cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.35078/z2xxic/qsxrlj
title: São Mateus E.jpg

description: :unav
DOI: 10.35078/z2xxic/dv9s1w
title: Vargem B.jpg

description: :unav
DOI: 10.35078/z2xxic/b7pduf
title: Criminoso A.jpg

description: :unav
DOI: 10.35078/z2xxic/dgdj0y
title: São Mateus C.jpg

description: :unav
DOI: 10.35078/z2xxic/xbfm3m
title: Ingá G.jpg

description: :unav
DOI: 10.35078/z2xxic/iy3rwa
title: DICIONARIO_KARDEX_PROGRAMA_CONTROLE_DOENÇA_CHAGAS.pdf

description: Dicionário para interpretação da ficha epidemiologica (Kardex)
DOI: 10.5281/zenodo.6411102
title: Data for "Transient Density-Induced Dipolar Interactions in a Thin Vapor Cell"

description: Data for "Transient Density-Induced Dipolar Interactions in a Thin Vapor Cell" as .npz files. The "datasets.csv" file lists, where each dataset is used in the journal publication. Additionally, there are two Python scripts (.py) which show how to load and plot a dataset. The dataset can be selected by changing the file name string in the script. Note, that for loading and plotting the simulation dataset the "plot_simulation.py" script has to be used.
DOI: 10.5281/zenodo.5541605
title: Data for "Transient Density-Induced Dipolar Interactions in a Thin Vapor Cell"

description: Data for "Transient Density-Induced Dipolar Interactions in a Thin Vapor Cell" as .npz files. The "datasets.csv" file lists, where each dataset is used in the journal publication. Additionally, there are two Python scripts (.py) which show how to load and plot a dataset. The dataset can be selected by changing the file name string in the script. Note, that for loading and plotting the simulation dataset the "plot_simulation.py" script has to be used.
DOI: 10.6069/9tvb-5r69
title: A scalable, targeted mass spectrometry-based assay for monitoring the progression of herpesvirus infections

description: Herpesviruses are large, double-stranded DNA viruses that infect up to 100% of the population and represent a significant public health burden. Throughout their finely controlled lifecycles, herpesviruses express between 70 and 250 viral proteins with expression patterns that are characterized by a temporal cascade whereby subsequent expression of viral genes depends on the prior expression of other viral genes for successful infection. Considering their substantial protein coding capacity, the development of a method to systematically monitor viral protein levels throughout infection is not readily attainable using antibody or RNA-based approaches. Here, we present targeted mass spectrometry-based assays that comprehensively quantify viral protein levels for viruses that span the alpha-, beta-, and gamma-herpesvirus subfamilies: herpes simplex virus type I (HSV-1), human cytomegalovirus (HCMV), and Kaposi sarcoma-associated herpesvirus (KSHV), respectively. Our parallel reaction monitoring (PRM)-based assays measure 59 (HSV-1), 90 (HCMV), and 62 (KSHV) viral proteins that represent all temporal classes of gene expression as well as different components of the virion. We then applied our assays to assess the effects of clinically relevant as well as other potential antiviral agents on viral protein levels. We also showed that these assays are applicable to a wide variety of viral strains and infection models.
DOI: 10.5281/zenodo.6501877
title: Dataset: Relationship extraction for knowledge graph creation from biomedical literature (Gene-Disease relationships)

description: This is the dataset used for classifying Gene-Disease relationship types from sentences. The dataset consists of 3 files: manually_annotated_set.xlsx - set of 2000 manualy annotated sentences with entities Unbalanced_dataset.xlsx - set of 12000 sentences, out of which 2000 are from the first set, manually annotated, and the rest have been added using rule based method by adding sentences where extraction had confidence 1. Balanced_dataset_SUB_PRED.xlsx - balanced dataset generated by taking 2000 manually annotated sentences, but then adding sentences from the rule-based method with confidence 1 in such a way that each relationship class had at least 1400 sentences (for biomarkers, we could obtain 1243 sentences with confidence 1 from a processed portion of the data we had at the time of building the dataset).
description: {"references": ["Milosevic, Nikola, and Wolfgang Thielemann. \"Relationship extraction for knowledge graph creation from biomedical literature.\" arXiv preprint arXiv:2201.01647 (2022).", "Milosevic, Nikola, and Wolfgang Thielemann. \"Relationship extraction for knowledge graph creation from biomedical literature.\" Journal of Web Semantics (2022)."]}
DOI: 10.6084/m9.figshare.19673727
title: 3L-FMCW Radar Dataset

