cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.sf9wax
title: Occurrence Download

description: A dataset containing 18315945 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Year is 2024",
 "HasCoordinate is true",
 "Continent is Europe"
 ]
}

 The dataset includes 18315945 records from 200 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028194-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14268921
title: Database of probability maps supporting: "Quantifying ballistic projectile hazard of major explosions and paroxysms at Stromboli (Italy) with uncertainty assessment: 2. probability maps"

description: LEGEND: All the file names are composite acronyms describing the content. For more details see the related manuscript, "Bevilacqua, A., Neri, A., Landi, P., Del Carlo, P., Pompilio, M. (2024) Quantifying Ballistic Projectile Hazard of Major Explosions and Paroxysms at Stromboli (Italy) with Uncertainty Assessment: 2. Probability Maps".

 



Specifically, the files with:

"M1" are based on Model 1,

"M2" are based on Model 2,

"M3" are based on Model 3,

"Mmax" are based on the pointwise maximum of the three models.


 

 The files with: 

"avg" are mean values,

"p1" are the 5th percentile values,

"p2" are the 95th percentile values

of the ballistic fallout probability.

 

The files with:

"ME" are related to major explosions,

"PP" are related to the paroxysms, 

"CCvA" combine major explosions and paroxysms and assume the paroxysms are 7.3% of the total 

"CCvB" combine major explosions and paroxysms and assume the paroxysms are 12.1% of the total
DOI: 10.5281/zenodo.14268920
title: Database of probability maps supporting: "Quantifying ballistic projectile hazard of major explosions and paroxysms at Stromboli (Italy) with uncertainty assessment: 2. probability maps"

description: LEGEND: All the file names are composite acronyms describing the content. For more details see the related manuscript, "Bevilacqua, A., Neri, A., Landi, P., Del Carlo, P., Pompilio, M. (2024) Quantifying Ballistic Projectile Hazard of Major Explosions and Paroxysms at Stromboli (Italy) with Uncertainty Assessment: 2. Probability Maps".

 



Specifically, the files with:

"M1" are based on Model 1,

"M2" are based on Model 2,

"M3" are based on Model 3,

"Mmax" are based on the pointwise maximum of the three models.


 

 The files with: 

"avg" are mean values,

"p1" are the 5th percentile values,

"p2" are the 95th percentile values

of the ballistic fallout probability.

 

The files with:

"ME" are related to major explosions,

"PP" are related to the paroxysms, 

"CCvA" combine major explosions and paroxysms and assume the paroxysms are 7.3% of the total 

"CCvB" combine major explosions and paroxysms and assume the paroxysms are 12.1% of the total
DOI: 10.15468/dl.zy79my
title: Occurrence Download

description: A dataset containing 376 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cyphomyrus discorhynchus)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 376 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028237-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qugkxs
title: Occurrence Download

description: A dataset containing 14054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Symphyotrichum pilosum"
 ]
}

 The dataset includes 14054 records from 249 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028238-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/v2g-1vv-4m6
title: Eponides Montfort, 1808

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/x4m-fsz-bh8
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.pfjh2s
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Abyssocottus korotneffi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023414-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/bd6-sv2-6bx
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/rh0-x03-7an
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.hkba9f
title: Occurrence Download

description: A dataset containing 852 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Megachile frugalis",
 "Year 1000-2025"
 ]
}

 The dataset includes 852 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023413-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/9gf-avk-8w4
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/99s-k4a-p7w
title: Bryozoa

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j0a-dzq-pba
title: †Spiroclypeus margaritatus (Schlumberger, 1902)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/2dj-5l0-6a8
title: †Nummulites Lamarck, 1801

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/j5r-ra9-ggz
title: †Pullenoides Hofker, 1951

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lhb-8c9-cme
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/4z1-zp3-0dd
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/gfh-nze-he9
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.58ued2
title: Occurrence Download

description: A dataset containing 1342 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Opsiphanes fabricii, Staphylus tierra)"
 ]
}

 The dataset includes 1342 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023416-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3535/4gl-kwn-vrs
title: †Spiroclypeus Douvillé, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/95m-jhg-gt1
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ba1-v90-444
title: Canscora Lam.

