cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22624351.v1
title: Additional file 2 of Genome-wide identification and expression analysis of wall-associated kinase (WAK) and WAK-like kinase gene family in response to tomato yellow leaf curl virus infection in Nicotiana benthamiana

description: Additional file 2: Table S2. Cis-acting elements in the promoter regions of NbWAK/WAKL genes.
DOI: 10.6084/m9.figshare.16862732.v1
title: Additional file 2 of Predicting subcellular location of protein with evolution information and sequence-based deep learning

description: Additional file 2. This file contains additional information about dataset D3106, correlation between each pair of subcellular locations in dataset D3106.
DOI: 10.6084/m9.figshare.21587801
title: Ambient PM2.5 exposure causes cellular senescence via DNA damage, micronuclei formation, and cGAS activation

description: Ambient PM2.5 is one of the environmental risk factors and was correlated with senescence-related diseases based on the epidemiologic investigation. However, little is known about senescence induced by PM2.5 as well as the underlying mechanisms. In this study, we demonstrated that PM2.5 exposure aggravated cellular senescence <i>in vivo</i> and <i>in vitro</i>, and disrupted micronuclei (MN) played a vital role in this process. Our results suggested that the nuclear envelope (NE) of PM2.5-induced MN was ruptured. Subsequently, cGAS was found to localize to approximately 80% of the disrupted MN but few for intact MN. Upon examination of cGAMP and SA-β-Gal, the cGAS-STING pathway was found activated and related to cellular senescence induced by PM2.5. Taken together, we reported a novel finding that PM2.5 exposure causes cellular senescence <i>via</i> DNA damage, MN formation, and cGAS activation. These results revealed the potential toxicity of PM2.5 and its related mechanisms in cellular senescence.
DOI: 10.6084/m9.figshare.22624345.v1
title: Additional file 1 of Genome-wide identification and expression analysis of wall-associated kinase (WAK) and WAK-like kinase gene family in response to tomato yellow leaf curl virus infection in Nicotiana benthamiana

description: Additional file 1: Table S1. Protein sequences of WAK/WAKL of Nicotiana benthamiana, Arabidopsis, and tomato.
DOI: 10.6084/m9.figshare.16862735.v1
title: Additional file 3 of Predicting subcellular location of protein with evolution information and sequence-based deep learning

description: Additional file 3. This file contains additional information about dataset D4802, correlation between each pair of subcellular locations in this dataset.
DOI: 10.6084/m9.figshare.21587801.v1
title: Ambient PM2.5 exposure causes cellular senescence via DNA damage, micronuclei formation, and cGAS activation

description: Ambient PM2.5 is one of the environmental risk factors and was correlated with senescence-related diseases based on the epidemiologic investigation. However, little is known about senescence induced by PM2.5 as well as the underlying mechanisms. In this study, we demonstrated that PM2.5 exposure aggravated cellular senescence <i>in vivo</i> and <i>in vitro</i>, and disrupted micronuclei (MN) played a vital role in this process. Our results suggested that the nuclear envelope (NE) of PM2.5-induced MN was ruptured. Subsequently, cGAS was found to localize to approximately 80% of the disrupted MN but few for intact MN. Upon examination of cGAMP and SA-β-Gal, the cGAS-STING pathway was found activated and related to cellular senescence induced by PM2.5. Taken together, we reported a novel finding that PM2.5 exposure causes cellular senescence <i>via</i> DNA damage, MN formation, and cGAS activation. These results revealed the potential toxicity of PM2.5 and its related mechanisms in cellular senescence.
DOI: 10.6084/m9.figshare.22624247.v1
title: Additional file 7 of CDK9 inhibition induces epigenetic reprogramming revealing strategies to circumvent resistance in lymphoma

description: Additional file 7.
DOI: 10.6084/m9.figshare.22624250
title: Additional file 8 of CDK9 inhibition induces epigenetic reprogramming revealing strategies to circumvent resistance in lymphoma

description: Additional file 8.
DOI: 10.6084/m9.figshare.24209244
title: Additional file 6 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.24209244.v1
title: Additional file 6 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 6
DOI: 10.6084/m9.figshare.16862738
title: Additional file 4 of Predicting subcellular location of protein with evolution information and sequence-based deep learning

