cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12210383
title: Substitution of ractopamine by safflower or coconut oil as an additive in finishing pig diets

description: ABSTRACT: The objective of this study was to explore the substitution of ractopamine by coconut or safflower oil in finishing pig diets. The study included 24 crossbred barrows weighing 78.00 ± 8.76 kg distributed in a randomized block design with four treatments and six replicates composed of: basal ration (BR), BR + 10 ppm ractopamine, BR + four 1 g capsules of safflower oil, and BR + four 1 g capsules of coconut oil. Performance evaluation showed that safflower oil, ractopamine, and coconut oil supplementation had a significant effect (P &lt; 0.05) on weight gain and feed conversion. Carcass-related variables were also affected by the treatments (P &lt; 0.05), with fat thickness 3 (FT3) reduced by the use of safflower oil, ractopamine, and coconut oil. Rib eye area was positively affected (P &lt; 0.05) by diet, with ractopamine, coconut oil, and safflower oil supplementation treatments showing higher values than control diet treatment. The diets also affected fatty acid profiles (P &lt; 0.05), with decreased myristic acid content in animals supplemented with ractopamine and safflower oil and increased deposition of palmitoleic and oleic acids in animals supplemented with coconut oil and safflower oil, respectively. Results suggested that both safflower oil and coconut oil can be used as substitutes for ractopamine.
DOI: 10.6084/m9.figshare.12210371
title: Physicochemical, aromatic and sensory properties of the ‘Riesling Italico’ wines fermented with Saccharomyces and non-Saccharomyces yeasts

description: ABSTRACT: The sensory quality of wines is affected by the compounds produced by the action of the yeasts used in alcoholic fermentation. This work aimed at assessing the physicochemical, aromatic and sensory properties of the ‘Riesling Italico’ white wines produced by using the Saccharomyces and non-Saccharomyces yeasts. The yeasts S. cerevisiae, S. cerevisiae cerevisiae, S. bayanus, Torulaspora delbrueckii and Metschnikowia pulcherrima were inoculated individually into the must. For 10 days, the alcohol was left to ferment in 7 L carboys in triplicate, at 15º C temperature. The standard physicochemical analyses were done and the quality of the wines was determined. The volatile compounds were identified and quantitative descriptive sensory analyses were performed. All the yeasts produced wines with the characteristic alcohol, volatile acidity and residual sugar content as stipulated by the Brazilian legislation. The T. delbrueckii yeast produced high-content phenylethyl acetate, isoamyl acetate and ethyl decanoate wines, of superior olfactory quality and sensory rating.
DOI: 10.6084/m9.figshare.12210383.v1
title: Substitution of ractopamine by safflower or coconut oil as an additive in finishing pig diets

description: ABSTRACT: The objective of this study was to explore the substitution of ractopamine by coconut or safflower oil in finishing pig diets. The study included 24 crossbred barrows weighing 78.00 ± 8.76 kg distributed in a randomized block design with four treatments and six replicates composed of: basal ration (BR), BR + 10 ppm ractopamine, BR + four 1 g capsules of safflower oil, and BR + four 1 g capsules of coconut oil. Performance evaluation showed that safflower oil, ractopamine, and coconut oil supplementation had a significant effect (P &lt; 0.05) on weight gain and feed conversion. Carcass-related variables were also affected by the treatments (P &lt; 0.05), with fat thickness 3 (FT3) reduced by the use of safflower oil, ractopamine, and coconut oil. Rib eye area was positively affected (P &lt; 0.05) by diet, with ractopamine, coconut oil, and safflower oil supplementation treatments showing higher values than control diet treatment. The diets also affected fatty acid profiles (P &lt; 0.05), with decreased myristic acid content in animals supplemented with ractopamine and safflower oil and increased deposition of palmitoleic and oleic acids in animals supplemented with coconut oil and safflower oil, respectively. Results suggested that both safflower oil and coconut oil can be used as substitutes for ractopamine.
DOI: 10.6084/m9.figshare.12210365
title: Refrigeration and modified atmosphere to the conservation of ‘Malasia’ Star fruit

