cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/9hvs8s76gy
title: Penicillin resistance in bovine Staphylococcus aureus: genomic evaluation of the discrepancy between phenotypic and molecular test methods 

description: Staphylococcus aureus is a major pathogen in humans and animals. In cattle, it is one of the most important agents of mastitis causing serious costs in the dairy industry. Early diagnosis and adequate therapy are, therefore, two key factors to deal with the problems caused by this bacterium, whereby benzylpenicillin (penicillin) is usually the first choice to treat these infections. Unfortunately, penicillin resistance testing in bovine S. aureus strains show discrepancy results between the tests used, and consequently, the best method for assessing penicillin resistance is still unknown. The aim of this study was, therefore, to find a method that assesses penicillin resistance in S. aureus and to elucidate the mechanisms leading to the observed discrepancies.
A total of 146 methicillin-sensitive S. aureus strains isolated from bovine mastitis were tested for penicillin resistance using a broth microdilution (MIC) and two different disc diffusion (DD) protocols. Furthermore, the strains were analyzed for the presence of the bla operon genes (blaI, blaR1, blaZ) by PCR, while a subset of 45 strains was also subjected to whole genome sequencing. Penicillin resistance in S. aureus is highly dependent on the completeness of the bla operon promotor. When the bla operon was complete based on WGS analysis, all strains showed MIC ≥1 µg/mL, whereas, when the bla operon was mutated (31-nucleotide deletion), they were penicillin sensitive except in those strains where an additional, bla operon-independent resistance mechanism was observed.
The WGS of S. aureus analysis fully explained the discrepant results of different resistance testing methods, such as DD and PCR, compared with MIC used as reference method. However, caution is required when interpretating such results.
DOI: 10.17632/bkddjg8n7s
title: LINF_350005200

description: Pyruvate kinase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/bmxzmmcnjn
title: Data for: Dolomite cation order in the geological record

description: RAW diffractograms and Supplementary Information
DOI: 10.17632/n8kt46m78d
title: Data for: Response Surface Analysis: A Tutorial for Examining Linear and Curvilinear Effects" published by RAC-Revista de Administração Contemporânea

description: This dataset was extracted by the paper Schönbrodt, F. D., Humberg, S., & Nestler, S. (2018). Testing similarity effects with dyadic response surface analysis. We renamed variables to illustration an example in supply chain: X = female predictor variable, Y = male predictor variable, Z_f = female outcome variable have been renamed in this tutorial Y = supplier dependence predictor variable, X = buyer dependence predictor variable, Z_b = buyer satisfaction outcome variable.
DOI: 10.17632/rrkxykpt2s
title: LINF_110017500

description: 60S ribosomal protein L28; Leishmania infantum
DOI: 10.17632/vjzrwf6pv8
title: In situ 3D-bioprinting MoS2 accelerated gelling hydrogel scaffold for promoting chronic diabetic wound healing. Xiaoya Ding et al.

description: In this submission, we share the data about the paper "In situ 3D-bioprinting MoS2 accelerated gelling hydrogel scaffold for promoting chronic diabetic wound healing". Our primary objectives were to characterize the generation of the MoS2 accelerated gelling hydrogel scaffold via in situ 3D-bioprinting technology. And, the antioxidant and photothermal antimicrobial functions of the scaffold were also detailedly characterized. Furthermore, we used the scaffold for chronic diabetic wounds healing and proved that the MoS2 accelerated gelling hydrogel scaffold is significantly valuable for chronic wound management.
DOI: 10.17632/53sdh5s4bz
title: Original immuno-blotting data for: Proteostasis regulated by testis-specific ribosomal protein RPL39L maintains mouse spermatogenesis

description: Original images of Western blotting and Coomassie blue staining for: Proteostasis regulated by testis-specific ribosomal protein RPL39L maintains mouse spermatogenesis.
DOI: 10.17632/7x6dk5mt53
title: Evolution of plume geometry, dilution and reactive mixing in porous media under highly transient flow fields at the surface water-groundwater interface

description: Highly transient boundary conditions affect mixing processes in porous media. An example these boundaries is the case of fluctuating rivers that are in contact with the aquifer. Here we apply flow-through experiments to study the evolution of plume geometry, dilution and mixing under such transient boundary coditions, using experimental data and simulation results.  The transport simulations are performed with a modified version of the MT3D-USGS (Bedekar et al., 2016), in which we implement a non-linear velocity-dependent dispersion parametrization.

