cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3632749
title: Occurrence cubes for non-native taxa in Belgium and Europe

description: This package contains aggregated occurrence data ("occurrence cubes") for non-native taxa in Belgium and Europe. These occurrence cubes were generated by grouping species occurrence data from the Global Biodiversity Information Facility (GBIF) by year (year), 1x1km spatial EEA reference grid cell (eea_cell_code) and taxon (taxonKey or classKey). For each grouping, the number of occurrences found in GBIF (n) and the minimum coordinateUncertaintyInMeters (min_coord_uncertainty) are provided. The provided coordinateUncertaintyInMeters of an occurrence is taken into account when assigning it to a grid cell (see this code). The occurrence cubes have been used as input data for indicators and risk modelling/mapping for the Tracking Invasive Alien Species (TrIAS) project and are now used for monitoring the effectiveness of the early detection and rapid eradication of emerging Invasive Alien Species (IAS) for the LIFE RIPARIAS project.

The occurrence cubes are built on open science principles and intended to be completely reproducible:



The input data are publicly available on GBIF, with the download DOIs listed in the related identifiers of this package.

The code to process the data to cubes is publicly available on GitHub at https://github.com/trias-project/occ-cube-alien (version 20240118).


Files



be_alientaxa_cube.csv: occurrence cube of alien taxa listed by the Global Register of Introduced and Invasive Species - Belgium (Desmet et al. 2019) (GRIIS) and limited to occurrences in Belgium (country=BE).

be_alientaxa_info.csv: taxonomic information for taxa in be_alientaxa_cube.csv.

be_classes_cube.csv: occurrence cube of all classes found in Belgium (country=BE), used to assess sampling effort bias in be_alientaxa_cube.csv.

eu_modellingtaxa_cube.csv: occurrence cube of selected modelling species in Europe (bounding box).

eu_modellingtaxa_info.csv: taxonomic information for taxa in eu_modellingtaxa_cube.csv.


Acknowledgements

This work has been funded under the Belgian Science Policies Brain program (BelSPO BR/165/A1/TrIAS), the European Union's LIFE program (LIFE19 NAT/BE/000953 - LIFE RIPARIAS) and the European Union's Horizon Europe Research and Innovation Programme (ID No 101059592 - Biodiversity Building Blocks for Policy).
description: This version updates the occurrence cubes with more recent occurrence data, see datasets mentioned in Related works. The occurrence cube for alien taxa of Belgium is also based on a new version of the GRIIS checklist (Desmet et al. 2019) published on September 20, 2023.
DOI: 10.60712/si-id234053.1
title: StrainInfo SI-ID 234053.1

description: StrainInfo dataset 234053 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234054.1
title: StrainInfo SI-ID 234054.1

description: StrainInfo dataset 234054 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234122.1
title: StrainInfo SI-ID 234122.1

description: StrainInfo dataset 234122 about a strain of Erynia conica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234123.1
title: StrainInfo SI-ID 234123.1

description: StrainInfo dataset 234123 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234124.1
title: StrainInfo SI-ID 234124.1

description: StrainInfo dataset 234124 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234125.1
title: StrainInfo SI-ID 234125.1

description: StrainInfo dataset 234125 about a strain of Conidiobolus obscurus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234211.1
title: StrainInfo SI-ID 234211.1

description: StrainInfo dataset 234211 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234212.1
title: StrainInfo SI-ID 234212.1

description: StrainInfo dataset 234212 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234213.1
title: StrainInfo SI-ID 234213.1

description: StrainInfo dataset 234213 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234055.1
title: StrainInfo SI-ID 234055.1

description: StrainInfo dataset 234055 about a strain of Dacrymyces stillatus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234056.1
title: StrainInfo SI-ID 234056.1

description: StrainInfo dataset 234056 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234057.1
title: StrainInfo SI-ID 234057.1

description: StrainInfo dataset 234057 about a strain of Dactylaria dimorphospora. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234058.1
title: StrainInfo SI-ID 234058.1

description: StrainInfo dataset 234058 about a strain of Dactylellina asthenopaga. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.rrdfhu
title: Occurrence Download

description: A dataset containing 256823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Castanea sativa Mill."
 ]
}

 The dataset includes 256823 records from 1079 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004462-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id234126.1
title: StrainInfo SI-ID 234126.1

description: StrainInfo dataset 234126 about a strain of Conidiobolus obscurus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234127.1
title: StrainInfo SI-ID 234127.1

description: StrainInfo dataset 234127 about a strain of Conidiobolus obscurus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234128.1
title: StrainInfo SI-ID 234128.1

description: StrainInfo dataset 234128 about a strain of Conidiobolus obscurus. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234129.1
title: StrainInfo SI-ID 234129.1

description: StrainInfo dataset 234129 about a strain of Neoconidiobolus thromboides. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234214.1
title: StrainInfo SI-ID 234214.1

description: StrainInfo dataset 234214 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234215.1
title: StrainInfo SI-ID 234215.1

description: StrainInfo dataset 234215 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234216.1
title: StrainInfo SI-ID 234216.1

description: StrainInfo dataset 234216 about a strain of Fusarium oxysporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234217.1
title: StrainInfo SI-ID 234217.1

description: StrainInfo dataset 234217 about a strain of Fusarium redolens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234059.1
title: StrainInfo SI-ID 234059.1

description: StrainInfo dataset 234059 about a strain of Daedalea quercina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234218.1
title: StrainInfo SI-ID 234218.1

