cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24633453
title: Additional file 2 of Evidence for widespread existence of functional novel and non-canonical human transcripts

description: Additional file 2: Tables S1-S24. Table S1. Comparison with CRISPR/Cas9 screen on known genes. Table S2. Average TPM. Table S3. Comparison with CRISPR/Cas9 screen on lncRNAs. Table S4. Number of IACFs or non-phenotypic insertions in different genomic elements. Table S5. Clusters generated from simulated positions. Table S6. CACFs obtained from simulated positions. Table S7. Number of CACFs in different genomic elements. Table S8. Odds ratio of IACFs or non-phenotypic insertions in different genomic elements. Table S9. Odds ratio of insertions inside or outside of the CACFs in different genomic elements. Table S10. Conservation scores of the phenotypic vs non-phenotypic insertions based on IACFs or insertions located inside or outside of the CACFs. Table S11. InSETe information. Table S12. InSETT sequencing results summary. Table S13. InSETG sequencing results summary. Table S14. Expression of novel genes (InSETGs) or novel transcripts (InSETTs or InSETes) in normal human tissues and primary cells based on the FANTOM 5 CAGE data. Table S15. Distribution of real and simulated TSS clusters in the genome. Table S16. Number of TSS clusters in the real and simulated data with or without overlapping CAGE tags in at least one human tissue or primary cell sample. Table S17. CAGE signal in real and simulated InSET TSS clusters. Table S18. RT-qPCR analysis of InSETTs and InSETGs. Table S19. RT-qPCR analysis of all InSETTs and InSETGs. Table S20. The log2 cytosol/nucleus ratio of the novel and annotated transcripts of MAML2 and ESYT2. Table S21. RT-PCR primers. Table S22. RACE primers. Table S23. RT-qPCR primers of InSETTs. Table S24. RT-qPCR primers of InSETGs.
DOI: 10.6084/m9.figshare.24633453.v1
title: Additional file 2 of Evidence for widespread existence of functional novel and non-canonical human transcripts

description: Additional file 2: Tables S1-S24. Table S1. Comparison with CRISPR/Cas9 screen on known genes. Table S2. Average TPM. Table S3. Comparison with CRISPR/Cas9 screen on lncRNAs. Table S4. Number of IACFs or non-phenotypic insertions in different genomic elements. Table S5. Clusters generated from simulated positions. Table S6. CACFs obtained from simulated positions. Table S7. Number of CACFs in different genomic elements. Table S8. Odds ratio of IACFs or non-phenotypic insertions in different genomic elements. Table S9. Odds ratio of insertions inside or outside of the CACFs in different genomic elements. Table S10. Conservation scores of the phenotypic vs non-phenotypic insertions based on IACFs or insertions located inside or outside of the CACFs. Table S11. InSETe information. Table S12. InSETT sequencing results summary. Table S13. InSETG sequencing results summary. Table S14. Expression of novel genes (InSETGs) or novel transcripts (InSETTs or InSETes) in normal human tissues and primary cells based on the FANTOM 5 CAGE data. Table S15. Distribution of real and simulated TSS clusters in the genome. Table S16. Number of TSS clusters in the real and simulated data with or without overlapping CAGE tags in at least one human tissue or primary cell sample. Table S17. CAGE signal in real and simulated InSET TSS clusters. Table S18. RT-qPCR analysis of InSETTs and InSETGs. Table S19. RT-qPCR analysis of all InSETTs and InSETGs. Table S20. The log2 cytosol/nucleus ratio of the novel and annotated transcripts of MAML2 and ESYT2. Table S21. RT-PCR primers. Table S22. RACE primers. Table S23. RT-qPCR primers of InSETTs. Table S24. RT-qPCR primers of InSETGs.
DOI: 10.1594/pangaea.397227
title: Water temperature from PALACE float ACL61

description: Data have been checked by the WOCE Subsurface Float Data Assembly Center. See hdl:10013/epic.32931.d001 for further information.
DOI: 10.1594/pangaea.397230
title: Water temperature from PALACE float ACL72

