cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12680664
title: Additional file 2 of Meningioma cells express primary cilia but do not transduce ciliary Hedgehog signals

description: Additional file 2: Supplementary Table S1. Meningioma characteristics. For binary variables such as skull base location, recurrent presentation, prior surgery, prior radiotherapy, GTR, local failure, and death, 1 denotes an event and 0 denotes the absence of an event. Male sex is denoted as 1, and female sex is denoted as 0. Radiotherapy target delineation software (MIM, Cleveland, OH) was used to contour and calculate meningioma volumes. Time to failure and survival time is shown in years. Ciliary length is shown in micrometers.
DOI: 10.6084/m9.figshare.12680668.v1
title: Additional file 2 of Enhancer prediction in the human genome by probabilistic modelling of the chromatin feature patterns

description: Additional file 2 ENCODE accession numbers of files and datasets with direct web links. This file contains the Supplementary Tables S3–S5. The ENCODE accession numbers of the files and datasets analysed in this study, as well as the direct links to download the K562 cell line data and the GM12878 cell line data are provided as Table S3 and Table S4, respectively. Table S5 provides the web link to the GENCODE annotation file employed in the study as well as the ENCODE accession numbers to the blacklisted genomic regions. Tables S3–S5 provide also additional information such as assay, experiment target, data producing laboratory, and the Gene Expression Omnibus (GEO) sample accession numbers. Excel (.xlsx) file of size 66.2 kB.
DOI: 10.6084/m9.figshare.12680664.v1
title: Additional file 2 of Meningioma cells express primary cilia but do not transduce ciliary Hedgehog signals

