cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/kmfj4r7ywj
title: Parallel implementation of inverse adding-doubling and Monte Carlo multi-layered programs for high performance computing systems with shared and distributed memory

description: Abstract Parallel implementation of two numerical tools popular in optical studies of biological materials-Inverse Adding-Doubling (IAD) program and Monte Carlo Multi-Layered (MCML) program-was developed and tested in this study. The implementation was based on Message Passing Interface (MPI) and standard C-language. Parallel versions of IAD and MCML programs were compared to their sequential counterparts in validation and performance tests. Additionally, the portability of the programs was tested usi... Title of program: MCMLMPI, IADMPI Catalogue Id: AEWF_v1_0 Nature of problem Photon transport in multilayered semi-transparent material, estimation of optical properties (IADMPI) and optical response (MCMLMPI) of multilayered material samples. Versions of this program held in the CPC repository in Mendeley Data AEWF_v1_0; MCMLMPI, IADMPI; 10.1016/j.cpc.2015.02.029 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018)
DOI: 10.26180/13139318.v1
title: Lipidomic analysis of liver, plasma and adipose tissue in obesity and NAFLD

description: Lipidomic analysis of liver, plasma, visceral adipose tissue and subcutaneous adipose tissue in participants with obesity.
DOI: 10.6084/m9.figshare.16658449.v1
title: Gencode38 Blood PAXgene RNAseq

description: Mapped reads from Gencode38 using Salmon quasi aligner for various bioprojects of paired end blood PAXgene tube RNAseq.
DOI: 10.6084/m9.figshare.24086160.v1
title: Line listed data for dengue and severe dengue notified cases in Bello, Medellin and Itagui, 2008-2017

description: This dataset holds line listed records of dengue and severe dengue case notifications to the Colombian disease surveillance system (SIVIGILA) in 2008-2017 for the thee Wolbachia-treated cities of Bello, Medellin and Itagui. It underlies the analysis of the age and sex distribution of dengue cases in those cities, and the descriptive analysis of baseline dengue burden prior to Wolbachia implementation, reported in the paper by Velez et al "Reduced dengue incidence following city-wide wMel Wolbachia mosquito releases throughout three Colombian cities: interrupted time series analysis and a prospective case-control study" published in PLoS Neglected Tropical Diseases in 2023.Dengue case data source: https://portalsivigila.ins.gov.co/Paginas/Vigilancia-Rutinaria.aspx
DOI: 10.17632/2drrbzr87t
title: Trend of publications on super-resolution imaging

description: These data, extracted from Scopus and PubMed, shows the trend of publications on the field of super-resolution imaging.
DOI: 10.17632/523d6dxz4n
title: BdSLW-11: A Bangladeshi Sign Language Words Dataset for Recognizing 11 daily useful BdSL Words

description:  BdSLW - 11 stands for Bangladeshi Sign Language Words dataset for 11 sign words. This dataset is a collection of 1105 images of 11 classes or categories.  Each class of the dataset contains more than 77 images. The classes are labeled as the 11 BdSL daily useful common Sign Words. The classes are 'Bad', 'Beautiful',' Friend', 'Good',' House',' Me',' My', 'Request',' Skin',' Urine' and 'You'. The images are selected and processed focusing on only hand gestures, clear background, and brightness.  The size of the images is 224 x 224, and the format of the images is RGB with high resolution. Images are taken from volunteer signers with full permission by smartphones.  This dataset is greatly helpful for the Deaf and Dumb community and also researchers.

Note that the third version is updated as the 11 category-wise. Now researchers can download the full dataset as one folder as well as 11 category data separately, and they can use this data in their research easily.

* Fourth version is the replacement of some images with better quality.
DOI: 10.17632/mymcnbhkpm
title: Data for: Deep-water formation variability in the north-western Mediterranean Sea during the last 2500 yr: A proxy validation with present-day data

description: Deep-water formation variability reconstructed in the central-western Mediterranean Sea. The UP10 parameter (grain-size fraction &gt; 10 micrometers) has been studied in two marine sediment cores recovered in the north of Minorca Island.
DOI: 10.6084/m9.figshare.22182145.v1
title: Supplementary Material for: Cytogenetic analysis of the fungus-farming ant Cyphomyrmex rimosus (Spinola, 1851) (Formicidae: Myrmicinae: Attini) highlights karyotypic variation

