cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.26506030
title: Data and scripts

description: Lake Albert, one of Africa's Great Lakes, is an important freshwater ecosystem facing significant environmental challenges. Despite its importance, relatively little is known about the composition of the lake's planktonic communities. Here, we used environmental DNA (eDNA) metabarcoding to assess the biodiversity of Lake Albert, focusing on common eukaryotic and metazoan communities. We collected surface water samples along environmental gradients at three sites: the southern inflow from the Semliki River, the central part of the lake, and the northern inflow/outflow from the White Nile. Our results showed clear differences in community composition between these sites. Cyclopoid copepods dominated the pelagic communities, in agreement with previous results on zooplankton. Distance from shore was also an important determinant of community composition, consistent with assumptions of differences in nutrient and oxygen availability between coastal and pelagic conditions. eDNA metabarcoding allowed a comprehensive analysis of biodiversity patterns, but the lack of reference sequence data limited accurate taxonomic assignments. This is a major barrier to using the full power of eDNA to study the most biodiverse regions of the world. Efforts are urgently needed to generate reference sequences from the tropics to support the use of eDNA to monitor the highly biodiverse tropical ecosystems.
DOI: 10.6084/m9.figshare.26506030.v1
title: Data and scripts

description: Lake Albert, one of Africa's Great Lakes, is an important freshwater ecosystem facing significant environmental challenges. Despite its importance, relatively little is known about the composition of the lake's planktonic communities. Here, we used environmental DNA (eDNA) metabarcoding to assess the biodiversity of Lake Albert, focusing on common eukaryotic and metazoan communities. We collected surface water samples along environmental gradients at three sites: the southern inflow from the Semliki River, the central part of the lake, and the northern inflow/outflow from the White Nile. Our results showed clear differences in community composition between these sites. Cyclopoid copepods dominated the pelagic communities, in agreement with previous results on zooplankton. Distance from shore was also an important determinant of community composition, consistent with assumptions of differences in nutrient and oxygen availability between coastal and pelagic conditions. eDNA metabarcoding allowed a comprehensive analysis of biodiversity patterns, but the lack of reference sequence data limited accurate taxonomic assignments. This is a major barrier to using the full power of eDNA to study the most biodiverse regions of the world. Efforts are urgently needed to generate reference sequences from the tropics to support the use of eDNA to monitor the highly biodiverse tropical ecosystems.
DOI: 10.15468/dl.7be9hm
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.462431 -37.296516, 143.462431 -37.303253, 143.469168 -37.303253, 143.469168 -37.298762, 143.466923 -37.298762, 143.466923 -37.296516, 143.462431 -37.296516)), ((143.469168 -37.303253, 143.469168 -37.305499, 143.47366 -37.305499, 143.47366 -37.303253, 143.469168 -37.303253)))"
 ]
}

 The dataset includes 142 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052645-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wt796v
title: Occurrence Download

description: A dataset containing 1273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Plethodon cheoah Highton & Peabody, 2000)"
 ]
}

 The dataset includes 1273 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052646-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4m2hn7
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meretrix lusoria (Röding, 1798)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 228 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052647-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/8fcxkffhm7.1
title: Business Analytics

description: The dataset can be used to develop an economic model capturing drivers in a real case scenario towards energy and specifically Oil energy.
DOI: 10.15468/dl.2fm39b
title: Occurrence Download

description: A dataset containing 40 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((143.653324 -37.296516, 143.653324 -37.303253, 143.657815 -37.303253, 143.657815 -37.307745, 143.660061 -37.307745, 143.660061 -37.305499, 143.664553 -37.305499, 143.664553 -37.307745, 143.666799 -37.307745, 143.666799 -37.305499, 143.669044 -37.305499, 143.669044 -37.303253, 143.673536 -37.303253, 143.673536 -37.305499, 143.675782 -37.305499, 143.675782 -37.303253, 143.680273 -37.303253, 143.680273 -37.298762, 143.673536 -37.298762, 143.673536 -37.296516, 143.660061 -37.296516, 143.660061 -37.298762, 143.657815 -37.298762, 143.657815 -37.296516, 143.653324 -37.296516)), ((143.669044 -37.305499, 143.669044 -37.307745, 143.673536 -37.307745, 143.673536 -37.305499, 143.669044 -37.305499)), ((143.680273 -37.303253, 143.680273 -37.314482, 143.682519 -37.314482, 143.682519 -37.303253, 143.680273 -37.303253)))"
 ]
}

