cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.pswqq7
title: Occurrence Download

description: A dataset containing 5630 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paspalum notatum Flüggé)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 5630 records from 327 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012686-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.244pwc
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.9919 -21.4718,35.9648 -21.4413,35.9648 -24.1383,36.0558 -23.8719,35.9919 -21.4718))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012687-250525065834625/datasets/export for details.
DOI: 10.15468/dl.cb6tmr
title: Occurrence Download

description: A dataset containing 8510 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is one of (France, Spain, Portugal)",
 "TaxonKey is Ludwigia peploides (Kunth) P.H.Raven",
 "Year 2000-2025"
 ]
}

 The dataset includes 8510 records from 343 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012688-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jxtjh3
title: Occurrence Download

description: A dataset containing 693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melaleuca quinquenervia (Cav.) S.T.Blake",
 "Country is New Caledonia"
 ]
}

 The dataset includes 693 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012689-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3rfbau
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leucheria purpurea (Vahl) Hook. & Arn.",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012690-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t45gpt
title: Occurrence Download

description: A dataset containing 603 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paspalum quadrifarium Lam.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 603 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012691-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pk3d6p
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9648 10.8496,35.9648 10.8496,35.9648 1.8496,44.9648 1.8496,44.9648 10.8496))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012692-250525065834625/datasets/export for details.
DOI: 10.15468/dl.bdjdef
title: Occurrence Download

description: A dataset containing 176 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leymus chinensis (Trin.) Tzvelev",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 176 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012693-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rkqxbh
title: Occurrence Download

description: A dataset containing 8469 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paspalum scrobiculatum L.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 8469 records from 246 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012694-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bc684q
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((44.9096 1.1987,44.9648 1.2321,44.9648 1.8496,35.9648 1.8496,35.9648 -7.1504,40.3029 -7.1504,40.4263 -6.8134,40.0733 -6.4249,39.9535 -5.9102,40.3587 -5.2718,40.3515 -4.7573,40.0702 -4.4392,40.3811 -3.7186,40.7402 -3.0348,41.8195 -2.1723,43.8399 0.2902,44.9096 1.1987))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012695-250525065834625/datasets/export for details.
DOI: 10.15468/dl.gpycjb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ruellia simplex C.Wright",
 "Country is Cayman Islands"
 ]
}

 The dataset includes 17 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012696-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xph766
title: Occurrence Download

description: A dataset containing 389 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Leymus secalinus (Georgi) Tzvelev",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 389 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012697-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3g2hv
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Argentina sphyraena Linnaeus, 1758",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((36.2225 24.1647,35.9648 24.4806,35.9648 19.8496,37.7519 19.8496,37.7005 20.2556,37.7935 21.209,37.3891 21.7756,37.3588 22.2459,36.8499 22.7968,36.6611 23.2461,36.1736 23.4033,36.31 23.7463,36.2225 24.1647))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012699-250525065834625/datasets/export for details.
DOI: 10.15468/dl.fqpf7p
title: Occurrence Download

description: A dataset containing 9497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Paspalum urvillei Steud.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 9497 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012698-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4ta9q2
title: Occurrence Download

description: A dataset containing 36448 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Streptomyces Waksman & Henrici, 1943"
 ]
}

 The dataset includes 36448 records from 425 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016348-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kc5637
title: Occurrence Download

description: A dataset containing 281737 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is Tamaulipas",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 281737 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016329-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8e5y3y
title: Occurrence Download

description: A dataset containing 534 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Chile, Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Month is one of (October, November, December, January)",
 "OccurrenceStatus is Present",
 "TaxonKey is Buteo ventralis Gould, 1837"
 ]
}

