cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3552420
title: Supplement 1. Exploration of conditional importance using a synthetic data set. This document is provided as part of the documentation of the R package extendedForest.

description: File List Conditional-importance.pdf Description This is a vignette from the R package extendedForest, which is available at http://gradientforest.r-forge.r-project.org. The vignette shows the results of a simulation study demonstrating the impact of correlation between predictor variables on determining variable importance and how the conditional permutation method implemented in extendedForest reduces this impact.
DOI: 10.6084/m9.figshare.3552417
title: Supplement 2. Extended analysis of the Great Barrier Reef data set. This document is provided as part of the documentation of the R package gradientForest.

description: File List 1. biodiversity-survey.pdf<br> 2. GZ.phys.site.Rdata<br> 3. GZ.sps.mat.Rdata<br> 4. GZ.phys.grid.Rdata Description1. This is a vignette from the R package gradientForest, which is available at http://gradientforest.r-forge.r-project.org. The vignette demonstrates the use of the gradient forest method for ecological analysis of biodiversity survey data from a region in the far north Great Barrier Reef. The 3 data files used in the vignette are provided as R data files in this supplement. Alternatively, in an R session once the package has been loaded, the data can be made available using the command data(GBRexample). 2. R data file for data frame Phys_site containing 28 environmental predictors at the 197 sample sites. -- TABLE: Please see in attached file. -- 3. R data file for matrix Sp_mat containing log(<i>y</i> + <i>c</i>)-transformed species abundance (where <i>c</i> is the minimum positive abundance <i>y</i>) at the 197 sample sites. 4. R data file for data frame Phys_grid containing the above 28 environmental variables extrapolated onto 8682 locations on a fine-scale 0.01° × 0.01° grid. The variables NORTH and EAST are included so that the predictions can be plotted geographically.
DOI: 10.6084/m9.figshare.3552414
title: Appendix A. Full multivariate model and its justification.

description: Full multivariate model and its justification.
DOI: 10.6084/m9.figshare.3552414.v1
title: Appendix A. Full multivariate model and its justification.

description: Full multivariate model and its justification.
DOI: 10.6084/m9.figshare.3552411
title: Appendix B. Details on the estimation of litter decomposition rates.

description: Details on the estimation of litter decomposition rates.
DOI: 10.6084/m9.figshare.3552411.v1
title: Appendix B. Details on the estimation of litter decomposition rates.

description: Details on the estimation of litter decomposition rates.
DOI: 10.6084/m9.figshare.3552408
title: Appendix C. Details on generalized multilevel path models.

description: Details on generalized multilevel path models.
DOI: 10.6084/m9.figshare.3552408.v1
title: Appendix C. Details on generalized multilevel path models.

description: Details on generalized multilevel path models.
DOI: 10.6084/m9.figshare.3552405
title: Appendix D. Figure showing the relationship between specific leaf area and soil resource availability.

description: Figure showing the relationship between specific leaf area and soil resource availability.
DOI: 10.6084/m9.figshare.3552405.v1
title: Appendix D. Figure showing the relationship between specific leaf area and soil resource availability.

description: Figure showing the relationship between specific leaf area and soil resource availability.
DOI: 10.6084/m9.figshare.3552402
title: Appendix E. Figure showing the relationship between surface soil carbon and soil resource availability.

description: Figure showing the relationship between surface soil carbon and soil resource availability.
DOI: 10.6084/m9.figshare.3552402.v1
title: Appendix E. Figure showing the relationship between surface soil carbon and soil resource availability.

description: Figure showing the relationship between surface soil carbon and soil resource availability.
DOI: 10.6084/m9.figshare.3552399
title: Appendix F. Figure showing the relationship between litter decomposition rate within plots and litter decomposition under standard soil conditions.

description: Figure showing the relationship between litter decomposition rate within plots and litter decomposition under standard soil conditions.
DOI: 10.6084/m9.figshare.3552399.v1
title: Appendix F. Figure showing the relationship between litter decomposition rate within plots and litter decomposition under standard soil conditions.

description: Figure showing the relationship between litter decomposition rate within plots and litter decomposition under standard soil conditions.
DOI: 10.6084/m9.figshare.3552396
title: Appendix G. Figure showing the relationship between ANPP and soil resource availability.

description: Figure showing the relationship between ANPP and soil resource availability.
DOI: 10.6084/m9.figshare.3552393
title: Appendix H. Figure showing that resource availability alters the depth distribution of belowground net primary production (BNPP).

