cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8032409
title: Additional file 4: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Table S2. Kinase isoforms detected by KING-REX assays. For each kinase, the number of selected assays and the number of isoforms detected by each assay are reported. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8032424.v1
title: Additional file 6: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Table S4. Additional information in support to Table 1, left panel (KING-REX vs. In-house transcriptome data). For each threshold and for each kinase in the KING-REX panel, the following information is reported: (i) the number of cell lines in which the kinase is considered present (P) or absent (N) in the reference dataset; (ii) the total number of true positives (TP), true negatives (TN), false positives (FP) and false negatives (FN); (iii) the recall, precision and F-measure metrics used to obtain data in Table 1, left panel (KING-REX vs. In-house transcriptome data. (XLSX 204 kb)
DOI: 10.6084/m9.figshare.8032409.v1
title: Additional file 4: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Table S2. Kinase isoforms detected by KING-REX assays. For each kinase, the number of selected assays and the number of isoforms detected by each assay are reported. (XLSX 71 kb)
DOI: 10.6084/m9.figshare.8032403
title: Additional file 3: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Table S1. KING-REX gene expression values of U-118 MG or KARPAS 299 unique kinases in serially diluted cell line RNA mixtures. List of kinases above a mean signal of 5 (Log2NC) in only one of the two tested cell lines (U-118 MG, left panel; or KARPAS 299, right panel) and below a mean signal of 1 (Log2NC) in the other one, with respective gene expression values measured in technical duplicates of RNA mixtures from the two cell lines (KARPAS 299 and U-118 MG) in different proportions (100–0%; 87.5%-12,5%; 75–25%; 50–50%; 25–75%; 12.5–87.5%; 0–100%). The blue shading reflects variations of gene expression values (Log2NC), ranging from 0 (white) to 14 (dark blue). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8032403.v1
title: Additional file 3: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Table S1. KING-REX gene expression values of U-118 MG or KARPAS 299 unique kinases in serially diluted cell line RNA mixtures. List of kinases above a mean signal of 5 (Log2NC) in only one of the two tested cell lines (U-118 MG, left panel; or KARPAS 299, right panel) and below a mean signal of 1 (Log2NC) in the other one, with respective gene expression values measured in technical duplicates of RNA mixtures from the two cell lines (KARPAS 299 and U-118 MG) in different proportions (100–0%; 87.5%-12,5%; 75–25%; 50–50%; 25–75%; 12.5–87.5%; 0–100%). The blue shading reflects variations of gene expression values (Log2NC), ranging from 0 (white) to 14 (dark blue). (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8032379
title: Additional file 11: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: KING-REX ASSAY IN and ASSAY OUT expression data. KING-REX Normalized counts (Log2transformed) for each ASSAY IN and ASSAY OUT for the 319 kinases in each analyzed sample, obtained using the pipeline for kinase fusion event detection described in M&M. (TXT 460 kb)
DOI: 10.6084/m9.figshare.8032376
title: Additional file 5: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S3. Gene RPKM values for individual samples withÂ p-values for strain-by-age effects. (XLSX 2403 kb)
DOI: 10.6084/m9.figshare.8032379.v1
title: Additional file 11: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: KING-REX ASSAY IN and ASSAY OUT expression data. KING-REX Normalized counts (Log2transformed) for each ASSAY IN and ASSAY OUT for the 319 kinases in each analyzed sample, obtained using the pipeline for kinase fusion event detection described in M&M. (TXT 460 kb)
DOI: 10.6084/m9.figshare.8032367
title: Additional file 4: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S2. Gene ontology (GO) analysis for biological process, component, and function, by rank significance. (XLSX 2404 kb)
DOI: 10.6084/m9.figshare.8032373
title: Additional file 10: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Transcriptome Gene expression data. Normalized counts (Log2transformed) of transcriptome analysis in each sample, obtained using the pipeline for gene expression analysis described in M&M. (TXT 3067 kb)
DOI: 10.6084/m9.figshare.8032364
title: Additional file 3: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S1. RPKM values for individualÂ samples, averages, and direction of expression change with age.Â P-values for differential expression in age, controlled for strain also provided. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.8032376.v1
title: Additional file 5: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S3. Gene RPKM values for individual samples withÂ p-values for strain-by-age effects. (XLSX 2403 kb)
DOI: 10.6084/m9.figshare.8032367.v1
title: Additional file 4: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S2. Gene ontology (GO) analysis for biological process, component, and function, by rank significance. (XLSX 2404 kb)
DOI: 10.6084/m9.figshare.8032373.v1
title: Additional file 10: of Comprehensive kinome NGS targeted expression profiling by KING-REX

