cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t4wvpy29fz.4
title: An Automated and Unbiased Grain Segmentation Method based on Directional Reflectance Microscopy, Wittwer et al.

description: This repository contains the data and code necessary to reproduce the results presented in our publication. Abstract: Identifying individual grains from sectioned polycrystalline metals is a foundational task of microstructure analysis. However, traditional grain segmentation methods applied to optical micrographs may suffer from the lack of optical contrast between grains and require the manual selection of adjustable parameters to achieve acceptable segmentation results. We propose an alternative method which takes advantage of a multi-angle optical microscopy technique termed directional reflectance microscopy. By combining dimensionality reduction, similar-dissimilar classification, and multi-region merging of surface directional reflectance, our method enables fully automated and reliable grain segmentation of polycrystalline surfaces. We apply our method to metal samples with different crystal structures and grain orientation distributions. Our results suggest applicability of the method to a wide range of microstructures, enabling a more objective, robust, and universal characterization of polycrystalline metals.
DOI: 10.17632/vpxprvpz22.2
title: Condom use dataset

description: Dataset for a survey of 286 University students on attitudes towards condom use, hyperopia, Ubuntu and Self control
DOI: 10.17632/3rtdhcrwjg.3
title: An organelle-tethering mechanism couples flagellation to cell division in bacteria

description: Original immunoblot and motility assay images corresponding to the manuscript.
DOI: 10.17632/kz5pn2whyd.2
title: Family of experiments MDD VS Traditional

description: Family of experiments to compare MDD VS a Traditional Method. Research questions • RQ1: Is software quality affected by MDD? Measured through columm "Accuracy_simple_problem" and "Accuracy_simple_problem" • RQ2: Is a developer’s effort developing a system affected by MDD? Measured through columm "Time_simple_problem" • RQ3: Is a developer’s satisfaction developing a system affected by MDD? Measured through columm "PEOU", PU", "ITU" Factors are is the Method, columm "Method" Block vairable is the problem, columm "Problem" Moderator variables are the course where each replication was conducted (columm "Replication") and the MDD tool used (columm "MDD_tool")
DOI: 10.17632/c52p5x5zxs.2
title: Acidic pH is Required for the Multilamellar Assembly of Skin Barrier Lipids in Vitro

description: Lipid membrane remodeling belongs to the most fundamental processes in the body. The skin barrier lipids, which are ceramide-dominant and highly rigid, must attain an unusual multilamellar nanostructure with long periodicity to restrict water loss and prevent the entry of potentially harmful environmental factors. Our data suggest that the skin “acid mantle”, apart from regulating enzyme activities and keeping away pathogens, may also be a prerequisite for the multilamellar assembly of the skin barrier lipids. Atomic force microscopy on monolayers composed of synthetic or human SC lipids showed multilayer formation (ca 10 nm step height) in an acidic but not neutral environment. X-ray diffraction, Fourier-transform infrared spectroscopy, and permeability studies showed markedly altered lipid nanostructure and increased water loss at neutral compared to acidic pH. These findings are consistent with the altered organization of skin lipids and increased transepidermal water loss in conditions with inadequate skin acidification, e.g., in neonates, elderly, and patients with atopic dermatitis.
DOI: 10.17632/s5mzb2zyzv.2
title: LINF_360016500

description: ribosomal protein L24; Leishmania infantum
DOI: 10.17632/xm23f9mkdx.2
title: Data for Comparative analysis of mites genome reveals positive selection of diet adaptation

description: Genome annotation for mites and serpin family tree
DOI: 10.17632/yjsh4wkb88.2
title: Bangladeshi nurses' perceived preparedness for disasters
DOI: 10.17632/8jyg659twy.3
title: Ex-Offender Variables used by Doleac with additional 6 variables added with DePaul replication

