cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pjxbdy
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tetramolopium klossii (S.Moore) Mattf."
 ]
}

 The dataset includes 117 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010937-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.769fy8
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Dryaderces pearsoni (Gaige, 1929)"
 ]
}

 The dataset includes 42 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038911-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.1vvnkv
title: Occurrence Download

description: A dataset containing 774 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Iberolacerta monticola (Boulenger, 1905)"
 ]
}

 The dataset includes 774 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010937-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fadk3c
title: Occurrence Download

description: A dataset containing 1383 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Ranoidea platycephala (Günther, 1873)"
 ]
}

 The dataset includes 1383 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003883-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ju96b9
title: Occurrence Download

description: A dataset containing 272 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Caragana halodendron (Pall.) Dum.Cours."
 ]
}

 The dataset includes 272 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049596-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9zumf
title: Occurrence Download

description: A dataset containing 22 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium oligopolium Johanss."
 ]
}

 The dataset includes 22 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025804-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.flrwr9
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Plasm bearing foraminifera counts of multinet POS247/2_MSN1375"
 ]
}

 The dataset includes 79 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010937-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dbzrha
title: Occurrence Download

description: A dataset containing 379 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Magnolia sargentiana Rehder & E.H.Wilson"
 ]
}

 The dataset includes 379 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021705-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkcv10
title: Occurrence Download

description: A dataset containing 330046 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Broedvogels - Atlas of the breeding birds in Flanders 2000-2002"
 ]
}

 The dataset includes 330046 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010937-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26frff
title: Occurrence Download

description: A dataset containing 893 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acropora pulchra (Brook, 1891)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 893 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038920-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nvpjdc
title: Occurrence Download

description: A dataset containing 937 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hieracium dissimile Lindeb. ex Elfstr."
 ]
}

 The dataset includes 937 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025793-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hzkalw
title: Occurrence Download

description: A dataset containing 29323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Polystichum aculeatum (L.) Roth",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 29323 records from 212 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010937-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ege9a5
title: Occurrence Download

description: A dataset containing 27948 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "Geometry POLYGON((-100.551 36.917,-71.79 36.917,-71.79 49.612,-100.551 49.612,-100.551 36.917))",
 "Year is greater than or equal to 1970",
 "RecordedBy is one of (LMM897, LR Johnson, Laird o' Grimhold, Lake Hiawatha, Lance Caldwell, Landon Marshall, Lane Keller, Lara Gibson, Larry Chen, Larry Clarfeld, Larry Jensen, Larry Scacchetti, Laura, Laura H, Laura Holloway, Laura J. Costello, Laura Rainbow Dragon, Laura Timms, Laurel J. Ramseyer, Lauren, Lauren Hallden, Lauren K, Leafitfornature, Leah Fulton, Leah McMillion, Leanne Lentz, Lee Cumming, Len Manning, Leora Fitz, Lesley Baker)",
 "TaxonKey is Animalia",
 {
 "not" : {
 "TaxonKey" : [
 "is Chordata"
 ]
 }
 }
 ]
}

 The dataset includes 27948 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004110-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6r6pqw
title: Occurrence Download

description: A dataset containing 235 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Kaiwarinus equula (Temminck & Schlegel, 1844)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 235 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004111-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7fqx3c
title: Occurrence Download

description: A dataset containing 25807 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "Geometry POLYGON((-100.551 36.917,-71.79 36.917,-71.79 49.612,-100.551 49.612,-100.551 36.917))",
 "Year is greater than or equal to 1970",
 "RecordedBy is one of (LeslieMc, Levana Taylor, Levi smith, Levin Brandt, Lewis Page, Liam Ehrman, Liam O, Liam Pentangelo, Liam Thorne, Lila Schwarzell, Lily, Linda, Lindsey Broadhead, Lindsey G., Link Davis, Lisa Edwards, Lisa Kerr, Lisa Wiencek Gerbec, Lissa Deslandes, Liz, Liz T, Lizzy Cramer, Loopy30, Lorna & David, Lorraine Briddon, Louis Burns, Lowell I., Lucas Beaver, Lucas Schrader, Lucina Brown)",
 "TaxonKey is Animalia",
 {
 "not" : {
 "TaxonKey" : [
 "is Chordata"
 ]
 }
 }
 ]
}

