cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bnrn3c
title: Occurrence Download

description: A dataset containing 23159 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Month is January",
 "Month is February",
 "Month is March",
 "Month is April",
 "Month is May",
 "Month is June",
 "Month is July",
 "Month is August",
 "Month is September",
 "Month is October",
 "Month is November",
 "Month is December"
 ]
 },
 "Year 2007-2011",
 "Geometry POLYGON((99.21017 13.21242,99.12971 13.20367,99.12936 13.1738,99.12868 13.11461,99.09402 13.062,99.19386 12.9844,99.16461 12.92676,99.23492 12.73537,99.41657 12.60961,99.40778 12.46375,99.47223 12.26629,99.47223 12.14317,99.54254 12.13744,99.53334 12.01479,99.57184 12.00279,99.56891 11.88527,99.65094 11.82219,99.63043 11.73902,99.58356 11.68451,99.5484 11.61565,99.47223 11.63,99.46344 11.53242,99.15436 11.04544,98.86826 10.79895,98.76782 10.675,98.79446 10.46152,98.50983 9.84403,98.31665 9.1397,98.20926 8.55531,98.2901 7.76252,98.48346 8.18902,98.46149 8.30499,98.62074 8.37474,98.76004 8.02913,98.93143 8.02551,99.08084 7.4725,99.1485 7.72914,99.40631 7.199,99.58997 7.1663,100.12257 6.4203,100.1563 6.54942,100.19998 6.71662,100.28723 6.6777,100.34706 6.56948,100.65003 6.4435,100.78235 6.47397,100.85358 6.25196,101.08649 6.25633,101.10406 5.94608,100.99622 5.76612,101.1524 5.6138,101.3194 5.81931,101.53912 5.91986,101.8429 5.75155,102.07965 6.14128,102.06079 6.31239,101.76379 6.47397,101.56165 6.86971,101.00501 6.88135,100.61243 7.14305,100.44461 7.47613,100.20465 8.50062,99.98547 8.62302,99.85364 9.30887,99.61871 9.31682,99.3609 9.19249,99.23199 9.30237,99.30789 9.39885,99.20728 9.68884,99.20728 9.68884,99.24243 10.34662,99.51004 10.87826,99.58704 11.28616,99.80383 11.76268,99.83313 11.93472,100.04993 12.20402,99.97376 12.69036,100.1261 13.07876,99.95045 13.26615,99.21017 13.21242))",
 "HasCoordinate is true",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 23159 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001178-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ur7sd5
title: Occurrence Download

description: A dataset containing 4930 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pterygoplichthys Gill, 1858"
 ]
}

 The dataset includes 4930 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112817-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tkunro
title: Occurrence Download

description: A dataset containing 633 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Samanea saman (Jacq.) Merr.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 633 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040425-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48ga35
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Letheobia feae (Boulenger, 1906)"
 ]
}

 The dataset includes 17 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284482-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7htju
title: Occurrence Download

description: A dataset containing 63 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calamagrostis sclerantha Hack."
 ]
}

 The dataset includes 63 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112820-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hxz8n
title: Occurrence Download

description: A dataset containing 118 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "License is CC0 1.0",
 "License is CC-BY 4.0",
 "License is CC-BY-NC 4.0"
 ]
 },
 "TaxonKey is Taxidea taxus berlandieri Baird, 1858"
 ]
}

 The dataset includes 118 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0030579-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2r3hhc
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Marmota himalayana (Hodgson, 1841)"
 ]
}

 The dataset includes 122 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0423750-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5avfnr
title: Occurrence Download

description: A dataset containing 290165 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Faune du Parc National des Ecrins"
 ]
}

 The dataset includes 290165 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025011-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e6j4cf
title: Occurrence Download

description: A dataset containing 54701 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Country is one of (United States of America, Mexico, Canada)",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Haemulon plumierii (Lacepède, 1801)"
 ]
}

 The dataset includes 54701 records from 57 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112840-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eudujy
title: Occurrence Download

description: A dataset containing 1873 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Crotalus atrox Baird & Girard, 1853"
 ]
}

