cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/grt4htck9k
title: Nanopore sequencing of anti-FASII-adapted versus non-treated Staphylococcus aureus

description: Antibiotics that target the fatty acid synthesis (FASII) pathway block FASII synthesis, but do not prevent multiplication of the major Gram-positive pathogen Staphylococcus aureus. Bacteria can bypass inhibition by using exogenous fatty acids as present in animal hosts and food, making the anti-FASII an ineffective single-treatment method. The presence of serum favors adaptation to anti-FASII. We previous determined that no point mutation occurs during the adaptation period, which ranges from 6 - 8 hours according to conditions (https://doi.org/10.1016/j.celrep.2019.11.071). Here we performed genome sequencing by the nanopore method (realized by Eurofins Genomics Europe Sequencing GmbH, Germany) to determine whether genomic rearrangements occur during the adaptation event. Experiments were done using the USA300-FPR3757 strain called JE2. DNA was extracted from i- a control culture grown in 10% mouse serum (MS_col_1), and a second control culture grown in 10% newborn calf serum containing free fatty acids (170 µM each of C14:0, C16:0, C18:1) (SFA_col_1), and from ii- 2 independent anti-FASII-adapted cultures grown in 10% mouse serum + AFN-1252 (0.5 µg/ml) (MS A_col_1B and MS A_col_2), and 2 independent anti-FASII-adapted cultures grown in 10% newborn calf serum containing free fatty acids (170 µM each of C14:0, C16:0, C18:1) + AFN-1252 (0.5 µg/ml) (SFA_A_col_1 and SFA_A_col_2). Our results indicate that no genomic rearrangements are responsible for anti-FASII adaptation in the tested Staphylococcus aureus strain and conditions.
DOI: 10.6084/m9.figshare.20363382.v2
title: Data for PacBio HiFi DADA2 lab

description: Subsampled PacBio HiFi sequencing of the full-length 16S rRNA gene from 6 fecal samples and 1 mock community.
DOI: 10.6084/m9.figshare.28239155.v1
title: Supplementary Material for: Demarcation Laser Photocoagulation for Rhegmatogenous Retinal Detachment: Outcomes in Symptomatic and Asymptomatic Patients.

description: Introduction: 
Demarcation laser photocoagulation (DLP) is an infrequently utilized modality for limited retinal detachments. The current study, a retrospective consecutive case series, reviewed anatomic and visual outcomes in these patients at a single academic center. 

Case presentations: 
A search of the electronic medical record identified ten eyes of ten patients. Five of the ten patients were asymptomatic at the time of initial treatment. Five patients had symptoms corresponding to retinal detachment. The asymptomatic patients remained stable without progression at last follow-up (range 1 to 8 years). In two of five symptomatic patients, the retinal detachment progressed through the laser demarcation and subsequently underwent vitreoretinal surgery. At the last follow up, the retina was attached in all five symptomatic patients. 

Conclusion:
In this small series of patients undergoing DLP, the retina remained stable in asymptomatic patients but the retinal detachment progressed through the laser demarcation in the majority of symptomatic patients.
DOI: 10.6084/m9.figshare.6820652.v2
title: Table S1. Scaled morphometric measures for each specimen included in the full dataset. from The role of dietary competition in the origination and early diversification of North American euprimates.

description: The conditions under which early euprimates (adapids and omomyids) originated and evolved is an area of longstanding debate. The leading hypotheses of euprimate origins promulgate diet as a core component of the early evolution of this group, despite the role of dietary competition in euprimate originations never being tested directly. This study compared three competition models (non-competition, competitive displacement, competitive coexistence) with observed patterns of dietary niche overlap, reconstructed from three-dimensional molar morphology, at the time of the euprimate radiation in North America (at the Paleocene–Eocene boundary). Overlap of reconstructed multidimensional dietary niches between euprimates and members of their guild were analysed using a modified MANOVA to establish the nature of the competitive environment surrounding euprimate origins in North America (an immigration event). Results indicated that adapids entered the mammalian guild in the absence of competition, suggesting dietary adaptations that were unique within the community. Conversely, omomyids experienced strong, but transitory, competition with nyctitheriids, suggesting that omomyids possessed the ability to out-compete this group. These results show that adapids and omomyids experienced different competitive scenarios upon their arrival (origination) in North America and confirms the significance of diet (and dietary adaptations) in euprimate origination and early diversification in mammalian communities.
DOI: 10.17632/zr4fddh833
title: An Image Dataset of Advanced Imaging Techniques for Lung Cancer Diagnosis

