cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.fuh3qj
title: Occurrence Download

description: A dataset containing 1815 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Megapodius cumingii Dillwyn, 1853"
 ]
}

 The dataset includes 1815 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029173-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kgrcgj
title: Occurrence Download

description: A dataset containing 94 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Cinchona officinalis L."
 ]
}

 The dataset includes 94 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0051226-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-01.1936572/2366074
title: Data for EMSL Project 48666 from January 2020
DOI: 10.15468/dl.odb6as
title: Occurrence Download

description: A dataset containing 27 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Otus silvicola (Wallace, 1864)"
 ]
}

 The dataset includes 27 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010296-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2020-01.1938780/2366075
title: Data for EMSL Project 48666 from January 2020
DOI: 10.15468/dl.sygc78
title: Occurrence Download

description: A dataset containing 992 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Phyllastrephus xavieri (Oustalet, 1892)"
 ]
}

 The dataset includes 992 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029207-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2019-10.1859378/2366076
title: Data for EMSL Project 48666 from October 2019
DOI: 10.15468/dl.5nxhkf
title: Occurrence Download

description: A dataset containing 9725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.1 6.35,-74.8 6.35,-74.8 6.48,-75.1 6.48,-75.1 6.35))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9725 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0029204-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vs7lei
title: Occurrence Download

description: A dataset containing 2212221 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Amphibia",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2212221 records from 784 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010296-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6092/unibo/amsacta/8153
title: Data on tomato post-harvest color

description: This dataset contains data related to the color parameters of tomato after post-harvest conservation.
The data are presented in the publication:
Appolloni, E., Pennisi, G., Paucek, I., Cellini, A., Crepaldi, A., Spinelli, F., Gianquinto, G., Gabarrell, X., Orsini, F. (2023). Potential application of pre-harvest LED interlighting to improve tomato quality and storability. Postharvest Biology and Technology, 195, 112113. DOI 10.1016/j.postharvbio.2022.112113.
DOI: 10.6084/m9.figshare.28251611
title: Supplementary Material for: Histone lysine crotonylation associated epigenetic mechanism dynamically regulates prenatal stress induced anxiety-related behaviour in adolescent offspring

description: Introduction: This study designed to examine whether social/ environmental experiences can induce the epigenetic modification, and influence the associated physiology and behaviour. To test this, we have used social stress [prenatal stress (PNS)] model and then housed at environmental enrichment (EE) condition to evaluate the interaction between specific epigenetic modification and its influence on behaviour. 
 Methods: Pregnant rats were randomly divided into a control group, PNS group, and PNS+EE group. PNS and PNS+EE animals were subjected to social defeat (SD) stress during their gestational day (GD) 16-18. PNS animals and their offspring were always housed in standard laboratory condition, PNS+EE animal was housed in EE cage during GD-10 to the pup’s age of postnatal day (PND) 30. Animals were tested for anxiety-like behaviour using Open-Field Test (OFT) and memory was examined by passive avoidance test. Western blotting was used to detect the expression pattern of molecules associated with histone crotonylation.
 Result: We observed anxiety-like behaviour, memory deficit in the animals experienced PNS. Further, level of Methyl-CpG Binding Protein 2 (MeCP2), repressor element-1 silencing transcription factor (REST), Sirtuin 1(SIRT1), Chromodomain Y-like (CDYL) and Enhancer of Zeste 2 Polycomb Repressive Complex 2 Subunit (EZH2) and histone methylation (H3K27me3) was elevated. Where as, the expression of p300, histone crotonylation (H3K18Cr) and neuropeptide VGF were suppressed. Notably, EE restore the normal expression pattern of MeCP2, REST, P300, SIRT1, CYDL, EZH2, H3K27me3, H3K18Cr and VGF. 
Conclusion: EE reverse the PNS induced alterations, including suppression of histone crotonylation (H3K18Cr), which possibly involved in the regulation of expression of VGF and behaviour.
DOI: 10.6084/m9.figshare.28251611.v1
title: Supplementary Material for: Histone lysine crotonylation associated epigenetic mechanism dynamically regulates prenatal stress induced anxiety-related behaviour in adolescent offspring