description: Figure showing that resource availability alters the depth distribution of belowground net primary production (BNPP).
DOI: 10.6084/m9.figshare.3552396.v1
title: Appendix G. Figure showing the relationship between ANPP and soil resource availability.

description: Figure showing the relationship between ANPP and soil resource availability.
DOI: 10.6084/m9.figshare.3552393.v1
title: Appendix H. Figure showing that resource availability alters the depth distribution of belowground net primary production (BNPP).

description: Figure showing that resource availability alters the depth distribution of belowground net primary production (BNPP).
DOI: 10.6084/m9.figshare.3552390
title: Appendix A. Derivation of dynamic mixing model accounting for fish growth and shifting isotopic baselines.

description: Derivation of dynamic mixing model accounting for fish growth and shifting isotopic baselines.
DOI: 10.6084/m9.figshare.3552390.v1
title: Appendix A. Derivation of dynamic mixing model accounting for fish growth and shifting isotopic baselines.

description: Derivation of dynamic mixing model accounting for fish growth and shifting isotopic baselines.
DOI: 10.6084/m9.figshare.3552387
title: Appendix B. Bayesian implementation of the dynamic mixing model.

description: Bayesian implementation of the dynamic mixing model.
DOI: 10.6084/m9.figshare.3552387.v1
title: Appendix B. Bayesian implementation of the dynamic mixing model.

description: Bayesian implementation of the dynamic mixing model.
DOI: 10.6084/m9.figshare.3552384
title: Appendix C. Model estimates of instantaneous growth rates, initial δ13C values, and additional information for each fish species from the Lake St. Pierre, Québec, Canada, data set.

description: Model estimates of instantaneous growth rates, initial δ13C values, and additional information for each fish species from the Lake St. Pierre, Québec, Canada, data set.
DOI: 10.6084/m9.figshare.3552384.v1
title: Appendix C. Model estimates of instantaneous growth rates, initial δ13C values, and additional information for each fish species from the Lake St. Pierre, Québec, Canada, data set.

description: Model estimates of instantaneous growth rates, initial δ13C values, and additional information for each fish species from the Lake St. Pierre, Québec, Canada, data set.
DOI: 10.6084/m9.figshare.3552381
title: Appendix D. Literature review reference table.

description: Literature review reference table.
DOI: 10.6084/m9.figshare.3552381.v1
title: Appendix D. Literature review reference table.

description: Literature review reference table.
DOI: 10.6084/m9.figshare.3552378
title: Appendix E. Extension of the dynamic mixing model to incorporate multiple isotopes.

description: Extension of the dynamic mixing model to incorporate multiple isotopes.
DOI: 10.6084/m9.figshare.3552378.v1
title: Appendix E. Extension of the dynamic mixing model to incorporate multiple isotopes.

description: Extension of the dynamic mixing model to incorporate multiple isotopes.
DOI: 10.6084/m9.figshare.3552375
title: Appendix A. Detail of isotopic signatures for control animals and for tracked males vs. females at Crozet, Kerguelen, and Amsterdam.

description: Detail of isotopic signatures for control animals and for tracked males vs. females at Crozet, Kerguelen, and Amsterdam.
DOI: 10.6084/m9.figshare.3552375.v1
title: Appendix A. Detail of isotopic signatures for control animals and for tracked males vs. females at Crozet, Kerguelen, and Amsterdam.

description: Detail of isotopic signatures for control animals and for tracked males vs. females at Crozet, Kerguelen, and Amsterdam.
DOI: 10.6084/m9.figshare.3552372
title: Appendix B. Detail of isotopic signatures for Rockhopper Penguins from Kerguelen that showed divergent dispersion from the colony (northeastward vs. eastward).

description: Detail of isotopic signatures for Rockhopper Penguins from Kerguelen that showed divergent dispersion from the colony (northeastward vs. eastward).
DOI: 10.6084/m9.figshare.3552372.v1
title: Appendix B. Detail of isotopic signatures for Rockhopper Penguins from Kerguelen that showed divergent dispersion from the colony (northeastward vs. eastward).

description: Detail of isotopic signatures for Rockhopper Penguins from Kerguelen that showed divergent dispersion from the colony (northeastward vs. eastward).
DOI: 10.6084/m9.figshare.3552369
title: Appendix C. Overall mass gain for Rockhopper Penguins tracked from each locality.