description: Additional file 4. This file lists the AUC values of this method on dataset D3106.
DOI: 10.6084/m9.figshare.22624429
title: Additional file 5 of Uterine luminal-derived extracellular vesicles: potential nanomaterials to improve embryo implantation

description: Additional file 5: Table S1. The specific primers for qRT-PCR.
DOI: 10.6084/m9.figshare.22624435.v1
title: Additional file 7 of Uterine luminal-derived extracellular vesicles: potential nanomaterials to improve embryo implantation

description: Additional file 7: Table S3. Clustering of proteins in the uterine luminal fluid-Evs.
DOI: 10.6084/m9.figshare.22624444
title: Additional file 10 of Uterine luminal-derived extracellular vesicles: potential nanomaterials to improve embryo implantation

description: Additional file 10: Table S6. Differentially abundant proteins in PTR cells treated with ULF-Evs.
DOI: 10.6084/m9.figshare.24209240
title: Additional file 1 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24209240.v1
title: Additional file 1 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24209243
title: Additional file 2 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.16862741
title: Additional file 5 of Predicting subcellular location of protein with evolution information and sequence-based deep learning

description: Additional file 5. This file lists the AUC values of this method on dataset D4802.
DOI: 10.6084/m9.figshare.22624354
title: Additional file 3 of Genome-wide identification and expression analysis of wall-associated kinase (WAK) and WAK-like kinase gene family in response to tomato yellow leaf curl virus infection in Nicotiana benthamiana

description: Additional file 3: Table S3. Tissue expression profiles of NbWAK/WAKL genes.
DOI: 10.6084/m9.figshare.24209243.v1
title: Additional file 2 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.16862747.v1
title: Additional file 7 of Predicting subcellular location of protein with evolution information and sequence-based deep learning

description: Additional file 7. The average precision and ranking loss of this method when tested on dataset D4802.
DOI: 10.6084/m9.figshare.16862755.v1
title: Additional file 2 of Impact of the gut microecology on Campylobacter presence revealed by comparisons of the gut microbiota from chickens raised on litter or in individual cages

description: Additional file 2: Supplementary Table 1. The chicken genetic family structure and samples of the progeny population. Supplementary Table 2. Summary of microbes associated with Campylobacter. Supplementary Table 3. Correlations between Lactobacillus and microbes at the genus level in different intestinal segments. Supplementary Table 4. The relative abundance of microorganisms in used litter.
DOI: 10.6084/m9.figshare.24209246
title: Additional file 3 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24209246.v1
title: Additional file 3 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 3
DOI: 10.6084/m9.figshare.24209249
title: Additional file 4 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.24209249.v1
title: Additional file 4 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.24209253
title: Additional file 7 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.22624406
title: Additional file 2 of Comprehensive molecular characterization of complete mitogenome assemblies of 33 Eimeria isolates infecting domestic chickens

description: Additional file 2: Table S2. Summary of the chicken Eimeria mitogenomic information included in this study.
DOI: 10.6084/m9.figshare.24209253.v1
title: Additional file 7 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 7
DOI: 10.6084/m9.figshare.22624357
title: Additional file 4 of Genome-wide identification and expression analysis of wall-associated kinase (WAK) and WAK-like kinase gene family in response to tomato yellow leaf curl virus infection in Nicotiana benthamiana

description: Additional file 4: Table S4. List of primers used in this study.
DOI: 10.6084/m9.figshare.24209252
title: Additional file 5 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 5
DOI: 10.6084/m9.figshare.24209252.v1
title: Additional file 5 of Comprehensive analysis of N6-methyladenosine-related RNA methylation in the mouse hippocampus after acquired hearing loss

description: Supplementary Material 5
DOI: 10.15129/253deccb-5e58-42f2-9791-24f79c71beb3
title: Data for: "Excipients impact on fenofibrate equilibrium solubility in fasted and fed simulated intestinal fluids assessed using a Design of Experiment protocol"

