cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10684337
title: CUPiD: A cfDNA methylation-based tissue-of-origin classifier for Cancers of Unknown Primary - figure generation data and code

description: This repository holds code behind the article "A cfDNA methylation-based tissue-of-origin classifier for Cancers of Unknown Primary" by Conway, Pearce, Clipson et al, published in Nature Communications. This contains the code and data required to regenerate all the figures in the paper.

The code is structured as follows:



figure_inputs: Inputs required to generate the figures. Some of these are generated as part of the classifier generation/application process, some are additional clinical data. 

figure_generation: RMarkdown reports to generate the figures in the paper, given all the inputs in figures_inputs. These are separate RMarkdown files, and should be self-contained, and are able to be ran directly based on the files within `figure_inputs`. They may be ran in any order, except that CUP_mutation_analysis should be ran after CUPiD_cfDNA_application.


The code will generate outputs in two folders, one called output and one called source_data; these are provided here for completeness. The source_data folder contains data for Nature Communications Source Data files, including data behind the ROC curves that are too large to be included there, while the output folder generates supplementary data tables and copies of the plots.

Data and code to generate the classifier is available upon request from https://zenodo.org/uploads/10678015.
DOI: 10.25549/pcra-c14-234026
title: Three keys to success, [s.d.]

description: [description english/roman)] S.E. Mitchell. Three keys to success, [s.d.].
DOI: 10.15468/dl.dvek79
title: Occurrence Download

description: A dataset containing 6803338 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 6803338 records from 4146 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332428-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.1553
title: Multispectral Imaging Data from Samples for Research Project: "Quantitative Monitoring of Works of Art on Paper With Imaging Spectroscopy"

description: The goal of this research is the investigation of potentials and limits of UV-VIS-NIR Hyperspectral Imaging (HSI) and Multispectral Imaging (MSI) for the non-destructive quantitative monitoring of spectral changes that occurs in historical papers and writing media during exhibitions at the Rijksmuseum.

Four spectral imaging instruments in Europe have been tested using the same set of samples collected from original discarded papers of the Rijksmuseum and reference targets.  

The samples include: an historical blue paper, a light sensitive pastel, papers with foxing and metal intrusions,  a sanguine (red chalk) and the Blue Wool Standard grade 1.

Data presented here is part of the research and is the Multispectral imaging data captured using the Multispectral imaging system of the Centre for the Study of Manuscript Cultures in Hamburg.

Imaging was performed on 07-08.12.2016
description: The research for project Z01 was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg, in collaboration with the Migelien Gerritzen Fund/Rijksmuseum Fund.
description: {"references": ["https://de.slideshare.net/rijksmuseum/23d-photography-2017-p-3-quantitative-monitoring-of-works-of-art-on-paper-with-spectral-imaging-roberto-padoan"]}
DOI: 10.25592/uhhfdm.1552
title: Multispectral Imaging Data from Samples for Research Project: "Quantitative Monitoring of Works of Art on Paper With Imaging Spectroscopy"

description: The goal of this research is the investigation of potentials and limits of UV-VIS-NIR Hyperspectral Imaging (HSI) and Multispectral Imaging (MSI) for the non-destructive quantitative monitoring of spectral changes that occurs in historical papers and writing media during exhibitions at the Rijksmuseum.

Four spectral imaging instruments in Europe have been tested using the same set of samples collected from original discarded papers of the Rijksmuseum and reference targets.  

The samples include: an historical blue paper, a light sensitive pastel, papers with foxing and metal intrusions,  a sanguine (red chalk) and the Blue Wool Standard grade 1.

Data presented here is part of the research and is the Multispectral imaging data captured using the Multispectral imaging system of the Centre for the Study of Manuscript Cultures in Hamburg.

Imaging was performed on 07-08.12.2016
description: The research for project Z01 was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg, in collaboration with the Migelien Gerritzen Fund/Rijksmuseum Fund.
description: {"references": ["https://de.slideshare.net/rijksmuseum/23d-photography-2017-p-3-quantitative-monitoring-of-works-of-art-on-paper-with-spectral-imaging-roberto-padoan"]}
DOI: 10.6084/m9.figshare.30454586.v2
title: Source Data for SSLinker Nanoparticles

description: We have designed nanoparticle vaccines by displaying stabilized coronavirus stem on self-assembling nanoparticle platform using unorthodox Linkers. These nanoparticles elicited broader immune responses compared to coronavirus stem alone.
DOI: 10.5281/zenodo.17742737
title: Low-Latitude Ionospheric Disturbances Over Two Sectors of South America During 10–11 October 2024 Super Geomagnetic Storm

