cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qwsdar
title: Occurrence Download

description: A dataset containing 4119 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ambrosia deltoidea (Torr.) W.W.Payne"
 ]
}

 The dataset includes 4119 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001525-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zb3jv3
title: Occurrence Download

description: A dataset containing 916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abrus precatorius L., Acanthospermum hispidum DC., Azadirachta indica A.Juss., Calotropis procera (Aiton) W.T.Aiton, Chromolaena odorata (L.) R.M.King & H.Rob., Cyperus rotundus L., Launaea intybacea (Jacq.) Beauverd, Leucaena leucocephala (Lam.) de Wit, Mimosa pigra L., Pergularia tomentosa L., Pontederia crassipes Mart., Prosopis juliflora (Sw.) DC.)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Country is one of (Niger)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 916 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001527-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qa7p2z
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "Country is one of (China, Hong Kong, Macao, Chinese Taipei)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Elodea densa (Planch.) Casp."
 ]
}

 The dataset includes 212 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001529-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28171166
title: Full information on functional annotation added using Fanflow

description: Full information on functional annotation added using Fanflow
DOI: 10.5281/zenodo.15062735
title: A decade of patterns and temporal trends of global soil microbial diversity
DOI: 10.5281/zenodo.15081342
title: A decade of patterns and temporal trends of global soil microbial diversity
DOI: 10.5281/zenodo.15062736
title: A decade of patterns and temporal trends of global soil microbial diversity
DOI: 10.17871/atto.306.3.1240
title: Fraction modern 14C of a dominant Amazon palm species

description: Fraction Modern (FM) 14C data from five live individuals of Oenocarpus bataua Mart. (ARECACEAE) harvested in a Central Amazon old-growth forest. Structural tissues were acquired using destructive sampling carried in July 2018. Radial cuts at different heights were cleaned and polished to remove potential surface contaminants before cutting samples of approximately 1 cm3. Final samples were subjected to acid-base-acid treatment to remove non-structural compounds, then combusted to CO2 and converted to graphite for 14C measurement by the accelerator mass spectrometry by the WM Keck Carbon Cycle AMS Facility at the University of California, Irvine, US.
DOI: 10.15468/dl.n33t96
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phytoseiulus longipes Evans, 1958"
 ]
}

 The dataset includes 18 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001530-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24770031
title: <b>Appendix S2.</b> Database with included and excluded articles and the main reasons for the decision.

description: <b>Appendix S2.</b> Database with included and excluded articles and the main reasons for the decision.
DOI: 10.6084/m9.figshare.24770031.v1
title: <b>Appendix B.</b> Database with included and excluded articles and the main reasons for the decision.

description: <b>Appendix S2.</b> Database with included and excluded articles and the main reasons for the decision.
DOI: 10.6084/m9.figshare.24770031.v2
title: <b>Appendix S2.</b> Database with included and excluded articles and the main reasons for the decision.

description: <b>Appendix S2.</b> Database with included and excluded articles and the main reasons for the decision.
DOI: 10.5281/zenodo.10823565
title: draft data for the red flour beetle
DOI: 10.5281/zenodo.10823566
title: How does animal personality influence male mating behaviour and reproductive fitness in the red flour beetle?
DOI: 10.5281/zenodo.14093674
title: draft data for the red flour beetle
DOI: 10.15468/dl.wcc94q
title: Occurrence Download

description: A dataset containing 59 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen, Occurrence evidence)",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Salsola monoptera Bunge"
 ]
}

 The dataset includes 59 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001531-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n89qes
title: Occurrence Download

description: A dataset containing 135714 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.7.30_2"
 ]
}

