cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24291052
title: 20231012_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.6084/m9.figshare.24291052.v1
title: 20231012_starrydata2

description: All data on Starrydata2, a database of experimental properties in the field of inorganic materials
DOI: 10.17632/jk97sxvk9h.1
title: Defining Clinically Meaningful Improvement in Molluscum Contagiosum Supplemental Figure

description: Supplemental figure file to support "Defining Clinically Meaningful Improvement in Molluscum Contagiosum" by Maeda-Chubachi C, McLeod L, Enloe C et al, published in the Journal of the American Academy of Dermatology.
DOI: 10.17632/zg5dvh62gp.1
title: Response spectrum data for the steel frame structures' files (Sap2000 files)

description: the response spectrum data used in the analysis is externally loaded as a data file, which likely contains comprehensive information on ground motion accelerations, frequencies, and damping ratios. This enables us to conduct a thorough seismic evaluation of the structure. This data is needed for the following structures: *4-story 132-member irregular space steel frame *6-story 240-member regular space steel frame *8-story 616-member irregular space steel frame *10-story 620-member regular space steel frame To use it, please copy spectrum data to text file and upload file to Sap2000.
DOI: 10.5517/ccdc.csd.cc12rjw7
title: CCDC 1005729: Experimental Crystal Structure Determination

description: Related Article: Anindita Sarkar, Sohrab Rohani|2015|J.Pharm.Sci.|104|98|doi:10.1002/jps.24248
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc24fm9j
title: CCDC 1979297: Experimental Crystal Structure Determination

description: Related Article: Andrey Yu. Baranov, Denis G. Samsonenko, Alexander V. Artem’ev|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28wkh7
title: CCDC 2111859: Experimental Crystal Structure Determination

description: Related Article: Jian Lin|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c25qc
title: CCDC 2176842: Experimental Crystal Structure Determination

description: Related Article: Kadriye Turk, Anita M. Grześkiewicz, Christina N. Banti, Sotiris K. Hadjikakou, Maciej Kubicki, Ibrahim I. Ozturk|2022|J.Inorg.Biochem.|237|111987|doi:10.1016/j.jinorgbio.2022.111987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c25rd
title: CCDC 2176843: Experimental Crystal Structure Determination

description: Related Article: Kadriye Turk, Anita M. Grześkiewicz, Christina N. Banti, Sotiris K. Hadjikakou, Maciej Kubicki, Ibrahim I. Ozturk|2022|J.Inorg.Biochem.|237|111987|doi:10.1016/j.jinorgbio.2022.111987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c25sf
title: CCDC 2176844: Experimental Crystal Structure Determination

description: Related Article: Kadriye Turk, Anita M. Grześkiewicz, Christina N. Banti, Sotiris K. Hadjikakou, Maciej Kubicki, Ibrahim I. Ozturk|2022|J.Inorg.Biochem.|237|111987|doi:10.1016/j.jinorgbio.2022.111987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c25tg
title: CCDC 2176845: Experimental Crystal Structure Determination

description: Related Article: Kadriye Turk, Anita M. Grześkiewicz, Christina N. Banti, Sotiris K. Hadjikakou, Maciej Kubicki, Ibrahim I. Ozturk|2022|J.Inorg.Biochem.|237|111987|doi:10.1016/j.jinorgbio.2022.111987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2c25vh
title: CCDC 2176846: Experimental Crystal Structure Determination

description: Related Article: Kadriye Turk, Anita M. Grześkiewicz, Christina N. Banti, Sotiris K. Hadjikakou, Maciej Kubicki, Ibrahim I. Ozturk|2022|J.Inorg.Biochem.|237|111987|doi:10.1016/j.jinorgbio.2022.111987
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3tq2
title: CCDC 2208214: Experimental Crystal Structure Determination

description: Related Article: Guoping Li, Fei Qin, Robert M. Jacobberger, Subhrangsu Mukherjee, Leighton O. Jones, Ryan M. Young, Robert M. Pankow, Brendan P. Kerwin, Lucas Q. Flagg, Ding Zheng, Liang-Wen Feng, Kevin L. Kohlstedt, Vinod K. Sangwan, Mark C. Hersam, George C. Schatz, Dean M. DeLongchamp, Michael R. Wasielewski, Yinhua Zhou, Antonio Facchetti, Tobin J. Marks|2023|Joule|7|2152|doi:10.1016/j.joule.2023.07.005
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d60c0
title: CCDC 2210311: Experimental Crystal Structure Determination

description: Related Article: Barry A Blight|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d60d1
title: CCDC 2210312: Experimental Crystal Structure Determination

