cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.5497823
title: EMUE-D5-5-Microflow

description: The objective of this study was to compare uncertainty evaluation methodologies for very small flow rates, close to zero, during calibration. To exemplify the mathematical treatment of the uncertainty evaluation, experimental values arising from a syringe pump calibration were used to assess the viability and advantage of using alternative methods to the traditional GUM approach (law of propagation of uncertainty), namely, Monte Carlo and Bayesian methods, to quantify measurement uncertainty when the conditions for the applicability of the GUM uncertainty framework are not met. Such conditions relate to the extent of the non-linearity of the model, the number and magnitude of quantities with non-normal distributions and the ability to produce meaningful results for a specific application. Validation should always be attempted whenever the application of the GUM is questionable. Files contained in the dataset are: A2.3.4 Microflow.pdf: Report “Uncertainty calculation methodologies in microflow measurements: comparison of GUM, GUM-S1 and Bayesian approach” Case 1.xls: Excel spreadsheet containing the data associated with case study 1. Case 2.xls: Excel spreadsheet containing the data associated with case study 2.
DOI: 10.5281/zenodo.5497822
title: EMUE-D5-5-Microflow

description: The objective of this study was to compare uncertainty evaluation methodologies for very small flow rates, close to zero, during calibration. To exemplify the mathematical treatment of the uncertainty evaluation, experimental values arising from a syringe pump calibration were used to assess the viability and advantage of using alternative methods to the traditional GUM approach (law of propagation of uncertainty), namely, Monte Carlo and Bayesian methods, to quantify measurement uncertainty when the conditions for the applicability of the GUM uncertainty framework are not met. Such conditions relate to the extent of the non-linearity of the model, the number and magnitude of quantities with non-normal distributions and the ability to produce meaningful results for a specific application. Validation should always be attempted whenever the application of the GUM is questionable. Files contained in the dataset are: A2.3.4 Microflow.pdf: Report “Uncertainty calculation methodologies in microflow measurements: comparison of GUM, GUM-S1 and Bayesian approach” Case 1.xls: Excel spreadsheet containing the data associated with case study 1. Case 2.xls: Excel spreadsheet containing the data associated with case study 2.
DOI: 10.6084/m9.figshare.16586915.v1
title: Atlas Of Coevolution

description: Alignment, phylogeny, substitution mapping, simulation results for the atlas of protein coevolution.<br>
DOI: 10.25345/c5gg2f
title: MassIVE MSV000088080 - The 2020 ABRF Beer Study: beer proteomics at the global scale
title: Beer is one of the oldest and most widely consumed beverages in the world. It contains a complex mixture of proteins from several organisms including plants (barley, hops, rice, wheat) and yeast, depending on the beer. It has been argued that fermentation of grains was responsible for our shift away from being a hunter-gatherer society, leading to social and technological advancements over thousands of years, including mass spec-based proteomics. The Proteomics Research Group (PRG) in the Association of Biomolecular Resource Facilities brought together an international consortium of proteomics laboratories (69 laboratories from 33 countries) to perform beer proteomics. An aliquot of specially brewed beer from the UC Davis Brewing Program was sent to 52 labs, and participants were encouraged to also use a widely available commercial beer (Heineken) and any other beer. Of the 69 laboratories that signed up for the study, 35 returned data. Of these, 32 analyzed the PRG Beer and 17 analyzed Heineken (14 analyzed both). When shipping of the PRG Beer was prohibitive, participants were encouraged to use Heineken due to its global availability and perceived quality control. Participants were also encouraged to analyze other beers of their choosing, and 79 other beers were analyzed. In total there were 357 beer injections on 13 different types of mass spectrometers around the world. In addition to helping connect scientists in trying times, we have also demonstrated the utility of multi-center studies with accessible materials.
DOI: 10.6084/m9.figshare.16598648.v1
title: DeepDock training dataset curated with Schrodinger

description: Data set used to train and evaluate DeepDock. The file contains information of ~16K protein ligand complexes extracted from the general set of PDBbind database v2019. Targets have been preprocessed using MaSSIF and ligands curated using Schrodinger Maestro. They are ready to be used as input using Pytorch geometric. The target is represented by a mesh, each node contains 4 physchem properties. The ligand is represented as a 2D graph where node features represent atom type and edge features represent bond types.
DOI: 10.6084/m9.figshare.16598648
title: DeepDock training dataset curated with Schrodinger