This dataset contains the following files: 

data_Figs_3_4.mat          Data for Figures 3 and 4. Concentration distibution of the tracer under transient flow conditions.
data_Fig_5.mat                Data for Figure 5. Observed and simulated breakthrough curves for the transient flow.
data_Fig_6.mat                Data for Figure 6. Vertical profiles for the transient flow.
data_Figs_7_8.mat          Data for Figures 7 and 8. Dilution index, perimeter and area.
data_Fig_9.mat                Data for Figure 9. Dilution index fand critical dilution index for different mixing ratios.
mt_dsp5_modified.for     Modified version of the dispersion code of MT3D-USGS  with non-linear velocity-dependent parametrization

The original source code of MT3D-USGS can be found in https://github.com/MODFLOW-USGS/mt3d-usgs

References:
Bedekar, V., Morway, E.D., Langevin, C.D., and Tonkin, M., 2016, MT3D-USGS version 1.0.0: Groundwater Solute Transport Simulator for MODFLOW: U.S. Geological Survey Software Release, 30 September 2016, http://dx.doi.org/10.5066/F75T3HKD
DOI: 10.17632/8f5db6m83f
title: Effects of Hf additions on the microstructures and mechanical properties of Ni-rich Ni55Ti45 alloys

description: Effects of Hf additions on the microstructures and mechanical properties of Ni-rich Ni55Ti45 alloys
DOI: 10.17632/b7ygpbk72t
title: NeoDoppler - cerebral hemodynamics in healthy term born neonates

description: These datasets are part of a study to measure cerebral hemodynamics the two first days of life in healthy neonates. There are one datafile for arterial signals, venous signals and interobserver data respectively.
DOI: 10.17632/dkpt4vj46d
title: Data for: Efficacy of combination therapy with pentosan polysulfate sodium and adipose tissue-derived stem cells for the management of interstitial cystitis in a rat model

description: The results of real time-PCR analysis of inflammatory markers comparing control & experimental IC groups, including PPS, MSC, and MSC with PPS
DOI: 10.17632/y38rr2j8b6
title: Dataset on Diagnostic and Management Protocol among children with Allergic Rhinitis

description: Aim of the data in this article is to determine the prevalence, sociodemographic features, comorbid illnesses, complications and quality of life in children referred to the outpatient clinic of ''Allergic Rhinitis'' in a Children Hospital. Allergic rhinitis was reported in 78% of studied children and was frequently characterized by significant morbidity. Allergic rhinitis affected all paediatric age group and was peaked at age group 15-17 years and 11–14 years. There were associated epidemiological features, clinical manifestations, comorbid illnesses, complications and affectation of the quality of life in children. Early referral to the specialist is highly recommended to avoid further complications. Further multicentre studies should be carried out in order to understand the pathophysiologic mechanisms of allergic rhinitis more comprehensively.
DOI: 10.17632/3wdwj65jb2
title: LINF_360044800

description: protein of unknown function - conserved
Leishmania infantum (strain JPCM5)
DOI: 10.17632/5hrxyf635t
title: Universidad Santiago de Cali. Balance de los resultados de Investigación 2017-2022

description: Objetivo del informe:
Analizar la evolución de los resultados de investigación, en especial los que se derivan de la producción de artículos científicos y el esfuerzo de innovación desplegado por la USC, así como objetivar su impacto a nivel científico, de innovación, de la visibilidad y la societal.
Fuente de datos:
Los datos han sido generados a partir de Scopus y la Oficina Europea de Patentes, y analizados con herramientas de SCImago y SciVal. Se usaron indicadores comúnmente aceptados, los que dan un panorama comprensivo de los resultados en diferentes niveles de significancia. La ventana de observación utilizada es 2017-2022.  Los datos 2022 son provisionales.
DOI: 10.17632/5pc8738cgd
title: ARCOVID database June 2023

description: Long COVID patients database
DOI: 10.17632/78vthdz5ny
title: Data for: Procurement Auctions under Quality Manipulation Corruption

description: Code for generating all the figures in the paper.
DOI: 10.17632/9pwdwbvyz9
title: White Island Sentinel-1 dataset

