cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4430688
title: Stellenkorpus - Forschungsdaten(management) 2020.01.03-2020.11.22

description: Diese Datensammlung von Stellenanzeigen erfolgte im Rahmen des vom Ministerium für Wissenschaft, Forschung und Kultur (MWFK) geförderten Projekts „Forschungsdatenmanagement Brandenburg“ (FDM-BB). Sie dient der Orientierung über die aktuellen Veränderungen der Bedarfe von stellenausschreibenden Institutionen im Bereich Forschungsdatenmanagement. Ausgewertet wurden dafür das Portal OpenBiblioJobs und eine Mailingliste des Deutschen Forschungsnetzes (DFN).
DOI: 10.15482/usda.adc/1524777
title: Initial set of gene ontology (GO) terms for the D v virgifera GCF_003013835.1 RefSeq protein models
DOI: 10.5281/zenodo.6379988
title: 日琉方言の命令・禁止表現:調査票とデータ集

description: このデータセットは、日琉方言の命令・禁止表現の記述・対照のための調査票と、その調査票を用いた調査結果である。以下の方言が対象となっている。( )内は報告者。<br> <br> 宮城県大崎市古川方言(報告者:中鉢絢貴)<br> 茨城県筑西市方言(報告者:大島英之)<br> 千葉県匝瑳市八日市場方言(報告者:田中智章)<br> 富山県富山市方言(報告者:小西いずみ)<br> 山梨県早川町奈良田方言(報告者:小西いずみ)<br> 大分県日田市方言(報告者:足立研二)<br> 鹿児島県霧島市隼人町方言(報告者:髙城隆一)<br> 鹿児島県いちき串木野市(荒川・羽島)方言(報告者:髙城隆一、黒木邦彦)<br> 鹿児島県肝付町内之浦方言(報告者:髙城隆一)<br> 沖縄県八重山郡与那国方言(報告者:中澤光平)<br> <br> 調査票と上の一部の方言の調査結果については下の稿で記述・解説している。<br> 小西ほか2022「日琉方言の命令・禁止表現(調査報告)」『日本語学論集』第18号(本データセットにそのpdfデータを含む)<br> 小西いずみ(2022予定)「山梨県奈良田方言の行為要求表現体系:命令と禁止の対称性に着目して」『国語と国文学』99(5). <br>
description: このデータセットは、クリエイエィブ・コモンズ・ライセンス Attribution-「表示 - 非営利 4.0 国際」NonCommercial 4.0 International (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4.0/deed.ja https://creativecommons.org/licenses/by-nc/4.0/deed.en のもとで公表する。
DOI: 10.5281/zenodo.6379987
title: 日琉方言の命令・禁止表現:調査票とデータ集

description: このデータセットは、日琉方言の命令・禁止表現の記述・対照のための調査票と、その調査票を用いた調査結果である。以下の方言が対象となっている。( )内は報告者。<br> <br> 宮城県大崎市古川方言(報告者:中鉢絢貴)<br> 茨城県筑西市方言(報告者:大島英之)<br> 千葉県匝瑳市八日市場方言(報告者:田中智章)<br> 富山県富山市方言(報告者:小西いずみ)<br> 山梨県早川町奈良田方言(報告者:小西いずみ)<br> 大分県日田市方言(報告者:足立研二)<br> 鹿児島県霧島市隼人町方言(報告者:髙城隆一)<br> 鹿児島県いちき串木野市(荒川・羽島)方言(報告者:髙城隆一、黒木邦彦)<br> 鹿児島県肝付町内之浦方言(報告者:髙城隆一)<br> 沖縄県八重山郡与那国方言(報告者:中澤光平)<br> <br> 調査票と上の一部の方言の調査結果については下の稿で記述・解説している。<br> 小西ほか2022「日琉方言の命令・禁止表現(調査報告)」『日本語学論集』第18号(本データセットにそのpdfデータを含む)<br> 小西いずみ(2022予定)「山梨県奈良田方言の行為要求表現体系:命令と禁止の対称性に着目して」『国語と国文学』99(5). <br>
description: このデータセットは、クリエイエィブ・コモンズ・ライセンス Attribution-「表示 - 非営利 4.0 国際」NonCommercial 4.0 International (CC BY-NC 4.0) https://creativecommons.org/licenses/by-nc/4.0/deed.ja https://creativecommons.org/licenses/by-nc/4.0/deed.en のもとで公表する。
DOI: 10.6084/m9.figshare.19404359
title: obstructive sleep apnea excel.xlsx

