cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/5txxwj2g6b.2
title: Data for: Permutation Flow Shop Scheduling with Multiple Lines and Demand Plans Using Reinforcement Learning

description: Contains the datasets used in our study "Permutation Flow Shop Scheduling with Multiple Lines and Demand Plans Using Reinforcement Learning". Three datasets are provided. The main dataset (folder data) contains 1050 problem instances for the multi-line permutation flow shop problem. The generation follows the method of Taillard (1993) and generates random processing times in the interval [1,99]. To create the demand plan we draw randomly from a multinomial distribution with equal probability for each job type. The two additional datasets (folder data_lin and data_exp ) contain 150 problem instances each for the multi-line permutation flow shop problem with demand plans that are generated using a linear or exponential distribution. Dataset structure Each PFSP dataset of the main study is structured in 15 subfolders. Each folder contains problem instances for a combination of line layout and processing time variation. Notation: Tai_PFSP_AL_B / Tai_D_PFSP_AL_B A: Number of Lines (1-3) B: Number of processing time variation (1-5) Each folder contains 70 problem instances. A problem file is a combination of one problem characteristic (number of jobs, machines and stations) and a demand plan variation. The processing times are fixed for one problem characteristic. Notation: tCD_E_F_G_H.mix C: Number of Lines (1-3) D: Number of problem characteristic (1-7) E: Number of jobs (20,100,500) F: Number of machines (5,10,20) G: Number of sorts (5,10,20) H: Number of demand plan variation (1-10) Each file represents a different problem in text format. Line Notation: L1: Demand plan L2: Layout Type L3: Number of machines L4: Number of machines per line L5: Number of total machines with synchronization machine L6: Number of sorts L7-end: Processing times matrix for the combination of machine (row) and job type (column) 1. Taillard, E. (1993). Benchmarks for basic scheduling problems. European Journal of Operational Research, 64 (2), 278-285.
DOI: 10.17632/bb4xjj3fbt.1
title: Menci et al. JDS - Supplementary data

description: Supplementary table - Cheese fatty acid profile
DOI: 10.15468/cmwb4m
title: A review of the South American species of Heilus Kuschel, 1955 (Curculionidae Molytinae: Molytini: Hylobiina) with emphasis on those from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lira, Aline De Oliveira, Sousa, Wesley Oliveira De, Rosado-Neto, Germano Henrique, Santos, Geane Brizzola Dos, Marques, Marinêz Isaac (2020): A review of the South American species of Heilus Kuschel, 1955 (Curculionidae Molytinae: Molytini: Hylobiina) with emphasis on those from Brazil. Zootaxa 4861 (2): 151-187, DOI: https://doi.org/10.11646/zootaxa.4861.2.1
DOI: 10.5517/ccdc.csd.cc25zkrh
title: CCDC 2025377: Experimental Crystal Structure Determination

description: Related Article: Changan Li, Gonzalo Campillo-Alvarado, Dale C. Swenson, Leonard R. MacGillivray|2021|CrystEngComm|23|1071|doi:10.1039/D0CE01885F
DOI: 10.5517/ccdc.csd.cc26x7w8
title: CCDC 2052940: Experimental Crystal Structure Determination

description: Related Article: Changan Li, Gonzalo Campillo-Alvarado, Dale C. Swenson, Leonard R. MacGillivray|2021|CrystEngComm|23|1071|doi:10.1039/D0CE01885F
DOI: 10.15468/nf99zr
title: Contribution to the knowledge of the genus Phaneroptera (Tettigoniidae Phaneropterinae) with a new record from Tamilnadu, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Divya, Govindaraj, Senthilkumar, Natchiappan (2020): Contribution to the knowledge of the genus Phaneroptera (Tettigoniidae Phaneropterinae) with a new record from Tamilnadu, India. Zootaxa 4860 (3): 425-434, DOI: https://doi.org/10.11646/zootaxa.4860.3.7
DOI: 10.5255/ukda-sn-854502
title: Exploring the changing roles, identities and wellbeing of women in small-scale fishing families, 2018-2020

