cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.14ns8/17
title: target_regions

description: This archive contains the target regions as well as results of blastx vs TAIR and Ptaeda. Furthermore it contains bwa index files.
DOI: 10.5061/dryad.2343k/1
title: sm1.742
DOI: 10.5061/dryad.2343k/2
title: sm2.743
DOI: 10.5061/dryad.2343k/3
title: sm3.744
DOI: 10.5061/dryad.2343k/4
title: Hellinger transformed OTU table_76_samples
DOI: 10.5061/dryad.2343k/5
title: Vegetation data from 76 subplot
DOI: 10.5061/dryad.2343k/6
title: Sample cordinates and env variables
DOI: 10.5061/dryad.2343k/7
title: Script for DCA analysis
DOI: 10.5061/dryad.2343k/8
title: Script for NMDS analysis
DOI: 10.5061/dryad.2343k/9
title: Ordisurf
DOI: 10.5061/dryad.cr672/1
title: Genotyped Bombus from Pennsylvania Mountain Colorado 2008

description: This file contains genotypes of Bombus individuals from Pennsylvania Mountain Natural Area, Park County, CO
DOI: 10.5061/dryad.cr672/2
title: Alpine clover fecundity and Bombus abundance 2008

description: This file contains 2008 fecundity data for two alpine clovers, Trifolium dasyphyllum and T. parryi from four sites near the Pennsylvania Mountain Natural Area, Park County, Colorado. In addition, the number of caught individual Bombus from each site and the effective number of colonies determined by genetic analysis are also included.
DOI: 10.5061/dryad.d38f2/1
title: Predator_plasticity_experiments
DOI: 10.5061/dryad.870j3/1
title: Supplementary Materials
DOI: 10.5061/dryad.585t1/1
title: Loropetalum chinense microsatellite
DOI: 10.5061/dryad.qc700/1
title: mammal species richness and environmental variables at global scale

description: Include database of the species richness of mammals and different environmental variables at global scale
DOI: 10.5061/dryad.s5587/1
title: Multi-unit responses to acoustic signals within A1 columns

description: The data set consists of eight multi-unit electrophysiology experiments located within a single .zip file. Acoustic feature (signal type and duration) are in subfolders where data rasters for each recording session conducted can be found. Columns represent time and rows trial number. Data is presented as Matlab files.
DOI: 10.5061/dryad.dd84g/1
title: Figure1Data
DOI: 10.5061/dryad.dd84g/2
title: Figure2Data
DOI: 10.5061/dryad.dd84g/3
title: Figure4Data
DOI: 10.5061/dryad.dd84g/4
title: Figure5Data
DOI: 10.5061/dryad.dd84g/5
title: FigureS1Data
DOI: 10.5061/dryad.dd84g/6
title: FigureS3Data
DOI: 10.5061/dryad.dd84g/10
title: TableS1Data
DOI: 10.5061/dryad.dd84g/11
title: TableS2Data
DOI: 10.5061/dryad.dd84g/7
title: FigureS4Data
DOI: 10.5061/dryad.dd84g/8
title: Table1Data
DOI: 10.5061/dryad.dd84g/9
title: Table2Data
DOI: 10.5061/dryad.st1g8/1
title: Data archive_PLOS ONE_7-11-14

description: Primary productivity data for macroalgal assemblages, including: P-E curves and action spectra
DOI: 10.5061/dryad.np29h/1
title: Dataset-HDY-14-OR0183R

description: Genotypic data for the 192 analyzed trees. Tree names include an abbreviation of their locations, followed by an abbreviation of the species and a numeric identifier (1 to 12). Marker genotypes are described in two adjacent columns.
DOI: 10.5061/dryad.sc1pq/1
title: Persistence_times

description: Persistence time in days for each microcosm.
DOI: 10.5061/dryad.sc1pq/2
title: Am_nat_2000_series_for_Dryad

description: Densities of predators and prey for all microcosms. See Key to microcosm types to relate microcosm numbers to treatments.
DOI: 10.5061/dryad.sc1pq/3
title: Key_to_microcosm_types

