cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5796261
title: The antique genetic plight of the Mediterranean monk seal (Monachus monachus)

description: This repository contains all the scripts and most of the intermediary files necessary to replicate the analyses of the preprint "The antique genetic plight of the Mediterranean monk seal (<em>Monachus monachus</em>)" available at: https://biorxiv.org/cgi/content/short/2021.12.23.473149v3 This version of the data has been revised according to two rounds of review by two reviewers' comments and suggestions during a submission process at Proceedings of the Royal Society B. Within each of the different zipped folders a readme.txt file briefly explains how the analyses are organized. We thank all the collectors and museums listed in Table S1 for providing access to genetic samples. We are grateful to Sophie Courjal and the staff of the “Plateau technique - Biologie moléculaire et microbiologie” at EDB for their assistance during lab work, to P. Kyritsis [Archipelagos], for his logistic help, to I. Carvalho for early comments on the manuscript and two anonymous reviewers who significantly helped to improve the manuscript. This work was funded by the Fondation Prince Albert II de Monaco (project “Génétique de la conservation du phoque moine de Méditerranée”). The Genotoul bioinformatics (Bioinfo Genotoul) platforms provided computing resources. JS was supported by PANGO-GO (ANR-17-CE02-0001), and LABEX TULIP (ANR-10-LABX-0041).
description: Abstract Disentangling the impact of Late Quaternary climate change from human activities can have crucial implications on the conservation of endangered species. We investigated the population genetics and demography of the Mediterranean monk seal (Monachus monachus), one of the world's most endangered marine mammals, through an unprecedented dataset encompassing historical (extinct) and extant populations from the eastern North Atlantic to the entire Mediterranean Basin. We show that Western-Sahara/Mauritania (Cabo Blanco), Madeira, Western Mediterranean (historical range) and Eastern Mediterranean regions segregate in four populations. This structure is likely the consequence of recent drift, combined with long-term isolation by distance (R2 = 0.7), resulting from prevailing short-distance (&lt; 500 km) and infrequent long-distance dispersal (&lt; 1,500 km). All populations (Madeira especially), show high levels of inbreeding and low levels of genetic diversity, seemingly declining since historical time, but surprisingly not being impacted by the 1997 massive die-off in Cabo Blanco. Approximate Bayesian Computation analyses support scenarios combining local extinctions and a major effective population size decline in all populations during Antiquity. Our results suggest that the early densification of human populations around the Mediterranean Basin coupled to the development of seafaring techniques were the main drivers of the decline of Mediterranean monk seals.
DOI: 10.6084/m9.figshare.20346552
title: SUMO_results.zip

description: SUMO simulations outputs for the paper "How Routing Strategies Impact Urban Emissions" (https://arxiv.org/abs/2207.01456)
DOI: 10.6084/m9.figshare.20346552.v1
title: SUMO_results.zip

description: SUMO simulations outputs for the paper "How Routing Strategies Impact Urban Emissions" (https://arxiv.org/abs/2207.01456)
DOI: 10.5281/zenodo.4781018
title: Data from: "Inundation area drives hippo group aggregation and dispersal in a seasonal floodplain system"

description: Changes in hippo abundance and density, hippo pod abundance and density, and inter-pod distance in relationship to changes in inundation area.
DOI: 10.5281/zenodo.4781017
title: Data from: "Inundation area drives hippo group aggregation and dispersal in a seasonal floodplain system"

description: Changes in hippo abundance and density, hippo pod abundance and density, and inter-pod distance in relationship to changes in inundation area.
DOI: 10.34740/kaggle/dsv/3966785
title: Challenge 1 - COVID-19 in LATAM
DOI: 10.34740/kaggle/dsv/3966795
title: Challenge 1 - COVID-19 in LATAM
DOI: 10.34740/kaggle/dsv/3966800
title: Challenge 1 - COVID-19 in LATAM
DOI: 10.6084/m9.figshare.19316045
title: The association of T2D with a set of 121 genetic variants

