cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27024721.v4
title: <i>Litoditis marina</i> microbes

description: Nematodes are the most abundant metazoans in marine sediments, many of which are bacterivores, however how habitat bacteria affect physiological outcomes in marine nematodes remains largely unknown. Here, we used a <i>Litoditis marina</i> inbred line to assess how native bacteria modulate host nematode physiology. We characterized seasonal dynamic bacterial compositions in <i>L. marina</i> habitats, and examined the impacts of 448 habitat bacteria isolates on <i>L. marina</i> development, then focused on HQbiome with 73 native bacteria, of which we generated 72 whole genomes sequences. Unexpectedly, we found that the effects of marine native bacteria on the development of <i>L. marina</i> and its terrestrial relative<i>Caenorhabditis</i><i> </i><i>elegans</i> were significantly positively correlated. Next, we reconstructed bacterial metabolic networks and identifiedseveral bacterial metabolic pathways positively correlated with <i>L. marina</i> development (e.g., ubiquinol and heme <i>b</i> biosynthesis), while pyridoxal 5’-phosphate biosynthesis pathway was negatively associated. Through single metabolite supplementation, we verified CoQ<sub>10</sub>, heme <i>b</i>, acetyl-CoA, and acetaldehyde promoted <i>L. marina</i> development, while vitamin B6 attenuated growth. Notably, we found that only four development correlated metabolic pathways were shared between <i>L. marina</i> and <i>C. elegans</i>.Furthermore, we identified two bacterial metabolic pathways correlated with <i>L. marina</i> lifespan, while a distinct one in <i>C. elegans</i>. Strikingly, we found that glycerol supplementation significantly extended <i>L. marina</i> but not <i>C. elegans</i> longevity. Moreover, we comparatively demonstrated the distinct gut microbiota characteristics and their effects on <i>L. marina</i> and <i>C</i><i>.</i><i> </i><i>elegans</i><i> </i>physiology. Given that both bacteria and marine nematodes are dominant taxa in sedimentary ecosystems, the resource presented here will provide novel insights to identify mechanisms underpinning how habitat bacteria affect nematode biology in a more natural context. Our integrative approach will provide a microbe–nematodes framework for microbiome mediated effects on host animal fitness.
DOI: 10.6084/m9.figshare.29097242.v1
title: Bhopal children Data Set

description: This dataset supports a cross-sectional study examining the impact of neighborhood green space accessibility, park-based physical activity, dietary behavior, and sociodemographic factors on childhood obesity in Bhopal, India. Data were collected from 386 school-aged children (aged 9–14 years) across diverse income groups using structured questionnaires and GIS-based spatial analysis. Variables include BMI, distance to green spaces, frequency and intensity of park visits (including MET-based scoring), and detailed dietary behavior responses. The dataset facilitates urban health research and supports planning interventions aimed at combating childhood obesity in rapidly urbanizing Indian cities.
DOI: 10.6084/m9.figshare.12551261.v1
title: Data and Script for Puerto Rico Social Power Projects

description: Data to measure the social vulnerability and political dynamics of power restoration post-Hurricane Maria
DOI: 10.6084/m9.figshare.13335548.v5
title: geneMatrix

description: Data on genes, GENCODE V45 gene models with ~100 annotations per gene. With readme. Updated 03/2024.
DOI: 10.6084/m9.figshare.22283929.v1
title: TsaC/Sua5 Evolution

description: Deposit contains sequences and/or accession numbers, alignments and phylogenetic trees reported in the accompanying paper. <br> <br>
DOI: 10.6084/m9.figshare.9942857.v1
title: HIV adherence dataset for Figshare AIDs CARE.sav

description: Dataset for an online study investigating the potentially important role of psychological flexibility in adherence to antiretroviral therapy in people living with HIV.
DOI: 10.17632/gkz9x4dwjd
title: Barro-Lee Educational Attainment Data

description: The Barro-Lee Data set provides educational attainment data in 5-year intervals from 1950 to 2010. It also provides information about the distribution of educational attainment of the adult population over age 15 and over age 25 by sex at seven levels of schooling— no formal education, incomplete primary, complete primary, lower secondary, upper secondary, incomplete tertiary, and complete tertiary.
DOI: 10.6084/m9.figshare.12311630.v1
title: PLdata.csv