description: Data set used to train and evaluate DeepDock. The file contains information of ~16K protein ligand complexes extracted from the general set of PDBbind database v2019. Targets have been preprocessed using MaSSIF and ligands curated using Schrodinger Maestro. They are ready to be used as input using Pytorch geometric. The target is represented by a mesh, each node contains 4 physchem properties. The ligand is represented as a 2D graph where node features represent atom type and edge features represent bond types.
DOI: 10.5281/zenodo.4641259
title: Data for Milky Way Mid-Infrared Spitzer Spectroscopic Extinction Curves: Continuum and Silicate Features

description: Spitzer IRS spectra and measured extinction curves for a sample of Milky Way sightlines. Paper describing the details is Gordon et al. (2021, ApJ, 916, 33). https://ui.adsabs.harvard.edu/abs/2021ApJ...916...33G/abstract Associated github repository is https://github.com/karllark/spitzer_mir_ext
DOI: 10.5281/zenodo.4641258
title: Data for Milky Way Mid-Infrared Spitzer Spectroscopic Extinction Curves: Continuum and Silicate Features

description: Spitzer IRS spectra and measured extinction curves for a sample of Milky Way sightlines. Paper describing the details is Gordon et al. (2021, ApJ, 916, 33). https://ui.adsabs.harvard.edu/abs/2021ApJ...916...33G/abstract Associated github repository is https://github.com/karllark/spitzer_mir_ext
DOI: 10.5281/zenodo.5498285
title: ED2-hydro model output from simulations at Barro Colorado Island

description: Monthly model output from the Ecosystem Demography model version 2 with hydrodynamics (ED2; Medvigy et al., 2009; Powell et al., 2018) run at Barro Colorado Island (BCI). ED2 was initialized from bare ground at BCI and run with recycled 2008-2014 observed meteorology (i.e. “BASE”) until predictions of above ground biomass (AGB) reached dynamic equilibrium after 700 years (Powell et al., 2018; referred to as simulation year 0 in the simulations presented here)⁠. The four data sets provided here all start after the spin up period and each provide a 50 year (monthly time step) time series of selected ED2 history variables under a particular precipitation scenario: 1) a synthetic El Niño time series (Powell <em>et al.</em>, 2017) which produces two exceptionally strong El Niño events within 30 years (the “ENSO” scenario), 2) a “WET” scenario where precipitation increased 30% compared to BASE precipitation, and 3) a “DRY-DS” scenario where dry season (January–April) precipitation was reduced 75% compared to BASE and 4) a continuation of BASE meteorology. <strong><strong>Medvigy D</strong>, <strong>Wofsy SC</strong>, <strong>Munger JW</strong>, <strong>Hollinger DY</strong>, <strong>Moorcroft PR</strong></strong>. <strong>2009</strong>. Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2. <em>Journal of Geophysical Research: Biogeosciences</em> <strong>114</strong>: 1–21. <strong><strong><strong>Powell TL</strong>, <strong>Koven CD</strong>, <strong>Johnson DJ</strong>, <strong>Faybishenko B</strong>, <strong>Fisher RA</strong>, <strong>Knox RG</strong>, <strong>McDowell NG</strong>, <strong>Condit R</strong>, <strong>Hubbell SP</strong>, <strong>Wright SJ</strong>, <em>et al.</em></strong></strong> <strong>2018</strong>. Variation in hydroclimate sustains tropical forest biomass and promotes functional diversity. <em>New Phytologist</em> <strong>219</strong>: 932–946. <strong><strong>Powell T</strong>, <strong>Kueppers L</strong>, <strong>Paton S</strong></strong>. <strong>2017</strong>. Seven years (2008-2014) of meteorological observations plus a synthetic El Nino drought for BCI Panama.
DOI: 10.5281/zenodo.5498284
title: ED2-hydro model output from simulations at Barro Colorado Island

