cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh059838.07fu
title: SH059838.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh059839.07fu
title: SH059839.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh059840.07fu
title: SH059840.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh059841.07fu
title: SH059841.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh059842.07fu
title: SH059842.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.6084/m9.figshare.13115073
title: Additional file 11 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 11. KEGG pathway analysis of mRNAs.
DOI: 10.6084/m9.figshare.13115088.v1
title: Additional file 15 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 15. CircRNA/mRNA-miRNA co-expression relationships.
DOI: 10.6084/m9.figshare.13115112.v1
title: Additional file 7 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 7. All the differentially expressed lncRNAs in this study.
DOI: 10.6084/m9.figshare.13115115.v1
title: Additional file 8 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 8. All the differentially expressed circRNAs in this study.
DOI: 10.5281/zenodo.10616667
title: Lariat Peptide GaMD input files
DOI: 10.5281/zenodo.10616666
title: Lariat Peptide GaMD input files
DOI: 10.6084/m9.figshare.24125508
title: Plant Prenylflavonoids and Prenyltransferases Related to their Biosynthesis

description: As the most widely distributed phenolic compounds in the plant kingdom, flavonoids play an integral role in plant reproduction and defense. Also, they represent many important quality traits of edible plants like color and antioxidants, and have a variety of biological activities beneficial to human health. To diversify the functions of synthesized flavonoids, plants have evolved various enzymes to perform structural modifications on different flavonoid backbones. One of these modifications is prenylation, which refers to the attachment of an isoprenoid moiety, most commonly a prenyl (C5) group. Numerous structure-activity analyses of prenylflavonoids have shown that isopentenyl substitutions at specific sites can significantly expand and enhance their chemical properties, bioactivities and potential health benefits. This review summarizes prenylflavonoids reported so far in all plant species and highlights the current knowledge on naturally occurring prenyltransferases from different biological sources that can act on plant flavonoids to synthesize prenylflavonoids. Most of them have strict flavonoid substrate- and regio-specificities, and they provide a valuable gene repository to facilitate the efficient scale-up production of flavonoids with specific prenylation patterns in cell factories. To truly achieve this goal, it is necessary to explore more diversified natural prenyltransferases, and to optimize the bioreactors system such as pathway regulation and modular co-culture engineering in the future.
DOI: 10.6084/m9.figshare.24125508.v1
title: Plant Prenylflavonoids and Prenyltransferases Related to their Biosynthesis

description: As the most widely distributed phenolic compounds in the plant kingdom, flavonoids play an integral role in plant reproduction and defense. Also, they represent many important quality traits of edible plants like color and antioxidants, and have a variety of biological activities beneficial to human health. To diversify the functions of synthesized flavonoids, plants have evolved various enzymes to perform structural modifications on different flavonoid backbones. One of these modifications is prenylation, which refers to the attachment of an isoprenoid moiety, most commonly a prenyl (C5) group. Numerous structure-activity analyses of prenylflavonoids have shown that isopentenyl substitutions at specific sites can significantly expand and enhance their chemical properties, bioactivities and potential health benefits. This review summarizes prenylflavonoids reported so far in all plant species and highlights the current knowledge on naturally occurring prenyltransferases from different biological sources that can act on plant flavonoids to synthesize prenylflavonoids. Most of them have strict flavonoid substrate- and regio-specificities, and they provide a valuable gene repository to facilitate the efficient scale-up production of flavonoids with specific prenylation patterns in cell factories. To truly achieve this goal, it is necessary to explore more diversified natural prenyltransferases, and to optimize the bioreactors system such as pathway regulation and modular co-culture engineering in the future.
DOI: 10.6084/m9.figshare.11542725
title: Synthesis, fluorescence, and anticancer activity of silver(I) complex based on 2-hydroxyquinoxaline ligand

