cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.5turx9
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plecotus gaisleri Benda, Kiefer, Hanak & Veith, 2004",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080397-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w9dkpc
title: Occurrence Download

description: A dataset containing 5752 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Metellina merianae (Scopoli, 1763)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 5752 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080398-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j28ue2
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Diasemocera nana (Loew, 1860)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 16 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080399-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hr5jeq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Brachydesmus dolinensis Attems, 1898",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080400-240626123714530/datasets/export for details.
DOI: 10.15468/dl.v7h64x
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spermophilus suslicus (Güldenstaedt, 1770)",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 149 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080401-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y4cngs
title: Occurrence Download

description: A dataset containing 113551 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lacerta agilis Linnaeus, 1758",
 "HasCoordinate is true",
 "Year is greater than or equal to 2011",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 113551 records from 446 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080378-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7347792
title: A common NFKB1 variant detected through antibody analysis in UK Biobank predicts risk of infection and allergy: Summary statistics - Health records

description: Infectious agents contribute significantly to the global burden of diseases, through both acute infection and their chronic sequelae. We leveraged the UK Biobank to identify genetic loci that influence humoral immune response to multiple infections. From 45 genome-wide association studies in 9,611 participants from UK Biobank, we identified NFKB1 as a locus associated with quantitative antibody responses to multiple pathogens including those from the herpes, retro- and polyoma-virus families. An insertion-deletion variant thought to affect NFKB1 expression (rs28362491), was mapped as the likely causal variant. This variant has persisted throughout hominid evolution and could play a key role in regulation of the immune response. Using 121 infection and inflammation related traits in 487,297 UK Biobank participants, we show that the deletion allele was associated with an increased risk of infection from diverse pathogens but had a protective effect against allergic disease. We propose that altered expression of NFKB1, as a result of the deletion, modulates haematopoietic pathways, and likely impacts cell survival, antibody production, and inflammation. Taken together, we show that disruptions to the tightly regulated immune processes may tip the balance between exacerbated immune responses and allergy, or increased risk of infection and impaired resolution of inflammation. 


-------------------------------------------------------------------------------------


This dataset contains GWAS summary statistics for infection, inflammation, and allergy related traits in 487,297 individuals
DOI: 10.5281/zenodo.8314360
title: Age-, gender- and body site-specific reference values of thermal Quantitative Sensory Testing in the Italian population using the Q-Sense device

description: Normative values from 84 healthy volunteers (42 males / 42 females) of the following thermal quantitative sensory testing (QST) measures: warm detection threshold (WDT), cold detection thresholds (CDT), heat pain threshold (HPT). All measures were recorded in three different body sites: the right trigeminal supraorbital region, the right hand thenar, and the right foot dorsum. Both methods of limits and levels were used in individual subjects to assess WDT and CDT.
DOI: 10.5281/zenodo.8314361
title: Age-, gender- and body site-specific reference values of thermal Quantitative Sensory Testing in the Italian population using the Q-Sense device

description: Normative values from 84 healthy volunteers (42 males / 42 females) of the following thermal quantitative sensory testing (QST) measures: warm detection threshold (WDT), cold detection thresholds (CDT), heat pain threshold (HPT). All measures were recorded in three different body sites: the right trigeminal supraorbital region, the right hand thenar, and the right foot dorsum. Both methods of limits and levels were used in individual subjects to assess WDT and CDT.
DOI: 10.6084/m9.figshare.24972603
title: Genotyping and Pre-treatment drug resistance surveillance among ART- naive HIV-1 patients in Tunisia

description: Drug resistance to Human Immunodeficiency Virus (HIV) is a major factor of treatment failure. The resistance monitoring before treatment allows to avoid the first-line antiretroviral therapy failure and improves treatment outcomes. Very little data are available about the prevalence of HIV drug-resistance in Tunisia, especially among ART-naïve people. In this study, we aim to investigate HIV-1 primary drug resistance patterns of reverse transcriptase (RT) and protease (PR), using Sanger sequencing Technology. For that, we partially sequenced 77 viral RNA samples collected from 77 treatment-naïve Tunisian and African PLHIV, using The Applied Biosystems™ HIV-1 Genotyping Kit allowing the genotyping of the RT and PRregions of the HIV-1 pol gene.
DOI: 10.6084/m9.figshare.24972603.v1
title: Genotyping and Pre-treatment drug resistance surveillance among ART- naive HIV-1 patients in Tunisia

