cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/a405acd6864146e82c278adeb17a3602
title: Precipitation data for four sites on the eastern side of Delmarva Peninsula, 2001-2021

description: Rain gauges (Davis Instruments rain collector with HOBO Event Recorder) were installed at four sites latitudinally along the Eastern Shore, VA to measure instantaneous rainfall. The logger only records when there is a precipitation event (0.2 mm minimum). We calculated daily rain totals and provided only dates with rain. The data represents the time period of 8/9/01 on for Mill, Garg, and Mosq sites and 10/16/01 on for Wach site. The system was down between October 2008 and December 2010. It was replaced by an upgraded system in January 2011 with new Davis tipping-bucket rain gauges and data loggers, and primary responsibility for data collection and processing shifted to VCR/LTER staff. This file will be updated when additional data is downloaded from the rain gauges
DOI: 10.6073/pasta/b65dd4bc9f2a1bb67ee48b9067393ce3
title: High and Low Tides of Hog Island Bay, Redbank, VA, and Oyster, VA for the Virginia Coast Reserve 2007-2021

description: This dataset is a summary version of the 12-minute tide data. It records the date, time and level of tides at high and low tide (as indicated by the data). Water temperatures are also recorded.
DOI: 10.6073/pasta/8dfaf5185bc18b4f791a1040d4a64633
title: Historical GIS Data for Harvard Forest Properties from 1908 to Present

description: Since 1908, the Harvard Forest has conducted forest surveys approximately every 10-20 years on its three largest tracts (total 1033 ha). These maps have been digitized along with maps of environmental factors (topography, soils), disturbance (1938 hurricane, historical land-use), and silvicultural treatments. These datalayers will allow researchers to understand the influence of environment factors, disturbances, and silviculture on the structure and composition of modern forest stands as well as assisting in locating and describing research sites. The dataset also includes an elevation grid (NED 30 meter cells), and a shapefile of linear features (trails, stonewalls, etc). Original maps were transcribed to standardized basemaps by various researchers. These basemaps were then scanned and digitized as shapefiles in ArcView GIS 3.2. The shapefiles were then transformed to Massachusetts State Plane Meters NAD83 projection in ArcGIS and rubbersheeted to align better with aerial photographs downloaded from MassGIS. Locations of control points will be permanently archived at the Harvard Forest to facilitate transformation of future datalayers.
DOI: 10.15468/7sxazt
title: Crabronidae and Sphecidae (Hymenoptera: Apoidea) type specimens deposited in the Museu de Zoologia da Universidade de São Paulo, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Jesus, Juliana Menezes de, Onody, Helena Carolina, Ramos, Kelli dos Santos, Andrade, Tamires de Oliveira, Santos, Alvaro Doria dos, Brandão, Carlos Roberto Ferreira (2019): Crabronidae and Sphecidae (Hymenoptera: Apoidea) type specimens deposited in the Museu de Zoologia da Universidade de São Paulo, Brazil. Papéis Avulsos de Zoologia 59: 1-23, DOI: 10.11606/1807-0205/2019.59.17
DOI: 10.6073/pasta/e68f9a31c231a6ccfd318b1dcdeb6031
title: Plant aboveground biomass data: The influence of natural enemies on plant community composition and productivity

description: The purpose of this experiment is to determine the influences of natural enemies, including plant pathogenic fungi and insect pests, influence plant community composition, productivity, and diversity over time. The experiment is being conducted in an old field that is burned every other year. Within the old field, there are 8 blocks, and within each block there are 6 treatments: foliar fungicide, soil drench fungicide, foliar insecticide, mammal exclosure, the combination of all enemy suppression tactics (pesticides and mammal exclosure), and a nontreated control. The pesticides are applied repeatedly throughout the growing season. Within the plots, community productivity, species composition, percent cover, and pest damage are being quantified over time.
DOI: 10.6084/m9.figshare.14798565
title: swallowing acoustics.csv

description: We collected swallowing sounds from 30 healthy subjects ranging in age from 19-60 years old and self-reporting no history of swallowing disorders. Each participant swallowed liquids and foods regarding different consistency or texture with their head-trunk in neutral position.
DOI: 10.6073/pasta/61a6d28f6a13486d0cd9977e07d84a7e
title: Prey Capture by Carnivorous Plants Worldwide 1923-2007