 The dataset includes 534 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016349-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5z8whe
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Thamnomanes saturninus (Pelzeln, 1868))",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016350-250525065834625/datasets/export for details.
DOI: 10.15468/dl.hpk75y
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Holtbyrnia macrops Maul, 1957",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((40.877 -22.4563,40.8172 -22.0642,40.48 -21.825,40.0801 -21.8881,39.8467 -22.172,39.8612 -22.5315,40.2159 -22.8442,40.6757 -22.7649,40.877 -22.4563))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010211-250525065834625/datasets/export for details.
DOI: 10.26030/zyys-b526
title: Effects of photon irradiation in the presence and absence of hindlimb unloading on the behavioral performance and metabolic pathways in the plasma of Fischer rats

description: The space environment astronauts experience during space missions consists of multiple environmental challenges, including microgravity. In this study, we assessed the behavioral and cognitive performances of male Fisher rats 2 months after sham irradiation or total body irradiation with photons in the absence or presence of simulated microgravity. We analyzed the plasma collected 9 months after sham irradiation or total body irradiation for distinct alterations in metabolic pathways and to determine whether changes to metabolic measures were associated with specific behavioral and cognitive measures. A total of 344 male Fischer rats were irradiated with photons (6 MeV; 3, 8, or 10 Gy) in the absence or presence of simulated weightlessness achieved using hindlimb unloading (HU). To identify potential plasma biomarkers of photon radiation exposure or the HU condition for behavioral or cognitive performance, we performed regression analyses. The behavioral effects of HU on activity levels in an open field, measures of anxiety in an elevated plus maze, and anhedonia in the MandM consumption test were more pronounced than those of photon irradiation. Phenylalanine, tyrosine, and tryptophan metabolism, and phenylalanine metabolism and biosynthesis showed very strong pathway changes, following photon irradiation and HU in animals irradiated with 3 Gy. Here, 29 out of 101 plasma metabolites were associated with 1 out of 13 behavioral measures. In the absence of HU, 22 metabolites were related to behavioral and cognitive measures. In HU animals that were sham-irradiated or irradiated with 8 Gy, one metabolite was related to behavioral and cognitive measures. In HU animals irradiated with 3 Gy, six metabolites were related to behavioral and cognitive measures. These data suggest that it will be possible to develop stable plasma biomarkers of behavioral and cognitive performance, following environmental challenges like HU and radiation exposure. This study derives results from the Open Field, Novel Object Recognition and Anhedonia, and Elevated Plus Maze behavior assays.
DOI: 10.18739/a2dz0335j
title: Seasonal soil active layer measurements from a Circumpolar Active Layer Monitoring (CALM) project site 'Imnavait Creek MAT' (U11 C), Alaska North Slope, United States (Alaska), 1995-2023

description: This site is registered with the Circumpolar Active Layer Monitoring (CALM) program. It is one among a network of sites that represent a coordinated effort to standardize the collection and access to thaw measurements in representative undisturbed permafrost landscapes. This dataset contains long-term spatial thaw depth observations using mechanical probing on dates indicated by file column headers. To ensure relative consistency within the record, end-of-season measurement dates are within the same Julian calendar week during the height of the thaw season (mid-August to mid-September). It is important to note that the date of maximum annual thaw, interpreted as the active layer thickness, can vary from year to year and between sites.
DOI: 10.6084/m9.figshare.29994442
title: Tick borne pathogens in ticks from a farm in Slovakia

description: The file contains DNA sequences from tick borne pathogens (<i>Borrelia burgdorferi </i>s.l., <i>Anaplasma phagocytophilum</i>, <i>Babesia venatorum</i>, <i>Babesia microti</i>, <i>Babesia capreoli, Rickettsia helvetica, Rickettsia monacensis </i>and<i> Rickettsia raoultii </i>identified in <i>Ixodes ricinus</i> and <i>Dermacentor reticulatus</i> ticks collected from vegetation and animals in an agrotouristic farm in western Slovakia.
DOI: 10.6084/m9.figshare.29994442.v1
title: Tick borne pathogens in ticks from a farm in Slovakia

description: The file contains DNA sequences from tick borne pathogens (<i>Borrelia burgdorferi </i>s.l., <i>Anaplasma phagocytophilum</i>, <i>Babesia venatorum</i>, <i>Babesia microti</i>, <i>Babesia capreoli, Rickettsia helvetica, Rickettsia monacensis </i>and<i> Rickettsia raoultii </i>identified in <i>Ixodes ricinus</i> and <i>Dermacentor reticulatus</i> ticks collected from vegetation and animals in an agrotouristic farm in western Slovakia.
DOI: 10.15468/dl.p5v8zd
title: Occurrence Download

description: A dataset containing 51857 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Fritillaria meleagris"
 ]
}

