cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0191431.10fu
title: SH0191431.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.42vq33
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((77.912282 20.223173, 77.837436 20.217597, 77.764448 20.201007, 77.69512899999999 20.173814, 77.631199 20.136695, 77.574237 20.090569, 77.525648 20.036578, 77.486627 19.976061, 77.458127 19.910513, 77.440838 19.841553, 77.435171 19.770883, 77.441253 19.700243, 77.458917 19.631372, 77.487714 19.565962, 77.526926 19.505619, 77.575581 19.451822, 77.63247699999999 19.405889, 77.696217 19.368943, 77.765238 19.341889, 77.837851 19.325388, 77.912282 19.319842, 77.98671299999999 19.325388, 78.059326 19.341889, 78.12834700000001 19.368943, 78.192087 19.405889, 78.248983 19.451822, 78.29763800000001 19.505619, 78.33685 19.565962, 78.365647 19.631372, 78.38331100000001 19.700243, 78.389393 19.770883, 78.383726 19.841553, 78.366437 19.910513, 78.337937 19.976061, 78.29891600000001 20.036578, 78.250327 20.090569, 78.193365 20.136695, 78.129435 20.173814, 78.06011599999999 20.201007, 77.987128 20.217597, 77.912282 20.223173))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001963-260108223611665/datasets/export for details.
DOI: 10.15468/dl.5rqj59
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.852968 -33.085643, 147.859705 -33.085643, 147.859705 -33.078905, 147.855214 -33.078905, 147.855214 -33.081151, 147.852968 -33.081151, 147.852968 -33.085643)), ((147.852968 -33.085643, 147.848476 -33.085643, 147.848476 -33.087889, 147.852968 -33.087889, 147.852968 -33.085643)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068226-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26578910.v1
title: Additional file 5 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 5
DOI: 10.25345/c50r9mg1q
title: MassIVE MSV000095612 - Untargeted Metabolomics of Cultivable Microbiota Associated with Mesopelagic organisms from the Irminger Sea
title: Crude extracts of the bacterial community in the mesopelagic zone of the Irminger Sea, Iceland
DOI: 10.6084/m9.figshare.26578910
title: Additional file 5 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.26578904
title: Additional file 3 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.26578907.v1
title: Additional file 4 of Understanding host response to infectious salmon anaemia virus in an Atlantic salmon cell line using single-cell RNA sequencing

description: Supplementary Material 4
DOI: 10.15468/dl.v32fgu
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((147.936063 -33.085643, 147.936063 -33.087889, 147.940554 -33.087889, 147.940554 -33.085643, 147.936063 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068227-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26578928
title: Additional file 1 of Pediatric patient engagement in clinical care, research and intervention development: a scoping review

description: Additional file 1. Search strategy.
DOI: 10.15468/dl.g2y576
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.153905 -33.085643, 148.153905 -33.087889, 148.158397 -33.087889, 148.158397 -33.085643, 148.153905 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068228-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.26578973
title: Additional file 1 of Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris)

description: Additional file 1: Table S1. Genes with low log2FoldChanges in the different data set comparisons.
DOI: 10.6084/m9.figshare.26578976
title: Additional file 2 of Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris)

description: Additional file 2: Table S2. Genes with consistent low log2FoldChanges in all data set comparisons.
DOI: 10.6084/m9.figshare.26578976.v1
title: Additional file 2 of Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris)

description: Additional file 2: Table S2. Genes with consistent low log2FoldChanges in all data set comparisons.
DOI: 10.6084/m9.figshare.26578979.v1
title: Additional file 3 of Evaluation of reference genes for transcript analyses in Komagataella phaffii (Pichia pastoris)

