cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.16965637
title: Dataset (2022-2024) of the Austrian EOM field experiment in Grabenegg

description: Dataset descriptionThis dataset describes the data generated in the course of the EJP Soil project EOM4SOIL. The dataset consists of soil data, yield data, nutrient content in the harvested crop, EOM properties and management data. The dataset contains six tabs, "Document meta data", "soil", "plants", "EOM", "agricultural management" and "meta". Tab "Document meta data" gives information on the authors, the data collection time frame, terms of use, etc. In "soil"  contains information on soil properties. "plants" contains yield data of silage maize (2022 and 2024) and spring wheat (2023) and macronutrient (N, P, K, Ca, Mg and S) content in the harvested crops. "EOM" contains EOM properties -nutrients and trace elements. "agricultural management" contains information about the arrangement and management of the treatments. "meta" contains information about the units and methods used. 

Project descriptionThe EOM field experiment with organic amendments was established in 2022 at the AGES field station in Grabenegg. The organic amendments included biowaste compost, biochar, a combination of biowaste compost and biochar and biogas digestate from a waste plant. These EOM variants were compared with a control without fertilisation and an optimal mineral fertilisation variant. In addition, two NPK fertilised cover crop variants (one with  three and one with eight mixing partners) were included. This field experiment was part of the European Joint Program for SOIL ‘Towards climate-smart sustainable management of agricultural soils’ (EJP SOIL) funded by the European Union Horizon 2020 research and innovation programme (Grant Agreement N° 862695). The internal project  EOM4SOIL aimed to investigate the effects of different organic amendments on soil health parameters, crop yields and nutrient dynamics in the soil-plant system. Furthermore, this experiment served as a basis for the measurements of, e.g., N2O and NH3 emissions and measurements related to N dynamics (e.g., soil NO3 and NH4).
DOI: 10.5281/zenodo.16965638
title: Dataset (2022-2024) of the Austrian EOM field experiment in Grabenegg

description: Dataset descriptionThis dataset describes the data generated in the course of the EJP Soil project EOM4SOIL. The dataset consists of soil data, yield data, nutrient content in the harvested crop, EOM properties and management data. The dataset contains six tabs, "Document meta data", "soil", "plants", "EOM", "agricultural management" and "meta". Tab "Document meta data" gives information on the authors, the data collection time frame, terms of use, etc. In "soil"  contains information on soil properties. "plants" contains yield data of silage maize (2022 and 2024) and spring wheat (2023) and macronutrient (N, P, K, Ca, Mg and S) content in the harvested crops. "EOM" contains EOM properties -nutrients and trace elements. "agricultural management" contains information about the arrangement and management of the treatments. "meta" contains information about the units and methods used. 

Project descriptionThe EOM field experiment with organic amendments was established in 2022 at the AGES field station in Grabenegg. The organic amendments included biowaste compost, biochar, a combination of biowaste compost and biochar and biogas digestate from a waste plant. These EOM variants were compared with a control without fertilisation and an optimal mineral fertilisation variant. In addition, two NPK fertilised cover crop variants (one with  three and one with eight mixing partners) were included. This field experiment was part of the European Joint Program for SOIL ‘Towards climate-smart sustainable management of agricultural soils’ (EJP SOIL) funded by the European Union Horizon 2020 research and innovation programme (Grant Agreement N° 862695). The internal project  EOM4SOIL aimed to investigate the effects of different organic amendments on soil health parameters, crop yields and nutrient dynamics in the soil-plant system. Furthermore, this experiment served as a basis for the measurements of, e.g., N2O and NH3 emissions and measurements related to N dynamics (e.g., soil NO3 and NH4).
DOI: 10.15468/dl.48c6b6
title: Occurrence Download

description: A dataset containing 246917 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Alopecurus geniculatus"
 ]
}

 The dataset includes 246917 records from 978 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000113-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bun6bq
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Dalbergia rhachiflexa J.Linares & M.Sousa"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022908-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yhsdsd
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenopharyngodon idella (Valenciennes, 1844)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022910-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15132867
title: Transcriptome-wide RNA accessibility mapping reveals structured RNA elements and pervasive conformational rearrangements under stress

