cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.8pp2rt0
title: Data from: Individual diet differences in a molluscivore shorebird are associated with the size of body instruments for internal processing rather than for feeding

description: Especially in birds, it is widely found that the size of individual prey
 items follows the size of the instruments of prey capture, handling and
 processing, i.e. bill size. In fact, this is the natural history basis of
 major discoveries on adaptative evolution in the face of changing food
 resources. In some birds, e.g. the molluscivore shorebirds ingesting
 hard-shelled prey, most of the prey processing process takes place within
 the digestive tract. This study of a salvaged sample of actively feeding
 great knots Calidris tenuirostris accidentally drowned in fishing nets in
 northern China, is the first documentation of diet selection at the level
 of the individual in previously well-studied molluscivore shorebirds. Diet
 composition was not associated with the length of the bill, but with the
 mass of the muscular gizzard. Gizzard mass, which unlike bill length is a
 phenotypically flexible trait, enables great knots to adjust to changing
 food resources as an individual, i.e. instantly responding to the food on
 offer. For migratory species like great knots which rely on seasonal
 sequences of inter distant feeding areas offering prey with a variety of
 characteristics, the capacity to individually adjust appears a key
 adaptation.
description: gizzard determines great
 knot's diet
DOI: 10.48331/scielodata.vhrsgc/pvrpee
title: README.txt
DOI: 10.48331/scielodata.vhrsgc
title: Data for: Community Water Fluoridation and intelligence quotient: Systematic review and meta-analysis of observational studies.

description: Supplemental Material
DOI: 10.5061/dryad.4f30fn5
title: Data from: Wasp waist and flight: convergent evolution in wasps reveals a link between wings and body shapes

description: Insect flight is made possible by different morphological structures:
 wings produce the lift, the thorax drives the wings’ movements and the
 abdomen serves as a secondary control device. As such, the covariation of
 these structures could reflect functional constraints related to flight
 performances. This study examines evolutionary convergences in wasp body
 shapes to provide the first evidence for morphological integration between
 insect wings, thorax and abdomen. Shapes of the fore- and hindwings,
 thorax and petiole (connecting abdomen and thorax) of 22 Vespidae species
 were analyzed using computerized tomography and geometric morphometrics.
 Results show a clear relationship between petiole and wings or thorax
 shapes, but not between wings and thorax. Wasps with elongated bodies have
 pointed wings, both features thought to improve flight maneuverability. In
 contrast, stouter species have rounded wings, which may allow for higher
 flight speeds. These integration patterns suggest that multiple selective
 regimes on flight performance, some of them biased towards maneuverability
 or maximal speed, drove the morphological diversity in Vespidae. The
 results also suggest that wing shapes evolved under constraints related to
 the body type they have to lift. The abdomen morphology is thus another
 factor to take into account to understand the flight performance of
 insects.
description: Studied
 specimensInformation about the
 studied specimens including identification, collect data, weight and scan
 parameters.Scanned-specimens-2016.xlsxScript R of the analyses performed in the studyScript (text file) of the lines of commands used to perform the analyzes in the study. This script relies on other files that are listed at the beginning of the script.Script-wing-abdo-thorax-19-09-04.RAdditional files to run the R scriptFiles required to run the R script. It includes a table of specimen data, landmark coordinates, surface files used for 3D shape visualisation, an R function to visualize shape deformation along a PLS axis for an average shape and not a specific one, and the phylogenetic tree used for the comparative analyses. More details in the README file.Files-for-R-Script.zipThorax - 3DSurface files (.ply) of the mesosoma (~thorax) from the CT-scan 3D models of the 22 specimens. These surface files were used to assess the landmark coordinates to quantify the shape of the mesosoma (~thorax). Raw CT-scan data are not deposited because too large, but can be accessed by contacting the author.Thorax3D.zipAbdomen - 3DSurface files (.ply) of the metasoma from the CT-scan 3D models of the 22 specimens. These surface files were used to assess the landmark coordinates to quantify the shape of the first metasomal tergite (~petiole). Some of the metasoma models were cropped to the 2 first segments to optimize the file size for computational purposes. Raw CT-scan data are not deposited because too large, but can be accessed by contacting the author.Abdomen3D.zip
DOI: 10.5061/dryad.rm4368f
title: Data from: Co-evolution of cerebral and cerebellar expansion in cetaceans