description: Additional file 3: Table S3. Ct_values_evaluation.
DOI: 10.15468/dl.w4u7dh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.598573 -33.087889, 148.603065 -33.087889, 148.603065 -33.085643, 148.598573 -33.085643, 148.598573 -33.087889)), ((148.598573 -33.087889, 148.596327 -33.087889, 148.596327 -33.090134, 148.598573 -33.090134, 148.598573 -33.087889)), ((148.603065 -33.087889, 148.603065 -33.090134, 148.605311 -33.090134, 148.605311 -33.087889, 148.603065 -33.087889)), ((148.605311 -33.090134, 148.605311 -33.094626, 148.607556 -33.094626, 148.607556 -33.090134, 148.605311 -33.090134)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068230-240626123714530/datasets/export for details.
DOI: 10.15468/dl.wc4jc4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.749042 -33.085643, 148.749042 -33.090134, 148.751288 -33.090134, 148.751288 -33.085643, 148.749042 -33.085643)), ((148.751288 -33.090134, 148.751288 -33.094626, 148.753533 -33.094626, 148.753533 -33.090134, 148.751288 -33.090134)))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068231-240626123714530/datasets/export for details.
DOI: 10.6084/m9.figshare.24902079
title: <b>The Genome of </b><b><i>Eleocharis vivipara</i></b><b> Elucidates the Genetics of C</b><sub><strong>3</strong></sub><b>-C</b><sub><strong>4</strong></sub><b> </b><b>Photosynthetic Plasticity</b><b> and Karyotype Evolution in the Cyperaceae</b>

description: <i>Eleocharis vivipara</i>, an amphibious sedge in the Cyperaceae family, has several remarkable properties, most notably its alternate use of C<sub>3</sub> photosynthesis underwater and C<sub>4</sub> photosynthesis on land. However, the absence of genomic data has hindered its utility for evolutionary and genetic research. Here, we present a high-quality genome for <i>E. vivipara</i>, representing the first chromosome-level genome for the <i>Eleocharis</i> genus, with an approximate size of 965.22 Mb mainly distributed across 10 chromosomes. Its Hi-C pattern, chromosome clustering results, and one-to-one genome synteny across two subgroups indicates a tetraploid structure with chromosome count 2<i>n</i> = 4<i>x</i> = 20. Phylogenetic analysis suggests that <i>E. vivipara </i>diverged from <i>Cyperus</i> <i>esculentus</i> approximately 32.96 million years ago (Mya), and underwent a whole genome duplication (WGD) about 3.5 Mya. Numerous fusion and fission events were identified between the chromosomes of<i> E. vivipara</i> and its close relatives. We demonstrate that <i>E. vivipara</i> has holocentromeres, a chromosomal feature which can maintain the stability of such chromosomal rearrangements. Experimental transplantation and cross-section studies showed its terrestrial culms developed C<sub>4</sub> Kranz anatomy with increased number of chloroplasts in the bundle sheath (BS) cells. Gene expression and weighted gene co-expression network analysis (WGCNA) showed overall elevated expression of core genes associated with C<sub>4</sub> pathway, and significant enrichment of genes related to modified culm anatomy and photosynthesis efficiency. We found evidence of mixed NAD-ME and PCK type C<sub>4</sub> photosynthesis in <i>E. vivipara</i>, and hypothesize that the evolution of C<sub>4</sub> photosynthesis predates the WGD event. The mixed type is dominated by subgenome A and supplemented by subgenome B. Collectively, our findings not only shed light on the evolution of <i>E. vivipara</i> and karyotype within the Cyperaceae family, but also provide valuable insights into the transition between C<sub>3</sub> and C<sub>4</sub> photosynthesis, offering promising avenues for crop improvement and breeding.
DOI: 10.6084/m9.figshare.24902079.v1
title: The Genome of Eleocharis vivipara Elucidates the Genetics of C3-C4 Photosynthetic Plasticity and Karyotype Evolution in the Cyperaceae.

