cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.54cd3.1/1.1
title: Local land use intensity index

description: Local land use intensity for each study plot, published by Blüthgen, N., Dormann, C.F., Prati, D., Klaus, V.H., Kleinebecker, T., Holzel, N., Alt, F., Boch, S., Gockel, S., Hemp, A., Muller, J., Nieschulze, J., Renner, S.C., Schoning, I., Schumacher, U., Socher, S.A., Wells, K., Birkhofer, K., Buscot, F., Oelmann, Y., Rothenwohrer, C., Scherber, C., Tscharntke, T., Weiner, C. N., Fischer, M., Kalko, E. K. V., Linsenmair, K.E., Schulze, E.D. & Weisser, W.W. (2012) A quantitative index of land-use intensity in grasslands: Integrating mowing, grazing and fertilization. Basic and Applied Ecology, 13, 207–220.
DOI: 10.5061/dryad.54cd3.1/2.1
title: Butterfly abundance data

description: Butterfly abundance data; see Börschig, C., Klein, A.M., von Wehrden, H. & Krauss, J. (2013) Traits of butterfly communities change from specialist to generalist characteristics with increasing land-use intensity. Basic and Applied Ecology, 14, 547–554 for more details.
DOI: 10.5061/dryad.54cd3.1/3.1
title: Traits for butterfly species

description: Traits for butterfly species (larval-feeding breath, male forewing length and migratory tendency) were compiled from: Higgins, L.G. & Riley, N.D. (1970) A field guide to the butterflies of Britain & Europe, 1st edn. Collins, London; Koch, M. (1991) Schmetterlinge, 3rd edn. Neuman Verlag Radebeul, Germany; Settele, J., Feldmann, R. & Reinhardt, R. (1999) Die Tagfalter Deutschlands, 1st edn. Eugen Stuttgart: Ulmer Verlag, Germany; Settele, J., Steiner, R., Reinhardt, R., Feldmann, R. & Herrmann, G. (2009) Schmetterlinge. Die Tagfalter Deutschlands. 2nd edn. Stuttgart: Ulmer Verlag, Germany.
DOI: 10.5061/dryad.54cd3.2
title: Data from: Configurational landscape heterogeneity shapes functional community composition of grassland butterflies
DOI: 10.5061/dryad.54cd3.2/1.2
title: Local land use intensity index

description: Local land use intensity for each study plot, published by Blüthgen, N., Dormann, C.F., Prati, D., Klaus, V.H., Kleinebecker, T., Holzel, N., Alt, F., Boch, S., Gockel, S., Hemp, A., Muller, J., Nieschulze, J., Renner, S.C., Schoning, I., Schumacher, U., Socher, S.A., Wells, K., Birkhofer, K., Buscot, F., Oelmann, Y., Rothenwohrer, C., Scherber, C., Tscharntke, T., Weiner, C. N., Fischer, M., Kalko, E. K. V., Linsenmair, K.E., Schulze, E.D. & Weisser, W.W. (2012) A quantitative index of land-use intensity in grasslands: Integrating mowing, grazing and fertilization. Basic and Applied Ecology, 13, 207–220.
DOI: 10.5061/dryad.54cd3.2/2.2
title: Butterfly abundance data

description: Butterfly abundance data; see Börschig, C., Klein, A.M., von Wehrden, H. & Krauss, J. (2013) Traits of butterfly communities change from specialist to generalist characteristics with increasing land-use intensity. Basic and Applied Ecology, 14, 547–554 for more details.
DOI: 10.5061/dryad.54cd3.2/3.2
title: Traits for butterfly species

description: Traits for butterfly species (larval-feeding breath, male forewing length and migratory tendency) were compiled from: Higgins, L.G. & Riley, N.D. (1970) A field guide to the butterflies of Britain & Europe, 1st edn. Collins, London; Koch, M. (1991) Schmetterlinge, 3rd edn. Neuman Verlag Radebeul, Germany; Settele, J., Feldmann, R. & Reinhardt, R. (1999) Die Tagfalter Deutschlands, 1st edn. Eugen Stuttgart: Ulmer Verlag, Germany; Settele, J., Steiner, R., Reinhardt, R., Feldmann, R. & Herrmann, G. (2009) Schmetterlinge. Die Tagfalter Deutschlands. 2nd edn. Stuttgart: Ulmer Verlag, Germany.
DOI: 10.5061/dryad.54cd3.2/4.2
title: Coordinates of study sites

