cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15393964
title: Raw data -Xenium - Barba reyes et al. 2025- part 1/3

description: This repository includes the raw data of PD patients profiled with Xenium for Barba Reyes et al. 2025. (Part 1/2)

For processed data, use: 10.5281/zenodo.15304115

 

Other raw data is in:

(2/3) -10.5281/zenodo.15395905

(3/3)- 10.5281/zenodo.15396670

 

Also Xenium files from healthy donors  can be obtained from Garma et al. 2025:

https://www.nature.com/articles/s41467-024-50414-w
DOI: 10.5281/zenodo.15396671
title: cygnus_buccinator_spades_01.fasta.gz
DOI: 10.5281/zenodo.15396672
title: cygnus_buccinator_spades_01.fasta.gz
DOI: 10.21227/90ba-zk70
title: "3DLAS"

description: "To advance research in flexible sensing systems, we introduce 3DLAS, a comprehensive dataset captured using our linear array configuration. "
DOI: 10.5281/zenodo.15396475
title: TABLE 1 in Enchytraeidae (Annelida: Oligochaeta) from Uzbekistan, with the description of a new species

description: TABLE 1. The study localities in Uzbekistan.
NumberLocationVegetationSampling dateLatitude, °NLongitude, °E1Lower Amudarya State Biosphere Reserve, 8 km west of TallyqTugai (riparian deciduous forest)04.05.202241.9772560.403532KhivaGrassland near an irrigation canal30.04.202241.4092660.352643UrgenchGrassland next to an orchard30.04.202241.5700960.650214Near Shymylyi-Ata graveyard, 4 km east of XalkobodDry deciduous grove03.05.202242.6887259.784545XalkobodDeciduous grove near small pond03.05.202242.6950259.746336Western part of NukusDeciduous forest in the old bed of the Amu Darya02.05.202242.4592159.5573178 km northwest of XojeliElaeagnus and Populus grove05.05.202242.4708759.3583984 km northwest of QanlikólDry irrigation canal05.05.202242.8663658.9531593.5 km southeast of PiskentSmall deciduous grove28.10.202240.8716769.40139103.5 km northeast of Bol’shaya MikhaylovkaPlanted Ulmus forest01.11.202239.8003767.3441111200 m south of Quaratepa ReservoirGrove patch surrounded by vineyards31.10.202239.4039767.0252712East of Aman-KutanForest composed of Populus, Quercus, Platanus and Juglans regia.31.10.202239.3147066.96954133 km south of ChorvoqJuglans regia forest23.10.202241.6027669.95397141 km southwest of ObetovanniCotton field irrigation canal28.10.202240.6097168.88860156.5 km west of SayxanDry mountainous steppe28.10.202240.0520167.75960161.3 km south of Kichik TurkGrove with Populus and Phragmites near the cotton field irrigation canal25.10.202240.6804670.83260174 km south of Kamchik Tunnel entranceMountainous grove with ruderal plants26.10.202241.0505170.5692718Yangiyo’lDeciduous grove28.10.202241.1434169.0248219ChorvoqOrchard23.10.202241.6411169.93712207 km northwest of Xonobod (Namangan Region)Sand desert26.10.202240.9299370.70426
description: Published as part of Degtyarev, Maxim I., Zvychaynaya, Elena Y., Tarasyan, Karina K. & Gongalsky, Konstantin B., 2025, Enchytraeidae (Annelida: Oligochaeta) from Uzbekistan, with the description of a new species, pp. 37-38 in Zootaxa 5633 (1) on page 37, DOI: 10.11646/zootaxa.5633.1.2, http://zenodo.org/record/15372777
DOI: 10.15468/dl.ffk5zf
title: Occurrence Download

description: A dataset containing 3875 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Meles meles (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((5.909542 6.887031, 46.02748 6.887031, 46.02748 46.536194, 5.909542 46.536194, 5.909542 6.887031))",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 3875 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028359-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.8346924
title: Sainfoin Pod Threshing Images