description: Eleocharis vivipara, an amphibious plant in Cyperaceae family, was reported to have numerous valuable biological traits, particularly its adaptive photosynthesis plasticity that employing C3 type underwater and C4 type on land. However, the evolutionary and genetic studies of it have been hampered due to lack of genomes. Here we assembled a high-quality genome of E. vivipara, the first chromosome-level genome of Eleocharis genus, with its size ~965.22 Mb and contains 10 chromosomes. Its diagonal Hi-C pattern for adjacent chromosomes, and its 1-to-1 genome synteny relationship for two subgroups suggested it is a tetraploid with n = 2x = 10. Phylogeny result displayed the Eleocharis diverged with Cyperus genus ~23.11 Mya, a closer relationship than others in Cyperaceae. Interestingly, the well 1-to-1 genome synteny result for the subgenome 2 of E. vivipara (x = 5), the genomes of Cyperus esculentus (n = 54) and Rhynchospora tenuis (n = 2), displayed twice chromosomes fusion events resulted to their number reduction from 54 to 5 and then to 2. Compared with its close relative Juncus effusus which has monocentromeres, we found E. vivipara showed characteristics of holocentromeres that can maintain the stability of its fusion chromosomes. Strikingly, transplanting experiment displayed its culms anatomy gradually presented Proto-Kranz structure with increased number of chloroplasts in BS cells in terrestrial culms. Further comparison results not only displayed most of its C4 photosynthesis related genes showed higher expression, but also identified 2,602 up-DEGs that mainly functional in response to water deprivation and ABA, revealed the drought inducted transition of C4 photosynthesis in E. vivipara. Briefly, our results not only shed light on the karyotype evolution of Cyperaceae, but also provided new valuable insights into C3 and C4 transformation that will benefit for crop improvement and breeding.
DOI: 10.6084/m9.figshare.26578991
title: Additional file 3 of Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

description: Additional file 3: Table S3. CAZy family gene expressions data of Citrobacter freundii so4, Sphingobacterium paramultivorum w15 and Coniochaeta sp. 2T2.1 at different shaking speed over time.
DOI: 10.6084/m9.figshare.26578985
title: Additional file 1 of Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

description: Additional file 1: Table S1. Transcriptomic raw data (libraries names and raw counts in each library).
DOI: 10.15468/dl.3apdmy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.921968 -33.085643, 148.921968 -33.087889, 148.92646 -33.087889, 148.92646 -33.085643, 148.921968 -33.085643))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068232-240626123714530/datasets/export for details.
DOI: 10.15468/dl.aef33r
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.621031 -33.087889, 148.621031 -33.094626, 148.630014 -33.094626, 148.630014 -33.090134, 148.625523 -33.090134, 148.625523 -33.087889, 148.621031 -33.087889)), ((148.630014 -33.094626, 148.630014 -33.096872, 148.634506 -33.096872, 148.634506 -33.094626, 148.630014 -33.094626)))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068233-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju9pf9
title: Occurrence Download

description: A dataset containing 6664 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Macaca mulatta (Zimmermann, 1780)"
 ]
}

 The dataset includes 6664 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068235-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jjdavj
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((148.850103 -33.087889, 148.852349 -33.087889, 148.852349 -33.085643, 148.850103 -33.085643, 148.850103 -33.087889)), ((148.850103 -33.087889, 148.843365 -33.087889, 148.843365 -33.094626, 148.845611 -33.094626, 148.845611 -33.096872, 148.852349 -33.096872, 148.852349 -33.094626, 148.850103 -33.094626, 148.850103 -33.087889)))"
 ]
}

 The dataset includes 158 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068236-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26578985.v1
title: Additional file 1 of Functioning of a tripartite lignocellulolytic microbial consortium cultivated under two shaking conditions: a metatranscriptomic study

description: Additional file 1: Table S1. Transcriptomic raw data (libraries names and raw counts in each library).
DOI: 10.15468/dl.yy4863
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.895019 -33.087889, 148.895019 -33.090134, 148.897265 -33.090134, 148.897265 -33.094626, 148.904002 -33.094626, 148.904002 -33.090134, 148.901756 -33.090134, 148.901756 -33.087889, 148.895019 -33.087889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068237-240626123714530/datasets/export for details.
DOI: 10.15468/dl.dg2rnj
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.801315 -33.087889, 147.805806 -33.087889, 147.805806 -33.074414, 147.801315 -33.074414, 147.801315 -33.087889)), ((147.801315 -33.087889, 147.799069 -33.087889, 147.799069 -33.090134, 147.794577 -33.090134, 147.794577 -33.09238, 147.799069 -33.09238, 147.799069 -33.094626, 147.801315 -33.094626, 147.801315 -33.087889)))"
 ]
}

