cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17171/1-5-724
title: VA Ass 01614

description: Cylinder Seals
DOI: 10.17171/1-5-725
title: VA Ass 01615

description: Cylinder Seals
DOI: 10.17171/1-5-726
title: VA Ass 01617

description: Cylinder Seals
DOI: 10.17171/1-5-727
title: VA Ass 01621

description: Cylinder Seals
DOI: 10.17171/1-5-728
title: VA Ass 01623

description: Cylinder Seals
DOI: 10.17171/1-5-729
title: VA Ass 01680

description: Cylinder Seals
DOI: 10.17171/1-5-730
title: VA Ass 01677

description: Cylinder Seals
DOI: 10.17171/1-5-731
title: VA Ass 01683

description: Cylinder Seals
DOI: 10.17171/1-5-732
title: VA Ass 01685

description: Cylinder Seals
DOI: 10.17171/1-5-733
title: VA Ass 01686

description: Cylinder Seals
DOI: 10.17171/1-5-734
title: VA Ass 01688

description: Cylinder Seals
DOI: 10.17171/1-5-735
title: VA Ass 01689

description: Cylinder Seals
DOI: 10.17171/1-5-736
title: VA Ass 01690

description: Cylinder Seals
DOI: 10.17171/1-5-737
title: VA Ass 01693

description: Cylinder Seals
DOI: 10.17171/1-5-738
title: VA Ass 01696

description: Cylinder Seals
DOI: 10.17171/1-5-739
title: VA Ass 01702

description: Cylinder Seals
DOI: 10.17171/1-5-740
title: VA Ass 01812

description: Cylinder Seals
DOI: 10.17171/1-5-741
title: VA Ass 02302

description: Cylinder Seals
DOI: 10.17171/1-5-742
title: VA Bab 01539

description: Cylinder Seals
DOI: 10.17171/1-5-743
title: VA Bab 01540

description: Cylinder Seals
DOI: 10.17171/1-5-744
title: VA Bab 01541

description: Cylinder Seals
DOI: 10.17171/1-5-745
title: VA Bab 01542

description: Cylinder Seals
DOI: 10.17171/1-5-746
title: VA Bab 01543

description: Cylinder Seals
DOI: 10.17171/1-5-747
title: VA Bab 01544

description: Cylinder Seals
DOI: 10.17171/1-5-748
title: VA Bab 01545

description: Cylinder Seals
DOI: 10.17171/1-5-749
title: VA Bab 01548

description: Cylinder Seals
DOI: 10.17171/1-5-750
title: VA Bab 01904

description: Cylinder Seals
DOI: 10.17171/1-5-751
title: VA Bab 02255

description: Cylinder Seals
DOI: 10.5281/zenodo.10867170
title: NanoVarBench variant truthset files

description: These tarballs contain the variant truthsets used for each sample in our paper "Benchmarking reveals superiority of deep learning variant callers on bacterial nanopore sequence data".

Each directory contains the following files:



 <sample>.bed - A BED file of all regions in the genome

<sample>.repetitive_regions.bed - A BED file of all repetitive regions of the genome (see the paper for details of how these were identified).

<sample>.unique_regions.bed - Non-repetitive regions of the genome. This is the result of performing bedtools complement -i <repetitive BED> -g <faidx of mutref>

ani.tsv - skani output from skani search for the sample's assembly against all of the downloaded genomes for that species. The last three columns are not from skani. They are completeness_percentile, completeness, and contamination metrics, all obtained from NBCI for each assembly accession.

apply.vcf.gz - the variants that were applied to the sample's reference assembly.

apply.vcf.gz.csi - VCF index for the above VCF

dnadiff.vcf.gz - Variants between the sample and donor genome from mummer4

minimap2.vcf.gz - Variants between the sample and donor genome from minimap2

mutdonor.fna - the FASTA file of the selected variant donor

mutreference.fna - the sample's reference assembly with the apply.vcf.gz applied to it. This is the genome that the sample's read are aligned to for calling variants

mutreference.fna.fai - the faidx of the above genome

reference.fna - the reference assembly of the sample. These are also available on GenBank, but are included here for interoperability

truth.vcf.gz - the truthset of variants. This is essentially apply.vcf.gz with the REF and ALT invert and the POS adjusted for the difference in position between the sample and donor assemblies. (See this script)

