cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9987902
title: Needle-shaped amyloid deposition in rat mammary gland: evidence of a novel amyloid fibril protein

description: Amyloidosis is an extremely rare event in rats. In this study, we report that lipopolysaccharide binding protein (LBP) is the most likely amyloidogenic protein in rat mammary amyloidosis. Histologically, corpora amylacea (CA) and stromal amyloid (SA) were observed in rat mammary glands, and needle-shaped amyloid (NA) was also observed on the surface or gap of CA and SA. Following surveillance in aged rats, NA was observed in 62% of mammary tumours, 25% of male mammary glands and 83% of female mammary glands. Proteomic analysis showed that lactadherin was a major constitutive protein of CA and SA, and both were positive following immunohistochemistry with anti-lactadherin antibodies. In the same analysis, LBP was detected as a prime candidate protein in NA, and NA was positive following immunohistochemistry and immunoelectron microscopy with anti-LBP antibody. Furthermore, synthetic peptides derived from rat LBP formed amyloid fibrils <i>in vitro</i>. Overall, these results provide evidence that LBP is an amyloid precursor protein of NA in rat mammary glands.
DOI: 10.6084/m9.figshare.9987902.v1
title: Needle-shaped amyloid deposition in rat mammary gland: evidence of a novel amyloid fibril protein

description: Amyloidosis is an extremely rare event in rats. In this study, we report that lipopolysaccharide binding protein (LBP) is the most likely amyloidogenic protein in rat mammary amyloidosis. Histologically, corpora amylacea (CA) and stromal amyloid (SA) were observed in rat mammary glands, and needle-shaped amyloid (NA) was also observed on the surface or gap of CA and SA. Following surveillance in aged rats, NA was observed in 62% of mammary tumours, 25% of male mammary glands and 83% of female mammary glands. Proteomic analysis showed that lactadherin was a major constitutive protein of CA and SA, and both were positive following immunohistochemistry with anti-lactadherin antibodies. In the same analysis, LBP was detected as a prime candidate protein in NA, and NA was positive following immunohistochemistry and immunoelectron microscopy with anti-LBP antibody. Furthermore, synthetic peptides derived from rat LBP formed amyloid fibrils <i>in vitro</i>. Overall, these results provide evidence that LBP is an amyloid precursor protein of NA in rat mammary glands.
DOI: 10.6084/m9.figshare.9987959.v1
title: Data supporting the results in the paper: Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. In press. "Multi-stemming and size enhance dominant tree survival in a frequently typhoon-disturbed forest". Journal of Vegetation Science.

description: Data supporting the results in the paper:Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. <i>In press.</i> "Multi-stemming and size enhance dominant tree survival in a frequently typhoon-disturbed forest". <i>Journal of Vegetation Science</i>. https://doi.org/10.1111/jvs.12858<br>
DOI: 10.6084/m9.figshare.9987899
title: Identification and Evaluation of Items for Vitreoretinal Diseases Quality of Life Item Banks

description: <b><i>Purpose</i></b>: We are developing item banks assessing the impact of retinal and vitreoretinal diseases (excluding age-related macular degeneration, diabetic retinopathy, and retinal detachment, covered elsewhere) on quality of life (QoL) for adults. This study outlines the first two phases of the multi-stage process: content development and item evaluation. <b><i>Methods</i></b>: We grouped retinal and vitreoretinal diseases into hereditary and acquired. Development of the item banks involved two phases: item identification and item evaluation. The items were extracted from three sources: (1) 17 pre-existing PRO instruments, (2) 4 qualitative studies and (3) 79 semi-structured interviews. Item evaluation involved three stages namely, binning (grouping) and winnowing (reduction), expert panel opinion and cognitive interviews. <b><i>Results</i></b>: The item identification phase yielded 1,217 items. After three sessions of binning and winnowing, items were reduced to a minimally representative set (<i>n</i> = 411) across nine QoL domains namely, activity limitation, emotional, social, health concerns, symptoms, economic, mobility, convenience, and coping. The hereditary group had a total of 345 items and the acquired group had a total of 257 items. After 23 cognitive interviews items were amended for hereditary diseases resulting in a final set of 345 items and 3 items were amended for acquired diseases, resulting in a final set of 254 items. Overall across nine domains 189 items were common to hereditary and acquired retinal and vitreoretinal diseases. <b><i>Conclusion</i></b>: As most of the items were unique to hereditary versus acquired retinal and vitreoretinal disease groups separate item banks are required to capture the QoL impacts for hereditary and acquired retinal and vitreoretinal diseases.
DOI: 10.6084/m9.figshare.9987899.v1
title: Identification and Evaluation of Items for Vitreoretinal Diseases Quality of Life Item Banks

