cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7985960
title: Additional file 1: of Analysis of the coding sequences of clownfish reveals molecular convergence in the evolution of lifespan

description: Table S1. Clownfish lifespan questionnaire results. Table S2. PosiGene results for positively selected genes on the phylogenetic branch representing the last common ancestor of the clownfishes (genus Amphiprion). Table S3. Enrichment test results of the biological gene ontology processes enriched for positively selected genes. Table S4. Meta analysis using Fisher’s method of positive selection across three analyses of phylogenetic branches on which lifespan changed considerably. Table S5. Meta analysis using Fisher’s method of positive selection across three phylogenetic branches of the Nothobranchius genus on which the lifespan was reduced considerably. Table S6. Meta analysis using Fisher’s method of positive selection across eleven phylogenetic rodent branches on which the lifespan was reduced considerably. Table S7. Genes that were regarded as mitochondrial biogenesis related from five gene ontology terms. Table S8. PosiGene results for positively selected genes on the phylogenetic branch representing Chromis viridis. Table S9. PosiGene results for positively selected genes on the phylogenetic branch representing Cavia porcellus. Table S10. PosiGene results for positively selected genes on the phylogenetic branch representing Aphysemion striatum. Table S11. Meta analysis using Fisher’s method of positive selection across three analyses of phylogenetic branches on which the lifespan did not change considerably. Table S12. Assembly and sequence statistics. Table S13. Samples that were sequenced to create genome/transcriptome assemblies. (XLSX 6532 kb)
DOI: 10.6084/m9.figshare.7985960.v1
title: Additional file 1: of Analysis of the coding sequences of clownfish reveals molecular convergence in the evolution of lifespan

description: Table S1. Clownfish lifespan questionnaire results. Table S2. PosiGene results for positively selected genes on the phylogenetic branch representing the last common ancestor of the clownfishes (genus Amphiprion). Table S3. Enrichment test results of the biological gene ontology processes enriched for positively selected genes. Table S4. Meta analysis using Fisher’s method of positive selection across three analyses of phylogenetic branches on which lifespan changed considerably. Table S5. Meta analysis using Fisher’s method of positive selection across three phylogenetic branches of the Nothobranchius genus on which the lifespan was reduced considerably. Table S6. Meta analysis using Fisher’s method of positive selection across eleven phylogenetic rodent branches on which the lifespan was reduced considerably. Table S7. Genes that were regarded as mitochondrial biogenesis related from five gene ontology terms. Table S8. PosiGene results for positively selected genes on the phylogenetic branch representing Chromis viridis. Table S9. PosiGene results for positively selected genes on the phylogenetic branch representing Cavia porcellus. Table S10. PosiGene results for positively selected genes on the phylogenetic branch representing Aphysemion striatum. Table S11. Meta analysis using Fisher’s method of positive selection across three analyses of phylogenetic branches on which the lifespan did not change considerably. Table S12. Assembly and sequence statistics. Table S13. Samples that were sequenced to create genome/transcriptome assemblies. (XLSX 6532 kb)
DOI: 10.6084/m9.figshare.12874140.v1
title: Additional file of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
DOI: 10.6084/m9.figshare.12874116.v1
title: Additional file 2 of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file 2: Vibrio parahaemolyticus Single Nucleotide Polymorphisms. Single Nucleotide Polymorphisms of V. parahaemolyticus genomes relative to reference strain RIMD2210633 (XLS 5 MB)
DOI: 10.6084/m9.figshare.12874140.v2
title: Additional file of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
DOI: 10.6084/m9.figshare.12874113.v1
title: Additional file 1 of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file 1: Vibrio parahaemolyticus Ortholog Match Table. BLAST-based ortholog Match Table of V. parahaemolyticus strains (XLS 2 MB)
DOI: 10.6084/m9.figshare.12874113
title: Additional file 1 of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file 1: Vibrio parahaemolyticus Ortholog Match Table. BLAST-based ortholog Match Table of V. parahaemolyticus strains (XLS 2 MB)
DOI: 10.6084/m9.figshare.12874116
title: Additional file 2 of Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence

description: Additional file 2: Vibrio parahaemolyticus Single Nucleotide Polymorphisms. Single Nucleotide Polymorphisms of V. parahaemolyticus genomes relative to reference strain RIMD2210633 (XLS 5 MB)
DOI: 10.6084/m9.figshare.7985897
title: MOESM1 of A large scale of apparent sudden movements in Japan detected by high-rate GPS after the 2011 Tohoku Mw9.0 earthquake: Physical signals or unidentified artifacts?

