cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.680885.v1
title: Human B-cell transcriptional regulatory network

description: The human B-cell regulatory network was reverse engineered by the ARACNe algorithm (PMID 16723010) from 254 samples including normal (naive and greminal center B-cells), several tumor phnotypes (B-cell lymphomas) and cell lines. Gene expression was profiled on Affymetrix H-GU95Av2 arrays, processed by the cleaner algorithm (PMID 20042104), and normalized with MAS5 (affy package from Bioconductor). The regulatory network ('regul', 633 transcription factors regulating 6,403 target genes through 173,539 interactions) and the expression dataset used to assemble it ('dset', 254 samples x 6,403 probe-sets) are included as an R-system binary file.
DOI: 10.17632/sr63djgz8b
title: Financial Development, Globalization and Foreign Direct Investment Nexus: An Empirical Studies from Africa.

description: The paper examined how globalization influences the relationship between financial development and foreign direct investment (FDI) in Africa. In order to provide meaningful policy implications, the study divided financial development into two dimensions: the financial institution index (FII) and the financial markets index (FMI). Likewise, globalization was disaggregated into its political, social, and economic aspects. 

By employing a two-stage least squares approach, the study discovered that both financial development and globalization exerted a positive influence on FDI in Africa. However, when examining financial development in more detail, it was observed that only the FMI directly impacted FDI inflows, whereas the FII did not exhibit a significant effect. Regarding the various components of globalization, political globalization exhibited a synergistic relationship with the financial development index, while social globalization emerged as the most attractive component, drawing in more FDI compared to other dimensions.

The dependent variable, FDI, was measured using FDI inflows as a percentage of GDP, obtained from the World Development Indicators (WDI). The main variables of interest are financial development and globalization. Financial development was quantified using the financial development index (MFD) developed by Svirydzenka (2016), which can be obtained from the International Monetary Fund (IMF). Globalization was measured using the globalization index, which is calculated as a weighted average of economic globalization (36%), social globalization (38%), and political globalization (26%). This comprehensive metric provides more meaningful insights compared to alternative indicators, such as the proportion of imports or exports to GDP or trade openness. The globalization index used in this study was sourced from the Konjunkturforschungsstelle (KOF).

In our analysis, we have included six (6) control variables base on various demographic factors specific to Africa, as well as factors supported by existing literature. These control variables encompass a range of dimensions. Trade openness is considered, measured as net trade (% GDP). Also, economic growth is taken into account, represented by GDP growth. Domestic capital is included, measured by gross capital formation (%GDP).  infrastructure is considered,  (number of mobile subscribers per 100 people(. Inflation is also taken into account, measured by the annual consumer price inflation (%). Institutional quality is considered, which is an average of six institutional quality variables: corruption control, voice and accountability, rule of law, political stability and absence of violence, government effectiveness, and regulatory quality. These control variables were chosen based on their relevance and availability of data.
DOI: 10.6084/m9.figshare.14464764.v1
title: GBR and Torres Straight Benthic Type Reference Sample

