cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.9685778
title: Additional file 23: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S10. The differential alternative splicing events in 5â h, 15â h and 30â h germinating seeds and leaf samples. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.9685778.v1
title: Additional file 23: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S10. The differential alternative splicing events in 5â h, 15â h and 30â h germinating seeds and leaf samples. (XLSX 210 kb)
DOI: 10.6084/m9.figshare.9685781
title: Additional file 24: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S11. Re-characterizing transcription isoforms of genes involved in gossypol biosynthesis pathway. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9685781.v1
title: Additional file 24: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S11. Re-characterizing transcription isoforms of genes involved in gossypol biosynthesis pathway. (XLSX 16 kb)
DOI: 10.6084/m9.figshare.9685784
title: Additional file 25: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S12. The primers used for RT-PCR analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.9685784.v1
title: Additional file 25: of Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe

description: Table S12. The primers used for RT-PCR analysis. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.19625501.v1
title: Additional file 8 of Identification of a pyroptosis-related prognostic signature in breast cancer

description: Additional file 8.
DOI: 10.6084/m9.figshare.23819853.v1
title: Additional file 2 of Clinical plasma cells-related genes to aid therapy in colon cancer

description: Additional file 2.
DOI: 10.6084/m9.figshare.18585676
title: Additional file 3 of An integrative analysis of DNA methylation and transcriptome showed the dysfunction of MAPK pathway was involved in the damage of human chondrocyte induced by T-2 toxin

description: Additional file 3: Supplementary Table 2.
DOI: 10.25919/10p5-ma84
title: IN2019_T01 Southern Ocean Transit Bathymetry 10m - 210m Multi-resolution AusSeabed products

description: This layer group describes multibeam echosounder data collected on RV Investigator voyage IN2019_T01 titled "Collaborative Australian Postgraduate Sea Training Alliance (CAPSTAN)". The voyage took place between April 29 and May 9, 2019, departing from Hobart (TAS) and arriving in Fremantle (WA).

This voyage was part of the Collaborative Australian Postgraduate Sea Training Alliance Network (CAPSTAN), a post-graduate at sea training initiative on the RV Investigator. Governed by a network of leading industry and university partners from within marine science and geoscience, CAPSTAN is a first of its kind programme which will transform the way marine science education is delivered. A truly national education initiative, CAPSTAN offers a national approach to teaching and learning in the marine sciences whilst providing a platform for institutional, industrial and generational knowledge transfer and collaboration.

Our aims have arisen out of a national desire to:
• Develop an effective, efficient form of vessel‐based tertiary education by involving stakeholders and post-graduate students, and by pooling national tertiary teaching expertise and personnel resources;
• Develop a national curriculum to standardise teaching protocols/methods and learning outcomes in this area in conjunction with the new data collection equipment and facilities of the Marine National Facility RV Investigator, the Integrated Marine Observatory System and external stakeholders, and;
• Provide and test a multi‐disciplinary research‐based teaching module for marine science postgraduates with opportunities for student mobility and national network development.

This dataset is published with the permission of CSIRO. Not to be used for navigational purposes.

The dataset contains bathymetry grids of 10m to 210m resolution of the Southern Ocean Transit produced from the processed EM122 and EM710 bathymetry data.
DOI: 10.6084/m9.figshare.12285422.v1
title: Additional file 5 of Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: identification of candidate genes for the neurodevelopmental and eye manifestations

description: Additional file 5:Table S2. Entire gene list arranged in descending order of significance level (pval), The top 16 genes with padj &lt; 0.1 are in bold type.
DOI: 10.6084/m9.figshare.22793030
title: Database for "Soil inorganic carbon stock and its changes across the Tibetan Plateau during the 1980s–2020s"

description: Database for "Soil inorganic carbon stock and its changes across the Tibetan Plateau during the 1980s–2020s"
DOI: 10.6084/m9.figshare.18585717.v1
title: Additional file 1 of The SF3B1R625H mutation promotes prolactinoma tumor progression through aberrant splicing of DLG1

