cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24148155.v1
title: <b>Comparative Analysis of Psychological Well-being and Emotional Education in Graduate Students</b>

description: It is to analyze the existing relationship between emotional education and psychological well-being in graduate students, through a comparative analysis in the different study programs offered at this university.
DOI: 10.6084/m9.figshare.28760399.v1
title: FS-SDP Dataset

description: This dataset is the base for the article <i>FS-SDP: A few-shot learning approach using siamese networks for </i><i>interpretable software defect prediction</i>
DOI: 10.6084/m9.figshare.3564666.v1
title: Appendix A. Description of analysis and a nonmetric multidimensional scaling plot of fish community composition for each 2008 sampling event color coded by habitat type sampled.

description: Description of analysis and a nonmetric multidimensional scaling plot of fish community composition for each 2008 sampling event color coded by habitat type sampled.
DOI: 10.6084/m9.figshare.8035754.v1
title: Patient 14 MRI

description: CTs and MRIs were both acquired under radiotherapy immobilization protocols with patients in the treatment position.<br>CT scans were acquired on one of four machine models (LightSpeed RT16, GE Medical Systems, Waukesha, WI, USA; Brilliance 64 or Brilliance Big Bore, Philips Healthcare, Cambridge, MA, USA; SOMATOM Definition Edge, Siemens, Washington D.C., USA) using x-ray tube currents between 208 – 434 mA at 120 kVp. All scans have slice thicknesses of either 2.5 or 3 mm, with 2.5 or 3 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in diameters between 500 – 600 mm. <br>MRI scans were acquired in one of two machine models (Discovery MR750, GE Medical Systems, Waukesha, WI, USA; Ingenia, Philips Healthcare, Cambridge, MA, USA) in 3 Tesla magnetic fields with echo times between 97.72 – 101.82 milliseconds. All scans have slice thicknesses of 2.5 mm, with 2.5 or 4 mm of space between slices. Sections are displayed in 512 x 512 pixel matrices and were reconstructed in 256 mm diameters.
DOI: 10.6084/m9.figshare.5785479.v2
title: Source code and datasets for "FastNet: Fast and Accurate Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data"

description: Source code and datasets for "FastNet: Fast and Accurate Inference of Phylogenetic Networks Using Large-Scale Genomic Sequence Data".
DOI: 10.6084/m9.figshare.27026701.v1
title: Wetland restoration is effective but not sufficient to compensate SOC losses

description: A global dataset of SOC in restored, degraded and natural wetlands (1996–2023)
DOI: 10.6084/m9.figshare.27169116.v1
title: AP Science

description: Seq Data
DOI: 10.6084/m9.figshare.10299299.v1
title: Calculations about interchangeability of the order of lenses and glenses with a common nodal point

description: Mathematica notebook containing two calculations: one that shows that the order of two (ideal) lenses with a common nodal point can be interchanged without affecting the mapping between object and image space, the other about changing the order of two glenses (generalised ideal lenses) with a common nodal points which does not come to a conclusive result.
DOI: 10.6084/m9.figshare.28517267.v1
title: PASI Score

description: PASI score
DOI: 10.6084/m9.figshare.14937939.v1
title: Supplementary Material for: Molecular mechanisms associated with antidepressant treatment on Major Depression

description: Medicine
DOI: 10.6084/m9.figshare.19968863.v1
title: Anatomical and morphometric study of goat middle ear ossicles (Capra aegagrus hircus)

description: ABSTRACT The social and economic roles of goat farming in Northeastern Brazil, allied to the fact that the use of goat middle ear ossicles for research and human ear surgery training has not yet been proposed, justify the study of their applicability as an experimental model. The middle ears of 19 goats (Capra aegagrus hircus) from the bone collection of the Laboratory and Didactic Anatomy Museum of Domestic and Wild Animals of the Federal University of Vale do São Francisco (UNIVASF) were dissected. The malleus, incus, and stapes were evaluated regarding their macroscopic morphology and biometry (length, width, and height). Ossicle morphology was similar to sheep, human, and bovine morphology. The malleus was 1.3 times heavier and 2.2 times longer than the incus, and 9.0 times heavier and 3.7 times longer than the stapes. The size relationship was positive between the stapes and the malleus and negative between the stapes and the incus. It is concluded that the middle ear size and the anatomical similarities with human ossicles make goats a useful model for experimental scientific studies, reconstructive surgery practice of the ossicular chain, and human ear surgery training.
DOI: 10.6084/m9.figshare.28484624.v2
title: Native plant diversity provides resistance to invasion by an alien species in natural and experimental settings

