cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18436276
title: SHNITSEL - Surface Hopping Nested Instances Training Set for Excited-state Learning

description: SHNITSEL-dynamic

The Surface Hopping Nested Instances Training Set for Excited-State Learning (SHNITSEL) is a comprehensive data repository designed to support the development and benchmarking of excited-state dynamics methods.

SHNITSEL-dynamic contains datasets with comprehensive surface hopping trajectory data of five organic molecules:



Alkenes: ethene (A01), propene (A02), 2-butene (A03)

Ring structures: 1,3-cyclohexadiene (R02)


The data are stored in xarray format using xarray.DataTree objects for efficient handling of multidimensional trajectory ensembles. Metadata such as units, electronic-structure method, charge, and number of electronic states are stored as attributes of the individual datasets within the tree.

The datasets contain key electronic-structure quantities for singlet and triplet states, including energies, nuclear forces, dipole moments, transition dipole moments, nonadiabatic couplings, and spin-orbit couplings, computed at the multireference ab initio level.

Two data representations are provided:





Stacked (#271,700 data points in total): for each molecule, the DataTree contains a single dataset in which all trajectories are stacked along a trajectory dimension.




Unstacked (#271,700 data points in total): for each molecule, the DataTree contains one dataset per trajectory, stored as individual leaves.



These complementary formats allow users to choose between trajectory-resolved and ensemble-level data representations depending on their analysis needs.
DOI: 10.15468/dl.47udx8
title: Occurrence Download

description: A dataset containing 81165 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Year is 2024",
 "Month is June"
 ]
}

 The dataset includes 81165 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002657-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6batxh
title: Occurrence Download

description: A dataset listing the 2789 species recorded in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-80.1681 9.19884,-80.19801 9.19532,-80.21796 9.18212,-80.21471 9.17112,-80.20979 9.17152,-80.21557 9.15403,-80.20741 9.14018,-80.20826 9.12553,-80.21647 9.11659,-80.20666 9.10599,-80.20016 9.08399,-80.20265 9.06813,-80.21826 9.04415,-80.21257 9.02745,-80.22568 9.02422,-80.21832 9.01892,-80.22818 9.00184,-80.22492 8.99532,-80.23474 8.99575,-80.24049 8.98722,-80.23562 8.96767,-80.22989 8.96603,-80.23155 8.95464,-80.22338 8.9477,-80.22343 8.92613,-80.24227 8.92006,-80.24558 8.90176,-80.23005 8.88951,-80.23661 8.88302,-80.23996 8.84843,-80.22973 8.84678,-80.21872 8.83088,-80.21795 8.8089,-80.17706 8.79376,-80.17259 8.78235,-80.15787 8.77906,-80.14851 8.75747,-80.12891 8.73789,-80.11676 8.68903,-80.1313 8.64295,-80.12651 8.63936,-80.12875 8.62617,-80.11743 8.62316,-80.09105 8.64437,-80.0834 8.64231,-80.07546 8.65384,-80.08453 8.66046,-80.08616 8.67886,-80.08037 8.69334,-80.08598 8.74022,-80.07599 8.76599,-80.09747 8.8146,-80.08556 8.83168,-80.07818 8.85947,-80.083 8.87983,-80.10706 8.89482,-80.09462 8.90939,-80.11107 8.92696,-80.11529 8.91991,-80.12151 8.92282,-80.11674 8.93804,-80.12124 8.94777,-80.107 8.95567,-80.10139 8.96646,-80.10929 8.97595,-80.10402 9.00504,-80.11688 9.02845,-80.11509 9.0431,-80.13058 9.07244,-80.1453 9.08061,-80.14772 9.09527,-80.15388 9.09,-80.16122 9.09978,-80.17596 9.10063,-80.17963 9.10918,-80.16731 9.12462,-80.17302 9.13359,-80.16886 9.16125,-80.1754 9.16981,-80.1681 9.19884))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 2789 records were derived from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002660-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17091708
title: tonyjurg/N1904addons: v1.0.0

description: Initial releases
DOI: 10.5281/zenodo.17091709
title: tonyjurg/N1904addons: v1.0.0