description: Original dataset including single-person data collection and multiple people data collection. This is a pre-processing dataset as input for DL models.
DOI: 10.6084/m9.figshare.13168545
title: Possible biological processes controlled by the circatidal clock in the mangrove cricket inferred from transcriptome analysis

description: Intertidal dwellers exhibit a circatidal rhythm corresponding to the tidal cycles, but its molecular mechanism remains largely unknown. The mangrove cricket <i>Apteronemobius asahinai</i> simultaneously exhibits circatidal and circadian rhythms in its locomotor activity. In <i>A. asahinai</i>, it is considered that the circatidal rhythm is generated by the circatidal clock, and its molecular mechanism appears to differ from that of the circadian clock. For the molecular dissection, it is necessary to investigate the effects of a candidate gene disruption in several circatidal rhythms. However, the circatidal rhythms other than locomotor activity have not been examined in this species. Here, to identify biological processes related to the circatidal rhythm, we performed whole-transcriptome analysis using RNA sequencing with RNA samples extracted from whole crickets. Under a light-dark cycle without tidal stimuli, more contigs showed a diel expression pattern than a tidal expression pattern. Gene ontology (GO) enrichment analysis revealed that most GO terms overrepresented in contigs related to the tidal cycle were also overrepresented in contigs related to the diel cycle. GO terms specific to tide-related contigs were related to cuticle development, melanization, and sclerotization. These results suggest that physiological events in the cuticle may be controlled by the circatidal clock.
DOI: 10.6084/m9.figshare.13168545.v1
title: Possible biological processes controlled by the circatidal clock in the mangrove cricket inferred from transcriptome analysis

description: Intertidal dwellers exhibit a circatidal rhythm corresponding to the tidal cycles, but its molecular mechanism remains largely unknown. The mangrove cricket <i>Apteronemobius asahinai</i> simultaneously exhibits circatidal and circadian rhythms in its locomotor activity. In <i>A. asahinai</i>, it is considered that the circatidal rhythm is generated by the circatidal clock, and its molecular mechanism appears to differ from that of the circadian clock. For the molecular dissection, it is necessary to investigate the effects of a candidate gene disruption in several circatidal rhythms. However, the circatidal rhythms other than locomotor activity have not been examined in this species. Here, to identify biological processes related to the circatidal rhythm, we performed whole-transcriptome analysis using RNA sequencing with RNA samples extracted from whole crickets. Under a light-dark cycle without tidal stimuli, more contigs showed a diel expression pattern than a tidal expression pattern. Gene ontology (GO) enrichment analysis revealed that most GO terms overrepresented in contigs related to the tidal cycle were also overrepresented in contigs related to the diel cycle. GO terms specific to tide-related contigs were related to cuticle development, melanization, and sclerotization. These results suggest that physiological events in the cuticle may be controlled by the circatidal clock.
DOI: 10.5281/zenodo.5816934
title: Empirical evidence for recent global shifts in vegetation resilience

description: Data and codes for the publication: Smith, T., Traxl, D. & Boers, N. Empirical evidence for recent global shifts in vegetation resilience. <em>Nat. Clim. Chang.</em> (2022). https://doi.org/10.1038/s41558-022-01352-2 Data is described in 'README.txt'.
DOI: 10.5281/zenodo.5816933
title: Empirical evidence for recent global shifts in vegetation resilience

description: Data and codes for the publication: Smith, T., Traxl, D. & Boers, N. Empirical evidence for recent global shifts in vegetation resilience. <em>Nat. Clim. Chang.</em> (2022). https://doi.org/10.1038/s41558-022-01352-2 Data is described in 'README.txt'.
DOI: 10.6084/m9.figshare.19426253.v1
title: adult model

description: Adult model
DOI: 10.34740/kaggle/dsv/3544551
title: Mahanagar Yatayat Dataset
DOI: 10.6084/m9.figshare.19674294
title: Lightsheet dataset of midgut morphogenesis in w, 48Y-GAL4; klar x w; UAS-histRFP embryo (Figures 1/3)

description: Lightsheet dataset of midgut morphogenesis in w, 48Y-GAL4; klar x w; UAS-histRFP embryo <br> TIFF of pullback images, each image taken 60 seconds apart <br> spcutMeshSmRS_0000XX.mat files provide the geometry mapping from 3D space in microns to 2D space seen in the TIFF images. For the images, 2D space limits span (x axis) s=[0, max(spcutMeshSmRS.uv(:, 1))] and (y axis) phi=[0,1]. The physical location in space of phi=0 is identical to phi=1, as the gut is mapped as a topological cylinder.
DOI: 10.6084/m9.figshare.19674294.v1
title: Lightsheet dataset of histone RFP (Figures 1/3)

