cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.71f99/3
title: Genetic_AND_metric_distance_per_cluster

description: Pairwise Genetic and Matrix distances among localities within each genetic groups (EUR,ASI, ME) to test for IBD
DOI: 10.5061/dryad.751cv/1
title: Felidae_SNPmatrix_Dryad
DOI: 10.5061/dryad.7f368/1
title: Fournier-Leveletal2016_JEB_DataArchive

description: Data archive and analysis script in the R programming language
DOI: 10.5061/dryad.7g6v3/1
title: Carbon storage in exurban residential land in SE Michigan

description: Included are field and GIS-derived data related to C storage in exurban yards in Southeastern MI, USA. Thorough descriptions of tabs, columns, units and variable codes are included in the excel spreadsheet.
DOI: 10.5061/dryad.7h4j4/1
title: Trait codings for BiSSE analyses

description: Excel file of trait codings for the four traits used in our BiSSE analyses (pollination syndrome, fruit type, Andean presence, elevation).
DOI: 10.5061/dryad.7h4j4/2
title: Plastid DNA alignment

description: Phylip file of final alignment used for phylogeny inference. See partition file, also included.
DOI: 10.5061/dryad.7h4j4/3
title: DNA alignment partitioning scheme

description: Partitioning scheme for plastid DNA alignment
DOI: 10.5061/dryad.7h4j4/4
title: Paleoelevation of the Andes

description: Data points for model of paleoelevation of the Andes through time which was used in paleoenvironmental-dependency analyses.
DOI: 10.5061/dryad.9gr00/1
title: Mating Trial Data
DOI: 10.5061/dryad.c75j9/1
title: S1 Blender setup example for Alligator mississippiensis
DOI: 10.5061/dryad.c75j9/2
title: S2 Blender setup example for Buteo buteo
DOI: 10.5061/dryad.c867b.1
title: Data from: Temporal variation in antibiotic environments slows down resistance evolution in pathogenic Pseudomonas aeruginosa
DOI: 10.5061/dryad.f6g68/5
title: Local Adaptation

description: Local adaptation data. Fecundity of hosts from the Co-passaged treatment paired with sympatric and allopatric parasites from the Co-passaged treatment. A “1” in the “Sympatric” column indicates a sympatric pairing; “0” indicates allopatric. “Line_host” and “Line_parasite” indicate the replicate lineages of host and parasite, respectively, combined in the assay. “Replicate” identifies the 15 hermaphrodites assayed for fecundity per pairing. The number of offspring produced by each hermaphrodite is reported in the column “Offspring.”
DOI: 10.5061/dryad.gm700/1
title: Demographics_Participants

description: Demographics of the participants
DOI: 10.5061/dryad.gm700/2
title: P300_Latency

description: P300 latency (ms) obtained in two assessment conditions ("without noise" and "with noise") and the values of the difference between conditions ("with noise" minus "without noise").
DOI: 10.5061/dryad.gm700/3
title: P300_Amplitude

description: P300 amplitude (mV) obtained in two assessment conditions ("without noise" and "with noise") and the values of the difference between conditions ("with noise" minus "without noise").
DOI: 10.5061/dryad.h8fp2/2
title: Geographical coordinates of individual Helleborus foetidus plants sampled
DOI: 10.5061/dryad.hm064/1
title: Raw data for island fertilization paper

description: All raw data for plants, soil microbes, and ecosystem properties for island fertilization paper.
DOI: 10.5061/dryad.hn34m/1
title: Figure 1

description: Fluorescence in situ hybridization (FISH) in the metaphase chromosomes of snappers species highlighting the chromosomal location of 18S rDNA (red) and 5S rDNA (green) sites (left column) and of hisDNA H3 (red) sites (right column). Chromosomes were counterstained with DAPI (blue). Bar=5μm.
DOI: 10.5061/dryad.hn34m/2
title: Figure 2

description: Fluorescence in situ hybridization (FISH) in the metaphase chromosomes of snappers species,hybridized with Rex1 (green) and Rex3 (red) probes. Chromosomes were counterstained with DAPI (blue). Bar = 5μm.
DOI: 10.5061/dryad.n3r2s/1
title: F2AC_mapping_family_trait_data

description: Phenotype trait data for an F2 mapping family from a reciprocal cross between Senecio aethnensis and S. chrysanthemifolius.
DOI: 10.5061/dryad.n3r2s/2
title: Etna_Senecio_codominant_genotypes

