cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19213038.v1
title: Supplementary Material for: A Systematic Review and Meta-Analysis of Comparison of Outcomes of Robot-Assisted versus Open Partial Nephrectomy in Clinical T1 Renal Cell Carcinoma Patients

description: <b><i>Introduction:</i></b> Robot-assisted partial nephrectomy (RAPN) has been increasingly used for renal cell carcinoma in recent years. But the advantages of RARN over open partial nephrectomy (OPN) are still controversial. <b><i>Methods:</i></b> We searched the articles between 1997 and 2021 in PubMed, Web of Science, Cochrane Library, and EMbase databases. The parameters were perioperative outcomes including operating time (OT), warm ischemic time (WIT), estimated blood loss (EBL), positive surgical margin (PSM), preoperative and postoperative estimated glomerular filtration rate (eGFR), length of stay (LOS), and intraoperative and postoperative complications. Stata 13.0 software was used for the meta-analysis. <b><i>Results:</i></b> Seven studies with 2,646 patients (1,285 in RAPN vs. 1,361 in OPN) were included in the analysis. There were no significant differences in OT (WMD [95% confidence interval (CI)]: 0.14 [−0.33, 0.61], <i>p</i> = 0.570); WIT (WMD [95% CI]:0.28 [−0.13, 0.69], <i>p</i> = 0.187); PSM (odds ratio [OR] [95% CI]: 1.04 [0.37, 2.94], <i>p</i> = 0.944); preoperative eGFR (OR [95% CI]: 0.11 [−0.01, 0.23], <i>p</i> = 0.071); postoperative eGFR (OR [95% CI]: −0.11 [0.27, 0.04], <i>p</i> = 0.159); and intraoperative complications (OR [95% CI]: 0.13 [0.02, 1.04], <i>p</i> = 0.055) between 2 groups. But there were still less EBL (WMD [95% CI]: −0.67 [−1.07, −0.28], <i>p</i> = 0.001), shorter LOS (WMD [95% CI]: −1.09 [−1.86, −0.32], <i>p</i> = 0.005) and fewer postoperative complications (OR [95% CI]: 0.51 [0.38, 0.68], <i>p</i> = 0.000). <b><i>Conclusions:</i></b> Compared with OPN, RAPN appears to achieve partly similar short-term functional outcomes. Meanwhile, some results are inconsistent with previous studies which seem to show that tumor type is also an important factor in comparison between RAPN and OPN, but the analysis is not carried out due to lack of complete data. Therefore, more high-quality random controlled trials are acquired.
DOI: 10.6084/m9.figshare.28501880.v1
title: Database for kraken2 KpSC plasmid classifier

description: Plasmid-free chromosomal sequences and complete plasmid sequences used for constructing a Kraken2 database for the <i>Klebsiella pneumoniae</i> species complex (KpSC). This dataset contains 2,487 complete KpSC chromosomal sequences, representing all seven KpSC taxa, and 30,095 complete <i>Enterobacteriaceae</i> plasmid sequences. These can be found in the <b>kraken2-sequences.tar.gz </b>file.The original database was developed by Gomi <i>et al., </i>2021, which has been expanded to include more chromosomal and plasmid sequences using a similar inclusion criteria. Accessions and metadata for all sequences in this database are available in the <b>kraken2-classifier-metadata.xlsx</b> file. This database was designed to be used with the kraken2 software developed by Wood <i>et al., </i>2019, with example code shown in the <b>build-kraken2-database.sh</b> file.<b>References:</b>Gomi, R., Wyres, K.L., and Holt, K.E. (2021). Detection of plasmid contigs in draft genome assemblies using customized Kraken databases. Microb Genom <i>7</i>. 10.1099/mgen.0.000550.Wood, D.E., Lu, J., and Langmead, B. (2019). Improved metagenomic analysis with Kraken 2. Genome Biol. <i>20</i>, 257.<br>
DOI: 10.60893/figshare.apl.28660148.v1
title: Supplementary Material

description: Supplementary Material
DOI: 10.17632/zwst97xy5n
title: Effect of Food Affordability on Healthy Life: Survey data from Rural and Urban People of Bangladesh

description: There is a noticeable difference in eating patterns between individuals living in rural and urban regions. The purpose of the dataset is to compare the dietary patterns of people living in rural and urban areas in terms of health. 
In 2022, about 140 data were collected from people in Bangladesh's major cities through offline and online surveys.
DOI: 10.6084/m9.figshare.27180927.v1
title: <b>X-CircuiT and Conventional Exercise in Home-Based Cardiac Rehabilitation for Patients with Coronary Artery Disease and Risk Factors: A Randomized Controlled Non-Inferiority Trial</b>

