cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11347406
title: Koutsidi, Moukas, Tzanatos: 23 biological traits of 235 species

description: This file contains traits data for 235 Mediterranean nekton species. There are data on 23 traits; the data are presented in a continuous, range (minimum & maximum) or a categorical form. In the latter case, for each trait, 2-6 trait categories/modalities exist and each species has been assigned to only one modality per trait. <br>The Excel file has 6 worksheets: (1) <b>Continuous&range_235species</b>: This worksheet contains information on the continuous traits (longevity, age-at-maturity, fecundity, maximum length, trophic level, optimal depth, optimal temperature). For traits of the range type (fecundity, depth, trophic level and temperature) the mean value is provided together with the other traits. To the right of the table the minimum and maximum of range type traits by species is presented. All 235 species, even with incomplete information (NA) on all continuous traits are presented.<br>(2) <b>Continuous&range_205species</b>: This worksheet contains information on the continuous traits (longevity, age-at-maturity, fecundity, maximum length, trophic level, optimal depth, optimal temperature). For traits of the range type (fecundity, depth, trophic level and temperature) the mean value is provided together with the other traits. To the right of the table the minimum and maximum of range type traits by species is presented. Only the species with complete information (205 species) on continuous traits are presented (however, some NAs can still be found in the case of minimum or maximum if only the mean or the maximum value of the trait has been documented).<br><br>(3) <b>Categorical_23traits_235species</b>: This worksheet is a presence/absence (1/0) matrix of 235 species by 23 traits using 81 trait categories (or modalities). All species, even with incomplete information (NA) on all 23 traits are presented.<br> (4) <b>Categorical_23traits_205species</b>: This worksheet is a presence/absence (1/0) matrix of 205 species by 23 traits using 81 trait categories (or modalities). For each trait only one modality is scored with a presence. Only the species with complete information (205 species) on all 23 traits are presented. <br> (5) <b>reference_codes_per_trait</b>: This worksheet is a matrix of the 235 species by 23 traits with one or more numbers representing a reference from which the information to fill in the trait information as data (shown in the previous worksheets) was taken.<br> (6) <b>reference_list</b>: This worksheet is a list of reference numbers and the corresponding full references.<br>
DOI: 10.6084/m9.figshare.11347436.v1
title: data and R script

description: Data in "txt" format and R script<br>Scientific Reports 2020
DOI: 10.25375/uct.11347475.v1
title: Contrasting parental color-morphs increase regularity of prey deliveries in an African raptor: Data

description: The paper based on this dataset has been published in Behavioral Ecology with the title "Contrasting parental color-morphs increase regularity of prey deliveries in an African raptor"<br>Abstract: Disassortative mating in color-polymorphic raptors is a proposed mechanism for the maintenance of color polymorphism in populations. Selection for such a mating system may occur if there are fitness advantages of mating with a contrasting morph. In the black sparrowhawk (Accipiter melanoleucus), mixed-morph pairs may have a selective advantage, since they produce offspring which have higher survival rates. Two hypotheses, which may explain the mechanism, are the 'avoidance-image' and 'complementarity' hypotheses: The first suggests that within a predator's territory, prey develop a search-image for the more commonly encountered parental morph, for example, the male morph during incubation and brooding. Females of a contrasting morph to their partner would then have higher capture rates once they commence hunting in the later nestling phase. Thus, the avoidance-image hypothesis predicts higher provisioning rates for mixed-morph pairs. Alternatively, the 'complementarity' hypothesis posits that different color morphs exploit different environmental conditions, allowing mixed-morph pairs to hunt under a wider range of conditions and predicts that food is delivered more consistently. We test these hypotheses using nest cameras to record prey delivery rates during the late nestling phase when both parents are foraging. We found support for the 'complementarity' hypothesis, with mixed-morph pairs delivering food more consistently, but not at a higher rate. The higher consistency in prey deliveries may explain the improved survival of the offspring of mixed-morph pairs, and therefore play a role in maintaining the stability of color-polymorphism in this system.<br>
DOI: 10.6084/m9.figshare.11347247
title: EEG alpha activity in response to Transcutaneous Electrical Nervous Stimulation in healthy young subjects and in the healthy elderly subjects