description: Data have been checked by the WOCE Subsurface Float Data Assembly Center. See hdl:10013/epic.32931.d001 for further information.
DOI: 10.1594/pangaea.397236
title: Water temperature from PALACE float ACL78

description: Data have been checked by the WOCE Subsurface Float Data Assembly Center. See hdl:10013/epic.32931.d001 for further information.
DOI: 10.1594/pangaea.920497
title: Continuous water level observations at station BEFmate_S10low (2019-11)
DOI: 10.1594/pangaea.743958
title: (Table 4) Relative abundances of benthic foraminifera in ODP Hole 105-647B
DOI: 10.1594/pangaea.804468
title: (Table 2) Calcareous nannofossil abundance in ODP Hole 164-994C sediments

description: Sediment depth is given in mbsf. Distribution: numbers = calculated percentage in the indigenous flora, figures are rounded off to the nearest whole numbers. &lt;0.5 = few (&gt; 0.1% and &lt; 0.5% of indigenous forms), &lt;0.1 = rare (&lt; 0.1% of indigenous forms), f = few reworked occurrence; r = rare reworked occurrence.
DOI: 10.1594/pangaea.839424
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-04

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.6084/m9.figshare.26739867.v1
title: Additional file 3 of A controlled study of the hygienic technical evaluation of the transaxillary approach for inflation-free single-port lumpectomy versus conventional transcervical anterior open surgery in radical thyroid cancer resection

description: Supplementary Material 3
DOI: 10.1594/pangaea.693372
title: Radiosonde PS71/28153 during POLARSTERN cruise ANT-XXIV/1 on 2007-11-08 10:00h
DOI: 10.1594/pangaea.397237
title: Water temperature from PALACE float ACL79

description: Data have been checked by the WOCE Subsurface Float Data Assembly Center. See hdl:10013/epic.32931.d001 for further information.
DOI: 10.6084/m9.figshare.24633463
title: Additional file 2 of Comprehensive clinicopathological significance and putative transcriptional mechanisms of Forkhead box M1 factor in hepatocellular carcinoma

description: Additional file 2: Table S1.
DOI: 10.6084/m9.figshare.24633463.v1
title: Additional file 2 of Comprehensive clinicopathological significance and putative transcriptional mechanisms of Forkhead box M1 factor in hepatocellular carcinoma

description: Additional file 2: Table S1.
DOI: 10.1594/pangaea.839444
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-11

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.1594/pangaea.679350
title: (Appendix A) Size-related isotopic trends in the Maastrichtian planktic foraminifera Pseudoguembelina palpebra of DSDP Core 44-390A
DOI: 10.1594/pangaea.679348
title: (Appendix A) Size-related isotopic trends in the Maastrichtian planktic foraminifera Planoglobulina acervulinoides of DSDP Core 44-390A
DOI: 10.1594/pangaea.792909
title: (Appendix A) Coarse- and fine-fraction at DSDP Holes 89-586 and 90-591
DOI: 10.1594/pangaea.839439
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-19

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.6084/m9.figshare.24633466
title: Additional file 2 of Evidence of malarial chemoprophylaxis among travellers who died from malaria: a systematic review and meta-analysis

description: Additional file 2. Table S2.
DOI: 10.6084/m9.figshare.24633466.v1
title: Additional file 2 of Evidence of malarial chemoprophylaxis among travellers who died from malaria: a systematic review and meta-analysis

description: Additional file 2. Table S2.
DOI: 10.1594/pangaea.915639
title: Continuous sediment temperature observations at station BEFmate_I3Upp (2019-02)
DOI: 10.1594/pangaea.819640
title: Nutrient concentrations along a North-South transect in the North Atlantic measured during Maria S. Merain cruise MSM03/1 (VISION) cruise

