cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5324434
title: Boy Scouts of America, Three Year Training Program Certificate, Albert Lyon

description: Boy Scouts of America, Three Year Training Program Certificate, Albert Lyon<br>The Boy Scouts of America have approved publication under the terms mentioned on this page.<br>
DOI: 10.6084/m9.figshare.5324443
title: Petrological evolution of the Middle Triassic Predazzo Intrusive Complex, Italian Alps

description: The Predazzo Intrusive Complex (PIC), a Ladinian plutonic body located in the Southern Alps (NE Italy), is made up of a 4.5 km<sup>3</sup> gabbroic to syenitic and syenogranitic intrusion, basaltic to latitic volcanic products (about 6 km<sup>3</sup> in volume) and by an extended dike swarm intruding both intrusive and volcanic rocks. An extensive field survey of the complex, followed by detailed petrographic and geochemical analyses, allowed the identification of three different magmatic units: a Shoshonitic Silica Saturated Unit (SS), 3.1 km<sup>3</sup> in volume, a Shoshonitic Silica Undersaturated Unit (SU), 0.3 km<sup>3</sup> in volume, and a Granitic Unit (GU), 1.1 km<sup>3</sup> in volume. K-affinity, marked Nb and Ti negative anomalies and a strong Pb enrichment are distinctive markers for all PIC lithotypes. A general HFSE (Th, U, Pb), LREE (La, Ce, Pr, Nd) and Na enrichment characterizes the SU suite with respect to the SS series. Mass balance calculations, based on major and trace element whole rock and mineral compositions, have been used to simulate the fractionation process of SS and SU suites, showing (i) the complexity of the evolutionary stages of the PIC and (ii) the analogy between the calculated subtracted solid assemblages and the natural cumulitic lithotypes outcropping in the area. The field relationships between the various portions of the intrusive complex, the volcanic products and the dike swarm define the temporal evolution of the PIC, in which the SS magma batch was followed by the GU and later on by the SU intrusion. The presence, in both eastern and western portions of the complex, of a transitional magmatic contact between the intrusive rocks of the SS suite and the volcanics is not in favour of the hypothesis of a caldera collapse to explain the ring-like shape of the PIC.
DOI: 10.6084/m9.figshare.5324449
title: Supplementary data for Iron Age landscapes of the Benue River Valley, Cameroon. Journal of Field Archaeology 42(5). Profile descriptions of sections from Langui Tchéboua.

description: These are the detailed stratigraphic profile descriptions of the Langui Tscheboua site in northern Cameroon.
DOI: 10.6084/m9.figshare.5324452.v1
title: Wyoming Municipal Court, certificate of Jury service (July 6, 1970), Albert Earl Lyon

description: Wyoming Municipal Court, certificate of Jury service (July 6, 1970), Albert Earl Lyon
DOI: 10.6084/m9.figshare.5324443.v1
title: Petrological evolution of the Middle Triassic Predazzo Intrusive Complex, Italian Alps

description: The Predazzo Intrusive Complex (PIC), a Ladinian plutonic body located in the Southern Alps (NE Italy), is made up of a 4.5 km<sup>3</sup> gabbroic to syenitic and syenogranitic intrusion, basaltic to latitic volcanic products (about 6 km<sup>3</sup> in volume) and by an extended dike swarm intruding both intrusive and volcanic rocks. An extensive field survey of the complex, followed by detailed petrographic and geochemical analyses, allowed the identification of three different magmatic units: a Shoshonitic Silica Saturated Unit (SS), 3.1 km<sup>3</sup> in volume, a Shoshonitic Silica Undersaturated Unit (SU), 0.3 km<sup>3</sup> in volume, and a Granitic Unit (GU), 1.1 km<sup>3</sup> in volume. K-affinity, marked Nb and Ti negative anomalies and a strong Pb enrichment are distinctive markers for all PIC lithotypes. A general HFSE (Th, U, Pb), LREE (La, Ce, Pr, Nd) and Na enrichment characterizes the SU suite with respect to the SS series. Mass balance calculations, based on major and trace element whole rock and mineral compositions, have been used to simulate the fractionation process of SS and SU suites, showing (i) the complexity of the evolutionary stages of the PIC and (ii) the analogy between the calculated subtracted solid assemblages and the natural cumulitic lithotypes outcropping in the area. The field relationships between the various portions of the intrusive complex, the volcanic products and the dike swarm define the temporal evolution of the PIC, in which the SS magma batch was followed by the GU and later on by the SU intrusion. The presence, in both eastern and western portions of the complex, of a transitional magmatic contact between the intrusive rocks of the SS suite and the volcanics is not in favour of the hypothesis of a caldera collapse to explain the ring-like shape of the PIC.
DOI: 10.6084/m9.figshare.5324449.v1
title: Supplementary data for Iron Age landscapes of the Benue River Valley, Cameroon. Journal of Field Archaeology 42(5). Profile descriptions of sections from Langui Tchéboua.