description: The reaction of 2-hydroxyquinoxaline ligand with silver nitrate in anhydrous methanol leaded to the formation of complex [Ag·(L)·(NO<sub>3</sub>)] (<b>1</b>) (L = 2-hydroxyquinoxaline). This complex is characterized by FT-IR spectrometer, elemental analysis, X-ray photoelectron spectroscopy (XPS), and X-ray single-crystal diffraction. The results show that <b>1</b> belongs to the monoclinic, <i>P</i>2<sub>1</sub>/<i>c</i> space group, with <i>a</i> = 13.9949(12) Å, <i>b</i> = 9.2241(7) Å, <i>c</i> = 7.3110(10) Å, <i>α</i> = 90°; <i>β</i> = 101.945(11)°; <i>γ</i> = 90°, <i>V</i> = 923.34(17) Å<sup>3</sup>, Mr = 316.03. The solid-state fluorescence tests show that the fluorescence intensity of <b>1</b> is stronger than L, and it is accompanied by a blue shift phenomenon. The activity studies have shown that <b>1</b> has good anti-cancer activity with human cancer cells <i>BEL-7404</i>, <i>A549</i>, <i>HepG2</i>, and <i>NCI-H1650</i>, and their IC<sub>50</sub> are less than 15 µg/mL. It can be seen that the silver-based complex not only has a good fluorescence response, but also has good anticancer activity.
DOI: 10.6084/m9.figshare.11542725.v1
title: Synthesis, fluorescence, and anticancer activity of silver(I) complex based on 2-hydroxyquinoxaline ligand

description: The reaction of 2-hydroxyquinoxaline ligand with silver nitrate in anhydrous methanol leaded to the formation of complex [Ag·(L)·(NO<sub>3</sub>)] (<b>1</b>) (L = 2-hydroxyquinoxaline). This complex is characterized by FT-IR spectrometer, elemental analysis, X-ray photoelectron spectroscopy (XPS), and X-ray single-crystal diffraction. The results show that <b>1</b> belongs to the monoclinic, <i>P</i>2<sub>1</sub>/<i>c</i> space group, with <i>a</i> = 13.9949(12) Å, <i>b</i> = 9.2241(7) Å, <i>c</i> = 7.3110(10) Å, <i>α</i> = 90°; <i>β</i> = 101.945(11)°; <i>γ</i> = 90°, <i>V</i> = 923.34(17) Å<sup>3</sup>, Mr = 316.03. The solid-state fluorescence tests show that the fluorescence intensity of <b>1</b> is stronger than L, and it is accompanied by a blue shift phenomenon. The activity studies have shown that <b>1</b> has good anti-cancer activity with human cancer cells <i>BEL-7404</i>, <i>A549</i>, <i>HepG2</i>, and <i>NCI-H1650</i>, and their IC<sub>50</sub> are less than 15 µg/mL. It can be seen that the silver-based complex not only has a good fluorescence response, but also has good anticancer activity.
DOI: 10.25919/mdre-p295
title: Parkes observations for project P1183 semester 2023OCTS_10

description: We have detected a total of 48 bursts of FRB 20220529 using the Parkes UWL receiver, with 29 of them detected during full polarization observations. Our previous cooperating observations of FAST and Parkes for FRB 20220529 have revealed significant variations in flux distribution during different active periods. However, only 3 bursts from Parkes have been observed simultaneously with FAST, one of which has the potential to improve the spectrum limits of repeating FRBs by more than an order of magnitude. To further investigate FRB 20220529, we have scheduled regular FAST observations every fortnight, tracking the source for 20 minutes each time. Additionally, we have been granted another 10 hours of FAST time to facilitate simultaneous observations of FRB 20200529 using both the FAST and Parkes telescopes. Therefore, we propose to continue monitoring the source of FRB 20220529 using the Parkes UWL receiver, ensuring high-time resolution and employing full-polarization observations to: (1) detect more bursts using the Parkes UWL receiver, with corresponding simultaneous observations from FAST, in order to obtain robust constraints on the radiation spectrum of repeating FRBs; (2) explore additional clues regarding the active periods of FRB 20220529; (3) study the microstructure of the bursts.
DOI: 10.6084/m9.figshare.9970037
title: Contralateral C7 transfer <i>via</i> both ulnar nerve and medial antebrachial cutaneous nerve to repair total brachial plexus avulsion: a preliminary report

