cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15490006
title: Dataset for "Lead, Locked Away: Porous Zr-Phytate Coordination Polymer for Rapid and Selective Removal of Pb from Water"

description: Coordination polymers (CPs) often suffer from poor hydrolytic and chemical stability, limiting their use in water remediation. We report a highly robust, amorphous coordination polymer synthesized from Zr4+ and bio-available phytic acid, featuring stable Zr–O–P bonds that resist degradation even in 10 M HCl, HNO3, and H2SO4. The material forms a micro-mesoporous network under mild conditions in water and consists of mononuclear  ZrO6 units bridged by phosphate groups. Zr-Phytate exhibits excellent Pb2+ removal performance, maintaining high efficiency even in the presence of excess competing ions. Its exceptional chemical durability allows efficient regeneration using 1 M HCl, with no detectable leaching of Zr or phytic acid and no loss of structural integrity over multiple cycles. Compared to commercial ion-exchange resins, Zr-Phytate offers superior selectivity and reusability. This work demonstrates the importance of designing stable coordination polymers and highlights the promise of zirconium-phosphate networks for applications in water remediation.
DOI: 10.7910/dvn/wbxhg8
title: Raw dataset

description: Analyzed genomic data from ovarian cancer samples to identify key somatic mutations and pathways linked to potential biomarkers and therapeutic targets.
DOI: 10.15468/dl.8t8ds4
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Philodendron leyvae"
 ]
}

 The dataset includes 42 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051002-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.awr2dd
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Buddleja davidii",
 "HasCoordinate is true",
 "Country is Hungary"
 ]
}

 The dataset includes 35 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051001-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cq26va
title: Occurrence Download

description: A dataset containing 761400 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample)",
 "Continent is one of (Europe, North America)",
 "CoordinateUncertaintyInMeters 0.0-100.0",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salmo salar",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 761400 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0050982-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jtym55
title: Occurrence Download

description: A dataset containing 223 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cedrus brevifolia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 223 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051003-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26093566.v2
title: Data and Code Repository for: Destabilized host-parasite dynamics in newly founded populations

description: This study describes the eco-evolutionary dynamics of stickleback and their tapeworm parasites following the experimental introduction of fish into nine lakes. See README text file for details<br>Abstract: When species disperse into previously unoccupied habitats, new populations encounter unfamiliar species interactions such as altered parasite loads. Theory predicts that newly founded populations should exhibit destabilized eco-evolutionary fluctuations in infection rates and immune traits. However, to understand founder effects biologists typically rely on retrospective studies of range expansions, missing early-generation infection dynamics. To remedy this, we experimentally founded whole-lake populations of threespine stickleback. Infection rates were temporally stable in native source lakes. In contrast, newly founded populations exhibit destabilized host-parasite dynamics: high starting infection rates led to increases in a heritable immune trait (peritoneal fibrosis), suppressing infection rates. The resulting temporal auto-correlation between infection and immunity suggest that newly founded populations can exhibit rapid host-parasite eco-evolutionary dynamics.<br>
DOI: 10.5281/zenodo.11506546
title: One mother for two species: obligate cross-species cloning in ants

description: This repository contains data for the article "One mother for two species: obligate cross-species cloning in ants".

The content of all folders contained in the ibericusRepository.tar.gz archive is described below.

# Reference genomesThe referenceGenomes folder contains the reference genomes of each species used for fig S7 (time-calibrated phylogeny) with a quast 5.2 report containing various metrics of assembly quality.

# MCMCtree analysesThe mcmctree_dating folder contains the tree with calibrations, and two folders containing the two mcmctree runs with all input and output files.

# Snakemake pipelineThe pipelineSnakemake folder contains a minimal snakefile describing analyses from reads (fastq) to alignments for phylogenetic analyses (including mapping, snp calling, separating maternal/paternal alleles of hybrid individuals, alignments). This folder is not sufficient to re-run all analyses as data are not included in the folder (reads available on GenBank).- the file dag.pdf contains a visual graph of the pipeline connecting the snakemake recipes described in the snakefile. - The file pipelineConda.yaml contains all informations necessary to set up a conda environment with all dependencies and program versions for running analyses (use the command "./mamba_setup.sh pipelineConda.yaml" to setup the corresponding conda environment named pipelineConda).- script folder contains various home-made python script required in the Snakefile.- motherfile.my and runfile.my are config files required by the Snakefile.

