cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14100259
title: Additional file 1 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 1: Table S1. The detailed information of 3387 metabolites with annotations.
DOI: 10.6084/m9.figshare.14100259.v1
title: Additional file 1 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 1: Table S1. The detailed information of 3387 metabolites with annotations.
DOI: 10.6084/m9.figshare.14100268
title: Additional file 4 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 4: Table S2. Detailed information of the transcriptomes.
DOI: 10.6084/m9.figshare.14100268.v1
title: Additional file 4 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 4: Table S2. Detailed information of the transcriptomes.
DOI: 10.6084/m9.figshare.14100274.v1
title: Additional file 6 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 6: Table S3. GO categories of all the DEGs between T. yunnanensis and P. chienii.
DOI: 10.6084/m9.figshare.14100277.v1
title: Additional file 7 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 7: Table S4. KEGG enriched analysis of the DEGs between T. yunnanensis and P. chienii.
DOI: 10.6084/m9.figshare.14100280
title: Additional file 8 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 8: Table S5. Significance values of each KEGG term belonging to primary and secondary metabolism.
DOI: 10.6084/m9.figshare.14100274
title: Additional file 6 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 6: Table S3. GO categories of all the DEGs between T. yunnanensis and P. chienii.
DOI: 10.6084/m9.figshare.14100283
title: Additional file 9 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 9: Table S6. The detailed information of the unigenes encoding the enzymes that are involved in the MEP pathway.
DOI: 10.6084/m9.figshare.14100277
title: Additional file 7 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 7: Table S4. KEGG enriched analysis of the DEGs between T. yunnanensis and P. chienii.
DOI: 10.6084/m9.figshare.14100280.v1
title: Additional file 8 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 8: Table S5. Significance values of each KEGG term belonging to primary and secondary metabolism.
DOI: 10.6084/m9.figshare.14100283.v1
title: Additional file 9 of Omic analysis of the endangered Taxaceae species Pseudotaxus chienii revealed the differences in taxol biosynthesis pathway between Pseudotaxus and Taxus yunnanensis trees

description: Additional file 9: Table S6. The detailed information of the unigenes encoding the enzymes that are involved in the MEP pathway.
DOI: 10.6084/m9.figshare.14100294.v1
title: Additional file 10 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 10. Complete list of differentially expressed mouse non-coding genes. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Transcript name, Gene IDs, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100300.v1
title: Additional file 12 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 12 Complete list of differentially expressed Toxoplasma gondii genes. The first tab corresponds to wild type RH versus wild type PTG. The second tab corresponds to Myd88KO RH versus Myd88KO PTG. The third tab lists the differentially regulated T. gondii genes common to both comparisons. Transcript ID, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100294
title: Additional file 10 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 10. Complete list of differentially expressed mouse non-coding genes. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Transcript name, Gene IDs, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100321
title: Additional file 6 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 6. Complete list of differentially regulated mouse protein-coding genes in MyD88+/+ and MyD88−/− BMDM. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Transcript name, Gene IDs, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100300
title: Additional file 12 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 12 Complete list of differentially expressed Toxoplasma gondii genes. The first tab corresponds to wild type RH versus wild type PTG. The second tab corresponds to Myd88KO RH versus Myd88KO PTG. The third tab lists the differentially regulated T. gondii genes common to both comparisons. Transcript ID, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100321.v1
title: Additional file 6 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 6. Complete list of differentially regulated mouse protein-coding genes in MyD88+/+ and MyD88−/− BMDM. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Transcript name, Gene IDs, raw values, normalized values, PPDE values, fold changes, and other information are included.
DOI: 10.6084/m9.figshare.14100324
title: Additional file 7 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 7. Functional analysis of differentially expressed protein-coding genes. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Results were obtained using g:Profiler. Gene Ontology: Biological Process and KEGG Pathway analysis results are included.
DOI: 10.6084/m9.figshare.14100324.v1
title: Additional file 7 of Transcriptomics analysis of Toxoplasma gondii-infected mouse macrophages reveals coding and noncoding signatures in the presence and absence of MyD88

