cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.b2rbnzsp1
title: Daily SPEI dataset in China from 1980 to 2100

description: The future state of drought in China under climate change remains
 uncertain. This study investigates drought events, focusing on the region
 of China, using simulations from five global climate models (GCMs) under
 three Shared Socioeconomic Pathways (SSP1-2.6, SSP3-7.0, and SSP5-8.5)
 participating in the Inter-Sectoral Impact Model Intercomparison Project
 (ISIMIP3b). The daily Standardized Precipitation Evapotranspiration Index
 (SPEI) is employed to analyze drought severity, duration, and frequency
 over three future periods. Evaluation of the GCMs’ simulations against
 observational data indicates their effectiveness in capturing historical
 climatic change across China. The rapid increase in CO2 concentration
 under high emission scenarios in the mid- and late- future century
 (2040–2070 and 2071–2100) substantially influences vegetation behavior via
 regulation on leaf stomata and canopy structure. This regulation
 decelerates the increase in potential evapotranspiration, thereby
 mitigating the sharp rise in future drought occurrences in China. These
 findings offer valuable insights for policymakers and stakeholders to
 develop strategies and measures for mitigating and adapting to future
 drought conditions in China.
description: # Daily SPEI dataset in China from 1980 to 2100
 The daily Standardized
 Precipitation Evapotranspiration Index (SPEI) dataset used the PM-CO2
 model to calculate PET with a spatial resolution of 0.5° × 0.5° from 1980
 to 2100. This dataset investigates drought, focusing on the region of
 China, using simulations from five global climate models (GCMs) under
 three Shared Socioeconomic Pathways (SSP1-2.6, SSP3-7.0, and SSP5-8.5)
 participating in the Inter-Sectoral Impact Model Intercomparison Project
 (ISIMIP3b).
DOI: 10.15468/dl.4gfptx
title: Occurrence Download

description: A dataset containing 1025 records in GBIF matching the query:
SELECT
 '481' AS fish_cell,
 GBIF_MGRSCode(1000, decimalLatitude, decimalLongitude, 0) AS cell, -- NO randomization
 COUNT(DISTINCT speciesKey) AS species_richness
 FROM occurrence
 WHERE hasCoordinate = TRUE
 AND speciesKey IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND decimalLatitude &gt;= 46.479780028101516
 AND decimalLatitude &lt;= 51.21395264452012
 AND decimalLongitude &gt;= 56.64958282616588
 AND decimalLongitude &lt;= 66.81438016390939
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND (coordinateUncertaintyInMeters &lt;= 100 OR coordinateUncertaintyInMeters IS NULL)
 GROUP BY fish_cell, cell

 The dataset's 1025 records were derived from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003857-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.612jm649v
title: Eukaryotic gene trees with 150 leaves

description: Gene loss is an important process in gene and genome evolution. If a gene
 is present at the root of a rooted binary phylogenetic tree and can be
 lost in one descendant lineage, it can be lost in other descendant
 lineages as well, and potentially can be lost in all of them, leading to
 extinction of the gene on the tree. In that case, just before the gene
 goes extinct in the rooted phylogeny, there will be one lineage that still
 retains the gene for some period of time, representing a ‘last-one-out’
 distribution. If there are many (hundreds) of leaves in one clade of a
 phylogenetic tree, yet only one leaf possesses the gene, it will look like
 the result of a recent gene acquisition, even though the distribution at
 the tips was generated by loss. Here we derive the probability of
 observing last-one-out distributions under a Markovian loss model and a
 given gene loss rate μ. We find that the probability of observing such
 cases can be calculated mathematically, and can be surprisingly high,
 depending upon the tree and the rate of gene loss. Examples from real data
 show that gene loss can readily account for the observed frequency of
 last-one-out gene distribution patterns that might otherwise be attributed
 to lateral gene transfer.
description: The trees were extracted from a clustering of 150 eukaryotic
 genomes. Protein sequences  were analyzed with an All-vs-All BLAST search.
 Reciprocal best hits were extracted and further analyzed for their
 respective global identity. Reciprocal best hits with an e-value smaller
 than 1e-10 and a global identity of 25% or more were used for the
 clustering with MCL. Trees were constructed from the
 resulting clusters using IQTree. The 10 analyzed trees
 from this analysis were randomly selected from all trees with exactly 150
 leaves.
description: # Eukaryotic gene trees with 150 leaves
 [https://doi.org/10.5061/dryad.612jm649v](https://doi.org/10.5061/dryad.612jm649v) This dataset consists of 10 eukaryotic gene trees that were used for the analysis.
DOI: 10.5061/dryad.w3r2280zc
title: Number of SHB in the colonies and colony defensiveness