description: Interferograms, StaMPS output time series and supplementary figures (S1 - S6)
DOI: 10.17632/9spmp2fps9
title: Experimental videos in studying the influences of dry- and wet-bed downstream conditions on dam break multiphase flood waves in a reservoir with 3 cm sediment depth (10% silted-up)

description: Experimental videos: Herein, 24 distinct video files have been presented which related to dam break multiphase flood shock wave experiments, performed in the Shiraz University, Civil and Environmental Engineering Department’s Hydraulic Lab (Shiraz, Iran). The initial upstream sediment depth was 3 cm which makes the upstream reservoir 10% silted-up with respect to the total 30 cm height of the reservoir. Different initial downstream conditions have also been considered including dry-bed downstream and wet-bed downstream with different levels of standing water; 2 cm, 4 cm and 5 cm. Considering three cameras which covered length of the flume, 4 different dam break scenarios and 2 repetitions conducted for each test, a total of 24 videos collected which presented in this document. The additional explanations related to video files can be seen in “Explanation table of videos” file which attached to this document in Microsoft Word (DOCX/DOC) format. Foad Vosoughi, Mohammad Reza Nikoo, Gholamreza Rakhshandehroo, Amir H. Gandomi First author Foad Vosoughi Research Associate, Civil Eng. Department, Shiraz University, Shiraz, Iran. Email address: foad.vosooghi@gmail.com ORCID: 0000-0002-4321-9788 Second author Mohammad Reza Nikoo Associate Professor, Civil Eng. Department, Shiraz University, Shiraz, Iran. Third author Gholamreza Rakhshandehroo Professor, Civil Eng. Department, Shiraz University, Shiraz, Iran. Fourth author Amir H. Gandomi Professor, Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, Australia.
DOI: 10.17632/bfcmyc6ym3
title: OF SED

description: CSFS
DOI: 10.17632/dh9y3jjf4y
title: GCA20

description: Data Availability for  journal
DOI: 10.17632/h7jntzvbbm
title: Raw Data from the Study of the Room-Temperature Superconductivity and Its Advanced Solid State

description: This is the raw dataset of the research article entitled `Possible room-temperature superconductivity arising in a phonon-engineered niobium film' written by Nobuyuki Zen. Figure numbers have been changed from Version 1 because of manuscript revisions. For details, see an attached file `Difference between Mendeley Dataset Versions 1 and 2.txt'. Not only the raw data in the main article but also those in the Supplementary Data are included here. `***.ogwu' can be opened with the data analysis and graphing software, Origin (OriginLab Corporation). `***.xlsx' can be opened with Excel (Microsoft). `PnC-Nb_i-line-Layout.GDS' is the GDSII file of the PnC pattern used in this study. The author assumes no responsibility for any problem that may result from dealing with this data. In particular, the addition of the author as a responsible author and/or an inventor in any publication, including electronic publications, is prohibited.
DOI: 10.17632/s3hnjdrvwk
title: Database on arthropod capture attempts and floral visits by hummingbirds

description: This database shows the number of arthropod capture attempts and flower visits by the members of a hummingbird ensemble that lives in a seasonal ecosystem of West Mexico (Nevado de Colima volcano) at 4260 m a. s. l. Foraging data were collected during the warm-dry (May 2016), rainy (September 2016), and cold-dry (February 2017) seasons using the ad libitum sampling method (54 hours/season). Data presented are 1) hummingbird species, 2) sex, 3) number of arthropod capture attempts, 4) number of floral visits, 5) total time of observation, and 6) the time of day when the observation was made.
DOI: 10.17632/twvnk8rdh3
title: microstructure_permeability_Liu_et_al

description: Boda Liu 2023/10/19 boda_liu@hotmail.com Here you can find code and data used in the study "Enhanced permeability due to deformation: microstructure analyses with applications to crustal magmatic mush" by Boda Liu, Chao Qi, Ross N. Mitchell, Cin-Ty A. Lee, Chuan-Zhou Liu. The folder "MCMC_code" includes the C++ code for the MCMC implementation. Boost (https://www.boost.org/users/history/version_1_78_0.html) and GSL (https://www.gnu.org/software/gsl/) are required for the current project. Useful installation guides can be found at https://www.boost.org/doc/libs/1_77_0/more/getting_started/windows.html and https://solarianprogrammer.com/2020/01/26/getting-started-gsl-gnu-scientific-library-windows-macos-linux/. The folder "sample_data" contains microstructure data used by MCMC code. Please don't change anything in this folder. The folder "mcmc_output" contains output files generated by MCMC code. Please don't change anything in this folder. The folder "plot_sample_fit" contains MATLAB scripts to plot fits to microstructure data.
DOI: 10.17632/vhhbvnw36h
title: AA Resilience Letter_Supplementary Materials

