cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/rpc-0m5-cgz
title: Diogenella spinicauda Stock, 1968

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/nw595bg6402
title: Engineered matrices reveal stiffness-mediated chemoresistance in patient-derived pancreatic cancer organoids

description: Pancreatic ductal adenocarcinoma (PDAC) is characterized by its fibrotic and stiff extracellular matrix (ECM). However, how the altered cell-ECM signalling contributes to the PDAC tumour phenotype has been difficult to dissect. Here, we design and engineer matrices that recapitulate the key hallmarks of the PDAC tumour ECM to address this knowledge gap. We show that patient-derived PDAC organoids from three patients develop resistance to several clinically-relevant chemotherapies when cultured within high stiffness matrices mechanically matched to in vivo tumours. Using genetic barcoding, we find that while matrix-specific clonal selection occurs, cellular heterogeneity is not the main driver of chemoresistance. Instead, matrix-induced chemoresistance occurs within a stiff environment due to the increased expression of drug efflux transporters mediated by CD44 receptor interactions with hyaluronan. Moreover, PDAC chemoresistance is reversible following transfer from high to low stiffness matrices, suggesting that targeting the fibrotic ECM may sensitize chemoresistant tumours. Overall, our findings support the potential of engineered matrices and patient-derived organoids for elucidating ECM contributions to human disease pathophysiology.
DOI: 10.3535/bmj-sgk-c6c
title: Thamnomolgus robustus Humes, 1969

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/wek-f7a-6vp
title: Caribulus sculptus (Humes, 1969)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/5e0-jrg-sl9
title: Munida Leach, 1820

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/qy460ws0263
title: XPCS and MD data and codes for supercritical carbon dioxide

description: Supercritical fluids have a vast scientific and industrial applications owing to their unique thermodynamic and transport properties. Such properties stem from the formation of molecular clusters near critical point of the fluid. While the structure of such clusters and their influence on thermodynamic properties have been studied in detail, the study of cluster dynamics and its role in transport processes is still an open question. The primary challenge in studying cluster dynamics is their ultrafast timescales. To overcome this challenge, we used split-pulse X-ray Photon Correlation Spectroscopy to directly measure the ultrafast cluster dynamics in supercritical carbon dioxide at nanometer length scales.  By combining our measurements with large scale molecular dynamics simulations, we discover the unique interaction between unbound molecules and clusters that lead to the observed dynamics. The deposit comprises of data files from experiment and simulations as well as analysis codes used to study the data.
DOI: 10.25740/sc811vz1270
title: 22°C vs 30°C Mouse Ex Vivo Colon and PVH Microscopy Data

description: Confocal microscopy of paraventricular hypothalamus (PVH) sections from mice raised at 22°C or 30°C were stained with RNAScope fluorescent probes for corticotropin-releasing hormone (Crh). Additionally, videos to ascertain the ex vivo motility of colons from mice raised at 22°C or 30°C are provided. Detailed methods can be found in the associated publication.
DOI: 10.3535/g7h-ghm-06v
title: Carpilius convexus (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/dx8-bgm-ja0
title: Galathea orientalis Stimpson, 1858

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/h7e-saf-hqr
title: Neomysis Czerniavsky, 1882

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.25740/cp529tx2525
title: Simulation results for "Seismic signatures of fluctuating fragmentation in volcanic eruptions" -- Coppess et al

description: Full simulation results for unsteady conduit flow modeling of injection of heterogeneous magma. These are the main results used in the following publication: "Seismic signatures of fluctuating fragmentation in volcanic eruptions."  Coppess, K. R., Lam, F. Y. K., & Dunham, E. M. (submitted 2024)

Results were generated using the following unsteady conduit flow model implemented by Fredric Y.K. Lam: https://github.com/fredriclam/quail_volcano
DOI: 10.3535/g64-ckw-yen
title: Carpilius convexus (Forskål, 1775)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/0am-rz6-xcn
title: Neomysis Czerniavsky, 1882

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/xaj-8fb-1lz
title: Anophthalmaxius eccoptodactylus De Man, 1905

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/87b-xs6-7cz
title: Pachygrapsus marmoratus (Fabricius, 1787)

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.36mkab
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Raphitoma laviae (R.A.Philippi, 1844)"
 ]
}

 The dataset includes 176 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097372-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xvcg4k
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arius jella Day, 1877"
 ]
}

 The dataset includes 24 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035849-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9skyb3
title: Occurrence Download

description: A dataset containing 504048 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Perdix perdix (Linnaeus, 1758)"
 ]
}

