cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5111613
title: Remote-sensing measurements and model simulations of peroxyacetyl nitrate (PAN)

description: Ground-based FTIR and IASI-A and -B measurements of PAN, supplemented with GEOS-Chem simulations. End users of these data sets are invited to contact the authors to make sure they are using the data properly and check about the possible availability of more recent products.
description: The University of Liège (ULiège) team has been primarily supported by the Fonds de la Recherche Scientifique (F.R.S. – FNRS, Brussels, Belgium; grant no. J.0147.18), and by the GAW-CH program of MeteoSwiss (Zürich, Switzerland). E. Mahieu is a Senior Research Associate with the F.R.S. – FNRS. His stay at the Lauder station, New Zealand, was supported by the F.R.S. – FNRS mobility grant n° 35143414. We thank the International Foundation High Altitude Research Stations Jungfraujoch and Gornergrat (HFSJG, Bern) for supporting the facilities needed to perform the FTIR observations at Jungfraujoch. The development of the IASI PAN product has been supported by the project OCTAVE (Oxygenated Compounds in the Tropical Atmosphere: Variability and Exchanges, http://octave.aeronomie.be) of the Belgian Research Action through Interdisciplinary Networks (BRAIN-be) research program (2017–2021; Research project BR/175/A2/OCTAVE) and by the IASI.Flow Prodex arrangement (ESA-BELSPO). L. Clarisse is Research Associate supported by the F. R. S.-FNRS. IASI is a joint mission of Eumetsat and the Centre National d'Etudes Spatiales (CNES, France). The IASI Level-1C data are distributed in near real time by Eumetsat through the EumetCast system distribution. The University of Bremen work has been supported by the German research foundation (DFG) in the project no. 268020496-TRR 172, within the Transregional Collaborative Research Center "ArctiC Amplification: Climate Relevant Atmospheric and SurfaCe Processes, and Feedback Mechanisms (AC)3" in subproject E02. The University of Bremen has further been funded by the German Ministry of Education and Research (BMBF) in the project TROSTRA (01LG1904A) and the by Senate of Bremen. We also thank the AWI Bremerhaven for logistical support at the AWIPEV station in Ny Ålesund and the personnel of the AWIPEV for their work. Eureka measurements were made at PEARL by the Canadian Network for the Detection of Atmospheric Change (CANDAC), primarily supported by the Natural Sciences and Engineering Research Council of Canada, the Canadian Space Agency, and Environment and Climate Change Canada (ECCC). We thank CANDAC/PEARL/PAHA PI James Drummond, Canadian Arctic ACE/OSIRIS Validation Campaign PI Kaley Walker, PEARL Site Manager Pierre Fogal, CANDAC Data Manager Yan Tsehtik, the CANDAC operators, and the staff at ECCC's Eureka Weather Station for their contributions to data acquisition, and for logistical and on-site support.
description: {"references": ["Mahieu et al (2021): First retrievals of peroxyacetyl nitrate (PAN) from ground-based FTIR solar spectra recorded at remote sites, comparison with model and satellite data"]}
DOI: 10.5281/zenodo.5111612
title: Remote-sensing measurements and model simulations of peroxyacetyl nitrate (PAN)

