cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25550/tnm
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm427

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:38292345-38293728 **Name:** mCF113 **Vista Enhancer ID:** mm427 **Nearest craniofacial gene or locus:** Msx1 **Enhancer expression:** positive **Tissues where active:** facial mesenchyme, nose **Comment on OPT files:** no clip file This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 3 movie (.avi) files: 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Coronal plane movie, Sagittal plane movie, Transverse plane movie * 3 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text file mCF113metadata.txt from the External Reference section .
DOI: 10.25550/tr8
title: ChIP-seq analysis of p300 bound regions in E14.5 mouse palates

description: This dataset includes the results of ChIP-Seq analysis of p300 bound regions in E14.5 mouse palates. The results are also presented as tracks on the Genome Browser (see links in the Additional Information section) . The data include the following information for each peak called: * ranking. Called peaks are ranked by maximum coverage, those with equal maximum coverage are then ranked by local p-value. * the location of the peak, shown as chromosome start and end positions (mouse genome build mm9) * peak length * position of the peak summit * tags: the number of reads in peaks (# reads in region, not maximum read coverage depth) * score: -(log(pvalue)) * fold enrichment: enrichment in peak vs input sample * FDR: false-discovery rate annotation based on post-peak calling filtering of peaks based on genome annotation To download the data, log in and click on the "Download dataset" button.
DOI: 10.25550/tw4
title: microCT - Soft Tissue of Myf5-Cre;Smad4flfl mouse at E17.5

description: This dataset includes 1 microCT scan of the skull of a Myf5-Cre; Smad4flfl mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tzm
title: microCT - Soft Tissue of K14-Cre; Tgfbr2flfl mice at E15.5

description: Mouse ID: JI302 This dataset includes microCT scans of the skulls of K14-Cre;Tgfbr2flfl mice at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v30
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm408

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6:51054237-51055194 **Name:** mCF94 **Vista Enhancer ID:** mm408 **Nearest craniofacial gene or locus:** none **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF94metadata.txt from the External Reference section
DOI: 10.25550/v4j
title: Gene expression profiling of the palate in mice with a conditional inactivation of Alk5 at embryonic day E13.5

description: We performed global gene expression analyses of the palate in Wnt1-Cre;Alk5^fl/fl and Alk5^fl/fl control mice at embryonic day E13.5. Total RNA samples (1 ug per sample) were converted into biotin-labeled cRNA using the Enzo BioArray Terminal Labeling Kit with Biotin-ddUTP and standard protocols recommended by Affymetrix (Santa Clara, CA). Fragmented cDNA was applied to GeneChip, Mouse Genome 430 2.0 Arrays (Affymetrix) that contain probe sets designed to detect over 39000 transcripts. Microarrays were hybridized, processed and scanned, as previously described using manufacturers recommended conditions.
DOI: 10.25550/v54
title: microCT - Soft Tissue of C57BL6J mouse at E14.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E14.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v8a
title: Gene expression microarray - mouse E10.5 lateral-nasal process

description: Gene expression microarray using tissue obtained by laser capture microdissection (LCM) from the lateral-nasal process of mouse embryos at E10.5. See links to Genome Browser in the Additional Information section.
DOI: 10.25550/vgw
title: microCT - Bone Tissue of K14Cre;Tgfbr2flfl at E16.5

description: This dataset includes 1 microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vpg
title: microCT - Bone Tissue of C57BL6J at E18.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vse
title: microCT - Soft Tissue of Ctgf Control Mouse at P0

description: Mouse ID: CP065 This dataset includes microCT scans of the skull of a Ctgf Control Mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vt0
title: microCT - Bone Tissue of Smad4 control mouse at E17.5

description: This dataset includes 1 microCT scan of the skull of a Smad4 control mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vvm
title: Skull vault formation in individual wildtype AB fish

description: An individual fish was imaged successively from 14-33 dpf by confocal microscopy, during the period of induction and growth of the frontal and parietal bones. The fish was transgenic for col1a1a:gfp, marking chondrocytes, and for sp7:mcherry, marking osteoblasts.
DOI: 10.25550/vvr
title: microCT - Soft Tissue of K14Cre;Tgfbr2flfl mouse at E16.5

description: Mouse ID: JI226 This dataset includes 1 microCT scan of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vy4
title: microMRI images of skulls of wild type mice at E15.5

description: microMRI images of skulls of unaffected wild type mice at E15.5. The dataset contains 3-D images in niftii format for each of 10 mice.
DOI: 10.17632/ftwx75jz9n.1
title: Data for: Cumulative effects of syntactic experience in a between- and a within-language context: Evidence for implicit learning