description: Additional file 2: Supplementary Table S1. Meningioma characteristics. For binary variables such as skull base location, recurrent presentation, prior surgery, prior radiotherapy, GTR, local failure, and death, 1 denotes an event and 0 denotes the absence of an event. Male sex is denoted as 1, and female sex is denoted as 0. Radiotherapy target delineation software (MIM, Cleveland, OH) was used to contour and calculate meningioma volumes. Time to failure and survival time is shown in years. Ciliary length is shown in micrometers.
DOI: 10.6084/m9.figshare.12680652
title: Additional file 5 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 5. Logistic regression of factors associated with being dispensed an opioid analgesic. OAT: opioid agonist therapy; cOR: crude odds ratio; aOR: adjusted odds ratio; CI: confidence interval. * The type of OAT opioid that was dispensed on the last dispensation per year. ** We defined the OAT opioid dose ratio as a mean daily dose of dispensed OAT opioids divided by mean recommended dose of OAT opioids per day (18 mg buprenorphine or 18/4.5 mg buprenorphine/naloxone, 90 mg methadone or 45 mg levomethadone). A ratio of one indicated that patients were dispensed a mean daily dose of OAT opioids equal to the mean recommended dose per day. The table displays the association between being dispensed an opioid analgesic and age groups, gender, palliative care, chronic pain, the number of dispensations of OAT opioids, the type of dispensed OAT opioid, and the OAT opioid dose ratio among patients who were dispensed an OAT opioid at least monthly per year in the period 2013–2017.
DOI: 10.6084/m9.figshare.12680646
title: Additional file 3 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 3. Defined daily doses (DDD) of OAT opioids and opioid analgesics converted to milligrams and morphine equivalents. DDD: Defined daily doses; OMEQ: oral morphine equivalents. The table displays the conversion of defined daily doses (DDD) to milligrams according to the WHOs’ standards (1) and the calculations of opioid analgesics to morphine equivalents (2). Only opioid analgesics that had marketing authorizations in Norway in the study period were included. (1) Definition and general considerations. In: https://www.whocc.no/ddd/ definition_and_general_considera/#Definition . WHO Collaborating Centre for Drug Statistics; 2019.(2) Svendsen K, Borchgrevink P, Fredheim O, Hamunen K, Mellbye A, Dale O: Choosing the unit of measurement counts: the use of oral morphine equivalents in studies of opioid consumption is a useful addition to defined daily doses. Palliat Med 2011, 25(7):725–732.
DOI: 10.6084/m9.figshare.12680649
title: Additional file 4 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 4. Logistic regression of factors associated with being dispensed an opioid analgesic OAT = opioid agonist therapy; cOR = crude odds ratio; aOR = adjusted odds ratio; CI = confidence interval. * The type of OAT opioid that was dispensed on the last dispensation per year ** We defined the OAT opioid dose ratio as a mean daily dose of dispensed OAT opioids divided by mean recommended daily dose of OAT opioids (18 mg buprenorphine or 18/4.5 mg buprenorphine/naloxone, 90 mg methadone or 45 mg levomethadone). A ratio of one indicated that patients were dispensed a mean daily dose of OAT opioids equal to the mean recommended dose per day. The table displays the association between being dispensed an opioid analgesic and age groups, gender, palliative care, chronic pain, the number of dispensations of OAT opioids, the type of dispensed OAT opioid, and the OAT opioid dose ratio among all patients who were dispensed an OAT opioid in the period 2013–2016.
DOI: 10.6084/m9.figshare.12680652.v1
title: Additional file 5 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 5. Logistic regression of factors associated with being dispensed an opioid analgesic. OAT: opioid agonist therapy; cOR: crude odds ratio; aOR: adjusted odds ratio; CI: confidence interval. * The type of OAT opioid that was dispensed on the last dispensation per year. ** We defined the OAT opioid dose ratio as a mean daily dose of dispensed OAT opioids divided by mean recommended dose of OAT opioids per day (18 mg buprenorphine or 18/4.5 mg buprenorphine/naloxone, 90 mg methadone or 45 mg levomethadone). A ratio of one indicated that patients were dispensed a mean daily dose of OAT opioids equal to the mean recommended dose per day. The table displays the association between being dispensed an opioid analgesic and age groups, gender, palliative care, chronic pain, the number of dispensations of OAT opioids, the type of dispensed OAT opioid, and the OAT opioid dose ratio among patients who were dispensed an OAT opioid at least monthly per year in the period 2013–2017.
DOI: 10.6084/m9.figshare.12680643
title: Additional file 2 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 2. Included opioids. ATC: Anatomical Therapeutic Chemical. All included opioids with ATC codes categorized into opioid analgesics and opioid agonist therapy opioids.
DOI: 10.6084/m9.figshare.12680646.v1
title: Additional file 3 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 3. Defined daily doses (DDD) of OAT opioids and opioid analgesics converted to milligrams and morphine equivalents. DDD: Defined daily doses; OMEQ: oral morphine equivalents. The table displays the conversion of defined daily doses (DDD) to milligrams according to the WHOs’ standards (1) and the calculations of opioid analgesics to morphine equivalents (2). Only opioid analgesics that had marketing authorizations in Norway in the study period were included. (1) Definition and general considerations. In: https://www.whocc.no/ddd/ definition_and_general_considera/#Definition . WHO Collaborating Centre for Drug Statistics; 2019.(2) Svendsen K, Borchgrevink P, Fredheim O, Hamunen K, Mellbye A, Dale O: Choosing the unit of measurement counts: the use of oral morphine equivalents in studies of opioid consumption is a useful addition to defined daily doses. Palliat Med 2011, 25(7):725–732.
DOI: 10.6084/m9.figshare.12680649.v1
title: Additional file 4 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 4. Logistic regression of factors associated with being dispensed an opioid analgesic OAT = opioid agonist therapy; cOR = crude odds ratio; aOR = adjusted odds ratio; CI = confidence interval. * The type of OAT opioid that was dispensed on the last dispensation per year ** We defined the OAT opioid dose ratio as a mean daily dose of dispensed OAT opioids divided by mean recommended daily dose of OAT opioids (18 mg buprenorphine or 18/4.5 mg buprenorphine/naloxone, 90 mg methadone or 45 mg levomethadone). A ratio of one indicated that patients were dispensed a mean daily dose of OAT opioids equal to the mean recommended dose per day. The table displays the association between being dispensed an opioid analgesic and age groups, gender, palliative care, chronic pain, the number of dispensations of OAT opioids, the type of dispensed OAT opioid, and the OAT opioid dose ratio among all patients who were dispensed an OAT opioid in the period 2013–2016.
DOI: 10.6084/m9.figshare.12680643.v1
title: Additional file 2 of Too much or too little opioids to patients receiving opioid agonist therapy in Norway (2013–2017): a prospective cohort study