description: Transcriptome Gene expression data. Normalized counts (Log2transformed) of transcriptome analysis in each sample, obtained using the pipeline for gene expression analysis described in M&M. (TXT 3067 kb)
DOI: 10.6084/m9.figshare.8032364.v1
title: Additional file 3: of Aging in the Drosophila ovary: contrasting changes in the expression of the piRNA machinery and mitochondria but no global release of transposable elements

description: Table S1. RPKM values for individualÂ samples, averages, and direction of expression change with age.Â P-values for differential expression in age, controlled for strain also provided. (XLSX 126 kb)
DOI: 10.6084/m9.figshare.8032322
title: Additional file 1: of Gene expression changes associated with the evolutionary loss of a metabolic trait: lack of lipogenesis in parasitoids

description: Table S1. Sample quality measurements, number of recovered reads per sample and mapping success. Table S2. Differentially expressed genes of D. melanogaster. Table S3. Differentially expressed genes of N. vitripennis. Table S4. Enriched GO-terms of the differentially expressed genes of D. melanogaster. Table S5. Enriched GO-terms of the differentially expressed genes of N. vitripennis. Table S6. Non-plastic genes sorted by residual differences in expression level. Table S7. KEGG-pathways associated with the differentially expressed genes per species. (XLS 6305 kb)
DOI: 10.18112/openneuro.ds002634.v2.0.0
title: Project_larynx
DOI: 10.6084/m9.figshare.8032322.v1
title: Additional file 1: of Gene expression changes associated with the evolutionary loss of a metabolic trait: lack of lipogenesis in parasitoids

description: Table S1. Sample quality measurements, number of recovered reads per sample and mapping success. Table S2. Differentially expressed genes of D. melanogaster. Table S3. Differentially expressed genes of N. vitripennis. Table S4. Enriched GO-terms of the differentially expressed genes of D. melanogaster. Table S5. Enriched GO-terms of the differentially expressed genes of N. vitripennis. Table S6. Non-plastic genes sorted by residual differences in expression level. Table S7. KEGG-pathways associated with the differentially expressed genes per species. (XLS 6305 kb)
DOI: 10.6084/m9.figshare.8032277
title: Additional file 5: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S4. Biological processes, KEGG pathways, and GAD disease enrichment of DAVID Gene Ontology analysis of HCAMSC eQTL target genes located in JUN plus TCF21 regulated open chromatin regions. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8032277.v1
title: Additional file 5: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S4. Biological processes, KEGG pathways, and GAD disease enrichment of DAVID Gene Ontology analysis of HCAMSC eQTL target genes located in JUN plus TCF21 regulated open chromatin regions. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.8032268
title: Additional file 4: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S3. Genes in or nearby the open chromatin regions where JUN and TCF21 are co-localized, genes assigned by GREAT. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8032268.v1
title: Additional file 4: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S3. Genes in or nearby the open chromatin regions where JUN and TCF21 are co-localized, genes assigned by GREAT. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.8032259
title: Additional file 3: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S2. GO analysis of genes in or nearby the open chromatin regions where JUN and TCF21 are co-localized. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8032259.v1
title: Additional file 3: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S2. GO analysis of genes in or nearby the open chromatin regions where JUN and TCF21 are co-localized. (XLSX 15 kb)
DOI: 10.6084/m9.figshare.8032250
title: Additional file 2: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S1. Biological processes and KEGG pathways from DAVID Gene Ontology analysis of JUN-TCF21 regulated H3K27ac genes. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8032250.v1
title: Additional file 2: of TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression

description: Table S1. Biological processes and KEGG pathways from DAVID Gene Ontology analysis of JUN-TCF21 regulated H3K27ac genes. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.8031803
title: transwell assay

description: transwell试验 of DPSC with miR-224-5p
DOI: 10.6084/m9.figshare.8031800
title: The sequence and de novo assembly of the wild yak genome

description: <i>In this study, we sequenced and de novo assembled its genome. A total of six different insert-size libraries were sequenced and generated 662 Gb of clean data in total. The assembled wild yak genome is 2.83 Gb in length, with an N50 contig size of 63.2 kb and a scaffold size of 16.3 Mb. BUSCO assessment indicated that 93.8% of the highly conserved mammal genes were completely present in the genome assembly. Annotation of the wild yak genome assembly identified 1.41 Gb (49.65%) of repetitive sequences and a total of 22,910 protein-coding genes, among these genes, 20,660 (90.18%) are annotated with functional terms.</i><br>
DOI: 10.6084/m9.figshare.8031695
title: Additional file 3: Raw Ct values derived from qPCR detection of AMH expression in small prehierarchic follicles of the Lueyang black-boned chickens and Nick layers

description: <b>Additional file 3</b>: Raw Ct values derived from qPCR detection of AMH expression in small prehierarchic follicles of the Lueyang black-boned chickens and Nick layers
DOI: 10.6084/m9.figshare.8031707
title: CCK8 result

description: Ťhe cck8 result of DPSC with miR-224-5p
DOI: 10.6084/m9.figshare.8031803.v1
title: transwell assay

description: transwell试验 of DPSC with miR-224-5p
DOI: 10.6084/m9.figshare.8031707.v1
title: CCK8 result

description: Ťhe cck8 result of DPSC with miR-224-5p
DOI: 10.6084/m9.figshare.8031689
title: mir-224targetGene.xlsx

description: Prediction of miR-224-5p target gene on miRTarBase.<br>
DOI: 10.6084/m9.figshare.8031692
title: Additional file 2: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER

description: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER
DOI: 10.6084/m9.figshare.8031695.v1
title: Additional file 3: Raw Ct values derived from qPCR detection of AMH expression in small prehierarchic follicles of the Lueyang black-boned chickens and Nick layers

description: <b>Additional file 3</b>: Raw Ct values derived from qPCR detection of AMH expression in small prehierarchic follicles of the Lueyang black-boned chickens and Nick layers
DOI: 10.6084/m9.figshare.8031800.v2
title: The sequence and de novo assembly of the wild yak genome

description: <i>In this study, we sequenced and de novo assembled its genome. A total of six different insert-size libraries were sequenced and generated 662 Gb of clean data in total. The assembled wild yak genome is 2.83 Gb in length, with an N50 contig size of 63.2 kb and a scaffold size of 16.3 Mb. BUSCO assessment indicated that 93.8% of the highly conserved mammal genes were completely present in the genome assembly. Annotation of the wild yak genome assembly identified 1.41 Gb (49.65%) of repetitive sequences and a total of 22,910 protein-coding genes, among these genes, 20,660 (90.18%) are annotated with functional terms.</i><br>
DOI: 10.6084/m9.figshare.8031686
title: DPSC,SCAP(224).xlsx

description: 定量RT-PCR results of DPSC and SCAP
DOI: 10.6084/m9.figshare.8031686.v1
title: DPSC,SCAP(224).xlsx

description: 定量RT-PCR results of DPSC and SCAP
DOI: 10.6084/m9.figshare.8031689.v1
title: mir-224targetGene.xlsx

description: Prediction of miR-224-5p target gene on miRTarBase.<br>
DOI: 10.6084/m9.figshare.8031800.v1
title: The sequence and de novo assembly of the wild yak genome