description: <em><strong>THIS DATASET IS BETA VERSION 0.1.0 AND IS EXPECTED TO CHANGE AT ANY TIME.</strong></em> This dataset consists of 500 images of sainfoin (Onobrychis viciifolia) seed pods, seed, and split seeds. The images were taken as a part of an experiment to determine minimum sample size of seed pods needed to accurately estimate pod threshing trait heritability within sainfoin breeding lines. The experiment was a complete factorial design with the following factors: Sainfoin named varieties: AAC Mountainview, Delaney, Eski , Rocky Mountain Remont, and Shoshone Sample Size: 1, 2, 3, 4, and 5 grams of dried seed pods Two different threshing types: Belt thresher processed 3X, Haldrup Impact Thresher (35sec @ Speed 9) This makes for a total factorial combination set of 5 varieties X 5 sample sizes X 2 threshing types = 50. Each combination was comprised of 10 individual replicates where each replicate in a combination was a unique, random sample of seeds of the same mass (So, 10 random, 2g samples of Eski seed, processed by belt thresher; 10 random, 5g samples of Delaney seed processed by the Haldrup thresher, etc.). This makes for a total of 500 experimental units that comprise the sample set. Once the seeds were sampled, weighed, and processed through the threshing equipment, they were weighed again and imaged. The threshed seeds were scattered onto an imaging platform with a blue background, lit by 2 LED panels, and photographed with a Sony ILCE-7RM2 at the following settings: ISO: 100 Exposure: 1/40s Focal Length: 55mm Format: TIFF Size: 7968x5320 The raw images were converted from TIFF files to JPEG format and annotated in image labeling software. The seed objects were annotated with bounding boxes classified as the following classes pod: an enclosed seed pod seed: a seed which was successfully threshed from the legume pod carpel split: a seed threshed from the pod, but which split in two halves during the threshing process All image annotations were exported into the convenient COCO format. No further image processing was performed. The image set was split into a 80/20 training and validation step using `scikit-learn` in Python 3.11 stratifying the datasets equally over the various experimental factor levels. The zip file 'train_val_images.zip' contains a 'train' folder with 400 training images, 'val' containing 100 validation images, an image taken with a color correction card named 'color_test.jpg', and a json file with all the annotations. Another file called 'seed_weights.csv' contains the image_name to global-key mapping in tabular format as well as the before and after threshing seed weights for each experimental sample.
DOI: 10.5281/zenodo.8410384
title: Sainfoin Pod Threshing Images

description: <em><strong>THIS DATASET IS BETA VERSION 0.1.1 AND IS EXPECTED TO CHANGE AT ANY TIME.</strong></em> This dataset consists of 500 images of sainfoin (Onobrychis viciifolia) seed pods, seed, and split seeds. The images were taken as a part of an experiment to determine minimum sample size of seed pods needed to accurately estimate pod threshing trait heritability within sainfoin breeding lines. The experiment was a complete factorial design with the following factors: Sainfoin named varieties: AAC Mountainview, Delaney, Eski , Rocky Mountain Remont, and Shoshone Sample Size: 1, 2, 3, 4, and 5 grams of dried seed pods Two different threshing types: Belt thresher processed 3X, Haldrup Impact Thresher (35sec @ Speed 9) This makes for a total factorial combination set of 5 varieties X 5 sample sizes X 2 threshing types = 50. Each combination was comprised of 10 individual replicates where each replicate in a combination was a unique, random sample of seeds of the same mass (So, 10 random, 2g samples of Eski seed, processed by belt thresher; 10 random, 5g samples of Delaney seed processed by the Haldrup thresher, etc.). This makes for a total of 500 experimental units that comprise the sample set. Once the seeds were sampled, weighed, and processed through the threshing equipment, they were weighed again and imaged. The threshed seeds were scattered onto an imaging platform with a blue background, lit by 2 LED panels, and photographed with a Sony ILCE-7RM2 at the following settings: ISO: 100 Exposure: 1/40s Focal Length: 55mm Format: TIFF Size: 7968x5320 The raw images were converted from TIFF files to JPEG format and annotated in image labeling software. The seed objects were annotated with bounding boxes classified as the following classes pod: an enclosed seed pod seed: a seed which was successfully threshed from the legume pod carpel split: a seed threshed from the pod, but which split in two halves during the threshing process All image annotations were exported into the convenient COCO format. No further image processing was performed. The image set was split into a 80/20 training and validation step using `scikit-learn` in Python 3.11 stratifying the datasets equally over the various experimental factor levels. The zip file 'train_val_images.zip' contains a 'train' folder with 400 training images, 'val' containing 100 validation images, an image taken with a color correction card named 'color_test.jpg', and a json file with all the annotations. Another file called 'seed_weights.csv' contains the image_name to global-key mapping in tabular format as well as the before and after threshing seed weights for each experimental sample. <strong>Labeling Metrics:</strong> Annotation Class Count Percentage Pod 36,599 48.58% Seed 25,488 33.83% Split 13,255 17.59% <strong>Total</strong> 75,342 100%
DOI: 10.5281/zenodo.15396619
title: securibench-micro.js Dataset

