cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5573756
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.5566676
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.5752065
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.5772866
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.5772967
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.6941629
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.5281/zenodo.7805135
title: Example input for MAPP workflow

description: Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins and their sequence logos configuration template for the workflow (YAML) experiment design table (TSV) Genomic annotation for human: chr21 (GTF) Genomic sequence for human: chr21 (FASTA) PolyAsite Atlas 2.0 annotation: chr21 (BED)
description: {"references": ["https://pubmed.ncbi.nlm.nih.gov/26293963/"]}
DOI: 10.17028/rd.lboro.22567630
title: Supplementary information files for: Electrospun PVA membranes reinforced with cellulose nanocrystals and thermally reduced graphene oxide: thermal, mechanical and UV-protection properties

description: Supplementary files for article Electrospun PVA membranes reinforced with cellulose nanocrystals and thermally reduced graphene oxide: thermal, mechanical and UV-protection properties. Polyvinyl alcohol (PVA) has been widely proposed as biodegradable films, but it suffers rapid UV degradation affecting mechanical properties, low water resistance and poor antimicrobial properties. To overcome these difficulties, it has been blend with nanocrystalline cellulose (CNC) to produce nanocomposite membranes; however, adding a third element such as reduced graphene oxide (rGO) to the blend with potential packaging applications has not been reported. Herein, CNC was isolated from agroindustrial wastes (sugarcane bagasse; SCB) and used along with thermally reduced graphene oxide (TrGO) to be incorporated into PVA for the production of electrospun membranes for packaging applications. A wide variety of electrospinning parameters were analyzed to obtain PVA:CNC:TrGO composite membranes and their effects on thermal stability, mechanical properties, UV protection and moisture absorption, were evaluated. The results show that the isolation of CNC from SCB presented two phases: monoclinic and triclinic of type I cellulose. The highest crystallinity index (78.96%) and the diameter (10–20 nm)-length (150–200 nm) relation were found at 50 °C using a fiber:acid solution ratio of 1:50. In the case of ternary composite membranes, only free-defect morphologies with a composition of 84.5:15.0:0.5 wt% (PVA:CNC:TrGO) were observed. As a result of the adequate orientation and dispersion of the CNC:TrGO in the PVA matrix an improved was observed in the thermal stability, mechanical (137.48 MPa, HIT), UV barrier (up to 6% compared to pure PVA) and moisture absorption (reducing from 4.8% to 0.05%) properties. The eco-friendly structured ternary nanocomposites support the desired properties to produce food packaging materials.
DOI: 10.17028/rd.lboro.22567630.v1
title: Supplementary information files for: Electrospun PVA membranes reinforced with cellulose nanocrystals and thermally reduced graphene oxide: thermal, mechanical and UV-protection properties

description: Supplementary files for article Electrospun PVA membranes reinforced with cellulose nanocrystals and thermally reduced graphene oxide: thermal, mechanical and UV-protection properties. Polyvinyl alcohol (PVA) has been widely proposed as biodegradable films, but it suffers rapid UV degradation affecting mechanical properties, low water resistance and poor antimicrobial properties. To overcome these difficulties, it has been blend with nanocrystalline cellulose (CNC) to produce nanocomposite membranes; however, adding a third element such as reduced graphene oxide (rGO) to the blend with potential packaging applications has not been reported. Herein, CNC was isolated from agroindustrial wastes (sugarcane bagasse; SCB) and used along with thermally reduced graphene oxide (TrGO) to be incorporated into PVA for the production of electrospun membranes for packaging applications. A wide variety of electrospinning parameters were analyzed to obtain PVA:CNC:TrGO composite membranes and their effects on thermal stability, mechanical properties, UV protection and moisture absorption, were evaluated. The results show that the isolation of CNC from SCB presented two phases: monoclinic and triclinic of type I cellulose. The highest crystallinity index (78.96%) and the diameter (10–20 nm)-length (150–200 nm) relation were found at 50 °C using a fiber:acid solution ratio of 1:50. In the case of ternary composite membranes, only free-defect morphologies with a composition of 84.5:15.0:0.5 wt% (PVA:CNC:TrGO) were observed. As a result of the adequate orientation and dispersion of the CNC:TrGO in the PVA matrix an improved was observed in the thermal stability, mechanical (137.48 MPa, HIT), UV barrier (up to 6% compared to pure PVA) and moisture absorption (reducing from 4.8% to 0.05%) properties. The eco-friendly structured ternary nanocomposites support the desired properties to produce food packaging materials.
DOI: 10.34808/tcxe-6s43
title: Hemocompatibility of nanocrystalline diamond layers
DOI: 10.34808/ejhr-ej49
title: Measurement spectrum obtained with the use of ZnO coated microsphere-based fiber-optic sensor - 110 Celsius degrees
DOI: 10.34808/40r4-ry25
title: Split-beam echosounder data from Puck Bay spring 2019 Part II
DOI: 10.34808/bwc3-s817
title: The effect of interview location on the perception of Ecosystem Services provided by trees. A Polish case study.
DOI: 10.34808/qzdb-n365
title: Dynamic impedance spectra of programmable dynamically changing RC model based on digital potentiometers
DOI: 10.25405/data.ncl.21588042.v4
title: Informing drug discovery: a systematic review of POLG-related disease models

