cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/5s6gha
title: Lymania involucrata (Bromeliaceae: Bromelioideae), a new ornamental species from Bahia, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Souza, Everton Hilo De, Aona, Lidyanne Y. S., Souza, Fernanda V. D., Leme, Elton M. C. (2021): Lymania involucrata (Bromeliaceae: Bromelioideae), a new ornamental species from Bahia, Brazil. Phytotaxa 489 (2): 209-215, DOI: 10.11646/phytotaxa.489.2.9, URL: http://dx.doi.org/10.11646/phytotaxa.489.2.9
DOI: 10.15468/9vdq6a
title: A new species of Erythroxylum (Erythroxylaceae) from Colombia and Panama

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jara-Muñoz, Orlando Adolfo, Ávila, Fabio Andrés (2021): A new species of Erythroxylum (Erythroxylaceae) from Colombia and Panama. Phytotaxa 489 (3): 293-298, DOI: 10.11646/phytotaxa.489.3.6, URL: http://dx.doi.org/10.11646/phytotaxa.489.3.6
DOI: 10.15468/nbaddb
title: Stysiofulvius, a new genus of Cylapinae (Hemiptera: Heteroptera: Miridae) from the Peninsular Malaysia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gorczyca, Jacek, Chérot, Frédéric (2008): Stysiofulvius, a new genus of Cylapinae (Hemiptera: Heteroptera: Miridae) from the Peninsular Malaysia. Acta Entomologica Musei Nationalis Pragae 48 (2): 377-384, DOI: http://doi.org/10.5281/zenodo.5341326
DOI: 10.15468/9kxupj
title: Vanilla ribeiroi Hoehne (Orchidaceae: Vanilloideae): notes on taxonomy and geographical distribution

description: This dataset contains the digitized treatments in Plazi based on the original journal article Engels, Mathias Erich, Koch, Ana Kelly (2021): Vanilla ribeiroi Hoehne (Orchidaceae: Vanilloideae): notes on taxonomy and geographical distribution. Phytotaxa 490 (1): 99-106, DOI: 10.11646/phytotaxa.490.1.9, URL: http://dx.doi.org/10.11646/phytotaxa.490.1.9
DOI: 10.15468/fvm9ft
title: Reinstatement of Lonicera tricalysioides (Caprifoliaceae) as a distinctive species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zeng, You-Pai, Luo, Yu-Feng, Yang, Qin-Er (2021): Reinstatement of Lonicera tricalysioides (Caprifoliaceae) as a distinctive species from China. Phytotaxa 490 (2): 183-190, DOI: 10.11646/phytotaxa.490.2.4, URL: http://dx.doi.org/10.11646/phytotaxa.490.2.4
DOI: 10.15468/ays968
title: Correction of the name Hymenaea osanigraseminae (Detarioideae, Leguminosae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Aguilar-Sandí, Diego (2021): Correction of the name Hymenaea osanigraseminae (Detarioideae, Leguminosae). Phytotaxa 491 (1): 92, DOI: 10.11646/phytotaxa.491.1.11, URL: http://dx.doi.org/10.11646/phytotaxa.491.1.11
DOI: 10.5281/zenodo.5059979
title: MP2RAGE + CS datasets

description: This a a test raw datasets acquired on a knee which can be used to validate the compressed sensing reconstruction pipeline available here : https://github.com/CRMSB/PAPER_MP2RAGE_CS The sequence used is a homemade MP2RAGE+CS with a variable density poisson distribution along the ky-kz direction developped at the CRMSB, UMR 5536, CNRS/Université de Bordeaux, Acquisition was performed on a knee with : - a 1mm isotropic resolution - Body coil - Matrix 256x256x208
DOI: 10.5281/zenodo.5059978
title: MP2RAGE + CS datasets