description: Initial releases
DOI: 10.25934/pr00012588.0
title: Available datapackage for study 'COVID Self-Testing Through Rapid Network Distribution (C-STRAND)'

description: Vivli is an independent, non-profit organization that has developed a global data-sharing and analytics platform to serve all elements of the international research community. Our mission is to promote, coordinate, and facilitate scientific sharing and reuse of clinical research data through the creation and implementation of a sustainable global data-sharing enterprise. The Vivli platform includes an independent data repository, in-depth search engine and a cloud-based, secure analytics platform.
DOI: 10.5281/zenodo.18436702
title: Cybernetic Systems Engineering of the Integrated Metabolic Apparatus: Reframing Metabolism as an Intelligent Information Processing System

description: This conceptual paper redefines the metabolic apparatus as a cybernetic system functioning as an intelligent biological operating system for information processing and adaptive response. Drawing on principles from systems biology, cybernetics, quantum biophysics, and computational modeling, we model metabolism as a spatiotemporal intelligence network that transforms environmental data into structural and energetic outputs. Through rigorous mathematical derivations, Python-based simulations using real-world datasets from HMDB and other sources, advanced sensitivity analyses including Sobol and Morris methods, Bayesian inference for parameter estimation, quantitative statistics, uncertainty quantification, and falsifiability assessments, we demonstrate the system's robustness and predictive power. The paper introduces a novel Hexagonal Reset Protocol as a proposed framework for metabolic re-engineering, supported by empirical data, high-fidelity modeling, and experimental validations from literature. Enhanced details on quantum effects in mitochondrial reactive oxygen species (ROS) production, with a deepened focus on the radical pair mechanism (RPM) including its detailed spin dynamics, mathematical proofs, quantitative statistics, and expanded applications in cancer therapy, anesthesiology, psychiatry, and synthetic cell engineering are incorporated. Gaps in prior models are addressed by incorporating multi-scale dynamics, stochastic elements, regulatory feedback loops, and deepened quantum mechanisms in mitochondrial dynamics, including radical pair mechanisms and electron tunneling influences on ROS partitioning.
DOI: 10.5281/zenodo.18436703
title: Cybernetic Systems Engineering of the Integrated Metabolic Apparatus: Reframing Metabolism as an Intelligent Information Processing System

description: This conceptual paper redefines the metabolic apparatus as a cybernetic system functioning as an intelligent biological operating system for information processing and adaptive response. Drawing on principles from systems biology, cybernetics, quantum biophysics, and computational modeling, we model metabolism as a spatiotemporal intelligence network that transforms environmental data into structural and energetic outputs. Through rigorous mathematical derivations, Python-based simulations using real-world datasets from HMDB and other sources, advanced sensitivity analyses including Sobol and Morris methods, Bayesian inference for parameter estimation, quantitative statistics, uncertainty quantification, and falsifiability assessments, we demonstrate the system's robustness and predictive power. The paper introduces a novel Hexagonal Reset Protocol as a proposed framework for metabolic re-engineering, supported by empirical data, high-fidelity modeling, and experimental validations from literature. Enhanced details on quantum effects in mitochondrial reactive oxygen species (ROS) production, with a deepened focus on the radical pair mechanism (RPM) including its detailed spin dynamics, mathematical proofs, quantitative statistics, and expanded applications in cancer therapy, anesthesiology, psychiatry, and synthetic cell engineering are incorporated. Gaps in prior models are addressed by incorporating multi-scale dynamics, stochastic elements, regulatory feedback loops, and deepened quantum mechanisms in mitochondrial dynamics, including radical pair mechanisms and electron tunneling influences on ROS partitioning.
DOI: 10.5281/zenodo.11205772
title: A temporally consistent spatial gradient in methane ebullition from a eutrophic lake

description: CH4 ebullition rates from lake Alstasjö (CH4Ebullition_NewCalculations.xlsx)

CH4 ebullition rates from lake Alstasjö related to sediment temperature (CH4_Ebullition_Site_SedT.csv)

CH4 and gas ebullition rates and sedment characteristics (CH4_GS_update6.csv)

Supplementary information SupportingInfo.pdf 

Oxygen levels at lake Alstasjö between 2020-2021 (O2_Alsta_DailyMean.csv)