description: Additional file 7. Functional analysis of differentially expressed protein-coding genes. Each tab in the spreadsheet corresponds to a specific pairwise comparison (e.g., RH vs. uninfected). Results were obtained using g:Profiler. Gene Ontology: Biological Process and KEGG Pathway analysis results are included.
DOI: 10.6084/m9.figshare.14100424.v1
title: Additional file 1 of Using Kano diagrams to display the most cited article types, affiliated countries, authors and MeSH terms on spinal surgery in recent 12 years

description: Additional file 1: Dataset used in this study.
DOI: 10.6084/m9.figshare.14100424
title: Additional file 1 of Using Kano diagrams to display the most cited article types, affiliated countries, authors and MeSH terms on spinal surgery in recent 12 years

description: Additional file 1: Dataset used in this study.
DOI: 10.6084/m9.figshare.14100462
title: Additional file 10 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 10: Supplementary Table 9. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons.
DOI: 10.6084/m9.figshare.14100462.v1
title: Additional file 10 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 10: Supplementary Table 9. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons.
DOI: 10.6084/m9.figshare.14100465
title: Additional file 11 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 11: Supplementary Table 10. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons and BMI adjustment.
DOI: 10.6084/m9.figshare.14100465.v1
title: Additional file 11 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 11: Supplementary Table 10. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons and BMI adjustment.
DOI: 10.6084/m9.figshare.14100468
title: Additional file 12 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 12: Supplementary Table 11. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons and BMI adjustment.
DOI: 10.6084/m9.figshare.14100468.v1
title: Additional file 12 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 12: Supplementary Table 11. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons and BMI adjustment.
DOI: 10.6084/m9.figshare.14100474
title: Additional file 2 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 2: Supplementary Table 1. Descriptive characteristics of ALSPAC participants eligible vs ineligible for ≥1 analysis.
DOI: 10.6084/m9.figshare.14100474.v1
title: Additional file 2 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 2: Supplementary Table 1. Descriptive characteristics of ALSPAC participants eligible vs ineligible for ≥1 analysis.
DOI: 10.6084/m9.figshare.14100480
title: Additional file 4 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 4: Supplementary Table 3. Descriptive characteristics of participating ALSPAC offspring based on partners’ (of mothers) participation status.
DOI: 10.6084/m9.figshare.14100477
title: Additional file 3 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 3: Supplementary Table 2. Descriptive characteristics of participating ALSPAC mothers based on partners’ participation status.
DOI: 10.6084/m9.figshare.14100477.v1
title: Additional file 3 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 3: Supplementary Table 2. Descriptive characteristics of participating ALSPAC mothers based on partners’ participation status.
DOI: 10.6084/m9.figshare.14100480.v1
title: Additional file 4 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 4: Supplementary Table 3. Descriptive characteristics of participating ALSPAC offspring based on partners’ (of mothers) participation status.
DOI: 10.6084/m9.figshare.14100483
title: Additional file 5 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 5: Supplementary Table 4. Sex differences in metabolites at different life stages among ALSPAC offspring and parents.
DOI: 10.6084/m9.figshare.14100483.v1
title: Additional file 5 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 5: Supplementary Table 4. Sex differences in metabolites at different life stages among ALSPAC offspring and parents.
DOI: 10.6084/m9.figshare.14100486
title: Additional file 6 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 6: Supplementary Table 5. Sex differences in metabolites at different life stages among ALSPAC offspring and parents.
DOI: 10.6084/m9.figshare.14100489
title: Additional file 7 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 7: Supplementary Table 6. Sex differences in metabolites at different life stages among ALSPAC offspring and parents, with BMI adjustment.
DOI: 10.6084/m9.figshare.14100486.v1
title: Additional file 6 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 6: Supplementary Table 5. Sex differences in metabolites at different life stages among ALSPAC offspring and parents.
DOI: 10.6084/m9.figshare.14100489.v1
title: Additional file 7 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 7: Supplementary Table 6. Sex differences in metabolites at different life stages among ALSPAC offspring and parents, with BMI adjustment.
DOI: 10.6084/m9.figshare.14100492
title: Additional file 8 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 8: Supplementary Table 7. Sex differences in metabolites at different life stages among ALSPAC offspring and parents, with BMI adjustment.
DOI: 10.6084/m9.figshare.14100492.v1
title: Additional file 8 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 8: Supplementary Table 7. Sex differences in metabolites at different life stages among ALSPAC offspring and parents, with BMI adjustment.
DOI: 10.6084/m9.figshare.14100495
title: Additional file 9 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 9: Supplementary Table 8. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons.
DOI: 10.6084/m9.figshare.14100495.v1
title: Additional file 9 of Sex differences in systemic metabolites at four life stages: cohort study with repeated metabolomics