description: <b><i>Purpose</i></b>: We are developing item banks assessing the impact of retinal and vitreoretinal diseases (excluding age-related macular degeneration, diabetic retinopathy, and retinal detachment, covered elsewhere) on quality of life (QoL) for adults. This study outlines the first two phases of the multi-stage process: content development and item evaluation. <b><i>Methods</i></b>: We grouped retinal and vitreoretinal diseases into hereditary and acquired. Development of the item banks involved two phases: item identification and item evaluation. The items were extracted from three sources: (1) 17 pre-existing PRO instruments, (2) 4 qualitative studies and (3) 79 semi-structured interviews. Item evaluation involved three stages namely, binning (grouping) and winnowing (reduction), expert panel opinion and cognitive interviews. <b><i>Results</i></b>: The item identification phase yielded 1,217 items. After three sessions of binning and winnowing, items were reduced to a minimally representative set (<i>n</i> = 411) across nine QoL domains namely, activity limitation, emotional, social, health concerns, symptoms, economic, mobility, convenience, and coping. The hereditary group had a total of 345 items and the acquired group had a total of 257 items. After 23 cognitive interviews items were amended for hereditary diseases resulting in a final set of 345 items and 3 items were amended for acquired diseases, resulting in a final set of 254 items. Overall across nine domains 189 items were common to hereditary and acquired retinal and vitreoretinal diseases. <b><i>Conclusion</i></b>: As most of the items were unique to hereditary versus acquired retinal and vitreoretinal disease groups separate item banks are required to capture the QoL impacts for hereditary and acquired retinal and vitreoretinal diseases.
DOI: 10.6084/m9.figshare.9987959.v3
title: Data supporting the results in the paper: Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. 2020. "Multi-stemming and size enhance survival of dominant tree species in a frequently typhoon-disturbed forest". Journal of Vegetation Science 31(3):429-39.

description: Data supporting the results in the paper:Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. 2020<i>.</i> "Multi-stemming and size enhance survival of dominant tree species in a frequently typhoon-disturbed forest". <i>Journal of Vegetation Science</i> 31(3):429-39 (https://doi.org/10.1111/jvs.12858).<br>
DOI: 10.6084/m9.figshare.9987959.v2
title: Data supporting the results in the paper: Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. In press. "Multi-stemming and size enhance survival of dominant tree species in a frequently typhoon-disturbed forest". Journal of Vegetation Science.

description: Data supporting the results in the paper:Sheng-Hsin Su, Biing T. Guan, Chia-Hao Chang-Yang, I-Fang Sun, Hsiang-Hua Wang, Chang-Fu Hsieh. <i>In press.</i> "Multi-stemming and size enhance survival of dominant tree species in a frequently typhoon-disturbed forest". <i>Journal of Vegetation Science</i>. https://doi.org/10.1111/jvs.12858<br>
DOI: 10.6084/m9.figshare.9987797
title: Original Data.xlsx

description: Frontiers in Physiology
DOI: 10.6084/m9.figshare.9987527
title: MOESM5 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 5. Seroprevalence of FMD based on samples tested with an NSP indirect ELISA submitted in 2014from different provinces of Afghanistan.
DOI: 10.6084/m9.figshare.9987527.v1
title: MOESM5 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 5. Seroprevalence of FMD based on samples tested with an NSP indirect ELISA submitted in 2014from different provinces of Afghanistan.
DOI: 10.6084/m9.figshare.9987530
title: MOESM6 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 6. Seroprevalence based on an NSP indirect ELISA for samples collected in 2015 from different provinces in Afghanistan.
DOI: 10.6084/m9.figshare.9987533
title: MOESM7 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 7. Distribution of clinically diagnosed cases of FMD in cattle, sheep and goats in different provinces of Afghanistan in 2016.
DOI: 10.6084/m9.figshare.9987524
title: MOESM4 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 4. Seroprevalence based on an NSP indirect ELISA for samples submitted in 2013 from different provinces in Afghanistan.
DOI: 10.6084/m9.figshare.9987530.v1
title: MOESM6 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 6. Seroprevalence based on an NSP indirect ELISA for samples collected in 2015 from different provinces in Afghanistan.
DOI: 10.6084/m9.figshare.9987533.v1
title: MOESM7 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 7. Distribution of clinically diagnosed cases of FMD in cattle, sheep and goats in different provinces of Afghanistan in 2016.
DOI: 10.6084/m9.figshare.9987518
title: MOESM3 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 3. Seroprevalence to FMD in different zones and provinces based on surveillance undertaken in 2011.
DOI: 10.6084/m9.figshare.9987524.v1
title: MOESM4 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 4. Seroprevalence based on an NSP indirect ELISA for samples submitted in 2013 from different provinces in Afghanistan.
DOI: 10.6084/m9.figshare.9987518.v1
title: MOESM3 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 3. Seroprevalence to FMD in different zones and provinces based on surveillance undertaken in 2011.
DOI: 10.6084/m9.figshare.9987512
title: MOESM2 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 2. Influence of zone and province on percentage of FMD positive tissue samples collected from cattle with clinical disease in 2010.
DOI: 10.6084/m9.figshare.9987506
title: MOESM1 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 1. Effect of zone on seroprevalence of FMD based on samples collected in 2009 and tested with an NSP indirect ELISA.
DOI: 10.6084/m9.figshare.9987512.v1
title: MOESM2 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 2. Influence of zone and province on percentage of FMD positive tissue samples collected from cattle with clinical disease in 2010.
DOI: 10.6084/m9.figshare.9987506.v1
title: MOESM1 of History and epidemiology of foot-and-mouth disease in Afghanistan: a retrospective study

