cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/ztmev-kx025
title: wt_serum_blotfrombehind

description: This is a sample of wt grown in serum bottle that made nanowires.
description: <strong>Tilt Series Date:</strong> 2015-07-26</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand</p>
<strong>Sample Preparation:</strong> The sample was put on the C side (glow discharged side) on the left. The blotting was done from behind on the rt side. Vitrobot was used. All other vitrobot conditions are the same.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-26-36/rawdata/</p>10037.mrc,  Tilt Series (Pixel Size 0.48 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-26-36/rawdata/10037.mrc"
        > <i class="download icon"></i> Download </a></p>

        10037_part61_4.rec,  Reconstruction (Pixel Size 1.92 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-07-26-36/3dimage_59624/10037_part61_4.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29609603
title: ML for anomalous diffusion model

description: <b>ML for anomalous diffusion model</b>Dapeng Wang7.24.2025This repository contains the necessary codes written in Python 3 to train the classifiers.<b>1. Required modules</b>1. numpy, pandas, scipy, scikit-learn, matplotlib and seaborn for basic scientific computing / data processing.2. hmmlearn for trajectory / diffusion feature extraction.3. tqdm and natsort for progress bar / file traversal.4. joblib for storing the classifiers.<b>Usage</b>1.Download the whole repository and extract it in a directory of your choice.2.Use the Trajs_simulation_with_noise.nb file to generate training data.3.Use the features_zyh_ATTM.py, features_zyh_BW.py, features_zyh_CTRW.py, features_zyh_FBM.py, features_zyh_LW.py, and features_zyh_SBM.py to compute the most discriminative feature vectors for each diffusion model to support subsequent classifier training and prediction.4.Use the findhypara_step2.py file to use RandomizedSearchCV for hyperparameter tuning of a RandomForestClassifier and save the results to a JSON file.5.Use the model_step3.py file to perform classification prediction using a RandomForestClassifier.6.Use the features_exp_step4.py files to load trajectory data, calculate features for each trajectory, and save the results as a CSV file.7.Use the model_predict_step5.py code to load a pre-trained machine learning model, make predictions on feature data, analyze prediction results, and save outputs as CSV files.
DOI: 10.6084/m9.figshare.29609603.v1
title: ML for anomalous diffusion model

description: <b>ML for anomalous diffusion model</b>Dapeng Wang7.24.2025This repository contains the necessary codes written in Python 3 to train the classifiers.<b>1. Required modules</b>1. numpy, pandas, scipy, scikit-learn, matplotlib and seaborn for basic scientific computing / data processing.2. hmmlearn for trajectory / diffusion feature extraction.3. tqdm and natsort for progress bar / file traversal.4. joblib for storing the classifiers.<b>Usage</b>1.Download the whole repository and extract it in a directory of your choice.2.Use the Trajs_simulation_with_noise.nb file to generate training data.3.Use the features_zyh_ATTM.py, features_zyh_BW.py, features_zyh_CTRW.py, features_zyh_FBM.py, features_zyh_LW.py, and features_zyh_SBM.py to compute the most discriminative feature vectors for each diffusion model to support subsequent classifier training and prediction.4.Use the findhypara_step2.py file to use RandomizedSearchCV for hyperparameter tuning of a RandomForestClassifier and save the results to a JSON file.5.Use the model_step3.py file to perform classification prediction using a RandomForestClassifier.6.Use the features_exp_step4.py files to load trajectory data, calculate features for each trajectory, and save the results as a CSV file.7.Use the model_predict_step5.py code to load a pre-trained machine learning model, make predictions on feature data, analyze prediction results, and save outputs as CSV files.
DOI: 10.22002/cqzmw-zkw94
title: nanochemowt

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-02</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -7.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 16h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-38/rawdata/</p>nanochemo_atlas10046.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-38/rawdata/nanochemo_atlas10046.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemo_atlas10046_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-02-38/3dimage_57819/nanochemo_atlas10046_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/667ne-z0z51
title: Vibrio cholerae delta TcpB

description: Raw data files of Vibrio cholerae delta TcpB
description: <strong>Tilt Series Date:</strong> 2015-10-16</p>
<strong>Data Taken By:</strong> Andreas Kjaer</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
<strong>Collaborators and Roles:</strong> Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown ON in LB with ampicillin and IPTG, refreshed in LB shortly prior to freezing.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aka2015-10-16-48/3dimage_73363/</p>10162015_TcpB_10049_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 7.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aka2015-10-16-48/3dimage_73363/10162015_TcpB_10049_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        10162015_TcpB_10049.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aka2015-10-16-48/rawdata/10162015_TcpB_10049.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/635j8-twz31
title: Mtr_recons_in_liposome