description: Additional file 9: Supplementary Table 8. Sex differences in metabolites in middle adulthood among ALSPAC parents, with menopausal comparisons.
DOI: 10.6084/m9.figshare.14100531
title: Additional file 2 of Genome sequencing, annotation and exploration of the SO2-tolerant non-conventional yeast Saccharomycodes ludwigii

description: Additional file 2 Supplementary tables This file has included a set of 10 supplementary tables providing: the list of S. ludwigii genes uncovered in this study but in the prior assembly (Table S1), the distribution of S. ludwigii genes across the 20 assembled contigs (Table S2), the functional clustering performed on the annotated S. ludwigii genes (Table S3), the list of S. ludwigii UTAD17 genes homologues for the 551 identified S. cerevisiae ohnologues (Table S4), the list of S. ludwigii UTAD17 genes for which we could not find orthologues in the genomes of H. uvarum, H. guilliermondii, S. cerevisiae, T. delbrueckii or L. fermentati (Table S5), functional annotation of genes involved in main carbon and nitrogen metabolic pathways in S. ludwigii UTAD17 and corresponding orthologues in H. uvarum, H. guilliermondii, T. delbrueckii or L. fermentati (Table S6); the list of genes predicted to encode enzymes influencing wine aroma (Table S7); the list of genes predicted to encode β-mannosyltransferases in the genome of S. ludwigii UTAD17 (Table S8); list of S. ludwigii UTAD17 genes orthologous to those found to mediate tolerance to ethanol, high glucose or to vinification conditions in S. cerevisiae (Table S9); list of S. ludwigii UTAD17 genes orthologus to those found to mediate tolerance to SO2 in S. cerevisiae (Table S10).
DOI: 10.6084/m9.figshare.14100531.v1
title: Additional file 2 of Genome sequencing, annotation and exploration of the SO2-tolerant non-conventional yeast Saccharomycodes ludwigii

description: Additional file 2 Supplementary tables This file has included a set of 10 supplementary tables providing: the list of S. ludwigii genes uncovered in this study but in the prior assembly (Table S1), the distribution of S. ludwigii genes across the 20 assembled contigs (Table S2), the functional clustering performed on the annotated S. ludwigii genes (Table S3), the list of S. ludwigii UTAD17 genes homologues for the 551 identified S. cerevisiae ohnologues (Table S4), the list of S. ludwigii UTAD17 genes for which we could not find orthologues in the genomes of H. uvarum, H. guilliermondii, S. cerevisiae, T. delbrueckii or L. fermentati (Table S5), functional annotation of genes involved in main carbon and nitrogen metabolic pathways in S. ludwigii UTAD17 and corresponding orthologues in H. uvarum, H. guilliermondii, T. delbrueckii or L. fermentati (Table S6); the list of genes predicted to encode enzymes influencing wine aroma (Table S7); the list of genes predicted to encode β-mannosyltransferases in the genome of S. ludwigii UTAD17 (Table S8); list of S. ludwigii UTAD17 genes orthologous to those found to mediate tolerance to ethanol, high glucose or to vinification conditions in S. cerevisiae (Table S9); list of S. ludwigii UTAD17 genes orthologus to those found to mediate tolerance to SO2 in S. cerevisiae (Table S10).
DOI: 10.6084/m9.figshare.14100571
title: Additional file 2 of Extracellular vesicles from HTLV-1 infected cells modulate target cells and viral spread

