cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5p26qg6j
title: MassIVE Reanalysis RMSV000000698.39 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of CCMS/MassIVE living data reanalysis of MSV000086944, MSGF+ reanalysis [BioReplicate: HeLaS3_LysC_HCD] [launched by 429d0006961645ef961620a96ee0f782]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.15468/dl.6mvpy8
title: Occurrence Download

description: A dataset containing 681 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucryphia cordifolia Cav.",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 681 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049878-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7s6s6c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula repanda (Hiern) Spalik & S.R.Downie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049879-250525065834625/datasets/export for details.
DOI: 10.15468/dl.5uy2pq
title: Occurrence Download

description: A dataset containing 1058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Luma apiculata (DC.) Burret",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 1058 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049880-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mf6jaq
title: Occurrence Download

description: A dataset containing 1363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (Moscow University Herbarium (MW), Records of vascular plants, bryophytes and lichens from Ukrainian Grassland Database, Local floras of Russia: records from literature, MHA Herbarium: collections of vascular plants, Records of vascular plants, bryophytes and lichens in the core of the Askania-Nova Biosphere Reserve F.E. Falz-Fein and depressions lands based on relevés in 1967-2019, Flora of kurgans in the \"Wild Fields\" (Ukraine), Weed plants of the European part of Russia, Locations of plants on dot distribution maps in the Flora of Siberia (Flora Sibiraea, 1987–1997), Naturalis Biodiversity Center (NL) - Botany, iNaturalist Research-grade Observations)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polygonum patulum M.Bieb."
 ]
}

 The dataset includes 1363 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049881-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.adec8p
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Bolivia (Plurinational State of)",
 "Geometry POLYGON((-65.14562 -21.66918,-65.14744 -21.84921,-65.00639 -21.84921,-65.00275 -21.67003,-65.14562 -21.66918))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is VU",
 "OccurrenceStatus is Present",
 "TaxonKey is Phoenicoparrus andinus (Philippi, 1854)",
 {
 "or" : [
 "Year 2000-2025",
 "Year 2000-2025"
 ]
 }
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049884-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zwyr3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula repanda (Hiern) Spalik & S.R.Downie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049883-250525065834625/datasets/export for details.
DOI: 10.15468/dl.crng2w
title: Occurrence Download

description: A dataset containing 2799 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sargassum horneri (Turner) C.Agardh, 1820"
 ]
}

 The dataset includes 2799 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049882-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7wn6sq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula repanda (Hiern) Spalik & S.R.Downie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049885-250525065834625/datasets/export for details.
DOI: 10.15468/dl.svjgmu
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrceugenia schulzei Johow",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 46 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049886-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25345/c5j960p19
title: MassIVE Reanalysis RMSV000000698.41 - CCMS MassIVE Knowledge Base (MassIVE-KB) MS-GF+ reanalysis of CCMS/MassIVE living data reanalysis of MSV000086944, MSGF+ reanalysis [BioReplicate: hES1_trypsin_HCD] [launched by 429d0006961645ef961620a96ee0f782]
title: Center for Computational Mass Spectrometry (CCMS) systematic reanalysis of public proteomics mass spectrometry (MS) datasets provides a public, large-scale and comparable set of dataset reanalyses results including detailed provenance records. To further facilitate the broad reusability of public proteomics MS data, these reanalyses were also used to build the MassIVE Knowledge Base (MassIVE-KB) spectral library, a community-wide resource derived from hundreds of millions of identified spectra from tens of terabytes of mass spectrometry data.
DOI: 10.15468/dl.avhhy2
title: Occurrence Download

description: A dataset containing 132302 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation, Occurrence evidence)",
 "TaxonKey is Plutella xylostella (Linnaeus, 1767)"
 ]
}

 The dataset includes 132302 records from 348 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049871-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fxkgm6
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((21.56750 -18.08988,147.43250 -18.08988,147.43250 70.08988,21.56750 70.08988,21.56750 -18.08988))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sargassum polyporum Mont., 1842"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049887-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.je4zb9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula repanda (Hiern) Spalik & S.R.Downie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049889-250525065834625/datasets/export for details.
DOI: 10.15468/dl.gtnzak
title: Occurrence Download

description: A dataset containing 174 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Myrceugenia planipes (Hook. & Arn.) O.Berg",
 "Country is Chile",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 174 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049890-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/c4f4dskmdm
title: 15 High-Performance Democracies with documented accounts of Racism per Country

description: This dataset offers documentary evidence of racism for 15 countries (top performing democracies in the 2022-23 period). This is done to demonstrate the prevalence of racism as a chronic problem for, and with recent presentations in, the world’s high performing democracies. Accounts of racism are divided into the following categories of document types: (1) Academic research, (2) Government body reports, (3) Non-government body reports, (4) journalistic reports, and (5) non-academic polling/opinion surveys, to ensure a diversity of evidentiary claims per county. 

