cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4726653
title: Pl@ntNet-300K image dataset

description: Pl@ntNet-300K is an image dataset aimed at evaluating set-valued classification. It was built from the database of Pl@ntnet citizen observatory and consists of 306146 images, covering 1081 species. We highlight two particular features of the dataset, inherent to the way the images are acquired and to the intrinsic diversity of plants morphology:<br> i) The dataset exhibits a strong class imbalance, meaning that a few species represent most of the images.<br> ii) Many species are visually similar, making identification difficult even for the expert eye.<br> These two characteristics make the present dataset a good candidate for the evaluation of set-valued classification methods and algorithms. Therefore, we recommend two set-valued evaluation metrics associated with the dataset (top-K and average-K) and we provide the results of a baseline approach based on a resnet50 trained with a cross-entropy loss. The full description of the dataset can be found in (to be provided soon). The scientific publication (NEURIPS 2022) describing the dataset and providing baseline results can be found here: https://openreview.net/forum?id=eLYinD0TtIt Utilities to load the data and train models with pytorch can be found here: https://github.com/plantnet/PlantNet-300K/
DOI: 10.5281/zenodo.5645731
title: Pl@ntNet-300K image dataset

description: This paper presents a novel image dataset with high intrinsic ambiguity and a long-tailed distribution built from the database of Pl@ntNet citizen observatory. It consists of 306146 plant images covering 1081 species. We highlight two particular features of the dataset, inherent to the way the images are acquired and to the intrinsic diversity of plants morphology: (i) the dataset has a strong class imbalance, i.e. a few species account for most of the images, and, (ii) many species are visually similar, rendering identification difficult even for the expert eye. These two characteristics make the present dataset well suited for the evaluation of set-valued classification methods and algorithms. Therefore, we recommend two set-valued evaluation metrics associated with the dataset (macro-average top-k accuracy and macro-average average-k accuracy) and we provide baseline results established by training deep neural networks using the cross-entropy loss. A full description of the dataset as well as baseline experiments can be found in the following publication: "Pl@ntNet-300K: a plant image dataset with high label ambiguity and a long-tailed distribution", Camille Garcin, Alexis Joly, Pierre Bonnet, Antoine Affouard, Jean-Christophe Lombardo, Mathias Chouet, Maximilien Servajean, Titouan Lorieul and Joseph Salmon, in Proc. of Thirty-fifth Conference on Neural Information Processing Systems, Datasets and Benchmarks Track, 2021. Please cite the above reference for any publication using the dataset. Utilities to load the data and train models with pytorch can be found here: https://github.com/plantnet/PlantNet-300K/
DOI: 10.5255/ukda-sn-855604
title: Multi-metric Evaluation of the Effectiveness of Remote Learning in Mechanical and Industrial Engineering During the COVID-19 Pandemic: Indicators and Guidance for Future Preparedness, 2021

description: This data set is a follow on study from a study on remote learning conducted in 2020 during the first year of the COVID-19 pandemic. It contains data collected from 5 universities in 5 countries about the effectiveness of e-learning during the COVID-19 pandemic in 2021, specifically tailored to mechanical and industrial engineering students. A survey was administered in August 2021 at these universities simultaneously, using Google Forms. The survey had 41 questions, including 24 questions on a 5-point Likert scale. The survey questions gathered data on their program of study, year of study, university of enrolment and mode of accessing their online learning content. The Likert scale questions on the survey gathered data on the effectiveness of digital delivery tools, student preferences for remote learning and the success of the digital delivery tools during the pandemic. All students enrolled in modules taught by the authors of this study were encouraged to fill the survey up. Additionally, remaining students in the departments associated with the authors were also encouraged to fill up the form through emails sent on mailing lists. The survey was also advertised on external websites such as survey circle and facebook. Crucial insights have been obtained after analysing this data set that link the student demographic profile (gender, program of study, year of study, university) to their preferences for remote learning and effectiveness of digital delivery tools. This data set can be used for further comparative studies and was useful to get a snapshot of the evolution of the student preferences and e-learning effectiveness during the COVID-19 pandemic from 2020 to 2021 by comparing with the dataset from 2020.
DOI: 10.6084/m9.figshare.14769048
title: Supplementary Tables and Figure Legends