description: RNA structure plays a central role in post-transcriptional gene regulation, modulating RNA stability, translation, and interactions with RNA-binding proteins (RBPs). However, capturing RNA conformations at scale remains challenging. Here, we introduce DMS-TRAM-seq (Dimethyl Sulfate–Transcriptome-wide RNA Accessibility Mapping by sequencing), which probes RNA structure across nearly the entire transcriptome. Using DMS-TRAM-seq, we generated secondary structure predictions for over 9,000 human transcripts, including hundreds of non-coding RNAs, and identified more than 700 previously unannotated, high-confidence structured elements. Importantly, the enhanced coverage provided by DMS-TRAM-seq enabled comparative analyses, revealing RNAs that undergo structural rearrangements in response to cellular perturbations. Integration with RBP motifs and ribosome profiling uncovered altered RNA–RBP interactions during oxidative stress and showed that translation inhibition broadly drives RNAs toward their thermodynamically favored conformations. DMS-TRAM-seq enables interrogation of the RNA structurome and its plasticity at an unprecedented scale, opening new directions for elucidating the structural basis of RNA regulation.
DOI: 10.5281/zenodo.15132868
title: Transcriptome-wide RNA accessibility mapping reveals structured RNA elements and pervasive conformational rearrangements under stress

description: RNA structure plays a central role in post-transcriptional gene regulation, modulating RNA stability, translation, and interactions with RNA-binding proteins (RBPs). However, capturing RNA conformations at scale remains challenging. Here, we introduce DMS-TRAM-seq (Dimethyl Sulfate–Transcriptome-wide RNA Accessibility Mapping by sequencing), which probes RNA structure across nearly the entire transcriptome. Using DMS-TRAM-seq, we generated secondary structure predictions for over 9,000 human transcripts, including hundreds of non-coding RNAs, and identified more than 700 previously unannotated, high-confidence structured elements. Importantly, the enhanced coverage provided by DMS-TRAM-seq enabled comparative analyses, revealing RNAs that undergo structural rearrangements in response to cellular perturbations. Integration with RBP motifs and ribosome profiling uncovered altered RNA–RBP interactions during oxidative stress and showed that translation inhibition broadly drives RNAs toward their thermodynamically favored conformations. DMS-TRAM-seq enables interrogation of the RNA structurome and its plasticity at an unprecedented scale, opening new directions for elucidating the structural basis of RNA regulation.
DOI: 10.15468/dl.2bp4py
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hydrocynus vittatus Castelnau, 1861",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022716-250525065834625/datasets/export for details.
DOI: 10.15468/dl.6ghjrb
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Labeobarbus nelspruitensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 33 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000239-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttt2vz
title: Occurrence Download

description: A dataset containing 841716 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Veronica chamaedrys"
 ]
}

 The dataset includes 841716 records from 2723 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000130-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru56xr
title: Occurrence Download

description: A dataset containing 65327 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucobryum glaucum (Hedw.) Ångstr."
 ]
}

 The dataset includes 65327 records from 462 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022979-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q4s4xg
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UWBM Ornithology Collection",
 "Preparations is tissue",
 "PublishingOrg is 06fcbbf0-0562-11d8-b851-b8a03c50a862",
 "TaxonKey is Strix occidentalis (Xántus de Vésey, 1860)"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023008-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.98guph
title: Occurrence Download

description: A dataset containing 2851 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cenostigma pyramidale (Tul.) Gagnon & G.P.Lewis"
 ]
}

 The dataset includes 2851 records from 130 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022791-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24470758
title: merged_gene_tpms_longestT.csv.zip

description: Data from 750 individuals published as part of the manuscript "Population level gene expression can repeatedly link genes to functions in maize"<br>Duplicated genotypes are marked with *_R2.<br><br>You can use the code below to extract them.<br><br>library(data.table)data &lt;- fread("merged_gene_tpms_longest.csv", data.table = F)head(data[1:5,1:5])genotypes &lt;- colnames(data[-1]) # we remove the first column "GeneID"duplicated.genotypes &lt;- genotypes[grep("_R2", genotypes)] # duplicated genotypes are ending with *_R2duplicated.genotypes1 &lt;- data[,c("GeneID", sub("_R2", "", duplicated.genotypes))]duplicated.genotypes2 &lt;- data[,c("GeneID", duplicated.genotypes)]<br>head(duplicated.genotypes1[,1:5])head(duplicated.genotypes2[,1:5])<br>
DOI: 10.6084/m9.figshare.24470758.v1
title: merged_gene_tpms_longestT.csv.zip

description: Data from 750 individuals published as part of the manuscript "Population level gene expression can repeatedly link genes to functions in maize"<br>Duplicated genotypes are marked with *_R2.<br><br>You can use the code below to extract them.<br><br>library(data.table)data &lt;- fread("merged_gene_tpms_longest.csv", data.table = F)head(data[1:5,1:5])genotypes &lt;- colnames(data[-1]) # we remove the first column "GeneID"duplicated.genotypes &lt;- genotypes[grep("_R2", genotypes)] # duplicated genotypes are ending with *_R2duplicated.genotypes1 &lt;- data[,c("GeneID", sub("_R2", "", duplicated.genotypes))]duplicated.genotypes2 &lt;- data[,c("GeneID", duplicated.genotypes)]<br>head(duplicated.genotypes1[,1:5])head(duplicated.genotypes2[,1:5])<br>
DOI: 10.15468/dl.fgdht7
title: Occurrence Download

description: A dataset containing 15974 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crocosmia ×crocosmiiflora (Lemoine) N.E.Br."
 ]
}

