cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14761794.v1
title: Supplementary Material for: Impact of Physician Training Level on Neonatal Tracheal Intubation Success Rates and Adverse Events: A Report from National Emergency Airway Registry for Neonates (NEAR4NEOS)

description: <b><i>Introduction:</i></b> Neonatal tracheal intubation (TI) outcomes have been assessed by role, but training level may impact TI success and safety. Effect of physician training level (PTL) on the first-attempt success, adverse TI-associated events (TIAEs), and oxygen desaturation was assessed. <b><i>Methods:</i></b> Prospective cohort study in 11 international NEAR4NEOS sites between October 2014 and December 2017. Primary TIs performed by pediatric/neonatal physicians were included. Univariable analysis evaluated association between PTL, patient/practice characteristics, and outcomes. Multivariable analysis with generalized estimating equation assessed for independent association between PTL and outcomes (first-attempt success, TIAEs, and oxygen desaturation ≥20%; attending as reference). <b><i>Results:</i></b> Of 2,608 primary TIs, 1,298 were first attempted by pediatric/neonatal physicians. PTL was associated with patient age, weight, comorbidities, TI indication, difficult airway history, premedication, and device. First-attempt success rate differed across PTL (resident 23%, fellow 53%, and attending 60%; <i>p</i> &lt; 0.001). There was no statistically significant difference in TIAEs (resident 22%, fellow 20%, and attending 25%; <i>p</i> = 0.34). Desaturation occurred more frequently with residents (60%), compared to fellows and attendings (46 and 53%; <i>p</i> &lt; 0.001). In multivariable analysis, adjusted odds ratio of the first-attempt success was 0.18 (95% CI: 0.11–0.30) for residents and 0.80 (95% CI: 0.51–1.24) for fellows. PTL was not independently associated with adjusted odds of TIAEs or severe oxygen desaturation. <b><i>Conclusion:</i></b> Higher PTL was associated with increased first-attempt success but not TIAE/oxygen desaturation. Identifying strategies to decrease adverse events during neonatal TI remains critical.
DOI: 10.5281/zenodo.4917675
title: The impact of flood sequencing in vegetated braided rivers, JRA1-HULL-Task 8.5, Total Environment Simulator, University of Hull

description: This data storage report explains the methodology for a series of experiments conducted as part of the Hydralab Joint Research Activity called RECIPE to investigate the response of physical modelling experiments to climate change drivers. Links are provided to the key datasets collected during the experiments. The experiments are designed to elucidate the influence of flood sequences on braided rivers with erodible banks under different vegetated conditions. The experiments had two specific objectives<br> The experiments were carried out in order to address the following specific objectives:<br> 1. To quantify the impacts of flood sequences on channel morphology with different hydrograph inputs,<br> 2. To determine the role of vegetation growth/age on the impact of flood sequences
DOI: 10.5281/zenodo.4917674
title: The impact of flood sequencing in vegetated braided rivers, JRA1-HULL-Task 8.5, Total Environment Simulator, University of Hull

description: This data storage report explains the methodology for a series of experiments conducted as part of the Hydralab Joint Research Activity called RECIPE to investigate the response of physical modelling experiments to climate change drivers. Links are provided to the key datasets collected during the experiments. The experiments are designed to elucidate the influence of flood sequences on braided rivers with erodible banks under different vegetated conditions. The experiments had two specific objectives<br> The experiments were carried out in order to address the following specific objectives:<br> 1. To quantify the impacts of flood sequences on channel morphology with different hydrograph inputs,<br> 2. To determine the role of vegetation growth/age on the impact of flood sequences
DOI: 10.25505/fiz.icsd.cc1xtypc
title: CSD 1782614: Experimental Crystal Structure Determination

description: Related Article: D., C., Freitas, , R., B., Guimarães, , J., C., Fernandes, , M., A., Continentino, , C., B., Pinheiro, , J., A., L., C., Resende, , G., G., Eslava, , L., Ghivelder|2010|Phys.Rev.B|81|174403|
DOI: 10.25505/fiz.icsd.cc1xtynb
title: CSD 1782613: Experimental Crystal Structure Determination

