cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/s5v8t53bsw.1
title: 27-color healthy lung flow cytometry dataset

description: Dataset belonging to the publication "Optimized full-spectrum flow cytometry panel for deep immunophenotyping of murine lungs" by Baumann et al.
Files are raw flow cytometry data for a healthy female murine lung, stained with a 27-color antibody panel (see Figure 4 and Supplementary Table 2 in the paper).
The folder ("raw") contains two subfolders, with corresponding reference single stains and lung samples.
In the reference sample folder, the files are either beads or cells, corresponding to what we used for data unmixing in the manuscript.
Additionally, it contains the single AF signatures used for unmixing (AF 5, 13, and 35).
In the samples folder, FS is the fully stained sample. FMO denotes Fluorochrome Minus One controls.
For all questions, please refer to the contact linked in the paper.
DOI: 10.17632/yynb8v9r4v.1
title: Effects of calcium carbonate against fall armyworm Spodoptera frugiperda

description: This study aimed to investigate the lethal and sublethal effects of calcium carbonate against Fall Armyworm Spodoptera frugiperda. Four experiments have been conducted against this insect pest including a direct contact test, no-choice feeding test, choice feeding test, and oviposition test. Observations were conducted on insect mortality, feeding inhibition, larval period, pupal weight, abnormal pupae, and oviposition inhibition.
DOI: 10.17632/8x9nrtmfmv.1
title: Improving actual evapotranspiration estimates through an integrated remote sensing and cutting-edge machine learning approach.

description: This folder contains three subfolders: one with the R code to generate the models, another with the datasets for training and testing used in the work, and the other with the two best models. 
The datasets pertain to current evapotranspiration generated by the Metric model (Allen et al., 2007), along with various predictor variables.
DOI: 10.17632/xyrf4ssn5h.1
title: Transcriptomic and metabolomic responses to varying nutrient conditions in the growing medium reveal new insights into pitcher formation in Nepenthes khasiana

description: Pitchers enable Nepenthes to colonize habitats poor in soil nutrients. So far, pitcher formation in Nepenthes is still a poorly understood biological process. To shed light on the formation of pitchers in Nepenthes, we grew dissected shoot apices of 3-month-old N. khasiana seedlings in Murashige and Skoog (MS) medium of varying strengths, including those lacking N, P and K and those containing 5μM N-1-naphthylphthalamic acid (NPA). Shoots grown in 1 MS or NPA-containing 1/4 MS and 1/8 MS failed to develop pitchers, while pitcher formation is restored when N is removed from 1 MS. Transcriptomic responses to sufficient and deficient nutrient conditions are associated with the enrichment of several defence-related genes, including two JA-mediated defence response genes, WRKY51 and WRKY11, respectively. Our findings suggest that failure to form pitchers is associated with the suppression of JA-signalling pathway whereas the induction of JA-mediated defence responses is linked to pitcher formation in Nepenthes. Further, metabolomic responses to the varying nutrient conditions identify glutamic acid as a key metabolite, accumulating at lower and higher levels in shoots with and without pitchers, respectively. We hypothesize that Nepenthes activates a defence response mechanism, seen in herbivore-damaged Arabidopsis leaves, during pitcher formation under low nutrient conditions.
DOI: 10.17632/xyrf4ssn5h.2
title: Primary metabolites profiling and Mapman functional category enrichment analysis of DEGs

description: Data S1 contains a list of primary metabolites identified in Nepenthes khasiana in response to varying nutrient conditions. Data S2 and S3 contain a list of enriched DEGs.
DOI: 10.17632/xyrf4ssn5h.4
title: Transcriptomic and metabolomic responses to varying nutrient conditions reveal new insights into pitcher formation in Nepenthes khasiana

description: The dataset uploaded here contain (i) annotation results of the assembled transcriptome using UniProt and Mercator databases (Data S1), (ii) a list of primary metabolites identified in N. khasiana in response to varying nutrient conditions (Data S2), (iii) a list of elements detected in soil samples collected from a natural habitat of N. khasiana (Data S3), (iv) DESeq results of the first group of samples comprising 1 MS, 1/4 MS and 1/8 MS (Data S4) and the second group of samples comprising LB, P and R (Data S5), and (v) Mapman functional categories enriched in different clusters of first group of DEGs comprising 1 MS, 1/4 MS and 1/8 MS (Data S6) and second group of DEGs comprising LB, P and R (Data S7).
DOI: 10.17632/xyrf4ssn5h.3
title: Primary metabolites profiling and Mapman functional category enrichment analysis of DEGs