description: ABSTRACT: Despite the fact that cold storage and modified atmosphere techniques have already been studied for fresh cut Star fruit, little has been done considering the whole fruit. Besides that, each cultivar has its peculiarities, so the efficiency of combined postharvest treatments should be studied. The objective of this study was to evaluate the effect of polyvinyl chloride (PVC), 8.5 µm thick and low-density polyethylene (LDPE), 33 µm thick associated with cold storage (10 ± 1 °C and 5 ± 1 °C / 85 ± 5% RH) on the conservation of ‘Malasia’ Star fruit. Storage at 25 oC maintained Star fruit overall quality, regardless of the film type, up to four days. The weight loss was higher in fruit packed with PVC, but this fact was not noticed by the sensory analysis. The storage in 5 and 10 oC did not caused chilling injury but fruit presented retention of yellow color development and firmness reduction; these aspects were positively assessed by the sensory analysis. The film type did not influence the conservation of the fruit. The storage at 5 and 10 °C, regardless of the package film, prolonged ‘Malasia’ star fruit shelf life up to 16 days, followed by two days at 25 °C.
DOI: 10.6084/m9.figshare.12210368
title: Hematology and serum biochemistry of broilers at the initial and growth stages submitted to different levels of digestible sulfur amino acids

description: ABSTRACT: The objective of this study was to evaluate the effect of digestible methionine and cystine (Met + Cys) levels on the hematological and serum biochemical parameters of broiler chickens during the initial and growth stages. For this, 1,800 male chicks of the Coob 500 strain were used, with 900 chicks in the initial phase (1 to 21 days old) and 900 chicks in the growth phase (22 to 42 days old), distributed in a completely randomized design of five treatments with six replicates of 30 birds. The treatments consisted of 0.545, 0.616, 0.711, 0.782, and 0.853%; and 0.514, 0.571, 0.647, 0.704, and 0.761% digestible Met + Cys for “1 to 21” and “22 to 42” days of breeding, respectively. Results showed that digestible Met + Cys levels in broiler feed altered some hematological parameters (erythrocyte, hematocrit hemoglobin, total leukocytes, heterophile: lymphocyte) and serum biochemistry (uric acid, PST, total LDL, and TG). The digestible Met + Cys levels in the diet of broilers affected the hematological parameters and serum biochemistry, especially at higher levels. From the inclusion level 0.761 of Met + Cist in the broiler diet, red blood cells, hemoglobin and hematocrit changes begin to appear.
DOI: 10.6084/m9.figshare.12210365.v1
title: Refrigeration and modified atmosphere to the conservation of ‘Malasia’ Star fruit

description: ABSTRACT: Despite the fact that cold storage and modified atmosphere techniques have already been studied for fresh cut Star fruit, little has been done considering the whole fruit. Besides that, each cultivar has its peculiarities, so the efficiency of combined postharvest treatments should be studied. The objective of this study was to evaluate the effect of polyvinyl chloride (PVC), 8.5 µm thick and low-density polyethylene (LDPE), 33 µm thick associated with cold storage (10 ± 1 °C and 5 ± 1 °C / 85 ± 5% RH) on the conservation of ‘Malasia’ Star fruit. Storage at 25 oC maintained Star fruit overall quality, regardless of the film type, up to four days. The weight loss was higher in fruit packed with PVC, but this fact was not noticed by the sensory analysis. The storage in 5 and 10 oC did not caused chilling injury but fruit presented retention of yellow color development and firmness reduction; these aspects were positively assessed by the sensory analysis. The film type did not influence the conservation of the fruit. The storage at 5 and 10 °C, regardless of the package film, prolonged ‘Malasia’ star fruit shelf life up to 16 days, followed by two days at 25 °C.
DOI: 10.6084/m9.figshare.12210368.v1
title: Hematology and serum biochemistry of broilers at the initial and growth stages submitted to different levels of digestible sulfur amino acids

