cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10073153
title: Genome Data Uncover Conservation Status, Historical Relatedness and Candidate Genes under Selection in Chinese Indigenous Pigs in the Taihu Lake Region

description: Chinese indigenous pig breeds in the Taihu Lake region (TH) of Eastern China are well-recognized for their exceptional prolificacy. These breeds including Meishan (MS), Erhualian (EHL), Jiaxing Black (JXB), Fengjing (FJ), Shawutou (SWT), Mi (MI) and Hongdenglong (HDL). At present, these breeds are facing a great threaten of population decline, lineage admixture and inbreeding depression since Western commercial pigs have dominated Chinese pig industry. To provide better conservation schemes and identify candidate genes under selection for these breeds, we explored genome-wide SNP markers to unravel genetic variability and relatedness, population structure, historical admixture and genomic signatures of selection of 440 pigs representing the most comprehensive lineages of these breeds in TH in a context of 1228 pig from 45 Eurasian breeds. We showed that these breeds were more closely related among each other as compared to other Eurasian breeds, defining one of the main ancestral lineages of Chinese indigenous pigs. These breeds can be divided into two regional subgroups, one including JXB and FJ pigs, and the other comprising EHL, MI, HDL, MS and SWT pigs. In additional, HDL pigs were highly inbred, whereas EHL and MS pigs had more abundant genetic diversity. This is attributable to multiple conservation populations of the two breeds. Moreover, we identified a list of candidate genes for body size and prolificacy at the loci putatively under selection. our results would benefit the sustainable conservation of these valuable breeds and improve our understanding of the genetic mechanisms of body size and fecundity in pigs.
DOI: 10.6084/m9.figshare.10073165.v1
title: Data for "Water permeability evolution with faulting..." Kimura et al. JGR article

description: This is data associated to the publication "Water permeability evolution with faulting for unconsolidated turbidite sand in a gas-hydrate reservoir in the eastern Nankai Trough area of Japan".
DOI: 10.6084/m9.figshare.10073099
title: Larval habitat diversity and mosquito species distribution along the Coastal Kenya

description: The data is from a across sectional survey of mosquito larval breeding habitats, habitat productivity and mosquito species diversity and distribution in Mombasa Island and its environs during 2014 dengue outbreak in Mombasa, Haller Park, Bamburi, Gede and Arabuko sokoke forest November-Decembeer 2016
DOI: 10.6084/m9.figshare.10073018
title: METADATAS1

description: This file contains detailed instructions on how to execute the files provided in the folder “DataS1”.
DOI: 10.6084/m9.figshare.10073099.v1
title: Mosquito Larval habitats diversity, distribution, characterization and specie diversity.xlsx

description: The data is from a across sectional survey of mosquito larval breeding habitats, habitat productivity and mosquito species diversity and distribution in Mombasa Island and its environs during 2014 dengue outbreak in Mombasa, Haller Park, Bamburi, Gede and Arabuko sokoke forest November-Decembeer 2016
DOI: 10.6084/m9.figshare.10073012
title: Demographic questionnaire and EPDS in English

description: This is the questionnaire used in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". The questionnaire consists of two part including demographic information and the Edinburgh Postnatal Depression Scale (EPDS). This file is English version of the questionnaire.<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1
DOI: 10.6084/m9.figshare.10073009
title: Demographic questionnaire and EPDS in Thai

description: This is the questionnaire used in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". The questionnaire consists of two part including demographic information and the Edinburgh Postnatal Depression Scale (EPDS). This file is a Thai translated version of the questionnaire<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1
DOI: 10.6084/m9.figshare.10073018.v1
title: METADATAS1

description: This file contains detailed instructions on how to execute the files provided in the folder “DataS1”.
DOI: 10.6084/m9.figshare.10073009.v1
title: Demographic questionnaire and EPDS in Thai

