cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9n8r33bzkj
title: Automated classification of hidradenitis suppurativa disease severity by convolutional neural network analyses using clinical images – a prospective study, Supplements

description: Supplemental figures for Manuscript "Automated classification of hidradenitis suppurativa disease severity by convolutional neural network analyses using clinical images – a prospective study."

Figure legends:

Supplemental Fig 1. Individual Typology Angle (ITA°) map. According to their ITA°, individuals were assigned to one of seven skin classification categories. To see if the difference between actual Fitzpatrick (Expert) and ITA phototype (Scarletred®Vision) are significant, a Mann Whitney U Test was conducted (n=149, significance level 5%). The null hypothesis for this test states that there will be no significant difference between the two groups. The test resulted in a p-value of ≈ 0.09 (> 0.05). Therefore, there is no significant difference between the two groups which supports Scarletred®Vision robustness to compute the ITA° related phototype. 

Supplemental Fig 2. Images were signal augmented and analyzed by measuring SEV*, L*, +a* and +b* values. Clear trends were observed in the SEV*_meandt-refdt and +a*_meandt-refdt (dark green squares, p<0.001), indicating the importance of the SEV* for classification and lesion detection also in this study 13.

Supplemental Fig 3. The CNN predicted score aligned with changes of the IHS4, reflecting HS specific dynamics.
DOI: 10.17632/gnrhxr6c43
title: Hedge fund managers social media interactions

description: 115 accounts of active hedge fund managers with over 5000 retweets, 1000 likes, and 1000 responses are found using Twitter's search tool. Then, between January 2019 and October 2021, roughly 660,000 tweets were crawled using the Twitter APIv2. Using just English-language tweets, 556,753 tweets remained and were utilized for further analysis.
DOI: 10.17632/xk562w9hm6
title: Oregano supplementation in laying hens

description: This study aimed to explore the effects of oregano oil supplementation on performance, blood lipid profile, antioxidant capacity, and egg quality in Hy-line Brown layers during the peak laying phase
DOI: 10.6084/m9.figshare.20418384.v2
title: Rethinking Degradation: Radiograph Super-Resolution via AID-SRGAN (Pre-trained Model)

description: MICCAI 2022; AID-SRGAN
DOI: 10.6084/m9.figshare.24160752.v1
title: Data in the revised paper "Determination of the Eddy Diffusion in the Venus Clouds from the VeRa Sulfuric Acid Observations"

description: This is the data in the revised paper "Determination of the Eddy Diffusion in the Venus Clouds from the VeRa Sulfuric Acid Observations"
DOI: 10.6084/m9.figshare.27329979.v1
title: Raw data

description: 16-day temporal resolution Normalized Difference Vegetation Index (NDVI) dataset obtained from MOD13C1V6 product at 0.05° spatial resolution for 2000-2020 period;MOD44B Vegetation Continuous Fields Yearly product aggregated into a 0.05° spatial resolution.
DOI: 10.6084/m9.figshare.28102670.v1
title: SkullGAN Filtered Synthetic Skulls

description: To address the challenges of limited and heterogeneous skull CT data for training deep learning models in transcranial ultrasound (TUS) applications, we developed SkullGAN, a generative adversarial network designed to generate high-quality synthetic skull CT slices. SkullGAN leverages real CT data from 38 healthy subjects to produce synthetic images that closely mimic the radiological features of real skulls, as evaluated through skull density ratio, mean thickness, mean intensity, t-SNE analysis, a Fréchet inception distance (FID) score of 49, and a visual Turing test (VTT) with expert radiologists achieving 60% mean accuracy in distinguishing real from synthetic images. These synthetic skull slices were utilized to train TUSNet, a novel deep learning framework for end-to-end transcranial ultrasound simulation and phase aberration correction. TUSNet achieves unparalleled efficiency and accuracy, computing ultrasound pressure fields and phase corrections in 21 milliseconds (over 1200× faster than k-Wave) with a mean focal positioning error of 0.18 mm and 98.3% peak pressure accuracy. This dataset includes the 5,000 synthetic skull CTs that we sampled from SkullGAN for our training, along with indices of similar skulls that should be excluded to yield the TUSNet training set. More details about this filtering are available on the TUSNet Github repository. By publishing this data (and the SkullGAN model), we aim to advance TUS research by providing a scalable and accessible resource for training and validating deep learning models.
DOI: 10.17632/d5p97fcx3s
title: Radula stl files

description: Specimens were scanned using single propagation distance tomography at the European Synchrotron Radiation Facility (ESRF) in Grenoble, France using the ID19 microtomography beamline. Every specimen used the following scan parameters: 2999 projections collected for a 360° rotation; 0.1 ms exposure time; 360 nm voxel size; 20 mm sample-to-detector distance; x-ray energy of 26.5 keV. Specimen preparation for scanning electron microscopy (SEM) was the same as for synchrotron preparation except that radulae were mounted on stubs with double-sided conductive tape, and coated with Au-Pd for imaging with a Philips XL 30 scanning electron microscope at the Museo Argentino de Ciencias Naturales.