 The dataset includes 15974 records from 571 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022959-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cxvbca
title: Occurrence Download

description: A dataset containing 173 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is 5ffa575c-fcd4-4583-9611-545f67b04316",
 "TaxonKey is Myotis lucifugus (Le Conte, 1831)"
 ]
}

 The dataset includes 173 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022624-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tnyh2w
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oncorhynchus mykiss (Walbaum, 1792)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 290 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022625-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16966113
title: BAM simulations for the work "Black hole spectroscopy of collapsing and merging neutron stars"

description: All the simulations for the article "Black hole spectroscopy of collapsing and merging neutron stars". The .zip file contains the BHNS, BNS, and dRNS simulations, as well as early dRNS waveform tests. Also, there is a folder containing the 130 dRNS equilibrium models.
DOI: 10.5281/zenodo.16966112
title: BAM simulations for the work "Black hole spectroscopy of collapsing and merging neutron stars"

description: All the simulations for the article "Black hole spectroscopy of collapsing and merging neutron stars". The .zip file contains the BHNS, BNS, and dRNS simulations, as well as early dRNS waveform tests. Also, there is a folder containing the 130 dRNS equilibrium models.
DOI: 10.15468/dl.ftzvqh
title: Occurrence Download

description: A dataset containing 1143980 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Benin"
 ]
}

 The dataset includes 1143980 records from 536 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023142-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qrdakw
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Enteromius amatolicus (Skelton, 1990)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.5701 -24.0715,25.5395 -24.0715,25.5395 -28.5786,30.5701 -28.5786,30.5701 -24.0715))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023065-250525065834625/datasets/export for details.
DOI: 10.15468/dl.yyvp8s
title: Occurrence Download

description: A dataset containing 28 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 IF(ISNULL(kingdomkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY kingdomkey, "year")) kingdomcount,
 IF(ISNULL(phylumkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY phylumkey, "year")) phylumcount,
 IF(ISNULL(classkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY classkey, "year")) classcount,
 IF(ISNULL(orderkey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY orderkey, "year")) ordercount,
 IF(ISNULL(familykey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY familykey, "year")) familycount,
 IF(ISNULL(genuskey), NULL, SUM(COUNT(*)) OVER (
 PARTITION BY genuskey, "year")) genuscount,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 (occurrence.taxonkey = 2436717 OR occurrence.acceptedtaxonkey = 2436717 OR occurrence.kingdomkey = 2436717 OR occurrence.phylumkey = 2436717 OR occurrence.classkey = 2436717 OR occurrence.orderkey = 2436717 OR occurrence.familykey = 2436717 OR occurrence.genuskey = 2436717 OR occurrence.specieskey = 2436717)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year"

 The dataset's 28 records were derived from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023055-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3f3d7
title: Occurrence Download

description: A dataset containing 19764 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Machine Observation, Specimen, Occurrence evidence, Observation)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (January, February, March, April, May, June, July, August, September, October, November, December)",
 "TaxonKey is Phasianus Linnaeus, 1758",
 "Year 1045-2025"
 ]
}

 The dataset includes 19764 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022911-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q6kvgm
title: Occurrence Download

description: A dataset containing 3525 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-4.47687 36.65027,-4.41665 36.65027,-4.41665 36.70894,-4.47687 36.70894,-4.47687 36.65027))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Plantae"
 ]
}

 The dataset includes 3525 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022909-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zr4dsp
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalbergia richardsii Sunarno & H.Ohashi"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022912-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15595848
title: Data on Built Enviroment and Internal Trip Capture for Porland Metro and DC Metro Transit Stations

description: Built environment and internal trip capture data for 1-mile buffers around Portland MAX Light Rail stations and Washington DC Metro stations. Internal trip capture data is from streetlight and includes counts of trip origins, trip destination, and internal trip count for pedestrian, bicycle, and auto modes for the data period May 1, 2021-April 30, 2022. Data on population from US Census. Data on employment from US Census LODES. Data on intersections and streets are from local GIS files. Some additional variables are from the Environmental Protection Agencies Smart Location Database. GIS data was gathered in 2024 and 2025.