cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/jupfkf
title: Quantitative Invertebrate megabenthic data from the Nansen Legacy project collected in 2018 cruise JC2-1 with bottom Campelen trawl from R/V Kronprins Haakon.

description: Mega-benthos was sampled from the seabed by the Nansen Legacy joint cruise 1-2, on R/V Kronprins Haakon, 6-23 August 2018 (Cruise 2018707). 
A Campelen 1800 bottom trawl was used after rigged with rock-hopper ground gear and towed on double warps. The mesh size was 80 mm (stretched) in the front and 16–22 mm in the cod end. The horizontal opening was 11.7 m, and the vertical opening 4 –5 m. The trawl configuration and bottom contact was monitored remotely by SCANMAR trawl sensors. 
The standard procedure is to tow 15 min after the trawl had contacted the bottom with towing speed of 3 knots, equivalent to a towing distance of 0.75 nautical miles (1.4 km) during a 15 min tow. 
The trawl settings allow the capture and retention of small-sized fish and the largest benthos (benthic megafauna) from the seabed. In addition, the trawl may also be contaminated by organisms entering the trawl when it is lowered or heaved.
The sample was sorted, and each benthos taxon was counted and weighted (i.e., biomass is wet mass) and identified to closest possible taxa onboard the ship. The count of individuals per species/taxa in the trawl (Tot abun) and the wet-weight of the individuals per species/taxa in the trawl (Tot weight (kg)) was recorded.
A total of 100 taxa (14 phyla, 28 taxonomic groups), were recorded with 30-46 taxa at each of the five stations. A total of 193 kg mega-benthos was collected with 15 to 88 kg wet weight per station. A total of 40.661 individuals were collected with 2.219 to 18.086 individuals per station.
The hauls were standardized to a fixed sampling effort of one nautical mile: abundance per species/taxon as number of individuals per nautical mile and biomass per species/taxon as kg wet weight per nautical mile.
DOI: 10.15468/dl.qkt3av
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monostylis goeldiana A.S.Tav."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001676-241125135418005/datasets/export for details.
DOI: 10.15468/dl.f979en
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Allocheilos guangxiensis H.Q.Wen, Y.G.Wei & S.H.Zhong)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001677-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rh4e25
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monostylis goeldiana A.S.Tav."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001678-241125135418005/datasets/export for details.
DOI: 10.6084/m9.figshare.27907836
title: Supplementary Material for: Single-cell transcriptome sequencing and analysis provide a new approach for the treatment of small cell neuroendocrine carcinoma of the cervix

description: Introduction: Small cell neuroendocrine carcinoma of the cervix (SCNECC) is a rare gynecologic malignant tumor, which is lack of systematic research. In order to investigate its molecular characteristics, origin and pathogenesis, single-cell transcriptome sequencing (scRNA-Seq) of SCNECC were performed for the first time, the cellular and molecular landscape was revealed and the key genes for clinical prognosis were screened.
Methods: This article initially performed the scRNA-Seq on a tumor tissue sample from a SCNECC patient, combined with scRNA-Seq data from a healthy cervical tissue sample downloaded from public database, the single-cell transcriptome landscape was constructed. Then, we investigated the cell types, intratumoral heterogeneity, characteristics of tumor microenvironment and potential predictive markers of SCNECC.
Results: We identified two malignant cell populations, tumor stem cells and malignant carcinoma cells, and revealed two tumor progression pathways of SCNECC. By analyzing gene expression levels in the pathophysiology of SCNECC, we found that the expression levels of ERBB4 and NRG1, as well as the expression profile of mTOR signaling pathway mediated by them, were significantly upregulated in malignant carcinoma cells. In addition, we also found that carcinoma cells were able to stimulate malignant cell proliferation through FN1 signaling pathway. The immune cells were in a stress state, with T cell depletion, macrophage polarization and mast cell glycolysis, these results suggested that carcinoma cells could interfere immune response and promote tumor escape through MIF, TGFb and other immunosuppressive related signaling pathways.
Conclusion: This study revealed the mechanism of genesis and progression in SCNECC and the related important signaling pathways, such as mTOR, and provided new insights into the treatment of SCNECC.
DOI: 10.6084/m9.figshare.27907836.v1
title: Supplementary Material for: Single-cell transcriptome sequencing and analysis provide a new approach for the treatment of small cell neuroendocrine carcinoma of the cervix

