cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18414819
title: Plant physiological and biochemical responses to nickel–cobalt–manganese (NCM) exposure under non-acidified and acidified conditions

description: This dataset contains raw and processed data obtained from controlled plant bioassays assessing early crop responses to mixed-metal exposure under neutral and acidified conditions. Experiments were conducted using four crop species: maize (Zea mays), wheat (Triticum aestivum), canola (Brassica napus), and Chinese cabbage (Brassica rapa subsp. pekinensis).

Two experimental regimes were applied: (i) a non-acidified concentration gradient (0–500 mg·L⁻¹) and (ii) an acidified treatment scenario including an acid control and combined metal–acid treatments (200–1000 mg·L⁻¹). The dataset includes measurements of germination indices, seedling growth traits, tolerance indices, fresh and dry biomass, and photosynthetic pigment contents. Oxidative stress indicators and antioxidant enzyme activities measured under non-acidified conditions are also provided.

All measurements were obtained from replicated experiments (n = 3) following standardized physiological and biochemical protocols. The dataset includes raw replicate values and processed summary statistics (mean ± standard error) used for statistical analyses and figure preparation in the associated manuscript.
DOI: 10.5281/zenodo.18345722
title: Plant physiological and biochemical responses to nickel–cobalt–manganese (NCM) exposure under non-acidified and acidified conditions

description: This dataset contains raw and processed data obtained from controlled plant bioassays assessing early crop responses to mixed-metal exposure under neutral and acidified conditions. Experiments were conducted using four crop species: maize (Zea mays), wheat (Triticum aestivum), canola (Brassica napus), and Chinese cabbage (Brassica rapa subsp. pekinensis).

Two experimental regimes were applied: (i) a non-acidified concentration gradient (0–500 mg·L⁻¹) and (ii) an acidified treatment scenario including an acid control and combined metal–acid treatments (200–1000 mg·L⁻¹). The dataset includes measurements of germination indices, seedling growth traits, tolerance indices, fresh and dry biomass, and photosynthetic pigment contents. Oxidative stress indicators and antioxidant enzyme activities measured under non-acidified conditions are also provided.

All measurements were obtained from replicated experiments (n = 3) following standardized physiological and biochemical protocols. The dataset includes raw replicate values and processed summary statistics (mean ± standard error) used for statistical analyses and figure preparation in the associated manuscript.
DOI: 10.21227/9p2w-xw26
title: "Superpixel-Driven Graph Adaptive Transformer for Hyperspectral Target Detection"

description: "The San Diego Airport dataset is the first experimental dataset used to validate the proposed method. It was acquired by the airborne visible\/infrared imaging spectrometer (AVIRIS) over the San Diego Airport area in California, USA. The original hyperspectral data cover a wavelength range of 370\\text{-}2510 nm, consisting of 224 spectral bands, with a spatial resolution of approximately 3.5 meters. During preprocessing, invalid bands were removed, resulting in 189 bands retained for experimental analysis. In the experiments, multiple aircraft within the scenes were selected as detection targets, while the remaining regions were treated as background. Notably, the airport area contains a large number of metallic structures, such as rooftops and runways. The spectral similarity between these background pixels and aircraft targets often leads to significant spectral confusion, causing false detections and a higher false alarm rate. "
DOI: 10.25824/redu/xkebhm
title: Adverbs in imperative sentences: a comparative dataset from Angolan, Brazilian and Mozambican portuguese

description: The data reported herein, forming part of the FAPESP-funded project (23/16142-0) entitled "Diagnostics for Adverbs: (Micro)variation and Cartography", constitute a systematic test of the entire universal adverbial hierarchy posited by Cinque (1999) within imperative sentences across three varieties of Portuguese: namely, Angolan, Brazilian, and Mozambican.
DOI: 10.57903/uj/ggnk2a
title: 3D model project of Nea Paphos city in Late Roman (Phase 4)

