cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1251285
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science Malaria articles available via PubMed Central (PMC): 3rd URL
DOI: 10.6084/m9.figshare.1251303.v2
title: Spotting East African Mammals in Open Savannah from Space Part I

description: A GeoEye-1 satellite image on 11th August 2009 to capture the migration of the large-sized herd animals (i.e., wildebeest and zebra) in the Maasai Mara National Reserve, Kenya.
DOI: 10.6084/m9.figshare.1251229
title: Soil carbon and soil nitrogen data from Weimer run watershed, WV

description: Soil carbon (total carbon) and soil nitrogen (total nitrogen) both in % and in moles for soil samples taken at four different soil profile depths (depth of the organic layer, 0 - 5, 0 - 12, and 0 - 20 cm) in the Weimer run watershed located near Davis, WV, USA.
DOI: 10.6084/m9.figshare.1251303.v4
title: Spotting East African Mammals in Open Savannah from Space

description: A GeoEye-1 satellite image on 11th August 2009 to capture the migration of the large-sized herd animals (i.e., wildebeest and zebra) in the Maasai Mara National Reserve, Kenya.
DOI: 10.6084/m9.figshare.1251217
title: Thaxtomin defined medium

description: TDM is a defined basal medium used almost exclusively for cultivating Streptomyces scabies 87-22 (and other thaxtomin-producing streptomycetes) for analysis of thaxomin production and gene expression studies. Production of thaxtomin is achieved by addition of 0.7% cellobiose.
DOI: 10.6084/m9.figshare.1251228
title: Soils data from Weimer Run watershed, WV

description: Soil organic matter (%), soil bulk density (g cm^-3), soil porosity (m^3 m^-3) and particle density (g cm^-3) for three different soil depths (0 - 5, 0 - 12, and 0 -20 cm) taken between 2011 and 2013 in the Weimer Run watershed.
DOI: 10.6084/m9.figshare.1251303.v3
title: Spotting East African Mammals in Open Savannah from Space Part I

description: A GeoEye-1 satellite image on 11th August 2009 to capture the migration of the large-sized herd animals (i.e., wildebeest and zebra) in the Maasai Mara National Reserve, Kenya.
DOI: 10.6084/m9.figshare.1251285.v1
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English<br>- Open access - open science
DOI: 10.6084/m9.figshare.1251215
title: Gene deletion in actinomycetes using I-SceI meganuclease

description: This protocol explains how to make deletions in actinomycete species using an efficient method to generate gene or gene cluster deletions by homologous recombination. This method does not introduce any other changes to the targeted organism’s genome, making sequential deletions easy to carry out. This is a two-step protocol.
DOI: 10.6084/m9.figshare.1251203
title: Resting state BOLD functional connectivity at 3T: spin echo versus gradient echo EPInew fileset

description: Data
DOI: 10.6084/m9.figshare.1251229.v2
title: Soil carbon and soil nitrogen data from Weimer run watershed, WV

description: Soil carbon (total carbon) and soil nitrogen (total nitrogen) both in % and in moles for soil samples taken at four different soil profile depths (depth of the organic layer, 0 - 5, 0 - 12, and 0 - 20 cm) in the Weimer run watershed located near Davis, WV, USA.
DOI: 10.6084/m9.figshare.1251285.v2
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science
DOI: 10.6084/m9.figshare.1251203.v1
title: Resting state BOLD functional connectivity at 3T: spin echo versus gradient echo EPInew fileset

description: Data
DOI: 10.6084/m9.figshare.1251215.v2
title: Gene deletion in actinomycetes using I-SceI meganuclease

description: This protocol explains how to make deletions in actinomycete species using an efficient method to generate gene or gene cluster deletions by homologous recombination. This method does not introduce any other changes to the targeted organism’s genome, making sequential deletions easy to carry out. This is a two-step protocol.
DOI: 10.6084/m9.figshare.1251229.v1
title: soil carbon and nitrogen data from weimer run

description: Soil carbon (total carbon) and soil nitrogen (total nitrogen) both in % and in moles for soil samples taken at four different soil profile depths (depth of the organic layer, 0 - 5, 0 - 12, and 0 - 20 cm) in the Weimer run watershed located near Davis, WV, USA.
DOI: 10.6084/m9.figshare.1251201
title: Weimer run flux and micrometeorological data 2010-2012