description: The file 'Perovic_et_al_degraded_site_coordinates.xlsx' was created to replace the file 'coordinates.csv' in the original version of 'Data from: Configurational landscape heterogeneity shapes functional community composition of grassland butterflies'.  The original file 'coordinates.csv' was removed to protect the privacy of private land owners in accordance with regulations of the Exploratories project (http://www.biodiversity-exploratories.de/).  Original coordinates were  obscured by setting the last 3 digits to 0 which will lead to a precision of 1000 m. This information is also included in the README file.
DOI: 10.5061/dryad.54cd3.2/5.2
title: Landscape metrics

description: The Shannon diversity index of land cover types (SHDI) and the mean of the perimeter to area ratio of patches within the landscape (PAR). For more details see: Steckel, J., Westphal, C., Peters, M.K., Bellach, M., Rothenwoehrer, C., Erasmi, S., Scherber, C., Tscharntke, T. & Steffan-Dwenter, S. (2014) Landscape composition and configuration differently affect trap-nesting bees, wasps and their antagonists. Biological Conservation, 172, 56–64.
DOI: 10.5061/dryad.73kq1/1
title: activity
DOI: 10.5061/dryad.73kq1/2
title: GCMS report
DOI: 10.5061/dryad.73kq1/3
title: r script
DOI: 10.5061/dryad.73kq1/4
title: daily rhythm2
DOI: 10.5061/dryad.73kq1/5
title: daily rhythm2dayonly
DOI: 10.5061/dryad.73kq1/6
title: data
DOI: 10.5061/dryad.73kq1/7
title: pachy.hardness
DOI: 10.5061/dryad.73kq1/8
title: hardness.bodylength.remove.hard
DOI: 10.5061/dryad.7vd0160/1
title: All GS-like protein sequences from 11 nematode species.

description: 180 GS-like protein sequences from 11 nematode species across the phylum. Deduced amino acid sequences from genome and/or transcriptome assemblies.
DOI: 10.5061/dryad.7vd0160/2
title: All GS-like nucleotide sequences from 10 nematode species

description: 176 GS-like nucleotide sequences from 10 nematode species across the phylum. Sequences are not available for M. incognita. sequences encode the entire transcript, and in some cases 5' and/or 3' UTRs
DOI: 10.5061/dryad.8m5v4/5
title: Supporting information - ErmineJ Functional enrichment results file

description: Supporting information - ErmineJ Functional enrichment results file
DOI: 10.5061/dryad.8p6m07g/2
title: Candidate regions of parallel selection on admixture variation

description: bed file indicating the locations of the candidate regions of parallel selection on admixture variation
DOI: 10.5061/dryad.ch234/1
title: Appendix S1

description: Total taxa sampling. Grey cells point out the apomorphy for which that taxon was chosen. *presence of probably unfunctional gastralia; NEI: not enough information available.
DOI: 10.5061/dryad.ch234/2
title: Appendix S2

description: Taxa concerning which information was searched, with references. (?): in different category following different measurement (Op or Me, see in the text); NEI: not enough information available; NA: not applicable or useless character.
DOI: 10.5061/dryad.h8n7p/1
title: finaldata_longevity_sociality

description: Final data set used for analyses.
DOI: 10.5061/dryad.h8n7p/2
title: Rcode_finalanalysis

description: Final R code to conduct longevity analysis
DOI: 10.5061/dryad.hm813/1
title: Microsorum_x_tohieaense_BI_postdist

description: This zip file contains posterior distributions of model parameters and trees produced by MrBayes during phylogenetic analysis for Nitta et al. Microsorum × tohieaense (Polypodiaceae), a new hybrid fern from French Polynesia, with implications for the taxonomy of Microsorum.
DOI: 10.5061/dryad.hm813/3
title: Microsorum_x_tohieaense_dryad_data

