cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/y2s67z8tw9.1
title: Human single nuclear RNA seq PoPH and non-PoPH Cirrhosis Liver

description: snRNAseq data from PoPH (N=4) and non-PoPH cirrhosis ("Control", N=5) human adult liver tissue. Tissue was snap frozen during liver transplant operation, cold enzymatic digestion into single nuclei suspension (using modified Humphrey's Kidney protocol), and subjected to snRNAseq using 10X Chromium platform. H5 files are provided, which have been generated from FASTQ files using the CellRanger cloud platform.
DOI: 10.17632/v7wy5wwc8c.1
title: Amplicon capture phylogenomics provides new insights into the phylogeny and evolution of alpine Parnassius butterflies (Lepidoptera: Papilionidae)

description: Appendixes to the paper ;  compressed files ; zip files ; rar file
DOI: 10.17632/v7wy5wwc8c.2
title: Amplicon capture phylogenomics provides new insights into the phylogeny and evolution of alpine Parnassius butterflies (Lepidoptera: Papilionidae)

description: Appendixes to the paper ;  compressed files ;  rar files
DOI: 10.17632/v7wy5wwc8c.3
title: Amplicon capture phylogenomics provides new insights into the phylogeny and evolution of alpine Parnassius butterflies (Lepidoptera: Papilionidae)

description: Appendixes to the paper ;  compressed files ;  rar files
DOI: 10.23708/abnhei
title: Lamto GIS layer (vector dataset): Road network around the Lamto reserve (Côte d'Ivoire) in 2021

description: This dataset holds a vector layer for the road network in and around Lamto research station in 2021. We downloaded this dataset from OpenStreetMap. The attributes of the shapefile follow the OpenStreetMap (OMS) data schema.
DOI: 10.5519/qd.fv2rifjk
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (897 records)
DOI: 10.23708/tck6ih
title: Lamto GIS layer (raster dataset): vegetation cover of the Lamto reserve (Côte d'Ivoire) in 1988, after original map by Gautier (1990)

description: This dataset holds the map “Carte du recouvrement ligneux de la réserve de Lamto" published by Gautier, L. in 1990. We georeferenced the scanned paper map using ground control points derived from Google Maps. The dataset contains the scanned map, the ground control points and the raster layer of the georeferenced map.
DOI: 10.23708/4abyjn
title: Lamto GIS layer (raster dataset): Mosaic of topographical maps at a scale of 1 : 50 000 covering the Lamto reserve (Côte d'Ivoire)

description: This dataset holds the processing chain and the final mosaic of four georeferenced map sheets at a scale of 1 50 000 from the map series carte de l’Afrique de l’Ouest published by l’Institut Géographique National - Paris between 1960 and 1965. More precisely the mosaic holds the sheets: Gagnoa 2b (NB-30-XIII-2b), Gagnoa 2d (NB-30-XIII-2d), Dimbokro 1a (NB-30-XIV-1a) and Dimbokro 1c (NB-30-XIV-1c). The four sheets cover the area in and around the research station Lamto in Côte d’Ivoire. We shifted the mosaic 34m in X and 20m in Y based on the best available information to correct the datum to WGS84.
DOI: 10.23708/oqlkt3
title: Lamto GIS layer (vector dataset): Boundary of the Lamto reserve (Côte d'Ivoire) in 1988

description: This dataset holds the boundary of the nature reserve Lamto in Côte d'Ivoire. We digitized the boundary from the map “Carte du recouvrement ligneux de la réserve de Lamto" published by Gautier in 1990. Bandama river delimits the nature reserve naturally in the southwest. The source map does not indicate if the boundary of the nature reserve follows the bank or the mid-channel of the stream. The dataset contains two shapefiles for both situations.
DOI: 10.15151/esrf-dc-1102520799
title: NORWAY BAG

