cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4282634.v1
title: Portal Rodent Trapping Forecasts for December 2016

description: This is a forecast made for the upcoming December 2 - 4 rodent trapping at the long-term Portal research site in southern Arizona. Four models were used to achieve forecasts with 90% prediction intervals. There are two forecast tables. One is for the site as a whole (total means across all plots, all treatment types), named "All". The other is for the 4 long-term Control plots only ("Controls").<br>Two naive models using the defaults in the forecast package in R were used to create forecasts for the total granivore captures (species="Total") over the next 12 trapping periods, the first being tomorrow.<br>The "Forecast" modelforecast(abundances$total,h=12,level=0.95,BoxCox.lambda(0),allow.multiplicative.trend=T)<br>The "AutoArima" modelforecast(auto.arima(abundances$total,lambda = 0),h=12,level=0.95,fan=T)<br>Species-level predictions, as well as another total captures prediction, were made using the tscount package in R.<br>The "NegBinom Time Series" model, by species (species codes are the first letter of the genus and species)<br>model=tsglm(abundances[[s]],model=list(past_obs=1,past_mean=11),distr="nbinom")<br>predict(model,12,level=0.9) <br>The "Poisson Environmental" model, by species (species codes are the first letter of the genus and species), using monthly minimum temperature, maximum tempurature, mean temperature, total precipitation from our on-site weather station, and NDVI from a compiled LANDSAT MODIS estimate. Model selection was based on AIC and performed for each species.<br>model=tsglm(abundances[[s]],model=list(past_obs=1,past_mean=11),distr="poisson",xreg=weather)<br>predict(model,12,level=0.9,newdata=weatherforecast)
DOI: 10.6084/m9.figshare.4282637.v1
title: Raw Sci Rep data for figshare.xlsx

description: Data for the paper titled "Rising temperatures may drive fishing-induced selection of low-performance phenotypes".<br>Individual values for metabolic parameters, exercise performance scores and recovery durations in different thermal treatment groups.
DOI: 10.6084/m9.figshare.4282637.v2
title: Raw data for 'Rising temperatures may drive fishing-induced selection of low-performance phenotypes'

description: Data for the paper titled "Rising temperatures may drive fishing-induced selection of low-performance phenotypes".<br>Individual values for metabolic parameters, exercise performance scores and recovery durations in different thermal treatment groups.
DOI: 10.6084/m9.figshare.4276730
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_100Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276727
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_1Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276730.v1
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_100Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276724
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_1Acres_10Fe
DOI: 10.6084/m9.figshare.4276727.v1
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_1Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276724.v1
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_1Acres_10Fe
DOI: 10.6084/m9.figshare.4276718
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_10Acres_10Fe
DOI: 10.6084/m9.figshare.4276721
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_10Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276721.v1
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_10Acres_0.1Fe
DOI: 10.6084/m9.figshare.4276718.v1
title: Geochemical prediction of arsenic attenuation from infiltrated heap leach drainage, Daisy Mine, Nevada

description: Daisy model_0.045gpm_JD_10Acres_10Fe
DOI: 10.6084/m9.figshare.4276676
title: The Look Over Your Shoulder

description: Two data sets and a corresponding manual for the following project: <br>"Does the mere presence of another person curb unethical behavior? A growing literature on behavioral ethics has repeatedly stressed the important role that ‘others’ play for the emergence of moral and legal transgressions, for example through norms, reputation and social control. Yet, in the clear majority of studies participants made decisions in isolation as no other person was physically present. To understand how the presence of another person influences an individual’s willingness to breach ethical norms, we conducted two experiments in which a second person was present with the participant in the lab. In Study 1, we also investigated the quality of the relationship towards that second person, either being a stranger vs. a well-known friend. In Study 2, we examined the effects of whether the other person had a stake in the decision of the participant: benefitting from cheating vs. not. Using two different paradigms to study unethical behavior, we obtain two main results: first, the mere presence of another person curbs levels of corruption and cheating, and second, neither the relationship towards that other nor the outcome structure matters for this effect to occur. "<br><br>
DOI: 10.6084/m9.figshare.4276676.v1
title: The Look Over Your Shoulder

