cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.58060/p6p2-2697
title: EVA project # 198 2024-01-22 Challenges and achievements of Natura 2000 protected areas in conserving habitat diversity - L. Ricci, M. Di Musciano
title: SELECTION 2024-03-01

description: Final approved selection from European Vegetation Archive (EVA, incl. ReSurveyEurope) database for this EVA project specified with selection date. The EVA data are available on request using procedure described at How to obtain data (https://euroveg.org/eva-database/obtaining-data).
DOI: 10.15468/dl.hhj3x2
title: Occurrence Download

description: A dataset containing 30403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pycnonotus jocosus (Linnaeus, 1758)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 30403 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003963-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5repjh
title: Occurrence Download

description: A dataset containing 1087849331 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America"
 ]
}

 The dataset includes 1087849331 records from 5319 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198047-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgpjdu
title: Occurrence Download

description: A dataset containing 367 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Totoaba Villamar, 1980"
 ]
}

 The dataset includes 367 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0370756-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k5wqcb
title: Occurrence Download

description: A dataset containing 143 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taraxacum brevirostre Hand.-Mazz."
 ]
}

 The dataset includes 143 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005569-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq6yyt
title: Occurrence Download

description: A dataset listing the 2 species recorded in GBIF matching the query:
{
 "and" : [
 "GadmGid is ESP.6_1",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ciconia ciconia (Linnaeus, 1758)"
 ]
}

 The dataset's 2 records were derived from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0315947-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xhjste
title: Occurrence Download

description: A dataset containing 78190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes nigrum L.",
 "HasCoordinate is TRUE",
 "HasGeospatialIssue is False",
 "DecimalLatitude is less than 90",
 "DecimalLongitude is less than 180",
 "DecimalLatitude is greater than -90",
 "DecimalLongitude is greater than -180"
 ]
}

 The dataset includes 78190 records from 444 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005568-230810091245214/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwm7px
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Yucca gloriosa L.",
 "HasCoordinate is true",
 "Country is Japan",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0332593-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ubfpw
title: Occurrence Download

description: A dataset containing 36323 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursus americanus Pallas, 1780"
 ]
}

 The dataset includes 36323 records from 172 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0022419-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4nrm5g
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "TaxonKey is Mundulea DC. ex Miq."
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0360323-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vbmpr9
title: Occurrence Download

description: A dataset containing 249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Africa",
 "Country is Kenya",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (February, January, March, April, May, June, July, August, September, October, November, December)",
 "OccurrenceStatus is Present",
 "TaxonKey is Acacia Mill.",
 "Year 1990-2023"
 ]
}

 The dataset includes 249 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0117871-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ru67r3
title: Occurrence Download

description: A dataset containing 13654 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 {
 "or" : [
 "TaxonKey is Gloydius halys (Pallas, 1776)",
 "TaxonKey is Gloydius brevicauda (Stejneger, 1907)",
 "TaxonKey is Lycodon ruhstrati (Fischer, 1886)",
 "TaxonKey is Lycodon liuchengchaoi Zhang, Jiang, Vogel & Rao, 2011",
 "TaxonKey is Sibynophis chinensis (Günther, 1889)",
 "TaxonKey is Rhabdophis tigrinus (Boie, 1826)",
 "TaxonKey is Zaocys dhumnades Cope, 1860",
 "TaxonKey is Elaphe rufodorsatus (Cantor, 1842)",
 "TaxonKey is Elaphe taeniura (Cope, 1861)",
 "TaxonKey is Euprepiophis mandarinus (Cantor, 1842)",
 "TaxonKey is Elaphe davidi (Sauvage, 1884)",
 "TaxonKey is Elaphe carinata (Günther, 1864)",
 "TaxonKey is Elaphe dione (Pallas, 1773)",
 "TaxonKey is Elaphe anomala (Boulenger, 1916)",
 "TaxonKey is Lycodon Fitzinger, 1826",
 "TaxonKey is Orientocoluber spinalis (Peters, 1866)",
 "TaxonKey is Phrynocephalus przewalskii Strauch, 1876",
 "TaxonKey is Eremias argus Peters, 1869",
 "TaxonKey is Eremias brenchleyi Günther, 1872",
 "TaxonKey is Scincella modesta (Günther, 1864)",
 "TaxonKey is Eumeces capito Bocourt, 1879",
 "TaxonKey is Gekko swinhonis Günther, 1864",
 "TaxonKey is Pelodiscus sinensis Wiegmann, 1835",
 "TaxonKey is Bombina orientalis (Boulenger, 1890)",
 "TaxonKey is Kaloula borealis (Barbour, 1908)",
 "TaxonKey is Pelophylax nigromaculata (Hallowell, 1861)",
 "TaxonKey is Pelophylax plancyi (Lataste, 1880)",
 "TaxonKey is Rana chensinensis David, 1875",
 "TaxonKey is Bufonidae",
 "TaxonKey is Bufo gargarizans Cantor, 1842"
 ]
 }
 ]
}