description: Role of STAT3 in AKI-to-CKD.
DOI: 10.5281/zenodo.6367105
title: P_plus_E

description: Suplementary material for Vargas Godoy and Markonis 2022
DOI: 10.25919/nh1x-1804
title: Parkes observations for project P1032 semester 2021OCTS_10

description: This project aims to continue to perform rapid measurements of relativistic parameters of southern binary pulsar systems using data from the Parkes Ultra Wideband Low (UWL) receiver and the MeerKAT telescope thereby enabling measurement of their component masses and in some cases, test theories of gravity. We will use the UWL data to obtain significant orbital coverage and timing baseline on these pulsars and obtain important constraints on orbital and temporal DM variations that will help in identifying the nature of the companion star. We will then use MeerKAT data at crucial orbital phases to improve our chances of measuring the relativistic parameters. Increase in the number of measured NS masses has profound implications for NS internal structure and for stellar and binary evolution physics. From this semester, we are converting this proposal into a ``Large project" proposal.
DOI: 10.48370/ofd/lxdlcz/scs84c
title: Glischrochilus hortensis.jpg

description: :unav
DOI: 10.48370/ofd/lxdlcz
title: Glischrochilus hortensis (Fourcroy, 1785), C-549

description: Coleoptera collection
DOI: 10.5519/qd.lagy6gc9
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (11222 records)
DOI: 10.25405/data.ncl.19307591
title: Mapped geomorphological features and reconstructed glaciers within the Lagunas de las Huaringas, Peru

description: This dataset includes geomorphological features that were mapped within the Lagunas de las Huaringas, northern Peru using a combination of digital elevation models (DEMs) and remotely sensed optical imagery using well establish geomorphological mapping technique's. Also within is the subsequent glacier reconstructions that were informed by the geomorphological mapping, along with their reconstructed equilibrium line altitudes (ELAs) and glacial surface contours. For added context to the surrounding mapped features and reconstructed glaciers, basemap data is also included with 200 m elevational contours, height points and streams/rivers. <br>A break down of what is included can be found below:Geomorphological features: Alluvial fan Alluvial plain Bedrock step Boulders Cirque Glacial lineations Hill slope failures Hummocky terrain Moraines Moraine deposits Palaeo hill slope failures Pronounced moraine crests Rivers/streams Smoothed bedrock Steep bedrock slopes Waterbodies Glacier reconstructions: Reconstructed glacier outlines with metrics Reconstructed glacier ELAs Reconstructed glacier profile contours Basemap data: Streams/rivers 200 m contours Study regions Height points
DOI: 10.25405/data.ncl.19307591.v2
title: Mapped geomorphological features and reconstructed glaciers within the Lagunas de las Huaringas, Peru

description: This dataset includes geomorphological features that were mapped within the Lagunas de las Huaringas, northern Peru using a combination of digital elevation models (DEMs) and remotely sensed optical imagery using well establish geomorphological mapping technique's. Also within is the subsequent glacier reconstructions that were informed by the geomorphological mapping, along with their reconstructed equilibrium line altitudes (ELAs) and glacial surface contours. For added context to the surrounding mapped features and reconstructed glaciers, basemap data is also included with 200 m elevational contours, height points and streams/rivers. <br>A break down of what is included can be found below:Geomorphological features: Alluvial fan Alluvial plain Bedrock step Boulders Cirque Glacial lineations Hill slope failures Hummocky terrain Moraines Moraine deposits Palaeo hill slope failures Pronounced moraine crests Rivers/streams Smoothed bedrock Steep bedrock slopes Waterbodies Glacier reconstructions: Reconstructed glacier outlines with metrics Reconstructed glacier ELAs Reconstructed glacier profile contours Basemap data: Streams/rivers 200 m contours Study regions Height points
DOI: 10.25405/data.ncl.19307591.v1
title: Mapped geomorphological features and reconstructed glaciers within the Lagunas de las Huaringas, Peru

