cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20657694
title: LC-MS and gene expression.xlsx

description: Metabolites of the fecal supernatants were analyzed at Chalmers Mass Spectrometry Infrastructure (Gothenburg, Sweden) using a non‐targeted liquid chromatography–mass spectrometry (LC‐MS) approach. Briefly, the analyses were carried out using reversed‐phase chromatography and hydrophilic interaction chromatography with both positive and negative electrospray ionization. The samples of each study group were analyzed in separate batches, which included its own quality control samples. The analytical workflow named “notame”, described by Zheng et al, was used to pre‐process the acquired data and included drift correction within and between batches, data imputation was done using the <em>missForest</em> R package and clustering of features was done to remove weak and repeated features(24). Log10 transformation was applied prior between‐batch‐correction to reduce possible batch effects caused by the instrument <br> For gene expression data, a custom RT² PCR Array (Qiagen) was analyzed in a Quantstudio 12K Flex Real-Time PCR System (Applied Biosystems, Foster City, CA, USA) using the RT² qPCR SYBR Green ROX MasterMix (Qiagen). The gene expression custom array comprised 96 genes (supplementary table 1), including 5 housekeeping (HK) genes (GAPDH, HPRT1, RPLP0, ACTB, B2M) and quality 4 controls (positive PCR control, reverse transcription control, genomic DNA control, negative template control). All samples passed the quality controls. Missing values and CT values &gt;38 were set to 38. Genes were excluded from the analysis if &gt;50% of the samples had missing or very high CT values (CT&gt;36). In total, 18 genes were excluded from the Caco-2 cell analysis, and 19 genes were excluded from the colonoid analysis. Normalized values are expressed as 2-(CT Target gene-mean CT of HK genes)
DOI: 10.20372/aau_rdr/y1vli1/wvattg
title: Hanamaryame Getenet_Magnitude and Factors Associated with Unintended Pregnancy among Pregnant Women Attending Antenatal Care in Addis Ababa.tab

description: :unav
DOI: 10.20372/aau_rdr/y1vli1
title: Magnitude and Factors Associated with Unintended Pregnancy among Pregnant Women Attending Antenatal Care in Addis Ababa, Ethiopia

description: It is a dataset used to examine the magnitude and factors associated with unintended pregnancy among pregnant women attending antenatal care in Arada and Yeka sub-cities, Addis Ababa.
DOI: 10.6084/m9.figshare.20657826
title: G-Block all mutants

description: A list with G-blocks used for the generation of several constructs with allterations in the flexibel tail of the prion protein.
DOI: 10.6084/m9.figshare.20657826.v1
title: G-Block all mutants

description: A list with G-blocks used for the generation of several constructs with allterations in the flexibel tail of the prion protein.
DOI: 10.20372/aau_rdr/lmd8qz/c8sr4l
title: Negesse Dadi_Determinants of Chronic Malnutrition among Children aged 6-59 Months in Burayu town.tab

description: :unav
DOI: 10.20372/aau_rdr/lmd8qz
title: Determinants of Chronic Malnutrition among Children aged 6-59 Months in Burayu town, Oromia special zone, Central Ethiopia

description: This study examines critical risk factors for chronic malnutrition among children aged 6-59 months.
DOI: 10.6084/m9.figshare.20657919
title: Glavaschi et al Immediate predation risk selection analysis DATASET.xlsx from Immediate predation risk alters the relationship between potential and realised selection on male traits in the Trinidad guppy <i>Poecilia reticulata</i>

description: dataset
DOI: 10.6084/m9.figshare.20657919.v1
title: Glavaschi et al Immediate predation risk selection analysis DATASET.xlsx from Immediate predation risk alters the relationship between potential and realised selection on male traits in the Trinidad guppy <i>Poecilia reticulata</i>

description: dataset
DOI: 10.5281/zenodo.7025253
title: Raw data article 1

description: The spreadsheet contains the HPLC integration peaks monitoring the photolytic and photocatalytic degradation of the antibiotic ciprofloxacin (CIP) in milliQ water. The initial concentration of CIP is 10 mg/L. In the spreadsheets is shown the obtainment of 1st order kinetic constant rates for different photoreactor designs using 2, 3, 4 or 6 UVA-LED strips around the reactor, distanced 10 or 15 mm from the reactor's walls. The influence of different controlled periodic illumination's duty cycle (0.50 and 0.75) is also shown. Calculations of EEO (electrical energy per order consumption) are also made for each reactor set up. The irradiance values for each photoreactor design calculated by an optical software is presented as planar projections of the cylindrical reactor. Images showing the radiant flux in the photoreactor's middle cross section obtained by the software are also shown Finally, a full factorial design of experiments is made to obtain a model of prediction of kinetic constant rates and EEO values. Predicted vs experimental values are plotted.
DOI: 10.5281/zenodo.7025252
title: Raw data article 1

