cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.6044681
title: Raw data of itraq.rar

description: iTRAQ Proteomic Analysis of Potential Salivary Biomarkers of Patients with Glomerulonephritis
DOI: 10.6084/m9.figshare.6044642
title: Dataset for: Ecology shapes the evolutionary trade-off between predator avoidance and defence in coral reef butterflyfishes

description: Antipredator defensive traits are thought to trade-off evolutionarily with traits that facilitate predator avoidance. However, complexity and scale have precluded tests of this prediction in many groups, including fishes. Using a macroevolutionary approach we test this prediction in butterflyfishes, an iconic group of coral reef fishes with diverse social behaviours, foraging strategies and antipredator adaptations. We find that several antipredator traits have evolved adaptively, dependent primarily on foraging strategy. We identify a previously unrecognized axis of diversity in butterflyfishes where species with robust morphological defences have riskier foraging strategies and lack sociality, while species with reduced morphological defences feed in familiar territories, have adaptations for quick escapes, and benefit from the vigilance provided by sociality. Further, we find evidence for the constrained evolution of fin spines among species that graze solely on corals, highlighting the importance of corals, as both prey and structural refuge, in shaping fish morphology.
DOI: 10.6084/m9.figshare.6044618
title: Supplementary material_BacTag.xlsx

description: Supplementary Materials for BacTag paper
DOI: 10.6084/m9.figshare.6044618.v1
title: Supplementary material_BacTag.xlsx

description: Supplementary Materials for BacTag paper
DOI: 10.4225/03/5ababec6000e0
title: Supplementary Figure 2, 3, &4

description: Statistics files for Supplementary figures 2, 3, &4
DOI: 10.6084/m9.figshare.6044525
title: ferroelectric search misc. mongo databases

description: These files are included for archiving purposes. They are not intended for the general user.<br>These are compressed tgz folders generated by mongodump for multiple mongodbs used to create the ferroelectric_dataset json files. <br>These databases include the distortion databases generated from Bilbao Crystallographic Server queries, the Fireworks launchpad database (merged from multiple databases), and the full VASP calculation database (merged from multiple).<br>loadDBs.sh is included to upload the mongodumps to a mongodb after the files are untarred (tar -xvzf filename.tgz).
DOI: 10.6084/m9.figshare.6044222
title: <i>Mandaphon nadra</i>, gen. et sp. nov., a new procolophonid from the Manda Beds of Tanzania

description: A collaborative field work program in the Triassic of Tanzania and Zambia has produced a plethora of new fossil material. Parareptiles, however, are rare, with only one procolophonoid specimen found to date. In 2012, a new procolophonid parareptile, <i>Mandaphon nadra</i>, gen. et sp. nov., was discovered. The single specimen, consisting of a skull and partial postcranium, displays the autapomorphy of two raised, lozenge-shaped bosses on the quadratojugal. Whereas the posterior maxillary teeth are small, labiolingually expanded, and vaguely bicuspid, the premaxillary teeth are much larger and conical, a trait more commonly found in leptopleuronine procolophonids. The large, lozenge-shaped bosses on the quadratojugal do not correspond to additional ossification in other areas in the skull. In a phylogenetic analysis of procolophonoid relationships consisting of 59 characters and 28 procolophonoid taxa, <i>Mandaphon</i> appears within a poorly supported but monophyletic Leptopleuroninae, the first of this clade found in Africa. The presence of <i>Mandaphon</i> along with the procolophonoid <i>Ruhuhuaria</i> in the Manda Beds is only the third known co-occurrence of members of these two groups, with most non-procolophonid procolophonoids restricted to the Permian and Early Triassic. http://zoobank.org/urn:lsid:zoobank.org:pub:002EE9DA-1D38-41C5-9B0F-2A4BA7A90686 SUPPLEMENTAL DATA–Supplemental materials are available for this article for free at www.tandfonline.com/UJVP. Citation for this article: Tsuji, L. A. 2018. <i>Mandaphon nadra</i>, gen. et sp. nov., a new procolophonid from the Manda Beds of Tanzania; pp. 80–87 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044222.v1
title: <i>Mandaphon nadra</i>, gen. et sp. nov., a new procolophonid from the Manda Beds of Tanzania

