cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6933827.v1
title: Additional file 2: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 7220 SNPs used for linkage disequilibrium analysis and genome-wide association study including major and minor alleles. SNPs highlighted in yellow identify chromosomal regions associated with reniform nematode resistance. (XLSX 6162 kb)
DOI: 10.6084/m9.figshare.6933824.v1
title: MOESM1 of The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973

description: Additional file 1: Table S1. All information of each identified TSS. Table S2. Leaderless transcripts and mis-annotated genes. Table S3. GO terms enrichments. Table S4. KEGG pathway enrichments. Table S5. Top 10 up-regulated and top 10 down-regulated transcripts. Table S6. Transcript changes of genes associated with photosynthesis and phycobilisomes. Table S7. Transcript changes of genes associated with central metabolisms. Table S8. asRNAs and their potential target genes. Table S9. List of primers used for the amplification of probe templates.
DOI: 10.6084/m9.figshare.6933818
title: Additional file 1: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 246Â Gossypium arboreum germplasm accessions selected for genome-wide association study including the reniform nematode female index value for each accession. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6933818.v1
title: Additional file 1: of Genome-wide association study of Gossypium arboreum resistance to reniform nematode

description: The 246Â Gossypium arboreum germplasm accessions selected for genome-wide association study including the reniform nematode female index value for each accession. (XLSX 23 kb)
DOI: 10.6084/m9.figshare.6933797
title: Additional file 13 of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: : Multiple alignment of the 42 sncRNAs over represented in CAF-EXO samples. (FASTA 8 kb)
DOI: 10.6084/m9.figshare.6933797.v1
title: Additional file 13 of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: : Multiple alignment of the 42 sncRNAs over represented in CAF-EXO samples. (FASTA 8 kb)
DOI: 10.6084/m9.figshare.6933779
title: Additional file 12: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with two documents summarizing the results for the significant sncRNAs in the differential expression analysis between NF-EXO and CA-FEXO samples and target predictions for those significant in CAF-EXO samples (positive logFCs). (XLSX 292 kb)
DOI: 10.6084/m9.figshare.6933779.v1
title: Additional file 12: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with two documents summarizing the results for the significant sncRNAs in the differential expression analysis between NF-EXO and CA-FEXO samples and target predictions for those significant in CAF-EXO samples (positive logFCs). (XLSX 292 kb)
DOI: 10.6084/m9.figshare.6933755
title: Additional file 10: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with two documents summarizing the results for the significant lncRNAs in the differential expression analysis between NF-EXO and CAF-EXO samples and target predictions for those significant in CAF-EXO samples (positive logFCs). (XLS 40 kb)
DOI: 10.6084/m9.figshare.6933755.v1
title: Additional file 10: of Differential distribution and enrichment of non-coding RNAs in exosomes from normal and Cancer-associated fibroblasts in colorectal cancer

description: Excel document with two documents summarizing the results for the significant lncRNAs in the differential expression analysis between NF-EXO and CAF-EXO samples and target predictions for those significant in CAF-EXO samples (positive logFCs). (XLS 40 kb)
DOI: 10.6084/m9.figshare.6933704
title: MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies

description: Additional file 2 Feeder top. 3D CAD file of the top part of the membrane feeder.
DOI: 10.6084/m9.figshare.6933704.v1
title: MOESM2 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies

description: Additional file 2 Feeder top. 3D CAD file of the top part of the membrane feeder.
DOI: 10.6084/m9.figshare.6933695
title: MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies

description: Additional file 1. Feeder bottom. 3D CAD file of the bottom part of the membrane feeder.
DOI: 10.6084/m9.figshare.6933695.v1
title: MOESM1 of An inexpensive open source 3D-printed membrane feeder for human malaria transmission studies

