cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24803364.v1
title: Liver 1 Subclone Analysis

description: This item contains the code and ads files required to perform the liver sub clone analysis in the manuscript "<b>Niche-DE: niche differential gene expression analysis in spatial transcriptomics data identifies context-dependent cell-cell interactions</b>"
DOI: 10.6084/m9.figshare.24845463.v2
title: Articles Dataset related to AI and Digital Marketing

description: Articles Dataset extracted from Scopus Database related to AI and Digital Marketing (Timeframe 2015-July 2023) for bibliometric analysis.
DOI: 10.6084/m9.figshare.25233355.v2
title: Essential role of lattice oxygen in hydrogen sensing reaction.xlsx

description: Understanding the sensing mechanism of metal oxide semiconductors is imperative to the development of high-performance sensors. The traditional sensing mechanism only recognize the effect of surface chemisorbed oxygen from the air but ignore surface lattice oxygen. Herein, using <i>in-situ</i><i> </i>characterizations, we provide direct experimental evidence that the surface chemisorbed oxygen participated in the sensing process can come from lattice oxygen of the oxides. Further density functional theory (DFT) calculations prove that the <i>p</i>-band center of O serves as a state of art for regulating the participation of lattice oxygen in gas-sensing reactions. Based on our experimental data and theoretical calculations, we discuss mechanisms that are fundamentally different from the conventional mechanism and show that the easily participation of lattice oxygen is helpful for the high response value of the materials.
DOI: 10.6084/m9.figshare.20496558.v2
title: Core field coefficients for the CHAOS-1969 model in the .mat format

description: Core field coefficients for the CHAOS-1969 model in the .mat format derived for the article "Localized origin at the core-mantle boundary of the 1969 geomagnetic impulse".
<br>
Please refer to the project "Localized origin at the core-mantle boundary of the 1969 geomagnetic impulse" for further description (link in REFERENCES).
<br>
Changes in version 2:
- Uploaded README file
- CHAOS-1969.mat file contains coefficients for all models
DOI: 10.6084/m9.figshare.8150708.v1
title: 2019 Untreated JDM RNA-Seq: gene counts

description: This is a dataset related to an RNA-Seq experiment examining 1) the transcriptome alterations in untreated and inactive juvenile dermatomyositis, and 2) a separate cohort of inactive JDM patients that later developed psoriasis.<br>This file contains the gene counts from the RNA-Seq analysis using GRCh38 human genome, STAR aligner, and featureCounts counting.<br>
DOI: 10.17632/dk862y2rsf
title: Dataset Machine Learning for Business

description: This data is sourced from Scopus and is used to analyze literature related to machine learning in a business context. This method was chosen because it provides a comprehensive overview of research developments and trends in science. The process begins with identifying keywords through brainstorming, followed by a document search using a combination of keywords "impact AND machine learning AND Business" in the Scopus database. Inclusion and exclusion criteria were applied to focus the analysis on English-language literature in Accounting, Business, and Management published between 2018 and 2023, resulting in 642 selected documents for further study resulting in 642 selected documents for further analysis.
DOI: 10.6084/m9.figshare.19771150.v1
title: IO-NA_warming_chain_codes

description: This include codes for creating figures
DOI: 10.6084/m9.figshare.21232094.v3
title: Data_Base_Case_2_2005_250_15.xls

description: This is a sample database that contains 50 values created at random, by variations of up to +/-15% via Monte Carlo Simulations, for 5 different variables: Temperature, pH, Shear Stress, CO2 Fugacity and Total Pressure. These values were simulated via NORSOK software and the respective corrosion rates were obtained.
DOI: 10.6084/m9.figshare.12180789.v1
title: Sex difference in embryonic microglia in quail

description: Dataset associated with the Delage and Cornil Dev Neurobiol. 2020 paper titled:
DOI: 10.6084/m9.figshare.20131655.v1
title: Supplementary Material for: Immature Brain Cortical Neurons Have Low Transcriptional Competence to Activate Antiviral Defences and Control RNA Virus Infections

