cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.723450.v1
title: A Practical Approach to Compensation of Torque Ripple in High-Precision Permanent Magnet Motor Drives

description: Torque pulsation in permanent magnet synchronous motor impairs their performance in critical applications, particularly for direct-drive. A practical approach to compensation of selected torque harmonics is presented. The approach consist of two<br>steps: identification of dominant torque harmonics (the cogging harmonics and the flux linkage harmonics) and using simple iterative search algorithm to tune the compensation algorithm. The angular spectral analysis is used as a optimum criteria. The design of a ripple compensation scheme is based on the fast, robust 2DFC current controller. The overall control scheme and experimental results are also presented. Proposed approach can be used as an automated self-commissioning scheme
DOI: 10.6084/m9.figshare.723377
title: Simultaneous transcriptional profiling of Chlamydia and their host cells by heterogenous RNA-Seq (hRNA-Seq)

description: Bacterial pathogens subvert host cells by using their gene products to manipulate cellular pathways for survival and replication; in turn, host cells respond to invading pathogens through cascading changes in gene expression. Deciphering this complex temporal and spatial interplay is crucial for improved diagnostics and therapeutics. However, the technical limitations of existing methods of expression profiling, such as microarray analysis, significantly reduce their utility for obtaining both bacterial and host expression profiles from infected cells. We developed the heterogeneous RNA-Seq (hRNA-Seq) method to simultaneously capture prokaryotic and eukaryotic expression profiles of bacteria-infected cells. As proof of principle, hRNA-Seq was applied to <em>Chlamydia</em>-infected cells, successfully obtaining the transcriptomes of both <em>Chlamydia</em> and their host cells at 1 and 24 hours post-infection. Substantial transcription was found in the immediate-early period of infection for both <em>Chlamydia</em> and the host cell. Numerous novel host responses were found; in particular we discovered putative positive feedback mechanisms for <em>Chlamydia</em>-induced fibrotic scarring.
DOI: 10.6084/m9.figshare.723332
title: ProtOCL

description: Developing tools to support rapid development & deployment of dialogue games supplementing industry standard design tools with domain specific languages to perform code generation.
DOI: 10.6084/m9.figshare.723332.v1
title: ProtOCL

description: Developing tools to support rapid development & deployment of dialogue games supplementing industry standard design tools with domain specific languages to perform code generation.
DOI: 10.6084/m9.figshare.723321
title: BRCA2 sequence fragments and database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms

description: Fragments of the Drosophila melanogaster BRCA2 sequence of size 50 amino acids. Fragments of the human BRCA2 sequence of size 50 acids. Browsable database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms. The results have been generated by varying two parameters - length of the fragments and the threshold %similarity value for a significant match in a fragment pair. The top level html file is fragal.html.
DOI: 10.6084/m9.figshare.723121
title: Mammlian oocytes: from fully grown to first cell division

description: Illustrates the earliest process of life in mammals. A fully grown oocyte matures into an ovulating oocyte, and upon fertilization, it cleaves into a 2-cell embryo. These samples were collected from Mus Musculus B6D2F1.
DOI: 10.6084/m9.figshare.723121.v1
title: Mammlian oocytes: from fully grown to first cell division

description: Illustrates the earliest process of life in mammals. A fully grown oocyte matures into an ovulating oocyte, and upon fertilization, it cleaves into a 2-cell embryo. These samples were collected from Mus Musculus B6D2F1.
DOI: 10.6084/m9.figshare.723321.v1
title: BRCA2 sequence fragments and database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms

description: Fragments of the Drosophila melanogaster BRCA2 sequence of size 50 amino acids. Fragments of the human BRCA2 sequence of size 50 acids. Browsable database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms. The results have been generated by varying two parameters - length of the fragments and the threshold %similarity value for a significant match in a fragment pair. The top level html file is fragal.html.
DOI: 10.6084/m9.figshare.723330.v1
title: ProtOCL Lite