description: obstructive sleep apnea datasheet
DOI: 10.5281/zenodo.6330060
title: A generalized machine learning framework to predict the space-time yield of methanol from thermocatalytic CO2 hydrogenation

description: Thermocatalytic CO<sub>2</sub> hydrogenation to methanol is an attractive decarbonization technology to combat climate change while producing a valuable platform chemical and energy carrier. However, predicting the performance of catalytic systems for this process remains a challenge. Herein, we present a machine learning framework to predict catalyst performance from experimental descriptors. A database of Cu-, Pd-, In<sub>2</sub>O<sub>3</sub>-, and ZnO-ZrO<sub>2</sub>-based catalysts with 1425 datapoints is compiled from literature and subjected to data mining. Accurate ensemble-tree models (<em>R</em><sup>2</sup> &gt; 0.85) are developed to predict the methanol space-time yield (<em>STY</em>) from 12 descriptors, where the significance of space velocity, pressure, and metal content is revealed. The model prediction and its insights are experimentally validated, with a root mean squared error of 0.11 g<sub>MeOH</sub> h<sup>−1</sup> g<sub>cat</sub><sup>−1 </sup>between the actual and predicted methanol<em> STY</em>. The framework is purely data-driven, interpretable, cross-deployable to other catalytic processes, and serves as an invaluable tool for guided experiments and optimization.
DOI: 10.34740/kaggle/dsv/3347473
title: Mahanagar Yatayat Dataset
DOI: 10.5281/zenodo.4432402
title: Characterization of legacy persistent organic pollutants (POPs) in northern bottlenose whales of the Western North-Atlantic

description: Dataset associated with the Canadian Technical Report of Fisheries and Aquatic Sciences entitled "Characterization of legacy persistent organic pollutants (POPs) in northern bottlenose whales of the Western North-Atlantic". Presents lipid weight corrected persistent organic pollutant concentrations (microgram per gram) in the blubber of northern bottlenose whales samples in the western North Atlantic.
DOI: 10.5281/zenodo.4432401
title: Characterization of legacy persistent organic pollutants (POPs) in northern bottlenose whales of the Western North-Atlantic

description: Dataset associated with the Canadian Technical Report of Fisheries and Aquatic Sciences entitled "Characterization of legacy persistent organic pollutants (POPs) in northern bottlenose whales of the Western North-Atlantic". Presents lipid weight corrected persistent organic pollutant concentrations (microgram per gram) in the blubber of northern bottlenose whales samples in the western North Atlantic.
DOI: 10.5517/ccdc.csd.cc2395yk
title: CCDC 1945248: Experimental Crystal Structure Determination

description: Related Article: Krishna Kumar, Priyanka Tiwari, Srikanta Moharana, Rajni Kant, Subrato Bhattacharya|2022|J.Mol.Struct.|1260|132801|doi:10.1016/j.molstruc.2022.132801
DOI: 10.5517/ccdc.csd.cc29d6qn
title: CCDC 2126901: Experimental Crystal Structure Determination

description: Related Article: Shreya Mrig, Martha A Jennings, Malavika A Bhide, Clare Bakewell, Caroline E Knapp|2022|J.Chem.Res.|46|174751982210753|doi:10.1177/17475198221075301
DOI: 10.6084/m9.figshare.19404494.v1
title: Achilles dataset 21Q2

