cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12398990
title: Additional file 2 of How are missing data in covariates handled in observational time-to-event studies in oncology? A systematic review

description: Additional file 2 This contains the data extraction spreadsheet, stored as a.xls file.
DOI: 10.6084/m9.figshare.12398990.v1
title: Additional file 2 of How are missing data in covariates handled in observational time-to-event studies in oncology? A systematic review

description: Additional file 2 This contains the data extraction spreadsheet, stored as a.xls file.
DOI: 10.6084/m9.figshare.12398975
title: Additional file 1 of Targeted mass spectrometry to quantify brain-derived cerebrospinal fluid biomarkers in Alzheimer’s disease

description: Additional file 1: Table S1. Summary of replication cohort characteristics. Table S2. Clinical and immunoassay metadata for all 88 cases. Table S3. Raw PRM quantified peptide peak area before normalization. Table S4. Normalized peptide peak areas. Table S5. Normalized Protein Quantification. Table S6. Normalized Protein Quantification (Regressed for age and sex). Table S7. Differential Expression Analysis (ANOVA). Table S8. Correlation of all proteins quantified in the TMT discovery cohort with ELISA-measured t-tau, pTau, Aβ, and Aβ/Tau ratio. Table S9. ROC analysis.
DOI: 10.6084/m9.figshare.12398969
title: Additional file 3 of Inter-annual variability of the effects of intrinsic and extrinsic drivers affecting West Nile virus vector Culex pipiens population dynamics in northeastern Italy

description: Additional file 3: Table S4. Coefficients estimates (Est.), 95% confidence intervals (CI), significance and importance (Imp.) of the overall period (2010–2018) and single-year models with averaged parameters.
DOI: 10.6084/m9.figshare.12398975.v1
title: Additional file 1 of Targeted mass spectrometry to quantify brain-derived cerebrospinal fluid biomarkers in Alzheimer’s disease

description: Additional file 1: Table S1. Summary of replication cohort characteristics. Table S2. Clinical and immunoassay metadata for all 88 cases. Table S3. Raw PRM quantified peptide peak area before normalization. Table S4. Normalized peptide peak areas. Table S5. Normalized Protein Quantification. Table S6. Normalized Protein Quantification (Regressed for age and sex). Table S7. Differential Expression Analysis (ANOVA). Table S8. Correlation of all proteins quantified in the TMT discovery cohort with ELISA-measured t-tau, pTau, Aβ, and Aβ/Tau ratio. Table S9. ROC analysis.
DOI: 10.6084/m9.figshare.12398969.v1
title: Additional file 3 of Inter-annual variability of the effects of intrinsic and extrinsic drivers affecting West Nile virus vector Culex pipiens population dynamics in northeastern Italy

description: Additional file 3: Table S4. Coefficients estimates (Est.), 95% confidence intervals (CI), significance and importance (Imp.) of the overall period (2010–2018) and single-year models with averaged parameters.
DOI: 10.6084/m9.figshare.12398954
title: Additional file 1 of Association of simple renal cysts and chronic kidney disease with large abdominal aortic aneurysm

description: Additional file 1. Dataset containing all information on every patient included in the study (Excel format).
DOI: 10.6084/m9.figshare.12398954.v1
title: Additional file 1 of Association of simple renal cysts and chronic kidney disease with large abdominal aortic aneurysm