description: This dataset consists of chest CT scan images collected from the National Institute of Diseases of the Chest and Hospital (NIDCH) in Dhaka, Bangladesh. It has been curated to support research in medical imaging, with a focus on the classification and early detection of lung-related diseases using artificial intelligence and deep learning methods. The dataset is divided into three diagnostic categories: 1050 images of malignant cases, 416 images of normal (healthy) cases, and 467 images of benign cases. Each image was carefully labeled and verified by Dr. Sabina Akter, MBBS, MD (Radiology & Imaging), Associate Professor and Head of the Department of Radiology and Imaging at NIDCH. The annotations were conducted under clinical supervision to ensure high-quality labeling suitable for academic and scientific use. This dataset provides a valuable resource for training, validating, and benchmarking AI-based models for automated diagnosis, particularly in the context of thoracic diseases and pulmonary abnormalities. It can also serve as a foundation for developing clinical decision support systems intended for deployment in real-world healthcare settings.
DOI: 10.6084/m9.figshare.25728360.v1
title: Tundra peat patches core data

description: Tundra peat patches core data, accompanying the paper by Cleary et al.
DOI: 10.6084/m9.figshare.7297745.v1
title: NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_metadata.csv

description: Variable descriptions for "NicholsonRicketts2018_NativeBeeVisits_yieldMetrics_data.csv"
DOI: 10.6084/m9.figshare.13083992.v1
title: Data related to the paper titled: Boulder fall activity in the Jezero crater, Mars.

description: Data related to the paper titled: Boulder fall activity in the Jezero crater, Mars. This excel file contains data related to: boulder location, track start lat. long, track end lat. long., track morphology, boulder length, track length, track width, track slope, boulder source slope, shadow angle, tangent of shadow angle, boulder volume, horizontal distance, vertical fall height, L by H.
DOI: 10.6084/m9.figshare.5123614.v1
title: Supplementary Material for: Effekte kognitiver Verhaltenstherapie bei Panikstörung: Mehr Exposition bringt stabilere Therapieerfolge

description: <b><i>Hintergrund:</i></b> Eine beeindruckende Vielzahl an Therapiestudien belegt inzwischen die Effektivität kognitiver Verhaltenstherapie in der Behandlung von Panikstörungen. Die Behandlungsprogramme setzen sich meist aus psychoedukativen, kognitiven und behavioralen (Exposition) Therapieelementen zusammen. Der Anteil von Expositionsübungen innerhalb der untersuchten Programme variiert stark. Bisher ist unklar, welchen Nutzen Expositionsphasen in einer effizienten Behandlung bringen und wie zeitintensiv diese sein sollen. In dieser Untersuchung wird der Therapieerfolg eines kognitiv-verhaltenstherapeutischen Gruppenprogramms überprüft, insbesondere, ob eine Erhöhung des Anteils an Expositionsübungen zusätzliche Therapieeffekte bringt. <b><i>Methode:</i></b> Verglichen wurden 2 Patientengruppen mit Panikstörungen. Beide Gruppen nahmen an einem stationären Gruppentherapieprogramm zur Angstbehandlung teil, das ein Expositionstraining beinhaltete. Für die 1. Behandlungsgruppe (n = 81) erfolgte ein Expositionstraining von einem Tag therapeutenbegleiteter Exposition, für die 2. Gruppe (n = 88) wurde die Expositionszeit verlängert und es erfolgten 2 Tage Exposition. Der Verlauf symptomspezifischer Variablen (Vermeidungsverhalten, ängstliche Bewertungen), depressiver Symptome und psychosozialer Beeinträchtigung wurde vor der Therapie, zu Therapiebeginn und -ende sowie in einer Katamnese (1 Jahr) erhoben. <b><i>Ergebnisse:</i></b> In beiden Gruppen zeigten sich signifikante Symptomreduktionen bei Abschluss der Therapie für die störungsspezifischen Selbsteinschätzungsverfahren (Zeiteffekt MANOVA mit Messwiederholung; p &lt; 0,001). Beide Behandlungsgruppen sprachen in gleichem Ausmaß auf die Therapie an, in der Gruppe mit der verlängerten Exposition waren die erzielten Erfolge zum Katamnesezeitpunkt (1 Jahr) jedoch größer (signifikante Interaktionen Zeit × Behandlungsgruppe; p &lt; 0,001). <b><i>Schlussfolgerung:</i></b> Die Ergebnisse unterstützen die bisherige Praxis der Kombination kognitiver und verhaltenstherapeutischer Interventionsstrategien, wobei sie die Wirksamkeit der verhaltensorientierten Therapieelemente unterstreichen. Sie sprechen dafür, dass sich der erhöhte Expositionsaufwand lohnt und sich der Therapieerfolg bei Panikstörung durch eine Verlängerung der Expositionszeit verbessern lässt.
DOI: 10.6084/m9.figshare.1541243.v2
title: Stylized facts in Brazilian vote distributions