description: This dataset includes geomorphological features that were mapped within the Lagunas de las Huaringas, northern Peru using a combination of digital elevation models (DEMs) and remotely sensed optical imagery using well establish geomorphological mapping technique's. Also within is the subsequent glacier reconstructions that were informed by the geomorphological mapping, along with their reconstructed equilibrium line altitudes (ELAs) and glacial surface contours. For added context to the surrounding mapped features and reconstructed glaciers, basemap data is also included with 200 m elevational contours, height points and streams/rivers. <br>A break down of what is included can be found below:Geomorphological features: Alluvial fan Alluvial plain Bedrock step Boulders Cirque Glacial lineations Hill slope failures Hummocky terrain Moraines Moraine deposits Palaeo hill slope failures Pronounced moraine crests Rivers/streams Smoothed bedrock Steep bedrock slopes Waterbodies Glacier reconstructions: Reconstructed glacier outlines with metrics Reconstructed glacier ELAs Reconstructed glacier profile contours Basemap data: Streams/rivers 200 m contours Study regions Height points
DOI: 10.6084/m9.figshare.19382567
title: Datasheet_Characteristic_Lisa Adhia Garina.csv

description: Data sheet about characteristic (aged, gender, nutritional status, tonsil hypertrophy, asthma severity)
DOI: 10.25405/data.ncl.14125835
title: M.E. Jarvis et al. 2021: Tables

description: This data set contains machine-readable versions of the tables from M.E. Jarvis et al. 2021, MNRAS, 503, 1780 "The Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Available on the archive at: https://arxiv.org/abs/2103.00014<br>Specifically, Table 1, Table 2 and Table A1 are provided in fits format. The fits header contains a description of each column. The detailed information about the tables can be found in the original manuscript.
DOI: 10.25405/data.ncl.14125835.v1
title: M.E. Jarvis et al. 2021: Tables

description: This data set contains machine-readable versions of the tables from M.E. Jarvis et al. 2021, MNRAS, 503, 1780 "The Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Available on the archive at: https://arxiv.org/abs/2103.00014<br>Specifically, Table 1, Table 2 and Table A1 are provided in fits format. The fits header contains a description of each column. The detailed information about the tables can be found in the original manuscript.
DOI: 10.25405/data.ncl.13703581
title: M.E. Jarvis et al. 2021: Radio Spectral Index Maps

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br>This dataset contains all of the in-band spectral index maps (C-band; 4-8GHz) images for the 40 of the 42 quasars that were studied in this work and that have the necessary data (see paper for details). There is also an error map corresponding to each spectral index map.<br>The details of how these maps were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.25405/data.ncl.13703581.v1
title: M.E. Jarvis et al. 2021: Radio Spectral Index Maps

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br>This dataset contains all of the in-band spectral index maps (C-band; 4-8GHz) images for the 40 of the 42 quasars that were studied in this work and that have the necessary data (see paper for details). There is also an error map corresponding to each spectral index map.<br>The details of how these maps were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.25405/data.ncl.13702021
title: M.E. Jarvis et al. 2021 - C-band VLA images

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br>This dataset contains all of the C-band VLA images for the 42 quasars that were studied in this work.<br>The details of how these images were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.25405/data.ncl.13702021.v1
title: M.E. Jarvis et al. 2021 - C-band VLA images

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br>This dataset contains all of the C-band VLA images for the 42 quasars that were studied in this work.<br>The details of how these images were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.25405/data.ncl.13416164
title: M.E. Jarvis et al. 2021: L-band VLA images

