cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9165410
title: Genomic position of vaccine targets for identification of genomic islands through GIPSY from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The table shows the genomic position of each vaccine target in their respective lineage. These data were submitted to the GIPSY program to evaluate which of these proteins were found in genomic islands.
DOI: 10.6084/m9.figshare.9165410.v1
title: Genomic position of vaccine targets for identification of genomic islands through GIPSY from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The table shows the genomic position of each vaccine target in their respective lineage. These data were submitted to the GIPSY program to evaluate which of these proteins were found in genomic islands.
DOI: 10.6084/m9.figshare.9165401
title: Proteins identified in some bacterial strains of <i>M. pneumonia</i> of interest. from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The file contains the names of proteins belonging to some but not all bacterial strains of <i>M. pneumonia</i>.
DOI: 10.6084/m9.figshare.9165401.v1
title: Proteins identified in some bacterial strains of <i>M. pneumonia</i> of interest. from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The file contains the names of proteins belonging to some but not all bacterial strains of <i>M. pneumonia</i>.
DOI: 10.6084/m9.figshare.9165389
title: Protein interactions of the Drug target Hypothetical protein MPN423 from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Hypothetical protein MPN423 according to STRING.
DOI: 10.6084/m9.figshare.9165383
title: Protein interactions of the Drug target Transcriptional regulator MraZ from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Transcriptional regulator MraZ according to STRING.
DOI: 10.6084/m9.figshare.9165389.v1
title: Protein interactions of the Drug target Hypothetical protein MPN423 from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Hypothetical protein MPN423 according to STRING.
DOI: 10.6084/m9.figshare.9165383.v1
title: Protein interactions of the Drug target Transcriptional regulator MraZ from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target Transcriptional regulator MraZ according to STRING.
DOI: 10.6084/m9.figshare.9165371
title: Orthogroups from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The set of genes that descend from a single gene in the last common ancestor of all lineages of interest
DOI: 10.6084/m9.figshare.9165368
title: DEG results from Vaccine targets from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: BLAST results of vaccine targets from Essential Gene Database DEG.
DOI: 10.6084/m9.figshare.9165371.v1
title: Orthogroups from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The set of genes that descend from a single gene in the last common ancestor of all lineages of interest
DOI: 10.6084/m9.figshare.9165365
title: Protein interactions of the drug target dTIGR00282 family metallophosphoesterase from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target dTIGR00282 family metallophosphoesterase according to STRING.
DOI: 10.6084/m9.figshare.9165359
title: Proteins identified in all strains of <i>M. pneumonia</i> of interest from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The file contains the names of proteins common to all bacterial strains of interest, which were identified from the core genome.
DOI: 10.6084/m9.figshare.9165365.v1
title: Protein interactions of the drug target dTIGR00282 family metallophosphoesterase from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: Description of proteins that interact with Drug target dTIGR00282 family metallophosphoesterase according to STRING.
DOI: 10.6084/m9.figshare.9165353
title: Genomic position of drug targets for identification of genomic islands through GIPSY from Reverse vaccinology and subtractive genomics reveal new therapeutic targets against <i>Mycoplasma pneumoniae</i>: a causative agent of pneumonia

description: The table shows the genomic position of each drug target in their respective lineage. These data were submitted to the GIPSY program to evaluate which of these proteins were found in genomic islands.
DOI: 10.6084/m9.figshare.9165344
title: TEM Temperature Calibration Data

description: Calibration Data for Sensors on the HP3 Tether (TEM-P) and the heaters/sensors in the HP3 mole (TEM-A).<br>
DOI: 10.6084/m9.figshare.9165344.v1
title: TEM Temperature Calibration Data

description: Calibration Data for Sensors on the HP3 Tether (TEM-P) and the heaters/sensors in the HP3 mole (TEM-A).<br>
DOI: 10.6084/m9.figshare.9165314
title: Supporting information Eumitrins C-E 2019

