cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26022/ieda/324089
title: Processed Acoustic Backscatter and Swath Bathymetry Data acquired during R/V Roger Revelle expedition RR1111 (2011)

description: This data set was acquired with a Kongsberg Maritime EM122 Multibeam Sonar during R/V Roger Revelle expedition RR1111 conducted in 2011 (Chief Scientist: Dr. Ren-Chieh Lien). These data files are of MBSystem-compatible format and include Acoustic Backscatter and Swath Bathymetry data that were processed after acquisition. This data was processed by the GMRT Team and was included in the Global Multi-Resolution Topography (GMRT) Synthesis (version 3.4).
DOI: 10.1594/ieda/321257
title: Processed XBT Expendable Probe Data from the Southern Ocean acquired during the Nathaniel B. Palmer expedition NBP1402 (2014)

description: This data set was acquired with a Sippican MK21 XBT Expendable Probe during Nathaniel B. Palmer expedition NBP1402 conducted in 2014 (Chief Scientist: Dr. Amy Leventer). These data files are of Sippican MK21 Export Data File format and include Temperature data that have not been processed.
DOI: 10.1594/ieda/314908
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Maurice Ewing expedition EW9505 (1995)

description: This data set was acquired with a ship-based Atlas Hydrosweep DS Multibeam Sonar system and BellAerospace BGM-3 Gravimeter during Maurice Ewing expedition EW9505 conducted in 1995 (Chief Scientist: Dr. Andrew Fisher). These data files are of MGD77 format and include Gravity Field and Singlebeam Bathymetry data and were processed after data collection. Data were acquired as part of the project(s): The Fine-Scale Hydrogeology & Geochemistry of the Areas of Active Venting in Middle Valley, a Sedimented Rift of the Northern Juan De Fuca Ridge, and funding was provided by NSF grant(s): OCE94-15762, OCE94-15869, OCE94-17011, and OCE95-96253.
DOI: 10.26022/ieda/329907
title: Processed bathymetry (GeoTIFF grid format raster images) derived from Geoswath multibeam data in Eastern Long Island Sound (2018)

description: This data set was acquired with a 250 kHz Kongsberg Geoswath Phase Measuring Bathymetry Sonar (PMBS) system mounted in the moon pool of R/V Lowell Weicker. Horizontal accuracy was provided by DGPS augmented by RTK corrections from the Advanced Continuous Operation Reference Network (ACORN). This is a Connecticut statewide system of base stations that provides real-time corrections for GPS equipment, operated by the University of Connecticut through a partnership with CTDOT (http://acorn.uconn.edu). Tides were corrected to MLLW based on tide gauge data from NOAA Tide Station at New London, Connecticut (Station ID: 8461490). Sound velocity profiles (SVP) were conducted every three hours to acquire sound speed data using UConn's Valeport SVP system. Data acquisition was performed using the Geoswath+ acquisition software and saved as .rff files for subsequent post-processing. The system recorded bathymetry and sidescan sonar data along with heave, pitch and roll data from a Seatex MRU-5 mounted on the Geoswath transducer. Positional information for all equipment (GPS, transducer, MRU) offsets and latencies can be found in the CARIS vessel file included with the raw data. Line spacing was set at 25 meters for the majority of the survey area with a 30 meter spacing adopted in deeper areas (information provided in the daily Survey Logs). The acquired bathymetry data were processed using CARIS software. The data were acquired and processed in two individual blocks. The final bathymetry grids are in GeoTIFF (Raster) grid format, projected in WGS84 UTM 18N (EPSG: 32618) with 1m resolution. The data were collected and assembled as part of the "The Long Island Sound Seafloor Mapping Initiative Phase II – Eastern Long Island Sound" project conducted by the Long Island Sound Mapping and Research Collaborative (LISMaRC, Principal Investigator: Ivar G. Babb). Funding provided by the Long Island Sound Seafloor Mapping Fund administered cooperatively by the EPA Long Island Sound Study and the Connecticut Department of Energy and Environmental Protection (DEEP).
DOI: 10.1594/ieda/308196
title: Raw XCTD Expendable Probe Data from the Drake Passage acquired during the Laurence M. Gould expedition LMG0305 (2003)

