cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.22682689
title: Supplementary Material for: Methods and software to analyze gene-environment interactions under a case-mother - control-mother design with partially missing child genotype

description: Introduction: The case-mother - control-mother design allows to study fetal and maternal genetic factors together with environmental exposures on early-life outcomes. Mendelian constraints and conditional independence between child genotype and environmental factors enabled semiparametric likelihood methods to estimate logistic models with greater efficiency than standard logistic regression. Difficulties in child genotype collection require methods handling missing child genotype. Methods: We review a stratified retrospective likelihood and two semiparametric likelihood approaches: a prospective one and a modified retrospective one, the latter either modeling the maternal genotype as a function of covariates or leaving their joint distribution unspecified (robust version). We also review software implementing these modelling alternatives, compare their statistical properties in a simulation study, and illustrate their application, focusing on gene-environment interactions and partially missing child genotype. Results; The robust retrospective likelihood provides generally unbiased estimates, with standard errors only slightly larger than when modelling maternal genotype based on exposure. The prospective likelihood encounters maximization problems. In the application to the association of small-for-gestational-age babies with CYP2E1 and drinking water disinfection by-products, the retrospective likelihood allowed a full array of covariates, while the prospective likelihood was limited to few covariates. Conclusion: We recommend the robust version of the modified retrospective likelihood.
DOI: 10.6084/m9.figshare.22682689.v1
title: Supplementary Material for: Methods and software to analyze gene-environment interactions under a case-mother - control-mother design with partially missing child genotype

description: Introduction: The case-mother - control-mother design allows to study fetal and maternal genetic factors together with environmental exposures on early-life outcomes. Mendelian constraints and conditional independence between child genotype and environmental factors enabled semiparametric likelihood methods to estimate logistic models with greater efficiency than standard logistic regression. Difficulties in child genotype collection require methods handling missing child genotype. Methods: We review a stratified retrospective likelihood and two semiparametric likelihood approaches: a prospective one and a modified retrospective one, the latter either modeling the maternal genotype as a function of covariates or leaving their joint distribution unspecified (robust version). We also review software implementing these modelling alternatives, compare their statistical properties in a simulation study, and illustrate their application, focusing on gene-environment interactions and partially missing child genotype. Results; The robust retrospective likelihood provides generally unbiased estimates, with standard errors only slightly larger than when modelling maternal genotype based on exposure. The prospective likelihood encounters maximization problems. In the application to the association of small-for-gestational-age babies with CYP2E1 and drinking water disinfection by-products, the retrospective likelihood allowed a full array of covariates, while the prospective likelihood was limited to few covariates. Conclusion: We recommend the robust version of the modified retrospective likelihood.
DOI: 10.34740/kaggle/dsv/5504704
title: AutoXGB
DOI: 10.5281/zenodo.7749239
title: A multispectral UAV Imagery dataset of wheat, soybean, and barley crops in East Kazakhstan

description: This study introduces a dataset of crop imagery captured during the 2022 growing season in the Eastern Kazakhstan region. The images were acquired using a multispectral camera mounted on an unmanned aerial vehicle (DJI Phantom 4). The agricultural land, encompassing 27 hectares and cultivated with wheat, barley, and soybean, was subjected to five aerial multispectral photography sessions throughout the growing season. This facilitated thorough monitoring of the most important phenological stages of crop development in the experimental design, which consisted of 27 plots, each covering one hectare. The collected imagery underwent enhancement and expansion, integrating a sixth band that embodies the normalized difference vegetation index (NDVI) values, in conjunction with the original five multispectral bands (Blue, Green, Red, Red Edge and Near Infrared Red). This amplification enables a more effective evaluation of vegetation health and growth, rendering the enriched dataset a valuable resource for the progression and validation of crop monitoring and yield prediction models, as well as for the exploration of precision agriculture methodologies.
description: This research was funded by the Science Committee of the Ministry of Science and Higher Education of the Republic of Kazakhstan, grant number AP09259379.
DOI: 10.5281/zenodo.7748273
title: A multispectral UAV Imagery dataset of wheat, soybean, and barley crops in East Kazakhstan