description: Additional file 1. Feeder bottom. 3D CAD file of the bottom part of the membrane feeder.
DOI: 10.6084/m9.figshare.6933662
title: Additional file 5: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S5. Amino acid sequences of predicted MHC class I binding neo-peptides in 147 lung adenocarcinoma patients in this study. (XLSX 534 kb)
DOI: 10.6084/m9.figshare.6933662.v1
title: Additional file 5: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S5. Amino acid sequences of predicted MHC class I binding neo-peptides in 147 lung adenocarcinoma patients in this study. (XLSX 534 kb)
DOI: 10.6084/m9.figshare.6933650
title: Additional file 4: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S4. Amino acid sequences of predicted MHC Class II molecule HLA DRB1 binding neo-peptides in 147 lung adenocarcinoma patients in this study. (XLSX 503 kb)
DOI: 10.6084/m9.figshare.6933650.v1
title: Additional file 4: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S4. Amino acid sequences of predicted MHC Class II molecule HLA DRB1 binding neo-peptides in 147 lung adenocarcinoma patients in this study. (XLSX 503 kb)
DOI: 10.6084/m9.figshare.6933635
title: Additional file 3: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S3. Amino acid sequences of predicted MHC class I binding neo-peptides of KRAS, EGFR, TP53, and MUC16 in 147 lung adenocarcinoma patients in this study. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6933635.v1
title: Additional file 3: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S3. Amino acid sequences of predicted MHC class I binding neo-peptides of KRAS, EGFR, TP53, and MUC16 in 147 lung adenocarcinoma patients in this study. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.6933623
title: Additional file 2: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S2. Number of predicted neo-antigen peptides presented by MHC Class I molecules in 147 lung adenocarcinoma patients. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. MHC-I molecules which are significantly more frequent in presenting neo-antigens were labelled as bold according to P values. Significant levels were calculated using one sided Mann-Whitney U test. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6933623.v1
title: Additional file 2: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S2. Number of predicted neo-antigen peptides presented by MHC Class I molecules in 147 lung adenocarcinoma patients. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. MHC-I molecules which are significantly more frequent in presenting neo-antigens were labelled as bold according to P values. Significant levels were calculated using one sided Mann-Whitney U test. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.6933608
title: Additional file 1: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S1. Top mutated genes with predicted HLA Class I binding neo-peptides in 147 lung adenocarcinoma patients in this study. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. (XLSX 192 kb)
DOI: 10.6084/m9.figshare.6933608.v1
title: Additional file 1: of MHC class II restricted neoantigen peptides predicted by clonal mutation analysis in lung adenocarcinoma patients: implications on prognostic immunological biomarker and vaccine design

description: Table S1. Top mutated genes with predicted HLA Class I binding neo-peptides in 147 lung adenocarcinoma patients in this study. T cell epitopes presented by MHC Class I molecules were predicted by NetMHCPan2.4 binding algorithm. (XLSX 192 kb)
DOI: 10.6084/m9.figshare.6933548
title: Additional file 8: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Data sheet with host associations and decay mode. (XLSX 113 kb)
DOI: 10.6084/m9.figshare.6933548.v1
title: Additional file 8: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Data sheet with host associations and decay mode. (XLSX 113 kb)
DOI: 10.6084/m9.figshare.6933530
title: Additional file 7: of Evolutionary dynamics of host specialization in wood-decay fungi

description: GUIDANCE column reliability score for the maximum likelihood phylogeny. (TXT 88.5 kb)
DOI: 10.6084/m9.figshare.6933530.v1
title: Additional file 7: of Evolutionary dynamics of host specialization in wood-decay fungi

description: GUIDANCE column reliability score for the maximum likelihood phylogeny. (TXT 88.5 kb)
DOI: 10.6084/m9.figshare.6933515
title: Additional file 6: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Nexus file for the 100 alternative phylogenetic trees of the decay fungi of this study. (NEXUS 36100 kb)
DOI: 10.6084/m9.figshare.6933515.v1
title: Additional file 6: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Nexus file for the 100 alternative phylogenetic trees of the decay fungi of this study. (NEXUS 36100 kb)
DOI: 10.6084/m9.figshare.6933506
title: Additional file 2: of Length variations within the Merle retrotransposon of canine PMEL: correlating genotype with phenotype

description: Technical replicates data. Merle amplicon size in base pairs is given with corresponding signal intensity (RFU) for each technical replicate. (XLS 29Â kb)
DOI: 10.6084/m9.figshare.6933497
title: Additional file 5: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Partition scheme for the alignment. The best partition scheme was determined using IQ-Tree, and is listed here. (TXT 153 bytes)
DOI: 10.6084/m9.figshare.6933497.v1
title: Additional file 5: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Partition scheme for the alignment. The best partition scheme was determined using IQ-Tree, and is listed here. (TXT 153 bytes)
DOI: 10.6084/m9.figshare.6933488
title: Additional file 1: of Length variations within the Merle retrotransposon of canine PMEL: correlating genotype with phenotype

description: Study population data. Breed, phenotype, and M genotypes are given for all 259 dogs in our final study cohort. Merle amplicon and inferred oligo(dT) length in base pairs are given with corresponding signal intensity (RFU) for each dog for all peaks with an RFU value of 100 or greater. D, H, and S genotypes are given for select dogs. (XLS 66Â kb)
DOI: 10.6084/m9.figshare.6933479
title: Additional file 4: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Newick file for the comprehensive guide tree used for the maximum likelihood phylogeny. (TRE 27.5 kb)
DOI: 10.6084/m9.figshare.6933479.v1
title: Additional file 4: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Newick file for the comprehensive guide tree used for the maximum likelihood phylogeny. (TRE 27.5 kb)
DOI: 10.6084/m9.figshare.6933467
title: Additional file 3: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Newick file for the maximum likelihood phylogeny of the decay fungi of this study. (TRE 56.6 kb)
DOI: 10.6084/m9.figshare.6933467.v1
title: Additional file 3: of Evolutionary dynamics of host specialization in wood-decay fungi