description: This data set was acquired with a Sippican MK21 XCTD Expendable Probe during Laurence M. Gould expedition LMG0305 conducted in 2003 (Investigator(s): Dr. Dave Leger). These data files are of EDF format and include Temperature and Salinity data that have not been processed. Data were acquired while the Laurence M. Gould was in transit.
DOI: 10.1594/ieda/310652
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1007 (1966)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1007 conducted in 1966 (Chief Scientist: Dr. Alberto Lonardi). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/306232
title: Unprocessed Magnetometer Data acquired with TowCam at the East Pacific Rise at 9N during the Atlantis expedition AT15-13 (2006)

description: This data set was acquired with a Magnetometer on the TowCam platform during Atlantis expedition AT15-13 conducted in 2006 (Chief Scientist: Dr. Karen Von Damm; Investigator(s): Dr. Daniel Fornari and Dr. S. Adam Soule). These data files are of Text File (ASCII) format and include Magnetic Field data that have not been processed. Data were acquired as part of the project(s): Temporal Variations in Hydrothermal Fluid Chemistry at 9-10N East Pacific Rise: Elucidating Ties to Crustal and Biological Processes, and funding was provided by NSF grant(s): OCE02-42038, OCE03-27126, OCE03-27261, OCE05-25863, OCE05-27208, and OCE07-01196.
DOI: 10.1594/ieda/310654
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1008 (1966)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1008 conducted in 1966 (Chief Scientist: Dr. William Ludwig). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/310658
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1010 (1966)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1010 conducted in 1966 (Chief Scientist: Dr. Charles Fray). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/318117
title: Underway Hydrographic, Weather and Ship-state Data (JGOFS) from Laurence M. Gould expedition LMG0202 (2002)

description: This data set was acquired with a ship-based Navigation system, Thermosalinograph, Meteorological Sensor, Echosounder Sonar, and Fluorometer during Laurence M. Gould expedition LMG0202 conducted in 2002 (Investigator(s): Dr. Dave Leger). These data files are of JGOFS format and include Fluorescence, Salinity, Bathymetry, Visible Radiation, Temperature, Conductivity, Infrared Radiation, Meteorological, and Navigation data. This data set was created from calibrated data decimated at 1-minute intervals. Several fields are derived measurements from more than a single raw input. Data were acquired while the Laurence M. Gould was in transit.
DOI: 10.1594/ieda/313233
title: Processed ship-based Navigation Data acquired during the Vema expedition V2802 (1970)

description: This data set was acquired with a ship-based Navigation system during Vema expedition V2802 conducted in 1970 (Chief Scientist: Dr. Charles Windisch). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/317653
title: Raw XBT Expendable Probe Data from the Pacific Ocean (Southern) acquired during the Nathaniel B. Palmer expedition NBP1102 (2011)

description: This data set was acquired with a Sippican MK21 XBT Expendable Probe during Nathaniel B. Palmer expedition NBP1102 conducted in 2011 (Chief Scientist: Dr. Jim Swift). These data files are of Sippican MK21 Export Data File format and include Temperature data that have not been processed. Data were acquired as part of the project(s): Climate variability and predictability (CLIVAR).
DOI: 10.1594/ieda/307428
title: Ship-based Trackline Geophysical Data (MGD77) from the Amundsen Sea, Antarctica acquired during the Nathaniel B. Palmer expedition NBP0702 (2007)

description: This data set was acquired with a ship-based Gravimeter and Subbottom Profiler during Nathaniel B. Palmer expedition NBP0702 conducted in 2007 (Chief Scientist: Dr. Stan Jacobs; Investigator(s): Dr. Frank Nitsche). These data files are of MGD77 format and include Bathymetry, Gravity (Field and Free Air Anomaly) data that were processed during the cruise. Data were acquired as part of the project(s): The Amundsen Continental Shelf and the Antarctic Ice Sheet, and funding was provided by NSF grant(s): ANT04-40775
DOI: 10.1594/ieda/316613
title: Raw XBT Expendable Probe Data from the Antarctic Peninsula acquired during the Nathaniel B. Palmer expedition NBP1002 (2010)