# VCF fileThe mainVCF folder contain the vcf file containing all SNPs (before filtering), i.e. the major intermediary file from the snakemake pipeline. Mibericus_genome_ana.busco.fasta contains the BUSCO genes used as reference for mapping all individuals in order to produce the VCF file.

# Phylogenetic analysesThe iqtree_phylogenies folder contains the alignments and resulting phylogenetic tree of figS1, figS2, figS3 and figS7.
DOI: 10.5281/zenodo.11506545
title: One mother for two species: obligate cross-species cloning in ants

description: This repository contains data for the article "One mother for two species: obligate cross-species cloning in ants".

The content of all folders contained in the ibericusRepository.tar.gz archive is described below.

# Reference genomesThe referenceGenomes folder contains the reference genomes of each species used for fig S7 (time-calibrated phylogeny) with a quast 5.2 report containing various metrics of assembly quality.

# MCMCtree analysesThe mcmctree_dating folder contains the tree with calibrations, and two folders containing the two mcmctree runs with all input and output files.

# Snakemake pipelineThe pipelineSnakemake folder contains a minimal snakefile describing analyses from reads (fastq) to alignments for phylogenetic analyses (including mapping, snp calling, separating maternal/paternal alleles of hybrid individuals, alignments). This folder is not sufficient to re-run all analyses as data are not included in the folder (reads available on GenBank).- the file dag.pdf contains a visual graph of the pipeline connecting the snakemake recipes described in the snakefile. - The file pipelineConda.yaml contains all informations necessary to set up a conda environment with all dependencies and program versions for running analyses (use the command "./mamba_setup.sh pipelineConda.yaml" to setup the corresponding conda environment named pipelineConda).- script folder contains various home-made python script required in the Snakefile.- motherfile.my and runfile.my are config files required by the Snakefile.

# VCF fileThe mainVCF folder contain the vcf file containing all SNPs (before filtering), i.e. the major intermediary file from the snakemake pipeline. Mibericus_genome_ana.busco.fasta contains the BUSCO genes used as reference for mapping all individuals in order to produce the VCF file.

# Phylogenetic analysesThe iqtree_phylogenies folder contains the alignments and resulting phylogenetic tree of figS1, figS2, figS3 and figS7.

# SI4This folder group several sub-folders which are analyses from supplemental information section 4, where we try to better understand the genetic differentiation and gene flow history of the clonal and wild-type lineage of M. structor.
DOI: 10.5281/zenodo.15175715
title: One mother for two species: obligate cross-species cloning in ants

description: This repository contains data for the article "One mother for two species: obligate cross-species cloning in ants".

The content of all folders contained in the ibericusRepository.tar.gz archive is described below.

# Reference genomesThe referenceGenomes folder contains the reference genomes of each species used for fig S7 (time-calibrated phylogeny) with a quast 5.2 report containing various metrics of assembly quality.

# MCMCtree analysesThe mcmctree_dating folder contains the tree with calibrations, and two folders containing the two mcmctree runs with all input and output files.

# Snakemake pipelineThe pipelineSnakemake folder contains a minimal snakefile describing analyses from reads (fastq) to alignments for phylogenetic analyses (including mapping, snp calling, separating maternal/paternal alleles of hybrid individuals, alignments). This folder is not sufficient to re-run all analyses as data are not included in the folder (reads available on GenBank).- the file dag.pdf contains a visual graph of the pipeline connecting the snakemake recipes described in the snakefile. - The file pipelineConda.yaml contains all informations necessary to set up a conda environment with all dependencies and program versions for running analyses (use the command "./mamba_setup.sh pipelineConda.yaml" to setup the corresponding conda environment named pipelineConda).- script folder contains various home-made python script required in the Snakefile.- motherfile.my and runfile.my are config files required by the Snakefile.

# VCF fileThe mainVCF folder contain the vcf file containing all SNPs (before filtering), i.e. the major intermediary file from the snakemake pipeline. Mibericus_genome_ana.busco.fasta contains the BUSCO genes used as reference for mapping all individuals in order to produce the VCF file.

# Phylogenetic analysesThe iqtree_phylogenies folder contains the alignments and resulting phylogenetic tree of figS1, figS2, figS3 and figS7.

