cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2b5zj1
title: CSD 2150703: Experimental Crystal Structure Determination

description: Related Article: Liudmila Gorelova, Anna Pakhomova, Georgios Aprilis, Yuqing Yin, Dominique Laniel, Bjoern Winkler, Sergey Krivovichev, Igor Pekov, Natalia Dubrovinskaia and Leonid Dubrovinsky|2022|CSD Communication|||
description: Related Article: Liudmila Gorelova, Anna Pakhomova, Georgios Aprilis, Yuqing Yin, Dominique Laniel, Bjoern Winkler, Sergey Krivovichev, Igor Pekov, Natalia Dubrovinskaia, Leonid Dubrovinsky|2022|Inorg.Chem.Front.|9|1735|doi:10.1039/D2QI00101B
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bbxwh
title: CSD 2155457: Experimental Crystal Structure Determination

description: Related Article: Jason F. Khoury, Bingzheng Han, Milena Jovanovic, Ratnadwip Singha, Xiaoyu Song, Raquel Queiroz, Nai-Phuan Ong, Leslie M. Schoop|2022|J.Am.Chem.Soc.|144|9785|doi:10.1021/jacs.2c02281
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bcgv1
title: CSD 2155983: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bcgw2
title: CSD 2155984: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bcgx3
title: CSD 2155985: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.5cece1bx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (14 records)
DOI: 10.25505/fiz.icsd.cc2bcgy4
title: CSD 2155986: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bcgz5
title: CSD 2155987: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bch07
title: CSD 2155988: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bch18
title: CSD 2155989: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25505/fiz.icsd.cc2bch29
title: CSD 2155990: Experimental Crystal Structure Determination

description: Related Article: Anna A. Berseneva, Vladislav V. Klepov, Koushik Pal, Kelly Seeley, Daniel Koury, Joseph Schaeperkoetter, Joshua T. Wright, Scott T. Misture, Mercouri G. Kanatzidis, Chris Wolverton, Artem V. Gelis, Hans-Conrad zur Loye|2022|J.Am.Chem.Soc.|144|13773|doi:10.1021/jacs.2c04783
description: An entry from the Inorganic Crystal Structure Database, the world’s repository for inorganic crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the joint CCDC and FIZ Karlsruhe Access Structures service and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.23580270
title: Surgery and Wound Care SWAT Systematic Review Data Extraction Form

description: Surgery and Wound Care SWAT Systematic Review - Completed Data Extraction Form/data set
DOI: 10.6084/m9.figshare.23580270.v1
title: Surgery and Wound Care SWAT Systematic Review Data Extraction Form

description: Surgery and Wound Care SWAT Systematic Review - Completed Data Extraction Form/data set
DOI: 10.6084/m9.figshare.23580267
title: Data for Applying atomistic neural networks to bias conformer ensemble towards bioactive-like conformations

description: This folder contains all data required to reproduce the work "Applying atomistic neural networks to bias conformer ensemble towards bioactive-like conformations".
DOI: 10.6084/m9.figshare.23580267.v1
title: Data for Applying atomistic neural networks to bias conformer ensemble towards bioactive-like conformations

description: This folder contains all data required to reproduce the work "Applying atomistic neural networks to bias conformer ensemble towards bioactive-like conformations".
DOI: 10.5281/zenodo.8083375
title: Podcast Dataset

description: Dataset of 1024 freely accessible podcast episodes. Link to the respective audio file is provided.
DOI: 10.5281/zenodo.8083374
title: Podcast Dataset

description: Dataset of 1024 freely accessible podcast episodes. Link to the respective audio file is provided.
DOI: 10.6084/m9.figshare.22903640
title: Using fimbrin to quantify the endocytic subapical collar during polarized growth in three filamentous fungi

description: Filamentous fungi produce specialized cells called hyphae. These cells grow by polarized extension at their apex, which is maintained by the balance of endocytosis and exocytosis at the apex. Although endocytosis has been well characterized in other organisms, the details of endocytosis and its role in maintaining polarity during hyphal growth in filamentous fungi is comparatively sparsely studied. In recent years, a concentrated region of protein activity that trails the growing apex of hyphal cells has been discovered. This region, dubbed the “endocytic collar” (EC), is a dynamic 3-dimensional region of concentrated endocytic activity, the disruption of which results in the loss of hyphal polarity. Here, fluorescent protein–tagged fimbrin was used as a marker to map the collar during growth of hyphae in three fungi: <i>Aspergillus nidulans, Colletotrichum graminicola</i>, and <i>Neurospora crassa</i>. Advanced microscopy techniques and novel quantification strategies were then utilized to quantify the spatiotemporal localization and recovery rates of fimbrin in the EC during hyphal growth. Correlating these variables with hyphal growth rate revealed that the strongest observed relationship with hyphal growth is the distance by which the EC trails the apex, and that measured endocytic rate does not correlate strongly with hyphal growth rate. This supports the hypothesis that endocytic influence on hyphal growth rate is better explained by spatiotemporal regulation of the EC than by the raw rate of endocytosis.
DOI: 10.6084/m9.figshare.23150665
title: Fifteen new species from the myxomycete genus <i>Lycogala</i>

