cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7750661
title: Additional file 9: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S6. Gene ontology cell process enrichment on significantly regulated phospho-proteins after 5, 30 and 60 min of glucose stimulation. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 2754 kb)
DOI: 10.7284/113704
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1402 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750661.v1
title: Additional file 9: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S6. Gene ontology cell process enrichment on significantly regulated phospho-proteins after 5, 30 and 60 min of glucose stimulation. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 2754 kb)
DOI: 10.6084/m9.figshare.7750649
title: Additional file 7: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S4. Identification of proteins containing glucose regulated p-sites and concomitantly regulated at the protein level. The table shows the effect of glucose on the protein level of proteins containing glucose-regulated p-sites, and includes information on the fold change, p-value, accession number, and the number / percentage of regulated proteins. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7750652
title: Additional file 8: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S5. Gene ontology localization enrichment on significantly regulated phospho-proteins after 5, 30 and 60 min of glucose stimulation. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 415 kb)
DOI: 10.6084/m9.figshare.7750643
title: Additional file 5: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S3. Significantly regulated p-sites upon 60 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750643.v1
title: Additional file 5: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S3. Significantly regulated p-sites upon 60 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750652.v1
title: Additional file 8: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S5. Gene ontology localization enrichment on significantly regulated phospho-proteins after 5, 30 and 60 min of glucose stimulation. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 415 kb)
DOI: 10.7284/113701
title: Fluorometer data collected during research cruise AE1402 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750649.v1
title: Additional file 7: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S4. Identification of proteins containing glucose regulated p-sites and concomitantly regulated at the protein level. The table shows the effect of glucose on the protein level of proteins containing glucose-regulated p-sites, and includes information on the fold change, p-value, accession number, and the number / percentage of regulated proteins. (XLSX 37 kb)
DOI: 10.6084/m9.figshare.7750637
title: Additional file 4: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S2. Significantly regulated p-sites upon 30 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750640
title: Additional file 4 of Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress

description: Table S1. Differentially expressed genes and their GO as in the heat map Fig. 1. Table S2. Gene enrichment analysis from BiNGO in Cytoscape 3.1.1. Each gene set identifies numbers of differentially expressed genes (FDR
DOI: 10.7284/113702
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1402 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750631
title: Additional file 3: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S1. Significantly regulated p-sites upon 5 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750637.v1
title: Additional file 4: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S2. Significantly regulated p-sites upon 30 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750631.v1
title: Additional file 3: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S1. Significantly regulated p-sites upon 5 min of glucose stimulation. The table shows p-site quantification of five experimental replicates performed on both experimental conditions (2.5 and 16.7 mM glucose), including delta differences and p-values. The table displays only regulated p-sites with p-value ≤0.05 (unpaired t-test) and FC (Log2) &gt; 0.3 or
DOI: 10.6084/m9.figshare.7750640.v1
title: Additional file 4 of Transcriptomic analysis reveals protein homeostasis breakdown in the coral Acropora millepora during hypo-saline stress

description: Table S1. Differentially expressed genes and their GO as in the heat map Fig. 1. Table S2. Gene enrichment analysis from BiNGO in Cytoscape 3.1.1. Each gene set identifies numbers of differentially expressed genes (FDR
DOI: 10.7284/113713
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1403 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113711
title: Winch data collected during research cruise AE1403 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113709
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1404 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750604
title: Additional file 16: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S9. List of drugs tested for their ability to regulate mitochondrial respiration induced by glucose. The table displays information on the drug tested, targeted mechanism, effect of the interaction and the range of concentrations tested. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.7750604.v1
title: Additional file 16: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S9. List of drugs tested for their ability to regulate mitochondrial respiration induced by glucose. The table displays information on the drug tested, targeted mechanism, effect of the interaction and the range of concentrations tested. (XLSX 9 kb)
DOI: 10.7284/113710
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1404 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750589
title: Additional file 12: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S8. List of genes assigned to different trajectory clusters and used for gene ontology analysis. (XLSX 9 kb)
DOI: 10.7284/113707
title: Fluorometer data collected during research cruise AE1404 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750589.v1
title: Additional file 12: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S8. List of genes assigned to different trajectory clusters and used for gene ontology analysis. (XLSX 9 kb)
DOI: 10.7284/113708
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1404 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750577
title: Additional file 10: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S7. Gene ontology cell process enrichment on phospho proteins exclusively regulated either at 5, 30 or 60 min. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. To identify the most differentially affected categories between groups, the standard deviation of the –Log10 (p-value) amongst the three groups was calculated for every GO term and then the whole ontology was sorted in decrease order of standard deviation. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 2006 kb)
DOI: 10.6084/m9.figshare.7750577.v1
title: Additional file 10: of Glucose-dependent phosphorylation signaling pathways and crosstalk to mitochondrial respiration in insulin secreting cells