description: Monthly model output from the Ecosystem Demography model version 2 with hydrodynamics (ED2; Medvigy et al., 2009; Powell et al., 2018) run at Barro Colorado Island (BCI). ED2 was initialized from bare ground at BCI and run with recycled 2008-2014 observed meteorology (i.e. “BASE”) until predictions of above ground biomass (AGB) reached dynamic equilibrium after 700 years (Powell et al., 2018; referred to as simulation year 0 in the simulations presented here)⁠. The four data sets provided here all start after the spin up period and each provide a 50 year (monthly time step) time series of selected ED2 history variables under a particular precipitation scenario: 1) a synthetic El Niño time series (Powell <em>et al.</em>, 2017) which produces two exceptionally strong El Niño events within 30 years (the “ENSO” scenario), 2) a “WET” scenario where precipitation increased 30% compared to BASE precipitation, and 3) a “DRY-DS” scenario where dry season (January–April) precipitation was reduced 75% compared to BASE and 4) a continuation of BASE meteorology. <strong><strong>Medvigy D</strong>, <strong>Wofsy SC</strong>, <strong>Munger JW</strong>, <strong>Hollinger DY</strong>, <strong>Moorcroft PR</strong></strong>. <strong>2009</strong>. Mechanistic scaling of ecosystem function and dynamics in space and time: Ecosystem Demography model version 2. <em>Journal of Geophysical Research: Biogeosciences</em> <strong>114</strong>: 1–21. <strong><strong><strong>Powell TL</strong>, <strong>Koven CD</strong>, <strong>Johnson DJ</strong>, <strong>Faybishenko B</strong>, <strong>Fisher RA</strong>, <strong>Knox RG</strong>, <strong>McDowell NG</strong>, <strong>Condit R</strong>, <strong>Hubbell SP</strong>, <strong>Wright SJ</strong>, <em>et al.</em></strong></strong> <strong>2018</strong>. Variation in hydroclimate sustains tropical forest biomass and promotes functional diversity. <em>New Phytologist</em> <strong>219</strong>: 932–946. <strong><strong>Powell T</strong>, <strong>Kueppers L</strong>, <strong>Paton S</strong></strong>. <strong>2017</strong>. Seven years (2008-2014) of meteorological observations plus a synthetic El Nino drought for BCI Panama.
DOI: 10.5281/zenodo.5498170
title: SIA-BRA: The carbon and nitrogen stable isotope ratios of animals of Brazilian biomes and coastal marine areas

description: SIA-BRA is a compilation of C and N stable isotope ratios of terrestrial and aquatic animals sampled in Brazilian biomes and coastal-marine areas. The SIA-BRA contains 21,221 and 20,936 values of δ<sup>13</sup>C and δ<sup>15</sup>N of 21,804 non-captive wildlife specimens, excluding livestock production or laboratory experiments. There are 13,881 vertebrates and 7,923 invertebrates divided into 11 Phyla, with a clear dominance of Chordata (63%) and Arthropoda (30%), 36 classes, 154 orders, 473 families, 894 genera, and 1,157 species. Software format: Data are supplied as delimited text files (.csv).
description: For data use, please contact us.
DOI: 10.5281/zenodo.5498302
title: Life table data of studied species

description: Life table data of studied species
DOI: 10.5281/zenodo.5498301
title: Life table data of studied species

description: Life table data of studied species
DOI: 10.25824/redu/nyz2cu
title: UvitalProject.pdf

description: Research Proposal
DOI: 10.25824/redu/dfydov
title: DMP tool marco 2020User_Valued_innovations_for_social_Housing_Upgrading_through_Trans-Atlantic_Living_Labs.pdf

description: Data Managemt Plan
DOI: 10.25824/redu/gmh0pd
title: SCIENTIFIC_REPORT_2020_v12_28_12_2020.pdf

description: Annual report of the uvital research development
DOI: 10.25824/redu/6swncm
title: Replication data for: user-valued innovations for social housing upgrading through Trans-Atlantic living labs

description: Housing debates generally focus on new buildings, and there is scarce research on upgrading of existing housing. Upgrading can have positive social, health and financial outcomes for low-income populations. Upgrading the existing stock of social housing (SH) offers an opportunity to ease the effects of inadequate housing through improvements, reduce social costs, alleviate housing deficits and promote sustainability. Targeted upgrading efforts need impact sensitive processes, which involve stakeholders. These are primarily end-users, but also housing and construction companies, design professionals, etc who have specific, at times, conflicting needs and interests. Shifting from individual to more collective engagements, through innovative mediation, should bridge boundaries between stakeholders. This research premise is that by applying and refining Living Labs (LLs) in the SH context, user-valued innovations can be identified. Boundary Objects (BOs) with advanced communication tools (games, Augmented-AR, Virtual Reality-VR, sketches, Building Information Modelling-BIM) are investigated to support decision-making, contribute to idea generation and mediation. A transatlantic articulated nexus between research institutions in Brazil (BR), Germany (DE), the Netherlands (NL) and the United Kingdom (UK) will address social challenges through SH upgrading protocols. A shared research concept and design will be applied to ensure appropriate acknowledgement of cultural differences and to avoid ‘getting lost in translation’. Specifically orchestrated LLs are key, where each institution uses case studies to apply diverse tools to enable the visualisation of design alternatives and meaningful stakeholder engagement. Local and multinational transatlantic stakeholders will participate of the LLs. The continuous mutual exchange of experiences during the research facilitates learning and provides a comprehensive understanding of SH upgrading challenges and opportunities. A bridging strategy to support upgrading processes in different contexts, i.e. a protocol, will be the main outcome of the research. Outcomes include updated knowledge documentation on user-oriented SH upgrading and communication tools to intensify stakeholder collaboration. Research results will be continuously exchanged to enable up-scaling to wider contexts and to strengthen the proposed social innovation that promotes understanding of contextual aspects of stakeholder needs and values.
DOI: 10.5517/ccdc.csd.cc280qdf
title: CCDC 2086064: Experimental Crystal Structure Determination