description: These are the detailed stratigraphic profile descriptions of the Langui Tscheboua site in northern Cameroon.
DOI: 10.6084/m9.figshare.5324431
title: Asymmetric localisation of DLC1 defines avian trunk neural crest polarity for directional delamination and migration

description: ChIP-qPCR raw data for SOX9, SOX10 and IgG (control) antibodies on B1, B2 and B3
DOI: 10.6084/m9.figshare.5324434.v1
title: Boy Scouts of America, Three Year Training Program Certificate, Albert Lyon

description: Boy Scouts of America, Three Year Training Program Certificate, Albert Lyon<br>The Boy Scouts of America have approved publication under the terms mentioned on this page.<br>
DOI: 10.6084/m9.figshare.5324428
title: <i>Paramacrobiotus lachowskae</i>, a new species of Tardigrada from Colombia (Eutardigrada: Parachela: Macrobiotidae)

description: In this article we describe a new <i>Paramacrobiotus</i> species of the <i>areolatus</i> group by means of integrative taxonomy. Together with the detailed morphological and morphometric data (obtained from light and scanning electron microscopy) we also provide DNA sequences of four universal molecular markers used in tardigrade taxonomy (three nDNA fragments: 18S rRNA, 28S rRNA, ITS-2, and one mtDNA fragment: COI). The animals of <i>Paramacrobiotus lachowskae</i> sp. nov. are similar to several species of the <i>areolatus</i> complex and the eggshell ornamentation is similar to that of two species of the <i>richtersi</i> group. Therefore, the new species can be easily distinguished from the <i>areolatus</i> group species by egg morphology (dome-like, wrinkled processes with long flexible spines/filaments covered by fine short hairs) and from species of the <i>richtersi</i> complex by the absence of the microplacoid. <i>Paramacrobiotus lachowskae</i> sp. nov. is the 43rd species reported from Colombia and fifth <i>Paramacrobiotus</i> species from this South American country. http://zoobank.org/urn:lsid:zoobank.org:pub:FEDC11D3-DCCF-4699-A704-CE6DEA1CDED4
DOI: 10.6084/m9.figshare.5324407
title: Figure file and plotting code

description: Figure files for the paper "Li et al 2017, Estimating global ecosystem iso/anisohydry using active and passive microwave satellite data, JGR" and plotting codes in Python.<br>
DOI: 10.6084/m9.figshare.5324428.v1
title: <i>Paramacrobiotus lachowskae</i>, a new species of Tardigrada from Colombia (Eutardigrada: Parachela: Macrobiotidae)

