cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17608/k6.auckland.21350790
title: In vivo experimental evolution of ICC180, a bioluminescent derivative of the mouse enteropathogen Citrobacter rodentium

description: In these experiments, we set up 10 transmission chains in which <em>C. rodentium</em> transmitted naturally from mouse to mouse. Experiments were performed as described in the collection provided on Protocols.io (1). In addition, nalidixic acid was added as a treatment for five of the transmission chains. To do this, mice were given nalidixic acid in their drinking water at a final concentration of 10 ug/mL. This water was changed every 2-3 days, adding fresh nalidixic acid each time. <br> This dataset contains the weights (g), bacterial viability (as colony forming units [CFU] per gram of stool and as relative light units per gram of stool), and bioluminescence from abdomen and rectum (as photons per second). <br> 1. Read, Patel, & Wiles (2022). Initiating and monitoring natural infection of mice by bioluminescent Citrobacter rodentium. protocols.io. https://www.protocols.io/view/initiating-and-monitoring-natural-infection-of-mic-81wgb6qnnlpk/v1
DOI: 10.17608/k6.auckland.21350790.v1
title: In vivo experimental evolution of ICC180, a bioluminescent derivative of the mouse enteropathogen Citrobacter rodentium

description: In these experiments, we set up 10 transmission chains in which <em>C. rodentium</em> transmitted naturally from mouse to mouse. Experiments were performed as described in the collection provided on Protocols.io (1). In addition, nalidixic acid was added as a treatment for five of the transmission chains. To do this, mice were given nalidixic acid in their drinking water at a final concentration of 10 ug/mL. This water was changed every 2-3 days, adding fresh nalidixic acid each time. <br> This dataset contains the weights (g), bacterial viability (as colony forming units [CFU] per gram of stool and as relative light units per gram of stool), and bioluminescence from abdomen and rectum (as photons per second). <br> 1. Read, Patel, & Wiles (2022). Initiating and monitoring natural infection of mice by bioluminescent Citrobacter rodentium. protocols.io. https://www.protocols.io/view/initiating-and-monitoring-natural-infection-of-mic-81wgb6qnnlpk/v1
DOI: 10.34740/kaggle/dsv/4343744
title: BBC News
DOI: 10.6084/m9.figshare.21341730
title: Data S1 for Aerosol Iron Solubility Specification in Global Marine Atmosphere with Machine Learning

description: Data S1：Dataset of aerosol Fe solubility simulated by the DLNN model based on the contents of total Fe, sulfate, nitrate, and oxalate in aerosol particles, the particle size, and air relative humidity in the ranges of actual atmosphere worldwide. The concentration range of total Fe in global aerosols is 0.1-86000 ng m<sup>-3 [1-5]</sup>. In the preparation of the dataset, the whole range are divided into six intervals with different increments according to the occurrence frequency of total Fe concentration in aerosols, namely, 0.1-1 ng m<sup>-</sup><sup>3</sup> with an increment of 0.1 ng m<sup>-3</sup>; 1-10 ng m<sup>-3</sup> with an increment of 1 ng m<sup>-3</sup>; 10-200 ng m<sup>-3</sup> with an increment of 10 ng m<sup>-3</sup>; 200-1000 ng m<sup>-3</sup> with an increment of 100 ng m<sup>-3</sup>; 1000-2000 ng m<sup>-3</sup> with an increment of 500 ng m<sup>-3</sup>, and 2000-86000 ng m<sup>-3</sup> with an increment of 2000 ng m<sup>-3</sup>. The concentration ranges of sulfate and nitrate in aerosol particles are 0-110 μg m<sup>-3</sup> and 0-70 μg m<sup>-3</sup>, respectively, and the maxima are the average concentrations observed under severe haze conditions in the city of Xi'an in China<sup> [6]</sup>. The increment for both salts is 5 μg m<sup>-3</sup>. The range of oxalate is 0-2 μg m<sup>-3</sup>, and its maximum is the maximum value from observations in Qingdao, China<sup>[7]</sup>. The size range of particles has nine intervals: ≤0.43, 0.43–0.65, 0.65–1.1, 1.1–2.1, 2.1–3.3, 3.3–4.7, 4.7–7.0, 7.0–11, and &gt;11 μm, and the corresponding particle size was set 0.1, 0.54, 0.875, 1.6, 2.7, 4.0, 5.85, 9.0, 55.5 μm, respectively. Relative humidity is 10-100% with an increment of 5%. Considering all combinations of the values of the six factors, Fe solubility in each case was simulated by the DLNN model constructed in the paper “Aerosol Iron Solubility Specification in Global Marine Atmosphere with Machine Learning”. The dataset includes 59,053,994 sets of data and the total size is about 2.3 G. All data is stored in 60 separated files.csv. Fe solubility in this dataset is simulated by the DLNN model trained using Qingdao data, which is applicable to most worldwide seas and margin areas except the Atlantic Ocean. The simulated Fe solubility over the Atlantic Ocean is available from authors. References [1] Sholkovitz et al. Geochimica et Cosmochimica Acta, 2012,89:173-189. [2] Takahashi et al. Atmospheric Chemistry and Physics, 2013,13(15):7695-7710. [3] Longo et al. Environmental science & technology, 2016,50,6912–6920. [4] Mahowald et al. Nature communications, 2018,9(1). DOI:10.1038/s41467-018-04970-7 [5] Shelley et al. Biogeosciences, 2018,15(8):2271-2288. [6] Shen et al. Atmospheric Environment, 2009,43(18):2911-2918. [7] Zhang et al. Environmental Science, 2018,39(4):1512-1519 (in Chinese with English abstract).
DOI: 10.5281/zenodo.6825419
title: Matroids with 9 elements

