cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14589063.v1
title: Metadata record for the article: Systemic immune reaction in axillary lymph nodes adds to tumor infiltrating lymphocytes in triple-negative breast cancer prognostication

description: <b>Summary</b><br> This metadata record provides details of the data supporting the claims of the related article: “Systemic immune reaction in axillary lymph nodes adds to tumor infiltrating lymphocytes in triple-negative breast cancer prognostication”. The related study aimed to capture systemic immunity, as identified by histological alterations in cancer-free lymph nodes (LNs), and determine whether this carried clinical importance. Type of data: histopathological assessment of primary tumour and LNs Subject of data: <i>Homo sapiens</i> Sample size: 161 Population characteristics: patients with invasive breast carcinoma of no special type (IBC-NST) treated between 2005 and 2010 at Tianjin Medical University Cancer Hospital, China, consisting of HR-negative patients (HER2-positive or TNBC) with positive LNs and of histological grade 3 <b>Data access</b> All data are openly available together with this data record in the file ‘LymphNodeMorphologicalAssessment_Liu.txt’ (table in tab-separated value format). The table contains count data for the assessment of morphological features of cancer-free and involved lymph nodes of hormone-receptor negative breast cancers. In addition, it lists tumor-infiltrating lymphocytes (TILs) scores, and detailed clinico-pathological data. <b>Corresponding author(s) for this study</b> Dr Anita Grigoriadis, Breast Cancer Now Unit, Innovation Hub, Cancer Center at Guy’s, Great Maze Pond, London, SE1 9RT, UK. Phone: +44 020 7188 2360. e-mail: anita.grigoriadis@kcl.ac.uk<br> <br> <b></b> <b>Study approval </b> Ethical clearance was obtained from the local research ethics committee (Medical Ethics Committee of Tianjin Medical University Cancer Institute and Hospital, Ek2020021).
DOI: 10.6084/m9.figshare.14784327
title: GSM4314897_SEC_Ni.bw

description: Dataset
DOI: 10.6084/m9.figshare.14784327.v2
title: GSM4314897_SEC_Ni.bw

description: Dataset
DOI: 10.6084/m9.figshare.14784327.v1
title: GSM4314897_SEC_Ni.bw

description: Dataset
DOI: 10.17028/rd.lboro.12881213
title: DrivAer Experimental Aerodynamic Dataset

description: This is a dataset for the 25% scale DrivAer model. Data was collected in the Large Wind Tunnel at Loughborough University, a 2.5m^2, closed working section, fixed ground open return tunnel.<br>The CAD geometry for the mounting hardware and the wind tunnel are all included in the dataset as ASCII .stl files, with the units in m. The CAD geometry of the DrivAer model has not been duplicated for this dataset.<br>Photos of the set up and some unique model dimensions are also included. The model was supplied by FKFS and is a 25% scale DrivAer model with three backs, the estate, fast and notchback variants. The model included the 5 spoke wheels, complex underbody, wing mirrors, the drivetrain, an open front grill and a porous radiator. As the model is not symmetric, in the engine bay and on the underside, it was set at a geometric 0 yaw condition as measured in the wind tunnel. This is estimated to be +/-0.1 degrees.<br>No corrections (for example blockage) have been applied to the data. All the data is presented in SI units and all measurements are from the origin (mid-track, mid-wheelbase on the tunnel floor) with x positive downstream and z positive up, using the right hand rule to find positive y.<br>The data is split into '_Mean' and '_Instantaneous' for each measurement type (Force, Pressure, Flow Field). All the data was taken during the same test session with a total sample time of 300 seconds typically and 100 seconds for the measurements in the stagnation region. The different data sets are not correlated with each other in time. The Force data was sampled at 300Hz, Pressure data at 260Hz and the Flow Field data at 5Hz. The data presented in the '_Mean' folders is the arithmetic mean of that presented in the '_Instantaneous' folders.<br> All the '_Mean' folders contain Comma Separated Variable (csv) files, for ease of parsing with your desired programming language, and the same data is provided in a .dat file that is set up to be read into TecPlot. The csv format was used to reduce size and complexity for the '_Instantaneous' data. Example MATLAB code has been provided (tested in 2018a) that reads both the '_Mean' and '_Instantaneous' csv files for the pressure and flow field measurements, plotting them accordingly.
DOI: 10.18170/dvn/jlzqlx
title: Growth Pattern of Dispersed Methane Hydrate in Brine-saturated Unconsolidated Sediment by Joint Velocity and Resistivity Analysis

description: Dataset for the figures constructed in the manuscript.
DOI: 10.17632/fpjpznrbt2.1
title: network simulation algorithms

