cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/gvwjwb4dtc
title: Data for: Effects of European emission reductions on air quality in the Netherlands and the associated health effects

description: Emissions of air pollutants and modelled concentrations for theNetherlands
DOI: 10.17632/kgn88f7k9z
title: Zhongnancun Section Sequential leaching Hohl et al., 2019

description: This is a dataset accompanying the GCA publication by Hohl et al., 2019 on Cd isotope and trace metal concentrations obtained in the early Cambrian Niutitang Formation, Zhongnancun section, Guizhou Province, South China. The data set includes trace element and Cd isotope compositions from sequential leachates of organic matter rich sediments as well as C and XRD analysed obtained on bulk rock powders.N All rock powders have been registered at the system for Earth sample registration and have been assigned a SIGN number. Table 1: Trace metal concentrations Table 2: XRD mineral compositions Table 3: org C isotope compositions Table 4: Cd isotope compositions
DOI: 10.17632/xn3y2yx9wj
title: RF-transpond: A 1D coupled cold plasma wave and plasma transport model for ponderomotive force driven density modification parallel to B_0

description: The RF-Transpond code couples a fluid plasma transport solver with a frequency domain cold plasma RF wave solver in a 1D domain parallel to a strong background magnetic field. A ponderomotive force term proportional to parallel gradients in the electric field strength is included in the transport model in order to describe ponderomotive effects in the scrape-off layer (SOL) of fusion plasmas. The transport and wave codes are verified independently and a coupled case corresponding to experimental parameters from the LArge Plasma Device (LAPD) is presented. The density perturbation ratio R_n, calculated to describe ponderomotive force driven modifications, is up to 20% for the simulation inputs used.
DOI: 10.15468/dl.8kqbud
title: Occurrence Download

description: A dataset containing 37 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ichthyophis mindanaoensis Taylor, 1960"
 ]
}

 The dataset includes 37 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009376-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/s7cghps827
title: Learning from the COVID-19 Pandemic: Healthcare Disturbances and Telemedicine as an Alternative Rheumatology Practice in Indonesia

description: COVID-19 (Corona Virus Disease 2019) affects healthcare services. Besides, World Health Organization suggests telemedicine as an alternative in medical practice. During the pandemic, internal and external factors affect health care disruption and treatment interruption. Thus, telemedicine services may become an alternative in rheumatology practice during the COVID-19 pandemic and in the future.
DOI: 10.17632/fd728s4ntc
title: Program for calculating SU(4) Clebsch–Gordan coefficients

description: Abstract The SU(4) Clebsch-Gordan coefficients of the decomposition {N_a } ⊗ {N_b } → {N} are calculated for arbitrary irreducible representations {N_a }, {N_b } and {N}. They are efficiently computed for the group chain SU(4) ⊃ SU(3)×U(1) ⊃ SU(2)×U(1) ⊃ U(1) using the eigenfunction method along with recurrence relations. Title of program: CGSU4 Catalogue Id: AEBL_v1_0 Nature of problem The SU(4) Clebsch-Gordan coefficients according to the group chain SU(4) ⊃ SU(3) x U(1) ⊃ SU(2) x U(1) ⊃ U(1) are calculated for arbitrary couplings. Versions of this program held in the CPC repository in Mendeley Data AEBL_v1_0; CGSU4; 10.1016/j.cpc.2008.06.009 This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2019)
DOI: 10.21233/nk0r-8x86
title: Gamov Peninsula, Posyet Bay ostracode surface sample dataset

description: Raw data for the Gamov Peninsula, Posyet Bay ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.12456620.v1
title: JARVIS-DFT Finite Difference Elastic Constants (JVASP-18771 to JVASP-20260)

description: Contains input/output files for finite difference method based elastic calculations in the JARVIS-DFT.
DOI: 10.6084/m9.figshare.27088201.v1
title: Anti Spoofing Real Dataset.docx

description: The Anti-Spoofing Real Dataset, a valuable resource in the realm of security and fraud prevention. This dataset features a substantial collection of 44,832 videos and selfies, gathered from 37,980 individuals representing 170 countries. It’s meticulously curated to address critical challenges in anti-spoofing, making it an essential asset for businesses and safety systems.
DOI: 10.6084/m9.figshare.1436063.v12
title: Distance time plots for computational simulations of VALIIC/ McWhirter solar atmospheric model.