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ekl-q3c-mtb
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/29x-vkh-j4t
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bby-9h9-8ey
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7zr-vt0-cbp
title: Amphistegina d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7m-k2p-7fl
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/jj2-w3v-tt1
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/73q-jhw-vtm
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/bby-lpc-9kz
title: Pycnodonte Fischer von Waldheim, 1835

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/1zw-7yv-1rg
title: Cnidaria

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/snd-x8r-smh
title: Bivalvia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/tfb-q3w-7wc
title: Bos taurus Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/a5x-2ae-yws
title: Homo sapiens Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/v8v-jla-q07
title: †Beisselina desmaresti (von Hagenow, 1851)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5xg-7fn-6ck
title: Bison C. H. Smith, 1827

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/crs-3h1-ywp
title: †Conulus castaneus (Brongniart, 1822)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/l8w-mpv-gbc
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/076-x0n-6se
title: Lagenidae Reuss, 1862

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/3m9-qn2-2vw
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.7274/29551130
title: Genomic and mathematical modeling approaches to understanding infectious disease dynamics

description: Mathematical modeling and genomic approaches are valuable tools for understanding infectious disease transmission dynamics. These methods facilitate fine-scale infectious disease surveillance and data-driven disease control strategies. For example, population genomic data from pathogens can reveal connectivity patterns, highlighting routes of transmission and pointing toward potential disease control measures. This dissertation aimed to evaluate seasonal spatial repellent (SR) use, investigate malaria transmission dynamics, and develop a broad pathogen screening assay utilizing modeling and genomic methods.
First, I employed an agent-based malaria transmission model to assess the impact of 40 seasonal SR deployment schedules on malaria transmission in a high-transmission setting in western Kenya. I determined that year round, maximum coverage SR use had the greatest impact on reducing Plasmodium falciparum infection numbers. I also discovered that well-timed six-month SR deployments had nearly as much impact on reducing infections and averted more infections per product, suggesting a resource-efficient SR deployment option.
Second, I investigated malaria transmission among indigenous groups in pre-elimination Bangladesh by amplicon sequencing 42 samples containing P. falciparum and P. vivax. Infections were highly clustered in two groups and showed high diversity with no population structure, indicating sustained transmission throughout the region.
Third, I assessed malaria transmission in high-transmission Ethiopia by screening 661 clinical samples and amplicon sequencing 198 samples containing P. falciparum. I discovered that infections were diverse and did not cluster by site, although there was moderate population structure. Decreasing qPCR positivity rate, polyclonality, and parasite diversity between timepoints indicated that transmission intensity may have decreased over time in one site. 
Fourth, I applied amplicon sequencing methods to develop a novel broadly targeted next-generation sequencing assay and used it to screen 110 clinical samples from Ghana for a variety of pathogens. I detected a variety of pathogens: bacteria, a virus, and eukaryotic parasites. I also identified challenges to be addressed through further assay optimization.
In conclusion, my work contributes to our understanding of malaria transmission and control measures and produced a novel assay for broad pathogen diagnosis. My findings can support the development of improved infectious disease surveillance and control strategies.
DOI: 10.7274/29551130.v1
title: Genomic and mathematical modeling approaches to understanding infectious disease dynamics

description: Mathematical modeling and genomic approaches are valuable tools for understanding infectious disease transmission dynamics. These methods facilitate fine-scale infectious disease surveillance and data-driven disease control strategies. For example, population genomic data from pathogens can reveal connectivity patterns, highlighting routes of transmission and pointing toward potential disease control measures. This dissertation aimed to evaluate seasonal spatial repellent (SR) use, investigate malaria transmission dynamics, and develop a broad pathogen screening assay utilizing modeling and genomic methods.
First, I employed an agent-based malaria transmission model to assess the impact of 40 seasonal SR deployment schedules on malaria transmission in a high-transmission setting in western Kenya. I determined that year round, maximum coverage SR use had the greatest impact on reducing Plasmodium falciparum infection numbers. I also discovered that well-timed six-month SR deployments had nearly as much impact on reducing infections and averted more infections per product, suggesting a resource-efficient SR deployment option.
Second, I investigated malaria transmission among indigenous groups in pre-elimination Bangladesh by amplicon sequencing 42 samples containing P. falciparum and P. vivax. Infections were highly clustered in two groups and showed high diversity with no population structure, indicating sustained transmission throughout the region.
Third, I assessed malaria transmission in high-transmission Ethiopia by screening 661 clinical samples and amplicon sequencing 198 samples containing P. falciparum. I discovered that infections were diverse and did not cluster by site, although there was moderate population structure. Decreasing qPCR positivity rate, polyclonality, and parasite diversity between timepoints indicated that transmission intensity may have decreased over time in one site. 
Fourth, I applied amplicon sequencing methods to develop a novel broadly targeted next-generation sequencing assay and used it to screen 110 clinical samples from Ghana for a variety of pathogens. I detected a variety of pathogens: bacteria, a virus, and eukaryotic parasites. I also identified challenges to be addressed through further assay optimization.
In conclusion, my work contributes to our understanding of malaria transmission and control measures and produced a novel assay for broad pathogen diagnosis. My findings can support the development of improved infectious disease surveillance and control strategies.
DOI: 10.3535/7ff-kvr-55c
title: †Palorbitolina lenticularis (Blumenbach, 1805)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87b-tkj-67a
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h33-kmx-yk3
title: Pristiophorus