description: This a a test raw datasets acquired on a knee which can be used to validate the compressed sensing reconstruction pipeline available here : https://github.com/CRMSB/PAPER_MP2RAGE_CS The sequence used is a homemade MP2RAGE+CS with a variable density poisson distribution along the ky-kz direction developped at the CRMSB, UMR 5536, CNRS/Université de Bordeaux, Acquisition was performed on a knee with : - a 1mm isotropic resolution - Body coil - Matrix 256x256x208
DOI: 10.5517/ccdc.csd.cc255qfj
title: CCDC 2001497: Experimental Crystal Structure Determination

description: Related Article: Michael Bolte|2020|CSD Communication|||
DOI: 10.15468/7tb6qc
title: Chrysosplenium fallax (Saxifragaceae), a new species from the Russian Far East

description: This dataset contains the digitized treatments in Plazi based on the original journal article Koldaeva, Marina N. (2021): Chrysosplenium fallax (Saxifragaceae), a new species from the Russian Far East. Phytotaxa 491 (1): 35-46, DOI: 10.11646/phytotaxa.491.1.4, URL: http://dx.doi.org/10.11646/phytotaxa.491.1.4
DOI: 10.6084/m9.figshare.16545708
title: Gene Expression DEconvolution Pipeline in R

description: <i><b>gedepir</b></i> is an R package that simplifies the use of deconvolution tools within a complete transcriptomics analysis pipeline. It simplify the definition of a end-to-end analysis pipeline with a set of base functions that are connected through the pipe syntax used in <i><b>magrittr</b></i>, <i><b>tidyr</b></i> or <i><b>dplyr</b></i> packages.This dataset example is comprised of 50 pseudo-bulk samples.<br>
DOI: 10.6084/m9.figshare.16545708.v1
title: Gene Expression DEconvolution Pipeline in R

description: <i><b>gedepir</b></i> is an R package that simplifies the use of deconvolution tools within a complete transcriptomics analysis pipeline. It simplify the definition of a end-to-end analysis pipeline with a set of base functions that are connected through the pipe syntax used in <i><b>magrittr</b></i>, <i><b>tidyr</b></i> or <i><b>dplyr</b></i> packages.This dataset example is comprised of 50 pseudo-bulk samples.<br>
DOI: 10.15468/gfemsd
title: Phlomoides liangwangshanensis (Lamiaceae), a new species from Yunnan, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zhao, Yue, Chen, Ya-Ping, Zheng, Hai-Lei, Peng, Hua, Xiang, Chun-Lei (2021): Phlomoides liangwangshanensis (Lamiaceae), a new species from Yunnan, China. Phytotaxa 491 (1): 72-78, DOI: 10.11646/phytotaxa.491.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.491.1.8
DOI: 10.15468/2hhwdy
title: True branching and phenotypic plasticity in the planktonic cyanobacterium Dolichospermum brachiatum sp. nov. (Nostocales, Aphanizomenonaceae), from south-eastern Australia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Mcgregor, Glenn B., Sendall, Barbara C. (2021): True branching and phenotypic plasticity in the planktonic cyanobacterium Dolichospermum brachiatum sp. nov. (Nostocales, Aphanizomenonaceae), from south-eastern Australia. Phytotaxa 491 (2): 93-114, DOI: 10.11646/phytotaxa.491.2.1, URL: http://dx.doi.org/10.11646/phytotaxa.491.2.1
DOI: 10.5281/zenodo.5339649
title: Unprocessed data for the "Property-Based Testing of Web APIs" paper

description: Unprocessed data for the "Property-Based Testing of Web APIs" paper.
DOI: 10.5281/zenodo.5123507
title: Unprocessed data for the "Property-Based Testing of Web APIs" paper