description: The spreadsheet contains the HPLC integration peaks monitoring the photolytic and photocatalytic degradation of the antibiotic ciprofloxacin (CIP) in milliQ water. The initial concentration of CIP is 10 mg/L. In the spreadsheets is shown the obtainment of 1st order kinetic constant rates for different photoreactor designs using 2, 3, 4 or 6 UVA-LED strips around the reactor, distanced 10 or 15 mm from the reactor's walls. The influence of different controlled periodic illumination's duty cycle (0.50 and 0.75) is also shown. Calculations of EEO (electrical energy per order consumption) are also made for each reactor set up. The irradiance values for each photoreactor design calculated by an optical software is presented as planar projections of the cylindrical reactor. Images showing the radiant flux in the photoreactor's middle cross section obtained by the software are also shown Finally, a full factorial design of experiments is made to obtain a model of prediction of kinetic constant rates and EEO values. Predicted vs experimental values are plotted.
DOI: 10.5281/zenodo.7007370
title: Data release for Tests of General Relativity with GWTC-3

description: This is the full posterior samples release of the following analyses reported in the paper Tests of General Relativity with GWTC-3 from the LIGO Scientific Collaboration, Virgo Collaboration, and KAGRA Collaboration: Inspiral-merger-ringdown consistency test (Sec IV B): <strong><em>IGWN-GWTC3-TGR-v1-imr.zip</em></strong> Lorentz invariance violation test (Sec VI): <strong><em>IGWN-GWTC3-TGR-v1-liv.zip</em></strong> Parametrized tests of general relativity (Sec V A): <strong><em>IGWN-GWTC3-TGR-v1-par.zip</em></strong> Ringdown test (Sec VIII A): <em><strong>IGWN-GWTC3-TGR-v1-rin.zip</strong></em> Spin-induced quadrupole moment test (Sec V B): <em><strong>GWN-GWTC3-TGR-v1-sim.zip</strong></em> Each zip file contains HDF5 files that can either be read directly with standard HDF5 tools or using PESummary (https://docs.ligo.org/lscsoft/pesummary/). The curated data set used for producing the figures and table in the paper can be found in https://dcc.ligo.org/LIGO-P2100456/public. If you make use of these data or software in your own work, please include the following acknowledgment. LIGO Laboratory and Advanced LIGO are funded by the United States National Science Foundation (NSF) as well as the Science and Technology Facilities Council (STFC) of the United Kingdom, the Max-Planck-Society (MPS), and the State of Niedersachsen/Germany for support of the construction of Advanced LIGO and construction and operation of the GEO600 detector. Additional support for Advanced LIGO was provided by the Australian Research Council. Virgo is funded, through the European Gravitational Observatory (EGO), by the French Centre National de Recherche Scientifique (CNRS), the Italian Istituto Nazionale di Fisica Nucleare (INFN) and the Dutch Nikhef, with contributions by institutions from Belgium, Germany, Greece, Hungary, Ireland, Japan, Monaco, Poland, Portugal, Spain. The construction and operation of KAGRA are funded by Ministry of Education, Culture, Sports, Science and Technology (MEXT), and Japan Society for the Promotion of Science (JSPS), National Research Foundation (NRF) and Ministry of Science and ICT (MSIT) in Korea, Academia Sinica (AS) and the Ministry of Science and Technology (MoST) in Taiwan. Unless otherwise specified, the contents of this release are licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ or send a letter to Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.
DOI: 10.5281/zenodo.7025260
title: Raw output data from ColabFold modelling for the paper 'Interaction of C21ORF2 with a domain of NEK1 mutated in human diseases is vital for NEK1 function in human cells'

