cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh3347431.08fu
title: SH3347431.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3347432.08fu
title: SH3347432.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3347433.08fu
title: SH3347433.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3347434.08fu
title: SH3347434.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3347435.08fu
title: SH3347435.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh3347436.08fu
title: SH3347436.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.22179071.v2
title: Supplementary material of the project "Understanding the role of ectopic recombination of subtelomeres in the generation of antigenic gene diversity in Plasmodium parasites"

description: <strong>Supplementary material datasets: </strong> <strong>Dataset 1:</strong> Database for phylogenetic reconstruction of the genus <em>Plasmodium.</em> <strong>Dataset 2:</strong> Trees of the genus <em>Plasmodium</em> generated with six phylogenetic tools (Majority-rule consensus tree of the 6 trees obtained). <strong>Dataset 3:</strong> Database for chromosome mapping of gene conservation. <strong>Dataset 4:</strong> Classification of gene families (with the highest number of sequences in young regions) based on the nature of its products. <strong>Supplementary material 1:</strong> <strong>Table S1: </strong> Criteria to define the four levels in which <em>Plasmodium</em> species are classified based on evidence of the intensity of production of antigenic diversity through ectopic recombination. <strong>Table S2:</strong> Number of species present in each major clade and in their respective minor clades. <strong>Figure S1:</strong> Proportion of species-specific or young genes excluded from chromosome mapping analysis. <strong>Supplementary material 2: </strong> Chromosome maps showing the gene conservation profile, presence of young regions, and distribution of antigenic genes in 19 <em>Plasmodium</em> species. <em>P. adleri</em> (Page 1) <em>P. berghei </em>(Page 2) <em>P. billcollinsi</em> (Page 3) <em>P. blacklocki</em> (Page 4) <em>P. chabaudi</em> chabaudi (Page 5) <em>P. coatneyi </em>(Page 6) <em>P. cynomolgi </em>(Page 7) <em>P. falciparum</em> (Page 8) <em>P. gaboni </em>(Page 9) <em>P. knowlesi</em> (Page 10) <em>P. malariae</em> (Page 11) <em>P. ovale curtisi </em>(Page 12) <em>P. praefalciparum</em> (Page 13) <em>P. reichenowi</em> (Page 14) <em>P. relictum</em> (Page 15) <em>P. vivax-like</em> (Page 16) <em>P. vivax</em> (Page 17) <em>P. vinckei vinckei</em> (Page 18) <em>P. yoelii yoelii </em>(Page 19)
DOI: 10.5517/ccdc.csd.cc1lq0nz
title: CCDC 1480921: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lq0lx
title: CCDC 1480919: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lq0s3
title: CCDC 1480925: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lq0t4
title: CCDC 1480926: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc1lq0x7
title: CCDC 1480929: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc20n2d5
title: CCDC 1866336: Experimental Crystal Structure Determination

description: Related Article: Zhaoyun Wang, Xing Guo, Zhengxin Kang, Qinghua Wu, Heng Li, Cheng Cheng, Changjiang Yu, Lijuan Jiao, Erhong Hao|2023|Org.Lett.|25|744|doi:10.1021/acs.orglett.2c04184
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc28hxj7
title: CCDC 2100669: Experimental Crystal Structure Determination

description: Related Article: Chenming Chan, Jia Li, Jianwei Wu, Youchun Zi, Zhaoli Xue, Mahlatse Ledwaba, John Mack, Tebello Nyokong|2023|Dyes Pigm.|213|111172|doi:10.1016/j.dyepig.2023.111172
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.3886/e167081v2-133021
title: Code for: Measuring Racial Discrimination in Bail Decisions

description: We develop new quasi-experimental tools to measure disparate impact, regardless of its source, in the context of bail decisions. We show that omitted variables bias in pretrial release rate comparisons can be purged by using the quasi-random assignment of judges to estimate average pretrial misconduct risk by race. We find that two-thirds of the release rate disparity between white and Black defendants in New York City is due to the disparate impact of release decisions. We then develop a hierarchical marginal treatment effect model to study the drivers of disparate impact, finding evidence of both racial bias and statistical discrimination.<br><br>These materials provide the code to estimate the results in the paper.
description: Universe of arraignments in New York City between November 1, 2008 to November 1, 2013. Smallest Geographic Unit: borough within New York City
DOI: 10.5281/zenodo.7677759
title: scatophagus_argus_CSIRO1_decontaminated_FSCR.fasta.gx

