cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25345/c52k34
title: MassIVE MSV000088598 - GLEAMS clustering dark proteome
title: GLEAMS is a deep neural network to embed spectra into a low-dimensional space in which spectra generated by the same peptide are close to one another. We have used GLEAMS as the basis for a large-scale spectrum clustering, detecting groups of unidentified, proximal spectra representing the same peptide. GLEAMS was used to embed 669 million spectra from the MassIVE-KB dataset, after which hierarchical clustering with average linkage was used to cluster the embeddings. Medoid spectra were extracted from clusters consisting of only unidentified spectra, resulting in 45 million medoid spectra representing 257 million clustered spectra. The medoid spectra were split into two groups based on cluster size (size two and size greater than two) and exported to two MGF files. ANN-SoLo was used for open modification searching, identifying 5.3 million peptide-spectrum matches. We here present the originally unidentified cluster medoid spectra and the ANN-SoLo identification results as a community resource. This is a valuable dataset to further explore the dark proteome, by investigating spectra that are observed repeatedly across many experiments but consistently remain unidentified.
DOI: 10.6084/m9.figshare.14355454.v1
title: Additional file 2 of A novel tp53-associated nomogram to predict the overall survival in patients with pancreatic cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.14355538.v1
title: Additional file 11 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 11: Supplementary Tables S9. Results of the univariate Cox regression analysis.
DOI: 10.6084/m9.figshare.14355541.v1
title: Additional file 12 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 12: Supplementary Tables S10. Results of the multivariate Cox regression analysis.
DOI: 10.6084/m9.figshare.14355547
title: Additional file 14 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 14: Supplementary Tables S12. CIBERSORT results for the TCGA-HCC dataset.
DOI: 10.6084/m9.figshare.14355547.v1
title: Additional file 14 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 14: Supplementary Tables S12. CIBERSORT results for the TCGA-HCC dataset.
DOI: 10.6084/m9.figshare.14355580.v1
title: Additional file 7 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 7: Supplementary Tables S5. Results of the GO analysis.
DOI: 10.6084/m9.figshare.14355583.v1
title: Additional file 8 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 8: Supplementary Tables S6. Results of the KEGG analysis.
DOI: 10.6084/m9.figshare.14355556.v1
title: Additional file 17 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 17: Supplementary Tables S15. Results for the Pearson analysis of biomarkers.
DOI: 10.6084/m9.figshare.14355580
title: Additional file 7 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 7: Supplementary Tables S5. Results of the GO analysis.
DOI: 10.5281/zenodo.10654049
title: Calibration Data for "Salix" instrument in Lee Lab, Cambridge; Prime95B sCMOS camera
DOI: 10.5281/zenodo.10654050
title: Calibration Data for "Salix" instrument in Lee Lab, Cambridge; Prime95B sCMOS camera
DOI: 10.6084/m9.figshare.14355454
title: Additional file 2 of A novel tp53-associated nomogram to predict the overall survival in patients with pancreatic cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.14355535.v1
title: Additional file 10 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 10: Supplementary Tables S8. Enrichment results for the 144 immune-related hub genes.
DOI: 10.6084/m9.figshare.14355556
title: Additional file 17 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 17: Supplementary Tables S15. Results for the Pearson analysis of biomarkers.
DOI: 10.6084/m9.figshare.14355553
title: Additional file 16 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 16: Supplementary Tables S14. TMB data for the TCGA-HCC cohort.
DOI: 10.6084/m9.figshare.7015595
title: MOESM8 of The genome-wide transcriptional regulatory landscape of ecdysone in the silkworm

