cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3600228
title: Nanopore raw signal data to Benchmarking the MinION: Evaluating long reads for microbial profiling

description: This dataset contains original raw signal data of a blind study sequencing mock community samples. The samples are differing by nucleic acid quantification technique and composition, and consist of twelve prokaryotic species each. The raw signal data permits future basecalling and may assist in development of applications requiring signal level data. Sample 1 (Barcode 1): heterogenous, adjusted by ddPCR Sample 2 (Barcode 2): heterogenous, adjusted by Qubit Sample 3 (Barcode 3): equimolar, adjusted by ddPCR Sample 4 (Barcode 3): equimolar, adjusted by Qubit FLO-MIN106, SQK-LSK108; Flowcell FAH89600 Please consider citing our paper Leidenfrost, R.M., Pöther, D., Jäckel, U. <em>et al.</em> Benchmarking the MinION: Evaluating long reads for microbial profiling. <em>Sci Rep</em> <strong>10, </strong>5125 (2020). https://doi.org/10.1038/s41598-020-61989-x https://doi.org/10.1038/s41598-020-61989-x
DOI: 10.5281/zenodo.3600229
title: Nanopore raw signal data to Benchmarking the MinION: Evaluating long reads for microbial profiling

description: This dataset contains original raw signal data of a blind study sequencing mock community samples. The samples are differing by nucleic acid quantification technique and composition, and consist of twelve prokaryotic species each. The raw signal data permits future basecalling and may assist in development of applications requiring signal level data. Sample 1 (Barcode 1): heterogenous, adjusted by ddPCR Sample 2 (Barcode 2): heterogenous, adjusted by Qubit Sample 3 (Barcode 3): equimolar, adjusted by ddPCR Sample 4 (Barcode 3): equimolar, adjusted by Qubit FLO-MIN106, SQK-LSK108; Flowcell FAH89600 Please consider citing our paper Leidenfrost, R.M., Pöther, D., Jäckel, U. <em>et al.</em> Benchmarking the MinION: Evaluating long reads for microbial profiling. <em>Sci Rep</em> <strong>10, </strong>5125 (2020). https://doi.org/10.1038/s41598-020-61989-x https://doi.org/10.1038/s41598-020-61989-x
DOI: 10.6073/pasta/9959c6173e49278f951c45c5ef9ca2a8
title: Barre Woods Soil Warming Experiment at Harvard Forest since 2001

description: Two of the major results of our original soil warming study were that: (1) warming stimulated the decay of a labile soil carbon pool; and (2) it also increased the availability of inorganic nitrogen to plants. Because of the small size of the original warming plots an important question we have not been able to answer conclusively is: Has the increase in available nitrogen led to an increase in carbon storage in the vegetation? And if yes, how much? In a systems context an additional question is: What is the balance between the carbon lost from the soil and the carbon stored in the vegetation in response to soil warming? We are now addressing these important questions with a new warming experiment in the Barre Woods area of the Harvard Forest. The Barre Woods site was chosen because it is of similarities to the Prospect Hill site - stand age, tree species composition, and soil type. There is no evidence of a plow horizon at the Barre Woods site, though surrounding stone walls indicate past use as pastureland. Historical records indicate the site was destroyed during the 1938 hurricane and then regrew naturally. During the summer and fall of 2001 we buried 3.4 miles of heating cable in a 30 x 30m plot. Cables were buried at a 10cm depth, spaced 20cm apart. A second 30 x 30m area was delineated to serve as the control plot. Results from the original soil warming experiment confirmed that the soil disturbance associated with the installation of heating cables has had no effect on soil temperatures and only minor and variable impacts on soil moisture. In April 2002, we began a one-year period of baseline measurements before turning on the heat in the new megaplot. These measurements included nitrogen mineralization, trace gas fluxes (CO2, CH4, N2O), tree growth (dendrometer bands), an under story species survey, canopy foliage analysis (C:N, NIR), and lysimetry. Thermistors were installed in both plots to begin tracking soil temperatures. The baseline measurements have confirmed that there are no significant differences between the two plots for key ecosystem processes prior to the initiation of the warming manipulation. We will turn on the power in April 2003 to begin the "manipulation phase" of this study. From this study, we expect to determine whether or not warming results in the movement of nitrogen from the soil to the trees and to learn how this movement affects the net carbon balance of the ecosystem.
DOI: 10.17632/rctfsxgfps.2
title: Entrepreneurship and Innovation in Kentucky following the Tobacco Transition Payment Program: Dataset of individual, family, business, and community characteristics; 2013-2014.

