cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7912878
title: Intrinsic TGF-b Signaling Attenuates Proximal Tubule Mitochondrial Injury and Inflammation in Chronic Kidney Disease

description: Bulk RNA sequencing processed count files for the article titled "Intrinsic TGF-b Signaling Attenuates Proximal Tubule Mitochondrial Injury and Inflammation in Chronic Kidney Disease", by Nlandu Khodo et al., in review. Corresponding GEO submission can be found here: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE225545
DOI: 10.6084/m9.figshare.21521211
title: Aciurina gall data associated with hypergall Rhopalomyia midge

description: Species counts of insects reared from Aciurina galls in 2021-2022, aggregated by date of emergence, and by individual gall. Separate dataset with Aciurina fly wing length and thier associated hypergall counts.
DOI: 10.7303/syn25649159
title: Fetal Tissue Annotation Challenge - FeTA MICCAI 2021
DOI: 10.15468/z0b8f9
title: GRIIS Checklist of Introduced and Invasive Species - Yemen

description: The Global Register of Introduced and Invasive Species (GRIIS) presents validated and verified checklists (inventories) of introduced (alien) and invasive alien species at the country level. Phase 1 of the project has focused on developing validated and verified checklists (inventories) of countries that are Party to the Convention on Biological Diversity. This annotated checklist (inventory) is of introduced (alien) and invasive alien species known to occur Yemen.
DOI: 10.6084/m9.figshare.22785944
title: Fine_grained_annotations.json

description: A dataset consisting of Fine-grained news annotations performed based on a framework for fine-grained news classification.
DOI: 10.6084/m9.figshare.22785944.v1
title: Fine_grained_annotations.json

description: A dataset consisting of Fine-grained news annotations performed based on a framework for fine-grained news classification.
DOI: 10.4121/c347ef69-d14b-4a79-89c6-c936b396ceb8.v1
title: Supplementary data for the paper: Responses to Raven Matrices: Governed by Visual Complexity and Centrality?

description: Raven matrices are widely considered a pure test of cognitive abilities. Previous research has examined the extent to which cognitive strategies, as inferred through eye-tracking measures, are predictive of the number of correct responses to Raven items. This study aimed to determine whether response times can be explained directly from the centrality and visual complexity of the matrix cells (edge density and perceived complexity). A total of 159 participants completed a 12-item version of the Raven’s Advanced Progressive Matrices. In addition to item number as an index of item difficulty, the findings demonstrated a positive correlation between the visual complexity of Raven items and both the mean response time and the number of fixations on the matrix (which is a strong indicator of response time). The results also revealed that more centrally placed and more complex cells received more fixations. It is concluded that response times on Raven matrices are impacted by low-level stimulus attributes, namely visual complexity and eccentricity.
DOI: 10.6084/m9.figshare.19207871
title: Effects of informal institutions on stakeholder and public participation in public infrastructure megaprojects: a case study of Shanghai

description: Public participation in public infrastructure megaprojects (PIMs) is ineffective, and research on the issues of informal institutions’ influence on stakeholders is limited. The present study answered how informal institutions influence the practices of public participation while conflicts occur among stakeholders. Two PIMs in China were used as case studies to investigate the effects of informal institutions. The paper suggests that the adversarial relationships among stakeholders can be reconciled by recognizing that informal institutions encompass the social responsibility of PIMs (SR-PIMs) and culture. Results also showed that effective public participation entails the fulfillment of SR-PIMs by responsible behaviors of stakeholders and the positive effect of cultural tension, enabling participatory awareness of stakeholders. This study improves understanding of how to mobilize stakeholders in practice with responsible behaviors to reach a consensus.
DOI: 10.6084/m9.figshare.19207871.v1
title: Effects of informal institutions on stakeholder and public participation in public infrastructure megaprojects: a case study of Shanghai

