cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.23501957.v2
title: N<sup>6</sup>-methyladenosine is required for efficient RNA synthesis of Ebola virus and other haemorrhagic fever viruses

description: N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) is one of the most abundant modifications of cellular RNA, where it serves various functions. m<sup>6</sup>A methylation of many viral RNA species has also been described; however, little is known about the m<sup>6</sup>A epitranscriptome of haemorrhagic fever-causing viruses like Ebola virus (EBOV). Here, we analysed the importance of the methyltransferase METTL3 for the life cycle of this virus. We found that METTL3 interacts with the EBOV nucleoprotein and the transcriptional activator VP30 to support viral RNA synthesis, and that METTL3 is recruited into EBOV inclusions bodies, where viral RNA synthesis occurs. Analysis of the m<sup>6</sup>A methylation pattern of EBOV mRNAs showed that they are methylated by METTL3. Further studies revealed that METTL3 interaction with the viral nucleoprotein, as well as its importance for RNA synthesis and protein expression, is also observed for other haemorrhagic fever viruses such as Junín virus (JUNV) and Crimean-Congo haemorrhagic fever virus (CCHFV). The negative effects on viral RNA synthesis due to loss of m<sup>6</sup>A methylation are independent of innate immune sensing, as METTL3 knockout did not affect type I interferon induction in response to viral RNA synthesis or infection. Our results suggest a novel function for m<sup>6</sup>A that is conserved among diverse haemorrhagic fever-causing viruses (i.e. EBOV, JUNV and CCHFV), making METTL3 a promising target for broadly-acting antivirals.
DOI: 10.25439/rmt.23557272
title: <strong>Supplemental Material for PhD Dissertation "Innovative Offsite Construction Uptake in the Housebuilding Sector: A Systemic Approach to Economic Justifiability for Volume Builders"</strong>

description: This document contains text excerpts captured from the literature as secondary data to develop the qualitative system dynamics model as well as two example coding tables. Table 1 shows the final list of research works selected for model development through a systematic paper selection procedure as described in chapter 3 of the thesis. Table 2 shows the initial causal links created based on the identified casual relationships. Table 3 shows an intermediate merging step (3rd iteration), where causal links are combined into more general links. For a detailed explanation of the model development process refer to chapter 3 of the thesis.
DOI: 10.25439/rmt.23557272.v1
title: <strong>Supplemental Material for PhD Dissertation "Innovative Offsite Construction Uptake in the Housebuilding Sector: A Systemic Approach to Economic Justifiability for Volume Builders"</strong>

description: This document contains text excerpts captured from the literature as secondary data to develop the qualitative system dynamics model as well as two example coding tables. Table 1 shows the final list of research works selected for model development through a systematic paper selection procedure as described in chapter 3 of the thesis. Table 2 shows the initial causal links created based on the identified casual relationships. Table 3 shows an intermediate merging step (3rd iteration), where causal links are combined into more general links. For a detailed explanation of the model development process refer to chapter 3 of the thesis.
DOI: 10.5281/zenodo.4897349
title: Simulated brainweb PET/MR data sets for denoising and deblurring

description: The data set consists of 20 subjects based on the normal anatomical models from the brainweb phantom. See https://brainweb.bic.mni.mcgill.ca/. For each subjectXX the data is organized as follows: image_0.nii.gz -&gt; (1st simulated "random" PET contrast) image_1.nii.gz -&gt; (2nd simulated "random" PET contrast) image_2.nii.gz -&gt; (3rd simulated "random" PET contrast) attenuation_image.nii.gz -&gt; (attenuation image) t1.nii.gz -&gt; (high resolution T1 MR) All data sets have a shape of (220,220,184) and a voxel size of 1mm x 1mm x 1mm and are provided in nifti format.<br> The T1 MR scans and antomical models used to create the ground truth PET images are taken from the BrainWeb: Simulated Brain Database. See: http://www.bic.mni.mcgill.ca/brainweb/<br> C.A. Cocosco, V. Kollokian, R.K.-S. Kwan, A.C. Evans : "BrainWeb: Online Interface to a 3D MRI Simulated Brain Database"<br> NeuroImage, vol.5, no.4, part 2/4, S425, 1997 -- Proceedings of 3-rd International Conference on Functional Mapping of the Human Brain, Copenhagen, May 1997.<br> R.K.-S. Kwan, A.C. Evans, G.B. Pike : "MRI simulation-based evaluation of image-processing and classification methods"<br> IEEE Transactions on Medical Imaging. 18(11):1085-97, Nov 1999.<br> R.K.-S. Kwan, A.C. Evans, G.B. Pike : "An Extensible MRI Simulator for Post-Processing Evaluation"<br> Visualization in Biomedical Computing (VBC'96). Lecture Notes in Computer Science, vol. 1131. Springer-Verlag, 1996. 135-140.<br> D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : "Design and Construction of a Realistic Digital Brain Phantom"<br> IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998
DOI: 10.5281/zenodo.4897350
title: Simulated brainweb PET/MR data sets for denoising and deblurring

