cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/grx6mz4pjn
title: Genarris 2.0: A random structure generator for molecular crystals

description: Genarris is an open source Python package for generating random molecular crystal structures with physical constraints for seeding crystal structure prediction algorithms and training machine learning models. Here we present a new version of the code, containing several major improvements. A MPI-based parallelization scheme has been implemented, which facilitates the seamless sequential execution of user-defined workflows. A new method for estimating the unit cell volume based on the single molecule structure has been developed using a machine-learned model trained on experimental structures. A new algorithm has been implemented for generating crystal structures with molecules occupying special Wyckoff positions. A new hierarchical structure check procedure has been developed to detect unphysical close contacts efficiently and accurately. New intermolecular distance settings have been implemented for strong hydrogen bonds. To demonstrate these new features, we study two specific cases: benzene and glycine. Genarris finds the experimental structures of the two polymorphs of benzene and the three polymorphs of glycine.
DOI: 10.6084/m9.figshare.11550126.v1
title: Supplementary Material for: Duodenal Neuroendocrine Tumour Resection with a New Duodenal Full-Thickness Resection Device

description: Medicine
DOI: 10.6084/m9.figshare.16615966.v1
title: 2021_For_FigShare.xlsx

description: Here, using energy-subtractive synchrotron radiation tomography, we measured, the distribution of an inert gas (Xe) in the <i>in vivo</i> rabbit lung during Xe washin breathing maneuvers. The effects of convective flow rate, diffusion, and cardiac motion were also assessed. Fractal analysis of resulting gas concentration and tissue-density maps revealed that fractal dimension was always smaller for Xe than for tissue density, and that only for the gas, a length scale existed where fractal dimension approached unity. The length scale where this occurred was seen to correspond to that of a rabbit acinus, the terminal structure comprising only alveolated airways.
DOI: 10.6084/m9.figshare.25592331.v1
title: Supplementary Material for: Prognostic effects of RASSF1A, BRCA1, APC, and p16 promoter methylation in ovarian cancer: a meta-analysis

description: Introduction: DNA methylation plays an important role in the carcinogenesis, progression, and prognosis of various human cancers. RASSF1A, BRCA1, APC, and p16 are the frequently methylated genes among patients with ovarian cancer. Therefore, our study aimed to better determine the prognostic and cancer characteristics effects of RASSF1A, BRCA1, APC, and p16 promoter methylation in ovarian cancer patients.
Methods: Databases such as PubMed, Web of Science, EMBASE, CNKI, and WanFang were searched for published studies up to March 4, 2024. The outcomes are shown as OR and HR with their 95% CIs. Then, the random or fixed effect model was performed to evaluate the effect sizes.
Results: Finally, 27 articles were included in this meta-analysis. No significant relationships were observed between RASSF1A, BRCA1, and APC promoter methylation and the clinical prognostic (including overall survival and progression-free survival) and cancer characteristics (including ascites, lymph node metastasis, and pelvic peritoneal metastasis) in ovarian cancer. p16 promoter methylation was significantly related to poor PFS (HR=1.52, 95% CI=1.14 to 2.04) and OS (HR=1.39, 95% CI=1.06, to 1.83) in univariate, and poor PFS in multivariate Cox regression models (HR =1.42, 95% CI=1.05 to1.92). Besides, our results indicated that the clinical stage was associated with inferior OS while there was no significant association between tumor grade and OS.
Conclusion: RASSF1A, BRCA1, and APC promoter methylation were not significantly associated with clinical prognostic and cancer characteristics. P16 may be a useful biomarker for predicting PFS in ovarian cancer. Furthermore, the clinical stage was significantly associated with OS. In further research, more prospective and multicenter validation studies remain needed.
DOI: 10.17632/p8n49ggknc
title: Efficacy and safety of a diet enriched with EPA&DHA, turmeric extract and hydrolysed collagen in management of naturally-occurring osteoarthritis in cats. A prospective, randomised, blinded, placebo- and time-controlled study