description: Codominant simple sequence repeat (SSR) and indel marker genotype data for wild sampled Senecio aethnensis and S. chrysanthemifolius.
DOI: 10.5061/dryad.n3r2s/3
title: Etna_Senecio_dominant_genotypes

description: Dominant amplified fragment length polymorphism (AFLP) marker genotype data for wild sampled Senecio aethnensis and S. chrysanthemifolius.
DOI: 10.5061/dryad.n3r2s/4
title: Etna_Senecio_trait_data

description: Phenotypic trait data for wild sampled Senecio aethnensis and S. chrysanthemifolius.
DOI: 10.5061/dryad.n3s7d/2
title: Data and scripts - Archive Volume 2

description: Volume 2 of a split zip archive
DOI: 10.5061/dryad.n3s7d/3
title: Data and scripts - Archive Volume 3

description: Volume 3 of a split zip archive
DOI: 10.5061/dryad.n3s7d/4
title: Data and scripts - Archive Volume 4

description: Volume 4 of a split zip archive
DOI: 10.5061/dryad.nv33s/1
title: Transcontinental latitudinal variation in House Wren songs-Data set

description: Data set used for analysis of latitudinal variation in complexity and performance measures of House Wren songs. This contains data of 358 male House Wren songs collected from 281 locations across Americas. Songs were analysed using Praat. Statistical analysis was done using SPSS 23.
DOI: 10.5061/dryad.qk826/2
title: Lu_poplar GA raw data
DOI: 10.5061/dryad.rd250.1
title: Data from: Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua
DOI: 10.5061/dryad.rd250.2
title: Data from: Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua
DOI: 10.5061/dryad.rd250.2/1.2
title: SNP_info

description: This tab-separated file contains a complete list of the SNPs analyzed in the study. For each SNP we provide the linkage group and specific linkage map position (where available), the accession reference ID (dbSNP), the original publication for the SNP discovery (source), and any miscellaneous notes.
DOI: 10.5061/dryad.rd250.2/2.2
title: Individual_info_and_genotypes

description: This tab-delimited file contains information on the sampling location and time, the available demographic data, and the observed SNP genotypes for all individuals analyzed in the study. See the readme file for descriptions of the variables. In the updated file, the weight data for the Icelandic samples have been corrected from grams to kilograms, and number-based sex encoding for these same samples have been changed to M and F. For the Icelandic samples the maturity key used is as follows: 1 is a resting fish, 2-6 indicates a maturing fish, &gt;6 (e.g. 22) means actively spawning.
DOI: 10.5061/dryad.rd250.2/3.2
title: Genepop_GreenlandIcelandCanada

description: The SNP genotype data from file "Individual_info_and_genotypes.txt" presented in Genepop format.
DOI: 10.5061/dryad.rd250.2/4.2
title: EnvironmentalData_Greenland

description: This tab-delimeted file contains the environmental data used in the BayEnv analysis of environment-allele frequency correlations. See the readme file for details.
DOI: 10.5061/dryad.s0qc1/3
title: Data 2

description: In the data folder the reader will find 3 subfolders, one for each experiment described in the experiment. In each folder the reader will find the data_file for each figure of the manuscript.
DOI: 10.5061/dryad.s0qc1/4
title: SupplementaryData

description: Raw data for Experiment 1 (Exploration experiment) Fig.1
DOI: 10.5061/dryad.sj8vk/1
title: Maximum clade credibility tree for the terapontid phylogeny

description: Maximum clade credibility tree for the terapontid phylogeny (nexus format)
DOI: 10.5061/dryad.sj8vk/2
title: 500 BEAST generated trees

description: 500 BEAST generated trees for Terapontidae (pruned of outgroups)
DOI: 10.5061/dryad.sj8vk/3
title: Terapontid species' tooth shape (anterior perspective)

description: TPS shape files for terapontid species' tooth shape (anterior perspective)
DOI: 10.5061/dryad.sj8vk/4
title: Terapontid species' tooth shape (lateral perspective)

description: TPS shape files for terapontid species' tooth shape (lateral perspective)
DOI: 10.5061/dryad.vf345/1
title: 12SAO_12SMARSMINI_Amplicon_sequences_all_samples

description: Filtered NGS sequences of 12SAO and 12SMarsMini amplicons from Layers 1-6 (all subsamples and extracts).
DOI: 10.5061/dryad.0f8q1/3
title: F1T_coverage_MethLevels