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/lfj-4p3-e8j
title: Cetacea Brisson, 1762

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dv2-grf-6tx
title: Mammalia Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/yd3-e96-nv4
title: Sus scrofa Linnaeus, 1758

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3886/e243988
title: NNDSS - Table II. Lyme disease to Meningococcal

description: NNDSS - Table II. Lyme disease to Meningococcal - 2016. In this Table, provisional* cases of selected† notifiable diseases (≥1,000 cases reported during the preceding year), and selected low frequency diseases are displayed. The Table includes total number of cases reported in the United States, by region and by states, in accordance with the current method of displaying MMWR data. Data on United States exclude counts from US territories.

Note:
These are provisional cases of selected national notifiable diseases, from the National Notifiable Diseases Surveillance System (NNDSS). NNDSS data reported by the 50 states, New York City, the District of Columbia, and the U.S. territories are collated and published weekly as numbered tables printed in the back of the Morbidity and Mortality Weekly Report (MMWR). Cases reported by state health departments to CDC for weekly publication are provisional because of ongoing revision of information and delayed reporting.

Case counts in this table are presented as they were published in the MMWR issues. Therefore, numbers listed in later MMWR weeks may reflect changes made to these counts as additional information becomes available.

Footnotes:
C.N.M.I.: Commonwealth of Northern Mariana Islands.
U: Unavailable. -: No reported cases. N: Not reportable. NN: Not Nationally Notifiable. NP: Nationally notifiable but not published. Cum: Cumulative year-to-date counts. Med: Median. Max: Maximum.

* Case counts for reporting year 2016 are provisional and subject to change. For further information on interpretation of these data, see http://wwwn.cdc.gov/nndss/document/ ProvisionalNationaNotifiableDiseasesSurveillanceData20100927.pdf. Data for TB are displayed in Table IV, which appears quarterly.
† Three low incidence conditions, rubella, rubella congenital, and tetanus, are in Table II to facilitate case count verification with reporting jurisdictions.
§ Data for meningococcal disease, invasive caused by serogroups ACWY; serogroup B; other serogroup; and unknown serogroup are available in Table I.
Read less
description: (Downloaded 1/12/2026)
DOI: 10.15468/dl.gjdsr8
title: Occurrence Download

description: A dataset containing 1938826 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Malaysia",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves",
 "Year 2014-2024"
 ]
}

 The dataset includes 1938826 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002330-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.48420/21758444
title: Quantitative phase analysis of powder X-ray diffraction patterns of Ti3C2Tz MXene synthesis products

description: Rietveld refinement was performed on powder diffraction patterns of a triphasic system, where one phase constitutes an internal standard, to be able to quantify the proportion of product (Ti<sub>3</sub>C<sub>2</sub> MXene) and reactant (Ti<sub>3</sub>AlC<sub>2</sub> MAX phase) present after a synthesis trial. Synthesis trial parameters are determined in a Design of Experiments (DoE) screening design.<br>See file 2022-12-06-Quantitative-Phase-Analysis-QPA-of-MXene-synthesis-product-PXRD-patterns.pdf for full dataset details.
DOI: 10.15468/dl.ejauy9
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Impatiens brachycentra Kar. & Kir."
 ]
}

 The dataset includes 50 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000282-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmctan
title: Occurrence Download

description: A dataset containing 10164 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-71.51811 -33.06501,-71.47519 -33.06501,-71.47519 -33.02931,-71.51811 -33.02931,-71.51811 -33.06501))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 10164 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000280-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zj3gq5
title: Occurrence Download

description: A dataset containing 2604 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Schwarziana Moure, 1943"
 ]
}

 The dataset includes 2604 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002156-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v7r7f5
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Cryptobranchus alleganiensis bishopi Grobman, 1943)"
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001927-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxhf55
title: Occurrence Download

description: A dataset containing 2190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Trachymela sloanei"
 ]
}

 The dataset includes 2190 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028808-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b2crsz
title: Occurrence Download

description: A dataset containing 9315 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tringa nebularia",
 "HasCoordinate is true",
 "Country is Türkiye"
 ]
}

 The dataset includes 9315 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028809-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.