cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8799266.v1
title: Automobile injury trends in the contemporary fleet: Belted occupants in frontal collisions

description: <b>Objective:</b> As vehicle safety technologies and evaluation procedures advance, it is pertinent to periodically evaluate injury trends to identify continuing and emerging priorities for intervention. This study examined detailed injury distributions and injury risk trends in belted occupants in frontal automobile collisions (10 o’clock to 2 o’clock) using NASS-CDS (1998–2015). <b>Methods:</b> Injury distributions were examined by occupant age and vehicle model year (stratified at pre- and post-2009). Logistic regression models were developed to examine the effects of various factors on injury risk (by body region), controlling for delta-V, sex, age, height, body mass index (BMI), vehicle model year (again stratified at 2009). <b>Results:</b> Among other observations, these analyses indicate that newer model year vehicles (model year [MY] 2009 and later) carry less risk of Abbreviated Injury Scale (AIS) 2+ and AIS 3+ injury compared to older model year vehicles, with odds ratios of 0.69 (AIS 2+) and 0.45 (AIS 3+). The largest reductions in risk between newer model year vehicles and older model year vehicles occur in the lower extremities and in the risk of skull fracture. There is no statistically significant change in risk of AIS 3+ rib fracture or sternum injury between model year categories. Females are at greater risk of AIS 2+ and AIS 3+ injury compared to males, with increased risk across most injury types. <b>Conclusions:</b> For belted occupants in frontal collisions, substantial reductions in injury risk have been realized in many body regions in recent years. Risk reduction in the thorax has lagged other body regions, resulting in increasing prevalence among skeletal injuries in newer model year vehicles (especially in the elderly). Injuries also remain common in the arm and hand/wrist for all age ranges studied. These results provide insight into where advances in the field have made gains in occupant protection and what injury types remain to be addressed.
DOI: 10.6084/m9.figshare.8799227
title: Bagel results

description: Data folder containing BAGEL (essentiality) results.
DOI: 10.6084/m9.figshare.8799239.v1
title: Spatial analysis of mortality rate of pedestrian accidents in Iran during 2012–2013

description: <b>Objectives:</b> Considering the high mortality rate of pedestrians in traffic accidents in Iran, the present study aimed to determine the high-risk and low-risk areas of accidents resulting in pedestrian deaths and the spatial analysis of their mortality rates. <b>Methods:</b> This cross-sectional study included 4,371 deceased pedestrians reported by the Legal Medicine Organization in Iran from March 2012 to March 2013. For spatial analysis, the collected data were entered into ArcGIS software version 10.2 and a spatial map of the mortality rate was drawn according to the distribution of data in the provinces. Using this software, high-risk and low-risk areas were identified by calculating the spatial autocorrelation of the data. The Moran’s index of road accident patterns was surveyed and high-risk and low-risk points were identified using the local Getis index. <b>Results:</b> The age-standardized incidence rate was 6.8 per 100,000. After analyzing the data using ArcGIS software, the local Moran’s index showed a cluster pattern with a high mortality rate in 3 provinces of Mazandaran, Gilan, and Qazvin. In identifying high-risk and low-risk points, the local Getis index showed 3 hot spots with a confidence interval of 99% in Qom, Qazvin, and Mazandaran and 5 hot spots with a 95% confidence interval in Markazi, Tehran, Zanjan, Gilan, and Golestan provinces. <b>Conclusions:</b> According to the cluster pattern of accidents in the 3 provinces and the presence of hot spots in 9 provinces, it is necessary to identify factors that increase the risk of death in the study provinces in order to reduce the mortality rate among pedestrians due to traffic accidents. Therefore, to reduce the pedestrian mortality rate, especially in high-risk provinces, some studies need to be conducted to determine the risk factors in pedestrian mortality.
DOI: 10.6084/m9.figshare.8799227.v1
title: Bagel results

description: Data folder containing BAGEL (essentiality) results.
DOI: 10.6084/m9.figshare.8799215
title: Readcounts

description: Data folder containing raw guide read counts.
DOI: 10.6084/m9.figshare.8799215.v2
title: Readcounts

description: Data folder containing raw guide read counts.
DOI: 10.6084/m9.figshare.8799215.v1
title: Readcounts

description: Data folder containing raw guide read counts.
DOI: 10.6084/m9.figshare.8799131
title: Plasma type I IFN protein concentrations in human tuberculosis

description: IFNa, IFNB, IFN activity concentrations and ISG scores from the blood of active and latent TB patients, as well as positive (influenza infection) and negative controls (healthy donors).<br>
DOI: 10.6084/m9.figshare.8799083
title: Breeman et al Ms Data & Figures

