cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11374647.v1
title: Supplementary Tables for tourmaline Li and B isotopes.zip

description: The zip. file includs four .xlsx files, which are supplementary to our Manuscript of tourmaline Li and B isotopes. We are glad our data attract interest of researchers. Everyone should get our grant before using these data.
DOI: 10.6084/m9.figshare.25655361.v2
title: ATAC-seq peak files

description: The files are the reference ATAC-seq peaks used to measure counts in the 8 CVPC samples, the summits used to annotate ATAC-seq peaks with chromatin states from the EpiMap Repository, and the matrix of counts in the reference peaks.
DOI: 10.6084/m9.figshare.10538486.v2
title: Metadata record for: GOODD, a global dataset of more than 38,000 georeferenced dams

description: This dataset contains key characteristics about the data described in the Data Descriptor GOODD, a global dataset of more than 38,000 georeferenced dams. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format <br> <br> Versioning Note:Version 2 was generated when the metadata format was updated from JSON to JSON-LD. This was an automatic process that changed only the format, not the contents, of the metadata.<br>
DOI: 10.6084/m9.figshare.28521011.v1
title: Data for the study entitled "A new dosimetric method for evaluating the ESR intensity metrics applied to the early Quaternary sediments dating"

description: Origin source files containing the dose response curves and their corresponding fitting results. The three samples labeled as DWS, JZT, and XJW have equivalent dose (<i>D</i><sub>E</sub>) evaluation data corresponding to the three uploaded .opju files, respectively.Furthermore, dose rate evaluation data for these three samples have been uploaded in the form of the LDAC (v1.2) calculator, corresponding to three .xlsm files. Detailed specifications of the calculator can be found in: Liang, P., & Forman, S. L. (2019). LDAC: An Excel-based program for luminescence equivalent dose and burial age calculations. <i>Ancient TL</i>, <i>37</i>(2), 21–40. doi: 10.26034/la.atl.2019.536.
DOI: 10.6084/m9.figshare.5692006.v1
title: Posture alteration as a measure to accommodate uneven ground in able-bodied gait

description: Data-set collected from 12 participants contains: The ensemble average of following parameters of interest, in addition to their angular trajectories throughout stance phase of each individual step, were determined in the sagittal plane: 1) hip, knee and ankle joint angles at the instants of TD and TO (ankle: dorsiflexion and plantarflexion); 2) effective leg length, defined as the length between the hip and CoP; 3) vertical position of the CoM relative to the ground determined by the body segmental analysis method relative to the laboratory coordinate system throughout the stance phase; 4) leg angle, angle between effective leg and ground was calculated with respect to the negative x-axis. The effective leg length and CoM were both normalized to the distance between the greater trochanter marker and the lateral malleoli marker at the instant of TD. Backward rotation during step-down was calculated as the difference of the maximum of the trunk angle in the pre-perturbation step and the minimal trunk angle in perturbation step (step-down). Each column lists the mean value of variable of interest pertaining 12 participants. The dataset is arranged for the performance of a two-way repeated measures ANOVA to examine the effects of the posture (regular erect, 30° and 50° of trunk flexion from the vertical) and step (level step, pre-perturbation step, step-down, step-up).Zero values within the Exel file represent NaN. For understanding the names (i.e., abbrev./codes) given to the variable, please refer to 'read me' file. <br>
DOI: 10.6084/m9.figshare.24448723.v5
title: Non-canonical ORFs are an important source of tumor-specific antigens in a liver cancer meta-cohort

description: The file contains the supplementary tables of the manuscript "Non-canonical ORFs are an important source of tumor-specific antigens in a liver cancer meta-cohort" by Camarena ME. et al. It is in Microsoft Excel format and contains all data generated throughout the analysis, as well as a list of the publicly available datasets used in the publication.The first sheet contains a README with detailed information of what is shown in each of the other 26 sheets. It occupies ~ 75Mb.
DOI: 10.6084/m9.figshare.25265758.v1
title: E-waste Challenges of Generative Artificial Intelligence

description: These two files provide the detailed data for figure 1 and 2
DOI: 10.6084/m9.figshare.20559813.v1
title: Questionnaires and data instrument ISFM Malawi

description: These are the baseline, midline and endline questionnaires of the social science component of the project ISFM Malawi. The data are available in seperate folders. Project reports provide background information on the project.
DOI: 10.6084/m9.figshare.28119662.v2
title: IEEE123BusDataSD