description: Public participation in public infrastructure megaprojects (PIMs) is ineffective, and research on the issues of informal institutions’ influence on stakeholders is limited. The present study answered how informal institutions influence the practices of public participation while conflicts occur among stakeholders. Two PIMs in China were used as case studies to investigate the effects of informal institutions. The paper suggests that the adversarial relationships among stakeholders can be reconciled by recognizing that informal institutions encompass the social responsibility of PIMs (SR-PIMs) and culture. Results also showed that effective public participation entails the fulfillment of SR-PIMs by responsible behaviors of stakeholders and the positive effect of cultural tension, enabling participatory awareness of stakeholders. This study improves understanding of how to mobilize stakeholders in practice with responsible behaviors to reach a consensus.
DOI: 10.17632/tk22chcyys.1
title: Data associated with "Contributions of hypolithic communities to surface soil organic carbon across a hyperarid-to-arid climate gradient"

description: Carbon (C) in soils accounts for a substantial and dynamic portion of the global C cycle, with concentrations of soil organic carbon (SOC) typically closely linked to vascular plant productivity. However, C fixed by non-vascular photosynthetic organisms may account for a sizeable proportion of SOC in locations where vascular plants are not abundant. In the hyperarid Namib Desert, vascular plant growth is very limited and largely ephemeral. Extreme abiotic conditions even limit establishment of cyanobacterial soil crusts, with photoautotrophic cyanobacteria largely restricted to the undersides of translucent quartz clasts that buffer environmental extremes. The importance of these ‘hypoliths’ in enhancing SOC pools, and how this may vary with climate and clast physical characteristics, remains unknown. We worked across a rainfall and fog gradient in the central Namib to assess quartz clast size and distribution, factors affecting the probability of hypolithic colonization, and the landscape-level influence of hypoliths on surface SOC pools. Clast colonization increased with clast thickness and with increasing mean annual rainfall. SOC and chlorophyll a (a proxy for cyanobacterial biomass) concentrations were greater under colonized quartz clasts than under non-quartz clasts or in bare soil. Landscape-level SOC, estimated by combining SOC concentration with the distribution and colonization of quartz clasts, was greatest at the site with the highest rainfall and lowest at a mid-gradient site with moderate rainfall and fog. Climate change scenarios that promote quartz colonization have the potential to double SOC pools at the mid-gradient site, although SOC changes would be more muted at other sites. Low vascular plant and biocrust cover in the Namib Desert allows hypolithic communities to play an outsized role in SOC pools; a loss of all hypolithic cyanobacteria would lead to 10-20% declines in surface SOC pools. Future climate change has the potential to shift surface SOC if it alters cyanobacterial colonization of quartz.
DOI: 10.5281/zenodo.7889690
title: D2.1 - Demonstrator baseline and market characteristics report - Transcripts of interviews with a German company

description: This is the transcript of the interviews with a German company for D2.1 "Demonstrator baseline and market characteristics report" defining the current baseline and the target/improved circular business models for two demonstrators and analyzing both demonstrators´ market characteristics and their impact on the target circular business models.
DOI: 10.5281/zenodo.7889691
title: D2.1 - Demonstrator baseline and market characteristics report - Transcripts of interviews with a German company

description: This is the transcript of the interviews with a German company for D2.1 "Demonstrator baseline and market characteristics report" defining the current baseline and the target/improved circular business models for two demonstrators and analyzing both demonstrators´ market characteristics and their impact on the target circular business models.
DOI: 10.5281/zenodo.5849856
title: Dataset for "The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times"

description: Dataset for: Kopij, K. and Bała, S. (2021). The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times. Polish Archaeology in the Mediterranean 30/2) (pp. 181–201). https://doi.org/10.31338/uw.2083-537X.pam30.2.28
description: {"references": ["Kopij, K. and Ba\u0142a, S. (2021). The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times. Polish Archaeology in the Mediterranean 30/2) (pp. 181\u2013201). https://doi.org/10.31338/uw.2083-537X.pam30.2.28"]}
DOI: 10.5281/zenodo.4501164
title: Dataset for "Mints locations and chronology of Gnaeus and Sextus Pompey's bronze coinage (RRC 471, 478 and 479): a die axes study", Notae Numismaticae XV 2020

