cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1279474.10fu
title: SH1279474.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1279475.10fu
title: SH1279475.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.8ccg7f
title: Occurrence Download

description: A dataset containing 14535553 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fagus crenata, Quercus montana, Vaccinium myrtillus, Picea abies, Quercus alba, Fagus sylvatica, Picea engelmannii, Pinus pinea, Acer saccharum, Fagus grandifolia, Abies alba, Quercus mongolica, Quercus robur, Empetrum nigrum, Quercus velutina, Pseudotsuga menziesii, Pinus sylvestris, Pinus albicaulis, Betula papyrifera, Quercus rubra, Araucaria araucana, Abies balsamea, Betula pendula, Abies lasiocarpa, Carpinus betulus, Tilia cordata, Quercus ilex, Betula pubescens, Calocedrus decurrens, Pinus ponderosa, Quercus kelloggii, Pinus mugo, Pinus edulis, Fraxinus excelsior, Vaccinium vitis-idaea, Larix decidua, Picea glauca, Quercus petraea, Acer pseudoplatanus, Picea mariana, Nothofagus solandri, Pinus contorta, Pinus banksiana, Pinus monticola, Abies amabilis, Tsuga mertensiana, Abies procera, Quercus lobata, Alnus incana, Betula neoalaskana, Chionochloa pallens, Quercus agrifolia, Quercus chrysolepis, Quercus douglasii, Quercus wislizeni, Pinus palustris, Pinus cembra, Pinus pinaster, Nothofagus pumilio, Quercus cerris, Phyllocladus hypophyllus, Schima brevifolia)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 14535553 records from 6035 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004037-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/kwp5wn
title: Bureauonderzoek en Verkennend Booronderzoek Archeologie Plangebied Keppelseweg te Wehl, gemeente Doetinchem
title: Plangebied Keppelseweg te Wehl, gemeente Doetinchem

description: Hamaland Advies heeft in opdracht van Buro Ontwerp & Omgeving een archeologisch onderzoek uitgevoerd voor de ontwikkeling van een terrein aan de Keppelseweg te Wehl. Het plangebied heeft een omvang van ca. 14.800 m2 (ca. 1,5 ha). In het plangebied worden drie nieuwe gebouwen voor in totaal 46 appartementen gerealiseerd. Daarnaast wordt de bestaande villa in het zuidoosten van het plangebied uitgebreid met een nieuwe vleugel voor 4 appartementen. De exacte bodemverstoring ten behoeve van de aanleg van funderingen is nog niet bekend, maar zal naar verwachting circa 80 cm-mv bedragen (vorstvrije funderingsdiepte). De omvang en verstoringsdiepte van de graafwerkzaamheden voor het leggen van kabels en leidingen zijn onbekend.
DOI: 10.15468/dl.dce7f4
title: Occurrence Download

description: A dataset containing 265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Briza minor",
 "Country is Chile",
 "HasCoordinate is true"
 ]
}

 The dataset includes 265 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011048-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17026/ar/uzb2co
title: Bureauonderzoek en Verkennend Booronderzoek Archeologie Plangebied Kommendijk 10 te Doetinchem, gemeente Doetinchem
title: Plangebied Kommendijk 10 te Doetinchem, gemeente Doetinchem

description: Hamaland Advies heeft in opdracht van Buha een bureauonderzoek en een verkennend booronderzoek uitgevoerd voor het plangebied aan de Kommendijk 10 te Doetinchem, ten behoeve van de uitbreiding van natuurbegraafplaats De Slangenburg. Het plangebied ligt ten oosten van de bebouwde kom van Doetinchem en heeft een oppervlakte van circa 4,4 hectare. De diepte van de toekomstige bodemingrepen is niet bekend.
DOI: 10.17026/ar/vb8hj9
title: Bureauonderzoek en Verkennend Booronderzoek Archeologie Plangebied Lodewijkstraat te Doetinchem, gemeente Doetinchem
title: Plangebied Lodewijkstraat te Doetinchem, gemeente Doetinchem

description: Hamaland Advies heeft in opdracht van PlanBuro Oosterink een bureauonderzoek en verkennend booronderzoek uitgevoerd voor het plangebied aan de Lodewijkstraat te Doetinchem, ten behoeve van de bouw van een dubbel woonhuis (Bijlage 1). Hoe diep het gebouw gefundeerd gaat worden is nog niet bekend. Wel kan rekening gehouden worden met een vorstvrije fundering, welke doorgaans tot 80 cm-mv worden aangelegd. Het plangebied ligt binnen de bebouwde kom en heeft een oppervlakte van circa 737 m2 (Afbeelding 1).
DOI: 10.15468/dl.hahs58
title: Occurrence Download

description: A dataset containing 1723 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardamine bonariensis"
 ]
}