description: Data used in the peer reviewed publication:<br>Stylized facts in Brazilian vote distributions Dataset S2: State deputies. The columns give year, state, city, party, candidate name, and number of votes, obtained from Brazilian Federal Electoral Court data repository, available at http: //www.tse.jus.br/eleicoes/estatisticas/repositorio-de-dados-eleitorais
DOI: 10.6084/m9.figshare.20505675.v1
title: PSGs Results

description: aBSREL Results for the stem and crown foreground schemes. (1) stem flatfishes, which aimed to detect genes responsible for the initial break of symmetry in the single branch leading to all extant flatfish species; and (2) crown flatfishes, which aimed to detect genes responsible for further adaptations experienced later in the flatfish radiation.
DOI: 10.6084/m9.figshare.27917028.v1
title: SPSS RAW datasheet for OSATS study

description: This is raw data for tool development and validation study. We developed OSATS tool for formative assessment of endodontic access cavity opening skills
DOI: 10.17632/cthpkk4dp9
title: Article Data: Characterization of a HPHT Boron Ion-Implanted Diamond X-ray Mirror following High Vacuum Annealing

description: This collection contains processed data files to accompany the paper "Characterization of a HPHT Boron Ion-Implanted Diamond X-ray Mirror following High Vacuum Annealing" by R. A. Margraf-O’Neal, M. D. Ynsa,J. Krzywinski, M. L. Ng, J. P. MacArthur, F. Ke,Y. Zhong, S.-K. Mo, P. Pradhan, R. Robles, A. Robert, T. Sato, D. Zhu, A. Halavanau, G. Marcus. This paper will be published in "Diamond and Related Materials" in 2024.

Bdoped_Figs.ipynb is a Jupyter Notebook File that can be used to generate the figures in the paper.

Each folder contains the processed data files that were used to generate the corresponding figures. Please use these files by running Bdoped_Figs.ipynb.

For convenience, the 2D data represented in the figures of the paper can also be found in the Excel file "2D Source Data.xlsx."
DOI: 10.17632/7hk49n2nw4
title: University Technology Transfer: A Data Set Showing How University Policies, Demographics and Location Influence Success

description: This dataset includes a 5 year survey of 153 United States universities’ technology transfer outcomes, including the number of patents, licensing income, and the number of associated startups for each year collected by the annual survey of the Association of University Technology Managers (AUTM). Additional data was collected from publicly available sources and enriched by the authors. This includes information about the university location, climate, diversity, research expenditures, educational programs, relevant search engine results and other important regional factors. Additionally, the team studied the technology transfer policies for each university and encoded key factors with the data, making this data very valuable to university leaders hoping to improve their innovation and outreach impact.
DOI: 10.6084/m9.figshare.20625480.v1
title: Supplementary Material for: Effect of a multistrain probiotic on leaky gut in patients with diarrhea-predominant irritable bowel syndrome (IBS-D): a pilot study

description: Background: A probiotic mixture prevented epithelial barrier impairment in various experimental models. The objective was to evaluate its effects in patients suffering from IBS-D with confirmed leaky gut. Methods: IBS D patients with increased intestinal permeability measured by radionuclide tracers were enrolled in this pilot, open-label, prospective, interventional, single-center, Phase IV study. Patients received two capsules of a multistrain probiotic a day for 30 days and were evaluated by repeated intestinal permeability test, the Bristol Stool Scale, and patient-perceived quality of life and satisfaction. Results: Of the 30 enrolled patients (mean age: 42.1 [SD: 13.1] years; female: 60%), 27 completed the study (Full Analysis Set [FAS]), 18 had no major protocol violation (Per Protocol Set [PPS]). On D30, an improvement of intestinal permeability was observed in 81.5% of patients in FAS, normalization being observed in 37% of the participants (44% in PPS). Mean intestinal permeability was significantly decreased: baseline minus D30, 3.4 (95%CI: 1.7, 5.2); IBS-QOL Total score was significantly increased: D30 minus baseline, 8.0 (95%CI: 3.0, 12.9); stool consistency was significantly improved. On D15 and D30, 96.3% of patients claimed that their IBS symptoms had been satisfactory alleviated, and a significant improvement was reported for the following VAS-IBS items: Abdominal pain, Diarrhea, Impact of gastrointestinal problems in daily life. Compliance and tolerance were satisfactory. Conclusion: The multistrain probiotic tested may reduce intestinal permeability in a considerable proportion of patients and may improve abdominal pain, stool consistency, and quality of life. These results pave the way for larger, placebo-controlled clinical studies.
DOI: 10.6084/m9.figshare.26978404.v1
title: DATA Ecol Indic.zip

