cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25386/genetics.7294937.v1
title: Supplemental Material for Chang and Larracuente, 2018

description: File S1 contains methods and configuration files for
assembling and reconciling genomes and our calculation for estimating Y-linked
gene conversion rate.

 

Figure S1 shows our assembly pipeline with command lines and
pointers to code and configuration files in the supplement and/or github. 

 

Figure S2 has the MUMMER plots showing whole genome
alignments between the R6 assembly and our new assembly for autosomes and X
chromosome. 

 

Figure S3 has the MUMMER plots showing the alignment between
R6 Y chromosome assembly and our new Y chromosome assembly. 

 

Figure S4 shows the median female-to-male coverage ratio of
Illumina reads across different chromosomes based on the R6 annotation

 

Figure S5 shows the coverage of Pacbio reads for each
Y-linked 10-kb window in our assembly and R6.

 

Figure S6 shows the coverage of Pacbio reads in first 700 kb
of Y_scaffold4, which contains <i>pp1-</i><i>y1</i> and <i>Ary</i>.

 

Figure S7 shows repeat composition in heterochromatic
regions. 

 

Table S1 details the order that we reconciled genomes.

 

Table S2 lists the accession numbers for sequence data that
we used in the study.

 

Table S3 contains the sequences and PCR condition for our
primers.

 

Table S4 has the raw data from Figure S1, showing the median
PacBio read coverage for every region of genome in 10 kb windows.

 

Table S5 shows the gaps we closed in the <i>Drosophila melanogaster</i> R6 assembly.

 

Table S6 lists the intron sizes of Y-linked genes in our
assembly.

 

Table S7 lists the duplicated exons of Y-linked genes and
their coordinates in our assembly.

 

Table S8 lists the expression level and annotation of every
gene based on whole male and testes RNA-seq data.

 

Table S9 lists transposon and complex repeat composition for
every contig/scaffold in our assembly.

 

Table S10 lists simple repeat composition for every
contig/scaffold in the assembly.
DOI: 10.6084/m9.figshare.3560562.v1
title: Appendix A. Map of study plot, photo of experimental cage, table of parameter estimates, and density dependence regression.

description: Map of study plot, photo of experimental cage, table of parameter estimates, and density dependence regression.
DOI: 10.6084/m9.figshare.6292142.v1
title: Yelp 2013

description: This dataset is a subset of the Yelp Challenge, it contains all the reviews in the year of 2013
DOI: 10.17632/7m9pcg7xhf
title: Dataset of customer focus research

description: Dataset of customer focus research
DOI: 10.17632/hkctg6st34
title: Baseline Dataset on Bacterial Counts, Morphotypes and Gram Staining from Urban Wastewater Treatment Plants of Gujarat, Western India

description: This dataset contains culture-based enumeration and phenotypic characterization of bacteria isolated from five municipal sewage treatment plants (STPs) in Gujarat, western India—two located in Vadodara District and three in Anand District. Water samples were collected from three major treatment stages at each STP: (i) Influent (raw incoming sewage), (ii) Aeration tank (biological treatment zone), and (iii) Final effluent (post-chlorination discharge point). The primary goal was to analyze variations in bacterial load and morphology throughout the treatment process, with a specific focus on the impact of chlorination. Sterile 50 mL centrifuge tubes were autoclaved and used for sampling. Samples were immediately transported to the laboratory in ice-packed containers to maintain bacterial viability. Serial dilutions up to 10⁻⁸ were prepared using 0.8% saline and 100 µL from each dilution was plated on nutrient agar using the spread plate method. After 24 hours of incubation at 37°C, colony-forming units per milliliter (CFU/mL) were calculated for each sample. Isolated colonies were further sub-cultured and studied for colony morphology (color, size, margin, elevation, and surface characteristics) and Gram reaction via standard Gram staining procedures. This dataset includes: CFU/mL data for each treatment stage across all five STPs; Morphological traits for each distinct bacterial colony type; Gram reaction results (positive/negative); Graphical representation of bacterial reduction across treatment stages; Comparative analysis between STPs of Vadodara and Anand Districts; and Correlation plots showing relationships between treatment efficiency and bacterial type distribution. This dataset provides important baseline information about microbial diversity, abundance, and disinfection response in domestic sewage environments. It is highly relevant for researchers working on environmental microbiology, wastewater treatment, water quality assessment, and antimicrobial resistance (AMR) tracking. These data may also assist in selecting target organisms for genomic or transcriptomic studies in future investigations focused on AMR development due to disinfection stress. The data are presented in structured spreadsheets with accompanying legends and metadata files. Files are organized by District and STP with all associated morphological and Gram-staining observations. Visuals such as bar plots and correlation heatmaps are included in PNG format. This resource can serve as a baseline for future comparative studies and aid in decision-making related to wastewater treatment upgrades or AMR mitigation efforts in STPs at global scale.
DOI: 10.17632/jhwd3dtwmd
title: OCR_cable_bacteria

