cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9r8ybv
title: Occurrence Download

description: A dataset containing 562065 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Heliotropium ramosissimum (Lehm.) Sieber ex A.DC., Trichodesma africanum (L.) R.Br., Aerva javanica (Burm.fil.) Juss., Desmodium ospriostreblum Chiov., Indigofera cordifolia B.Heyne ex Roth, Tephrosia bracteolata Guill. & Perr., Leucas martinicensis (Jacq.) R.Br., Sesamum radiatum Schumach. & Thonn., Abutilon ramosum (Cav.) Guill., Melhania ovata (Cav.) Spreng., Corchorus trilocularis L., Polygala erioptera DC., Dicliptera verticillata (Forssk.) C.Chr., Dicliptera paniculata (Forssk.) I.Darbysh., Ipomoea eriocarpa R.Br., Cuscuta hyalina Roth, Datura ferox L., Solanum melongena subsp. cumingii (Dunal) J.Samuel, Bulbostylis hispidula (Vahl) R.W.Haines, Sporobolus molleri Hack., Blumea lacera (Burm.fil.) DC., Delilia biflora (L.) Kuntze, Sclerocarpus africanus Jacq. ex Murray, Vernonia colorata (Willd.) Drake, Vernonia galamensis (Cass.) Less., Wahlenbergia lobelioides (L.f.) Link, Cleomaceae, Zaleya pentandra (L.) C.Jeffrey, Cucumis ficifolius A.Rich., Chamaecrista mimosoides (L.) Greene, Grona hirta (Guill. & Perr.) H.Ohashi & K.Ohashi, Sesbania pachycarpa DC., Zornia glochidiata Rchb. ex DC., Vachellia nilotica (L.) P.J.H.Hurter & Mabb., Galium rotundifolium L., Kohautia attenuata (Willd.) I.M.Turner, Kohautia tenuis (Bowdich) Mabb., Oldenlandia herbacea (L.) Roxb., Hibiscus physaloides Guill. & Perr., Spondias mombin Jacq., Citrus ×limon (L.) Osbeck, Ipomoea coptica (L.) Roth, Ipomoea L., Ficus sur Forssk., Ficus sycomorus L., Urochloa xantholeuca (Hack.) H.Scholz, Trichanthecium tenellum (Lam.) Zuloaga & Morrone, Ambrosia maritima L., Boerhavia repens L., Acalypha crenata Hochst. ex A.Rich.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 562065 records from 2007 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014536-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3yg5gc
title: Occurrence Download

description: A dataset containing 260 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Human Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gorilla I.Geoffroy Saint-Hilaire, 1852",
 "Year 1970-2021"
 ]
}

 The dataset includes 260 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0269673-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5f9k8
title: Occurrence Download

description: A dataset containing 745 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((101.66308 33.95742,100.59433 29.85117,103.57559 25.35117,106.44433 20.23242,113.86934 20.85117,122.86933 22.93242,121.51934 37.66992,101.66308 33.95742))",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus massoniana Lamb."
 ]
}

 The dataset includes 745 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034131-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ylpiol
title: Occurrence Download

description: A dataset containing 59504 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "Year 2000-2018",
 "Geometry POLYGON((-101.57509 22.39369,-101.63452 21.80031,-101.71692 21.2689,-101.64001 20.63278,-100.33264 20.2622,-99.87671 20.71502,-99.59656 21.91247,-100.25574 22.23826,-101.57509 22.39369))",
 "HasCoordinate is true",
 "TaxonKey is Animalia",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59504 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010030-180730143533302/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2gpa3v
title: Occurrence Download

description: A dataset containing 845 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Achatocarpus praecox Griseb."
 ]
}

 The dataset includes 845 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0271287-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2gm37
title: Occurrence Download

description: A dataset containing 14068810 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Colombia"
 ]
}

 The dataset includes 14068810 records from 3080 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001899-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5517/cc4ng8h
title: CCDC 138826: Experimental Crystal Structure Determination

description: Related Article: H.Adams, R.Bastida, D.E.Fenton, A.Macias, S.E.Spey, L.Valencia|1999|Inorg.Chem.Commun.|2|513|doi:10.1016/S1387-7003(99)00134-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4njjt
title: CCDC 138896: Experimental Crystal Structure Determination

description: Related Article: R.Keuleers, G.S.Papaefsthathiou, C.P.Raptopoulou, V.Tangoulis, H.O.Desseyn, S.P.Perlepes|1999|Inorg.Chem.Commun.|2|472|doi:10.1016/S1387-7003(99)00124-0
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4nf8g
title: CCDC 138795: Experimental Crystal Structure Determination

description: Related Article: A.A.La Pensee, S.J.Higgins, C.A.Stuart, J.F.Bickley|1999|Inorg.Chem.Commun.|2|524|doi:10.1016/S1387-7003(99)00147-1
description: Related Article: A.A.La Pensee, J.Bickley, S.J.Higgins, M.Marcaccio, F.Paolucci, S.Roffia, J.M.Charnock|2002|J.Chem.Soc.,Dalton Trans.||4095|doi:10.1039/b206234h
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc48zhv
title: CCDC 127797: Experimental Crystal Structure Determination