description: Overall mass gain for Rockhopper Penguins tracked from each locality.
DOI: 10.6084/m9.figshare.3552369.v1
title: Appendix C. Overall mass gain for Rockhopper Penguins tracked from each locality.

description: Overall mass gain for Rockhopper Penguins tracked from each locality.
DOI: 10.6084/m9.figshare.3552366
title: Appendix D. Time spent per water mass of the Southern Ocean for Rockhopper Penguins tracked from each locality.

description: Time spent per water mass of the Southern Ocean for Rockhopper Penguins tracked from each locality.
DOI: 10.6084/m9.figshare.3552366.v1
title: Appendix D. Time spent per water mass of the Southern Ocean for Rockhopper Penguins tracked from each locality.

description: Time spent per water mass of the Southern Ocean for Rockhopper Penguins tracked from each locality.
DOI: 10.6084/m9.figshare.3552363
title: Appendix E. At-sea distribution of Rockhopper Penguins from Kerguelen and Amsterdam during the month of maximal overlap between these two populations.

description: At-sea distribution of Rockhopper Penguins from Kerguelen and Amsterdam during the month of maximal overlap between these two populations.
DOI: 10.6084/m9.figshare.3552363.v1
title: Appendix E. At-sea distribution of Rockhopper Penguins from Kerguelen and Amsterdam during the month of maximal overlap between these two populations.

description: At-sea distribution of Rockhopper Penguins from Kerguelen and Amsterdam during the month of maximal overlap between these two populations.
DOI: 10.6084/m9.figshare.3552360
title: Appendix F. Monthly anomalies in the mean travelling speed of Rockhopper Penguins during the inter-breeding period.

description: Monthly anomalies in the mean travelling speed of Rockhopper Penguins during the inter-breeding period.
DOI: 10.6084/m9.figshare.3552360.v1
title: Appendix F. Monthly anomalies in the mean travelling speed of Rockhopper Penguins during the inter-breeding period.

description: Monthly anomalies in the mean travelling speed of Rockhopper Penguins during the inter-breeding period.
DOI: 10.6084/m9.figshare.3552357
title: Appendix A. Locality map and pictures of two locations at extremes of the water quality gradient.

description: Locality map and pictures of two locations at extremes of the water quality gradient.
DOI: 10.6084/m9.figshare.3552357.v1
title: Appendix A. Locality map and pictures of two locations at extremes of the water quality gradient.

description: Locality map and pictures of two locations at extremes of the water quality gradient.
DOI: 10.6084/m9.figshare.3552354
title: Appendix B. Methods and results of sediment and foraminifera dating.

description: Methods and results of sediment and foraminifera dating.
DOI: 10.6084/m9.figshare.3552354.v1
title: Appendix B. Methods and results of sediment and foraminifera dating.

description: Methods and results of sediment and foraminifera dating.
DOI: 10.6084/m9.figshare.3552351
title: Appendix C. General characteristics of sediments and foraminiferal assemblages of 13 sediment cores from the Whitsunday area of the Great Barrier Reef.

description: General characteristics of sediments and foraminiferal assemblages of 13 sediment cores from the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552351.v1
title: Appendix C. General characteristics of sediments and foraminiferal assemblages of 13 sediment cores from the Whitsunday area of the Great Barrier Reef.

description: General characteristics of sediments and foraminiferal assemblages of 13 sediment cores from the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552348
title: Appendix D. Foraminifera taxa observed in the sediment cores.

description: Foraminifera taxa observed in the sediment cores.
DOI: 10.6084/m9.figshare.3552348.v1
title: Appendix D. Foraminifera taxa observed in the sediment cores.

description: Foraminifera taxa observed in the sediment cores.
DOI: 10.6084/m9.figshare.3552345
title: Appendix E. Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in three zones in the Whitsunday area of the Great Barrier Reef.

description: Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in three zones in the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552345.v1
title: Appendix E. Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in three zones in the Whitsunday area of the Great Barrier Reef.

description: Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in three zones in the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552342
title: Appendix F. Results PERMANOVA posthoc t tests for the interaction term using six age groups and three zones (inner island reefs, intermediate reefs, and reefs fringing outer islands).

description: Results PERMANOVA posthoc t tests for the interaction term using six age groups and three zones (inner island reefs, intermediate reefs, and reefs fringing outer islands).
DOI: 10.6084/m9.figshare.3552339
title: Appendix G. Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in inner and intermediate regions in the Whitsunday area of the Great Barrier Reef.