description: This study aimed to evaluate a therapeutic diet containing a high level of EPA&DHA, with a specific EPA:DHA (0.69:1) ratio, turmeric extract and hydrolysed collagen, using four previously validated pain/functional outcomes on N = 30 cats with naturally occurring osteoarthritis (OA), over a 13-week (W) administration period followed by a 4-W wash-out.
The sample population was homogeneously distributed in a placebo-control and an experimental cohort. When compared to the placebo diet, cats receiving the therapeutic diet showed increased peak vertical force (P=0.017 at W16, with 64% responders) correlating to improved weight bearing; improved performance in the stairs assay compliance (P&lt;0.001 at W16, with 87% responders) signifying lessened fatigue related to OA-pain; increased nighttime actimetry (Cohort effect P=0.05, with 67% responders) suggesting improved spontaneous mobility and comfort; and reduced MI-CAT(V) score (Cohort effect P&lt;0.001, with 80% responders) indicating decreased functional alterations. Cats receiving the placebo diet deteriorated with time. The earliest signs of therapeutic response were determined at the W06 inflection point between both cohorts actimetric linear regressions, which was confirmed with the MI-CAT(V) intercohort differences at W08, W12 and W16 (P&lt;0.007). The MI-CAT(V) clinical metrology instrument was validated for inter-rater reliability, minimal placebo effect (&lt;15% responders) and clustering OA severity. Different at baseline on biomechanical assessments (P&lt;0.05), both moderate and severe OA clusters responded equally to the experimental therapeutic diet.
Based upon all outcomes and a lack of observed side effects, the test therapeutic diet presents a promising prospect for long term management of feline osteoarthritis.
DOI: 10.6084/m9.figshare.28754726.v1
title: Inequivalent systems with 6 players.txt

description: All independent sets on 6 players, the weighted voting systems they generate, and the non-normalized Banzhaf power index for each voting system.
DOI: 10.6084/m9.figshare.5110747.v3
title: Juniperus oxycedrus chorology

description: Distribution map of prickly juniper (<i>Juniperus oxycedrus</i>)<br><br>These maps were produced by combining numerous and heterogeneous data collected from atlas monographs providing complete species distribution maps, from national to regional atlases, occurrence geo-databases, scientific and grey literature.<br>The maps were created using ESRI shapefiles (*.shp, *.shx, *.dbf, *.prj files) archived in the ZIP file. Species range is mapped with polygon features (name suffix "plg"), which define continuous areas of occupancy of the species, and with point features (name suffix "pnt"), which identify more fragmented and isolated populations. If synanthropic occurrences are reported outside the species natural range, additional point and/or polygon shapefiles are also present (suffix "syn"). <br>Polygon borders delimiting species ranges are generalized across the mainland and sea boundaries. This offers the possibility to mask sea areas or to clip and extract the terrestrial range parts using GIS data layers of the users' choice. An additional version of polygon ranges are clipped with a coastline (name suffix "clip"), which have been derived from Natural Earth dataset "Admin 0 - Countries" 1:50M version 4.1.0 (https://www.naturalearthdata.com). <br><br>Please cite as:<br>Caudullo, G., Welk, E., San-Miguel-Ayanz, J., 2017. Chorological maps for the main European woody species. Data in Brief 12, 662-666. DOI: doi.org/10.1016/j.dib.2017.05.007 <br><br>Additional information and used references are on 'supplementary materials' document:<br>https://doi.org/10.6084/m9.figshare.5091901<br><br>Chorological maps are part of the "European Atlas of Forest Tree Species" project:<br>https://w3id.org/mtv/FISE-Comm/v01
DOI: 10.17632/9tw3ngnjjj
title: Targeted indoor residual insecticide applications shift Aedes aegypti age structure and arbovirus transmission potential

description: This dataset contains data for all dissected female Ae. aegypti from Merida, Yucatan, that were collected in treatment and control arms. A data dictionary is provided.
DOI: 10.6084/m9.figshare.12442703.v5
title: Forest Resilience Threshold Experiment (FoRTE) - Scaling and analysis of aboveground wood net primary production (ANPPw)

description: These data were collected in 2018 and 2019 at the University of Michigan Biological Station as a part of the Forest Resilience and Threshold Experiment (FoRTE), and were used in the analysis of aboveground wood net primary production (ANPPw) documented in Grigri et al. (<i>unpublished</i>). <br>Diameter growth increments of a sub-sample of stems from all canopy strata were used to infer ecosystem scale ANPPw. <i>Upper canopy </i>refers to stems ≥8cm diameter at breast height (DBH), <i>subcanopy </i>refers to stems 1-8cm DBH, and <i>seedling/saplings </i>refers to stems &lt;1cm DBH. Dendrometer bands were used to record repeated measures of <i>upper canopy </i>trees. Digital calipers were used for DBH measurements in the <i>subcanopy</i>, and base diameter and height measurements of <i>seedling/saplings.</i><i><br></i><i>FoRTE_all_trees.csv </i>is 2018 census data off all trees present in experimental plots. <i>DBL_dendrobands.csv </i>is data collected from multiple dendrometer bands at different stem heights on a single tree (see Grigri et al., <i>unpublished). FoRTE_LAI.csv </i>is leaf area index (LAI) estimated from hemispherical images taken throughout the growing season of 2019 (Atkins et al., 2020). <br>Download zip for R project data, and code. Please see README.R for details.
DOI: 10.17632/6vdfr627ny
title: Funchain et al JAAD 2024 Supplementary

