cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.14551098
title: Supplementary material - Oil interactions in world biomes.rar

description: We compiled 169 studies on the interactions between oil-offering flowers and floral visitors in world biomes, published until January 2021, and built a binary interaction matrix with 1460 links. The compiled database has 214 oil-offering flowers, distributed in 12 plant families, ten families recognized as oil flowers and two additional families (Gesneriaceae and Melastomataceae). Regarding floral visitors, 377 species were surveyed, bees were the most representative group (mainly oil-collecting bees).
DOI: 10.6084/m9.figshare.13143668.v1
title: Track Data

description: Datasets containing track data from fluorescent bead experiments.<br>Processing code are available here:https://github.com/LouisFaure/coral_paper<br><br>
DOI: 10.5281/zenodo.5071244
title: Predicting the crossmodal correspondences of odors using an electronic nose

description: Underlying perceptual and chemical data for the article "Predicting the crossmodal correspondences of odors using an electronic nose".
DOI: 10.5517/ccdc.csd.cc27dxvf
title: CCDC 2068005: Experimental Crystal Structure Determination

description: Related Article: Bin-Bin Yu, Yi-Wei Hua, Qi Huang, Si-Yuan Ye, Hao-Dong Zhang, Zheng Yan, Rui-Wen Li, Jun Wu, Yan Meng, Xuebo Cao|2021|CrystEngComm|23|4700|doi:10.1039/D1CE00350J
DOI: 10.5517/ccdc.csd.cc26zyjp
title: CCDC 2055533: Experimental Crystal Structure Determination

description: Related Article: Benjamin G. Harvey, Atta M. Arif, and Richard D. Ernst|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27g3nh
title: CCDC 2069146: Experimental Crystal Structure Determination

description: Related Article: Alfred K. K. Fung, Nicholas G. White|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27g3pj
title: CCDC 2069147: Experimental Crystal Structure Determination

description: Related Article: Alfred K. K. Fung, Nicholas G. White|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27g3qk
title: CCDC 2069148: Experimental Crystal Structure Determination

description: Related Article: Alfred K. K. Fung, Nicholas G. White|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27g7qp
title: CCDC 2069272: Experimental Crystal Structure Determination

description: Related Article: Tristan Schuh, Olga Kataeva, Hans-Joachim Knölker|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc27kv4t
title: CCDC 2072726: Experimental Crystal Structure Determination

description: Related Article: Teng Liu, Xianfu Shen, Xiang Shen, Chixian He, Jiaming Liu, Jian-Jun Liu|2021|CrystEngComm|23|4667|doi:10.1039/D1CE00545F
DOI: 10.5517/ccdc.csd.cc27lxvm
title: CCDC 2073771: Experimental Crystal Structure Determination

description: Related Article: Diana Visinescu, Maria-Gabriela Alexandru, Dan G. Dumitrescu, Sergiu Shova, Nicolás Moliner, Francesc Lloret, Miguel Julve|2021|CrystEngComm|23|4615|doi:10.1039/D1CE00626F
DOI: 10.5517/ccdc.csd.cc27lxwn
title: CCDC 2073772: Experimental Crystal Structure Determination

description: Related Article: Diana Visinescu, Maria-Gabriela Alexandru, Dan G. Dumitrescu, Sergiu Shova, Nicolás Moliner, Francesc Lloret, Miguel Julve|2021|CrystEngComm|23|4615|doi:10.1039/D1CE00626F
DOI: 10.5517/ccdc.csd.cc27lxxp
title: CCDC 2073773: Experimental Crystal Structure Determination

description: Related Article: Diana Visinescu, Maria-Gabriela Alexandru, Dan G. Dumitrescu, Sergiu Shova, Nicolás Moliner, Francesc Lloret, Miguel Julve|2021|CrystEngComm|23|4615|doi:10.1039/D1CE00626F
DOI: 10.5517/ccdc.csd.cc27lxyq
title: CCDC 2073774: Experimental Crystal Structure Determination

description: Related Article: Diana Visinescu, Maria-Gabriela Alexandru, Dan G. Dumitrescu, Sergiu Shova, Nicolás Moliner, Francesc Lloret, Miguel Julve|2021|CrystEngComm|23|4615|doi:10.1039/D1CE00626F
DOI: 10.5281/zenodo.5071174
title: Accurate annotation of protein coding sequences with IDTAXA - classification results

description: Raw classification results generated by IDTAXA, BLAST, and HMMER on a training set scraped from KEGG of &gt; 1.5M sequences. HMMER and BLAST results are also converted into IDTAXA like objects for ease of comparison.
DOI: 10.5281/zenodo.5071173
title: Accurate annotation of protein coding sequences with IDTAXA - classification results