description: Distance time plots for computational simulations of VALIIC McWhirter solar atmospheric model. Membrane acoustic driver. Data for 00, 01, 02, 03 modes for 300s and 180s drivers. The plots show the distance time plots for different vertical and horizontal sections through the computational models. Plots for 180s and 300s drivers are generated by the following https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_180s.m https://github.com/mikeg64/smaug_pmode/blob/master/matlab/plot_timedist_array_300s.m
DOI: 10.6084/m9.figshare.28602518.v1
title: <i>Aspergillus halopiscium </i><i>sp. nov., </i>a halophilic fungus isolated from dried marine anchovies in Vietnam

description: In a study on the diversity of halotolerant fungi associated with salted fish products (dried marine fish and fish sauce production facilities) in Vietnam, three strains of <i>Aspergillus</i> subgenus <i>Polypaecilum</i> were obtained by placing the samples on diluted fish sauce agar (7% NaCl, 10% amino acids, 2% agar). The strains were halophilic. On MEA, they formed compact and raised colonies, suggesting stressed conditions. Growth was enhanced with the addition of NaCl at concentrations of 5 %–10 %. Growth was poor at 15 % NaCl, and no growth was observed at 20 % NaCl. Fungal growth on both MEA and fish sauce agar produced a strong ammonia odor, indicating a high level of deamination activity. DNA sequences of the ITS-LSU rRNA, and <i>rpb2</i>, <i>tub2,</i> and <i>cmdA</i> coding gens suggest the fungus is closest to <i>Aspergillus pisce </i>but represent a distinct species. A novel taxon <i>As</i><i>pergillus halopiscium </i>is proposed. The attached dataset includes a ITS sequence alignment of species in the subgenus <i>Polypaecilum</i> and the maximum likelihood tree.
DOI: 10.6084/m9.figshare.19786552.v1
title: Supplementary Material for: The Effect of Delivery Systems on the Induction of T Helper 1 Cell Response to an ESAT6-Like Protein Rv3619c and Identification of its Immunodominant Peptides

description: Rv3619c is an immunodominant Mycobacterium tuberculosis-specific antigen and belongs to the ESAT6-family of proteins. Delivery systems are needed to deliver such strong antigen in animal model and induce protective immune responses. Hypothesis. This study determined the effect of chemical adjuvants (IFA and Alum), mycobacteria, and a DNA plasmid as delivery systems on the induction of protective Th1 (IFN-ɣ), and pathologic Th2 (IL-5) and Treg (IL-10) cytokine responses to Rv3619c and its peptides. The Rv3619c gene was amplified from the genomic DNA of M. tuberculosis and cloned into appropriate vectors for expression in Escherichia coli, Mycobacterium smegmatis, and eukaryotic cells. Spleen cells from the mice immunized with Rv3619c using different delivery systems were stimulated in vitro with synthetic peptides (P1 to P6) of Rv3619c, and secretions of cytokines were estimated by ELISA. The results showed that the recombinant M. smegmatis and DNA plasmid induced the secretion of protective cytokine IFN-ɣ in response to peptide-pool of Rv3619c and all the individual peptides, whereas Rv3619c/IFA induced the secretion of IFN-ɣ in response to the peptide pool, and the peptides P5 and P6. However, the secretions of pathologic cytokines IL-5 and IL-10 were induced to none of the peptides with the delivery systems used. These results show that Rv3619c is a major antigen of M. tuberculosis with multiple immunogenic epitopes but the immune responses to individual epitopes can vary based on delivery systems used.
DOI: 10.6084/m9.figshare.19646736.v1
title: Supplementary Material for: Literature Review of the Efficacy of High-Volume Hemofiltration in Critically Ill Pediatric Patients