description: This study introduces a dataset of crop imagery captured during the 2022 growing season in the Eastern Kazakhstan region. The images were acquired using a multispectral camera mounted on an unmanned aerial vehicle (DJI Phantom 4). The agricultural land, encompassing 27 hectares and cultivated with wheat, barley, and soybean, was subjected to five aerial multispectral photography sessions throughout the growing season. This facilitated thorough monitoring of the most important phenological stages of crop development in the experimental design, which consisted of 27 plots, each covering one hectare. The collected imagery underwent enhancement and expansion, integrating a sixth band that embodies the normalized difference vegetation index (NDVI) values, in conjunction with the original five multispectral bands (Blue, Green, Red, Red Edge and Near Infrared Red). This amplification enables a more effective evaluation of vegetation health and growth, rendering the enriched dataset a valuable resource for the progression and validation of crop monitoring and yield prediction models, as well as for the exploration of precision agriculture methodologies.
description: This research was funded by the Science Committee of the Ministry of Science and Higher Education of the Republic of Kazakhstan, grant number AP09259379.
DOI: 10.6084/m9.figshare.22682686
title: TM1_H3K4me3_D09.bed

description: test file
DOI: 10.6084/m9.figshare.22682686.v1
title: TM1_H3K4me3_D09.bed

description: test file
DOI: 10.5281/zenodo.7748792
title: A multispectral UAV Imagery dataset of wheat, soybean, and barley crops in East Kazakhstan

description: This study introduces a dataset of crop imagery captured during the 2022 growing season in the Eastern Kazakhstan region. The images were acquired using a multispectral camera mounted on an unmanned aerial vehicle (DJI Phantom 4). The agricultural land, encompassing 27 hectares and cultivated with wheat, barley, and soybean, was subjected to five aerial multispectral photography sessions throughout the growing season. This facilitated thorough monitoring of the most important phenological stages of crop development in the experimental design, which consisted of 27 plots, each covering one hectare. The collected imagery underwent enhancement and expansion, integrating a sixth band that embodies the normalized difference vegetation index (NDVI) values, in conjunction with the original five multispectral bands (Blue, Green, Red, Red Edge and Near Infrared Red). This amplification enables a more effective evaluation of vegetation health and growth, rendering the enriched dataset a valuable resource for the progression and validation of crop monitoring and yield prediction models, as well as for the exploration of precision agriculture methodologies.
description: This research was funded by the Science Committee of the Ministry of Science and Higher Education of the Republic of Kazakhstan, grant number AP09259379.
DOI: 10.5281/zenodo.7748791
title: A multispectral UAV Imagery dataset of wheat, soybean, and barley crops in East Kazakhstan

description: This study introduces a dataset of crop imagery captured during the 2022 growing season in the Eastern Kazakhstan region. The images were acquired using a multispectral camera mounted on an unmanned aerial vehicle (DJI Phantom 4). The agricultural land, encompassing 27 hectares and cultivated with wheat, barley, and soybean, was subjected to five aerial multispectral photography sessions throughout the growing season. This facilitated thorough monitoring of the most important phenological stages of crop development in the experimental design, which consisted of 27 plots, each covering one hectare. The collected imagery underwent enhancement and expansion, integrating a sixth band that embodies the normalized difference vegetation index (NDVI) values, in conjunction with the original five multispectral bands (Blue, Green, Red, Red Edge and Near Infrared Red). This amplification enables a more effective evaluation of vegetation health and growth, rendering the enriched dataset a valuable resource for the progression and validation of crop monitoring and yield prediction models, as well as for the exploration of precision agriculture methodologies.
description: This research was funded by the Science Committee of the Ministry of Science and Higher Education of the Republic of Kazakhstan, grant number AP09259379.
DOI: 10.5281/zenodo.7857872
title: Unofficial CodeSearchNet Dataset

description: This is a backup for CodeSearchNet dataset. The official repo in GitHub has been archived and the dataset cannot be downloaded any more. We upload this dataset for research purpose, especially for reproducing experiments that used this dataset before and CodeXGLUE benchmark.
DOI: 10.5281/zenodo.7857871
title: Unofficial CodeSearchNet Dataset