description: This dataset contains the 385370 pairwise non-isomorphic matroids from 0 to 9 elements inclusive. Each matroid is given as a text string occupying one line of the file matroids09_rankLine. Except for the empty matroid, the text string gives the rank of every subset of the groundset (as described in more detail in the readme.md file), and so is called the rankline of the matroid. This establishes a de-facto numbering scheme for the matroids, starting with M0 (the empty matroid) and ending with M385369 (the uniform matroid U(9,9)). For example, M298 is the number for the Fano plane, and its rankLine occurs on line 298 (counting from 0) of the file. Various published papers in matroid theory have already referred to specific matroids using the M-numbers obtained from this catalogue. This dataset is provided as a "reference version" of the catalogue to permit researchers, both now and into the future, to safely use M-numbers as unique and unchanging identifiers to refer to any matroid on up to 9 elements.
DOI: 10.5281/zenodo.6825418
title: Matroids with 9 elements

description: This dataset contains the 385370 pairwise non-isomorphic matroids from 0 to 9 elements inclusive. Each matroid is given as a text string occupying one line of the file matroids09_rankLine. Except for the empty matroid, the text string gives the rank of every subset of the groundset (as described in more detail in the readme.md file), and so is called the rankline of the matroid. This establishes a de-facto numbering scheme for the matroids, starting with M0 (the empty matroid) and ending with M385369 (the uniform matroid U(9,9)). For example, M298 is the number for the Fano plane, and its rankLine occurs on line 298 (counting from 0) of the file. Various published papers in matroid theory have already referred to specific matroids using the M-numbers obtained from this catalogue. This dataset is provided as a "reference version" of the catalogue to permit researchers, both now and into the future, to safely use M-numbers as unique and unchanging identifiers to refer to any matroid on up to 9 elements.
DOI: 10.18141/1890655
title: FutureGen2 Petrel Project

description: This Petrel project features geomechanical models that takes advantage of existing modeling work from PNNL and expands upon its framework to included overlying and underlying geologic zones. Where available, geomechanical logs were incorporated into these models. While the existing CO2 storage interval and caprock (Mt. Simon Ss and Eau Claire Shale) were finely layered by PNNL, the overlying layers were more coarsely layered to limit cell count.
DOI: 10.18141/1890663
title: Perch Area Petrel Project

description: The SEM in this Petrel project is based, in part, on an earlier model prepared at Battelle (1) that covers Michigan's Northern Pinnacle Reef trend. While the existing SEM focused on the Niagaran section, this Petrel project expands the framework to included overlying and underlying geologic zones. Where available, geomechanical logs were incorporated into the model.
DOI: 10.18141/1890664
title: FutureGen VSP

description: Processed SEGY files from the FutureGen2 project. Data includes 5 categories of OVSP data with 15 lines in each category (all in TWT). VSP data was processed from Sterling Seismic.
DOI: 10.18141/1890665
title: Well Logs: A Non-Invasive Approach for Elucidating the Spatial Distribution of In-Situ Stress in Deep Subsurface Geologic Formations Considered for CO2 Storage

description: Routine and geomechanical well logs for 3 wells— State Otsego Lake 8-15A, Lawnichak 9-33, Chester 8-16.
DOI: 10.18141/1890935
title: Task 5 Field Scale Stress Modeling Scripts and Data