description: <i>In this study, we sequenced and de novo assembled its genome. A total of six different insert-size libraries were sequenced and generated 662 Gb of clean data in total. The assembled wild yak genome is 2.83 Gb in length, with an N50 contig size of 63.2 kb and a scaffold size of 16.3 Mb. BUSCO assessment indicated that 93.8% of the highly conserved mammal genes were completely present in the genome assembly. Annotation of the wild yak genome assembly identified 1.41 Gb (49.65%) of repetitive sequences and a total of 22,910 protein-coding genes, among these genes, 20,660 (90.18%) are annotated with functional terms.</i><br>
DOI: 10.6084/m9.figshare.8031683
title: Additional file 1 Raw data file for association test of Val566Ile and the number of eggs.xlsx

description: The data file included pedigree, genotypes of 362 offspring and 140 parents and the number of eggs produced by 362 offspring from the first egg to 31, 35 and 40 weeks old, and was presented as the format required by the QTDT program.<b></b>
DOI: 10.6084/m9.figshare.8031692.v2
title: Additional file 2: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER

description: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER
DOI: 10.6084/m9.figshare.8031680
title: Records of breeding in Wilson’s Plover Charadrius wilsonia with new localities for Brazil

description: Abstract Wilson’s Plover, Charadrius wilsonia, is widely distributed in coastal areas of the Americas. This report presents the first record of breeding in this species on Coroa do Avião Island, on the coast of Pernambuco, and in the estuary of the Cardoso and Camurupim rivers, on the coast of Piauí, in northeastern Brazil, extending the known area of reproduction of this species in this region. One breeding pair was observed on October 29th 2014 on Coroa do Avião Island, and a second pair was recorded on April 6th 2016 in the Cardoso/Camurupim estuary on the Piauí coast. Both the male and the female contributed to the incubation of the eggs. The nest on Coroa do Avião island was camouflaged by the local vegetation, but despite this, the eggs were attacked by a predator. Possible predators observed on the island included Caracara plancus and domestic cats and dogs.
DOI: 10.6084/m9.figshare.8031692.v1
title: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER

description: PDB files for Val566 and Ile566 AMH 3D structures modeled by MODELLER
DOI: 10.6084/m9.figshare.8031674
title: First record of Bulimulus tenuissimus (Mollusca) as potential experimental intermediate host of Angiostrongylus cantonensis (Nematoda)

description: Abstract Snails are essential to complete the life cycle of the metastrongylid nematode Angiostrongylus cantonensis, the causative agent of infections in domestic and wild animals, mainly rodents, and also of neural angiostrongyliasis or eosinophilic meningitis in humans. There are many reports of mollusks that can act as intermediate hosts of this parasite, especially freshwater snails and the African giant Achatina fulica. The terrestrial gastropod Bulimulus tenuissimus is widely distributed in Brazil and other species of the same genus occur in Brazil and other countries, overlapping regions in which there are reports of the occurrence of A. cantonensis and angiostrongyliasis. In spite of this, there are no records in the literature of this species performing the role of intermediate host to A. cantonensis. The present study analyzed the experimental infection with first-stage larvae of A. cantonensis, under laboratory conditions, of B. tenuissimus, by using histology and electron microscopy techniques. Three weeks after exposure to L1 larvae, it was possible to recover L3 larvae in small numbers from the infected snails. Developing larvae were observed in the cephalopedal mass (foot), ovotestis, and mantle tissues, being located inside a granulomatous structure composed of hemocyte infiltration, but there was no calcium or collagen deposition in these structures in significant amounts. In the third week post exposure, it was possible observe a sheath around the developing larvae. The infected snails presented reduction in the fibrous muscular tissue in the foot region, loss of the acinar organization in the digestive gland, with increase of amorphous material inside the acini and loss of epithelial pattern of nuclear organization in the acinar cells. However, the ovotestis seemed unaffected by the infection, since there was a large number of developing oocytes and spermatozoa in different stages of formation. The digestion of infected snails allows us the third-stage recovery rate of 17.25%, at 14 days post exposure to the L1. These L3 recovered from B. tenuissimus were used to infect rats experimentally, and 43 days post infection first-stage (L1) larvae of A. cantonensis were recovered from fresh feces. The results presented constituted the first report of the role of B. tenuissimus as an experimental intermediate host to A. cantonensis and shed some light on a possible problem, since the overlapping distribution of B. tenuissimus and A. cantonensis in Brazil and other countries where different species of Bulimulus occur enables the establishment and maintenance of the life cycle of this parasite in nature, with wild rodents as reservoirs, acting as a source of infection to humans, causing neural angiostrongyliasis.
DOI: 10.6084/m9.figshare.8031680.v1
title: Records of breeding in Wilson’s Plover Charadrius wilsonia with new localities for Brazil

