cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.17011541
title: Supplementary Material for: Non-Invasive Follicular Thyroid Neoplasm with Papillary-Like Nuclear Features Is Not a Cytological Diagnosis, but It Influences Cytological Diagnosis Outcomes: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> A low-risk thyroid tumour, non-invasive follicular thyroid neoplasm with papillary-like nuclear features (NIFTP) was introduced in 2016. NIFTP criteria require a thorough histological examination to rule out capsular and lymphovascular invasion, which denies the possibility of preoperative cytological diagnosis. Nevertheless, since the adoption of the new entity, the cytology of NIFTP has been a subject of interest. <b><i>Objectives:</i></b> The present systematic review and meta-analysis investigate the cytological diagnosis of NIFTP. <b><i>Method:</i></b> An online PubMed literature search was conducted between March 1, 2020, and June 30, 2020, for all original articles considering the cytology of histologically proven NIFTP. The studies including data on fine needle aspiration specimens classified by The Bethesda System for Reporting Thyroid Cytology (TBSRTC) categories, risk of malignancy (ROMs) in the TBSRTC categories, and cytomorphological features of NIFTP were included in the meta-analysis. Non-English studies and case reports were excluded. The data were tabulated and statistical analysis was performed with Open Meta-Analyst program. <b><i>Results:</i></b> Fifty-eight studies with a total of 2,553 NIFTP cases were included in the study. The pooled prevalence of NIFTP cases was calculated among 25,892 surgically resected cases from 20 studies and the results show that NIFTP consisted 4.4% (95% confidence interval [CI]: 3.5–5.4%) of all cases. Most of the NIFTP cases (79.0%) belonged to the intermediate categories of TBSRTC. The pooled distribution of NIFTP cases in each TBSRTC category was 1.3% (95% CI: 0.8–1.7%) in non-diagnostic (ND), 8.9% (95% CI: 6.9–10.8%) in benign, 29.2% (95% CI: 25.0–33.4%) in atypia of undetermined significance or follicular lesion of undetermined significance (AUS/FLUS), 24.2% (95% CI: 19.6–28.9%) in follicular neoplasm (FN), 19.5% (95% CI: 16.1–22.9%) in suspicious for malignancy (SM), and 6.9% (95% CI: 5.2–8.7%) in malignant. Compared to pre-NIFTP era, the pooled risk differences of ROM were reduced by 2.4% in ND, 2.7% in benign, 8.2% in AUS/FLUS, 8.2% in FN, 7.3% in SM, and 1.1% in the malignant category. The cytomorphological features of NIFTP were similar to follicular variant of papillary thyroid carcinoma (FVPTC) but lesser to papillary thyroid carcinoma (PTC). <b><i>Conclusions:</i></b> Based on our results, NIFTP remains a histological diagnosis. Although cytomorphological features cannot be used in differentiating NIFTP from FVPTC, they may guide in separating NIFTP from PTC. Features such as papillae, microfollicles, giant cells, psammoma bodies, and the amount of papillary-like nuclear features should be taken into account when suspicious of NIFTP. NIFTP should not have papillae or psammoma bodies, and giant cells were rarely observed.
DOI: 10.6084/m9.figshare.17011553
title: Supplementary Material for: BAP1 Immunostain Status in Intraocular Biopsy Specimens for Uveal Melanoma Highly Correlates with Other Prognostic Markers