description: Introduction: Small cell neuroendocrine carcinoma of the cervix (SCNECC) is a rare gynecologic malignant tumor, which is lack of systematic research. In order to investigate its molecular characteristics, origin and pathogenesis, single-cell transcriptome sequencing (scRNA-Seq) of SCNECC were performed for the first time, the cellular and molecular landscape was revealed and the key genes for clinical prognosis were screened.
Methods: This article initially performed the scRNA-Seq on a tumor tissue sample from a SCNECC patient, combined with scRNA-Seq data from a healthy cervical tissue sample downloaded from public database, the single-cell transcriptome landscape was constructed. Then, we investigated the cell types, intratumoral heterogeneity, characteristics of tumor microenvironment and potential predictive markers of SCNECC.
Results: We identified two malignant cell populations, tumor stem cells and malignant carcinoma cells, and revealed two tumor progression pathways of SCNECC. By analyzing gene expression levels in the pathophysiology of SCNECC, we found that the expression levels of ERBB4 and NRG1, as well as the expression profile of mTOR signaling pathway mediated by them, were significantly upregulated in malignant carcinoma cells. In addition, we also found that carcinoma cells were able to stimulate malignant cell proliferation through FN1 signaling pathway. The immune cells were in a stress state, with T cell depletion, macrophage polarization and mast cell glycolysis, these results suggested that carcinoma cells could interfere immune response and promote tumor escape through MIF, TGFb and other immunosuppressive related signaling pathways.
Conclusion: This study revealed the mechanism of genesis and progression in SCNECC and the related important signaling pathways, such as mTOR, and provided new insights into the treatment of SCNECC.
DOI: 10.5281/zenodo.14163705
title: Fatal Lassa fever in cynomolgus monkeys is associated with systemic viral dissemination and inflammation

description: Transcriptomic data associated to the article "Fatal Lassa fever in cynomolgus monkeys is associated with systemic viral dissemination and inflammation" submitted to PLOS Pathogens (Hortion et al.). The name of the tissue or organ is specified into the prefix of the files and in the samples names. Each dataset needs 2 files to be analyzed : the target file, containing the experimental design, and the counts table, containing the number of reads mapping on each gene of the Macaca fascicularis genome. More bioinformatic and statistical analysis details are given in the article manuscript.
DOI: 10.5281/zenodo.14163706
title: Fatal Lassa fever in cynomolgus monkeys is associated with systemic viral dissemination and inflammation

description: Transcriptomic data associated to the article "Fatal Lassa fever in cynomolgus monkeys is associated with systemic viral dissemination and inflammation" submitted to PLOS Pathogens (Hortion et al.). The name of the tissue or organ is specified into the prefix of the files and in the samples names. Each dataset needs 2 files to be analyzed : the target file, containing the experimental design, and the counts table, containing the number of reads mapping on each gene of the Macaca fascicularis genome. More bioinformatic and statistical analysis details are given in the article manuscript.
DOI: 10.15468/dl.9xknwg
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Wasmannia auropunctata (Roger, 1863)",
 "Country is French Polynesia",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001679-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z47pyf
title: Occurrence Download

description: A dataset containing 339 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidion eques (Günther, 1887)"
 ]
}

 The dataset includes 339 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015712-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kf5azd
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Allocheilos guangxiensis H.Q.Wen, Y.G.Wei & S.H.Zhong)"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001680-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u3d8zp
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Corylopsis yui Hu & W.C.Cheng)"
 ]
}

 The dataset includes 28 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001681-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9pwhnc
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-145.78778 8.99390,-43.21222 8.99390,-43.21222 50.00610,-145.78778 50.00610,-145.78778 8.99390))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sylvilagus cunicularius (Waterhouse, 1848)",
 "Year 2024-2024"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001671-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q8axr3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monostylis goeldiana A.S.Tav."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001682-241125135418005/datasets/export for details.
DOI: 10.15468/dl.et5jn2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Allocheilos maguanensis W.H.Chen & Y.M.Shui)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001683-241125135418005/datasets/export for details.
DOI: 10.15468/dl.3uwurm
title: Occurrence Download

description: A dataset containing 30 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Corylopsis yunnanensis Diels)"
 ]
}

