cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.3j218/8
title: Performs_ABBA_BABA_on_populations

description: Perl script to calculate fDM and D statistics (two types of ABBABABA statistics) from a tab delimited input file.  Command line format is in comments in the script.
DOI: 10.5061/dryad.3j218/9
title: Performs_ABBA_BABA_on_populations_onlychrX

description: Script to calculate fDM and D statistic from chromosome X data in a tab delimited file.  Command line format is in comments in the script.
DOI: 10.5061/dryad.3j2q3/1
title: AP_camdata_2017

description: Raw data from observations of animal-borne video recorders deployed on African Penguins
DOI: 10.5061/dryad.3j2q3/2
title: CPUE_data

description: Catch-per-unit-effort data for models
DOI: 10.5061/dryad.3j2q3/3
title: AP_AVR_Rcode

description: R code for all analyses, tables and figures
DOI: 10.5061/dryad.3j2q3/4
title: Electronic supplementary material, video, Movie S1

description: Animal-borne-video footage showing the foraging behaviour of African penguins including an elevated school event, targeting of depolarised fish, group foraging and a bait-ball event.
DOI: 10.5061/dryad.45qj3/1
title: MalinDAMS
DOI: 10.5061/dryad.53924/1
title: Social and Vocal Database
DOI: 10.5061/dryad.53924/2
title: Repertoires
DOI: 10.5061/dryad.53924/3
title: Inter-observer reliability
DOI: 10.5061/dryad.5428h/3
title: Meta_analysis_uncontrolled
DOI: 10.5061/dryad.84655.1/11.1
title: Ml_T1

description: Mimulus luteus var. luteus inbred line EY7 - transcriptome T1 - complete annotated transcriptome
DOI: 10.5061/dryad.84655.1/12.1
title: Mg_T1_RPKM

description: M. guttatus inbred line CG - transcriptome T1 - RPKM expression report plus raw counts
DOI: 10.5061/dryad.84655.1/13.1
title: Ml_T1_RPKM

description: M. l. luteus inbred line EY7 - transcriptome T1 - RPKM expression report plus raw counts
DOI: 10.5061/dryad.8v5p3/2
title: Table S2

description: Table S2. Pairwise FST distances matrix (lower diagonal) and significant FST p-values (upper diagonal) for the 46 sampled localities of Ameivula ocellifera. Negative values in FST matrix were replaced with zeros to perform the analyses of genetic differentiation (more details in the “Genetic diversity and differentiation” section).
DOI: 10.5061/dryad.8v5p3/3
title: Table S4

description: Table S4. Climate and environmental values for each locality used to test genetic diversity in Ameivula ocellifera through linear regression or simultaneous autoregression analyses. Nucleotide diversity (π); climatic suitability from current and Last Glacial Maximum (LGM, 21 kyr) periods; isothermality (BIO3), temperature seasonality (BIO4), minimum temperature of coldest month (BIO6), annual mean temperature (BIO1), annual precipitation (BIO12), net primary productivity (NPP), actual evapotranspiration (AET), topographic complexity (TC), and distance from center of diffusion (DCD). Letters after BIO3, BIO4 and BIO6 variables represent current (C) and LGM (L) climate conditions.
DOI: 10.5061/dryad.8v5p3/4
title: Table S6

description: Table S6. Pairwise connectivity distance matrix for the 46 sampled localities of Ameivula ocellifera based on its current climatic suitability.
DOI: 10.5061/dryad.8v5p3/5
title: Table S7

description: Table S7. Pairwise connectivity distance matrix for the 46 sampled localities of Ameivula ocellifera based on its LGM climatic suitability.
DOI: 10.5061/dryad.8v5p3/6
title: Table S8

description: Table S8. Pairwise connectivity distance matrix for the 46 sampled localities of Ameivula ocellifera based on Caatinga main rivers.
DOI: 10.5061/dryad.8v5p3/7
title: Table S9

description: Table S9. Pairwise resistance distance matrix for the 46 sampled localities of Ameivula ocellifera based on Caatinga slope gradient.
DOI: 10.5061/dryad.8v5p3/8
title: Table S10

