cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25982683.v1
title: Supplementary Material for: Reference equations for within-breath respiratory oscillometry in White adults

description: Background: within-breath analysis of oscillometry parameters is a growing research area since it increases sensitivity and specificity to respiratory pathologies and conditions. However, reference equations for these parameters in White adults are lacking and devices using multiple sinusoids or pseudorandom forcing stimuli have been underrepresented in previous studies deriving reference equations. The current study aims to establish reference ranges for oscillometry parameters, including also the within-breath ones in White adults using multi-sinusoidal oscillations.
Methods: White adults with normal spirometry, BMI≤30kg/m2, without a smoking history, respiratory symptoms, pulmonary or cardiac disease, neurological or neuromuscular disorders, and respiratory tract infections in the previous 4 weeks were eligible for the study. Study subjects underwent oscillometry (multifrequency waveform at 5-11-19Hz, Resmon PRO FULL, Restech Srl, Italy) in 5 centers in Europe and the USA according to international standards. The within-breath and total resistance (R) and reactance (X), the resonance frequency, the area under the X curve, the frequency dependence of R (R5-19), and within-breath changes of X (ΔX) were submitted to Lambda-Mu-Sigma models for deriving reference equations. For each output parameter, an AIC-based stepwise input variable selection procedure was applied. 
Results: 144 subjects (age 20.8 – 86.3 years; height 146 – 193 cm; BMI 17.42 – 29.98 kg/m2; 56% females) were included. We derived reference equations for 29 oscillatory parameters. Predicted values for inspiratory and expiratory parameters were similar, while differences were observed for their limits of normality.
Conclusions: We derived reference equations with narrow confidence intervals for within‐breath and whole‐breath oscillatory parameters for White adults.
DOI: 10.6084/m9.figshare.28667678.v1
title: ML-Surrogate Model

description: This repository contains attachments related to the publication:**[Design of a Metal 3D-Printed, Linearly Polarized Coaxial-to-Circular Waveguide Transition for High-Power Microwave Space Applications Using a Machine Learning Surrogate Model-Based Optimization Approach] ****Authors: ** [H…….., He….., Ra…………, Al………….]**Published in: ** [Virtual and Physical Prototyping], [Volume xxx], [Issue yyy], [Year 2025], [Page Numbers zzz or DOI https://doi.org/10.1080/xxxyyyzzzz]## DescriptionThis repository provides access to additional resources that enhance or support the findings presented in the main publication. These materials may include,* **Datasets: ** The raw or processed datasets used for the analysis in the publication.* **Python Code: ** Scripts or software implementations used for data analysis.***Surrogate Model: ** Models generated## Contents1-Folder Dataset & Models ----------------------This folder has the Dataset and Trained Models1-Individial Feature importance Score-----------This folder has the Feature importance Score of variables data2-Reduced LHS-----------------------------------This folder have the Reduced LHS feature importance Score## How to UseThe files in this repository are organized. You can browse the contents and download individual files as needed.To access the main publication, please refer to: the publication's DOI link https://doi.org/10.1080/xxxyyyzzzz].## LicenseThis work is licensed under a Creative Commons Attribution 4.0 International License. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/.## CitationIf you use the data or materials in this repository, please cite the original publication. And if you specifically use any of the attached files, you may also consider referencing the repository.## ContactFor any questions or inquiries regarding this repository or the publication, please contact:<br>………………Email Address: ………………..---**Last Updated:** March 25, 2025
DOI: 10.6084/m9.figshare.6943316.v4
title: The Seven Sins:Security Smells in Infrastructure as Code Scripts

