cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25549/bunkerhill-ouc11399c9zu
title: Clay St. curb separation, view southwesterly, Bunker Hill, Los Angeles, 1963-02-11

description: Clay Street curb separation, view southwesterly, Bunker Hill, Los Angeles, California, USA, 11 February 1963. "Feb. 11, 1963 10 am. View southwesterly on east side of Clay Street in front of parcel 17-2. Note separation of curb from paving. Aproximate separation is 1½". Lee Vore and Al Levy" -- handwritten on back.
DOI: 10.34740/kaggle/dsv/13619234
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.25549/bunkerhill-ouc11399ca07
title: Bunker Hill neighborhood demolition, 1963/1981-02

description: Photographs of areas in the Bunker Hill neighborhood slated for demolition (DEM), Los Angeles, California, USA, 2 May 1962 through 19 March 1969.
DOI: 10.25549/bunkerhill-ouc11399ca0y
title: Bunker Hill neighborhood demolition, 1963/1981-02

description: Photographs of areas in the Bunker Hill neighborhood slated for demolition (DEM), Los Angeles, California, USA, 2 May 1962 through 19 March 1969.
DOI: 10.5281/zenodo.17528811
title: Lifestyle-Dependent Intron Divergence and Conserved Multi-Scale Genomic Organization Patterns Across 28 Nematode Genome

description: # Dataset Description

This dataset contains comprehensive intron architecture and sequence-based genomic organization data from 28 nematode species (12 free-living, 16 parasitic) representing approximately 400 million years of evolution.

**Note**: This dataset is currently restricted during peer review. It will be made publicly available upon acceptance of the associated manuscript.

## Contents

- **Primary intron dataset**: 4,581,099 intron records with sequences, genomic coordinates, GC content, and splice site annotations (1.9 GB)- **Species summary statistics**: Aggregated metrics for all 28 species- **Analysis scripts**: Complete Python and R pipeline for data integration and multi-scale genomic organization analysis- **Documentation**: Detailed data dictionary, README, and reproducibility instructions

## Data Source

All genome assemblies and gene annotations were obtained from WormBase ParaSite release WBPS19 (https://parasite.wormbase.org/), accessed October 2022.

## Associated Publication

This dataset accompanies the manuscript:

**"Lifestyle-Dependent Intron Divergence and Conserved Multi-Scale Genomic Organization Patterns Across 28 Nematode Genomes"**

Submitted to PeerJ, November 2025

## Access

During peer review: Access available to editors and reviewers upon requestAfter acceptance: Full public access with CC BY 4.0 license

## Key Findings

- Parasitic nematodes show 35% longer introns and 11% lower GC content compared to free-living species- Multi-scale genomic organization patterns remain remarkably conserved across lifestyle transitions- Power-law scaling exponents exhibit near-perfect conservation

## File Structure```zenodo_package/├── data/│   ├── introns_28species_integrated.csv (primary dataset)│   ├── species_summary_statistics.csv│   └── additional summary tables├── scripts/ (analysis pipeline)├── documentation/ (data dictionary)└── README.md (detailed documentation)```

## Reproducibility

All analyses are fully reproducible using the provided scripts and publicly available genome data from WormBase ParaSite WBPS19.

## License

Creative Commons Attribution 4.0 International (CC BY 4.0)(License will be fully activated upon public release)

## Contact

Masato Tanigawatanigawa@oita-u.ac.jpDepartment of Biophysics, Fuculty of Medicine, Oita University```

### **1-6. License**```選択:Creative Commons Attribution 4.0 International

注:Restrictedでも選択可能。論文受理後に有効化される。```

### **1-7. Keywords**```

1. introns2. nematodes3. comparative genomics4. genome organization5. parasitism6. Caenorhabditis elegans7. lifestyle evolution8. intron architecture9. multi-scale analysis10. WormBase ParaSite11. sequence-based inference12. scale invariance```

### **1-8. Additional information**```Version: v1.0

Language: English

NotesThis dataset is embargoed during peer review and will be made publicly available upon manuscript acceptance.```

---
DOI: 10.5281/zenodo.17528812
title: Lifestyle-Dependent Intron Divergence and Conserved Multi-Scale Genomic Organization Patterns Across 28 Nematode Genome

description: # Dataset Description

This dataset contains comprehensive intron architecture and sequence-based genomic organization data from 28 nematode species (12 free-living, 16 parasitic) representing approximately 400 million years of evolution.