description: The data were collected during 2013-2014, the last years of the Tobacco Transition Payment Program. The survey included a series of questions about history of innovation, business creation, current state of business activities, business risk taking, entrepreneurial intentions, and community, sociodemographic, family, and personality characteristics (total 229 questions). The survey was mailed to 12,000 household addresses in the state of Kentucky, covering 79 of Kentucky’s 120 counties—56 rural farming counties, 12 mining counties, and 11 urban counties, classified according to the US Department of Agriculture’s Rural-Urban Continuum Codes. For each occupation category of interest (self-employed, farming, neither self-employed nor farming) a random address list for the sample area was generated to be representative of the distribution of occupation by county. Completed surveys were returned by 1481 residents, a response rate of 12.3%; 661 of them reported to have experience with new venture creation. The respondents were highly diverse in terms of age, education, income, and personal and professional experience. A subset of respondents (N = 138) were farmers who participated in the Tobacco Transition Payment Program. The diversity of the respondents and breadth of survey questions allows examining complex relationships between individual, family, business, and community level factors affecting entrepreneurial intentions, actions, and success in rural and urban settings.
DOI: 10.25345/c53x3w
title: MassIVE MSV000084866 - Oficial Pool C. Lanceolatum interaction Lenard Positivo
title: Mass Spectra of the interaction between C.lanceolatum with endophytic fungi
DOI: 10.26050/wdcc/hope_kic_sonde
title: HD(CP)2 short term observation data of Radio sounding, HOPE campaign by KITcube

description: Project: High Definition Clouds and Precipitation for Climate Prediction-Observations - HD(CP)2 is a BMBF funded German-wide research initiative to improve our understanding of cloud and precipitation processes and their implication for climate prediction. The specific objectives for the HD(CP)2 observations team during the first and second phase of the project are as follows: Phase I Objective: To evaluate and develop encapsulations of relevant data, including statistical properties, over different spatio-temporal scales in order to enable the critical assessment of the HD(CP)2 simulations, as well as tools to enable model-data comparisons. Phase II Objective: To extend the methods of evaluation and encapsulation to a second, tropical, model domain, for which satellite remote sensing will be the primary data source. For more information see links: http://www.hdcp2.eu/Observations.2269.0.html , http://www.hdcp2.eu/ Summary: Radio soundings. Starting location at Hambach during the HOPE campaign.
DOI: 10.17632/4hm7n3b5d9.2
title: Improved Survival in Women versus Men with Merkel Cell Carcinoma

description: Studies have observed that women have better outcomes than men in melanoma, but less is known about the role of sex differences in outcomes for other aggressive cutaneous malignancies. We hypothesized that similar sex differences may be observed in Merkel cell carcinoma. In this study, including over 4,100 patients with Merkel cell carcinoma undergoing definitive surgical resection in the National Cancer Data Base between 2004 and 2014, we report that women had a consistent survival advantage in comparison to men after adjusting for other covariates in multivariate Cox regression and propensity score matched cohorts. Improved outcomes were observed in women across virtually all subgroups of patients. In this same study, we validated the initial results by using the SEER database. Importantly, we observed the improved survival in women was completely attributable to increased cancer-specific mortality, whereas there was no difference in other-cause mortality.
DOI: 10.17632/6wgj5fh4k9.1
title: T1-weighted MR images of children with multi-domain specific learning disorders and with good academic achievement
DOI: 10.25345/c5vd6p
title: MassIVE MSV000084869 - pos_acute_chagas_carnitine_ddms2
title: Positive polarity ddMS2 experiment of acute phase chagas diseases in mice treated with carnitine.
DOI: 10.5281/zenodo.3631346
title: Stonewall 50 Commemoration web archive collection derivatives