description: <b><i>Introduction:</i></b> Loss of BAP1 protein expression emerged as a negative prognostic marker in uveal melanoma (UM) and has primarily been studied in enucleations. Intraocular biopsy is frequently performed prior to UM globe-conserving therapy. <b><i>Methods:</i></b> We retrospectively evaluated BAP1 immunostaining of UM in 16 biopsies and 8 subsequent enucleations, and results were correlated with the UM-specific gene expression profile (GEP; <i>n</i> = 11), chromosome 3 status by FISH and/or chromosomal microarray (<i>n</i> = 12; 9 also had GEP), and clinical outcomes. <b><i>Results:</i></b> UM involved the choroid in 15 (of 16) cases. Biopsy was performed for prognostication (<i>n</i> = 12) or diagnosis (<i>n</i> = 4). Treatment included brachytherapy (<i>n</i> = 13; 5 followed by enucleation) or enucleation only (<i>n</i> = 3). BAP1 nuclear immunostaining was positive in 9, negative in 4, and equivocal in 3 biopsies. For the 3 equivocal biopsies, BAP1 immunostaining was positive in 2 (of 3) subsequent enucleations. BAP1 immunostaining was concordant between all 5 remaining biopsies and enucleations. BAP1-positive biopsies had disomy 3 (<i>n</i> = 6) or 3p loss (<i>n</i> = 1) and class 1 GEP (<i>n</i> = 6). BAP1-negative biopsies had monosomy 3 (<i>n</i> = 3) and class 2 GEP (<i>n</i> = 2). Median follow-up was 62.5 months (range, 17–150). For BAP1-positive UM patients, 8 were alive (7 without metastatic disease) and 3 had died (1 melanoma-related death). Among BAP1-negative UM patients, 2 were alive (1 with metastatic disease) and 3 had melanoma-related deaths. <b><i>Conclusion:</i></b> BAP1 immunostaining in biopsies highly correlates with results in subsequent enucleations and with well-established UM prognostic markers, representing a potential additional prognostic tool for UM biopsies.
DOI: 10.5517/ccdc.csd.cc28rsrl
title: CCDC 2108240: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rssm
title: CCDC 2108241: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rstn
title: CCDC 2108242: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rsvp
title: CCDC 2108243: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rswq
title: CCDC 2108244: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rsxr
title: CCDC 2108245: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rsys
title: CCDC 2108246: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rszt
title: CCDC 2108247: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rt0w
title: CCDC 2108248: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc28rt1x
title: CCDC 2108249: Experimental Crystal Structure Determination

description: Related Article: Jeonghyo Lee, Bora Kang, Dongwook Kim, Jia Lee, Sukbok Chang|2021|J.Am.Chem.Soc.|143|18406|doi:10.1021/jacs.1c10138
DOI: 10.5517/ccdc.csd.cc27zngc
title: CCDC 2085043: Experimental Crystal Structure Determination

description: Related Article: Derya Davarcı, Nurcan Doğan, İlker Cabac, Yunus Zorlu|2022|Polyhedron|211|115557|doi:10.1016/j.poly.2021.115557
DOI: 10.5517/ccdc.csd.cc26m2b8
title: CCDC 2044119: Experimental Crystal Structure Determination

description: Related Article: Xu-Yan Li, Guo-Yu Yang|2021|Inorg.Chem.|60|16085|doi:10.1021/acs.inorgchem.1c02784
DOI: 10.5517/ccdc.csd.cc28lz62
title: CCDC 2103604: Experimental Crystal Structure Determination

description: Related Article: Jun Fan, Ming-Chung Yang, Ming-Der Su, Cheuk-Wai So|2021|Inorg.Chem.|60|16065|doi:10.1021/acs.inorgchem.1c02541
DOI: 10.5517/ccdc.csd.cc28zc3r
title: CCDC 2114544: Experimental Crystal Structure Determination

description: Related Article: Yong-Fang Han, Ning-Ning Zhang, Li Li, Liu-Di Xin, Kong-Gang Qu|2021|Dyes Pigm.|197|109917|doi:10.1016/j.dyepig.2021.109917
DOI: 10.5517/ccdc.csd.cc28zfh6
title: CCDC 2114618: Experimental Crystal Structure Determination

description: Related Article: Xin-Yu Liu, Shi-Yin Tian, Yi-Fan Jiang, Weidong Rao, Shun-Yi Wang|2021|Org.Lett.|23|8246|doi:10.1021/acs.orglett.1c02981
DOI: 10.6084/m9.figshare.17011712
title: 110.xlsx

description: The caliper based on confocal dispersion sensor measures the point cloud coordinates of 110mm, 125mm and 150mm ring gauge
DOI: 10.6084/m9.figshare.17011712.v1
title: 110.xlsx

description: The caliper based on confocal dispersion sensor measures the point cloud coordinates of 110mm, 125mm and 150mm ring gauge
DOI: 10.15151/esrf-es-541101382
title: Structural biology at Umeå University

description: The BAG consists out of 7 groups that are heavily involved in macromolecular crystallography, as well as other structural biology techniques, at Umeå University, Sweden. We work on a diverse set of biological questions, ranging from understanding the structure and function of Gram-positive Type 4 Secretion Systems, mobile genetic elements in Staphylococcus aureus, DNA and RNA polymerases, effector protein in Type 6 Secretion Systems and transcriptional regulators.
DOI: 10.15151/esrf-es-618299517
title: Lithium grain fine study