description: .
DOI: 10.5281/zenodo.7677758
title: scatophagus_argus_CSIRO1_decontaminated_FSCR.fasta.gx

description: .
DOI: 10.5281/zenodo.7677761
title: Tidal channel formation in a rapidly invaded micro-tidal marsh: the role of dynamic vegetation pattern and concurrent channel deepening

description: The channel formation during the spartina alterniflora invasion influenced by vegetation pattern dynamic and concurrent channel deepening.
DOI: 10.5281/zenodo.7677760
title: Tidal channel formation in a rapidly invaded micro-tidal marsh: the role of dynamic vegetation pattern and concurrent channel deepening

description: The channel formation during the spartina alterniflora invasion influenced by vegetation pattern dynamic and concurrent channel deepening.
DOI: 10.5281/zenodo.7677766
title: Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato

description: Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato (1135884)
description: We want to publish data only after publishing the manuscript
DOI: 10.5281/zenodo.7677765
title: Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato

description: Molecular mapping of quantitative trait loci (QTL) for resistance to early blight in tomato (1135884)
description: We want to publish data only after publishing the manuscript
DOI: 10.34740/kaggle/dsv/5064963
title: arXiv Dataset
DOI: 10.25345/c5599zb6j
title: MassIVE MSV000091365 - GNPS - carmaphycin liver microcosm metabolism
title: Standards of carmaphycin analogs and time series samples of liver microcosm metabolism
DOI: 10.6084/m9.figshare.22179149
title: Collected Data

description: This dataset contains all data collected during the study, "How Are Different Asynchronous Programming Constructs in JavaScript Related to Software Quality? A Repository Mining Study on GitHub".
DOI: 10.6084/m9.figshare.22179149.v1
title: Collected Data

description: This dataset contains all data collected during the study, "How Are Different Asynchronous Programming Constructs in JavaScript Related to Software Quality? A Repository Mining Study on GitHub".
DOI: 10.5281/zenodo.7677794
title: Targeted Illumination in HeLa Cells

description: Files are a time series of showing targeted illumination of a subset of HeLa cell nuclei containing a photolabile ATAC-seq library. Time points are 300 ms apart. The single-channel images were acquired using a spinning disk confocal with a 40X objective (Nikon MRD77410) using a 561 nm laser line and 525/36 emission filter (MVI, 77074803). Images were captured using a Zyla 2.3 PLUS sCMOS camera. The pixel value represents the fluorescence intensity of the photocleavable fluorophore attached to the fragment library. Images are acquired concurrently with targeted illumination using a 405 nm laser line.
DOI: 10.5281/zenodo.7677793
title: Targeted Illumination in HeLa Cells

description: Files are a time series of showing targeted illumination of a subset of HeLa cell nuclei containing a photolabile ATAC-seq library. Time points are 300 ms apart. The single-channel images were acquired using a spinning disk confocal with a 40X objective (Nikon MRD77410) using a 561 nm laser line and 525/36 emission filter (MVI, 77074803). Images were captured using a Zyla 2.3 PLUS sCMOS camera. The pixel value represents the fluorescence intensity of the photocleavable fluorophore attached to the fragment library. Images are acquired concurrently with targeted illumination using a 405 nm laser line.
DOI: 10.34740/kaggle/dsv/5064940
title: Goodreads All Time Greatest Books 8k Data
DOI: 10.6084/m9.figshare.22179071.v3
title: Supplementary material of the project "Understanding the role of ectopic recombination of subtelomeres in the generation of antigenic gene diversity in Plasmodium parasites"