Up to 10 accounts have been provided for each category, as this was the upward limit of our Research Assistance funding. In no case is this an exhaustive listing even though, for some categories (such as government reports from Costa Rica) we did not reach 10 accounts. Further research with new funding is required to build on this work. 

The data is provided alphabetically per country in tables.

Attribution: Jean-Paul Gagnon, Seema Shah, and Blake Kelly. 2025. "15 High-Performance Democracies with documented accounts of Racism per Country". V1. [DOI or hyperlink to Mendeley page] 

Associated publication: Jean-Paul Gagnon, Seema Shah, Blake Kelly. 2025. "Racism Undermines High Performance Democracies". Chinese Political Science Review. Forthcoming. Abstract below.

Racism Undermines High-Performance Democracies

Abstract. Racism is a chronic problem for fifteen of the world’s top scoring democracies (Denmark serves as a case study). This evidence – which we draw from academic research, government and non-government body reports, journalistic reports, and polling data published between 2013 and 2023 – troubles doctrines of representative, liberal, electoral, and participatory theories of democracy. In this article, we apply an aspect of Graefrath and Jahn’s ontological coherence rule – this being a comparison of the ontic commitments required by each theory against ontic commitments of racism as defined by the Australian Human Rights Commission – to conceptually demonstrate this claim. This leads us to the conclusion that real-existing democracies experiencing racism are also likely experiencing a constraint on their democratic capacities. Racism, in short, undermines at least four types of democracy. We end our analysis with a suggestion to adapt International IDEA’s 2024 PODS methodology so that it may capture and contrast the opinions of racialized minorities, alongside the opinions of experts, the statistically average person, and other marginalized persons, as the next step in this line of research. 

Keywords. Democracy, Racism, Liberalism, Elections, Representation, Participation.
DOI: 10.17632/c4f4dskmdm.1
title: 15 High-Performance Democracies with documented accounts of Racism per Country

description: This dataset offers documentary evidence of racism for 15 countries (top performing democracies in the 2022-23 period). This is done to demonstrate the prevalence of racism as a chronic problem for, and with recent presentations in, the world’s high performing democracies. Accounts of racism are divided into the following categories of document types: (1) Academic research, (2) Government body reports, (3) Non-government body reports, (4) journalistic reports, and (5) non-academic polling/opinion surveys, to ensure a diversity of evidentiary claims per county. 

Up to 10 accounts have been provided for each category, as this was the upward limit of our Research Assistance funding. In no case is this an exhaustive listing even though, for some categories (such as government reports from Costa Rica) we did not reach 10 accounts. Further research with new funding is required to build on this work. 

The data is provided alphabetically per country in tables.

Attribution: Jean-Paul Gagnon, Seema Shah, and Blake Kelly. 2025. "15 High-Performance Democracies with documented accounts of Racism per Country". V1. [DOI or hyperlink to Mendeley page] 

Associated publication: Jean-Paul Gagnon, Seema Shah, Blake Kelly. 2025. "Racism Undermines High Performance Democracies". Chinese Political Science Review. Forthcoming. Abstract below.

Racism Undermines High-Performance Democracies

Abstract. Racism is a chronic problem for fifteen of the world’s top scoring democracies (Denmark serves as a case study). This evidence – which we draw from academic research, government and non-government body reports, journalistic reports, and polling data published between 2013 and 2023 – troubles doctrines of representative, liberal, electoral, and participatory theories of democracy. In this article, we apply an aspect of Graefrath and Jahn’s ontological coherence rule – this being a comparison of the ontic commitments required by each theory against ontic commitments of racism as defined by the Australian Human Rights Commission – to conceptually demonstrate this claim. This leads us to the conclusion that real-existing democracies experiencing racism are also likely experiencing a constraint on their democratic capacities. Racism, in short, undermines at least four types of democracy. We end our analysis with a suggestion to adapt International IDEA’s 2024 PODS methodology so that it may capture and contrast the opinions of racialized minorities, alongside the opinions of experts, the statistically average person, and other marginalized persons, as the next step in this line of research. 