Sediment dating from sediment cores collected at Alstasjö near bubble traps (CH4_SedimentDating.csv and 

CH4_SedimentDating_Cs.csv)

Results of lake Alstasjö thermal dynamics using lake analyzer (results_rLakeAnalyzer_Alsta.csv)

Water level and discharge from Alstasjö (WaterLevelvsDischarge.xlsx)

Chlorophyll-a and Total Phosphorus measured at lake main inlet
DOI: 10.5281/zenodo.18436690
title: A temporally consistent spatial gradient in methane ebullition from a eutrophic lake

description: CH4 ebullition rates from lake Alstasjö (CH4Ebullition_NewCalculations.xlsx)

CH4 ebullition rates from lake Alstasjö related to sediment temperature (CH4_Ebullition_Site_SedT.csv)

CH4 and gas ebullition rates and sedment characteristics (CH4_GS_update6.csv)

Supplementary information SupportingInfo.pdf 

Oxygen levels at lake Alstasjö between 2020-2021 (O2_Alsta_DailyMean.csv)

Sediment dating from sediment cores collected at Alstasjö near bubble traps (CH4_SedimentDating.csv and 

CH4_SedimentDating_Cs.csv)

Results of lake Alstasjö thermal dynamics using lake analyzer (results_rLakeAnalyzer_Alsta.csv)

Water level and discharge from Alstasjö (WaterLevelvsDischarge.xlsx)

Chlorophyll-a and Total Phosphorus measured at lake main inlet
DOI: 10.5281/zenodo.18436746
title: Towards high-resolution forecasting of tropical deforestation with deep learning
DOI: 10.34740/kaggle/dsv/14682129
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.5281/zenodo.18436751
title: Data_set_Duerochange

description: Data avality
DOI: 10.5281/zenodo.18436752
title: Data_set_Duerochange

description: Data avality
DOI: 10.5281/zenodo.17943519
title: Morphological Links Between Marine Snow and Bloom-forming Diatoms Datasets

description: This repository contains the datasets supporting the results presented in Morphological Links Between Marine Snow and Bloom-forming Datioms, submitted to Journal of Geophysical Research: Oceans. The study investigates how the morphology of phytoplankton species dictates the morphology of marine snow from which they form in a laboratory setting. 

These datasets include quantitative morphological parameters for phytoplankton species and their respective marine snow aggregates from the genera: Melosira, Chaetoceros, Skeletonema, Thalassionema, and Ditylum. Marine snow morphology was derived from image analysis and included size, shape, and structural metrics. Measurements are provided for monoculture and co-culture treatments spanning a gradient of initial species proportions.

All files are provided in open, machine-readable formats to facilitate reuse and reproducibility.
DOI: 10.5281/zenodo.17943520
title: Morphological Links Between Marine Snow and Bloom-forming Diatoms Datasets

description: This repository contains the datasets supporting the results presented in Morphological Links Between Marine Snow and Bloom-forming Datioms, submitted to Journal of Geophysical Research: Oceans. The study investigates how the morphology of phytoplankton species dictates the morphology of marine snow from which they form in a laboratory setting. 

These datasets include quantitative morphological parameters for phytoplankton species and their respective marine snow aggregates from the genera: Melosira, Chaetoceros, Skeletonema, Thalassionema, and Ditylum. Marine snow morphology was derived from image analysis and included size, shape, and structural metrics. Measurements are provided for monoculture and co-culture treatments spanning a gradient of initial species proportions.

All files are provided in open, machine-readable formats to facilitate reuse and reproducibility.
DOI: 10.34740/kaggle/dsv/14682146
title: Untargeted LC-MS/MS
DOI: 10.5281/zenodo.18436531
title: More than one million test smells

description: Dataset from the study on Test Smells in Dart/Flutter projects, and the sentiments of commits linked to these test smells.
DOI: 10.5281/zenodo.18436532
title: More than one million test smells

description: Dataset from the study on Test Smells in Dart/Flutter projects, and the sentiments of commits linked to these test smells.
DOI: 10.15468/sqzyaj
title: Kartlegging av spredning av fremmede bartrær

description: Observations of dispersal from plantations of two alien conifer species, Pinus contorta and Picea x lutzii, to natural habitats as part of the project "Kartlegging av spredning av fremmede bartrær".
DOI: 10.15468/dl.y6jacn
title: Occurrence Download

description: A dataset containing 115704 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Year is 2024",
 "Month is August"
 ]
}