description: Lightsheet dataset of w; 48Y-GAL4; klar x UAS-histRFP, pulled back into 2D images. <br> Time resolution is 1 minute per frame. <br> The TIFF corresponds to an (s,phi) pullback representation, with details of the mapping stored in .mat files. <br>
DOI: 10.5281/zenodo.4444797
title: Database - A Calculus of Tracking: Theory and Practice

description: A manually curated sample (Top 100 Alexa domains only) of a OpenWPM database obtained from Princeton Web Census (https://webtransparency.cs.princeton.edu/webcensus/). The sample is used to instantiate the model for the paper "A Calculus of Tracking: Theory and Practice" to appear in PETS 2021. Accepted manuscript: https://petsymposium.org/2021/files/papers/issue2/popets-2021-0027.pdf GitHub page: https://github.com/giorgioditizio/calculus_of_tracking
DOI: 10.5281/zenodo.4444796
title: Database - A Calculus of Tracking: Theory and Practice

description: A manually curated sample (Top 100 Alexa domains only) of a OpenWPM database obtained from Princeton Web Census (https://webtransparency.cs.princeton.edu/webcensus/). The sample is used to instantiate the model for the paper "A Calculus of Tracking: Theory and Practice" to appear in PETS 2021. Accepted manuscript: https://petsymposium.org/2021/files/papers/issue2/popets-2021-0027.pdf GitHub page: https://github.com/giorgioditizio/calculus_of_tracking
DOI: 10.5285/dd2837f0-b721-7b13-e053-6c86abc0cee7
title: HiWinGS expedition (North Atlantic, October - November 2013) 10 minute meteorological data.

description: The data included in this publication are 10 minute averages of the measured bulk meteorological parameters for the HiWinGS expedition, which took place on board the R/V Knorr in the North Atlantic from the 9th October - 14th November 2013. This was a large-scale study of air-sea gas fluxes, including meteorological, wave and bubble parameters. The complete meteorological data record for this expedition can be accessed with a guest login at ftp://ftp1.esrl.noaa.gov/psd3/cruises/HIWINGS_2013/Collective_Archive. Accompanying bubble data can be found at https://doi.org/10.5285/c972e316-2b93-1b4e-e053-6c86abc02285 (Czerski et al., 2013), and the wave data can be found at https://doi.org/10.5285/c9ae04d6-32d2-73f1-e053-6c86abc0c833 (Brooks, 2013).
DOI: 10.6084/m9.figshare.19674390.v1
title: statistical analysis

description: data analysis
DOI: 10.6084/m9.figshare.19674390
title: statistical analysis

description: data analysis
DOI: 10.6084/m9.figshare.19674330.v1
title: Data from What Does Polly Say? A Survey of Vocal Mimicry in Companion Parrots

description: Data form the bassis of all analyses reported in benedict et al. "What Does Polly Say? A Survey of Vocal Mimicry in Companion Parrots" <br> The data set includes information about the number of "words' "phrases" and "sounds" mimicked by 877 parrots, along with sex, age, and social interaction information.
DOI: 10.5066/p9wdllp0
title: The North American Freshwater Migratory Fish Database (NAFMFD): Characterizing the migratory life histories of freshwater fishes of Canada, the United States, and Mexico

description: We developed the North American Freshwater Migratory Fish Database (NAFMFD) that synthesizes current knowledge of migratory status, pattern, and behavior for native and non-native freshwater fish species throughout North America, including 1,241 species representing 79 families and 322 genera.
DOI: 10.6084/m9.figshare.19674300
title: Information theory paper data

description: This is electrophysiological data of reprogrammed neurons derived from iPSCs of bipolar disorder patients.
DOI: 10.5066/p9lrhnl5
title: Isolation of Methylmercury Using Distillation and Anion-Exchange Chromatography for Isotopic Analyses in Natural Matrices Data Release

description: This dataset consists of concentration and isotopic data for a method designed to isolate and analyze methylmercury. Several matrices (lab-based, and natural) were tested to ensure that the method was capable of recovering methylmercury amendments. Additionally, natural matrices (plankton and sediment) with ambient methylmercury were also analyzed to ensure that the method could be successfully applied to natural matrices. Separation tests for sediment, water, and biotic matrices showed acceptable recoveries (98%, n = 54) and reproducible d202Hg isotope results (2SD of 0.15 ) down to 5 ng of MeHg. This dataset is part of a complimentary paper published in Analytical and Bioanalytical Chemistry (https://doi.org/10.1007/s00216-019-02277-0) published December 2019.
DOI: 10.5066/p9vgqvus
title: Source Identification of Mercury and Methylmercury using Stable Isotope Analysis in the Fox River, WI