description: Supplementary data for Funchain et al JAAD 2024
DOI: 10.6084/m9.figshare.23909814.v1
title: Simulated hydrological data for the Three-River Headwater Region under SSP585

description: This dataset includes all important hydrological components such as streamflow, baseflow, surface flow, soil moisture content, terrestrial water storage. The dataset is simulated by HEC-HMS using SSP5 scenarios of NorESM global climate model. It is available in the DSS format and can be open in HEC-DSSvalue software.<br>
DOI: 10.6084/m9.figshare.3494549.v2
title: A Statistical Inference Course Based on <i>p</i>-Values

description: Introductory statistical inference texts and courses treat the point estimation, hypothesis testing, and interval estimation problems separately, with primary emphasis on large-sample approximations. Here, I present an alternative approach to teaching this course, built around <i>p</i>-values, emphasizing provably valid inference for all sample sizes. Details about computation and marginalization are also provided, with several illustrative examples, along with a course outline. Supplementary materials for this article are available online.
DOI: 10.6084/m9.figshare.3860958.v1
title: PCR cycles above routine numbers do not compromise high-throughput DNA barcoding results

description: Supplementary material from Vierna <i>et al.</i> 2017.<br>The analyses are fully reproducible by running the script "script.R" from the /raw_data_R_function/function_files folder.
DOI: 10.17632/xw3zjwbw2w
title: Lightweight target detection for large-field ddPCR images based on improved YOLOv5

description: The dataset and code used in this study are crucial for advancing the accurate detection of positive microchambers in large-field ddPCR imaging. The provided dataset includes annotated ddPCR images in YOLO format, stored in the `ddpcr320/` folder. The codebase features the improved YOLOv5 model, integrating BiFPN, GhostConv, C3Ghost modules, SimAM attention mechanism, and network pruning, among other custom modifications. The `train.py` and `detect.py` scripts handle training and detection tasks, while `dataset.ipynb` demonstrates the dataset creation and splitting processes, as well as dataset processing and augmentation. The graphical user interface, developed using PyQt5 and implemented in `main_win.py`, facilitates image processing and result analysis for users. The project structure, `ddpcr_yolov5`, is systematically organized, with detailed instructions provided in the README.md file.
DOI: 10.6084/m9.figshare.7640384.v1
title: Prospective cohort of AIDS patients screened for cryptococcal antigenaemia, pre-emptively treated and followed in Brazil

description: This study aimed to estimate the prevalence of cryptococcal antigenemia and predictors of CrAg positivity in PLHAs with CD4 &lt;200 cells/μL in the midwest region of Brazil (state of Goiás) and outcomes.<br>
DOI: 10.21233/w6q1-3c41
title: East Ujimqin Banner ostracode surface sample dataset

description: Raw data for the East Ujimqin Banner ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.17632/vw933638jx
title: RAW DATA MEASUREMENT OF LENGTH AND WEIGHT OF NAPOLEON FISH (Cheilinus undulatus) IN BANGGAI ISLANDS AND BANGGAI SEA DISTRICT, CENTRAL SULAWESI PROVINCE INDONESIA

description: Length-weight measurements of C. undulatus for 3 months carried out in five research locations obtained as many as 163 specimens with a total length of 150-590 mm (average 323.71; ±61.93 mm) and a total weight of 100-3500g (average 612; ±443.53 g). This data shows that the specimens caught for live marketing are immature juvenile fish. The frequency distribution of the highest class of hose size was at 249.5-299.5 (47 specimens), 299.5-349.5 (44 specimens), and 349.5-399.5 mm (38 specimens), the highest total frequency was 129 specimens followed by 399.5-449.5 (17 specimens) and 199.5-249.5 (11 specimens). Meanwhile, the lowest frequencies were at 149.5-199.5 (2 specimens), 499.5-549.5 (2 specimens), and at 499.5-549.5 and 549.5-599.5 only 1 specimen each.
DOI: 10.6084/m9.figshare.14375606.v1
title: table information