 The dataset includes 135714 records from 311 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001519-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60507/fk2/ffpgja
title: Confocal live cell images of microglia in 3D cell culture from the dissertation ' 3D culture conditions instruct an in vivo-like phenotype in primary microgia'

description: Microglia are innate immune cells of the central nervous system. They possess a diverse range of morphological features that enable them to perform different functions, such as surveillance, phagocytosis and immune response. In response to changes in physiological conditions within the CNS, microglia actively alter their shape in order to maintain brain homeostasis. 
Previous studies on the morphology and function of microglia have been conducted in 2D cell culture systems, which have been associated with an artificial morphology in microglia and altered microglial functions. Consequently, there is an increasing imperative to develop 3D cell culture systems that can more accurately replicate the complex microenvironment of the brain. The present study aims to investigate the impact of defined 3D cell culture conditions on gene expression, morphology, cell motility, innate immune response, and electrophysiological properties of cultured primary murine microglia. 
To this end, live cell confocal microscopy imaging was employed to visualise microglia within a 3D cell culture environment, thereby enabling the study of their motility, morphology and phagocytosis.The findings of this study demonstrate that microglia develop a more in vivo-like morphology and surveillance motility when cultured under 3D compared to 2D conditions.
DOI: 10.60507/fk2/ffpgja/7flksk
title: Figure 17A. Microglial cell-matrix interaction in 3D culture.

description: Representative confocal time-lapse images of 3D matrix fibers (silver) and Cx3cr1-GFP microglia (green). To explore possible microglial cell-matrix interactions in our 3D culture, we utilized a combination of fluorescent and confocal reflection microscopy techniques to visualize the interaction between microglia and the ECM. Time-lapse confocal z-stack images of eGFP microglia with z-slice of 0.5 um over 10 minutes with a time frame of 30 s were obtained. Confocal reflection microscopic grayscale images of the 3D gel matrix structure were simultaneously imaged using a 633 nm laser. We observed interactions between microglial cell branching processes and 3D matrix fibers (Figure 17A). Microglia constantly extended their branching processes to make several contacts with matrix fibers in 3D culture (Figure 17A). This illustrates a bidirectional cell-matrix fiber interaction; potentially promoting the more branched and ramified morphology of microglia seen in our 3D cell culture system.
DOI: 10.60507/fk2/ffpgja/avicfr
title: Figure 18B. Analysis of time-lapse confocal images of microglia in 2D and 3D culture

description: Representative confocal time-lapse images of microglia culture in 3D over 10 minutes.
We investigated microglial motility in 3D culture. To achieve this, we obtained time-lapse images of microglia using a high-resolution spinning disk confocal microscope equipped with a 60x water immersion objective. A time frame of 30s per image over 10 min with a z-slice interval of 0.5 µm was used to record the motility of microglia in 2D and 3D cultures. We observed that microglia in 3D culture showed a ramified morphology with constant extensions and retractions of processes reminiscent of in vivo-like microglial surveillance (Figure 18A and B). In contrast, microglia in 2D culture showed an amoeboid morphology with membrane ruffling (Figure 18B ).
DOI: 10.60507/fk2/ffpgja/he5p3t
title: Figure 22A. Microglia motility during phagocytosis.

description: Representative confocal time-lapse images of migrating microglia during phagocytosis for 24 hours in 2D culture. To investigate whether microglial cells migrate during phagocytosis in 3D culture, confocal z-stack time-lapse images were obtained for a period of 24 h at 15 min intervals. We observed that microglial cells migrated less during phagocytosis in 3D cultures compared to 2D cultures (Figure 22A).
DOI: 10.60507/fk2/ffpgja/hhrcl3
title: Bertrand_Tambe_3D_microglia_readme.txt
DOI: 10.60507/fk2/ffpgja/kzcyqi
title: Figure 21B. Microglial phagocytic assay in 3D culture

description: Representative confocal time-lapse images of microglia phagocytosis in 3D culture. Green = Cx3cr1-GFP microglia, blue = 2 um beads. To establish a microglial phagocytic assay in 3D culture, microglial cells were cultured with 2 µm polystyrene beads in Matrigel-collagen gel. The cell-matrix mixture was allowed to solidify at room temperature for 15 min and then at 37°C for 15 min. Confocal z-stack time-lapse images were obtained for a period of 24 h in 15 min intervals. In 3D culture, microglia phagocytosed beads through their ramified main branching processes and cell bodies (Figure 21B). In contrast, 2D microglia phagocytosed beads mainly with their amoeboid cell bodies (Figure21B).
DOI: 10.60507/fk2/ffpgja/n9snzt
title: Figure 21A. Microglial phagocytic assay in 3D culture

