cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/tf585hwkj3
title: The fission yeast SUMO-targeted Ubiquitin Ligase Slx8 functionally associates with clustered centromeres and the silent mating type region at the nuclear periphery

description: Source data files of the article "The fission yeast SUMO-targeted Ubiquitin Ligase Slx8 functionally associates with clustered centromeres and the silent mating type region at the nuclear periphery"

Shrena Chakraborty1,2 , Joanna Strachan3, Kamila Schirmeisen1,2, Laetitia Besse5, Eve Mercier1,2 Karine Fréon1,2, Haidao Zhang3, Ning Zhao3, Elizabeth H Bayne3* Sarah AE Lambert1,2,7,*



1. Institut Curie, Université PSL, CNRS UMR3348, 91400 Orsay, France.
2. Université Paris-Saclay, CNRS UMR3348, 91400 Orsay, France.
3. Institute of Cell Biology, School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3FF, UK
5. Institut Curie, Université PSL, CNRS UAR2016, Inserm US43, Université Paris-Saclay, Multimodal Imaging Center, 91400 Orsay, France.
7. Equipe Labélisée Ligue Nationale Contre le cancer, France

* Corresponding authors: sarah.lambert@curie.fr; Elizabeth.bayne@ed.ac.uk
DOI: 10.17632/vtsjggkg9y
title: Dataset for Physicochemical properties, microstructure, and microbial community of optimal mahewu prepared using white and yellow maize with different inocula

description: Raw data for the parameters and responses presented in the manuscript titled 'Physicochemical properties, microstructure, and microbial community of optimal mahewu prepared using white and yellow maize with different inocula'
DOI: 10.17632/5xps5xg8hj
title: supplementary material

description: Through Infinium MethylationEPIC BeadChip analysis and quality control, a total of 76,514 DML were identified by comparing DNA samples from 7 RA patients and 9 OA patients. Among these, 51,859 DML showed hypermethylation and 24,655 DML showed hypomethylation, corresponding to 29,277 hypermethylated genes and 16,484 hypomethylated genes, respectively.
DOI: 10.17632/62tcwkct6n
title: Mean grain-size and sorting of sediments from the Piedra Buena contourite terrace

description: The dataset contains results of grain-size analyses of sediments after removing the biogenic calcium carbonate, the biogenic opal and organics.
Grain-size analyses were performed using a SALD-2300 laser diffraction particle size analyzer (Shimadzu, Japan), which yields a size spectrum from 17 nm to 2.5 mm. Grain-size analysis was performed both on the bulk sediment samples and calcium carbonate-free samples. Hydrochloric acid (10%) was used to remove biogenic calcium carbonate. For core AI-3442, where the radiolarian content is relatively high compared to the rest of the cores, the biogenic opal was removed using 1M sodium hydroxide solution (NaOH). H2O2 was used to remove organics. Sodium hexametaphosphate solution (Na6P6O18, 0.7%) and ultrasonication (1 min) were applied to all the studied samples for particle disaggregation. Mean grain size and sorting coefficient were calculated according to Folk and Ward (1957) using the GRADISTAT software (Blott and Pye, 2001).
DOI: 10.17632/8x6hvh8jbp
title: Exploring a Dichotomy Prime Numbers Divided by a Unique Property

description: In this research, we examine a special property of some prime numbers
that goes beyond separating primes from odd composites. Rather, this
property serves to divide the set of primes into two groups: those having
it and those lacking it. Incredibly, these two groups portray an almost
equal distribution of primes amongst them. This phenomenon is explored
in order to reveal some aspects concerning the basic characteristics and
structure of prime numbers. We also provide further insight on what this
trait implies within prime number theory through rigorous analysis as
well as mathematical inspection which shines a new light on the enigmatic
properties of these fundamental mathematical entities.
DOI: 10.17632/9ngtns3nxz
title: LINF_360013000

description: RNA-binding protein Torus | ZC3H31
Leishmania infantum (strain JPCM5)
DOI: 10.17632/3237vv39zj
title: LINF_140018000

description: enolase | ENOL Leishmania infantum (strain JPCM5)
DOI: 10.17632/hcx66pjkmd
title: Rajesh Research data

description: First author are the data procurer from his Ph.D. research.
DOI: 10.17632/rngtxkx9y4
title: Effects of predation risk on egg steroid profiles across multiple populations of threespine stickleback