description: These data were collected from 2010 - 2011. Columns of data include: ELEV - elevation treatments (HIGH, MID, LOW) VEG - vegetation cover treatment (OPEN, SHRUB, CANOPY) PLOT - replicate number JD - julian day with in year ADJ_JD - cumulative julian day beginning January 1, 2010. 366 would be January 1, 2011, etc. EGM - soil co2 efflux in grams of CO2 per m^-2 per hr^-1 FLUX - soil co2 efflux in micromoles of CO2 per m^-2 per sec^-1 TEMP - soil temperature at 12 cm in centigrade THETA - volumetric water content (%) unadjusted to soil type YEAR - collection year LOG_FLUX - the log of FLUX SQR_FLUX - the square root of FLUX
DOI: 10.6084/m9.figshare.1251215.v1
title: Gene deletion in actinomycetes using I-SceI meganuclease

description: This protocol explains how to make deletions in actinomycete species using an efficient method to generate gene or gene cluster deletions by homologous recombination. This method does not introduce any other changes to the targeted organism’s genome, making sequential deletions easy to carry out. This is a two-step protocol.
DOI: 10.6084/m9.figshare.1251285.v3
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science
DOI: 10.6084/m9.figshare.1251201.v2
title: Weimer run flux and micrometeorological data 2010-2012

description: These data were collected from 2010 - 2011. Columns of data include: ELEV - elevation treatments (HIGH, MID, LOW) VEG - vegetation cover treatment (OPEN, SHRUB, CANOPY) PLOT - replicate number JD - julian day with in year ADJ_JD - cumulative julian day beginning January 1, 2010. 366 would be January 1, 2011, etc. EGM - soil co2 efflux in grams of CO2 per m^-2 per hr^-1 FLUX - soil co2 efflux in micromoles of CO2 per m^-2 per sec^-1 TEMP - soil temperature at 12 cm in centigrade THETA - volumetric water content (%) unadjusted to soil type YEAR - collection year LOG_FLUX - the log of FLUX SQR_FLUX - the square root of FLUX
DOI: 10.6084/m9.figshare.1251201.v1
title: Weimer Run flux and micrometeorological data 2010-2012

description: These data were collected from 2010 - 2011. Columns of data include: ELEV - elevation treatments (HIGH, MID, LOW) VEG - vegetation cover treatment (OPEN, SHRUB, CANOPY) PLOT - replicate number JD - julian day with in year ADJ_JD - cumulative julian day beginning January 1, 2010. 366 would be January 1, 2011, etc. EGM - soil co2 efflux in grams of CO2 per m^-2 per hr^-1 FLUX - soil co2 efflux in micromoles of CO2 per m^-2 per sec^-1 TEMP - soil temperature at 12 cm in centigrade THETA - volumetric water content (%) unadjusted YEAR - collection year LOG_FLUX - the log of FLUX SQR_FLUX - the square root of FLUX
DOI: 10.6084/m9.figshare.1251285.v4
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science Malaria articles available via PubMed Central (PMC): 3rd URL
DOI: 10.6084/m9.figshare.1251194
title: RUIDO & SORDERA

description: Poster presentado en Colombia - Barranquilla, Curso del Master de LMU.
DOI: 10.6084/m9.figshare.1251285.v6
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science Malaria articles available via PubMed Central (PMC): 3rd URL
DOI: 10.6084/m9.figshare.1251285.v5
title: Colombia Médica ―Article Collections: Neglected Tropical Diseases ―Malaria

description: Collection of malaria articles published in Colombia Médica (upload of pdf archives in progress). - 1970 to present.<br>- Language: English / Spanish<br>- Open access - open science
DOI: 10.6084/m9.figshare.1251194.v1
title: RUIDO & SORDERA

description: Poster presentado en Colombia - Barranquilla, Curso del Master de LMU.
DOI: 10.6084/m9.figshare.1251183
title: Microarray Analysis With Bioconductor Workshop

description: A workshop on using bioconductor to find genes and pathways showing diferential expression between two groups of patients. Uses bioconductor packages for the sample data, analysis and display of results. The workshop was prepared for the UPR/MD Anderson Cancer Center Partnership for Excellence in Cancer Research, San Juan, PR November 14, 2014.
DOI: 10.6084/m9.figshare.1251186
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1251186.v1
title: Gaussian Job Archive for C50H68Cl2N6O2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1251039
title: How diffusivity, thermocline and incident light intensity modulate the dynamics of deep chlorophyll maximum in Tyrrhenian Sea

