
DOI: 10.6084/m9.figshare.c.3635150_d7.v1
title: Additional file 11: Figure S9. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Over-represented Cellular Location terms from Gene Ontology (GO) of R. solani genes up- (a.) and down- (b.) regulated when confronted with AS13 Serratia plymuthica.
DOI: 10.6084/m9.figshare.c.3635150_d8.v1
title: Additional file 16: Figure S14. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Comparison of Molecular Function annotations of R. solani genes between the induced (log2FPKM &gt; 0) and repressed (log2FPKM
DOI: 10.6084/m9.figshare.c.3635150_d4.v1
title: Additional file 4: Table S1. of Transcriptomic changes in the plant pathogenic fungus Rhizoctonia solani AG-3 in response to the antagonistic bacteria Serratia proteamaculans and Serratia plymuthica

description: Diiferential Expression Data of genes being up- and down- regulated between control treatment and treatment challenged with Serratia proteamaculans S4.
DOI: 10.6084/m9.figshare.c.3635063_d6.v1
title: Additional file 3: Figure S1. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

description: Genetic linkage maps generated using 297 hybrid seedlings derived from ‘Jonathan’ × ‘Golden Delicious’. The 17 linkage groups represented the 17 chromosomes of Malus × domestica. The common markers between each parental map and consensus map were showed by the read lines. LG: Linkage groups; J: Jonathan; G: Golden Delicious. (RAR 19136 kb)
DOI: 10.6084/m9.figshare.c.3635063_d3.v1
title: Additional file 6: Table S4. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

description: Candidate genes searched from the regions of five significant QTLs (interval
DOI: 10.6084/m9.figshare.c.3635063_d2.v1
title: Additional file 2: Table S3. of A dense SNP genetic map constructed using restriction site-associated DNA sequencing enables detection of QTLs controlling apple fruit quality

description: List of genotyping data of 3441 SNP markers among 297Â F1 seedlings. (XLSX 4309Â kb)
DOI: 10.6084/m9.figshare.c.3635027_d8.v1
title: MOESM1 of Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota

description: Additional file 1: Table S1. Summary of sequencing data for all samples.
DOI: 10.6084/m9.figshare.c.3635027_d4.v1
title: MOESM6 of Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota

description: Additional file 6: Table S5. Corresponding metabolic pathways of the significant functions in the heatmap (related to Fig.Â 4). This table lists the corresponding metabolic pathways that are in Fig.Â 4.
DOI: 10.6084/m9.figshare.c.3635027_d6.v1
title: MOESM5 of Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota

description: Additional file 5: Table S4. Comparison of microorganisms in the gut microbiota at the species level between the fat and lean lines. This table lists the relative fold change and p value of the differences in microorganisms in the gut microbiota at the species level between the fat and lean lines.
DOI: 10.6084/m9.figshare.c.3635027_d3.v1
title: MOESM2 of Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota

description: Additional file 2: Table S2. Numbers of taxa at each level.
DOI: 10.6084/m9.figshare.c.3635027_d1.v1
title: MOESM4 of Divergent selection-induced obesity alters the composition and functional pathways of chicken gut microbiota

description: Additional file 4: Table S3. Comparison of microorganisms in the gut microbiota at the phylum level between the fat and lean lines. This table lists the relative fold change and p value of the differences in microorganisms at the phylum level between the fat and lean lines.
DOI: 10.6084/m9.figshare.c.3635018_d3.v1
title: Additional file 3: Table S3. of Association of common variants identified by recent genome-wide association studies with obesity in Chinese children: a case-control study

description: Association of 32 GWAÂ studies-derived SNP alleles with BMI standard deviation score (BMI-SDS) variability in Chinese children. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3635018_d1.v1
title: Additional file 1: Table S1. of Association of common variants identified by recent genome-wide association studies with obesity in Chinese children: a case-control study

description: Basic genotyping information of 40 GWAÂ studies-derived SNPs in Chinese children. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3635018_d2.v1
title: Additional file 2: Table S2. of Association of common variants identified by recent genome-wide association studies with obesity in Chinese children: a case-control study