description: Prism GraphPad files for Figures 1 & 2
DOI: 10.6084/m9.figshare.8799161.v1
title: SW_FISH_INTERMITTENCY

description: Files provide community presence/absence data and a factor designating reach level flow intermittence (perennial or intermittent) for the Verde River and Little Colorado River basins. <br>See the readme file (readme_SW_FISH_INTERMITTENCY.txt) for additional information.
DOI: 10.6084/m9.figshare.8798855
title: Source Data.zip

description: Source data for "Network structure of neural systems supporting cascading dynamics predicts stimulus propagation and recovery" (Ju et al., 2019)
DOI: 10.6084/m9.figshare.8798855.v1
title: Source Data.zip

description: Source data for "Network structure of neural systems supporting cascading dynamics predicts stimulus propagation and recovery" (Ju et al., 2019)
DOI: 10.6084/m9.figshare.8799083.v1
title: Fig 1

description: Prism GraphPad file for Figure 1
DOI: 10.6084/m9.figshare.8798720
title: Experimental neutron scattering data of horse and human RBC

description: Experimental USANS, SANS and QENS data of horse and human red blood cells in isotonic D2O buffer, after addition of the ionophore monensin, and after incubation with monensin.
DOI: 10.6084/m9.figshare.8798753
title: CO-ARBitrator Rev2 Incremental Nucleotide Fasta

description: This nucleotide fasta file contains COI records that were added to the collection since the original release. <br>Defline format is &gt;Accession|binomial|taxonomy<br>Example:&gt;HQ551992|Sciapus_tener|K_Metazoa__P_Arthropoda__C_Insecta__O_Diptera__F_Dolichopodidae__G_Sciapus__S_tener<br>The single characters in the taxonomy stand for ranks. In the example, the kingdom (K) is Metazoa, the phylum (P) is Arthropoda, and so on. Intermediate ranks are not included, but the full taxonomy string (from the record's "organism" field in GenBank) is available in the tsv file CO-ARBitrator_2.0.tsv,<br>
DOI: 10.6084/m9.figshare.8798717
title: QENS_HorseRBC.zip

description: Experimental QENS data of horse red blood cells in isotonic D2O buffer, after addition of the ionophore valinomycin, and vanadium data defining instrumental resolution function.
DOI: 10.6084/m9.figshare.8798717.v1
title: QENS_HorseRBC.zip

description: Experimental QENS data of horse red blood cells in isotonic D2O buffer, after addition of the ionophore valinomycin, and vanadium data defining instrumental resolution function.
DOI: 10.6084/m9.figshare.8798753.v2
title: CO-ARBitrator Rev2 Incremental Nucleotide Fasta

description: This nucleotide fasta file contains COI records that were added to the collection since the original release. <br>Defline format is &gt;Accession|binomial|taxonomy<br>Example:&gt;HQ551992|Sciapus_tener|K_Metazoa__P_Arthropoda__C_Insecta__O_Diptera__F_Dolichopodidae__G_Sciapus__S_tener<br>The single characters in the taxonomy stand for ranks. In the example, the kingdom (K) is Metazoa, the phylum (P) is Arthropoda, and so on. Intermediate ranks are not included, but the full taxonomy string (from the record's "organism" field in GenBank) is available in the tsv file CO-ARBitrator_2.0.tsv,<br>
DOI: 10.6084/m9.figshare.8798753.v1
title: CO-ARBitrator Rev2 Nucleotide Fasta

description: This nucleotide fasta file contains COI records that were added to the collection since the original release. <br>Defline format is &gt;Accession|binomial|taxonomy<br>Example:&gt;HQ551992|Sciapus_tener|K_Metazoa__P_Arthropoda__C_Insecta__O_Diptera__F_Dolichopodidae__G_Sciapus__S_tener<br>The single characters in the taxonomy stand for ranks. In the example, the kingdom (K) is Metazoa, the phylum (P) is Arthropoda, and so on. Intermediate ranks are not included, but the full taxonomy string (from the record's "organism" field in GenBank) is available in the tsv file CO-ARBitrator_2.0.tsv,<br>
DOI: 10.6084/m9.figshare.8798720.v1
title: QENS_HumanRBC.zip

description: Experimental QENS data of human red blood cells in isotonic D2O buffer, after addition of the ionophore monensin, after incubation with monensin at 308 K, as lysate, and vanadium data defining instrumental resolution function.
DOI: 10.6084/m9.figshare.8798720.v3
title: Experimental neutron scattering data of horse and human RBC