description: Small hive beetles (SHB), Aethina tumida, are free-flying parasites, which
 actively seek and invade honeybee host colonies. It seems as if SHB may
 prefer colonies in the shade. Further, it has been stated that SHB invade
 any colony with equal impunity. However, the impact of colony
 aggressiveness on SHB infestation levels has never been quantified. Here,
 we confirm significantly higher SHB infestation levels in shaded colonies
 and further suggest that host colony aggression is of minor importance
 only. In the state of Rio de Janeiro, Brazil, local Africanized honeybee
 colonies at a sunny (N=10) and at a shaded apiary (N=11) were tested for
 aggression and visually screened for SHB infestations using standard
 methods. Both colony aggression and infestation levels were variable, but
 not significantly correlated. The results confirm that infestation levels
 are significantly higher in the shaded apiary compared to the sun-exposed
 one. Further, host colony aggression is unlikely to interfere with SHB
 infestation levels of colonies. Instead, SHB seem to remain even in
 aggressive colonies. The underlying mechanisms for the significant
 differences in colony infestation levels due to sun exposure remain
 unknown. Beekeepers are advised to prefer sun-exposed apiary locations in
 regions, where SHB are a pest of concern.
description: # Number of SHB in the colonies and colony defensiveness
 [https://doi.org/10.5061/dryad.w3r2280zc](https://doi.org/10.5061/dryad.w3r2280zc) We have submitted our raw data (Number of SHB in the colonies and colony defensiveness.csv) ## Description of the data and file structure Number of SHB in the colonies and colony defensiveness.csv Apiary - The name of the apiary where measurements were taken Hive number - Honey bee colony ID for which measurements were taken Number of bee stings in the ball - Number of honey bee stings that were attached to a ball of felt that was swung in front of the colony entrance for 1 minute N of beetles in the hive - number of SHB adults that were collected in a given colony Sun-exposure - states whether colonies were located in the shade or were sun exposed. ## Sharing/Access information All the data was manually collected and no other sources have been used.
DOI: 10.15468/dl.wc5dzy
title: Occurrence Download

description: A dataset containing 369 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hyperoodon planifrons"
 ]
}

 The dataset includes 369 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003866-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.51c59zwg5
title: Decreased dust particles amplify the cloud cooling effect by regulating cloud ice formation over the Tibetan Plateau

description: Ice-nucleating particles (INPs) can initiate cloud ice formation,
 influencing cloud radiative effects (CRE) and climate. However, the
 knowledge of INP sources, concentrations, and their impact on CRE over the
 Tibetan Plateau (TP) - a highly climate-sensitive region - remains largely
 hypothetical. Here, we integrated data from multi-source satellite
 observations and snowpack samples collected from five glaciers to
 demonstrate that dust particles constitute primary INP sources over the
 TP. The springtime dust influxes lead to seasonally elevated ice
 concentrations in mixed-phase clouds. Furthermore, the decadal reduction
 in dustiness from 2007 to 2019 results in decreased springtime dust INPs,
 thereby amplifying the cooling effect of clouds over the TP, with a
 1.98±0.39 W m-2 reduction in surface net CRE corresponding to a 0.01
 decrease in dust optical depth. Our findings elucidate new pathways of
 climate feedback from an atmospheric INP perspective, especially
 highlighting the crucial role of dust in aerosol-cloud interactions.
description: 1. Dataset_1 showed the ice-nucleating particle (INP) concentrations per
 volume of sample-melt water (N_(INP_water)) and the INP concentrations per
 volume of air (N_(INP_air)). These data were used in Figs. 3, 4, S7, and
 S8. 2. Dataset_2 showed the element concentrations (Ca, Mg, Al, K, Mn, Fe,
 and Sr) of the LHG and AL samples. These data were used in the Fig. 4. 3.
 Dataset_3 showed the ratio of water-soluble calcium ion to elemental
 calcium (Ca2+/Ca) for samples collected in LHG and AL. These data were
 used in the Fig. 4. 4. Dataset_4 showed the hydrogen and oxygen isotopes
 (Delta D and Delta 18O) of collected snowpack samples. These data were
 used in the Fig. S8. 5. Dataset_5 with 3 sheets showed the statistical
 analysis results of backward trajectories coupled with land cover types.
 These data were used in the Fig. S16. 6. Dataset_6 with 2 sheets showed
 the cloud ice number concentration over the TP from June 2006 to July
 2019. These data were used in the Fig. 2. 7. Dataset_7 showed the results
 of satellite and reanalysis data over the TP from June 2006 to July 2019,
 including cloud fraction, cloud base height, cloud top height, cloud top
 temperature, AOD, nsAOD, DOD, atmospheric water vapor, TOA CRE NET, and
 SFC CRE NET. These data were used in Figs. 2, 3, 5, 6, S2, S3, and
 S17-S23. 8. Dataset_8 showed the dry and wet deposition results of dust
 particles over the TP from June 2006 to July 2019. If you have further
 questions please contact with the corresponding author. Note: The cells
 marked with "n/a" in Dataset_6 and Dataset_7 indicate no valid
 data, which is due to the lack of available or usable satellite and
 reanalysis data.
DOI: 10.6084/m9.figshare.31055839
title: A <i>pbpB1</i> mutation causing reduced β-lactam susceptibility in clinical <i>Listeria monocytogenes</i> isolates