description: Ground-based FTIR and IASI-A and -B measurements of PAN, supplemented with GEOS-Chem simulations. End users of these data sets are invited to contact the authors to make sure they are using the data properly and check about the possible availability of more recent products.
description: The University of Liège (ULiège) team has been primarily supported by the Fonds de la Recherche Scientifique (F.R.S. – FNRS, Brussels, Belgium; grant no. J.0147.18), and by the GAW-CH program of MeteoSwiss (Zürich, Switzerland). E. Mahieu is a Senior Research Associate with the F.R.S. – FNRS. His stay at the Lauder station, New Zealand, was supported by the F.R.S. – FNRS mobility grant n° 35143414. We thank the International Foundation High Altitude Research Stations Jungfraujoch and Gornergrat (HFSJG, Bern) for supporting the facilities needed to perform the FTIR observations at Jungfraujoch. The development of the IASI PAN product has been supported by the project OCTAVE (Oxygenated Compounds in the Tropical Atmosphere: Variability and Exchanges, http://octave.aeronomie.be) of the Belgian Research Action through Interdisciplinary Networks (BRAIN-be) research program (2017–2021; Research project BR/175/A2/OCTAVE) and by the IASI.Flow Prodex arrangement (ESA-BELSPO). L. Clarisse is Research Associate supported by the F. R. S.-FNRS. IASI is a joint mission of Eumetsat and the Centre National d'Etudes Spatiales (CNES, France). The IASI Level-1C data are distributed in near real time by Eumetsat through the EumetCast system distribution. The University of Bremen work has been supported by the German research foundation (DFG) in the project no. 268020496-TRR 172, within the Transregional Collaborative Research Center "ArctiC Amplification: Climate Relevant Atmospheric and SurfaCe Processes, and Feedback Mechanisms (AC)3" in subproject E02. The University of Bremen has further been funded by the German Ministry of Education and Research (BMBF) in the project TROSTRA (01LG1904A) and the by Senate of Bremen. We also thank the AWI Bremerhaven for logistical support at the AWIPEV station in Ny Ålesund and the personnel of the AWIPEV for their work. Eureka measurements were made at PEARL by the Canadian Network for the Detection of Atmospheric Change (CANDAC), primarily supported by the Natural Sciences and Engineering Research Council of Canada, the Canadian Space Agency, and Environment and Climate Change Canada (ECCC). We thank CANDAC/PEARL/PAHA PI James Drummond, Canadian Arctic ACE/OSIRIS Validation Campaign PI Kaley Walker, PEARL Site Manager Pierre Fogal, CANDAC Data Manager Yan Tsehtik, the CANDAC operators, and the staff at ECCC's Eureka Weather Station for their contributions to data acquisition, and for logistical and on-site support.
description: {"references": ["Mahieu et al (2021): First retrievals of peroxyacetyl nitrate (PAN) from ground-based FTIR solar spectra recorded at remote sites, comparison with model and satellite data"]}
DOI: 10.5281/zenodo.5410401
title: Jannovar v0.36 databases / raw data (update-1)

description: This data set contains the pre-built databases for Jannovar v0.36 and the raw data to build it. The files for mm10 and mm38 are in the "jannovar-data-0.36.zip" while the others are in "jannovar-data-0.34.zip". I provided the files in the hope that they are useful. See the Jannovar author list on Github for a more complete list of contributors to the project. https://github.com/charite/jannovar
DOI: 10.5281/zenodo.4906579
title: Jannovar v0.36 databases / raw data (update-1)

description: This data set contains the pre-built databases for Jannovar v0.36 and the raw data to build it. The files for mm10 and mm38 are in the "jannovar-data-0.36.zip" while the others are in "jannovar-data-0.34.zip". I provided the files in the hope that they are useful. See the Jannovar author list on Github for a more complete list of contributors to the project. https://github.com/charite/jannovar
DOI: 10.5281/zenodo.5413149
title: DCASE 2021 Task 5: Few-shot Bioacoustic Event Detection Evaluation Set

