cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20417694
title: Supplementary Material for: The Effects of Oxytocin on Craving, Mental Health Parameters, and Stress Hormones in Methamphetamine-Dependent Patients Undergoing Matrix Treatment Model: A Randomized, Double-Blind Clinical Trial

description: <b><i>Background:</i></b> Methamphetamine (METH) dependence is an increasing public health problem with a wide range of mental and physical adverse effects. Recent studies report that oxytocin (OXT) has potential therapeutic properties in drug dependence. Hence, the present study was designed to evaluate the effects of OXT on craving, mental health (depression and anxiety), and stress hormones (ACTH and cortisol) in METH-dependent patients undergoing matrix treatment model (MTM), an intensive outpatient approach for stimulant abuse treatment. <b><i>Methods:</i></b> This randomized placebo-controlled clinical trial was conducted in 42 METH-dependent patients undergoing MTM to receive either intranasal OXT 40 IU (<i>n</i> = 21) or normal saline as placebo (<i>n</i> = 21) for 4 weeks. Clinical and biochemical parameters were measured at baseline and end of trials in METH-dependent patients. <b><i>Results:</i></b> Our findings indicated that OXT administration for 4 weeks is associated with a significant improvement in the craving and depression scores, respectively (<i>p</i> &lt; 0.001 and <i>p</i> &lt; 0.001), but there was no significant difference for anxiety scores compared with the placebo group. In addition, OXT administration significantly decreased cortisol (<i>p</i> &lt; 0.001) and ACTH levels (<i>p</i> &lt; 0.002). <b><i>Conclusions:</i></b> These findings suggest that OXT can be considered as a new potential therapeutic for the treatment of METH-dependent patients undergoing MTM. Further studies are required to explore the effectiveness and safety of OXT.
DOI: 10.6084/m9.figshare.21079567
title: Supplementary Material for: Prevalence and Correlates of Embitterment in a National Representative Sample

description: <b><i>Introduction:</i></b> Embitterment may occur after stressful but normal life events, such as job loss, divorce, or unjust events. Embitterment is a normal affect, but it may become clinically relevant in case it becomes very strong and long-lasting, and impairs daily functioning. <b><i>Objective:</i></b> Until now, no epidemiological data on the frequency of high embitterment in the general population have been available. <b><i>Methods:</i></b> A national representative survey of 2,531 people was carried out in Germany in 2019. The participants gave ratings for their embitterment due to perceived events (Posttraumatic Embitterment Scale), their psychological capacity profile (Mini-ICF-APP-S), sick leave duration, and sociodemographics. <b><i>Results:</i></b> About 11.7% of the investigated representative population report moderate embitterment, and another 3.8% high embitterment. Embitterment was only low correlated with other psychopathology, here work anxiety (<i>r</i> = 0.281**). There are no differences between embittered and nonembittered in respect to age, sex, household members, and professional distribution. Those with the highest embitterment have been unemployed more often and have lower income. At least 7.2% of those with high embitterment have a severe psychological capacity impairment and are in need of support by thirds to fulfill daily duties. In 55% of the 802 who reported a stressful event, injustice by an important person has been reported. Injustice by an institution (14%) or societal injustice (12%) was least often reported as a relevant stressful event. <b><i>Conclusion:</i></b> Physicians, therapists, and public health must be aware of embitterment as a specific mental health problem which occurs frequently and may become chronic with work and life participation problems.
DOI: 10.6084/m9.figshare.5732241
title: Dataset of high thermal inertia residential buildings in sixteen Mediterranean locations

description: This dataset comprises the performance and geometry data of 192000 buildings for 16 climate regions (12000 per climate region). The climate regions are CYP_Larnaca, DZA_Algiers, EGY_Alexandria, ESP_Malaga, ESP_Valencia, FRA_Marseille, GRC_Athens, ISR_TelAviv, ITA_Naples, ITA_Venice, LBY_Tripoli, MAR_Casablanca, MNE_Podgorica, TUN_Tunis, TUR_Istanbul, and TUR_Izmir. The geometric data was generated using the EPSAP algorithm; the construction elements physical properties were saved from the EPSAP algorithm database; and, the performance data was obtained using the FPOP algorithm coupled to the simulation engine EnergyPlus v8.8.0.
DOI: 10.18112/openneuro.ds003507.v1.0.1
title: fMRI: Audiovisual Valence Congruence
DOI: 10.5066/f7cf9pc4
title: Data Release for 2018 One-Year Seismic Hazard Forecast for the Central and Eastern United States from Induced and Natural Earthquakes