description: This is a zipped archive containing data associated with Nitta et al. Microsorum × tohieaense (Polypodiaceae), a new hybrid fern from French Polynesia, with implications for the taxonomy of Microsorum. Please see the README file in each directory for a description of the data. Note that a portion of the data (posterior distributions of model parameters and trees produced during MrBayes runs) has been provided separately due its large size (ca. 2 gb).
DOI: 10.5061/dryad.j17pm.1
title: Data from: A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales
DOI: 10.5061/dryad.j17pm.1/1.1
title: Kriebel_Khabbazian_Sytsma_2017

description: This data package includes the files needed to reproduce the analyses of the following paper: Kriebel, R., Khabbazian, M., and K. J. Sytsma. A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales
DOI: 10.5061/dryad.j17pm.2
title: Data from: A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales
DOI: 10.5061/dryad.j17pm.2/1.2
title: Kriebel_Khabbazian_Sytsma_2017

description: This data package includes the files needed to reproduce the analyses of the following paper: Kriebel, R., Khabbazian, M., and K. J. Sytsma. A continuous morphological approach to study the evolution of pollen in a phylogenetic context: an example with the order Myrtales
DOI: 10.5061/dryad.j4h65/1
title: Supplementary_files_Harvey_et_al_MEC-17-0821

description: This zip file contains 10 supplementary files associated to Harvey et al. "Life-stage associated remodeling of lipid metabolism regulation in Atlantic salmon".
DOI: 10.5061/dryad.kr17k/1
title: in vivo calcium imaging data recorded in dorsal striatum of a freely behaving mouse

description: This data correspond to Figure 5 in our manuscript.
DOI: 10.5061/dryad.mb88mh2/1
title: Keppner et al_Data_Dryad

description: Excel file with three spreadsheets. The first spreadsheet contains data on male and female nutrional status, pronotum width, body mass at different time points, carcass mass at different time points, number of larvae raised, average larval weight, total brood mass, male care duration. The second spreadsheet contains the weight of each single larva of the first brood. The third spreadsheet contains the weight of each single larva of the second brood.
DOI: 10.5061/dryad.p89m3/1
title: R code – Function to recognize recent diversification centers and ancient preserving centers

description: The R script contains a function to recognize recent diversification centers and ancient preserving centers.
DOI: 10.5061/dryad.p89m3/2
title: Dated_phylogeny_for_Chinese_angiosperms

description: The tree file is a dated phylogeny for Chinese angiosperms calculated in treePL. The data set includes 5,864 species representing 2,665 genera native to China (ca. 92% of angiosperm genera in China).
DOI: 10.5061/dryad.q554f1k/1
title: Interaction data between ants, aphids and wasps in riparian habitats in Southern California

description: These data document networks of interactions among aphid-tending ants, ant-tended aphids, and aphid-attacking parasitoid wasps differ between 12 spatially paired riparian study sites with and without the introduced Argentine ant (Linepithema humile) in Southern California. To resolve challenges in species identification, we used DNA barcoding to identify aphids and screen for parasitoid wasps (developing inside their aphid hosts) from 170 aphid aggregations sampled on arroyo willow (Salix lasiolepis).
DOI: 10.5061/dryad.rk744/1
title: 62166_Reference_dRAD_loci

description: Fasta file containing 62166 Salmo trutta dRAD loci (or contigs) sequences which were used as a reference for the alignment of all the samples using bowtie2.
DOI: 10.5061/dryad.rk744/2
title: Genotype file

description: A total of 12143 brown trout (Salmo trutta) SNPs are provided in Illumina format with first four columns represent Name ("dRAD locus id"-"position of SNP in dRAD locus"), chromosome (in Salmo salar), position in chromosome and strand (orientation of mapped dRAD locus on the S. salar chromosome). Other columns represent samples and each row represent a SNP. The file is required by the R script SNPFiltering_LD_AssociationAnalysis.R which will filter it to 7661 SNPs.
DOI: 10.5061/dryad.rk744/3
title: Colony_Input

description: The zip file contains following two files which act as input for COLONY(version 2.0.6.1) for parentage and sibship inference run. Details about input file preparation and parameters for COLONY run are given in the README file.
DOI: 10.5061/dryad.rk744/4
title: R Scripts For Random Forest Analysis