description: This dataset underpins the research on<b> </b>X-CircuiT and Conventional Exercise in Home-Based Cardiac Rehabilitation for Patients with Coronary Artery Disease and Risk Factors: A Randomized Controlled Non-Inferiority Trial.
DOI: 10.6084/m9.figshare.24133083.v1
title: Supplementary Material for: Artificial Intelligence for Detection of Dementia Using Motions Data: A Scoping Review

description: Background: Dementia is a neurodegenerative disease resulting in the loss of cognitive and psychological functions. Artificial Intelligence (AI) may help in detection and screening of dementia; however, little is known in this area. Summary: The objective of this study is to identify and evaluate artificial intelligence interventions for detection of dementia using motion data. The review followed the Joanna Briggs Institute framework and adhered to the Preferred Reporting Items for Systematic reviews and Meta-Analyses extension for Scoping Reviews (PRISMA-ScR) checklist for reporting the results. Patients with dementia and other neurodegenerative diseases were included. Studies were excluded if they focused on diagnosing Parkinson’s or Huntington’s disease. A comprehensive search was conducted across five databases. AI interventions, which were implemented or tested in health care settings, were included. Two independent reviewers screened the abstracts, titles, and then full texts. The reference lists of included studies were also screened. Articles in English from date of inception to September 2020 were included. Any outcome related to patients, health care providers and the health care system. After removing duplicates, 2,632 articles were obtained. After title and abstract screening and full-text screening, 839 articles were included. The authors categorized the included papers into six categories and data synthesis was performed on 20 papers from the sensors tracking movement category. Key Messages: We presented evidence of AI systems being employed in the detection of dementia, showcasing the promising potential of motion tracking within this domain. Although much progress has been made in this field recently, there remain notable research gaps that require further exploration and investigation.
DOI: 10.6084/m9.figshare.28655879.v1
title: <b>Data for article on "Spatially Varying Associations between Community-Level Sociodemographic Predictors and Cumulative COVID-19 Outcomes in New York Cit</b>y"

description: Data for the paper "<b>Spatially Varying Associations between Community-Level Sociodemographic Predictors and Cumulative COVID-19 Outcomes in New York Cit</b>y" is shared here as an Excel workbook, which incudes a data dictionary.
DOI: 10.6084/m9.figshare.3568599.v1
title: Appendix A. Hierarchy Revisions Working Group.

description: Hierarchy Revisions Working Group.
DOI: 10.6084/m9.figshare.17701151.v1
title: EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces

description: EEG dataset for subject 11
DOI: 10.6084/m9.figshare.28381595.v1
title: The topography of infratentorial lesions in depression and anxiety in multiple sclerosis

description: The study examines the association between infratentorial lesions and depression or anxiety, focusing on three regions of interest: raphe nuclei, locus coeruleus, and cerebellar lobule VIIA. This item includes:Dataset with clinical, demographic, neuropsychological and radiological data for each patient Statistical analyses results
DOI: 10.17632/bvnxchnhsz
title: Enhancement and Research of Ourém’s Cultural Heritage. (PIA project - DGPC, 2023)

description: The PIA acronym project presents a set of archaeological sites recognized for the first time in 2023, together with others that have been confirmed on the ground. This data may be useful for local Territory management, environmental impact studies or construction monitoring. In shared links you will be able to see some published articles related to archaeological sites or work developed.
DOI: 10.6084/m9.figshare.23742207.v2
title: Regional AMS databases

description: Databases containing compiled regional database of AMS data for the French Massif Central and the Caladonian Newer Granites of Scotland and Ireland in appendixes A and B respectively.
DOI: 10.6084/m9.figshare.28828262.v1
title: Electromagnetic-Gravitational Feedback: The True Driver of Cosmic Expansion"

description: This paper proposes a new physical mechanism for cosmic expansion, eliminating the need for "dark energy" within the ΛCDM model. By reframing cosmic dynamics through established electromagnetic principles, it challenges conventional cosmology at its foundation. The framework presented is mathematically grounded, testable through cosmic microwave background (CMB) anomalies, large-scale structure observations, and laboratory experiments. This work redefines cosmic acceleration as an emergent property of known physics, offering a paradigm shift for 21st-century astrophysics.<br>
DOI: 10.6084/m9.figshare.12944495.v1
title: [2020-6-17] Beaver Dams Drone Orthomosaic, Digital Surface Model, and Processing Report