description: Cetaceans possess brains that rank among the largest to have ever evolved,
 either in terms of absolute mass or relative to body size. Cetaceans have
 evolved these huge brains under relatively unique environmental
 conditions, making them a fascinating case study to investigate the
 constraints and selection pressures that shape how brains evolve. Indeed,
 cetaceans have some unusual neuroanatomical features, including a thin but
 highly folded cerebrum with low cortical neuron density, as well as many
 structural adaptations associated with acoustic communication. Previous
 reports also suggest that at least some cetaceans have an expanded
 cerebellum, a brain structure with wide-ranging functions in adaptive
 filtering of sensory information, the control of motor actions, and
 cognition. Here, we report that, relative to the size of the rest of the
 brain, both the cerebrum and cerebellum are dramatically enlarged in
 cetaceans and show evidence of co-evolution, a pattern of brain evolution
 that is convergent with primates. However, we also highlight several
 branches where cortico-cerebellar co-evolution may be partially decoupled,
 suggesting these structures can respond to independent selection
 pressures. Across cetaceans, we find no evidence of a simple linear
 relationship between either cerebrum and cerebellum size and the
 complexity of social ecology or acoustic communication, but do find
 evidence that their expansion may be associated with dietary breadth. In
 addition, our results suggest that major increases in both cerebrum and
 cerebellum size occurred early in cetacean evolution, prior to the origin
 of the major extant clades, and predate the evolution of echolocation.
description: CCExCet_DRYADTable S1A contains neuroanatomical data for mammal species used in this study. Table S1B contains ecological data for cetaceans used in this study.
DOI: 10.5061/dryad.q2db26m
title: Data from: Linking men‘s voice pitch to actual and perceived trustworthiness across domains

description: Previous research suggests that judgments about a male speaker’s
 trustworthiness vary due to the speaker’s voice pitch (mean F0) and differ
 across domains. Mixed results in terms of the direction and extent of such
 effects have been reported, however. Moreover, no study so far has
 investigated whether men’s mean F0 is, indeed, a valid cue to their
 self-reported and behavioral trustworthiness, and whether trustworthiness
 judgments are accurate. We tested the relation between mean F0 and actual
 general, economic and mating-related trustworthiness in 181 men, as well
 as trustworthiness judgments of 95 perceivers across all three domains.
 Analyses show that men’s mean F0 is not related to Honesty-Humility (as a
 trait indicator of general trustworthiness), trustworthy intentions, or
 trust game behavior, suggesting no relation of mean F0 to general or
 economic trustworthiness. In contrast, results suggest that mean F0 might
 be related to mating-related trustworthiness (as indicated by
 self-reported relationship infidelity). However, lower mean F0 was judged
 as more trustworthy in economic, but less trustworthy in mating-related
 domains and rather weakly related to judgments of general trustworthiness.
 Trustworthiness judgments were not accurate for general or economic
 trustworthiness, but exploratory analyses suggest that women might be able
 to accurately judge men’s relationship infidelity based on their voice
 pitch. Next to these analyses, we report exploratory analyses involving
 and controlling for additional voice parameters.
description: Linking men‘s voice
 pitch to actual and perceived trustworthiness across
 domainstrust2.csv
DOI: 10.5061/dryad.vk8dk4k
title: Data from: Temporal autocorrelation: a neglected factor in the study of behavioral repeatability and plasticity

