cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7602286
title: Dataset for the simulated response of vegetation composition and carbon dynamics to variations in drought-heat occurrence

description: Dataset consisting of model runs from six dynamic global vegetation models each using six different scenarios with varying drought-heat signatures as input. Each zip file contains all the scenario runs for one model.
DOI: 10.6084/m9.figshare.21975671
title: Supplementary Material for: Normal splanchnic blood flow in patient with severe stenosis of the celiac artery and superior mesenteric artery

description: The diagnosis of chronic mesenteric ischaemia is typically based on angiographic findings along with a classic symptomatology. Only a few methods are available for functional testing to establish the diagnosis, such as indirect measurement of the splanchnic blood flow and hepatic vein oxygenation. The present case is a 76-year old woman with weight loss and intermittent abdominal pain, who was clinically suspected of chronic mesenteric ischaemia based on severe stenosis of the celiac artery and superior mesenteric artery. Measurement of the total splanchnic blood flow and hepatic vein oxygenation, however, showed a normal perfusion after meal stimulation, as well as an increased hepatic vein oxygenation indicating normal flow reserves. This was likely due to a richly developed Riolan's anastomosis arising from the inferior mesenteric artery. The present case advocates the need for functional testing when diagnosing chronic mesenteric ischaemia.
DOI: 10.6084/m9.figshare.21975671.v1
title: Supplementary Material for: Normal splanchnic blood flow in patient with severe stenosis of the celiac artery and superior mesenteric artery

description: The diagnosis of chronic mesenteric ischaemia is typically based on angiographic findings along with a classic symptomatology. Only a few methods are available for functional testing to establish the diagnosis, such as indirect measurement of the splanchnic blood flow and hepatic vein oxygenation. The present case is a 76-year old woman with weight loss and intermittent abdominal pain, who was clinically suspected of chronic mesenteric ischaemia based on severe stenosis of the celiac artery and superior mesenteric artery. Measurement of the total splanchnic blood flow and hepatic vein oxygenation, however, showed a normal perfusion after meal stimulation, as well as an increased hepatic vein oxygenation indicating normal flow reserves. This was likely due to a richly developed Riolan's anastomosis arising from the inferior mesenteric artery. The present case advocates the need for functional testing when diagnosing chronic mesenteric ischaemia.
DOI: 10.6084/m9.figshare.21976184.v1
title: Supplementary Material for: Bilateral Acute Iris Transillumination Syndrome (BAIT) after topical moxifloxacin/dexamethasone initially misdiagnosed as uveitis: case report

description: Bilateral acute iris transillumination (BAIT) syndrome is a rare condition of unknown cause, characterised by acute onset of pigment dispersion in the anterior chamber, depigmentation of the iris, and heavy pigment deposition in the anterior chamber angle, with bilateral involvement in most cases. We present a case of a 46-year-old healthy woman, who developed BAIT in both eyes, following the use of topical moxifloxacin/dexamethasone for bilateral bacterial conjunctivitis, leading to a nonarteritic anterior ischemic optic neuropathy in the left eye.
DOI: 10.5281/zenodo.7594704
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 18 months scRNAseq fastq files (mouse 2) for Figures 5 and 6

description: This dataset contains .fastq files for the 18 month timepoint (mouse 2) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7594703
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 18 months scRNAseq fastq files (mouse 2) for Figures 5 and 6

description: This dataset contains .fastq files for the 18 month timepoint (mouse 2) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7594646
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 12 months scRNAseq fastq files (mouse 2) for Figures 5 and 6

description: This dataset contains .fastq files for the 12 month timepoint (mouse 2) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7594645
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 12 months scRNAseq fastq files (mouse 2) for Figures 5 and 6

description: This dataset contains .fastq files for the 12 month timepoint (mouse 2) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7603125
title: Model A

description: Model A data
DOI: 10.5281/zenodo.7594041
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 12 months scRNAseq fastq files (mouse 1) for Figures 5 and 6

description: This dataset contains .fastq files for the 12 month timepoint (mouse 1) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7593956
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 12 months scRNAseq fastq files (mouse 1) for Figures 5 and 6

description: This dataset contains .fastq files for the 12 month timepoint (mouse 1) scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7602002
title: Vessel dimorphism and wood traits in lianas and trees among three contrasting environments

description: There are data and R-codes for "Vessel dimorphism and wood traits in lianas and trees among three contrasting environments" which will be published.
DOI: 10.5281/zenodo.7602001
title: Vessel dimorphism and wood traits in lianas and trees among three contrasting environments

description: There are data and R-codes for "Vessel dimorphism and wood traits in lianas and trees among three contrasting environments" which will be published.
DOI: 10.5281/zenodo.7591578
title: Urbanus and Cosgrove Nature Communications (2023) - scRNAseq fastq files GFP negative sample in Figure 2