description: Newick file for the maximum likelihood phylogeny of the decay fungi of this study. (TRE 56.6 kb)
DOI: 10.6084/m9.figshare.6933449
title: Additional file 2: of Evolutionary dynamics of host specialization in wood-decay fungi

description: The alignment used in maximum likelihood analyses. (FAS 43500 kb)
DOI: 10.6084/m9.figshare.6933449.v1
title: Additional file 2: of Evolutionary dynamics of host specialization in wood-decay fungi

description: The alignment used in maximum likelihood analyses. (FAS 43500 kb)
DOI: 10.6084/m9.figshare.6933434
title: Additional file 2: of Toward communities as systems: a sequential mixed methods study to understand factors enabling implementation of a skilled birth attendance intervention in Nampula Province, Mozambique

description: Comparison of implementer perspectives of contextual factors influencing implementation in Upper and Lower Provinces. This table provides a visualization of CFIR constructs that emerged as dominant themes in the Upper and Lower Province cases. The table compares perspectives regarding these constructs and their influence on implementation, with illustrative quotes. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6933434.v1
title: Additional file 2: of Toward communities as systems: a sequential mixed methods study to understand factors enabling implementation of a skilled birth attendance intervention in Nampula Province, Mozambique

description: Comparison of implementer perspectives of contextual factors influencing implementation in Upper and Lower Provinces. This table provides a visualization of CFIR constructs that emerged as dominant themes in the Upper and Lower Province cases. The table compares perspectives regarding these constructs and their influence on implementation, with illustrative quotes. (XLSX 48Â kb)
DOI: 10.6084/m9.figshare.6933350
title: Additional file 1: of Improving the healthcare response to domestic violence and abuse in primary care: protocol for a mixed method evaluation of the implementation of a complex intervention

description: IRIS publicity materials supplied. (ZIP 1802 kb)
DOI: 10.6084/m9.figshare.6933350.v1
title: Additional file 1: of Improving the healthcare response to domestic violence and abuse in primary care: protocol for a mixed method evaluation of the implementation of a complex intervention

description: IRIS publicity materials supplied. (ZIP 1802 kb)
DOI: 10.26180/5b6517ab522f4
title: Supplementary data-Intra-vaginal testosterone improves sexual satisfaction and vaginal symptoms associated with aromatase inhibitors. 2018.pdf

description: This table reports the clinician reported assessment outcomes for intra-vaginal testosterone vs placebo over 26 weeks in women taking an aromatase inhibitor
DOI: 10.6084/m9.figshare.6933119
title: bmrk3_6levels_pain_dataset.mat

description: p.p1 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Courier; color: #b245f3} p.p2 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Courier; min-height: 12.0px} p.p3 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Courier; color: #b245f3; min-height: 12.0px} p.p4 {margin: 0.0px 0.0px 0.0px 0.0px; font: 10.0px Courier} p.p5 {margin: 0.0px 0.0px 0.0px 0.0px; font: 12.0px Courier; min-height: 14.0px} span.s1 {color: #000000} span.s2 {color: #b245f3} This dataset includes 33 participants, with brain responses to six levels of heat (non-painful and painful). The file format is an fmri_data object from the CANlab Core Tools repository for neuroimaging data analysis. See https://canlab.github.io/ Aspects of this data appear in these papers: Wager, T.D., Atlas, L.T., Lindquist, M.A., Roy, M., Choong-Wan, W., Kross, E. (2013). An fMRI-Based Neurologic Signature of Physical Pain. The New England Journal of Medicine. 368:1388-1397 (Study 2) Woo, C. -W., Roy, M., Buhle, J. T. & Wager, T. D. (2015). Distinct brain systems mediate the effects of nociceptive input and self-regulation on pain. PLOS Biology. 13(1): e1002036. doi:10.1371/journal.pbio.1002036 Lindquist, Martin A., Anjali Krishnan, Marina López-Solà, Marieke Jepma, Choong-Wan Woo, Leonie Koban, Mathieu Roy, et al. 2015. ?Group-Regularized Individual Prediction: Theory and Application to Pain.? NeuroImage. http://www.sciencedirect.com/science/article/pii/S1053811915009982. <br>
DOI: 10.6084/m9.figshare.6933086
title: Imbibition process (H2O into dry) - sample IGSN: IEETV0002 deformed