description: Representative confocal time-lapse images of microglia phagocytosis in 2D culture. Green = Cx3cr1-GFP microglia, blue = 2 um beads.
To establish a microglial phagocytic assay in 3D culture, microglial cells were cultured with 2 µm polystyrene beads in Matrigel-collagen gel. The cell-matrix mixture was allowed to solidify at room temperature for 15 min and then at 37°C for 15 min. Confocal z-stack time-lapse images were obtained for a period of 24 h in 15 min intervals. In 3D culture, microglia phagocytosed beads through their ramified main branching processes and cell bodies (Figure 21A). In contrast, 2D microglia phagocytosed beads mainly with their amoeboid cell bodies (Figure21 A).
DOI: 10.60507/fk2/ffpgja/sdjhqn
title: Figure 22B. Microglia motility during phagocytosis.

description: Representative confocal time-lapse images of migrating microglia during phagocytosis for 24 hours in 3D culture. To investigate whether microglial cells migrate during phagocytosis in 3D culture, confocal z-stack time-lapse images were obtained for a period of 24 h at 15 min intervals. We observed that microglial cells migrated less during phagocytosis in 3D cultures compared to 2D cultures (Figure 22B).
DOI: 10.60507/fk2/ffpgja/shyubx
title: Figure 18A. Analysis of time-lapse confocal images of microglia in 2D and 3D culture

description: Representative confocal time-lapse images of microglia culture in 2D culture over 10 minutes.
We investigated microglial motility in 3D culture. To achieve this, we obtained time-lapse images of microglia using a high-resolution spinning disk confocal microscope equipped with a 60x water immersion objective. A time frame of 30s per image over 10 min with a z-slice interval of 0.5 µm was used to record the motility of microglia in 2D and 3D cultures. We observed that microglia in 3D culture showed a ramified morphology with constant extensions and retractions of processes reminiscent of in vivo-like microglial surveillance (Figure 18A and B). In contrast, microglia in 2D culture showed an amoeboid morphology with membrane ruffling (Figure 18A ).
DOI: 10.15468/dl.tyjn57
title: Occurrence Download

description: A dataset containing 1725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Material sample, Specimen)",
 "Geometry POLYGON((-180 -90,180 -90,180 -40,-180 -40,-180 -90))",
 "TaxonKey is Dissostichus eleginoides Smitt, 1898",
 "Year 1985-2014"
 ]
}

 The dataset includes 1725 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001533-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28658420
title: vet-lirn-amr-database-2017-2022.xlsx.zip

description: <b>Abstract</b><b>Background</b><br>Antimicrobial Resistance (AMR) is a major global health challenge, particularly in Africa, where antibiotic misuse worsens resistance. This study aims to identify potential drug targets in imipenem-resistant <i>E. coli</i> isolates from the Vet-LIRN database through a four-phase approach integrating interactive GIS analysis, genomic data analysis, subtractive genomics, and druggability assessments.<b>Methods</b><br>Phase I involved a literature review and the creation of interactive Geographical Information System (GIS) dashboards to examine resistance patterns for Ampicillin, Minocycline, and Imipenem across North America and Africa, using data from the ATLAS and Vet-LIRN databases. Phase II focused on genomic analysis of resistant and susceptible <i>E. coli</i> isolates to identify non-synonymous mutations linked to imipenem resistance. Phase III applied subtractive genomics to identify essential bacterial proteins unique to <i>E. coli</i> and absent in humans and dogs. Phase IV assessed the druggability of these proteins by matching with proteins in DrugBank, and interactions of the matched proteins with drugs in the DrugBank database.<b>Results</b><br>GIS analysis revealed significant geographical variations in resistance, with Africa showing higher resistance to Ampicillin (80%) compared to North America (55%). Genomic analysis identified 337 proteins in the imipenem-resistant <i>E. coli</i> isolates, with 68 considered potential drug targets. Of these, 29 proteins were homologous to DrugBank proteins that interacted with over 1,000 drugs. The cell wall/membrane protein group matched with over 80 drugs, metabolic enzymes group with 166 drugs, transport-related proteins group with more than 700 drugs, regulatory proteins with 1 drug, and DNA methylation/epigenetic proteins group with several drugs.<b>Conclusions</b><br>This study demonstrates that integrating GIS, genomics, substractive genomics, and druggability assessments enhances AMR research and provides a framework for identifying novel drug targets. The matched proteins in DrugBank interacting with over 1,000 drugs offer potential for drug repurposing, particularly against imipenem-resistant <i>E. coli</i> and other multidrug-resistant pathogens.
DOI: 10.6084/m9.figshare.28171271
title: Differences of gene model between our assembly and Ensembl assembly

