cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7910/dvn/hf9dnr
title: Global 2030 Anopheles stephensi suitability for Plasmodium vivax transmission at 97.5% CI (5 arc minutes), RCP 4.5, HadGEM2-ES

description: This dataset contains the 2030 global distributed predicted number of months suitable for transmission of Plasmodium vivax malaria by Anopheles stephensi mosquitoes per pixel (5 arc minutes - approximately 10km sq at the equator), under RCP 4.5, HadGEM2-ES. Please refer to the accompanying publication for details.
DOI: 10.15468/dl.rhbph2
title: Occurrence Download

description: A dataset containing 15906407 records in GBIF matching the query:
SELECT 
 "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" 
FROM occurrence 
WHERE 
 ("hasgeospatialissues" = 'false') AND 
 ("hascoordinate" = 'true') AND 
 ("occurrencestatus" = 'PRESENT') AND 
 NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND 
 ("decimallatitude" &gt;= 11) AND 
 ("decimallatitude" &lt; 36) AND 
 ("decimallongitude" &gt;= -85) AND 
 ("decimallongitude" &lt; -84) AND 
 ("year" &lt;= 2025)

 The dataset's 15906407 records were derived from 974 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003785-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28199918.v1
title: <b>Dataset for Strong Ultrafast Nonlinear Optical Response from MeV Electrons in Semiconductors</b>

description: Dataset for Strong Ultrafast Nonlinear Optical Response from MeV Electrons in Semiconductors
DOI: 10.6084/m9.figshare.28199918
title: <b>Dataset for Strong Ultrafast Nonlinear Optical Response from MeV Electrons in Semiconductors</b>

description: Dataset for Strong Ultrafast Nonlinear Optical Response from MeV Electrons in Semiconductors
DOI: 10.6084/m9.figshare.28945793
title: DNA modifications in specific nuclei populations purified from human brain tissue

description: Epigenetic variation has been implicated in brain development and the progression of brain disorders including neuropsychiatric and neurodegenerative diseases. The human cortex is highly complex, comprising a mix of different neural cells. We sought to generate reference maps of DNA modifications in each cell type using a Fluorescence Activated Nuclei Sorting (FANS) method developed by our group to separate cell-specific nuclei from bulk cortex tissue using cell-specific markers. DNA from each nuclei population was isolated and sequenced using Oxford Nanopore technology. DNA sequence was base-called and base modification (5-methyl-cytosine and 5-hydroxymethyl-cytosine) detected. For purposes of comparison, 5-methyl-cytosine (5mC) and 5-hydroxymethyl-cytosine (5hmC) were also detected using duet multiomics solution evoC 6-base sequencing (https://biomodal.com/products/duet-evoc/). The tab-delimited data files contain percentage modification of cytosines (5mC and 5hmC) located in autosomes of hg38 human assembly where the coverage is &gt;=10 in neuronal (NeuN) and oligodendrocyte (Sox10). Data is merged from three different individuals.
DOI: 10.6084/m9.figshare.28945793.v1
title: DNA modifications in specific nuclei populations purified from human brain tissue

description: Epigenetic variation has been implicated in brain development and the progression of brain disorders including neuropsychiatric and neurodegenerative diseases. The human cortex is highly complex, comprising a mix of different neural cells. We sought to generate reference maps of DNA modifications in each cell type using a Fluorescence Activated Nuclei Sorting (FANS) method developed by our group to separate cell-specific nuclei from bulk cortex tissue using cell-specific markers. DNA from each nuclei population was isolated and sequenced using Oxford Nanopore technology. DNA sequence was base-called and base modification (5-methyl-cytosine and 5-hydroxymethyl-cytosine) detected. For purposes of comparison, 5-methyl-cytosine (5mC) and 5-hydroxymethyl-cytosine (5hmC) were also detected using duet multiomics solution evoC 6-base sequencing (https://biomodal.com/products/duet-evoc/). The tab-delimited data files contain percentage modification of cytosines (5mC and 5hmC) located in autosomes of hg38 human assembly where the coverage is &gt;=10 in neuronal (NeuN) and oligodendrocyte (Sox10). Data is merged from three different individuals.
DOI: 10.15468/dl.w6srfb
title: Occurrence Download

description: A dataset containing 6561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Polyporus ciliatus"
 ]
}