description: We analysed ground-based measurements (GPS-TEC, ionosondes, and magnetometers) combined with space-based observations (SWARM and GUVI) to investigate equatorial electrodynamics and low-latitude plasma distribution over the South American region during the 10–11 October 2024 geomagnetic storm (Sym-H ~ –350 nT). During the main phase (10 October, 16:12 UT–11 October, 01:45 UT), the equatorial electrojet (EEJ) over the Brazil/east (55°W) and Peru/west (75°W) sectors intensified by ~350 and 300 nT, respectively, and persisted for ~1.5 hours. This indicates strong prompt-penetration electric field perturbations. The enhanced eastward electric field produced a daytime super plasma fountain across both sectors. During the recovery phase, totla electron content (TEC) along the eastern sector showed markedly stronger depletion compared to western sector, associated with counter-electrojets and a reduced O/N₂ ratio in the east region. The EIA crests in the eastern sector remained depleted for about 8 hours, corroborating with in-situ electron density measurements from SWARM. In addition, Ionosonde observations from Araguatins (dip latitude: 6.2°S), Jataí (14.7°S), and São José dos Campos (22.2°S) revealed that the F layer rose from the evening hours on 10 October and remained elevated until 09:00 UT/06:00 LT on 11 October across all three stations. Spread-F over Araguatins developed at ~23:00 UT on 10 October and persisted until ~09:30 UT on 11 October. The 10-hour duration of Spread-F was facilitated by the continuous uplift of the F region throughout the night
DOI: 10.5281/zenodo.17742738
title: Low-Latitude Ionospheric Disturbances Over Two Sectors of South America During 10–11 October 2024 Super Geomagnetic Storm

description: We analysed ground-based measurements (GPS-TEC, ionosondes, and magnetometers) combined with space-based observations (SWARM and GUVI) to investigate equatorial electrodynamics and low-latitude plasma distribution over the South American region during the 10–11 October 2024 geomagnetic storm (Sym-H ~ –350 nT). During the main phase (10 October, 16:12 UT–11 October, 01:45 UT), the equatorial electrojet (EEJ) over the Brazil/east (55°W) and Peru/west (75°W) sectors intensified by ~350 and 300 nT, respectively, and persisted for ~1.5 hours. This indicates strong prompt-penetration electric field perturbations. The enhanced eastward electric field produced a daytime super plasma fountain across both sectors. During the recovery phase, totla electron content (TEC) along the eastern sector showed markedly stronger depletion compared to western sector, associated with counter-electrojets and a reduced O/N₂ ratio in the east region. The EIA crests in the eastern sector remained depleted for about 8 hours, corroborating with in-situ electron density measurements from SWARM. In addition, Ionosonde observations from Araguatins (dip latitude: 6.2°S), Jataí (14.7°S), and São José dos Campos (22.2°S) revealed that the F layer rose from the evening hours on 10 October and remained elevated until 09:00 UT/06:00 LT on 11 October across all three stations. Spread-F over Araguatins developed at ~23:00 UT on 10 October and persisted until ~09:30 UT on 11 October. The 10-hour duration of Spread-F was facilitated by the continuous uplift of the F region throughout the night
DOI: 10.26093/cds/vizier.51500027
title: New catalog of variable stars in M37 field

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal with title ' A new catalog of variable stars in the field of the open cluster M37.' (bibcode: 2015AJ....150...27C)
DOI: 10.25592/uhhfdm.9170
title: Multispectral Imaging Data of the Threse, B 15 a, Bibliothek des Staatsarchives, Hamburg

description: Multispectral Imaging data of the Threse, B 15 a, Bibliothek des Staatsarchives, Hamburg

Captured on 14-16.06.2016

Results presented to the mayor of Hamburg and the members of Senate on 23.06.2016

 
description: The research for this project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
description: {"references": ["10.3204/DESY-PROC-2018-01", "https://www.researchgate.net/publication/343230234_MULTISPECTRAL_IMAGING_AND_X-RAY_FLUORESCENCE_IN_INK_ANALYSIS_AND_RECOVERY_OF_LOST_WRITING"]}
DOI: 10.25592/uhhfdm.9169
title: Multispectral Imaging Data of the Threse, B 15 a, Bibliothek des Staatsarchives, Hamburg

description: Multispectral Imaging data of the Threse, B 15 a, Bibliothek des Staatsarchives, Hamburg

Captured on 14-16.06.2016

Results presented to the mayor of Hamburg and the members of Senate on 23.06.2016

 
description: The research for this project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
description: {"references": ["10.3204/DESY-PROC-2018-01", "https://www.researchgate.net/publication/343230234_MULTISPECTRAL_IMAGING_AND_X-RAY_FLUORESCENCE_IN_INK_ANALYSIS_AND_RECOVERY_OF_LOST_WRITING"]}
DOI: 10.15468/dl.4mke3b
title: Occurrence Download

description: A dataset containing 8975 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arnica cordifolia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8975 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014585-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.9172
title: Multispectral Imaging Data and Beamtime Data of Samples Analysed During the P06 Beamtime at PETRA, DESY

description: Parchment and papyrus samples were multispectrally imaged after a beamtime at beamline P06 at PETRA III at DESY.

