cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/mkmv4mdxxs.1
title: Dataset for centrifuge modelling of laterally monotone loaded monopiles in saturated dense sand

description: The presented dataset is collected in seven centrifuge tests, specifically designed for modelling the lateral response of offshore monopiles in a dense sand. Two model piles with outer diameter D = 50 mm are loaded laterally at 100×g. The embedding depths are 3D, 5D, 7D and 9D with load eccentricity varies from 5 to 15. Fibre Bragg gratings (FBGs) are employed to measure the tensile and compressive strains. The raw data from various sensors during the tests and the analysed data (e.g. soil reaction, pile deflection) are included in separate editable files, enabling future reuse and further development of the experimental results.
DOI: 10.17632/9zp2hh598z.1
title: Blue Native Gel C.1086 Variants

description: Figure 2D of manuscript titled "Structure-guided changes at the V2 apex of HIV-1 Clade C trimer enhance the elicitation of autologous neutralizing and broad V1V2-scaffold antibodies"
Blue native PAGE (BN-PAGE) of purified C.1086 proteins with molecular weight standard.
DOI: 10.17632/rf8f7sf4cd.1
title: Data for: Life history variation in eelgrass

description: Hypotheses: Allocation to shoot size, branching, and flowering differs across five populations of eelgrass (Zostera marina) in Willapa Bay, Washington, and reflects estuarine environmental variation. Methods: From May 2019 to Oct 2020, shoots were measured for multiple traits: length, biomass, branching, density, leaf emergence rate, internode length, above-per-below ground ratio, and flowering. Results: Across sites, shoot size traded off with branching, and flowering occurred along an orthogonal axis in multivariate space. Two populations were annual (germinating and flowering over summer months), and three populations were perennial (lower rates of flowering, shoots that survived overwinter). Flowering at annual sites lagged perennial sites by two months. At perennial sites, relative growth rate peaked with daylength, but flowering was initiated before, size lagged, and branching occurred in two peaks on either side of the longest days. Annual populations occurred at higher tidal elevation. Shoot length declined at more thermally-variable sites. Data: Density_Archive.xls contains eelgrass shoot counts from field quadrats. Sites_Archive.xls contains site meta-data. Growth_Archive.xls contains measurements on individual shoots, including many that were marked for growth in the field and collected about two weeks later. R2019transplantTsummer.csv, R2019transplantTwinter.csv, and R2020transplantTsummer.csv contain temperatures measured with continuous autonomous sensors at each site.
DOI: 10.17632/bxkkp6bv2j.3
title: Mapping the invisible chromatin transactions of prophase chromosome remodelling

description: Original image data for Figures 1, 2 and 6
DOI: 10.17632/2jg9hmdhhf.1
title: T1 periventricular gradient

description: The data show 
absolute T1 values in healthy controls (in 30 periventricular "bands")
absolute T1 values in normal appearing white matter and lesions in patients with multiple sclerosis (in 30 periventricular "bands")
volume of voxels above particular z-scores (deviations from a normative values obtained by using a study-specific atlas) and mean/absolute z-scores (in 30 periventricular "bands")
RIng/band 1 is the ring closest to the ependyma/ventricles and was excluded from the analysis
EDSS = Expanded Disability Status Scale (disability measure in Multiple Sclerosis)
DOI: 10.5281/zenodo.5856349
title: Data from: The extreme rainfall gradient of the Cape Horn Biosphere Reserve and its impact on forest bird richness. Biodiversity and Conservation

description: <strong>Description of dataset</strong> This dataset contains information about forest bird species richness and climatic variables in 61 sample sites of the Cape Horn Biosphere Reserve. This dataset was analysed in : Quilodrán CS, Sandvig EM, Aguirre F, Rivero de Aguilar J, Barroso O, Vásquez RA, and R Rozzi. 2022. Effects of the extreme rainfall gradient in the Cape Horn Biosphere Reserve on forest bird richness. <em>Biodiversity and Conservation</em>. <strong>Acknowledgments </strong> This study was funded by grants for Technological Centers of Excellence with Basal Financing of the National Agency for Research and Development (ANID-Chile), granted to the Cape Horn International Center (CHIC- FB210018) and the Institute of Ecology and Biodiversity (IEB-AFB170008). CSQ acknowledges support from the Swiss National Science Foundation (N°P5R5PB_203169).
DOI: 10.5281/zenodo.5856348
title: Data from: The extreme rainfall gradient of the Cape Horn Biosphere Reserve and its impact on forest bird richness. Biodiversity and Conservation