 The dataset includes 6561 records from 224 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003797-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9fgcr
title: Occurrence Download

description: A dataset containing 22320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is United States of America",
 "DatasetKey is iNaturalist Research-grade Observations",
 "TaxonKey is Abaeis nicippe"
 ]
}

 The dataset includes 22320 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003799-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqfqzq
title: Occurrence Download

description: A dataset containing 33025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aedes albopictus",
 "Year 2021-2025"
 ]
}

 The dataset includes 33025 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003800-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28509341.v5
title: U.S. Federal Civil Agencies & Departments (2018-2023)

description: Data and Dofile for the U.S. Federal Civil Agencies & Departments (2018-2023)
DOI: 10.15468/dl.723urv
title: Occurrence Download

description: A dataset containing 5628176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5628176 records from 1679 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003778-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdjm8x
title: Occurrence Download

description: A dataset containing 1305 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Coordinate rounded",
 "OccurrenceStatus is Present",
 "TaxonKey is Bison bison bison"
 ]
}

 The dataset includes 1305 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001807-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vdkt5r
title: Occurrence Download

description: A dataset containing 179 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is TUN",
 "License is one of (CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Quercus L."
 ]
}

 The dataset includes 179 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010247-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2cuj6h
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Polybia platycephala"
 ]
}

 The dataset includes 12 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025442-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b3jjm2
title: Occurrence Download

description: A dataset containing 49 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinidia chinensis",
 "Country is France",
 "HasCoordinate is true"
 ]
}

 The dataset includes 49 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049749-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5axw6b
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Actinidia chinensis",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049750-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpvxsd
title: Occurrence Download

description: A dataset containing 14711 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Adinetidae, Brachionidae, Gastropodidae, Dicranophoridae, Asplanchnidae, Euchlanidae, Proalidae, Notommatidae, Philodinidae, Collothecidae, Lepadellidae, Conochilidae, Trichocercidae, Epiphanidae, Trochosphaeridae, Flosculariidae, Habrotrochidae, Hexarthridae, Ituridae, Lecanidae, Lindiidae, Mytilinidae, Trichotriidae, Microcodidae, Philodinavidae, Synchaetidae, Testudinellidae, Scaridiidae, Tetrasiphonidae, Centropagidae, Diaptomidae, Cyclopidae, Halicyclopidae, Lernaeidae, Canthocamptidae, Ameiridae, Laophontidae, Phyllognathopodidae, Miraciidae, Ergasilidae, Daphniidae, Moinidae, Bosminidae, Chydoridae, Macrothricidae, Ilyocryptidae, Neothricidae)",
 "Geometry POLYGON ((-181.131592 -37.12775, -187.78141 -33.078885, -189.068184 -33.987495, -186.411552 -37.925243, -192.774353 -44.251839, -195.387383 -46.345032, -192.379532 -48.31083, -188.062592 -45.989329, -183.377609 -41.69727, -180.416107 -38.542795, -181.131592 -37.12775))"
 ]
}

 The dataset includes 14711 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011396-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.57nsch
title: Occurrence Download

description: A dataset containing 11484 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is greater than or equal to 2021",
 "Year is less than or equal to 2024",
 "Geometry POLYGON((120.0137287 35.9926409,120.7007368 35.9926409,120.7007368 36.4089903,120.0137287 36.4089903,120.0137287 35.9926409))",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is FALSE",
 "BasisOfRecord is one of (Human Observation, Observation)"
 ]
}

 The dataset includes 11484 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011397-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngkw6n
title: Occurrence Download

description: A dataset containing 23185046 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Country is Australia",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)"
 ]
}

 The dataset includes 23185046 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011376-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcmds8
title: Occurrence Download

description: A dataset containing 126 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "Geometry POLYGON((26.84916 -32.07562,32.48229 -32.07562,32.48229 -27.00355,26.84916 -27.00355,26.84916 -32.07562))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aristida junciformis",
 "Year 2020-2025"
 ]
}

