cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13960847
title: Data for the paper "Computing MHD equilibria of stellarators with a flexible coordinate frame"
title: "A generalized Frenet frame for computing MHD equilibria in stellarators"

description: Data  for the revised paper "Computing MHD equilibria of stellarators with a flexible coordinate frame"

Thetitle has changed from the submission title: "A generalized Frenet frame for computing MHD equilibria in stellarators"

We provide the input and output files for all GVEC simluations presented at the "JOINT VARENNA - LAUSANNE INTERNATIONAL WORKSHOP: THEORY OF FUSION PLASMAS, 2024" and to be published in PPCF.

An ipython script that generates the postprocessing /plots is also provided.

New content computing the frame from a boundary surface obtained from quasr is now also part of this compilation.

See the README.md file for details.
DOI: 10.5281/zenodo.13960848
title: Data for the paper "A generalized Frenet frame for computing MHD equilibria in stellarators"

description: Data  for the paper "A generalized Frenet frame for computing MHD equilibria in stellarators"

We provide the input and output files for all GVEC simluations presented at the "JOINT VARENNA - LAUSANNE INTERNATIONAL WORKSHOP: THEORY OF FUSION PLASMAS, 2024" and to be published in PPCF.

An ipython script that generates the postprocessing /plots is also provided.

See the README.md file for details.
DOI: 10.5281/zenodo.14714598
title: Data for the paper "Computing MHD equilibria of stellarators with a flexible coordinate frame"
title: "A generalized Frenet frame for computing MHD equilibria in stellarators"

description: Data  for the revised paper "Computing MHD equilibria of stellarators with a flexible coordinate frame"

Thetitle has changed from the submission title: "A generalized Frenet frame for computing MHD equilibria in stellarators"

We provide the input and output files for all GVEC simluations presented at the "JOINT VARENNA - LAUSANNE INTERNATIONAL WORKSHOP: THEORY OF FUSION PLASMAS, 2024" and to be published in PPCF.

An ipython script that generates the postprocessing /plots is also provided.

New content computing the frame from a boundary surface obtained from quasr is now also part of this compilation.

See the README.md file for details.
DOI: 10.6084/m9.figshare.27731037
title: Impact of acute PM<sub>2.5</sub> exposure on pediatric blood lead levels: evidence from Beijing, China

description: Research on the effects of fine particulate matter (PM<sub>2.5</sub>) on blood lead levels (BLL), particularly in children, remains limited. This study aimed to investigate the relationship between acute ambient PM<sub>2.5</sub> exposure and BLL in children aged below 14. A total of 23,732 children were included in the study, with BLL measured using atomic absorption spectrometry. Generalized additive models (GAM) were employed to analyze the connection between children’s BLL and acute PM<sub>2.5</sub> exposure. From April 2008 to June 2017, Beijing’s average PM<sub>2.5</sub> concentration was 91.71 ± 74.55 μg/m³, approximately 2.62 times higher than the annual average concentration recommended by the WHO Ambient Air Quality Standard (35 μg/m³). The mean (±SD) BLL of children was 0.2105 ± 0.0963 μmol/L, with a median of 0.20 μmol/L. The data indicated an increase in BLL with age and a significant difference in BLL between boys and girls (<i>p</i> &lt; 0.05). The analysis revealed a non-linear relationship between BLL and PM<sub>2.5</sub> exposure after adjusting for variables such as gender, age, blood levels of Cu, Fe, Ca, Mg, Zn, analysis batch, and heating season. PM<sub>2.5</sub> exposure significantly impacted children’s BLL.
DOI: 10.6084/m9.figshare.28282819
title: Application of new approach methodology-derived points of departure with predicted or regulatory exposures to estimate bioactivity to exposure ratios (BER) for risk assessment

