cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.bsug5x
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudoyersinia paui"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002587-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.18547024
title: Nanobody-based ONE imaging dataset for automated Parkinson's disease analysis based on cerebrospinal fluid samples

description: ONE microscopy relies on specific epitope recognition, to determine the presence of specific proteins within samples. It has sufficient resolution to then reveal the structural features of the respective protein assemblies.

To test this, we sought to address a pathology-relevant imaging challenge, focusing on Parkinson disease PD, a neurodegenerative disease characterized by the accumulation of aggregates composed of several proteins, of which α-synuclein (ASYN) is the most prominent. In the cell, ASYN can exist as a monomer or can assemble into species of different sizes, including soluble oligomers and fibrils. 

Importantly, ASYN-containing aggregates are present in the cerebrospinal fluid (CSF) and serum of both persons with PD and controls. Thus, simply identifying aggregates is not useful for diagnostics; being able to reveal the toxic ones, those present specifically in persons with PD, would be much more valuable. 

We analyzed ASYN assemblies in the fluid samples of persons with PD versus controls, labeling ASYN using a previously published nanobody (as in our previous work, Shaib et al., Nat Biotech, 2025, https://www.nature.com/articles/s41587-024-02431-9). Different types of ASYN assemblies could be detected, with different frequencies in different patients.

The attached data represent anonymized analyses of fluid samples, from 8 patients. Their identities and phenotypes are masked, to ensure that a long-term double-blind analysis will be performed correctly. Images were captured using a Leica STED and confocal microscope, in ONE microscopy, as described in the publication named above. 

Each folder contains data from one patient, including an automatically-derived file, termed “all_particles.tif”. The images are then separated into different categories of morphology, which are saved in different folders, including:



Annular: circular objects, of variable diameter

Large: structures that are beyond the oligomer size, and approach fibril size

Multi-single: structures composed of multiple oligomer-like objects

Oligo: simple oligomeric structures, with variable shape

Small oligo: small objects, corresponding to dimers or tetramers of ASYN

Other: all other types of arrangements, typically larger in size than oligomers, but smaller than fibrils


The number of files in each folder indicates the frequency of the different types of oligomers for the respective patients. These data are currently being used to optimize a discrimination procedure for PD.
DOI: 10.15468/dl.94zjvq
title: Occurrence Download

description: A dataset containing 1684 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Geniostoma rupestre",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 1684 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002588-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnvcmc
title: Occurrence Download

description: A dataset containing 14816 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geronticus eremita"
 ]
}

 The dataset includes 14816 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002589-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c4meq7
title: Occurrence Download

description: A dataset containing 243 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sporolithon durum"
 ]
}

 The dataset includes 243 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002591-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nbkjn8
title: Occurrence Download

description: A dataset containing 58706 records in GBIF matching the query:

 SELECT gbifid, datasetkey, specieskey, kingdom, phylum, class, "order", family, genus, species, scientificname, decimallatitude, decimallongitude, eventdate, institutioncode, "year" AS obs_year, basisofrecord, coordinateuncertaintyinmeters, issue
 FROM occurrence
 WHERE
 decimallatitude IS NOT NULL
 AND decimallongitude IS NOT NULL
 AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE')
 AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID')
 AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH')
 AND "year" &gt;= 2015
 AND "year" &lt;= 2026
 AND coordinateuncertaintyinmeters IS NOT NULL
 AND coordinateuncertaintyinmeters &gt; 0
 AND coordinateuncertaintyinmeters &lt;= 200.0
 AND decimallatitude &gt;= 41.89415215079384
 AND decimallatitude &lt;= 46.479780028101516
 AND decimallongitude &gt;= 119.88149504725064
 AND decimallongitude &lt;= 132.18235992772037
 AND GBIF_Within('POLYGON ((132.182360 41.894152, 132.182360 46.479780, 119.881495 46.479780, 119.881495 41.894152, 132.182360 41.894152))', decimallatitude, decimallongitude) = TRUE
 

