cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.g73z7e
title: Occurrence Download

description: A dataset containing 421 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phalanta phalantha",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 421 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020262-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17203166
title: Hydrogen Emissions Data (HyED)

description: Annual global hydrogen emissions by source for 1750-2022. The data includes anthropogenic emissions (e.g., from historical hydrogen demand and fossil fuel as well as biofuel combustion) and biomass burning emissions (e.g., from forest and peat fires). The estimated hydrogen demand values are also provided. Future releases may also include the data at the country level by source.
DOI: 10.15468/dl.sfxfvw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Libya",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020265-250920141307145/datasets/export for details.
DOI: 10.15468/dl.9gfvwv
title: Occurrence Download

description: A dataset containing 827 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cyclamen graecum)"
 ]
}

 The dataset includes 827 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020267-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/wcjf47ptwj
title: Reassessing DMSO–lipid interactions: Improved AMBER force fields emphasize solvent rather than bilayer effects in cryoprotection

description: Data related to the atomistic molecular dynamics study of DMPC membrane and DMSO.
DOI: 10.17632/wcjf47ptwj.1
title: Reassessing DMSO–lipid interactions: Improved AMBER force fields emphasize solvent rather than bilayer effects in cryoprotection

description: Data related to the atomistic molecular dynamics study of DMPC membrane and DMSO.
DOI: 10.17632/9myzt338gv
title: April 2024 WW3 output for Barents Sea Region

description: This dataset contains several tar files with model output. One tar file contains model output colocated with buoy observations. The model is for the Barents Sea region. The model is WAVEWATCH III(R) (Tolman 1991, WW3DG 2019). The buoy data were north of Svalbard.

The model runs and comparisons are described in this report:
https://arxiv.org/abs/2508.16755
This report is approved for public release, distribution unlimited (DoD Distribution Statement A).

Jie Yu (NRL 7322) and others are preparing a journal submission which also uses this dataset, being based on a subset of the work described in the report (specifically, this April 2024 Barents Sea model, and comparisons to observations). That journal submission will also be approved for public release, distribution unlimited (DoD Distribution Statement A).

The tar files with COAMPS2 and COAMPS3 in the file name contain output from two models runs, “COAMPS2” and “COAMPS3”.
(“COAMPS1” was a vanilla run with coarser forcing, so there is no reason to share it)
 
COAMPS2 is from WW3 using IC4M9, a S_ice formula that has dependence on ice thickness (h_ice).
It is calibrated for a different h_ice dataset than it is being applied to here. Inevitably, there will be systematic differences in the two h_ice products (they both come with major accuracy concerns), and probable need for new calibration.
 
COAMPS3 is from WW3 with IC4M6, an “old fashioned” S_ice formula that has no dependence on ice thickness. It is for a thin cover of frazil and pancake ice.

For COAMPS2 and COAMPS3, I provide the model output in three formats. You can choose the format you prefer. There is no need to download all three.
• CGRID.E1D.nc : 1d spectra on computational grid in nc format. Big files
• trck.E2D.nc : 2d spectra on buoy tracks (bounding points) in nc format. Medium size files
• trck.E1D.mat : 1d spectra on buoy tracks (bounding points) in .mat format. Readable by Matlab or Octave. Small files. 
For COAMPS2, I provide 2 additional files.
• CGRID.bulk.nc : nc files with bulk parameters, excluding model spinup period. Includes wave output (wave height, dominant direction, and integrated energy dissipation by sea ice) and regridded model forcing (ice fraction, ice thickness)
• CGRID.spinup.nc : nc files with bulk parameters during model spinup. It includes the same parameters that are included in CGRID.bulk.nc, but the wave output should be disregarded, since it is during the spinup (invalid).