 The dataset includes 1723 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011047-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dk3ms3
title: Occurrence Download

description: A dataset containing 1037 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Dicrodon Duméril & Bibron, 1839"
 ]
}

 The dataset includes 1037 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015590-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15497487
title: Dataset for Adjunct retino-protective activity of Ayurvedic polyherbal compound compared to conventional standard of care in Pramehaja Timira (non-proliferative diabetic retinopathy) – an open label, double arm, exploratory, randomized controlled trial

description: This dataset supports a randomized controlled trial investigating an integrative approach to managing non-proliferative diabetic retinopathy (NPDR). Diabetes mellitus, a global health burden, often leads to diabetic retinopathy, an ocular complication and a major cause of vision loss in working-age adults. Current standard treatments manage symptoms but do not offer a cure.

This study evaluates the efficacy of a comprehensive Ayurvedic treatment protocol, alongside conventional care, in preventing or halting NPDR progression. The dataset includes clinical observations from an open-label, two-arm, parallel-group RCT involving a total study duration of 80 days (40 days treatment + 40 days follow-up). Primary outcomes include changes in fundus photography and OCT macular cube metrics, with secondary outcomes assessed via ETDRS LogMAR visual acuity.

The dataset will enable future analyses on the potential of Ayurvedic interventions such as Rasayana therapy, Nasya, and Panchakarma procedures of Ayurveda for retinal protection and improved visual function. Results are intended to inform integrative ophthalmic care models and support the development of standardized protocols for DR management.
DOI: 10.5281/zenodo.15497488
title: Dataset for Adjunct retino-protective activity of Ayurvedic polyherbal compound compared to conventional standard of care in Pramehaja Timira (non-proliferative diabetic retinopathy) – an open label, double arm, exploratory, randomized controlled trial

description: This dataset supports a randomized controlled trial investigating an integrative approach to managing non-proliferative diabetic retinopathy (NPDR). Diabetes mellitus, a global health burden, often leads to diabetic retinopathy, an ocular complication and a major cause of vision loss in working-age adults. Current standard treatments manage symptoms but do not offer a cure.

This study evaluates the efficacy of a comprehensive Ayurvedic treatment protocol, alongside conventional care, in preventing or halting NPDR progression. The dataset includes clinical observations from an open-label, two-arm, parallel-group RCT involving a total study duration of 80 days (40 days treatment + 40 days follow-up). Primary outcomes include changes in fundus photography and OCT macular cube metrics, with secondary outcomes assessed via ETDRS LogMAR visual acuity.

The dataset will enable future analyses on the potential of Ayurvedic interventions such as Rasayana therapy, Nasya, and Panchakarma procedures of Ayurveda for retinal protection and improved visual function. Results are intended to inform integrative ophthalmic care models and support the development of standardized protocols for DR management.
DOI: 10.15468/dl.qmtjrx
title: Occurrence Download

description: A dataset containing 78098 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Natada nasoni (Grote, 1876), Cameraria castaneaeella (Chambers, 1875), Stigmella macrocarpae (Freeman, 1967) van Nieukerken et al., 2016, Phyllonorycter restrictella (Braun, 1939), Dasychira cinnamomea Grote & Robinson, 1866, Eratoneura harpola (Ross, 1956), Eratoneura adunca (Beamer, 1932), Glossonotus univittatus Harris, Telamona reclivata Fitch, Atymna castaneae Fitch, Ossiannilssonola quadrata (DeLong & Johnson, 1936), Telamona decorata Ball, Cameraria bethunella (Chambers, 1871), Paranthrene simulans (Grote, 1881), Andrena rehni Viereck, 1907, Coleophora leucochrysella Clemens, 1863, Anisota stigma Fabricius, 1775, Alebra aurea (Walsh, 1862), Euchlaena obtusaria (Hübner, 1813), Packardia elegans (Packard, 1864), Scolecocampa liburna Geyer, 1837, Dasychira meridionalis Barnes & McDunnough, 1913, Dyseriocrania griseocapitella Walsingham, 1898, Strangalepta abbreviata (Germar, 1824), Platycotis vittatus Fabricius, Korthalsella japonica (Thunb.) Engl., Taxillus sutchuenensis var. duclouxii (Lecomte) H.S.Kiu, Bretziella fagacearum (Bretz) Z.W.de Beer, Marinc., T.A.Duong & M.J.Wingf., Dryocosmus kuriphilus Yasumatsu, 1951, Curculio davidi L.Fairmaire, 1878, Oligonychus bicolor (Banks, 1894), Taeniodera flavofasciata formosana (Moser, 1910), Dicronocephalus bourgoini Pouillaude, 1914, Euselates tonkinensis formosana Moser, 1910, Cyrestis thyodamas formosana Fruhstorfer, 1898, Coilodera formosana (Moser, 1910), Matsumursine horishanella (Matsumura, 1927), Protaetia elegans (Kometani, 1938), Epitrichius cupreipes (Bourgoin, 1915), Athyma selenophora Kollar, 1848, Syntomoides imaon (Cramer, 1780), Scolia clypeata Sickman, 1894, Grammia phyllira Drury, 1773, Ancylis burgessiana (Zeller, 1875), Eratoneura crinita (Beamer, 1932), Alebra castaneae Hamilton, 1995, Curculio elephas J.C.Fabricius, 1781, Cossus cossus Linnaeus, 1758, Teredus cylindricus (Olivier, 1790), Phloeopora corticalis (Gravenhorst, 1802))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 78098 records from 756 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015586-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10391097
title: Datasets associated with the manuscript "Differential detection workflows for multi-sample single-cell RNA-seq data"

