cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/chfcjmnvcv
title: 3-D Ocean Particle Tracking Modeling Reveals Extensive Vertical Movement and Downstream Interdependence of Closed Areas in the Northwest Atlantic

description: Novel 3-D passive particle tracking experiments were performed using the Lagrangian particle simulator ‘Parcels’ v 2.1 available at http://www.oceanparcels.org in the northwest Atlantic to elucidate connectivity among areas closed to protect vulnerable marine ecosystems (Wang et al., 2020). Climatological monthly–mean currents were obtained from the Bedford Institute of Oceanography North Atlantic Model (BNAM) ocean model over the period 1990-2015 (Wang et al. 2019). BNAM is an eddy resolving North Atlantic Ocean model with a nominal resolution of 1/12° (approximately ~8 km at the Equator). It is based on NEMO 2.3 (Nucleus for European Modelling of the Ocean) and has a maximum of 50 levels in the vertical, with level thickness increasing from 1 m at the surface to 200 m at a depth of 1,250 m and reaching the maximum thickness of 460 m at the bottom of the deep basins (approximately 5,730 m). BNAM uses partial cell for the bottom layer, which improves the representation of the bottom layer. We provide the monthly-mean U (zonal) V (meridional) and W (vertical) velocities for all 12 months and yearly-averaged current over these months from BNAM in nc format. Also, one mask nc file is given in this area, which includes grid coordinates and indicates the sea (value=1) and land (value=0) of the fields. Using Parcels and BNAM data we examined 1) the degree of vertical movement of particles released at different depths and locations; 2) the location of potential source populations for the deep-sea taxa protected by the closures; and 3) the degree of functional connectivity. We found enhanced connectivity over previously developed 2-D models and unexpected, current-driven, strong (to a maximum of about 1340 m) downward displacement at depth (particles released at 450, 1000 and 2250 m), with weaker upward displacement except for the release depth of 2250 m which showed upward movement of 955 m with a drift duration of 3 months. We provide the distributions of horizontal velocity vectors (cm/s) and vertical velocity contours (m/s x 10-4) at a) 100 m and b) 1,000 m depth in the Flemish Cap area of the northwest Atlantic. These data can be interpolated to reconstruct Figure 8 in our publication and could potentially be used to evaluate benthic pelagic coupling in the region, and be used in species distribution models. Wang, Z., Brickman, D., & Greenan, B.J.W. Characteristic evolution of the Atlantic Meridional Overturning Circulation from 1990 to 2015: An eddy-resolving ocean model study. Deep Sea Res. I. 149, 103056 (2019). https://doi.org/10.1016/j.dsr.2019.06.002.
DOI: 10.6084/m9.figshare.5808792.v1
title: ABAQUS Input File

description: This folder contains ABAQUS input file for head model and corresponding blast-induced skull flexure injury simulations.
DOI: 10.6084/m9.figshare.9878372.v2
title: PLOS-ONE 2019 DATA.xlsx

description: This should replace the original uploaded file which seemed to be corrupted for some reason.
DOI: 10.17632/4ght2d5pb2
title: Localized Risk Factors - Supplementary Code and Data

description: This repository holds processed data and the codes to reproduce the results of the paper "Localized Risk Factors: Performance Differentials Between State-Level and US Factor Models" by Oliver Budras, Maik Dierkes, and Florian Sckade. 
Please refer to the README of this repository for a walkthrough of the reproduction of the paper's results.
DOI: 10.17632/9s4wnsrb4r
title: Monthly Silver Price (New York and London) and Dollar Sterling Exchange rate (1878-1953)

description: The first tab of this file has 3 monthly average prices. The London silver price, the New York silver price and the Dollar-Sterling Exchange Rate. The second tab shows the sources from which this data was transcribed.
DOI: 10.6084/m9.figshare.24917619.v1
title: <b>Macroecological rules predict how biomass scales with species richness in nature</b>