description: A basic JavaScript/Express.js taint analysis benchmark based off of the Java equivalent, Securibench Micro.
DOI: 10.5281/zenodo.15396620
title: securibench-micro.js Dataset

description: A basic JavaScript/Express.js taint analysis benchmark based off of the Java equivalent, Securibench Micro.
DOI: 10.5281/zenodo.15308419
title: Raw data for publication entitled "Achieving High-Resolution Spatial Mapping of Dose and Linear Energy Transfer in Ion-Beam Therapy"

description: Raw data and minimum working example of data analysis used for the publication entitled "Achieving High-Resolution Spatial Mapping of Dose and Linear Energy Transfer in Ion-Beam Therapy"
DOI: 10.5281/zenodo.15308420
title: Raw data for publication entitled "Achieving High-Resolution Spatial Mapping of Dose and Linear Energy Transfer in Ion-Beam Therapy"

description: Raw data and minimum working example of data analysis used for the publication entitled "Achieving High-Resolution Spatial Mapping of Dose and Linear Energy Transfer in Ion-Beam Therapy"
DOI: 10.15468/dl.hqxxng
title: Occurrence Download

description: A dataset containing 969 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lepus saxatilis F.Cuvier, 1823"
 ]
}

 The dataset includes 969 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028361-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15396701
title: ClimPol simulation

description: ClimSim exercise, pre & post data
DOI: 10.5281/zenodo.15396702
title: ClimPol simulation

description: ClimSim exercise, pre & post data
DOI: 10.5281/zenodo.15396461
title: Combined works of Lisa McDermed

description: Four papers that explain my two original base equations and their real world applications.
DOI: 10.5281/zenodo.15396462
title: Combined works of Lisa McDermed

description: Four papers that explain my two original base equations and their real world applications.
DOI: 10.2908/sdg_10_60
title: Asylum applications by state of procedure
title: Demandes d'asile par état de procédure
title: Asylanfragen nach Bearbeitungsstand

