cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12486056.v1
title: data for Large-aspect-ratio structures in simulated ocean surface boundary layer turbulence under a hurricane

description: Variables extracted from a Large Eddy Simulation of the ocean surface boundary layer.
DOI: 10.6084/m9.figshare.12485894
title: Niche Mapper Output Files

description: Output text files of all simulated runs from Niche Mapper simulation for Late Triassic and ETE.
DOI: 10.6084/m9.figshare.12486056.v2
title: data for Large-aspect-ratio structures in simulated ocean surface boundary layer turbulence under a hurricane

description: Variables extracted from a Large Eddy Simulation of the ocean surface boundary layer.
DOI: 10.6084/m9.figshare.12485894.v2
title: Niche Mapper Output Files

description: Output text files of all simulated runs from Niche Mapper simulation for Late Triassic and ETE.
DOI: 10.6084/m9.figshare.12486056.v3
title: data for Large-aspect-ratio structures in simulated ocean surface boundary layer turbulence under a hurricane

description: Variables extracted from a Large Eddy Simulation of the ocean surface boundary layer.
DOI: 10.6084/m9.figshare.12485894.v1
title: Niche Mapper Output Files

description: Output text files of all simulated runs from Niche Mapper simulation for Late Triassic and ETE.
DOI: 10.6084/m9.figshare.12485777
title: Method X- Linearity of drug quantification

description: Stats for linearity, drug quantification by HLPC-UV<br>
DOI: 10.6084/m9.figshare.12485777.v1
title: Method X- Linearity of drug quantification

description: Stats for linearity, drug quantification by HLPC-UV<br>
DOI: 10.6084/m9.figshare.12483473
title: PI1M: A Benchmark Database for Polymer Informatics

description: Open source data in large scale are the cornerstones for data-driven research, but they are not readily available for polymers. In this work, we build a benchmark database, called PI1M (referring to ~1 million polymers for polymer informatics), to provide data resources that can be used for machine learning research in polymer informatics. A generative model is trained on ~12,000 polymers manually collected from the largest existing polymer database PolyInfo, and then the model is used to generate ~1 million polymers. A new representation for polymers, polymer embedding (PE), is introduced, which is then used to perform several polymer informatics regression tasks for density, glass transition temperature, melting temperature and dielectric constants. By comparing the PE trained by the PolyInfo data and that by the PI1M data, we conclude that the PI1M database covers similar chemical space as PolyInfo, but significantly populate regions where PolyInfo data are sparse. We believe PI1M will serve as a good benchmark database for future research in polymer informatics.
DOI: 10.6084/m9.figshare.12482678
title: Makers y crisis sanitaria en España - Rafael Conde Melguizo.xlsx

description: During confinement in Spain to combat COVID19 and in the midst of a crisis in the healthcare system, dozens of volunteers organized to 3D print healthcare supplies and PPE to help combat the pandemic. <br>In support of this social movement, I decided to do research on a voluntary basis that would allow me to better understand the group that made up this movement, with the intention of helping it to better organize itself in future occasions. <br>The data was collected through an online survey and I promised to publish it openly. While writing a communication to present the conclusions, here I leave the data for anyone who wants to delve into them.
DOI: 10.6084/m9.figshare.12482717
title: METADATOS

description: Tabla de metadatos obtenidos de las muestras incluidas para las 465 muestras de los 9 estudios de referencia incluidos en el meta-análisis.
DOI: 10.6084/m9.figshare.12482762
title: Effect of intra-articular dexmedetomidine on experimental osteoarthritis in rats

description: Data collect on study
DOI: 10.6084/m9.figshare.12482660
title: Scanning electron microscopy analysis

description: Scanning electron microscopy analysis of Greina rocks<br>
DOI: 10.6084/m9.figshare.12482717.v1
title: METADATOS

description: Tabla de metadatos obtenidos de las muestras incluidas para las 465 muestras de los 9 estudios de referencia incluidos en el meta-análisis.
DOI: 10.6084/m9.figshare.12482762.v2
title: Effect of intra-articular dexmedetomidine on experimental osteoarthritis in rats