 The dataset includes 13654 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0357958-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zaf6x2
title: Occurrence Download

description: A dataset containing 16965 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solanum aculeastrum Dunal, Solanum anguivi Lam., Solanum aethiopicum L., Solanum agnewiorum Voronts., Solanum anomalum Thonn., Solanum arundo Mattei, Solanum aureitomentosum Bitter, Solanum batoides D' Arcy & Rakot., Solanum bumeliifolium Dunal, Solanum burchellii Dunal, Solanum campylacanthum Hochst. ex A.Rich., Solanum capense L., Solanum catombelense Peyr., Solanum cerasiferum Dunal, Solanum coagulans Forssk., Solanum cordatum Forssk., Solanum croatii D' Arcy & R.C.Keating, Solanum cyaneopurpureum De Wild., Solanum cymbalariifolium Chiov., Solanum dasyphyllum Schumach. & Thonn., Solanum dennekense Dammer, Solanum erythracanthum Bojer ex Dunal, Solanum forskalii Dunal, Solanum giganteum Jacq., Solanum glabratum Dunal, Solanum goetzei Dammer, Solanum hastifolium Hochst. ex Dunal, Solanum heinianum D' Arcy & R.C.Keating, Solanum humile Lam., Solanum inaequiradians Werderm., Solanum incanum L., Solanum jubae Bitter, Solanum lamprocarpum Bitter, Solanum lanzae J.-P.Lebrun & Stork, Solanum lichtensteinii Willd., Solanum lidii Sunding, Solanum linnaeanum Hepper & P.-M.L.Jaeger, Solanum litoraneum A.E.Gonç., Solanum macracanthum A.Rich., Solanum macrocarpon L., Solanum mahoriense D' Arcy & Rakot., Solanum malindiense Voronts., Solanum marginatum L.fil., Solanum mauense Bitter, Solanum melastomoides C.H.Wright, Solanum melongena L., Solanum myoxotrichum Baker, Solanum nigriviolaceum Bitter, Solanum pampaninii Chiov., Solanum phoxocarpum Voronts., Solanum polhillii Voronts., Solanum pyracanthos Lam., Solanum richardii (Dunal) Lemée, Solanum rigidum Lam., Solanum rubetorum Dunal, Solanum schimperianum Hochst., Solanum schliebenii Werderm., Solanum schumannianum Dammer, Solanum setaceum Dammer., Solanum sodomaeodes Kuntze, Solanum somalense Franch., Solanum stipitatostellatum Dammer, Solanum supinum Dunal, Solanum taitense Vatke, Solanum tettense Klotzsch, Solanum toliaraea D' Arcy & Rakot., Solanum tomentosum L., Solanum torreanum A.E.Gonç., Solanum umtuma Voronts. & S.Knapp, Solanum usambarense Bitter & Dammer, Solanum usaramense Dammer, Solanum vespertilio Aiton, Solanum virginianum L., Solanum zanzibarense Vatke)",
 "BasisOfRecord is one of (Specimen, Human Observation, Observation, Living Specimen, Machine Observation, Literature Occurrence)",
 "Geometry POLYGON((-25.4166666667 37.5833333333,63.5833333333 37.5833333333,63.5833333333 -47,-25.4166666667 -47,-25.4166666667 37.5833333333))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 16965 records from 162 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141468-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.78xgth
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Colpocyclops longispinosus (Monchenko, 1974)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Ukraine"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133636-230530130749713/datasets/export for details.
DOI: 10.15468/dl.asgquv
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liolaemus fittkaui Laurent, 1986"
 ]
}

 The dataset includes 11 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0370747-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mcnzqz
title: Occurrence Download

description: A dataset containing 571 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Caryota mitis Lour.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 571 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062256-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k867m7
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stelis exquisita Luer"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141474-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4u85a3
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Leptophilypnus panamensis (Meek & Hildebrand, 1916))"
 ]
}