description: 3D models generated using procedural modeling were perform based on architectural studies of housing remains in Nea Paphos and its development. So colled static models were genarated based on architectural and archaeological studies made during Polish Archaeological Mission in Nea paphos and MAP project directed by Ewdoksia Papuci-Wladyka.
&lt;br&gt;&lt;br&gt;
Late Roman (4rd-5th C.E) developments include: House of Aion, 2nd phase of Theseus house new street between houses, Domus in Garnison Camp, late antiquity basilicas
&lt;br&gt;&lt;br&gt;
The scene in TwinMotion were generated using imported geometry of 3D models generated using procedural rules and BIM software
DOI: 10.15468/dl.qsd997
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-20.14723 32.74421,16.14723 32.74421,16.14723 47.25579,-20.14723 47.25579,-20.14723 32.74421))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Suboestophora hispanica"
 ]
}

 The dataset includes 39 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005910-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yf4bv
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sphaerobambos",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005911-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4jqd4
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Spenceria ramalana",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 419 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005912-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/jhwrxs6gs8
title: Three-frame-sequence synthetic PIV (TFS-S-PIV) dataset 2

description: Three-frame-sequence synthetic PIV (TFS-S-PIV) dataset for deep learning models for PIV tasks training, each flow type includes two subfolders, png and flo, the sequence pair is {flow_type}_{%05d}_flow_img1.png, {flow_type}_{%05d}_flow_img2.png, and {flow_type}_{%05d}_flow_img3.png to {flow_type}_{%05d}_flow.flo and {flow_type}_{%05d+1}_flow.flo
DOI: 10.17632/jhwrxs6gs8.1
title: Three-frame-sequence synthetic PIV (TFS-S-PIV) dataset 2

description: Three-frame-sequence synthetic PIV (TFS-S-PIV) dataset for deep learning models for PIV tasks training, each flow type includes two subfolders, png and flo, the sequence pair is {flow_type}_{%05d}_flow_img1.png, {flow_type}_{%05d}_flow_img2.png, and {flow_type}_{%05d}_flow_img3.png to {flow_type}_{%05d}_flow.flo and {flow_type}_{%05d+1}_flow.flo
DOI: 10.23719/1517594
title: Reported photolysis products (DB-J-ENV and DB-EFSA-ENV)

description: The dataset file contains a list of parent compound names and standardized SMILES strings for both the parent compounds and reported transformation products.  The data in the DB-J-ENV tab was compiled from journal publications, and the data in the DB-EFSA-ENV tab was compiled from European Food Safety Authority (EFSA) reports.
DOI: 10.23719/1517601
title: Evaluation of polycyclic aromatic hydrocarbons in fine particulate matter censoring-related bias.csv

description: The case study data are selected from an EPA study using cookstove combustion experiments to measure polycyclic aromatic hydrocarbon (PAH) concentrations in particulate matter (PM) and were determined using gas chromatography-mass spectrometry (GC-MS) (Shen et al. 2017). Chromatograms of particle emissions reported in Shen et al. (2017) were reanalyzed for the case study to quantify previously censored measurements where the signal-to-noise ratio was >1.
DOI: 10.23719/1517796
title: Supply Chain Greenhouse Gas Emission Factors for US Industries and Commodities

description: Many organizations quantify greenhouse emissions in their value chain. Emissions from purchased goods and services and capital goods, referred to as Scope 3 emissions in the Greenhouse Gas Protocol Scope 3 Accounting and Reporting Standard, represent a significant emissions source for many organizations. To assist in quantifying these emissions, we have developed a comprehensive set of supply chain emission factors covering all categories of goods and services in the US economy. These factors are intended for quantifying emissions from purchased goods and services using the spend-based method defined in the Greenhouse Gas Protocol Technical Guidance for Calculating Scope 3 Emissions. The factors were prepared using USEEIO models, which are a life cycle models of goods and services in the US economy.

The supply chain emission factors are presented in units of kilogram emissions per US dollar of purchases for a category of goods and services with a defined life cycle scope. Sets of factors covering all sectors of the economy are provided for years from 2010 to 2016 with two levels of sector aggregation. The factors are provided for both industries and commodities, where commodities are equivalent to a category of good or service, and industries are producers of one or more commodities. A set of five data quality scores covering data reliability, temporal, geographical and technological correlation and completeness of data collection is provided along with each factor.

