cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1c59zw3v8
title: Eight generations of native seed cultivation reduces plant fitness relative to the wild progenitor population

description: Native seed for restoration is in high demand, but widespread habitat
 degradation will likely prevent enough seed from being sustainably
 harvested from wild populations to meet this need. While propagation of
 native species has emerged in recent decades to address this resource gap,
 few studies have tested whether the processes of sampling from wild
 populations, followed by generations of farm cultivation, reduces plant
 fitness tolerance to stress over time. To test this, we grew the eighth
 generation of farm-propagated Clarkia pulchella Pursh (Onagraceae)
 alongside seeds from two of the three original wild source populations
 that established the native seed farm. To detect differences in stress
 tolerance, half of the plants were subjected to a low-water treatment in
 the greenhouse. At the outset, farmed seeds were 4.1% heavier and had 4%
 greater germination compared to wild-collected seed. At maturity, farmed
 plants were 22% taller and had 20% larger stigmatic surfaces, even after
 accounting for differences in initial seed size. Importantly, the
 mortality of farmed plants was extremely high (75%), especially in the
 low-water treatment (80%). Moreover, farmed plants under the high-water
 treatment had 90% lower relative fitness than wild plants due to the 1.3
 times greater weekly mortality and a 3-fold reduction in flowering
 likelihood. Together, these data suggest that bottlenecks during initial
 sampling and/or unconscious selection during propagation severely reduced
 genetic diversity and promoted inbreeding. This may undermine restoration
 success, especially under stressful conditions. These results indicate
 that more data must be collected on the effects of cultivation to
 determine whether it is a suitable source of restoration seed.
description: Data were collected on 1500 wild and farmed (750 from each seed
 source) <em>Clarkia pulchella</em> plants grown in the
 greenhouse at the University of Minnesota Duluth. All data were analyzed
 in JMP except Aster.csv, which was analysed in R using the statistical
 package "aster".
description: See readme file for details on each of the files.
DOI: 10.5061/dryad.1zcrjdfrm
title: Chondrichthyan specimen data from the Florida fossil record

description: As of September 2019, the Florida Museum of Natural History (FLMNH) had a
 curated collection of 117,449 chondrichthyan specimens from Florida,
 spanning the Eocene through the Pleistocene. Herein, I evaluated the
 completeness of the chondrichthyan fossil record from Florida based on the
 FLMNH collection, while analyzing patterns in taxonomic and
 ecomorphological diversity. At least 70 chondrichthyan taxa were
 recognized, representing 10 orders, 26 families, and 42 genera; of which,
 20 taxa represent first occurrences from Florida. A sample of 107,698
 specimens was organized into 12 time bins to analyze taxonomic and
 ecomorphological diversity, with an expectation that diversity patterns
 would correspond with global climate events (e.g., the Eocene-Oligocene
 Transition and the Middle Miocene Climatic Optimum). However, diversity
 patterns were obscured by pervasive sampling bias, attributable to
 variable collection methods, research prioritizations, and regional
 lithologic controls. Sampling is particularly poor for smaller specimens
 and older geologic units (e.g., the Paleogene). Despite incomplete
 sampling of the Florida chondrichthyan fossil record, there was an
 apparent turnover along the Atlantic and Gulf coastal plains from a
 lamniform to carcharhiniform dominated chondrichthyan fauna that occurred
 during the Eocene. This turnover corresponded with the extinction of many
 lamniform taxa with grasping-dominated dentition types (e.g.,
 Brachycarcharias, Jaekelotodus, and Macrorhizodus). Selachian taxa that
 survived the late Eocene extinctions were predominantly represented by
 cutting-dominant dentition types. Since cutting aids in the dismemberment
 of prey, this may reflect a macroevolutionary trend towards active
 predation and scavenging on larger prey, such as marine mammals, teleost
 fish, and other sharks.
description: This file contains specimen records for all fossil
 chondrichthyans conserved at the Florida Museum, as of September
 2019.  Note: blank cells represent a lack of relevant
 information for those particular specimens. Please see the README file for
 additional information about this dataset.
DOI: 10.5061/dryad.prr4xgxm0
title: Dataset of habitat quality does not predict animal population abundance on frequently disturbed landscapes