description: Additional file 2. Mass Spectrometry of 10 k EVs isolated from HUT102 cells (HTLV-1 infected cell line) and acquired MS/MS spectra were searched against a fully tryptic indexed human T-cell leukemia retrovirus database (UniProt) with Proteome Discoverer 2.1.
DOI: 10.6084/m9.figshare.14100571.v1
title: Additional file 2 of Extracellular vesicles from HTLV-1 infected cells modulate target cells and viral spread

description: Additional file 2. Mass Spectrometry of 10 k EVs isolated from HUT102 cells (HTLV-1 infected cell line) and acquired MS/MS spectra were searched against a fully tryptic indexed human T-cell leukemia retrovirus database (UniProt) with Proteome Discoverer 2.1.
DOI: 10.6084/m9.figshare.14100649
title: Additional file 1 of Insights into the diversification of subclade IVa bHLH transcription factors in Fabaceae

description: Additional file 1 Table S1. Numbering of G. max, M. truncatula, and L. japonicus bHLH genes. Table S2. List of species used for phylogenetic tree analysis of subclade IVa bHLHs. Table S3. Exon-intron organisation. Genes with additional introns in their CDSs are indicated in red. The length of these additional introns is given in brackets. Introns within the HLH domain are highlighted in yellow. Table S4. Numbers of genes in each subclade.
DOI: 10.6084/m9.figshare.14100649.v1
title: Additional file 1 of Insights into the diversification of subclade IVa bHLH transcription factors in Fabaceae

description: Additional file 1 Table S1. Numbering of G. max, M. truncatula, and L. japonicus bHLH genes. Table S2. List of species used for phylogenetic tree analysis of subclade IVa bHLHs. Table S3. Exon-intron organisation. Genes with additional introns in their CDSs are indicated in red. The length of these additional introns is given in brackets. Introns within the HLH domain are highlighted in yellow. Table S4. Numbers of genes in each subclade.
DOI: 10.6084/m9.figshare.14100691
title: Additional file 1 of Randomized crossover trial of a modified ketogenic diet in Alzheimer’s disease

description: Additional file 1.
DOI: 10.6084/m9.figshare.14100691.v1
title: Additional file 1 of Randomized crossover trial of a modified ketogenic diet in Alzheimer’s disease

description: Additional file 1.
DOI: 10.6084/m9.figshare.14100703
title: Additional file 3 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 2: Table S2. A list of all of the moss species sampled and where and how many samples were collected for each. The species sampled include 26 moss species.
DOI: 10.6084/m9.figshare.14100703.v1
title: Additional file 3 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 2: Table S2. A list of all of the moss species sampled and where and how many samples were collected for each. The species sampled include 26 moss species.
DOI: 10.6084/m9.figshare.14100709
title: Additional file 4 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 3: Table S4. Summary of the evidence for N2-fixation for each of the 22 phylotypes positively correlated with N2-fixation rate.
DOI: 10.6084/m9.figshare.14100709.v1
title: Additional file 4 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 3: Table S4. Summary of the evidence for N2-fixation for each of the 22 phylotypes positively correlated with N2-fixation rate.
DOI: 10.6084/m9.figshare.14100712.v1
title: Additional file 5 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 4: Table S5: Relative abundances of microbial families in each host species.
DOI: 10.6084/m9.figshare.14100712
title: Additional file 5 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 4: Table S5: Relative abundances of microbial families in each host species.
DOI: 10.6084/m9.figshare.14100715.v1
title: Additional file 6 of The bacterial communities of Alaskan mosses and their contributions to N2-fixation

description: Additional file 5: Table S9: Table summarizing the correlations between N2-fixation rate and the 22 putative N2-fixing phylotypes. We note that some phylotypes are listed more than once as they had significant positive correlations in multiple host species.