cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.525vm/1
title: regression.dat_nurseries_ADW2.Rdat

description: This R data frame contains 1353 rows corresponding to the international trials in the CIMMYT database used in this study.  The column names should be self-descriptive, and contain all the predictors used for this regression analysis.
DOI: 10.5061/dryad.55t54/1
title: Gardner et al. dryad submission
DOI: 10.5061/dryad.55t60/9
title: Figure 4 (a)

description: R script computing and plotting the estimated probability of persistence of susceptible rats S and infectious rats I through time, in a non structured population of K=25,000 rats. To get Figures 4(b) and 4(c), only the parameter values need to be modified in this file.
DOI: 10.5061/dryad.5cp20/1
title: Fig2

description: This file contains the Matlab m-files necessary to produce Fig 2 of the main article
DOI: 10.5061/dryad.5cp20/2
title: Fig3

description: This contains the Matlab m-files necessary to generate Fig. 3 of the main article.
DOI: 10.5061/dryad.5cp20/3
title: FigsC1_C2_C3

description: This contains the Matlab m-files necessary to generate Figs. C1, C2 and C3 of the online supplement.
DOI: 10.5061/dryad.5cp20/4
title: FigsC4_C5

description: This contains the Matlab m-files necessary to generate Figs. C4 and C5 of the online supplement.
DOI: 10.5061/dryad.635md/1
title: Lactating squirrel daily energy expenditure data

description: File containing daily energy expenditure data of lactating female squirrels and other variables associated with these values.
DOI: 10.5061/dryad.635md/2
title: Red squirrel pruned pedigree

description: Pedigree of all the individuals exposed to the doubly labelled water technique and all its known ancestors. Individuals that were not related to the squirrel exposed to the doubly labelled water technique have been removed from this pedigree (i.e. these individuals have been pruned from the pedigree).
DOI: 10.5061/dryad.7751k/1
title: DRYAD HEREDITY

description: Morphological, Genetic and climatic estimates for the study populations
DOI: 10.5061/dryad.788k6/2
title: DataAccessibility
DOI: 10.5061/dryad.7db1n/1
title: Complete-Dataset-ProcB

description: Data collected in all phenotype and viral accumulation experiments (in separate spreadsheets)
DOI: 10.5061/dryad.7k14q/16
title: Table S7

description: Tests of diversification models in Laser
DOI: 10.5061/dryad.7m6kg/12
title: Fig. 3a: Bioturbation in Nectocaris ?pteryx from Chengjiang

description: HKMF-50001
DOI: 10.5061/dryad.7m6kg/15
title: Bioturbation in Nectocaris ?pteryx from Chengjiang

description: HK-MF-00002, Chengjiang specimen; axial cavity decimated by burrowing.
DOI: 10.5061/dryad.7m6kg/16
title: Figs. 4a & 9a: ROM 59658 – Nectocaris pteryx from the Burgess Shale

description: ROM 59658, composite interference image of part and counterpart, showing coarse stripes, fine striations, and folding of fin margin
DOI: 10.5061/dryad.7m6kg/26
title: Fig. 4b: ROM 60079 – Nectocaris pteryx from the Burgess Shale

description: Part, interference image of crossed polars and direct illumination
DOI: 10.5061/dryad.7m6kg/62
title: Fig. 10i: Reconstruction of nectocaridid internal anatomy (3D model)

description: 3D model used to generate Fig. 10i.  Blender file format.
DOI: 10.5061/dryad.7m6kg/72
title: Fig. 11c: ANSK-20001 — Nectocaris ?pteryx (anterior), large morph from Chengjiang

description: Magnification of anterior region of specimen
DOI: 10.5061/dryad.880f5/1
title: Alignment Justi et al 2014

description: nexus file, with the alignment and MrBayes block withe parameters used in the analysis.
DOI: 10.5061/dryad.8909j/1
title: Average temperature experiment - Cayetano & Vorburger 2013