description: <strong>General Description</strong> The evaluation set for task 5 of DCASE 2021 "Few-shot Bioacoustic Event Detection" consists of 31 audio files acquired from different bioacoustic sources. In Evaluation_Set_Annotations: the first 5 annotations are provided for each file, with events marked as positive (POS) for the class of interest. This is the same setup used during the DCASE 2021 challenge. In Evaluation_Set_Full_Annotations: the full annotations are provided for each file, with events marked as positive (POS) or unknown (UNK) for the class of interest. <strong>Folder Structure</strong> <em>Evaluation_Set.zip contains audio files and annotation files with 5 first POS events (as used during DCASE 2021 challenge)</em> |__Evaluation_Set/ |___DC/ |____*.wav |____*.csv |___ME/ |____*.wav |____*.csv |___ML/ |____*.wav |____*.csv <em>Evaluation_Set_Audio.zip</em> has the same structure but contains only the *.wav files. <em>Evaluation_Set_Annotations.zip</em> has the same structure but contains only the *.csv files with first 5 POS annotations. <em>Evaluation_Set_Full_Annotations.zip</em> has the same structure but contains only the *.csv files with all POS annotations. The subfolders denote different recording sources and there may or may not be overlap between classes of interest from different wav files. <strong>Annotation structure</strong> Each line of the annotation csv represents an event in the audio file. The column descriptions are as follows:<br> [ Audiofilename, Starttime, Endtime, Q ] <strong>Classes</strong> DCASE2021_task5_evaluation_set.csv provides a table with class code correspondance to class name for all the recordings of the Evaluation set. DCASE2021_task5_evaluation_set.csv<br> -------------------<br> dataset, recording, class_code, class_name <strong>Development Set</strong> The development set for the same task can be found at: https://doi.org/10.5281/zenodo.5412896 <strong>Open Access</strong> This dataset is available under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.<br> <strong>Contact info</strong> Please send any feedback or questions to:<br> Veronica Morfi: g.v.morfi@qmul.ac.uk
DOI: 10.5281/zenodo.4862476
title: DCASE 2021 Task 5: Few-shot Bioacoustic Event Detection Evaluation Set

description: <strong>General Description</strong> The evaluation set for task 5 of DCASE 2021 "Few-shot Bioacoustic Event Detection" consists of 31 audio files acquired from different bioacoustic sources. In Evaluation_Set_Annotations: the first 5 annotations are provided for each file, with events marked as positive (POS) for the class of interest. This is the same setup used during the DCASE 2021 challenge. In Evaluation_Set_Full_Annotations: the full annotations are provided for each file, with events marked as positive (POS) or unknown (UNK) for the class of interest. <strong>Folder Structure</strong> <em>Evaluation_Set.zip contains audio files and annotation files with 5 first POS events (as used during DCASE 2021 challenge)</em> |__Evaluation_Set/ |___DC/ |____*.wav |____*.csv |___ME/ |____*.wav |____*.csv |___ML/ |____*.wav |____*.csv <em>Evaluation_Set_Audio.zip</em> has the same structure but contains only the *.wav files. <em>Evaluation_Set_Annotations.zip</em> has the same structure but contains only the *.csv files with first 5 POS annotations. <em>Evaluation_Set_Full_Annotations.zip</em> has the same structure but contains only the *.csv files with all POS annotations. The subfolders denote different recording sources and there may or may not be overlap between classes of interest from different wav files. <strong>Annotation structure</strong> Each line of the annotation csv represents an event in the audio file. The column descriptions are as follows:<br> [ Audiofilename, Starttime, Endtime, Q ] <strong>Classes</strong> DCASE2021_task5_evaluation_set.csv provides a table with class code correspondance to class name for all the recordings of the Evaluation set. DCASE2021_task5_evaluation_set.csv<br> -------------------<br> dataset, recording, class_code, class_name <strong>Development Set</strong> The development set for the same task can be found at: https://doi.org/10.5281/zenodo.5412896 <strong>Open Access</strong> This dataset is available under a Creative Commons Attribution 4.0 International (CC BY 4.0) license.<br> <strong>Contact info</strong> Please send any feedback or questions to:<br> Veronica Morfi: g.v.morfi@qmul.ac.uk
DOI: 10.5517/ccdc.csd.cc2858wm
title: CCDC 2090450: Experimental Crystal Structure Determination

description: Related Article: Rachel Trammell, Alexandra Cordova, Shuming Zhang, Sunipa Goswami, Richel Murata, Maxime A. Siegler, Isaac Garcia‐Bosch|2021|Eur.J.Org.Chem.|32|4536|doi:10.1002/ejoc.202100783
DOI: 10.5281/zenodo.5410324
title: TIRF imaging data of neutrophils migrating underneath endothelial cells

