cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/nb27pnjtsg
title: Azathioprine therapy induces selective NK cell depletion and IFN-γ deficiency predisposing to herpesvirus reactivation

description: Full spectrum cytometry data of PBMCs of longitudinal Myasthenia gravis patient samples before and after azathioprine therapy initiation. Additionally, the data contains samples of internal controls: three healthy individuals, two patients before/after mycophenolate treatment. In addition to data of unmanipulated cells (surface panel) intracellular cytokine expression was determined in PBMCs after ex vivo activation using phorbol 12-myristate 13-acetate and ionomycin (intracellular cytokine panel).
DOI: 10.6084/m9.figshare.12449153.v3
title: Seed plant phylogeny

description: Seed plant chloroplast phylogeny
DOI: 10.6084/m9.figshare.1592791.v1
title: Affect of human traffic and urbanization on insect abundance and traffic

description: This experiment is looking at abundance and diversity of insects and if that is affected by human activity in high and low traffic areas at York University. High traffic areas are defined as areas that no ground is showing ie the ground is covered by concrete and more than 5 people walk by going in one direction in 10 seconds. The low traffic areas are deemed by having no person walk through the area during 1 minute and having nature ie trees, shrubs, grass and no concrete on the ground.Three locations were visited each week for two weeks, October 14th and 21st. The three locations of low traffic are are the woodlot behind Osgood Law School, the Danby woods/woodlot and the woods/woodlot surrounding Stong Pond. The high traffic areas in front of Lassonde School of Engineering, in front of Vari Hall/the bus loop and in front of Stong college. The 4 group members spilt into teams of 2 for time conservation since some of the locations were on opposite sides of York Univeristy. At each location,10 pan traps were placed and collected at 1.5 hours. The pan traps were undisturbed for the full 1.5 hours. The locations of the pan traps were randomly selected and placed 1 meter apart. The pan traps were placed within the brushes at each location to unsure the highest number of bugs caught and for location of high traffic so no person would kick or knock over the trap. The insect abundance and diveristy using RTU's were recorded. We are observing how much of an impact has human activity affected biotic-biotic interactions.
DOI: 10.6084/m9.figshare.21308457.v1
title: Global greenhouse gas emissions and projected global mean temperature rise

description: Global greenhouse gas emissions and projected global mean temperature rise, estimated by this publication: Deng S, Deng X, Griscom B, Li T, Yuan W, Qin Z. Can nature help limit warming below 1.5℃? Global change biology. 2022.
DOI: 10.6084/m9.figshare.23635173.v2
title: Tooth wear in diabetic population

description: data represents tooth wear-attrition, erosion and abrasion in diabetic patients and its impact on quality of life.
DOI: 10.6084/m9.figshare.28562921.v1
title: Source data of the paper entitled 'Repeated application of cutaneous high-frequency electrical stimulation prolongs the time course of secondary hyperalgesia '

description: Source Data of the manuscript
DOI: 10.6084/m9.figshare.6817361.v1
title: Additional file 1: of Tau GSTs involved in regulation of leaf abscission by comparison the gene profiling of MeGSTs in various abscission-promoting treatments in cassava abscission zones

description: Data 1. Primers used in qRT-PCR analysis. (XLS 39 kb)
DOI: 10.6084/m9.figshare.7314896.v1
title: A supervised machine learning method to classify Dutch-language news items