 The dataset includes 115704 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002665-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wxqskk
title: Occurrence Download

description: A dataset containing 119929 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Year is 2024",
 "Month is July"
 ]
}

 The dataset includes 119929 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002664-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13140/rg.2.2.34389.90082
title: Enpo-meridianin-optimization: Reproducible Code Release
DOI: 10.15468/dl.bqr8bm
title: Occurrence Download

description: A dataset listing the 4142184 species recorded in GBIF matching the query:
{ }

 The dataset's 4142184 records were derived from 88580 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002667-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15151/esrf-es-2323719694
title: crystal structure determination of metalloproteins

description: Tyrosinases are metalloproteins that metabolise tyrosine and intermediate tyrosine substrates by means of redox reactions to produce melanin. We aim at solving the crystal structure of human tyrosinase at atomic resolution by X-ray anomalous diffraction of protein crystals.
DOI: 10.5281/zenodo.18436741
title: Surface Met Data
DOI: 10.5281/zenodo.18436740
title: Surface Met Data
DOI: 10.15468/dl.5bsnvw
title: Occurrence Download

description: A dataset containing 1896 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (MVZ Bird Collection (Arctos), WFVZ Bird Collections, MSB Bird Collection (Arctos), CAS Ornithology (ORN), UCLA Donald R. Dickey Bird and Mammal Collection, UWBM Ornithology Collection)",
 "TaxonKey is Megascops kennicottii"
 ]
}

 The dataset includes 1896 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002679-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.avhgen
title: Occurrence Download

description: A dataset containing 9646594 records in GBIF matching the query:
SELECT "gbifid", "taxonkey", "phylum", "class", "order", "eventdate", "datasetkey", "countrycode", "stateprovince", "decimallongitude", "decimallatitude" FROM occurrence WHERE ("hasgeospatialissues" = 'false') AND ("hascoordinate" = 'true') AND ("occurrencestatus" = 'PRESENT') AND NOT("basisofrecord" IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')) AND ("decimallatitude" &gt;= 41) AND ("decimallatitude" &lt; 42) AND ("decimallongitude" &gt;= -73) AND "decimallongitude" &lt; -72 AND ("year" &lt;= 2025)

 The dataset's 9646594 records were derived from 562 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002670-260129131611470/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/1vt8bc
title: Extended Data Table 2

description: A tab-separated ASCII machine readable version of Extended Data Table 2 in Zucker et al. 2022 (&lt;a href="https://doi.org/10.1038/s41586-021-04286-5"&gt;DOI: 10.1038/s41586-021-04286-5&lt;/a&gt;). 
&lt;br&gt;
The table contains a time sequence (in Myr) showing the (x,y,z) positions (in pc) of clusters as a function of time. If a cell appears blank, the cluster has not yet been born, with the first filled cell (from left to right) indicating the birth position of the cluster. All positions are given with respect to the Local Standard of Rest. Rows are color-coded by longitude as in Extended Data Table 1.
DOI: 10.7910/dvn/1xaql9
title: A14_27079.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/ad7c9d0f-c321-4979-803e-729cbd9f2c46'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/ad7c9d0f-c321-4979-803e-729cbd9f2c46
DOI: 10.7910/dvn/bskhuf
title: Replication Data for Omitted Variables, Countervailing Effects, and The Possibility of Overadjustment

description: The effect of conditioning on an additional covariate on confounding bias depends, in part, on covariates that are unobserved. We characterize the conditions under which the interaction between a covariate that is available for conditioning and one that is not can affect bias. When the confounding effects of two covariates, one of which is observed, are countervailing (in opposite directions), conditioning on the observed covariate can increase bias. We demonstrate this possibility analytically, and then show that these conditions are not rare in actual data. We also consider whether balance tests or sensitivity analysis can be used to justify the inclusion of an additional covariate. Our results indicate that neither provide protection against overadjustment.
DOI: 10.7910/dvn/kwpcej
title: A89_3259.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/3879b2c3-333e-fd53-221b-3b75abd10ccd'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/3879b2c3-333e-fd53-221b-3b75abd10ccd
DOI: 10.7910/dvn/b9xksr
title: Replication Data for: Spatial Heterogeneity Can Lead to Substantial Local Variations in COVID-19 Timing and Severity