description: Table relating microcosm numbers to Figure 1 in the published paper.
DOI: 10.5061/dryad.sc1pq/4
title: Notes_for_Holyoak_2000

description: Information about data files and their interpretation
DOI: 10.5061/dryad.sc1pq/5
title: Diagram_of_microcosms

description: Adobe PDF document containing a hand-drawn diagram that includes microcosm numbers, treatments letters in caps (as in Holyoak 2000 in Am. Nat) and the label lower case letters a-d for individual bottles. The labeling scheme is also described in the plain text information file but is included here for additional clarity.
DOI: 10.5061/dryad.550g3/1
title: Mating trait & fitness assays

description: Data from laboratory assays of ejaculate weight (male weight loss during a single mating event), lifespan (days) of once-mated females, and the number of offspring produced from a single mating. Mating pairs were crosses between 11 experimental evolution lines, evolved for 20 generations under one of four treatment combinations: male-biased sex ratio + fed, female-biased sex ratio + fed, male-biased sex ratio + unfed, female-biased sex ratio + unfed. Crosses were made within and between treatment combinations but not within lines.
DOI: 10.5061/dryad.fm67n/1
title: Files for taxonomy comparison

description: Synthetic mock dataset used for taxonomy assignment comparison, across multiple read lengths. File includes scripts used and raw validation data.
DOI: 10.5061/dryad.fm67n/2
title: Files for comparison of sequence aligners

description: Synthetic mock datasets used to compare the mulitple sequence aligners cmalign (from the infernal package) versus the NAST algorithm (from the PyNAST implementation). File includes R scripts and resulting raw validation data.
DOI: 10.5061/dryad.fm67n/3
title: Files for validation with realistic synthetic reads

description: Synthetic mock datasets used for validation based on a realistic human stool microbiome dataset. These are NOT real bacterial reads. Those reads are available as example data from the IM-TORNADO pipeline. File includes scripts and raw validation data.
DOI: 10.5061/dryad.fm67n/4
title: Files for taxonomy comparison using reads with errors

description: Synthetic mock datasets (100 replicates) used for validation of taxonomy using reads with errors and different length. File also includes scripts and resulting raw data for the validation.
DOI: 10.5061/dryad.fm67n/5
title: Files for validation of beta diversity using 16S rDNA regions V3 to V5

description: Synthetic mock datasets (100 replicates) used for validation of beta diversity across synthetic communities using 16S rDNA region V3 to V5. File also includes scripts and resulting raw data for the validation.
DOI: 10.5061/dryad.fm67n/6
title: Files for validation of beta diversity using 16S rDNA regions V6 to V9

description: Synthetic mock datasets (100 replicates) used for validation of beta diversity across synthetic communities using 16S rDNA region V6 to V9. File also includes scripts and resulting raw data for the validation.
DOI: 10.5061/dryad.k4h77/1
title: ESM_prevalence

description: Prevalence data from sites (hibernacula, swarm, maternity colonies) affected by white-nose syndrome used to construct figure 2. Time is converted as described in the methods, where 0 represented the first day of fall swarm sampling.
DOI: 10.5061/dryad.k4h77/2
title: ESM_loads

description: Mean load values of individuals at sites (hibernacula, fall swarm, maternity colonies) affected by white-nose syndrome used to construct figure 3. Time is modified as described in the methods where 0 represented the first day of fall swarm sampling. lse is the standard error of the log loads means.
DOI: 10.5061/dryad.t9j07/1
title: Raw Read Count Expression Data for ND Chu et al 2014

description: Total raw read count expression data from Nucella lapillus from the accompanying publication. This file was created by eXpress (http://bio.math.berkeley.edu/eXpress/) for analysis in DEseq2. The sample names are as in the publication. Each row represents a transcript, as assembled in Trinity (see publication for transcriptome assembly accession; http://trinityrnaseq.sourceforge.net/). Experimental snails were collected from near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/2
title: Express Results File AC_006

