cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.4m0022b
title: Data from: Habitat amount drives the functional diversity and nestedness of anuran communities in an Atlantic Forest fragmented landscape

description: [No abstract entered]
description: Relative abundance of
 species by siteRelative abundances of
 species by site. The scientific names of the species are abbreviated. The
 full names are available in Table S2amphib_all_sp_RA.xlsx
DOI: 10.5061/dryad.j2p05q3
title: Data from: Leaf-litter decomposition and macroinvertebrate assemblages along an urban stream gradient in Puerto Rico

description: Urbanization is a major land use form that has large impacts on
 ecosystems. Urban development in the watershed impacts stream ecosystems
 by increasing nutrient and organic matter loads, altering hydrology, and
 reducing biodiversity. Puerto Rico is an ideal location to assess and
 monitor the effects of urbanization on streams, because it is increasingly
 urbanized and streams do not receive inputs of untreated sewage,
 characteristic of many other tropical urban areas. The objective of this
 study was to determine how leaf-litter decomposition and aquatic
 macroinvertebrate assemblages varied along a tropical urban gradient. We
 conducted the study in the Río Piedras watershed, San Juan Metropolitan
 Area, in six low order streams that formed an urban gradient ranging from
 10 to 70% urban land cover. At each stream, we placed six 5g leaf bags of
 Ficus longifolia in three different pools and collected one bag on each
 sampling date. Decomposition rates were fast in forested streams (range
 0.021 – 0.039 day-1) and decreased with increasing urbanization (range
 0.007 – 0.008 day-1). Rates were strongly and negatively correlated with
 percent impervious surface cover (R= 0.81, p=0.01). Functional feeding
 group diversity was higher in forested streams, with the presence of
 shredders. Decomposition rates were significantly and positively
 correlated with functional feeding group diversity and abundance (R= 0.66,
 p= 0.04). Overall, our results show that urbanization affected the
 environment and macroinvertebrate diversity resulting in large negative
 effects on stream ecosystem function.
description: Leaf Decomposition
 DataThe percentage of ash
 free dry mass (%AFDM) remaining for all stream sites throughout the study
 period. The data includes the stream identification, the replicate number
 of the leaf bag, the collection day and date, and the % of AFDM
 remaining.LeafDecompData.xlsxMacroinvertebrate Abundance DataMacroinvertebrate abundance associated to the leaf bags for each stream site. The data includes the count of individuals identified from each stream, leaf pack replicate, and collection day.Macroinverte Abundance.xlsx
DOI: 10.5061/dryad.cp388tm
title: Data from: Performance of primary care in different health care facilities: a cross sectional study of patients’ experiences in Southern Malawi

description: Objective: In most African countries, primary care is delivered through a
 district health system. Many factors, including staffing levels, staff
 experience, availability of equipment and facility management, affect the
 quality of primary care between and within countries. The purpose of this
 study was to assess the quality of primary care in different types of
 public health facilities in Southern Malawi. Study design: This was a
 cross sectional quantitative study. Setting: The study was conducted in 12
 public primary care facilities in Neno, Blantyre and Thyolo districts in
 July 2018. Participants: Patients aged 18 years and above, excluding the
 severely ill, were selected to participate in the study. Primary outcomes:
 We used the Malawian primary care assessment tool to conduct face-to-face
 interviews. ANOVA at 0.05 significance level was performed to compare
 primary care dimension means and total primary care scores. Linear
 regression models at 95% CI were used to assess associations between
 primary care dimension scores, patients’ characteristics and healthcare
 setting. Results: The final number of respondents was 962 representing
 96.1% response rate. Patients in Neno hospitals scored 3.77 points higher
 than those in Thyolo health centers, and 2.87 higher than those in
 Blantyre health centers in total primary care performance. Primary care
 performance in health centers and in hospital clinics was similar in Neno
 (20.9 vs 19.0, p= 0.608) while in Thyolo, it was higher at the hospital
 than at the health centers (19.9 vs 15.2, p&lt;0.001). Urban and rural
 facilities showed a similar pattern of performance. Conclusion: These
 results showed considerable variation in experiences among primary care
 users in the public health facilities in Malawi. Factors such as funding,
 policy and clinic level interventions influence patients’ reports of
 primary care performance. These factors should be further examined in
 longitudinal and experimental settings.
description: Primary care in
 different facilities_pcat3final data
 file_spss_SAV_270718SPSS data file of 962
 respondents for assessment of primary care performance in different types
 of facilities.
DOI: 10.5061/dryad.q2j3161
title: Data from: Phenotype-environment mismatch in metapopulations - implications for the maintenance of maladaptation at the regional scale