vcfstats.txt - VCF statistics produced by paftools.js vcfstat on the truth VCF


For information about each sample, refer to the samplesheet and paper.
DOI: 10.17632/cm97cg87d6.1
title: Nemabiome of ibex and transhumant sheep

description: Wild and domestic ungulates can be infected with the same species of gastrointestinal parasitic nematodes. These parasitic nematodes have a free leaving stage in the environment that contributes to the ease of transmission of gastrointestinal nematodes at the interface of different host species. In addition, gastrointestinal nematodes have developed resistance to anthelmintics which is now considered a major problem for the livestock industry. In a context where wild and domestic ungulates share the same pastures, cross-transmission of resistant gastrointestinal nematodes between species could occur. 
In the Alps, domestic sheep are driven in the mountains each summer in areas where wild ungulates live. In particular, the Alpine ibex, Capra ibex is a protected mountain ungulate that is phylogenetically related to sheep and hosts nematode species common to sheep. In this study we investigated the nemabiome of sheep and ibex in three different areas of the French Alps to evaluate the parasites flow between the two host species. Our investigations are based on the metabarcoding of the ITS2 rDNA nemabiome using next generation sequencing. We also determined the frequency of anthelmintic-resistant nematodes in sheep and ibex to determine if ibex can host resistant strains. To that end, we sequenced the isotype 1 of the beta tubulin gene, in which mutations have been associated with benzimidazole resistance. 
We found that sheep and ibex have very similar nemabiomes before even this two species shared pasture and parasites, except for few nematode species, such as Marshallagia marshalli and Trichostrongylus axei. This suggests that the long-term co-occurrence of sheep and ibex on mountain pastures has promoted the exchange of gastrointestinal nematodes between sheep and ibex. The presence of sheep modified the nemabiome of ibex which may consequently cause a reduction of ibex fitness. Resistant nematodes were found on all sheep farms and in all Ibex populations, demonstrating that Ibex can host and shed resistant strains before transhumant sheep arrive on pastures. However, the relative contribution of ibex to nemabiome and the abundance of resistant nematodes in sheep remain to be determined.
DOI: 10.17632/cm97cg87d6.2
title: Nemabiome of ibex and transhumant sheep

description: Wild and domestic ungulates can be infected with the same species of gastrointestinal parasitic nematodes. These parasitic nematodes have a free leaving stage in the environment that contributes to the ease of transmission of gastrointestinal nematodes at the interface of different host species. In addition, gastrointestinal nematodes have developed resistance to anthelmintics which is now considered a major problem for the livestock industry. In a context where wild and domestic ungulates share the same pastures, cross-transmission of resistant gastrointestinal nematodes between species could occur. 
In the Alps, domestic sheep are driven in the mountains each summer in areas where wild ungulates live. In particular, the Alpine ibex, Capra ibex is a protected mountain ungulate that is phylogenetically related to sheep and hosts nematode species common to sheep. In this study we investigated the nemabiome of sheep and ibex in three different areas of the French Alps to evaluate the parasites flow between the two host species. Our investigations are based on the metabarcoding of the ITS2 rDNA nemabiome using next generation sequencing. We also determined the frequency of anthelmintic-resistant nematodes in sheep and ibex to determine if ibex can host resistant strains. To that end, we sequenced the isotype 1 of the beta tubulin gene, in which mutations have been associated with benzimidazole resistance. 
We found that sheep and ibex have very similar nemabiomes before even this two species shared pasture and parasites, except for few nematode species, such as Marshallagia marshalli and Trichostrongylus axei. This suggests that the long-term co-occurrence of sheep and ibex on mountain pastures has promoted the exchange of gastrointestinal nematodes between sheep and ibex. The presence of sheep modified the nemabiome of ibex which may consequently cause a reduction of ibex fitness. Resistant nematodes were found on all sheep farms and in all Ibex populations, demonstrating that Ibex can host and shed resistant strains before transhumant sheep arrive on pastures. However, the relative contribution of ibex to nemabiome and the abundance of resistant nematodes in sheep remain to be determined.
DOI: 10.17632/jw6kthb456.1
title: Manuscript data: Influence of experience level on the tactical performance cost generated by executing a secondary task in soccer players during small-sided games.

