cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4551243
title: 2019 burned area map for Indonesia using Sentinel-2 data

description: The dataset '<em>2019_burnedarea_indonesia' </em>contains an Indonesia-wide map of burned areas for 2019 derived based on an analysis of time-series Sentinel-2 imagery at spatial resolution: 20 m x 20 m. The reference dataset '<em>Reference_dataset'</em> contains 1298 randomly-distributed reference sites used to validate the burned area dataset (SENTINEL) and two other burned area products: 1) the 2019 Landsat-8 Official estimate from the Indonesian Ministry of Environment and Forestry, and 2) the 2019 MODIS burned area product (MCD64A1). Each reference site includes attribute ‘REFERENCE’ to describe the values obtained by visual interpretation: either ‘NO’ unburned or ‘YES’ burned. Each reference point has three attributes: ‘C_SENTINEL’, ‘C_OFFICIAL’ and ‘C_MCD64A1’ to describe the values of the classification of each burned area product: either ‘NO’ unburned or ‘YES’ burned. Finally, each reference point has three additional attributes: ‘SENTINEL’, ‘OFFICIAL’, and MCD64A1’ to describe which burned area product this reference point validates. The values are either 0: not validate or 1: validate.
DOI: 10.6084/m9.figshare.20626406.v1
title: Additional file 1 of Circulating exosomal mRNA signatures for the early diagnosis of clear cell renal cell carcinoma

description: Additional file 1: Fig. S1. Quality control ofexosome isolation and verification. Fig.S2. Circulating exosomal RNA screening and testing. Fig. S3. The performance of candidate emRNAs for screeninglocalized clear cell renal cell carcinoma (ccRCC) patients from healthycontrols and differentiating ccRCCs from patients with benign renal masses. Fig. S4. AUC of the signature derivedto distinguish ccRCC from healthy controls for ccRCC versus benign renal masses(AUC = 0.559).
DOI: 10.6084/m9.figshare.5946391
title: Identification of new benzamide inhibitor against <i>α</i>-subunit of tryptophan synthase from <i>Mycobacterium tuberculosis</i> through structure-based virtual screening, anti-tuberculosis activity and molecular dynamics simulations

description: Multi-drug-resistant tuberculosis and extensively drug-resistant tuberculosis has emerged as global health threat, causing millions of deaths worldwide. Identification of new drug candidates for tuberculosis (TB) by targeting novel and less explored protein targets will be invaluable for antituberculosis drug discovery. We performed structure-based virtual screening of eMolecules database against a homology model of relatively unexplored protein target: the <i>α</i>-subunit of tryptophan synthase (<i>α</i>-TRPS) from <i>Mycobacterium tuberculosis</i> essential for bacterial survival. Based on physiochemical properties analysis and molecular docking, the seven candidate compounds were selected and evaluated through whole cell-based activity against the H37Rv strain of <i>M. tuberculosis</i>. A new Benzamide inhibitor against <i>α</i>-subunit of tryptophan synthase (<i>α</i>-TRPS) from <i>M. tuberculosis</i> has been identified causing 100% growth inhibition at 25 μg/ml and visible bactericidal activity at 6 μg/ml. This benzamide inhibitor displayed a good predicted binding score (−48.24 kcal/mol) with the <i>α</i>-TRPS binding pocket and has logP value (2.95) comparable to Rifampicin. Further refinement of docking results and evaluation of inhibitor-protein complex stability were investigated through Molecular dynamic (MD) simulations studies. Following MD simulations, Root mean square deviation, Root mean square fluctuation and secondary structure analysis confirmed that protein did not unfold and ligand stayed inside the active pocket of protein during the explored time scale. This identified benzamide inhibitor against the <i>α</i>-subunit of TRPS from <i>M. tuberculosis</i> could be considered as candidate for drug discovery against TB and will be further evaluated for enzyme-based inhibition in future studies.
DOI: 10.5281/zenodo.3998826
title: A Dataset of European Union Land Cover Validation Samples