description: Related Article: F. Knoch, D. Sellmann, B. Goetz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2811ky
title: CCDC 2086379: Experimental Crystal Structure Determination

description: Related Article: Axel Sabourin, Jeremy Dufour, Jean-Pierre Vors, David Bernier, Jean-Luc Montchamp|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28159t
title: CCDC 2086495: Experimental Crystal Structure Determination

description: Related Article: Xiao-yang Zhao|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2816xg
title: CCDC 2086545: Experimental Crystal Structure Determination

description: Related Article: Ramakotaiah Mulamreddy|2021|CSD Communication|||
description: Related Article: Ramakotaiah Mulamreddy, Xin Hou, Sylvain Chemtob, William D. Lubell|2021|Org.Lett.|23|5192|doi:10.1021/acs.orglett.1c01733
DOI: 10.5517/ccdc.csd.cc286bc6
title: CCDC 2091457: Experimental Crystal Structure Determination

description: Related Article: Lenka Krešáková, Anna Miňo, Mariia Holub, Juraj Kuchár, Alvaro Werner, Milagros Tomás, Erik Čižmár, Larry R. Falvello, Juraj Černák|2021|Inorg.Chim.Acta|527|120588|doi:10.1016/j.ica.2021.120588
DOI: 10.5517/ccdc.csd.cc286bg9
title: CCDC 2091460: Experimental Crystal Structure Determination

description: Related Article: Lenka Krešáková, Anna Miňo, Mariia Holub, Juraj Kuchár, Alvaro Werner, Milagros Tomás, Erik Čižmár, Larry R. Falvello, Juraj Černák|2021|Inorg.Chim.Acta|527|120588|doi:10.1016/j.ica.2021.120588
DOI: 10.5517/ccdc.csd.cc2869qj
title: CCDC 2091437: Experimental Crystal Structure Determination

description: Related Article: Lenka Krešáková, Anna Miňo, Mariia Holub, Juraj Kuchár, Alvaro Werner, Milagros Tomás, Erik Čižmár, Larry R. Falvello, Juraj Černák|2021|Inorg.Chim.Acta|527|120588|doi:10.1016/j.ica.2021.120588
DOI: 10.6073/pasta/caa90169fb5778d9bf129a27519a9da1
title: Infilled precipitation data for C1 chart recorder, 1952 - ongoing, daily

description: Precipitation data have been collected at the C1 climate station (3022 m asl) almost continuously from 1952 to the present. C1 is on locally level terrain on the southeastern flank of Niwot Ridge, 9.7 km east of the Continental Divide. Surrounding vegetation is closed-canopy subalpine conifer forest. Through 1964, precipitation was recorded using an unshielded U.S. Weather Bureau standard totalizing gauge, with observations manually recorded on an approximately weekly basis. The gauge was located in an open area with sparse tree cover adjacent to the forest proper. Starting in late 1961, daily precipitation has been recorded using a Belfort Universal weighing-bucket gauge with chart recorder in an 8-m diameter clearing in the forest; the forest provides natural shielding for the gauge. The two records were assessed for an impact of this station change on record homogeneity and merged (see Methods). Missing daily data were infilled and multiday records were parsed to dailies (see Methods).
DOI: 10.5519/qd.x5s59cze
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (16512 records)
DOI: 10.6084/m9.figshare.16598768
title: Foodweb_Central_Andes_9_10_2021.xlsx

description: Modern and archaeological plants and fauna compiled for local food web studies.
DOI: 10.6084/m9.figshare.16598768.v1
title: Foodweb_Central_Andes_9_10_2021.xlsx

description: Modern and archaeological plants and fauna compiled for local food web studies.
DOI: 10.48484/nj11-8k34
title: Noachian Bedrock at Endeavour Crater: Data Tables, Statistical Modeling and Locator Images
DOI: 10.6084/m9.figshare.16598789
title: array.1.xlsx

description: Gene array of intestinal mucosal scraping of Il-1beta kockout mice
DOI: 10.6084/m9.figshare.16598789.v1
title: array.1.xlsx