description: The data set consists of 20 subjects based on the normal anatomical models from the brainweb phantom. https://brainweb.bic.mni.mcgill.ca/ For each subject the data is organized as follows: subjectXX mu.nii.gz -&gt; (attenuation image) t1.nii.gz -&gt; (high resolution and low noise T1 MR) sim_0 -&gt; first simulated PET acquisition true_pet.nii.gz -&gt; true tracer uptated osem_psf_counts_0.0E+00.nii.gz -&gt; OSEM recon of simulated noise free data osem_psf_counts_1.0E+07.nii.gz -&gt; OSEM recon of simulated noisy data (1e7 counts) -&gt; high noise level osem_psf_counts_5.0E+08.nii.gz -&gt; OSEM recon of simulated noisy data (5e8 counts) -&gt; low noise level sim_1 -&gt; second simulated PET acquisition osem_psf_counts_0.0E+00.nii.gz osem_psf_counts_1.0E+07.nii.gz osem_psf_counts_5.0E+08.nii.gz true_pet.nii.gz sim_2 -&gt; third simulated PET acquisition osem_psf_counts_0.0E+00.nii.gz osem_psf_counts_1.0E+07.nii.gz osem_psf_counts_5.0E+08.nii.gz true_pet.nii.gz All data sets have a shape of (256,256,258) and a voxel size of 1mm x 1mm x 1mm and are provided in nifti format. All PET acquisitions have different contrasts. PET data was simulated with a projector that approximates the geometry and resolution of the Siemens Biograph mMR. The T1 MR scans and antomical models used to create the ground truth PET images are taken from the <em>BrainWeb:</em> Simulated Brain Database. See: http://www.bic.mni.mcgill.ca/brainweb/ C.A. Cocosco, V. Kollokian, R.K.-S. Kwan, A.C. Evans : <em>"BrainWeb: Online Interface to a 3D MRI Simulated Brain Database"</em><br> NeuroImage, vol.5, no.4, part 2/4, S425, 1997 -- Proceedings of 3-rd International Conference on Functional Mapping of the Human Brain, Copenhagen, May 1997. R.K.-S. Kwan, A.C. Evans, G.B. Pike : <em>"MRI simulation-based evaluation of image-processing and classification methods"</em><br> IEEE Transactions on Medical Imaging. 18(11):1085-97, Nov 1999. R.K.-S. Kwan, A.C. Evans, G.B. Pike : <em>"An Extensible MRI Simulator for Post-Processing Evaluation"</em><br> Visualization in Biomedical Computing (VBC'96). Lecture Notes in Computer Science, vol. 1131. Springer-Verlag, 1996. 135-140. D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : <em>"Design and Construction of a Realistic Digital Brain Phantom"</em><br> IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998
DOI: 10.5281/zenodo.8067595
title: Simulated brainweb PET/MR data sets for denoising and deblurring