description: This study aimed to assess the influence of experience level on the cost of tactical performance incurred by carrying out a secondary task in soccer players during Small-Sided Games.
DOI: 10.17632/fpsfv4xhxk.1
title: Lower-Zone_Bushveld-Complex

description: Geochemical data collected for Lower Zone samples and a chilled margin sample from the Bushveld Complex
DOI: 10.17632/df42bwxx6p.1
title: Chinese Social Media Infodemic Database (CSMID)

description: A database for infodemic (include Covid-related contents, 2024.03) storage in Sina-Weibo, and related research.
DOI: 10.17632/fkpwjyns4t.1
title: Emulsification of Heavy Oil Using Nano-Clay Particles in High Salinity Brine for Conformance Control

description: dataset
DOI: 10.17632/xfd9sfxyvg.1
title: Voltage controlled piezoelectric material - Simdata

description: Simulated system response of the piezoelectric composite models presented in: On modelling and stabilizability of voltage controlled piezoelectric material by Matthijs C. de Jong and Jacquelien M. A. Scherpen. 
The data is gathered by simulating the spatially discretized system models using:
dx/dt = An_all x + Bn_all u
y = Cm_all_new x + Dn_all u
The open-loop data for the static and quasi-static is available upon request due to storage limitations (2 x 18.216.046 KB)
send an email to: matthijs.de.jong@rug.nl
DOI: 10.17632/wg7swwf6jr.2
title: Prominent CD8 + T cell responses are directed at novel conserved influenza B virus epitopes across anatomical sites and age groups

description: The files in this data repository contain the T cell receptor sequences described in the following study:

Prominent CD8+ T cell responses are directed at novel conserved influenza B virus epitopes across anatomical sites and age groups
Tejas Menon, Patricia T. Illing, Priyanka Chaurasia, Hayley A. McQuilten, Chloe Shepherd, Louise C. Rowntree, Jan Petersen, Dene R. Littler, Grace Khuu, Ziyi Huang, Lilith F. Allen, Steve Rockman, Jane Crowe, Katie L. Flanagan, Linda M. Wakim, Thi H. O. Nguyen, Nicole A. Mifsud, Jamie Rossjohn, Anthony W. Purcell, Carolien E van de Sandt and Katherine Kedzierskafiles in
DOI: 10.17632/wg7swwf6jr.3
title: Prominent CD8 + T cell responses are directed at novel conserved influenza B virus epitopes across anatomical sites and age groups

description: The files in this data repository contain the T cell receptor sequences described in the following study:

Prominent CD8+ T cell responses are directed at novel conserved influenza B virus epitopes across anatomical sites and age groups
Tejas Menon, Patricia T. Illing, Priyanka Chaurasia, Hayley A. McQuilten, Chloe Shepherd, Louise C. Rowntree, Jan Petersen, Dene R. Littler, Grace Khuu, Ziyi Huang, Lilith F. Allen, Steve Rockman, Jane Crowe, Katie L. Flanagan, Linda M. Wakim, Thi H. O. Nguyen, Nicole A. Mifsud, Jamie Rossjohn, Anthony W. Purcell, Carolien E van de Sandt and Katherine Kedzierskafiles in
DOI: 10.17632/wpgrzt2szp.1
title: Gustavo Delgado Parra

description: Historic organs in México, a research on historical performance practices, preservation, restoration and reuse of historic organs in México. Composition of new works for organ.
DOI: 10.17632/2m3tc2g85z.1
title: Research on the morphological characteristics of Moso bamboo forests

description: This is field study data on the aboveground biomass of Moso bamboo.
DOI: 10.17632/wjyk3z4b5f.1
title: Study of Nuclear Actin-dependent Meg3 Expression

description: This study investigates nuclear actin-dependent Meg3 expression suppression of metabolic genes by affecting promoter and promoter-enhancer interactions at sites of elevated H3K27 acetylation levels
DOI: 10.17632/c24g4md953.1
title: Automatic measurement of hallux valgus angle

description: This is the dataset for the article, 'Automatic estimation of hallux valgus angle using deep neural network with axis-based annotation '. This dataset contains the developed deep neural network model, automatic HVA measurement application utilizing the neural network, and statistical analysis code used for the validation cohort to evaluate the accuracy of the neural network model. This dataset does not include the patient's radiographs because of the privacy concerns.
DOI: 10.17632/c24g4md953.2
title: Automatic measurement of hallux valgus angle

description: This is the dataset for the article, 'Automatic estimation of hallux valgus angle using deep neural network with axis-based annotation '. (Takeda et.al., Skeletal Radiology 2024)
https://link.springer.com/article/10.1007/s00256-024-04618-2
Cite this paper when you use this newral network model for research purposes.