description: Supplementary Table 1. PRISMA checklist <br> Supplementary Figure 1. PRISMA flow diagram <br> Supplementary Table 2. Search strategy <br> Supplementary Table 3. Detailed article inclusion/exclusion criteria <br> Supplementary Table 4. Excluded full text articles <br> Supplementary Table 5. Data extracted from all included articles. <br> Supplementary Table 6A. The criteria for assessing reporting quality of each article. <br> Supplementary Table 6B. The assessment of the reporting quality of each article. <br> Supplementary Table 6C. The summarised Assessment of the reporting quality of each article. <br> Supplementary Table 6D. The assessment of risk of bias for each model system.
DOI: 10.34808/kjz1-ey63
title: Attitudes to tree removal on private properties  in two Polish cities.
DOI: 10.34808/btq9-jt02
title: Attitudes to tree removal on private property  in rural and urban Polish municipalities.
DOI: 10.17029/c0b79a19-1363-42cb-a33e-6a818be2eff4
title: Dataset: Understanding the factors that influence stroke survivors to begin or resume exercise: a qualitative exploration

description: Thematic Map
DOI: 10.34808/aa2a-3v37
title: Lipsko 2018 - video data - pedestrian, bicycles, vehicles
DOI: 10.57903/uj/k3qdys
title: Local pO2 study in murine tumors

description: Before ITPP treatment, animals were randomized into two groups (ITPP or Saline). In one set of experiments (4T1 tumors, mice injected with 3 ITPP doses), animals were additionally randomized based on preliminary pO2 level in the tumor, to equalize normoxic and hypoxic tumors population. Four different protocols of ITPP treatments were studied. 4T1 tumors were subjected to either 3 (8, 12 and 16 days after tumor inoculation, 1.5 g/kg, IP) or 4 (8, 9, 15, 16 days after tumor inoculation, 1.5 g/kg, IP) doses of ITPP. B16F10 tumors were treated with 6 ITPP injections on either 5, 6, 11, 12, 17, 18 or 5, 6, 12, 13, 19, 20 days after tumor inoculation, all as an intraperitoneal dose of 2 g/kg. These treatment protocols were designed based on earlier results by Tran et al. and pilot experiments. The treatment schedules were adjusted to the tumor growth rate. Mice were randomized into two groups based on ITPP or saline (control, vehicle for ITPP) administration for each protocol: 4T1 tumors treated with 3ITPP doses: N=10 for ITPP and N=10 for control; 4 ITPP doses protocol N=10 for ITPP group and N=9 for saline-treated animals; for B16F10 tumors received six doses at day 5,6,11,12,17,18 there were N=11 for ITPP and N=7 for the control group; second 6 dose protocol (injections at day 5,6,12,13,19,20) has N=6 for ITPP group and N=5 for saline-treated animals. In vivo EPR measurements were conducted at L-band (Bruker Elexsys-II E540, Germany) CW EPR spectrometer using a surface coil (Bruker, Germany). A high-resolution ultrasound (US) imaging system designed for small experimental animals (Visual Sonics Vevo 2100, Canada) with an MS-550D transducer with a center operating frequency of 22–55 MHz was used for ultrasound measurements of 4T1 tumors. To better understand ITPP effects on tissue oxygenation, tumors were classified based on local pO2 values before treatment as normoxic (&gt;10 mmHg) or hypoxic (&lt;10 mmHg). Additionally, to investigate changes in tumor oxygenation during the experimental time, each local pO2 value for the selected time point was classified as normoxic (N) and hypoxic (H).
DOI: 10.34808/wqry-5p10
title: Góra Kalwaria 2018 - video data - pedestrian, bicycles, vehicles
DOI: 10.34808/pkx1-cm80
title: Video data recorded on S7 road
DOI: 10.34808/h8wm-v198
title: Kowalewo Pomorskie 2021 - video data - pedestrian, bicycles, vehicles
DOI: 10.34808/hem3-pw92
title: Gostyn 2021 - video data I - pedestrian, bicycles, vehicles
DOI: 10.34808/xrc2-y485
title: Krotoszyn 2021 - video data I - pedestrian, bicycles, vehicles
DOI: 10.34808/vqxh-pr63
title: Organochlorine pesticides and polichlorinated biphenyls concentrations in fresh snowfall or top layer of snow from Hornsund region, Svalbard, in the spring 2019
DOI: 10.34808/ggk5-e815
title: Experimental dataset on detection of SARS-CoV-2 specific IgG antibodies by the fiber optic microsphere-based sensor
DOI: 10.25345/c5z892r1j
title: MassIVE MSV000091652 - A roadmap for ribosome assembly in human mitochondria
title: Mitoribosomes are essential macromolecular complexes, which synthesize the mitochondrial-encoded core components of the oxidative phosphorylation complexes. Defects in mitoribosome biogenesis and function are associated with severe human diseases mostly affecting high-energy demanding tissues. It is crucial to dissect the assembly pathway in detail to understand the molecular basis of the described deficiencies. Here, we applied a multidisciplinary approach by combining biochemical isolation and analysis of native mitoribosomal complexes with quantitative mass spectrometry and mathematical modelling to reconstitute the assembly pathway of the human mitoribosome. In contrast to its bacterial counterpart, human mitoribosome biogenesis involves the formation of protein-only modules, which then coordinatedly assemble on the respective rRNA scaffold. Our comprehensive data set enabled us to establish a kinetic model, which allows to predict and infer the rate-limiting steps during mitoribosome assembly. The mitoribosome modules are resistant to changes in the kinetic parameters of the assembly system and do not require the presence of rRNA. This study advances our understanding of human mitoribosome biogenesis and reflects the evolutionary divergence from its bacterial counterpart.
DOI: 10.34808/q2bm-7m23
title: IKE1-IKE3 (C-1305 derivatives) inhibitory effect of the Yeast Topoisomerase II relaxation activity
DOI: 10.34808/33rq-rx91
title: Dataset for Event-Based Non-Intrusive Load Monitoring Research
DOI: 10.6084/m9.figshare.22567752
title: Supplementary materials 1: specimen data from Multiple modes of inference reveal less phylogenetic signal in marsupial basicranial shape compared to the rest of the cranium