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6933086.v1
title: High-spee Neutron Tomography sample IEETV0002 deformed H2O into dry

description: High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6933086.v2
title: High-spee Neutron Tomography sample IEETV0002 deformed H2O into dry

description: High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6933086.v3
title: High-spee Neutron Tomography sample IEETV0002 deformed H2O into dry

description: High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6933086.v4
title: High-spee Neutron Tomography sample IEETV0002 deformed H2O into dry

description: High speed neutron tomography (1 minute) of imbibition process into deformed sample
DOI: 10.6084/m9.figshare.6933086.v5
title: Imbibition process (H2O into dry) - sample IEETV0002 deformed

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6933086.v7
title: Imbibition process (H2O into dry) - sample IGSN: IEETV0002 deformed

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6933086.v6
title: Imbibition process (H2O into dry) - sample IGSN: IEETV0002 deformed

description: - High speed neutron tomography (1 minute) of imbibition process into deformed sample- Water Front detected every 2 minutes- Flow speed calculated from distance maps (values in µm/s)
DOI: 10.6084/m9.figshare.6932915
title: Supplemental Material for Fedotova et al., 2018

description: Figures S1 and S2, Table S1
DOI: 10.6084/m9.figshare.6932915.v1
title: Supplemental Material for Fedotova et al., 2018

description: Figures S1 and S2, Table S1
DOI: 10.6084/m9.figshare.6932888
title: miR-146a Suppresses SUMO1 Expression and Induces Cardiac Dysfunction in Maladaptive Hypertrophy

description: <b>Table I. </b>Calcium transient and contractility parameters of cardiomyocytes infected with Ad_pre-mir-146a or Ad_decoy-146a.<b> </b> <b>Top table</b>, isolated mouse cardiomyocytes were infected with Ad_pre-mir-146a (MOI=50) for 24h. Data represent the mean ± s.e.m. in all panels (n=100-150 cells/4 hearts). <b>Bottom table</b>, isolated mouse cardiomyocytes were infected with Ad_decoy-146a (MOI=50) for 24h. Data represent the mean ± s.e.m. in all panels (n=100-150 cells/4 hearts). <b>Table II. </b>Echocardiographic parameters of mice injected with rAAV9_pre-mir-146a. Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table III. </b>Hemodynamic parameters of mice injected with rAAV9_pre-mir-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. Max dPdt, maximum dP/dt; Min dPdt, minimum dP/dt. <b>Table IV. </b>Echocardiographic parameters of mice injected with rAAV9_decoy-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table V. </b>Hemodynamic parameters of mice injected with rAAV9_decoy-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 4 weeks post-injection. <b>Table VI. </b>Echocardiographic parameters of SUMO1 TG mice injected with rAAV9_pre-mir-146a.<b> </b> Data represent the mean ± s.e.m. of cardiac functional parameters 8 weeks post-injection. NL, Negative littermate; SUMO1 TG, Cardiac-specific Cre/loxP-conditional <i>Sumo1</i>-transgenic mice<b>Table VII. </b>Cardiac cellular composition. Isolated cardiac cells were sorted with FACS and analyzed. Data represent the mean ± s.e.m. (n=5).
DOI: 10.6084/m9.figshare.6932882
title: Filtlong40 reads

description: These read sets were produced from our Albacore+Porechop reads, filtered down to 40x coverage of the highest quality and longest reads by Filtlong
DOI: 10.6084/m9.figshare.6932882.v1
title: Filtlong40 reads

description: These read sets were produced from our Albacore+Porechop reads, filtered down to 40x coverage of the highest quality and longest reads by Filtlong
DOI: 10.6084/m9.figshare.6932753
title: Dataset from 'Differential effects of biological invasions on coastal blue carbon: A global review and meta-analysis'

description: This is the dataset used for the meta-analysis conducted in 'Differential effects of biological invasions on coastal blue carbon: A global review and meta-analysis'
DOI: 10.6084/m9.figshare.6932795
title: Canu-corrected reads

description: The read sets here were produced from our Albacore+Porechop reads, corrected with Canu.
DOI: 10.6084/m9.figshare.6932753.v1
title: Dataset from 'Differential effects of biological invasions on coastal blue carbon: A global review and meta-analysis'

description: This is the dataset used for the meta-analysis conducted in 'Differential effects of biological invasions on coastal blue carbon: A global review and meta-analysis'
DOI: 10.6084/m9.figshare.6932795.v1
title: Canu-corrected reads

description: The read sets here were produced from our Albacore+Porechop reads, corrected with Canu.
DOI: 10.6084/m9.figshare.6931439
title: Streptococcus pyogenes PopPUNK database

description: Database for assigning cluster ID to new S. pyogenes isolates.First extract:tar xf GAS_query_v2.tar.bz2<br>Then assign new genomes:poppunk --assign-query --ref-db GAS_query_v2 --distances GAS_query_v2/GAS_query_v2.dists --model-dir GAS_query_v2 --q-files query.list --output GAS_assignment --threads 8<br><br>Where query.list is a list of the assemblies to assign<br>