description: Data S1 contains a list of primary metabolites identified in Nepenthes khasiana in response to varying nutrient conditions. Data S2 contains a list of elements detected in soil samples collected on four separate months of 2017 from a natural habitat located at Jaraiñ, Jaintia Hills District, Meghalaya, in which N. khasiana plants grow. Data S2 and S3 contain a list of enriched DEGs.
DOI: 10.17632/vxkg8tz8kh
title: An atomistic survey of shear coupling in asymmetric tilt grain boundaries and interpretation using the disconnections framework

description: This data repository consists of coupling factor and stress data for 244 ATGBs studied. 
It consists of 2 folders : 
Stress Data 
Coupling factor Data
DOI: 10.17632/vxkg8tz8kh.1
title: An atomistic survey of shear coupling in asymmetric tilt grain boundaries and interpretation using the disconnections framework

description: This data repository consists of coupling factor and stress data for 244 ATGBs studied. 
It consists of 2 folders : 
Stress Data 
Coupling factor Data
DOI: 10.17632/7994s3f4pb.1
title: A list of publications applying authigenic 10Be/9Be dating method

description: This dataset aims to provide an exhaustive list of publications that have applied authigenic 10Be/9Be dating in geoscience. Some authors refer to this method as dating using meteoric 10Be. As the method is still in development and the number of applications is relatively low (several dozen), this list is of great benefit to all users. The applications include determining the age of deep marine ferromanganese nodules (the oldest application, in 1982), soils, open marine sediments, lacustrine, glacial, deltaic, and alluvial successions. The list contains full references to publications and information about the type of dated material. Despite the efforts made, the list may possibly miss some overlooked publications. On the other hand, new applications are still being published, and hence, the dataset will be regularly updated.
DOI: 10.17632/rc92h83cwr.1
title: LDHU3_16.1250

description: Protein of unknown function (DUF3184); Leishmania donovani (HU3 strain)
DOI: 10.17632/xj2h9cxnpm.1
title: LDHU3_16.1290

description: Protein of unknown function (DUF3184); Leishmania donovani (HU3 strain)
DOI: 10.17632/b233j77j6h.1
title: The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach (raw data)

description: Solidification is directly determined by multi-fields. Visualization of the flow field, the solute content field, as well as the constitutional undercooling field during the solidification of immiscible Al-Bi alloy, was conducted via X-ray radiography and optical flow approach. The related detailed description and analysis as well as the steps to reproduce were referred to in the paper titled “The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach”.
Here, the solute profile and the optical flow measurements based on the raw radiographs which were recorded during the solidification of immiscible Al-Bi alloy were uploaded, where the unit of the optical flow and solute profile data respectively “m/s” and “× 100 %”. The positive vertical flow velocity (VY) is in the downward direction. The positive horizontal flow velocity (VX) is in the rightward direction.
DOI: 10.17632/2fcyxgk77f.1
title: The exploratory dataset of isotopic composition of different water sources across Kazakhstan.

description: The presented dataset contains results of stable water isotope composition of water samples collected during 2017-2023 across Kazakhstan with one lake sample from Kyrgyzstan (Issyk-kul Lake). The dataset has the oxygen and hydrogen isotopic ratios (δ2H and δ18O) expressed in per mil (‰) after normalization of raw measurements with international accepted reference standards (i.e VSMOW2 and SLAP2) along with measurements error reported as one standard deviation. The dataset (n=399) consist of following water source types: precipitation (n=130) - event precipitation (n=108), monthly cumulative (n=22); surface water (n=175) – rivers (n=69), brooks (n=19), channels (n=7), lakes (n=78), reservoirs (n=2); groundwater (n=85) - shallow groundwater (n=76), artesian (free-flowing) groundwater (n=8), a spring (n=1); tap water (n=9. The Excel spreadsheet containing data has five tabs: 1) Precipitation events; 2) Precipitation monthly; 3) Surface water; 4) Groundwater; 5) Tap water. The tabs have the following columns: Sample no, Sample ID, Sample type, Sample subtype, Event type (for event precipitation), Sample description, Date, Location, Coordinate 1, (Lat N), Coordinate 2, (Lon E), Comment, Measurement method, δ18O, ‰, 1σ (standard deviation for oxygen), δ2H, ‰, 1σ (standard deviation for hydrogen).
DOI: 10.17632/v872mx5g9t.1
title: The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach (processed solute data)