description: This repository includes the dataset and source code used in the paper 'The Seven Sins: Security Smells in Infrastructure as Code Scripts', accepted at the International Conference on Software Engineering (ICSE) 2019. The tool is also available as a Docker image at: https://cloud.docker.com/repository/docker/akondrahman/ruby_for_sp/general <br><br>Practitioners use infrastructure as code (IaC) scripts to provision servers and development environments. While developing IaC scripts, practitioners may inadvertently introduce security smells. Security smells are recurring coding patterns that are indicative of security weakness and can potentially lead to security breaches. The goal of sharing the research artifact is to help software practitioners and researchers use our static analysis tool Security Linter for Infrastructure as Code (SLIC) to identify security smells in infrastructure as code scripts. We provide a Docker-based research artifact to use and replicate the major findings presented in the paper. Link of the paper: https://akondrahman.github.io/papers/icse19_slic.pdf<br>
DOI: 10.6084/m9.figshare.26548369.v1
title: Data for figures and tables.xlsx

description: Considering that bat ecology alterations may be linked with pathogen spillover, research on bat coronaviruses, particularly on the infection and transmission pattern among bats in relation with their ecology, is essential. We captured bats distributed in Korea from 2021 to 2022, examined coronaviruses in oral swabs, feces, urine, and ectoparasites, and were able to detect alphacoronavirus. We investigated coronaviruses, but noted no substantial differences in the body condition index in the coronavirus-positive bats. Binary logistic regression analysis revealed that bat ecological factors that were significantly associated with coronavirus-positive were roost type, sample type, and bat species. Coronavirus-positive ectoparasite cases suggested the potential role of them as the viral transmission vectors or fomites. Reinfection of a different coronavirus in the recaptured bat was evident, coronavirus circulation evading the potential protective immunity acquired from the previous coronavirus infection. The present findings provide comprehensive information on the coronaviruses transmission dynamics within bat populations linked with bat ecology.
DOI: 10.6084/m9.figshare.26336845.v1
title: <b>Genetic Origins and Migration Patterns of Xinjiang Mongolian Group Revealed through Y-Chromosome Analysis</b>

description: The Xinjiang Mongolians, located along the Silk Road, migrated westward from Q9 Northeast Asia in the 13th and 14th centuries. Despite its significance, genetic studies on Xinjiang Mongolians have been limited compared to other Mongolian populations. In this study, we analyzed the non-recombining region of the Y-chromosome in 165 Xinjiang Mongolian males using 108 biallelic markers and 44 STRs. Our study identified prevalent haplogroups C2a1a3-F1918 (10%), C2a1a2-M48 (8%), N1a1a-M178 (5%), and R1a1a-M17 (10%) in the Xinjiang Mongolians. Additionally, our study suggested a genetic affinity between Xinjiang Mongolians and Inner Mongolia Mongolian populations, as well as other ethnic groups from northwest China, based on the PCA analysis. The Network analysis revealed distinct branching expansion patterns in haplogroups C2a1a3a-F3796, C2a1a2- M48, and N1a1a-M178, with estimated timeframes aligning with Genghis Khan’s invasion of Xinjiang in the Yuan Dynasty. Notably, our analysis of the R1a1a-M17 Network highlighted the role of Xinjiang Mongolians in the expansion of Turkic-speaking populations in Xinjiang and surrounding regions. The integration of ancient DNA data suggested that the high frequency haplogroups C2a1a3a?F3796, C2a1a2-M48, and N1a1a-M178 could be traced back to their origin in Northeast Asia. Furthermore, the estimated TMRCA of haplogroup R1a1a-M17 implied cultural and genetic influences from Turkic populations during the Qagatay Khanate period. Overall, our study provided a genetic explanation for the ethnic origin of Xinjiang Mongolians, highlighting their migration from Northeast Asia and subsequent assimilation with the local populations in Xinjiang.
DOI: 10.6084/m9.figshare.28823195.v1
title: Policy Brief: Barriers to Doubling Farmers' Income in Southern India

