cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.3r9d92
title: Occurrence Download

description: A dataset containing 1062 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (EOD – eBird Observation Dataset, iNaturalist Research-grade Observations, 2022_snc_observation_citizensciencemonitoring_17710, RU-BIRDS.RU, Birds observations database from Russia and neighboring regions. Zoological Museum of M.V. Lomonosov Moscow State University., Observation.org, Nature data from around the World, 2023_deoksan_bird_observation_information_nsmk_731, Waarnemingen.be - Non-native animal occurrences in Flanders and the Brussels Capital Region, Belgium, 2021_kbif_joint_survey_bird_observation_information_363, 2022_nsmk_biodiversity_observations_bi_1777, 2021_kbif_joint_survey_bird_observation_information_1329)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (June, July, August, September)",
 "TaxonKey is Turdus hortulorum P.L.Sclater, 1863",
 "Year 2021-2024"
 ]
}

 The dataset includes 1062 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048463-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23728/b2share.47f7f57c57194862aed4a04be7e69145
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: humidity in 2017 (04h UTC) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of humidity during 2017, aggregated by hour (04h UTC).
DOI: 10.34816/efa.archives.429288
title: Philippes-R4783-004A-Inscription

description: Référence : R4783-004A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.23728/b2share.fe3195fd158f41189141ff150b1db8a2
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: humidity in 2017 (04h UTC) (clipped GeoTIFF)

description: Clipped GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of humidity during 2017, aggregated by hour (04h UTC).
DOI: 10.34816/efa.archives.429287
title: Philippes-R4783-003A-Inscription

description: Référence : R4783-003A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.15468/dl.ss6mb4
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macaranga magna Turrill"
 ]
}

 The dataset includes 29 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048464-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34816/efa.archives.429286
title: Philippes-R4783-002A-Inscription

description: Référence : R4783-002A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.23728/b2share.ad15f2381c1741f7b1f81417cdfeebad
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: humidity in 2017 (04h UTC) (clipped PNG)

description: PNG image representing clipped interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of humidity during 2017, aggregated by hour (04h UTC).
DOI: 10.34816/efa.archives.429285
title: Philippes-R4783-001A-Inscription

description: Référence : R4783-001A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.15468/dl.x4z2ec
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Linaria zaissanica Semiotr."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048465-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.23728/b2share.e443b077b81f45778f2ca45f6e9037df
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2017 at 04h UTC (dataset)

description: csv file including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2017, aggregated by hour (04h UTC).
DOI: 10.34816/efa.archives.429284
title: Philippes-R4782-012A-Inscription

description: Référence : R4782-012A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.34816/efa.archives.429283
title: Philippes-R4782-011A-Inscription

description: Référence : R4782-011A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.23728/b2share.11ffc983907947ebb0de3b91a246130c
title: Open Scholarship Week 2021 - session FAIR and Open Data Workshop - from finish to start - results data re-use questionnaire

description: The Open Scholarship Week provides researchers the opportunity to learn about the benefits of various Open Science practices and is co-organised by the Open Scholarship Community Galway and the NUI Galway Library. The 2021 edition was held online in May 2021.

This data set contains the results of the session FAIR and Open Data Workshop. From various participants their role and opinion about open data and re-use was gathered using the online tool Menti. The results are stored in semi-colon-separated CSV-formatted files.
DOI: 10.34816/efa.archives.429282
title: Philippes-R4782-010A-Inscription

description: Référence : R4782-010A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.34816/efa.archives.429281
title: Philippes-R4782-009A-Inscription

description: Référence : R4782-009A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.34816/efa.archives.429280
title: Philippes-R4782-008A-Inscription

description: Référence : R4782-008A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.23728/b2share.0fdc420ac0fc4ce5b010a6354a58d37b
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2017 (04h UTC) (shapefile)

description: Shapefile including air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2017, aggregated by hour (04h UTC).
DOI: 10.34816/efa.archives.429279
title: Philippes-R4782-007A-Inscription

description: Référence : R4782-007A<br />Publication(s) : Inédit<br />Domaine : Épigraphie<br />
DOI: 10.23728/b2share.f4f2865c83164deeab14bcd833cfc458
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2017 (04h UTC) (interpolated GeoTIFF)

description: GeoTIFF file including interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2017, aggregated by hour (04h UTC).
DOI: 10.23728/b2share.99f179eef94549f082bf61b22235750e
title: Air quality data from the LIFE+RESPIRA project in Pamplona, Spain: CO in 2017 (04h UTC) (interpolated PNG)

description: PNG image representing interpolated air quality data from the LIFE+RESPIRA project (http://www.liferespira.eu/) in Pamplona, Spain, with measures of carbon monoxide during 2017, aggregated by hour (04h UTC).
DOI: 10.15468/dl.35d3fc
title: Occurrence Download

description: A dataset containing 88058 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lunaria annua L."
 ]
}

