cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3932098
title: Research data supporting "Expanding and Optimizing 3D Bioprinting Capabilities Using Complementary Network Bioinks"

description: Raw research data supporting: Ouyang L. et al., 2020, Science Advances, 6:eabc5529.
DOI: 10.6084/m9.figshare.3406810
title: <i>Galleria mellonella</i> as a model system to assess the efficacy of antimicrobial agents against <i>Klebsiella pneumoniae</i> infection

description: <i>Galleria mellonella</i> as a model system to assess the efficacy of antimicrobial agents against <i>Klebsiella pneumoniae</i> infection
DOI: 10.6084/m9.figshare.3406810.v1
title: <i>Galleria mellonella</i> as a model system to assess the efficacy of antimicrobial agents against <i>Klebsiella pneumoniae</i> infection

description: <i>Galleria mellonella</i> as a model system to assess the efficacy of antimicrobial agents against <i>Klebsiella pneumoniae</i> infection
DOI: 10.6084/m9.figshare.3406708
title: Large System Vesicle Benchmark Library

description: <b>Large benchmark systems for MDAnalysis (and other codes)</b><br><br><br>Coarse-grained (DryMartini force field) vesicle systems were generated with the scripts in the vesicle_library (https://github.com/Becksteinlab/vesicle_library) by Ian Kenney.<br><br>The files are placed into the Public Domain (made available under the CC0 license).<br><br>========= ============<br>directory # particles<br>========= ============<br> 1_75M 1748952<br> 3_5M 3497904<br> 10M 10074000<br>========= ============<br><br><br>For more background see<br><br>I. M. Kenney and O. Beckstein. <i>SPIDAL Summer REU 2015: Biomolecular benchmark systems</i>. Technical report, Arizona State University, Tempe, AZ, October 2015. http://doi.org/10.6084/m9.figshare.1588804.v1<br><br><br>
DOI: 10.15161/oar.it/30669
title: CovidStat project data

description: This record contains the daily updated data of the CovidStat project. CovidStat is a project carried out by the CovidStat Working Group at INFN, whose creation was promoted within the Italian National Institute of Nuclear Physics with the aim of making a statistical analysis of the data provided daily by the Civil Protection on the spread of the pandemic in Italy. CovidStat data can interactively be browsed at https://covid19.infn.it.
description: The software to process this Root TTree is in the related identifier. Be sure to use the right corresponding version, based on the data in which Root TTree was generated.
DOI: 10.6084/m9.figshare.3406663
title: State work engagement and state affect (2016): Dataset

description: Data to: Reis, D., Arndt, C., Lischetzke, T., & Hoppe, A. (2016). State work engagement and state affect: Similar yet distinct concepts. <i>Journal of Vocational Behavior, 93</i>, doi:10.1016/j.jvb.2015.12.004
DOI: 10.6084/m9.figshare.3406663.v2
title: State work engagement and state affect (2016): Dataset

description: Data to: Reis, D., Arndt, C., Lischetzke, T., & Hoppe, A. (2016). State work engagement and state affect: Similar yet distinct concepts. <i>Journal of Vocational Behavior, 93</i>, doi:10.1016/j.jvb.2015.12.004
DOI: 10.6084/m9.figshare.3406663.v1
title: Data to Reis et al., 2016

description: Data to: Reis, D., Arndt, C., Lischetzke, T., & Hoppe, A. (2016). State work engagement and state affect: Similar yet distinct concepts. <i>Journal of Vocational Behavior, 93</i>, doi:10.1016/j.jvb.2015.12.004
DOI: 10.6084/m9.figshare.3406660
title: Toll-like Receptor 2 Stimulation of Osteoblasts Mediates Staphylococcus Aureus Induced Bone Resorption and Osteoclastogenesis Through Enhanced RANKL

description: Ali Kassem et al.
DOI: 10.6084/m9.figshare.3406660.v2
title: Toll-like Receptor 2 Stimulation of Osteoblasts Mediates Staphylococcus Aureus Induced Bone Resorption and Osteoclastogenesis Through Enhanced RANKL

description: Ali Kassem et al.
DOI: 10.6084/m9.figshare.3406660.v1
title: Plos One Ali.JNB

description: Ali Kassem et al.
DOI: 10.6084/m9.figshare.3406654
title: Phylogenetic analyses show that the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata).