description: The fifteen PIs associated to this proposal represent the entire crystallography community in Norway and are affiliated to the major Norwegian universities. The research interests of the PIs and their collaborators revolves around topics linked to structural biology and material sciences. We apply for beam time for single- and multi-wavelength MX, Bio-SAXS and Cryo-EM, in support of our research projects funded e.g. by the Research Council of Norway and the ERC. Examples of research projects or topics are carbohydrate-active proteins of medical or bioeconomic relevance, inhibition of DNA repair enzymes, metalloprotein function and catalysis, regulation of cell-cycle processes, enzyme discovery, antibiotic resistance/drug-discovery and neurological diseases. Our overarching aim is to use bright synchrotron sources to produce high quality science.
DOI: 10.25829/idiv.3532-fh8eya
title: Plant whole-genome characteristics
DOI: 10.6084/m9.figshare.22226326
title: Leaf vein topology confers water transport efficiency

description: The evolution of xylem vessels and dense leaf venation in angiosperms enabled unprecedented increases in water transport and CO2 assimilation rates. We tested the hypothesis that independent of vein density, high leaf vein topological efficiency (<em>VTE</em>), reduces the extraxylary pathlength, benefitting whole-leaf conductance, reducing carbon investment and releasing space for light capture. We developed a novel approach quantifying the effect of vein topology on extraxylary pathlength, measured minor vein and stomata structure, and constructed leaf pressure-volume curves across 52 phylogenetically diverse angiosperms. For a given vein density, high <em>VTE</em> conferred by dense free-ending veinlets shortened the extraxylary pathlength by up to 11%. High <em>VTE</em> correlated with high stomatal conductance, non-vein area fraction for light capture, and low leaf mass per area. Our findings identify <em>VTE</em> as an important measure of the use of leaf space and biomass, and a key factor influencing plant adaptation to historical and future environmental conditions.
DOI: 10.6084/m9.figshare.22226326.v2
title: Leaf vein topology confers water transport efficiency

description: The evolution of xylem vessels and dense leaf venation in angiosperms enabled unprecedented increases in water transport and CO2 assimilation rates. We tested the hypothesis that independent of vein density, high leaf vein topological efficiency (<em>VTE</em>), reduces the extraxylary pathlength, benefitting whole-leaf conductance, reducing carbon investment and releasing space for light capture. We developed a novel approach quantifying the effect of vein topology on extraxylary pathlength, measured minor vein and stomata structure, and constructed leaf pressure-volume curves across 52 phylogenetically diverse angiosperms. For a given vein density, high <em>VTE</em> conferred by dense free-ending veinlets shortened the extraxylary pathlength by up to 11%. High <em>VTE</em> correlated with high stomatal conductance, non-vein area fraction for light capture, and low leaf mass per area. Our findings identify <em>VTE</em> as an important measure of the use of leaf space and biomass, and a key factor influencing plant adaptation to historical and future environmental conditions.
DOI: 10.15151/esrf-es-1096277848
title: Structural Biology at EMBL Grenoble, IBS-CIBB and IAB

description: This proposal clusters crystallography projects at the EMBL Grenoble, IBS and IAB working on different topics with a focus on nucleic acid-protein complexes and host-pathogen interactions. The proposers have long-standing experience in the use, as well as the development of beam lines for macromolecular crystallography and have participated in successive BAG applications over the years, mostly at the ESRF but also at other synchrotrons (i.e. Soleil, Petra II, Diamond, SLS)
DOI: 10.18154/rwth-2022-06816
title: Rohdaten, ergänzende Berechnungen und Informationen aus der vorgelegten Dissertation von Simone Herzog
DOI: 10.23728/b2share.7c71f47410544bc8aebd368222e7b9b2
title: The Serum Kynurenine Pathway Metabolic Profile is Associated with Overweight and Obesity in Multiple Sclerosis

