cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17489606
title: GnRH2 and GnRH3 CDS from Indonesian Freshwater Teleosts

description: This dataset contains the coding sequences (CDS) of Gonadotropin-Releasing Hormone 2 (GnRH2) and Gonadotropin-Releasing Hormone 3 (GnRH3) genes isolated from Indonesian freshwater teleost fishes, including: Osphronemus goramy, Anabas testudineus, Hemibagrus nemurus, Mystus sp., Barbonymus balleroides, Tor tambroides, and Barbonymus gonionotus. A total of ten sequences were obtained. GnRH2 CDS lengths were 84 bp, and GnRH3 CDS were 93 bp.
DOI: 10.6075/j06t0kq1
title: CIL:10526, Toxoplasma gondii. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: 3D-deconvolution
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: Live toxoplasma gondii cell line stably expressing EGFP fused to the to beta II tubulin gene. Image was collected using ABI Deltavision on an Olympus PSF microscope with excitation at 450-490 nm and emission collected at 500-540 nm. Image was collected with a 60X water immersion objective, 1.2 N.A. and detected with a Cool Snap HQ/ICX285 camera. Deconvolved image can be found in 10527.
DOI: 10.6075/j0h41qjq
title: CIL:10521, Toxoplasma gondii RH. In Cell Image Library

description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgMORN1 and mCherryFP-tagged Tgalpha1tubulin. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Captured with CoolSnapHQ/ICX285. Deconvolved stack corresponds to raw data stack: CIL# 10520.
Unpublished image that is similar to images published in PMID: 16518471 and 20140195. See publications for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Processing history: 3D-deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j08p5zp8
title: CIL:10527, Toxoplasma gondii. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: dispersed cells in vitro
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP
Processing history: constrained iterative deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
description: Live toxoplasma gondii cell line stably expressing EGFP fused to the beta II tubulin gene. Image was collected using ABI Deltavision on an Olympus PSF microscope with excitation at 450-490 nm and emission collected at 500-540 nm. Image was collected with a 60X water immersion objective, 1.2 N.A. and detected with a Cool Snap HQ/ICX285 camera. Associated raw data in image 10526.
DOI: 10.6084/m9.figshare.27957549
title: Gao_et_al_Data and Code

description: Fire is a dominant agent of ecosystem transformation worldwide, yet its influence on the ecological stoichiometry that governs fundamental processes from plant production to nutrient cycling and ecosystem stability remains poorly constrained at a global scale. Here, we conducted a global meta-analysis of 2,238 paired observations from 282 studies to quantify fire effects on terrestrial carbon (C), nitrogen (N) and phosphorus (P) pools and their stoichiometric ratios (C:N, C:P, N:P and C:N:P). While ecosystem-level stoichiometry remained homeostatic, we discovered substantial fire-induced shifts within individual ecosystem components. Microbial and soil C:P and N:P ratio of microbial and soil were the most responsive, highlighting a critical reorganization of nutrient capital. These stoichiometric changes were most pronounced following high-severity of frequency fires and particularly those occurring in spring. Furthermore, the magnitude of fire effects was strongly regulated by time since fire and was exacerbated in more productive ecosystems (e.g., those with higher gross productivity) and warmer, wetter climates. Our analysis revealed that post-fire stoichiometric homeostasis at the ecosystem level emerged from compensatory interactions among plant, soil and microbes. We conclude that integrating these key drivers — component-specific responses, climate, and vegetation productivity — into Earth system models is essential for predicting ecosystem biogeochemistry under rapidly changing global fire regimes.
DOI: 10.6084/m9.figshare.27957549.v3
title: Gao_et_al_Data and Code

description: Fire is a dominant agent of ecosystem transformation worldwide, yet its influence on the ecological stoichiometry that governs fundamental processes from plant production to nutrient cycling and ecosystem stability remains poorly constrained at a global scale. Here, we conducted a global meta-analysis of 2,238 paired observations from 282 studies to quantify fire effects on terrestrial carbon (C), nitrogen (N) and phosphorus (P) pools and their stoichiometric ratios (C:N, C:P, N:P and C:N:P). While ecosystem-level stoichiometry remained homeostatic, we discovered substantial fire-induced shifts within individual ecosystem components. Microbial and soil C:P and N:P ratio of microbial and soil were the most responsive, highlighting a critical reorganization of nutrient capital. These stoichiometric changes were most pronounced following high-severity of frequency fires and particularly those occurring in spring. Furthermore, the magnitude of fire effects was strongly regulated by time since fire and was exacerbated in more productive ecosystems (e.g., those with higher gross productivity) and warmer, wetter climates. Our analysis revealed that post-fire stoichiometric homeostasis at the ecosystem level emerged from compensatory interactions among plant, soil and microbes. We conclude that integrating these key drivers — component-specific responses, climate, and vegetation productivity — into Earth system models is essential for predicting ecosystem biogeochemistry under rapidly changing global fire regimes.
DOI: 10.6075/j0z60n6r
title: CIL:10524, Toxoplasma gondii RH. In Cell Image Library

