cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19328747.v1
title: Data - MiRuFre

description: This file contains raw EMG data as used in the study: "Spectral Properties Of Physiological Mirror Activity: An Investigation of Frequency Features and Common Input Between Homologous Muscles".
DOI: 10.15468/dl.t7q6tg
title: Occurrence Download

description: A dataset containing 4042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Zygophyllum fabago L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 4042 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013474-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24770916.v1
title: Annotated data sets used for fine-tuning the model

description: Annotated data sets used for fine-tuning the model
DOI: 10.6084/m9.figshare.26148799.v4
title: Experimental data

description: Experimental data
DOI: 10.6084/m9.figshare.29128409.v4
title: IN-DEPTH INSIGHTS INTO IOMT INFRASTRUCTURE CLOUD COMPUTING’S ADVANCES AND IMPACT

description: The appraisal of e-health care system adoption with the in-depth grounded knowledge of the internet of medical things infrastructure, established influential impact role toward cloud computing on the (IoMT)in Federal Teaching Hospital, Nigeria, is the focus of this research. In writing this project, the researcher has raised the need for understanding cloud computing in the public health care system and to get information about what the government is doing by bringing information to their doorstep. A further attempt has been made to examine the vibrancy of the adoption, such as IoMT in tackling the problem facing the public health care sector, providing a scheme to eradicate the challenges, making it viable for the commodity that everyone can buy, including the stakeholder which adopts the use of the new shift. However, the research work will critically examine the content of the E-health system with the adoption of cloud computing, helping the IoMT to achieve the result, as it opines that it will serve as reference material for future researchers.<br>
DOI: 10.6084/m9.figshare.25828390.v2
title: Information capacity in the mirror of foreign trade data? A case study of Chinese Maritime Customs, 1864-1938

description: Dataset for the paper "Information capacity in the mirror of foreign trade data? A case study of Chinese Maritime Customs, 1864-1938"
DOI: 10.6084/m9.figshare.5769144.v1
title: Illustrations of flowers and pollinators

description: The illustrations of flower and pollinator species.
DOI: 10.15468/dl.cdthf3
title: Occurrence Download

description: A dataset containing 39362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Ranunculus bulbosus L.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 39362 records from 261 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013473-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.16606640.v1
title: Supplementary Table S1.pdf

description: Supplementary Table S1 of the manuscript DOI: 10.3168/jds.2021-20633
DOI: 10.6084/m9.figshare.11933610.v1
title: Do-file for peri-urban DCE in Kenya

description: Do-files for DCE in a peri-urban setting in Kenya
DOI: 10.6084/m9.figshare.c.3598283_d1.v1
title: Additional file 2: Table S1. of The influence of a short-term gluten-free diet on the human gut microbiome

description: Results macronutrient intake per participant. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.28327445.v1
title: Omaro midden data (cleaned).xlsx

description: Midden analysis data from T10/986 and T10/1163, Ōmaro Spit, New Zealand
DOI: 10.6084/m9.figshare.20401953.v1
title: ML-training dataset.xlsx

description: Machine learning dataset
DOI: 10.6084/m9.figshare.21947897.v1
title: Supplementary Material for: Xpert MTB/RIF in the Diagnosis of Mediastinal Tuberculous Lymphadenitis by Endoscopic Ultrasound-Guided Needle Aspiration Techniques: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Lymphadenopathy is one of the most prevalent clinical manifestations of extrapulmonary tuberculosis. Endosonography is the recommended technique in the diagnostic work-up of mediastinal lymphadenopathies. Xpert MTB/RIF assay is a self-contained cartridge-based fully automated DNA testing platform which can accurately detect both tuberculosis and mycobacterial resistance to rifampicin. A few studies assessed its accuracy for mediastinal lymph node aspirates collected using endosonography. A systematic review of observational studies was performed to provide a pooled estimate of sensitivity and specificity of Xpert MTB/RIF in the diagnosis of mediastinal tuberculous lymphadenitis using endoscopic ultrasound-guided needle aspiration techniques. <b><i>Methods:</i></b> A search of the scientific evidence was carried out using PubMed, Embase, and Scopus. Articles describing observational studies on Xpert MTB/RIF in the diagnosis of mediastinal tuberculous lymphadenitis using endoscopic ultrasound-guided needle aspiration techniques were selected. <b><i>Results:</i></b> Eight studies met the inclusion criteria. The overall pooled sensitivity was 61% (95% CI = 55–68%; <i>I</i><sup>2</sup> = 66.3%; <i>p</i> = 0.004), overall pooled specificity was 89% (95% CI = 85–91%; <i>I</i><sup>2</sup> = 90.1%; <i>p</i> &lt; 0.0001). Area under the sROC curve was 0.68. Only one study reported data on rifampin resistance detection and showed a sensitivity of 83.3% and a specificity of 16%. <b><i>Conclusions:</i></b> Xpert MTB/RIF shows a good accuracy in the diagnosis of mediastinal mycobacterial lymphadenitis by endosonographic needle aspiration techniques. It should be always recommended for suspected mediastinal tuberculosis.
DOI: 10.6084/m9.figshare.23807328.v4
title: De-identified_dataset_hemidiaphragm