 The dataset includes 40 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052649-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34770/s1z7-fh55
title: Telomere Length in Preterm Infants

description: The README file conatins the methods as well as variable information, the
 excel file contains the worksheet called 'DATA' which contains
 the datafile This entry contains the data used in the PLOS ONE publication
 entitled, "Characteristics of salivary telomere length shortening in
 preterm infants" by Schneper et al. The objective of the study was to
 examine the association between gestational age, telomere length (TL) and
 rate of shortening in newborns. Genomic DNA was isolated from buccal
 samples of 39 term infants at birth and one year and 32 preterm infants at
 birth, term-adjusted age (40 weeks post-conception) and age one-year
 corrected for gestational duration. Telomere length was measured by
 quantitative real-time PCR. Demographic and clinical data were collected
 during clinic or research visits and from hospital records. Socioeconomic
 status was estimated using the deprivation category (DEPCAT) scores
 derived from the Carstairs score of the subject's postal code.
DOI: 10.15468/dl.x7e766
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.813395 -37.298762, 142.813395 -37.303253, 142.815641 -37.303253, 142.815641 -37.298762, 142.813395 -37.298762))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052651-240626123714530/datasets/export for details.
DOI: 10.15468/dl.kcdgd5
title: Occurrence Download

description: A dataset listing the 5 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-68.96486 2.5137,-74.8678 -4.76512,-74.43536 -7.48932,-58.72582 -30.34132,-51.70555 -35.67457,-32.489 -4.24299,-51.34969 4.99919,-68.96486 2.5137))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hydrochoerus hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset's 5 records were derived from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052636-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3wbrq9
title: Occurrence Download

description: A dataset containing 70807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calidris alpina (Linnaeus, 1758)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70807 records from 51 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052650-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zerzvn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((142.822378 -37.296516, 142.822378 -37.298762, 142.817887 -37.298762, 142.817887 -37.307745, 142.824624 -37.307745, 142.824624 -37.305499, 142.822378 -37.305499, 142.822378 -37.303253, 142.831361 -37.303253, 142.831361 -37.298762, 142.829116 -37.298762, 142.829116 -37.296516, 142.822378 -37.296516))"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052652-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12167647
title: Adsorption of drugs on nanoplastics: Modeling challenges and experimental proof - datasets and structures
DOI: 10.5281/zenodo.12167648
title: Adsorption of drugs on nanoplastics: Modeling challenges and experimental proof - datasets and structures
DOI: 10.15468/dl.qgtzzn
title: Occurrence Download

description: A dataset containing 322949 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Oceania, Asia)",
 "OccurrenceStatus is Present",
 "TaxonKey is Orthoptera"
 ]
}

 The dataset includes 322949 records from 722 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052610-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9tny66
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tringa alpina Linnaeus, 1758",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052653-240626123714530/datasets/export for details.
DOI: 10.15468/dl.kcjq34
title: Occurrence Download

description: A dataset containing 296193 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Aythya australis (Eyton, 1838)"
 ]
}

 The dataset includes 296193 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052591-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jazcqm
title: Occurrence Download

description: A dataset containing 6497982 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Peru",
 "DatasetKey is EOD – eBird Observation Dataset"
 ]
}

 The dataset includes 6497982 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052594-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dtm5ax
title: Occurrence Download

description: A dataset containing 2481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "Geometry POLYGON((-68.96486 2.5137,-74.8678 -4.76512,-74.43536 -7.48932,-58.72582 -30.34132,-51.70555 -35.67457,-32.489 -4.24299,-51.34969 4.99919,-68.96486 2.5137))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Hydrochoerus hydrochaeris (Linnaeus, 1766)"
 ]
}