description: Unprocessed data for the "Property-Based Testing of Web APIs" paper.
DOI: 10.15468/drzh83
title: New data on the Tingidae from Gabon (Hemiptera: Heteroptera)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Guilbert, Eric, Cnrs, Cp, Département de Systématique et Evolution - (2008): New data on the Tingidae from Gabon (Hemiptera: Heteroptera). Acta Entomologica Musei Nationalis Pragae 48 (2): 491-495, DOI: http://doi.org/10.5281/zenodo.5341564
DOI: 10.15468/9wha47
title: Rajburicoris, a new genus of Cardiastethini, and discussion of the systematic position of Dufouriellus (Hemiptera: Heteroptera: Anthocoridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Carpintero, Diego Leonardo, Dellapé, Pablo Matias (2008): Rajburicoris, a new genus of Cardiastethini, and discussion of the systematic position of Dufouriellus (Hemiptera: Heteroptera: Anthocoridae). Acta Entomologica Musei Nationalis Pragae 48 (2): 503-509, DOI: http://doi.org/10.5281/zenodo.5341620
DOI: 10.5281/zenodo.5341153
title: Hurst index in drawings

description: Data used for the article "To draw or not to draw: understanding the temporal organization of drawing behaviour using fractal analyses"
DOI: 10.5281/zenodo.5278052
title: Hurst index in drawings

description: Data used for the article "To draw or not to draw: understanding the temporal organization of drawing behaviour using fractal analyses"
DOI: 10.15468/yxqgk6
title: A taxonomic note of Pterocephalus (Caprifoliaceae) from N Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ranjbar, Massoud, Ranjbar, Zahra (2021): A taxonomic note of Pterocephalus (Caprifoliaceae) from N Iran. Phytotaxa 494 (1): 137-144, DOI: 10.11646/phytotaxa.494.1.10, URL: http://dx.doi.org/10.11646/phytotaxa.494.1.10
DOI: 10.15468/8kpfmq
title: Agrostis barikii (Poaceae: Agrostidinae), a new grass species from Western Himalaya, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Prasad, Dileshwar, Yadav, Rekha, Jaiswal, Shubham, Tripathi, Shailja, Agnihotri, Priyanka (2021): Agrostis barikii (Poaceae: Agrostidinae), a new grass species from Western Himalaya, India. Phytotaxa 494 (1): 145-150, DOI: 10.11646/phytotaxa.494.1.11, URL: http://dx.doi.org/10.11646/phytotaxa.494.1.11
DOI: 10.15468/2r4sa9
title: New subtribes and a new genus of Podopini (Heteroptera: Pentatomidae: Podopinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Gapon, Dmitry A., TentatDAG (2008): New subtribes and a new genus of Podopini (Heteroptera: Pentatomidae: Podopinae). Acta Entomologica Musei Nationalis Pragae 48 (2): 523-532, DOI: http://doi.org/10.5281/zenodo.5341658
DOI: 10.6084/m9.figshare.14716974
title: Exploring the advantages of the maximum entropy model in calibrating cellular automata for urban growth simulation: a comparative study of four methods

description: This is the dataset for the research paper titled "Exploring the advantages of the maximum entropy model in calibrating cellular automata for urban growth simulation: a comparative study of four methods".
DOI: 10.14457/cu.the.1980.8
title: แนวความคิดและบทบาททางการเมืองของสมเด็จเจ้าพระยาบรมมหาศรีสุริยวงศ์ (ช่วง บุนนาค) ตั้งแต่สมัยรัชกาลที่ 2 ถึงสมัยราชการที่ 5
DOI: 10.14457/cu.the.1979.4
title: บทบาทของเศรษฐีที่ปรากฏในพระไตรปิฎก
DOI: 10.14457/cu.the.1980.9
title: การวิเคราะห์ฐานะการเงินของอุตสาหกรรมนมข้นหวานในประเทศไทย
DOI: 10.14457/cu.the.1980.10
title: ปริมาณสะสมของดีดีที พีซีบี และโลหะหนักบางชนิดในหอยตะโกรม และหอยนางรมในอ่าวไทย
DOI: 10.14457/cu.the.1980.11
title: เครื่องวัดปริมาณนิวตรอนประจำบุคคลด้วยโซลิดสเตทแทรดดีเทคเตอร์
DOI: 10.15468/23km45
title: Taxonomic changes and new species in Malagasy Euphorbia (Euphorbiaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Haevermans, Thomas, Hetterscheid, Wilbert L. A. (2021): Taxonomic changes and new species in Malagasy Euphorbia (Euphorbiaceae). Phytotaxa 492 (1): 1-61, DOI: 10.11646/phytotaxa.492.1.1, URL: http://dx.doi.org/10.11646/phytotaxa.492.1.1
DOI: 10.6084/m9.figshare.15149010
title: Metadata record for: A high-spatial-resolution dataset of human thermal stress indices over South and East Asia