description: A dataset of European Union land cover validation samples in 2015 and 2010 based on the LUCAS micro dataset ( publicly available at https://ec.europa.eu/eurostat/web/lucas/data/lucas-grid ) . The dataset provides 9 land cover types of land cover including cropland, forest, grassland, shrubland, wetland, water, bareland, impervious surface and permanent snow/ice. The dataset is provided in .csv format.
DOI: 10.6084/m9.figshare.20098400.v1
title: Additional file 3 of Cellular and antibody response in GMZ2-vaccinated Gabonese volunteers in a controlled human malaria infection trial

description: Additional file 3: Table S3. The antibody response against the vaccine antigen (GMZ2) or any of the main components (MSP3, GLURP), estimated before vaccination, was tested for correlation with any of the antibody responses, as estimated by the protein microarray before CHMI. The log-transformed ELISA data and the protein microarray data were tested usind Student's t-test for correlation. Antigens with correlations resulting in p-values &lt; 0.05 are shown.
DOI: 10.6084/m9.figshare.22199830
title: Crosstalk between m6A mRNAs and m6A circRNAs and the time-specific biogenesis of m6A circRNAs after OGD/R in primary neurons

description: Cerebral ischaemiareperfusion injury is an important pathological process in nervous system diseases during which neurons undergo oxygenglucose deprivation and reoxygenation (OGD/R) injury. No study has used epitranscriptomics to explore the characteristics and mechanism of injury. N6methyladenosine (m6A) is the most abundant epitranscriptomic RNA modification. However, little is known about m6A modifications in neurons, especially during OGD/R. m6A RNA immunoprecipitation sequencing (MeRIPseq) and RNA-sequencing data for normal and OGD/R-treated neurons were analysed by bioinformatics. MeRIP quantitative real-time polymerase chain reaction was used to determine the m6A modification levels on specific RNAs. We report the m6A modification profiles of the mRNA and circRNA transcriptomes of normal and OGD/R-treated neurons. Expression analysis revealed that the m6A levels did not affect m6A mRNA or m6A circRNA expression. We found crosstalk between m6A mRNAs and m6A circRNAs and identified three patterns of m6A circRNA production in neurons; thus, distinct OGD/R treatments induced the same genes to generate different m6A circRNAs. Additionally, m6A circRNA biogenesis during distinct OGD/R processes was found to be time specific. These results expand our understanding of m6A modifications in normal and OGD/R-treated neurons, providing a reference to explore epigenetic mechanisms and potential treatments for OGD/R-related diseases.
DOI: 10.6084/m9.figshare.12762682.v1
title: Additional file 2 of Inverse correlation between Interleukin-34 and gastric cancer, a potential biomarker for prognosis

description: Additional file 2: Figure S2. Correlation of MCSF and CD68+ TAMs with clinicopathological parameters of age, gender and differentiation subtypes of GC. MCSF and CD68+ TAMs both have no correlations with any clinicopathological parameters of age, gender and differentiation subtypes of GC.
DOI: 10.6084/m9.figshare.6470834
title: Additional file 3: of Necrotizing enterocolitis is associated with acute brain responses in preterm pigs

description: Table S2. Differentially expressed genes (DEGs) between Co-NEC and No-NEC groups. Listed are all the identified DEGs (q value &lt; 0.2), with corresponding location, average FPKM in each group, the (base 2) log of the fold change, the value of the test statistic from Cufflinks, the uncorrected p-value and FDR-adjusted p-value (q value). Table S3. Differentially expressed genes (DEGs) between Si-NEC and No-NEC groups. Listed are all the identified DEGs (q value &lt; 0.2), with corresponding location, average FPKM in each group, the (base 2) log of the fold change, the value of the test statistic from Cufflinks, the uncorrected p-value and FDR-adjusted p-value (q value). Table S4. Differentially expressed genes (DEGs) between Si-NEC and Co-NEC groups. Listed are all the identified DEGs (q value &lt; 0.2), with corresponding location, average FPKM in each group, the (base 2) log of the fold change, the value of the test statistic from Cufflinks, the uncorrected p-value and FDR-adjusted p-value (q value). Table S5. Gene ontology enrichment analysis of DEGs between NEC and No-NEC groups. Listed are enriched gene ontology terms, corrected p-values and involved genes. Table S6. List of gene names, primer sequences and amplicon length of all primers, used in the study. *, reference genes. (XLSX 61 kb)
DOI: 10.34808/gntf-tw90
title: SEM-EDS images of expanded polystyrene spheres coated with silicon dioxide (SiO2) and/or titanium dioxide (TiO2)