description: Data collect on study
DOI: 10.6084/m9.figshare.12482639
title: Supplementary Material for: Etiology of Atrial Functional Mitral Regurgitation: Insights from Transthoracic Echocardiography in 159 Consecutive Patients with Atrial Fibrillation and Preserved Left Ventricular Ejection Fraction

description: <b><i>Background:</i></b> Left atrial (LA) dilatation in patients with atrial fibrillation (AF) can induce functional mitral regurgitation (MR) despite a preserved left ventricular ejection fraction (LVEF). The purpose of this study was to investigate the etiology of this functional MR. <b><i>Methods:</i></b> We retrospectively examined clinical and echocardiographic data from 5,202 consecutive cases that underwent transthoracic echocardiography. AF appeared in 544 patients, and we selected 159 with AF and LVEF ≥50% after excluding patients with other underlying heart diseases. <b><i>Results:</i></b> Significant (moderate or greater) degrees of functional MR were seen in 13 (8.2%) patients and were more frequently seen in patients with an AF duration of &gt;10 years than in others (27 vs. 4%, <i>p</i> = 0.0057). Multiple regression analysis revealed that both the LA dimension index and the left ventricular (LV) systolic dimension index were independent determinants of the MR grading. Among the mitral morphologic parameters, the mitral annular (MA) dimension index and the hamstringing phenomenon of the posterior mitral leaflet were independent determinants of MR grading. Significant MR was not seen in patients without LA dilatations, but it occurred in 14% of patients with LA dilatation alone and in 55% with both LA and LV dilatations; the MA dimension index increased in this order. <b><i>Conclusions:</i></b> The grading of functional MR occurring in patients with AF and preserved LVEF depends on both the LA dimension and the LV systolic dimension. The MR grading also depends on both the MA dilatation and the hamstringing phenomenon of the posterior mitral leaflet.
DOI: 10.6084/m9.figshare.12482762.v1
title: Effect of intra-articular dexmedetomidine on experimental osteoarthritis in rats

description: Data collect on study
DOI: 10.6084/m9.figshare.12482450
title: Supplementary Material for: Acute Lengthening of Progenitor Mitosis Influences Progeny Fate during Cortical Development<b><i> in vivo</i></b>

description: <b><i>Background/Aims:</i></b> Prenatal microcephaly is posited to arise from aberrant mitosis of neural progenitors, which disrupts both neuronal production and survival. Although microcephaly has both a genetic and environmental etiology, the mechanisms by which dysregulation of mitosis causes microcephaly are poorly understood. We previously discovered that prolonged mitosis of mouse neural progenitors, either <i>ex vivo</i> or <i>in vitro</i>, directly alters progeny cell fate, ­resulting in precocious differentiation and apoptosis. This raises questions as to whether prolonged progenitor mitosis affects cell fate and neurogenesis <i>in vivo</i>, and what are the underlying mechanisms? <b><i>Methods/Results:</i></b> Towards addressing these knowledge gaps, we developed an <i>in vivo</i> model of mitotic delay. This uses pharmacological inhibition to acutely and reversibly prolong mitosis during cortical development, and fluorescent dyes to label direct progeny. Using this model, we discovered that a causal relationship between mitotic delay of neural progenitors and altered progeny cell fate is evident <i>in vivo</i>. Using transcriptome analyses to investigate the state of delayed cells and their progeny, we uncovered potential molecular mechanisms by which prolonged mitosis induces altered cell fates, including DNA damage and p53 signaling. We then extended our studies to human neural progenitors, demonstrating that lengthened mitosis duration also directly alters neuronal cell fate. <b><i>Conclusions:</i></b> This study establishes a valuable new experimental paradigm towards understanding mechanisms whereby lengthened mitosis duration may explain some cases of microcephaly.
DOI: 10.6084/m9.figshare.12482516.v1
title: Muscle Dysmorphia Data.sav

description: Dataset for estimation of muscle dysmorphia in individuals from Colombia
DOI: 10.6084/m9.figshare.12482378
title: Supplementary Data 1: sPTB lead SNPs and LD SNPs for independent sPTB genomic regions