description: This dataset contains key characteristics about the data described in the Data Descriptor A high-spatial-resolution dataset of human thermal stress indices over South and East Asia. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.14806308
title: A superior contiguous whole genome assembly for shrimp (Penaeus indicus)

description: The dataset contains files pertaining to the assembly and annotation of Indian White Shrimp, <i>Penaeus indicus</i> genome, repeat annotation, gene family analyses, phylogenetic analyses and SNP identification in genes. The assembly was generated with Pacbio subreads (WTDBG2.5), polished for indels with Illumina paired-end reads (POLCA) and scaffolded with HiC chromatin interaction data (3D-DNA). Annotation of repeat elements was performed with RMBlast search of RepeatMasker module implemented in OmicsBox v1.3.11. The gene family analyses were performed using OrthoMCL v2.0.9. The SNP calling was performed from vcf file generated with pooled-RNAseq reads. The dataset contains the following files; assembly scaffolds, genes sequences and their coordinates in genome, protein sequences, gene annotations, sequence alignment based on single-copy orthologous genes and SNP positions in genes.
DOI: 10.6084/m9.figshare.14806308.v2
title: A superior contiguous whole genome assembly for shrimp (Penaeus indicus)

description: The dataset contains files pertaining to the assembly and annotation of Indian White Shrimp, <i>Penaeus indicus</i> genome, repeat annotation, gene family analyses, phylogenetic analyses and SNP identification in genes. The assembly was generated with Pacbio subreads (WTDBG2.5), polished for indels with Illumina paired-end reads (POLCA) and scaffolded with HiC chromatin interaction data (3D-DNA). Annotation of repeat elements was performed with RMBlast search of RepeatMasker module implemented in OmicsBox v1.3.11. The gene family analyses were performed using OrthoMCL v2.0.9. The SNP calling was performed from vcf file generated with pooled-RNAseq reads. The dataset contains the following files; assembly scaffolds, genes sequences and their coordinates in genome, protein sequences, gene annotations, sequence alignment based on single-copy orthologous genes and SNP positions in genes.
DOI: 10.6084/m9.figshare.14806308.v1
title: A superior contiguous whole genome assembly for shrimp (Penaeus indicus)

description: The dataset contains files pertaining to the assembly and annotation of Indian White Shrimp, <i>Penaeus indicus</i> genome, repeat annotation, gene family analyses, phylogenetic analyses and SNP identification in genes. The assembly was generated with Pacbio subreads (WTDBG2.5), polished for indels with Illumina paired-end reads (POLCA) and scaffolded with HiC chromatin interaction data (3D-DNA). Annotation of repeat elements was performed with RMBlast search of RepeatMasker module implemented in OmicsBox v1.3.11. The gene family analyses were performed using OrthoMCL v2.0.9. The SNP calling was performed from vcf file generated with pooled-RNAseq reads. The dataset contains the following files; assembly scaffolds, genes sequences and their coordinates in genome, protein sequences, gene annotations, sequence alignment based on single-copy orthologous genes and SNP positions in genes.
DOI: 10.15468/s2w2c9
title: Cortinarius jiaoheensis (Cortinariaceae), a new species of Cortinarius subgenus Telamonia section Flexipedes, from northeast China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Luo, Ying, Bau, Tolgor (2021): Cortinarius jiaoheensis (Cortinariaceae), a new species of Cortinarius subgenus Telamonia section Flexipedes, from northeast China. Phytotaxa 494 (1): 113-121, DOI: 10.11646/phytotaxa.494.1.7, URL: http://dx.doi.org/10.11646/phytotaxa.494.1.7
DOI: 10.34808/ccxq-pz51
title: Hydrodynamic reanalysis of water temperature and salinity in the Baltic Sea using the PM3D model