description: Introduction: This study designed to examine whether social/ environmental experiences can induce the epigenetic modification, and influence the associated physiology and behaviour. To test this, we have used social stress [prenatal stress (PNS)] model and then housed at environmental enrichment (EE) condition to evaluate the interaction between specific epigenetic modification and its influence on behaviour. 
 Methods: Pregnant rats were randomly divided into a control group, PNS group, and PNS+EE group. PNS and PNS+EE animals were subjected to social defeat (SD) stress during their gestational day (GD) 16-18. PNS animals and their offspring were always housed in standard laboratory condition, PNS+EE animal was housed in EE cage during GD-10 to the pup’s age of postnatal day (PND) 30. Animals were tested for anxiety-like behaviour using Open-Field Test (OFT) and memory was examined by passive avoidance test. Western blotting was used to detect the expression pattern of molecules associated with histone crotonylation.
 Result: We observed anxiety-like behaviour, memory deficit in the animals experienced PNS. Further, level of Methyl-CpG Binding Protein 2 (MeCP2), repressor element-1 silencing transcription factor (REST), Sirtuin 1(SIRT1), Chromodomain Y-like (CDYL) and Enhancer of Zeste 2 Polycomb Repressive Complex 2 Subunit (EZH2) and histone methylation (H3K27me3) was elevated. Where as, the expression of p300, histone crotonylation (H3K18Cr) and neuropeptide VGF were suppressed. Notably, EE restore the normal expression pattern of MeCP2, REST, P300, SIRT1, CYDL, EZH2, H3K27me3, H3K18Cr and VGF. 
Conclusion: EE reverse the PNS induced alterations, including suppression of histone crotonylation (H3K18Cr), which possibly involved in the regulation of expression of VGF and behaviour.
DOI: 10.15468/dl.tt25fq
title: Occurrence Download

description: A dataset containing 5215 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cedrela fissilis Vell."
 ]
}

 The dataset includes 5215 records from 258 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019505-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28269911.v1
title: Supplementary Material for: Transferring mouse Emx1 and Emx2 lentiviruses into the chicken embryonic brain and their implication to the organization and evolution of the amniote pallium

description: Introduction: Homeobox genes are highly conserved and play critical roles in brain development. Recently we have found that mammals have an additional fragment of approximately 20 amino acids in Emx1 and a poly-(Ala)6-7 in Emx2, compared to other amniotes. It has been shown that Emx1 and Emx2 have synergistic actions in the brain development. These reports raise an interesting issue whether the differences of Emx1 and Emx2 between mammals and non-mammals are concerned with the organization and evolution of amniote pallium. Methods: Lentiviruses expressing mouse Emx1 and Emx2 (mEmx1/2) with additional fragments were injected into the ventricle of the chick telencephalon at embryonic day 3 to study the effects of mEmx1/2 on the development of chick pallium, whereas injections of lentiviruses containing chick Emx1 and Emx2 (cEmx1/2), no targeted gene insert or saline were as controls. The expressions of reelin, vimentin, GABA and MAP2, neurogenesis patterns for calbindin and parvalbumin neurons and the sizes of anterior commissure were then studied by immuohistochemical staining, and open-field tests were performed to assess locomotor activities and curious or exploratory behaviors of the chicks. Results: Following the injections of lentiviruses expressing mEmx1/2, the expressions of reelin, vimentin, GABA and MAP2 increased in most parts of Wulst (W) and mesopallium (M), but not of nidopallium (N). Neurogenesis patterns for calbindin (CB) and parvalbumin (PV) neurons changed towards mammalian inside-out one, and the sizes of anterior commissure staining for neurofilament were significantly larger. In addition, posthatchling chicks showed higher rates of passive avoidance after training, but no significant differences in the total distance traveled and the percentage of time spent in the central rectangle, compared to those in the control group. Conclusion: The present study indicated that mEmx1/2 had effects on the development of chick pallium, suggesting that they are probably involved in the organization and evolution of amniote pallium.
DOI: 10.6084/m9.figshare.28269911
title: Supplementary Material for: Transferring mouse Emx1 and Emx2 lentiviruses into the chicken embryonic brain and their implication to the organization and evolution of the amniote pallium