description: Time-lapse of Toxoplasma gondii. A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgIMC1 and mRFP-tagged TgMORN1 (MORN domain containing protein). Formation of daughter cells is visible during time-lapse. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 60X water immersion, 1.2 NA. Filters: EGFP, ex 450-490 em 500-540, mRFP, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 3D stacks of images were collected at 0.6 μ increments in z, every 10 min. The epifluorescence image is a maximum intensity projection of the deconvolved 3D stack at each timepoint. Corresponding raw data in CIL# 10522. Corresponding deconvolved data in CIL# 10523. Corresponding movie: CIL# 10525. 

Unpublished image that is similar to images published in PMID: 16518471 and 20140195. See publications for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy; time lapse microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mRFP1
Processing history: 3D-deconvolution
Data qualification: Processed;spatialmeasurements
DOI: 10.6084/m9.figshare.27957549.v2
title: Gao_et_al_Data and Code

description: Fire is a dominant agent of ecosystem transformation worldwide, yet its influence on the ecological stoichiometry that governs fundamental processes from plant production to nutrient cycling and ecosystem stability remains poorly constrained at a global scale. Here, we conducted a global meta-analysis of 2,238 paired observations from 282 studies to quantify fire effects on terrestrial carbon (C), nitrogen (N) and phosphorus (P) pools and their stoichiometric ratios (C:N, C:P, N:P and C:N:P). While ecosystem-level stoichiometry remained homeostatic, we discovered substantial fire-induced shifts within individual ecosystem components. Microbial and soil C:P and N:P ratio of microbial and soil were the most responsive, highlighting a critical reorganization of nutrient capital. These stoichiometric changes were most pronounced following high-severity of frequency fires and particularly those occurring in spring. Furthermore, the magnitude of fire effects was strongly regulated by time since fire and was exacerbated in more productive ecosystems (e.g., those with higher gross productivity) and warmer, wetter climates. Our analysis revealed that post-fire stoichiometric homeostasis at the ecosystem level emerged from compensatory interactions among plant, soil and microbes. We conclude that integrating these key drivers — component-specific responses, climate, and vegetation productivity — into Earth system models is essential for predicting ecosystem biogeochemistry under rapidly changing global fire regimes.
DOI: 10.6075/j0sq8zk2
title: CIL:10518, Toxoplasma gondii RH. In Cell Image Library

description: DIC z-series of extracellular Toxoplasma gondii. T. gondii tachyzoites (strain RH) were cultivated in human foreskin fibroblast cells and parasites were harvested soon after emerging from host cells. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 60X water immersion, 1.2 NA. Captured with CoolSnapHQ/ICX285.

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Data qualification: Raw;spatialmeasurements
DOI: 10.6075/j0028qnc
title: CIL:10517, Toxoplasma gondii RH. In Cell Image Library

description: DIC z-series of extracellular Toxoplasma gondii. T. gondii tachyzoites (strain RH) were cultivated in human foreskin fibroblast cells and parasites were harvested soon after emerging from host cells. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 60X water immersion, 1.2 NA. Captured with CoolSnapHQ/ICX285.

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: differential interference contrast microscopy
Parameter imaged: optical path length gradient
Source of contrast: boundaries between regions with different refractive index
Data qualification: Raw;spatialmeasurements
DOI: 10.6075/j0445km2
title: CIL:10493, Toxoplasma gondii RH. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy; differential interference contrast microscopy; time lapse microscopy
Parameter imaged: fluorescence emission; optical path length gradient
Source of contrast: distribution of a specific protein; boundaries between regions with different refractive index
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCam2 (calmodulin-like protein) and mCherry-tagged TgCentrin2. 36 timepoints. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 60X water immersion, 1.2 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 
Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
DOI: 10.5281/zenodo.17467028
title: RE-SAMPLE GEM Anonymized Patient Dataset

description: Anonymized data from Fondazione Policlinico Universitario Agostino Gemelli (GEM). This dataset is the result of the RE-SAMPLE project’s commitment to providing data for research in accordance with the FAIR (Findable, Accessible, Interoperable, and Reusable) principles. The repository contains seven anonymized CSV files that organizations can request to access via Zenodo. However, before access is granted, a request form will be sent to the recipient in accordance with the RE-SAMPLE Security and Data Protection Policies. More information about the data schema and the access request process can be found in the corresponding Zenodo repository.
DOI: 10.6075/j0hx1bv4
title: CIL:1049, Caenorhabditis elegans, muscle cell. In Cell Image Library