description: This data set was acquired with a Sippican MK21 XBT Expendable Probe during Nathaniel B. Palmer expedition NBP1002 conducted in 2010 (Chief Scientist: Dr. Jose Torres). These data files are of Sippican MK21 Export Data File format and include Temperature data that have not been processed. Data were acquired as part of the project(s): Collaborative research: Possible climate−induced change in the distribution of Pleuragramma antarcticum on the Western Antarctic Peninsula shelf., WAP−flux: New Tools to Study the Fate of Phytoplankton Production in the West Antarctic Peninsula, and Reconciling the marine and terrestrial records of glaciation of the South Shetland Islands, and funding was provided by NSF grant(s): ANT07-41348.
DOI: 10.1594/ieda/310660
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1011 (1966)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1011 conducted in 1966 (Chief Scientist: Dr. Charles Fray). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/315186
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Robert D. Conrad expedition RC2215 (1979)

description: This data set was acquired with a ship-based Echosounder during Robert D. Conrad expedition RC2215 conducted in 1979 (Chief Scientist: Dr. Fred Roessler). These data files are of MGD77 format and include Singlebeam Bathymetry data that were processed after data collection. Funding was provided by NSF grant(s): EAR78-02610 and OCE79-05473.
DOI: 10.1594/ieda/315190
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Robert D. Conrad expedition RC2302 (1982)

description: This data set was acquired with a ship-based Echosounder, Gravimeter, and Magnetometer during Robert D. Conrad expedition RC2302 conducted in 1982 (Chief Scientist: Dr. Steve Cande). These data files are of MGD77 format and include Gravity Field, Magnetic Field, and Singlebeam Bathymetry data that were processed after data collection.
DOI: 10.26022/ieda/331470
title: Processed Seismic Navigation Data (P1 format) from the Cascadia subduction zone, acquired during Langseth cruise MGL2208 (2022)

description: This data set was acquired with the LDEO Multi-Channel Seismic system during a seismic survey of the Cascadia subduction zone, as part of R/V Marcus G. Langseth cruise MGL2208 (Chief Scientist Glenn Spinelli). The data files are in U.K.O.O.A. P1/90 format and contain Seismic Navigation data that was processed after acquisition. These processed P190 navigation files should be used for processing the MCS data. The data set was acquired as part of the project called CHINOoK: Cascadia Hydrothermal circulation IN Ocean (K)rust. Funding was provided by NSF awards OCE20-34896 and OCE20-34872.
DOI: 10.1594/ieda/312821
title: Processed ship-based Navigation Data from the Gulf of California acquired during the Francisco de Ulloa expedition UL0608 (2006)

description: This data set was acquired with a ship-based Navigation system during Francisco de Ulloa expedition UL0608 conducted in 2006 (Chief Scientist: Dr. Peter Lonsdale). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection. Data were acquired as part of the project(s): The Four-Dimensional Pattern of Rifting In The Southern Gulf of California, and funding was provided by NSF grant(s): OCE02-03348 and OCE02-03616.
DOI: 10.1594/ieda/315928
title: Raw XBT Expendable Probe Data from the Pacific Ocean (Southern) acquired during the Nathaniel B. Palmer expedition NBP0304C (2003)

description: This data set was acquired with a Sippican MK21 XBT Expendable Probe during Nathaniel B. Palmer expedition NBP0304C conducted in 2003 (Chief Scientist: Dr. Steve Cande). These data files are of Sippican MK21 Export Data File format and include Temperature data that have not been processed. Data were acquired as part of the project(s): Production Observation Through Another Translatitudinal Oceanic Expedition (POTATOE) and Late Cretaceous and Cenozoic Reconstructions of the Southwest Pacific, and funding was provided by NSF grant(s): OPP01-25172, OPP01-26334, OPP01-26340, and ANT03-38317.
DOI: 10.1594/ieda/100372
title: Processed Multibeam Sonar Data (version 2) from the Amundsen Sea acquired during Nathaniel B. Palmer expedition NBP0702 (2007)

description: This data set was acquired with a Kongsberg model EM120 multibeam sonar system during Nathaniel B. Palmer expedition NBP0702 conducted in 2007 (Chief Scientist: Dr. Stan Jacobs). These data files include Acoustic Backscatter, Sidescan, Swath Bathymetry data and were processed at sea using the open source MB-System multibeam sonar processing software. These data are included in the GMRT Synthesis, beginning with version 1. Data were acquired as part of the project(s): The Amundsen Continental Shelf and the Antarctic Ice Sheet, and funding was provided by the U.S. National Science Foundation.
DOI: 10.1594/ieda/306618
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Islas Orcadas expedition I1678 (1978)

