cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3566139
title: ECOBREED WP2 T2.1 Winter common wheat (Triticum aestivum) - Early maturity group

description: Description of the winter common wheat (Triticum aestivum) early maturity group nursery incl. presence of disease resistance genes and agronomically important genes (e.g. Rht, Ppd). The nursery is tested within T2.1 in multi-environment field trials in Slovakia (by NPPC), Hungary (by MTA-ATK), Slovenia (by RGA), Serbia (by IFVCNS) and Romania (by NARDI) in 2019/2020 and 2020/2021. Molecular marker work was carried out within T2.4 by MTA-ATK and NARDI.
DOI: 10.5281/zenodo.3566140
title: ECOBREED WP2 T2.1 Winter common wheat (Triticum aestivum) - Early maturity group

description: Description of the winter common wheat (Triticum aestivum) early maturity group nursery. Tested within T2.1 in Slovakia (by NPPC), Hungary (by MTA-ATK), Slovenia (by RGA), Serbia (by IFVCNS) and Romania (by NARDI) in 2019/2020.
DOI: 10.5281/zenodo.4963805
title: ECOBREED WP2 T2.1 Winter common wheat (Triticum aestivum) - Early maturity group

description: Description of the winter common wheat (Triticum aestivum) early maturity group nursery incl. presence of disease resistance genes and agronomically important genes (e.g. Rht, Ppd). The nursery is tested within T2.1 in multi-environment field trials in Slovakia (by NPPC), Hungary (by MTA-ATK), Slovenia (by RGA), Serbia (by IFVCNS) and Romania (by NARDI) in 2019/2020 and 2020/2021. Molecular marker work was carried out within T2.4 by MTA-ATK and NARDI.
DOI: 10.5281/zenodo.3566866
title: ECOBREED WP2 T2.1 Winter durum wheat (Triticum durum) nursery

description: Description of the winter durum wheat (Triticum durum) nursery. Tested within T2.1 in Austria (by BOKU), Hungary (by MTA-ATK) and Italy (by UNITUS). Results included from the season 2018/19.
DOI: 10.5281/zenodo.3566867
title: ECOBREED WP2 T2.1 Winter durum wheat (Triticum durum) nursery

description: Description of the winter durum wheat (Triticum durum) nursery. Tested within T2.1 in Austria (by BOKU), Hungary (by MTA-ATK) and Italy (by UNITUS). Results included from the season 2018/19.
DOI: 10.5281/zenodo.3565965
title: ECOBREED WP2 T2.1 Winter common wheat (Triticum aestivum) - Late maturity group

description: Description of the winter common wheat (Triticum aestivum) late maturity group nursery. Tested within T2.1 in Germany (by Secobra), Czech Republic (by Selgen) and Slovakia (by NPPC) in 2019/2020.
DOI: 10.5281/zenodo.3565964
title: ECOBREED WP2 T2.1 Winter common wheat (Triticum aestivum) - Late maturity group

description: Description of the winter common wheat (Triticum aestivum) late maturity group nursery. Tested within T2.1 in Germany (by Secobra), Czech Republic (by Selgen) and Slovakia (by NPPC) in 2019/2020.
DOI: 10.5281/zenodo.5024629
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.5031409
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.6772187
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.7078508
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.7113025
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.7290714
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.5024628
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.7330032
title: Inner Oslofjorden Phytoplankton Database

description: The inner Oslofjorden Phytoplankton Database is a comprehensive data collection containing quantitative phytoplankton cell counts, associated metadata and available environmental data. The primary source for the collection is the monitoring programme for inner Oslofjorden conducted with varying yearly frequencies from 1973 until today, mainly by the Norwegian Institute for Water Research (NIVA). From 2006 to 2020, sampling frequency was approximately monthly. Secondary, the database is also supplied with data from various projects from 1896 to 1976, conducted by researchers from University of Oslo (UiO).
DOI: 10.5281/zenodo.3567847
title: ECOBREED WP2 T2.2 Wheat AMF compatibility nursery

description: Description of the winter common wheat (Triticum aestivum) AMF compatibility nursery. Germplasm to be tested within T2.2 in Austria (by BOKU) and the UK (by UNEW).
DOI: 10.5281/zenodo.3567848
title: ECOBREED WP2 T2.2 Wheat AMF compatibility nursery