description: ABSTRACT: The objective of this study was to evaluate the effect of digestible methionine and cystine (Met + Cys) levels on the hematological and serum biochemical parameters of broiler chickens during the initial and growth stages. For this, 1,800 male chicks of the Coob 500 strain were used, with 900 chicks in the initial phase (1 to 21 days old) and 900 chicks in the growth phase (22 to 42 days old), distributed in a completely randomized design of five treatments with six replicates of 30 birds. The treatments consisted of 0.545, 0.616, 0.711, 0.782, and 0.853%; and 0.514, 0.571, 0.647, 0.704, and 0.761% digestible Met + Cys for “1 to 21” and “22 to 42” days of breeding, respectively. Results showed that digestible Met + Cys levels in broiler feed altered some hematological parameters (erythrocyte, hematocrit hemoglobin, total leukocytes, heterophile: lymphocyte) and serum biochemistry (uric acid, PST, total LDL, and TG). The digestible Met + Cys levels in the diet of broilers affected the hematological parameters and serum biochemistry, especially at higher levels. From the inclusion level 0.761 of Met + Cist in the broiler diet, red blood cells, hemoglobin and hematocrit changes begin to appear.
DOI: 10.6084/m9.figshare.12210371.v1
title: Physicochemical, aromatic and sensory properties of the ‘Riesling Italico’ wines fermented with Saccharomyces and non-Saccharomyces yeasts

description: ABSTRACT: The sensory quality of wines is affected by the compounds produced by the action of the yeasts used in alcoholic fermentation. This work aimed at assessing the physicochemical, aromatic and sensory properties of the ‘Riesling Italico’ white wines produced by using the Saccharomyces and non-Saccharomyces yeasts. The yeasts S. cerevisiae, S. cerevisiae cerevisiae, S. bayanus, Torulaspora delbrueckii and Metschnikowia pulcherrima were inoculated individually into the must. For 10 days, the alcohol was left to ferment in 7 L carboys in triplicate, at 15º C temperature. The standard physicochemical analyses were done and the quality of the wines was determined. The volatile compounds were identified and quantitative descriptive sensory analyses were performed. All the yeasts produced wines with the characteristic alcohol, volatile acidity and residual sugar content as stipulated by the Brazilian legislation. The T. delbrueckii yeast produced high-content phenylethyl acetate, isoamyl acetate and ethyl decanoate wines, of superior olfactory quality and sensory rating.
DOI: 10.6084/m9.figshare.12210341
title: Lifestyle factors, direct and indirect costs for a Brazilian airline company

description: OBJECTIVE To analyze lifestyle risk factors related to direct healthcare costs and the indirect costs due to sick leave among workers of an airline company in Brazil. METHODS In this longitudinal 12-month study of 2,201 employees of a Brazilian airline company, the costs of sick leave and healthcare were the primary outcomes of interest. Information on the independent variables, such as gender, age, educational level, type of work, stress, and lifestyle-related factors (body mass index, physical activity, and smoking), was collected using a questionnaire on enrolment in the study. Data on sick leave days were available from the company register, and data on healthcare costs were obtained from insurance records. Multivariate linear regression analysis was used to investigate the association between direct and indirect healthcare costs with sociodemographic, work, and lifestyle-related factors. RESULTS Over the 12-month study period, the average direct healthcare expenditure per worker was US$505.00 and the average indirect cost because of sick leave was US$249.00 per worker. Direct costs were more than twice the indirect costs and both were higher in women. Body mass index was a determinant of direct costs and smoking was a determinant of indirect costs. CONCLUSIONS Obesity and smoking among workers in a Brazilian airline company were associated with increased health costs. Therefore, promoting a healthy diet, physical activity, and anti-tobacco campaigns are important targets for health promotion in this study population.
DOI: 10.6084/m9.figshare.12210335
title: Nutritional value of gluten-free rice and bean based cake mix

description: ABSTRACT: Gluten-free foods are a growing trend in the domestic and international markets, contributing to health and wellness, especially the celiac public. The objective of this study was to create a new option of gluten-free food by replacing wheat flour by rice grit flour, cornstarch, and extruded split bean flour, and to aggregate value to low cost industrial byproducts. A new food product was developed and its components analyzed for their nutritional characteristics and changes during baking. The baked cakes can be a source of protein, had a good starch and protein digestibility, and low antinutritional factors, notably tannins. Incorporation of an extruded bean flour in a gluten-free cake mix improves protein digestibility, total dietary fiber, and raises ash, iron, and zinc contents.
DOI: 10.6084/m9.figshare.12210341.v1
title: Lifestyle factors, direct and indirect costs for a Brazilian airline company