description: Additional file 8. The list of EcR peaks containing EcRE motif.
DOI: 10.6084/m9.figshare.14355559
title: Additional file 18 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 18: Supplementary Tables S16. TIDE results for GSE14520.
DOI: 10.6084/m9.figshare.14355586.v1
title: Additional file 9 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 9: Supplementary Tables S7. Immune-related hub genes related to OS.
DOI: 10.6084/m9.figshare.14355574
title: Additional file 5 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 5: Supplementary Tables S3. Results of the differential expression analysis..
DOI: 10.6084/m9.figshare.14355571
title: Additional file 4 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 4: Supplementary Table S2. Genes downloaded from ImmPort.
DOI: 10.6084/m9.figshare.14355574.v1
title: Additional file 5 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 5: Supplementary Tables S3. Results of the differential expression analysis..
DOI: 10.6084/m9.figshare.14355550.v1
title: Additional file 15 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 15: Supplementary Tables S13. Biomarkers in the TCGA-HCC dataset.
DOI: 10.6084/m9.figshare.14355568
title: Additional file 3 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 3: Supplementary Table S1. Genes downloaded from InnateDB.
DOI: 10.6084/m9.figshare.14355577.v1
title: Additional file 6 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 6: Supplementary Tables S4. Immune-related differentially expressed genes (DEGs).
DOI: 10.6084/m9.figshare.14355760
title: Additional file 5 of Loss of splicing factor IK impairs normal skeletal muscle development

description: Additional file 5: Table S1. The raw data of RNA-seq for skeletal muscle differentiation genes listed in Fig. 2c.
DOI: 10.6084/m9.figshare.14355553.v1
title: Additional file 16 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 16: Supplementary Tables S14. TMB data for the TCGA-HCC cohort.
DOI: 10.6084/m9.figshare.14355583
title: Additional file 8 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 8: Supplementary Tables S6. Results of the KEGG analysis.
DOI: 10.6084/m9.figshare.22220182.v2
title: Late Eocene slab retreat, extension, and mantle upwelling inferred from mantle signatures in potassium-rich magmatism in NE Iran

description: There is considerable debate regarding the petrogenesis of K-rich magma, which are believed to occur in subduction settings. The districts of the potassic rocks in the rear-arc of the Cenozoic Iran have not been thoroughly investigated. In this study, we investigate Late Eocene K-rich rocks of the Roshtkhar area of NE Iran. We employ whole-rock geochemistry, Sr-Nd-Hf-isotopes and zircon U-Pb age data of intrusive rocks to identify the mantle signature, evaluate the timing of emplacement, and determine the geodynamic setting. The Roshtkhar intrusive rocks (RIR) encompass a narrow compositional spectrum from syenite to monzonite, belonging to K-rich series, and are enriched in light rare earth elements and large ion lithophile elements such as Cs, Rb, Ba, Th, and U, with positive K, Pb, and Sr anomalies. U-Pb LA-ICP-MS dating of zircon from two samples yielded ages of ca. 38 Ma. Epsilon Hf values for investigated Eocene zircons display a variable range from +0.3 to +6.5. The RIR show relatively homogeneous initial epsilon Nd values ranging from +0.64 to −1.31 and modest variation in initial <sup>87</sup>Sr/<sup>86</sup>Sr from 0.7048 to 0.7052. The data show mantle contribution with small involvement of Cadomian upper crustal material of up to 12% and an approximately 3% contribution fluid derived from subducted sediment into the mantle source. The lack of rocks that are purely derived from the lower crust in the study area further argues against the partial melting of lower crust that delaminated into the mantle. We suggest slab retreat, extension, and mantle upwelling as the main mechanisms for the generation of the primitive melts of RIR. Accordingly, decompression melting of metasomatized lithospheric mantle (e.g. phlogopite, apatite, and/or pargasite-bearing lherzolite) would be a plausible mechanism for the forming of K-rich basic melt in the mantle source.
DOI: 10.6084/m9.figshare.14355568.v1
title: Additional file 3 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 3: Supplementary Table S1. Genes downloaded from InnateDB.
DOI: 10.6084/m9.figshare.21171490
title: Additional file 2 of A robust and transformation-free joint model with matching and regularization for metagenomic trajectory and disease onset

description: Additional file 2: Supplementary Table S1. The list of OTUs detected by JMR, JMR-NC, LMM-N, individually, as shown in Figure 7.
DOI: 10.6084/m9.figshare.14355571.v1
title: Additional file 4 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 4: Supplementary Table S2. Genes downloaded from ImmPort.
DOI: 10.6084/m9.figshare.14355760.v2
title: Additional file 5 of Loss of splicing factor IK impairs normal skeletal muscle development