description: The fungus-farming ant genus Cyphomyrmex (subtribe Attina, clade Neoattina) comprises 23 described species that are widely distributed throughout the Neotropics. Species within Cyphomyrmex have taxonomic issues such as Cyphomyrmex rimosus (Spinola, 1851) which is likely a species complex. Cytogenetics is a useful tool for evolutionary studies and understanding species with dubious taxonomy. In this study, we characterized the karyotype of C. rimosus from Viçosa, Minas Gerais state, southeastern Brazil using classical and molecular cytogenetic techniques to enrich the chromosomal information about Cyphomyrmex. The karyotype of C. rimosus from the rainforest of southeastern Brazil (2n = 22, 18m + 4sm) notably contrasts with that previously described for this species in Panama (2n = 32). This intraspecific chromosomal variation suggests the existence of a species complex within this taxon according to the previous hypothesis derived from morphological analysis. We detected GC-rich heterochromatic regions in C. rimosus and using repetitive DNA probes showed that this heterochromatin shares repetitive sequences with other Neoattina species already studied, enhancing the importance of this specific genome region in the understanding of Attina evolution. Mapping of microsatellite (GA)15 on C. rimosus was restricted to the euchromatic regions of all chromosomes. The single intrachromosomal rDNA sites observed in C. rimosus follow the general genomic organization trend of ribosomal genes in Formicidae. Our study extends the data of chromosome mapping on Cyphomyrmex and reinforces the importance of cytogenetic studies in different localities to better understand taxonomic issues in widely distributed taxa such as C. rimosus.
DOI: 10.6084/m9.figshare.24031095.v1
title: <b>Implementation of cervical cancer prevention and screening across five tertiary hospitals in Nepal and its policy implications</b>

description: These are the datasets for the study titled <b>Implementation of cervical cancer prevention and screening across five tertiary hospitals in Nepal and its policy implications: a mixed-methods study</b>. The quantitative study comprised the health professionals and women attending gynecology outpatient clinics from the selected hospitals.
DOI: 10.6084/m9.figshare.24434596.v1
title: Elucidating the mechanisms of microbubble formation in intracardiac pulsed field ablation - COMSOL Model Files

description: Delivery of electrical energy for sensing or therapeutic purposes often involves electrochemical phenomena at the electrode-electrolyte solution interface. Release of gaseous bubbles that accompanies delivery of pulsed electric fields to tissues in applications such as electrochemotherapy of tumours and irreversible electroporation or pulsed field ablation in cardiac electrophysiology needs to be understood and characterized. We present an <i>in vitro </i>study using pulsed field delivery into saline, employing multiple different treatment protocols, two electrode geometries (pair of needles and a modified RF catheter), and two imaging systems to elucidate the complex relationship between the electrical treatment protocol, temperature changes at and around the electrodes, and gas release due to pulse delivery. Our primary objective was to identify the key parameters responsible for bubble formation and to highlight the importance of the treatment parameters and their interplay – ranging from the temperature to appropriate choice of electrode geometry, and, most importantly, to the choice of the treatment protocol. We found that bubbles originating from electrochemical reactions are more prevalent in monophasic pulsing protocols, whereas in high frequency biphasic pulsing protocols the bubbles are mainly caused by boiling of the medium. Degassing of liquid due to lower solubility of gasses at elevated temperatures does seems to play a role, though a minor one. We also observed that bubbles caused by boiling collapse very rapidly, whereas electrochemically produced bubbles or those produced through degassing appear to have longer lifetimes. Therefore, the treatment protocols most suited to minimizing gas release are biphasic trains of short (µs) pulses with a significant inter-pulse delay (i.e. low duty cycle) to prevent excessive heating. Moreover, electrodes must be designed to avoid high local current densities. Our findings have broad implications extending from lab-on-a-chip cell electroporation devices to intracorporeal pulsed field applications in the cardiovascular system, particularly pulsed field ablation procedures.
DOI: 10.17605/osf.io/zeshv
title: Context dependent response to familiar and unfamiliar handlers in the Tokay gecko

description: We investigated consistent between indivisual differences in tonic immobility (death feighning) in adult, male and female Tokay geckos (Gekko gecko) across four trials.
DOI: 10.17632/43bdssgc87
title: Data Set. Survey of 138 Conjunctival Tumors in the Dominican Republic

description: DATA SET for submission purposes. You can share, copy and modify this dataset so long as you give appropriate credit, provide a link to the CC BY license, and indicate if changes were made, but you may not do so in a way that suggests the rights holder has endorsed you or your use of the dataset. The data that support the findings of this study are available from the corresponding author, FP, upon reasonable request.
DOI: 10.17632/dn97v65krt
title: Table S1

