cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/7c2ddd7b75680980d84478011c5fbba9
title: Maple Reproduction and Sap Flow at Harvard Forest since 2011

description: Seed production assures the persistence of tree populations and forest cover over the long-term, and so has long interested plant demographers and foresters. Many forest tree species produce seeds synchronously and at irregular intervals across large areas, a phenomenon known as masting. Initiated in spring 2011, this study addresses the mechanisms of mast seeding in sugar maple (Acer saccharum), and its impact on pollinators, seed consumers, and forest carbon dynamics at the Harvard Forest. We monitor seed production (via counts of seeds on trees), flower production, and resource status (via sap collection) on 20 trees. Pollinator dynamics and seed predation (by weevils) are also monitored. In 2015, we added sap and seed monitoring of red maple (Acer rubrum) trees to explore the hypothesis that this non-masting species would have muted dynamics compared to its masting congener.
DOI: 10.6084/m9.figshare.24774594
title: GreenSoybean_5s_4 _532 nm_3_2__400_x10Vis_600 gr_mm_duo200_01(nm).txt

description: Raman Spectroscopy
DOI: 10.6084/m9.figshare.24774594.v1
title: GreenSoybean_5s_4 _532 nm_3_2__400_x10Vis_600 gr_mm_duo200_01(nm).txt

description: Raman Spectroscopy
DOI: 10.34740/kaggle/dsv/7153834
title: Subway Surfers Speedrun Leaderboards Dataset
DOI: 10.6073/pasta/3628d63e529a99a77959e26cf88e2b3b
title: Detection Probability of Red Wood Ants in Friedenweiler, Germany 2015

description: Estimation of population sizes and species ranges is central to population and conservation biology. It is widely appreciated that imperfect detection of mobile animals must be accounted for when estimating population size from presence-absence data. Sessile organisms also are imperfectly detected, but correction for detection probability in estimating their population sizes is rare. We illustrate challenges of detection probability and population estimation of sessile organisms using censuses of red wood ant (Formica rufa-group) nests as a case study. These ants, widespread in the northern hemisphere, can make large (up to 2m tall), highly visible nests. Using data from a two-day mapping campaign by eight individuals of 147 ant nests spread across sixteen 3600-m2 plots in the Black Forest region of southwest Germany, we developed a Bayesian model for quantifying detection probability of sessile organisms. Detection probabilities by individual observers of red wood ant nests ranged from 0.31 – 0.56, and depended on experience of the observers, size and density of nests, and habitat characteristics. Robust estimation of population density of sessile organisms—even highly apparent ones such as red wood ant nests—requires unbiased estimation of detection probability, just as it does when estimating population density of rare or cryptic species.
DOI: 10.6073/pasta/a1b9f08bc955075cd43e55798ae2fbf9
title: Hemlock Woolly Adelgid and Elongate Hemlock Scale Surveys in Connecticut and Massachusetts 1997-2011

description: In the eastern USA, eastern hemlock (Tsuga canadensis) is the host plant for two invasive insect species - hemlock woolly adelgid (Adelges tsugae) and elongate hemlock scale (Fiorinia externa). We observed the density of adult hemlock woolly adelgid and elongate hemlock scale on eastern hemlock branches on five occasions over 14 years at 142 stands across a latitudinal transect encompassing 7,500 km2 in Connecticut and Massachusetts to assess whether there is a difference in the response to abiotic conditions (winter temperature, summer temperature, summer precipitation) between the two species, and whether the distribution and abundance of each insect species is dependent on biotic interactions with the co-occurring insect species.
DOI: 10.6084/m9.figshare.24775692.v1
title: YellowGreenSoybean

description: Raman Spectroscopy
DOI: 10.6084/m9.figshare.24775692
title: YellowGreenSoybean

description: Raman Spectroscopy
DOI: 10.15482/usda.adc.24712827
title: Data from: Expansion of Proteome-wide <i>Coxiella burnetii </i>Comparative T-cell Epitope Prediction to Include Small Ruminant Hosts