description: Two data sets and a corresponding manual for the following project: <br>"Does the mere presence of another person curb unethical behavior? A growing literature on behavioral ethics has repeatedly stressed the important role that ‘others’ play for the emergence of moral and legal transgressions, for example through norms, reputation and social control. Yet, in the clear majority of studies participants made decisions in isolation as no other person was physically present. To understand how the presence of another person influences an individual’s willingness to breach ethical norms, we conducted two experiments in which a second person was present with the participant in the lab. In Study 1, we also investigated the quality of the relationship towards that second person, either being a stranger vs. a well-known friend. In Study 2, we examined the effects of whether the other person had a stake in the decision of the participant: benefitting from cheating vs. not. Using two different paradigms to study unethical behavior, we obtain two main results: first, the mere presence of another person curbs levels of corruption and cheating, and second, neither the relationship towards that other nor the outcome structure matters for this effect to occur. "<br><br>
DOI: 10.6084/m9.figshare.4276607.v1
title: Rasheda data files

description: These are Stata data files
DOI: 10.6084/m9.figshare.4276565
title: Duration Human Tongue Clicks

description: This dataset contains duration data of human tongue clicks
DOI: 10.6084/m9.figshare.4276565.v1
title: Duration Human Tongue Clicks

description: This dataset contains duration data of human tongue clicks
DOI: 10.6084/m9.figshare.4276544
title: Spectra Human Tongue Clicks

description: This dataset contains spectral data of six human tongue clicks that are used for echolocation.
DOI: 10.6084/m9.figshare.4276544.v1
title: Spectra Human Tongue Clicks

description: This dataset contains spectral data of six human tongue clicks that are used for echolocation.
DOI: 10.6084/m9.figshare.4276523
title: Chess Database

description: The file all.pgn.zip contains the raw data, 3.5 million chess games in PGN (portable game notation) format, played from 1783 to 2009. The file all_with_filtered_anotations.zip contains 1.4 million games resulting of the filtering of the raw data, games with corrupt or missing data, in txt format. The filtered data was used for the data analysis in the paper 'A study of memory effects in a chess database' (PLoS One). For further information check the references below.
DOI: 10.6084/m9.figshare.4276454
title: PowerPoint Slides for: The Impact of Health Care Appointment Non-Adherence on Graft Outcomes in Kidney Transplantation

description: <b><i>Background:</i></b> Non-adherence to medication is a well-studied and known cause of late allograft loss, but it is difficult to measure and prospectively monitor. The aim of this study was to assess if appointment non-adherence was correlated with medication non-adherence and a predictor of graft outcomes. <b><i>Methods:</i></b> This was a longitudinal cohort study that used the National United States Renal Data System and veterans affairs health records data with time-to-event analyses conducted to assess the impact on graft and patient survival. <b><i>Results:</i></b> The number of transplants that were included in the analysis was 4,646 (3,656 with complete records); 14.6% of patients had an appointment no show rate of ≥12% (non-adherence). Appointment and medication non-adherence were highly correlated and both were significant independent predictors of outcomes. Those with appointment non-adherence had 1.5 times the risk of acute rejection (22.0 vs. 14.7%, p &lt; 0.0001) and a 65% higher risk of graft loss (adjusted hazards ratio (aHR) 1.65, 95% CI 1.38-1.97, p &lt; 0.0001). There was a significant interaction between appointment and medication non-adherence; those with appointment and medication non-adherence were at very high risk of graft loss (aHR 4.18, 95% CI 3.39-5.15, p &lt; 0.0001), compared to those with only appointment non-adherence (aHR 1.39, 95% CI 0.97-2.01, p = 0.0766) or only medication non-adherence (aHR 2.44, 95% CI 2.11-2.81, p &lt; 0.0001). <b><i>Conclusion:</i></b> These results demonstrate that non-adherence to health care appointments is a significant and independent risk factor for graft loss.
DOI: 10.6084/m9.figshare.4276445
title: PowerPoint Slides for: Simple Cysts in Donor Kidney Contribute to Reduced Allograft Function