description: This CSV data file comprises data from 106 persons with MS that participated in the RCT "Training and Energy Management Education to Improve Quality of Life in Persons With Multiple Sclerosis" (ClinicalTrials.gov Identifier: NCT04356248), which was performed in Valens rehabilitation clinic, Valens, Switzerland. Data have been collected between 13 July 2020 and 11 May 2022. Cross-sectional data include anthropometric, demographic, and disease-related data as well as kynurenine pathway (KP) metabolic data. Kynurenine pathway (KP) metabolic data have been obtained by targeted metabolomics at Bevital AS, Bergen, Norway. Within a cross-sectional analysis, associations of body mass index (BMI)-classified overweight and obesity with KP metabolite concentrations have been calculated using bivariate correlation analyses and ANCOVAs. Results have been presented in the original article entitled "The Serum Kynurenine Pathway Metabolic Profile is Associated with Overweight and Obesity in Multiple Sclerosis" (DOI:https://doi.org/10.1016/j.msard.2023.104592).
DOI: 10.5281/zenodo.5789258
title: LoGov South Africa Interview Report n°8

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789257
title: LoGov South Africa Interview Report n°8

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789244
title: LoGov South Africa Interview Report n°7

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789243
title: LoGov South Africa Interview Report n°7

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.7704412
title: Structural similarities between SAM and ATP recognition motifs and detection of ATP binding in a SAM binding DNA methyltransferase

description: We have provided all the necessary files, outputs, as well as the ReadMe file for this work to be redone.
DOI: 10.5281/zenodo.7704411
title: Structural similarities between SAM and ATP recognition motifs and detection of ATP binding in a SAM binding DNA methyltransferase

description: We have provided all the necessary files, outputs, as well as the ReadMe file for this work to be redone.
DOI: 10.5281/zenodo.5789226
title: LoGov South Africa Interview Report n°6

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789225
title: LoGov South Africa Interview Report n°6

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.7698459
title: FT51 Anonymous (3) 10-key tenoroon: measurements, photos, endoscopic video

description: Dataset of FT51 Anonymous 10-key tenoroon located in the Horniman Museum, London (Reg. nr. 2004.1044), containing detailed external and internal measurements, photos, and an endoscopic video.
DOI: 10.5281/zenodo.7698458
title: FT51 Anonymous (3) 10-key tenoroon: measurements, photos, endoscopic video

description: Dataset of FT51 Anonymous 10-key tenoroon located in the Horniman Museum, London (Reg. nr. 2004.1044), containing detailed external and internal measurements, photos, and an endoscopic video.
DOI: 10.5281/zenodo.5789215
title: LoGov South Africa Interview Report n°5

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789214
title: LoGov South Africa Interview Report n°5

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.6084/m9.figshare.22226353
title: Supplementary Material for: Triglycerides and Renal Outcomes according to Albuminuria and in Consideration of other Metabolic Syndrome Components in Diabetic US Veterans

description: Objective: Hypertriglyceridemia, a component of the metabolic syndrome, is a known independent predictor of albuminuria and chronic kidney disease (CKD) in the general population. Previous studies have shown that the relationship of triglycerides with outcomes changes across stages of CKD. Our objective is to examine the association of triglycerides independent of other metabolic syndrome components with renal outcomes in diabetic patients with or without CKD. Research Design and Methods: This retrospective cohort study included diabetic US veteran patients with valid data on triglycerides (TG), estimated glomerular filtration rate (eGFR) and albuminuria (UACR), between fiscal years 2004 to 2006. Using Cox models adjusted for clinical characteristics and laboratory markers, we evaluated the relationship of TG with incident albuminuria (stratified by eGFR category) and based on eGFR (stratified by baseline albuminuria categories). To evaluate the relationship of TG with time to end-stage renal disease (ESRD), we stratified models by baseline CKD stage (eGFR category) and baseline albuminuria stage ascertained at time of TG measurement. Results: In a cohort of 138,675 diabetic veterans, the mean±SD age was 65±11 years old, and included 3% females and 14% African Americans. The cohort also included 28% of patients with non-dialysis dependent CKD (eGFR&lt;60 mL/min/173m2), as well as 28% of patients with albuminuria (≥30 mg/g). The median[IQR] of serum TG was 148[100, 222] mg/dL. We observed a slight positive linear association between TG and incident CKD after adjustment for case-mix and laboratory variables among non-albuminuric and microalbuminuric patients. High TG levels were associated with ESRD in CKD 3A non-albuminuric patients and in CKD 3A and 4/5 in patients with microalbuminuria. Conclusions: In a large cohort, we have shown that elevated TG are associated with all kidney outcomes tested independently of other metabolic syndrome components in diabetic patients with normal eGFR and normal albumin excretion rate, but the association is weaker in some groups of diabetic patients with pre-existing renal complications.
DOI: 10.6084/m9.figshare.22226353.v1
title: Supplementary Material for: Triglycerides and Renal Outcomes according to Albuminuria and in Consideration of other Metabolic Syndrome Components in Diabetic US Veterans