description: Paper.ID. # Paper IdentifierSpecies.name # Species NameAuthor.date # Surname of first author and date of publicationPaEa # Estimated mean phenotype of individuals from Pop. A raised in Env. BPaEa.SD # Estimated standard deviationPaEa.sample.size # Sample SizePaEa.SE # Standard error of the meanPbEb # Estimated mean phenotype of individuals from Pop. B raised in Env. BPbEb.SD # Estimated standard deviationPbEb.sample.size # Sample SizePbEb.SE # Standard error of the meanPaEb # Estimated mean phenotype of individuals from Pop. A raised in Env. BPaEb.SD # Estimated standard deviationPaEb.sample.size # Sample SizePaEb.SE # Standard error of the meanPbEa # Estimated mean phenotype of individuals from Pop. A raised in Env. APbEa.SD # Estimated standard deviationPbEa.sample.size # Sample SizePbEa.SE # Standard error of the meanDistance.between.pops.km # Distance between population A and B in kilometresTrait.measured # Trait name from publicationTrait.type # Trait type: Behavioural, Growth, Morphology, Physiological or TimingSessile.mobile # Adult stage is sessile or mobilePollination # Pollination mode: Water, Wind, AnimalSample.size # Sample size not (None) or poorly (Unsure) reported. Sample size reported for the number of measured individuals (End) or the number of crossed individuals only (Initial). If the number of crossed individuals was reported together with mortality rates up to the time of measurement, sample sizes were calculated (Calc)
DOI: 10.6084/m9.figshare.27049906.v1
title: <b>Early Cenozoic reactivation of a pre-existing crustal boundary along the Kuantan Shan-Hei Shan area in the Jiuxi Basin, northeastern Tibetan Plateau</b>

description: Detrital zircon U-Pb dating of the Cenozoic strata in the Jiuxi Basin
DOI: 10.17632/p5h7x55zw7
title: OCTA Macula Coronal Views

description: Macula Coronal Views (MCV) dataset 

This dataset is used for experiements aiming to transform opical coherence tomography angiography (OCTA) B-Scan into 
innovative OCTA graphs. The results of the research will be submitted in a paper titled as: 
"New macular vasculature graphs in optical coherence tomography angiography".

The dataset contains 129 subjects that were organized as follows:

90 Subjects of Normal OCTA scans
29 Subjects of Diabetic Retinopathy (DR) OCTA scans
5 Subjects of Age-related Macula Degeneration (AMD) OCTA scans
5 Subjects of Choroid Neovascularization (CNV) OCTA scans

Each subject of above consists of 640 MCVs generated from OptoVeu OCTA B-Scan according to paper 
explained in published paper titled "Reconstruction and Visualization of 5µm Sectional Coronal Views for Macula Vasculature.
in OptoVue OCTA".

The 640 MCVs in each subject are PNG images that can be displayed separately or as animation using any image display platform.

The Excel files contain details on all subjects.

Both papers will be beneficial to OCTA technology and clinics.

For further information, contact the creator of the dataset using the following corresponding address (electronic Signature).

Abdel-Razzak Al-Hinnawi (B.Sc., M.Sc., Ph.D. Medical Imaging Physics & Technology, Digital Image Processing, Biomedical Engineering)
Faculty of Applied Medical Sciences
ISRA University
Amman, Jordan
e-mail: abedalrazak.henawai@iu.edu.jo ; xyzmohammad68@gmail.com
Mobile: 962+780515199 (including Whatsup)
P. O. Box: 22, 33 , Amman 11622
Jordan
DOI: 10.17632/r5b7mrmr5z
title: Automatización de un colector solar calentador de aire

description: En este trabajo se presenta un sistema de control automático para un colector solar calentador de aire. El dispositivo de control disminuye la intervención del usuario y evita la tediosa tarea de encendido y apagado. El colector se encuentra adosado a la fachada norte del local a calefaccionar. El funcionamiento es por convección forzada mediante un ventilador tomando aire desde el interior del local, calentándolo y luego reingresado al local a mayor temperatura. El prototipo de control automático está basado en la tecnología arduino y permite encender/apagar el ventilador del colector. También, se realiza una descripción del hardware utilizado, y además, se presenta la lógica de control detallando las condiciones de programación que permiten realizar la automatización del colector. Las condiciones están relacionadas con el estado térmico del colector y del local a calefaccionar. El estado térmico es evaluado a partir de los datos medidos de dos sensores digitales de temperatura.
DOI: 10.6084/m9.figshare.10266299.v1
title: 2019 Nature PhD Students Survey Data