description: India's Doubling Farmers' Income (DFI) mission fundamentally misunderstands the challenge of agricultural income enhancement by treating poverty as primarily a technical problem to be solved through market integration and technological adoption. Evidence from our comparative study of 106 farmers across Mysore and Wayanad districts reveals that this approach critically overlooks how social structures and institutional capacity determine policy effectiveness. The stark contrast between these districts demonstrates why DFI's current framework is failing its intended beneficiaries. In Mysore, where 68% of farmers report systematic exclusion from institutional support, DFI's push toward market-oriented agriculture has increased rather than reduced vulnerability. Without this fundamental reorientation, DFI risks deepening rather than resolving the agrarian crisis, particularly for India's most vulnerable farmers.
DOI: 10.14749/27626106
title: South African National HIV Prevalence, HIV Incidence, Behaviour and Communication Survey (SABSSM) 2017:  Adult _All provinces

description: <p> The adult data set contains information on HIV, behaviour, and health amongst persons aged 15 years and older who usually live at the visiting point or slept there the previous night as per the time of the interview. </p><p> This data set contains demographic information, living arrangement, orphanhood status, employment status, source of income, disability status, education level, knowledge and perceptions of HIV/AIDS and TB, sexual history, partner(s) characteristics, reproduction, male circumcision, HIV counselling and testing, HIV risk perception, alcohol use, use of other substances, health questions, mental health, household relations, migration and information from media and communication sources.</p><p> The data set contains 867 variables and 45 145 cases.</p>
DOI: 10.6084/m9.figshare.7393544.v1
title: The neck sensor signals

description: The neck sensor signals<br>
DOI: 10.6084/m9.figshare.26424892.v1
title: Supplementary Material for: Semaglutide ameliorates hepatocyte steatosis in a cell co-culture system by downregulating the IRE1α-XBP1-C/EBPα signaling pathway in macrophages

description: Non-alcoholic fatty liver disease (NAFLD) is currently the most common type of chronic liver disease. Semaglutide is a glucose-lowering drug administered for the treatment of type 2 diabetes mellitus (T2DM) and is clinically effective in the treatment of NAFLD. X-box binding protein 1 (XBP1) is related to the pathogenesis of both NAFLD and T2DM. The aim of the present study was to demonstrate whether the underlying mechanism of semaglutide treatment for NAFLD is via downregulation of the inositol-requiring transmembrane kinase/endonuclease-1α (IRE1α)-XBP1-CCAAT/enhancer binding protein α (C/EBPα) signaling pathway in macrophages. Methods: In the present study, NAFLD cell modeling was induced by oleic acid (0.4 mM) and palmitic acid (0.2 mM). Hepatocytes (AML12) and macrophages (RAW264.7) were co-cultured in 6-well Transwell plates. Semaglutide (60 or 140 nM) was administrated for 24 h, while pioglitazone (2 μM) and toyocamycin (200 nM) were used as a positive control drug and a XBP1 inhibitor, respectively. Autophagy and apoptosis of AML12 cells were detected by transmission electron microscopy and western blotting (WB). Hepatocyte steatosis was evaluated using total intracellular triglyceride determination, analysis of the relative expression of proteins and genes associated with lipid metabolism and hepatocyte Oil red O staining. Detection of inflammation factors was conducted by ELISA and WB. To explore the underlying mechanism of NAFLD treatment with semaglutide, the relative expression of related proteins and genes were tested. Results: Our study demonstrated that semaglutide treatment improved autophagy and inhibited apoptosis of hepatocytes, while notably ameliorating steatosis of hepatocytes. In addition, inflammation was attenuated in the NAFLD cell co-culture model after semaglutide administration. Semaglutide also significantly reduced the protein and gene expression levels of the IRE1α-XBP1-C/EBPα signaling pathway in macrophages. Conclusion: Semaglutide partially ameliorated NAFLD by down-regulating the IRE1α-XBP1-C/EBPα signaling pathway in macrophages. These findings may provide a potential theoretical basis for semaglutide therapy for NAFLD.
DOI: 10.6084/m9.figshare.11872512.v1
title: CuPCP-WAXS.zip