description: <b>Aim:</b> After brachial plexus injuries, sacrifice of the contralateral C7 (cC7) root from the non-injured side is well tolerated and various schemes to innervate the injured side from the cC7 root have been used. <b>Objective:</b> To demonstrate the surgical outcomes from transferring the cC7 to the affected side <i>via</i> both the ulnar nerve and medial antebrachial cutaneous nerve (MACN). <b>Methods:</b> A retrospective study of 16 adult patients sustaining total brachial plexus avulsion who underwent this procedure. The British Medical Research Council (MRC) grading system and the disabilities of the arm, shoulder, and hand (DASH) questionnaire scoring were used to evaluate the recovery. <b>Results:</b> About 68.75% of the patients achieved functional recovery of elbow flexion to M3 or better and 43.75% achieved motor recovery of wrist and finger flexion to M3 or better. Sensation in the median nerve territory recovered to S2 or better in 68.75%. The DASH scores after surgery were significantly lower than those before surgery. <b>Conclusions:</b> cC7 transfer <i>via</i> both ulnar and MACNs is an effective and safe procedure in patients sustaining total injuries of brachial plexus.
DOI: 10.6084/m9.figshare.9970037.v1
title: Contralateral C7 transfer <i>via</i> both ulnar nerve and medial antebrachial cutaneous nerve to repair total brachial plexus avulsion: a preliminary report

description: <b>Aim:</b> After brachial plexus injuries, sacrifice of the contralateral C7 (cC7) root from the non-injured side is well tolerated and various schemes to innervate the injured side from the cC7 root have been used. <b>Objective:</b> To demonstrate the surgical outcomes from transferring the cC7 to the affected side <i>via</i> both the ulnar nerve and medial antebrachial cutaneous nerve (MACN). <b>Methods:</b> A retrospective study of 16 adult patients sustaining total brachial plexus avulsion who underwent this procedure. The British Medical Research Council (MRC) grading system and the disabilities of the arm, shoulder, and hand (DASH) questionnaire scoring were used to evaluate the recovery. <b>Results:</b> About 68.75% of the patients achieved functional recovery of elbow flexion to M3 or better and 43.75% achieved motor recovery of wrist and finger flexion to M3 or better. Sensation in the median nerve territory recovered to S2 or better in 68.75%. The DASH scores after surgery were significantly lower than those before surgery. <b>Conclusions:</b> cC7 transfer <i>via</i> both ulnar and MACNs is an effective and safe procedure in patients sustaining total injuries of brachial plexus.
DOI: 10.6084/m9.figshare.25145277
title: Sequential Selection for Minimizing the Variance with Application to Crystallization Experiments

description: For many crystal-based products (e.g., pharmaceuticals, energy storage), the size uniformity is not only a key quality attribute, but sometimes also an indicator of other attributes such as solid purity. This paper proposes a sequential selection approach to find a proper experimental setting that leads to high uniformity, or equivalently, small variance for crystal sizes, from the advanced slug flow reaction crystallization process of a model crystal, called manganese oxalate hydrate. The proposed sequential selection approach contains a Bayesian adaptive method to incorporate new uniformity measurements in each step and two design acquisition functions to improve the selection of the most promising experimental setting in terms of minimizing the variance. We study the performance of the proposed approach through multiple synthetic numerical studies, as well as a case study based on data from slug flow crystallization experiments. Throughout these studies, the proposed approach shows competitive performance in identifying the best experimental setting.
DOI: 10.5281/zenodo.10618617
title: EPC Data

description: Data of our article ''
DOI: 10.5281/zenodo.10618618
title: EPC Data

description: Data of our article ''
DOI: 10.6084/m9.figshare.13115073.v1
title: Additional file 11 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 11. KEGG pathway analysis of mRNAs.
DOI: 10.6084/m9.figshare.6823943.v1
title: Additional file 4: of Profiling of testis-specific long noncoding RNAs in mice

description: Table S4. The numbers and ratios of six types of testicular lncRNA. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.13115082.v1
title: Additional file 13 of Genome-wide analysis of differentially expressed mRNAs, lncRNAs, and circRNAs in chicken bursae of Fabricius during infection with very virulent infectious bursal disease virus