description: Dataset including species names, specimen accession numbers, sources, and data on body mass, locomotion, and diet.
DOI: 10.6084/m9.figshare.22567752.v1
title: Supplementary materials 1: specimen data from Multiple modes of inference reveal less phylogenetic signal in marsupial basicranial shape compared to the rest of the cranium

description: Dataset including species names, specimen accession numbers, sources, and data on body mass, locomotion, and diet.
DOI: 10.6084/m9.figshare.22567758
title: Supplementary materials 3: Parsimony analyses from Multiple modes of inference reveal less phylogenetic signal in marsupial basicranial shape compared to the rest of the cranium

description: Files related to parsimony analyses (data, macros, batch commands, output trees), and files related to PAUP/TNT analyses of the molecular data
DOI: 10.6084/m9.figshare.22567758.v1
title: Supplementary materials 3: Parsimony analyses from Multiple modes of inference reveal less phylogenetic signal in marsupial basicranial shape compared to the rest of the cranium

description: Files related to parsimony analyses (data, macros, batch commands, output trees), and files related to PAUP/TNT analyses of the molecular data
DOI: 10.5285/badff3b9-8bc8-4897-b324-7f4653fdd214
title: UKGEOS Cheshire - TH0424 Final Borehole Information Pack

description: The final borehole information pack from the TH0424 Ground Investigation Borehole drilled as part of the UK Geoenergy Observatories (UKGEOS) Cheshire facility. TH0424 was drilled to TD of 101 m between the 08-Nov-2021 and 30 Nov-2021. Drill core was collected from 2 m – 101 m with 100 mm diameter. This final data release pack from BGS contains composite and digital wireline logs alongside daily driller's borehole records, sedimentary and discontinuity logging and core analysis data. This information pack also contains the Initial and additional Core Scanning datasets from the BGS Core Scanning Facility (https://doi.org/10.5285/b06d44e6-324d-4e19-bf78-a4520b9b87c8 and https://doi.org/10.5285/381e9664-0f43-4e4c-90ae-1b16ba83681b).
DOI: 10.6084/m9.figshare.22332160.v1
title: Antipsychotic utilization, healthcare resource use and costs, and quality of care among fee-for-service medicare beneficiaries with schizophrenia in the United States

