cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.871pc/3
title: Z-matrix posterior

description: Posterior draw (300 thinned iterations) of the true occurrence matrix (Z-matrix). Object saved as a sparse matrix (package 'Matrix'). True dimensional attributes are: 1106 sites x 6 years x 124 species. Order of sites and species as included in the 'covariates' file.
DOI: 10.5061/dryad.87hm1/1
title: Partner Choice Experiment

description: Data from the Partner Choice experiment
DOI: 10.5061/dryad.8b5g6/10
title: Weight_surv_corr_Competency
DOI: 10.5061/dryad.8b5g6/9
title: Settlement_Competency
DOI: 10.5061/dryad.gf533/1
title: ITS sequences of the Senecio carniolicus aggregate

description: Alignment (in NEXUS format) of ITS sequences. Sample names are of the form: Taxon acronym*_population number_individual number_clone number*_ploidy level (items indicated by an asterisk are not always given). Taxon acronyms are: car - S. carniolicus; dis - S. disjunctus; ins - S. insubricus; nor - S. noricus. See Table S1 of the paper for further details.
DOI: 10.5061/dryad.gf533/2
title: Concatenated plastid sequences of the Senecio carniolicus aggregate

description: Alignment (in NEXUS format) of concatenated plastid  sequences (1-672: psbD–trnT spacer; 673-1269: rps16–trnK spacer; 1270-2452: petL-psbE spacer; 2453-3382: rpl32–trnL spacer); multi-base pair indels coded as single base pairs for statistical parsimony analysis: see main text for details). Sample names are of the form: Taxon acronym*_population number_individual number_ploidy level (item indicated by an asterisk is not always given). Taxon acronyms are: car - S. carniolicus; dis - S. disjunctus; ins - S. insubricus; nor - S. noricus. See Table S1 of the paper for further details.
DOI: 10.5061/dryad.gf533/3
title: AFLP data matrix of the Senecio carniolicus aggregate

description: Taxon acronyms are: car - S. carniolicus; dis - S. disjunctus; ins - S. insubricus; nor - S. noricus. See Table S1 of the paper for further details.
DOI: 10.5061/dryad.gf533/4
title: R script for testing scenarios of polyploid origin from AFLP data using Cohen's d
DOI: 10.5061/dryad.sc833/1
title: R code

description: R code used for QTL mapping sex comb variation and QTL effect size estimates
DOI: 10.5061/dryad.sc833/2
title: Strain Variation Data

description: Average of distal & proximal sex comb size for individual males from 5 lines of D. subobscura
DOI: 10.5061/dryad.sc833/3
title: X-chromosome mapping file

description: rQTL-formatted data file with male genotypes from 13 loci along X-chromosome. Relative map locations also listed in row 3. Individual proximal or distal sex combs measured as prox1, distal1, prox2, distal2, and then average sex comb size (when one sex comb was lost, the remaining assumed to be average). Plate, row, and column depict location in 96-well plates, and cytoplasm indicates grandmother strain (used to test for maternal effects).
DOI: 10.5061/dryad.sc833/4
title: Mapping data file

description: rQTL-formatted data file as above but with single marker genotypes from each chromosome.
DOI: 10.5061/dryad.sc833/5
title: Courtship/ mating experiments data

description: Data include time prior to copulation (TimePreCop) and duration of copulation (TimeCop). Distal sex comb sizes given as "Bigger" and "Smaller", and the average is given as well as the difference. The file also indicates if the flies mated as well as notes. Notes like "D2=7+2" mean one distal sex comb was "broken" into two segments with 7 and 2 teeth respectively.
DOI: 10.5061/dryad.sg0k6/1
title: Megan results vampire bat virome

description: TITLE: Assigned reads from the HTS data

DESCRIPTION: MEGAN files corresponding to confirmed gammaherpervirus matching reads found within five Desmodus rotundus and Diphylla ecaudata vampire bat spleen samples. Viral assignment was performed using BLASTX against the GenBank non-redundant protein database and mapped with SMALT against a custom-built herpesviral database under a stringency of 60%. The γHV-matching reads were further selected by reciprocal BLASTX analysis using the following criteria: length of ≥100 bp, pairwise identity &gt;50%, e-value &lt;10-6, and independent hits to two different γHV proteins or at least two different regions of the same protein.
DOI: 10.5061/dryad.t1sg6/1
title: Mutual_assessment_queens