description: We produce the USGS 2018 one-year probabilistic seismic hazard forecast for the central and eastern United States from induced and natural earthquakes. For consistency, the updated 2018 forecast is developed using the same probabilistic seismicity-based methodology as applied in the two previous forecasts for 2016 and 2017. Rates of earthquakes across the U.S. (M ≥ 3.0) grew rapidly between 2008 and 2015 but have steadily declined over the past three years, especially in areas of Oklahoma and southern Kansas where fluid injection has decreased. The seismicity pattern in 2017 was complex with earthquakes more spatially dispersed than in previous years. Some areas of west-central Oklahoma experienced increased activity rates where industrial activity increased. Earthquake rates in Oklahoma (429 earthquakes of M ≥ 3 and 4 M ≥ 4), Raton Basin (Colorado/New Mexico border, 6 earthquakes M ≥ 3 and one M ≥ 4 earthquake), and the New Madrid seismic zone (11 earthquakes M ≥ 3) continue to be higher than historic levels. Fundamental data that were essential in producing the 2018 forecast, such as the seismicity catalog and hazard curve data for peak ground acceleration and 0.2- and 1.0-second horizontal response acceleration versus annual frequency of exceedance are included here. Data that portray: probabilistic earthquake shaking intensity based on the Modified Mercalli Intensity (MMI) scale, chance of experiencing potentially damaging earthquake shaking, and probabilistic ground motion maps based on this one-year model for the Central and Eastern United States are also available here. For comparison purposes, data portraying the same parameters, but based on the 2014 USGS National Seismic Hazard long-term hazard model are also included for the Western United States.
DOI: 10.5066/p9yufzj6
title: Digital elevation models of upper North Fork Toutle River near Mount St. Helens, based on 2006-2014 airborne lidar surveys

description: The lateral blast, debris avalanche, and lahars of the May 18th, 1980, eruption of Mount St. Helens, Washington, dramatically altered the surrounding landscape. Lava domes were extruded during the subsequent eruptive periods of 1980-1986 and 2004-2008. Nearly four decades after the emplacement of the 1980 debris avalanche, high sediment production persists in the North Fork Toutle River basin, which drains the northern flank of the volcano. This high sediment production poses a risk of flooding to downstream communities along the Toutle and Cowlitz Rivers and of clogging the shipping channel of the Columbia River. Consequently, U.S. Army Corps of Engineers (USACE), under the direction of Congress, built a sediment retention structure on the North Fork Toutle River in 1989 to maintain an authorized level of flood protection. During 2006, 2010, 2011, 2012, 2013, and 2014, USACE contracted the acquisitions of six high-precision airborne lidar surveys of upper North Fork Toutle River valley near Mount St. Helens. All surveys used near infrared lasers except the 2014 topobathymetric lidar survey which used a green laser scanner. The U.S. Geological Survey (USGS) used classified returns and breaklines from these surveys to produce digital elevation models (DEMs) of the ground surface for each dataset, including beneath forest cover and shallow water surfaces. This USGS data release contains digital elevation data as a 3-foot resolution raster datasets (.tif files). This DEM can be used to develop sediment budgets and models of sediment erosion, transport, and deposition.
DOI: 10.5281/zenodo.1111822
title: Simulations Of A Popc Lipid Bilayer In Water Solution At Various Nacl And Cacl2 Concentration With Lipid14, Tip3P And Dang Or Ecc Ions

description: flat POPC bilayer simulations at various NaCl and CaCl2 concentration

modelled with Lipid14 force field, TIP3p water model and Dang or ECC ions.

file names report molar fraction of cations (i.e. not bulk concentrations).