description: L’indicateur montre le nombre de primo-demandeurs d’asile par million d’habitants, et le nombre de décisions de première instance positives par million d’habitants. Veuillez noter que la prudence est requise lors de la comparaison de ces deux valeurs, étant donné que les demandes reçues au cours d’une année donnée peut ne pas être traitées jusqu’à une année ultérieure. Les sources des données sont transmises à Eurostat par les ministères de l’intérieur et les agences officielles. Un premier demandeur de protection internationale est une personne qui a déposé une demande d’asile pour la première fois dans un État membre donné. Décisions de première instance sont des décisions accordé par l’autorité statuant en première instance de la procédure administrative/judiciaire d’asile dans le pays d’accueil.
description: Der Indikator gibt die Zahl der erstmaligen Asylbewerber pro Million Einwohner und die Zahl der positiven erstinstanzlichen Entscheidungen über Asylanträge je Million Einwohner an. Bitte beachten Sie, dass beim Vergleich dieser beiden Werte Vorsicht geboten ist, da die in einem bestimmten Jahr eingegangenen Anträge möglicherweise erst zu einem späteren Zeitpunkt bearbeitet werden. Die Quelldaten werden Eurostat von den nationalen Innenministerien und den damit verbundenen amtlichen Stellen übermittelt. Erstmalige Bewerber auf internationalen Schutz sind Personen, die erstmals in einem bestimmten Mitgliedstaat einen Asylantrag gestellt haben. Erstinstanzliche Entscheidungen über Asylanträge sind Entscheidungen der jeweiligen Behörde, die als erste Instanz des administrativen/gerichtlichen Asylverfahrens im Aufnahmeland fungiert.
description: The indicator shows the number of first-time asylum applicants per million inhabitants and the number of positive first instance decisions per million inhabitants. Please note that caution is required when comparing these two values, since applications received in a given year might not be processed until a later year. Source data are supplied to Eurostat by the national Ministries of Interior and related official agencies. A first-time applicant for international protection is a person who lodged an application for asylum for the first time in a given Member State. First instance decisions are decisions granted by the respective authority acting as a first instance of the administrative/judicial asylum procedure in the receiving country.
DOI: 10.2908/tsc00007
title: Share of government budget appropriations or outlays on research and development
title: Part des crédits budgétaires publics de recherche et de développement
title: Anteil der staatlichen Mittelzuweisung für Forschung und Entwicklung

description: Staatliche Mittelzuweisungen oder Aufwendungen für Forschung und Entwicklung (GBARD), als Prozentsatz der Gesamtausgaben des Staates. GBARD-Daten beziehen sich auf die Haushaltsbestimmungen und nicht auf die tatsächlichen Ausgaben.
description: Government budget allocations for R&D (GBARD), as a percentage of total general government expenditure. GBARD data are measuring government support to research and development (R&D). The allocations refer to budget provisions, not to actual expenditure.
description: Crédits budgétaires publics de R&D (CBPRD), en pourcentage des dépenses totales des administrations publiques. Les CBPRD se rapportent aux prévisions budgétaires et non aux dépenses effectives.
DOI: 10.2908/tsc00031
title: Intramural R&D expenditure (GERD) by source of funds
title: Dépenses intra-muros de R&D (DIRD) par source de financement
title: Interne FuE-Ausgaben (GERD) nach Finanzierungsquelle

description: Anteil der verschiedenen Finanzierungsquellen für Forschung und Entwicklung (GERD – Bruttoinlandsausgaben für Forschung und Entwicklung): finanziert durch Unternehmen, Staat, Hochschulen, privaten Organisationen ohne Erwerbszweck, sowie das Ausland. Ausgedrückt als Prozentsatz des Gesamtbetrags.
description: Shares taken by the various R&D (GERD - gross domestic expenditure on R&D) sources of funds: financed by businesses, government, higher education, private non profit sector and from abroad, respectively. Expressed as a percentage of the total. 
description: Part représentée par les différentes sources de financement de la R&D (DIRD – dépenses intérieures brutes de R&D) provenant respectivement des entreprises, de l'État, de l'enseignement supérieur, du secteur privé à but non lucratif et du reste du monde. Exprimée en pourcentage du total.
DOI: 10.5281/zenodo.15387583
title: Nephelometer measurements of aerosol particle scattering and backscattering coefficients in summertime in Narsaq, South Greenland during Greenfjord 2023

description: Abstract and dataset contents:

This dataset contains 1-minute averaged measurements of aerosol particle scattering and backscattering coefficients at three wavelengths—blue (450 nm), green (525 nm), and red (635 nm)—using the Aurora™ 3000 three-wavelength integrating nephelometer (Acoem, Melbourne, Australia). Measurements were carried out at the Narsaq International Research Station (NIRS) in southern Greenland (60.9158°N, 46.0533°W, 17 m above sea level) during the Greenfjord campaign in June-August 2023.