description: This benthic reference data is intended for use as a calibration and/or validation data for global scale remote sensing image based classification of coral reef areas. The data is in a vector shapefile format consisting of polygons labelled with one of seven coral reef benthic classes that include Microalgal Mats, Coral/Algae, Rubble, Rock, Seagrass Dense, Seagrass Sparse, Sand. <b>Please cite data as:</b> Lyons, M., Kovacs, E., Borrego-Acevedo, R., Canto, R., Harris, D., Kennedy, E., Markey, K., Murray, N., Ordonez Alvarez, A., Phinn, S., Roe, M., Roelfsema, C., Say, C., Tudman, P., C., Wolff, J., Yuwono, D., Bambric, B., Fox, H., Lieb, Z., Asner , G., Knapp , D., Li, J., Harris, B., Larsen, K. & Rice, K. 2021. GBR and Torres Straight Benthic Type Reference Sample. University of Queensland. DOI: https://doi.org/10.6084/m9.figshare.14464764 <b>Links to supplementary information:</b> Mapping methods overview (https://allencoralatlas.org/methods/) UQ mapping team web site (https://www.rsrc.org.au/globalreef) Detailed mapping methods description by Lyons et al. (https://doi.org/10.1002/rse2.157) Detailed classification scheme description by Kennedy et al. (https://doi.org/10.1038/s41597-021-00958-z) Detailed reference creation description workflow by Roelfsema et al. (https://doi.org/10.3389/fmars.2021.643381) <b>Funding:</b> Vulcan Inc., (https://vulcan.com) Great Barrier Reef Foundation (https://www.barrierreef.org/)The Great Barrier Reef Marine Park Authority (https://www.gbrmpa.gov.au/) <b>Acknowledgement:</b> This work was initiated and funded primarily through Paul Allen Philanthropies and Vulcan Inc. as part of the Allen Coral Atlas. We acknowledge the late Paul Allen and Ruth Gates for their fundamental vision and drive to enable us to work together on this critical reef mapping problem. Project partners providing financial, service and personnel include: Planet Inc., National Geographic, University of Queensland, Arizona State University, and University of Hawai'i. Significant support has also been provided by Google Inc., Great Barrier Reef Foundation, and Trimble (Ecognition). Contributors to establishing and running the project include: Vulcan Inc. [James Deutsch, Lauren Kickam, Paulina Gerstner, Charlie Whiton, Kirk Larsen, Sarah Frias Torres, Kyle Rice, Eldan Goldenberg, Janet Greenlee]; Planet Inc. [Andrew Zolli, Trevor McDonald, Joe Mascaro, Joe Kington]; University of Queensland [Chris Roelfsema, Stuart Phinn, Emma Kennedy, Mitch Lyons, Nicholas Murray, Doddy Yuwono, Dan Harris, Eva Kovacs, Rodney Borrego, Meredith Roe, Jeremy Wolff, Kathryn Markey, Alexandra Ordonez, Chantal Say, Paul Tudman]; Arizona State University [Greg Asner, Dave Knapp, Jiwei Li, Yaping Xu, Nick Fabina, Heather D'Angelo]; and National Geographic [Helen Fox, Brianna Bambic, Brian Free, Zoe Lieb] and Great Barrier Reef Foundation [Petra Lundgren, Kirsty Bevan, Sarah Castine]. Attributions of contributed field data or maps for the reference sample creation are available at: https://allencoralatlas.org/attribution/
DOI: 10.6084/m9.figshare.22272067.v2
title: LauNuts: A Knowledge Graph to identify and compare geographic regions in the European Union

description: <strong>LauNuts</strong> is a RDF Knowledge Graph consisting of: Local Administrative Units (LAU) and Nomenclature of Territorial Units for Statistics (NUTS) https://w3id.org/launuts <br>
DOI: 10.6084/m9.figshare.24231388.v1
title: Quadrat_Count.csvData sets related to the manuscript "Pollinator planting establishment is influenced by seeding rate and pre-seeding management strategies"

description: To determine the relative importance of pre-seeding weed control, seed density, and post-seeding management on seed mix establishment success, we developed a multifactorial field experiment in a grass-dominated weed community. Data sets are related to the manuscript submission "Pollinator planting establishment is influenced by seeding rate and pre-seeding management strategies" to the journal <em>Ecological Applications.</em> To determine the relative importance of pre-seeding weed control, seed density, and post-seeding management on seed mix establishment success, we developed a multifactorial field experiment in a grass-dominated weed community. Data sets are related to the manuscript submission "Pollinator planting establishment is influenced by seeding rate and pre-seeding management strategies" to the journal <em>Ecological Applications.</em>
DOI: 10.6084/m9.figshare.27261489.v1
title: Additional file 1 of Chronic Overlapping Pain Conditions in people with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS): a sample from the Multi-site Clinical Assessment of ME/CFS (MCAM) study

description: Supplementary Material 1.
DOI: 10.17632/j8hghtwr2r
title: Identifying a limiting factor in the population dynamics of a threatened amphibian: The influence of extended female maturation on operational sex ratio