 The dataset includes 88058 records from 816 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048439-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.t0c3s/4
title: Hoskins et al. (Data for Fecundity)

description: Fecundity data from diallel crosses
DOI: 10.5061/dryad.t430k/1
title: Alignments_COI_16S_Per_comparison

description: Alignment of COI and 16S mitochondrial genes per comparison and per species. Two comparisons were performed, comparison 1 between Cana and Brewster (15 species) and comparison 2 between El Copé and Brewster (30 species).
DOI: 10.5061/dryad.t430k/2
title: Paz_et_al_locality_data_for_ENM

description: This excel file has georeferenced locality data used to construct ENM´s for all 30 species. It also describes wether data points were used for model training or model testing.
DOI: 10.5061/dryad.t5n3t/1
title: Data_Park et al

description: Excel file containing list of orchards surveyed for bees, with environmental, landscape and pesticide information included for each farm and collection event. Worksheet 2 provides a meta data/notes of each column's meaning.
DOI: 10.5061/dryad.t8534/1
title: Vegetation surveys data

description: This file contains data from vegetation surveys performed in study sites in Kerguelen Islands.The first row represent the percentage of vascular plant cover in each plot. Other rows contain the number of contacts of each plant species per plot (maximum 200 contacts per plot).
DOI: 10.5061/dryad.t8534/2
title: Unfiltered sequencing data for fungal metabarcode (table format)

description: This table contains pre-filtered sequencing data (i.e. usable merged reads assigned to their original sample) for fungal metabarcode. Amplicons were amplified using the primers ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012). Sequences were produced by a 2 x 250 bp paired-end sequencing on Illumina MiSeq platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40). (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences. (iv) Sequences containing ambiguous nucleotides or shorter than 100 bp were discarded. (v) Pure singleton (sequences with 1 read among the whole dataset) were removed.
DOI: 10.5061/dryad.t8534/3
title: Unfiltered sequencing data for fungal metabarcode (fasta format)

description: This fasta file contains unfiltered sequencing data (i.e. merged reads assigned to their original sample) for fungal metabarcode. Amplicons were amplified using the primers ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012).  Sequences were produced by a 2 x 250 bp paired-end sequencing on Illumina MiSeq platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40) (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences.
DOI: 10.5061/dryad.t8534/4
title: Filtered sequencing data (MOTUs) for fungal metabarcode

description: This table contains filtered MOTUs for the fungal metabarcode. Amplicons were amplified using ITS5 : 5'-GGAAGTAAAAGTCGTAACAAGG-3' (White et al. 1990) and 5.8S_fungi : 5'- CAAGAGATCCGTTGTTGAAAGTT-3' primers (Epp et al. 2012). Sequences were obtained by a 2 x 250 bp paired-end sequencing on Illumina MiSeq platform. Data filtering and MOTUs clustering were performed according to the procedure described in the supplementary materials of Pansu et al. (2015): 'Long-lasting modification of soil fungal diversity associated with the introduction of rabbits to a remote sub-Antarctic archipelago'.
DOI: 10.5061/dryad.t8534/5
title: Filtered sequencing data for plant metabarcode

description: This table contains the filtered sequences for the plant metabarcode. Amplicons were amplified using g (5'-GGGCAATCCTGAGCCAA-3') and h (5'-CCATTGAGTCTCTGCACCTATC-3') primers (Taberlet et al. 2007).The sequences have been produced by the Illumina technology (HiSeq 2500 platform, 2x100bp pair-end) and were filtered according to the filtering procedure describes in the supplementary materials of Pansu et al. (2015) ¬'Long-lasting modification of soil fungal diversity associated with the introduction of rabbit to a remote sub-Antarctic archipelago'.
DOI: 10.5061/dryad.t8534/6
title: Unfiltered sequencing data for plant metabarcode (fasta format)

description: This fasta file contains unfiltered sequencing data (i.e. merged reads assigned to their original sample) for plant metabarcode. Amplicons were amplified using the universal primers g (5'-GGGCAATCCTGAGCCAA-3') and h (5'-CCATTGAGTCTCTGCACCTATC-3') primers (Taberlet et al. 2007). Sequences were produced by a 2 x 100 bp paired-end sequencing on Illumina HiSeq 2500 platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40) (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences.
DOI: 10.5061/dryad.t8534/7
title: Pansu&al_BioLett_gh_unfiltered_dataset.txt