description: Type 2 Diabetes Mellitus (T2D) is classified as a multifactorial and polygenic disease. The search for T2D associated DNA variants is complex; population studies are essential to assess the genetic influence. Association of T2D with a set of 121 genetic variants (63 located in 37 genes and four intergenic regions, and 58 informative ancestry markers) was assessed in 442 subjects (262 cases and 180 controls) from Northeastern Mexico. The approach was made using different transmission models: dominant, recessive, and MLMM. Age, body mass index (BMI), and gender data were obtained and considered as cofactors (gene-environment (G × E) interaction) in a multi-locus genetic model, and the ORs were calculated. Genetic variants were classified as Regulatory Region Variants, Nonsense-mediated decay transcript variants, and Missense Variants. Thirteen genetic variants showed association (P&lt;0.05 after Bonferroni correction), being the most significant variants <i>RPTOR</i> (rs12950541 p&lt; 2.18x10<sup>-32</sup>) and <i>UCP3 </i>(rs7930460 and rs1800849 p&lt;8.67x 10<sup>-16</sup> and 4.64x 10<sup>-7</sup>, respectively) with the additive genetic model (MLMM). These results can contribute to understanding the role of genetic variants on the risk of developing T2D in the Northeastern Mexican mestizo population and support future studies to evaluate and validate as biomarkers to improve genetic assessment via precision medicine.
DOI: 10.6084/m9.figshare.19316045.v2
title: The association of T2D with a set of 121 genetic variants

description: Type 2 Diabetes Mellitus (T2D) is classified as a multifactorial and polygenic disease. The search for T2D associated DNA variants is complex; population studies are essential to assess the genetic influence. Association of T2D with a set of 121 genetic variants (63 located in 37 genes and four intergenic regions, and 58 informative ancestry markers) was assessed in 442 subjects (262 cases and 180 controls) from Northeastern Mexico. The approach was made using different transmission models: dominant, recessive, and MLMM. Age, body mass index (BMI), and gender data were obtained and considered as cofactors (gene-environment (G × E) interaction) in a multi-locus genetic model, and the ORs were calculated. Genetic variants were classified as Regulatory Region Variants, Nonsense-mediated decay transcript variants, and Missense Variants. Thirteen genetic variants showed association (P&lt;0.05 after Bonferroni correction), being the most significant variants <i>RPTOR</i> (rs12950541 p&lt; 2.18x10<sup>-32</sup>) and <i>UCP3 </i>(rs7930460 and rs1800849 p&lt;8.67x 10<sup>-16</sup> and 4.64x 10<sup>-7</sup>, respectively) with the additive genetic model (MLMM). These results can contribute to understanding the role of genetic variants on the risk of developing T2D in the Northeastern Mexican mestizo population and support future studies to evaluate and validate as biomarkers to improve genetic assessment via precision medicine.
DOI: 10.6084/m9.figshare.19316045.v1
title: GENOTYPE FREQ 6 MZO 2022.xlsx

description: Type 2 Diabetes Mellitus (T2D) is classified as a multifactorial and polygenic disease. The search for T2D associated DNA variants is complex; population studies are essential to assess the genetic influence. Association of T2D with a set of 121 genetic variants (63 located in 37 genes and four intergenic regions, and 58 informative ancestry markers) was assessed in 442 subjects (262 cases and 180 controls) from Northeastern Mexico. The approach was made using different transmission models: dominant, recessive, and MLMM. Age, body mass index (BMI), and gender data were obtained and considered as cofactors (gene-environment (G × E) interaction) in a multi-locus genetic model, and the ORs were calculated. Genetic variants were classified as Regulatory Region Variants, Nonsense-mediated decay transcript variants, and Missense Variants. Thirteen genetic variants showed association (P&lt;0.05 after Bonferroni correction), being the most significant variants <i>RPTOR</i> (rs12950541 p&lt; 2.18x10<sup>-32</sup>) and <i>UCP3 </i>(rs7930460 and rs1800849 p&lt;8.67x 10<sup>-16</sup> and 4.64x 10<sup>-7</sup>, respectively) with the additive genetic model (MLMM). These results can contribute to understanding the role of genetic variants on the risk of developing T2D in the Northeastern Mexican mestizo population and support future studies to evaluate and validate as biomarkers to improve genetic assessment via precision medicine.
DOI: 10.21985/n2-vma1-yt36
title: Videos for Swissler Dissertation
DOI: 10.6084/m9.figshare.20343993
title: source data for fig6BCD

description: RyanR2-E4872Q (EQ) mutation reduces amyloid plague accumulation and rescues LTP defect in APPPS1 mice
DOI: 10.6084/m9.figshare.20343993.v1
title: source data for fig6BCD

description: RyanR2-E4872Q (EQ) mutation reduces amyloid plague accumulation and rescues LTP defect in APPPS1 mice
DOI: 10.6084/m9.figshare.20344008
title: source data for fig7BCD