This dataset contains the developed deep neural network model, automatic HVA measurement application utilizing the neural network,
 and statistical analysis code used for the validation cohort to evaluate the accuracy of the neural network model.

This dataset does not include the patient's radiographs because of the privacy concerns.
DOI: 10.17632/4dptwx6vyg.1
title: Holographic scraping therapy alleviated the stress level in convalescent soldiers

description: supplementary video and scores of SAI and cortisol.
DOI: 10.17632/c95f8nn9c3.1
title: Coupled Pacific Rim megadroughts contributed to the fall of Ming Dynasty’s capital in 1644 CE

description: Historical documents provide evidence for regional droughts preceding the political turmoil and fall of Beijing in 1644 CE, and more than 20 million people died in northern China over the late Ming famine period. However, the significance of environmental drivers and large-scale spatiotemporal climatic patterns that could perhaps be linked with this major unrest remain unknown. Here, we provide evidence for persistent megadroughts from 1576-1593 and 1624-1643 derived from a tree-ring network across northern China and coinciding with exceptionally cold conditions just before the fall of Beijing. We show that these regional deviations are part of a series of megadroughts along the Pacific Rim, which not only impacted the ecology and society in monsoonal northern China, but also exacerbated external geopolitical and economic pressures. This conclusion is supported by last millennium reanalysis and numerical model simulations revealing internally driven Pacific sea surface temperature variations and the predominance of decadal scale La Niña-like conditions to be the drivers of decreased rainfall in northern China and the North and South American monsoon regions. These teleconnective patterns provide a mechanistic explanation for reoccurring drought during the late Ming Dynasty and the environmental framework fostering the fall of Ming Dynasty’s capital in 1644 CE.
DOI: 10.17632/c95f8nn9c3.2
title: Coupled Pacific Rim megadroughts contributed to the fall of Ming Dynasty’s capital in 1644 CE

description: Historical documents provide evidence for regional droughts preceding the political turmoil and fall of Beijing in 1644 CE, and more than 20 million people died in northern China over the late Ming famine period. However, the significance of environmental drivers and large-scale spatiotemporal climatic patterns that could perhaps be linked with this major unrest remain unknown. Here, we provide evidence for persistent megadroughts from 1576-1593 and 1624-1643 derived from a tree-ring network across northern China and coinciding with exceptionally cold conditions just before the fall of Beijing. We show that these regional deviations are part of a series of megadroughts along the Pacific Rim, which not only impacted the ecology and society in monsoonal northern China, but also exacerbated external geopolitical and economic pressures. This conclusion is supported by last millennium reanalysis and numerical model simulations revealing internally driven Pacific sea surface temperature variations and the predominance of decadal scale La Niña-like conditions to be the drivers of decreased rainfall in northern China and the North and South American monsoon regions. These teleconnective patterns provide a mechanistic explanation for reoccurring drought during the late Ming Dynasty and the environmental framework fostering the fall of Ming Dynasty’s capital in 1644 CE.
DOI: 10.17632/s6mm9vxcmt.1
title: Normalized values and suitability scores of the seven relevant criteria

description: These data represent the normalized values of the seven criteria namely slope, wind speed, distance to residential, distance to roads, distance to transmission lines, land cover, and soil texture extracted from rasters and their corresponding suitability scores.
DOI: 10.17632/r6p9wnsn6j.1
title: MicroRNA-142-3p alleviated high salt-induced cardiac fibrosis via downregulating optineurin-mediated mitophagy

description: Original weatern blot images of "MicroRNA-142-3p alleviated high salt-induced cardiac fibrosis via downregulating optineurin-mediated mitophagy".
DOI: 10.17632/y45f2sxvbc.1
title: Efficient gold scavenging by iron sulfide colloids in an epizonal orogenic gold deposit

description: Data in the manuscript by Ya-Fei Wu et al. to be published by Geochimica et Cosmochimica Acta as " Efficient gold scavenging by iron sulfide colloids in an epizonal orogenic gold deposit".
DOI: 10.17632/nx398vf5wr.1
title: Predictive AI model

