cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.hf0rm/14
title: NASTRAN file of upland moa (Megalapteryx didinus) skull

description: This zip file contains NASTRAN files (.nas) of the final cranium and mandible volume mesh used to create the finite element model of the upland moa (Megalapteryx didinus) specimen NMNZ S28206 analysed in the paper.
DOI: 10.5061/dryad.hh205/1
title: Garrigue-et-al_DATA
DOI: 10.5061/dryad.j4389/1
title: Butterfly locations

description: Coordinates of the four taxa in WGS84 projection
DOI: 10.5061/dryad.mr861/1
title: Ion flux results

description: Net fluxes of H+, NH4+ and NO3- measured on ectomycorrhizal root tips using a microelectrode ion flux measurement system (MIFE).  Roots were retrieved from three sites of contrasting soil fertility, both in the spring and fall of 2014.  Non-mycorrhizal roots taken from axenically raised seedlings.
DOI: 10.5061/dryad.mr861/2
title: community similarity and distance measures

description: Pair-wise comparisons of test sites for community similarity (Sorensen Bray-Curtis) with distance measures of mineralizable nitrogen and physical distance (km)
DOI: 10.5061/dryad.p1208/1
title: Flower-visitors, olfactometer, timing of herbivory

description: Raw data on the effect of herbivory on flower-visitor interactions and plant reproduction; Raw data on the foraging behavior of flower visitors towards flower scent of control and herbivore-induced plants in olfactometer trials; Raw data on the effect of timing of herbivory on the development of Sinapis arvensis
DOI: 10.5061/dryad.ph81m/1
title: Fig 1CD 7A S4 Raw data mouse elfenbein et al

description: Raw data from figure 1C, 1D, 7A, and S4.
DOI: 10.5061/dryad.ph81m/2
title: Figure 5 raw data elfenbein etal

description: Raw data for Figure 5
DOI: 10.5061/dryad.ph81m/3
title: Figure 6 raw data elfenbein etal

description: Raw data for Figure 6
DOI: 10.5061/dryad.ph81m/4
title: Figure S1 raw data hela elfenbein et al

description: Raw data for figure S1
DOI: 10.5061/dryad.ph81m/5
title: Figure S3 Raw data motility elfenbein et al

description: Raw data for Figure S3
DOI: 10.5061/dryad.r4g6p/1
title: Full data

description: Data for learning assays (Experiment 1 and 2), reproductive, lifespan and locomotory activity assays.
DOI: 10.5061/dryad.r620q/1
title: Gdh Life Span Raw Data
DOI: 10.5061/dryad.r620q/2
title: GPDH Life Span Raw Data
DOI: 10.5061/dryad.r620q/3
title: HexA Life Span Raw Data
DOI: 10.5061/dryad.r620q/4
title: HexC Life Span Raw Data
DOI: 10.5061/dryad.r620q/5
title: Idh Life Span Raw Data
DOI: 10.5061/dryad.r620q/6
title: MDH2 Life Span Raw Data
DOI: 10.5061/dryad.r620q/7
title: Men Life Span Raw Data
DOI: 10.5061/dryad.s18gk/1
title: Data Steps and Code

description: Description of steps and code used to identify the most frequently burned fire dependent vegetation (see Step 2 in methods) and the indices used to calculate the priority areas for prescribed fire use (see Steps 4 - 7 in methods).
DOI: 10.5061/dryad.s18gk/4
title: Historic Prairie Savanna Vegetation

description: Shapefile used to determine historic extent of prairie and savanna vegetation types in Wisconsin. Used in Step 2 of methods to include pasture and managed grasslands that had potential to include remnant prairie patches.
DOI: 10.5061/dryad.s18gk/5
title: Frequently Burned Vegetation

description: This shapefile is the result of Step 2 and Step 3 in the methods, where we have identified the most frequently burned fire dependent vegetation for the purpose of this study. Key fields: Community group (Group), Mean fire return interval (FireRetInt), and Community Rarity (RarityRank)
DOI: 10.5061/dryad.t1tk4/1
title: Stress measurements in F.distichus