description: Predation often has consistent effects on prey behavior and morphology, but whether the physiological mechanisms underlying these effects show similarly consistent patterns across different populations remains an open question. In vertebrates, predation risk activates the hypothalamic-pituitary-adrenal (HPA) axis, and there is growing evidence that activation of the maternal HPA axis can have intergenerational consequences via, for example, maternally-derived steroids in eggs. Here, we investigated how predation risk affects a suite of maternally-derived steroids in threespine stickleback eggs across nine Alaskan lakes that vary in whether predatory trout are absent, native, or have been stocked within the last 25 years. Using liquid chromatography coupled with mass spectroscopy (LC-MS/MS), we detected 20 steroids within unfertilized eggs. Factor analysis suggests that steroids covary within and across steroid classes (i.e. glucocorticoids, progestogens, sex steroids), emphasizing the modularity and interconnectedness of the endocrine response. Surprisingly, egg steroid profiles were not significantly associated with predator regime, although they were more variable when predators were absent compared to when predators were present, with either native or stocked trout. Despite being the most abundant steroid, cortisol was not consistently associated with predation regime. Thus, while predators can affect steroids in adults, including mothers, the link between maternal stress and embryonic development is more complex than a simple one-to-one relationship between the population-level predation risk experienced by mothers and the steroids mothers transfer to their eggs.
DOI: 10.17632/f27335mjgk
title: QUANTITATIVE INDICATORS OF LYSOZYME AND MORPHOPHYSIOLOGICAL PARAMETERS OF THE IMMUNE SYSTEM ORGANS IN PIKE Esox lucius AT DIFFERENT TEMPERATURE RANGES OF THE ANNUAL CYCLE

description: Supplement
DOI: 10.17632/kzcztj2pz5
title: Data for: Microstructural analysis (Voigt function method) of mullite in whiteware triaxial porcelains.

description: X-Ray powder diffraction profile data , for the studied samples
DOI: 10.17632/ndxwpywfym
title: LINF_060006300

description: cyclophilin 2 | CYP2; Leishmania infantum
DOI: 10.17632/mrpjrm5kn8
title: Dibbler raw microsatellite genotype

description: 20 Microsatellite loci of dibbler (Parantechinus apicalis) published in the paper 'Thavornkanlapachai, R.; Mills, H.R.; Ottewell, K.; Friend, J.A.; Kennington, W.J. Temporal variation in the genetic composition of an endangered marsupial reflects reintroduction history, Diversity, Under Review.' The aim of the paper to assess reintroduction outcomes at the Peniup Nature Reserve sourcing from multiple source populations in the Fitzgerald River National Park in Western Australia. The released animals were captive bred at Perth Zoo and were released over multiple years between 2001-2010. The founders of the captive populations were collected from the western (Twertup) and eastern (Hamersley Moir and Moir Track) side of Fitzgerald River National Park. The source and reintroduced populations were also undergone regular monitoring over multiple years. This data contains columns of year of collection, population names, lab ID which contains sex information and genotype scores. Missing genotype is labelled as zero.
DOI: 10.17632/pncywvb7kr
title: First-principles calculations of equilibrium cerium isotope fractionation in aqueous solution and during adsorption onto goethite

description: Raw data for figures in the manuscript are listed in these Tables.
DOI: 10.17632/cfvcz98zc8
title: Data of the FFHS mode

description: With the market demands on quality and efficiency of industrial services increase, the service schemes of the traditional field and factory service modes have gradually been unable to meet user requirements. Therefore, this paper proposes a field-factory hybrid service (FFHS) mode, in which service providers are allowed to transport service resources to the user-specified places for providing field services, and they also can establish temporary factories at certain user sites to provide factory services. On this basis, the FFHS process is analyzed and a bi-objective resource scheduling model considering the emergence of cloud platform is established for it. A two-segment code is designed and an enhanced multi-objective jellyfish search (EMOJS) algorithm is developed for solving the above model. In EMOJS, the elitist preservation strategy, a parameter adaptive adjustment strategy and an opposition-based learning strategy are developed to improve the search performance. Comparison experiments with several state-of-the-art algorithms on some typical bi-objective instances are carried out and prove that EMOJS possesses better search performance
DOI: 10.17632/drpjcx35sx
title: raw image data for "Resilient anatomy and local microplasticity of naïve and stress hematopoiesis "_24

description: Extended Data Figure 6.a Vertebrae B.ims Extended Data Figure 6.a Vertebrae MDP DC.ims
DOI: 10.17632/xskdzjxhvf
title: LINF_280025900