description: We investigated sex‐specific population dynamics in the threatened green and golden bell frog (Litoria aurea) using intensive capture‐recapture methods in a newly created wetland complex and control sites. As hypothesised, females took longer to reach maturity compared to males. The length of female maturation was 3.9 times greater than that of males (428.68 days ± 107.6 SD and 110.16 days ± 20.59 SD, respectively). This resulted in a one‐year delay in female population size increase compared to the male population. The operational sex ratio (OSR) in the second year of monitoring in the created wetlands had the most disproportionate male bias out of any year and any site (12/1 male/female, male proportion = 0.92 ± 0.89–0.94 95% CI). In the third year, the OSR had become less male biased (2.6/1, male proportion = 0.72 ± 65–0.78 95% CI), likely attributed to the maturing of the females produced in the first year breeding events. We did not find any evidence that survival or detection probability influenced the observed OSRs in the created wetlands. Based on survival rates of each sex, we estimate that males are 77 times more likely to reach sexual maturity compared to females. We postulate that the combination of chytrid‐induced disease and sex‐biased maturation rates may be a driver of declines, especially in populations with limited recruitment. We encourage future research into investigating sex‐specific population dynamics of amphibians, especially relating to reintroduction ecology. We have included the capture-recapture data of this study and the associated code embedded in R studio of the POPAN models used to estimate the super-population size of each year at every site.
DOI: 10.6084/m9.figshare.25517752.v1
title: Script to quiery GBIF and get the names of species in each genera that contain sound producing species from The potential of acoustic monitoring of aquatic insects for freshwater assessment

description: Aquatic insects are a major indicator used to assess ecological condition in freshwater environments. Yet current methods to collect and identify aquatic insects require advanced taxonomic expertise and rely on invasive techniques that lack spatio-temporal replication. Passive Acoustic Monitoring (PAM) is emerging as a non-invasive complementary sampling method allowing broad spatio-temporal and taxonomic coverage. The application of PAM in freshwater ecosystems has already proven useful, revealing unexpected acoustic diversity produced by fish, amphibians, submerged aquatic plants, and aquatic insects. However, the identity of species producing sounds remains largely unknown. Among them, aquatic insects appear to be the major contributor to freshwater soundscapes. Here, we estimate the potential number of soniferous aquatic insects worldwide using data from the Global Biodiversity Information Facility. We found that four aquatic insect orders produce sounds totalling over 7000 species. This number is likely underestimated due to poor knowledge of aquatic insects bioacoustics. We then assess the value of sound producing aquatic insects to evaluate ecological condition and find that they might be useful despite having similar responses in pristine and degraded environments in some cases. Both expert and automated identifications will be necessary to build international reference libraries and to conduct acoustic bioassessment in freshwaters.This article is part of the theme issue ‘Towards a global toolkit for insect biodiversity monitoring’.
DOI: 10.6084/m9.figshare.3502445.v24
title: The Infant Gut Dataset

description: The archive file contains the merged anvi'o profile, and the contigs database for the Infant Gut data from Sharon et al. that is suitable to analyze with anvi'o v7.1 or later.<br>Please see http://merenlab.org/tutorials/infant-gut/ for details.
DOI: 10.6084/m9.figshare.4811422.v1
title: Latihan Pemodelan Sederhana Metode Self-Potensial

description: Latihan pemodelan self-potensial sederhana untuk kasus bola, silinder, dan lempeng.<br>
DOI: 10.6084/m9.figshare.21973346.v3
title: Food security and Land use changes Household Data.sav

