cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12000666.v1
title: Decoy Receptor 3 as a Biomarker for Diagnosis of Bacterial Sepsis

description: <b>Subjects and Methods</b>: The present study included 30 patients and 15 healthy controls, systemic inflammatory response syndrome (SIRS) group. Serum DcR3 level was measured by quantitative<b> </b>enzyme-linked immunosorbent assay (ELISA), sepsis was identified by positive blood culture results, SIRS group were identified by negative blood culture or negative 16S ribosomal DNA (rDNA) polymerase chain reaction (PCR) results. Receiver operating curve (ROC) analysis was performed for DcR3 and C reactive protein (CRP) alone and in combination. <b>Results</b>: The serum DcR3 level was significantly higher in sepsis patients than SIRS patients and healthy controls (5.21 ± 2.28 ng/mL, 1.96 ± 0.90 ng/mL, and 0.95 ± 0.79 ng/mL, respectively, <i>p</i> &lt; 0.001). The ROC area under the curve (AUC) of DcR3 for sepsis vs. SIRS was 0.920 at a cutoff of 2.4 ng/mL, with a sensitivity and specificity of 93.33% and 86.67%, respectively. The AUC of combined positive DcR3 and positive CRP for sepsis vs. SIRS was 0.967 with a sensitivity and specificity of 93.33% and 100%, respectively. <b>Conclusion</b>: Our study showed that DcR3, alone or in combination with other biomarkers, is promising for distinguishing sepsis from SIRS patients.
DOI: 10.6084/m9.figshare.12000615
title: Age-related pharmacodynamics in a bumblebee-microsporidian system mirror similar patterns in vertebrates.

description: Database relating to Folly et al. 2020 Age-related pharmacodynamics in a bumblebee-microsporidian system mirror similar patterns in vertebrates. Contained are the parasite counts and groups for model generation.
DOI: 10.6084/m9.figshare.12000591
title: Supplementary Material for: Relapse of Nephrotic Syndrome after Adrenocorticotrophic Hormone-Induced Remission: Implications of Adrenocorticotrophic Hormone Antibodies

description: <b><i>Background:</i></b> Prolonged use of corticosteroids continues to be the mainstay in the management of most proteinuric glomerulopathies, but is limited by extensive side effects. Alternative medications such as adrenocorticotrophic hormone (ACTH) have been recently used to treat refractory glomerulopathies and have shown superior outcomes when compared with steroids. However, the clinical responsiveness to ACTH therapy varies considerably with a number of patients exhibiting de novo or acquired resistance. The underlying mechanism remains unknown. <b><i>Methods:</i></b> A patient with steroid-dependent focal segmental glomerulosclerosis (FSGS) developed severe steroid side effects impacting quality of life and was converted to repository porcine ACTH therapy. Immediate response in the form of remission of nephrotic syndrome was noted followed by relapse in 10 weeks. Suspecting the role of some ACTH-antagonizing factors, the patient’s serum was examined. <b><i>Results:</i></b> Immunoblot-based antibody assay revealed high titers of de novo IgG antibodies in the patient’s serum that were reactive to the porcine corticotropin with negligible cross-reactivity to human corticotropin. In vitro, in cultured B16 melanoma cells that express abundant melanocortin receptors, addition of the patient’s serum substantially abrogated the porcine corticotropin triggered signaling activity of the melanocortinergic pathway, marked by phosphorylation of glycogen synthase kinase 3β, thus suggesting a mitigating effect on the biological functionality of porcine corticotropin. <b><i>Conclusion:</i></b> ACTH is a useful alternative therapeutic modality for refractory proteinuric glomerulopathies like FSGS. However, as quintessential therapeutic biologics, natural ACTH, regardless of purity and origin, is inevitably antigenic and may cause the formation of neutralizing antibodies in some sensitive patients, followed by resistance to ACTH therapy. It is imperative to develop ACTH analogues with less immunogenicity for improving its responsiveness in patients with glomerular diseases.
DOI: 10.25399/unisadata.12000504
title: A bibliometric and altmetric study of the Journal of Community Informatics

description: Data downloaded from the Journal of Community Informatics website. A bibliometric and almetrics study of the Journal of Community Informatics.
DOI: 10.6084/m9.figshare.12000540
title: 3D BIM Model & 3D Pathfinder Simulation

description: 3D BIM data & 3D pathfinder simulation
DOI: 10.25399/unisadata.12000504.v1
title: A bibliometric and altmetric study of the Journal of Community Informatics