description: T-cell epitopes represent sampled environmental- and self-peptides loaded into major histocompatibility complex (MHC) proteins. Bioinformatic tools have been produced to predict these interactions for many species, providing peptides of interest in vaccine development studies.Prior work by the researchers (DOI: 10.1186/s12859-021-04181-w) assessed the ability of <i>Coxiella burnetii </i>proteins to interact with MHC alleles in human, mouse, and cattle species, the data from which is available on the Open Science Framework repository with accession number RN6QA (DOI: 10.17605/OSF.IO/RN6QA).Presently, bioinformatic programs NetBoLAIIpan 1.0 and NetMHCpan 4.1 were employed to predict T-cell epitopes within the <i>C. burnetii </i>proteome for the small ruminant species and to expand cattle predictions. The new datasets available herein provide the species, amino acid sequence, position within the protein, GenBank ID, allele name, and the predicted binding strength for each tested peptide.
DOI: 10.15482/usda.adc.24712827.v1
title: Data from: Expansion of Proteome-wide <i>Coxiella burnetii </i>Comparative T-cell Epitope Prediction to Include Small Ruminant Hosts

description: T-cell epitopes represent sampled environmental- and self-peptides loaded into major histocompatibility complex (MHC) proteins. Bioinformatic tools have been produced to predict these interactions for many species, providing peptides of interest in vaccine development studies.Prior work by the researchers (DOI: 10.1186/s12859-021-04181-w) assessed the ability of <i>Coxiella burnetii </i>proteins to interact with MHC alleles in human, mouse, and cattle species, the data from which is available on the Open Science Framework repository with accession number RN6QA (DOI: 10.17605/OSF.IO/RN6QA).Presently, bioinformatic programs NetBoLAIIpan 1.0 and NetMHCpan 4.1 were employed to predict T-cell epitopes within the <i>C. burnetii </i>proteome for the small ruminant species and to expand cattle predictions. The new datasets available herein provide the species, amino acid sequence, position within the protein, GenBank ID, allele name, and the predicted binding strength for each tested peptide.
DOI: 10.6084/m9.figshare.24747519
title: Research data of Gouveia et al - Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic

description: Research data of Gouveia et al: Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic
DOI: 10.6084/m9.figshare.24747519.v2
title: Research data of Gouveia et al - Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic

description: Research data of Gouveia et al: Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic
DOI: 10.6084/m9.figshare.24747519.v1
title: Research data of Gouveia et al - Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic

description: Research data of Gouveia et al: Cellular and enzymatic determinants impacting the exolytic action of an anti-staphylococcal enzybiotic
DOI: 10.6084/m9.figshare.24772854
title: Data associated with the manuscript "High above the rest: Standing behaviors in amoebae of <i>Sappinia </i>and <i>Thecamoeba</i>"

description: Data associated with "High above the rest: Standing behaviors in amoebae of<i> </i><i>Sappinia</i> and<i> </i><i>Thecamoeba". </i><br>All molecular data and supplemental files (figures and videos) associated with this manuscript.<br><b>Supplemental Figure 1. </b><i>Thecamoeba homersimpsonii</i> strain SK13-4H amoebae (A, B, C) and nucleus (D). Doughnut behavior (E & F). Scalebar A & D are 10 µm (A-C to scale) and F is 25 µm.<br><b>Supplemental Video 1.</b><b>[SupplementalVideo1.SappiniaPick.mp4] </b>An example of a single cell pick of <i>Sappinia</i> sp. using platinum wire.<br><b>Supplemental Video 2.</b><b>[SupplementalVideo2.20220522 BF22-2A 5spf 30fps standing behavior.mp4] </b>Timelapse video of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A. Each frame was taken 5 seconds apart and compiled at 30 frames per second. Taken under transmitted light.<br><b>Supplemental Video 3.</b><b>[SupplementalVideo3.Sappinia Timelapse.BF22-2b.20220306.mp4] </b>Timelapse video of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A. Each frame was taken 5 seconds apart and compiled at 30 frames per second. Taken under transmitted light.<br><b>Supplemental Video 4.</b><b>[SupplementalVideo4.BF22Dense CultureOverview_QT.mp4] </b>Realtime video microscopy of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A on dung. Taken under reflected light.<br><b>Supplemental Video 5.</b><b>[SupplementalVideo5.Thecamoeba.Doughnut10X.realtime.mp4] </b>Realtime video microscopy of the<b> </b>doughnut formation in <i>Thecamoeba homersimpsonii </i>SK13-4B. Taken under transmitted light.<br><b>Supplemental Video 6.</b><b>[SupplementalVideo6.Polyvacuole_timeseries.Sappinia_dangeardii.40X.mp4] </b>Time series micrographs of <i>Sappinia dangeardii</i> polyvacoule formation.
DOI: 10.6084/m9.figshare.24772854.v1
title: Data associated with the manuscript "High above the rest: Standing behaviors in amoebae of <i>Sappinia </i>and <i>Thecamoeba</i>"