description: Algorithms used for simulating diffusion models on synthetic networks
DOI: 10.5285/efc082aa-5c2b-4afb-aec8-344aebaea653
title: Carbon dioxide flux and isotopic composition from sedimentary rock weathering, Draix-Bleone Critical Zone Observatory, France

description: The measurements and data contained here were obtained to study the release of carbon dioxide during the chemical weathering of sedimentary rocks. The primary aim of the research was to explore how these CO2 fluxes were related to environmental parameters (temperature, hydrology). Weathering of sedimentary rocks can result in CO2 release from the oxidation of rock organic carbon oxidation, but also due to the oxidation of sulfide minerals, production of sulfuric acid and subsequent release of CO2 from carbonate minerals. These rock-derived carbon sources are understudied, and form an important part of the geological carbon cycle. The CO2 flux measurements were made on 5 rock chambers (H4, H6, H7, H8 and H13) installed in the Draix-Bleone Critical Zone Observatory, France, on outcrops of Jurassic marls. Measurements and data were collected from December 2016 to May 2019. Regular visits to the site (~4 per year) returned data on total CO2 flux (see data in Total-CO2-flux.csv). This was explored as a function of temperature and ambient hydroclimate (precipitation). The datasets include the total CO2 flux measured at each visit to a chamber, and measurements of the internal chamber temperature. To determine the source of CO2 measured in the chambers, we trapped the CO2 using zeolite sieves and recovered it in the laboratory. The radiocarbon activity (reported as fraction modern, F14C) and its stable isotope composition (d13C) were measured from CO2 collected from chambers H4 and H6 over the sampling period (Radiocarbon-data.csv). These measurements were used in a mixing analysis to partition the source of CO2 between rock organic carbon and carbonate using a mixing model approach (Partitioned-CO2-fluxes.csv), as explained in full detail in the published paper Soulet et al., 2021, Nature Geoscience. We also measured the geochemical characteristics of the bedrocks that are undergoing weathering at the field site (rock-geochemical-composition.csv), including the organic carbon concentration, inorganic carbon concentration and their isotopic composition, and sulfur concentration. Finally, we measured environmental variables of interest: the chamber temperature (chamber-temperature.csv) and the air temperature at the Draix-Bleone observatory (Air-temperature-at-laval-le-plateau-weather-station.csv, respectively). This research was funded by a European Research Council Starting Grant to Robert Hilton (ROC-CO2 project, grant 678779) and Radiocarbon and stable isotope measurements were funded by the Natural Environment Research Council (NERC), UK, (NERC National Environmental Isotope Facility NEIF Radiocarbon Allocation 2074.1017) to Guillaume Soulet, Robert Hilton and Mark Garnett. Full details of data analysis and interpretation can be found in Soulet et al., 2021, Temperature control on CO2 emissions from the weathering of sedimentary rocks, Nature Geoscience
DOI: 10.6084/m9.figshare.14784540.v1
title: GSM4314899_SEC_Id.bw

description: Dataset
DOI: 10.6084/m9.figshare.14784540
title: GSM4314899_SEC_Id.bw

description: Dataset
DOI: 10.5281/zenodo.4704531
title: Example metagenomic sequencing datasets for mOTUs profiling

description: Example dataset of 20 metagenomic sequencing datasets to be used for testing the mOTU profiler (https://motu-tool.org/).
DOI: 10.5281/zenodo.4704530
title: Example metagenomic sequencing datasets for mOTUs profiling

description: Example dataset of 20 metagenomic sequencing datasets to be used for testing the mOTU profiler (https://motu-tool.org/).
DOI: 10.5281/zenodo.4925962
title: Original data

description: Original data for paper -- Recovering 3D Basement Relief Using Gravity Data Through Convolutional Neural Networks The data include: synthetic data (symmetry model, asymmetry, and complex model ), case study. All of them include: the model (X, Y, Z), gravity station (xp, yp, zp), density contrast tho or the patameters of density contrast (aa bb cc dd). Case study data from USGS (Roberts, 2002)(U.S. Geological Survey). Its url is : https://pubs.usgs.gov/of/2002/0353/getdata.html Roberts, Carter, Jachens, Robert, Katzenstein, Allan, Smith, Gregory, Johnson, Russell, 2002, Gravity map and data of the eastern half of the Big Bear Lake, 100,000 scale quadrangle, California and analysis of the depths of several basins: U.S. Geological Survey Open-File Report 02 -353, <em>https://pubs.usgs.gov/of/2002/0353/</em>.
DOI: 10.5281/zenodo.4925961
title: Original data