description: Available phylogenetic data illustrate that in all carnivorous lineages, the ancestral trap type is a sticky, flypaper-type trap (Ellison and Gotelli, 2001). In the Caryophyllales, pitfall traps (Nepenthes) and snap traps (Dionaea and Aldrovanda) are derived relative to the sticky pads of Drosera. Similarly, in the Lamiales, the sticky-leaved Pinguicula is ancestral to Genlisea with its eel (or lobster-pot) traps and Utricularia with its vacuum traps. In the Ericales, the Sarraceniaceae with its pitfall traps are derived relative to Roridula, another species with flypaper traps. Muller et al. (2004) hypothesed that carnivorous genera with rapidly evolving genomes (Genlisea and Utricularia) have more predictable and frequent captures of prey than do genera with more slowly evolving genomes; by extension it could be hypothesized that in general, carnivorous plants with more complex traps should have more predictable and frequent captures of prey than do those with relatively simple traps. Increases in predictability and frequency of prey capture could be achieved by evolving more elaborate mechanisms for attracting prey, by specializing on particular types of prey, or, as Darwin suggested, by specializing on particular (large) sizes of prey. In all cases, one would expect that prey actually captured would not be a random sample of the available prey. Furthermore, when multiple species of carnivorous plants co-occur, one would predict, again following Darwin that interspecific competition would lead to specialization on particular kinds of prey. Because the traps of carnivorous plants accumulate identifiable remains of prey, analysis of trap contents can provide an aggregate record of the prey that have been successfully "sampled" by the plant. Such samples could be used to begin to test the hypothesis that carnivorous plant genera differ in prey composition and to look for evidence of specialization in prey capture. Over the past 80 years, numerous ecologists have gathered data on prey contents of carnivorous plants of a number of species and genera from around the world, but these data have never been summarized or synthesized; this summary and synthesis is accomplished in Ellison et al. (2008). The accompanying data are in this file.
DOI: 10.6073/pasta/6a80f45ec89aad3406e6f9d796b9ecfe
title: Blue Crab Densities in a Landscape Context on the Virginia Coast, Summer 2019

description: Table 1 Crab Data : Blue crab (Callinectes sapidus) abundance was sampled at twenty-four sites in Spider Crab Bay, Cobb Bay, and South Bay (comprising two large seagrass meadows: "South Bay" for the northern portion and "Ship Shoal" for the southern portion) as part of a study to evaluate the drivers of blue crab spatial patterns across restored seagrass meadows in the coastal bays of Virginia, USA. The four meadows are representative of seagrass meadows in the region that have recovered after experiencing large declines due to wasting disease and storms (Orth et al., 2006). Each meadow contained six fixed sampling sites. Each captured crab's morphological and demographic characteristics were evaluated; as such, data are presented at the individual level. Table 2 Landscape Data: Landscape measurements were taken for twenty-four sites in Spider Crab Bay, Cobb Bay, and South Bay (comprising two large seagrass meadows: "South Bay" for the northern portion and "Ship Shoal" for the southern portion) as part of a study to evaluate the drivers of blue crab spatial patterns across restored seagrass meadows in the coastal bays of Virginia, USA. The four meadows are representative of seagrass meadows in the region that have recovered after experiencing large declines due to wasting disease and storms (Orth et al. 2006). Each meadow contained six fixed sampling sites. All landscape measurements were made using QGIS 3.14.0 (QGIS.org 2020). Seagrass landscape measurements were calculated using maps developed from aerial imagery by Orth et al. (2019). Oyster reefs polygons were mapped by Ross and Luckenbach (2009). Salt marsh polygons were mapped by Berman et al. (2011) and modified based on imagery from Planet Team (2019).
DOI: 10.5281/zenodo.4973511
title: Association of oligopaint FISH labeled super-enhancers and genes with polymerase clusters (raw data, SE7-SE12)

description: This data set assesses the placement of different genomic regions relative to clusters formed by RNA polymerase II in zebrafish embryos. RNA polymerase was labeled by immunofluorescence, genomic regions by oligopaint DNA fluorescence in-situ hybridization (FISH). Microscopy images were acquired by instant-SIM microscopy, and analyzed using MatLab scripts and the bioformats importer. This data set contains the raw image data as well as all further analysis scripts. Raw image data for super enhancers SE7 to SE12
description: This data set only contains raw data, no analysis scripts.
DOI: 10.5281/zenodo.4973510
title: Association of oligopaint FISH labeled super-enhancers and genes with polymerase clusters (raw data, SE7-SE12)

