cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2drm93
title: CCDC 2227235: Experimental Crystal Structure Determination

description: Related Article: S.K. Nechipadappu, S. Balasubramanian|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|78|doi:10.1107/S2052520622011969
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dq69n
title: CCDC 2225871: Experimental Crystal Structure Determination

description: Related Article: Zihong Yu, Xiuli You, Wenqing Du, Ziqin Peng, Wenjing Guo, Zhenhong Wei|2023|CrystEngComm|25|822|doi:10.1039/D2CE01521H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2drmb4
title: CCDC 2227236: Experimental Crystal Structure Determination

description: Related Article: S.K. Nechipadappu, S. Balasubramanian|2023|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|79|78|doi:10.1107/S2052520622011969
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx35l
title: CCDC 2201749: Experimental Crystal Structure Determination

description: Related Article: Simon Payne, Iryna Andrusenko, Francesco Papi, Jason Potticary, Mauro Gemmi, Simon R. Hall|2023|CrystEngComm|25|828|doi:10.1039/D2CE01127A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2cx34k
title: CCDC 2201748: Experimental Crystal Structure Determination

description: Related Article: Simon Payne, Iryna Andrusenko, Francesco Papi, Jason Potticary, Mauro Gemmi, Simon R. Hall|2023|CrystEngComm|25|828|doi:10.1039/D2CE01127A
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7585080
title: Microcirculatory Alterations in Critically Ill Patients with COVID-19-Associated Acute Respiratory Distress Syndrome

description: Di Dedda U, Ascari A, Fantinato A, Fina D, Baryshnikova E, Ranucci M. Microcirculatory Alterations in Critically Ill Patients with COVID-19-Associated Acute Respiratory Distress Syndrome. J Clin Med. 2022 Feb 16;11(4):1032. doi: 10.3390/jcm11041032. PMID: 35207303; PMCID: PMC8876221. Abstract <strong>Background: </strong>Presently, a number of specific observations have been performed on microcirculatory function in a coronavirus disease-19 (COVID-19) setting. We hypothesized that, in the critically ill, endothelial dysfunction secondary to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and the subsequent inflammation and coagulopathy may lead to microcirculatory alterations, further exacerbated by the hypoxemic state. A dysfunctional microcirculation may represent the hidden motor underlying the development of COVID-19's clinical manifestations. <strong>Methods: </strong>A single center, prospective, observational study. We analyzed bedside sublingual microcirculation in twenty-four consecutive COVID-19-associated acute respiratory distress syndrome (ARDS) patients mechanically ventilated in an Intensive Care Unit (ICU), together with macro-hemodynamics, clinical parameters, echocardiography, and laboratory data at a single time-point after ICU admission. All participants were recruited between March and May 2020. <strong>Results: </strong>The microcirculatory pattern was characterized by increased values of total vessel density and perfused vessel density, a reduced value of proportion of perfused vessels and microvascular flow index, and high values of heterogeneity index. The duration of mechanical ventilation before microcirculation assessment was inversely associated with the proportion of perfused vessels (<em>p</em> = 0.023). Within the macro-hemodynamic parameters, the right ventricle end-diastolic diameter was inversely associated with proportion of perfused vessels and microvascular flow index (<em>p</em> = 0.039 and 0.014, respectively) and directly associated with the heterogeneity index (<em>p</em> = 0.033). <strong>Conclusions: </strong>In COVID-19-associated ARDS patients, the microcirculation showed impaired quality of flow parameters coupled with a high vessel density.
DOI: 10.5281/zenodo.7585079
title: Microcirculatory Alterations in Critically Ill Patients with COVID-19-Associated Acute Respiratory Distress Syndrome