description: MethyPipe input data sons testis with coverage, raw methylation levels. Columns: scaffold, starting position, strand, CpG, methylation level, coverage
DOI: 10.5061/dryad.0f8q1/4
title: Venn_data_genes_table_F0LF1LF1T_withGO

description: DMRs and GO results
DOI: 10.5061/dryad.11p3v/1
title: Willow grouse autosomal consensus sequence

description: Willow grouse autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (22) and maximum read depth (-D) set to twice the mean genome coverage (136)). All non-autosomal sites were discarded.
DOI: 10.5061/dryad.11p3v/2
title: Rock ptarmigan autosomal consensus sequence

description: Rock ptarmigan autosomal consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (33) and maximum read depth (-D) set to twice the mean genome coverage (202)). All non-autosomal sites were discarded.
DOI: 10.5061/dryad.11p3v/3
title: Black grouse autosome consensus sequence

description: Black grouse autosome consensus sequence used as input for PSMC. The file was generated from a filtered bam file using the samtools mpileup, bcftools and vcfutils.pl (vcf2fq) pipeline (downgrading mapping quality for reads containing excessive mismatches (-C) to 50, minimum read depth (-d) set to 1/3 of the mean genome coverage (28) and maximum read depth (-D) set to twice the mean genome coverage (171)). All non-autosomal sites were discarded.
DOI: 10.5061/dryad.11p3v/4
title: LastZ output files

description: LastZ output files for the alignment of each autosome of each grouse species and its respective chicken chromosome. Gg - chicken, Ll - willow grouse, Lm - rock ptarmigan and Tt - black grouse. Each LastZ (v1.03.54) run was applied with the following parameters: --ydrop=9400, --hspthresh=4500, --gappedthresh=3000 and –notransition. The 'nmatch' and 'nmismatch' columns (7 and 8 respectively in the output files) were used to calculate the mutation rate according to the formula: (sum of mismatches / [sum of matches + mismatches]) / 2x41.88; where 41.88 is the divergence time (million years) between chicken and the three grouse species.
DOI: 10.5061/dryad.11p3v/5
title: Willow grouse autosomal heterozygous sites

description: A vcf file containing the autosomal heterozygous sites of the willow grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 22 and 136 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function.
DOI: 10.5061/dryad.11p3v/6
title: Rock ptarmigan autosomal heterozygous sites

description: A vcf file containing the autosomal heterozygous sites of the rock ptarmigan individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 33 and 202 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function.
DOI: 10.5061/dryad.11p3v/7
title: Black grouse autosomal heterozygous sites

description: A vcf file containing the autosomal heterozygous sites of the black grouse individual. It was generated by the default samtools mpileup and bcftools pipeline. Filtering was performed by vcffilter (from the vcflib suite: https://github.com/ekg/vcflib) to keep only heterozygous sites with read depth between 28 and 171 and mapping quality above 20. Indels were removed by vcftools (v0.1.13), using the '--remove-indels' function.
DOI: 10.5061/dryad.2d4m9/10
title: Model 2 datasets (hierarchical island model), sampling strategy No. 2.2

description: This zipped file contains 50 datasets simulated under a hierarchical  island model, with 10 subpopulations sampled (20 individuals sampled in eight subpopulations and 10 in the remaining two), and a total of 180 individuals (cf. 'Sub-Sampling' section in M&M). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/11
title: Model 2 datasets (hierarchical island model), sampling strategy No. 3

description: This zipped file contains 50 datasets simulated under a hierarchical  island model, with 6 subpopulations evenly sampled (4 subpopulations not sampled) and a total of 150 individuals (sampling strategy no. 3; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/12
title: Model 2 datasets (hierarchical island model), sampling strategy No. 4

description: This zipped file contains 50 datasets simulated under a hierarchical  island model, with 6 subpopulations unevenly sampled (4 subpopulations not sampled) and a total of 150 individuals (sampling strategy no. 4; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/13
title: Model 3 datasets (hierarchical stepping stone model), full datasets

description: This zipped file contains 50 datasets simulated under a hierarchical  stepping stone model with 10 subpopulations and 200 individuals per subpopulation. The files, in Fstat format, were created by the EASYPOP program.
DOI: 10.5061/dryad.2d4m9/14
title: Model 3 datasets (hierarchical stepping stone model), sampling strategy No. 1

description: This zipped file contains 50 datasets simulated under a hierarchical  stepping stone model, with 10 subpopulations evenly sampled and a total of 620 individuals (sampling strategy no. 1; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/15
title: Model 3 datasets (hierarchical stepping stone model), sampling strategy No. 2.1