description: Supplementary materials for "Association of Resilience and Perceived Stress in Patients with Alopecia Areata: A Cross Sectional Study"
DOI: 10.17632/2nmgm9s9bc
title: JDCR-D-21-00326R3, Pyoderma gangrenosum in a patient on ixekizumab

description: Supplemental data for case report
DOI: 10.17632/34b4hw949h
title: Residential rooftop solar installation in China, 2021 (city-level)

description: This data set contains city-level new installation of residential rooftop solar capacity for the year 2021 in China
DOI: 10.17632/3vht95njg3
title: Tree ring growth data in Json format for the development of logistic tree mortality models.

description: Json format is an easy-to-read textual representation of the experimental data. Data in Json format has great processing capabilities in R (https://www.r-project.org). R is a free software environment for statistical computing and graphics. Initial data: Treedata.txt и RWdata.txt Based on the initial data that are in the public domain (Cailleret et al., 2016), a data structure for tree ring increments in Json format and a converter program in the R programming language were developed. Converter program: Treedata.RWdata.to.json.R Result: TreeRWdata.json The following data is defined for each tree: Site- identifier of the tree's growing place, Species- short name of the species, Name- tree identifier, Article- link to the article, Contact- author, Old- tree age, be.sep- sign of tree status, Status- tree status values (1- live , 0- dead), Years- [year of birth of tree, year of sampling from tree or year of dried tree, DBH- diameter of tree at breast height (cm), Series- number of measurements of tree rings (mm) Reference: Cailleret, Maxime et al. (2016), Data from: Towards a common methodology for developing logistic tree mortality models based on ring-width data, Dryad, Dataset, https://doi.org/10.5061/dryad.1bv6n
DOI: 10.17632/58w2wx93xk
title: Intestinal ELF4 Deletion Exacerbates Alcoholic Liver Disease by Disrupting Gut Homeostasis

description: Alcohol liver disease (ALD) is characterized by intestinal barrier disruption and gut dysbiosis. Dysfunction of E74 like ETS transcription factor 4 (ELF4) leads to colitis. We aimed to test the hypothesis that intestinal ELF4 plays a critical role in maintaining the normal function of intestinal barrier and gut homeostasis in a mouse model of ALD.
Wide type (WT) and Intestinal epithelial specific ELF4 knockout (Elf4-/-) mice were pair-fed the Lieber-DeCarli liquid diet containing 5% (w/v) alcohol or isocaloric maltose dextrin for 21 days. Serum levels of triglyceride (TG), the alanine aminotransferase (ALT) and aspartate transaminase (AST) were determined. RNA-Seq was used to quantify the gene expression of livers. Fecal microbiota was assessed with 16s rRNA sequencing. And fecal metabolite profiles were quantified with ultrahigh performance liquid chromatography coupled with mass spectrometry (UHPLC-MS/MS).
Intestinal ELF4 deficiency resulted in dysfunction of the intestinal barrier. Tight junction associated genes including TJP1 and OCLN had decreased expression in both Elf4-/- mice and ELF4-/- CACO2 cells. Elf4-/- mice exhibited gut microbiota (GM) dysbiosis with the characteristic of a larger proportion of Proteobacteria. The LPS increased in Elf4-/- mice and was the most important differential metabolite between Elf4-/- mice and WT mice. What’s more, an increase in the phylum Proteobacteria was positively correlated with higher LPS levels. Alcohol exposure increased liver-to-body weight ratio, and hepatic inflammation response and steatosis in WT mice. These deleterious effects were exaggerated in Elf4-/- mice. Alcohol feeding significantly increased serum levels of TG, ALT and AST in Elf4-/- mice but not in WT mice. Alcohol feeding decreased the Tjp1 mRNA expression, which was further exacerbated by ELF4 deletion. In addition, alcohol exposure resulted in enriched expression of genes associated with cholesterol metabolism and lipid metabolism in livers from Elf4-/- mice. 16S rRNA sequencing showed a decrease abundance of Akkermansia and Bilophila in Elf4-/- mice. In conclusion, intestinal ELF4 is an important host protective factor in maintaining gut homeostasis and alleviating alcohol exposure-induced hepatic steatosis and injury.
DOI: 10.17632/8n353fnmnh
title: Data on citations

