cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25646/7676
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.12738749
title: Unusually paced life history strategies of marine megafauna drive atypical sensitivities to environmental variability

description: Model parameters, simulation code to create the figures of the manuscript: Unusually paced life history strategies of marine megafauna drive atypical sensitivities to environmental variability <br>Isabel M. Smallegange, Marta Flotats Avilés, Kim Eustache
DOI: 10.5519/qd.m8jq963n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (4677345 records)
DOI: 10.6084/m9.figshare.13286048
title: Supplementary Material for: Fertility Relevance Probability Analysis Shortlists Genetic Markers for Male Fertility Impairment

description: Impairment of male fertility is one of the major public health issues worldwide. Nevertheless, genetic causes of male sub- and infertility can often only be suspected due to the lack of reliable and easy-to-use routine tests. Yet, the development of a marker panel is complicated by the large quantity of potentially predictive markers. Actually, hundreds or even thousands of genes could have fertility relevance. Thus, a systematic method enabling a selection of the most predictive markers out of the many candidates is required. As a criterion for marker selection, we derived a gene-specific score, which we refer to as fertility relevance probability (FRP). For this purpose, we first categorized 2,753 testis-expressed genes as either candidate markers or non-candidates, according to phenotypes in male knockout mice. In a parallel approach, 2,502 genes were classified as candidate markers or non-candidates based on phenotypes in men. Subsequently, we conducted logistic regression analyses with evolutionary rates of genes (<i>dN</i>/<i>dS</i>), transcription levels in testis relative to other organs, and connectivity of the encoded proteins in a protein-protein interaction network as covariates. In confirmation of the procedure, FRP values showed the expected pattern, thus being overall higher in genes with known relevance for fertility than in their counterparts without corresponding evidence. In addition, higher FRP values corresponded with an increased dysregulation of protein abundance in spermatozoa of 37 men with normal and 38 men with impaired fertility. Present analyses resulted in a ranking of genes according to their probable predictive power as candidate markers for male fertility impairment. Thus, <i>AKAP4</i>, <i>TNP1</i>, <i>DAZL</i>, <i>BRDT</i>, <i>DMRT1</i>, <i>SPO11</i>, <i>ZPBP</i>, <i>HORMAD1</i>, and <i>SMC1B</i> are prime candidates toward a marker panel for male fertility impairment. Additional candidate markers are <i>DDX4</i>, <i>SHCBP1L</i>, <i>CCDC155</i>, <i>ODF1</i>, <i>DMRTB1</i>, <i>ASZ1</i>, <i>BOLL</i>, <i>FKBP6</i>, <i>SLC25A31</i>, <i>PRSS21</i>, and <i>RNF17</i>. FRP inference additionally provides clues for potential new markers, thereunder <i>TEX37</i> and <i>POU4F2</i>. The results of our logistic regression analyses are freely available at the PreFer Genes website (https://prefer-genes.uni-mainz.de/).
DOI: 10.6084/m9.figshare.13286048.v1
title: Supplementary Material for: Fertility Relevance Probability Analysis Shortlists Genetic Markers for Male Fertility Impairment

description: Impairment of male fertility is one of the major public health issues worldwide. Nevertheless, genetic causes of male sub- and infertility can often only be suspected due to the lack of reliable and easy-to-use routine tests. Yet, the development of a marker panel is complicated by the large quantity of potentially predictive markers. Actually, hundreds or even thousands of genes could have fertility relevance. Thus, a systematic method enabling a selection of the most predictive markers out of the many candidates is required. As a criterion for marker selection, we derived a gene-specific score, which we refer to as fertility relevance probability (FRP). For this purpose, we first categorized 2,753 testis-expressed genes as either candidate markers or non-candidates, according to phenotypes in male knockout mice. In a parallel approach, 2,502 genes were classified as candidate markers or non-candidates based on phenotypes in men. Subsequently, we conducted logistic regression analyses with evolutionary rates of genes (<i>dN</i>/<i>dS</i>), transcription levels in testis relative to other organs, and connectivity of the encoded proteins in a protein-protein interaction network as covariates. In confirmation of the procedure, FRP values showed the expected pattern, thus being overall higher in genes with known relevance for fertility than in their counterparts without corresponding evidence. In addition, higher FRP values corresponded with an increased dysregulation of protein abundance in spermatozoa of 37 men with normal and 38 men with impaired fertility. Present analyses resulted in a ranking of genes according to their probable predictive power as candidate markers for male fertility impairment. Thus, <i>AKAP4</i>, <i>TNP1</i>, <i>DAZL</i>, <i>BRDT</i>, <i>DMRT1</i>, <i>SPO11</i>, <i>ZPBP</i>, <i>HORMAD1</i>, and <i>SMC1B</i> are prime candidates toward a marker panel for male fertility impairment. Additional candidate markers are <i>DDX4</i>, <i>SHCBP1L</i>, <i>CCDC155</i>, <i>ODF1</i>, <i>DMRTB1</i>, <i>ASZ1</i>, <i>BOLL</i>, <i>FKBP6</i>, <i>SLC25A31</i>, <i>PRSS21</i>, and <i>RNF17</i>. FRP inference additionally provides clues for potential new markers, thereunder <i>TEX37</i> and <i>POU4F2</i>. The results of our logistic regression analyses are freely available at the PreFer Genes website (https://prefer-genes.uni-mainz.de/).
DOI: 10.5519/qd.p5mpo3nw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.13286090
title: Supplementary Material for: Circulating Levels of Dickkopf-Related Protein 1 Decrease as Measured GFR Declines and Are Associated with PTH Levels

