cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13279958
title: Additional file 5 of Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions

description: Details of the targets predicted for the 59 significantly expressed sRNAs. The table highlights target details and score for each category of targets for all sRNAs as well as upregulated/downregulated target mRNA details.
DOI: 10.6084/m9.figshare.13279955
title: Additional file 4 of Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions

description: Motifs, promoters and terminators predicted for the 59 significantly differentially expressed sRNAs.
DOI: 10.6084/m9.figshare.13279949
title: Additional file 2 of Genome-wide identification of Azospirillum brasilense Sp245 small RNAs responsive to nitrogen starvation and likely involvement in plant-microbe interactions

description: Worksheets showing details of the curated, 3860 candidate sRNAs differentially expressed between samples VC and VN, |the 468 candidate sRNAs that conform to the size requirement of 50-500 bp and the 59 candidate sRNAs from the 468 sRNAs that are significantly, differentially expressed between samples VC and VN.
DOI: 10.6084/m9.figshare.13279931
title: Additional file 1 of Evaluation of a community-based intervention for health and economic empowerment of marginalized women in India

description: Additional file 1: Supplementary Figure 1. The cover page and the table of contents’ page in the flipbook for beneficiaries. The table of contents displays the name of the 7 topics covered in the flipbook. The flipbook is in Hindi (local language). The instructions of how to use the book are shown behind the covers page. The image depicted above was developed by us. Supplementary Figure 2. The cover page and the table of contents’ page in the module. The table of contents displays the name of the 10 sessions in the module. The module is in Hindi (local language). The image depicted above was developed by us. Supplementary Figure 3. Progress tracking chart of the intervention activities across three intervals of the project (first 15 months, middle 12 months and last 8 months).
DOI: 10.6084/m9.figshare.13279586
title: Additional file 1 of The association between depressive symptoms and self-rated health among university students: a cross-sectional study in France and Japan

description: Additional file 1: Table S1. Description of the study population stratified by Sex. Abbreviations; PHQ-2, the 2-item Patient Health Questionnaire; BMI, body mass index. *i-Share cohort had BMI missing values: male 49(4.0), female 257 (5.8). Description of the two cohorts, stratified by Sex, concerning PHQ-2, Self-rated heatrh, Sex, Age, Year of study, Sleep, BMI, Physical activity, Smoking and Alcohol consumption, respectively. Table S2. Univariate comparison of all variables according to PHQ-2 score in the two cohorts stratified by Sex. Abbreviations; PHQ-2, the 2-item Patient Health Questionnaire; BMI, body mass index. *i-Share cohort had BMI missing values: 221 (5.1) for [0–2] and 84 (6.5) for [3–6]; p value was calculated without missing values. Table S3. Multivariate logistic regression analysis stratified by Sex. Abbreviation; BMI, body mass index. Association between PHQ-2 and Self-rated health, stratified by Sex, adjusted for Sex, Age, Year of study, Sleep, BMI, Physical activity, Smoking and Alcohol consumption. Figure S1-1. Correlation between self-rated health and depressive symptoms, PHQ-2 score and numbers and percentages of students with elevated depressive symptoms in each of the five categories of self-rated health: i-Share cohort, Spearman correlation coefficient 0.261, P value
DOI: 10.6084/m9.figshare.13279530
title: Additional file 3 of Transcriptomic profiling of adipose tissue inflammation, remodeling, and lipid metabolism in periparturient dairy cows (Bos taurus)

description: Additional file 3.
DOI: 10.6084/m9.figshare.13279526
title: Additional file 2 of Chd8 mutation in oligodendrocytes alters microstructure and functional connectivity in the mouse brain

description: Additional file 2: Table S2. This file contains raw data and detailed information for correlation analysis.
DOI: 10.6084/m9.figshare.13279524
title: Additional file 2 of Transcriptomic profiling of adipose tissue inflammation, remodeling, and lipid metabolism in periparturient dairy cows (Bos taurus)

