cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.mbx5ay
title: Occurrence Download

description: A dataset containing 1886 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (Africa, Antarctica, Asia, Oceania, Europe, North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Coryphaena Linnaeus, 1758"
 ]
}

 The dataset includes 1886 records from 123 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033655-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28025375
title: Raw data for hand and arm dysfunction following hemodialysis access placement

description: BACKGROUND: Patients with chronic or end-stage kidney disease (CKD/ESKD) often experience hand and arm dysfunction (HAD) following hemodialysis access placement, adversely affecting clinical outcomes and quality of life. Despite its prevalence, the underlying mechanisms of hemodialysis access-associated HAD remain largely unexplored. METHODS: We conducted a longitudinal study involving 30 patients with CKD/ESKD. Functional assessments, including grip strength, hand pressure, dexterity, sensory tests, and patient-reported HAD scores, were performed preoperatively and six weeks postoperatively. Brachioradialis muscle biopsies were analyzed for morphology, mitochondrial function, and transcriptomic profiles. Routine follow-up assessments were performed to determine functional hemoaccess success. RESULTS: Six weeks post-surgery, patients exhibited significant functional decline in the access limb. Postoperative grip strength declined by approximately 15% (P=0.0015), finger pressure decreased by ~30 mmHg (P&lt;0.0001), and the perceived HAD score increased significantly (P=0.0450) compared to the preoperative values. In contrast, dexterity and digital sensation remained unchanged postoperatively. Muscle morphology analysis revealed an ~12% reduction in mean myofiber cross-sectional area (P=0.0340) which was significantly correlated with grip strength (P=0.0425). Postoperative assessment uncovered an increase in mitochondrial respiration and content, which inversely correlated with finger pressure (P=0.0423). However, net oxidative phosphorylation and antioxidant capacity remained unchanged. RNA sequencing revealed the most significant postoperative alterations in genes related to myofiber development. Notably, patients with HAD exhibited a ~15% higher rate of unassisted dialysis access failure compared to those without HAD, suggesting a possible link between HAD and access failure. CONCLUSIONS: This study revealed that approximately 70% of patients undergoing hemodialysis access placement experience HAD, with significant functional impairments linked to altered myofiber morphology, mitochondrial content, and transcriptomic profiles in individuals with CKD/ESKD. Importantly, patients with HAD had a higher rate of access failure, highlighting the clinical importance of early recognition and intervention to address HAD in patients undergoing hemodialysis access surgery.
DOI: 10.6084/m9.figshare.28025375.v1
title: Raw data for hand and arm dysfunction following hemodialysis access placement

description: BACKGROUND: Patients with chronic or end-stage kidney disease (CKD/ESKD) often experience hand and arm dysfunction (HAD) following hemodialysis access placement, adversely affecting clinical outcomes and quality of life. Despite its prevalence, the underlying mechanisms of hemodialysis access-associated HAD remain largely unexplored. METHODS: We conducted a longitudinal study involving 30 patients with CKD/ESKD. Functional assessments, including grip strength, hand pressure, dexterity, sensory tests, and patient-reported HAD scores, were performed preoperatively and six weeks postoperatively. Brachioradialis muscle biopsies were analyzed for morphology, mitochondrial function, and transcriptomic profiles. Routine follow-up assessments were performed to determine functional hemoaccess success. RESULTS: Six weeks post-surgery, patients exhibited significant functional decline in the access limb. Postoperative grip strength declined by approximately 15% (P=0.0015), finger pressure decreased by ~30 mmHg (P&lt;0.0001), and the perceived HAD score increased significantly (P=0.0450) compared to the preoperative values. In contrast, dexterity and digital sensation remained unchanged postoperatively. Muscle morphology analysis revealed an ~12% reduction in mean myofiber cross-sectional area (P=0.0340) which was significantly correlated with grip strength (P=0.0425). Postoperative assessment uncovered an increase in mitochondrial respiration and content, which inversely correlated with finger pressure (P=0.0423). However, net oxidative phosphorylation and antioxidant capacity remained unchanged. RNA sequencing revealed the most significant postoperative alterations in genes related to myofiber development. Notably, patients with HAD exhibited a ~15% higher rate of unassisted dialysis access failure compared to those without HAD, suggesting a possible link between HAD and access failure. CONCLUSIONS: This study revealed that approximately 70% of patients undergoing hemodialysis access placement experience HAD, with significant functional impairments linked to altered myofiber morphology, mitochondrial content, and transcriptomic profiles in individuals with CKD/ESKD. Importantly, patients with HAD had a higher rate of access failure, highlighting the clinical importance of early recognition and intervention to address HAD in patients undergoing hemodialysis access surgery.
DOI: 10.15468/dl.uxk4r3
title: Occurrence Download