description: <b><i>Background:</i></b> The Wnt/β-catenin pathway has been implicated in the development of adynamic bone disease in early-stage chronic kidney disease (CKD). Dickkopf-related protein 1 (DKK1) and sclerostin are antagonists of the Wnt/β-catenin pathway yet have not been widely used as clinical indicators of bone disease. This study characterized levels of DKK1, sclerostin, and other biomarkers of mineral metabolism in participants across a spectrum of inulin-measured glomerular filtration rate (GFR). <b><i>Methods:</i></b> GFR was measured by urinary inulin clearance (mGFR) in 90 participants. Blood samples were obtained for measurement of circulating DKK1, sclerostin, fibroblast growth factor 23 (FGF-23), parathyroid hormone (PTH), calcium, phosphate, α-klotho, and vitamin D metabolites including 25-hydroxyvitamin D<sub>3</sub> and 1,25-dihydroxyvitamin D<sub>3</sub>. Spearman correlations and linear regressions were used where appropriate to examine the associations between measured values. <b><i>Results:</i></b> The median [IQR] age was 64 years [53.0–71.0], and the median [IQR] mGFR was 32.6 [21.7–60.6] mL/min. DKK1 decreased (<i>r</i> = 0.6, <i>p</i> &lt; 0.001) and sclerostin increased (<i>r</i> = −0.4, <i>p</i> &lt; 0.001) as kidney function declined, and both were associated with phosphate, PTH, FGF-23, and 1,25-dihydroxyvitamin D<sub>3</sub> in the unadjusted analysis. After adjustment for age and mGFR, DKK1 remained significantly associated with PTH. <b><i>Conclusion:</i></b> The results of this study demonstrate opposing trends in Wnt/β-catenin pathway inhibitors, DKK1 and sclerostin, as mGFR declines. Unlike sclerostin, DKK1 levels decreased significantly as mGFR declined and was independently associated with PTH. Future studies should determine whether measurement of Wnt signaling inhibitors may be useful in predicting bone histomorphometric findings and important clinical outcomes in patients with CKD.
DOI: 10.5519/0076309
title: Crowdsourcing the collection

description: Live transcriptions from Science Uncovered 2014
DOI: 10.6084/m9.figshare.13286108
title: Supplementary Material for: Association of Admission Hyperglycemia with Clinical Outcomes in Japanese Patients with Acute Large Vessel Occlusion Stroke: A post hoc Analysis of the Recovery by Endovascular Salvage for Cerebral Ultra-Acute Embolism Japan Registry 2