description: Additional file 2.
DOI: 10.6084/m9.figshare.13279523
title: Additional file 1 of Chd8 mutation in oligodendrocytes alters microstructure and functional connectivity in the mouse brain

description: Additional file 1: Table S1. This file contains detailed information for clusters in DTI analysis.
DOI: 10.6084/m9.figshare.13279518
title: Additional file 4 of Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming

description: Additional file 4: Complete dataset of RNA-seq experiments including counts per million reads (CPM) levels for each sample at each time point and fold-change values between PCOS and control of all genes analyzed. Positive values denote greater expression in PCOS and negative values denote greater expression in controls.
DOI: 10.6084/m9.figshare.13279515
title: Additional file 3 of Dynamic changes in chromatin accessibility, altered adipogenic gene expression, and total versus de novo fatty acid synthesis in subcutaneous adipose stem cells of normal-weight polycystic ovary syndrome (PCOS) women during adipogenesis: evidence of cellular programming

description: Additional file 3: Additional tables with data from ATAC-seq. Supplemental Table 1. Details of each differentially accessible region at each time point for each patient sample. C and P denotes control and PCOS sample, respectively. Roman numerals denote duplicate samples of each female type. Arabic numerals denote time point. Supplemental Table 2. Results from HOMER transcription factor motif enrichment analysis of differentially accessible regions. Supplemental Table 3. Results from GREAT pathway analysis of differentially accessible regions in PCOS versus control at day 3. Supplemental Table 4. Statistics of ATAC-seq read trimming.
DOI: 10.6084/m9.figshare.13279502
title: Additional file 1 of Emotion regulation through bifocal processing of fear inducing and disgust inducing stimuli

description: Additional file 1: Table S1. Results from whole-brain analysis at an FWE-corrected p Neutral, Disgust &gt; Neutral, and from exploratory whole-brain analysis at p
DOI: 10.6084/m9.figshare.13279415
title: Additional file 4 of Remotely assessing tephra fall building damage and vulnerability: Kelud Volcano, Indonesia

description: Additional file 4.
DOI: 10.6084/m9.figshare.13279412
title: Additional file 3 of Remotely assessing tephra fall building damage and vulnerability: Kelud Volcano, Indonesia

description: Additional file 3.
DOI: 10.6084/m9.figshare.13279406
title: Additional file 2 of Remotely assessing tephra fall building damage and vulnerability: Kelud Volcano, Indonesia

description: Additional file 2.
DOI: 10.6084/m9.figshare.13279403
title: Additional file 1 of Remotely assessing tephra fall building damage and vulnerability: Kelud Volcano, Indonesia

description: Additional file 1.
DOI: 10.6084/m9.figshare.13279397
title: Additional file 9 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 9: Table S8. Primers used for RT-PCR of highly expressed genes in head and salivary gland.
DOI: 10.6084/m9.figshare.13279394
title: Additional file 8 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 8: Table S7. Annotation summary of potential effector proteins (based of Arabidopsis fed S. litura).
DOI: 10.6084/m9.figshare.13279391
title: Additional file 7 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 7: Table S6. List of proteins functionally annotated to Nr database but with no Pfam domain.
DOI: 10.6084/m9.figshare.13279388
title: Additional file 6 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 6: Table S5. Proteins with interesting functions annotated to Pfam and Nr database.
DOI: 10.6084/m9.figshare.13279385
title: Additional file 5 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 5: Table S4. The Pfam domains found in the head and salivary gland transcriptome.
DOI: 10.6084/m9.figshare.13279382
title: Additional file 4 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 4: Table S3. The list of KEGG pathways.
DOI: 10.17632/xkjbtgdyys.2
title: Thermal performance of brick and stone masonry: Cumulative heat flux dataset for main orientations and under diverse seasonal conditions

