cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24916101
title: Data: The chemical characteristics and mixing behaviors of particulate organic matter from small subtropical rivers in coastal Gulf of Mexico.

description: Abstract.Rivers transport a substantial amount of dissolved and particulate organic matter (DOM and POM) to the oceans. In estuaries, the transition between DOM and POM due to dissolution or flocculation and their chemical compositions are key in determining their remineralization potential and thus influence the biogeochemical cycling of carbon and nitrogen. While much effort has been focused on trace metals, minerals, and nutrients in estuaries, the mixing behaviors of POM have been understudied despite their biogeochemical and ecological importance. In this work, water from several rivers from the northwestern Gulf of Mexico was mixed with seawater in different proportions, and the amount as well as the chemical characteristics of POM in the mixtures were measured. POM was characterized by measuring organic carbon and nitrogen contents, carbon and nitrogen stable isotopes (δ<sup>13</sup>C and δ<sup>15</sup>N), and total hydrolyzable amino acids (THAA). The results showed that POM in most cases behaved conservatively after the mixing of river water with seawater.However, rapid POM formation was observed in one of the seven experiments, which was conducted in 2021 with Mission River water. The amount of particulate organic carbon formed in this experiment (41 µM) was 12% of the dissolved organic carbon at a salinity of 6. The formed POM was more depleted in <sup>13</sup>C and had a higher POC/PON ratio than expected for conservative mixing, suggesting that terrestrial DOM, likely sourced from lignins and/or lipids, may have contributed to the flocculates. The short duration of these laboratory experiments under dim or dark conditions excludes the potential effects from biotic or photochemical processes, and thus the observations should be attributed to the rapid physical transformation of DOM to POM or flocculation, particularly when the riverine OM is contributed more from terrestrial sources than in situ production. Overall, although POM mostly behaved conservatively, substantial POM can be produced from DOM under right conditions, and these results shed new light on the biogeochemical cycling of organic matter in subtropical estuaries.
DOI: 10.6084/m9.figshare.24916101.v1
title: Data: The chemical characteristics and mixing behaviors of particulate organic matter from small subtropical rivers in coastal Gulf of Mexico.

description: Abstract.Rivers transport a substantial amount of dissolved and particulate organic matter (DOM and POM) to the oceans. In estuaries, the transition between DOM and POM due to dissolution or flocculation and their chemical compositions are key in determining their remineralization potential and thus influence the biogeochemical cycling of carbon and nitrogen. While much effort has been focused on trace metals, minerals, and nutrients in estuaries, the mixing behaviors of POM have been understudied despite their biogeochemical and ecological importance. In this work, water from several rivers from the northwestern Gulf of Mexico was mixed with seawater in different proportions, and the amount as well as the chemical characteristics of POM in the mixtures were measured. POM was characterized by measuring organic carbon and nitrogen contents, carbon and nitrogen stable isotopes (δ<sup>13</sup>C and δ<sup>15</sup>N), and total hydrolyzable amino acids (THAA). The results showed that POM in most cases behaved conservatively after the mixing of river water with seawater.However, rapid POM formation was observed in one of the seven experiments, which was conducted in 2021 with Mission River water. The amount of particulate organic carbon formed in this experiment (41 µM) was 12% of the dissolved organic carbon at a salinity of 6. The formed POM was more depleted in <sup>13</sup>C and had a higher POC/PON ratio than expected for conservative mixing, suggesting that terrestrial DOM, likely sourced from lignins and/or lipids, may have contributed to the flocculates. The short duration of these laboratory experiments under dim or dark conditions excludes the potential effects from biotic or photochemical processes, and thus the observations should be attributed to the rapid physical transformation of DOM to POM or flocculation, particularly when the riverine OM is contributed more from terrestrial sources than in situ production. Overall, although POM mostly behaved conservatively, substantial POM can be produced from DOM under right conditions, and these results shed new light on the biogeochemical cycling of organic matter in subtropical estuaries.
DOI: 10.6084/m9.figshare.16912366.v19
title: antspymm helper data