description: This dataset contains .fastq files for the GFP negative sample in the scRNAseq dataset used in Figures 2. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7591577
title: Urbanus and Cosgrove Nature Communications (2023) - scRNAseq fastq files GFP negative sample in Figure 2

description: This dataset contains .fastq files for the GFP negative sample in the scRNAseq dataset used in Figures 2. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.6084/m9.figshare.21975737.v1
title: Supplementary Material for: COVID-19 Associated Cerebrovascular Events: A Case Series and Review of Possible Mechanisms

description: Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) affects multiple body systems, including the nervous system. Cerebrovascular accidents can also occur. Patients with comorbid illnesses have severe manifestations and poor outcomes. Despite the proper mechanism of SARS-CoV-2 infection-associated stroke having not yet been settled, various possible mechanisms have been hypothesized. One possibility is that the virus causes endothelial dysfunction and immune-mediated injury. Another possibility is that the trans-neuronal spread of the virus affects brain tissue. In addition, hypercoagulability caused by SARS-CoV-2 infection could lead to a stroke. A virus-induced dysfunction of the renin-angiotensin system could also lead to a stroke. The immune response and vasculitis resulting from SARS-CoV-2 infection are also possible causes via a cytokine storm, immune dysfunction, and various inflammatory responses. SARS-CoV-2 infection may affect calcitonin gene-related peptides and cerebral blood flow and may lead to stroke. Finally, SARS-CoV-2 may cause hemorrhagic strokes via mechanisms stimulated by its interaction with angiotensin-converting enzyme 2 (ACE2), leading to arterial wall damage and blood pressure changes. In this article, we will present seven cases of stroke-associated SARS-CoV-2 infection.
DOI: 10.5281/zenodo.7603170
title: Model B

description: Model B data
DOI: 10.5281/zenodo.7603169
title: Model B

description: Model B data
DOI: 10.5517/ccdc.csd.cc26fzh4
title: CCDC 2039226: Experimental Crystal Structure Determination

description: Related Article: Lihong Jia, Mingxia Guo, Jiayu Dai, Wei Chen, Ling Zhou, Qiuxiang Yin|2023|Cryst.Growth Des.|23|832|doi:10.1021/acs.cgd.2c01071
description: Related Article: Lihong Jia|2021|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26fzwj
title: CCDC 2039238: Experimental Crystal Structure Determination

description: Related Article: Lihong Jia, Mingxia Guo, Jiayu Dai, Wei Chen, Ling Zhou, Qiuxiang Yin|2023|Cryst.Growth Des.|23|832|doi:10.1021/acs.cgd.2c01071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc26p446
title: CCDC 2046097: Experimental Crystal Structure Determination

description: Related Article: Lihong Jia, Mingxia Guo, Jiayu Dai, Wei Chen, Ling Zhou, Qiuxiang Yin|2023|Cryst.Growth Des.|23|832|doi:10.1021/acs.cgd.2c01071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7591550
title: Urbanus and Cosgrove Nature Communications (2023) - scRNAseq fastq files GFP positive sample in Figure 2

description: This dataset contains .fastq files for the GFP negative sample in the scRNAseq dataset used in Figures 2. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.5517/ccdc.csd.cc2933m5
title: CCDC 2118156: Experimental Crystal Structure Determination

description: Related Article: Lihong Jia, Mingxia Guo, Jiayu Dai, Wei Chen, Ling Zhou, Qiuxiang Yin|2023|Cryst.Growth Des.|23|832|doi:10.1021/acs.cgd.2c01071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7591549
title: Urbanus and Cosgrove Nature Communications (2023) - scRNAseq fastq files GFP positive sample in Figure 2

description: This dataset contains .fastq files for the GFP negative sample in the scRNAseq dataset used in Figures 2. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove et al Nature Communications (2023)"]}
DOI: 10.5517/ccdc.csd.cc299zqb
title: CCDC 2124762: Experimental Crystal Structure Determination

description: Related Article: Lihong Jia, Mingxia Guo, Jiayu Dai, Wei Chen, Ling Zhou, Qiuxiang Yin|2023|Cryst.Growth Des.|23|832|doi:10.1021/acs.cgd.2c01071
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7590191
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 18 months scRNAseq fastq files (mouse 1) for Figures 5 and 6

description: This dataset contains .fastq files for the 18 month timepoint mouse 1 sample in the scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7590190
title: Urbanus and Cosgrove et al. Nature Communications (2023) - 18 months scRNAseq fastq files (mouse 1) for Figures 5 and 6

description: This dataset contains .fastq files for the 18 month timepoint mouse 1 sample in the scRNAseq dataset used in Figures 5 and 6. For any questions about this dataset please contact Leila Perie (leile.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7603183
title: Model A

