cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c5rr32
title: MassIVE MSV000086332 - Novel drought adaptation strategies identified by comparing organelle- and cytoplasmic-enriched protein profiles of two Sorghum bicolor genotypes (RTx430 and BTx642) with differing pre-flowering drought tolerance
title: Proteomics of organelle and cytoplasmic enriched samples from Sorghum bicolor RTx430 (pre-flowering drought tolerant) and RTx642 (pre-flowering drought sensitive) before and during drought. 3 biological replicates, except BTx642 drought samples, which had 2 biological replicates due to limited sample. Identified multiple protein-level responses in both genotypes, demonstrated that these responses are consistent with the literature, as well as identified multiple RTx430-specific changes that suggest novel drought-tolerance strategies unique to RTx430. Sorghum leaves (both genotypes, +/- drought) were separated into cytosolic and organelle fractions, then digested with trypsin, and analyzed by LC-MS/MS. Data was searched using MaxQuant's Andromeda and a UniProt database. Data was then evaluated for missingness, normalized, and missing values imputed using Bioconductor R package DEP (Zhang et al. 2018).
DOI: 10.13012/b2idb-1403534_v2
title: Network of First and Second-generation citations to Matsuyama 2005 from Google Scholar and Web of Science

description: This second version (V2) provides additional data cleaning compared to V1, additional data collection (mainly to include data from 2019), and more metadata for nodes. Please see NETWORKv2README.txt for more detail.
DOI: 10.5066/p9is5aa8
title: CO2 flux and soil temperature measurements at the Shady Rest thermal area, Mammoth Lakes, California, 2010-2019

description: The Shady Rest thermal area (SRST) is characterized by elevated soil temperatures and CO2 emissions and associated vegetation kill. The site is located about 3 km northwest of the Casa Diablo geothermal power plant at Mammoth Lakes, California. The elevated soil temperatures and CO2 emissions are related to changes in the shallow hydrothermal system caused by geothermal fluid production. During late 2006 changes at the Casa Diablo geothermal power plant included installation of 2 new production wells near SRST. Fluid production from these wells resulted in the expansion of areas of existing thermal ground, development of new thermal ground and an increase in the number of tree kills. Between 2006 and 2019 the USGS made yearly measurements of CO2 flux and soil temperature across SRST to establish baseline conditions and otherwise document geothermal-related disturbances. The original network of measurement sites established in 2006 included 77 locations across approximately 61,000 m2. Those data are reported in Bergfeld and Evans (2011). This dataset reports results of flux and soil temperature measurements between June 2010 and October 2019. The measurements were made over a approximately 100,000 m2 network consisting of 129 points.
DOI: 10.6084/m9.figshare.13110032.v1
title: R0310_20191106a_videos

description: Rat 0310, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5281/zenodo.4107060
title: Files to retrieve effective radius and extinction coefficient in liquid clouds from depolarization observations at two FOVs

description: <pre>Files needed to retrieve the effective radius and cloud extinction coefficient at 75 meters above liquid clouds, assumed as subadiabatic, using observations of \delta_in and delta_rat as explained in acp-2020-473. The FOVs considered are FOV_in=1.0 mrad and FOV_in=2.0 mrad. The files Input_alpha_75.txt and Input_r75.txt contain respectively the input values of the extinction and effective radius (at 75m above CB). 235 input values of alpha_75 and 122 values of r_75. The file Polynomial_coeff_r75_vs_depol_rat_all_cloud-bases.txt contains the coefficients of a ciubic polynom to compute the effective radius using observations of delta_rat. These set of 4 coefficients is provided for all 8 cloud base heights, having a size of 4x8. The files matrix_alpha_vs_depolin_and_r75_XXXX.txt, with XXXX the cloud base in meters (varying from 1000 to 5000 meters), provide each matrix of size 235x122 containing the value of the simulated integrated depolarizaiton ratio at the FOV in (i.e delta_in in acp-2020-473), for the given 235 input-values of alpha_75 (provided in the File Input_alpha_75.txt) and given 122 values of r_75 (provided in File Input_r75.txt). This matrix shall be used to determine alpha_75 after knowing r_75 and depol_in. </pre>
DOI: 10.5519/qd.eaj7xo4n
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (24 records)
DOI: 10.6084/m9.figshare.12543050
title: Feature Frequency Profile-based phylogenies are inaccurate

description: Methods, codes and results for manuscript Feature Frequency Profile-based phylogenies are inaccurate.
DOI: 10.17632/4jfgz3z5pd.5
title: Jurujuba Cove pore water and sediment Data - Rio de Janeiro - Brazil