description: In this article we describe a new <i>Paramacrobiotus</i> species of the <i>areolatus</i> group by means of integrative taxonomy. Together with the detailed morphological and morphometric data (obtained from light and scanning electron microscopy) we also provide DNA sequences of four universal molecular markers used in tardigrade taxonomy (three nDNA fragments: 18S rRNA, 28S rRNA, ITS-2, and one mtDNA fragment: COI). The animals of <i>Paramacrobiotus lachowskae</i> sp. nov. are similar to several species of the <i>areolatus</i> complex and the eggshell ornamentation is similar to that of two species of the <i>richtersi</i> group. Therefore, the new species can be easily distinguished from the <i>areolatus</i> group species by egg morphology (dome-like, wrinkled processes with long flexible spines/filaments covered by fine short hairs) and from species of the <i>richtersi</i> complex by the absence of the microplacoid. <i>Paramacrobiotus lachowskae</i> sp. nov. is the 43rd species reported from Colombia and fifth <i>Paramacrobiotus</i> species from this South American country. http://zoobank.org/urn:lsid:zoobank.org:pub:FEDC11D3-DCCF-4699-A704-CE6DEA1CDED4
DOI: 10.6084/m9.figshare.5324431.v2
title: Asymmetric localisation of DLC1 defines avian trunk neural crest polarity for directional delamination and migration

description: ChIP-qPCR raw data for SOX9, SOX10 and IgG (control) antibodies on B1, B2 and B3
DOI: 10.17608/k6.auckland.5324413.v1
title: Incipits Mass Spurious 1

description: Incipits for the mass Wanhal Spurious 1.<br>
DOI: 10.6084/m9.figshare.5324431.v1
title: Asymmetric localisation of DLC1 defines avian trunk neural crest polarity for directional delamination and migration

description: ChIP-qPCR raw data for SOX9, SOX10 and IgG (control) antibodies on B1, B2 and B3
DOI: 10.6084/m9.figshare.5324407.v2
title: Figure file and plotting code

description: Figure files for the paper "Li et al 2017, Estimating global ecosystem iso/anisohydry using active and passive microwave satellite data, JGR" and plotting codes in Python.<br>
DOI: 10.6084/m9.figshare.5323987
title: Global ecosystem iso/anisohydry estimates based on QuikSCAT backscatter and AMSR-E VOD

description: <b><b>Data file:</b></b><br><b>1. fig_1_quikscat_isohydricity.nc</b><br>The QuikSCAT backscatter iso/anisohydry estimates at 0.05 degree, including both V- and H-polarizations.<br><b>2. fig_1_vod_isohydricity.nc</b><br>The AMSR-E VOD (UMT algorithm) iso/anisohydry estimates at 0.25 degree.<b><br></b><br><b>3. quikscat_vod_isohydricity_1deg.nc</b>The QuikSCAT and AMSR-E VOD (UMT algorithm) iso/anisohydry estimates at 1 degree<br><br><b>4. quikscat_vod_isohydricity_range_1deg.nc<br></b>Confidence interval range (95% by t-test) of the QuikSCAT and AMSR-E VOD (UMT algorithm) iso/anisohydry estimates at 1 degree.<br><br><b>5. vod_konings_isohydricity_1deg.nc</b>The AMSR-E VOD (LPRM algorithm) iso/anisohydry estimates at 1 degree using data from Konings and Gentine 2017 <b><br></b><br>Find more details in Yan Li, Kaiyu Guan, Pierre Gentine, Alexandra G. Konings, Frederick C. Meinzer, John S. Kimball, Xiangtao Xu, William R. L. Anderegg, Nate G. McDowell, Jordi Martínez-Vilalta, David G. Long, Stephen P. Good. Estimating global ecosystem iso/anisohydry using active and passive microwave satellite data, Journal of Geophysical Research, Biogeosciences, 2017.<br><br><b><br></b><b><br></b>
DOI: 10.6084/m9.figshare.5324407.v1
title: Figure file and plotting code

description: Figure files for the paper "Li et al 2017, Estimating global ecosystem iso/anisohydry using active and passive microwave satellite data, JGR" and plotting codes in Python.<br>
DOI: 10.6084/m9.figshare.5319739
title: RAPID CAT Dataset

description: Raw dataset from Rapidcat study<br>
DOI: 10.6084/m9.figshare.5319739.v1
title: RAPID CAT Dataset

description: Raw dataset from Rapidcat study<br>
DOI: 10.6084/m9.figshare.5319640
title: Transfer-RNA-mediated enhancement of ribosomal proteins S6 kinases signaling for cell proliferation