description: Data contain SEM and SEM-EDS images of expanded polystyrene spheres coated with silicon dioxide (SiO2) and/or titanium dioxide (TiO2). The detailed equipment and measurement data was described in measurement info.txt file.
DOI: 10.6084/m9.figshare.7523693
title: MOESM1 of Integrated analysis of dysregulated long non-coding RNAs/microRNAs/mRNAs in metastasis of lung adenocarcinoma

description: Additional file 1. Clinical data of LUAD from TCGA cohort.
DOI: 10.6084/m9.figshare.6999416
title: Additional file 2: of Welding fume exposure is associated with inflammation: a global metabolomics profiling study

description: Table S1. Statistical summary of the 693 metabolites. Table S2.Sensitivity analysis that only keep the male workers. Table S3. MSEA analysis for disease-associated metabolite sets (blood). (XLSX 318 kb)
DOI: 10.6084/m9.figshare.21151142.v1
title: Additional file 5 of Super-enhancer-associated INSM2 regulates lipid metabolism by modulating mTOR signaling pathway in neuroblastoma

description: Additional file 5: Full quantitative lipomics detection of SK-N-BE(2) cells.
DOI: 10.34740/kaggle/ds/2277471
title: Filtered direct numerical simulation dataset
DOI: 10.34740/kaggle/dsv/4002053
title: COVID Vaccination in World (updated daily)
DOI: 10.5281/zenodo.6136935
title: Data of " Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behavior"

description: <pre>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data) title = "Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behavior", journal = "Polymer Testing", pages = " ", year = "2022", issn = "####", doi = "https://doi.org/10.1016/j.polymertesting.2022.107556", author = "L. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus"</pre> This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862015
DOI: 10.5281/zenodo.6136933
title: Data of " Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behavior"

description: <pre>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data) title = "Micromechanical characterization of the material response in a PA12-SLS fabricated lattice structure and its correlation with bulk behavior", journal = "Polymer Testing", pages = " ", year = "2022", issn = "####", doi = "https://doi.org/10.1016/j.polymertesting.2022.107556", author = "L. Cobian, M. Rueda-Ruiz, J.P. Fernandez-Blazquez, V. Martinez, F. Galvez, F. Karayagiz, T. Lück, J. Segurado, M.A. Monclus"</pre> This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 862015
DOI: 10.5281/zenodo.6940007
title: GENEA Challenge 2022 subjective evaluation data

description: This zip archive contains user-study response data and associated analyses and analysis results from the GENEA Challenge 2022 (https://youngwoo-yoon.github.io/GENEAchallenge2022/). The code was written by Gustav Eje Henter and is released under a Creative Commons Attribution 4.0 International license. If you use this material, please cite the following paper: Youngwoo Yoon, Pieter Wolfert, Taras Kucherenko, Carla Viegas, Teodor Nikolov, Mihail Tsakov, and Gustav Eje Henter. 2022. The GENEA Challenge 2022: A large evaluation of data-driven co-speech gesture generation. In Proceedings of the ACM International Conference on Multimodal Interaction (ICMI '22). ACM
DOI: 10.7284/148893
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP0403 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148895
title: Gyrocompass data collected during research cruise NBP0403 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148815
title: Multibeam Echosounder data collected during research cruise NBP0406 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20402178
title: Regulatory elements of six species