description: Virus infections of the central nervous system (CNS) cause important diseases of humans and animals. As in other tissues, innate antiviral responses mediated by type I interferons (IFNs) are crucially important in controlling CNS virus infections. The maturity of neuronal populations is an established critical factor determining the outcome of CNS virus infection. Using primary cultures of mouse cortical neurons, we investigated the relationships between neuronal maturation, type I IFN responses, and the outcome of Semliki Forest virus infection. The virus replicated better, infected more cells, and produced higher titres of infectious viruses in immature neurons. Complete transcriptome analysis demonstrated that resting immature neurons have low transcriptional competence to mount antiviral responses. They had no detectable transcription of the genes <i>Ddx58</i> and <i>Ifih1</i>, which encode key RNA virus cytoplasmic sensors RIG-I and MDA5, and very low expression of genes encoding key regulators of associated signalling pathways. Upon infection, immature neurons failed to mount an antiviral response as evidenced by their failure to produce chemokines, IFNs, and other cytokines. Treatment of immature neurons with exogenous IFNβ prior to infection resulted in antiviral responses and lower levels of virus replication and infectious virus production. In contrast, resting mature neurons generated a robust antiviral response. This was augmented by pretreatment with IFNβ. Infection of mature neurons derived from IFNAR<sup>−/−</sup> mice did not make an antiviral response and replicated virus to high levels.
DOI: 10.6084/m9.figshare.28566074.v2
title: <b>Megacodon</b> <b>stylophorus</b> genome assembly <b>stylophorus</b> genome assembly

description: <b>Megacodon</b> <b>stylophorus</b> genome assembly<b>Chromosome level genome assembly of </b><b><i>Megacodon stylophorus</i></b><b><i> </i></b><b>identified two rounds of whole genome duplications in tribe Gentianeae.</b>
DOI: 10.17632/24n7pjckj6
title: MotionWatch 8 Based Student Exam Stress Prediction
DOI: 10.17632/z7dbpvn64g
title: Data for: To Determine the Effect of Dynamic Stretching in Lower Limb on Vertical Jump Height in Recreational Athletes and Collegiate Students

description: the study is to compare the effect of dynamic stretching on vertical jump performance in recreational athletes and normal collegiate students
DOI: 10.4121/14393714.v1
title: Terrestrial Laser Scan point cloud of the Morspoort, Leiden, The Netherlands

description: Point cloud of the Morspoort historic city gate, Leiden, the Netherlands, made using the Leica P40 Terrestrial Laser Scanner. The data consists of 8 registered scans from different positions, and contains XYZ coordinates, rgb colours and intensity of the return signal for every point.<br>This dataset was collected on February 22, 2021 for the course "CIE4614 3D Surveying of Civil and Offshore Infrastructure" at the Faculty of Civil Engineering and Geosciences. Subsampled to 1 cm per scan.<br>
DOI: 10.6084/m9.figshare.21830202.v1
title: The Speed Mapping Challenge Cartographic Data

description: Cartographic data of SEGU Team for two sites (Ottawa River and Thunder Bay) for the CHC 2022 Speed Mapping Challenge
DOI: 10.6084/m9.figshare.7229162.v1
title: Diorisis Corpus - Preprocessed files

description: Preprocessed files used to generate the Diorisis Corpus (https://figshare.com/articles/The_Diorisis_Ancient_Greek_Corpus/6187256). Annotation scripts are published at https://github.com/alevatri/diorisis
DOI: 10.6084/m9.figshare.5127220.v1
title: Supplementary Material for: Trimethoprim and Sulfamethoxazole Transmembrane Clearance during Modeled Continuous Renal Replacement Therapy

description: <b><i>Background/Aims:</i></b> There is limited data regarding trimethoprim (TMP)/sulfamethoxazole (SMX) continuous renal replacement therapy (CRRT) dosing. We aimed to estimate TMP/SMX transmembrane clearance (CLtm) during continuous hemofiltration (CH) and continuous hemodialysis (CD) to guide dosing. <b><i>Methods:</i></b> Using an in vitro model, TMP/SMX sieving coefficients (SC) and saturation coefficients (SA) were determined with high-flux polyarylethersulfone and polyacrylonitrile-sodium methallyl sulfonate copolymer hemodiafilters at ultrafiltration/dialysate rates of 1, 2, 3, and 6 l/h. TMP/SMX CLtm was calculated using measured SC and SA. TMP/SMX CRRT doses were modeled using CLtm and published TMP/SMX pharmacokinetic parameters. <b><i>Results:</i></b> TMP SC/SA during CH/CD were significantly higher than SMX SC/SA. During modeling, TMP 10 mg/kg/day and its corresponding SMX dose, 50 mg/kg/day, resulted in steady state TMP/SMX peak concentrations associated with efficacy against <i>Pneumocystis jirovecii</i>. <b><i>Conclusions:</i></b> CRRT resulted in greater TMP CLtm than SMX. TMP 10 mg/kg/day divided q12h may be an appropriate initial dose to consider in patients undergoing CRRT.
DOI: 10.17632/d58cv549v6
title: The chemotherapeutic drug CX-5461 is a potent mutagen in cultured human cells

description: The chemotherapeutic agent CX-5461, or pidnarulex, has been fast-tracked by the United States Food and Drug Administration for early-stage clinical studies of BRCA1-, BRCA2- and PALB2-mutated cancers. It is under investigation in phase I and II trials. Here, we find that, although CX-5461 exhibits synthetic lethality in BRCA1-/BRCA2-deficient cells, it also causes extensive, nonselective, collateral mutagenesis in all three cell lines tested, to magnitudes that exceed known environmental carcinogens.