description: Model A data
DOI: 10.5281/zenodo.7603124
title: Model A

description: Model A data
DOI: 10.5281/zenodo.7590818
title: Urbanus and Cosgrove et al. Nature Communications (2023) - CellRanger outputs for scRNAseq experiments in Figures 2,5, and 6

description: Attached are the outputs of the cell ranger pipeline for 10x 3' scRNAseq of HSPCs. For any questions regarding this dataset please contact Leila Perie (leila.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications (2023)"]}
DOI: 10.5281/zenodo.7590817
title: Urbanus and Cosgrove et al. Nature Communications (2023) - CellRanger outputs for scRNAseq experiments in Figures 2,5, and 6

description: Attached are the outputs of the cell ranger pipeline for 10x 3' scRNAseq of HSPCs. For any questions regarding this dataset please contact Leila Perie (leila.perie@curie.fr)
description: {"references": ["Urbanus and Cosgrove. DRAG in situ barcoding reveals an increased number of HSPCs contributing to myelopoiesis with age. Nature Communications (2023)"]}
DOI: 10.48567/w0vf-9176
title: Alexander Tall Tower Automatic Weather Station, 2012 quality-controlled observational data.
DOI: 10.48567/pecf-0h85
title: Alexander Tall Tower Automatic Weather Station, 2013 quality-controlled observational data.
DOI: 10.48567/qres-sc88
title: Alexander Tall Tower Automatic Weather Station, 2014 quality-controlled observational data.
DOI: 10.6069/0kk2-6173
title: Targeted Proteomics Using Stable Isotope Labeled Protein Fragments Enables Precise and Robust Determination of Total Apolipoprotein(a) in Human Plasma

description: Lipoprotein(a), also known as Lp(a), is an LDL-like particle composed of apolipoprotein(a) (apo(a)) bound covalently to apolipoprotein B100. Plasma concentrations of Lp(a) are highly heritable and vary widely between individuals. Elevated plasma concentration of Lp(a) is considered as an independent, causal risk factor of cardiovascular disease (CVD). Targeted mass spectrometry (LC-SRM/MS) combined with stable isotope-labeled recombinant proteins provides robust and precise quantification of proteins in the blood, making LC-SRM/MS assays appealing for monitoring plasma proteins for clinical implications. This study presents a novel quantitative approach, based on prototypic peptides, to determine the absolute concentration of apo(a) from two microliters of plasma and qualified according to guideline requirements for targeted proteomics assays. After optimization, assay parameters such as linearity, lower limits of quantification (LLOQ), intra-assay variability (CV: 4.72%) and inter-assay repeatability (CV: 7.76%) were determined and the LC-SRM/MS results were benchmarked against a commercially available immunoassay. In summary, the measurements of an apo(a) single copy specific peptide and a K4 specific peptide allows for the determination of molar concentration and relative size of apo(a) in individuals.
DOI: 10.6084/m9.figshare.21976178.v1
title: Supplementary Material for: Medulloblastoma development in a patient with a constitutional balanced t(5;22)(q35.1;q11.2) involving the NF2 gene.

description: Neurofibromatosis type 2 (NF2) is a brain tumor predisposing syndrome caused by inactivating alterations of the NF2 gene mapped at chromosome 22q. Currently, no genetic information exists on medulloblastomas occurring in NF2 patients. We herein report on the genetic alterations observed in a girl in which the NF2 gene was de novo altered due to a constitutional translocation: t(5;22)(q35.1;q11.2). This girl had a particularly aggressive disease course. At the age of 4 she had already been diagnosed with, three lesions classified as schwannomas, and a meningioma. At 10-years-old she developed a medulloblastoma. She died at the age of 14 due to a refractory acute myeloid leukemia (AML). From the genetic point of view, we observed that: 1) the NF2 gene was rearranged in all patient samples: blood, tumor, and leukemic cells; 2) loss of 3’ region of NF2 and the downstream regions of chromosome 22 were only detected in medulloblastoma cells; 3) the known cancer AML related gene: NPM1 which is mapped at 5q35.1 was not the target of any alteration in our patient. Our data suggests that inactivation of the NF2 gene was relevant for the medulloblastoma pathogenesis. Furthermore, we know that malignant cancers are the result of a multi-epi-genetic sequence of events, and although, unquestionably limited to the genetic findings in one case. We may hypothesize, that as described for a fraction of medulloblastomas, the alteration of a gene mapped at 5q might also have been relevant for medulloblastoma development in our patient.
DOI: 10.48567/7njg-b578
title: Duplicate
DOI: 10.5281/zenodo.7589417
title: Analyzing the Impact of Elusive Faults on Blockchain Reliability – Supplemental Material

description: Supplemental Material for the paper - Analyzing the Impact of Elusive Faults on Blockchain Reliability
DOI: 10.5519/qd.gammbq02
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.22006313
title: HCAb