description: De-identified dataset including examination of the right hemidiaphragm using M-mode ultrasonography during tidal breathing and loaded breathing while lifting the weight with the left or right hand.
DOI: 10.6084/m9.figshare.14368694.v1
title: HPDmobile H6 Audio Data

description: Processed audio data, collected over 38 days, from four locations inside the home. Each ten second audio file was mean shifted, full wave rectified, and down-sampled, to remove identifying speech. The results are stored as csv files, by hub and by day.
DOI: 10.6084/m9.figshare.14945667.v1
title: Supplemental data from Causal analysis of the temperature impact on deep-sea biodiversity

description: The deep sea comprises more than 90% of the ocean; therefore, understanding the controlling factors of biodiversity in the deep sea is of great importance for predicting future changes in the functioning of the ocean system. Recently, we have increasing consensus on two plausible factors, (i) seafloor particulate organic carbon (POC) derived from primary production in the euphotic zone and (ii) temperature, as the drivers of deep-sea species richness that have often been discussed in the contexts of the species-energy and physiological tolerance hypotheses. Nonetheless, factors that drive deep-sea biodiversity are still actively debated potentially owing to a mirage of correlations (sign and magnitude are generally time dependent), which are often found in nonlinear, complex ecological systems, making the characterization of causalities difficult. Here, we tested the causal influences of POC flux and temperature on species richness using long-term palaeoecological datasets derived from sediment core samples and convergent cross mapping, a numerical method for characterizing causal relationships in complex systems. The results showed that temperature, but not POC flux, influenced species richness over 10<sup>3</sup>–10<sup>4</sup>-year time scales. The temperature–richness relationship in the deep sea suggests that human-induced future climate change may, under some conditions, affect deep-sea ecosystems through deep-water circulation changes rather than surface productivity changes.
DOI: 10.6084/m9.figshare.28883531.v1
title: Supplementary Material for: Clinicopathological features, surgical outcomes and microbial patterns in chronic granulomatous mastitis: A retrospective study from a public hospital in Lima, Peru.

description: Objective: To evaluate the clinicopathological characteristics of patients, surgery-related factors, and microbial patterns in patients diagnosed with chronic granulomatous mastitis treated at a public hospital in Lima, Peru.
Methods: Retrospective study that included 161 women diagnosed with chronic granulomatous mastitis (GM) at the Hospital de Emergencias Grau, Seguro Social de Salud, Lima, Peru, between 2019 and 2021. The diagnosis of GM was established based on anatomical and microbiological criteria. We evaluated clinicopathological features, and factors associated with the need for oncoplastic surgery and post-surgical complications. Additionally, we analyzed 26 out of 161 breast tissue samples to detect the presence of pathogens using Next-Generation Sequencing (NGS).
Results: The average age was 37.7±8.4 years, 53.9% reported the use of hormonal contraceptives, and 14.8% displayed elevated prolactin. Eighty percent of patients received corticosteroids, and 50.9% underwent surgical intervention, with 22.5% experiencing post-surgical complications. Factors associated with the need for surgery included the presence of a tumor, inflammation, shorter disease duration, higher BI-RADS classification, lesion size of 2-5 cm, and corticosteroid use. A recurrence rate of 3.8% was identified. Among the 26 analyzed samples, Corynebacterium was detected in 80.8%, with C. kroppenstedtii identified in 13 of the 26 (50%) samples.
Conclusions: Medical treatment was the initial choice for all patients, nearly half underwent oncoplastic surgery, with some post-surgical complications reported. Nonetheless, chronic GM recurrence was low. Corynebacterium was the most frequently identified genus through NGS.
DOI: 10.6084/m9.figshare.23911242.v2
title: Feynman diagrams for WL