description: Original data for paper -- Recovering 3D Basement Relief Using Gravity Data Through Convolutional Neural Networks The data include: synthetic data (symmetry model, asymmetry, and complex model ), case study. All of them include: the model (X, Y, Z), gravity station (xp, yp, zp), density contrast tho or the patameters of density contrast (aa bb cc dd). Case study data from USGS (Roberts, 2002)(U.S. Geological Survey). Its url is : https://pubs.usgs.gov/of/2002/0353/getdata.html Roberts, Carter, Jachens, Robert, Katzenstein, Allan, Smith, Gregory, Johnson, Russell, 2002, Gravity map and data of the eastern half of the Big Bear Lake, 100,000 scale quadrangle, California and analysis of the depths of several basins: U.S. Geological Survey Open-File Report 02 -353, <em>https://pubs.usgs.gov/of/2002/0353/</em>.
DOI: 10.6084/m9.figshare.14784567
title: Supplementary Material for: Zebrafish Minichromosome Maintenance Protein 5 Gene Regulates the Development and Migration of Facial Motor Neurons via Fibroblast Growth Factor Signaling

description: Minichromosome maintenance protein 5 (MCM5), a member of the microchromosomal maintenance protein family, plays an important role in the initiation and extension of DNA replication. However, its role in neural development in zebrafish remains unclear. Here, we used morpholino (MO) and CRISPR/Cas9 to knock down <i>mcm5</i> and investigated the developmental features of facial motor neurons (FMNs) in the hindbrain of zebrafish. We found that knockdown of <i>mcm5</i> using <i>mcm5</i> MO resulted in a small head, small eyes, and a blurred midbrain-hindbrain boundary, while MO injection of <i>mcm5</i> led to decrease in FMNs and their migration disorder. However, the mutant of <i>mcm5</i> only resulted in the migration defect of FMNs rather than quantity change. We further investigated the underlying mechanism of <i>mcm5</i> in the development of hindbrain using in situ hybridization (ISH) and <i>fgfr1a</i> mRNA co-injected with <i>mcm5</i> MO. Results from ISH showed that the fibroblast growth factor (FGF) signaling pathway was changed when the MCM5 function was lost, with the decrease in <i>fgfr1a</i> and the increase in <i>fgf8</i>, while that of <i>pea3</i> had opposite trend. FMN development defects were rescued by <i>fgfr1a</i> mRNA co-injected with <i>mcm5</i> MO. Our results demonstrated that FGF signaling pathway is required for FMN development in zebrafish. Specifically, <i>mcm5</i> regulates FMN development during zebrafish growing.
DOI: 10.6084/m9.figshare.14784567.v1
title: Supplementary Material for: Zebrafish Minichromosome Maintenance Protein 5 Gene Regulates the Development and Migration of Facial Motor Neurons via Fibroblast Growth Factor Signaling

description: Minichromosome maintenance protein 5 (MCM5), a member of the microchromosomal maintenance protein family, plays an important role in the initiation and extension of DNA replication. However, its role in neural development in zebrafish remains unclear. Here, we used morpholino (MO) and CRISPR/Cas9 to knock down <i>mcm5</i> and investigated the developmental features of facial motor neurons (FMNs) in the hindbrain of zebrafish. We found that knockdown of <i>mcm5</i> using <i>mcm5</i> MO resulted in a small head, small eyes, and a blurred midbrain-hindbrain boundary, while MO injection of <i>mcm5</i> led to decrease in FMNs and their migration disorder. However, the mutant of <i>mcm5</i> only resulted in the migration defect of FMNs rather than quantity change. We further investigated the underlying mechanism of <i>mcm5</i> in the development of hindbrain using in situ hybridization (ISH) and <i>fgfr1a</i> mRNA co-injected with <i>mcm5</i> MO. Results from ISH showed that the fibroblast growth factor (FGF) signaling pathway was changed when the MCM5 function was lost, with the decrease in <i>fgfr1a</i> and the increase in <i>fgf8</i>, while that of <i>pea3</i> had opposite trend. FMN development defects were rescued by <i>fgfr1a</i> mRNA co-injected with <i>mcm5</i> MO. Our results demonstrated that FGF signaling pathway is required for FMN development in zebrafish. Specifically, <i>mcm5</i> regulates FMN development during zebrafish growing.
DOI: 10.6084/m9.figshare.14784531
title: Supplementary Material for: Comparison between Cerebroplacental Ratio and Umbilicocerebral Ratio in Predicting Adverse Perinatal Outcome in Pregnancies Complicated by Late Fetal Growth Restriction: A Multicenter, Retrospective Study