description: This data is used in the publication "Endothelial Focal Adhesions Are Functional Obstacles for Leukocytes During Basolateral Crawling": https://www.frontiersin.org/articles/10.3389/fimmu.2021.667213/full <strong>TIRF Microscopy</strong> Lentiviral transduction was used to generate an endothelial cell line expressing mNeonGreen-Paxillin (derived from addgene plasmid # 129604). Cells were imaged with a Nikon Ti-E microscope equipped with a motorized TIRF Illuminator unit, a 60x TIRF objective (60x Plan Apo, Oil DIC N2, NA =1.49, WD = 120 um) and Perfect Focus System. Images were acquired with an Andor iXon 897 EMCCD camera and the Nikon NIS elements software. mNeonGreen was imaged using the 488 nm laser line and calcein red-orange was imaged using the 561 nm laser line. A quad split dichroic mirror (405 nm, 488 nm, 561 nm, 640 nm) was used in combination with dual band pass emission filter (515 to 545 nm, 600 to 650 nm). To achieve a larger field of view a 3 x 3 tile scans was acquired with 15% overlap stitching on the GFP channel. Time lapse images were taken every 10 s.
description: This work was supported by an NWO ALW-OPEN grant ALWOP.306
DOI: 10.5281/zenodo.5410323
title: TIRF imaging data of neutrophils migrating underneath endothelial cells

description: This data is used in the publication "Endothelial Focal Adhesions Are Functional Obstacles for Leukocytes During Basolateral Crawling": https://www.frontiersin.org/articles/10.3389/fimmu.2021.667213/full <strong>TIRF Microscopy</strong> Lentiviral transduction was used to generate an endothelial cell line expressing mNeonGreen-Paxillin (derived from addgene plasmid # 129604). Cells were imaged with a Nikon Ti-E microscope equipped with a motorized TIRF Illuminator unit, a 60x TIRF objective (60x Plan Apo, Oil DIC N2, NA =1.49, WD = 120 um) and Perfect Focus System. Images were acquired with an Andor iXon 897 EMCCD camera and the Nikon NIS elements software. mNeonGreen was imaged using the 488 nm laser line and calcein red-orange was imaged using the 561 nm laser line. A quad split dichroic mirror (405 nm, 488 nm, 561 nm, 640 nm) was used in combination with dual band pass emission filter (515 to 545 nm, 600 to 650 nm). To achieve a larger field of view a 3 x 3 tile scans was acquired with 15% overlap stitching on the GFP channel. Time lapse images were taken every 10 s.
description: This work was supported by an NWO ALW-OPEN grant ALWOP.306
DOI: 10.5519/qd.gwqr112t
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (48 records)
DOI: 10.5281/zenodo.5410641
title: SHSY5Y_differentiation_datafiles

description: SHSY5Y_differentiation_datafiles is a directory of data accompanying the manuscript: <strong>Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes</strong> David J Wright<sup>1</sup>, Nicola Hall<sup>2,3</sup>, Naomi Irish<sup>1</sup>, Angela L Man<sup>1</sup>, Will Glynn<sup>1</sup>, Arne Mould<sup>2,3</sup>, Alejandro De Los Angeles<sup>2,3</sup>, Emily Angiolini<sup>1</sup>, David Swarbreck<sup>1</sup>, Karim Gharbi<sup>1</sup>, Elizabeth M Tunbridge<sup>2,3</sup>, Wilfried Haerty<sup>1</sup>* <sup>1</sup>Earlham Institute, Norwich Research Park, Norfolk NR4 7UZ, UK <sup>2</sup>Department of Psychiatry, Medical Sciences Division, University of Oxford, Oxfordshire OX3 3JX, UK <sup>3</sup>Oxford Health NHS Foundation Trust, Oxford, Oxfordshire OX3 7JX, UK --- It consists of subdirectories of differential expression (DE), differential transcript usage (DTU), synthetic spike-in assessments (SEQUINS), a gene specific case study (CACNA2D2) and a custom annotation GTF and corresponding transcriptome fasta (ANNOTATION), along with a README.txt describing contents. These data are accompanied by the corresponding analysis scripts that can be accessed from: <strong>https://github.com/TGAC/SHSY5Y_differentiation. </strong>
DOI: 10.5281/zenodo.4727856
title: SHSY5Y_differentiation_datafiles