description: Data and code from <b>Pigot et al 2025 </b><b>Macroecological rules predict how biomass scales with species richness in nature.</b>We are grateful to collaborators and staff who have contributed data, including the Rothamsted Insect Survey (RIS), a National Capability, which is funded by the Biotechnology and Biological Sciences Research Council under the Core Capability Grant BBS/E/C/000J0200. The UK Breeding Bird Survey is a partnership jointly funded by the British Trust for Ornithology, Royal Society for the Protection of Birds and Joint Nature Conservation Committee, with fieldwork conducted by volunteers. Data on copepods were sourced from Australia’s Integrated Marine Observing System (IMOS), which is enabled by the National Collaborative Research Infrastructure Strategy (NCRIS). Earthworm data was collated as part of the ‘sWorm’ workshop, funded by sDiv (the Synthesis Centre of the German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig (DFG FZT 118)). This study uses data for for diatoms, dinoflagellates and coccolithophores from The Atlantic Meridional Transect, provided by the British Oceanographic Data Centre and funded by the UK Natural Environment Research Council through its National Capability Long-term Single Centre Science Programme, Climate Linked Atlantic Sector Science (grant number NE/R015953/1).
DOI: 10.6084/m9.figshare.20059649.v1
title: scRNA-Seq of mouse immortalized aortic smooth muscle cells treated with IL1b

description: <strong>Methods</strong> Mouse immortalized aortic smooth muscle cells (MOVAS; ATCC cell line CRL-2797) were grown in DMEM supplemented with 10% FBS, 100 U/ml penicillin, 100 μg/ml streptomycin and 200 μg/ml geneticin in a 37 °C incubator with 5% CO2. Cells were cultured in 12-well plates to approximately 70% confluency. Prior to experimental treatments, cells were incubated for 24 h in serum-starvation medium (DMEM supplemented with 0.2% BSA). Subsequently, the growth medium was replaced with serum-starvation medium supplemented with recombinant interleukin-1β (IL-1β; Sino Biological #10139HNAE) at 25 or 50 ng/ml and incubated for a further 24 or 48 h. The different IL-1β treatments were timed to end concurrently and, after trypsinization, the cells were pooled in equal counts to obtain a mixture of cells at different phases of the IL-1β response. As a control treatment, 24 h serum-starved cells were placed in fresh serum starvation medium for a further 48 h. The Chromium Single Cell 3’ Kit (v3 Chemistry; 10x Genomics) was used to prepare scRNA-Seq libraries for control and IL-1β treated cells in separate lanes. Libraries were sequenced on an Illumina NextSeq 550 instrument and reads were processed using the Cell Ranger pipeline (version 3.0.2; 10x Genomics) and the mm10 reference package (version 3.0.0). Additional cell quality filtering was carried out using Seurat (version 3.1.0; PMID 31178118), retaining the cell barcodes with 1000-5000 genes, 2000-12500 UMI-s and &lt;15% mitochondrial reads. <strong>File format</strong> Tab-separated non-sparse matrices of raw counts for scRNA-Seq cells that passed cell QC (described above). Files are compressed with gzip. <strong>Samples</strong> 1) MOVAS_IL1b_24h_48h_pooled [1355 cells (columns) and 31053 genes (rows)] 2) MOVAS_serum_starved_control [1337 cells (columns) and 31053 genes (rows)] <strong>Publication reference</strong> To be added.
DOI: 10.6084/m9.figshare.23995419.v1
title: NNI Dataset updated

description: This dataset is an update of the dataset published by Ciampitti et al., 2022 (A global dataset to parametrize critical nitrogen dilution curves for major crop species). This dataset contains the result of extracting data of plant biomass, plant N concentration and harvest yield.
DOI: 10.17632/72pkt8srth
title: Electromagnetic Scattering Parameters and Nicholson-Ross-Weir (NRW) Data Results of Carbon Fibers 2x2 weave and Polydimethylsiloxane over the X-band (8.2 - 12.4 GHz)

description: The electromagnetic characterization was performed using a Vector Network Analyzer (VNA) model N5235A, with the Agilent software package. The 11644A WR-90 waveguide mechanical calibration kit was used to calibrate the VNA in the X-band frequency range (8.2 to 12.4 GHz), transverse electric (TE10) mode. Simulation data were obtained with the Altair FEKO®, version 2021.2.4, computational electromagnetics (CEM) module with the full-wave domain frequency solution method of moments (MoM).
Scattering Parameters (S–Parameters (S11; S21; S22; S12)).
Relative complex permittivity (εr = ε’ – jε”) and the relative complex permeability (μr = μ’ – jμ”)
DOI: 10.17632/cw4hkpygtn
title: Creative Responses to Climate Change: How Corporate ESG Ratings Reflect Environmental Adaptation and Innovation

description: This study, a meticulous analysis of 4,811 companies' Environmental, Social, and Governance (ESG) ratings from 2018 to 2021, ventures into the uncharted intersections of corporate sustainability, creative environmental stewardship, and climate anomalies.
DOI: 10.17632/kmxz7fgydx
title: Seeing or believing in hyperplexed spatial proteomics via antibodies.