description: Supplemental Figures from Pyataeva et al. 2016. DNA barcodes unite two problematic taxa: the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata). Zootaxa.<b>Figure S1.</b> Neighbor joining topology for 16S sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=4), along with all (n=1948) publicly available 16S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 6 of 27 and highlighted in yellow. The topology shows these taxa diverging near the base of a clade containing all sampled members of Aplanulata. <b>Figure S2.</b> Neighbor joining topology for COI sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=5), along with all (n=1614) publicly available COI sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> samples are found on page 3 of 32, and highlighted in yellow, branching among exemplars of Aplanulata, which do not form a clade in the NJ topology. <i>Plotocnide/Boreohyra</i> samples are highlighted in yellow and found united with COI sequences derived from another putative member of Aplanulata, <i>Margelopsis</i> on page 26 of 32. <b>Figure S3.</b> Maximum likelihood topology for 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 10 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata. <b>Figure S4.</b> Consensus of 420 bootstrap maximum likelihood analyses of 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on pages 8 and 9 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata.
DOI: 10.6084/m9.figshare.3406654.v1
title: FigS1_16S NJ Topology HKY.pdf

description: Supplemental Figures from Pyataeva et al. 2016. DNA barcodes unite two problematic taxa: the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata). Zootaxa.<b>Figure S1.</b> Neighbor joining topology for 16S sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=4), along with all (n=1948) publicly available 16S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 6 of 27 and highlighted in yellow. The topology shows these taxa diverging near the base of a clade containing all sampled members of Aplanulata. <b>Figure S2.</b> Neighbor joining topology for COI sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=5), along with all (n=1614) publicly available COI sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> samples are found on page 3 of 32, and highlighted in yellow, branching among exemplars of Aplanulata, which do not form a clade in the NJ topology. <i>Plotocnide/Boreohyra</i> samples are highlighted in yellow and found united with COI sequences derived from another putative member of Aplanulata, <i>Margelopsis</i> on page 26 of 32. <b>Figure S3.</b> Maximum likelihood topology for 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 10 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata. <b>Figure S4.</b> Consensus of 420 bootstrap maximum likelihood analyses of 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on pages 8 and 9 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata.
DOI: 10.6084/m9.figshare.3406654.v2
title: Phylogenetic analyses show that two problematic taxa: the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata).

description: Supplemental Figures from Pyataeva et al. 2016. DNA barcodes unite two problematic taxa: the meiobenthic Boreohydra simplex is a life-cycle stage of Plotocnide borealis (Hydrozoa: Aplanulata). Zootaxa.<b>Figure S1.</b> Neighbor joining topology for 16S sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=4), along with all (n=1948) publicly available 16S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 6 of 27 and highlighted in yellow. The topology shows these taxa diverging near the base of a clade containing all sampled members of Aplanulata. <b>Figure S2.</b> Neighbor joining topology for COI sequences derived from samples of <i>Plotocnide borealis</i> (n=4) and <i>Boreohydra simplex </i>(n=5), along with all (n=1614) publicly available COI sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> samples are found on page 3 of 32, and highlighted in yellow, branching among exemplars of Aplanulata, which do not form a clade in the NJ topology. <i>Plotocnide/Boreohyra</i> samples are highlighted in yellow and found united with COI sequences derived from another putative member of Aplanulata, <i>Margelopsis</i> on page 26 of 32. <b>Figure S3.</b> Maximum likelihood topology for 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on page 10 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata. <b>Figure S4.</b> Consensus of 420 bootstrap maximum likelihood analyses of 18S sequences derived from samples of <i>Plotocnide borealis</i> (n=2) and <i>Boreohydra simplex </i>(n=2), along with all (n=519) publicly available 18S sequences from exemplars of Hydroidolina in Genbank. <i>Protohydra</i> and <i>Plotocnide/Boreohyra</i> samples are found on pages 8 and 9 of 18, branching near and at, respectively, the clade including all exemplars of Aplanulata.
DOI: 10.6084/m9.figshare.3406618
title: Random Walks on Graphs: non-standard upper bounds for maximum hitting time