description: Description of the winter common wheat (Triticum aestivum) AMF compatibility nursery. Germplasm to be tested within T2.2 in Austria (by BOKU) and the UK (by UNEW).
DOI: 10.23729/7dca0741-6f21-4bcf-bdb6-ed7feeea9515
title: jimaRT preview

description: A standard jimaRT tool used to check resolution of x-ray instruments. The sample was measured with XCT so that we could safely remove excess material around the sample (using the information about the structure of the sample holder that we get using XCT) before AFM measurements. Preview of PAS-dataset https://doi.org/10.23729/83bc68a4-977c-4de9-a78d-0a9dfef7d8ee
DOI: 10.18739/a2222r550
title: Atmospheric measurements via Multiple Axis Differential Optical Absorption Spectroscopy (MAXDOAS), Utqiagvik (Barrow), Alaska 2012-2018
DOI: 10.5281/zenodo.7198322
title: Deijns et al. NHESS -SAR Timing- GH Event Inventories

description: These shapefiles contain four geomorphic hazard (GH) events with a total of around 2500 manually mapped landslides and flash floods. These four GH events are located in the southern part of the Rwenzori Mountains (Uganda), the Karongi district (Rwanda), the hills of Nyempundu in the Cibitoke region (Burundi) and west of the city of Uvira (Democratic Republic of the Congo). This inventory is used in the paper: "Timing landslide and flash flood events from SAR satellite: a regionally applicable methodology illustrated in African cloud-covered tropical environments " published in Natural Hazards and Earth System Sciences. When using the dataset, you should refer to this work. This research has been supported by the Belgian Federal Science Policy Office through two grants (grant nos. BR/165/A3/PASTECA and B2/223/P1/GEOTROP).
DOI: 10.3886/icpsr01273
title: Investment-Specific Technology Growth: Concepts and Recent Estimates
title: Archival Version

description: The strength of United States productivity growth in recent years has been attributed to technological improvements that are, in some sense, embodied in new types of capital equipment. However, traditional growth theory and growth accounting techniques -- which emphasize the role of disembodied, neutral technological progress -- are deficient in explaining this phenomenon. In this article, the author outlines a model of investment-specific technological change that has become popular for describing the notion of capital-embodied growth and summarizes some recent estimates of the importance of this type of technological progress for assessing United States productivity trends.
description: Datasets: 
 
 DS1: Dataset
description: (1) The file submitted is the data file, 0211mpd.xls. (2) These data are part of ICPSR's Publication-Related Archive and are distributed exactly as they arrived from the data depositor. ICPSR has not checked or processed this material. Users should consult the investigator(s) if further information is desired.
DOI: 10.5281/zenodo.5582846
title: ArchiHeart - Dataset : Software containers, SQlite database and DGRP data

description: <strong>Title : </strong>Genetic architecture of natural variation of cardiac performance in flies <strong>Abstract : </strong>Deciphering the genetic architecture of human cardiac disorders is of fundamental importance but their underlying complexity is a major hurdle. We investigated the natural variation of cardiac performance in the sequenced inbred lines of the Drosophila Genetic Reference Panel (DGRP)1. Genome Wide Associations Studies (GWAS) identified genetic networks associated with natural variation of cardiac traits which were extensively validated with <em>in vivo</em> cardiac-specific gene manipulation<em>.</em> Specifically, non-coding variants that we identified were used to map potential regulatory non-coding regions, which in turn were employed to predict Transcription Factors (TFs) binding sites. Cognate TFs, many of which themselves bear polymorphisms associated with variations of cardiac performance, were also validated by heart specific knockdown. Although rarely studied, the genetic control of phenotypic variability is of primary importance, with both medical and fundamental implications. We showed that the natural variations associated with variability in cardiac performance affect a set of genes overlapping with those associated with average traits but through different variants in the same genes. Furthermore, we showed that phenotypic variability is also associated with gene regulatory network deviations. More importantly, we documented correlations between genes associated with cardiac phenotypes in both flies and humans, which supports a conserved genetic architecture regulating adult cardiac function from arthropods to mammals. Specifically, roles for PAX9 and EGR2 in the regulation of the cardiac rhythm were established in both models, illustrating that the characteristics of natural variations in cardiac function identified in Drosophila can accelerate discovery in humans. <strong>Data</strong> : phenosnip_singleageanalysis.img : singularity v2.6 image with R 3.4.4 and python 2.7, used for preliminary statistical analysis. phenosnip_singleagegwas.img : singualrity v2.6 image with FastLMM and plink, used for GWAS analysis phenosnip_singleageepistasis.img : singualrity c2.6 image with fastEpistasis and plink, used for epistasis analysis Phenosnip.sqlite.tar.gz : SQlite database containing the genotype information from DGRP consortium and the phenotype data of the study (1 week aged drosophila) dgrp2.tar.gz : BED, BIM and FAM files with genetic information of the DGRP lines (data issued from the DGRP consortium) datasets_saha_et_al.zip : raw data (individual phenotypes of DGRP lines / variants identified by GWAS / individual phenotypes from validation experiments) and large scale datasets used for analyses (PPI and genetic interactions / regulatory variants)
DOI: 10.6084/m9.figshare.20192672
title: Supplementary Material for: SENP3 Aggravates Renal Tubular Epithelial Cell Apoptosis in Lipopolysaccharide-Induced Acute Kidney Injury via deSUMOylation of Drp1