description: Final liposome conc: 2 mg/ml, grid # - PS123 - 2, ref pg 63 in notebook for details
description: <strong>Tilt Series Date:</strong> 2015-12-12</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-50.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 65.0 eV/Å²,  defocus: -5.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Sahand and Moh, USC</p>
<strong>Sample Preparation:</strong> vitrobot freezing conditions 6, 3- ref pg 63</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-12-12-8/3dimage_71412/</p>atlas1_sq40011_part111_1.rec,  Reconstruction (Pixel Size 1.28 nm), 356.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-12-12-8/3dimage_71412/atlas1_sq40011_part111_1.rec"
        > <i class="download icon"></i> Download </a></p>

        atlas1_sq40011.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.2 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-12-12-8/rawdata/atlas1_sq40011.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/tnef4-yym31
title: perfusiondcrp_fixd

description: The sample was grown in perfusion chamber and fixed for 15 minutes with 2.5% glutaraldehyde. Then washed 3 times in distilled water for 1 minute each. The sample was blotted in a manual plunger with 1.5ul gold beads.
description: <strong>Tilt Series Date:</strong> 2015-08-26</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Lm is taken before and after fixing. In the LM after fixing the nanowires were just like the ones before fixing. Long nanowires were present and the correlation was very good.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-26-7/3dimage_60685/</p>sq14_atlas0004.rec,  Reconstruction (Pixel Size 1.56 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-26-7/3dimage_60685/sq14_atlas0004.rec"
        > <i class="download icon"></i> Download </a></p>

        sq14_atlas0004.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-08-26-7/rawdata/sq14_atlas0004.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/pvb85-z1209
title: pED208_pilated

description: E coli strain with plasmid pED208 overexpresses T4SS and F-like pili
description: <strong>Tilt Series Date:</strong> 2015-01-14</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Cells were obtained from Laura Frost</p>
<strong>Purification / Growth Conditions / Treatment:</strong> o/n liquid LB</p>
<strong>Sample Preparation:</strong> Vitrobot</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-93/rawdata/</p>pED208b0039.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-93/rawdata/pED208b0039.mrc"
        > <i class="download icon"></i> Download </a></p>

        pED208b0039_full.rec,  Reconstruction (Pixel Size 2.0 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2015-01-14-93/3dimage_50758/pED208b0039_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/m9vn6-m6h85
title: PW3654

description: Pseudomonas aeruginosa, strain PW3654.Acquired from the Transposon mutant collection. PW3654- lacZwp06q3 (CheW of F6 system)
description: <strong>Tilt Series Date:</strong> 2015-02-23</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: 10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Streak on LB plates and incubate overnight at 37°C- Inoculate 5 mL MOPS Minimal Media Limited Nitrogen from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-23-44/rawdata/</p>PseudomonasdeltaFF6CheWNEWFEB0001.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-23-44/rawdata/PseudomonasdeltaFF6CheWNEWFEB0001.mrc"
        > <i class="download icon"></i> Download </a></p>

        PseudomonasdeltaFF6CheWNEWFEB0001_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-02-23-44/3dimage_52269/PseudomonasdeltaFF6CheWNEWFEB0001_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sz7ae-re127
title: Vibrio cholerae

description: Raw data files of Vibrio cholerae
description: <strong>Tilt Series Date:</strong> 2015-10-01</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> PM22, lacZ- Δvc1397 Δvc1402</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Simon Ringgaard</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Briegel, A., Ortega, D. R., Mann, P., Kjaer, A., Ringgaard, S. and Jensen, G. J. (2016). Chemotaxis cluster 1 proteins form cytoplasmic arrays in Vibrio cholerae and are stabilized by a double signaling domain receptor DosM. Proc Natl Acad Sci U S A 113, 10412-10417.</p>
description: Files available via S3 at s://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-24/3dimage_69779/</p>PM22deltaCheA1trippleW0026_full.rec,  Reconstruction (Pixel Size 1.28 nm), 712.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-24/3dimage_69779/PM22deltaCheA1trippleW0026_full.rec"
        > <i class="download icon"></i> Download </a></p>

