cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.30326530.v1
title: Raw sequencing data and analysis files for the midgut transcriptome and microbiome of Bombyx mori exposed to manganese (Mn)

description: This dataset contains the raw sequencing data and key analysis files supporting the manuscript titled "Integrated analysis of midgut transcriptome and microbiome reveals manganese-induced dysbiosis driver metabolic disruption and developmental toxicity in <i>Bombyx mori</i>." The research investigates the toxicological effects of dietary manganese (Mn) on the economically important insect, <i>Bombyx mori</i> (Liangguang No. 2 strain). Fifth-instar larvae were fed an artificial diet supplemented with different concentrations of manganese sulfate (MnSO₄) for 48 hours, divided into three groups: a control group (MC, 0 g/kg Mn), a medium-dose group (MM, 15 g/kg Mn), and a high-dose group (MH, 30 g/kg Mn). The dataset is comprised of three main components. First, it includes the raw paired-end FASTQ (.fq) files from 16S rRNA gene (V4 region) amplicon sequencing of the midgut microbiome, containing 21 samples with 7 biological replicates per group (named MCS1-7, MMS1-7, and MHS1-7). Second, it contains the Wiggle format (.wig) files from the midgut tissue RNA-sequencing (RNA-seq) analysis, which represent the genome-wide read coverage depth for visualization purposes, consisting of 9 samples with 3 biological replicates per group (named MCT1-3, MMT1-3, and MHT1-3). Third, the dataset includes the reference genome annotation file (SilkDB 3.0) that was used for the alignment and analysis of the RNA-seq data. This collection of data serves as a valuable resource for studying the interactive responses of the host gut transcriptome and gut microbial community under heavy metal stress, contributing to a deeper understanding of the ecotoxicological mechanisms of manganese in <i>Bombyx mori</i>.
DOI: 10.21979/n9/yy8l5o
title: ProxyCLIP: Proxy Attention Improves CLIP for Open-Vocabulary Segmentation

description: Open-vocabulary semantic segmentation requires models to effectively integrate visual representations with open-vocabulary semantic labels. While Contrastive Language-Image Pre-training (CLIP) models shine in recognizing visual concepts from text, they often struggle with segment coherence due to their limited localization ability. In contrast, Vision Foundation Models (VFMs) excel at acquiring spatially consistent local visual representations, yet they fall short in semantic understanding. This paper introduces ProxyCLIP, an innovative framework designed to harmonize the strengths of both CLIP and VFMs, facilitating enhanced open-vocabulary semantic segmentation. ProxyCLIP leverages the spatial feature correspondence from VFMs as a form of proxy attention to augment CLIP, thereby inheriting the VFMs’ robust local consistency and maintaining CLIP’s exceptional zero-shot transfer capacity. We propose an adaptive normalization and masking strategy to get the proxy attention from VFMs, allowing for adaptation across different VFMs. Remarkably, as a training-free approach, ProxyCLIP significantly improves the average mean Intersection over Union (mIoU) across eight benchmarks from 40.3 to 44.4, showcasing its exceptional efficacy in bridging the gap between spatial precision and semantic richness for the open-vocabulary segmentation task.
DOI: 10.5517/cc489xl
title: CCDC 127159: Experimental Crystal Structure Determination

description: Related Article: Lars Eriksson, Ake Pilotti, Roland Stenutz, Goran Wildman|1996|Acta Crystallogr.,Sect.C:Cryst.Struct.Commun.|52|2285|doi:10.1107/S0108270196003411
description: Related Article: Xibing He, Elizabeth Hatcher, Lars Eriksson, Goran Widmalm, Alexander D. MacKerell|2013|J.Phys.Chem.B|117|7546|doi:10.1021/jp403719g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9yttv
title: CCDC 296788: Experimental Crystal Structure Determination

description: Related Article: Jong Chul Byun, Dae Hun Mun, Ki-Min Park|2013|Bull.Korean Chem.Soc.|34|255|doi:10.5012/bkcs.2013.34.1.255
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/cc9ytst
title: CCDC 296787: Experimental Crystal Structure Determination

description: Related Article: Jong Chul Byun, Dae Hun Mun, Ki-Min Park|2013|Bull.Korean Chem.Soc.|34|255|doi:10.5012/bkcs.2013.34.1.255
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnkq52
title: CCDC 612844: Experimental Crystal Structure Determination

description: Related Article: Michael Harmata, , James A. Brackley III, Charles L. Barnes|2006|Tetrahedron Lett.|47|8151|doi:10.1016/j.tetlet.2006.09.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccnkq41
title: CCDC 612843: Experimental Crystal Structure Determination

description: Related Article: Michael Harmata, , James A. Brackley III, Charles L. Barnes|2006|Tetrahedron Lett.|47|8151|doi:10.1016/j.tetlet.2006.09.036
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccpyvn3
title: CCDC 654306: Experimental Crystal Structure Determination