description: Error-based implicit learning models suggest that speakers adapt syntactic predictions in response to prior syntactic experience and such adaptation is sensitive to surface structures (word order) (e.g., Chang, Dell, & Bock, 2006). To determine the scope of syntactic processing to which an error-based implicit learning mechanism is applicable and its sensitivity to surface structures, we investigated error-based implicit learning across different constructions in a between-language context of Chinese and English (Experiment 1) and in a within-language context of Chinese (Experiment 2). Our results showed that Chinese speakers integrated cumulative experience in Chinese into syntactic predictions of not only Chinese but also English and that prediction adaptation was not sensitive to surface word order at least in a between-language context. These findings suggest that an error-based implicit learning mechanism is a universal, language-unspecific processing mechanism that is not sensitive to surface syntactic structures. We discuss these findings in terms of theories of structural priming and bilingual syntactic processing and consider the need for a model that accommodates our findings.
DOI: 10.17632/xc2rp7ry99.1
title: Data for: Sea breeze cooling power and its influencing factors in a coastal city
DOI: 10.25550/tk2
title: Transgenic Mouse Enhancer OPT Assays - mm60

description: ChIP-seq, RNA-seq and transgenic assays to identify non-coding regulatory elements (enhancers) active during craniofacial development. Follow this [link](http://enhancer.lbl.gov/cgi-bin/imagedb3.pl?form=presentation&show=1&experiment_id=60&organism_id=2) to see associated data in the VISTA browser.
DOI: 10.25550/tqe
title: microCT - Bone Tissue of Myf5-Cre;Smad4 at E16.5

description: Mouse ID: DH297 This dataset includes microCT scans of the skull of a Myf5-Cre;Smad4 mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tt6
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm426

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr5:38216912-38220459 **Name:** mCF112 **Vista Enhancer ID:** mm426 **Nearest craniofacial gene or locus:** Msx1 **Enhancer expression:** positive **Tissues where active:** branchial arch, ear, eye, facial mesenchyme, genital tubercle, hindbrain, limb, midbrain, nose, somite This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * 3 movie (.avi) files: 3-D modesl generated by Optical Projection Tomography (OPT). Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. Each of the movies represents a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. See links in External Referece section to download the following movie files: Coronal plane movie, Sagittal plane movie, Transverse plane movie * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ] * Tested element.txt: Download the text files mCF112metadata.txt and mCF112Lmetadata.txt from the External Reference section .
DOI: 10.25550/twp
title: microCT - Skull of C57BL6J mouse at E17.5

description: This dataset includes 1 microCT scan of the skull of a C57BL6J mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/tyw
title: microCT - Head soft tissue of Tgfbr2fl/fl mice at E18.5

description: This dataset contains microCT scans of head tissue of two Tgbr2fl/fl mice at stage E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v0t
title: microCT - Bone Tissue of Tgfbr2 Control mouse at E18.5

description: Mouse ID: JI271 This dataset includes microCT scans of the skull of a Tgfbr2 Control mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v0y
title: microCT - Soft Tissue of Tgfbr2flfl control mouse at E15.5

description: Mouse ID: JI238 This dataset includes 1 microCT scan of the skull of a Tgfbr2flfl mouse at E15.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v5t
title: microCT - Soft Tissue of an Msx1+/- mouse at E17.5

description: Mouse ID: AH240 This dataset includes microCT scans of the skull of an Msx1+/- mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v60
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm922

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr13: 48874997-48876671 **Name:** mCF175 **Vista Enhancer ID:** mm922 **Nearest craniofacial gene or locus:** Barx1 **Enhancer expression:** positive **Tissues where active:** branchial arch, hindbrain, midbrain **Comment on OPT files:** This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vdr
title: microCT - Soft Tissue of a Smad4fl/fl mouse at P0

description: Mouse ID: JF268 This dataset includes microCT scans of the skull of a Smad4fl/fl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vj0
title: Imputed Marker Data in chr8q24 Region

description: Imputed markers generated with BEAGLE in CL/P case-parent trios from an international consortium. Imputation was performed taking family structure into account. For each population (Asian and European) .ped- and .map-formatted files (see link in External Reference section) are provided. Genome browser tracks can be found here: hub_22505_CleftDeNovoCNVs2013 (see links in External References section) hub_22505_cnvCleftTriosBeaty2012 (see links in External References section) hub_22505_CleftDeNovoCNVs2013hg19 (see links in External References section) hub_22505_cnvCleftTriosBeaty2012hg19 (see links in External References section) **This is restricted-access human data.** To gain access to this data, you must first go through the [process outlined here](/odocs/data-guidelines/).
DOI: 10.25550/vjy
title: microCT - Bone Tissue of a K14-Cre;Fgfr2flfl mouse at P0

description: Mouse ID: ZZ236 This dataset includes microCT scans of the skull of a K14-Cre;Fgfr2flfl mouse at P0. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vma
title: microCT - Bone Tissue of Tgfbr2fl/+ Control mouse at E18.5

description: Mouse ID: JI216 This dataset includes microCT scans of the skulls of a Tgfbr2fl/+ Control mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vxr
title: Micro-CT images of adult mouse skulls, Collaborative Cross NOD x NZO

description: The dataset consists of a set of images for 20 mice with one parent from the NOD strain, and the other from the NZO strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/tqm
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm399