description: <b><i>Introduction:</i></b> Admission hyperglycemia is an indicator of poor functional prognosis in acute stroke, but investigations of its prevalence and effects on the outcomes of acute large vessel occlusion in real-world, large-scale studies are limited, especially in Asian population. <b><i>Objective:</i></b> We aimed to elucidate the relationship between admission hyperglycemia and outcomes in a prospective multicenter registry in Japan. <b><i>Methods:</i></b> We analyzed data from the Recovery by Endovascular Salvage for Cerebral Ultra-Acute Embolism (RESCUE) Japan Registry 2, which was a prospective, multicenter registry that enrolled patients from 46 centers in Japan. Admission hyperglycemia was defined as blood glucose level &gt;140 mg/dL. The relationships between clinical outcomes and admission hyperglycemia were analyzed in all 1,932 assessable patients. A favorable functional outcome, defined as a modified Rankin Scale score of 0–2 at day 90, as well as mortality within 90 days and symptomatic intracranial hemorrhage (SICH) within 72 h, was analyzed. We performed subgroup analyses of the adjusted variables to investigate the association between hyperglycemia and favorable outcome in relation to each variable. <b><i>Results:</i></b> Admission hyperglycemia was present in 687 (35.6%) of the assessable patients and in 420 (26.9%) of the 1,561 patients without diabetes. A favorable outcome was significantly less frequent in the hyperglycemia group than in the no-hyperglycemia group (33.2% vs. 47.6%, adjusted odds ratio [OR]: 0.60, 95% confidence interval [CI]: 0.47–0.76). The mortality rates were 12.8% and 6.8% in the hyperglycemia and no-hyperglycemia groups, respectively. The incidence of SICH within 72 h was higher in the hyperglycemia group than in the no-hyperglycemia group (4.4% vs. 1.9%, adjusted OR: 2.54, 95% CI: 1.36–4.82). Hyperglycemia was associated with unfavorable outcomes in almost all subgroups. <b><i>Conclusions:</i></b> Admission hyperglycemia in Japanese patients with large vessel occlusion stroke is associated with an unfavorable functional outcome at 90 days, mortality within 90 days, and the occurrence of SICH within 72 h.
DOI: 10.5519/0077153
title: Natural History Museum Picture Library

description: Explore our comprehensive range of natural history images. From specimens to skins and skeletons, mammals, maps and microscopic views of the natural world, a unique resource of over 50,000 images available to license and download.
DOI: 10.6084/m9.figshare.13286108.v1
title: Supplementary Material for: Association of Admission Hyperglycemia with Clinical Outcomes in Japanese Patients with Acute Large Vessel Occlusion Stroke: A post hoc Analysis of the Recovery by Endovascular Salvage for Cerebral Ultra-Acute Embolism Japan Registry 2

description: <b><i>Introduction:</i></b> Admission hyperglycemia is an indicator of poor functional prognosis in acute stroke, but investigations of its prevalence and effects on the outcomes of acute large vessel occlusion in real-world, large-scale studies are limited, especially in Asian population. <b><i>Objective:</i></b> We aimed to elucidate the relationship between admission hyperglycemia and outcomes in a prospective multicenter registry in Japan. <b><i>Methods:</i></b> We analyzed data from the Recovery by Endovascular Salvage for Cerebral Ultra-Acute Embolism (RESCUE) Japan Registry 2, which was a prospective, multicenter registry that enrolled patients from 46 centers in Japan. Admission hyperglycemia was defined as blood glucose level &gt;140 mg/dL. The relationships between clinical outcomes and admission hyperglycemia were analyzed in all 1,932 assessable patients. A favorable functional outcome, defined as a modified Rankin Scale score of 0–2 at day 90, as well as mortality within 90 days and symptomatic intracranial hemorrhage (SICH) within 72 h, was analyzed. We performed subgroup analyses of the adjusted variables to investigate the association between hyperglycemia and favorable outcome in relation to each variable. <b><i>Results:</i></b> Admission hyperglycemia was present in 687 (35.6%) of the assessable patients and in 420 (26.9%) of the 1,561 patients without diabetes. A favorable outcome was significantly less frequent in the hyperglycemia group than in the no-hyperglycemia group (33.2% vs. 47.6%, adjusted odds ratio [OR]: 0.60, 95% confidence interval [CI]: 0.47–0.76). The mortality rates were 12.8% and 6.8% in the hyperglycemia and no-hyperglycemia groups, respectively. The incidence of SICH within 72 h was higher in the hyperglycemia group than in the no-hyperglycemia group (4.4% vs. 1.9%, adjusted OR: 2.54, 95% CI: 1.36–4.82). Hyperglycemia was associated with unfavorable outcomes in almost all subgroups. <b><i>Conclusions:</i></b> Admission hyperglycemia in Japanese patients with large vessel occlusion stroke is associated with an unfavorable functional outcome at 90 days, mortality within 90 days, and the occurrence of SICH within 72 h.
DOI: 10.5519/0089591
title: Natural History Museum Library and Archives

description: Explore one of the world's finest collections of natural history literature, artwork, photographs and manuscripts.
DOI: 10.5519/0043878
title: Notes From Nature

description: Contributor statistics from the Museum's Notes From Nature Ornithological project, transcribing bird register information from 1837 to 1990.
DOI: 10.5519/0036449
title: IMp: The customizable LEGO® Pinned Insect Manipulator (Annotated building instructions)

description: Dupont et al. 2015. IMp: The customizable LEGO® Pinned Insect Manipulator. Supplement.
DOI: 10.5519/0001640
title: A bibliography for the taxonomy of extant and extinct Scleractinia