description: Additional file 1. The sudden displacements between 14:59:45 and 14:59:46 after the 2011 Tohuku Mw9.0 earthquake.
DOI: 10.6084/m9.figshare.7985897.v1
title: MOESM1 of A large scale of apparent sudden movements in Japan detected by high-rate GPS after the 2011 Tohoku Mw9.0 earthquake: Physical signals or unidentified artifacts?

description: Additional file 1. The sudden displacements between 14:59:45 and 14:59:46 after the 2011 Tohuku Mw9.0 earthquake.
DOI: 10.6084/m9.figshare.7985867
title: Additional file 2: of Maize synthesized benzoxazinoids affect the host associated microbiome

description: Supplementary files (SFL). The supplementary file consist of all the raw files (such as OTU tables, mapping files) and data analysis used in this study. (ZIP 331 kb)
DOI: 10.6084/m9.figshare.7985867.v1
title: Additional file 2: of Maize synthesized benzoxazinoids affect the host associated microbiome

description: Supplementary files (SFL). The supplementary file consist of all the raw files (such as OTU tables, mapping files) and data analysis used in this study. (ZIP 331 kb)
DOI: 10.6084/m9.figshare.7985858
title: Additional file 1: of Maize synthesized benzoxazinoids affect the host associated microbiome

description: Supplementary figures and tables. This file contains supplementary Figures S1â S8 and Tables S1â S16. (ZIP 1563 kb)
DOI: 10.6084/m9.figshare.7985852
title: MOESM1 of Molecular detection of Rickettsia felis in dogs, rodents and cat fleas in Zambia

description: Additional file 1: Table S1. Criteria for Rickettsia species detection and annotation. Table S2. Detailed description of mosquito species sampled and analyzed, and sampling places in Zambia.
DOI: 10.6084/m9.figshare.7985849
title: Additional file 1: of Realistic propagation effects on wireless sensor networks for landslide management

description: Data set of simulation and experimental results. (XLSX 60 kb)
DOI: 10.6084/m9.figshare.7985852.v1
title: MOESM1 of Molecular detection of Rickettsia felis in dogs, rodents and cat fleas in Zambia

description: Additional file 1: Table S1. Criteria for Rickettsia species detection and annotation. Table S2. Detailed description of mosquito species sampled and analyzed, and sampling places in Zambia.
DOI: 10.6084/m9.figshare.7985858.v1
title: Additional file 1: of Maize synthesized benzoxazinoids affect the host associated microbiome

description: Supplementary figures and tables. This file contains supplementary Figures S1â S8 and Tables S1â S16. (ZIP 1563 kb)
DOI: 10.6084/m9.figshare.7985849.v1
title: Additional file 1: of Realistic propagation effects on wireless sensor networks for landslide management

description: Data set of simulation and experimental results. (XLSX 60 kb)
DOI: 10.5284/1081257
title: The Archaeology of East Oxford

description: Open access monograph. Summative output from Oxford University / Community Archaeology research project based on eastern district of City of Oxford (UK).
DOI: 10.6084/m9.figshare.7985684
title: KITTI .hkl files

description: The .hkl weights for training PredNet on the KITTI dataset, created with an updated hickle version.
DOI: 10.6084/m9.figshare.7985672
title: Game of Life .hkl files

description: The glider and random data for training prednet.
DOI: 10.6084/m9.figshare.7985663
title: Oral microbiome gene catalog cluster file, 95% nucleotide identity

description: Gene cluster data for non-redundant microbial gene catalog (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.<br>
DOI: 10.6084/m9.figshare.7985666
title: Data analysis and results

description: This fileset includes raw and analysis data by mercury injection, thin section and fracture surfaces techique
DOI: 10.6084/m9.figshare.7985669
title: canu-metawrap-bins.rar

description: assembled bins assembled contigs by different tools
DOI: 10.6084/m9.figshare.7985669.v1
title: canu-metawrap-bins.rar

description: assembled bins assembled contigs by different tools
DOI: 10.6084/m9.figshare.7985672.v1
title: Game of Life .hkl files

description: The glider and random data for training prednet.
DOI: 10.6084/m9.figshare.7985648
title: Oral microbiome gene catalog, 95% nucleotide identity

description: Non-redundant microbial gene catalog (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7985663.v1
title: Oral microbiome gene catalog cluster file, 95% nucleotide identity

description: Gene cluster data for non-redundant microbial gene catalog (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>
DOI: 10.6084/m9.figshare.7985636
title: Oral microbiome gene catalog, 50% amino acid identity

description: Non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7985636.v1
title: Oral microbiome gene catalog, 50% amino acid identity

description: Non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7985645
title: Oral microbiome gene catalog gene cluster file, 50% amino acid identity