description: Achilles dataset (version 21Q2), containing sgRNA-level fold-changes and pre-processed with CRISPRcleanR for the correction of gene-independent response to CRISPR-Cas9 targeting
DOI: 10.6084/m9.figshare.19404494
title: Achilles dataset 21Q2

description: Achilles dataset (version 21Q2), containing sgRNA-level fold-changes and pre-processed with CRISPRcleanR for the correction of gene-independent response to CRISPR-Cas9 targeting
DOI: 10.5281/zenodo.6015197
title: The site of an experimental oil spill located at a freshwater wetland along the St. Lawrence River re-visited after 21 years

description: In 1999 a wetland close to Ste. Croix de Lotibiniere (Quebec, Eastern Canada) and located along the St. Lawrence River was the site of a simulated oil spill. Test plots were set up, contaminated with crude oil and subsequently used to test natural attenuation, nutrient amendment or vegetation cropping as remediation treatments. In 2020, this study revisited the former test plots to investigate any lingering effects of the original Ste. Croix study. Test plot sediments and control sediments featured detectable quantities (75 - 165 g/kg) of mid-chain n-alkanes (C10-C36), but no other kinds of hydrocarbons. Differences in hydrocarbon, total organic carbon, nitrogen and phosphorous content were not significantly different between test plot sediments and control sediments. A microbial analysis did not detect significant differences in microbial load, microbial diversity or microbial community composition between test plot sediments and control sediments. Key genes for the aerobic and anaerobic degradation of n-alkanes as well as for the aerobic degradation of polycyclic aromatic hydrocarbons were detected in all sediment samples. Abundances of these genes did not differ significantly between formerly oil-contaminated sediments and control sediments. This study shows that after 21 years, previously oil-contaminated sediments of the Ste. Croix wetland can be considered completely remediated irrespective of the performed remediation treatment. In this file archive are included, metadata, metagenome co-assembly, functional and taxonomic annotations, contigs and genes abundance matrices and MAGs files. Raw Illumina sequence data was deposited in the NCBI SRA portal under accession PRJNA818909.
DOI: 10.5281/zenodo.6015196
title: The site of an experimental oil spill located at a freshwater wetland along the St. Lawrence River re-visited after 21 years

description: In 1999 a wetland close to Ste. Croix de Lotibiniere (Quebec, Eastern Canada) and located along the St. Lawrence River was the site of a simulated oil spill. Test plots were set up, contaminated with crude oil and subsequently used to test natural attenuation, nutrient amendment or vegetation cropping as remediation treatments. In 2020, this study revisited the former test plots to investigate any lingering effects of the original Ste. Croix study. Test plot sediments and control sediments featured detectable quantities (75 - 165 g/kg) of mid-chain n-alkanes (C10-C36), but no other kinds of hydrocarbons. Differences in hydrocarbon, total organic carbon, nitrogen and phosphorous content were not significantly different between test plot sediments and control sediments. A microbial analysis did not detect significant differences in microbial load, microbial diversity or microbial community composition between test plot sediments and control sediments. Key genes for the aerobic and anaerobic degradation of n-alkanes as well as for the aerobic degradation of polycyclic aromatic hydrocarbons were detected in all sediment samples. Abundances of these genes did not differ significantly between formerly oil-contaminated sediments and control sediments. This study shows that after 21 years, previously oil-contaminated sediments of the Ste. Croix wetland can be considered completely remediated irrespective of the performed remediation treatment. In this file archive are included, metadata, metagenome co-assembly, functional and taxonomic annotations, contigs and genes abundance matrices and MAGs files. Raw Illumina sequence data was deposited in the NCBI SRA portal under accession PRJNA818909.
DOI: 10.6084/m9.figshare.14838205
title: A prognostic study on the effect of post-traumatic stress disorder on cerebral ischaemia reperfusion-induced stroke