description: Maladaptation is widespread in natural populations. However, maladaptation
 has most often been associated with absolute population decline in local
 habitats rather than on a spectrum of relative fitness variation that can
 assist natural populations in their persistence at larger regional scales.
 We report results from a field experiment that tested for relative
 maladaptation between pond habitats with spatial heterogeneity and
 (a)symmetric selection in pH. In the experiment, we quantified relative
 maladaptation in a copepod metapopulation as a mismatch between the mean
 population phenotype and the optimal trait value that would maximize mean
 population fitness under either stable or fluctuating pH environmental
 conditions. To complement the field experiment, we constructed a
 metapopulation model that addressed both relative (distance from the
 optimum) and absolute (negative population growth) maladaptation, with the
 aim of forecasting maladaptation to pH at the regional scale in relation
 to spatial structure (environmental heterogeneity and connectivity) and
 temporal environmental fluctuations. The results from our experiment
 indicated that maladaptation to pH at the regional scale depended on the
 asymmetry of the fitness surface at the local level. The results from our
 metapopulation model revealed how dispersal and (a)symmetric selection can
 operate on the fitness surface to maintain maladaptive
 phenotype-environment mismatch at local and regional scales in a
 metapopulation. Environmental stochasticity resulted in the maintenance of
 maladaptation that was robust to dispersal, but also revealed an
 interaction between the asymmetry in selection and environmental
 correlation. Our findings emphasize the importance of maladaptation for
 planning conservation strategies that can support adaptive potential in
 fragmented and changing landscapes.
description: Field
 experimentResults of the common
 garden field experiment conducted during two consecutive years (2013/2014)
 at Cape Race (NL, Canada). Adult L. minutus survival to acidity was
 measured as [Log10 (Nﬁnal + 1) - Log10 (Ninitial + 1)].Pond pH throughout
 yearspH regime shifts of 108
 ponds between three consecutive years (2013, 2014, 2015) at Cape Race (NL,
 Canada).PondpH_Cape
 Race_NL.xlsx
DOI: 10.5061/dryad.3qc6328
title: Data from: Patterns, dynamics and consequences of microplastic ingestion by the temperate coral, Astrangia poculata

description: Microplastics (less than 5 mm) are a recognized threat to aquatic food
 webs because they are ingested at multiple trophic levels and may
 bioaccumulate. In urban coastal environments, high densities of
 microplastics may disrupt nutritional intake. However, behavioural
 dynamics and consequences of microparticle ingestion are still poorly
 understood. As filter or suspension feeders, benthic marine invertebrates
 are vulnerable to microplastic ingestion. We explored microplastic
 ingestion by the temperate coral Astrangia poculata. We detected an
 average of over 100 microplastic particles per polyp in wild-captured
 colonies from Rhode Island. In the laboratory, corals were fed microbeads
 to characterize ingestion preference and retention of microplastics and
 consequences on feeding behaviour. Corals were fed biofilmed microplastics
 to test whether plastics serve as vectors for microbes. Ingested
 microplastics were apparent within the mesenterial tissues of the
 gastrovascular cavity. Corals preferred microplastic beads and declined
 subsequent offerings of brine shrimp eggs of the same diameter, suggesting
 that microplastic ingestion can inhibit food intake. The corals
 co-ingested Escherichia coli cells with microbeads. These findings detail
 specific mechanisms by which microplastics threaten corals, but also hint
 that the coral A. poculata, which has a large coastal range, may serve as
 a useful bioindicator and monitoring tool for microplastic pollution.
description: Data from: Patterns,
 dynamics and consequences of microplastic ingestion by the temperate
 coral, Astrangia poculataThis is an excel file
 with annotated raw data. Each sheet (tab) is associated with a figure, and
 is named as such.Data from Patterns, dynamics
 and consequences of microplastic ingestion by the temperate coral,
 Astrangia poculata.xlsx
DOI: 10.15468/dl.gtddhy
title: Occurrence Download

description: A dataset containing 4727 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Agrilus planipennis"
 ]
}

 The dataset includes 4727 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001706-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e4cu3v
title: Occurrence Download

description: A dataset containing 190 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Romania",
 "TaxonKey is Tyto alba"
 ]
}