description: Introduction: Homeobox genes are highly conserved and play critical roles in brain development. Recently we have found that mammals have an additional fragment of approximately 20 amino acids in Emx1 and a poly-(Ala)6-7 in Emx2, compared to other amniotes. It has been shown that Emx1 and Emx2 have synergistic actions in the brain development. These reports raise an interesting issue whether the differences of Emx1 and Emx2 between mammals and non-mammals are concerned with the organization and evolution of amniote pallium. Methods: Lentiviruses expressing mouse Emx1 and Emx2 (mEmx1/2) with additional fragments were injected into the ventricle of the chick telencephalon at embryonic day 3 to study the effects of mEmx1/2 on the development of chick pallium, whereas injections of lentiviruses containing chick Emx1 and Emx2 (cEmx1/2), no targeted gene insert or saline were as controls. The expressions of reelin, vimentin, GABA and MAP2, neurogenesis patterns for calbindin and parvalbumin neurons and the sizes of anterior commissure were then studied by immuohistochemical staining, and open-field tests were performed to assess locomotor activities and curious or exploratory behaviors of the chicks. Results: Following the injections of lentiviruses expressing mEmx1/2, the expressions of reelin, vimentin, GABA and MAP2 increased in most parts of Wulst (W) and mesopallium (M), but not of nidopallium (N). Neurogenesis patterns for calbindin (CB) and parvalbumin (PV) neurons changed towards mammalian inside-out one, and the sizes of anterior commissure staining for neurofilament were significantly larger. In addition, posthatchling chicks showed higher rates of passive avoidance after training, but no significant differences in the total distance traveled and the percentage of time spent in the central rectangle, compared to those in the control group. Conclusion: The present study indicated that mEmx1/2 had effects on the development of chick pallium, suggesting that they are probably involved in the organization and evolution of amniote pallium.
DOI: 10.6084/m9.figshare.28269911.v2
title: Supplementary Material for: Transferring mouse Emx1 and Emx2 lentiviruses into the chicken embryonic brain and their implication to the organization and evolution of the amniote pallium

description: Introduction: Homeobox genes are highly conserved and play critical roles in brain development. Recently we have found that mammals have an additional fragment of approximately 20 amino acids in Emx1 and a poly-(Ala)6-7 in Emx2, compared to other amniotes. It has been shown that Emx1 and Emx2 have synergistic actions in the brain development. These reports raise an interesting issue whether the differences of Emx1 and Emx2 between mammals and non-mammals are concerned with the organization and evolution of amniote pallium. Methods: Lentiviruses expressing mouse Emx1 and Emx2 (mEmx1/2) with additional fragments were injected into the ventricle of the chick telencephalon at embryonic day 3 to study the effects of mEmx1/2 on the development of chick pallium, whereas injections of lentiviruses containing chick Emx1 and Emx2 (cEmx1/2), no targeted gene insert or saline were as controls. The expressions of reelin, vimentin, GABA and MAP2, neurogenesis patterns for calbindin and parvalbumin neurons and the sizes of anterior commissure were then studied by immuohistochemical staining, and open-field tests were performed to assess locomotor activities and curious or exploratory behaviors of the chicks. Results: Following the injections of lentiviruses expressing mEmx1/2, the expressions of reelin, vimentin, GABA and MAP2 increased in most parts of Wulst (W) and mesopallium (M), but not of nidopallium (N). Neurogenesis patterns for calbindin (CB) and parvalbumin (PV) neurons changed towards mammalian inside-out one, and the sizes of anterior commissure staining for neurofilament were significantly larger. In addition, posthatchling chicks showed higher rates of passive avoidance after training, but no significant differences in the total distance traveled and the percentage of time spent in the central rectangle, compared to those in the control group. Conclusion: The present study indicated that mEmx1/2 had effects on the development of chick pallium, suggesting that they are probably involved in the organization and evolution of amniote pallium.
DOI: 10.15468/dl.a6xpgh
title: Occurrence Download

description: A dataset containing 2644 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mopseidae"
 ]
}

 The dataset includes 2644 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019513-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28369001
title: LncRNA transcriptome analysis of rainbow trout skin infected with IHNV reveals that lncRNA SARL/miR-205-z/SOCS3 axis negatively regulates antiviral immunity mechanisms-supplementary tables

description: Supplementary tables
DOI: 10.15468/dl.kq8hn5
title: Occurrence Download

description: A dataset containing 80137 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Collection Mollusca SMF"
 ]
}