description: This dataset contains the raw images used for calculation of the individual and per-cell oxygen consumption rates of the paper 'Oxygen Consumption of Individual Cable Bacteria'. Each folder represents a distortion, and contains figures in .TIFF format of the 10x and 40x magnification. Additionally, video time series of the oxic-anoxic interface recorded in the trench slide set-up are provided (S6 and S7).
DOI: 10.6084/m9.figshare.14185730.v1
title: Vaccine hesitancy tweets codebook

description: This is the content analysis codebook for the paper, "Covid-19 Vaccine Hesitancy on English-Language Twitter"The tweets and classifications are not included for privacy reasons.
DOI: 10.6084/m9.figshare.19229889.v2
title: Supplementary_Table_7_Classification_analysis.xlsx

description: Supplementary Table 7. A. Results of the Weka classification analysis using all features identified by DIABLO or only the subset contributing more to the classification. The analysis was performed considering the healthy control of this study or the healthy omnivorous subjects from Tarallo et al., 2021 (Healthy2). B. The list of features contributing more in classifying the different study groups.
DOI: 10.15468/dl.xt62nq
title: Occurrence Download

description: A dataset containing 24917 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Aegilops geniculata"
 ]
}

 The dataset includes 24917 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025781-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7cgfqm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fumaria muralis",
 "Country is Sao Tome and Principe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025783-250811113504898/datasets/export for details.
DOI: 10.15468/dl.yg79ee
title: Occurrence Download

description: A dataset containing 823 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Fumaria muralis",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 823 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025784-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/sc4i8m
title: Executive Agreements Database, Statement Regarding Agreement Between The United States and The Russian Federation Amending The Agreement Of July 30, 1992, As Amended, Concerning the Safe, Secure and Ecologically Sound Destruction Of Chemical Weapons. Signed At Washington and Moscow September 28 and October 6, 2005. Entered Into Force October 6, 2005.

description: KAV 7431

First signed 09/28/2005
Last signed 10/06/2005
Entry into force (supplemented by last signed) 10/06/2005

stamped 05-285

C06562132

cover memo
DOI: 10.7910/dvn/xeslrz
title: PROMIS 2 Sleep Wake

description: Data from the PROMIS Sleep-Wake supplement study
DOI: 10.7910/dvn/yf4id
title: House Unpassed Legislation 1843, Docket 1230A, SC1/series 230, Petition of Hosea Trumbull

