cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3793122
title: PowerPoint Slides for: Long-Term Outcomes in Patients with Very-Early Onset Autosomal Dominant Polycystic Kidney Disease

description: <i>Background:</i> Long-term clinical outcomes in children with very-early onset (VEO; diagnosis in utero or within the first 18 months of life) autosomal dominant polycystic kidney disease (ADPKD) are currently not well understood. We conducted a longitudinal retrospective cohort study to assess the association between VEO status and adverse clinical outcomes. <i>Methods:</i> Seventy patients with VEO-ADPKD matched (by year of birth, sex and race/ethnicity) to 70 patients with non-VEO-ADPKD who participated in research at the University of Colorado were studied. Kaplan-Meier survival analysis was performed. The predictor was VEO status, and outcomes were progression to end-stage renal disease (ESRD), development of hypertension, progression to estimated glomerular filtration rate (eGFR &lt;90 ml/min/1.73 m2), glomerular hyperfiltration (eGFR ≥140 ml/min/1.73 m2) and height-adjusted total kidney volume (htTKV) measured by MRI ≥600 ml/m. <i>Results:</i> Median follow-up was until 16.0 years of age. There were only 4 ESRD events during the follow-up period, all in the VEO group (p &lt; 0.05). VEO patients were more likely to develop hypertension (hazard ratio, HR 3.15, 95% CI 1.86-5.34; p &lt; 0.0001) and to progress to eGFR &lt;90 ml/min/1.73 m2 (HR 1.97, 95% CI 1.01-3.84; p &lt; 0.05) than non-VEO patients. There was no difference between groups in the development of glomerular hyperfiltration (HR 0.89, 95% CI 0.56-1.42; p = 0.62). There were only 7 patients who progressed to htTKV ≥600 ml/m, 4 in the VEO group and 3 in the non-VEO group (p &lt; 0.01). <i>Conclusions:</i> Several clinical outcomes are worse in patients with VEO-ADPKD compared to non-VEO ADPKD. Children with VEO-ADPKD represent a particularly high-risk group of ADPKD patients.
DOI: 10.6084/m9.figshare.3793122.v1
title: PowerPoint Slides for: Long-Term Outcomes in Patients with Very-Early Onset Autosomal Dominant Polycystic Kidney Disease

description: <i>Background:</i> Long-term clinical outcomes in children with very-early onset (VEO; diagnosis in utero or within the first 18 months of life) autosomal dominant polycystic kidney disease (ADPKD) are currently not well understood. We conducted a longitudinal retrospective cohort study to assess the association between VEO status and adverse clinical outcomes. <i>Methods:</i> Seventy patients with VEO-ADPKD matched (by year of birth, sex and race/ethnicity) to 70 patients with non-VEO-ADPKD who participated in research at the University of Colorado were studied. Kaplan-Meier survival analysis was performed. The predictor was VEO status, and outcomes were progression to end-stage renal disease (ESRD), development of hypertension, progression to estimated glomerular filtration rate (eGFR &lt;90 ml/min/1.73 m2), glomerular hyperfiltration (eGFR ≥140 ml/min/1.73 m2) and height-adjusted total kidney volume (htTKV) measured by MRI ≥600 ml/m. <i>Results:</i> Median follow-up was until 16.0 years of age. There were only 4 ESRD events during the follow-up period, all in the VEO group (p &lt; 0.05). VEO patients were more likely to develop hypertension (hazard ratio, HR 3.15, 95% CI 1.86-5.34; p &lt; 0.0001) and to progress to eGFR &lt;90 ml/min/1.73 m2 (HR 1.97, 95% CI 1.01-3.84; p &lt; 0.05) than non-VEO patients. There was no difference between groups in the development of glomerular hyperfiltration (HR 0.89, 95% CI 0.56-1.42; p = 0.62). There were only 7 patients who progressed to htTKV ≥600 ml/m, 4 in the VEO group and 3 in the non-VEO group (p &lt; 0.01). <i>Conclusions:</i> Several clinical outcomes are worse in patients with VEO-ADPKD compared to non-VEO ADPKD. Children with VEO-ADPKD represent a particularly high-risk group of ADPKD patients.
DOI: 10.6084/m9.figshare.3793107
title: Supplementary Material for: The Effect of Exercise Training Intensity on Quality of Life in Heart Failure Patients: A Systematic Review and Meta-Analysis