 The dataset includes 51857 records from 591 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0049626-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15283054
title: TCRvdb
DOI: 10.5281/zenodo.15283055
title: TCRvdb
DOI: 10.15468/dl.ychctz
title: Occurrence Download

description: A dataset containing 156 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Syzygium aqueum (Burm.fil.) Alston",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Occurrence evidence)"
 ]
}

 The dataset includes 156 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001729-250424135625364/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.zw3r228cr
title: Identification of upper thermal thresholds during development in the endangered Nechako white sturgeon with management implications for a regulated river

description: Climate change-induced warming effects are already evident in river
 ecosystems and projected increases in temperature will continue to amplify
 stress on fish communities. Additionally, many rivers globally are
 impacted by dams which have many negative effects on fishes by altering
 flow, blocking fish passage, and changing sediment composition. However,
 in some systems, dams present an opportunity to manage river temperature
 through regulated releases of cooler water. For example, there is a
 government mandate for Kenney dam operators in the Nechako River, BC
 Canada, to maintain river temperature below 20°C in July and August to
 protect migrating sockeye salmon (Oncorhynchus nerka). However, there is
 another endangered fish species inhabiting the same river, Nechako white
 sturgeon (Acipenser transmontanus), and it is unclear if these current
 temperature regulations, or timing of the regulations, are suitable for
 spawning and developing sturgeon. In this study, we aimed to identify
 upper thermal thresholds in white sturgeon embryos and larvae to
 investigate if exposure to current river temperatures are playing a role
 in recruitment failure. We incubated embryos and yolk-sac larvae in three
 environmentally relevant temperatures (14°, 18°C, and 21°C) throughout
 development to identify thermal thresholds across different levels of
 biological organization. Our results demonstrate upper thermal thresholds
 at 21°C across physiological measurements in embryo and yolk-sac larvae
 white sturgeon. Prior to hatch, both embryo survival and metabolic rate
 were reduced at 21°C. Following hatch, sublethal consequences continued at
 21°C as larval sturgeon had decreased thermal plasticity and a dampened
 transcriptional response during development.  In recent years,
 the Nechako River has reached 21°C by the end of June, and at this
 temperature, a decrease in sturgeon performance is evident in most of the
 traits measured. As such, the thermal thresholds identified here suggest
 current temperature regulations may not be suitable for developing white
 sturgeon and future recruitment.
DOI: 10.5061/dryad.rbnzs7hgm
title: Model for: Characterizing long‐term population conditions of the elusive red tree vole with dynamic individual‐based modeling

description: Old growth forests are declining globally, threatening dependent wildlife.
 Many arboreal old‐growth obligates, such as the threatened red tree vole,
 are difficult to monitor for changes in habitat occupancy, and abundance.
 Yet, conservation planning relies on this information to prevent
 population declines. We integrated a range of species, habitat, and
 landscape change information to develop a dynamic habitat‐population
 model. The spatial individual‐based model simulated dynamic patterns of
 occupancy that responded to annual habitat maps, describing 36 years of
 observed change. We simulated population dynamics and local movement to
 characterize changes in occupancy and abundance, and the capacity of
 remaining habitat to support red tree voles. Red tree vole redistribution
 patterns strongly corresponded to wildfire footprints and timber
 extraction locations. Population strongholds are likely to exist in
 clumped pockets of old‐growth forest that were unaffected by wildfire and
 in protected old forest reserves. However, the exact number and locations
 of local clusters remain uncertain. Simulated population losses occurred
 at different paces in different places, underscoring the need for
 recurring evaluation of population changes with field occupancy surveys
 and modeled evaluations that can anticipate potential connectivity and
 extirpation thresholds. This modeling approach was effective at leveraging
 existing information for a data‐light species to assess how historical
 changes to the quantity, quality, and configuration of habitat likely
 influenced the potential landscape capacity, species abundance, and
 distribution. Dynamic individual‐based modeling can benefit conservation
 planning for red tree vole and other reclusive forest species by providing
 biologically nuanced assessments of abundance and distribution. Such
 models can also project the long‐term benefits and impacts of spatially
 explicit land management plans.
description: We constructed a spatially explicit individual-based model (IBM)
 for tree voles across their range, using a time series of habitat maps and
 a range of empirical datasets. 
description: We developed the model in the HexSim modeling platform: Available
 as a free download from www.HexSim.net