description: Supplemental table 1 for manuscript titled 'ATLAS: A positive, high-yield review of patient symptoms most significantly associated with melanoma recurrence'
DOI: 10.17632/vp5bpm7w9r
title: Blockade of αvβ6 and αvβ8 integrins with a chromogranin A-derived peptide inhibits TGFβ activation in tumors and suppresses tumor growth

description: These files contain the raw images and dataset used to generate Figures 1A, 5 (panels B, C, and G), 6 (panels A, D, E and F), and S3A of the article titled “Blockade of αvβ6 and αvβ8 integrins with a chromogranin A-derived peptide inhibits TGFβ activation in tumors and suppresses tumor growth” by A.M. Gasparri, A. Pocaterra, B. Colombo, G. Taiè, C. Gnasso, A. Gori, F. Pozzi, A. Smith, F. Magni, A. Ugolini, M. Doglio, M.C. Bonini, A. Mondino, A. Corti, and C. Curnis, published in J Exp Clin Cancer Res 44, 88 (2025). https://doi.org/10.1186/s13046-025-03352-4

The research leading to these findings was funded by Associazione Italiana per la Ricerca sul Cancro (AIRC) under IG 2019 – ID. 23470 project – P.I. Angelo Corti; Fondazione AIRC 5 per Mille 2019 program (ID. 22737), P.I. MC Bonini, Group Leader A. Corti and A. Mondino; collectively supported by the national funding organizations under the framework of the ERA-NET TRANSCAN-3 initiative (ReachGlio project, ID: TRANSCAN2022-784-017 – Italian Ministry of Health ID: ERP-2022-23683648 to F. Curnis); and National Recovery and Resilience Plan (NRRP), M6/C2_CALL 2023 (project: POC-2023-12377318 to F. Curnis) funded by the European Union – NextGenerationEU.
DOI: 10.17632/ywsbbvtwjc
title: Data for: Efficiency and Productivity of Cancer Care in Europe

description: Methods, Quantity Index and time series data
DOI: 10.6084/m9.figshare.25665207.v1
title: EOTIPS DATA.xlsx

description: Occupational therapy (OT) is an effective evidence-based intervention that positively influences stroke patients’ independence recovery, leading to new opportunities for better quality of life outcomes.<b> </b>The objective of this research was to explore the effectiveness of an early OT intervention program (EOTIPS) in the process of hospital to home discharge after stroke.<b> </b>We conducted a prospective, randomized controlled clinical trial that included 60 adults who suffered a stroke and were discharged home. Participants assigned to the experimental group (n = 30) were included in EOTIPS and compared with a control group (n = 30). Evaluations assessed quality of life (Spanish Stroke and Aphasia Quality of Life Scale [SAQOL-39]), functional independence (Modified Rankin Scale [MRS], Barthel Index [BI] and Stroke Impact Scale-16 [SIS-16]), perceptual-cognitive skills (Montreal Cognitive Assessment [MoCA]), upper limb function (Fugl Meyer Assessment [FMA]), mobility (Berg Balance Scale [BBS] and Timed Up & Go [TUG]), communication skills (Communicative Activity Log [CAL]) and mood disorders (Beck Depression Inventory – II [BDI-II] and Hamilton Anxiety Scale [HAM-A]); they were completed within two weeks post-stroke and after three months follow-up. Statistical analysis included intent-to-treat analysis, considering all participants (dropouts as failures), and efficacy analysis, considering only end-of-treatment participants.
DOI: 10.6084/m9.figshare.3505142.v1
title: Herbs 160620.csv

description: Files “Herbs 160620.csv” and “Shrubs 160620.csv” contain
data on the herbaceous and woody, respectively, vascular plant community
composition in 2012 of plots in the portion of the Palmerton Zinc Superfund
Site (Palmerton, PA, USA) amended with different compost types and seed mixes
in 2003.  Detailed methods are described
in Dietterich and Casper (2016).  Column
headings are described below.

 

Date: date of sampling.

Plot: one-acre plot to which a single
combination of experimental treatments was applied.

Transect: transect, nested within plot, along
which sampling quadrats were established.

Quadrat: quadrat, nested within transect, in
which species identity and percent cover were assessed.  Quadrats were 1 m<sup>2</sup> squares for
herbaceous species measurements, and 100 m<sup>2</sup> circles for woody
species measurements.

Shape: shape of the plot.  R denotes 32 x 128 m rectangular plots, and S
denotes 64 x 64 m square plots.  