description: New approach methodologies assays were examined with CompTox Chemicals Dashboard (CTCD) and Integrated Chemical Environment (ICE) databases that utilize two versions of invitrodb (v.4.1 and 3.5, respectively) to investigate: 1) how assay target values differed between the two versions; 2) how modeled endpoint predictions compared with in vivo endpoints; and 3) how they can be used in risk assessment. Chlorpyrifos (CPF), fipronil (FIP) and imidacloprid (IMID) with DNT/DART in vivo endpoints were examples in this case study. CTCD assays with AC50, and Benchmark Dose (BMD) endpoints and ICE assays with AC50 endpoints had DART/DNT targets for these pesticides. Z-Scores indicated chemical-target specificity. Activity ratios (FD) for the same assay (CTCD AC50/CTCD BMD, CTCD AC50/ICE AC50, ICE AC50/CTCD BMD) had 89%-FD &lt;5. IVIVE models (3COMP, PBTK) had AC50 and BMD inputs to predict human administered equivalent doses (AEDHuman mg/kg/day) for comparison with measured in vivo lowest observed effect levels (LOEL) mg/kg/day: CPF 3.0; FIP 0.2; IMID 30. IVIVE 3COMP model had the lowest FD for AEDHuman compared to invivo LOELs. Bioactivity to Exposure (BER) ratios were then calculated by: 3COMP AEDHuman or in vivo adjusted or scaled LOELs to regulatory or modeled predictions (SEEM or biomonitoring). BERs showed safe levels.
DOI: 10.6084/m9.figshare.28282819.v1
title: Application of new approach methodology-derived points of departure with predicted or regulatory exposures to estimate bioactivity to exposure ratios (BER) for risk assessment

description: New approach methodologies assays were examined with CompTox Chemicals Dashboard (CTCD) and Integrated Chemical Environment (ICE) databases that utilize two versions of invitrodb (v.4.1 and 3.5, respectively) to investigate: 1) how assay target values differed between the two versions; 2) how modeled endpoint predictions compared with in vivo endpoints; and 3) how they can be used in risk assessment. Chlorpyrifos (CPF), fipronil (FIP) and imidacloprid (IMID) with DNT/DART in vivo endpoints were examples in this case study. CTCD assays with AC50, and Benchmark Dose (BMD) endpoints and ICE assays with AC50 endpoints had DART/DNT targets for these pesticides. Z-Scores indicated chemical-target specificity. Activity ratios (FD) for the same assay (CTCD AC50/CTCD BMD, CTCD AC50/ICE AC50, ICE AC50/CTCD BMD) had 89%-FD &lt;5. IVIVE models (3COMP, PBTK) had AC50 and BMD inputs to predict human administered equivalent doses (AEDHuman mg/kg/day) for comparison with measured in vivo lowest observed effect levels (LOEL) mg/kg/day: CPF 3.0; FIP 0.2; IMID 30. IVIVE 3COMP model had the lowest FD for AEDHuman compared to invivo LOELs. Bioactivity to Exposure (BER) ratios were then calculated by: 3COMP AEDHuman or in vivo adjusted or scaled LOELs to regulatory or modeled predictions (SEEM or biomonitoring). BERs showed safe levels.
DOI: 10.6084/m9.figshare.27731037.v1
title: Impact of acute PM<sub>2.5</sub> exposure on pediatric blood lead levels: evidence from Beijing, China

description: Research on the effects of fine particulate matter (PM<sub>2.5</sub>) on blood lead levels (BLL), particularly in children, remains limited. This study aimed to investigate the relationship between acute ambient PM<sub>2.5</sub> exposure and BLL in children aged below 14. A total of 23,732 children were included in the study, with BLL measured using atomic absorption spectrometry. Generalized additive models (GAM) were employed to analyze the connection between children’s BLL and acute PM<sub>2.5</sub> exposure. From April 2008 to June 2017, Beijing’s average PM<sub>2.5</sub> concentration was 91.71 ± 74.55 μg/m³, approximately 2.62 times higher than the annual average concentration recommended by the WHO Ambient Air Quality Standard (35 μg/m³). The mean (±SD) BLL of children was 0.2105 ± 0.0963 μmol/L, with a median of 0.20 μmol/L. The data indicated an increase in BLL with age and a significant difference in BLL between boys and girls (<i>p</i> &lt; 0.05). The analysis revealed a non-linear relationship between BLL and PM<sub>2.5</sub> exposure after adjusting for variables such as gender, age, blood levels of Cu, Fe, Ca, Mg, Zn, analysis batch, and heating season. PM<sub>2.5</sub> exposure significantly impacted children’s BLL.
DOI: 10.15468/dl.g95enq
title: Occurrence Download

description: A dataset containing 1502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Daucus carota subsp. sativus (Hoffm.) Arcang."
 ]
}