Deposited here are the de novo mutation lists from the experimental samples included in the study. Whole-genome sequencing short reads were aligned to GRCh38/hg38 using BWA-MEM. Post-processing filters were applied to improve the specificity of mutation-calling. Specifically, for single nucleotide variant calls by CaVEMan, we used CLPM == 0 and ASMD &gt;= 140. To reduce false positive calls by Pindel, we used QUAL &gt;= 250 and REP &lt; 10. Rearrangements were not assessed as they were too few to be informative. A filter for variant allele frequency (&gt; 0.2) was applied to substitutions and indels. De novo substitutions and indels in subclones were obtained by subtracting from respective parental clone whenever available, or by removing mutations shared among subclones.

TwinStrand duplex sequencing data were analysed with the TwinStrand DuplexSeq Mutagenesis App, hosted on DNAnexus. The Mutagenesis App performed error-correction and generated Duplex Consensus alignment and variant calls for both germline and ultra-rare somatic variants. Only variants with variant allele frequency &lt; 0.01 were considered to be the result of mutagenesis (i.e., mutation), and included for subsequent mutation burden and signature analysis. Provided here are the mutation calls from both iPS and HAP1 cells.
DOI: 10.6084/m9.figshare.22132127.v1
title: Daily PTEC Model Based on RBF Neural Network‐Kriging Method

description: The daily PTEC model is constructed by the RBF-Kr method using the COSMIC GPS observations during the low (2009) and high (2013) solar activity years. It has been published in Space Weather(AGU). How to cite this article: Shi, Q., Jin, S., & Li, L. (2023). Daily plasmaspheric TEC variations from COSMIC GPS observations based on RBF neural network‐kriging method. <em>Space Weather</em>, 21, e2022SW003347. https://doi.org/10.1029/2022SW003347
DOI: 10.6084/m9.figshare.23566224.v1
title: MD-ligand-receptor input trajectory best pose

description: The biological system was chosen as the test case for MD-ligand-receptor, considering the pivotal role of camptothecin venom (CPT) as a chemotherapeutic drug targeting human Topoisomerase I (hTop1p). Human Topoisomerase I is an essential enzyme involved in DNA relaxation, and its inhibition by CPT leads to DNA replication disruption and activation of apoptotic response in cancer cells during the S phase of the cell cycle. <br> The reversible CPT inhibitor was initially extracted from the crystal structure and subsequently reinserted into the receptor. This was carried out in order to perform a molecular docking simulation, and , therefore, providing us with the best pose used as the starting structure for the molecular dynamics simulation.
DOI: 10.6084/m9.figshare.24448948.v1
title: BWF FULL RESEARCH DATA

description: Effect Of 8 Weeks Badminton Session on Cardiovascular and Neuromuscular Functions among Older Adults in the United Arab Emirates
DOI: 10.6084/m9.figshare.27133875.v2
title: Flow cytometry analysis of BW25113 containing various versions of BAC or pUC19.

description: Flow cytometry analysis of BW25113 containing various versions of BAC or pUC19. Results show that only ddp-BAC::<i>gfp</i> exhibited a bimodal distribution. The x-axis represents the fluorescence intensity in arbitrary units (a.u.) on a logarithmic scale, and the y-axis represents the count of cells.
DOI: 10.6084/m9.figshare.c.3471585_d63.v1
title: Finokalia, Crete, particle number concentration, 2014-2015

description: particle number concentration, Finokalia, Crete, 2014-2015
DOI: 10.6084/m9.figshare.13235201.v1
title: Howler Monkey database

description: Database used in the study<br>
DOI: 10.6084/m9.figshare.14237345.v1
title: Supplementary Material for: Bidirectional Association between Psoriasis and Atopic Dermatitis: A Nationwide Population-Based Cohort Study