 The dataset includes 126 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011399-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28550954
title: Data files for Peromyscus Trail Crossing Study

description: We used mark-recapture across three adjacent trapping grids to identify movement of deer mice across wide recreational trails as compared to across a similar sized control spacing between trap grids in the adjacent woods. We examined three separate trails in the Ithaca, New York area: a gravel emergency access road, a dirt cross-country running trail, and a woodchip recreational path. Each trail was trapped for multiple seasons including both summer and fall sessions (although each trail was trapped in separate years). Mark-recapture allows identification of animal movements among the adjacent trap grids.
DOI: 10.6084/m9.figshare.28550954.v1
title: Data files for Peromyscus Trail Crossing Study

description: We used mark-recapture across three adjacent trapping grids to identify movement of deer mice across wide recreational trails as compared to across a similar sized control spacing between trap grids in the adjacent woods. We examined three separate trails in the Ithaca, New York area: a gravel emergency access road, a dirt cross-country running trail, and a woodchip recreational path. Each trail was trapped for multiple seasons including both summer and fall sessions (although each trail was trapped in separate years). Mark-recapture allows identification of animal movements among the adjacent trap grids.
DOI: 10.15468/dl.vq47bh
title: Occurrence Download

description: A dataset containing 8769674 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "MediaType is Image",
 "Country is one of (United States of America, Canada)",
 "License is one of (CC0 1.0, CC-BY 4.0)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8769674 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011369-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wugc7c
title: Occurrence Download

description: A dataset containing 36072044 species occurrences available in GBIF matching the query:
{
 "and" : [
 "KingdomKey is Plantae",
 "Country is United States of America",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Human Observation, Machine Observation)"
 ]
}

 The dataset includes 36072044 records from 923 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011377-260120142942310/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5aa3ur
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathytroctes Günther, 1878",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 10.8496,35.9648 10.8496,35.9648 1.8496,44.9648 1.8496,44.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010408-250525065834625/datasets/export for details.
DOI: 10.5061/dryad.866t1g202
title: Towards DNA metabarcoding-based haplotype for monitoring terrestrial arthropod communities

description: Whole-organism community DNA (wocDNA) metabarcoding has become a necessary
 and powerful tool to study mixed communities from bulk samples by
 detecting short DNA sequences. This review integrates the use of
 arthropods as ecological indicators through wocDNA metabarcoding, covering
 key methodological aspects from sampling design to bioinformatics, and
 highlighting ASV-based (Amplicon Sequence Variants) pipelines for
 incorporating haplotype-level variation. The success of wocDNA
 metabarcoding relies on proper sampling methods, good laboratory
 practices, cleaning of bulk samples, selecting suitable arthropod sizes,
 efficient DNA extractions, accurate library quantification, appropriate
 genetic markers for accurate taxonomic identification, and effective
 sequence filtering. Incorporating haplotype data into monitoring unveils
 intraspecific variation that could complement species-level diversity,
 thus enhancing conventional analyses. Choosing abundance- or
 incidence-based approaches is key for selecting appropriate statistical
 methods. WocDNA metabarcoding provides biodiversity estimates for
 entire communities and allows researchers to derive insights that can
 inform the formulation or refinement of hypotheses. These refined
 hypotheses, based on the obtained biodiversity estimates, can then guide
 ecosystem conservation.
description: # Towards DNA metabarcoding-based haplotype for monitoring terrestrial
 arthropod communities This dataset includes the sequences aligned, ASVs
 tables, and ASVs with Threshold generated from 33 whole communities of
 biodiversity soups in Nevado de Toluca using different trap types. For
 additional information on the sample codes and scripts, please see at
 GitHub repository
 [https://github.com/Nancy-Galvez/MetaBC_Traps](https://github.com/Nancy-Galvez/MetaBC_Traps). Data content: * `1AlignedSeq` contains the results of `0.4Searching_Stop_Codons.txt`. This file contains each ASV dataset was aligned in Geneious for searching codon stops. You can use the FASTA files in the `0.5to_get_ASV_tables.sh` script. * `2ASVs_Table` contains the results of the `0.5to_get_ASV_tables.sh` analysis. Each community table was generated with read-counts (haplotype abundance) of each retained ASV for the eight orders by matching ASVs against the complete collection of reads. After each ASV table, you can use `0.6to_get_UPGMAtree_GMYC_MH_lineages_All.r` and `3.to_get_conservative_threhold_on_original_all.r` * `3ASVThresholdCommunities` contains all matrix tables used in `4.to_get_Diversity_All.r` **Enjoy it**
DOI: 10.5517/ccdc.csd.cc2qt30p
title: CCDC 2526562: Experimental Crystal Structure Determination