description: <b><i>Introduction:</i></b> The role of cerebroplacental ratio (CPR) or umbilicocerebral ratio (UCR) to predict adverse intrapartum and perinatal outcomes in pregnancies complicated by late fetal growth restriction (FGR) remains controversial. <b><i>Methods:</i></b> This was a multicenter, retrospective cohort study involving 5 referral centers in Italy and Spain, including singleton pregnancies complicated by late FGR, as defined by Delphi consensus criteria, with a scan 1 week prior to delivery. The primary objective was to compare the diagnostic accuracy of the CPR and UCR for the prediction of a composite adverse outcome, defined as the presence of either an adverse intrapartum outcome (need for operative delivery/cesarean section for suspected fetal distress) or an adverse perinatal outcome (intrauterine death, Apgar score &lt;7 at 5 min, arterial pH &lt;7.1, base excess of &gt;−11 mEq/mL, or neonatal intensive care unit admission). <b><i>Results:</i></b> Median CPR absolute values (1.11 vs. 1.22, <i>p</i> = 0.018) and centiles (3 vs. 4, <i>p</i> = 0.028) were lower in pregnancies with a composite adverse outcome than in those without it. Median UCR absolute values (0.89 vs. 0.82, <i>p</i> = 0.018) and centiles (97 vs. 96, <i>p</i> = 0.028) were higher. However, the area under the curve, 95% confidence interval for predicting the composite adverse outcome showed a poor predictive value: 0.580 (0.512–0.646) for the raw absolute values of CPR and UCR, and 0.575 (0.507–0.642) for CPR and UCR centiles adjusted for gestational age. The use of dichotomized values (CPR &lt;1, UCR &gt;1 or CPR &lt;5th centile, UCR &gt;95th centile) did not improve the diagnostic accuracy. <b><i>Conclusion:</i></b> The CPR and UCR measured in the week prior delivery are of low predictive value to assess adverse intrapartum and perinatal outcomes in pregnancies with late FGR.
DOI: 10.6084/m9.figshare.14784531.v1
title: Supplementary Material for: Comparison between Cerebroplacental Ratio and Umbilicocerebral Ratio in Predicting Adverse Perinatal Outcome in Pregnancies Complicated by Late Fetal Growth Restriction: A Multicenter, Retrospective Study

description: <b><i>Introduction:</i></b> The role of cerebroplacental ratio (CPR) or umbilicocerebral ratio (UCR) to predict adverse intrapartum and perinatal outcomes in pregnancies complicated by late fetal growth restriction (FGR) remains controversial. <b><i>Methods:</i></b> This was a multicenter, retrospective cohort study involving 5 referral centers in Italy and Spain, including singleton pregnancies complicated by late FGR, as defined by Delphi consensus criteria, with a scan 1 week prior to delivery. The primary objective was to compare the diagnostic accuracy of the CPR and UCR for the prediction of a composite adverse outcome, defined as the presence of either an adverse intrapartum outcome (need for operative delivery/cesarean section for suspected fetal distress) or an adverse perinatal outcome (intrauterine death, Apgar score &lt;7 at 5 min, arterial pH &lt;7.1, base excess of &gt;−11 mEq/mL, or neonatal intensive care unit admission). <b><i>Results:</i></b> Median CPR absolute values (1.11 vs. 1.22, <i>p</i> = 0.018) and centiles (3 vs. 4, <i>p</i> = 0.028) were lower in pregnancies with a composite adverse outcome than in those without it. Median UCR absolute values (0.89 vs. 0.82, <i>p</i> = 0.018) and centiles (97 vs. 96, <i>p</i> = 0.028) were higher. However, the area under the curve, 95% confidence interval for predicting the composite adverse outcome showed a poor predictive value: 0.580 (0.512–0.646) for the raw absolute values of CPR and UCR, and 0.575 (0.507–0.642) for CPR and UCR centiles adjusted for gestational age. The use of dichotomized values (CPR &lt;1, UCR &gt;1 or CPR &lt;5th centile, UCR &gt;95th centile) did not improve the diagnostic accuracy. <b><i>Conclusion:</i></b> The CPR and UCR measured in the week prior delivery are of low predictive value to assess adverse intrapartum and perinatal outcomes in pregnancies with late FGR.
DOI: 10.20375/0000-000e-5968-a
title: all-data-files.zip
DOI: 10.20375/0000-000e-5969-9
title: codebook.pdf
DOI: 10.20375/0000-000e-596a-8
title: Composition-national-policy-communities.xlsx
DOI: 10.20375/0000-000e-596b-7
title: frames+cleavages.xlsx
DOI: 10.20375/0000-000e-596c-6
title: opinion-leaders.xlsx
DOI: 10.20375/0000-000e-596d-5
title: pipeline-attitude-by-domestic-actor-group.xlsx
DOI: 10.6084/m9.figshare.14784507
title: Supplementary Material for: Risk Factors Associated with Preterm Prelabor Rupture of Membranes after Cord Occlusion in Monochorionic Diamniotic Twins