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br><br>This dataset contains all of the L-band VLA images for the 42 quasars that were studied in this work. <br>The details of how these images were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.25405/data.ncl.13416164.v1
title: M.E. Jarvis et al. 2021: L-band VLA images

description: This data is associated with M.E. Jarvis et al. 2021, MNRAS, 503, 1780, "Quasar Feedback Survey: Discovering hidden Radio-AGN and their connection to the host galaxy ionised gas". Also available on the pre-print archive: arxiv.org/abs/2103.00014<br><br>This dataset contains all of the L-band VLA images for the 42 quasars that were studied in this work. <br>The details of how these images were created from the raw datasets are described in the paper. The file format and meta-data stored in the header follow the astronomical standard fits format.
DOI: 10.6084/m9.figshare.17197748.v1
title: HadAM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.17197748
title: HadAM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.17197748.v2
title: HadAM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.17182907
title: HadSM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.17182907.v2
title: HadSM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.17182907.v1
title: HadSM3 extra-tropical and tropical runs

description: All files are in NetCDF3 format, readable with nco or cdo.
DOI: 10.6084/m9.figshare.19096952
title: Supplementary Material for: Real-world effectiveness of piperacillin/tazobactam with and without linezolid for spontaneous bacterial peritonitis

description: Background: Guidelines recommend empiric therapy with piperacillin/tazobactam (TZP) for spontaneous bacterial peritonitis (SBP) with low risk of multidrug-resistant organisms. Whether coverage of beta-lactam-resistant Gram-positive bacteria, such as ampicillin-resistant Enterococcus faecium, provides clinical benefit in such situations is unknown. Methods: In this observational study, we investigated the real-world effectiveness of empirical therapy with TZP monotherapy versus TZP plus linezolid (LZD) combination therapy in patients with SBP from two centers. Treatment failure, defined as the need to escalate antibiotic therapy due to in vitro resistance, lack of neutrophil decrease in ascitic fluid, or clinical decision, and 30-day survival were retrospectively assessed. Results: In the first cohort, 100 SBP episodes were empirically treated with TZP+LZD combination therapy (n=50) or PTZ monotherapy (n=50). Treatment failure was recorded in 48% with TZP monotherapy compared with 16% with TZP+LZD combination therapy (P=0.001), and this difference persisted after stratification for community-acquired versus hospital-acquired SBP. Although treatment failure after TZP therapy was associated with lower 30-day survival (56% vs 82%; P=0.04), 30-day survival with empirical TZP+LZD combination therapy was not different from empirical TZP monotherapy (Kaplan-Meier estimates 74% vs 69%; P=0.87). TZP concentrations in ascitic fluid were &gt;32 mg/l in 94% samples after continuous administration. In a second cohort of 41 patients empirically treated with TZP, treatment failure was observed in 37%, which was also higher than in episodes treated with TZP+LZD in cohort 1 (P=0.03). Conclusion: In this retrospective analysis, empirical TZP+LZD combination therapy for SBP was associated with fewer treatment failures without impact on short-term survival.
DOI: 10.6084/m9.figshare.19096952.v1
title: Supplementary Material for: Real-world effectiveness of piperacillin/tazobactam with and without linezolid for spontaneous bacterial peritonitis

