cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3987888
title: Processed data of "The dominant contribution of Southern Ocean heat uptake to time-evolving radiative feedback in CESM"

description: This repository contains processed data for a suite of “patches experiments” and the abrupt4×CO<sub>2 </sub>simulation in CESM-SOM.<strong> </strong>This repository supports a paper by Yuan-Jen Lin, Yen-Ting Hwang, Jian Lu, Fukai Liu, and Brian E. J. Rose, submitted to Geophysical Research Letters, August 2020. See README file for more information.
DOI: 10.5281/zenodo.3986210
title: Supporting data for the manuscript "metaFlye: scalable long-read metagenome assembly using repeat graphs"

description: Genome assemblies, simulated datasets and evaluations described in the manuscript "metaFlye: scalable long-read metagenome assembly using repeat graphs".
DOI: 10.5281/zenodo.3627417
title: Supporting data for the manuscript "metaFlye: scalable long-read metagenome assembly using repeat graphs"

description: Genome assemblies, simulated datasets and evaluations described in the manuscript "metaFlye: scalable long-read metagenome assembly using repeat graphs".
DOI: 10.5281/zenodo.3980635
title: CFHT MegaPrime/MegaCam u-band source catalogue of the AKARI North Ecliptic Pole Wide field

description: This is the CFHT MegaPrime/MegaCam u-band catalogue of the AKARI North Ecliptic Pole Wide field. The observations were performed by the CFHT MegaPrime/MegaCam with its u-band filter (u.MP9302; range 3041-4014 angstrom; effective wavelength at 3610 angstrom) covering a 3.6-square-degree area. Observation periods were 2015 May 22 to 26, and 2016 July 6 to 7. The limiting magnitude is 25.4 mag, while reaches 25.8 mag in a deeper 1-square-degree area. 351,635 sources have been detected. The details of the data reduction and quality are described in the paper: https://doi.org/10.1093/mnras/staa2459 (or https://arxiv.org/abs/2008.05224).
DOI: 10.5281/zenodo.3980634
title: CFHT MegaPrime/MegaCam u-band source catalogue of the AKARI North Ecliptic Pole Wide field

description: This is the CFHT MegaPrime/MegaCam u-band catalogue of the AKARI North Ecliptic Pole Wide field. The observations were performed by the CFHT MegaPrime/MegaCam with its u-band filter (u.MP9302; range 3041-4014 angstrom; effective wavelength at 3610 angstrom) covering a 3.6-square-degree area. Observation periods were 2015 May 22 to 26, and 2016 July 6 to 7. The limiting magnitude is 25.4 mag, while reaches 25.8 mag in a deeper 1-square-degree area. 351,635 sources have been detected. The details of the data reduction and quality are described in the paper: https://doi.org/10.1093/mnras/staa2459 (or https://arxiv.org/abs/2008.05224).
DOI: 10.25345/c53r01
title: MassIVE MSV000085986 - GNPS CCL IS MSConvert 20200821
title: Data from MSConvert of CCL1 under positive ionization mode.
DOI: 10.5517/ccdc.csd.cc250yx2
title: CCDC 1996924: Experimental Crystal Structure Determination

description: Related Article: Shao-Dan Wang, Lan-Xin Xie, Yu-Fei Zhao, Yan-Ning Wang|2020|Spectrochim.Acta,Part A|242|118750|doi:10.1016/j.saa.2020.118750
DOI: 10.25919/5f3f3f12892e5
title: Parkes observations for project P1032 semester 2020APRS_04

description: We propose timing observations of southern double neutron star (DNS) systems to obtain precise estimates of the component masses and thus increase the statistics of neutron star mass distribution. The improved sensitivity of the Ultra Wideband Low (UWL) receiver will provide a 3X increase in the precision of the time of arrivals (ToAs) of the pulses compared to the multibeam data. This has the potential to perform quick measurements of masses for a number of binary systems in the next 1-2 years. We will also use MeerKAT observations at crucial orbital phases to increase our chances of mass measurements. Increase in the number of measured NS masses has significant implications for understanding NS internal structure and for stellar and binary evolution physics.
DOI: 10.17632/9zwmjmwmcx.1
title: Data for: Explaining persistent incomplete mixing in multicomponent reactive transport with Eulerian stochastic model