description: This data set was acquired with a ship-based Gravimeter during Islas Orcadas expedition I1678 conducted in 1978 (Chief Scientist: Dr. Daniel Georgi). These data files are of MGD77 format and include Gravity Free Air Anomaly data and were processed after data collection.
DOI: 10.1594/ieda/315287
title: Ship-based Trackline Geophysical Data (MGD77) acquired during the Vema expedition V1502 (1958)

description: This data set was acquired with a ship-based Echosounder Sonar during Vema expedition V1502 conducted in 1958 (Chief Scientist: Dr. Joseph Worzel). These data files are of MGD77 format and include Singlebeam Bathymetry data and were processed after data collection.
DOI: 10.5281/zenodo.13328275
title: Systematic benchmarking of computational methods to identify spatially variable genes: Part 1

description: Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field. Here, we present a systematic evaluation of 14 methods using 60 simulated datasets generated by four different simulation strategies, 12 real-world transcriptomics, and three spatial ATAC-seq datasets. We find that spatialDE2 consistently outperforms the other benchmarked methods, and Moran’s I achieves competitive performance in different experimental settings. Moreover, our results reveal that more specialized algorithms are needed to identify spatially variable peaks.
DOI: 10.5281/zenodo.8291035
title: Systematic benchmarking of computational methods to identify spatially variable genes: Part 1

description: Spatially resolved transcriptomics offers unprecedented insight by enabling the profiling of gene expression within the intact spatial context of cells, effectively adding a new and essential dimension to data interpretation. To efficiently detect spatial structure of interest, an essential step in analyzing such data involves identifying spatially variable genes. Despite researchers having developed several computational methods to accomplish this task, the lack of a comprehensive benchmark evaluating their performance remains a considerable gap in the field. Here, we present a systematic evaluation of 14 methods using 60 simulated datasets generated by four different simulation strategies, 12 real-world transcriptomics, and three spatial ATAC-seq datasets. We find that spatialDE2 consistently outperforms the other benchmarked methods, and Moran’s I achieves competitive performance in different experimental settings. Moreover, our results reveal that more specialized algorithms are needed to identify spatially variable peaks.
DOI: 10.1594/ieda/315925
title: Raw Multi-Channel Seismic Shot Data from the Woodlark Basin acquired during R/V Maurice Ewing expedition EW9910 (1999)

description: This data set was acquired with the LDEO Multi-Channel Seismic system during R/V Maurice Ewing expedition EW9910 conducted in 1999 (Chief Scientist: Dr. John Mutter). These data files are of SEGY format and include Multi-Channel Reflection Seismic shot data that have not been processed. Data were acquired as part of the project: Natural Seismicity Investigation of Active Continental Breakup in the Western Woodlark Basin, and funding was provided by NSF grants: JOI-X-XX, OCE01-17451, OCE01-18531, OCE01-18568, OCE97-30567, OCE97-30824, OCE97-30864, OCE97-30972, and OCE99-96317.
DOI: 10.6084/m9.figshare.26633238.v1
title: Additional file 2 of Spatiotemporal evolution of AML immune microenvironment remodeling and RNF149-driven drug resistance through single-cell multidimensional analysis

description: Additional file 2. Analysis of predicted drug sensitivity to various drugs in each patient.
DOI: 10.1594/ieda/312871
title: Processed ship-based Navigation Data acquired during the Vema expedition V1408 (1958)

description: This data set was acquired with a ship-based Navigation system during Vema expedition V1408 conducted in 1958 (Chief Scientist: Dr. Maurice Ewing). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.26022/ieda/330907
title: LISMaRC Phase II seafloor video (MPEG4 format) from the USGS SEABOSS sled, eastern Long Island Sound (2017-18)

description: These seafloor videos were acquired with the USGS SEABOSS sled during the 2017-2018 field surveys in eastern Long Island Sound. The SEABOSS sled was towed from R/V Connecticut. The video files are in MPEG4 format. The Long Island Sound Mapping and Research Collaborative (LISMaRC) is a joint effort of the University of Connecticut, the University of New Haven and the US Geological Survey. Funding provided by the Long Island Sound Seafloor Mapping Fund administered cooperatively by the EPA Long Island Sound Study and the Connecticut Department of Energy and Environmental Protection (DEEP).
DOI: 10.1594/ieda/100406
title: Contours of Ross Sea Bathymetry (2004)

