cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7755965
title: Additional file 6: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S5. C&gt;U RNA editing events shared between NK cells and 293T/APOBEC3A, and NK cells, 293T/APOBEC3A and 293T/APOBEC3G overexpression systems. (XLSX 14 kb)
DOI: 10.5281/zenodo.10605987
title: Simulation Data: Conditional Cooperation with Longer Memory

description: Simulation data for the evolutionary process for the project "Conditional Cooperation with Longer Memory".
DOI: 10.5281/zenodo.10605988
title: Simulation Data: Conditional Cooperation with Longer Memory

description: Simulation data for the evolutionary process for the project "Conditional Cooperation with Longer Memory".
DOI: 10.6084/m9.figshare.7755965.v1
title: Additional file 6: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S5. C&gt;U RNA editing events shared between NK cells and 293T/APOBEC3A, and NK cells, 293T/APOBEC3A and 293T/APOBEC3G overexpression systems. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.7755971
title: Additional file 7: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S6. A&gt;I RNA editing events in RADAR database that are induced by hypoxia in NK cells. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7755971.v1
title: Additional file 7: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S6. A&gt;I RNA editing events in RADAR database that are induced by hypoxia in NK cells. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7231688
title: Additional file 2: of SeqOthello: querying RNA-seq experiments at scale

description: Details of SRAÂ samples used for performance comparison between SeqOthello and other SBT-based methods.Â (XLSX 53 kb)
DOI: 10.6084/m9.figshare.7231688.v1
title: Additional file 2: of SeqOthello: querying RNA-seq experiments at scale

description: Details of SRAÂ samples used for performance comparison between SeqOthello and other SBT-based methods.Â (XLSX 53 kb)
DOI: 10.6084/m9.figshare.7755977
title: Additional file 8: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S7. Evolutionary conservation analysis of all non-synonymous C&gt;U RNA editing sites. (XLSX 18 kb)
DOI: 10.6084/m9.figshare.7755977.v1
title: Additional file 8: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S7. Evolutionary conservation analysis of all non-synonymous C&gt;U RNA editing sites. (XLSX 18 kb)
DOI: 10.5066/p90sg8yb
title: Random forest classification data developed from multitemporal Landsat 8 spectral data and phenology metrics for a subregion in Sonoran and Mojave Deserts, April 2013 &ndash; December 2020

description: These data were compiled for the creation of a continuous, transboundary land cover map of Bird Conservation Region 33, Sonoran and Mojave Deserts (BCR 33). Objective(s) of our study were to, 1) develop a machine learning (ML) algorithm trained to classify vegetation land cover using remote sensing spectral data and phenology metrics from 2013-2020, over a large subregion of the Sonoran and Mojave Deserts BCR, 2) Calibrate, validate, and refine the final ML-derived vegetation map using a collection of openly sourced remote sensing and ground-based ancillary data, images, and limited fieldwork, and 3) Harmonize a new transboundary classification system by expanding existing land cover mapping resources from the United States portion of BCR 33 into Mexico. These data represent the final land cover maps produced by the developed random forest model, with additional ancillary labels for urban and agriculture areas. These data were created within a subregion of the Sonoran and Mojave Deserts BCR which spans from Phoenix, Arizona, US to Hermosillo, Sonora, Mexico for the time of April 2013 to December 2020. These data were created by the University of Arizona Vegetation Index and Phenology Lab who collected, processed, and analyzed all of the data and developed the random forest model used to produce the final mapping results. These data can be used to guide land management and conservation decisions within the Sonoran and Mojave Deserts BCR.
DOI: 10.6084/m9.figshare.7755980
title: Additional file 9: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S8. Gene expression levels in normoxic and hypoxic NK cells. (XLSX 3002 kb)
DOI: 10.6084/m9.figshare.7755980.v1
title: Additional file 9: of Mitochondrial hypoxic stress induces widespread RNA editing by APOBEC3G in natural killer cells

description: Table S8. Gene expression levels in normoxic and hypoxic NK cells. (XLSX 3002 kb)
DOI: 10.5281/zenodo.3753372
title: S65 | UATHTARGETSGC | University of Athens GC-APCI-HRMS Target List