description: During the last few years theoretical works have shed new light and proposed new hypotheses on the mechanisms which regulate the spatiotemporal<br>behaviour of phytoplankton communities in marine pelagic ecosystems.<br>Despite this, relevant physical and biological issues, such as effects of the timedependent mixing in the upper layer, competition between species, and dynamics of non-stationary deep chlorophyll maxima, are still open questions. In this work, we<br>analyze the spatio-temporal behaviour of five phytoplankton species in a real marine<br>ecosystem by using a one-dimensional reaction-diffusion-taxis model. The study is performed, taking into account the seasonal variations of environmental variables, such as light intensity, thickness of upper mixed layer and profiles of vertical turbulent diffusivity, obtained starting from experimental findings. Theoretical distributions of phytoplankton cell concentration was converted in chlorophyll concentration, and compared with the experimental profiles measured in a site of the Tyrrhenian Sea at four different times (seasons) of the year, during four different oceanographic cruises. As a result we find a good agreement between theoretical and<br>experimental distributions of chlorophyll concentration. In particular, theoretical results<br>reveal that the seasonal changes of environmental variables play a key role in the phytoplankton distribution and determine the properties of the deep chlorophyll maximum. This study could be extended to other marine ecosystems to predict future changes in the phytoplankton biomass due to global warming, in view of devising strategies to prevent the decline of the primary production and the consequent decrease of fish species.
DOI: 10.6084/m9.figshare.1251039.v1
title: How diffusivity, thermocline and incident light intensity modulate the dynamics of deep chlorophyll maximum in Tyrrhenian Sea

description: During the last few years theoretical works have shed new light and proposed new hypotheses on the mechanisms which regulate the spatiotemporal<br>behaviour of phytoplankton communities in marine pelagic ecosystems.<br>Despite this, relevant physical and biological issues, such as effects of the timedependent mixing in the upper layer, competition between species, and dynamics of non-stationary deep chlorophyll maxima, are still open questions. In this work, we<br>analyze the spatio-temporal behaviour of five phytoplankton species in a real marine<br>ecosystem by using a one-dimensional reaction-diffusion-taxis model. The study is performed, taking into account the seasonal variations of environmental variables, such as light intensity, thickness of upper mixed layer and profiles of vertical turbulent diffusivity, obtained starting from experimental findings. Theoretical distributions of phytoplankton cell concentration was converted in chlorophyll concentration, and compared with the experimental profiles measured in a site of the Tyrrhenian Sea at four different times (seasons) of the year, during four different oceanographic cruises. As a result we find a good agreement between theoretical and<br>experimental distributions of chlorophyll concentration. In particular, theoretical results<br>reveal that the seasonal changes of environmental variables play a key role in the phytoplankton distribution and determine the properties of the deep chlorophyll maximum. This study could be extended to other marine ecosystems to predict future changes in the phytoplankton biomass due to global warming, in view of devising strategies to prevent the decline of the primary production and the consequent decrease of fish species.
DOI: 10.6084/m9.figshare.1251006
title: Preparation of high quality total RNA

description: This protocol explains how to prepare high quality total RNA from Streptomyces strains for downstream applications including RT-PCR, qRT-PCR, RNA-Sequencing (RNA-Seq) and differential RNA (dRNA) Seq. This protocol is routinely use to prepare total RNA from S. coelicolor, S. venezuelae and S. albus strains.
DOI: 10.6084/m9.figshare.1250963
title: Plate tectonic settings for Precambrian basic rocks from Brazil by multidimensional tectonomagmatic discrimination diagrams and their limitations

