cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11105094
title: Raw ONT pod5 data: Barcoded D2O Aminobacter P9b DNA
title: ONT genomic sequencing of Aminobacter P9b grown on 0% D2O
title: ONT genomic sequencing of Aminobacter P9b grown on 30% D2O
title: ONT genomic sequencing of Aminobacter P9b grown on 100% D2O

description: Aminobacter P9b samples were incubated on a 100% D2O, 30% D2O and 0% D2O medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.

For barcoding, we used the EXP-NBD114 Barcodes 14, 15, and 16:

BC 14: 0% D2OBC 15: 30% D2OBC 16: 100% D2O
DOI: 10.5281/zenodo.11105093
title: Raw ONT pod5 data: Barcoded D2O Aminobacter P9b DNA
title: ONT genomic sequencing of Aminobacter P9b grown on 0% D2O
title: ONT genomic sequencing of Aminobacter P9b grown on 30% D2O
title: ONT genomic sequencing of Aminobacter P9b grown on 100% D2O

description: Aminobacter P9b samples were incubated on a 100% D2O, 30% D2O and 0% D2O medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.

For barcoding, we used the EXP-NBD114 Barcodes 14, 15, and 16:

BC 14: 0% D2OBC 15: 30% D2OBC 16: 100% D2O
DOI: 10.21233/4v43-1434
title: Elk City Lake water chemistry dataset

description: Raw data for the Elk City Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.2vfxr6
title: Occurrence Download

description: A dataset containing 6026 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "Geometry POLYGON((116.01508 7.59632,120.71136 7.59632,120.71136 12.40115,116.01508 12.40115,116.01508 7.59632))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Lanius cristatus Linnaeus, 1758, Todiramphus chloris (Boddaert, 1783), Chalcophaps indica indica, Gracula religiosa palawanensis (Sharpe, 1890), Pycnonotus cinereifrons (Tweeddale, 1878), Anarhynchus alexandrinus, Anarhynchus leschenaultii, Copsychus niger niger, Eurystomus orientalis orientalis, Corvus enca (Horsfield, 1821), Polyplectron napoleonis R.Lesson, 1831, Alcedo meninting meninting)"
 ]
}

 The dataset includes 6026 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022902-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/a7z2-0m61
title: Oak Lake ostracode surface sample dataset

description: Raw data for the Oak Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/gdy8-wh67
title: LDDsite3968 ostracode surface sample dataset

description: Raw data for the LDDsite3968 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jgsb-jn23
title: Semerwater ostracode surface sample dataset

description: Raw data for the Semerwater ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/46dr-3d90
title: Leonard Rockshelter pollen dataset

description: Raw data for the Leonard Rockshelter pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jvvm-tt20
title: Erxianyan testate amoebae surface sample dataset

description: Raw data for the Erxianyan testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zjf4-6419
title: Merle Gear [GfBw-6] vertebrate fauna dataset

description: Raw data for the Merle Gear [GfBw-6] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xk7g-p260
title: Loon Lake water chemistry dataset

description: Raw data for the Loon Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.11105020
title: Raw ONT pod5 data: Barcoded C12/C13 Aminobacter P9b DNA
title: ONT genomic sequencing of Aminobacter P9b grown on C12
title: ONT genomic sequencing of Aminobacter P9b grown on C13

description: Aminobacter P9b samples were incubated on a C12 and a C13 medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.

For barcoding, we used the EXP-NBD114 Barcodes 20 and 21:

BC 20: C12BC 21: C13
DOI: 10.5281/zenodo.11105021
title: Raw ONT pod5 data: Barcoded C12/C13 Aminobacter P9b DNA
title: ONT genomic sequencing of Aminobacter P9b grown on C12
title: ONT genomic sequencing of Aminobacter P9b grown on C13

description: Aminobacter P9b samples were incubated on a C12 and a C13 medium, respectively. Cells were harvested by centrifugation. Pellets were resuspended and DNA extracted. The DNA was barcoded using the ONTs native barcoding kit, prepared with the SQK-LSK109 protocol, and sequenced on a MinION with an r9.4.1 flowcell.

For barcoding, we used the EXP-NBD114 Barcodes 20 and 21:

BC 20: C12BC 21: C13
DOI: 10.21233/jz9s-jv95
title: Wright Patman Lake diatom dataset

description: Raw data for the Wright Patman Lake diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.18712/nsd-nsd1353-v6
title: Local Elections in Norway, 2007

description: The data set is derived from Statistic Norway's local election survey in 2007, commissioned by Institute of Social Research. The purpose of the survey was to enlighten different sides of the local democracy; elections and election campaigns, political interest and participation. 