description: Native diversity resist invasion in nature and field
DOI: 10.6084/m9.figshare.4643854.v1
title: dmLT_Fig. 3. Recovery of dmLT after incubation at pH 3–7

description: Double mutant heat labile (dmLT) adjuvant is being proposed for oral vaccine formulation. Given the loss of dmLT observed with the HCl and simulated gastric fluid in Table 2 this experiment was conducted to determine the pH stability of dmLT. This work was conducted in two separate experiments. In the first experiment dmLT was diluted in pH buffers ranging from pH 3-7 and incubated at 4˚C and 37˚C. Samples were taken at the specified time points, neutralized and measured by ELISA. After determining dmLT was stable between the pH range of 4-5 a second experiment was conducted to look at finer pH intervals between 4 and 5. Again dmLT was diluted in pH buffers (4, 4.2, 4.4, 4.6, 4.8, 5), incubated at 4˚C and 37˚C. Samples were taken at the appropriate time points, neutralized and measured by dmLT ELISA.
DOI: 10.6084/m9.figshare.19499663.v1
title: patches and local annotations, slide 072, zoom 248x248 um2

description: patches and local annotations: data for slide with ID of the last 3 characters of the file name: local annotations in csv format and a folder with patches at zoom level indicated at the 6th character of the file name
DOI: 10.6084/m9.figshare.26104741.v1
title: Supplementary Material for: Tumor-intrinsic perinuclear LOXL2: Prognostic relevance and relationship with YAP1 activation status in oral squamous cell carcinoma

description: Introduction. Lysyl Oxidase-Like 2 (LOXL2) expression and function is frequently altered in different cancers, but scarcely explored in oral squamous cell carcinoma (OSCC). This prompted us to investigate the clinical relevance of LOXL2 expression pattern in OSCC and also a possible crosstalk with Hippo/YAP1 pathway signaling. 
Methods. Immunohistochemical analysis of LOXL2 protein expression was performed in 158 OSCC patient samples, together with Yes-associated protein 1 (YAP1) activation status. Correlations with clinicopathological parameters and patient survival were assessed. 
Results. Tumor cell-intrinsic LOXL2 expression showed two distinct expression patterns: diffuse cytoplasmic staining (64.6%), and heterogeneous perinuclear staining (35.4%). Remarkably, perinuclear LOXL2 staining was significantly associated with lymph node metastasis, advanced clinical stage and perineural invasion. Moreover, patients harboring tumors with perinuclear LOXL2 expression exhibited significantly poorer disease-specific survival (DSS) rates. Strikingly, we also found that perinuclear LOXL2 positivity gradually increased in relation to YAP1 activation, and patients harboring tumors with concomitant perinuclear LOXL2 and fully active YAP1 exhibited the worst DSS. Multivariate Cox analysis further revealed combined perinuclear LOXL2 and fully active YAP1 as a significant independent predictor of poor DSS. 
Conclusion. Tumor-intrinsic perinuclear LOXL2 emerges as a clinically and biologically relevant feature associated with advanced disease, tumor aggressiveness, and poor prognosis in OSCC. Moreover, this study unprecedentedly uncovers a functional relationship between perinuclear LOXL2 and YAP1 activation with major prognostic implications. Notably, combined perinuclear LOXL2 and fully active YAP1 was revealed as independent predictor of poor prognosis. These findings encourage targeting oncogenic LOXL2 functions for personalized treatment regimens.
DOI: 10.6084/m9.figshare.19389500.v1
title: Supplementary Material for: Anaemia Is Associated with an Increased Risk of Fractures, a Systematic Review, and Meta-Analysis

