cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/94axsd
title: The Sponges of the Carmel Pinnacles Marine Protected Area

description: This dataset contains the digitized treatments in Plazi based on the original journal article Turner, Thomas L., Lonhart, Steve I. (2023): The Sponges of the Carmel Pinnacles Marine Protected Area. Zootaxa 5318 (2): 151-194, DOI: 10.11646/zootaxa.5318.2.1, URL: http://dx.doi.org/10.11646/zootaxa.5318.2.1AbstractCalifornia's network of marine protected areas was created to protect the diversity and abundance of native marine life, but the status of some taxa is very poorly known. Here we describe the sponges (phylum Porifera) from the Carmel Pinnacles State Marine Reserve, as assessed by a SCUBA-based survey in shallow waters. Of the 29 sponge species documented, 12 (41%) of them were previously unknown. Using a combination of underwater photography, DNA sequencing, and morphological taxonomy, we greatly improve our understanding of the status and distribution of previously described species and formally describe the new species as Hymedesmia promina sp. nov., Phorbas nebulosus sp. nov., Clathria unoriginalis sp. nov., Clathria rumsena sp. nov., Megaciella sanctuarium sp. nov., Mycale lobos sp. nov., Xestospongia ursa sp. nov., Haliclona melissae sp. nov., Halichondria loma sp. nov., Hymeniacidon fusiformis sp. nov., Scopalina carmela sp. nov., and Obruta collector gen. nov., sp. nov. An additional species, Lissodendoryx topsenti (de Laubenfels 1930), is moved to Hemimycale, and H. polyboletus comb. nov., nom. nov. is created due to preoccupation by H. topsenti (Burton, 1929). Several of the new species appear to be rare and/or have very restricted distributions, as they were not found at comparative survey sites outside of Carmel Bay. These results illustrate the potential of qualitative presence/ absence systematic surveys of understudied taxa to discover and document substantial novel diversity.
DOI: 10.5281/zenodo.17021231
title: Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics

description: The newest version is available here: https://zenodo.org/records/18067544

This zenodo repository contains data produced or used in the paper "Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics".

It is divided in three compressed folders, "benchmark.tar.gz" where training Paraplume was done, "data_with_scripts.tar.gz" containing data and scripts regarding applications of Paraplume and "graph_extension.tar.gz" where we reproduced the implementation of Paragraph to combine it with Paraplume. In each folder a detailed README is available.
DOI: 10.5281/zenodo.17021232
title: Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics

description: The newest version is available here: https://zenodo.org/records/18067544

This zenodo repository contains data produced or used in the paper "Paraplume: A fast and accurate paratope prediction method provides insights into repertoire-scale binding dynamics".

It is divided in three compressed folders, "benchmark.tar.gz" where training Paraplume was done, "data_with_scripts.tar.gz" containing data and scripts regarding applications of Paraplume and "graph_extension.tar.gz" where we reproduced the implementation of Paragraph to combine it with Paraplume. In each folder a detailed README is available.
DOI: 10.15468/rpmzvb
title: Gastropods of the Lower Jurassic Hierlatz Limestone Formation, part 4. New eucycloidean, trochoidean, neritimorph, and caenogastropod taxa in the fauna of the Hierlatz Alpe (Hallstatt, Austria)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Szabó, János (2018): Gastropods of the Lower Jurassic Hierlatz Limestone Formation, part 4. New eucycloidean, trochoidean, neritimorph, and caenogastropod taxa in the fauna of the Hierlatz Alpe (Hallstatt, Austria). Fragmenta Palaeontologica Hungarica 35: 61-84, DOI: 10.17111/FragmPalHung.2018.35.61, URL: https://doi.org/10.17111/fragmpalhung.2018.35.61Abstract – Twelve gastropod species, new for the locality, are added to the Lower Jurassic fauna of the Hierlatz Alpe. Most of them represent also new taxa, four genera and seven species: Biconomphalus singularis n. gen. n. sp., Karsaconulus robustus n. gen. n. sp., Csigabaga nillae n. gen. n. sp., Hierlatzella arcana n. gen. n. sp., Eucyclomphalus? subgradatus n. sp., Cupaniella praebiplicata n. sp., and Callotrochus? avernoides n. sp. With 71 figures.
DOI: 10.15468/b98uk4
title: The genera of Cyperaceae of Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Rasaminirina, Fitiavana, Larridon, Isabel (2023): The genera of Cyperaceae of Madagascar. Plant Ecology and Evolution 156 (3): 276-310, DOI: http://dx.doi.org/10.5091/plecevo.98847, URL: http://dx.doi.org/10.5091/plecevo.98847
DOI: 10.15468/m9y38a
title: Käfer (Coleoptera) vom östlichen Napfgebiet (Romoos und Umgebung), Kanton Luzern

