cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.28138775
title: Conformational dynamics of the membrane protein of MERS-CoV in comparison with SARS-CoV-2 in ERGIC complex

description: The present study explores the conformational dynamics of the membrane protein of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) within the Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) complex using an all-atomistic molecular dynamics simulation approach. Significant structural changes were observed in the N-terminal, C-terminal, transmembrane, and beta-sheet sandwich domains of the MERS-CoV membrane protein. This study also highlights the structural similarities between the MERS-CoV and the SARS-CoV-2 membrane proteins, particularly in how both exhibit a distinct kink in the transmembrane helix caused by aromatic residue-lipid interactions. A structural expansion below the transmembrane and above the beta-sheet sandwich domain within the dimer was observed in all the M-proteins. This site on the beta-sheet sandwich domains near the C-terminal end could serve as a potential drug-binding site. Notably, a stable helical structure was identified in the C-terminal domain of the MERS-CoV membrane protein, whereas a proper secondary structural conformation was not observed in the SARS-CoV-2 membrane protein. Further, the SARS-CoV-2 membrane protein exhibited stronger binding to the lipid bilayer than the MERS-CoV, indicating its greater structural stability within the ERGIC complex. The structural similarity between the membrane protein of MERS-CoV and SARS-CoV-2 suggests the feasibility of employing a common inhibitor against these beta-coronaviruses. Furthermore, this analysis enhances our understanding of the membrane protein’s interactions with proteins and lipids, paving the way for therapeutic developments against these viruses.
DOI: 10.6084/m9.figshare.28138775.v1
title: Conformational dynamics of the membrane protein of MERS-CoV in comparison with SARS-CoV-2 in ERGIC complex

description: The present study explores the conformational dynamics of the membrane protein of Middle East Respiratory Syndrome Coronavirus (MERS-CoV) within the Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) complex using an all-atomistic molecular dynamics simulation approach. Significant structural changes were observed in the N-terminal, C-terminal, transmembrane, and beta-sheet sandwich domains of the MERS-CoV membrane protein. This study also highlights the structural similarities between the MERS-CoV and the SARS-CoV-2 membrane proteins, particularly in how both exhibit a distinct kink in the transmembrane helix caused by aromatic residue-lipid interactions. A structural expansion below the transmembrane and above the beta-sheet sandwich domain within the dimer was observed in all the M-proteins. This site on the beta-sheet sandwich domains near the C-terminal end could serve as a potential drug-binding site. Notably, a stable helical structure was identified in the C-terminal domain of the MERS-CoV membrane protein, whereas a proper secondary structural conformation was not observed in the SARS-CoV-2 membrane protein. Further, the SARS-CoV-2 membrane protein exhibited stronger binding to the lipid bilayer than the MERS-CoV, indicating its greater structural stability within the ERGIC complex. The structural similarity between the membrane protein of MERS-CoV and SARS-CoV-2 suggests the feasibility of employing a common inhibitor against these beta-coronaviruses. Furthermore, this analysis enhances our understanding of the membrane protein’s interactions with proteins and lipids, paving the way for therapeutic developments against these viruses.
DOI: 10.15468/dl.7fsmta
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mus orangiae (Roberts, 1926)"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057016-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10844124
title: Supplemental Material: High serological barriers contribute to restricted Influenza-A-virus transmission between pigs and humans

description: Human-to-swine (reverse zoonotic) transmission of seasonal and pandemic human influenza A viruses (IAV) to pigs primarily replenishes the vast reservoir of genetically and antigenically heterogeneous swine (sw) IAV maintained in domestic pigs worldwide. Sporadic but regularly observed cases of pig-to-human (zoonotic) infections with swIAV tend to be discovered by chance, with children being affected disproportionately often.

Here, a total of 3070 porcine and 333 human nasal swab samples from 135 swine farms in Germany were investigated for IAV by real time RT-PCR and full genome sequencing. In addition, swIAV sequences generated in the frame of this study were analyzed to determine potential mutations for human MxA and BTN3A3 escape. 



01_Table S1: Summary of information of swine holdings and RT-qPCR results. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

02_Table S2: Summary of information about human samples and. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

03_Table S3: A. Comparison of relevant mutations in the genome of MWP/21, swine-MWP/21, and NRW/22 generated by Flusurver (http://flusurver.bii.a-star.edu.sg). 1 indicates the presence of mutation(s), 0 indicates the absence of those mutation(s). B. Visualization of the AA differences of affected segments of the zoonotic case MWP/21 and the corresponding sequence (sw-MWP/21) generated from pigs of the related herd. 