description: The data collection includes anonymised interview transcripts. The interviews are narrative based interviews that focus on exploring participants biographical narratives. The data was collected throughout the UK in the year of 2019. Interviews focused on understanding the lived experiences of women in fisheries through exploring participant’s biographical narratives around what it meant for them to be part of a fishing family, or to be working in the fishery, and how this had evolved over time.
DOI: 10.15468/3y8pks
title: Ten new species of Phyllodoce Lamarck, 1818 (Phyllodocidae, Annelida) from Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Oliveira, Verônica Maria De, Magalhães, Wagner F., Lana, Paulo Da Cunha (2021): Ten new species of Phyllodoce Lamarck, 1818 (Phyllodocidae, Annelida) from Brazil. Zootaxa 4924 (1): 1-61, DOI: https://doi.org/10.11646/zootaxa.4924.1.1
DOI: 10.15468/ey949s
title: Cryptic new species of Nesoecia Scudder, 1893 (Orthoptera: Tettigoniidae Pseudophyllinae) from northeastern, Mexico

description: This dataset contains the digitized treatments in Plazi based on the original journal article Barrientos-Lozano, Ludivina, Rocha-Sánchez, Aurora Y., Fernández- Azuara, Geovany J., Sánchez-Reyes, Uriel Jeshua, Almaguer-Sierra, Pedro (2020): Cryptic new species of Nesoecia Scudder, 1893 (Orthoptera: Tettigoniidae Pseudophyllinae) from northeastern, Mexico. Zootaxa 4859 (4): 451-486, DOI: https://doi.org/10.11646/zootaxa.4859.4.1
DOI: 10.15468/vkfc9f
title: Description of a new species of Cosmocerca Diesing, 1861 (Nematoda Cosmocercidae) in Hoplobatrachus crassus (Jerdon, 1853) (Anura: Dicroglossidae from Asansol coal-field area, West Bengal, India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Banerjee, Siddharthasankar, Sou, Sujan Kumar (2020): Description of a new species of Cosmocerca Diesing, 1861 (Nematoda Cosmocercidae) in Hoplobatrachus crassus (Jerdon, 1853) (Anura: Dicroglossidae from Asansol coal-field area, West Bengal, India. Zootaxa 4859 (2): 293-299, DOI: https://doi.org/10.11646/zootaxa.4859.2.8
DOI: 10.15468/cesw5t
title: A correction to a recent review of the genus Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from Angola, with the description of two additional species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ceríaco, Luis M. P., Agarwal, Ishan, Marques, Mariana P., Bauer, Aaron M. (2020): A correction to a recent review of the genus Hemidactylus Goldfuss, 1820 (Squamata: Gekkonidae) from Angola, with the description of two additional species. Zootaxa 4861 (1): 92-106, DOI: https://doi.org/10.11646/zootaxa.4861.1.6
DOI: 10.7273/k0hn-gy79
title: Parenteral antimicrobial treatment diminishes fecal Bifidobacterium quantity but has no impact on health in neonatal dairy calves: Data from a field trial
DOI: 10.5281/zenodo.4506310
title: Example dataset MINTIF semantic segmentation

description: This data set serves as an example for the application of the MINTIF plugin(https://github.com/CAiM-lab/MiNTiF). Users can test the data set creation, training, prediction, and reconstruction functionality on this data set. The pretrained model will predict semantic segmentation masks for Arteries and Sinusoids based using the markers DAPI, Endomucin, CXCL12, Endoglin and Collagen as input. <strong>training data</strong> contains the original training images to train a model <strong>pretrained model and test data </strong>contains a pretrained model and data to apply this model on <strong>pretrained model </strong>contains the files of a pretrained model, use MINTIF to apply this model to test.h5 <strong>info_channel_indices.txt </strong>contains the marker channels used in this dataset and the corresponding indices to use in MNINTIF. <strong>original_file.ims</strong> is the original image file before conversion to test.h5 <strong>test.h5</strong> is the MINTIF file converted from original_file.ims. Predict on this file <strong>recostructed_with_prediction.tiff </strong>is the image in test.h5 reconstructed after prediction. It now contains two additional channel with the predciction channels
DOI: 10.5281/zenodo.4534458
title: Dataset related to article "PLGA Based Nanoparticles for the Monocyte-Mediated Anti-Tumor Drug Delivery System"