Synchrotron *.tif stacks were reconstructed with Paganin phase retrieval, imported into Avizo Lite 9.4 (Thermo Fisher Scientific) and visually explored for mature rachidian teeth that showed no evidence of in vivo wear or post-mortem breaking during sample preparation. The scan volume was then cropped to these sections to facilitate easier data management. Segmentation of one tooth per species was performed semi-automatically: the “Magic Wand” tool was used initially to select the tooth volume based on greyscale intensity and then to manually remove any traces of the supporting radular membrane, mount, or mounting glue remained attached to the teeth. Once segmented, each tooth was exported as an *.stl and brought into Geomagic Wrap 2017 (3D Systems) for smoothing and cleaning of artefacts. In one specimen (Acanthais), damage to the tooth was only apparent after segmentation.
DOI: 10.6084/m9.figshare.22193324.v1
title: Bovidae (Mammalia) from the early Middle Miocene of Maboko, Kenya

description: We describe here the Bovidae from the early Middle Miocene site of Maboko, Kenya, known for its rich and highly diverse assemblage of Primates. They are attributed to two taxa of slightly different sizes, <i>Turcocerus africanus</i> n.sp. and <i>Kubanotragus pickfordi</i>. In addition to Kenya, <i>Turcocerus</i> ranges through the Middle Miocene from Turkey to China; it might have originated in Africa but the lack of precise dating weakens any phylogeographic hypothesis. <i>Kubanotragus</i> has similar chronological and geographic ranges. Both Maboko species retain low levels of hypsodonty compared to their northern relatives and may have been less specialised for grazing than Eurasian taxa. The Maboko Bovidae illustrate an early diversification of the family in Africa that appears to pre-date the major diversification of Bovidae and appearance of the diverse clades that are characteristic of modern African pecoran faunas.
DOI: 10.6084/m9.figshare.6265502.v1
title: Patient12

description: Female Patient with 178 slice of pulmonary embolism CT-Angiography.
DOI: 10.6084/m9.figshare.7469921.v1
title: U'Ren et al. - ITS2 MiSeq reads

description: Demultiplexed Illumina MiSeq R2 data (representing the ITS2 region) for each sample. <br>
DOI: 10.17632/pvtwdz8npt
title: COVID-19 data by States in Nigeria

description: This dataset was collected from the official website of the Nigeria Centre for Disease Control (NCDC) provides the daily incidence of COVID-19 from February 23, 2020, to April 10, 2021, were organised in a spreadsheet to build a daily time-series database. The dataset also contains population per state in Nigeria, COVID-19 testing laboratories, etc.
DOI: 10.6084/m9.figshare.25932532.v2
title: Optimizing biodiversity resilience: A wildlife dispersal-based framework for strategic conservation corridor design in protected area networks

description: The expansion and interconnection of protected areas are central to achieving the Kunming-Montreal Global Biodiversity Framework’s ambitious goals, yet their synergistic relationship remains underexplored. Here, we propose a framework integrating wildlife dispersal-based connectivity to address two objectives in China: (1) constructing a cost-effective nature conservation network by combining connectivity and biodiversity prioritization, and (2) evaluating climate and anthropogenic risks while addressing habitat representation gaps. The framework aims to designate 30% of land as protected areas and informally allocate another 30% as conservation priority corridors. Results show this strategy connects 57% of existing protected areas, protects 74% of priority zones, and achieves 89% of habitat representation targets. While current protected areas mitigate climate and anthropogenic threats, future expansion faces challenges due to geographic variations in threats and the need for adequate representation. Our approach identifies and prioritizes these challenges, offering a data-driven pathway to achieve Kunming-Montreal targets.
DOI: 10.6084/m9.figshare.27101665.v1
title: Images of preserved and 3D-printed round goby