description: Additional file 1. Dataset containing all information on every patient included in the study (Excel format).
DOI: 10.6084/m9.figshare.12398918
title: Additional file 7 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 7: Table S6. The fragments per kilobase of transcript per million fragments mapped (FPKM) values [37] of CsHsf genes under heat stress conditions in tea plants (C. sinensis cv. ‘Longjing-changyecha’) leaves pre-treated with exogenous calcium.
DOI: 10.6084/m9.figshare.12398924
title: Additional file 8 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 8: Table S7. Expression of eight CsHsf genes under heat stress conditions in tea plant (C. sinensis cv. ‘Longjing-changye’) leaves pre-treated with exogenous calcium. Bars indicate the standard deviation (SD) of the mean (n = 3). Each biological replicate contains three technical replicates.
DOI: 10.6084/m9.figshare.12398912
title: Additional file 6 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 6: Table S5. Transcription levels of CsHsf genes exposed to heat and ABA treatments. Tea plant cultivar ‘Echa 10’ was used in the experiment and qRT-PCR data are presented as the mean ± SD of three biological and technical replicates.
DOI: 10.6084/m9.figshare.12398924.v1
title: Additional file 8 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 8: Table S7. Expression of eight CsHsf genes under heat stress conditions in tea plant (C. sinensis cv. ‘Longjing-changye’) leaves pre-treated with exogenous calcium. Bars indicate the standard deviation (SD) of the mean (n = 3). Each biological replicate contains three technical replicates.
DOI: 10.6084/m9.figshare.12398906
title: Additional file 5 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 5: Table S4. The transcript per million (TPM) values [47] of CsHsf genes exposed to drought (25% polyethylene glycol 6000) and salt (200 mM NaCl) treatments in C. sinensis cv. ‘Tieguanyin’.
DOI: 10.6084/m9.figshare.12398912.v1
title: Additional file 6 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 6: Table S5. Transcription levels of CsHsf genes exposed to heat and ABA treatments. Tea plant cultivar ‘Echa 10’ was used in the experiment and qRT-PCR data are presented as the mean ± SD of three biological and technical replicates.
DOI: 10.6084/m9.figshare.12398900
title: Additional file 4 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 4: Table S3. The transcript per million (TPM) values [47] of CsHsf genes in C. sinensis cv. ‘Shuchazao’ different tissues.
DOI: 10.6084/m9.figshare.12398918.v1
title: Additional file 7 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 7: Table S6. The fragments per kilobase of transcript per million fragments mapped (FPKM) values [37] of CsHsf genes under heat stress conditions in tea plants (C. sinensis cv. ‘Longjing-changyecha’) leaves pre-treated with exogenous calcium.
DOI: 10.6084/m9.figshare.12398906.v1
title: Additional file 5 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 5: Table S4. The transcript per million (TPM) values [47] of CsHsf genes exposed to drought (25% polyethylene glycol 6000) and salt (200 mM NaCl) treatments in C. sinensis cv. ‘Tieguanyin’.
DOI: 10.6084/m9.figshare.12398888
title: Additional file 2 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 2: Table S1. Promoter sequences (2000 bp upstream of the translation start site) of CsHsf genes.
DOI: 10.6084/m9.figshare.12398900.v1
title: Additional file 4 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 4: Table S3. The transcript per million (TPM) values [47] of CsHsf genes in C. sinensis cv. ‘Shuchazao’ different tissues.
DOI: 10.6084/m9.figshare.12398879
title: Additional file 10 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 10: Table S8. Primers used for qRT-PCR of CsHsf genes. These primers were specific for C. sinensis cv. ‘Echa 10’.
DOI: 10.6084/m9.figshare.12398888.v1
title: Additional file 2 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 2: Table S1. Promoter sequences (2000 bp upstream of the translation start site) of CsHsf genes.
DOI: 10.6084/m9.figshare.12398870
title: Additional file 9 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 9. Venom gene annotations. Annotation details of venom genes in L. fabarum and A. ervi.
DOI: 10.6084/m9.figshare.12398876
title: Additional file 1 of Use of static and dynamic [18F]-F-DOPA PET parameters for detecting patients with glioma recurrence or progression

description: Additional file 1. Supplemental Table.
DOI: 10.6084/m9.figshare.12398870.v1
title: Additional file 9 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 9. Venom gene annotations. Annotation details of venom genes in L. fabarum and A. ervi.
DOI: 10.6084/m9.figshare.12398876.v1
title: Additional file 1 of Use of static and dynamic [18F]-F-DOPA PET parameters for detecting patients with glioma recurrence or progression

description: Additional file 1. Supplemental Table.
DOI: 10.6084/m9.figshare.12398879.v1
title: Additional file 10 of Genome-wide characterization of tea plant (Camellia sinensis) Hsf transcription factor family and role of CsHsfA2 in heat tolerance

