cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20038304.v1
title: An improved method for RNA extraction from common bean seeds and validation of reference genes for qPCR

description: Abstract An RNA extraction method with high integrity and purity as well as the selection of adequate reference genes are prerequisites for gene expression analysis. For common bean seeds, there is no well-defined protocol that can be used in a laboratory routine for gene expression analysis. In this study, an extraction protocol for RNA from common bean seeds, which produced material with good integrity for qPCR (RIN ≥ 6.5), was optimized. In addition, 10 reference genes were evaluated under qPCR standard conditions using different tissue samples of common beans. Gene stabilities were analyzed using the delta-CT method, Bestkeeper, NormFinder and geNorm approaches. The genes β-tubulin and T197 were ranked as the most stable among the sample sets evaluated with different tissue samples, while PvAct and Pv18S were the least stable. To our knowledge, this is the first study evaluating RNA isolation methods and reference gene selection for seeds of Phaseolus vulgaris.
DOI: 10.6084/m9.figshare.20038306
title: Cattleya forbesii x Cattleya bowringiana: a new hybrid of Cattleya orchid

description: Abstract The hybrid between Cattleya forbesii x Cattleya bowringiana shows flowers of lilac coloration, labellum with a light yellow center and striated with purple stripes of the same tone of other floral whorls. The plant flourished four years after seeding and produced, on average, six flowers.
DOI: 10.6084/m9.figshare.20038309.v1
title: Phenotypic characterization of papaya genotypes to determine powdery mildew resistance

description: Abstract In support of breeding of papaya (Carica papaya), the disease incidence and severity of powdery mildew (Ovulariopsis caricicola) were evaluated in papaya genotypes. Two experiments in complete randomized blocks were carried out, one in the field and the other in a greenhouse. In field experiments, the lowest mean disease incidence was observed on the genotypes ‘Costa Rica’ and ‘Baixinho Super’, and the lowest mean disease severity on ‘Caliman M5’, ‘GTF’, ‘SH 11-08’, and ‘JS 11’. In the greenhouse experiment, the genotypes ‘Caliman M5’, ‘Golden’, ‘Kapoho Solo’, ‘Waimanalo’, ‘Mamão Bené’, ‘SH 12-07’, ‘JS 12’, and ‘GTF’ had the lowest mean incidence in at least one evaluation. On the other hand, for severity, the genotypes ‘Diva’, ‘Sunrise Solo 72/12’, ‘Kapoho Solo PA’, ‘Waimanalo’, ‘Maradol’, ‘Maradol GL’, ‘SH 15-04’, ‘FMV, ‘JS 12-4’, ‘SH 12-07’ and ‘Sekati FLM’ had the lowest means. These results indicate these genotypes for a possible use in breeding for reduction of powdery mildew intensity.
DOI: 10.6084/m9.figshare.20038309
title: Phenotypic characterization of papaya genotypes to determine powdery mildew resistance

description: Abstract In support of breeding of papaya (Carica papaya), the disease incidence and severity of powdery mildew (Ovulariopsis caricicola) were evaluated in papaya genotypes. Two experiments in complete randomized blocks were carried out, one in the field and the other in a greenhouse. In field experiments, the lowest mean disease incidence was observed on the genotypes ‘Costa Rica’ and ‘Baixinho Super’, and the lowest mean disease severity on ‘Caliman M5’, ‘GTF’, ‘SH 11-08’, and ‘JS 11’. In the greenhouse experiment, the genotypes ‘Caliman M5’, ‘Golden’, ‘Kapoho Solo’, ‘Waimanalo’, ‘Mamão Bené’, ‘SH 12-07’, ‘JS 12’, and ‘GTF’ had the lowest mean incidence in at least one evaluation. On the other hand, for severity, the genotypes ‘Diva’, ‘Sunrise Solo 72/12’, ‘Kapoho Solo PA’, ‘Waimanalo’, ‘Maradol’, ‘Maradol GL’, ‘SH 15-04’, ‘FMV, ‘JS 12-4’, ‘SH 12-07’ and ‘Sekati FLM’ had the lowest means. These results indicate these genotypes for a possible use in breeding for reduction of powdery mildew intensity.
DOI: 10.6084/m9.figshare.20038310
title: Micropropagation of Cyrtopodium paludicolum (Orchidaceae) from root tip explants