description: This dataset contains the digitized treatments in Plazi based on the original journal article Herger, Peter, Germann, Christoph (2015): Käfer (Coleoptera) vom östlichen Napfgebiet (Romoos und Umgebung), Kanton Luzern. Entomo Helvetica 8: 59-64, DOI: 10.5169/seals-985933Abstract: Coleoptera from the eastern Napfgebiet (near Romoos), canton Lucerne. − During a biodiversity study on the eastern side of the Napf near Romoos (LU), insects were regularly collected both day and night from 1992 to 1994. The specimens collected included 16 686 beetles representing more than 408 species. Twelve species are new to central Switzerland and eleven species are new to the canton of Lucerne.Zusammenfassung: Im Rahmen von Biodiversitäts-Untersuchungen im östlichen Napfgebiet in der Umgebung von Romoos (LU) wurden in den Jahren 1992–1994 mittels Licht- und Tagfang regelmässig Insekten gesammelt. Dabei umfasste die Käferausbeute 16 686 Exemplare in mehr als 408 Arten aus 53 Familien. 12 Arten werden erstmals für die Zentralschweiz und 11 Arten erstmals für den Kanton Luzern nachgewiesen.
DOI: 10.15468/2ykzgb
title: To The Knowledge Of The Genus Callimetopus Blanchard, 1853 (Coleoptera: Cerambycidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Barševskis, Arvīds (2018): To The Knowledge Of The Genus Callimetopus Blanchard, 1853 (Coleoptera: Cerambycidae). Acta Biologica Universitatis Daugavpiliensis 18 (1): 95-104, DOI: 10.5281/zenodo.10601947
DOI: 10.15468/dl.9dnc9s
title: Occurrence Download

description: A dataset containing 24286 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Coptis"
 ]
}

 The dataset includes 24286 records from 222 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066789-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/cmns9n
title: Order Chiroptera - Family Mormoopidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Wilson, Don E., Reeder, DeeAnn (2005): Order Chiroptera - Family Mormoopidae. In: Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 1. Baltimore: The Johns Hopkins University Press: 426-428, ISBN: 0-8018-8221-4, DOI: 10.5281/zenodo.7316519
DOI: 10.15468/2gyr4q
title: A review of Copelatus Erichson, 1832 of Mainland China, with description of ten new species from the japonicus complex (Coleoptera: Dytiscidae: Copelatinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jiang, Zhuo-Yin, Zhao, Shuang, Yang, Zhen-Yu, Jia, Feng-Long, Hájek, Jiří (2022): A review of Copelatus Erichson, 1832 of Mainland China, with description of ten new species from the japonicus complex (Coleoptera: Dytiscidae: Copelatinae). Zootaxa 5124 (3): 251-295, DOI: 10.11646/zootaxa.5124.3.1AbstractThe species of the genus Copelatus Erichson, 1832 from China Mainland are reviewed. 22 species are recorded in total. Ten new species: C. dentatipenis sp. nov. (Fujian, Hunan, Jiangxi), C. diversistriatus sp. nov. (Yunnan; Laos, Myanmar, Thailand), C. felicis sp. nov. (Yunnan), C. miaowangi sp. nov. (Guizhou), C. mopanshanensis sp. nov. (Yunnan), C. nanlingensis sp. nov. (Guangdong), C. puzhelongi sp. nov. (Yunnan; Laos, Vietnam), C. rosulae sp. nov. (Yunnan), C. tengchongensis sp. nov. (Yunnan), and C. xiniudong sp. nov. (Guizhou) are described. Copelatus chinensis Régimbart, 1899 is reinstituted as a valid species with Copelatus collocallosus Falkenström, 1932 and C. collocallosus Falkenström, 1933 as its junior subjective synonyms. One species from Hongkong remains unidentified since it is so far known only from a limited number of females. Additional records are provided for the known species; three species: C. bacchusi Wewalka, 1981, C. malaisei Guignot, 1954 and C. parallelus Zimmermann, 1920 are recorded from China for the first time. Copelatus takakurai Satô, 1985 is withdrawn from the Chinese fauna. All species are diagnosed, and their habitus and male genitalia are illustrated. An updated identification key to Chinese Copelatus is provided.
DOI: 10.15468/dl.7fxv6y
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharodus baeticus",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 36 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066790-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4hzu65
title: Occurrence Download

description: A dataset containing 712 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "OccurrenceStatus is Present",
 "TaxonKey is Asio flammeus",
 "Year 2021-2025"
 ]
}