description: Related Article: Ding Yu, Hu Xiaoxia, Sun Xiaoli, Zuo Zhiling|2010|Wuhan Univ.J.Nat.Sci.|15|165|doi:10.1007/s11859-010-0215-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqk60g
title: CCDC 671925: Experimental Crystal Structure Determination

description: Related Article: Nallathambi Sengottuvelan, Seong-Jae Yun, Dae-Young Kim, In-Hye Hwang, Sung Kwon Kang, Yong-Inn Kim|2013|Bull.Korean Chem.Soc.|34|167|doi:10.5012/bkcs.2013.34.1.167
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqsj00
title: CCDC 678962: Experimental Crystal Structure Determination

description: Related Article: Huarong Mu , Rui Zhou, Jing Sun, Chaoguo Yan|2015|Chem.Res.Chin.Univ.|31|925|doi:10.1007/s40242-015-5235-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccqshzy
title: CCDC 678961: Experimental Crystal Structure Determination

description: Related Article: Huarong Mu , Rui Zhou, Jing Sun, Chaoguo Yan|2015|Chem.Res.Chin.Univ.|31|925|doi:10.1007/s40242-015-5235-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccrvmw2
title: CCDC 710795: Experimental Crystal Structure Determination

description: Related Article: Masaichi Saito , Masafumi Sakaguchi , Tomoyuki Tajima , Kazuya Ishimura, Shigeru Nagase|2010|Phosphorus,Sulfur,Silicon,Relat.Elem.|185|1068|doi:10.1080/10426501003773399
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrsdsp
title: CCDC 708653: Experimental Crystal Structure Determination

description: Related Article: Chun-Hong Li, Qiang Wang, Ying-Nan Chi, Xin-Fang Wang, Chang-Wen Hu|2013|Chin.Chem.Lett.|24|578|doi:10.1016/j.cclet.2013.04.032
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccrvmv1
title: CCDC 710794: Experimental Crystal Structure Determination

description: Related Article: Masaichi Saito , Masafumi Sakaguchi , Tomoyuki Tajima , Kazuya Ishimura, Shigeru Nagase|2010|Phosphorus,Sulfur,Silicon,Relat.Elem.|185|1068|doi:10.1080/10426501003773399
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrzlr1
title: CCDC 714604: Experimental Crystal Structure Determination

description: Related Article: Huarong Mu , Rui Zhou, Jing Sun, Chaoguo Yan|2015|Chem.Res.Chin.Univ.|31|925|doi:10.1007/s40242-015-5235-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccrzlq0
title: CCDC 714603: Experimental Crystal Structure Determination

description: Related Article: Huarong Mu , Rui Zhou, Jing Sun, Chaoguo Yan|2015|Chem.Res.Chin.Univ.|31|925|doi:10.1007/s40242-015-5235-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccv101x
title: CCDC 775528: Experimental Crystal Structure Determination

description: Related Article: Gang Liu,  Jing-Chun Han,  Chuang-Chuang Li|2017|Tetrahedron|73|3629|doi:10.1016/j.tet.2017.03.090
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccv1kjy
title: CCDC 776070: Experimental Crystal Structure Determination

description: Related Article: Punita Sharma, Suresh Kumar, Furqan Ali, Sumati Anthal, Vivek K. Gupta, Inshad A. Khan, Surjeet Singh, Payare L. Sangwan, Krishan A. Suri, Bishan D. Gupta, Devinder K. Gupta, Prabhu Dutt, Ram A. Vishwakarma, Naresh K. Satti|2013|Med.Chem.Res.|22|3969|doi:10.1007/s00044-012-0401-7
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvnnsx
title: CCDC 794430: Experimental Crystal Structure Determination

description: Related Article: Fang-Hui Liu, Yu-Bao Song, Li-Juan Zhai,Ming Li|2015|J.Heterocycl.Chem.|52|322|doi:10.1002/jhet.1952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvqmtz
title: CCDC 796322: Experimental Crystal Structure Determination

description: Related Article: Fang-Hui Liu, Yu-Bao Song, Li-Juan Zhai,Ming Li|2015|J.Heterocycl.Chem.|52|322|doi:10.1002/jhet.1952
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvqtzb
title: CCDC 796513: Experimental Crystal Structure Determination

description: Related Article: Tim H. Gehrke, Ulrike Lischke, Karola L. Gasteiger, Sabine Schneider, Simone Arnold, Heiko C. Mueller, David S. Stephenson, Hendrik Zipse, Thomas Carell|2013|Nat.Chem.Biol.|9|455|doi:10.1038/nchembio.1254
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvqty9
title: CCDC 796512: Experimental Crystal Structure Determination