description: In this Zenodo repository, we share the data that is required to reproduce all the analyses from our publication "Differential detection workflows for multi-sample single-cell RNA-seq data".

This repository includes all* input data, intermediate results and final outputs that are represented in our manuscript. For a more elaborate description of the data, we refer to the companion GitHub. https://github.com/statOmics/DD_benchmarks for the benchmarks and https://github.com/statOmics/DD_cases for the case studies, respectively.
DOI: 10.5281/zenodo.10391096
title: Datasets associated with the manuscript "Differential detection workflows for multi-sample single-cell RNA-seq data"

description: In this Zenodo repository, we share the data that is required to reproduce all the analyses from our publication "Differential detection workflows for multi-sample single-cell RNA-seq data".

This repository includes all* input data, intermediate results and final outputs that are represented in our manuscript. For a more elaborate description of the data, we refer to the companion GitHub. https://github.com/statOmics/DD_benchmarks for the benchmarks and https://github.com/statOmics/DD_cases for the case studies, respectively.
DOI: 10.5281/zenodo.15497070
title: Datasets associated with the manuscript "Differential detection workflows for multi-sample single-cell RNA-seq data"

description: In this Zenodo repository, we share the data that is required to reproduce all the analyses from our publication "Differential detection workflows for multi-sample single-cell RNA-seq data".

This repository includes all* input data, intermediate results and final outputs that are represented in our manuscript. For a more elaborate description of the data, we refer to the companion GitHub. https://github.com/statOmics/DD_benchmarks for the benchmarks and https://github.com/statOmics/DD_cases for the case studies, respectively.
DOI: 10.20394/3tn5-mc53
title: Local authority and travel to work area Adzuna panel dataset series
DOI: 10.6084/m9.figshare.29136914
title: Supplement 2

description: Enterovirus D68 (EV-D68) causes a diverse range of infectious diseases, especially in children. Until 2010, EV-D68 was primarily associated with mild respiratory diseases. However, since 2010, it has been identified as a cause of severe respiratory illness, requiring hospitalization and intensive care unit admission. The increasing number of acute flaccid paralysis cases linked to EV-D68 infection has become a global public health concern since 2014. No effective vaccines or drugs are currently available for treatment. Through drug screening, we discovered that Geranyl-<i>p-trans-</i>coumaric acid(GCA), a pure compound extracted from Taiwanese propolis, could be a potential inhibitor against EV-D68. The underlying molecular mechanism was determined through a series of <i>in vitro</i> assays. We further confirmed this through drug-resistant virus generation and drug-protein interaction using molecular docking. As a result, GCA directly bound to viral capsid in VP1 at the canyon and heparan sulfate proteoglycan binding sites. This binding did not interfere with viral attachment to the cell surface but specifically inhibited viral uncoating. A single mutation at VP1 T92N was found to affect the binding site, however, it did not confer resistance to GCA. Additionally, we propose that unidentified cellular host factors may be involved in EV-D68 entry, potentially associated with the nonstructural viral protein 2C. Notably, only double mutations (VP1 T92N and 2C K6R) conferred resistance to GCA, suggesting a partial but cooperative role in the antiviral mechanism. The antiviral efficacy of GCA was further confirmed in an animal model. Collectively, our study not only identifies a promising inhibitor but also provides novel mechanistic insights into the viral entry process in EV-D68 life cycle.
DOI: 10.6084/m9.figshare.29136914.v1
title: Supplement 2