description: &lt;p&gt;Petition subject: Against railroad discrimination with focus on white passengers &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:11029516"&gt;http://nrs.harvard.edu/urn-3:FHCL:11029516&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Upton &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: William Legg, Upton; committee on that subject; committee on the petitions of Francis Jackson and others &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;Hosea Trumbull&lt;/li&gt;&lt;li&gt;Samuel Johnson&lt;/li&gt;&lt;li&gt;William D. Trumbull&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1843-01-17,1843-01-19 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on January 17, 1843 and referred to the committee on the petitions of Francis Jackson and others and sent for concurrence and received in the Senate on January 19, 1843 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 138 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 46 &lt;/p&gt; &lt;p&gt;Female signatures: 74 &lt;/p&gt; &lt;p&gt;Other male signatures: 5 &lt;/p&gt; &lt;p&gt;Unidentified signatures: 13 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: citizens, voters, [females], [minors], ["others"], ["legal voters"] &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Printed &lt;/p&gt; &lt;p&gt;Signatory column format: column separated &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: no additional documents &lt;/p&gt; &lt;p&gt;Additional archivist notes: Separated into "citizens" and "voters," pasted with another petition &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: House Unpassed 1843, Docket 1230A &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/zgi2gf
title: Expressive Voting in Autocracies: A Theory of Non-Economic Participation with Evidence from Cameroon

description: Replication files for "Expressive Voting in Autocracies: A Theory of Non-Economic Participation with Evidence from Cameroon"
DOI: 10.6084/m9.figshare.29223926.v1
title: Cell pore construction method

description: Inspired by the superior lateral mechanical properties of the reed stem in nature, the microstructure of pores on the transverse and longitudinal interfaces of reed stem is studied for the first time. A new design method for the microscopic characteristics of reed is proposed. Based on the microscopic characteristics, a novel reed-inspired honeycomb with high lateral energy absorption performance is invented. Through simulation and experimental research methods, the lateral energy absorption performance of the reed-inspired honeycomb is studied, and the reason for its high lateral energy absorption performance is discussed. Finally, the potential application of the reed-inspired honeycomb in various fields of collision, explosion and impact is investigated.
DOI: 10.7910/dvn/8vav5g
title: Replication Data for: Do Long Constitutions Really Hamper Economic Performance? A Comment on Tsebelis and Nardi (2016a)

description: Data and script to replicate the results from the main paper and the appendix
DOI: 10.7910/dvn/jkattq
title: Ground-based observations of 337 nm and 777 nm optical emissions produced by lightning

description: This repository contains data for paper: Ground-based observations of 337 nm and 777 nm optical emissions produced by lightning". Submitted at JGR-Atmospheres.
DOI: 10.7910/dvn/yhkwmr
title: Replication Data for: Deep learning and taphonomy: high accuracy in the classification of cut marks made on fleshed and defleshed bones using convolutional neural networks

description: This Dataset contains all the images used for the three different experiments referenced in this paper, aswell as the code used to run the AI algorithms.
In all three cases, images are labeled in order to classify them in one of the groups that are the matter of the present study, that is, cut marks done with or without meat.
For that matter, images labeled as NM refer to cut marks done without any meat (No-Meat); and images labeled as WM refer to cut marks done during butchery (With-Meat).
The type of cut mark of each experiment are referred in the paper.
The code is presented in .ipynb format, accesible throught JupiterNotebook app. The code is also presented as used in the experiments.
DOI: 10.7910/dvn/ilxjom
title: Schmidt & Nosek (2010): Implicit (and explicit) racial attitudes barely changed during Barack Obama’s presidential campaign and early presidency

description: As a high-status, omnipresent Black exemplar, Barack Obama and his rise to the presidency of the United States may have induced a cultural shift in implicit racial attitudes, much like controlled exposures to positive Black and negative White exemplars have done in the laboratory (Dasgupta
& Greenwald, 2001). With a very large, heterogeneous sample collected daily for 2.5 years prior to, during and after the 2008 Election season (N = 479,405), we observed very little evidence of systematic change in implicit and explicit racial attitudes overall, within subgroups, or for particular notable dates. Malleability of racial attitudes – implicit or explicit – may be conditional on more features than the mere presence of high-status counter-stereotypic exemplars.
DOI: 10.7910/dvn/m2gv9m
title: Radiation-Induced Lung Toxicity in Mice Irradiated in a Strong Magnetic Field - Mouse 45