description: This is a networkx representation of Feynman diagrams. Please, feel free to add information to this json file. The json file can be easily turned into networkx and grakel formats respectively and further work can be expanded. This is a foundational dataset and more work can be done, such as adding more information and adding e.g. cross sections.GitHub with code: Tangraizrod/FeynmanGraphs at master (github.com)
DOI: 10.6084/m9.figshare.28094222.v1
title: power spectral model program

description: The power spectral model, as one of the tools for characterizing seismic ground motions, is widely used in stochastic structural dynamic analysis. However, most of these models don’t consider the effects of magnitude and distance at the bedrock level. Therefore, this study aims to develop a power spectral model accounting for the effects of magnitude and distance. To this end, 1610 actual seismic motions recorded on 65 bedrock sites were selected to analyse the effects of magnitude and epicentral distance on the bedrock power spectrum. Finally, a bedrock power spectral model incorporating magnitude and epicentral distance was constructed.
DOI: 10.6084/m9.figshare.28953005.v1
title: Interview [HIDDEN].docx

description: Interview [HIDDEN]
DOI: 10.6084/m9.figshare.1186844.v1
title: Gaussian Job Archive for C3H6

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.26049133.v1
title: Supplementary Material for: Potential for Optimization of Growth Hormone Treatment in Children with Growth Hormone Deficiency, Small for Gestational Age, and Turner Syndrome in Germany: Data from the PATRO<sup>®</sup> Children Study

description: <b><i>Introduction:</i></b> Growth hormone (GH) treatment in children with growth hormone deficiency (GHD), short children born small for gestational age (SGA), and Turner syndrome (TS) is well established. However, a variety of parameters are still under discussion to achieve optimal growth results and efficiency of GH use in real-world treatment. <b><i>Methods:</i></b> German GH-treatment naïve patients of the PATRO Children database were grouped according to their start of treatment into groups of 3 years from 2007 to 2018. Time trends in age, gender, GH dose, height standard deviation score (SDS), first-year growth response, and Index of Responsiveness (IoR) were investigated in children with GHD, short children born SGA, and TS starting GH treatment in the German patient population of the PATRO Children database from 2007 to 2018 to determine specific parameters for GH treatment optimization. <b><i>Results:</i></b> All patient groups started GH treatment at a relatively high chronological age (2007–2009: GHD 8.33 ± 3.19, SGA 7.32 ± 2.52, TS 8.65 ± 4.39) with a slight but not significant trend towards younger therapy start up to 2016–2018 (GHD 8.04 ± 3.36, SGA 6.67 ± 2.65, TS 7.85 ± 3.38). In the GHD and SGA groups, female patients were underrepresented compared to male patients (GHD 32.3%, SGA 43.6%) with no significant change over the 4 time periods. Patients with GHD started GH treatment at a low dose (0.026 mg/kg/day). In SGA and TS patients, GH therapy was started below the registered dose recommendation (30.0 μg/kg/day and 33.7 μg/kg/day, respectively). In the first year of treatment, the mean GH dose was increased moderately (GHD: 30.7, SGA: 35.7, TS: 40.8 μg/kg/day). There was no significant change of GH dosing over time from 2007 to 2018. The IoR was comparable between time-groups for all 3 diagnoses. <b><i>Discussion:</i></b> This study shows potential for improvement of GH treatment results in GHD, SGA, and TS patients in terms of early dose adjustment and younger age at the start of treatment. This is in accordance with important parameters used in prediction models.
DOI: 10.6084/m9.figshare.28045040.v2
title: GVHD RAG Data with Production and Interaction Type

