cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.dr7sqvb3m
title: Data from: Restoring heathlands after afforestation on two islands in western Norway

description: The ongoing loss of red-listed coastal heathlands is a threat to
 biodiversity and cultural heritage legacies throughout the Atlantic
 coastal regions of Europe. It is possible to restore degraded and
 afforested heathlands, but restoration interventions are often
 labour-intensive and costly, and the outcome of specific restoration
 actions is not well documented. We assess the efficiency of restoring
 coastal heathlands through natural succession (i.e. “passive restoration”)
 after removal of Sitka spruce (Picea sitchensis (Bong.) Carr.)
 plantations. The study was replicated on two neighbouring islands in a
 nature reserve in Western Norway. Low-intensity free-range sheep grazing
 was implemented as part of the reserve management plan. Furthermore, we
 tested the effect of leaving the clear-felled woody material as chips on
 site, this being a cost-efficient strategy on islands. Succession was
 monitored 1, 2, 4/5 and 8 years after clear-felling, and revegetation of
 vascular plants and bryophytes was compared to target heathland
 vegetation. Surprisingly, we found different successional trajectories on
 the two islands. Species composition on one island approached target
 heathland vegetation during succession, but not on the other. Wood chips
 reduced species richness and slowed the restoration process, but these
 negative effects were only short-term (&lt; 8 years). Differences in
 seed bank composition and soil conditions due to land use may explain the
 deviating successional trajectories on the two islands. We also found that
 management actions beyond clear-felling and introducing sheep grazing are
 necessary due to the rapid seed regeneration of the Sitka spruce.
DOI: 10.3886/e244705
title: Data for Characterizing Changes in the 1-percent Annual Exceedance Probability Streamflows for Climate Change Scenarios in the Housatonic River Watershed, Massachusetts, Connecticut, and New York

description: The U.S. Geological Survey in cooperation with the Federal Emergency Management Agency has conducted a study to evaluate potential changes to1-percent annual exceedance probability (AEP) streamflows. The study was conducted using the Precipitation Runoff Modeling System (PRMS). Climate inputs to the model of temperature and precipitation were scaled to anticipated changes that could occur in 2030, 2050, and 2100 based on global climate models. The output from the models were used to characterize the 1-percent AEP streamflows for the years 2030, 2050, and 2100 and compare the results to baseline conditions, 1950-2015. The data include the model input and output and spatial data for model referencing. Scripts for processing PRMS output to obtain final results are also provided.
description: (Downloaded 2026-01-26)
DOI: 10.5061/dryad.pzgmsbcrv
title: First demographic insights reveal high extinction risk of an endemic raptor species: the Reunion harrier

description: Gathering demographic information on rare species is critical to
 understanding their population dynamics and implementing efficient
 conservation measures. Using integrated models, we jointly analyzed
 multiple data sets, including capture-recapture, GPS tracking, and nest
 monitoring data collected over the last 10 years, to provide the first
 demographic insights for one of the world’s rarest raptors, the endemic
 Reunion harrier Circus maillardi. We estimated key demographic rates
 including annual survival and breeding parameters (clutch size, hatching
 and fledging success), and used population projection models to assess
 population growth rate and quasi-extinction risk. In order to guide future
 conservation actions for the population, we evaluated the effects of
 different management scenarios that improve survival, fecundity, or both,
 on population growth and quasi-extinction risk. Comparison of the
 estimated annual survival (juvenile and subadult survival: 0.66; adult
 survival: 0.71) and breeding parameters (clutch size: 2.3; hatching
 success: 0.47; fledging success: 0.74) with those of other harrier species
 suggests that adult survival and breeding parameters of Reunion harriers
 are low. A small data set collected 40 years ago suggests that the
 probability of an egg producing a fledgling was higher and has declined to
 the current low level. The population models project that the Reunion
 harrier population is declining and faces a high risk of quasi-extinction
 in the next 40 years. Only management measures that simultaneously improve
 adult survival and fecundity could lead to a recovery of the population.
 These alarming results call for immediate conservation action aimed at
 rapidly improving the demographic rates.
DOI: 10.5061/dryad.ttdz08m3n
title: Data for: UK redwoods terrestrial laser scanner point clouds