 The dataset includes 25807 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004112-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7jm4r
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caranx equula Temminck & Schlegel, 1844",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004113-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6pzgmh
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Cnestus mutilatus Dole & Cognato, 2010"
 ]
}

 The dataset includes 87 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004114-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bqqdpf
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Xylosandrus mutilatus Wood & Bright, 1992"
 ]
}

 The dataset includes 68 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004115-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cja8tk
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "SpeciesKey" : [
 "is Xylosandrus mutilatus Wood & Bright, 1992"
 ]
}

 The dataset includes 68 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004116-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.edcgqu
title: Occurrence Download

description: A dataset containing 162 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation)",
 "Geometry POLYGON((112.41823 45.65106,174.31327 45.65106,174.31327 66.68616,120.83227 60.86549,110.91984 59.82814,108.90278 54.98719,112.41823 45.65106))",
 "TaxonKey is Pulsatilla ajanensis Regel & Tiling"
 ]
}

 The dataset includes 162 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004118-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sdu7cp
title: Occurrence Download

description: A dataset containing 11867 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "Geometry POLYGON((-100.551 36.917,-71.79 36.917,-71.79 49.612,-100.551 49.612,-100.551 36.917))",
 "Year is greater than or equal to 1970",
 "RecordedBy is one of (Luka S. (someplant), Luke Armstrong, Luke Garrigus, Luke Miller, Luke Wildfire, Luna or Moth, Lyla R. Meader, Lyra Brennan, Lyrae, M. Ashton, MC Barnhart, MMac, MRiedman, MTU Center for Science and Environmental Outreach, M_Milks, MaLisa Spring, Mackenzie, Maddy Laws, Maddy Parker, Madeleine Kerr, Madi Reynolds, Maeve and Joey Coker, Maggie, Maggie Dombroski, Maggie McMillin, Makena, Maleen Mund, Mallory F, Manoli Strecker, Marcus Rossberg)",
 "TaxonKey is Animalia",
 {
 "not" : {
 "TaxonKey" : [
 "is Chordata"
 ]
 }
 }
 ]
}

 The dataset includes 11867 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004117-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dnyure
title: Occurrence Download

description: A dataset containing 288 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zenopsis nebulosa (Temminck & Schlegel, 1845)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 288 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004119-250123221155621/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5j2gp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Zeus nebulosus Temminck & Schlegel, 1845",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004121-250123221155621/datasets/export for details.
DOI: 10.6084/m9.figshare.19542371
title: WIPI2 positively regulates mitophagy by promoting mitochondrial recruitment of VCP

description: The mammalian Atg18 ortholog WIPI2 is a key regulator of LC3 lipidation to promote autophagosome biogenesis during nonselective macroautophagy, while its functions in selective autophagy such as mitophagy remain largely unexplored. In this study, we explored the role of WIPI2 in PINK1-PRKN/parkin-mediated mitophagy. First, we found that WIPI2 is recruited to damaged mitochondria upon mitophagy induction. Second, loss of <i>WIPI2</i> impedes mitochondrial damaging agents-induced mitophagy. Third, at molecular level, WIPI2 binds to and promotes AAA-ATPase VCP/p97 (valosin containing protein) to damaged mitochondria; and <i>WIPI2</i> depletion blunts the recruitment of VCP to damaged mitochondria, leading to reduction in degradation of outer mitochondrial membrane (OMM) proteins and mitophagy. Finally, WIPI2 is implicated in cell fate decision as cells deficient in WIPI2 are largely resistant to cell death induced by mitochondrial damage. In summary, our study reveals a critical regulatory role of WIPI2 in mitochondrial recruitment of VCP to promote OMM protein degradation and eventual mitophagy. <b>Abbreviations:</b> ATG, autophagy related; CALCOCO2/NDP52, calcium binding and coiled-coil domain 2; CCCP, carbonyl cyanide chlorophenylhydrazone; CYCS, cytochrome c, somatic; HSPD1/HSP60, heat shock protein family D (Hsp60) member 1; IMM, inner mitochondrial membrane; MAP1LC3/LC3, microtubule associated protein 1 light chain 3; NPLOC4, NPL4 homolog, ubiquitin recognition factor; OMM, outer mitochondrial membrane; OPTN, optineurin; PtdIns3P, phosphatidylinositol-3-phosphate; PINK1, PTEN induced kinase 1; PRKN/Parkin, parkin RBR E3 ubiquitin protein ligase; UBXN6/UBXD1, UBX domain protein 6; UFD1, ubiquitin recognition factor in ER associated degradation 1; VCP/p97, valosin containing protein; WIPI2, WD repeat domain, phosphoinositide interacting 2
DOI: 10.6084/m9.figshare.19337395
title: KAT7-mediated CANX (calnexin) crotonylation regulates leucine-stimulated MTORC1 activity