description: divalent cation transporter
Leishmania infantum (strain JPCM5)
DOI: 10.17632/57nggb65rk
title: ASEAN Subnational NDCs

description: Data for subnational climate regulations and policies in Indonesia and the Philippines.
DOI: 10.17632/k8p7r2mb97
title: LDHU3_07.0330

description: Homoserine dehydrogenase; Leishmania donovani (HU3 strain)
DOI: 10.17632/24rjsypp2n
title: Fifa 11+ Kids on knee torque and the performance

description: Data corresponds to the study titled "Effect of Fifa 11+ Kids on knee flexor and extensor torque and the performance on the agility T-test – A randomized, controlled, clinical trial". It was hypothesized that the FIFA 11 Kids training (FT) may promote an increase in muscle strength, facilitate greater balance in the knee agonist/antagonist ratio, and improve functional performance. Post-intervention knee extensor torque was significantly greater in the dominant (P&lt;0.001) and non-dominant (P&lt;0.001) limbs than baseline FT values. Post-intervention knee extensor torque values for the dominant (P=0.03) and non-dominant (P=0.02) limbs were significantly greater for the FT group than control group. Post-intervention knee flexor torque values were significantly greater in the dominant (P=0.003) and non-dominant (P=0.001) limbs than baseline FT values. Post-intervention knee flexor torque values for the non-dominant limb (P=0.007) were significantly greater for the FT group than control group. Post-intervention knee flexor time to peak torque was significantly lower in the dominant limb (P=0.05) than baseline FT values. FIFA 11+ Kids training increased the knee flexor and extensor torques and reduced the time to knee flexor torque. It did not improve the agonist/antagonist ratio or agility performance.
DOI: 10.17632/4m7kxt8hwv
title: 53Mn-53Cr chronometry of ureilites: Implications for the timing of parent body accretion, differentiation and secondary reduction

description: Data for "53Mn-53Cr chronometry of ureilites: Implications for the timing of parent body accretion, differentiation and secondary reduction"
DOI: 10.17632/f8k8gs7wyr
title: No increased risk of breast or gynecologic malignancies in women exposed to spironolactone for dermatological conditions: a retrospective cohort study

description: Supplemental Methods
DOI: 10.17632/25cnynmzx6
title: Divergent transcription of the Nkx2-5 locus generates two enhancer RNAs with opposing functions

description: We described two eRNAs transcribed from the enhancer of NK2 homeobox 5 (Nkx2-5) with antagonistic regulatory effects on the target gene’s transcription. These two eRNAs, which we have called Intergenic Regulatory Element Nkx2-5 Enhancers (IRENEs), are encoded on the same strand (SS) and in the divergent direction (div). Of note, IRENE-SS acts as a canonical promoter of Nkx2-5 transcription, whereas IRENE-div, represses the activity of the enhancer by recruiting the histone deacetylase (HDAC) sirtuin 1 (SIRT1). Experiments on human induced pluripotent stem cells (hiPSCs) revealed that the two human homologues are regulated during cardiac differentiation in vitro. Our findings demonstrate the existence of a new epigenetic mechanism involving an autoregulatory loop in which the transcription of a TF is controlled by the balance of eRNAs stemming from its own gene’s enhancer.
DOI: 10.17632/726pr7csxz
title: PARP1-mediated PARylation activity is essential for oligodendroglial differentiation and CNS myelination

description: Uncropped images used for western blot data presentation in the paper of Wang et al., entitled PARP1-mediated PARylation activity is essential for oligodendroglial differentiation and CNS myelination
DOI: 10.17632/9k2yhbd8wd
title: LINF_360062500

description: Protein kinase domain-containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/dr55n6h4yh
title: Translation and Cross cultural adaptation of ADL questionnaire for hemiplegic shoulder pain