Herb.Shrub: Denotes whether a given quadrat was
used to assess herbaceous (“Herb”) or woody (“Shrub”) vegetation.

Seed: Seed mixture applied to the plot.  “C4,” “Annual,” and “Perennial” correspond to
“2003 Seed Mix” 1, 2, and 3, respectively, in Table 1 of Dietterich and Casper
(2016).  

Compost: Compost type applied to the plot.  “Lehigh” denotes Lehigh County compost,
“Duck” denotes duck manure, “Straw” denotes straw mulch, “Mushroom” denotes
mushroom compost, and “Sludge” denotes sewage sludge.

 

All other columns denote the percent cover of a given
species recorded in that quadrat. 
Species abbreviations are elaborated in Table S1 of Dietterich and
Casper (2016).
DOI: 10.17632/4hgyg8p7kg
title: Mukh-Biboron

description: Mukh-Biboron is a dataset containing Bangla textual descriptions of images of faces. This dataset has 40 appropriate Bangla Facial Attributes and their annotations for over 200,000 images. Mukh-Biboron also contains 10 diverse Bangla captions of more than 200,000 facial images. Mukh-Biboron is derived from the publicly available CelebA dataset.
DOI: 10.6084/m9.figshare.1328400.v1
title: Filling in the gaps

description: Species distributions are often poorly known and derived from spatially biased occurrence records. This lack of information is termed the Wallacean Shortfall. Two sources of error in our knowledge of species distributions are false absences (omission errors) and false presences (commission errors) . This uncertainty limits our process-based understanding of species distributions and is an obstacle to assessing the current status of species distributions, monitoring temporal trends and designing reserve networks. Here we employ a method which allows species occurrence records to be modelled at the spatial grain at which they were collected (Beale et al. 2014). Instead of coarsening fine-grain records, the relationship between recording intensity and detection probability is modelled to account for the spatial variation in recording intensity that is inherent in opportunistic data. We apply this method to the Brindled Green moth, a species whose distribution is widespread but under-recorded in the British Isles, with many gaps in the known distribution at grains &lt;100km2 grain.
DOI: 10.6084/m9.figshare.1444405.v1
title: Dataset for Mobile Phone Sensing Based Fall Detection

description: This is a labelled dataset of mobile phone integrated accelerometer and gyroscope sensor data, in which falls and activities of daily life (ADL) were simulated as realistically as possible by martial artists. 5 different mobile phone devices were used for the recordings:<br>Samsung Galaxy S4<br>Samsumg Galaxy S5 Mini<br>Sony Z3<br>Google Nexus 4<br>Google Nexus 5<br>Sampling Frequency: 5Hz, for both accelerometer and gyroscope sensors Simulation of falls and ADL<br>We recorded eight simulations, seven incorporating a fall and one simulation with ADL. The simulations were performed by five martial artists in parallel. Each simulation was repeated five times. The simulations were repeated with a second group of martial artists.<br>Each martial artist was equipped with a belt bag in which the mobile device was put into. Dataset Content<br>13 Tables<br>DEVICE_ALL_ACCELERATION ... acceleration data of all devices<br>DEVICE_ALL_ORIENTATION ... orientation data of all devices<br>DEVICE_{modelname}_ACCELERATION ... acceleration data of a single device<br>DEVICE_{modelname}_ORIENTATION ... orientation data of a single device<br>MANUAL_LABELS ... manually labelled activities Datatypes<br>Acceleration is stored as a three dimensional vector indicating acceleration along each device axis, not including gravity. All values have units of m/s^2. Addtionally, the total acceleration from the vector is stored. Formula: squared root of (x^2 + y^2 + z^2) Orientation is stored as three dimensional vector of angles azimuth, pitch and roll. All values are angles in degrees. Azimuth, angle between the magnetic north direction and the y-axis, around the z-axis (0 to 359). 0=North, 90=East, 180=South, 270=West<br>Pitch, rotation around x-axis (-180 to 180), with positive values when the z-axis moves toward the y-axis.<br>Roll, rotation around y-axis (-90 to 90), with positive values when the x-axis moves toward the z-axis.<br>Note: This definition is different from yaw, pitch and roll used in aviation where the X axis is along the long side of the plane (tail to nose). Timestamps are in milliseconds (unix epoch time). Stats<br>159300 acceleration records<br>159300 orientation records<br>492 labels<br>~ 6 six hours of fall simulations<br>~ 4 hours of ADL simulations ACKNOWLEDGEMENTS The Knowledge Technologies Institute is part of the Faculty of Computer Science and Biomedical Engineering at the Graz University of Technology. The Know-Center is funded within the Austrian COMET Program under the auspices of the Austrian Ministry of Transport, Innovation and Technology, the Austrian Ministry of Economics and Labor and by the State of Styria. COMET is managed by the Austrian Research Promotion Agency FFG. The DALIA project (AAL-2012-5-249) is co-financed under the Ambient Assisted Living Joint Programme of the European Commission (www.aal-europe.eu) and the National Funding Agencies of Austria, Belgium, Netherlands and Switzerland. The authors also wish to thank the martial artists of the Ninpo Bujutsu Club Graz, for simulating so many falls.
DOI: 10.6084/m9.figshare.29053541.v1
title: Stokes Parameter Maps for Figure 4 – Poincaré Beams from a Free Electron Laser