 The dataset includes 1502 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004282-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y5dne5
title: Occurrence Download

description: A dataset containing 15362 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Line transect censuses of breeding birds",
 "Country is Sweden"
 ]
}

 The dataset includes 15362 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004281-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7rhbvv
title: Occurrence Download

description: A dataset containing 14499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Bryophyte herbarium TRH, NTNU University Museum",
 "Country is Sweden"
 ]
}

 The dataset includes 14499 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004279-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mg9unn
title: Occurrence Download

description: A dataset containing 16915 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is KTP Ring Data",
 "Country is Sweden"
 ]
}

 The dataset includes 16915 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004280-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14886269
title: Raw Data_Factors Influencing E-learning Continuance Intention Among EFL Students

description: The dataset, "Raw Data_Factors Influencing E-learning Continuance Intention Among EFL Students," was collected from 567 university students at Guizhou University of Finance and Economics, China, using the Wenjuanxing platform (www.wjx.cn) between August and October 2024.   The survey focused on examining the relationship between five key factors—perceived usefulness (PU), perceived ease of use (PEOU), confirmation (CON), perceived enjoyment (PE), and satisfaction (SAT)—and their influence on students' continuance intention (CI) to engage with e-learning.   After cleaning the data for invalid responses, the dataset includes valid responses from 435 participants.   The study applied structural equation modeling (SEM) to assess how these factors, along with the mediating role of SAT, contribute to e-learning CI among English as a Foreign Language (EFL) students.   This dataset offers valuable insights into the dynamics of e-learning in the context of foreign language education, and can be used for further research into improving student engagement and satisfaction in online learning environments.
DOI: 10.5281/zenodo.14886270
title: Raw Data_Factors Influencing E-learning Continuance Intention Among EFL Students

description: The dataset, "Raw Data_Factors Influencing E-learning Continuance Intention Among EFL Students," was collected from 567 university students at Guizhou University of Finance and Economics, China, using the Wenjuanxing platform (www.wjx.cn) between August and October 2024.   The survey focused on examining the relationship between five key factors—perceived usefulness (PU), perceived ease of use (PEOU), confirmation (CON), perceived enjoyment (PE), and satisfaction (SAT)—and their influence on students' continuance intention (CI) to engage with e-learning.   After cleaning the data for invalid responses, the dataset includes valid responses from 435 participants.   The study applied structural equation modeling (SEM) to assess how these factors, along with the mediating role of SAT, contribute to e-learning CI among English as a Foreign Language (EFL) students.   This dataset offers valuable insights into the dynamics of e-learning in the context of foreign language education, and can be used for further research into improving student engagement and satisfaction in online learning environments.
DOI: 10.5281/zenodo.13589862
title: DATA: Diversity of extracellular vesicles derived from calli, cell culture and apoplastic fluid of tobacco

description: The data includes .jpg files with fluorescence readings and .csv files with results of concentration and size measurements.
description: Particles within the samples were analyzed using Malvern Instruments' NanoSight NS 3000, and videos were recorded and processed using the NTA software. Roughly 300 – 400 μl of each sample was introduced into the flow-cell top-plate chamber. A laser beam with a wavelength (λ) of 562 nm illuminated the chamber from below, causing the particles in the solution to scatter light. Each sample underwent three separate analyses, each lasting 30 seconds, while the ambient temperature remained below 25°C. The results were evaluated with the assistance of the Malvern software.