 The dataset includes 712 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066791-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/bhvjhg
title: A new species and new records of Sericini chafers from the Lower Gangetic Plains in India (Coleoptera: Scarabaeidae: Sericinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bhunia, Debika, Gupta, Devanshu, Sarkar, Subhankar Kumar, Ahrens, Dirk (2023): A new species and new records of Sericini chafers from the Lower Gangetic Plains in India (Coleoptera: Scarabaeidae: Sericinae). Zootaxa 5353 (4): 351-371, DOI: 10.11646/zootaxa.5353.4.3, URL: http://dx.doi.org/10.11646/zootaxa.5353.4.3AbstractHere, we investigated the diversity of Sericini in the faunistically rather unknown Lower Gangetic plains in North India, based on material from the collection of the Zoological Survey of India. We discovered one new species from West Bengal, Maladera kolkataensis Bhunia, Gupta, Sarkar & Ahrens, and provide further records of an additional 23 species belonging to five genera from the lowlands of the states Bihar and West Bengal. Out of these, 21 species represent new state records: 12 for Bihar and nine for West Bengal. All recorded species are briefly documented by diagnostic illustrations.
DOI: 10.15468/v3v7f7
title: Contributions of a small collection of terrestrial microsnails (Pupilloidea, Hypselostomatidae) from Myanmar with description of three new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Tongkerd, Piyoros, Lwin, Ngwe, Pall-Gergely, Barna, Chanabun, Ratmanee, Pholyotha, Arthit, Prasankok, Pongpun, Seesamut, Teerapong, Siriwut, Warut, Srisonchai, Ruttapon, Sutcharit, Chirasak, Panha, Somsak (2024): Contributions of a small collection of terrestrial microsnails (Pupilloidea, Hypselostomatidae) from Myanmar with description of three new species. ZooKeys 1195: 157-197, DOI: http://dx.doi.org/10.3897/zookeys.1195.112112, URL: http://dx.doi.org/10.3897/zookeys.1195.112112
DOI: 10.15468/8znjg9
title: A report on 24 unrecorded bacterial species of Korea isolated in 2016, belonging to the orders Rhizobiales and Sphingomonadales in the class Alphaproteobacteria

