cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4020347
title: Phasic oxygen dynamics confounds fast choline-sensitive biosensor signals in the brain of behaving rodents

description: This dataset includes all source code and data for reproducing figures, as well as raw data from <em>the vitro</em> experiments and mathematical model used in the publication "Phasic oxygen dynamics confounds fast choline-sensitive biosensor signals in the brain of behaving rodents" published in eLife, https://doi.org/10.7554/eLife.61940
DOI: 10.5258/soton/wp00678
title: peanutButter: An R package to produce rapid-response gridded population estimates from building footprints, version 0.2.1.

description: peanutButter is an R package that allows you to produce gridded population estimates from building footprints using the "peanut butter" method of spreading people evenly among buildings based on a set of simple parameters. This package allows you to: 1) produce gridded population estimates using a bottom-up approach that applies your estimates of average people per building for urban and rural areas to each building in the corresponding settlement type, 2) produce gridded population estimates using a top-down approach that dissaggregates your population totals for administrative units evenly among buildings such that the population total per administrative unit matches those defined by the user, 3) produce gridded population estimates for specific demographic groups (i.e. age and sex), and 4) run the peanutButter Shiny application locally from the R console for a graphical user interface.
DOI: 10.5258/soton/wp00667
title: peanutButter: An R package to produce rapid-response gridded population estimates from building footprints, version 0.1.0

description: peanutButter is an R package that allows you to produce gridded population estimates from building footprints using the "peanut butter" method of spreading people evenly among buildings based on a set of simple parameters. This package allows you to: 1) produce gridded population estimates using a bottom-up approach that applies your estimates of average people per building for urban and rural areas to each building in the corresponding settlement type, 2) produce gridded population estimates using a top-down approach that dissaggregates your population totals for administrative units evenly among buildings such that the population total per administrative unit matches those defined by the user, 3) produce gridded population estimates for specific demographic groups (i.e. age and sex), and 4) run the peanutButter Shiny application locally from the R console for a graphical user interface.
DOI: 10.6084/m9.figshare.14125394.v1
title: Data File for "Collective Action Problems and Direct Democracy"

description: Data File for paper "Collective Action Problems and Direct Democracy"
DOI: 10.6084/m9.figshare.14125394
title: Data File for "Collective Action Problems and Direct Democracy"

description: Data File for paper "Collective Action Problems and Direct Democracy"
DOI: 10.5258/soton/wp00665
title: wpgpRFPMS: WorldPop Random Forests population modelling R scripts , version 0.1.0

description: wpgpRFPMS is a population modelling R script utilizing Random Forests to inform a dasymetric redistribution of census-based population count data. Random Forest based dasymetric mapping approach developed by Stevens et al. Disaggregating Census Data for Population Mapping Using Random Forests with Remotely-Sensed and Ancillary Data. PLoS ONE 10, e0107042 (2015).
DOI: 10.5258/soton/wp00664
title: wopr: An R package to query the WorldPop Open Population Repository, version 0.2.0

description: wopr is an R package that provides API access to the WorldPop Open Population Repository so users can download population data, query specific locations and demographic groups, get robust statistical estimates of uncertainty, and run the woprVision Shiny application from the R console.
DOI: 10.5281/zenodo.4316877
title: Supplement for Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds

description: This is a supplement to the main manuscript: Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds
DOI: 10.5281/zenodo.4316876
title: Supplement for Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds

description: This is a supplement to the main manuscript: Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds
DOI: 10.5281/zenodo.4311567
title: Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds

description: The discrepancy between the observed concentration of ice-nucleating particles (INPs) and ice crystal number concentration (ICNC) remains unresolved and limits our understanding of ice formation and hence precipitation amount, location and intensity. Enhanced ice formation through secondary ice production (SIP) could be accounting for this discrepancy. Here, we present the results from a sensitivity model study in the Eastern Swiss Alps with additional simulated in-cloud SIP on precipitation formation and consequently on surface precipitation. The SIP processes considered include rime splintering, droplet shattering during freezing and breakup through ice-ice collisions. We simulated the passage of a cold front at Gotschnagrat, a peak at 2281 m above sea level (a.s.l.), on 7 March 2019 with COSMO, at a 1 km horizontal resolution, as part of the RACLETS field campaign in the Davos region in Switzerland. The largest simulated difference in ICNC at the surface originated from the breakup simulations. Indeed, breakup caused a 1 to 3 order of magnitude increase in ICNC compared to SIP from rime splintering or without SIP processes in the control simulations. The ICNCs from the collisional breakup simulations at Gotschnagrat were in better agreement with the ICNC concentrations measured on a gondola near the surface. However, these simulations were not able to reproduce the ice crystal habits near the surface. Enhanced ICNCs from collisional breakup reduced localized regions of higher precipitation and thereby improving the model performance in terms of surface precipitation over the domain.
DOI: 10.5281/zenodo.4311566
title: Sensitivity of precipitation formation to secondary ice production in winter orographic mixed-phase clouds

description: The discrepancy between the observed concentration of ice-nucleating particles (INPs) and ice crystal number concentration (ICNC) remains unresolved and limits our understanding of ice formation and hence precipitation amount, location and intensity. Enhanced ice formation through secondary ice production (SIP) could be accounting for this discrepancy. Here, we present the results from a sensitivity model study in the Eastern Swiss Alps with additional simulated in-cloud SIP on precipitation formation and consequently on surface precipitation. The SIP processes considered include rime splintering, droplet shattering during freezing and breakup through ice-ice collisions. We simulated the passage of a cold front at Gotschnagrat, a peak at 2281 m above sea level (a.s.l.), on 7 March 2019 with COSMO, at a 1 km horizontal resolution, as part of the RACLETS field campaign in the Davos region in Switzerland. The largest simulated difference in ICNC at the surface originated from the breakup simulations. Indeed, breakup caused a 1 to 3 order of magnitude increase in ICNC compared to SIP from rime splintering or without SIP processes in the control simulations. The ICNCs from the collisional breakup simulations at Gotschnagrat were in better agreement with the ICNC concentrations measured on a gondola near the surface. However, these simulations were not able to reproduce the ice crystal habits near the surface. Enhanced ICNCs from collisional breakup reduced localized regions of higher precipitation and thereby improving the model performance in terms of surface precipitation over the domain.
DOI: 10.5258/soton/wp00663
title: wopr: An R package to query the WorldPop Open Population Repository, version 0.1.0

description: wopr is an R package that provides API access to the WorldPop Open Population Repository so users can download population data, query specific locations and demographic groups, and get robust statistical estimates of uncertainty.
DOI: 10.5523/bris.3izox36nrlotg2papldp8lyfjc
title: Bionic Glove - RA-L 2021

description: This data supports the paper titled: "B:Ionic Glove: A Soft Smart Wearable Sensory Feedback Device for Upper Limb Robotic Prostheses" Authors: Simons, M. F., Digumarti, K. M., Le, N. H., Chen, H-Y., Carreira, S. C., Zaghloul, N. S. S., Diteesawat, R. S., Garrad, M., Conn, A. T., Kent, C., Rossiter, J. Contact: melanie.simons@bristol.ac.uk ======================================== The paper has been accepted for publication in the IEEE Robotics and Automation Letters (RA-L). ========================================
DOI: 10.6084/m9.figshare.7405799
title: Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits

description: African indigenous cattle breeds have been reared within the continent for millennia. Due to the harsh tropical environmental conditions (e.g. sever disease and parasite prevalence, high temperature, feed and water scarcity) where they evolved, they have developed various levels of tropical environment adaptation attributes. In order to explore the genomic signatures of tropical environment adaptation in African cattle, we compared the whole genomes of East African Indicus cattle breeds with European and Asian Taurine cattle breeds using XP-EHH and XP-CLR population statistical methods. Several genes involved in various biological processes and pathways related to domestication and behavior (dopaminergic and glutamatergic synapse), feeding and metabolism (gastric acid secretion, metabolic pathways), thermotolerance (sphingolipid and Wnt signaling), immune system response (T cell receptor signaling), and growth and reproduction (osteoblast differentiation, fibroblast migration) were identified from our genome analysis. Genes associated with tick and parasite resistance traits such as keratin genes, collagen genes, calcium signaling, and tumor necrosis factor proteins were also identified. The genes and pathways identified in this study improve our understanding of the biological mechanisms of tropical environment adaptation of African Indicus cattle breeds, which may allow us to use them for genomic selection programs. This result presents a basis for further study and may help to develop vaccines for tick and gastrointestinal parasite challenge.
DOI: 10.6084/m9.figshare.7405799.v2
title: Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits

description: African indigenous cattle breeds have been reared within the continent for millennia. Due to the harsh tropical environmental conditions (e.g. sever disease and parasite prevalence, high temperature, feed and water scarcity) where they evolved, they have developed various levels of tropical environment adaptation attributes. In order to explore the genomic signatures of tropical environment adaptation in African cattle, we compared the whole genomes of East African Indicus cattle breeds with European and Asian Taurine cattle breeds using XP-EHH and XP-CLR population statistical methods. Several genes involved in various biological processes and pathways related to domestication and behavior (dopaminergic and glutamatergic synapse), feeding and metabolism (gastric acid secretion, metabolic pathways), thermotolerance (sphingolipid and Wnt signaling), immune system response (T cell receptor signaling), and growth and reproduction (osteoblast differentiation, fibroblast migration) were identified from our genome analysis. Genes associated with tick and parasite resistance traits such as keratin genes, collagen genes, calcium signaling, and tumor necrosis factor proteins were also identified. The genes and pathways identified in this study improve our understanding of the biological mechanisms of tropical environment adaptation of African Indicus cattle breeds, which may allow us to use them for genomic selection programs. This result presents a basis for further study and may help to develop vaccines for tick and gastrointestinal parasite challenge.
DOI: 10.6084/m9.figshare.7405799.v1
title: Exploring the genomes of East African Indicine cattle breeds reveals signature of selection for tropical environmental adaptation traits

description: African indigenous cattle breeds have been reared within the continent for millennia. Due to the harsh tropical environmental conditions (e.g. sever disease and parasite prevalence, high temperature, feed and water scarcity) where they evolved, they have developed various levels of tropical environment adaptation attributes. In order to explore the genomic signatures of tropical environment adaptation in African cattle, we compared the whole genomes of East African Indicus cattle breeds with European and Asian Taurine cattle breeds using XP-EHH and XP-CLR population statistical methods. Several genes involved in various biological processes and pathways related to domestication and behavior (dopaminergic and glutamatergic synapse), feeding and metabolism (gastric acid secretion, metabolic pathways), thermotolerance (sphingolipid and Wnt signaling), immune system response (T cell receptor signaling), and growth and reproduction (osteoblast differentiation, fibroblast migration) were identified from our genome analysis. Genes associated with tick and parasite resistance traits such as keratin genes, collagen genes, calcium signaling, and tumor necrosis factor proteins were also identified. The genes and pathways identified in this study improve our understanding of the biological mechanisms of tropical environment adaptation of African Indicus cattle breeds, which may allow us to use them for genomic selection programs. This result presents a basis for further study and may help to develop vaccines for tick and gastrointestinal parasite challenge.
DOI: 10.6084/m9.figshare.11473398.v2
title: Microbiological quality of some common dairy beverages available in Dhaka University campus of Bangladesh