description: Multidimensional discrimination diagrams (2006–2011) for basic and ultrabasic igneous rocks were applied to Precambrian rock suites from the Amazonian and São Francisco cratons, and the Tocantins Province, Brazil, to infer their possible tectonic settings. The chosen study cases in the Amazonian craton include the ca. 3.0 Ga metabasalts of the Identidade greenstone belt, 1.87–1.80 Ga Parauapebas anorogenic basalt-rhyolite dikes, 1.86–1.82 Ga Rio Branco anorogenic gabbro-basalt association, ca. 1.76–1.74 Ga Aripuanã and Teles Pires intracratonic basalt-felsic volcanic associations, and 1.76–1.74 Ga Jamari and 1.60–1.53 Ga Serra da Providência arc-related gabbroic rocks. In the São Francisco craton, we selected 1.48 Ga arc-related amphibolites of the Rio Capim greenstone belt, continental mafic dikes of Uauá (2.6 Ga), Curaçá and Chapada Diamantina (1.5 Ga), and Espinhaço (ca. 1.0 Ga). In the Tocantins Province, ca. 3.0 Ga komatiites associated with oceanic basalts of the Crixás and Guarinos greenstone belts were studied. The application of the diagrams generally provided consistent results with the authors’ proposed tectonic settings based on field relationships and geochemical data. The exceptions are some within-plate (continental) mafic dikes and basalts for which our diagrams do not work well. For comparison, we also used two ternary and two bivariate traditional discrimination diagrams for the data from the Amazonian craton, whose results were poorer than the newer multidimensional diagrams.
DOI: 10.6084/m9.figshare.1251006.v1
title: Preparation of high quality total RNA

description: This protocol explains how to prepare high quality total RNA from Streptomyces strains for downstream applications including RT-PCR, qRT-PCR, RNA-Sequencing (RNA-Seq) and differential RNA (dRNA) Seq. This protocol is routinely use to prepare total RNA from S. coelicolor, S. venezuelae and S. albus strains.
DOI: 10.6084/m9.figshare.1250961
title: A new German Charité Jet Lag Scale for jet lag symptoms and application

description: Travelling across multiple time zones provokes adaptation of endogenous circadian rhythm to the new time zone. Within the context of previous studies, an English-language state-of-health questionnaire, the Columbia Jet Lag Scale, is the only sufficiently validated scale for jet lag and its symptoms. This study presents a new state-of-health questionnaire in German, one intended to achieve standardisation of surveys on jet lag. The questionnaire was applied to define the baseline for the prevalence of jet lag symptoms based on a reference group (<i>n</i> = 36). The jet lag score ascertained was subsequently applied to determine the frequency of jet lag in a group of 53 subjects. Systematic investigation of the frequency of jet lag symptoms had not been previously presented. Among the group of 53 travelling test subjects, 60% demonstrated moderate jet lag symptoms.Practitioner Summary: This introduction of the Charité Jet Lag Scale, the first German jet lag questionnaire, calls attention to this topic for the first time since a 2000 publication in <i>Ergonomics</i>. Our systematic investigation of jet lag frequency, with the new scale, determined moderate jet lag symptoms among 60% of subjects.
DOI: 10.6084/m9.figshare.1250962
title: Synthesis and Characterization of Two New Mn(II) Coordination Polymers Containing Different Metal-Carboxylate Chain Motifs

description: Two Mn(II) coordination polymers, formulated as [Mn(Hhtpa)<sub>2</sub>(bpa)<sub>2</sub>(H<sub>2</sub>O)]<i><sub>n</sub></i> (1) and {[Mn(htpa)(H<sub>2</sub>O)]·H<sub>2</sub>O}<i><sub>n</sub></i> (2) (htpa = 4-carboxyphenylacetate, bpa = 1,2-di(4-pyridyl)-ethane), have been synthesized by the hydrothermal reaction and characterized by single-crystal X-ray diffraction, elemental analysis, IR, and thermo-gravimetric analyses (TGA). The structures of both compounds are based on different Mn(II)-carboxylate chain motifs. Complex 1 is a one-dimensional coordination polymer featuring <i>μ</i><sub>2</sub>-carboxyl bridged MnO<sub>4</sub>N<sub>2</sub> octahedra. Complex 2 contains Mn-O inorganic chains, featuring <i>μ</i><sub>2</sub>-O bridged MnO<sub>6</sub> octahedra, which are interconnected further by interchain htpa ligands to form a two-dimensional coordination polymer.
DOI: 10.6084/m9.figshare.1250963.v1
title: Plate tectonic settings for Precambrian basic rocks from Brazil by multidimensional tectonomagmatic discrimination diagrams and their limitations