description: This dataset consists of the hourly heat flux for four seasons and orientations of 15 different construction configurations of brick and stone masonry combined with insulation system solutions. The analysis was conducted with the use of Finite Element Modelling (FEM). The development of the models and the investigation of their thermal performance was conducted with the use of thermal modelling and numerical simulation analysis with COMSOL Multiphysics. For this purpose, a transient 2D multi- dimensional, time- dependent simulation model on finite elements was developed. The governing equations of heat transfer were considered as well as the convection and radiation heat transfer coefficients in accordance to the ISO 6946:2017.
DOI: 10.6084/m9.figshare.13279379
title: Additional file 3 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 3: Table S2. Annotation summary of potential effector proteins (based of reference genome).
DOI: 10.6084/m9.figshare.13279376
title: Additional file 2 of In silico identification of effector proteins from generalist herbivore Spodoptera litura

description: Additional file 2: Table S1. Annotation summary of potential effector proteins.
DOI: 10.6084/m9.figshare.13279340
title: Additional file 1 of Assessing the routine-practice gap for home blood pressure monitoring among Chinese adults with hypertension

description: Additional file 1. Home BP monitor ownership and measurement of a structured questionnaire developed for this study and independent determinants of controlled office BP among treated hypertensive sample. The survey instrument used in the study to assess home BP monitor and routine-practice of HBPM among Chinese adults with hypertension. Table S1. Home BP monitor ownership and routine practice of HBPM survey. The questions and possible responses used in the assessment of home BP monitor ownership, HBPM weekly and optimal HBP monitoring behavior. Table S2. Health care providers’ HBPM practice survey. The data used to assess the value of health care providers on HBPM and the application of HBPM readings for treatment adjustment. Table S3. Physical examination. The data used in the assessment of overweight or obesity and control of office blood pressure. Table S4. Summary of independent determinants of office BP control. OR and 95% CI indicated the correlation between HBPM weekly or other factors and controlled office BP among treated hypertensive patients.
DOI: 10.17632/hgmsgwfjns.1
title: Clinical Impact of Immunotherapy in Merkel Cell Carcinoma patients: a Systematic Review and Meta-Analysis

description: Background: Merkel cell carcinoma (MCC) is an aggressive tumor with high mortality and increasing incidence rates, especially in the aging population. Current evidence regarding the immunotherapy’s effect on clinical response and safety is controversial. Objective: To summarize immunotherapy’s effect on the confirmed overall response, as well as its safety in patients with MCC. Methods: A generalized linear-mixed model analyzed objective responses, progression free survival, overall survival, and treatment-related adverse events (TRAE) for meta-analysis of proportions. We calculated the mean reduction and standard deviation for each individual tumor diameter. Objective responses comparing Merkel cell polyomavirus serology status were analyzed using odds ratio through a fixed-effects model. Results: Six clinical trials involving 201 patients treated with immunotherapy were included. Confirmed objective response rate was 51% (95%CI, 0.40-0.62; I2=37.1%). Although TRAE of any grade were observed in 84% (95%CI, 0.64-0.94; I2=79.4%), grade ≥ 3 was observed in 18% (95%CI, 0.11-0.29; I2=49.5%). Conclusions: The included agents offer good response rates with significant reduced tumor diameter. They were well tolerated, offering an alternative for patients who are refractory to conventional treatment. Agents studied here may be considered ahead of those recommended by the NCCN guidelines and drugs approved by the FDA.
DOI: 10.6084/m9.figshare.13279307
title: Additional file 17 of Definition of constitutive and stage-enriched promoters in the rodent malaria parasite, Plasmodium yoelii

description: Additional File 17: Alignments of the promoter sequences between P. yoelii and P. berghei or P. chabaudi. Alignments of these sequences were conducted using the blastn tool embedded in PlasmoDB.org.
DOI: 10.17632/h6p8dgd84c.2
title: Observation of Stress Corrosion Cracking of Stainless Steel Using Real-Time In-Situ High-Speed Atomic Force Microscopy and Correlative Techniques

description: Data used within paper titled "Observation of Stress Corrosion Cracking of Stainless Steel Using Real-Time In-Situ High-Speed Atomic Force Microscopy and Correlative Techniques" by Stacy Moore, Robert Burrows, David Kumar, Maximilian Kloucek, Alexander Warren, Peter Flewitt, Loren Picco, Oliver Payton, and Tomas Martin. Data includes: Raw data files and final figure .jpgs for Figures 1-6, and Supplementary Figures 1-8.
DOI: 10.17632/y3w52rk72y.1
title: Supplemental Material for: Hand Dermatitis in Adults Referred for Patch Testing: Analysis of North American Contact Dermatitis Group Data, 2000–2016.