description: Solidification is directly determined by multi-fields. Visualization of the flow field, the solute content field, as well as the constitutional undercooling field during the solidification of immiscible Al-Bi alloy, was conducted via X-ray radiography and optical flow approach. The related detailed description and analysis as well as the steps to reproduce were referred to in the paper titled “The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach”.
Here, the solute profile and the optical flow measurements based on the raw radiographs which were recorded during the solidification of immiscible Al-Bi alloy were uploaded, where the unit of the optical flow and solute profile data respectively “m/s” and “× 100 %”. The positive vertical flow velocity (VY) is in the downward direction. The positive horizontal flow velocity (VX) is in the rightward direction. V is the net velocity.
DOI: 10.17632/vrz4xbr3sd.1
title: LDHU3_16.1310

description: Protein of unknown function (DUF3184); Leishmania donovani (HU3 strain)
DOI: 10.17632/9s4bzpsbwx.1
title: LDHU3_04.0400

description: ADP-ribosylation factor; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.gr5y9p
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Lepidoptera collection (EL) of the Muséum national d'Histoire naturelle (MNHN - Paris)",
 "Geometry POLYGON((47.70568 -11.37307,46.70377 -12.66124,44.12743 -15.09445,44.02008 -18.8874,42.91082 -24.68417,44.84308 -26.33016,48.13507 -25.11356,49.60216 -22.82348,51.74911 -15.34493,49.74529 -11.80246,47.70568 -11.37307))"
 ]
}

 The dataset includes 57 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004276-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/zfkd5f8s6p.1
title: LDHU3_04.0500

description: DOC domain-containing protein; Leishmania donovani (HU3 strain)
DOI: 10.17632/dx5jfdpfrk.1
title: LDHU3_04.0380

description: beta-Fructofuranosidase; Leishmania donovani (HU3 strain)
DOI: 10.57754/fdat.6gfhr-f0k21
title: AJTintext

description: Acceptability Judgment.
Rating study: Order preferences (base or derived order) for 2 adjacent event external and event internal adverbials are compared.
DOI: 10.17632/pbyb46fx96.1
title: LDHU3_04.0210

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/66w8gcsh9m.1
title: LINF_250019400

description: serine/threonine protein phosphatase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/g8t6vfygtt.1
title: Boakye, K. (2019) - TE farm data

description: This research aimed at estimating the technical efficiencies of smallholder pineapple farmers using the Data Envelopment Analysis (DEA) technique. The DEA technique was appropriate because it allowed the researcher to estimate technical efficiency on constant returns assumptions, variable returns assumptions, and further compute the scale efficicincy. The Central Region of Ghana was purposefully selected in this study since it is one of the major pineapple growing areas in Ghana. The sampling process includes 15 smallholder pineapple farmers from the Abura-Asiebu-Kwamankese district, 875 farmers from the Komenda-Edina-Eguafo-Abirem district and 1051 from the Ekumfi district as designated by Ghanaian Department of Agriculture across the Central Region.

The technique on sample size determination for a given population was suggested in Krejcie and Morgan (1970) which was used to delineate the current sample size based on the sampling frame(s). As a result, 320 smallholder pineapple farmers were used. Due to uncertainty and constraints or unavailability of survey respondents, Marc, et al., (2005) advised the rationale for keeping provision of 10% of the sample to reflect the non-responses and errors occurred in the process of data collection.
DOI: 10.17632/d36ftkd93d.1
title: IPC codes "OTHER Circular patents" DOI: 10.1080/09537325.2022.2106206

description: IPC codes underlying your layers in Figure 1 "Other Circular Patents" classification
SOURCE: Portillo-Tarragona, P.; Scarpellini, S.; Marín-Vinuesa, L.M. (2022 online).‘Circular patents’ and dynamic capabilities: new insights for patenting in a circular economy. Technology Analysis & Strategic Management. DOI: 10.1080/09537325.2022.2106206
DOI: 10.17632/kmb858d93x.1
title: LINF_250018300

description: t-Utp4; Leishmania infantum (strain JPCM5)
DOI: 10.17632/495f6c3cs8.1
title: LINF_250019100

description: PRP38 family; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wxy2fkp5w8.1
title: A study of "Super-resolution proximity labeling reveals antiviral protein network and its structural changes against SARS-CoV-2 viral proteins". Lee et al.

description: SARS-CoV-2 replicates in human cells by interacting with host factors following infection. To understand the virus and host interactome, proximity, we introduce a super-resolution proximity labeling (SR-PL) method with “plug and playable” PL enzyme, TurboID-GBP (GFP binding protein) and we apply it for interactome mapping of SARS-CoV-2 ORF3a and M, which generates highly perturbed ER structures. Through SR-PL analysis of the biotinylated interactome, 224 and 272 peptides are robustly identified as ORF3a and M interactomes, respectively. Within the ORF3a interactome, RNF5 co-localizes with ORF3a and generates ubiquitin modifications of ORF3a that can be involved in protein degradation. We also observe that the SARS-CoV-2 infection rate is efficiently reduced by the overexpression of RNF5 in host cells. The interactome data obtains using the SR-PL method are presented in https://sarscov2.spatiomics.org. We hope that our method will contribute to revealing virus–host interactions of other viruses in an efficient manner.
DOI: 10.17632/fmj5vj465h.1
title: Acosta,etal_2024