description: The file contains two tables with (1) photosynthetic performance (PI_abs and Fv/Fm) and (2) gene expression (3 hsp genes) of F. distichus individuals from two populations (Svalbard and Kirkenes) during thermal stress experiments. Experiments were performed at 20˚C, 24˚C and 28˚C with measurements taken at 0 min (control), 15 min of stress, 60 min of stress and 24 hours of recovery.
DOI: 10.5061/dryad.125p4/1
title: rosids-cpmtnuc

description: Sequence alignment of 73 plastid genes, nine mitochondrial genes, and three nuclear repeat regions for 42 rosid taxa plus 3 outgroups
DOI: 10.5061/dryad.125p4/2
title: rosids-matK

description: Sequence alignment of the plastid matK gene for 42 rosid taxa plus 3 outgroups
DOI: 10.5061/dryad.125p4/3
title: rosids-rbcL

description: Sequence alignment of the plastid rbcL gene for 42 rosid taxa plus 3 outgroups
DOI: 10.5061/dryad.125p4/4
title: rosids-matKrbcL

description: Sequence alignment of concatenated plastid matK and rbcL genes for 42 rosid taxa plus 3 outgroups
DOI: 10.5061/dryad.1d63s/1
title: raw data_chemistry

description: This table gives an overview of the cuticular hydrocarbons identified and quantified in the surface extracts of specimen of Chrysis mediata, C. viridula, Odynerus spinipes, O. reniformis, and Pseudospinolia neglecta. The substances are identified by name and retention index.
DOI: 10.5061/dryad.1d63s/2
title: biometric_distance_data_O.spinipes

description: This table shows the biometry measurements of Odynerus spinipes.
DOI: 10.5061/dryad.1d63s/3
title: biometric_landmark_data_O.spinipes_and_PC_scores

description: This table shows the landmark measurements of Odynerus spinipes forewings and their PC scores.
DOI: 10.5061/dryad.2d80m/1
title: total_read_counts

description: Number of reads mapped to a given location in the genome for a given individual. Sites included in this dataset represent the set of filtered sites we analyzed to produce our main results.
DOI: 10.5061/dryad.2d80m/2
title: methylated_read_counts

description: Number of methylated reads mapped to a given location in the genome for a given individual. Sites included in this dataset represent the set of filtered sites we analyzed to produce our main results.
DOI: 10.5061/dryad.2d80m/3
title: Lea_et_al_MACAU_output

description: The beta (effect size), standard error, p-value, and FDR corrected value for each CpG site tested in our dataset. These are the results from a model, run in the program MACAU, testing for effects of resource base on DNA methylation levels while controlling for genetic relatedness, sex, age of the blood sample, age of the individual, and bisulfite conversion rate.
DOI: 10.5061/dryad.2d80m/4
title: counts_tables_columns

description: A file noting which individual appears in which column of the methylated and total read counts tables. The individual identifiers in this file are consistent with the identifiers in Table S2.
DOI: 10.5061/dryad.2d80m/5
title: cell_type_counts

description: Counts of Basophils, Eosinophils, Neutrophils, Lymphocytes, and Monocytes obtained from blood smears. Whether an individual was a member of the Lodge group is noted (where Y=yes, the individual was a member of this group; and N=no, the individual was a member of a wild-feeding group).
DOI: 10.5061/dryad.4260b/1
title: Mueller et al. Commonness and rarity of alien and native plant species data file