description: Data for Figures 2 and 3
DOI: 10.25345/c5zx8j
title: MassIVE MSV000085987 - GNPS CCL IS lcms unifi Pos unknows 20200820
title: Analysis of CCL1 and CCL2 from unifi with no information of compounds.
DOI: 10.5517/ccdc.csd.cc251svw
title: CCDC 1997728: Experimental Crystal Structure Determination

description: Related Article: Panlong Ren, Xinyu Miao, Ting Tang, Yueting Wu, Jing Wang, Ying Zeng, Yun Li, Kun Gao, Yan-Long Yang|2020|Org.Biomol.Chem.|18|5850|doi:10.1039/D0OB01235A
DOI: 10.5517/ccdc.csd.cc251swx
title: CCDC 1997729: Experimental Crystal Structure Determination

description: Related Article: Panlong Ren, Xinyu Miao, Ting Tang, Yueting Wu, Jing Wang, Ying Zeng, Yun Li, Kun Gao, Yan-Long Yang|2020|Org.Biomol.Chem.|18|5850|doi:10.1039/D0OB01235A
DOI: 10.5517/ccdc.csd.cc251sxy
title: CCDC 1997730: Experimental Crystal Structure Determination

description: Related Article: Panlong Ren, Xinyu Miao, Ting Tang, Yueting Wu, Jing Wang, Ying Zeng, Yun Li, Kun Gao, Yan-Long Yang|2020|Org.Biomol.Chem.|18|5850|doi:10.1039/D0OB01235A
DOI: 10.5517/ccdc.csd.cc251syz
title: CCDC 1997731: Experimental Crystal Structure Determination

description: Related Article: Panlong Ren, Xinyu Miao, Ting Tang, Yueting Wu, Jing Wang, Ying Zeng, Yun Li, Kun Gao, Yan-Long Yang|2020|Org.Biomol.Chem.|18|5850|doi:10.1039/D0OB01235A
DOI: 10.25919/5f3f4de7f3220
title: Parkes observations for project P958 semester 2020APRS_27

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until last year, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last three years searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 35 bursts, eight of which have been localised to host galaxies at redshifts ranging from 0.1 to 0.5. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. However one of the arcminute-localised ASKAP FRBs has recently been found to repeat. Here we propose to search and study repetitions in this FRB population. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections to characterise the fraction of bursts that repeat. For bursts that repeat the unique wide bandwidth observations will be used to test leading models of burst emission.
DOI: 10.25919/5f3f4e144b437
title: Parkes observations for project P456 semester 2020APRS_05

description: The Parkes Pulsar Timing Array (PPTA) project has three primary goals: (a) detection of gravitational waves from astronomical sources, (b) establishment of a pulsar timescale, and (c) improvement of our understanding of Solar-system dynamics. The PPTA is the oldest of three international pulsar timing groups. We have the smallest telescope and the smallest group, but the best measurements and the best results. Our bound on the strength of the incoherent gravitational wave background is the only bound which significantly constrains theoretical models. We have maintained our leading position because: we have the southern sky; we have a small but well-focussed group; we have the best-calibrated receivers; and we have been able to observe with an almost regular cadence of 15 to 20 days over a wide bandwidth. With this proposal we aim to maintain our pre-eminent position in the field. Unlike most observing proposals, this is a continuing proposal for which the observations will continue to improve bounds on ultra-low-frequency gravitational waves until they are finally detected. Continued Parkes observations will remain valuable at least until the first stage of the SKA is able to improve on our sensitivity and observing cadence. Even after the gravitational wave background is detected we will want to continue observations in support of the nascent field of gravitational wave astronomy!
DOI: 10.5281/zenodo.3992873
title: Seismic efficiency of meteoroid strikes in Martian bedrock and regolith

description: Data set used in the submitted paper
DOI: 10.5281/zenodo.3992872
title: Seismic efficiency of meteoroid strikes in Martian bedrock and regolith