description: Raw classification results generated by IDTAXA, BLAST, and HMMER on a training set scraped from KEGG of &gt; 1.5M sequences. HMMER and BLAST results are also converted into IDTAXA like objects for ease of comparison.
DOI: 10.15468/wp4gnk
title: Austrolebias paucisquama (Cyprinodontiformes: Rivulidae), a new species of annual killifish from southern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ferrer, Juliano, Malabarba, Luiz R., Costa, Wilson J. E. M. (2008): Austrolebias paucisquama (Cyprinodontiformes: Rivulidae), a new species of annual killifish from southern Brazil. Neotropical Ichthyology 6 (2): 175-180, DOI: 10.1590/S1679-62252008000200004, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252008000200004&lng=en&tlng=en
DOI: 10.15468/556hvt
title: A new genus and species of characid fish from the Amazon basin - the recognition of a relictual lineage of characid fishes (Ostariophysi: Cheirodontinae: Cheirodontini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Bührnheim, Cristina M., Carvalho, Tiago P., Malabarba, Luiz R., Weitzman, Stanley H. (2008): A new genus and species of characid fish from the Amazon basin - the recognition of a relictual lineage of characid fishes (Ostariophysi: Cheirodontinae: Cheirodontini). Neotropical Ichthyology 6 (4): 663-678, DOI: 10.1590/S1679-62252008000400016, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252008000400016&lng=en&tlng=en
DOI: 10.5281/zenodo.5071267
title: Phenopackets for case reports of structural variants

description: A collection of 188 published deleterious structural variants based on 182 cases published in 146 clinical case reports that describe individuals with Mendelian diseases.
DOI: 10.5281/zenodo.5071266
title: Phenopackets for case reports of structural variants

description: A collection of 188 published deleterious structural variants based on 182 cases published in 146 clinical case reports that describe individuals with Mendelian diseases.
DOI: 10.15468/4wt54m
title: A new species of Gymnogeophagus from the río Negro and río Tacuarí basins, Uruguay (Teleostei: Perciformes)

description: This dataset contains the digitized treatments in Plazi based on the original journal article González-Bergonzoni, Iván, Loureiro, Marcelo, Oviedo, Sebastián (2009): A new species of Gymnogeophagus from the río Negro and río Tacuarí basins, Uruguay (Teleostei: Perciformes). Neotropical Ichthyology 7 (1): 19-24, DOI: 10.1590/S1679-62252009000100003, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252009000100003&lng=en&tlng=en
DOI: 10.15468/mup4tv
title: Hemigrammus arua, a new species of characid (Characiformes: Characidae) from the lower Amazon, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lima, Flávio C. T., Wosiacki, Wolmar B., Ramos, Cristiane S. (2009): Hemigrammus arua, a new species of characid (Characiformes: Characidae) from the lower Amazon, Brazil. Neotropical Ichthyology 7 (2): 153-160, DOI: 10.1590/S1679-62252009000200004, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252009000200004&lng=en&tlng=en
DOI: 10.6084/m9.figshare.14912460
title: Supporting data

description: This file contains datasets regarding RT-qPCR assays and biofilm formation assays. related to methodologies and techniques described in the full associated article.
DOI: 10.6084/m9.figshare.14912460.v2
title: Supporting data

description: This file contains datasets regarding RT-qPCR assays and biofilm formation assays. related to methodologies and techniques described in the full associated article.
DOI: 10.6084/m9.figshare.14912460.v1
title: Supporting data

description: This file contains datasets regarding RT-qPCR assays and biofilm formation assays. related to methodologies and techniques described in the full associated article.
DOI: 10.15468/rk47nn
title: Two new species of Novantinoe (Disteniini, Disteniidae), two new species of Eurysthea (Elaphidiini, Cerambycinae, Cerambycidae), and new geographical records

description: This dataset contains the digitized treatments in Plazi based on the original journal article Botero, Juan Pablo, Heffern, Daniel, Santos-Silva, Antonio (2018): Two new species of Novantinoe (Disteniini, Disteniidae), two new species of Eurysthea (Elaphidiini, Cerambycinae, Cerambycidae), and new geographical records. Papéis Avulsos de Zoologia 58: 1-9, DOI: 10.11606/1807-0205/2018.58.59
DOI: 10.15468/3hksa9
title: A new species of Gymnotus (Gymnotiformes: Gymnotidae) from the Fitzcarrald Arch of southeastern Peru

