cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/cadh2-wbh46
title: TRIM5-21R 2D lattice

description: TRIM5-21R 2D lattice prepared by Barbie Ganser-Pornillos and Viswanathan Chandrasekaran
description: <strong>Tilt Series Date:</strong> 2012-11-20</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> Unspecified</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: None μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Viswanathan Chandrasekarangrids purified the protein, Barbie Ganser-Pornillos assembled protein into 2D lattice. The sample was was plunge frozen and imaged at Caltech by Cora Woodward and Kelly Dryden</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-20-9/rawdata/</p>12nov20_TRIM5_21R_grid4_AT1BT1_00010005.mrc,  Tilt Series (Pixel Size 0.45 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2012-11-20-9/rawdata/12nov20_TRIM5_21R_grid4_AT1BT1_00010005.mrc"
        > <i class="download icon"></i> Download </a></p>

        12nov20_TRIM5_21R_grid4_AT1BT1_00010005_part122_17.rec,  Reconstruction (Pixel Size 1.8 nm), 530.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29986831
title: Supplementary Material for: Visual outcomes and cost-utility analyses of toric intraocular lens implantation in cataract patients over 80 with corneal astigmatism: a retrospective cohort study

description: Introduction: This study aimed to assess visual and refractive outcomes and cost utility of toric intraocular lens (IOLs) implantation in cataract patients over 80 with corneal astigmatism.
Methods: Patients &gt;= 80 years with corneal astigmatism &gt;= 1.50 diopters (D) who underwent cataract surgery with toric or monofocal IOLs were enrolled. Uncorrected distance visual acuity (UDVA) and residual refractive astigmatism at the 3-month postoperative follow-up were compared between the toric and non-toric groups. Cost data were gathered, long-term quality-adjusted life years (QALYs) were calculated, and the incremental cost-effectiveness ratio (ICER) was determined.
Results: The study included 50 eyes from 50 patients, with 25 eyes receiving toric IOLs and the remaining 25 receiving non-toric IOLs. Three months after surgery, both the mean UDVA (P &lt; 0.0001) and the mean residual refractive astigmatism (P &lt; 0.0001) in the toric group significantly outperformed those in the non-toric group. An average of 4.04 ± 0.25 QALYs were obtained in the toric group through cataract surgery, while 3.78 ± 0.26 QALYs were obtained in the non-toric group. The median ICER stood at 11,222 CNY (1,753 USD) per QALY [95% CI: 5,840 ~ 25,295 CNY (913 ~ 3,952 USD) per QALY], which is lower than the threshold of cost-effectiveness in China (80,976 CNY (12,653 USD) per QALY).
Conclusion: In cataract patients aged over 80 with corneal astigmatism and no complicating vision-threatening conditions, toric IOL implantation not only improved UDVA and reduced residual astigmatism but also emerged as a cost-effective intervention compared with non-toric IOL implantation.
DOI: 10.6084/m9.figshare.29986831.v1
title: Supplementary Material for: Visual outcomes and cost-utility analyses of toric intraocular lens implantation in cataract patients over 80 with corneal astigmatism: a retrospective cohort study

description: Introduction: This study aimed to assess visual and refractive outcomes and cost utility of toric intraocular lens (IOLs) implantation in cataract patients over 80 with corneal astigmatism.
Methods: Patients &gt;= 80 years with corneal astigmatism &gt;= 1.50 diopters (D) who underwent cataract surgery with toric or monofocal IOLs were enrolled. Uncorrected distance visual acuity (UDVA) and residual refractive astigmatism at the 3-month postoperative follow-up were compared between the toric and non-toric groups. Cost data were gathered, long-term quality-adjusted life years (QALYs) were calculated, and the incremental cost-effectiveness ratio (ICER) was determined.
Results: The study included 50 eyes from 50 patients, with 25 eyes receiving toric IOLs and the remaining 25 receiving non-toric IOLs. Three months after surgery, both the mean UDVA (P &lt; 0.0001) and the mean residual refractive astigmatism (P &lt; 0.0001) in the toric group significantly outperformed those in the non-toric group. An average of 4.04 ± 0.25 QALYs were obtained in the toric group through cataract surgery, while 3.78 ± 0.26 QALYs were obtained in the non-toric group. The median ICER stood at 11,222 CNY (1,753 USD) per QALY [95% CI: 5,840 ~ 25,295 CNY (913 ~ 3,952 USD) per QALY], which is lower than the threshold of cost-effectiveness in China (80,976 CNY (12,653 USD) per QALY).
Conclusion: In cataract patients aged over 80 with corneal astigmatism and no complicating vision-threatening conditions, toric IOL implantation not only improved UDVA and reduced residual astigmatism but also emerged as a cost-effective intervention compared with non-toric IOL implantation.
DOI: 10.22002/zxwtk-9e733
title: Hyphomonas session7 41KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-02-05</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1.5°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-02-05-59/rawdata/</p>09feb05a_Hm7I_070.mrc,  Tilt Series (Pixel Size 0.512 nm), 704.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09feb05a_Hm7I_070_1k.rec,  Reconstruction (Pixel Size 1.024 nm), 178.3 MB  
        
