cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7591310.v1
title: Idioblasts formation and essential oil production in irrigated Piper aduncum

description: ABSTRACT The growing of Piper aduncum for essential oil extraction has increased, but there is a lack of basic information about its management and cultivation, which allows the productivity and quality of the oil, in order to attend the market demands. This study aimed to evaluate the relation between the production of essential oils from P. aduncum and soil water pressure heads (20 kPa, 40 kPa, 60 kPa, 100 kPa and non-irrigated). The assessment comprised the quantification of idioblasts and the production of essential oil extracted from leaves of cultivated plants. The variation in the soil water pressure head alters the amount of idioblasts in P. aduncum leaves, with impacts on the essential oil production. A soil water pressure head range of 20-60 kPa is sufficient for this species to express the highest amount of idioblasts and the highest level of essential oil production. The species adapts itself to different water availability conditions in the soil. Under stress conditions, due to water deficit or excess, the production of essential oil is reduced.
DOI: 10.6084/m9.figshare.7591301
title: Detection of sexually transmitted infections at a Brazilian gynecology center: high prevalence of co-infections

description: ABSTRACT Introduction: Sexually transmitted infections (STI) remain a major public health problem and surveillance is crucial for prevention and control strategies. Objective: Our aim was to assess the prevalence of STI in a reference center for gynecology in Rio de Janeiro, Brazil. Materials and methods: It is a cross-sectional study conducted between August 2016 and June 2017. Whole blood and cervical cells were collected from 62 women and tested for human papillomavirus (HPV), human immunodeficiency virus (HIV), syphilis, chlamydia, gonorrhea and herpes simples virus 1 and 2 (HSV-1/2). Cervical lesions were diagnosed by cytopathology and in some patients by colposcopy (79%). Other STI were evaluated during clinical examination. Results: Cervical lesions were detected by cytopathology examinations in 46.8% of patients; those with a history of four sexual partners were at higher risk of developing them. There was moderate agreement between the cytopathology e colposcopy results (Kappa = 0.69). The prevalence of HSV (96.7%), syphilis (6.4%) and HIV (3.2%) were higher than that described in the literature, while the prevalence of chlamydia (6.4%) and gonorrhea (1.6%) were similar. HPV was detected in 53.2% of women, 32.3% of which were infected by HPV 16. In the context of co-infections, 38 women (61.3%) presented more than one STI. Conclusion: Since most of the women analyzed were affected by more than one STI, our results suggest that routine screening for these infections at health centers would help in early detection, treatment and prevention of these infections. These measures would also impact on patients’ cervical cancer control.
DOI: 10.6084/m9.figshare.7591304.v1
title: Growth and quality of Garcinia humilis seedlings as a function of substrate and shading level

description: ABSTRACT The successful establishment of a Garcinia humilis orchard depends on planting high-quality seedlings. This study aimed to evaluate the effects of the shading level (0 %, 18 % and 50 %) and substrate composition on the formation of G. humilis seedlings. Four substrates (S) were evaluated combining different proportions (v:v) of soil (SO), cattle manure (CM), commercial substrate (CS), sand (SA) and fine grain vermiculite (FV): S1 = 0 % SO + 45 % CM + 20 % CS + 20 % SA + 15 % FV; S2 = 15 % SO + 30 % CM + 20 % CS + 20 % SA + 15 % FV; S3 = 30 % SO + 15 % CM + 20 % CS + 20 % SA + 15 % FV; S4 = 45 % SO + 0 % CM + 20 % CS + 20 % SA + 15 % FV. The experiment was conducted in a completely randomized design in each environment, being the environments compared by a joint analysis. The G. humilis seedlings with the highest quality were obtained in the environment with a 50 % shading screen. G. humilis seedlings do not grow when exposed to full sunlight and, therefore, the seedling production of this species with direct solar radiation, without some shading level, should not be recommended. Different combinations from the mixture of soil, cattle manure, commercial substrate, sand and fine grain vermiculite may be used in the formulation of substrates for G. humilis seedlings.
DOI: 10.7284/118953
title: INS (Inertial Navigation System) data collected during research cruise FK140420 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591235
title: tpl-fsLR