description: Related Article: G.W.Orr, L.J.Barbour, J.L.Atwood|1999|Science|285|1049|doi:10.1126/science.285.5430.1049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc46h71
title: CCDC 125402: Experimental Crystal Structure Determination

description: Related Article: H.O.Davies, T.J.Leedham, A.C.Jones, P.O'Brien, A.J.P.White, D.J.Williams|1999|Polyhedron|18|3165|doi:10.1016/S0277-5387(99)00236-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc48zjw
title: CCDC 127798: Experimental Crystal Structure Determination

description: Related Article: G.W.Orr, L.J.Barbour, J.L.Atwood|1999|Science|285|1049|doi:10.1126/science.285.5430.1049
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc46h82
title: CCDC 125403: Experimental Crystal Structure Determination

description: Related Article: H.O.Davies, T.J.Leedham, A.C.Jones, P.O'Brien, A.J.P.White, D.J.Williams|1999|Polyhedron|18|3165|doi:10.1016/S0277-5387(99)00236-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc46h93
title: CCDC 125404: Experimental Crystal Structure Determination

description: Related Article: H.O.Davies, T.J.Leedham, A.C.Jones, P.O'Brien, A.J.P.White, D.J.Williams|1999|Polyhedron|18|3165|doi:10.1016/S0277-5387(99)00236-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc42cvd
title: CCDC 121453: Experimental Crystal Structure Determination

description: Related Article: F.Demartin, F.A.Devillanova, A.Garau, F.Isaia, V.Lippolis, G.Verani|1999|Polyhedron|18|3107|doi:10.1016/S0277-5387(99)00227-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc46hb4
title: CCDC 125405: Experimental Crystal Structure Determination

description: Related Article: H.O.Davies, T.J.Leedham, A.C.Jones, P.O'Brien, A.J.P.White, D.J.Williams|1999|Polyhedron|18|3165|doi:10.1016/S0277-5387(99)00236-3
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zpwm
title: CCDC 118881: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc42cwf
title: CCDC 121454: Experimental Crystal Structure Determination

description: Related Article: F.Demartin, F.A.Devillanova, A.Garau, F.Isaia, V.Lippolis, G.Verani|1999|Polyhedron|18|3107|doi:10.1016/S0277-5387(99)00227-2
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zpxn
title: CCDC 118882: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zq1t
title: CCDC 118886: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zpyp
title: CCDC 118883: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zpzq
title: CCDC 118884: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc3zq0s
title: CCDC 118885: Experimental Crystal Structure Determination

description: Related Article: U.Abram, R.Alberto, J.R.Dilworth, Y.Zheng, K.Ortner|1999|Polyhedron|18|2995|doi:10.1016/S0277-5387(99)00216-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc4n2c6
title: CCDC 138457: Experimental Crystal Structure Determination

description: Related Article: A.McAuley, S.Subramanian, M.J.Zaworotko, K.Biradha|1999|Inorg.Chem.|38|5078|doi:10.1021/ic9904844
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.ayqjgj
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Machilus holadena"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008134-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2c5zfw
title: Occurrence Download

description: A dataset containing 531108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Labrisomus pomaspilus, Labrisomus socorroensis, Labrisomus xanti, Labroides bicolor, Labroides dimidiatus, Labroides pectoralis, Labroides phthirophagus, Labroides rubrolabiatus, Labropsis alleni, Labropsis australis, Labropsis manabei, Labropsis micronesica, Labropsis polynesica, Labropsis xanthonota, Labrus bergylta, Labrus mixtus, Lachnolaimus maximus, Lactophrys bicaudalis, Lactophrys trigonus, Lactophrys triqueter, Lactoria cornuta, Lactoria diaphana, Lactoria fornasini, Lagocephalus lunaris, Lagocephalus sceleratus, Lagocephalus spadiceus, Lagodon rhomboides, Laiphognathus longispinis, Laiphognathus multimaculatus, Lappanella fasciata, Larabicus quadrilineatus, Lateolabrax japonicus, Lates calcarifer, Lebetus guilleti, Lebetus scorpioides, Leiuranus semicinctus, Lepadichthys caritus, Lepadichthys coccinotaenia, Lepadichthys ctenion, Lepadichthys erythraeus, Lepadichthys frenatus, Lepadichthys minor, Lepadichthys sandaracatus, Lepadichthys springeri, Lepadogaster candolii, Lepadogaster purpurea, Lepidoblennius haplodactylus, Lepidonectes clarkhubbsi, Lepidonectes corallicola, Lepidozygus tapeinosoma, Lepophidium jeannae, Leptojulis chrysotaenia, Leptojulis cyanopleura, Leptojulis lambdastigma, Leptojulis polylepis, Leptoscarus vaigiensis, Lesueurigobius friesii, Lesueurigobius koumansi, Lesueurigobius sanzi, Lesueurigobius suerii, Lethrinus amboinensis, Lethrinus atkinsoni, Lethrinus atlanticus, Lethrinus borbonicus, Lethrinus crocineus, Lethrinus enigmaticus, Lethrinus erythracanthus, Lethrinus erythropterus, Lethrinus genivittatus, Lethrinus haematopterus, Lethrinus harak, Lethrinus laticaudis, Lethrinus lentjan, Lethrinus mahsena, Lethrinus microdon, Lethrinus miniatus, Lethrinus nebulosus, Lethrinus obsoletus, Lethrinus olivaceus, Lethrinus ornatus, Lethrinus ravus, Lethrinus reticulatus, Lethrinus rubrioperculatus, Lethrinus semicinctus, Lethrinus variegatus, Lethrinus xanthochilus, Leurochilus acon, Limnichthys fasciatus, Limnichthys nitidus, Liobranchia stria, Liocranium praepositum, Liopropoma aberrans, Liopropoma africanum, Liopropoma aurora, Liopropoma carmabi, Liopropoma collettei, Liopropoma eukrines, Liopropoma fasciatum, Liopropoma flavidum, Liopropoma japonicum)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 531108 records from 690 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008111-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11262610
title: Raw ptychography data for manuscript with title 'Multiplexing limitis in ptychography'