description: An overview of the ProtOCL system as presented at CMNA. This is the core of the system for generating a dialogue game framework and API from an object diagram and OCL annotations.
DOI: 10.6084/m9.figshare.723321.v2
title: BRCA2 sequence fragments and database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms

description: Fragments of the Drosophila melanogaster BRCA2 sequence of size 50 amino acids. Fragments of the human BRCA2 sequence of size 50 acids. UPDATED DATABASE. Updated browsable database of the output of FRAGAL for BRCA2, HAT and two new repeats - BIR and TPR for different organisms. The results have been generated by varying two parameters - length of the fragments and the threshold %similarity value for a significant match in a fragment pair. The top level html file is fragal.html. Browsable database of the output of FRAGAL for BRCA2 and HAT repeats for different organisms. The results have been generated by varying two parameters - length of the fragments and the threshold %similarity value for a significant match in a fragment pair. The top level html file is fragal.html.
DOI: 10.6084/m9.figshare.722968.v1
title: Rubin, M. (2012). Social class differences in social integration among students in higher education: A meta-analysis and recommendations for future research. Journal of Diversity in Higher Education, 5, 22-38. doi: 10.1037/a0026162

description: A meta-analysis of 35 studies found that social class (socioeconomic status) is related to social integration among students in higher education: Working-class students are less integrated than middle-class students.
DOI: 10.6084/m9.figshare.722952.v1
title: Cumulative sequenced genomes

description: Cumulative counts of sequenced genomes
DOI: 10.6084/m9.figshare.722940
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722940.v1
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722952.v2
title: Cumulative sequenced genomes

description: Cumulative counts of sequenced genomes
DOI: 10.6084/m9.figshare.722928
title: Original data collected from interviews with homeless participants

description: The original data collected from the Brief Pain Inventory (BPI), Short Form McGill (SF-McGill) and Leeds Assessment of Neuropathic Symptoms and Signs (LANSS) questionnaires. There is also data on the intake of prescribed and unprescribed medications, alcohol consumption, and the reasons for homelessness.<br>This questionnaire was designed by the study team to capture demographic data that was not covered by the Brief Pain Inventory (BPI), Short Form McGill Pain (SF-McGill) or Leeds Assessment of Neuropathic Symptoms and Signs (LANSS) questionnaires used in the study.
DOI: 10.6084/m9.figshare.722933
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722949.v1
title: Using Python to Study Rotational Velocities of Hot Stars

description: Poster to Scipy confecrence of 2013.
DOI: 10.6084/m9.figshare.722933.v1
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722921
title: Geometric Morphometrics Workshop

description: Materials accompanying a Geometric Morphometric introductary workshop given June 14th 2013 at the Ecology and Evolution department at Trinity College, Dublin.
DOI: 10.6084/m9.figshare.722922
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722928.v1
title: Original data collected from interviews with homeless participants

description: The original data collected from the Brief Pain Inventory (BPI), Short Form McGill (SF-McGill) and Leeds Assessment of Neuropathic Symptoms and Signs (LANSS) questionnaires. There is also data on the intake of prescribed and unprescribed medications, alcohol consumption, and the reasons for homelessness.<br>This questionnaire was designed by the study team to capture demographic data that was not covered by the Brief Pain Inventory (BPI), Short Form McGill Pain (SF-McGill) or Leeds Assessment of Neuropathic Symptoms and Signs (LANSS) questionnaires used in the study.
DOI: 10.6084/m9.figshare.722922.v1
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.722896
title: HOWTO do a minimal Cygwin installation

description: A short HOWTO on installing Cygwin, a UNIX-like environment, on a Windows machine.
DOI: 10.6084/m9.figshare.722915.v1
title: Meta Meta Meta

description: Slides for the #MIILS2013 course, outlining three Figshare data sets from PLOS One to be converted into RDF.
DOI: 10.6084/m9.figshare.722713
title: Systematically identify phylogenetic markers at different taxonomic levels for bacteria and archaea