description: Samples were taken along a transect in the North Atlantic Ocean from 66°139.27'N; 29°136.65'W to 34°124.87'N; 28°128.90'W during the VISION cruise (diVersIty, Structure and functION) MSM03/01 on board the research vessel Maria S. Merian from September 21 to September 30, 2006. Along this transect, each station was sampled at 12 depths, from 10m down to 250m or 500m. Samples were collected with a rosette of 20-l Niskin bottles mounted on a conductivity-temperature-density profiler. Water samples for nutrients analysis were filtered directly after sampling through 0.45-µm in-line filters attached to a 60-ml pre-cleaned syringe into two 12-ml polystyrole tubes. Samples were stored at 4°C (dissolved silicate) or 80°C (ammonium, phosphate, nitrate and nitrite) The samples were spectrophotometrically measured with a continuous-flow analyzer using standard AA3 methods (Seal Analytical, Norderstedt, Germany) using a variant of the method of Grasshoff et al. (1983).
description: Supplement to: Gomez-Pereira, Paola R; Fuchs, Bernhard M; Alonso, Cecilia; Oliver, Matthew J; van Beusekom, Justus; Amann, Rudolf (2010): Distinct flavobacterial communities in contrasting water masses of the North Atlantic Ocean. The ISME Journal, 4(4), 472-487
DOI: 10.1594/pangaea.839432
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-12

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.1594/pangaea.815325
title: (Table 1) Textural characteristics of sediments at DSDP Leg 71 Holes

description: In conjunction with a study of ice-rafted detritus (IRD), textural analyses were carried out on Miocene to Quaternary sediments at Sites 511, 512, 513, and 514. Grain-size statistics were computed for the &lt;62.5 µm fraction in order to identify changes in current velocity; the sand fraction was omitted from these determinations because it consists primarily of ice-raft and biogenic components. The contributions by terrigenous sediment in the 62.5-250 µm and the &gt;250 µm fractions were determined.
description: Supplement to: Bornhold, Brian D (1983): Appendix I. Detailed textural analyses of Miocene to Quaternary sediments, Leg 71. In: Ludwig, WJ; Krasheninnikov, VA; et al. (eds.), Initial Reports of the Deep Sea Drilling Project (U.S. Govt. Printing Office), 71, 1183-1184
DOI: 10.1594/pangaea.839435
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-15

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.1594/pangaea.902711
title: (Table S06) Alignment tie-points for sediment core SU90-08

description: The SST records from original publications were aligned to NGRIP ice δ18O (Andersen et al., 2006; Rasmussen et al., 2006; Svensson et al., 2006; Vinther et al., 2006) using the AnalySerie software (Paillard et al., 1996).
DOI: 10.1594/pangaea.817715
title: Global distributions of diazotrophs nitrogen fixation rates - Depth integrated values computed from a collection of source datasets - Contribution to the MAREDAT World Ocean Atlas of Plankton Functional Types

description: The MAREDAT atlas covers 11 types of plankton, ranging in size from bacteria to jellyfish. Together, these plankton groups determine the health and productivity of the global ocean and play a vital role in the global carbon cycle. Working within a uniform and consistent spatial and depth grid (map) of the global ocean, the researchers compiled thousands and tens of thousands of data points to identify regions of plankton abundance and scarcity as well as areas of data abundance and scarcity. At many of the grid points, the MAREDAT team accomplished the difficult conversion from abundance (numbers of organisms) to biomass (carbon mass of organisms). The MAREDAT atlas provides an unprecedented global data set for ecological and biochemical analysis and modeling as well as a clear mandate for compiling additional existing data and for focusing future data gathering efforts on key groups in key areas of the ocean.The present data set presents depth integrated values of diazotrophs nitrogen fixation rates, computed from a collection of source data sets.
description: Supplement to: Luo, Yawei; Doney, Scott C; Anderson, L A; Benavides, Mar; Berman-Frank, I; Bode, Antonio; Bonnet, S; Boström, Kjärstin H; Böttjer, D; Capone, D G; Carpenter, E J; Chen, Yaw-Lin; Church, Matthew J; Dore, John E; Falcón, Luisa I; Fernández, A; Foster, R A; Furuya, Ken; Gomez, Fernando; Gundersen, Kjell; Hynes, Annette M; Karl, David Michael; Kitajima, Satoshi; Langlois, Rebecca; LaRoche, Julie; Letelier, Ricardo M; Marañón, Emilio; McGillicuddy Jr, Dennis J; Moisander, Pia H; Moore, C Mark; Mouriño-Carballido, Beatriz; Mulholland, Margaret R; Needoba, Joseph A; Orcutt, Karen M; Poulton, Alex J; Rahav, Eyal; Raimbault, Patrick; Rees, Andrew; Riemann, Lasse; Shiozaki, Takuhei; Subramaniam, Ajit; Tyrrell, Toby; Turk-Kubo, Kendra A; Varela, Manuel; Villareal, Tracy A; Webb, Eric A; White, Angelicque E; Wu, Jingfeng; Zehr, Jonathan P (2012): Database of diazotrophs in global ocean: abundance, biomass and nitrogen fixation rates. Earth System Science Data, 4, 47-73
DOI: 10.1594/pangaea.915715
title: Continuous sediment temperature observations at station BEFmate_S3Low (2019-03)
DOI: 10.1594/pangaea.693186
title: Radiosonde PS69/27468 during POLARSTERN cruise ANT-XXIII/10 on 2007-04-22 22:15h