description: <strong>Raw output data from ColabFold modelling for the paper 'Interaction of C21ORF2 with a domain of NEK1 mutated in human diseases is vital for NEK1 function in human cells'</strong> <strong>File descriptions:</strong> <strong>NEK11160endC21ORF2_amber_2e60f_relaxed_rank_1_model_1_fixed.pdb</strong><br> ColabFold output PDB file - Rank 1 model <strong>NEK11160endC21ORF2_amber_2e60f_relaxed_rank_2_model_2_fixed.pdb</strong><br> ColabFold output PDB file - Rank 2 model <strong>NEK11160endC21ORF2_amber_2e60f_relaxed_rank_3_model_4_fixed.pdb</strong><br> ColabFold output PDB file - Rank 3 model <strong>NEK11160endC21ORF2_amber_2e60f_relaxed_rank_4_model_3_fixed.pdb</strong><br> ColabFold output PDB file - Rank 4 model <strong>NEK11160endC21ORF2_amber_2e60f_relaxed_rank_5_model_5_fixed.pdb</strong><br> ColabFold output PDB file - Rank 5 model <strong>NEK11160endC21ORF2_amber_2e60f_coverage.png</strong><br> ColabFold output chart - MSA sequence coverage <strong>NEK11160endC21ORF2_amber_2e60f_PAE.png</strong><br> ColabFold output chart - PAE for each model <strong>NEK11160endC21ORF2_amber_2e60f_plddt.png</strong><br> ColabFold output chart - predicted IDDT per position <strong>Supplementary Excel file 1</strong><br> List of residues predicted to be involved in intermolecular interactions, and the type of interaction (based on PDB files for each models, generated using BIOVIA Discovery Studio 2021)
DOI: 10.6084/m9.figshare.20372613
title: Rep_1 plasmids

description: List of plasmids encoding a Rep_1 replication initiation protein, their accession number and meta data.
DOI: 10.6084/m9.figshare.20372595
title: Table S2

description: List of plasmids that encode a Rep_PriCT replication initiation protein, their accession number and meta data
DOI: 10.6084/m9.figshare.20372598
title: Table S3

description: List of plasmids encoding a Rep_3 type replication initiation protein, their accession number and meta data.
DOI: 10.6084/m9.figshare.20372598.v1
title: Table S3

description: List of plasmids encoding a Rep_3 type replication initiation protein, their accession number and meta data.
DOI: 10.15129/7af1b8b1-8566-460c-86f6-ad4815c4ea53
title: Data for: "Streaming-CNN Modulation Classification Demonstration"

description: Associated files for modulation classification demo showcasing streaming-CNN. Instructions for using the dataset are included in a Readme file.
DOI: 10.6084/m9.figshare.20658009
title: Raw data for all figures (including the data for the supplementary figures and tables) from Volatile-mediated between-plant communication in Scots pine and the effects of elevated ozone

description: Conifers are dominant tree species in boreal forests, but are susceptible to attack by bark beetles. Upon bark beetle attack, conifers release substantial quantities of volatile organic compounds known as herbivore-induced plant volatiles (HIPVs). Earlier studies of broadleaved plants have shown that HIPVs provide information to neighbouring plants, which may enhance their defenses. However, the defence responses of HIPV-receiver plants have not been described for conifers. Here we advance knowledge of plant–plant communication in conifers by documenting a suite of receiver-plant responses to bark-feeding-induced volatiles. Scots pine seedlings exposed to HIPVs were more resistant to subsequent weevil feeding and received less damage. Receiver plants had both induced and primed volatile emissions and their resin ducts had an increased epithelial cell (EC) mean area and an increased number of cells located in the second EC layer. Importantly, HIPV exposure increased stomatal conductance and net photosynthesis rate of receiver plants. Receiver-plant responses were also examined under elevated ozone conditions and found to be significantly altered. However, the final defense outcome was not affected. These findings demonstrate that HIPVs modulate conifer metabolism through responses spanning photosynthesis and chemical defense. The responses are adjusted under ozone stress, but the defense benefits remain intact.
DOI: 10.6084/m9.figshare.20658009.v1
title: Raw data for all figures (including the data for the supplementary figures and tables) from Volatile-mediated between-plant communication in Scots pine and the effects of elevated ozone