description: A collaborative field work program in the Triassic of Tanzania and Zambia has produced a plethora of new fossil material. Parareptiles, however, are rare, with only one procolophonoid specimen found to date. In 2012, a new procolophonid parareptile, <i>Mandaphon nadra</i>, gen. et sp. nov., was discovered. The single specimen, consisting of a skull and partial postcranium, displays the autapomorphy of two raised, lozenge-shaped bosses on the quadratojugal. Whereas the posterior maxillary teeth are small, labiolingually expanded, and vaguely bicuspid, the premaxillary teeth are much larger and conical, a trait more commonly found in leptopleuronine procolophonids. The large, lozenge-shaped bosses on the quadratojugal do not correspond to additional ossification in other areas in the skull. In a phylogenetic analysis of procolophonoid relationships consisting of 59 characters and 28 procolophonoid taxa, <i>Mandaphon</i> appears within a poorly supported but monophyletic Leptopleuroninae, the first of this clade found in Africa. The presence of <i>Mandaphon</i> along with the procolophonoid <i>Ruhuhuaria</i> in the Manda Beds is only the third known co-occurrence of members of these two groups, with most non-procolophonid procolophonoids restricted to the Permian and Early Triassic. http://zoobank.org/urn:lsid:zoobank.org:pub:002EE9DA-1D38-41C5-9B0F-2A4BA7A90686 SUPPLEMENTAL DATA–Supplemental materials are available for this article for free at www.tandfonline.com/UJVP. Citation for this article: Tsuji, L. A. 2018. <i>Mandaphon nadra</i>, gen. et sp. nov., a new procolophonid from the Manda Beds of Tanzania; pp. 80–87 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044219
title: The anatomy of <i>Teleocrater Rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic)

description: Bird-line archosaurs (= Avemetatarsalia, the clade containing birds, dinosaurs, pterosaurs, and their kin) originated in the Triassic Period. However, the earliest evolution of this group is poorly documented because fossils are extremely rare and consist mostly of postcrania. Here, we document the osteology of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Middle Triassic Lifua Member of the Manda Beds of the Ruhuhu Basin, southwestern Tanzania. Material of <i>Teleocrater rhadinus</i> includes the holotype partial skeleton comprising a single individual, including cervical, trunk, and caudal vertebrae, pectoral, pelvic, forelimb, and hind limb material, and referred specimens representing parts (skull elements, vertebrae, pectoral, pelvic, and limb elements) of at least three other individuals collected from a bonebed. Character states of the skull elements, vertebrae, girdles, and limbs indicate that <i>Teleocrater rhadinus</i> represents the first documented non-ornithodiran avemetatarsalian known from well-preserved, associated material. Furthermore, <i>Teleocrater rhadinus</i> forms part of a newly recognized clade, Aphanosauria, which also contains formerly enigmatic archosaur taxa from across Pangea, including <i>Dongusuchus efremovi</i> from the Middle Triassic of Russia, <i>Yarasuchus deccanensis</i> from the Middle Triassic of India, and <i>Spondylosoma absconditum</i> from the ?Middle Triassic of Brazil. This new clade and other new discoveries from the Middle to Late Triassic elucidate the sequence of character acquisitions at the base of Avemetatarsalia and fill a crucial gap in the understanding of the anatomical transformations that enabled dinosaurs to flourish later in the Mesozoic. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Nesbitt, S. J., R. J. Butler, M. D. Ezcurra, A. J. Charig, and P. M. Barrett. 2018. The anatomy of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic); pp. 142–177 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044219.v2
title: The anatomy of <i>Teleocrater Rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic)