description: Di Dedda U, Ascari A, Fantinato A, Fina D, Baryshnikova E, Ranucci M. Microcirculatory Alterations in Critically Ill Patients with COVID-19-Associated Acute Respiratory Distress Syndrome. J Clin Med. 2022 Feb 16;11(4):1032. doi: 10.3390/jcm11041032. PMID: 35207303; PMCID: PMC8876221. Abstract <strong>Background: </strong>Presently, a number of specific observations have been performed on microcirculatory function in a coronavirus disease-19 (COVID-19) setting. We hypothesized that, in the critically ill, endothelial dysfunction secondary to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection and the subsequent inflammation and coagulopathy may lead to microcirculatory alterations, further exacerbated by the hypoxemic state. A dysfunctional microcirculation may represent the hidden motor underlying the development of COVID-19's clinical manifestations. <strong>Methods: </strong>A single center, prospective, observational study. We analyzed bedside sublingual microcirculation in twenty-four consecutive COVID-19-associated acute respiratory distress syndrome (ARDS) patients mechanically ventilated in an Intensive Care Unit (ICU), together with macro-hemodynamics, clinical parameters, echocardiography, and laboratory data at a single time-point after ICU admission. All participants were recruited between March and May 2020. <strong>Results: </strong>The microcirculatory pattern was characterized by increased values of total vessel density and perfused vessel density, a reduced value of proportion of perfused vessels and microvascular flow index, and high values of heterogeneity index. The duration of mechanical ventilation before microcirculation assessment was inversely associated with the proportion of perfused vessels (<em>p</em> = 0.023). Within the macro-hemodynamic parameters, the right ventricle end-diastolic diameter was inversely associated with proportion of perfused vessels and microvascular flow index (<em>p</em> = 0.039 and 0.014, respectively) and directly associated with the heterogeneity index (<em>p</em> = 0.033). <strong>Conclusions: </strong>In COVID-19-associated ARDS patients, the microcirculation showed impaired quality of flow parameters coupled with a high vessel density.
DOI: 10.6084/m9.figshare.21694847
title: Supplementary Material for: Comparison of multicolor scanning laser imaging and color fundus photography in evaluating vessel whitening in branch retinal vein occlusion

description: Introduction: Few studies have explored Multicolor™ imaging (MCI) in evaluating retinal vascular diseases, particularly branch retinal vein occlusion (BRVO). This study aimed to compare the identification of retinal vessel whitening in BRVO using MCI by scanning confocal laser versus conventional white flash color fundus photography (CFP). Methods: Paired images of consecutive patients diagnosed with BRVO who underwent same-day MCI and CFP were reviewed. Visualization of vessel whitening on MCI and CFP was graded and scored using a scale by two masked graders. A longitudinal analysis of the vessel grading score was performed to evaluate the vessel whitening detection by MCI. A correlation analysis was conducted between vessel whitening on MCI and the measured area of retinal ischemia on fluorescein angiography to evaluate the MCI performance. Results: Forty-four eyes of 41 patients (mean age 69±14 years; 61% female) were analyzed. MCI demonstrated superior vessel whitening visibility score than CFP (p&lt;0.001). Longitudinal analysis showed no significant changes in vessel whitening visibility scores over a mean follow-up time of 430 ± 648 days (p=0.655). There was a significantly positive correlation between the grading score of vessels whitening by MCI and the area of ischemia by fluorescein angiography (r2=0.15; p=0.036). Conclusion: MCI appears to provide a superior detection of whitening BRVO compared to CFP, serving as a rapid and non-invasive correlate of retinal ischemia.
DOI: 10.3886/e161484
title: Data and Code for: Primary-Market Auctions for Event Tickets: Eliminating the Rents of "Bob the Broker"?

description: Economists have long been puzzled by event-ticket underpricing: underpricing reduces revenue for the performer, and encourages socially wasteful rent-seeking by ticket brokers. What about using an auction? This paper studies the mid-00's introduction of auctions into this market by Ticketmaster. By combining primary-market auction data from Ticketmaster with secondary-market resale value data from eBay, we show that Ticketmaster's auctions “worked”: they substantially improved price discovery, roughly doubled performer revenues, and, on average, nearly eliminated the potential arbitrage profits associated with underpriced tickets. We conclude by discussing why, nevertheless, the auctions failed to take off.
description: All primary-market auctions in 2007 and all eBay resale activity associated with these auctions.
description: All Ticketmaster concert sales in 2007 with auctions, and all associated resale activity for these concerts. (The last concert in the data set took place in April 2008 so resale data were collected over the period Jan 2007 through April 2008.).
description: Primary-market auction data were obtained from Ticketmaster under a data-use agreement. An anonymized version of these data are provided on this repository.<br><br>Secondary-market resale value data were obtained from eBay using Perl scripts. An example Perl script is provided in the replication files as well as all of the eBay html files that were collected.<br><br>For more details see the Readme.
DOI: 10.3886/e161484v1
title: Data and Code for: Primary-Market Auctions for Event Tickets: Eliminating the Rents of "Bob the Broker"?

