cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/121103
title: Meteorological Station data collected during research cruise TN326 using a RM Young 26800 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185146
title: Tasmanian devil faecal virome virus genome sequences

description: The Tasmanian devil faecal virome was characterised using both metagenomics and meta-transcriptomics. For metagenomics, sequencing libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina) according to the manufacturers instructions with the following modifications: (i) the tagmentation time was reduced to 4 min to increase fragment size, (ii) input DNA was increased to 1.2 ng/ l-1 and (iii) reagent quantities were halved to further increase the fragment size. Paired-end (100 bp) sequencing of each library was performed on a Hiseq2500 platform (Illumina).For meta-transcriptomics, the RNA pools were depleted of host and bacteria rRNA using a Ribo-Zero-Gold (Epidemiology) kit (Illumina) before constructing sequencing libraries using a TruSeq total RNA Library Preparation Kit (Illumina). Paired-end (75 bp) sequencing of each library was performed on a NextSeq500 HO platform (Illumina).Sequence reads were de-multiplexed and quality trimmed with Trimmomatic and assembled de novo using Trinity. Genome sequences for each virus was extended by merging related contigs. Gaps in the genome were filled either by mapping the reads against the existing scaffold or by RT-PCR and Sanger sequencing. Putative ORFs in viral genomes were predicted by the Geneious 8.1 software or NCBI ORF finder, and annotated based on their similarity to previous published virus genomes. <br><br>
DOI: 10.7284/119130
title: Multibeam Echosounder data collected during research cruise TN326 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185146.v1
title: Virus genome sequences

description: The Tasmanian devil faecal virome was characterised using both metagenomics and meta-transcriptomics. For metagenomics, sequencing libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina) according to the manufacturers instructions with the following modifications: (i) the tagmentation time was reduced to 4 min to increase fragment size, (ii) input DNA was increased to 1.2 ng/ l-1 and (iii) reagent quantities were halved to further increase the fragment size. Paired-end (100 bp) sequencing of each library was performed on a Hiseq2500 platform (Illumina).For meta-transcriptomics, the RNA pools were depleted of host and bacteria rRNA using a Ribo-Zero-Gold (Epidemiology) kit (Illumina) before constructing sequencing libraries using a TruSeq total RNA Library Preparation Kit (Illumina). Paired-end (75 bp) sequencing of each library was performed on a NextSeq500 HO platform (Illumina).Sequence reads were de-multiplexed and quality trimmed with Trimmomatic and assembled de novo using Trinity. Genome sequences for each virus was extended by merging related contigs. Gaps in the genome were filled either by mapping the reads against the existing scaffold or by RT-PCR and Sanger sequencing. Putative ORFs in viral genomes were predicted by the Geneious 8.1 software or NCBI ORF finder, and annotated based on their similarity to previous published virus genomes. <br><br>
DOI: 10.7284/121105
title: Radiometer data collected during research cruise TN326 using a Biospherical QSR-2150 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185146.v3
title: Tasmanian devil faecal virome virus genome sequences

description: The Tasmanian devil faecal virome was characterised using both metagenomics and meta-transcriptomics. For metagenomics, sequencing libraries were constructed using the Nextera XT DNA Library Preparation Kit (Illumina) according to the manufacturers instructions with the following modifications: (i) the tagmentation time was reduced to 4 min to increase fragment size, (ii) input DNA was increased to 1.2 ng/ l-1 and (iii) reagent quantities were halved to further increase the fragment size. Paired-end (100 bp) sequencing of each library was performed on a Hiseq2500 platform (Illumina).For meta-transcriptomics, the RNA pools were depleted of host and bacteria rRNA using a Ribo-Zero-Gold (Epidemiology) kit (Illumina) before constructing sequencing libraries using a TruSeq total RNA Library Preparation Kit (Illumina). Paired-end (75 bp) sequencing of each library was performed on a NextSeq500 HO platform (Illumina).Sequence reads were de-multiplexed and quality trimmed with Trimmomatic and assembled de novo using Trinity. Genome sequences for each virus was extended by merging related contigs. Gaps in the genome were filled either by mapping the reads against the existing scaffold or by RT-PCR and Sanger sequencing. Putative ORFs in viral genomes were predicted by the Geneious 8.1 software or NCBI ORF finder, and annotated based on their similarity to previous published virus genomes. <br><br>
DOI: 10.7284/121282
title: Speedlog data collected during research cruise TN326 using a JRC JLN-550 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185125
title: Laser induced ablation at particles

description: Laser induced ablation at particles
DOI: 10.7284/121280
title: SSV (Sound Speed Velocimeter) data collected during research cruise TN326 using a AML SV&T instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185125.v1
title: Laser induced ablation at particles