description: Project data and Matlab scripts for Task 5 of the project “A Non-Invasive Approach for Elucidating the Spatial Distribution of In Situ Stress in Deep Subsurface Geologic Formations Considered for CO2 Storage”. Project includes the static earth models, grids and other data used for simulation and calibration of the two case studies addressed in the project, referred to herein as the “FutureGen2” model (Illinois) and the “Perch” model (Otsego county, Michigan). Large Dataset, please contact EDXSupport@netl.doe.gov
DOI: 10.18141/1890936
title: Perch 3D

description: Processed SEGY files from the Perch 3D seismic area in the Michigan Basin. Data was used to make estimates of the stress field in the study area. Data was processed from Texseis, Inc.
DOI: 10.5281/zenodo.7218080
title: Potassium Isotopes in Herbaceous Plants: a Potential New Tool for C3 and C4 Plant

description: Dataset of Journal article titled "Potassium Isotopes in Herbaceous Plants: a Potential New Tool for C<sub>3</sub> and C<sub>4</sub> Plant" published in Journal of Geophysical Research - Biogeosciences.
DOI: 10.5281/zenodo.7218079
title: Potassium Isotopes in Herbaceous Plants: a Potential New Tool for C3 and C4 Plant

description: Dataset of Journal article titled "Potassium Isotopes in Herbaceous Plants: a Potential New Tool for C<sub>3</sub> and C<sub>4</sub> Plant" published in Journal of Geophysical Research - Biogeosciences.
DOI: 10.5439/1892481
title: camharbormovie (a1)

description: camharbormovie
DOI: 10.5439/1892482
title: camharbor (a1)

description: camharbor
DOI: 10.5439/1892484
title: camtower (a1)

description: camtower
DOI: 10.5439/1892485
title: camtowermovie (a1)

description: camtowermovie
DOI: 10.5439/1892486
title: camskyrad (a1)

description: camskyrad
DOI: 10.5439/1892489
title: icerad (00)

description: The portable radiation package (PRP) is an instrument suite to collect atmospheric radiation measurements on a moving platform. The instrument suite consists of a precision spectral pyranometer (PSP), precision infrared radiometer (PIR), and continuously rotating shadowband radiometer.
DOI: 10.25982/128174.5/1893104
title: KBase Narrative - kb_DRAM P. normanii annotation with model

description: Here we are annotating a P. normanii metagenome assembled genome using both DRAM and RAST then using those annotations to build models. The genome is from NCBI genome ID GCA_000398025.1
DOI: 10.25982/103341.23/1893106
title: KBase Narrative - kb_DRAM E. coli annotation

description: Here we are annotating a E. coli K-12 genome using both DRAM and RAST then using those annotations to build models. The genome is from NCBI RefSeq ID NC_000913.
DOI: 10.7799/1893111
title: Results from "Charging Needs for Electric Semi-Trailer Trucks"

description: This data set includes modeling results from “Charging Needs for Electric Semi-Trailer Trucks” including charging demand distributions and charging speed requirements for the multiple scenarios and semi-trailer truck operating segments described in the study. Please cite as: Borlaug, B., Moniot, M., Birky, A., Alexander, M., and Muratori, M., Charging needs for electric semi-trailer trucks, Renew. Sust. Energ. Transit. (2022), 2, https://doi.org/10.1016/j.rset.2022.100038.
DOI: 10.5281/zenodo.7130562
title: PLAINE ship wave drawdowns from XBeach model

description: Processed model output with runup and drawdown from running different ship types. The first set of files are for Lac St-Pierre. 294m x 32.2m container ship (Runup_drawdown_parametric_MtlExpress) 229m x 32m tanker (Runup_drawdown_parametric_Tanker.nc) 187m x 32.2m bulk carrier (Runup_drawdown_parametric_BulkCarrier.nc) Eventually, additional files will be uploaded for the other sites as they become available.
DOI: 10.6084/m9.figshare.21350967
title: S1 Table

description: <strong>Primers for basic recombinase polymerase amplification (RPA) of </strong><em><strong>ipaH</strong></em><strong>.</strong>
DOI: 10.6084/m9.figshare.21350967.v1
title: S1 Table

description: <strong>Primers for basic recombinase polymerase amplification (RPA) of </strong><em><strong>ipaH</strong></em><strong>.</strong>
DOI: 10.6084/m9.figshare.21159079.v6
title: Direct Observation of Photoinduced Carrier Blocking in Mixed-Dimensional 2D/3D Perovskites and the Origin