description: Land use changes, spurred by human growth, are still shaping biodiversity worldwide. However, land ownership rights and land use changes have not been sufficiently studied. This study examined land ownership rights and agricultural land usage in Mwatate Sub County, Taita County, Kenya. The study sampled 301 stratified disproportionate and simple random households using a cross sectional design. Data entry and analysis used SPSS 23.0. The Neo-Malthusian hypothesis is utilized to analyze the study results, which demonstrate higher population growth and increased anthropogenic forces on agricultural land. This was due to unsustainable land use practices such deforestation, tree logging, high fuelwood use, clearing bushes for human settlement and cultivation, traditional farming methods, and reliance on agriculture for livelihood. A 95%-confidence Chi-square investigation found a strong link between agricultural land use changes and land ownership rights. Agriculture as a primary sustenance led to deforestation, inefficient farming methods, and bush clearing for cultivation. The study suggests giving households the skills to diversify their income to reduce their dependence on agricultural land use. Land use policy and community education about environmental protection's benefits for agriculture are needed.
DOI: 10.17632/scmhg642ym
title: Dataset - "Sobrecarga, ansiedad, depresión y afrontamiento en cuidadores informales de pacientes con conducta adictiva. Un estudio correlacional "

description: Dataset que recoge los puntajes directos de los instrumentos empleados en el artículo "Sobrecarga, ansiedad, depresión y afrontamiento en cuidadores informales de pacientes con conducta adictiva. Un estudio correlacional"
DOI: 10.17632/ztgx2zn7jh
title: Data for: Counterstereotyping Can Change Children’s Thinking About Boys’ and Girls’ Toy Preferences

description: Data to accompany manuscript entitled: Counterstereotyping Can Change Children’s Thinking About Boys’ and Girls’ Toy Preferences
DOI: 10.6084/m9.figshare.28124558.v1
title: Hematopoiesis

description: Hematopoiesis dataset, original from Qiu <i>et al.</i> (https://doi.org/10.1016/j.cell.2021.12.045)
DOI: 10.6084/m9.figshare.13019166.v1
title: Raw data used in statistical analyses from Octopamine and dopamine mediate waggle dance following and information use in honeybees

description: Individual information on waggle dances and feeder visits
DOI: 10.6084/m9.figshare.28069883.v1
title: Supplementary Material for: ISPAD Clinical Practice Consensus Guidelines 2024 Diabetes Technologies: Glucose Monitoring

description: SUMMARY OF WHAT IS NEW OR DIFFERENT
Since the 2022 ISPAD Guidelines, there have been advancements in continuous glucose monitoring (CGM) devices and the evidence supporting their use. Research on CGM effectiveness has proliferated, encompassing long-term observational studies, data from registries, and clinical trials.
Changes to previous recommendations include: 
1. A stronger emphasis on the pivotal role of CGM in managing diabetes among children and adolescents with Type 1 diabetes (T1D), especially from diabetes diagnosis, as well as potential benefits in youth with Type 2 diabetes (T2D). 
2. A greater recognition of the importance of ongoing education and training for both health professionals and families in CGM use, including data interpretation, to ensure successful adoption and to optimize outcomes.
3. Updated information on CGM systems, technical aspects, and key features to guide device suitability and inform individual choice.
4. Increased evidence concerning CGM benefits for decreasing diabetic ketoacidosis (DKA) and severe hypoglycemic events; and improving quality of life in children and adolescents with T1D. 
5. Recent developments concerning practical considerations associated with CGM utilization, encompassing topics such as exercise, skin concerns and use in telemedicine.
DOI: 10.6084/m9.figshare.4750933.v1
title: Supplementary Material for: Identification of Infection- and Defense-Related Genes via a Dynamic Host-Pathogen Interaction Network Using a Candida Albicans-Zebrafish Infection Model

description: <em>Candida albicans</em> infections and candidiasis are difficult to treat and create very serious therapeutic challenges. In this study, based on interactive time profile microarray data of <i>C. albicans </i>and zebrafish during infection, the infection-related protein-protein interaction (PPI) networks of the two species and the intercellular PPI network between host and pathogen were simultaneously constructed by a dynamic interaction model, modeled as an integrated network consisting of intercellular invasion and cellular defense processes during infection. The signal transduction pathways in regulating morphogenesis and hyphal growth of <i>C. albicans</i> were further investigated based on significant interactions found in the intercellular PPI network. Two cellular networks were also developed corresponding to the different infection stages (adhesion and invasion), and then compared with each other to identify proteins from which we can gain more insight into the pathogenic role of hyphal development in the <i>C. albicans</i> infection process. Important defense-related proteins in zebrafish were predicted using the same approach. The hyphal growth PPI network, zebrafish PPI network and host-pathogen intercellular PPI network were combined to form an integrated infectious PPI network that helps us understand the systematic mechanisms underlying the pathogenicity of <i>C. albicans</i> and the immune response of the host, and may help improve medical therapies and facilitate the development of new antifungal drugs.
DOI: 10.6084/m9.figshare.3479609.v1
title: Identification and characterization of d-arabinose reductase and d-arabinose transporters from <i>Pichia stipitis</i>

