cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16757408
title: Faraday rotation and phase modulation data obtained from radio occultations in 2016 using Akatsuki spacecraft

description: This repository contains the radio occultation data used in a paper, "Faraday rotation analysis of Akatsuki spacecraft radio waves crossing the Middle Corona: Magnetic field fluctuations and passage of a CME."



If you present any results using this dataset at conferences or in publications, please make sure to contact the data creator (chiba.shota.e1 at f.mail.nagoya-u.ac.jp) in advance. There are some potential points of note for analysis.
DOI: 10.22002/bkz1m-qm002
title: Agro VirB8-GFP

description: Agrobacterium cells Vir B8-GFP were induced for T pili in liquid and grown for 24h.
description: <strong>Tilt Series Date:</strong> 2013-05-08</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Pat Zambryski</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-08-12/rawdata/</p>VirB80012.mrc,  Tilt Series (Pixel Size 0.42 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-08-12/rawdata/VirB80012.mrc"
        > <i class="download icon"></i> Download </a></p>

        VirB80012_full.rec,  Reconstruction (Pixel Size 1.68 nm), 430.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-05-08-12/3dimage_26648/VirB80012_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ep2th-5zd63
title: Parachlamydia acanthamoebae

description: Intact cells purified from amoeba cultures
description: <strong>Tilt Series Date:</strong> 2012-03-23</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Parachlamydia acanthamoebae</p>
<strong>Strain:</strong> UV-7</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Matthias Horn</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Purified</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-23-47/rawdata/</p>03232012_C20_6.mrc,  Tilt Series (Pixel Size 0.63 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-23-47/rawdata/03232012_C20_6.mrc"
        > <i class="download icon"></i> Download </a></p>

        03232012_C20_6_full.rec,  Reconstruction (Pixel Size 1.25 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-23-47/3dimage_31736/03232012_C20_6_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tyyn3-hq942
title: Protochlamydia amoebophila Cryosections

description: Cryosections of infected amoeba cells
description: <strong>Tilt Series Date:</strong> 2012-03-30</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Protochlamydia amoebophila</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Matthias Horn</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cryosections</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-41/rawdata/</p>10012012_CS_S6_x.st,  Tilt Series (Pixel Size 0.99 nm), 621.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-41/rawdata/10012012_CS_S6_x.st"
        > <i class="download icon"></i> Download </a></p>

        10012012_CS_S6_x.rec,  Reconstruction (Pixel Size 0.99 nm), 1.8 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2012-03-30-41/3dimage_31787/10012012_CS_S6_x.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/y2jtw-2kq19
title: E.coli   "strain 2619" EEEE

description: E.coli   "strain 2619" EEEE tsr receptor methylation site mutant EEEE CheA off state (CCWA)
description: <strong>Tilt Series Date:</strong> 2012-04-02</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium at 30 degrees, 1 hour lysed with Penicillin</p>
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-28/rawdata/</p>UU2619_marchb0002.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-28/rawdata/UU2619_marchb0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        UU2619_marchb0002_full.rec,  Reconstruction (Pixel Size 1.288 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-28/3dimage_18104/UU2619_marchb0002_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/5v7k8-02440
title: AZ21

description: Caulobacter crescentus CB15N with inframe deletion of all three lytic transglycosylases
description: <strong>Tilt Series Date:</strong> 2013-09-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -12.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Martin Thanbichler</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in PYE</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-28/rawdata/</p>CaulobacterAZ21atlas2new0004.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-28/rawdata/CaulobacterAZ21atlas2new0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        CaulobacterAZ21atlas2new0004_part121_8.rec,  Reconstruction (Pixel Size 0.96 nm), 2.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-17-28/3dimage_31272/CaulobacterAZ21atlas2new0004_part121_8.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/0h3df-jsa65
title: B. subtilis 3267 Alp7A

description: ponA mutant, static Alp7A
description: <strong>Tilt Series Date:</strong> 2014-07-10</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Bacillus subtilis </p>
<strong>Strain:</strong> AD3267, ponA null, Alp7A-GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Joe Pogliano</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-10-14/rawdata/</p>Bacillus_32670014.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-10-14/rawdata/Bacillus_32670014.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bacillus_32670014_part121_54.rec,  Reconstruction (Pixel Size 0.0 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-07-10-14/3dimage_49340/Bacillus_32670014_part121_54.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.2ckq4h
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viola tricolor",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044892-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/kgmgv-8sq61
title: B. subtilis minicell lysate

description: B subtilis strain DK 720 minicell lysate
description: <strong>Tilt Series Date:</strong> 2013-09-05</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Bacillus subtilis</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dan Kearns</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Minicell isolation and Lysozyme lysis</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-15/rawdata/</p>Bacilluslysemini0017.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-15/rawdata/Bacilluslysemini0017.mrc"
        > <i class="download icon"></i> Download </a></p>