description: <b><i>Background:</i></b> Pediatric sepsis is a significant public health issue. This condition is exacerbated by rising serum creatinine and inflammatory cytokines that lead to deleterious effects upon the body. The current standard of care involves the use of continuous kidney replacement therapy to remove harmful cytokines until the body returns to homeostasis. In order to promote faster clearance and reduced stay in the ICU, high-volume hemofiltration (HVHF) has shown promise. However, there is a paucity of studies to fully elucidate its benefits. <b><i>Methods:</i></b> A literature search was done using PubMed/ MEDLINE and Embase. The literature was reviewed by two independent reviewers, who independently assessed the quality of randomized controlled trials by using the Cochrane risk of bias tool for RCTs and Newcastle-Ottawa Scale (NOS) for assessing the quality of nonrandomized controlled trials. Data were combined from studies with a similar design. <b><i>Results:</i></b> The primary endpoint of all-cause mortality was found to be reduced by 40% across all of the pooled studies. For secondary endpoints, significant reductions of serum creatinine were found. Additionally, duration of ICU stays and treatment course was found to be significantly shorter in HVHF patients than the current standard of care. The rate of adverse effects was analyzed, and there was no difference in the proportion of patients developing hypokalemia, hyperkalemia, hypernatremia, or hyponatremia. The proportion of patients developing hyperglycemia was higher in patients undergoing HVHF, whereas the proportions of patients developing bleeding were significantly less in patients undergoing HVHF. One study reported a total number of adverse events between the two groups which were significantly lesser in patients undergoing HVHF. <b><i>Conclusion:</i></b> HVHF shows promise as a modality to treat pediatric patients with sepsis. In order to confirm the benefits of this modality, future studies need significantly more patients for analysis.
DOI: 10.6084/m9.figshare.5901454.v1
title: carbon fluxes.xlsx

description: Chamber carbon fluxes<br>
DOI: 10.17632/534sw9r7t8
title: Journal of Islamic Education; No. 42

description: The journal is set to publish original articles on a wide range of issues including;

 Philosophy of Islamic education;
 Schools and approaches to Islamic education;
 Educational jurisprudence (Fiqh);
 Foundations, principles and methodology of Islamic education;
 History of Islamic education;
 Educational thoughts, views and ideas of Muslim scholars;
 Educational sciences such as educational management, curriculum planning and educational psychology with an Islamic approach;
 Comparative studies;
 The areas and dimensions of education in Islam include religious education, devotional education, moral education, sexual education, political education, and so on;
 Methodology of research in Islamic education;
 Examining different aspects of formal education with Islamic perspective;
DOI: 10.6084/m9.figshare.11897169.v1
title: Supplementary Material for: Accelerated Venovenous Hemofiltration as a Transitional Renal Replacement Therapy in the Intensive Care Unit

description: <b><i>Background:</i></b> Continuous renal replacement therapy (CRRT) is commonly employed in the intensive care unit (ICU), though there are no guidelines around the transition between CRRT and intermittent hemodialysis (iHD). Accelerated venovenous hemofiltration (AVVH) is a modality utilizing higher hemofiltration rates (4–5 L/h) with shorter session durations (8–10 h) to “accelerate” the clearance and volume removal that normally is spread out over a 24-h period in CRRT. We examined AVVH as a transition therapy between CRRT and iHD, with the aim of decreasing time on CRRT and providing a more graduated transition for hemodynamically unstable patients requiring RRT. <b><i>Methods:</i></b> Retrospective cohort study describing the clinical outcomes and quality initiative experience of the integration of AVVH into the CRRT program at an academic tertiary care center. Outcomes of interest included mortality, ICU length of stay and readmission rates, and technical characteristics of treatments. <b><i>Results:</i></b> In total, 97 patients received a total of 298 AVVH treatments (3.1 ± 3.3 treatments per patient). Totally, 271/298 (91%) treatments were completed successfully. During an average treatment time of 9.5 ± 1.6 h with 4.2 ± 0.5 L/h ­replacement fluid rate, urea reduction ratio was 23 ± 26% per 10-h treatment, and net ultrafiltration volume was 2.4 ± 1.3 L/treatment. Inpatient mortality was 32%, mean total hospital length of stay was 54 ± 47 days. Sixty-four out of 97 (66%) patients recovered renal function by discharge. Among those who transferred out of the ICU, 7/62 (11%) patients required readmission to the ICU after developing hypotension on iHD. <b><i>Conclusion:</i></b> AVVH can serve as a transition therapy between CRRT and iHD in the ICU and has the potential to decrease total time on CRRT, improve patient mobility, and sustain low ICU readmission rates. Future study is needed to analyze the implications on resource use and cost of this modality.
DOI: 10.6084/m9.figshare.7599923.v1
title: Raw data for Antirival ARGONAUTE protein during TCV infection revealed by Image-based trait analysis in Arabidopsis