description: See link to the data preparation protocols for this study in the Additional Information section See links to Genome Browser in the Additional Information section. **Enhancer location:** Mouse genome mm9, chr6: 4438997-4440635 **Name:** mCF85 **Vista Enhancer ID:** mm399 **Nearest craniofacial gene or locus:** Col1A2 **Enhancer expression:** negative This data set includes the following: * A .pdf file that summarizes the whole-mount data for the tested element. This file includes light microscopy whole-mount images of the LacZ reporter gene expression in mouse embryos, a summary of the annotation of the expression pattern, the DNA sequence of the tested element in Fasta format, and the sequences of the primers used to generate the test construct. Follow corresponding link in the Additional Information section to see this information in the Vista Enhancer Browser at Lawrence Berkeley Laboratory * Tested element.txt: Download the text file mCF85metadata.txt from the External Reference section
DOI: 10.25550/tww
title: microCT - Soft Tissue of an Msx1+/+ Control mouse at E13.5

description: Mouse ID: AH280 This dataset includes microCT scans of the skull of an Msx1+/- Control mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/txp
title: microCT - Bone Tissue of Myf5-Cre; Smad4 mouse at E16.5

description: Mouse ID: DH219 This dataset includes microCT scans of the skull of a Myf5-Cre;Smad4 mouse at E16.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/v3p
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm612

description: See link to the data preparation protocols for this study in the Additional Information section The results are also presented as tracks on the Genome Browser (see links in the Additional Information section) **Enhancer location:** Mouse genome mm9, chr8:26653487-26656234 **Name:** mCF161 **Vista Enhancer ID:** mm612 **Nearest craniofacial gene or locus:** Fgfr1 **Enhancer expression:** positive **Tissues where active:** branchial arch, eye, nose, hindbrain, forebrain, limb, midbrain **Comment on OPT files:** none This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format).[.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/v94
title: microCT - Bone Tissue of C57BL6J mouse at E18.5

description: Mouse ID: JI207 This dataset includes a microCT scan of the skull of a C57BL6J mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/ve2
title: microCT - Soft Tissue of an Msx1+/- mouse at E17.5

description: Mouse ID: AH241 This dataset includes microCT scans of the skull of an Msx1+/- mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vf2
title: MicroCT imaging of csf1ra(mh5) mutant adult zebrafish

description: MicroCT imaging of csf1ra(mh5) mutant adualt zebrafish
DOI: 10.25550/vfw
title: microCT - Bone Tissue of Wnt1-Cre;Tgbr2fl/fl;tgfb2+ mouse at E18.5

description: This dataset includes 1 microCT scan of the skull of a Wnt1-Cre; Tgfbr2fl/fl; tgfb2+ mouse at E18.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vnp
title: Transgenic Mouse Enhancer Assay - Vista Enhancer ID: mm466

description: See link to the data preparation protocols for this study in the Additional Information section **Enhancer location:** Mouse genome mm9, chr16: 15084685-15085804 **Name:** mCF152 **Vista Enhancer ID:** mm466 **Nearest craniofacial gene or locus:** Snai2 **Enhancer expression:** positive **Tissues where active:** branchial arch, nose, tail, hindbrain, limb **Comment on OPT files:** none This data set includes the following: * 4 movie (.avi) files: A CLIP file that provides an overview of the 3-D model generated by Optical Projection Tomography (OPT)Thresholding-based false-color representation shows unstained regions of the embryo in green, LacZ signal in red. In addition, 3 movies representing a pass-through view of the OPT model in the coronal, sagittal, or transverse plane. * 4 files in .tgz format. Each of these corresponds to one of the .avi files and unzips to a set of .png files, each of which represents the individual frames of the movie (and, in case of the transverse/sagittal/coronal movies, can be used to retrieve individual virtual sections through features of interest in .png image format). [.tgz files can be unzipped with WinZip or Stuffit on a PC or Mac. On linux, treat the file as a gzipped .tar file: gunzip &lt; file.tgz | tar xvf - ]
DOI: 10.25550/vre
title: microCT - Soft Tissue of a Msx1-/- mouse at E17.5

description: Mouse ID: AH242 This dataset includes microCT scans of the skull of an Msx1-/- mouse at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vst
title: Micro-CT images of adult mouse skulls, Collaborative Cross 129S1 x A/J

description: The dataset consists of a set of images for 18 mice with one parent from the 129S1 strain and the other from the A/J strain. For each mouse we provide an image file in .aim format, a .txt file with the image data, and a .hx file. Morphometrics will be added for the data as measurements are completed.
DOI: 10.25550/vt6
title: microCT - Soft Tissue of a K14-Cre;Tgfbr2fl/fl mouse at E13.5

description: Mouse ID: AS344 This dataset includes microCT scans of the skull of a K14-Cre;Tgfbr2fl/fl mouse at E13.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format
DOI: 10.25550/vw0
title: microCT - Bone Tissue of Msx1 Control mouse at E17.5

description: This dataset includes microCT scans of the skulls of Msx1 Control mice at E17.5. The scan is in NiFTI format. See Help section for a list of free applications to view files in NiFTI format