description: Drug resistance to Human Immunodeficiency Virus (HIV) is a major factor of treatment failure. The resistance monitoring before treatment allows to avoid the first-line antiretroviral therapy failure and improves treatment outcomes. Very little data are available about the prevalence of HIV drug-resistance in Tunisia, especially among ART-naïve people. In this study, we aim to investigate HIV-1 primary drug resistance patterns of reverse transcriptase (RT) and protease (PR), using Sanger sequencing Technology. For that, we partially sequenced 77 viral RNA samples collected from 77 treatment-naïve Tunisian and African PLHIV, using The Applied Biosystems™ HIV-1 Genotyping Kit allowing the genotyping of the RT and PRregions of the HIV-1 pol gene.
DOI: 10.23729/19ab75df-c4e6-4a20-9c84-83d8b272d83f
title: Thin walls and overhangs preview

description: The data is part of a study published in: Reijonen, J., Revuelta, A., Metsä-Kortelainen, S., Salminen, A. Effect of hard and soft re-coater blade on porosity and processability of thin walls and overhangs in laser powder bed fusion additive manufacturing. Int J Adv Manuf Technol (2023). https://doi.org/10.1007/s00170-023-12853-5 . Please refer to this article for all the experimental details; how the data was acquired, processed, and used. For any re-use of the data, please cite the original publication. The speciments are as follows [ID, blade type, features, orientation]:
- Ajo461_1, soft blade, thin walls, 0 deg
- Ajo461_2, soft blade, overhangs, 90 deg
- Ajo461_3, soft blade, thin walls, 90 deg
- Ajo461_4, soft blade, thin walls, 45 deg
- Ajo461_5 soft blade, overhangs, 0 deg
- Ajo463_1, hard blade, thin walls, 0 deg
- Ajo463_2, hard blade, overhangs, 90 deg
- Ajo463_3, hard blade, thin walls, 90 deg
- Ajo463_4, hard blade, thin walls, 45 deg
- Ajo463_5, hard blade, overhangs, 0 deg

Preview of PAS-dataset https://doi.org/10.23729/b5d7b781-86e6-4794-b9ff-1a3cbf7e8548
DOI: 10.6084/m9.figshare.24499936.v7
title: <b>Empirical Models of The Lowest Cutoff Altitude of Equatorial Hiss under Different Geomagnetic Conditions</b>

description: These data are plotted in Figures 1 - 3 and Figure S1.
DOI: 10.6084/m9.figshare.24972852
title: Supplementary Material for: Joint linkage and association analysis using GENEHUNTER-MODSCORE with an application to familial pancreatic cancer

description: Introduction: Joint linkage and association (JLA) analysis combines two disease gene mapping strategies: linkage information contained in families and association information contained in populations. Such a JLA analysis can increase mapping power, especially when the evidence for both linkage and association is low to moderate. Similarly, an association analysis based on haplotypes instead of single markers can increase mapping power when the association pattern is complex. Methods: In this paper, we present an extension to the GENEHUNTER-MODSCORE software package that enables a JLA analysis based on haplotypes and uses information from arbitrary pedigree types and unrelated individuals. Our new JLA method is an extension of the MOD score approach for linkage analysis, which allows the estimation of trait-model and linkage disequilibrium (LD) parameters, i.e., penetrance, disease-allele frequency, and haplotype frequencies. LD is modelled between alleles at a single diallelic disease locus and up to three diallelic test markers. Linkage information is contributed by additional multi-allelic flanking markers. We investigated the statistical properties of our JLA implementation using extensive simulations, and we compared our approach to another commonly used single-marker JLA test. To demonstrate the applicability of our new method in practice, we analyzed pedigree data from the German National Case Collection for Familial Pancreatic Cancer (FaPaCa). Results: Based on the simulated data, we demonstrated the validity of our JLA MOD score analysis implementation and identified scenarios in which haplotype-based tests outperformed the single-marker test. The estimated trait-model and LD parameters were in good accordance with the simulated values. Our method outperformed another commonly used JLA single-marker test when the LD pattern was complex. The exploratory analysis of the FaPaCa families led to the identification of a promising genetic region on chromosome 22q13.33, which can serve as a starting point for future mutation analysis and molecular research in pancreatic cancer. Conclusion: Our newly proposed JLA MOD score method proves to be a valuable gene mapping and characterization tool, especially when either linkage or association information alone provide insufficient power to identify the disease-causing genetic variants.
DOI: 10.6084/m9.figshare.24972852.v1
title: Supplementary Material for: Joint linkage and association analysis using GENEHUNTER-MODSCORE with an application to familial pancreatic cancer