description: Predictive AI model
DOI: 10.17632/d237tvj59v.1
title: Do consumer groups contribute satisfactory findings towards improving food handling practices of food premises? In-depth statistical evidence of the three-arm, controlled, non-randomized community trial

description: Dataset for manuscript : available
DOI: 10.17632/xs376cr38y.1
title: Effect of shoes on coordination and foot pressure in collegiates

description: Various collar heights exist, ranging from low-cut styles that maximize ankle mobility to high-tops that prioritize support. Elucidating the relationship between shoe collar height and movement patterns and plantar pressure can help develop additional tool for crafting personalized gait retraining and balance improvement programs. The objective of the study is to find out the impact of cut height of footwear on lower extremity coordination and foot pressure distribution among young adults.
DOI: 10.17632/g8jrn8dx65.1
title: Data

description: Crude oil and clean tanker freight
DOI: 10.17632/w7gwsfbz89.1
title: Female legislators

description: This data paper presents a reconstruction of American women who ran for state and territorial legislative offices.
DOI: 10.17632/w7gwsfbz89.2
title: Female legislators

description: This data paper presents a reconstruction of American women who ran for state and territorial legislative offices.
DOI: 10.17632/p95ck4wpcx.3
title: Patience_BMRT

description: Data and code necessary to replicate the paper "Patience decreases with age for the poor but not for the rich: An international comparison" by Burro, G.; Mcdonald, R.; Read, D. and Taj, U.
Patience_code_JEBO contains code to replicate the version of the paper accepted at the Journal of Economic Behavior and Organization.
Patience_code_SSRN contains code to replicate the version available on SSRN, which contains more analyses in the appendix with respect to the JEBO version.
DOI: 10.17632/p95ck4wpcx.1
title: Patience_BMRT

description: Data and code necessary to replicate the paper "Patience decreases with age for the poor but not for the rich: An international comparison" by Burro, G.; Mcdonald, R.; Read, D. and Taj, U.
DOI: 10.17632/p95ck4wpcx.2
title: Patience_BMRT

description: Data and code necessary to replicate the paper "Patience decreases with age for the poor but not for the rich: An international comparison" by Burro, G.; Mcdonald, R.; Read, D. and Taj, U.
Patience_code_JEBO contains code to replicate the version of the paper accepted at the Journal of Economic Behavior and Organization.
Patience_code_SSRN contains code to replicate the version available on SSRN, which contains more analyses in the appendix with respect to the JEBO version.
DOI: 10.17632/p95ck4wpcx.4
title: Patience_BMRT

description: Data and code necessary to replicate the paper "Patience decreases with age for the poor but not for the rich: An international comparison" by Burro, G.; Mcdonald, R.; Read, D. and Taj, U.
Patience_code_JEBO contains code to replicate the version of the paper accepted at the Journal of Economic Behavior and Organization.
Patience_code_SSRN contains code to replicate the version available on SSRN, which contains more analyses in the appendix with respect to the JEBO version.
DOI: 10.17632/gb44zw5j24.1
title: A Window into Early Math Development: An Observational Study of Skills and Strategies

description: This study examined the numeracy skills and strategies of grade 3 learners through a descriptive observational design, utilizing the EGMA tool to evaluate their proficiency in various mathematical areas. A cohort of 28 students partook in the assessment, revealing strong performances in number identification and discrimination. However, a notable portion struggled to reach mastery in missing number identification, indicating a necessity for focused instruction. Results showed varied success rates in addition, subtraction, and word problems, with over 50% of students falling below the 75% proficiency threshold in these areas. The predominant subtraction strategy involved a blend of fingers/tick marks and paper and pencil, while mental calculation and paper and pencil alone were less common. Word problem solving predominantly relied on mental calculation, followed by fingers/tick marks and combined strategies. This study underscores the strengths and weaknesses of grade 3 learners in fundamental numeracy skills. While proficiency was evident in some areas, others like missing number identification, addition, subtraction, and word problems require targeted support. Future research with larger samples and enhanced methodologies can further explore these findings to inform interventions aimed at bolstering numeracy development in grade 3 students. Evaluating diverse instructional approaches may also be beneficial in addressing identified areas of need effectively.