description: This dataset contains spatially resolved, normalized Stokes parameter maps (s1s_1s1​, s2s_2s2​, and s3s_3s3​) used to generate the polarization plots in Figure 4 of the publication:<br>"Poincaré Beams from a Free Electron Laser", submitted to <i>Nature Photonics</i> (2025).The data are provided in HDF5 format and represent fully processed values after background subtraction, alignment, and normalization. These arrays were used to compute the polarization ellipse distributions, the Poincaré sphere coverage, and the histograms shown in Figure 4.
DOI: 10.6084/m9.figshare.29145197.v1
title: Residual Energy Analysis in Virtual-to-Dark Energy Conversion

description: This simulation evaluates the residual quantum energy remaining after the transformation of virtual energy into stabilized dark energy. The governing relation is<br>Etotal=Edark+∑kΔEkresidualE_{\text{total}} = E_{\text{dark}} + \sum_k \Delta E^{\text{residual}}_kEtotal​=Edark​+∑k​ΔEkresidual​,<br>and the simulation plots the ratio ΔEresidual/Evirtual\Delta E_{\text{residual}} / E_{\text{virtual}}ΔEresidual​/Evirtual​ for various initial virtual energy values. Results demonstrate that the residual energy ratio remains nearly constant around 8×10−138 \times 10^{-13}8×10−13, indicating that the anti-time transformation process is highly efficient and conserves nearly all input energy. This supports the theoretical claim that no significant dissipation occurs during the transition from quantum fluctuations to dark energy states.
DOI: 10.17632/2dvppgjbxc
title: Data set on the indigenous flood control and management knowledge and its effectiveness in flood disaster risk reduction in Nigeria’s coastal communities

description: The data set used principal component analysis to measured and classified the 36 indigenous flood control and management techniques and their level of effectiveness in flood disaster risk reduction in Nigeria’s coastal communities into nine significant components. These are the indigenous flood control knowledge, the indigenous flood forecasting knowledge, indigenous technical knowledge, indigenous flood magnitude detection knowledge, and indigenous flood prevention knowledge . Others are indigenous safety knowledge, indigenous food security knowledge , indigenous flood emergency preparation knowledge and indigenous flood coping knowledge (3.583%).
DOI: 10.6084/m9.figshare.27131796.v1
title: Data files supporting the manuscript: <b>Nitisinone’s mosquitocidal properties hold promise for malaria control</b>

description: Created on 29 Sep 2024 - 16:28 by Lee HainesThe project describes a potential method for reducing the spread of diseases carried by insects, specifically mosquitoes that transmit malaria. The method involves using drugs that make the blood of animals or humans toxic to insects that feed on blood. The key point is that a specific enzyme called 4- hydroxyphenylpyruvate dioxygenase, HPPD, which is important for blood-feeding insects like mosquitoes, can be targeted. A drug called nitisinone, which is already approved by the FDA to treat rare human diseases linked to tyrosine metabolism, can inhibit this enzyme.We further characterise nitisinone's activity - when mosquitoes were fed human blood containing nitisinone, it killed both young and old mosquitoes, and those resistant to other insecticides. In side by side comparisons to another similar drug named ivermectin, nitisinone had a better killing profile for mosquitoes. Additionally, people with a rare genetic condition called alkaptonuria, who therapeutically ingest a low daily dose of nitisinone (2 mg/day), have blood that kills mosquitoes. This suggests that using nitisinone to inhibit this enzyme could be a new way to help control malaria.
DOI: 10.6084/m9.figshare.27939921.v1
title: Differential Gene Expression

description: Files related to differential gene expression analysis.