description: This is a backup for CodeSearchNet dataset. The official repo in GitHub has been archived and the dataset cannot be downloaded any more. We upload this dataset for research purpose, especially for reproducing experiments that used this dataset before and CodeXGLUE benchmark.
DOI: 10.4121/22047680
title: Data for the publication: Hysteresis and dichotomous mechanics in cyclic crushing failure of confined freshwater columnar ice

description: These data refer to the test campaign conducted at the Delft University of Technology Ice Laboratory between 4 July and 3 October 2022. The "Optical apparatus with Linear Actuator loading Frame" (OLAF) was used to conduct cyclic compressive crushing of freshwater columnar ice. Detailed explanations of the test setup, test matrix, and test results are provided in the publication in Cold Regions Science and Technology. Refer to the README.txt file contained in the data for more information. Contact Cody C. Owen (c.c.owen@tudelft.nl) for additional information.
DOI: 10.4121/22047680.v2
title: Data for the publication: Hysteresis and dichotomous mechanics in cyclic crushing failure of confined freshwater columnar ice

description: These data refer to the test campaign conducted at the Delft University of Technology Ice Laboratory between 4 July and 3 October 2022. The "Optical apparatus with Linear Actuator loading Frame" (OLAF) was used to conduct cyclic compressive crushing of freshwater columnar ice. Detailed explanations of the test setup, test matrix, and test results are provided in the publication in Cold Regions Science and Technology. Refer to the README.txt file contained in the data for more information. Contact Cody C. Owen (c.c.owen@tudelft.nl) for additional information.
DOI: 10.6084/m9.figshare.22682721.v1
title: Age-associated DNA methylation changes in <i>Xenopus</i> frogs

description: Age-associated changes in DNA methylation have been characterized across various animals, but not yet in amphibians, which are of particular interest because they include widely studied model organisms. In this study, we present clear evidence that the aquatic vertebrate species <i>Xenopus tropicalis</i> displays patterns of age-associated changes in DNA methylation. We have generated whole-genome bisulfite sequencing (WGBS) profiles from skin samples of nine frogs representing young, mature, and old adults and characterized the gene- and chromosome-scale DNA methylation changes with age. Many of the methylation features and changes we observe are consistent with what is known in mammalian species, suggesting that the mechanism of age-related changes is conserved. Moreover, we selected a few thousand age-associated CpG sites to build an assay based on targeted DNA methylation analysis (TBSseq) to expand our findings in future studies involving larger cohorts of individuals. Preliminary results of a pilot TBSeq experiment recapitulate the findings obtained with WGBS setting the basis for the development of an epigenetic clock assay. The results of this study will allow us to leverage the unique resources available for <i>Xenopus</i> to study how DNA methylation relates to other hallmarks of ageing.
DOI: 10.6084/m9.figshare.22682721
title: Age-associated DNA methylation changes in <i>Xenopus</i> frogs