description: Anonymised raw data, questionnaire and presentation of data from the 2019 Nature PhD Students survey.
DOI: 10.6084/m9.figshare.1185723.v4
title: Review materials for Tressoldi et al 2014 (version 2)

description: Supplementary materials for my review of Tressoldi P et al. 2014. "Brain-to-Brain (mind-to-mind) interaction at distance: a confirmatory study" Version 2. StimulusTimecourses.png: Stimulus time courses extracted from raw data in Tressoldi P, Pederzoli L, Bilucaglia M et al. v2 "Brain-to-Brain (mind-to-mind) interaction at distance" Each row corresponds to the stimulus time course for one of the 20 pairs of participants. Upwards bumps in these plots indicate stimulus (signal) periods, the rest are baseline (silence) periods. The strong correlation between the different stimulus protocols is immediately obvious. For the majority (13) of pairs the first stimulus occurred after one minute. For the remainder (7) the first stimulus occurred after 2 minutes. In addition to the high predictability of these time courses, this plot also demonstrates that the intial silence period was not randomized to be 1, 2, or 3 minutes as claimed in the manuscript, but simply either 1 or 2 minutes. TemporalCorrelations.png: Temporal correlations between raw data randomly sampled into 50% training and 50% testing samples as done in the analysis by Tressoldi P, Pederzoli L, Bilucaglia M et al. v2 "Brain-to-Brain (mind-to-mind) interaction at distance". Each panel shows a 2D density histogram. Hotter colours indicate a greater frequency of data points clustering in that location. These plots compare the randomly assigned "training samples" to the remaining "testing samples". The four columns correspond to EEG channels 1-4. The four rows are four repetitions in which a new set of training/test samples have been assigned randomly. For most plots the strong correlation between the randomly assigned samples is evident even on visual inspection. Even for the plots that seem to show less of a correlation (e.g. the fourth column) the Pearson's correlation is extremely significant. It should not be surprising that a powerful classifier can exploit such correlations to decode arbitrary stimulus labels.
DOI: 10.6084/m9.figshare.14912405.v2
title: Density calibrated cone beam CT as a tool for adaptive radiotherapy

description: Visual inspections of anatomical changes observed on daily cone-beam CT (CBCT) images are often used as triggers for radiotherapy plan adaptation to avoid unacceptable dose levels to the target or OARs. Direct CBCT dose calculations would improve the ability to adapt only those plans where dosimetric changes are observed. This study investigates the accuracy of dose calculations on CBCTs. Calibration curves were obtained for CBCT imagers at nine identical accelerators. CBCT scans of a phantom with different density inserts were recorded for two scan modes (Head-Neck and Pelvis) and mean calibration curves were calculated. Subsequently, CBCT scans of the phantom with six different density inserts were recorded, the dose distributions on the CBCTs were calculated and compared to dose on the planning CT (pCT). The uncertainty was quantified by the dosimetric difference between the pCT and the CBCT. The two mean calibration curves were used to calculate the daily delivered CBCT dose for ten Head-Neck-, eleven Lung-, and ten pelvic patients. Additional patient calculations were performed using low-HU empirically corrected calibration curves. Patient doses were compared on target coverage and mean dose, and D1cc for OARs. The dose differences between pCT and CBCT for phantom data were small for all DVH parameters, with mean deviations below ±0.6% for both CBCT modes. For patient data, it was found that low-HU corrected calibration curves performed the best. The mean deviations for the mean dose and coverage of the target were 0.2%±0.7% and 0.1%±0.6%, across all patient groups. Dose calculation on CBCT images results in target coverage and mean dose with an accuracy of the order of 1%, which makes this acceptable for clinical use. The CBCT mode specific calibration curves can be used at all identical imaging devices and for all patient groups.
DOI: 10.6084/m9.figshare.20293890.v2
title: Supplementary data for Islam et al. 2022 - Summarized results of the reanalysis of both PCAWG and extended datasets

description: Input mutational matrices and <em>de novo</em> extracted mutational signatures and activities for PCAWG and extended cohorts.
DOI: 10.6084/m9.figshare.24290899.v1
title: HPK1 and FGFR1 datasets

description: IC50 and Ki dataset for HPK1 and FGFR1
DOI: 10.6084/m9.figshare.29021390.v1
title: <b>The positive effect of Tree Species Richness on Soil Carbon Stocks depends on Forest type</b>