description: Giant redwoods (Sequoiadendron giganteum) are some of the UK’s largest
 trees, despite only being introduced in the mid-19th century. Given recent
 interest in planting redwoods in the UK, partly due to their carbon
 sequestration potential and also their undoubted public appeal, an
 understanding of their viability is important. However, little or no
 research has been conducted to quantitatively estimate their carbon uptake
 in UK conditions. We used 3D terrestrial laser scanning (TLS) to make
 detailed structure measurements of individual S. giganteum  trees
 at three sites, to estimate aboveground biomass (AGB) and annual biomass
 accumulation rates. We show that UK-grown S. giganteum can sequester
 carbon at a rate of 80 - 100 kg C year-1, varying with climate, management
 and age. This accumulation rate is 2.5 and 20 times faster than
 commonly-grown UK plantation tree species. We develop new UK-specific
 allometric models for S. giganteumwhich fit observed AGB with r2 &gt;
 0.93 and bias &lt; 2% and can be used to estimate S. giganteum AGB
 more generally. S. giganteum appears to represent a small but potentially
 important addition to the UK’s carbon sequestration efforts and this work
 provides a baseline for estimating their longer term AGB and carbon
 sequestration capacity.
description: TLS data were collected at 3 different UK sites in April 2022 and
 April 2023. TLS data were collected with a <em>RIEGL</em>
 VZ-400i V-Line 3D TLS (<em>RIEGL</em> Laser Measurement
 Systems GmbH, 2017). The scanner has a range of ~700 m, beam divergence
 0.35 milliradians and emits light at 1550 nm. At each location an upright
 scan and a scan at 90° tilt were taken. The angular resolution of each
 scan was 0.04°. The scanner was mounted on a tripod at 1.5 m above the
 ground. At Havering and Benmore, due to the avenue layout, scans were
 conducted ~10 m apart (Wilkes et al. 2017) down the centre of the avenue,
 and then at either side of each line of trees, to try to ensure full
 coverage around all trees. At Havering this was difficult due to the
 proximity of fences at some points. At Wakehurst trees were sampled in a
 radial pattern, again at ~10 m apart, with locations being chosen to try
 to ensure full coverage around all trees. TLS scans
 from all positions were co-registered into point clouds for each plot
 using the Riegl RiSCAN PRO software (v 2.7.1). Individual tree point
 clouds were extracted manually from plot level point clouds using the
 segmentation tool in CloudCompare (v 2.12.0). Segmented point clouds of
 individual trees were extracted using the
 <em>TLSeparation</em> (Vicari et al., 2019) and
 <em>TLS2trees</em> (Wilkes et al. 2022) Python tools. The
 resulting point clouds are stored as basic ascii txt files, with columns
 comprising x, y, z in each case.
description: Point clouds are all ascii txt files, with columns comprising x,
 y, z in each case and can be opened using CloudCompare (v
 2.12.0).
DOI: 10.5061/dryad.nk98sf7xq
title: Passive acoustic monitoring indicates Barred Owls are established in northern coastal California and management intervention is warranted

description: Barred Owls (Strix varia) have recently expanded westward from eastern
 North America, contributing to substantial declines in Northern Spotted
 Owls (Strix occidentalis caurina). Passive acoustic monitoring (PAM)
 represents a potentially powerful approach for tracking range expansions
 like the Barred Owl’s, but further methods development is needed to ensure
 that PAM-informed occupancy models meaningfully reflect population
 processes. Focusing on the leading edge of the Barred Owl range expansion
 in coastal California, we used a combination of PAM data, GPS-tagging, and
 active surveys to (1) estimate breeding home range size, (2) identify
 patterns of vocal activity that reflect resident occupancy, and (3)
 estimate resident occupancy rates. Mean breeding season home range size
 (452 ha) was reasonably consistent with the size of cells (400 ha) sampled
 with autonomous recording units (ARUs). Nevertheless, false-positive
 acoustic detections of Barred Owls frequently occurred within cells not
 containing an activity center such that site occupancy estimates derived
 using all detected vocalizations (0.61) were unlikely to be representative
 of resident occupancy. However, the proportion of survey nights with
 confirmed vocalizations (VN) and the number of ARUs within a sampling cell
 with confirmed vocalizations (VU) were indicative of Barred Owl residency.
 Moreover, the false positive error rate could be reduced for occupancy
 analyses by establishing thresholds of VN and VU to define detections,
 although doing so increased false negative error rates in some cases.
 Using different thresholds of VN and VU, we estimated resident occupancy
 to be 0.29–0.44, which indicates that Barred Owls have become established
 in the region but also that timely lethal removals could still help
 prevent the extirpation of Northern Spotted Owls. Our findings provide a
 scalable framework for monitoring Barred Owl populations throughout their
 expanded range and, more broadly, a basis for converting site occupancy to
 resident occupancy in PAM programs.
DOI: 10.25349/d96326
title: Role of complexation strength on the photophysical and transport properties of semiconducting charged polymer complexes