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/3
title: Express Parameters File AC_006

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/4
title: Express Results File AC_008

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_006, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/10
title: Express Results File ANC_003

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_003, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/12
title: Express Results File ANC_34

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_34, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/5
title: Express Parameters File AC_008

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_008, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/6
title: Express Results File AC_43

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_43, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/7
title: Express Parameters File AC_43

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_43, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/8
title: Express Results File AC_42

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample AC_42, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/9
title: Express Parameters File AC_42

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample AC_42, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.370rv/1
title: Simulated data, Figure 1a

description: Simulated data, Figure 1a
DOI: 10.5061/dryad.t9j07/11
title: Express Parameters File ANC_003

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_003, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/13
title: Express Parameters File ANC_34

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_34, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/14
title: Express Results File ANC_41

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample ANC_41, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/15
title: Express Parameters File ANC_41

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample ANC_41, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/16
title: Express Results File HNC_31

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample HNC_31, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/17
title: Express Parameters File HNC_31

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample HNC_31, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/18
title: Express Results File HNC_37

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) results file for sample HNC_37, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.t9j07/19
title: Express Parameters File HNC_37

description: Raw eXpress (http://bio.math.berkeley.edu/eXpress/) parameters file for sample HNC_37, named as in Chu et al. 2014. Gene expression data is from Nucella lapillus collected near Nahant, Massachusetts, USA.
DOI: 10.5061/dryad.370rv/2
title: Simulated data, Figure 2a
DOI: 10.5061/dryad.370rv/3
title: Simulated data, Figure 2b
DOI: 10.5061/dryad.370rv/4
title: Simulated data, Figure 2c
DOI: 10.5061/dryad.370rv/5
title: Simulated data, Figure 3
DOI: 10.5061/dryad.370rv/6
title: Simulated data, Figure 4
DOI: 10.5061/dryad.370rv/7
title: Simulated data, Figure S2
DOI: 10.5061/dryad.370rv/8
title: The model
DOI: 10.5061/dryad.370rv/9
title: Simulated Data, Figure 1b
DOI: 10.5061/dryad.3qb7t/1
title: All data underlying the findings

description: Data for 3 figures (sheets 1-3) and qPCR results for 6 plates (sheets 7-12)
DOI: 10.5061/dryad.vf86p/1
title: Steller's Sea Cow Cytochrome b Sequences

description: This document is a FASTA format file that contains partial sequences for five Steller's sea cow (Hydrodamalis gigas) bones from St. Lawrence Island, AK, USA.
DOI: 10.5061/dryad.vm0vc/1
title: Konrad_etal_2014_survival

description: This file contains the data which was used to analyse the survival of Laboulbenia-carrying ants (1) under starvation conditions and (2) after Metarhizium challenge.
DOI: 10.5061/dryad.vm0vc/2
title: Konrad_etal_2014_behaviour

description: This file contains the data which was used to analyse the behaviour of ants with low (1-75 thalli) and high (&gt;150 thalli) Laboulbenia level.
DOI: 10.5061/dryad.vm0vc/3
title: Konrad_etal_2014_gene_expression

description: This file contains the data which was used to analyse the immune gene expression in ants with low (1-75 thalli) and high (&gt;150 thalli) Laboulbenia level.
DOI: 10.5061/dryad.qk746/1
title: Kovach_etal_WCTRBT_hybridization

description: The excel file contains the genotypic data for all individual trout (Oncorhynchus) that were sampled from 2003 - 2007.  Fish were genotyped at 8 species diagnostic microsatellite loci.  Columns D-S are the raw allele lengths, while columns T - AI describe whether each allele at each locus is of westslope cutthroat trout ancestry (denoted by 0) or rainbow trout ancestry (denoted by 1).  Other descriptive columns include individual ID, maturity (spawning adult or outmigrating juvenile), date captured (i.e., migration date), length (in mm), and age (for Langford juveniles only).  Data for Langford and Cyclone are on two separate sheets.
DOI: 10.5061/dryad.50hf0/1
title: Enhalus acoroides microsatllite genotypic data