description: Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in inner and intermediate regions in the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552342.v1
title: Appendix F. Results PERMANOVA posthoc t tests for the interaction term using six age groups and three zones (inner island reefs, intermediate reefs, and reefs fringing outer islands).

description: Results PERMANOVA posthoc t tests for the interaction term using six age groups and three zones (inner island reefs, intermediate reefs, and reefs fringing outer islands).
DOI: 10.6073/pasta/b7cc9644dbe22e6f3e869a6e8b2277bc
title: Monitoring of nutrient and sulfide concentrations in porewaters of mangrove forests from the Shark River Slough and Taylor Slough, Everglades National Park (FCE LTER), South Florida from December 2000 to Present

description: To monitor soil chemistry in the mangrove sites SRS4, SRS5 and SRS6, and TS/Ph6b, TS/Ph7b and TS/Ph8, porewater concentrations of sulfide, PO4, NH4, NO2 and NO3 have been analyzed.
DOI: 10.6084/m9.figshare.3552339.v1
title: Appendix G. Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in inner and intermediate regions in the Whitsunday area of the Great Barrier Reef.

description: Results of similarity percentage (SIMPER) analysis of foraminiferal assemblages in inner and intermediate regions in the Whitsunday area of the Great Barrier Reef.
DOI: 10.6084/m9.figshare.3552336
title: Appendix A. A figure presenting southeastern U.S. region precipitation, temperature, and drought-severity levels in 2009 and 2010.

description: A figure presenting southeastern U.S. region precipitation, temperature, and drought-severity levels in 2009 and 2010.
DOI: 10.6084/m9.figshare.3552336.v1
title: Appendix A. A figure presenting southeastern U.S. region precipitation, temperature, and drought-severity levels in 2009 and 2010.

description: A figure presenting southeastern U.S. region precipitation, temperature, and drought-severity levels in 2009 and 2010.
DOI: 10.6084/m9.figshare.3552333
title: Appendix A. ANOVA table, multiple regression and correlation results for analyses of aboveground biomass.

description: ANOVA table, multiple regression and correlation results for analyses of aboveground biomass.
DOI: 10.6084/m9.figshare.3552333.v1
title: Appendix A. ANOVA table, multiple regression and correlation results for analyses of aboveground biomass.

description: ANOVA table, multiple regression and correlation results for analyses of aboveground biomass.
DOI: 10.6084/m9.figshare.3552330
title: Appendix B. Color figures showing site locations and study species.

description: Color figures showing site locations and study species.
DOI: 10.6084/m9.figshare.3552330.v1
title: Appendix B. Color figures showing site locations and study species.

description: Color figures showing site locations and study species.
DOI: 10.6084/m9.figshare.3552327
title: Appendix C. Site elevations, relationship between flooding and salinity, and productivity.

description: Site elevations, relationship between flooding and salinity, and productivity.
DOI: 10.6084/m9.figshare.3552324
title: Appendix D. Relationship between relative interaction intensity (RII) and salinity or flooding.

description: Relationship between relative interaction intensity (RII) and salinity or flooding.
DOI: 10.6084/m9.figshare.3552327.v1
title: Appendix C. Site elevations, relationship between flooding and salinity, and productivity.

description: Site elevations, relationship between flooding and salinity, and productivity.
DOI: 10.6084/m9.figshare.3552324.v1
title: Appendix D. Relationship between relative interaction intensity (RII) and salinity or flooding.

description: Relationship between relative interaction intensity (RII) and salinity or flooding.
DOI: 10.6084/m9.figshare.3552321
title: Appendix A. Experimental designs.

description: Experimental designs.
DOI: 10.6084/m9.figshare.3552318
title: Appendix B. Algal cover through time.

description: Algal cover through time.
DOI: 10.6084/m9.figshare.3552321.v1
title: Appendix A. Experimental designs.

description: Experimental designs.
DOI: 10.6084/m9.figshare.3552318.v1
title: Appendix B. Algal cover through time.

description: Algal cover through time.
DOI: 10.6084/m9.figshare.3552315
title: Appendix C. Fish effects on early succession.

description: Fish effects on early succession.
DOI: 10.6084/m9.figshare.3552315.v1
title: Appendix C. Fish effects on early succession.