COAMPS_Apr2024_colocations.tar.gz : this contains the colocations of model Hm0B with values computed from spectra measured by buoys north of Svalbard. Hm0B is the wave height computed from four different frequency bands (other names are "partial wave height" and "band height". The buoy data were provided by Jean Rabault and Malte Muller of the Norwegian Meteorological Service. A README provided in the tar file has additional details. The files are readable using Matlab or Octave. This is a very small tar file.
DOI: 10.17632/9myzt338gv.1
title: April 2024 WW3 output for Barents Sea Region

description: This dataset contains several tar files with model output. One tar file contains model output colocated with buoy observations. The model is for the Barents Sea region. The model is WAVEWATCH III(R) (Tolman 1991, WW3DG 2019). The buoy data were north of Svalbard.

The model runs and comparisons are described in this report:
https://arxiv.org/abs/2508.16755
This report is approved for public release, distribution unlimited (DoD Distribution Statement A).

Jie Yu (NRL 7322) and others are preparing a journal submission which also uses this dataset, being based on a subset of the work described in the report (specifically, this April 2024 Barents Sea model, and comparisons to observations). That journal submission will also be approved for public release, distribution unlimited (DoD Distribution Statement A).

The tar files with COAMPS2 and COAMPS3 in the file name contain output from two models runs, “COAMPS2” and “COAMPS3”.
(“COAMPS1” was a vanilla run with coarser forcing, so there is no reason to share it)
 
COAMPS2 is from WW3 using IC4M9, a S_ice formula that has dependence on ice thickness (h_ice).
It is calibrated for a different h_ice dataset than it is being applied to here. Inevitably, there will be systematic differences in the two h_ice products (they both come with major accuracy concerns), and probable need for new calibration.
 
COAMPS3 is from WW3 with IC4M6, an “old fashioned” S_ice formula that has no dependence on ice thickness. It is for a thin cover of frazil and pancake ice.

For COAMPS2 and COAMPS3, I provide the model output in three formats. You can choose the format you prefer. There is no need to download all three.
• CGRID.E1D.nc : 1d spectra on computational grid in nc format. Big files
• trck.E2D.nc : 2d spectra on buoy tracks (bounding points) in nc format. Medium size files
• trck.E1D.mat : 1d spectra on buoy tracks (bounding points) in .mat format. Readable by Matlab or Octave. Small files. 
For COAMPS2, I provide 2 additional files.
• CGRID.bulk.nc : nc files with bulk parameters, excluding model spinup period. Includes wave output (wave height, dominant direction, and integrated energy dissipation by sea ice) and regridded model forcing (ice fraction, ice thickness)
• CGRID.spinup.nc : nc files with bulk parameters during model spinup. It includes the same parameters that are included in CGRID.bulk.nc, but the wave output should be disregarded, since it is during the spinup (invalid).

COAMPS_Apr2024_colocations.tar.gz : this contains the colocations of model Hm0B with values computed from spectra measured by buoys north of Svalbard. Hm0B is the wave height computed from four different frequency bands (other names are "partial wave height" and "band height". The buoy data were provided by Jean Rabault and Malte Muller of the Norwegian Meteorological Service. A README provided in the tar file has additional details. The files are readable using Matlab or Octave. This is a very small tar file.
DOI: 10.17632/3ycbk7wk8p
title: Thermogenic Gene Expression in Human Neck Adipose Tissue in Relation to Circulating and Local Thyroid Hormone Levels

description: This repository includes supplemental data from our study "Thermogenic gene expression in human neck adipose tissue in relation to circulating and local thyroid hormone levels".
DOI: 10.17632/3ycbk7wk8p.4
title: Thermogenic Gene Expression in Human Neck Adipose Tissue in Relation to Circulating and Local Thyroid Hormone Levels

description: This repository includes supplemental data from our study "Thermogenic gene expression in human neck adipose tissue in relation to circulating and local thyroid hormone levels".
DOI: 10.15468/dl.5jfkzx
title: Occurrence Download

description: A dataset containing 1180 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is India",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1180 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020264-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6m2a5
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Madagascar",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020271-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5439/1025039
title: Eddy Correlation Flux Measurement System

description: ARM Instrument: Eddy Correlation Flux Measurement System
DOI: 10.15468/dl.jq5kz4
title: Occurrence Download

description: A dataset containing 2160 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Aneides aeneus"
 ]
}