description: This data set provides the original contours produced by Fred Davey for his map of the Ross Sea. The data is in Shapefile format.
DOI: 10.1594/ieda/310036
title: Raw XBT Expendable Probe Data from the East Pacific Rise Spreading Center acquired during the Marcus G. Langseth expedition MGL0812 (2008)

description: This data set was acquired with a Sippican T-5 XBT Expendable Probe during Marcus G. Langseth expedition MGL0812 conducted in 2008 (Chief Scientist: Dr. John Mutter; Investigator(s): Dr. John Mutter and Dr. Suzanne Carbotte). These data files are of Sippican MK21 Export Data File format and include Temperature and Sound Velocity data that have not been processed. Data were acquired as part of the project(s): 3-D/4-D Seismic Reflection Imaging of the Magmatic-Hydrothermal System at the East Pacific Rise Ridge 2000 Integrated Study Site at 9-50' N, and funding was provided by NSF grant(s): OCE03-27872.
DOI: 10.1594/ieda/308211
title: Raw XBT Expendable Probe Data from the Drake Passage acquired during the Laurence M. Gould expedition LMG0602 (2006)

description: This data set was acquired with a Sippican MK21 XBT Expendable Probe during Laurence M. Gould expedition LMG0602 conducted in 2006 (Chief Scientist: Dr. Laurence Madin). These data files are of Sippican MK21 Export Data File format and include Temperature data that have not been processed. Data were acquired as part of the project(s): Salpa thompsoni in the Southern Ocean: Bioenergetics, population dynamics and biogeochemical impact, and funding was provided by NSF grant(s): ANT03-38090.
DOI: 10.1594/ieda/317075
title: Raw Single-Channel Seismic Shot Data from the Costa Rica Rift acquired during R/V Maurice Ewing expedition EW9416 (1994)

description: This data set was acquired with the LDEO Single-Channel Seismic system during R/V Maurice Ewing expedition EW9416 conducted in 1994 (Chief Scientist: Dr. Robert Detrick). These data files are of SEGY format and include Single-Channel Reflection Seismic shot data that have not been processed. Data were acquired as part of the project: A Seismic Experiment at Hole 504B: Correlation of Geologic and Seismic Structure, and funding was provided by NSF grants: OCE90-00603, and OCE93-01058.
DOI: 10.1594/ieda/306234
title: Unprocessed TowCam Navigation Data from the East Pacific Rise at 9N acquired during the Atlantis expedition AT15-13 (2006)

description: This data set was acquired with a Navigation system on the TowCam platform during Atlantis expedition AT15-13 conducted in 2006 (Chief Scientist: Dr. Karen Von Damm; Investigator(s): Dr. Daniel Fornari and Dr. S. Adam Soule). These data files are of Text File (ASCII) format and include Navigation data that have not been processed. Data were acquired as part of the project(s): Temporal Variations in Hydrothermal Fluid Chemistry at 9-10N East Pacific Rise: Elucidating Ties to Crustal and Biological Processes, and funding was provided by NSF grant(s): OCE02-42038, OCE03-27126, OCE03-27261, OCE05-25863, OCE05-27208, and OCE07-01196. This data was cited by Soule et al., 2007 and Fundis et al., 2010.
DOI: 10.1594/ieda/310662
title: Processed ship-based Navigation Data acquired during the Robert D. Conrad expedition RC1012 (1966)

description: This data set was acquired with a ship-based Navigation system during Robert D. Conrad expedition RC1012 conducted in 1966 (Chief Scientist: Dr. Robert Leyden). These data files are of Text File (ASCII) format and include Navigation data and were processed after data collection.
DOI: 10.1594/ieda/308200
title: Raw XCTD Expendable Probe Data from the Drake Passage acquired during the Laurence M. Gould expedition LMG0402 (2004)

description: This data set was acquired with a Sippican MK21 XCTD Expendable Probe during Laurence M. Gould expedition LMG0402 conducted in 2004 (Chief Scientist: Dr. Christopher Measures). These data files are of EDF format and include Salinity and Temperature data that have not been processed. Data were acquired as part of the project(s): Plankton Community Structure and Iron Distribution in the Southern Drake Passage, and funding was provided by NSF grant(s): ANT02-30445.