description: This is the drone orthomosaic, digital surface model (DSM), and PhotoScan-generated report for the June 17, 2020 sampling date for the Evans et al. Sawyer Mill dam removal study. This data is for the beaver dam study area on the Bellamy River in Dover, NH, USA. A DJI Phantom 3 Professional small unmanned aerial system was used to collect the aerial imagery. The imagery was processed in Agisoft PhotoScan Professional. A Topcon Hiper Lite+ was used to collect the survey data. <br>The products' XY is in WGS 84, and the vertical datum corresponds to NAVD88 in meters. Please see Alexandra's dissertation (University of New Hampshire, 2021) for additional information on the drone products.<br><br>These materials were made using resources from an NSF EPSCoR funded project “RII Track-2 FEC: Strengthening the scientific basis for decision-making about dams: Multi-scale, coupled-systems research on ecological, social, and economic trade-offs” (a.k.a. "Future of Dams"). Support for this project is provided by the National Science Foundation’s Research Infrastructure Improvement NSF #IIA-1539071. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
DOI: 10.6084/m9.figshare.28375385.v2
title: <b>Data on ethnobotanical use of botanical resources in Nigeria</b>

description: The researchers used the Web of Science, Scopus, and Dimension as dataset sources to gather ethnobotanical literature about plant conservation in Nigeria. Studies that took place in Nigeria between January 1, 1964, and January, 2025, scientific papers written in English, and studies that looked at ethnobotanical uses, phytochemistry, and the conservation status of plant species in Nigeria were all considered.
DOI: 10.17632/gjm6kj97tz
title:  An Evidence-Based Approach for Malignancy Associated and Paraneoplastic Generalized Granuloma Annulare

description: PRISMA Supplemental Figure 1 shows how records were identified and analyzed
Supplemental Table 1 shows clinical background of patients included in analysis
Supplemental Table 2 shows level of evidence, study type, number of studies, and number of patients analyzed
DOI: 10.6084/m9.figshare.27961191.v1
title: FLCCR is a fluorescent reporter system that quantifies the duration of different cell cycle phases at the single-cell level in fission yeast - Single Cell data quantification

description: FLCCR is a fluorescent reporter system that quantifies the duration of different cell cycle phases at the single-cell level in fission yeast - Single Cell data quantification
DOI: 10.17632/z9knmny56p
title: New version of Hyper-Fractal Analysis application for estimating the fuzzy fractal dimension of hyperspectral satellite ocean color images

description: In this work we present a new version of the Hyper-Fractal Analysis C# .Net application for estimating the fuzzy fractal dimension of hyperspectral images. As an example, we also present some initial results on 116D algal images obtained from the HYPSO-1 satellite.
DOI: 10.6084/m9.figshare.19609515.v1
title: vWF_TAVI_data.xlsx

description: 143 patients with severe AS undergoing TAVI were included in the study. vWF function was assessed at baseline, 6 and 24 hours after TAVI. BAV morphology is a strong predictor for AVWS in severe AS. TAVI restores vWF function in most patients with severe AS independently of AS phenotype and valve morphology.
DOI: 10.6084/m9.figshare.21936741.v1
title: Surgical Treatment of Constrictive Pericarditis

description: ABSTRACT Introduction: The mainstay of the treatment of constrictive pericarditis is pericardiectomy. However, surgery is associated with high early morbidity and mortality and low long-term survival. The aim of this study is to describe our series of pericardiectomies performed over 30 years. Methods: A descriptive, observational, and retrospective analysis of all pericardiectomies performed at the Institute of Cardiology and Cardiovascular Surgery of the Favaloro Foundation was performed. Results: A total of 45 patients underwent pericardiectomy between June 1992 and June 2022, mean age was 52 years (standard deviation ± 13.9 years), and 73.3% were men. Idiopathic constrictive pericarditis was the most prevalent (46.6%). The variables significantly associated with prolonged hospitalization were preoperative advanced functional class (incidence of 38.4%, P&lt;0.04), persistent pleural effusion (incidence of 81.8%, P&lt;0.01), and although there was no statistical significance with the use of cardiopulmonary bypass, a trend in this association is evident (P&lt;0.07). We found that 100% of the patients with an onset of symptoms greater than six months had a prolonged hospital stay. In-hospital mortality was 6.6%, and 30-day mortality was 8.8%. The preserved functional class is 17 times more likely to improve their symptomatology after pericardiectomy (odds ratio 17, 95% confidence interval 2.66-71; P&lt;0.05). Conclusion: Advanced functional class at the time of pericardiectomy is the variable most strongly associated with mortality and prolonged hospitalization. Onset of the symptoms greater than six months is also a poor prognostic factor mainly associated with prolonged hospitalization; based on these data, we strongly support the recommendation of early intervention.
DOI: 10.6084/m9.figshare.22132691.v4
title: High-Resolution Earthquake Catalog and Velocity Model Reveal Detailed Seismogenic Structures and Earthquake Mechanisms in Changning Area, Southwestern Sichuan Basin, China