description: Enhalus acoroides microsatllite genotypic data, 9 loci, 47 populations, 1950 samples. Column A: collection site. Row 1: microsatellite locus name. Allele sizes (base pairs) were output by Applied Biosystems Genetic Analyzer 3130xl.
DOI: 10.26187/deakin.22281313.v1
title: Data of "A Virtual Reality Study Investigating the Train Illusion"

description: Data that has been generated and analysed for the publication "A Virtual Reality Study Investigating the Train Illusion".
DOI: 10.25919/30k2-km98
title: Parkes observations for project P1173 semester 2022OCTS_07

description: Spider pulsar systems are compact binary pulsars with low-mass companions in tight orbits, where the primary pulsar is ablating the secondary through the output of high-energy radiation and pulsar wind due to proximity. These systems present an interesting opportunity to probe the mechanisms related to the destruction of these low-mass bodies in the radio regime, as debris surrounding the ablated secondary companion causes the pulsar emission to propagate and scatter as it moves through it, along our line of sight - revealing details of the complex, turbulent structure of this region. Recent studies have shown that the eclipsing region can cause pulsar signals to scatter, revealing small-scale structure of the turbulent field, as well as a strong variation in the pulsar’s polarsiation, rotation measure and dispersion measure. Under this proposal, we wish to study two known spider pulsars for their full orbit with the Parkes UWL capability – which has not been achieved by any other telescope. This will give us the opportunity to analyse he eclipsing effects of these systems.
DOI: 10.6084/m9.figshare.19483418.v1
title: Changes in nutrient concentration resulting from floods and their impact on the estuary-sea continuum

description: longitude, latitude, salinity, temperature, nitrate, phosphate, and Chl-a. Surface and bottom layers.<br>
DOI: 10.25946/21939470
title: Methods for assisting in detection of synthetic identity fraud in credit applications in financial institutions - DATASET

description: This project is focused on developing a process and algorithms for detecting specific types of fraud in financial institutions. It includes gathering data and developing and performing tests on the collected data.
DOI: 10.25946/21939470.v1
title: Methods for assisting in detection of synthetic identity fraud in credit applications in financial institutions - DATASET

description: This project is focused on developing a process and algorithms for detecting specific types of fraud in financial institutions. It includes gathering data and developing and performing tests on the collected data.
DOI: 10.5281/zenodo.7696093
title: DTM and orthomosaic of a shallow water area near Lazzareto Nuovo island (Venice Lagoon, Italy) - BRAHMS project

description: DTM and orthomosaic model of a 6-by-12-m shallow water area (average depth about 1.5 m) along a minor tidal channel branching from Canale Carbonera near Lazzareto Nuovo island, Lagoon of Venice (IT), generated by SfM photogrammetric approach. Photos were acquired on 6 October 2022 by a snorkel diver holding a hydrodynamic board equipped with 4 synchronized action cameras, 70-120 cm from the seafloor. Two pairs of cameras were fixed to the board 70 cm apart, each pair consisting of one camera facing nadir and one inclined approx. 45°. Cameras were set in time-lapse mode (2 fps, wide FoV, ISO 100-400). To cover the area, the diver swimmed back and forth, producing a pattern mostly composed of 12 longitudinal swaths partially overlapping. Reel lines were preliminarily deployed on the seafloor as a guide, together with 5 photogrammetric plates (33x33 cm). For each of 4 vertices and 5 plates, lat/long coordinates were acquired with Trimble SPS585 GNSS receiver (RTK corrections) and z-value as water depth measured with RBR solo<sup>3</sup> depth logger. Analyses were perfomed with Agisoft Metashape. Sparse point cloud reconstruction was carried out through incremental alignment procedure, with a total of 3815 photos alligned. DTM (in m, water surface during depth measurements being zero elevation) was created with dense cloud as basis and WGS84/UTM 33N projection. Orthomosaic was created based on DTM and same coordinate system. Scaling and georeferentiation were based on 9 ground control points (4 vertices and 5 plates). The resolution of DTM and orthomosaic are 1.28 mm/pix and 0.32 mm/pix, respectively.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.5281/zenodo.7696092
title: DTM and orthomosaic of a shallow water area near Lazzareto Nuovo island (Venice Lagoon, Italy) - BRAHMS project