description: <b>Please contact s.a.m.vermeer@uva.nl for questions or further information. </b><br><br><i>Background</i>Based on a supervised machine learning method, we developed a classifier in Python (version 3.5.2) that returns the news topic of Dutch-language news items (as a string). To train the classifier, we collected more than 1 million news items from approximately 150 different Dutch-language news websites, as well as search engines and social media, collected over 8 months in 2017/18.This tool can be used for mapping Dutch-news items into different news categories, namely: (1) Politics, which covers items about <i>internal politics, international politics, </i>and<i> military </i>and <i>defense; </i>(2) Business, includes <i>economy, education, and health, welfare and social services; </i>(3) Entertainment, covers <i>sports, culture, fashion </i>and <i>human interest; </i>and (4) Other, includes <i>science and technology, environment, communication, weather </i>and<i> religion and beliefs. </i><i><br></i><i>Performance</i>We used three different pre-processing steps, resulting in three different <b>.pkl </b>modules: (1) All text: '<i>...text_Dutch_news.pkl</i>', (2) Stop word removal: '...<i>stopword_Dutch_news.pkl</i>', and (3) Lead: '...<i>lead_Dutch_news.pkl</i>'.For every text category, the classifier reached an accuracy, precision and recall of at least .<b>81</b>. <br><i>Usage</i>The classifiers have been developed in Python 3.5.2, and scikit-learn 0.19.2, and can be used as follows:-- clf=joblib.load('PassiveAggressive_text_Dutch_news.pkl')-- topic=clf.predict([text]) #text is a news item<br>Susan VermeerDamian TrillingSanne KruikemeierClaes de Vreese
DOI: 10.6084/m9.figshare.19076831.v1
title: Supplementary Material for: Outcomes after Prolonged Weaning in Chronic Obstructive Pulmonary Disease Patients: Data from the German WeanNet Initiative

description: <b><i>Background:</i></b> The outcome of prolonged weaning in COPD patients is still unclear. <b><i>Methods:</i></b> A subgroup analysis of 2,937 COPD patients (median: age 69 years, 5 comorbidities, 43% female) from the entire WeanNet cohort of specialized German weaning centers previously published (<i>N</i> = 11,424) was performed. <b><i>Results:</i></b> Weaning outcomes were as follows: successful weaning without subsequent long-term noninvasive ventilation (NIV): <i>N</i> = 900; 30.6%; successful weaning with subsequent long-term NIV: <i>N</i> = 900; 30.6%; weaning failure with subsequent long-term invasive ventilation: <i>N</i> = 780; 26.6%; and death: <i>N</i> = 357; 12.2%. Most important predictors of mortality and weaning failure were advanced age and duration of mechanical ventilation in the transferring ICU, respectively. On discharge, the tracheostoma was closed in only 53% and 59% of patients with successful weaning not receiving and receiving long-term NIV, respectively. Unsuccessfully weaned patients were predominantly discharged home (20.5%) or to long-term care facilities (57.2%). Successfully weaned patients were predominantly discharged home (22.4%/35.9%: without/with NIV) and to rehabilitation (41.0%/43.1%: without/with NIV), respectively. <b><i>Conclusion:</i></b> COPD forms an important subgroup of prolonged weaning patients. Following transfer from the ICU to a specialized weaning center, weaning is successful more than 60%. Importantly, both tracheostomy status and initial destination following discharge are highly dependent on the weaning outcome.
DOI: 10.6084/m9.figshare.26285491.v1
title: Supplemental_Files1-4

description: Supplemental Files 1 - 4 in Excel format for "Revisiting the y-ome of <i>Escherichia coli"</i>
DOI: 10.6084/m9.figshare.7907348.v1
title: gVCF_HG03539

description: 1000 Genomes gVCF mapped to hs37d5 for HG03539. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.20577447.v2
title: Letter of Credence from Prince Regent George IV to Emperor Jiaqing (1816)

description: In the <em>Letter of Credence from Prince Regent George IV to Emperor Jiaqing</em> (1816), the Prince Regent expressed his wishes to improve British trade conditions at Canton and asked the emperor to receive his ambassador, Lord Amherst. The prince’s letter was translated by Robert Morrison, a British translator serving the British government (Q. Zhuang, 2013, p. 74).
DOI: 10.6084/m9.figshare.21375804.v1
title: Vortex Height Dataset - TC-RADAR