description: R code files for the Random Forest analysis performed in this study.
DOI: 10.5061/dryad.vv5347p/1
title: Genotype data for Carroll et al

description: Microsatellite genotype data for southern right whales in Carroll et al 2018
DOI: 10.17632/2m27d8vjty.1
title: Data for: Hedging with Trees: Tail-Hedge Discounting of Long-Term Forestry Returns

description: Stumpage prices, Sweden 1909 - 2012, current prices and fixed prices (CPI deflated).
DOI: 10.17632/f8szy2bghb.1
title: Data from: Dynamics and Ultradian Structure of Human Sleep in Real Life. Winnebeck et al.

description: Data and supplemental figures from the publication "Dynamics and Ultradian Structure of Human Sleep in Real Life" by EC Winnebeck, D Fischer, T Leise and T Roenneberg
DOI: 10.17632/hpj6ypcxgy.1
title: Data for: Analysis of respiratory movements in a mouse model of late Parkinson's disease submitted to stress

description: Parkinson mouse
DOI: 10.17632/t29kwk8rg3.1
title: Data for: Hydroxypyridinone-benzofuran hybrids with potential protective roles for Alzheimer´s disease therapy

description: Revised paper on Bio-inorganic Chemistry
DOI: 10.17632/t29kwk8rg3.2
title: Data for: Hydroxypyridinone-benzofuran hybrids with potential protective roles for Alzheimer´s disease therapy

description: Revised paper on Bio-inorganic Chemistry
DOI: 10.5061/dryad.19cf1c2/1
title: Compressed data archive file

description: This compressed archive includes multiple other files including data files (in .csv format for tabular data) and the R code for all analyses (a series of .R scripts). Specific descriptions of each file are supplied in the ReadMe.txt file.
DOI: 10.5061/dryad.2c8p1/1
title: Duffield_AgeDependent_TerminalInvestment_Calling

description: Calling effort of young and old male crickets following treatment from an increasing spectrum of infection cue intensity using heat-killed bacteria.
DOI: 10.5061/dryad.2c8p1/2
title: Duffield_AgeDependent_TerminalInvestment_Hemocyte

description: Preliminary data; hemocyte counts of hemolymph collected from young and old male crickets following treatment from an increasing spectrum of infection cue intensity using heat-killed bacteria.
DOI: 10.5061/dryad.2c8p1/3
title: Duffield_AgeDependent_TerminalInvestment_Zones

description: Antibacterial activity of hemolymph collected from young and old male crickets following treatment from an increasing spectrum of infection cue intensity using heat-killed bacteria.
DOI: 10.5061/dryad.2hj343f/2
title: Normalized Transformed Expression Count Data

description: Normalized, transformed expression count data of Medicago truncatula and mycorrhizal fungi is given as an R data frame where the columns denote different genes and rows denote different samples. This data is used for downstream differential coexpression analyses.
DOI: 10.5061/dryad.2hj343f/3
title: Normalization and Transformation of Raw Count Data Script

description: Raw count data is transformed and normalized with available R packages and RNA-Seq best practices.
DOI: 10.5061/dryad.2hj343f/4
title: Raw_Count_Data_Mycorrhizal_Fungi

description: Raw count data from HtSeq for mycorrhizal fungi reads are later transformed and normalized for use in differential coexpression analysis. 'R+' indicates that the sample was obtained from a plant grown in the presence of both mycorrhizal fungi and rhizobia. 'R-' indicates that the sample was obtained from a plant grown only in the presence of mycorrhizal fungi.
DOI: 10.5061/dryad.2hj343f/5
title: Raw Count Data Medicago truncatula

description: Raw count data from HtSeq for Medicago truncatula reads are later transformed and normalized for use in differential coexpression analysis. 'M+R+' indicates that the sample was obtained from a plant grown in the presence of both mycorrhizal fungi and rhizobia. 'M+R-' indicates that the sample was obtained from a plant grown only in the presence of mycorrhizal fungi.
'M-R+' indicates that the sample was obtained from a plant grown only in the presence of rhizobia. 'M-R-' indicates that the sample was obtained from a plant grown in a sterile environment.
DOI: 10.5061/dryad.46pk7/3
title: Bean variation catalog relative to the reference genome v2.1

