cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5010767
title: R code and data

description: Surveillance for viral respiratory illnesses, Respiratory syncytial virus (RSV) was implemented in Dadaab refugee camp in north eastern Kenya in 2007. Paediatric and adult patients who presented at a camp medical unit, and met the case definition for influenza-like illness (ILI) or severe acute respiratory infection (SARI), were enrolled into the laboratory-enhanced respiratory surveillance system and tested for all of the above disease after an informed consent form was completed by adults, older minors, and guardians of all minors &lt;15 years. The monthly counts of all RSV cases among children younger than 5 years were included in the present analysis; the main outcome of interest being monthly RSV incidence rate in this age group. Local weather and climatic data, including: the mean temperature and mean dew point for the day (both in <sup>0</sup>F); mean sea level pressure for the day in millibars; mean visibility for the day in miles; mean wind speed for the day in knots; minimum and maximum temperature (<sup>0</sup>F) reported during the day; and the total precipitation (in inches) reported during the day were obtained from the World Meteorological Organization’s (WMO’s), World Weather Watch Program, according to WMO Resolution 40 (Cg-XII) (available at http://www7.ncdc.noaa.gov/CDO/cdo).
DOI: 10.6084/m9.figshare.5010686
title: Dataset for: Probabilistic forecasting in infectious disease epidemiology: The thirteenth Armitage lecture

description: Routine surveillance of notifiable infectious diseases gives rise to daily or weekly counts of reported cases stratified by region and age group. From a public health perspective, forecasts of infectious disease spread are of central importance. We argue that such forecasts need to properly incorporate the attached uncertainty, so should be probabilistic in nature. However, forecasts also need to take into account temporal dependencies inherent to communicable diseases, spatial dynamics through human travel, and social contact patterns between age groups. We describe a multivariate time series model for weekly surveillance counts on norovirus gastroenteritis from the 12 city districts of Berlin, in six age groups, from week 2011/27 to week 2015/26. The following year (2015/27 to 2016/26) is used to assess the quality of the predictions. Probabilistic forecasts of the total number of cases can be derived through Monte Carlo simulation, but first and second moments are also available analytically. Final size forecasts as well as multivariate forecasts of the total number of cases by age group, by district, and by week are compared across different models of varying complexity. This leads to a more general discussion of issues regarding modelling, prediction and evaluation of public health surveillance data.
DOI: 10.6084/m9.figshare.5010680
title: Dataset for: Anterior cingulate cortex supports effort allocation toward a qualitatively preferred option

description: The anterior cingulate cortex (ACC) is known to be involved in effortful choice, yet its role in cost-benefit evaluation of qualitatively different rewards (more/less preferred), beyond magnitude differences (larger/smaller), is poorly understood. Selecting among qualitatively different options is a decision type commonly faced by humans. Here we assessed the role of ACC on a task that has primarily been used to probe striatal function in motivation. Rats were trained to stable performance on a progressive ratio schedule for sucrose pellets and were then given sham surgeries (control) or excitotoxic NMDA-lesions of ACC. Subsequently, a choice was introduced: chow was concurrently available while animals could work for the preferred sucrose pellets. ACC lesions produced a significant decrease in lever presses for sucrose pellets compared to control, whereas chow consumption was unaffected. Lesions had no effect on sucrose pellet preference when both options were freely available. When lab chow was not concurrently available, ACC lesioned rats exhibited similar lever pressing as controls. During a test under specific satiety for sucrose pellets, ACC lesioned rats also showed intact devaluation effects. The effects of ACC lesions in our task are not mediated by decreased appetite, a change in food preference, a failure to update value, or a learning deficit. Taken together, we found that ACC lesions decreased effort for a qualitatively-preferred option. These results are discussed with reference to effects of striatal manipulations and our recent report of a role for basolateral amygdala in effortful choice.
DOI: 10.6084/m9.figshare.5010674
title: Yukon Marine Life Species Taxonomy Tree

description: Taxonomic classification of marine species identified photographically on the artificial reef Yukon as of 5-15-17.
DOI: 10.6084/m9.figshare.5010686.v1
title: Dataset for: Probabilistic forecasting in infectious disease epidemiology: The thirteenth Armitage lecture

