cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2d3dfc
title: CCDC 2207802: Experimental Crystal Structure Determination

description: Related Article: Tatyana V. Balashova, Maxim V. Arsenyev, Svetlana K. Polyakova, Vasily A. Ilichev, Roman V. Rumyantcev, Georgy K. Fukin, Artem N. Yablonskiy, Mikhail N. Bochkarev|2023|New J.Chem.|47|9164|doi:10.1039/D3NJ00625E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d3dgd
title: CCDC 2207803: Experimental Crystal Structure Determination

description: Related Article: Tatyana V. Balashova, Maxim V. Arsenyev, Svetlana K. Polyakova, Vasily A. Ilichev, Roman V. Rumyantcev, Georgy K. Fukin, Artem N. Yablonskiy, Mikhail N. Bochkarev|2023|New J.Chem.|47|9164|doi:10.1039/D3NJ00625E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dl2fj
title: CCDC 2221907: Experimental Crystal Structure Determination

description: Related Article: Jiayao Zhang, Saurav Bhattacharya, Anja B. Müller, Levente Kiss, Cristian Silvestru, Nikolai Kuhnert, Ulrich Kortz|2023|Chem.Commun.|59|5918|doi:10.1039/D3CC00243H
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/5717538
title: USGS Colorado Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717518
title: USGS California Streamgages May 2023
DOI: 10.21227/3fj8-b212
title: behavior

description: The employee (white-collar) behavioral from Indian IT industry where data has various features like age, gender, training (TR), creativity (CR), psychological contract fulfilment (PC) and organizational citizenship behavior (OCB). The scales are likert scales ranging from "1 to 5" where "5" being highest and "1" being lowest, and are adapted from different HRM core papers. Each scale is independent and can be used separately. The data is behavioral in nature. The reliability of the construct was tested using Cronbach’s alpha resulting in 0.959. The scales have been previously tested with traditional methodologies but not with similar combinations. The data has multiple columns and rows.
DOI: 10.34740/kaggle/dsv/5717495
title: USGS Arkansas Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717451
title: USGS Alaska Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717420
title: USGS Alabama Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5713025
title: USGS New York Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5712931
title: USGS Arizona Streamgages May 2023
DOI: 10.25345/c5jd4q038
title: MassIVE MSV000091987 - Molecular signatures of T cells targeting multiple myeloma
title: Wagner TR, Kehl N, Steiger S, Kilian M, Foster K, Boschert T, Hernandez GM, Abelin JG, Lindner K, Sester LS, Frenking JH, Schonfelder B, Schumacher S, Green EW, Bunse L, Chain B, Muller-Tidow C, Goldschmidt H, Weinhold N, Carr SA, Yong K, Rippe K, Raab MS, Platten M, Eichmuller SB, and Friedrich MJ. 2023. T cell receptors (TCRs) play a pivotal role in orchestrating cellular immunity in health and disease. Endogenous or synthetically amplified T cell responses can either control or eliminate tumors. Although frequent clinical responses to immunotherapy and stem cell transplantation have been observed in hematological cancers, the antigen specificities and phenotypes of tumor reactive TCRs have not been characterized in these largely low immunogenic entities. Here, we have addressed this issue by developing and applying a multiplexed optical barcoding workflow for TCR specificity. It allows for rapid profiling of single bone marrow-resident T cells and mapping of TCR specificity to the original cell state in situ. We found that non-tumor reactive clones were either CD4+ or enriched for viral specificities, while tumor reactive T cells demonstrated clonal expansion and acquired an effector-memory phenotype. The tumor reactivity state was associated with a gene expression signature that diverges from lymphocytes infiltrating solid tumors and included CD29, which we identified as an indicator of antigen-specific T cell homing. Our approach further enabled the predictive identification tumor controlling TCRs in two patient cohorts undergoing autologous stem cell transplantation and bispecific antibody treatment, respectively. These data suggest clinically relevant endogenous anti-tumor reactivity in a subset of bone marrow-resident T cells and provide the rationale for monitoring and engineering tumor reactive T cell responses to target hematological cancers. The platform established here further allows for the antigen-agnostic identification of tumor-reactive TCRs with therapeutic potential.
DOI: 10.5281/zenodo.7948878
title: amazona_ventralis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7948877
title: amazona_ventralis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7948890
title: Quantifying Interseismic Volume Strain from Chemical Mass-Balance Analysis in Tectonic Mélanges