description: Web archive derivatives of the Stonewall 50 Commemoration collection from Columbia University Libraries. The derivatives were created with the Archives Unleashed Toolkit and Archives Unleashed Cloud. The <strong>cul-12143-parquet.tar.gz</strong> derivatives are in the Apache Parquet format, which is a columnar storage format. These derivatives are generally small enough to work with on your local machine, and can be easily converted to Pandas DataFrames. See this notebook for examples. <strong>Domains</strong> <pre><code class="language-java">.webpages().groupBy(ExtractDomainDF($"url").alias("url")).count().sort($"count".desc)</code></pre> Produces a DataFrame with the following columns: domain count <strong>Web Pages</strong> <pre><code class="language-java">.webpages().select($"crawl_date", $"url", $"mime_type_web_server", $"mime_type_tika", RemoveHTMLDF(RemoveHTTPHeaderDF(($"content"))).alias("content"))</code></pre> Produces a DataFrame with the following columns: crawl_date url mime_type_web_server mime_type_tika content <strong>Web Graph</strong> <pre><code class="language-java">.webgraph()</code></pre> Produces a DataFrame with the following columns: crawl_date src dest anchor <strong>Image Links</strong> <pre><code class="language-java">.imageLinks()</code></pre> Produces a DataFrame with the following columns: src image_url <strong>Binary Analysis</strong> Audio Images PDFs Presentation program files Spreadsheets Text files Word processor files<br> The <strong>cul-12143-auk.tar.gz </strong>derivatives<strong> </strong>are the standard set of web archive derivatives produced by the Archives Unleashed Cloud. <strong>Gephi </strong>file, which can be loaded into Gephi. It will have basic characteristics already computed and a basic layout. <strong>Raw Network</strong> file, which can also be loaded into Gephi. You will have to use that network program to lay it out yourself. <strong>Full text</strong> file. In it, each website within the web archive collection will have its full text presented on one line, along with information around when it was crawled, the name of the domain, and the full URL of the content. <strong>Domains count</strong> file. A text file containing the frequency count of domains captured within your web archive.
DOI: 10.5281/zenodo.3631347
title: Stonewall 50 Commemoration web archive collection derivatives

description: Web archive derivatives of the Stonewall 50 Commemoration collection from Columbia University Libraries. The derivatives were created with the Archives Unleashed Toolkit and Archives Unleashed Cloud. The <strong>cul-12143-parquet.tar.gz</strong> derivatives are in the Apache Parquet format, which is a columnar storage format. These derivatives are generally small enough to work with on your local machine, and can be easily converted to Pandas DataFrames. See this notebook for examples. <strong>Domains</strong> <pre><code class="language-java">.webpages().groupBy(ExtractDomainDF($"url").alias("url")).count().sort($"count".desc)</code></pre> Produces a DataFrame with the following columns: domain count <strong>Web Pages</strong> <pre><code class="language-java">.webpages().select($"crawl_date", $"url", $"mime_type_web_server", $"mime_type_tika", RemoveHTMLDF(RemoveHTTPHeaderDF(($"content"))).alias("content"))</code></pre> Produces a DataFrame with the following columns: crawl_date url mime_type_web_server mime_type_tika content <strong>Web Graph</strong> <pre><code class="language-java">.webgraph()</code></pre> Produces a DataFrame with the following columns: crawl_date src dest anchor <strong>Image Links</strong> <pre><code class="language-java">.imageLinks()</code></pre> Produces a DataFrame with the following columns: src image_url <strong>Binary Analysis</strong> Audio Images PDFs Presentation program files Spreadsheets Text files Word processor files<br> The <strong>cul-12143-auk.tar.gz </strong>derivatives<strong> </strong>are the standard set of web archive derivatives produced by the Archives Unleashed Cloud. <strong>Gephi </strong>file, which can be loaded into Gephi. It will have basic characteristics already computed and a basic layout. <strong>Raw Network</strong> file, which can also be loaded into Gephi. You will have to use that network program to lay it out yourself. <strong>Full text</strong> file. In it, each website within the web archive collection will have its full text presented on one line, along with information around when it was crawled, the name of the domain, and the full URL of the content. <strong>Domains count</strong> file. A text file containing the frequency count of domains captured within your web archive.
DOI: 10.15468/majmyc
title: Twenty-six new species of Hoploscopa (Lepidoptera, Crambidae) from South-East Asia revealed by morphology and DNA barcoding