description: The purpose of the dataset C. elegans muscle aging is to deduce the age of the nemathode based on images of muscles. Images of C. elegans were taken at different chronological ages. This image is part of the day 1 data set. Note that the morphological and chronological ages are not fully correlated due to the variability among individuals even though the individuals are genetically identical. The source for the dataset is Laboratory of Genetics/NIA/NIH.
description: Relation to intact cell: whole mounted tissue
Item type: recorded image
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of epitope
Visualization methods: phalloidin
Processing history: unprocessed raw data
description: C. elegans muscle age is a data set of fluorescence 20X microscopy images of C. elegans nematodes stained with phalloidin to visualize actin in muscles at different ages (1,2,4, and 8). Note that the data sets for each age can be found by searching for a featured image from each set: CIL 1005, 1057, 1105, and 1265, respectively.
DOI: 10.5281/zenodo.17467027
title: RE-SAMPLE GEM Anonymized Patient Dataset

description: Anonymized data from Fondazione Policlinico Universitario Agostino Gemelli (GEM). This dataset is the result of the RE-SAMPLE project’s commitment to providing data for research in accordance with the FAIR (Findable, Accessible, Interoperable, and Reusable) principles. The repository contains seven anonymized CSV files that organizations can request to access via Zenodo. However, before access is granted, a request form will be sent to the recipient in accordance with the RE-SAMPLE Security and Data Protection Policies. More information about the data schema and the access request process can be found in the corresponding Zenodo repository.
DOI: 10.6075/j0222szk
title: CIL:10488, Toxoplasma gondii RH. In Cell Image Library

description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged Tgbeta3-tubulin. 50 timepoints in which daughter formation is visible. Images overlaid with DIC. Images acquired using API DeltaVision on an Olympus IX70 inverted microscope. Objective: Olympus 60X water immersion, 1.2 NA. Filters: GFP, ex 450-490 em 500-540. Captured with CoolSnapHQ/ICX285. 3D stack is raw data corresponding to deconvolved stack: CIL# 10489.
Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy; differential interference contrast microscopy
Parameter imaged: fluorescence emission; optical path length gradient
Source of contrast: distribution of a specific protein; boundaries between regions with different refractive index
Visualization methods: EGFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0ww7gv4
title: CIL:10516, Toxoplasma gondii RH. In Cell Image Library

description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0125rsr
title: CIL:10513, Toxoplasma gondii RH. In Cell Image Library

description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 3D stack corresponds to deconcolved data stack: CIL# 10514.

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0d21wqd
title: CIL:10511, Toxoplasma gondii RH. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy; differential interference contrast microscopy
Parameter imaged: fluorescence emission; optical path length gradient
Source of contrast: distribution of a specific protein; boundaries between regions with different refractive index
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images overlaid with DIC. Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. Data stack corresponds to CIL# 10512.
Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
DOI: 10.6075/j0mg7nqs
title: CIL:10508, Toxoplasma gondii RH. In Cell Image Library

description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements;intensitiesquantitation
DOI: 10.6075/j0p26x8c
title: CIL:10496, Toxoplasma gondii RH. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Processing history: 3D-deconvolution
Data qualification: Processed;spatialmeasurements;intensitiesquantitation
description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 3D Deconvolved stack corresponds to raw data stacks: CIL# 10495 and 10494. 

Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.
DOI: 10.6075/j0td9wgg
title: CIL:10495, Toxoplasma gondii RH. In Cell Image Library

description: Preparation: living tissue
Relation to intact cell: whole mounted tissue
Item type: recorded image; charge coupled device (CCD)
Imaging mode: fluorescence microscopy
Parameter imaged: fluorescence emission
Source of contrast: distribution of a specific protein
Visualization methods: EGFP; mCherryFP
Data qualification: Raw;spatialmeasurements
description: A monolayer of human foreskin fibroblast cells was infected with Toxoplasma gondii expressing EGFP-tagged TgCentrin2 and mCherry-tagged TgIMC1 (innermembrane complex scaffold protein). Images acquired using API DeltaVision on a Olympus IX70 inverted microscope. Objective: Olympus 100X oil immersion, 1.35 NA. Filters: EGFP, ex 450-490 em 500-540, mCherry, ex 555-592 em 600-665. Dichromatic mirror: Chroma 89021. Captured with CoolSnapHQ/ICX285. 3D stack corresponds to raw data stack with DIC: CIL# 10494 and deconvolved data stack: CIL# 10496. 
Unpublished image that is similar to images published in PMID: 16518471. See publication for other experimental details.