The factors presented are as follows:
1. Supply Chain Emission Factors without Margins: emissions associated with cradle to factory gate
2. Margins of Supply Chain Emission Factors: emissions associated with factory gate to shelf, which includes emissions from transportation, wholesale and retail as well as adjustments for price markups
3. Supply Chain Emission Factors with Margins: emissions associated with cradle to shelf (equal to the sum of the above two factors)

End users of products will likely find the Supply Chain Emission Factors with Margins most appropriate for their use. Organizations purchasing intermediate products at the factory gate will likely find the Supply Chain Emission Factors without Margins to be most appropriate.

See the Executive Summary of the associated report for an example calculation using the factors.

All factors are associated with limitations and variations in underlying data quality. We encourage the reader to carefully read the report to understand the differences across these sets, underlying assumptions in their calculation, their limitations to decide if they are appropriate for their intended use. If the reader deems the factors are appropriate, this report along with the factor data quality scores will aid in selection of factors best fit for their intended use.
DOI: 10.23719/1518372
title: Monoassociation with bacterial isolates reveals the role of colonization, community complexity and abundance on locomotor behavior in larval zebrafish

description: Across taxa, animals with depleted intestinal microbiomes show disrupted behavioral phenotypes. Axenic (i.e., microbe-free) mice, zebrafish, and fruit flies exhibit increased locomotor behavior, or hyperactivity. The mechanism through which bacteria interact with host cells to trigger normal neurobehavioral development in larval zebrafish is unknown. Here, we monoassociated zebrafish with either one of six different zebrafish-associated bacteria, mixtures of these host-associates, or with an environmental bacterial isolate. We found that while the axenic cohort was hyperactive, monoassociation with three different host-associated bacterial species, as well as with the mixtures, resulted in control-like locomotor behavior. Monoassociation with one host-associate and the environmental isolate resulted in the hyperactive phenotype characteristic of axenic larvae, while monoassociation with two other host-associated bacteria partially blocked this phenotype. Furthermore, we found an intriguing inverse relationship between the total concentration of bacteria per larvae and locomotor behavior. These data support a growing body of evidence that individual species of bacteria can have different effects on host behavior, potentially related to their success at intestinal colonization. Specific to the zebrafish model, our results suggest that differences in the composition of microbes in fish facilities could have profound effects on the outcomes of behavioral and pharmacological studies.
DOI: 10.23719/1518467
title: Temperature, ozone, and PM2.5 data for "Associations Between Simulated Future Changes in Climate, Air Quality, and Human Health" by Fann et al., 2021.

description: This dataset contains modeled temperature, ozone, and PM2.5 data for the United States over the 21st century, using two global climate model scenarios and two emissions datasets.
DOI: 10.23719/1518469
title: Headwater Wetland Hydrologic Modeling

description: These are input data to the Soil and Water Assessment Tool (SWAT) developed for a watershed and Artificial Neural Network (ANN) constructed as a simulation model for the wetland as well as outputs from the two models that were used to construct all figures in the manuscript. The SWAT model simulated surface runoff inflow and upwelling groundwater discharge to a headwater-slope wetland in Baldwin County, Alabama and ANN simulated outflow from the wetland to a stream.
DOI: 10.23719/1518521
title: Storm surge model projections, statistical analysis, and summary data set

description: All data associated with this data entry are the simulations related storm surge in  three case study locations. These simulated water height, wind and other physical parameters are used for analysis to construct all the figures presented herein.
DOI: 10.23719/1518528
title: E1 E2 metabolism v1