description: Pump-probe X-ray scattering data for [Cu4(PCP)3]+ measured at ID09 of ESRF <br>
DOI: 10.6084/m9.figshare.19441385.v2
title: Data, analysis code and simulation code for "Geometric control of topological dynamics in a singing saw"

description: This repository contains all experimental data and source code required to reproduce the figures in the paper<br><br>Shankar S, Bryde P, Mahadevan L. 2022 Geometric control of topological dynamics in a singing saw. Proceedings of the National Academy of Sciences USA.<br>also available as a preprint at<br><br>Shankar S, Bryde P, Mahadevan L. 2021 Geometric control of topological dynamics in a singing saw. arXiv preprint arXiv:2108.10875.<br>The dataset contains the following folders:<br><b>experiments</b>: Contains the experimental data (raw audio) and data analysis code to reproduce the experimental components of the figures: Fig. 1D, Fig. 3C-D, and Fig. S1A-C.The experimental data is contained in the J-bow, J-mallet, S-saw and S-mallet subfolders.<br><b>simulations</b>: Contains the code to run the numerical simulations and reproduce Fig. 2B-E, Fig. 3A-B, Fig. S2A-B, and Fig. S3A-D.The simulation code is written in Python and organized as follows:The shells folder contains finite element simulation code based partly on the FEniCS-Shells library<sup>1</sup> and employs the FEniCS Project finite element problem solving environment.<br>The saw folder contains scripts that perform the numerical simulations and produce the graphs. More information can be found in the README.<br>---<br><br><sup>1</sup>Simple and extensible plate and shell finite element models through automatic code generation tools, J. S. Hale, M. Brunetti, S. P. A. Bordas, C. Maurini. Computers & Structures, 209, 163-181, doi.org/10.1016/j.compstruc.2018.08.001.<br><br><sup>2</sup>M. Alnæs, J. Blechta, J. Hake, A. Johansson, B. Kehlet, Anders Logg, Chris Richardson, Johannes Ring, Marie E.Rognes, and Garth N. Wells. The FEniCS Project Version 1.5. Archive of Numerical Software, 3(100), December2015. ISSN 2197-8263. doi: 10.11588/ans.2015.100.20553. URL http://journals.ub.uni-heidelberg.de/index.php/ans/article/view/20553.<br>
DOI: 10.6084/m9.figshare.11982207.v1
title: Snow_Algae_shapefile.zip

description: Polygons outlining green snow algae blooms across the Antarctic Peninsula. Average and standard deviation of biomass within the polygon area given for each bloom in attribute table. Blooms identified and algal biomass estimated derived from Sentinel 2 imagery.
DOI: 10.6084/m9.figshare.28255595.v1
title: Protein structure and interactions elucidated with in-cell NMR for different cell cycle phases and in 3D human tissue models.

description: The source data: The protein in-cell NMR spectra representative of data presented in Figure 1-4 in standard CSV format.
DOI: 10.6084/m9.figshare.24942534.v1
title: Supplementary Material for: Evaluating sex differences in the characteristics and outcomes of lupus nephritis: a systematic review and meta-analysis

description: Introduction: More frequent and severe lupus nephritis (LN) has been reported in men compared to women but data are limited and inconsistent. We conducted a meta-analysis of the literature to compare the histopathologic findings and outcomes between men and women with biopsy-proven LN.
Methods: A systematic search of MEDLINE, Embase, Cochrane, and Web of Science databases was conducted through February 2021. Clinical information was extracted and synthesized from 25 studies that met inclusion criteria (1210 men and 6635 women). Pooled odds ratios (OR) with corresponding 95% confidence intervals (CI) were generated via meta-analysis, and meta-regression was performed to assess the impact of several covariates, both using random-effects models.
Results: Twenty studies reported kidney histopathology, eleven reported kidney outcomes and eight reported mortality rates. Men had greater odds of class IV ± V LN (OR 1.26, 95% CI 1.01-1.56), and the composite of end-stage kidney disease, persistent eGFR &lt;15 mL/min or doubling of serum creatinine (OR 2.20, 95% CI 1.59-3.06), and lower odds of complete remission (OR 0.52, 95% CI 0.39-0.68). Mortality was not statistically significantly different between sexes (OR 1.50, 95% CI 0.92-2.46). Meta-regression did not reveal statistically significant study-level relationships between sex differences in any of the covariates that could account for the greater odds of worse kidney outcome in males.
Conclusion: Our analysis confirms the association between male sex and increased severity of LN as well as worse kidney outcomes. Larger prospective studies are needed to validate this association and inform treatment strategies adapted to this population.
DOI: 10.6084/m9.figshare.26484559.v1
title: Processed spatial transcriptomics data