description: A BIDS-like view of HCP Pipeline's fs_LR template
DOI: 10.6084/m9.figshare.7591301.v1
title: Detection of sexually transmitted infections at a Brazilian gynecology center: high prevalence of co-infections

description: ABSTRACT Introduction: Sexually transmitted infections (STI) remain a major public health problem and surveillance is crucial for prevention and control strategies. Objective: Our aim was to assess the prevalence of STI in a reference center for gynecology in Rio de Janeiro, Brazil. Materials and methods: It is a cross-sectional study conducted between August 2016 and June 2017. Whole blood and cervical cells were collected from 62 women and tested for human papillomavirus (HPV), human immunodeficiency virus (HIV), syphilis, chlamydia, gonorrhea and herpes simples virus 1 and 2 (HSV-1/2). Cervical lesions were diagnosed by cytopathology and in some patients by colposcopy (79%). Other STI were evaluated during clinical examination. Results: Cervical lesions were detected by cytopathology examinations in 46.8% of patients; those with a history of four sexual partners were at higher risk of developing them. There was moderate agreement between the cytopathology e colposcopy results (Kappa = 0.69). The prevalence of HSV (96.7%), syphilis (6.4%) and HIV (3.2%) were higher than that described in the literature, while the prevalence of chlamydia (6.4%) and gonorrhea (1.6%) were similar. HPV was detected in 53.2% of women, 32.3% of which were infected by HPV 16. In the context of co-infections, 38 women (61.3%) presented more than one STI. Conclusion: Since most of the women analyzed were affected by more than one STI, our results suggest that routine screening for these infections at health centers would help in early detection, treatment and prevention of these infections. These measures would also impact on patients’ cervical cancer control.
DOI: 10.7284/115758
title: Meteorological Station data collected during research cruise FK140420 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591205
title: Cell migration tracking code

description: Custom MATLAB (written with 2014b) code used to track cell nuclei during cell migration, based on the IDL Particle Tracking code written by J. Crocker and colleagues.
DOI: 10.7284/115755
title: Splitbeam Echosounder data collected during research cruise FK140420 using a Kongsberg EK60 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591193
title: tpl-fsaverage

description: FreeSurfer's fsaverage
DOI: 10.6084/m9.figshare.7591193.v1
title: tpl-fsaverage

description: FreeSurfer's fsaverage
DOI: 10.7284/115741
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK140420 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591187
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, and a file containing select toxin loci, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1 4) a fasta file containing contigs from the second genome assembly mentioned in the manuscript 5) unicycler logs from both assemblies mentioned in the manuscript 6) .ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.6084/m9.figshare.7591205.v1
title: fibertrack.m

description: Custom MATLAB (written with 2014b) code used to track cell nuclei during cell migration, based on the IDL Particle Tracking code written by J. Crocker and colleagues.
DOI: 10.7284/121424
title: TSG (Thermosalinograph) data collected during research cruise FK140420 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591187.v1
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1<br>.ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.7284/115580
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK140502 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc13qt9y
title: CCDC 1034820: Experimental Crystal Structure Determination

description: Related Article: Hanghong Fan, Sufen Zou, Jianhua Gao, Ru Chen, Qingfang Ma, Wangjing Ma, Huarong Zhang, Guangjin Chen, Xinwei Huo, Zheyuan Liu, Yanfeng Dang, Wenping Hu|2020|J.Mater.Chem.C|8|11477|doi:10.1039/D0TC01390K
DOI: 10.7284/115732
title: Expendable Probe data collected during research cruise FK140502 using a Turo Quoll instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591187.v2
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, and a file containing select toxin loci, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1<br>.ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.6084/m9.figshare.7591187.v3
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, and a file containing select toxin loci, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1<br>.ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.7284/115601
title: Fluorometer data collected during research cruise FK140502 using a WET Labs ECO-FLNTU instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591187.v5
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, and a file containing select toxin loci, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1 4) a fasta file containing contigs from the second genome assembly mentioned in the manuscript 5) unicycler logs from both assemblies mentioned in the manuscript 6) .ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.6084/m9.figshare.7591187.v4
title: Pseudomonas syringae pv. pisi strain PP1 Annotation