description: The dataset contains the results of numerical modeling of water temperature and salinity in the Baltic Sea since 1998. A long-term reanalysis was performed using the three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997). A numerical dynamic-thermodynamic model of sea ice (Herman et al. 2011) was coupled to the analysis of ice conditions variability.
The model is based on the Princeton Ocean Model (POM) developed at Princeton University (Blumberg and Mellor, 1987). Like POM, the M3D/PM3D model uses the Mellor-Yamada turbulence scheme and sigma vertical coordinates. The simulation was carried out in a rectangular grid of 3' (latitude) and 6' (longitude) resolution. The spatial resolution was 3 nautical miles, i.e. about 5.5 km. An open boundary was located between the Skagerrak and the Kattegat along the parallel connecting Skagen and Göteborg, where the water exchange with the North Sea takes place. A radiation condition based on Somerfield’s concept for velocities  vertically averaged and normal to the boarder  plane was applied. Weather forcing since 1998 was carried out using the results of operational numerical forecasts conducted by ICM University of Warsaw using the Unified Model (UM) developed by Met Office. The PM3D model uses the assimilation of sea surface temperature from the satellite (SST) and measurements of salinity and water temperature from ships at standard depths as part of ICES monitoring. 
The spatial distribution of water temperature and salinity was recorded twice a day, at a depth of 0 m, 5 m, 10 m, 15 m, 20 m, 30 m,  40 m, 50 m and 60 m in the model's computational grid in unproiected form (LatLong, WGS 84, EPSG: 4326). The validation of the modeling results for the period 1958-2007 showed a root mean square error (RMSE) of the water temperature from 0.9 to 1.4 °C, and in the case of salinity RMSE was from 0.16 to 0.5 psu for various stations in the Baltic Sea (Jędrasik i Kowalewski, 2019).  Surface temperature and salinity on the first day of reanalysis
DOI: 10.15468/rf4tv3
title: Delairea aparadensis (Asteraceae, Senecioneae), the first native species of the genus in the Americas

description: This dataset contains the digitized treatments in Plazi based on the original journal article Funez, Luís A., Hassemer, Gustavo, Peroni, Nivaldo, Drechsler- Santos, Elisandro R. (2021): Delairea aparadensis (Asteraceae, Senecioneae), the first native species of the genus in the Americas. Phytotaxa 494 (1): 122-128, DOI: 10.11646/phytotaxa.494.1.8, URL: http://dx.doi.org/10.11646/phytotaxa.494.1.8
DOI: 10.34808/b443-2s40
title: Hydrodynamic reanalysis of ice conditions in the Baltic Sea using the PM3D model

description: The dataset contains the results of numerical modeling of sea ice in the Baltic Sea since 1998. A long-term reanalysis was performed using the three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997). A numerical dynamic-thermodynamic model of sea ice (Herman et al. 2011) was coupled to the analysis of ice conditions variability.
The model is based on the Princeton Ocean Model (POM) developed at Princeton University (Blumberg and Mellor, 1987). Like POM, the M3D/PM3D model uses the Mellor-Yamada turbulence scheme and sigma vertical coordinates. The simulation was carried out in a rectangular grid of 3' (latitude) and 6' (longitude) resolution. The spatial resolution was 3 nautical miles, i.e. about 5.5 km. An open boundary was located between the Skagerrak and the Kattegat along the parallel connecting Skagen and Göteborg, where the water exchange with the North Sea takes place. A radiation condition based on Somerfield’s concept for velocities  vertically averaged and normal to the boarder  plane was applied.
Weather forcing since 1998 was carried out using the results of operational numerical forecasts conducted by ICM University of Warsaw using the Unified Model (UM) developed by Met Office. The PM3D model uses the assimilation of sea surface temperature from the satellite (SST) and measurements of salinity and water temperature from ships at standard depths as part of ICES monitoring.
Daily spatial distributions of sea ice thickness and concentration were recorded in the model's computational grid in unprojected form (LatLong, WGS 84, EPSG: 4326). Ice thickness is expressed in meters and ice concentration (fraction) is expressed as the ratio of the ice covered area to the total area of the grid.  Comparison of modeled and observed (FMI) maximum ice extent in the Baltic Sea (a), (c) and ice thickness at FMI stations (b) Airisto and (d) Hailuoto
DOI: 10.34808/1hq4-df69
title: Hydrodynamic reanalysis of currents  in the Baltic Sea using the PM3D model