description: The high polymer loading in complexes of conjugated and insulating
 polyelectrolytes offers unique opportunities for fabrication of conductive
 thick films and bulk structures. The electrostatic interactions in these
 systems provide a handle for controlling their structure and properties.
 The impact of the charge- mediated complexation strength on the
 photophysical and electronic transport properties in blends
 of conjugated polyelectrolytes (CPEs) with oppositely charged
 polymeric ionic liquids (PILs) is presented here. Varying the frequency of
 charged repeat units from 50% to 100% on an anionic polythiophene-based
 CPE and a complimentary cationic PIL results in a model system with
 controlled complexation strength. In highly charged complexes, the
 intimate mixing between the CPE and the PIL is found to reduce the
 structural disorder along the CPE backbone, enhancing its intrachain
 conjugation and interchain stacking. In weakly charged complexes
 (&lt;90%), these chain planarization effects are absent and microphase
 separation occurs. At all charge fractions examined, the electrical
 conductivity of a doped complex is higher than that of the unblended
 constituent CPE. The highest electrical conductivity near 1 S cm-1 is
 found for a charge fraction of 100%. These results demonstrate the
 potential for designing effective electrical conductors using
 electrostatic complexation.
description: Please refer to the Experimental Methods section in the
 Manuscript for details on sample preparation and data
 collection/processing.
description: All data can be opened with any application that can read .csv
 and .tiff files.
DOI: 10.5061/dryad.4j0zpc8hn
title: Primary data of: Spring phenology rather than climate dominates the trends in peak of growing season in the Northern Hemisphere

description: Shifts in plant phenology regulate ecosystem structure and function, which
 feeds back to the climate system. However, drivers for the peak of growing
 season (POS) in seasonal dynamics of terrestrial ecosystems remain
 unclear. Here, spatial-temporal patterns of POS dynamics were analyzed by
 solar-induced chlorophyll fluorescence (SIF) and vegetation index in the
 Northern Hemisphere over the past two decades from 2001 to 2020. Overall,
 a slow advanced POS was observed in the Northern Hemisphere, while a
 delayed POS was distributed mainly in northeastern North America. Trends
 of POS were driven by the start of growing season (SOS) rather
 than pre-POS climate, both at hemisphere and biome scale. The effect of
 SOS on the trends in POS was the strongest in shrublands while the weakest
 in evergreen broad-leaved forests. These findings highlight the crucial
 role of biological rhythms rather than climatic factors in exploring
 seasonal carbon dynamics and global carbon balance. 
description: Phenological metrics (i.e., start of growing season, peak of
 growing season) were derived from solar-induced chlorophyll fluorescence
 and normalized difference vegetation index by using three extraction
 methods.
description: The upload dataset includes a mat file (Matlab file format) that
 contains the primary data variables. Detailed descriptions of these
 variables can be found in README.
DOI: 10.5061/dryad.bg79cnpfv
title: Acer and Quercus root traits plasticity