description: Raw RGB images of Col-0, dcl2 dcl3 dcl4 and ten single ago mutants under TCV infection. <br><br>Output images and analysis results of the images mentioned above via the image-based disease trait phenotyping pipeline.<br>
DOI: 10.6084/m9.figshare.5124814.v1
title: Supplementary Material for: Rechallenge with mTOR Inhibitors in Metastatic Renal Cell Carcinoma Patients Who Progressed on Previous mTOR Inhibitor Therapy

description: <b><i>Objective:</i></b> To determine if mammalian target of rapamycin (mTOR) inhibitor (everolimus or temsirolimus) rechallenge in the third- or fourth-line setting after sequential use of a vascular endothelial growth factor receptor (VEGF)-targeted agent and an mTOR inhibitor is a feasible and effective treatment strategy in patients with metastatic renal cell carcinoma (mRCC). <b><i>Methods:</i></b> Patients who received a VEGF-targeted agent, an mTOR inhibitor and rechallenge with a second mTOR inhibitor at 2 institutions (Hôpital Européen Georges-Pompidou and Vienna Medical School) between 30 March 2001 and 15 September 2011 were included. Analyses of radiographic images were performed according to the Response Evaluation Criteria in Solid Tumors, version 1.0, to determine the objective response rate and treatment duration (TD). <b><i>Results:</i></b> Twelve patients met the inclusion criteria. Following 1 or 2 VEGF receptor-tyrosine kinase inhibitors, 7 patients firstly received everolimus and 5 patients received temsirolimus. Irrespective of treatment sequence, 6 of 12 patients (50%) responded to everolimus and 4 of 12 patients (33%) responded to temsirolimus; 3 patients (25%) did not respond to either. Median TDs (95% confidence interval) for everolimus → temsirolimus and temsirolimus → everolimus sequences were 10.3 months (8.8-19.2 months) and 5.8 months (2.9-19.3 months), respectively. <b><i>Conclusions:</i></b> Despite the limited number of patients, this highlights the feasibility of utilizing mTOR rechallenge as an integral part of sequential treatment strategies in mRCC.
DOI: 10.6084/m9.figshare.12661619.v1
title: nygaard20_dataset_json.zip

description: Data for the paper "Real-world Embodied AI Through a Morphologically Adaptive Quadruped Robot"
DOI: 10.15482/usda.adc/28291097.v1
title: Soil Health and Nutrient Flows with Enhanced Cover Cropping and Soil Management: Corn and Soybean Yields During 3 Years of Cover Crop and Nitrogen Management

description: Data for yields of two corn-soy rotation fields with different soil textures being managed with cover crop treatments over three years at the Central Maryland Research and Education Center (CMREC) in Beltsville, MD.Combine yield monitor data and hand harvest data are included. This data was collected to assess the impact of cover crops and their management as well as N fertilization rate on yields of the corn and soybean main crops.<br>
DOI: 10.6084/m9.figshare.11864538.v1
title: Evaluation of accuracies of genomic predictions for carcass traits in Jeju Black cattle

description: The study aimed to evaluation of accuracies of genomic predictions for carcass traits in Jeju Black cattle.For carcass traits, data comprised of genotypes and phenotypes of total 7988 Hanwoo (Hanwoo_phenotype.txt) which were considered as reference population. Similarly, the testing population consists of 1421, 19 and 656 genotyped animal from Jeju Black cattle, Jeju Black bull and Jeju Hanwoo breed from Jeju Island (Hanwoo_JJBC.map and Hanwoo_JJBC.ped).
DOI: 10.6084/m9.figshare.21901380.v1
title: bus driver driving style