simulations performed with Gromacs 5.1.4 (*.xtc files) and openMM 7 (*.dcd files)

simulation length 300 ns

temperature 313 K (otherwise noted)
DOI: 10.5281/zenodo.1483473
title: Riba-Roja Reservoir Bathymetries

description: 20007 and 2008 Bathymetries of Riba-roja reservoir
DOI: 10.6084/m9.figshare.3114310
title: Global filovirus surveillance in bats

description: This dataset collates all published data reporting the results of diagnostic tests for all filoviruses in bat species of the world. We report the total number of bats sampled, the number that tested positive and the number that were confirmed negative for each species, with citations for the original publication.
DOI: 10.5066/p96b0iec
title: Digital elevation models of Mount St. Helens crater and upper North Fork Toutle River basin, based on 1987 and 1999 airborne photogrammetry surveys

description: The lateral blast, debris avalanche, and lahars of the May 18th, 1980, eruption of Mount St. Helens, Washington, dramatically altered the surrounding landscape. Lava domes were extruded during the subsequent eruptive periods of 1980-1986 and 2004-2008. Nearly four decades after the emplacement of the 1980 debris avalanche, high sediment production persists in the North Fork Toutle River basin, which drains the northern flank of the volcano. This high sediment production poses a risk of flooding to downstream communities along the Toutle and Cowlitz Rivers and of clogging the shipping channel of the Columbia River. Consequently, U.S. Army Corps of Engineers (USACE), under the direction of Congress, built a sediment retention structure on the North Fork Toutle River in 1989 to maintain an authorized level of flood protection. During 1987 and 1999, WH Pacific, under contract to USACE, facilitated airborne photogrammetry surveys of Mount St. Helens crater and upper North Fork Toutle River basin. Digital softcopy photogrammetry techniques were used to produce a contour map, breaklines, and masspoints. The U.S. Geological Survey (USGS) used these data to produce a digital elevation model (DEM) of the survey areas. This USGS data release contains digital elevation data as a 10- and 30-foot resolution raster datasets (dem_1987.tif and dem_1999.tif). These DEMs can be used to develop sediment budgets and models of sediment erosion, transport, and deposition.
DOI: 10.5281/zenodo.6279737
title: DataZhengzhou

description: Data for the manuscript 2022GL098401.
DOI: 10.5281/zenodo.6535604
title: POPC bilayer, 154 mM NaCl ions, prosECCo75 version of CHARMM36 FF, 310K, gromacs 2021.2

description: Atomistic molecular dynamic simulation of POPC lipid bilayer in 154 mM NaCl water solution. Water model: TIP3P - CHARMM36 version<br> Lipids: prosECCo75 version of CHARMM36<br> Ions: Sodium: Na_s: DOI: 10.1021/acs.jpcb.5b05221 ; Jungwirth2015 ; scaled<br> Chloride: Cl_2s: DOI: 10.1080/00268976.2013.875231 ; Jungwirth2014b ; scaled README.yaml contains info on simulations files, plus basic analysis (headgroup order parameters, area per lipid)
DOI: 10.5281/zenodo.6599349
title: Supporting data and software for the article "Comprehensive and scalable quantification of splicing differences with MntJULiP"

description: Supporting data and software for the publication "Comprehensive and scalable quantification of splicing differences with MntJULiP".
DOI: 10.5517/ccdc.csd.cc1nsmsv
title: CCDC 1543018: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Stephen G. Pyne|2017|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.13273184
title: 2.5D assessment.zip

description: CNN assessment detailed information
DOI: 10.5281/zenodo.7077693
title: Replication package for Jumping the gun: how dictators got ahead of their subjects

description: Hariri, Jacob G. and Wingender, Asger M.: Jumping the gun: how dictators got ahead of their subjects. Forthcoming in the Economic Journal.
DOI: 10.5281/zenodo.7077694
title: Replication package for Jumping the gun: how dictators got ahead of their subjects

description: Hariri, Jacob G. and Wingender, Asger M.: Jumping the gun: how dictators got ahead of their subjects. Forthcoming in the Economic Journal.
DOI: 10.5281/zenodo.7080393
title: Plot Data from Tree Species Inventory in a Nigerian Rainforest v1.0.0