description: Related Article: D., C., Freitas, , R., B., Guimarães, , J., C., Fernandes, , M., A., Continentino, , C., B., Pinheiro, , J., A., L., C., Resende, , G., G., Eslava, , L., Ghivelder|2010|Phys.Rev.B|81|174403|
DOI: 10.18112/openneuro.ds003690.v1.0.0
title: EEG, ECG and pupil data from young and older adults: rest and auditory cued reaction time tasks
DOI: 10.5281/zenodo.4812404
title: Natural environment statistics in the upper and lower visual field are reflected in mouse retinal specializations

description: Dataset for Qiu et al., 2020. The raw data of mouse footage are in the zip folder "mouse_footage" and other data are for analysis. See here for more details. This work was supported by the German Research Foundation (DFG) through Collaborative Research Centre CRC 1233 (project number 276693517; sub project 10); the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant (agreement No 674901); and the Max Planck Society (M.FE.A.KYBE0004); the German Ministry of Research and Education (01GQ1002). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
DOI: 10.5281/zenodo.4812403
title: Natural environment statistics in the upper and lower visual field are reflected in mouse retinal specializations

description: Dataset for Qiu et al., 2020. The raw data of mouse footage are in the zip folder "mouse_footage" and other data are for analysis. See here for more details. This work was supported by the German Research Foundation (DFG) through Collaborative Research Centre CRC 1233 (project number 276693517; sub project 10); the European Union’s Horizon 2020 research and innovation programme under the Marie Skłodowska-Curie grant (agreement No 674901); and the Max Planck Society (M.FE.A.KYBE0004); the German Ministry of Research and Education (01GQ1002). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.
DOI: 10.6084/m9.figshare.14562321
title: SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data

description: Supporting data for ‘SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data’ as published in <i>Microbial Genomics</i>.
DOI: 10.6084/m9.figshare.14562321.v1
title: SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data

description: Supporting data for ‘SplitStrains, a tool to identify and separate mixed Mycobacterium tuberculosis infections from WGS data’ as published in <i>Microbial Genomics</i>.
DOI: 10.15129/10523ca4-2c98-4d77-8575-06d97ba66621
title: Data for: "The Effect of Added Ligands on the Reactions of [Ni(COD)(dppf)] with Alkyl Halides: Halide Abstraction May Be Reversible"

description: Raw data for the 2021 Organometallics paper "The Effect of Added Ligands on the Reactions of [Ni(COD)(dppf)] with Alkyl Halides: Halide Abstraction May Be Reversible". DOI: 10.1021/acs.organomet.1c00280. Further details on the data are available in a Readme file included. (1) Coordinates and energies from DFT studies can be obtained via the ioChem-BD repository at the following DOI: 10.19061/iochem-bd-1-208. (2) GC data for all reactions is provided in the form of PDFs for each sample, as well as calibration data. These files can be opened with any software that can open PDFs. (3) NMR data to support product characterisation and for kinetic experiments is provided in Bruker Topspin format and can be opened with this software. Alternatively the 'fid' file in each dataset can be opened using any software capable of processing NMR spectroscopy free induction decay data. The GC and NMR data is organised according to the order in which appears in the Supporting Information file associated with the manuscript. This can be obtained for free via the ACS website using the DOI noted above.
DOI: 10.6084/m9.figshare.13573523
title: In vitro exploration of Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes.

description: Supplementary Material for ‘In vitro exploration of Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes’ as published in Microbial Genomics.<br>
DOI: 10.6084/m9.figshare.13573523.v1
title: In vitro exploration of Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes.

description: Supplementary Material for ‘In vitro exploration of Xanthomonas hortorum pv. vitians genome using transposon insertion sequencing and comparative genomics to discriminate between core and contextual essential genes’ as published in Microbial Genomics.<br>
DOI: 10.6084/m9.figshare.13584902
title: Rapid molecular evolution of Spiroplasma symbionts of 2 Drosophila

description: Supplementary Material for ‘Rapid molecular evolution of <i>Spiroplasma</i> symbionts of <i>Drosophila</i>’ as published in <i>Microbial Genomics</i>.
DOI: 10.6084/m9.figshare.13584902.v1
title: Rapid molecular evolution of Spiroplasma symbionts of 2 Drosophila

