cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.8huznk
title: Occurrence Download

description: A dataset containing 366896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chenopodium album L."
 ]
}

 The dataset includes 366896 records from 1863 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0068704-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bya7wv
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Delphinium cashmerianum Royle"
 ]
}

 The dataset includes 31 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007397-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jm65d8
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anthodiscus chocoensis Prance"
 ]
}

 The dataset includes 89 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197492-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6f63s6
title: Occurrence Download

description: A dataset containing 2479 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus sabiniana Douglas ex D.Don"
 ]
}

 The dataset includes 2479 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001480-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6dghqq
title: Occurrence Download

description: A dataset containing 531638 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Kenya"
 ]
}

 The dataset includes 531638 records from 594 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007397-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fsrcu9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2006-2006",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Catharus minimus (Lafresnaye, 1848)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008172-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2h4gcv
title: Occurrence Download

description: A dataset containing 81 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Papua New Guinea",
 "Geometry POLYGON((127.44463 -13.53545,127.44463 1.53545,157.55537 1.53545,157.55537 -13.53545,127.44463 -13.53545))",
 "HasCoordinate is true",
 "TaxonKey is Varanus prasinus (Schlegel, 1839)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007397-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ku5vhc
title: Occurrence Download

description: A dataset containing 717 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea pileata Roxb."
 ]
}

 The dataset includes 717 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001493-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fqp6qe
title: Occurrence Download

description: A dataset containing 4707 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casuarina equisetifolia L."
 ]
}

 The dataset includes 4707 records from 253 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117307-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj9258
title: Occurrence Download

description: A dataset containing 52940 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Capra hircus Linnaeus, 1758"
 ]
}

 The dataset includes 52940 records from 209 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0367354-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygfsys
title: Occurrence Download

description: A dataset containing 506 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Grimmia unicolor Hook.",
 "Year 1970-2023"
 ]
}

 The dataset includes 506 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025821-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zeivkh
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "Year 2014-2014",
 "DatasetKey is EOD – eBird Observation Dataset",
 "TaxonKey is Catharus minimus (Lafresnaye, 1848)"
 ]
}

 The dataset includes 66 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008174-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uswrtj
title: Occurrence Download

description: A dataset containing 613856 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ulmus L."
 ]
}

 The dataset includes 613856 records from 2316 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009262-240202131308920/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cpk363
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola confertifolia Chang"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0136864-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8rfgdx
title: Occurrence Download

description: A dataset containing 5244 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-93.409 17.741,-93.19 17.741,-93.19 18.005,-93.409 18.005,-93.409 17.741))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 5244 records from 111 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014312-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2zscj
title: Occurrence Download

description: A dataset containing 7431081 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((175.81055 -40.33091,175.98633 -40.33091,175.98633 -35.90803,175.81055 -35.90803,175.81055 -40.33091))",
 "Geometry POLYGON((165.19043 -47.46573,179.86816 -47.46573,179.86816 -34.09877,165.19043 -34.09877,165.19043 -47.46573))"
 ]
 },
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 7431081 records from 660 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0114769-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ue6n7k
title: Occurrence Download

description: A dataset containing 700 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cleidion brevipetiolatum Pax & K.Hoffm."
 ]
}

 The dataset includes 700 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004091-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qtwt3
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficus involucrata Blume"
 ]
}

 The dataset includes 85 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0096950-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eraxad
title: Occurrence Download