description: Amino acids play crucial roles in the MTOR (mechanistic target of rapamycin kinase) complex 1 (MTORC1) pathway. However, the underlying mechanisms are not fully understood. Here, we establish a cell-free system to mimic the activation of MTORC1, by which we identify CANX (calnexin) as an essential regulator for leucine-stimulated MTORC1 pathway. CANX translocates to lysosomes after leucine deprivation, and its loss of function renders either the MTORC1 activity or the lysosomal translocation of MTOR insensitive to leucine deprivation. We further find that CANX binds to LAMP2 (lysosomal associated membrane protein 2), and LAMP2 is required for leucine deprivation-induced CANX interaction with the Ragulator to inhibit Ragulator activity toward RRAG GTPases. Moreover, leucine deprivation promotes the lysine (K) 525 crotonylation of CANX, which is another essential condition for the lysosomal translocation of CANX. Finally, we find that KAT7 (lysine acetyltransferase 7) mediates the K525 crotonylation of CANX. Loss of KAT7 renders the MTORC1 insensitivity to leucine deprivation. Our findings provide new insights for the regulatory mechanism of the leucine-stimulated MTORC1 pathway. <b>Abbreviations:</b> CALR: calreticulin; CANX: calnexin; CLF: crude lysosome fraction; EIF4EBP1: eukaryotic translation initiation factor 4E binding protein 1; ER: endoplasmic reticulum; GST: glutathione S-transferase; HA: hemagglutinin; HEK293T: human embryonic kidney-293T; KAT7: lysine acetyltransferase 7; Kcr; lysine crotonylation; KO: knockout; LAMP2: lysosomal associated membrane protein 2; LAMTOR/Ragulator: late endosomal/lysosomal adaptor: MAPK and MTOR activator; MAP1LC3B: microtubule associated protein 1 light chain 3 beta; MTOR: mechanistic target of rapamycin kinase; PDI: protein disulfide isomerase; PTM: post-translational modification; RPS6KB1/p70S6 kinase 1: ribosomal protein S6 kinase B1; RPTOR: regulatory associated protein of MTOR complex 1; SESN2: sestrin 2; TMEM192: transmembrane protein 192; ULK1: unc-51 like autophagy activating kinase 1.
DOI: 10.6084/m9.figshare.19337395.v1
title: KAT7-mediated CANX (calnexin) crotonylation regulates leucine-stimulated MTORC1 activity