description: Table S10. Pairwise resistance distance matrix for the 46 sampled localities of Ameivula ocellifera based on Caatinga roughness gradient.
DOI: 10.5061/dryad.8v5p3/9
title: Script_GDM

description: R-script used to evaluate the contribution of environment and space in explaining genetic differentiation in Ameivula ocellifera using Generalized Dissimilarity Modelling (GDM).
DOI: 10.5061/dryad.ck3dh/10
title: PDB file for solvated CTX-M9 L48A:meropenem adduct

description: PDB file corresponding to simulation start state for L48A:meropenem acylenzyme.
DOI: 10.5061/dryad.ck3dh/11
title: PDB file for solvated CTX-M9 T165W:meropenem adduct

description: PDB file corresponding to simulation start state for CTX-M9 T165W meropenem acylenzyme
DOI: 10.5061/dryad.ck3dh/12
title: PDB file for solvated CTX-M9 S281A:meropenem adduct

description: PDB file corresponding to simulation start state for CTX-M9 S281A meropenem acylenzyme
DOI: 10.5061/dryad.ck3dh/13
title: Residue definitions for meropenem and cefotaxime acylenzymes

description: Modified GROMACS aminoacids.rtp file for AMBER99SB-ILDN force field containing residue definitions for serine-meropenem adducts and serine-cefotaxime adducts.
DOI: 10.5061/dryad.ck3dh/14
title: atom type file

description: aminoacids.atp in GROMACS format for modified AMBER99SB-ILDN parameters to describe acylenzymes.
DOI: 10.5061/dryad.ck3dh/15
title: ffnonbonded.itp

description: Nonbonded parameter file ffnonbonded.itp for modified AMBER99SB-ILDN to define acylenzymes.
DOI: 10.5061/dryad.ck3dh/7
title: CTX-M9 T165W:meropenem acylenzyme run input file

description: Gromacs TPR for CTX-M9 T165W in complex with meropenem
DOI: 10.5061/dryad.ck3dh/8
title: CTX-M9 S281A:meropenem acylenzyme run input file

description: Gromacs TPR for CTX-M9 S281A in complex with meropenem
DOI: 10.5061/dryad.ck3dh/9
title: PDB file for solvated CTX-M9:meropenem adduct

description: PDB file corresponding to simulation start state for CTX-M9:meropenem
DOI: 10.5061/dryad.dn58p/12
title: Data for Fst-Pst comparisons

description: [input file] This file contains the compiled data from Pst and Fst calculations in an organized format to do Fst-Pst comparisons.
DOI: 10.5061/dryad.dn58p/13
title: Input for analyses with SPAGeDi (Northern region)

description: [input file] This file is the file used to do SPAGeDi-analyses on populations from the northern region.
DOI: 10.5061/dryad.dn58p/14
title: Input for analyses with SPAGeDi (Southern region)

description: [input file] This file is the file used to do SPAGeDi-analyses on populations from the southern region.
DOI: 10.5061/dryad.dn58p/15
title: SPAGeDI output summary for Fi = 0.0

description: [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.0 (thus under Hardy-Weinberg equilibrium).
DOI: 10.5061/dryad.dn58p/16
title: SPAGeDI output summary for Fi = 0.2

description: [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.2.
DOI: 10.5061/dryad.dn58p/17
title: SPAGeDI output summary for Fi = 0.4

description: [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.4.
DOI: 10.5061/dryad.dn58p/18
title: SPAGeDI output summary for Fi = 0.6

description: [output file] This file summarizes the results of basin-wide and regional analyses with SPAGeDi under an inbreeding coefficient Fi = 0.6.
DOI: 10.5061/dryad.dn58p/8
title: Input for analyses with SPAGeDi (Basin-wide)

description: [input file] This file is the file used to do basin-wide analyses with SPAGeDi.
DOI: 10.5061/dryad.hd53q/1
title: data

