cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16613802.v2
title: MicroRNA miR-495 regulates the development of Hepatocellular Carcinoma by targeting C1q/tumor necrosis factor-related protein-3 (CTRP3)

description: Hepatocellular carcinoma (HCC) represents a type of lethal cancer in the world and its treatment options produce limited and unsatisfactory effectiveness. MicroRNAs (miRNAs) that play critical roles in tumorigenesis have shown promising clinical therapeutic potential. Here, we reported that miRNA-495 (miR-495) plays important roles in inhibiting HCC cell growth via its regulation of cell-cycle progression as well as senescence. MiR-495 showed low levels in human HCC tissues and cells. Overexpressing miR-495 in HCC cells caused strong cell growth inhibition, which results from cell-cycle arrest and senescence. CTRP3 functioned as a possible target of miR-495 in HCC cells by bioinformatics prediction and biological assay. By inhibiting the expression of CTRP3 with siRNA, HCC cells also showed similar growth inhibition as miR-495 overexpression. The re-expression of CTRP3 in HCC cells with high-level miR-495 abolished miR-495 and caused cell growth inhibition. These results strongly suggested that CTRP3 was the functional target that weakened the effects of miR-495 in HCC cells. The in vivo experiment demonstrated miR-495 overexpression had great therapeutic effects on HCC in xenograft. Above all, this research revealed that miR-495 is essential in suppressing HCC growth, and its application serves as a promising strategy for HCC treatment.
DOI: 10.6084/m9.figshare.13467461.v1
title: Additional file 2 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 2: Table S1. Clinicopathological, immunological and other molecular information of the 39 PCa patients. (a) Overall clinicopathological characteristics. (b) Detailed information for each patient. Pat: numeric patient ID; Pat_id: patient ID grouped by the overall grade. L: low grade; M: intermediate grade; H: high grade; Overall_Gleason_GrGp: overall ISUP grade group; pT: tumor stage; pN: nodal status; R: surgical margin status; Age_at_OP: age at operation; PSA_at_Diag: blood PSA level at diagnosis; Time (months): RFS time. A value of 0 corresponds to patients excluded for the reasons explained in the ‘Methods’ section (see ‘Patients and samples’); Status: status indicator. 1 means recurrence; DX name: tissue region name; ImageName: name of the scanned images; index_tumor_id: patient ID of TA1 (or TA); TA1_GrGp: grade group for TA1; T_GrGp: grade group for TA2.
DOI: 10.6084/m9.figshare.14516567.v1
title: Additional file 17 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 17: Table S16. Summary of all the key reagents.
DOI: 10.6084/m9.figshare.14516588.v1
title: Additional file 6 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 6: Table S5. Motif analysis results of human 5hmC gain.
DOI: 10.6084/m9.figshare.13467465
title: Additional file 4 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 4: Table S3. Copy number analysis of 105 PCa samples. (a) Log2 ratios indicating the CNA status are shown for all genes in all samples. Values were determined by overlapping gene locations with CNA segments as calculated by CopywriteR. In case more than one segment overlapped with a gene, number was chosen that had the highest absolute value. (b) Genes are shown with log2 ratios higher than 0.5 or lower than − 0.5 in at least one sample.
DOI: 10.6084/m9.figshare.14516582
title: Additional file 4 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 4: Table S3. Summary of 5hmC gain and loss regions in human MBs.
DOI: 10.6084/m9.figshare.13467463
title: Additional file 3 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 3: Table S2. Exome analysis of the peripheral blood cells and 105 prostate tumor punches in 39 patients. (a) Allele frequencies (AF) of somatic single nucleotide variants (SNVs) that were called by our bioinformatics pipeline. Genes with called SNV are indicated by an AF &gt; 0. A value of 0 indicates that no SNV was found in the respective genes. In our data, no gene was found with more than one called somatic SNV. (b) Number of samples per gene with called somatic SNV. (c) Protein domain analysis using DAVID.
DOI: 10.6084/m9.figshare.13467465.v1
title: Additional file 4 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 4: Table S3. Copy number analysis of 105 PCa samples. (a) Log2 ratios indicating the CNA status are shown for all genes in all samples. Values were determined by overlapping gene locations with CNA segments as calculated by CopywriteR. In case more than one segment overlapped with a gene, number was chosen that had the highest absolute value. (b) Genes are shown with log2 ratios higher than 0.5 or lower than − 0.5 in at least one sample.
DOI: 10.6084/m9.figshare.13467461
title: Additional file 2 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 2: Table S1. Clinicopathological, immunological and other molecular information of the 39 PCa patients. (a) Overall clinicopathological characteristics. (b) Detailed information for each patient. Pat: numeric patient ID; Pat_id: patient ID grouped by the overall grade. L: low grade; M: intermediate grade; H: high grade; Overall_Gleason_GrGp: overall ISUP grade group; pT: tumor stage; pN: nodal status; R: surgical margin status; Age_at_OP: age at operation; PSA_at_Diag: blood PSA level at diagnosis; Time (months): RFS time. A value of 0 corresponds to patients excluded for the reasons explained in the ‘Methods’ section (see ‘Patients and samples’); Status: status indicator. 1 means recurrence; DX name: tissue region name; ImageName: name of the scanned images; index_tumor_id: patient ID of TA1 (or TA); TA1_GrGp: grade group for TA1; T_GrGp: grade group for TA2.
DOI: 10.6084/m9.figshare.14516597.v1
title: Additional file 9 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 9: Table S8. Summary of similarity between human MBs and SmoA1-MBs (Peaks).
DOI: 10.6084/m9.figshare.13467469.v1
title: Additional file 6 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 6: Table S5. Proteomics data of 210 PCa samples with duplicates. (a) Sample information includes patient ID, clinical diagnosis, sample ID and batch design. (b) Protein matrix of log2 scaled intensity of 2371 proteins quantified in 210 PCa samples.
DOI: 10.6084/m9.figshare.13467467.v1
title: Additional file 5 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 5: Table S4. RNA-seq analysis. (a) Log2FCs (relative to all benign samples) for all genes across the tumor samples. (b) mRIN score per sample generated using mRIN (v1.2.0). (c) ETS family gene fusions observed in tumor samples using FusionCatcher: a value of 1 means that the fusion was observed in the respective sample but not its corresponding benign sample, otherwise the value is 0. (d) Normalized RNA-seq count data matrix.
DOI: 10.6084/m9.figshare.13467599
title: Additional file 2 of Mitochondrial dysfunction and consequences in calpain-3-deficient muscle