 The dataset includes 2481 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052654-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkkkmq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.186198 -37.298762, 143.186198 -37.303253, 143.190689 -37.303253, 143.190689 -37.298762, 143.186198 -37.298762))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052655-240626123714530/datasets/export for details.
DOI: 10.15468/dl.pyh33m
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Etelis coruscans Valenciennes, 1862",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 34 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052656-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5bgrwc
title: Occurrence Download

description: A dataset containing 19 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.644341 -37.298762, 143.644341 -37.303253, 143.651078 -37.303253, 143.651078 -37.298762, 143.644341 -37.298762))"
 ]
}

 The dataset includes 19 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052657-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.auna8h
title: Occurrence Download

description: A dataset containing 236585 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Wild bees of Belgium"
 ]
}

 The dataset includes 236585 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052643-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.12747267
title: BTS Raw Data

description: This repository contains the raw scanning fluorescence correlation spectroscopy (sFCS) data accompanying our publication describing the brightness transit statistics (BTS) analysis:

Quantifying biomolecular organisation in membranes with brightness-transit statisticsbyFalk Schneider, Pablo F. Cespedes, Narain Karedla, Michael L. Dustin, Marco Fritzsche

The publication can be found here:

[LINK to publication will be added when published online]

 

The files are organized as .zip-files by Figure and condition:Figure1_FreeDiffusionSimulation.zip: Simulated sFCS data of freely diffusing molecules of different brightness and at different diffusion coefficients.

Figure1_OligomerizationSimulations.zip: Simulated sFCS data on freely diffusing molecules at different oligomeric states.

Figure 2_EGFP-His_data: Raw sFCS data (from Zeiss780) on EGFP-His on supported lipid bilayer as control and treated with anti-GFP antibody and secondary antibody as well as anti-GFP nanobody

Figure2_CD40_in_vitro_data_concentration: Raw sFCS data (from Zeiss780) on CD40-His on supported lipid bilayer at different concentrations

Figure2_AF488-His: Raw sFCS data (from Zeiss780) on AlexaFluor488-His on supported lipid bilayer.

Figure2_CD40_invitro_antibodies_CD40LG: Raw sFCS data (from Zeiss780) of CD40-His (labelled with AF488) on supported lipid bilayer and treated with anti-CD40 antibodies or CD40LG.

Figure3_CD40_bilayer_with_cells: Raw sFCS data (from Zeiss780) on CD40-AF488 on supported lipid bilayer in presence of T cells (stimulated and quiescent).

Figure3_antiCD40fab-bilayer: Raw sFCS data (from Zeiss980) on anti-CD40-fab-His on supported lipid bilayer in presence of B and T cells.
DOI: 10.5281/zenodo.12747268
title: BTS Raw Data

description: This repository contains the raw scanning fluorescence correlation spectroscopy (sFCS) data accompanying our publication describing the brightness transit statistics (BTS) analysis:

Quantifying biomolecular organisation in membranes with brightness-transit statisticsbyFalk Schneider, Pablo F. Cespedes, Narain Karedla, Michael L. Dustin, Marco Fritzsche

The publication can be found here:

[LINK to publication will be added when published online]

 

The files are organized as .zip-files by Figure and condition:Figure1_FreeDiffusionSimulation.zip: Simulated sFCS data of freely diffusing molecules of different brightness and at different diffusion coefficients.

Figure1_OligomerizationSimulations.zip: Simulated sFCS data on freely diffusing molecules at different oligomeric states.

Figure 2_EGFP-His_data: Raw sFCS data (from Zeiss780) on EGFP-His on supported lipid bilayer as control and treated with anti-GFP antibody and secondary antibody as well as anti-GFP nanobody

Figure2_CD40_in_vitro_data_concentration: Raw sFCS data (from Zeiss780) on CD40-His on supported lipid bilayer at different concentrations

Figure2_AF488-His: Raw sFCS data (from Zeiss780) on AlexaFluor488-His on supported lipid bilayer.

Figure2_CD40_invitro_antibodies_CD40LG: Raw sFCS data (from Zeiss780) of CD40-His (labelled with AF488) on supported lipid bilayer and treated with anti-CD40 antibodies or CD40LG.