description: Data set used in the submitted paper
DOI: 10.5519/qd.aa75bvm8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (5919 records)
DOI: 10.25345/c5v75k
title: MassIVE MSV000085988 - GNPS CCL IS MSConvert mzML 20200821
title: mzML data from MSConvert. Format comparison with mzXML.
DOI: 10.5517/ccdc.csd.cc252f2s
title: CCDC 1998324: Experimental Crystal Structure Determination

description: Related Article: Carina Weber, Nina Vierengel, Thorsten Walter, Torsten Behrendt, Tobias Lucas, Gerhard Erkel, Till Opatz|2020|Org.Biomol.Chem.|18|5906|doi:10.1039/D0OB00958J
DOI: 10.5517/ccdc.csd.cc252f3t
title: CCDC 1998325: Experimental Crystal Structure Determination

description: Related Article: Carina Weber, Nina Vierengel, Thorsten Walter, Torsten Behrendt, Tobias Lucas, Gerhard Erkel, Till Opatz|2020|Org.Biomol.Chem.|18|5906|doi:10.1039/D0OB00958J
DOI: 10.5517/ccdc.csd.cc252f4v
title: CCDC 1998326: Experimental Crystal Structure Determination

description: Related Article: Carina Weber, Nina Vierengel, Thorsten Walter, Torsten Behrendt, Tobias Lucas, Gerhard Erkel, Till Opatz|2020|Org.Biomol.Chem.|18|5906|doi:10.1039/D0OB00958J
DOI: 10.5517/ccdc.csd.cc252mb7
title: CCDC 1998518: Experimental Crystal Structure Determination

description: Related Article: You-Dong Shao, Dan-Dan Han, Wen-Yue Ma, Dao-Juan Cheng|2020|Org.Chem.Front.|7|2255|doi:10.1039/D0QO00534G
DOI: 10.5517/ccdc.csd.cc252mc8
title: CCDC 1998519: Experimental Crystal Structure Determination

description: Related Article: You-Dong Shao, Dan-Dan Han, Wen-Yue Ma, Dao-Juan Cheng|2020|Org.Chem.Front.|7|2255|doi:10.1039/D0QO00534G
DOI: 10.5517/ccdc.csd.cc252mlh
title: CCDC 1998526: Experimental Crystal Structure Determination

description: Related Article: You-Dong Shao, Dan-Dan Han, Wen-Yue Ma, Dao-Juan Cheng|2020|Org.Chem.Front.|7|2255|doi:10.1039/D0QO00534G
DOI: 10.5281/zenodo.3974431
title: PARADE: Passage Representation Aggregation for Document Reranking

description: This submission includes all pretrained models on MSMARCO, and run files on the Robust04/GOV2 dataset for the paper "PARADE: Passage Representation Aggregation for Document Reranking". Please follow the instructions in the PARADE repo to reproduce the results.
DOI: 10.5281/zenodo.3993994
title: Integrative analyses of single-cell transcriptome and immune profiling reveal clonal expansion of T cells in the blood and cerebrospinal fluid of Parkinson's disease

description: An increasing number of studies has indicated that the immune system plays important roles in the pathogenesis of Parkinson's disease. However, little is known about the contribution of adaptive immune responses in Parkinson's disease. Here, we performed comprehensive integrative analyses of single-cell transcriptome and immune profiling of the blood of 8 Parkinson's patients and 13 healthy controls as well as the cerebrospinal fluid of 6 Parkinson's patients, 4 Alzheimer's patients, 5 mild cognitive impairment (MCI) patients and 9 healthy controls. In total, 22 T cell subsets with distinct functions and clonalities were identified from 121,402 T cells. We observed significant clonal expansion of effector CD8+ T cells in Parkinson's patients, which formed a gradient of transcriptional states from central memory CD8+ T cells to early effector CD8+ T cells followed by terminal effector CD8+ T cells. Shared TCRs in this progression suggest TCRs may be involved in the state transition of CD8+ T cells stimulated by antigens. Notably, we also found that a group of clonally expanded cytotoxic CD4+ T cells were significantly increased in Parkinson's patients compared to controls, suggesting their cytotoxic roles in Parkinson's disease. Finally, we screened putative TCR-antigen pairs that existed in both blood and cerebrospinal fluid of patients with Parkinson's disease. These results reveal an adaptive immune response in the blood and cerebrospinal fluid of Parkinson's disease and provide novel evidence of clonal, antigen-experienced T cells patrolling in the blood and cerebrospinal fluid of Parkinson's disease.
DOI: 10.5281/zenodo.3993993
title: Integrative analyses of single-cell transcriptome and immune profiling reveal clonal expansion of T cells in the blood and cerebrospinal fluid of Parkinson's disease