description: After baseline data were collected, participants were assessed every 6 months for the next 24 months. There were 270 participants, with 90 randomly assigned to each of the three conditions (more details about the characteristics of the sample and the methods are in Jason et al., 2015). We then tried to replicate Doleac et al.’s (2020) difference-in-differences approach, as we used their method in the current study, and we selected a baseline variable that more validly measures criminal justice involvement. In the Doleac et al. (2020) article, the replicators had found that over the past 30 days at baseline, those in the recovery home had 2.54 fewer days incarcerated than controls (means of 1.2 versus 3.7 days incarcerated for the recovery home versus the controls). As mentioned in the introduction, we found conceptual and methodological problems with this baseline measure. In contrast, in the current study, we employed a more valid variable collected at the start of the study, which involved the length of time of the most recent incarceration, and on this measure, recovery home residents evidenced 76.80 more days incarcerated than controls (Table 1 in Jason et al., 2015 indicated means of 16.59 versus 14.03 months for most recent incarceration for recovery home versus controls-- months were calculated into days for the current study). As indicated in the introduction, the baseline variable was changed in this current study to length of time of the most recent incarceration, to reflect what we considered to be a more valid measure of baseline criminal justice involvement. In addition, we investigated two different outcome variables for the waves following baseline. We used the outcome variable employed by Doleac et al. (2018), days incarcerated over the past 30 days, for each of the 4 follow-up assessments that occurred every 6 months. But we also used another outcome measure, a variable involving total months incarcerated over the assessment periods (we recoded months into their respective days for this variable as well as the baseline months of most recent incarceration). This second outcome variable used the full period rather than the final 30-days between each 6-month wave. In doing so, we compiled a more robust method for assessing incarceration activity in between each wave by asking participants how long they have been detained since we last interviewed them. In a study that can be obtained from Leonard Jason, our group assessed how changing the baseline measure of criminal justice involvement alters the difference-in-differences findings reported by Doleac et al. (2020). As their findings focused on the treatment-on-the-treated (TOT) effects (those who participated in the recovery homes for at least 30 days), we also focus on these results that are in a paper that can be obtained from Leonard Jason.
DOI: 10.17632/9rbpvp8rkt.2
title: Chemiluminescence intensities of excited radicals in ammonia-methane-air twinFlames
DOI: 10.17632/gfkkvvm7w8.3
title: Tahoe Rain or Snow Citizen Science Precipitation Phase Data, Winter 2020

description: The CSV file contains precipitation phase observations and other related data from the Tahoe Rain or Snow citizen science project. Between January and May 2020 volunteers reported 1003 observations of precipitation phase (rain, snow, or mixed). Please see the Arienzo et al. (2021) manuscript for details on data collection and processing. Arienzo MM, Collins M and Jennings KS (2021) Enhancing Engagement of Citizen Scientists to Monitor Precipitation Phase. Front. Earth Sci. 9:617594. doi: 10.3389/feart.2021.617594. https://www.frontiersin.org/articles/10.3389/feart.2021.617594/full The README file contains column names and descriptions.
DOI: 10.17632/9fvmkxx5kp.2
title: Data on Land Tenure and Food Security

description: This dataset presents data collected from the household survey in Northern Nigeria to examine land tenure and property rights among smallholder rice farmers and the influence it has on household food security. Data collection was by personal interviews of adult members of the farmers’ households, focusing on the households’ socio-economics, United States Department of Agriculture’- 18 Household Food Security questions for households, land titling status, and land tenure type on farmland cultivated during the 2016/17 farming season.
DOI: 10.17632/t2b295b4gc.2
title: Long-term gene expression changes in irradiated male and female rhesus macaque

description: Purpose: Long-term transcriptome changes can be expected in survivors after lethal irradiation. We aimed to characterize these changes in males and females and after different cytokine treatments. Material and Methods: Peripheral blood was drawn in male and female rhesus macaque (n=142), which survived whole-body exposure with 700 cGy (LD66/60). Peripheral whole blood was drawn pre-exposure and before sacrificing the surviving animals after 60 days. Results: We evaluated gene expression in a three-phase study design where phase I was a whole-genome screening (NGS) for mRNAs using five pre- and post-exposure RNA samples (n=20). Differential gene expression (DGE) was calculated separately for each sex between samples of survivors and pre-exposure samples, utilized as the reference. Altogether 1,243 up- and down-regulated genes were identified. Altogether 37 candidate mRNAs were chosen for validation in phase II using the remaining samples (n=117) and utilizing qRT-PCR. Altogether 17 genes showed significant or borderline significant (t-test) DGE in groups of untreated or treated males and females, but nine most promising genes (CD248, EDAR, FAM19A5, GAL3ST4, GCNT4, HBG2/1, LRRN1, NOG, SYT14). For phase III, we validated our 41 rhesus macaque candidate genes with results from an earlier conducted study on male baboons. Altogether 34% (14 out of 41) genes showed a concordantly DGE in males of both species (DGE defined as (FC) &gt; |1.5|). Conclusions: 60 days after radiation exposure, we identified (1) cytokine treatment independent long-term transcriptional changes, (2) females with almost twice as much deregulated genes appeared more radio-responsive than males on gene expression level but interestingly did not show a correlation between hematopoietic nadirs and sex in corresponding clinical data and (3) Panther analysis revealed a strong association with immunological processes as well as the WNT pathway for both sexes, highlighting a possible correlation of secondary malignancy development due to immunological alterations.
DOI: 10.17632/xktfcbsw4t.2
title: A Computational Framework for Assessment and Design of Sustainable and Circular Economies - Dataset