description: Additional file 13. LncRNA-mRNA co-expression relationships.
DOI: 10.6084/m9.figshare.6823958
title: Additional file 5: of Profiling of testis-specific long noncoding RNAs in mice

description: Table S5. Nearby protein-coding genes located within genomic regions 10Â kb up- and downstream of the testis-specific lincRNAs. (XLSX 24 kb)
DOI: 10.6084/m9.figshare.7873241
title: Paleoproterozoic transition in tectonic regime recorded by the Eastern Block of the North China Craton: evidence from detrital zircons of the Langzishan Formation, Jiao-Liao-Ji Belt

description: The Eastern Block of the North China Craton records Paleoproterozoic oceanic plate subduction, the opening and subsequent closure of a back-arc basin, and a following collisional orogenic event to generate the Jiao-Liao-Ji Belt (JLJB). However, the processes involved in the initiation of subduction remain unclear. This study presents U–Pb age and trace elemental data for detrital zircons from the Langzishan Formation, the lowermost sedimentary unit within the JLJB, to constrain the provenance, depositional age, and depositional environment of this formation as well as the processes involved in the Paleoproterozoic transition in tectonic regime recorded by the Eastern Block. The U–Pb ages of these detrital zircons yield one major age peak at ca. 2529, and three minor age peaks at ca. 2700, ca. 2347, and ca. 2198 Ma. Provenance analysis indicates that the Langzishan Formation was derived from basement rocks in the Longgang Block with minor contributions from early magmatic rocks within the JLJB. Detrital zircon age contribution further suggests that the deposition of the Langzishan Formation was in a passive continental margin and commenced no earlier than 2205 Ma. Combining with previous research on the widespread distribution of magmatic and sedimentary rocks that formed in convergent settings in this area, this study suggests that the Eastern Block records a transition in tectonic regime at ~2205–2170 Ma, from passive continental margin to active continental margin settings, most likely as a result of the re-initiation of global plate tectonic cycling during the early history of the Earth.
DOI: 10.6084/m9.figshare.6824075
title: Additional file 14: of Germline and somatic variations influence the somatic mutational signatures of esophageal squamous cell carcinomas in a Chinese population

description: Table S6. Summary of the clinical features of the 302 ESCC patients included in this study. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.7873241.v1
title: Paleoproterozoic transition in tectonic regime recorded by the Eastern Block of the North China Craton: evidence from detrital zircons of the Langzishan Formation, Jiao-Liao-Ji Belt

description: The Eastern Block of the North China Craton records Paleoproterozoic oceanic plate subduction, the opening and subsequent closure of a back-arc basin, and a following collisional orogenic event to generate the Jiao-Liao-Ji Belt (JLJB). However, the processes involved in the initiation of subduction remain unclear. This study presents U–Pb age and trace elemental data for detrital zircons from the Langzishan Formation, the lowermost sedimentary unit within the JLJB, to constrain the provenance, depositional age, and depositional environment of this formation as well as the processes involved in the Paleoproterozoic transition in tectonic regime recorded by the Eastern Block. The U–Pb ages of these detrital zircons yield one major age peak at ca. 2529, and three minor age peaks at ca. 2700, ca. 2347, and ca. 2198 Ma. Provenance analysis indicates that the Langzishan Formation was derived from basement rocks in the Longgang Block with minor contributions from early magmatic rocks within the JLJB. Detrital zircon age contribution further suggests that the deposition of the Langzishan Formation was in a passive continental margin and commenced no earlier than 2205 Ma. Combining with previous research on the widespread distribution of magmatic and sedimentary rocks that formed in convergent settings in this area, this study suggests that the Eastern Block records a transition in tectonic regime at ~2205–2170 Ma, from passive continental margin to active continental margin settings, most likely as a result of the re-initiation of global plate tectonic cycling during the early history of the Earth.
DOI: 10.6084/m9.figshare.20455451.v1
title: Additional file 3 of M6A-related lncRNAs predict clinical outcome and regulate the tumor immune microenvironment in hepatocellular carcinoma

description: Additional file 3: Supplementary Table 2. The results of correlation analysis of m6A regulators and lncRNAs.