description: Bird-line archosaurs (= Avemetatarsalia, the clade containing birds, dinosaurs, pterosaurs, and their kin) originated in the Triassic Period. However, the earliest evolution of this group is poorly documented because fossils are extremely rare and consist mostly of postcrania. Here, we document the osteology of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Middle Triassic Lifua Member of the Manda Beds of the Ruhuhu Basin, southwestern Tanzania. Material of <i>Teleocrater rhadinus</i> includes the holotype partial skeleton comprising a single individual, including cervical, trunk, and caudal vertebrae, pectoral, pelvic, forelimb, and hind limb material, and referred specimens representing parts (skull elements, vertebrae, pectoral, pelvic, and limb elements) of at least three other individuals collected from a bonebed. Character states of the skull elements, vertebrae, girdles, and limbs indicate that <i>Teleocrater rhadinus</i> represents the first documented non-ornithodiran avemetatarsalian known from well-preserved, associated material. Furthermore, <i>Teleocrater rhadinus</i> forms part of a newly recognized clade, Aphanosauria, which also contains formerly enigmatic archosaur taxa from across Pangea, including <i>Dongusuchus efremovi</i> from the Middle Triassic of Russia, <i>Yarasuchus deccanensis</i> from the Middle Triassic of India, and <i>Spondylosoma absconditum</i> from the ?Middle Triassic of Brazil. This new clade and other new discoveries from the Middle to Late Triassic elucidate the sequence of character acquisitions at the base of Avemetatarsalia and fill a crucial gap in the understanding of the anatomical transformations that enabled dinosaurs to flourish later in the Mesozoic. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Nesbitt, S. J., R. J. Butler, M. D. Ezcurra, A. J. Charig, and P. M. Barrett. 2018. The anatomy of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic); pp. 142–177 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044219.v1
title: The anatomy of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic)

description: Bird-line archosaurs (= Avemetatarsalia, the clade containing birds, dinosaurs, pterosaurs, and their kin) originated in the Triassic Period. However, the earliest evolution of this group is poorly documented because fossils are extremely rare and consist mostly of postcrania. Here, we document the osteology of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Middle Triassic Lifua Member of the Manda Beds of the Ruhuhu Basin, southwestern Tanzania. Material of <i>Teleocrater rhadinus</i> includes the holotype partial skeleton comprising a single individual, including cervical, trunk, and caudal vertebrae, pectoral, pelvic, forelimb, and hind limb material, and referred specimens representing parts (skull elements, vertebrae, pectoral, pelvic, and limb elements) of at least three other individuals collected from a bonebed. Character states of the skull elements, vertebrae, girdles, and limbs indicate that <i>Teleocrater rhadinus</i> represents the first documented non-ornithodiran avemetatarsalian known from well-preserved, associated material. Furthermore, <i>Teleocrater rhadinus</i> forms part of a newly recognized clade, Aphanosauria, which also contains formerly enigmatic archosaur taxa from across Pangea, including <i>Dongusuchus efremovi</i> from the Middle Triassic of Russia, <i>Yarasuchus deccanensis</i> from the Middle Triassic of India, and <i>Spondylosoma absconditum</i> from the ?Middle Triassic of Brazil. This new clade and other new discoveries from the Middle to Late Triassic elucidate the sequence of character acquisitions at the base of Avemetatarsalia and fill a crucial gap in the understanding of the anatomical transformations that enabled dinosaurs to flourish later in the Mesozoic. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Nesbitt, S. J., R. J. Butler, M. D. Ezcurra, A. J. Charig, and P. M. Barrett. 2018. The anatomy of <i>Teleocrater rhadinus</i>, an early avemetatarsalian from the lower portion of the Lifua Member of the Manda Beds (Middle Triassic); pp. 142–177 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044216
title: Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu Basins of southern Africa

description: The Permian-Triassic mass extinction (PTME) was one of the transformative events of the Phanerozoic, marked by extinction, post-Permian transformation of surviving ecosystems, and the formation of new communities. The South African Karoo Basin has served as the primary source of data on the terrestrial component of these events, but its global applicability remains poorly known. Here, we compare Permian-Triassic communities of the Karoo Basin with those from the Luangwa and Ruhuhu basins of Zambia and Tanzania, respectively, analyzing their functional structures and simulating dynamic responses to environmental perturbation. Results show that compositional similarities of late Permian communities among the basins underlie similarities in their dynamics and resistance to secondary extinction. The Karoo Basin ecosystem also displays evidence of a transformation to increased resistance during the late Permian. Although the Karoo Basin ecosystem was reduced significantly by the PTME, structural features of that resistance persisted into the Early Triassic, facilitated by a greater susceptibility to extinction of small-body-sized amniotes and large carnivorous amniotes. It was undone by the initial stages of postextinction restructuring. Continued evolution of the Triassic ecosystem led to a recovery of resistance, but in a community compositionally dissimilar from its Permian antecedents. Likewise, the upper part of the Lifua Member of the Manda Beds (Middle Triassic) of Tanzania was structurally distinct from the Karoo Basin communities but displayed similar dynamics. The recurrence and convergence of communities with different histories toward similar dynamics suggest that there are taxon-independent norms of community assembly and function operating on geological timescales. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Roopnarine, P. D., K. D. Angielczyk, S. Olroyd, S. J. Nesbitt, J. Botha-Brink, B. R. Peecook, M. O. Day, and R. M. H. Smith. 2018. Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu basins of southern Africa; pp. 254–272 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044216.v2
title: Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu Basins of southern Africa