description: Text files containing 1) P.syringae type III effector protein sequences in fasta format, and a file containing select toxin loci, used to query the PP1 genome 2) a file containing the results of type III effector annotation of strain PP1 3) a file containing the results of PHAST annotation of strain PP1 4) a fasta file containing contigs from the second genome assembly mentioned in the manuscript 5) unicycler logs from both assemblies mentioned in the manuscript 6) .ab1 and .seq files from Sanger sequencing using primers 646, 647, 648, 649, 657, and 658 to circularize the PP1 genome
DOI: 10.7284/115571
title: GNSS (Global Navigation Satellite System) data collected during research cruise FK140502 using a C&C C-Nav 3050 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115588
title: Gravimeter data collected during research cruise FK140502 using a Bell BGM-3 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118982
title: Gyrocompass data collected during research cruise FK140502 using a Raytheon STD 22 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/118954
title: INS (Inertial Navigation System) data collected during research cruise FK140502 using a Kongsberg Seapath 320 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7591058
title: Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot

description: Assembled transcriptomes and supplementary data related to phylogenetic analyses.<br>
DOI: 10.6084/m9.figshare.7591046
title: dsdata_entry_12202018.xlsx

description: TheThe goal of the study is to evaluate the effectiveness of native species revegetation for deterring colonization of invasive species in tidal wetland restoration sites. The experiment will be set up in a randomized complete block design, testing the effectiveness of revegetation with two native species, planted individually (one plot each) and in combination (one plot). Three replicates will be tested, and each replicate will contain a total of four 4 m x 4 m plots with a 1m buffer between each treatment, as depicted below. Experimental treatments will be randomized within each replicate.
DOI: 10.6084/m9.figshare.7591046.v1
title: dsdata_entry_12202018.xlsx

description: TheThe goal of the study is to evaluate the effectiveness of native species revegetation for deterring colonization of invasive species in tidal wetland restoration sites. The experiment will be set up in a randomized complete block design, testing the effectiveness of revegetation with two native species, planted individually (one plot each) and in combination (one plot). Three replicates will be tested, and each replicate will contain a total of four 4 m x 4 m plots with a 1m buffer between each treatment, as depicted below. Experimental treatments will be randomized within each replicate.
DOI: 10.6084/m9.figshare.7591058.v1
title: Phylogenomics of Aplacophora (Mollusca, Aculifera) and a solenogaster without a foot

description: Assembled transcriptomes and supplementary data related to phylogenetic analyses.<br>
DOI: 10.7284/115752
title: Magnetometer data collected during research cruise FK140502 using a Geometrics G-882 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115759
title: Meteorological Station data collected during research cruise FK140502 using a Gill MetPak Pro instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/115555
title: Multibeam Echosounder data collected during research cruise FK140502 using a Kongsberg EM302 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7590968
title: Publishing Geospatial Data as Linked Data: Graph Processing Techniques for Automated Feature Detection and Resolution within Hydrography GIS Products

description: Interesting, largely unexplored data analysis and information retrieval opportunities exist for GIS data. In their current form, traditional data usage patterns for data persisted in shapefiles or spatially-enabled relational databases are limited. Opportunities exist to achieve ESIP’s Winter 2019 theme of ‘<em>increasing the use and value of Earth science data and information’</em> by transforming geospatial data from their original formats into their Resource Description Framework (RDF) manifestation. This work establishes an innovative workflow enabling the publication for Geospatial data persisted in geospatially enabled databases (PostGIS and MonetDB), ESRI shapefiles and XML, GML, KML, JSON, GeoJSON and CSV documents as graphs of linked open geospatial data. This affords the capability to identify implicit connections between related data that wasn't previously linked e.g. automating the detection of features present within large hydrography datasets as well as smaller regional examples and resolving features in a consistent fashion. This previously unavailable capability is achieved through the use of a semantic technology stack which leverages well matured standards within the Semantic Web space such as RDF as the data model, GeoSPARQL as the data access language and International Resource Identifier’s (IRI) for uniquely identifying and referencing entities such as rivers, streams and other water bodies. In anticipation of NASA’s forthcoming Surface Water Ocean Topography (SWOT – https://swot.jpl.nasa.gov) mission, which once launched in 2021 will make NASA’s first-ever global survey of Earth’s surface water, this work uses Hydrography data products (USGS’s National Hydrography Dataset and other topically relevant examples) as the topic matter. The compelling result is a new, innovative data analysis and information retrieval capability which will increases the use and value of Earth science data (GIS) and information. This presentation was given at the Earth Science Information Partners (ESIP) Winter Meeting in January 2019.<br>
DOI: 10.7284/115556
title: Multibeam Echosounder data collected during research cruise FK140502 using a Kongsberg EM710 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7590968.v1
title: Publishing Geospatial Data as Linked Data: Graph Processing Techniques for Automated Feature Detection and Resolution within Hydrography GIS Products