description: Raw data including size, mass, relative abundance of cuticular hydrocarbons and score of aggression. Raw data are provided in the spreadsheet "DATA" and explanations for each each column are provided in the spreadsheet "LEGEND".
DOI: 10.5061/dryad.t2462/10
title: Figure S2 2012

description: Persistence of non-permanent scratches over a four year period in dolphin number 1059. Coloured arrows point to the same marks over time. Image from 2012.
DOI: 10.5061/dryad.t2462/2
title: Figure 1B

description: Photograph of individual 1121 taken on June 20th 2011. Image 1B taken at 0942am (GMT) but after image 1A, shows a clean trailing edge. Image 1B is considered lower quality. Images 1A, 1B and 1C clearly show the same fin shape, the teeth rakes and white skin lesions that show a convincing match despite the nicks.
DOI: 10.5061/dryad.t2462/3
title: Figure 1C

description: Photograph of individual 1121 taken on June 20th 2011. Image 1C taken at 1047am (GMT) during a second encounter of the same animal, also with a clean trailing edge. Image 1C is considered a high quality shot. Images 1A, 1B and 1C clearly show the same fin shape, the teeth rakes and white skin lesions that show a convincing match despite the nicks.
DOI: 10.5061/dryad.t2462/4
title: Figure S1A

description: Photograph of individual 1121 showing matches between years - S1A, B C and D. Fin shape and large white horizontal scratches on side of dorsal fin (orange ellipse) fade but remain constant. Scratches on body (red ellipse) fade with progression through time, but are still evident in each photograph. S1A and S1B from June 2011, S1C from July 2012, S1D from June 2013. In 2012 the individual picked up a nick in the trailing edge of its fin (S1C) This nick was different to that seen in the anomalous photograph (Figure 1A) from 2011 but it remained consistent when this animal was re-sighted again in 2013 (S1D).
DOI: 10.5061/dryad.t2462/5
title: Figure S1B

description: Photograph of individual 1121 showing matches between years - S1A, B C and D. Fin shape and large white horizontal scratches on side of dorsal fin (orange ellipse) fade but remain constant. Scratches on body (red ellipse) fade with progression through time, but are still evident in each photograph. S1A and S1B from June 2011, S1C from July 2012, S1D from June 2013. In 2012 the individual picked up a nick in the trailing edge of its fin (S1C) This nick was different to that seen in the anomalous photograph (Figure 1A) from 2011 but it remained consistent when this animal was re-sighted again in 2013 (S1D).
DOI: 10.5061/dryad.t2462/6
title: Figure S1C

description: Photograph of individual 1121 showing matches between years - S1A, B C and D. Fin shape and large white horizontal scratches on side of dorsal fin (orange ellipse) fade but remain constant. Scratches on body (red ellipse) fade with progression through time, but are still evident in each photograph. S1A and S1B from June 2011, S1C from July 2012, S1D from June 2013. In 2012 the individual picked up a nick in the trailing edge of its fin (S1C) This nick was different to that seen in the anomalous photograph (Figure 1A) from 2011 but it remained consistent when this animal was re-sighted again in 2013 (S1D).
DOI: 10.5061/dryad.t2462/7
title: Figure S1D

description: Photograph of individual 1121 showing matches between years - S1A, B C and D. Fin shape and large white horizontal scratches on side of dorsal fin (orange ellipse) fade but remain constant. Scratches on body (red ellipse) fade with progression through time, but are still evident in each photograph. S1A and S1B from June 2011, S1C from July 2012, S1D from June 2013. In 2012 the individual picked up a nick in the trailing edge of its fin (S1C) This nick was different to that seen in the anomalous photograph (Figure 1A) from 2011 but it remained consistent when this animal was re-sighted again in 2013 (S1D).
DOI: 10.5061/dryad.t2462/8
title: Figure S2 1010

description: Persistence of non-permanent scratches over a four year period in dolphin number 1059. Coloured arrows point to the same marks over time. Image from 2010.
DOI: 10.5061/dryad.t2462/9
title: Figure S2 2011

description: Persistence of non-permanent scratches over a four year period in dolphin number 1059. Coloured arrows point to the same marks over time. Image from 2011.
DOI: 10.5061/dryad.t9140/6
title: RAxML_Epicephala