description: Dataset for "Mints locations and chronology of Gnaeus and Sextus Pompey’s bronze coinage (RRC 471, 478 and 479): a die axes study", Notae Numismaticae XV, 2020: https://mnk.pl/artykul/tytul-mints-locations-and-chronology-of-gnaeus-and-sextus-pompey-s-bronze-coinage
description: {"references": ["http://numismatics.org/crro/", "MARTINI, R. 1995. Sextus Pompeius: le emissioni hispaniche del tipo CN-AAG, le serie di Eppius e gli assi siciliani. Milano."]}
DOI: 10.5281/zenodo.4501163
title: Dataset for "Mints locations and chronology of Gnaeus and Sextus Pompey's bronze coinage (RRC 471, 478 and 479): a die axes study", Notae Numismaticae XV 2020

description: Dataset for "Mints locations and chronology of Gnaeus and Sextus Pompey’s bronze coinage (RRC 471, 478 and 479): a die axes study", Notae Numismaticae XV, 2020: https://mnk.pl/artykul/tytul-mints-locations-and-chronology-of-gnaeus-and-sextus-pompey-s-bronze-coinage
description: {"references": ["http://numismatics.org/crro/", "MARTINI, R. 1995. Sextus Pompeius: le emissioni hispaniche del tipo CN-AAG, le serie di Eppius e gli assi siciliani. Milano."]}
DOI: 10.5281/zenodo.5849855
title: Dataset for "The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times"

description: Dataset for: Kopij, K. and Bała, S. (2021). The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times. Polish Archaeology in the Mediterranean 30/2) (pp. 181–201). https://doi.org/10.31338/uw.2083-537X.pam30.2.28
description: {"references": ["Kopij, K. and Ba\u0142a, S. (2021). The Gobolitide (Al-Jibal) microregion: geography and settlement network evolution from Nabataean to Byzantine times. Polish Archaeology in the Mediterranean 30/2) (pp. 181\u2013201). https://doi.org/10.31338/uw.2083-537X.pam30.2.28"]}
DOI: 10.5281/zenodo.5566367
title: Dataset for "Common Propaganda Devices in Late Republican Coinage, 79-31 BCE"

description: Dataset for "Common Propaganda Devices in Late Republican Coinage, 79-31 BCE" published in "Numismatica e Antichità Classiche" 50, 2021
description: {"references": ["Kopij, Kamil \"Common Propaganda Devices in Late Republican Coinage, 79-31 BCE\", Numismatica e Antichit\u00e0 Classiche\" 50, 2021"]}
DOI: 10.5281/zenodo.5566366
title: Dataset for "Common Propaganda Devices in Late Republican Coinage, 79-31 BCE"

description: Dataset for "Common Propaganda Devices in Late Republican Coinage, 79-31 BCE" published in "Numismatica e Antichità Classiche" 50, 2021
description: {"references": ["Kopij, Kamil \"Common Propaganda Devices in Late Republican Coinage, 79-31 BCE\", Numismatica e Antichit\u00e0 Classiche\" 50, 2021"]}
DOI: 10.6084/m9.figshare.21531394
title: Caterpillar sonic defences: mechanisms and diversity of mandible stridulation in silk and hawk moth (Bombycoidea) larvae

description: Silk and hawk moth caterpillars produce a variety of defence sounds described as clicking, chirping, whistling, and vocalising. Such diversity provides opportunity to test hypotheses on the functions and evolution of insect defence sounds using comparative analyses. A key step to conducting comparative analyses is to categorise different phenotypes. Here, we describe mandible sounds of 20 species of late instar Bombycoidea caterpillars and establish objective criteria for differentiating between sound-producing mechanisms. First, we assess how the two mandibular mechanisms – clicking and chirping – differ from one another using two reference species: <i>Antheraea polyphemus</i> (clicker) and <i>Saturnia pyri</i> (chirper). In these references, clicks are produced by ridged and serrated mandibles and have short duration units with few pulses, whereas chirps are produced by scalloped mandibles and have longer duration units with more pulses. Second, we characterise acoustic and morphological traits of 18 additional species. These are categorised as clickers (13 species), chirpers (4 species), or other (1 species) using diagnostic features identified from the reference species. Third, these categorisations are tested using a predictive logistic regression model. The results of this study contribute to our understanding of acoustically mediated defences in caterpillars and provide necessary criteria for conducting further comparative studies.
DOI: 10.6084/m9.figshare.21531394.v1
title: Caterpillar sonic defences: mechanisms and diversity of mandible stridulation in silk and hawk moth (Bombycoidea) larvae