description: This dataset explores how tree‐species diversity and forest type shape soil carbon storage across different depth layers in subtropical forests. It includes measurements from five forest types—bamboo forest, coniferous forest, deciduous broadleaf forest, evergreen broadleaf forest, and mixed forest—and captures key biotic and abiotic variables: tree species diversity indices; aboveground and belowground biomass; litter quantity and quality (carbon, nitrogen, and phosphorus concentrations); and soil physicochemical properties (bulk density, moisture content, and soil carbon and nitrogen concentrations) at different depths.
DOI: 10.17632/8zcxr9wvrm
title: Economic, demographic and corruption data - Latin America and Asian countries

description: The file contains the dataset used for the empirical analysis of the study titled "Economic Growth and Corruption in Emerging Markets: Does Economic Freedom Matter?”. The dataset includes annual data from 19 countries of Latin America (Argentina, Bolivia, Brazil, Chile, Colombia, Costa Rica, Ecuador, El Salvador, Guatemala, Haiti, Honduras, Mexico, Nicaragua, Panama, Paraguay, Peru, Dominican Republic, Uruguay, and Venezuela), 9 countries of Asia (China, India, Indonesia, Japan, Malaysia, Philippines, Singapore, Thailand, and Vietnam), and 2 countries of Oceania (Australia and New Zealand). The investigation period spans 2000 through 2017. The data consists about economic, social, demographic, corruption, political e freedom related indexes and variables [Natural logarithm of Gross Domestic Product per capita; Corruption Perception Index; Economic Freedom Index; Economic Freedom of the World; Foreign Direct Investment as % of GDP (net inflows); Gross fixed capital formation as % of GDP; Inflation Rate as ∆% of consumer price indices; Schooling as average number of years of education received by people ages 25 and older; % of the population living in urban areas; Number of years a newborn infant would live; Number of births per woman (average); Annual population growth rate (%); Index that reflects perceptions of the extent to which a country's citizens are able to participate in selecting their government, as well as freedom of expression/media; Index that reflects perceptions of the likelihood of political instability or politically motivated violence, including terrorism; Index that reflects perceptions of the quality of public and civil services; Index that reflects perceptions of the ability of the government to formulate and implement policies and regulations that promote the development of the private sector; Index that reflects perceptions of the extent to which agents have confidence in and abide by the rules of society (contract enforcement, property rights, police and justice); Index that measures a mature and internally coherent democracy vs. autocracies sharply restrict that suppress competitive political participation; HDI_dummy: Human Development Index related; Tropical_Dummy: related to country’s geographic position (located between the Tropics of Cancer and Capricorn)].
DOI: 10.25405/data.ncl.28741436.v1
title: Historical flow gauging data acquired at Austin's Bridge, River Dart (UK) by the Environment Agency

description: Summary information of the flow gauging measurements undertaken at Austin's Bridge, River Dart (UK) by the Environment Agency from 1980 - 2018.
DOI: 10.6084/m9.figshare.22827878.v1
title: The Health Gym v2.0 Synthetic Antiretroviral Therapy (ART) for HIV Dataset

description: ###===### This synthetic dataset, centred on ART for HIV, was synthesised employing the model outlined in reference [1], incorporating the techniques of WGAN-GP+G_EOT+VAE+Buffer. <br> This dataset serves as a principal resource for the Centre for Big Data Research in Health (CBDRH) Datathon (see: CBDRH Health Data Science Datathon 2023 (cbdrh-hds-datathon-2023.github.io)). Its primary purpose is to advance the Health Data Analytics (HDAT) courses at the University of New South Wales (UNSW), providing students with exposure to synthetic yet realistic datasets that simulate real-world data. <br> The dataset is composed of 534,960 records, distributed over 15 distinct columns, and is preserved in a CSV format with a size of 39.1 MB. It contains information about 8,916 synthetic patients over a period of 60 months, with data summarised on a monthly basis. The total number of records corresponds to the product of the synthetic patient count and the record duration in months, thus equating to 8,916 multiplied by 60. <br> The dataset's structure encompasses 15 columns, which include 13 variables pertinent to ART for HIV as delineated in reference [1], a unique patient identifier, and a further variable signifying the specific time point. <br> ###===### This dataset forms part of a continuous series of work, building upon reference [2]. For further details, kindly refer to our papers: [1] Kuo, Nicholas I., Louisa Jorm, and Sebastiano Barbieri. "Generating Synthetic Clinical Data that Capture Class Imbalanced Distributions with Generative Adversarial Networks: Example using Antiretroviral Therapy for HIV." arXiv preprint arXiv:2208.08655 (2022). [2] Kuo, Nicholas I-Hsien, et al. "The Health Gym: synthetic health-related datasets for the development of reinforcement learning algorithms." Scientific Data 9.1 (2022): 693. <br> ###===### Latest edit: 16th May 2023.
DOI: 10.6084/m9.figshare.24616146.v1
title: Mouse single nucleus ATACseq data from the hippocampus of eight inbred mouse strains