description: Mouse 45: Irradiated 05/18/2016 Pre Scan: 05/17/2016 Post Scan: 10/04/2016
DOI: 10.7910/dvn/on9p44
title: 3D simulation of H-mode plasmas with localized divertor impurity injection on Alcator C-Mod using the edge transport code EMC3-EIRENE

description: Experiments in Alcator C-Mod to assess the level of toroidal asymmetry in divertor conditions resulting from poloidally and toroidally localized extrinsic impurity gas seeding show a weak toroidal peaking (~1.1) in divertor electron temperatures for high-power Enhanced D-alpha H-mode plasmas. This is in contrast to similar experiments in Ohmically heated L-mode plasmas, which showed a clear toroidal modulation in the divertor electron temperature. Modeling of these experiments using the 3D edge transport code EMC3-EIRENE [Y. Feng, et al., J. Nucl. Mater., 241 (1997) 930] qualitatively reproduces these trends, and indicates that the different response in the simulations is due to the ionization location of the injected nitrogen. Low electron temperatures in the private flux region (PFR) in L-mode
description: PSFC REPORT PSFC/JA-15-85<br><br>This work is supported by D.O.E. contracts DE-AC05-00OR22725 and DE-FC02-99ER54512. The views and opinions expressed herein do not necessarily reflect those of the ITER Organization.
DOI: 10.7910/dvn/onwno7
title: Bad Avacado: An open dataset of bad Avocado images to enable successful automated recognition and sorting based on produce visual characteristics.

description: Bad Avacado: An open dataset of bad Avocado images to enable successful automated recognition and sorting based on produce visual characteristics.
DOI: 10.7910/dvn/rp9knu
title: Data Clustered By Library Type for The Impact of COVID-19 on Technical Services Units Survey Results

description: These datasets, clustered by library type, contain cleaned data survey results from the October 2021-January 2022 survey titled "The Impact of COVID-19 on Technical Services Units". This data was gathered from a Qualtrics survey, which was anonymized to prevent Qualtrics from gathering identifiable information from respondents. 

These specific iterations of data reflect the cleaning and standardization conducted on the raw dataset retrieved from survey responses, and then cluster the data into specific library type files. All files reflect the removal of data auto-generated by Qualtrics (such as survey start/stop times), blank rows, survey responses not completed after question four (the first section of survey questions), and non-United States responses. 

Survey respondents were asked to identify their library type (Academic, Public, K-12 School, Special Collections and/or Archives, Other, and Blank responses). There is some duplication between files, as respondents were allowed to select more than one library type to represent the sometimes complicated governing structure within libraries. 

Note that these files also contain an additional cleaning steps to standardize numbers within the "How many full and part-time staff members (not student workers) were on your Technical Services team prior to the COVID-19 pandemic?" and "How many full and part-time staff members (not student workers) are on your technical services team now?" questions (Q6 and Q7). String text was removed from these fields, as well as incomplete responses (e.g. Indicating a before number but not an after number).
DOI: 10.7910/dvn/xloryp
title: A92_4679.jpg

description: Link to OCHRE database: &lt;a href = 'http://pi.lib.uchicago.edu/1001/org/ochre/9476fe08-ca62-0fe3-3a46-09909f981c73'&gt;http://pi.lib.uchicago.edu/1001/org/ochre/9476fe08-ca62-0fe3-3a46-09909f981c73
DOI: 10.7910/dvn/ygt1kx
title: Replication Data for: Primary Barriers to Working Class Representation

description: Data and code to replicate analyses.
DOI: 10.7910/dvn/zfybzo
title: Wright Files I-Z Edited; Docketed Case: 73-2227
DOI: 10.7910/dvn/zhwcqv
title: Senate Unpassed Legislation 1873, H 297 rejected, SC1/series 231, Petition of W.F. Durgin