description: Feminization of male fish and the role of endocrine-active chemicals in this phenomenon has been an area of intense study for many years. Estrone (E1), a natural steroid, is found in aquatic environments sometimes at relatively high concentrations. However, E1 has been less thoroughly studied than 17β-estradiol (E2) or 17α-ethynylestradiol due in part to a relatively lower potency in metabolically-limited estrogen receptor (ER) binding/activation assays. Recent evidence suggests that in vivo biotransformation of E1 to E2 may occur in fathead minnows (Pimephales promelas) residing in environments with high concentrations of E1, such as near wastewater treatment plants. The enzymes likely responsible for this biotransformation, 17β-hydroxysteroid dehydrogenases (17βHSDs), have been well characterized in mammals but to a lesser extent in fish species. In the current study, a novel systematic analysis of amino acid sequence data from the National Center for Biotechnology Information database demonstrated that multiple 17βHSD isoforms are conserved across different fish species. Experimentally, we showed that metabolically-active hepatic cytosolic preparations from two commercially important salmonid species, rainbow trout and lake trout, biotransformed E1 to E2 to a degree sufficient to alter results of competitive ER binding assays. These results from in silico and in vitro analyses indicate E1 and biotransformation may play a significant role in the feminization of a variety of fish species in contaminated aquatic environments.
DOI: 10.23719/1518572
title: Commercial imagery for seagrass 

description: Seagrass detection using commercial satellite imagery from WorldView-2 (2 m) and RapidEye (6.5 m)
DOI: 10.23719/1518687
title: DWTRs_Data_P_Sorption_Capacity_Manuscript_Data 

description: DWTRs Data and P sorption capacity
DOI: 10.23719/1518758
title: Region 10 EPA data included in the manuscript: Timber harvest alters mercury bioaccumulation and food web structure in headwater streams

description: The data set includes all of the filtered water data for total-mercury and methylmercury in stream water that is referenced in the manuscript.  All other data in the paper was collected by the USGS and is available at: https://www.sciencebase.gov/catalog/item/5de95518e4b02caea0eed89d
DOI: 10.23719/1519125
title: Contiguous Low Oxygen Waters Between the Continental Shelf Hypoxia Zone and Nearshore Coastal Waters of Louisiana, USA: Interpreting 30 Years of Profiling Data and Three-Dimensional Ecosystem Modeling

description: These data include field observations from Northern Gulf of Mexico research surveys from numerous research organizations between 1985 through 2015. Data also include hydrodynamic and water quality model data generated by the Coastal Generalized Ecosystem Model (CGEM) between 2003-2007.
DOI: 10.23719/1519140
title: Brumfield et al 20xx_Data Set

description: Log10 fecal score ratios for eligible microbial source tracking qPCR assays
DOI: 10.23719/1519170
title: Wilkin et al. (2020) PRB REE dataset

description: The dataset contains Rare Earth Element concentration data in groundwater at various sites in the United States where in-situ remediation technologies are used for site management.
DOI: 10.23719/1519251
title: Seafood, wine, rice, vegetables, and other food items associated with mercury biomarkers among seafood and non-seafood consumers: NHANES 2011-2012

description: Code for analysis of NHANES data
DOI: 10.23719/1503159
title: Draft Escherichia bacteriophage genome sequences from raw wastewater

description: Somatic coliphages are alternative indicators of fecal pollution and are attractive surrogate for viral pathogens. Here we report the draft genome sequences of three replicate plaques from a novel myoviridae bacteriophage isolated from raw wastewater. Genomes were similar to felix01virus phage and are predicted to contain up to 159 protein coding genes.
DOI: 10.23719/1503407
title: Respirometry, Biochemistry and Carbonate Chemistry

description: Data includes water quality and carbonate chemistry parameters measured during the experiment (temperature, salinity, dissolved oxygen, pH, total alkalinity and pCO2), oxygen consumption rates of fish (respirometry) as well as several biochemical endpoints related to anaerobic metabolism (Lactate Dehydrogenase), oxidative stress (protein carbonyl formation, Superoxide dismutase and Catalase), and acid-base homeostasis (Carbonic Anhydrase and Na+/K+ ATPase activity)
DOI: 10.23719/1503412
title: ApplyingEnvironmentalReleaseInventories_Data