description: Previous studies have been established that persons who experienced a stroke are soon likely to develop several anxiety disorders. In which one of the major anxiety disorders is Post-traumatic Stress Disorder (PTSD). Yet, the likelihood of PTSD in conjunction with cerebral stroke has not been well described. Hence, we evaluated the impact of PTSD on cerebral stroke in rodents subjected to single prolonged stress (SPS) and bilateral common carotid artery occlusion (BCCAo), respectively. The relation between PTSD and cerebral stroke is evaluated by performing behavioural, biochemical, histopathological, and brain lesion area measurement studies. Interestingly, SPS + BCCAo induction increased behavioural abnormalities like cognitive impairment and anxiety-like behaviour compared to SPS and BCCAo groups alone. Motor impairment was also observed in SPS + BCCAo rats compared to SPS rats, whereas no change with BCCAo rats. Furthermore, increased brain tissue MDA, acetylcholinesterase, and decreased SOD, catalase, and GSH were observed in SPS + BCCAo subjected rats compared to SPS and BCCAo rats alone. Additionally, SPS + BCCAo induction considerably increased the plasma corticosterone levels and caused severe neurotransmitter alterations. The SPS + BCCAo exposure significantly increased the brain lesion area in comparison with BCCAo rats. Moreover, severe histopathological alterations were observed in the hippocampus (CA1) of SPS + BCCAo rats compared to SPS and BCCAo rats alone. In conclusion, our study results suggested that SPS-induced PTSD may aggravate the BCCAo induced cerebral ischaemia-reperfusion injury.
DOI: 10.6084/m9.figshare.14838205.v1
title: A prognostic study on the effect of post-traumatic stress disorder on cerebral ischaemia reperfusion-induced stroke

description: Previous studies have been established that persons who experienced a stroke are soon likely to develop several anxiety disorders. In which one of the major anxiety disorders is Post-traumatic Stress Disorder (PTSD). Yet, the likelihood of PTSD in conjunction with cerebral stroke has not been well described. Hence, we evaluated the impact of PTSD on cerebral stroke in rodents subjected to single prolonged stress (SPS) and bilateral common carotid artery occlusion (BCCAo), respectively. The relation between PTSD and cerebral stroke is evaluated by performing behavioural, biochemical, histopathological, and brain lesion area measurement studies. Interestingly, SPS + BCCAo induction increased behavioural abnormalities like cognitive impairment and anxiety-like behaviour compared to SPS and BCCAo groups alone. Motor impairment was also observed in SPS + BCCAo rats compared to SPS rats, whereas no change with BCCAo rats. Furthermore, increased brain tissue MDA, acetylcholinesterase, and decreased SOD, catalase, and GSH were observed in SPS + BCCAo subjected rats compared to SPS and BCCAo rats alone. Additionally, SPS + BCCAo induction considerably increased the plasma corticosterone levels and caused severe neurotransmitter alterations. The SPS + BCCAo exposure significantly increased the brain lesion area in comparison with BCCAo rats. Moreover, severe histopathological alterations were observed in the hippocampus (CA1) of SPS + BCCAo rats compared to SPS and BCCAo rats alone. In conclusion, our study results suggested that SPS-induced PTSD may aggravate the BCCAo induced cerebral ischaemia-reperfusion injury.
DOI: 10.6084/m9.figshare.14744058
title: Circulating cell-free mitochondrial DNA in brain health and disease: A systematic review and meta-analysis