description: output of the DFT calculations used for the determination of the relative and absolute configurations
DOI: 10.6084/m9.figshare.9165314.v1
title: Supporting information Eumitrins C-E 2019

description: output of the DFT calculations used for the determination of the relative and absolute configurations
DOI: 10.6084/m9.figshare.9165296
title: 8 newly assembled genomes from available raw-read data

description: New genome assemblies based on previously published raw-read data of the following eight teleost fish species:Caranx ignobilis (Caig.scf.fasta)Caranx melampygus (Came.scf.fasta)Clupea harengus (Clha.scf.fasta)Cyprinus carpio (Cyca.scf.fasta)Electrophorus electricus (Elel.scf.fasta)Epinephelus aeneus (Epae.scf.fasta)Monopterus albus (Moal.scf.fasta)Pimephales promelas (Pipr.scf.fasta)<br>For details and the original accession numbers, see Table S1 of Musilova et al. (2019).
DOI: 10.6084/m9.figshare.9165245
title: "Prior distributions for variance parameters in a sparse-event meta-analysis of a few small trials" simulation datasets and code

description: The data were derived through simulation based on the article "Prior distributions for variance parameters in a sparse-event meta-analysis of a few small trials" . The following variables are included in the dataset. The first are parameters that control the simulation "pControl" "samples" "truetheta" "nsim" "truetau2" "nstud" "prior" "priorlogOR" "Likelihood" <br><br>The following are measures that are presented within the manuscript "logOR" "sdlogOR" "logOR025" "logOR500" "logOR975" "FlogOR" "sdFlogOR" "FlogOR025" "FlogOR500" "FlogOR975" "tau2" "sdtau2" "tau2025" "tau2500" "tau2975" <br><br>The last variables are auxiliary variables that were used for clarifications and describe the number of zero arms, double zero arms in the individual trials and in the meta-analysis.<br>"Zeroarms" "DoubleZeroArms" "ZeroArmsMA" "DZArmsMA"<br>Datafile Resulstau01.rdata contains the initial results with the model mentioned in the discussion applied. See upcoming article.<br>Datafile Resultstau_REV.rdata contains the revised simulation with the model 1 applied. See upcoming article.<br><br>The file Priors.R contains the main routine to estimate the parameters of the simulation.<br>
DOI: 10.6084/m9.figshare.9165248
title: Supplementary Material for: Wall-Eyed Monocular Internuclear Ophthalmoplegia (WEMINO) and Millard-Gubler Syndromes in a Patient with Isolated Pontine Infarction: Topographic, Oculomotor, and Radiological Analysis of Two Very Uncommon Conditions

description: The syndromes of wall-eyed monocular internuclear ophthalmoplegia and Millard-Gubler are very rare clinical complexes commonly caused by pontine infarction, hemorrhage, or tumors that compromise the paramedian tegmentum, medial longitudinal fascicle, and the basis pontis. We present the case of a 58-year-old female with an isolated pontine infarction characterized by acute vertigo, sudden horizontal diplopia due to ipsilateral internuclear ophthalmoplegia with exotropia, facial palsy and contralateral hemiparesis. This report analyzes, theorizes, and emphasizes the correlation between these atypical neurological findings, the pontine anatomy, and magnetic resonance imaging; encouraging the clinician to make expeditious diagnoses using the bedside skills and a high-quality oculomotor clinical examination. The phenotype and simultaneity of both syndromes makes this case a didactic exercise for the topo-diagnosis based on the neurology of eye movements, the intrinsic physiology of the pons, and the pathways that emerge or project towards it.
DOI: 10.6084/m9.figshare.9165248.v1
title: Supplementary Material for: Wall-Eyed Monocular Internuclear Ophthalmoplegia (WEMINO) and Millard-Gubler Syndromes in a Patient with Isolated Pontine Infarction: Topographic, Oculomotor, and Radiological Analysis of Two Very Uncommon Conditions