description: This data set assesses the placement of different genomic regions relative to clusters formed by RNA polymerase II in zebrafish embryos. RNA polymerase was labeled by immunofluorescence, genomic regions by oligopaint DNA fluorescence in-situ hybridization (FISH). Microscopy images were acquired by instant-SIM microscopy, and analyzed using MatLab scripts and the bioformats importer. This data set contains the raw image data as well as all further analysis scripts. Raw image data for super enhancers SE7 to SE12
description: This data set only contains raw data, no analysis scripts.
DOI: 10.15468/anssnt
title: Identification key for the Brazilian species and subspecies of the family Ilyocryptidae (Crustacea, Branchiopoda, Anomopoda)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sousa, Francisco Diogo Rocha, Elmoor-Loureiro, Lourdes Maria Abdu (2019): Identification key for the Brazilian species and subspecies of the family Ilyocryptidae (Crustacea, Branchiopoda, Anomopoda). Papéis Avulsos de Zoologia 59: 1-8, DOI: 10.11606/1807-0205/2019.59.23
DOI: 10.6073/pasta/77432b837c1406a8d64dbcfd607e5023
title: Tide Data for Hog Island (1991-), Redbank (1992-), Oyster (2007-)

description: Tide data from VCR/LTER tide stations. It is available as a single large comma-separated-value file (size &gt;50MB) or as individual years. Zip files contain annually-segmented data in two forms. The file tideYY.dat contains the data for year YY in a column format. The file tideYY.csv contains the same data in a comma-delimited format. For several sites and time periods, water temperatures are also recorded. All dates and times are in Eastern Standard Time.
DOI: 10.6084/m9.figshare.14798673
title: Dataset bøjning-, træk- og tryk test

description: Dataset vedrørende bøjning-, træk- og tryk test
DOI: 10.6084/m9.figshare.14798673.v1
title: Dataset bøjning-, træk- og tryk test

description: Dataset vedrørende bøjning-, træk- og tryk test
DOI: 10.15468/xmb4xg
title: Two new species and a new distributional record of Alterosa (Trichoptera: Philopotamidae) from southeastern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Novais, Christina, Dumas, Leandro Lourenço, Nessimian, Jorge Luiz (2019): Two new species and a new distributional record of Alterosa (Trichoptera: Philopotamidae) from southeastern Brazil. Papéis Avulsos de Zoologia 59: 1-7, DOI: 10.11606/1807-0205/2019.59.52
DOI: 10.6084/m9.figshare.14785434
title: Spike Times Of Kcnq3-/- and Kcnq3+/+ CA1 Pyramidal Cells In Vivo

description: Spike times of 413 Kcnq3-/- and 309 Kcnq3+/+ putative CA1 pyramidal cells, at 20 KHz, recorded in freely behaving mice (see Gao et al., 2021 for further information).
DOI: 10.6084/m9.figshare.14785434.v1
title: Spike Times Of Kcnq3-/- and Kcnq3+/+ CA1 Pyramidal Cells In Vivo

description: Spike times of 413 Kcnq3-/- and 309 Kcnq3+/+ putative CA1 pyramidal cells, at 20 KHz, recorded in freely behaving mice (see Gao et al., 2021 for further information).
DOI: 10.5066/p9qf62cq
title: Daily 30-m fractional snow covered area and summary stats for the National Elk Refuge, Wyoming from 2015 to 2020