description: For a variety of kinds of studies it is useful to have a collection of so-called “phylogenetic marker” genes for the taxa of interest. Such genes would ideally be found in most or all of the taxa under study and phylogenetic trees of them would produce reliable and robust phylogenetic results. Related to this, such marker genes would ideally be resistant to issues that make phylogenetic results for a gene family not accurately reflect species history. Examples of such issues include difficulty in generating alignments, extensive lateral gene transfer, convergent evolution, and highly variable rates of evolution between taxa or over time. We are interested in phylogenetic studies of bacteria and archaea and describe here an extensive analysis of potential phylogenetic marker genes in these taxa by analyzing available complete genome sequences. We describe here a protocol for the automatic identifications of phylogenetic markers at different taxonomic levels. The protocol uses rapid searching and clustering algorithms to generate protein families for a selection of genomes. Phylogenetic trees are then built for the families and clades from the trees are automatically sampled and evaluated for features that make them potentially useful “marker” genes for both phylogenetic analysis (e.g., universality across genomes of interest) and ecological studies (e.g. evenness in copy number). Potential marker families are then further assessed using multiple comparative and phylogenetic analyses. Using this approach, we have identified 114 phylogenetic markers for “all bacteria” (expanding on previous collections that are of ~ 30 in size) including 40 markers that cover bacteria and archaea simultaneously. In addition, we have identified 100s-1000s of markers for individual phyla of bacteria that should allow much more detailed automated phylogenetic analyses of these groups than possible previously. ###############<br>Markers at Different Taxonomic Level (hmm, amino acid sequences and alignments) actinobacteria.tgz<br>alphaproteobacteria.tgz<br>archaea.tgz<br>bacteria_and_archaea.tgz<br>bacteria.tgz<br>bacteroidetes.tgz<br>betaproteobacteria.tgz<br>chlamydiae.tgz<br>chloroflexi.tgz<br>cyanobacteria.tgz<br>deinococcus-thermus.tgz<br>deltaproteobacteria.tgz<br>epsilonproteobacteria.tgz<br>firmicutes.tgz<br>gammaproteobacteria.tgz<br>spirochaetes.tgz<br>thermotogae.tgz #################<br>Super-family and Sub-family relationships for the markers (No.1-114, other identification numbers<br>bare no relationship between the taxonomic level specific markers) super_sub_family.xls ################<br>Universality,Evenness and Monophyletic Value Measurements Trees: tree.tgz<br>Measurement for Figure 2 and 3: Figure2and3.tgz<br>Perl scripts: scripts.tgz
DOI: 10.6084/m9.figshare.722897.v1
title: Biodiversity Informatics at the Natural History Museum

description: Overview of the NHM Informatics Intiative based around the data life cycle.
DOI: 10.6084/m9.figshare.720334
title: Italy: The Eurozone Crisis

description: This is a brief article of my views of Italy and it's current economic outlook in the short run. I look at this from the perspective of starting a new business in the country and its viability.
DOI: 10.6084/m9.figshare.720335
title: Organizational Turnarounds - Leadership

description: This paper describes a style of leadership that I have found to be instrumental in turning an organization around. It is based primarily on one's ability to build and sustain relationships.
DOI: 10.6084/m9.figshare.720334.v1
title: Italy: The Eurozone Crisis

description: This is a brief article of my views of Italy and it's current economic outlook in the short run. I look at this from the perspective of starting a new business in the country and its viability.
DOI: 10.6084/m9.figshare.719784
title: Qualifying Exam

description: This dataset is the product of my qualifying exams. The questions cover a range of topics including epigenetics and the host pathogen relationship, reproductive biology of oysters, estrogen signalling and understanding effects of various enviromental stresses on shellfish. This document was prepared over (a nervewracking) 5 days, includes personal opinions, and is unedited - so pardon the typos.
DOI: 10.6084/m9.figshare.722894.v2
title: ITA Approccio semiserio n. zerØ ad una teoria sociopolitica per la costituzione di una nuova “Comunità”, accresciuta sistematicamente da principi genetici etici