description: 'temp' lists the average temperatures in degrees Celsius that the replicates in the study were exposed to. 'day' means the day on which the replicates were exposed to processed. The experiment had a block design, with four blocks exposed to the heat treatments on the first day, and three blocks on the second. 'a_line' lists the aphid sublines, desigated as either '407' (an uninfected line), or some other number that designates an endosymbiont isolate with which the aphids in that subline are infected (eg. '402' means that the subline is infected in with endodymbiont 402). 'n_exposed' means the number of juvenile aphids exposed to the wasps (this variable is called 'colony size' in the manuscript). 'ang_p_mumm' is the arcsine square root tranformed proportion of aphids mummified. RES_1 are the residuals resulting from a full factorial general linear model with n_exposed as the covariate, ang_p_mumm' as the response variable and 'temp', 'a_line' and 'p_line' (parasitoid lines) as the fixed factors.
DOI: 10.5061/dryad.8f13v/1
title: All_Data_Density_Expt

description: Excel file containing data on herbivore use (dung counts, camera trap data), grass production, grass composition and nutrients, and visibility in a replicated manipulation of tree density.
DOI: 10.5061/dryad.8fg95/2
title: 2010 data.

description: Short term behavioural changes. ID= Individaul identifier, observer_cap= person who captured individual, before= timing of the observation (before or after takeover), disperser: 0=heir, 1=disperser, pred_def_foc= Frequency of territory defence, sub_grp_mem= Frequency of sumbission, tot_dig=frequency of territory maintenence, log_tot_dig= natural log of "tot_dig", agg_strangers= frequency of territory defence against non group members
DOI: 10.5061/dryad.983b0/10
title: psbA

description: Alignment for psbA of Symbiodinium B1
DOI: 10.5061/dryad.983b0/5
title: EF1A

description: Alignment for Elongation Factor 1 alpha (ef1)
DOI: 10.5061/dryad.983b0/6
title: ct2

description: Alignment for Calcium transporter 2 (ct2)
DOI: 10.5061/dryad.983b0/7
title: msh

description: Alignment for the mitochondrial mismatch repair gene (msh)
DOI: 10.5061/dryad.983b0/8
title: HZAR_cline_character_frequencies

description: Input file used for HZAR. Contains frequency data for all characters, including host and symbiont genotypes and host morphology
DOI: 10.5061/dryad.983b0/9
title: HZAR locations

description: Contains the information about the distance in the transect for each population
DOI: 10.5061/dryad.9b56t/1
title: German-speaking AMEE participation 2005-2013
DOI: 10.5061/dryad.9fd75/1
title: Feeding_Assays

description: Data from feeding assays for all herbivore-plant pairings. Data include herbivore species, plant species, temperature, raw data for consumption and growth measurements as well as derived statistics (consumption, percent loss, and relative growth rate)
DOI: 10.5061/dryad.9fd75/2
title: TempCons_PlantTraits

description: Nutritional traits for all plant species used in this study
DOI: 10.5061/dryad.bs385/1
title: PO and Lytic for Plodia selection lines

description: Excel data file for both phenoloxidase and lytic analyses. FB = female biased lines, MB = male-biased lines and ESR = equal sex ratio lines.
DOI: 10.5061/dryad.c6f1g/1
title: Urban et al. Oikos data for dryad

description: Raw data from field surveys of oomycete infections in 2010 and 2011 as well as infection results from transplant experiment.
DOI: 10.5061/dryad.cg873/4
title: swounds.py

description: This code opens the .npz files (compressed NumPy files). Use this code to access the summed X-ray diffraction images and find the intensity of the equatorial reflections.
DOI: 10.5061/dryad.gg3f1/1
title: Kurth_et_al._call_Melanophryniscus_script_Appendix_S1

description: R script for semiautomatic processing of sound files (*.wav)
DOI: 10.5061/dryad.kn3d0/7
title: hemi_soc_cyb_all-hap

description: Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of mitochondrial gene cyb
DOI: 10.5061/dryad.kn3d0/8
title: hemi_soc_mc1r_all-hap

description: Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of nuclear protein coding gene mc1r
DOI: 10.5061/dryad.kn3d0/9
title: hemi_soc_ND4_all-hap