description: Age-associated changes in DNA methylation have been characterized across various animals, but not yet in amphibians, which are of particular interest because they include widely studied model organisms. In this study, we present clear evidence that the aquatic vertebrate species <i>Xenopus tropicalis</i> displays patterns of age-associated changes in DNA methylation. We have generated whole-genome bisulfite sequencing (WGBS) profiles from skin samples of nine frogs representing young, mature, and old adults and characterized the gene- and chromosome-scale DNA methylation changes with age. Many of the methylation features and changes we observe are consistent with what is known in mammalian species, suggesting that the mechanism of age-related changes is conserved. Moreover, we selected a few thousand age-associated CpG sites to build an assay based on targeted DNA methylation analysis (TBSseq) to expand our findings in future studies involving larger cohorts of individuals. Preliminary results of a pilot TBSeq experiment recapitulate the findings obtained with WGBS setting the basis for the development of an epigenetic clock assay. The results of this study will allow us to leverage the unique resources available for <i>Xenopus</i> to study how DNA methylation relates to other hallmarks of ageing.
DOI: 10.5519/qd.5m95g5h7
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (2290 records)
DOI: 10.17894/ucph.36c855e0-0084-417f-bdea-ef372df5d109
title: The eMPL and one-fold integral expressions for two three-loop elliptic ladder integrals
DOI: 10.5281/zenodo.7642820
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: DIPF | Leibniz-Institut für Bildungsforschung und Bildungsinformation
DOI: 10.5281/zenodo.7643135
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Eine neue Version wurde freigegeben.
DOI: 10.5281/zenodo.7858119
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Im Projekt „Indikatoren für kulturelle Bildung (InKuBi)“ vom DIPF | Leibniz-Institut für Bildungsforschung und Bildungsinformation wird ein Berichtssystem für kulturelle Bildung entwickelt, das sich am nationalen Bildungsbericht orientiert. Dadurch sollen die Möglichkeiten ausgelotet werden, diesen bislang kaum indikatorisierten Bereich des Bildungsgeschehens in Deutschland dauerhaft datengestützt zu beobachten („Systemmonitoring“). Auf dieser Seite sind die R-Skripte verfügbar, mit denen sich alle Analysen aus B2 sowie aus allen D-Indikatoren reproduzieren lassen. Zur Reproduktion sind außerdem die Daten von RemoteNEPS erforderlich. Falls Ihnen Ungereimtheiten in den Skripten auffallen sollten, bitten wir Sie, uns dies mitzuteilen (Kontakt: j.zhang@dipf.de).
DOI: 10.5281/zenodo.7848601
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Eine neue Version wurde freigegeben.
DOI: 10.5281/zenodo.7858113
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Eine neue Version wurde freigegeben.
DOI: 10.5281/zenodo.7642819
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Im Projekt „Indikatoren für kulturelle Bildung (InKuBi)“ vom DIPF | Leibniz-Institut für Bildungsforschung und Bildungsinformation wird ein Berichtssystem für kulturelle Bildung entwickelt, das sich am nationalen Bildungsbericht orientiert. Dadurch sollen die Möglichkeiten ausgelotet werden, diesen bislang kaum indikatorisierten Bereich des Bildungsgeschehens in Deutschland dauerhaft datengestützt zu beobachten („Systemmonitoring“). Auf dieser Seite sind die R-Skripte verfügbar, mit denen sich alle Analysen aus B2 sowie aus allen D-Indikatoren reproduzieren lassen. Zur Reproduktion sind außerdem die Daten von RemoteNEPS erforderlich. Falls Ihnen Ungereimtheiten in den Skripten auffallen sollten, bitten wir Sie, uns dies mitzuteilen (Kontakt: j.zhang@dipf.de).
DOI: 10.5281/zenodo.7858107
title: Analyseskripte für InKuBi – Indikatoren für kulturelle Bildung

description: Eine neue Version wurde freigegeben.
DOI: 10.57826/keen/1ysskp
title: Flow Regime Classification Image Sequences

description: This dataset contains sequences of images and process data for the flow regime classification purpose.
DOI: 10.5525/gla.researchdata.1426
title: British Seabird Prey Database

description: This data base was created as part of the Marine Ecosystem Research Programme, funded by the Natural Environment Research Council (NERC) and the Department for Environment, Food and Rural Affairs (Defra), that aimed to integrate existing and new marine data sets with current models of marine ecosystem services to further our knowledge and understanding of the UK marine ecosystems. The aim of the Seabird Prey Date Base was to collate a new data set with all known information on prey consumed by seabirds breeding in the British Isles.
DOI: 10.34740/kaggle/dsv/5402921
title: Brest_Cancer_data
DOI: 10.17632/t8wndpc3jc.1
title: RNA-Seq, ER alpha ChIP-Seq, and ZNF217 CUT&RUN data

description: These files contain the genes differentially expressed and differentially occupied by ER alpha at their regulatory elements in a ZNF217- and NRG1-dependent manner. Additionally, they also contain genes bound by ZNF217 in their regulatory elements in ER alpha-dependent in a NRG1-dependent manner.
DOI: 10.5281/zenodo.7852280
title: Nova outburst