description: Autocorrelation curves and fits for FCS data in spreadsheet format; time versus intensity data for polymerization data.
DOI: 10.17632/yrkw9jtp38.1
title: LINF_250022200

description: TRAPP complex protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/jg3r4th3vg.1
title: LINF_250023300

description: HORMA domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.14698911
title: 1267_AS3_coursework_01
DOI: 10.5281/zenodo.14698912
title: 1267_AS3_coursework_01
DOI: 10.15468/dl.wttd29
title: Occurrence Download

description: A dataset containing 535 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "TaxonKey is Derris Lour."
 ]
}

 The dataset includes 535 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004277-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/fmj5vj465h.2
title: Acosta,etal_2024

description: Autocorrelation curves and fits for FCS data in spreadsheet format; time versus intensity data for polymerization data.
DOI: 10.15468/dl.adsq7f
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is India",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "IucnRedListCategory is one of (NE, LC, DD, NT, VU, EN, CR, EW, EX)",
 "Month is one of (January, February, March, April, May, June, July, September, August, October, November, December)",
 "TaxonKey is Derris Lour."
 ]
}

 The dataset includes 139 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004278-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/d2wtx28c6x.1
title: ISOTONIC EXERCISE PROVOKES GREATER THERMAL TENDINOUS STRESS THAN ISOMETRIC EXERCISE INDEPENDENT OF PHOTOBIOMODULATION

description: This is an experimental, randomized, single-blind study. A total of 32 healthy, physically active volunteers were randomly assigned to one of two independent groups who performed isometric (GISM, N=16, 8 Males/8 Females) or isotonic (GIST, N=16, 8 Males/8 Females) exercise protocols for the Sural Triceps preceded by the application of real PBM and Sham with a one-week washout. The subjects were evaluated by infrared thermography (IT), isometric muscle strength (IMS), pain and rating of perceived exertion (RPE), before, during and after performing the experimental protocols.
DOI: 10.17632/5mzvrgrhjn.1
title: HDL functionality is dependent on hepatocyte stress defense factors Nrf1 and Nrf2

description: High density lipoproteins (HDL) promote homeostasis and counteract stressful tissue damage that underlie cardiovascular and other diseases by mediating reverse cholesterol transport, reducing inflammation, and abrogating oxidative damage. However, metabolically stressful conditions associated with atherosclerosis can impair these effects. Hepatocytes play a major role in the genesis and maturation of circulating HDL, and liver stress elicits marked regulatory changes to circulating HDL abundance and composition, which affect its functionality. The mechanisms linking liver stress to HDL function are incompletely understood. In this study, we sought to determine whether stress defending transcription factors nuclear factor erythroid 2 related factor-1 (Nrf1) and -2 (Nrf2) promote hepatocyte production of functional HDL. Using genetically engineered mice briefly fed a mild metabolically stressful diet, we investigated the effect of hepatocyte-specific deletion of Nrf1, Nrf2, or both on circulating HDL cholesterol, protein composition, and function. Combined deletion, but not single gene deletion, reduced HDL cholesterol and apolipoprotein A1 levels as well as the capacity of HDL to accept cholesterol undergoing efflux from cultured macrophages and to counteract tumor necrosis factor -induced inflammatory effect on cultured endothelial cells. This coincided with substantial alteration to the HDL proteome, which correlated with liver gene expression profiles of corresponding proteins. Thus, our findings show complementary actions by hepatocyte Nrf1 and Nrf2 play a role in shaping HDL abundance and composition to promote production of functionally viable HDL. Consequently, our study illuminates the possibility that enhancing stress defense programming in the liver may improve atheroprotective and perhaps other health promoting actions of HDL.
DOI: 10.17632/hc7f9hnhxy.1
title: Dataset of images for visual and non-visual analyses of light and colour applications in architecture

description: This repository contains a dataset of images obtained from reduced-scale models. The main objective of this dataset was to study the visual and non-visual impact on occupants of architectural elements including lighting design strategies and colour applications. The reduced-scale models represented a generic room at 1:50 scale. The data present different interior lighting conditions in terms of light source (simulated daylight, daylight, and electric system), surface colour applications, and colour temperature. The dataset makes part of a doctoral dissertation in architecture at Laval University by Carolina Espinoza-Sanhueza, supervised by Claude MH Demers, Marc Hébert, and Jean-François Lalonde.