description: The data presented here are related to the research article entitled
 “Habitat quality does not predict animal population abundance on
 frequently disturbed landscapes”. Using an individual-based model, we
 simulated movement of theoretical individuals in a dynamically disturbed
 landscape and quantified the error of predicting population spatial
 relative abundance using an habitat model. This dataset provides the Earth
 Mover's Distance (EMD) as prediction error measure obtained in
 simulations with varying individual step length and disturbance frequency.
description: This dataset is the results of spatially-explicit simulations. It
 provides the difference (as calculated using the Earth mover's
 distance) between the animal relative abundance obtained after simulated
 movement and the one estimated using a habitat model depending on 1) the
 cumulative number of cells affected by a disturbance over time and space
 and 2) the average and standard deviation of the realized animal step
 length over time, number of individuals, and number of
 simulations. Simulations and data processing are
 described in Kunegel-Lion <em>et al.</em>, 2022,
 <em>Ecological Modelling</em> (https://doi.org/10.1016/j.dib.2020.105293)
DOI: 10.5061/dryad.tb2rbp00n
title: Mitochondrial and ER membrane protein trafficking CRISPR screens

description: The trafficking of specific protein cohorts to the correct subcellular
 location at the correct time is essential for every signaling and
 regulatory process in biology. Gene perturbation screens could provide a
 powerful approach to probe the molecular mechanisms of protein
 trafficking, but only if protein localization or mislocalization can be
 tied to a simple and robust phenotype for cell selection, such as cell
 proliferation or FACS. To broadly empower the study of protein trafficking
 processes with gene perturbation, we developed a genetically-encoded
 molecular tool named HiLITR. HiLITR converts protein colocalization into
 proteolytic release of a membrane-anchored transcription factor, which
 drives the expression of a chosen reporter gene. Using HiLITR in
 combination with FACS-based CRISPRi screening in human cell lines, we
 identify genes that influence the trafficking of mitochondrial and ER
 tail-anchored proteins. We show that loss of the SUMO E1 component SAE1
 results in the mislocalization and destabilization of mitochondrial
 tail-anchored proteins. We also demonstrate a distinct regulatory role for
 EMC10 in the ER membrane complex, opposing the transmembrane-domain
 insertion activity of the complex. Through transcriptional integration of
 complex cellular functions, HiLITR expands the scope of biological
 processes that can be studied by genetic perturbation screening
 technologies.
description: This dataset contains FASTQ files from several HiLITR CRISPR
 screens. K562 cell lines stably expressing various HiLITR configurations
 were transduced with lentiviral CRISPRi sgRNA libraries (either
 genome-wide, and/or "batch" libraries) at a low multiplicity of
 infection such that each cell received one sgRNA on average. After 48
 hours, cells with successful lentiviral sgRNA integration events were
 selected for using Puromycin over the next 96 hours. In general, cells
 were induced with doxycycyline to induce expression of the HiLITR TEV
 protease 16-24 hours prior to light stimulation (some differences in light
 induction timing exist depending on the cell line). After an incubation
 period of 8-16 hours to allow HiLITR reporter expression to occur, cells
 were sorted by FACS into bins based on levels of HiLITR reporter
 expression. The genomic DNA was extracted from the sorted populations, and
 the integrated sgRNAs in each population were amplified, barcoded, and
 sequenced on an Illumina NextSeq instrument at various read depths (but
 always greater than or equal to 300X sequencing coverage for each sgRNA in
 the lentiviral sgRNA library transduced into a given cell line).
 Experiments were performed in technical replicates. The sequencing .bcl
 files were converted to FASTQ files using the Illumina bcl2fastq
 conversion software
description: C25 FASTQ files belong to the ER batch CRISPR screen. M2C9 FASTQ
 files belong to the TA screen. M13C2 FASTQ files belong to the SA screen.
 TR refers to technical replicates, of which there are 2 for each
 experiment.
DOI: 10.15468/dl.9m38zp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Winteria telescopa Brauer, 1901",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((11.7957 -6.2886,12.3365 -7.1504,17.9648 -7.1504,17.9648 1.8496,9.1702 1.8496,8.9648 1.4824,8.9648 -2.2147,9.212 -2.6876,11.2887 -4.7775,11.6694 -5.4096,11.7957 -6.2886))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009987-250525065834625/datasets/export for details.
DOI: 10.15468/dl.tytme8
title: Occurrence Download

description: A dataset containing 258519 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (CHN.11_1, CHN.17_1, CHN.19_1, CHN.18_1)",
 "Year 2000-2025"
 ]
}

 The dataset includes 258519 records from 263 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001604-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89w53c
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 10.8496,35.9648 10.8496,35.9648 1.8496,44.9648 1.8496,44.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011120-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bckw22
title: Occurrence Download

description: A dataset containing 36694 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Celastrus orbiculatus Thunb.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 36694 records from 281 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011121-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.385stc
title: Occurrence Download

description: A dataset containing 32831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Bromus erectus Huds.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 32831 records from 169 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011123-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q5g27q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9096 1.1987,44.9648 1.2321,44.9648 1.8496,35.9648 1.8496,35.9648 -7.1504,40.3029 -7.1504,40.4263 -6.8134,40.0733 -6.4249,39.9535 -5.9102,40.3587 -5.2718,40.3515 -4.7573,40.0702 -4.4392,40.3811 -3.7186,40.7402 -3.0348,41.8195 -2.1723,43.8399 0.2902,44.9096 1.1987))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011124-250525065834625/datasets/export for details.
DOI: 10.15468/dl.6ajp6s
title: Occurrence Download

description: A dataset containing 14330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Fraxinus americana L."
 ]
}