**Note**: This dataset is currently restricted during peer review. It will be made publicly available upon acceptance of the associated manuscript.

## Contents

- **Primary intron dataset**: 4,581,099 intron records with sequences, genomic coordinates, GC content, and splice site annotations (1.9 GB)- **Species summary statistics**: Aggregated metrics for all 28 species- **Analysis scripts**: Complete Python and R pipeline for data integration and multi-scale genomic organization analysis- **Documentation**: Detailed data dictionary, README, and reproducibility instructions

## Data Source

All genome assemblies and gene annotations were obtained from WormBase ParaSite release WBPS19 (https://parasite.wormbase.org/), accessed October 2022.

## Associated Publication

This dataset accompanies the manuscript:

**"Lifestyle-Dependent Intron Divergence and Conserved Multi-Scale Genomic Organization Patterns Across 28 Nematode Genomes"**

Submitted to PeerJ, November 2025

## Access

During peer review: Access available to editors and reviewers upon requestAfter acceptance: Full public access with CC BY 4.0 license

## Key Findings

- Parasitic nematodes show 35% longer introns and 11% lower GC content compared to free-living species- Multi-scale genomic organization patterns remain remarkably conserved across lifestyle transitions- Power-law scaling exponents exhibit near-perfect conservation

## File Structure```zenodo_package/├── data/│   ├── introns_28species_integrated.csv (primary dataset)│   ├── species_summary_statistics.csv│   └── additional summary tables├── scripts/ (analysis pipeline)├── documentation/ (data dictionary)└── README.md (detailed documentation)```

## Reproducibility

All analyses are fully reproducible using the provided scripts and publicly available genome data from WormBase ParaSite WBPS19.

## License

Creative Commons Attribution 4.0 International (CC BY 4.0)(License will be fully activated upon public release)

## Contact

Masato Tanigawatanigawa@oita-u.ac.jpDepartment of Biophysics, Fuculty of Medicine, Oita University```

### **1-6. License**```選択:Creative Commons Attribution 4.0 International

注:Restrictedでも選択可能。論文受理後に有効化される。```

### **1-7. Keywords**```

1. introns2. nematodes3. comparative genomics4. genome organization5. parasitism6. Caenorhabditis elegans7. lifestyle evolution8. intron architecture9. multi-scale analysis10. WormBase ParaSite11. sequence-based inference12. scale invariance```

### **1-8. Additional information**```Version: v1.0

Language: English

NotesThis dataset is embargoed during peer review and will be made publicly available upon manuscript acceptance.```

---
DOI: 10.25549/bunkerhill-ouc11399ca12
title: Bunker Hill neighborhood demolition & moving, 1963-1964

description: Photographs of areas in the Bunker Hill neighborhood in prepration for moving houses or excavating, Los Angeles, California, USA, 1963-1964.
DOI: 10.25549/bunkerhill-ouc11399ca1i
title: Bunker Hill neighborhood demolition & moving, 1963-1964

description: Photographs of areas in the Bunker Hill neighborhood in prepration for moving houses or excavating, Los Angeles, California, USA, 1963-1964.
DOI: 10.25549/bunkerhill-ouc11399ca1u
title: Bunker Hill neighborhood demolition & moving, 1963-1964

description: Photographs of areas in the Bunker Hill neighborhood in prepration for moving houses or excavating, Los Angeles, California, USA, 1963-1964.
DOI: 10.25549/bunkerhill-ouc11399ca1w
title: Bunker Hill neighborhood demolition & moving, 1963-1964

description: Photographs of areas in the Bunker Hill neighborhood in prepration for moving houses or excavating, Los Angeles, California, USA, 1963-1964.
DOI: 10.25549/bunkerhill-ouc11399c9fm
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc11399c9jw
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc11399c9z1
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc11399ca26
title: Cleared land on Bunker Hill, Los Angeles, 1960s

description: Aerial photographs of cleared land on Bunker Hill, Los Angeles, California, USA, 1963-1969?.
DOI: 10.25549/bunkerhill-ouc111376708
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376814
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376815
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376819
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc11399ca1v
title: Bunker Hill neighborhood demolition & moving, 1963-1964