description: This is the collection associated with list S65 UATHTARGETSGC - University of Athens GC-APCI-HRMS Target List on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ GC-APCI-HRMS target list of University of Athens. Provided by the research group of Prof. Nikolaos Thomaidis (http://trams.chem.uoa.gr/) and hosted on the NORMAN Suspect List Exchange (https://www.norman-network.com/nds/SLE/). DOI: 10.5281/zenodo.3753372
DOI: 10.6084/m9.figshare.7231733
title: Additional file 6: of SeqOthello: querying RNA-seq experiments at scale

description: Details of TCGA samples used to contruct SeqOthello as well as fusion occurrences detected by querying the index.Â (XLSX 3612 kb)
DOI: 10.6084/m9.figshare.7231733.v1
title: Additional file 6: of SeqOthello: querying RNA-seq experiments at scale

description: Details of TCGA samples used to contruct SeqOthello as well as fusion occurrences detected by querying the index.Â (XLSX 3612 kb)
DOI: 10.6084/m9.figshare.8280332
title: MOESM1 of Label-free quantitative proteomics identifies transforming growth factor β1 (TGF-β1) as an inhibitor of adipogenic transformation in OP9-DL1 cells and primary thymic stromal cells

description: Additional file 1: Table S1. The complete list of 161 pathways from enrichment analysis of differentially expressed proteins according to KEGG database.
DOI: 10.6084/m9.figshare.8280332.v1
title: MOESM1 of Label-free quantitative proteomics identifies transforming growth factor β1 (TGF-β1) as an inhibitor of adipogenic transformation in OP9-DL1 cells and primary thymic stromal cells

description: Additional file 1: Table S1. The complete list of 161 pathways from enrichment analysis of differentially expressed proteins according to KEGG database.
DOI: 10.6073/pasta/59add23bf18df839a352a7f71e411309
title: Greenhouse experiment (FCE) in April and August 2001: Responses of neotropical mangrove saplings to the combined effect of hydroperiod and salinity/Biomass

description: A greenhouse experiment was performed for 13.5 months to evaluate the effect of salinity and hydroperiod on seedling growth rates of 2 mangrove species( Laguncularia racemosa and Rizhophora mangle). Data analyses are currently being performed.
DOI: 10.5066/p9r3hlvz
title: Bat activity and insect abundance data along the Colorado River in Grand Canyon, AZ

description: These data were compiled to improve our understanding of bat foraging along the Colorado River in Grand Canyon. Objectives of our study were to determine whether bat activity was influenced primarily by variation in prey availability relative to other environmental or geomorphic factors. These data represent 1,428 paired samples of bat activity and insect abundance calculated as catch rates collected on 611 sampling nights at 410 sampling sites throughout a 470 km segment of river. These data were collected from April to October in 2017-2020 at recreational camps along the Colorado River in Grand Canyon between Glen Canyon Dam and Pearce Ferry. These data were collected through a U.S. Geological Survey led community science program that recruited recreational river runners to sample insects using light traps and to record bat activity using handheld acoustic recorders. Sampling was conducted for one hour at dusk during each night of the river expedition. These data can be used to interpret changes in total bat activity and insect catch rates over time and space relative to environmental variables.
DOI: 10.6084/m9.figshare.12999001
title: Full-length tran sequencing provides insight into lignan and lignin metabolism relation