description: Additional file 5: Table S1. The raw data of RNA-seq for skeletal muscle differentiation genes listed in Fig. 2c.
DOI: 10.6084/m9.figshare.14355577
title: Additional file 6 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 6: Supplementary Tables S4. Immune-related differentially expressed genes (DEGs).
DOI: 10.6084/m9.figshare.19211588.v1
title: Additional file 1 of Genome-wide investigation of the ZF-HD gene family in two varieties of alfalfa (Medicago sativa L.) and its expression pattern under alkaline stress

description: Additional file 1: Supplementary Table 1. One-to-one orthologous relationships between Medicago sativa L. and other three plant species. Supplementary Table 2. The FPKM value of MsZF-HD genes under different abiotic treatment.
DOI: 10.6084/m9.figshare.12782720
title: Additional file 5 of Comparative transcriptome analyses define genes and gene modules differing between two Populus genotypes with contrasting stem growth rates

description: Additional file 5: Data S3. Gene Ontology annotation and enrichment analysis of differential expressed genes between two neighbouring growth stages for Neva and I-214.
DOI: 10.6084/m9.figshare.21268509
title: Visual Perceptual Learning of Feature Conjunctions Leverages Non-linear Mixed Selectivity

description: Behavioral data for Karami & Schwiedrzik - Visual Perceptual Learning of Feature Conjunctions Leverages Non-linear Mixed Selectivity. See readme file for details. 
<br>
Please contact C. M. Schwiedrzik (c.schwiedrzik@eni-g.de) in case you have any questions.
DOI: 10.6084/m9.figshare.21268509.v1
title: Visual Perceptual Learning of Feature Conjunctions Leverages Non-linear Mixed Selectivity

description: Behavioral data for Karami & Schwiedrzik - Visual Perceptual Learning of Feature Conjunctions Leverages Non-linear Mixed Selectivity. See readme file for details. 
<br>
Please contact C. M. Schwiedrzik (c.schwiedrzik@eni-g.de) in case you have any questions.
DOI: 10.25383/city.25188572
title: E-Delphi Consensus Study Data: Forming agreement on parent-child interaction behaviours and approaches for families with deaf infants aged 0-3

description: Datasets for E-Delphi Consensus Study:Quant data from expert responses for rounds 1 and 2 (note participant country and hearing status has been removed in order for particpant responses to be non-identifiable).Qual data from expert responses for rounds 1 and 2 - Optional text responses to explain participant ratings. Note some contributions were retracted as they idenfitied the individual.
DOI: 10.25383/city.25188572.v1
title: E-Delphi Consensus Study Data: Forming agreement on parent-child interaction behaviours and approaches for families with deaf infants aged 0-3

description: Datasets for E-Delphi Consensus Study:Quant data from expert responses for rounds 1 and 2 (note participant country and hearing status has been removed in order for particpant responses to be non-identifiable).Qual data from expert responses for rounds 1 and 2 - Optional text responses to explain participant ratings. Note some contributions were retracted as they idenfitied the individual.
DOI: 10.6084/m9.figshare.12782720.v1
title: Additional file 5 of Comparative transcriptome analyses define genes and gene modules differing between two Populus genotypes with contrasting stem growth rates

description: Additional file 5: Data S3. Gene Ontology annotation and enrichment analysis of differential expressed genes between two neighbouring growth stages for Neva and I-214.
DOI: 10.24396/ordar-141
title: weather station GISFI Homecourt 2017

description: Weather data of 2017 with absence of measurement : 2017-03-30 12:59; 2017-04-10 14:59; 2017-04-11 09:59; 2017-07-19 from 05:59 to 08:59; from 2017-07-19 21:59 to 2017-07-21 08:59; 2017-11-03 15:59; 2017-12-01 from 09:59 to 11:59
DOI: 10.6084/m9.figshare.14355586
title: Additional file 9 of Comprehensive analysis of immune-related prognostic genes in the tumour microenvironment of hepatocellular carcinoma

description: Additional file 9: Supplementary Tables S7. Immune-related hub genes related to OS.
DOI: 10.5281/zenodo.6954696
title: Thesis Alice Wegener chapter 6 supplementary material