description: Circulating cell-free mitochondrial DNA (ccf-mtDNA) are detectable fragments of mtDNA released from the cell as a result of mitochondrial dysfunction or apoptosis. The brain is one of the most energy demanding organs in the human body, and many neuropsychiatric and non-psychiatric neurological diseases have mitochondrial dysfunction associated with disease pathophysiology. Thus, we aimed to assess ccf-mtDNA as a potential biomarker for brain diseases. We conducted a systematic review and meta-analyses of studies that examined peripheral and/or cerebrospinal fluid (CSF) ccf-mtDNA relevant to neuropsychiatric conditions, which we define as disorders of affect, behaviour and mood, and non-psychiatric neurological diseases, which consist of neurological diseases not related to psychiatry including neurodegenerative diseases. The results of the sensitivity analysis investigating the levels of peripheral ccf-mtDNA in neuropsychiatric studies showed no significant difference between cases and controls (<i>Z</i> = 1.57; <i>p</i> = 0.12), whereas the results of the sensitivity analysis investigating the levels of CSF ccf-mtDNA in non-psychiatric neurological diseases showed a decreasing trend in cases compared with controls (<i>Z</i> = 2.32; <i>p</i> = 0.02). Interestingly, the results indicate an overall mitochondrial stress associated mainly with non-psychiatric neurological diseases. Our study supports the involvement of mitochondrial stress, here defined as ccf-mtDNA, in brain diseases and encourage further investigation of ccf-mtDNA among patients with brain diseases.
DOI: 10.6084/m9.figshare.14744058.v2
title: Circulating cell-free mitochondrial DNA in brain health and disease: A systematic review and meta-analysis

description: Circulating cell-free mitochondrial DNA (ccf-mtDNA) are detectable fragments of mtDNA released from the cell as a result of mitochondrial dysfunction or apoptosis. The brain is one of the most energy demanding organs in the human body, and many neuropsychiatric and non-psychiatric neurological diseases have mitochondrial dysfunction associated with disease pathophysiology. Thus, we aimed to assess ccf-mtDNA as a potential biomarker for brain diseases. We conducted a systematic review and meta-analyses of studies that examined peripheral and/or cerebrospinal fluid (CSF) ccf-mtDNA relevant to neuropsychiatric conditions, which we define as disorders of affect, behaviour and mood, and non-psychiatric neurological diseases, which consist of neurological diseases not related to psychiatry including neurodegenerative diseases. The results of the sensitivity analysis investigating the levels of peripheral ccf-mtDNA in neuropsychiatric studies showed no significant difference between cases and controls (<i>Z</i> = 1.57; <i>p</i> = 0.12), whereas the results of the sensitivity analysis investigating the levels of CSF ccf-mtDNA in non-psychiatric neurological diseases showed a decreasing trend in cases compared with controls (<i>Z</i> = 2.32; <i>p</i> = 0.02). Interestingly, the results indicate an overall mitochondrial stress associated mainly with non-psychiatric neurological diseases. Our study supports the involvement of mitochondrial stress, here defined as ccf-mtDNA, in brain diseases and encourage further investigation of ccf-mtDNA among patients with brain diseases.
DOI: 10.25919/yv80-h144
title: Parkes observations for project P990 semester 2021OCTS_01

description: The only published instance of natural, fast-switching, stimulated OH emission was observed toward PSR B1641-45. Without having to move the beam, the natural ON and OFF signals in the time-domain from a pulsar were successfully utilized as a unique tool for probing microphysics as well as ISM structures. The amplification of pulsar photons by intervening gas, presumably with non-LTE excitation, also demonstrate a feasible principle for interstellar communication by extraterrestrial intelligence. Recently, we have carried out systematic studies of OH and CH ?-doubling transitions, showing that they both well trace the so-called “dark-molecular-gas”. The similarity in their astrochemical conditions, distribution, and energy level structures, motivate us to try to detect stimulated emission in CH, toward a small sample of sources showing OH absorption against pulsars. If successful, this will be the 2nd such detection as well as the first in a species other than OH. We have successfully processed UWL baseband data to confirm Weisberg et al. (2005) results with potential new results, and thus confident of the feasibility of the proposed observations. We thus propose to obtain emission, absorption, and stimulated emission of HI, OH, and CH, simultaneously. A combined analysis of stimulated emission (or non-detection) with multiple other emission/absorption components in the Parkes beam, will significant improve our understanding of ISM.
DOI: 10.6084/m9.figshare.19134071
title: Norman et al. 2019