description: This is the data for IEEE 123-Bus test System.
DOI: 10.6084/m9.figshare.28718690.v1
title: <b>Predation on the Prairie Kingsnake (</b><b><i>Lampropeltis calligaster</i></b><b>) by the Virginia Opossum (</b><b><i>Didelphis virginiana</i></b><b>) in Oklahoma, USA, with notes on opossum-snake interactions</b>

description: At 2129 h on 21 March 2025, after conducting frog call surveys near a pond in Fort Gibson Wildlife Management Area, Wagoner County, Oklahoma, USA, the first author heard rustling noises within a patch of tall, dried grass. Upon investigation, he observed and recorded video footage (doi pending) of an adult <i>D. virginiana </i>tugging on the posterior body of a live large adult Prairie Kingsnake (<i>Lampropeltis calligaster</i>) with its mouth. For ca. 20 min, the <i>D. virginiana </i>chewed and tugged on the posterior end of the snake, frequently repositioning its grip along various parts of the snake’s body as the snake attempted to escape (Fig. 1). The first author left the area, leaving the animals uninterrupted, and upon returning to the location ca. 70 min later, neither the <i>D. virginiana </i>nor <i>L. calligaster </i>could be relocated.
DOI: 10.6084/m9.figshare.21371247.v2
title: Dataset for Bimbard et al., 2022

description: Dataset from large-scale recordings using Neuropixels probes in mouse visual cortex during a passive audiovisual protocol. <br> Companion code at https://github.com/cbimbo/Bimbard2022. <br> The main dataset (ONEformat.tar.gz) contains the spiking data (after spike sorting), the behavioural data (after running <em>facemap)</em> and the experiment metadata (stimuli ID and times). The data is organized by experiment name (mouse and date). Each experiment folder contains the data in ONE format, and a pre-processed file that can also be obtained using the <em>processData_paper </em>function. Detailed information about the data format is in the README. <br> In addition, the anatomy of the cut for each transectomized animal is provided as a .obj (obtained using brainreg-segment) in a separate tar.gz file (TransectomyAnat.tar.gz). <br> Finally, all stimuli used in the study are available (Stimuli.tar.gz).
DOI: 10.6084/m9.figshare.14431148.v3
title: Fig. 3a

description: Raji B-cell lymphoma cells expressing the MICA*001 allele were injected iv into NOD-SCID immunodeficient mice simultaneously treated once with a range of doses of MICAB1 (0.05, 0.5, 2.5 or 5 mg/Kg, <i>n</i>=8 to 18, pool of 2 independent experiments) or isotype control mAb (2.5 or 5 mg/kg; <i>n</i>=17). Kaplan–Meier curves of mouse survival are shown. Log-rank Mantel–Cox test: **<i>p</i>=0.0024 100 µg (<i>n</i>=8), **<i>p</i>=0.0081 50 µg (<i>n</i>=10), *<i>p</i>=0.0303 10 µg (<i>n</i>=18).
DOI: 10.6084/m9.figshare.7306625.v1
title: Supplementary Material for: A Molecular Epidemiological Investigation of Carriage of the Adeno-Associated Virus in Murine Rodents and House Shrews in China

description: <b><i>Objective:</i></b> To investigate the prevalence of the adeno-associated virus (AAV) in murine rodents and house shrews in 4 provinces of China. <b><i>Methods:</i></b> A total of 469 murine rodents and 19 house shrews were captured between May 2015 and May 2017. <i>Cap</i> gene of AAV sequences was obtained to evaluate the genetic characteristics of rat AAV. <b><i>Results:</i></b> Rat AAVs were found in 54.7% (267/488) of throat swabs, 14.3% (70/488) of fecal samples, and 18.4% (41/223) of serum samples. Rat AAVs were detected in 3 species of murine rodents including <i>Rattus norvegicus</i> (34.8%), <i>R. tanezumi</i> (43.0%), and <i>R. losea</i> (2.3%), and house shrews (<i>Suncus murinus</i>) (26.1%) from the selected sampling sites. Fourteen near-full-length <i>Cap</i> gene sequences, ranging in length from 2,156 to 2,169 nt, were isolated from the fecal samples of <i>R. norvegicus</i> and <i>R. tanezumi</i>. These 14 sequences shared a high identity of 97.4% at the nucleotide level and 99.1% at the amino acid level. Phylogenetic analysis showed that the rat AAV formed a distinct clade, distinguishable from the AAV discovered in humans and in other animals. <b><i>Conclusions:</i></b> A high prevalence of rat AAV that was highly conserved within the <i>Cap</i> gene was found in 3 common murine rodents and house shrews in China.
DOI: 10.6084/m9.figshare.21441564.v1
title: CCK8