description: Supplementary tables of chapter 6, thesis Alice Wegener
DOI: 10.5281/zenodo.6954695
title: Thesis Alice Wegener chapter 6 supplementary material

description: Supplementary tables of chapter 6, thesis Alice Wegener
DOI: 10.5281/zenodo.6959936
title: Ginkgo biloba zanfona 1

description: .
DOI: 10.5281/zenodo.6959935
title: Ginkgo biloba zanfona 1

description: .
DOI: 10.5519/qd.lx2ukvdf
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14136 records)
DOI: 10.6084/m9.figshare.19739023.v2
title: DATA KEVIN SURVEY 3 AUGUST 2021 (1).sav

description: <br> This data is derived from a cross-sectional survey used to collect primary data from 211 randomly selected cage operators (98) and pond farmers (113) in Kenya's Siaya, Kisumu, and Homabay Counties between December 2020 and April 2021. It includes variables relating to the relationship between TAM constructs, namely Perceived Ease of Use (PEOU), Perceived Usefulness (PU), Attitude towards Use (ATT), and Behavioral Intention (BI) to use Black Soldier Fly Larvae in Aquaculture.
DOI: 10.5281/zenodo.6962560
title: forests-1764430_supplement_1_data_table

description: Supplementary material for the manuscript “δ15N in birch and pine leaves in the vicinity of a large copper smelter indicating a change in the conditions of their soil nutrition” submitted for consideration “Forests”.
DOI: 10.5281/zenodo.6962559
title: forests-1764430_supplement_1_data_table

description: Supplementary material for the manuscript “δ15N in birch and pine leaves in the vicinity of a large copper smelter indicating a change in the conditions of their soil nutrition” submitted for consideration “Forests”.
DOI: 10.6084/m9.figshare.19999991
title: Multi-year emission of carbonaceous aerosols from cooking, fireworks burning, sacrificial incenses, joss paper burning, and barbecue and the key driving forces in China

description: We have shared the dataset of carbonaceous aerosols emission inventory for sources closely related to people's daily life (including cooking, fireworks burning, sacrificial incenses and joss paper burning, and barbecue) in China. The emission inventory has high spatial ( 0.00833°, ~1 km ) and temporal resolutions (1 day for special festivals, and 1 month for the rest). The time span of emission inventory is 2000–2018. The dataset is in tif and excel format, and includes organic carbon (OC, kg), element carbon (EC, kg), black carbon (BC, kg), and brown carbon absorption cross-section emissions (BrC, Mm<sup>2</sup>). The tif data includes yearly carbonaceous aerosols emission spatial distribution. The excel data includes monthly emissions, and daily emissions for special festivals (Chinese New Year’s Eve (CNE), Chinese Spring Festival (CSF), Spring Lantern Festival (LF), Qingming Festival (QF), and Zhongyuan Festival (ZF)).
DOI: 10.6084/m9.figshare.19999991.v1
title: Multi-year emission of carbonaceous aerosols from cooking, fireworks burning, sacrificial incenses, joss paper burning, and barbecue and the key driving forces in China

description: We have shared the dataset of carbonaceous aerosols emission inventory for sources closely related to people's daily life (including cooking, fireworks burning, sacrificial incenses and joss paper burning, and barbecue) in China. The emission inventory has high spatial (1 km × 1 km) and temporal resolutions (1 day for special festivals, and 1 month for the rest). The time span of emission inventory is 2000–2018. The dataset is in tif and excel format, and includes organic carbon (OC, kg), element carbon (EC, kg), black carbon (BC, kg), and brown carbon absorption cross-section emissions (BrC, Mm<sup>2</sup>). The tif data includes yearly carbonaceous aerosols emission spatial distribution. The excel data includes monthly emissions, and daily emissions for special festivals (Chinese New Year’s Eve (CNE), Chinese Spring Festival (CSF), Spring Lantern Festival (LF), Qingming Festival (QF), and Zhongyuan Festival (ZF)).
DOI: 10.6084/m9.figshare.20431368
title: Impact of Lens Material on Objective Refraction in Eyes with Trifocal Diffractive Intraocular Lenses

