cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.57745/ah9uwc
title: Replication data for the article: "Deciphering autism heterogeneity: a molecular stratification approach in four mouse models" (Gora et al.)

description: This dataset includes all data and R code to reproduce the analyses and graphics presented in the article "Deciphering autism heterogeneity: a molecular stratification approach in four mouse models". GORA C., DUDAS A., VAUGRENTE O., DROBECQ L., PECNARD E., LEFORT G. and PELLISSIER L. P. Data are available either as separate csv files.
DOI: 10.57745/9qfgxt
title: MassiveFold data for target T1212

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/)
DOI: 10.57745/afurvw
title: Substitution of polysorbates by plant-based emulsifiers: impact on vitamin D bioavailability and gut health

description: This dataset contains the data used in the article "Substitution of polysorbates by plant-based emulsifiers: impact on vitamin D bioavailability and gut health"
DOI: 10.57745/ajnxen
title: CLIMATIK : système d'information pour les données du réseau agroclimatique INRAE

description: CLIMATIK est une application web pour la mise à disposition des données du réseau INRAE de stations agroclimatiques d’INRAE (50 sites dans l’hexagone et 4 sites dans les DOM-TOM). Les stations fournissent des données agroclimatiques nécessaires à des infrastructures de recherches de terrain (SOERE, essai système de culture, plateforme de phénotypage, etc.). Les données sont visualisables dans des météogrammes et accessibles par des requêtes dans l'interface ou par web service. Ce service est à disposition des agents INRAE et partenaires après identification. Cette application est portée par l’unité de service AgroClim.
DOI: 10.57745/avlwjv
title: Interactive dashboard (R Shiny) and simulated dataset of "Impact of intraspecific genetic variation on interspecific competition: a theoretical case study of forage binary mixtures"

description: Simulated dataset and R Shiny dashborad for visualising data from the article "Impact of intraspecific genetic variation on interspecific competition: a theoretical case study of forage binary mixtures". The dashboard can can be used to explore simulation scenarios for various model outputs.
DOI: 10.57745/6lg9as
title: OpenFOAM data for a circular cylinder wake flow (Re=3900)

description: The current dataset contains numerical results from openfoam simulation of a cylinder wake at reynolds number Re=3900. The geometry has been constructed using blockMesh followed by snappyHexMesh tools : the 3D domain is a [0:20]x[-10:10]x[0:3.14] box crossed by a Z axis cylinder centered at Ccyl=(5,0) with a radius Rcyl=0.5. As for the simulation, the pimpleFoam solver of openfoam 21.12 has been used, followed with parafoam for post treatment visualization, and ITHACA-FV for POD The code has been run on a cluster with almost 28 CPUs with commands like : RUNNING (LES) decomposePar -decomposeParDict system/decomposeParDict -force mpirun -n 28 pimpleFoam -parallel mpirun -n 28 redistributePar -parallel -reconstruct -overwrite POST treatment In current directory, Iso Q generation for visualization : postProcess -func Q -time "500:600" In POD-* directory, POD using ITHACA-FV library and ANR code RedLUM. POD is performed on 500:1000 (train set) using the snapshot method. Temporal modes are also evaluated on 1000:1100 (test set) by snapshot projection.
DOI: 10.57745/9rwlkz
title: Data and statistics of direct numerical simulations of two converging-diverging channel flows

description: The dataset includes the raw data and several statistics of two Direct Numerical Simulation (DNS) of converging diverging channel flow (channel flow with a smooth bump profile on the lower wall). The two cases have been designed using the same geometry than the one used in several experiments in the LMFL’s wind tunnel for the analysis of wall turbulence with pressure gradient and for flow control. The current database was generated in order to provide data to test and validate turbulence models. In addition to classical turbulence statistics, all the terms of the Reynolds Stress budget equation are available in the bump local coordinate system.
DOI: 10.57745/apheoj
title: Références techniques pour la modélisation des flux d'azote en système de polyculture-élevage en agriculture biologique

description: La modélisation des flux d'azote à l'échelle des exploitations de polyculture-élevage en agriculture biologique nécessite des références techniques sur les systèmes de production végétale et animale. Ce jeu de données synthétise les références nécessaires pour ces calculs. Ces références sont issues de différentes sources bibliographiques. Pour la production végétale, il s'agit du taux de légumineuses, du taux de fixation symbiotique, du rendement et du contenu en azote des récoltes pour les différentes catégories de culture. Pour la production animale, il s'agit des quantités d'azote excrétés, du temps passé à l'extérieur des bâtiments et de l'efficience de conversion de l'azote pour les différentes catégories animales, d'une part. D'autre part, il s'agit des facteurs d'émission liés aux effluents d'élevage des différentes catégories animales.
DOI: 10.57745/az6wmp
title: NOMAD-Outcome_GA101024283_Entretiens_Montreal