description: Additional file 1: Table S1. Primers used for qRT-PCR in this study. Table S2. The clinical data of 15 prolactinoma patients. Table S3. siRNA used in this study. Table S4. Antibodies used in this study. Table S5. Differentially expressed gene in Sf3b1 mutant GH3 cells. Table S6. Differentially expressed gene in SF3B1 mutant human prolactinoma. Table S7. Significant alternative splicing events in Sf3b1 mutant GH3 cells. Table S8. Gene Ontology (GO) function of AS genes in Sf3b1 mutant GH3 cells. Table S9. Significant alternative splicing events in SF3B1 mutant human prolactinoma. Table S10. Gene Ontology (GO) function of AS genes in SF3B1 mutant human prolactinoma. Table S11. Gene Ontology (GO) function of differentially expressed genes in Sf3b1 mutant GH3 cells. Table S12. KEGG pathway analysis of differentially expressed genes in Sf3b1 mutant GH3 cells. Table S13. KEGG pathway analysis of differentially expressed genes in SF3B1 mutant human prolactinoma.
DOI: 10.6084/m9.figshare.18585717
title: Additional file 1 of The SF3B1R625H mutation promotes prolactinoma tumor progression through aberrant splicing of DLG1

description: Additional file 1: Table S1. Primers used for qRT-PCR in this study. Table S2. The clinical data of 15 prolactinoma patients. Table S3. siRNA used in this study. Table S4. Antibodies used in this study. Table S5. Differentially expressed gene in Sf3b1 mutant GH3 cells. Table S6. Differentially expressed gene in SF3B1 mutant human prolactinoma. Table S7. Significant alternative splicing events in Sf3b1 mutant GH3 cells. Table S8. Gene Ontology (GO) function of AS genes in Sf3b1 mutant GH3 cells. Table S9. Significant alternative splicing events in SF3B1 mutant human prolactinoma. Table S10. Gene Ontology (GO) function of AS genes in SF3B1 mutant human prolactinoma. Table S11. Gene Ontology (GO) function of differentially expressed genes in Sf3b1 mutant GH3 cells. Table S12. KEGG pathway analysis of differentially expressed genes in Sf3b1 mutant GH3 cells. Table S13. KEGG pathway analysis of differentially expressed genes in SF3B1 mutant human prolactinoma.
DOI: 10.6084/m9.figshare.18585754.v1
title: Additional file 5 of CircNFIB inhibits tumor growth and metastasis through suppressing MEK1/ERK signaling in intrahepatic cholangiocarcinoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.18585754
title: Additional file 5 of CircNFIB inhibits tumor growth and metastasis through suppressing MEK1/ERK signaling in intrahepatic cholangiocarcinoma

description: Additional file 5.
DOI: 10.6084/m9.figshare.18585822
title: Additional file 2 of Metabolic synthetic lethality by targeting NOP56 and mTOR in KRAS-mutant lung cancer

description: Additional file 2: Table S1. Cell lines used in this study. Table S2. Inhibitors used for synthetic lethal chemical screens. Table S3. Antibodies used in this study. Table S4.KRAS synthetic lethal (SL) genes.
DOI: 10.5281/zenodo.10120305
title: Code and dataset for Barthel et. al. (2024)

description: This archive contains data, code, and plotting scripts needed to generate the results described in Barthel et.al. (2024) A non-intrusive machine learning framework for debiasing long-time coarse resolution climate simulations and quantifying rare events statistics. The archive includes raw and processed data from simulations of a 2  layer Quasi-Geostrophic model generated using an in-house solver, simulations of DOE's E3SM Atmosphere Model Version 2 (EAMv2), and ERA5 reanalysis data.  A detailed description of the model and simulations can be found in Barthel et. al. (2024).
DOI: 10.5281/zenodo.10657047
title: Code and dataset for Barthel et. al. (2024)