description: This table contains pre-filtered sequencing data (i.e. usable merged reads assigned to their original sample) for fungal metabarcode. Amplicons were amplified using the univerdal primers 'g' (5'-GGGCAATCCTGAGCCAA-3') and 'h' (5'-CCATTGAGTCTCTGCACCTATC-3') primers (Taberlet et al. 2007). Sequences were produced by a 2 x 100 bp paired-end sequencing on Illumina HiSeq 2500 platform. First processing steps were performed using the OBITOOLS software (http://metabarcoding.org/obitools) as follows: (i) Direct and reverse reads corresponding to the same sequence were aligned and merged thanks to the IlluminaPairEnd program. Only merged sequences with a high alignment quality score were retained (&gt;=40). (ii) Each merged sequence was assigned to its original sample using the tags information previously added to primers thanks to the ngsfilter program. For this step, only sequences containing both primers (with a maximum of 3 mismatches per primer) and exact tag sequences were selected. (iii) To reduce the file size, strictly identical sequences were merged together while keeping information about the origin of sequences. (iv) Sequences containing ambiguous nucleotides or shorter than 7 bp were discarded. (v) Pure singleton (sequences with 1 read among the whole dataset) were removed.
DOI: 10.5061/dryad.v6k91/1
title: Brook trout data from West Brook, Massachusetts

description: Individual information for fish from each of the 2001 to 2009 brook trout cohorts from West Brook, Massachusetts. Information includes: sample location, length, sex, full-sib family assignment, 12 microsatellite genotypes. See ReadMe file for more information.
DOI: 10.5061/dryad.v6k91/2
title: Brook trout data from Fridley Gap, Virginia

description: Individual information for brook trout from Fridley Gap, Virginia.  Information includes cohort, full-sib family assignments, and genotypes at 8 microsatellite loci.
DOI: 10.5061/dryad.vq33n/10
title: charadesMturkIconicData

description: Data from the second playback experiment with more and less iconic stimuli.
DOI: 10.5061/dryad.vq33n/11
title: charadesMturkData

description: Data from the Mturk playback experiment. The python code uses this to compute various derived variables.
DOI: 10.5061/dryad.vq33n/12
title: charadesMeaningAccuracyData

description: Processed data from the charades experiment. Contains average accuracy for each meaning. Used to compare to accuracies for each meaning in the playback experiment.
DOI: 10.5061/dryad.vq33n/13
title: meaningTemplatesData

description: Processed data from the charades experiment. Contains median, max, and min values of the acoustic variables for each meaning. Used for calculating iconic and median distance.
DOI: 10.5061/dryad.vq33n/14
title: wordPropsAnalysisPython

description: Python code to analyze the pronunciation of the target words for comparison to vocalizations.
DOI: 10.5061/dryad.vq33n/6
title: mturkAnalysisR

description: R code for analysis of playback experiments
DOI: 10.5061/dryad.vq33n/7
title: mturkAnalysisPython

description: Python code for analyzing data from the Mturk playback experiments.
DOI: 10.5061/dryad.vq33n/8
title: distanceCorrelationsProcessedData

description: Correlations between vocalization distance to the iconic and median meaning templates and probability of selecting each meaning.
DOI: 10.5061/dryad.vq33n/9
title: speakerNormsProcessedData

description: Normed means of the five acoustic variables for each vocalizer in the charades game.
DOI: 10.7267/n98g8hmr
title: Datasets from Upper-Crustal Magma Evolution at Intermediate Arc Systems: Uranium-Series Zircon Chronochemistry of the Unzen Volcanic Complex, Southwestern Japan

description: Crystal-rich (40~50 vol.%) intermediate lava has been the primary eruptive product of several recent hazardous eruptions: Mt. Pinatubo, Philippines (1991), Soufriere Hills, Montserrat (1995-present), and Unzen, Japan (1990-1995). Despite this association with such devastating eruptions, the formation, timing, and evacuation of such magma is not well understood: do such eruptions tap a long-lived, multi-cycle crystal mush, or, is it generated in a single magmatic cycle prior to eruption? This thesis explores this question through research at the Unzen Volcanic Complex (UVC), southwestern Japan, where a 500 ka history of crystal-rich dacitic dome eruptions has built the Unzen Volcanic Complex. Zircon geochronology has revealed the protracted history and evolution of the crystal mush zone at the Unzen Volcanic Complex. Individual zircon surface-interior age pairs, together with zircon age spectra, suggest that portions of this crystal mush have been present in the crust since at least the late Older Unzen period (≥200 ka). Significant zircon growth appears to occur throughout the eruptive hiatus (200-100 ka), suggesting that magmatic activity continued uninterrupted through this period. Increasing hafnium contents and decreasing titanium contents with time suggest that the system has evolved towards an overall more evolved system since the late Older Unzen Period. Additionally, Older Unzen eruption samples show restricted chemistry, suggesting that crystallization may have occurred in a more homogenous, less evolved and possibly warmer crystal mush, compared to zircon of Younger Unzen (100 ka – present) that record variable storage conditions skewed towards a more evolved, poorly-mixed crystal mush. These results lead to the conclusion that eruptions at Unzen are tapping a mature and long-lived, multi-cycle mush of significant longevity.
DOI: 10.5061/dryad.0j2q8/4
title: Isotopes_Water&Resin