description: Routine surveillance of notifiable infectious diseases gives rise to daily or weekly counts of reported cases stratified by region and age group. From a public health perspective, forecasts of infectious disease spread are of central importance. We argue that such forecasts need to properly incorporate the attached uncertainty, so should be probabilistic in nature. However, forecasts also need to take into account temporal dependencies inherent to communicable diseases, spatial dynamics through human travel, and social contact patterns between age groups. We describe a multivariate time series model for weekly surveillance counts on norovirus gastroenteritis from the 12 city districts of Berlin, in six age groups, from week 2011/27 to week 2015/26. The following year (2015/27 to 2016/26) is used to assess the quality of the predictions. Probabilistic forecasts of the total number of cases can be derived through Monte Carlo simulation, but first and second moments are also available analytically. Final size forecasts as well as multivariate forecasts of the total number of cases by age group, by district, and by week are compared across different models of varying complexity. This leads to a more general discussion of issues regarding modelling, prediction and evaluation of public health surveillance data.
DOI: 10.6084/m9.figshare.5010680.v1
title: Dataset for: Anterior cingulate cortex supports effort allocation toward a qualitatively preferred option

description: The anterior cingulate cortex (ACC) is known to be involved in effortful choice, yet its role in cost-benefit evaluation of qualitatively different rewards (more/less preferred), beyond magnitude differences (larger/smaller), is poorly understood. Selecting among qualitatively different options is a decision type commonly faced by humans. Here we assessed the role of ACC on a task that has primarily been used to probe striatal function in motivation. Rats were trained to stable performance on a progressive ratio schedule for sucrose pellets and were then given sham surgeries (control) or excitotoxic NMDA-lesions of ACC. Subsequently, a choice was introduced: chow was concurrently available while animals could work for the preferred sucrose pellets. ACC lesions produced a significant decrease in lever presses for sucrose pellets compared to control, whereas chow consumption was unaffected. Lesions had no effect on sucrose pellet preference when both options were freely available. When lab chow was not concurrently available, ACC lesioned rats exhibited similar lever pressing as controls. During a test under specific satiety for sucrose pellets, ACC lesioned rats also showed intact devaluation effects. The effects of ACC lesions in our task are not mediated by decreased appetite, a change in food preference, a failure to update value, or a learning deficit. Taken together, we found that ACC lesions decreased effort for a qualitatively-preferred option. These results are discussed with reference to effects of striatal manipulations and our recent report of a role for basolateral amygdala in effortful choice.
DOI: 10.6084/m9.figshare.5010602
title: Main data file (PLOS ONE)

description: main data used for PLOS ONE study PONE-D-17-04892R1
DOI: 10.6084/m9.figshare.5009543
title: Aquifer Response Under Uncertainty: Recharge Interpretations and Candidate Solution Sets #1 & #2 for the Barton Springs segment

description: These datasets were generated using a simulation-optimization engine for the Barton Springs segment of the Edwards aquifer. “DescriptionANDInitConfig.xls” is annotated with attribute descriptions. This file serves also shows the general layout of all simulation results. The total set of simulations are saved with hash codes in csv format.<br>
DOI: 10.6084/m9.figshare.5009543.v1
title: Aquifer Response Under Uncertainty: Recharge Interpretations and Candidate Solution Sets #1 & #2 for the Barton Springs segment

description: These datasets were generated using a simulation-optimization engine for the Barton Springs segment of the Edwards aquifer. “DescriptionANDInitConfig.xls” is annotated with attribute descriptions. This file serves also shows the general layout of all simulation results. The total set of simulations are saved with hash codes in csv format.<br>
DOI: 10.6084/m9.figshare.5009840
title: bint_fishmovie32_100.mat

description: See README.txt (attached).
DOI: 10.6084/m9.figshare.5009495
title: raw-data.csv

description: Raw dataset used in analyses in paper 10.1186/s12862-017-0961-8
DOI: 10.6084/m9.figshare.5009840.v2
title: bint_fishmovie32_100.mat

description: See README.txt (attached).
DOI: 10.6084/m9.figshare.5009840.v1
title: bint_fishmovie32_100.mat

description: See README.txt (attached).
DOI: 10.6084/m9.figshare.5009063
title: 各电影的相关变量一览表