description: This dataset contains daily fractional snow covered area (fSCA) at 30-m spatial resolution from August 1, 2015 - May 15, 2020 (five winters) for the National Elk Refuge in Wyoming, USA. The following summary statistics are also included: date of snow accumulation, date of snow melt, number of days in year with snow on ground, and percentage of &quot;winter days&quot; in year with snow on ground. The SNOWARP algorithm was used to produce these data (Berman et. al., 2018; see full citation below), in which dynamic time warping fuses together MODIS MOD10A1 with Landsat level-3 fSCA, resulting in daily 30-m fSCA estimates. All dates correspond to winter day of year (WDOY), which runs between August 1 - July 31 each season and has values between 1-365. Date of snow accumulation and date of snow melt provide an indication of when snow begins to persist and when it melts. Details are provided below. Number of days in year with snow on ground is the number of days, out of 365, with snow on ground between August 1 and July 31st each winter. The percentage of winter days in year with snow on ground is the percentage of days with snow each winter between date of snow accumulation and date of snow melt. Please note that winter 2018-2019 was only processed until May 31, 2019 (WDOY 304), and winter 2019-2020 was only processed until May 15, 2020 (WDOY 288), and therefore the only summary stat available for these winters is date of snow accumulation.
DOI: 10.5281/zenodo.4974266
title: Sediment routing and anthropogenic impact in the Huanghe River catchment, China: an investigation using Nd isotopes of river sediments

description: Table A1. Sampling locations, Sr-Nd isotopes, geochemical compositions and grain size parameters of Huanghe and loess sediments investigated. Table A2. Annual sediment load (Mt/yr) at major gauging stations along the Huanghe mainstream. Table A3. Nd isotopic compositions of major tectonic terranes and sources in the Huanghe basin (literature data). Table A4. Nd isotopes and geochemical compositions of rocks in the North China Craton. Table A5. Nd model ages of rocks from North China Craton (NCC), only rocks with Th/Sc, Th/Cr, Th/Co and Sm/Nd ratios within the range of references for NCC-UC have been selected. Table A6. Nd isotopes mixing of sediments from the lower Huanghe.
DOI: 10.5281/zenodo.4974265
title: Sediment routing and anthropogenic impact in the Huanghe River catchment, China: an investigation using Nd isotopes of river sediments

description: Table A1. Sampling locations, Sr-Nd isotopes, geochemical compositions and grain size parameters of Huanghe and loess sediments investigated. Table A2. Annual sediment load (Mt/yr) at major gauging stations along the Huanghe mainstream. Table A3. Nd isotopic compositions of major tectonic terranes and sources in the Huanghe basin (literature data). Table A4. Nd isotopes and geochemical compositions of rocks in the North China Craton. Table A5. Nd model ages of rocks from North China Craton (NCC), only rocks with Th/Sc, Th/Cr, Th/Co and Sm/Nd ratios within the range of references for NCC-UC have been selected. Table A6. Nd isotopes mixing of sediments from the lower Huanghe.
DOI: 10.25375/uct.14798025
title: DOT4D Open Textbook Landscape Survey: UCT (1/2)

description: The data in this survey is the first of its kind to reveal the institutional open textbook publishing terrain at the University of Cape Town (UCT). It gives insight into the current open textbook publication activity taking place within the university. This 2019 component is the first iteration of data from this survey. This process was repeated in 2021. <br>The aim of this survey was to produce an openly licensed baseline dataset on open textbook activity which can be utilised in research and advocacy activity. This survey data is an output from the Digital Open Textbooks for Development (DOT4D) project in the Centre for Innovation in Learning and Teaching at UCT.
DOI: 10.25375/uct.14798025.v1
title: DOT4D Open Textbook Landscape Survey: UCT (1/2)

description: The data in this survey is the first of its kind to reveal the institutional open textbook publishing terrain at the University of Cape Town (UCT). It gives insight into the current open textbook publication activity taking place within the university. This 2019 component is the first iteration of data from this survey. This process was repeated in 2021. <br>The aim of this survey was to produce an openly licensed baseline dataset on open textbook activity which can be utilised in research and advocacy activity. This survey data is an output from the Digital Open Textbooks for Development (DOT4D) project in the Centre for Innovation in Learning and Teaching at UCT.
DOI: 10.25375/uct.14797596
title: DOT4D Open Textbook Landscape Survey: UCT (2/2)

description: The data in this survey is the first of its kind to reveal the institutional open textbook publishing terrain at the University of Cape Town (UCT). It gives insight into the current open textbook publication activity taking place within the university. This 2021 component is the second iteration of data from this survey. This process was initially done in 2019. <br>The aim of this survey was to produce an openly licensed baseline dataset on open textbook activity which can be utilised in research and advocacy activity. This survey data is an output from the Digital Open Textbooks for Development (DOT4D) project in the Centre for Innovation in Learning and Teaching at UCT.<br>
DOI: 10.25375/uct.14797596.v1
title: DOT4D Open Textbook Landscape Survey: UCT (2/2)