description: Hemiplegic shoulder is a prevalent complication in stroke patients. It generally affects the overall quality of life and independence in daily activities. Activities of daily living (ADL) questionnaire is a screening tool that helps to examine the functional independence of patients with hemiplegic shoulder.​​ questionnaire is available in english language, but no Hindi version is yet available for population who only communicate and understand Hindi language. It is necessary that it should be precisely evaluated and understand Hindi language. The study aims to translate and evaluate translated domain of ADL questionnaire to see its cross-cultural adaptation, content validity and reliability for patients with hemiplegic shoulder after stroke. The study translates an ADL questionnaire for hemiplegic shoulder from English to Hindi by two translators, one with a medical background (T1) and one without (T2). After conducting a Delphi survey to validate its content, A study was conducted on 31 stroke survivors who had experienced (hemiplegic shoulder) to evaluate how dependable the Hindi version of the ALD questionnaire is. The Hindi version of the ADL questionnaire exhibited S-CVI/Ave and S-CVI/UA values of 0.97 and 0.80, respectively, with each item scoring an I-CVI exceeding 0.90. Furthermore, the ICC and internal consistency were assessed at 0.960 and 0.961, respectively. The ADL questionnaire in Hindi is a reliable and validated scale tailored for application in those experiencing hemiplegic shoulder following a stroke.
DOI: 10.17632/rdhxwbhmvn
title: Unified cancer and non-cancer transcriptomic data; cancer signatures identified by the TAVNIT software

description: This dataset contains unified cancer and non-cancer transcriptomic data. Here are data for the entire transcriptome and surfaceome (Supp 1). The data are applicable as input for the TAVNIT software. TAVNIT is a novel tool for cancer subtyping and subsequent extraction of druggable cancer signatures. Another part of the deposition is the output of TAVNIT executions – cell-surface cancer signatures. The cancer signature represents a record outlining transcription values of some number of genes that are largely sufficient to distinguish cancer samples from non-cancer samples in a given dataset. The deposited signatures are cell-surface ones. Their respective proteins can be potential targets for CAR-T cells. The signatures have been extracted for all cancer samples (Supp 2) and for prostate adenocarcinoma samples (Supp 3).
DOI: 10.17632/v5vbc6c38v
title: Data for: Lithological correction of chemical weathering proxies based on K, Rb, and Mg contents for isolation of orbital signals in clastic sedimentary archives

description: HK930 core, the Most Basin, the Ohre Rift, dated by cyclo- and magnetostratigraphy backupped by biostratigraphy, weathering proxies
DOI: 10.17632/4z3hcvd66g
title: LINF_360033700

description: membrane-bound acid phosphatase 2
Leishmania infantum (strain JPCM5)
DOI: 10.17632/78np9j2crw
title: Seguridad y Desarrollo humano: mirada desde Chile

description: Tema desarrollado en el contexto del curso de Seguridad y Desarrollo Internacional del magister en Estudios Transfronterizos de la Universidad Arturo Prat.
El material de esta clase se encuentra actualizado a mayo de 2023.
DOI: 10.17632/8hjmjsxkw9
title: Tillandsia landbeckii is securing high phenotypic plasticity and population fitness via clonal propagation at the dry limits of plant life in the Chilean Atacama Desert

description: Sarina Jabbusch, Marcus A. Koch*

*Correspondence: Marcus A. Koch, marcus.koch@cos.uni-heidelberg.de

General description of data

Tillandsia landbeckii is an epiarenically (on sand and without roots) growing Bromeliaceae from the Atacama Desert. We gathered genetic (genotyping-by-sequencing) as well as phenotypic data. The phenotypic data included growth rate, leaf length and stem diameter of one Tillandsia landbeckii population. Growth rate and leaf length were collected from nine study plots distributed across the population at different elevations and with different vegetation densities. This data was gathered for one year in situ in the Atacama Desert and for two years ex situ at Heidelberg Botanic Garden with T. landbeckii plants collected from the nine study plots. Leaf length and stem diameter were measured across the whole T. landbeckii population in addition to the phenotypic measurements in the nine plots.
With the genetic data, we determined the genetic diversity in the Tillandsia landbeckii population, assigned genetic variation into genepools and characterized clonally distributed individuals and their respective frequency.
In combination with the phenotypic data, we evaluated which effect genetic and phenotypic variability in concert have on the fitness of the T. landbeckii population.
Furthermore, the phenotypic field data are used to compare growth rates and leaf length under differing environmental conditions and to evaluate seasonal differences in the growth rate. 