description: Additional file 2. Included opioids. ATC: Anatomical Therapeutic Chemical. All included opioids with ATC codes categorized into opioid analgesics and opioid agonist therapy opioids.
DOI: 10.6084/m9.figshare.12680631
title: Additional file 2 of First investigation of Staphylococcus argenteus in a Brazilian collections of S. aureus isolated from bovine mastitis

description: Additional file 2: S2 Table. Presence of mecA and the operon crtOPQMN genes among non-pigmented S. aureus strains isolated from cows with clinical and subclinical mastitis, in different states in Brazil.
DOI: 10.6084/m9.figshare.12680628
title: Additional file 1 of First investigation of Staphylococcus argenteus in a Brazilian collections of S. aureus isolated from bovine mastitis

description: Additional file 1: S1 Table. Distribuition of the non-pigmented S. aureus strains isolated from the milk of cows with clinical and subclinical mastitis, among the different states in Brazil.
DOI: 10.6084/m9.figshare.12680631.v1
title: Additional file 2 of First investigation of Staphylococcus argenteus in a Brazilian collections of S. aureus isolated from bovine mastitis

description: Additional file 2: S2 Table. Presence of mecA and the operon crtOPQMN genes among non-pigmented S. aureus strains isolated from cows with clinical and subclinical mastitis, in different states in Brazil.
DOI: 10.6084/m9.figshare.12680628.v1
title: Additional file 1 of First investigation of Staphylococcus argenteus in a Brazilian collections of S. aureus isolated from bovine mastitis

description: Additional file 1: S1 Table. Distribuition of the non-pigmented S. aureus strains isolated from the milk of cows with clinical and subclinical mastitis, among the different states in Brazil.
DOI: 10.6084/m9.figshare.12680590
title: Additional file 2 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 2: Supplementary Table 2. NVGRP and HVRx Sliding windows analysis (400 kb windows) for pi, theta and Tajima’s D. Data in SupplementaryTable2_PopoolationResults.
DOI: 10.6084/m9.figshare.12680593
title: Additional file 3 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 3: Supplementary Table 3. Results for sex ratio and clutch size GWAS in NVGRP. Worksheets show: Significantly associated SNPs for sex ratio, All GWAS results for sex ratio and All GWAS results for clutch size. Data in SupplementaryTable3_GWAS_Candidate_and_All_SNPs.
DOI: 10.6084/m9.figshare.12680596
title: Additional file 4 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 4: Supplementary Table 4. Linkage disequilibrium (r2) between 18 SNPs significantly associated with sex ratio in the 25 NVGRP lines. Data in SupplementaryTable4_r2_Matrix.
DOI: 10.6084/m9.figshare.12680590.v1
title: Additional file 2 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 2: Supplementary Table 2. NVGRP and HVRx Sliding windows analysis (400 kb windows) for pi, theta and Tajima’s D. Data in SupplementaryTable2_PopoolationResults.
DOI: 10.6084/m9.figshare.12680587
title: Additional file 1 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 1: Supplementary Table 1. Sequencing statistics NVGRP. For each NVGRP iso-female line, the total number of clean reads (million reads), the total number of clean bases (Gb), percentage of nucleotides with a read quality higher than 20 (Q20 percentage), GC content (GC %), total number of reads mapped to Nvit 2.1 assembly (million reads), total number of nucleotides covered (Mb) and the percentage of Nvit 2.1 assembly covered (percentage) is given. Data in SupplementaryTable1.
DOI: 10.6084/m9.figshare.12680596.v1
title: Additional file 4 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 4: Supplementary Table 4. Linkage disequilibrium (r2) between 18 SNPs significantly associated with sex ratio in the 25 NVGRP lines. Data in SupplementaryTable4_r2_Matrix.
DOI: 10.6084/m9.figshare.12680587.v1
title: Additional file 1 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 1: Supplementary Table 1. Sequencing statistics NVGRP. For each NVGRP iso-female line, the total number of clean reads (million reads), the total number of clean bases (Gb), percentage of nucleotides with a read quality higher than 20 (Q20 percentage), GC content (GC %), total number of reads mapped to Nvit 2.1 assembly (million reads), total number of nucleotides covered (Mb) and the percentage of Nvit 2.1 assembly covered (percentage) is given. Data in SupplementaryTable1.
DOI: 10.6084/m9.figshare.12680593.v1
title: Additional file 3 of Genomics of sex allocation in the parasitoid wasp Nasonia vitripennis