description: Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of mitochondrial gene ND4
DOI: 10.5061/dryad.kt09v/2
title: Experiment2
DOI: 10.5061/dryad.mq5ct/1
title: Lal2/SRK alignment for entire coding sequence

description: Nexus-formatted alignment of the full coding sequence for SRK and Lal2 sequences included in Figure 2-A. Includes commands used for phylogenetic inference in mrbayes.
DOI: 10.5061/dryad.mq5ct/3
title: Lal2/SRK alignment for coding sequence excluding S-domain

description: Nexus-formatted alignment of the coding sequence excluding the S-domain for SRK and Lal2 sequences included in Figure S3-B. Includes commands used for phylogenetic inference in mrbayes.
DOI: 10.5061/dryad.n630t/1
title: Simulation_script

description: R code used in paper to test the power of our analyses to reject the null hypothesis of panmictic mating between New Zealand and southwest Australia right whale subpopulations.
DOI: 10.5061/dryad.n63q1/3
title: ITS

description: Alignment of ITS region (ITS1, 5.8SrRNA, ITS2) of Ctenophores.
DOI: 10.5061/dryad.n63q1/4
title: ITS_GB

description: Alignment of ITS region (ITS1, 5.8SrRNA, ITS2) of Ctenophores after use of G-blocks.
DOI: 10.5061/dryad.pb3tr/1
title: AFLP loci

description: The zip file contains three sheets of AFLP loci of Kandelia obovata, the neutral loci, the negative-outlier loci, and the positive outlier loci.
DOI: 10.5061/dryad.pg4m7/3
title: Males
DOI: 10.5061/dryad.pr76b/1
title: lifetime_fecundity_survival

description: File name:  lifetime_fecundity_survival.xls. Contents:  Contains total number of offspring produced per replicate, no. of eggs produced per replicate, and number of reproductive bouts.  Tab 2:  lifespan per replicate. Columns:  lake type = anadromous, landlocked, or no alewife, replicate lake, clone per lake, experimental temperature, and individual trait value.  Offspring = total number of offspring produced, eggs_per_clutch = no. of offspring produced per clutch, no_clutches = total number of clutches.
DOI: 10.5061/dryad.pr76b/2
title: Survival

description: File name:  survival.xls. Contents:  proportion alive per lake and temperature; Tab1 = high temperature, Tab2 = low temperature. Columns:  Day and proportion alive for each lake.
DOI: 10.5061/dryad.pr76b/3
title: lifetimefecundity_rawdata

description: File name:  lifetime_fecundity_rawdata.xls. Contents:  no. of offspring produced per clutch per clone per lake.
DOI: 10.5061/dryad.q0158/1
title: Microarray data

description: CEL files containing data collected for yeast experiments
DOI: 10.5061/dryad.r37rm/1
title: EXCEL spreadsheet containing data for the tree lizard spatial network paper

description: This EXCEL file includes six tabs which contain all of the raw data used for our spatial network paper. Please consult the Readme file for content details and the paper itself for programs/R packages/functions used to analyze each set of data.
DOI: 10.5061/dryad.rk775/1
title: Birds_100chronograms

description: Phylogenetic trees (100 best ML chronograms) of all study species
DOI: 10.5061/dryad.tr16k/3
title: Melon_Vacc

description: This file contains data on CMV viral accumulation (µg virus/g tissue fresh weight) on melon plants infected by CMV with or without satRNAs (semicolon delimited format). Data was used to estimate CMV transmissibility and transmission parameters according to the experimetal regression of CMV transmissibility (F) on viral accumulation (V): F= 0,127707+0,000208373V (R^2=0.7680, P&lt;0.0001), see Betancourt, et al., 2011. (Journal of General Virology, 92, 1930–1938).
DOI: 10.5061/dryad.v1908/8
title: Plant Data - Final

description: Plant data on sexual system and chromosome numbers, based on published literature (19 May 2014 freeze).  Zip file includes database, with expanded references in a separate file and personal communications.
DOI: 10.5061/dryad.v1908/9
title: Invertebrate Data - Final

