cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27300974
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 3-Volumes ID.csv
DOI: 10.6084/m9.figshare.27300974.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 3-Volumes ID.csv
DOI: 10.6084/m9.figshare.27300977
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 7-SPERM USE ID.csv
DOI: 10.6084/m9.figshare.27300977.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 7-SPERM USE ID.csv
DOI: 10.6084/m9.figshare.27300980
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: READ ME - data.txt
DOI: 10.6084/m9.figshare.27300980.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: READ ME - data.txt
DOI: 10.6084/m9.figshare.27300983
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 2-Volumes SPT.csv
DOI: 10.6084/m9.figshare.27300983.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 2-Volumes SPT.csv
DOI: 10.6084/m9.figshare.27300986.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 6-SPERM USE SPT.csv
DOI: 10.6084/m9.figshare.27300986
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 6-SPERM USE SPT.csv
DOI: 10.6084/m9.figshare.27300989
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 4-VIABILITY SPT.csv
DOI: 10.6084/m9.figshare.27300989.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 4-VIABILITY SPT.csv
DOI: 10.6084/m9.figshare.27300992
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 8-EGG NUMBER.csv
DOI: 10.6084/m9.figshare.27300992.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 8-EGG NUMBER.csv
DOI: 10.6084/m9.figshare.27300998
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 9-VIABILITY in Fishnet canals.csv
DOI: 10.6084/m9.figshare.27300998.v1
title: Supplementary Material from Gone but not forgotten: dynamics of sperm storage and potential ejaculate digestion in the black soldier fly Hermetia illucens

description: 9-VIABILITY in Fishnet canals.csv
DOI: 10.15468/dl.rukytx
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesiphon polymopphus Geitler, 1925"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002280-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10996360
title: Multi-antigen imaging data of skin tissue samples from melanoma and benign nevi

description: Data

Multi-antigen imaging data with 182 skin tissue samples:




Condition
PFS
Number of patients
Number of MELC images


Melanoma
PFS >=5
14
97


Melanoma
PFS < 5
8
15


Melanoma
NA
5
13


Benign nevi
-
12
57




Patients were treated at the University Hospital Erlangen. Each sample contains around 50 protein channels, each of resolution 512 X 512 pixels. The data were generated using multi-epitope ligand cartography (MELC) (https://doi.org/10.1038/nbt1250, https://doi.org/10.1007/3-540-36459-5_8).

Metadata

For each MELC image, the table contains the corresponding section and patient ID, sex, age, and which group (melanoma or nevus) it belongs to. For most of the melanoma samples, the data contains the information, whether the patient had progression free survival (PFS) of 5 years, the tumor thickness, whether the tumor is ulcerated and its coarse location (0: thoraric, 1: abdominal, 2: back, 3: arm, 4: leg) and side (right: -1, left: 1). Furthermore, we annotate if we could produce a high-quality segmentation result.

Model weights

We provide the pre-trained model as well as the fine-tuned models. Please be aware that we initalize the model before pre-training with the weights provided here https://github.com/ozanciga/self-supervised-histopathology/releases/tag/tenpercent (Ciga, O., Xu, T., and Martel, A. L. (2022). Self supervised contrastive learning for digital histopathology. Machine Learning with Applications 7, 100198).

Anndata file

We provide an anndata file with cell-level protein abundance and assigned cell types.
DOI: 10.5281/zenodo.10996361
title: Multi-antigen imaging data of skin tissue samples from melanoma and benign nevi

description: Data

Multi-antigen imaging data with 182 skin tissue samples:




Condition
PFS
Number of patients
Number of MELC images


Melanoma
PFS >=5
14
97


Melanoma
PFS < 5
8
15


Melanoma
NA
5
13


Benign nevi
-
12
57




Patients were treated at the University Hospital Erlangen. Each sample contains around 50 protein channels, each of resolution 512 X 512 pixels. The data were generated using multi-epitope ligand cartography (MELC) (https://doi.org/10.1038/nbt1250, https://doi.org/10.1007/3-540-36459-5_8).

Metadata

For each MELC image, the table contains the corresponding section and patient ID, sex, age, and which group (melanoma or nevus) it belongs to. For most of the melanoma samples, the data contains the information, whether the patient had progression free survival (PFS) of 5 years, the tumor thickness, whether the tumor is ulcerated and its coarse location (0: thoraric, 1: abdominal, 2: back, 3: arm, 4: leg) and side (right: -1, left: 1). Furthermore, we annotate if we could produce a high-quality segmentation result.

Model weights

We provide the pre-trained model as well as the fine-tuned models. Please be aware that we initalize the model before pre-training with the weights provided here https://github.com/ozanciga/self-supervised-histopathology/releases/tag/tenpercent (Ciga, O., Xu, T., and Martel, A. L. (2022). Self supervised contrastive learning for digital histopathology. Machine Learning with Applications 7, 100198).

Anndata file

We provide an anndata file with cell-level protein abundance and assigned cell types.
DOI: 10.15468/dl.ev59eh
title: Occurrence Download

description: A dataset containing 7064657 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Global soil organisms"
 ]
}

 The dataset includes 7064657 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002268-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysqtkr
title: Occurrence Download

description: A dataset containing 112394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material citation, Machine Observation, Occurrence evidence)",
 "Country is Türkiye",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 112394 records from 366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002248-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czvrjk
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesiphon polymorphus Geitler"
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002281-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11126965
title: Data for "Topological grain boundary segregation transitions"

description: This repository contains the raw data of the STEM imaging, EDS and EELS0 and the data corresponding to the simulations and theoretical calculations performed in the following paper: "Topological grain boundary segregation transitions".
DOI: 10.15468/dl.3t7pp5
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Sphaerocarpos europaeus Lorb."
 ]
}