description: RyanR2-E4872Q (EQ) mutation rescues LTP defect in APPKI mice
DOI: 10.6084/m9.figshare.20344008.v1
title: source data for fig7BCD

description: RyanR2-E4872Q (EQ) mutation rescues LTP defect in APPKI mice
DOI: 10.6084/m9.figshare.20343915
title: source data for fig 4bcd

description: RyanR2-E4872Q (EQ) mutation upregulate autophagy pathway in vivo
DOI: 10.6084/m9.figshare.20343906
title: source data for fig5bcd

description: RyanR2-E4872Q (EQ) mutation promotes APP degradation through autophagic pathway
DOI: 10.6084/m9.figshare.20343906.v1
title: source data for fig5bcd

description: RyanR2-E4872Q (EQ) mutation promotes APP degradation through autophagic pathway
DOI: 10.6084/m9.figshare.20343915.v1
title: source data for fig 4bcd

description: RyanR2-E4872Q (EQ) mutation upregulate autophagy pathway in vivo
DOI: 10.6084/m9.figshare.20341278
title: source data for fig3D

description: Basal RyanR2 activity regulates autophagy flux by modulating CaN-pAMPK-pULK1 pathway
DOI: 10.6084/m9.figshare.20341278.v1
title: source data for fig3D

description: Basal RyanR2 activity regulates autophagy flux by modulating CaN-pAMPK-pULK1 pathway
DOI: 10.6084/m9.figshare.20334888
title: source data for fig2c

description: Basal RyanR activity regulates autophagy flux by activating CaN
DOI: 10.6084/m9.figshare.20334885
title: source data for fig2b

description: Basal RyanR activity regulates autophagy flux by activating CaN
DOI: 10.6084/m9.figshare.20334885.v1
title: source data for fig2b

description: Basal RyanR activity regulates autophagy flux by activating CaN
DOI: 10.6084/m9.figshare.20341245
title: source data for fig3b

description: Basal RyanR2 activity regulates autophagy flux by modulating CaN-pAMPK-pULK1 pathway
DOI: 10.6084/m9.figshare.20341245.v1
title: source data for fig3b

description: Basal RyanR2 activity regulates autophagy flux by modulating CaN-pAMPK-pULK1 pathway
DOI: 10.6084/m9.figshare.20332557
title: source data for fig1D

description: RyanR2-E4872Q (EQ) mutation increases autophagic flux in primary hippocampal neuronal cultures
DOI: 10.6084/m9.figshare.20332557.v1
title: source data for fig1D

description: RyanR2-E4872Q (EQ) mutation increases autophagic flux in primary hippocampal neuronal cultures
DOI: 10.6084/m9.figshare.20321559.v1
title: Fig1B-source data

description: RyanR2-E4872Q (EQ) mutation up regulate autophgy flux
DOI: 10.6084/m9.figshare.20321559
title: Fig1B-source data

description: RyanR2-E4872Q (EQ) mutation up regulate autophgy flux
DOI: 10.21985/n2-3x7m-ce97
title: Videos for Swissler Dissertation
DOI: 10.6084/m9.figshare.20346645
title: Running data for Fig 1, 2, and 3

description: Running data for Fig1-2-3 for Sisson et al., 2022 which includes shifting data for Fig 1 between Duper and WT, shifting and light pulsing data for WT and Cry1-/- mice as well as running data for D2O experiments.
DOI: 10.6084/m9.figshare.20346645.v1
title: Running data for Fig 1, 2, and 3

description: Running data for Fig1-2-3 for Sisson et al., 2022 which includes shifting data for Fig 1 between Duper and WT, shifting and light pulsing data for WT and Cry1-/- mice as well as running data for D2O experiments.
DOI: 10.21227/nwyf-0559
title: EPRI Electric Transmission Imagery

description: The Electric Power Research Institute (EPRI) is building a community to advance utility infrastructure inspection. To jumpstart collaboration EPRI is sharing labeled datasets. These data may support immediate and future research. Advances in automated inspection workflows can benefit society. Future tools may revolutionize traditional workflows and have safety, quality, and efficiency benefits to utilities and consumers. More situational awareness of eclectic utility infrastructure can reduce the likelihood of in-service equipment failures.Visually inspecting high voltage electrical infrastructure is complex. There are several components and areas of interest each with unique degradation modes. Automated inspection technologies may require large datasets to handle the real-world complexities. It is very likely these datasets do not exist in 2022. EPRI is addressing the data gap by creating and sharing datasets to support research and commercial innovation.The Transmission H-frame Dataset 1.0 dataset contains 12,158 drone collected images of one transmission structure type, an "H-frame" structure type. 11,483 have been labeled and split 8,038 for public training and 3,445 for withheld testing.These images can be obtained by completing the form below.https://forms.office.com/r/2Qy0n4NnVAhttps://www.kaggle.com/competitions/electric-transmission-imagery/overview
DOI: 10.5281/zenodo.6872172
title: Supplemental Datafiles for the manuscript "Crustal structure of northern Borneo from VDSS: Implications for subduction termination and the tectonic reconstruction of SE Asia"