description: This dataset contains all the source data of the work entitled " Direct Observation of Photoinduced Carrier Blocking in Mixed-Dimensional 2D/3D Perovskites and the Origin" (accepted in Nature Communications)
DOI: 10.6084/m9.figshare.21350964
title: S2. Table

description: <strong>Primers and probes used for recombinase polymerase amplification combined with lateral flow test for the detection of </strong><em><strong>ipaH</strong></em><strong>. </strong>
DOI: 10.6084/m9.figshare.21350964.v1
title: S2. Table

description: <strong>Primers and probes used for recombinase polymerase amplification combined with lateral flow test for the detection of </strong><em><strong>ipaH</strong></em><strong>. </strong>
DOI: 10.6084/m9.figshare.21350982
title: Table 1

description: <strong>Bacterial strains used in the study</strong>
DOI: 10.6084/m9.figshare.21350982.v1
title: Table 1

description: <strong>Bacterial strains used in the study</strong>
DOI: 10.6084/m9.figshare.21350985
title: Table 2

description: <strong>Detection of </strong><em><strong>Shigella</strong></em><strong> and EIEC in food sample</strong>
DOI: 10.6084/m9.figshare.21350985.v1
title: Table 2

description: <strong>Detection of </strong><em><strong>Shigella</strong></em><strong> and EIEC in food sample</strong>
DOI: 10.6084/m9.figshare.21351055.v1
title: Additional file 2 of Building bridges: a review and synthesis of research on teaching knowledge for undergraduate instruction in science, engineering, and mathematics

description: Additional file 2. Full list of reviewed papers.
DOI: 10.6084/m9.figshare.21351055
title: Additional file 2 of Building bridges: a review and synthesis of research on teaching knowledge for undergraduate instruction in science, engineering, and mathematics

description: Additional file 2. Full list of reviewed papers.
DOI: 10.6084/m9.figshare.21351067
title: Additional file 1 of Predicting potential miRNA-disease associations based on more reliable negative sample selection

description: Additional file 1. The 1123 more reliable miRNA-disease associations selected by KR-NSSM.
DOI: 10.6084/m9.figshare.21351067.v1
title: Additional file 1 of Predicting potential miRNA-disease associations based on more reliable negative sample selection

description: Additional file 1. The 1123 more reliable miRNA-disease associations selected by KR-NSSM.
DOI: 10.6084/m9.figshare.21351103
title: Additional file 1 of Tau interactome and RNA binding proteins in neurodegenerative diseases

description: Additional file 1: Supplementary Table 1. List of post-translational modifications detected on tau across AD, AGD, CBD, PiD and PSP. Supplementary Table 2. Summary of human tau interactome and localised pathology proteomics studies. Supplementary Table 3. Summary of rodent Tau interactome studies. Supplementary Table 4. Gene Ontology Molecular Function Gene Sets and Enrichment Statistics. Supplementary Table 5. Summary of pathology targeted localised proteomics studies. Supplementary Table 6. GO cellular component comparison gene sets used for figure 3B.
DOI: 10.6084/m9.figshare.21351103.v1
title: Additional file 1 of Tau interactome and RNA binding proteins in neurodegenerative diseases

description: Additional file 1: Supplementary Table 1. List of post-translational modifications detected on tau across AD, AGD, CBD, PiD and PSP. Supplementary Table 2. Summary of human tau interactome and localised pathology proteomics studies. Supplementary Table 3. Summary of rodent Tau interactome studies. Supplementary Table 4. Gene Ontology Molecular Function Gene Sets and Enrichment Statistics. Supplementary Table 5. Summary of pathology targeted localised proteomics studies. Supplementary Table 6. GO cellular component comparison gene sets used for figure 3B.
DOI: 10.6084/m9.figshare.21351109
title: Additional file 1 of Hydrogen gas alleviates lipopolysaccharide-induced acute lung injury and inflammatory response in mice

description: Additional file 1.
DOI: 10.6084/m9.figshare.21351109.v1
title: Additional file 1 of Hydrogen gas alleviates lipopolysaccharide-induced acute lung injury and inflammatory response in mice

description: Additional file 1.
DOI: 10.6084/m9.figshare.21351131
title: Additional file 2 of Genome-wide identification of biotin carboxyl carrier subunits of acetyl-CoA carboxylase in Brassica and their role in stress tolerance in oilseed Brassica napus