description: Bean variation catalog relative to the reference genome v2.1. See README.txt file for instructions on how to perform different filters of this VCF file using NGSEP
DOI: 10.5061/dryad.46pk7/4
title: GZI index file for the bean variation catalog relative to the reference genome v2.1

description: Index file generated with the bgzip tool for the VCF file having the bean variation catalog (BeanWGS_RefV2_CIAT_UCDAVIS_Q40.vcf.gz)
DOI: 10.5061/dryad.46pk7/5
title: Tabix index for the bean variation catalog aligned to the reference genome v2.1

description: Tabix index for the bean variation catalog aligned to the reference genome v2.1. This file is useful to make quick queries using the tabix tool of htslib (http://www.htslib.org/doc/tabix.html)
DOI: 10.5061/dryad.54cd3.1/5.1
title: Landscape metrics

description: The Shannon diversity index of land cover types (SHDI) and the mean of the perimeter to area ratio of patches within the landscape (PAR). For more details see: Steckel, J., Westphal, C., Peters, M.K., Bellach, M., Rothenwoehrer, C., Erasmi, S., Scherber, C., Tscharntke, T. & Steffan-Dwenter, S. (2014) Landscape composition and configuration differently affect trap-nesting bees, wasps and their antagonists. Biological Conservation, 172, 56–64.
DOI: 10.5061/dryad.561f1/1
title: Data on Ephippiger diurns male call, spermatophore size and immune response
DOI: 10.5061/dryad.60n2m/1
title: the data for preparation process of AAO

description: 1.the data for preparation process of AAO;2.the examples for figuring the estimated of defect numbers;3.the original data for current vs time;4.the regularity parameters.
DOI: 10.5061/dryad.68j14/1
title: SOSP-Test of EAH-Data

description: Data from the song transmission analysis of song sparrow broadcast songs, crystallized soft songs, and warbled soft songs. All data were collected using SigPro 3.25.
DOI: 10.5061/dryad.73kq1/10
title: 160710D-2
DOI: 10.5061/dryad.73kq1/11
title: 160710D-3
DOI: 10.5061/dryad.73kq1/12
title: 160726A-1
DOI: 10.5061/dryad.73kq1/13
title: 160726A-2
DOI: 10.5061/dryad.73kq1/14
title: 160726A-3
DOI: 10.5061/dryad.73kq1/15
title: 160805A-1
DOI: 10.5061/dryad.73kq1/16
title: 160805A-2
DOI: 10.5061/dryad.73kq1/9
title: 160710D-1
DOI: 10.5061/dryad.875j1k8/1
title: BEAST data set

description: Nexus file with concatenated UCE sequences. See ReadMe file to match sample names with species and locality.
DOI: 10.5061/dryad.9987q2k/1
title: Data file including information about experiments

description: A XLS spreadsheet containing information on individual experiments testing responses of Common Nightingale (Luscinia megarhynchos) males in a contact zone with the Thrush Nightingale (Luscinia luscinia) to playback of three types of stimuli: pure conspecific song (LM), pure heterospecific song (LL), and mixed heterospecific song (mix).
DOI: 10.5061/dryad.9987q2k/2
title: Data file including information about experiments

description: A tab-delimited TXT file containing information on individual experiments testing responses of Common Nightingale (Luscinia megarhynchos) males in a contact zone with the Thrush Nightingale (Luscinia luscinia) to playback of three types of stimuli: pure conspecific song (LM), pure heterospecific song (LL), and mixed heterospecific song (mix).
DOI: 10.5061/dryad.dv322/1
title: Anoa mtDNA

description: Fasta files containing Anoa mtDNA data
DOI: 10.5061/dryad.dv322/2
title: Anoa microsatellite

description: TSV files containing Anoa microsatellite data
DOI: 10.5061/dryad.dv322/3
title: Babirusa mtDNA