description: Enterovirus D68 (EV-D68) causes a diverse range of infectious diseases, especially in children. Until 2010, EV-D68 was primarily associated with mild respiratory diseases. However, since 2010, it has been identified as a cause of severe respiratory illness, requiring hospitalization and intensive care unit admission. The increasing number of acute flaccid paralysis cases linked to EV-D68 infection has become a global public health concern since 2014. No effective vaccines or drugs are currently available for treatment. Through drug screening, we discovered that Geranyl-<i>p-trans-</i>coumaric acid(GCA), a pure compound extracted from Taiwanese propolis, could be a potential inhibitor against EV-D68. The underlying molecular mechanism was determined through a series of <i>in vitro</i> assays. We further confirmed this through drug-resistant virus generation and drug-protein interaction using molecular docking. As a result, GCA directly bound to viral capsid in VP1 at the canyon and heparan sulfate proteoglycan binding sites. This binding did not interfere with viral attachment to the cell surface but specifically inhibited viral uncoating. A single mutation at VP1 T92N was found to affect the binding site, however, it did not confer resistance to GCA. Additionally, we propose that unidentified cellular host factors may be involved in EV-D68 entry, potentially associated with the nonstructural viral protein 2C. Notably, only double mutations (VP1 T92N and 2C K6R) conferred resistance to GCA, suggesting a partial but cooperative role in the antiviral mechanism. The antiviral efficacy of GCA was further confirmed in an animal model. Collectively, our study not only identifies a promising inhibitor but also provides novel mechanistic insights into the viral entry process in EV-D68 life cycle.
DOI: 10.6084/m9.figshare.29136914.v2
title: Supplement 2

description: Enterovirus D68 (EV-D68) causes a diverse range of infectious diseases, especially in children. Until 2010, EV-D68 was primarily associated with mild respiratory diseases. However, since 2010, it has been identified as a cause of severe respiratory illness, requiring hospitalization and intensive care unit admission. The increasing number of acute flaccid paralysis cases linked to EV-D68 infection has become a global public health concern since 2014. No effective vaccines or drugs are currently available for treatment. Through drug screening, we discovered that Geranyl-<i>p-trans-</i>coumaric acid(GCA), a pure compound extracted from Taiwanese propolis, could be a potential inhibitor against EV-D68. The underlying molecular mechanism was determined through a series of <i>in vitro</i> assays. We further confirmed this through drug-resistant virus generation and drug-protein interaction using molecular docking. As a result, GCA directly bound to viral capsid in VP1 at the canyon and heparan sulfate proteoglycan binding sites. This binding did not interfere with viral attachment to the cell surface but specifically inhibited viral uncoating. A single mutation at VP1 T92N was found to affect the binding site, however, it did not confer resistance to GCA. Additionally, we propose that unidentified cellular host factors may be involved in EV-D68 entry, potentially associated with the nonstructural viral protein 2C. Notably, only double mutations (VP1 T92N and 2C K6R) conferred resistance to GCA, suggesting a partial but cooperative role in the antiviral mechanism. The antiviral efficacy of GCA was further confirmed in an animal model. Collectively, our study not only identifies a promising inhibitor but also provides novel mechanistic insights into the viral entry process in EV-D68 life cycle.
DOI: 10.15468/dl.ktmny2
title: Occurrence Download

description: A dataset containing 4402 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Geometry POLYGON((-132.49791 9.33979,-55.04969 9.33979,-55.04969 60.17885,-132.49791 60.17885,-132.49791 9.33979))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Danaus plexippus (Linnaeus, 1758)",
 "Year 2025-2025"
 ]
}

 The dataset includes 4402 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015593-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7qpma4
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (BOL.6.4.3_2, BOL.6.1.1_2, BOL.6.2.2_2, BOL.6.2.3_2)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ascomycota"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015592-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29136983
title: Rainrates derived from X-band phase array radar and Bi-Directional Optical Flow method[Dataset]

description: The uploaded data are rain rates derived from X-band phase array radar and Bi-Directional Optical Flow method used for plotting in the article, along with the evaluation dataset.
DOI: 10.15468/dl.qwb6ht
title: Occurrence Download

description: A dataset containing 238 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Stylosanthes macrocephala M.B.Ferreira & Sousa Costa",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 238 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015598-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.