description: Listeriosis is a severe foodborne infection and associated with high mortality. Treatment is based on ampicillin, amoxicillin or penicillin, often combined with gentamicin, but meropenem is also used occasionally. β-lactam resistant <i>Listeria monocytogenes</i> isolates are infrequently described but the mechanism of resistance is not known. A clinical <i>L. monocytogenes</i> isolate with reduced β-lactam susceptibility was collected from a German listeriosis patient. Resistance profiling, whole genome sequencing, comparative genomics and genetic experiments were used to identify the causative DNA polymorphism. A W428R substitution near the active site of penicillin binding protein B1 (PBPB1) was identified as the cause of reduced ampicillin, amoxicillin and meropenem susceptibility. Further clinical <i>L. monocytogenes</i> isolates with similar susceptibility profiles were found by searching the genome database of the German consultant laboratory for <i>Listeria</i> for <i>pbpB1 W428R</i>-positive isolates. Spontaneous suppressors of <i>L. monocytogenes</i> reference strain EGD-e with reduced β-lactam susceptibility were selected during ampicillin exposure and their genomes were sequenced. The same <i>pbpB1</i> mutation emerged in strain EGD-e during cultivation in the presence of ampicillin. Further experiments showed that meropenem also promotes the development of resistant suppressor mutants with <i>pbpB1</i> mutations. Our work demonstrates that β-lactam susceptibility of <i>L. monocytogenes</i> can be reduced through specific substitutions in PBPB1. These mutations are potentially selected for during β-lactam treatment.
DOI: 10.6084/m9.figshare.31055839.v1
title: A <i>pbpB1</i> mutation causing reduced β-lactam susceptibility in clinical <i>Listeria monocytogenes</i> isolates

description: Listeriosis is a severe foodborne infection and associated with high mortality. Treatment is based on ampicillin, amoxicillin or penicillin, often combined with gentamicin, but meropenem is also used occasionally. β-lactam resistant <i>Listeria monocytogenes</i> isolates are infrequently described but the mechanism of resistance is not known. A clinical <i>L. monocytogenes</i> isolate with reduced β-lactam susceptibility was collected from a German listeriosis patient. Resistance profiling, whole genome sequencing, comparative genomics and genetic experiments were used to identify the causative DNA polymorphism. A W428R substitution near the active site of penicillin binding protein B1 (PBPB1) was identified as the cause of reduced ampicillin, amoxicillin and meropenem susceptibility. Further clinical <i>L. monocytogenes</i> isolates with similar susceptibility profiles were found by searching the genome database of the German consultant laboratory for <i>Listeria</i> for <i>pbpB1 W428R</i>-positive isolates. Spontaneous suppressors of <i>L. monocytogenes</i> reference strain EGD-e with reduced β-lactam susceptibility were selected during ampicillin exposure and their genomes were sequenced. The same <i>pbpB1</i> mutation emerged in strain EGD-e during cultivation in the presence of ampicillin. Further experiments showed that meropenem also promotes the development of resistant suppressor mutants with <i>pbpB1</i> mutations. Our work demonstrates that β-lactam susceptibility of <i>L. monocytogenes</i> can be reduced through specific substitutions in PBPB1. These mutations are potentially selected for during β-lactam treatment.
DOI: 10.15468/dl.estem4
title: Occurrence Download