 The dataset includes 504048 records from 1271 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097356-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pqpybn
title: Occurrence Download

description: A dataset containing 1591 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Oxypogon guerinii (Boissonneau, 1840)"
 ]
}

 The dataset includes 1591 records from 68 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0028554-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4srty
title: Occurrence Download

description: A dataset listing the 3237 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is one of (Uruguay, Peru, Colombia)",
 "IucnRedListCategory is one of (NT, DD, CR, EW, VU, EN)",
 "OccurrenceStatus is Present",
 "TaxonKey is Animalia"
 ]
}

 The dataset's 3237 records were derived from 1375 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0197212-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25346/s6eecgix/rvfxci
title: msXV_078r_22_70.tif
DOI: 10.25346/s6eecgix/skeuax
title: msXV_078r_22_69.tif
DOI: 10.25346/s6eecgix/kujhwb
title: msXV_078r_22_68.tif
DOI: 10.25346/s6eecgix/gsynfo
title: msXV_078r_22_67.tif
DOI: 10.25346/s6eecgix/kbatlb
title: msXV_078r_22_66.tif
DOI: 10.25346/s6eecgix/1p36d8
title: msXV_078r_22_65.tif
DOI: 10.25346/s6eecgix/di9gef
title: msXV_078r_22_64.tif
DOI: 10.25346/s6eecgix/wcohbr
title: msXV_078r_22_63.tif
DOI: 10.25346/s6eecgix/co0zzj
title: msXV_078r_22_62.tif
DOI: 10.25346/s6eecgix/qciybg
title: msXV_078r_22_61.tif
DOI: 10.25346/s6eecgix/lpqcne
title: msXV_078r_22_60.tif
DOI: 10.25346/s6eecgix/kz9ihc
title: msXV_078r_15_12.tif
DOI: 10.5281/zenodo.14974462
title: Disease specific epigenetic deregulation of enhancers, transposons and polycomb in acute promyelocytic leukemia

description: APL_15_chromatin_states_segments.bed, The chromatin state model build by chromHMM using epigenetic data from APL patients. 

 

 

NB4_ATRA_72hr_RNAseq.csv, RNAseq data from NB4 cells treated with ATRA and control

 

APL_enhancers.bed, APl enhancers

 

APL_specific_superEnhancer.hg19.bed, APL super enhancers

 

APL_5000_balanced.cool, HiC of APL patient
DOI: 10.5281/zenodo.17296520
title: Disease specific epigenetic deregulation of enhancers, transposons and polycomb in acute promyelocytic leukemia

description: APL_15_chromatin_states_segments.bed, The chromatin state model build by chromHMM using epigenetic data from APL patients. 

 

 

NB4_ATRA_72hr_RNAseq.csv, RNAseq data from NB4 cells treated with ATRA and control

 

APL_enhancers.bed, APl enhancers

 

APL_specific_superEnhancer.hg19.bed, APL super enhancers

 

APL_5000_balanced.cool, HiC of APL patient
DOI: 10.15468/dl.5x28uf
title: Occurrence Download

description: A dataset containing 34007 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-30.71068 21.25202,110.71068 21.25202,110.71068 77.74798,-30.71068 77.74798,-30.71068 21.25202))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Orobanche caryophyllacea"
 ]
}

 The dataset includes 34007 records from 377 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000311-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j6qnwd
title: Occurrence Download

description: A dataset containing 73 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((71.48572 22.565969, 71.409672 22.560392, 71.335515 22.543801, 71.265089 22.516607, 71.200143 22.479486, 71.142284 22.43336, 71.092938 22.379372, 71.053318 22.31886, 71.02439 22.253321, 71.006855 22.184374, 71.001127 22.113721, 71.00733099999999 22.043103, 71.02529699999999 21.974257, 71.05456599999999 21.908874, 71.09440499999999 21.848558, 71.143827 21.794789, 71.201611 21.748881, 71.266338 21.711957, 71.336421 21.684919, 71.410149 21.668428, 71.48572 21.662886, 71.561291 21.668428, 71.635019 21.684919, 71.705102 21.711957, 71.769829 21.748881, 71.827613 21.794789, 71.87703500000001 21.848558, 71.91687400000001 21.908874, 71.94614300000001 21.974257, 71.96410899999999 22.043103, 71.970313 22.113721, 71.964585 22.184374, 71.94705 22.253321, 71.918122 22.31886, 71.878502 22.379372, 71.829156 22.43336, 71.771297 22.479486, 71.706351 22.516607, 71.635925 22.543801, 71.561768 22.560392, 71.48572 22.565969))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 73 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000312-260108223611665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxwypu
title: Occurrence Download