Metadata can be found in the file 'Metadata_Nephelometer.docx'. Briefly, the dataset files (Nephelometer.csv) include:



Datetime

Scattering coefficient at 450, 525 and 635 nm (M m-1)

Backscattering coefficients at 450, 525 and 635 nm (M m-1)

Pollution flag to inform data user when short-lived spikes can be found in the data from local anthropogenic pollution

Calibration flag to inform data user of data after unsuccessful calibration, where calibration values did not fall within the range suggested by the manufacturer


Funding acknowledgements:

This work was supported by funding from the Swiss National Science Foundation grant no. 200021_212101, the Swiss Polar Institute grant no. SPI-FLAG-2021-002 Greenfjord, and the ENAC Flagship 2022 ECO-Plains.
DOI: 10.15468/dl.agkrkz
title: Occurrence Download

description: A dataset containing 2592699 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Pl@ntNet observations"
 ]
}

 The dataset includes 2592699 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028351-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8r8ut8
title: Occurrence Download

description: A dataset containing 268 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hippocamelus antisensis (d'Orbigny, 1834)"
 ]
}

 The dataset includes 268 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028365-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p13ushfw
title: Geophysical and video logs of four wells from the Mountain Home area, Idaho

description: In cooperation with the Idaho Department of Water Resources, the U.S. Geological Survey (USGS) collected groundwater levels, geophysical logs, and video logs at four newly constructed monitoring wells from the Mountain Home area, Idaho, between November 12 and November 14, 2024. The Mountain Home area is located in the western Snake River plain, 40 miles to the southeast from the state capital in the upstream direction. Geophysical data were collected using Century™ multi-parameter logging probes and select logs as well as the lithologic interpretation are displayed in well log figures. Select geophysical logs include natural gamma, neutron, gamma-gamma density, specific conductance, and temperature. The USGS collected video logs to confirm the construction, integrity, and total depth for each well prior to running geophysical logging tools. Geophysical data shown in well log figures were collected using the natural gamma, temperature, and specific conductance probe (9042A), neutron probe (9057A), and gamma-gamma density probe (0024C). Additional geophysical data are shown for gyroscopic deviation data, included from probe (9095C) and processed using techniques described in Twining, 2016. Geophysical data were collected within cased wells and compared against reports supplied by Idaho Department of Water Resources. Geophysical logs, driller reports, and regional geology were examined synergistically to identify lithologic units, contacts, and suggest water bearing formations. Geophysical data supports construction for the hydrogeologic framework of the area through interpretations of the confining units, fracture zones, porosity, and permeability of the subsurface.
Twining, B.V., 2016, Borehole deviation and correction factor data for selected wells in the eastern Snake River Plain aquifer at and near the Idaho National Laboratory, Idaho: U.S. Geological Survey Scientific Investigations Report 2016–5163 (DOE/ID–22241), 23 p., plus appendixes, https://doi.org/10.3133/sir20165163.
DOI: 10.15468/dl.7pc8qn
title: Occurrence Download

description: A dataset listing the 661042 species recorded in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "OccurrenceStatus is Present"
 ]
}

 The dataset's 661042 records were derived from 9939 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028357-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15276917
title: A controlled source physical model for long period seismic events
DOI: 10.5281/zenodo.15276918
title: A controlled source physical model for long period seismic events
DOI: 10.3535/0cr-ckq-xlb
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ht7-l7w-f20
title: Voacanga Thouars

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lsb-d37-pyq
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/qqd-fz3-nej
title: Carpenteria Gray, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4x1-gls-e5a
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9q8-r4b-0nt
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4xt-7sx-m7n
title: †Anthracosia W. King, 1856

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ybf-969-lm1
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/123-jmk-3np
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9ej-tt7-wnx
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/mgd-ykj-5p4
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nhq-k8r-wzr
title: Magnoliopsida

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yfn-k6j-3fz
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dz9-dt2-t7n
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/vzm-ey6-g6m
title: Orthiopteris Copel.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/s4p-tv6-wg2
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/9xw-9m5-rtw
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/hyk-fny-qaf
title: Plantae

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.