cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/xbxrc6d3xw.1
title: A co-segmentation dataset characterized by simple background(MLMR-COS)

description: The new proposed dataset for evaluating co-segmentation algorithms, which contains 66 image groups with 18 images in each and the pixel-wise hand-annotated ground truth. The dataset is characterized by simple background produced from a single color. It looks simple but actually very challenging for current co-segmentation algorithms, because of four diﬃcult cases in it: easy confused foreground with background, transparent regions in objects, minor holes in objects, and shadows.
DOI: 10.3886/e105960v1
title: Competing Stimuli and Preference Assessments to Reduce Self-Injurious Behavior and Motor Stereotypy

description: There are many studies that
have examined the use of competing stimuli to reduce challenging behavior, but there
is limited research examining if preference of a stimulus impacts its
effectiveness as a competing stimulus.  This study examined whether using a competing
stimulus assessment in conjunction with a paired-stimulus preference assessment
increased the capability to identify stimuli to reduce self-injurious behavior
and motor stereotypy in a 17-year-old male diagnosed with autism spectrum
disorder. Initially, a single item based on both a competing stimulus
assessment and a paired-stimulus preference assessment was used during
sessions. After results suggested satiation of the original stimulus, another stimulus
was used; however, this second stimulus also appeared to contact satiation. A
second procedure, provided the participant the continuous choice of stimuli
during each session. Results were variable, but an overall inverse relationship
between competing stimulus engagement and challenging behavior was found during
treatment phases.
DOI: 10.5061/dryad.tk82cd1/1
title: Post-Cambrian Phanerozoic raw occurrences

description: This is the raw occurrence dataset used for analyses, downloaded from the Paleobiology Database (http://www.paleobiodb.org/) on 18th December ‎2017
DOI: 10.5061/dryad.tk82cd1/2
title: Geological stage boundaries for analysis

description: These give the temporal bins that the occrrence and environmental data were binned into.
DOI: 10.5061/dryad.tk82cd1/3
title: Overall extinction rates

description: This file contains 100 subsampled iterations for the overall extinction rates to plot a basic version of Figure 1. Use with 'TimeBinningCode.R'
DOI: 10.5061/dryad.tk82cd1/4
title: Tropical and temperate genus extinction rates

description: This file contains 100 subsampled iterations for the tropical and temperate affinity genera extinction rates to plot a basic version of Figure 1. Use with 'TimeBinningCode.R'
DOI: 10.5061/dryad.tk82cd1/5
title: R code for time binning and Figure 1

description: This code allows for binning of the raw data as in the analysis to some substage levels, then allows reading in of the original pre-calculated extinction rates for the Phanerozoic, and allows a basic version of Figure 1 to be plotted. To perform the exact analyses, the reader is directed to the URL home of the R package divDyn.
DOI: 10.5281/zenodo.1412764
title: Ultralow-Power Chip-Based Soliton Microcombs For Photonic Integration

description: Available data for "Ultralow-power chip-based soliton microcombs for photonic integration" - author Junqiu Liu
DOI: 10.14272/nhlobhnrbwknio-uhfffaoysa-n
title: ethyl 4-acetamidobenzoate
title: InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13)

description: This dataset contains experimental data from a sample (ethyl 4-acetamidobenzoate, InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13)).
      The datasets from the following experiments are included:
      
      1H NMR
      
      13C NMR
      
      IR
      
      Mass
DOI: 10.14272/nhlobhnrbwknio-uhfffaoysa-n/13cnmr
title: 13C NMR (ethyl 4-acetamidobenzoate, InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13))

description: dataset for 13C NMR
DOI: 10.14272/vizcggjgpnrjfw-uhfffaoysa-n
title: 2,2,2-trichloro-N-(4-iodophenyl)acetamide
title: InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14)

description: This dataset contains experimental data from a sample (2,2,2-trichloro-N-(4-iodophenyl)acetamide, InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14)).
      The datasets from the following experiments are included:
      