description: Related Article: Barry  Blight|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d60f2
title: CCDC 2210313: Experimental Crystal Structure Determination

description: Related Article: Barry  Blight|2023|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.17632/r4dxytts38.1
title: Representation for All: Educational Handouts Inclusive of Patient Skin Color in a Nail Specialty Clinic

description: Representation for All: Educational Handouts Inclusive of Patient Skin Color in a Nail Specialty Clinic
DOI: 10.5281/zenodo.8431932
title: Coordinates of Service Areas along the German Autobahn

description: This datasets contains the names, coordinates, and highway assignments of 408 service areas along the German Autobahn operated, inter alia, by Autobahn Tank & Rast Gruppe GmbH & Co. KG. This dataset can, for example, be useful for charging station and alternative refueling station location planning in research because existing service areas are often assumed to be candidate location for alternative infrastructure. The data in this publication was generated by using Google Maps (https://www.google.de/maps/) and the location finder tool of the operator Tank & Rast (https://www.serways.de/standorte/). This publication contains one CVS file. The coordinate reference system is EPSG:4326.
DOI: 10.5281/zenodo.8431931
title: Coordinates of Service Areas along the German Autobahn

description: This datasets contains the names, coordinates, and highway assignments of 408 service areas along the German Autobahn operated, inter alia, by Autobahn Tank & Rast Gruppe GmbH & Co. KG. This dataset can, for example, be useful for charging station and alternative refueling station location planning in research because existing service areas are often assumed to be candidate location for alternative infrastructure. The data in this publication was generated by using Google Maps (https://www.google.de/maps/) and the location finder tool of the operator Tank & Rast (https://www.serways.de/standorte/). This publication contains one CVS file. The coordinate reference system is EPSG:4326.
DOI: 10.17632/5sgxm3jnw4.1
title: Ghana-FIFA2022-WorldCup-Dataset

description: Tweets Dataset on the Ghanaian 26-man squad and backroom staff members for the 2022 FIFA world cup. This repository contains IDs of tweets that were sent to the twitter account of the selected Ghanaian 26-man squad and backroom staff members during the FIFA world 2022 at Qatar. We are sharing only tweet ID's in order to comply with the Terms and Conditions of Twitter regarding the sharing of tweets.
DOI: 10.6084/m9.figshare.23285359
title: Avian sperm-borne RNAs: optimisation of a new isolation protocol

description: 1. Sperm-borne RNAs are involved in sperm and embryonic protein translation, the regulation of early development and the epigenetic inheritance of the paternal phenotype. Sperm-borne RNA purification protocols generally include a cell purification stage to discard contamination by somatic cells. In avian species, no protocol is currently available to isolate all the populations composing sperm-borne RNAs. 2. This study evaluated the presence of somatic cells in semen samples of chickens and quails using visual examination after fluorescent nuclei staining. The efficiency of somatic cell lysis buffer (SCLB) on chicken liver cells and its impacts on chicken sperm cell integrity was explored. Three different approaches were tested to isolate RNA: two developed for mammalian sperm cells and a commercial kit for somatic cells. The efficiency and reliability of each approach was determined based on RNA quality and purity. Eventually, the presence of miRNA and mRNA in purified avian sperm-borne RNAs was investigated by RT-(q)PCR. 3. No somatic cells were found in chicken and quail semen. The SCLB totally lysed chicken liver cells but also induced sperm cell necrosis. Consequently, this treatment wasn’t performed on samples prior to RNA isolation. Among the tested RNA purification protocols, the commercial one was the least variable and isolated RNA with the highest purity levels. No DNA contamination was observed. Furthermore, the samples contained miRNA and mRNA already known as present in mammalian sperm cells (<i>gga-miR-100-5p, gga-miR-191-5p</i>, <i>GAPDH</i> and <i>PLCZ1</i>), but mRNAs associated with leucocytes (<i>CD4</i>) and Sertoli cells (<i>SOX4, CLDN11</i>) were not detected. This protocol was successfully applied to quail sperm cells. 4. Altogether, the study reveals that it is unnecessary to pre-treat samples to remove somatic cell contamination before RNA purification and successfully describes an isolation protocol for sperm-borne RNAs, including small non-coding and long coding RNAs, in two distinct avian species highly valuable as biological models.
DOI: 10.6084/m9.figshare.23285359.v2
title: Avian sperm-borne RNAs: optimisation of a new isolation protocol