description: Flax (<i>Linum usitatissimum</i> L.) is an important economic crop worldwide. The lignin content of flax stems directly determines the quality of flax fiber, and excessively high lignin content in the fiber leads to pollutant discharge by the textile industry. Flax seeds also contain lignans, a group of compounds that are structurally similar to lignin and highly beneficial for human health. The biosynthesis of lignan and lignin occurs in the same metabolic pathway. To elucidate the metabolic relationship between these two compounds and the regulatory nodes of their metabolic processes, third generation (Iso-Seq) and second generation (Illumina) sequencing technologies were used in this study to obtain the transcriptomes of a pair of flax cultivars with significant differences in lignan content. The results showed that the differentially expressed genes (DEGs) are significantly enriched in the lignin and lignan biosynthesis pathways. Ten genes with significant differences in expression (|Log2 FC|&gt;4) were selected for quantitative real-time polymerase chain reaction (qRT-PCR) analysis. The expression levels of these genes all were significantly different in Shuangya 4 and NEW at different stages of flax seed and stem development. We speculated that these genes were most likely closely related to the lignan and lignin metabolism. We also found that the lignan and lignin content are significantly negatively correlated with each other during flax seed and stem development. The findings of this study provide a scientific basis for the application of biotechnological methods to the development of new high-quality flax cultivars with high lignan and low lignin content.
DOI: 10.6084/m9.figshare.12999001.v1
title: Full-length tran sequencing provides insight into lignan and lignin metabolism relation

description: Flax (<i>Linum usitatissimum</i> L.) is an important economic crop worldwide. The lignin content of flax stems directly determines the quality of flax fiber, and excessively high lignin content in the fiber leads to pollutant discharge by the textile industry. Flax seeds also contain lignans, a group of compounds that are structurally similar to lignin and highly beneficial for human health. The biosynthesis of lignan and lignin occurs in the same metabolic pathway. To elucidate the metabolic relationship between these two compounds and the regulatory nodes of their metabolic processes, third generation (Iso-Seq) and second generation (Illumina) sequencing technologies were used in this study to obtain the transcriptomes of a pair of flax cultivars with significant differences in lignan content. The results showed that the differentially expressed genes (DEGs) are significantly enriched in the lignin and lignan biosynthesis pathways. Ten genes with significant differences in expression (|Log2 FC|&gt;4) were selected for quantitative real-time polymerase chain reaction (qRT-PCR) analysis. The expression levels of these genes all were significantly different in Shuangya 4 and NEW at different stages of flax seed and stem development. We speculated that these genes were most likely closely related to the lignan and lignin metabolism. We also found that the lignan and lignin content are significantly negatively correlated with each other during flax seed and stem development. The findings of this study provide a scientific basis for the application of biotechnological methods to the development of new high-quality flax cultivars with high lignan and low lignin content.
DOI: 10.6084/m9.figshare.25275916
title: Actionable driver oncogene mutations were excluded from neoadjuvant chemoimmunotherapy of non-small cell lung cancer.

description: These known actionable driver oncogene mutations were excluded from neoadjuvant chemoimmunotherapy of non-small cell lung cancer in a retrospective cohort study, as they had corresponding target treatments.
DOI: 10.6084/m9.figshare.25275916.v1
title: Actionable driver oncogene mutations were excluded from neoadjuvant chemoimmunotherapy of non-small cell lung cancer.

description: These known actionable driver oncogene mutations were excluded from neoadjuvant chemoimmunotherapy of non-small cell lung cancer in a retrospective cohort study, as they had corresponding target treatments.
DOI: 10.6084/m9.figshare.25276534
title: Stable isotope analysis of a coastal tallgrass prairie food web in Texas

description: This is the data to accompany the paper: Death by a thousand ants: Predation on grasshoppers by invasive ants in a grassland
DOI: 10.6084/m9.figshare.25276534.v1
title: Stable isotope analysis of a coastal tallgrass prairie food web in Texas

description: This is the data to accompany the paper: Death by a thousand ants: Predation on grasshoppers by invasive ants in a grassland
DOI: 10.6084/m9.figshare.7231856
title: Additional file 1: of Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing

description: Table S1. The frequencies of accurate NHEJ in repair of Cas9-induced DSBs. Table S2. Top five group I NHEJ events in repair of adjacently paired DSBs induced by paired Cas9-gRNA. Table S3. Most of the +â 1 insertions at repair junctions are templated insertions. Table S4. The effect of accurate NHEJ on the frequency of out-of-frame and in-fame editing. Table S5. Sequence information on gRNAs, primers, and genome editing target sites. (XLSX 216 kb)
DOI: 10.6084/m9.figshare.7231856.v1
title: Additional file 1: of Harnessing accurate non-homologous end joining for efficient precise deletion in CRISPR/Cas9-mediated genome editing