description: Phylogenetic hypothesis for Epicephala, recovered using maximum likelihood implemented in RAxML. Tip labels represent either specimen numbers and/or host species (in the genera Flueggea, Phyllanthus, Breynia, and Glochidion) from which specimens were reared, and are from the present study as well as Kawakita et al. (2004) Evolution, Kawakita et al. (2009) Proc. R. Soc. B, and Hembry et al. (2013) Proc. Roy. Soc. B. Many tip labels follow the Supplementary Appendix in Hembry et al. (2013) Proc. R. Soc. B. For E. lanceolaria OTUs, numbers refer to particular specimens; two-letter codes indicate collection localities (GB: Gaobangshan, LD: South China Botanical Garden, QA: Qiao Island, WT: Wutongshan); C = pupa with cocoon, NC = pupa with no cocoon. This tree corresponds to Supplementary Figure 2 in the present manuscript.
DOI: 10.5061/dryad.t9140/7
title: Epicephala_constrained.nex.con

description: Phylogenetic hypothesis for Epicephala, recovered using Bayesian inference implemented in MrBayes constrained to force monophyly of all Glochidion-associated Epicephala. Tip labels represent either specimen numbers and/or host species (in the genera Flueggea, Phyllanthus, Breynia, and Glochidion) from which specimens were reared, and are from the present study as well as Kawakita et al. (2004) Evolution, Kawakita et al. (2009) Proc. R. Soc. B, and Hembry et al. (2013) Proc. Roy. Soc. B. Many tip labels follow the Supplementary Appendix in Hembry et al. (2013) Proc. R. Soc. B. For E. lanceolaria OTUs, numbers refer to particular specimens; two-letter codes indicate collection localities (GB: Gaobangshan, LD: South China Botanical Garden, QA: Qiao Island, WT: Wutongshan); C = pupa with cocoon, NC = pupa with no cocoon. This tree was used in Shimodaira-Hasegawa tests as described in the present manuscript.
DOI: 10.5061/dryad.t9140/8
title: Epicephala_negconstrained.nex.con

description: Phylogenetic hypothesis for Epicephala, recovered using Bayesian inference implemented in MrBayes constrained to force non-monophyly of Glochidion-associated Epicephala. Tip labels represent either specimen numbers and/or host species (in the genera Flueggea, Phyllanthus, Breynia, and Glochidion) from which specimens were reared, and are from the present study as well as Kawakita et al. (2004) Evolution, Kawakita et al. (2009) Proc. R. Soc. B, and Hembry et al. (2013) Proc. Roy. Soc. B. Many tip labels follow the Supplementary Appendix in Hembry et al. (2013) Proc. R. Soc. B. For E. lanceolaria OTUs, numbers refer to particular specimens; two-letter codes indicate collection localities (GB: Gaobangshan, LD: South China Botanical Garden, QA: Qiao Island, WT: Wutongshan); C = pupa with cocoon, NC = pupa with no cocoon. This tree was used in Shimodaira-Hasegawa tests as described in the present manuscript.
DOI: 10.5061/dryad.t9140/9
title: Pollination_and_oviposition

description: Video depicting pollination of and oviposition into flowers of Glochidion lanceolarium by a female Epicephala lanceolaria moth.
DOI: 10.5061/dryad.tg0mt/1
title: Macrogen_sequence_files

description: File produced during the sequencing of the PCR products used for FISH of 5S and 28S rDNA. File names contain "5S" or "28S"  depending on what product they refer to.
DOI: 10.5061/dryad.tg0mt/2
title: C-Band
DOI: 10.5061/dryad.tm5sv/1
title: Dwarf mistletoe ratings

description: Data collected in the field from November 2008 (t1) to May 2011 (t6) for dwarf mistletoe interaction modelling. Tree refers to the host tree, dbh to diameter to breast height, MDMR to modified dwarf mistletoe rating, t to time, and t+1 to time +1.
DOI: 10.5061/dryad.tm5sv/2
title: Polar coordinates and distances between trees

description: Data of the polar coordinates of the host trees (x,y), where tree no. 3 is the center. Distances between all trees are computed.
DOI: 10.5061/dryad.vk3fg/1
title: S1 - SBFSEM Protocol

description: Step-by-step Protocol for using serial block-face scanning electron microscopy (SBFSEM). The precise concentrations and compositions of each chemical used can be found within the ‘Material & Methods’ section of "3D-Reconstruction on cell level – case study elucidates the three dimensional ultrastructure of the spinning apparatus of Embioptera (Insecta)" Büsse et al.
DOI: 10.15468/dl.2sd7qv
title: Occurrence Download

description: A dataset containing 1244247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fagus L."
 ]
}