description: This archive contains data, code, and plotting scripts needed to generate the results described in Barthel et.al. (2024) A non-intrusive machine learning framework for debiasing long-time coarse resolution climate simulations and quantifying rare events statistics. The archive includes raw and processed data from simulations of a 2  layer Quasi-Geostrophic model generated using an in-house solver, simulations of DOE's E3SM Atmosphere Model Version 2 (EAMv2), and ERA5 reanalysis data.  A detailed description of the model and simulations can be found in Barthel et. al. (2024).
DOI: 10.6084/m9.figshare.17004201.v1
title: Additional file 1 of CRPGCN: predicting circRNA-disease associations using graph convolutional network based on heterogeneous network

description: Additional file 1: Adjacency matrix A. The adjacency matrix A constructed from circR2Disease.
DOI: 10.6084/m9.figshare.12285440.v1
title: Additional file 7 of Transcriptome analysis of neural progenitor cells derived from Lowe syndrome induced pluripotent stem cells: identification of candidate genes for the neurodevelopmental and eye manifestations

description: Additional file 7: Table S3. Overlap of nominal DEGs with ASD, ID, SZ and eye disease gene datasets. Citations are included in the table.
DOI: 10.6084/m9.figshare.18585822.v1
title: Additional file 2 of Metabolic synthetic lethality by targeting NOP56 and mTOR in KRAS-mutant lung cancer

description: Additional file 2: Table S1. Cell lines used in this study. Table S2. Inhibitors used for synthetic lethal chemical screens. Table S3. Antibodies used in this study. Table S4.KRAS synthetic lethal (SL) genes.
DOI: 10.6084/m9.figshare.17004204
title: Additional file 2 of CRPGCN: predicting circRNA-disease associations using graph convolutional network based on heterogeneous network

description: Additional file 2: circRNA comprehensive similarity matrix.
DOI: 10.6084/m9.figshare.1284396
title: The E3 ligase APC/C-Cdh1 regulates MEF2A-dependent transcription by targeting SUMO-specific protease 2 for ubiquitination and degradation

description: Activity-dependent stimuli induced a calcineurin-mediated dephosphorylation of the transcriptional factor MEF2A at serine408 and promoted a switch from SUMOylation to acetylation at lysine403 which led to MEF2A transcriptional activation. We previously identified SENP2 is the de-SUMOylation enzyme for MEF2A and promotes MEF2A-dependent transcription. We report here a requirement for APC<sup>Cdh1</sup>-SENP2-MEF2A axis in the regulation of MEF2A transcriptional activation. APC<sup>Cdh1</sup> interacts with and targets SENP2 for ubiquitination and destruction in the cytoplasm by recognizing a conserved canonical D-box motif in SENP2. Moreover, Cdh1 regulates the transcriptional activity of MEF2A in a SENP2 dependent manner. Activity-dependent stimuli prevented APC<sup>Cdh1</sup>-induced SENP2 ubiquitination, promoted SENP2 nuclear accumulations, and caused MEF2A de-SUMOylation and MEF2A acetylation, leading to MEF2A transcriptional activation. Thus, our findings defined a post-transcriptional mechanism underlying activity-dependent stimuli-induced MEF2A transcriptional activation.
DOI: 10.6084/m9.figshare.18585676.v1
title: Additional file 3 of An integrative analysis of DNA methylation and transcriptome showed the dysfunction of MAPK pathway was involved in the damage of human chondrocyte induced by T-2 toxin

description: Additional file 3: Supplementary Table 2.
DOI: 10.6084/m9.figshare.23819974
title: Additional file 1 of Evaluation of altered starch mutants and identification of candidate genes responsible for starch variation in wheat