description: Height of tropopause 16165 m, precipitable water content 3.0373 cm
DOI: 10.1594/pangaea.693191
title: Radiosonde PS69/27473 during POLARSTERN cruise ANT-XXIII/10 on 2007-04-28 10:29h

description: Height of tropopause 12462 m, precipitable water content 1.4314 cm
DOI: 10.1594/pangaea.819536
title: Physical oceanography measured in the North Atlantic during Maria S. Merian cruise MSM26, spring 2013
DOI: 10.1594/pangaea.803645
title: (Table 5) Stable carbon isotope ratios of dissolved inorganic carbon from pore waters of ODP Leg 164 sites
DOI: 10.6084/m9.figshare.24633270
title: Additional file 1 of Investigation of the response of Platycodongrandiflorus (Jacq.) A. DC to salt stress using combined transcriptomics and metabolomics

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24633270.v1
title: Additional file 1 of Investigation of the response of Platycodongrandiflorus (Jacq.) A. DC to salt stress using combined transcriptomics and metabolomics

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24634561
title: Additional file 2 of Role of hypermethylated SLC5A8 in follicular thyroid cancer diagnosis and prognosis prediction

description: Additional file 2.
DOI: 10.6084/m9.figshare.24634561.v1
title: Additional file 2 of Role of hypermethylated SLC5A8 in follicular thyroid cancer diagnosis and prognosis prediction

description: Additional file 2.
DOI: 10.5065/d6kk991n
title: Toolik Snowfence Experiment: Snow Free Date Data. Version 1.0

description: This dataset contains the snow free date for all plots monitored in conjunction with the Toolik Snow Fence Experiment. For more information, see the readme file.
DOI: 10.5065/d6fx77nb
title: US Toolik Site 1, Biomass Community Data. Version 1.0

description: This dataset contains reduced vegetative community data produced for the ITEX Community Synthesis Workshop. For more information, please see the readme file.
DOI: 10.7910/dvn/wvmt74
title: Leveraging feedback mechanisms to improve the quality of objective structured clinical examinations in Singapore: an exploratory action research study

description: Variability in examiner scoring threatens the fairness and reliability of objective structured clinical examinations (OSCEs). While examiner standardization exists, there is currently no structured, psychometric-informed, individualized feedback mechanism for examiners. This study explored the feasibility and perceived value of such a mechanism using an action research approach to co-design and iteratively refine examiner feedback reports. Two exploratory cycles were conducted between November 2023 and June 2024 with phase 4 OSCE examiners at the Yong Loo Lin School of Medicine. In cycle 1, psychometric analyses of examiner scoring for a phase 4 OSCE informed the design of individualized reports, which were evaluated through interviews. Revisions were made to the format of the report and implemented in cycle 2, where examiner responses were again collected. Data were analyzed thematically, supported by reflective logs and field notes.
DOI: 10.5065/d6b56gzc
title: Summary Files From Boulder Workshop, gur-hedge data. Version 1.0