description: This zipped file contains 50 datasets simulated under a hierarchical  stepping stone model, with 10 subpopulations unevenly sampled and a total of 620 individuals (sampling strategy no. 2; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/16
title: Model 3 datasets (hierarchical stepping stone model), sampling strategy No. 2.2

description: This zipped file contains 50 datasets simulated under a hierarchical  stepping stone model, with 10 subpopulations sampled (20 individuals sampled in eight subpopulations and 10 in the remaining two), and a total of 180 individuals (cf. 'Sub-Sampling' section in M&M). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/8
title: Model 2 datasets (hierarchical island model), sampling strategy No. 1

description: This zipped file contains 50 datasets simulated under a hierarchical  island model, with 10 subpopulations evenly sampled and a total of 620 individuals (sampling strategy no. 1; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.2d4m9/9
title: Model 2 datasets (hierarchical island model), sampling strategy No. 2.1

description: This zipped file contains 50 datasets simulated under a hierarchical  island model, with 10 subpopulations unevenly sampled and a total of 620 individuals (sampling strategy no. 2; cf. Table 1). The files, in Fstat format, were simulated in the EASYPOP program and sampled in R via a custom written script.
DOI: 10.5061/dryad.4vc2n/1
title: Population collection sites and USDA National Genetic Resources Program (GRIN) accession numbers for populations of 26 Helianthus species and Phoebanthus tenuifolius.

description: Population collection sites and USDA National Genetic Resources Program (GRIN) accession numbers for populations of 26 Helianthus species and Phoebanthus tenuifolius grown in a common garden.
DOI: 10.5061/dryad.4vc2n/2
title: Number of replicate seedlings used for analyses of fine root traits

description: Number of replicate Helianthus and Phoebanthus tenuifolius seedlings per population used for analysis of root morphology, chemistry, and anatomy in each year of the study and pooled over the entire study.
DOI: 10.5061/dryad.4vc2n/3
title: Least-squares means for fine root traits in populations of 26 Helianthus species and Phoebanthus tenuifolius.

description: Least-squares means for fine root traits in populations of 26 Helianthus species and Phoebanthus tenuifolius.
DOI: 10.5061/dryad.4vc2n/4
title: Native site characteristics for populations of 26 species of Helianthus and Phoebanthus tenuifolius, representing a subset of the data reported in Mason and Donovan (2015).

description: Native site characteristics for populations of 26 species of Helianthus and Phoebanthus tenuifolius, representing a subset of the data reported in Mason and Donovan (2015).
DOI: 10.5061/dryad.5145k/3
title: Command used in the analysis of STATA
DOI: 10.5061/dryad.553pg/1
title: Gomard_et_al_secY_adk_rrs2_Leptospira_alignments

description: Sequences (secY, adk and rrs2) of Leptospira from Malagasy bats.
DOI: 10.5061/dryad.5n72m/10
title: Table 10. Genotypes x Eclosion Timing for U. canaliculatus

description: Raw genotype scores for individual U. canaliculatus attacking sympatric pairs of hawthorn and apple flies across 20 loci (labeled UC08-UC061) used in two-way ANOVA's to test for associations with eclosion timing.
DOI: 10.5061/dryad.5n72m/11
title: Table 11. Genotypes x Eclosion Timing for D. mellea

description: Raw genotype scores for individual D. mellea attacking sympatric pairs of hawthorn and apple flies across 21 loci (labeled DM01-DM65) used in two-way ANOVA's to test for associations with eclosion timing.
DOI: 10.5061/dryad.5n72m/4
title: Table 4. Microsatellite Allele Frequencies for Diachasmimorpha mellea

description: Microsatellite allele frequencies for D. mellea attacking different Rhagoletis hosts (hawthorn, apple, blueberry, and black cherry flies) at at four sites designated 1, 2, 3 & 6 in the eastern U.S.
DOI: 10.5061/dryad.5n72m/5
title: Table 5. Results From Host Fruit Odor Discrimination of D. mellea and U. canaliculatus

description: Results from host fruit odor discrimination assays conducted in a Y-tube olfactometer for U. canaliculatus and D. mellea.
DOI: 10.5061/dryad.5n72m/6
title: Table 6. Results From Cross-reared D. alloeum Host Odor Discrimination

description: Results from host fruit odor discrimination assays conducted in a Y-tube olfactometer where individual hawthorn origin and blueberry origin D. alloeum were reared for a single generation through a non-natal apple host plant and the apple infesting host race of R. pomonella host flies
DOI: 10.5061/dryad.5n72m/7
title: Table 7. The Site of Mating Assembly For U. canaliculatus and D. mellea.

