cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14286164.v1
title: Parque Nacional da Serra dos Órgãos: the highest Amphibian diversity within an Atlantic Forest protected area

description: Abstract: We studied the amphibian community of the Parque Nacional da Serra dos Órgãos (PARNASO) for over thirty years. The area of 20,024 hectares has a steep altitudinal gradient (200-2,263 m a.s.l.), and it is located in the municipalities of Guapimirim, Magé, Petrópolis and Teresópolis, middle of the state of Rio de Janeiro, Brazil. Most data were obtained from sampling sites in the municipality of Teresópolis, with additional data from zoological collections and bibliography. We recorded 83 amphibian species distributed in two orders, Anura, 13 families: Aromobatidae (1), Brachycephalidae (11), Bufonidae (5), Centrolenidae (2), Craugastoridae (2), Cycloramphidae (8), Hemiphractidae (7), Hylidae (28), Hylodidae (6), Leptodactylidae (5), Microhylidae (1), Odontophrynidae (3), Phyllomedusidae (3) and Gymnophiona, one family: Siphonopidae (1). In addition, we present six species that occurs in the buffer zone. Ten of these species are endemic of the park, 18 have PARNASO as its type locality, and five the type locality is at the buffer zone.
DOI: 10.6084/m9.figshare.14286162.v1
title: Are ants attracted to herbivorized leaves of Caryocar brasiliense Camb. (Caryocaraceae)?

description: Abstract Different profiles of secondary compounds are released by plants after herbivore attack. Many of these compounds are used by predators and parasitoids to locate herbivores that are damaging leaves. Such an induced indirect defense was tested with the Caryocar brasiliense-ant system in the dry season, when C. brasiliense has old leaves, and in the rainy season, when C. brasiliense has new leaves. A total of 20 plants were analyzed per season. Two opposite leaves of the same branch were selected for each plant. Approximately 40% of the area of one leaf was removed (treatment leaf) while the other leaf remained intact (control). The number of ants that visited each leaf was counted simultaneously for a period of 15 minutes and the mean difference in ant number was tested by paired t-test. The mean number of ants differed significantly between treatment and control only in the rainy season (t = 3.004, df = 19, p = 0.007). This finding suggests the presence of induced defense in this system only when the leaves are young. The study supports the Optimal Defense Theory since young leaves of C. brasiliense with artificial damage attracted significantly more ants than leaves without damage and represents the first evidence of an induced defense mechanism in the C. brasiliense-ant system.
DOI: 10.6084/m9.figshare.14286161.v1
title: Arctiini Leach, [1815] (Lepidoptera, Erebidae, Arctiinae) of the Brazilian Amazon. V - Subtribes Arctiina Leach, [1815], Callimorphina Walker, [1865] and Spilosomina Seitz, 1910

description: Abstract The Arctiina, Callimorphina and Spilosomina moths comprise 340 species in the neotropics. Here we provide a list of Arctiina, Callimorphina and Spilosomina species from the Brazilian Amazon. The list was produced from specimens deposited in the most important Brazilian collections and from literature data. We registered 17 species of Arctiina, two of Callimorphina and 16 of Spilosomina. The proportion of Brazilian Amazon Callimorphina (28.6%) and Arctiina (19.1%) in relation to Neotropical fauna were nearly to those found for other Arctiini subtribes in the Brazilian Amazon. However, the Spilosomina records were extremely low, corresponding to only 6.6% of the Neotropical species. Belém, Fonte Boa and Santarém were the municipalities with the highest number of registered species, with 14, 9 and 8, respectively. As this is the last article on the fauna of the Arctiini subtribes of the Brazilian Amazon, we summarize the main patterns observed for the tribe and identify the main knowledge gaps regarding this taxon.
DOI: 10.6084/m9.figshare.14286159.v1
title: The role of spatial and environmental variables in shaping aquatic insect assemblages in two protected areas in the transition area between Cerrado and Amazônia