description: <i>Objectives:</i> To establish if exercise training intensity produces different effect sizes for quality of life in heart failure. <i>Background:</i> Exercise intensity is the primary stimulus for physical and mental adaptation. <i>Methods:</i> We conducted a MEDLINE search (1985 to February 2016) for exercise-based rehabilitation trials in heart failure using the search terms ‘exercise training', ‘left ventricular dysfunction', ‘peak VO2', ‘cardiomyopathy', and ‘systolic heart dysfunction'. <i>Results:</i> Twenty-five studies were included; 4 (16%) comprised high-, 10 (40%) vigorous-, 9 (36%) moderate- and 0 (0%) low-intensity groups; two studies were unclassified. The 25 studies provided a total of 2,385 participants, 1,223 exercising and 1,162 controls (36,056 patient-hours of training). Analyses reported significant improvement in total Minnesota living with heart failure (MLWHF) total score [mean difference (MD) -8.24, 95% CI -11.55 to -4.92, p &lt; 0.00001]. Physical MLWHF scorewas significantly improved in all studies (MD -2.89, 95% CI -4.27 to -1.50, p &lt; 0.00001). MLWHF total score was significantly reduced after high- (MD -13.74, 95% CI -21.34 to -6.14, p = 0.0004) and vigorous-intensity training (MD -8.56, 95% CI -12.77 to -4.35, p &lt; 0.0001) but not moderate-intensity training. A significant improvement in the total MLWHF score was seen after aerobic training (MD -3.87, 95% CI -6.97 to -0.78, p = 0.01), and combined aerobic and resistance training (MD -9.82, 95% CI -15.71 to -3.92, p = 0.001), but not resistance training. <i>Conclusions:</i> As exercise training intensity rises, so may the magnitude of improvement in quality of life in exercising patients. Aerobic-only or combined aerobic and resistance training may offer the greatest improvements in quality of life.
DOI: 10.6084/m9.figshare.3793104
title: Supplementary Material for: A Systematic Review and Meta-Analysis of Kidney and Pregnancy Outcomes in IgA Nephropathy

description: <i>Background:</i> The outcomes of pregnancy in immunoglobulin A nephropathy (IgAN) remain controversial. We sought to evaluate the effect of pregnancy on the progression of IgAN as well as the impact of IgAN on pregnancy outcomes. <i>Methods:</i>We systematically searched MEDLINE, Embase for cohort or case-control studies. OR reductions were calculated with a random-effects model, and kidney outcomes and adverse pregnancy events were analyzed. <i>Results:</i> Our literature search returned 652 relevant articles; 4 studies were included, providing data of 376 pregnancies in 273 patients with IgAN and that of 241 IgAN who did not become pregnant. Four hundred sixty seven patients with chronic kidney disease stages 1-2 were included. Pregnancy in patients with IgAN did not increase the risk of adverse renal events including doubling of serum creatinine, 50% decline in glomerular filtration rate (GFR) and end-stage kidney disease (OR 0.97, 95% CI 0.55-1.70; p = 0.90; I2 = 0.0%, p = 0.79). There was no significant difference in the change in estimated GFR at the end of follow-up in the pregnant and non-pregnant groups (weighted mean difference 0.1 ml/min/1.73 m2 (95% CI -4.85 to 5.04 ml/min/1.73 m2), p = 0.97; I2 = 0%, p = 0.95). Women with IgAN had high rates of infant loss (12.2, 7.4-19.4%), preterm delivery (8.5, 5.9-12.1%), low birth weight (9.5, 6.7-13.3%), and preeclampsia/severe preeclampsia (7.3, 4.9-10.6%). <i>Conclusions:</i> Pregnancy in IgAN patients with preserved kidney function did not accelerate deterioration of renal function. But pregnant women with IgAN are at higher risk of pregnancy complications.
DOI: 10.6084/m9.figshare.3792972
title: Redefining the invertebrate RNA virosphere

description: Virus genome sequences (fasta), alignment (fasta), and phylogenetic trees (newick)
DOI: 10.6084/m9.figshare.3792960
title: Skeletal indicators of ecological specialization in pika (Mammalia, Ochotonidae)