description: Processed waveform data (windowed/filtered) from the seismic stations for the Virtual Deep Seismic Sounding (VDSS) study in northern Borneo.
DOI: 10.5281/zenodo.6872171
title: Supplemental Datafiles for the manuscript "Crustal structure of northern Borneo from VDSS: Implications for subduction termination and the tectonic reconstruction of SE Asia"

description: Processed waveform data (windowed/filtered) from the seismic stations for the Virtual Deep Seismic Sounding (VDSS) study in northern Borneo.
DOI: 10.34740/kaggle/dsv/3964569
title: Multibody kinematic optimisation vs body fat
DOI: 10.14279/depositonce-16021
title: Stochastic Modelling Approach to identify Uncertainties of Karst Conduit Networks in Carbonate Aquifers - Data

description: This dataset contains (1) The realizations for the five hundred 3D conduit networks (.vtk output files) generated using the SKS algorithm (Borghi et al., 2012), which form the basis for the Karst Probability Map. (2) An overview and further explanations of the parameters assigned to the Fast-Marching-Algorithm in the SKS. (3) Climate data (Precipitation, Tmin & Tmax) from 1990 to 2018 over the recharge area of the Western Mountain Aquifer (Israel & Palestinian Territories). Information on each station can be found in the file "stations". It includes data for research paper: "Banusch, S., Somogyvari, M., Sauter, M., Renard, P., Engelhardt, I. (2022). Stochastic Modelling Approach to identify Uncertainties of Karst Conduit Networks in Carbonate Aquifers" published in Water Resources Research
DOI: 10.5281/zenodo.6872209
title: Earthquake Catalogues for DWARFS (Dense Westland Arrays Researching Fault Segmentation)

description: This dataset contains earthquake hypocentral information catalogued as part of the DWARFS (Dense Westland Arrays Researching Fault Segmentation) broadband seismometer networks along New Zealand's Alpine Fault, between April 2019-April 2020. 'Preferred Lat/Lon/Depth' refers to origin determined by method under 'Method'. HypoDD is the preferred method, but some origins could not be relocated and so we present the NonLinLoc derived origin instead. All magnitudes are Local magnitudes calculated using displacements on the vertical channel (MLv). All times are in UTC time. This dataset accompanies a publication recently submitted (July 2022) to the AGU journal 'Journal of Geophysical Research: Solid Earth' entitled 'Heterogeneity in microseismicity and stress near rupture-limiting section boundaries along the late interseismic Alpine Fault'.
DOI: 10.5281/zenodo.6332919
title: Earthquake Catalogues for DWARFS (Dense Westland Arrays Researching Fault Segmentation)

description: This dataset contains earthquake hypocentral information catalogued as part of the DWARFS (Dense Westland Arrays Researching Fault Segmentation) broadband seismometer networks along New Zealand's Alpine Fault, between April 2019-April 2020. 'Preferred Lat/Lon/Depth' refers to origin determined by method under 'Method'. HypoDD is the preferred method, but some origins could not be relocated and so we present the NonLinLoc derived origin instead. All magnitudes are Local magnitudes calculated using displacements on the vertical channel (MLv). All times are in UTC time. This dataset accompanies a publication recently submitted (July 2022) to the AGU journal 'Journal of Geophysical Research: Solid Earth' entitled 'Heterogeneity in microseismicity and stress near rupture-limiting section boundaries along the late interseismic Alpine Fault'.
DOI: 10.25919/jey9-rv59
title: Parkes observations for project P1152 semester 2022APRS_10

