cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25390/caryinstitute.19139942
title: Cary Forest Plot Data 1993 to 1999

description: This dataset is a contribution to the Cary Institute of Ecosystem Studies. The Cary Forest Plots were established in 1984 as part of The Cary Vegetation Study, which described the vegetation of the then Cary Arboretum. The project established 76 permanent plots referred to as the "Cary Forest Plots". Data collection in the plots was extensive and included a survey of mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses, tree ring data and physical descriptions of each plot. Subsequent re-surveys of the plots were done in 20 of the 76 original plots as part of the Forest Response to Stress and Damage (FORSTAD) project, which took place over approximately 10 years in the 1990’s. These surveys included an annual canopy census of trees. Canopy census data were also collected in other plots studied in the FORSTAD project, including Nutrient Cycling Plots A & B and in the control plots in the Yellow, Teahouse grid and the Red, Henry Grid. Another resurvey of 43 of the Cary Forest Plots was done in 2006 by Dan Katz as part of his Research Experience for Undergraduates (REU) project and his senior thesis project at Bard College. His surveys included mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses. This repository includes canopy census data from 20 of the Cary Forest Plots from the 1993-1999 FORSTAD project.The Cary Institute of Ecosystem Studies furnishes data under the following conditions: The data have received quality assurance scrutiny, and, although we are confident of the accuracy of these data, Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Cite button on the Figshare repository.<br>Those wishing to publish data from Cary Institute of Ecosystem Studies, Cary Forest Plots are encouraged to contact the data manager at datamanagement@caryinstitute.org.<br>
DOI: 10.25390/caryinstitute.19139942.v1
title: Cary Forest Plot Data 1993 to 1999

description: This dataset is a contribution to the Cary Institute of Ecosystem Studies. The Cary Forest Plots were established in 1984 as part of The Cary Vegetation Study, which described the vegetation of the then Cary Arboretum. The project established 76 permanent plots referred to as the "Cary Forest Plots". Data collection in the plots was extensive and included a survey of mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses, tree ring data and physical descriptions of each plot. Subsequent re-surveys of the plots were done in 20 of the 76 original plots as part of the Forest Response to Stress and Damage (FORSTAD) project, which took place over approximately 10 years in the 1990’s. These surveys included an annual canopy census of trees. Canopy census data were also collected in other plots studied in the FORSTAD project, including Nutrient Cycling Plots A & B and in the control plots in the Yellow, Teahouse grid and the Red, Henry Grid. Another resurvey of 43 of the Cary Forest Plots was done in 2006 by Dan Katz as part of his Research Experience for Undergraduates (REU) project and his senior thesis project at Bard College. His surveys included mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses. This repository includes canopy census data from 20 of the Cary Forest Plots from the 1993-1999 FORSTAD project.The Cary Institute of Ecosystem Studies furnishes data under the following conditions: The data have received quality assurance scrutiny, and, although we are confident of the accuracy of these data, Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Cite button on the Figshare repository.<br>Those wishing to publish data from Cary Institute of Ecosystem Studies, Cary Forest Plots are encouraged to contact the data manager at datamanagement@caryinstitute.org.<br>
DOI: 10.34740/kaggle/dsv/3171403
title: Mahanagar Yatayat Dataset
DOI: 10.5255/ukda-sn-855234
title: Behavioural Data For the Study 'Stop-Change Training Effects On Food Liking, Cravings and Choice Behaviour', 2021

description: In this study we assessed the efficacy of a novel behavioural paradigm that employs the principles of inhibitory control training for eating-related behaviours. In a between-group design participants were trained to either stop their responses towards selected foods that were high in fat, sugar and/or salt (stop group) or change their initiated response from these foods to items that were considered 'healthier' (stop-change group). This paradigm was developed in an effort to capture the real-world behaviour of 'food-swaps' where following a healthier diet on a daily basis does not only involve reducing or stopping consumption of energy-dense foods but also choosing healthier alternatives. We tested whether training would influence participants' subjective evaluations of selected foods both in terms of liking and state cravings. We also examined whether training would affect participants' impulsive food choice behaviour whereby they choose foods associated with stop responses less frequently and foods associated with change responses more frequently. The data uploaded here are raw csv files that require further data pre-processing from the abovementioned study in the ESRC Project ES/V011030/1.
DOI: 10.6084/m9.figshare.18666458
title: Supplementary Table 1