description: Invertebrate data on sexual system and chromosome numbers, based on published literature (19 May 2014 freeze).
DOI: 10.5061/dryad.v3t5g/1
title: JEB-2014-00330.R1

description: The data file includes 8 tables. Each table refers to a different life history traits.
DOI: 10.5061/dryad.vp4n8/1
title: microsatellite data

description: all abbreviations are given in Journal of Heredity article
DOI: 10.5061/dryad.1b549/1
title: Sex Ratio
DOI: 10.5061/dryad.20r9k/12
title: Rhinolophus_contigs.tar

description: Contigs assembled for lesser horseshoe bat
DOI: 10.5061/dryad.2bs8g/2
title: StxSf RIL genotypes for dryad - VV Symonds

description: Genotype file for the StxSf RIL mapping population.The first row is marker names, second row is chromosome number, and third row is position in cM based on linkage maps used in the publication.
DOI: 10.5061/dryad.2j9p4/1
title: Liu et al. - LiveImaging_data_structure

description: LiveImaging_data_structure.mat contains a data structure named "FlyLines" with Bicoid-GFP intensity gradient and cephalic furrow (CF) position measurements of fly embryos from live two-photon imaging for 29 fly lines.
DOI: 10.5061/dryad.2j9p4/2
title: Liu et al. - Immunofluorescence_data_structure

description: ImmunoFluorescence_data_structure.mat contains a data structure named "Sessions" that contains raw gap ( Hb, Kr, Gt and Kni) and pair rule (Eve) gene expression (protein) intensity profiles measured using immunofluorescence imaging for fly embryos during n.c. 14 for 6 fly lines from our Bicoid-GFP fly line library.
DOI: 10.5061/dryad.2j9p4/3
title: Liu et al. - BcdGFP_embryos_raw_data

description: High-resolution images of 28 embryos acquired by live two-photon microscopy; dorsal view, coronal plane (linear pixel dimension 0.46 micrometer). Embryos express Bcd-GFP fusion protein in a bcdE1 null mutant background (flyline 2XA). For 23 embryos two time points are provided: 16+/-2 min after mitosis 13 (for Bicoid gradient measurement) and 67+/-2 min after mitosis 13 (for cephalic furrow position measurement). Two additional embryos are provided for early time point (09 and 12); three additional embryos are provided for late time point (15, 24 and 28). Embryo 05 is missing from dataset. This dataset reproduces gradients in Figure 1C of main text.
DOI: 10.5061/dryad.2s07g/1
title: Etheostoma boschungi GENEPOP format

description: The microsatellite DNA data file is in GENEPOP format. The file includes genotype scores for seven darter specific microsatellite loci. Locus names are listed under the title line at the top of the file. POP refers to populations described in the manuscript. The six populations are ordered as follows (CB, DD, CH/SH, NF/SF, SW, and FL). Each row below POP identifiers represents an individual followed by their genotype for the seven loci. Allele scores for each locus are concatenated into six digits, with the first three numbers representing the size of allele "one" and the second three numbers representing the size of allele "two". Missing data are coded as "000".
DOI: 10.5061/dryad.2s07g/2
title: Etheostoma tuscumbia GENEPOP format

description: The microsatellite DNA data file is in GENEPOP format. The file includes genotype scores for seven darter specific microsatellite loci. Locus names are listed under the title line at the top of the file. POP refers to populations described in the manuscript. The 13 populations are ordered as follows (TS, BF, WH, PY, LM, TH, PK, BD, KL, BY, BR, MV, and WC). Each row below POP identifiers represents an individual followed by their genotype for the seven loci. Allele scores for each locus are concatenated into six digits, with the first three numbers representing the size of allele "one" and the second three numbers representing the size of allele "two". Missing data are coded as "000".
DOI: 10.5061/dryad.407j1/1
title: Simulations_Hartfield2012_JEB