description: Entretiens réalisés à Montréal dans le cadre du projet européen NOMAD-Outcome, "Explaining the Outcomes of Neighbourhood Mobilzations Against Displacement". (Marie Sklodowska Curie Action, GA 101024283). Ces entretiens ont été réalisés entre l'automne 2022 et le printemps 2023, avec des activistes, des élu.es et des employé.es municipaux de deux arrondissements montréalais (Parc-Extension et Plateau-Mont-Royal).
DOI: 10.57745/bywea3
title: Long-term monitoring of near-surface soil temperature in high-elevation alpine grasslands

description: Monitoring of near-surface soil temperature in European mountain meadows. Data are collected as part of the ANR project ODYSSEE (Projet-ANR-13-ISV7-0004). Data include a GPS position, a date and time in UTC and a near-surface soil temperature (in °C) measured at 5 cm belowground using stand-alone temperature data logger.
DOI: 10.57745/7ngnou
title: MYMYX Mimick Mycorrhizal Networks

description: MYMYX est un jeu sérieux qui permet d’accompagner la transition agroécologique par le partage de connaissances autour d’un processus clef de la biodiversité du sol, les réseaux mycorhiziens. Composé d'un livret pédagogique, de cartes, et de 3 plateaux de jeu, MYMYX favorise le développement d’un raisonnement agroécologique, de la compréhension des processus à la conception de systèmes agroécologiques.
DOI: 10.57745/9nckg6
title: MassiveFold data for target H1204 - T240

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/9qosdy
title: Malabar project: samples versus otus contingency tables

description: Malabar project: samples versus otus contingency tables For a short presentation of Malabar project, click here . This dataset makes available a couple of contingency tables with samples as rows and OTUs as columns, or vice-versa, as datasets for further studies in statistical ecology. Main environmental factors are four seasons: summer, autumn, winter, spring four locations: Bouée 13, Comprian, Jaquets, Teychan high tide and low tide pelagos or benthos How the tables have been built We have the fasta files per sample, for two markes: rbcL, 18S-v4. The following steps have been done: All the reads from all samples have been mixed together like in a big bag, one for rbcL, one for 18S-v4, keeping track (through their name) of the sample they come from. For each marker, OTUs have been built (one set of oTUs per "bag") with SWARM, V2. We have a bag of 14,635,946 reads for rbcL, and of 11,826,308 reads for 18S-v4. (such a huge number of reads could be handled with SWARM in a reasonable time). As we know from which sample each read comes, it has been possible to build a contingency table with, say, $n(i,j)$ being the number of reads belonging to OTU $i$ in environmental conditions $j$.
DOI: 10.57745/9rp7mu
title: Flow intermittence indicators from the reconstruction simulations (1960-2021) in the Genal DRN (Spain)

description: Statistical monthly and yearly flow intermittence indicators calculated from the simulated daily state of flow in the Genal DRN (Spain). Indicators for the reconstruction period (1960-2021).
DOI: 10.57745/ajqckl
title: Projet SOCLE (2014-2017)

description: Le projet SOCLE (2014-2017) a eu pour objectif de pallier le manque de méthodes harmonisées et valorisées pour prendre en compte le carbone du sol et les impacts de l’usage et du changement d’usage. Ceci afin de permettre une intégration opérationnelle et une caractérisation des impacts dans les ACV agricoles. L'idée était de faire coïncider les informations issues des différentes approches et méthodes afin d’intégrer le carbone du sol et l’influence des usages et changements d’usages des sols dans l’ACV des produits agricoles.
DOI: 10.57745/aksr1a
title: Biogeographical patterns of the soil fungal:bacterial ratio across France

description: Data to perform the analyzes presented in the publication. See abstract below: Soils are one of the major reservoirs of biological diversity on our planet because they host a huge richness of microorganisms. The fungal:bacterial (F:B) ratio targets two major functional groups of organisms in soils and can improve our understanding of their importance and efficiency for soil functioning. To better decipher the variability of this ratio and rank the environmental parameters involved, we used the French Soil Quality Monitoring Network – one of the most extensive and a priori-free soil sampling surveys, based on a systematic 16 km x 16 km grid and including more than 2,100 samples. F:B ratios, measured by quantitative PCR targeting the 18S and 16S rDNA genes, turned out to be heterogenously distributed, and spatially structured in geographical patterns across France. These distribution patterns differed from bacterial or fungal densities taken separately, supporting the hypothesis that the F:B ratio is not the mere addition of each density, but rather results from the complex interactions of the two functional groups. The F:B ratios were mainly influenced by soil characteristics and land management. Among soil characteristics, the pH and to a lesser extent the organic carbon content and the C:N ratio were the main drivers. These results improved our understanding of soil microbial communities, and from an operational point of view, they suggested that the F:B ratio should be a useful new bioindicator of soil status. The resulting dataset can be considered as a first step toward building up a robust repository essential to any bioindicator and aimed at guiding and helping decision-making.
DOI: 10.57745/6vq2bp
title: LOIEAU Système d'information de données hydrologiques modélisées en contexte d'étiage à l'échelle des bassins versants de la France métropolitaine