description: Conifers are dominant tree species in boreal forests, but are susceptible to attack by bark beetles. Upon bark beetle attack, conifers release substantial quantities of volatile organic compounds known as herbivore-induced plant volatiles (HIPVs). Earlier studies of broadleaved plants have shown that HIPVs provide information to neighbouring plants, which may enhance their defenses. However, the defence responses of HIPV-receiver plants have not been described for conifers. Here we advance knowledge of plant–plant communication in conifers by documenting a suite of receiver-plant responses to bark-feeding-induced volatiles. Scots pine seedlings exposed to HIPVs were more resistant to subsequent weevil feeding and received less damage. Receiver plants had both induced and primed volatile emissions and their resin ducts had an increased epithelial cell (EC) mean area and an increased number of cells located in the second EC layer. Importantly, HIPV exposure increased stomatal conductance and net photosynthesis rate of receiver plants. Receiver-plant responses were also examined under elevated ozone conditions and found to be significantly altered. However, the final defense outcome was not affected. These findings demonstrate that HIPVs modulate conifer metabolism through responses spanning photosynthesis and chemical defense. The responses are adjusted under ozone stress, but the defense benefits remain intact.
DOI: 10.6084/m9.figshare.16909126.v2
title: Artificial Intelligence Predicates Tipping Points of Marine Phytoplankton Responses to Multiple Climate Stressors

description: Data for phytoplankton resistance model training and testing.
DOI: 10.5281/zenodo.7025286
title: Monitoring of ciprofloxacin degradation by UV-A LED photolysis and photocatalysis under different scenarios

description: The spreadsheet contains the HPLC integration peaks monitoring the photolytic and photocatalytic degradation of the antibiotic ciprofloxacin (CIP) in milliQ water. The initial concentration of CIP is 10 mg/L. In the spreadsheets is shown the obtainment of 1st order kinetic constant rates for different photoreactor designs using 2, 3, 4 or 6 UVA-LED strips around the reactor, distanced 10 or 15 mm from the reactor's walls. The influence of different controlled periodic illumination's duty cycle (0.50 and 0.75) is also shown. Calculations of EEO (electrical energy per order consumption) are also made for each reactor set up. The irradiance values for each photoreactor design calculated by an optical software is presented as planar projections of the cylindrical reactor. Images showing the radiant flux in the photoreactor's middle cross section obtained by the software are also shown Finally, a full factorial design of experiments is made to obtain a model of prediction of kinetic constant rates and EEO values. Predicted vs experimental values are plotted.
DOI: 10.5281/zenodo.7025284
title: Monitoring of ciprofloxacin degradation by UV-A LED photolysis and photocatalysis under different scenarios

description: The spreadsheet contains the HPLC integration peaks monitoring the photolytic and photocatalytic degradation of the antibiotic ciprofloxacin (CIP) in milliQ water. The initial concentration of CIP is 10 mg/L. In the spreadsheets is shown the obtainment of 1st order kinetic constant rates for different photoreactor designs using 2, 3, 4 or 6 UVA-LED strips around the reactor, distanced 10 or 15 mm from the reactor's walls. The influence of different controlled periodic illumination's duty cycle (0.50 and 0.75) is also shown. Calculations of EEO (electrical energy per order consumption) are also made for each reactor set up. The irradiance values for each photoreactor design calculated by an optical software is presented as planar projections of the cylindrical reactor. Images showing the radiant flux in the photoreactor's middle cross section obtained by the software are also shown Finally, a full factorial design of experiments is made to obtain a model of prediction of kinetic constant rates and EEO values. Predicted vs experimental values are plotted.
DOI: 10.6084/m9.figshare.20658124.v1
title: Meta-data from Top-down response to spatial variation in productivity and bottom-up response to temporal variation in productivity in a long-term study of desert ants

description: Under the Ecosystem Exploitation Hypothesis ecosystem productivity predicts trophic complexity, but it is unclear if spatial and temporal drivers of productivity have similar impacts. Long-term studies are necessary to capture temporal impacts on trophic structure in variable ecosystems such as deserts. We sampled ants and measured plant resources in the Simpson Desert, central Australia over a 22-year period, during which rainfall varied 10-fold. We sampled dune swales (higher nutrient) and crests (lower nutrient) to account for spatial variation in productivity. We asked how temporal and spatial variation in productivity affects the abundance of ant trophic guilds. Precipitation increased vegetation cover, with the difference more pronounced on dune crests; seeding and flowering also increased with precipitation. Generalist activity increased over time, irrespective of productivity. Predators were more active in more productive (swale) habitat, i.e. spatial impacts of productivity were greatest at the highest trophic level. By contrast, herbivores (seed harvesters and sugar feeders) increased with long-term rainfall; seed harvesters also increased with as seeding increased. Temporal impacts of productivity were therefore greatest for low trophic levels. Whether productivity variation leads to top-down or bottom-up structured ecosystems thus depends on the scale and dimension (spatial or temporal) of productivity.
DOI: 10.6084/m9.figshare.20658124
title: Meta-data from Top-down response to spatial variation in productivity and bottom-up response to temporal variation in productivity in a long-term study of desert ants