description: Data downloaded from the Journal of Community Informatics website. A bibliometric and almetrics study of the Journal of Community Informatics.
DOI: 10.6084/m9.figshare.12000540.v1
title: 3D BIM Model & 3D Pathfinder Simulation

description: 3D BIM data & 3D pathfinder simulation
DOI: 10.6084/m9.figshare.12000579.v1
title: Measuring the uncertainty of shadow economy estimates using Bayesian and frequentist model averaging

description: Data and replication code for the article Measuring the uncertainty of shadow economy estimates using Bayesian and frequentist model averaging.<br>
DOI: 10.6084/m9.figshare.12000249
title: Antimicrobial resistance surveillance report, St Thomas' Hospital, United Kingdom, 01 Jan 2018 to 31 Dec 2018

description: AutoMated tool for Antimicrobial resistance Surveillance System (AMASS) was developed as an offline, open-access and easy-to-use application that allows a hospital to perform data analysis independently and generate isolate-based and sample-based surveillance reports stratified by infection origin from routinely collected electronic databases. AMASS performs data analysis and generates reports automatically. The application can be downloaded from https://www.amass.website<br><br>This is a repository of the files for St Thomas' Hospital. The attached four files are:<br>1) The AMR surveillance report automatically generated from AMASS using hospital admission and microbiology data of St Thomas' Hospital in United Kingdom<br>2) Aggregated summary data in .csv format automatically generated from AMASS<br>3) Data dictionary for microbiology data file of St Thomas' Hospital (configured by the hospital to be used with the AMASS application)<br>4) Data dictionary for hospital admission data of St Thomas' Hospital (configured by the hospital to be used with the AMASS application)<br><br>Please note that the two data dictionary files can be re-used with the data files of the hospital in the future in cases when variables names and values in the raw data remained unchanged.
DOI: 10.6084/m9.figshare.12000234
title: Research Papers_NMTT Portal Dedicated Links.xlsx

description: Dataset for PMMMNMTT Portal.
DOI: 10.6084/m9.figshare.12000141
title: Metadata record for: Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals

description: This dataset contains key characteristics about the data described in the Data Descriptor Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12000141.v1
title: Metadata record for: Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals

description: This dataset contains key characteristics about the data described in the Data Descriptor Database of pharmacokinetic time-series data and parameters for 144 environmental chemicals. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> <br>
DOI: 10.6084/m9.figshare.12000093
title: Electronic supplementary material from Environmental perturbations induce correlations in midge swarms

description: Although collectively behaving animal groups often show large-scale order (such as in bird flocks), they need not always (such as in insect swarms). It has been suggested that the signature of collective behaviour in disordered groups is a residual long-range correlation. However, results in the literature have reported contradictory results as to the presence of long-range correlation in insect swarms, with swarms in the wild displaying correlation but those in a controlled laboratory environment not. We resolve these apparently incompatible results by showing the external perturbations generically induce the emergence of correlations. We apply a range of different external stimuli to laboratory swarms of the non-biting midge <i>Chironomus riparius</i>, and show that in all cases correlations appear when perturbations are introduced. We confirm the generic nature of these results by showing that they can be reproduced in a stochastic model of swarms. Given that swarms in the wild will always have to contend with environmental stimuli, our results thus harmonize previous findings. These findings emphasize that collective behaviour cannot be understood in isolation without considering its environmental context, and that new research is needed to disentangle the distinct roles of intrinsic dynamics and external stimuli.
DOI: 10.6084/m9.figshare.12000093.v1
title: Electronic supplementary material from Environmental perturbations induce correlations in midge swarms

description: Although collectively behaving animal groups often show large-scale order (such as in bird flocks), they need not always (such as in insect swarms). It has been suggested that the signature of collective behaviour in disordered groups is a residual long-range correlation. However, results in the literature have reported contradictory results as to the presence of long-range correlation in insect swarms, with swarms in the wild displaying correlation but those in a controlled laboratory environment not. We resolve these apparently incompatible results by showing the external perturbations generically induce the emergence of correlations. We apply a range of different external stimuli to laboratory swarms of the non-biting midge <i>Chironomus riparius</i>, and show that in all cases correlations appear when perturbations are introduced. We confirm the generic nature of these results by showing that they can be reproduced in a stochastic model of swarms. Given that swarms in the wild will always have to contend with environmental stimuli, our results thus harmonize previous findings. These findings emphasize that collective behaviour cannot be understood in isolation without considering its environmental context, and that new research is needed to disentangle the distinct roles of intrinsic dynamics and external stimuli.
DOI: 10.6084/m9.figshare.12000069
title: Data supplement