description: The syndromes of wall-eyed monocular internuclear ophthalmoplegia and Millard-Gubler are very rare clinical complexes commonly caused by pontine infarction, hemorrhage, or tumors that compromise the paramedian tegmentum, medial longitudinal fascicle, and the basis pontis. We present the case of a 58-year-old female with an isolated pontine infarction characterized by acute vertigo, sudden horizontal diplopia due to ipsilateral internuclear ophthalmoplegia with exotropia, facial palsy and contralateral hemiparesis. This report analyzes, theorizes, and emphasizes the correlation between these atypical neurological findings, the pontine anatomy, and magnetic resonance imaging; encouraging the clinician to make expeditious diagnoses using the bedside skills and a high-quality oculomotor clinical examination. The phenotype and simultaneity of both syndromes makes this case a didactic exercise for the topo-diagnosis based on the neurology of eye movements, the intrinsic physiology of the pons, and the pathways that emerge or project towards it.
DOI: 10.6084/m9.figshare.9165245.v1
title: "Prior distributions for variance parameters in a sparse-event meta-analysis of a few small trials" simulation datasets and code

description: The data were derived through simulation based on the article "Prior distributions for variance parameters in a sparse-event meta-analysis of a few small trials" . The following variables are included in the dataset. The first are parameters that control the simulation "pControl" "samples" "truetheta" "nsim" "truetau2" "nstud" "prior" "priorlogOR" "Likelihood" <br><br>The following are measures that are presented within the manuscript "logOR" "sdlogOR" "logOR025" "logOR500" "logOR975" "FlogOR" "sdFlogOR" "FlogOR025" "FlogOR500" "FlogOR975" "tau2" "sdtau2" "tau2025" "tau2500" "tau2975" <br><br>The last variables are auxiliary variables that were used for clarifications and describe the number of zero arms, double zero arms in the individual trials and in the meta-analysis.<br>"Zeroarms" "DoubleZeroArms" "ZeroArmsMA" "DZArmsMA"<br>Datafile Resulstau01.rdata contains the initial results with the model mentioned in the discussion applied. See upcoming article.<br>Datafile Resultstau_REV.rdata contains the revised simulation with the model 1 applied. See upcoming article.<br><br>The file Priors.R contains the main routine to estimate the parameters of the simulation.<br>
DOI: 10.6084/m9.figshare.9165161
title: Experiment data

description: Experiment data performed both on natural and synthetic images.
DOI: 10.6084/m9.figshare.9165161.v1
title: Experiment data

description: Experiment data performed both on natural and synthetic images.
DOI: 10.6084/m9.figshare.9165026
title: Stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9165026.v1
title: Stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9165002
title: Lattice Boltzmann model C code file from Boolean logic by convective obstacle flows

description: This file can be compiled using an MPI C compiler and run in parallel to reproduce all the results in the present work.
DOI: 10.6084/m9.figshare.9164999
title: Supplemental data from Novel cooperative antipredator tactics of an ant specialized against a snake

description: The full dataset used for analyses in this study.
DOI: 10.6084/m9.figshare.9165002.v1
title: Lattice Boltzmann model C code file from Boolean logic by convective obstacle flows

description: This file can be compiled using an MPI C compiler and run in parallel to reproduce all the results in the present work.
DOI: 10.6084/m9.figshare.9164684
title: Quantile Risk Hedging

description: Dataset is used for research purpose only.
DOI: 10.6084/m9.figshare.9164636
title: Untitled Item

description: dfgdg
DOI: 10.6084/m9.figshare.9164660
title: Line impedance stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9164660.v1
title: Line impedance stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9164684.v2
title: Quantile Risk Hedging

description: Dataset is used for research purpose only.
DOI: 10.6084/m9.figshare.9164684.v1
title: Quantile Risk Hedging

description: Dataset is used for research purpose only.
DOI: 10.6084/m9.figshare.9164561
title: Line impedance stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9164636.v2
title: Untitled Item

description: dfgdg
DOI: 10.6084/m9.figshare.9164510
title: DeepMoney: Counterfeit Money Detection Using Generative Adversarial Networks