description: File contains data for d15N and d18O (units = per mil) of water and resin samples collected in a California redwood forest. This file includes data from Figure 2 in associated manuscript.
DOI: 10.5061/dryad.0j2q8/5
title: Photosyn&LeafSugar

description: File contains data for C assimilation (nmol C/g/sec) and d13C of leaf sugar (units = per mil) collected in a California redwood forest. This file includes data from Figure 3 in associated manuscript.
DOI: 10.5061/dryad.0j2q8/6
title: RootUptake

description: File contains data for nitrogen uptake by roots of trees in a California redwood forest (units = ug N/mg root/hr). This file includes data from Figure 4 in associated manuscript.
DOI: 10.5061/dryad.21364/5
title: Newick file - BOLD neighbour-joining tree (K2P) for all 27,269 COI sequences &gt;500 bp from spiders collected in Canada

description: Spiders were collected from locations across Canada by various collectors. Sequencing was performed at the Canadian Centre for DNA Barcoding, and the sequences uploaded to BOLD Systems. Sequence data was obtained and a Taxon ID Tree was created by Jeremy deWaard on BOLD Systems using a Kimura 2 Parameter Distance Model. Sequences were aligned using the BOLD Aligner. Data file is a Newick tree file downloaded from BOLD.
DOI: 10.5061/dryad.251r0/1
title: Microsatellite_Genetic_Data_Bombus
DOI: 10.5061/dryad.2fg10/1
title: Representation of trnL-P6 metabarcode sequences across samples

description: A matrix of samples by sequences reporting the count of sequence reads for each trnL-P6 sequence in each sample Column names refer to the sequence identities in the Supporting Information Appendix Table S3, where taxonomic information about each sequence is reported.
DOI: 10.5061/dryad.2fg10/2
title: Representation of ITSpoa metabarcode sequences across samples

description: A matrix of samples by sequences reporting the count of sequence reads for each ITSpoa sequence (i.e., Poaceae-specific ITS marker) in each sample. Column names refer to the sequence identities in the Supporting Information Appendix Table S7, where taxonomic information about each sequence is reported.
DOI: 10.5061/dryad.2fg10/3
title: Representation of ITSast metabarcode sequences across samples

description: A matrix of samples by sequences reporting the count of sequence reads for each ITSast sequence (i.e., Asteraceae-specific ITS marker) in each sample. Column names refer to the sequence identities in the Supporting Information Appendix Table S7, where taxonomic information about each sequence is reported.
DOI: 10.5061/dryad.2fg10/4
title: Representation of ITScyp metabarcode sequences across samples

description: A matrix of samples by sequences reporting the count of sequence reads for each ITScyp sequence (i.e., Cyperaceae-specific ITS marker) in each sample. Column names refer to the sequence identities in the Supporting Information Appendix Table S7, where taxonomic information about each sequence is reported.
DOI: 10.5061/dryad.2fg10/5
title: Dietary DNA metabarcode sequences in fasta format

description: All DNA metabarcode sequences in the final dataset are given in fasta format. Each sequence identifier corresponds to a sequence ID listed in the Supporting Information Appendix Table S3 (for trnL-P6 sequences) or Table S7 (for family-specific ITS markers; poa=Poaceae, ast=Asteraceae, and cyp=Cyperaceae)
DOI: 10.5061/dryad.334n3/1
title: Bemisia sampling information and biotype composition
DOI: 10.5061/dryad.334n3/2
title: TYLCV infection in samples of B. tabaci MEAM1 and MED collected from tomato in China in 2011
DOI: 10.5061/dryad.38f3n/1
title: Zambian great reed warbler field data

description: This file consists of data collected from great reed warblers at a Zambian study site. Information includes individual sex, spring migration departure dates, whether individuals sang in Zambia or not, average song duration, song interval, song rate, syllable repertoire size, the number of syllable repeats, scaled mass index, testosterone plasma concentration, the average proportion of home range overlap with other individuals, and the number of other individual home ranges they overlapped with.