description: A dataset containing 282 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Exenterus abruptorius (Thunberg, 1822)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 282 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005474-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.buzrdj
title: Occurrence Download

description: A dataset containing 227 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-77.38516 4.09913,-78.13022 2.22627,-75.52688 1.77074,-75.70219 3.78432,-77.38516 4.09913,-77.38516 4.09913))",
 "OccurrenceStatus is Present",
 "TaxonKey is Iguana iguana (Linnaeus, 1758)"
 ]
}

 The dataset includes 227 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005476-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive166315.20250331.9.3
title: Pseudomonas saliphila

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166315.20251217.10
title: Pseudomonas saliphila

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166316.20250331.9.3
title: Pukyongia salina

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166316.20251217.10
title: Pukyongia salina

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166317.20250331.9.3
title: Rhizobium terrae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166317.20251217.10
title: Rhizobium terrae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/25clnl9m
title: AANN construction dataset

description: The AANN construction dataset
DOI: 10.13145/bacdive166318.20250331.9.3
title: Rhodobacter xinxiangensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166318.20251217.10
title: Rhodobacter xinxiangensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166319.20250331.9.3
title: Rudanella paleaurantiibacter

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166319.20251217.10
title: Rudanella paleaurantiibacter

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166320.20250331.9.3
title: Seonamhaeicola sediminis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/e3wbyisx
title: Abdominal CT Dataset

description: The abdominal CT scans used for the Medical Out-of-Distribution (MOOD) challenge
DOI: 10.13145/bacdive166320.20251217.10
title: Seonamhaeicola sediminis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166321.20250331.9.3
title: Streptomyces albicerus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166321.20251217.10
title: Streptomyces albicerus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166322.20250331.9.3
title: Streptomyces taklimakanensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166322.20251217.10
title: Streptomyces taklimakanensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166323.20250331.9.3
title: Tenacibaculum singaporense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166323.20251217.10
title: Tenacibaculum singaporense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/x5kpa9gf
title: MS COCO val2017 dataset

description: The dataset used in this paper is the MS COCO val2017 dataset, which is a subset of the MS COCO dataset used for validation.
DOI: 10.13145/bacdive166324.20250331.9.3
title: Tepidiphilus baoligensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166324.20251217.10
title: Tepidiphilus baoligensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166325.20250331.9.3
title: Xylanimonas protaetiae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166325.20251217.10
title: Xylanimonas protaetiae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166326.20250331.9.3
title: Duganella fentianensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166326.20251217.10
title: Duganella fentianensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166327.20250331.9.3
title: Duganella qianjiadongensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166327.20251217.10
title: Duganella qianjiadongensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166328.20250331.9.3
title: Lactobacillus suantsaicola

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166328.20251217.10
title: Lactobacillus suantsaicola

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166329.20250331.9.3
title: Lactobacillus suantsaiihabitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166329.20251217.10
title: Lactobacillus suantsaiihabitans

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/0olw2iqx
title: 2015 MICCAI sub-challenge on automatic polyp detection dataset

description: Four medical image segmentation datasets, covering various imaging modalities such as colonoscopy, dermoscopy, and microscopy.
DOI: 10.13145/bacdive166330.20250331.9.3
title: Massilia guangdongensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166330.20251217.10
title: Massilia guangdongensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166331.20250331.9.3
title: Paraoceanicella profunda

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166331.20251217.10
title: Paraoceanicella profunda

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166332.20250331.9.3
title: Bacillus aerolatus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166332.20251217.10
title: Bacillus aerolatus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166333.20250331.9.3
title: Herbaspirillum camelliae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/wpubb6bd
title: QuixBugs

description: QuixBugs is a multi-lingual program repair benchmark set based on the Quixey Challenge.
DOI: 10.13145/bacdive166333.20251217.10
title: Herbaspirillum camelliae

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166334.20250331.9.3
title: Mesorhizobium rhizophilum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166334.20251217.10
title: Mesorhizobium rhizophilum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166335.20250331.9.3
title: Paenibacillus anseongense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive166335.20251217.10
title: Paenibacillus anseongense

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.57702/q318hy38
title: PubFig83

description: A face dataset containing images of 83 individuals.
DOI: 10.13145/bacdive166336.20250331.9.3
title: Paenibacillus yunnanensis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.