description: The file contains the full data set of:Commonness and rarity of alien and native plant species - The roles of intraspecific competition and plant-soil feedback, Müller, Gregor, van Kleunen, Mark, Dawson, Wayne The columns:ID: simple row number columnGH: greenhouse (A,B,C)Table: Table number within a greenhousePhase 1: Target species planted in phase 1Phase1 code: Code used for pots in the greenhousewt_communityPh1: Total weight of the community plants in phase 1wt_target_perC_Ph1: Per captia weight of the target plants in phase 1wt_totalPh1: Total biomass per pot in phase 1initial_phase1_density: Initial planting densities of target plants in phase 1initial_phleum ph1: initial planting density of Phleum plants in phase 1Phase 2: Target species planted in phase 2Phase 2 code: Code for the respective potinitial_dens_ph2: Initial planting density of target plants in phase2Initial_phleum_ph2: Initial planting density of Phleum plants in phase 2GH4: Indicator wether pots were shifted in a fourth greenhouse at the endX: x coordinate of pot on a greenhouse tableY: y coordinate of a pot on a greenhouse tableStatus: status of species (native, alien) in GermanyFamily: family of each speciesCommonness: number of grid cells in the floraweb database that a species occurs inwt_target_ph2: weight of the target species in phase 2Nbr_Targets_ph_2: Number of targets in phase 2phase1_density: Planting densities of targets in phase 1wt_galium_ph2: weight of Galium plants in phase 2Nbr_Galium_ph_2: Number of Galium plants in phase 2wt_phleum_ph2: weight of Phelum plants in phase 2Nbr__Phleum-Ph_2: Number of Phleum plants in phase 2wt_ranunculus_ph2: weight of Ranunculus plants in phase 2Nbr_Ranunculus_ph2: Number of Ranunculus plants in phase 2wt_total_restcommunity_ph2: weight of the restcommunity (Phleum +Galium+Ranunculus)Nbr_plants_totalpot: total number of plants per pot (target+community)perC_wt_targetph2: Per Capita weight target in phase 2survivors: number of targets surviving until harvest in ph 2deathbintarget: binary survival to select only pots with full set of target species in ph2
DOI: 10.5061/dryad.42p5n/1
title: Study 1 data
DOI: 10.5061/dryad.42p5n/2
title: Study 2 data

description: Collected at Princeton University.
DOI: 10.5061/dryad.561hm/1
title: Maximum likelihood phylogeny of the Attaleinae based on WRKY genes

description: Nexus file of alignment of 56 sequences for the maximum likelihood phylogeny of Attaleinae (Arecaceae) based on concatenation of seven nuclear WRKY genes (5.648 kb) analysed using PHYML software. The ML tree was applied to Mesquite software for optimization of genome sizes across the Attaleinae phylogeny for reconstruction of ancestral genome sizes.
DOI: 10.5061/dryad.7st12/1
title: Dryad entry for MEC-15-0652.R1

description: Excel file with raw data for all figures except Figure 5A, which is uploaded as a separate Excel file.
DOI: 10.5061/dryad.7st12/2
title: WinQTL data for Fig 5A - QTL mapping of aphid progeny on B73xKY21 RILs

description: Excel file with raw data for the quantitative trait mapping of caterpillar-induced aphid resistance that is shown in Figure 5A. This file is in the right format for analysis with the WinQTL program.
DOI: 10.5061/dryad.802hc/1
title: Raw data from home visits and health questionnaires

description: Anonymised data generated for a selected group of immigrant families in Malmö, Sweden, who were living in a disadvantaged neighbourhood. Home visits were undertaken to assess family member's health and apartment characteristics. Variable explanations are included in the file
DOI: 10.5061/dryad.87f03/1
title: Participants' data
DOI: 10.5061/dryad.9gn07/1
title: SNP, insertion, and deletion calls made by GATK on panel of melanoma cell lines

description: VCF file was generated using GATK
DOI: 10.5061/dryad.9gn07/2
title: Sample ID and coverage stats table

description: Table contains columns for mapping cell lines to exome files, as well as average coverage and quantification of bases that had a Phred quality score of 20 or better.
DOI: 10.5061/dryad.9gn07/4
title: 1120AJM0001

description: Archive of BAM files generated from exome sequencing of 16 melanoma cell lines. Exome sequences were generated using a combination of Agilent and NimbleGen captures. Variant calls as well as insertion and deletion calls were made using GATK.
DOI: 10.5061/dryad.9gn07/5
title: 1120AJM0002

description: Archive of BAM files generated from exome sequencing of 16 melanoma cell lines. Exome sequences were generated using a combination of Agilent and NimbleGen captures. Variant calls as well as insertion and deletion calls were made using GATK.
DOI: 10.5061/dryad.9gn07/6
title: 1120AJM0003

description: Archive of BAM files generated from exome sequencing of 16 melanoma cell lines. Exome sequences were generated using a combination of Agilent and NimbleGen captures. Variant calls as well as insertion and deletion calls were made using GATK.
DOI: 10.5061/dryad.9gn07/7
title: 1316AJM0001