description: Submitted to the "Ecological Indicators Title: The Impact of Ecological Protection Policies Evolution on Spatial-Temporal Changes: Evidence from Qiantang River Basin", which includes the calculation of Moran I index, coupling coordination, and the structure and process of spatial Durbin model.
DOI: 10.6084/m9.figshare.28007714.v1
title: <b>A hybrid method for forest aboveground biomass estimation: Fusion of individual tree- and area-based approaches over northeas</b><b>t </b><b>China</b>

description: Currently, the large-scale above-ground biomass (AGB) estimation primarily relies on area-based approach (ABA). With advancements in individual tree detection technology and multi-platform remote sensing data availability, individual tree-based approach (ITA) offer new potential for accurate and non-destructive AGB estimation. However, research on integrating ITA with ABA for scaling AGB estimates from individual trees to the regional level remains limited. This study introduced an innovative hybrid framework incorporating ITA and ABA for regional scale estimation of forest AGB through the combination of handheld, unmanned, and satellite LiDAR and Landsat 8 imagery. We provide the handheld and unmanned LiDAR data collected in northeast China.
DOI: 10.17632/6gk2f74vbd
title: Data for: Multi-variate and Single-Variable Flood Fragility and Loss Approaches for Wood Frame Buildings

description: The provided data includes statistics for the flood depth and flood duration resistance for each component in terms of mean and standard deviation of this resistance along with their upper and lower bounds. Additionally, these components were assigned to prescribed damage states based on the description provided in the paper in Table (2). Component descriptions are also provided to indicate how each dataset was developed. Some assumptions related to the flood depth and duration resistance are from van de Lindt and Taggart [1,2] and others are from the experimental investigation by Aglan [3]. Additionally, some engineering assumptions related to flood depth and duration were made by the authors based on engineering judgment to be able to create a full probabilistic damage model; these are explicitly stated in the manuscript. The mean unit price of each component was also provided based on data collected from different online sources that use an extensive cost database from contractors biding all over the US such as Home Advisor [4], Home Guides [5], and UpCodes [6]. These source gives the prices in terms of the upper and lower bounds based on the building location and other parameters related to labor cost, materials used, etc. Therefore, minimum, maximum and mean value of the replacement cost of each component was provided along with their standard deviations calculated using the Range Rule of Thumb [7]. Furthermore, the mean and standard deviation of each damage state replacement cost are provided in USD and also provided as a percentage of the total building replacement cost. References [1] van de Lindt JW, Taggart M. Fragility Analysis Methodology for Performance-Based Analysis of Wood-Frame Buildings for Flood. Nat Hazards Rev 2009;10:113–23. doi:10.1061/(ASCE)1527-6988(2009)10:3(113). [2] Taggart M. THESIS Performance based design of wood frame structures for flooding. 2007. [3] Aglan H. Field testing of energy-efficient flood-damage-resistant residential envelope systems summary report. Oak Ridge National Lab.(ORNL), Oak Ridge, TN (United States); 2005. [4] Home Advisor 2019. https://www.homeadvisor.com/?gclid=EAIaIQobChMI9OOambL05AIVExx9Ch3E3w6zEAAYASAAEgIrb_D_BwE. [5] Home Guides 2019. https://homeguides.sfgate.com/. [6] Up Codes 2019. https://up.codes/. [7] Triola MF. Elementary statistics. Pearson/Addison-Wesley Reading, MA; 2010.
DOI: 10.21233/k37v-gp89
title: Lake Biwa, North Basin ostracode surface sample dataset

description: Raw data for the Lake Biwa, North Basin ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.25919/wfn9-wp22
title: Bushfire fuel classification fuel types map