 The dataset includes 30 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001684-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4uy3f
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monostylis paraensis A.S.Tav."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001685-241125135418005/datasets/export for details.
DOI: 10.15468/dl.crjnyc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is one of (Allocheilos rubroglandulosus W.H.Chen & Y.M.Shui)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001686-241125135418005/datasets/export for details.
DOI: 10.5281/zenodo.14221375
title: Generation Of Quasi-periodic Dayside Medium Scale Traveling Ionospheric Disturbances (MSTIDs) By Intermittent Lobe Reconnection
title: Generation Of Quasi-periodic Dayside Medium Scale Traveling Ionospheric Disturbances (MSTIDs) By Intermittent Lobe Reconnection

description: We acknowledge the use of SuperDARN data. SuperDARN is a collection of radars funded by national scientific funding agencies of Australia, Canada, China,France, Italy, Japan, Norway, South Africa, United Kingdom, and the United States of America. We acknowledge the use of DMSP/SSUSI data provided by the Johns Hopkins University Applied Physics Laboratory (https://cdaweb.gsfc.nasa.gov). Additionally, the OMNI data set is available from the OMNIWeb service online of NASA/GSFC's Space Physics Data Facility' s(https://spdf.gsfc.nasa.gov/pub/data/omni/).The ground-based magnetic field measurements are accessible via the IMAGE Magnetometer network (https://space.fmi.fi/image/).We would like to thank N.A. Frissell for providing the complete code for the MUSIC (MUltiple SIgnal Classification) algorithm (https://github.com/HamSCI/pyDARNmusic).
DOI: 10.5281/zenodo.14221376
title: Generation Of Quasi-periodic Dayside Medium Scale Traveling Ionospheric Disturbances (MSTIDs) By Intermittent Lobe Reconnection
title: Generation Of Quasi-periodic Dayside Medium Scale Traveling Ionospheric Disturbances (MSTIDs) By Intermittent Lobe Reconnection

description: We acknowledge the use of SuperDARN data. SuperDARN is a collection of radars funded by national scientific funding agencies of Australia, Canada, China,France, Italy, Japan, Norway, South Africa, United Kingdom, and the United States of America. We acknowledge the use of DMSP/SSUSI data provided by the Johns Hopkins University Applied Physics Laboratory (https://cdaweb.gsfc.nasa.gov). Additionally, the OMNI data set is available from the OMNIWeb service online of NASA/GSFC's Space Physics Data Facility' s(https://spdf.gsfc.nasa.gov/pub/data/omni/).The ground-based magnetic field measurements are accessible via the IMAGE Magnetometer network (https://space.fmi.fi/image/).We would like to thank N.A. Frissell for providing the complete code for the MUSIC (MUltiple SIgnal Classification) algorithm (https://github.com/HamSCI/pyDARNmusic).
DOI: 10.6084/m9.figshare.13050714
title: Sex-based differences in outcomes of patients with HPV-positive versus HPV-negative oropharyngeal carcinoma: a population-based study

description: Prior studies have suggested that female sex is predictive of poor outcomes among patients with oropharyngeal carcinoma. The current study aims at elucidating whether this observation applies to both HPV-positive and HPV-negative subsets of the disease. Surveillance, Epidemiology and End Results (SEER) - HPV specialized database was accessed. Cases with oropharyngeal squamous cell carcinoma and known HPV status were reviewed. Multivariable logistic regression analysis was used to evaluate factors predicting HPV positive status. The relationship between sex and overall and cancer-specific survival was further evaluated through multivariable Cox regression analysis. Female sex was associated with less probability of HPV positive status (OR: 0.55; 95% CI: 0.50-0.61; P&lt;0.01). Using multivariable Cox regression analysis and among patients with HPV-negative disease, female patients have worse overall survival (HR: 1.24; 95% CI: 1.12-1.39; P&lt;0.01) and cancer-specific survival (HR: 1.27; 95% CI: 1.08-1.50; P&lt;0.01); while among patients with HPV-positive disease, there was no difference between males and females with regards to overall survival (HR: 1.05; 95% CI: 0.91-1.21; P= 0.45) or cancer-specific survival (HR: 1.17; 95% CI: 0.95-1.45; P= 0.12). Among patients with HPV-positive oropharyngeal carcinoma, there is no difference in survival outcomes between women and men; while among patients with HPV-negative oropharyngeal carcinoma, women have worse survival outcomes compared to men.
DOI: 10.6084/m9.figshare.13050714.v1
title: Sex-based differences in outcomes of patients with HPV-positive versus HPV-negative oropharyngeal carcinoma: a population-based study