description: Additional file 3: Supplementary Table 3. Results for sex ratio and clutch size GWAS in NVGRP. Worksheets show: Significantly associated SNPs for sex ratio, All GWAS results for sex ratio and All GWAS results for clutch size. Data in SupplementaryTable3_GWAS_Candidate_and_All_SNPs.
DOI: 10.6084/m9.figshare.12680566
title: Additional file 7 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 7: Table S2. List of full-length CYPs of J. aquatica identified in this study. aCellular location of the protein predicted by TargetP. “C” chloroplast; “S” secreted; “_” any other location; “*” unknown. bnot available. cKEGG Orthology.
DOI: 10.6084/m9.figshare.12680566.v1
title: Additional file 7 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 7: Table S2. List of full-length CYPs of J. aquatica identified in this study. aCellular location of the protein predicted by TargetP. “C” chloroplast; “S” secreted; “_” any other location; “*” unknown. bnot available. cKEGG Orthology.
DOI: 10.6084/m9.figshare.12680554
title: Additional file 4 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 4. Functional annotation and structural analysis of Ja2 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680563
title: Additional file 6 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 6: Table S1. List of full-length CYPs of J. vulgaris identified in this study. aCellular location of the protein predicted by TargetP. “C” chloroplast; “S” secreted; “_” any other location; “*” unknown. bnot available. cKEGG Orthology.
DOI: 10.6084/m9.figshare.12680551
title: Additional file 3 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 3. Functional annotation and structural analysis of Ja1 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680563.v1
title: Additional file 6 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 6: Table S1. List of full-length CYPs of J. vulgaris identified in this study. aCellular location of the protein predicted by TargetP. “C” chloroplast; “S” secreted; “_” any other location; “*” unknown. bnot available. cKEGG Orthology.
DOI: 10.6084/m9.figshare.12680548
title: Additional file 2 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 2. Functional annotation and structural analysis of Jv2 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680551.v1
title: Additional file 3 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 3. Functional annotation and structural analysis of Ja1 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680554.v1
title: Additional file 4 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 4. Functional annotation and structural analysis of Ja2 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680545
title: Additional file 1 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 1. Functional annotation and structural analysis of Jv1 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680548.v1
title: Additional file 2 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 2. Functional annotation and structural analysis of Jv2 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680542
title: Additional file 13 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 13: Table S3. Details of sample sets of J. vulgaris and J. aquatica for deep sequencing analysis. *cDNA library was normalized with duplex-specific thermostable nuclease to remove abundant library molecules.
DOI: 10.6084/m9.figshare.12680545.v1
title: Additional file 1 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 1. Functional annotation and structural analysis of Jv1 transcriptome. The file contains the information of gene functional annotation, InDels, structural variants and simple sequence repeats (SSRs).
DOI: 10.6084/m9.figshare.12680542.v1
title: Additional file 13 of Diversity and evolution of cytochrome P450s of Jacobaea vulgaris and Jacobaea aquatica