description: This dataset contains the digitized treatments in Plazi based on the original journal article Joung, Yochan, Cha, Chang-Jun, Im, Wan-Taek, Jeon, Che Ok, Joh, Kiseong, Kim, Seung-Bum, Kim, Wonyong, Cho, Soon Dong Lee and Jang-Cheon (2018): A report on 24 unrecorded bacterial species of Korea isolated in 2016, belonging to the orders Rhizobiales and Sphingomonadales in the class Alphaproteobacteria. Journal of Species Research 7 (1): 13-23, DOI: 10.12651/JSR.2018.7.1.013
DOI: 10.15468/usqr47
title: Systematics and biogeography of the genus Phalloceros Eigenmann, 1907 (Cyprinodontiformes: Poeciliidae: Poeciliinae), with the description of twenty-one new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lucinda, Paulo Henrique Franco (2008): Systematics and biogeography of the genus Phalloceros Eigenmann, 1907 (Cyprinodontiformes: Poeciliidae: Poeciliinae), with the description of twenty-one new species. Neotropical Ichthyology 6 (2): 113-158, DOI: 10.1590/S1679-62252008000200001, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252008000200001&lng=en&tlng=en
DOI: 10.15468/j9cuha
title: New species, new synonyms, and resurrected taxa: A review of West and Central Palaearctic members of the genus Pseudoanthidium (Apoidea: Megachilidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Kasparek, Max (2024): New species, new synonyms, and resurrected taxa: A review of West and Central Palaearctic members of the genus Pseudoanthidium (Apoidea: Megachilidae). Zootaxa 5541 (1): 1-50, DOI: 10.11646/zootaxa.5541.1.1, URL: http://dx.doi.org/10.11646/zootaxa.5541.1.1AbstractWool carder bees of the genus Pseudoanthidium comprise approximately 60–65 species, which are found in the Palaearctic, Indo-Malayan and Afrotropical realms. Their taxonomic relationships are little understood. Herein, I revised West and Central Palaearctic members of the genus. Four species are described as new, namely P. farsiense sp. nov. from Iran, P. microrubrum sp. nov. from Morocco, P. syriacum sp. nov. from Syria, and P. tajikistanicum sp. nov. from Tajikistan. The largely overlooked species Anthidium fulviventre Friese, 1917, described from Russia, and Anthidium ivanovi Mavromoustakis, 1954, described from Tajikistan, are recognized as members of the Pseudoanthidium genus, as P. fulviventre (Friese, 1917) comb. nov. and P. ivanovi (Mavromoustakis, 1954) stat. resurrect. & comb. nov. Anthidium moricei Friese, 1911, from Jordan, and A. royoi Dusmet, 1915, from Morocco, are resurrected from synonymy with P. melanurum and suggested to be treated as P. moricei (Friese, 1911) stat. resurrect. and P. royoi (Dusmet, 1915) stat. resurrect. & comb. nov. The hitherto unknown males of P. moricei (Friese, 1911) and P. rubellulum Pasteels, 1969 are described based on material from Jordan and Israel, respectively. Royanthidium bicoloripenne Pasteels, 1981 (syn. nov.) from Morocco, is revealed to be a junior synonym of P. octodentatum (Pérez, 1895). Morphological traits, along with DNA sequences of the mitochondrial COI gene (“barcoding gene”), allowed clustering the species in five polytypic and five monotypic species groups. As key character traits of the type species of nominate Pseudoanthidium largely fit the subgeneric characters of the subgenus Royanthidium Pasteels, 1969, Royanthidium is regarded as a junior synonym (syn. nov.) of nominate Pseudoanthidium. The species of the subgenus Exanthidium Pasteels, 1969 form a uniform clade both in terms of morphology and DNA marker. An examination of the non-Palaearctic Pseudoanthidium species is suggested to determine whether Exanthidium deserves subgenus status.
DOI: 10.15468/y4nhcr
title: Order Rodentia - Family Octodontidae

description: This dataset contains the digitized treatments in Plazi based on the original book chapter Wilson, Don E., Reeder, DeeAnn (2005): Order Rodentia - Family Octodontidae. In: Mammal Species of the World: a Taxonomic and Geographic Reference (3 rd Edition), Volume 2. Baltimore: The Johns Hopkins University Press: 1570-1573, ISBN: 0-8018-8221-4, DOI: 10.5281/zenodo.7316535
DOI: 10.15468/mkjzef
title: Revision of Afrotropical Delia Robineau-Desvoidy, 1830 (Diptera: Anthomyiidae), with descriptions of six new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ackland, D. M. (2008): Revision of Afrotropical Delia Robineau-Desvoidy, 1830 (Diptera: Anthomyiidae), with descriptions of six new species. African Invertebrates 49 (1): 1-75, DOI: 10.5733/afin.049.0101ABSTRACTThe Afrotropical Delia is revised to include 20 species. Six new species are described: madagascariensis, ismayi, pseudoventralis, tibila, endorsina and cameroonica. Three new synonymies are established: Chortophila linearis Adams, 1905 = Hylemyia bracata Rondani, 1866; Hylemyia dispar Bezzi, 1908 = Hylemyia bracata Rondani, 1866; and Hylemyia capensis Malloch, 1924 = Hylemyia urbana Malloch, 1924. Hylemyia arambourgi Séguy, 1938 is resurrected from synonymy. The Delia bracata section is expanded to include a new subsection, the ventralis subsection.KEY WORDS: Afrotropical, Anthomyiidae, Delia, revision, taxonomy, new species, phylogeny, crop pests.
DOI: 10.15468/5kavbp
title: Fossil snakes of the Penny Creek Local Fauna from Webster County, Nebraska, USA, and the first record of snakes from the Early Clarendonian (12.5 - 12 Ma) of North America