description: The Permian-Triassic mass extinction (PTME) was one of the transformative events of the Phanerozoic, marked by extinction, post-Permian transformation of surviving ecosystems, and the formation of new communities. The South African Karoo Basin has served as the primary source of data on the terrestrial component of these events, but its global applicability remains poorly known. Here, we compare Permian-Triassic communities of the Karoo Basin with those from the Luangwa and Ruhuhu basins of Zambia and Tanzania, respectively, analyzing their functional structures and simulating dynamic responses to environmental perturbation. Results show that compositional similarities of late Permian communities among the basins underlie similarities in their dynamics and resistance to secondary extinction. The Karoo Basin ecosystem also displays evidence of a transformation to increased resistance during the late Permian. Although the Karoo Basin ecosystem was reduced significantly by the PTME, structural features of that resistance persisted into the Early Triassic, facilitated by a greater susceptibility to extinction of small-body-sized amniotes and large carnivorous amniotes. It was undone by the initial stages of postextinction restructuring. Continued evolution of the Triassic ecosystem led to a recovery of resistance, but in a community compositionally dissimilar from its Permian antecedents. Likewise, the upper part of the Lifua Member of the Manda Beds (Middle Triassic) of Tanzania was structurally distinct from the Karoo Basin communities but displayed similar dynamics. The recurrence and convergence of communities with different histories toward similar dynamics suggest that there are taxon-independent norms of community assembly and function operating on geological timescales. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Roopnarine, P. D., K. D. Angielczyk, S. Olroyd, S. J. Nesbitt, J. Botha-Brink, B. R. Peecook, M. O. Day, and R. M. H. Smith. 2018. Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu basins of southern Africa; pp. 254–272 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).
DOI: 10.6084/m9.figshare.6044216.v1
title: Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu basins of southern Africa

description: The Permian-Triassic mass extinction (PTME) was one of the transformative events of the Phanerozoic, marked by extinction, post-Permian transformation of surviving ecosystems, and the formation of new communities. The South African Karoo Basin has served as the primary source of data on the terrestrial component of these events, but its global applicability remains poorly known. Here, we compare Permian-Triassic communities of the Karoo Basin with those from the Luangwa and Ruhuhu basins of Zambia and Tanzania, respectively, analyzing their functional structures and simulating dynamic responses to environmental perturbation. Results show that compositional similarities of late Permian communities among the basins underlie similarities in their dynamics and resistance to secondary extinction. The Karoo Basin ecosystem also displays evidence of a transformation to increased resistance during the late Permian. Although the Karoo Basin ecosystem was reduced significantly by the PTME, structural features of that resistance persisted into the Early Triassic, facilitated by a greater susceptibility to extinction of small-body-sized amniotes and large carnivorous amniotes. It was undone by the initial stages of postextinction restructuring. Continued evolution of the Triassic ecosystem led to a recovery of resistance, but in a community compositionally dissimilar from its Permian antecedents. Likewise, the upper part of the Lifua Member of the Manda Beds (Middle Triassic) of Tanzania was structurally distinct from the Karoo Basin communities but displayed similar dynamics. The recurrence and convergence of communities with different histories toward similar dynamics suggest that there are taxon-independent norms of community assembly and function operating on geological timescales. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Roopnarine, P. D., K. D. Angielczyk, S. Olroyd, S. J. Nesbitt, J. Botha-Brink, B. R. Peecook, M. O. Day, and R. M. H. Smith. 2018. Comparative ecological dynamics of Permian-Triassic communities from the Karoo, Luangwa, and Ruhuhu basins of southern Africa; pp. 254–272 in C. A. Sidor and S. J. Nesbitt (eds.), Vertebrate and Climatic Evolution in the Triassic Rift Basins of Tanzania and Zambia. Society of Vertebrate Paleontology Memoir 17. Journal of Vertebrate Paleontology 37(6, Supplement).