description: In this article (motivated by question on existence of finite-memory algorithm to determine connectedness of a graph) we explore a non-standard approach to finding upper bounds for maximum hitting time for random walks on finite undirected graphs.<br><br>We prove specific (and in some cases, exact) upper bounds for maximum hitting time for random walks on undirected graphs formulated as functions of the number of graph’s edges. Among them, the theorem that states that the maximum hitting time for symmetric random walk on connected graph with n edges is less than or equal to n2.<br>We also consider asymmetric random walks on trees and connected graphs to find upper bounds for hitting time as simple functions of n and , where is a simple measure of walk’s asymmetry (or bias).
DOI: 10.6084/m9.figshare.3406618.v2
title: Random Walks on Graphs: non-standard upper bounds for maximum hitting time

description: In this article (motivated by question on existence of finite-memory algorithm to determine connectedness of a graph) we explore a non-standard approach to finding upper bounds for maximum hitting time for random walks on finite undirected graphs.<br><br>We prove specific (and in some cases, exact) upper bounds for maximum hitting time for random walks on undirected graphs formulated as functions of the number of graph’s edges. Among them, the theorem that states that the maximum hitting time for symmetric random walk on connected graph with n edges is less than or equal to n2.<br>We also consider asymmetric random walks on trees and connected graphs to find upper bounds for hitting time as simple functions of n and , where is a simple measure of walk’s asymmetry (or bias).
DOI: 10.6084/m9.figshare.3406618.v4
title: Random Walks on Graphs: non-standard upper bounds for maximum hitting time

description: In this article (motivated by question on existence of finite-memory algorithm to determine connectedness of a graph) we explore a non-standard approach to finding upper bounds for maximum hitting time for random walks on finite undirected graphs.<br><br>We prove specific (and in some cases, exact) upper bounds for maximum hitting time for random walks on undirected graphs formulated as functions of the number of graph’s edges. Among them, the theorem that states that the maximum hitting time for symmetric random walk on connected graph with n edges is less than or equal to n2.<br>We also consider asymmetric random walks on trees and connected graphs to find upper bounds for hitting time as simple functions of n and , where is a simple measure of walk’s asymmetry (or bias).
DOI: 10.6084/m9.figshare.3406615
title: Validated screening tools for common mental disorders in low and middle income countries: A systematic review. (Ali et al., 2016) PLOS ONE. S1 Results Database

description: Complete database of results extracted from the screening tool validation studies included in Ali et al. (2016) Validated screening tools for common mental disorders in low and middle income countries: A systematic review. PLOS ONE.
DOI: 10.6084/m9.figshare.3406615.v1
title: S1 File. Results Database

description: Complete database of results extracted from the included studies.
DOI: 10.6084/m9.figshare.3406615.v3
title: Validated screening tools for common mental disorders in low and middle income countries: A systematic review. (Ali et al., 2016) PLOS ONE. S1 Results Database

description: Complete database of results extracted from the screening tool validation studies included in Ali et al. (2016) Validated screening tools for common mental disorders in low and middle income countries: A systematic review. PLOS ONE.
DOI: 10.6084/m9.figshare.3406615.v2
title: S1 Results Database (Ali et al., 2016)

description: Complete database of results extracted from the screening tool validation studies included in Ali et al. (2016) Validated screening tools for common mental disorders in low and middle income countries: A systematic review. PLOS ONE.
DOI: 10.6084/m9.figshare.3406612
title: Biomechanical Comparison Study of a Modern Fibular Nail and Distal Fibular Locking Plate in AO/OTA 44C2 Ankle Fractures