description: RNAseq data, mitochondrial proteomics, mass spectrometry proteins information.
DOI: 10.6084/m9.figshare.27928797.v1
title: 补充材料：中风患者自杀相关行为性别差异的检索策略、漏斗图、敏感性分析图表、亚组分析和回归分析

description: 调查中风患者自杀意念、自杀未遂和自杀死亡的性别差异。
DOI: 10.17632/99wtt852jz
title: HRV as an Index of Impulse Control in Dogs: Experiment 2

description: In this experiment, dogs were either cued to lie-down in front of a brick for 10 minutes (Interesting condition) or to lie-down in front of a brick (Uninteresting condition) while their cardiac activity was measured. Each test session consisted of three phases. First, the dog was placed in the car cage and a 20 min baseline measurement was collected. After this baseline measurement, the dogs were taken out of the car and led to a place in which they had to lie down in front of either a toy (i.e., Interesting condition) or a brick (Uninteresting condition) for 10 minutes. After the experimental phase, another measurement was taken in the car cage in order to measure cardiac activity during recovery. De dataset shows the data for every individual in every phase and condition. IBI’s were exported as text files with the Polar® software Polar Protrainer 5, and artifacts in the data were visually detected and deleted with the ARTiiFACT software (Version 2.09; Kaufmann, Sütterlin, Schulz, & Vögele, 2011). In accordance with the literature, five minutes of each phase were used to calculate HRV. Of the baseline phase, the last five minutes were analyzed. This allowed us to eliminate the stress-effects of beginning the experiment and of putting the polar strap around the chest of the dog. Of these five minutes, the last 30 seconds were removed to account for approaching the car and opening the trunk during that timeframe. Of the manipulation and recovery phase, the middle five minutes were analyzed in order to eliminate noise in the data caused by the handler’s presence when leaving or approaching the dog at the beginning and end.
DOI: 10.17632/k59xy7xxm9
title: Data for: Variations in the East Asian winter monsoon from 3500-1300 cal. yr BP in northern China and their possible societal impacts

description: This data set was recovered from the short sediment core Z8 from the South Yellow Sea mud deposit (off Shandong Peninsula) and covered an age of 3.5-1.3 ka BP. The data set includes time serials of grain size parameters, organic carbon isotope and long-chain alkenones based SST.
DOI: 10.6084/m9.figshare.28328528.v1
title: Genome assembly data for HapB

description: Genome assembly data for HapB
DOI: 10.17632/35wh56287y
title: IoT-based Dataset of a Tomato Cultivation Under Different Irrigation Regimes

description: This experimental dataset contains IoT-based data collected through Long Range Wide Area Network (LoRaWAN) commercial devices in a tomato (Solanum lycopersicum L. cv. HEINZ 1301) cultivation located at the “Azienda Sperimentale Stuard” in Parma, Italy (lat: 44.80787, lon: 10.27467), and data generated by the Agriware platform. 

More in detail, the IoT-based irrigation system located in the “Azienda Sperimentale Stuard” to manage the watering of the tomato crop has been organized with 3 experimental lines associated with 3 different watering regimes: (i) Line #1 was irrigated with a water quantity equal to the recommendation of the Italian “Irriframe” platform (https://www.irriframe.it/); (ii) Line #2 was irrigated with a water quantity equal to the 60% of Line #1; (iii) Line #3 was irrigated with a water quantity equal to the 30% of Line #1. 

The dataset is composed of 4 CSV files. Three of these files contain the following information, generated by IoT devices (environmental sensor, water meters, and soil sensors) and sampled every 10 minutes: timestamp; device identifier; air moisture and temperature; carbon dioxide (CO2) level; barometric pressure; battery percentage; tomato line identifier; water volume; soil electrical conductivity, moisture, and temperature. The remaining CSV file contains daily values of agronomic indicators, calculated through the Agriware platform mainly using the average daily air temperature values, such as: the daily values of Growing Degree Days (GDD) and Heat Units (namely: standard day degree, daily mean temperature, daily maximum temperature above T_base, daily maximum temperature, daily maximum temperature above T_base with reduction of T_cutoff, Ontario units.) 

 

A complete description of the CSV file can be found in the README.txt file. 