description: multi-channel and time series example data for antsx processing ... with priors
DOI: 10.34740/kaggle/dsv/7482105
title: Public Opinion Russia Ukraine War (Updated Daily)
DOI: 10.3886/e189062v1
title: Data-set-mcs

description: This dataset has 414 responses from HEI faculty
DOI: 10.3886/e189062
title: Data-set-mcs

description: This dataset has 414 responses from HEI faculty
DOI: 10.3886/e189062v2
title: Data-set-mcs

description: This dataset has 414 responses from HEI faculty
DOI: 10.5281/zenodo.10473680
title: 18S non-redundant database of Blastocystis and its 28 subtypes formatted for DADA2

description: DADA2_Blastocystis.fa

This is an updated 18S Blastocystis database containing 636 sequences, 606 Blastocystis sequences with verified identification to subtype level and 30 Blastocystis sequences from non-mammalian and non-bird organisms.

This DB includes data from two origins: 1) The sequences identified as Blastocystis and identified to subtype level which include the region amplified by the MiniB18S_81 primers (Cabodevilla et al., 2023) present in the GenBank nucleotide database. 2) The sequences from the reference databases “Blastocystis subtype reference sequences - ST1-ST17, ST21 and ST23-ST32” and “Blastocystis sequences from non-human/other mammal/bird sources” proposed by Stensvold & Clark (2020) that were not obtained from the GenBank search.

For more information on data curation, see Caro et al. (2024).

This database is provided in FASTA format (FASTA_Blastocystis.fasta) and also formatted for direct use with DADA2 (DADA2_Blastocystis.fa). 

 

DADA2_Silva_v132_18S_&_Blastocystis.fa

In this database the Blastocystis sequences are combined with those eukaryotic sequences of Silva v132 database provided by Cabodevilla (2024). This 18S database is formatted for DADA2 and includes 26990 sequences, 26324 non-redundant sequences from eukaryotic organisms other than Blastocystis, 20 from bacteria, 10 from archaea, and the 636 Blastocystis sequences (DADA2_Silva_v132_18S_&_Blastocystis.fa).

–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––

 

–> If you use the Blastocystis database in your work, please cite the article in which this database is described (Caro et al., 2024) and this Zenodo repository. On the other hand, if you use the combined database (Silva v132 + Blastocystis), in addition to the above, please also cite the reference to the Silva database (Quast et al., 2013) and the article describing that database (del Portillo et al., 2024).

 

 

The SILVA v132 database is release under a Creative Commons Attribution 4.0 (CC-BY 4.0) license. Thus documents are freely available for academic and commercial use as long as SILVA is credited as original author and a link to the full license is provided.

https://creativecommons.org/licenses/by/4.0/
DOI: 10.5281/zenodo.10473681
title: 18S non-redundant database of Blastocystis and its 28 subtypes formatted for DADA2

description: DADA2_Blastocystis.fa

This is an updated 18S Blastocystis database containing 636 sequences, 606 Blastocystis sequences with verified identification to subtype level and 30 Blastocystis sequences from non-mammalian and non-bird organisms.

This DB includes data from two origins: 1) The sequences identified as Blastocystis and identified to subtype level which include the region amplified by the MiniB18S_81 primers (Cabodevilla et al., 2023) present in the GenBank nucleotide database. 2) The sequences from the reference databases “Blastocystis subtype reference sequences - ST1-ST17, ST21 and ST23-ST32” and “Blastocystis sequences from non-human/other mammal/bird sources” proposed by Stensvold & Clark (2020) that were not obtained from the GenBank search.

For more information on data curation, see Caro et al. (2024).

This database is provided in FASTA format (FASTA_Blastocystis.fasta) and also formatted for direct use with DADA2 (DADA2_Blastocystis.fa). 

 

DADA2_Silva_v132_18S_&_Blastocystis.fa

In this database the Blastocystis sequences are combined with those eukaryotic sequences of Silva v132 database provided by Cabodevilla (2024). This 18S database is formatted for DADA2 and includes 26990 sequences, 26324 non-redundant sequences from eukaryotic organisms other than Blastocystis, 20 from bacteria, 10 from archaea, and the 636 Blastocystis sequences (DADA2_Silva_v132_18S_&_Blastocystis.fa).