description: Gene array of intestinal mucosal scraping of Il-1beta kockout mice
DOI: 10.5281/zenodo.5496213
title: Geochemistry and petrography of martian meteorite Northwest Africa 11115: A rare earth element-enriched olivine-phyric shergottite closely linked to Northwest Africa 1068

description: This is the Electronic Appendix of the manuscript "<strong>Geochemistry and petrography of martian meteorite Northwest Africa 11115: A rare earth element-enriched olivine-phyric shergottite closely linked to Northwest Africa 1068</strong>", by M. Melwani Daswani, N. Greber, J. Hu, R. C. Greenwood, and P. R. Heck, submitted to <em>Meteoritics & Planetary Science</em>. Corresponding author: M. Melwani Daswani (daswani@jpl.caltech.edu) The compressed folder contains two files: 1) <strong>NWA11115_CT_scan_TIFF_substack.tif</strong> This is a TIFF image stack of the CT scan of the full NWA 11115 sample. Open in a program such as ImageJ (Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, https://imagej.nih.gov/ij/, 1997-2018). 2) <strong>NWA11115_CT_scan_60FPS_JPEG.avi</strong> This is a video file of the CT scan of the same NWA 11115 sample. The TIFF stack was converted to a video file (.avi), compressed to JPEG quality, and at a rate of 60 frames per second. Open this file with software such as VLC (https://www.videolan.org/vlc/). <strong>Acknowledgements</strong> The authors acknowledge T. Boudreaux for donating NWA 11115 to the Field Museum, J. Greer and J. Holstein for help with sample preparation, L. Kööp and B. Strack for SEM support, S. Rastegar for preliminary SEM analysis, L. Dussubieux for LA-ICP-MS support, A. I. Neander and Z.-X. Luo for CT scanning and support, and J. Filiberto and A. Treiman for useful discussions. We thank Thomas Pettke for assistance with LA-ICP-MS analyzes of the pressed powder pellets at the University of Bern. GPS Division analytical facilities at Caltech and Chi Ma are thanked for the support on EMPA analysis. PRH acknowledges support from the Tawani Foundation. MMD’s portion of the work was done partly as a private venture and not in the author’s capacity as an employee of the Jet Propulsion Laboratory, California Institute of Technology. The authors declare no competing interests. EOF
DOI: 10.5281/zenodo.5496212
title: Geochemistry and petrography of martian meteorite Northwest Africa 11115: A rare earth element-enriched olivine-phyric shergottite closely linked to Northwest Africa 1068

description: This is the Electronic Appendix of the manuscript "<strong>Geochemistry and petrography of martian meteorite Northwest Africa 11115: A rare earth element-enriched olivine-phyric shergottite closely linked to Northwest Africa 1068</strong>", by M. Melwani Daswani, N. Greber, J. Hu, R. C. Greenwood, and P. R. Heck, submitted to <em>Meteoritics & Planetary Science</em>. Corresponding author: M. Melwani Daswani (daswani@jpl.caltech.edu) The compressed folder contains two files: 1) <strong>NWA11115_CT_scan_TIFF_substack.tif</strong> This is a TIFF image stack of the CT scan of the full NWA 11115 sample. Open in a program such as ImageJ (Rasband, W.S., ImageJ, U. S. National Institutes of Health, Bethesda, Maryland, USA, https://imagej.nih.gov/ij/, 1997-2018). 2) <strong>NWA11115_CT_scan_60FPS_JPEG.avi</strong> This is a video file of the CT scan of the same NWA 11115 sample. The TIFF stack was converted to a video file (.avi), compressed to JPEG quality, and at a rate of 60 frames per second. Open this file with software such as VLC (https://www.videolan.org/vlc/). <strong>Acknowledgements</strong> The authors acknowledge T. Boudreaux for donating NWA 11115 to the Field Museum, J. Greer and J. Holstein for help with sample preparation, L. Kööp and B. Strack for SEM support, S. Rastegar for preliminary SEM analysis, L. Dussubieux for LA-ICP-MS support, A. I. Neander and Z.-X. Luo for CT scanning and support, and J. Filiberto and A. Treiman for useful discussions. We thank Thomas Pettke for assistance with LA-ICP-MS analyzes of the pressed powder pellets at the University of Bern. GPS Division analytical facilities at Caltech and Chi Ma are thanked for the support on EMPA analysis. PRH acknowledges support from the Tawani Foundation. MMD’s portion of the work was done partly as a private venture and not in the author’s capacity as an employee of the Jet Propulsion Laboratory, California Institute of Technology. The authors declare no competing interests. EOF