description: All data featured in Jesse et al. (2020). Disentangling effects of urban development and plant species invasion on arthropod community composition. Global Change Biology doi: 10.1111/gcb.15091.
DOI: 10.6084/m9.figshare.11999994
title: Extended data 1 Extraction form

description: This is the data extraction form designed for the assessement of the quality of reporting of acupuncture interventions included in our review<br>
DOI: 10.6084/m9.figshare.11999994.v1
title: Extended data 1 Extraction form

description: This is the data extraction form designed for the assessement of the quality of reporting of acupuncture interventions included in our review<br>
DOI: 10.6084/m9.figshare.11999997
title: Supplementary Material for: Retinal “Caratopathy”: Diamond Dust Residuals after Surgeries

description: Diamond dust particles were identified within patients’ eyes both during vitrectomy procedures using diamond-dusted membrane scrapers and in postoperative clinical examinations. The particles had no impact on the patients’ vision and caused no apparent sequelae. Scanning electron microscopy analysis showed the average particle size to be 23.4 μm and an unequal surface area for particle adhesion onto the soft tip. It was determined that diamond dust particles can dislodge from the silicone tip of the Tano diamond-dusted membrane scrapers during the insertion into valve trocars throughout vitrectomy operations and deposit on the retinal surface or within macular holes. Ophthalmologists should be aware of residual diamond particles during procedures and consider diamond dust retinopathy in the differential diagnosis of crystalline retinopathies. Understanding the appearance of residual particles on the retina allows for future studies revealing the long-term impact on patient’s visual performance.
DOI: 10.6084/m9.figshare.11999991
title: Supplementary Material for: Effectiveness of the Air Purification Strategies for the Treatment of Allergic Asthma: A Meta-Analysis

description: We updated the meta-analysis published by McDonald et al. [Chest 2002;122;1535–1542] by reviewing the effectiveness of air purification for the treatment of home-related allergic asthma (dust mite, dog, cat, and cockroach). We analysed the trials included by McDonald et al. as well as studies published since 2000. Data on asthma symptoms scores (ASS), medication use, forced expiratory volume in 1 s as a percentage of the predicted value (FEV<sub>1</sub> %pred), histamine provocative concentration causing a 20% reduction in FEV<sub>1</sub> (PC<sub>20</sub>), Asthma Quality of Life Questionnaire (AQLQ) scores, and fractional exhaled nitric oxide (FeNO) levels were extracted. The effectiveness was examined using metafor (registered in Prospero CRD42019127227). Ten trials including a total of 482 patients (baseline characteristics: mean FEV<sub>1</sub> %pred 83.2%, <i>I</i><sup>2</sup> = 96.7%; mean PC<sub>20</sub> 4.93 mg/mL, <i>I</i><sup>2</sup> = 44.0%; mean AQLQ 4.67 [max. 7], <i>I</i><sup>2</sup> = 93.7%; mean FeNO 36.5 ppb, <i>I</i><sup>2</sup> = 0%) were included. We assessed the mean differences in the AQLQ scores as +0.36 (95% CI 0.10 to 0.62, <i>p</i> = 0.01, <i>n</i> = 302, <i>I</i><sup>2</sup> = 0%) and the FeNO levels as –6.67 ppb (95% CI –10.56 to –2.77, <i>p</i> = 0.0008, <i>n</i> = 304, <i>I</i><sup>2</sup> = 0%). The standardised mean differences in all other health outcomes were not significant (ASS –0.68, <i>p</i> = 0.20; medication use: –0.01, <i>p</i> = 0.94; FEV<sub>1</sub> %pred –0.11, <i>p</i> = 0.34; PC<sub>20</sub> +0.24, <i>p</i> = 0.53). We found statistically significant mean differences in the AQLQ scores and FeNO levels in patients with predominantly mild to moderate asthma at baseline. A large trial reported great improvement in the subgroup of patients receiving Global Initiative for Asthma step 4 therapy. We recommend that future studies on air purification focus on patients with severe and poorly controlled allergic asthma.
DOI: 10.6084/m9.figshare.11999970
title: Raw data file

description: This data set corresponds to the evaluation of the quality of reporting according to the STRICTA check list of each trial incuded in our review<br>
DOI: 10.6084/m9.figshare.11999970.v1
title: Raw data file

description: This data set corresponds to the evaluation of the quality of reporting according to the STRICTA check list of each trial incuded in our review<br>
DOI: 10.6084/m9.figshare.11999967
title: Alignment and tree files from Figure 1