The survey deals with the following subjects:
-Political interest
-Voting in municipal, county council and national elections.
-Assessment of the significance of elections
-Assessment of the local democracy and local services
-Municipal challenges
-Municipal organization
-Information about politics
-Voting for persons in municipal elections
-Political participation

The survey is conducted as telephone interview and self-completion forms. The variables from the telephone interview have names beginning with 'spm', whilst variables from the self-completion questionnaire have variable names starting with 'po'.

To obtain knowledge about changes in the electorate, a part of the sample is derived from the gross sample of the Local Election Survey in 2003. This panel consists of people in the ages of 22 - 83 years. For the panel to have cross-sectional features, the real panel had to be supplied with persons from cohorts that recently had become eligible to vote during the four intermittent years. The supplementary sample is often characterized as a "false" panel. 

Note: Errors have been detected for the variables associated with question battery 35 (A-K), question 36, question battery 38 (A-G), and question 39 from the postal form. No respondents have been recorded with the value "6".
DOI: 10.21233/26eq-z264
title: LDDsite3072 water chemistry dataset

description: Raw data for the LDDsite3072 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/r36s-bv78
title: Hound Pond 2 [GcBi-9] vertebrate fauna dataset

description: Raw data for the Hound Pond 2 [GcBi-9] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/13q5-ne73
title: Nijeberkoop pollen dataset

description: Raw data for the Nijeberkoop pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/phq5-7z76
title: L'Estivalet pollen dataset

description: Raw data for the L'Estivalet pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/p7sd-5b96
title: Gardner Gulch ostracode surface sample dataset

description: Raw data for the Gardner Gulch ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/bwph-2c97
title: LDDsite3609 water chemistry dataset

description: Raw data for the LDDsite3609 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/9h4k-dz08
title: Lily Lake plant macrofossil dataset

description: Raw data for the Lily Lake plant macrofossil dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1ehm-wq11
title: Unnamed Lake (Sh) diatom surface sample dataset

description: Raw data for the Unnamed Lake (Sh) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.7910/dvn/xsgdyp
title: New aaptamine analogues from Australian marine sponge Aaptos lobata as mitochondrial modulators

description: NMR data
DOI: 10.21233/5b92-8j46
title: Trout Pond diatom surface sample dataset

description: Raw data for the Trout Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.14312044
title: CellBinDB: A Large-Scale Multimodal Annotated Dataset

description: CellBinDB is a large-scale, multimodal annotated dataset for cell segmentation. It contains 1,044 annotated microscope images and 109,083 cell annotations, covering four staining types: DAPI, ssDNA, H&E, and mIF. CellBinDB contains samples from two species, human and mouse, covering more than 30 histologically different tissue types, including disease-related tissues. The images in CellBinDB come from two sources: 844 mouse images from internal experiments and 200 human images from the open access platform 10x Genomics. We annotated all images in CellBinDB and provide two types of image annotations: semantic and instance masks. A xlsx file is attached to record the detailed information of each image.
DOI: 10.5281/zenodo.15110639
title: CellBinDB: A Large-Scale Multimodal Annotated Dataset

description: CellBinDB is a large-scale, multimodal annotated dataset for cell segmentation. It contains 1,044 annotated microscope images and 109,083 cell annotations, covering four staining types: DAPI, ssDNA, H&E, and mIF. CellBinDB contains samples from two species, human and mouse, covering more than 30 histologically different tissue types, including disease-related tissues. The images in CellBinDB come from two sources: 844 mouse images from internal experiments and 200 human images from the open access platform 10x Genomics. We annotated all images in CellBinDB and provide two types of image annotations: semantic and instance masks. A xlsx file is attached to record the detailed information of each image.