description: This map describes Australian fuel type classes and their estimated extents using the Bushfire Fuel Classification (BFC) framework of Hollis et al. (2015) and Cruz et al. (2018). The BFC is a hierarchical, structure-based classification system for fuel complexes, enabling distinct fuel extents and characterisations to be mapped directly onto fire behaviour models. The map has been generated using nationally consistent, open-source datasets, predominantly derived from remotely sensed data, to quantitatively characterise vegetation life forms, height and foliage cover. The automated production of this map allows for rapid versioning as data inputs are enhanced. This version of the BFC fuel types map integrates multiple spatial and temporal resolution datasets, ranging from 10 to 500 metres. For a detailed methodology, refer to Joshi et al., (in press), available upon request.
DOI: 10.6084/m9.figshare.28715903.v1
title: Genome annotation of Chinese soft-shelled turtle (Pelodiscus sinensis)

description: Genome annotation of Chinese soft-shelled turtle
DOI: 10.17632/jtw2j5fsxy
title: (Data set)Innovations in Educational

description: This dataset contains responses from 63 eighth-grade students who evaluated an Android math application used for teaching statistics. It includes variables on user satisfaction, content relevance, interface usability, and the likelihood of recommending the application.
DOI: 10.6084/m9.figshare.25466188.v9
title: Robust Statistical Techniques for Operational Maintenance of the 10.7 cm Solar Radio Flux

description: Contains Python code for using Feature Ordering by Conditional Independence and Generalized Additive Models to reconstruct the F10.7 solar index across gaps of various length.
DOI: 10.6084/m9.figshare.23731692.v1
title: Data Study 3 for Book Writing to Learn Academic words: Assessment, Cognition, and Learning

description: This data is a combination of the data from Study 2 and Study 3 in the book.
DOI: 10.6084/m9.figshare.24049380.v1
title: Bulk RNAseq of 5 primary kidney fibroblast cell lines

description: Tables are given as raw count or as tpm normalizationMetadata identifies the conditions of culture
DOI: 10.6084/m9.figshare.28512464.v1
title: Carbon Mitigation Potential in Building Design: A Region-Specific LCA Approach for Nature-Based ConstructionSupplementary Data.xlsx

description: We conduct a transparent LCA comparing mid-rise housing typologies in Germany, Indonesia, and Bhutan, systematically assessing conventional and nature-based construction to reflect current practices and future material choices. The supplementary data for <i>Carbon Mitigation Potential in Building Design: A Region-Specific LCA Approach for Nature-Based Construction</i> includes a short explanation of the assessed LCA modules, detailed material layers for all typologies, building-component-results per LCA module, whole-building results in different units for comparability.
DOI: 10.6084/m9.figshare.6025238.v1
title: DEMETER2 data

description: Cancer cell line genetic dependencies estimated using the DEMETER2 model. DEMETER2 is applied to three large-scale RNAi screening datasets: the Broad Institute Project Achilles, Novartis Project DRIVE, and the Marcotte et al. breast cell line dataset. The model is also applied to generate a combined dataset of gene dependencies covering a total of 713 unique cancer cell lines. For more information visit https://depmap.org/R2-D2/. <br>Visit the Cancer Dependency Map portal at https://depmap.org to explore related datasets. Email questions to depmap@broadinstitute.org <br>This dataset includes gene dependencies estimated using the DEMETER2 model, the raw input datasets used to fit the models, as well as associated metadata. See Readme file for more details about the dataset contents.
DOI: 10.6084/m9.figshare.24770862.v1
title: Sampling data set

description: In areas where livestock is bred, there is a demand for accurate, real-time, and stable monitoring of ammonia concentration in the breeding environment. Existing electronic nose systems, however, struggle with slow response times and limited detection accuracy. This paper introduces a novel solution: an active pumping ammonia detection system using artificial olfaction based on a biomimetic chamber. We analyzed the biomimetic chamber’s structure and the sensor array's surface airflow to determine the system’s sensing units. The system employs an electronic nose to detect ammonia and ethanol gases in a circulating airflow within a closed box. The captured signals underwent processing, followed by the application of classification and regression models for data prediction. Our results suggest that this system, leveraging the biomimetic chamber, offers rapid gas detection response times. Incorporating a backpropagation (BP) neural network algorithm, it realizes high classification prediction accuracy, with a determination coefficient R² value of 0.99 for single-output regression and over 0.98 for multi-output regression predictions. These outcomes demonstrate the system’s effectiveness in accurately detecting ammonia emitted during livestock fermentation, meeting the ammonia detection requirements of breeding farms.