description: Physicochemical and environmental data on compounds found in thermochemical and biochemical routes for producing biofuels.
DOI: 10.23719/1503429
title: Stanley and Wilkin (2019) dataset

description: The spreadsheet contains mineralogical and solubility data for the uranyl minerals: metaschoepite and uranophane.
DOI: 10.23719/1503525
title: README_nysdoh

description: The "dataset" is simply a README file that contains information about the data that EPA provided to the lead authors and where to acquire the data on the EPA high-performance computing system archive.  Those data exceed 1 gigabyte in size, so they are too large to be hosted on ScienceHub.
DOI: 10.23719/1503667
title: NaHRSI Scored Results

description: Domains, Indicators and Metrics of NaHRSI and CRSI
DOI: 10.23719/1503713
title: SciHub Disinfectant Impact

description: Contains Sample ID, Disinfectant type, Cold/Hot, Total Chlorine Residual, Genomic Target/L
DOI: 10.23719/1504080
title: Adverse Outcome Pathway Network-Based Assessment of the Interactive Effects of an Androgen Receptor Agonist and an Aromatase Inhibitor on Fish Endocrine Function

description: Adverse outcome pathway (AOP) networks potentially provide a basis for predictive approaches to assess the toxicity of chemical mixtures. This study evaluated the utility of a simple AOP network to predict the interactive effects of a binary chemical mixture comprised of an inhibitor of the aromatase enzyme (fadrozole, a human pharmaceutical) and an agonist of the androgen receptor (trenbolone, a veterinary drug). Overall, prediction of interactive effects of the two chemicals based on the AOP network did not match actual observed effects. Rather, the two compounds seemed to interact in an independent manner in terms of their effects on the hypothalamic-pituitary-gonadal axis in the fish.
DOI: 10.23719/1504228
title: stable carbon and oxygen isotope ratios in tree-rings for five field sites in western Oregon

description: Cellulosic stable carbon and oxygen isotope values in tree-rings of mature Douglas-fir trees at five sites in western Oregon.
DOI: 10.23719/1504251
title: Data from "Air pollution control strategies directly limiting national health damages in the US", by Ou et al.

description: This file describes the dataset used in Ou et al., "Air pollution control strategies directly limiting national health damages in the US."

This work used the Global Change Assessment Model (GCAM) with state-level representation of the U.S. energy system (GCAM-USA). GCAM and GCAM-USA are developed and released by the University of Maryland/Pacific Northwest National Laboratory Joint Global Change Research Center (JGCRI). For further details, see the GCAM documentation: jgcri.github.io/gcam-doc. The model source code is available at github.com/JGCRI/gcam-core.

A modified version of GCAMv4.3 was used for this analysis. Source code and input data specific for this paper are available upon request. 

This dataset contains Excel spreadsheets and an R script that link to comma-separated values (CSV) files that were extracted from the model output. The spreadsheets and scripts show the data and reproduce each of the figures in the paper.
DOI: 10.23719/1504440
title: 2016 RNA sequencesfor cyanobacterial bloom

description: The data contained in this worksheets provide sequences submitted for public access, analysis for RNA sequences generated in this study. The data and analysis are for a manuscript "The trait repertoire enabling cyanobacterial blooms assessed through comparative genomic complexity ".
DOI: 10.23719/1504441
title: Rajib2019_UMRB_WRR2020

description: The dataset includes information to make Figures 1 through 6 of the manuscript.
DOI: 10.23719/1504445
title: Species sulfur sulfate raw data

description: Measurements of water sulfate concentrations at the beginning and end of the exposures of the animals, initial δ(34S/32S) ratios in the animals at the beginning and end of the exposures, and initial δ(34S/32S) ratios of the exposure water.
DOI: 10.23719/1504542
title: DJ Basin PC Study

description: This dataset contains information on pneumatic controllers encountered on  the oil and gas production sites surveyed as part of the study.  The dataset includes the type and use of the controllers along with optical gas imaging observation results on observed emissions from the controllers and high volume sampler emission assessments of a subset of controllers measured.
DOI: 10.23719/1506071
title: Characterization results

description: Characterization data set