description: data attached to article Predictive validity of the Multidimensional Driving Style Inventory in bus drivers’ accident involvement: a follow-up study
DOI: 10.6084/m9.figshare.22339636.v1
title: Supplementary Material for: Relationship between peripheral blood inflammatory factors and prognosis of subarachnoid hemorrhage: A meta-analysis

description: Background: Subarachnoid hemorrhage (SAH) is a severe cerebrovascular event with high mortality and disability rate. Neuroinflammation is involved in the brain injury after SAH, but the exact association between SAH progression and peripheral blood inflammatory factors is unknown. Therefore, to determine the relationship between inflammatory factors and the prognosis of SAH, we performed a meta-analysis. Method: A systematic literature review was conducted in PubMed, EMBASE, and Cochrane Library. Studies comparing the relationship between inflammatory factors (C-reactive protein (CRP), interleukin-6 (IL-6), interleukin-10 (IL-10), and tumor necrosis factor (TNF-α) and prognosis of SAH were included in the study. A random-effects meta-analysis was conducted based on mRS, GOS, and the occurrence of CVS, DCI, and DINDs. Sensitivity analysis was performed using the leave-one-out method. The New-castle–Ottawa Scale (NOS) for case-control studies was used to assess the quality of included studies. And for continuous variables, we calculated the mean difference (MD) with a 95% confidence interval (CI). Results: 1469 patients from 18 case-control studies met the inclusion criteria. The results found that patients in the good outcome group had significantly lower CRP levels than those in the poor outcome group (SMD: -1.15, 95% CI: -1.64– -0.66, p &lt; 0.00001, I2 = 87%), and peripheral IL-6 levels were significantly lower in SAH patients with the good functional outcome than those with the poor functional outcome (SMD: -0.99, 95% CI: -1.48– -0.51, p &lt; 0.0001, I2 = 88%). As for IL-10 (SMD: -0.28, 95% CI: -0.97– 0.42, p =0.43, I2 = 88%) and TNF-α (SMD: -0.40, 95% CI: -0.98– 0.19, p =0.18, I2 = 79%), due to the small number of studies, heterogeneity, and uncontrollable factors, robust conclusions cannot be drawn. Conclusion: SAH patients with good prognoses have significantly lower peripheral CRP and IL-6 levels. In addition, due to the small number of studies, heterogeneity, and uncontrollable factors, robust conclusions cannot be drawn for IL-10 and TNF-α. More high-quality studies are needed in the future to provide more specific recommendations for the clinical practice of inflammatory factors.
DOI: 10.6084/m9.figshare.25184537.v1
title: Transcriptome annotation

description: Assembled transcripts and predicted peptides of <i>L. chagosensis</i><i> </i>were searched against the GenBank non-redundant sequence, UniProtKB/Swiss-Prot, and human proteome v.11.5 from STRING v.11 databases with an e-value cut-off of 1x10<sup>-5</sup>. Protein domains were identified by mapping the peptide sequences against Pfam 32.0 database using HMMER v3.3. The top Blastx and Blastp hits in UniProtKB/Swiss-Prot database and Pfam annotations for each transcript were then used as input into Trinotate v3.2.2 (Haas 2015) to generate a comprehensive annotation report. <br>
DOI: 10.6084/m9.figshare.13182566.v1
title: Dataset figshare.xlsx

description: Raw dataset.
DOI: 10.6084/m9.figshare.20464203.v3
title: Rawdata

description: DNA methylation is essential for the survival of bacteriophages (phages), yet, we know little about the methylation of their genomes. Here, we analyze the methylomes of 9,665 metagenome-assembled high-quality human gut phages using single-molecule real-time sequencing. We show that gut phages universally use DNA methylations to escape from host defense systems, and reveal factors that correlate with methylation densities, including coding potential, gene function, and phage lifestyle. Strikingly, more than a third of the phages encode their own DNA methyltransferases (MTases). These phages have increased genome methylation densities, and are more abundant and prevalent than those without MTases. Most MTases are closely homologous to gut bacterial ones, and have been likely exchanged during phage-bacterial host interactions. As gut phages can share ~15% of their genes with gut bacteria at 90% protein similarity, a fast evolving, complex phage-bacterium interaction network can be assumed that shapes both phage and host fitness.