description: We employed spatial transcriptomics (ST) of five fresh-frozen OSCC samples, including 2 primary tumors with lymph node metastasis and 3 primary tumors without lymph node metastasis using the 10x Genomics Visium CytAssist platform.
DOI: 10.6084/m9.figshare.21103774.v2
title: Fresh and Aged Beef Electronic Nose Data

description: The characteristics of fresh beef from Brazil, Canada, and Horqin and aged beef stored for two years were collected using an electronic nose.
DOI: 10.6084/m9.figshare.12203258.v1
title: Seismic data.rar

description: The seismic data from temporary network is for the research "Locating the rock slope failures along highways and understanding their physical processes using seismic signals".
DOI: 10.6084/m9.figshare.25197047.v1
title: Table_5_2015_Set3_3-2

description: The grapevine is one of most widely perennial crops grown worldwide. As for other species displaying clusters of small fruits, the development of single berries within a bunch is asynchronous and heterogeneous. Because of this, the study of water and solute accumulation kinetics and balance at organ level cannot be directly extrapolated from samples of populations of fruits. In order to have an original and reliable dataset on the accumulation kinetics of the main solutes (primary and secondary metabolites and cations) and water, we analyzed fruits populations sorted according to their density and also individual berries from the onset of sugar importation to the end of phloem unloading. The studies were performed on a panel of varieties representing different metabolic contexts for the relationship between the import of organic and inorganic solutes and fruit growth, including genotypes able to import water at low fruit osmotic potential. These original data sets are suitable to revisit some aspects of the accumulation of main solutes and water in the grapevine fruit development and/or to perform comparative studies with other fleshy fruits.
DOI: 10.6084/m9.figshare.25234321.v1
title: Table S1-S4 for Liu et al., 2024

description: Table S1. Downcore variations of main parameters of the archive halves of U1512A cores, including AF demagnetization results, intensity of NRM demagnetized at 20 mT, MDF-median destructive field, MS-magnetic susceptibility, and NGR-natural gamma radiation.Table S2. The relative paleointensity (RPI) data of the U1512A cores.Table S3. Number of data points in 0.1-Myr bins of the U1512A and the Italian RPI records.Table S4. Selected absolute paleointensity (API) data from the PINT database shown in Fig. 9c<br><br>
DOI: 10.15468/dl.88yv7j
title: Occurrence Download

description: A dataset containing 220232 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ficus L."
 ]
}

 The dataset includes 220232 records from 1366 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009642-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/vrw-mly-dtc
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bwh-7n1-56v
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0ax-dhf-zlm
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z2v-sdh-amr
title: Sus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1wh-wt7-nw5
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tbz-4kn-p68
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wrm-6bb-5dj
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/epb-t8q-h7b
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/fp7-88q-rpt
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/8tf-kg0-07f
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/flj-34l-vk6
title: Lepidophyllum Cass.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ev5-akp-ak6
title: Hystrix Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/w6j-t4f-t3z
title: Bovidae Gray, 1821

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/b7p-qrj-v4q
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dtg-400-091
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/z6k-68p-apj
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bg8-219-nfa
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wq2-q44-jce
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.gr8whh
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Micrixalus herrei"
 ]
}

 The dataset includes 49 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018301-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/51v-h6k-etw
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/e8v-6zz-m51
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.