description: <b><i>Background:</i></b> Sepsis causes acute kidney injury (AKI) in critically ill patients, although the mechanisms underlying the pathophysiology are not fully understood. SUMO-specific proteases 3 (SENP3), a member of the deSUMOylating enzyme family, is known as a redox sensor and could regulate multiple cellular signaling pathways. However, the role of SENP3 in septic AKI remains unclear. <b><i>Objectives:</i></b> The purpose of this study was to investigate the role of SENP3 in lipopolysaccharide (LPS)-induced AKI model. <b><i>Methods:</i></b> C57BL/6 mice were given intraperitoneal injection of LPS (10 mg/kg). NRK-52E cells were treated with LPS in vitro. The SENP3 protein expression was analyzed by Western blotting. The levels of reactive oxygen species (ROS) in cells were measured using DCFH-DA. SENP3-siRNA or SENP3-plasmid was, respectively, transfected into NRK-52E cells to knock down or overexpress the SENP3 expression. Western blotting was performed to analyze the protein expression of cleaved caspase 3, cytochrome c, and dynamin-related protein 1 (Drp1). The mitochondrial membrane potential was measured using JC-1 assay kit. Co-immunoprecipitation was used to determine the interaction of Drp1 and SMUO2/3. <b><i>Results:</i></b> SENP3 protein expression was obviously increased in renal tissues from the mouse model of LPS-induced AKI. Accordingly, SENP3 expression was upregulated in NRK-52E cells treated with LPS in a ROS-dependent manner in vitro. Knockdown of SENP3 dramatically ameliorated LPS-induced apoptosis of NRK-52E cells, whereas overexpression of SENP3 further aggravated LPS-induced apoptosis of NRK-52E cells. Mechanistically, SENP3 triggered Drp1 recruitment to mitochondria by increasing the deSUMOylation of Drp1. <b><i>Conclusion:</i></b> SENP3 aggravated renal tubular epithelial cell apoptosis in LPS-induced AKI via Drp1 deSUMOylation manner.
DOI: 10.6084/m9.figshare.21551829
title: Supplementary Material for: Reactivation of Multifocal Choroiditis Associated with Treatment in Latent Tuberculosis