description: An increasing number of studies has indicated that the immune system plays important roles in the pathogenesis of Parkinson's disease. However, little is known about the contribution of adaptive immune responses in Parkinson's disease. Here, we performed comprehensive integrative analyses of single-cell transcriptome and immune profiling of the blood of 8 Parkinson's patients and 13 healthy controls as well as the cerebrospinal fluid of 6 Parkinson's patients, 4 Alzheimer's patients, 5 mild cognitive impairment (MCI) patients and 9 healthy controls. In total, 22 T cell subsets with distinct functions and clonalities were identified from 121,402 T cells. We observed significant clonal expansion of effector CD8+ T cells in Parkinson's patients, which formed a gradient of transcriptional states from central memory CD8+ T cells to early effector CD8+ T cells followed by terminal effector CD8+ T cells. Shared TCRs in this progression suggest TCRs may be involved in the state transition of CD8+ T cells stimulated by antigens. Notably, we also found that a group of clonally expanded cytotoxic CD4+ T cells were significantly increased in Parkinson's patients compared to controls, suggesting their cytotoxic roles in Parkinson's disease. Finally, we screened putative TCR-antigen pairs that existed in both blood and cerebrospinal fluid of patients with Parkinson's disease. These results reveal an adaptive immune response in the blood and cerebrospinal fluid of Parkinson's disease and provide novel evidence of clonal, antigen-experienced T cells patrolling in the blood and cerebrospinal fluid of Parkinson's disease.
DOI: 10.5517/ccdc.csd.cc255kqn
title: CCDC 2001351: Experimental Crystal Structure Determination

description: Related Article: Álvaro Beltrán, Inmaculada Gata, Celia Maya, João Avó, João Carlos Lima, César A. T. Laia, Riccardo Peloso, Mani Outis, M. Carmen Nicasio|2020|Inorg.Chem.|59|10894|doi:10.1021/acs.inorgchem.0c01397
DOI: 10.6084/m9.figshare.12762107
title: Supplementary Data and Codes for manuscript entitled "Vortex phase matching as a strategy for schooling in robots and in fish"

description: -power_cost_RobotifFish: All power cost data for the robotic fish<br>-average_power_cost_RobotifFish: Data of average power cost of robotic fish<br>-src_RoboticFish.zip: Codes for the robotic fish data<br>-DicInfo_Speedy_AllData_OnlyD.pkl: all real fish data. Open with python pickle.<br>-src_RealFish.zip: Python code for analyzing real fish data
DOI: 10.21252/zcfy-cw20
title: X-ray diffraction data for structure associated with PDB ID: 6ZR0
DOI: 10.21252/2ndt-aq43
title: X-Ray diffraction data for structure associated with PDB ID: 6ZR4
DOI: 10.5281/zenodo.3994120
title: Atom coordinates for molecular dynamics

description: Atom coordinates for molecular dynamics. For use as initial states.
DOI: 10.5281/zenodo.3769669
title: Atom coordinates for molecular dynamics

description: Atom coordinates for molecular dynamics. For use as initial states.
DOI: 10.6084/m9.figshare.12833711
title: TH temperature-dependent effects_data and code.zip

description: Data and R code for producing the results in "Testing for context-dependent effects of prenatal thyroid hormones on offspring survival and physiology: an experimental temperature manipulation" in Scientific Reports (doi: 10.1038/s41598-020-71511-y)
DOI: 10.6084/m9.figshare.12833711.v1
title: TH temperature-dependent effects_data and code.zip

description: Data and R code for producing the results in "Testing for context-dependent effects of prenatal thyroid hormones on offspring survival and physiology: an experimental temperature manipulation" in Scientific Reports (doi: 10.1038/s41598-020-71511-y)
DOI: 10.5517/cc1jfb4f
title: CCDC 1412984: Experimental Crystal Structure Determination