description: Jupyter Notebook for Illustrative Example Analysis and Synthesis problem in the paper: "Towards Sustainable and Circular Economy: A computational framework for Assessment and Design", J. of Cleaner production 2020. The notebook is based on the Julia Language, and operates with JuMP optimization package. Readme text for operating the notebook is attached within the dataset.
DOI: 10.17632/3sncj38wds.3
title: LC-MS dataset showing changes in MDSCs lipid species following FATP2 inhibition

description: The dataset is part of the supplementary data for the manuscript “Regulation of ROS in myeloid-derived suppressor cells through targeting fatty acid transport protein 2 enhanced anti-PD-L1 tumor immunotherapy”. The raw data reveals changes in different lipid species present in MDSCs isolated from melanoma-bearing mice treated with either vehicle (PBS) or fatty acid transport protein 2 inhibitor (lipofermata). Lipids were extracted from splenic MDSCs using methyl-tert-butyl ether (MBTE). Data were obtained by subjecting lipid extracts from splenic MDSCs to reversed-phase high-performance liquid chromatography (HPLC) coupled to a Q-Exactive mass spectrometer. Figures S1 and S2 showed the transformed raw data for negative and positive mode full scan identified by lipid search in MDSCs from mice receiving the vehicle. On the other hand, Figures S3 and S4 showed the negative and positive mode datasets respectively for MDSCs from lipofermata-treated mice.
DOI: 10.17632/fxhjmmtrbv.2
title: LINF_090016900

description: hypothetical protein - conserved; Leishmania infantum
DOI: 10.17632/gf8pnt826y.2
title: Flor et al., Top1-HNE, 2020

description: Data related to 2020 manuscript by Flor et. al submitted to Cell Chemical Biology. Data supports hypothesis that Top1-targeting chemotherapeutic poisons induce off-target effects in tumor cells by generating reactive oxygen species (ROS). ROS production results in lipid peroxidation (LPO) and subsequent generation of lipid-derived electrophiles (LDEs) including 4-hydroxy-2-nonenal (HNE). We show that HNE and other LDEs are able to post-translationally modify topoisomerase 1, inhibit its enzymatic activity, and induce Top1-DNA covalent complexes in tumor cells. Also discussed are cellular effects of Top1 inhibition by various Top1 poisons including accelerated senescence in tumor cells, which may be mediated by Top1-HNE adduct formation.
DOI: 10.17632/js2nzwf5md.3
title: Dataset for "XRF and XRPD data sets in ternary mixtures with high level micro-absorption and/or preferred orientations problems for phase quantification analysis"