description: Related Article: Tim H. Gehrke, Ulrike Lischke, Karola L. Gasteiger, Sabine Schneider, Simone Arnold, Heiko C. Mueller, David S. Stephenson, Hendrik Zipse, Thomas Carell|2013|Nat.Chem.Biol.|9|455|doi:10.1038/nchembio.1254
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvrw1h
title: CCDC 797507: Experimental Crystal Structure Determination

description: Related Article: Rui-Xia Li, Ping-Liang Li, Yan-Ru Yu, Hong-Li Du, Dong-Cai Guo|2013|Mol.Cryst.Liq.Cryst.|582|122|doi:10.1080/15421406.2013.803825
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccvy520
title: CCDC 802592: Experimental Crystal Structure Determination

description: Related Article: Xibing He, Elizabeth Hatcher, Lars Eriksson, Goran Widmalm, Alexander D. MacKerell|2013|J.Phys.Chem.B|117|7546|doi:10.1021/jp403719g
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccw2sxm
title: CCDC 807051: Experimental Crystal Structure Determination

description: Related Article: Rui-Xia Li, Ping-Liang Li, Yan-Ru Yu, Hong-Li Du, Dong-Cai Guo|2013|Mol.Cryst.Liq.Cryst.|582|122|doi:10.1080/15421406.2013.803825
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.21979/n9/s6ntdj
title: ClearCLIP: Decomposing CLIP Representations for Dense Vision-Language Inference

description: Despite the success of large-scale pretrained Vision-Language Models (VLMs) especially CLIP in various open-vocabulary tasks, their application to semantic segmentation remains challenging, producing noisy segmentation maps with mis-segmented regions. In this paper, we carefully re-investigate the architecture of CLIP, and identify residual connections as the primary source of noise that degrades segmentation quality. With a comparative analysis of statistical properties in the residual connection and the attention output across different pretrained models, we discover that CLIP’s image-text contrastive training paradigm emphasizes global features at the expense of local discriminability, leading to noisy segmentation results. In response, we propose ClearCLIP, a novel approach that decomposes CLIP’s representations to enhance open-vocabulary semantic segmentation. We introduce three simple modifications to the final layer: removing the residual connection, implementing the self-self attention, and discarding the feed-forward network. ClearCLIP consistently generates clearer and more accurate segmentation maps and outperforms existing approaches across multiple benchmarks, affirming the significance of our discoveries.
DOI: 10.5517/ccw3ddr
title: CCDC 807624: Experimental Crystal Structure Determination

description: Related Article: Rui-Xia Li, Ping-Liang Li, Yan-Ru Yu, Hong-Li Du, Dong-Cai Guo|2013|Mol.Cryst.Liq.Cryst.|582|122|doi:10.1080/15421406.2013.803825
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccw4zlk
title: CCDC 809149: Experimental Crystal Structure Determination

description: Related Article: Hui Liu, Qian Sun, Zhengquan Zhou, Juanjuan Liu, Jing Yang, Cunde Wang|2013|Monatsh.Chem.|144|1031|doi:10.1007/s00706-012-0912-4
description: Related Article: Qian Sun, Peiyun Yan, Juanjuan Liu, Xiaotao Zhao, Hui Liu,Cunde Wang|2013|J.Chem.Res.|37|562|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccwnvs4
title: CCDC 824407: Experimental Crystal Structure Determination

description: Related Article: Chuanwen Sun, Tianyan Liu, Li Ding, Yanxia Chen, Wanggeng Zhang|2013|Monatsh.Chem.|144|1003|doi:10.1007/s00706-012-0872-8
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccwsh9f
title: CCDC 827895: Experimental Crystal Structure Determination

description: Related Article: Hyung-Sock Suh, Hung-Low Fernando, Casadonte Dominick, Kim Han-Je, Beom-Sik Kim, Tae-Sun|2012|Bull.Korean Chem.Soc.|33|3133|doi:10.5012/bkcs.2012.33.9.3133
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.ccwsh8d
title: CCDC 827894: Experimental Crystal Structure Determination

description: Related Article: Hyung-Sock Suh, Hung-Low Fernando, Casadonte Dominick, Kim Han-Je, Beom-Sik Kim, Tae-Sun|2012|Bull.Korean Chem.Soc.|33|3133|doi:10.5012/bkcs.2012.33.9.3133
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccwv191
title: CCDC 829383: Experimental Crystal Structure Determination

description: Related Article: Ponnuchamy Pitchaimania, Kong Mun Lob,Kuppanagounder P. Elango|2015|J.Coord.Chem.|68|2167|doi:10.1080/00958972.2015.1037299
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccwwj8j
title: CCDC 830808: Experimental Crystal Structure Determination

description: Related Article: Yuka Amako, Hiroto Hori, Shigeru Arai, Atsushi Nishida|2013|J.Org.Chem.|78|10763|doi:10.1021/jo401758v
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.