description: Tuberculosis (TB) causes significant morbidity and mortality worldwide. Ocular manifestations of TB can lead to severe and sight threatening complications. Initiating treatment in ocular TB with anti-tubercular therapy (ATT) may be necessary to prevent long term visual complications. We present a case of the reactivation of bilateral multifocal choroiditis (MFC) in a patient with latent TB after commencing ATT. An asymptomatic 36-year-old Indian male was referred to an ophthalmologist with extensive inactive bilateral MFC close to his fovea despite no previous medical or ocular history. Latent TB was subsequently diagnosed via tuberculosis specific antigens and antibodies. After a period of stable observation without evidence of active eye or systemic disease, the patient was commenced on quadruple ATT with the aim of reducing the risk of visual loss with the MFC. However, after commencing treatment, MFC reactivation was observed. This settled with the addition of high dose oral prednisone. The steroid was slowly weaned and ceased with the cessation of ATT. There have been no further episodes of active choroiditis since treatment was ceased. Tuberculosis is a significant cause of mortality worldwide and ocular manifestations can cause severe and sight threatening complications in active and latent TB. The treatment of TB, however, may lead to further complications. We present the case of a visually asymptomatic patient with latent TB, with before and after fundal images, demonstrating the reactivation of the MFC after commencing ATT.
DOI: 10.6084/m9.figshare.21563769
title: Supplementary Material for: The Common Neural Mechanism of Somatic Symptoms of Depression and Anxiety Disorders: A Resting-State Functional Magnetic Resonance Imaging Study

description: <b><i>Introduction:</i></b> Somatic symptoms often occur as a manifestation of depression and anxiety. The subgenual anterior cingulate cortex (sgACC) has been shown to be closely related to both depression and anxiety and plays an important role in somatic symptoms. However, little is known regarding whether the abnormal function of the sgACC contributes to the common somatic symptoms of depression and anxiety. <b><i>Methods:</i></b> Resting-state functional connectivity (RSFC) analysis based on the seed of the sgACC was investigated in 23 major depressive disorder (MDD) patients with somatic symptoms, 20 generalized anxiety disorder (GAD) patients with somatic symptoms, and 22 demographically matched healthy controls (HCs). The severity of depression, anxiety, and somatic symptoms was assessed using the Hamilton Depression Rating Scale (HAMD), Hamilton Anxiety Rating Scale (HAMA), and the 15-item somatic symptom severity scale from the Patient Health Questionnaire (PHQ-15), respectively. An analysis of covariance analysis (ANCOVA) was conducted to determine RSFC alterations among GAD, MDD, and HC groups with age, gender, and head motion as covariates. Correlation analyses were conducted between the RSFC of the sgACC and PHQ-15. <b><i>Results:</i></b> The significantly different RSFC of right sgACC among the three groups was found in right STG, left cerebellum, and right postcentral. Post hoc analysis indicated that both MDD and GAD patients showed a decreased RSFC between the right sgACC and right STG than HCs, and both were negatively correlated with the PHQ-15 scores. <b><i>Conclusion:</i></b> The abnormally decreased RSFC of the sgACC and STG may be the underlying common mechanisms of depression and anxiety combined with somatic symptoms.
DOI: 10.6084/m9.figshare.21564108
title: Supplementary Material for: Postoperative Mortality Rate after Radical Cystectomy: A Systematic Review of Epidemiologic Series

description: <b><i>Introduction:</i></b> Mortality after radical cystectomy (RC) varies widely in the literature. In cohort studies, mortality rates can vary from as low as 0.5% in large-volume academic centers (2) to as high as 25% in developing countries series. This study aims to perform a systematic review of population-based studies reporting mortality after RC. <b><i>Methods:</i></b> A Systematic search was performed in Medline (PubMed®), Embase, and Cochrane for epidemiologic studies reporting mortality after RC. Institutional cohorts and those reporting mortality for specific groups within populations were excluded. Case series and non-epidemiologic series were also excluded. The aim of this review is to evaluate in-hospital mortality (IHM), 30-day mortality (30M), and 90-day mortality (90M). <b><i>Results:</i></b> Systematic search resulted in 42 papers comprising 449,661 patients who underwent RC from 1984 to 2017. Mean age was 66.1. Overall IHM, 30M, and 90M were 2.6%, 2.7%, and 4.9%, respectively, with 90M being 2.6 times higher than IHM on average. Lowest IHM was found in Canada and Australia (0.2% and 0.6%, respectively), while the highest IHM was 7.8% (Brazil). Canada and Spain showed the highest 90M (6.5%). 159,584 urinary diversions were analyzed, being mostly ileal conduits (76.8%). <b><i>Conclusions:</i></b> The majority of the studies available are from major developed economies with paucity of data in the developing world. 90M after RC tends to be at least twice as high as IHM. The knowledge of such epidemiologic data is vital to guide public policies, such as centralization, in order to reduce mortality.