description: XRF and XRPD data were collected on four different mixture experimental domain, each containing one or more common issues for phase quantification: micro-absorption and preferred orientations. Simplex-Centroid experimental design was used to homogeneously explore the experimental domain. Microabsorption and preferred orientations were included in a controlled way, by choosing the appropriate components each time. The datasets are respectively: - D1: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and sieved graphite (MM: 12.01 g/mol, density: 2.23 g/cm^3, Z of the heaviest element: 6) with a particle size lower than 90 micrometers (non-oriented). - D2: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and sieved graphite (MM: 12.01 g/mol, density: 2.23 g/cm^3, Z of the heaviest element: 6), divided in about 70 % sieved graphite with a particle size lower than 90 micrometers (non-oriented) and 30% sieved graphite with particle size higher than 90 micrometers (oriented). - D3: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and zinc acetate (MM: 219.528 g/mol, density: 1.74 g/cm^3, Z of the heaviest element: 30). - D4: A three component mixture containing bismuth oxide (MM: 208.980 g/mol, density: 8.93 g/cm^3, Z of the heaviest element: 83), barium sulfate (MM: 137.327 g/mol, density: 4.48 g/cm^3, Z of the heaviest element: 56) and urea (MM: 60.06 g/mol, density: 1.32 g/cm^3, Z of the heaviest element: 8). The aim of this datasets is to provide an open-source collection data on which perform quantification analysis by both traditional and innovative methods. More informations are detailed in the data paper "XRF and XRPD data sets in ternary mixtures with high level micro-absorption and/or preferred orientations problems for phase quantification analysis".
DOI: 10.17632/zxztfzpbrf.2
title: Assessment of the applicability of COI and 16S gene regions for molecular genetic diagnostics of the species Bactrocera tryoni (Froggatt)

description: The Queensland fruit fly Bactrocera (Bactrocera) tryoni (Froggatt, 1897) is a member of the Tephritidae family and is a serious pest of a wide range of fruit and vegetable crops in Australia. The object of this study, Bactrocera tryoni, belongs to the complex of B. tryoni species, which, in addition to it, includes the species Bactrocera aquilonis (May, 1965), Bactrocera neohumeralis (Hardy, 1951), and Bactrocera melas (Perkins & May, 1949). Since these species are morphologically very similar and some may infect similar products, there is a need for molecular genetic diagnostic methods that will reliably distinguish these species from other species and among themselves. According to the obtained data on the COI gene generally in the sample matrix, there is a hiatus - a gap between intra- and interspecific distances. However, the species B. tryoni, B. aquilonis, and B. neohumeralis on the dendrogram form clades corresponding to the same species, therefore, it is impossible to distinguish them using the sequences of the COI gene region. However, based on this sequence, it is possible to narrow down the identification by molecular genetic methods to these three species, since they are well separated from other studied species. According to the graph of the distribution of pairwise genetic distances for the 16S gene, there is a lower variability than for the COI gene. On the dendrogram, the species B. tryoni, B. aquilonis, and B. neohumeralis form the one clade, but other species formed separate clades. It is necessary to increase the number of 16S gene sequences in the sample for each species. Thus, based on the COI gene sequence, it is possible to separate the species B. tryoni, B. aquilonis, and B. neohumeralis from other species of the genus Bactrocera studied by us. To study the relationships within the complex of B. tryoni species and search for a gene sequence by which it will be possible to reliably differentiate the B. tryoni species, another, possibly more rapidly evolving gene is required.
DOI: 10.17632/mxztrypkjc.3
title: In2Sight_Chip_Validation

description: Data related to the validation of the design of the in2sight chip in vitro (WP
DOI: 10.5281/zenodo.4590269
title: Mächtekongresse 1818-1822. Digital Edition

description: First release of the combined web application and TEI data for the <em>Mächtekongresse 1818–1822 Digital edition</em> otherwise available through https://maechtekongresse.acdh.oeaw.ac.at/ and https://id.acdh.oeaw.ac.at/maechtekongresse.
DOI: 10.5281/zenodo.4590268
title: Mächtekongresse 1818-1822. Digital Edition

description: First release of the combined web application and TEI data for the <em>Mächtekongresse 1818–1822 Digital edition</em> otherwise available through https://maechtekongresse.acdh.oeaw.ac.at/ and https://id.acdh.oeaw.ac.at/maechtekongresse.
DOI: 10.5281/zenodo.4590263
title: Regional Surface Mass Balance of Antarctica (1981-2016) estimated from five high resolution Regional Climate Models

description: We compare the mean annual surface mass balance (SMB) of five different regional climate models (RCMs) (COSMO-CLM2, HIRHAM5, MAR3.10, MetUM and RACMO2.3p2) forced by ERA-Interim reanalysis over Antarctica for the period 1981-2016. This dataset is broken down over the grounded Antarctic ice sheet into three different regions (East Antarctica, West Antarctica and the Antarctic Peninsula). We also give the ensemble mean and the forcing climate reanalysis SMB. For questions or additional data please contact the authors.
DOI: 10.5281/zenodo.4590262
title: Regional Surface Mass Balance of Antarctica (1981-2016) estimated from five high resolution Regional Climate Models