description: SHSY5Y_differentiation_datafiles is a directory of data accompanying the manuscript: <strong>Long read sequencing reveals novel isoforms and insights into splicing regulation during cell state changes</strong> David J Wright<sup>1</sup>, Nicola Hall<sup>2,3</sup>, Naomi Irish<sup>1</sup>, Angela L Man<sup>1</sup>, Will Glynn<sup>1</sup>, Arne Mould<sup>2,3</sup>, Alejandro De Los Angeles<sup>2,3</sup>, Emily Angiolini<sup>1</sup>, David Swarbreck<sup>1</sup>, Karim Gharbi<sup>1</sup>, Elizabeth M Tunbridge<sup>2,3</sup>, Wilfried Haerty<sup>1</sup>* <sup>1</sup>Earlham Institute, Norwich Research Park, Norfolk NR4 7UZ, UK <sup>2</sup>Department of Psychiatry, Medical Sciences Division, University of Oxford, Oxfordshire OX3 3JX, UK <sup>3</sup>Oxford Health NHS Foundation Trust, Oxford, Oxfordshire OX3 7JX, UK --- It consists of subdirectories of differential expression (DE), differential transcript usage (DTU), synthetic spike-in assessments (SEQUINS), a gene specific case study (CACNA2D2) and a custom annotation GTF and corresponding transcriptome fasta (ANNOTATION), along with a README.txt describing contents. These data are accompanied by the corresponding analysis scripts that can be accessed from: <strong>https://github.com/TGAC/SHSY5Y_differentiation. </strong>
DOI: 10.25824/redu/w0nvnh
title: Dados brutos.rar
DOI: 10.25824/redu/cqpt5l
title: Visible light-driven metal-free synthesis of highly substituted pyrroles through C–H functionalisation

description: A visible light-driven metal-free route to access unprecedented highly substituted pyrroles is reported. Benzophenone is employed as an accessible photocatalyst under solvent-free conditions to deliver targeted products in high yields. A photoinduced C–H functionalisation renders structural variety and complexity to the final products showcasing the potential of the transformation.
DOI: 10.5281/zenodo.5387520
title: Dataset#1 and Dataset#2 for Making drawings speak through mathematical metrics

description: Dataset 1 and Dataset 2 for the paper Making drawings speak through mathematical metrics Figurative drawing is a skill that takes time to learn, and evolves during different childhood phases that begin with scribbling and end with representational drawing. Between these phases, it is difficult to assess when and how children demonstrate intentions and representativeness in their drawings. The marks produced are increasingly goal-oriented and efficient as the child’s skills progress from scribbles to figurative drawings. Pre-figurative activities provide an opportunity to focus on drawing processes. We applied fourteen metrics to two different datasets (N=65 and N=345) to better understand the intentional and representational processes behind drawing, and combined these metrics using principal component analysis (PCA) in different biologically significant dimensions. Three dimensions were identified: efficiency based on spatial metrics, diversity with colour metrics, and temporal sequentiality. The metrics at play in each dimension are similar for both datasets, and PCA explains 77% of the variance in both datasets. These analyses differentiate scribbles by children from those drawn by adults. The three dimensions highlighted by this study provide a better understanding of the emergence of intentions and representativeness in drawings. We have already discussed the perspectives of such findings in Comparative Psychology and Evolutionary Anthropology.
DOI: 10.5281/zenodo.5413860
title: Αξιολόγηση μαθημάτων Αθανασίου Βέρδη

description: Δεδομένα αξιολόγηση μαθημάτων ακαδημαϊκού έτους 2020-2021
DOI: 10.6084/m9.figshare.16402662
title: Dataset for assessment of flow within developing chicken vasculature and biofabricated vascularized tissues using multimodal imaging techniques

description: The datasets generated during and/or analyzed during this study to reproduce:-Fig. 1(A), top-Fig. 1(C)-Fig. 2 raw color images-Fig. 3(C-H)-Figs. 4-5-Fig. 6(A)-Fig. 7(C-H)-Supplementary Fig. S4-Supplementary Fig. S5(B-F)
DOI: 10.6084/m9.figshare.16415530.v1
title: Awareness, knowledge and practice of healthcare professionals following implementation of a Pregnancy Prevention Program for sodium valproate in Ireland: a multi-stakeholder cross-sectional study