description: Fasta files containing Babirusa mtDNA data
DOI: 10.5061/dryad.kr17k/2
title: in vivo calcium imaging data recorded in prefrontal cortex of a freely behaving mouse

description: This data corresponds to Figure 6 in our manuscript.
DOI: 10.5061/dryad.kr17k/3
title: in vivo calcium imaging data recorded in BNST of a freely behaving mouse

description: This data corresponds to Figure 8 in our manuscript.
DOI: 10.5061/dryad.kr17k/4
title: in vivo calcium imaging data recorded in ventral hippocampus of a freely behaving mouse

description: This data corresponds to Figure 7 in our manuscript.
DOI: 10.5061/dryad.nm3d3/1
title: tree_species_growth_time_series

description: This file contains growth dynamics for 12 common tree species by size class over 20 years (4-yr time step) in the 50 ha Mudumalai Forest Dynamics Plot.
DOI: 10.5061/dryad.nm3d3/2
title: tree_species_abundance_time_series

description: This file contains 20-yr long (1988-2008) annual abundance dynamics for 12 common tree species (&gt;= 5 cm DBH) in the 50 ha Mudumalai Forest Dynamics Plot (MFDP).
DOI: 10.5061/dryad.nm3d3/3
title: tree_species_mortality_time_series

description: This file contains 20-yr long (1988-2008) annual mortality dynamics for 12 common tree species (&gt;=5 cm DBH) in the 50 ha Mudumalai Forest Dynamics Plot.
DOI: 10.5061/dryad.q6188pm/1
title: Dryad_CharacterizationData

description: The file contains imager characterization data, such as quantum efficiency, fixed pattern noise, concentration detection, filter optical density, filter transmission data.
DOI: 10.5061/dryad.rk744/5
title: SNPFiltering_LD_AssociationAnalysis

description: R code for SNP filtering, LD calculation and association analysis. The code requires 255_genos.txt (genotypes) and 255_phenotypes_genabel.txt(phenotypes) files to filter out 7661 SNPs and perform association and other analyses.
DOI: 10.5061/dryad.rk744/6
title: Random Forest Analysis Required Files

description: This zip file contains files required by Random Forest analysis or for only plotting the results using PLOTRF_FINAL.R.
DOI: 10.5061/dryad.rk744/7
title: Phenotype file

description: This file contains phenotypes of 255 Salmo trutta sampled juveniles.
DOI: 10.5061/dryad.s4cc3/1
title: Genetic data

description: Individual microsatellite data of African buffalo sampled in  Kruger National Park in 1998.
DOI: 10.5061/dryad.s4cc3/2
title: Rainfall data

description: Rainfall data for Kruger National Park, from 19 rainfall stations in the period 1975-1999.
DOI: 10.5061/dryad.t096s.1
title: Data from: Succession of arbuscular mycorrhizal fungi along a 52-year agricultural recultivation chronosequence
DOI: 10.5061/dryad.t096s.1/2.1
title: fastq.part2

description: Raw sequences reads, demultiplexed paired-end fastq files, samples S76-S150
DOI: 10.5061/dryad.t096s.2
title: Data from: Succession of arbuscular mycorrhizal fungi along a 52-year agricultural recultivation chronosequence
DOI: 10.5061/dryad.t096s.2/1.2
title: fastq.part1

description: Raw sequences reads, demultiplexed paired-end fastq files, samples S1-S75
DOI: 10.5061/dryad.t096s.2/2.2
title: fastq.part2

description: Raw sequences reads, demultiplexed paired-end fastq files, samples S76-S150
DOI: 10.5061/dryad.t096s.2/3.2
title: postprocessed_data

description: All post-processed tables used for statistical analyses, including the OTUs contingency table (otu97_table.txt), the metadata associated with each sample (metadata_table.odt), and the idenitifed taxonomy of each OTU (otu97_taxo).
DOI: 10.17632/4thjtfcmcd.1
title: Data for: Increased information and marketing to specific individuals could shift conservation support to less popular species

description: Questions asked in the survey which the paper is based on.
DOI: 10.17632/4thjtfcmcd.2
title: Data for: Increased information and marketing to specific individuals could shift conservation support to less popular species

description: Questions asked in the survey which the paper is based on.