description: Economists have long been puzzled by event-ticket underpricing: underpricing reduces revenue for the performer, and encourages socially wasteful rent-seeking by ticket brokers. What about using an auction? This paper studies the mid-00's introduction of auctions into this market by Ticketmaster. By combining primary-market auction data from Ticketmaster with secondary-market resale value data from eBay, we show that Ticketmaster's auctions “worked”: they substantially improved price discovery, roughly doubled performer revenues, and, on average, nearly eliminated the potential arbitrage profits associated with underpriced tickets. We conclude by discussing why, nevertheless, the auctions failed to take off.
description: All primary-market auctions in 2007 and all eBay resale activity associated with these auctions.
description: All Ticketmaster concert sales in 2007 with auctions, and all associated resale activity for these concerts. (The last concert in the data set took place in April 2008 so resale data were collected over the period Jan 2007 through April 2008.).
description: Primary-market auction data were obtained from Ticketmaster under a data-use agreement. An anonymized version of these data are provided on this repository.<br><br>Secondary-market resale value data were obtained from eBay using Perl scripts. An example Perl script is provided in the replication files as well as all of the eBay html files that were collected.<br><br>For more details see the Readme.
DOI: 10.25403/upresearchdata.21636755
title: Multisystemic resilience enablers reported by Zamdela adolescents during 2020 COVID-19 lockdown conditions

description: The dataset consists of an audit trail highlighting the inductive thematic analysis process used to interpret the data. Additionally, the dataset includes a document which explains the inclusion and exclusion criteria used to analyse the data. Finally, a graphic representation of how the Social Ecology Theory of Resilience principals relate to the findings of the study is also included. All the original data were generated by a group of 79 young people who were living in a township during COVID-19 2020 lockdown conditions in South Africa. The data was generated using a draw-and-write methodology and all these generated documents were analysed using inductive thematic analysis.
DOI: 10.25403/upresearchdata.21636755.v1
title: Multisystemic resilience enablers reported by Zamdela adolescents during 2020 COVID-19 lockdown conditions

description: The dataset consists of an audit trail highlighting the inductive thematic analysis process used to interpret the data. Additionally, the dataset includes a document which explains the inclusion and exclusion criteria used to analyse the data. Finally, a graphic representation of how the Social Ecology Theory of Resilience principals relate to the findings of the study is also included. All the original data were generated by a group of 79 young people who were living in a township during COVID-19 2020 lockdown conditions in South Africa. The data was generated using a draw-and-write methodology and all these generated documents were analysed using inductive thematic analysis.
DOI: 10.5281/zenodo.7585136
title: Non-invasive estimation of vascular compliance and distensibility in the arm vessels: a novel ultrasound-based protocol