description: Dataset made available for "Observed Relationships between Tropical Cyclone Vortex Height, Intensity, and Intensification Rate" which has been accepted for publication at Geophysical Research Letters. <br> Full Authors List: Alexander J. DesRosiers, Michael M. Bell, Philip J. Klotzbach, Michael S. Fischer, and Paul D. Reasor <br> CSV contains relevant data to the pulication and the README file contains information about column names. <br> Data generated using the TC-RADAR dataset (version v3j) found at: https://www.aoml.noaa.gov/ftp/pub/hrd/data/radar/level3/
DOI: 10.6084/m9.figshare.28147886.v1
title: Data in VCF format for single nucleotide polymorphisms (SNPs) of <i>Haplocladium microphyllum</i> populations

description: Data in VCF format for single nucleotide polymorphisms (SNPs) of <i>Haplocladium microphyllum </i>populations
DOI: 10.6084/m9.figshare.9730100.v2
title: Dating of the upper Stormberg Group: Datasets and Supplementary Materials for the 'Chronostratigraphic framework for the upper Stormberg Group: implications for the Triassic-Jurassic boundary in southern Africa' - Bordy et al. 2020

description: These are supplementary files to a project aimed at reviewing the stratigraphy of the upper Stormberg Group and providing its first chronostratigraphic framework. https://doi.org/10.1016/j.earscirev.2020.103120<br>The available data on Figshare include:(1) Supplement Text 1 - detailed information on the geochronological procedure (additional methods), geochronological results for each sample, and the key to animal and track outlines in Figure 2 (MS Word text file);(2) Supplemental Table S1 - complete data set of geochronological measurements for each sample and standards (MS Excel data file);(3) Supplemental Figure S1 – illustrations, for each sample, of the relative-age-probability plots (or probability density plots; PDP), concordia diagrams, and Isoplot of weighted mean date with 2σ internal error bars.<br><b>Project abstract</b>:The upper Stormberg Group (Elliot and Clarens formations) of the main Karoo Basin is well-known for its fossil vertebrate fauna, comprising early branching members of lineages including mammals, dinosaurs, and testudinates. Despite 150 years of scientific study, the upper Stormberg Group lacks radioisotopic age constraints and remains coarsely dated via imprecise faunal correlations. Here we synthesise previous litho- and magnetostratigraphic studies, and present a comprehensive biostratigraphic review of the upper Stormberg fauna. We also present the results of the first geochronological assessment of the unit across the basin, using U-Pb dates derived from detrital zircons obtained from tuffaceous sandstones and siltstones, the youngest of which are considered maximum depositional ages. Our results confirm that the Elliot Formation contains the Triassic–Jurassic boundary, making it one of the few fossiliferous continental units that records the effects of the end-Triassic Mass Extinction event. Our work suggests a mid-Norian–Rhaetian age for the lower Elliot Formation and a Hettangian–Sinemurian age for the upper Elliot Formation, although the precise stratigraphic position of the Triassic/Jurassic (Rhaetian/Hettangian) boundary remains somewhat uncertain. A mainly Pliensbachian age is obtained for the Clarens Formation. The new dates allow direct comparison with better-calibrated Triassic-Jurassic faunas of the Western Hemisphere (e.g., Chinle and Los Colorados formations). We show that sauropodomorph, but not ornithischian or theropod, dinosaurs were well-established in the main Karoo Basin ~220 million years ago, and that typical Norian faunas (e.g., aetosaurs, phytosaurs) are either rare or absent in the lower Elliot Formation, which is paucispecific compared to the upper Elliot. While this is unlikely the result of geographic sampling biases, it could be due to historical sampling intensity differences.<br> <br>
DOI: 10.17632/3s3v46phv7
title: Corporate governance and integrated reporting quality

description: Meta-analytical data on the relationship between integrated reporting quality (IRQ) and corporate governance variables.
DOI: 10.17632/kwb8s3khbw
title: Survey dataset on the perfectionism, academic resilience, and subjective well-being in one university students, South Korea