description: The bibliography includes works concerning the nomenclature and taxonomy of Scleractinia, in particular those containing acts of nomenclature. The list is compiled as part of the Corallosphere project [(corallosphere.org)](http://www.corallosphere.org), an online revision of the genera of Scleractinia. The bibliography is not comprehensive, and continues to be updated with older and newly published works. The most recent version can be found by following the "Corallosphere" group at Mendeley.com (http://www.mendeley.com/groups/2698761/corallosphere). Danwei Huang ( Department of Biological Sciences, National University of Singapore, Singapore) Ann F. Budd (Department of Geoscience, University of Iowa, USA) Kenneth G. Johnson (Department of Earth Sciences, Natural History Museum London, UK)
DOI: 10.5519/0071217
title: Molecular phylogeny of the Bothriocephalidea (Cestoda): molecular data challenge morphology-based classification

description: In this study, the relationships of the cestode order Bothriocephalidea, parasites of marine and freshwater bony fish, were assessed using multi-gene molecular phylogenetic analyses. The dataset included 60 species, covering about 70% of currently recognised genera, a sample of bothriocephalidean biodiversity gathered through an intense 15-year effort. The order, while being monophyletic, includes three non-monophyletic and one monophyletic family. Bothriocephalidae is monophyletic and forms the most derived lineage of the order, comprising a single freshwater and several marine clades. Biogeographic patterns within the freshwater clade are indicative of past radiations having occurred in Africa and North America. The earliest diverging lineages of the order are formed of a paraphyletic Triaenophoridae. The Echinophallidae, consisting nearly exclusively of parasites of bathypelagic fish, was also resolved as paraphyletic to the inclusion of the Bothriocephalidae. Philobythoides sp., the only representative of the Philobythiidae, another family of parasites of bathypelagic fish, formed a sister group to the genus Eubothrium, the latter forming one of the lineages of the paraphyletic Triaenophoridae. Because of the weak statistical support for most of the basal nodes of the Triaenophoridae and Echinophallidae, as well as the lack of obvious morphological synapomorphies shared by taxa forming statistically supported lineages, the current family-level classification is provisionally retained, with the exception of the family Philobythiidae, which is now recognised as a synonym of the Triaenophoridae. In addition, Schyzocotyle Akhmerov, 1960 is resurrected to accommodate the veterinary important, invasive Asian fish tapeworm, S. acheilognathi (Yamaguti, 1934) n. comb. (syn. Bothriocephalus acheilognathi Yamaguti, 1934) and S. nayaruensis (Malhotra, 1983) n. comb. The genus is morphologically characterised by a wide, heart-shaped scolex with narrow and deep bothria.
DOI: 10.5519/0065571
title: Supporting information for: Collins RA, Britz R, Rüber L (2015)

description: Supporting information for: Collins RA, Britz R, Rüber L (2015). Phylogenetic systematics of leaffishes (Teleostei: Polycentridae, Nandidae). J. Zool. Syst. Evol. Res.
DOI: 10.5519/0036379
title: Notes from Nature crowd sourcing raw data set

description: Raw transcription data from the Notes from Nature crowd sourcing site for the ornithology collections of the NHM
DOI: 10.5519/0087222
title: Biodiversity Heritage Library

description: Natural History Museum biodiversity literature published to the Biodiversity Heritage Library.
DOI: 10.5519/0056966
title: Pushing the limits – two new species of Pteromalus (Hymenoptera, Chalcidoidea, Pteromalidae) from Central Europe with remarkable morphology

description: Two new species, Pteromalus briani sp. n. and P. janstai sp. n., with unusual characters are described from the Central Plateau and the Alps in Switzerland, respectively. P. briani sp. n. is remarkable in that it has the metatibia quite abruptly expanded before the middle. This type of modification of the hind tibia is unique within the Pteromalidae and probably also the entire Chalcidoidea. It is also very rare in other parasitic wasps, where it is suspected to be associated with pheromone glands. The species is a gregarious endoparasitoid of pupae of Vanessa atalanta (Linnaeus) and Aglais urticae (Linnaeus), two common butterflies (Lepidoptera: Nymphalidae) in Europe. It is furthermore a koinobiont parasitoid ovipositing in an early larval stage of the host. The other species, P. janstai sp. n., shows a flattened mesosoma. A dorsoventrally depressed body is a unique feature within the genus Pteromalus, but known from a number species in unrelated genera and subfamilies. The two records demonstrate that it is possible to discover entirely new species with extraordinary characters even in one of the taxonomically most thoroughly explored parts of the world.
DOI: 10.5519/0068733
title: Schizorhiza stromeri (Batoidea; Chondrichthyes) rostrum with saw-teeth