description: Abstract An efficient protocol for in vitro plant propagation of Cyrtopodium paludicolum has been developed using root tips dissected from well-developed seedlings. Root tips were cultured on Knudson medium supplemented with α-naphthaleneacetic acid (NAA), and/or thidiazuron (TDZ). TDZ did not induce protocorm-like bodies (PLBs) in the NAA absence, indicating phytoregulators synergistic effect. Medium supplemented with 1.34 μM NAA and 2.27 μM TDZ resulted in better response on PBLs, and subsequent shoot differentiation (55.25 shoots per explant), and in better rooting number and root length responses, favoring acclimatization with 90% of survived plants. However, the medium supplemented with only NAA (1.34 μM) resulted in 33.50 shoots per explant. Histological sections confirmed that only one PLB was induced per responsive root tip, and it showed numerous dispersed and extended meristemoids, or division centers that originated new PBLs. Additionally, this protocol could be an excellent model to study molecular aspects of root to shoot conversion.
DOI: 10.6084/m9.figshare.20038310.v1
title: Micropropagation of Cyrtopodium paludicolum (Orchidaceae) from root tip explants

description: Abstract An efficient protocol for in vitro plant propagation of Cyrtopodium paludicolum has been developed using root tips dissected from well-developed seedlings. Root tips were cultured on Knudson medium supplemented with α-naphthaleneacetic acid (NAA), and/or thidiazuron (TDZ). TDZ did not induce protocorm-like bodies (PLBs) in the NAA absence, indicating phytoregulators synergistic effect. Medium supplemented with 1.34 μM NAA and 2.27 μM TDZ resulted in better response on PBLs, and subsequent shoot differentiation (55.25 shoots per explant), and in better rooting number and root length responses, favoring acclimatization with 90% of survived plants. However, the medium supplemented with only NAA (1.34 μM) resulted in 33.50 shoots per explant. Histological sections confirmed that only one PLB was induced per responsive root tip, and it showed numerous dispersed and extended meristemoids, or division centers that originated new PBLs. Additionally, this protocol could be an excellent model to study molecular aspects of root to shoot conversion.
DOI: 10.6084/m9.figshare.20038313
title: Evaluation of total flavonoid content and analysis of related EST-SSR in Chinese peanut germplasm

description: Abstract As important antioxidants and secondary metabolites in peanut seeds, flavonoids have great nutritive value. In this study, total flavonoid contents (TFC) were determined in seeds of 57 peanut accessions from the province of Hebei, China. A variation of 0.39 to 4.53 mg RT g-1 FW was found, and eight germplasm samples containing more than 3.5 mg RT g-1 FW. The TFC of seed embryos ranged from 0.14 to 0.77mg RT g-1 FW. With a view to breeding high-quality peanut varieties with high yields and high TFC, we analyzed the correlations between TFC and plant and pod characteristics. The results of correlation analysis indicated that TFC was significantly negatively correlated with pod number per plant (P/P) and soluble protein content (SPC). We used 251 pairs of expressed sequence tag - simple sequence repeat (EST-SSRs) primers to sequence all germplasm samples and found four EST-SSR markers that were significantly related to TFC.
DOI: 10.6084/m9.figshare.20038313.v1
title: Evaluation of total flavonoid content and analysis of related EST-SSR in Chinese peanut germplasm

description: Abstract As important antioxidants and secondary metabolites in peanut seeds, flavonoids have great nutritive value. In this study, total flavonoid contents (TFC) were determined in seeds of 57 peanut accessions from the province of Hebei, China. A variation of 0.39 to 4.53 mg RT g-1 FW was found, and eight germplasm samples containing more than 3.5 mg RT g-1 FW. The TFC of seed embryos ranged from 0.14 to 0.77mg RT g-1 FW. With a view to breeding high-quality peanut varieties with high yields and high TFC, we analyzed the correlations between TFC and plant and pod characteristics. The results of correlation analysis indicated that TFC was significantly negatively correlated with pod number per plant (P/P) and soluble protein content (SPC). We used 251 pairs of expressed sequence tag - simple sequence repeat (EST-SSRs) primers to sequence all germplasm samples and found four EST-SSR markers that were significantly related to TFC.
DOI: 10.6084/m9.figshare.20038315
title: Gene transfer utilizing pollen-tubes of Albuca nelsonii and Tulbaghia violacea