description: Based on a study of 255 collections from four continents and four floristic kingdoms, we describe 15 new species of the genus <i>Lycogala</i>. The new species, all morphologically close to <i>L. epidendrum, L. exiguum</i>, and <i>L. confusum</i>, differ from each other by the structure of the peridium and, in some cases, also by the color of the fresh spore mass and the ornamentation of the capillitium and spores. Species delimitation is confirmed by two independently inherited molecular markers, as well as previously performed tests of reproductive isolation and genetic distances. We studied authentic material of <i>L. exiguum</i> and <i>L. confusum</i> and found fresh specimens of these species, which allowed us to obtain molecular barcodes and substantiate the separation of new species from these taxa. We propose to retain the name <i>L. epidendrum</i> for the globally most abundant species, for which we provide a more precise description and a neotypification. Two formerly described species, <i>L. leiosporum</i> and <i>L. fuscoviolaceum</i>, we consider to be dubious. We do not recognize the species <i>L. terrestre</i>.
DOI: 10.6084/m9.figshare.22802626
title: Comparative genomics and phylogenomic investigation of the class Geoglossomycetes provide insights into ecological specialization and the systematics of Pezizomycotina

description: Despite their global presence and ubiquity, members of the class Geoglossomycetes (Pezizomycotina, Ascomycota) are understudied systematically and ecologically. These fungi have long been presumed saprobic due to their occurrence in or near leaf litter and soils. Additionally, they lack an apparent association with other organisms, reinforcing this perception. However, observations of sporocarps near ericaceous shrubs have given rise to an alternative hypothesis that members of Geoglossomycetes may form ericoid mycorrhizae or ectomycorrhizae. This claim, however, has yet to be confirmed via microscopy or amplicon-based studies examining root communities. As a result, our current understanding of their ecology is based on cursory observations. This study presents a comparative analysis of genomic signatures related to ecological niche to investigate the hypothesis of an ericoid mycorrhizal or ectomycorrhizal ecology in the class. We compared the carbohydrate-active enzyme (CAZyme) and secondary metabolite contents of six newly sequenced Geoglossomycetes genomes with those of fungi representing specific ecologies across Pezizomycotina. Our analysis reveals CAZyme and secondary metabolite content patterns consistent with ectomycorrhizal (EcM) members of Pezizomycotina. Specifically, we found a reduction in CAZyme-encoding genes and secondary metabolite clusters that suggests a mutualistic ecology. Our work includes the broadest taxon sampling for a phylogenomic study of Pezizomycotina to date. It represents the first functional genomic and genome-scale phylogenetic study of the class Geoglossomycetes and improves the foundational knowledge of the ecology and evolution of these understudied fungi.
DOI: 10.6084/m9.figshare.22858079
title: Population structure and genetic diversity of <i>Fusarium graminearum</i> from southwestern Russia and the Russian Far East as compared with northern Europe and North America

description: Genetic variation at variable number tandem repeat (VNTR) markers was used to assess population structure and diversity among 296 <i>Fusarium graminearum</i> isolates from northern Europe (Finland, northwestern Russia, and Norway), southern Europe (southwestern and western Russia), and Asia (Siberia and the Russian Far East). We identified at least two highly differentiated and geographically structured genetic populations (E1 and E2) in Eurasia (Φ<sub>PT</sub> = 0.35). Isolates from northern Europe were almost exclusively from the E1 population (95.6%) and had the 3ADON (3-acetyldeoxynivalenol) trichothecene genotype (97.3%). In contrast, all isolates from southern Europe were from the E2 population and 94.4% had the 15ADON (15-acetyldeoxynivalenol) genotype. The E2 population also predominated in the Asian sampling locations (92.7%) where 3ADON and 15ADON genotypes occurred at nearly equal frequencies. Southern European isolates were more closely related to those from Asia (Φ<sub>PT </sub>= 0.06) than to geographically closer populations from northern Europe (Φ<sub>PT</sub> ≥ 0.31). Northern European populations also harbored substantially less genetic diversity (<i>Ne</i> ≤ 2.1) than populations in southern Europe or Asia (<i>Ne</i> ≥ 3.4), indicative of a selective sweep or recent introduction and subsequent range expansion in northern Europe. Bayesian analyses incorporating previously described genetic populations from North America (NA1 and NA2) surprisingly identified NA2 and E2 as a single genetic population, consistent with hypotheses of a recent Eurasian origin for NA2. Additionally, more than 10% of the isolates from Asia and southern Europe were assigned to the NA1 population, indicating recent introductions of NA1 into parts of Eurasia. Collectively, these results demonstrate that there are at least three genetic populations of <i>F. graminearum</i> in the Northern Hemisphere and indicate that population-level diversity in Eurasia and North America has been shaped by recent transcontinental introductions.
DOI: 10.6084/m9.figshare.22903640.v1
title: Using fimbrin to quantify the endocytic subapical collar during polarized growth in three filamentous fungi