 The dataset includes 18 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002282-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.remjvn
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesiphon prescottii Kullberg"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002284-241024112534372/datasets/export for details.
DOI: 10.15468/dl.sdpp54
title: Occurrence Download

description: A dataset containing 23608 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arctia villica Linnaeus, 1758"
 ]
}

 The dataset includes 23608 records from 612 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002283-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.urt99x
title: Occurrence Download

description: A dataset containing 435 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chamaesiphon rostafinskii Hansg."
 ]
}

 The dataset includes 435 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002287-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.36tdfs
title: Occurrence Download

description: A dataset containing 32 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crepis frigida (Boiss. & Balansa) Babc."
 ]
}

 The dataset includes 32 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002288-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9jq9by
title: Occurrence Download

description: A dataset containing 9304 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bombax albidum Gagnep., Bombax anceps Pierre, Bombax blancoanum A.Robyns, Bombax buonopozense Beauverd, Bombax ceiba L., Bombax costatum Pellegr. & Vuillet, Bombax insigne Wall.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Specimen, Material citation, Material sample)"
 ]
 }
 }
 ]
}

 The dataset includes 9304 records from 121 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002289-241024112534372/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gd6ccf
title: Occurrence Download

description: A dataset containing 35 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-73.70287 -2.38565,-57.81306 -2.38565,-57.81306 7.30426,-73.70287 7.30426,-73.70287 -2.38565))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "InstitutionCode is instituto nacional de pesquisas da amazônia (inpa)",
 "InstitutionCode is aum",
 "InstitutionCode is fmnh",
 "InstitutionCode is inciva",
 "InstitutionCode is rom"
 ]
 },
 "TaxonKey is Dicrossus filamentosus (Ladiges, 1958)"
 ]
}

 The dataset includes 35 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070886-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xnpc86
title: Occurrence Download

description: A dataset containing 2229 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Strongylopus grayii (Smith, 1849)"
 ]
}

 The dataset includes 2229 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0435621-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bn4f86
title: Occurrence Download

description: A dataset containing 4689973 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 4689973 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022197-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g5hy42
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((30.91218 -15.52623, 31.15981 -15.33576, 31.465 -14.79793, 31.30854 -14.55609, 30.91533 -14.57298, 30.659 -15.16898, 30.91218 -15.52623)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176670-210914110416597/datasets/export for details.
DOI: 10.15468/dl.a739b6
title: Occurrence Download

description: A dataset containing 112 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Distribution of small cetaceans in the nearshore waters of Sarawak, East Malaysia"
 ]
}

 The dataset includes 112 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016091-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49h3hs
title: Occurrence Download

description: A dataset containing 315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Australia)",
 "BasisOfRecord is one of (Specimen)",
 "Year is greater than or equal to 1900",
 "TaxonKey is Nassella trichotoma (Nees) Hack. & Arechav.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 315 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0420604-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wm4p3n
title: Occurrence Download

description: A dataset containing 157143 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "GadmGid is one of (PAK, IND, NPL, AFG, BGD, BTN, LKA)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 157143 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009196-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s8zrw4
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passiflora foetida Vell."
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176673-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djbqv3
title: Occurrence Download

description: A dataset containing 4023 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-124.79564 41.91768,-121.66544 32.42712,-114.75964 32.48158,-114.17878 33.64447,-120.47145 38.7956,-120.92323 41.91768,-124.79564 41.91768))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eupeodes volucris Osten Sacken, 1877"
 ]
}

 The dataset includes 4023 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013526-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fht94p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((34.44042 16.0176, 34.72981 16.28012, 34.386 16.402, 33.91193 16.39152, 33.68175 15.77589, 33.62328 15.28933, 33.81743 14.87785, 34.068 15.204, 34.44042 16.0176)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176671-210914110416597/datasets/export for details.
DOI: 10.15468/dl.42zfcy
title: Occurrence Download

description: A dataset containing 261417 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vulpes vulpes (Linnaeus, 1758)",
 "Year 1979-2013"
 ]
}

 The dataset includes 261417 records from 822 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009185-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pgpx9j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnoliopsida, Liliopsida)",
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "Geometry MULTIPOLYGON (((81.57093 64.69322, 83.717 64.33, 84.24418 64.46481, 84.03986 64.82111, 82.49464 64.78703, 81.57093 64.69322)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0176672-210914110416597/datasets/export for details.
DOI: 10.15468/dl.mu6u36
title: Occurrence Download

description: A dataset containing 1342 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycaon pictus (Temminck, 1820)"
 ]
}

 The dataset includes 1342 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002462-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nzc653
title: Occurrence Download

description: A dataset containing 208 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (cauca)",
 "TaxonKey is one of (Tapirus pinchaque (Roulin, 1829))"
 ]
 }
 ]
}

 The dataset includes 208 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004494-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eztns4
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Cleistogenes hackelii var. nakaii (Keng) Ohwi"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0267626-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w7yygz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Megacarpaea schugnanica B.Fedtsch."
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063671-231120084113126/datasets/export for details.
DOI: 10.15468/dl.affka2
title: Occurrence Download

description: A dataset listing the 163783 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-180 10,180 10,180 15,-180 15,-180 10))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Issue is one of (Country derived from coordinates, Continent derived from coordinates)",
 "OccurrenceStatus is Present",
 "Year 2002-2023"
 ]
}

 The dataset's 163783 records were derived from 1938 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009186-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.petxex
title: Occurrence Download

description: A dataset containing 82656 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muhlenbergia Schreb."
 ]
}

 The dataset includes 82656 records from 396 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003453-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fbybus
title: Occurrence Download

description: A dataset containing 681 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Matthiola odoratissima (Pall. ex M.Bieb.) W.T.Aiton"
 ]
}

 The dataset includes 681 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034951-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.