description: A dataset containing 758 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((74.8828125 39.206714688189784, 72.94921875 39.07037496630156, 70.48828125 37.83147590811807, 69.9609375 35.862339387427994, 69.9609375 34.1345372416894, 70.3125 31.92418805228592, 72.94921875 30.268551615948354, 75.9375 30.116616942566043, 77.51953125 28.892774167833785, 79.27734374999999 27.49852196443761, 82.6171875 26.559045185742832, 85.95703125 25.770209018060804, 86.66015624999999 24.176820256574754, 87.1875 23.211053346269885, 90.17578124999999 21.258656334328716, 92.8125 20.1075182313719, 94.21875 21.094745528210435, 99.49218749999999 21.749290854184867, 100.8984375 26.086383331438917, 99.84374999999999 29.35344699294194, 96.6796875 31.024689531512514, 92.8125 30.268551615948354, 90.52734374999999 29.81204611302913, 87.5390625 29.506544774138685, 84.72656249999999 29.65941139332828, 81.73828125 30.87393563361616, 80.68359375 32.22209130227107, 80.15625 34.56990196360932, 79.27734374999999 36.57141951521943, 78.046875 37.55328339311761, 76.46484375 38.522379893268365, 74.8828125 39.206714688189784))",
 "HasCoordinate is true",
 "TaxonKey is Tephrodornis virgatus (Temminck, 1824)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 758 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014313-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.673z7f
title: Occurrence Download

description: A dataset containing 286040 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Solanum nigrum L."
 ]
}

 The dataset includes 286040 records from 1981 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025868-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.455n58
title: Occurrence Download

description: A dataset containing 7287 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bufotes viridis",
 "HasCoordinate is true",
 "Geometry POLYGON((5.87 55.08, 15.04 55.08, 15.04 47.27, 5.87 47.27, 5.87 55.08))"
 ]
}

 The dataset includes 7287 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011471-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.30710834
title: <b>A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding</b>

description: Urban spatial structure maps and uncertainty maps from the paper "A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding"
DOI: 10.6084/m9.figshare.30710834.v2
title: <b>A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding</b>

description: Urban spatial structure maps and uncertainty maps from the paper "A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding"
DOI: 10.6084/m9.figshare.30710834.v1
title: <b>A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding</b>

description: Urban spatial structure maps and uncertainty maps from the paper "A Cognitive Framework for Urban Structure: From VHR Image Perception to GNN-Driven Structural Understanding"
DOI: 10.6084/m9.figshare.30731387
title: Nostalgic technology, missing records, mysteries: How independent video games portray archives and archivists

description: This Master's research drew on archival science and video games studies methodologies to examine three critically acclaimed independent video games from an English language and Western developer context (<i>Her Story</i>, <i>Hypnospace Outlaw</i>, and <i>Blue Prince</i>) and explore:How do independent video games portray archives and archivists in both narrative and gameplay?How do these portrayals reinforce, subvert, or reimagine common stereotypes or assumptions about archives and archivists?The dataset here consists of XLSX-formatted quantitative and qualitative data gathered using checklists and codebooks from previous archival science research (Aldred et al., 2008; Oliver & Daniel, 2015; Long, 2020; & Carroll, 2021) and SRT-formatted automatic YouTube transcriptions of recorded gameplay.
DOI: 10.34810/data1480
title: OpenFOAM files and processed data of thermally-driven winds on Mars: the Gale crater case

description: The dataset contains OpenFOAM files and processed data corresponding to the book chapter titled: Arias, S., Rojas, J. I., & Montlaur, A. (2024). 'Simulations of thermally-driven winds on Mars: the Gale crater case.' The dataset is structured into 4 folders, each corresponding to a solar longitude (Ls): 1) Ls 0, 2) Ls 90, 3) Ls 180, and 4) Ls 270. Each case includes the necessary '0', 'system' and 'constant' folders required for running simulations in OpenFOAM. Additionally, .txt files containing post-processing data, computed at midslope ('midSlope_Data') up to an altitude of 4000 m ('4000m_Altitude'), are provided for each case.
DOI: 10.15468/dl.rhc2xc
title: Occurrence Download

description: A dataset containing 203 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Glinus radiatus",
 "Year 1970-2010"
 ]
}

 The dataset includes 203 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011472-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.es76p8
title: Occurrence Download

description: A dataset containing 357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Japan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Calopteryx atrata"
 ]
}

 The dataset includes 357 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011473-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17648294
title: FlAbDab & TCRDab: Large-Scale MD Simulations of experimentally resolved Antibody and TCR Fv regions (Cagiada M, Spoendlin F.C - 2025)

description: This repository contains molecular dynamics (MD) simulation data associated with the publication "Uncovering the flexibility of CDR loops in antibodies and TCRs through large-scale molecular dynamics" (Cagiada M, Spoendlin F.C - 2025).