description: <strong>[DRAFT #Ø].</strong> The present discussion for the establishment of a so called "New Community” is architectural prototyped on the political writings published between 24~25 May and 13 June 2005. Among the others, bio-ethical principles are used. They transfer the typical elements of biological ecosystems, the exaptation pjenomena, and biological-genetic evolutionary mechanisms and strategies, to the scope of social networks and human organizations.<br>In the present review, the original expression of <em>"Communism"</em> has been replaced by the new word <em>"Community”</em>. Although the new<em> "Community"</em> concept yet includes the principle of fairness, this paper sets out only general rules and laws, without identifying practical requirements.
DOI: 10.6084/m9.figshare.722894.v3
title: ITA Approccio semiserio n. zerØ ad una teoria sociopolitica per la costituzione di una nuova “Comunità”, accresciuta da principi genetici sistematicamente etici

description: <strong>[DRAFT #Ø].</strong> The present discussion for the establishment of a so called "New Community” is architectural prototyped on the political writings published between 24~25 May and 13 June 2005. Among the others, bio-ethical principles are used. They transfer the typical elements of biological ecosystems, the exaptation pjenomena, and biological-genetic evolutionary mechanisms and strategies, to the scope of social networks and human organizations.<br>In the present review, the original expression of <em>"Communism"</em> has been replaced by the new word <em>"Community”</em>. Although the new<em> "Community"</em> concept yet includes the principle of fairness, this paper sets out only general rules and laws, without identifying practical requirements.
DOI: 10.6084/m9.figshare.719779.v1
title: Evaluating and using general theories in ecology

description: Poster on our research evaluating and the Maximum Entropy Theory of Ecology and using to predict diversity patterns. To be presented at the Israeli-American Kavli Frontiers of Science symposium on June 17th, 2013.
DOI: 10.6084/m9.figshare.719100
title: From green to red: horizontal gene transfer of phycoerythrin gene cluster between Planktothrix strains.

description: This data is part of a published article: From green to red: horizontal gene transfer of phycoerythrin gene cluster between Planktothrix strains. .fasta file of 217.5 kb long alignment of 200 randomly selected core genes from eight Planktothrix genomes (Cyanobacteria).
DOI: 10.6084/m9.figshare.719275
title: Gaussian Job Archive for C26H22N2O4Pd2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.719280
title: Thermal analysis biomass thermogravimetric mass spectroscopic data

description: Thermogravimetric and mass spectroscopic data for biomass thermolysis, pine, maize samples
DOI: 10.6084/m9.figshare.719275.v1
title: Gaussian Job Archive for C26H22N2O4Pd2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.719280.v1
title: Thermal analysis biomass thermogravimetric mass spectroscopic data

description: Thermogravimetric and mass spectroscopic data for biomass thermolysis, pine, maize samples
DOI: 10.6084/m9.figshare.718175
title: AMPHORA software for automated phylogenomic analysis

description: AMPHORA is an Automated Phylogenomic Inference Pipeline for bacterial sequences. From a given a set of protein sequences, it automatically identifies 31 phylogenetic marker genes. It then generates high-quality multiple sequence alignments for these genes and make tree-based phylotype assignments.
DOI: 10.6084/m9.figshare.718160
title: Inclusion of a near-complete fossil record reveals speciation-related molecular evolution

description: All trees, alignments, BEAST inputs and data frame.
DOI: 10.6084/m9.figshare.718163
title: Gaussian Job Archive for C11H13(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.718555.v1
title: Neonicotinoid Use and the Declining Bee Population