description: Abstract Developing a tissue culture-independent genetic transformation system would be an interesting technique for gene transfer in valuable medicinal and horticultural plants. Efficient gene delivery (Agrobacterium tumefaciens strain LBA 4404: harbouring PBI121 plasmid) was achieved with Km-resistant pollen grains (pollen tube technique) and were found to be GUS-positive for Albuca nelsonii (31.3%) and Tulbaghia violacea (32.6%). The Km-resistance (95.6% for A. nelsonii and 86.7% for T. violacea) and GUS-positive (100% for A. nelsonii and 97.5% for T. violacea) putative transgenic seedlings in vitro were obtained with 200 mg L-1 Km. The in vitro plants were obtained from leaf explants of putative transgenic seedlings and were confirmed to be Km-resistant and GUS-positive (T. violacea, 73.7% and A. nelsonii, 80.5%). The plants were successfully acclimatized in the greenhouse. We describe a tissue culture-independent gene transfer technique with high efficiency clonal transgenic plant production for A. nelsonii and T. violacea. This can also be applied to biotechnological crop improvement of the same species and potentially to other plants.
DOI: 10.6084/m9.figshare.20038316
title: Oleic acid variation and marker-assisted detection of Pervenets mutation in high- and low-oleic sunflower cross

description: Abstract High-oleic sunflower oil is in high demand on the market due to its heart-healthy properties and richness in monounsaturated fatty acids that makes it more stable in processing than standard sunflower oil. Consequently, one of sunflower breeder’s tasks is to develop stable high-oleic sunflower genotypes that will produce high quality oil. We analyzed variability and inheritance of oleic acid content (OAC) in sunflower, developed at the Institute of Field and Vegetable Crops, by analyzing F1 and F2 progeny obtained by crossing a standard linoleic and high-oleic inbred line. F2 individuals were classified in two groups: low-oleic with OAC of 15.24-31.28% and high-oleic with OAC of 62.49-93.82%. Monogenic dominant inheritance was observed. Additionally, several molecular markers were tested for the use in marker-assisted selection in order to shorten the period of detecting high-oleic genotypes. Marker F4-R1 was proven to be the most efficient in detection of genotypes with Pervenets (high-oleic acid) mutation.
DOI: 10.6084/m9.figshare.20038316.v1
title: Oleic acid variation and marker-assisted detection of Pervenets mutation in high- and low-oleic sunflower cross

description: Abstract High-oleic sunflower oil is in high demand on the market due to its heart-healthy properties and richness in monounsaturated fatty acids that makes it more stable in processing than standard sunflower oil. Consequently, one of sunflower breeder’s tasks is to develop stable high-oleic sunflower genotypes that will produce high quality oil. We analyzed variability and inheritance of oleic acid content (OAC) in sunflower, developed at the Institute of Field and Vegetable Crops, by analyzing F1 and F2 progeny obtained by crossing a standard linoleic and high-oleic inbred line. F2 individuals were classified in two groups: low-oleic with OAC of 15.24-31.28% and high-oleic with OAC of 62.49-93.82%. Monogenic dominant inheritance was observed. Additionally, several molecular markers were tested for the use in marker-assisted selection in order to shorten the period of detecting high-oleic genotypes. Marker F4-R1 was proven to be the most efficient in detection of genotypes with Pervenets (high-oleic acid) mutation.
DOI: 10.6084/m9.figshare.20038318
title: Introgression of the Rl adg allele of resistance to potato leafroll virus in Solanum tuberosum L.

description: Abstract Genetic resistance to Potato Leafroll Virus (PLRV) is polygenic, which hinders the obtainment of resistant cultivars. However, works carried out at the International Potato Center have identified an andigena accession, LOP-868, with high resistance level and low accumulation of PLRV due to the gene of major effect Rladg. We verify the transfer of the Rladg allele to clones of the cross between LOP-868 and UFLA clones, by using the SCAR RGASC850 molecular marker; to evaluate the reaction of these clones to PLRV by inoculating the virus using aphids; and to analyze their agronomic performance of clones. Among the clones inoculated with viruliferous aphids, 49.3% were negative to the serological test, indicating possible resistance. Clones containing the Rladg allele were identified by the RGASC850 molecular marker, which demonstrates the possibility of transferring the Rladg allele of resistance to PLRV from LOP-868 to Solanum tuberosum. Some clones that presented the Rladg allele are also promising for agronomic performance.
DOI: 10.6084/m9.figshare.20038318.v1
title: Introgression of the Rl adg allele of resistance to potato leafroll virus in Solanum tuberosum L.