description: Association of 32 GWAÂ studies-derived SNP alleles with overweight in Chinese children. (XLSX 13 kb)
DOI: 10.15468/dl.6hngbq
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kaiwarinus equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 235 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035630-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3634733_d2.v1
title: Additional file 1: of Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

description: Spreadsheet with taxonomy of species detected and their abundances as read counts. (XLSX 143Â kb)
DOI: 10.6084/m9.figshare.c.3634733_d1.v1
title: Additional file 2: of Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities

description: OTU and taxonomy tables, metadata, and R code for analysis of differential abundance. (ZIP 32Â kb)
DOI: 10.6084/m9.figshare.c.3634685_d1.v1
title: Additional file 1: of Individuals with knee impairments identify items in need of clarification in the Patient Reported Outcomes Measurement Information System (PROMISÂŽ) pain interference and physical function item banks â   a qualitative study

description: Results of Item Screening. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.c.3634664_d2.v1
title: MOESM3 of Tip60 complex binds to active Pol II promoters and a subset of enhancers and co-regulates the c-Myc network in mouse embryonic stem cells

description: Additional file 3: Table S1 . Summary of all ChIP-seq datasets used representing the number of unique reads and GEO accession numbers.
DOI: 10.6084/m9.figshare.c.3634658_d1.v1
title: Additional file 1: of Invasive pneumococcal disease rates linked to meteorological factors and respiratory virus circulation (Catalonia, 2006–2012)

description: Distribution of IPD, respiratory viruses and meteorological factors by month and year. Catalonia, 2006–2012. (XLS 46 kb)
DOI: 10.6084/m9.figshare.c.3634481_d1.v1
title: Additional file 4: of 
                     De novo sequencing and analysis of the cranberry fruit transcriptome to identify putative genes involved in flavonoid biosynthesis, transport and regulation

description: Primer sequences of cranberry selected for SSR marker validation. (XLS 19Â kb)
DOI: 10.6084/m9.figshare.c.3634421_d1.v1
title: Additional file 1: of Over-expression of the long non-coding RNA HOTTIP inhibits glioma cell growth by BRE

description: The rezults of apoptosis array. (XLS 63 kb)
DOI: 10.6084/m9.figshare.c.3634376_d3.v1
title: Additional file 1: of Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley

description: Table S1. Genetic variants of the target region. (XLS 34 kb)
DOI: 10.6084/m9.figshare.c.3634376_d1.v1
title: Additional file 2: of Marker development using SLAF-seq and whole-genome shotgun strategy to fine-map the semi-dwarf gene ari-e in barley

description: Table S2. Oligonucleotide sequences used in qRT-PCR assays. (XLS 18 kb)
DOI: 10.6084/m9.figshare.c.3634373_d2.v1
title: Additional file 6: of MicroRNA profiling in the left atrium in patients with non-valvular paroxysmal atrial fibrillation

description: Table S4. The most overrepresented pathways for miRNAsâ   targets according to KEGG. (DOCX 44 kb)
DOI: 10.15468/dl.c7p6hy
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caranx equula Temminck & Schlegel, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035631-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3633593_d6.v1
title: Additional file 7: Table S6. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: miRNA and targeted gene tumor:normal expression fold changes (70 miRNAs, 35 genes, 30 ESCC cases). (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3633593_d5.v1
title: Additional file 3: Table S2. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: Expression of miRNAs (n = 60) and targeted genes (n = 32) in ESCC cases (n = 30) by biallelic loss status. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3633593_d4.v1
title: Additional file 2: Table S1. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: Average tumor:normal mRNA expression fold changes by biallelic loss status for 52 genes in ESCC cases. (XLS 29 kb)
DOI: 10.6084/m9.figshare.c.3633593_d3.v1
title: Additional file 6: Table S5. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: Tumor:normal expression fold changes for miRNAs and 35 target gene mRNAs in 30 ESCC cases. (XLS 120 kb)
DOI: 10.6084/m9.figshare.c.3633593_d2.v1
title: Additional file 5: Table S4. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: Number and frequency of dysregulated miRNAs in ESCC cases. (XLS 31 kb)
DOI: 10.6084/m9.figshare.c.3633593_d1.v1
title: Additional file 4: Table S3. of Integrative genomics analysis of genes with biallelic loss and its relation to the expression of mRNA and micro-RNA in esophageal squamous cell carcinoma