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DOI: 10.6084/m9.figshare.29986834
title: Supplementary Material for: Investigating decision-making under risk in pathological gambling using a virtual slot machine – a pilot eye-tracking study

description: Pathological gambling (PG) is characterized by altered decision-making. Even though studies have investigated decision-making in patients with PG, the effects of win-contingent stimuli thereon are not well understood yet. Thus, we conducted a study in patients with PG (n = 10) and healthy individuals (n = 14), who performed two versions of a slot machine gambling task with and without win-contingent cues, while decision making and gaze fixations were assessed using high-resolution eye-tracking. 
Patients with PG showed higher rates of high-risk decisions, lower rates of rational choices and showed less visual attention to probability information, but increased visual attention towards gambling cues, compared to healthy individuals. In the presence of win-contingent gambling cues, participants needed significantly more time to decide between high-risk versus low-risk gambles and spent significantly less time watching the probability information. 
Findings highlight the relevance of gambling associated cues in pathological gambling. Targeting altered cue-reactivity could contribute to normalizing risky decision-making in patients with PG.
DOI: 10.6084/m9.figshare.29986834.v1
title: Supplementary Material for: Investigating decision-making under risk in pathological gambling using a virtual slot machine – a pilot eye-tracking study

description: Pathological gambling (PG) is characterized by altered decision-making. Even though studies have investigated decision-making in patients with PG, the effects of win-contingent stimuli thereon are not well understood yet. Thus, we conducted a study in patients with PG (n = 10) and healthy individuals (n = 14), who performed two versions of a slot machine gambling task with and without win-contingent cues, while decision making and gaze fixations were assessed using high-resolution eye-tracking. 
Patients with PG showed higher rates of high-risk decisions, lower rates of rational choices and showed less visual attention to probability information, but increased visual attention towards gambling cues, compared to healthy individuals. In the presence of win-contingent gambling cues, participants needed significantly more time to decide between high-risk versus low-risk gambles and spent significantly less time watching the probability information. 
Findings highlight the relevance of gambling associated cues in pathological gambling. Targeting altered cue-reactivity could contribute to normalizing risky decision-making in patients with PG.
DOI: 10.22002/mkbbv-05f66
title: HeLa CHMP4A+VPS4DN

description: HeLa cells transfected with CHMP4A & VPS4DN constructs
description: <strong>Tilt Series Date:</strong> 2011-02-08</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Constructs provided by Wes Sundquist. Cells transfected, frozen and imaged at Caltech by Cora Woodward</p>
<strong>Purification / Growth Conditions / Treatment:</strong> whole cells grown on grids and transfected with polyfect</p>
<strong>Sample Preparation:</strong> manual blotting</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-02-08-7/rawdata/</p>11feb08b_C50-4c_008.st,  Tilt Series (Pixel Size 0.5 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-02-08-7/rawdata/11feb08b_C50-4c_008.st"
        > <i class="download icon"></i> Download </a></p>

        11feb08b_C50-4c_008_full.rec,  Reconstruction (Pixel Size 2.0 nm), 408.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.zurfn9
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Carex conica scabrocaudata"
 ]
}

 The dataset includes 28 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045774-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/fr2nf-r3t33
title: Calubactor EB session22 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-08-07</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Zhuo/Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, EB 0.02mg/ml overnight 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-22/rawdata/</p>09aug07a_b266c_030.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-22/rawdata/09aug07a_b266c_030.mrc"
        > <i class="download icon"></i> Download </a></p>

        09aug07a_b266c_030_part.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-08-07-22/3dimage_8434/09aug07a_b266c_030_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/n728b-0gj37
title: A22-treated wild type

description: Raw data files of A22-treated wild type
description: <strong>Tilt Series Date:</strong> 2009-07-21</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR Peach</p>
<strong>Collaborators and Roles:</strong> Cell culture and treatment by Zhuo Li. Data collected by Zhuo Li. Processed by Zhuo Li. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponentially growing NA1000 cells were treated with 10 ug/ml A22 for 2 hours before freezing. </p>
<strong>Sample Preparation:</strong> 10 nm gold. </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-18/rawdata/</p>09jul21a_A22wt_041.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-18/rawdata/09jul21a_A22wt_041.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jul21a_A22wt_041_full.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-07-21-18/3dimage_5896/09jul21a_A22wt_041_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/79zdh-ae351
title: Methanotroph

description: Methanotroph_starved
description: <strong>Tilt Series Date:</strong> 2013-06-22</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Methyloprofundus sedimenti</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Victoria Orphan</p>
<strong>Purification / Growth Conditions / Treatment:</strong> starved</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-36/rawdata/</p>methano_starved0005.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-36/rawdata/methano_starved0005.mrc"
        > <i class="download icon"></i> Download </a></p>

        methano_starved0005_part121_1.rec,  Reconstruction (Pixel Size 1.92 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2013-06-22-36/3dimage_32270/methano_starved0005_part121_1.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5517/ccdc.csd.cc2l1662
title: CCDC 2384433: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l16yt
title: CCDC 2384456: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l1673
title: CCDC 2384434: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l17gc
title: CCDC 2384472: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/9fnfy-ck110
title: GFP-MreB fusion methanol control

description: Raw data files of GFP-MreB fusion methanol control
description: <strong>Tilt Series Date:</strong> 2009-08-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, REACH</p>
<strong>Collaborators and Roles:</strong> Experiments were done by Zhuo Li.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The GFP-MreB-expressing NA1000 cells were cultured to exponential phase and treated with methanol as a control.</p>
<strong>Sample Preparation:</strong> 10 nm gold.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-08-01-83/rawdata/</p>09aug01a_methanolgfmr1_083.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.0 GB  
        
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        09aug01a_methanolgfmr1_083_full.rec,  Reconstruction (Pixel Size 2.4 nm), 367.0 MB  
        
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DOI: 10.5517/ccdc.csd.cc2l1651
title: CCDC 2384432: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l18b8
title: CCDC 2384499: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2l18xv
title: CCDC 2384517: Experimental Crystal Structure Determination

description: Related Article: Lin-Hong Jiang, Xuan Wang, Wen-Yu Li, Yi Zhao, Huan-Huan Zhang, Yong-Chun Luo|2025|Org.Lett.|27|8516|doi:10.1021/acs.orglett.5c02429
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.