description: d-xylose and l-arabinose are the major constituents of plant lignocelluloses, and the related fungal metabolic pathways have been extensively examined. Although <i>Pichia stipitis</i> CBS 6054 grows using d-arabinose as the sole carbon source, the hypothetical pathway has not yet been clarified at the molecular level. We herein purified NAD(P)H-dependent d-arabinose reductase from cells grown on d-arabinose, and found that the enzyme was identical to the known d-xylose reductase (XR). The enzyme activity of XR with d-arabinose was previously reported to be only 1% that with d-xylose. The <i>k</i><sub>cat</sub>/<i>K</i><sub>m</sub> value with d-arabinose (1.27 min<sup>−1</sup> mM<sup>−1</sup>), which was determined using the recombinant enzyme, was 13.6- and 10.5-fold lower than those with l-arabinose and d-xylose, respectively. Among the 34 putative sugar transporters from <i>P. stipitis</i>, only seven genes exhibited uptake ability not only for d-arabinose, but also for d-glucose and other pentose sugars including d-xylose and l-arabinose in <i>Saccharomyces cerevisiae</i>. d-Xylose reductase, encoded by <i>XYL1</i> gene, plays as an aldose reductase involved not only in d-xylose and l-arabinose but also d-arabinose metabolism.
DOI: 10.6084/m9.figshare.17097062.v1
title: EVA-2021-155-OA.R1 Deer population genomics

description: Population genomics of free-ranging Great Plains white-tailed and mule deer reflects a long history of interspecific hybridization<br>Associated scripts and SNP data files
DOI: 10.6084/m9.figshare.28926215.v1
title: Dataset - Groundwater Quality in Surabaya Lamongan Groundwater Basin - SLGB

description: This Data Descriptor paper examines water quality in the Bojonegoro region, specifically within the Surabaya-Lamongan Groundwater Basin (SLGB). Sampling was conducted at three locations: a public service area, a settlement, and an agricultural area. The research aims to assess the impact of land use, geological conditions, and hydrogeology on groundwater quality.Water samples were collected from 2017 to 2022, during both wet and dry seasons, resulting in a comprehensive dataset consisting of 1091 lines of data. The samples were analyzed for various chemical parameters, including phosphate, ammonia, nitrate, nitrite, sulphate, fluoride, cadmium, zinc, iron, copper, chloride, total chromium, manganese, total dissolved solids (TDS), turbidity, temperature, pH, and hardness. The findings indicate that most parameters meet the drinking water standards set by the Minister of Health Regulation No. 2 of 2023. However, elevated levels of phosphate, ammonia, and nitrate were observed, particularly in the agricultural area, suggesting potential agricultural runoff.The measurements were conducted to monitor and understand groundwater quality trends over time, identify potential sources of contamination, and provide scientific data to support sustainable groundwater management practices. This is particularly important as contamination phenomena, such as elevated levels of phosphate and nitrate, can affect shallow groundwater used by the public for drinking and domestic purposes. The study also highlights the lithological characteristics of the basin, which is dominated by loose deposits of soil, clay, and sand. These layers play crucial roles in groundwater storage and transmission, with clay layers acting as barriers to flow. Hydrogeological measurements reveal low transmissivity values, explaining the localized distribution of groundwater contamination.This research provides valuable insights into groundwater quality and the factors affecting it in the Surabaya-Lamongan Groundwater Basin, emphasizing the need for sustainable groundwater management practices.