description: <strong>Supplementary material datasets: </strong> <strong>Dataset 1:</strong> Database for phylogenetic reconstruction of the genus <em>Plasmodium.</em> <strong>Dataset 2:</strong> Trees of the genus <em>Plasmodium</em> generated with six phylogenetic tools (Majority-rule consensus tree of the 6 trees obtained). <strong>Dataset 3:</strong> Database for chromosome mapping of gene conservation. <strong>Dataset 4:</strong> List of predominant gene families in young regions per species. <strong>Dataset 5: </strong>Classification of gene families (with the highest number of sequences in young regions) based on the nature of its products. <strong>Supplementary material 1:</strong> <strong>Table S1: </strong> Criteria to define the four levels in which <em>Plasmodium</em> species are classified based on evidence of the intensity of production of antigenic diversity through ectopic recombination. <strong>Table S2:</strong> Number of species present in each major clade and in their respective minor clades. <strong>Figure S1:</strong> Proportion of species-specific or young genes excluded from chromosome mapping analysis. <strong>Supplementary material 2: </strong> Chromosome maps showing the gene conservation profile, presence of young regions, and distribution of antigenic genes in 19 <em>Plasmodium</em> species. <em>P. adleri</em> (Page 1) <em>P. berghei </em>(Page 2) <em>P. billcollinsi</em> (Page 3) <em>P. blacklocki</em> (Page 4) <em>P. chabaudi</em> chabaudi (Page 5) <em>P. coatneyi </em>(Page 6) <em>P. cynomolgi </em>(Page 7) <em>P. falciparum</em> (Page 8) <em>P. gaboni </em>(Page 9) <em>P. knowlesi</em> (Page 10) <em>P. malariae</em> (Page 11) <em>P. ovale curtisi </em>(Page 12) <em>P. praefalciparum</em> (Page 13) <em>P. reichenowi</em> (Page 14) <em>P. relictum</em> (Page 15) <em>P. vivax-like</em> (Page 16) <em>P. vivax</em> (Page 17) <em>P. vinckei vinckei</em> (Page 18) <em>P. yoelii yoelii </em>(Page 19)
DOI: 10.5281/zenodo.7677812
title: Images of H3K9me3 Immunostain in IMR90 Cells

description: Files are two-channel images at 49 unique xy positions showing the fluorescence intensity of a DRAQ5 DNA stain (c1) and H3K9me3 immunostain with an Alexa488 secondary (c2). Imaging was performed using a Nikon Ti2-E inverted microscope equipped with a Yokogawa CSU-W1 confocal spinning disk unit and a Zyla 2.3 PLUS sCMOS camera. We used 488 nm and 647 nm laser lines paired with 525/36 (MVI, 77074803), and 705/72 (MVI, 77074329) emission filters, respectively. Samples were imaged through a 1.15 NA CFI Apo LWD Lambda S 40X water immersion objective lens (Nikon MRD77410). The imagining system was controlled by NIS-Elements AR software.
DOI: 10.5281/zenodo.7677813
title: Images of H3K9me3 Immunostain in IMR90 Cells

description: Files are two-channel images at 49 unique xy positions showing the fluorescence intensity of a DRAQ5 DNA stain (c1) and H3K9me3 immunostain with an Alexa488 secondary (c2). Imaging was performed using a Nikon Ti2-E inverted microscope equipped with a Yokogawa CSU-W1 confocal spinning disk unit and a Zyla 2.3 PLUS sCMOS camera. We used 488 nm and 647 nm laser lines paired with 525/36 (MVI, 77074803), and 705/72 (MVI, 77074329) emission filters, respectively. Samples were imaged through a 1.15 NA CFI Apo LWD Lambda S 40X water immersion objective lens (Nikon MRD77410). The imagining system was controlled by NIS-Elements AR software.
DOI: 10.5281/zenodo.7677827
title: Images of H3K9me3 Immunostain in IMR90 Cells

description: Files are two-channel images at 49 unique xy positions showing the fluorescence intensity of a DRAQ5 DNA stain (c1) and H3K9me3 immunostain with an Alexa488 secondary (c2). Imaging was performed using a Nikon Ti2-E inverted microscope equipped with a Yokogawa CSU-W1 confocal spinning disk unit and a Zyla 2.3 PLUS sCMOS camera. We used 488 nm and 647 nm laser lines paired with 525/36 (MVI, 77074803), and 705/72 (MVI, 77074329) emission filters, respectively. Samples were imaged through a 1.15 NA CFI Apo LWD Lambda S 40X water immersion objective lens (Nikon MRD77410). The imagining system was controlled by NIS-Elements AR software.
DOI: 10.34740/kaggle/dsv/5065151
title: Goodreads All Time Greatest Books 8k Data
DOI: 10.5517/ccdc.csd.cc2db0tl
title: CCDC 2214169: Experimental Crystal Structure Determination

description: Related Article: Hidenori Matsuyama, Xuan Zhang, Masahiro Terada, Tienan Jin|2023|Org.Lett.|25|800|doi:10.1021/acs.orglett.2c04307
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dyhql
title: CCDC 2232890: Experimental Crystal Structure Determination

description: Related Article: Alexander Yu. Mitrofanov, Irina P. Beletskaya|2023|J.Org.Chem.|88|2367|doi:10.1021/acs.joc.2c02780
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.