description: This record contains data related to article “PLGA Based Nanoparticles for the Monocyte-Mediated Anti-Tumor Drug Delivery System" Abstract Together with the development of new therapeutic agents, innovation in the delivery system of anti-tumor drugs is required to increase tumor-specificity and avoid unexpected toxicity. To achieve higher efficiency, we combined a live cell-mediated drug delivery system with nanotechnology, with the aim to prove that blood monocytes can be a cargo to deliver antitumor drugs encapsulated in Polymeric poly(D, L-lactide-co-glycolide) acid based nanoparticles (PLGA NPs). In this study, we have characterized how isolated purified monocytes efficiently internalize PLGA-NPs and have imaged <em>in vivo</em> their trafficking upon intravenous injection in tumor-bearing mice. Monocytes carrying PLGA-Cy7 NPs were able to reach the tumor site, with superior efficiency than free PLGA-Cy7 NPs, and the bio-distribution analysis confirmed that tumors were the most reached among peripheral tissues. We further demonstrate that monocytes carrying Doxorubicin encapsulated PLGA NPs (PLGA-Doxo) induced strong killing of co-cultured tumor cells. Our studies provide proof-of-concept evidence that monocytes can be exploited in approaches of live cell-mediated drug delivery systems for tumor therapy.
DOI: 10.5281/zenodo.4534457
title: Dataset related to article "PLGA Based Nanoparticles for the Monocyte-Mediated Anti-Tumor Drug Delivery System"

description: This record contains data related to article “PLGA Based Nanoparticles for the Monocyte-Mediated Anti-Tumor Drug Delivery System" Abstract Together with the development of new therapeutic agents, innovation in the delivery system of anti-tumor drugs is required to increase tumor-specificity and avoid unexpected toxicity. To achieve higher efficiency, we combined a live cell-mediated drug delivery system with nanotechnology, with the aim to prove that blood monocytes can be a cargo to deliver antitumor drugs encapsulated in Polymeric poly(D, L-lactide-co-glycolide) acid based nanoparticles (PLGA NPs). In this study, we have characterized how isolated purified monocytes efficiently internalize PLGA-NPs and have imaged <em>in vivo</em> their trafficking upon intravenous injection in tumor-bearing mice. Monocytes carrying PLGA-Cy7 NPs were able to reach the tumor site, with superior efficiency than free PLGA-Cy7 NPs, and the bio-distribution analysis confirmed that tumors were the most reached among peripheral tissues. We further demonstrate that monocytes carrying Doxorubicin encapsulated PLGA NPs (PLGA-Doxo) induced strong killing of co-cultured tumor cells. Our studies provide proof-of-concept evidence that monocytes can be exploited in approaches of live cell-mediated drug delivery systems for tumor therapy.
DOI: 10.5281/zenodo.4524959
title: Data and Code from: Tuning as a means of assessing the benefits of new ideas in interplay with existing algorithmic modules

description: This is the code and data used in the paper "Tuning as a means of assessing the benefits of new ideas in interplay with existing algorithmic modules". See the included readme file for more details.
DOI: 10.5281/zenodo.4524958
title: Data and Code from: Tuning as a means of assessing the benefits of new ideas in interplay with existing algorithmic modules

description: This is the code and data used in the paper "Tuning as a means of assessing the benefits of new ideas in interplay with existing algorithmic modules". See the included readme file for more details.
DOI: 10.4228/zalf.dk.161
title: Dataset of ecosystem services hot- and coldspots for the utilized agricultural area of the Märkisch-Oderland District-Brandenburg, Germany

