cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11971968.v1
title: Glasshouse trial data assessing the influence of elevated temperature and CO2 on Fusarium crown rot in a selection of wheat genotypes at key growth stages.

description: We collected the data provided here for an experiment aimed to assess the change in Fusarium crown rot symptom and colonisation in three glasshouse environments: ambient carbon-dioxide with cool growing temperatures, elevated carbon-dioxide with cool growing temperatures, and elevated carbon-dioxide and warm growing temperatures. The experiment measured the length of CR browning on the stems, relative quantity of Fusarium pseudograminearum (Fp) DNA (tri5 gene) to wheat host DNA (Wheat-actin gene).You can find more detail in the article linked in the 'references' below: Melloy P, Aitken E, Luck J, Chakraborty S, Obanor F, 2014. <b>The influence of increasing temperature and CO2 on Fusarium crown rot susceptibility of wheat genotypes at key growth stages.</b> <i>European Journal of Plant Pathology</i> 140, 19–37.<br>The code and metadata at the GitHub repo: https://github.com/PaulMelloy/FCR_CO2_GH<br><br>There are two files in this share: 1301_FCRatElevatedCO2_Glasshouse_FB_figshare_PM.csv - contains the data for assessing relative fungal biomass.1301_FCRatElevatedCO2_Glasshouse_figshare_RAW_PM.csv - contains data for calculating FCR incidence and FCR severity, and plant biomass measurements.<br>
DOI: 10.6084/m9.figshare.11971947
title: Adjusted data of Floats 2902754 and 2902755.txt

description: The dataset are related to the paper that was submitted to the journal "Global Biogeochemical Cyles".
DOI: 10.6084/m9.figshare.11971947.v1
title: Adjusted data of Floats 2902754 and 2902755.txt

description: The dataset are related to the paper that was submitted to the journal "Global Biogeochemical Cyles".
DOI: 10.6084/m9.figshare.11971908
title: Probing the flexibility of Zika virus envelope protein DIII epitopes using molecular dynamics simulations

description: Zika virus (ZIKV) envelope protein (E) domain III (DIII) mediates viral attachment and fusion. The DIII facilitates cell receptor recognition, and includes several ZIKV antibody epitopes. The DIII is also considered as an antigenic target for ZIKV-neutralising antibodies. Understanding the flexibility and dynamical behaviour of ZIKV DIII can aid the design of vaccines against ZIKV. Using molecular dynamics (MD) simulations, the flexibility of DIII and its epitopes were characterised. The final structure from a 100 ns-long MD simulation was docked to anti-DIII ZIKV Fabs (ZV67 and ZV64). Interestingly, the analysis of the MD simulations revealed that the residues of the C-C’ loop and the ABDE sheet epitopes (epitopes for moderately neutralising ZV64 and weakly neutralising ZV2 mAbs, respectively) were highly flexible, whereas the LR epitope for strongly neutralising ZV67 mAb was rigid.
DOI: 10.6084/m9.figshare.11971902
title: Phoenixin-20 (PNX-20) Suppresses Food Intake, Modulates Glucoregulatory Enzymes, and Enhances Glycolysis in Zebrafish

description: Phoenixin 20 and its role in feeding, and metabolism.<br><br>Supplementary Figure 3.pdf <br><br><br><br>
DOI: 10.6084/m9.figshare.11971908.v1
title: Probing the flexibility of Zika virus envelope protein DIII epitopes using molecular dynamics simulations

description: Zika virus (ZIKV) envelope protein (E) domain III (DIII) mediates viral attachment and fusion. The DIII facilitates cell receptor recognition, and includes several ZIKV antibody epitopes. The DIII is also considered as an antigenic target for ZIKV-neutralising antibodies. Understanding the flexibility and dynamical behaviour of ZIKV DIII can aid the design of vaccines against ZIKV. Using molecular dynamics (MD) simulations, the flexibility of DIII and its epitopes were characterised. The final structure from a 100 ns-long MD simulation was docked to anti-DIII ZIKV Fabs (ZV67 and ZV64). Interestingly, the analysis of the MD simulations revealed that the residues of the C-C’ loop and the ABDE sheet epitopes (epitopes for moderately neutralising ZV64 and weakly neutralising ZV2 mAbs, respectively) were highly flexible, whereas the LR epitope for strongly neutralising ZV67 mAb was rigid.
DOI: 10.6084/m9.figshare.11971884
title: STHflowerVisitationMikkoPaajanen.xlsx