description: Event waveforms data that detected in Changning area, China from July 6, 2019 to August 21, 2019. Folders in all_event compressed files are all named by event occurrence time. The earthquake catalog (tomoDD_mag.dat) and Velocity models are also included.
DOI: 10.6084/m9.figshare.3364315.v1
title: Article Variables.sav

description: Relevant data supporting the findings of the manuscript "Pain treatment for nursing home residents differs according to cognitive state - a cross-sectional study.<br><br>File type: SPSS<br>
DOI: 10.6084/m9.figshare.28566185.v1
title: Measuring Urban Sanitation and Empowerment (MUSE) dataset | men

description: <b>Project</b> - The Measuring Urban Sanitation and Empowerment (MUSE) project developed and validated the Agency, Resources, and Institutional Structures for Sanitation-related Empowerment (ARISE) Scales to assess 16 sub-domains of women's sanitation-related empowerment.<b>Dataset</b> -<b> </b>Survey data were collected among adult men in Kampala, Uganda in 2022.These data were collected to compare empowerment responses between women and men participants. Men's data were not used in the validation of the ARISE Scales. The men's survey was specific to men, though many items were the same as the women's survey (see data dictionary in FigShare Collection).
DOI: 10.6084/m9.figshare.7525184.v5
title: Vocalization Annotation Formats Dataset

description: Moved here to fix url:https://figshare.com/articles/Vocalization_Annotation_Formats_Dataset/8046920<br>
DOI: 10.6084/m9.figshare.8319695.v1
title: Supplementary Material for: GFR-Specific versus GFR-Agnostic Cutoffs for Parathyroid Hormone and Fibroblast Growth Factor-23 in Advanced Chronic Kidney Disease

description: <b><i>Background:</i></b> In the majority of patients with advanced chronic kidney disease (CKD), values of parathyroid hormone (PTH1–84) and fibroblast growth factor 23 (FGF-23) exceed the normal reference range, potentially as an appropriate adaptation to reduced glomerular filtration rate (GFR). We tested whether GFR-specific cutoffs for PTH1–84 and FGF-23 could better identify patients with inappropriately high PTH1–84 and FGF-23 for their degree of CKD and thereby improve prognostication of clinical outcomes compared to a uniform threshold. <b><i>Methods:</i></b> Prospective pan-Canadian cohort of 1,812 patients with mean estimated GFR (eGFR) 28.9 mL/min/1.73 m<sup>2</sup> followed for a median of 52 months. Repeated log-rank tests were used to identify optimal cutoffs for PTH1–84 and FGF-23 within eGFR strata (&lt;20, 20–29 and ≥30 mL/min/1.73 m<sup>2</sup>) that maximally differentiated high- and low-risk populations for (1) cardiovascular (CV) events (fatal or nonfatal myocardial infarction, coronary revascularization, stroke, heart failure) and (2) renal events (initiation of chronic renal replacement therapy). In multivariable models, we examined the association between ­GFR-specific cutoffs and outcomes and compared their added prognostic value to existing uniform thresholds. <b><i>Results:</i></b> Risk-based cutoffs for PTH1–84 and FGF-23 increased in a graded fashion with decreasing eGFR. Among patients with eGFR &lt;20 mL/min/1.73 m<sup>2</sup>, CV risk-based cutoffs for PTH1–84 and FGF-23 were 3.4 and 5.5 times the upper limit of normal, respectively, and reclassified 31.9 and 35.1% of patients when added to a multivariable base model for CV events. In contrast, the addition of PTH1–84 and FGF-23 to the base model using uniform cutoffs failed to reclassify such patients. Similar findings were demonstrated for renal outcomes. <b><i>Conclusion:</i></b> GFR-specific risk-based cutoffs for PTH1–84 and FGF-23 may facilitate more meaningful risk stratification in advanced CKD than current GFR-agnostic reference ranges derived from healthy adults. This may be most applicable in those with severely reduced GFR.
DOI: 10.6084/m9.figshare.22338193.v1
title: MicroRNA and gut microbiome of soybean pod-sucking stinkbug Riptortus pedestris (Hemiptera: Alydidae)

description: Data set of the stinkbug Riptortus pedestris.
DOI: 10.6084/m9.figshare.28765064.v1
title: Adult male fly hemolymph Lipidomics Data on Normal (ND) and High Sugar (HSD) for 14 days.