description: The dataset contains the indicators of occurrence (0, 1) of hotspots and coldspots for six ecosystem services provision for the utilized agricultural area of the Märkisch-Oderland District (NUTS3) in east Brandenburg, Germany. The six ecosystem services are: i) biomass production (PRO), ii) water storage (WAS), iii) carbon stock total (CST), iv) carbon stock potential (CSP), v) habitat for species (HAB), and vi) landscape attractiveness (LAT). In addition, the dataset contains two composite indicators for the sum of the six ecosystem services’ hotspots and coldspots (range 1-6), which indicate the total number of services of high or low quality, respectively. The data set has 140,116 entries, each one corresponding to a 1 ha size cell (100 m x 100 m), whose centroid coordinates are provided according to the EPSG:4839 - ETRS89/LCC Germany (N-E) – Projected coordinate system for Germany. In addition, the dataset provides information about landscape unit, dominant land cover, dominant soil and cadastral parcel (Digitales Feldblockkataster des Landes Brandenburg 2020, DFBK20/BB).
description: The description of the methods to assess the six indicators is given in Ungaro et al. (2020, https://www.doi.org/10.4228/ZALF.DK.154 ). The terms “hotspots” and “coldspots” are here used in the sense of areas that provide large or small components of a particular service. Different approaches can be used to assess and delineate hotspots and coldspots on maps. In this case, ranging the indicators along a scale from 0 to 1, we considered the upper and lower quartiles of the observed indicators distribution, as physical thresholds wouldn't be meaningful. Hotspots were then identified, assuming a value equal to 1, and mapped for each single indicator as areas where their normalized values are above the 75th percentile of observed distribution i.e. the grid cell values that are on the top 25% of all cells. Similarly, coldspots were identified and mapped for each single indicator as areas where their normalized values are below the 25th percentile of observed distribution i.e. the grid cell values that are on the bottom 25% of all cells.
DOI: 10.6084/m9.figshare.13953518
title: Lab 4: Editing and Creating Shapefiles

description: Files for Lab 4 Creating and Editing Shapefiles in UWSP's WATR 391/591 course
DOI: 10.5281/zenodo.4115562
title: COVID-19: Early detection using K-Means and DBSCAN algorithms on real-time patient data

description: This release features the dataset recorded using our prototype hardware device (contact-based) that collects accelerometer and temperature readings to investigate breathing patterns, personal activity and cough patterns. As fever and cough are considered as two of the most common symptoms for COVID-19, our aim was to focus on these physiological features. In addition, research also states that all COVID-19 contractions showed elevated breathing patterns in patients, that could be easily identifiable from Eupnea state. Therefore, in this research project, we aimed at:<br> 1. Designing a prototype chest-worn device to measure dynamic chest movements (to record breathing and cough patterns)<br> 2. Detect different activity patterns<br> 3. Record temperature variations during idle and active stage<br> 4. Using unsupervised machine learning algorithm to detect anomalies by creating a composite score for (breathing and cough patterns as well as temperature). This release also features some code examples that were used for data pre-processing, feature identification and anomaly detection using (K-means and DBSCAN algorithms). It is important to note that this dataset should be considered and further investigated for preliminary exploratory analysis. The data was collected from healthy adults (that did not undergo COVID-19 clinical screening tests). Therefore, it must be clearly identified that this dataset DOES NOT represent positive COVID-19 contractions.
description: The dataset is self explanatory with different fields representing different states of the sensors. If unsure, please feel free to email the authors.
DOI: 10.5281/zenodo.4537710
title: Microsatellite dataset Dysaphis plantaginea

description: -30 microsatellite dataset <em>Dysaphis plantaginea</em> -ABCRF scripts and inputs -PCA scripts and inputs -splitstree scripts and inputs -scripts to plot distribution of membership coefficient inferred from STRUCTURE
DOI: 10.5281/zenodo.4537709
title: Microsatellite dataset Dysaphis plantaginea