description: Lithium metal negative electrodes are very promising in term of specific energy but suffer from poorly controlled plating and heterogeneity growth. The mechanisms that subtend this heterogeneity formation, nucleation, evolution, and the critical conditions for which it occurs are still not clear. The aim of this session is to validate the preliminary design of cells for deeper comprehension of the grain lithium behaviour during plating experiments.
DOI: 10.15151/esrf-es-562896665
title: Fast scanning SAXS of hydrated biological cells

description: We have recently employed hard X-ray scanning SAXS in a special fast scanning mode at ID13 to image hundreds of freeze-dried mouse embryonic fibroblasts (MEFs) in a single scan. The MEFs were used as a suitable model cell system to study the influence of different cytoskeletal proteins on cell structure and mechanics. In the proposed experiment, we suggest to get closer to physiological conditions, by applying the method to hydrated cells. We will fabricate special fluid chambers and investigate MEFs expressing either healthy wild type desmin or a disease mutant of desmin (R406W) which leads to protein aggregates in the cells. These aggregates are possibly related to severe muscle diseases and a thorough understanding of their nanoscale structure is of great importance.
DOI: 10.15151/esrf-es-565653577
title: Determination of Crystal structure and local anti-site disorder of Co doped Ni-Mn-Sn shape memory alloy using powder X-ray diffraction and X

description: In this work we will investigate the crystal structure and anti-site disorder of Ni49-xCoxMn38Sn13 (x=0,2,4,6) and Ni49-xMn38-xCoxSn13 (x=0,2,4,6) as a function of temperature in both austenite and martensitic phases. In this work we want to perform temperature dependent high-resolution diffraction at ID22 beamline and XAFS at ID26 beamline. The high-resolution diffraction will be used to provide well resolved superstructure peaks in the modulated martensitic phases enabling atomic positions and space group of the martensitic structures to be determined. At the same time temperature dependent XAFS will find local anti-site bond distance and disorder to understand local distortion in the present of austenite and martensitic phases, which will help to know the magnetic transition, favouring a high magneto-caloric effect.
DOI: 10.6084/m9.figshare.17009987
title: image.mat

description: In this dataset, Moderate Resolution Imaging Spectroradiometer (MODIS) normalized difference vegetation index (NDVI) data were used to construct a time spectrum, and a method of temporal spectrum endmember extraction and mixed pixel decomposition was proposed to achieve rapid and accurate extraction of multiple crops simultaneously across a large area.
DOI: 10.6084/m9.figshare.17009987.v1
title: image.mat

description: In this dataset, Moderate Resolution Imaging Spectroradiometer (MODIS) normalized difference vegetation index (NDVI) data were used to construct a time spectrum, and a method of temporal spectrum endmember extraction and mixed pixel decomposition was proposed to achieve rapid and accurate extraction of multiple crops simultaneously across a large area.
DOI: 10.6084/m9.figshare.17009831.v1
title: SCA1B-201910-202012.zip

description: The GRACE-FO SCA1B data product is obtained by combining the SCA1A data and IMU1A data through the Kalman filter. The date of the solution is 2018.06-2020.12.
DOI: 10.5281/zenodo.5701846
title: Vancomycin-resistant enterococci and coagulase-negative staphylococci prevalence among patients attending at Felege Hiwot Comprehensive Specialized Hospital, Bahir Dar, Ethiopia

description: Background<br> Vancomycin resistant enterococci (VRE) and vancomycin resistance coagulase negative<br> staphylococci (VRCoNS) are common pathogens causing difficult to treat health care associated infections (HAI). Hence, the World Health Organization listed VRE as one of the high<br> priority pathogens for new antibiotic discovery and antimicrobial resistance surveillance.<br> Despite this, data on the prevalence of VRE and VRCoNS in Ethiopia is scarce. Thus, the<br> present study determined prevalence of VRE and VRCoNS among patients attending<br> Felege-Hiwot comprehensive specialized hospital, Ethiopia.<br>
description: Staphylococci,Antimicrobial resistance
DOI: 10.5281/zenodo.5701845
title: Vancomycin-resistant enterococci and coagulase-negative staphylococci prevalence among patients attending at Felege Hiwot Comprehensive Specialized Hospital, Bahir Dar, Ethiopia