description: Frozen hemolymph samples from ND and HSD-fed flies were sent to the Northwest Metabolomics Research Center (NW-MRC) for targeted quantitative lipid profiling using the Sciex 5500 Lipidyzer as per methods established by NW-MRC<sup>120</sup>. The materials used include LC-MS grade methanol, dichloromethane, and ammonium acetate, all sourced from Fisher Scientific (Pittsburgh, PA). HPLC grade 1-propanol was obtained from Sigma-Aldrich (Saint Louis, MO). Milli-Q water was produced using an in-house Ultrapure Water System by EMD Millipore (Billerica, MA). The Lipidyzer isotope-labeled internal standards mixture, which contained 54 isotopes from 13 different lipid classes, was acquired from Sciex (Framingham, MA). HCER and LCER were not detected in <i>Drosophila </i>hemolymph, so we report 11 different lipid classes.
DOI: 10.6084/m9.figshare.1189286.v1
title: S9 sandstone

description: Micro-CT image of S9 sandstone and extracted networks (Dong and Blunt, 2009, DOI: http://dx.doi.org/10.1103/PhysRevE.80.036307) The image can be visualised by opening the Nrrd header file S9.nhdr in visualization software such as Paraview or ImageJ (http://fiji.sc/Fiji), You can also open the S9.nhdr file in a text editor to see the image and voxel sizes. See the link provided for further information.
DOI: 10.6084/m9.figshare.13055627.v1
title: Supplementary Material for: Falls and Fall-Related Consequences among Older People Living in Long-Term Care Facilities in a Megacity of China

description: <b><i>Introduction:</i></b> Falls are currently the top safety problem in long-term care facilities (LTCFs) in China. Due to the increasing number of residents living in LTCFs, more evidence is needed to give a foundation for fall prevention. <b><i>Objective:</i></b> This study aimed to explore the epidemiological characteristics of falls in LTCFs in central Shanghai. <b><i>Methods:</i></b> The study was conducted in 21 LTCFs in a central district in Shanghai, with a capacity of 3,065 residents. A two-stage sampling method was applied in participant recruitment. Falls were recorded by LTCF staff over a 12-month period. Details of falls were obtained by face-to-face interviews. The χ<sup>2</sup> test was used in data analyses. <b><i>Results:</i></b> The incidence of falls was 13.5%; 64.0% falls resulted in injuries, with 32.0% involving fractures. Women had a significantly higher incidence of injurious falls than men (χ<sup>2</sup> = 4.066, <i>p</i> = 0.044). Residents aged 80–89 years or in level 1 care had the highest incidence of falls with severe consequences. The incidence of falls was significantly higher at small- or medium-sized LTCFs, public LTCFs, and LTCFs with higher environmental risk levels compared to their counterparts. Most falls occurred when walking on a flat floor (28.9%) and rising up or sitting down (24.0%); 40.9% occurred during the night. Of those injured, 54.8% were treated in hospitals, and only 53.7% completely recovered. <b><i>Conclusions:</i></b> Though the average incidence of falls in LTCFs in Shanghai was relatively low, great variation was observed between LTCFs, and severe consequences occurred frequently. Fall prevention programmes should be evidence-based with applicable devices and individualized care services and supports. The roles of personal and institutional factors on falls warrant further study.
DOI: 10.6084/m9.figshare.14839653.v1
title: LeaderboardSleep

description: LeaderboardSleep Source Training data age group 1 with label Sleep_target Example data with label, 5 subjects from age group 2 Testing Age group 2, Data that you need to predict, without label
DOI: 10.6084/m9.figshare.28730102.v1
title: Disturbance-Mediated Shifts in Mammalian Activity Rhythms: A Case Study from a Nature Reserve in Northern China

description: This dataset includes camera trap records from the Labagoumen Nature Reserve, Beijing, along with raw data,row images and the corresponding verifiable R code for Figures 1to 5 in this study.
DOI: 10.6084/m9.figshare.862972.v2
title: 50 General Knowledge Questions and their answers

description: 50 general knowledge questions in natural language, plus the sound and complete answers for each of these questions.
DOI: 10.6084/m9.figshare.9578174.v2
title: RT Modelling Output SEDs

description: Output SEDs and scripts used to generate SEDs from the Hyperion model output.
DOI: 10.6084/m9.figshare.16677373.v1
title: Multiple actin regulatory proteins localize to phagocytic teeth (images for Figure 5 and Figure 5 Supplement)

description: RAW macrophages were transfected with fluorescently tagged actin binding proteins and challenged to ingest DAAMPs (11 mm, 1.4 kPa) functionalized with IgG and AF647-Cadaverine to assess localization to actin teeth (yellow arrowheads). Images were collected by laser scanning confocal microscopy.