description: Related Article: Simon Parsons, Fiona Mackay, Peter Sadler|2015|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2582k3
title: CCDC 2003764: Experimental Crystal Structure Determination

description: Related Article: Hongshan Ke, Yongsheng Yang, Wen Wei, Youdong Jiang, Yi-Quan Zhang, Gang Xie, Sanping Chen|2020|Dalton Trans.|49|10594|doi:10.1039/D0DT02139C
DOI: 10.5281/zenodo.3994119
title: Montolo

description: Montolo is a knowledge graph which describes concepts related to RDF data models. Currently it contains concepts related to restrictions: ontological axioms and data constraints. The concepts are described using the W3C Data Cube and W3C PROV compliant Montolo-Voc vocabulary. Statistical datasets which refer to descriptions in Montolo are MontoloStats (owl axioms) and MontoloSHACLStats (SHACL constraints). Additionally, descriptions of <em>Restriction Type Expressions</em> in Montolo are aligned with the Astrea Knowledge Graph.
description: {"references": ["Lieber, S., De Meester, B., Dimou, A., & Verborgh, R. (2019, September). MontoloStats-Ontology Modeling Statistics. In Proceedings of the 10th International Conference on Knowledge Capture (pp. 69-76)."]}
DOI: 10.5281/zenodo.3343312
title: Montolo

description: Montolo is a knowledge graph which describes concepts related to RDF data models. Currently it contains concepts related to restrictions: ontological axioms and data constraints. The concepts are described using the W3C Data Cube and W3C PROV compliant Montolo-Voc vocabulary. Statistical datasets which refer to descriptions in Montolo are MontoloStats (owl axioms) and MontoloSHACLStats (SHACL constraints). Additionally, descriptions of <em>Restriction Type Expressions</em> in Montolo are aligned with the Astrea Knowledge Graph.
description: {"references": ["Lieber, S., De Meester, B., Dimou, A., & Verborgh, R. (2019, September). MontoloStats-Ontology Modeling Statistics. In Proceedings of the 10th International Conference on Knowledge Capture (pp. 69-76)."]}
DOI: 10.5281/zenodo.3994138
title: Pure POPC Membrane with 350mM NaCl simulations using Drude Polarizable Force Field and OpenMM

description: 500 ns MD simulation of pure POPC membrane using Charmm-Drude polarizable force field. The system contains 144 POPC lipids, 41 NaCl, and 6400 SWM4 water molecules. The simulation have been performed using OpenMM 7.4.1 Frames are saved in every 100 ps. Before running the Drude simulation, the system has been equilibriated using Charmm36 force field for 200 ns. The last frame of that simulation was used to generate Drude polarizable model. The first 100 ns of the Drude simulation has been discarded from this dataset. <strong>Please note that</strong> the trajectories might need to be reimaged.
DOI: 10.5281/zenodo.3994158
title: An Anisian peripheral foreland basin in the northern Yangtze Block, implications for the collision between the South and North China Blocks

description: LA-ICP-MS zircon U-Pb isotopic data for the sandstone samples from the Middle to Upper Triassic successions in the northern Sichuan Basin and Zigui Basin. Four sandstone samples were collected from the lowermost Upper Triassic strata that unconformably overlie the Leikoupo Formation for detrital zircon analysis. The Upper Triassic Xujiahe Formation is generally considered to mark the transition from a marine platform to a terrestrial basin on the upper Yangtze Block (Meng et al., 2005). In the Guangyuan and Wangcang areas, we collected three sandstone samples from the lower portion of the Xujiahe Formation. At the Ma’antang train station, we collected one sandstone sample from the Ma’antang Formation, which is a transitional deposit from marine to terrestrial environments in front of Longmen Shan. The analysis was conducted with laser ablation inductively coupled plasma mass spectrometer (LA-ICPMS) at the Key Laboratory of Continental Collision and Plateau Uplift, Chinese Academy of Sciences (CAS). Analytical methods were described in detail by Cai et al. (2012) and are briefly described here. A total of 362 zircon grains from 4 samples produced data of sufficient precision for geochronological interpretation.
DOI: 10.5281/zenodo.3994157
title: An Anisian peripheral foreland basin in the northern Yangtze Block, implications for the collision between the South and North China Blocks