description: Transcutaneous Electrical Nerve Stimulation (TENS) is used not only in the treatment of pain but also in the examination of sensory functions. With aging, there is decreased sensitivity to somatosensory stimuli. It is essential to examine the effect of TENS application on the sensory functions in the brain by recording the spontaneous EEG activity and the effect of aging on the sensory functions of the brain during the application. The present study aimed to investigate the effect of the application of TENS on the brain’s electrical activity and the effect of aging on the sensory functions of the brain during application of TENS. 15 young and 14 elderly subjects were included in the study. Spontaneous EEG was recorded from 32 channels during TENS application. Power spectrum analysis was performed by Fast Fourier Transform (FFT) in the alpha frequency band (8-13 Hz) for all subjects. The study was approved by The Non-Interventional Clinical Research Ethics Committee of Istanbul Medipol University (Ethical report no: 10840098-604.01.01-E.6805). All participants signed an informed consent form.
DOI: 10.6084/m9.figshare.11347151
title: Supplementary Material for: Validation of a Risk Equation Predicting Hemodialysis Arteriovenous Fistula Primary Failure in Elderly

description: <b><i>Background:</i></b> Choice of vascular access for older hemodialysis patients presents a special challenge since the rate of arteriovenous fistula (AVF) primary failure is high. The Lok’s risk equation predicting AVF primary failure has achieved good prediction accuracy and holds great potential for clinical use, but it has not been validated in the United States older hemodialysis patients. <b><i>Methods:</i></b> We assembled a validation data set of 14,892 patients aged 67 years and older who initiated hemodialysis with a central venous catheter between July 1, 2010, and June 30, 2012, and had a subsequent, incident AVF placement from the United States Renal Data System. We examined the external validity of Lok’s model by applying it to this validation data set. The discriminatory accuracy and calibration were evaluated by the concordance index (C-statistics) and calibration plot, respectively. <b><i>Results:</i></b> The observed frequency of AVF primary failure varied from 0.45 to 0.53 in hemodialysis patients in the validation data set. The predicted probabilities of AVF primary failure calculated by using the Lok’s risk equation ranged from 0.08 to 0.61, and 77.8, 40.5, and 51.7% of patients were categorized as having high, intermediate, and low risk of AVF primary failure, respectively. The C-statistics of the Lok’s risk equation in the validation data set was 0.53 (95% CI 0.52–0.54). The predicted probabilities of AVF primary failure corresponded poorly with the observed proportions in the calibration plot. <b><i>Conclusions:</i></b> When externally applied to a cohort of U.S. older hemodialysis patients, the Lok’s risk equation exhibited poor discrimination and calibration accuracy. It is invalid to use it to predict AVF primary failure. A more complex model with strong predictors is expected to better serve clinical determination for AVF placement in this population.
DOI: 10.6084/m9.figshare.11347151.v1
title: Supplementary Material for: Validation of a Risk Equation Predicting Hemodialysis Arteriovenous Fistula Primary Failure in Elderly

description: <b><i>Background:</i></b> Choice of vascular access for older hemodialysis patients presents a special challenge since the rate of arteriovenous fistula (AVF) primary failure is high. The Lok’s risk equation predicting AVF primary failure has achieved good prediction accuracy and holds great potential for clinical use, but it has not been validated in the United States older hemodialysis patients. <b><i>Methods:</i></b> We assembled a validation data set of 14,892 patients aged 67 years and older who initiated hemodialysis with a central venous catheter between July 1, 2010, and June 30, 2012, and had a subsequent, incident AVF placement from the United States Renal Data System. We examined the external validity of Lok’s model by applying it to this validation data set. The discriminatory accuracy and calibration were evaluated by the concordance index (C-statistics) and calibration plot, respectively. <b><i>Results:</i></b> The observed frequency of AVF primary failure varied from 0.45 to 0.53 in hemodialysis patients in the validation data set. The predicted probabilities of AVF primary failure calculated by using the Lok’s risk equation ranged from 0.08 to 0.61, and 77.8, 40.5, and 51.7% of patients were categorized as having high, intermediate, and low risk of AVF primary failure, respectively. The C-statistics of the Lok’s risk equation in the validation data set was 0.53 (95% CI 0.52–0.54). The predicted probabilities of AVF primary failure corresponded poorly with the observed proportions in the calibration plot. <b><i>Conclusions:</i></b> When externally applied to a cohort of U.S. older hemodialysis patients, the Lok’s risk equation exhibited poor discrimination and calibration accuracy. It is invalid to use it to predict AVF primary failure. A more complex model with strong predictors is expected to better serve clinical determination for AVF placement in this population.
DOI: 10.6084/m9.figshare.11347025
title: Table 9_Lysosomal Protein List