description: Measurement data from-- <br>Reese, AT, HC Lanier, and EJ Sargis. 2013 Skeletal indicators of ecological specialization in pika (Mammalia, Ochotonidae).<i> Journal of Morphology </i>274: 585-602<br><br><br>Pika species generally fall into two ecotypes, meadow-dwelling (burrowing) or talus-dwelling, a classification that distinguishes a suite of different ecological, behavioral, and life history traits. Despite these differences, little morphological variation has previously been documented to distinguish among ecotypes. The aim of this study was to test whether postcranial features related to burrowing are present in meadow-dwelling species and whether talus-dwelling species exhibit postcranial modifications related to frequent leaping between rocks. To test this, the scapula, humerus, ulna, radius, innominate, femur, tibia, and calcaneus of 15 species were studied and measured. Twenty-three measurements were taken on 199 skeletons, and 19 indices were constructed from these measurements. Indices were compared between the two ecotypes using Student's t-test. Comparisons among ecotypes, species, and subgenera were made using one-way ANOVA with the Tukey honest significant difference post hoc test. Multivariate results were generated using principal components analyses. Thirteen forelimb and hind limb indices proved significant in distinguishing the meadow-dwelling, talus-dwelling, and intermediate forms. A number of these indices are associated with burrowing or leaping in other mammals, providing some support for the hypothesis that postcranial modifications in pika are related to locomotor differences. This evidence of morphological responses to ecological specialization will be useful for reconstructing the paleobiology of extinct taxa, assessing the behavioral variability of extant species, and improving our understanding of the evolutionary history of pikas.<br>
DOI: 10.6084/m9.figshare.3792936.v1
title: The Location of Papers in Topic Spacetime

description: Talk given by Tim Evans as part of the COST Action TD1210 Knowescape http://knowescape.org/ workshop on “Identification, location and temporal evolution of topics”. Held at the Library and Information, Centre of the Hungarian, Academy of Sciences, Arany János st. 1, 1051, Budapest, 29-30 August 2016 For “Identification, location and temporal evolution of topics” meeting, Budapest August 29-30, 2016. Part of COST Action TD1210 Knowescape, and the FP7 Project Impact-EV. Title: The Location of Papers in Topic Space-Time. Abstract: Many standard tools for the analysis of large data sets place data points in a natural space measuring distance in the intuitive way we use every day. However publications are characterised both by a position in some topic space and by a publication date. This suggests that we should use analysis tools which are aware of time and the difference in the geometry of space and time. Mathematics shows that the change from the simple spaces underlying traditional data analysis tools to space-times involves a fundamental change to the geometry which in turn brings new types of distance measures. I will show how we have adapted standard MDS (Multi-Dimensional Scaling) methods to take account of the direction of time allowing us to estimate the time and space location of vertices in a citation network (or any directed acyclic graph) from the network connections alone. I will use simple toy models to demonstrate the effectiveness of the method. I will then use our method to assign space and time coordinates to papers in an arXiv.org citation network which will reveal both topics and their evolution in a natural way. <br>
DOI: 10.6084/m9.figshare.3792930
title: Sloutsky and Naegle, High-resolution SDP Identification

description: Python module implementing group-conservation-weighted<br>specificity determining position (SDP) scoring.<br><br>Specificity group definitions, reference sequences, and sub-sampled alignment sets for AscG, CcpA, FruR, LacI, PurR, TreR specificity groups of the LacI bacterial transcription factor family.<br><br>
DOI: 10.6084/m9.figshare.3792930.v1
title: Sloutsky and Naegle, High-resolution SDP Identification

description: Python module implementing group-conservation-weighted<br>specificity determining position (SDP) scoring.<br><br>Specificity group definitions, reference sequences, and sub-sampled alignment sets for AscG, CcpA, FruR, LacI, PurR, TreR specificity groups of the LacI bacterial transcription factor family.<br><br>
DOI: 10.6084/m9.figshare.3792861
title: The effective torque on patchy spheres nearby a flat substrate induced by infinitely thin rods with adsorptive ends

description: The system studied here is the mixture of infinitely thin rods and a patchy sphere nearby a flat substrate. The adsorption between the rod ends and the patch can induce an effective torque on the sphere, which are studied by the Monte Carlo method. At the proper patch angle, the effective torque makes the patchy surface face away from the substrate, and the effective interaction between the bare surface and the substrate is attractive at the same time. The effective torque strengthens with the approach between the sphere and the substrate, while first strengthens and then weakens with the increase of the included angle between the axis of the patch and the normal of the substrate. The relationships between the effective torque and the adsorptive strength, the patch angle and the diameter of the sphere have also been studied. The effective torque discussed here may play a role in the biological lock-and-key mechanism and be used to adjust the two-dimensional self-assembly of the colloidal particles with the anisotropic surface.
DOI: 10.6084/m9.figshare.3792861.v1
title: The effective torque on patchy spheres nearby a flat substrate induced by infinitely thin rods with adsorptive ends