description: Description of all variants for the genes ABO, CCR9, CXCR6, FYCO1, LZTFL1, SLC6A20, and XCR1 found in the 64 individuals sampled in the present study.
DOI: 10.6084/m9.figshare.18666458.v2
title: Supplementary Table 1

description: Description of all variants for the genes ABO, CCR9, CXCR6, FYCO1, LZTFL1, SLC6A20, and XCR1 found in the 64 individuals sampled in the present study.
DOI: 10.6084/m9.figshare.18666458.v1
title: Supplementary Table 1

description: Description of all variants for the genes ABO, CCR9, CXCR6, FYCO1, LZTFL1, SLC6A20, and XCR1 found in the 64 individuals sampled in the present study.
DOI: 10.25390/caryinstitute.19139891.v1
title: Cary Forest Plot Data 2006

description: This dataset is a contribution to the Cary Institute of Ecosystem Studies. The Cary Forest Plots were established in 1984 as part of The Cary Vegetation Study, which described the vegetation of the then Cary Arboretum. The project established 76 permanent plots referred to as the "Cary Forest Plots". Data collection in the plots was extensive and included a survey of mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses, tree ring data and physical descriptions of each plot. Subsequent re-surveys of the plots were done in 20 of the 76 original plots as part of the Forest Response to Stress and Damage (FORSTAD) project, which took place over approximately 10 years in the 1990’s. These surveys included an annual canopy census of trees. Canopy census data were also collected in other plots studied in the FORSTAD project, including Nutrient Cycling Plots A & B and in the control plots in the Yellow, Teahouse grid and the Red, Henry Grid. Another resurvey of 43 of the Cary Forest Plots was done in 2006 by Dan Katz as part of his Research Experience for Undergraduates (REU) project and his senior thesis project at Bard College. His surveys included mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses. This repository includes Cary Forest Plot data from Dan Katz’s 2006 project.The Cary Institute of Ecosystem Studies furnishes data under the following conditions: The data have received quality assurance scrutiny, and, although we are confident of the accuracy of these data, Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Cite button on the Figshare repository.<br>Those wishing to publish data from Cary Institute of Ecosystem Studies, Cary Forest Plots are encouraged to contact the data manager at datamanagement@caryinstitute.org.<br>
DOI: 10.25390/caryinstitute.19139891
title: Cary Forest Plot Data 2006

description: This dataset is a contribution to the Cary Institute of Ecosystem Studies. The Cary Forest Plots were established in 1984 as part of The Cary Vegetation Study, which described the vegetation of the then Cary Arboretum. The project established 76 permanent plots referred to as the "Cary Forest Plots". Data collection in the plots was extensive and included a survey of mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses, tree ring data and physical descriptions of each plot. Subsequent re-surveys of the plots were done in 20 of the 76 original plots as part of the Forest Response to Stress and Damage (FORSTAD) project, which took place over approximately 10 years in the 1990’s. These surveys included an annual canopy census of trees. Canopy census data were also collected in other plots studied in the FORSTAD project, including Nutrient Cycling Plots A & B and in the control plots in the Yellow, Teahouse grid and the Red, Henry Grid. Another resurvey of 43 of the Cary Forest Plots was done in 2006 by Dan Katz as part of his Research Experience for Undergraduates (REU) project and his senior thesis project at Bard College. His surveys included mature trees, saplings, seedlings, shrubs and herbaceous species as well as soil analyses. This repository includes Cary Forest Plot data from Dan Katz’s 2006 project.The Cary Institute of Ecosystem Studies furnishes data under the following conditions: The data have received quality assurance scrutiny, and, although we are confident of the accuracy of these data, Cary Institute will not be held liable for errors in these data. Data are subject to change resulting from updates in data screening or models used. Data citation: Please click on the Cite button on the Figshare repository.<br>Those wishing to publish data from Cary Institute of Ecosystem Studies, Cary Forest Plots are encouraged to contact the data manager at datamanagement@caryinstitute.org.<br>
DOI: 10.5287/bodleian:a4b4gbbpy
title: The effect of mindfulness-based programmes on elite athlete mental health: A systematic review and meta-analysis
DOI: 10.5281/zenodo.6036208
title: Result files (ALLDATA): "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data"