description: Lysosomal protein list created by combination of a manually curated bonafide list from the literature and list retrieved from the panther gene ontology database (http://www.pantherdb.org/) and uniprot database (https://www.uniprot.org/) for mouse.
DOI: 10.6084/m9.figshare.11347031
title: processed_R2478.h5

description: Preprocessed wavelet transformed signal for R2478, experiment duration roughly 40 minutes, electrophysiological data recorded with openEphys
DOI: 10.6084/m9.figshare.11347013
title: Anketa: Upravljanje podacima u INN "Vinča"

description: Anketa koja je rađena u periodu od 25.11. do 6.12.2019. među istraživačima Instituta za nuklearne nauke "Vinča".<br>Cilj je bio da se bolje razumeju navike istraživača kada je u pitanju upravljanje istraživačkim podacima.<br>Ovde se nalaze primer upitnika (PDF) i rezultati istraživanja (CSV).
DOI: 10.6084/m9.figshare.11347031.v1
title: processed_R2478.h5

description: Preprocessed wavelet transformed signal for R2478, experiment duration roughly 40 minutes, electrophysiological data recorded with openEphys
DOI: 10.6084/m9.figshare.11347031.v3
title: processed_R2478.h5

description: Preprocessed wavelet transformed signal for R2478, experiment duration roughly 40 minutes, electrophysiological data recorded with openEphys
DOI: 10.6084/m9.figshare.11347013.v1
title: Anketa: Upravljanje podacima u INN "Vinča"

description: Anketa koja je rađena u periodu od 25.11. do 6.12.2019. među istraživačima Instituta za nuklearne nauke "Vinča".<br>Cilj je bio da se bolje razumeju navike istraživača kada je u pitanju upravljanje istraživačkim podacima.<br>Ovde se nalaze primer upitnika (PDF) i rezultati istraživanja (CSV).
DOI: 10.6084/m9.figshare.11347031.v2
title: processed_R2478.h5

description: Preprocessed wavelet transformed signal for R2478, experiment duration roughly 40 minutes, electrophysiological data recorded with openEphys
DOI: 10.6084/m9.figshare.11346968
title: supplementary _tables

description: supplementary _tables
DOI: 10.6084/m9.figshare.11346887
title: Origin graphs.rar

description: Silver nano particle based sensor for heavy metal ion detection
DOI: 10.6084/m9.figshare.11346890
title: Supplementary Material for: Utility of Genomic Testing after Renal Biopsy

description: <b><i>Background:</i></b> Renal biopsy is the mainstay of renal pathological diagnosis. Despite sophisticated diagnostic techniques, it is not always possible to make a precise pathological diagnosis. Our aim was to identify a genetic cause of disease in patients who had undergone renal biopsy and determine if genetic testing altered diagnosis or treatment. <b><i>Methods:</i></b> Patients with suspected familial kidney disease underwent a variety of next-generation sequencing (NGS) strategies. The subset of these patients who had also undergone native kidney biopsy was identified. Histological specimens were reviewed by a consultant pathologist, and genetic and pathological diagnoses were compared. <b><i>Results:</i></b> Seventy-five patients in 47 families underwent genetic sequencing and renal biopsy. Patients were grouped into 5 diagnostic categories based on pathological diagnosis: tubulointerstitial kidney disease (TIKD; <i>n</i> = 18); glomerulonephritis (GN; <i>n</i> = 15); focal segmental glomerulosclerosis and Alport Syndrome (<i>n</i> = 11); thrombotic microangiopathy (TMA; <i>n</i> = 17); and nonspecific pathological changes (<i>n</i> = 14). Thirty-nine patients (52%) in 21 families (45%) received a genetic diagnosis; 13 cases (72%) with TIKD, 4 (27%) with GN, 6 (55%) with focal segmental glomerulosclerosis/Alport syndrome, and 10 (59%) with TMA and 6 cases (43%) with nonspecific features. Genetic testing resulted in changes in understanding of disease mechanism in 21 individuals (54%) in 12 families (57%). Treatment would have been altered in at least 26% of cases (10/39). <b><i>Conclusions:</i></b> An accurate genetic diagnosis can result in changes in clinical diagnosis, understanding of pathological mechanism, and treatment. NGS should be considered as a complementary diagnostic technique to kidney biopsy in the evaluation of patients with kidney disease.
DOI: 10.6084/m9.figshare.11346893
title: Arabidopsis_2029_Maf001_NoFilter