description: This dataset contains hedge data from both terrestrial and marine ecosystems. These are summary data from the Boulder Workshop, 2001.
DOI: 10.15468/dl.8ckka9
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Piper betle",
 "Country is Comoros",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035239-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6069/ky8k-8720
title: Blood-based Diagnostics of Pediatric Tuberculosis: A Prospective Case-controlled Study

description: Background Pediatric tuberculosis (TB) diagnosis is often challenging due to difficultly obtaining diagnostic respiratory specimens, which may contain low concentrations of Mycobacterium tuberculosis (Mtb) bacilli. However, we have reported that an immuno-affinity liquid chromatography-tandem mass spectrometry TB assay (ILM-TB) that detects a peptide derived from Mtb 10-kDa culture filtrate protein (CFP10pep) can diagnose TB regardless of patient age or infection site when analyzing trypsin-digested blood samples.
Methods Discovery and validation cohorts were respectively generated from children who consecutively presented at two hospitals in South Africa (SA) from April 2012 to August 2017 (157 children <13 years-of-age) or at two communities in the Dominican Republic (DR) from July 2019 to May 2023 (101 children <17 years-of-age). All children were evaluated for TB at enrollment and 6-months post-enrollment, and assigned confirmed, unconfirmed, or unlikely TB diagnoses based on the 2015 NIH criteria for pediatric TB. Serum samples were collected at and two and six months after SA/DR enrollment, and at two weeks DR post-enrollment (270 SA and 304 DR samples) to evaluate ILM-TB assay performance.
Findings SA and DR serum ILM-TB results had comparable sensitivity (82·9% and 84·4%) to respiratory culture and Xpert for confirmed TB, and robust sensitivity (80·5% and 76·5%) for unconfirmed TB, with differential specificity for unlikely TB cases with and without TB consistent symptoms (78·4–98·1%). CFP10pep levels decreased by six months post-treatment initiation only in children with positive treatment responses. 
Interpretation Serum CFP10pep detection can effectively diagnose pediatric TB, including unconfirmed and extrapulmonary TB cases missed by sputum-based methods, while decreases after treatment anti-TB treatment initiation can monitoring effective treatment responses.
DOI: 10.15468/dl.62nh9z
title: Occurrence Download

description: A dataset containing 476186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chenopodium album)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 476186 records from 2856 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035214-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s5zbbr
title: Occurrence Download

description: A dataset containing 2220 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "StateProvince is Tlaxcala",
 "TaxonKey is Coleoptera"
 ]
}

 The dataset includes 2220 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069493-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqp53f
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erica flocciflora Benth."
 ]
}

 The dataset includes 34 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043689-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xjp7cc
title: Occurrence Download

description: A dataset containing 2740 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fraxinus nigra Marshall"
 ]
}

 The dataset includes 2740 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003676-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dep9jp
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crassula papillosa Schönland & Baker fil."
 ]
}

 The dataset includes 37 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010477-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ukcbdy
title: Occurrence Download

description: A dataset containing 487776 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is United States of America",
 "DatasetKey is one of (EOD – eBird Observation Dataset, Great Backyard Bird Count, iNaturalist Research-grade Observations, USGS GAP - Alaska - Vertebrates - 1867-2009, USGS PWRC - Bird Phenology Program, Point Reyes Bird Observatory - Point Counts, Field Museum of Natural History (Zoology) Bird Collection, USGS Patuxent Wildlife Research Center Seabirds Compendium, MVZ Bird Collection (Arctos), MVZ Bird Observations (Arctos))",
 "HasCoordinate is true",
 "TaxonKey is Clangula hyemalis (Linnaeus, 1758)"
 ]
}

 The dataset includes 487776 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0043680-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqtbsy
title: Occurrence Download

description: A dataset containing 4750 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex adelostoma V.I.Krecz."
 ]
}

 The dataset includes 4750 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009504-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.