description: Per: potential evaporation rate; Par: photosynthetically active radiation; Som: soil organic matter; Bd: bulk density; SWC: soil water content; Rii: relative interaction intensity.
DOI: 10.5061/dryad.kc260/1
title: Preoperative data of TKA patients
DOI: 10.5061/dryad.m2bq5/2
title: ValidationDataTriageDB_Upload2017

description: Validation data for this study. The data is already described in details by: Plesner LL, Iversen AKS, Langkjær S, Nielsen TL, Østervig R, Warming PE, et al. The formation and design of the TRIAGE study--baseline data on 6005 consecutive patients admitted to hospital from the emergency department. Scand J Trauma Resusc Emerg Med [Internet]. 2015 Jan [cited 2015 Dec 18];23:106. Available from: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=4667414&tool=pmcentrez&rendertype=abstract
DOI: 10.5061/dryad.n26r0/1
title: Swarming Data

description: Data on number of males swarming at each time point in each cage
DOI: 10.5061/dryad.n26r0/2
title: Swarming Maximum

description: Maximum number of males swarming per cage at any time point.
DOI: 10.5061/dryad.p1tf6/1
title: Schistosome CAA titers

description: This file contains CAA titers, schistosome status, season, age and capture information for buffalo involved in this publication.  Additional information is published under Dryad submission http://dx.doi.org/10.5061/dryad.q2m38.
DOI: 10.5061/dryad.p65dp/1
title: Supplementary Table S1

description: List of identified and quantified apoplast proteins collected from the apical meristem and vascular transition zone of winter wheat cv. Norstar crowns. Plants were treated for 0, 21, or 42 d at four degrees Celsius to induce a cold acclimation response.
DOI: 10.5061/dryad.p65dp/2
title: Supplementary Table S2

description: Apoplastic fluid malate dehydrogenase (MDH) specific activity in ‘Norstar’ shoot apical meristem (SAM) and vascular transition zone (VTZ) following 0, 21, or 42 d of cold acclimation. Means followed by the same letter within each column are not significantly different based on Fisher’s Least Significant Difference test (P &lt; 0.05).
DOI: 10.5061/dryad.p65dp/3
title: Supplementary Figures S1 and S2

description: For Supplementary Figure S1: Venn diagrams of 42/0 and 21/0 d apoplast cold responsive proteins in the shoot apical meristem (SAM) and vascular transition zone (VTZ).  For Supplementary Figure S2: Second derivative of absorbance spectra collected from the SAM and VTZ.
DOI: 10.5061/dryad.tk569/1
title: SuperMatrix 22taxa 978,795 amino acids

description: This is a phylip formatted file of 22 taxa consisting of 2,207 concatenated amino acid sequences from single copy orthologs.
DOI: 10.5061/dryad.tk569/3
title: All_2207_aligned_loci.tar

description: 2,207 aligned loci, amino acid sequences, in fasta format used to construct Supertree
DOI: 10.5061/dryad.tk569/4
title: 86tax.Align

description: 86 taxa including Affroraffaelea with 3 genes for most taxa: SSU, LSU, Btub.  I included an alignment of EF1alpha and RPB2 for ~23 genomes which would serve as an excellent resource for building primers for these genes in this group of fungi.
DOI: 10.5061/dryad.tk569/5
title: 86tax_8Partitions

description: Data partitions for 86 taxa alignment in RAxML format
DOI: 10.5061/dryad.tk569/6
title: Func_annotation.gff_Prot.fa_Transcripts.fa

description: Compressed protein, transcript, and general feature files for 15 annotated genomes.  12 sequenced this study, 3 previously published genomes.
DOI: 10.5061/dryad.tk569/7
title: Newick formatted whole genome tree from Figure 1

description: This is three in Figure 1, in newick format for use as a constraint tree in further analyses (86taxa alignment file).
DOI: 10.5061/dryad.v1k54/1
title: 1_20160505_WT_40CCCP_temp