description: Table S1. The frequencies of accurate NHEJ in repair of Cas9-induced DSBs. Table S2. Top five group I NHEJ events in repair of adjacently paired DSBs induced by paired Cas9-gRNA. Table S3. Most of the +â 1 insertions at repair junctions are templated insertions. Table S4. The effect of accurate NHEJ on the frequency of out-of-frame and in-fame editing. Table S5. Sequence information on gRNAs, primers, and genome editing target sites. (XLSX 216 kb)
DOI: 10.25402/fon.19290482
title: Supplementary Table – Incidence, predictors, and six-month overall outcome of acute kidney injury in Chinese patients receiving PD-1 inhibitor

description: <b>Supplementary
 table 1.</b> Incidence, predictors,
 and six-month overall outcome of acute kidney injury in Chinese patients
 receiving PD-1 inhibitor
 <i>Risk factors for
 AKI</i>
DOI: 10.25402/fon.19290482.v1
title: Supplementary Table – Incidence, predictors, and six-month overall outcome of acute kidney injury in Chinese patients receiving PD-1 inhibitor

description: <b>Supplementary
 table 1.</b> Incidence, predictors,
 and six-month overall outcome of acute kidney injury in Chinese patients
 receiving PD-1 inhibitor
 <i>Risk factors for
 AKI</i>
DOI: 10.6084/m9.figshare.7231862
title: Additional file 2: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

description: Table S6. The nucleotide sequences of real-time PCR primers. Table S1. A summary of sequence assembly after illumine sequencing. L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation, the number after the dash indicates replicates. Table S2. A summary of assembled reads blasting to the tung tree genomic sequences. Table S3. A summary of differentially expressed genes (DEGs). L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation. Table S4. KEGG enrichments analysis for seven comparisons. Comparisons were: H35 vs. H49, L35 vs. L49, L7 vs. H7, L14 vs. H14, L21 vs. H21, L35 vs. H35, L49 vs. H49. (L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation.). Table S5. A summary of DEGs related to oil accumulation detected in this study. (XLSX 4911 kb)
DOI: 10.6084/m9.figshare.7231862.v1
title: Additional file 2: of Molecular mechanism of the extended oil accumulation phase contributing to the high seed oil content for the genotype of tung tree (Vernicia fordii)

description: Table S6. The nucleotide sequences of real-time PCR primers. Table S1. A summary of sequence assembly after illumine sequencing. L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation, the number after the dash indicates replicates. Table S2. A summary of assembled reads blasting to the tung tree genomic sequences. Table S3. A summary of differentially expressed genes (DEGs). L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation. Table S4. KEGG enrichments analysis for seven comparisons. Comparisons were: H35 vs. H49, L35 vs. L49, L7 vs. H7, L14 vs. H14, L21 vs. H21, L35 vs. H35, L49 vs. H49. (L indicated Tree L, with low final oil seed content; H indicated Tree H, with high final seed oil content; these were followed by a number that indicated the days after the start point of oil accumulation.). Table S5. A summary of DEGs related to oil accumulation detected in this study. (XLSX 4911 kb)
DOI: 10.5281/zenodo.10206464
title: "Contrasting responses to increasing dissolved iron on photosynthesis and O2 availability in the gastric cavity of two Mediterranean corals." Dataset

description: Dataset of iron levels, coral metabolic rates, PAM, Oxygen microprofiles
DOI: 10.5281/zenodo.10206465
title: "Increasing dissolved iron limits photosynthesis and reduces the O2 availability in the gastric cavity of two Mediterranean corals" Dataset

description: Dataset of Coral Metabolic rates, PAM, Oxygen microprofiles
DOI: 10.5281/zenodo.10664495
title: "Increasing dissolved iron limits photosynthesis and reduces the O2 availability in the gastric cavity of two Mediterranean corals" Dataset

description: Dataset of iron levels, coral metabolic rates, PAM, Oxygen microprofiles
DOI: 10.5281/zenodo.10697973
title: "Contrasting responses to increasing dissolved iron on photosynthesis and O2 availability in the gastric cavity of two Mediterranean corals." Dataset