In addition, we provide the images and annotations of nine other widely used publicly available cell segmentation datasets downloaded from their original sources, retaining their original formats for ease of use.
DOI: 10.6084/m9.figshare.28979162
title: The original variation information files of re-sequencing for 154 soybean RIL populations

description: The original variation information files of re-sequencing for 154 soybean RIL populations, in which the first two samples are the parental materials of the population. Dual-end sequencing was performed using the Illumina NovaSeq 6000 platform with a sequencing depth of 10x, and variation calling was carried out using BWA + BCFTools.
DOI: 10.21233/7526-p857
title: Hole Bog testate amoebae surface sample dataset

description: Raw data for the Hole Bog testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/q3vb-b257
title: C050 (Wilson et al. 1994) diatom surface sample dataset

description: Raw data for the C050 (Wilson et al. 1994) diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6s05-z651
title: Moose Pond diatom surface sample dataset

description: Raw data for the Moose Pond diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/4kf3-5s34
title: LDDsite6514 water chemistry dataset

description: Raw data for the LDDsite6514 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/fweg-4z87
title: Little Island Lake water chemistry dataset

description: Raw data for the Little Island Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.28980044
title: Supplementary Material for: Transient Unilateral Sixth Nerve Palsy in a child Following General Anesthesia: A Case Report

description: Introduction: Transient sixth cranial (abducens) nerve palsy is uncommon, especially in children, in whom it can herald serious underlying pathology. Sixth nerve palsy has been reported after spinal anesthesia and lumbar puncture and, in very rare cases, after complicated general anesthesia or ocular muscle procedures. Acute strabismus in children is always a concerning occurrence for both parents and clinicians, so an accurate record of documented etiologies is essential to guide appropriate management and to reassure the parents.
Case presentation: Here we report the first case of transient unilateral sixth nerve palsy following general anesthesia for a non-ocular surgical procedure (adenoidectomy) in a five-year-old child. Ocular motility assessment confirmed right-sided abducens nerve palsy, and MRI excluded underlying pathology. The right eye movement gradually improved over the following two weeks, and the child made a full recovery. 
Discussion: Transient unilateral sixth nerve palsy is an extremely rare consequence of general anesthesia. 
Conclusion: Given the favorable prognosis, watchful waiting is an appropriate management strategy provided that the more common sinister causes of sixth nerve palsy have been carefully excluded.
DOI: 10.6084/m9.figshare.28980044.v1
title: Supplementary Material for: Transient Unilateral Sixth Nerve Palsy in a child Following General Anesthesia: A Case Report

description: Introduction: Transient sixth cranial (abducens) nerve palsy is uncommon, especially in children, in whom it can herald serious underlying pathology. Sixth nerve palsy has been reported after spinal anesthesia and lumbar puncture and, in very rare cases, after complicated general anesthesia or ocular muscle procedures. Acute strabismus in children is always a concerning occurrence for both parents and clinicians, so an accurate record of documented etiologies is essential to guide appropriate management and to reassure the parents.
Case presentation: Here we report the first case of transient unilateral sixth nerve palsy following general anesthesia for a non-ocular surgical procedure (adenoidectomy) in a five-year-old child. Ocular motility assessment confirmed right-sided abducens nerve palsy, and MRI excluded underlying pathology. The right eye movement gradually improved over the following two weeks, and the child made a full recovery. 
Discussion: Transient unilateral sixth nerve palsy is an extremely rare consequence of general anesthesia. 
Conclusion: Given the favorable prognosis, watchful waiting is an appropriate management strategy provided that the more common sinister causes of sixth nerve palsy have been carefully excluded.
DOI: 10.6084/m9.figshare.28980047
title: Supplementary Material for: PD-L1 in lung cytology: the path for standardization

description: Background: The advent of PD-1/PD-L1 inhibitors has revolutionized lung cancer treatment, necessitating accurate PD-L1 immunohistochemical (IHC) assessment. While standardized for formalin-fixed paraffin-embedded (FFPE) histological samples, PD-L1 testing on cytology remains challenging. This review aims to address the complexities of PD-L1 IHC in cytology, focusing on validation guidelines, quality assessment, cyto-histological correlation, and interobserver variability. 
Summary: This review synthesizes current guidelines and research on PD-L1 IHC in cytology; in particular, recent College of American Pathologists (CAP) guidelines emphasize the necessity for rigorous validation, particularly for non-formalin-fixed specimens. As far as cyto-histological concordance studies is concerned, the review of 48 original articles reveal significant variability in PD-L1 expression, with concordance rates ranging from 54-100% at the 1% cutoff and 82-100% at the 50% cutoff. Finally, interobserver variability, particularly in the 1-49% PD-L1 expression range, further complicates accurate assessment. The review also discusses the challenges associated with quality assessment in cytology, including the lack of standardized control materials and external quality assessment (EQA) programs specifically tailored for cytological samples.
Conclusion: PD-L1 testing on cytology presents significant challenges, including validation complexities, quality control limitations, and interobserver variability. Standardized guidelines and rigorous validation are essential to ensure accurate and reliable PD-L1 assessment in cytological specimens.