description: Experimental USANS, SANS and QENS data of horse and human red blood cells in isotonic D2O buffer, after addition of the ionophore monensin, and after incubation with monensin.
DOI: 10.6084/m9.figshare.8798720.v2
title: Experimental neutron scattering data of horse and human RBC

description: Experimental USANS, SANS and QENS data of horse and human red blood cells in isotonic D2O buffer, after addition of the ionophore monensin, and after incubation with monensin.
DOI: 10.24376/rd.sgul.8798609
title: Supplementary data for "The effects of diabetes on tuberculosis treatment outcomes: an updated systematic review and meta-analysis"

description: Supplementary data for publication: The effects of diabetes on tuberculosis treatment outcomes: an updated systematic review and meta-analysis.
DOI: 10.6084/m9.figshare.8798600
title: Supplementary Material for: Internet-Based Intervention for Posttraumatic Stress Disorder: Using Remote Imagery Rehearsal Therapy to Treat Nightmares

description: Medicine
DOI: 10.24376/rd.sgul.8798609.v1
title: Supplementary data for "The effects of diabetes on tuberculosis treatment outcomes: an updated systematic review and meta-analysis"

description: Supplementary data for publication: The effects of diabetes on tuberculosis treatment outcomes: an updated systematic review and meta-analysis.
DOI: 10.6084/m9.figshare.8798600.v1
title: Supplementary Material for: Internet-Based Intervention for Posttraumatic Stress Disorder: Using Remote Imagery Rehearsal Therapy to Treat Nightmares

description: Medicine
DOI: 10.6084/m9.figshare.8798498
title: YC02_QC data

description: The transcriptomes of a male individual and a female individual were sequenced from seven different taxonomical groups: <i>Gammarus fossarum A, G. fossarum B, G. fossarum C</i>, <i>Gammarus wautieri</i>, <i>Gammarus pulex</i>, <i>Echinogammarus berilloni</i> and <i>Echinogammarus marinus</i>. Control quality of reads was performed by FastQC version V0.11.2.
DOI: 10.6084/m9.figshare.8798498.v1
title: YC02_QC data

description: The transcriptomes of a male individual and a female individual were sequenced from seven different taxonomical groups: <i>Gammarus fossarum A, G. fossarum B, G. fossarum C</i>, <i>Gammarus wautieri</i>, <i>Gammarus pulex</i>, <i>Echinogammarus berilloni</i> and <i>Echinogammarus marinus</i>. Control quality of reads was performed by FastQC version V0.11.2.
DOI: 10.6084/m9.figshare.8798477
title: Rare earth element geochemistry of bone beds from the Lower Cretaceous Zhonggou Formation of Gansu Province, China

description: <i>Auroraceratops rugosus</i> from the Lower Cretaceous Zhonggou Formation, Gansu Province, China is characterized by exquisite external preservation of articulated, often ventrolaterally curled remains found in discrete locations several to hundreds of meters apart. This has prompted a hypothesis that the remains are the result of recurring die-offs and rapid burial in burrows. To test this, rare earth element (REE) concentrations were measured from <i>Auroraceratops</i> bones and surrounding red-bed mudstones via inductively coupled plasma mass spectrometry. Petrographic analysis was conducted to understand the preservation of the bones and surrounding rock. Results suggest early postmortem deterioration of the bone by bacteria and/or fungal hyphae (Wedl type I tunneling and mineralized remains) and mineralization of hyphae in acidic/reducing conditions. This is supported by Ce-enriched, filamentous ferromanganese oxide coatings on the external and internal bone cavities. Deterioration/dissolution of the bone must have ceased for a period of time, and we suggest that desiccation of the carcasses halted the deterioration of bone. A second mineralization phase occurred as remains came into contact with vadose water, as evident by precipitation of micritic calcite, recrystallization of filamentous apatite in the bone matrix, and bone REE patterns indicating equilibration with alkaline/oxidized fluids. Despite poor histologic preservation, the well-articulated, curled-up positioning of the remains, and similarity to remains from the Upper Cretaceous Nemegt Formation of Mongolia, suggests that the <i>Auroraceratops</i> beds are the result of death in burrows in a seasonally arid environment. The similar taphonomic mode to remains from Nemegt may represent a common preservation mode for faunas from extensional basin deposits. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Suarez, C. A., E. M. Morschhauser, M. B. Suarez, H. You, D. Li, and P. Dodson. 2019. Rare earth element geochemistry of bone beds from the Lower Cretaceous Zhonggou Formation of Gansu Province, China; pp. 22–35 in Hailu You, Peter Dodson, and Eric Morschhauser (eds.), <i>Auroraceratops rugosus</i> (Ornithischia, Ceratopsia) from the Early Cretaceous of northwestern Gansu Province, China. Society of Vertebrate Paleontology Memoir 18. Journal of Vertebrate Paleontology 38(Supplement). DOI: 10.1080/02724634.2017.1400441.
DOI: 10.6084/m9.figshare.8798480
title: Phylogenetic history of <i>Auroraceratops rugosus</i> (Ceratopsia: Ornithischia) from the Lower Cretaceous of Gansu Province, China