description: Supplementary Table 1 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><br><b>Supplementary Data 1: sPTB lead SNPs and LD SNPs for independent sPTB genomic regions.</b> Independent sPTB regions denoted by their lead SNP (SNP with lowest P-value) and SNPs in LD after clumping Zhang et. al. sPTB GWAS.<br>
DOI: 10.6084/m9.figshare.12482357
title: Supplementary Data 2: Heatmap z-score results in tabular format for Figure 2

description: Supplementary Table 2 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<b><br></b><b>Supplementary Data 2: Heatmap z-score results in tabular format for Figure 2</b>. Each row represents an independent sPTB associated region denoted by the lead SNP (column ‘rsid’) and corresponding z-score for evolutionary measures (columns). <br>
DOI: 10.6084/m9.figshare.12482348
title: Supplementary Data 3: Heatmap p-value results in tabular format for Figure 2

description: Supplementary Table 3 from the manuscript <br>"Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><br><b>Supplementary Data 3: Heatmap p-value results in tabular format for Figure 2. </b>Each row represents an independent sPTB associated region denoted by the lead SNP (column ‘rsid’) and the corresponding empirical p-value obtained by comparing to the matched background distribution for difference evolutionary measures (columns). <br>
DOI: 10.6084/m9.figshare.12482378.v1
title: Supplementary Table 1

description: Supplementary Table 1 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br>
DOI: 10.6084/m9.figshare.12482330
title: Supplementary Material for: Validation of a Questionnaire-Suitable Comorbidity Index in Patients Undergoing Radical Cystectomy

description: <b><i>Objective:</i></b> To investigate the capability of a modified self-administrable comorbidity index recommended in the standard sets for neoplastic diseases published by the International Consortium for Health Outcomes Measurement (ICHOM) to predict 90-day and long-term mortality after radical cystectomy. <b><i>Methods:</i></b> A single-center series of 1,337 consecutive patients who underwent radical cystectomy for muscle-invasive or high-risk non-muscle-invasive urothelial or undifferentiated bladder cancer were stratified by the modified self-administrable comorbidity index and Charlson score, respectively. Multivariate logit models (for 90-day mortality) and proportional-hazards models (for overall and non-bladder cancer mortality) were used for statistical workup. <b><i>Results:</i></b> Considering 90-day mortality, both comorbidity indexes contributed independent information when analyzed together with age (<i>p</i> &lt; 0.0001). The Charlson score performed slightly better (area under the curve [AUC] 0.74 vs. 0.72 for the ICHOM-recommended comorbidity index). Considering 5-year overall mortality in 727 patients with complete observation, the performance of both measures was similar (AUC 0.63 vs. 0.62, including age AUC 0.66 for both indexes). With 6-sided stratifications, the modified self-administrable comorbidity index separated the risk groups slightly better (<i>p</i> values for directly neighboring curves: 0.0068–0.1043 vs. 0.0001–0.8100). <b><i>Conclusion:</i></b> The ICHOM-recommended modified self-administrable comorbidity index is capable of predicting 90-day mortality and long-term non-bladder cancer mortality after radical cystectomy similarly to the commonly used Charlson score.
DOI: 10.6084/m9.figshare.12482345.v1
title: Nitrate Data by Section

description: Nitrate data for private wells collected in the Wisconsin area. The data provides the average of nitrate(mg/L) per Section in the state of Wisconsin.
DOI: 10.6084/m9.figshare.12482348.v1
title: Supplementary Table 3

description: Supplementary Table 3 from the manuscript <br>"Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br>
DOI: 10.6084/m9.figshare.12482357.v1
title: Supplementary Table 2

description: Supplementary Table 2 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"
DOI: 10.6084/m9.figshare.12482378.v3
title: Supplementary Data 1: sPTB lead SNPs and LD SNPs for independent sPTB genomic regions