description: The data of this article was done to identify the correlation among perfectionism, academic resilience and subjective well-being and identify factors that affect the subjective in undergraduate students. Data were collected from 245 students in one university located S city in South Korea.
DOI: 10.21942/uva.24894654.v1
title: Social status and unethical behavior: Two replications of the field studies in Piff et al. (2012)

description: Prominent social psychologists and major media outlets have put forward the notion that people of high socioeconomic status (SES) are more selfish and behave more unethically than people of low SES. In contrast, other research in economics and sociology has hypothesized and found a positive relationship between SES and prosocial and ethical behavior. We review the empirical evidence for these contradictory findings and conduct two direct, well-powered, and preregistered replications of the field studies by Piff and colleagues (2012) to test the relationship between SES and unethical/selfish behavior. Unlike the original findings, we find no evidence of a positive relationship between SES and unethical/selfish behavior in the two field replication studies. (PsycInfo Database Record (c) 2023 APA, all rights reserved).
DOI: 10.6084/m9.figshare.12489743.v1
title: Multiple sequence alignment for identification of positive selection

description: Multiple sequence alignment of genes used for identification of positive diversifying selection
DOI: 10.6084/m9.figshare.13157867.v1
title: Supplement, data and code "Evaluating water- and health-related development projects: A cross-project and micro-based approach"

description: This fileset contains the supplement, the data and the replication code for the paper "Evaluating water- and health-related development projects: A cross-project and micro-based approach".<br><br>Abstract: We present a micro-based approach to evaluate the effect of water- and health-related development projects which complements established evaluation methods. We collect information from 1.8 million individuals from DHS clusters (Demographic and Health Surveys) in 38 developing economies between 1986 and 2017. By geocodes, we combine cluster information with over 14,000 sub-national projects from the World Bank. We then investigate the impact of the projects employing fixed effects estimation techniques. Our findings indicate that the time to gather water and child mortality tend to decrease when projects are realized. The quality of drinking water and sanitation facilities are also positively affected by projects. Our data allows us to account for cluster heterogeneity, which is an important extension to the cross-country literature. Various robustness checks support our findings.<br>
DOI: 10.6084/m9.figshare.24638538.v1
title: SchiSOFT: A global dataset on species occurrences and functional traits of Schizothoracinae fish

description: SchiSOFT (Schizothoracinae fish Species Occurrences and Functional Traits) dataset was based on published literature, books, online databases, and field surveys, including a full species and image sources list, occurrence data, and detailed functional traits data for schizothoracine fish. The dataset includes 7,333 occurrence records and 3,204 records of 32 functional traits covering all the genera and species of Schizothoracinae fish (i.e., 12 genera and 125 species or subspecies) and image sources of 120 species or subspecies. Sampling records spanned over 180 years. This dataset will serve as a valuable resource for future research on the evolution, historical biogeography, responses to environmental change, and conservation of the Schizothoracinae fish.
DOI: 10.6084/m9.figshare.26510239.v1
title: Basnak et al., network simulation data

description: Data generated from simulated neural networks, used to create figures in Basnak et al. (2024). <i>Multimodal cue integration and learning in a neural map of head direction</i>. The associated network simulation and figure plotting code can be found in the associated Github repository.
DOI: 10.6084/m9.figshare.27013468.v1
title: Expression genes (FPKM&gt;0.3) of Salix brachista

description: Expression genes (FPKM&gt;0.3) of Salix brachista among seven organs.
DOI: 10.6084/m9.figshare.27088792.v2
title: Data_Alves AG et al_Protected_areas_04_2025.xlsx

description: We investigated the contributions of Protected areas (PAs) and Other Effective area-based Conservation Measures (OECMs) to the environmental, economic and social dimensions of sustainable development through a global meta-analysis.
DOI: 10.6084/m9.figshare.28296971.v1
title: Supplementary Material for: First intrapartum sonographic diagnosis of fetal hypoxic ischemic encephalopathy (FHIE)