04_Table S4: Accession number (EPI_ISL) of sequences analyzed in the frame of this study. All sequences are available on GISAID EpiFLU.

05_Table S5: Amino acids on positions in the nucleoprotein (NP) sequence associated with MxA resistance and BTN3A3 resistance of selected swIAV NP sequences. "av) indicates genome segments phylogenetically associated with the avian-derived H1 (1C), "pdm" indicates those of the human pandemic A/H1N1 2009 lineage (1A). 

06_Figure S1:  Phylogenic tree of swIAV H1 HA gene of the clades 1A, 1B and 1C annotated by global H1-lineage nomenclature by Anderson et al. (2016). Swine derived swIAV sequences generated in the frame of this study are colored in red, zoonotic cases MWP/21 and NRW/22 are colored in green.  The reverse-zoonotic case is highlighted in violet with its closest related human sequence colored in green. 

07_Material and Methods: Description of material used and specification of applied methods in the frame of this study
DOI: 10.5281/zenodo.14601621
title: Supplemental Material: High serological barriers may contribute to restricted Influenza-A-virus transmission between pigs and humans

description: Human-to-swine (reverse zoonotic) transmission of seasonal and pandemic human influenza A viruses (IAV) to pigs primarily replenishes the vast reservoir of genetically and antigenically heterogeneous swine (sw) IAV maintained in domestic pigs worldwide. Sporadic but regularly observed cases of pig-to-human (zoonotic) infections with swIAV tend to be discovered by chance, with children being affected disproportionately often.

Here, a total of 3070 porcine and 333 human nasal swab samples from 135 swine farms in Germany were investigated for IAV by real time RT-PCR and full genome sequencing. In addition, swIAV sequences generated in the frame of this study were analyzed to determine potential mutations for human MxA and BTN3A3 escape. 



01_Table S1: Summary of information of swine holdings and RT-qPCR results. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

02_Table S2: Summary of information about human samples and. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

03_Table S3: A. Comparison of relevant mutations in the genome of MWP/21, swine-MWP/21, and NRW/22 generated by Flusurver (http://flusurver.bii.a-star.edu.sg). 1 indicates the presence of mutation(s), 0 indicates the absence of those mutation(s). B. Visualization of the AA differences of affected segments of the zoonotic case MWP/21 and the corresponding sequence (sw-MWP/21) generated from pigs of the related herd. 

04_Table S4: Accession number (EPI_ISL) of sequences analyzed in the frame of this study. All sequences are available on GISAID EpiFLU.

05_Table S5: Amino acids on positions in the nucleoprotein (NP) sequence associated with MxA resistance and BTN3A3 resistance of selected swIAV NP sequences. "av) indicates genome segments phylogenetically associated with the avian-derived H1 (1C), "pdm" indicates those of the human pandemic A/H1N1 2009 lineage (1A). 

06_Figure S1:  Phylogenic tree of swIAV H1 HA gene of the clades 1A, 1B and 1C annotated by global H1-lineage nomenclature by Anderson et al. (2016). Swine derived swIAV sequences generated in the frame of this study are colored in red, zoonotic cases MWP/21 and NRW/22 are colored in green.  The reverse-zoonotic case is highlighted in violet with its closest related human sequence colored in green. 

07_Material and Methods: Description of material used and specification of applied methods in the frame of this study
DOI: 10.5281/zenodo.10844123
title: Supplemental Material: High serological barriers may contribute to restricted Influenza-A-virus transmission between pigs and humans

description: Human-to-swine (reverse zoonotic) transmission of seasonal and pandemic human influenza A viruses (IAV) to pigs primarily replenishes the vast reservoir of genetically and antigenically heterogeneous swine (sw) IAV maintained in domestic pigs worldwide. Sporadic but regularly observed cases of pig-to-human (zoonotic) infections with swIAV tend to be discovered by chance, with children being affected disproportionately often.

Here, a total of 3070 porcine and 333 human nasal swab samples from 135 swine farms in Germany were investigated for IAV by real time RT-PCR and full genome sequencing. In addition, swIAV sequences generated in the frame of this study were analyzed to determine potential mutations for human MxA and BTN3A3 escape. 



01_Table S1: Summary of information of swine holdings and RT-qPCR results. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

02_Table S2: Summary of information about human samples and. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

03_Table S3: A. Comparison of relevant mutations in the genome of MWP/21, swine-MWP/21, and NRW/22 generated by Flusurver (http://flusurver.bii.a-star.edu.sg). 1 indicates the presence of mutation(s), 0 indicates the absence of those mutation(s). B. Visualization of the AA differences of affected segments of the zoonotic case MWP/21 and the corresponding sequence (sw-MWP/21) generated from pigs of the related herd. 