description: shRNA perturbation dataset from Norman et al. 2019. `_raw` contains the preprocessed data.
DOI: 10.6084/m9.figshare.19134071.v2
title: Normal et al. 2019

description: shRNA perturbation dataset from Norman et al. 2019. `_raw` contains the preprocessed data.
DOI: 10.25345/c5tt4fx45
title: MassIVE MSV000089107 - GNPS - Mass spectral molecular networking to decode the chemical space of biostimulant Bacillus strains
title: Intracellular extracts of Bacillus spp grown on LB liquid media.
DOI: 10.6084/m9.figshare.14068241
title: Psychometric Assessment of the Persian Translation of the Interpersonal Mindfulness Scale with Undergraduate Students

description: Interpersonal mindfulness is a construct that significantly contributes to social interaction. <br> To date, no validated measure assessing interpersonal mindfulness has been developed in Iran. Therefore, the aim of this study was to translate and validate the Interpersonal Mindfulness Scale (IMS; Pratscher et al., 2019) among Iranian undergraduate students
DOI: 10.7303/syn25880718
title: Transcriptional landscape of human microglia implicates age, sex and APOE-related immunometabolic pathway perturbations
DOI: 10.5281/zenodo.6380332
title: InpactorDB: A Plant classified lineage-level LTR retrotransposon reference library for free-alignment methods based on Machine Learning

description: LTR retrotransposons are mobile elements that make up the major part of most plant genomes. Their identification and annotation via bioinformatics approaches represent a major challenge in the era of massive plant genome sequencing. In addition to their involvement in the variation in genome size, these elements are also associated in the function and structure of different chromosomal regions and in the alteration of the function of coding regions, among others. Several plant retrotransposon sequence databases of LTR retrotransposons are available with public access such as PGSB, RepetDB or restricted access such as Repbase. Although they are useful for approaches to identify LTR-RTs in new genomes by similarity, the elements of these databases are not classified down to the lineage/family level. with great depth. Here, we present InpactorDB a semi-curated dataset composed of 130,511 elements from 195 plant genomes (belonging to 108 plant species), classified down to the lineage level. This data set has been used to train two deep neural networks (one fully connected and one convolutional) for fast classification of elements. Used in lineage-level classification approaches, we obtain a score above 98% of F1-score, precision and recall. In order to classify elements of the ‘LTR_STRUC’ and ‘EDTA’ datasets, we used the methodology proposed by Inpactor, which uses homology-based strategy with known coding domains belonging to LTR-RTs. We utilized the RexDB domain library as reference. LTR-RTs were classified into superfamilies, Gypsy (RLG) or Copia (RLC) and sub-classified into lineages according to the similarities of five different amino acid reference domains (GAG, AP, RT, RNAseH, and INT domains). In addition, we applied filters to remove keep only intact elements: 1) to remove predicted elements with domains from two different superfamilies (i.e. Gypsy and Copia), 2) or elements with domains belonging to two or more different lineages, 3) to remove elements with lengths different than those reported by Gypsy Database (GyDB) with a tolerance of 20%, 4) to delete incomplete elements which has less than three identified domains, and 5) to remove elements with insertions of TE class II (reported in Repbase). The final non-redundant version of InpactorDB consists of 67,305 LTR retrotransposons. Both redundant and non-redundant versions of InpactorDB are available in Fasta format in which sequences have identifiers with the following general Identification code: &gt;Superfamily-Lineage-plant_family-specie-source-length-ID, Where Superfamily can is either RLC (for Copia) or RLG (for Gypsy), Lineage/family follows following the RexDB nomenclature, source (can be Repbase, RepetDB, PGSB, LTR_STRUC or EDTA datasets), length, and ID, is a unique number which identify each element inside the InpactorDB.