description: Basal neoceratopsians are a relatively diverse group of small- to medium-sized herbivorous dinosaurs from the Early to Late Cretaceous of Asia and North America. Although known for over a century, this group has only relatively recently received intense independent study, tied to the rapid increase in known diversity since 1997. <i>Auroraceratops rugosus</i> is one of these recently discovered species and is one of the best-known basal neoceratopsians, being represented by over 80 specimens, and is also the most completely represented neoceratopsian from the Early Cretaceous. A phylogenetic analysis focusing on non-ceratopsid ceratopsians examines the phylogenetic context of <i>Auroraceratops</i>. The analysis is based on a new matrix of 41 taxa and 257 characters. The results recover an <i>Auroraceratops</i>-<i>Aquilops-</i>ZPAL MgD-I/156 clade within basal Neoceratopsia that is sister to a clade composed of <i>Asiaceratops</i>, <i>Yamaceratops</i>, <i>Mosaiceratops</i>, and the larger clades Leptoceratopsidae and Coronosauria. This phylogeny recovers a monophyletic Coronosauria, Leptoceratopsidae, and Protoceratopsidae. <i>Helioceratops</i> is recovered as sister to the rest of Leptoceratopsidae, <i>Ischioceratops</i> is recovered nested within Leptoceratopsidae, and the enigmatic genus <i>Mosaiceratops</i> is recovered as a basal neoceratopsian, sister to <i>Yamaceratops</i>. <i>Yinlong,</i> and <i>Hualianceratops</i> are recovered in an expanded Chaoyangsauridae, and the genus <i>Psittacosaurus</i> is recovered as the earliest diverging lineage in Ceratopsia. <i>Ajkaceratops</i>, the only European ceratopsian, is robustly recovered as sister to the rest of Ceratopsoidea. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Morschhauser, E. M., H. You, D. Li, and P. Dodson. 2019. Phylogenetic history of <i>Auroraceratops rugosus</i> (Ceratopsia: Ornithischia) from the Lower Cretaceous of Gansu Province, China; pp. 117–147 in Hailu You, Peter Dodson, and Eric Morschhauser (eds.), <i>Auroraceratops rugosus</i> (Ornithischia, Ceratopsia) from the Early Cretaceous of northwestern Gansu Province, China. Society of Vertebrate Paleontology Memoir 18. Journal of Vertebrate Paleontology 38(Supplement). DOI: 10.1080/02724634.2017.1509866.
DOI: 10.6084/m9.figshare.8798477.v1
title: Rare earth element geochemistry of bone beds from the Lower Cretaceous Zhonggou Formation of Gansu Province, China

description: <i>Auroraceratops rugosus</i> from the Lower Cretaceous Zhonggou Formation, Gansu Province, China is characterized by exquisite external preservation of articulated, often ventrolaterally curled remains found in discrete locations several to hundreds of meters apart. This has prompted a hypothesis that the remains are the result of recurring die-offs and rapid burial in burrows. To test this, rare earth element (REE) concentrations were measured from <i>Auroraceratops</i> bones and surrounding red-bed mudstones via inductively coupled plasma mass spectrometry. Petrographic analysis was conducted to understand the preservation of the bones and surrounding rock. Results suggest early postmortem deterioration of the bone by bacteria and/or fungal hyphae (Wedl type I tunneling and mineralized remains) and mineralization of hyphae in acidic/reducing conditions. This is supported by Ce-enriched, filamentous ferromanganese oxide coatings on the external and internal bone cavities. Deterioration/dissolution of the bone must have ceased for a period of time, and we suggest that desiccation of the carcasses halted the deterioration of bone. A second mineralization phase occurred as remains came into contact with vadose water, as evident by precipitation of micritic calcite, recrystallization of filamentous apatite in the bone matrix, and bone REE patterns indicating equilibration with alkaline/oxidized fluids. Despite poor histologic preservation, the well-articulated, curled-up positioning of the remains, and similarity to remains from the Upper Cretaceous Nemegt Formation of Mongolia, suggests that the <i>Auroraceratops</i> beds are the result of death in burrows in a seasonally arid environment. The similar taphonomic mode to remains from Nemegt may represent a common preservation mode for faunas from extensional basin deposits. SUPPLEMENTAL DATA—Supplemental materials are available for this article for free at www.tandfonline.com/UJVP Citation for this article: Suarez, C. A., E. M. Morschhauser, M. B. Suarez, H. You, D. Li, and P. Dodson. 2019. Rare earth element geochemistry of bone beds from the Lower Cretaceous Zhonggou Formation of Gansu Province, China; pp. 22–35 in Hailu You, Peter Dodson, and Eric Morschhauser (eds.), <i>Auroraceratops rugosus</i> (Ornithischia, Ceratopsia) from the Early Cretaceous of northwestern Gansu Province, China. Society of Vertebrate Paleontology Memoir 18. Journal of Vertebrate Paleontology 38(Supplement). DOI: 10.1080/02724634.2017.1400441.
DOI: 10.6084/m9.figshare.8798471
title: YC02_Transcriptome translated ORFs