description: Arabidopsis_2029_Maf001_NoFilter
DOI: 10.6084/m9.figshare.11346887.v1
title: Origin graphs.rar

description: Silver nano particle based sensor for heavy metal ion detection
DOI: 10.21954/ou.rd.11346848
title: Citation Knowledge with Section and Context

description: This dataset contains information from scientific publications written by authors who have published papers in the RecSys conference. It contains four files which have information extracted from scientific publications. The details of each file are explained below:<br>i) all_authors.tsv: This file contains the details of authors who published research papers in the RecSys conference. The details include authors' identifier in various forms, such as number, orcid id, dblp url, dblp key and google scholar url, authors' first name, last name and their affiliation (where they work)<br>ii) all_publications.tsv: This file contains the details of publications authored by the authors mentioned in the all_authors.tsv file (Please note the list of publications does not contain all the authored publications of the authors, refer to the publication for further details).<br>The details include publications' identifier in different forms (such as number, dblp key, dblp url, dblp key, google scholar url), title, filtered title, published date, published conference and paper abstract.<br>iii) selected_author_publications-information.tsv: This file consists of identifiers of authors and their publications. Here, we provide the information of selected authors and their publications used for our experiment.<br>iv) selected_publication_citations-information.tsv: This file contains the information of the selected publications which consists of both citing and cited papers’ information used in our experiment. It consists of identifier of citing paper, identifier of cited paper, citation title, citation filtered title, the sentence before the citation is mentioned, citing sentence, the sentence after the citation is mentioned, citation position (section).<br>Please note, it does not contain information of all the citations cited in the publications. For more detail, please refer to the paper.<br>This dataset is for the use of research purposes only and if you use this dataset, please cite our paper "<i>Capturing and exploiting citation knowledge for recommending recently published papers</i>" due to be published in Web2Touch track 2020 (not yet published).<br>
DOI: 10.6084/m9.figshare.11346845
title: PARAMETERS OF A RELIABILITY TEST SYSTEM USED FOR ELECTRICITY-GAS INTEGRATED ENERGY SYSTEM RELIABILITY EVALUATION

description: PARAMETERS OF A RELIABILITY TEST SYSTEM USED FOR ELECTRICITY-GAS INTEGRATED ENERGY SYSTEM RELIABILITY EVALUATION<br>
DOI: 10.21954/ou.rd.11346848.v1
title: Citation Knowledge with Section and Context

description: This dataset contains information from scientific publications written by authors who have published papers in the RecSys conference. It contains four files which have information extracted from scientific publications. The details of each file are explained below:<br>i) all_authors.tsv: This file contains the details of authors who published research papers in the RecSys conference. The details include authors' identifier in various forms, such as number, orcid id, dblp url, dblp key and google scholar url, authors' first name, last name and their affiliation (where they work)<br>ii) all_publications.tsv: This file contains the details of publications authored by the authors mentioned in the all_authors.tsv file (Please note the list of publications does not contain all the authored publications of the authors, refer to the publication for further details).<br>The details include publications' identifier in different forms (such as number, dblp key, dblp url, dblp key, google scholar url), title, filtered title, published date, published conference and paper abstract.<br>iii) selected_author_publications-information.tsv: This file consists of identifiers of authors and their publications. Here, we provide the information of selected authors and their publications used for our experiment.<br>iv) selected_publication_citations-information.tsv: This file contains the information of the selected publications which consists of both citing and cited papers’ information used in our experiment. It consists of identifier of citing paper, identifier of cited paper, citation title, citation filtered title, the sentence before the citation is mentioned, citing sentence, the sentence after the citation is mentioned, citation position (section).<br>Please note, it does not contain information of all the citations cited in the publications. For more detail, please refer to the paper.<br>This dataset is for the use of research purposes only and if you use this dataset, please cite our paper "<i>Capturing and exploiting citation knowledge for recommending recently published papers</i>" due to be published in Web2Touch track 2020 (not yet published).<br>
DOI: 10.6084/m9.figshare.11346836
title: Supplementary Material for: Clinical Findings and Follow-Up of 46,XY and 45,X/46,XY Testicular Dysgenesis