description: Differences of gene model between our assembly and Ensembl assembly
DOI: 10.17871/atto.300.3.1213
title: Mixing ratios of isoprene and isoprene oxidation products in 80, 150 and 325m

description: Mixing ratios of isoprene (m/z 60.069) and isoprene oxidation products (m/z 71.049), including methyl vinyl ketone, methacrolein and ISOPOOH measured with the PTR-TOF-MS (PTR 4000) at the ATTO tower profile (80, 150, 325m)
DOI: 10.15468/dl.7646z3
title: Occurrence Download

description: A dataset containing 55033 species occurrences available in GBIF matching the query:
{
 "GadmGid" : [
 "is MEX.7.4_2"
 ]
}

 The dataset includes 55033 records from 277 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001528-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gr2wgu
title: Occurrence Download

description: A dataset containing 316 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Diospyros rhombifolia Hemsl.",
 "Year 1903-2025"
 ]
}

 The dataset includes 316 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001534-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.57755/b7gt-db65
title: Sondaż ogólnopolski mieszkańców

description: <p><span style="font-size:12.04px">Plik zapisany w programie spss zawiera wyniki ogólnopolskiego sondażu mieszkańców przeprowadzonego przez PBS Sopot w grudniu 2022 r. Badanie dotyczyło postrzegania władzy lokalnej przez mieszkańców i stylów lokalnego przywództwa politycznego, poszczególne pytania są dokładnie opisane w etykietach zmiennych</span></p><p>The file has been save as spss file. It includes results of the survey of representative sample of Polish population, conducted by PBS Sopot in December 2022. The study focus on citizens&#39; perception of local authorities&#39; acitivities and styles of political leadership. Individual questions are described in details in variable labels</p>
description: <p>Sondaż oóglnopolski na reprezentatywnej próbie mieszkańców. Dane zebrane metodą CAWI z własnego panelu badawczego PBS</p>
DOI: 10.15468/dl.r726c3
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Ambrosia dentata (Cabrera) M.O.Dillon"
 ]
}

 The dataset includes 12 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001535-250324175209820/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15081412
title: Tabular Synthetic Benchmark Small Dataset

description: Tabular Synthetic Benchmark Small Dataset with 150 rows
DOI: 10.5281/zenodo.15081413
title: Tabular Synthetic Benchmark Small Dataset

description: Tabular Synthetic Benchmark Small Dataset with 150 rows
DOI: 10.18419/darus-4750
title: The 11th SPE Comparative Solution Project: Submitted Data