description: Cappelletti S, Caimi A, Caldiroli A, Baroni I, Votta E, Riboldi SA, Marrocco-Trischitta MM, Redaelli A, Sturla F. Non-invasive estimation of vascular compliance and distensibility in the arm vessels: a novel ultrasound-based protocol. Quant Imaging Med Surg. 2022 Jul;12(7):3515-3527. doi: 10.21037/qims-21-987. PMID: 35782271; PMCID: PMC9246759. <strong>Abstract</strong> <strong>Background: </strong>Performance and durability of arterio-venous grafts depend on their ability to mimic the mechanical behavior of the anastomized blood vessels. To select the most suitable synthetic graft, <em>in vivo</em> evaluation of the radial deformability of peripheral arteries and veins could be crucial; however, a standardized non-invasive strategy is still missing. Herein, we sought to define a novel and user-friendly clinical protocol for <em>in vivo</em> assessment of the arm vessel deformability. <strong>Methods: </strong>A dedicated protocol, applied on 30 volunteers, was specifically designed to estimate both compliance and distensibility of the brachial and radial arteries, and of the basilic and cephalic veins. Bi-dimensional ultrasound imaging was used to acquire cross-sectional areas (CSAs) of arteries in clinostatic configuration, and CSAs of veins combining clinostatic and orthostatic configurations. Arterial pulse pressure was measured with a digital sphygmomanometer, while venous hydrostatic pressure was derived from the arm length in orthostatic configuration. <strong>Results: </strong>For each participant, all CSAs were successfully extracted from ultrasound images. The basilic vein and the radial artery exhibited the largest (21.5±8.9 mm<sup>2</sup>) and the smallest (3.4±1.0 mm<sup>2</sup>) CSAs, respectively; CSA measurements were highly repeatable (Bland-Altman bias &lt;10% and Pearson correlation ≥0.90, for both arteries and veins). In veins, compliance and distensibility were higher than in arteries; compliance was significantly higher (P&lt;0.0001) in the brachial than in the radial artery (3.52×10<sup>-4</sup> <em>vs.</em> 1.3×10<sup>-4</sup> cm<sup>2</sup>/mmHg); it was three times larger in basilic veins than in cephalic veins (17.4×10<sup>-4</sup> <em>vs.</em> 5.6×10<sup>-4</sup> cm<sup>2</sup>/mmHg, P&lt;0.0001). <strong>Conclusions: </strong>The proposed non-invasive protocol proved feasible, effective and adequate for daily clinical practice, allowing for the estimation of patient-specific compliance and distensibility of peripheral arteries and veins. If further extended, it may contribute to the fabrication of biohybrid arterio-venous grafts, paving the way towards patient-tailored solutions for vascular access.
DOI: 10.5281/zenodo.7585135
title: Non-invasive estimation of vascular compliance and distensibility in the arm vessels: a novel ultrasound-based protocol

description: Cappelletti S, Caimi A, Caldiroli A, Baroni I, Votta E, Riboldi SA, Marrocco-Trischitta MM, Redaelli A, Sturla F. Non-invasive estimation of vascular compliance and distensibility in the arm vessels: a novel ultrasound-based protocol. Quant Imaging Med Surg. 2022 Jul;12(7):3515-3527. doi: 10.21037/qims-21-987. PMID: 35782271; PMCID: PMC9246759. <strong>Abstract</strong> <strong>Background: </strong>Performance and durability of arterio-venous grafts depend on their ability to mimic the mechanical behavior of the anastomized blood vessels. To select the most suitable synthetic graft, <em>in vivo</em> evaluation of the radial deformability of peripheral arteries and veins could be crucial; however, a standardized non-invasive strategy is still missing. Herein, we sought to define a novel and user-friendly clinical protocol for <em>in vivo</em> assessment of the arm vessel deformability. <strong>Methods: </strong>A dedicated protocol, applied on 30 volunteers, was specifically designed to estimate both compliance and distensibility of the brachial and radial arteries, and of the basilic and cephalic veins. Bi-dimensional ultrasound imaging was used to acquire cross-sectional areas (CSAs) of arteries in clinostatic configuration, and CSAs of veins combining clinostatic and orthostatic configurations. Arterial pulse pressure was measured with a digital sphygmomanometer, while venous hydrostatic pressure was derived from the arm length in orthostatic configuration. <strong>Results: </strong>For each participant, all CSAs were successfully extracted from ultrasound images. The basilic vein and the radial artery exhibited the largest (21.5±8.9 mm<sup>2</sup>) and the smallest (3.4±1.0 mm<sup>2</sup>) CSAs, respectively; CSA measurements were highly repeatable (Bland-Altman bias &lt;10% and Pearson correlation ≥0.90, for both arteries and veins). In veins, compliance and distensibility were higher than in arteries; compliance was significantly higher (P&lt;0.0001) in the brachial than in the radial artery (3.52×10<sup>-4</sup> <em>vs.</em> 1.3×10<sup>-4</sup> cm<sup>2</sup>/mmHg); it was three times larger in basilic veins than in cephalic veins (17.4×10<sup>-4</sup> <em>vs.</em> 5.6×10<sup>-4</sup> cm<sup>2</sup>/mmHg, P&lt;0.0001). <strong>Conclusions: </strong>The proposed non-invasive protocol proved feasible, effective and adequate for daily clinical practice, allowing for the estimation of patient-specific compliance and distensibility of peripheral arteries and veins. If further extended, it may contribute to the fabrication of biohybrid arterio-venous grafts, paving the way towards patient-tailored solutions for vascular access.
DOI: 10.6084/m9.figshare.21976316
title: CBFiM Systematic Map.xlsx