description: Result files associated with the publication: "<strong>Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data</strong>" by Bach et al. The following files are included in the archive: Raw max-marginal predictions using LC-MS²Struct for all LC-MS² experiments of the ALLDATA setup Averaged max-marginals for the LC-MS²Struct over all SSVM models Top-k accuracies for the comparison methods (MS²+RT, ...) Ranks for the ground-truth structures predicted by Only MS² and LC-MS²Struct (molecule class analysis) Instructions: clone the repository containing the experimental scripts and analysis notebooks: https://github.com/aalto-ics-kepaco/lcms2struct_exp download the archive in this repository unpack the archive in the git-repository root directory follow the instructions given in the README.md of the git-repository to reproduce the figures, etc.
DOI: 10.25666/dataosu-2021-10-01-02
title: 1-(4-Formyl-2,6-dimethoxyphenoxy)-4-chlorobut-2-yne
title: 1-(4-Formyl-2,6-dimethoxyphenoxy)-4-chlorobut-2-yne

description: A reaction of biomass-derived aldehyde synringaldehyde and half an equivalent of 1,4-dichlorobut-2-yne was attempted in order to obtain a bis-aldehyde with an alkyne spacer. The reaction was carried out in a basic media to effect bis O-alkylation, as described in literature for the preparation of structurally similar compounds. Nevertheless, only mono alkylation was observed.
description: La réaction du syringaldehyde (aldehyde issu de la biomasse) avec un demi équivalent de 1,4-dichlorobut-2-yne a été tentée afin d'obtenir un di-aldéhyde avec un espaceur alcyne. La réaction a été conduite en milieu basique pour effectuer la di-O-alkylation, comme décrit dans la littérature pour la préparation de composés structurellement similaires. Néanmoins, seule la mono-alkylation a été observée.
description: Audience: University: master, Research
description: UpdatePeriodicity: no update
description: Experimental data: Organic synthesis
description: Données expérimentales: Synthèse organique
DOI: 10.5281/zenodo.6040060
title: Water-induced Diamond Formation at Earth's Core-Mantle Boundary

description: Experimental results
DOI: 10.5281/zenodo.6040059
title: Water-induced Diamond Formation at Earth's Core-Mantle Boundary

description: Experimental results
DOI: 10.17632/gnx85mhpdh.1
title: Role of anterior segment optical coherence tomography in scleral diseases: A review 

description: Background: Scleritis and episcleritis are an overlapping spectrum of diseases and accurate diagnosis is of utmost importance as the treatment and prognosis are vastly different. Predominantly a clinical diagnosis, the challenge lies in those cases with equivocal clinical features. Furthermore, clinical grading of scleritis is subjective and hence is neither very reliable nor reproducible. Existing modalities such as slit lamp examination and clinical photographs in scleritis describe macroanatomy but do not provide details on the microanatomy of the sclera. A recent adjusted algorithm for anterior segment optical coherence tomography (AS-OCT) imaging has improved the ability of this device to aid in the diagnosis of all the major forms of scleritis.
Purpose: To highlight the role of AS-OCT in delineating various anatomical forms of episcleritis and scleritis and explore this tool in monitoring disease course and response to therapy.
Methods: A comprehensive literature search was carried out in various medical databases using keywords AS-OCT and scleritis; AS-OCT and episcleritis; anterior segment imaging in scleritis; scleritis and episcleritis; Recent advances in anterior segment imaging. Original articles and novel reports describing the potential role of AS-OCT in the diagnosis and management of scleritis and episcleritis were included. 
Results: After a thorough assessment, it was clear that published literature lacks guidelines for uniform interpretation and also for classification and follow-up in scleritis. We describe a uniform protocol for AS-OCT image acquisition, interpretation of images and list the advantages and limitations. 
Conclusions: AS-OCT can be used to localize the level of scleral inflammation thus helping in the diagnosis of scleral inflammatory disease. It can be a valuable tool in studying progression.
DOI: 10.5281/zenodo.6037628
title: Result files (ONLYSTEREO): "Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data"