description: Here, we present element concentrations in scaly fabrics, mudstone protoliths, and mineral veins of six tectonic mélanges units in the Cretaceous Shimanto belt and three mélanges units in the Kodiak accretionary complex measured with LA-ICPMS. We then employed chemical mass-balance analysis utilizing this dataset to quantify the strain related to mass transfer along the plate interface. The ensuing results, presented in this report, reveal a notable distinction in average volumetric strain between individual scaly fabrics of the Lower Mugi and Makimine mélanges, which experienced temperatures near the updip and downdip isotherms bounding the seismogenic zone, respectively. To gain further insights, we combined image analysis techniques to integrate the strain over specific areas of interest. Additionally, we compared the volume loss in scaly fabrics with the volume gain, which was represented by the proportion of mineral veins in those areas. The findings indicate a growing discrepancy between volume loss and volume gain in mélanges with higher paleotemperature records.
DOI: 10.34740/kaggle/dsv/5717682
title: USGS Hawaii Streamgages May 2023
DOI: 10.6084/m9.figshare.22935872
title: Test data for OncoMerge.

description: This is the BLCA bladder carcinoma data from the TCGA used as a test dataset to demonstrate how to use the OncoMerge algorithm.
DOI: 10.6084/m9.figshare.22935872.v1
title: Test data for OncoMerge.

description: This is the BLCA bladder carcinoma data from the TCGA used as a test dataset to demonstrate how to use the OncoMerge algorithm.
DOI: 10.34740/kaggle/dsv/5717705
title: USGS Iowa Streamgages May 2023
DOI: 10.25934/pr00007759
title: Heterogenous Effects in Diabetes Mellitus Clinical Trials and Implications for Physician Prescriptions

description: Medications often have different treatment effects for different individuals. For example, a drug might have higher treatment effects for older patients compared to younger patients, or a drug might work less well for patients with additional comorbidities. This project explores how these different treatment effects translate into physician’s prescribing decisions.

By the design of inclusion and exclusion criteria, and by patient selection, clinical trials enroll a subset of the overall population. However, evidence from clinical trials may be applied to broad patient populations. These populations may be healthier or sicker, younger or older, with more or fewer additional health conditions. What can our evidence from clinical trials tell us about optimal treatment decisions in the real world? We will explore heterogenous treatment effects within clinical trials and explore the implications for physicians’ real-world prescribing decisions in the context of medications for diabetes.

This project will (1) document characteristics of clinical trial participants compared with characteristics of the real-world population of patients that are prescribed diabetes medications. We will also (2) explore which types of patients have larger treatment effects than other groups. We will aggregate results from numerous clinical trials to be able to estimate treatment effects for specific subpopulations. Finally, we will (3) explore how well real-world prescribing decisions correspond to clinical trial treatment effects. For example, if a clinical trial finds that a certain drug works very well for younger patients, are more younger patients prescribed the drug in practice?