 The dataset includes 2160 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020269-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9nt9c
title: Occurrence Download

description: A dataset containing 849 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polygonia c-aureum",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 849 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020272-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13136201
title: Images list: image list

description: All the images in EOL, with minimal metadata:



EOL content ID (can construct eol media page url, eg: https://eol.org/media/15263823)

EOL page ID (can construct eol taxon page url, eg: https://eol.org/pages/45511218)

Medium Source URL (if available, eg: https://animaldiversity.org/collections/contributors/phil_myers/ADW_birds_3_4_03/Passeriformes/Emberizidae/lark_sparrow7789/large.jpg)

EOL Full-Size Copy URL (recommended for download, eg: https://content.eol.org/data/media/be/4a/08/30.d4f396d82dcceeb0615c194f99421c0c.jpg)

License (eg: cc-by-nc-sa-3.0, see https://creativecommons.org/licenses/ for details)

Copyright Owner (unless image is in the Public Domain)


For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.5281/zenodo.17210269
title: Images list: image list

description: All the images in EOL, with minimal metadata:



EOL content ID (can construct eol media page url, eg: https://eol.org/media/15263823)

EOL page ID (can construct eol taxon page url, eg: https://eol.org/pages/45511218)

Medium Source URL (if available, eg: https://animaldiversity.org/collections/contributors/phil_myers/ADW_birds_3_4_03/Passeriformes/Emberizidae/lark_sparrow7789/large.jpg)

EOL Full-Size Copy URL (recommended for download, eg: https://content.eol.org/data/media/be/4a/08/30.d4f396d82dcceeb0615c194f99421c0c.jpg)

License (eg: cc-by-nc-sa-3.0, see https://creativecommons.org/licenses/ for details)

Copyright Owner (unless image is in the Public Domain)


For questions or use cases calling for large, multi-use aggregate data files, please visit the EOL Services forum at http://discuss.eol.org/c/eol-services
DOI: 10.15468/dl.2wjqjd
title: Occurrence Download

description: A dataset containing 39325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fragaria virginiana",
 "BasisOfRecord is one of (Specimen, Human Observation, Occurrence evidence, Material sample, Living Specimen)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 39325 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020273-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h47vq7
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Maldives",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020276-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ucd434
title: Occurrence Download

description: A dataset containing 31711 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Cyclamen hederifolium)"
 ]
}

 The dataset includes 31711 records from 297 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020275-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2a887v
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Philippines",
 "HasCoordinate is true"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020277-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yt2gxa
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Rwanda",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020278-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8va95c
title: Occurrence Download

description: A dataset containing 75 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sephisa daimio",
 "Geometry POLYGON((119.300000 20.500000, 122.100000 20.500000, 122.100000 25.400000, 119.300000 25.400000, 119.300000 20.500000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 75 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020279-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/ps7nn5sdy9
title: A multifaceted analysis of OTUD5 integrated MAVS in innate immunity of Primary Biliary Cholangitis

description: This study discovered that the OTUD5–MAVS axis is specifically overexpressed in the mononuclear macrophage subset 11 of patients with primary biliary cholangitis (PBC). These findings may offer a novel therapeutic avenue for targeting the mitochondrial antiviral signalling pathway. The objective of this study was to identify key immune cell subsets through single-cell sequencing technology, thereby establishing the molecular basis for precision immunotherapy tailored to macrophage subtypes. The constructed immune cell infiltration profile will serve as a crucial reference for the clinical differential diagnosis and personalized immune monitoring of PBC. Additionally, this study provides novel biomarkers and targets for the development of small-molecule inhibitors for patients with PBC.
DOI: 10.17632/ps7nn5sdy9.1
title: A multifaceted analysis of OTUD5 integrated MAVS in innate immunity of Primary Biliary Cholangitis