description: Response of wild-type cells to the onset of 40 μM CCCP. Representative MTC1801 cell lineages are shown, with the mother cells oriented toward the bottom of the frame and the feeding/waste channel toward the top of the frame. This experiment corresponds to Movie 1.
DOI: 10.5061/dryad.v88q2/1
title: mimulus F2 data_finaldummies_YL
DOI: 10.5061/dryad.vj260/1
title: R-script (code) to Fig. 1A-B and Table A1

description: This file contains the R-script and code that can be used to generate Fig. 1A-B and Table A1 in the manuscript. These figures show geographic variation in species frequencies (Fig. 1A) and density-differences between population categories (Fig. 1B), as well as the statistical tests (ANOVA and GLM) for comparison of these categories. Data-file associated with this script is provided separately.
DOI: 10.5061/dryad.vj260/2
title: Geographic variation in species frequencies and densities

description: This file contains the data behind Fig. 1A-B and Table A1 in the manuscript. These figures show geographic variation in species frequencies (Fig. 1A) and density-differences between population categories (Fig. 1B). The script-file (R-code) associated with this datafile  is provided separately, and can be used to reproduce the statistical test associated with Table A1.
DOI: 10.5061/dryad.101h0/1
title: Mathematica notebook for population-based simulations

description: This notebook includes code to perform population-based simulations and plot their results, so as to reproduce figures 1 to 5 in the paper.
DOI: 10.5061/dryad.101h0/2
title: Simulations

description: This zip archive contains files to perform and analyze individual based simulations as done in the manuscript.
DOI: 10.5061/dryad.21s8j/1
title: Reproductive data of female Asian elephants

description: This data includes repeated height (cm) and weight (kg) measures of 150 individuals, identified by an ID number, with recorded age at measurement, and reproductive data. This reproductive data includes reproductive status at the age of measurement, and the number of calves born to a female and survived to the age of 5. This also includes their 5 year birth cohort, birth origin (1=wild caught, 0=captive born), and age at capture if wild caught (captive born age at capture=0)
DOI: 10.5061/dryad.21s8j/2
title: Survival of female Asian elephant

description: This data includes height (cm) measures of 104 female Asian elephants aged 20-50, along with their censorship status (1=dead, 0=alive), and their age at censorship or death. This also includes their reproductive status, their birth origin (1=wild caught, 0=captive born), and their age at capture if they are wild caught (captive born age at capture= 0).
DOI: 10.5061/dryad.2jj06/2
title: Svensson-IRD-reproduction

description: Treatment effect on reproductive success.

Species: sand goby Pomatoschistus minutus.

Three localities were used: Bökevik, a bay near Sven Lovén Centre for Marine Infrastructure, Kristineberg (Skagerrak, 58°14'55"N 11°26'51"E, salinity 16-35 PSU), Sandviken, a bay near the town of Västervik (Baltic Sea proper, 57°44'15"N 16°42'29"E, salinity 6-7.5 PSU) and the bays Svartvik and Byviken near the town of Härnösand (Gulf of Bothnia, 62°33'08"N 17°52'00"E and 62°35'22"N 17°54'38"E, salinity 3-5.5 PSU).

File: Svensson-IRD-reproduction.
ID: The authors’ identification code for the replicate.
Female treatment: Resident 6 PSU for Harnosand and Vastervik, 32 PSU for Kristineberg, immigrant 32 PSU for Harnosand and Vastervik, 6 PSU for Kristineberg.
Male treatment: Resident 6 PSU for Harnosand and Vastervik, 32 PSU for Kristineberg, immigrant 32 PSU for Harnosand and Vastervik, 6 PSU for Kristineberg.
Male population: Harnosand (Härnösand), Vastervik (Västervik) and Kristineberg.
Female population: Harnosand (Härnösand), Vastervik (Västervik) and Kristineberg. Vastervik and Harnosand pooled.
Female population not pooled: Harnosand (Härnösand), Vastervik (Västervik) and Kristineberg. Vastervik and Harnosand not pooled.
Male in treatment: Weeks or months. The males had been in treatment at two different lengths.
Spawned egg area cm2: The area (cm2) of the original egg clutch.
Final egg area cm2: The area (cm2) of the final egg clutch.
Days to clutch loss: The number of days until the clutch was lost (if lost).
DOI: 10.5061/dryad.2jj06/3
title: Svensson-IRD-sperm

description: Treatment effect on sperm motility.