 The dataset's 58706 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002583-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2yf2j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ciconia abdimii, Anas sparsa, Crex egregia, Anhinga rufa, Podica senegalensis, Actophilornis africanus, Bostrychia olivacea, Anastomus lamelligerus, Haematopus moquini, Nettapus auritus, Threskiornis aethiopicus, Rynchops flavirostris, Gallinago nigripennis, Platalea alba, Rallus caerulescens, Agamia agami, Tachybaptus rufolavatus, Porphyrio alleni, Recurvirostra americana, Botaurus lentiginosus, Anas rubripes, Fulica americana, Phoenicopterus ruber, Pluvialis dominica, Haematopus palliatus, Melanitta deglandi, Mareca americana, Scolopax minor, Anas marecula, Rallina canningi, Recurvirostra andina, Chloephaga melanoptera, Larus serranus, Vanellus resplendens, Gallinago jamesoni, Anas andium, Anhinga anhinga, Sterna vittata, Gavia arctica, Sterna paradisaea, Mundia elpenor, Porzana albicollis, Chloephaga poliocephala, Limnodromus semipalmatus, Anastomus oscitans, Podilymbus gigas, Mergus australis, Anas aucklandica, Tachybaptus novaehollandiae, Spatula rhynchotis, Porzana fluminea, Anhinga novaehollandiae, Pelecanus conspicillatus, Stiltia isabella, Tadorna tadornoides, Chenonetta jubata, Porphyrio flavirostris, Sibirionetta formosa, Zapornia pusilla, Calidris bairdii, Zapornia paykullii, Vanellus tricolor, Cladorhynchus leucocephalus, Larus belcheri, Gymnocrex plumbeiventris, Phimosus infuscatus, Tigrisoma mexicanum, Anser indicus, Branta leucopsis, Hypotaenidia torquata, Bucephala islandica, Limosa lapponica, Hypotaenidia poeciloptera, Esacus magnirostris, Anser fabalis, Ixobrychus flavicollis, Zapornia flavirostra, Egretta ardesiaca, Anous minutus, Haematopus bachmani, Melanitta americana, Rynchops niger, Ciconia nigra, Cygnus atratus, Chlidonias niger, Arenaria melanocephala, Ixobrychus dubius, Porzana fasciata, Dendrocygna autumnalis, Larus bulleri, Nycticorax nycticorax, Phalacrocorax fuscescens, Theristicus melanopis, Elseyornis melanops, Heteronetta atricapilla, Larus ridibundus)",
 "Country is United States of America",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "HasCoordinate is true",
 "DatasetName ~eBird"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002592-260208012135463/datasets/export for details.
DOI: 10.15468/cdm3ny
title: Three new species of the genus Megalothorax (Collembola: Neelidae) from France

description: This dataset contains the digitized treatments in Plazi based on the original journal article Panina, Ksenia, Bedos, Anne, Deharveng, Louis, Schneider, Clément (2026): Three new species of the genus Megalothorax (Collembola: Neelidae) from France. European Journal of Taxonomy 1034: 162-180, DOI: 10.5852/ejt.2026.1034.3153, URL: https://europeanjournaloftaxonomy.eu/index.php/ejt/article/download/3153/14041Abstract. Three new species of Megalothorax are described from France. Megalothorax calvignacensis sp. nov. was discovered in the Lot department and is characterized by a dense grey pigmentation unusual in minimus -group. Megalothorax cellarincola sp. nov. was discovered in several cellars in the ancient city center of Clermont-Ferrand. Megalothorax poinsotae sp. nov. is the first apparent littoral species of the genus and is characterized by strong lanceolate chaetae on the back of the head, and some thickened to lanceolate chaetae dorsally on the trunk. For each species, we provide a detailed morphological description and a molecular phylogenetic placement within the genus Megalothorax, based on the near complete nuclear rDNA operon. We inserted the species in the open key of the Megalothorax of the world (Schneider et al. 2023; last updated by Panina et al. 2025). The molecular analysis allowed to place M. cellarincola and M. poinsotae among the incertus -group sensu Schneider & D’Haese (2013). Megalothorax calvignacensis is found to belong to the minimus -group.
DOI: 10.15468/veahzb
title: CO1 Amplicon Sequence Variants of bulk arthropod samples (mild lysis) collected with Malaise traps from the Insect Biome Atlas project in Sweden