description: Background<br> Vancomycin resistant enterococci (VRE) and vancomycin resistance coagulase negative<br> staphylococci (VRCoNS) are common pathogens causing difficult to treat health care associated infections (HAI). Hence, the World Health Organization listed VRE as one of the high<br> priority pathogens for new antibiotic discovery and antimicrobial resistance surveillance.<br> Despite this, data on the prevalence of VRE and VRCoNS in Ethiopia is scarce. Thus, the<br> present study determined prevalence of VRE and VRCoNS among patients attending<br> Felege-Hiwot comprehensive specialized hospital, Ethiopia.<br>
description: Staphylococci,Antimicrobial resistance
DOI: 10.3886/e120321v11-101600
title: COVID-19 Twitter Dataset with Latent Topics, Sentiments and Emotions Attributes

description: This project aims to present a large dataset for researchers to discover public conversation on Twitter surrounding the COVID-19 pandemic. From 28 January 2020 to 1 September 2021, we collected over 198 million Twitter posts from more than 25 million unique users using four keywords: “corona”, “wuhan”, “nCov” and “covid”. Leveraging topic modeling techniques and pre-trained machine learning-based emotion analytic algorithms, we labeled each tweet with seventeen semantic attributes, including a) ten binary attributes indicating the tweet’s relevance or irrelevance to the top ten detected topics, b) five quantitative emotion attributes indicating the degree of intensity of the valence or sentiment (from 0: very negative to 1: very positive), and the degree of intensity of fear, anger, happiness and sadness emotions (from 0: not at all to 1: extremely intense), and c) two qualitative attributes indicating the sentiment category (very negative, negative, neutral or mixed, positive, very positive) and the dominant emotion category (fear, anger, happiness, sadness, no specific emotion) the tweet is mainly expressing.
description: Twitter posts.
description: The latest version has data updated up to 1 Sep 2021, including additional csv downloads for 29 countries)
DOI: 10.6084/m9.figshare.12908367
title: Effects of Grazing in a Sown Pasture with Forestland on the Health of Japanese Black Cows as Evaluated by Multiple Indicators

description: The objective of the present study was to evaluate the effects of extensive grazingin a sown pasture with forestland on the health of beef cows by measuring multiple indicators. Ten Japanese Black beef cows were used in this experiment. Five of the ten cows were grazed for two months on a 1.8 ha field. The remaining cows were fed under confinement conditions. Behavioral assessments showed that grazing increased sternum lying with rumination of the cows. The grazing cows did not show any abnormal behaviors. There was a tendency for the numbers of red blood cells and lymphocytes to be lower in grazing cows than in confined cows, whereas the number of neutrophils in grazing cows was significantly higher than that in confined cows. In addition, grazing cows had a higher total antioxidant capacity and glutathione peroxidase activity than confined cows. These results suggest that extensive grazing in a sown pasture with forestland increases natural behaviors, decreases circulating red blood cells and lymphocytes and enhances neutrophil circulation, antioxidant enzyme activity, and antioxidant capacity.
DOI: 10.6084/m9.figshare.12908367.v1
title: Effects of Grazing in a Sown Pasture with Forestland on the Health of Japanese Black Cows as Evaluated by Multiple Indicators

description: The objective of the present study was to evaluate the effects of extensive grazingin a sown pasture with forestland on the health of beef cows by measuring multiple indicators. Ten Japanese Black beef cows were used in this experiment. Five of the ten cows were grazed for two months on a 1.8 ha field. The remaining cows were fed under confinement conditions. Behavioral assessments showed that grazing increased sternum lying with rumination of the cows. The grazing cows did not show any abnormal behaviors. There was a tendency for the numbers of red blood cells and lymphocytes to be lower in grazing cows than in confined cows, whereas the number of neutrophils in grazing cows was significantly higher than that in confined cows. In addition, grazing cows had a higher total antioxidant capacity and glutathione peroxidase activity than confined cows. These results suggest that extensive grazing in a sown pasture with forestland increases natural behaviors, decreases circulating red blood cells and lymphocytes and enhances neutrophil circulation, antioxidant enzyme activity, and antioxidant capacity.
DOI: 10.6084/m9.figshare.15564210
title: Emotional Intelligence Systematic Review

description: Emotional Intelligence (EI) is especially important for medical undergraduates due to the long undergraduate period and relatively high demands of the medical course. Determining associates of EI would not only enable identification of those who are most suited for the discipline of medicine but would also help in designing training strategies to target specific groups. However, there is diversity of opinion regarding the associates of EI in medical students.
DOI: 10.6084/m9.figshare.15564210.v4
title: Emotional Intelligence Systematic Review