# SI4This folder group several sub-folders which are analyses from supplemental information section 4, where we try to better understand the genetic differentiation and gene flow history of the clonal and wild-type lineage of M. structor.
DOI: 10.15468/dl.uewdeq
title: Occurrence Download

description: A dataset containing 1439132 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((19.36039 33.80266,30.23971 33.87381,29.38307 37.96511,28.18378 41.32797,26.89882 43.22918,24.15757 43.72646,21.50199 43.60252,19.1034 41.96808,17.9041 41.32797,18.24676 36.46435,19.36039 33.80266))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (NE, DD, NT, VU, EN, CR)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 1439132 records from 1269 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010936-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13291069
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.yajk7y
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hydropsalis anomala (Gould, 1838)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000085-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x6d62b
title: Occurrence Download

description: A dataset containing 1436 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Harpia harpyja (Linnaeus, 1758)"
 ]
}

 The dataset includes 1436 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000081-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knvkcx
title: Occurrence Download

description: A dataset containing 92093 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bactrocera Macquart, 1835"
 ]
}

 The dataset includes 92093 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000087-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nd5nes
title: Occurrence Download

description: A dataset containing 177 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leptasthenura platensis Reichenbach, 1853"
 ]
}

 The dataset includes 177 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000089-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cmargh
title: Occurrence Download

description: A dataset containing 3968 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lophornis magnificus (Vieillot, 1817)"
 ]
}

 The dataset includes 3968 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000090-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14927617
title: photocatalytic performance

description: photogeneration of hydrogen:

ZnS-sample name

ZnS-Ag_1ml- ZnS_Ag - sample name, 1 ml amount of silver

ZnS-Ag_2ml -ZnS_Ag - sample name, 2 ml amount of silver

ZnS-Ag_3ml -ZnS_Ag - sample name, 3 ml amount of silver

ZnS-Ag_4ml -ZnS_Ag - sample name, 4 ml amount of silver

ZnS-Ag_5ml -ZnS_Ag - sample name, 5 ml amount of silver

ZnS-Ag_7ml -ZnS_Ag - sample name, 7 ml amount of silver

ZnS-Ag_10ml -ZnS_Ag - sample name, 10 ml amount of silver

action spectra and phototability test for ZnS-Ag_2ml
description: Funding: National Science Center Poland grand number: 2022/06/X/ST4/00176
DOI: 10.5281/zenodo.14927618
title: photocatalytic performance

description: photogeneration of hydrogen:

ZnS-sample name

ZnS-Ag_1ml- ZnS_Ag - sample name, 1 ml amount of silver

ZnS-Ag_2ml -ZnS_Ag - sample name, 2 ml amount of silver

ZnS-Ag_3ml -ZnS_Ag - sample name, 3 ml amount of silver

ZnS-Ag_4ml -ZnS_Ag - sample name, 4 ml amount of silver

ZnS-Ag_5ml -ZnS_Ag - sample name, 5 ml amount of silver

ZnS-Ag_7ml -ZnS_Ag - sample name, 7 ml amount of silver

ZnS-Ag_10ml -ZnS_Ag - sample name, 10 ml amount of silver

action spectra and phototability test for ZnS-Ag_2ml
description: Funding: National Science Center Poland grand number: 2022/06/X/ST4/00176
DOI: 10.5281/zenodo.13376153
title: Dynamic island mass effect from space: detection input & output data

description: "dynamic_IMEdetection.zip" contains a dynamic island mass effect detection software package.

To run:



Unzip "dynamic_IMEdetection.zip"

Download input data

change path, region to process, and options in "main_dynamicIME_detection.m" to work with the location of the unzipped "dynamic_IME_input_output_data" directory.

Run "main_dynamicIME_detection.m"


"dynamic_IME_input_output_data.zip" contains the input data and ouput IME and BO masks of the "dynamic_IMEdetection" software for four case studies:



I04 = Rapa Nui

I07 = Society Islands

I09 = Samoa

I18 = Fiji-Tonga


Input data are custom multi-satellite products computed using the custom-made satellite binning software found here: 10.5281/zenodo.13376824.

Output IME and BO masks are computed using the dynamic IME detection software (i.e. "dynamic_IMEdetection") which works with the original naming (i.e. "I04", "I07", "I09", and "I18") and subdirectory path of of the share data "dynamic_IME_input_output_data".

Output IME/BO mask, chlorophyll concentration, and modelled surface current timeseries in *.gif format:



I04_8Dbin_20160520-0712_20161205-2230_map-time-series.gif = Rapa Nui between 2016/05/20 and 2016/12/05

I07_8Dbin_20160622-1012_20170209-0945_map-time-series.gif = Society Islands between 2016/06/22 and 2017/02/09

I09_8Dbin_20160810-1115_20170226-1030_map-time-series.gif = Samoa between 2016/08/10 and 2017/02/26

I18_8Dbin_20170218-1240_20170906-1205_map-time-series.gif = Fiji - Tonga between 2017/02/18 and 2017/09/06
DOI: 10.5281/zenodo.13927434
title: Dynamic island mass effect from space: detection input & output data

description: "dynamic_IMEdetection.zip" contains a dynamic island mass effect detection software package.