description: This dataset contains the digitized treatments in Plazi based on the original journal article Maxime, Emmanuel L., Albert, James S. (2009): A new species of Gymnotus (Gymnotiformes: Gymnotidae) from the Fitzcarrald Arch of southeastern Peru. Neotropical Ichthyology 7 (4): 579-585, DOI: 10.1590/S1679-62252009000400004, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252009000400004&lng=en&tlng=en
DOI: 10.15468/4mt4n3
title: A new species of Xyliphius, a rarely sampled banjo catfish (Siluriformes: Aspredinidae) from the rio Tocantins-Araguaia system

description: This dataset contains the digitized treatments in Plazi based on the original journal article Figueiredo, Carlos A., Britto, Marcelo R. (2010): A new species of Xyliphius, a rarely sampled banjo catfish (Siluriformes: Aspredinidae) from the rio Tocantins-Araguaia system. Neotropical Ichthyology 8 (1): 105-112, DOI: 10.1590/S1679-62252010000100013, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252010000100013&lng=en&tlng=en
DOI: 10.15468/2jtfne
title: Redescription of Astyanax erythropterus (Holmberg, 1891) (Teleostei: Characiformes: Characidae) from La Plata basin in Argentina

description: This dataset contains the digitized treatments in Plazi based on the original journal article Soneira, Paula, Casciotta, Jorge, Almirón, Adriana, Ciotek, Liliana, Giorgis, Pablo (2010): Redescription of Astyanax erythropterus (Holmberg, 1891) (Teleostei: Characiformes: Characidae) from La Plata basin in Argentina. Neotropical Ichthyology 8 (4): 771, DOI: 10.1590/S1679-62252010005000009, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252010000400007&lng=en&tlng=en
DOI: 10.15468/4sb4g7
title: A new species of Tetragonopterus Cuvier, 1816 (Characiformes: Characidae: Tetragonopterinae) from the rio Jari, Amapá, northern Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Melo, Bruno F., Benine, Ricardo C., Mariguela, Tatiane C., Oliveira, Claudio (2011): A new species of Tetragonopterus Cuvier, 1816 (Characiformes: Characidae: Tetragonopterinae) from the rio Jari, Amapá, northern Brazil. Neotropical Ichthyology 9 (1): 49-56, DOI: 10.1590/S1679-62252011000100002, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252011000100002&lng=en&tlng=en
DOI: 10.5281/zenodo.5071265
title: Data from: Microbial effects on plant phenology and fitness

description: The enclosed files store the literature search results described in O'Brien<em> et al. </em>(2021) Microbial effects on plant phenology and fitness. <strong>American Journal of Botany </strong>(in press as of 5 July 2021) The preprint version of this article may be found at: https://ecoevorxiv.org/exadg/ <strong>search_results.tsv</strong> = Tab-delimited database of articles returned by Web of Science in response to the query described in the article. <strong>split_records.tsv</strong> = Tab-delimited database of microbial effects on plant phenology, manually curated by O'Brien <em>et al. </em>from the articles listed in search_results.tsv and from closely related articles. Many of the reviewed articles included multiple plant species, multiple treatments, or other experimental factors, and some measured multiple phenological traits. This file lists each experimental observation separately, broken down by plant life-history strategy, microbe type, treatment method, plant organ, and other relevant details.
description: The code used to analyze these data for the associated review paper can be found here: https://github.com/amob/MicrobesAndPhenology. NAG was supported by the National Science Foundation under Award No. IOS-2016351. MRG was supported by a Donnelly Environmental Postdoctoral Fellowship from the Yale Institute for Biospheric Studies. MRW was supported by the National Science Foundation under Award No. OIA‐1656006 and matching support from the State of Kansas through the Kansas Board of Regents. AMO was supported during the writing of this manuscript by University of Toronto funding to Dr. Megan E Frederickson and NSERC funding to Dr. David Sinton & Dr. Chelsea Rochman (NSERC STPGP 506882).
DOI: 10.5281/zenodo.5071264
title: Data from: Microbial effects on plant phenology and fitness