description: Combined research as well as studies that could prove the declining honey bee population is due to the use of pesticides.
DOI: 10.6084/m9.figshare.722894.v7
title: Aurosphere Number zerØ, a theoretical semi-serious approach to a socio-political constitution of a new "Community", increased with genetic principles of systematic Ethics. — [DRAFT]

description: <strong>[DRAFT #Ø].</strong> The present theoretical discussion for the establishment of a so called <em>"New Community in a New Town”</em> [Aurosphere] was architectural prototyped on the political writings published between 24~25 May and 13 June 2005. Among the others, bio-ethical principles are used. They transfer the typical elements of biological ecosystems, the exaptation phenomena, and biological-genetic evolutionary mechanisms and strategies, to the scope of new social networks and human organizations. In today’s review, the original expression of "<em>Communism</em>" has been replaced by the new word "<em>Community</em>”. Although the new "<em>Community</em>" concept yet includes the principle of fairness, this theoretical paper sets out only general rules and laws, without identifying practical requirements, to be dealt with in a separate document. In the present review, the original expression of <em>"Communism"</em> has been replaced by the new word <em>"Community”</em>. Although the new<em> "Community"</em> concept yet includes the principle of fairness, this paper sets out only general rules and laws, without identifying practical requirements.
DOI: 10.6084/m9.figshare.718154
title: Gaussian Job Archive for C26H22N2O4Pd

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.718155
title: Complex Processes and 3D Printing SourceCode on June 13 2013

description: The source code for Scuplexity project as of June, 2013. For a more recent build please find the code repository at https://github.com/doreiss/3D_Print.
DOI: 10.6084/m9.figshare.718163.v1
title: Gaussian Job Archive for C11H13(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.718154.v1
title: Gaussian Job Archive for C26H22N2O4Pd

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.718160.v2
title: Inclusion of a near-complete fossil record reveals speciation-related molecular evolution

description: All trees, alignments, BEAST inputs and data frame.
DOI: 10.6084/m9.figshare.718160.v1
title: Inclusion of a near-complete fossil record reveals speciation-related molecular evolution

description: All trees, alignments, BEAST inputs and data frame.
DOI: 10.6084/m9.figshare.717223
title: Compost Bin Software and Data Sets

description: Software and data sets for CompostBin method for binning metagenomic data
DOI: 10.6084/m9.figshare.717203
title: Human respiratory syncytial virus genomes aligned

description: <pre>Human respiratory syncytial virus complete genomes plus a bovine virus for outgroup.</pre>
DOI: 10.6084/m9.figshare.717205
title: Respiratory Syncytial Virus

description: A selection of genomes of Respiratory Syncytial Viruses and a phylogenetic analysis of them
DOI: 10.6084/m9.figshare.718143.v1
title: Phylogenetic tree using the matK gen of some plants used as food or beverages in prehispanic Mexico.

description: Maiz - Zea mays Frijol - Phaseolus vulgaris<br>Calabaza - Cucurbita pepo<br>Jícama - Pachyrhizus erosus<br>Aguacate - Persea americana<br>Cacao - Theobroma cacao<br>Jitomate - Solanum lycopersicum<br>Tomate - Physalis ixocarpa maguey pulquero - Agave salmiana<br>maguey mezcalero - Agave potatorum<br>agave azul - Agave tequilana<br>maguey espadín - Agave angustifolia Vainilla - Vanilla planifolia<br>Achiote - Bixa orellana<br>Chile - Capsicum annuum Chicozapote - Manilkara zapota
DOI: 10.6084/m9.figshare.717205.v1
title: Respiratory Syncytial Virus

description: A selection of genomes of Respiratory Syncytial Viruses and a phylogenetic analysis of them
DOI: 10.6084/m9.figshare.717191
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.717203.v1
title: Human respiratory syncytial virus genomes aligned

description: <pre>Human respiratory syncytial virus complete genomes plus a bovine virus for outgroup.</pre>
DOI: 10.6084/m9.figshare.717190
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.717191.v1
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.717183
title: Gaussian Job Archive for C6H7(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.