cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh0188487.10fu
title: SH0188487.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0188488.10fu
title: SH0188488.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.4uavrk
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Elaeocarpus cristatus Coode"
 ]
}

 The dataset includes 15 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033765-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.veg7zm
title: Occurrence Download

description: A dataset containing 135 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophura edwardsi (Oustalet, 1896)"
 ]
}

 The dataset includes 135 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009994-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m2aawv
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Ecuador",
 "TaxonKey is Ateles fusciceps Gray, 1866"
 ]
}

 The dataset includes 51 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045307-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uk2nvk
title: Occurrence Download

description: A dataset containing 566 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Appendix A1) Distribution of benthic foraminifera in ODP Site 184-1143"
 ]
}

 The dataset includes 566 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009994-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dxdg3g
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Leucoraja melitensis (Clark, 1926)"
 ]
}

 The dataset includes 23 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033905-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nv4we2
title: Occurrence Download

description: A dataset containing 36515 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset includes 36515 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000158-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qfjg58
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Disa engleriana Kraenzl."
 ]
}

 The dataset includes 94 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033779-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.afcl3i
title: Occurrence Download

description: A dataset containing 1247 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Marmosa mexicana Merriam, 1897"
 ]
}

 The dataset includes 1247 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009994-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tw3c5w
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Holoaden bradei Lutz, 1958"
 ]
}

 The dataset includes 77 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045348-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2jwarg
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dryopteris chrysocoma (Christ) C.Chr."
 ]
}

 The dataset includes 523 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033839-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rk7hly
title: Occurrence Download

description: A dataset containing 1488 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico"
 ]
 },
 "HasCoordinate is true",
 "TaxonKey is Quercus berberidifolia Liebm.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1488 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009994-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ayhgkj
title: Occurrence Download

description: A dataset containing 55156 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hyla meridionalis Boettger, 1874"
 ]
}

 The dataset includes 55156 records from 773 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021098-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eaehu5
title: Occurrence Download

description: A dataset containing 4619 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Melanopareia elegans (Lesson, 1844)"
 ]
}

 The dataset includes 4619 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033800-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lbepwb
title: Occurrence Download

description: A dataset containing 738 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pterodroma arminjoniana (Giglioli & Salvadori, 1869)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 738 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009995-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eteuw6
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Nymphargus garciae (Ruiz-Carranza & Lynch, 1995)"
 ]
}

 The dataset includes 38 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021111-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g65t9w
title: Occurrence Download

description: A dataset containing 3719 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dryopteris championii (Benth.) C.Chr. ex Ching"
 ]
}

 The dataset includes 3719 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033796-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjcltr
title: Occurrence Download

description: A dataset containing 2459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhus ovata S.Watson",
 {
 "or" : [
 "Country is United States of America",
 "Country is Canada",
 "Country is Mexico"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2459 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009995-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3x6rxz
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Xenorhina ocellata Van Kampen, 1913"
 ]
}

 The dataset includes 9 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021101-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4zjkm8
title: Occurrence Download

description: A dataset containing 4817 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Pulsatrix melanota (Tschudi, 1844)"
 ]
}

 The dataset includes 4817 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033780-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tpnbs3
title: Occurrence Download

description: A dataset containing 6196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Coutarea hexandra (Jacq.) K.Schum., Coutarea corymbosa Brign., Coutarea mollis Cham., Cinchona souzana (Mart.) Brign., Coutarea campanilla DC., Coutarea flavescens Sessé & Moc. ex DC., Coutarea lindeniana Baill., Coutarea portlandia Dum.Cours., Coutarea pubescens Pohl, Coutarea scherffiana André, Coutarea speciosa Aubl., Exostema souzanum Mart., Gardenia hexagona Lem., Portlandia acuminata Willd. ex Schult., Portlandia hexandra Vell. ex Steud., Portlandia speciosa Baill.)"
 ]
}

 The dataset includes 6196 records from 278 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021113-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vh0lbj
title: Occurrence Download

description: A dataset containing 273 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Potentilla fulgens Wall. ex Hook."
 ]
}

 The dataset includes 273 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009995-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rbgnyc
title: Occurrence Download

description: A dataset containing 2927 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Hylopezus nattereri (Pinto, 1937)"
 ]
}

 The dataset includes 2927 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033781-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v0roy0
title: Occurrence Download

description: A dataset containing 2250 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pinus flexilis E.James"
 ]
}

 The dataset includes 2250 records from 74 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009996-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ezs82y
title: Occurrence Download

description: A dataset containing 108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Granolaria salmo (W.Wood, 1828)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 {
 "not" : {
 "BasisOfRecord" : [
 "is Fossil"
 ]
 }
 },
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is MANAGED"
 ]
 }
 },
 {
 "not" : {
 "EstablishmentMeans" : [
 "is not null"
 ]
 }
 }
 ]
 },
 {
 "or" : [
 "OccurrenceStatus is Present",
 {
 "not" : {
 "OccurrenceStatus" : [
 "is not null"
 ]
 }
 }
 ]
 }
 ]
}

 The dataset includes 108 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053547-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3n966a
title: Occurrence Download

description: A dataset containing 743 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dorstenia mannii Hook.fil."
 ]
}

 The dataset includes 743 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033832-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zdr9p
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Saxifraga nanella var. glabrisepala J.T.Pan"
 ]
}