description: This study has applied a small scale design of experiment (DoE) equilibrium solubility approach in order to investigate the impact of excipients on fenofibrate solubility in simulated fasted and fed intestinal media. The solubility dataset applies to the related paper: Excipients impact on fenofibrate equilibrium solubility in fasted and fed simulated intestinal fluids assessed using a design of experiment protocol.
DOI: 10.6084/m9.figshare.24209259
title: Additional file 8 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 8
DOI: 10.6084/m9.figshare.24209259.v1
title: Additional file 8 of MRE11:p.K464R mutation mediates olaparib resistance by enhancing DNA damage repair in HGSOC

description: Supplementary Material 8
DOI: 10.60520/ieda/113127
title: Clumped Isotope Data for Assessment of Ancient Ground Sloth Thermophysiology

description: This dataset contains clumped isotope as well as carbon and oxygen isotope data pertaining to a set of ground sloth and mammoth tooth specimens. Measurements were performed at the University of California, Los Angeles. This data was collected for the purpose of determining the body temperature and physiology of ancient ground sloths.
DOI: 10.6084/m9.figshare.7956344
title: Additional file 2: of Systematic analysis of the effects of different nitrogen source and ICDH knockout on glycolate synthesis in Escherichia coli

description: All FPKM values of all genes. (XLSX 345 kb)
DOI: 10.6084/m9.figshare.7956344.v1
title: Additional file 2: of Systematic analysis of the effects of different nitrogen source and ICDH knockout on glycolate synthesis in Escherichia coli

description: All FPKM values of all genes. (XLSX 345 kb)
DOI: 10.6084/m9.figshare.16696510.v1
title: Additional file 3 of GC-MS-based metabolite profiling of key differential metabolites between superior and inferior spikelets of rice during the grain filling stage

description: Additional file 3: Table S2. Significantly differential metabolites between 10 DAF and 25 DAF of inferior spikelets (IS).
DOI: 10.6084/m9.figshare.16696513
title: Additional file 4 of GC-MS-based metabolite profiling of key differential metabolites between superior and inferior spikelets of rice during the grain filling stage

description: Additional file 4: Table S3. Significantly differential metabolites between 10 DAF of superior spikelets (SS) and 25 DAF of inferior spikelets (IS).
DOI: 10.6084/m9.figshare.16696513.v1
title: Additional file 4 of GC-MS-based metabolite profiling of key differential metabolites between superior and inferior spikelets of rice during the grain filling stage

description: Additional file 4: Table S3. Significantly differential metabolites between 10 DAF of superior spikelets (SS) and 25 DAF of inferior spikelets (IS).
DOI: 10.6084/m9.figshare.16696467
title: Additional file 18 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 18: Table S17.
DOI: 10.6084/m9.figshare.16696467.v1
title: Additional file 18 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 18: Table S17.
DOI: 10.6084/m9.figshare.16696470
title: Additional file 19 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 19: Table S18.
DOI: 10.6084/m9.figshare.16696470.v1
title: Additional file 19 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 19: Table S18.
DOI: 10.6084/m9.figshare.16696485
title: Additional file 22 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 22: Table S21.
DOI: 10.6084/m9.figshare.16696476
title: Additional file 20 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 20: Table S19.
DOI: 10.6084/m9.figshare.16696476.v1
title: Additional file 20 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 20: Table S19.
DOI: 10.6084/m9.figshare.16696479
title: Additional file 21 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 21: Table S20.
DOI: 10.6084/m9.figshare.16696479.v1
title: Additional file 21 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 21: Table S20.
DOI: 10.6084/m9.figshare.16696485.v1
title: Additional file 22 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 22: Table S21.
DOI: 10.6084/m9.figshare.16696488
title: Additional file 23 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 23: Table S22.
DOI: 10.6084/m9.figshare.16696488.v1
title: Additional file 23 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 23: Table S22.
DOI: 10.6084/m9.figshare.16696491
title: Additional file 24 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 24: Table S23.
DOI: 10.6084/m9.figshare.16696491.v1
title: Additional file 24 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 24: Table S23.
DOI: 10.6084/m9.figshare.16696494
title: Additional file 2 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 2: Table S1.
DOI: 10.6084/m9.figshare.16696497
title: Additional file 3 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 3: Table S2.
DOI: 10.6084/m9.figshare.16696497.v1
title: Additional file 3 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 3: Table S2.
DOI: 10.6084/m9.figshare.16696500
title: Additional file 4 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 4: Table S3.
DOI: 10.6084/m9.figshare.16696503.v1
title: Additional file 5 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 5: Table S4.
DOI: 10.6084/m9.figshare.16696494.v1
title: Additional file 2 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 2: Table S1.
DOI: 10.6084/m9.figshare.16696500.v1
title: Additional file 4 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 4: Table S3.
DOI: 10.6084/m9.figshare.16696503
title: Additional file 5 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 5: Table S4.
DOI: 10.6084/m9.figshare.16696506
title: Additional file 6 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 6: Table S5.
DOI: 10.6084/m9.figshare.16696506.v1
title: Additional file 6 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 6: Table S5.
DOI: 10.6084/m9.figshare.16696509
title: Additional file 7 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 7: Table S6.
DOI: 10.6084/m9.figshare.16696509.v1
title: Additional file 7 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 7: Table S6.
DOI: 10.6084/m9.figshare.16696512
title: Additional file 8 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 8: Table S7.
DOI: 10.6084/m9.figshare.16696512.v1
title: Additional file 8 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 8: Table S7.
DOI: 10.6084/m9.figshare.16696518
title: Additional file 9 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 9: Table S8.
DOI: 10.6084/m9.figshare.16696518.v1
title: Additional file 9 of Single-cell RNA sequencing reveals markers of disease progression in primary cutaneous T-cell lymphoma