description: Result files associated with the publication: "<strong>Joint structural annotation of small molecules using liquid chromatography retention order and tandem mass spectrometry data</strong>" by Bach et al. The following files are included in the archive: Raw max-marginal predictions using LC-MS²Struct for all LC-MS² experiments of the ONLYSTEREO setup Averaged max-marginals for the LC-MS²Struct over all SSVM models Ranks for the ground-truth structures predicted by Only MS² and LC-MS²Struct (molecule class analysis) Instructions: clone the repository containing the experimental scripts and analysis notebooks: https://github.com/aalto-ics-kepaco/lcms2struct_exp download the archive in this repository unpack the archive in the git-repository root directory follow the instructions given in the README.md of the git-repository to reproduce the figures, etc.
DOI: 10.17632/c7zkz8sbmz.3
title: FabLab Global Survey dataset

description: FabLabs are digital fabrication laboratories with a strong social and educational implication. They were created in the 2000s at MIT by Professor Neil Gershenfeld in his subject "How to make (almost) anything", where students acquire the skills to design and produce their models from the digital to the physical level. FabLabs have seen a spectacular growth from 45 labs in 2010 to more than 2000 by 2022.

The democratisation of digital fabrication technologies such as CNC machines, 3D printers and laser cutters has given rise to a resurgence of the maker spirit that takes advantage of the knowledge and characteristics of Open Software and Open Hardware to design and create new solutions.

Despite its growing interest in the scientific literature, little data is available on the diversity of spaces that make up the FabLab network. This publication shows the raw data obtained from the FabLab Global Survey questionnaire (2016). The questionnaire, constructed and validated using Delphi techniques, was distributed electronically in three languages: English, French and Spanish. It contains 41 questions of various types structured in three large differentiated blocks: 

Block I: Description of the FabLab
Block II: Description of the business model
Block III: Innovation model and documentation, SWOT

The list of FabLabs registered on FabLabs.io in December 2015, with a total of 516 registered laboratories, was used for distribution. Contact information was obtained from a total of 473 emails, to which 9 additional laboratories were added whose references were obtained from different social networks. Once the invalid references were discarded, the effective population was reduced to 445 Digital Fabrication Labs contacted from which 124 responses were obtained. For the study, under scientific quality criteria, those participations that reached more than 50% of effective responses in the questionnaire were considered valid, limiting the number of responses to 95, which establishes a response rate of 21.34% of the size of the population considered. With a universe defined as that of this study, a minimum sample size of 80 effective responses was determined based on a confidence interval of 95%, setting a margin of error of 10%, considering a conservative proportion equal to 50%.

In the publication of the information obtained through the questionnaire, following requests from several participants, the anonymity of the answers was guaranteed.

The information obtained from the implementation and application of this questionnaire has been fundamental for different publications mentioned in description.


Datafiles includes:

Raw data
Screenshots of the questionnaire
Description and coding of variables
DOI: 10.5281/zenodo.6035345
title: A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in DLBCL, MCL, T-NHL, and BL, as well as pre-assembled CNV gene list