Keywords. Democracy, Racism, Liberalism, Elections, Representation, Participation.
DOI: 10.17632/zcm8yt5cgx
title: Fluctuating salinity during development impacts fish life histories

description: To test the effect of developmental environment and age, we ran models with environment (freshwater, stable-saline, fluctuating-saline), age (young, old) and their interaction as fixed factors. Age was excluded if a trait was only measured at one age. If there was a significant interaction, we examined the environmental effect separately at each age. If the interaction was non-significant, it was removed from the model to estimate the main effects. Given a significant environment effect, we ran post-hoc Tukey’s tests to test for pairwise differences. Each trait in each sex was analysed separately. Brood ID (for all models) and individual ID (for male reproductive traits) were included as separate random factors.

We first ran linear mixed models (LMMs) and checked whether the model residuals fulfilled the model assumptions. If not, we either log-transformed the data or ran generalized linear mixed models (GLMMs) with an appropriate error distribution. We included the same variables in zero-inflated models as those in main models. We ran overdispersion tests (DHARMa package) to ensure that the variance was not greater than the mean for GLMMs. 

For immunity, we included standardised body length as a covariate. For log-transformed gut length, we accounted for its allometric relationship with body size by log-transforming body length and including it as a covariate (standardised). For relative telomere length, we ran an additional LMM including age since birth (standardised) as a covariate to test how chronological age affect telomere shortening.

Growth

We ran separate LMMs for growth in juveniles, adult females and adult males. We considered body length as the response variable, and treated environment as a fixed factor, and age (in weeks) as a fixed covariate. We treated brood ID (for both juveniles and adults) and individual ID (for adults) as random factors to control for repeated measures from the same family and/or fish. We included the environment-by-age interaction, and age^2 to account for non-linear growth. If the interaction was significant, we ran individual LMMs (and Tukey’s tests) at each age to determine when body size diverged between environments. 

Mortality

Adult mortality was evaluated separately for each sex using Cox regression models (coxme package) with environment as the fixed factor and brood ID as a random factor. Surviving fish were treated as right-censored data.

Sex differences

We calculated the standardised mean difference (effect size = Cohen’s d) for the effect of salinity (stable-saline relative to freshwater) and the effect of fluctuations (fluctuating relative to stable-saline) for traits in both sexes. We further tested the difference in effect sizes between females and males using Welch’s t-test (α = 0.05, two-tailed) to assess sex-specific responses.
DOI: 10.17632/zcm8yt5cgx.1
title: Fluctuating salinity during development impacts fish life histories

description: To test the effect of developmental environment and age, we ran models with environment (freshwater, stable-saline, fluctuating-saline), age (young, old) and their interaction as fixed factors. Age was excluded if a trait was only measured at one age. If there was a significant interaction, we examined the environmental effect separately at each age. If the interaction was non-significant, it was removed from the model to estimate the main effects. Given a significant environment effect, we ran post-hoc Tukey’s tests to test for pairwise differences. Each trait in each sex was analysed separately. Brood ID (for all models) and individual ID (for male reproductive traits) were included as separate random factors.

We first ran linear mixed models (LMMs) and checked whether the model residuals fulfilled the model assumptions. If not, we either log-transformed the data or ran generalized linear mixed models (GLMMs) with an appropriate error distribution. We included the same variables in zero-inflated models as those in main models. We ran overdispersion tests (DHARMa package) to ensure that the variance was not greater than the mean for GLMMs. 

For immunity, we included standardised body length as a covariate. For log-transformed gut length, we accounted for its allometric relationship with body size by log-transforming body length and including it as a covariate (standardised). For relative telomere length, we ran an additional LMM including age since birth (standardised) as a covariate to test how chronological age affect telomere shortening.

Growth

We ran separate LMMs for growth in juveniles, adult females and adult males. We considered body length as the response variable, and treated environment as a fixed factor, and age (in weeks) as a fixed covariate. We treated brood ID (for both juveniles and adults) and individual ID (for adults) as random factors to control for repeated measures from the same family and/or fish. We included the environment-by-age interaction, and age^2 to account for non-linear growth. If the interaction was significant, we ran individual LMMs (and Tukey’s tests) at each age to determine when body size diverged between environments. 

Mortality

Adult mortality was evaluated separately for each sex using Cox regression models (coxme package) with environment as the fixed factor and brood ID as a random factor. Surviving fish were treated as right-censored data.

Sex differences

We calculated the standardised mean difference (effect size = Cohen’s d) for the effect of salinity (stable-saline relative to freshwater) and the effect of fluctuations (fluctuating relative to stable-saline) for traits in both sexes. We further tested the difference in effect sizes between females and males using Welch’s t-test (α = 0.05, two-tailed) to assess sex-specific responses.
DOI: 10.15468/dl.y29ykx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Berula repanda (Hiern) Spalik & S.R.Downie",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049891-250525065834625/datasets/export for details.