description: Archive of BAM files generated from exome sequencing of 16 melanoma cell lines. Exome sequences were generated using a combination of Agilent and NimbleGen captures. Variant calls as well as insertion and deletion calls were made using GATK.
DOI: 10.5061/dryad.9gn07/8
title: 1316AJM0002

description: Archive of BAM files generated from exome sequencing of 16 melanoma cell lines. Exome sequences were generated using a combination of Agilent and NimbleGen captures. Variant calls as well as insertion and deletion calls were made using GATK.
DOI: 10.5061/dryad.9ph68/5
title: Shapefile of Madagascar ecoregions

description: Shapefile of Madagascar ecoregions. Code: 1=spiny, 2=mangrove, 3=moist, 4=dry.
DOI: 10.5061/dryad.9ph68/6
title: Climatic projections for Madagascar

description: Climatic projections from seven IPCC CMIP5 global climate models (GCMs) for years 2050 and 2080 following two representative concentration pathways (RCPs): RCP 4.5 and RCP 8.5. The seven GCMs are: ACCESS 1.0 (ac), CCSM4 (cc), GISS-E2-R (gs), HadGEM2-ES (he), IPSL-CM5A-LR (ip), MIROC5 (mc) and NorESM1-M (no). The projections are for the following bioclimatic variables: bio1=mean annual temperature, bio4=temperature seasonality, bio12=annual precipitation.
DOI: 10.5061/dryad.9ph68/7
title: Multiband raster of explicative variables.

description: Multiband raster of explicative variables for the ACD model. The raster includes the following bands: elevation, EVI, VCF, mean annual temperature, temperature seasonality and annual precipitation. EVI is scaled between 0 and 10000 so that the raster type can be "INT2S". EVI must be rescaled between 0 and 1 to be used with the Random Forests model.
DOI: 10.5061/dryad.9ph68/8
title: Multiband raster for computing ACD by forest type

description: Multiband raster for computing ACD by forest type. The raster includes four bands for: Madagascar forest extent in 2010, ecoregions, Saatchi's carbon map and Baccini's biomass map.
DOI: 10.5061/dryad.9ph68/9
title: R script for reproducibility

description: The R script can be used to reproduce the results of the study. Associated data are available on the Dryad repository. Load the data in your working directory and create a "./results" directory to save the outputs.
DOI: 10.5061/dryad.d58b8/34
title: 349AT_R2

description: Second read pairs for Sample 349 AT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/35
title: 349BT_R1

description: First read pairs for Sample 349 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/36
title: 349BT_R2

description: Second read pairs for Sample 349 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/37
title: 378BT_R1

description: First read pairs for Sample 378 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.d58b8/38
title: 378BT_R2

description: Second read pairs for Sample 378 BT, in fastq format. See Table 1 in text.
DOI: 10.5061/dryad.hr0km/1
title: PrimateArmpitOTUsheet

description: This data file is the raw OTU chart of our primate armpit samples.
DOI: 10.5061/dryad.hr0km/2
title: PrimateArmpitL2

description: This files contains operational taxonomic units at the phyla level (L2) from our primate armpit samples after rarefaction at 1,000 reads.
DOI: 10.5061/dryad.hr0km/3
title: PrimateArmpitL6

description: This files contains operational taxonomic units at the genera level (L6) from our primate armpit samples after rarefaction at 1,000 reads.
DOI: 10.5061/dryad.j4389/2
title: Climatic variables

description: Climatic variables used for niche comparison
DOI: 10.5061/dryad.j4389/3
title: Morphological data

description: Landmarks coordinates of the fore- and hindwings of each individuals used in the morphometric analysis.
DOI: 10.5061/dryad.j4389/4
title: Catalog of loci

description: Stacks catalog of loci
DOI: 10.5061/dryad.j4389/5
title: Variants

description: The variants files- both the unfiltered variants as well as the variants used in the ABC analyses
DOI: 10.5061/dryad.j4389/6
title: ddRADseq data

description: ddRAD sequences of each individual used in the genetic analysis
DOI: 10.5061/dryad.m186r.2
title: Data from: Parallel evolution of local adaptation and reproductive isolation in the face of gene flow
DOI: 10.5061/dryad.m186r.2/1.2
title: Lsaxatilis_AFLPs-1