description: Related Article: Huang Yuanyuan|2026|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5061/dryad.j6q573np8
title: 2022 NSF Research Master File

description: SP MS70 drive - Master file of all years 2021-2024 activities linked to
 publication, "Scouring for Prehistory" - An Opportunistic
 Methodology for Sea Floor Archaeology, Atlantic continental
 shelf, Georgia USA. https://doi.org/10.3390/heritage7070161 Linked to
 Datasets: DOI: 10.5061/dryad.c2fqz61hw and DOI: 10.5061/dryad.zkh1893jk
 Linked to Articles: https://doi.org/10.3390/heritage7070161 -
 "Scouring for Prehistory" &
 https://doi.org/10.1016/j.quascirev.2024.108725 - "Moats &
 Comets" 
description: geophysics, GIS, ROV, sediment grabs and cores, diving, PSA,
 pollen analysis, DNA, UV/blue light, loss on ignition, XRD, SEM-EDS,
 photogrammetry
description: # 2022 NSF Master File 10-6 (CCA) & 10-7 (KTK) 4K videos, 10-6-7-2022
 ROV videos, Lab and Pool videos, Lenovo QGC telemetry, Reef CCA videos,
 Reef JY-Sagebrush videos and images, Reek KTK videos, Reef SAV videos,
 Ricoh videos and images, Wilmington River videos and sonar ## Description
 of the data and file structure 10-6 (CCA) & 10-7 (KTK) 4K uses .PNG,
 .jpg, and .MP4 file formats. 10-6-7-2022 ROV videos uses .MKV file
 formats. Lab and Pool videos uses .MP4 and .MKV file formats. Lenovo QGC
 telemetry uses .tlog file format and PingViewer software is needed to
 view. PingViewer is a proprietary software and can be purchased through
 [https://bluerobotics.com/](https://bluerobotics.com/) This data is not
 able to be published in this archive but can be accessed upon request.
 Reef CCA uses .MP4 file format. Reef JY-Sagebrush uses .MP4, .PNG, and
 .MKV file formats Reef KTK uses .MKV file format. Reef SAV uses .MKV file
 format. Ricoh Video & Images uses .AVI and .jpg file formats.
 Wilmington River uses .MP4, .MKV, and .bin file formats, and PingViewer
 software are needed to view .bin SONAR files. PingViewer is a proprietary
 software and can be purchased through
 [https://bluerobotics.com/](https://bluerobotics.com/) This data is not
 able to be published in this archive because it is proprietary but can be
 accessed upon request. ## Related Works 2021 NSF Research Master File -
 DOI: 10.5061/dryad.c2fqz61hw 2023 NSF Research Master File - DOI:
 10.5061/dryad.zkh1893jk "Scouring for Prehistory" - An
 Opportunistic Methodology for Sea Floor Archaeology, Atlantic continental
 shelf, Georgia USA. - DOI:
 [https://doi.org/10.3390/heritage7070161](https://doi.org/10.3390/heritage7070161) "Moats & comets" - A methodology to explore submerged prehistory at sea floor erosional features formed at artificial reefs, Atlantic continental shelf, GeorgiaUSA. - DOI: [https://doi.org/10.1016/j.quascirev.2024.108725](https://doi.org/10.1016/j.quascirev.2024.108725)