        Bacilluslysemini0017_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-09-05-15/3dimage_30429/Bacilluslysemini0017_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.dfug2x
title: Occurrence Download

description: A dataset containing 635 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Alcippe poioicephala",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 635 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044893-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/x5y1k-8cf31
title: R. sphaeroides Cryosections

description: Strain JPA 543 cryosections
description: <strong>Tilt Series Date:</strong> 2013-07-26</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Rhodobacter sphaeroides</p>
<strong>Strain:</strong> ATCC 17023</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
<strong>Collaborators and Roles:</strong> Mark Ladinsky, Judy Armitage</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-62/rawdata/</p>rhodobactertestb0025.mrc,  Tilt Series (Pixel Size 0.26 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-62/rawdata/rhodobactertestb0025.mrc"
        > <i class="download icon"></i> Download </a></p>

        rhodobactertestb0025SIRTrot.rec,  Reconstruction (Pixel Size 0.0 nm), 11.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2013-07-26-62/3dimage_46377/rhodobactertestb0025SIRTrot.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ag8sy-v7448
title: E.coli   "strain 2619" EEEE

description: E.coli   "strain 2619" EEEE tsr receptor methylation site mutant EEEE CheA off state (CCWA)
description: <strong>Tilt Series Date:</strong> 2012-04-02</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> John S. Parkinson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> grown in TB medium at 30 degrees, 1 hour lysed with Penicillin</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-4/rawdata/</p>UU2619_manual3.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-4/rawdata/UU2619_manual3.mrc"
        > <i class="download icon"></i> Download </a></p>

        UU2619_manual3_full.rec,  Reconstruction (Pixel Size 1.288 nm), 516.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2012-04-02-4/3dimage_18053/UU2619_manual3_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/t8963-9xb71
title: dK203 uninduced grown 2 days

description: dK203 is the dQ167 strain in which dK has also been deactivated. It is only inducible for dQ.
description: <strong>Tilt Series Date:</strong> 2014-12-21</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Arash Komeili</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-25/rawdata/</p>dkuninduced_atlas6_montage20006.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-25/rawdata/dkuninduced_atlas6_montage20006.mrc"
        > <i class="download icon"></i> Download </a></p>

        dkuninduced_atlas6_montage20006_full.rec,  Reconstruction (Pixel Size 2.4 nm), 623.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-21-25/3dimage_49909/dkuninduced_atlas6_montage20006_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/chqv9-q8e39
title: dQ167_14h_induced

description: This is the strain in which dQ has been deactivated and an inducible plasmid is present for dQ
description: <strong>Tilt Series Date:</strong> 2014-12-30</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum </p>
<strong>Strain:</strong> deltaQ 167</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 100.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Arash Komieli</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-5/rawdata/</p>dQ167_14hinduced_atlas120001.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-5/rawdata/dQ167_14hinduced_atlas120001.mrc"
        > <i class="download icon"></i> Download </a></p>

        dQ167_14hinduced_atlas120001.rec,  Reconstruction (Pixel Size 2.4 nm), 1.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2014-12-30-5/3dimage_49995/dQ167_14hinduced_atlas120001.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.ekygep
title: Occurrence Download

description: A dataset containing 279 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viola tricolor",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 279 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044890-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bnhewg
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Viola tricolor",
 "Country is Japan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 82 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044891-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/ctcfq-8gb76
title: Clostridium thermocellum

description: cellulosome
description: <strong>Tilt Series Date:</strong> 2013-07-29</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Clostridium thermocellum</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Eric Matson</p>
<strong>Purification / Growth Conditions / Treatment:</strong> growth on cellulobiose, anaerobic</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-29-10/3dimage_29407/</p>cthermo0010_full.rec,  Reconstruction (Pixel Size 2.4 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-29-10/3dimage_29407/cthermo0010_full.rec"
        > <i class="download icon"></i> Download </a></p>

        cthermo0010.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-07-29-10/rawdata/cthermo0010.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/k81ct-dt793
title: arpc3(-/-)

description: Raw data files of arpc3(-/-)
description: <strong>Tilt Series Date:</strong> 2013-08-23</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> MEF cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -14.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Dorit Hanein, Sanford Burnham Medical Research Inst. provided plunge-freeze sample grids</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2013-08-23-8/rawdata/</p>atlas10006.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.7 GB  
        
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        atlas10006_full.rec,  Reconstruction (Pixel Size 2.4 nm), 267.3 MB  
        
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DOI: 10.5281/zenodo.15349100
title: Large vision model supported tracking of high-density particles based on optical flow learning

description: This is the official dataset of high-density particle tracking using a video flow-informed neural network (VFINN) that estimates dense optical flow without requiring ground-truth data. VFINN fine-tunes a large visual neural network with a flow-informed loss function, achieving sub-pixel average endpoint error. This dataset provides formatted single-particle tracking .tif image pairs with localization points, ready for direct use in training.