description: Quantifying individual variation in labile physiological or behavioral
 traits often involves repeated measures through time, so as to test for
 consistency of individual differences (often using repeatability, ‘R’)
 and/or individual differences in trendlines over time. Another form of
 temporal change in behavior is temporal autocorrelation, which predicts
 observations taken closely together in time to be correlated, leading to
 non-random residuals about individual temporal trendlines. Temporal
 autocorrelation may result from slowly changing internal states (e.g.
 hormone or energy levels), leading to slowly changing behavior.
 Autocorrelation is a well-known phenomenon, but has been largely neglected
 by those studying individual variation in behavior. Here, we provide two
 worked examples which show substantial temporal autocorrelation (r
 &gt; 0.4) is present in spontaneous activity rates of guppies
 (Poecilia reticulata) and house mice (Mus domesticus) in stable laboratory
 conditions, even after accounting for temporal plasticity of individuals.
 Second, we show that ignoring autocorrelation does bias estimates of R and
 temporal reaction norm variances upwards, both in our worked examples and
 in separate simulations. This bias occurs due to the misestimation of
 individual-specific means and slopes. Given the increasing use of
 technologies that generate behavioral and physiological data at high
 sampling rates, we can now study among- and within-individual changes in
 behavior in more detailed ways, including autocorrelation, which we
 discuss from biological and methodological perspectives and provide
 recommendations and annotated R code to help researchers implement these
 models on their data.
description: Guppy_Data_AR
 fileID = Individual Identity
 TimeOfDay = Observation time (24hrs) Date = Date of observation StartDate
 = Date of sampling fish from ponds Mass = Weight of fish in grams at end
 of data collection Day = Day post capture from pond TOD = Time of day of
 observation as proportion Dist_moved = Distance (cm) moved in
 20minsSupplementary Material 1
 - Model CodeModel code for
 analyses
DOI: 10.5061/dryad.fh4vb2c
title: Data from: Allometry of mitochondrial efficiency is set by metabolic intensity

description: Metabolic activity sets the rates of individual resource uptake from the
 environment and resource allocations. For this reason, relationship with
 body size has been heavily documented from ecosystems to cells. Until now,
 most of the studies used the fluxes of oxygen as proxy of energy output
 without knowledge of the efficiency of biological systems to convert
 oxygen into ATP. The aim of this study was to examine the allometry of
 coupling efficiency (ATP/O) of skeletal muscle mitochondria isolated from
 twelve mammal species ranging from 6 g to 550 kg. Mitochondrial
 efficiencies were measured at different steady states of phosphorylation.
 The efficiencies increased sharply at higher metabolic rates. We have
 shown that body mass dependence of mitochondrial efficiency depends on
 metabolic intensity in skeletal muscles of mammals. Mitochondrial
 efficiency positively depends on body mass when mitochondria are close to
 the basal metabolic rate, however the efficiency is independent of body
 mass at the maximum metabolic rate. As a result, it follows that large
 mammals exhibit a faster dynamic increase in ATP/O than small species when
 mitochondria shift from basal to maximal activities. Finally, the
 invariant value of maximal coupling efficiency across mammal species could
 partly explain why scaling exponent values are very close to 1 at maximal
 metabolic rates.
description: Mean data set (Boel et
 al 2019)Mean values of
 mitochondrial bioenergetics parameters for all of the species shown in the
 manuscript.
DOI: 10.5061/dryad.52k0gt5
title: Data from: Soil-mediated impacts of an invasive thistle inhibit the recruitment of certain native plants

description: Invasive plants may outcompete and replace native plant species through a
 variety of mechanisms. Recent evidence indicates that soil microbial
 pathways such as pathogen accumulation may have a considerable role in
 facilitating competition between native and invasive plants. To assess
 microbe-mediated pathways of invasion, we tested the impacts of invaded
 and non-invaded field soils on plant establishment using
 naturally-occurring populations of the common Eurasian invader Cirsium
 arvense (Canada thistle) in Southern Ontario, Canada. Linked field and
 greenhouse experiments were used to quantify differences in the
 germinability and early growth rates of native plant species, depending on
 exposure to the microbial community in invaded or non-invaded soils. The
 invaded microbial community significantly reduced early growth rates for
 two of the seven native species surveyed, and decreased seed germination
 for another. In contrast, the germination and growth of invasive Cirsium
 were not affected by its own soil microbial community. These results
 demonstrate that the invasion of Cirsium arvense can reduce the
 performance of some native plant species through changes to the soil
 microbial community. Different effects on different species suggest this
 invader may also change the relative importance of certain natives in the
 invaded community. If these effects influence plant abundance in the
 field, microbially-mediated interactions in the soil may aid the invasion
 of Cirsium arvense and facilitate the disruption of invaded communities.
description: germination_dataDataset for seed germination experimentgrowth_dataData for seedling growth experiment
DOI: 10.5061/dryad.67n79r2
title: Data from: Landscape, colonization and life history: their effects on genetic diversity in four sympatric species inhabiting a dendritic system