description: Prior studies have suggested that female sex is predictive of poor outcomes among patients with oropharyngeal carcinoma. The current study aims at elucidating whether this observation applies to both HPV-positive and HPV-negative subsets of the disease. Surveillance, Epidemiology and End Results (SEER) - HPV specialized database was accessed. Cases with oropharyngeal squamous cell carcinoma and known HPV status were reviewed. Multivariable logistic regression analysis was used to evaluate factors predicting HPV positive status. The relationship between sex and overall and cancer-specific survival was further evaluated through multivariable Cox regression analysis. Female sex was associated with less probability of HPV positive status (OR: 0.55; 95% CI: 0.50-0.61; P&lt;0.01). Using multivariable Cox regression analysis and among patients with HPV-negative disease, female patients have worse overall survival (HR: 1.24; 95% CI: 1.12-1.39; P&lt;0.01) and cancer-specific survival (HR: 1.27; 95% CI: 1.08-1.50; P&lt;0.01); while among patients with HPV-positive disease, there was no difference between males and females with regards to overall survival (HR: 1.05; 95% CI: 0.91-1.21; P= 0.45) or cancer-specific survival (HR: 1.17; 95% CI: 0.95-1.45; P= 0.12). Among patients with HPV-positive oropharyngeal carcinoma, there is no difference in survival outcomes between women and men; while among patients with HPV-negative oropharyngeal carcinoma, women have worse survival outcomes compared to men.
DOI: 10.15468/dl.xbxtxr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Monostylis paraensis A.S.Tav."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001687-241125135418005/datasets/export for details.
DOI: 10.3886/e197843v1-159701
title: Data and Code for Organized Crime and Economic Growth: Evidence from Municipalities Infiltrated by the Mafia

description: This paper studies the long-run economic impact of dismissing city councils infiltrated by organized crime. Applying a matched difference-in-differences design to the universe of Italian social security records, we find that city council dismissals (CCDs) increase employment, the number of firms, and industrial real estate prices. The effects are concentrated in Mafia-dominated sectors and in municipalities where fewer incumbents are re-elected. The dismissals generate large economic returns by weakening the Mafia and fostering trust in local institutions. The analysis suggests that CCDs represent an effective intervention for establishing legitimacy and spurring economic activity in areas dominated by organized crime.
DOI: 10.3886/e197843v1-159702
title: Data and Code for Organized Crime and Economic Growth: Evidence from Municipalities Infiltrated by the Mafia

description: This paper studies the long-run economic impact of dismissing city councils infiltrated by organized crime. Applying a matched difference-in-differences design to the universe of Italian social security records, we find that city council dismissals (CCDs) increase employment, the number of firms, and industrial real estate prices. The effects are concentrated in Mafia-dominated sectors and in municipalities where fewer incumbents are re-elected. The dismissals generate large economic returns by weakening the Mafia and fostering trust in local institutions. The analysis suggests that CCDs represent an effective intervention for establishing legitimacy and spurring economic activity in areas dominated by organized crime.
DOI: 10.5281/zenodo.14039473
title: Superior Survival of Fully Cemented Fixation Compared to Hybrid Fixation in a Single Design Rotating Hinge Knee Implant

description: Dataset with 275 RT-PLUS® rotating hinge knee implants (Smith and Nephew, Memphis, TN, USA) in 269 patients (60 primary procedures, 215 revisions). Of the 275 implants, 248 had a uniform fixation technique for both components (148 fully hybrid, 100 fully cemented), while 27 implants had a mixed fixation technique for the components (15 hybrid femur and fully cemented tibia, 12 fully cemented femur and hybrid tibia). Outcome was revision for aspectic loosening. The median follow-up was 7.3 ± 3.9 years, with a minimum of 2 years for non-failed implants.
DOI: 10.5281/zenodo.14039474
title: Superior Survival of Fully Cemented Fixation Compared to Hybrid Fixation in a Single Design Rotating Hinge Knee Implant

description: Dataset with 275 RT-PLUS® rotating hinge knee implants (Smith and Nephew, Memphis, TN, USA) in 269 patients (60 primary procedures, 215 revisions). Of the 275 implants, 248 had a uniform fixation technique for both components (148 fully hybrid, 100 fully cemented), while 27 implants had a mixed fixation technique for the components (15 hybrid femur and fully cemented tibia, 12 fully cemented femur and hybrid tibia). Outcome was revision for aspectic loosening. The median follow-up was 7.3 ± 3.9 years, with a minimum of 2 years for non-failed implants.