 The dataset includes 68 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068238-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p62ene
title: Occurrence Download

description: A dataset containing 506665 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Acer campestre L."
 ]
}

 The dataset includes 506665 records from 2664 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068234-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.djtt4a
title: Occurrence Download

description: A dataset listing the 26177 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "PublishingOrg is 64ee55c9-570a-42af-b7da-3f13c6b4e5a9"
 ]
}

 The dataset's 26177 records were derived from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008741-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15168356
title: Datasets for modeling Brazilian solar energy potential using different cloud cover sources (1983-2009)

description: Article Data and Scripts

author: Emerson D. Oliveiradate: 2025/04/07

File DescriptionAll data used to generate the results in the article "Assessment of employing different cloud cover data sources to model the Brazilian solar energy potentiality" are organized in the following folders:



annual_datasets: Contains annual averages of Brazilian photovoltaic potential (e.g., data for Figure 9 in annual_datasets/FIGURES/Fig9).  

seasonal_datasets: Seasonal data (by meteorological season).  


Processing and visualization scripts are available in the FIGURES subdirectories.

Computational Methods



Pre-processingInterpolation and ensemble techniques were performed using Climate Data Operator (CDO), automated via shell scripts (.sh).

Visualization- Plots generated primarily in R (using packages like ggplot2, raster).  - Exception: Figure 2 was created with GrADS.


Usage LicenseThe files may be freely used, provided the original authors are properly cited (as per Zenodo guidelines).  

Contact  Email: emerson.oliveira@univasf.edu.br
DOI: 10.5281/zenodo.15168357
title: Datasets for modeling Brazilian solar energy potential using different cloud cover sources (1983-2009)

description: Article Data and Scripts

author: Emerson D. Oliveiradate: 2025/04/07

File DescriptionAll data used to generate the results in the article "Assessment of employing different cloud cover data sources to model the Brazilian solar energy potentiality" are organized in the following folders:



annual_datasets: Contains annual averages of Brazilian photovoltaic potential (e.g., data for Figure 9 in annual_datasets/FIGURES/Fig9).  

seasonal_datasets: Seasonal data (by meteorological season).  


Processing and visualization scripts are available in the FIGURES subdirectories.

Computational Methods



Pre-processingInterpolation and ensemble techniques were performed using Climate Data Operator (CDO), automated via shell scripts (.sh).

Visualization- Plots generated primarily in R (using packages like ggplot2, raster).  - Exception: Figure 2 was created with GrADS.


Usage LicenseThe files may be freely used, provided the original authors are properly cited (as per Zenodo guidelines).  

Contact  Email: emerson.oliveira@univasf.edu.br
DOI: 10.15468/dl.qn57az
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "DatasetKey is Museum of Comparative Zoology, Harvard University",
 "License is one of (CC-BY 4.0, CC0 1.0, CC-BY-NC 4.0)",
 "TaxonKey is Hedylidae"
 ]
}

 The dataset includes 22 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008744-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bpfph
title: Occurrence Download

description: A dataset containing 736 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dynastes hercules (Linnaeus, 1758)"
 ]
}

 The dataset includes 736 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0254290-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghxaqh
title: Occurrence Download

description: A dataset containing 402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "TaxonKey is Abies pinsapo Boiss."
 ]
}

 The dataset includes 402 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0236157-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zpp7we
title: Occurrence Download

description: A dataset containing 951 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((-74.64081 41.85174,-74.59778 41.85174,-74.59778 41.86035,-74.64081 41.86035,-74.64081 41.85174))",
 "Geometry POLYGON((-81.77406 39.14279,-71.18254 39.14279,-71.18254 45.75483,-81.77406 45.75483,-81.77406 39.14279))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Myotis lucifugus (Le Conte, 1831)",
 "Year 1967-2023"
 ]
}

 The dataset includes 951 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0241450-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.