        PM22deltaCheA1trippleW0026.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-10-01-24/rawdata/PM22deltaCheA1trippleW0026.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/mxt9f-hjv45
title: WT LP01 from Liu lab, Yale

description: Type four secretion system, T4SS
description: <strong>Tilt Series Date:</strong> 2016-11-28</p>
<strong>Data Taken By:</strong> Yuxi Liu</p>
<strong>Species / Specimen:</strong> Legionella pneumophila</p>
<strong>Strain:</strong> Philadelphia-1_Lp02</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-51.0°, 51.0°), step: 3°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: -5.0 μm,  magnification: 15500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
<strong>Collaborators and Roles:</strong> Data collected by Bo Hu in Jun Liu lab at Yale from their Polara. Partial WT strain data set. Primary literature:  doi: 10.1038/s41564-018-0165-z</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-112/rawdata/</p>LP02May18B037_driftcorr.mrc,  Tilt Series (Pixel Size 0.25 nm), 2.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-112/rawdata/LP02May18B037_driftcorr.mrc"
        > <i class="download icon"></i> Download </a></p>

        LP02May18B037_driftcorr.rec,  Reconstruction (Pixel Size 1.0 nm), 2.3 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ylx2016-11-28-112/3dimage_104899/LP02May18B037_driftcorr.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ahgmh-qsf18
title: Adipocyte Cell

description: FGF21Dose-symmetrical dose scheme
description: <strong>Tilt Series Date:</strong> 2017-11-30</p>
<strong>Data Taken By:</strong> Stephen Carter</p>
<strong>Species / Specimen:</strong> Primary adipocyte cells</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -10.0 μm,  magnification: 50000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> SerialEM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Collaborators and Roles:</strong> Roger Kornberg and Maia</p>
<strong>Purification / Growth Conditions / Treatment:</strong> https://elifesciences.org/articles/43146#s4</p>
<strong>Sample Preparation:</strong> https://elifesciences.org/articles/43146#s4</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-11-30-28/rawdata/</p>tilt_series_21_sorted_orig.mrc,  Tilt Series (Pixel Size 2.241 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-11-30-28/rawdata/tilt_series_21_sorted_orig.mrc"
        > <i class="download icon"></i> Download </a></p>

        tilt_series_21_sorted_orig_full.rec,  Reconstruction (Pixel Size 8.964 nm), 890.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scd2017-11-30-28/3dimage_117271/tilt_series_21_sorted_orig_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/4r25e-2r560
title: nanochemowt_2ndday

description: This is my fourth attempt to grow Shewanella. This culture is wt grown at caltech in chemostat.Frozen here in vitrobot.
description: <strong>Tilt Series Date:</strong> 2015-06-06</p>
<strong>Data Taken By:</strong> Poorna Subramanian</p>
<strong>Species / Specimen:</strong> Shewanella oneidensis</p>
<strong>Strain:</strong> MR-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Moh and Sahand USC</p>
<strong>Sample Preparation:</strong> This sample was frozen after being in oxygen deficiency for 40h. Checked by SEM and had nanowires. Vitrobot freezing conditions 6s blot force, 3s blot time, 1s drain time, 4ul on grid.</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-57/rawdata/</p>nanochemowt2day_atlas30017.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-57/rawdata/nanochemowt2day_atlas30017.mrc"
        > <i class="download icon"></i> Download </a></p>

        nanochemowt2day_atlas30017_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/psa2015-06-06-57/3dimage_58182/nanochemowt2day_atlas30017_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wzrph2
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prunus pensylvanica",
 "Country is Sweden",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002442-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16974886
title: Sampled structural ensembles of tp-CP12 by restrained-ensemble MD simulations that fit with both SAXS and SDSL-EPR experimental data

description: Sampled structural ensembles of tp-CP12 homodimer by 1.5 ns restrained-ensemble MD simulations that fit with both SAXS and SDSL-EPR experimental data.  A README file with the contents of the dataset is included.
DOI: 10.5281/zenodo.15117282
title: Sampled structural ensembles of tp-CP12 by restrained-ensemble MD simulations that fit with both SAXS and SDSL-EPR experimental data

description: Sampled structural ensembles of tp-CP12 homodimer by 1.5 ns restrained-ensemble MD simulations that fit with both SAXS and SDSL-EPR experimental data.  A README file with the contents of the dataset is included.