description: A classic retrieval augmented generation (RAG) Q&A bot that answers questions about the GVHD medical condition.
DOI: 10.6084/m9.figshare.26963491.v1
title: Data file for "Predicting public mental health needs in a crisis using social media indicators: A Singapore big data study"

description: The daily aggregated time-series data used in this study, "Predicting public mental health needs in a crisis using social media indicators: A Singapore big data study" (including actual values and normalised values), are available in the figshare repository. The count of daily emergency room visits data (“IMH Visits”) is available from the corresponding author upon reasonable request.The study can be cited as:Othman, N.A., Panchapakesan, C., Loh, S.B., Zhang, M., Gupta, R.K., Martanto, W., Phang, Y.S., Morris, R.J.T., Loke, W.C., Tan, K.B., Subramaniam, M., Yang, Y. Predicting public mental health needs in a crisis using social media indicators: a Singapore big data study. <i>Sci Rep</i> <b>14</b>, 23222 (2024). https://doi.org/10.1038/s41598-024-73978-5
DOI: 10.6084/m9.figshare.7751825.v5
title: RNA-Seq data files

description: RNA expression matrices - FPKM from STAR, cufflinks and TPM from STAR, RSEM, Toil. Fusion results from deFuse, SOAPfuse, fusioncatcher, STAR-Fusion.
DOI: 10.6084/m9.figshare.3563088.v1
title: Appendix B. Full-conditional distributions and Markov chain Monte Carlo algorithm for parameter estimation.

description: Full-conditional distributions and Markov chain Monte Carlo algorithm for parameter estimation.
DOI: 10.6084/m9.figshare.1008325.v4
title: Type 1 error rate using TFCE for ERP

description: The archive contains codes used to create and analyze the data for 1) the review paper on clustering methods and 2) the OHBM poster on using TFCE to control the type 1 error rate over the whole space of EEG data analyzed - the data (ie the actual FWER measured per subject) are also availbale.
DOI: 10.6084/m9.figshare.29066690.v1
title: Bioinformatics pipeline for processing ADPr-Seq data

description: Software to produce figures in ADP-Seq paper, filter reads properly paired to restriction enzyme fragments termini, and quantify the amount of ADPr DNA modification in each restriction enzyme fragment.
DOI: 10.6084/m9.figshare.28087742.v3
title: Choi et al., (2024) Nat. Commun. <b>"Cortical Representations of Affective Pain Shape Empathic Fear in Male Mice"</b>

description: Codes and example datasets related to Choi et al., (2024) Nature CommunicationsSource Data related to Choi et al., (2024) Nature CommunicationsOriginal figures (Fig. 5, Fig. 6) related to Choi et al., (2024) Nature CommunicationsHere, using miniature endoscopic calcium imaging, we identify distinct and dynamic neural ensembles in the anterior cingulate cortex (ACC) that encode observational fear across both excitatory and inhibitory neurons in male mice. Notably, we find that the population dynamics encoding vicarious freezing information are conserved in ACC pyramidal neurons and are specifically represented by affective, rather than sensory, responses to direct pain experience. Furthermore, using circuit-specific imaging and optogenetic manipulations, we show that distinct populations of ACC neurons projecting to the periaqueductal gray (PAG), but not to the basolateral amygdala (BLA), selectively convey affective pain information and regulate observational fear.
DOI: 10.6084/m9.figshare.19349171.v2
title: 14DatasetsList

description: Number of participants in 14 public sEMG datasets
DOI: 10.6084/m9.figshare.25162046.v2
title: Final Sample of articles included in systematic literature review sorted alphabetically and by journal

description: This article seeks to identify and present an overview of how scholars have studied young people and news. Through a systematic literature review, relying both on qualitative and quantitative analytical approaches, we explore how scholars from the field of journalism and media and communication have studied youth methodologically, what kind of youth has gained most interest, and how this topic has been framed. Petticrew and Roberts describe a systematic review as a study that aims to create a general overall picture of evidence in a topic area, which is needed to direct future research efforts (Petticrew & Roberts, 2006). Literature reviews, particularly systematic reviews, are useful to highlight research gaps, identifying what we know and what we need to know (Siddaway et al., 2019). As such, the goal of a systematic review is to shed light on how research can be skewed and to identify trends and patterns. This is important, because it illuminates how our knowledge is constructed and the power of scholars to give attention to specific geographical areas, certain age groups, and preferences.
DOI: 10.6084/m9.figshare.8479415.v1
title: Replicate genomes