description: Laser induced ablation at particles
DOI: 10.7284/121281
title: TSG (Thermosalinograph) data collected during research cruise TN326 using a Sea-Bird SBE-21 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119134
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN327 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121108
title: Anemometer data collected during research cruise TN327 using a RM Young 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185071
title: mRNA-sequecing analysis of TGFb-activated hHSC with or without iPSC-derived EVs .xlsx

description: mRNA-sequecing analysis of TGFbeta-activated human primary hepatic stellate cells (hHSCs) in presence or absence of induced pluripotent stem cell (iPSC)-derived extracellular vesicles (EVs). Three groups were included in this analysis:1) Untreated hHSCs (n=3)2) TGFbeta-treated hHSCs (n=3)3) TGFbeta-treated hHSC + iPSC-EVs Average values of each group are reported in the excel table with p-values. <br><br><br>
DOI: 10.7284/119138
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise TN327 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7185071.v1
title: RNA-sequecing analysis of TGFb-activated hHSC with or without iPSC-derived EVs .xlsx

description: mRNA-sequecing analysis of TGFbeta-activated human primary hepatic stellate cells (hHSCs) in presence or absence of induced pluripotent stem cell (iPSC)-derived extracellular vesicles (EVs). Three groups were included in this analysis:1) Untreated hHSCs (n=3)2) TGFbeta-treated hHSCs (n=3)3) TGFbeta-treated hHSC + iPSC-EVs Average values of each group are reported in the excel table with p-values. <br><br><br>
DOI: 10.25373/ctsnet.7185017
title: Pulmonary Alveolar Microlithiasis: A Rare Indication for Pulmonary Transplantation

description: The authors discuss a right unipulmonary transplant for pulmonary alveolar microlithiasis, a rare indication for lung transplantation.
DOI: 10.7284/119139
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN327 using a C&C C-Nav 3050 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.25373/ctsnet.7185017.v1
title: Pulmonary Alveolar Microlithiasis: A Rare Indication for Pulmonary Transplantation

description: The authors discuss a right unipulmonary transplant for pulmonary alveolar microlithiasis, a rare indication for lung transplantation.
DOI: 10.7284/121283
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN327 using a C&C C-Nav 2000 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7184894
title: How to use social media engagement to ensure research's real-world impact

description: Slides from the October 9 2018 webinar for the Canadian Association of Research Administrators. Based on a presentation delivered at CARA Annual Meeting 2018 in Ottawa, Canada in May 2018.<br>
DOI: 10.6084/m9.figshare.7184921
title: Suppression of SESN1 reduces cisplatin and hyperthermia resistance through increasing reactive oxygen species (ROS) in human maxillary cancer cells

description: <b>Introduction:</b> Cisplatin is used as a standard chemotherapeutic agent for head and neck cancer treatment. However, some head and neck cancers have cisplatin resistance, leading to difficulty in treatment and poor prognosis. Overcoming cisplatin resistance remains an important strategy to improve prognoses for head and neck cancer patients. <b>Objective:</b> Elucidation of the mechanisms underlying cisplatin resistance can suggest novel targets to enhance the anticancer effects of cisplatin for treating head and neck cancers. <b>Material and methods:</b> We used a cisplatin-resistant human maxillary cancer cell line, IMC-3CR to analyse the cisplatin resistance mechanisms. Cisplatin-induced genes were analysed in IMC-3CR cells using PCR array. Among the genes with expression increased by cisplatin, we specifically examined SESN1. SESN family reportedly regenerates peroxiredoxin and suppresses oxidative DNA injury by reactive oxygen species (ROS), which can be induced by chemotherapeutic agents such as cisplatin, radiation, and hyperthermia. The function of SESN1 in cisplatin resistance and ROS generation were analysed using specific RNAi. <b>Results:</b> Results show that SESN1 was induced by cisplatin treatment in IMC-3CR cells. Suppression of SESN1 by RNAi induced apoptosis and reduced cell viability through enhancement of ROS after cisplatin treatment. Moreover, suppression of SESN1 enhanced the cell-killing effects of hyperthermia with increased ROS, but did not affect the cell-killing effects of radiation. <b>Conclusions:</b> This study demonstrated the participation of SESN1 in cisplatin and hyperthermia resistance of human head and neck cancers. SESN1 is a novel molecular target to overcome cisplatin resistance and hyperthermia resistance and improve head and neck cancer treatment.
DOI: 10.7284/119137
title: Gravimeter data collected during research cruise TN327 using a Bell BGM-3 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7184894.v1
title: How to use social media engagement to ensure research's real-world impact

description: Slides from the October 9 2018 webinar for the Canadian Association of Research Administrators. Based on a presentation delivered at CARA Annual Meeting 2018 in Ottawa, Canada in May 2018.<br>
DOI: 10.6084/m9.figshare.7184921.v1
title: Suppression of SESN1 reduces cisplatin and hyperthermia resistance through increasing reactive oxygen species (ROS) in human maxillary cancer cells