description: Data associated with "High above the rest: Standing behaviors in amoebae of<i> </i><i>Sappinia</i> and<i> </i><i>Thecamoeba". </i><br>All molecular data and supplemental files (figures and videos) associated with this manuscript.<br><b>Supplemental Figure 1. </b><i>Thecamoeba homersimpsonii</i> strain SK13-4H amoebae (A, B, C) and nucleus (D). Doughnut behavior (E & F). Scalebar A & D are 10 µm (A-C to scale) and F is 25 µm.<br><b>Supplemental Video 1.</b><b>[SupplementalVideo1.SappiniaPick.mp4] </b>An example of a single cell pick of <i>Sappinia</i> sp. using platinum wire.<br><b>Supplemental Video 2.</b><b>[SupplementalVideo2.20220522 BF22-2A 5spf 30fps standing behavior.mp4] </b>Timelapse video of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A. Each frame was taken 5 seconds apart and compiled at 30 frames per second. Taken under transmitted light.<br><b>Supplemental Video 3.</b><b>[SupplementalVideo3.Sappinia Timelapse.BF22-2b.20220306.mp4] </b>Timelapse video of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A. Each frame was taken 5 seconds apart and compiled at 30 frames per second. Taken under transmitted light.<br><b>Supplemental Video 4.</b><b>[SupplementalVideo4.BF22Dense CultureOverview_QT.mp4] </b>Realtime video microscopy of standing <i>Sappinia</i> <i>dangeardii</i> BF22-2A on dung. Taken under reflected light.<br><b>Supplemental Video 5.</b><b>[SupplementalVideo5.Thecamoeba.Doughnut10X.realtime.mp4] </b>Realtime video microscopy of the<b> </b>doughnut formation in <i>Thecamoeba homersimpsonii </i>SK13-4B. Taken under transmitted light.<br><b>Supplemental Video 6.</b><b>[SupplementalVideo6.Polyvacuole_timeseries.Sappinia_dangeardii.40X.mp4] </b>Time series micrographs of <i>Sappinia dangeardii</i> polyvacoule formation.
DOI: 10.6084/m9.figshare.24774516
title: Export Bugs in COT and PaaS.zip

description: The dataset comprises three distinct comma-separated values (CSV) files, each corresponding to a specific platform: Kubernetes, Apache Mesos, and OpenShift. Each file encompasses information on both resolved and unresolved bugs identified within the respective platform. The data includes a concise description of each bug, a link to the corresponding issue report, reproducible steps (if available), category, severity level, and affected versions.
DOI: 10.6084/m9.figshare.24774516.v1
title: Export Bugs in COT and PaaS.zip

description: The dataset comprises three distinct comma-separated values (CSV) files, each corresponding to a specific platform: Kubernetes, Apache Mesos, and OpenShift. Each file encompasses information on both resolved and unresolved bugs identified within the respective platform. The data includes a concise description of each bug, a link to the corresponding issue report, reproducible steps (if available), category, severity level, and affected versions.
DOI: 10.3886/e195666
title: Gameplay Telemetry for a Block-based Programming Game

description: This project explored developing telemetry-based measures related to computational thinking (CT)
processes of young children use as they used a game-based programming game, codeSpark Academy. Associations between CT processes and an external measure of CT, TechCheck, was also explored. <br><br>The data file include: (a) codebook for the datasets; (b) raw telemetry; (c) ratings of each game level against CT processes; (d) game level solutions; (e) student background information; (f) pretest and posttest data; and (g) ratings of each game test items against CT processes<br><br><br>
description: Response Rates: During winter 2021 and fall 2021, students from first and third grade were recruited (two classrooms per grade) at a charter school. Students came from socioeconomically disadvantaged families. 56% were English learners and 96% were of Hispanic or Latino ethnicity. The pretest was given one week before the students started playing codeSpark Academy. The intervention took place over the course of six weeks in which players were given six weekly lessons that illustrated the different computational constructs in context of the game levels. Students were encouraged to continue playing codeSpark Academy outside of class. One week after the intervention, the posttest was given.<br>
description: First grade (n = 37) and third grade (n = 36) students from a public charter school.
DOI: 10.3886/e195666v1
title: Gameplay Telemetry for a Block-based Programming Game