description: We sequenced the transcriptomes of a male individual and a female individual for seven different taxonomical groups: Gammarus fossarum A, G. fossarum B, G. fossarum C, Gammarus wautieri, Gammarus pulex, Echinogammarus berilloni and Echinogammarus marinus. Translations of coding sequence regions were produced for each transcriptome by Transdecoder from stop to stop codons, analysing only top strand with 500 top longest ORFs used for training, and retaining 600 base pair ORFs and only proteins with a minimum length of 50 amino acids.
DOI: 10.6084/m9.figshare.8798447
title: Gammarid transcript annotations

description: We sequenced the transcriptomes of a male individual and a female individual for seven different taxonomical groups: <i>Gammarus fossarum A, G. fossarum B, G. fossarum C</i>, <i>Gammarus wautieri</i>, <i>Gammarus pulex</i>, <i>Echinogammarus berilloni</i> and <i>Echinogammarus marinus</i>. For each sample the transcripts were annotated using the Trinotate annotation pipeline43. Swissprot database was used as main database and Amphipods proteins referenced on Uniref were used as custom database. Blastx and Blastp were used for the similarity search step with an e-value cutoff set at 1e-2. Blast results were then used for generate the annotation report with the same e-value cutoff.
DOI: 10.6084/m9.figshare.8798423
title: YC02_COI sequences and phylogenetic tree

description: COI Sequences and Phylogenetic tree
DOI: 10.6084/m9.figshare.8798432
title: YC02_Transrate results

description: Raw results from Transrate
DOI: 10.6084/m9.figshare.8798432.v1
title: YC02_Transrate results

description: Raw results from Transrate
DOI: 10.6084/m9.figshare.8798423.v1
title: YC02_COI sequences and phylogenetic tree

description: COI Sequences and Phylogenetic tree
DOI: 10.6084/m9.figshare.8798378
title: Proteomic signatures of neuroinflammation in Alzheimer’s disease, multiple sclerosis and ischemic stroke

description: <b>Introduction</b>: Inflammation is integral in the neuropathology of both chronic and acute neurological disorders. Knowing the inflammatory profile is important for clarification of disease mechanisms, diagnostic purposes, and ultimately treatment options. <b>Areas covered</b>: A systematic review was performed on literature from PubMed using the search terms ‘Alzheimer’s disease’ (AD) or ”multiple sclerosis” (MS) or ”ischemic stroke” and ‘proteomics’. Inflammatory proteins were assessed in blood, cerebrospinal fluid (CSF), and post-mortem brain tissue. Regulated inflammatory proteins across compartments and disorders mainly consisted of innate immune proteins, acute phase proteins and oxidative stress response proteins. In addition, immunoglobulin chains were signature proteins of MS, reflecting additional involvement of adaptive immunity. The Chitinase 3-like protein 1 was increased in ten original articles on MS and in three on AD supporting its implication in these diseases. Furthermore, CNS/CSF AD inflammatory proteins were matched to a CNS myeloid cell proteome implicating Alpha-2-Macroglobulin and Annexin A1 in AD pathogenesis. <b>Expert opinion</b>: Proteomics is an excellent technique for profiling inflammatory proteins in tissues and cells, but still targeted approaches are required for profiling of very low abundance proteins and peptides. Knowing the inflammatory signature of brain tissue, CSF, blood, and CNS myeloid cells holds the potential to point to novel mechanistic aspects of neurological diseases.
DOI: 10.6084/m9.figshare.8798357
title: Multiple sequence alignment used for phylogenetic reconstruction of the TPXL gene family in Arabidopsis.

description: Multiple sequence alignment used for phylogenetic reconstruction of the TPXL gene family in Arabidopsis. The alignment is in phylip format. Accession numbers of sequences are included in the sequence names.