description: OBJECTIVE To analyze lifestyle risk factors related to direct healthcare costs and the indirect costs due to sick leave among workers of an airline company in Brazil. METHODS In this longitudinal 12-month study of 2,201 employees of a Brazilian airline company, the costs of sick leave and healthcare were the primary outcomes of interest. Information on the independent variables, such as gender, age, educational level, type of work, stress, and lifestyle-related factors (body mass index, physical activity, and smoking), was collected using a questionnaire on enrolment in the study. Data on sick leave days were available from the company register, and data on healthcare costs were obtained from insurance records. Multivariate linear regression analysis was used to investigate the association between direct and indirect healthcare costs with sociodemographic, work, and lifestyle-related factors. RESULTS Over the 12-month study period, the average direct healthcare expenditure per worker was US$505.00 and the average indirect cost because of sick leave was US$249.00 per worker. Direct costs were more than twice the indirect costs and both were higher in women. Body mass index was a determinant of direct costs and smoking was a determinant of indirect costs. CONCLUSIONS Obesity and smoking among workers in a Brazilian airline company were associated with increased health costs. Therefore, promoting a healthy diet, physical activity, and anti-tobacco campaigns are important targets for health promotion in this study population.
DOI: 10.6084/m9.figshare.12210335.v1
title: Nutritional value of gluten-free rice and bean based cake mix

description: ABSTRACT: Gluten-free foods are a growing trend in the domestic and international markets, contributing to health and wellness, especially the celiac public. The objective of this study was to create a new option of gluten-free food by replacing wheat flour by rice grit flour, cornstarch, and extruded split bean flour, and to aggregate value to low cost industrial byproducts. A new food product was developed and its components analyzed for their nutritional characteristics and changes during baking. The baked cakes can be a source of protein, had a good starch and protein digestibility, and low antinutritional factors, notably tannins. Incorporation of an extruded bean flour in a gluten-free cake mix improves protein digestibility, total dietary fiber, and raises ash, iron, and zinc contents.
DOI: 10.6084/m9.figshare.12210317
title: RNASEQ

description: RNAseq of crlf1 overexpressing PTC cells
DOI: 10.23641/asha.12210311
title: Bilingualism and processing speed (Park et al., 2020)

description: <b>Purpose: </b>The aim of the current study was to investigate whether dual language experience modulates processing speed in typically developing (TD) children and in children with developmental language disorder (DLD). We also examined whether processing speed predicted vocabulary and sentence-level abilities in receptive and expressive modalities.<b>Method: </b>We examined processing speed in monolingual and bilingual school-age children (ages 8–12 years) with and without DLD. TD children (35 monolinguals, 24 bilinguals) and children with DLD (17 monolinguals, 10 bilinguals) completed a visual choice reaction time task. The Clinical Evaluation of Language Fundamentals, the Peabody Picture Vocabulary Test, and the Expressive Vocabulary Test were used as language measures.<b>Results: </b>The children with DLD exhibited slower response times relative to TD children. Response time was not modified by bilingual experience, neither in children with typical development nor children with DLD. Also, we found that faster processing speed was related to higher language abilities, but this relationship was not significant when socioeconomic status was controlled for. The magnitude of the association did not differ between the monolingual and bilingual groups across the language measures.<b>Conclusions: </b>Slower processing speed is related to lower language abilities in children. Processing speed is minimally influenced by dual language experience, at least within this age range.<b><br></b><b>Supplemental Material S1.</b> Generalized linear mixed-effects models for accuracy on the visual choice reaction time task. <br>Park, J. S., Miller, C. A., Sanjeevan, T., van Hell, J. G., Weiss, D. J., & Mainela-Arnold, E. (2020). Bilingualism and processing speed in typically developing children and children with developmental language disorder. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2020_JSLHR-19-00403
DOI: 10.6084/m9.figshare.12210314
title: mass.zip

description: CRLF1-MYH9 interaction
DOI: 10.23641/asha.12210311.v1
title: Bilingualism and processing speed (Park et al., 2020)