description: Supplemental Tables 1 and 2 Supplemental Figure 1
DOI: 10.17632/zjhfk7mm7v.1
title: Verst-Maldaun Language Assessment (VMLA) Validation Process Database

description: This paper drives the process of creating VMLA, a language test meant to be used during awake craniotomies. It focuses on step by step process and aims to help other developers to build their own assessment. This project was designed as a prospective study and registered in the Ethic Committee of Educational and Research Institute of Sirio Libanês Hospital. Ethics committee approval number: HSL 2018-37 / CAEE 90603318.9.0000.5461. Images were bought by Shutterstock.com and generated the following receipts: SSTK-0CA8F-1358 and SSTK-0235F-6FC2 VMLA is a neuropsychological assessment of language function, comprising object naming (ON) and semantic. Originally composed by 420 slides, validation among Brazilian native speakers left 368 figures plus fifteen other elements, like numbers, sentences and count. Validation was focused on educational level (EL), gender and age. Volunteers were tested in fourteen different states of Brazil. Cultural differences resulted in improvements to final Answer Template. EL and age were identified as factors that influenced VLMA assessment results. Highly educated volunteers performed better for both ON and semantic. People over 50 and 35 years old had better performance for ON and semantic, respectively. Further validation in unevaluated regions of Brazil, including more balanced number of males and females and more even distribution of age and EL, could confirm our statistical analysis. After validation, ON-VMLA was framed in batteries of 100 slides each, mixing images of six different complexity categories. Semantic-VMLA kept all the original seventy verbal and non-verbal combinations. The validation process resulted in increased confidence during intraoperative test application. We are now able to score and evaluate patient´s language deficits. Currently, VLMA fits its purpose of dynamical application and accuracy during language areas mapping. It is the first test targeted to Brazilians, representing much of our culture and collective imagery. Our experience may be of value to clinicians and researchers working with awake craniotomy who seek to develop their own language test. The test is available for free use at www.vemotests.com (beginning in February, 2021)
DOI: 10.17632/r49yg49ddc.1
title: Genomic screens identify host factors for SARS-CoV-2 and common cold coronaviruses. Wang et al.

description: Supplemental Tables S1 to S5 in Microsoft Excel format for the article "Genomic screens identify host factors for SARS-CoV-2 and common cold coronaviruses" (Wang et al., 2020): Table S1: CRISPR screen results. MaGECK output for positive gene enrichment analysis of SARS-CoV-2, 229E and OC43 host factor screens. Related to Figure 1. Table S2: Gene ontology enrichment analysis of individual CRISPR screens and network propagation clusters. Related to Figure 2. Table S3: Network propagation results. Related to Figure 2. Table S4: RNP editing efficiencies in A549-ACE2 and Huh7.5.1-ACE2/TMPRSS2 cells. Related to Figures 3 and 5. Table S5: Oligonucleotide sequences used in this study. Related to STAR Methods.
DOI: 10.17632/jfm89d48cs.1
title: Development of Granuloma Annulare in Patients on Biologic Therapies: A Systematic Review - Supplementary Files and Tables

description: JAAD - Supplementary Files and Table for "Development of Granuloma Annulare in Patients on Biologic Therapies: A Systematic Review"
DOI: 10.17632/ggrrdsh3wj.1
title: Supplementary Materials for "Evaluating the Barriers to Isotretinoin Treatment for Acne Vulgaris in Pediatric Patients"

description: Supplementary materials for JAAD Research Letter titled "Evaluating the Barriers to Isotretinoin Treatment for Acne Vulgaris in Pediatric Patients."
DOI: 10.17632/g55vtzk473.1
title: Negative Transfer Dataset

description: This dataset is to explore whether there are any cases of negative transfer among the participants' answers. This dataset is for a follow-up study of Stratton (2020), which focused on the positive transfer. Particularly, the participants' answers to the post-test item 6 and the delayed post-test item 2 were explored. A different coding scheme is used for this dataset, as this focused on the negative transfer (publication is in progress).
DOI: 10.6084/m9.figshare.13279200
title: Additional file 4 of VALENCIA: a nearest centroid classification method for vaginal microbial communities based on composition

description: Additional file 4. Table S1
DOI: 10.5281/zenodo.4285722
title: Wikidata Dump test