–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––

 

–> If you use the Blastocystis database in your work, please cite the article in which this database is described (Caro et al., 2024) and this Zenodo repository. On the other hand, if you use the combined database (Silva v132 + Blastocystis), in addition to the above, please also cite the reference to the Silva database (Quast et al., 2013) and the article describing that database (del Portillo et al., 2024).

 

 

The SILVA v132 database is release under a Creative Commons Attribution 4.0 (CC-BY 4.0) license. Thus documents are freely available for academic and commercial use as long as SILVA is credited as original author and a link to the full license is provided.

https://creativecommons.org/licenses/by/4.0/
DOI: 10.25345/c5377659k
title: MassIVE MSV000093924 - Deep peatland microbial community dynamics and organic matter priming in response to labile carbon additions
title: Soil samples incubated with and without labeled/unlabeled glucose. Samples were run by LC MS/MS (21T), GC MS and 12T FTICR MS.
DOI: 10.34943/b7c8fb60-3d69-4958-9a47-8422100bf82f
title: Cambridge Bay Ice Profiler Deployed 2023-08-01

description: The ASL Shallow Water Ice Profiler 53038 was deployed on 2023-08-01 at Cambridge Bay. Cambridge Bay is located on Victoria Island in the Kitikmeot Region of Nunavut, Canada. This device is a Ice Profiler. Ice Profiler instruments are upward looking single beam echosounders mounted on the ocean floor and are specialized to measure ice draft. They can estimate ice forces, determine the thickness of ice, and the detail of the underside of sea-ice. It was deployed on a fixed platform. Data from this deployment were archived and made available through Ocean Networks Canada's Oceans 3.0 digital infrastructure, with quality assurance and derived data products following established practices.
DOI: 10.5519/qd.qgb3xdi0
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.10570131
title: Reconstructed Sub-Daily Rainfall Annual Maxima for Southern Italy

description: The databases of sub-daily (1, 3, 6, 12 and 24 hours) rainfall annual maxima were constructed using all available records and extended using spatial interpolation methods, such as the spatially-constrained ordinary kriging proposed by Avino et al. (2021). The data reconstruction was needed to fill the existing gaps in the time series due to malfunctioning and repeated changes experienced by the monitoring network (activation and removal of rain gauges, changes in position and type of sensor). The final database composed by measured and reconstructed data consists of about 25000 annual maxima (which include about 17000 observations) from 910 rain gauges belonging to southern Italy covering the period from 1970 to 2020.
DOI: 10.5281/zenodo.10465588
title: Reconstructed Sub-Daily Rainfall Annual Maxima for Southern Italy

description: The databases of sub-daily (1, 3, 6, 12 and 24 hours) rainfall annual maxima were constructed using all available records and extended using spatial interpolation methods, such as the spatially-constrained ordinary kriging proposed by Avino et al. (2021). The data reconstruction was needed to fill the existing gaps in the time series due to malfunctioning and repeated changes experienced by the monitoring network (activation and removal of rain gauges, changes in position and type of sensor). The final database composed by measured and reconstructed data consists of about 25000 annual maxima (which include about 17000 observations) from 910 rain gauges belonging to southern Italy covering the period from 1970 to 2020.
DOI: 10.5281/zenodo.10570109
title: Reconstructed Sub-Daily Rainfall Annual Maxima for Southern Italy

description: The databases of sub-daily (1, 3, 6, 12 and 24 hours) rainfall annual maxima were constructed using all available records and extended using spatial interpolation methods, such as the spatially-constrained ordinary kriging proposed by Avino et al. (2021). The data reconstruction was needed to fill the existing gaps in the time series due to malfunctioning and repeated changes experienced by the monitoring network (activation and removal of rain gauges, changes in position and type of sensor). The final database composed by measured and reconstructed data consists of about 25000 annual maxima (which include about 17000 observations) from 910 rain gauges belonging to southern Italy covering the period from 1970 to 2020.
DOI: 10.5281/zenodo.10570132
title: Osseous tools and personal ornaments from the Epigravettian sequence at Badanj