description: README.TXT FOR SIMULATION FILES: These files are the source code for the one-dimensional and two-dimensional population simulations used in the Hartfield 2012 paper "A framework for estimating the fixation time of an advantageous allele in stepping-stone models". Simulations are written in C and need to be compiled prior to execution. See blurb at start of each program for description and how to execute. Please also note that simulations use routines that are part of the GNU Scientific Library (GSL). Since GSL is distributed under the GNU General Public License (http://www.gnu.org/copyleft/gpl.html), you must download it separately from these files. Comments should be sent to Matthew Hartfield (m.hartfield@sms.ed.ac.uk).
DOI: 10.5061/dryad.40rd6/1
title: WAEtet

description: fasta file of Cytochrome oxidase I sequences.
DOI: 10.5061/dryad.40rd6/2
title: WAsats_final

description: An XL spreadsheet in GenAlEX format of microsatellite scores from five loci.
DOI: 10.5061/dryad.435s1/1
title: Microsatellite genotypes

description: Microsatellite genotypes for 38 Fraxinus angustifolia populations sampled across Europe and genotyped at 6 SSR loci
DOI: 10.5061/dryad.49k85/1
title: Supplemental Data File
DOI: 10.5061/dryad.49v70/1
title: Longevity_Data_Heredity

description: Longevity data (median time of death) that was correlated with Yp expression in this paper.
DOI: 10.5061/dryad.4df03/1
title: Air temperature data used by Mitton and Ferrenberg

description: Air temperature and growing degree day calculations for Mitton and Ferrenberg's reply to Bentz and Powell. This temperature data was pulled from raw data for 1953-present are available through the University of Colorado's Institute for Arctic and Alpine Research. The data presented are from the C-1 climate station located at the Niwot Ridge LTER site, 3018 m above sea level in Boulder County, Colorado, USA.
DOI: 10.5061/dryad.4rj2s/1
title: Database 1

description: This file contains all the information from the individual diet samples of Cory's shearwaters analyzed, including morphological and genetic identifications of prey (and respective Genbank accession numbers).
DOI: 10.5061/dryad.4rj2s/2
title: Database 2

description: This file includes the dataset used to calculate the frequencies of occurrence and numerical frequencies of prey (See the Results section and the Table 2) and to build the figures 2 and 3.
DOI: 10.5061/dryad.4rj2s/3
title: Frequency_of_Occurence_Alonso_et_al

description: This file contains the dataset used to perform all the analyses with the R Program (See Table 3 and Results subsections: "Diet of non-breeders", "Sex and inter-annual variations in diet", "Seasonal variations in diet").
DOI: 10.5061/dryad.4rj2s/4
title: GLM_Analysis_Table3_Adonis

description: This file contains the R-codes and scripts used in the analysis present on Table 3 and Results subsections ("Diet of non-breeders", "Sex and inter-annual variations in diet", "Seasonal variations in diet".
DOI: 10.5061/dryad.4rj2s/5
title: Alignment_Carangidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/6
title: Alignment_Exocoetidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/7
title: Alignment_Halosauridae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/8
title: Alignment_Histioteuthidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.5s63b/1
title: Liao & Harder visit data

description: Observations of bumble bee behavior on artificial 18-flowered plants with one inflorescence, three closely spaced inflorescences, or three widely spaced inflorescences. See "Variables" worksheet for explanation of columns in "Visit" worksheet.
DOI: 10.5061/dryad.5s63b/2
title: Liao & Harder simulation data

description: Results of simulations of plant mating based on observed bee behavior on artificial 18-flowered plants with one large inflorescence, three closely spaced 6-flowered inflorescences, or three widely spaced 6-flowered inflorescences.  Results in the "bisexual" worksheet are from a simulation in which all flowers both donated and received pollen, whereas those in the "protandry" worksheet are from a simulation in which lower flowers received pollen and upper flowers donated pollen. See the "Variables" worksheet for descriptions of the data in the columns of the "bisexual" and "protandry" worksheets.
DOI: 10.5061/dryad.7187d/1
title: Appendix A. Data. Vinicius and Mumby

description: Growth curves, life history data and growth data from conception.
DOI: 10.5061/dryad.7m6kg/25
title: Fig. 4b: ROM 60079 – Nectocaris pteryx from the Burgess Shale