description: the data of the movie rating prediction model
DOI: 10.6084/m9.figshare.5009045
title: 电影选取一览表.xlsx

description: the data of movies selected
DOI: 10.6084/m9.figshare.5009084
title: A review of dosimetric and toxicity modeling of proton versus photon craniospinal irradiation for pediatrics medulloblastoma

description: <b>Background:</b> Craniospinal irradiation (CSI) is the standard radiation therapy treatment for medulloblastoma. Conventional CSI photon therapy (Photon-CSI) delivers significant dose to surrounding normal tissue (NT). Research into pediatric CSI with proton therapy (Proton-CSI) has increased, with the aim of exploiting the potential to reduce NT dose and associated post-treatment complications. This review aims to compare treatment outcomes of pediatric medulloblastoma patients between Proton- and Photon-CSI treatments. <b>Material and methods:</b> A search and review of studies published between 1990 and 2016 comparing pediatric (2–18 years) medulloblastoma Proton- and Photon-CSI in three aspects – normal organ sparing and target coverage; normal organ dysfunction and second malignancy risks – was completed. <b>Results:</b> Fifteen studies were selected for review and the results were directly compared. Proton-CSI reported improved out-of-field organ sparing while target coverage improvements were inconsistent. Normal organ dysfunction risks were predicted to be lower following Proton-CSI. Secondary malignancy risks (SMRs) were generally lower with Proton-CSI based on several different risk models. <b>Conclusions:</b> Proton-CSI conferred better treatment outcomes than Photon-CSI for pediatric medulloblastoma patients. This review serves to compare the current literature in the absence of long-term data from prospective studies.
DOI: 10.6084/m9.figshare.5009039
title: Robust FCC solute diffusion predictions from ab-initio machine learning methods - Supplementary material

description: We evaluate the performance of four machine learning methods for modeling and predicting FCC solute diffusion barriers. More than 200 FCC solute diffusion barriers from previous density functional theory (DFT) calculations served as our dataset to train four machine learning methods: linear regression (LR), decision tree (DT), Gaussian kernel ridge regression (GKRR), and artificial neural network (ANN). We sep- arately optimize key physical descriptors favored by each method to model diffusion barriers. We also assess the ability of each method to extrapolate when faced with new hosts with limited known data. GKRR and ANN were found to perform the best, showing 0.15 eV cross-validation errors and predicting impurity diffusion in new hosts to within 0.2 eV when given only 5 data points from the host. We demonstrate the success of a combined DFT + data mining approach towards solving materials science challenges and predict the diffusion barrier of all available impurities across all FCC hosts.<br>
DOI: 10.6084/m9.figshare.5009084.v1
title: A review of dosimetric and toxicity modeling of proton versus photon craniospinal irradiation for pediatrics medulloblastoma

description: <b>Background:</b> Craniospinal irradiation (CSI) is the standard radiation therapy treatment for medulloblastoma. Conventional CSI photon therapy (Photon-CSI) delivers significant dose to surrounding normal tissue (NT). Research into pediatric CSI with proton therapy (Proton-CSI) has increased, with the aim of exploiting the potential to reduce NT dose and associated post-treatment complications. This review aims to compare treatment outcomes of pediatric medulloblastoma patients between Proton- and Photon-CSI treatments. <b>Material and methods:</b> A search and review of studies published between 1990 and 2016 comparing pediatric (2–18 years) medulloblastoma Proton- and Photon-CSI in three aspects – normal organ sparing and target coverage; normal organ dysfunction and second malignancy risks – was completed. <b>Results:</b> Fifteen studies were selected for review and the results were directly compared. Proton-CSI reported improved out-of-field organ sparing while target coverage improvements were inconsistent. Normal organ dysfunction risks were predicted to be lower following Proton-CSI. Secondary malignancy risks (SMRs) were generally lower with Proton-CSI based on several different risk models. <b>Conclusions:</b> Proton-CSI conferred better treatment outcomes than Photon-CSI for pediatric medulloblastoma patients. This review serves to compare the current literature in the absence of long-term data from prospective studies.
DOI: 10.6084/m9.figshare.5009063.v2
title: 各电影的相关变量一览表