description: <b><i>Background:</i></b> Simple renal cysts may be an early marker of renal disease. We investigated whether simple cysts in donor kidney are associated with the decline of allograft function in living donor kidney transplantation. <b><i>Methods:</i></b> We retrospectively reviewed records of donors and recipients from 716 living donor kidney transplants performed between April 2007 and April 2015 in our hospital. Ninety-one donors with renal cysts and 64 recipients with cysts in donor kidney were noted. We compared these 64 cases to 128 no cyst-bearing controls matched for the donor gender, recipient gender, donor baseline serum creatinine (sCr), donor/recipient body surface area ratio, donor age, recipient age and the date of kidney transplantation in turn. <b><i>Results:</i></b> The presence of cysts was interrelated with age, gender and renal function independently in donors. Pathological findings of time-zero biopsy revealed that donor kidney harboring cysts existed more glomerular sclerosis compared with no cyst-bearing controls (p = 0.040). The estimating glomerular filtration rate levels of recipients were 80.82 ± 26.61 vs. 88.21 ± 23.12, 66.95 ± 17.42 vs. 72.15 ± 16.42 and 60.92 ± 22.17 vs. 68.72 ± 14.43 ml/min· 1.73 m<sup>2</sup> in cyst-bearing and no cyst-bearing group on day 7, month 6 and year 5, respectively, after surgery (p &lt; 0.05). The mean sCr were 112.14 ± 48.32 vs. 98.75 ± 29.71 and 126.28 ± 42.32 vs. 115.05 ± 26.35 μmol/l on the 7th day and a half year after transplant, respectively (p &lt; 0.05). The 2 groups did not significantly differ in terms of the other characteristics. <b><i>Conclusion:</i></b> Simple cysts in donor kidney can influence the early and long-term allograft function. In living donor transplantation, kidney presenting cysts should be considered carefully at the time of donor selection.
DOI: 10.6084/m9.figshare.4276454.v1
title: PowerPoint Slides for: The Impact of Health Care Appointment Non-Adherence on Graft Outcomes in Kidney Transplantation

description: <b><i>Background:</i></b> Non-adherence to medication is a well-studied and known cause of late allograft loss, but it is difficult to measure and prospectively monitor. The aim of this study was to assess if appointment non-adherence was correlated with medication non-adherence and a predictor of graft outcomes. <b><i>Methods:</i></b> This was a longitudinal cohort study that used the National United States Renal Data System and veterans affairs health records data with time-to-event analyses conducted to assess the impact on graft and patient survival. <b><i>Results:</i></b> The number of transplants that were included in the analysis was 4,646 (3,656 with complete records); 14.6% of patients had an appointment no show rate of ≥12% (non-adherence). Appointment and medication non-adherence were highly correlated and both were significant independent predictors of outcomes. Those with appointment non-adherence had 1.5 times the risk of acute rejection (22.0 vs. 14.7%, p &lt; 0.0001) and a 65% higher risk of graft loss (adjusted hazards ratio (aHR) 1.65, 95% CI 1.38-1.97, p &lt; 0.0001). There was a significant interaction between appointment and medication non-adherence; those with appointment and medication non-adherence were at very high risk of graft loss (aHR 4.18, 95% CI 3.39-5.15, p &lt; 0.0001), compared to those with only appointment non-adherence (aHR 1.39, 95% CI 0.97-2.01, p = 0.0766) or only medication non-adherence (aHR 2.44, 95% CI 2.11-2.81, p &lt; 0.0001). <b><i>Conclusion:</i></b> These results demonstrate that non-adherence to health care appointments is a significant and independent risk factor for graft loss.
DOI: 10.6084/m9.figshare.4276427
title: Supplementary Material for: Quantitative Analysis of Thyroid Hormone Metabolites in Cell Culture Samples Using LC-MS/MS