description: Objective: Hypertriglyceridemia, a component of the metabolic syndrome, is a known independent predictor of albuminuria and chronic kidney disease (CKD) in the general population. Previous studies have shown that the relationship of triglycerides with outcomes changes across stages of CKD. Our objective is to examine the association of triglycerides independent of other metabolic syndrome components with renal outcomes in diabetic patients with or without CKD. Research Design and Methods: This retrospective cohort study included diabetic US veteran patients with valid data on triglycerides (TG), estimated glomerular filtration rate (eGFR) and albuminuria (UACR), between fiscal years 2004 to 2006. Using Cox models adjusted for clinical characteristics and laboratory markers, we evaluated the relationship of TG with incident albuminuria (stratified by eGFR category) and based on eGFR (stratified by baseline albuminuria categories). To evaluate the relationship of TG with time to end-stage renal disease (ESRD), we stratified models by baseline CKD stage (eGFR category) and baseline albuminuria stage ascertained at time of TG measurement. Results: In a cohort of 138,675 diabetic veterans, the mean±SD age was 65±11 years old, and included 3% females and 14% African Americans. The cohort also included 28% of patients with non-dialysis dependent CKD (eGFR&lt;60 mL/min/173m2), as well as 28% of patients with albuminuria (≥30 mg/g). The median[IQR] of serum TG was 148[100, 222] mg/dL. We observed a slight positive linear association between TG and incident CKD after adjustment for case-mix and laboratory variables among non-albuminuric and microalbuminuric patients. High TG levels were associated with ESRD in CKD 3A non-albuminuric patients and in CKD 3A and 4/5 in patients with microalbuminuria. Conclusions: In a large cohort, we have shown that elevated TG are associated with all kidney outcomes tested independently of other metabolic syndrome components in diabetic patients with normal eGFR and normal albumin excretion rate, but the association is weaker in some groups of diabetic patients with pre-existing renal complications.
DOI: 10.5281/zenodo.5789203
title: LoGov South Africa Interview Report n°4

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.5789202
title: LoGov South Africa Interview Report n°4

description: The interviews have been realised in the framework of the H2020-MSCA-RISE-2018 project “LoGov - Local Government and the Changing Urban-Rural Interplay” as part of the implementation phase of the project. The interviews have been conducted with experts in the field of public administration, public law and political science, both researchers and practitioners, with the aim of widening the scope of the Country Report on South Africa. To access the full transcription of this interview, the other interview reports on South Africa, and to receive more information about the project, please visit: https://www.logov-rise.eu/. This project has received funding from the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant agreement No 823961.
DOI: 10.5281/zenodo.7698480
title: FT52 Anonymous (9)6-key fagottino: measurements, photos, endoscopic video

description: Dataset of FT52 Anonymous (9) 6-key fagottino located in the Horniman Museum, London (Reg. nr. 14.5.47/278), containing detailed external and internal measurements, photos, and an endoscopic video.
DOI: 10.5281/zenodo.7698479
title: FT52 Anonymous (9)6-key fagottino: measurements, photos, endoscopic video

description: Dataset of FT52 Anonymous (9) 6-key fagottino located in the Horniman Museum, London (Reg. nr. 14.5.47/278), containing detailed external and internal measurements, photos, and an endoscopic video.