description: To what degree are patterns of genetic structure in fragmented systems the
 result of contemporary landscape vs. history? We examined the distribution
 of genetic diversity as a function of colonization history and
 contemporary landscape in four fish species inhabiting a hierarchically
 fragmented, unaltered system, the Kogaluk drainage (Labrador): lake trout,
 longnose sucker, round whitefish, and lake chub. The footprint of
 colonization history was still observable in the three species where this
 issue was examined regardless of the generations since their arrival. ABC
 analyses suggest colonization took place from the southwest. The species
 exhibit similar diversity patterns despite different Nes and generation
 intervals. Contemporary gene flow was largely negligible except for gene
 flow from a centrally located lake. These results suggest landscape has
 driven colonization history, which still has influence on genetic
 structuring. The species are widespread. Understanding how they behave in
 the pristine Kogaluk provides a baseline against which to evaluate how
 other anthropogenically perturbed systems are performing. Improved
 understanding of historical and contemporary processes is required to
 fully explain diversity patterns in complex metapopulations
description: LNS GENOTYPES 869 FINAL
 SCORESLake Chub Genotypes 734
 final scoresRound Whitefish
 Genotypes 456 final scoresLake Trout Genotypes 867
 final scores
DOI: 10.5061/dryad.77hm40j
title: Data from: Evidence of rapid adaptive trait change to local salinity in the sperm of an invasive fish

description: Invasive species may quickly colonize novel environments, which could be
 attributed to both phenotypic plasticity and an ability to locally adapt.
 Reproductive traits are expected to be under strong selection when the new
 environment limits reproductive success of the invading species. This may
 be especially important for external fertilizers, which release sperm and
 eggs into the new environment. Despite adult tolerance to high salinity,
 the invasive fish Neogobius melanostomus (round goby) is absent from fully
 marine regions of the Baltic Sea, raising the possibility that its
 distribution is limited by tolerance during earlier life-stages. Here, we
 investigate the hypothesis that the spread of N. melanostomus is limited
 by sperm function in novel salinities. We sampled sperm from two invasion
 fronts with higher and lower salinities in the Baltic Sea and tested them
 across a range of salinity levels. We found that sperm velocity and
 percentage of motile sperm declined in salinity levels higher and lower
 than those currently experienced by the Baltic Sea populations, with
 different performance curves for the two fronts. Sperm velocity also
 peaked closer to the home salinity conditions in each respective invasion
 front, with older localities showing an increased fit to local conditions.
 By calculating how the sperm velocity has changed over generations, we
 show this phenotypic shift to be in the range of other fish species under
 strong selection, indicating on-going local adaptation or epigenetic
 acclimation to their novel environment. These results show that while
 immigrant reproductive dysfunction appears to at least partly limit the
 distribution of invasive N. melanostomus in the Baltic Sea, local
 adaptation to novel environments could enable future spread beyond their
 current boundaries.
description: suppl. tables and
 figureSupplementary
 information and compiled data for sperm mobility measurements of Neogobius
 melanostomus from several Baltic Sea locations.Rawdata_Green_et_alRaw data of sperm motility measurements of Neogobius melanostomus from several Baltic Sea localities.
DOI: 10.21223/p3/tfojnz
title: Dataset for: Genotypic Dataset of In Situ Native Mashua Varieties from the Andenes de Cuyocuyo Agrobiodiversity Zone using SilicoDArT markers

description: Molecular markers dataset of 28 cultivated ullucus accessions collected in Cuyocuyo (Puno-Peru) that were genotyped with the HighDensity platform of DArTSeq markers producing 34773 SilicoDArT markers.
DOI: 10.5061/dryad.vb6s1r4
title: Data from: Crocodylomorph cranial shape evolution and its relationship with body size and ecology