description: Abstract Genetic resistance to Potato Leafroll Virus (PLRV) is polygenic, which hinders the obtainment of resistant cultivars. However, works carried out at the International Potato Center have identified an andigena accession, LOP-868, with high resistance level and low accumulation of PLRV due to the gene of major effect Rladg. We verify the transfer of the Rladg allele to clones of the cross between LOP-868 and UFLA clones, by using the SCAR RGASC850 molecular marker; to evaluate the reaction of these clones to PLRV by inoculating the virus using aphids; and to analyze their agronomic performance of clones. Among the clones inoculated with viruliferous aphids, 49.3% were negative to the serological test, indicating possible resistance. Clones containing the Rladg allele were identified by the RGASC850 molecular marker, which demonstrates the possibility of transferring the Rladg allele of resistance to PLRV from LOP-868 to Solanum tuberosum. Some clones that presented the Rladg allele are also promising for agronomic performance.
DOI: 10.6084/m9.figshare.20038319.v1
title: A multiplex PCR system for detection of wide compatibility allele S5-n and erect panicle allele dep1 in rice

description: Abstract Wide compatibility and erect panicles are important traits for heterosis and ideal plant type breeding in rice and accordingly are targets for rice yield improvement. In this study, a multiplex PCR system based on functional markers was developed to simultaneously identify genotypes of the wide compatibility allele S5-n and the erect panicle allele dep1. Forty-nine rice varieties in the Huang-Huai-Hai region of China were identified using this system. Thirty-three varieties contained the erect panicle allele dep1 and two varieties contained the wide compatibility allele S5-n. The frequency of dep1 was obviously higher than that of S5-n. The multiplex PCR method was also tested using an F2 segregating population and was found to be simple, efficient, and reliable. It will be useful in marker-assisted selection based on the wide compatibility allele S5-n and erect panicle allele dep1 to breed super rice varieties using indica and japonica heterosis.
DOI: 10.6084/m9.figshare.20038319
title: A multiplex PCR system for detection of wide compatibility allele S5-n and erect panicle allele dep1 in rice

description: Abstract Wide compatibility and erect panicles are important traits for heterosis and ideal plant type breeding in rice and accordingly are targets for rice yield improvement. In this study, a multiplex PCR system based on functional markers was developed to simultaneously identify genotypes of the wide compatibility allele S5-n and the erect panicle allele dep1. Forty-nine rice varieties in the Huang-Huai-Hai region of China were identified using this system. Thirty-three varieties contained the erect panicle allele dep1 and two varieties contained the wide compatibility allele S5-n. The frequency of dep1 was obviously higher than that of S5-n. The multiplex PCR method was also tested using an F2 segregating population and was found to be simple, efficient, and reliable. It will be useful in marker-assisted selection based on the wide compatibility allele S5-n and erect panicle allele dep1 to breed super rice varieties using indica and japonica heterosis.
DOI: 10.6084/m9.figshare.20038321
title: Passiflora cristalina and Passiflora miniata: meiotic characterization of two wild species for use in breeding

description: Abstract Passiflora cristalina and Passiflora miniata are two new wild species found in the southern Amazon region. This study aimed to analyze the meiotic behavior of the two species, by meiotic analysis, meiotic index and pollen grain viability, using routine methodologies of the laboratory. By the meiotic analysis, the two species were diploid with 18 chromosomes, and nine bivalents were observed in diakinesis. Laggard chromosomes and fiber spindle problems were the abnormalities observed in both species. The recombination indices were 21.6 and 18.8 for P. cristalina and P. miniata, respectively. The most common abnormal post-meiotic products were triads. The meiotic index and the pollen grain viability for P. cristalina were 90.6% and 98.9%, respectively, and 91.6% and 82.2% for P. miniata, respectively. Based on the results, both species are fertile. Thus, gene transference to sour passion fruit by interspecific hybridization is possible in breeding programs.
DOI: 10.6084/m9.figshare.20038321.v1
title: Passiflora cristalina and Passiflora miniata: meiotic characterization of two wild species for use in breeding

description: Abstract Passiflora cristalina and Passiflora miniata are two new wild species found in the southern Amazon region. This study aimed to analyze the meiotic behavior of the two species, by meiotic analysis, meiotic index and pollen grain viability, using routine methodologies of the laboratory. By the meiotic analysis, the two species were diploid with 18 chromosomes, and nine bivalents were observed in diakinesis. Laggard chromosomes and fiber spindle problems were the abnormalities observed in both species. The recombination indices were 21.6 and 18.8 for P. cristalina and P. miniata, respectively. The most common abnormal post-meiotic products were triads. The meiotic index and the pollen grain viability for P. cristalina were 90.6% and 98.9%, respectively, and 91.6% and 82.2% for P. miniata, respectively. Based on the results, both species are fertile. Thus, gene transference to sour passion fruit by interspecific hybridization is possible in breeding programs.
DOI: 10.6084/m9.figshare.20038322
title: MS INTA 416: A new Argentinean wheat cultivar carrying Fhb1 and Lr47 resistance genes