description: Silk and hawk moth caterpillars produce a variety of defence sounds described as clicking, chirping, whistling, and vocalising. Such diversity provides opportunity to test hypotheses on the functions and evolution of insect defence sounds using comparative analyses. A key step to conducting comparative analyses is to categorise different phenotypes. Here, we describe mandible sounds of 20 species of late instar Bombycoidea caterpillars and establish objective criteria for differentiating between sound-producing mechanisms. First, we assess how the two mandibular mechanisms – clicking and chirping – differ from one another using two reference species: <i>Antheraea polyphemus</i> (clicker) and <i>Saturnia pyri</i> (chirper). In these references, clicks are produced by ridged and serrated mandibles and have short duration units with few pulses, whereas chirps are produced by scalloped mandibles and have longer duration units with more pulses. Second, we characterise acoustic and morphological traits of 18 additional species. These are categorised as clickers (13 species), chirpers (4 species), or other (1 species) using diagnostic features identified from the reference species. Third, these categorisations are tested using a predictive logistic regression model. The results of this study contribute to our understanding of acoustically mediated defences in caterpillars and provide necessary criteria for conducting further comparative studies.
DOI: 10.6084/m9.figshare.20514014
title: In-air acoustic repertoire and associated behaviour of wild juvenile crabeater seals during rehabilitation

description: In-air sounds of pinnipeds are important for interactions with conspecifics and threat displays. However, little is known about the in-air acoustic repertoire and associated behaviour of crabeater seals <i>Lobodon carcinophaga</i>. We investigated the in-air acoustic repertoire and associated behaviour of two male and one female wild juvenile crabeater seals that beached separately, and were rehabilitated in Durban and Gqeberha, South Africa. In-air sounds were visually identified and categorised into five classes validated via random forest model classification: brief, intermediate, and long moan calls, croaks, and hisses. Hisses were common (n = 25,105 sounds from 136 hrs of acoustic recordings) and detected during heightened arousal states and interactions with animal care staff and a conspecific. Furthermore, hisses were also recorded in low arousal states during exhalation. Moan calls (n = 241) were only detected from two of the three seals. During rehabilitation, the female seal ceased producing moan calls and later produced a series of croaks (n = 204). Acoustic characteristics of in-air moan calls differed from published underwater moan calls according to duration, minimum, and maximum frequencies, and pulse repetition rate. Our study shows that the in-air acoustic repertoire and associated behaviour of these Antarctic seals are dynamic, vary inter-individually and are context dependent.
DOI: 10.6084/m9.figshare.20514014.v1
title: In-air acoustic repertoire and associated behaviour of wild juvenile crabeater seals during rehabilitation

description: In-air sounds of pinnipeds are important for interactions with conspecifics and threat displays. However, little is known about the in-air acoustic repertoire and associated behaviour of crabeater seals <i>Lobodon carcinophaga</i>. We investigated the in-air acoustic repertoire and associated behaviour of two male and one female wild juvenile crabeater seals that beached separately, and were rehabilitated in Durban and Gqeberha, South Africa. In-air sounds were visually identified and categorised into five classes validated via random forest model classification: brief, intermediate, and long moan calls, croaks, and hisses. Hisses were common (n = 25,105 sounds from 136 hrs of acoustic recordings) and detected during heightened arousal states and interactions with animal care staff and a conspecific. Furthermore, hisses were also recorded in low arousal states during exhalation. Moan calls (n = 241) were only detected from two of the three seals. During rehabilitation, the female seal ceased producing moan calls and later produced a series of croaks (n = 204). Acoustic characteristics of in-air moan calls differed from published underwater moan calls according to duration, minimum, and maximum frequencies, and pulse repetition rate. Our study shows that the in-air acoustic repertoire and associated behaviour of these Antarctic seals are dynamic, vary inter-individually and are context dependent.
DOI: 10.25625/l9rhau/iv2wkm
title: pendel.tab