description: AFLP data file. See 'readme' for additional description
DOI: 10.5061/dryad.m186r.2/2.2
title: Lsaxatilis_landmarks-1

description: Landmark coordinate file
DOI: 10.5061/dryad.m186r.2/3.2
title: Lsaxatilis_morphometrics-1

description: Relative warps and scar data
DOI: 10.5061/dryad.n27h3/2
title: Lambert et al_suppl material

description: 1. Supplementary Figures 2. Size and Weight Estimates for Messapicetus gregarius 3. Size and Weight Estimates for Sardinops sp. cf S. sagax 4. Comparison of Cervical Vertebrae Ankylosis and Size among Ziphiidae 5. Comparison of Relative Humeral Length among Ziphiidae 6. Abbreviations for Institutions 7. Supplementary References
DOI: 10.5061/dryad.p2g11/1
title: Zebrafish_Positions_data

description: The files contain the positions of the zebrafish in different environments (homogeneous or heterogeneous) for one hour. As indicated by the headers, the first column is the time (in s) while the others are the X and Y coordinates (in m) of the different fish in the tank. There are 10 replicates for each group size (1 or 10) and each environment (homogeneous or heterogeneous) for a total of 40 files.
DOI: 10.5061/dryad.q1h04/1
title: OccupyWallStreet
DOI: 10.5061/dryad.r21q1/1
title: Louhi et al. Original data

description: Original data from the experimental exposure of fish to Flavobacterium columnare and Diplostomum pseudospathaceum. The data present survival times (hours) and numbers of Diplostomum in the eye lenses for fish in single flavobacterial infections (strains 1-6), single Diplostomum infections (genotypes a-e), and in all pairwise co-infection combinations of the strains and genotypes.
DOI: 10.5061/dryad.rr4pm/1
title: Tyson Forest Dynamics Plot leaf functional trait data

description: Data on functional traits (leaf size, specific leaf area (SLA), leaf water content (LWC), leaf toughness, and chlorophyll content) measured on three leaves each of 681 individuals across for 35 woody plant species in a 12-ha section of the Tyson Forest Dynamics Plot, Missouri, USA
DOI: 10.5061/dryad.s18gk/6
title: HUC12WatershedBoundaries

description: This shapefile includes the indices and prioritization scenarios calculated in Steps 4-7 in the methods. This includes the management benefit index (Step 4), management effort Index (Step 5), management feasibility index (Step 6), and the prioritization scenarios of maximum ecological benefit, maximum benefit with minimum effort, and the comprehensive prioritization (Step 7). All indices and prioritization scenarios are calculated for "managment units" which were the HUC12 watershed designations (Available from http://nhd.usgs.gov/wbd.html). Key fields: Management Benefit Index (BenefitInd). Management Ease Index (MgtEaseInd). Management Effort Index (Effort_Nor). Ecological Benefit (EcBenefit). Maximum Ecological Benefit with Minimum Effort (EcBenEffor). Comprehensive Prioritization (CompRank)
DOI: 10.5061/dryad.vr315/1
title: Australia's attitudes towards climate change _PLOSONE data 100715

description: Data collected during December 2011 by the Online Research Unit. Data analysed using SPSS.
DOI: 10.5061/dryad.09dg6/1
title: Wanderley et al_data
DOI: 10.5061/dryad.1d63s/4
title: measurement_error_data_biometry_O.spinipes

description: This table shows the biometric measurements of Odynerus spinipes used in estimating the measurement error.
DOI: 10.5061/dryad.29pb4/1
title: Ode et al. OIK-03076 data

description: Excel file containing results of a greenhouse study of the effects of parasitized and unparasitized herbivores on glucosinolate concentrations of four different cabbage populations (3 wild and 1 cultivar).  Data on the correlations between glucosinolate profiles on herbivore and parasitoid fitness parameters are also given.
DOI: 10.5061/dryad.2rd32/1
title: Microsatellite genotypes formatted for the program STRUCTURE

description: Input file for STRUCTURE. One line format. Accompanying data for each individual listed in file Genotypes and Results
DOI: 10.5061/dryad.2rd32/2
title: PCoA Input file

description: Distance matrix used as input for PCOA.  Data associated with each individual is available in the file Genotypes and Results.
DOI: 10.5061/dryad.2rd32/3
title: Genotypes and Results

description: Genotypes, results of 3Q and Structure analysis, location data for all individuals
DOI: 10.5061/dryad.50s1g/1
title: Chtonobdella tanae sp. n. holotype (AU81) from Queensland Australia, μCT volumetric video rendering of external and internal features.