 The dataset includes 80137 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019509-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28028642.v1
title: SFDformer_data

description: SFDformer_data
DOI: 10.25405/data.ncl.28351814
title: Sedimentary Architecture of UK Wandering Gravel-Bed Rivers, River Coquet, Northumberland, UK

description: GPR and topographic survey using (dGPS) were carried out on the River Coquet between May 17 and June 1, 2017. We used a NERC Geophysical Equipment Facility (GEF) Sensor and Software Pulse Ekko Pro GPR with a 1000V transmitter system, and 50, 100 and 200 MHz antennas (Figure 2). A common offset (CO) survey using three different frequencies of antennas (50, 100 and 200MHz) was performed along single line in the first survey grid (Thropton grid) in order to establish depth of penetration and data resolution, to determine which antenna set would be most appropriate to address the scientific goals of the project. Subsequent GPR grids at Hepple and Holystone were conducted at frequencies of 50, 100 MHz and 100 MHz, respectively.
DOI: 10.25405/data.ncl.28351814.v1
title: Sedimentary Architecture of UK Wandering Gravel-Bed Rivers, River Croquet, Northumberland, UK

description: GPR and topographic survey using (dGPS) were carried out on the River Coquet between May 17 and June 1, 2017. We used a NERC Geophysical Equipment Facility (GEF) Sensor and Software Pulse Ekko Pro GPR with a 1000V transmitter system, and 50, 100 and 200 MHz antennas (Figure 2). A common offset (CO) survey using three different frequencies of antennas (50, 100 and 200MHz) was performed along single line in the first survey grid (Thropton grid) in order to establish depth of penetration and data resolution, to determine which antenna set would be most appropriate to address the scientific goals of the project. Subsequent GPR grids at Hepple and Holystone were conducted at frequencies of 50, 100 MHz and 100 MHz, respectively.
DOI: 10.15468/dl.92yzfh
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Côte d’Ivoire",
 "TaxonKey is Lophira alata Banks ex C.F.Gaertn.",
 "Year 1975-2025"
 ]
}

 The dataset includes 52 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019515-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kkrzr5
title: Occurrence Download

description: A dataset containing 68147 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Keratoisididae"
 ]
}

 The dataset includes 68147 records from 108 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019512-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28293488
title: Supplementary Material for: Cefuroxime Induced Toxic-Maculopathy after Intracameral Injection of Standard Dose: A Case Report

description: Background: Cefuroxime-induced toxic maculopathy can occur when an incorrect or correct dilution is injected intracamerally during cataract surgery.
Case Report: An 83-year-old male developed toxic maculopathy on the first postoperative day after uneventful cataract surgery. An investigation of the case confirmed that the patient developed sporadic toxic maculopathy after a standard intracameral cefuroxime dose. The patient showed complete recovery of vision during the first postoperative week. 
Conclusion: Cefuroxime-induced toxic maculopathy may occur sporadically and have a good visual outcome. It may be distinguished from toxic maculopathy induced by incorrect dilution based on its different clinical appearance and, in some cases, the guarded outcome. Correct dilution of cefuroxime is of utmost importance.
DOI: 10.6084/m9.figshare.28293488.v1
title: Supplementary Material for: Cefuroxime Induced Toxic-Maculopathy after Intracameral Injection of Standard Dose: A Case Report

description: Background: Cefuroxime-induced toxic maculopathy can occur when an incorrect or correct dilution is injected intracamerally during cataract surgery.
Case Report: An 83-year-old male developed toxic maculopathy on the first postoperative day after uneventful cataract surgery. An investigation of the case confirmed that the patient developed sporadic toxic maculopathy after a standard intracameral cefuroxime dose. The patient showed complete recovery of vision during the first postoperative week. 
Conclusion: Cefuroxime-induced toxic maculopathy may occur sporadically and have a good visual outcome. It may be distinguished from toxic maculopathy induced by incorrect dilution based on its different clinical appearance and, in some cases, the guarded outcome. Correct dilution of cefuroxime is of utmost importance.
DOI: 10.15468/dl.du9udd
title: Occurrence Download

description: A dataset containing 155 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.87653 44.76746,19.14803 44.76746,19.14803 46.87716,13.87653 46.87716,13.87653 44.76746))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Triturus carnifex (Laurenti, 1768)"
 ]
}

 The dataset includes 155 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019516-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.