cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5942574
title: 3D nuclei instance segmentation dataset of fluorescence microscopy volumes of C. elegans

description: The dataset consists of 28 confocal microscopy volumes of C. elegans worms at the L1 stage and corresponding stacks of densely annotated nuclei instance segmentation masks. * 28 raw images and corresponding masks of average dimension (xyz) 1050 x 140 x 140<br> * Pixelsize (xyz): 0.116 x 0.116 x 0.122μm<br> * Microscope: Leica confocal microscopy, 63x oil objective <br> The original raw data and preliminary annotations were part of the following publication (please cite if you use the dataset):<br> <br> <em>Long, F., Peng, H., Liu, X., Kim, S. K., & Myers, E. (2009). A 3D digital atlas of C. elegans and its application to single-cell analyses. Nature methods, 6(9), 667-672.</em> The nuclei annotation masks were further manually curated by Dagmar Kainmueller (MDC Berlin) for the following publication: <em>Hirsch, P., & Kainmueller, D. (2020). An auxiliary task for learning nuclei segmentation in 3d microscopy images. In Medical Imaging with Deep Learning (pp. 304-321). PMLR.</em> We provide the dataset already structured into the train/validation/test split as used by the above as well as the following publications: <em>Weigert, M., Schmidt, U., Haase, R., Sugawara, K., & Myers, G. (2020). Star-convex polyhedra for 3d object detection and segmentation in microscopy. In Proceedings of the IEEE/CVF Winter Conference on Applications of Computer Vision (pp. 3666-3673).</em><br>
DOI: 10.6084/m9.figshare.16458948.v1
title: 2004-03-12 14-04 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-12<br><br><b>End date:</b> 2004-03-12<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458951.v1
title: 2004-03-17 14-40 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-17<br><br><b>End date:</b> 2004-03-17<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458957.v1
title: 2004-03-17 15-00 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-17<br><br><b>End date:</b> 2004-03-17<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458960.v1
title: 2004-03-17 15-44 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-17<br><br><b>End date:</b> 2004-03-17<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458966.v1
title: 2004-03-17 19-48 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-17<br><br><b>End date:</b> 2004-03-17<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458969.v1
title: 2004-03-17 20-50 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-17<br><br><b>End date:</b> 2004-03-17<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458972.v1
title: 2004-03-25 13-16 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458981.v1
title: 2004-03-25 13-16 Lake Rotorua

description: A CTD cast on Lake Rotorua<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotorua<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458984.v1
title: 2004-03-25 14-33 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458987.v1
title: 2004-03-25 14-52 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458990.v1
title: 2004-03-25 15-28 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16458996.v1
title: 2004-03-25 17-55 Lake Rotoiti (Crater)

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16459002.v1
title: 2004-03-25 18-37 Lake Rotoiti (Narrows)

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-25<br><br><b>End date:</b> 2004-03-25<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16459005.v1
title: 2004-03-31 09-54 Lake Rotorua

description: A CTD cast on Lake Rotorua<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-31<br><br><b>End date:</b> 2004-03-31<br><br><b>Lake:</b> Lake Rotorua<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.
DOI: 10.6084/m9.figshare.16459008.v1
title: 2004-03-31 14-18 Lake Rotoiti

description: A CTD cast on Lake Rotoiti<br><br><b>Quality control:</b> Calibration; Model; Sensor height (m)<br><br><b>Type of waterbody:</b> Lake<br><br><b>Variables:</b> Beam Transmission; Chlorophyll Fluorescence; Conductivity; Dissolved Oxygen Concentration; Dissolved Oxygen Saturation; Photosynthetically Active Radiation; Salinity; Specific Conductance; Water Temperature<br><br><b>Start date:</b> 2004-03-31<br><br><b>End date:</b> 2004-03-31<br><br><b>Lake:</b> Lake Rotoiti<br><br><b>Region:</b> Bay of Plenty<br><br>This dataset was originally hosted in the LERNZdb freshwater data repository that was developed as part of the Lake Ecosystem Restoration New Zealand (LERNZ) project run by the Environmental Research Institute at the University of Waikato, New Zealand. <br><br>In retrieving LERNZdb material you agree that you rely on the data at your own risk; the University of Waikato offers no warranty or representation that the data is fit for any particular purpose, or free from defects, and will not be liable for any losses or damages whatsoever including any indirect, special, incidental or consequential damages incurred by you arising out of the use of the database or in reliance on the data retrieved. You agree that data is not of a kind ordinarily supplied for personal or domestic purposes, and that the Consumer Guarantees Act 1993 does not apply.