description: <b><i>Background:</i></b> There have been some reports on the coexistence of psoriasis and atopic dermatitis; however, the longitudinal relationship between these two diseases remains unclear. <b><i>Objective:</i></b> This study aimed to investigate the bidirectional association between psoriasis and atopic dermatitis. <b><i>Methods:</i></b> This cohort study recruited patients from the National Health Insurance Research Database in Taiwan. We included 8,206 patients with psoriasis and 32,824 matched controls to assess the risk of atopic dermatitis and 25,743 patients with atopic dermatitis and 102,972 matched controls to assess the risk of psoriasis. Cox regression model was used for the analyses. <b><i>Results:</i></b> After adjusting for potential confounders, patients with psoriasis had a higher risk of atopic dermatitis (adjusted hazard ratio [aHR] 13.01; 95% CI 10.23–16.56) than the controls. Patients with atopic dermatitis had a higher risk of psoriasis (aHR 10.37; 95% CI 6.85–15.69) than the controls. Stratified analyses revealed similar results in both sexes and all age groups. <b><i>Conclusion:</i></b> Our study demonstrated a bidirectional association between psoriasis and atopic dermatitis, suggesting that psoriasis and atopic dermatitis are not mutually exclusive and may share some biological mechanisms.
DOI: 10.17632/9n3vxbwyhb
title: Hair Pull Test: A clinical update for patients with Asian- and Afro-textured hair

description: Supplement 1. A visual representation of the data cleaning process that took place prior to analysis. The participants were excluded based on predetermined exclusion criteria. *It was unclear if the participants who did not document an age met the predetermined inclusion criteria of age &gt;18 years old. Supplement 2. Questionnaire used to collect demographic and hair health data.
DOI: 10.6084/m9.figshare.16860580.v1
title: Dataset of Questionnaire Response of the Business Performance Model for 150 MSMEs during COVID-19

description: This file contains 150 MSMEs response related to the business performance research model. There are four variables include in the study: social media adoption, e-commerce, entrepreneurial orientation, and business performance. The research model has seven hypotheses to be examined.
DOI: 10.6084/m9.figshare.7967297.v1
title: IEEE system impedance

description: Dataset for the ariticle "The Power Flow Calculation Based on Local Controller Impedance Features for the AC Microgrid With Distributed Generations".
DOI: 10.6084/m9.figshare.97204.v4
title: Rhizotrons blueprints

description: Blueprints for the building of rhizotrons used for light transmission imaging experiments.
DOI: 10.6084/m9.figshare.24278251.v1
title: Supplementary Material for: Postoperative swallowing function in patients with deep neck infection

description: Introduction: Early detection of dysphagia risk, initiating rehabilitation, and resumption of appropriate diet based on swallowing function is important during deep neck infection control. This study aimed to evaluate the extent of cervical abscess development, particularly in the deep neck space, and its relationship to postoperative swallowing function. Methods: A retrospective chart review was performed for all deep neck infection cases treated between April 2015 and April 2021. Deep neck spaces were divided into categories based on computed tomography (CT) findings. Functional Oral Intake Scale (FOIS) scores of 4 or higher was defined as normal or slight swallowing disorder, and 3 or lower as dysphagia. Results: 17 cases were included in the analysis. Based on FOIS, 14 cases were classified into the dysphagia group at 2 weeks after surgery, 11 cases at 4 weeks, and 8 cases at 8 weeks. There was no significant difference between the location of the abscess and dysphagia at 2 weeks after surgery. Patients with anterior cervical space abscess significantly increased dysphagia 4 weeks (p= 0.018) and 8 weeks (p= 0.036) after surgery. Conclusion: Abscess formation in the anterior cervical space may be associated with prolonged dysphagia after treatment due to inflammation and scarring of the muscles associated with swallowing.
DOI: 10.6084/m9.figshare.25193018.v1
title: <b>Forest management affects the functional traits of birds and mammals differently</b>

description: The dataset contains necessary files to replicate the analyses in the article: Dri, G. F., Hunter M., Rolek, B., Evans, B. & Mortelliti, A. (2024). Forest management affects the functional traits of birds and mammals differently. Currently submitted for publication.Bird data is available at https://doi.org/10.5066/F76Q1W53Please contact the authors if you would like to collaborate on a project using these data. If additional comments or questions arise, please contact Gabriela Franzoi Dri (gabriela.franzoi@maine.edu) or Alessio Mortelliti (alessio.mortelliti@maine.edu).
DOI: 10.6084/m9.figshare.27216057.v1
title: Dataset XP2

description: Dataset for XP2
DOI: 10.6084/m9.figshare.21695165.v1
title: Supplementary Material for: Predictive Intelligent Control of Oxygenation in Preterm Infants: A Two-Center Feasibility Study