description: Raw data from paper examining the biomechanical characteristics of a fibular nail for ankle fracture fixation.
DOI: 10.6084/m9.figshare.3406612.v2
title: Biomechanical Comparison Study of a Modern Fibular Nail and Distal Fibular Locking Plate in AO/OTA 44C2 Ankle Fractures

description: Raw data from paper examining the biomechanical characteristics of a fibular nail for ankle fracture fixation.
DOI: 10.6084/m9.figshare.3406612.v1
title: Fibular_Nail_Data.xls

description: Raw data from paper examining the biomechanical characteristics of a fibular nail for ankle fracture fixation.
DOI: 10.6084/m9.figshare.3406594
title: Vocabulary of Scientific Disciplines

description: Vocabulary based on DFG'S Classification of Subject Area, Review Board, Research Area and Scientific Discipline (2016 - 2019) <br>
DOI: 10.6084/m9.figshare.3406585
title: Vestibular function following unilateral cochlear implantation for profound sensorineural hearing loss (sharable data).xlsx

description: This data set includes data on the following: Twelve post-lingually deafened adults who underwent unilateral cochlear implantation (CI). Twelve patient were included in this pilot study and were assessed pre-operatively and at immediate, one week, and one month post-operative intervals. Assessments consisted of the dizziness handicap inventory (DHI), subjective visual vertical (SVV), and timed up-and-go testing (TUG). When applicable, testing was repeated with the CI on and off. These data are presented here.
DOI: 10.6084/m9.figshare.3406585.v1
title: Vestibular function following unilateral cochlear implantation for profound sensorineural hearing loss (sharable data).xlsx

description: This data set includes data on the following: Twelve post-lingually deafened adults who underwent unilateral cochlear implantation (CI). Twelve patient were included in this pilot study and were assessed pre-operatively and at immediate, one week, and one month post-operative intervals. Assessments consisted of the dizziness handicap inventory (DHI), subjective visual vertical (SVV), and timed up-and-go testing (TUG). When applicable, testing was repeated with the CI on and off. These data are presented here.
DOI: 10.6084/m9.figshare.3406573
title: Atorvastatin for treating spontaneous subarachnoid hemorrhage: study protocol for a randomized double-blind placebo-controlled trial

description: <b>Background: </b>Animal studies have confirmed that statins have neuroprotective effects during and following a subarachnoid hemor­rhage; however, the therapeutic effect of statins in humans remains controversial. The interpretation of data currently available on the clinical application of statins to spontaneous subarachnoid hemorrhage is limited by the small sample sizes used in the studies, making it difficult to draw valid conclusions regarding the multiple neuroprotective effects of statins. Thus, we propose to perform a random­ized double-blind placebo-controlled parallel-group clinical trial to determine the effects of atorvastatin on spontaneous subarachnoid hemorrhage, apoptosis-related factors, and serum inflammatory factors in cerebrospinal fluid and to observe its neuroprotective effect mediated by relieving vasospasm. <b>Methods/Design: </b>This is a randomized parallel-group placebo-controlled double-blind clinical trial. This trial will recruit 300 patients with spontaneous subarachnoid hemorrhage from the Department of Neurosurgery, 101st Hospital of PLA (Wuxi Taihu Hospital). These patients will be equally and randomly assigned to atorvastatin (40 mg/day) and placebo control groups. Outcomes will be evaluated at baseline, 3, 5, and 14 days after hemorrhage, and 6 months after discharge. The primary outcomes will be the results of computed tomography (CT) angiography combined with CT perfusion imaging and conventional CT. The secondary outcomes will be cerebro­spinal fluid analysis, blood testing (tumor necrosis factor α, vascular endothelial growth factor, interleukin-6, and C-reactive protein levels), and the Hunt-Hess classification, the results of transcranial Doppler ultrasonography, and the scores on the Glasgow Coma Scale, the Glasgow Outcome Scale, and the National Institutes of Health Stroke Scale. <b>Discussion: </b>The results of this trial will provide data on the clinical application and neuroregenerative effect of atorvastatin in the acute stage of spontaneous subarachnoid hemorrhage. <b>Trial registration: </b>This trial was registered with the Chinese Clinical Trial Registry (ChiCTR-IPR-14005395) on 18 May 2014. <b>How to cite this article: </b>Chen JH, Wang YH (2016) Atorvastatin for treating spontaneous subarachnoid hemorrhage: study protocol for a randomized double-blind placebo-controlled trial. Asia Pac Clin Transl Nerv Syst Dis 1(2):62-68.
DOI: 10.6084/m9.figshare.3406573.v1
title: Atorvastatin for treating spontaneous subarachnoid hemorrhage: study protocol for a randomized double-blind placebo-controlled trial