description: Amplicon Sequence Variants of 418bp of CO1 from mild lysed arthropod community samples collected with Malaise traps from the Insect Biome Atlas project in Sweden, as described in the IBA data paper.This dataset was published via the SBDI ASV portal, and has been updated from 'Metadata only' to 'Occurrence' type.Occurrence data were compiled from the following IBA Figshare items:Processed ASV data from the Insect Biome Atlas Project v3:cleaned_noise_filtered_cluster_taxonomy_SE.tsv.gzspikeins_tax_SE.tsv.gzAmplicon sequence variants from the Insect Biome Atlas project v6:co1_asv_counts_se.tsv.gzco1_asv_seqs_se.fasta.gzThe following samples were excluded from this resource due to sequencing failure: P23412_1633, P23412_1638, P23412_1641, P23412_1647; or lack of non-zero counts for annotated ASVs: P20863_1580, P23412_1318, P25061_1224, P25061_1440, P25061_1463, P25061_1711, P25061_1734, P25259_1134, P25259_1250.
DOI: 10.13140/rg.2.2.33156.18568
title: Cara Bagaimana Beretika dan Berbudaya di Dunia Digital Rizal Hanafiah 250511060
DOI: 10.15468/dl.bftwkq
title: Occurrence Download

description: A dataset containing 127 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lasianthus chrysoneurus",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 }
 ]
}

 The dataset includes 127 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002593-260208012135463/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34810/data2991
title: Replication Data for: Mid-infrared chirality and chiral thermal emission from twisted α-MoO3

description: Chirality in the mid-infrared spectral range plays a crucial role across physical, chemical, and biological sciences, yet sources of chiral infrared light are currently difficult to obtain. Their development, using principles from the mature field of metamaterials, requires complex three-dimensional architectures that call for high-resolution lithography. Here, we leverage the natural optical anisotropy found in several van der Waals crystals, for example α-MoO3, to demonstrate experimentally that its twisted bilayers break inversion-rotation symmetry and are thereby intrinsically chiral. Via direct thermal emission measurements of microscopic twisted bilayers, we demonstrate that these heterostructures generate chiral light through incandescence. Twisted configurations of van der Waals materials do not require any lithography and offer a platform for large-scale chiral filters and thermal sources beyond conventional meta-architectures.
DOI: 10.23729/fd-b02b6a4a-852d-35e8-9d15-be4ede6c3c58
title: 1s magnetic field variation from Sodankylä geomagnetic observatory (SOD) during Kannuslehto VLF campaigns 2008-2024

description: This data set is 1s magnetic field variation generated from the 2Hz samples of primary vector magnetometer of Sodankylä Geomagnetic Observatory (IAGA-code SOD). The resampling is done in MagPy2.0.0 software from the 500ms samples in IAGA-2002 format. The data includes X, Y and Z-components without baseline control.

The data set spans over 2008–2024 Kannuslehto VLF campaigns including only periods when the VLF measurements were available and geomagnetic activity was enhanced (gradients over 200nT/min). The days immediately before and after each geomagnetically active period is included covering together 320 days.