 The dataset includes 11 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045323-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26607805
title: Additional file 6 of A symbiotic footprint in the plant root microbiome

description: Additional file 6: Table of filtered fungal OTU counts with taxonomy assignments in each sequenced sample.
DOI: 10.6084/m9.figshare.26607808.v1
title: Additional file 7 of A symbiotic footprint in the plant root microbiome

description: Additional file 7: XLSX file of bacterial and fungal OTUs considered primary symbionts that were removed for some portions of the analysis and OTU counts of nodule samples used to define the bacteria primary symbionts.
DOI: 10.6084/m9.figshare.26607799
title: Additional file 4 of A symbiotic footprint in the plant root microbiome

description: Additional file 4: TXT file of all fungal OTU representative sequences.
DOI: 10.6084/m9.figshare.26608012.v1
title: Additional file 4 of Analysis of differences in tobacco leaf microbial communities after redrying in Chinese provinces and from abroad

description: Additional file 4: Table S3. ASV of 16S rRNA sequences analyzed.
DOI: 10.6084/m9.figshare.26679407
title: Additional file 1 of Cost of illness due to respiratory syncytial virus acute lower respiratory tract infection among infants hospitalized in Argentina

description: Additional file 1: Supplementary Table 1. Cost of acute RSV-ARLTI detailed by age groups.
DOI: 10.6084/m9.figshare.26679407.v1
title: Additional file 1 of Cost of illness due to respiratory syncytial virus acute lower respiratory tract infection among infants hospitalized in Argentina

description: Additional file 1: Supplementary Table 1. Cost of acute RSV-ARLTI detailed by age groups.
DOI: 10.15468/dl.xhnfb3
title: Occurrence Download

description: A dataset containing 209550 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-74.28234 45.38786,-74.05546 45.38786,-74.05546 45.53488,-74.28234 45.53488,-74.28234 45.38786))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 209550 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0067170-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26608015.v1
title: Additional file 5 of Analysis of differences in tobacco leaf microbial communities after redrying in Chinese provinces and from abroad

description: Additional file 5: Table S4. ASV of ITS1 sequences analyzed.
DOI: 10.6084/m9.figshare.26679419
title: Additional file 2 of Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

description: Additional file 2: Table S1. The list of 12 reference eQTL panels used in the TWAS for JIA. Table S2. The list of the total TWAS associations for JIA from the connective tissues. Table S3. The list of 35 significant TWAS associations for JIA (PTWAS &lt; 7.55 × 10−07). Table S4. The list of the total PWAS associations for JIA. Asterisks represent significant PWAS associations after Bonferroni correction (PPWAS &lt; 2.16 × 10−05). Table S5. The result of fine-mapping of TWAS/PWAS signals by using the FOCUS. Table S6. Biological pathways significantly involved in JIA, identified by the MAGMA (FDR &lt; 0.05). Table S7. The list of Entrez IDs of genes in 11 co-expression modules identified by WGCNA. Table S8. The result of gene set enrichment analysis with TWAS associations using co-expression modules as reference gene sets. Table S9. Functional annotation of the 11 modules with GO terms using DAVID, respectively. Table S10. HLA allele types having significantly imbalanced distribution between healthy controls and JIA patients (P &lt; 0.05). Table S11. HLA allele types having significantly imbalanced distribution between healthy controls, oligo-JIA, poly-JIA, and sJIA patients (P &lt; 0.05). Table S12. HLA allele types having significantly imbalanced distribution between healthy controls, African JIA, and European JIA patients (P &lt; 0.05). Table S13. The P-values calculated by comparing the alpha diversity of TCRs. Table S14. Expression profiles of gene markers in each T cell cluster.
DOI: 10.6084/m9.figshare.26679419.v1
title: Additional file 2 of Large-scale integrative analysis of juvenile idiopathic arthritis for new insight into its pathogenesis

description: Additional file 2: Table S1. The list of 12 reference eQTL panels used in the TWAS for JIA. Table S2. The list of the total TWAS associations for JIA from the connective tissues. Table S3. The list of 35 significant TWAS associations for JIA (PTWAS &lt; 7.55 × 10−07). Table S4. The list of the total PWAS associations for JIA. Asterisks represent significant PWAS associations after Bonferroni correction (PPWAS &lt; 2.16 × 10−05). Table S5. The result of fine-mapping of TWAS/PWAS signals by using the FOCUS. Table S6. Biological pathways significantly involved in JIA, identified by the MAGMA (FDR &lt; 0.05). Table S7. The list of Entrez IDs of genes in 11 co-expression modules identified by WGCNA. Table S8. The result of gene set enrichment analysis with TWAS associations using co-expression modules as reference gene sets. Table S9. Functional annotation of the 11 modules with GO terms using DAVID, respectively. Table S10. HLA allele types having significantly imbalanced distribution between healthy controls and JIA patients (P &lt; 0.05). Table S11. HLA allele types having significantly imbalanced distribution between healthy controls, oligo-JIA, poly-JIA, and sJIA patients (P &lt; 0.05). Table S12. HLA allele types having significantly imbalanced distribution between healthy controls, African JIA, and European JIA patients (P &lt; 0.05). Table S13. The P-values calculated by comparing the alpha diversity of TCRs. Table S14. Expression profiles of gene markers in each T cell cluster.
DOI: 10.6084/m9.figshare.26607874.v1
title: Additional file 1 of Postoperative Choroidal Vascular Biomarkers in Eyes with Rhegmatogenous Retinal Detachment-Related Giant Retinal Tears

description: Additional file 1. Giant retinal tear_choroidal vascularity index_Data analysis.R.
DOI: 10.6084/m9.figshare.26607874
title: Additional file 1 of Postoperative Choroidal Vascular Biomarkers in Eyes with Rhegmatogenous Retinal Detachment-Related Giant Retinal Tears

description: Additional file 1. Giant retinal tear_choroidal vascularity index_Data analysis.R.