description: The data set contains morphometric images of 112 round goby <i>(Neogobius melanostomus)</i> photographed from the side and from top. The images are stored as .png files in three folders: "3DFish" (contains images of three 3D-printed fish), "RG_lateral" (contains 112 images of round goby photographed from the side), and "RG_Top" (contains 112 images of round goby photographed from the top).
DOI: 10.25452/figshare.plus.19294641.v2
title: sourcedata (raw EEG files) from the study "effects of TBS of the DLPFC with TMS-EEG"

description: Raw EEG files of the entire session prior to any preprocessing (Zipped) This dataset contains the raw EEG recordings from 24 subjects that participated in an experiment designed to investigate the effects of intermittent theta burst stimulation (iTBS) and continuous theta burst stimulation (cTBS) (for a detailed description please refer to the original article doi: https://doi.org/10.1038/s41597-022-01820-6). <br> Documentation files: <br> <strong>README.txt</strong>: Description of dataset and its experimental sessions, MATLAB scripts, getting started (how to use the codes) and contact for queries. <br> <strong>dataset_description.csv</strong>: Name of experiment, reference to manuscript, authors and basic description of the datasets. For a detailed description please refer to the original article (doi: https://doi.org/10.1101/2021.06.21.449219) and metadata file. <br> <strong>participants.csv</strong>: Spreadsheet with the participant number, demographic information (age, gender, ethnicity and years of education) and experimental sessions' information (RMT, TBS intensity, TEP intensity, sessions dates, session condition and adverse events) for the 24 subjects.<br> <br> <strong>metadata summary.csv</strong>: Measurement(s); Technology Type(s); Factor Types(s); Sample Characteristic - Organism.<br> <br> See related materials in Collection at: https://doi.org/10.25452/figshare.plus.c.5910329
DOI: 10.6084/m9.figshare.12198987.v1
title: Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam

description: Genome assembly and annotation of the pliocardiine clam Archivesica marissinica and its endosymbiont genome (here named Candidatus Vesicomyosocius marissinica).
DOI: 10.6084/m9.figshare.21865410.v1
title: Data from airborne hyperspectral and Sentinel imagery to quantify winter wheat traits through ensemble modeling approaches

description: The dataset includes agronomical, spectral and thermal information derived from a field experiment sowed with winter wheat (<em>Triticum aestivum</em> L.) at La Chimenea farm station (40º04’N, 03º32’W, 550 m a.s.l.), near Aranjuez (Madrid, Spain) during two consecutive growing seasons: 2017/2018 and 2018/2019. Each year, it was established 32 plots that were randomly divided into 4 N levels (N0, N1, N2, N3) and two water levels (w1 and W2) with four replications. The N levels ranged from non-fertilized (N0) to over-fertilized (N3). The two water levels were established at the beginning of flowering by irrigating half of the plots (W2). Spectral and thermal measurements were collected from a hyperspectral and a thermal sensors onboard an aircraft. The hyperspectral imager covering the VNIR region (Hyperspec VNIR model, Headwall Photonics, Fitchburg, MA, USA) captured the reflected light between 400 and 850 nm. <strong>+ Detailed description</strong> The file ‘dataset_crop_VIs.xlsx’ contains treatment factors, agronomic variables of wheat at flowering and harvest (aboveground biomass dry weight, N concentration, yield and others defined in the key spreadsheet), vegetation indices calculated from the hyperspectral airborne imagery, water deficit index, vegetation indices calculated from Sentinel-2 satellite imagery, solar induce fluorescence and Sentinel-2 bands convolved with the hyperspectral airborne information. The file “airborne_reflectance_1nm.xlsx” contains treatment factors and the average spectra of each plot resampled to 1 nm measured extracted from the airborne hyperspectral imagery acquired in two different dates. <strong>+ Value of the data</strong> The present dataset could help researchers and farmers to identify suitable genotypes and their responses to nitrogen and water stress. +The original images used are available under request to the authors. More detailed information about the dataset and methodology can be found in the article entitled “Airborne hyperspectral and Sentinel imagery to quantify winter wheat traits through ensemble modeling approaches” published in Precision Agriculture by Pancorbo et al. in 2023.
DOI: 10.25420/britishmuseum.27869055.v1
title: 2019LG07-0000 Project Metadata

description: Metadata spreadsheet with all the metadata information for the assets uploaded in project 2019LG07 following the Material Culture Ethnography Metadata Schema (MCEMS), which was developed for the Endangered Material Knowledge Programme (EMKP). MCEMS is intended to record the metadata for digital objects that were created as part of ethnographic research recording material culture, living heritage, cultural practices, and different forms of knowledge. Its aim is to aid the preservation of ethnography-specific information, facilitate archiving for future re-use and accessibility, and increase the online findability and presence of ethnographic data and research.
DOI: 10.6084/m9.figshare.12912416.v1
title: data_for_datacarpentries