description: Additional file 2: FFold changes in WT and calpain-3 deficient myoblasts and myotubes.
DOI: 10.6084/m9.figshare.13467467
title: Additional file 5 of Convergent network effects along the axis of gene expression during prostate cancer progression

description: Additional file 5: Table S4. RNA-seq analysis. (a) Log2FCs (relative to all benign samples) for all genes across the tumor samples. (b) mRIN score per sample generated using mRIN (v1.2.0). (c) ETS family gene fusions observed in tumor samples using FusionCatcher: a value of 1 means that the fusion was observed in the respective sample but not its corresponding benign sample, otherwise the value is 0. (d) Normalized RNA-seq count data matrix.
DOI: 10.6084/m9.figshare.14516561.v1
title: Additional file 15 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 15: Table S14. DhMRs bound by both Tet1 and Nanog.
DOI: 10.6084/m9.figshare.14516585
title: Additional file 5 of Ten-eleven translocation protein 1 modulates medulloblastoma progression

description: Additional file 5: Table S4. Summary of annotation using 5hmC gain and 5hmC loss regions.
DOI: 10.15468/dl.4jn6h9
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus sintenisii Freyn"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094257-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rthjjv
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhododendron pachysanthum Hayata"
 ]
}

 The dataset includes 34 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094259-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psnfsw
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhaphidospora platyphylla (S.Moore) Bremek."
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094260-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4d37b9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus personata (L.) Jacq.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094258-240321170329656/datasets/export for details.
DOI: 10.15468/dl.cguxb7
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ridsdalea grandis (Korth.) J.T.Pereira"
 ]
}

 The dataset includes 16 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094261-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruzkyd
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus quangtriensis Hickel & A.Camus"
 ]
}

 The dataset includes 39 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094262-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3qmdhc
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ranunculus smirnovii Ovcz."
 ]
}

 The dataset includes 99 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094263-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7kg8b3
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carduus pycnocephalus L.",
 "HasCoordinate is true",
 "Country is Iceland",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094264-240321170329656/datasets/export for details.
DOI: 10.15468/dl.kjdm9e
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rhaphidura lowii (Ridl.) Bremek."
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094265-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.brwxar
title: Occurrence Download

description: A dataset containing 354372 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rosa canina L."
 ]
}

 The dataset includes 354372 records from 2621 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0094238-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.csz42a
title: Occurrence Download

description: A dataset containing 1073 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Culicoides punctatus Meigen"
 ]
}