description: CCK-8 assay showing the cytotoxicity of AS-t-NK, eNK-EXO treated AS-t-NK eNK cells and NK92/MI cells against SKOV3 cells. <strong> </strong>CCK-8 assay showing the cytotoxicity of eNK-EXO-DDP against SKOV3, COC1/DDP and OV-90 cells. CCK-8 assay results of eNK-EXO against SKOV3, COC1/DDP and IOSE80 cells.
DOI: 10.6084/m9.figshare.8323658.v1
title: Complete sequence of fusion plasmid pL53T

description: pL53T
DOI: 10.15468/dl.j23mks
title: Occurrence Download

description: A dataset containing 3834 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Lomographa bimaculata (Fabricius, 1775)"
 ]
}

 The dataset includes 3834 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009578-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.24514984.v1
title: Raw NMR data for publication: doi: 10.3389/fctls.2023.1275281

description: Raw NMR data for the publication: doi: 10.3389/fctls.2023.1275281
DOI: 10.6084/m9.figshare.28838249.v3
title: SRR3414637.uniq.sorted.bamhisat

description: SRR3414637
DOI: 10.6084/m9.figshare.5695861.v1
title: Tannic extract potential as natural wood preservative of Acacia mearnsii

description: ABSTRACT High toxicity of the preservatives most frequently used in wood treatment and the resulting risks of handling pose a threat to small producers and to the environment. In an attempt to mitigate these problems, the present study was conducted with the objective of evaluating the preservative effect of tannic extract on biodeterioration of Acacia mearnsii wood. For this purpose, untreated and preserved specimens, some with tannin extract and some with a preservative mixture based on CCB (Chromated Copper Borate), were submitted to accelerated rotting trials with the fungus that causes white rot (Pycnoporus sanguineus) for 16 weeks. The evaluations were made with a basis on weight loss and chemical components analysis, and they showed that the natural resistance of Acacia wood is moderate when exposed to the white rot fungus. The tannin concentrations showed similar effects to those of the CBB mixture in all evaluations, i.e., they significantly increased the biological resistance of the material, which started to be classified as very resistant to the fungus. Overall, the results suggest that tannin can be considered as a potential natural preservative product.
DOI: 10.6084/m9.figshare.26003989.v2
title: The genome assembly and annotation of the cricket <i>Gryllus longicercus.</i>

description: Crickets, with over 2,400 described species, are emerging as significant model organisms due to their diversity, global distribution, regenerative abilities, and unique acoustic communication. Here, we present the assembly and annotation of the first New World cricket genome, specifically that of <i>Gryllus longicercus</i>. The genome assembly comprises 1.85Gb distributed across 1,571 scaffolds. Our annotation has identified 19,715 transcripts corresponding to 14,789 gene models.
DOI: 10.6084/m9.figshare.21545505.v1
title: Late toxicity experiment - dietary fibre, irradiation and normal tissue in non-tumour-bearing mice.

description: C57BL/6 mice were fed with low (0.2% cellulose) and high fibre (5% psyllium, 5% psyllium plus 10% resistant starch, 5% psyllium plus 10% inulin) diets for 2 weeks and received 5x5Gy (N=39, late) ionising radiation to their lower abdomen. 16S rRNA sequencing was used for gut microbiota analysis.
DOI: 10.6084/m9.figshare.26414089.v1
title: Supplementary Material for: Efficacy of donor-recipient-matched faecal microbiota transplantation in patients with IBS-D: A single-centre, randomized, double-blind placebo-controlled study

description: Introduction: 
 The imbalance in gut microbiota is contributing to the development and progression of IBS. FMT can improve the gut microbiota, and donor-recipient-matched FMT can help develop individualised treatment plans according to different enterotypes. This study aimed to explore the efficacy of donor-recipient matched FMT in IBS-D and evaluate its effects on gut microbiota.
Methods: 
 Twenty-seven patients with IBS-D were randomly divided into donor-recipient matched FMT group (Group P), random-donor FMT group (Group R) and placebo group (Group B). All participants received corresponding FMT treatment after filling in IBS-S, IBS-QoL, GSRS, HADS questionnaires and having their stool samples collected at 4, 8 and 12 weeks after treatment. Analysed the improvement in the symptoms and the changes in the bacterial flora fo three groups.
Results: 
 1. The IBS-SSS, IBS-Qol, GSRS and anxiety scores of Group P were significantly lower after treatment(P＜0.05). The IBS-Qol scores of Group R was significantly lower after treatment(P＜0.05). 2. Beta diversity analysis showed that the gut microbiota of Group P had an obvious trend of classification after treatment. 3. Seven bacterial genera were related to the differences in the IBS-SSS scores before and after treatment.
Conclusion: 
 Donor-recipient-matched FMT significantly improved the clinical symptoms, quality of life, and anxiety scores of the patients with IBS-D than random-donor FMT.
DOI: 10.6084/m9.figshare.24522811.v1
title: <b>110 cities in the Yangtze River Economic Belt, China</b>