description: Abstract: The distribution of aquatic insects of the orders Ephemeroptera, Plecoptera, and Trichoptera (EPT) can be influenced by factors such as water quality, habitat integrity and biogeography. The present study evaluated the structure of EPT assemblages in streams in the Cerrado, a global biodiversity hotspot. Samples were collected from 20 streams in two protected areas: Parque Estadual do Mirador (10 streams) and Parque Nacional da Chapada das Mesas (10 streams). A total of 1987 specimens were collected, representing 46 taxa of EPT. The two study areas did not differ significantly in taxonomic richness of EPT genera (t = -1.119, p = 0.279) and abundance of individuals (t = 0.268, p = 0.791) but did differ in genus composition (Pseudo-F = 2.088, R2 = 0.103, p = 0.015) and environmental variables (Pseudo-F = 2,282, R2 = 0.112, p = 0.014). None of the tested environmental variables were correlated with the community but a spatial filter captured an effect of the spatial distribution of streams. The region of the study is located in MATOPIBA, which is the last agricultural frontier of the Cerrado. Therefore, it is important that there is police and monitoring so that the “Parque Estadual do Mirador” and the “Parque Nacional da Chapada das Mesas” continue to play their role in conserving biodiversity in the future.
DOI: 10.6084/m9.figshare.14286156.v1
title: Diet and histological features of digestive tube from four discarded fish species by trawl bycatch in Northeastern Brazil

description: Abstract: Fish feeding habit associated to the morphology of their digestive tube can provide useful biological and ecological information. Between January and December 2012, we examined 16 fish species discarded by trawl in the Potiguar basin, northeastern Brazil, and classified them into four groups according to Alimentary Index - IAi. Our aims were to: (1) provide information on diet composition of one species represented by each group (Opisthonema oglinum, Conodon nobilis, Larimus breviceps and Sphoeroides testudineus), (2) examine the morphology of their digestive tube, and (3) associate ingested food items with the morphological features. Stomach contents were collected and classified according to IAi: main, accessory and secondary categories; fragments of esophagus, stomach, and small intestine were examined using paraffin section technique. Biometric data (total length-TL, standard length-SL and total weight-TW), stomach weight-SW, and gonadal weight-GW were recorded and applied in two indices: (1) the stomach Repletion Index - SRI (SRI = SW/TW × 100) and (2) the gonadosomatic index - GSI (GSI = GW/TW × 100) for the analyses of feeding and reproductive activities, respectively. The main food categories were (1) Teleostei for C. nobilis, (2) Crustacea for L. breviceps and O. oglinum, and (3) Mollusca for S. testudineus. The feeding activity was higher during the dry season, while the GSI was higher in the rainy season. The morphological analysis revealed a regular structure of the tissues analyzed. We highlight the presence of tubular gastric glands and strong muscular walls in the stomach (O. oglinum; L. breviceps); well-developed pyloric caecum in the intestine (O. oglinum; C. nobilis; L. breviceps); and presence of pseudo-stomach (S. testudineus). Our study confirms that the digestive tube of the examined species has morphological adequacy for carnivorous feeding habit, providing useful information on tissue structures associated to diet composition.
DOI: 10.6084/m9.figshare.14286153.v1
title: Relative abundances of medium and large mammals in the Cueva de Los Guácharos National Park (Huila, Colombia)

description: Abstract: Medium and large mammals are greatly affected by human activities, such as, habitat loss and hunting. In Colombia, these pressures have been most extensive in the dry and Andean forests. However, there is scare information available on the presence or abundance of these organisms for monitoring purposes. This study used photo-trapping cameras to determine the relative abundances of medium and large mammals in a mountain forest in the National Natural Park “Cueva de los Guacharos”, Huila (Colombia). Additionally, we examined whether trail use by humans could affect the distribution of these organisms. The cameras were located every 500 meters along the trails in strategic locations. We obtained the relative abundance of 11 species, being medium-sized mammals the most frequent (Cuniculus paca, Dasyprocta punctata and Mazama rufina). We recorded the presence of mountain tapir (Tapirus pinchaque), dwarf red brocket (Mazama rufina) and oncilla (Leopardus tigrinus), which are found in a high threat category according to the IUCN. Activity patterns were reported for 4 different species including daytime, nocturnal and cathemeral activities. Finally, we concluded that large mammals avoided trails of frequent use, and although the relative abundance of mammals is not very high, this National Park is still supporting relevant biodiversity.
DOI: 10.6084/m9.figshare.14286151.v1
title: Lycophytes of the Chapada das Mesas National Park, Cerrado, Maranhão, Brazil