description: Supplementary Table 1 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><br><b>Supplementary Data 1: sPTB lead SNPs and LD SNPs for independent sPTB genomic regions.</b> Independent sPTB regions denoted by their lead SNP (SNP with lowest P-value) and SNPs in LD after clumping Zhang et. al. sPTB GWAS.<br>
DOI: 10.6084/m9.figshare.12482330.v1
title: Supplementary Material for: Validation of a Questionnaire-Suitable Comorbidity Index in Patients Undergoing Radical Cystectomy

description: <b><i>Objective:</i></b> To investigate the capability of a modified self-administrable comorbidity index recommended in the standard sets for neoplastic diseases published by the International Consortium for Health Outcomes Measurement (ICHOM) to predict 90-day and long-term mortality after radical cystectomy. <b><i>Methods:</i></b> A single-center series of 1,337 consecutive patients who underwent radical cystectomy for muscle-invasive or high-risk non-muscle-invasive urothelial or undifferentiated bladder cancer were stratified by the modified self-administrable comorbidity index and Charlson score, respectively. Multivariate logit models (for 90-day mortality) and proportional-hazards models (for overall and non-bladder cancer mortality) were used for statistical workup. <b><i>Results:</i></b> Considering 90-day mortality, both comorbidity indexes contributed independent information when analyzed together with age (<i>p</i> &lt; 0.0001). The Charlson score performed slightly better (area under the curve [AUC] 0.74 vs. 0.72 for the ICHOM-recommended comorbidity index). Considering 5-year overall mortality in 727 patients with complete observation, the performance of both measures was similar (AUC 0.63 vs. 0.62, including age AUC 0.66 for both indexes). With 6-sided stratifications, the modified self-administrable comorbidity index separated the risk groups slightly better (<i>p</i> values for directly neighboring curves: 0.0068–0.1043 vs. 0.0001–0.8100). <b><i>Conclusion:</i></b> The ICHOM-recommended modified self-administrable comorbidity index is capable of predicting 90-day mortality and long-term non-bladder cancer mortality after radical cystectomy similarly to the commonly used Charlson score.
DOI: 10.6084/m9.figshare.12482378.v2
title: Supplementary Data 1

description: Supplementary Table 1 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br>
DOI: 10.6084/m9.figshare.12482345.v2
title: Nitrate Data by Section, Center for Watershed Science and Education, Univ of Wisconsin-Stevens Point/Univ of Wisconsin-Madison Division of Extension, Stevens Point, WI

description: Nitrate data for private wells collected in the Wisconsin area. The data provides the average of nitrate(mg/L) per Section in the state of Wisconsin.
DOI: 10.6084/m9.figshare.12482357.v3
title: Supplementary Data 2: Heatmap z-score results in tabular format for Figure 2

description: Supplementary Table 2 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<b><br></b><b>Supplementary Data 2: Heatmap z-score results in tabular format for Figure 2</b>. Each row represents an independent sPTB associated region denoted by the lead SNP (column ‘rsid’) and corresponding z-score for evolutionary measures (columns). <br>
DOI: 10.6084/m9.figshare.12482321
title: Supplementary Data 4: 1KG Individual IDs used for analysis.

description: Supplementary Table 4 from "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><b>Supplementary Data 4: 1KG Individual IDs used for analysis. </b>Individual IDs and corresponding 1000 Genomes superpopulation assignment used for calculating evolutionary measures. <br>
DOI: 10.6084/m9.figshare.12482348.v3
title: Supplementary Data 3: Heatmap p-value results in tabular format for Figure 2

description: Supplementary Table 3 from the manuscript <br>"Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><br><b>Supplementary Data 3: Heatmap p-value results in tabular format for Figure 2. </b>Each row represents an independent sPTB associated region denoted by the lead SNP (column ‘rsid’) and the corresponding empirical p-value obtained by comparing to the matched background distribution for difference evolutionary measures (columns). <br>
DOI: 10.6084/m9.figshare.12482357.v2
title: Supplementary Data 2

description: Supplementary Table 2 associated with the manuscript "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"
DOI: 10.6084/m9.figshare.12482348.v2
title: Supplementary Data 3

description: Supplementary Table 3 from the manuscript <br>"Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br>
DOI: 10.6084/m9.figshare.12482321.v1
title: Supplementary Table4

description: Supplementary Table 4 from "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"
DOI: 10.6084/m9.figshare.12482321.v3
title: Supplementary Data 4: 1KG Individual IDs used for analysis.