description: Introduction: Plant nutrient acquisition strategies range along a spectrum
 from autonomous foraging to investment in cooperative foraging through
 mycorrhizal associations. However, in temperate ecosystems, many plant
 species encounter contrasted levels of symbiont availability in open
 fields versus closed forests. Little is known about how fungal partner
 availability may be associated with intraspecific variation in other root
 foraging traits in natural settings. Methods: Here, we addressed this
 issue by sampling saplings from two tree species: the arbuscular
 mycorrhizal (AM) Acer rubrum and the ectomycorrhizal (ECM) Quercus rubra
 from open fields (AM-dominated) and adjacent forest plots (ECM-dominated).
 For each species and environment, we measured morphological,
 architectural, and symbiotic root traits. Results: For the open field,
 Quercus had greater specific root length (SRL) while Acer had higher AM
 colonization and root diameter. In the closed forest, the opposite pattern
 was observed, namely Quercus had higher ECM colonization and Acer greater
 SRL. Discussion: Both species showed evidence of a shift toward autonomous
 root foraging in the habitat with low expected symbiont abundance (open
 field for Quercus and forest for Acer). Although the confounding effects
 of site abiotic properties could not be strictly controlled in this study,
 these results suggest that plants might adjust root foraging traits
 according to local habitat conditions. Synthesis: Our results shed new
 light on the intraspecific variation in plant position along the so-called
 “collaboration gradient”, and suggest that mycorrhizal symbiont
 availability, along with other factors such as competition and site
 properties, may contribute to this variation.
DOI: 10.5061/dryad.70rxwdc3p
title: Data from: Experimentally simulating the evolution-to-ecology connection: Divergent predator morphologies alter natural food webs

description: The idea that changing environmental conditions drive adaptive evolution
 is a pillar of evolutionary ecology. But, the opposite—that adaptive
 evolution alters ecological processes—has received far less attention yet
 is critical for eco-evolutionary dynamics. We assessed the ecological
 impact of divergent values in a key adaptive trait using 16 populations of
 the brown anole lizard (Anolis sagrei). Mirroring natural variation, we
 established islands with short- or long-limbed lizards at both low and
 high densities. We then monitored changes in lower trophic levels, finding
 that on islands with short-limbed lizards at high-density, web
 spiders decreased and plants grew more via an indirect positive
 effect, likely through an herbivore-mediated trophic cascade. Our
 experiment provides strong support for evolution-to-ecology connections in
 nature, likely closing an otherwise well-characterized eco-evolutionary
 feedback loop.
description: Lizard morphology data are individual lizard values. Web spider
 and salticid spider data are island-level means. Buttonwood data are
 plant-level means.
DOI: 10.5281/zenodo.18403266
title: Source data of "Observation of Resonance of Kagome Flat Band Doublet"

description: This dataset is the source data of the paper "Observation of Resonance of Kagome Flat Band Doublet"
DOI: 10.25345/c52805c3b
title: MassIVE MSV000100615 - Supporting MS data for paper (doi: T.B.D.) by Zenge & Pham, et al. (2026), titled "Metabolism in Context: How Physiological Media Rewire Cancer Cell Proteomes and Signaling Networks".
title: Supporting MS data for paper (doi: T.B.D.) by Zenge & Pham, et al. (2026), titled "Metabolism in Context: How Physiological Media Rewire Cancer Cell Proteomes and Signaling Networks". Index of MS files and labels Supplementary Table - Proteome (Set 1 AO3680-3703; Set 2 3704-3727; Set 3 AO3728-3751 | Unimod:35; 2016; 4 | 126 (DU145_DMEM), 127n (HCT116_DMEM), 127c (HEK293T_DMEM, 128n (HeLa_DMEM), 128c (MCF7_DMEM), 129n (PANC1_DMEM), 129c (PC3_DMEM), 130n (RPE1_DMEM), 130c (U2OS_DMEM), 131n (DU145_HPLM), 131c (HCT116_HPLM), 132n (HEK293T_HPLM), 132c (HeLa_HPLM), 133n (MCF7_HPLM), 133c (PANC1_HPLM), 134n (PC3_HPLM), 134c (RPE1_HPLM), 135n (U2OS_HPLM) | Phospho proteome (Set 1 AO3662-3667; Set 2 3668-3673; Set 3 AO3674-3679 | Unimod:35; 2016; 4; 21 | 126 (DU145_DMEM), 127n (HCT116_DMEM), 127c (HEK293T_DMEM, 128n (HeLa_DMEM), 128c (MCF7_DMEM), 129n (PANC1_DMEM), 129c (PC3_DMEM), 130n (RPE1_DMEM), 130c (U2OS_DMEM), 131n (DU145_HPLM), 131c (HCT116_HPLM), 132n (HEK293T_HPLM), 132c (HeLa_HPLM), 133n (MCF7_HPLM), 133c (PANC1_HPLM), 134n (PC3_HPLM), 134c (RPE1_HPLM), 135n (U2OS_HPLM))
DOI: 10.5061/dryad.sqv9s4n81
title: Parkin regulates amino acid homeostasis at mitochondria-lysosome (M/L) contact sites in Parkinson’s disease