description: Supplementary data for the manuscript "Seeing or believing in hyperplexed spatial proteomics via antibodies."
The content of this online repository is explained in the .txt file "FolderContent-ReadMe". Please download and read.
DOI: 10.17632/s3vhpkpz2n
title: Data for: Competition exclusion mediated by fencing duration and shrub cover drives the herbaceous community assembly in the shrub interspaces

description: Basic data used in the article
DOI: 10.6084/m9.figshare.12421136.v1
title: Tetrapod presence absence from The origin of tetrapod herbivory: effects on local plant diversity

description: The origin of herbivory in the Carboniferous was a landmark event in the evolution of terrestrial ecosystems, increasing ecological diversity in animals but also giving them greater influence on the evolution of land plants. We evaluate the effect of early vertebrate herbivory on plant evolution by comparing local species richness of plant palaeofloras with that of vertebrate herbivores and herbivore body size. Vertebrate herbivores became diverse and achieved a much greater range of body sizes across the Carboniferous–Permian transition interval. This coincides with an abrupt reduction in local plant richness that persists throughout the Permian. Time-series regression analysis supports a negative relationship of plant richness with herbivore richness but a positive relationship of plant richness with minimum herbivore body size. This is consistent with studies of present-day ecosystems in which increased diversity of smaller, more selective herbivores places greater predation pressures on plants, while a prevalence of larger bodied, less selective herbivores reduces the dominance of a few highly tolerant plant species, thereby promoting greater local richness. The diversification of herbivores across the Carboniferous–Permian boundary, along with the appearance of smaller, more selective herbivores like bolosaurid parareptiles, constrained plant diversity throughout the Permian. These findings demonstrate that the establishment of widespread vertebrate herbivory has structured plant communities since the late Palaeozoic, as expected from examination of modern ecosystems, and illustrates the potential for fossil datasets in testing palaeoecological hypotheses.
DOI: 10.6084/m9.figshare.27094135.v1
title: western blot.rar

description: Full protocol for western blot.
DOI: 10.6084/m9.figshare.28267697.v1
title: Enhanced reactivity of <i>syn</i>-CH<sub>3</sub>CHOO with H<sub>2</sub>O by a roaming mechanism in the entrance channel

description: Experimental and Theoretical Supplementary Data.
DOI: 10.6084/m9.figshare.29064443.v1
title: <b>Microplastic occurrence in the diet of green sea turtles (</b><b><i>Chelonia mydas</i></b><b>) from the coastal region of São Paulo, Brazil</b>

description: Microplastics (MPs) represent the main vector of pollution in the marine environment. Originating from the slow degradation process of plastics into smaller particles, MPs vary in size between 1 and 5 mm. Their ability to adsorb and transport contaminants, disperse invasive organisms, and be accidentally ingested by marine animals makes these particles an increasing threat to the health of coastal ecosystems and the conservation of marine life. Ingestion of microplastics leads to digestive tract blockage, physiological alterations, changes in feeding behavior, or even total debilitation of the animal. This study analysed and quantified the presence, typology, and colour of microplastics in the gastrointestinal contents of 218 green sea turtle (<i>Chelonia mydas</i>) samples from the Central-South and Northern coasts of São Paulo. Microplastics with an average size between 3 and 4 mm, mostly secondary type and predominantly of white colour were detected in 45.9% of the analyzed samples. Proportionally, microplastics were found in 75% of samples from the Central-South Coast, compared to 35% from the Northern Coast study region. This difference in occurrence is attributed to the higher anthropogenic impact from nearby port and industrial activities. This study enhances our understanding of plastic ingestion by marine fauna. It highlights the urgent need to implement strategies to prevent, reduce, and mitigate plastic pollution and its detrimental effects on the coastal environment.
DOI: 10.6084/m9.figshare.3501911.v5
title: HCP-MMP1.0 projected on MNI2009a GM (volumetric) in NIfTI format