description: This project explored developing telemetry-based measures related to computational thinking (CT)
processes of young children use as they used a game-based programming game, codeSpark Academy. Associations between CT processes and an external measure of CT, TechCheck, was also explored. <br><br>The data file include: (a) codebook for the datasets; (b) raw telemetry; (c) ratings of each game level against CT processes; (d) game level solutions; (e) student background information; (f) pretest and posttest data; and (g) ratings of each game test items against CT processes<br><br><br>
description: Response Rates: During winter 2021 and fall 2021, students from first and third grade were recruited (two classrooms per grade) at a charter school. Students came from socioeconomically disadvantaged families. 56% were English learners and 96% were of Hispanic or Latino ethnicity. The pretest was given one week before the students started playing codeSpark Academy. The intervention took place over the course of six weeks in which players were given six weekly lessons that illustrated the different computational constructs in context of the game levels. Students were encouraged to continue playing codeSpark Academy outside of class. One week after the intervention, the posttest was given.<br>
description: First grade (n = 37) and third grade (n = 36) students from a public charter school.
DOI: 10.6084/m9.figshare.24773568
title: Complex aneuploidy triggers autophagy and p53-mediated apoptosis and impairs the second lineage segregation in human preimplantation embryos

description: Regin et al. investigated the cellular consequences of aneuploidy in human pre-implantation embryos. Here you can find the source data for the figures, the supplementary tables and the count table on which the RNA seq analysis is based on.
DOI: 10.6084/m9.figshare.24773568.v2
title: Complex aneuploidy triggers autophagy and p53-mediated apoptosis and impairs the second lineage segregation in human preimplantation embryos

description: Regin et al. investigated the cellular consequences of aneuploidy in human pre-implantation embryos. Here you can find the source data for the figures, the supplementary tables and the count table on which the RNA seq analysis is based on.
DOI: 10.6084/m9.figshare.24773568.v1
title: Complex aneuploidy triggers autophagy and p53-mediated apoptosis and impairs the second lineage segregation in human preimplantation embryos

description: Regin et al. investigated the cellular consequences of aneuploidy in human pre-implantation embryos. Here you can find the source data for the figures, the supplementary tables and the count table on which the RNA seq analysis is based on.
DOI: 10.25345/c5x921v87
title: MassIVE MSV000093609 - Arajuno Stem Bark (A. rigidum, C. guianensis, M. laevis and P. sagotianum)
title: LC-MS/MS of 4 species of plant used in Amazonia medicine recipes.
DOI: 10.6084/m9.figshare.18450986
title: Validation.xlsx

description: VASA CHERG tool validation
DOI: 10.6084/m9.figshare.18450986.v1
title: Validation.xlsx

description: VASA CHERG tool validation
DOI: 10.6084/m9.figshare.24187626
title: VASA Complete dataset

description: Tool validation
DOI: 10.5281/zenodo.10151797
title: PacBio HiFi de-novo assembled genome and mitochondrial genome for Orbicella faveolata

description: Final assembly using Funannotate of Orbicella faveolata from PacBio HiFi reads. For full methods please see the publication.
DOI: 10.5281/zenodo.10151798
title: PacBio HiFi de-novo assembled genome and mitochondrial genome for Orbicella faveolata

description: Final assembly using Funannotate of Orbicella faveolata from PacBio HiFi reads. For full methods please see the publication.
DOI: 10.5517/ccdc.csd.cc2bj3dd
title: CCDC 2160433: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3ff
title: CCDC 2160434: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3ss
title: CCDC 2160445: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3vv
title: CCDC 2160447: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3ww
title: CCDC 2160448: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3xx
title: CCDC 2160449: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj67b
title: CCDC 2160521: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj69d
title: CCDC 2160523: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj3tt
title: CCDC 2160446: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj6bf
title: CCDC 2160524: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2bj4kl
title: CCDC 2160469: Experimental Crystal Structure Determination

description: Related Article: Thach N. Tu, Manfred Scheer|2023|Chem (Cell Press)|9|227|doi:10.1016/j.chempr.2022.10.016
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.