description: The enclosed files store the literature search results described in O'Brien<em> et al. </em>(2021) Microbial effects on plant phenology and fitness. <strong>American Journal of Botany </strong>(in press as of 5 July 2021) The preprint version of this article may be found at: https://ecoevorxiv.org/exadg/ <strong>search_results.tsv</strong> = Tab-delimited database of articles returned by Web of Science in response to the query described in the article. <strong>split_records.tsv</strong> = Tab-delimited database of microbial effects on plant phenology, manually curated by O'Brien <em>et al. </em>from the articles listed in search_results.tsv and from closely related articles. Many of the reviewed articles included multiple plant species, multiple treatments, or other experimental factors, and some measured multiple phenological traits. This file lists each experimental observation separately, broken down by plant life-history strategy, microbe type, treatment method, plant organ, and other relevant details.
description: The code used to analyze these data for the associated review paper can be found here: https://github.com/amob/MicrobesAndPhenology. NAG was supported by the National Science Foundation under Award No. IOS-2016351. MRG was supported by a Donnelly Environmental Postdoctoral Fellowship from the Yale Institute for Biospheric Studies. MRW was supported by the National Science Foundation under Award No. OIA‐1656006 and matching support from the State of Kansas through the Kansas Board of Regents. AMO was supported during the writing of this manuscript by University of Toronto funding to Dr. Megan E Frederickson and NSERC funding to Dr. David Sinton & Dr. Chelsea Rochman (NSERC STPGP 506882).
DOI: 10.6084/m9.figshare.11974509
title: Ilulissat Tracked Evaporation

description: Tracked evaporation for Ilulissat 1979-2014.
DOI: 10.6084/m9.figshare.11974509.v1
title: Ilulissat Tracked Evaporation

description: Tracked evaporation for Ilulissat 1979-2014.
DOI: 10.6084/m9.figshare.11974404
title: Thule Tracked Evaporation

description: Tracked evaporation data to Thule from 1979-2014.
DOI: 10.6084/m9.figshare.11974404.v1
title: Thule Tracked Evaporation

description: Tracked evaporation data to Thule from 1979-2014.
DOI: 10.15468/tjazms
title: Two new trans-Andean species of Imparfinis Eigenmann & Norris, 1900 (Siluriformes: Heptapteridae) from Colombia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ortega-Lara, Armando, Milani, Nadia, DoNascimiento, Carlos, Villa-Navarro, Francisco, Maldonado-Ocampo, Javier Alejandro (2011): Two new trans-Andean species of Imparfinis Eigenmann & Norris, 1900 (Siluriformes: Heptapteridae) from Colombia. Neotropical Ichthyology 9 (4): 777-793, DOI: 10.1590/S1679-62252011000400009
DOI: 10.15468/ewnm7e
title: A new species of Anchoviella Fowler, 1911 (Clupeiformes: Engraulidae) from the Amazon basin, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Loeb, Marina V. (2012): A new species of Anchoviella Fowler, 1911 (Clupeiformes: Engraulidae) from the Amazon basin, Brazil. Neotropical Ichthyology 10 (1): 13, DOI: 10.1590/S1679-62252012000100002, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252012000100002&lng=en&tlng=en
DOI: 10.6084/m9.figshare.14497767.v1
title: Double Difference Earthquake Catalogue

description: Double difference catalogue in vicinity of CM2 well, as shown in Figures 1c and 3cd of Hager et al., A process-based approach to understanding and managing triggered seismicity, Nature, 2021, DOI: 10.1038/s41586-021-03668-z<br>We thank Luigi Improta of INGV for providing the high precision Double Difference events catalogue<br>
DOI: 10.15468/4qruwv
title: A new species of Hypostomus Lacépède, 1803 (Siluriformes: Loricariidae) from the rio Tocantins-Araguaia basin, Brazil

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zawadzki, Cláudio Henrique, Oliveira, Renildo Ribeiro de, Debona, Tiago (2013): A new species of Hypostomus Lacépède, 1803 (Siluriformes: Loricariidae) from the rio Tocantins-Araguaia basin, Brazil. Neotropical Ichthyology 11 (1): 73-80, DOI: 10.1590/S1679-62252013000100008, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252013000100073&lng=en&tlng=en
DOI: 10.15468/32krf7
title: Centromochlus meridionalis, a new catfish species from the southern Amazonian limits, Mato Grosso State, Brazil (Siluriformes: Auchenipteridae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Sarmento-Soares, Luisa Maria, Cabeceira, Fernando G., Carvalho, Lucélia Nobre, Zuanon, Jansen, Akama, Alberto (2013): Centromochlus meridionalis, a new catfish species from the southern Amazonian limits, Mato Grosso State, Brazil (Siluriformes: Auchenipteridae). Neotropical Ichthyology 11 (4): 797-808, DOI: 10.1590/S1679-62252013000400007, URL: http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252013000400797&lng=en&tlng=en
DOI: 10.6084/m9.figshare.14912651.v1
title: Mineralogical auditing of the Volta Grande Mine (SE Brazil) Sn-Ta-Nb-Li processing plant, aiming at REE recovery as by-products