description: While transfer-RNAs (tRNAs) are known to transport amino acids to ribosome, new functions are being unveiled from tRNAs and their fragments beyond protein synthesis. Here we show that phosphorylation of 90-kDa RPS6K (ribosomal proteins S6 kinase) was enhanced by tRNA<sup>Leu</sup> overexpression under amino acids starvation condition. The phosphorylation of 90-kDa RPS6K was decreased by siRNA specific to tRNA<sup>Leu</sup> and was independent to mTOR (mammalian target of rapamycin) signaling. Among the 90-kDa RPS6K family, RSK1 (ribosomal S6 kinase 1) and MSK2 (mitogen-and stress-activated protein kinase 2) were the major kinases phosphorylated by tRNA<sup>Leu</sup> overexpression. Through SILAC (stable isotope labeling by/with amino acids in cell culture) and combined mass spectrometry analysis, we identified EBP1 (ErbB3-binding protein 1) as the tRNA<sup>Leu</sup>-binding protein. We suspected that the overexpression of free tRNA<sup>Leu</sup> would reinforce ErbB2/ErbB3 signaling pathway by disturbing the interaction between ErbB3 and EBP1, resulting in RSK1/MSK2 phosphorylation, improving cell proliferation and resistance to death. Analysis of samples from patients with breast cancer also indicated an association between tRNA<sup>Leu</sup> overexpression and the ErbB2-positive population. Our results suggested a possible link between tRNA<sup>Leu</sup> overexpression and RSK1/MSK2 activation and ErbB2/ErbB3 signaling.
DOI: 10.6084/m9.figshare.5319640.v2
title: Transfer-RNA-mediated enhancement of ribosomal proteins S6 kinases signaling for cell proliferation

description: While transfer-RNAs (tRNAs) are known to transport amino acids to ribosome, new functions are being unveiled from tRNAs and their fragments beyond protein synthesis. Here we show that phosphorylation of 90-kDa RPS6K (ribosomal proteins S6 kinase) was enhanced by tRNA<sup>Leu</sup> overexpression under amino acids starvation condition. The phosphorylation of 90-kDa RPS6K was decreased by siRNA specific to tRNA<sup>Leu</sup> and was independent to mTOR (mammalian target of rapamycin) signaling. Among the 90-kDa RPS6K family, RSK1 (ribosomal S6 kinase 1) and MSK2 (mitogen-and stress-activated protein kinase 2) were the major kinases phosphorylated by tRNA<sup>Leu</sup> overexpression. Through SILAC (stable isotope labeling by/with amino acids in cell culture) and combined mass spectrometry analysis, we identified EBP1 (ErbB3-binding protein 1) as the tRNA<sup>Leu</sup>-binding protein. We suspected that the overexpression of free tRNA<sup>Leu</sup> would reinforce ErbB2/ErbB3 signaling pathway by disturbing the interaction between ErbB3 and EBP1, resulting in RSK1/MSK2 phosphorylation, improving cell proliferation and resistance to death. Analysis of samples from patients with breast cancer also indicated an association between tRNA<sup>Leu</sup> overexpression and the ErbB2-positive population. Our results suggested a possible link between tRNA<sup>Leu</sup> overexpression and RSK1/MSK2 activation and ErbB2/ErbB3 signaling.
DOI: 10.6084/m9.figshare.5319628
title: The fate of asymptomatic severe carotid stenosis in the era of best medical therapy