      IR
      
      Mass
      
      1H NMR
      
      13C NMR
DOI: 10.14272/vizcggjgpnrjfw-uhfffaoysa-n/13cnmr
title: 13C NMR (2,2,2-trichloro-N-(4-iodophenyl)acetamide, InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14))

description: dataset for 13C NMR
DOI: 10.14272/vizcggjgpnrjfw-uhfffaoysa-n/1hnmr
title: 1H NMR (2,2,2-trichloro-N-(4-iodophenyl)acetamide, InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14))

description: dataset for 1H NMR
DOI: 10.14272/vizcggjgpnrjfw-uhfffaoysa-n/ir
title: IR (2,2,2-trichloro-N-(4-iodophenyl)acetamide, InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14))

description: dataset for IR
DOI: 10.14272/vizcggjgpnrjfw-uhfffaoysa-n/mass
title: Mass (2,2,2-trichloro-N-(4-iodophenyl)acetamide, InChI=1S/C8H5Cl3INO/c9-8(10,11)7(14)13-6-3-1-5(12)2-4-6/h1-4H,(H,13,14))

description: dataset for Mass
DOI: 10.17632/9hwxt7pmzr.2
title: Algunos apuntes sobre la existencia o ausencia de la norma hispanoamericana

description: En este artículo se trata de la especificidad del español en España y diferentes países latinoamericanos, se analizan sus rasgos característicos, se plantea la tarea de la posibilidad de elaborar la única norma hispanoamericana.
DOI: 10.5281/zenodo.1412765
title: Ultralow-Power Chip-Based Soliton Microcombs For Photonic Integration

description: Available data for "Ultralow-power chip-based soliton microcombs for photonic integration" - author Junqiu Liu
DOI: 10.5281/zenodo.1412777
title: Currier_And_Lundquist_2018_Data_Final

description: All other data that was not publicly available in Currier and Lundquist 2018 but used within, including ASO Tuolumne data, WRF wind data, Dana Meadows air temperature/relative humidity data, and snow climate data were uploaded to the Currier_and_Lundquist_2018_Data repository
DOI: 10.5281/zenodo.1412778
title: Currier_And_Lundquist_2018_Data_Final

description: All other data that was not publicly available in Currier and Lundquist 2018 but used within, including ASO Tuolumne data, WRF wind data, Dana Meadows air temperature/relative humidity data, and snow climate data were uploaded to the Currier_and_Lundquist_2018_Data repository
DOI: 10.14272/nhlobhnrbwknio-uhfffaoysa-n/1hnmr
title: 1H NMR (ethyl 4-acetamidobenzoate, InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13))

description: dataset for 1H NMR
DOI: 10.14272/nhlobhnrbwknio-uhfffaoysa-n/ir
title: IR (ethyl 4-acetamidobenzoate, InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13))

description: dataset for IR
DOI: 10.14272/nhlobhnrbwknio-uhfffaoysa-n/mass
title: Mass (ethyl 4-acetamidobenzoate, InChI=1S/C11H13NO3/c1-3-15-11(14)9-4-6-10(7-5-9)12-8(2)13/h4-7H,3H2,1-2H3,(H,12,13))

description: dataset for Mass
DOI: 10.17632/d95fvpfp3c.1
title: Data Structure

description: Innovation and macroeconomic data
DOI: 10.17632/ks9fmy2yrr.3
title: Cloning, characterization, antibacterial activity and expression of hamp in pond loach (Misgurnus anguillicaudatus) after bacterial challenge with Aeromonas hydrophila

description: Supplementary figure and table
DOI: 10.17632/zx3nwcmd8h.1
title: Processing and microstructural characterization of metallic powders produced from chips of AA2024 alloy

description: Data is related to the research on processing and microstructural characterization of metallic powders produced from chips of AA2024 alloy. DSC data show results of DSC studies of AA2024 alloy. XRD data shows diffractograms for four milling regimes and initial chips. SLS method helped to estimate powder size for the milled powders and to get statistically valued results.
DOI: 10.5255/ukda-sn-7187-1
title: Badger-Bovine Tuberculosis Controversy: Expertise and Experience in Animal Disease Research, 2008-2011
DOI: 10.17632/b2cd3j85rc.2
title: Cloning, characterization, antibacterial activity and expression of hamp in pond loach (Misgurnus anguillicaudatus) after bacterial challenge with Aeromonas hydrophila

description: Supplementary Fig. 1 The detailed primer reports of hamp 1a and 1b which were used to determine the expression pattern in qRT-PCR Supplementary Fig. 2 Phylogenic tree of hepcidin amino acid sequences constructed using the neighbor-joining method. Supplementary Fig. 3 The plot shows the posterior probabilities of inside/outside/transmembrane helices. Supplementary Fig. 4 (A) Three-dimensional structures of M. anguillicaudatus Hepcidin protein obtained using SWISS-MODEL Supplementary Table 1. GenBank accession numbers for hepcidin homologs Supplementary Table 2. Assessment of predicted three-dimensional structure of hepcidin protein by different validation methods. Supplementary Table 3. Predicted protein interactions for the M. anguillicaudatus hepcidin 1 inferred using STRING algorithm Supplementary Table 4. Basal mRNA expression of the two paralogs in different tissues relative to β-actin Supplementary Table 5. mRNA expression of the two paralogs in different tissues after the challenge with A. hydrophila
DOI: 10.17632/b2cd3j85rc.3
title: Cloning, characterization, antibacterial activity and expression of hamp in pond loach (Misgurnus anguillicaudatus) after bacterial challenge with Aeromonas hydrophila