description: Abstract MS INTA 416 is a hard red winter wheat selected for high yield potential and good bread-making quality, combined with moderate resistance to Fusarium-head-blight and high resistance to leaf-rust, due mainly to presence of resistance genes Fhb1 and Lr47. MS INTA 416 is adapted to main production areas of Central-Argentina.
DOI: 10.6084/m9.figshare.20038322.v1
title: MS INTA 416: A new Argentinean wheat cultivar carrying Fhb1 and Lr47 resistance genes

description: Abstract MS INTA 416 is a hard red winter wheat selected for high yield potential and good bread-making quality, combined with moderate resistance to Fusarium-head-blight and high resistance to leaf-rust, due mainly to presence of resistance genes Fhb1 and Lr47. MS INTA 416 is adapted to main production areas of Central-Argentina.
DOI: 10.6084/m9.figshare.20038325
title: A genetic study of traits related to canopy coverage in common bean

description: Abstract In this study we aimed to investigate genetic control of the emergence speed index (ESI) and percentage of canopy coverage (PCC) in plants, and to evaluate whether these traits can be used to identify common bean plants that rapidly provide canopy coverage. Plants from a segregating population and progenies from a cross between a large leaf line and a small leaf line were evaluated. It was observed variability for ESI, however, the low magnitude of heritability indicates that the probability of success from selection is not high. The additive effect was predominant in genetic control of PCC. Nevertheless, this trait is highly affected by the genotype by environment interaction, which makes success from selection even more difficult. The association between ESI and PCC was also low. This information can guide decision making in programs that aim at fast canopy coverage in common bean.
DOI: 10.6084/m9.figshare.5634577.v1
title: Allele dosage of PVY resistance genes in potato clones using molecular markers

description: Abstract Potato virus Y (PVY) is considered one of the most important pathogens in potato crop. The objective of this study was to estimate the allele dosage of Ry genes and select clones with multiple copies of resistance alleles to be used as parents in potato breeding programs. Seven clonal families were genotyped, including five parents with resistance to PVY. For the allele Ryadg, based on the marker RYSC3, four parents are simplex, and one is duplex. For the allele Rysto, based on the marker M45, two parents are simplex and one is duplex. For two parents, the observed frequencies of the allele Rysto did not statistically adjust to any of the proposed genotypic constitutions. Based on the results obtained, both markers must be used in marker assisted selection for resistance to PVY, in order to decrease the error of discarding clones with only one of the alleles.
DOI: 10.6084/m9.figshare.20038325.v1
title: A genetic study of traits related to canopy coverage in common bean

description: Abstract In this study we aimed to investigate genetic control of the emergence speed index (ESI) and percentage of canopy coverage (PCC) in plants, and to evaluate whether these traits can be used to identify common bean plants that rapidly provide canopy coverage. Plants from a segregating population and progenies from a cross between a large leaf line and a small leaf line were evaluated. It was observed variability for ESI, however, the low magnitude of heritability indicates that the probability of success from selection is not high. The additive effect was predominant in genetic control of PCC. Nevertheless, this trait is highly affected by the genotype by environment interaction, which makes success from selection even more difficult. The association between ESI and PCC was also low. This information can guide decision making in programs that aim at fast canopy coverage in common bean.
DOI: 10.6084/m9.figshare.5634577
title: Allele dosage of PVY resistance genes in potato clones using molecular markers

description: Abstract Potato virus Y (PVY) is considered one of the most important pathogens in potato crop. The objective of this study was to estimate the allele dosage of Ry genes and select clones with multiple copies of resistance alleles to be used as parents in potato breeding programs. Seven clonal families were genotyped, including five parents with resistance to PVY. For the allele Ryadg, based on the marker RYSC3, four parents are simplex, and one is duplex. For the allele Rysto, based on the marker M45, two parents are simplex and one is duplex. For two parents, the observed frequencies of the allele Rysto did not statistically adjust to any of the proposed genotypic constitutions. Based on the results obtained, both markers must be used in marker assisted selection for resistance to PVY, in order to decrease the error of discarding clones with only one of the alleles.