description: These are plot data from fifteen 40 m by 40 m sample plots established in Oban Division of Cross River National Park, Nigeria, between 23<sup>rd</sup> August 2019 and 9<sup>th</sup> September 2019. We have also included data summaries and RStudio codes used for analysis and generating results for the manuscript entitled: "Impact of human foraging on tree diversity, composition and abundance in a tropical rainforest", submitted for publication as an original research article in Biotropica. All data and R code required to generate the results as shown in the manuscript have been included.
description: Fifteen permanent sample plots of 40 by 40 m dimension were established along an elevational gradient rising from about 100 m to 500m above sea level between 23rd August 2019 and 9th September 2019. Five plot clusters with three plots each were established in three areas of the forest: one cluster in Erukut, two in Aking and two in Osomba, making a total of 15 sample plots with a total area of 2.4 hectares. Due to the steep topography of Aking and Osomba locations, plots were established at closer horizontal intervals based on elevational differences of about 20 m. All trees with a minimum of 10 cm dbh in all 15 plots were measured and tagged with a unique number. The collected data included plot information (plot number and GPS coordinate of the four corners of plots using Garmin eTrex 10 Outdoor Handheld GPS Unit), tree dbh (diameter of a tree at 1.30 m from the base) using a diameter tape and LaserAce 1000 rangefinder for points of measurement too high for a diameter tape, species name, assigned tag number, and species group (edible and inedible species). Measurement of buttress trees, folk trees, leaning trees or trees on a slope was completed using the African Tropical Rainforest Observation Network (AfriTRON) protocol. Trees were identified to species level by a field taxonomist and in cases where there was uncertainty in the identification of species, tree locations were noted, and specimens were collected and stored in herbarium presses for further taxonomic work.
DOI: 10.5519/qd.nevmhguw
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.6770220
title: Optogenetic activation of striatal D1R and D2R cells differentially engages downstream connected areas beyond the basal ganglia

description: This dataset supports the Cell Reports publication entitled '<em>Optogenetic activation of striatal D1/D2 medium spiny neurons differentially engages downstream connected areas beyond the basal ganglia</em>' (https://doi.org/10.1016/j.celrep.2021.110161). Please refer to this publication for detailed information. The dataset contains functional (GE-BOLD) and anatomical (T1-weighted) scans of a total of 34 subjects (Cre-mouse lines Drd1-Cre, Drd2-Cre, A2A-Cre, and wildtype mice) in NIFTI format, multiplied by 10. The 'StimulationProtocol' text file specifies the precise onset (in seconds) and duration (in seconds) of the optogenetic stimulation during a 480 seconds functional scan. The 'SubjectDetails' file lists the subject IDs, their gender, their genotype, the number of functional scans, and whether they have an associated anatomical scan.
DOI: 10.5281/zenodo.6770219
title: Optogenetic activation of striatal D1R and D2R cells differentially engages downstream connected areas beyond the basal ganglia

description: This dataset supports the Cell Reports publication entitled '<em>Optogenetic activation of striatal D1/D2 medium spiny neurons differentially engages downstream connected areas beyond the basal ganglia</em>' (https://doi.org/10.1016/j.celrep.2021.110161). Please refer to this publication for detailed information. The dataset contains functional (GE-BOLD) and anatomical (T1-weighted) scans of a total of 34 subjects (Cre-mouse lines Drd1-Cre, Drd2-Cre, A2A-Cre, and wildtype mice) in NIFTI format, multiplied by 10. The 'StimulationProtocol' text file specifies the precise onset (in seconds) and duration (in seconds) of the optogenetic stimulation during a 480 seconds functional scan. The 'SubjectDetails' file lists the subject IDs, their gender, their genotype, the number of functional scans, and whether they have an associated anatomical scan.
DOI: 10.6084/m9.figshare.21130183
title: Reference library of 16S rRNA gene of different bacterial and archaeal species

description: Since its discovery in the 1970s, 16S rRNA gene is the go-to biomolecule for determining phylogenetics and evolutionary relationships amongst and between species. Current understanding posits that 16S rRNA molecule containing species-determining sequence motif useful for microbial identification. It is with this in mind that this work catalogues the 16S rRNA gene sequence of an ensemble of bacterial and archaeal species common in environmental matrixes. Originally from European Nucleotide Archive, the compendium of over 60 16S rRNA gene sequence should serve as a useful starting point for exploring the utility and application potential of 16S rRNA phylogenetics.
DOI: 10.6084/m9.figshare.21130183.v1
title: Reference library of 16S rRNA gene of different bacterial and archaeal species

description: Since its discovery in the 1970s, 16S rRNA gene is the go-to biomolecule for determining phylogenetics and evolutionary relationships amongst and between species. Current understanding posits that 16S rRNA molecule containing species-determining sequence motif useful for microbial identification. It is with this in mind that this work catalogues the 16S rRNA gene sequence of an ensemble of bacterial and archaeal species common in environmental matrixes. Originally from European Nucleotide Archive, the compendium of over 60 16S rRNA gene sequence should serve as a useful starting point for exploring the utility and application potential of 16S rRNA phylogenetics.
DOI: 10.5281/zenodo.7083485
title: Certifying Parity Reasoning Efficiently Using Pseudo-Boolean Proofs --- Supplemental Material