description: Replication data for Spatial Heterogeneity Can Lead to Substantial Local Variations in COVID-19 Timing and Severity.
DOI: 10.7910/dvn/c40chp
title: Replication Data for: Ballot Box Representation: Spatial Voting and the Effects of Information in Direct Democracy Elections

description: In states and localities with direct democracy, citizens can advance their policy interests without the aid of elected officials. Research documenting citizens’ lack of political knowledge raises questions about their ability to do so. We conduct three studies during real-world direct democracy elections to determine whether citizens choose alternatives (the ballot proposal or status quo) that are closest to their ideological positions and whether political information improves this outcome. Using original surveys, our first two studies estimate citizens’ ideological positions and show that citizens regularly choose alternatives that are closest to these positions. Using a survey experiment, our third study indicates that political information (party cues, policy information, and spatial maps) further improves such spatial voting. These results demonstrate citizens’ capacity to advance their policy interests in direct democracy elections and identify conditions under which political information strengthens the relationship between citizens’ policy interests and choices about ballot propositions.
DOI: 10.7910/dvn/f1ggjc
title: A16_31464.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/e790fcf0-3d3b-4c5a-8ccc-426b1a184d2d'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/e790fcf0-3d3b-4c5a-8ccc-426b1a184d2d
DOI: 10.7910/dvn/1u54g9
title: A10_18096.JPG

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/dab5d92b-fbc7-42f1-bf67-f3b80447bb40'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/dab5d92b-fbc7-42f1-bf67-f3b80447bb40
DOI: 10.7910/dvn/1xdrp1
title: Influence of poverty concerns on demand for healthier foods: A field experiment in Mexico City

description: Dataset and Stata code for the paper "Influence of poverty concerns on demand for healthier foods: A field experiment in Mexico City"
DOI: 10.7910/dvn/29088
title: Literacy in Punjab, India 1901 to 1931

description: This decennial data set contains the number of male and female literates and their respective literacy percentages in the districts of Punjab between the years 1901 and 1931.
description: Excel, null
description: SPSS, null
description: This dataset currently lacks a robust description. I was unable to locate it on CHIA's Dataverse 3.0 instance. For additional information, please contact Siddharth Chandra at chandr45@msu.edu.;
DOI: 10.7910/dvn/c40k1u
title: Selected personality data from the SAPA-Project: 18aug2010 to 08dec2013

description: These data were collected to evaluate the structure of personality constructs in the temperament domain. In the context of modern personality theory, these constructs are typically construed in terms of the Big Five (Conscientiousness, Agreeableness, Neuroticism, Openness, and Extraversion) though several additional constructs were included here. Approximately 128,500 individuals were administered random subsets of items from the International Personality Item Pools using the Synthetic Aperture Personality Assessment method between August 18, 2010 and December 8, 2013. For part of this time (from August 18, 2010 until May 20, 2013), participants were administered 2 of 4 subsets (25 items each) of the 100-item IPIP Big Five Factor Markers. From May 20, 2013 until December 8, 2013, participants were randomly administered subsets of 373 IPIP items (including those in the IPIP 100). Throughout this period, participants were additionally asked to optionally provide responses on a range of demographic variables. The data are available in rdata format and are accompanied by documentation stored as a text file. Re-use potential include many types of structural and correlational analyses of personality.

It should be noted that the latter administration protocol used to collect these data (373 items) was subsequently replaced with the protocol used for three other samples beginning on December 8, 2013 and lasting through February 7, 2017.
DOI: 10.7910/dvn/1whtnc
title: A16_32848.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/fb1ae59a-3afe-417e-a3bc-d52e8fcab939'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/fb1ae59a-3afe-417e-a3bc-d52e8fcab939