 The dataset includes 41 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012998-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gbb5g8
title: Occurrence Download

description: A dataset containing 78481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Turdus amaurochalinus Cabanis, 1850"
 ]
}

 The dataset includes 78481 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012958-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ugx7n2
title: Occurrence Download

description: A dataset containing 58 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leopardus jacobitus (Cornalia, 1865)"
 ]
}

 The dataset includes 58 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0386876-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.69t5du
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stelis flacca Rchb.f."
 ]
}

 The dataset includes 36 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141491-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ffuef9
title: Occurrence Download

description: A dataset containing 1032 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Hypoxylon petriniae M.Stadler & J.Fourn.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1032 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0242941-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uesxxy
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.0138 21.1508,-89.96038 21.16887,-89.83192 21.20703,-89.73163 21.23904,-89.75449 21.27784,-89.89276 21.25409,-90.04144 21.20023,-90.0138 21.1508))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Synodus foetens (Linnaeus, 1766)"
 ]
}

 The dataset includes 15 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008299-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3muzwv
title: Occurrence Download

description: A dataset containing 555 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Theropithecus gelada (Rüppell, 1835)"
 ]
}

 The dataset includes 555 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008338-230918134249559/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pncyy8
title: Occurrence Download

description: A dataset containing 15642 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Viet Nam",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 15642 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0370750-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgzvhq
title: Occurrence Download

description: A dataset containing 539 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chamaedorea ernesti-augusti H.Wendl.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 539 records from 46 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0062262-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwfxd5
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Argiope lobata (Pallas, 1772)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Country is Ukraine"
 ]
}

 The dataset includes 137 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0133673-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10632540
title: Datasets for Integration into UAB UBRITE/PHARMALCHEMY Resource

description: This represents a semester project completed for INFO603 at the University of Alabama at Birmingham. This is a collection of datasets which were curated, either directly from the original source or from staged UAB-Cheaha copies, for integration into the UAB PharmAlchemy system.

Some data were used to complete a personal semester project to test the viability of using cell painting data to determine compound toxicities.

All data can be found within the UAB-Cheaha-UBRITE system at the following location: /data/project/ubrite/PharmAlchemy24/RomanFinalDeliverables/ . The attached table of contents describes where to find the datasets and code used to generate them.

Coversheets explaining each delivered dataset in more detail can be found within the UAB-Cheaha-UBRITE system at the following location: /data/project/ubrite/PharmAlchemy24/RomanFinalDeliverables/Coversheets/

 

Data was analyzed directly or indirectly from the following sources:



https://clinicaltrials.gov/

Drugbank: Knox C, Wilson M, Klinger CM, et al. DrugBank 6.0: the DrugBank Knowledgebase for 2024. Nucleic Acids Res. 2024 Jan 5;52(D1):D1265-D1275. doi: 10.1093/nar/gkad976.

Drug Repurposing Hub: Corsello, S., Bittker, J., Liu, Z. et al. The Drug Repurposing Hub: a next-generation drug library and information resource. Nat Med 23, 405–408 (2017). https://doi.org/10.1038/nm.4306

Disease Ontology: Schriml, L. M., Mitraka, E., Munro, J., Tauber, B., Schor, M., Nickle, L., … Greene, C. (2018). Human Disease Ontology 2018 update: classification, content and workflow expansion. Nucleic acids research, 47(D1), D955–D962. doi:10.1093/nar/gky1032

Mitotoxicity Data: Predicting the Mitochondrial Toxicity of Small Molecules: Insights from Mechanistic Assays and Cell Painting Data, Marina Garcia de Lomana, Paula Andrea Marin Zapata, and Floriane Montanari Chemical Research in Toxicology 2023 36 (7), 1107-1120 DOI: 10.1021/acs.chemrestox.3c00086

Cell Painting Data: Haghighi, M., Caicedo, J.C., Cimini, B.A. et al. High-dimensional gene expression and morphology profiles of cells across 28,000 genetic and chemical perturbations. Nat Methods 19, 1550–1557 (2022). https://doi.org/10.1038/s41592-022-01667-0

Online Mendelian Inheritance in Man: Online Mendelian Inheritance in Man, OMIM®. McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University (Baltimore, MD), 2024. World Wide Web URL: https://omim.org/

Therapeutic Target Database: Chen X, Ji ZL, Chen YZ. TTD: Therapeutic Target Database. Nucleic Acids Res. 2002 Jan 1;30(1):412-5. doi: 10.1093/nar/30.1.412. PMID: 11752352; PMCID: PMC99057.