description: The Late Upper Palaeolithic (Epigravettian) sequence at Badanj has yielded an important dataset about the occupation of the hinterland of the Eastern Adriatic catchment zone in the late Pleniglacial. The site also harbors one of the rare occurrences of Upper Palaeolithic parietal “art” in southeastern Europe in the form of a large rock engraving. Another notable aspect of the site is the presence of engravings on portable objects made from bone. The first excavations at Badanj, conducted in 1976–1979 in the zone around the engraved rock, yielded a surprisingly large number of personal ornaments (over 1000 specimens) from a variety of primarily marine gastropods, scaphopods, and bivalves, and red deer canines. Here we review what is currently known about the site and report our preliminary findings from the study of the collection of personal ornaments as well as osseous tools, some of which were marked by regular incisions forming decorative motifs. We also report two new direct accelerator mass spectrometry (AMS) dates on antler barbed points.
DOI: 10.5281/zenodo.10570133
title: Osseous tools and personal ornaments from the Epigravettian sequence at Badanj

description: The Late Upper Palaeolithic (Epigravettian) sequence at Badanj has yielded an important dataset about the occupation of the hinterland of the Eastern Adriatic catchment zone in the late Pleniglacial. The site also harbors one of the rare occurrences of Upper Palaeolithic parietal “art” in southeastern Europe in the form of a large rock engraving. Another notable aspect of the site is the presence of engravings on portable objects made from bone. The first excavations at Badanj, conducted in 1976–1979 in the zone around the engraved rock, yielded a surprisingly large number of personal ornaments (over 1000 specimens) from a variety of primarily marine gastropods, scaphopods, and bivalves, and red deer canines. Here we review what is currently known about the site and report our preliminary findings from the study of the collection of personal ornaments as well as osseous tools, some of which were marked by regular incisions forming decorative motifs. We also report two new direct accelerator mass spectrometry (AMS) dates on antler barbed points.
DOI: 10.34740/kaggle/dsv/7482261
title: crypto-data-daily-updates
DOI: 10.5281/zenodo.10570138
title: E2P4 COVID19 Trial Cytokine profile data

description: E2P4 treated COVID-19 donor serum samples, cytokine protein expression data set. 

Proteins were measured using the Olink® Target 48 Cytokine panel* (Olink Proteomics AB, Uppsala, Sweden) according to the manufacturer's instructions. The Proximity Extension Assay (PEA) technology used for the Olink protocol has been well described,49 and enables 45 analytes to be analyzed simultaneously, using 1 µL of each sample. In brief, pairs of oligonucleotide-labeled antibody probes bind to their targeted protein, and if the two probes are brought in close proximity the oligonucleotides will hybridize in a pair-wise manner. The addition of a DNA polymerase leads to a proximity-dependent DNA polymerization event, generating a unique PCR target sequence. The resulting DNA sequence is subsequently detected and quantified using a microfluidic real-time PCR instrument (Biomark HD, Fluidigm). Data is then quality controlled and normalized using an internal extension control and calibrators, to adjust for intra- and inter-run variation. The final assay read-out is presented in pg/ml using a 4-Pl fit for absolute quantification. All assay validation data (detection limits, intra- and inter-assay precision data, etc.) are available on manufacturer's website (www.olink.com).
DOI: 10.5281/zenodo.10570136
title: Tabla 5. Digital and information literacy in basic education teachers
DOI: 10.5281/zenodo.10570137
title: Tabla 5. Digital and information literacy in basic education teachers
DOI: 10.5281/zenodo.10570189
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nellie Violet Haynie, http://www.wikidata.org/entity/Q21515605. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21515605
DOI: 10.5281/zenodo.10570190
title: Natural history specimens collected and/or identified and deposited.

description: Natural history specimen data collected and/or identified by Nellie Violet Haynie, http://www.wikidata.org/entity/Q21515605. Claims or attributions were made on Bionomia, https://bionomia.net using specimen data from the Global Biodiversity Information Facility, https://gbif.org.
description: http://www.wikidata.org/entity/Q21515605
DOI: 10.5281/zenodo.10246443
title: QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration

description: The summary statistics (nominal p-values, beta and standard error) for all significant variant-CpG pair mQTLs, all significant variant-gene pair eQTLs, and all significant CpG-gene pair eQTMs identified in retina in the Advani et al., https://www.researchsquare.com/article/rs-3011096/v1.