description: A large population of millisecond pulsars (MSPs) is expected in the Galactic bulge and is supported, among others, by the existence of a spatially extended gamma-ray excess emission discovered in Fermi-LAT data towards the inner Galaxy. Discovering MSPs in the Galactic bulge, would be a major breakthrough with strong impact onto several fields. In Berteaud et al. [2021a, 2021b], we have designed a new method to select bulge MSP candidates among Chandra X-ray cataloged sources. We also analysed imaging data of the VLA and identified 5 potential bulge MSP candidates, detected both with Chandra and VLA. Here we propose to follow up these 5 sources with the UWL receiver system on Parkes, which has the unique potential of probe their MSP nature thanks to multi-band, deep, observations. With the requested time, for two high-priority candidates, we will be able identify any bulge MSP with a pulse period P &gt; 1 ms. Three targets at lower priority can be identified as bulge MSP if their period is larger than 4 ms. Our goal is to provide the first multi-wavelength diagnostics of bulge MSPs, gather information about the MSP/pulsar ratio among the bulge X-ray candidates, and, finally, unveil the nature of the mysterious Fermi-LAT excess.
DOI: 10.34740/kaggle/dsv/3966883
title: Elon Musk Tweets
DOI: 10.6084/m9.figshare.20346678
title: [TSE] Managing Technical Debt Using Intelligent Techniques - A Systematic Literature Review

description: Supplementay Material of the paper "Managing Technical Debt Using Intelligent Techniques - A Systematic Literature Review"
DOI: 10.6084/m9.figshare.20346678.v1
title: [TSE] Managing Technical Debt Using Intelligent Techniques - A Systematic Literature Review

description: Supplementay Material of the paper "Managing Technical Debt Using Intelligent Techniques - A Systematic Literature Review"
DOI: 10.17632/hxxckxtb8p.1
title: CPG LC/MS

description: Mass spectrometry data from Caulobacter crescentus. Strains include: wild type, ccna_01217 deletion, ccna_01218 deletion, ccna_01219 deletion, and the respective complementation strains. Lipids were extracted by the method of Bligh and Dyer and analyzed by normal phase LC/MS. MS/MS analysis was used to determine the structure of the ceramide phosphoglycerate lipid.
DOI: 10.6084/m9.figshare.20335158
title: Parlato and Mott_Tadpole Predatory Effects Project_Full Dataset

description: This dataset includes wood frog tadpole abundance, morphology, growth, and diet data, freshwater invertebrate abundance data by taxon, and recordings of relevant abiotic environmental variables. Data are divided into separate Excel sheets. Data is based off field collections conducted in eastern and central Kentucky in February - May of 2021.
DOI: 10.6084/m9.figshare.20335158.v1
title: Parlato and Mott_Tadpole Predatory Effects Project_Full Dataset

description: This dataset includes wood frog tadpole abundance, morphology, growth, and diet data, freshwater invertebrate abundance data by taxon, and recordings of relevant abiotic environmental variables. Data are divided into separate Excel sheets. Data is based off field collections conducted in eastern and central Kentucky in February - May of 2021.
DOI: 10.6084/m9.figshare.20224401.v1
title: Seasonal variation in the response of a monoecious crop to increased temperature and fertilization

description: Data and metadata used to support the findings presented in the manuscript "Seasonal variation in the response of a monoecious crop to increased temperature and fertilization". The study was conducted in southeastern Mexico. The data includes data on the response of vegetative and floral traits, legitimate visitation, fruit set, and number of seeds of Cucurbita pepo plants to increased temperature and fertilization in the dry and rainy seasons.
DOI: 10.5281/zenodo.6872670
title: Fichaje de Articulos

description: Archivos de fichaje
DOI: 10.5281/zenodo.6872669
title: Fichaje de Articulos

description: Archivos de fichaje
DOI: 10.34740/kaggle/dsv/3967139
title: OntoUML/UFO Catalog
DOI: 10.7910/dvn/yetg8c
title: Replication Data for US Military Deployments and the Risk of Coup d’État

description: Replication data for US Military Deployments and the Risk of Coup d’État at Foreign Policy Analysis.
DOI: 10.6084/m9.figshare.20342559
title: data-lin.xlsx

description: we retrospectively reviewed BALF samples which detected for metagenomic next-generation sequencing (mNGS) from March 2019 to April 2022 in China.
DOI: 10.6084/m9.figshare.20342559.v3
title: data-lin.xlsx

description: we retrospectively reviewed BALF samples which detected for metagenomic next-generation sequencing (mNGS) from March 2019 to April 2022 in China.
DOI: 10.6084/m9.figshare.20342559.v2
title: data.xlsx

description: we retrospectively reviewed BALF samples which detected for metagenomic next-generation sequencing (mNGS) from March 2019 to April 2022 in China.