description: <b>Background: </b>Animal studies have confirmed that statins have neuroprotective effects during and following a subarachnoid hemor­rhage; however, the therapeutic effect of statins in humans remains controversial. The interpretation of data currently available on the clinical application of statins to spontaneous subarachnoid hemorrhage is limited by the small sample sizes used in the studies, making it difficult to draw valid conclusions regarding the multiple neuroprotective effects of statins. Thus, we propose to perform a random­ized double-blind placebo-controlled parallel-group clinical trial to determine the effects of atorvastatin on spontaneous subarachnoid hemorrhage, apoptosis-related factors, and serum inflammatory factors in cerebrospinal fluid and to observe its neuroprotective effect mediated by relieving vasospasm. <b>Methods/Design: </b>This is a randomized parallel-group placebo-controlled double-blind clinical trial. This trial will recruit 300 patients with spontaneous subarachnoid hemorrhage from the Department of Neurosurgery, 101st Hospital of PLA (Wuxi Taihu Hospital). These patients will be equally and randomly assigned to atorvastatin (40 mg/day) and placebo control groups. Outcomes will be evaluated at baseline, 3, 5, and 14 days after hemorrhage, and 6 months after discharge. The primary outcomes will be the results of computed tomography (CT) angiography combined with CT perfusion imaging and conventional CT. The secondary outcomes will be cerebro­spinal fluid analysis, blood testing (tumor necrosis factor α, vascular endothelial growth factor, interleukin-6, and C-reactive protein levels), and the Hunt-Hess classification, the results of transcranial Doppler ultrasonography, and the scores on the Glasgow Coma Scale, the Glasgow Outcome Scale, and the National Institutes of Health Stroke Scale. <b>Discussion: </b>The results of this trial will provide data on the clinical application and neuroregenerative effect of atorvastatin in the acute stage of spontaneous subarachnoid hemorrhage. <b>Trial registration: </b>This trial was registered with the Chinese Clinical Trial Registry (ChiCTR-IPR-14005395) on 18 May 2014. <b>How to cite this article: </b>Chen JH, Wang YH (2016) Atorvastatin for treating spontaneous subarachnoid hemorrhage: study protocol for a randomized double-blind placebo-controlled trial. Asia Pac Clin Transl Nerv Syst Dis 1(2):62-68.
DOI: 10.6084/m9.figshare.3406558
title: A correction technique for false topographic perception of remote-sensing images based on an inverse topographic correction technique

description: The false topographic perception phenomenon (FTPP) refers to the visual misperception in remote-sensing images that certain types of terrains are visually interpreted as other types in rugged lands, for example, valleys as ridges and troughs as peaks. For this reason, the FTPP can influence the visualization and interpretation of images to a great extent. To scrutinize this problem, the paper firstly reviews and tests the existing FTPP-correction techniques and identifies the inverse slope-matching technique as an effective approach to visually enhance remote-sensing images and retain the colour information. The paper then proposes an improved FTPP-correction procedure that incorporates other image-processing techniques (e.g. linear stretch, histogram matching, and flat-area replacement) to enhance the performance of this technique. A further evaluation of the proposed technique is conducted by applying the technique to various study areas and using different types of remote-sensing images. The result indicates the method is relatively robust and will be a significant extension to geovisual analytics in digital earth research.