description: Compare subjective (Rx) and objective (ObjRx) refractions outcomes with two autorefractors models and an aberrometer in eyes implanted with a hydrophobic trifocal IOL (FineVision POD F GF, Physiol, Liége, Belgium) and a hydrophilic one (FineVision POD F, Physiol, Liége, Belgium). Prospective comparative cohort study, with 100 subjects randomly assigned to either the POD F group (n = 50) or the POD F-GF group (n = 50). Postoperative eye examinations at 1-month visit included seven result sets, one for each assessment method: Rx, AR (automated refraction measured with the autorefractor KR8800), WF-P (Zernike-coefficients-based objective refraction, photopic pupil size), WF-M (Zernike-coefficients-based objective refraction, mesopic pupil size), WF-4 (Zernike-coefficients-based objective refraction, 4 mm pupil), OPD-C (automated refraction measured with the aberrometer OPD in the central pupil/photopic conditions), and OPD-M (automated refraction measured with the aberrometer OPD under mesopic conditions). Mean differences between ObjRx and Rx reached statistical significance for sphere and spherical equivalent (M) only with OPD-C in the POD F-GF group. All ObjRx methods showed significant differences with Rx in the POD F group, with some values differing by more than 0.50 D (−0.58 D in M for the WF-P). Bland Altman plots showed better agreement for the astigmatic components, and for sphere and spherical equivalents in both IOL groups measured with AR and OPD-M. None of the objective methods of refraction evaluated in this study were as reliable as the subjective refraction, irrespective of the lens material, but POD F-GF ObjRx seems to differ less with Rx than POD F ObjRx values.
DOI: 10.6084/m9.figshare.20431368.v1
title: Impact of Lens Material on Objective Refraction in Eyes with Trifocal Diffractive Intraocular Lenses

description: Compare subjective (Rx) and objective (ObjRx) refractions outcomes with two autorefractors models and an aberrometer in eyes implanted with a hydrophobic trifocal IOL (FineVision POD F GF, Physiol, Liége, Belgium) and a hydrophilic one (FineVision POD F, Physiol, Liége, Belgium). Prospective comparative cohort study, with 100 subjects randomly assigned to either the POD F group (n = 50) or the POD F-GF group (n = 50). Postoperative eye examinations at 1-month visit included seven result sets, one for each assessment method: Rx, AR (automated refraction measured with the autorefractor KR8800), WF-P (Zernike-coefficients-based objective refraction, photopic pupil size), WF-M (Zernike-coefficients-based objective refraction, mesopic pupil size), WF-4 (Zernike-coefficients-based objective refraction, 4 mm pupil), OPD-C (automated refraction measured with the aberrometer OPD in the central pupil/photopic conditions), and OPD-M (automated refraction measured with the aberrometer OPD under mesopic conditions). Mean differences between ObjRx and Rx reached statistical significance for sphere and spherical equivalent (M) only with OPD-C in the POD F-GF group. All ObjRx methods showed significant differences with Rx in the POD F group, with some values differing by more than 0.50 D (−0.58 D in M for the WF-P). Bland Altman plots showed better agreement for the astigmatic components, and for sphere and spherical equivalents in both IOL groups measured with AR and OPD-M. None of the objective methods of refraction evaluated in this study were as reliable as the subjective refraction, irrespective of the lens material, but POD F-GF ObjRx seems to differ less with Rx than POD F ObjRx values.
DOI: 10.6084/m9.figshare.19739023.v3
title: DATA KEVIN SURVEY 3 AUGUST 2021 (1).sav

description: <br> This data is derived from a cross-sectional survey used to collect primary data from 211 randomly selected cage operators (98) and pond farmers (113) in Kenya's Siaya, Kisumu, and Homabay Counties between December 2020 and April 2021. It includes variables relating to the relationship between TAM constructs, namely Perceived Ease of Use (PEOU), Perceived Usefulness (PU), Attitude towards Use (ATT), and Behavioral Intention (BI) to use Black Soldier Fly Larvae in Aquaculture.
DOI: 10.34740/kaggle/dsv/4028536
title: YouTube Trending Video Dataset (updated daily)