description: Data on flower visitation to Commidendrum robustum and C. rugosum capitula on St Helena island, South Atlantic Ocean. Based on time-lapse footage.
DOI: 10.6084/m9.figshare.11971875
title: Consistent sociality but flexible social associations across temporal and spatial foraging contexts in a colonial breeder

description: Association data for each association type (colony departure, colony return, commuting and foraging).<br>Colony_departures_assoc.csv & Colony_returns_assoc.csv: Data of individuals co-departing/co-returning the colony within a 3 min time window; indA and indB give the ID of the birds involved in the co-departure/co-return, tripA and tripB give the trip number of each individuals trip. date_timeA and datetime_B give the time of colony departure/return for each individual. tdiff gives the difference in time between indA and indB departure/returns. diffangle gives the difference in travel angle between individuals. assoctype gives the type of association (departure or return).<br>Commuting_assoc.csv & Foraging_assoc.csv: datetime_start & datetime_end, give start and end times of the association. startdist and enddist give the distance between individuals at the start and end of the association. meanangle gives the mean difference in heading during commuting associations. interactionid gives an indentifier to each association. assoctype gives the type of association (commuting or foraging).<br>Location.strat.csv - gives the location based strategy of each individual (bay, swtich or strait).
DOI: 10.6084/m9.figshare.11971866
title: TWS_extension.mat

description: Terrestrial water storage dataset from 1982 to 2019. Units in cm.
DOI: 10.6084/m9.figshare.11971875.v1
title: Colony_departures_assocations.csv

description: Association data for each association type (colony departure, colony return, commuting and foraging).<br>Colony_departures_assoc.csv & Colony_returns_assoc.csv: Data of individuals co-departing/co-returning the colony within a 3 min time window; indA and indB give the ID of the birds involved in the co-departure/co-return, tripA and tripB give the trip number of each individuals trip. date_timeA and datetime_B give the time of colony departure/return for each individual. tdiff gives the difference in time between indA and indB departure/returns. diffangle gives the difference in travel angle between individuals. assoctype gives the type of association (departure or return).<br>Commuting_assoc.csv & Foraging_assoc.csv: datetime_start & datetime_end, give start and end times of the association. startdist and enddist give the distance between individuals at the start and end of the association. meanangle gives the mean difference in heading during commuting associations. interactionid gives an indentifier to each association. assoctype gives the type of association (commuting or foraging).<br>Location.strat.csv - gives the location based strategy of each individual (bay, swtich or strait).
DOI: 10.6084/m9.figshare.11971860
title: Steric Sea Level

description: Steric sea level dataset from 1982 to 2019 in units of cm.
DOI: 10.6084/m9.figshare.11971860.v1
title: Steric Sea Level

description: Steric sea level dataset from 1982 to 2019 in units of cm.
DOI: 10.6084/m9.figshare.11971755
title: Flowsquare Bone jam

description: replace the bc.bmp and grid.txt files of Flowsquare with these
DOI: 10.6084/m9.figshare.11971755.v1
title: Flowsquare Bone jam

description: replace the bc.bmp and grid.txt files of Flowsquare with these
DOI: 10.15131/shef.data.11971599
title: Scientific Dates for England's Field Systems

description: The ‘Scientific Dates for Field Systems in England’ project was completed during 2015-16 in a partnership between Historic England, the University of Sheffield and ArcHeritage, a commercial archaeological consultancy. The project’s aims were to: (a) produce a collated list of relevant scientific dates for field systems in England; (b) provide a constructive critique of fieldscape chronologies based on collated scientific dates; (c) recommend methodological enhancements and future research that arise from the project’s results. The project assessed the current understanding of the chronology of field systems of all periods in England. The focus of the work was on reviewing known dates for the activity of enclosure for agricultural purposes and aimed to review existing dates for fields of all periods drawn from published and unpublished sources. The project recorded 393 scientific dates from 120 excavated sites (‘site’ refers to the archaeologically investigated area, however large or small) using information from unpublished and published sources.<br>
DOI: 10.15131/shef.data.11971599.v1
title: Scientific Dates for England's Field Systems