description: StrainInfo dataset 234218 about a strain of Fusarium redolens. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.21227/7apx-q741
title: Pubchem Description

description: This dataset comprises comprehensive information on chemical compounds sourced from the PubChem database, including detailed descriptions for each compound. The dataset contains curated chemical and bioactivity data for over [number] compounds, facilitating various cheminformatics and bioinformatics research applications. Each entry in the dataset includes unique PubChem Compound Identifiers (CIDs), molecular structures, physicochemical properties, biological activities, and associated descriptive metadata. The dataset is designed to support research in drug discovery, chemical informatics, and other fields requiring extensive chemical compound information. The inclusion of descriptive metadata enhances the utility of the dataset by providing contextual information, aiding in the interpretation and analysis of the chemical data. The dataset is available in a structured format, allowing for easy integration into existing workflows and computational pipelines. This resource aims to contribute to the advancement of scientific research by providing high-quality, accessible chemical compound data.
DOI: 10.60712/si-id234060.1
title: StrainInfo SI-ID 234060.1

description: StrainInfo dataset 234060 about a strain of Daedalea quercina. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234061.1
title: StrainInfo SI-ID 234061.1

description: StrainInfo dataset 234061 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234130.1
title: StrainInfo SI-ID 234130.1

description: StrainInfo dataset 234130 about a strain of Entyloma gaillardianum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234131.1
title: StrainInfo SI-ID 234131.1

description: StrainInfo dataset 234131 about a strain of Epicoccum nigrum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234132.1
title: StrainInfo SI-ID 234132.1

description: StrainInfo dataset 234132 about a strain of Epicoccum nigrum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234219.1
title: StrainInfo SI-ID 234219.1

description: StrainInfo dataset 234219 about a strain of Fusarium sambucinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234220.1
title: StrainInfo SI-ID 234220.1

description: StrainInfo dataset 234220 about a strain of Fusarium sambucinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234062.1
title: StrainInfo SI-ID 234062.1

description: StrainInfo dataset 234062 about a strain of Dictyophora duplicata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234221.1
title: StrainInfo SI-ID 234221.1

description: StrainInfo dataset 234221 about a strain of Fusarium sambucinum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234063.1
title: StrainInfo SI-ID 234063.1

description: StrainInfo dataset 234063 about a strain of Dictyophora duplicata. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234064.1
title: StrainInfo SI-ID 234064.1

description: StrainInfo dataset 234064 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234065.1
title: StrainInfo SI-ID 234065.1

description: StrainInfo dataset 234065 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234133.1
title: StrainInfo SI-ID 234133.1

description: StrainInfo dataset 234133 about a strain of Eremothecium ashbyi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234134.1
title: StrainInfo SI-ID 234134.1

description: StrainInfo dataset 234134 about a strain of Eremothecium ashbyi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234135.1
title: StrainInfo SI-ID 234135.1

description: StrainInfo dataset 234135 about a strain of Eremothecium ashbyi. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234136.1
title: StrainInfo SI-ID 234136.1

description: StrainInfo dataset 234136 about a strain of Penicillium anatolicum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234222.1
title: StrainInfo SI-ID 234222.1

description: StrainInfo dataset 234222 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234223.1
title: StrainInfo SI-ID 234223.1

description: StrainInfo dataset 234223 about a strain of Fusarium sarcochroum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234224.1
title: StrainInfo SI-ID 234224.1

description: StrainInfo dataset 234224 about a strain of Fusarium incarnatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234225.1
title: StrainInfo SI-ID 234225.1

description: StrainInfo dataset 234225 about a strain of Fusarium incarnatum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.873sxh
title: Occurrence Download

description: A dataset containing 532 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spartina densiflora Brongn."
 ]
}

 The dataset includes 532 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0260811-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id234066.1
title: StrainInfo SI-ID 234066.1

description: StrainInfo dataset 234066 about a strain of Dinemasporium strigosum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.15468/dl.483p6q
title: Occurrence Download

description: A dataset containing 17898 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Benin",
 "Geometry POLYGON((-28.97666 -17.77936,45.97666 -17.77936,45.97666 34.77936,-28.97666 34.77936,-28.97666 -17.77936))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Vitellaria paradoxa C.F.Gaertn."
 ]
}

 The dataset includes 17898 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0147455-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60712/si-id234067.1
title: StrainInfo SI-ID 234067.1

description: StrainInfo dataset 234067 about a strain of Diplodia sapinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234068.1
title: StrainInfo SI-ID 234068.1

description: StrainInfo dataset 234068 about a strain of Diplodia sapinea. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234069.1
title: StrainInfo SI-ID 234069.1

description: StrainInfo dataset 234069 about a strain of Unidentified. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234137.1
title: StrainInfo SI-ID 234137.1

description: StrainInfo dataset 234137 about a strain of Aspergillus amstelodami. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234139.1
title: StrainInfo SI-ID 234139.1

description: StrainInfo dataset 234139 about a strain of Evlachovaea kintrischica. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234140.1
title: StrainInfo SI-ID 234140.1

description: StrainInfo dataset 234140 about a strain of Exobasidium bisporum. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.
DOI: 10.60712/si-id234141.1
title: StrainInfo SI-ID 234141.1

description: StrainInfo dataset 234141 about a strain of Exobasidium karstenii. StrainInfo is a service developed to provide a resolution of microbial strain identifiers by storing culture collection numbers, their relations, and culture-associated data. StrainInfo is part of NFDI4Microbiota consortium.