description: Please find alignments and phylogenies for "The Archaeal Roots of the Eukaryotic Dynamic Actin Cytoskeleton".
DOI: 10.6084/m9.figshare.11999943
title: Supplementary Material for: Identification of a Patient Cohort with Relapsing Diffuse Large B-Cell Lymphoma with a Low International Prognostic Index in PET/CT Using a 2-Gene (LMO2/TNFRSF9) Scoring System

description: Medicine
DOI: 10.6084/m9.figshare.11999943.v1
title: Supplementary Material for: Identification of a Patient Cohort with Relapsing Diffuse Large B-Cell Lymphoma with a Low International Prognostic Index in PET/CT Using a 2-Gene (LMO2/TNFRSF9) Scoring System

description: Medicine
DOI: 10.6084/m9.figshare.11999889
title: VC_protein_sequence

description: Sequence of target proteins of Variola Caprina.<br>
DOI: 10.6084/m9.figshare.11999889.v1
title: VC_protein_sequence

description: Sequence of target proteins of Variola Caprina.<br>
DOI: 10.6084/m9.figshare.11999886
title: lsdv_protein_sequence

description: Sequence of target protein of lsdv.<br>
DOI: 10.6084/m9.figshare.11999886.v1
title: lsdv_protein_sequence

description: Sequence of target protein of lsdv.<br>
DOI: 10.6084/m9.figshare.11999829
title: Genetic diversity of 15 autosomal STRs in a sample of Berbers from Aurès region in the Northeast of Algeria and genetic relationships with other neighbouring samples

description: <b>Background:</b> The history of the Aurès mountains and neighbouring areas, a large region of the East of Algeria, was part of the history of the ancient independent Berber kingdoms supposed to be the ancestors of the current Berber people. The genetic background of this region has not yet been clarified. <b>Aim:</b> The aims of our study were to investigate the genetic characteristics of 15 autosomal short tandem repeats (STRs) in a sample from these regions, to determine the degree of heterogeneity among Algerian and North African samples and to analyse the genetic relationships with other populations. <b>Subjects and methods:</b> Allele frequencies, forensic parameters and Hardy–Weinberg equilibrium (HWE) of 15 autosomal STRs included in the PowerPlex<sup>®</sup> ESI 16 System were obtained from 308 individuals. Allele frequencies were used to determine the relationships with other populations. <b>Results:</b> All loci were highly polymorphic and no significant deviation from HWE was detected. Allele frequencies showed that the samples of Aurès region share genetic affinities with other Algerian, North African and Middle Eastern samples, with the exception of samples from Iran and Matmata. <b>Conclusions:</b> These markers revealed a genetic homogeneity between the Algerian and North African samples. The genetic affinities indicate that this sample could share a common ancestor with the Middle Eastern samples.
DOI: 10.6084/m9.figshare.11999829.v1
title: Genetic diversity of 15 autosomal STRs in a sample of Berbers from Aurès region in the Northeast of Algeria and genetic relationships with other neighbouring samples

description: <b>Background:</b> The history of the Aurès mountains and neighbouring areas, a large region of the East of Algeria, was part of the history of the ancient independent Berber kingdoms supposed to be the ancestors of the current Berber people. The genetic background of this region has not yet been clarified. <b>Aim:</b> The aims of our study were to investigate the genetic characteristics of 15 autosomal short tandem repeats (STRs) in a sample from these regions, to determine the degree of heterogeneity among Algerian and North African samples and to analyse the genetic relationships with other populations. <b>Subjects and methods:</b> Allele frequencies, forensic parameters and Hardy–Weinberg equilibrium (HWE) of 15 autosomal STRs included in the PowerPlex<sup>®</sup> ESI 16 System were obtained from 308 individuals. Allele frequencies were used to determine the relationships with other populations. <b>Results:</b> All loci were highly polymorphic and no significant deviation from HWE was detected. Allele frequencies showed that the samples of Aurès region share genetic affinities with other Algerian, North African and Middle Eastern samples, with the exception of samples from Iran and Matmata. <b>Conclusions:</b> These markers revealed a genetic homogeneity between the Algerian and North African samples. The genetic affinities indicate that this sample could share a common ancestor with the Middle Eastern samples.
DOI: 10.6084/m9.figshare.11999811
title: variola_caprina_gene_reocrd.xlsx

description: This datasheet contains genelist of variola caprina (goat/sheep pox virus).<br>
DOI: 10.6084/m9.figshare.11999814
title: lsdv_gene_reocrd.xlsx