Figure3_CD40_bilayer_with_cells: Raw sFCS data (from Zeiss780) on CD40-AF488 on supported lipid bilayer in presence of T cells (stimulated and quiescent).

Figure3_antiCD40fab-bilayer: Raw sFCS data (from Zeiss980) on anti-CD40-fab-His on supported lipid bilayer in presence of B and T cells.
DOI: 10.17632/3t4jx27j9x.1
title: Effects of grafting on the structure and function of coffee rhizosphere microbiome

description: The obstacle of continuous coffee cultivation is one of the main bottlenecks limiting the development of the coffee industry. The heterologous double root grafting method is one of the effective solutions to alleviate coffee continuous cropping obstacles and reduce soil borne diseases in coffee. But its specific regulatory mechanism is not yet clear. Therefore, a field experiment was established to clarify the effects of heterologous double root grafting methods on the root exudates and soil microbial diversity, structure, and function of Robista and Liberian coffee, and to reveal the mechanism of enhancing the rhizosphere immunity of Robista coffee by grafting Liberian coffee. The results showed significant differences in root exudates, rhizosphere microbial structure and function between Robusta coffee and Liberian coffee. Although Liberian coffee has lower diversity of rhizosphere microbial communities and relatively higher abundance of potential pathogenic bacteria, its resistance to potential diseases is stronger. Connecting to the roots of Liberian coffee significantly enhances the secretion of resistance substances in Robusta coffee roots, increases the relative abundance of potential beneficial bacteria, and reduces the relative abundance of potential pathogenic fungi, which helps to enhance the rhizosphere immunity of Robusta coffee roots to soil borne diseases. The results indicated that by connecting to the roots of Liberian coffee, it can obtain stronger resistant roots and enhance its own rhizosphere immunity, alleviating continuous cropping obstacles in Robusta coffee plants. The results of this study provide important basis for a deeper understanding of the regulatory mechanism of grafting on coffee rhizosphere microorganisms and for optimizing coffee planting techniques.
DOI: 10.17632/6t2zf9vkc9.1
title: mant-GTP data with Ras under HP

description: The data measured with the spectrometer A (Waseda Univ.) and with the quartz cells (for mant-GTP file) and measured with the spectrometer B (Tokyo Univ.) and the HP-resistant cell (for Ras-mantGDP and Ras-mantGTP file).
Note that the name including "+h" means the data of fluorescence spectra is under hydrostatic pressure.
All file have mant-GTP data in the presence of Ras.
DOI: 10.17632/3t4jx27j9x.2
title: Effects of grafting on the structure and function of coffee rhizosphere microbiome

description: The effect of grafting on the structure and function of coffee rhizosphere microbiota
DOI: 10.17632/c3fgs6r5t9.1
title: Nitrate and silicate fluxes at the sediment-water interface of the deep North Pacific Ocean illuminated by 226Ra/230Th disequilibria

description: Table S1 that provides all measurements from the upper ~50 cm of sediments in the North Pacific Ocean
DOI: 10.17632/c3fgs6r5t9.2
title: Nitrate and silicate fluxes at the sediment-water interface of the deep North Pacific Ocean illuminated by 226Ra/230Th disequilibria

description: All data used to generate figures and tables in the main paper and in the supplementary.
DOI: 10.15468/dl.rnzetk
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Etelis carbunculus Cuvier, 1828",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 44 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052658-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2eeneq
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((143.745402 -37.298762, 143.745402 -37.303253, 143.752139 -37.303253, 143.752139 -37.298762, 143.745402 -37.298762))"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052659-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vw28g9
title: Occurrence Download

description: A dataset containing 2245111 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "TaxonKey is one of (Sapotaceae, Fabaceae, Podocarpaceae)"
 ]
}

 The dataset includes 2245111 records from 1290 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052586-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vajupc
title: Occurrence Download

description: A dataset containing 894525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Picea abies",
 "HasCoordinate is true",
 "Year is 1900,2026"
 ]
}

 The dataset includes 894525 records from 1426 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001476-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.