description: This is the questionnaire used in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". The questionnaire consists of two part including demographic information and the Edinburgh Postnatal Depression Scale (EPDS). This file is a Thai translated version of the questionnaire<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1
DOI: 10.6084/m9.figshare.10072874
title: Molecular confirmation and morphological reassessment of <i>Udotea geppiorum</i> (Bryopsidales, Chlorophyta) with ecological observations of mesophotic meadows in the Main Hawaiian Islands

description: <i>Udotea geppiorum</i> is reported to form meadows in deep-water, soft sediment habitats in the Main Hawaiian Islands. The identification of the species, initially published as <i>U. argentea</i> in the archipelago, is revised and confirmed based on morphological assessment and comparative DNA sequencing with western Pacific specimens. <i>Udotea geppiorum</i> is fully corticated and newly shown to display discrete concentric segments arranged in a ‘tongue and groove’ manner, which are connected by medullary siphons running along the entire segment interface. <i>Udotea geppiorum</i> is phylogenetically nested among a cluster of <i>Udotea</i> spp. recently circumscribed within <i>Udotea sensu stricto</i>. This cluster of species is separate from the remainder of the family Udoteaceae, which includes several genera and <i>Udotea</i> spp. <i>sensu lato</i> that lack or exhibit incomplete cortication. Based on field observations conducted in O‘ahu and Maui, <i>U. geppiorum</i> can be found from 20 m to &gt; 90 m depth with a peak in abundance at mesophotic depths of 60–85 m, where it forms extensive meadows that support associated diversity.
DOI: 10.6084/m9.figshare.10072874.v1
title: Molecular confirmation and morphological reassessment of <i>Udotea geppiorum</i> (Bryopsidales, Chlorophyta) with ecological observations of mesophotic meadows in the Main Hawaiian Islands

description: <i>Udotea geppiorum</i> is reported to form meadows in deep-water, soft sediment habitats in the Main Hawaiian Islands. The identification of the species, initially published as <i>U. argentea</i> in the archipelago, is revised and confirmed based on morphological assessment and comparative DNA sequencing with western Pacific specimens. <i>Udotea geppiorum</i> is fully corticated and newly shown to display discrete concentric segments arranged in a ‘tongue and groove’ manner, which are connected by medullary siphons running along the entire segment interface. <i>Udotea geppiorum</i> is phylogenetically nested among a cluster of <i>Udotea</i> spp. recently circumscribed within <i>Udotea sensu stricto</i>. This cluster of species is separate from the remainder of the family Udoteaceae, which includes several genera and <i>Udotea</i> spp. <i>sensu lato</i> that lack or exhibit incomplete cortication. Based on field observations conducted in O‘ahu and Maui, <i>U. geppiorum</i> can be found from 20 m to &gt; 90 m depth with a peak in abundance at mesophotic depths of 60–85 m, where it forms extensive meadows that support associated diversity.
DOI: 10.6084/m9.figshare.10072898
title: Raw data - factors associated with depression

description: This raw data is a result of the questionnaire completed by 230 participants (pregnant adolescents) in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". <br><br>All terms, initials, and numbers presented in the raw data are explained in "Raw data dictionary" file.<br>The published article can be found on http://dx.doi.org/10.12688/f1000research.21007.1
DOI: 10.6084/m9.figshare.10072850
title: Characterization of <i>Martensia</i> (Delesseriaceae; Rhodophyta) from shallow and mesophotic habitats in the Hawaiian Islands: description of four new species