description: Additional file 1. Effect of zone on seroprevalence of FMD based on samples collected in 2009 and tested with an NSP indirect ELISA.
DOI: 10.6084/m9.figshare.9987458
title: MOESM3 of Distinct molecular etiologies of male and female hepatocellular carcinoma

description: Additional file 3: Tables S1-S19.Â
DOI: 10.6084/m9.figshare.9987458.v1
title: MOESM3 of Distinct molecular etiologies of male and female hepatocellular carcinoma

description: Additional file 3: Tables S1-S19.Â
DOI: 10.6084/m9.figshare.9987425
title: MOESM2 of Activity of crustal faults and the Xolapa sliver motion in Guerrero–Oaxaca forearc of Mexico, from seismic data

description: Additional file 2. Global CMT compilation. Selected thrust events from the Global CMT catalog for 1976–2016 for the events with double couple percentage DC ≥ 80%.
DOI: 10.6084/m9.figshare.9987422
title: MOESM1 of Activity of crustal faults and the Xolapa sliver motion in Guerreroâ Oaxaca forearc of Mexico, from seismic data

description: Additional file 1. Local catalog. Thrust events compiled from publications of Pacheco and Singh (2010) (1), Yamamoto et al. (2013) (2), Pacheco et al. (2005) (3) and from the catalog of the SSN (4).
DOI: 10.6084/m9.figshare.9987425.v1
title: MOESM2 of Activity of crustal faults and the Xolapa sliver motion in Guerrero–Oaxaca forearc of Mexico, from seismic data

description: Additional file 2. Global CMT compilation. Selected thrust events from the Global CMT catalog for 1976–2016 for the events with double couple percentage DC ≥ 80%.
DOI: 10.6084/m9.figshare.9987422.v1
title: MOESM1 of Activity of crustal faults and the Xolapa sliver motion in Guerreroâ Oaxaca forearc of Mexico, from seismic data

description: Additional file 1. Local catalog. Thrust events compiled from publications of Pacheco and Singh (2010) (1), Yamamoto et al. (2013) (2), Pacheco et al. (2005) (3) and from the catalog of the SSN (4).
DOI: 10.6084/m9.figshare.9987389
title: MOESM6 of Signatures of selection for resistance to Haemonchus contortus in sheep and goats

description: Additional file 6: Table S5. Gene table
DOI: 10.6084/m9.figshare.9987389.v1
title: MOESM6 of Signatures of selection for resistance to Haemonchus contortus in sheep and goats

description: Additional file 6: Table S5. Gene table
DOI: 10.6084/m9.figshare.9987326
title: MOESM4 of Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy

description: Additional file 4. DataÂ 2.
DOI: 10.6084/m9.figshare.9987317
title: MOESM3 of Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy

description: Additional file 3. DataÂ 1.
DOI: 10.6084/m9.figshare.9987317.v1
title: MOESM3 of Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy

description: Additional file 3. DataÂ 1.
DOI: 10.6084/m9.figshare.9987326.v1
title: MOESM4 of Muscle regulates mTOR dependent axonal local translation in motor neurons via CTRP3 secretion: implications for a neuromuscular disorder, spinal muscular atrophy