description: A dataset containing 3336 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Eriocaulon aquaticum (Hill) Druce"
 ]
}

 The dataset includes 3336 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033654-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9hzy97
title: Occurrence Download

description: A dataset containing 6626 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Gaultheria hispidula (L.) Muhl. ex Bigelow"
 ]
}

 The dataset includes 6626 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033657-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmw2vh
title: Occurrence Download

description: A dataset containing 14219 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes dorsalis (Meigen, 1830)"
 ]
}

 The dataset includes 14219 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033658-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25505/fiz.icsd.cc2lx14q
title: CSD 2410223: Experimental Crystal Structure Determination

description: Related Article: Abhik Bordoloi|2024|ICSD Communication|||
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.uc5gcj
title: Occurrence Download

description: A dataset containing 3561 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes excrucians (Walker, 1856)"
 ]
}

 The dataset includes 3561 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033662-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25378/janelia.24263116
title: Manual organelle segmentations (crop368) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, mitochondrial ribosome, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, peroxisome membrane, lipid droplet, peroxisome, peroxisome lumen, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop368<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<b>Annotated data dimensions (µm)</b>: 1.6 x 1.6 x 1.6 (x, y, z)<b>Annotated data offset (nm)</b>: 147998 x 117838 x 266398 (x, y, z)<b>Classes annotated</b>: mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, mitochondrial ribosome, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, peroxisome membrane, lipid droplet, peroxisome, peroxisome lumen, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<b>Dataset URL</b>: https://data.janelia.org/AIvPq0<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.25378/janelia.24263116.v1
title: Manual organelle segmentations (crop368) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver acinus (jrc_mus-liver-zon-2)

description: <b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, mitochondrial ribosome, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, peroxisome membrane, lipid droplet, peroxisome, peroxisome lumen, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective in jrc_mus-liver-zon-2 using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop368<b>Primary Annotator</b>: Diana Ramirez<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 4 x 4 x 4 (x, y, z)<b>Annotated data dimensions (µm)</b>: 1.6 x 1.6 x 1.6 (x, y, z)<b>Annotated data offset (nm)</b>: 147998 x 117838 x 266398 (x, y, z)<b>Classes annotated</b>: mitochondrial membrane, mitochondrial lumen, vesicle membrane, endosome membrane, vesicle lumen, mitochondrial ribosome, endoplasmic reticulum lumen, endoplasmic reticulum membrane, lipid droplet lumen, lipid droplet membrane, endosome lumen, cytosol, endosome, vesicle, peroxisome membrane, lipid droplet, peroxisome, peroxisome lumen, mitochondria, endoplasmic reticulum, cell, endoplasmic reticulum membrane collective<b>Dataset URL</b>: https://data.janelia.org/AIvPq0<b>Source (EM) dataset ID</b>: jrc_mus-liver-zon-2<b>Source (EM) voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 210 x 155.73 x 426.69 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24135486<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-zon-2<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.
DOI: 10.15468/dl.vmh373
title: Occurrence Download

description: A dataset containing 3916 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Utricularia cornuta Michx."
 ]
}