description: Within each species, the consensus peaks of H3K27ac and H3K4me3 overlapped to define regulatory regions enriched for H3K27ac only or both using intersectBed from bedtools v2.30.0. We defined two categories of regulatory regions: 1) promoter, which simultaneously marked by H3K4me3 and H3K27ac with at least 50% overlap of their length, and 2) enhancer, which contained H3K27ac peaks and did not overlap with H3K4me3 enriched regions.
DOI: 10.7284/148811
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise NBP0408 using a SeaBird SBE-911+ instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148810
title: GNSS (Global Navigation Satellite System) data collected during research cruise NBP0408 using a Furuno GP-330B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148807
title: Gyrocompass data collected during research cruise NBP0408 using a Yokogawa CMZ700B instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.20055833.v1
title: Supplementary Material for the article entitled “Investigating the influence of different factors on the UX evaluation of a mobile application”

description: In this supplementary material, we detail the method selection process, and provide the raw data and the artifacts we have used in this study to investigate the factors that may influence users’ perceptions about the Pragmatic and Hedonic dimensions of UX <br>
DOI: 10.7284/148808
title: INS (Inertial Navigation System) data collected during research cruise NBP0408 using a Kongsberg Seapath 200 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/148798
title: Multibeam Echosounder data collected during research cruise NBP0409 using a Kongsberg EM122 instrument system onboard the platform RV Nathaniel B. Palmer

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.5281/zenodo.3902663
title: Data of A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths

description: <pre>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data) title = "A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths", journal = "Computer Methods in Applied Mechanics and Engineering", pages = " 113234", year = "2020", issn = "0045-7825", doi = "https://doi.org/10.1016/j.cma.2020.113234", author = "Wu, Ling and Nguyen, Van Dung and Kilingar, Nanda Gopala and Noels, Ludovic"</pre>
description: This project has received funding from the European Unions Horizon 2020 research and innovation programme under grant agreement No 862015 for the project "Multi-scale Optimisation for Additive Manufacturing of fatigue resistant shock-absorbing MetaMaterials (MOAMMM)" of the H2020-EU.1.2.1. -FET Open Programme. N.G. Kilingar was financed by the EnlightenIt project, grant number PDR T.0038.16 of FRS-FNRS. V.D. Nguyen was a Postdoctoral Researcher at the Belgian National Fund for Scientific Research (FNRS)
DOI: 10.5281/zenodo.3902662
title: Data of A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths

description: <pre>Data related to the publication (we would be grateful if you could cite the paper in the case in which you are using the data) title = "A recurrent neural network-accelerated multi-scale model for elasto-plastic heterogeneous materials subjected to random cyclic and non-proportional loading paths", journal = "Computer Methods in Applied Mechanics and Engineering", pages = " 113234", year = "2020", issn = "0045-7825", doi = "https://doi.org/10.1016/j.cma.2020.113234", author = "Wu, Ling and Nguyen, Van Dung and Kilingar, Nanda Gopala and Noels, Ludovic"</pre>
description: This project has received funding from the European Unions Horizon 2020 research and innovation programme under grant agreement No 862015 for the project "Multi-scale Optimisation for Additive Manufacturing of fatigue resistant shock-absorbing MetaMaterials (MOAMMM)" of the H2020-EU.1.2.1. -FET Open Programme. N.G. Kilingar was financed by the EnlightenIt project, grant number PDR T.0038.16 of FRS-FNRS. V.D. Nguyen was a Postdoctoral Researcher at the Belgian National Fund for Scientific Research (FNRS)
DOI: 10.5281/zenodo.6940057
title: GENEA Challenge 2022 subjective evaluation data