description: <b>Introduction:</b> Cisplatin is used as a standard chemotherapeutic agent for head and neck cancer treatment. However, some head and neck cancers have cisplatin resistance, leading to difficulty in treatment and poor prognosis. Overcoming cisplatin resistance remains an important strategy to improve prognoses for head and neck cancer patients. <b>Objective:</b> Elucidation of the mechanisms underlying cisplatin resistance can suggest novel targets to enhance the anticancer effects of cisplatin for treating head and neck cancers. <b>Material and methods:</b> We used a cisplatin-resistant human maxillary cancer cell line, IMC-3CR to analyse the cisplatin resistance mechanisms. Cisplatin-induced genes were analysed in IMC-3CR cells using PCR array. Among the genes with expression increased by cisplatin, we specifically examined SESN1. SESN family reportedly regenerates peroxiredoxin and suppresses oxidative DNA injury by reactive oxygen species (ROS), which can be induced by chemotherapeutic agents such as cisplatin, radiation, and hyperthermia. The function of SESN1 in cisplatin resistance and ROS generation were analysed using specific RNAi. <b>Results:</b> Results show that SESN1 was induced by cisplatin treatment in IMC-3CR cells. Suppression of SESN1 by RNAi induced apoptosis and reduced cell viability through enhancement of ROS after cisplatin treatment. Moreover, suppression of SESN1 enhanced the cell-killing effects of hyperthermia with increased ROS, but did not affect the cell-killing effects of radiation. <b>Conclusions:</b> This study demonstrated the participation of SESN1 in cisplatin and hyperthermia resistance of human head and neck cancers. SESN1 is a novel molecular target to overcome cisplatin resistance and hyperthermia resistance and improve head and neck cancer treatment.
DOI: 10.7284/121284
title: Gyrocompass data collected during research cruise TN327 using a Sperry MK-37 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121107
title: Meteorological Station data collected during research cruise TN327 using a RM Young 26800 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/119136
title: Multibeam Echosounder data collected during research cruise TN327 using a Kongsberg EM302 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121109
title: Radiometer data collected during research cruise TN327 using a Biospherical QSR-2150 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7183043
title: qpcr_data_lps.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183043.v1
title: qpcr_data_lps.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.7284/121287
title: Speedlog data collected during research cruise TN327 using a JRC JLN-550 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7183040
title: qPCR_data_infl.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183037
title: lps_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183037.v1
title: lps_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183040.v1
title: qPCR_data_infl.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183034
title: lps_data.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183034.v1
title: lps_data.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.7284/121285
title: SSV (Sound Speed Velocimeter) data collected during research cruise TN327 using a AML SV&T instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7183031
title: infl_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183031.v1
title: infl_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.7284/119148
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN328 using a C&C C-Nav 3050 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7183022
title: gst_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183022.v1
title: gst_counts.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183025
title: infl_data.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183025.v1
title: infl_data.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183016
title: demographics.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183019
title: gst.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.7284/121288
title: GNSS (Global Navigation Satellite System) data collected during research cruise TN328 using a C&C C-Nav 2000 instrument system onboard the platform RV Thomas G. Thompson
DOI: 10.6084/m9.figshare.7183016.v1
title: demographics.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183019.v1
title: gst.csv

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183010
title: Data Sharing Repository.sav

description: This dataset contains the participants and variables used for primary analyses for dissertation study examining effects of minority stress condition on executive function and component processes in ANOVA analysis, controlling for Information from WAIS. All cognitive scores are scaled.
DOI: 10.7284/121292
title: Speedlog data collected during research cruise TN328 using a JRC JLN-550 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7183010.v1
title: Data Sharing Repository.sav

description: This dataset contains the participants and variables used for primary analyses for dissertation study examining effects of minority stress condition on executive function and component processes in ANOVA analysis, controlling for Information from WAIS. All cognitive scores are scaled.
DOI: 10.6084/m9.figshare.7183007
title: 1803IMA.Rmd

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.6084/m9.figshare.7183007.v1
title: 1803IMA.Rmd

description: These materials accompany the following manuscript:<br>Pence BD, Yarbro JR. Classical monocytes maintain ex vivo glycolytic metabolism and early but not later inflammatory responses in older adults. <i>Immunity & Ageing </i>16: 3, 2019.
DOI: 10.7284/119149
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise TN329 using a Hawaii UHDAS instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/121116
title: Anemometer data collected during research cruise TN329 using a RM Young 06206 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.7182986
title: SHRSHRGFP N&B in BL

description: N&B of SHR:SHR-GFP plants treated with BL
DOI: 10.6084/m9.figshare.7182986.v1
title: SHRSHRGFP N&B in BL

description: N&B of SHR:SHR-GFP plants treated with BL
DOI: 10.7284/119152
title: Expendable Probe data collected during research cruise TN329 using a Sippican MK21 instrument system onboard the platform RV Thomas G. Thompson

description: Original (unprocessed) data collected during a Field_expedition