description: Dairy beverages are nutritious and also highly susceptible to bacterial contamination posing a threat to human health. In recent years, production and consumption of dairy beverages are rapidly increasing in Bangladesh; however, the presence of bacteria including human pathogens in commonly consumed dairy beverages has not been evaluated before. Here, we focused on microbiological quality of some dairy beverages available in Dhaka University campus. We examined 25 samples from five different items locally named as Lassi, Labang, Borhani, Pistachio nut sherbet, and Strawberry milkshake. Non-selective medium PCA and different selective agar media such as MacConkey, SS, EMB, and TCBS, and Cooked Meat were used for isolation. Antibiotic resistance was assessed by disk diffusion method against Ampicillin, Colistin, Ciprofloxacin, Levofloxacin, Ceftriaxon, and Gentamycin. In PCA medium, Labang and Strawberry milkshake, respectively, showed the highest (3.6 × 10<sup>7</sup> CFU/mL) and the lowest (1.76 × 10<sup>3</sup> CFU/mL) bacterial count. In MacConkey and EMB media, the highest bacterial growths were, respectively, shown by Pistachio nut sherbet (1.22 × 10<sup>4</sup> CFU/mL) and Lassi (2.96 × 10<sup>3</sup> CFU/mL) whereas no growth was observed for Borhani. Strawberry milkshake was found with the highest bacterial prevalence such as <i>E. coli, Klebsiella, Proteus, Pseudomonas Bacillus, Micrococcus</i>, and <i>Streptococcus</i> whereas Borhani and Labang contained the lowest variety of bacteria. Isolates such as <i>Shigella, Aeromonas, Micrococcus, Bacillus, Streptococcus,</i> and <i>Proteus</i> were multi-drug resistant to Ampicillin and Colistin. Findings indicated that examined samples contained health risk factor. Findings may help relevant stakeholders to consider food safety issues of dairy beverages during processing, marketing, and consumption.
DOI: 10.6084/m9.figshare.11473398
title: Microbiological quality of some common dairy beverages available in Dhaka University campus of Bangladesh

description: Dairy beverages are nutritious and also highly susceptible to bacterial contamination posing a threat to human health. In recent years, production and consumption of dairy beverages are rapidly increasing in Bangladesh; however, the presence of bacteria including human pathogens in commonly consumed dairy beverages has not been evaluated before. Here, we focused on microbiological quality of some dairy beverages available in Dhaka University campus. We examined 25 samples from five different items locally named as Lassi, Labang, Borhani, Pistachio nut sherbet, and Strawberry milkshake. Non-selective medium PCA and different selective agar media such as MacConkey, SS, EMB, and TCBS, and Cooked Meat were used for isolation. Antibiotic resistance was assessed by disk diffusion method against Ampicillin, Colistin, Ciprofloxacin, Levofloxacin, Ceftriaxon, and Gentamycin. In PCA medium, Labang and Strawberry milkshake, respectively, showed the highest (3.6 × 10<sup>7</sup> CFU/mL) and the lowest (1.76 × 10<sup>3</sup> CFU/mL) bacterial count. In MacConkey and EMB media, the highest bacterial growths were, respectively, shown by Pistachio nut sherbet (1.22 × 10<sup>4</sup> CFU/mL) and Lassi (2.96 × 10<sup>3</sup> CFU/mL) whereas no growth was observed for Borhani. Strawberry milkshake was found with the highest bacterial prevalence such as <i>E. coli, Klebsiella, Proteus, Pseudomonas Bacillus, Micrococcus</i>, and <i>Streptococcus</i> whereas Borhani and Labang contained the lowest variety of bacteria. Isolates such as <i>Shigella, Aeromonas, Micrococcus, Bacillus, Streptococcus,</i> and <i>Proteus</i> were multi-drug resistant to Ampicillin and Colistin. Findings indicated that examined samples contained health risk factor. Findings may help relevant stakeholders to consider food safety issues of dairy beverages during processing, marketing, and consumption.
DOI: 10.5258/soton/wp00661
title: Bottom-up gridded population estimates for individual age-sex groups in Nigeria, version 1.2.1

description: Bottom-up gridded population estimates for individual age-sex groups in Nigeria, version 1.2.1
DOI: 10.5281/zenodo.4561771
title: Will mangroves continue to expand? Predicting future ecogeomorphic evolution in an urbanized environment to natural and anthropogenic pressures

description: Data for Feng et al., "Will mangroves continue to expand? Predicting future ecogeomorphic evolution in an urbanized environment to natural and anthropogenic pressures". The dataset contains five types of data, namely (1) modeled output of the long term ecogeomorphic simulation with mangroves, (2) modeled output of the long term morphodynamic simulation without mangroves, (3) meteorological and hydrological data, (4) remote sensing images and (5) modeled output of sensitivity analysis.
DOI: 10.5281/zenodo.4561770
title: Will mangroves continue to expand? Predicting future ecogeomorphic evolution in an urbanized environment to natural and anthropogenic pressures