description: <b><i>Introduction:</i></b> Supplemental oxygen therapy is a mainstay of modern neonatal intensive care for preterm infants. However, both insufficient and excess oxygen delivery are associated with adverse outcomes. Automated or closed loop FiO<sub>2</sub> control has been developed to keep SpO2 within a predefined target range more effectively. <b><i>Methods:</i></b> The aim of this study was to investigate the feasibility of closed loop FiO<sub>2</sub> control by Predictive Intelligent Control of Oxygenation (PRICO) on the Fabian ventilator in maintaining SpO2 within a target range (88/89-95%) in preterm infants on different modes of invasive and noninvasive respiratory support. In two tertiary neonatal intensive care units, preterm infants with an FiO<sub>2</sub> &gt;0.21 were included and received an 8 h nonblinded treatment period of closed loop FiO<sub>2</sub> control by PRICO, flanked by two 8 h control periods of routine manual control (RMC1 and RMC2). <b><i>Results:</i></b> 32 preterm infants were included (median gestational age 26 + 5 weeks [IQR 25 + 5–27 + 6], median birthweight 828 grams [IQR 704–930]). Six patients received invasive respiratory support, while 26 received noninvasive respiratory support (18 CPAP, 4 DuoPAP, and 4 nasal IMV). The time percentage within the SpO2 target range was increased with PRICO (74.4% [IQR 67.8–78.5]) compared to RMC1 (65.8% [IQR 51.1–77.8]; <i>p</i> = 0.011) and RMC2 (60.6% [IQR 56.2–66.6]; <i>p</i> &lt; 0.001) with an estimated median difference of 6.0% (95% CI 1.2–11.5) and 9.8% (95% CI 6.0–13.0), respectively. <b><i>Conclusion:</i></b> In preterm infants on invasive and noninvasive respiratory supports, closed loop FiO<sub>2</sub> control by PRICO compared to RMC is feasible and superior in maintaining SpO2 within target ranges.
DOI: 10.17632/x5zrcn3rjf
title: Cash Transfer and Adolescent Life-Course Survey

description: The Cash Transfer and Adolescent Life-course Survey (CTALS) is a bespoke survey conducted in Nepal in 2017 as part of a mixed-methods PhD thesis examining the effects of an unconditional cash transfer, Nepal's Old Age Allowance (OAA), on the life-course circumstances of adolescents who co-reside with elders. The CTALS was designed to exploit expected discontinuities in outcomes of co-resident adolescents at the age of eligibility for the OAA and includes 2,018 households with 3,487 adolescents and 2,454 elders. The survey modules include: (A) Basic interview information (B) Household questionnaire including household roster and member characteristics (C) Assets and services (D) Livelihoods, income, debt and expenditure (E) Parent questionnaire covering adolescent migration, education, time allocation, and marriage (F) Adolescent questionnaire covering migration, education, time allocation, and marriage; (G) Elder person questionnaire covering the OAA and role in decision-making. The survey was designed to answer the following research questions: How does Nepal’s Old Age Allowance (OAA) change decision-making about adolescents’ life-course circumstances in multi-generational households? - What are the gendered effects of OAA income on adolescents’ education, work, marriage timing? - What are the pathways through which the OAA affects adolescents’ life-course circumstances? - How is OAA income factored into households’ decision-making about adolescent life-course options? The main findings show that the OAA supports households to fulfil existing preferences for adolescents, which depend on the socioeconomic status, decision-making dynamics and religion of the household, the type and quality of local schools, the nature of local credit markets, and gendered social norms and expectations attached to transitions to adulthood. For many adolescents, this means increased access to school, including public, private, and religious school. However, some households support adolescents to access private school by taking loans in anticipation of OAA eligibility but fail to sustain the costs in the face of delays in registration and receipt of the first payments. Some out-of-school adolescents are prevented from engaging in paid work. However, other households use the OAA to accelerate transitions to adulthood, supporting economic migration of older boys and expediting the formalisation of marriage of older girls. The research proposal underwent ethics review at the London School of Economics (LSE). At the time, no non-medical research ethics review process was available in Nepal. The author sought guidance on ethics from Tribhuvan University and the wider research and development community; and obtained relevant permissions from central and local government.
DOI: 10.6084/m9.figshare.14237702.v1
title: Data used in the analyses shown in Fig. 7 of "Biogeography of global drylands"

description: Database used in the variation partitioning analyses showing the relative proportion of variation explained from major predictors of plant-plant interactions. These analyses are shown in Fig. 7 of the article Maestre et al. 2021. Biogeography of global drylands. New Phytologist, doi: 10.1111/nph.17395. <br>