description: Supplementary Table 4 from "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"<br><b>Supplementary Data 4: 1KG Individual IDs used for analysis. </b>Individual IDs and corresponding 1000 Genomes superpopulation assignment used for calculating evolutionary measures. <br>
DOI: 10.6084/m9.figshare.12482321.v2
title: Supplementary Data 4

description: Supplementary Table 4 from "Accounting for diverse evolutionary forces reveals mosaic patterns of selection on human preterm birth loci"
DOI: 10.6084/m9.figshare.12482048
title: Published research on flipped learning 2000-2019

description: This data set shows the number of peer-reviewed published articles from the eric.ed.gov database, with one of the terms "flipped learning", "flipped classroom", or "inverted classroom" in either the title or abstract. The data include works published between 2000 and 2019 inclusively.
DOI: 10.6084/m9.figshare.12481985
title: Metadata record for: The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities

description: This dataset contains key characteristics about the data described in the Data Descriptor The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12481994
title: Zostera marina SNPs Norway

description: Genetic variation in eelgrass (Zostera marine). After quality control 583,991 SNPs remain.
DOI: 10.6084/m9.figshare.12481985.v1
title: Metadata record for: The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities

description: This dataset contains key characteristics about the data described in the Data Descriptor The BenBioDen database, a global database for meio-, macro- and megabenthic biomass and densities. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12481994.v1
title: Zostera marina SNPs Norway

description: Genetic variation in eelgrass (Zostera marine). After quality control 583,991 SNPs remain.
DOI: 10.6084/m9.figshare.12481946
title: Metadata record for: GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

description: This dataset contains key characteristics about the data described in the Data Descriptor GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12481946.v1
title: Metadata record for: GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies

description: This dataset contains key characteristics about the data described in the Data Descriptor GlobalFungi, a global database of fungal occurrences from high-throughput-sequencing metabarcoding studies. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12481826
title: Micronutrient supplementation affects transcriptional and epigenetic regulation of lipid metabolism in a dose dependent manner

description: Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. 21 liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS.<br>It contains the following nine Excel files with formatted and annotated RNA-seq and RRBS results.1. Dataset_01_DEG.xlsx2. Dataset_02_KEGG_DEG.xlsx3. Dataset_03_CpG_L2L1.xlsx4. Dataset_04_CpG_L3L1.xlsx5. Dataset_05_DMG.xlsx6. Dataset_06_KEGG_DMG_L2L1.xlsx7. Dataset_07_KEGG_DMG_L2L1.xlsx8. Dataset_08_Common_DMG.xlsx9. Dataset_09_DEG_DMC.xlsx<br>Detailed descriptions of the data are found in the Supplementary information of Saito et al., 2020.
DOI: 10.6084/m9.figshare.12481826.v1
title: Micronutrient supplementation affects transcriptional and epigenetic regulation of lipid metabolism in a dose dependent manner

description: Three groups of Atlantic salmon were fed with graded levels of micronutrient supplementation. 21 liver samples were collected at final harvest stage. The samples were processed by two restriction enzymes, MspI and TaqI, for RNA-seq and RRBS.<br>It contains the following nine Excel files with formatted and annotated RNA-seq and RRBS results.1. Dataset_01_DEG.xlsx2. Dataset_02_KEGG_DEG.xlsx3. Dataset_03_CpG_L2L1.xlsx4. Dataset_04_CpG_L3L1.xlsx5. Dataset_05_DMG.xlsx6. Dataset_06_KEGG_DMG_L2L1.xlsx7. Dataset_07_KEGG_DMG_L2L1.xlsx8. Dataset_08_Common_DMG.xlsx9. Dataset_09_DEG_DMC.xlsx<br>Detailed descriptions of the data are found in the Supplementary information of Saito et al., 2020.