description: Abstract: Despite an increase in studies involving lycophytes and ferns in recent years, Maranhão is still one of the northeastern states with a poorly known flora, mainly due to low sampling. For Chapada das Mesas National Park, a protected conservation unit in the Cerrado maranhense with phytophysiognomies that favor floristic diversity, there are no floristic studies about lycophytes. This study aimed to conduct the floristic inventory and taxonomic study of lycophytes in Chapada das Mesas National Park. Three collection expeditions, of three days each, were made between March 2017 and June 2018. Three families of lycophytes represented by three genera and six species were identified in the study area. The most diverse family was Selaginellaceae with four species: Selaginella conduplicata, S. erythropus (Mart.) Spring, S. radiata (Aubl.) Baker and S. simplex Baker. The other two families, Isoëtaceae and Lycopodiaceae, had one species each, Isoëtes sp. and Palhinhaea cernua (L.) Franco & Vasc. This study also reports two new record for the Brazilian Cerrado phytogeographic domain, S. conduplicate and S. radiata, of which the first is a new record for Maranhão State. Most specimens were found in riparian forest on rocky outcrops.
DOI: 10.6084/m9.figshare.14286150.v1
title: Dalechampia (Euphorbiaceae, Acalyphoideae): synopsis of species from Northeast Brazil

description: Abstract: A synopsis of the Dalechampia from Northeastern Brazil is presented here, with discussions of their diagnostic features. The study was based on the analysis of herbarium material (including historical collections and types), specimens collected in the field, and bibliographic documentation. Twenty-eight species distributed among five sections were recognized, 19 of them endemic to Brazil. Most of the species are found in Caatinga and Atlantic Forest vegetation. A key for species identifications is provided, together with illustrations, and information on their geographic distributions and conservation statuses.
DOI: 10.6084/m9.figshare.14286148.v1
title: Synopsis of the tribe Cocoseae Mart. (Arecoideae, Arecaceae) in the state of Maranhão, Brazil

description: Abstract: This study presents a synopsis of the tribe Cocoseae (Arecaceae) for the Maranhão state, which was based on the descriptive analysis of voucher specimens of national and international herbaria, from loans, collection visits, digital platforms, and materials collected in expeditions. Twenty-five species belonging to seven genera were identified. The genus Bactris Jacq. ex Scop. was the most representative with seven species, followed by Attalea Kunth. (five spp.), Syagrus Mart. (five spp.), Astrocaryum G. Mey. (three spp.), Desmoncus Mart. (three spp.), Acrocomia Mart (one spp.), and Allagoptera Nees (one sp.). Four new records of occurrence were found for Maranhão: Allagoptera leucocalyx (Drude) Kuntze, Attalea barreirensis Glassman, Attalea phalerata Mart. ex Spreng. and Syagrus glazioviana (Dammer) Becc. This paper presents a taxonomic key for the species, as well as geographic distribution maps and photographic plates with the distinguishing characteristics for each taxon. Besides the taxonomic characteristics, common names, ecological data, and conservation status are included.
DOI: 10.6084/m9.figshare.14286146.v1
title: Twigs occupied by Pheidole Westwood, 1839: Is there a difference between species?

description: Abstract: Pheidole is a genus with wide geographical distribution and diversity, especially in the leaf litter of neotropical forests, where nests are found at the soil-litter interface, in the soil and vegetation, among leaves, seeds, and twigs. Despite the availability of twigs and Pheidole species diversity in the leaf litter, most of this resource is not occupied, which suggests the existence of filters. This study analyzes whether twigs occupied by Pheidole species differ for the outer structure and anatomy of the wood. Twigs were collected from preserved Atlantic Forest fragments in southeastern Brazil. Twigs with Pheidole colonies were measured and the wood anatomy analyzed. We collected 224 twigs with Pheidole colonies, but the analysis was done at 41% due to wood decomposition. Five species were recorded in these twigs, which differ for the outer structure and anatomy of the wood. These results suggest the existence of preference in the occupation of twigs determined by wood structure.
DOI: 10.6084/m9.figshare.14286143.v1
title: Woody vegetation associated with rocky outcrops in Southern Amazonia: a starting point to unveil a unique flora