description: The lower Fox River in Wisconsin is a heavily industrialized system and the major tributary to Green Bay within Lake Michigan. The region has been a listed as Area of Concern by the United States Environmental Protection Agency (USEPA), indicating severe impairment of the ecological health of the system. Remedial action has taken place along the river to remove extensive polychlorinated biphenyl (PCB) contamination. However, it was unknown if mercury (Hg), also derived from industrial activity, remained within sediments and actively bioaccumulated within the food web. Mercury stable isotopes were analyzed in sediments and waters collected below the DePere Dam and upstream at Lake Winnebago to compare if Hg sources within the Fox River and determine the extent of industrial contamination. Speciation, methylmercury (MeHg), and isotope measurements were made within biota (prey fish and invertebrates) below DePere Dam to determine if industrial Hg was bioavailable for methylation and bioaccumulation. The interpretation of these results can be found in a companion journal articles published in Environmental Science and Technology (https://doi.org/10.1021/acsestwater.1c00285)
DOI: 10.6084/m9.figshare.19674432
title: Source data for Holden et al. (2022)

description: Source data for all figures, tables, movies, and data sets in the manuscript entitled 'A lineage-specific Exo70 is required for receptor kinase-mediated immunity in barley' by Holden et al. (2022).
DOI: 10.6084/m9.figshare.19674429
title: Career exploration in Central City and Coast area.xlsx

description: This is processed data from an overview of career exploration in the city center and coastal areas of the city of Cirebon, Indonesia.
DOI: 10.6084/m9.figshare.19674429.v1
title: Career exploration in Central City and Coast area.xlsx

description: This is processed data from an overview of career exploration in the city center and coastal areas of the city of Cirebon, Indonesia.
DOI: 10.13012/b2idb-6489931_v1
title: Data for: Functional traits and responses to nutrient and mycorrhizal addition are inconsistently related to wetland plant species’ coefficients of conservatism

description: This is the core data for Zinnen et al., "Functional traits and responses to nutrient and mycorrhizal addition are inconsistently related to wetland plant species’ coefficients of conservatism." This is submitted to Wetlands Ecology and Management. Two datasets are submitted here. The first is greenhouse-collected data of 9 plant traits and concurrent treatment responses of Illinois wetland plant species. The second are field-collected leaf trait data of Illinois wetland plant species. These data are analyzed in the paper. Please refer to the main manuscript to see how these data were produced and specific analyses.
DOI: 10.34992/jz6d-rn58
title: LWRC Seabird Rosette M/V NAMAO
DOI: 10.34992/24h0-tx22
title: LWRC Field Logs
DOI: 10.6073/pasta/87de3421e155b05fd166b17d17c73c6d
title: Canopy-Atmosphere Exchange of Carbon, Water and Energy at Harvard Forest EMS Tower since 1991

description: The tower-based CO2 measurements and key meteorological drivers are intended to examine how regional and ecosystem level processes in a mid-latitude forest contribute to global carbon cycling. Specifically, we endeavor to understand quantitatively how and why forested ecosystems take up or release carbon, on time scales from hours to decades, and to elucidate responses to climate changes and management interventions. The tower was installed 1989 and the resulting eddy-flux measurements constitute the longest running record of the net-ecosystem carbon exchange in a North American Forest. The resulting long-term record of Net Ecosystem Exchange (NEE) has shown the effects of climate anomalies on carbon fluxes for seasonal and annual time scales. For example, reduced soil frost allows greater respiration in the winter leading to lower C sequestration. Cumulative gross photosynthesis depends on when the canopy emerges in the spring. Warmer springtime temperatures lead to greater uptake of C. As the NEE record is extended and augmented by supporting ecological measurements, we can further identify longer-term effects of climate perturbations on carbon fluxes and further define the relationship between stand history and carbon sequestration. Climatic anomalies in one season or year may have a longer-term effect on the sequestration of carbon in subsequent seasons or years. The flux and ecological measurements are coordinated with studies at other sites through the AmeriFlux network. By examining the relationships between carbon fluxes and the driving physical and biological variables across a range of sites we are enhancing understanding of the processes that control NEE.
DOI: 10.5281/zenodo.6501588
title: The predator problem and PCR primers in molecular dietary analysis: swamped or silenced; depth or breadth? - Dataset