description: The Jurujuba Sound is located within Guanabara Bay (Rio de Janeiro - Brazil), this overpopulated region probably may have contributed to the accumulation of chemical compounds in the sediments by diffuse sources (the Cachoeira and Icaraí rivers). Jurujuba Sound also supports a considerable area of mussel farms. In this research two main investigation approaches had been chosen, pore water and sediments nutrients. This work aims to indicate the characteristic distribution of the superficial sediment (pH, Eh, particular size, carbonate, organic matter and phosphorus, and nutrients present in pore-water (C, N, P) along Jurujuba Sound area. The pH and Eh were measured in-situ using a Hanna Multiparameter probe. In the laboratory, nutrients in pore-ware water were measured by the colorimetric method with a KASUAKI UV / VIS spectrometer at different wavelengths for phosphate (and total phosphorous) (880 nm), nitrate (505 nm), nitrite (540 nm), and ammonium (630 nm). The grain size analysis was determined on a laser analyzer, carbonate was performed by mass difference. Spatial distribution maps were produced for each parameter, to assess nutrients spatial behavior and their relationships with other parameters. The results demonstrate high N and P concentrations in pore water, indicating the possible release of the relevant nutrient amount in the water column. The high rate of domestic effluent input (Confirmed by TOC/TN ratio) led to high nutrient levels in sediments and porewater, potential release from the bottom sea could cause fish mortality events and other toxic effects.
DOI: 10.17632/fc5cd6pzyp.1
title: Data and Code for Petach and Pena (2020)

description: Data and code for Petach and Pena (2020). "Local Labor Market Inequality in the Age of Mass Incarceration." Review of Black Political Economy.
DOI: 10.17632/yxy3dg2wt6.1
title: Cannabis Exposure as a Potent Gene-Environment Interaction Driving Increasing Testicular Cancer Rates Across All US Ethnicities: Combined Geotemporospatial, Multiple Imputation and Causal Inference Study - Dataset

description: Data accompanies paper of same title
DOI: 10.17632/ttzb9xvb4v.1
title: Cannabis Exposure and Cannabis Legalization as a Potent Gene-Environment Interaction Driving Increasing Testicular Cancer Rates Across USA: Combined Geospatial and Causal Inference Study - Dataset

description: This data accompanies the article of the same name.
DOI: 10.17632/jsw4ftz5gg.1
title: Dataset#2 Archaeozoological evidence of working exploitation of cattle in the Bronze Age of the Southern Trans-Urals

description: The dataset#2 (supplementary data) contains tables, results of X-ray, images of cattle pathologies from seven Bronze Age settlements in the Southern Trans-Urals . The article presents the results of the analysis of several types of bone pathologies of the postcranial skeleton of cows, bulls and oxen in order to identify the possible fact of working cattle exploitation. The material comes from several settlements of the steppe and forest-steppe zones of the Southern Trans-Urals of the Sintashta and Alakul cultures of the Bronze Age. The work is based on the results of studying the pathologies of modern non-working cattle in the Southern Trans-Urals. The analysis of the selected pathologies and their comparison with modern material showed that most pathologies reflect age-related changes and other factors that are not associated with the physical exploitation of bulls and oxen. Single pathologies from the Kamennyi Ambar settlement and the age of the animals from which they originate make it possible to reconstruct the working use of bulls even in the context of the complete absence of other evidence of this kind of animal exploitation. However, we cannot completely exclude the possibility that these changes may be caused not only by increased stress on the joint in the form of working exploitation. Severe pathologies on the bones of cows are not the result of working use.
DOI: 10.17632/4x4csd8rx3.1
title: Dataset#1 Archaeozoological evidence of working exploitation of cattle in the Bronze Age of the Southern Trans-Urals

description: The supplementary data contains a list of identified cattle pathologies from seven Bronze Age settlements in the Southern Trans-Urals and the results of measurements of bones with pathologies. The article presents the results of the analysis of several types of bone pathologies of the postcranial skeleton of cows, bulls and oxen in order to identify the possible fact of working cattle exploitation. The material comes from several settlements of the steppe and forest-steppe zones of the Southern Trans-Urals of the Sintashta and Alakul cultures of the Bronze Age. The work is based on the results of studying the pathologies of modern non-working cattle in the Southern Trans-Urals. The analysis of the selected pathologies and their comparison with modern material showed that most pathologies reflect age-related changes and other factors that are not associated with the physical exploitation of bulls and oxen. Single pathologies from the Kamennyi Ambar settlement and the age of the animals from which they originate make it possible to reconstruct the working use of bulls even in the context of the complete absence of other evidence of this kind of animal exploitation. However, we cannot completely exclude the possibility that these changes may be caused not only by increased stress on the joint in the form of working exploitation. Severe pathologies on the bones of cows are not the result of working use.
DOI: 10.17632/vt3cnmz9bc.1
title: Data of transcriptome and differentially expressed genes from developing seeds of cultivated (Sesamum indicum), wild (S. mulayanum) and RILs of sesame