description: This is data on citations of papers by country year and its determinants.
DOI: 10.17632/d2psvs6cpd
title: Dataset for: A spatial multi-criteria methodology for site selection of utility-scale renewable energy projects considering multiple renewable resources: A case in Bohol, Philippines

description: These datasets support the findings of the study titled “A spatial multi-criteria methodology for site selection of utility-scale renewable energy projects considering multiple renewable resources: A case in Bohol, Philippines”. This study aims to present a resource screening strategy that is capable of supporting multiple RE resources. By extending the grid to the areas with relatively high resource density, this procedure tends to level the development opportunities of RE resources in terms of grid connectivity. Using multi-criteria analysis, it was used to find the best location for the development of “renewable energy pools” in Bohol, Philippines. There are five files in this repository. The data with the filename “POAs Supply Curve” contains the supply curves of all Project Opportunity Areas (POAs) with and without grid extension. The land-use factor, unit installed capacity and several economic parameters necessary to generate these curves are also placed in this file. The data with the filename “REP ranking” contains the overall ranking of REPs in two criteria weighting scenarios (level and case study) with and without grid extension. Results of ranking changes within and across classes of REPs is also placed here. The data with the filename “Sensitivity Analysis” holds the results of the sensitivity analysis we conducted to test the ability of selected evaluation criteria to differentiate and rank REPs. The data with the filename “REP Energy Gen” contains several energy generation scenarios within and across classes of ranked REPs. The data with the filename “Data” contains the sources and description of datasets used in this study.
DOI: 10.17632/dky5bg9ghy
title: intermolar distance

description: İntermolar distance measurements of the rats in all groups.
DOI: 10.17632/mmxwmf6s68
title: Seroprevalence of COVID 19 in an Ophthalmology Clinic

description: Study conducted to evaluate de prevalence of antibodies against SARS CoV-2 in an healthcare workers of an ophthalmology center in Guatemala.
DOI: 10.17632/n86krnmf5t
title: Investigación en casos de administracion de medicinas en pacientes de covid-19(con posible usos de drogas)

description: Este es un dataset donde encontraras varios reportes de  algunas interacciones que tiene el covid 19 con distintas drogas, contiene una lista de las drogas aprobadas para su manejo y sus componentes, hay simulaciones de distintas enzimas a los componentes de diferentes pruebas de covid y en dichas simulaciones también se puede observar en distintas varintes del virus.
DOI: 10.17632/nzfmmfkvkb
title: LINF_160021200

description: protein of unknown function - conserved Leishmania infantum (strain JPCM5)
DOI: 10.17632/vgnbwdk4yx
title: Accession Number Files and Reports in manuscript 'Molecular characterisation and in vitro three-method antifungal susceptibility testing of some Prototheca isolates from Chinese patients'

description: Accession Number Files (NCBI GenBank) and Reports in manuscript 'Molecular characterisation and in vitro three-method antifungal susceptibility testing of some Prototheca isolates from Chinese patients'
DOI: 10.17632/vp6bs2sc54
title: Dataset_Price and income elasticities of industrial electricity demand in Brazil: estimates and implications of COVID - 19

description: These are data from the survey on electricity consumption in the industrial sector in Brazil. The research period was from 2003 to 2020 and considered that industrial consumption is explained by the price of electricity, industrial production, the price of natural gas, the level of imports and the climatic variables, average temperature, and level of rainfall.
The study considered six static estimators and one dynamic estimator (GMM) to verify robustness.
The main findings were: The impacts of COVID-19 were significant in all models, especially for the more industrialized states; the participation of industry (industrial production) has been declining in recent years, impacting less and less electricity consumption and; the price elasticity of demand for industrial electricity is more elastic in the more industrialized states, showing a systematic effect of levels of development and wealth generation on the price elasticity of electricity.
DOI: 10.17632/4rwfnknb4h
title: Research data for MG

description: Two in-situ observation datasets about flow velocity and suspended sediment concentration in 2003 and 2018.