To run:



Unzip "dynamic_IMEdetection.zip"

Download input data

change path, region to process, and options in "main_dynamicIME_detection.m" to work with the location of the unzipped "dynamic_IME_input_output_data" directory.

Run "main_dynamicIME_detection.m"


"dynamic_IME_input_output_data.zip" contains the input data and ouput IME and BO masks of the "dynamic_IMEdetection" software for four case studies:



I04 = Rapa Nui

I07 = Society Islands

I09 = Samoa

I18 = Fiji-Tonga


Input data are custom multi-satellite products computed using the custom-made satellite binning software found here: 10.5281/zenodo.13376824.

Output IME and BO masks are computed using the dynamic IME detection software (i.e. "dynamic_IMEdetection") which works with the original naming (i.e. "I04", "I07", "I09", and "I18") and subdirectory path of of the share data "dynamic_IME_input_output_data".

Output IME/BO mask, chlorophyll concentration, and modelled surface current timeseries in *.gif format:



RapaNui_8Dbin_20160520-0712_20161205-2230_map-time-series.gif = Rapa Nui between 2016/05/20 and 2016/12/05

SocietyIsl_8Dbin_20160622-1012_20170209-0945_map-time-series.gif = Society Islands between 2016/06/22 and 2017/02/09

Samoa_8Dbin_20160810-1115_20170226-1030_map-time-series.gif = Samoa between 2016/08/10 and 2017/02/26

FijiTonga_8Dbin_20170218-1240_20170906-1205_map-time-series.gif = Fiji - Tonga between 2017/02/18 and 2017/09/06
DOI: 10.6084/m9.figshare.28489571
title: Data and scripts supporting Elkouk et al. (2024) "towards understanding parametric controls on runoff sensitivity to climate in the community land model: A Case study over the Colorado River Headwaters"

description: Crucial to the assessment of future water security is how the land model component of Earth System Models partition precipitation into evapotranspiration and runoff, and the sensitivity of this partitioning to climate. This sensitivity is not explicitly constrained in land models nor the model parameters important for this sensitivity identified. Here, we seek to understand parametric controls on runoff sensitivity to precipitation and temperature in a state-of-the-science land model, the Community Land Model version 5 (CLM5). Process-parameter interactions underlying these two climate sensitivities are investigated using the sophisticated variance-based sensitivity analysis. This analysis focuses on three snow-dominated basins in the Colorado River headwaters region, a prominent exemplar where land models display a wide disparity in runoff sensitivities. Runoff sensitivities are dominated by indirect or interaction effects between a few parameters of subsurface, snow, and plant processes. A focus on only one kind of parameters would therefore limit the ability to constrain the others. Surface runoff exhibits strong sensitivity to parameters of snow and subsurface processes. Constraining snow simulations would require explicit representation of the spatial variability across large elevation gradients. Subsurface runoff and soil evaporation exhibit very similar sensitivities. Model calibration against the subsurface runoff flux would therefore constrain soil evaporation. The push toward a mechanistic treatment of processes in CLM5 have dampened the sensitivity of parameters compared to earlier model versions. A focus on the sensitive parameters and processes identified here can help characterize and reduce uncertainty in water resource sensitivity to climate change. (https://doi.org/10.1029/2024WR037718)
DOI: 10.5281/zenodo.13854391
title: Discharge data used for "Remote sensing estimates of flow partitioning downstream river bifurcations "
DOI: 10.5281/zenodo.13854392
title: Discharge data used for "Remote sensing estimates of flow partitioning downstream river bifurcations "
DOI: 10.15468/dl.whvrfm
title: Occurrence Download

description: A dataset containing 9802 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mackenziaena severa (Lichtenstein, 1823)"
 ]
}

 The dataset includes 9802 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000091-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x66mks
title: Occurrence Download

description: A dataset containing 22146 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Manacus manacus (Linnaeus, 1766)"
 ]
}

 The dataset includes 22146 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000092-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckfx8k
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Mergus octosetaceus Vieillot, 1817"
 ]
}

 The dataset includes 566 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000093-250225214225278/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.