description: To establish awareness, knowledge, use and experience in practice of a sodium valproate pregnancy prevention program (PPP) in Ireland (“prevent”) among three healthcare professional (HCP) groups. A cross-sectional study using anonymous online surveys was conducted among general practitioners (GPs), pharmacists, and specialist consultants. Descriptive analyses are presented. HCP response rates were 5.8% for GPs (90/1544), 10.7% for pharmacists (219/2052), and 7.6% for specialists (17/224). Across HCP groups, there was high awareness (&gt;90%) for specialist referral when female valproate patients are planning pregnancy, or become pregnant, but less awareness to refer annually for specialist review. While awareness of a possible teratogenic effect at any stage of pregnancy was high (&gt;80%), most GPs (62.2%, 95% CI: 51.3, 71.9%) and community pharmacists (53.1%, 95% CI: 43.2, 62.8%) were unsure of the magnitude of risk for developmental disorders, while most specialists under-estimated this risk (46.7%, 95% CI: 24.8, 69.9%). Although &gt;70% of the respondents identified valproate to be contraindicated in any woman of childbearing potential unless the conditions of the PPP are fulfilled, experience implementing key elements in practice varied. Our findings suggest continued effort is needed to ensure optimal implementation of “prevent” into clinical practice in Ireland.
DOI: 10.25646/8989
title: Tagesdaten-CSV aus dem DIVI-Intensivregister

description: Die Tagesdaten-CSV entspricht einem Auszug der Daten des DIVI-Intensivregisters. Die Datei enthält eine Aggregation der aktuellsten Meldungen pro Landkreis. Es werden die aktuell gemeldeten Anzahlen der COVID-19 Intensivfälle sowie die gemeldeten intensivmedizinischen Behandlungskapazitäten angezeigt. Die Tagesdaten-CSV liefert dabei ausschließlich einen Blick auf die Daten gemäß dem Stand des betrachteten Tages. Die Daten sind im situationsbedingten Kontext aufbereitet, damit sind verschiedene Tagesdaten-CSVs u.U. nicht direkt miteinander vergleichbar. Die aktuellsten Meldungen werden im gewählten Betrachtungszeitfenster über alle Meldebereiche und Standorte aufsummiert. Weitere Informationen sind zu finden unter https://www.intensivregister.de/#/faq
DOI: 10.6084/m9.figshare.16415530
title: Awareness, knowledge and practice of healthcare professionals following implementation of a Pregnancy Prevention Program for sodium valproate in Ireland: a multi-stakeholder cross-sectional study

description: To establish awareness, knowledge, use and experience in practice of a sodium valproate pregnancy prevention program (PPP) in Ireland (“prevent”) among three healthcare professional (HCP) groups. A cross-sectional study using anonymous online surveys was conducted among general practitioners (GPs), pharmacists, and specialist consultants. Descriptive analyses are presented. HCP response rates were 5.8% for GPs (90/1544), 10.7% for pharmacists (219/2052), and 7.6% for specialists (17/224). Across HCP groups, there was high awareness (&gt;90%) for specialist referral when female valproate patients are planning pregnancy, or become pregnant, but less awareness to refer annually for specialist review. While awareness of a possible teratogenic effect at any stage of pregnancy was high (&gt;80%), most GPs (62.2%, 95% CI: 51.3, 71.9%) and community pharmacists (53.1%, 95% CI: 43.2, 62.8%) were unsure of the magnitude of risk for developmental disorders, while most specialists under-estimated this risk (46.7%, 95% CI: 24.8, 69.9%). Although &gt;70% of the respondents identified valproate to be contraindicated in any woman of childbearing potential unless the conditions of the PPP are fulfilled, experience implementing key elements in practice varied. Our findings suggest continued effort is needed to ensure optimal implementation of “prevent” into clinical practice in Ireland.