description: The dataset contains the results of numerical modeling of currents in the Baltic Sea since 1998. A long-term reanalysis was performed using a three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997).
The model is based on the Princeton Ocean Model (POM) developed at Princeton University (Blumberg and Mellor, 1987). Like POM, the M3D/PM3D model uses the Mellor-Yamada turbulence scheme and sigma vertical coordinates. The simulation was carried out in a rectangular grid of 3' (latitude) and 6' (longitude) resolution. The spatial resolution was 3 nautical miles, i.e. about 5.5 km. An open boundary was located between the Skagerrak and the Kattegat along the parallel connecting Skagen and Göteborg, where the water exchange with the North Sea takes place. A radiation condition based on Somerfield’s concept for velocities  vertically averaged and normal to the boarder  plane was applied. Weather forcing since 1998 was carried out using the results of operational numerical forecasts conducted by ICM University of Warsaw using the Unified Model (UM) developed by Met Office. The PM3D model uses the assimilation of sea surface temperature from the satellite (SST) and measurements of salinity and water temperature from ships at standard depths as part of ICES monitoring.
The eastward and northward components of surface currents and at a depth of 5 m, 10 m, 15 m, 20 m, 30 m,  40 m, 50 m and 60 m were recorded every three hours in the computational grid of the model in unproiected form: LatLong, WGS 84 (EPSG: 4326).  Surface and 20 m deep currents in the Baltic Sea on the first day of reanalysis
DOI: 10.34808/ev21-j630
title: Hydrodynamic reanalysis of sea level in the Baltic Sea using the PM3D model

description: The data set contains the results of numerical modelling of sea level fluctuations in the Baltic Sea in the Baltic Sea since 1998. A long-term reanalysis was performed using a three-dimensional hydrodynamic model PM3D (Kowalewski and Kowalewska-Kalkowska, 2017), a new version of the M3D model (Kowalewski, 1997).
The model is based on the Princeton Ocean Model (POM) developed at Princeton University (Blumberg and Mellor, 1987). Like POM, the M3D/PM3D model uses the Mellor-Yamada turbulence scheme and sigma vertical coordinates. The simulation was carried out in a rectangular grid of 3' (latitude) and 6' (longitude) resolution. The spatial resolution was 3 nautical miles, i.e. about 5.5 km. An open boundary was located between the Skagerrak and the Kattegat along the parallel connecting Skagen and Göteborg, where the water exchange with the North Sea takes place. A radiation condition based on Somerfield’s concept for velocities  vertically averaged and normal to the boarder  plane was applied. Weather forcing since 1998 was carried out using the results of operational numerical forecasts conducted by ICM University of Warsaw using the Unified Model (UM) developed by Met Office. The PM3D model uses the assimilation of sea surface temperature from the satellite (SST) and measurements of salinity and water temperature from ships at standard depths as part of ICES monitoring.
The sea level spatial distributions were recorded in the model's computational grid in unproiected form (LatLong, WGS 84, EPSG: 4326) with an hourly time interval. Sea level values are expressed in metres relative to the mean level of the Baltic Sea in the PM3D model. The validation of the sea level modeling results for the period 2010-2015 showed (Kowalewski and Kowalewska-Kalkowska, 2017) a root mean square error (RMSE) of 8 to 13 cm for various stations in the Baltic Sea.  Sea level changes in the Baltic Sea on the first day of reanalysis