description: Abstract Wilson’s Plover, Charadrius wilsonia, is widely distributed in coastal areas of the Americas. This report presents the first record of breeding in this species on Coroa do Avião Island, on the coast of Pernambuco, and in the estuary of the Cardoso and Camurupim rivers, on the coast of Piauí, in northeastern Brazil, extending the known area of reproduction of this species in this region. One breeding pair was observed on October 29th 2014 on Coroa do Avião Island, and a second pair was recorded on April 6th 2016 in the Cardoso/Camurupim estuary on the Piauí coast. Both the male and the female contributed to the incubation of the eggs. The nest on Coroa do Avião island was camouflaged by the local vegetation, but despite this, the eggs were attacked by a predator. Possible predators observed on the island included Caracara plancus and domestic cats and dogs.
DOI: 10.6084/m9.figshare.8031665
title: Effect of chewing gum on thirst: an integrative review

description: ABSTRACT Objective: To identify and analyze the evidence on the effect of chewing gum on thirst in adults. Method: Integrative review, guided by the question: “What is the scientific evidence about the effects of chewing gum on adult’s thirst?” LILACS, PubMed, Scopus and Web of Science were the databases consulted. Results: Of a total of 2,414 articles found, 12 papers were selected whose publications varied between 1991 and 2016. The use of chewing gum resulted in increased salivary volume (five studies), xerostomia relief (seven studies), and thirst reduction (four studies). It was not possible to establish the number of chewing gums per day, being frequent the recommendation to use as desired. There was a predominance of studies with patients under dialysis and with cancer. Conclusion: Chewing gum is an effective strategy to reduce thirst discomfort in adults.
DOI: 10.6084/m9.figshare.8031668
title: Benign ovarian lesions with restricted diffusion

description: Abstract Developments in magnetic resonance imaging have expanded its role in the assessment of the female pelvis, including the diagnosis of ovarian lesions. In this setting, diffusion-weighted imaging has proven its diagnostic value, which is particularly important in differentiating between benign and malignant ovarian tumors. In general, the latter show restricted diffusion, whereas the former do not. Exceptions include teratomas, endometriomas, hemorrhagic cysts, ovarian abscesses, ovarian infarction, and some benign stromal tumors. The aim of this review is to draw attention to benign ovarian lesions with restricted diffusion, with a special focus on diffusion-weighted imaging pearls and pitfalls.
DOI: 10.6084/m9.figshare.8031671
title: Physiological characterization of plant growth in sweet potato

description: ABSTRACT This research was installed to study plant growth of sweet potato and identify the most favorable harvest time for both roots and the aboveground part (stems). The experiment was carried out at the JK campus of the Federal University of the Vale do Jequitinhonha e Mucuri, in Diamantina, MG, complete blocks at random, with four replications. Three plants in the central part of the experimental plots were collected in twelve consecutive harvests at 15-day intervals. Plants were fractionated in roots, stems, and leaves to determine the dry matter of each part. Leaf area was also measured and growth rates were calculated. Data were analyzed by means of regression. Plants reached the highest dry matter accumulation between 75 and 156 days after transplanting (DAT), which corresponded to the phase of greatest growth. Plants should be harvested between 60 and 87 DAT to achieve the highest stem yield. For the highest root yield, the harvest should be carried out 180 DAT. The period from 80 to 118 DAT was the most adequate for reaching simultaneously the highest yields for both roots and stems. Therefore, the ideal harvest time for sweet potatoes depends on the use intended for the plant and on the physiological indexes associated with it.