description: <b>Purpose: </b>The aim of the current study was to investigate whether dual language experience modulates processing speed in typically developing (TD) children and in children with developmental language disorder (DLD). We also examined whether processing speed predicted vocabulary and sentence-level abilities in receptive and expressive modalities.<b>Method: </b>We examined processing speed in monolingual and bilingual school-age children (ages 8–12 years) with and without DLD. TD children (35 monolinguals, 24 bilinguals) and children with DLD (17 monolinguals, 10 bilinguals) completed a visual choice reaction time task. The Clinical Evaluation of Language Fundamentals, the Peabody Picture Vocabulary Test, and the Expressive Vocabulary Test were used as language measures.<b>Results: </b>The children with DLD exhibited slower response times relative to TD children. Response time was not modified by bilingual experience, neither in children with typical development nor children with DLD. Also, we found that faster processing speed was related to higher language abilities, but this relationship was not significant when socioeconomic status was controlled for. The magnitude of the association did not differ between the monolingual and bilingual groups across the language measures.<b>Conclusions: </b>Slower processing speed is related to lower language abilities in children. Processing speed is minimally influenced by dual language experience, at least within this age range.<b><br></b><b>Supplemental Material S1.</b> Generalized linear mixed-effects models for accuracy on the visual choice reaction time task. <br>Park, J. S., Miller, C. A., Sanjeevan, T., van Hell, J. G., Weiss, D. J., & Mainela-Arnold, E. (2020). Bilingualism and processing speed in typically developing children and children with developmental language disorder. <i>Journal of Speech, Language, and Hearing Research.</i> Advance online publication. https://doi.org/10.1044/2020_JSLHR-19-00403
DOI: 10.6084/m9.figshare.12210314.v1
title: mass.zip

description: CRLF1-MYH9 interaction
DOI: 10.6084/m9.figshare.12210317.v1
title: RNASEQ

description: CRLF1-MYH9 interaction
DOI: 10.6084/m9.figshare.12210317.v3
title: RNASEQ

description: RNAseq of crlf1 overexpressing PTC cells
DOI: 10.6084/m9.figshare.12210317.v2
title: RNASEQ

description: RNAseq of crlf1 overexpressing PTC cells
DOI: 10.6084/m9.figshare.12210254
title: Single cell differential isoform expression

description: Tar.gz file containing four .Rds files (to be loaded using R). The objects are lists, containing splatter paramaters (the input for splatter simulations), simulated datasets, and p-values for each gene of the simulated dataset using various differential expression software, both at the level of isoforms and genes<br>
DOI: 10.6084/m9.figshare.12210266
title: ImReP Large Data Files

description: Large data files from our study not able to be uploaded to the GitHub here (https://github.com/Mangul-Lab-USC/ImReP_publication)<br>Full Publication can be in Nature Communications here (https://doi.org/10.1038/s41467-020-16857-7)<br>Figure5a_data.csv: Data file for a plot in our publication with pairwise sample data. For each sample pair we calculated the Sørensen-Dice similarity index. Each pair is labeled by the immunoglobulin chain, as well as whether the sample came from one individual, or multiple individuals.<br>source-data.zip: Compressed file containing all of the csv files required to plot the figures in our paper.
DOI: 10.6084/m9.figshare.12210254.v1
title: Single cell differential isoform expression

description: Tar.gz file containing four .Rds files (to be loaded using R). The objects are lists, containing splatter paramaters (the input for splatter simulations), simulated datasets, and p-values for each gene of the simulated dataset using various differential expression software, both at the level of isoforms and genes<br>
DOI: 10.6084/m9.figshare.12210266.v1
title: ImReP Large Data Files

description: Large data files from our study not able to be uploaded to the GitHub here (https://github.com/Mangul-Lab-USC/ImReP_publication)<br>Full Publication can be in Nature Communications here (https://doi.org/10.1038/s41467-020-16857-7)<br>Figure5a_data.csv: Data file for a plot in our publication with pairwise sample data. For each sample pair we calculated the Sørensen-Dice similarity index. Each pair is labeled by the immunoglobulin chain, as well as whether the sample came from one individual, or multiple individuals.<br>source-data.zip: Compressed file containing all of the csv files required to plot the figures in our paper.
DOI: 10.6084/m9.figshare.12210158
title: Metadata record for: Serial scanning electron microscopy of anti-PKHD1L1 immuno-gold labeled mouse hair cell stereocilia bundles

description: This dataset contains key characteristics about the data described in the Data Descriptor Serial scanning electron microscopy of anti-PKHD1L1 immuno-gold labeled mouse hair cell stereocilia bundles. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.12210158.v1
title: Metadata record for: Serial scanning electron microscopy of anti-PKHD1L1 immuno-gold labeled mouse hair cell stereocilia bundles

description: This dataset contains key characteristics about the data described in the Data Descriptor Serial scanning electron microscopy of anti-PKHD1L1 immuno-gold labeled mouse hair cell stereocilia bundles. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format