The dataset of 2008-2024 is used in manuscript Drastichová et al: " Geomagnetically Induced Currents on Power Line Harmonic Radiation Observed at the Kannuslehto Ground-Based Station" submitted to JGR: Space Physics.
DOI: 10.15468/dl.y7qcgj
title: Occurrence Download

description: A dataset containing 414075 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Rajiformes"
 ]
}

 The dataset includes 414075 records from 514 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0266563-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scnnwy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
(Query is too complex. Can be viewed on the landing page)

 The dataset includes 0 records from 9635 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003128-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.chumx2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.20_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Siparuna Aubl."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006796-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcchyj
title: Occurrence Download

description: A dataset containing 483 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.19_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Siparuna Aubl."
 ]
}

 The dataset includes 483 records from 64 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006795-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwwxh2
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Brachionus plicatilis",
 "Country is Mexico",
 "HasCoordinate is true"
 ]
}

 The dataset includes 18 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008375-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uxw7q
title: Occurrence Download

description: A dataset containing 3498 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Dipsosaurus dorsalis (Baird & Girard, 1852)"
 ]
}

 The dataset includes 3498 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0282318-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q78bet
title: Occurrence Download

description: A dataset containing 252225 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "Geometry POLYGON((-31.5 27.5,31.75 27.5,31.75 71.25,-31.5 71.25,-31.5 27.5))",
 "HasCoordinate is true",
 "TaxonKey is Muridae",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 252225 records from 481 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046910-200221144449610/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.iqc6it
title: Occurrence Download

description: A dataset containing 27888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinopterygii",
 "HasCoordinate is TRUE",
 "Country is Ecuador"
 ]
}

 The dataset includes 27888 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003998-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hxnsb3
title: Occurrence Download

description: A dataset containing 11169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trogoniformes)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-98.4939397803269 15.6685480502909,-93.8674267707424 15.6685480502909,-93.8674267707424 18.6688417204128,-98.4939397803269 18.6688417204128,-98.4939397803269 15.6685480502909))"
 ]
}

 The dataset includes 11169 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035938-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayw8em
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Sclerolobium beaurepairei Harms",
 "TaxonKey is Tachigali beaurepairei (Harms) L.F.Gomes da Silva & H.C.Lima"
 ]
}

 The dataset includes 56 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0301739-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zfrrfb
title: Occurrence Download

description: A dataset containing 50616 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The echinoderm collection (IE) of the Muséum national d'Histoire naturelle (MNHN - Paris)"
 ]
}

 The dataset includes 50616 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271383-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.llyk7z
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fungi",
 "DecimalLatitude is greater than 35.5691825106711",
 "DecimalLatitude is less than 36.1287550398072",
 "DecimalLongitude is greater than -106.68052765485",
 "DecimalLongitude is less than -105.932000443093"
 ]
}

 The dataset includes 450 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006308-180824113759888/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k63w6f
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acropora plantaginea (Lamarck, 1816)"
 ]
}

 The dataset includes 8 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0134995-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f3d2ya
title: Occurrence Download

description: A dataset containing 2352718 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON((-117.41089 32.5415,-115.68604 27.37793,-110.23682 22.32422,-108.44604 23.07129,-114.20288 32.76123,-117.41089 32.5415))"
 ]
}

 The dataset includes 2352718 records from 895 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0219328-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uq75xj
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paeonia szechuanica W.P.Fang"
 ]
}

 The dataset includes 15 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0309702-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.l0ernq
title: Occurrence Download

description: A dataset containing 936788 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Scrophulariaceae"
 ]
}

 The dataset includes 936788 records from 1387 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006308-190320150433242/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/58v-0zq-c9t
title: Cleidothaerus albidus (Lamarck, 1819)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/zkr-k6f-6kd
title: Acrilla acuminata (G. B. Sowerby II, 1844)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/63h-60t-cn2
title: Scutus antipodes Montfort, 1810

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w2e-7gy-8ce
title: Profundiconus tuberculosus (Tomlin, 1937)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ljd-taw-ewe
title: Priotrochus obscurus (W. Wood, 1828)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/m3y-ldz-4rn
title: Chicoreus cornucervi (Röding, 1798)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/84f-cj2-4s9
title: Amoria maculata (Swainson, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.