description: Under the Ecosystem Exploitation Hypothesis ecosystem productivity predicts trophic complexity, but it is unclear if spatial and temporal drivers of productivity have similar impacts. Long-term studies are necessary to capture temporal impacts on trophic structure in variable ecosystems such as deserts. We sampled ants and measured plant resources in the Simpson Desert, central Australia over a 22-year period, during which rainfall varied 10-fold. We sampled dune swales (higher nutrient) and crests (lower nutrient) to account for spatial variation in productivity. We asked how temporal and spatial variation in productivity affects the abundance of ant trophic guilds. Precipitation increased vegetation cover, with the difference more pronounced on dune crests; seeding and flowering also increased with precipitation. Generalist activity increased over time, irrespective of productivity. Predators were more active in more productive (swale) habitat, i.e. spatial impacts of productivity were greatest at the highest trophic level. By contrast, herbivores (seed harvesters and sugar feeders) increased with long-term rainfall; seed harvesters also increased with as seeding increased. Temporal impacts of productivity were therefore greatest for low trophic levels. Whether productivity variation leads to top-down or bottom-up structured ecosystems thus depends on the scale and dimension (spatial or temporal) of productivity.
DOI: 10.6084/m9.figshare.20658127
title: Data from Top-down response to spatial variation in productivity and bottom-up response to temporal variation in productivity in a long-term study of desert ants

description: Under the Ecosystem Exploitation Hypothesis ecosystem productivity predicts trophic complexity, but it is unclear if spatial and temporal drivers of productivity have similar impacts. Long-term studies are necessary to capture temporal impacts on trophic structure in variable ecosystems such as deserts. We sampled ants and measured plant resources in the Simpson Desert, central Australia over a 22-year period, during which rainfall varied 10-fold. We sampled dune swales (higher nutrient) and crests (lower nutrient) to account for spatial variation in productivity. We asked how temporal and spatial variation in productivity affects the abundance of ant trophic guilds. Precipitation increased vegetation cover, with the difference more pronounced on dune crests; seeding and flowering also increased with precipitation. Generalist activity increased over time, irrespective of productivity. Predators were more active in more productive (swale) habitat, i.e. spatial impacts of productivity were greatest at the highest trophic level. By contrast, herbivores (seed harvesters and sugar feeders) increased with long-term rainfall; seed harvesters also increased with as seeding increased. Temporal impacts of productivity were therefore greatest for low trophic levels. Whether productivity variation leads to top-down or bottom-up structured ecosystems thus depends on the scale and dimension (spatial or temporal) of productivity.
DOI: 10.6084/m9.figshare.20658127.v1
title: Data from Top-down response to spatial variation in productivity and bottom-up response to temporal variation in productivity in a long-term study of desert ants

description: Under the Ecosystem Exploitation Hypothesis ecosystem productivity predicts trophic complexity, but it is unclear if spatial and temporal drivers of productivity have similar impacts. Long-term studies are necessary to capture temporal impacts on trophic structure in variable ecosystems such as deserts. We sampled ants and measured plant resources in the Simpson Desert, central Australia over a 22-year period, during which rainfall varied 10-fold. We sampled dune swales (higher nutrient) and crests (lower nutrient) to account for spatial variation in productivity. We asked how temporal and spatial variation in productivity affects the abundance of ant trophic guilds. Precipitation increased vegetation cover, with the difference more pronounced on dune crests; seeding and flowering also increased with precipitation. Generalist activity increased over time, irrespective of productivity. Predators were more active in more productive (swale) habitat, i.e. spatial impacts of productivity were greatest at the highest trophic level. By contrast, herbivores (seed harvesters and sugar feeders) increased with long-term rainfall; seed harvesters also increased with as seeding increased. Temporal impacts of productivity were therefore greatest for low trophic levels. Whether productivity variation leads to top-down or bottom-up structured ecosystems thus depends on the scale and dimension (spatial or temporal) of productivity.
DOI: 10.17632/hdwyxx8h6k.1
title: QUABIO_Pseudoophonus

description: Data on the gut microbiome of Pseudoophonus rufipes in relation to experimental conditions: conventional agriculture [CNV] and organic agriculture [ORG];