description: The ‘Scientific Dates for Field Systems in England’ project was completed during 2015-16 in a partnership between Historic England, the University of Sheffield and ArcHeritage, a commercial archaeological consultancy. The project’s aims were to: (a) produce a collated list of relevant scientific dates for field systems in England; (b) provide a constructive critique of fieldscape chronologies based on collated scientific dates; (c) recommend methodological enhancements and future research that arise from the project’s results. The project assessed the current understanding of the chronology of field systems of all periods in England. The focus of the work was on reviewing known dates for the activity of enclosure for agricultural purposes and aimed to review existing dates for fields of all periods drawn from published and unpublished sources. The project recorded 393 scientific dates from 120 excavated sites (‘site’ refers to the archaeologically investigated area, however large or small) using information from unpublished and published sources.<br>
DOI: 10.6084/m9.figshare.11971461
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971461.v1
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971461.v2
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971356
title: L2 Section, Sample 58. 32 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 32 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br><br>There is a 3D VR model availablehttps://skfb.ly/6QVUD<br>
DOI: 10.6084/m9.figshare.11971461.v3
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971371
title: Matrix-Binding IL-12

description: Installing collagen affinity to IL-12 improves efficacy and toxicity of IL-12.
DOI: 10.6084/m9.figshare.11971461.v4
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971281
title: L2 Section, Sample 57. 86 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 86 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br>There is also a 3D VR model availablehttps://skfb.ly/6QVUA<br>
DOI: 10.6084/m9.figshare.11971461.v6
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11971461.v5
title: UNC-CH seafood forensics class red snapper study data

description: Meta-data for vendors from which red snapper samples were collected, and each sample sequence.
DOI: 10.6084/m9.figshare.11970531
title: L2 Section, Sample 53. 79 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 79 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11970531.v1
title: L2 Section, Sample 53. 79 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 79 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11970093
title: L2 Section, Sample 50. 88 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 88 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br>There is also a 3D VR model availablehttps://skfb.ly/6QVUw<br>
DOI: 10.6084/m9.figshare.11969256
title: L2 Section, Sample 49. 83 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 83 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11969130
title: L2 Section, Sample 48. 76 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 76 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11969124
title: L2 Section, Sample 46. 69 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 69 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br><br>There is a 3D VR model available toohttps://skfb.ly/6QVTL<br>
DOI: 10.6084/m9.figshare.11969085
title: L2 Section, Sample 42. 84 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 84 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br><br>
DOI: 10.6084/m9.figshare.11969085.v1
title: L2 Section, Sample 42. 84 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 84 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br><br>
DOI: 10.6084/m9.figshare.11969046
title: L2 Section, Sample 41. 84 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 84 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.<br>There is also a 3D VR model of this sample available <br>https://skfb.ly/6QVSY<br>
DOI: 10.6084/m9.figshare.11969037
title: L2 Section, Sample 38. 68 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 68 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11968962
title: L2 Section, Sample 33. 67 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 67 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11968956
title: L2 Section, Sample 26. 65 Year Old Female

description: A 3 mm thick para-sagittal slice of L2 vertebra from an 65 year old female embedded in PMMA then micro-milled block surfaces carbon coated for quantitative 20kV BSE SEM.<br><br>Later polished to remove coating and then imaged with high-contrast X-Ray Micro-tomography at 90 kV with 30 micron voxel size.
DOI: 10.6084/m9.figshare.11968905
title: Responsible Dog Ownership Workshop Evaluation Data

description: Randomised controlled trial data collected as part of an impact assessment for Responsible Dog Ownership workshops aiming to increase children's attitudes towards responsible ownership.<br>Data coded as 0/1: 0= No, 1= Yes
DOI: 10.6084/m9.figshare.11968692
title: MAG-01-vs-18-ISOLATES-PANGENOME

description: This data pack is suitable for anvi'o v6.1 or later.<br>This dataset contains anvi'o files for the pangenome shown in <b>Figure 3C</b> of Miyoshi and Miyoshi et al. (2020).<br>To visualize this pangenome interactively please run,<br>anvi-display-pan -p MAG-01-vs-18-ISOLATES-PAN.db -g MAG-01-vs-18-ISOLATES-GENOMES.db
DOI: 10.6084/m9.figshare.11968674
title: TARGET-MAGs-vs-INDEX-MAGs-PANGENOME