description: Supplementary materials with the article
DOI: 10.17632/5ty77xth22.4
title: The fate of sulfur and chalcophile elements during crystallization of the lunar magma ocean

description: Compiled electron microprobe, LA-ICP-MS analyses of experimental run products and additional supporting information, including a online calculator for the SCSS and sulfide-silicate D values.
DOI: 10.17632/cw56k4nt9p.1
title: PDA Collected Signatures

description: The database contains signatures of 15 people and 3 forgers collected using a Windows Mobile PDA device [285 signatures - SVC2004 format].
DOI: 10.34740/kaggle/dsv/1572870
title: US counties COVID 19 dataset
DOI: 10.6084/m9.figshare.13114466
title: COVID-19 lockdowns reveal pronounced disparities in nitrogen dioxide pollution levels

description: Re-gridded TROPOMI NO2 data at 0.01 x 0.01 degree resolution.<br>First file is a March 13 - June 13, 2019 average representing the "pre-COVID-19" baseline<br>Second file is a March 13 - June 13, 2020 average representing the"post-COVID-19" lockdown.<br><br>Latitude and Longitude file is also included. Each latitude and longitude value represents the center of the gridbox. Each gridbox edge is offset by 0.005 degrees,
DOI: 10.6084/m9.figshare.13114466.v1
title: COVID-19 lockdowns reveal pronounced disparities in nitrogen dioxide pollution levels

description: Re-gridded TROPOMI NO2 data at 0.01 x 0.01 degree resolution.<br>First file is a March 13 - June 13, 2019 average representing the "pre-COVID-19" baseline<br>Second file is a March 13 - June 13, 2020 average representing the"post-COVID-19" lockdown.<br><br>Latitude and Longitude file is also included. Each latitude and longitude value represents the center of the gridbox. Each gridbox edge is offset by 0.005 degrees,
DOI: 10.6084/m9.figshare.13114484
title: Archaea-plaac-results.tsv.gz

description: data file for internal use
DOI: 10.6084/m9.figshare.13114484.v1
title: Archaea-plaac-results.tsv.gz

description: data file for internal use
DOI: 10.21227/y9ga-9s70
title: Sierra Nevada Snow 2001-2019, Validation for SPIReS

description: The files here support the analysis presented in the paper in IEEE Transactions on Geoscience and Remote Sensing, "Snow Property Inversion from Remote Sensing (SPIReS): A Generalized Multispectral Unmixing Approach with Examples from MODIS and Landsat 8 OLI" Spectral mixture analysis has a history in mapping snow, especially where mixed pixels prevail. Using multiple spectral bands rather than band ratios or band indices, retrievals of snow properties that affect its albedo lead to more accurate estimates than widely used age-based models of albedo evolution. Nevertheless, there is substantial room for improvement. We present the Snow Property Inversion from Remote Sensing (SPIReS) approach, offering the following improvements: (1) Solutions for grain size and concentrations of light absorbing particles are computed simultaneously; (2) Only snow and snow-free endmembers are employed; (3) Cloud-masking and smoothing are integrated; (4) Similar spectra are grouped together and interpolants are used to reduce computation time. The source codes are available in an open repository. Computation is fast enough that users can process imagery on demand. Validation of retrievals from Landsat 8 OLI and MODIS against WorldView-2/3 and the Airborne Snow Observatory shows accurate detection of snow and estimates of fractional snow cover. Validation of albedo shows low errors using terrain-corrected in situ measurements. We conclude by discussing the applicability of this approach to any airborne or spaceborne multispectral sensor and options to further improve retrievals.
DOI: 10.5281/zenodo.4107208
title: OSIRIS Ozone