description: Filamentous fungi produce specialized cells called hyphae. These cells grow by polarized extension at their apex, which is maintained by the balance of endocytosis and exocytosis at the apex. Although endocytosis has been well characterized in other organisms, the details of endocytosis and its role in maintaining polarity during hyphal growth in filamentous fungi is comparatively sparsely studied. In recent years, a concentrated region of protein activity that trails the growing apex of hyphal cells has been discovered. This region, dubbed the “endocytic collar” (EC), is a dynamic 3-dimensional region of concentrated endocytic activity, the disruption of which results in the loss of hyphal polarity. Here, fluorescent protein–tagged fimbrin was used as a marker to map the collar during growth of hyphae in three fungi: <i>Aspergillus nidulans, Colletotrichum graminicola</i>, and <i>Neurospora crassa</i>. Advanced microscopy techniques and novel quantification strategies were then utilized to quantify the spatiotemporal localization and recovery rates of fimbrin in the EC during hyphal growth. Correlating these variables with hyphal growth rate revealed that the strongest observed relationship with hyphal growth is the distance by which the EC trails the apex, and that measured endocytic rate does not correlate strongly with hyphal growth rate. This supports the hypothesis that endocytic influence on hyphal growth rate is better explained by spatiotemporal regulation of the EC than by the raw rate of endocytosis.
DOI: 10.6084/m9.figshare.23398819
title: Remarkable fungal biodiversity on northern Belgium bats and hibernacula

description: Bats can be affected by fungal pathogens such as <i>Pseudogymnoascus destructans</i>, the causative agent of the white-nose syndrome. Their body surface can also be colonized by fungal commensals or carry transient fungal species and participate in their dispersal. In this study, 114 bat specimens belonging to seven species were sampled from various locations in northern Belgium. Culture-based methods revealed an important mycological diversity, with a total of 209 different taxa out of the 418 isolates. Overall, a mean of 3.7 taxa per bat was recorded, but significant differences were observed between sampling sites and seasons. The mycobiomes were dominated by cosmopolitan and plant-associated species, in particular from the genera <i>Cladosporium, Penicillium</i>, and <i>Aspergillus</i>. Other species known to be related to bats or their environment, such as <i>Apiotrichum otae</i>, were also retrieved. Sampling of hibernacula indicated that diverse fungal species can inhabit these sites, including a yet undescribed <i>Pseudogymnoascus</i> species, distinct from <i>Ps. destructans</i>, namely, <i>Ps. cavicola</i>.
DOI: 10.6084/m9.figshare.22802626.v1
title: Comparative genomics and phylogenomic investigation of the class Geoglossomycetes provide insights into ecological specialization and the systematics of Pezizomycotina

description: Despite their global presence and ubiquity, members of the class Geoglossomycetes (Pezizomycotina, Ascomycota) are understudied systematically and ecologically. These fungi have long been presumed saprobic due to their occurrence in or near leaf litter and soils. Additionally, they lack an apparent association with other organisms, reinforcing this perception. However, observations of sporocarps near ericaceous shrubs have given rise to an alternative hypothesis that members of Geoglossomycetes may form ericoid mycorrhizae or ectomycorrhizae. This claim, however, has yet to be confirmed via microscopy or amplicon-based studies examining root communities. As a result, our current understanding of their ecology is based on cursory observations. This study presents a comparative analysis of genomic signatures related to ecological niche to investigate the hypothesis of an ericoid mycorrhizal or ectomycorrhizal ecology in the class. We compared the carbohydrate-active enzyme (CAZyme) and secondary metabolite contents of six newly sequenced Geoglossomycetes genomes with those of fungi representing specific ecologies across Pezizomycotina. Our analysis reveals CAZyme and secondary metabolite content patterns consistent with ectomycorrhizal (EcM) members of Pezizomycotina. Specifically, we found a reduction in CAZyme-encoding genes and secondary metabolite clusters that suggests a mutualistic ecology. Our work includes the broadest taxon sampling for a phylogenomic study of Pezizomycotina to date. It represents the first functional genomic and genome-scale phylogenetic study of the class Geoglossomycetes and improves the foundational knowledge of the ecology and evolution of these understudied fungi.
DOI: 10.6084/m9.figshare.23150665.v1
title: Fifteen new species from the myxomycete genus <i>Lycogala</i>

description: Based on a study of 255 collections from four continents and four floristic kingdoms, we describe 15 new species of the genus <i>Lycogala</i>. The new species, all morphologically close to <i>L. epidendrum, L. exiguum</i>, and <i>L. confusum</i>, differ from each other by the structure of the peridium and, in some cases, also by the color of the fresh spore mass and the ornamentation of the capillitium and spores. Species delimitation is confirmed by two independently inherited molecular markers, as well as previously performed tests of reproductive isolation and genetic distances. We studied authentic material of <i>L. exiguum</i> and <i>L. confusum</i> and found fresh specimens of these species, which allowed us to obtain molecular barcodes and substantiate the separation of new species from these taxa. We propose to retain the name <i>L. epidendrum</i> for the globally most abundant species, for which we provide a more precise description and a neotypification. Two formerly described species, <i>L. leiosporum</i> and <i>L. fuscoviolaceum</i>, we consider to be dubious. We do not recognize the species <i>L. terrestre</i>.