 The dataset includes 1244247 records from 2513 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086963-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.7108098
title: The Svalbox Digital Model Database (DMDb)

description: <strong>The Svalbox Digital Model Database</strong><br> The Svalbox Digital Model Database (DMDb) is a regional DOM database geographically constrained to the Norwegian High Arctic Archipelago of Svalbard at 74-81 °N and 10-35 °E. Svalbard offers exceptional quality, vegetation-free outcrops with a wide range of lithologies and tectono-magmatic styles including extension, compression and magmatism. Data and metadata of the systematically digitized outcrops across Svalbard are shared according to FAIR principles through the Svalbox DMDb. Fully open-access and downloadable DOMs include not just the DOM itself but also the input data, processing reports and projects, and other data products such as footprints and orthomosaics. Rich metadata for each DOM comprises both the technical and geological parameters (metadata), enabling visualisation and integration with regional geoscientific data on the Svalbox portal.<br> <br> <strong>Release information</strong><br> The v2023.3 release of the Svalbox DMDb, documented in this contribution, covers 135 DOMs cumulatively covering 113.946 km2 and offering Proterozoic to Cenozoic stratigraphy.<br> <br> <strong>Release documentation</strong><br> The Svalbox DMDb v2023.3 is shared in the following formats: GeoJSON (.geojson) Geopackage (.gpkg) Documentation of the types and units associated with the data columns is documented through the SvalboxDMDb parameters files, available in: Comma-separated values (.csv) JSON (.json) Updated metadata is continuously updated to the Svalbox server and made available through: https://www.svalbox.no/map/ Svalbox ArcGIS REST access point (https://svalbox.unis.no/arcgis/rest/services/) <strong>Citation</strong><br> In addition to model-specific DOIs, please cite the following papers when using the Svalbox DMDb and its models: Betlem, et al. "The Svalbox Digital Model Database: a geoscientific window to the High Arctic." Geosphere (in review). Senger, et al. "Using digital outcrops to make the high Arctic more accessible through the Svalbox database." Journal of Geoscience Education 69.2 (2021): 123-137.
DOI: 10.6084/m9.figshare.22331575
title: Minimal dataset of Innominate translocation

description: Excel file of Minimal dataset of "Innominate translocation for acute type A dissection" study
DOI: 10.6084/m9.figshare.22331575.v1
title: Minimal dataset of Innominate translocation

description: Excel file of Minimal dataset of "Innominate translocation for acute type A dissection" study
DOI: 10.34740/kaggle/dsv/5226398
title: price_limits
DOI: 10.6084/m9.figshare.22331485
title: Data from: Penk et al (2019) Applied Vegetation Science

description: Data from: Penk MR, Perrin PM, Kelly R, O’Neill F & Waldren S (2020) Plant diversity and community composition in temperate north-east Atlantic salt marshes are linked to nutrient concentrations. <em>Applied Vegetation Science</em>, 23: 3–13. https://doi.org/10.1111/avsc.12459. <br> Plant community composition surface soil characteristics (upper 10cm) data from 246 samples collected across 15 saltmarshes in Ireland.
DOI: 10.18712/nsd-nsd1208-v1
title: Kindergarten survey in Kristiansand, 1999

description: The purpose of the project was to map applications to kindergartens in Kristiansand municipality. The survey is a direct follow-up to a similar survey in 1997. It has been carried out in collaboration with the client, Kristiansand municipality and Agderforskning. The task has mainly been to help with the formulation/design of the questionnaire, data processing, analysis and result reporting.
DOI: 10.5281/zenodo.7766369
title: Dataset : Global mangrove root production and its controls

description: This Dataset include root production reported in individual mangrove root production studies published until the 23 March 2022. Alongside of this data, it reports associated environmental data and metadata. For full methodology report to the methodology section of the article: "Global mangrove root production, its controls and roles in the blue carbon budget of mangroves" by Arnaud et al. 2023 (Global Change Biology).
DOI: 10.5281/zenodo.7766183
title: Surface wave observations in 90% Umf fluidised granular current

description: High speed video frames taken at 500 fps, looking down at the upper surface of a granular flow being supplied with 90% of the minimum fluidisation velocity. Shows development and evolution of surface waves as the current propagates and comes to a halt. Flume base is 15 cm wide. Current is comprised of 45-90 micron soda lime ballotini.
DOI: 10.5281/zenodo.7766549
title: Dataset for manuscript "Host-related and environmental factors influence long-term ectoparasite infestation dynamics of mouse lemurs in northwestern Madagascar" to be published in the American Journal of Primatology