description: Table S7. Gene ontology cell process enrichment on phospho proteins exclusively regulated either at 5, 30 or 60 min. Phospho-regulated proteins IDs (Uniprot KB) were matched to the corresponding genes. Subsequently genes were assigned to gene ontologies using Metacore®. To identify the most differentially affected categories between groups, the standard deviation of the –Log10 (p-value) amongst the three groups was calculated for every GO term and then the whole ontology was sorted in decrease order of standard deviation. The table displays a cell process enrichment analysis (p-value and false discovery rate, FDR) and the list of genes significantly regulated in every particular category. (XLS 2006 kb)
DOI: 10.7284/113706
title: Winch data collected during research cruise AE1404 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113718
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1405 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750562
title: Additional file 2: of Aims, design and preliminary findings of the Hellenic National Nutrition and Health Survey (HNNHS)

description: 3 worksheets (All, Males, Females) for age adjusted chronic disease calculations, standardized by Hellenic population distribution (2011 Census). (XLSX 35 kb)
DOI: 10.6084/m9.figshare.7750562.v1
title: Additional file 2: of Aims, design and preliminary findings of the Hellenic National Nutrition and Health Survey (HNNHS)

description: 3 worksheets (All, Males, Females) for age adjusted chronic disease calculations, standardized by Hellenic population distribution (2011 Census). (XLSX 35 kb)
DOI: 10.7284/113715
title: Winch data collected during research cruise AE1405 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113722
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1406 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113723
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1406 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113720
title: Fluorometer data collected during research cruise AE1406 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113721
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1406 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750493
title: Additional file 1: of HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

description: Clinical cohort metadata. Metadata for three paediatric cohorts recruited in Kimberley, South Africa, including longitudinal CD4+ T cell and viral load data for paediatric HIV cohort age ≤ 60 months in Kimberley, South Africa. HBV vaccine responses.csv. HBV vaccine responses.xlsx. COSAC cohort Tables 1 and 2.docx. These files are available on-line using the following link: https://doi.org/10.6084/m9.figshare.5601679 . (ZIP 239 kb)
DOI: 10.7284/113719
title: Winch data collected during research cruise AE1406 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750493.v1
title: Additional file 1: of HBV vaccination and PMTCT as elimination tools in the presence of HIV: insights from a clinical cohort and dynamic model

description: Clinical cohort metadata. Metadata for three paediatric cohorts recruited in Kimberley, South Africa, including longitudinal CD4+ T cell and viral load data for paediatric HIV cohort age ≤ 60 months in Kimberley, South Africa. HBV vaccine responses.csv. HBV vaccine responses.xlsx. COSAC cohort Tables 1 and 2.docx. These files are available on-line using the following link: https://doi.org/10.6084/m9.figshare.5601679 . (ZIP 239 kb)
DOI: 10.6084/m9.figshare.7750484
title: MOESM2 of Effects of a health educational intervention on malaria knowledge, motivation, and behavioural skills: a randomized controlled trial

description: Additional file 2. Raw data of the study.
DOI: 10.7284/113727
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1407 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750484.v1
title: MOESM2 of Effects of a health educational intervention on malaria knowledge, motivation, and behavioural skills: a randomized controlled trial

description: Additional file 2. Raw data of the study.
DOI: 10.7284/113728
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AE1407 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113725
title: Fluorometer data collected during research cruise AE1407 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113726
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1407 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113724
title: Winch data collected during research cruise AE1407 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113732
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AE1408 using a Hawaii UHDAS instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113730
title: Fluorometer data collected during research cruise AE1408 using a Turner 10-AU instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750418
title: Additional file 1: of Genome plasticity favours double chromosomal Tn4401b-blaKPC-2 transposon insertion in the Pseudomonas aeruginosa ST235 clone

description: Table S1. Characteristics of the P. aeruginosa ST235 genomes included in the phylogenetic tree and the genomic comparative analysis. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.7750418.v1
title: Additional file 1: of Genome plasticity favours double chromosomal Tn4401b-blaKPC-2 transposon insertion in the Pseudomonas aeruginosa ST235 clone

description: Table S1. Characteristics of the P. aeruginosa ST235 genomes included in the phylogenetic tree and the genomic comparative analysis. (XLSX 16 kb)
DOI: 10.7284/113731
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1408 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/113729
title: Winch data collected during research cruise AE1408 using a Markey DUSH-5 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119020
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1409 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119021
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1410 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750361
title: Additional file 8: of Physician agreement on the diagnosis of sepsis in the intensive care unit: estimation of concordance and analysis of underlying factors in a multicenter cohort

description: STROBE Checklist. (XLSX 14 kb)
DOI: 10.7284/119022
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1411 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750361.v1
title: Additional file 8: of Physician agreement on the diagnosis of sepsis in the intensive care unit: estimation of concordance and analysis of underlying factors in a multicenter cohort

description: STROBE Checklist. (XLSX 14 kb)
DOI: 10.7284/119023
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1412 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119024
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1413 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119025
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1414 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750307
title: Additional file 2: of Physician agreement on the diagnosis of sepsis in the intensive care unit: estimation of concordance and analysis of underlying factors in a multicenter cohort

description: Line Data File. (XLS 425 kb)
DOI: 10.7284/119026
title: GNSS (Global Navigation Satellite System) data collected during research cruise AE1415 using a Furuno GP-90 instrument system onboard the platform RV Atlantic Explorer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7750307.v1
title: Additional file 2: of Physician agreement on the diagnosis of sepsis in the intensive care unit: estimation of concordance and analysis of underlying factors in a multicenter cohort

description: Line Data File. (XLS 425 kb)