description: Collection of certified trajectories, covering a wide range of nova outbursts. Every trajectory comes with the selected initial abundances of the accreted material and other key information, such as the reference of the publication, the accretion rate, the accreting white dwarf mass and its composition. <strong>FREQUENTLY ASKED QUESTIONS</strong> <strong>Q1: What are the main assumptions concerning the initial abundances in the Jose_Hernanz_1998 folder?</strong> A1: For simplicity, it is assumed pre-enriched, accreted material with a composition corresponding to 50% solar (from Lodders 2009) and 50% outer layers of the WD substrate (from Ritossa et al. 1996). <strong>Q2: Can I use these trajectories for nuclear sensitivity studies and/or to compute ejected stellar yields?</strong> A2: These trajectories can be used for nuclear sensitivity studies, but they cannot be used to compute stellar yields.
DOI: 10.5281/zenodo.6406838
title: Nova outburst

description: Collection of certified trajectories, covering a wide range of nova outbursts. Every trajectory comes with the selected initial abundances of the accreted material and other key information, such as the reference of the publication, the accretion rate, the accreting white dwarf mass and its composition. <strong>FREQUENTLY ASKED QUESTIONS</strong> <strong>Q1: What are the main assumptions concerning the initial abundances in the Jose_Hernanz_1998 folder?</strong> A1: For simplicity, it is assumed pre-enriched, accreted material with a composition corresponding to 50% solar (from Lodders 2009) and 50% outer layers of the WD substrate (from Ritossa et al. 1996). <strong>Q2: Can I use these trajectories for nuclear sensitivity studies and/or to compute ejected stellar yields?</strong> A2: These trajectories can be used for nuclear sensitivity studies, but they cannot be used to compute stellar yields.
DOI: 10.17632/7gt53wtf6c.1
title: Author keywords by dentistry authors affiliated with Brazilian institutions: data from Web of Science and Scopus 

description: Through the scientific mapping of keywords by dentistry authors affiliated with Brazilian institutions, we identified the trends and evolution of the research themes in the field using data collected from scientific publications in the area indexed in the Web of Science and Scopus databases between 2012 and 2021, aided by the Bibliometrix tool
DOI: 10.17632/rw4b2zdk95.1
title: A Benchmark Dataset for Printed Meitei/Meetei Script Character Recognition

description: The Manipuri language is the official language of the Indian state of Manipur. The language belongs to the Tibeto-Burman family of languages. The dataset contains scanned 824 pages of printed documents, along with binarized images, text files, and XML files for each raw image. It also includes 51,460 isolated character samples, composed of 27 consonants, 7 half-consonants, 8 vowels, and 10 numerical. This dataset could be used not only for optical character recognition (OCR) research but also in the different research areas of natural language processing (NLP).
DOI: 10.5281/zenodo.7852263
title: Weak s-process

description: Collection of certified trajectories, covering a wide range of weak s-process conditions. Every trajectory comes with the selected initial abundances and other key information, such as the reference of the publication, the stellar region from where it was extracted, the mass of the star and its metallicity. <strong>FREQUENTLY ASKED QUESTIONS</strong> <strong>Q: Can I use these trajectories for nuclear sensitivity studies and/or to compute ejected stellar yields?</strong> A: These trajectories can be used for nuclear sensitivity studies, but they cannot be used to compute stellar yields.
DOI: 10.5281/zenodo.6412561
title: Weak s-process

description: Collection of certified trajectories, covering a wide range of weak s-process conditions. Every trajectory comes with the selected initial abundances and other key information, such as the reference of the publication, the stellar region from where it was extracted, the mass of the star and its metallicity. <strong>FREQUENTLY ASKED QUESTIONS</strong> <strong>Q: Can I use these trajectories for nuclear sensitivity studies and/or to compute ejected stellar yields?</strong> A: These trajectories can be used for nuclear sensitivity studies, but they cannot be used to compute stellar yields.
DOI: 10.4121/7a5cb19f-cbfe-4b05-a6a8-758f4be16b1b.v2
title: Data underlying the research of Awareness of FH among physicians in northern regions of Saudi Arabia

description: Cross sectional study conducted to assessing awareness of physicians regarding Familial hypercholesterolemia (FH) in northern regions of Saudi Arabia.