For detection of the presence of labeled siRNA in plant vesicles after loading, we used a fluorescence microplate reader (GloMax Discover Microlate Reader). The volume of 50 µl of each sample of pEVs washed out of free siRNA were transferred into microplate and the fluorescence intensity was measure (excitation = 627 nm, emission = 660 - 720 nm). Using the same procedure, the calibration curve of siRNA was prepared to allow the calculation of the concentration of pEVs-loaded siRNA.
description: The authors acknowledge the Czech Science Foundation project No. 20-21421S; NanoEnviCz, project No. LM2023066, supported by the Ministry of Education, Youth and Sports of the Czech Republic and by Student grant agency (SGS) of Faculty of Science Jan Evangelista Purkyne University in Usti nad Labem (2021-53-001-3). The work was also supported from European Regional Development Fund – Project Excellence in Regenerative Medicine" (No. CZ.02.01.01/00/22_008/0004562).
DOI: 10.5281/zenodo.13589863
title: DATA: Diversity of extracellular vesicles derived from calli, cell culture and apoplastic fluid of tobacco

description: The data includes .jpg files with fluorescence readings and .csv files with results of concentration and size measurements.
description: Particles within the samples were analyzed using Malvern Instruments' NanoSight NS 3000, and videos were recorded and processed using the NTA software. Roughly 300 – 400 μl of each sample was introduced into the flow-cell top-plate chamber. A laser beam with a wavelength (λ) of 562 nm illuminated the chamber from below, causing the particles in the solution to scatter light. Each sample underwent three separate analyses, each lasting 30 seconds, while the ambient temperature remained below 25°C. The results were evaluated with the assistance of the Malvern software.

For detection of the presence of labeled siRNA in plant vesicles after loading, we used a fluorescence microplate reader (GloMax Discover Microlate Reader). The volume of 50 µl of each sample of pEVs washed out of free siRNA were transferred into microplate and the fluorescence intensity was measure (excitation = 627 nm, emission = 660 - 720 nm). Using the same procedure, the calibration curve of siRNA was prepared to allow the calculation of the concentration of pEVs-loaded siRNA.
description: The authors acknowledge the Czech Science Foundation project No. 20-21421S; NanoEnviCz, project No. LM2023066, supported by the Ministry of Education, Youth and Sports of the Czech Republic and by Student grant agency (SGS) of Faculty of Science Jan Evangelista Purkyne University in Usti nad Labem (2021-53-001-3). The work was also supported from European Regional Development Fund – Project Excellence in Regenerative Medicine" (No. CZ.02.01.01/00/22_008/0004562).
DOI: 10.6084/m9.figshare.27230868
title: Sustainable pest management using plant secondary metabolites regulated azadirachtin nano-assemblies

description: Biopesticides have emerged as a global trend to minimize the risks associated with synthetic agrochemicals. However, their stability and efficacies remain challenges for widespread application. Herein, co-assembled nanoparticles (AT NPs or AP NPs) based on azadirachtin (AZA) and tannic acid (TA) or phenylalanine (PA) are constructed in aqueous solution through self-assembly technology. The small particle size, low PDI, high ζ-potential, and related other physicochemical characteristics of nanoparticles can improve wettability, adhesiveness, rain erosion resistance, and photostability compared to the commercial AZA formulation. Importantly, co-assemblies with bidirectional pH-responsive disassembly in acidic or alkaline solutions, allow them to respond to microenvironmental stimuli of targets and enable controlled release of AZA. The nanosystems demonstrated remarkable in vitro and in vivo insecticidal activities against Ostrinia furnacalis and Aphis gossypii. This study illustrates a distinctive perspective for developing eco-friendly nanosystems, highlighting a water-based treatment method for biopesticides with improved physicochemical properties and utilization efficiency.
DOI: 10.6084/m9.figshare.27230868.v1
title: Sustainable pest management using plant secondary metabolites regulated azadirachtin nano-assemblies