description: Additional file 9: Table S8.
DOI: 10.6084/m9.figshare.16696581
title: Additional file 3 of Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines

description: Additional file 3. Supplementary Table S5.
DOI: 10.6084/m9.figshare.16696581.v1
title: Additional file 3 of Low pathogenic avian influenza virus infection retards colon microbiota diversification in two different chicken lines

description: Additional file 3. Supplementary Table S5.
DOI: 10.6084/m9.figshare.16696627
title: Additional file 10 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 10. Interactive 3D images of Figs. 15A-K.
DOI: 10.6084/m9.figshare.16696627.v1
title: Additional file 10 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 10. Interactive 3D images of Figs. 15A-K.
DOI: 10.6084/m9.figshare.16696633
title: Additional file 2 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 2. Character matrix of the phylogenetic analysis.
DOI: 10.6084/m9.figshare.16696633.v1
title: Additional file 2 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 2. Character matrix of the phylogenetic analysis.
DOI: 10.6084/m9.figshare.16696639
title: Additional file 3 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 3. Interactive 3D images of Figs. 1A, C, E.
DOI: 10.6084/m9.figshare.16696639.v1
title: Additional file 3 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 3. Interactive 3D images of Figs. 1A, C, E.
DOI: 10.6084/m9.figshare.16696642
title: Additional file 4 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 4. Interactive 3D images of Figs. 2A-L.
DOI: 10.6084/m9.figshare.16696642.v1
title: Additional file 4 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 4. Interactive 3D images of Figs. 2A-L.
DOI: 10.6084/m9.figshare.16696648.v1
title: Additional file 5 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 5. Interactive 3D images of Figs. 10A-K.
DOI: 10.6084/m9.figshare.16696648
title: Additional file 5 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 5. Interactive 3D images of Figs. 10A-K.
DOI: 10.6084/m9.figshare.16696654
title: Additional file 6 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 6. Interactive 3D images of Figs. 11A-L.
DOI: 10.6084/m9.figshare.16696654.v1
title: Additional file 6 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 6. Interactive 3D images of Figs. 11A-L.
DOI: 10.6084/m9.figshare.16696657
title: Additional file 7 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 7. Interactive 3D images of Figs. 12A-L.
DOI: 10.6084/m9.figshare.16696657.v1
title: Additional file 7 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 7. Interactive 3D images of Figs. 12A-L.
DOI: 10.6084/m9.figshare.16696663
title: Additional file 8 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 8. Interactive 3D images of Figs. 13A-L.
DOI: 10.6084/m9.figshare.16696666
title: Additional file 9 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 9. Interactive 3D images of Figs. 14A-L.
DOI: 10.6084/m9.figshare.16696663.v1
title: Additional file 8 of Diversification through gustatory courtship: an X-ray micro-computed tomography study on dwarf spiders

description: Additional file 8. Interactive 3D images of Figs. 13A-L.