description: Raw dataf for manuscript with the title of " Avidity engineering of human heavy-chain-only antibodies mitigates neutralization resistance of SARS-CoV-2 variants<strong> </strong>".
DOI: 10.6084/m9.figshare.22006313.v1
title: HCAb

description: Raw dataf for manuscript with the title of " Avidity engineering of human heavy-chain-only antibodies mitigates neutralization resistance of SARS-CoV-2 variants<strong> </strong>".
DOI: 10.5281/zenodo.6871997
title: Data for: Mobile impurities interacting with a few one-dimensional lattice bosons

description: Dataset for <em>Mobile impurities interacting with a few one-dimensional lattice bosons</em> (10.1088/1361-6455/acb51b). It corresponds to exact diagonalization results for energies and bipolaron sizes. The files correspond to the following figures in the preprint: Fig. 1a: Ep_UBB2.dat <br> Fig. 1b: Ep_UBB4.dat <br> Fig. 1c: Ep_UBB6.dat <br> Fig. 1d: Ep_UBB8.dat <br> Fig. 2: Ep_UBI50.dat<br> Fig. 5a: Ebp_UBB2.dat <br> Fig. 5b: Ebp_UBB4.dat <br> Fig. 5c: Ebp_UBB6.dat <br> Fig. 5d: Ebp_UBB8.dat <br> Fig. 6: Ebp_UBI50.dat <br> Fig. 7a: rbp_UBB2.dat <br> Fig. 7b: rbp_UBB4.dat <br> Fig. 7c: rbp_UBB6.dat <br> Fig. 7d: rbp_UBB8.dat <br> Fig. 8: rbp_UBI50.dat
DOI: 10.5281/zenodo.6871996
title: Data for: Mobile impurities interacting with a few one-dimensional lattice bosons

description: Dataset for <em>Mobile impurities interacting with a few one-dimensional lattice bosons</em> (10.1088/1361-6455/acb51b). It corresponds to exact diagonalization results for energies and bipolaron sizes. The files correspond to the following figures in the preprint: Fig. 1a: Ep_UBB2.dat <br> Fig. 1b: Ep_UBB4.dat <br> Fig. 1c: Ep_UBB6.dat <br> Fig. 1d: Ep_UBB8.dat <br> Fig. 2: Ep_UBI50.dat<br> Fig. 5a: Ebp_UBB2.dat <br> Fig. 5b: Ebp_UBB4.dat <br> Fig. 5c: Ebp_UBB6.dat <br> Fig. 5d: Ebp_UBB8.dat <br> Fig. 6: Ebp_UBI50.dat <br> Fig. 7a: rbp_UBB2.dat <br> Fig. 7b: rbp_UBB4.dat <br> Fig. 7c: rbp_UBB6.dat <br> Fig. 7d: rbp_UBB8.dat <br> Fig. 8: rbp_UBI50.dat
DOI: 10.5281/zenodo.7603196
title: Common Workflow Scheduler Evaluation with Nextflow and Kubernetes

description: Setup scripts to test Nextflow with CWS on Kubernetes Traces and logs of 990 workflow executions
description: If you use this software, please cite it as below.
DOI: 10.5281/zenodo.7603195
title: Common Workflow Scheduler Evaluation with Nextflow and Kubernetes

description: Setup scripts to test Nextflow with CWS on Kubernetes Traces and logs of 990 workflow executions
description: If you use this software, please cite it as below.
DOI: 10.5281/zenodo.7603149
title: Radio-Source Tracker: Autonomous Attitude Determination on a Radio Interferometric Swarm: supplementary dataset

description: This repository contains the data files used to generate the figures presented in the following article:<br> Rouillé, E. et al. (2023) "Radio-Source Tracker: Autonomous Attitude Determination on a Radio Interferometric Swarm", submitted to Radio Science.<br> (Pre-print Arxiv, TBD) The data are the output of various runs of the simulation pipeline.<br> Simulations were run for various interferometer configurations, frequencies, noise levels and random draws.<br> This pipeline and its related package can be found online at the following address:<br> https://gitlab.obspm.fr/erouille/noire_simulation/
DOI: 10.5281/zenodo.7603148
title: Radio-Source Tracker: Autonomous Attitude Determination on a Radio Interferometric Swarm: supplementary dataset

description: This repository contains the data files used to generate the figures presented in the following article:<br> Rouillé, E. et al. (2023) "Radio-Source Tracker: Autonomous Attitude Determination on a Radio Interferometric Swarm", submitted to Radio Science.<br> (Pre-print Arxiv, TBD) The data are the output of various runs of the simulation pipeline.<br> Simulations were run for various interferometer configurations, frequencies, noise levels and random draws.<br> This pipeline and its related package can be found online at the following address:<br> https://gitlab.obspm.fr/erouille/noire_simulation/