 The dataset includes 3916 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033661-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5519/qd.nnbvo6ud
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (10 records)
DOI: 10.15468/dl.7eb5hz
title: Occurrence Download

description: A dataset containing 39308 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aedes albopictus (Skuse, 1894)",
 "Country is United States of America",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 39308 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033660-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14451512
title: SEASONAL DEVELOPMENT OF THE ALGOFLORA OF THE SOUTH FERGANA CHANNEL IN 2023-2024
DOI: 10.5281/zenodo.14451513
title: SEASONAL DEVELOPMENT OF THE ALGOFLORA OF THE SOUTH FERGANA CHANNEL IN 2023-2024
DOI: 10.15468/dl.p9gerc
title: Occurrence Download

description: A dataset containing 994 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes fulvus (Wiedemann, 1828)"
 ]
}

 The dataset includes 994 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033663-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwj2xn
title: Occurrence Download

description: A dataset containing 10955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chamaedaphne calyculata (L.) Moench"
 ]
}

 The dataset includes 10955 records from 131 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033664-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h3ys3z
title: Occurrence Download

description: A dataset containing 7979 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Comarum palustre L."
 ]
}

 The dataset includes 7979 records from 133 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033666-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uaxh2u
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes furcifer Edwards, 1913"
 ]
}

 The dataset includes 10 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033665-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ebdhnx
title: Occurrence Download

description: A dataset containing 11927 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Iris versicolor L."
 ]
}

 The dataset includes 11927 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033667-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x7fueq
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Centris violacea Lepeletier, 1841"
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033668-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3p5smq
title: Occurrence Download

description: A dataset containing 1618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Aedes geniculatus (Olivier, 1791)"
 ]
}

 The dataset includes 1618 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033669-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zqu3f
title: Occurrence Download

description: A dataset containing 5252 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lycopus uniflorus Michx."
 ]
}

 The dataset includes 5252 records from 124 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033670-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13886858
title: The coding domain sequences and translated protein sequences annotated from the chromosome-level genome assembly of the Phthonandria atrilineata

description: The mulberry pyralid, Phthonandria atrilineata, plays a pivotal role in the destruction of mulberry trees (Morus spp.). Despite its ecological and economic significance, knowledge about the genomic background of P. atrilineata remains limited. Here, we report a chromosome-level reference genome of P. atrilineata, with a total size of 336.55 Mb, containing 15,026 protein-coding genes and 39.72% repeat sequences. Here in this project, we upload the genome assembly, with anchored choromsomes and unplaced contigs, along with the gff3 files of gene annotations and repeat elements. The cds and protein sequences were also added.
DOI: 10.5281/zenodo.13886859
title: Genome assembly and GFF3 genomic structure location file for the chromosome-level genome assembly of the Phthonandria atrilineata

description: The mulberry pyralid, Phthonandria atrilineata, plays a pivotal role in the destruction of mulberry trees (Morus spp.). Despite its ecological and economic significance, knowledge about the genomic background of P. atrilineata remains limited. Here, we report a chromosome-level reference genome of P. atrilineata, with a total size of 336.55 Mb, containing 15,026 protein-coding genes and 39.72% repeat sequences. Here in this project, we upload the genome assembly, with anchored choromsomes and unplaced contigs, along with the gff3 files of gene annotations and repeat elements.
DOI: 10.5281/zenodo.14451491
title: The coding domain sequences and translated protein sequences annotated from the chromosome-level genome assembly of the Phthonandria atrilineata

description: The mulberry pyralid, Phthonandria atrilineata, plays a pivotal role in the destruction of mulberry trees (Morus spp.). Despite its ecological and economic significance, knowledge about the genomic background of P. atrilineata remains limited. Here, we report a chromosome-level reference genome of P. atrilineata, with a total size of 336.55 Mb, containing 15,026 protein-coding genes and 39.72% repeat sequences. Here in this project, we upload the genome assembly, with anchored choromsomes and unplaced contigs, along with the gff3 files of gene annotations and repeat elements. The cds and protein sequences were also added.
DOI: 10.5281/zenodo.14451587
title: BOLALARNING BILISH FAOLIYATLARINI RIVOJLANTIRISHDA NEYROGIMNASTIK MASHQLARNING O'RNI
DOI: 10.5281/zenodo.14451588
title: BOLALARNING BILISH FAOLIYATLARINI RIVOJLANTIRISHDA NEYROGIMNASTIK MASHQLARNING O'RNI