description: Conventional paper currency and modern electronic currency are two important modes of transactions. In several parts of the world, conventional methodology has clear precedence over its electronic counterpart. However, the identification of forged currency paper notes is now becoming an increasingly crucial problem because of the new and improved tactics employed by counterfeiters. In this paper, a machine assisted system – dubbed DeepMoney– is proposed which has been developed to discriminate fake notes from genuine ones. For this purpose, state-of-the-art models of machine learning called Generative Adversarial Networks (GANs) are employed. GANs use an unsupervised learning to train a model that can then be used to perform supervised predictions. This flexibility provides the best of both worlds by allowing unlabelled data to be trained on whilst still making concrete predictions. This technique was applied to Pakistani banknotes. State-of-the-art image processing and feature recognition techniques were used to design the overall approach of a valid input. Augmented samples of images were used in the experiments which show that a high-precision machine can be developed to recognize genuine paper money. An accuracy of 80% has been achieved. The code is available as an open source to allow others to reproduce and build upon the efforts already made.<br>
DOI: 10.6084/m9.figshare.9164636.v1
title: Untitled Item

description: dfgdg
DOI: 10.6084/m9.figshare.9164561.v2
title: Line impedance stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9164561.v1
title: The detailed line impedance cooperative stability region

description: Dataset for the detailed line impedance cooperative stability region.
DOI: 10.6084/m9.figshare.9164399
title: Transcriptional data of LN229 with or without TTF2 knock-down.xlsx

description: The transcriptional expression level of LN229 cell with or without knock-down mRNA expression of TTF2.
DOI: 10.6084/m9.figshare.9164510.v1
title: testing-file-upload

description: Testing data
DOI: 10.6084/m9.figshare.9164399.v1
title: Transcriptional data of LN229 with or without TTF2 knock-down.xlsx

description: The transcriptional expression level of LN229 cell with or without knock-down mRNA expression of TTF2.
DOI: 10.6084/m9.figshare.9164510.v2
title: DeepMoney: Counterfeit Money Detection Using Generative Adversarial Networks

description: Conventional paper currency and modern electronic currency are two important modes of transactions. In several parts of the world, conventional methodology has clear precedence over its electronic counterpart. However, the identification of forged currency paper notes is now becoming an increasingly crucial problem because of the new and improved tactics employed by counterfeiters. In this paper, a machine assisted system – dubbed DeepMoney– is proposed which has been developed to discriminate fake notes from genuine ones. For this purpose, state-of-the-art models of machine learning called Generative Adversarial Networks (GANs) are employed. GANs use an unsupervised learning to train a model that can then be used to perform supervised predictions. This flexibility provides the best of both worlds by allowing unlabelled data to be trained on whilst still making concrete predictions. This technique was applied to Pakistani banknotes. State-of-the-art image processing and feature recognition techniques were used to design the overall approach of a valid input. Augmented samples of images were used in the experiments which show that a high-precision machine can be developed to recognize genuine paper money. An accuracy of 80% has been achieved. The code is available as an open source to allow others to reproduce and build upon the efforts already made.<br>
DOI: 10.6084/m9.figshare.9164315.v1
title: Circadian Oscillations Persist in Low Malignancy Breast Cancer Cells