The dataset has been generated in the context of the following two projects: (i) Agritech - “National Research Centre for Agricultural Technologies,” project code CN00000022, funded under the National Recovery and Resilience Plan (NRRP), Mission 4 Component 2 Investment 1.4 - Call for tender no. 3138 of 16/12/2021 of Italian Ministry of University and Research funded by the European Union – NextGenerationEU, Concession Decree no. 1032 of 17/06/2022 adopted by the Italian Ministry of University and Research; and (ii) SMALLDERS - “Smart Models for Agrifood Local vaLue chain based on Digital technologies for Enabling covid-19 Resilience and Sustainability,” co-funded by the PRIMA Program - Section 2 Call multi-topics 2021, through the following National Authorities: Ministry of Universities and Research (MUR, Italy), State Research Agency (AEI, Spain), Agence Nationale de la Recherche (ANR, France), Ministry of Higher Education and Scientific Research (Tunisia). The dataset reflects only the authors’ views; the European Commission is not responsible for any use that may be made of the information it contains.
DOI: 10.17632/frjj7djfpv
title: Bioimpedance signals recorded from the lower limbs of a patient with early-stage varicose veins before and after massage

description: Subject 
Subject is female, 27 years old, nonsmoker, BMI= 23.1 (kg/m2), there is a genetic susceptibility in the family to the occurrence of varicose veins.
The measurements were made after confirming the varicose in the right leg in the early stages, and the second measurement was made after a five-minute local massage of the leg.
Equipment
The equipment used  is the multi-channel electrical impedance research system REO-32. This system has the following characteristics: 30 precordial electrical impedance channels, one transthoracic bioimpedance channel, one ECG channel, channel sampling rate is 500 HZ, bioimpedance measurement method is tetropolar, probe current amplitude is 1 mA, probing frequency is 100 kHz, pulse impedance measurement range is (−2∼+2) Ohm , and bandwidth of the bioimpedance channel is (0.01∼117) Hz.
Channels:
Transthoracic ;
Right thigh (RLU);
Right leg (RL);
Lower part of the right leg (RLD);
Left thigh (LLU);
Left leg (LL);
Lower part of the left leg (LLD);
ECG.
Institutional Review Board Statement: The study that collected the data was conducted according to the guidelines of the Declaration of Helsinki, and approved by the Ethics Committee of Scientific and educational medical-technological center of Bauman Moscow State Technical University (Institutional Review Board Statement No 1 on 28 January 2021).
Informed Consent Statement: Informed consent was obtained form subject involved in the study.
DOI: 10.17632/hjry879v8j
title: Decision matrix including performance values of alternatives for evaluation European countries regarding sustainable realization of aims of SDG 11

description: This data includes values achieved by evaluated alternatives in relation to the realization of aims of the SDG 11 (Sustainable Development Goal 11 - Sustainable cities and communities) framework collected for 2015-2022. The aims of SDG 11 are represented by 9 criteria for which data was collected in 8 two-dimensional decision matrices built for each year. SDG 11 prompts for development towards sustainable cities and communities. The data is available in 8 individual XLSX and CSV files for particular years. A detailed description of the data is provided in a PDF named data.pdf
DOI: 10.17632/nmjxmzykwb
title: Prevalence and risk factors of hypertension in China

description: Prevalence and risk factors of hypertension in China
DOI: 10.17632/zgtrcygjwc
title: Mental Illness, stigma and job insertion on a Spanish sample

description: Measures of a Spanish sample of working and non-working adults with mental illness. Including variables such as perceived personal and group discrimination, internalized stigma, disagnosis concealment, and self-esteem.
DOI: 10.17632/rtcw22tzf2
title: Alhashin et al 2025 Passive Regreening Data NEOM KSA

description: Plant species and number in different treatment plots after one year in a hyper-arid desert restoration project in northwest Kingdom of Saudi Arabia. Treatments are protected and unprotected lowland plains, protected and unprotected rocky alluvial hills, and protected and planted/irrigated lowland plains.
DOI: 10.6084/m9.figshare.6945704.v3
title: Appendix 1 from Chase et al. Embracing scale-dependence to achieve a deeper understanding of biodiversity and its change across communities. Contains raw data and references for rarefaction curves and analyses presented in Figures 2 and 3.

description: These data are a subset of those presented in:McGill, BJ. 2011. Species abundance distributions. In. A. Magurran and B. McGill (eds) Biological diversity: frontiers in measurement and assessment. Oxford University Press, Oxford (2011) 105-122.