description: Crocodylomorpha, which includes living crocodylians and their extinct
 relatives, has a rich fossil record, extending back for more than 200
 million years. Unlike modern semi-aquatic crocodylians, extinct
 crocodylomorphs exhibited more varied lifestyles, ranging from marine to
 fully terrestrial forms. This ecological diversity was mirrored by a
 remarkable morphological disparity, particularly in terms of cranial
 morphology, which seems to be closely associated with ecological roles in
 the group. Here, I use geometric morphometrics to comprehensively
 investigate cranial shape variation and disparity in Crocodylomorpha. I
 quantitatively assess the relationship between cranial shape and ecology
 (i.e. terrestrial, aquatic, and semi-aquatic lifestyles), as well as
 possible allometric shape changes. I also characterise patterns of cranial
 shape evolution and identify regime shifts. I found a strong link between
 shape and size, and a significant influence of ecology on the observed
 shape variation. Terrestrial taxa, particularly notosuchians, have
 significantly higher disparity, and shifts to more longirostrine regimes
 are associated with large-bodied aquatic or semi-aquatic species. This
 demonstrates an intricate relationship between cranial shape, body size
 and lifestyle in crocodylomorph evolutionary history. Additionally,
 disparity-through-time analyses were highly sensitive to different
 phylogenetic hypotheses, suggesting the description of overall patterns
 among distinct trees. For crocodylomorphs, most results agree in an early
 peak during the Early Jurassic and another in the middle of the
 Cretaceous, followed by nearly continuous decline until today. Since only
 crown-group members survived through the Cenozoic, this decrease in
 disparity was likely the result of habitat loss, which narrowed down the
 range of crocodylomorph lifestyles.
description: Appendix
 ASupplementary methods
 and results.Appendix
 BList
 of all specimens sampled, including specimen number, group, lifestyle and
 source of information for landmark digitisation.Appendix
 CLandmark dataset (in
 .tps format), phylogenetic trees (in .tre format), MrBayes command for FBD
 tip-dating (in .nex format), and R script with geometric morphometric,
 disparity, SURFACE and bayou analyses.Appendix
 DPlots (in .pdf) with all
 results of disparity-trough-time analyses.Appendix
 EPlots (in .pdf) with all
 bayou and SURFACE results.
DOI: 10.5061/dryad.v077p80
title: Data from: A genome‐wide search for local adaptation in a terrestrial‐breeding frog reveals vulnerability to climate change

description: Terrestrial‐breeding amphibians are likely to be vulnerable to warming and
 drying climates, as their embryos require consistent moisture for
 successful development. Adaptation to environmental change will depend on
 sufficient genetic variation existing within or between connected
 populations. Here, we use Single Nucleotide Polymorphism (SNP) data to
 investigate genome‐wide patterns in genetic diversity, gene flow and local
 adaptation in a terrestrial‐breeding frog (Pseudophryne guentheri) subject
 to a rapidly drying climate and recent habitat fragmentation. The species
 was sampled across 12 central and range‐edge populations (192 samples),
 and strong genetic structure was apparent, as were high inbreeding
 coefficients. Populations showed differences in genetic diversity, and one
 population lost significant genetic diversity in a decade. More than 500
 SNP loci were putatively under directional selection, and 413 of these
 loci were correlated with environmental variables such as temperature,
 rainfall, evaporation and soil moisture. One locus showed homology to a
 gene involved in the activation of maturation in Xenopus oocytes, which
 may facilitate rapid development of embryos in drier climates. The low
 genetic diversity, strong population structuring and presence of local
 adaptation revealed in this study shows why management strategies such as
 targeted gene flow may be necessary to assist isolated populations to
 adapt to future climates.
description: Pseudophryne guentheri
 SNP and environmental dataThe file contains Single
 Nucleotide Polymorphism (SNP) data for each individual from each
 population studied. The average rainfall, soil moisture, temperature and
 evaporation for each study site, calculated over a 37 year period
 (1980-2017) are also provided.Pseudophryne guentheri
 only.xlsxSympatric and novel
 species SNP dataThe file contains Single
 Nucleotide Polymorphism (SNP) data for each individual from the sympatric
 species (Pseudophryne occidentalis) and the novel species
 studied.Sympatric and novel
 species.xlsx