Our results will contribute to our understanding of how clinical trial results are interpreted and how clinical trials affect physician practice. We intend to publish our results in high-impact journals and present our work at academic conferences and medical institutions.
DOI: 10.5281/zenodo.7948918
title: psittacara_rubritorquis_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7948917
title: psittacara_rubritorquis_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.22773818
title: The Molecular Basis for Resistance of the ESKAPE bacterium <em>E. faecium</em> Penicillin Binding Protein PBP5 to β-lactam Antibiotics

description: Data for "The Molecular Basis for Resistance of the ESKAPE bacterium <em>E. faecium</em> Penicillin Binding Protein PBP5 to β-lactam Antibiotics'
DOI: 10.34740/kaggle/dsv/5717736
title: USGS Idaho Streamgages May 2023
DOI: 10.6084/m9.figshare.22773818.v1
title: The Molecular Basis for Resistance of the ESKAPE bacterium <em>E. faecium</em> Penicillin Binding Protein PBP5 to β-lactam Antibiotics

description: Data for "The Molecular Basis for Resistance of the ESKAPE bacterium <em>E. faecium</em> Penicillin Binding Protein PBP5 to β-lactam Antibiotics'
DOI: 10.34740/kaggle/dsv/5717759
title: USGS Illinois Streamgages May 2023
DOI: 10.25345/c5dn4058d
title: MassIVE MSV000091988 - Proteomic Analysis of Mouse Milk Fat Globules
title: Quantitative profile of the milk fat globule protein compositions of milk samples from lactating CD1 mice.
DOI: 10.34740/kaggle/dsv/5717775
title: USGS Indiana Streamgages May 2023
DOI: 10.13020/jwgn-4078
title: Experimental data of biofilm development experiments under fluctuating flow conditions taken and processed at SAFL in 2022 

description: This dataset consists of the Matlab codes, experimental data, and raw images of the biofilm development experiments under fluctuating flow conditions. They are all collected in the Saint Anthony Falls Laboratory at the University of Minnesota. The codes are used for processing the raw images to calculate the biofilm thickness and biofilm area coverage. The experimental data file contains the data after processing. The image file contains the raw images collected during the experiments using the Nikon confocal microscope.
description: The raw images folder contains the raw images collected using Nikon confocal microscope. The Matlab codes are used for processing these raw images to calculate the biofilm thickness and biofilm area coverage. The data folder contains the data after processing.
DOI: 10.34740/kaggle/dsv/5717795
title: USGS Kansas Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717820
title: USGS Kentucky Streamgages May 2023
DOI: 10.5281/zenodo.7948934
title: amazona_auropalliata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7948933
title: amazona_auropalliata_spades_01.fasta.gz

description: .
DOI: 10.34740/kaggle/dsv/5717850
title: USGS Louisiana Streamgages May 2023
DOI: 10.48324/dandi.000489/0.230518.1811
title: The impact of the second phase amplitude (% to the first phase) on the electroporation efficiency (measured as YP emission)

description: Cells were electroporated by a train of 5 unipolar 600 ns pulses (0 percent) or bipolar 600 + 600 ns pulses (25, 50, 75, 100 percent) at 1 Hz. 25, 50, 75, and 100% represent the second pulse's amplitude in relation to the first pulse's amplitude. 0% represents a unipolar pulse, where no second pulse was applied. The electrodes were two parallel stainless-steel cylinders, 1.5 mm in diameter and 3 mm apart. Supported by NIH 1R21EY034258
DOI: 10.15139/s3/bhzips
title: A*CENSUS II Archives Administrators Survey, 2022

description: The second comprehensive Archival Census and Education Needs Survey in the United States (A*CENSUS II) was funded by a grant from the Institute of Museum and Library Services. Working with research firm ITHAKA S+R, SAA surveyed the directors of archival organizations to gather data about institutional characteristics; resources; strategic directions; and equity, inclusion, diversity, and access issues.
DOI: 10.6084/m9.figshare.20992177
title: Data for: Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments

description: All raw and derived data used to produce the results detailed in the article "Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments" published in <em>Ecological Applications </em>(2023). File and variable descriptions are provided in the metadata file.
DOI: 10.6084/m9.figshare.20992177.v2
title: Data for: Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments

description: All raw and derived data used to produce the results detailed in the article "Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments" published in <em>Ecological Applications </em>(2023). File and variable descriptions are provided in the metadata file.
DOI: 10.6084/m9.figshare.20992177.v1
title: Data for: Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments

description: All raw and derived data used to produce the results published in the article "Traits-mediated responses of caterpillar communities to spongy moth outbreaks and subsequent tebufenozide treatments" published in <em>Ecological Applications </em>(2023). File and variable descriptions are provided in the metadata file.
DOI: 10.34740/kaggle/dsv/5717866
title: USGS Massachusetts Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717886
title: USGS Maryland Streamgages May 2023
DOI: 10.57745/lwlb8b
title: README.txt

description: :unav
DOI: 10.57745/rfvdey
title: APMS_CP204L_coIP.txt

description: :unav
DOI: 10.57745/p6aois
title: APMS_VPS39_KO_ASFV_infected_8_24_48h.txt

description: :unav
DOI: 10.57745/rspbtv
title: proteinGroups_column_headers.docx

description: :unav
DOI: 10.57745/tzfdrc
title: APMS_VPS39_KO_validation.txt

description: :unav
DOI: 10.34740/kaggle/dsv/5717902
title: USGS Maine Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717913
title: USGS Michigan Streamgages May 2023
DOI: 10.5281/zenodo.7948994
title: psittacula_longicauda_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.7948993
title: psittacula_longicauda_spades_01.fasta.gz

description: .
DOI: 10.6084/m9.figshare.22888097
title: Realistic Digital City Dataset (Full Version)

description: RDCD consists of high-resolution RGB images and corresponding ground-truth depth images in 12 adverse disturbances.
DOI: 10.34740/kaggle/dsv/5717956
title: USGS Minnesota Streamgages May 2023
DOI: 10.15468/wwn8cw
title: Ilava ni Navakavu: a checklist of scientific and local names of the finfishes of the Vanua Navakavu, Fiji

description: This dataset is dedicated to the late Mr. Asakaia Balawa who was a marine conservation champion and custodian of indigenous Fijian environmental and cultural knowledge. This checklist records the indigenous names in the Navakavu dialect for various types of finfish (ilava), including true finfishes, sharks, rays, and eels. It pertains to the customary fishing grounds (iqoliqoli) and lands (vanua) of the people of Vanua Navakavu, situated on the Muaivusu Peninsula, east of Suva, the capital city of Fiji, in southeastern Viti Levu. Although the main focus is on marine species, information has been also included on brackish and freshwater species. The list of species is derived from a 2008 Technical Report published by the Coral Reefs Initiative for the Pacific (Initiatives Corail pour le Pacifique, CRISP), authored by the same individuals. For the purpose of this checklist, all scientific names extracted from the Technical Report were verified against the World Register of Marine Species database (www.marinespecies.org); specifically using the SiB-Colombia Open Refine Scripts for Biodiversity Data Quality script for Taxonomic Validation with WORMS's API (Marine data), that is available on GitHub. Species names that were found to be synonyms have been recorded using their valid names as of May 2023. The purpose of this list is to preserve the traditional knowledge held by the people of Vanua Navakavu concerning their marine resources.
DOI: 10.34740/kaggle/dsv/5717981
title: USGS Missouri Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5717997
title: USGS Mississippi Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5718009
title: USGS Montana Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5718019
title: USGS North Carolina Streamgages May 2023
DOI: 10.6084/m9.figshare.22788422.v1
title: Supplementary Files

description: Supplementary information files for the flux stations and meteorological stations.
DOI: 10.5281/zenodo.7949040
title: Phylomitogenomics reveals mito-nuclear concordance in social wasps: the performance of mitochondrial markers and gene order for hymenopteran systematics.