description: -30 microsatellite dataset <em>Dysaphis plantaginea</em> -ABCRF scripts and inputs -PCA scripts and inputs -splitstree scripts and inputs -scripts to plot distribution of membership coefficient inferred from STRUCTURE
DOI: 10.5281/zenodo.4537823
title: Dataset - Interactive vibrotactile feedback enhances the perceived quality of a surface for musical expression and the playing experience

description: This dataset comprises the logged data generated by the participants in the experiment, their evaluation of the setup, and a script in the R language for statistical analysis, as described in the companion manuscript. The data were collected in September/October 2019 in an experiment measuring the perceived quality and playing experience of the HSoundplane, a digital musical interface offering auditory and vibrotactile feedback. The participants were 29 students of keyboard instruments in professional training.
DOI: 10.5281/zenodo.4028637
title: Dataset - Interactive vibrotactile feedback enhances the perceived quality of a surface for musical expression and the playing experience

description: This dataset comprises the logged data generated by the participants in the experiment, their evaluation of the setup, and a script in the R language for statistical analysis, as described in the companion manuscript. The data were collected in September/October 2019 in an experiment measuring the perceived quality and playing experience of the HSoundplane, a digital musical interface offering auditory and vibrotactile feedback. The participants were 29 students of keyboard instruments in professional training.
DOI: 10.6084/m9.figshare.13953854
title: Use of Amazonian Mauritia flexuosa fruit pulp as chemoprotectant against ammonia and nitrite toxicity to juvenile shrimps Litopenaeus vannamei

description: This study investigated the effects of the ammonia and nitrite toxicity in shrimp <i>Litopenaeus vannamei </i>juveniles fed diets containing Amazonian <i>Mauritia flexuosa</i> fruit pulp. The post-larvae (PL) shrimps (weight 5.0 ± 0.3 mg) were fed with five diets (36% protein, 10% lipid), containing 0 (Control group), 1.25, 2.50, 5.00, and 10.00% (W/W) of <i>M. flexuosa</i> fruit pulp inclusion (1 shrimp L<sup>-1</sup>, tank of 100 L, treatments in triplicate) for 43 days. After this period, the juvenile shrimps (weight 396.00 ± 0.35 mg) were randomly distributed among 30 tanks with 30 L of useful volume, containing 20 shrimps per tank and exposed (96 h) to ammonia (0.48 mg NH<sub>3</sub>-N L<sup>-1</sup>) and nitrite (40 mg NO<sub>3</sub> L<sup>-1</sup>) toxicity, in triplicate. Measured variables were the total antioxidant capacity (ACAP), lipid peroxidation (TBARS), reduced glutathione (GSH) levels and concentration of protein sulfhydryl groups (P-SH). The results indicated a significant increase (<i>p</i>&lt;0.05) in ACAP, when shrimps were fed 2.50 and 5.00% (ammonia exposure), or 5.00 and 10.00% (nitrite exposure) of <i>M. flexuosa</i> inclusion. Similarly, lipid peroxidation levels were lower (<i>p</i>&lt;0.05) in shrimps exposed to ammonia or nitrite and fed the inclusion of 2.50-10.00% of <i>M. flexuosa</i> in the diet. The GSH levels increased (<i>p</i>&lt;0.05) in shrimps that were exposed to ammonia and fed 10% of <i>M. flexuosa</i>. However, there was no significant difference (<i>p</i>&gt;0.05) in the P-SH levels, after both ammonia and nitrite exposure. It was concluded that the use of <i>Mauritia flexuosa</i> improves the resilience of <i>Litopenaeus vannamei</i> to cope with ammonia and nitrite toxicity and indicates its use as a chemoprotectant against toxic nitrogenous compounds. Particularly, the conspicuous TBARS reduction after nitrite exposure and augmented GSH levels in ammonia-exposed shrimps previously supplemented with <i>M. flexuosa </i>fruit pulp suggest a hormetic response.
DOI: 10.6084/m9.figshare.13953854.v1
title: Use of Amazonian Mauritia flexuosa fruit pulp as chemoprotectant against ammonia and nitrite toxicity to juvenile shrimps Litopenaeus vannamei