description: Raw sequencing data and other metadata files are associated with Cuff et al. (2022), available at https://doi.org/10.5281/zenodo.4708418 The associated code, files and description pertain to the non-metric multi-dimensional scaling plot presented in this review (Figure 4). The code and data required for the boxplot (Figure 3) are given at the Zenodo link above (for Cuff et al. 2022). Data were collected and processed according to Cuff et al., (2022) up to the point of aggregating the two primer pair datasets. Binary matrices for prey detections were combined for the two primer pairs, but each sample represented separately for each primer pair (i.e., not aggregated by sample). Instances where taxa were only identified to genus (or lower, e.g., family) level by only one of the primer pairs resulted in aggregation for the other primer pair at that taxonomic level, except for species within those groups that were reliably identified to species level by both primers. Samples for which only one primer pair generated prey data were removed. The non-metric multidimensional scaling spider plot was created using ‘metaMDS’ with a Jaccard distance matrix and 999 tries in the ‘vegan’ package (Oksanen et al., 2016). Outliers that obscured the overall patterns were removed, the final plot having a stress of 0.061. Point colours were assigned using the ‘set1’ palette of the ‘RColorBrewer’ package (Neuwirth, 2014) and the final plot created using ‘ggplot2’ (Wickham, 2016).
description: {"references": ["Cuff, J. P., Tercel, M. P. T. G., Drake, L. E., Vaughan, I. P., Bell, J. R., Orozco-terWengel, P., \u2026 Symondson, W. O. C. (2022). Density-independent prey choice, taxonomy, life history and web characteristics determine the diet and biocontrol potential of spiders (Linyphiidae and Lycosidae) in cereal crops. Environmental DNA, in press.", "Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O'Hara, R. B., \u2026 Wagner, H. (2016). vegan: Community Ecology Package. Retrieved from https://cran.r-project.org/package=vegan", "Neuwirth, E. (2014). RColorBrewer: ColorBrewer palettes. Retrieved from https://cran.r-project.org/package=RColorBrewer", "Wickham, H. (2016). ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag. Retrieved from https://ggplot2.tidyverse.org"]}
DOI: 10.5281/zenodo.6501587
title: The predator problem and PCR primers in molecular dietary analysis: swamped or silenced; depth or breadth? - Dataset

description: Raw sequencing data and other metadata files are associated with Cuff et al. (2022), available at https://doi.org/10.5281/zenodo.4708418 The associated code, files and description pertain to the non-metric multi-dimensional scaling plot presented in this review (Figure 4). The code and data required for the boxplot (Figure 3) are given at the Zenodo link above (for Cuff et al. 2022). Data were collected and processed according to Cuff et al., (2022) up to the point of aggregating the two primer pair datasets. Binary matrices for prey detections were combined for the two primer pairs, but each sample represented separately for each primer pair (i.e., not aggregated by sample). Instances where taxa were only identified to genus (or lower, e.g., family) level by only one of the primer pairs resulted in aggregation for the other primer pair at that taxonomic level, except for species within those groups that were reliably identified to species level by both primers. Samples for which only one primer pair generated prey data were removed. The non-metric multidimensional scaling spider plot was created using ‘metaMDS’ with a Jaccard distance matrix and 999 tries in the ‘vegan’ package (Oksanen et al., 2016). Outliers that obscured the overall patterns were removed, the final plot having a stress of 0.061. Point colours were assigned using the ‘set1’ palette of the ‘RColorBrewer’ package (Neuwirth, 2014) and the final plot created using ‘ggplot2’ (Wickham, 2016).
description: {"references": ["Cuff, J. P., Tercel, M. P. T. G., Drake, L. E., Vaughan, I. P., Bell, J. R., Orozco-terWengel, P., \u2026 Symondson, W. O. C. (2022). Density-independent prey choice, taxonomy, life history and web characteristics determine the diet and biocontrol potential of spiders (Linyphiidae and Lycosidae) in cereal crops. Environmental DNA, in press.", "Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O'Hara, R. B., \u2026 Wagner, H. (2016). vegan: Community Ecology Package. Retrieved from https://cran.r-project.org/package=vegan", "Neuwirth, E. (2014). RColorBrewer: ColorBrewer palettes. Retrieved from https://cran.r-project.org/package=RColorBrewer", "Wickham, H. (2016). ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag. Retrieved from https://ggplot2.tidyverse.org"]}
DOI: 10.15139/s3/mociw3
title: 2017 Arkansas Poll

description: 2017 Arkansas Poll data
DOI: 10.15139/s3/njaisb
title: 2019 Arkansas Poll

description: 2019 Arkansas Poll data
DOI: 10.15139/s3/6ujavp
title: 2020 Arkansas Poll

description: 2020 Arkansas Poll data