description: <b><i>Introduction:</i></b> Preterm prelabor rupture of membranes (PPROM) is a common complication after fetal surgeries. The aim of this study was to assess risk factors for and outcomes after PPROM following cord occlusion (CO) in monochorionic diamniotic (MCDA) pregnancies. <b><i>Methods:</i></b> This was a retrospective cohort study of 188 consecutive MCDA pregnancies treated by bipolar or laser CO, either primarily because of discordant malformation (dMF) or severe selective fetal growth restriction (sFGR), or secondarily when complete bichorionization was not possible in case of twin-to-twin transfusion syndrome (TTTS) or sFGR. Intentional septostomy was performed when needed. The procedure-related PPROM was defined as rupture of membranes &lt;32 weeks’ gestation (PROM &lt;32 weeks). Selected pre-, intra-, and early postoperative variables were analyzed by univariate and binomial logistic regression to determine they are correlated to PROM &lt;32 weeks after CO. <b><i>Results:</i></b> Between 2006 and 2017, 188 cases underwent CO. Diagnosis was TTTS in 28.2% (<i>n</i> = 53), severe sFGR in 49.5% (<i>n</i> = 93), and dMF in 22.3% (<i>n</i> = 42). PROM &lt;32 weeks occurred in 21.3% (<i>n</i> = 40), resulting in worse perinatal outcomes, as preterm birth &lt;32 weeks occurred in 80.7% (vs. 8.3%, <i>p</i> = 0.000), procedure-to-delivery interval was 47.5 days (vs. 125, <i>p</i> = 0.000), gestational age (GA) at birth 30.0 weeks (vs. 37.7 weeks, <i>p</i> = 0.000), and survival 65.0% (vs. 91.1%, <i>p</i> = 0.000). In univariate analysis, indication, anterior placenta, cervical length, GA at surgery, operation time, amniodistention and drainage fluid volumes, chorioamniotic membrane separation, and septostomy were selected as relevant factors to be included in the regression model. In a multivariate analysis, TTTS was the only factor associated to PROM &lt;32 weeks (OR 3.5 CI 95% 1.5–7.9). <b><i>Conclusions:</i></b> PROM &lt;32 weeks after CO increases the risk of preterm delivery. In this cohort, the membrane rupture was more likely when CO was done in the context of TTTS.
DOI: 10.48320/fe8f80fc-af2c-4b0a-a754-c2b4e450b60d
title: Debates about export pipelines from the post-Soviet region: Opinion leaders and advocacy coalitions
DOI: 10.6084/m9.figshare.14784519
title: Extraction and Comparison of Remote Sensing Lineament Based on Spectral Characteristics Analysis

description: 4 kinds of remote sensing imagery
DOI: 10.6084/m9.figshare.14784519.v1
title: Extraction and Comparison of Remote Sensing Lineament Based on Spectral Characteristics Analysis

description: 4 kinds of remote sensing imagery
DOI: 10.5281/zenodo.4896533
title: Tertullian's "De spectaculis" annotated according to the WoPoss guidelines

description: This dataset contains <em>De spectaculis </em>by Tertullian as annotated by Séverine Reymond and reviewed by Francesca Dell’Oro in INCEpTION. This dataset follows the <em>WoPoss guidelines for annotation </em>(doi:10.5281/zenodo.3560951). Please notice that this is not the final annotated file: it is the result of the automatic annotation of linguistic features and the manual annotation of modal passages. More metadata and corrections will be added later on. To visualise the annotation: Download the file. Go to the INCEpTION demo website. After logging in, go to the right upper corner and, in “Import project files”, select the file you downloaded in step 1 (it must be a zip file: if your browser/operating system decompresses the folder by default, compress it as a .zip file). Then click on “Upload selected files”. Once the project was correctly imported, pay attention to green pop-up at the left bottom corner stating the name of the uploaded project (as default the name is “copy_of_WoPoss” but if other users have previously uploaded and not deleted the file, the name will change to avoid a rewriting). Select it on the list of projects to open it. Go to “Annotation” to overview the semantic annotation of <em>De spectaculis</em>. After you finish, you may go back to the dashboard (upper menu), select “Settings” and click of the red button “Delete” (upper right corner).