One of the parchment samples showed a visible relaxation after irradiation with X-Rays.

This relaxation is documented over time using the Megavision E7 MSI system and compared with others.

Samples were irradiated with 18keV and at 7.2keV at the beamline P06 at PETRA III at DESY.

Imaging was performed on 4th of October 2016.

Beamtime data is included in this upload
description: The research for project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.9171
title: Multispectral Imaging Data and Beamtime Data of Samples Analysed During the P06 Beamtime at PETRA, DESY

description: Parchment and papyrus samples were multispectrally imaged after a beamtime at beamline P06 at PETRA III at DESY.

One of the parchment samples showed a visible relaxation after irradiation with X-Rays.

This relaxation is documented over time using the Megavision E7 MSI system and compared with others.

Samples were irradiated with 18keV and at 7.2keV at the beamline P06 at PETRA III at DESY.

Imaging was performed on 4th of October 2016.

Beamtime data is included in this upload
description: The research for project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.8971
title: Multispectral Imaging Data of Manuscripts Ms. Bos. q. 19, Ms. El. f. 83, Ms. El. f. 84, Ms. El. f. 87, and a Letter Aut. W. M. v. Goethe 486b collected at the Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena

description: Multispectral Imaging Data of following objects owned by the Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena:

 

Manuscripts:

Ms. Bos. q. 19

Ms. El. f. 83

Ms. El. f. 84

Ms. El. f. 87

 

Letter:

Aut. W. M. v. Goethe 486b

 

Links to Publications:

Thomas J. H. McCarthy, The continuations of Frutolf of Michelsberg's Chronicle

Die Bamberger Weltchronistik des 11./ 12. Jahrhunderts

Die MGH und das Hamburger "Centre for the Study of Manuscript Cultures"

 

Links to digital copies:

Ms. Bos. q. 19<br>
Ms. El. f. 83 <br>
Ms. El. f. 84<br>
Ms. El. f. 87

Multispectral Imaging was performed during 14-18th of February 2016 at Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena. 

Operators: Damianos Kasotakis and Ivan Shevchuk

Image Processing: Damianos Kasotakis
description: The research for project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.8970
title: Multispectral Imaging Data of Manuscripts Ms. Bos. q. 19, Ms. El. f. 83, Ms. El. f. 84, Ms. El. f. 87, and a Letter Aut. W. M. v. Goethe 486b collected at the Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena

description: Multispectral Imaging Data of following objects owned by the Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena:

 

Manuscripts:

Ms. Bos. q. 19

Ms. El. f. 83

Ms. El. f. 84

Ms. El. f. 87

 

Letter:

Aut. W. M. v. Goethe 486b

 

Links to Publications:

Thomas J. H. McCarthy, The continuations of Frutolf of Michelsberg's Chronicle

Die Bamberger Weltchronistik des 11./ 12. Jahrhunderts

Die MGH und das Hamburger "Centre for the Study of Manuscript Cultures"

 

Links to digital copies:

Ms. Bos. q. 19<br>
Ms. El. f. 83 <br>
Ms. El. f. 84<br>
Ms. El. f. 87

Multispectral Imaging was performed during 14-18th of February 2016 at Thüringer Universitäts- und Landesbibliothek (ThULB) in Jena. 

Operators: Damianos Kasotakis and Ivan Shevchuk

Image Processing: Damianos Kasotakis
description: The research for project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Sonderforschungsbereich 950 (SFB 950). The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.14701
title: MSI data of Tibetan initiation cards from the Zhangzhung Nyengyu tsakali collection

description: The object of study is the set of 65 Tibetan initiation cards (<em>tsakali</em>) belonging to the Bon religion. The cards are made of paper, each measuring 9.4 cm in width × 20.2 cm in height. On the recto side they bear the polychrome image of a divinity, a saint, or a sacred object, and on the verso a passage of text of varying length citing a scripture related to the corresponding image. These <em>tsakalis</em> are used in initiation rituals to empower neophytes into the particular domain of religion they represent.