description: This dataset contains the digitized treatments in Plazi based on the original journal article Leger, Theo, Kehlmaier, Christian, Vairappan, Charles S., Nuss, Matthias (2020): Twenty-six new species of Hoploscopa (Lepidoptera, Crambidae) from South-East Asia revealed by morphology and DNA barcoding. ZooKeys 907: 1-99, DOI: http://dx.doi.org/10.3897/zookeys.907.36563, URL: http://dx.doi.org/10.3897/zookeys.907.36563
DOI: 10.17632/wy5fzdcrw3.1
title: Teaching of the theme “Manas and manastelling skill” by critical thinking

description: Each storyteller is a unique and talented individual who have creative potential, their dasmiyas are different from one another depending on the miraculous properties.
DOI: 10.25345/c5qm4r
title: MassIVE MSV000084870 - neg_acute_chagas_carnitine_ddms2
title: Negaive polarity ddMS2 experiment of Chagas disease acute phase in mice treated by carnitine
DOI: 10.17632/wp29ywxzvt.1
title: Nest Usurpation by Non-native Birds and the Role of People in Nest Box Management

description: Abstract: Invasive species are a threat to global biodiversity, yet the impacts of invasive birds on the native birds with which they compete are understudied. Humans have a long history of providing and managing nest boxes to support native birds; however, their management of non-native birds has received limited research attention. We surveyed people who maintain nest boxes in North America to examine the extent of interference competition for nest sites between native and non-native birds and the human behaviors intended to reduce nest site competition. Our specific objectives were to examine observations of nest usurpation of native birds by non-native birds across the U.S. and Canada, to ascertain whether and how people who maintain nest boxes control non-native bird species in favor of native species, and to quantify various factors correlated with the likelihood of engaging in management activities. We found that nearly one-third of the 871 respondents had observed a non-native species usurp a nest box occupied by a native species. Among respondents who reported nest usurpations, species-specific nest usurpation rates varied (range = 3–35%). We found that witnessing a nest usurpation is the most important predictor of whether or not someone will engage in management activities. Management activity was also associated with the extent to which respondents believed non-native birds to be a problem at the continental scale. Our study shows that people’s observations of threats from introduced species are correlated with the environmental management actions people take, and that these actions can mitigate the threats, and potentially support the survival of native birds. In order to interpret and use the data, you will need to download the manuscript of the same name from Conservation Science and Practice, along with the supporting information. We include SAS code and two data files referenced in the manuscript.
DOI: 10.17632/76rw6jb9bw.1
title: Messina & Lindell Instagram Ad Perceptions Data
DOI: 10.5281/zenodo.3631507
title: Ensemble calculations of "Hot Days" from EURO-CORDEX data for Europe

description: <strong>Climate Index: </strong>Hot days <strong>Definition:</strong> Number of days with daily maximum temperature above 30°C. <strong>Additional information:</strong> The dataset is based on an ensemble of EURO-CORDEX model simulations of daily near-surface maximum temperature. All ensemble members are bias-corrected against the gridded daily observational dataset E-OBS. Results (ensemble mean and standard deviation) are available for historical (1971-2000) and future (2011-2040, 2041-2070, 2071-2100) climate periods and for the representative concentration pathways RCP2.6, RCP4.5 and RCP8.5. The bias-corrected EURO-CORDEX climate model simulations used are: CLMcom-CCLM4-8-17/ICHEC-EC-EARTH, CLMcom-CCLM4-8-17/MOHC-HadGEM2-ES DMI-HIRHAM5/ICHEC-EC-EARTH KNMI-RACMO22E/ICHEC-EC-EARTH, KNMI-RACMO22E/MOHC-HadGEM2-ES SMHI-RCA4/ICHEC-EC-EARTH, SMHI-RCA4/MOHC-HadGEM2-ES
DOI: 10.5281/zenodo.3631508
title: Ensemble calculations of "Hot Days" from EURO-CORDEX data for Europe

description: <strong>Climate Index: </strong>Hot days <strong>Definition:</strong> Number of days with daily maximum temperature above 30°C. <strong>Additional information:</strong> The dataset is based on an ensemble of EURO-CORDEX model simulations of daily near-surface maximum temperature. All ensemble members are bias-corrected against the gridded daily observational dataset E-OBS. Results (ensemble mean and standard deviation) are available for historical (1971-2000) and future (2011-2040, 2041-2070, 2071-2100) climate periods and for the representative concentration pathways RCP2.6, RCP4.5 and RCP8.5. The bias-corrected EURO-CORDEX climate model simulations used are: CLMcom-CCLM4-8-17/ICHEC-EC-EARTH, CLMcom-CCLM4-8-17/MOHC-HadGEM2-ES DMI-HIRHAM5/ICHEC-EC-EARTH KNMI-RACMO22E/ICHEC-EC-EARTH, KNMI-RACMO22E/MOHC-HadGEM2-ES SMHI-RCA4/ICHEC-EC-EARTH, SMHI-RCA4/MOHC-HadGEM2-ES
DOI: 10.17632/jchg5h3t5k.1
title: Symbiosis between river and dry lands: phycobiont dynamics on river gravel bars (Supplementary datasets))