description: Mitochondrial (mtDNA) genes have served as widely utilized genetic loci for animal phylogenetics and phylogeography studies. However, the phylogenetic performance of many mtDNA genes has not been empirically evaluated across lineages within hymenopteran wasps. To address this question, we assembled and analyzed mitogenomic data from social wasps, representing the four recognized tribes of Polistinae and also all Epiponini genera. Additionally, we evaluated whether mtDNA gene order in Polistinae is congruent with its tribal classification. Using concatenation phylogenetic methods, we show phylogenetic congruence between mitogenomic and nuclear data. Statistically comparing the phylogenetic performance of individual mtDNA genes, we demonstrate that for social wasps the molecular markers COI, 16S, NAD5, and NAD2 perform best, while ATP6, COII, and 12S show the worst results. Finally, we verified that the tRNA cluster close to the noncoding region is a hotspot of rearrangement in Vespidae and can be used as additional information for the systematics of this group. Together, these results indicate that mitogenomes contain robust phylogenetic signal to elucidate the evolutionary history of Vespidae. Moreover, our study identifies the best choice of mitochondrial markers for systematic investigations of social wasps.
description: All alignments produced by this study are included here.
DOI: 10.5281/zenodo.7949039
title: Phylomitogenomics reveals mito-nuclear concordance in social wasps: the performance of mitochondrial markers and gene order for hymenopteran systematics.

description: Mitochondrial (mtDNA) genes have served as widely utilized genetic loci for animal phylogenetics and phylogeography studies. However, the phylogenetic performance of many mtDNA genes has not been empirically evaluated across lineages within hymenopteran wasps. To address this question, we assembled and analyzed mitogenomic data from social wasps, representing the four recognized tribes of Polistinae and also all Epiponini genera. Additionally, we evaluated whether mtDNA gene order in Polistinae is congruent with its tribal classification. Using concatenation phylogenetic methods, we show phylogenetic congruence between mitogenomic and nuclear data. Statistically comparing the phylogenetic performance of individual mtDNA genes, we demonstrate that for social wasps the molecular markers COI, 16S, NAD5, and NAD2 perform best, while ATP6, COII, and 12S show the worst results. Finally, we verified that the tRNA cluster close to the noncoding region is a hotspot of rearrangement in Vespidae and can be used as additional information for the systematics of this group. Together, these results indicate that mitogenomes contain robust phylogenetic signal to elucidate the evolutionary history of Vespidae. Moreover, our study identifies the best choice of mitochondrial markers for systematic investigations of social wasps.
description: All alignments produced by this study are included here.
DOI: 10.34740/kaggle/dsv/5718035
title: USGS North Dakota Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5718011
title: Visual Prosthesis: Faces, Text and Scenes
DOI: 10.34740/kaggle/dsv/5718055
title: USGS Nebraska Streamgages May 2023
DOI: 10.34740/kaggle/dsv/5718120
title: USGS New Hampshire Streamgages May 2023
DOI: 10.3886/icpsr38820.v1
title: Annual Survey of Jails in Indian Country, 2022
title: Version 1

description: The purpose of the Survey of Jails in Indian Country is an enumeration of all known adult and juvenile facilities -- jails, confinement facilities, detention centers, and other correctional facilities operated by tribal authorities or the Bureau of Indian Affairs (BIA), U.S. Department of the Interior. For the purpose of this collection, Indian country includes reservations, pueblos, rancherias, and other Native American and Alaska Native communities throughout the United States. The survey collects data on the number of adults and juveniles held on the last weekday in June 2022, type of offense, average daily population in June, most crowded day in June, admissions and releases in June, number of inmate deaths and suicide attempts from July 1, 2021 through June 30, 2022, rated capacity on June 30, and jail staffing on June 30, 2022.
description: None.
description: Datasets: DS0: Study-Level Files DS1: Public-Use Data DS2: Restricted-Use Data
description: Adult and juvenile facilities -- jails, confinement facilities, detention centers, and other correctional facilities in Indian country operated by tribal authorities or the Bureau of Indian Affairs (BIA), U.S. Department of the Interior in the United States in 2022. Smallest Geographic Unit: City
description: self-enumerated questionnaire; telephone interview