description: Mouses single nucleus ATAC seq data from the hippocampus of eight inbred mouse strains: A/J, C57BL/6J, BALB/cJ, CAST/EiJ, FVB/J, DBA/2J, PWK/PhJ, and WSB/EiJ.
DOI: 10.6084/m9.figshare.25376461.v1
title: <b>A global view on quantitative proteomic and metabolic analysis of rat livers </b><b>under</b><b> different hypoxia protocols</b>

description: PD software with corresponding species protein numbers for raw data from mass spectrometry Database search calculation and analysis, the search results are filtered to retain reliable peptides and proteins. Statistical analysis of the results, screening of differential proteins, differential protein cluster analysis, sample correlation analysis, GO, Pathway functional annotation and enrichment based on the corresponding species function database, differential protein interaction analysis and COG analysis.
DOI: 10.6084/m9.figshare.25880101.v1
title: Sn_Integrated_normalized_QC_matrix

description: Integrative of snRNA-seq datasets
DOI: 10.6084/m9.figshare.5670643.v1
title: The production of the alveolar, apico-alveolar and post-alveolar fricatives in syllabic coda of BP and EP

description: Abstract In this study, the acoustic-articulatory characteristics of the alveolar [s, z], apicoalveolar [, ] and post-alveolar [ʃ, ʒ] fricatives in syllabic coda of Brazilian and European Portuguese were investigated. Data were supplied by native informants from Florianópolis-SC/BR, Rio de Janeiro-RJ/BR, Erechim-RS/BR, Lisboa/PT, Granjal-Viseu/PT and São Jorge-Azores/PT. Since it is common sense that in Brazilian Portuguese only alveolar or post-alveolar fricatives occur, the distribution of fricatives in syllabic coda in speech samples from the places aforementioned was analyzed. The spectral peaks of the fricatives in relation to informants’ schooling level were the investigated parameters. Based on the present findings, the relation between low schooling and the analysis of spectral peak values of the fricative segments produced in Brazilian and European Portuguese was found crucial for the establishment of a link between the production of these fricatives and the colonization process of the geographic regions included in this research.
DOI: 10.17632/scn464x7xd
title: Data for: Multichannel Seismocardiography: An Imaging Modality for Investigating Heart Vibrations

description: Seismocardiography is the measurement of vibration waves caused by the beating heart with accelerometer(s) placed on the chest. Investigating the nature and the behavior of these vibration waves, by comparing measurements from multiple sites, would help to understand the heart’s mechanical contraction activity. Using newly designed multichannel seismocardiogram equipment, it was possible to investigate the vibration waves with 16 three-axis sensors. The equipment performed well with highly precise synchronization rate over 10 min, linear frequency response and high signal quality. The vibration waves were analyzed using the sagittal axis, a single cardiac cycle and focusing on four fiducial points. Two of the fiducial point where the negative and positive peaks associated with aorta valve opening, along with peaks associated with aorta valve closing. The respective average centers of mass of the four fiducial points in 13 subjects were at (frontal axis: 35 mm, vertical axis: 5 mm), (31, 6), (26, 24), and (4, -2), relative to the Xiphoid Process. Similar patterns among the subjects were identified for the propagation of the waves across the chest for the 4 fiducial points. The multichannel seismocardiogram equipment successfully revealed a general pattern present in chest surface vibration maps. Multichannel Seismocardiography from 13 healthy subjects. Measurements were conducted on 13 male subjects with mean age 27±4 years, and mean BMI of 24±4 kg·m-2. The study was approved by the North Denmark Region Committee on Health Research Ethics: N-20170008. The sensors were placed in a 4 by 4 grid formation on the volunteer’s chest, along with a 3-lead ECG and a respiration belt. The sensor grid was placed such that the sensor in location 3,2 was placed at the Xiphoid Process, and such that the centers of adjacent sensors were spaced at approximately 40 mm. Subjects were placed in a supine position and minimum 1-minute recordings were obtained with a 500 Hz sampling rate.