04_Table S4: Accession number (EPI_ISL) of sequences analyzed in the frame of this study. All sequences are available on GISAID EpiFLU.

05_Table S5: Amino acids on positions in the nucleoprotein (NP) sequence associated with MxA resistance and BTN3A3 resistance of selected swIAV NP sequences. "av) indicates genome segments phylogenetically associated with the avian-derived H1 (1C), "pdm" indicates those of the human pandemic A/H1N1 2009 lineage (1A). 

06_Figure S1:  Phylogenic tree of swIAV H1 HA gene of the clades 1A, 1B and 1C annotated by global H1-lineage nomenclature by Anderson et al. (2016). Swine derived swIAV sequences generated in the frame of this study are colored in red, zoonotic cases MWP/21 and NRW/22 are colored in green.  The reverse-zoonotic case is highlighted in violet with its closest related human sequence colored in green. 

07_Material and Methods: Description of material used and specification of applied methods in the frame of this study.

08_Questinonaire human participants: Questionaire used in the frame of this study.

09_Questinonaire swine farms: Questionaire used in the frame of this study.
DOI: 10.5281/zenodo.14601669
title: Supplemental Material: High serological barriers may contribute to restricted Influenza-A-virus transmission between pigs and humans

description: Human-to-swine (reverse zoonotic) transmission of seasonal and pandemic human influenza A viruses (IAV) to pigs primarily replenishes the vast reservoir of genetically and antigenically heterogeneous swine (sw) IAV maintained in domestic pigs worldwide. Sporadic but regularly observed cases of pig-to-human (zoonotic) infections with swIAV tend to be discovered by chance, with children being affected disproportionately often.

Here, a total of 3070 porcine and 333 human nasal swab samples from 135 swine farms in Germany were investigated for IAV by real time RT-PCR and full genome sequencing. In addition, swIAV sequences generated in the frame of this study were analyzed to determine potential mutations for human MxA and BTN3A3 escape. 



01_Table S1: Summary of information of swine holdings and RT-qPCR results. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

02_Table S2: Summary of information about human samples and. 1 indicates applicable; 0 indicates not applicable; n.d. indicates not determined.

03_Table S3: A. Comparison of relevant mutations in the genome of MWP/21, swine-MWP/21, and NRW/22 generated by Flusurver (http://flusurver.bii.a-star.edu.sg). 1 indicates the presence of mutation(s), 0 indicates the absence of those mutation(s). B. Visualization of the AA differences of affected segments of the zoonotic case MWP/21 and the corresponding sequence (sw-MWP/21) generated from pigs of the related herd. 

04_Table S4: Accession number (EPI_ISL) of sequences analyzed in the frame of this study. All sequences are available on GISAID EpiFLU.

05_Table S5: Amino acids on positions in the nucleoprotein (NP) sequence associated with MxA resistance and BTN3A3 resistance of selected swIAV NP sequences. "av) indicates genome segments phylogenetically associated with the avian-derived H1 (1C), "pdm" indicates those of the human pandemic A/H1N1 2009 lineage (1A). 

06_Figure S1:  Phylogenic tree of swIAV H1 HA gene of the clades 1A, 1B and 1C annotated by global H1-lineage nomenclature by Anderson et al. (2016). Swine derived swIAV sequences generated in the frame of this study are colored in red, zoonotic cases MWP/21 and NRW/22 are colored in green.  The reverse-zoonotic case is highlighted in violet with its closest related human sequence colored in green. 

07_Material and Methods: Description of material used and specification of applied methods in the frame of this study.

08_Questinonaire human participants: Questionaire used in the frame of this study.

09_Questinonaire swine farms: Questionaire used in the frame of this study.
DOI: 10.5281/zenodo.14601693
title: Supplementary Materials for "Localization of SDG 11, Sustainable Cities and Communities: Greater Manchester Case Study" - Appendix A: Data and Analysis Related to SDG 11.1.

description: This file contains Appendix A of the supplementary materials for the study 'Localization of SDG 11,' focusing on data and analysis related to SDG 11.1, including Tables A1 to A7 and Figure A1.
DOI: 10.5281/zenodo.14601694
title: Supplementary Materials for "Localization of SDG 11, Sustainable Cities and Communities: Greater Manchester Case Study" - Appendix A: Data and Analysis Related to SDG 11.1.