description: Multidimensional discrimination diagrams (2006–2011) for basic and ultrabasic igneous rocks were applied to Precambrian rock suites from the Amazonian and São Francisco cratons, and the Tocantins Province, Brazil, to infer their possible tectonic settings. The chosen study cases in the Amazonian craton include the ca. 3.0 Ga metabasalts of the Identidade greenstone belt, 1.87–1.80 Ga Parauapebas anorogenic basalt-rhyolite dikes, 1.86–1.82 Ga Rio Branco anorogenic gabbro-basalt association, ca. 1.76–1.74 Ga Aripuanã and Teles Pires intracratonic basalt-felsic volcanic associations, and 1.76–1.74 Ga Jamari and 1.60–1.53 Ga Serra da Providência arc-related gabbroic rocks. In the São Francisco craton, we selected 1.48 Ga arc-related amphibolites of the Rio Capim greenstone belt, continental mafic dikes of Uauá (2.6 Ga), Curaçá and Chapada Diamantina (1.5 Ga), and Espinhaço (ca. 1.0 Ga). In the Tocantins Province, ca. 3.0 Ga komatiites associated with oceanic basalts of the Crixás and Guarinos greenstone belts were studied. The application of the diagrams generally provided consistent results with the authors’ proposed tectonic settings based on field relationships and geochemical data. The exceptions are some within-plate (continental) mafic dikes and basalts for which our diagrams do not work well. For comparison, we also used two ternary and two bivariate traditional discrimination diagrams for the data from the Amazonian craton, whose results were poorer than the newer multidimensional diagrams.
DOI: 10.6084/m9.figshare.1250959
title: Effects of acidic conditions on the physiology of a green alga (<i>Micractinium</i> sp.) before and after a 5-year interaction with <i>Tetrahymena thermophila</i> in an experimental microcosm

description: The mechanisms through which algae evolve physiological characteristics related to endosymbiotic associations with heterotrophic organisms remain unclear. We previously showed that a green alga (<i>Micractinium</i> sp.) was able to evolve a host (ciliate)-benefiting phenotype that prolonged the longevity of <i>Tetrahymena thermophila</i> in the absence of bacteria during a 5-year culture period in an experimental microcosm. Comparative experiments between the ancestral alga (i.e. original) and evolved algal clones of the same lineage can be performed to analyse the mechanisms that underlie algal evolution during interactions with ciliates. Here, we investigated the effects of acidic conditions on algal physiology because the acidic conditions within the food vacuoles of <i>Tetrahymena</i> could potentially affect algal evolution during long-term interactions. It might be expected that algal clones isolated from <i>T. thermophila</i> hosts would have developed the ability to resist acidic conditions in order to establish within the host, when compared with the ancestral strain. Unexpectedly, comparative analyses demonstrated that acidic conditions with pH values ranging from 3.9 to 4.3 limited the growth of the isolated algal clones SC9-1 and SC10-2, whereas the ancestral strain could grow under these conditions. Acidic conditions were responsible for significantly lower chlorophyll <i>a</i>/chlorophyll <i>b</i> ratios in the isolated algal clones, and the isolated clone SC9-1 exhibited a high cellular content of chlorophyllide <i>a</i> during a short exposure to acidic conditions, suggesting that degradation of chlorophyll <i>a</i> occurred. Furthermore, acidic conditions increased the release of extracellular glycerol and sucrose in the SC9-1 clone. These results indicated that the ancestral strain showed phenotypic changes related to acidic conditions, which may reflect the ongoing development of an algal phenotype suited to symbiosis. Hypotheses are proposed to explain the limited growth of the isolated clones, and implications for the <i>Micractinium</i>–<i>Tetrahymena</i> association are discussed.
DOI: 10.6084/m9.figshare.1250961.v2
title: A new German Charité Jet Lag Scale for jet lag symptoms and application

description: Travelling across multiple time zones provokes adaptation of endogenous circadian rhythm to the new time zone. Within the context of previous studies, an English-language state-of-health questionnaire, the Columbia Jet Lag Scale, is the only sufficiently validated scale for jet lag and its symptoms. This study presents a new state-of-health questionnaire in German, one intended to achieve standardisation of surveys on jet lag. The questionnaire was applied to define the baseline for the prevalence of jet lag symptoms based on a reference group (<i>n</i> = 36). The jet lag score ascertained was subsequently applied to determine the frequency of jet lag in a group of 53 subjects. Systematic investigation of the frequency of jet lag symptoms had not been previously presented. Among the group of 53 travelling test subjects, 60% demonstrated moderate jet lag symptoms.Practitioner Summary: This introduction of the Charité Jet Lag Scale, the first German jet lag questionnaire, calls attention to this topic for the first time since a 2000 publication in <i>Ergonomics</i>. Our systematic investigation of jet lag frequency, with the new scale, determined moderate jet lag symptoms among 60% of subjects.