description: L'interface Web LoiEau (https://loieau.recover.inrae.fr/) est une application pour la mise à disposition des données hydrologiques modélisées en contexte d'étiage issues de la méthode LoiEau (modèle hydrologique régional) appliquée à l'échelle des bassins versants sur le territoire français.  La méthode régionale a été appliquée sur 125 000 bassins versants topographiques ayant une superficie de 5 à 10 000 km². Les chroniques hydrologiques de débits journaliers modélises de 1970 à 2020 au pas de temps journalier à l'exutoire de chaque bassin permettent de calculer des indicateurs statistiques sur la ressource en eau ( bilan, saisonnalité, étiage). Ces indicateurs sont associés à des incertitudes traduites en intervalles de confiance. Des codes de confiance ont été proposés pour qualifier le degré d’applicabilité des résultats de la méthode et servent à signaler les zones particulières pour lesquelles les débits simulés par LoiEau ont tout de même été calculés, mais sur lesquelles les hypothèses associées à la méthode peuvent être remises en cause. La modélisation hydrologique utilise les données météorologiques de la réanalyse SAFRAN de Météo-France agrégées sur chaque bassin versant. Le calage de la méthode porte sur  800 bassins versants, les chroniques observées de débits journaliers sont extraites de la base nationale hydrométrique (Banque Hydro). Ce service est à disposition des agents INRAE et autres partenaires publics ou privés après identification. Un fichier est disponible en téléchargement. Il contient les estimations des valeurs  QA (module) et QMNA5 estimés sur les exutoires des bassins versants de la BNBV par la méthode LOIEAU. Un avertissement sur les données téléchargées est à lire avant toute utilisation.
DOI: 10.57745/bciszo
title: Downscaled climate projections (1971-2100) for the Guadiaro-Genal river basin (Spain)

description: Downscaled projections of temperature, precipitation, and reference evapotranspiration for the Guadiaro river basin (which includes the Genal DRN). 3 SSP scenarios and 5 climate models.
DOI: 10.57745/aaaruz
title: Mechanistic study of the differences in lactic acid bacteria resistance to freeze- or spray-drying and storage

description: This data set concerns the physico-chemical, biological and biochemical characterization of two lactic acid bacteria. The objective was to assess their different resistance to drying and describe the degradation mechanisms related to freeze- and spray-drying. Lactobacillus delbrueckii ssp bulgaricus CFL1 and Lactiplantibacillus plantarum WCFS1 were investigated. The dataset contains, for each strain, the results for the following studies: i) biological activity: culturability and acidifying activity; ii) flow cytometry: viable, dead and injured cells; iii) physico-chemical properties: water activity and glass transition temperature of dried samples; and iv) biochemical characterization by Fourier transform infrared microscopy of cells in an aqueous environment. These measurements were performed after freezing, after freeze- and spray-drying, and after 28 days of storage at 4, 23 and 37 °C. The glass transition temperature of the frozen samples was also measured.
DOI: 10.57745/ahf797
title: MassiveFold data for target T1206 - T242

description: MassiveFold data generated for CASP16, in collaboration with CAPRI . 8040 predictions were generated for the target = 1005 x 8 sets of parameters. - a description of the setup can be found in `MassiveFold_CASP16_Abstract.pdf` - `README.txt` describes the contents of the main `MassiveFold.tar.gz` file - the main `MassiveFold.tar.gz file contains all the predictions, divided into 8 folders named after the conditions. It contains predictions as well as pickle files, sequence alignments, rankings and plots. The README.txt file describes the contents of this tar.gz. - the `only_pdbs_MassiveFold.tar.gz` is the result of the `gather_runs.py` script, without the pickle files. It contains a list of all the pdb files and ranking files with scores. - `gather_runs.py` allows to gather the runs, to use preferentially to the one included in the main `MassiveFold.tar.gz` at the time of the prediction phase, because it has been updated - `combined_scores.csv` file contains the CASP assessment for the target (from https://predictioncenter.org/) - `CAPRI_assessment.csv` file contains the CAPRI assessment for the target (from https://www.capri-docking.org/assessment/) - `CAPRI_scoring.pdb.gz` is a multi-pdbs containing all the MassiveFold predictions for the target. It was used for the CAPRI scoring phase.
DOI: 10.57745/b35xcs
title: Template to share sensory evaluation data