description: This data pack is suitable for anvi'o v6.1 or later.<br>This dataset contains anvi'o files for the pangenome shown in <b>Figure 3B</b> of Miyoshi and Miyoshi et al. (2020).<br>To visualize this pangenome interactively please run,<br>anvi-display-pan -p TARGET-MAGs-vs-INDEX-MAGs-PANGENOME-PAN.db -g TARGET-MAGs-vs-INDEX-MAGs-PANGENOME-GENOMES.db<br>
DOI: 10.6084/m9.figshare.11968584
title: Generic Conditions for Forecast Dominance

description: <b>Recent studies have analyzed whether one forecast method dominates another under a class of consistent scoring functions. While the existing literature focuses on empirical tests of forecast dominance, little is known about the theoretical conditions under which one forecast dominates another. To address this question, we derive a new characterization of dominance among forecasts of the mean functional. We present various scenarios under which dominance occurs. Unlike existing results, our results allow for the case that the forecasts’ underlying information sets are not nested, and allow for uncalibrated forecasts that suffer, for example, from model misspecification or parameter estimation error. We illustrate the empirical relevance of our results via data examples from finance and economics.</b>
DOI: 10.6084/m9.figshare.11968584.v2
title: Generic Conditions for Forecast Dominance

description: <b>Recent studies have analyzed whether one forecast method dominates another under a class of consistent scoring functions. While the existing literature focuses on empirical tests of forecast dominance, little is known about the theoretical conditions under which one forecast dominates another. To address this question, we derive a new characterization of dominance among forecasts of the mean functional. We present various scenarios under which dominance occurs. Unlike existing results, our results allow for the case that the forecasts’ underlying information sets are not nested, and allow for uncalibrated forecasts that suffer, for example, from model misspecification or parameter estimation error. We illustrate the empirical relevance of our results via data examples from finance and economics.</b>
DOI: 10.6084/m9.figshare.11968551
title: data_water-717367

description: Figure data for water-717367
DOI: 10.6084/m9.figshare.11968533
title: Supplementary Material for: In vitro Conversion into CD4<sup>+</sup>CD25<sup>+</sup>Foxp3<sup>+</sup> Induced Regulatory T Cells Is Reduced in Atopic Dermatitis Patients

description: <b><i>Background:</i></b> Atopic dermatitis (AD) is one of the most common inflammatory skin diseases, with an increasing incidence in clinical practice. AD models have demonstrated that TGF-β signaling is compromised in regulatory T cells (Tregs). <b><i>Objectives:</i></b> This study aimed to investigate the TGF-β-dependent in vitro conversion of CD4<sup>+</sup>CD25<sup>–</sup> T cells derived from AD-patients into CD4<sup>+</sup>CD25<sup>+</sup>Foxp3<sup>+</sup> induced Tregs (iTregs) in comparison to healthy controls. <b><i>Methods:</i></b> To analyze in vitro iTreg conversion, human CD4<sup>+</sup>CD25<sup>–</sup> T cells were cultured on anti-CD3-coated plates in the presence of TGF-β and IL-2 for up to 3 days. Consequently, the underlying mechanism of impaired CD4<sup>+</sup>CD25<sup>+</sup>Foxp3<sup>+</sup> iTreg generation was explored by focusing on TGF-β signaling. Finally, the functionality of iTregs was investigated. <b><i>Results:</i></b> Conversion of CD4<sup>+</sup>CD25<sup>–</sup>Foxp3<sup>–</sup> into CD4<sup>+</sup>CD25<sup>+</sup>Foxp3<sup>+</sup> iTregs was diminished in AD individuals. Impaired iTreg generation was accompanied by a reduced surface expression of GARP (glycoprotein A repetitions predominant), a marker for activated Tregs. A reduced expression of Smad3 mRNA was revealed in CD4<sup>+</sup>CD25<sup>–</sup> T cells. Interestingly, the suppressive quality of iTregs was found to be equal in cells derived from AD and healthy donors. <b><i>Conclusion:</i></b> The signaling effect of TGF-β receptors on the suppressor quality of iTreg conversion is conserved. Impaired iTreg generation might be a reason for the lack of immune suppression in AD patients and contributes to the chronicity of the disease.