 

The MSI data:

Images in preview are compressed and of lower quality. They are mainly intended to serve as thumbnails. Original hiqh quality TIF images can be found in the Color and PROCESSED folder below (zip file). For information about filenames and folderstructure as well as MSI system related info, please read the "Brief Description of Datasets for Multispectral Imaging". 
description: The research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.14700
title: MSI data of Tibetan initiation cards from the Zhangzhung Nyengyu tsakali collection

description: The object of study is the set of 65 Tibetan initiation cards (<em>tsakali</em>) belonging to the Bon religion. The cards are made of paper, each measuring 9.4 cm in width × 20.2 cm in height. On the recto side they bear the polychrome image of a divinity, a saint, or a sacred object, and on the verso a passage of text of varying length citing a scripture related to the corresponding image. These <em>tsakalis</em> are used in initiation rituals to empower neophytes into the particular domain of religion they represent.

 

The MSI data:

Images in preview are compressed and of lower quality. They are mainly intended to serve as thumbnails. Original hiqh quality TIF images can be found in the Color and PROCESSED folder below (zip file). For information about filenames and folderstructure as well as MSI system related info, please read the "Brief Description of Datasets for Multispectral Imaging". 
description: The research was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.15468/dl.quj5a7
title: Occurrence Download

description: A dataset containing 398 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Melinis minutiflora"
 ]
}

 The dataset includes 398 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014586-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25592/uhhfdm.14369
title: Multispectral data for faded and illegible specimen labels at the Natural History Museum (CeNak) of the University of Hamburg

description: Multispectral dataset recovering faded and illegible text on specimen labels at the Natural History Museum (CeNak) of the University of Hamburg. The analyzed specimen labels were for an Argonauta, Isopeda immanis, Octopus vulgars, and Pachycephala, and an additional three white labels. Dataset contains raw image data as well as processed images.

Images in preview are compressed and of lower quality. They are mainly intended to serve as thumbnails. Original hiqh quality TIF images can be found in the Color and PROCESSED folder below (zip file). For information about filenames and folderstructure as well as MSI system related info, please read the "Brief Description of Datasets for Multispectral Imaging."
description: The research for this project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.25592/uhhfdm.14368
title: Multispectral data for faded and illegible specimen labels at the Natural History Museum (CeNak) of the University of Hamburg

description: Multispectral dataset recovering faded and illegible text on specimen labels at the Natural History Museum (CeNak) of the University of Hamburg. The analyzed specimen labels were for an Argonauta, Isopeda immanis, Octopus vulgars, and Pachycephala, and an additional three white labels. Dataset contains raw image data as well as processed images.

Images in preview are compressed and of lower quality. They are mainly intended to serve as thumbnails. Original hiqh quality TIF images can be found in the Color and PROCESSED folder below (zip file). For information about filenames and folderstructure as well as MSI system related info, please read the "Brief Description of Datasets for Multispectral Imaging."
description: The research for this project was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy – EXC 2176 'Understanding Written Artefacts: Material, Interaction and Transmission in Manuscript Cultures', project no. 390893796. The research was conducted within the scope of the Centre for the Study of Manuscript Cultures (CSMC) at Universität Hamburg.
DOI: 10.6084/m9.figshare.30447506.v1
title: Source Data

description: We have designed multiclade coronavirus spike immunodominant domain nanoparticle vaccine candidates that elicit broad immunity against multiple coronaviruses.
DOI: 10.5683/sp3/4nks4h
title: Replication Data for: Optimizing the membrane composition of immobilized giant vesicles for effective entrapment and observation of motile bacteria

description: This dataset can be used to replicate the results found in the article "Optimizing the membrane composition of immobilized giant vesicles for effective entrapment and observation of motile bacteria."
A folder called the "Entrapment Efficiency" is a set of videos used to calculate how efficiently giant vesicles entrap motile bacteria AMB-1. Individual AMB-1 bacteria were counted in each video and an efficiency of bacteria trapped per area was calculated. The second is the "Lipid Mixture Spectra Data" which is spectrophotometry data of Laurdan, a lipophilic dye that reports on membrane order in the created giant vesicles. Using these spectra, one can calculate the generalized polarization of the different vesicles, which is an approximation of the membrane order in the vesicles. All .CZI files are able to opened with FIJI.
description: Replication data for systematic lipid mixture entrapment efficiencies and spectrophotometry data collected for the generalized polarization on lipid mixtures.
DOI: 10.15468/dl.5v9aab
title: Occurrence Download

description: A dataset containing 1104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chioglossa lusitanica"
 ]
}

 The dataset includes 1104 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014587-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.