description: Amino acids play crucial roles in the MTOR (mechanistic target of rapamycin kinase) complex 1 (MTORC1) pathway. However, the underlying mechanisms are not fully understood. Here, we establish a cell-free system to mimic the activation of MTORC1, by which we identify CANX (calnexin) as an essential regulator for leucine-stimulated MTORC1 pathway. CANX translocates to lysosomes after leucine deprivation, and its loss of function renders either the MTORC1 activity or the lysosomal translocation of MTOR insensitive to leucine deprivation. We further find that CANX binds to LAMP2 (lysosomal associated membrane protein 2), and LAMP2 is required for leucine deprivation-induced CANX interaction with the Ragulator to inhibit Ragulator activity toward RRAG GTPases. Moreover, leucine deprivation promotes the lysine (K) 525 crotonylation of CANX, which is another essential condition for the lysosomal translocation of CANX. Finally, we find that KAT7 (lysine acetyltransferase 7) mediates the K525 crotonylation of CANX. Loss of KAT7 renders the MTORC1 insensitivity to leucine deprivation. Our findings provide new insights for the regulatory mechanism of the leucine-stimulated MTORC1 pathway. <b>Abbreviations:</b> CALR: calreticulin; CANX: calnexin; CLF: crude lysosome fraction; EIF4EBP1: eukaryotic translation initiation factor 4E binding protein 1; ER: endoplasmic reticulum; GST: glutathione S-transferase; HA: hemagglutinin; HEK293T: human embryonic kidney-293T; KAT7: lysine acetyltransferase 7; Kcr; lysine crotonylation; KO: knockout; LAMP2: lysosomal associated membrane protein 2; LAMTOR/Ragulator: late endosomal/lysosomal adaptor: MAPK and MTOR activator; MAP1LC3B: microtubule associated protein 1 light chain 3 beta; MTOR: mechanistic target of rapamycin kinase; PDI: protein disulfide isomerase; PTM: post-translational modification; RPS6KB1/p70S6 kinase 1: ribosomal protein S6 kinase B1; RPTOR: regulatory associated protein of MTOR complex 1; SESN2: sestrin 2; TMEM192: transmembrane protein 192; ULK1: unc-51 like autophagy activating kinase 1.
DOI: 10.6084/m9.figshare.19542371.v1
title: WIPI2 positively regulates mitophagy by promoting mitochondrial recruitment of VCP

description: The mammalian Atg18 ortholog WIPI2 is a key regulator of LC3 lipidation to promote autophagosome biogenesis during nonselective macroautophagy, while its functions in selective autophagy such as mitophagy remain largely unexplored. In this study, we explored the role of WIPI2 in PINK1-PRKN/parkin-mediated mitophagy. First, we found that WIPI2 is recruited to damaged mitochondria upon mitophagy induction. Second, loss of <i>WIPI2</i> impedes mitochondrial damaging agents-induced mitophagy. Third, at molecular level, WIPI2 binds to and promotes AAA-ATPase VCP/p97 (valosin containing protein) to damaged mitochondria; and <i>WIPI2</i> depletion blunts the recruitment of VCP to damaged mitochondria, leading to reduction in degradation of outer mitochondrial membrane (OMM) proteins and mitophagy. Finally, WIPI2 is implicated in cell fate decision as cells deficient in WIPI2 are largely resistant to cell death induced by mitochondrial damage. In summary, our study reveals a critical regulatory role of WIPI2 in mitochondrial recruitment of VCP to promote OMM protein degradation and eventual mitophagy. <b>Abbreviations:</b> ATG, autophagy related; CALCOCO2/NDP52, calcium binding and coiled-coil domain 2; CCCP, carbonyl cyanide chlorophenylhydrazone; CYCS, cytochrome c, somatic; HSPD1/HSP60, heat shock protein family D (Hsp60) member 1; IMM, inner mitochondrial membrane; MAP1LC3/LC3, microtubule associated protein 1 light chain 3; NPLOC4, NPL4 homolog, ubiquitin recognition factor; OMM, outer mitochondrial membrane; OPTN, optineurin; PtdIns3P, phosphatidylinositol-3-phosphate; PINK1, PTEN induced kinase 1; PRKN/Parkin, parkin RBR E3 ubiquitin protein ligase; UBXN6/UBXD1, UBX domain protein 6; UFD1, ubiquitin recognition factor in ER associated degradation 1; VCP/p97, valosin containing protein; WIPI2, WD repeat domain, phosphoinositide interacting 2