description: Gene clusters for non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.<br>
DOI: 10.6084/m9.figshare.7985648.v1
title: Oral microbiome gene catalog, 95% nucleotide identity

description: Non-redundant microbial gene catalog (clustered at 95% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. It is a fasta file containing the sequences of the consensus genes – the longest genes in each cluster – as well as their ID's. These ID's map back to the second CD-HIT output file, the cluster (extension: .clstr) file.<br>
DOI: 10.6084/m9.figshare.7985645.v1
title: Oral microbiome gene catalog gene cluster file, 50% amino acid identity

description: Gene clusters for non-redundant microbial gene catalog (clustered at 50% sequence identity) from 1,473 oral microbiome shotgun metagenomic samples.<br>This is one of two raw output files from CD-HIT. Each cluster is marked in the left column with a "&gt;," and there is one cluster per consensus genes in the gene catalog files. The ID's in the right column are the genes within a cluster, with the consensus gene marked with an asterisk. Percent identity to the consensus gene is also described per gene ID.<br>
DOI: 10.6084/m9.figshare.7985594
title: references v1.0.1

description: The reference list associated with the trait and species Data Records.
DOI: 10.6084/m9.figshare.7985594.v1
title: references.csv

description: The reference list associated with the trait and species Data Records.
DOI: 10.6084/m9.figshare.7985456
title: What format of treatment do patients with emotional disorders prefer and why? Implications for public mental health settings and policies

description: The data file contains information on patient format preferences (individual, group, or online) for psychological treatment.
DOI: 10.6084/m9.figshare.7985195
title: When and where plant-soil feedback may promote plant coexistence: A meta-analysis; Supplementary Table 1. File containing raw data and citations for the meta-analysis

description: File containing data used in a meta-analysis of pairwise plant-soil feedback. The dataset includes citations for published papers from which data were collected, plant species identity, plant species origin (native/non-native), phylogenetic distance between species pairs, mycorrhizal status of the plant species, N-fixing status of the plant species, ecosystem the study took place in, absolute latitude of the study, mean annual precipitation of the study, type of inoculant used in the experiment, fraction of inoculum used in the experiment, testing environment (field/greenhouse), soil training environment (field/greenhouse), testing community (individual/population/community), performance of the plant species (generally biomass), calculated plant-soil feedback and variance used in the meta-analysis.
DOI: 10.6084/m9.figshare.7985174
title: Zachary's karate club

description: Zachary's karate club - a social network of a university karate club, described in the paper "An Information Flow Model for Conflict and Fission in Small Groups" by Wayne W. Zachary.
DOI: 10.6084/m9.figshare.7985456.v1
title: What format of treatment do patients with emotional disorders prefer and why? Implications for public mental health settings and policies

description: The data file contains information on patient format preferences (individual, group, or online) for psychological treatment.
DOI: 10.6084/m9.figshare.12874257.v1
title: Additional file of Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

description: Additional file of Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing
DOI: 10.6084/m9.figshare.12874230
title: Additional file 1 of Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

description: Additional file 1:Table S1. Contigs with high coverage aligning with zebra finch or chicken genes. an excel table listing great tit contigs with high sequencing coverage which align with zebra finch and/or chicken genes. Table S2. Unique GO terms associated with contigs expressed in only one tissue. an excel table listing the unique GO terms associated with contigs expressed only in one tissue. Table S3. Classification of unique GO terms into children of the three namespaces. an excel table listing the classification of all the GO terms uniquely associated with contigs expressed in one (or all) tissues into the 65 GO terms which are 'children' of the three namespaces (molecular function, biological process and cellular component). Table S4. Microsatellites detected in the great tit transcriptome. an excel table listing repeats detected in the great tit assembly. Repeats are listed along with at least 10 bases of flanking sequence on each side (up to a maximum of 200 bases of flanking sequence) (XLS 5 MB)
DOI: 10.6084/m9.figshare.12874230.v1
title: Additional file 1 of Characterisation of the transcriptome of a wild great tit Parus major population by next generation sequencing

description: Additional file 1:Table S1. Contigs with high coverage aligning with zebra finch or chicken genes. an excel table listing great tit contigs with high sequencing coverage which align with zebra finch and/or chicken genes. Table S2. Unique GO terms associated with contigs expressed in only one tissue. an excel table listing the unique GO terms associated with contigs expressed only in one tissue. Table S3. Classification of unique GO terms into children of the three namespaces. an excel table listing the classification of all the GO terms uniquely associated with contigs expressed in one (or all) tissues into the 65 GO terms which are 'children' of the three namespaces (molecular function, biological process and cellular component). Table S4. Microsatellites detected in the great tit transcriptome. an excel table listing repeats detected in the great tit assembly. Repeats are listed along with at least 10 bases of flanking sequence on each side (up to a maximum of 200 bases of flanking sequence) (XLS 5 MB)
DOI: 10.6084/m9.figshare.7982990
title: Whole Body Glucoregulation and Tissue-specific Glucose Uptake in a Novel Akt Substrate of 160 kDa Knockout Rat Model Untitled Item