description: This zip archive contains user-study response data and associated analyses and analysis results from the GENEA Challenge 2022 (https://youngwoo-yoon.github.io/GENEAchallenge2022/). The code was written by Gustav Eje Henter and is released under a Creative Commons Attribution 4.0 International license. If you use this material, please cite the following paper: Youngwoo Yoon, Pieter Wolfert, Taras Kucherenko, Carla Viegas, Teodor Nikolov, Mihail Tsakov, and Gustav Eje Henter. 2022. The GENEA Challenge 2022: A large evaluation of data-driven co-speech gesture generation. In Proceedings of the ACM International Conference on Multimodal Interaction (ICMI '22). ACM
DOI: 10.5281/zenodo.6939888
title: GENEA Challenge 2022 subjective evaluation data

description: This zip archive contains user-study response data and associated analyses and analysis results from the GENEA Challenge 2022 (https://youngwoo-yoon.github.io/GENEAchallenge2022/). The code was written by Gustav Eje Henter and is released under a Creative Commons Attribution 4.0 International license. If you use this material, please cite the following paper: Youngwoo Yoon, Pieter Wolfert, Taras Kucherenko, Carla Viegas, Teodor Nikolov, Mihail Tsakov, and Gustav Eje Henter. 2022. The GENEA Challenge 2022: A large evaluation of data-driven co-speech gesture generation. In Proceedings of the ACM International Conference on Multimodal Interaction (ICMI '22). ACM
DOI: 10.6084/m9.figshare.20402335.v1
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 2
DOI: 10.6084/m9.figshare.20402335
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 2
DOI: 10.6084/m9.figshare.20402338
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 4
DOI: 10.6084/m9.figshare.20402338.v1
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 4
DOI: 10.6084/m9.figshare.20402341
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 3
DOI: 10.6084/m9.figshare.20402341.v1
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 3
DOI: 10.6084/m9.figshare.20402344
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 1
DOI: 10.6084/m9.figshare.20402344.v1
title: Magma accumulation underneath Laacher See volcano from detrital zircon in modern streams

description: Supplementary Table 1
DOI: 10.6073/pasta/308981fbf34de758b004e05ed971bea9
title: Invasive rodent responses to experimental and natural hurricanes with implications for global climate change

description: Find these data here: https://doi.org/10.5061/dryad.r7sqv9sfz Hurricanes cause dramatic changes to forests by opening the canopy and depositing debris onto the forest floor. How invasive rodent populations respond to hurricanes is not well understood, but shifts in rodent abundance and foraging may result from scarce fruit and seed resources that follow hurricanes. We conducted studies in a wet tropical forest in Puerto Rico to better understand how experimental (Canopy Trimming Experiment) and natural (Hurricane Maria) hurricane effects alter populations of invasive rodents (Rattus rattus [rats] and Mus musculus [mice]) and their foraging behaviors. To monitor rodent populations, we used tracking tunnels (inked and baited cards inside tunnels enabling identification of animal visitors’ footprints) within experimental hurricane plots (arborist trimmed in 2014) and reference plots (closed canopy forest). To assess shifts in rodent foraging, we compared seed removal of two tree species (Guarea guidonia and Prestoea acuminata) between vertebrate-excluded and free-access treatments in the same experimental and reference plots, and did so 3 months before and 9 months after Hurricane Maria (2017). Trail cameras were used to identify animals responsible for seed removal. Rat incidences generated from tracking tunnel surveys indicated that rat populations were not significantly affected by experimental or natural hurricanes. Before Hurricane Maria there were no mice in the forest interior, yet mice were present in forest plots closest to the road after the hurricane, and their forest invasion coincided with increased grass cover resulting from open forest canopy. Seed removal of Guarea and Prestoea across all plots was rat dominated (75%-100% rat-removed) and was significantly less after than before Hurricane Maria. However, following Hurricane Maria, the experimental hurricane treatment plots of 2014 had 3.6 times greater seed removal by invasive rats than did the reference plots, which may have resulted from rats selecting post-hurricane forest patches with greater understory cover for foraging. Invasive rodents are resistant to hurricane disturbance in this forest. Predictions of increased hurricane frequency from expected climate change should result in forest with more frequent periods of grassy understories and mouse presence, as well as with heightened rat foraging for fruit and seed in pre-existing areas of disturbance.