description: Video starts with whole-body (anterior to the right) external feature rendering viewed dorsally, laterally, and then ventrally, followed by whole-body internal feature rendering viewed dorsally, laterally, and then ventrally. Video zooms in on eyespots (green), jaws (magenta), ganglia (yellow), and gastric tissue (grey) viewed dorsally, laterally, and then ventrally. Video moves posteriorly, focusing on male median reproductive tissues (shades of blue), female median reproductive tissues (pink), and testisacs (red) viewed dorsally, laterally, and then ventrally. Video goes to the posterior focusing on intestinal tissue (pale green) viewed dorsally, laterally, and then ventrally. Video then focuses on the auricle cavities (blue), finishing on the dorsal view of whole-body internal feature.
DOI: 10.5061/dryad.50s1g/2
title: Chtonobdella tanae sp. n. holotype (AU81) from Queensland Australia, μCT projections.

description: Specimen fixed in 10% formalin and 70% ethanol for over a decade was refixed with AFA, stained in osmium tetroxide, and then scanned in a GE v|tome|x s240.
DOI: 10.5061/dryad.50s1g/3
title: Juvenile Macrobdella decora, μCT projections.

description: Specimens were fixed first with either ethanol (small sized specimen on left), glutaraldehyde (large sized specimen in middle), or AFA (medium sized specimen on right); stained in osmium tetroxide; and then scanned in a GE v|tome|x s240.
DOI: 10.5061/dryad.55c3d/1
title: Appendix S1_R1

description: Appendix S1 Species, collection numbers, locomotor modes and morphometric data.
DOI: 10.5061/dryad.55c3d/2
title: Appendix S2

description: Appendix S2 Linear regressions. Epiphyses removal correction; data type.
DOI: 10.5061/dryad.55c3d/3
title: Appendix S3_R1

description: Appendix 3 Classification of cases in the DFA with their a posteriori probabilities. Misclassifications are marked with an asterisk (*).
DOI: 10.5061/dryad.55c3d/4
title: LIRESetal_Fig S1
DOI: 10.5061/dryad.5p51r/1
title: Tachigali_matrix_chomicki_et_al_PRSB

description: Tachigali matrix containing 3 plastid markers (matK, trnL-trnF, psbA-trnH) and one nuclear (ITS)
DOI: 10.5061/dryad.66j20/1
title: Measurement_data

description: Data on individual body size for both Ringed (A. annulatum) and Spotted (A. maculatum) Salamanders
DOI: 10.5061/dryad.66j20/2
title: Survival_Data

description: Survival data for both Ringed (A. annulatum) and Spotted Salamanders (A. maculatum)
DOI: 10.5061/dryad.66j20/3
title: Injury

description: Injury data summarized by tank from Ringed Salamanders (A. annulatum
DOI: 10.5061/dryad.66j20/4
title: R script for analysis

description: R code to repeat the analyses and figures
DOI: 10.5061/dryad.6rs23/3
title: Sub_sampling_data_eDNA_TWG_occupancy

description: Raw field and lab data for comparative analysis of eDNA to traditional methods for monitoring endangered tidewater goby along California's north coast.
DOI: 10.5061/dryad.6rs23/4
title: Multi-method occupancy analysis input data PRESENCE 7.5

description: Input data for multi-method occupancy analysis using Program Presence 7.5.
DOI: 10.5061/dryad.6rs23/5
title: Hierarchical Occupancy Model R Code

description: R code for hierarchical occupancy analysis using WinBUGS.
DOI: 10.5061/dryad.6rs23/6
title: Hierarchical Occupancy Model Input Data

description: Data input file for hierarchical occupancy analysis using WinBUGS.