description: Data for Feng et al., "Will mangroves continue to expand? Predicting future ecogeomorphic evolution in an urbanized environment to natural and anthropogenic pressures". The dataset contains five types of data, namely (1) modeled output of the long term ecogeomorphic simulation with mangroves, (2) modeled output of the long term morphodynamic simulation without mangroves, (3) meteorological and hydrological data, (4) remote sensing images and (5) modeled output of sensitivity analysis.
DOI: 10.7277/gk9h-3r37
title: Multi-Site Soil-Structure-Foundation Interaction Test (MISST):Lehigh (NEES-2006-0120)

description: &lt;p&gt;&lt;strong&gt;Title:&lt;/strong&gt; Multi-Site Soil-Structure-Foundation Interaction Test (MISST):Lehigh (NEES-2006-0120)&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Year Of Curation: &lt;/strong&gt;2011&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Description: &lt;/strong&gt;The Multi-Site Soil-Structure-Foundation Interaction Test (MISST) was performed on May 16 and 17, 2006. MISST, a Pre-NEESR project, was conducted by collaborating partners at the University of Illinois at Urbana-Champaign (UIUC), Lehigh University, and Rensselaer Polytechnic Institute (RPI) and was established to provide a realistic test-bed application in which to verify and extend all components of NEESgrid as well as all components of the sites taking part in the distributed simulation. Concurrently, it has extended and represents the current state-of-the-art in distributed and integrated experimental-analytical earthquake engineering simulation. MISST was established to extend and build upon the Multi-Site Online Simulation Test (MOST) which took place on July 30, 2003 (Spencer et al, 2004). MOST was the first geographically distributed experimental simulation to make use of the relatively young George E. Brown, Jr. Network for Earthquake Engineering Simulation (NEES). The MOST simulation utilized NEESgrid, the NEES cyber infrastructure, to combine a numerical model run at the National Center for Supercomputing Applications (NCSA) with experimental tests being conducted at UIUC and the University of Colorado at Boulder. Similarly, MISST applied this distributed hybrid approach to simulate the response of a bridge structure which was partitioned into five separate modules distributed at three of NEES equipment sites: namely, UIUC, Lehigh, and RPI.&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Award: &lt;/strong&gt;http://www.nsf.gov/awardsearch/showAward?AWD_ID=0407555&lt;/p&gt; &lt;p&gt;&lt;strong&gt;PIs &amp; CoPIs: &lt;/strong&gt;James Ricles&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Dates: &lt;/strong&gt;May 03, 2004 - July 06, 2006&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Organizations: &lt;/strong&gt;Lehigh University, PA, United States, RPI, San Diego Supercomputer Center, University of Illinois at Urbana-Champaign, IL, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Facilities: &lt;/strong&gt;RPI, San Diego Supercomputer Center, Lehigh University, PA, United States&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Sponsor: &lt;/strong&gt;NSF - 0407555&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Keywords: &lt;/strong&gt;Soil Structure Interaction, Seismic Performance, Simulation&lt;/p&gt; &lt;p&gt;&lt;strong&gt;Publications: &lt;/strong&gt;&quot;Multi-Site Soil-Structure-Foundation Interaction Test (MISST)&quot;&lt;/p&gt; &lt;nb:citations&gt;&lt;/nb:citations&gt;
DOI: 10.5258/soton/wp00658
title: Bottom-up gridded population estimates for the Kinshasa, Kongo-Central, Kwango, Kwilu, and Mai-Ndombe provinces in the Democratic Republic of the Congo, version 1.0

description: These data were produced by the WorldPop Research Group at the University of Southampton. This work was part of the GRID3 project with funding from the Bill and Melinda Gates Foundation and the United Kingdom’s Department for International Development (OPP1182408). Project partners included the United Nations Population Fund, Center for International Earth Science Information Network in the Earth Institute at Columbia University, and the Flowminder Foundation. These data may be distributed using a Creative Commons Attribution Share-Alike 4.0 License. Contact release@worldpop.org for more information.