description: No research to date has examined antipsychotic (AP) use, healthcare resource use (HRU), costs, and quality of care among those with schizophrenia in the Medicare program despite it serving as the primary payer for half of individuals with schizophrenia in the US. To provide national estimates and assess regional variation in AP treatment utilization, HRU, costs, and quality measures among Medicare beneficiaries with schizophrenia. Cross-sectional descriptive analysis of 100% Medicare claims data from 2019. The sample included all adult Medicare beneficiaries with continuous fee-for-service coverage and ≥1 inpatient and/or ≥2 outpatient claims with a diagnosis for schizophrenia in 2019. Summary statistics on AP use; HRU and cost; and quality measures were reported at the national, state, and county levels. Regional variation was measured using the coefficient of variation (CoV). We identified 314,888 beneficiaries with schizophrenia. About 91% used any AP; 20% used any long-acting injectable antipsychotic (LAI); and 14% used atypical LAIs. About 28% of beneficiaries had ≥1 hospitalization and 47% had ≥1 emergency room (ER) visits, the vast majority of which were related to mental health (MH). Total annual all-cause, MH, and schizophrenia-related costs were $23,662, $15,000 and $12,109, respectively. Among those with hospitalizations, 18.4% and 27.3% had readmission within 7 and 30 days and 56% and 67% had a physician visit and AP fill within 30-days post-discharge, respectively. Overall, 81% of beneficiaries were deemed adherent to their AP medications. Larger interstate variations were observed in LAI use than AP use (CoV: 0.21 vs 0.02). County-level variations were larger than state-level variations for all measures. In this first study examining a national sample of Medicare beneficiaries with schizophrenia, we found low utilization rates of LAIs and high levels of hospital admissions/readmissions and ER visits. State and county-level variations were also found in these measures.
DOI: 10.25345/c5th8bx7s
title: MassIVE MSV000091653 - A roadmap for ribosome assembly in human mitochondria
title: Mitoribosomes are essential macromolecular complexes, which synthesize the mitochondrial-encoded core components of the oxidative phosphorylation complexes. Defects in mitoribosome biogenesis and function are associated with severe human diseases mostly affecting high-energy demanding tissues. It is crucial to dissect the assembly pathway in detail to understand the molecular basis of the described deficiencies. Here, we applied a multidisciplinary approach by combining biochemical isolation and analysis of native mitoribosomal complexes with quantitative mass spectrometry and mathematical modelling to reconstitute the assembly pathway of the human mitoribosome. In contrast to its bacterial counterpart, human mitoribosome biogenesis involves the formation of protein-only modules, which then coordinatedly assemble on the respective rRNA scaffold. Our comprehensive data set enabled us to establish a kinetic model, which allows to predict and infer the rate-limiting steps during mitoribosome assembly. The mitoribosome modules are resistant to changes in the kinetic parameters of the assembly system and do not require the presence of rRNA. This study advances our understanding of human mitoribosome biogenesis and reflects the evolutionary divergence from its bacterial counterpart.
DOI: 10.5517/ccdc.csd.cc28tgyj
title: CCDC 2109858: Experimental Crystal Structure Determination

description: Related Article: Subhadip Jana, Benedict J. Elvers, Sebastian Pätsch, Pallavi Sarkar, Ivo Krummenacher, Mithilesh Kumar Nayak, Avijit Maiti, Nicolas Chrysochos, Swapan K. Pati, Carola Schulzke, Holger Braunschweig, Cem B. Yildiz, Anukul Jana|2023|Org.Lett.|25|1799|doi:10.1021/acs.orglett.2c03993
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28tgzk
title: CCDC 2109859: Experimental Crystal Structure Determination

description: Related Article: Subhadip Jana, Benedict J. Elvers, Sebastian Pätsch, Pallavi Sarkar, Ivo Krummenacher, Mithilesh Kumar Nayak, Avijit Maiti, Nicolas Chrysochos, Swapan K. Pati, Carola Schulzke, Holger Braunschweig, Cem B. Yildiz, Anukul Jana|2023|Org.Lett.|25|1799|doi:10.1021/acs.orglett.2c03993
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28th0m
title: CCDC 2109860: Experimental Crystal Structure Determination

description: Related Article: Subhadip Jana, Benedict J. Elvers, Sebastian Pätsch, Pallavi Sarkar, Ivo Krummenacher, Mithilesh Kumar Nayak, Avijit Maiti, Nicolas Chrysochos, Swapan K. Pati, Carola Schulzke, Holger Braunschweig, Cem B. Yildiz, Anukul Jana|2023|Org.Lett.|25|1799|doi:10.1021/acs.orglett.2c03993
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28wtgg
title: CCDC 2112106: Experimental Crystal Structure Determination

description: Related Article: Shanshan Ma, Haoying Cao, Rongwan Gao, Yanhong Feng, Yawen Guo, Wei Guan, Xinfang Duan, Peng Jiao|2023|Org.Lett.|25|2098|doi:10.1021/acs.orglett.3c00469
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.