description: Emotional Intelligence (EI) is especially important for medical undergraduates due to the long undergraduate period and relatively high demands of the medical course. Determining associates of EI would not only enable identification of those who are most suited for the discipline of medicine but would also help in designing training strategies to target specific groups. However, there is diversity of opinion regarding the associates of EI in medical students.
DOI: 10.6084/m9.figshare.15564210.v3
title: Emotional Intelligence Systematic Review

description: Emotional Intelligence (EI) is especially important for medical undergraduates due to the long undergraduate period and relatively high demands of the medical course. Determining associates of EI would not only enable identification of those who are most suited for the discipline of medicine but would also help in designing training strategies to target specific groups. However, there is diversity of opinion regarding the associates of EI in medical students.
DOI: 10.15468/g6fefz
title: Two new species of Amphinemurinae (Plecoptera; Nemouridae) from Yunnan Province, China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rehman, Abdur, Zhao, Meng-Yuan, Du, Yu-Zhou (2021): Two new species of Amphinemurinae (Plecoptera; Nemouridae) from Yunnan Province, China. Zootaxa 5068 (1): 115-124, DOI: https://doi.org/10.11646/zootaxa.5068.1.5
DOI: 10.6084/m9.figshare.14378981.v3
title: Ozone and crop yield

description: the global impact of atmospheric O<sub>3</sub> on major crops (wheat, maize, rice, and soybean) production based on:global ozone fumigation experimentsglobal ozone monitoring stationsglobal crop acreage global crop production<br>
DOI: 10.34760/61921685cf3ac
title: Test november 2021
DOI: 10.5281/zenodo.5701966
title: Dataset of "Shock recovery with decaying compressive pulses: A shock effect in calcite (CaCO3) around the Hugoniot elastic limit"

description: The text data supporting the figures on the manuscript. The names of variables are listed on the top column.
description: The manuscript has been submitted to Journal of Geophysical Research Planets.
DOI: 10.5281/zenodo.5701965
title: Dataset of "Shock recovery with decaying compressive pulses: A shock effect in calcite (CaCO3) around the Hugoniot elastic limit"

description: The text data supporting the figures on the manuscript. The names of variables are listed on the top column.
description: The manuscript has been submitted to Journal of Geophysical Research Planets.
DOI: 10.6084/m9.figshare.17008922
title: population genomics of cotton bollworm

description: population genomics of cotton bollworm
DOI: 10.25721/73e7-mg68
title: Spécimen phonétique  les mois de l'année
DOI: 10.25721/84c5-ds44
title: Spécimen phonétique  les mois de l'année
DOI: 10.5281/zenodo.5361309
title: Prider testing data and code, Biorxiv

description: The FASTA file sets and the R script used for the testing of the processing time of R package Prider.
DOI: 10.5281/zenodo.5361308
title: Prider testing data and code, Biorxiv

description: The FASTA file sets and the R script used for the testing of the processing time of R package Prider.
DOI: 10.25721/jayy-qd68
title: Comptine et incantation au sifflet, formulette
DOI: 10.25721/nngk-jt94
title: Comptine et incantation au sifflet, formulette
DOI: 10.25721/fdw7-0k81
title: "Dans le paradis terrestre", chanson biblique
DOI: 10.25721/fy0e-yy36
title: "Dans le paradis terrestre", chanson biblique
DOI: 10.5281/zenodo.5702125
title: Vehicular traffic count measurements at Tampere City, Finland, Updated version

description: Inductive loop vehicular traffic count measurements from Tampere City, Finland 15-minute resolution, 2 locations, 2011-2014 Data utilized in "Origin-destination matrix estimation with a conditionally binomial model" by P.Kuusela, I. Norros, J. Kilpi and T. Räty See VehicularTrafficCountMeasurements_TampereFinland_2011-2014.rtf
description: File ctSantalahtiTampella.dat added and file ctTampellaSatakunnansilta.dat removed.
DOI: 10.5281/zenodo.2359338
title: Vehicular traffic count measurements at Tampere City, Finland, Updated version

description: Inductive loop vehicular traffic count measurements from Tampere City, Finland 15-minute resolution, 2 locations, 2011-2014 Data utilized in "Origin-destination matrix estimation with a conditionally binomial model" by P.Kuusela, I. Norros, J. Kilpi and T. Räty See VehicularTrafficCountMeasurements_TampereFinland_2011-2014.rtf
description: File ctSantalahtiTampella.dat added and file ctTampellaSatakunnansilta.dat removed.