description: Additional file 10: Table S8. Primers used for qRT-PCR of CsHsf genes. These primers were specific for C. sinensis cv. ‘Echa 10’.
DOI: 10.6084/m9.figshare.12398867
title: Additional file 8 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 8. Ortholog MAtrix (OMA) results. Summary of all Hierarchical Ortholog Groups (HOGs) predicted by OMA, including details of LRR genes.
DOI: 10.6084/m9.figshare.12398858
title: Additional file 6 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 6. Details of CDS used to compare GC content across taxa. Genbank numbers and taxonomic information for genome (CDS) graphed in Supplementary Figure 9, detailing the GC content in predicted genes of other arthropods.
DOI: 10.6084/m9.figshare.12398861
title: Additional file 7 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 7. Analysis of GC content and expression. Full details of analyses that drew from expression data in both taxa. This file details (a) GC content, carbon, and nitrogen for all predicted genes, (b) the most highly expressed genes in both taxa and (c) full analysis of differential expression between adult and larval L. fabarum, and corresponding comparison of GC content.
DOI: 10.6084/m9.figshare.12398858.v1
title: Additional file 6 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 6. Details of CDS used to compare GC content across taxa. Genbank numbers and taxonomic information for genome (CDS) graphed in Supplementary Figure 9, detailing the GC content in predicted genes of other arthropods.
DOI: 10.6084/m9.figshare.12398861.v1
title: Additional file 7 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 7. Analysis of GC content and expression. Full details of analyses that drew from expression data in both taxa. This file details (a) GC content, carbon, and nitrogen for all predicted genes, (b) the most highly expressed genes in both taxa and (c) full analysis of differential expression between adult and larval L. fabarum, and corresponding comparison of GC content.
DOI: 10.6084/m9.figshare.12398867.v1
title: Additional file 8 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 8. Ortholog MAtrix (OMA) results. Summary of all Hierarchical Ortholog Groups (HOGs) predicted by OMA, including details of LRR genes.
DOI: 10.6084/m9.figshare.12398846
title: Additional file 4 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 4. Orphan genes in A. ervi. Fasta file containing the 2568 orphan genes identified in the A. ervi assembly.
DOI: 10.6084/m9.figshare.12398849
title: Additional file 5 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 5. Orphan genes in L. fabarum. Fasta file containing the 968 orphan genes identified in the L. fabarum assembly.
DOI: 10.6084/m9.figshare.12398840
title: Additional file 3 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 3. Linkage groups in L. fabarum. Details of scaffold positions used to construct linkage groups for L. fabarum.
DOI: 10.6084/m9.figshare.12398846.v1
title: Additional file 4 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 4. Orphan genes in A. ervi. Fasta file containing the 2568 orphan genes identified in the A. ervi assembly.
DOI: 10.6084/m9.figshare.12398849.v1
title: Additional file 5 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 5. Orphan genes in L. fabarum. Fasta file containing the 968 orphan genes identified in the L. fabarum assembly.
DOI: 10.6084/m9.figshare.12398831
title: Additional file 2 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 2. Contamination filtering for L. fabarum. Details of both blast-based and blobtools contamination filtering performed on the L. fabarum genome.
DOI: 10.6084/m9.figshare.12398831.v1
title: Additional file 2 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 2. Contamination filtering for L. fabarum. Details of both blast-based and blobtools contamination filtering performed on the L. fabarum genome.
DOI: 10.6084/m9.figshare.12398840.v1
title: Additional file 3 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 3. Linkage groups in L. fabarum. Details of scaffold positions used to construct linkage groups for L. fabarum.
DOI: 10.6084/m9.figshare.12398822
title: Additional file 1 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 1. Contamination filtering for A. ervi. Details of both blast-based and blobtools contamination filtering performed on the A. ervi genome.
DOI: 10.6084/m9.figshare.12398825
title: Additional file 3 of Clozapine generates obsessive compulsive disorder-like behavior in mice

description: Additional file 3. Sapap3-/- mice.
DOI: 10.6084/m9.figshare.12398813
title: Additional file 13 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 13. Annotation of sex determination genes. Details of sex determination gene annotations.
DOI: 10.6084/m9.figshare.12398822.v1
title: Additional file 1 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 1. Contamination filtering for A. ervi. Details of both blast-based and blobtools contamination filtering performed on the A. ervi genome.
DOI: 10.6084/m9.figshare.12398825.v1
title: Additional file 3 of Clozapine generates obsessive compulsive disorder-like behavior in mice