description: Background: Guidelines recommend empiric therapy with piperacillin/tazobactam (TZP) for spontaneous bacterial peritonitis (SBP) with low risk of multidrug-resistant organisms. Whether coverage of beta-lactam-resistant Gram-positive bacteria, such as ampicillin-resistant Enterococcus faecium, provides clinical benefit in such situations is unknown. Methods: In this observational study, we investigated the real-world effectiveness of empirical therapy with TZP monotherapy versus TZP plus linezolid (LZD) combination therapy in patients with SBP from two centers. Treatment failure, defined as the need to escalate antibiotic therapy due to in vitro resistance, lack of neutrophil decrease in ascitic fluid, or clinical decision, and 30-day survival were retrospectively assessed. Results: In the first cohort, 100 SBP episodes were empirically treated with TZP+LZD combination therapy (n=50) or PTZ monotherapy (n=50). Treatment failure was recorded in 48% with TZP monotherapy compared with 16% with TZP+LZD combination therapy (P=0.001), and this difference persisted after stratification for community-acquired versus hospital-acquired SBP. Although treatment failure after TZP therapy was associated with lower 30-day survival (56% vs 82%; P=0.04), 30-day survival with empirical TZP+LZD combination therapy was not different from empirical TZP monotherapy (Kaplan-Meier estimates 74% vs 69%; P=0.87). TZP concentrations in ascitic fluid were &gt;32 mg/l in 94% samples after continuous administration. In a second cohort of 41 patients empirically treated with TZP, treatment failure was observed in 37%, which was also higher than in episodes treated with TZP+LZD in cohort 1 (P=0.03). Conclusion: In this retrospective analysis, empirical TZP+LZD combination therapy for SBP was associated with fewer treatment failures without impact on short-term survival.
DOI: 10.6084/m9.figshare.19382603
title: DEG tables

description: Lists of differentially expressed genes for the drought main effect and for each genotype.<br>For the R code please see: https://doi.org/10.6084/m9.figshare.19382594.v1<br>
DOI: 10.6084/m9.figshare.19382621
title: Datasheet lung function and asthma severity_Lisa Adhia Garina

description: Data sheet lung function and asthma severity of research subject
DOI: 10.6084/m9.figshare.19382621.v1
title: Data sheet lung function and asthma severity_Lisa Adhia Garina

description: Data sheet lung function and asthma severity of research subject
DOI: 10.6084/m9.figshare.17031842.v2
title: FigShare Raw Count Table.xlsx

description: Raw Count Table: Table containing the raw counts for the samples gxd001 - gxd072. Samples names are always: gxd-id_tissue_genotype_treatment. for example: gxd001__tissue_fr_control rt: fine roots dx: developing xylem lf: leaf sp: spain it: italy fr: france
DOI: 10.6084/m9.figshare.19382708
title: Supplementary Material for: Propofol Disrupts Clear Cell Renal Cell Carcinoma Tumorigenesis by Regulating circFBXW7/miR-942 Axis

description: <b><i>Background:</i></b> Propofol is a commonly used intravenous anesthetic and has been found to perform anticancer effects in many cancers. However, the effects and mechanisms of propofol in clear cell renal cell carcinoma (ccRCC) remain largely undefined. <b><i>Methods:</i></b> The expression of circular RNA FBXW7 (circFBXW7) and miR-942 was detected by qRT-PCR. Cell proliferation, apoptosis, migration, and invasion capacities were analyzed using cell counting kit-8, colony formation, flow cytometry, and transwell assays, respectively. Western blot was used to detect the expression levels of PCNA, Cleaved-caspase 3 and MMP protein. The bindings between miR-942 and circFBXW7 were verified using RNA pull-down, dual-luciferase reporter, and RIP assays. Xenograft tumor analysis was employed to detect tumorigenesis in vivo. <b><i>Results:</i></b> Propofol alleviated cell proliferation, migration, invasion, and induced apoptosis in vitro and impeded tumor growth in vivo in ccRCC. Propofol elevated the level of circFBXW7, which knockdown reversed the anticancer effects of propofol on ccRCC cell tumorigenesis. CircFBXW7 directly bound to miR-942, and suppressed ccRCC cell malignant biological behaviors via targeting miR-942. Besides that, propofol decreased miR-942 expression, and miR-942 overexpression attenuated the effects of propofol on ccRCC cells. Moreover, propofol could regulate miR-942 expression through circFBXW7. <b><i>Conclusion:</i></b> Propofol suppressed the growth, migration, and invasion of ccRCC cells by regulating circFBXW7/miR-942 axis, suggesting a potential therapeutic strategy for the intervention of human ccRCC development.
DOI: 10.5281/zenodo.6367301
title: data for my test

description: This is a test data