description: A liquid-liquid extraction and liquid chromatography-electrospray ionization tandem mass spectrometry (LC-MS/MS) method to determine iodothyronines and thyronamines (TAM) from cell culture media was developed. Thyroid hormones (TH) are metabolized by sequential deiodination to eventually yield thyronine (T₀), but can also be decarboxylated, resulting in TAM. The method presented here for extraction of DMEM/F12 cell culture media is a fundamental procedure for a precise determination of 9 TH and 6 TAM from a single LC run. Analytes and internal standards (IS) were extracted from DMEM/F12 (w/o phenol red) by liquid-liquid extraction using isopropanol-TBME (30:70 v/v). Measurement of TH and TAM was performed during a 10-min run time using <sup>13</sup>C<sub>6</sub>-T<sub>4</sub>, <sup>13</sup>C<sub>6</sub>-T<sub>3</sub>, <sup>13</sup>C<sub>6</sub>-rT<sub>3</sub>, <sup>13</sup>C<sub>6</sub>-3,3′T<sub>2</sub> and <sup>2</sup>H<sub>4</sub>-T<sub>1</sub>AM as IS. Calibration curves covered 11 calibrators measured as triplicates each for the analysis of the 9 TH and 6 TAM metabolites, and the 5 IS were linear and reproducible in the range of 0.12-120 nM (R<sup>2</sup> 0.991-0.999) for all calibrators. The lower limit of quantification was 0.078-0.234 nM. Method validation and robustness were demonstrated by the analysis of precision, accuracy, process efficiency, matrix effects and recoveries, as well as intra- and interassay stability. These parameters were investigated for high, middle and low concentrations of quality controls of all 9 TH and 6 TAM metabolites. This validated, sensitive and interaction-free LC-MS/MS method allows rapid analysis and accurate determination of TH and TAM from DMEM/F12 (w/o phenol red) conditioned media and seems to be easily transferable and applied to commonly used buffers and cell culture media.
DOI: 10.6084/m9.figshare.4276415
title: RAW DATA from Variability in individual activity bursts improves ant foraging success

description: Using experimental and computational methods, we study the role of behavioural variability in activity bursts (or temporal activity patterns) for individual and collective regulation of foraging in <i>A. senilis</i> ants. First, foraging experiments were carried out under special conditions (low densities of ants and food and absence of external cues or stimuli) where individual-based strategies are most prevalent. By using marked individuals and recording all foraging trajectories, we were then able to precisely quantify behavioural variability among individuals. Our main conclusions are that (i) variability of ant trajectories (turning angles, speed, etc.) is low compared with variability of temporal activity profiles, and (ii) this variability seems to be driven by plasticity of individual behavioural through time, rather than the presence of fixed behavioural stereotypes or specialists within the group. The statistical measures obtained from these experimental foraging patterns are then used to build a general agent-based model (ABM) which includes the most relevant properties of ant foraging under natural conditions, including recruitment through pheromone communication. Using the ABM, we are able to provide computational evidence that the characteristics of individual variability observed in our experiments can provide a functional advantage (in terms of foraging success) to the group; thus, we propose the biological basis underpinning our observations. Altogether, our study reveals the potential utility of experiments under simplified (laboratory) conditions for understanding information-gathering in biological systems.
DOI: 10.6084/m9.figshare.4276409
title: Data Supplement from Differential cell-matrix responses in hypoxia-stimulated aortic versus mitral valves

description: All data used in figures
DOI: 10.6084/m9.figshare.4276412
title: Experimental results from Experimental and numerical study of drill bit drop tests on Kuru granite

description: This paper presents an experimental and numerical study of Kuru grey granite impacted with a sevenbuttons drill bit mounted on an instrumented drop test machine. The force versus displacement curves during the impact, so-called bit-rock interaction (BRI) curves, were obtained using strain gauge measurements for two levels of impact energy. Moreover, the volume of removed rock after each drop test was evaluated by stereo-lithography (three-dimensional surface reconstruction). A modified version of the Holmquist-Johnson-Cook (MHJC) material model was calibrated using Kuru granite test results available from the literature. Numerical simulations of the single drop tests were carried out using the MHJC model available in the LS-DYNA explicit finite-element solver. The influence of the impact energy and additional confining pressure on the BRI curves and the volume of the removed rock is discussed. In addition, the influence of the rock surface shape before impact was evaluated using two different mesh geometries: a flat surface and a hyperbolic surface. The experimental and numerical results are compared and discussed in terms of drilling efficiency through the mechanical specific energy.This article is part of the themed issue ‘Experimental testing and modelling of brittlematerials at high strain rates’.
DOI: 10.6084/m9.figshare.4276409.v1
title: Data Supplement from Differential cell-matrix responses in hypoxia-stimulated aortic versus mitral valves