description: Epidemiological studies have shown that humans with altered circadian rhythms have higher cancer incidence, with breast cancer being one of the most cited examples. To uncover how circadian disruptions may be correlated with breast cancer and its development, prior studies have assessed the expression of <i>BMAL1</i> and <i>PER2</i> core clock genes via RT-qPCR and western blot analyses. These and our own low-resolution data show that <i>BMAL1</i> and <i>PER2</i> expression are suppressed and arrhythmic. We hypothesized that oscillations persist in breast cancer cells, but due to limitations of protocols utilized, cannot be observed. This is especially true where dynamic changes may be subtle. In the present work, we generated luciferase reporter cell lines representing high- and low-grade breast cancers to assess circadian rhythms. We tracked signals for <i>BMAL1</i> and <i>PER2</i> to determine whether and to what extent oscillations exist and provide initial correlations of circadian rhythm alterations with breast cancer aggression. In contrast to previous studies, where no oscillations were apparent in any breast cancer cell line, our luminometry data reveal that circadian oscillations of <i>BMAL1</i> and <i>PER2</i> in fact exist in the low-grade, luminal A MCF7 cells but are not present in high-grade, basal MDA-MB-231 cells. To our knowledge, this is the first evidence of core circadian clock oscillations in breast cancer cells. This work also suggests that circadian rhythms are further disrupted in more aggressive/high tumor grades of breast cancer, and that use of real time luminometry to study additional representatives of breast and other cancer subtypes is merited.
DOI: 10.6084/m9.figshare.9164006
title: supplementary.zip

description: supplementary for <b>Eliminate blood oncogenic exosomes</b>
DOI: 10.6084/m9.figshare.9164006.v1
title: supplementary.zip

description: supplementary for <b>Eliminate blood oncogenic exosomes</b>
DOI: 10.6084/m9.figshare.9163724
title: Hervé & Erb Oecologia 2019

description: Raw datasets of all experiments performed in Hervé & Erb (2019) Distinct defense strategies allow different grassland species to cope with root herbivore attack, Oecologia.<br>
DOI: 10.26180/5d8c82cb98714
title: Appendix 1

description: Whole rock geochemistry
DOI: 10.6084/m9.figshare.9163586
title: Nonparametric optimal designs for degradation tests

description: This paper discusses the optimal design of a degradation test within the nonparametric framework by assuming the underlying process to be an empirical Lévy process with heterogeneity. The optimization of the experiment relies on the design variables including the sample size, the measurement frequency and total operation time. It is necessary to investigate the effect of the design variables on the estimation of first passage time (FPT). Subject to total experimental cost not exceeding a pre-specified budget, the values of design variables are determined such that the bootstrap mean square error of the 100pth percentile of the FPT distribution is minimized.
DOI: 10.6084/m9.figshare.9163724.v1
title: Hervé & Erb Oecologia 2019

description: Raw datasets of all experiments performed in Hervé & Erb (2019) Distinct defense strategies allow different grassland species to cope with root herbivore attack, Oecologia.<br>
DOI: 10.6084/m9.figshare.9163586.v1
title: Nonparametric optimal designs for degradation tests

description: This paper discusses the optimal design of a degradation test within the nonparametric framework by assuming the underlying process to be an empirical Lévy process with heterogeneity. The optimization of the experiment relies on the design variables including the sample size, the measurement frequency and total operation time. It is necessary to investigate the effect of the design variables on the estimation of first passage time (FPT). Subject to total experimental cost not exceeding a pre-specified budget, the values of design variables are determined such that the bootstrap mean square error of the 100pth percentile of the FPT distribution is minimized.
DOI: 10.26180/5d8c82bd0aaaf
title: Appendix 2

description: Geochronology and mineral geochemistry
DOI: 10.6084/m9.figshare.9163376
title: Additional file 6: of A case of intraplacental gestational choriocarcinoma; characterised by the methylation pattern of the early placenta and an absence of driver mutations

description: Table S6 Methylation profiles of individual probes mapping within CIMP domains. (XLSX 39 kb)
DOI: 10.6084/m9.figshare.9163367
title: Additional file 5: of A case of intraplacental gestational choriocarcinoma; characterised by the methylation pattern of the early placenta and an absence of driver mutations

description: Table S5 Methylation profiles of individual probes mapping within placenta specific imprinted DMRs. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.9163376.v1
title: Additional file 6: of A case of intraplacental gestational choriocarcinoma; characterised by the methylation pattern of the early placenta and an absence of driver mutations

description: Table S6 Methylation profiles of individual probes mapping within CIMP domains. (XLSX 39 kb)