description: Fish effects on early succession.
DOI: 10.6084/m9.figshare.3552312
title: Appendix D. Herbivores diet analyses.

description: Herbivores diet analyses.
DOI: 10.6084/m9.figshare.3552312.v1
title: Appendix D. Herbivores diet analyses.

description: Herbivores diet analyses.
DOI: 10.6084/m9.figshare.3552309
title: Appendix E. Estimated impacts of F. crassa inside and outside ECIM marine reserve.

description: Estimated impacts of F. crassa inside and outside ECIM marine reserve.
DOI: 10.6084/m9.figshare.3552309.v1
title: Appendix E. Estimated impacts of F. crassa inside and outside ECIM marine reserve.

description: Estimated impacts of F. crassa inside and outside ECIM marine reserve.
DOI: 10.6084/m9.figshare.3552306
title: Appendix F. Species composition in Mazzaella-dominated intertidal community and inside experimental plots.

description: Species composition in Mazzaella-dominated intertidal community and inside experimental plots.
DOI: 10.6084/m9.figshare.3552303
title: Appendix G. Results of bootstrap t-test analyses.

description: Results of bootstrap t-test analyses.
DOI: 10.6084/m9.figshare.3552306.v1
title: Appendix F. Species composition in Mazzaella-dominated intertidal community and inside experimental plots.

description: Species composition in Mazzaella-dominated intertidal community and inside experimental plots.
DOI: 10.6084/m9.figshare.3552303.v1
title: Appendix G. Results of bootstrap t-test analyses.

description: Results of bootstrap t-test analyses.
DOI: 10.6084/m9.figshare.3552300
title: Appendix A. A table showing the collection sites for both the live and freeze-dried data sets.

description: A table showing the collection sites for both the live and freeze-dried data sets.
DOI: 10.6084/m9.figshare.3552300.v1
title: Appendix A. A table showing the collection sites for both the live and freeze-dried data sets.

description: A table showing the collection sites for both the live and freeze-dried data sets.
DOI: 10.6084/m9.figshare.3552297
title: Appendix B. A table showing percentage consumption of northern vs. southern congeners for the larger freeze-dried data set.

description: A table showing percentage consumption of northern vs. southern congeners for the larger freeze-dried data set.
DOI: 10.6084/m9.figshare.3552297.v1
title: Appendix B. A table showing percentage consumption of northern vs. southern congeners for the larger freeze-dried data set.

description: A table showing percentage consumption of northern vs. southern congeners for the larger freeze-dried data set.
DOI: 10.6084/m9.figshare.3552294
title: Appendix A. Field sampling methods, rarefaction curves, and detailed information on experimental parasite additions, the final size/counts of host snails, and mesocosm water chemistry.

description: Field sampling methods, rarefaction curves, and detailed information on experimental parasite additions, the final size/counts of host snails, and mesocosm water chemistry.
DOI: 10.6084/m9.figshare.3552291
title: Appendix A. Schematic drawing of experimental set-up for testing.

description: Schematic drawing of experimental set-up for testing.
DOI: 10.6084/m9.figshare.3552288
title: Appendix B. Details of the sound recordings that were used for playback in the acoustic cue experiments.

description: Details of the sound recordings that were used for playback in the acoustic cue experiments.
DOI: 10.6084/m9.figshare.3552285
title: Appendix C. Analysis of the sounds recorded at four different habitats.

description: Analysis of the sounds recorded at four different habitats.
DOI: 10.6084/m9.figshare.3552285.v1
title: Appendix C. Analysis of the sounds recorded at four different habitats.

description: Analysis of the sounds recorded at four different habitats.
DOI: 10.6084/m9.figshare.3552282
title: Appendix A. Hydrologic methods and classification.

description: Hydrologic methods and classification.
DOI: 10.6084/m9.figshare.3552279
title: Appendix B. Life history and hydrologic metric relationships.

description: Life history and hydrologic metric relationships.
DOI: 10.6084/m9.figshare.3552276
title: Appendix A. Threshold fitting rates for each method by sample size, slope of change, and environmental distribution.

description: Threshold fitting rates for each method by sample size, slope of change, and environmental distribution.
DOI: 10.6084/m9.figshare.3552276.v1
title: Appendix A. Threshold fitting rates for each method by sample size, slope of change, and environmental distribution.

description: Threshold fitting rates for each method by sample size, slope of change, and environmental distribution.