description: 1. Sperm-borne RNAs are involved in sperm and embryonic protein translation, the regulation of early development and the epigenetic inheritance of the paternal phenotype. Sperm-borne RNA purification protocols generally include a cell purification stage to discard contamination by somatic cells. In avian species, no protocol is currently available to isolate all the populations composing sperm-borne RNAs. 2. This study evaluated the presence of somatic cells in semen samples of chickens and quails using visual examination after fluorescent nuclei staining. The efficiency of somatic cell lysis buffer (SCLB) on chicken liver cells and its impacts on chicken sperm cell integrity was explored. Three different approaches were tested to isolate RNA: two developed for mammalian sperm cells and a commercial kit for somatic cells. The efficiency and reliability of each approach was determined based on RNA quality and purity. Eventually, the presence of miRNA and mRNA in purified avian sperm-borne RNAs was investigated by RT-(q)PCR. 3. No somatic cells were found in chicken and quail semen. The SCLB totally lysed chicken liver cells but also induced sperm cell necrosis. Consequently, this treatment wasn’t performed on samples prior to RNA isolation. Among the tested RNA purification protocols, the commercial one was the least variable and isolated RNA with the highest purity levels. No DNA contamination was observed. Furthermore, the samples contained miRNA and mRNA already known as present in mammalian sperm cells (<i>gga-miR-100-5p, gga-miR-191-5p</i>, <i>GAPDH</i> and <i>PLCZ1</i>), but mRNAs associated with leucocytes (<i>CD4</i>) and Sertoli cells (<i>SOX4, CLDN11</i>) were not detected. This protocol was successfully applied to quail sperm cells. 4. Altogether, the study reveals that it is unnecessary to pre-treat samples to remove somatic cell contamination before RNA purification and successfully describes an isolation protocol for sperm-borne RNAs, including small non-coding and long coding RNAs, in two distinct avian species highly valuable as biological models.
DOI: 10.6084/m9.figshare.23266633
title: Mass spectrometry-based metabolic profiling for identification of biomarkers related to footpad dermatitis in ducks

description: 1. A new assessment method for duck footpad dermatitis (FPD) evaluation was developed, combining visual and histological characters using the images and sections of 400 ducks’ feet at 340 d of age. All ducks were graded as G0 (healthy), G1 (mild), G2 (moderate) and G3 (severe) according to the degree of FPD. 2. To reveal the potential biomarkers in serum related to duck FPD, non-targeted metabolomics and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were used to explore differential metabolites in each group. 3. There were 57, 91 and 210 annotated differential metabolites in groups G1, G2 and G3 compared with G0, which meant that the severity of FPD increased in line with the number of metabolites. Four metabolites, L-phenylalanine, L-arginine, L-leucine and L-lysine, were considered potential biomarkers related to FPD. 4. KEGG enrichment analysis showed that the FPD was mainly involved in glycolysis, the tricarboxylic acid (TCA) cycle, the pentose phosphate pathway and amino acid metabolism. These are related to production metabolism and can affect the physiological activities of ducks, which might explain the decrease in production performance.
DOI: 10.6084/m9.figshare.23266633.v2
title: Mass spectrometry-based metabolic profiling for identification of biomarkers related to footpad dermatitis in ducks

description: 1. A new assessment method for duck footpad dermatitis (FPD) evaluation was developed, combining visual and histological characters using the images and sections of 400 ducks’ feet at 340 d of age. All ducks were graded as G0 (healthy), G1 (mild), G2 (moderate) and G3 (severe) according to the degree of FPD. 2. To reveal the potential biomarkers in serum related to duck FPD, non-targeted metabolomics and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were used to explore differential metabolites in each group. 3. There were 57, 91 and 210 annotated differential metabolites in groups G1, G2 and G3 compared with G0, which meant that the severity of FPD increased in line with the number of metabolites. Four metabolites, L-phenylalanine, L-arginine, L-leucine and L-lysine, were considered potential biomarkers related to FPD. 4. KEGG enrichment analysis showed that the FPD was mainly involved in glycolysis, the tricarboxylic acid (TCA) cycle, the pentose phosphate pathway and amino acid metabolism. These are related to production metabolism and can affect the physiological activities of ducks, which might explain the decrease in production performance.
DOI: 10.6084/m9.figshare.23821335.v2
title: How are they really doing? Animal welfare on organic laying hen farms in terms of health and behaviour