description: This Excel-file contains three datasets, corresponding to the initial raw dataset resulting from all ectoparasite inspections (n = 2,241), the merged dataset used for host-related and temporal modeling (n = 1940), and the even more condensed dataset with one datapoint per individual used for climatic modeling (n = 583), respectively.
description: This dataset has been used to generate a publication on "Host-related and environmental factors influence long-term ectoparasite infestation dynamics of mouse lemurs in northwestern Madagascar" to be published in the American Journal of Primatology. The study received funding from the Primate Conservation Inc. (research grant PCI# 1299 to A.K.), the German Academic Exchange Service (DAAD, travel grant no. 57212311 to A.K.), the Gesellschaft für Primatologie (GfP, Christian-Vogel Fond to A.K.), the Erasmus+ Programme of the European Union (2020/21) to C.M.G. Funding for the 2010-2011 was provided by an NSF Dissertation Improvement Grant (#0961779), a PEO Scholar Award, the Animal Behaviour Society, Lewis and Clark Fund of the American Philosophical Society, German Academic Exchange Service (#A/09/81743), American Society of Primatologists, Sigma Xi (National Chapter, grant #G2009101504), Sigma Xi (Arizona State University chapter), Arizona State University Graduate and Professional Student Association, Arizona State University School of Human Evolution and Social Change, and an Arizona State University Graduate College Dissertation Writing Fellowship to S.E.K.
DOI: 10.5281/zenodo.7766548
title: Dataset for manuscript "Host-related and environmental factors influence long-term ectoparasite infestation dynamics of mouse lemurs in northwestern Madagascar" to be published in the American Journal of Primatology

description: This Excel-file contains three datasets, corresponding to the initial raw dataset resulting from all ectoparasite inspections (n = 2,241), the merged dataset used for host-related and temporal modeling (n = 1940), and the even more condensed dataset with one datapoint per individual used for climatic modeling (n = 583), respectively.
description: This dataset has been used to generate a publication on "Host-related and environmental factors influence long-term ectoparasite infestation dynamics of mouse lemurs in northwestern Madagascar" to be published in the American Journal of Primatology. The study received funding from the Primate Conservation Inc. (research grant PCI# 1299 to A.K.), the German Academic Exchange Service (DAAD, travel grant no. 57212311 to A.K.), the Gesellschaft für Primatologie (GfP, Christian-Vogel Fond to A.K.), the Erasmus+ Programme of the European Union (2020/21) to C.M.G. Funding for the 2010-2011 was provided by an NSF Dissertation Improvement Grant (#0961779), a PEO Scholar Award, the Animal Behaviour Society, Lewis and Clark Fund of the American Philosophical Society, German Academic Exchange Service (#A/09/81743), American Society of Primatologists, Sigma Xi (National Chapter, grant #G2009101504), Sigma Xi (Arizona State University chapter), Arizona State University Graduate and Professional Student Association, Arizona State University School of Human Evolution and Social Change, and an Arizona State University Graduate College Dissertation Writing Fellowship to S.E.K.
DOI: 10.6084/m9.figshare.21840501
title: Supplementary Material for: A tunable calcium phosphate coating to drive in vivo osseointegration of composite engineered tissues

description: Varying degrees of hydroxyapatite (HA) surface functionalization have been implicated as the primary driver of differential osteogenesis observed in infiltrating cells. The ability to reliably create spatially-controlled areas of mineralization in composite engineered tissues is of growing interest in the field, and the use of HA-functionalized biomaterials may provide a robust solution to this challenge. In this study, we successfully fabricated polycaprolactone (PCL) salt-leached scaffolds with two levels of a biomimetic calcium phosphate coating to examine their effects on MSC osteogenesis. Longer duration coating in simulated body fluid (SBF) led to increased HA crystal nucleation within scaffold interiors as well as more robust HA crystal formation on scaffold surfaces. Ultimately, the increased surface stiffness of scaffolds coated in SBF for 7 days in comparison to scaffolds coated in SBF for 1 day led to more robust osteogenesis of MSCs in vitro without the assistance of osteogenic signaling molecules. This study also demonstrated that the use of SBF-based HA coatings can promote higher levels of osteogenesis in vivo. Finally, when incorporated as the endplate region of a larger tissue-engineered intervertebral disc replacement, HA-coating did not induce mineralization in or promote cell migration out of neighboring biomaterials. Overall, these results verified tunable biomimetic HA coatings as a promising biomaterial modification to promote discrete regions of mineralization within composite engineered tissues.