description: The data set consists of 20 subjects based on the normal anatomical models from the brainweb phantom. See https://brainweb.bic.mni.mcgill.ca/. For each subjectXX the data is organized as follows: image_0.nii.gz -&gt; (1st simulated "random" PET contrast) image_1.nii.gz -&gt; (2nd simulated "random" PET contrast) image_2.nii.gz -&gt; (3rd simulated "random" PET contrast) attenuation_image.nii.gz -&gt; (attenuation image) t1.nii.gz -&gt; (high resolution T1 MR) All data sets have a shape of (220,220,184) and a voxel size of 1mm x 1mm x 1mm and are provided in nifti format.<br> The T1 MR scans and antomical models used to create the ground truth PET images are taken from the BrainWeb: Simulated Brain Database. See: http://www.bic.mni.mcgill.ca/brainweb/<br> C.A. Cocosco, V. Kollokian, R.K.-S. Kwan, A.C. Evans : "BrainWeb: Online Interface to a 3D MRI Simulated Brain Database"<br> NeuroImage, vol.5, no.4, part 2/4, S425, 1997 -- Proceedings of 3-rd International Conference on Functional Mapping of the Human Brain, Copenhagen, May 1997.<br> R.K.-S. Kwan, A.C. Evans, G.B. Pike : "MRI simulation-based evaluation of image-processing and classification methods"<br> IEEE Transactions on Medical Imaging. 18(11):1085-97, Nov 1999.<br> R.K.-S. Kwan, A.C. Evans, G.B. Pike : "An Extensible MRI Simulator for Post-Processing Evaluation"<br> Visualization in Biomedical Computing (VBC'96). Lecture Notes in Computer Science, vol. 1131. Springer-Verlag, 1996. 135-140.<br> D.L. Collins, A.P. Zijdenbos, V. Kollokian, J.G. Sled, N.J. Kabani, C.J. Holmes, A.C. Evans : "Design and Construction of a Realistic Digital Brain Phantom"<br> IEEE Transactions on Medical Imaging, vol.17, No.3, p.463--468, June 1998
DOI: 10.34740/kaggle/dsv/5991695
title: Youtube Trending Video - Taiwan & Hong Kong
DOI: 10.6084/m9.figshare.23309462.v1
title: <strong>Hepatic lipidomics in mice with early-life antibiotic exposure and metabolic dysfunction-associated fatty liver disease (MAFLD)</strong>

description: Using an early-life antibiotic exposure model in BALB/c mice, we characterized the impact of prenatal and/or postnatal antibiotic exposures on the development of MAFLD in offspring through maternal administration of penicillin V. Pups were assigned into the four groups per their antibiotic exposure status. 5 pups born by dams with both prenatal and postnatal antibiotic exposure were grouped as AA group; 6 pups born by dams with only prenatal antibiotic exposure were grouped as AC group; 6 pups born by dams with only postnatal antibiotic exposure were grouped as CA group; 6 pups born by dams without maternal antibiotic exposure were grouped as CC group. All groups of pups underwent a 10% kcal fat standard chow diet period for five weeks before shifting to a 45% kcal high-fat diet for 15 weeks. Mice liver were harvested at the end of the experiment for nontargeted lipidomics. 25 mg of mice liver was weighted, mixed with 800 μL of dichloromethane: methanol (3:1, v/v) and homogenized for lipid extraction. The homogenate was centrifuged and the supernatant was taken for lyophilization and reconstitution. A LC-MS system consisting of Waters 2D UPLC (waters, USA) and Q Exactive high resolution mass spectrometer (Thermo Fisher Scientific, USA). Untargeted lipidomics data is deposited in this repository.
DOI: 10.5281/zenodo.8021197
title: WBGT Daily Maximum, Mean, Minimum 1979-2021 (Brimicombe WBGT method, from hourly ERA5 data)

description: Wet Bulb Globe Temperature, or WBGT, calculated using the method of Brimicombe (GeoHealth: https://doi.org/10.1029/2022GH000701). Using Python Xarray, daily statistics (mean, max, min) from hourly WBGT data were saved. WBGT calculated from hourly ERA5 data (near-surface, single level variables: t2m, d2m, 10m u+v wind vectors, mrt) Jan 1 1979 to Dec 31 2021. Daily statistics are saved in Netcdf (nc) files in annual slices, then annual files are saved in ~5 to 20 year groups within the zip files. Methodology from Brimicombe et al., 2023 (GeoHealth: https://doi.org/10.1029/2022GH000701), using the Thermofeel Python package shared by the ECMWF team on on Github.
description: {"references": ["https://doi.org/10.1029/2022GH000701", "https://doi.org/10.1002/qj.3803", "https://github.com/ecmwf-projects/thermofeel/blob/master/thermofeel/thermofeel.py"]}
DOI: 10.5281/zenodo.8021196
title: WBGT Daily Maximum, Mean, Minimum 1979-2021 (Brimicombe WBGT method, from hourly ERA5 data)