description: OSIRIS spectra of limb scattered sunlight are used to retrieve ozone number density vertical profiles over the altitude range from 10 to 60 km at a vertical resolution of approximately 1.5 km using the a Multiplicative Algebraic Reconstruction Technique, which is a one dimensional modification of a two-dimensional tomographic retrieval algorithm. This technique allows for the consistent merging of the absorption information from radiance measurements at wavelengths in the Chappuis and the Hartley-Huggins bands at each iteration of the inversion. A set of weighting factors is used to determine the importance of each line of sight and each element of the measurement vector for the retrieved state at each altitude. Retrieval algorithm details can be found in Degenstein et al., 2009. The current version of the ozone product is version 5.10, which implements a tangent altitude registration correction algorithm to correct a small long term drift. See Bourassa et al., 2018.
description: Global Coverage
DOI: 10.6084/m9.figshare.13114511
title: archaea-plaac-core-score-0-results.tsv

description: data file for internal use
DOI: 10.6084/m9.figshare.13114511.v1
title: archaea-plaac-core-score-0-results.tsv

description: data file for internal use
DOI: 10.5281/zenodo.4106878
title: Emb3_2x2_Mosaic_2CAMs_12GB

description: Mouse embryo head, 3D cropped out volume from the complete scan, 2 columns x 2 rows mosaic, two camera views, dividing nuclei in PH3-A488 fluorescence channel. The 3D tiles are stored as series of 2D TIFF files. The original dataset is 866 GB in size and includes 2 fluorescence channels.
DOI: 10.5281/zenodo.4106877
title: Emb3_2x2_Mosaic_2CAMs_12GB

description: Mouse embryo head, 3D cropped out volume from the complete scan, 2 columns x 2 rows mosaic, two camera views, dividing nuclei in PH3-A488 fluorescence channel. The 3D tiles are stored as series of 2D TIFF files. The original dataset is 866 GB in size and includes 2 fluorescence channels.
DOI: 10.25439/rmt.12940016
title: Spoken Conversational Search Dataset

description: SCSdataset.csv is the full dataset used in Trippas, Spina, Cavedon, Joho, and Sanderson (2018). The SCSdataset now contains all utterances and has the same format, but does not include “notes”, as the ConversationalSearchDataSet.csv.<br>The file ConversationalSearchDataSet.csv contains a set of 101 transcribed conversations to solve information needs based on backstories in Trippas, Spina, Cavedon, and Sanderson (2017a).<br>The collection and transcription process is described in Trippas, Spina, Cavedon, and Sanderson (2017a) and Trippas, Spina, Cavedon, and Sanderson (2017b), along with an initial analysis. Further analysis of the transcriptions and observations are published in Trippas, Spina, Cavedon, Joho, and Sanderson (2018)
DOI: 10.6084/m9.figshare.13114250
title: R0310_20191107a_videos

description: Rat 0310, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.5066/p9mloas9
title: Water-quality data at two unnamed lakes at the National Crude Oil Spill Fate and Natural Attenuation Research Site near Bemidji, Minnesota, 2019

description: The National Crude Oil Spill Fate and Natural Attenuation Research Site is located near where about 1.7 million liters of crude oil spilled in 1979. Much of the oil spill leached into groundwater which flows towards an unnamed lake at the site. The U.S. Geological Survey Branch of Hydrogeophysics has been working to map the plume's extent on land and into the lake using a variety of geophysical techniques. In 2018, the group was able to map a group of anomalies within the lake consisting of elevated specific conductance concentrations. It was determined that these specific conductance anomalies were likely attributed to hydrocarbon plumes leaching into the lake. In 2019, the U.S. Geological Survey Central Midwest Water Science Center deployed an Ecomapper Autonomous Underwater Vehicle (AUV) and two EXO2 multi-parameter sondes to directly measure basic water quality parameters using several different approaches. These data were used for comparison to indirect geophysical measurements and to characterize water quality within the main unnamed lake (north lake) and a nearby smaller unnamed lake (south lake).
DOI: 10.17632/78cchzdzny.1
title: Data for: Optical and Chemical Properties of Long-range Transported Aerosols Using Satellite and Ground-based Observations over Seoul, South Korea
DOI: 10.6084/m9.figshare.13114517
title: Meteorological observations at MAZ 202009

description: Meteorological observations at MAZ station in september 2020.La Victoria, Lima, Peru, <br>More details can be found in the Technical Note of this collection.https://doi.org/10.6084/m9.figshare.13114562<br><br>
DOI: 10.6084/m9.figshare.13114517.v1
title: Meteorological observations at MAZ 202009

description: Meteorological observations at MAZ station in september 2020.La Victoria, Lima, Peru, <br>More details can be found in the Technical Note of this collection.https://doi.org/10.6084/m9.figshare.13114562<br><br>
DOI: 10.6084/m9.figshare.13114577
title: Resultados Encuesta: Violencia de Género en el TPU de Saltillo