description: the data of the movie rating prediction model
DOI: 10.6084/m9.figshare.5008973
title: Spruyt & De Houwer (submitted). On the automaticity of relational stimulus processing: Experiment 3

description: Zip folder with raw data files of Experiment 3
DOI: 10.6084/m9.figshare.5008988
title: Peach.480.SNPs

description: To detect the breeding footprints, we sequenced 480 peach accessions, including 52 wild relative accessions, 213 landrace accessions, and 215 improved cultivars. Using this resequencing date, we detected the genomic change during domestication and improvement.
DOI: 10.6084/m9.figshare.5009063.v1
title: New draft item

description: the data of the movie rating prediction model
DOI: 10.6084/m9.figshare.5008919
title: Spruyt & De Houwer (submitted). On the automaticity of relational stimulus processing: Footnote 3

description: Zip folder with raw data files of the unpublished extrinsic relational Simon study referred to in Footnote 3.
DOI: 10.6084/m9.figshare.5009009
title: Tectonic environments of sapphire and ruby revealed by a global oxygen isotope compilation

description: Many sapphire and ruby occurrences are spatially linked with orogenic belts such as the Pan-African Orogen, the Himalayas, and regions of active or former subduction along the western margin of the Pacific Ocean. These gemstones have oxygen isotope compositions (δ<sup>18</sup>O) that span &gt;45‰, reflecting the wide range of environments and conditions involved in corundum (Al<sub>2</sub>O<sub>3</sub>) formation. We compiled a global data base of sapphire and ruby δ<sup>18</sup>O, from which the following major groups of gemstones emerge: a dominant population of sapphires with δ<sup>18</sup>O centred around 5.5‰ (the mantle value) that is spatially related to regions of former subduction; a lesser population of sapphires and rubies with slightly higher δ<sup>18</sup>O that are associated with skarn and pegmatite; rubies with relatively low δ<sup>18</sup>O of 0‰–7‰ that occur in hydrothermally altered ultramafic metamorphic rocks in collision zones; and rubies with high δ<sup>18</sup>O of 14‰–25‰ that are found, almost exclusively, in Himalayan marble. The spatial distribution of the δ<sup>18</sup>O groups relative to plate boundaries provides insight into the two major periods of continental collision involved in sapphire and ruby formation: the Ediacaran collision of East and West Gondwana (the East African Orogeny) and the Cenozoic collision of India and Asia.
DOI: 10.6084/m9.figshare.5008973.v1
title: Spruyt & De Houwer (submitted). On the automaticity of relational stimulus processing: Experiment 3

description: Zip folder with raw data files of Experiment 3
DOI: 10.6084/m9.figshare.5009009.v1
title: Tectonic environments of sapphire and ruby revealed by a global oxygen isotope compilation

description: Many sapphire and ruby occurrences are spatially linked with orogenic belts such as the Pan-African Orogen, the Himalayas, and regions of active or former subduction along the western margin of the Pacific Ocean. These gemstones have oxygen isotope compositions (δ<sup>18</sup>O) that span &gt;45‰, reflecting the wide range of environments and conditions involved in corundum (Al<sub>2</sub>O<sub>3</sub>) formation. We compiled a global data base of sapphire and ruby δ<sup>18</sup>O, from which the following major groups of gemstones emerge: a dominant population of sapphires with δ<sup>18</sup>O centred around 5.5‰ (the mantle value) that is spatially related to regions of former subduction; a lesser population of sapphires and rubies with slightly higher δ<sup>18</sup>O that are associated with skarn and pegmatite; rubies with relatively low δ<sup>18</sup>O of 0‰–7‰ that occur in hydrothermally altered ultramafic metamorphic rocks in collision zones; and rubies with high δ<sup>18</sup>O of 14‰–25‰ that are found, almost exclusively, in Himalayan marble. The spatial distribution of the δ<sup>18</sup>O groups relative to plate boundaries provides insight into the two major periods of continental collision involved in sapphire and ruby formation: the Ediacaran collision of East and West Gondwana (the East African Orogeny) and the Cenozoic collision of India and Asia.
DOI: 10.6084/m9.figshare.5008883
title: Supplementary Material for: Beneficial Effect of Maintaining Hepatic Reserve during Chemotherapy on the Outcomes of Patients with Hepatocellular Carcinoma