description: This template can be used to share sensory evaluation data and appropriate metadata according to FAIR principles.
DOI: 10.57745/ben34j
title: Data "GEF14 acts as a specific activator of the plant osmotic signaling pathway by controlling ROP6 nanodomain formation"

description: Data associated with "GEF14 acts as a specific activator of the plant osmotic signaling pathway by controlling ROP6 nanodomain formation". The data folder contains the full resolution images and numbers used to generate the graphs.
DOI: 10.57745/bfhgo3
title: Dataset of a laboratory experiment on the effect of the storage capacity of a city block on unsteady urban floodwaters

description: This dataset is composed of experimental measurements collected on a laboratory facility, a 5.4 m long and 3.2 m wide tilted platform. The latter represents an urban area, consisting of a porous rectangular city block (one opening on each sidewall) and four surrounding streets. The experiments were performed under unsteady flow conditions, using three different inflow hydrographs (denoted as H.LSS, H.LLL and H.SLS), all with the same peak discharge (Qpk ≈ 5 l/s). Additional experiments were carried out under steady flow conditions, for an inflow discharge of 5 l/s. Measurements were conducted by varying the storage capacity of the city block (φ = 0, 0.5, 0.75, 0.9 and 1). We present here the following measurements: (1) one inflow discharge and four outflow discharges; (2) flow depths in the inlet street, four outlet streets, and four streets surrounding the block, as well as flow depths within the city block (11 locations); (3) velocities in the right-hand and left-hand streets (2 locations), only for the inflow hydrograph H.LSS and steady flow.
DOI: 10.57745/bgae4l
title: Replication data for : High-Fidelity Simulation of Turbulent Mixed Convection in Pipe Flow (Re=5300, Pr=0.71, Ri = 0.964)

description: The present dataset contains time and space averaged profiles for various turbulent quantities in case of forced and mixed convection in a turbulent pipe flow. The dimensionless numbers for the cases are Re=5300, Pr=0.71 and various Ri (0, 0.252, 0.348, 0.964). For a full description of the configuration, please check the corresponding paper : High-Fidelity Simulation of Turbulent Mixed Convection in Pipe Flow by Rodrigo Vicente Cruz, Cédric Flageul, Eric Lamballais, Vladimir Duffal, Erwan Le Coupanec and Sofiane Benhamadouche (submitted to International Journal of Heat and Fluid Flow). Direct Numerical Simulations are performed to provide a fine description of the turbulent mixed convection flow in an upward heated pipe. The introduction of buoyancy forces in this type of flow gives rise to different non-trivial phenomena such as laminarisation and a bi-stable behaviour, capable of modifying the flow characteristics in a deep and non-monotonic way. The present work aims therefore to establish a high-fidelity and publicly accessible database, containing first and second-order accurate turbulence statistics, as well as budgets of various one-point correlations of turbulent quantities, namely the turbulent kinetic energy and its associated dissipation rate, the temperature variance and its associated dissipation rate, the Reynolds stress tensor and the turbulent heat flux vector. Besides, the coexistence of two and very distinct statistically stationary solutions for a same set of flow parameters is also investigated. These two states are referred to as weak- and strong-turbulence regimes. The budget analyses performed here, such as the original ones presented for the budgets of the Reynolds stresses, contribute to gaining further understanding of the physics of mixed convection flows. The results issued from the present study shall also support the validation of lower-fidelity numerical models, such as Large Eddy Simulation, RANS and hybrid RANS/LES approaches.
DOI: 10.57745/6vyuqn
title: Dataset of near-infrared spectroscopy measurements of rapeseed ground organs to predict nitrogen and carbon content

description: A total of 2427 samples consisted of various tissues (roots, leaves, stems, flowers and pods) were collected at different developmental stages on 62 genotypes of winter oilseed rape grown under a wide range of environments including three crop seasons (2014–2015, 2015–2016 and 2016–2017), two growth conditions (tunnel or field) and several crop management strategies (limiting (N-) vs. optimal (N+) N fertilization or water supply (W- vs. W+). Elementary analysis allowed to determine carbon (C) and nitrogen (N) content. In parallel, near infrared spectra were measured from 4000 to 12000 cm-1 on MPA (Bruker) FT-NIR spectrometer.
DOI: 10.57745/agg7l8
title: Images sequences to determine the covering power of different rapeseed genotypes

description: This repository contains data (RGB images), ROI images (Region Of Interest) and binary images (mask of plants) and four ImageJ macro for calculating soil cover percentage