description: Abstract: Vegetation associated with rocky outcrops is responsible for increasing floristic and landscape diversity, since its flora can be different from the adjacent landscape. Our objective was to characterize the woody vegetation associated with the rocky outcrop of the RPPN Mirante da Serra, Cristalino region, Mato Grosso State, Brazil. In a Deciduous Seasonal Forest associated with granite outcrops, we demarcated a plot of 1ha. We performed collections on this plot, installed for conducting monitoring studies, and also random collections on trails near the plot to better represent the outcrop flora. We totaled 126 species, 95 genera and 39 families. Overall, 18 species were increased to the Flora of Cristalino - with seven new records to the flora of Mato Grosso and four new records to the Amazon Domain. We found two threatened and 17 Brazilian endemic species. The rocky outcrop present in the RPPN Mirante da Serra is an important conservation area for a continuous execution of floristic studies in a manner to enable a monitoring program of the area, considering the new occurrence records and also because it contains threatened species.
DOI: 10.6084/m9.figshare.14286140.v1
title: Protocol for Membracidae inventory (Hemiptera, Auchenorrhyncha, Membracoidea): what are the ideal collection methods for the Atlantic Forest?

description: Abstract: Membracidae are phytophagous insects that present different types of behavior, requiring a specific protocol for fast and efficient collection. This article evaluates the best methods for sampling these insects in Atlantic Forest areas. The protocol was applied in four areas of the Atlantic Forest in Paraíba state, Brazil, and involved a team of four people at a cost of US$180 per area. Each area contained 100 sampling units subdivided into 30 yellow sticky cards in the canopy and 30 yellow sticky cards in the lower stratum, 30 active collections and 10 light traps. In total, 2,678 specimens belonging to 91 species were sampled. The highest abundance and richness values were obtained using active collection (N = 1,517; S = 42) and cards in the canopy (N = 345; S = 53). All methods exhibited high complementarity, with more than half of the species (S = 50; 54.35%) recorded exclusively by only one of the methods applied. Similarity analysis revealed that active collection differs significantly from all other methods (R = 0.10, p = 0.0001) and that the sticky cards in the canopy differ from the collection in the lower stratum (p = 0.0001), whereas the other method pairs did not exhibit significant differences. In all areas, the active collection, the sticky cards in the canopy and the lower stratum had the best sample sufficiency, with at least 60% of the estimated values. To inventory Membracidae specimens in areas of the Atlantic Forest, a protocol that combines different collection methods is required, which in principle requires more time and expense. However, it is worth noting that it is possible to adjust this protocol according to the researcher’s need. For a faster survey that includes the largest number of species, we suggest a combination of active collection and a light trap.
DOI: 10.6084/m9.figshare.14286138.v1
title: An annotated list of plant viruses and viroids described in Brazil (1926-2018)

description: Abstract: A list of plant species, in alphabetical order by their scientific name, and the viruses found naturally infecting them in Brazilian territory, with some comments, was prepared . The production of such a list was based on a yearly catalog of publications on plant viruses collected by the author, from 1926 to 2018. Listed species of viruses were those recognized by the International Committee on Taxonomy of Viruses (ICTV), but also those characterized and still waiting official recognition, were included. Several cases of putative viral diseases were listed for historical reasons expecting to raise interest for their clarification. This list includes 345 plants species belonging to 74 families naturally infected by plant viruses in Brazil. Fabaceae and Asteraceae had most virus-infected species, respectively 49 and 36. Until 2018, a total of 213 plant virus and 6 viroid species belonging to 57 genera and 22 families and 6 orders, officially recognized by ICTV, were found naturally infecting these plants. Begomovirus and Potyvirus genera have most representatives, with 45 and 42 species, respectively. There are 59 characterized plant viruses, up to species level, described in Brazil waiting for the inclusion in the ICTV Master Species List. One hundred and thirteen viruses were identified up to genus level but still uncharacterized, while four putative isometric viruses and eleven presumptive viral diseases (“unidentified”) are included in the list. A reverse catalog, listing viruses and the plant species in which they were found is also included.
DOI: 10.6084/m9.figshare.14286137.v1
title: Reduction in the frequency of Aspergillus spp. in broiler facilities subjected to cleaning and disinfection