description: Photographs of areas in the Bunker Hill neighborhood in prepration for moving houses or excavating, Los Angeles, California, USA, 1963-1964.
DOI: 10.15468/dl.ueyb6r
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Emplectonema intestinalis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016954-251025141854904/datasets/export for details.
DOI: 10.25549/bunkerhill-ouc111376705
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376816
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376820
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376829
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc11399dn7w
title: Bunker Hill neighborhood demolition, 1962-05/1969-03

description: Photographs of areas in the Bunker Hill neighborhood slated for demolition (DEM), Los Angeles, California, USA, 2 May 1962 through 19 March 1969.
DOI: 10.25549/bunkerhill-ouc11399dn82
title: Bunker Hill neighborhood demolition, 1962-05/1969-03

description: Photographs of areas in the Bunker Hill neighborhood slated for demolition (DEM), Los Angeles, California, USA, 2 May 1962 through 19 March 1969.
DOI: 10.25549/bunkerhill-ouc111376836
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376825
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376833
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376859
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.25549/bunkerhill-ouc111376853
title: Bunker Hill Redevelopment Project records (1938-1997)

description: The collection consists of items related to the redevelopment of Bunker Hill: legal documents, reports, studies, brochures, proposals, serials, books, photographs, design proposals, and Community Redevelopment Agency studies. Also found within the collection are planning documents and other related materials concerning surrounding downtown areas: Central City East, South Park, Financial District, Historic Core (including the Broadway Corridor), Seventh Street Retail Development, and various housing, tourism, retail, and transportation reports. See the finding aid at https://archives.usc.edu/repositories/3/resources/227.
DOI: 10.15468/dl.pyesxn
title: Occurrence Download

description: A dataset containing 361120 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Sphaeralcea polychroma, Sidalcea keckii, Acronychia littoralis, Monarda citriodora, Viola pentadactyla, Viola lacmonica, Viola adunca, Bersama tysoniana, Conospermum ericifolium, Conospermum unilaterale, Cordia parvifolia, Viola semseyana, Melaleuca capitata, Melaleuca ciliosa, Melaleuca glomerata, Melaleuca groveana, Melaleuca leptospermoides, Melaleuca strobophylla, Eriophorum scheuchzeri, Eriophorum vaginatum, Bobartia gracilis, Viola corsica, Viola bakeri, Thymelaea broteriana, Thymelaea aucheri, Colobanthus nivicola, Cordia dichotoma, Haloragis dura, Poa hackelii, Pycnocycla tomentosa, Viola kopaonikensis, Coreopsis tinctoria, Anthospermum dregei, Melaleuca viminea, Ficinia filiformis, Stenomesson chilense, Romulea ligustica, Romulea gigantea, Romulea barkerae, Ferraria brevifolia, Poa cyrenaica, Poa holciformis, Poa schimperiana, Mancoa hispida, Ornithocarpa torulosa, Ficinia swartruggensis, Viola portalesia, Viola vourinensis, Viola reichei, Viola ganiatsasii, Viola silicestris, Acronychia baeuerlenii, Tagetes erecta, Tagetes filifolia, Acmadenia maculata, Tagetes lacera, Navarretia fossalis, Navarretia leucocephala, Viola occulta, Viola oxyodontis, Viola perplexa, Viola isaurica, Viola beckiana, Tetraria vaginata, Conospermum brownii, Navarretia miwukensis, Navarretia crystallina, Viola serresiana, Haloragis maierae, Tagetes stenophylla, Corybas miscellus, Melaleuca apostiba, Melaleuca quadrifaria, Melaleuca spathulata, Prospero idaeum, Ferraria variabilis, Anisomeles principis, Viola allchariensis, Viola aurata, Melaleuca xerophila, Cordia monoica, Viola culminis, Carthamus boissieri, Lambertia echinata, Nolletia gariepina, Cistanche rosea, Alnus cordata, Romulea autumnalis, Romulea cedarbergensis, Romulea limbarae, Romulea aquatica, Romulea rupestris, Poa cumingii, Alnus rohlenae, Pectocarya recurvata, Viola primulifolia, Viola pulvinata, Platanus racemosa)",
 "Year is greater than or equal to 1950"
 ]
}

 The dataset includes 361120 records from 1361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016940-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.