description: This movie shows the developing saw-teeth along the cartilaginous rostrum of the Cretaceous batoid ray Schizorhiza stromeri. 3D rendering performed with Avizo.
DOI: 10.5519/0085784
title: Development of the synarcual in the Elephant sharks (Holocephali; Chondrichthyes): implications for vertebral formation and fusion

description: Data accompanying PLoS paper, Johanson Z,Boisvert, C, Maksimenko A, Currie, P and Trinajstic K. Development of the synarcual in the Elephant sharks (Holocephali; Chondrichthyes): implications for vertebral formation and fusion
DOI: 10.5519/0013010
title: BioAcoustica: Talks: Frederick W. Edwards Annual Lectures

description: Recordings of the annual Frederick W. Edwards Lecture held by the Natural History Museum Sound Archive. Digitised by the BioAcoustica project.
DOI: 10.5519/0025140
title: BioAcoustica: Talks: Insect Natural History

description: Recordings of the Insect Natural History lecture series by the Department of Entomology, Natural History Museum. Recordings held by the Natural History Museum Sound Archive. Digitised by the BioAcoustica project.
DOI: 10.5519/0025818
title: Chemistry samples Central System carbonate clays

description: Complete chemical data of the dolomite-clay sediments from the Central System in Spain. Pedogenic and lagoonal environments generating illitization of kaolinite.
DOI: 10.5519/0039503
title: Solanum section Aculeigerum

description: Collections used in the preparation of the publication of a taxonomic revision of Solanum section Aculeigerum. The data are presented in two formats: 1) a static pdf file of an index to numbered collections, and 2) a searchable csv file of all collection data. Publication citation: Clark JL, Bohs L, Nee M and Knapp S (2015) A Revision of _Solanum_ section _Aculeigerum_ (the _Solanum wendlandii_ group, Solanaceae). _Systematic Botany_ 40(4): 1102-1136. (published online 15 December 2015). __Abstract of publication__: _Solanum_ section _Aculeigerum_ Seithe (the _Solanum wendlandii_ group, Solanaceae) comprises eight species ranging from Mexico and Central America to Ecuador and Peru with one species in southeastern Brazil, Paraguay and northern Argentina. One species, _Solanum wendlandii_, is commonly cultivated worldwide in tropical and subtropical regions, and one new species from southern Mexico, _Solanum triunfense_ S. Knapp sp. nov., is described here. Members of section _Aculeigerum_ are differentiated from other sections of _Solanum_ by a combination of plurifoliate sympodial units, branched inflorescences, presence of prickles coupled with absence of stellate trichomes, and a vine-like habit. Unlike most other prickly species of _Solanum_, which are placed into subgenus _Leptostemonum_, they lack stellate hairs, and phylogenetic studies suggest that the section is one of several potential sister groups for the spiny solanums. A key, descriptions, habitat and distribution data, preliminary conservation assessments, specimens examined and illustrations are provided for all species in section _Aculeigerum_. Lectotypes are designated for the following five names: _S. aculeolatum_ M. Martens & Galeotti, _S. mazatenangense_ Coult. & Donn. Sm., _S. molinarum_ J. L. Gentry, _S. pachyandrum_ Bitter, and _S. sagranum_ A. Rich., and neotypes are designated for _S. glaucescens_ Zucc. and _S. wendlandii_ Hook. f.
DOI: 10.5519/0059533
title: Specimens of the Dulcamaroid Clade of Solanum

description: This dataset is a static xls file of all specimens examined for the publication below. These data are updated on the web resource Solanaceae Source (www.solanaceaesource.org). Knapp S (2013) A revision of the Dulcamaroid Clade of _Solanum_ L. (Solanaceae). _PhytoKeys_ 22: 1-432. doi: 10.3897/phytokeys.22.4041
DOI: 10.5519/0002120
title: Burrow casts of the mole cricket genus Gryllotalpa Latreille, 1802

description: 3D scans of the burrows of _Gryllotalpa vineae_ Bennet-Clark, 1970 and _Gryllotalpa gryllotalpa_ (Linnaeus, 1758).
DOI: 10.5519/0009364
title: The phylogeny of the digenean family Opecoelidae Ozaki, 1925: molecular phylogenetic inference and the value of morphological characters

description: To be added
DOI: 10.5519/0060332
title: NightLife

description: Circuit board designs for the NightLife project to create a cheap, robust and open hardware LED light trap for aquatic insects, and raw data from the NightLife publication.