description: Hepatocellular carcinoma (HCC) usually develops in chronically damaged liver. We investigated hepatic reserves during chemotherapy of patients with advanced HCC and compensated liver function to evaluate the effect on patients' outcomes of maintaining hepatic reserve after chemotherapy. We retrospectively reviewed the medical records of 190 patients with Child-Pugh A with advanced HCC who were treated with sorafenib or hepatic arterial infusion chemotherapy (HAIC). We investigated the Child-Pugh score and albumin-bilirubin grade for hepatic reserve, and evaluated the effect of the change in Child-Pugh scores on patients' outcomes. Subjects were treated with sorafenib (<i>n</i> = 59) or HAIC (<i>n</i> = 131). Of patients with Child-Pugh data, 66.7% maintained or improved their Child-Pugh score after 4 weeks. Treatment with HAIC was the only factor that significantly contributed to maintaining Child-Pugh scores after 4 weeks. The overall survival of patients with a higher Child-Pugh score after 4 weeks was shorter than that of patients whose Child-Pugh classification was unchanged. Multivariate analysis demonstrated that an increased Child-Pugh score after 4 weeks was one of the independent unfavorable prognostic factors. The change of hepatic reserve as a function of albumin-bilirubin grade did not significantly correlate with patients' outcomes. Maintaining the Child-Pugh score during chemotherapy benefits the outcomes of patients with advanced HCC, even those with sufficient hepatic reserve.
DOI: 10.6084/m9.figshare.5008919.v1
title: Spruyt & De Houwer (submitted). On the automaticity of relational stimulus processing: Footnote 3

description: Zip folder with raw data files of the unpublished extrinsic relational Simon study referred to in Footnote 3.
DOI: 10.6084/m9.figshare.5008880
title: Data from: Intraspecific variation in traits reduces ability of trait-based models to predict community structure.

description: This dataset includes all raw data needed to recreate the analyses presented in the paper:<br>Read, Q. D., J. A. Henning, and N. J. Sanders. Intraspecific variation in traits reduces ability of trait-based models to predict community structure. Journal of Vegetation Science, accepted. (DOI forthcoming)<br>Included are 4 .csv files, described below. In all cases, missing values are coded as NA, the native R designation for missing values. In addition, the file <b>columnmetadata.txt </b>includes a fuller description of each of the columns in the 4 .csv files, and <b>speciescodes.csv </b>links species codes in the other data files with the accepted scientific name.<br><b>communitydata.csv</b> - Each row represents a quadrat at a given site, with columns containing percent cover for each species.<b>observationalsitedata.csv</b> - Each row represents a study site, with columns containing abiotic variables measured at each site.<b>rangesizes.csv</b> - Each row represents a species and its range size estimated from GBIF.org occurrence records.<b>traitdata.csv</b> - Each row represents an individual plant from one of the study sites, with associated identifying information and trait measurements.<br><br><br><br><br>
DOI: 10.6084/m9.figshare.5008880.v1
title: Data from: Intraspecific variation in traits reduces ability of trait-based models to predict community structure.

description: This dataset includes all raw data needed to recreate the analyses presented in the paper:<br>Read, Q. D., J. A. Henning, and N. J. Sanders. Intraspecific variation in traits reduces ability of trait-based models to predict community structure. Journal of Vegetation Science, accepted. (DOI forthcoming)<br>Included are 4 .csv files, described below. In all cases, missing values are coded as NA, the native R designation for missing values. In addition, the file <b>columnmetadata.txt </b>includes a fuller description of each of the columns in the 4 .csv files, and <b>speciescodes.csv </b>links species codes in the other data files with the accepted scientific name.<br><b>communitydata.csv</b> - Each row represents a quadrat at a given site, with columns containing percent cover for each species.<b>observationalsitedata.csv</b> - Each row represents a study site, with columns containing abiotic variables measured at each site.<b>rangesizes.csv</b> - Each row represents a species and its range size estimated from GBIF.org occurrence records.<b>traitdata.csv</b> - Each row represents an individual plant from one of the study sites, with associated identifying information and trait measurements.<br><br><br><br><br>