description: This datasheet contains the gene list of lumpy skin disease virus (lsdv).<br>
DOI: 10.6084/m9.figshare.11999814.v1
title: lsdv_gene_reocrd.xlsx

description: This datasheet contains the gene list of lumpy skin disease virus (lsdv).<br>
DOI: 10.6084/m9.figshare.11999811.v1
title: variola_caprina_gene_reocrd.xlsx

description: This datasheet contains genelist of variola caprina (goat/sheep pox virus).<br>
DOI: 10.6084/m9.figshare.11999667
title: Annotation of Nymphon striatum

description: This dataset contains gene annotation files (.gbf, .gff, .fnn, .faa,.tsv, .tbl, .fsa, .sqn) of De novo assembly of Nymphon striatum.
DOI: 10.6084/m9.figshare.11999667.v1
title: Annotation of Nymphon striatum

description: This dataset contains gene annotation files (.gbf, .gff, .fnn, .faa,.tsv, .tbl, .fsa, .sqn) of De novo assembly of Nymphon striatum.
DOI: 10.6084/m9.figshare.11999601
title: Supplementary data from Releases of Asian houbara must respect genetic and geographic origin to preserve inherited migration behaviour: evidence from a translocation experiment

description: Data for all migration metrics
DOI: 10.6084/m9.figshare.11999601.v1
title: Supplementary data from Releases of Asian houbara must respect genetic and geographic origin to preserve inherited migration behaviour: evidence from a translocation experiment

description: Data for all migration metrics
DOI: 10.6084/m9.figshare.11999586
title: Assembly of Nymphon striatum

description: De novo assembly sequence of Nymphon striatum and its repeat-masked sequence provided with customized RepBase24.03 library file which was applied to mask repeat elements.<br>Sea-spider.unmasked.scaffolds.fasta : Gap closed assembly of N. striatum<br>Sea-spider_repeatmasked.zip : Repeat masked N. striatum genome output from RepeatMasker containing .cat, .masked, .out and .tbl files<br>RepBase24.03.fasta.parsed.fasta : Cutomized RepBase library file used for repeats annotation by RepeatMasker<br>
DOI: 10.6084/m9.figshare.11999586.v1
title: Assembly of Nymphon striatum

description: De novo assembly sequence of Nymphon striatum and its repeat-masked sequence provided with customized RepBase24.03 library file which was applied to mask repeat elements.<br>Sea-spider.unmasked.scaffolds.fasta : Gap closed assembly of N. striatum<br>Sea-spider_repeatmasked.zip : Repeat masked N. striatum genome output from RepeatMasker containing .cat, .masked, .out and .tbl files<br>RepBase24.03.fasta.parsed.fasta : Cutomized RepBase library file used for repeats annotation by RepeatMasker<br>
DOI: 10.6084/m9.figshare.11999565
title: Used primers and genetic mutations.xlsx

description: These primers were used to investigated genetic mutations in thymic carcinomas and intrathyroid thymic carcinomas.
DOI: 10.6084/m9.figshare.11999565.v1
title: Used primers and genetic mutations.xlsx

description: These primers were used to investigated genetic mutations in thymic carcinomas and intrathyroid thymic carcinomas.
DOI: 10.6084/m9.figshare.11999292
title: Additional file 3 of RASflow: an RNA-Seq analysis workflow with Snakemake

description: Additional file 3 Tables of differentially expressed gene lists of RASflow using both the transcriptome and the genome as mapping reference and using DESeq2 and edgeR as differential expression analysis methods and their performance.
DOI: 10.6084/m9.figshare.11999292.v1
title: Additional file 3 of RASflow: an RNA-Seq analysis workflow with Snakemake

description: Additional file 3 Tables of differentially expressed gene lists of RASflow using both the transcriptome and the genome as mapping reference and using DESeq2 and edgeR as differential expression analysis methods and their performance.
DOI: 10.15468/gvnstm
title: A review of the genus Parapenaeon Richardson, 1904 (Crustacea: Isopoda: Bopyridae: Orbioninae), with description of three new species from China

description: This dataset contains the digitized treatments in Plazi based on the original journal article An, Jianmei, Markham, John C., Li, Xinzheng (2015): A review of the genus Parapenaeon Richardson, 1904 (Crustacea: Isopoda: Bopyridae: Orbioninae), with description of three new species from China. Journal of Natural History 49 (41): 2527-2557, DOI: 10.1080/00222933.2015.1023227