 The dataset includes 1873 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014093-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.au7gqe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Drunella kohnoi (Allen, 1971)",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0307948-210914110416597/datasets/export for details.
DOI: 10.15468/dl.hlzzu7
title: Occurrence Download

description: A dataset containing 27773 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "StateProvince is Oregon",
 {
 "or" : [
 "TaxonKey is Andrenidae",
 "TaxonKey is Apidae",
 "TaxonKey is Colletidae",
 "TaxonKey is Halictidae",
 "TaxonKey is Megachilidae",
 "TaxonKey is Melittidae"
 ]
 }
 ]
}

 The dataset includes 27773 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011361-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jq6qzc
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vanda helvola Blume"
 ]
}

 The dataset includes 40 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027280-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h7t2tb
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis altitudinalis Garrido, 1985"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284467-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qg5b9u
title: Occurrence Download

description: A dataset containing 553 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Material sample",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen",
 "BasisOfRecord is Fossil",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Unknown evidence"
 ]
 },
 "Country is Colombia",
 "HasCoordinate is true",
 "TaxonKey is Spatula cyanoptera (Vieillot, 1816)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 553 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000470-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.duceme
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Calamagrostis salina Tzvelev"
 ]
}

 The dataset includes 13 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112809-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3q5qqt
title: Occurrence Download

description: A dataset containing 71 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Uperoleia glandulosa Davies, Mahony & Roberts, 1985"
 ]
}

 The dataset includes 71 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0299501-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjcxsh
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "TaxonKey is Talisia setigera Radlk.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0040431-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sa9hfn
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kleopatrinidae",
 "Continent is one of (North America, South America)"
 ]
}

 The dataset includes 249 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016946-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7uvcr4
title: Occurrence Download

description: A dataset containing 8441 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coronella girondica (Daudin, 1803)"
 ]
}

 The dataset includes 8441 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0284452-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/icpsr30797.v2
title: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2009
title: Version 2

description: These data contain records of statutes for each count of conviction for criminal defendants who were sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission (USSC) during fiscal year 2009. The data are one of two supplementary files that should be used in conjunction with the primary analysis file, which contains records for all defendants sentenced under the guidelines. These data can be linked to the primary analysis file using the unique identifier variable SEQ_NUM. The number of records for a defendant in the current data corresponds to the total number of counts of conviction for that defendant, and that total is recorded in the NOCOUNT variable. As an example, if a defendant has five counts of conviction (NOCOUNT=5), he or she will have five records in the current data. As it is possible for defendants to have multiple statutes applying to a single count of conviction, up to three statutes (STA1-STA3) are recorded for each count of conviction. The data were obtained from the United States Sentencing Commission's Office of Policy Analysis' (OPA) Standardized Research Data File. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: 
DS1: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2009
description: Defendants sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission during fiscal year 2009.
DOI: 10.15468/dl.dkxe9g
title: Occurrence Download

description: A dataset containing 2017 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((10.29349 55.42594,10.29349 55.41927,10.46595 55.4183,10.46608 55.48998,10.29349 55.48998,10.29349 55.42594))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Epidalea calamita (Laurenti, 1768), Botaurus stellaris (Linnaeus, 1758), Spatula clypeata (Linnaeus, 1758), Sterna hirundo Linnaeus, 1758, Tringa totanus (Linnaeus, 1758), Sternula albifrons (Pallas, 1764), Mustela putorius Linnaeus, 1758, Mustela erminea Linnaeus, 1758, Vulpes vulpes (Linnaeus, 1758), Lutra lutra (Linnaeus, 1758), Neomys fodiens (Pennant, 1771))"
 ]
}

 The dataset includes 2017 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002701-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/icpsr24200.v4
title: Federal Justice Statistics Program: Defendants Sentenced Under the Sentencing Reform Act, 2005
title: Version 4