description: Dataset of iron levels, coral metabolic rates, PAM, Oxygen microprofiles
DOI: 10.6084/m9.figshare.20339122
title: Efficacy and safety of galcanezumab for migraine: evidences from direct and indirect comparisons

description: The optimal dose of galcanezumab for patients with migraine remains uncertain. Therefore, we conducted a network meta-analysis to assess the comparative effectiveness of various doses of galcanezumab for this group of patients. A systematically search was implemented in several databases including the PubMed, Ovid MEDILNE, Ovid EMBASE and Cochrane Library from inception of the databases until 31 August 2020. Only randomized clinical trials of adults with migraine that assessed galcanezumab therapy and reported clinical outcomes were included. The primary efficacy outcome was monthly change in migraine headache days (MHDs). The primary safety outcome was treatment-emergent adverse events (TEAEs). Overall, eight randomized clinical trials included 4,720 patients, were assessed in our systematic review. In terms of efficacy, galcanezumab 120 and 240 mg significantly reduced monthly MHDs (MD −2.02, 95% CrI −2.62 to −1.42; MD −2.06, 95% CrI −2.74 to −1.36, respectively) compared to the placebo. In terms of safety, galcanezumab 120, 150 mg and 240 mg significantly increased incidences of adverse events (RR 1.11, 95% CrI 1.03–1.20; RR 1.85, 95% CrI 1.27–2.81; RR 1.15, 95% CrI 1.06–1.24, respectively). Galcanezumab 240 mg offers the first level in terms of efficacy outcomes and galcanezumab 150 mg ranks the first level in terms of increasing treatment-emergent adverse events among adult patients with migraine. Attention should be devoted to the potential risk of adverse events, especially for injection site pain when the drug is administered subcutaneously.
DOI: 10.6084/m9.figshare.20339122.v1
title: Efficacy and safety of galcanezumab for migraine: evidences from direct and indirect comparisons

description: The optimal dose of galcanezumab for patients with migraine remains uncertain. Therefore, we conducted a network meta-analysis to assess the comparative effectiveness of various doses of galcanezumab for this group of patients. A systematically search was implemented in several databases including the PubMed, Ovid MEDILNE, Ovid EMBASE and Cochrane Library from inception of the databases until 31 August 2020. Only randomized clinical trials of adults with migraine that assessed galcanezumab therapy and reported clinical outcomes were included. The primary efficacy outcome was monthly change in migraine headache days (MHDs). The primary safety outcome was treatment-emergent adverse events (TEAEs). Overall, eight randomized clinical trials included 4,720 patients, were assessed in our systematic review. In terms of efficacy, galcanezumab 120 and 240 mg significantly reduced monthly MHDs (MD −2.02, 95% CrI −2.62 to −1.42; MD −2.06, 95% CrI −2.74 to −1.36, respectively) compared to the placebo. In terms of safety, galcanezumab 120, 150 mg and 240 mg significantly increased incidences of adverse events (RR 1.11, 95% CrI 1.03–1.20; RR 1.85, 95% CrI 1.27–2.81; RR 1.15, 95% CrI 1.06–1.24, respectively). Galcanezumab 240 mg offers the first level in terms of efficacy outcomes and galcanezumab 150 mg ranks the first level in terms of increasing treatment-emergent adverse events among adult patients with migraine. Attention should be devoted to the potential risk of adverse events, especially for injection site pain when the drug is administered subcutaneously.
DOI: 10.5281/zenodo.10697960
title: Dataset related to article: PHENOTYPING MITOCHONDRIAL DNA-RELATED DISEASES IN CHILDHOOD: A COHORT STUDY OF 150 PATIENTS.

description: database paper mtDNA
DOI: 10.5281/zenodo.10697961
title: Dataset related to article: PHENOTYPING MITOCHONDRIAL DNA-RELATED DISEASES IN CHILDHOOD: A COHORT STUDY OF 150 PATIENTS.

description: database paper mtDNA