description: The system studied here is the mixture of infinitely thin rods and a patchy sphere nearby a flat substrate. The adsorption between the rod ends and the patch can induce an effective torque on the sphere, which are studied by the Monte Carlo method. At the proper patch angle, the effective torque makes the patchy surface face away from the substrate, and the effective interaction between the bare surface and the substrate is attractive at the same time. The effective torque strengthens with the approach between the sphere and the substrate, while first strengthens and then weakens with the increase of the included angle between the axis of the patch and the normal of the substrate. The relationships between the effective torque and the adsorptive strength, the patch angle and the diameter of the sphere have also been studied. The effective torque discussed here may play a role in the biological lock-and-key mechanism and be used to adjust the two-dimensional self-assembly of the colloidal particles with the anisotropic surface.
DOI: 10.6084/m9.figshare.3792780
title: Online Supplementary Material for Avian Conservation and Ecology article titled "Direction-of-arrival estimation of animal vocalizations for monitoring animal behavior and improving estimates of abundance".

description: Contained in this fileset are two things. First, the .rar file called Software_SDEer_MatlabVersion.rar contains the SDEer software that can be used for DOA estimation with the hardware outlined in the manuscript. This .rar file contains detailed pdf instructions outlining the use of the SDEer software.<br><br>Second, the .zip file called 3DFiles.zip contains two .stl files. This file type (.stl) is a standard file type for 3D printing. The file MainPart.stl is for printing the main structure of the microphone mount. The file AddPart.stl is for printing the attachment to hold the earbud microphone that emits the synchronization signal to synchronize the four microphones.
DOI: 10.6084/m9.figshare.3792660
title: Hydrocarbon chemical kinetic model survey

description: Figure showing the sizes (numbers of species and reactions) of chemical kinetic models for hydrocarbon fuels, from 1970 to 2016.<br>Also includes the raw data and plotting script, with references.
DOI: 10.6084/m9.figshare.3792660.v1
title: Hydrocarbon chemical kinetic model survey

description: Figure showing the sizes (numbers of species and reactions) of chemical kinetic models for hydrocarbon fuels, from 1970 to 2016.<br>Also includes the raw data and plotting script, with references.
DOI: 10.6084/m9.figshare.3792627
title: allvalues_Calluna.xlsx

description: The published images were analyzed and the obtained values were summarized in the Excel files.For measurement of the anatomical parameters, the software Optimas 6.5 (Media Cybernetics, L.P. Optimas, Rockville, MD) was used.Values were obtained as follows: within a 0.00316 mm<sup>2</sup> area of xylem the number of tracheae and tracheids (n<sub>tt</sub>), the outer diameter (d<sub>tt</sub>), and the cell wall thickness of those xylem elements (t<sub>cw</sub>) were measured. From these values, the ratio of cell wall thickness to cell diameter (r = t<sub>cw</sub>/d<sub>tt</sub>) was calculated. Additionally, the whole xylem area in a cross section (A<sub>x</sub>) was determined by using d<sub>x</sub> and assuming a circular shape of the vascular tissue in a cross section. If pith tissue was present, the area of the pith tissue was subtracted from the xylem area. By knowing A<sub>x</sub> and n<sub>tt</sub> the total number of conducting xylem units in the cross sectional area of xylem (n) was calculated. There were only tracheids found in the transition zone (Z<sub>3</sub>) and the basal part of the pedicel (Z<sub>4</sub>), whose lengths (l<sub>tr</sub>) were measured.
DOI: 10.6084/m9.figshare.3792627.v1
title: allvalues_Calluna.xlsx

description: The published images were analyzed and the obtained values were summarized in the Excel files.For measurement of the anatomical parameters, the software Optimas 6.5 (Media Cybernetics, L.P. Optimas, Rockville, MD) was used.Values were obtained as follows: within a 0.00316 mm<sup>2</sup> area of xylem the number of tracheae and tracheids (n<sub>tt</sub>), the outer diameter (d<sub>tt</sub>), and the cell wall thickness of those xylem elements (t<sub>cw</sub>) were measured. From these values, the ratio of cell wall thickness to cell diameter (r = t<sub>cw</sub>/d<sub>tt</sub>) was calculated. Additionally, the whole xylem area in a cross section (A<sub>x</sub>) was determined by using d<sub>x</sub> and assuming a circular shape of the vascular tissue in a cross section. If pith tissue was present, the area of the pith tissue was subtracted from the xylem area. By knowing A<sub>x</sub> and n<sub>tt</sub> the total number of conducting xylem units in the cross sectional area of xylem (n) was calculated. There were only tracheids found in the transition zone (Z<sub>3</sub>) and the basal part of the pedicel (Z<sub>4</sub>), whose lengths (l<sub>tr</sub>) were measured.
DOI: 10.6084/m9.figshare.3792546
title: Talking out of order: task order and retrieval of grammatical gender and phonology in lexical access