description: Novel Insights
In presence of cardiotocographic features suspected for hypoxic insult, intrapartum ultrasound in the hands of experienced operators can demonstrate cerebral edema as an indirect sign of fetal hypoxia affecting the fetal CNS and exclude non-hypoxic conditions potentially leading to abnormalities of the fetal heart rate.
Introduction
Hypoxic-ischemic encephalopathy is a syndrome involving the fetal central nervous system as the result of a perinatal hypoxic-ischemic injury. To date, transfontanellar ultrasound represents the first line exam in neonates with clinical suspicion of HIE as it allows to show features indicating acute hypoxic injury and exclude potential non-hypoxic determinants of HIE, however there is no report concerning the sonographic assessment of the brain during labor. In this clinical case we report the intrapartum sonographic evaluation of the fetal brain as a tool for the differential diagnosis of cardiotocographic abnormalities.
Case Presentation
A 42-year-old para 2 woman underwent labor induction at 37+3 weeks due to preeclampsia. On admission cardiotocography was normal, as was umbilical artery Doppler. De novo changes of the CTG pattern prior to the onset of labor raised the suspicion of a supervening fetal cerebral insult leading to the decision to expedite delivery by emergency cesarean. During the preparation for delivery, intrapartum ultrasound allowed to demonstrate fetal cerebral edema representing an early sign of superimposed intrapartum acute hypoxic insult in the context of chronic antepartum hypoxia and exclude non-hypoxic conditions of cardiotocographic abnormalities. 
Conclusion
This is the first intrapartum sonographic demonstration of imaging findings consistent with cerebral edema in a fetus at risk for in utero hypoxia, hence suspected for fetal hypoxic ischemic encephalopathy (FHIE). Intrapartum ultrasound can assist clinicians in the differential diagnosis of intrapartum fetal hypoxia as long as it does not delay any interventions required to prevent hypoxic injury.
DOI: 10.6084/m9.figshare.3558801.v1
title: Appendix A. Taxonomic authorities, origin, and primary habitat type for species in the study.

description: Taxonomic authorities, origin, and primary habitat type for species in the study.
DOI: 10.17632/68nvs9cwmy
title: 16S amplicon sequencing for Franklin et al.

description: This is the 16S amplicon sequencing data for Franklin et al. (submitted)
DOI: 10.17632/kvt23pmynt
title: enseñanza de reparación de reparación de resinas en RD

description: Este conjunto de datos presenta información sobre la enseñanza de la reparación de resinas compuestas en las escuelas de odontología en la República Dominicana. Se incluyen respuestas de docentes responsables de los programas de operatoria dental y odontología restauradora en 12 universidades (una pública y once privadas). Los datos fueron recopilados mediante un cuestionario estructurado que evaluó la inclusión del tema en el currículo, los métodos de enseñanza empleados y las percepciones sobre la importancia de esta técnica en la formación de los futuros odontólogos.
Los datos han sido analizados utilizando estadísticas descriptivas y se presentan en formatos adecuados para su exploración y uso en estudios comparativos o revisiones sobre educación odontológica.
DOI: 10.6084/m9.figshare.18865418.v1
title: Neonatal Resuscitation: Measuring The Readiness of Healthcare Personnel

description: Data from Neonatal Resuscitation: Measuring The Readiness of Healthcare Personnel study
DOI: 10.6084/m9.figshare.21953051.v1
title: Data_Polymer dispersed liquid crystals as moldable shape programmable material.rar

description: Raw data relevant to research article titled 'Polymer-dispersed liquid crystal elastomers as moldable shape-programmable material
DOI: 10.6084/m9.figshare.28677275.v1
title: Flow cytometry.rarIntegrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink

description: database for artical uploaded :"Integrated Bioprinting of Trachea-Like Structures Based on Tissue-Specific bioink"
DOI: 10.6084/m9.figshare.29107931.v1
title: manuscript_clock.R