description: A complete list of variants which passed filtering described in supplemental methods, that were found in both PDX model sample and patient’s sample from which it was derived (S1A) and variants which were gained (S1B) or lost (S1C) during PDX model derivation. Gene lists for filtration of variants in genes of special interest are included in the table (S1D). Gene list for filtration of CNV changes in genes of special interest is included in the table (S1E). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, Patient AF - Allele frequency in the patient’s sample, Patient Depth – Read depth in patient’s sample, PDX AF- Allele frequency in PDX model sample, PDX Depth - Read depth in PDX sample, DLBCL - Diffuse Large B-cell lymphoma, MCL - Mantle Cell Lymphoma, TCL - T-cell lymphoma, BL – Burkitt Lymphoma, and CNV - Copy Number Variation.
DOI: 10.5281/zenodo.6035344
title: A complete list of filtered variants and gene lists of frequently and recurrently mutated genes in DLBCL, MCL, T-NHL, and BL, as well as pre-assembled CNV gene list

description: A complete list of variants which passed filtering described in supplemental methods, that were found in both PDX model sample and patient’s sample from which it was derived (S1A) and variants which were gained (S1B) or lost (S1C) during PDX model derivation. Gene lists for filtration of variants in genes of special interest are included in the table (S1D). Gene list for filtration of CNV changes in genes of special interest is included in the table (S1E). Chr - Chromosome, REF - Reference allele, ALT - Alternative allele, AA change - Amino acid change, Patient AF - Allele frequency in the patient’s sample, Patient Depth – Read depth in patient’s sample, PDX AF- Allele frequency in PDX model sample, PDX Depth - Read depth in PDX sample, DLBCL - Diffuse Large B-cell lymphoma, MCL - Mantle Cell Lymphoma, TCL - T-cell lymphoma, BL – Burkitt Lymphoma, and CNV - Copy Number Variation.
DOI: 10.17632/hhmc8t6gv7.1
title: Tissue homeostasis in sponges: quantitative analysis of cell proliferation and apoptosis. Halisarca dujardinii

description: Here we provide data underlying the upcoming publication "Tissue homeostasis in sponges: quantitative analysis of cell proliferation and apoptosis". 
These data provide a quantitative description of cell proliferation and apoptosis in intact tissues of marine sponge, Halisarca dujardinii (class Demospongiae). Tissues of Halisarca are highly proliferative, indicating either high rates of cell turnover or body growth. The main fraction of proliferating cells are choanocytes, food-entrapping flagellated cells of the aquiferous system. They also seem to be the main source of new mesohyl cells. The numbers of apoptotic cells in intact tissues are insignificant; both choanocytes and mesohyl cells undergo apoptosis.
CLSM folder contains Z-stacks obtained via confocal laser scanning microscope. Z-stacks were processed in Bitplane Imaris software
 and saved in .ems format.
Apoptosis subfolder contains Z-stacks obtained during the experiment "Investigation of apoptotic activity: staining of intact tissues". Tissues are stained with DAPI (channel 1; cell nuclei), CellEvent (channel 2; nuclei of apoptotic cells), anti-acetylated alpha-tubulin antibodies (channel 3; choanocyte flagella).
Intact tissues subfolder contains Z-stacks obtained during the experiment "Study of cell proliferation with CLSM". Tissues are stained with DAPI (channel 1; cell nuclei), EdU (channel 3; 12 hours of incubation; nuclei of S-phase cells), anti-phospho-histone 3 antibodies (channel 4; nuclei of M-phase cells), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella).
Pulse-chase subfolder contains Z-stacks obtained during the experiment "EdU tracking in Halisarca dujardinii". Tissues are stained with DAPI (channel 1; cell nuclei) and EdU (channel 2; 12 hours of incubation; nuclei of S-phase cells).
In vivo apoptosis subfolder contains Z-stacks obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspension is stained with Hoechst (channel 1; cell nuclei), CellEvent (channel 2; nuclei of apoptotic cells), TMRE (channel 3; functional mitochondria).
Flow cytometry folder contains raw .fcs files.
Cell cycle subfolder contains files obtained during the experiment "Evaluation of cell cycle distribution". Cell suspensions are stained with propidium iodide (PE-A channel).
In vivo apoptosis subfolder contains files obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspensions are stained with CellEvent (FITC-A channel) and TMRE (PE-A channel).
Apoptosis fixed contains files obtained during the experiment "Investigation of apoptotic activity in intact tissues". Cell suspensions are stained with CellEvent (FITC-A channel)