description: <b>Does d</b><b>igitalization mak</b><b>e</b><b> </b><b>u</b><b>rban land use more efficien</b><b>t</b><b>? Evidence from 110 cities in the Yangtze River Economic Belt, China</b>
DOI: 10.6084/m9.figshare.7241678.v3
title: A statistical forecasting approach to metapopulation viability analysis

description: R code for the custom Metropolis-within-Gibbs sampler and data needed to fit spatially-explicit metapopulation models and forecast metapopulation viability.<br>
DOI: 10.6084/m9.figshare.28739171.v1
title: Whole Exome Sequencing Data of Renal Tubulocystic Oncocytoma in the Left Kidney from a 59-Year-Old Female Patient

description: Design: After the DNA samples pass quality assessment, they undergo random fragmentation using ainvolve end repalr, A-talling, ligation of sequencing adapters, fragment size selection, PCR amplificatiorcompletion of the sequencing lilbrary preparation process. This results in the generation of the final DNSubmitted by: The Second Hospital of Dalian Medical UniversitySample: A 59-year-old female samples from left kidney.
DOI: 10.6084/m9.figshare.28792340.v1
title: <b>Code and data for the paper: A multi-scale spatio-temporal modeling framework for disentangling meteorological and anthropogenic drivers of air pollution</b>

description: Data profiles:simulation.R is used to implement the simulation experiment introduced in the third part of the article.empirical model.R implements the method proposed for air pollution empirical study.data folder contains all the data in simulation experiment and empirical study. The details are as follows：Table 1 Details for data and useData filesUseshapefiles for sub_regions, sub_cities, and sub_gridssimulation.Rshapefiles for regions, cities, and grids.empirical model.Rair_data.csvsimulation.R and empirical model.R<br>
DOI: 10.6084/m9.figshare.7707698.v2
title: MySQL Scripts

description: MySQL Database Scripts: <br>We created tables, functions, procedures, indexes, and triggers to instrument the SonarQube database to retrieve some of the automatically deleted records. <br>- All the custom made artifacts as a single script is available in 'sonar_db_updates.sql' file. This script can be run on an installation of a SonarQube (version 6.0.1) database. <br> - To retrieve the required metrics from the database use the script 'project_measures and metrics_multicolumn.sql'.
DOI: 10.6084/m9.figshare.25102940.v1
title: Supplementary Material for: Psychological Treatment of Comorbid Insomnia and Depression: A Double-Blind Randomized Placebo-Controlled Trial

description: <b><i>Introduction:</i></b> Insomnia and depression are highly prevalent disorders and commonly occur together. Cognitive behavioral therapy for insomnia, CBT-I, has been shown to be effective in treating insomnia and also comorbid depression. However, it is unclear whether effects of CBT-I on depression are specific or nonspecific. Also, depressive symptoms often remain too high after CBT-I, indicating a need for improved treatments. The objective was to determine whether combining CBT-I with CBT for depression, without increasing treatment length, reduces both insomnia and depression more than CBT for depression with a placebo insomnia intervention. <b><i>Methods:</i></b> A 12-week double-blind randomized controlled trial with a 6-month follow-up in a psychiatric setting using therapist-guided internet-delivered treatments was conducted. Patients (<i>N</i> = 126) were diagnosed with insomnia disorder and major depression by physicians. Primary outcome measures were as follows: self-rating scales Insomnia Severity Index (ISI) and Montgomery-Åsberg Depression Rating Scale (MADRS-S). <b><i>Results:</i></b> The combined treatment showed specific effects on insomnia severity over the control treatment (<i>p</i> = 0.007) but was not more effective in reducing depression severity. Within-group effects (Cohen’s <i>d</i>) at post and at 6 months were as follows: ISI 1.40 and 1.42 (combined treatment), 0.95 and 1.00 (control); MADRS-S 0.97 and 1.12 (combined), 0.88 and 0.89 (control). <b><i>Conclusions:</i></b> CBT-I shows large specific effects on insomnia severity and is superior to control in this regard. Both treatments had similar effects on depression severity, i.e., combining CBT-I with CBT for depression did not enhance outcomes on depression compared to control. We suggest CBT-I should always be offered to patients with insomnia and depression comorbidity, possibly as the first-hand choice. Combining it with a psychological treatment for depression could be too burdening and may not be beneficial.
DOI: 10.6084/m9.figshare.19419269.v1
title: Supplementary Material for: Requirement of Na+/H+ exchanger NHE1 for vasopressin-induced osteogenic signaling and calcification in human aortic smooth muscle cells