description: Interesting, largely unexplored data analysis and information retrieval opportunities exist for GIS data. In their current form, traditional data usage patterns for data persisted in shapefiles or spatially-enabled relational databases are limited. Opportunities exist to achieve ESIP’s Winter 2019 theme of ‘<em>increasing the use and value of Earth science data and information’</em> by transforming geospatial data from their original formats into their Resource Description Framework (RDF) manifestation. This work establishes an innovative workflow enabling the publication for Geospatial data persisted in geospatially enabled databases (PostGIS and MonetDB), ESRI shapefiles and XML, GML, KML, JSON, GeoJSON and CSV documents as graphs of linked open geospatial data. This affords the capability to identify implicit connections between related data that wasn't previously linked e.g. automating the detection of features present within large hydrography datasets as well as smaller regional examples and resolving features in a consistent fashion. This previously unavailable capability is achieved through the use of a semantic technology stack which leverages well matured standards within the Semantic Web space such as RDF as the data model, GeoSPARQL as the data access language and International Resource Identifier’s (IRI) for uniquely identifying and referencing entities such as rivers, streams and other water bodies. In anticipation of NASA’s forthcoming Surface Water Ocean Topography (SWOT – https://swot.jpl.nasa.gov) mission, which once launched in 2021 will make NASA’s first-ever global survey of Earth’s surface water, this work uses Hydrography data products (USGS’s National Hydrography Dataset and other topically relevant examples) as the topic matter. The compelling result is a new, innovative data analysis and information retrieval capability which will increases the use and value of Earth science data (GIS) and information. This presentation was given at the Earth Science Information Partners (ESIP) Winter Meeting in January 2019.<br>
DOI: 10.7284/115742
title: SSV (Sound Speed Velocimeter) data collected during research cruise FK140502 using a Valeport MiniSVS instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121425
title: TSG (Thermosalinograph) data collected during research cruise FK140502 using a Sea-Bird SBE-45 instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7590914
title: Foreign language reading anxiety in a Chinese as a foreign language context

description: This study examined the foreign language (FL) reading anxiety level of learners of Chinese as a FL (n = 76) in the United States. Data from an FL reading anxiety survey, a background information survey and a face-to-face interview indicated that there was no significant difference in reading anxiety level among four course levels. In general, Chinese L2 learners experienced a medium level of reading anxiety. 100- and 400-level students experienced higher levels of reading anxiety compared to 200- and 300-level students. A regression model with background variables such as years of learning Chinese, heritage learner status, the number of foreign languages learned, and time spent in China significantly predicted learners’ reading anxiety levels and explained 15% of the variance in their reading anxiety. Worries relating to comprehension, unfamiliar topics, unknown pronunciation, and feeling uncomfortable reading aloud were identified as major sources of FL reading anxiety.
DOI: 10.5517/ccdc.csd.cc23rm1k
title: CCDC 1959108: Experimental Crystal Structure Determination

description: Related Article: Yanju Luo, Zhenguo Pang, Chuan Li, Kuan Chen, Xujun Zheng, Yan Huang, Zhiyun Lu|2020|J.Mater.Chem.C|8|11603|doi:10.1039/D0TC00738B
DOI: 10.7284/115581
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise FK140613 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5517/ccdc.csd.cc23rm2l
title: CCDC 1959109: Experimental Crystal Structure Determination

description: Related Article: Yanju Luo, Zhenguo Pang, Chuan Li, Kuan Chen, Xujun Zheng, Yan Huang, Zhiyun Lu|2020|J.Mater.Chem.C|8|11603|doi:10.1039/D0TC00738B
DOI: 10.7284/115733
title: Expendable Probe data collected during research cruise FK140613 using a Turo Quoll instrument system onboard the platform RV Falkor

description: Original (unprocessed) data collected during a Field_expedition