description: Introduction: Joint linkage and association (JLA) analysis combines two disease gene mapping strategies: linkage information contained in families and association information contained in populations. Such a JLA analysis can increase mapping power, especially when the evidence for both linkage and association is low to moderate. Similarly, an association analysis based on haplotypes instead of single markers can increase mapping power when the association pattern is complex. Methods: In this paper, we present an extension to the GENEHUNTER-MODSCORE software package that enables a JLA analysis based on haplotypes and uses information from arbitrary pedigree types and unrelated individuals. Our new JLA method is an extension of the MOD score approach for linkage analysis, which allows the estimation of trait-model and linkage disequilibrium (LD) parameters, i.e., penetrance, disease-allele frequency, and haplotype frequencies. LD is modelled between alleles at a single diallelic disease locus and up to three diallelic test markers. Linkage information is contributed by additional multi-allelic flanking markers. We investigated the statistical properties of our JLA implementation using extensive simulations, and we compared our approach to another commonly used single-marker JLA test. To demonstrate the applicability of our new method in practice, we analyzed pedigree data from the German National Case Collection for Familial Pancreatic Cancer (FaPaCa). Results: Based on the simulated data, we demonstrated the validity of our JLA MOD score analysis implementation and identified scenarios in which haplotype-based tests outperformed the single-marker test. The estimated trait-model and LD parameters were in good accordance with the simulated values. Our method outperformed another commonly used JLA single-marker test when the LD pattern was complex. The exploratory analysis of the FaPaCa families led to the identification of a promising genetic region on chromosome 22q13.33, which can serve as a starting point for future mutation analysis and molecular research in pancreatic cancer. Conclusion: Our newly proposed JLA MOD score method proves to be a valuable gene mapping and characterization tool, especially when either linkage or association information alone provide insufficient power to identify the disease-causing genetic variants.
DOI: 10.17909/cz0v-kp41
title: 2MASS J05592237+482343 TESS data
DOI: 10.5281/zenodo.10477851
title: datapackage_thesis

description: Dataset used for data analysis in Thesis research at Tilburg University
DOI: 10.5281/zenodo.10477852
title: datapackage_thesis

description: Dataset used for data analysis in Thesis research at Tilburg University
DOI: 10.5281/zenodo.10477995
title: datapackage_thesis

description: Dataset used for data analysis in Thesis research at Tilburg University
DOI: 10.6084/m9.figshare.24972807
title: THE MORE ENGAGED YOU ARE, THE HARDIER YOU BECOME:TESTING THE CROSS-LAGGED MEDIATIONAL EFFECT OF JOB CRAFTING ON WORK ENGAGEMENT – HARDINESS RELATIONSHIP

description: The database consists of several psychological scales:(1) the Utrecht Work Engagement Scale (UWES; Schaufeli et al., 2002).wave 1 - items: UWES_1 to UWES_17wave 2 - items: f2UWES_1 to f2UWES_17wave 3 - items: f3UWES_1 to f3UWES_17(2) the Job Crafting Scale (JCS, Tims et al., 2012).wave 1 - items: JCS_1 to JCS_21wave 2 - items: f2JCS_1 to f2JCS_21wave 3 - items: f3JCS_1 to f3JCS_21(3) Occupational Hardiness was measured with the Occupational Hardiness Questionnaire (OHQ, Moreno-Jiménez et al., 2014). It features 15 items, five for each subscalewave 1 - items: OHQ_1 to OHQ_15wave 2 - items: f2OHQ_1 to f2OHQ_15wave 3 - items: f3OHQ_1 to f3OHQ_15plus sociodemographical variables: age, profession, gender, seniority at work, position, employment sector, profession, Town/City in Poland, Voivodeship in Poland, and indexes for main constructs based on average<br>
DOI: 10.6084/m9.figshare.24972807.v1
title: THE MORE ENGAGED YOU ARE, THE HARDIER YOU BECOME:TESTING THE CROSS-LAGGED MEDIATIONAL EFFECT OF JOB CRAFTING ON WORK ENGAGEMENT – HARDINESS RELATIONSHIP

description: The database consists of several psychological scales:(1) the Utrecht Work Engagement Scale (UWES; Schaufeli et al., 2002).wave 1 - items: UWES_1 to UWES_17wave 2 - items: f2UWES_1 to f2UWES_17wave 3 - items: f3UWES_1 to f3UWES_17(2) the Job Crafting Scale (JCS, Tims et al., 2012).wave 1 - items: JCS_1 to JCS_21wave 2 - items: f2JCS_1 to f2JCS_21wave 3 - items: f3JCS_1 to f3JCS_21(3) Occupational Hardiness was measured with the Occupational Hardiness Questionnaire (OHQ, Moreno-Jiménez et al., 2014). It features 15 items, five for each subscalewave 1 - items: OHQ_1 to OHQ_15wave 2 - items: f2OHQ_1 to f2OHQ_15wave 3 - items: f3OHQ_1 to f3OHQ_15plus sociodemographical variables: age, profession, gender, seniority at work, position, employment sector, profession, Town/City in Poland, Voivodeship in Poland, and indexes for main constructs based on average<br>
DOI: 10.5281/zenodo.10401771
title: UKESM1 data supporting N2O Emission Mitigation Study

description: This repository contains models data from UKESM1 supporting the study exmaining the impact of reducing N2O emissions (via LBC adjustment) on stratospheric O3 for 2025-2075 under SSP3-7.0 and SSP1-2.6 conditions. All simulations performed new for this work were done by James Weber. 