description: &lt;p&gt;Petition subject: Property &lt;/p&gt; &lt;p&gt;Original: &lt;a href="http://nrs.harvard.edu/urn-3:FHCL:25763634"&gt;http://nrs.harvard.edu/urn-3:FHCL:25763634&lt;/a&gt; &lt;/p&gt; &lt;p&gt;Date of creation: (unknown) &lt;/p&gt; &lt;p&gt;Petition location: Massachusetts &lt;/p&gt; &lt;p&gt;Legislator, committee, or address that the petition was sent to: David Mayhew, Tisbury; committee on public charitable institutions &lt;/p&gt; &lt;p&gt;Selected signatures:&lt;ol&gt;&lt;li&gt;W.F. Durgin&lt;/li&gt;&lt;/ol&gt; &lt;/p&gt; &lt;p&gt;Actions taken on dates: 1872-02-21,1872-02-24 &lt;/p&gt; &lt;p&gt;Legislative action: Received in the House on February 21, 1873 and referred to the committee on public charitable institutions and sent for concurrence and received in the Senate on February 24, 1873 and concurred &lt;/p&gt; &lt;p&gt;Total signatures: 1 &lt;/p&gt; &lt;p&gt;Legislative action summary: Received, referred, sent, received, concurred &lt;/p&gt; &lt;p&gt;Legal voter signatures (males not identified as non-legal): 1 &lt;/p&gt; &lt;p&gt;Female only signatures: No &lt;/p&gt; &lt;p&gt;Identifications of signatories: in behalf of Mrs. Priscilla Freeman and other surviving members of the Deep Bottom tribe of Indians &lt;/p&gt; &lt;p&gt;Prayer format was &lt;a href="http://en.wikipedia.org/wiki/Printing"&gt;printed&lt;/a&gt; vs. &lt;a href="http://en.wikipedia.org/wiki/Manuscript"&gt;manuscript&lt;/a&gt;: Manuscript &lt;/p&gt; &lt;p&gt;Additional non-petition or unrelated documents available at archive: additional documents available &lt;/p&gt; &lt;p&gt;Additional archivist notes: burial lot, lands, white people, sheep pasture, unfenced, cultivated ground, roads, schools, fences, aid, parents, state paupers, physician's bills, doctor, medical &lt;/p&gt; &lt;p&gt;Location of the petition at the Massachusetts Archives of the Commonwealth: Senate Unpassed 1873, H 297 rejected &lt;/p&gt; &lt;p&gt;Acknowledgements: Supported by the National Endowment for the Humanities (PW-5105612), Massachusetts Archives of the Commonwealth, Radcliffe Institute for Advanced Study at Harvard University, Center for American Political Studies at Harvard University, Institutional Development Initiative at Harvard University, and Harvard University Library.&lt;/p&gt;
DOI: 10.7910/dvn/5bvogw
title: Imperfect Orange: An open image dataset of imperfect Oranges for machine vision enabled grading of produce based on visual characteristics.

description: Open Image Data Set of Imperfect Oranges
DOI: 10.7910/dvn/8wdlpb
title: Replication Data for: Election Fraud, YouTube, and Public Perception of the Legitimacy of President Biden

description: Replication material for "Election Fraud, YouTube, and Public Perception of the Legitimacy of President Biden", published at the Journal of Online Trust and Safety.
DOI: 10.7910/dvn/gzjot3
title: Individual State Legislator Shor-McCarty Ideology Data, July 2020 update

description: The Shor-McCarty individual state legislator ideology data is being released as an update to the data underlying Shor and McCarty 2011. The new data features 24,716 unique state legislators (compared with 22,868 in the previous release). The ideology measures are based on individual-level ideal point estimates described fully in that article. Measures are all in NPAT common ideological space to facilitate explicit comparisons across time and between and within states. The new data spans 1993 through 2018.
DOI: 10.7910/dvn/l1dvih
title: M-PESA Kenya Round 5

description: Round 5