description: Supplementary Material for ‘Rapid molecular evolution of <i>Spiroplasma</i> symbionts of <i>Drosophila</i>’ as published in <i>Microbial Genomics</i>.
DOI: 10.6084/m9.figshare.14030075
title: Functional analysis of colonisation factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonisation

description: <b>Supplementary Material for 'Functional analysis of colonisation factor antigen I positive enterotoxigenic <i>Escherichia coli</i> identifies genes implicated in survival in water and host colonisation' as published in <i>Microbial Genomics</i></b><br>
DOI: 10.6084/m9.figshare.14761854
title: Supplementary Material for: Transdiagnostic versus Diagnosis-Specific Group Cognitive Behavioral Therapy for Anxiety Disorders and Depression: A Randomized Controlled Trial

description: <b><i>Introduction:</i></b> The Unified Protocol for Transdiagnostic Treatment of Emotional Disorders (UP) delivered in a group format could facilitate the implementation of evidence-based psychological treatments. <b><i>Objective:</i></b> This study compared the efficacy of group UP and diagnosis-specific cognitive behavioral therapy (dCBT) for anxiety and depression in outpatient mental health services. <b><i>Methods:</i></b> In this pragmatic, multi-center, single-blinded, non-inferiority, randomized controlled trial (RCT), we assigned 291 patients with major depressive disorder, social anxiety disorder, panic disorder, or agoraphobia to 14 weekly sessions in mixed-diagnosis UP or single-diagnosis dCBT groups. The primary test was non-inferiority, using a priori criteria, on the World Health Organisation 5 Well-Being Index (WHO-5) at the end of the treatment. Secondary outcomes were functioning and symptoms. We assessed outcomes at baseline, end-of-treatment, and at a 6-month follow-up. A modified per-protocol analysis was performed. <b><i>Results:</i></b> At end-of-treatment, WHO-5 mean scores for patients in UP (<i>n</i> = 148) were non-inferior to those of patients in dCBT (<i>n</i> = 143; mean difference –2.94; 95% CI –8.10 to 2.21). Results were inconclusive for the WHO-5 at the 6-month follow-up. Results for secondary outcomes were non-inferior at end-of-treatment and the 6-month follow-up. Client satisfaction and rates of attrition, response, remission, and deterioration were similar across conditions. <b><i>Conclusions:</i></b> This RCT demonstrated non-inferior acute-phase outcomes of group-delivered UP compared with dCBT for major depressive disorder, social anxiety disorder, panic disorder, and agoraphobia in outpatient mental health services. The long-term effects of UP on well-being need further investigation. If study findings are replicated, UP should be considered a viable alternative to dCBT for common anxiety disorders and depression in outpatient mental health services.
DOI: 10.6084/m9.figshare.14030075.v1
title: Functional analysis of colonisation factor antigen I positive enterotoxigenic Escherichia coli identifies genes implicated in survival in water and host colonisation

description: <b>Supplementary Material for 'Functional analysis of colonisation factor antigen I positive enterotoxigenic <i>Escherichia coli</i> identifies genes implicated in survival in water and host colonisation' as published in <i>Microbial Genomics</i></b><br>
DOI: 10.6084/m9.figshare.14384225
title: Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection

description: Supplementary Material for ‘Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic <i>Vibrio cholerae</i> infection’ as published in <i>Microbial Genomics</i>
DOI: 10.6084/m9.figshare.14384225.v1
title: Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic Vibrio cholerae infection

description: Supplementary Material for ‘Genomic contextualisation of ancient DNA molecular data from an Argentinian fifth pandemic <i>Vibrio cholerae</i> infection’ as published in <i>Microbial Genomics</i>
DOI: 10.6084/m9.figshare.14761848
title: Supplementary Material for: Atezolizumab and Bevacizumab in Patients with Unresectable Hepatocellular Carcinoma: Pharmacokinetic and Safety Assessments Based on Hepatic Impairment Status and Geographic Region