README: The chr positions are in genome build 38, and the chr positions in the variant IDs, e.g., 'rs201942322:649192:A:T' are in build hg19 (b37).
DOI: 10.5281/zenodo.10246444
title: QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration

description: The summary statistics (nominal p-values, beta and standard error) for all significant variant-CpG pair mQTLs, all significant variant-gene pair eQTLs, and all significant CpG-gene pair eQTMs identified in the Advani et al., https://www.researchsquare.com/article/rs-3011096/v1.
DOI: 10.5281/zenodo.10569726
title: QTL mapping of human retina DNA methylation identifies 87 gene-epigenome interactions in age-related macular degeneration

description: The summary statistics (nominal p-values, beta and standard error) for all significant variant-CpG pair mQTLs, all significant variant-gene pair eQTLs, and all significant CpG-gene pair eQTMs identified in retina in the Advani et al., https://www.researchsquare.com/article/rs-3011096/v1.

README: The chr positions are in genome build 38, and the chr positions in the variant IDs, e.g., 'rs201942322:649192:A:T' are in build hg19 (b37).
DOI: 10.24431/rw1k8dz
title: Estuary fish communities along a glacial gradient in the Gulf of Alaska, AK NSF EPSCoR Fire and Ice, 2019–2022

description: Climate change is accelerating glacial melt in Gulf of Alaska watersheds and concomitant changes in runoff will affect coastal and estuarine habitats and ecological communities. This dataset consists of fish community data from beach seine collections in Southeast and Southcentral Alaskan estuaries. Southeast Alaska sites were located in Gastineau Channel and Lynn Canal, near Juneau, and Southcentral Alaska sites were in Kachemak Bay, near Homer. Watersheds adjacent to estuary sites varied in their degree of glacierization (i.e., contemporary ice cover), ranging from 0% to 60% glacier cover. Estuary sites were sampled between April and October, yearly from 2019 to 2022. The dataset consists of fish abundance by species, fish length measurements, and sampling information (e.g., fishing effort, locality, sampling date). These data were collected as part of the Alaska EPSCoR Phase 5 “Fire and Ice” Program by the EPSCoR Coastal Margins team.
---
This metadata record was created by Anne Beaudreau, Associate Professor, University of Alaska Fairbanks, in Oct–Nov 2020. Following Beaudreau's departure from UAF in December 2020, it is to be maintained by Brenda Konar or designee from the EPSCoR Coastal Margins team. Beaudreau may be contacted with questions regarding the metadata record or Juneau 2019-2020 data at annebeau@uw.edu.
DOI: 10.5517/ccdc.csd.cc2bzmkj
title: CCDC 2174388: Experimental Crystal Structure Determination

description: Related Article: Dinesh Gopichand Thakur, Nileshkumar B. Rathod, Sachinkumar D. Patel, Dharmik M. Patel, Raj N. Patel, Mahesh A. Sonawane, Subhash Chandra Ghosh|2024|J.Org.Chem.|89|1058|doi:10.1021/acs.joc.3c02139
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d6ns2
title: CCDC 2210944: Experimental Crystal Structure Determination

description: Related Article: Man Xu, Ping Yin, Siping Pang|2024|J.Org.Chem.|89|986|doi:10.1021/acs.joc.3c02053
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2d9y3s
title: CCDC 2214085: Experimental Crystal Structure Determination

description: Related Article: Man Xu, Ping Yin, Siping Pang|2024|J.Org.Chem.|89|986|doi:10.1021/acs.joc.3c02053
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34740/kaggle/dsv/7482410
title: Interstellar Travel Customer Satisfaction Analysis