description: Supplementary Fig. 1 The detailed primer reports of hamp 1a and 1b which were used to determine the expression pattern in qRT-PCR Supplementary Fig. 2 Phylogenic tree of hepcidin amino acid sequences constructed using the neighbor-joining method. Supplementary Fig. 3 The plot shows the posterior probabilities of inside/outside/transmembrane helices. Supplementary Fig. 4 (A) Three-dimensional structures of M. anguillicaudatus Hepcidin protein obtained using SWISS-MODEL Supplementary Table 1. GenBank accession numbers for hepcidin homologs Supplementary Table 2. Assessment of predicted three-dimensional structure of hepcidin protein by different validation methods. Supplementary Table 3. Predicted protein interactions for the M. anguillicaudatus hepcidin 1 inferred using STRING algorithm Supplementary Table 4. Basal mRNA expression of the two paralogs in different tissues relative to β-actin Supplementary Table 5. mRNA expression of the two paralogs in different tissues after the challenge with A. hydrophila
DOI: 10.17632/ks9fmy2yrr.4
title: Cloning, characterization, antibacterial activity and expression of hamp in pond loach (Misgurnus anguillicaudatus) after bacterial challenge with Aeromonas hydrophila

description: Supplementary figure and table
DOI: 10.5281/zenodo.1412779
title: Comparison of Software Engineering Experiment Quality Evaluation Approaches - Experimental Package

description: Experimental Package of the Comparison of Experiment Quality Evaluation Approaches
DOI: 10.5281/zenodo.1412780
title: Comparison Of Software Engineering Experiment Quality Evaluation Approaches - Experimental Package

description: Experimental Package of the Comparison of Experiment Quality Evaluation Approaches
DOI: 10.5281/zenodo.1412786
title: Experiment Quality Evaluation Guidelines - Qualitative Study

description: Experiment Quality Evaluation Guidelines - Qualitative Study
DOI: 10.5281/zenodo.1412787
title: Experiment Quality Evaluation Guidelines - Qualitative Study

description: Experiment Quality Evaluation Guidelines - Qualitative Study
DOI: 10.5281/zenodo.1412793
title: A Systematic Mapping Study On Software Product Line Experiments

description: A Systematic Mapping Study on Software Product Line Experiments
DOI: 10.5523/bris.1fdbdk006dcth2n9ky8vlfwj7l
title: Data for publication: Nudging axially compressed cylindrical panels towards imperfection insensitivity

description: This repository contains the data used to produce the figures in the publication: Nudging axially compressed cylindrical panels towards imperfection insensitivity
DOI: 10.5255/ukda-sn-7187-2
title: Badger-Bovine Tuberculosis Controversy: Expertise and Experience in Animal Disease Research, 2008-2011
DOI: 10.5281/zenodo.1411407
title: Reformatted Data Analyzed In Alamil Et Al. (2018)

description: Reformatted data analyzed in Alamil et al. (2018; Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases). The datasets that are provided concern swine influenza virus (reformatted from Murcia et al., 2012), Ebola virus (reformatted from Gire et al., 2014) and wild salsify potyvirus. Two rds files are provided for swine influenza, the first one for the naive chain, the second one for the vaccinated chain. Ebola rds files are compressed into the archive ebolaRDS.zip. rds files can be loaded in the R statistical software with the command "readRDS(filename)", which returns a list. The list contains a "readme" item describing the contents of the list, as well as a "host.table" item providing metadata about host units and a "set.of.sequences" item providing sequencing data formatted in numeric matrices.

R codes are also provided to run analyses proposed by Alamil et al. (2018), namely functions.R that contains R functions required for computations, and influenza.R, ebola.R and potyvirus.R where the analyses are implemented for each case study.

Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.

Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369–1372
description: {"references": ["Alamil M, Hughes J., Berthier K, Desbiez C, Th\u00e9baud G Soubeyrand S (2018) Inferring epidemiological links from deep sequencing data: a statistical learning approach for human, animal and plant diseases. Technical Report, BioSP, INRA, Avignon.", "Murcia PR, Hughes J, Battista P, Lloyd L, Baillie GJ, Ramirez-Gonzalez RH, et al. Evolution of an Eurasian avian-like influenza virus in naive and vaccinated pigs. PLoS Pathogens. 2012;8(5):e1002730.", "Gire SK, Goba A, Andersen KG, Sealfon RS, Park DJ, Kanneh L, et al. Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak. Science. 2014;345:1369\u20131372"]}
DOI: 10.17632/s2599g6m9j.2
title: Raw and processed data_cellulose acetate_gallic acid

description: These data are the raw and processed data for the manuscript entitled "Gallic Acid-Loaded Electrospun Cellulose Acetate Nanofibers as Potential Wound Dressing Materials".
DOI: 10.17632/xhgdsgvpw7.1
title: Processed data_Processing and microstructural characterization of metallic powders produced from chips of AA2024 alloy

description: Processed data for AA2024 powder alloy.
DOI: 10.5281/zenodo.1410917
title: Rapid T1 quantification from high resolution 3D data with model-based reconstruction

description: In-vivo datasets used in the work "Rapid T1 quantification from high resolution 3D data with model-based reconstruction" with DOI: 10.1002/mrm.27502<br>
DOI: 10.17632/25kvr7zbzk.1
title: Dynamic acetylation of phosphoenolpyruvate carboxykinase toggles enzyme activity between gluconeogenic and anaplerotic reactions (Latorre et al.)

description: Cytosolic phosphoenolpyruvate carboxykinase (PCK1) is considered a gluconeogenic enzyme; however, its metabolic functions and regulatory mechanisms beyond gluconeogenesis are poorly understood. Here, we describe that dynamic acetylation of PCK1 interconverts the enzyme between gluconeogenic and anaplerotic activities. Under high glucose, p300-dependent hyperacetylation of PCK1 did not lead to protein degradation but instead increased the ability of PCK1 to perform the anaplerotic reaction, converting phosphoenolpyruvate to oxaloacetate. Lys91 acetylation destabilizes the active site of PCK1 and favors the reverse reaction. At low energy input, we demonstrate that SIRT1 deacetylates PCK1 and fully restores the gluconeogenic ability of PCK1. Additionally, we found that GSK3β-mediated phosphorylation of PCK1 decreases acetylation and increases ubiquitination. Biochemical evidence suggests that serine phosphorylation adjacent to Lys91 stimulates SIRT1-dependent deacetylation of PCK1. This work reveals an unexpected capacity of hyperacetylated PCK1 to promote anaplerotic activity, and the intersection of post-translational control of PCK1 involving acetylation, phosphorylation, and ubiquitination. Raw image data related to "Dynamic acetylation of phosphoenolpyruvate carboxykinase toggles enzyme activity between gluconeogenic and anaplerotic reactions". Full paper can be found at: https://www.cell.com/molecular-cell/fulltext/S1097-2765(18)30600-2
DOI: 10.17632/9xyp88y6n5.1
title: Exaptation as a mechanism for functional reinforcement of an animal pheromone system.

description: We investigated the evolutionary trajectory of a series of 15 kDa proteins – termed persuasins – that were co-opted more recently alongside the ancient sodefrin precursor-like factor (SPF) courtship pheromone system in salamanders. Expression, genomic and molecular phylogenetic analyses show that persuasins originated from a gene that is expressed as a multi-domain protein in internal organs where it has no pheromone function, but underwent gene duplication and neofunctionalisation. The subsequent evolution combined domain-loss and the introduction of a proteolytic cleavage site in the duplicated gene to give rise to two-domain cysteine rich proteins with structural properties similar to SPF pheromones In the absence of an NCBI database for sequences assembled by third party analyses (assembly of publicly available reads, RNA sequencing), we deposited nucleotide and amino acid sequences of persuasin and DUF-persuasin transcripts assembled from publicly available short reads (NCBI: SRA) on the Mendeley Data repository. Sources of publicly available SRA datasets are cited in the main article and supplemental information (Maex et al. (2018) Exaptation as a mechanism for functional reinforcement of an animal pheromone system).
DOI: 10.18112/openneuro.ds001510.v1.0.1
title: Schematic narrative perception and recall (intact)
DOI: 10.18112/openneuro.ds001510.v1.0.2
title: Schematic narrative perception and recall (intact)
DOI: 10.5281/zenodo.1410918
title: Rapid T1 quantification from high resolution 3D data with model-based reconstruction

description: In-vivo datasets used in the work "Rapid T1 quantification from high resolution 3D data with model-based reconstruction" with DOI: 10.1002/mrm.27502<br>
DOI: 10.5281/zenodo.1413488
title: Data For Matlab Package Locfish To Simulate Realistic 3D Smfish Images

description: Different data-sets needed by the Matlab package locFISH.  locFISH allows the simulation and analysis of realistic single molecule FISH (smFISH) images.