description: Historically, the terms partial (PGD) and mixed gonadal dysgenesis (MGD) have been used to describe incomplete testicular differentiation in individuals with 46,XY or 45,X/46,XY karyotypes, respectively. However, it is currently unclear to what extent clinical features actually differ between these individuals. The aim of this study was to compare clinical, laboratory, and histological findings in these 2 groups. Patients with testicular dysgenesis seen in our service between 1989 and 2013 were selected. Sixty-one patients met the inclusion criteria. Individuals with 46,XY and 45,X/46,XY karyotypes were compared regarding genital features, gonadal histology and function, growth, and associated conditions. Twenty-five had mosaicism with a 45,X cell line (MGD), while a 46,XY karyotype (PGD) was found in 36 cases belonging to 32 families. Mutations in <i>NR5A1</i>, <i>WT1</i>, and <i>SRY</i> genes associated with testicular dysgenesis were found in 12 families. There were no significant differences regarding parental consanguinity, degree of external androgenization, gonadal location, histology, and function, and associated conditions. However, in the MGD group, the presence of a uterus, lower birth weight and length, and short stature were more often observed. Therefore, the use of histological features to classify PDG and MGD should be abandoned and replaced by classification based on karyotype.
DOI: 10.6084/m9.figshare.11346836.v1
title: Supplementary Material for: Clinical Findings and Follow-Up of 46,XY and 45,X/46,XY Testicular Dysgenesis

description: Historically, the terms partial (PGD) and mixed gonadal dysgenesis (MGD) have been used to describe incomplete testicular differentiation in individuals with 46,XY or 45,X/46,XY karyotypes, respectively. However, it is currently unclear to what extent clinical features actually differ between these individuals. The aim of this study was to compare clinical, laboratory, and histological findings in these 2 groups. Patients with testicular dysgenesis seen in our service between 1989 and 2013 were selected. Sixty-one patients met the inclusion criteria. Individuals with 46,XY and 45,X/46,XY karyotypes were compared regarding genital features, gonadal histology and function, growth, and associated conditions. Twenty-five had mosaicism with a 45,X cell line (MGD), while a 46,XY karyotype (PGD) was found in 36 cases belonging to 32 families. Mutations in <i>NR5A1</i>, <i>WT1</i>, and <i>SRY</i> genes associated with testicular dysgenesis were found in 12 families. There were no significant differences regarding parental consanguinity, degree of external androgenization, gonadal location, histology, and function, and associated conditions. However, in the MGD group, the presence of a uterus, lower birth weight and length, and short stature were more often observed. Therefore, the use of histological features to classify PDG and MGD should be abandoned and replaced by classification based on karyotype.
DOI: 10.6084/m9.figshare.11346854.v1
title: CM_database.accdb

description: <b>Summary: </b>Database of confusion matrices retrieved from scientific literature. Suitable for research on the creation and explotation of the confusion matrix that remain as interestint topics, such as new tools, sampling design, indices derived from the matrix, proposals in testing statistical hypotheses and so on.<b><br></b><b>Format:</b> Microsoft Access
DOI: 10.6084/m9.figshare.11346779
title: How to used advanced search keys depending on context

description: The advance search keys work differently based on the context.<br>Depending on the context, the search will work on public data saved on the entity (item/ collection/project) or on their private state.
DOI: 10.6084/m9.figshare.11346854.v2
title: Database of confusion matrices (Microsoft Access)

description: <b>Summary: </b>Database of confusion matrices retrieved from scientific literature. Suitable for research on the creation and explotation of the confusion matrix that remain as interestint topics, such as new tools, sampling design, indices derived from the matrix, proposals in testing statistical hypotheses and so on.<b><br></b><b>Format:</b> Microsoft Access
DOI: 10.6084/m9.figshare.11346764
title: Supplementary table 6

description: Table S6. Likelihood-based haplotype-trait association using only 250K variant.
DOI: 10.6084/m9.figshare.11346761
title: Supplementary table 5

description: Table S5. Likelihood-based haplotype-trait association using imputed and 250K variant.