description: These data contain records of criminal defendants who were sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission (USSC) during fiscal year 2005. These data can be linked to the primary analysis file using the unique identifier variable SEQ_NUM. It is estimated that over 90 percent of felony defendants in the federal criminal justice system are sentenced pursuant to the SRA of 1984. The data were obtained from the United States Sentencing Commission's Office of Policy Analysis' (OPA) Standardized Research Data File. The Standardized Research Data File consists of variables from the Monitoring Department's database, which is limited to those defendants whose records have been furnished to the USSC by United States district courts and United States magistrates, as well as variables created by the OPA specifically for research purposes. The data include variables from the Judgement and Conviction (J and C) order submitted by the court, background and guideline information collected from the Presentencing Report (PSR), and the report on sentencing hearing in the Statement of Reasons (SOR). These data contain detailed information such as the guideline base offense level, offense level adjustments, criminal history, departure status, statement of reasons given for departure, and basic demographic information. These data are the primary analysis file and include only statute, guideline computation, and adjustment variables for the most serious offense of conviction. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: 
DS1: Federal Justice Statistics Program: Defendants Sentenced Under the Sentencing Reform Act, 2005
description: Defendants sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission during fiscal year 2005.
DOI: 10.15468/dl.qcb72h
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Babinskaia pulchra Martins-Neto & Vulcano, 1989"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002702-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2tqdf
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 4cff2aca-5ce5-4028-88e6-d79b6449173a",
 "TaxonKey is Elpidia theeli Hansen, 1956"
 ]
}

 The dataset includes 10 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002704-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27053809
title: Eccentric training at long muscle length induces greater neural plasticity than eccentric training at short muscle length

description: collected data from study: Eccentric training at long muscle length induces greater neural plasticity than eccentric training at short muscle length
DOI: 10.6084/m9.figshare.27053809.v2
title: Eccentric training at long muscle length induces greater neural plasticity than eccentric training at short muscle length

description: collected data from study: Eccentric training at long muscle length induces greater neural plasticity than eccentric training at short muscle length
DOI: 10.5281/zenodo.13903690
title: Herbarium specimens reveal a cryptic invasion of polyploid Centaurea stoebe in Europe - ITS1 dataset

description: Description of the data and file structure

We genotyped the ITS1 locus of 178 herbarium specimens using protocol described in Suchan et al. (2018; https://doi.org/10.1111/1755-0998.12948) and processed using custom script. The specimens were chosen after morphological determination of their cytotypes (morphological determination accuracy: 97.8%). We choose this subsample (3.5% of the total number of specimens) to represent comparable distributional ranges and collection dates across both cytotypes, including specimens from both the native and expanded ranges of tetraploid C. stoebe. Genotyping of the ITS1 locus unambiguously identifies the cytotype, as all tetraploid samples exhibit a unique ribotype B, which has never been found in diploid samples (Mráz et al., 2012; https://doi.org/10.1016/j.ympev.2011.11.006).

Files and variables

File: Centaurea_stoebe_ITS1_script.sh

Description: This file contains the script used for processing raw sequence data to obtain a table with the numbers of reads in each sample mapping to the obtained ITS1 variants. The software used was: PEAR v0.9.6, cutadapt v.3.2, vsearch v2.28.1

File: Centaurea_stoebe_sample_list.xlsx

Description: This file contains a list of analyzed herbarium specimens.

Variables



ID - sample ID

Lab working no. - Identifier of the samples in the ITS1 analyses, specifically in the Centaurea_stoebe_ITS1_sequence_numbers.xlsx file

Morphology-based estimation - ploidy of the sample estimated with morphology (2 - diploid, 4 - tetraploid)

ITS seq based estimation - ploidy of the sample estimated using ITS1 sequencing (2 - diploid, 4 - tetraploid)

Congruence(1)/mismatch(0) - congruence (1) or mismatch (0) between morphological and genetic policy estimation

Country of origin

Herbarium

Herbarium coll. number

Collector

Collection year

Locality

Latitude

Longitude


File: Centaurea_stoebe_ITS1_sequences.fasta

Description: This file contains sequences of the obtained ITS1 variants.

File: Centaurea_stoebe_ITS1_sequence_numbers.xlsx

Description: This file contains a table with the numbers of reads in each sample mapping to the obtained ITS1 variants.

Variables



OTU - ITS1 variant number

size - number of sequences from the total data clustered to the variant

next columns contain numbers of reads mapped to each ITS1 variant for each sample


Code/software

The code to process sequence data is included in Centaurea_stoebe_ITS1_script.sh file. The software used was: PEAR v0.9.6, cutadapt v.3.2, vsearch v2.28.