 The dataset includes 14330 records from 262 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011125-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u2vmqm
title: Occurrence Download

description: A dataset containing 7618 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Cenchrus echinatus L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 7618 records from 361 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011126-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kvnzfa
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Opisthoproctus Vaillant, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((36.2225 24.1647,35.9648 24.4806,35.9648 19.8496,37.7519 19.8496,37.7005 20.2556,37.7935 21.209,37.3891 21.7756,37.3588 22.2459,36.8499 22.7968,36.6611 23.2461,36.1736 23.4033,36.31 23.7463,36.2225 24.1647))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011127-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15559732
title: INGLIZ TILINI O'QITISHDA ZAMONAVIY O'QITISH METODLARI
DOI: 10.5281/zenodo.15559733
title: INGLIZ TILINI O'QITISHDA ZAMONAVIY O'QITISH METODLARI
DOI: 10.15468/dl.s6embg
title: Occurrence Download

description: A dataset containing 128547 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Salix purpurea L."
 ]
}

 The dataset includes 128547 records from 983 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0011112-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4nfqm
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 "Geometry MULTIPOLYGON(((-75.88756 4.90163,-75.88846 4.89759,-75.88806 4.89691,-75.88664 4.89726,-75.88608 4.89943,-75.88485 4.90164,-75.88684 4.90256,-75.88756 4.90163)))"
 ]
}

 The dataset's 1 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009833-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29109662
title: Interview Leo.docx

description: In-depth interview transcription
DOI: 10.15468/dl.a7jjae
title: Occurrence Download

description: A dataset containing 188566 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((33.18264 -10.67257, 36.06141 -10.67257, 36.06141 -7.427288, 33.18264 -7.427288, 33.18264 -10.67257))"
 ]
}

 The dataset includes 188566 records from 367 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009819-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xb2p27
title: Occurrence Download

description: A dataset containing 423763 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Rwanda"
 ]
}

 The dataset includes 423763 records from 458 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049538-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er4rdh
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lonicera tatarica",
 "Country is Armenia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049567-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5chjz5
title: Occurrence Download

description: A dataset containing 5158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Sula nebouxii"
 ]
}

 The dataset includes 5158 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033878-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z893p7
title: Occurrence Download

description: A dataset containing 2301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Setonix brachyurus"
 ]
}

 The dataset includes 2301 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033879-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgnvy6
title: Occurrence Download

description: A dataset containing 8365 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA",
 "TaxonKey is Myotis lucifugus"
 ]
}

 The dataset includes 8365 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033881-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruqxe6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cottus asper",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033882-251025141854904/datasets/export for details.
DOI: 10.15468/dl.vtxry2
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cottus bairdii",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033883-251025141854904/datasets/export for details.
DOI: 10.5281/zenodo.17612471
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251114t Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251114t Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.17612470
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS251114t Preliminary

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS251114t Preliminary. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.25345/c5rf5kv2x
title: MassIVE MSV000099908 - ACSS2 mediates prenatal alcohol exposure-related morphological and behavioral phenotypes
title: As part of a larger study investigating how the metabolic enzyme ACSS2 contributes to PAE phenotypes, we also performed LC-MS/MS on fetal and adolescent PAE mouse brain histone extractions. Deposited here are the RAW files from acutely exposed fetal brains at timepoints E10.5, E11.5, and E17.5, as well as chronically prenatally exposed adolescent WT and ACSS2KO brains.
DOI: 10.34740/kaggle/dsv/13735755
title: Balochi Language to English Translation Dataset
DOI: 10.15468/dl.euuawe
title: Occurrence Download

description: A dataset containing 4196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Viola nuttallii"
 ]
}

 The dataset includes 4196 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033884-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.f6vk5g
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cottus extensus",
 "HasCoordinate is true",
 "Geometry POLYGON((-78 12, -73 12, -73 0, -78 0, -78 12))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033885-251025141854904/datasets/export for details.
DOI: 10.15468/dl.pkasg6
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "Geometry POLYGON((-6.66256 43.16613,-6.59032 43.16613,-6.59032 43.23308,-6.66256 43.23308,-6.66256 43.16613))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year 2020-2025"
 ]
}

 The dataset includes 137 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033887-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.