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.23819839.v1
title: Additional file 3 of M7G methylated core genes (METTL1 and WDR4) and associated RNA risk signatures are associated with prognosis and immune escape in HCC

description: Additional file 3.
DOI: 10.6084/m9.figshare.23819920.v1
title: Additional file 1 of SUMOylation of AnxA6 facilitates EGFR-PKCα complex formation to suppress epithelial cancer growth

description: Additional file 1.
DOI: 10.6084/m9.figshare.14391354
title: Additional file 19 of The reference genome and transcriptome of the limestone langur, Trachypithecus leucocephalus, reveal expansion of genes related to alkali tolerance

description: Additional file 19 : Table S14. The annotation of expanded gene families in the genome of T. leucocephalus.
DOI: 10.6084/m9.figshare.14391360.v1
title: Additional file 20 of The reference genome and transcriptome of the limestone langur, Trachypithecus leucocephalus, reveal expansion of genes related to alkali tolerance

description: Additional file 20: Table S15. The annotation of contracted gene families in the genome of T. leucocephalus.
DOI: 10.6084/m9.figshare.14391354.v1
title: Additional file 19 of The reference genome and transcriptome of the limestone langur, Trachypithecus leucocephalus, reveal expansion of genes related to alkali tolerance

description: Additional file 19 : Table S14. The annotation of expanded gene families in the genome of T. leucocephalus.
DOI: 10.6084/m9.figshare.25219082
title: Data for Keiser et al - Trait diversity and disease

description: This file contains the raw data for an experiment focusing on intraspecific variation, behavioral trait diversity, and disease dynamics. Different tabs of the excel file contain data for individual fly genotypes, population-level mortality, as well as two tabs with details on how ordination analyses were conducted to generate "diversity treatments" for fly populations. Manuscript is currently in review.
DOI: 10.6084/m9.figshare.25219082.v1
title: Data for Keiser et al - Trait diversity and disease

description: This file contains the raw data for an experiment focusing on intraspecific variation, behavioral trait diversity, and disease dynamics. Different tabs of the excel file contain data for individual fly genotypes, population-level mortality, as well as two tabs with details on how ordination analyses were conducted to generate "diversity treatments" for fly populations. Manuscript is currently in review.
DOI: 10.6084/m9.figshare.18585883
title: Additional file 2 of Diagnosis of schizophrenia with functional connectome data: a graph-based convolutional neural network approach

description: Additional file 2. Contrast maps.
DOI: 10.6084/m9.figshare.18585883.v1
title: Additional file 2 of Diagnosis of schizophrenia with functional connectome data: a graph-based convolutional neural network approach

description: Additional file 2. Contrast maps.
DOI: 10.6084/m9.figshare.18585879
title: Additional file 3 of First analyses of lysine succinylation proteome and overlap between succinylation and acetylation in Solenopsis invicta Buren (Hymenoptera: Formicidae)

description: Additional file 3: S2 Table. Lysine succinylated proteins containing diverse degrees of protein–protein interaction in Solenopsis invicta.
DOI: 10.6084/m9.figshare.18585768.v1
title: Additional file 3 of DENA: training an authentic neural network model using Nanopore sequencing data of Arabidopsis transcripts for detection and quantification of N6-methyladenosine on RNA

description: Additional file 3. List of datasets used in this study.
DOI: 10.6084/m9.figshare.18585876.v1
title: Additional file 2 of First analyses of lysine succinylation proteome and overlap between succinylation and acetylation in Solenopsis invicta Buren (Hymenoptera: Formicidae)

description: Additional file 2: S1 Table. Lysine succinylated proteins with various domains in Solenopsis invicta.
DOI: 10.6084/m9.figshare.18585879.v1
title: Additional file 3 of First analyses of lysine succinylation proteome and overlap between succinylation and acetylation in Solenopsis invicta Buren (Hymenoptera: Formicidae)

description: Additional file 3: S2 Table. Lysine succinylated proteins containing diverse degrees of protein–protein interaction in Solenopsis invicta.
DOI: 10.13145/bacdive9979.20220920.7
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9979.20221219.7.1
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9980.20220920.7
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9980.20221219.7.1
title: Myxococcus virescens Thaxter 1892 emend. Lang et al. 2008

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9981.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9981.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9982.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9982.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9983.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9983.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9984.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9984.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9985.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9985.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9986.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9986.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9987.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9987.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9988.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9988.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9989.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9989.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9990.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9990.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9991.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9991.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9992.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9992.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9993.20220920.7
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive9993.20221219.7.1
title: Myxococcus xanthus Beebe 1941

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.