 The dataset includes 190 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001710-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.g66n3h5
title: Data from: Niche construction affects the variability and strength of natural selection

description: Consideration of the properties of the sources of selection potentially
 helps biologists to account for variation in selection. Here we explore
 how the variability of natural selection is affected by organisms that
 regulate the experienced environment through their activities (whether by
 constructing components of their local environments such as nests,
 burrows, or pupal cases, or by choosing suitable resources). Specifically,
 we test the prediction that organism-constructed sources of selection that
 buffer environmental variation will result in reduced variation in
 selection gradients, including reduced variation between (i) years
 (temporal variation), and (ii) locations (spatial variation), and (iii)
 weaker directional selection, relative to non-constructed sources. Using
 compiled datasets of 1045 temporally replicated, 257 spatially replicated,
 and a pooled dataset of 1230 selection gradients, we find compelling
 evidence for reduced temporal variation and weaker selection, in response
 to constructed compared to non-constructed sources, and some evidence for
 reduced spatial variation in selection. These findings, which remained
 robust to alternative datasets, taxa, analytical methods, definitions of
 constructed/non-constructed, and other tests of reliability, suggest that
 organism-manufactured or chosen components of environments may have
 qualitatively different properties from other environmental features.
description: Coding
 ExplanationsExplanations of why the
 selection gradients were coded as either constructed, non-constructed, or
 mixed.Temporal
 AnalysisSelection gradients used
 in the temporal analysis from Clark et al. 2019 in The American
 Naturalist: Niche construction affects the variability and strength of
 selection.Spatial
 AnalysisSelection gradients used
 in the spatial analysis from Clark et al. 2019 in The American Naturalist:
 Niche construction affects the variability and strength of
 selection.Combined
 AnalysisSelection gradients used
 in the combined analysis from Clark et al. 2019 in The American
 Naturalist: Niche construction affects the variability and strength of
 selection.
DOI: 10.5061/dryad.f0163
title: Data from: Genotyping HapSTR loci: phase determination from direct sequencing of PCR products

description: HapSTRs combine information from a microsatellite (or simple tandem
 repeat, STR) with one or more single nucleotide polymorphisms (SNPs) in
 the DNA sequence immediately flanking the STR. These loci may offer
 increased power for the estimation of demographic parameters, but also
 present some challenges for data collection and analysis. We describe a
 process for inferring HapSTR alleles, including the flanking haplotypes,
 STR alleles, and their phase relative to each other, directly from DNA
 sequence electropherograms of PCR products from heterozygous individuals.
 Our approach eliminates the need for more costly and time-consuming
 processes such as cloning or acrylamide gel electrophoresis to separate
 alleles prior to sequencing.
description: Genotyping_HapSTRsArchive of sequence electropherograms and Sequencher file with examples of genotyping HapSTR loci.
DOI: 10.5061/dryad.234
title: Data from: Towards a worldwide wood economics spectrum

description: Wood performs several essential functions in plants, including
 mechanically supporting aboveground tissue, storing water and other
 resources, and transporting sap. Woody tissues are likely to face
 physiological, structural and defensive trade-offs. How a plant optimizes
 among these competing functions can have major ecological implications,
 which have been under-appreciated by ecologists compared to the focus they
 have given to leaf function. To draw together our current understanding of
 wood function, we identify and collate data on the major wood functional
 traits, including the largest wood density database to date (8412 taxa),
 mechanical strength measures and anatomical features, as well as
 clade-specific features such as secondary chemistry. We then show how wood
 traits are related to one another, highlighting functional trade-offs, and
 to ecological and demographic plant features (growth form, growth rate,
 latitude, ecological setting). We suggest that, similar to the manifold
 that tree species leaf traits cluster around the ‘leaf economics
 spectrum’, a similar ‘wood economics spectrum’ may be defined. We then
 discuss the biogeography, evolution and biogeochemistry of the spectrum,
 and conclude by pointing out the major gaps in our current knowledge of
 wood functional traits.
description: Global Wood Density
 DatabasePlease direct all
 correspondence to G. Lopez-Gonzalez
 GlobalWoodDensityDatabase.xls
DOI: 10.15468/dl.5hxq73
title: Occurrence Download

description: A dataset containing 2782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EBCC Atlas of European Breeding Birds",
 "TaxonKey is Crex crex"
 ]
}

 The dataset includes 2782 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001709-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.j1fd7
title: Data from: Data archiving is a good investment

description: Funding agencies are reluctant to support data archiving, even though
 large research funders such as the National Science Foundation (NSF) and
 the National Institutes of Health acknowledge its importance for
 scientific progress. Our quantitative estimates of data reuse indicate
 that ongoing financial investment in data-archiving infrastructure
 provides a high scientific return.
description: PubMed Central reuse of
 GEO datasets deposited in 2007This is the raw data
 behind the analysis. It contains one row for every mention of a 2007 GEO
 dataset in PubMed Central. Each row identifies the mentioned GEO dataset,
 the PubMed Central article that mentions the dataset's accession
 number, whether the authors of the dataset and the attributing article
 overlap, and whether this is considered an instance of third-party data
 reuse.PMC_reuse_of_2007_GEO_datasets.csvAggregate Table DataAggregate table data behind the figures and results in the README associated with the main dataset. Includes Baseline metrics used for extrapolating PubMed Central (PMC) results to PubMed, Number of mentions of a 2007 GEO dataset by authors who submitted the dataset, and Number of mentions of a dataset by authors who DID NOT submit the dataset across 2007-2010.tables.csv
DOI: 10.5061/dryad.05b10
title: Data from: AFLP markers reveal high clonal diversity and extreme longevity in four arctic-alpine key species