description: <b><i>Background:</i></b> Anaemia and osteoporotic fractures are both major health problems among older adults worldwide. <b><i>Objectives:</i></b> Previous studies suggest that anaemia may be associated with elevated fracture risk among older adults; however, the exact relationship between them is unknown. We aimed to investigate the association between anaemia and fracture risk. <b><i>Methods:</i></b> A comprehensive literature search was performed in four medical databases. We included articles that were published from inception to February 18, 2021. Odds ratios (ORs), hazard ratios (HRs) with 95% confidence intervals (CIs), and original raw incidences from studies comparing fracture rates in anaemic versus non-anaemic patients were extracted and pooled with the random-effects model. <i>I</i><sup>2</sup> test was used to assess heterogeneity. Risk of bias assessment was performed using the Quality of Prognostic Studies tool. PROSPERO: CRD42021241109. <b><i>Results:</i></b> A total of 13 studies were identified; 8 of them were included in the quantitative synthesis. Anaemia was found to be a risk factor for fracture compared to non-anaemia. Anaemia increased hip fracture risk in both older men (HR = 1.71; CI: 1.46–2.00, <i>p</i>&lt; 0.001, <i>I</i><sup>2</sup> = 83.2%) and women (HR = 1.31; CI: 1.13–1.52, <i>p</i>&lt; 0.001), but the fracture risk was more increased among men. There was also an increased chance of hip fracture in the presence of anaemia in populations, including both older men and women (OR = 1.64; CI: 1.35–2.01, <i>p</i>&lt; 0.001, <i>I</i><sup>2</sup> = 61.1%). Anaemia was also associated with increased vertebral (HR = 1.21; CI: 1.04–1.40, <i>p</i> = 0.012) and all-type (HR = 1.49; CI: 1.19–1.86, <i>p</i>&lt; 0.001) fracture risk in older men. <b><i>Conclusion:</i></b> Our results suggest that there is a significant relationship between anaemia and fracture risk in older adults. This association is stronger among older men than women and differs in the different types of fractures.
DOI: 10.6084/m9.figshare.20555022.v1
title: Supplementary Material for: Inhaled Corticosteroids and Mycobacterial Infection in Patients with Chronic Airway Diseases: A Systematic Review and Meta-Analysis

description: <b><i>Background:</i></b> Inhaled corticosteroids (ICSs) have been widely used in chronic airway diseases, such as asthma, chronic obstructive pulmonary disease (COPD), and bronchiectasis. However, whether ICS use causes mycobacterial infection is uncertain. Some conclusions of published studies were inconsistent. <b><i>Objective:</i></b> We aimed to investigate the association between the use of ICSs and mycobacterial infections in patients with chronic airway diseases. <b><i>Methods:</i></b> This review was registered on PROSPERO (CRD42021284607). We focused on examining the association between ICS use and mycobacterial infection (nontuberculous mycobacterial [NTM] infection as well as tuberculosis [TB]). We searched PubMed (MEDLINE), Sciencenet, Cochrane, and EMBASE databases for studies up to 2021 to retrieve articles. The enrollment conditions included gender, enrollment diagnosis and ICS use in chronic airway disease patients, and so on. Preclinical studies, review articles, editorials, reviews, conference abstracts, and book chapters were excluded. Methodologically, the study was assessed using the Newcastle Ottawa Scale, and Rev-man5 was used for statistical analysis. <b><i>Results:</i></b> Ten studies (including 4 NTM and 6 TB articles) with 517,556 patients met the inclusion criteria and were included in this meta-analysis. From the NTM pooled analyses, ICS use was associated with increased odds of NTM infection in patients with chronic airway diseases (odds ratio [OR] = 3.93, 95% confidence interval [CI] 2.12–7.27), subgroup analysis showed that high-dose ICS use (OR = 2.27, 95% CI 2.08–2.48) and fluticasone use (OR = 2.42, 95% CI 2.23–2.63) were associated with increased odds of NTM infection risk in patients with chronic respiratory diseases. The TB pooled analyses showed a significant association between ICS use and risk of TB infection in patients with chronic respiratory diseases (OR = 2.01, 95% CI 1.23–3.29). Subgroup analysis showed that in chronic respiratory diseases, ICS use increased odds of TB infection in high-dose ICS use (OR = 1.70, 95% CI 1.56–1.86) and in COPD patients (OR = 1.45, 95% CI 1.29–1.63). <b><i>Conclusion:</i></b> Our meta-analysis indicated that ICS use may increase the odds of mycobacterial infection in chronic respiratory disease patients, and this conclusion is more applicable to patients with high dose of ICS or fluticasone in NTM infection subgroups. In addition, high-dose ICS use may have higher risk of TB infection in patients with chronic respiratory diseases, especially COPD. Therefore, we should be vigilant about the application of ICS use in chronic respiratory diseases to avoid infection.
DOI: 10.25381/cput.24476326.v2
title: An analysis of data governance implications on big data

description: <b>Ethical Clearance Reference Number : 207066922/2022/25</b>This study seeks to analyze the data governance implications on big data, the probable challenges and prospects that big data adoption may present in various organizations. The data contains the list of participants, years of experience and their respective roles within various organizations. The data also contains interview transcripts for all the semi-structured interviews that were conducted by the researcher.
DOI: 10.6084/m9.figshare.14627052.v1
title: ANPP.xlsx