description: Part, crossed polars
DOI: 10.5061/dryad.7sq2j/1
title: Bondetal_data

description: Mesquite generated NEXUS file of aligned DNA sequences and morphological character matrix and associated tree files for all combined and independent analyses.
DOI: 10.5061/dryad.84t05/1
title: cunei_HZ_morphometric_data_12Feb2012
DOI: 10.5061/dryad.8dd3n/4
title: Roche 454 sequence quality plot

description: Frequency plot of phred quality scores from the total number of reads obtained from 454 sequencing
DOI: 10.5061/dryad.8fg95/1
title: Long term data from 2009

description: ID= individual, Disperser: 0=heir 1=disperser, agg_gm= frequency of agression against group members,	agg_ngm= frequency of agression against non-group members, sub_gm= frequency of submission,	pred_def= frequency of defence against predators, dig_tot= frequency of territory maintenance; each line represents a case
DOI: 10.5061/dryad.8m405/1
title: Baboon foraging decision data

description: Raw data used in the analysis. See ReadMe file for details.
DOI: 10.5061/dryad.8m405/2
title: Patch preference models 95% confidence sets

description: This supplement (1) briefly outlines the model averaging process used to calculate the final models presented in the paper, and (2) tabulates the 95% confidence sets of the candidate models used in each of these averaging processes.
DOI: 10.5061/dryad.9c568/3
title: HIV2ge tree
DOI: 10.5061/dryad.9n815/2
title: trnL sequences and taxonomic assignments NGS
DOI: 10.5061/dryad.9vq45n5s/1
title: data_phenotypes

description: The table contains data on phenotypes of all individuals (IndID). Column 'sex' gives the sex of the bird (0=female, 1=male). Column 'alive' states whether the bird was measured as dead or alive (0=dead, 1=alive). 'F' gives the inbreeding coefficient. 'mat_env' and 'FBroodID' identify the mother and the brood of rearing. 'length', 'depth' and 'width' give the phenotypes for beak length, beak depth and beak width, respectively. Missing values are coded as '-999'.
DOI: 10.5061/dryad.b1t2b/1
title: Scofield-AJB-2006-DATA

description: Pith cell sizes within pith segments, nested within primary branch, nested within tree. See the README.txt and the paper for further details.
DOI: 10.5061/dryad.b6225/4
title: Table S3

description: Testing for rate variation in the original dataset including missing species and biogeographic clades using the maximum likelihood ΔAIC test statistic.
DOI: 10.5061/dryad.b6225/6
title: Figure S1 cont.

description: Individual gene trees of Synodontis relationships inferred from Bayesian analyses for a) mitochondrial Cytochrome oxidase I (COI), b) mitochondrial Cytochrome b (Cyt b + tRNA-pro), c) nuclear S7 ribosomal protein intron 1 and 2 (S7) and d) nuclear recombination activating gene (Rag 2). Taxa are colour coded according to the biogeographical clade they nest within based on Figure 2: purple, Congo Basin; blue, East Africa; green, West Africa (light green WA NS; dark green WA LGF). BPP values include black circle: &gt;85%; black square 70-84%.
DOI: 10.5061/dryad.c2090/1
title: Trachymyrmex data archive

description: We include 7 excel sheets, Workers allometries, Colony forming units, Nuber of sporulating conidia, Proportion of sporuling conid(ia),  Workers actinomyetes cover, Colony size, and MG grooming and actinomyctes. The data from each sheets have all the information corresponds. All the data from come Panama.
DOI: 10.5061/dryad.c521p/1
title: Data_Personality-Life-history
DOI: 10.5061/dryad.c521p/2
title: Data_Personality_Growth-continuous
DOI: 10.5061/dryad.c521p/3
title: Data_Personality_Reproductive-rate
DOI: 10.5061/dryad.fp861/1
title: Raw data and analytical code
DOI: 10.5061/dryad.g0b20/2
title: 28S

description: Alignment of partial 28S ribosomal gene of Zanclea sp. associated with different Scleractinia species