description: The site of mating assembly for U. canaliculatus and D. mellea.
DOI: 10.5061/dryad.5n72m/8
title: Table 8. Eclosion timing for flies and wasps

description: The number of days to eclosion following post-winter heating for different host associated populations of flies in the Rhagoletis pomonella sibling species complex and the parasitoid wasps that attack the flies (U. canaliculatus and D. mellea).
DOI: 10.5061/dryad.5n72m/9
title: Table 9. Longevity Estimates for U. canaliculatus and D. mellea

description: Estimates of longevity of adult D. mellea and U. canaliculatus.
DOI: 10.5061/dryad.700jq/1
title: Data OSN analysis
DOI: 10.5061/dryad.700jq/2
title: Data Selection analysis
DOI: 10.5061/dryad.700jq/3
title: Data Heritability analysis
DOI: 10.5061/dryad.700jq/4
title: Pedigree
DOI: 10.5061/dryad.79p2b/1
title: Data (EVOB-D-15-00228R1)

description: Behavioural field data on aggressive responses. All relevant variables are shown.
DOI: 10.5061/dryad.7vv37/1
title: Supplemental Data File-Riedman-revised

description: Includes a table of fossil occurrences by sample with brief lithological descriptions and a table of England finder coordinates of each figured specimen and it's accession number foe South Australian Musuem in Adelaide where specimens are reposited.
DOI: 10.5061/dryad.85j01/1
title: MakWil16
DOI: 10.5061/dryad.9c87t/1
title: Baseline survey private sector Feb 27 2016
DOI: 10.5061/dryad.c75j9/10
title: S10 Muscle strain script for Erlikosaurus andrewsi
DOI: 10.5061/dryad.c75j9/3
title: S3 Blender setup example for Allosaurus fragilis
DOI: 10.5061/dryad.c75j9/4
title: S4 Blender setup example for Tyrannosaurus rex
DOI: 10.5061/dryad.c75j9/5
title: S5 Blender setup example for Erlikosaurus andrewsi
DOI: 10.5061/dryad.c75j9/6
title: S6 Muscle strain script for Alligator mississipiensis

description: Python script for strain analysis for Alligator mississippiensis (.txt)
DOI: 10.5061/dryad.c75j9/7
title: S7 Muscle strain script for Buteo buteo

description: Python script for strain analysis for Buteo buteo (.txt)
DOI: 10.5061/dryad.c75j9/8
title: S8 Muscle strain script for Allosaurus fragiliis

description: Python script for strain analysis for Allosaurus fragilis (.txt)
DOI: 10.5061/dryad.c75j9/9
title: S9 Muscle strain script for Tyrannosaurus rex

description: Python script for strain analysis for Tyrannosaurus rex (including comments) (.txt)
DOI: 10.5061/dryad.cr0mb/1
title: Trinity_Assemblies_Unmodified.tar

description: Unmodified Trinity assemblies for H. erythrogramma, H. tuberculata, and L. variegatus
DOI: 10.5061/dryad.cr0mb/2
title: Trinity_Assemblies_Modified.tar

description: Modified Trinity assemblies for H. erythrogramma, H. tuberculata, and L. variegatus
DOI: 10.5061/dryad.cr0mb/3
title: Fastq Files for L. variegatus, 4-cell stage

description: These are fastq files for L. variegatus, 4-cell stage. There are three replicates, each is 50 bp PE
DOI: 10.5061/dryad.ff2p0/1
title: Body length data (log transformed) in Cephalotes

description: Maximum reported body length measurements from the worker caste of Cephalotes species. Data are log transformed. Data are from multiple museum collections, most of which are in de Andrade and Baroni-Urbani (1999). Data for C. specularis are from Brandão et al. (2014), measurements for C_sp3 came from data from a reproductively mature colony (S. Powell, in press), and data for C_sp2 came from one individual (S. Powell, unpublished data).
DOI: 10.5061/dryad.ff2p0/2
title: Molecular and morphological data matrix with MrBayes block

description: Nexus file that includes the sequence alignment of 5 genes (from Price et al. 2014) and a morphological dataset (from de Andrade and Baroni-Urbani 1999). About 50% of species have molecular data, and morphological data are included for all known Cephalotes species, including extinct species. A MrBayes blocks is included for the analyses for Figure S1 (extinct and extant species phylogram) and Figure S2 (extant species phylogram).