description: We compare the mean annual surface mass balance (SMB) of five different regional climate models (RCMs) (COSMO-CLM2, HIRHAM5, MAR3.10, MetUM and RACMO2.3p2) forced by ERA-Interim reanalysis over Antarctica for the period 1981-2016. This dataset is broken down over the grounded Antarctic ice sheet into three different regions (East Antarctica, West Antarctica and the Antarctic Peninsula). We also give the ensemble mean and the forcing climate reanalysis SMB. For questions or additional data please contact the authors.
DOI: 10.5255/ukda-sn-854701
title: Technical Evaluation of SMETER Technologies Project Phase 2 dataset: Temperature, Relative Humidity, Dwelling Information, and Local Weather, 2019-2020

description: The dataset comprises gas and electricity consumption, indoor air temperature, and indoor relative humidity measured in 15 different dwellings, local weather data, a dwelling survey, and an occupant survey recorded during Phase 2 of the TEST Project. Refer to the README for data file structure. Heat transfer coefficients (HTC) measured by co-heating test, and fan pressurisation results have been omitted from this dataset to allow for blind prediction of HTC.
DOI: 10.5281/zenodo.4590253
title: JPS-daprinfo: A Dataset for Japanese Dialog Act Analysis and People-related Information Detection

description: We conducted a labeling work on a spoken Japanese dataset (I-JAS) for the text classification, which contains 50 interview dialogues of two-way Japanese conversation that discuss the participants' past present and future. Each dialogue is 30 minutes long. From this dataset, we selected the interview dialogues of native Japanese speakers as the samples. Given the dataset, we annotated sentences with 13 labels. The labeling work was conducted by native Japanese speakers who have experience with data annotation. labels: ssi/osi:subjective information soi/ooi:objective information op/sp:plan qu:question ap:apology th:thanking cc:topic changing/closing ag:agreement ds:disagreement re:request pr:proposal su:summarize/reformulate th:other
DOI: 10.5281/zenodo.4590252
title: JPS-daprinfo: A Dataset for Japanese Dialog Act Analysis and People-related Information Detection

description: We conducted a labeling work on a spoken Japanese dataset (I-JAS) for the text classification, which contains 50 interview dialogues of two-way Japanese conversation that discuss the participants' past present and future. Each dialogue is 30 minutes long. From this dataset, we selected the interview dialogues of native Japanese speakers as the samples. Given the dataset, we annotated sentences with 13 labels. The labeling work was conducted by native Japanese speakers who have experience with data annotation. labels: ssi/osi:subjective information soi/ooi:objective information op/sp:plan qu:question ap:apology th:thanking cc:topic changing/closing ag:agreement ds:disagreement re:request pr:proposal su:summarize/reformulate th:other
DOI: 10.21227/6g2x-vy43
title: GFE date

description: In large-scale multi-objective optimization, as the decision space's dimensionality increases, evolutionary algorithms can easily fall into an optimal local state. Therefore, how to prevent the algorithm from falling into a local optimum and quickly converge to the Pareto front is a particularly challenging problem. In order to solve the problem, this paper proposes a grid-based fuzzy evolution large-scale multi-objective optimization framework, which divides the entire evolution process into two main stages: fuzzy evolution and precise evolution. In the first stage, many similar original solutions will be fuzzy into the same fuzzy solution. The purpose is to enhance the population's solutions so fuzzy evolution can prevent the algorithm from falling into the local optimum. The second stage aims to find a high-precision solution so that it is closer to the true Pareto front. This paper conducts experiments on various large-scale multi-objective problems with as many as 500 to 5000 decision variables. Experimental results show that in large-scale multi-objective optimization, the framework proposed in this paper can significantly improve the performance and computational efficiency of multi-objective optimization algorithms.
DOI: 10.6084/m9.figshare.12000255.v3
title: Raw data of gut microbiota in 1month, 3months, and 6months infants

description: This data was used in a study on effect of maternal antibiotics exposure on infants' gut microbiota.