description: Mutations in the E3 ubiquitin ligase parkin are the most common cause of
 early-onset Parkinson’s disease (PD). Although parkin modulates
 mitochondrial and endolysosomal homeostasis during cellular stress,
 whether parkin regulates mitochondrial and lysosomal crosstalk under
 physiologic conditions remains unresolved. Using transcriptomics,
 metabolomics, and super-resolution microscopy, we identify amino acid
 metabolism as a disrupted pathway in iPSC-derived dopaminergic neurons
 from parkin PD patients. Compared to isogenic controls, parkin mutant
 neurons exhibit decreased mitochondria-lysosome contacts via
 destabilization of active Rab7. Subcellular metabolomics in parkin mutant
 neurons reveals amino acid accumulation in lysosomes and their deficiency
 in mitochondria. Knockdown of the Rab7 GTPase-activating protein TBC1D15
 restores mitochondria-lysosome tethering and ameliorates cellular and
 subcellular amino acid profiles in parkin mutant neurons. Our data thus
 uncover a function of parkin in promoting mitochondrial and lysosomal
 amino acid homeostasis through stabilization of mitochondria-lysosome
 contacts and suggest that modulation of inter-organelle contacts may serve
 as a potential target for ameliorating amino acid dyshomeostasis in
 disease.
DOI: 10.5061/dryad.8w9ghx3s1
title: Comment on: Picoscale structural insight into superconductivity of monolayer FeSe/SrTiO3

description: In a recent paper "Picoscale structural insight into
 superconductivity of monolayer FeSe/SrTiO3, Peng et al propose a structure
 for the Rt13 reconstruction of the SrTiO3 surface. In an comment (eLetter)
 by L. D. Marks, it is pointed out that this structure both ignores
 established chemistry, and the existing literature. This deposit has the
 structure files for the original paper in an xyz format (as provided by
 Peng et al), and rearranged into a standard CIF format.
description: Original version provided by Peng et al; processed using Wien2k
 into a standard CIF file, then edited to include bond-valence
 sums.
description: Standard text files.
DOI: 10.26165/juelich-data/iuf96l
title: FZJ 1056 cm² PEM electrolysis stack

description: The data set under consideration provides the technical drawings of a PEM electrolysis stack with an active cell area of 1056 cm². The stack was developed at the Institute of Energy Technologies (IET-4) at Forschungszentrum Jülich. The primary function of this stack is to facilitate the precise and meticulous testing of diverse components utilized in the PEM electrolysis process, employing a technical scale for accurate measurement.
DOI: 10.5061/dryad.dv41ns23r
title: The effects of urbanisation on pollinators and pollination: A meta-analysis

description: Urbanisation is increasing worldwide, with major impacts on biodiversity,
 species interactions and ecosystem functioning. Pollination is an
 ecosystem function vital for terrestrial ecosystems and food security;
 however, the processes underlying the patterns of pollinator
 diversity and the ecosystem services they provide in cities have seldom
 been quantified. Here, we perform a comprehensive meta-analysis of 133
 studies examining urbanisation effects on pollinator diversity and
 pollination. Our results confirm the widespread negative impacts of
 urbanisation on pollinator richness and abundance, with Lepidoptera being
 the most affected group. Furthermore, pollinator responses were found to
 be trait-specific, with below-ground nesting and solitary Hymenoptera and
 spring flyers more severely affected by urbanisation. Meanwhile, cities
 promote non-native pollinators, which may exacerbate conservation risks to
 native species. Surprisingly, despite the negative effects of urbanisation
 on pollinator diversity, pollination service measured as seed set is
 enhanced in non-tropical cities likely due to abundant generalists and
 managed pollinators therein. We emphasize that the richness of local
 flowering plants could mitigate the negative impacts of urbanisation on
 pollinator diversity. Overall, the results demonstrate the varying
 magnitudes of multiple moderators on urban pollinators and pollination
 service provision and could help guide conservation actions for
 biodiversity and ecosystem function for a sustainable future.
description: Excel, Word, R studio