description: EPIGENETIC CLOCK MODELING FOR DIAPAUSE METHYLATION DATA<br>SUMMARYThis script builds an elastic net regression model to predict biological age (in days) based on DNA methylation profiles from a diapause experiment in <i>Nasonia vitripennis.</i> It uses univariate feature pre-selection, elastic net via glmnet, and includes performance evaluation, coefficient extraction, and visualization.<br>INPUT DATA- Erin's methylation data: erindata_v2.txt- Time-related differentially methylated loci (DMLs): un.dmls.timepoint.txt<br>MAIN STEPS1. Load and preprocess methylation data.2. Filter CpGs based on external list of DMLs.3. Optionally pre-select features using univariate Pearson correlation with age.4. Transpose data to a modeling-friendly format (samples as rows).5. Scale CpG features and remove highly correlated ones.6. Create dummy variables for treatment group.7. Fit an elastic net model with repeated cross-validation (caret + glmnet).8. Generate predictions, performance metrics, and plots.9. Extract and save non-zero coefficients from the final model.<br>MODEL DETAILS- Model: Elastic Net (alpha = 0.5)- Tuning: Lambda optimized over exponential grid (log scale)- Cross-validation: 10-fold CV repeated 3 times- Target: Age in days ("day" column)<br>OUTPUT FILES- glmnet_erin_only_uniCorrCpGs_figure.pdf: Predicted vs actual age plot- glmnet_erin_only_uniCorrCpGs_final_model.rds: Trained glmnet model object- glmnet_erin_only_uniCorrCpGs_predictions_data.csv: Prediction + metadata- glmnet_erin_only_uniCorrCpGs_coefficients.csv: Non-zero CpG features<br>EXCEL EXPORTS (commented out in script)- Table_S1_Age_DMPs: CpGs from timepoint DML list- Table_S2_Age_Correlated: Age-correlated CpGs used in modeling- Table_S3_Clock_Coefficients: Non-zero coefficients from final model<br>DEPENDENCIES- R packages: data.table, dplyr, caret, glmnet, ggplot2, openxlsx2, emmeans, vip, Metrics- Parallel backend: doParallel + foreach<br>NOTES- Pre-selection is based on |correlation| &gt; 0.3 and p-value &lt;= 0.05- Age prediction is visualized separately for Control and Diapause samples- Post-hoc emmeans analysis compares predicted age by treatment group across days<br>HOW TO RUNEnsure input files are present and paths are correctly set. Then run the script from R.Parallel processing will use all available cores minus one.<br><br>Contact: Eamonn Mallon, ebm3@le.ac.uk<br>
DOI: 10.6084/m9.figshare.5998616.v1
title: Jucker et al. (2018) Ecology Letters

description: Data used in Jucker et al. (2018) Ecology Letters, in press
DOI: 10.6084/m9.figshare.7726226.v1
title: t. Fig7.pdf

description: 치료 효과에 대한 항 종양 면역 분석. <b> </b>용해 - 마이크로 바늘 패치로드 OVA에 의한 예방 접종 후 1 주 1 × 10 <sup>5</sup> EG7 - OVA 종양 세포는 종양 도전을 접종 하였다. (A) 항 종양 면역 요법을위한 실험 계획 (B) 마우스의 종양 체적을 측정하여 종양 성장을 모니터 하였다. 각 그룹에서 해부 된 종양 조직의 사진도 표시됩니다. (C) 각 그룹에서 해부 된 종양 조직의 종양 무게 또한 나타내었다. 데이터는 그룹당 4 마리의 마우스의 평균 ± SD로 나타내었다. <sup>#</sup> p &lt;0.05, <sup>##</sup> p &lt;0.01 또는 <sup>###</sup> p &lt;0.001 대조군 패치 그룹 대 OVA 패치 그룹.