description: Fifty-six specimens of the red algal genus <i>Martensia</i> from the Main and Northwestern Hawaiian Islands, representing both shallow (36 specimens from 0–20 m depth) and mesophotic habitats (20 specimens from 62–93 m depth), were collected and characterized using morphological and molecular analyses. Phylogenetic analyses of the <i>rbc</i>L gene resolved five distinct clades of <i>Martensia</i> from the Hawaiian Islands, of which none could be attributed to the two previously used taxonomic names for this flora (<i>M. fragilis</i> Harvey and <i>M. flabelliformis</i> Harvey <i>ex</i> J.Agardh). Analyses of the COI barcoding region were consistent with <i>rbc</i>L trends, although fewer specimens amplified and sequenced for this marker. Four <i>rbc</i>L clades (lineages 1–4) were distinct from each other and from other described species of <i>Martensia</i> based on both phylogenetic position and morphological characters, and are here described as new species: <i>Martensia abbottiae</i> A.R.Sherwood & S.-M. Lin sp. nov., <i>Martensia hawaiiensis</i> A.R.Sherwood & S.-M. Lin sp. nov., <i>Martensia tsudae</i> A.R.Sherwood & S.-M. Lin sp. nov., and <i>Martensia lauhiekoeloa</i> A.R.Sherwood & S.-M. Lin sp. nov. Lineage 5 is attributable to <i>M. albida</i> Y.Lee. All five species in the Hawaiian flora occur in mesophotic habitats, while <i>M. hawaiiensis, M. tsudae</i>, and <i>M. albida</i> also inhabit shallow waters of the Main Hawaiian Islands. This study provides additional support for the degree of uncharacterized biodiversity from mesophotic depths in the Hawaiian Archipelago.
DOI: 10.6084/m9.figshare.10072898.v1
title: Raw data - factors associated with depression

description: This raw data is a result of the questionnaire completed by 230 participants (pregnant adolescents) in the study of "predictive statistical model for the factor associated with prenatal depression among pregnant adolescents in Maha sarakham province, Thailand". <br>
DOI: 10.6084/m9.figshare.10072850.v1
title: Characterization of <i>Martensia</i> (Delesseriaceae; Rhodophyta) from shallow and mesophotic habitats in the Hawaiian Islands: description of four new species

description: Fifty-six specimens of the red algal genus <i>Martensia</i> from the Main and Northwestern Hawaiian Islands, representing both shallow (36 specimens from 0–20 m depth) and mesophotic habitats (20 specimens from 62–93 m depth), were collected and characterized using morphological and molecular analyses. Phylogenetic analyses of the <i>rbc</i>L gene resolved five distinct clades of <i>Martensia</i> from the Hawaiian Islands, of which none could be attributed to the two previously used taxonomic names for this flora (<i>M. fragilis</i> Harvey and <i>M. flabelliformis</i> Harvey <i>ex</i> J.Agardh). Analyses of the COI barcoding region were consistent with <i>rbc</i>L trends, although fewer specimens amplified and sequenced for this marker. Four <i>rbc</i>L clades (lineages 1–4) were distinct from each other and from other described species of <i>Martensia</i> based on both phylogenetic position and morphological characters, and are here described as new species: <i>Martensia abbottiae</i> A.R.Sherwood & S.-M. Lin sp. nov., <i>Martensia hawaiiensis</i> A.R.Sherwood & S.-M. Lin sp. nov., <i>Martensia tsudae</i> A.R.Sherwood & S.-M. Lin sp. nov., and <i>Martensia lauhiekoeloa</i> A.R.Sherwood & S.-M. Lin sp. nov. Lineage 5 is attributable to <i>M. albida</i> Y.Lee. All five species in the Hawaiian flora occur in mesophotic habitats, while <i>M. hawaiiensis, M. tsudae</i>, and <i>M. albida</i> also inhabit shallow waters of the Main Hawaiian Islands. This study provides additional support for the degree of uncharacterized biodiversity from mesophotic depths in the Hawaiian Archipelago.
DOI: 10.6084/m9.figshare.10072793
title: Brasil_analiticobd.dta

description: Official Brazilian 2010 census data.
DOI: 10.6084/m9.figshare.10072793.v1
title: Brasil_analiticobd.dta

description: Official Brazilian 2010 census data.
DOI: 10.6084/m9.figshare.10072637
title: Maternal Care Data

description: Datasets for 1) all latency to retrieve observations, 2) lifetime reproductive success ~ latency to retrieve, 3) growth rate of pups ~ latency to retrieve, 4) survival ~ latency to retrieve
DOI: 10.6084/m9.figshare.10072628
title: Data for GWG-EG.xlsx

description: Data for gender wage gap/economic growth.
DOI: 10.6084/m9.figshare.10072637.v1
title: Maternal Care Data