description: Proper estimation of the herb layer annual net primary production (ANPP) can help to appreciate the role of this layer in carbon assimilation and nutrient cycling. Simple methods of ANPP estimation often understate its value. More accurate methods take into account biomass increments of individual species but are more laborious. We conducted our study in an oak-hornbeam forest (site area 12 ha) dominated by beech in NW Poland during two growing seasons (2010 and 2011). We collected herb layer biomass from 7 to 10 square frames (0.6×0.6 m). We collected plant biomass every week in April and May and every two weeks for the rest of the growing season. We compared six methods of calculating ANPP. The highest current year standing biomass (1<sup>st</sup> method of ANPP calculation) was obtained on 15<sup>th</sup> May 2010 – 37.8 g m<sup>-2</sup> and 7<sup>th</sup> May 2011 – 41.0 g m<sup>-2</sup>. The highest values of ANPP were obtained by the 6<sup>th</sup> method based on the sum of the highest products of shoot biomass and density for individual species: 74.3 g m<sup>‑2</sup> year<sup>-1</sup> in 2010 and 94.0 g m<sup>-2</sup> year<sup>‑1</sup> in 2011. The spring ephemeral <i>Anemone nemorosa</i> had the highest share of ANPP with 50% of the total ANPP. Two summer-greens, <i>Galeobdolon luteum</i> and <i>Galium odoratum</i>, each had a ca. 10% share of ANPP. The best results of ANPP calculation resulted from laborious tracking of dynamics of biomass and density of individual shoots.
DOI: 10.6084/m9.figshare.5129755.v1
title: Supplementary Material for: A CpG-SNP Located within the <b><i>ARPC3</i></b> Gene Promoter Is Associated with Hypertriglyceridemia in Severely Obese Patients

description: <b><i>Aims:</i></b> To test the potential association of cytosine-phosphate-guanine dinucleotides (CpG)-single-nucleotide polymorphisms (SNPs) located within actin-related protein 2/3 complex subunit 3 (<i>ARPC3</i>), a gene recently linked to adipogenesis and lipid accumulation, with metabolic syndrome (MetS) features in severely obese patients. <b><i>Methods:</i></b> Prioritized SNPs within the <i>ARPC3</i> locus were genotyped and tested for associations with MetS features in a cohort of 1,749 obese patients with and without MetS. Association testing with CpG methylation levels was performed in a methylation sub-cohort of 16 obese men. <b><i>Results:</i></b> A significant association was found between the CpG-SNP rs3759384 (C&gt;T) and plasma triglyceride (TG) levels (false discovery rate-corrected p = 3.5 × 10<sup>-2</sup>), with 0.6% of the phenotypic variance explained by the CpG-SNP, and with TT homozygotes showing the highest plasma TG levels (1.89 mmol/l). The carriers of the rs3759384 T allele also showed a significant decrease in methylation levels of the <i>ARPC3</i> promoter-associated CpG site cg10738648 in both visceral adipose tissue and blood. <i>ARPC3</i> expression levels showed a strong correlation with plasma TG levels (r = 0.70; p = 0.02). <b><i>Conclusions:</i></b> The increased plasma TG levels found in homozygous rs3759384 T allele carriers argue for a relevant role of this CpG-SNP in lipid management among obese individuals, which may be driven by an epigenetic-mediated mechanism.
DOI: 10.6084/m9.figshare.23269034.v1
title: BAG Amsterdam

description: BAG (Basisregistratie Adressen en Gebouwen) data over Amsterdam region. Converted to WGS84 coordinates.
DOI: 10.6084/m9.figshare.28768673.v1
title: Agostinelli_Dissertation_Aim3

description: this is the dataset for a publication by Agostinelli et. al. 2025 in JFMK.
DOI: 10.6084/m9.figshare.15911940.v1
title: Locations of mapped craters on Bennu

description: Central coordinates for all mapped craters on Bennu larger than 10 m in diameter.
DOI: 10.6084/m9.figshare.3515753.v1
title: Appendix A. Metrics of model performance.

description: Metrics of model performance.
DOI: 10.6084/m9.figshare.14331092.v1
title: Physical Activity Behaviors and Mental Well-Being Under COVID-19 Lockdown: A Cross-Sectional Multination Study