description: DTM and orthomosaic model of a 6-by-12-m shallow water area (average depth about 1.5 m) along a minor tidal channel branching from Canale Carbonera near Lazzareto Nuovo island, Lagoon of Venice (IT), generated by SfM photogrammetric approach. Photos were acquired on 6 October 2022 by a snorkel diver holding a hydrodynamic board equipped with 4 synchronized action cameras, 70-120 cm from the seafloor. Two pairs of cameras were fixed to the board 70 cm apart, each pair consisting of one camera facing nadir and one inclined approx. 45°. Cameras were set in time-lapse mode (2 fps, wide FoV, ISO 100-400). To cover the area, the diver swimmed back and forth, producing a pattern mostly composed of 12 longitudinal swaths partially overlapping. Reel lines were preliminarily deployed on the seafloor as a guide, together with 5 photogrammetric plates (33x33 cm). For each of 4 vertices and 5 plates, lat/long coordinates were acquired with Trimble SPS585 GNSS receiver (RTK corrections) and z-value as water depth measured with RBR solo<sup>3</sup> depth logger. Analyses were perfomed with Agisoft Metashape. Sparse point cloud reconstruction was carried out through incremental alignment procedure, with a total of 3815 photos alligned. DTM (in m, water surface during depth measurements being zero elevation) was created with dense cloud as basis and WGS84/UTM 33N projection. Orthomosaic was created based on DTM and same coordinate system. Scaling and georeferentiation were based on 9 ground control points (4 vertices and 5 plates). The resolution of DTM and orthomosaic are 1.28 mm/pix and 0.32 mm/pix, respectively.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project
DOI: 10.5281/zenodo.7696189
title: DTM and orthomosaic of a shallow water area near Allacciante - Valgrande channels (Venice Lagoon, Italy) - BRAHMS project

description: DTM and orthomosaic model of a 6-by-12-m shallow water area (average depth about 1.5 m) on a subidal flat near Allacciante and Valgrande channels, Lagoon of Venice (IT), generated by SfM photogrammetric approach. Photos were acquired on 11 May 2022 by a snorkel diver holding a hydrodynamic board equipped with 4 synchronized action cameras, 50-90 cm from the seafloor. Two pairs of cameras were fixed to the board 70 cm apart, each pair consisting of one camera facing nadir and one inclined approx. 45°. Cameras were set in time-lapse mode (2 fps, wide FoV, ISO 100-400). To cover the area, the diver swimmed back and forth, producing a pattern mostly composed of 11 longitudinal swaths partially overlapping. Reel lines were preliminarily deployed on the seafloor as a guide, together with 5 photogrammetric plates (33x33 cm). For each of 4 vertices and 5 plates, lat/long coordinates were acquired with Trimble SPS585 GNSS receiver (RTK corrections) and z-value as water depth measured with RBR solo<sup>3</sup> depth logger. Analyses were perfomed with Agisoft Metashape. Sparse point cloud reconstruction was carried out through incremental alignment procedure, with a total of 2668 photos alligned. DTM (in m, water surface during depth measurements being zero elevation) was created with dense cloud basis and WGS84/UTM 33N projection. Orthomosaic was created based on DTM and same coordinate system. Scaling and georeferentiation were based on 9 ground control points (4 vertices and 5 plates). The resolution of DTM and orthomosaic are 2.01 mm/pix and 0.503 mm/pix, respectively.
description: The research leading to these results received partial funding from the European Union's Horizon 2020 research and innovation programme under grant agreement No 730984, ASSEMBLE Plus project