description: Based on the Freesurfer version of the HCP-MMP1.0 parcellation (https://figshare.com/articles/HCP-MMP1_0_projected_on_fsaverage/3498446), I created a volumetric version of the HCP-MMP1.0 parcellation that was published by Glasser et al. (Nature, 2016).<br>Please note that this volumetric version should be used and applied with great care – and under certain circumstances only. According to the authors of the original work, this fine parcellation could not have been achieved on a volumetric basis but was only realizable using a multimodal surface-based analysis (and co-registration).Thus, this volumetric version of their work is not ideally suited to be used for standard brain-mapping approaches that use (volumetric) nonlinear deformations. It is rather thought to be an accompanying volumetric version to the surface-based version. Also, it could be used for comparative purposes within MNI space (e.g. to compare it to other cortical parcellations available in this space such as the AAL, Hammersmith, AICHA, Mindboggle 101 atlases).<br>The conversion to volumetric space (projection to the ICBM 152 2009a NLIN version within MNI space) is based on the fsaverage version of the HCP-MMP1.0 available here (https://figshare.com/articles/HCP-MMP1_0_projected_on_fsaverage/3498446).<br>See Matlab code file for details and/or to project to different MNI templates.
DOI: 10.6084/m9.figshare.878035.v4
title: IJShapeSmoothing: An ImageJ Plugin for smoothing objects in binary scenes

description: IJShapeSmoothing is an ImageJ Plugin for smoothing objects in binary scenes. For smoothing, each object contour is reconstruced by its first x fourier descriptors <strong>Installation</strong> Please copy the Shape_Smoothing_.jar in your ImageJ Plugin directory If you use fiji, you can use our update site: http://sites.imagej.net/Biomedgroup/ <br>
DOI: 10.17632/cn8rp275m4
title: Thermodynamic analysis of hydrocarbon reforming raw data

description: The dataset describes the equilibrium composition of species obtained by hydrocarbon reforming processes at different conditions of temperature and pressure. The reforming feed is described based on oxygen to carbon and hydrogen to carbon ratios. The dataset is obtained using the RGIBBS reactor in Aspen Plus (v11) based on the SRK equation of state.
DOI: 10.6084/m9.figshare.21262533.v1
title: Raw Data

description: Data sets used in the manuscript "Practical Considerations for Quantitative Light Sheet Fluorescence Microscopy". <br> DOI: 10.1038/s41592-022-01632-x
DOI: 10.6084/m9.figshare.28770785.v1
title: Shared datasets:Evaluating microclimatic alterations under rainout shelters: intended and unintended effects of drought manipulations.

description: Rainout shelters are research tools commonly used that simulate drought conditions in climate change experiments, allowing researchers to investigate the effects of reduced precipitation on ecosystem processes. However, these structures can introduce unintended microclimatic effects, such as changes in soil temperature and solar radiation, which can affect the interpretation of drought simulations. This study, conducted at a long-term ecological research station in a Mediterranean shrubland ecosystem, assessed the intended and unintended microclimatic effects of different rainout shelter designs on soil moisture, temperature, and solar radiation. Using sensors, we monitored microclimatic conditions beneath two rainout shelter design types simulating multi-year extreme drought with a 66% rainfall reduction. While rainout shelters effectively reduced soil moisture, the magnitude of reduction was dependant on rainfall distribution. Additionally, rainout shelters increased soil temperatures in winter and decreased them in summer, likely due to wind-blocking and shading. Solar radiation was reduced by up to 40%, depending on shelter design. This study demonstrates how rainout shelters regulate soil moisture, but also unintentionally alter temperature and solar radiation, revealing seasonally contrasting thermal effects and non-linear soil moisture reductions which may complicate the interpretation of drought manipulation experiments. This study also underscores the importance of tailoring experimental setups to specific site conditions, such as soil texture and natural rainfall variability to enhance experimental aims and ecological relevance. By addressing key methodological challenges, this study advances rainfall manipulation experiments and improves predictions of ecosystem responses to climate change.<br>
DOI: 10.17632/2vtbmwsz5b
title: DEVELOPMENT OF A COMPUTER APPLICATION FOR HANDICAPPED PEOPLE TO USE GMAIL

description: Handicapped people are a group of Internet and computer users. Some assistive technologies are designed for these people depending on their voice to apply voice commands to use technology. Gmail is one of the freely available and popular e-mail services and it has currently become most of people using Gmail as communication way with each other. The main aim of this paper is to introduce a computer application called HPG that can control and navigation the Gmail by voice commands. H_P_G helps handicapped people to send and receive their own emails, easily login and logout to their Gmail accounts, attach files if desired, and send and receive emails. The advantages of the developed system are that it is very low-cost, easy to use, and helps handicapped people to be in contact with their friends and family using their Gmail accounts. The developed application should also be useful to other researchers who wish to develop computer based applications for the handicapped people.
DOI: 10.17632/hh3rvcpxp3
title: NORMATIVE REFERENCE VALUES OF Y-BALANCE TEST IN RELATION TO BMI IN HEALTHY YOUNG MALES AND FEMALES