description: <b>Background: </b>COVID-19 lockdowns have reduced opportunities for physical activity (PA) and encouraged more sedentary lifestyles. A concomitant of sedentariness is compromised mental health. We investigated the effects of COVID-19 lockdown on PA, sedentary behavior, and mental health across four Western nations (USA, UK, France, and Australia).<b>Methods:</b><i> </i>An online survey was administered in the second quarter of 2020 (<i>N </i>= 2,541). We measured planned and unplanned dimensions of PA using the Brunel Lifestyle Physical Activity Questionnaire and mental health using the 12-item General Health Questionnaire. Steps per day were recorded only from participants who used an electronic device for this purpose, and sedentary behavior was reported in hours per day (sitting and screen time). <b>Results:</b> In the USA and Australia samples, there was a significant decline in planned PA from pre- to during lockdown. Among young adults, Australians exhibited the lowest planned PA scores, while in middle-aged groups, the UK recorded the highest. Young adults exhibited the largest reduction in unplanned PA. Across nations, there was a reduction of ~2000 steps per day. Large increases in sedentary behavior emerged during lockdown, which were most acute in young adults. Lockdown was associated with a decline in mental health that was more pronounced in women.<b>Conclusions:</b><i> </i>The findings illustrate the deleterious effects of lockdown on PA, sedentary behavior, and mental health across four Western nations. Australian young and lower middle-aged adults appeared to fare particularly badly in terms of planned PA. The reduction in steps per day is equivalent to the non-expenditure of ~100 kcal. Declines in mental health show how harmful lockdowns can be for women in particular.
DOI: 10.6084/m9.figshare.24158637.v1
title: Cluster_59_linelist

description: Widespread human-to-human transmission of the severe acute respiratory syndrome coronavirus two (SARS-CoV-2) stems from a strong affinity for the cellular receptor angiotensin converting enzyme two (ACE2). We investigate the relationship between a patient’s nasopharyngeal <i>ACE2</i> transcription and secondary transmission within a series of concurrent hospital associated SARS-CoV-2 outbreaks in British Columbia, Canada.<i>Methods</i>: Epidemiological case data from the outbreak investigations was merged with public health laboratory records and viral lineage calls, from whole genome sequencing, to reconstruct the concurrent outbreaks using infection tracing transmission network analysis. <i>ACE2</i> transcription and RNA viral load were measured by quantitative real-time polymerase chain reaction. The transmission network was resolved to calculate the number of potential secondary cases. Bivariate and multivariable analyses using Poisson and Negative Binomial regression models was performed to estimate the association between <i>ACE2</i> transcription the number of SARS-CoV-2 secondary cases.<br><br>Data Dictionary:<br><b>Unit_of_Transmission:</b> Hospital Unit where a infection prevention and control epidemiologist identified a possible transmission event.<br><b>Unit_Acquisition:</b> Hospital Unit where a infection prevention and control epidemiologist identified a possible acquisition event.<br><b>Collection Date (yyyy-mm-dd, UTC):</b> date at which a nasopharyngeal specimen was collected from a symptomatic case for SARS-CoV-2 molecular diagnostic testing using qRT-PCR.<br><b>log_GE: </b> Logarithmic base ten genome-equivalents per millilitre of SARS-CoV-2 detected by envelope gene target using qRT-PCR.<br><b>Fold.Change.ace3: </b> Relative gene expression data of <i>ACE2</i> expression (full-length/ transmembrane transcript variant).<br><b>Linearge: </b>SARS-CoV-2 viral lineage as classified by the PANGOLIN tool (Version 1.15.1), viral genome alignments are available on GISAID. <br>
DOI: 10.6084/m9.figshare.7176116.v1
title: Annotation results of hog deer genome

description: We provide the annotation results of repeated sequences, gene structure, and functional prediction for the de novo assembled genome of hog deer.
DOI: 10.6084/m9.figshare.7345715.v1
title: Additional File 1:

description: Table S1. Phenotypic and passport data of the 159 accessions of the Vietnamese rice landrace collection in 2014 and 2015. The indicated phenotypic data correspond to the average values for each trait per accession per year. Values relating to length are in cm. (XLS 157 kb)
DOI: 10.6084/m9.figshare.10060085.v1
title: Body height and testosterone change

description: A positive relationship between body height and testosterone response to physical exercise<br> Marta Kowal<sup>1</sup>, Piotr Sorokowski<sup>1</sup>*, Agnieszka Żelaźniewicz<sup>2</sup>, Judyta Nowak<sup>2</sup>, Sylwester Orzechowski<sup>1</sup>, Grzegorz Żurek<sup>3</sup>, Alina Żurek<sup>1</sup>. <sup>1</sup>Institute of Psychology, University of Wrocław, Wrocław, Poland.<br> <sup>2</sup>Department of Human Biology, University of Wrocław, Wrocław, Poland.<br> <sup>3</sup>Wrocław Sports University, Wrocław, Poland.<b></b> <b>*Correspondence: <br> </b>Piotr Sorokowski<br> sorokowskipiotr@yahoo.co.uk
DOI: 10.6084/m9.figshare.1057762.v1
title: Nose poke device using 3d printed parts and Arduino

description: This is a small project that contains all the necessary parts to establish a nose poke device to train rats