description: Biopesticides have emerged as a global trend to minimize the risks associated with synthetic agrochemicals. However, their stability and efficacies remain challenges for widespread application. Herein, co-assembled nanoparticles (AT NPs or AP NPs) based on azadirachtin (AZA) and tannic acid (TA) or phenylalanine (PA) are constructed in aqueous solution through self-assembly technology. The small particle size, low PDI, high ζ-potential, and related other physicochemical characteristics of nanoparticles can improve wettability, adhesiveness, rain erosion resistance, and photostability compared to the commercial AZA formulation. Importantly, co-assemblies with bidirectional pH-responsive disassembly in acidic or alkaline solutions, allow them to respond to microenvironmental stimuli of targets and enable controlled release of AZA. The nanosystems demonstrated remarkable in vitro and in vivo insecticidal activities against Ostrinia furnacalis and Aphis gossypii. This study illustrates a distinctive perspective for developing eco-friendly nanosystems, highlighting a water-based treatment method for biopesticides with improved physicochemical properties and utilization efficiency.
DOI: 10.15468/dl.4wm9n9
title: Occurrence Download

description: A dataset containing 13397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Sea water sample Targeted Locus (Loci)",
 "Country is Sweden"
 ]
}

 The dataset includes 13397 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004283-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ksg8nr
title: Occurrence Download

description: A dataset containing 15809 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is USDA United States National Fungus Collections",
 "Country is Sweden"
 ]
}

 The dataset includes 15809 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004284-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28071875
title: Deposition lifetimes of atmospheric reactive organic compounds for chemically explicit modeling

description: Estimated deposition lifetimes of compounds in the Master Chemical Mechanism v.3.3.1 and alpha-pinene oxidation products described by Pye HOT et al., Proc Natl Acad Sci U S A 2019, 116(14): 6641-6646. Assumed under conditions with leaf area index of 4.7 and 0.47
DOI: 10.6084/m9.figshare.28071875.v1
title: Deposition lifetimes of atmospheric reactive organic compounds for chemically explicit modeling

description: Estimated deposition lifetimes of compounds in the Master Chemical Mechanism v.3.3.1 and alpha-pinene oxidation products described by Pye HOT et al., Proc Natl Acad Sci U S A 2019, 116(14): 6641-6646. Assumed under conditions with leaf area index of 4.7 and 0.47
DOI: 10.6084/m9.figshare.25524796
title: Time-resolved X-ray solution scattering unveils the events leading to hemoglobin heme capture by staphylococcal IsdB

description: "SAXS_*": SAXS datasets and corresponding fittings
"SAXS_WAXS_*": SAXS-WAXS merged datasets
"TRWAXS_*": absolute and difference time resolved scattering datasets
"TROA_IsdB_metHb": time resolved optical absorption dataset
"TRF_IsdB_metHb": time resolved fluorescence dataset
"TRWAXS_IsdB_metHb_linear_deconvolution": results from linear deconvolution of TRWAXS absolute dataset.
DOI: 10.6084/m9.figshare.25524796.v1
title: Time-resolved X-ray solution scattering unveils the events leading to hemoglobin heme capture by staphylococcal IsdB

description: "SAXS_*": SAXS datasets and corresponding fittings
"SAXS_WAXS_*": SAXS-WAXS merged datasets
"TRWAXS_*": absolute and difference time resolved scattering datasets
"TROA_IsdB_metHb": time resolved optical absorption dataset
"TRF_IsdB_metHb": time resolved fluorescence dataset
"TRWAXS_IsdB_metHb_linear_deconvolution": results from linear deconvolution of TRWAXS absolute dataset.
DOI: 10.15468/dl.qybnn4
title: Occurrence Download

description: A dataset containing 472 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Alexandrium affine (H.Inoue & Y.Fukuyo) Balech, 1995"
 ]
}

 The dataset includes 472 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004285-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z273qp
title: Occurrence Download

description: A dataset containing 4888 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Brassica oleracea var. capitata L."
 ]
}

 The dataset includes 4888 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004289-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkztnb
title: Occurrence Download

description: A dataset containing 12094 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Amino acid addition experiment Metagenome",
 "Country is Sweden"
 ]
}

 The dataset includes 12094 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004286-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nkktfk
title: Occurrence Download

description: A dataset containing 10361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EURISCO, The European Genetic Resources Search Catalogue",
 "Country is Sweden"
 ]
}

 The dataset includes 10361 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004288-250214102907787/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.