description: The Y-Balance-Test (YBT) is a valuable field-based assessment tool for evaluating dynamic balance performance in both lower and upper extremities. By measuring the ability to maintain a stable base of support during prescribed movements, the YBT offers insights into dynamic postural control essential for executing movement skills, particularly in athletic populations. Understanding BMI's influence on balance is vital for effective weight management and injury prevention strategies. Therefore, understanding the relationship between BMI and balance levels is crucial for developing effective intervention strategies aimed at promoting weight management and enhancing postural stability, thereby reducing the risk of injuries and improving overall quality of life.
DOI: 10.6084/m9.figshare.26894011.v2
title: Supplementary code and datasets for eDL-cSIM

description: We provide the open-source code and associated dataset of eDL-cSIM.
DOI: 10.17632/j448jgx6p2
title: ErdoWatch - RTE Speeches 2014-2020 (COMPLETE VERSION)

description: Word count and word frequency count of Erdogan's speeches between 2014-2020
DOI: 10.17632/nb59ydy5nm
title: Raw data (Supplemental File) - Surgical Registrars’ Exposure To Trauma Laparotomy In A Level One Trauma Centre In New Zealand: A Retrospective Cohort Study  

description: The data within this dataset was collected retrospectively to portray the exposure of New Zealand registrars to Trauma Laparotomies.
DOI: 10.17632/s4dtmfmzxw
title: Semantic Coherence Dataset - SCD

description: Textual data are central to assess metrics built on top of language models. The dataset contains speech transcripts, which were arranged into two main classes, intended to experiment on intra-subject semantic coherence, and on inter-subject semantic coherence. Transcripts collected have been extracted from talks during almost 13 hours (overall 12:45:17) for the former class, and almost 30 hours (29:47:34) for the latter one.
Data delivered in this dataset have been employed to investigate whether the perplexity metric provides reliable results, both in within-subject condition and in across-subject condition. More specifically, perplexity is a measure originally conceived to assess the probabilistic inference properties of language models: it has been recently proved to be an appropriate device to categorize speech transcripts from healthy subjects vs. subjects suffering from Alzheimer Disease. This dataset has been employed to investigate the reliability of the perplexity metrics; data herein can be reused to conduct analysis on measures that rely on probabilistic models and that are aimed at analyzing the linguistic features of text documents.
DOI: 10.6084/m9.figshare.28879679.v2
title: <b>WTBM-LS：第一个多模态数据集</b><b>为</b><b>w</b><b>工业</b><b>t</b><b>乌尔比恩</b><b>b</b><b>装载</b><b>m</b><b>期间监视</b><b>l</b><b>ightning</b><b>s</b><b>trikes</b>

description: <b>Lightning strikes pose a significant threat to the structural integrity and operational performance of wind turbine blades. Due to the high probability of lightning strikes but the difficulty in capturing their dynamic data, obtaining comprehensive data on blades subjected to lightning strikes is challenging. This study presents a rare multimodal dataset for condition monitoring of multimodal wind turbine blades subjected to lightning strikes. The dataset collected from a wind farm in China. It includes vibration, load, and strain measurements from fiber optic load sensors and fiber optic accelerometer sensors. It provides real-time records of blade operational status and damage assessments after strikes. The dataset is intended to promote the development of predictive models for lightning strike detection and blade damage assessment, ultimately enhancing the monitoring, maintenance, and operational optimization of wind energy facilities. The dataset is publicly available for researchers to conduct in-depth studies in fields such as machine learning, condition monitoring, and fault prediction, contributing to the resilience and reliability of wind turbine operations.</b>
DOI: 10.17632/znxxsgn2ky
title: Dataset for: Scan-to-BIM-to-Sim: Automated reconstruction of digital and simulation models from point clouds with applications on bridges

description: The dataset consists of raw point cloud data (.pcd file) of an Aqueduct Bridge obtained through terrestrial laser scanning. The bridge is located on the A38 near the University of Birmingham (C3W6+RX Birmingham) and carries a canal in the centre, allowing pedestrians to pass on both sides.