description: raw data used to generate graphs and supplemental figures
DOI: 10.6084/m9.figshare.7982990.v1
title: Whole Body Glucoregulation and Tissue-specific Glucose Uptake in a Novel Akt Substrate of 160 kDa Knockout Rat Model Untitled Item

description: raw data used to generate graphs and supplemental figures
DOI: 10.6084/m9.figshare.12874269
title: Additional file 4 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 4:Summary of conserved microsyntenies identified by Blastn analysis with medaka (sheet 1), stickleback (sheet 2) and zebrafish (sheet 3). BAC, Forward and reverse hits indicate the orientation of the BES using the forward T7 and the reverse Sp6 sequencing primers, respectively. Span indicates the average distance between the two genes in the corresponding species. (XLS 196 KB)
DOI: 10.6084/m9.figshare.12874269.v1
title: Additional file 4 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 4:Summary of conserved microsyntenies identified by Blastn analysis with medaka (sheet 1), stickleback (sheet 2) and zebrafish (sheet 3). BAC, Forward and reverse hits indicate the orientation of the BES using the forward T7 and the reverse Sp6 sequencing primers, respectively. Span indicates the average distance between the two genes in the corresponding species. (XLS 196 KB)
DOI: 10.6084/m9.figshare.7982945
title: Table S2 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Full list of differentially abundant ASVs and taxonomy between hematophagous and non-hematophagous bats and birds, as determined by ANCOM The ShortID names are used in the manuscript in reference to the sequence provided under the header ‘ASV’. Host group(s) indicates the group(s) for which the given feature was considered differentially abundant. Mean abundances of the ASVs in hematophagous and non-hematophagous bats and birds are provided.
DOI: 10.6084/m9.figshare.12874272
title: Additional file 5 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 5:Summary of conserved microsyntenies identified by BlastX analysis with medaka (sheet 1), stickleback (sheet 2) and zebrafish (sheet 3) gene hits. Putative identities of mate paired genes were provided as ENSEMBL protein ID. Forward and reverse hits indicate the orientation of the BES using the forward T7 and the reverse Sp6 sequencing primers, respectively. Span indicates the average distance between the two genes in the corresponding species. (XLS 81 KB)
DOI: 10.6084/m9.figshare.12874272.v1
title: Additional file 5 of Analysis of BAC-end sequences in rainbow trout: Content characterization and assessment of synteny between trout and other fish genomes

description: Additional file 5:Summary of conserved microsyntenies identified by BlastX analysis with medaka (sheet 1), stickleback (sheet 2) and zebrafish (sheet 3) gene hits. Putative identities of mate paired genes were provided as ENSEMBL protein ID. Forward and reverse hits indicate the orientation of the BES using the forward T7 and the reverse Sp6 sequencing primers, respectively. Span indicates the average distance between the two genes in the corresponding species. (XLS 81 KB)
DOI: 10.6084/m9.figshare.7982945.v1
title: Table S2 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Full list of differentially abundant ASVs and taxonomy between hematophagous and non-hematophagous bats and birds, as determined by ANCOM The ShortID names are used in the manuscript in reference to the sequence provided under the header ‘ASV’. Host group(s) indicates the group(s) for which the given feature was considered differentially abundant. Mean abundances of the ASVs in hematophagous and non-hematophagous bats and birds are provided.
DOI: 10.6084/m9.figshare.7983062.v3
title: Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen

description: <b>Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen</b>
DOI: 10.6084/m9.figshare.7983062
title: Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen

description: <b>Attitudes and Practices of Community Pharmacists and Barriers to their Participation in Public Health Activities in Yemen</b>
DOI: 10.6084/m9.figshare.7982936
title: Table S1 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Sample information
DOI: 10.6084/m9.figshare.7982939
title: Table S3 from Is there convergence of gut microbes in blood-feeding vertebrates?

description: Full list of differentially abundant KOs and KEGG pathways with their functional descriptions between hematophagous and non-hematophagous bats and birds, as determined by ANCOM. Host group(s) indicates the group(s) for which the given feature was considered differentially abundant. Mean abundances of the KOs and pathways in hematophagous and non-hematophagous bats and birds are provided.