description: Multiple alignments of the ITS rDNA (of Asterochloris and Stereocaulon) and actin type I loci sequences built using MAFFT v7, applying the Q-INS-i strategy.
DOI: 10.5286/isis.e.rb1920587
title: In-situ tensile loading of additively manufactured (AM) Laser Beam Melted (LBM) AISI 316L

description: Additive manufacturing (AM) or 3D printing is a rapidly developing field which produces parts in a layer wise fashion by selectively melting and solidifying to build a structure of a desired geometry. This method permits a greater freedom of design compared to conventional manufacturing processes. The material produced by AM can have a different structure of the metal grains which can lead to significantly different mechanical properties. In order to understand the origin of these different (and sometime improved) mechanical properties, it is proposed to conduct an experiment on ENGIN-X whereby the deformaion mechanisms in AM are explored via tensile testing in the neutron beam. This will allow the modes of deformation to compared to conventionally manufactured material and will validate simulation models being developed at the BAM.
DOI: 10.5286/isis.e.rb1920587-1
title: In-situ tensile loading of additively manufactured (AM) Laser Beam Melted (LBM) AISI 316L

description: Additive manufacturing (AM) or 3D printing is a rapidly developing field which produces parts in a layer wise fashion by selectively melting and solidifying to build a structure of a desired geometry. This method permits a greater freedom of design compared to conventional manufacturing processes. The material produced by AM can have a different structure of the metal grains which can lead to significantly different mechanical properties. In order to understand the origin of these different (and sometime improved) mechanical properties, it is proposed to conduct an experiment on ENGIN-X whereby the deformaion mechanisms in AM are explored via tensile testing in the neutron beam. This will allow the modes of deformation to compared to conventionally manufactured material and will validate simulation models being developed at the BAM.
DOI: 10.5286/isis.e.rb2010759
title: The structure of LiPON and NaPON glass

description: Lithium (LiPO3) and sodium (NaPO3) metaphosphate glasses show improved ionic conductivity when some of the oxygen in the phosphate tetrahedron is replaced by nitrogen. As such they are potential solid state electrolytes in battery applications. The goal of this rapid access proposal is to determine the structure of these glasses using neutron diffraction to evaluate the changes in structure that occur as nitrogen replaces oxygen. There are significant changes in the structure of these LiPON and NaPON glasses as nitrogen is added, there are apparently different types of nitrogen present and mixtures of phosphate chains and clusters and different degrees of distortion of the phosphate polyhedra, these strongly influence the dynamics of the glass and the ionic conductivity. The proposed neutron experiment will provide insight into the topology of these technologically interesting glasses.
DOI: 10.5286/isis.e.rb2010759-1
title: The structure of LiPON and NaPON glass

description: Lithium (LiPO3) and sodium (NaPO3) metaphosphate glasses show improved ionic conductivity when some of the oxygen in the phosphate tetrahedron is replaced by nitrogen. As such they are potential solid state electrolytes in battery applications. The goal of this rapid access proposal is to determine the structure of these glasses using neutron diffraction to evaluate the changes in structure that occur as nitrogen replaces oxygen. There are significant changes in the structure of these LiPON and NaPON glasses as nitrogen is added, there are apparently different types of nitrogen present and mixtures of phosphate chains and clusters and different degrees of distortion of the phosphate polyhedra, these strongly influence the dynamics of the glass and the ionic conductivity. The proposed neutron experiment will provide insight into the topology of these technologically interesting glasses.
DOI: 10.17632/gwcs3h598t.1
title: hGH transgenic cell and pig genome PCR

description: confirmation of transgenic PFF cell line establish by PCR and hGH transgenic pig genomic PCR. This data is original underlying image for journal submission.