The file explanation.docx will provide details about data files and scripts.
DOI: 10.17632/9f6dpjcntp
title: LDHU3_17.1970

description: Nicotinamide Mononucleotide Adenylyltransferase | NMNAT; Leishmania donovani (HU3 strain)
DOI: 10.17632/mgbmb9c8kb
title: LDHU3_12.1420

description: Flagellum attachment zone protein 2 | FAZ2; Leishmania donovani (HU3 strain)
DOI: 10.17632/n332vx4vhs
title: LINF_330013000

description: paraflagellar rod component | PFC16
Leishmania infantum (strain JPCM5)
DOI: 10.17632/rgs3ws4ptm
title: Cognitive Competence Acquisition Using Virtual Reality Simulator and Educational Video in Laparoscopic Cholecystectomy

description: 40 medical students were enrolled. They were randomized into two groups (video group and simulator group). In the video group, participants watched the step-by-step educational video twice. In the simulator group, participants underwent training using the virtual reality simulator. After the training, cognitive competence including decision making and error awareness was assessed using a questionnaire.
DOI: 10.17632/33xw3gvfm9
title: Data for Publication

description: Data for Publication in Data in Brief
DOI: 10.17632/87bw6ypzvx
title: Data for: A Dynamic Meshing Scheme for Integrated Hydrologic Modelling to Represent Evolving Landscapes

description: A. HydroGeoSphere (HGS) Simulation Process
This study involves two primary steps for solving the research problems. First, a data file is prepared for the pre-processor (known as "grok"), which is subsequently executed to generate input data files for PHGS. In the second step, PHGS is initiated to solve the problem and generates output data files.

B. Dataset Description
The repository encompasses two primary dataset categories:
1. Field Application Data: This dataset contains the information used in the main paper.
2. Dynamic Meshing Scheme Verification Data: All data used for figures in the main paper is stored in this repository. The file names correspond to the figure names in the main paper. The grok files (*.grok) included in the dataset are pre-processors essential for running the simulations. To execute the simulations and visualize their outcomes, three executables (GROK.EXE, PHGS.EXE, and HSPLOT.EXE) are required. For additional information, please contact the first author, Hyoun-Tae Hwang.

C. HGS Version Requirements for Simulations with Dynamic Meshing Schemes
To perform simulations involving dynamic meshing schemes, the following HGS version requirements must be met:
1. General Fixed Mesh Simulations: HGS version 2022 or higher is required.
2. Dynamic Meshing Problems: A special version of HGS for dynamic meshing is needed to simulate the dynamic meshing scenarios used in this study.

D. License Notice
Please be aware that permission is required for redistributing the data, and it should not be used for commercial purposes.
DOI: 10.17632/cvhb6s8vcm
title: NAK's Protocol for upper limb rehabilitation among patients with sub acute stroke

description: The study revolves around the subacute stroke patients to improve their upper limb functions in patients admitted to either hospital based settings or patients in OPDs for the upper limb functions two outcomes were assessed which were Fugl Meyer Assessment for Upper Extremity and Motricity Index which were assessed at the baseline, post 2 weeks of interventions and post completion of 4 week treatment protocol.
DOI: 10.17632/k8k4vb8v6z
title: LINF_290032400

description: 60S ribosomal protein L13; Leishmania infantum
DOI: 10.17632/v9jd7w6s6b
title: DIB-2022

description: Data to be publish in a Data in Brief article.
DOI: 10.17632/yyhzy94bym
title: Joireman et al. (JBR, Pandemic Fee Paper) - Data (Studies 1-3)

description: Note: This data is from Joireman, Karabas, & Munaganti's (JBR, conditionally accepted) paper titled: Customer Backlash against Pandemic Surcharges: The Mediating Role of Inferred Negative Motives and Implications for the “Surcharge Economy”. 

Abstract: The services sector was adversely affected by the pandemic. Supply chain disruptions, staff shortages, and low customer traffic led revenues to decline. To offset these challenges, some businesses introduced pandemic surcharges, which were not well received by customers. The current work aimed to understand customer backlash against pandemic surcharges and test potential strategies to reduce negative reactions to such surcharges. Across three experiments, results offer evidence for a key mediator whereby surcharges increase perceived negative firm motives, which leads to lower purchase, return, and tipping intentions. Making the surcharge optional and justifying it based on lost business were ineffective in reducing negative response to the surcharge. However, explaining that the surcharge was needed to cover additional cleaning costs or buy safety equipment reduced inferred negative motives and consequently increased purchase and tipping intentions. Implications for a broader “surcharge economy” are discussed.
DOI: 10.17632/58rz299z74
title: BioEmergences-wt6

description: BioEmergences-wt6: Zebrafish wild-type embryo during Gastrulation. Raw data 3D+time: nuclei + goosecoid (GSC) channels (VTK). Digital cell lineage (computed with BioEmergences workflow https://www.nature.com/articles/ncomms9674).