description: All 467 genomes across all 19 populations (includes all replicate genomes and the representative genome for each population).<br>
DOI: 10.6084/m9.figshare.1200132.v1
title: Doddington Sandstone

description: Micro-Computed Tomography (micro-CT) segmented image of Doddington Sandstone. The micro-CT image is segmented according to the variation of grey values between grains (bright- 255 grey value) and pores (dark- 0 grey value) using the watershed segmentation algorithm in the Avizo software. Details of the images (voxel resolution and image size) is present as a text file. The image can be visualized in visualization software such as Fiji ((http://fiji.sc/Fiji) or Avizo. If you utilise this in a scientific publication then please mention in the acknowledgements that this data is courtesy of Qatar Carbonates and Carbon Storage Research Centre, Imperial College London. For more information, please contact Saurabh M Shah at saurabh.shah10@imperial.ac.uk or Edo S Boek at e.boek@imperial.ac.uk
DOI: 10.6084/m9.figshare.17303885.v1
title: NAS results of NAS-Bench-x11

description: NAS results on nb-311, nb-111, and nbnlp-11 (Figure 5 in paper), and multi-fidelity results on nb-311 (Figure 8 in paper).
DOI: 10.6084/m9.figshare.24018099.v2
title: DT Data

description: Data for the DT.
DOI: 10.6084/m9.figshare.22496170.v1
title: Tree times

description: Timepoints for single cell lineage trees from Hu, Lelek, Spanjaard et al. (Nature Genetics 2022). Please cite the original publication: https://www.nature.com/articles/s41588-022-01129-5
DOI: 10.6084/m9.figshare.25025000.v1
title: Data and code from: Loss of functional diversity rather than species diversity of pollinators decreases community-wide trait matching and pollination function

description: All data and R script archived here were used for GLMM analyses in "Loss of functional diversity rather than species diversity of pollinators decreases community-wide trait matching and pollination function".
DOI: 10.6084/m9.figshare.25311157.v1
title: Data for Morphological and reproductive analyses

description: Populations caught in April 2015 were female dominated and characterized with rapid reproduction, since all samples were already mature. The GSI, absolute and relative number of oocytes, and the size of oocytes were significantly different compared to all native as well as non-native areas of occurrence. The smallest mature female reached 26.27 mm, while the mean SL was 41.08 mm between all populations. Samples were characterized with three size groups of oocytes, and the biggest reached oocyte size was 1.46 mm. The absolute as well as relative number of oocytes was higher compared to other studies from native, and non-native areas of occurrence. There was no significant difference in the condition between females and males within each population, thus they were both in good and/or bad condition. Majority of traits were statistically significant, while more than a half can be suggested to have biological importance. Significant differences were related to characters located on the head, fins and associated with the length or height of the body.
DOI: 10.15468/dl.4f7yd4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia innesi (Fowler, 1934)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((45.0928 -15.4583,44.9648 -15.5455,44.9648 -16.1504,50.6026 -16.1504,50.9509 -15.5762,50.9726 -15.1612,50.7278 -14.6803,50.4023 -12.881,49.5781 -11.5543,49.0498 -11.4838,48.3367 -12.0308,48.0746 -12.7462,47.3475 -13.4008,47.2485 -14.053,46.7839 -14.7317,46.0549 -15.2149,45.0928 -15.4583))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013475-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.27600000.v1
title: Data

description: Dataset used in this study
DOI: 10.6084/m9.figshare.28633241.v3
title: Datasets for the manuscript submitted to GIScience & Remote Sensing

description: The datasets are used for the study "<b>The Hidden Economic Costs of Air Pollution in China: Evidence from Remotely Sensed Nighttime Light Data</b>", which was submitted to GIScience & Remote Sensing.