description: Despite early evidence that grammatical gender is retrieved prior to phonology in lexical access, more recent studies demonstrating task effects and non-converging evidence raise doubts about the extent to which this is a general feature of the language production system. We employed the dual-choice go/no-go paradigm with event-related potentials (ERPs) in order to further clarify the time course of retrieval of grammatical gender and phonology. Specifically, we examined how task order influences the relative timing with which these features are retrieved. Results find no clear evidence that grammatical gender is retrieved prior to phonology in a serial manner. Instead, the relative timing with which these features are retrieved is subject to task order, suggesting that prior estimates of lexical access obtained with this paradigm may be confounded by task effects. Overall, our result support parallel access models of feature retrieval during lexical access and suggest that attentional biases may modulate retrieval.
DOI: 10.6084/m9.figshare.3792546.v1
title: Talking out of order: task order and retrieval of grammatical gender and phonology in lexical access

description: Despite early evidence that grammatical gender is retrieved prior to phonology in lexical access, more recent studies demonstrating task effects and non-converging evidence raise doubts about the extent to which this is a general feature of the language production system. We employed the dual-choice go/no-go paradigm with event-related potentials (ERPs) in order to further clarify the time course of retrieval of grammatical gender and phonology. Specifically, we examined how task order influences the relative timing with which these features are retrieved. Results find no clear evidence that grammatical gender is retrieved prior to phonology in a serial manner. Instead, the relative timing with which these features are retrieved is subject to task order, suggesting that prior estimates of lexical access obtained with this paradigm may be confounded by task effects. Overall, our result support parallel access models of feature retrieval during lexical access and suggest that attentional biases may modulate retrieval.
DOI: 10.6084/m9.figshare.3792438.v1
title: SfN 2010 poster

description: This is the poster presented at the 2010 annual meeting of the Society for Neurosciences. It contains some examples of cardiac driven conductances.
DOI: 10.5281/zenodo.4013877
title: FIGURE 2 from paper JVST-B "Formation of CdSe quantum dots from single source precursor obtained by thermal and laser treatment"

description: The dataset includes two files: the word file describes the type of sample and the procedures used to pick up the data; the excel file includes the raw data used to obtain the plots of figure 2. In the following is reported the description of figure 2 as wrote in the paper. Absorption and PL spectra (dashed and straight lines, respectively) of the films produced (a) without any ligand, (b) with OA, and (c) with OAm.
DOI: 10.5281/zenodo.4013876
title: FIGURE 2 from paper JVST-B "Formation of CdSe quantum dots from single source precursor obtained by thermal and laser treatment"

description: The dataset includes two files: the word file describes the type of sample and the procedures used to pick up the data; the excel file includes the raw data used to obtain the plots of figure 2. In the following is reported the description of figure 2 as wrote in the paper. Absorption and PL spectra (dashed and straight lines, respectively) of the films produced (a) without any ligand, (b) with OA, and (c) with OAm.
DOI: 10.21227/xc8z-st69
title: Sample submission

description: Test
DOI: 10.6084/m9.figshare.3792210
title: <i>Papahu</i>-like fossil dolphin from Kaikoura, New Zealand, helps to fill the Early Miocene gap in the history of Odontoceti

description: An early Miocene dolphin (ZMT 73: partial skull and ear bones) from Kaikoura, New Zealand, is the sister taxon to the previously named Early Miocene <i>Papahu taitapu.</i> The new specimen, although insufficient to justify a new species name, includes an informative squamosal and periotic that help move the <i>Papahu</i> clade from the stem Odontoceti to either the Platanistoidea, or to become the sister taxon to the Ziphiidae+Eurhinodelphinidae+Delphinida. The fossils usefully add to the taxonomic and structural diversity of Cetacea during the important but poorly known Early Miocene.