description: Additional file 2.
DOI: 10.6084/m9.figshare.21351131.v1
title: Additional file 2 of Genome-wide identification of biotin carboxyl carrier subunits of acetyl-CoA carboxylase in Brassica and their role in stress tolerance in oilseed Brassica napus

description: Additional file 2.
DOI: 10.6084/m9.figshare.21351130
title: Additional file 1 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 1. Measurement data used to prepare Fig. 3.
DOI: 10.6084/m9.figshare.21351130.v1
title: Additional file 1 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 1. Measurement data used to prepare Fig. 3.
DOI: 10.6084/m9.figshare.21351133
title: Additional file 2 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 2. Measurement data used to prepare Tables 1 and 2.
DOI: 10.6084/m9.figshare.21351133.v1
title: Additional file 2 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 2. Measurement data used to prepare Tables 1 and 2.
DOI: 10.6084/m9.figshare.21351136
title: Additional file 3 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 3. Measurement data used to prepare Figure S2.
DOI: 10.6084/m9.figshare.21351136.v1
title: Additional file 3 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 3. Measurement data used to prepare Figure S2.
DOI: 10.6084/m9.figshare.21351139
title: Additional file 4 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 4. Measurement data used to prepare Tables S2 and S3.
DOI: 10.6084/m9.figshare.21351139.v1
title: Additional file 4 of An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae

description: Additional file 4. Measurement data used to prepare Tables S2 and S3.
DOI: 10.6084/m9.figshare.21351209
title: Additional file 1 of Race-related differences in the economic, healthcare-access, and psychological impact of COVID-19: personal resources associated with resilience

description: Additional file 1. Table S1. COVID-Specific Items and Scales. Table S2. Descriptive Statistics of Person-Reported Outcomes. Table S3. Unadjusted Group Comparisons on Person-Reported Outcomes. Table S4. Representativeness Checks. Table S5. Distribution of Covariates in the Matched Samples. Table S6. Comparison of Explained Variance by Demographics and COVID-specific Variables in Whole-Sample vs. Matched Cohort Analyses.
DOI: 10.6084/m9.figshare.21351209.v1
title: Additional file 1 of Race-related differences in the economic, healthcare-access, and psychological impact of COVID-19: personal resources associated with resilience

description: Additional file 1. Table S1. COVID-Specific Items and Scales. Table S2. Descriptive Statistics of Person-Reported Outcomes. Table S3. Unadjusted Group Comparisons on Person-Reported Outcomes. Table S4. Representativeness Checks. Table S5. Distribution of Covariates in the Matched Samples. Table S6. Comparison of Explained Variance by Demographics and COVID-specific Variables in Whole-Sample vs. Matched Cohort Analyses.
DOI: 10.6084/m9.figshare.21351260
title: Additional file 1 of Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes

description: Additional file 1: Table S1. Telomere statistics and phyloFit substitution counts.
DOI: 10.6084/m9.figshare.21351260.v1
title: Additional file 1 of Evolutionary dynamics of pseudoautosomal region 1 in humans and great apes

description: Additional file 1: Table S1. Telomere statistics and phyloFit substitution counts.
DOI: 10.6084/m9.figshare.21351292
title: Additional file 1 of A web-based database server using 43,710 public RNA-seq samples for the analysis of gene expression and alternative splicing in livestock animals

description: Additional file 1: Table S1. All SRA accessions used in this study. Table S2. Improvement of gene annotation. Table S3. Enriched GO terms on differentially expressed genes (D-36h vs D-24h). Table S4. Enriched GO terms on differentially alternative splicing genes (D-36h vs D-24h). Table S5. Enriched pathways on differentially expressed genes (D-36h vs D-24h). Table S6. Enriched pathways on differentially alternative splicing genes (D-36h vs D-24h). Table S7. Enriched GO terms on differentially expressed genes (DT-24h vs D-24h). Table S8. Enriched GO terms on differentially alternative splicing genes (DT-24h vs D-24h). Table S9. Enriched pathways on differentially expressed genes (DT-24h vs D-24h). Table S10. Enriched pathways on differentially alternative splicing genes (DT-24h vs D-24h). Table S11. Enriched GO terms on differentially expressed genes (DT-36h vs D-36h). Table S12. Enriched GO terms on differentially alternative splicing genes (DT-36h vs D-36h). Table S13. Enriched pathways on differentially expressed genes (DT-36h vs D-36h). Table S14. Enriched pathways on differentially alternative splicing genes (DT-36h vs D-36h).