description: <i>Background</i>: Medical therapy for asymptomatic carotid artery stenosis (ACAS) may obviate the carotid revascularization, according to recent literature reports, but many studies also considered moderate carotid artery stenosis (50–69% NASCET). This study reviews the most recent series of ACAS focusing on ipsilateral transient ischemic attack (TIA) stroke and annual risk of stroke in patients with ACAS ≥70%, thereby also evaluating the adherence to best medical therapy (BMT). <i>Methods</i>: A systematic review consisting of all the series of patients with ACAS being treated medically was performed, which was published after 2005. The annual pooled risk of ipsilateral TIA-stroke and stroke in patients with ACAS ≥70% was calculated. A subgroup of studies with BMT defined as ≥90% of the patients in antiplatelet and statin therapy was performed. <i>Results</i>: Eleven studies, with the enrolling period from 1996 to 2009, were reviewed. Overall, 2185 patients were considered, with a follow-up from 2 to 13 years, for a total of 6834 patients/year. The pooled risk was 3.4%/year for ipsilateral TIA-stroke and 1.6%/year for stroke. Five studies, published from 2014, had BMT adherence, for a total of 1665 patients/year. The pooled risk was 3.5%/year for ipsilateral TIA-stroke and for stroke. <i>Conclusion</i>: The most recent series of ACAS ≥70% and BMT had an overall stroke rate which is relatively low; however, the risk of developing symptoms is still relevant (3.4%/year).
DOI: 10.6084/m9.figshare.5319640.v1
title: Transfer-RNA-mediated enhancement of ribosomal proteins S6 kinases signalling for cell proliferation

description: While transfer RNAs (tRNAs) are known to transport amino acids to ribosome, new functions are being unveiled from tRNAs and their fragments beyond protein synthesis. Here we show that phosphorylation of 90-kDa RPS6K (ribosomal proteins S6 kinase) was enhanced by tRNA<sup>Leu</sup> overexpression under amino acids starvation condition. The phosphorylation of 90-kDa RPS6K was decreased by siRNA specific to tRNA<sup>Leu</sup> and was independent to mTOR (mammalian target of rapamycin) signalling. Among the 90-kDa RPS6K family, RSK1 (ribosomal S6 kinase 1) and MSK2 (mitogen-and stress-activated protein kinase 2) were the major kinases phosphorylated by tRNA<sup>Leu</sup> overexpression. Through SILAC (stable isotope labelling by/with amino acids in cell culture) and combined mass spectrometry analysis, we identified EBP1 (ErbB3-binding protein 1) as the tRNA<sup>Leu</sup>-binding protein. We suspected that the overexpression of free tRNA<sup>Leu</sup> would reinforce ErbB2/ErbB3 signalling pathway by disturbing the interaction between ErbB3 and EBP1, resulting in RSK1/MSK2 phosphorylation, improving cell proliferation and resistance to death. Analysis of samples from patients with breast cancer also indicated an association between tRNA<sup>Leu</sup> overexpression and the ErbB2-positive population. Our results suggested a possible link between tRNA<sup>Leu</sup> overexpression and RSK1/MSK2 activation and ErbB2/ErbB3 signalling.
DOI: 10.6084/m9.figshare.5319628.v1
title: The fate of asymptomatic severe carotid stenosis in the era of best medical therapy

description: <i>Background</i>: Medical therapy for asymptomatic carotid artery stenosis (ACAS) may obviate the carotid revascularization, according to recent literature reports, but many studies also considered moderate carotid artery stenosis (50–69% NASCET). This study reviews the most recent series of ACAS focusing on ipsilateral transient ischemic attack (TIA) stroke and annual risk of stroke in patients with ACAS ≥70%, thereby also evaluating the adherence to best medical therapy (BMT). <i>Methods</i>: A systematic review consisting of all the series of patients with ACAS being treated medically was performed, which was published after 2005. The annual pooled risk of ipsilateral TIA-stroke and stroke in patients with ACAS ≥70% was calculated. A subgroup of studies with BMT defined as ≥90% of the patients in antiplatelet and statin therapy was performed. <i>Results</i>: Eleven studies, with the enrolling period from 1996 to 2009, were reviewed. Overall, 2185 patients were considered, with a follow-up from 2 to 13 years, for a total of 6834 patients/year. The pooled risk was 3.4%/year for ipsilateral TIA-stroke and 1.6%/year for stroke. Five studies, published from 2014, had BMT adherence, for a total of 1665 patients/year. The pooled risk was 3.5%/year for ipsilateral TIA-stroke and for stroke. <i>Conclusion</i>: The most recent series of ACAS ≥70% and BMT had an overall stroke rate which is relatively low; however, the risk of developing symptoms is still relevant (3.4%/year).
DOI: 10.6084/m9.figshare.5319589
title: Bayesian Dimensionality Reduction With PCA Using Penalized Semi-Integrated Likelihood