description: ABSTRACT The present study analyzes influence of two cleaning and disinfection protocols on frequency of Aspergillus spp. in broiler facilities. We conducted an observational study, applying two cleaning and disinfection protocols before housing 960 one-day-old broilers randomly allocated in 32 boxes with 30 birds. We considered two types of housing as independent experiments, which differed as to the bedding. First experiment consisted of new bedding materials, which we reused in second experiment. We applied two different treatments, Common treatment included sweeping organic matter, humidifying residual material with low pressure water, washing with water and neutral detergent, with posterior rinsing. European treatment was according to the standards of the manufacturer of disinfectants. Procedures included dry and humid organic matter removal, humidification, washing with high pressure water, application of detergent, rinsing, and application of two compound disinfectants: glutaraldehyde (250 g/L) + formaldehyde (185 g/L); p-chloro-m-cresol (210 g/L). To evaluate the presence of Aspergillus spp., we collected samples from surfaces and equipment before and after cleaning and disinfection, at 7, 14, 28, and 42 days of experimental period. Mycological assessment included streaking on Petri dishes containing AFPA (Aspergillus Flavus and Parasiticus Agar, Sigma Aldrich®). Common cleaning and disinfection treatment led to a higher presence of fungus in floors and walls (83% vs. 0% p = 0.0030 and 50% vs. 0% p = 0.0450) in first and second experiments, respectively. As this study demonstrates by using the European procedures, performing a detailed cleaning and disinfection protocol reduces the presence of Aspergillus spp. in broiler facilities.
DOI: 10.6084/m9.figshare.14286134.v1
title: Gastrointestinal nematode infection in Purunã heifers raised in conventional and integrated livestock forest systems

description: ABSTRACT The objective of the study was to evaluate the resistance of Purunã heifers to nematode infection in two different production systems. In this study, 29 heifers were divided into eight pickets, four in an integrated livestock forest system (ILF) and four in a conventional pasture system (CPS). Feces were collected monthly to perform the fecal egg count (FEC), evaluate the degree of infection caused by gastrointestinal nematodes in cattle, and carry out coproculture, to identify the genus of the parasites. In addition, animal body weight was determined to evaluate performance. On the same day as the measurements, forage samples were collected to determine the number of infective larvae per kilogram of dry matter (L3/kg DM) in each picket. There were no statistical differences in FECs between the treatments. Although no significant differences were observed in the recovery of L3/kg DM, the contamination was higher in the ILF compared to CPS in December (344 and 37.7 L3/kg DM, respectively) and January (312 and 0 L3/kg DM, respectively). In March, the CPS (321 L3/kg DM) presented higher contamination than the ILF (80.7 L3/kg DM), but with no statistical difference. The weight of the animals was higher for the CPS compared to the ILF treatment throughout the whole experimental period, with a significant difference in December (343.30 kg and 314.08 kg, respectively). The present study demonstrated numerically that greater numbers of L3 were recovered from pasture of the ILF, which could have resulted in higher contamination and lower performance of the animals.
DOI: 10.6084/m9.figshare.14286133.v1
title: Phenotypic characterization and weight prediction of crossbred Dorper × Santa Inês ewes

description: ABSTRACT The objective was to determine zoometric indices, correlate, and predict body weight based on the biometric measurements of F1 Dorper × Santa Inês (F1 D × SI) ewes created extensively. Were 25 F1 D × SI sheep monitored, with ages varying from 2 to 9 months. Body weight, thoracic perimeter, belly perimeter, body length, withers height, rump height, rump width, and rump length were measured on a monthly basis and zoometric indices were estimated from them. Descriptive data analysis, Pearson's correlation, and regression analysis were performed. The biometric measurements and zoometric indices of F1 D × SI ewes indicate an animal of aptitude for cutting, with good conformation. In addition, they demonstrate favorable aspects for reproduction, a fundamental characteristic in the selection of matrices. Body weight has a high and positive correlation for all characteristics analyzed, with values ranging from 0.74 of the rump length to 0.88 of the thoracic perimeter. The regressions for all biometric measurements were highly significant (P &lt;0.0001) with an emphasis on the thoracic perimeter that has the highest coefficient of determination (R² = 0.77), the other measures presented below 0.70. It was concluded that F1 Dorper × Santa Inês ewes have characteristics for meat production and for reproduction. Also, of the biometric measurements, the thoracic perimeter can be used to predict the body weight of F1 Dorper × Santa Inês ewes.