description: Datasets for 1) all latency to retrieve observations, 2) lifetime reproductive success ~ latency to retrieve, 3) growth rate of pups ~ latency to retrieve, 4) survival ~ latency to retrieve
DOI: 10.6084/m9.figshare.10072418
title: Climate variability and fishing in the Amazon: the case of the black prochilodus (Prochilodus nigricans Agassiz, 1829)

description: The environmental and fisheries data that support the findings of the study
DOI: 10.6084/m9.figshare.10072412
title: Australian gay and lesbian postcodes (IJGIS)

description: This project uses data on same-gendered households (via the 2016 Australian Census) and cohabitation rates (via behavioural population surveys) to estimate the total number and prevalence of gay men and lesbian women living across Australia and in each postcode. The data and code for generating relevant outputs and analyses are contained here.<br><b>(i) Stock datasets</b> [Files: remoteness2012.dta; postcode_clusters.dta] This item contains files required to organize the Australian Census data: (i) the 'remoteness' classifications per the Australian Statistical Geography Standard (Australian Bureau of Statistics, 2011), and (ii) clustering of those postcodes with base total populations of less than 200 people. The clustering process was undertaken manually by reviewing postcodes in that bracket and combining them with neighboring postcodes within the same jurisdictions and remoteness classification until the threshold of 200 was met. Preference was given for clustering postcodes that shared the largest geographic border and/or with the smallest population sizes.<br><br><b>(ii) Underlying datasets </b>[Files: pop_sex_0-9.xlsx; pop_sex_10-19.xlsx; pop_sex_18.xlsx; pop_sex_19.xlsx; pop_sex_20-24.xlsx; pop_sex_25-29.xlsx; pop_sex_all.xlsx; ss_couples_all.xlsx]This item contains tables created by and extracted from the Australian Bureau of Statistics 'TableBuilder' platform, which allows access to and organization of aggregate data from the 2016 Australian Census. The tables exist in two groups (i) total number of Census participants, stratified by postcode, age group and gender, and (ii) total number of same-gendered households, stratified by postcode and gender.<br><br><b>(iii) Organizational code</b> [File: generate dataset and analysis.do]This file contains the code (Stata, version 15.0) to organize the 'underlying datasets' and combine them with information collated from behavioral survey data. To account for remoteness classification via the Australian Statistical Geography Standard, it merges by postcode on a separate 'stock dataset' (remoteness2012). To account for clustering of postcodes with small overall populations, it merges by postcode on a separate 'stock dataset' (postcode_clusters). The code additionally produces outcomes of descriptive analyses and relevant tables, and generates a final dataset of, by-postcode, population sizes and prevalences.<br><b>(iv) Final dataset </b>[File: Appendix B - dataset.xlsx]This final dataset contains organized, merged and interpreted outcomes, presented as variables of, by-postcode, the estimated absolute number and prevalence of gay men and lesbian women in Australia. A data dictionary is included.<br><br>
DOI: 10.6084/m9.figshare.10072382
title: 2h Soybean Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of soybean over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072355
title: 2g Corn Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of Corn over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072382.v1
title: 4b Soybean Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of soybean over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072412.v1
title: Australian gay and lesbian postcodes (IJGIS)