The data provided here include MD trajectories and topologies files generated using CALVADOS 3 Fv (CV3Fv) for all experimentally resolve structure of antibodies and T-cell receptors (TCRs) present in FlAbDab and FTCRDab.

For each system we include: coarse grain trajectory (.dcd), all-atom trajectory (.xtc, converted with cg2all), topologies, input files and a set of representative structure for each system. Please refer to the manuscript for additional methodological details.

Simulations were performed using CALVADOS 3 with a custom set of restraint, in a setup named CV3Fv. Simulation productions were run at 298 K for 100ns in total. Please refer to the manuscript for additional methodological details.

N.B: All-atom trajectories may include clashes resulting from the conversion process. If you wish to analyse the trajectory, we recommend using the coarse-grain file.
DOI: 10.15468/dl.kfn2fb
title: Occurrence Download

description: A dataset containing 53062 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'HK'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence."year" &gt;= 2000 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 53062 records were derived from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011462-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17552275
title: FlAbDab & TCRDab: Large-Scale MD Simulations of experimentally resolved Antibody and TCR Fv regions (Cagiada M, Spoendlin F.C - 2025)

description: This repository contains molecular dynamics (MD) simulation data associated with the publication "Uncovering the flexibility of CDR loops in antibodies and TCRs through large-scale molecular dynamics" (Cagiada M, Spoendlin F.C - 2025).

The data provided here include MD trajectories and topologies files generated using CALVADOS 3 Fv (CV3Fv) for all experimentally resolve structure of antibodies and T-cell receptors (TCRs) present in FlAbDab and FTCRDab.

For each system we include: coarse grain trajectory (.dcd), all-atom trajectory (.xtc, converted with cg2all), topologies, input files and a set of representative structure for each system. Please refer to the manuscript for additional methodological details.

Simulations were performed using CALVADOS 3 with a custom set of restraint, in a setup named CV3Fv. Simulation productions were run at 298 K for 100ns in total. Please refer to the manuscript for additional methodological details.

N.B: All-atom trajectories may include clashes resulting from the conversion process. If you wish to analyse the trajectory, we recommend using the coarse-grain file.
DOI: 10.15468/dl.v2ystv
title: Occurrence Download

description: A dataset containing 4514 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is South Africa",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "TaxonKey is Acinonyx jubatus"
 ]
}

 The dataset includes 4514 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011474-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60545/cugowa
title: ANT COMMUNITIES IN THE GALÁPAGOS: A BASELINE FOR BIODIVERSITY MONITORING

description: This dataset provides occurrence-level records from the first two years (2023–2024) of the annual ant monitoring program conducted on San Cristóbal Island, Galápagos (Ecuador). San Cristóbal is the second most populated island in the archipelago and a major port of entry. Sampling followed a standardized protocol combining pitfall trapping and manual collection across an altitudinal range (0–600 m a.s.l.), three native plant covers, and three land-use categories: urban, agricultural, and protected areas.

Ant specimens were identified to species or morphospecies level using published taxonomic keys. The dataset includes 79 COI-5P accessions, which correspond to 32 Barcode Index Numbers (BINs) assigned in BOLD, complementing the morphological identifications.

This first release includes all sampling event data from January 2023 and May–June 2024. The dataset comprises 1,755 occurrence records representing 17,816 specimens from 31 ant species, accounting for about 66% of the species reported for the archipelago. Samples without ants were also included in the dataset and recorded as “No catch” (Formicidae = 0). Data from subsequent years will be incorporated as the monitoring program continues.
DOI: 10.15468/dl.wyzmqm
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is Pakistan",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Polystichum lonchitis"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011475-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8h9se6
title: Occurrence Download

description: A dataset listing the 150323 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "Geometry POLYGON((-25.05572 -57.21320,81.05572 -57.21320,81.05572 -14.78680,-25.05572 -14.78680,-25.05572 -57.21320))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 150323 records were derived from 1291 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011375-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.