description: Recovering rare earth elements (REE) as by-products of existing mineral operations is a low-investment option to increase supply in short terms. REE-minerals were reported for the São João del Rei Pegmatitic Province (southern Minas Gerais State, Brazil) since the late 1940s, but data is scarce and dubious. The largest pegmatites project in the Province – Volta Grande mine – has been mined since 1945, producing concentrates of cassiterite, columbite-subgroup minerals, and microlite, and since 2018 spodumene is also recovered. Here we prepare a stream-specific mineralogical characterisation of the beneficiation plants to identify REE-minerals for potential REE recovery. The results analyse the feasibility of reprocessing some streams to generate a high-apatite product adequate for phosphoric acid production with REE recovery as by-products. The further REE speciation also revealed the preferential distribution of heavy-REE into columbite-subgroup minerals and light-REE into microlite, which may represent promising targets for the production of concentrates with high-purity.
DOI: 10.6084/m9.figshare.14912651
title: Mineralogical auditing of the Volta Grande Mine (SE Brazil) Sn-Ta-Nb-Li processing plant, aiming at REE recovery as by-products

description: Recovering rare earth elements (REE) as by-products of existing mineral operations is a low-investment option to increase supply in short terms. REE-minerals were reported for the São João del Rei Pegmatitic Province (southern Minas Gerais State, Brazil) since the late 1940s, but data is scarce and dubious. The largest pegmatites project in the Province – Volta Grande mine – has been mined since 1945, producing concentrates of cassiterite, columbite-subgroup minerals, and microlite, and since 2018 spodumene is also recovered. Here we prepare a stream-specific mineralogical characterisation of the beneficiation plants to identify REE-minerals for potential REE recovery. The results analyse the feasibility of reprocessing some streams to generate a high-apatite product adequate for phosphoric acid production with REE recovery as by-products. The further REE speciation also revealed the preferential distribution of heavy-REE into columbite-subgroup minerals and light-REE into microlite, which may represent promising targets for the production of concentrates with high-purity.
DOI: 10.5281/zenodo.5031252
title: Are Enantiomer of Chemical Probes Good Negative Control?

description: Chemical probes are drug-like compounds that bind potently and selectively to a protein target. When there is a chiral center in the compound, a common practice is to purify and test both enantiomers. Sometimes (often) enantiomer A is active and B is inactive or far less potent. When this is the case, enantiomer A is declared the chemical probe, while enantiomer B is used as a negative control . But if enantiomer A is active against unknown off-targets, enantiomer B may be inactive against these off-targets, which would be a serious problem. The project is to systematically evaluate how often enantiomer B is inactive against protein X if enantiomer A is active against the same target.
DOI: 10.5281/zenodo.5031251
title: Are Enantiomer of Chemical Probes Good Negative Control?

description: Chemical probes are drug-like compounds that bind potently and selectively to a protein target. When there is a chiral center in the compound, a common practice is to purify and test both enantiomers. Sometimes (often) enantiomer A is active and B is inactive or far less potent. When this is the case, enantiomer A is declared the chemical probe, while enantiomer B is used as a negative control . But if enantiomer A is active against unknown off-targets, enantiomer B may be inactive against these off-targets, which would be a serious problem. The project is to systematically evaluate how often enantiomer B is inactive against protein X if enantiomer A is active against the same target.
DOI: 10.5281/zenodo.4900586
title: Differential Expression of CD44 Variants in Normal and AD Brain

description: In brief, we confirmed the specificity of commercially available CD44 antibodies by immunoblotting transfected cell samples overexpressing specific CD44 variants. We then applied the validated antibodies to examine the distribution of CD44 variant expression levels in normal and AD brain tissues using immunohistochemistry. The experimental conditions and results of this study are summarized in <strong>Table 1</strong>.
description: This work was supported by the Emory Center for Neurodegenerative Disease Neuropathology and Viral Vector Cores, Emory Integrated Genomics Core, and the NIH National Institutes on Aging TREAT-AD Center for Alzheimer's Disease grant U54AG065187.
DOI: 10.5281/zenodo.4900585
title: Differential Expression of CD44 Variants in Normal and AD Brain

description: In brief, we confirmed the specificity of commercially available CD44 antibodies by immunoblotting transfected cell samples overexpressing specific CD44 variants. We then applied the validated antibodies to examine the distribution of CD44 variant expression levels in normal and AD brain tissues using immunohistochemistry. The experimental conditions and results of this study are summarized in <strong>Table 1</strong>.
description: This work was supported by the Emory Center for Neurodegenerative Disease Neuropathology and Viral Vector Cores, Emory Integrated Genomics Core, and the NIH National Institutes on Aging TREAT-AD Center for Alzheimer's Disease grant U54AG065187.