description: <b><i>Introduction:</i></b> Phase 1b GO30140 and phase 3 IMbrave150 studies evaluated first-line atezolizumab + bevacizumab for unresectable hepatocellular carcinoma (HCC). Here, we evaluated pharmacokinetics (PK) and safety by hepatic impairment status and geographic region. <b><i>Methods:</i></b> Patients received atezolizumab 1,200 mg + bevacizumab 15 mg/kg IV every 3 weeks. Drug concentrations were evaluated by descriptive statistics and population PK. PK and adverse event frequencies were evaluated by hepatic impairment status and region. <b><i>Results:</i></b> 323 IMbrave150 patients and 162 GO30140 patients were PK evaluable. Compared with IMbrave150 patients who had normal hepatic function per the National Cancer Institute Organ Dysfunction Working Group (NCI-ODWG) criteria (<i>n</i> = 123), patients with mild impairment (<i>n</i> = 171) had a geometric mean ratio (GMR) of 0.92 for cycle 1 atezolizumab area under the concentration-time curve (AUC); patients with moderate impairment (<i>n</i> = 27) had a GMR of 0.88. Patients in Asia ([<i>n</i> = 162] vs. outside [<i>n</i> = 161]) had a GMR of 1.25 for cycle 1 atezolizumab AUC. Compared with GO30140 patients who had normal hepatic function (NCI-ODWG [<i>n</i> = 61]), patients with mild impairment (<i>n</i> = 92) had a GMR of 0.97 for cycle 1 peak bevacizumab concentrations; those with moderate impairment (<i>n</i> = 9) had a GMR of 0.94. Patients in Asia (<i>n</i> = 111) versus outside Asia (<i>n</i> = 51) had a GMR of 0.94 for cycle 1 peak bevacizumab concentration. PK results were generally comparable when evaluated based on additional hepatic functional definitions (Child-Pugh or albumin/bilirubin criteria) or study enrollment in Japan. No associations between atezolizumab PK and HCC etiology were seen. Adverse event frequencies were similar across evaluated groups. <b><i>Conclusions:</i></b> IMbrave150 and GO30140 patients with unresectable HCC had varying baseline hepatic impairment and high enrollment from Asia. PK data demonstrated considerable exposure overlap across groups. Treatment was tolerable across groups. No need for dose adjustment based on mild or moderate hepatic impairment or region is recommended based on this analysis.
DOI: 10.6084/m9.figshare.14414126
title: Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432

description: Supplementary Material for ‘Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432’ as published in <i>Microbial Genomics</i>.<br><br>
DOI: 10.6084/m9.figshare.14414126.v1
title: Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432

description: Supplementary Material for ‘Comparative genomics of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) reveals lineage-specific host adaptation of ST432’ as published in <i>Microbial Genomics</i>.<br><br>
DOI: 10.6084/m9.figshare.14448249
title: Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon

description: Supplementary Material for ‘Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon’ as published in <i>Microbial Genomics</i>.<br>
DOI: 10.5281/zenodo.4774046
title: Applying deep learning to estimate violin-bow's gestural patterns

description: Eight bow-strokes were recorded by musicians following a musical score with a fixed metronome tempo of quarter-notes at 80 bpm. All gestures were established in G, primarily in the major mode except for tremolo (G minor) and col legno (chromatic). On the violin, two octaves from G3 to G5 covers the whole neck and also all four strings. Eight musicians participated in the recording sessions, with expert models constructed using the data from five violinists; the other three participants were reserved as test cases. The recordings are part of a collaboration with the Royal College of Music in London. Please cite the following publication when using the dataset: Dalmazzo D, Waddell G and Ramírez R (2021) Applying Deep Learning Techniques to Estimate Patterns of Musical Gesture. <em>Front. Psychol.</em> 11:575971. doi: 10.3389/fpsyg.2020.575971 The implementation code is available here.
DOI: 10.5281/zenodo.4774045
title: Applying deep learning to estimate violin-bow's gestural patterns

description: Eight bow-strokes were recorded by musicians following a musical score with a fixed metronome tempo of quarter-notes at 80 bpm. All gestures were established in G, primarily in the major mode except for tremolo (G minor) and col legno (chromatic). On the violin, two octaves from G3 to G5 covers the whole neck and also all four strings. Eight musicians participated in the recording sessions, with expert models constructed using the data from five violinists; the other three participants were reserved as test cases. The recordings are part of a collaboration with the Royal College of Music in London. Please cite the following publication when using the dataset: Dalmazzo D, Waddell G and Ramírez R (2021) Applying Deep Learning Techniques to Estimate Patterns of Musical Gesture. <em>Front. Psychol.</em> 11:575971. doi: 10.3389/fpsyg.2020.575971 The implementation code is available here.
DOI: 10.6084/m9.figshare.14761707
title: the BSP of DLK1_R .zip