description: Additional file 4. DataÂ 2.
DOI: 10.6084/m9.figshare.9987281
title: MOESM8 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 8. Consensus QTL maps for each of the 34 traits built by projection onto the consensus map of QTLs from the selected 47 QTL studies. Each map is provided in a separate sheet and for each the whole and short QTL name, as well the genetic position information and physical position information obtained through marker anchoring of the map to the genome are given. Details about QTL short names abbreviations are in Additional file 2.
DOI: 10.6084/m9.figshare.9987281.v1
title: MOESM8 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 8. Consensus QTL maps for each of the 34 traits built by projection onto the consensus map of QTLs from the selected 47 QTL studies. Each map is provided in a separate sheet and for each the whole and short QTL name, as well the genetic position information and physical position information obtained through marker anchoring of the map to the genome are given. Details about QTL short names abbreviations are in Additional file 2.
DOI: 10.6084/m9.figshare.9987269
title: MOESM6 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 6. Number of maps used for the construction of each consensus linkage group.
DOI: 10.6084/m9.figshare.9987260
title: MOESM4 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 4. The grape consensus genetic map built from 39 grape linkage maps. The table includes physical marker position if available, for anchoring to the grapevine genome assembly.
DOI: 10.6084/m9.figshare.9987260.v1
title: MOESM4 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 4. The grape consensus genetic map built from 39 grape linkage maps. The table includes physical marker position if available, for anchoring to the grapevine genome assembly.
DOI: 10.6084/m9.figshare.9987245
title: MOESM2 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 2. List of phenotypes scored in the selected QTL studies, grouped according to the study. The list includes the original QTL short name attributed in the reference to each phenotype, as well as a short description. The main trait for which the phenotype was considered to be a descriptor and the trait category are also indicated for each phenotype.
DOI: 10.6084/m9.figshare.9987245.v1
title: MOESM2 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 2. List of phenotypes scored in the selected QTL studies, grouped according to the study. The list includes the original QTL short name attributed in the reference to each phenotype, as well as a short description. The main trait for which the phenotype was considered to be a descriptor and the trait category are also indicated for each phenotype.
DOI: 10.6084/m9.figshare.9987236
title: MOESM1 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 1. List of publications including grapevine QTL studies selected as suitable for integration of QTLs data. For each publication are reported reference of the genetic map used in the original publication, details about the cross population used for QTL mapping and the total number and categories of QTLs included in the analysis.
DOI: 10.6084/m9.figshare.9987230
title: MOESM19 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 19. Phenotypic scoring details for selected veraison QTLs used in the work. Details about the phenotypic scoring have been collected from original publications and reported here alongside with QTL short name, QTL description and the reference publication.
DOI: 10.6084/m9.figshare.9987233
title: MOESM1 of DNA methylomes and transcriptomes analysis reveal implication of host DNA methylation machinery in BmNPV proliferation in Bombyx mori

description: Additional file 1: Table S1. Summary of the sequenced reads. Table S2. Differentially expressed genes of silkworm midguts upon BmNPV infection. Table S3. Differential DNA methylation regions of silkworm midguts upon BmNPV infection. Table S4. Sequences of primers for qRT-PCR and BS-PCR.
DOI: 10.6084/m9.figshare.9987227
title: MOESM18 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 18. List of 272 genes selected by integrating the list of transcriptomic candidates and positional information from the meta-QTL analysis. Positional information (Chr and position) derived by map anchoring to the genome, functional annotation and information about the transcriptomic study in which each candidate was first reported are included for each selected candidate in the table. TableÂ 5 represents a subset of this table, including, among these candidates, those involved in signalling, development or regulation of gene expression.
DOI: 10.6084/m9.figshare.9987230.v1
title: MOESM19 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 19. Phenotypic scoring details for selected veraison QTLs used in the work. Details about the phenotypic scoring have been collected from original publications and reported here alongside with QTL short name, QTL description and the reference publication.
DOI: 10.6084/m9.figshare.9987233.v1
title: MOESM1 of DNA methylomes and transcriptomes analysis reveal implication of host DNA methylation machinery in BmNPV proliferation in Bombyx mori

description: Additional file 1: Table S1. Summary of the sequenced reads. Table S2. Differentially expressed genes of silkworm midguts upon BmNPV infection. Table S3. Differential DNA methylation regions of silkworm midguts upon BmNPV infection. Table S4. Sequences of primers for qRT-PCR and BS-PCR.
DOI: 10.6084/m9.figshare.9987236.v1
title: MOESM1 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 1. List of publications including grapevine QTL studies selected as suitable for integration of QTLs data. For each publication are reported reference of the genetic map used in the original publication, details about the cross population used for QTL mapping and the total number and categories of QTLs included in the analysis.
DOI: 10.6084/m9.figshare.9987218
title: MOESM17 of Selection of candidate genes controlling veraison time in grapevine through integration of meta-QTL and transcriptomic data

description: Additional file 17. Whole list of transcriptomic candidates derived by studies of expression profiles along berry development [44], [46], [48] including positional information and functional annotation. Information about the original study in which they were selected and about their eventual prioritization through network analysis of expression profiles (“switch genes”) or selection as “biomarkers” according to profile analysis in original studies is included.
DOI: 10.6084/m9.figshare.9987221
title: MOESM1 of Identification of differentially expressed circRNAs and a novel hsa_circ_0000144 that promote tumor growth in gastric cancer

description: Additional file 1. KEGG pathway analysis of genes differentially expressed circRNAs targeting.