description: Systematic map for '<strong>Community-Based Fire Management in East and Southern African Savanna-Protected Areas: A Review of the Published Evidence' </strong>(Croker et al. 2023) <br> To explore whether the framing, nature, and extent of CBFiM in savanna-protected areas across East and Southern Africa differs conditionally on type of governance system, we applied a social-ecological systems approach to systematically review the published evidence on Scopus and Web of Science. <br> This systematic map followed the Collaboration for Environmental Evidence’s Version 5.0 review and synthesis protocol. We applied the following search string under the Topic Subject of Title, Abstract, and Keywords: <br> <em>("community-based" OR "community" OR "traditional" OR "indigenous" OR "local" OR "integrated" OR "comanag*" OR "co-manag*" OR "bottom-up" OR "bottom up" OR "coloni*" OR "pastoral*" OR "governance" OR "institution*" OR "poli*" OR "management") AND ("fire*" OR "burn*" OR "wildfire*") AND ("savanna*" OR "grass*"OR "wildland*" OR "grazing land*”) AND (“Africa*" OR "Angola" OR "Botswana" OR "Burundi" OR "Ethiopia" OR "Kenya" OR "Lesotho" OR "Madagascar" OR "Malawi" OR "Mozambique" OR "Namibia" OR "Rwanda" OR "Somalia" OR "Somaliland" OR "South Africa" OR "Swaziland" OR "Eswatini" OR "Tanzania" OR "Uganda" OR "Zambia" OR "Zimbabwe")</em>
DOI: 10.5281/zenodo.7584745
title: Variant Calling Files supporting leptospira analysis

description: This data set contains the results of a variant calling analysis performed on 20 samples named X_SX for sample 1 to 16 and named B3288_2 B3288_8 B3288_10 and B3288_16 for samples named 17 to 20. All variant calling analysis were performed with Sequana variant calling pipeline (https://github.com/sequana/variant_calling) but only the final VCF files are provided in this dataset. One VCF file per sample and per reference genome used. There were 273 core genomes used; Therefore we have here 273 time 20 VCF files. In the summary directory one can also find the CSV files for SNPs and INDELs that were extracted from the VCF files using several filtering (depth of 10, strand balance &gt;0.2, min frequency &gt;=0.5). More information and notebooks generating and using those files can be found here: https://github.com/biomics-pasteur-fr/manuscript_capture_leptospira/ A tagged version of this github repository is provided as version 1 : manuscript_capture_leptospira-1.tar.gz
description: Notebooks used to analyse the VCF (generate the summary CSV files) are available https://github.com/biomics-pasteur-fr/manuscript_capture_leptospira/
DOI: 10.5281/zenodo.7584744
title: Variant Calling Files supporting leptospira analysis

description: This data set contains the results of a variant calling analysis performed on 20 samples named X_SX for sample 1 to 16 and named B3288_2 B3288_8 B3288_10 and B3288_16 for samples named 17 to 20. All variant calling analysis were performed with Sequana variant calling pipeline (https://github.com/sequana/variant_calling) but only the final VCF files are provided in this dataset. One VCF file per sample and per reference genome used. There were 273 core genomes used; Therefore we have here 273 time 20 VCF files. In the summary directory one can also find the CSV files for SNPs and INDELs that were extracted from the VCF files using several filtering (depth of 10, strand balance &gt;0.2, min frequency &gt;=0.5). More information and notebooks generating and using those files can be found here: https://github.com/biomics-pasteur-fr/manuscript_capture_leptospira/ A tagged version of this github repository is provided as version 1 : manuscript_capture_leptospira-1.tar.gz
description: Notebooks used to analyse the VCF (generate the summary CSV files) are available https://github.com/biomics-pasteur-fr/manuscript_capture_leptospira/