description: Additional file 13: Table S3. Details of sample sets of J. vulgaris and J. aquatica for deep sequencing analysis. *cDNA library was normalized with duplex-specific thermostable nuclease to remove abundant library molecules.
DOI: 10.6084/m9.figshare.12680509
title: Additional file 6 of Satisfaction in parturients receiving epidural analgesia after prenatal shared decision-making intervention: a prospective, before-and-after cohort study

description: Additional file 6. The raw data. The raw data of the 200 file-questionnaires.
DOI: 10.6084/m9.figshare.12680509.v1
title: Additional file 6 of Satisfaction in parturients receiving epidural analgesia after prenatal shared decision-making intervention: a prospective, before-and-after cohort study

description: Additional file 6. The raw data. The raw data of the 200 file-questionnaires.
DOI: 10.6084/m9.figshare.12680496
title: Additional file 2 of Endoscopic severe mucosal atrophy indicates the presence of gastric cancer after Helicobacter pylori eradication -analysis based on the Kyoto classification

description: Additional file 2: Supplementary Table 2. Calculated probability of gastric cancer in all subjects.
DOI: 10.6084/m9.figshare.12680496.v1
title: Additional file 2 of Endoscopic severe mucosal atrophy indicates the presence of gastric cancer after Helicobacter pylori eradication -analysis based on the Kyoto classification

description: Additional file 2: Supplementary Table 2. Calculated probability of gastric cancer in all subjects.
DOI: 10.6084/m9.figshare.12680493
title: Additional file 1 of Endoscopic severe mucosal atrophy indicates the presence of gastric cancer after Helicobacter pylori eradication -analysis based on the Kyoto classification

description: Additional file 1: Supplementary Table 1. Early gastric cancers in the 43 subjects with ESD.
DOI: 10.6084/m9.figshare.12680493.v1
title: Additional file 1 of Endoscopic severe mucosal atrophy indicates the presence of gastric cancer after Helicobacter pylori eradication -analysis based on the Kyoto classification

description: Additional file 1: Supplementary Table 1. Early gastric cancers in the 43 subjects with ESD.
DOI: 10.6084/m9.figshare.12680440
title: Additional file 1 of LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks

description: Additional file 1: Supplementary Table 1. provides more details about the logic function calls that are made by the LogicNet in the regulatory factor-target gene interactions, in the yeast database.
DOI: 10.6084/m9.figshare.12680440.v1
title: Additional file 1 of LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks

description: Additional file 1: Supplementary Table 1. provides more details about the logic function calls that are made by the LogicNet in the regulatory factor-target gene interactions, in the yeast database.
DOI: 10.6084/m9.figshare.12680344
title: Additional file 5 of Experiences of an earthquake during pregnancy, antenatal mental health and infants’ birthweight in Bhaktapur District, Nepal, 2015: a population-based cohort study

description: Additional file 5. Questionnaires. English version of the set of Questionnaires that used to collect primary data
DOI: 10.6084/m9.figshare.12680344.v1
title: Additional file 5 of Experiences of an earthquake during pregnancy, antenatal mental health and infants’ birthweight in Bhaktapur District, Nepal, 2015: a population-based cohort study

description: Additional file 5. Questionnaires. English version of the set of Questionnaires that used to collect primary data
DOI: 10.6084/m9.figshare.12680272
title: Additional file 4 of Characterization of the bacterial communities of psyllids associated with Rutaceae in Bhutan by high throughput sequencing

description: Additional file 4: Supplementary Table 2. Sample metadata and alpha diversity metrics.