description: - Given are the HDF files containing the raw diffraction patterns, and the reconstructed files.- The metadata for the reconstruction of each dataset is stored in the raw files, and in the reconstructed files- For each scenario, the Fourier ring correlation (FRC) was calculated against the reconstruction with a single beam as reference, and against the corresponding region for the simulated dataset.

The reconstruction of these datasets was carried out with ptylab:Loetgering, L., Du, M., Boonzajer Flaes, D., Aidukas, T., Wechsler, F., Penagos Molina, D. S., Rose, M., Pelekanidis, A., Eschen, W., Hess, J., Wilhein, T., Heintzmann, R., Rothhardt, J., & Witte, S. (2023). PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography. In Optics Express (Vol. 31, Number 9, pp. 13763–13797).Zenodo. https://doi.org/10.5281/zenodo.8287047Github: https://github.com/PtyLab/PtyLab.py

EDIT:The first version of this repository corresponds to the datasets used in the preprint:Molina, Daniel Penagos; Eschen, Wilhelm; Liu, Chang; Limpert, Jens; Rothhardt, Jan (2024). Multiplexing information limits in ptychography. Optica Open. Preprint. https://doi.org/10.1364/opticaopen.25941427.v2

A second set of datasets was added. These correspond to the experimental results in the final version of the published paper:Daniel S. Penagos Molina, Wilhelm Eschen, Chang Liu, Jens Limpert, and Jan Rothhardt, "Multiplexing information limits in multi-beam ptychography," Opt. Express 33, 12925-12938 (2025)

- Data were measured at the Institute of Applied Physics in Jena.

Please contact me (santiago.penagos@uni-jena.de) for additional support.
DOI: 10.5281/zenodo.16263064
title: Raw ptychography data for manuscript with title 'Multiplexing limitis in ptychography'

description: - Given are the HDF files containing the raw diffraction patterns, and the reconstructed files.- The metadata for the reconstruction of each dataset is stored in the raw files, and in the reconstructed files- For each scenario, the Fourier ring correlation (FRC) was calculated against the reconstruction with a single beam as reference, and against the corresponding region for the simulated dataset.

The reconstruction of these datasets was carried out with ptylab:Loetgering, L., Du, M., Boonzajer Flaes, D., Aidukas, T., Wechsler, F., Penagos Molina, D. S., Rose, M., Pelekanidis, A., Eschen, W., Hess, J., Wilhein, T., Heintzmann, R., Rothhardt, J., & Witte, S. (2023). PtyLab.m/py/jl: a cross-platform, open-source inverse modeling toolbox for conventional and Fourier ptychography. In Optics Express (Vol. 31, Number 9, pp. 13763–13797).Zenodo. https://doi.org/10.5281/zenodo.8287047Github: https://github.com/PtyLab/PtyLab.py

EDIT:The first version of this repository corresponds to the datasets used in the preprint:Molina, Daniel Penagos; Eschen, Wilhelm; Liu, Chang; Limpert, Jens; Rothhardt, Jan (2024). Multiplexing information limits in ptychography. Optica Open. Preprint. https://doi.org/10.1364/opticaopen.25941427.v2

A second set of datasets was added. These correspond to the experimental results in the final version of the published paper:Daniel S. Penagos Molina, Wilhelm Eschen, Chang Liu, Jens Limpert, and Jan Rothhardt, "Multiplexing information limits in multi-beam ptychography," Opt. Express 33, 12925-12938 (2025)

- Data were measured at the Institute of Applied Physics in Jena.

Please contact me (santiago.penagos@uni-jena.de) for additional support.
DOI: 10.15468/dl.9pveq3
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cosmos caudatus",
 "Country is United States of America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021701-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.