description: Supplemental material for the extended version of the paper "Certifying Parity Reasoning Efficiently Using Pseudo-Boolean Proofs".
DOI: 10.5281/zenodo.4569840
title: Certifying Parity Reasoning Efficiently Using Pseudo-Boolean Proofs --- Supplemental Material

description: Supplemental material for the extended version of the paper "Certifying Parity Reasoning Efficiently Using Pseudo-Boolean Proofs".
DOI: 10.6084/m9.figshare.21130130.v1
title: Supplementary Material for: Cathelicidins Induce Toll-Interacting Protein Synthesis to Prevent Apoptosis in Colonic Epithelium

description: Cathelicidin peptides secreted by leukocytes and epithelial cells are microbicidal but also regulate pathogen sensing via toll-like receptors (TLRs) in the colon by mechanisms that are not fully understood. Herein, analyses with the attaching/effacing pathogen <i>Citrobacter rodentium</i> model of colitis in cathelicidin-deficient (<i>Camp</i><sup><i>−/−</i></sup>) mice, and colonic epithelia demonstrate that cathelicidins prevent apoptosis by sustaining post-transcriptional synthesis of a TLR adapter, toll-interacting protein (TOLLIP). Cathelicidins induced phosphorylation-activation of epidermal growth factor receptor (EGFR)-kinase, which phosphorylated-inactivated miRNA-activating enzyme Argonaute 2 (AGO2), thus reducing availability of the TOLLIP repressor miRNA-31. Cathelicidins promoted stability of TOLLIP protein via a proteosome-dependent pathway. This cathelicidin-induced TOLLIP upregulation prevented apoptosis in the colonic epithelium by reducing levels of caspase-3 and poly (ADP-ribose) polymerase (PARP)-1 in response to the proinflammatory cytokines, interferon-γ (IFNγ) and tumor necrosis factor-α (TNFα). Further, <i>Camp</i><sup><i>−/−</i></sup> colonic epithelial cells were more susceptible to apoptosis during <i>C. rodentium</i> infection than wild-type cells. This antiapoptotic effect of cathelicidins, maintaining epithelial TOLLIP protein in the gut, provides insight into cathelicidin’s ability to regulate TLR signaling and prevent exacerbated inflammation.
DOI: 10.5281/zenodo.7085120
title: FESOM model data and particle tracking data used in publication 'Cross-shelf transport of Barents Sea dense water as a sink for CO2 in the Arctic Ocean'

description: FESOM model data and particle tracking data used in the paper 'Cross-shelf transport of Barents Sea dense water as a sink for CO2 in the Arctic Ocean" by Andreas Rogge at al. 1) FESOM velocity fields averaged over the top 200 m water depth, averaged over the time period 2015-2018. 2) FESOM transect at 95°E in the Arctic Ocean (temperature, salinity and velocity), averaged over the time period 2015-2018. 3a) Particle back-tracking data based on daily FESOM velocity fields in netcdf format. Particles were released at 95°E every 14 days during the year 2018 and tracked until they reached the surface. Three different constant sinking velocities were used, representative for small and large non-ballasted particles and small ballasted particles. 3b) Distribution of particles at the surface for the experiments with three different sinking velocities as mat files.
DOI: 10.5281/zenodo.7085119
title: FESOM model data and particle tracking data used in publication 'Cross-shelf transport of Barents Sea dense water as a sink for CO2 in the Arctic Ocean'

description: FESOM model data and particle tracking data used in the paper 'Cross-shelf transport of Barents Sea dense water as a sink for CO2 in the Arctic Ocean" by Andreas Rogge at al. 1) FESOM velocity fields averaged over the top 200 m water depth, averaged over the time period 2015-2018. 2) FESOM transect at 95°E in the Arctic Ocean (temperature, salinity and velocity), averaged over the time period 2015-2018. 3a) Particle back-tracking data based on daily FESOM velocity fields in netcdf format. Particles were released at 95°E every 14 days during the year 2018 and tracked until they reached the surface. Three different constant sinking velocities were used, representative for small and large non-ballasted particles and small ballasted particles. 3b) Distribution of particles at the surface for the experiments with three different sinking velocities as mat files.