description: Tumor:normal fold change for expression of 396 miRNAs in 30 ESCC cases. (XLS 283 kb)
DOI: 10.6084/m9.figshare.c.3633569_d5.v1
title: MOESM3 of Characterization of whole-genome autosomal differences of DNA methylation between men and women

description: Additional file 3. Sex-associated CpGs in KORA F4 and the buccal cells study. The table includes CpGs significantly associated with sex in the KORA F4 and in the buccal cells study with chromosome number and position, CGI region, and annotated gene for each CpG, beta estimates and p-values per study.
DOI: 10.6084/m9.figshare.c.3633569_d3.v1
title: MOESM4 of Characterization of whole-genome autosomal differences of DNA methylation between men and women

description: Additional file 4. Sex-related genes considered for enrichment analysis. Given are the official gene symbol and the corresponding chromosomes. X and Y are marked in red since they were excluded from the enrichment analysis.
DOI: 10.6084/m9.figshare.c.3633446_d4.v1
title: Additional file 4: of Physiological and comparative proteome analyses reveal low-phosphate tolerance and enhanced photosynthesis in a maize mutant owing to reinforced inorganic phosphate recycling

description: List of differentially expressed proteins in leaves of Qi319 and Qi319-96 seedlings under − P and + P conditions by MALDI-TOF-TOF/MS. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3633446_d2.v1
title: Additional file 2: of Physiological and comparative proteome analyses reveal low-phosphate tolerance and enhanced photosynthesis in a maize mutant owing to reinforced inorganic phosphate recycling

description: Identification of differentially accumulated proteins and sequences of the identified peptides. (XLS 203 kb)
DOI: 10.6084/m9.figshare.c.3633413_d3.v1
title: Additional file 2: Table S2. of Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

description: Differential expression UGTs between W3 and W1. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3633422_d1.v1
title: Additional file 1: of Clinical and molecular cytogenetic analyses of four patients with imbalanced translocations

description: The OMIM gene associated with phenotype localized in the duplicated and deletion segment of four patients. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.c.3633413_d2.v1
title: Additional file 3: Table S3. of Transcriptome analysis of genes involved in anthocyanins biosynthesis and transport in berries of black and white spine grapes (Vitis davidii)

description: Primers for qRT-PCR. (XLS 25Â kb)
DOI: 10.6084/m9.figshare.c.3633407_d1.v1
title: Additional file 4: of The candidate oncogene (MCRS1) promotes the growth of human lung cancer cells via the miR–155–Rb1 pathway

description: The differently expressed genes after MCRS1 silencing in EPLC-32 M1 cells compared with control cells using microarray analysis. (XLS 129 kb)
DOI: 10.6084/m9.figshare.c.3633281_d10.v1
title: MOESM6 of UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies

description: Additional file 6. New genes or genes with structures that do not match the predicted gene models in the Plasmodium yoelii YM genome sequence.
DOI: 10.6084/m9.figshare.c.3633281_d8.v1
title: MOESM2 of UTR introns, antisense RNA and differentially spliced transcripts between Plasmodium yoelii subspecies

description: Additional file 2. Sequence reads, read quality, and error rates.
DOI: 10.15468/dl.zu7x4v
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zenopsis nebulosa (Temminck & Schlegel, 1845)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 288 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035632-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3633014_d12.v1
title: Additional file 2: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FP DNA Sequences. The A. aegypti supercontig locations (start-end sites) for the entire FAIRE-seq data set are provided. (XLSX 3291Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d11.v1
title: Additional file 3: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs immediately upstream of genes. FPs within 1Â kb upstream of the TSS of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 185Â kb)
DOI: 10.6084/m9.figshare.c.3633014_d9.v1
title: Additional file 4: of High-throughput cis-regulatory element discovery in the vector mosquito Aedes aegypti

description: FPs mapping to 5â   UTRs. FPs mapping to the 5â   UTRs of the indicated genes are noted. FP numbers correspond to the numbers assigned in Additional file 2. (XLSX 25Â kb)