description: This project uses data on same-gendered households (via the 2016 Australian Census) and cohabitation rates (via behavioural population surveys) to estimate the total number and prevalence of gay men and lesbian women living across Australia and in each postcode. The data and code for generating relevant outputs and analyses are contained here.<br><b>(i) Stock datasets</b> [Files: remoteness2012.dta; postcode_clusters.dta] This item contains files required to organize the Australian Census data: (i) the 'remoteness' classifications per the Australian Statistical Geography Standard (Australian Bureau of Statistics, 2011), and (ii) clustering of those postcodes with base total populations of less than 200 people. The clustering process was undertaken manually by reviewing postcodes in that bracket and combining them with neighboring postcodes within the same jurisdictions and remoteness classification until the threshold of 200 was met. Preference was given for clustering postcodes that shared the largest geographic border and/or with the smallest population sizes.<br><br><b>(ii) Underlying datasets </b>[Files: pop_sex_0-9.xlsx; pop_sex_10-19.xlsx; pop_sex_18.xlsx; pop_sex_19.xlsx; pop_sex_20-24.xlsx; pop_sex_25-29.xlsx; pop_sex_all.xlsx; ss_couples_all.xlsx]This item contains tables created by and extracted from the Australian Bureau of Statistics 'TableBuilder' platform, which allows access to and organization of aggregate data from the 2016 Australian Census. The tables exist in two groups (i) total number of Census participants, stratified by postcode, age group and gender, and (ii) total number of same-gendered households, stratified by postcode and gender.<br><br><b>(iii) Organizational code</b> [File: generate dataset and analysis.do]This file contains the code (Stata, version 15.0) to organize the 'underlying datasets' and combine them with information collated from behavioral survey data. To account for remoteness classification via the Australian Statistical Geography Standard, it merges by postcode on a separate 'stock dataset' (remoteness2012). To account for clustering of postcodes with small overall populations, it merges by postcode on a separate 'stock dataset' (postcode_clusters). The code additionally produces outcomes of descriptive analyses and relevant tables, and generates a final dataset of, by-postcode, population sizes and prevalences.<br><b>(iv) Final dataset </b>[File: Appendix B - dataset.xlsx]This final dataset contains organized, merged and interpreted outcomes, presented as variables of, by-postcode, the estimated absolute number and prevalence of gay men and lesbian women in Australia. A data dictionary is included.<br><br>
DOI: 10.6084/m9.figshare.10072355.v1
title: 4a Corn Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of Corn over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072382.v2
title: 1h Soybean Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of soybean over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072382.v4
title: 2h Soybean Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of soybean over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072112
title: MOESM2 of An integrated health delivery platform, targeting soil-transmitted helminths (STH) and canine mediated human rabies, results in cost savings and increased breadth of treatment for STH in remote communities in Tanzania

description: Additional file 2. A list of target villages, the number of people of different age ranges that received deworming treatment and the number of dogs that were vaccinated against rabies.
DOI: 10.6084/m9.figshare.10072355.v2
title: 1g Corn Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of Corn over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072112.v1
title: MOESM2 of An integrated health delivery platform, targeting soil-transmitted helminths (STH) and canine mediated human rabies, results in cost savings and increased breadth of treatment for STH in remote communities in Tanzania

description: Additional file 2. A list of target villages, the number of people of different age ranges that received deworming treatment and the number of dogs that were vaccinated against rabies.
DOI: 10.6084/m9.figshare.10072382.v3
title: 2h Soybean Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of soybean over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072355.v3
title: 2g Corn Price Model.csv

description: This dataset is a combination of data from the USDA National Statistics Service and Economic Research Service. It has been processed to provide a basis for modelling the price of Corn over the period 1990-2017.
DOI: 10.6084/m9.figshare.10072070
title: MOESM2 of Reported MÄ ori consumer experiences of health systems and programs in qualitative research: a systematic review with meta-synthesis

description: Additional file 2. Dataset used for analysis.
DOI: 10.6084/m9.figshare.10072070.v1
title: MOESM2 of Reported MÄ ori consumer experiences of health systems and programs in qualitative research: a systematic review with meta-synthesis

description: Additional file 2. Dataset used for analysis.
DOI: 10.6084/m9.figshare.10072049
title: MOESM8 of Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)

description: Additional file 8: Table S5. The primers, quantitative real-time PCR (qPCR) data, and Fragments Per Kilobase of transcript per Million mapped reads (FPKM) values for twelve unigenes chosen for verification.
DOI: 10.6084/m9.figshare.10072043
title: MOESM7 of Dynamic transcriptome sequencing and analysis during early development in the bighead carp (Hypophthalmichthys nobilis)

description: Additional file 7: Table S4. The top GO (gene ontology; biology process) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment terms for unigenes from different expression profiles during the early development in H. nobilis.