description: A dataset containing 59213 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chordata",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1990",
 "Year is less than or equal to 2025",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Occurrence evidence)",
 "CoordinateUncertaintyInMeters is less than or equal to 500",
 "Geometry POLYGON ((-120.2668 34.82019, -120.1432 34.68484, -120.0301 34.61333, -119.8986 34.56829, -119.8515 34.55977, -119.7408 34.49743, -119.607 34.45778, -119.4654 34.44798, -119.3255 34.46868, -119.251 34.49342, -119.1467 34.43474, -119.0133 34.3944, -118.8719 34.38387, -118.732 34.40384, -118.6029 34.45298, -118.4934 34.52799, -118.4109 34.62381, -118.3808 34.67988, -118.278 34.7507, -118.195 34.84634, -118.1447 34.95639, -118.1306 35.07338, -118.1673 35.26602, -118.1704 35.29585, -118.1639 35.41325, -118.1948 35.52803, -118.2612 35.63232, -118.3587 35.71898, -118.4806 35.78203, -118.6186 35.81712, -118.667 35.82202, -118.6813 36.03752, -118.7489 36.19644, -118.8297 36.29408, -118.9393 36.37141, -119.0701 36.42309, -119.2132 36.44553, -119.3859 36.43766, -119.5259 36.40495, -119.6504 36.34402, -119.7379 36.28321, -119.8757 36.29752, -120.02 36.28225, -120.1007 36.2592, -120.0584 36.35964, -120.047 36.47673, -120.0637 36.60773, -120.06 36.72513, -120.076 36.85609, -120.1251 36.96675, -120.2085 37.0634, -120.3206 37.13942, -120.3459 37.15165, -120.4821 37.19611, -120.6282 37.21076, -120.7741 37.19457, -120.8952 37.15503, -121.036 37.15629, -121.1787 37.12755, -121.307 37.07017, -121.4121 36.98812, -121.4869 36.88707, -121.5262 36.77396, -121.5436 36.65304, -121.5222 36.53686, -121.4643 36.42907, -121.3739 36.33697, -121.3132 36.29298, -121.2421 36.19052, -121.1408 36.10633, -120.9503 36.01422, -120.811 35.98191, -120.61 35.97881, -120.4693 36.00688, -120.3773 36.04097, -120.419 35.9404, -120.4298 35.82324, -120.4028 35.70781, -120.3755 35.65326, -120.4494 35.56312, -120.4968 35.45215, -120.5074 35.33494, -120.4805 35.21949, -120.4181 35.11364, -120.3408 35.03704, -120.3219 34.92867, -120.2668 34.82019))"
 ]
}

 The dataset includes 59213 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003848-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/alygqs
title: Replication Data for: Does Islamist Terrorism Still Affect Political Attitudes?

description: Data and statistical code necessary for replicating "Does Islamist Terrorism Still Affect Political Attitudes?", forthcoming in the European Journal of Political Research.
DOI: 10.5061/dryad.b2rbnzsp2
title: The origins of mammal growth patterns during the Jurassic mammalian radiation

description: We use synchrotron X-ray tomography of annual growth increments in the
 dental cementum of mammaliaforms (stem and crown fossil mammals) from
 three faunas across the Jurassic to map the origin of patterns of
 determinate growth, which is intrinsically related to mammalian
 endothermy. Although all fossils studied exhibited slower growth rates,
 longer lifespans, and delayed sexual maturity relative to comparably sized
 extant mammals, the earliest crown mammals developed significantly faster
 growth rates in early life that reduced at sexual maturity (determinate
 growth), compared to stem mammaliaforms. Estimation of basal metabolic
 rates (BMRs) suggests some fossil crown mammals had BMRs approaching the
 lowest rates of extant mammals. We suggest mammalian determinate growth
 first evolved during their mid-Jurassic adaptive radiation, although
 growth remained slower than in extant mammals.
description: # The origins of mammal growth patterns during the Jurassic mammalian
 radiation
 [https://doi.org/10.5061/dryad.b2rbnzsp2](https://doi.org/10.5061/dryad.b2rbnzsp2) ## Description of the data and file structure This archive contains example data for X-ray tomographic scans of fossilised cementum from Mesozoic mammaliaform taxa studied for this research project, which was collected during several tomographic experiments at synchrotron X-ray sources. Each folder contains Three subfolders representing the preservational category. * Category A comprises the best-preserved specimens. * Category B comprises specimens of less preservational quality than Category A but was still used in analyses. * Category C comprises specimens deemed of too low preservational quality to use in analyses. Each subfolder contains a PDF document for each specimen, comprising: 1. an example of a tomographic slice of the tooth root of the respective fossil specimen. 2. an image highlighting the region selected for analysing preserved cementum increments (in yellow). 3. the Region highlighted in (b), is isolated and straightened, with an example radial transect (yellow line) through the cementum. 4. grayscale values along the transect highlighted in (c), with the mean, upper, and lower standard deviations of values within 5 sections along the transect highlighted. ## Sharing/Access information This data has also been uploaded to Figshare and will become publically available at: [https://doi.org/10.6084/m9.figshare.21959828](https://doi.org/10.6084/m9.figshare.21959828) upon acceptance of this manuscript.
DOI: 10.5061/dryad.zcrjdfnkw
title: Ultraconserved element data for phylogenomic analysis of Ghatippus paschima jumping spider (Salticidae, Plexippini, Plexippina)