Species: sand goby Pomatoschistus minutus.

Two localities were used: Bökevik, a bay near Sven Lovén Centre for Marine Infrastructure, Kristineberg (Skagerrak, 58°14'55"N 11°26'51"E, salinity 16-35 PSU) and the bays Svartvik and Byviken near the town of Härnösand (Gulf of Bothnia, 62°33'08"N 17°52'00"E and 62°35'22"N 17°54'38"E, salinity 3-5.5 PSU).

File: Svensson-IRD-sperm.
Male origin: Harnosand (Härnösand) and Kristineberg.
ID: The authors’ identification number of the males.
Sperm motility 31 PSU NaCl: Proportion of motile sperm in 31 PSU NaCl (square-root arcsine transformed).
Sperm motility 6 PSU NaCl: Proportion of motile sperm in 6 PSU NaCl (square-root arcsine transformed).
DOI: 10.5061/dryad.2ng06/1
title: Bottom-up Top-down Meta-analysis data

description: Data used in the meta-analysis.
DOI: 10.5061/dryad.3j218/16
title: nonrecal_filtered_chr7_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr7
DOI: 10.5061/dryad.3j218/17
title: nonrecal_filtered_chr8_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr8
DOI: 10.5061/dryad.3j218/18
title: nonrecal_filtered_chr9_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr9
DOI: 10.5061/dryad.3j218/19
title: nonrecal_filtered_chr10_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr10
DOI: 10.5061/dryad.3j218/20
title: nonrecal_filtered_chr11_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr11
DOI: 10.5061/dryad.3j218/21
title: nonrecal_filtered_chr12_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr12
DOI: 10.5061/dryad.3j218/22
title: nonrecal_filtered_chr13_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr13
DOI: 10.5061/dryad.3j218/23
title: nonrecal_filtered_chr14_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr14
DOI: 10.5061/dryad.3j218/24
title: nonrecal_filtered_chr15_final.vcf.gz_norepeat.vcf

description: HiSeqX aDNA vcf, repeats removed, chr15
DOI: 10.5061/dryad.4t13k/1
title: all sequences

description: DNA Barcoding, invasive plants, ITS, ITS2, matK
DOI: 10.5061/dryad.4t13k/2
title: tree files
DOI: 10.5061/dryad.53kq0
title: Dryad Item 10.5061/DRYAD.53KQ0
DOI: 10.5061/dryad.5f876/1
title: Devon - Pit 1

description: Plant species presence/absence from Pit1 on Devon Island Nunavut.The site was on the Truelove Lowland, a 43 km2 polar oasis on Devon Island, Nunavut. Sample plots were located on dry beach ridges and had plant communities dominated by low growing perennials such as Salix arctica, Dryas integrifolia and Carex spp.The rectangular plot (90 x 220 cm) was surveyed in July 2008. The plot was divided into contiguous 10 cm by 10 cm quadrats and species presence in each quadrat was recorded to produce a stem map precise to the nearest 10 cm. Variables PX and PY record the coordinates of the center of each 10cm by 10cm subquadrat. Variable species is a species code drawn from the genus and species names of the vascular plants present. Citation for this dataset is: Lamb, E. G. et al. 2016. A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron. - Plant Soil 404: 361-372.
DOI: 10.5061/dryad.5f876/2
title: Devon - Pit 2

description: Plant species presence/absence from Pit2 on Devon Island Nunavut.The site was on the Truelove Lowland, a 43 km2 polar oasis on Devon Island, Nunavut. Sample plots were located on dry beach ridges and had plant communities dominated by low growing perennials such as Salix arctica, Dryas integrifolia and Carex spp.The rectangular plot (90 x 210 cm) was surveyed in July 2008. The plot was divided into contiguous 10 cm by 10 cm quadrats and species presence in each quadrat was recorded to produce a stem map precise to the nearest 10 cm. Variables PX and PY record the coordinates of the center of each 10cm by 10cm subquadrat. Variable species is a species code drawn from the genus and species names of the vascular plants present. Citation for this dataset is: Lamb, E. G. et al. 2016. A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron. - Plant Soil 404: 361-372.
DOI: 10.5061/dryad.5f876/3
title: Devon - Pit 3