description: intermediate data frame for ggplot lesson
DOI: 10.6084/m9.figshare.1481268.v1
title: Bridge Designs for Modeling Systems With Low Noise

description: For deterministic computer simulations, Gaussian process models are a standard procedure for fitting data. These models can be used only when the study design avoids having replicated points. This characteristic is also desirable for one-dimensional projections of the design, since it may happen that one of the design factors has a strongly nonlinear effect on the response. Latin hypercube designs have uniform one-dimensional projections, but are not efficient for fitting low-order polynomials when there is a small error variance. <i>D</i>-optimal designs are very efficient for polynomial fitting but have substantial replication in projections. We propose a new class of designs that bridge the gap between <i>D</i>-optimal designs and <i>D</i>-optimal Latin hypercube designs. These designs guarantee a minimum distance between points in any one-dimensional projection allowing for the fit of either polynomial or Gaussian process models. Subject to this constraint they are <i>D</i>-optimal for a prespecified model.
DOI: 10.6084/m9.figshare.25953646.v2
title: Data, R code and data description of "Changes in soil carbon and nitrogen along a 3-m vertical profile and environmental regulation in alpine grassland on the Tibetan Plateau".

description: Data, R code and data description of "Changes in soil carbon and nitrogen along a 3-m vertical profile and environmental regulation in alpine grassland on the Tibetan Plateau".
DOI: 10.17632/hjmvnf48gh
title: Liu et al., Epigenetic reprogramming shapes the cellular landscape of schwannoma: CyTOF data

description: Cytof .fcs data for Liu et al., Epigenetic reprogramming shapes the cellular landscape of schwannoma, Nature Communications 2023
DOI: 10.25452/figshare.plus.21673721.v3
title: Dataset Validation - VCF Files

description: This dataset contains VCF format files containing the whole genome sequence of the IBS001 genome, belonging to an IBS (Iberian Populations in Spain) individual. This genome was sequenced at 40X coverage in both Illumina and MGI sequencing platforms, and then respectively downsampled to 1x coverage with samtools. Genotype likelihood calculations and calling was performed using bcftools, and imputation of the low-coverage genotypes was performed using GLIMPSE1.See related materials at: https://doi.org/10.25452/figshare.plus.c.6347534
DOI: 10.6084/m9.figshare.11673645.v1
title: ProcessData

description: This folder contains [ProcessData], a matlab structure file which contains information pertaining to the Gaze-In-Wild project. For more information, please visit: http://www.cis.rit.edu/~rsk3900/gaze-in-wild/<br>
DOI: 10.6084/m9.figshare.11994801.v1
title: Robot-assisted intervention

description: Required description can be found in the paper: DOI:10.3389/frobt.2020.00037<br>
DOI: 10.6084/m9.figshare.25979407.v2
title: Drug Trials

description: Videos for zoospores exposed to several actin and tubulin perturbing drugs
DOI: 10.6084/m9.figshare.28385585.v1
title: Impacto de los Factores Sociodemográficos y Psicosociales en el Síndrome de Burnout en Docentes Universitarios: Una Revisión Sistemática

description: Este estudio tiene como propósito analizar la influencia de los factores sociodemográficos y psicosociales en la incidencia y severidad del síndrome de Burnout en docentes universitarios. A través de una revisión sistemática, se examinaron 60 estudios cuantitativos publicados entre 2019 y mayo de 2024, seleccionados de Scopus y Web of Science, abarcando investigaciones de 25 países. Los hallazgos revelan que el Burnout está estrechamente relacionado con la carga laboral excesiva, la escasez de recursos y la falta de apoyo institucional, lo que incrementa significativamente sus niveles en el profesorado. Asimismo, se identificó que el apoyo social, tanto de colegas como de la administración, actúa como un factor protector. Además, variables sociodemográficas como la edad, el género y los años de experiencia juegan un papel clave en la predisposición al síndrome. Desde una perspectiva práctica, los resultados enfatizan la importancia de un enfoque multidimensional en la prevención del Burnout, promoviendo programas de bienestar integral que incluyan estrategias de intervención psicológica y física. Dado el número limitado de revisiones sistemáticas en este ámbito, este estudio contribuye significativamente al conocimiento sobre los factores que inciden en el Burnout docente, proporcionando una base sólida para futuras investigaciones y el diseño de políticas de prevención en el contexto universitario.
DOI: 10.17632/ff2546hxtc
title: Data for: Large tunability of frequency in Fe0.5Co0.5-ZnO/PZN-PT nanogranular films with high resistivity
DOI: 10.17632/ygcvw9k9k8
title: Data for Value Co-Creation with DART model and Hotel Guests' Perceived Value in Greek Hotel context , Customers Perspective