description: We discuss the problem of estimating the number of principal components in principal components analysis (PCA). Despite the importance of the problem and the multitude of solutions proposed in literature, it comes as a surprise that there does not exist a coherent asymptotic framework, which would justify different approaches depending on the actual size of the dataset. In this article, we address this issue by presenting an approximate Bayesian approach based on Laplace approximation and introducing a general method of developing criteria for model selection, called PEnalized SEmi-integrated Likelihood (PESEL). Our general framework encompasses a variety of existing approaches based on probabilistic models, like the Bayesian Information Criterion for Probabilistic PCA (PPCA), and enables the construction of new criteria, depending on the size of the dataset at hand and additional prior information. Specifically, we apply PESEL to derive two new criteria for datasets where the number of variables substantially exceeds the number of observations, which is out of the scope of currently existing approaches. We also report results of extensive simulation studies and real data analysis, which illustrate the desirable properties of our proposed criteria as compared to state-of-the-art methods and very recent proposals. Specifically, these simulations show that PESEL-based criteria can be quite robust against deviations from the assumptions of a probabilistic model. Selected PESEL-based criteria for the estimation of the number of principal components are implemented in the R package <i>pesel</i>, which is available on github (<i>https://github.com/psobczyk/pesel</i>). Supplementary material for this article, with additional simulation results, is available online. The code to reproduce all simulations is available at <i>https://github.com/psobczyk/pesel_simulations</i>.
DOI: 10.6084/m9.figshare.5319577
title: Five-year motor functional outcome in children with acquired brain injury. Yet to the end of the story?

description: <i>Purpose</i>: The description of motor changes and clinical evolution of a pediatric cohort with acquired brain injury (ABI) over 5 years by the functional independence measure for children (WeeFIM). <i>Methods</i>: We analyzed retrospective data from 496 patients (aged 0–18 years) with severe ABI admitted for rehabilitation. WeeFIM scores and disability rating scale (reference scale) were collected at admission, discharge and yearly, up to year 5. <i>Results</i>: Functional limitations gradually reduced after ABI, but children still had residual disabilities at the endpoint. Seventeen percent of patients demonstrated no improvement at WeeFIM. Gait analysis showed that decreased WeeFIM scores in the mobility domain are associated with slower and shorter steps, and increased step width, compensating for imbalance. <i>Conclusions</i>: Five years after ABI, improvement is still found in the mobility domain of WeeFIM. This work adds evidence that margin still exists at least until year 5 after injury for profitably continuing the rehabilitation effort.
DOI: 10.6084/m9.figshare.5319577.v1
title: Five-year motor functional outcome in children with acquired brain injury. Yet to the end of the story?

description: <i>Purpose</i>: The description of motor changes and clinical evolution of a pediatric cohort with acquired brain injury (ABI) over 5 years by the functional independence measure for children (WeeFIM). <i>Methods</i>: We analyzed retrospective data from 496 patients (aged 0–18 years) with severe ABI admitted for rehabilitation. WeeFIM scores and disability rating scale (reference scale) were collected at admission, discharge and yearly, up to year 5. <i>Results</i>: Functional limitations gradually reduced after ABI, but children still had residual disabilities at the endpoint. Seventeen percent of patients demonstrated no improvement at WeeFIM. Gait analysis showed that decreased WeeFIM scores in the mobility domain are associated with slower and shorter steps, and increased step width, compensating for imbalance. <i>Conclusions</i>: Five years after ABI, improvement is still found in the mobility domain of WeeFIM. This work adds evidence that margin still exists at least until year 5 after injury for profitably continuing the rehabilitation effort.