description: LA-ICP-MS zircon U-Pb isotopic data for the sandstone samples from the Middle to Upper Triassic successions in the northern Sichuan Basin and Zigui Basin. Four sandstone samples were collected from the lowermost Upper Triassic strata that unconformably overlie the Leikoupo Formation for detrital zircon analysis. The Upper Triassic Xujiahe Formation is generally considered to mark the transition from a marine platform to a terrestrial basin on the upper Yangtze Block (Meng et al., 2005). In the Guangyuan and Wangcang areas, we collected three sandstone samples from the lower portion of the Xujiahe Formation. At the Ma’antang train station, we collected one sandstone sample from the Ma’antang Formation, which is a transitional deposit from marine to terrestrial environments in front of Longmen Shan. The analysis was conducted with laser ablation inductively coupled plasma mass spectrometer (LA-ICPMS) at the Key Laboratory of Continental Collision and Plateau Uplift, Chinese Academy of Sciences (CAS). Analytical methods were described in detail by Cai et al. (2012) and are briefly described here. A total of 362 zircon grains from 4 samples produced data of sufficient precision for geochronological interpretation.
DOI: 10.5517/ccdc.csd.cc20szh9
title: CCDC 1871051: Experimental Crystal Structure Determination

description: Related Article: Kamila B. Muchowska, Dominic J. Pascoe, Stefan Borsley, Ivan V. Smolyar, Ioulia K. Mati, Catherine Adam, Gary S. Nichol, Kenneth B. Ling, Scott L. Cockroft|2020|Angew.Chem.,Int.Ed.|59|14602|doi:10.1002/anie.202005739
DOI: 10.5517/ccdc.csd.cc1zkb40
title: CCDC 1833902: Experimental Crystal Structure Determination

description: Related Article: Casey A. Rowland, Gregory R. Lorzing, Rameswar Bhattacharjee, Stavros Caratzoulas, Glenn P. A. Yap, Eric D. Bloch|2020|Chem.Commun.|56|9352|doi:10.1039/D0CC03910A
DOI: 10.5517/ccdc.csd.cc2353zd
title: CCDC 1941343: Experimental Crystal Structure Determination

description: Related Article: Casey A. Rowland, Gregory R. Lorzing, Rameswar Bhattacharjee, Stavros Caratzoulas, Glenn P. A. Yap, Eric D. Bloch|2020|Chem.Commun.|56|9352|doi:10.1039/D0CC03910A
DOI: 10.25345/c5qf3n
title: MassIVE MSV000085989 - GNPS CCL IS lcms unifi Pos MSCNVT 20200821
title: LC-MS data of 3 CCL compounds collected using Unifi under positive ionization mode and converted using MSConvert.
DOI: 10.5517/ccdc.csd.cc23540g
title: CCDC 1941344: Experimental Crystal Structure Determination

description: Related Article: Casey A. Rowland, Gregory R. Lorzing, Rameswar Bhattacharjee, Stavros Caratzoulas, Glenn P. A. Yap, Eric D. Bloch|2020|Chem.Commun.|56|9352|doi:10.1039/D0CC03910A
DOI: 10.5517/ccdc.csd.cc23541h
title: CCDC 1941345: Experimental Crystal Structure Determination

description: Related Article: Casey A. Rowland, Gregory R. Lorzing, Rameswar Bhattacharjee, Stavros Caratzoulas, Glenn P. A. Yap, Eric D. Bloch|2020|Chem.Commun.|56|9352|doi:10.1039/D0CC03910A
DOI: 10.5517/ccdc.csd.cc23542j
title: CCDC 1941346: Experimental Crystal Structure Determination

description: Related Article: Casey A. Rowland, Gregory R. Lorzing, Rameswar Bhattacharjee, Stavros Caratzoulas, Glenn P. A. Yap, Eric D. Bloch|2020|Chem.Commun.|56|9352|doi:10.1039/D0CC03910A