description: :unav
DOI: 10.25625/l9rhau
title: Pendelschwingung

description: syntetische Schwingungsdauern eines Pendels zur Datenanalyse
DOI: 10.5281/zenodo.7912961
title: HLCA - Krasnow et al study

description: Subset of HLCA dataset with only one study corresponding to Krasnow et al
DOI: 10.5281/zenodo.7912960
title: HLCA - Krasnow et al study

description: Subset of HLCA dataset with only one study corresponding to Krasnow et al
DOI: 10.25442/hku.22778150
title: Supporting data for "Inhibition of Polo-Like Kinase 4 induced both cell intrinsic and non-cell intrinsic anti-leukemia effects on <em>TP53</em> mutated acute myeloid leukemia"

description: Acute myeloid leukemia (AML) carrying <em>TP53</em> mutations is a distinct subtype characterized by genomic and chromosomal instability and a complex and monosomy karyotype (CK/MK). <em>TP53</em> mutated AML portends an extremely grave prognosis and is refractory to conventional chemotherapy and allogeneic hematopoietic stem cells transplantation (HSCT). There is an unmet clinical need to develop novel therapeutic strategy for this disease. In an <em>in-silico</em> analysis to identify specific gene signatures of <em>TP53</em> mutated AML, Polo-Like Kinase 4 (<em>PLK4</em>) was found to be highly expressed in this AML subtype. PLK4 is the master regulator of centriole duplication and cytokinesis and has been investigated as a target for therapeutic intervention in cancers. We hypothesized that PLK4 inhibition may perturb the oncogenic pathway of <em>TP53</em> mutated AML. Twelve-day treatment with PLK4 inhibitor CFI-400945 as well as gene knockout by CRISPR/Cas 9 suppressed cellular proliferation of <em>TP53</em> mutated AML cell lines <em>in vitro</em>. CFI-400945 treatment for two days induced DNA damage as evident by γH2AX staining and cellular senescence by β-galactosidase (SA-β-Gal) staining. There was progressive increase in DNA ploidy and number of microtubule organizing center (MTOC), consistent with defective cytokinesis, which was demonstrable by time-lapsed microscopy. Cytoplasmic chromatin could be readily identified in the polyploid cells. Transcriptome analyses of <em>TP53</em> mutated K052 cell line treated with CFI-400945 demonstrated induction of senescence-associated secretory phenotype (SASP), occurring before the onset of polyploidy. Quantitative RT-PCR and ELISA assay confirmed the increase of <em>CCL2</em>, <em>CXCL8</em>, <em>IL10</em>, <em>IL6</em>, <em>TNF-α</em> and <em>IFN-γ </em>upon CFI-400945 treatment. Both M1 macrophages and T-cells were activated upon co-culture with K052 in the presence of CFI-400945, as evident by the respective increases in phagocytic activity and intracellular IFN-γ/TNF-α. Mechanistically, CFI-400945 induced increase in STING dimers and cGAMP levels and cellular senescence could be ameliorated by STING and cGAS inhibitors. Therapeutically, CFI-400945 treatment <em>in vivo</em> significantly reduced bioluminescence of NSG mice transplanted with luciferase tagged K052 cells, resulting in prolonged survival of recipient animals. The <em>in vivo</em> effects could be potentiated by concomitant treatment with anti-CD47 monoclonal antibody (B6H12), which binds to human CD47 and blocks the interaction with macrophages receptor SIRPα, leading to phagocytosis of leukemic cells. Our results demonstrated that PLK4 inhibition exerted both cell intrinsic and non-cell intrinsic therapeutic effects on <em>TP53</em> mutated AML with the latter being mediated by activation of cGAS/STING pathway hence both innate and adaptive immunity. <br>