description: This study discovered that the OTUD5–MAVS axis is specifically overexpressed in the mononuclear macrophage subset 11 of patients with primary biliary cholangitis (PBC). These findings may offer a novel therapeutic avenue for targeting the mitochondrial antiviral signalling pathway. The objective of this study was to identify key immune cell subsets through single-cell sequencing technology, thereby establishing the molecular basis for precision immunotherapy tailored to macrophage subtypes. The constructed immune cell infiltration profile will serve as a crucial reference for the clinical differential diagnosis and personalized immune monitoring of PBC. Additionally, this study provides novel biomarkers and targets for the development of small-molecule inhibitors for patients with PBC.
DOI: 10.17632/7pvvh3sf45
title: Static and Dynamic Water Contact Angles, FTIR spectra and in vivo Adhesion data of Electrospun pure DegraPol® Tubes and of Tubes with Incorporated Secretome Harvested from Rabbit Adipose-Derived Stem Cell/Rabbit Achilles Tenocyte Co-Culture

description: Electrospun Tubes were characterized by static and dynamic water contact angles. We provide raw data for pure DegraPol® tubes and for DegraPol® tubes that were emulsion electrospun (water in oil emulsion) where in the small water droplets secretome was dissolved. The secretome had been previously harvested from a co-culture of rabbit adipose-derived stem cells and rabbit Achilles tenocytes in a ratio of 3:1.
In addition, we provide transmission data of Fourier Transformed Infrared Spectroscopy (FTIR) assessed spectra, taken from pure electrospun DegraPol® tubes, of emulsion electrospun DegraPol® tubes with incorporated secretome harvested from the rabbit adipose-derived stem cell/rabbit Achilles tenocyte co-culture and of poly (ethylene glycol).
Finally, we present adhesion extent data gathered from a rabbit Achilles tendon full transection model. We assessed how much of the tissue adhered to the surrounding tissue in cross sections of the rabbit Achilles tendons three weeks post operation compared to the entire circumference. The experimental groups were a) a 4-strand Becker suture, b) a 4-strand Becker suture with a pure DegraPol® tube, c) a 4-strand Becker suture, an injection of 50 microliter of a secretome harvested from a 3:1-ratio cell culture of adipose-derived stem cells:rabbit Achilles tenocytes, and a DegraPol® tube releasing such secretome, and d) the non-treated healthy rabbit Achilles tendons as a control.
DOI: 10.17632/7pvvh3sf45.1
title: Static and Dynamic Water Contact Angles, FTIR spectra and in vivo Adhesion data of Electrospun pure DegraPol® Tubes and of Tubes with Incorporated Secretome Harvested from Rabbit Adipose-Derived Stem Cell/Rabbit Achilles Tenocyte Co-Culture

description: Electrospun Tubes were characterized by static and dynamic water contact angles. We provide raw data for pure DegraPol® tubes and for DegraPol® tubes that were emulsion electrospun (water in oil emulsion) where in the small water droplets secretome was dissolved. The secretome had been previously harvested from a co-culture of rabbit adipose-derived stem cells and rabbit Achilles tenocytes in a ratio of 3:1.
In addition, we provide transmission data of Fourier Transformed Infrared Spectroscopy (FTIR) assessed spectra, taken from pure electrospun DegraPol® tubes, of emulsion electrospun DegraPol® tubes with incorporated secretome harvested from the rabbit adipose-derived stem cell/rabbit Achilles tenocyte co-culture and of poly (ethylene glycol).
Finally, we present adhesion extent data gathered from a rabbit Achilles tendon full transection model. We assessed how much of the tissue adhered to the surrounding tissue in cross sections of the rabbit Achilles tendons three weeks post operation compared to the entire circumference. The experimental groups were a) a 4-strand Becker suture, b) a 4-strand Becker suture with a pure DegraPol® tube, c) a 4-strand Becker suture, an injection of 50 microliter of a secretome harvested from a 3:1-ratio cell culture of adipose-derived stem cells:rabbit Achilles tenocytes, and a DegraPol® tube releasing such secretome, and d) the non-treated healthy rabbit Achilles tendons as a control.
DOI: 10.15468/dl.5sdetb
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plumeria rubra",
 "Country is Sao Tome and Principe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020280-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.