description: 1. The present study describes the current welfare situation on commercial organic laying hen farms in Sweden in terms of indoor environment, bird health and behaviour. 2. Organic laying hen farms (<i>n </i>= 11) in Sweden were visited for one day each. The farm visits were performed at the end of lay and involved farmer interviews, indoor environment assessments, behavioural observations and tests and clinical examinations in one flock per farm. 3. In 95% of all human avoidance distance test trials performed, the hens distanced themselves from the observer before the test was completed. Median number of birds per flock approaching during a novel object test (<i>n </i>= 4 trials per flock) was 2 (0-9). These results may indicate a high level of fear of humans and general fearfulness among the hens. 4. Plumage damage was especially prevalent and most severe on the breast and belly, tail and wings, with median prevalence of moderate-severe damage of 96% (84–100), 96% (72–100) and 98% (94–100), respectively. Median prevalence of keel bone deviations was 67% (32–84) with 3% fractures (0–8). Median prevalence of breast skin lesions was 57% (10–74). There was a significant positive association between breast skin lesions and keel bone deviations (<i>P </i>= 0.02) and foot pad hyperkeratosis (<i>P </i>&lt; 0.001). Median prevalence of severe hyperkeratosis was 33% (8–96), with prevalence being significantly lower where litter depth was thicker (<i>P </i>= 0.003). More dust bathing events were observed in flocks where litter depth was thicker (<i>P </i>= 0.007). 5. The present study contributes with updated knowledge of laying hen welfare on organic farms in Sweden. The results confirm the findings of previous on-farm studies, demonstrating that important issues, including keel bone damage and severe feather pecking, remain in need of attention to ensure the welfare of laying hens in future commercial egg production.
DOI: 10.6084/m9.figshare.23821335
title: How are they really doing? Animal welfare on organic laying hen farms in terms of health and behaviour

description: 1. The present study describes the current welfare situation on commercial organic laying hen farms in Sweden in terms of indoor environment, bird health and behaviour. 2. Organic laying hen farms (<i>n </i>= 11) in Sweden were visited for one day each. The farm visits were performed at the end of lay and involved farmer interviews, indoor environment assessments, behavioural observations and tests and clinical examinations in one flock per farm. 3. In 95% of all human avoidance distance test trials performed, the hens distanced themselves from the observer before the test was completed. Median number of birds per flock approaching during a novel object test (<i>n </i>= 4 trials per flock) was 2 (0-9). These results may indicate a high level of fear of humans and general fearfulness among the hens. 4. Plumage damage was especially prevalent and most severe on the breast and belly, tail and wings, with median prevalence of moderate-severe damage of 96% (84–100), 96% (72–100) and 98% (94–100), respectively. Median prevalence of keel bone deviations was 67% (32–84) with 3% fractures (0–8). Median prevalence of breast skin lesions was 57% (10–74). There was a significant positive association between breast skin lesions and keel bone deviations (<i>P </i>= 0.02) and foot pad hyperkeratosis (<i>P </i>&lt; 0.001). Median prevalence of severe hyperkeratosis was 33% (8–96), with prevalence being significantly lower where litter depth was thicker (<i>P </i>= 0.003). More dust bathing events were observed in flocks where litter depth was thicker (<i>P </i>= 0.007). 5. The present study contributes with updated knowledge of laying hen welfare on organic farms in Sweden. The results confirm the findings of previous on-farm studies, demonstrating that important issues, including keel bone damage and severe feather pecking, remain in need of attention to ensure the welfare of laying hens in future commercial egg production.
DOI: 10.5281/zenodo.8431474
title: The Discovery of Novel Takeda G protein-coupled Receptor 5 Agonists: An Integrated Computational Approach

description: molecular docking and MD simulation data
DOI: 10.5281/zenodo.8431473
title: The Discovery of Novel Takeda G protein-coupled Receptor 5 Agonists: An Integrated Computational Approach

description: molecular docking and MD simulation data
DOI: 10.6073/pasta/8929d93801db656ae1ad0f3a12a1345c
title: Soil and foliar carbon and nitrogen content and stable isotope ratios from rainfall manipulation experiments at the Jornada Basin LTER, 2011-2020

description: As rainfall extremes are expected to increase in novel magnitude and frequency, especially in dryland regions, we asked how prolonged and directional shifts to water availability may affect ecosystem carbon and nitrogen dynamics. This data set includes foliar and soil carbon and nitrogen stable isotope and concentration data collected from multiple long-term rainfall manipulation experiments at the Jornada Basin LTER. Datasets also include rainfall data adjusted to rainfall manipulation intensities. Collection dates range from 5 to 14 years since the onset of experimental treatments. The primary plant species targeted for this study were the dominant grass, Bouteloua eriopoda, and the dominant shrub, Prosopis glandulosa.
DOI: 10.15139/s3/64pjmv
title: Malaria Routine Data Quality Assessment (MRDQA) Tool results, round 3, Mali

description: Data collected from the third use of the Malaria Routine Data Quality Assessment (MRDQA) tool in Mali.