description: The data show the Value Co-Creation process based on the four building blocks of the DART model ( Dialogue, Access, Risk Transparency) between hotel guests and hotels in Greece and how the first perceive Price and Product. Price and Product constitute hotel guests' Perceived Value. The survey took place at the Greek airports of Athens and Corfu while holidaymakers were waiting for their return flights.
DOI: 10.6084/m9.figshare.26076346.v1
title: DICOM headers

description: Detailed acquisition parameters for each volume are available in TXT files, which were extracted from the original DICOM file headers.
DOI: 10.17632/pk3s8vt62j
title: Data for: Nickel isotopes and rare earth elements systematics in marine hydrogenetic and hydrothermal ferromanganese deposits

description: Those two tables contain the nickel isotope values and elemental ratios (table 1) and the complete major and trace element geochemistry (table S2).
DOI: 10.6084/m9.figshare.15167046.v2
title: Raw.Data. Meta-analysis - Factors related to lower limb performance in children and adolescents aged 7 to 17 years

description: Data set referring to the studies included in the the academic article: Factors related to lower limb performance in children and adolescents aged 7 to 17 years: A systematic review with meta-analysis.
DOI: 10.6084/m9.figshare.21301350.v1
title: PRODeepSyn

description: Download these files and put them into the path baselines/PRODeepSyn-main/cell/data_ours/
DOI: 10.6084/m9.figshare.21406731.v4
title: A global dataset of soil gross nitrogen transformation rates

description: Source_Data_Figure_2 and 3 R_Codes used in data analysis
DOI: 10.6084/m9.figshare.5004191.v1
title: fig1-phylogenomic-tree-alignment

description: protein tree alignment <br>
DOI: 10.6084/m9.figshare.7228307.v2
title: Cervical vagotomy and electroneurogram (VENG) approach in near-term fetal sheep

description: Little is known about the vagus nerve activity in near-term fetuses. The chronically instrumented unanesthetized fetal sheep model is used to study human fetal physiology, because it permits chronic instrumentation with catheters and electrodes, which allow repetitive blood sampling, substance injection and recording of bioelectrical activity. We describe the procedures required to manipulate the vagus nerve activity in this model.<br>We refer the reader to the related published report in JoVE (doi: 10.3791/52581), available in full text via PubMed Canada and as video here.<br>
DOI: 10.6084/m9.figshare.19122233.v1
title: Demographic proforma.docx

description: The document is a demographic proforma used for the study "<b>Effectiveness of a peanut ball device during labour on maternal and neonatal outcomes: Randomized controlled trial"</b>
DOI: 10.6084/m9.figshare.19152839.v2
title: Cell Atlas of the Xenopus Laevis at Single-Cell Resolution

description: <b>dge_raw_data.zip</b>: contains separate raw count matrices for 17 adult Xenopus tissues (bladder, bone marrow, brain, eye, heart, intestine, kidney, liver, lung, muscle, ovary, oviduct, pancreas, skin, spleen, stomach and testis) and 4 larva stages (St48, St54, St59 and St66) <b>dge_cell_info.zip</b>: contains the cell annotations corresponding to dge_raw_data.zip, including tSNE coordinates, clusters, stages and cell-type annotations.<b>Xenopus_Figure1.h5ad</b>: contains both raw count and normalized datasets (contains only highly variable genes) for 501,358 cells in XCL, which can be processed into the python environment with SCANPY directly.<b>Xenopus_Figure1_cell_info.csv</b>: contains the cell annotations for 501,358 cells in XCL, including tSNE coordinates, clusters, tissue origins, stages and cell-type annotations.<b>Larva_Figure4.h5ad</b>: contains both raw count and normalized datasets (contains only highly variable genes) for 188,020 larva cells in XCL, which can be processed into the python environment with SCANPY directly.<b>Larva_Figure4_cell_info.csv</b>: contains the cell annotations for 188,020 larva cells in XCL, including tSNE coordinates, clusters, stages and cell-type annotations.<br>
DOI: 10.6084/m9.figshare.19165595.v1
title: Prediction results

description: Prediction results for cis-/trans-effect mutations based on CCL and TCGA data, respectively.