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.5281/zenodo.4285721
title: Wikidata Dump test

description: RDF dump of wikidata produced with wdumps. <br> View on wdumper <b>entity count</b>: 0, <b>statement count</b>: 0, <b>triple count</b>: 0
DOI: 10.6084/m9.figshare.13279190
title: Additional file 1 of Potential factors that influence usage of complementary and alternative medicine worldwide: a systematic review

description: Additional file 1. Risk of bias.
DOI: 10.17632/79frfcjzhm.1
title: Supplemental Table S1. Oligonucleotides used for polymerase chain reaction detection of antimicrobial resistance genes, SCCmec type, sanitizers resistance genes, biofilm formation genes

description: Antimicrobial resistance of Staphylococcus spp. isolated from organic and conventional Minas Frescal cheese producers in the state of São Paulo – Brazil
DOI: 10.6084/m9.figshare.13279167
title: Additional file 7 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 7. Statistical analysis results from alpha and beta diversity analysis.
DOI: 10.6084/m9.figshare.13279166
title: Additional file 8 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 8: Table S8. The comparison with the existing ML-based HD study, and whether these 66 genes are included in the known HD studies.
DOI: 10.6084/m9.figshare.13279164
title: Additional file 6 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 6. R code.
DOI: 10.6084/m9.figshare.13279160
title: Additional file 7 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 7: Table S7. The enriched KEGG PATHWAY, Reactome, and PANTHER database of the identified genes.
DOI: 10.6084/m9.figshare.13279157
title: Additional file 6 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 6: Table S6. The enriched KEGG DISEASE, NHGRI GWAS Catalog, and OMIM of the identified genes.
DOI: 10.6084/m9.figshare.13279155
title: Additional file 4 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 4. Mothur Shared file used to calculate alpha and beta diversity metrics.
DOI: 10.6084/m9.figshare.13279154
title: Additional file 5 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 5: Table S5. The enriched Gene Ontology of the identified genes.
DOI: 10.6084/m9.figshare.13279152
title: Additional file 3 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 3. Mothur Taxonomy file containing taxa information of all the OTUs.
DOI: 10.6084/m9.figshare.13279151
title: Additional file 4 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 4: Table S4. The list of the identified genes of this study. A tick sign or blank denotes whether this gene was identified in the corresponding algorithm or not, respectively.
DOI: 10.6084/m9.figshare.13279149
title: Additional file 2 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 2. Mothur Standard Operating procedure for microbiota profiling.
DOI: 10.6084/m9.figshare.13279148
title: Additional file 3 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 3: Table S3. The coefficients of the generalized linear model.
DOI: 10.6084/m9.figshare.13279146
title: Additional file 1 of Distinct microbial assemblages associated with genetic selection for high- and low- muscle yield in rainbow trout

description: Additional file 1. Differentially abundant taxa. Table including taxa having significant differences in abundance between the two genetic lines.
DOI: 10.6084/m9.figshare.13279145
title: Additional file 2 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 2: Table S2. The identified 30 decision trees and 49 non-redundant genes of the random forest.
DOI: 10.6084/m9.figshare.13279142
title: Additional file 1 of Identification of contributing genes of Huntington’s disease by machine learning

description: Additional file 1: Table S1. The input file to RapidMiner program of this study. Columns are attributes, while rows are samples. The column “HD” is a binominal attribute, i.e., 1 or 0, describing whether the sample is diagnosed with HD or not, respectively.