description: We investigated the clonal diversity, genet size structure and genet
 longevity in populations of four arctic-alpine plants (Carex curvula,
 Dryas octopetala, Salix herbacea and Vaccinium uliginosum) in order to
 evaluate their persistence under past climatic oscillations and their
 potential resistance to future climate change. The size and number of
 genets was determined with molecular markers (AFLP) using a standardized
 sampling design in several homogenous climax populations across
 arctic-alpine regions in Europe. Genet age was estimated by dividing its
 size by the annual horizontal size increment from in situ growth
 measurements. Clonal diversity differed among species, but was generally
 high with a strongly left-skewed frequency distribution of genet size. The
 largest Carex curvula genet had an estimated minimum age of ca. 4100 years
 and an estimated maximum age of ca. 5000 years, while 84.8 % of the genets
 in this species were less than 200 years old. The oldest genets of Dryas
 octopetala, Salix herbacea and Vaccinium uliginosum were found to be at
 least 500, 450, and 1400 years old, respectively. These results indicate
 that individuals in the studied populations have survived pronounced
 climatic oscillations in the past including the Little Ice Age and
 post-industrial warming. The presence of genets in all size classes and
 the dominance of presumably young individuals suggest continuous
 recruitment over time, a precondition for adaptation to changing
 environmental conditions. Together, persistence and continuous genet
 turnover may ensure maximum ecosystem resilience. Thus, our results
 suggest that long-lived clonal plants in arctic-alpine ecosystems will
 persist despite considerable climatic change.
description: Carex_curvulaAFLP data: Matrix with samples (rows) and markers (columns), 1 indicating presence of AFLP-fragment, 0 indicating absence of AFLP-fragment.Dryas_octopetalaAFLP data: Matrix with samples (rows) and markers (columns), 1 indicates presence of AFLP-fragments, 0 indicates absence of AFLP-fragmentsSalix_herbaceaAFPL data: Matrix with samples (rows) and markers (columns), 1 indicates presence of AFLP-fragments, 0 indicates absence of AFLP-fragmentsVaccinium_uliginosumAFLP data: Matrix with samples (rows) and markers (columns), 1 indicates presence of AFLP-fragments, 0 indicates absence of AFLP-fragments
DOI: 10.5517/ccdc.csd.cc2jjm7y
title: CCDC 2339670: Experimental Crystal Structure Determination

description: Related Article: Chirui Xu, William Orbell, Guilian Wang, Boye Li, Bryan K. Y. Ng, Tai-Sing Wu, Yun-Liang Soo, Zhao-Xue Luan, Kangjian Tang, Xin-Ping Wu, S. C. Edman Tsang, Pu Zhao|2024|J.Mater.Chem.A|12|19018|doi:10.1039/D4TA01689K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mjm71
title: CCDC 2429043: Experimental Crystal Structure Determination

description: Related Article: Shivam Meena, Deepika Thakur, Surya P Tripathi, Rahul Ranjan, Akhilesh Verma|2025|Chem.Commun.|||doi:10.1039/D5CC04935K
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mm77r
title: CCDC 2431554: Experimental Crystal Structure Determination

description: Related Article: Qing Jiang, Tianzuo Wang, Yi Han, Haipeng Wei, Yunfeng Deng, Yanhou Geng, Chunyan Chi|2025|Angew.Chem.,Int.Ed.|64|e202513158|doi:10.1002/anie.202513158
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dchmcy
title: Canadian National Mycological Herbarium

description: The mycological collection holds over 350,000 fungal and fungal plant disease specimens which make it the largest fungarium of non lichenized fungi in Canada. The specimens are used as vouchers for scientific research, scientific names and living fungal cultures maintained in the Canadian Collection of Fungal Cultures (CCFC). Herbarium specimens document the existence of indigenous and invasive species (agents of disease: pathogens, toxigenic species, symbionts, saprophytes and other biodiversity components) in all Canadian provinces and territories, on different types of hosts, at different stages of their life cycles, and during different times of the year. The fungarium also holds many representatives of foreign disease-causing fungi which can be used for comparative purposes. Lichenized fungi (that is to say, those forming lichens) are generally excluded and by written agreement are housed in the lichen section (CANL) of the National Herbarium of Canada (CAN) at the Canadian Museum of Nature.