description: Background/Aims: Vasopressin is a powerful stimulator of vascular calcification, augmenting osteogenic signaling in vascular smooth muscle cells (VSMCs) including up-regulation of the transcription factors core-binding factor α-1 (CBFA1), msh homeobox 2 (MSX2), and SRY-Box 9 (SOX9), as well as of tissue-nonspecific alkaline phosphatase (ALPL). Vasopressin-induced osteogenic signaling and calcification require the serum- & glucocorticoid-inducible kinase 1 (SGK1). Known effects of SGK1 include up-regulation of Na+/H+ exchanger 1 (NHE1). NHE1 further participates in the regulation of reactive oxygen species (ROS). NHE1 has been shown to participate in the orchestration of bone mineralization. The present study, thus, explored whether vasopressin modifies NHE1 expression and ROS generation, as well as whether pharmacological inhibition of NHE1 disrupts vasopressin-induced osteogenic signaling and calcification in VSMCs. Methods: Human aortic smooth muscle cells (HAoSMCs) were treated with vasopressin in the absence or presence of SGK1 siRNA, SGK1 inhibitor GSK-650394, and NHE1 blocker cariporide. Transcript levels were determined by using qRT-PCR, protein abundance by western blotting, ROS generation with 2’,7’-dichlorofluorescein diacetate (DCFDA) fluorescence, as well as ALP activity and calcium content by using colorimetric assays. Results: Vasopressin significantly enhanced the NHE1 transcript and protein levels in HAoSMCs, effects significantly blunted by SGK1 inhibition with GSK-650394 or SGK1 siRNA. Vasopressin increased ROS accumulation, an effect significantly blocked by NHE1 inhibitor cariporide. Vasopressin further significantly increased osteogenic markers CBFA1, MSX2, SOX9, and ALPL transcript levels, as well as ALP activity and calcium content in HAoSMCs, all effects significantly blunted by SGK1 silencing or in the presence of GSK-650394 and cariporide. Conclusion: Vasopressin stimulates NHE1 expression and ROS generation, an effect dependent on SGK1 and required for vasopressin-induced stimulation of osteogenic signaling and calcification of VSMCs.
DOI: 10.6084/m9.figshare.28727225.v2
title: <b>The disturbance of soil carbon and nitrogen in big sagebrush ecosystems after mastication</b>

description: Big sagebrush <i>(Artemisia tridentata </i>Nutt.<i>) </i>is the dominant plant species in sagebrush steppe ecosystems across western North America. Similar to other dryland shrub-dominated ecosystems, larger soil carbon and nitrogen pools are found underneath big sagebrush plants in elevated mounds of soil called hummocks than in the interspaces between shrubs. This dynamic creates an “island of fertility” effect that produces spatial heterogeneity within these ecosystems, with under-shrub microsites having more soil carbon and nitrogen than interspace microsites. Shrub removal practices, including mastication, are commonly used to increase grass forage for livestock and wildlife. We examined the effects of mastication on soil carbon and nitrogen pools and spatial distribution, using treated sites with paired controls. At each site, we measured the height of hummocks and took soil samples from under big sagebrush individuals (live and dead) and in the interspace (under perennial grass and bare ground). We found that mastication reduced hummock height, with mean height decreasing from 8±3.4 cm in control sites to 5±3.6 cm in masticated sites. Soil carbon and nitrogen pools under shrubs were significantly greater than in the interspace, but mastication reduced nutrient pools under shrubs and interspaces by approximately 14% for mean soil carbon and 18% for mean soil nitrogen. At the ecosystem-scale, mastication reduced average soil carbon from 1,671±454 g/m<sup>2</sup> in control sites to 1,350±377 g/m<sup>2</sup> and average soil nitrogen from 138±39 g/m<sup>2</sup> to 104±27 g/m<sup>2</sup>. These results improve our understanding of how mastication reduces ecosystem soil carbon and nitrogen storage, as well as disrupts the spatial distribution of organic matter under shrubs, in big sagebrush ecosystems.