description: This file contains Appendix A of the supplementary materials for the study 'Localization of SDG 11,' focusing on data and analysis related to SDG 11.1, including Tables A1 to A7 and Figure A1.
DOI: 10.5281/zenodo.14601056
title: dataset related to NDCI-mGMM method

description: The final maize maps and validation samples data of each study site for the paper "NDCI-mGMM: A novel and automated model for dynamic maize mapping during the growing season".
DOI: 10.15468/dl.8325k5
title: Occurrence Download

description: A dataset containing 14544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brunei Darussalam",
 "TaxonKey is Animalia",
 "Year 2000-2025"
 ]
}

 The dataset includes 14544 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057018-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vejz7d
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pseudomys gouldii (Waterhouse, 1839)"
 ]
}

 The dataset includes 235 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057019-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14601703
title: ZAMONAVIY DAVRDA HUQUQIY DAVLAT VA FUQAROLIK JAMIYATINING RIVOJLANISHI

description: Ushbu maqolada zamonaviy davrda huquqiy davlat va fuqarolik jamiyatining oziga xos jihatlari,qarashlar,taliymotlar haqida so'z yuritiladi.Huquq sohasi vakillarining fikrlari keltirilib o'tiladi.
DOI: 10.5281/zenodo.14601704
title: ZAMONAVIY DAVRDA HUQUQIY DAVLAT VA FUQAROLIK JAMIYATINING RIVOJLANISHI

description: Ushbu maqolada zamonaviy davrda huquqiy davlat va fuqarolik jamiyatining oziga xos jihatlari,qarashlar,taliymotlar haqida so'z yuritiladi.Huquq sohasi vakillarining fikrlari keltirilib o'tiladi.
DOI: 10.15468/dl.3rpqmx
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leimacomys büttneri Matschie, 1893"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057020-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14601715
title: RUSSIAN LANGUAGE AND SPEECH CULTURE

description: The article explores the significance of the Russian language and speech culture as essential components of national identity, communication, and historical heritage. It discusses key aspects such as literacy, speech etiquette, and the influence of modern technology on language use. The article highlights the importance of maintaining a high level of linguistic proficiency for effective interaction in various social and professional contexts.
DOI: 10.5281/zenodo.14601716
title: RUSSIAN LANGUAGE AND SPEECH CULTURE

description: The article explores the significance of the Russian language and speech culture as essential components of national identity, communication, and historical heritage. It discusses key aspects such as literacy, speech etiquette, and the influence of modern technology on language use. The article highlights the importance of maintaining a high level of linguistic proficiency for effective interaction in various social and professional contexts.
DOI: 10.15468/dl.sd4g4g
title: Occurrence Download

description: A dataset containing 25797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sorex monticolus Merriam, 1890"
 ]
}

 The dataset includes 25797 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057022-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14601713
title: Supplementary Materials for "Localization of SDG 11, Sustainable Cities and Communities: Greater Manchester Case Study" - Appendix B: Data and Analysis Related to SDG 11.2.

description: This file contains Appendix B of the supplementary materials for the study 'Localization of SDG 11,' focusing on data and analysis related to SDG 11.2, including Tables B1 to B3.
DOI: 10.5281/zenodo.14601714
title: Supplementary Materials for "Localization of SDG 11, Sustainable Cities and Communities: Greater Manchester Case Study" - Appendix B: Data and Analysis Related to SDG 11.2.

description: This file contains Appendix B of the supplementary materials for the study 'Localization of SDG 11,' focusing on data and analysis related to SDG 11.2, including Tables B1 to B3.
DOI: 10.15468/dl.g4qfat
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ailuropoda melanoleuca (David, 1869)",
 "Country is China",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057024-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fdcc6w
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nesiotites hidalgo Bate, 1945"
 ]
}

 The dataset includes 29 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057026-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.et4p98
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ailuropoda melanoleuca (David, 1869)",
 "Country is China",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 37 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057027-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpkjce
title: Occurrence Download

description: A dataset containing 12197046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 12197046 records from 1960 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057021-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7r9hy4
title: Occurrence Download

description: A dataset containing 15942 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia decurrens Willd."
 ]
}

 The dataset includes 15942 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234607-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xcz6qp
title: Occurrence Download

description: A dataset containing 593172 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is CHN.30_1"
 ]
}

 The dataset includes 593172 records from 610 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0234600-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzqpmx
title: Occurrence Download

description: A dataset listing the 139372 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 139372 records were derived from 1754 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229304-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.