Model data from the simulations used in the study which were performed initllay for CMIP6 can be freely accessed at https://esgf-node.llnl.gov and so are not inlcuded in this repository. 

The README explains the stash code and suite numbers.
DOI: 10.5281/zenodo.10401772
title: UKESM1 data supporting N2O Emission Mitigation Study

description: This repository contains models data from UKESM1 supporting the study exmaining the impact of reducing N2O emissions (via LBC adjustment) on stratospheric O3 for 2025-2075 under SSP3-7.0 and SSP1-2.6 conditions. All simulations performed new for this work were done by James Weber. 

Model data from the simulations used in the study which were performed initllay for CMIP6 can be freely accessed at https://esgf-node.llnl.gov and so are not inlcuded in this repository. 

The README explains the stash code and suite numbers.
DOI: 10.5281/zenodo.10470944
title: Dataset for article "Denitrification, anammox and DNRA in oligotrophic continental shelf sediments"

description: Datasets comprise of (1) measurements of sediments collected from New Zealand continental shelf, including average rate of total oxygen uptake (TOU) and diffusive oxygen uptake (DOU) by the sediment, fluxes across sediment-water interface of nitrogen oxides (NOx-), ammonium (NH4+), and total insolved nitrogen (DIN), total N2 production , denitrification, anammox, contribution of anamoox to total N2 production (ra), issimilatory nitrate reduced to ammonium (DNRA), N2 production depending on the sediment nitrification (p14n), and the contribution of anammox to total N2 production (ra); and (2) metadata of denitrification, oxygen penetration depth (OPD), and bottom water NOx- concentrations from literature.
DOI: 10.5281/zenodo.10470945
title: Dataset for article "Denitrification, anammox and DNRA in oligotrophic continental shelf sediments"

description: Datasets comprise of (1) measurements of sediments collected from New Zealand continental shelf, including average rate of total oxygen uptake (TOU) and diffusive oxygen uptake (DOU) by the sediment, fluxes across sediment-water interface of nitrogen oxides (NOx-), ammonium (NH4+), and total insolved nitrogen (DIN), total N2 production , denitrification, anammox, contribution of anamoox to total N2 production (ra), issimilatory nitrate reduced to ammonium (DNRA), N2 production depending on the sediment nitrification (p14n), and the contribution of anammox to total N2 production (ra); and (2) metadata of denitrification, oxygen penetration depth (OPD), and bottom water NOx- concentrations from literature.
DOI: 10.5281/zenodo.10477996
title: Electric charge structure

description: A mathematical model of electric charge is proposed as a solution to Maxwell's equations. Such a charge creates electrical tension in its vicinity by Coulomb's law. It is also shown that charges can be stored and carried by carriers (for example, electrons), but can be present and move independently. Electric current is a flow of positive charges that weakens as it moves. Thus, the charge is as immaterial as energy, which can have a carrier (as in mechanics) but can be transferred in a flow that does not have a carrier (as in electrodynamics).
DOI: 10.5281/zenodo.10477997
title: Electric charge structure

description: A mathematical model of electric charge is proposed as a solution to Maxwell's equations. Such a charge creates electrical tension in its vicinity by Coulomb's law. It is also shown that charges can be stored and carried by carriers (for example, electrons), but can be present and move independently. Electric current is a flow of positive charges that weakens as it moves. Thus, the charge is as immaterial as energy, which can have a carrier (as in mechanics) but can be transferred in a flow that does not have a carrier (as in electrodynamics).
DOI: 10.25345/c5vd6pg3p
title: MassIVE MSV000093802 - Diurnal rhythmicity of fecal microbiota and metabolite profiles in the first year of life: a randomized controlled interventional trial with infant formula
title: Microbiota assembly in the infant gut is influenced by time and duration of dietary exposure to breast-milk, infant formula and solid foods. In this randomized controlled intervention study, longitudinal sampling of infant stools (n=998) showed similar development of fecal bacterial communities between formula- and breast-fed infants during the first year of life (N=210). Infant formula supplemented with galacto-oligosaccharides (GOS) was most efficient to sustain high levels of bifidobacteria compared to formula containing B. longum and B. breve or placebo. Metabolite (untargeted) and bacterial profiling (16S rRNA/shallow metagenomics sequencing) revealed 24-hour oscillations and integrated data analysis identified circadian networks. Rhythmicity in bacterial diversity, specific taxa and functional pathways increased with age and was most pronounced following breast-feeding and GOS-supplementation. Circadian rhythms in dominant taxa were discovered ex-vivo in a chemostat model. Hence microbiota rhythmicity develops early in life, likely due to bacterial intrinsic clock mechanism and is affected by diet.