description: &lt;p&gt;
Data submitted to the 11th Society of Petroleum Engineers Comparative Solution Project. Contains the sparse and dense data files of 77 results submitted by 18 participating groups for three cases SPE11A-C. Each zip file contains one such result, where the name spe&lt;i&gt;X&lt;/i&gt;_&lt;i&gt;NAME&lt;/i&gt;&lt;i&gt;Y&lt;/i&gt;.zip indicates Result &lt;i&gt;Y&lt;/i&gt; for Case SPE11&lt;i&gt;X&lt;/i&gt; of Participant &lt;i&gt;NAME&lt;/i&gt;.
&lt;/p&gt;&lt;p&gt;
Unpacking a result file yields one sparse data file spe&lt;i&gt;X&lt;/i&gt;_time_series.csv, several dense data files spe&lt;i&gt;X&lt;/i&gt;_spatial_map_&lt;i&gt;TIME&lt;/i&gt;.csv, and, optionally, performance data files. A sparse data file contains the evolution of several scalar quantities over time, while a dense data file contains the spatial distribution of several scalar quantities at a particular reporting time step. For more information, see the related publication.
&lt;/p&gt;&lt;p&gt;
The results can be processed by the scripts provided in the repository &lt;a href="https://github.com/Simulation-Benchmarks/11thSPE-CSP"&gt;github.com/Simulation-Benchmarks/11thSPE-CSP&lt;/a&gt;. From the repository's website, access to a Jupyter Hub is enabled that allows to run the scripts on the full dataset.
&lt;/p&gt;
DOI: 10.4121/c6f51db7-b3fb-406d-b7a4-970e4ac1444b
title: Data underlying Chapter 3 of the PhD thesis: Chemical Imaging Methods for Cultural Heritage: Advanced Data Acquisition and Processing

description: *** L.M. de Almeida Nieto Dissertation Chapter 3: SHAP-RIS: Reflectance imaging spectroscopy and interpretable machine learning for the analysis of historical manuscripts Related Data***Authors: L.M. de Almeida Nieto, L.G. Migas, M. Vermeulen, J. Dik, M. Alfeld, R. Van de PlasMaterials Science and Engineering Department, Faculty of Mechanical Engineering, DelftUniversity of TechnologyCorresponding author: L.M. de Almeida NietoContact Information:luisdealmeida95@gmail.comDelft University of Technology - Faculty of Mechanical EngineeringThe Netherlands<br>***General Introduction***This dataset contains all the data relevant to Chapter 3 of L.M. de Almeida Nieto's doctoral dissertation, collected between 2020 and 2024.The data in this data set was collected in the Leiden University Library (Leiden, Netherlands) and the UK National Archives (London, United Kingdom).This research project was made possible by by funding from TU Delft.<br>***Purpose of the test campaign***The purpose of these experiments was to evaluate the potential of VNIR RIS for the analysis of damaged historical manuscripts.<br>***Test equipment***Leiden Riddle data was acquired using a Specim IQ hyperspectral camera.Locke Manuscript data was acquired using a Headwall Photonics MV.C VNIR hyperspectral camera.
DOI: 10.4121/c6f51db7-b3fb-406d-b7a4-970e4ac1444b.v1
title: Data underlying Chapter 3 of the PhD thesis: Chemical Imaging Methods for Cultural Heritage: Advanced Data Acquisition and Processing

description: *** L.M. de Almeida Nieto Dissertation Chapter 3: SHAP-RIS: Reflectance imaging spectroscopy and interpretable machine learning for the analysis of historical manuscripts Related Data***Authors: L.M. de Almeida Nieto, L.G. Migas, M. Vermeulen, J. Dik, M. Alfeld, R. Van de PlasMaterials Science and Engineering Department, Faculty of Mechanical Engineering, DelftUniversity of TechnologyCorresponding author: L.M. de Almeida NietoContact Information:luisdealmeida95@gmail.comDelft University of Technology - Faculty of Mechanical EngineeringThe Netherlands<br>***General Introduction***This dataset contains all the data relevant to Chapter 3 of L.M. de Almeida Nieto's doctoral dissertation, collected between 2020 and 2024.The data in this data set was collected in the Leiden University Library (Leiden, Netherlands) and the UK National Archives (London, United Kingdom).This research project was made possible by by funding from TU Delft.<br>***Purpose of the test campaign***The purpose of these experiments was to evaluate the potential of VNIR RIS for the analysis of damaged historical manuscripts.<br>***Test equipment***Leiden Riddle data was acquired using a Specim IQ hyperspectral camera.Locke Manuscript data was acquired using a Headwall Photonics MV.C VNIR hyperspectral camera.