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jacisin Iii, John J., Lawing, A. Michelle (2024): Fossil snakes of the Penny Creek Local Fauna from Webster County, Nebraska, USA, and the first record of snakes from the Early Clarendonian (12.5 - 12 Ma) of North America. Palaeontologia Electronica (a 2) 27 (1): 1-42, DOI: 10.26879/1220, URL: http://dx.doi.org/10.26879/1220ABSTRACTThe Penny Creek Local Fauna in southern Webster County, Nebraska, is an early Clarendonian fossil locality within the Ash Hollow Formation. Undescribed fossils from previously collected Penny Creek material represent the first record of snakes from this time interval and confirm the presence of multiple taxa immediately following the Mid-Miocene Climatic Optimum. We identified eight taxa from the locality, including one booid (Charina), three colubrines (Pantherophis, Lampropeltis, and Salvadora), a dipsadid (Heterodon /Paleoheterodon), and several natricids (Neonatrix elongata, Neonatrix magna, and Nerodia). Of these snakes, only Neonatrix is an extinct genus, Charina and Salvadora are presently extirpated from the area, and all other genera are represented in the Central Great Plains today. Habitats occupied by extant members of genera represented in the Penny Creek snake assemblage suggest a relatively open environment with loose substrates and plentiful ground cover near a permanent water source. This further corroborates previous geological and mammalian paleoecological assessments of the Penny Creek area as a somewhat open, woodland-prairie ecotone environment near a permanent, high-energy fluvial water source. Finally, the snakes of Penny Creek help contribute to our understanding of the modernization of North American snake assemblages in the Central Great Plains by providing data for a poorly understood time within the evolution of North American snakesJohn J. Jacisin III. Department of Integrative Biology, The University of Texas. Austin, Texas, USA.john.jacisin@austin.utexas.eduA. Michelle Lawing. Department of Ecology and Conservation Biology, Texas A&M University. College Station, Texas, USA. alawing@tamu.edu
DOI: 10.15468/dl.7atvpf
title: Occurrence Download

description: A dataset containing 955 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcharodus lavatherae",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 1000",
 "Year is greater than or equal to 1970",
 "Country is one of (Italy, Switzerland, Germany, Austria, Slovenia, France)"
 ]
}

 The dataset includes 955 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066792-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fur52v
title: Occurrence Download

description: A dataset containing 2628171 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spilopelia chinensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-180 -90, 180 -90, 180 90, -180 90, -180 -90))"
 ]
}

 The dataset includes 2628171 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0066776-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/j5vgvv
title: New records of acalyptrate Diptera from Sicily (Brachycera, Muscomorpha: Asteiidae, Aulacigastridae, Carnidae, Lonchaeidae, Odiniidae, Pallopteridae, Periscelididae, Piophilidae, Sciomyzidae, Ulidiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ebejer, Martin J., Nicolosi, Giuseppe (2022): New records of acalyptrate Diptera from Sicily (Brachycera, Muscomorpha: Asteiidae, Aulacigastridae, Carnidae, Lonchaeidae, Odiniidae, Pallopteridae, Periscelididae, Piophilidae, Sciomyzidae, Ulidiidae). Fragmenta entomologica 54 (1): 101-104, DOI: 10.13133/2284-4880/766, URL: http://dx.doi.org/10.13133/2284-4880/766AbstractFour families with five species of acalyptrate Diptera are recorded for the first time from Sicily: Aulacigastridae [Aulacigaster falcata Papp, A. leucopeza (Meigen)], Odiniidae [Odinia trinotata Robineau-Desvoidy], Periscelididae [Periscelis annulata (Fallén)] and Carnidae [Meoneura freta Collin]. In six families that were previously known from Sicily, an additional nine new species records are given. The lists of species of Meoneura Rondani of Italy and of Herina Robineau-Desvoidy (Ulidiidae) of Sicily are updated.
DOI: 10.15468/pkxfcn
title: Erratum ‘ Survey of Linyphiidae (Arachnida: Araneae) spiders from Yunnan, China’

description: This dataset contains the digitized treatments in Plazi based on the original journal article Irfan, Muhammad, Zhang, Zhi-Sheng, Peng, Xian-Jin (2023): Erratum ‘ Survey of Linyphiidae (Arachnida: Araneae) spiders from Yunnan, China’. Megataxa 10 (1): 17-19, DOI: 10.11646/megataxa.10.1.3, URL: https://www.mapress.com/mt/article/view/megataxa.10.1.3