description: This data set derives from the survey conducted to research women's safety perceptions while using the public transport system of Saltillo and their behavioural changes after experiencing sexual assault or harassment while in public transport
DOI: 10.6084/m9.figshare.13114577.v1
title: Resultados Encuesta: Violencia de Género en el TPU de Saltillo

description: This data set derives from the survey conducted to research women's safety perceptions while using the public transport system of Saltillo and their behavioural changes after experiencing sexual assault or harassment while in public transport
DOI: 10.5517/ccdc.csd.cc251t35
title: CCDC 1997736: Experimental Crystal Structure Determination

description: Related Article: Chang Qiao, Alba Villar-Yanez, Josefine Sprachmann, Bart Limburg, Carles Bo, Arjan W. Kleij|2020|Angew.Chem.,Int.Ed.|59|18446|doi:10.1002/anie.202007350
DOI: 10.5517/ccdc.csd.cc25795x
title: CCDC 2003008: Experimental Crystal Structure Determination

description: Related Article: Christopher M. Poteat, Yujin Jang, Myunggi Jung, J. Drake Johnson, Rachel G. Williams, Vincent N. G. Lindsay|2020|Angew.Chem.,Int.Ed.|59|18655|doi:10.1002/anie.202006786
DOI: 10.5517/ccdc.csd.cc257qgm
title: CCDC 2003420: Experimental Crystal Structure Determination

description: Related Article: Jens Kalmbach, Cui Wang, Yi You, Christoph Förster, Hartmut Schubert, Katja Heinze, Ute Resch-Genger, Michael Seitz|2020|Angew.Chem.,Int.Ed.|59|18804|doi:10.1002/anie.202007200
DOI: 10.5517/ccdc.csd.cc257qhn
title: CCDC 2003421: Experimental Crystal Structure Determination

description: Related Article: Jens Kalmbach, Cui Wang, Yi You, Christoph Förster, Hartmut Schubert, Katja Heinze, Ute Resch-Genger, Michael Seitz|2020|Angew.Chem.,Int.Ed.|59|18804|doi:10.1002/anie.202007200
DOI: 10.6084/m9.figshare.13110758
title: R0309_20191120a_videos

description: Rat 0309, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.6084/m9.figshare.13114250.v1
title: R0310_20191107a_videos

description: Rat 0310, skilled reaching data collected in Leventhal laboratory by Alexandra Bova
DOI: 10.15468/2y7wfj
title: Delimitation, new species and teleomorph-anamorph relationships in Codinaea, Dendrophoma, Paragaeumannomyces and Striatosphaeria (Chaetosphaeriaceae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reblova, Martina, Nekvindova, Jana, Fournier, Jacques, Miller, Andrew N. (2020): Delimitation, new species and teleomorph-anamorph relationships in Codinaea, Dendrophoma, Paragaeumannomyces and Striatosphaeria (Chaetosphaeriaceae). MycoKeys 74: 17-74, DOI: http://dx.doi.org/10.3897/mycokeys.74.57824, URL: http://dx.doi.org/10.3897/mycokeys.74.57824
DOI: 10.15468/2mwzyj
title: Morphological and phylogenetic characterisations reveal three new species of Samsoniella (Cordycipitaceae, Hypocreales) from Guizhou, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chen, Wan-Hao, Han, Yan-Feng, Liang, Jian-Dong, Tian, Wei-Yi, Liang, Zong-Qi (2020): Morphological and phylogenetic characterisations reveal three new species of Samsoniella (Cordycipitaceae, Hypocreales) from Guizhou, China. MycoKeys 74: 1-15, DOI: http://dx.doi.org/10.3897/mycokeys.74.56655, URL: http://dx.doi.org/10.3897/mycokeys.74.56655
DOI: 10.6084/m9.figshare.13114604
title: Raw data

description: raw data sets
DOI: 10.6084/m9.figshare.13114604.v1
title: Raw data

description: raw data sets
DOI: 10.5281/zenodo.3966750
title: Data from: Trade-off between standing biomass and productivity in species-rich tropical forest: evidence, explanations and implications

description: These files are the R code and plot data files used for calculating species population turnover of biomass and abundance in a tropical forest plot. This dataset is a processed subset of the original dataset used in our analysis of biomass turnover across tree populations as demonstrated in the main paper. Readers interested in using the Pasoh 50-ha plot data for purposes other than reviewing our analysis are advised to contact the Forest Research Institute Malaysia (FRIM) and the Center for Tropical Forest Science-Forest Global Earth Observatory (CTFS-Forest GEO), Smithsonian Tropical Research Institute.