description: All data used in figures
DOI: 10.6084/m9.figshare.4276412.v1
title: Experimental results from Experimental and numerical study of drill bit drop tests on Kuru granite

description: This paper presents an experimental and numerical study of Kuru grey granite impacted with a sevenbuttons drill bit mounted on an instrumented drop test machine. The force versus displacement curves during the impact, so-called bit-rock interaction (BRI) curves, were obtained using strain gauge measurements for two levels of impact energy. Moreover, the volume of removed rock after each drop test was evaluated by stereo-lithography (three-dimensional surface reconstruction). A modified version of the Holmquist-Johnson-Cook (MHJC) material model was calibrated using Kuru granite test results available from the literature. Numerical simulations of the single drop tests were carried out using the MHJC model available in the LS-DYNA explicit finite-element solver. The influence of the impact energy and additional confining pressure on the BRI curves and the volume of the removed rock is discussed. In addition, the influence of the rock surface shape before impact was evaluated using two different mesh geometries: a flat surface and a hyperbolic surface. The experimental and numerical results are compared and discussed in terms of drilling efficiency through the mechanical specific energy.This article is part of the themed issue ‘Experimental testing and modelling of brittlematerials at high strain rates’.
DOI: 10.6084/m9.figshare.4276382
title: No-reference Anisotroptic Quality Index

description: This Matlab toolbox implements the no-reference Anisotropic Quality Index (AQI). Such measure is based on the generalized Rényi entropy applied in a spatial/spatial-frequency framework. Namely, the AQI is based on determining the variance of the entropy of a given image over a set of predefined directions. The suitability of the AQI measure has been statistically endorsed through the application of standard benchmarking parameters that showed good match with the Mean Opinion Scores (MOS) or Differential Mean Opinion Scores (DMOS) provided by the conventional image databases.
DOI: 10.6084/m9.figshare.4276376
title: Reliability of Inertial Sensors in the Assessment of Patients with Vestibular Disorders – a feasibility study

description: The data set contains values of parameters from 27 participants and falls data collected from TUG and Sway test.
DOI: 10.6084/m9.figshare.4276382.v1
title: No-reference Anisotroptic Quality Index

description: This Matlab toolbox implements the no-reference Anisotropic Quality Index (AQI). Such measure is based on the generalized Rényi entropy applied in a spatial/spatial-frequency framework. Namely, the AQI is based on determining the variance of the entropy of a given image over a set of predefined directions. The suitability of the AQI measure has been statistically endorsed through the application of standard benchmarking parameters that showed good match with the Mean Opinion Scores (MOS) or Differential Mean Opinion Scores (DMOS) provided by the conventional image databases.
DOI: 10.6084/m9.figshare.4276376.v2
title: Reliability of Inertial Sensors in the Assessment of Patients with Vestibular Disorders – a feasibility study

description: The data set contains values of parameters from 27 participants and falls data collected from TUG and Sway test.
DOI: 10.6084/m9.figshare.4276370
title: Promotional posters for research data exhibition

description: Promotional material for exhibition. Authors: Jackie Clark; Stuart MacDonald; Rocio von Jungenfeld; Pauline Ward<br>
DOI: 10.6084/m9.figshare.4276370.v1
title: Promotional posters for research data exhibition

description: Promotional material for exhibition. Authors: Jackie Clark; Stuart MacDonald; Rocio von Jungenfeld; Pauline Ward<br>
DOI: 10.6084/m9.figshare.4276376.v1
title: FigSharedataOPAL paper.xlsx

description: The data set contains values of parameters from 27 participants and falls data collected from TUG and Sway test.