description: This is the sequencing data about the methylation level of DLK1_R in 25 TOF patients and 5 controls.
DOI: 10.6084/m9.figshare.14761707.v3
title: the BSP of DLK1_R .zip

description: This is the sequencing data about the methylation level of DLK1_R in 25 TOF patients and 5 controls.
DOI: 10.6084/m9.figshare.14761707.v2
title: the BSP of DLK1_R .zip

description: This is the sequencing data about the methylation level of DLK1_R in 25 TOF patients and 5 controls.
DOI: 10.6096/mistrals-hymex-moose.1613
title: Temperature and salinity 25m, Azur Buoy

description: Temperature and salinity at ~25 m depth. The salinity is derived from conductivity; both parameters are provided
DOI: 10.5281/zenodo.4701303
title: Towards understanding the characteristics of new particle formation in the Eastern Mediterranean

description: <strong>Dataset abstract</strong> The authors highly appreciate being contacted if the data is to be used for any purpose. The following data set was used in the study entitled "Towards understanding the characteristics of new particle formation in the Eastern Mediterranean" and published in <em>Atmospheric Chemistry and Physics</em> Journal. This study explored new particle formation in Eastern Mediterranean based on one year of measurements of particle number concentrations starting from ~1nm in addition to complementary meteorological and gas measurements. This dataset was measured/calculated based on measurements at the Cyprus Atmospheric Observatory - Agia Marina Xyliatou (CAO-AMX) station (https://cao.cyi.ac.cy/agia-marina-xyliatou/). CAO-AMX is one of the Climate and Atmosphere Research Centre (CARE-C) research infrastructure stations. Please refer to the manuscript and its supplementary material for more information about how the data was collected and curated. <strong>Dataset contents:</strong> The dataset is arranged in tables having .txt format It contains: hourly meteorological data, hourly air quality data, hourly size-binned particle number concentrations, hourly particle formation rates, hourly condensation sinks, daily particle growth rates, daily NPF classification, daily sector analysis at 6:00 am UTC The meteorological data and the gas data were provided by the Department of Labour Inspection (DLI) of the Ministry of Labour, Welfare, and Social Insurance of Cyprus. <strong>Dataset license</strong> The dataset is made available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) whose full text can be found at https://creativecommons.org/licenses/by/4.0/
DOI: 10.5281/zenodo.4701302
title: Towards understanding the characteristics of new particle formation in the Eastern Mediterranean

description: <strong>Dataset abstract</strong> The authors highly appreciate being contacted if the data is to be used for any purpose. The following data set was used in the study entitled "Towards understanding the characteristics of new particle formation in the Eastern Mediterranean" and published in <em>Atmospheric Chemistry and Physics</em> Journal. This study explored new particle formation in Eastern Mediterranean based on one year of measurements of particle number concentrations starting from ~1nm in addition to complementary meteorological and gas measurements. This dataset was measured/calculated based on measurements at the Cyprus Atmospheric Observatory - Agia Marina Xyliatou (CAO-AMX) station (https://cao.cyi.ac.cy/agia-marina-xyliatou/). CAO-AMX is one of the Climate and Atmosphere Research Centre (CARE-C) research infrastructure stations. Please refer to the manuscript and its supplementary material for more information about how the data was collected and curated. <strong>Dataset contents:</strong> The dataset is arranged in tables having .txt format It contains: hourly meteorological data, hourly air quality data, hourly size-binned particle number concentrations, hourly particle formation rates, hourly condensation sinks, daily particle growth rates, daily NPF classification, daily sector analysis at 6:00 am UTC The meteorological data and the gas data were provided by the Department of Labour Inspection (DLI) of the Ministry of Labour, Welfare, and Social Insurance of Cyprus. <strong>Dataset license</strong> The dataset is made available under the Creative Commons Attribution 4.0 International License (CC BY 4.0) whose full text can be found at https://creativecommons.org/licenses/by/4.0/
DOI: 10.6096/mistrals-hymex-moose.1614
title: Temperature and salinity 50m, Azur Buoy

description: Temperature and salinity at ~50 m depth. The salinity is derived from conductivity; both parameters are provided