 The dataset includes 1073 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066125-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cqpta
title: Occurrence Download

description: A dataset containing 2125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tachycineta thalassina (Swainson, 1827)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "BasisOfRecord is Specimen"
 ]
}

 The dataset includes 2125 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004390-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.367xb2
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.3148 47.90274,-87.8784 47.90274,-87.8784 49.01548,-90.3148 49.01548,-90.3148 47.90274))",
 "HasGeospatialIssue is false",
 "TaxonKey is Pelecanus Linnaeus, 1758",
 "Year 2015-2015"
 ]
}

 The dataset includes 51 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032078-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezbqh6
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 {
 "or" : [
 "TaxonKey is Colysis elliptica var. flexiloba (Christ) L.Shi & X.C.Zhang",
 "TaxonKey is Leptochilus ellipticus var. flexilobus (Christ) X.C.Zhang"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 108 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007556-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zjjsts
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Echinochloa crus-galli var. macera (Wiegand) Shinners"
 ]
}

 The dataset includes 49 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004390-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cwm4jk
title: Occurrence Download

description: A dataset containing 197 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-123.31196 32.90987,-114.6392 32.90987,-114.74761 35.54783,-116.22921 36.63193,-117.92762 37.96898,-119.55377 39.88421,-119.84286 42.12467,-121.79937 42.29204,-128.26266 42.26922,-127.10629 39.19762,-123.31196 32.90987))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Salmoniformes",
 "Year is 2018"
 ]
}

 The dataset includes 197 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025698-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auno2s
title: Occurrence Download

description: A dataset containing 115 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sidalcea malviflora subsp. patula C.L.Hitchc."
 ]
}

 The dataset includes 115 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004390-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qpvdu5
title: Occurrence Download

description: A dataset containing 1290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Botswana",
 "DatasetKey is Rapid Assessment Program (RAP) Biodiversity Survey Database",
 "TaxonKey is Animalia"
 ]
}

 The dataset includes 1290 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008209-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.btwecg
title: Occurrence Download

description: A dataset containing 205 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cladanthus eriolepis (Coss. ex Maire) Oberpr. & Vogt"
 ]
}

 The dataset includes 205 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0138971-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sshqmt
title: Occurrence Download

description: A dataset containing 74790 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Brazil",
 "Country is Mexico",
 "Country is Bolivia (Plurinational State of)",
 "Country is Peru",
 "Country is Argentina",
 "Country is Paraguay",
 "Country is Uruguay",
 "Country is Chile",
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Guyana",
 "Country is French Guiana",
 "Country is Costa Rica",
 "Country is Puerto Rico",
 "Country is Guatemala",
 "Country is Honduras",
 "Country is Belize",
 "Country is Dominican Republic",
 "Country is Haiti",
 "Country is Panama"
 ]
 },
 "TaxonKey is Anacardiaceae"
 ]
}

 The dataset includes 74790 records from 453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004390-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bq7yxz
title: Occurrence Download

description: A dataset containing 1596 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (iNaturalist Research-grade Observations, IMOS - Animal Tracking Facility - Acoustic Tracking - Quality Controlled Detections (2007 -2021))",
 "TaxonKey is Rhincodon typus Smith, 1828"
 ]
}

 The dataset includes 1596 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032092-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mgtud9
title: Occurrence Download

description: A dataset containing 29 species occurrences available in GBIF matching the query:
{
 "or" : [
 "TaxonKey is Polypodiodes bourretii (C.Chr. & Tardieu) W.M.Chu",
 "TaxonKey is Goniophlebium bourretii (C.Chr. & Tardieu) X.C.Zhang"
 ]
}

 The dataset includes 29 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007549-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yyx397
title: Occurrence Download

description: A dataset containing 682 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Chioglossa lusitanica Bocage, 1864"
 ]
}

 The dataset includes 682 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004391-150316153013904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bd386t
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cynanchum acutum subsp. sibiricum (Willd.) Rech.fil."
 ]
}

 The dataset includes 104 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008206-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rhepch
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinguicula moctezumae Zamudio & R.Z.Ortega"
 ]
}

 The dataset includes 22 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039282-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsoa4o
title: Occurrence Download

description: A dataset containing 35292 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lutra lutra (Linnaeus, 1758)",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 35292 records from 54 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004391-150410134957023/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gvmgqw
title: Occurrence Download

description: A dataset containing 175230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Carnegie Museum of Natural History - Mollusks"
 ]
}

 The dataset includes 175230 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039286-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.