description: Based on UCE phylogenomic data, we propose a new genus and species of
 plexippine jumping spider, Ghatippus paschima, discovered in the Western
 Ghats of India. This study, which includes 18 taxa (15 ingroup taxa and 3
 outgroup taxa), is also the first to resolve the broader relationships
 within Plexippina using UCE data.
description: # Ultraconserved element data for phylogenomic analysis of Ghatippus
 paschima jumping spider (Salticidae, Plexippini, Plexippina)
 The dataset includes (1)
 ultraconserved element (UCE) matrices and (2) concatenated matrices used
 in the phylogenomic analysis of a new plexippine jumping spider genus and
 species, Ghatippus paschima. The dataset (2) also comprises 10
 maximum-likelihood trees and 1000 bootstrap trees generated using IQ-TREE.
 ## Methods We used target enrichment UCE sequencing, dual-indexed
 TruSeq-style libraries were prepared following methods used previously
 (e.g. Maddison et al. 2020b). Targeted enrichment using the RTA_v2
 probeset (Zhang et al. 2023) was performed using the myBaits v. 4.01
 protocol (Arbor Biosciences,
 ). Libraries were sequenced on partial lanes of illumina NovaSeq 6000 S4 runs with 150-bp paired end reads. Raw demultiplexed reads were processed with PHYLUCE v. 1.6 (Faircloth 2016), quality control and adapter removal were performed with Illumiprocessor wrapper (Faircloth 2013), and assemblies were created with SPAdes v. 3.14.1 (Nurk et al. 2013) using options at default settings. The UCE loci were recovered using RTA_v2 probeset (Zhang et al. 2023). The recovered loci were aligned with MAFFT using L-INS-i option (Katoh and Standley 2013). The aligned UCE loci were then trimmed with Gblocks (Castresana 2000; Talavera and Castresana 2007) using –b1 0.5, –b2 0.7, –b3 8, –b4 8, –b5 0.4 setting and re-aligned with MAFFT using L-INS-i option within Mesquite v. 3.61 (Maddison and Maddison 2019). As in the analysis of Maddison et al. (2020a), suspected paralogous loci were deleted based on branch lengths in RAxML (Stamatakis 2014) inferred gene trees. Loci represented in fewer than 10 taxa total were deleted. ## Description of the data (1) A compressed folder (UCE_matrices_from_SPAdes_preGblocks.zip) containing UCE matrices recovered from SPAdes assemblies. These matrices are aligned but are not trimmed using Gblocks Gblocks. (2) A NEXUS file (Ghatippus_paschima_ConcatenatedMatricesWithTrees.nex.zip) of Gblocks trimmed, re-aligned, concatenated dataset of 3060 UCE matrices for 18 (15 ingroup and 3 outgroup) taxa used for maximum likelihood phylogenetic and bootstrap analysis.
DOI: 10.7910/dvn/fg5qqb
title: Replication Data for: Political trust and elite closure: Evidence from Latin America

description: This dataset contains the replication materials for the article “Political trust and elite closure: Evidence from Latin America”, forthcoming in Party Politics (2026). The data consist of a harmonized selection of variables from LAPOP surveys covering 18 Latin American countries over the period 2006–2018, combined with country-year level variables from the PELA-USAL elite survey, V-Dem, and the International Labour Organization (ILO). The repository includes processed datasets and replication scripts required to reproduce all analyses, tables, and figures reported in the article.
DOI: 10.25625/h16sz6/ccoseh
title: ESRF_mercedesStar_report.pdf

description: :unav
DOI: 10.25625/h16sz6/7xck2l
title: ESRF_mushroom_report_full_montages.pdf

description: :unav
DOI: 10.25625/h16sz6/nv75oy
title: ESRF_cone_report.pdf

description: :unav
DOI: 10.25625/h16sz6/gawudx
title: ESRF_blade_report.pdf

description: :unav