description: Wet Bulb Globe Temperature, or WBGT, calculated using the method of Brimicombe (GeoHealth: https://doi.org/10.1029/2022GH000701). Using Python Xarray, daily statistics (mean, max, min) from hourly WBGT data were saved. WBGT calculated from hourly ERA5 data (near-surface, single level variables: t2m, d2m, 10m u+v wind vectors, mrt) Jan 1 1979 to Dec 31 2021. Daily statistics are saved in Netcdf (nc) files in annual slices, then annual files are saved in ~5 to 20 year groups within the zip files. Methodology from Brimicombe et al., 2023 (GeoHealth: https://doi.org/10.1029/2022GH000701), using the Thermofeel Python package shared by the ECMWF team on on Github.
description: {"references": ["https://doi.org/10.1029/2022GH000701", "https://doi.org/10.1002/qj.3803", "https://github.com/ecmwf-projects/thermofeel/blob/master/thermofeel/thermofeel.py"]}
DOI: 10.5281/zenodo.8067678
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Sverre Aaseth, http://www.wikidata.org/entity/Q117221280. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q117221280
DOI: 10.5281/zenodo.8067677
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Sverre Aaseth, http://www.wikidata.org/entity/Q117221280. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q117221280
DOI: 10.34740/kaggle/dsv/5991907
title: Pypi sython panda
DOI: 10.5281/zenodo.8067688
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roland Allemand, http://www.wikidata.org/entity/Q44422790. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q44422790
DOI: 10.5281/zenodo.8067687
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Roland Allemand, http://www.wikidata.org/entity/Q44422790. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q44422790
DOI: 10.34740/kaggle/dsv/5991661
title: Unique Coronary Artery Disease Prediction Dataset
DOI: 10.5281/zenodo.8067690
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Rudolf Altevogt, http://www.wikidata.org/entity/Q55008289. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q55008289
DOI: 10.5281/zenodo.8067689
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Rudolf Altevogt, http://www.wikidata.org/entity/Q55008289. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q55008289
DOI: 10.5281/zenodo.8067694
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gerda Jane Hillegonda Amshoff, http://www.wikidata.org/entity/Q5878463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5878463
DOI: 10.5281/zenodo.8067693
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gerda Jane Hillegonda Amshoff, http://www.wikidata.org/entity/Q5878463. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5878463
DOI: 10.5281/zenodo.8067697
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Taracad Narayanan Ananthakrishnan, http://www.wikidata.org/entity/Q28921545. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q28921545
DOI: 10.5281/zenodo.8067696
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Taracad Narayanan Ananthakrishnan, http://www.wikidata.org/entity/Q28921545. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q28921545
DOI: 10.5281/zenodo.8067699
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Herbert Andrewartha, http://www.wikidata.org/entity/Q5733462. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5733462
DOI: 10.5281/zenodo.8067698
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Herbert Andrewartha, http://www.wikidata.org/entity/Q5733462. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5733462
DOI: 10.5281/zenodo.8067703
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by José Maria Antunes, http://www.wikidata.org/entity/Q117672570. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q117672570
DOI: 10.5281/zenodo.8067702
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by José Maria Antunes, http://www.wikidata.org/entity/Q117672570. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q117672570
DOI: 10.5281/zenodo.8067705
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gilbert Archey, http://www.wikidata.org/entity/Q5560890. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5560890
DOI: 10.5281/zenodo.8067704
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Gilbert Archey, http://www.wikidata.org/entity/Q5560890. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q5560890
DOI: 10.5281/zenodo.8067707
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Pedro Martin José Arens, http://www.wikidata.org/entity/Q21505316. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21505316
DOI: 10.5281/zenodo.8067706
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Pedro Martin José Arens, http://www.wikidata.org/entity/Q21505316. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21505316
DOI: 10.5281/zenodo.8067715
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Atasrip, http://www.wikidata.org/entity/Q108403395. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q108403395
DOI: 10.5281/zenodo.8067714
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Atasrip, http://www.wikidata.org/entity/Q108403395. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q108403395
DOI: 10.5281/zenodo.8067718
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Attems, http://www.wikidata.org/entity/Q89314. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q89314
DOI: 10.5281/zenodo.8067717
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Carl Attems, http://www.wikidata.org/entity/Q89314. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q89314
DOI: 10.5281/zenodo.8067720
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Joseph Peter Audebert, http://www.wikidata.org/entity/Q14541292. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q14541292
DOI: 10.5281/zenodo.8067719
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Joseph Peter Audebert, http://www.wikidata.org/entity/Q14541292. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q14541292