<strong>data_simulation.zip</strong><br>
Contains all necessary data to simulated smFISH images. Specifically, the zip archive contains a library of 3D cell shapes, realistic imaging background, and a simulated PSF (Point Spread Function). 

<strong>GAPDH.zip</strong><br>
Contains the smFISH data of GAPDH and the corresponding analysis results, which were used to create the library of cell shapes provided in data_simulation.zip 

For more details on these data and how do to use them, please consult the detailed user-manual provided with <strong>locFISH</strong>, available at

https://bitbucket.org/muellerflorian/fish_quant
DOI: 10.5281/zenodo.1413489
title: Data For Matlab Package Locfish To Simulate Realistic 3D Smfish Images

description: Different data-sets needed by the Matlab package locFISH.  locFISH allows the simulation and analysis of realistic single molecule FISH (smFISH) images.

<strong>data_simulation.zip</strong><br>
Contains all necessary data to simulated smFISH images. Specifically, the zip archive contains a library of 3D cell shapes, realistic imaging background, and a simulated PSF (Point Spread Function). 

<strong>GAPDH.zip</strong><br>
Contains the smFISH data of GAPDH and the corresponding analysis results, which were used to create the library of cell shapes provided in data_simulation.zip 

For more details on these data and how do to use them, please consult the detailed user-manual provided with <strong>locFISH</strong>, available at

https://bitbucket.org/muellerflorian/fish_quant
DOI: 10.5523/bris.3727bnp7sjixs2c38mt4det6kl
title: Mineralocorticoid receptors tethered to glucocorticoid receptors
title: MRs tethered to GRs

description: Supplemental information supporting publication of article entitled "Mineralocorticoid receptors tethered to glucocorticoid receptors".
DOI: 10.5255/ukda-sn-7187-5
title: Badger-Bovine Tuberculosis Controversy: Expertise and Experience in Animal Disease Research, 2008-2011
DOI: 10.7487/2018.254.1.1141
title: Tara Marshall

description: zooplankton data, as annual means and phenology index, for three areas around UK.
DOI: 10.13016/m2599z52h
title: EEG-MEG

description: Data collected from normal hearing younger adults (18-30) and from normal hearing and hearing impaired older adults (&gt;= 60) to study age-related deficits in the representation of speech in noise. EEG data were collected with Biosemi system by using the ABR module from one electrode placed in Cz and reference with respect to the left and right ear lobes. The data uploaded are the raw ones in bdf format. BDF files can be opened by using matlab scripts that can be found in toolboxes such as EEGLab or that can be found directly from Biosemi's website. Each mat file contains information about sampling frequency, channels, triggers, etc. Each participants was tested in 9 conditions: Quiet, +3 dB, 0 dB, -3 dB and -6 dB with English (H) and Dutch (L) speakers used as background noise. Files were named based on the SNR and background speaker used. For instance, S01_M3_H, means Subject 01, SNR = -3 dB and English speaker in the background, while S01_P3_L, means Subject 01, SNR = +3 dB and Dutch speaker in the background. The "Q" denomination is used for the condition in quiet. Subjects id# from 1 to 17 are younger adults, subjects with id# from 21 to 35 are normal hearing older adults and subjects named S01_HL.....S17_HL are older adults with hearing loss.
 
MEG data were collected from 157 sensors. Each mat file contains information about the data, such as sampling frequency. A 3D matrix is used to store the 3 repetitions recorded from each conditions. Each participants was tested in 10 conditions: Quiet, +3 dB, 0 dB, -3 dB and -6 dB with English (H) and Dutch (L) speakers used as background noise. Two conditions in quiet were played. Files were named based on the SNR and background speaker used, in the same way as for the EEG data. 

Auditory stimuli were also uploaded. The stimuli have been pre-processed as described in our publications "Evidence of degraded representation of speech in noise, in the aging midbrain and cortex" and "Effect of informational content of noise on speech representation in the aging midbrain and cortex". The envelope needs to be extracted.
DOI: 10.18112/openneuro.ds001511.v1.0.1
title: Schematic narrative perception and recall (scrambled)
DOI: 10.5281/zenodo.1413358
title: Identification and Functional Characterization of an Alternative Cancer-derived PD-L1 Isoform (supplemental data)

description: The enclosed files contain all of the supplemental data from: Identification and Functional Characterization of an Alternative Cancer-derived PD-L1 Isoform. The files include the complete tables in CSV-formatted files.