description: Additional file 3. Sapap3-/- mice.
DOI: 10.6084/m9.figshare.12398813.v1
title: Additional file 13 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 13. Annotation of sex determination genes. Details of sex determination gene annotations.
DOI: 10.6084/m9.figshare.12398804
title: Additional file 12 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 12. OXPHOS gene annotations. Details of annotated OXPHOS genes, including duplications in the assembly.
DOI: 10.6084/m9.figshare.12398801
title: Additional file 11 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 11. Expression of Osiris genes. Expression details of Osiris genes in L. fabarum and A. ervi, including comparison of expression between larval and adult L. fabarum.
DOI: 10.6084/m9.figshare.12398792
title: Additional file 10 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 10. Immune gene annotations. Details of immune gene annotation in L. fabarum and A. ervi.
DOI: 10.6084/m9.figshare.12398804.v1
title: Additional file 12 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 12. OXPHOS gene annotations. Details of annotated OXPHOS genes, including duplications in the assembly.
DOI: 10.6084/m9.figshare.12398792.v1
title: Additional file 10 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 10. Immune gene annotations. Details of immune gene annotation in L. fabarum and A. ervi.
DOI: 10.6084/m9.figshare.12398801.v1
title: Additional file 11 of Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

description: Additional file 11. Expression of Osiris genes. Expression details of Osiris genes in L. fabarum and A. ervi, including comparison of expression between larval and adult L. fabarum.
DOI: 10.6084/m9.figshare.12398768
title: Additional file 2 of Catalog of small repeating earthquakes for the Japanese Islands

description: Additional file 2. Table of small repeating earthquakes. Group ID, Date, Latitude, Longitude, Depth, and Magnitude are provided for each earthquake here.
DOI: 10.6084/m9.figshare.12398765
title: Additional file 1 of Catalog of small repeating earthquakes for the Japanese Islands

description: Additional file 1. Table of similar earthquakes. Group ID, Date, Latitude, Longitude, Depth, Magnitude and the Cross-correlation coefficient are provided for each earthquake here.
DOI: 10.6084/m9.figshare.12398765.v1
title: Additional file 1 of Catalog of small repeating earthquakes for the Japanese Islands

description: Additional file 1. Table of similar earthquakes. Group ID, Date, Latitude, Longitude, Depth, Magnitude and the Cross-correlation coefficient are provided for each earthquake here.
DOI: 10.6084/m9.figshare.12398768.v1
title: Additional file 2 of Catalog of small repeating earthquakes for the Japanese Islands

description: Additional file 2. Table of small repeating earthquakes. Group ID, Date, Latitude, Longitude, Depth, and Magnitude are provided for each earthquake here.
DOI: 10.6084/m9.figshare.12398705
title: Galaxy-History-selene-case1

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398717
title: Galaxy-History-selene-case1-2

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398717.v1
title: Galaxy-History-selene-case1-2

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398699
title: Galaxy-History-selene-case2

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398705.v1
title: Galaxy-History-selene-case1

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398573
title: Zircon U-Pb ages and Hf isotopes, and whole-rock geochemical compositions

description: Zircon U-Pb ages and Hf isotopes, and whole-rock geochemical compositions for Beishan complex
DOI: 10.6084/m9.figshare.12398699.v1
title: Galaxy-History-selene-case2.tar.gz

description: A Galaxy machine learning history.
DOI: 10.6084/m9.figshare.12398309
title: Search query lists

description: Lists of search queries used in the analysis of the paper<br>
DOI: 10.6084/m9.figshare.12397958
title: Sonar data from Gadeken et al. 2020

description: Integrated dataset of NOAA Northwest Fisheries Science Center sonar collections in the California Current System in 2011-3 and 2015, and satellite observations of sea surface temperature, chlorophyll a, and reflectance from MODIS Terra and Aqua sensors. <br>
DOI: 10.6084/m9.figshare.12398309.v1
title: Search query lists

description: Lists of search queries used in the analysis of the paper<br>
DOI: 10.6084/m9.figshare.12397958.v1
title: Sonar data from Gadeken et al. 2020

description: Integrated dataset of NOAA Northwest Fisheries Science Center sonar collections in the California Current System in 2011-3 and 2015, and satellite observations of sea surface temperature, chlorophyll a, and reflectance from MODIS Terra and Aqua sensors. <br>