description: The data in this survey is the first of its kind to reveal the institutional open textbook publishing terrain at the University of Cape Town (UCT). It gives insight into the current open textbook publication activity taking place within the university. This 2021 component is the second iteration of data from this survey. This process was initially done in 2019. <br>The aim of this survey was to produce an openly licensed baseline dataset on open textbook activity which can be utilised in research and advocacy activity. This survey data is an output from the Digital Open Textbooks for Development (DOT4D) project in the Centre for Innovation in Learning and Teaching at UCT.<br>
DOI: 10.6084/m9.figshare.14798721
title: Tables-Nuclear factor kappa B expression and survival outcomes in gastric cancer: a meta-analysis

description: <b>Table 1. </b>Basic characteristics of eligible studies.<b>Table 2. </b>Assessment for risk of bias in individual studies.
DOI: 10.6084/m9.figshare.14798721.v1
title: Tables-Nuclear factor kappa B expression and survival outcomes in gastric cancer: a meta-analysis

description: <b>Table 1. </b>Basic characteristics of eligible studies.<b>Table 2. </b>Assessment for risk of bias in individual studies.
DOI: 10.6073/pasta/142685b381c7f4e60175980ec8e68637
title: Plant species percent cover data: Natural Enemies, Plant Diversity and Plant Community Composition

description: The purpose of this experiment is to determine the influences of natural enemies, including plant pathogenic fungi and insect pests, influence plant community composition, productivity, and diversity over time. The experiment is being conducted in a subset of plots within the Big Biodiversity field, including monoculture, 2-species, 4-species, 8-species, 16-species, and 32-species plots. There are 5 different treatments: foliar fungicide, soil drench fungicide, foliar insecticide, the combination of all pesticides, and nontreated control. The pesticides are applied repeatedly throughout the growing season. Within the plots, community productivity, species composition, percent cover, and pest damage are being quantified over time.
DOI: 10.6084/m9.figshare.14681340
title: Multi_structure_cortical_states_deduced_from_intracellular_representations_of_fixed_tactile_input_patterns

description: Raw data and metadata for the article Multi-structure cortical states deduced from intracellular representations of fixed tactile input patterns
DOI: 10.5281/zenodo.4974342
title: Data from: Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps

description: Supplementary datasets for <strong>Kolar et al. (in press) Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps. <em>Journal of Applied Ecology.</em></strong> All related information can be found in the cited paper. When using the dataset for anything, cite the Kolar et al. <em>Journal of Applied Ecology </em>paper. For additional information, refer the paper or write to robert.tropek@gmail.com and kolarvojta@seznam.cz
description: {"references": ["Kolar et al. (in press)\u00a0Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps.\u00a0Journal of Applied Ecology."]}
DOI: 10.5281/zenodo.4974341
title: Data from: Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps

description: Supplementary datasets for <strong>Kolar et al. (in press) Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps. <em>Journal of Applied Ecology.</em></strong> All related information can be found in the cited paper. When using the dataset for anything, cite the Kolar et al. <em>Journal of Applied Ecology </em>paper. For additional information, refer the paper or write to robert.tropek@gmail.com and kolarvojta@seznam.cz
description: {"references": ["Kolar et al. (in press)\u00a0Evidence-based restoration of freshwater biodiversity after mining: Experience from Central European spoil heaps.\u00a0Journal of Applied Ecology."]}
DOI: 10.5281/zenodo.4974361
title: Microscopy of RNA Polymerase II clusters in live zebrafish embryos

description: This data set contains raw image data and derived images illustrating clusters of RNA polymerase II as observed in zebrafish embryos. The clusters are labelled by fluorescently marked antibody fragments (Fab) that detect phosphorylation of the C-terminal roman of RNA polymerase II. Antibody fragments were provided by the laboratory of Hiroshi Kimura.
DOI: 10.5281/zenodo.4974360
title: Microscopy of RNA Polymerase II clusters in live zebrafish embryos

description: This data set contains raw image data and derived images illustrating clusters of RNA polymerase II as observed in zebrafish embryos. The clusters are labelled by fluorescently marked antibody fragments (Fab) that detect phosphorylation of the C-terminal roman of RNA polymerase II. Antibody fragments were provided by the laboratory of Hiroshi Kimura.