description: Plant species presence/absence from Pit3 on Devon Island Nunavut.The site was on the Truelove Lowland, a 43 km2 polar oasis on Devon Island, Nunavut. Sample plots were located on dry beach ridges and had plant communities dominated by low growing perennials such as Salix arctica, Dryas integrifolia and Carex spp.The rectangular plot (90 x 200 cm) was surveyed in July 2008. The plot was divided into contiguous 10 cm by 10 cm quadrats and species presence in each quadrat was recorded to produce a stem map precise to the nearest 10 cm. Variables PX and PY record the coordinates of the center of each 10cm by 10cm subquadrat. Variable species is a species code drawn from the genus and species names of the vascular plants present. Citation for this dataset is: Lamb, E. G. et al. 2016. A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron. - Plant Soil 404: 361-372.
DOI: 10.5061/dryad.5f876/4
title: Devon - Pit 4

description: Plant species presence/absence from Pit4 on Devon Island Nunavut.The site was on the Truelove Lowland, a 43 km2 polar oasis on Devon Island, Nunavut. Sample plots were located on dry beach ridges and had plant communities dominated by low growing perennials such as Salix arctica, Dryas integrifolia and Carex spp.The rectangular plot (90 x 220 cm) was surveyed in July 2008. The plot was divided into contiguous 10 cm by 10 cm quadrats and species presence in each quadrat was recorded to produce a stem map precise to the nearest 10 cm. Variables PX and PY record the coordinates of the center of each 10cm by 10cm subquadrat. Variable species is a species code drawn from the genus and species names of the vascular plants present. Citation for this dataset is: Lamb, E. G. et al. 2016. A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron. - Plant Soil 404: 361-372.
DOI: 10.5061/dryad.5f876/5
title: Devon - Pit 5

description: Plant species presence/absence from Pit5 on Devon Island Nunavut.The site was on the Truelove Lowland, a 43 km2 polar oasis on Devon Island, Nunavut. Sample plots were located on dry beach ridges and had plant communities dominated by low growing perennials such as Salix arctica, Dryas integrifolia and Carex spp.The rectangular plot (90 x 200 cm) was surveyed in July 2008. The plot was divided into contiguous 10 cm by 10 cm quadrats and species presence in each quadrat was recorded to produce a stem map precise to the nearest 10 cm. Variables PX and PY record the coordinates of the center of each 10cm by 10cm subquadrat. Variable species is a species code drawn from the genus and species names of the vascular plants present. Citation for this dataset is: Lamb, E. G. et al. 2016. A high-throughput belowground plant diversity assay using next-generation sequencing of the trnL intron. - Plant Soil 404: 361-372.
DOI: 10.5061/dryad.5f876/6
title: KinsellaMap

description: Plant species coordinates from a quadrat in a  rough fescue short grass prairie located at the Roy Berg Kinsella Research Ranch, in Kinsella, Alberta, Canada (53°50’ N, 111°33’ W). The site is in the Aspen Parkland ecoregion and is comprised of a mosaic of trembling aspen (Populus tremuloides) stands and short-grass prairie. The plant community is dominated by C3 grasses including Festuca hallii, Hesperostipa curtiseta and Poa pratensis and includes more than 40 forb species of varying abundance. The site was historically winter-grazed by bison, and had been last grazed by cattle five years prior to sampling. 

In the summer of 2005, a single haphazardly placed 3 x 3 metre plot was divided into 36 0.5 x 0.5 m grid cells. Every live stem was identified to species and mapped to the nearest centimetre providing a detailed map of the distribution of 1889 stems from 29 species. Variables PX and PY record the coordinates. Variable species is a species code drawn from the genus and species names of the vascular plants present.