description: This study investigated the effects of the ammonia and nitrite toxicity in shrimp <i>Litopenaeus vannamei </i>juveniles fed diets containing Amazonian <i>Mauritia flexuosa</i> fruit pulp. The post-larvae (PL) shrimps (weight 5.0 ± 0.3 mg) were fed with five diets (36% protein, 10% lipid), containing 0 (Control group), 1.25, 2.50, 5.00, and 10.00% (W/W) of <i>M. flexuosa</i> fruit pulp inclusion (1 shrimp L<sup>-1</sup>, tank of 100 L, treatments in triplicate) for 43 days. After this period, the juvenile shrimps (weight 396.00 ± 0.35 mg) were randomly distributed among 30 tanks with 30 L of useful volume, containing 20 shrimps per tank and exposed (96 h) to ammonia (0.48 mg NH<sub>3</sub>-N L<sup>-1</sup>) and nitrite (40 mg NO<sub>3</sub> L<sup>-1</sup>) toxicity, in triplicate. Measured variables were the total antioxidant capacity (ACAP), lipid peroxidation (TBARS), reduced glutathione (GSH) levels and concentration of protein sulfhydryl groups (P-SH). The results indicated a significant increase (<i>p</i>&lt;0.05) in ACAP, when shrimps were fed 2.50 and 5.00% (ammonia exposure), or 5.00 and 10.00% (nitrite exposure) of <i>M. flexuosa</i> inclusion. Similarly, lipid peroxidation levels were lower (<i>p</i>&lt;0.05) in shrimps exposed to ammonia or nitrite and fed the inclusion of 2.50-10.00% of <i>M. flexuosa</i> in the diet. The GSH levels increased (<i>p</i>&lt;0.05) in shrimps that were exposed to ammonia and fed 10% of <i>M. flexuosa</i>. However, there was no significant difference (<i>p</i>&gt;0.05) in the P-SH levels, after both ammonia and nitrite exposure. It was concluded that the use of <i>Mauritia flexuosa</i> improves the resilience of <i>Litopenaeus vannamei</i> to cope with ammonia and nitrite toxicity and indicates its use as a chemoprotectant against toxic nitrogenous compounds. Particularly, the conspicuous TBARS reduction after nitrite exposure and augmented GSH levels in ammonia-exposed shrimps previously supplemented with <i>M. flexuosa </i>fruit pulp suggest a hormetic response.
DOI: 10.6084/m9.figshare.8041409
title: Dreissena_rostriformis_bugensis_contigs_sequences

description: Transcriptome contigs of Dreissena polymorpha in fasta format
DOI: 10.6084/m9.figshare.8041409.v2
title: Dreissena_rostriformis_bugensis_contigs_sequences

description: Transcriptome contigs of Dreissena polymorpha in fasta format
DOI: 10.6084/m9.figshare.8041406
title: Dreissena_polymorpha_contigs_sequences

description: Transcriptome contigs of Dreissena rostriformis bugensis in fasta format
DOI: 10.6084/m9.figshare.8041409.v1
title: Dreissena_polymorpha_contigs_sequences

description: Transcriptome contigs of Dreissena polymorpha in fasta format
DOI: 10.6084/m9.figshare.8041406.v1
title: Dreissena_rostriformis_bugensis_contigs_sequences

description: Transcriptome contigs of Dreissena rostriformis bugensis in fasta format
DOI: 10.6084/m9.figshare.13954096
title: Table S1. Antarctic Peninsula and South Shetland Islands: petrology

description: Representative analyses from the Antarctic Peninsula volcanic arc
DOI: 10.6084/m9.figshare.13954096.v1
title: Table S1. Antarctic Peninsula and South Shetland Islands: petrology

description: Representative analyses from the Antarctic Peninsula volcanic arc