description: <strong>Description of dataset</strong> This dataset contains information about forest bird species richness and climatic variables in 61 sample sites of the Cape Horn Biosphere Reserve. This dataset was analysed in : Quilodrán CS, Sandvig EM, Aguirre F, Rivero de Aguilar J, Barroso O, Vásquez RA, and R Rozzi. 2022. Effects of the extreme rainfall gradient in the Cape Horn Biosphere Reserve on forest bird richness. <em>Biodiversity and Conservation</em>. <strong>Acknowledgments </strong> This study was funded by grants for Technological Centers of Excellence with Basal Financing of the National Agency for Research and Development (ANID-Chile), granted to the Cape Horn International Center (CHIC- FB210018) and the Institute of Ecology and Biodiversity (IEB-AFB170008). CSQ acknowledges support from the Swiss National Science Foundation (N°P5R5PB_203169).
DOI: 10.17632/vc3cyv4tsc.1
title: Evolution of Hypodensity on Non-contrast CT in Correlation with Collaterals in Anterior Circulation Stroke with Successful Endovascular Reperfusion

description: Introduction: The aim of the study was to assess the impact of collaterals on the evolution of hypodensity on non-contrast CT (NCCT) in anterior circulation stroke with reperfusion by mechanical thrombectomy (MT). Methods: We retrospectively included stroke patients with middle cerebral artery occlusion who were reperfused by MT in early and late time window. Artificial intelligence (AI)-based software was used to calculate of hypodensity volumes at baseline NCCT (V1) and at follow-up NCCT 24 h after MT (V2), along with the difference between the two volumes (V2-V1) and the follow-up (V2)/baseline (V1) volume ratio (V2/V1). The same software was used to classify collateral status by using a 4-point scale where the score of zero indicated no collaterals and the score of three represented contrast filling of all collaterals. The volumetric values were correlated with the collateral scores. Results: Collateral scores had significant negative correlation with V1 (p = 0.035), V2, V2-V1 and V2/V1 (p < 0.001). In cases with collateral score = 3, V2 was significantly smaller or absent compared to V1; in those with collateral score 2, V2 was slightly larger than V1, and in those with scores 1 and 0 V2 was significantly larger than V1. These relationships were observed in both early and late time windows. Conclusions: The collateral status determined the evolution of the baseline hypodensity on NCCT in patients with anterior circulation stroke who had MT reperfusion. Damage can be stable or reversible in patients with good collaterals while in those with poor collaterals tissues that initially appear normal will frequently appear as necrotic after 24 h. With good collaterals, it is stable or can be reversible while with poor collaterals, normal looking tissue frequently appears as necrotic in follow-up exam. Hence, acute hypodensity represents different states of the ischemic brain parenchyma.
DOI: 10.17632/zg2wx6s76w.1
title: Cotton_Dataset

description: The dataset contains images of five growth stages of the cotton crop. The five stages are: 
sprout stage, 
seedling stage, 
plant stage, 
flowering stage,
plant with fruit stage.
DOI: 10.17632/g3vsvxcrhx.1
title: LDHU3_07.0360

description: ubiquitin-protein ligase-like
Leishmania donovani (HU3 strain)
DOI: 10.17632/57pzfs9vgg.1
title: Parameter Correction influence on Monolithic Sliding Stability Probability of Retained Multilayer Soil Slope

description: Various design stability probabilities are compared based on modified geotechnical parameters. These comprehensive stability probability calculation methods can explore well the variation of stability probability of wall-retained slope engineering caused by RVs.
DOI: 10.17632/pdh9422c2g.1
title: Up-regulation of lncRNA SNHG11 is related to malignant transformation of human bronchial epithelial cells induced by beryllium sulfate

description: Figure 1. BeSO4 impaired cell viability of 16HBE cells after 48 hr exposure. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the control group.

Figure 2. Morphological and proliferation vitality changes of 16HBE cells induced by long-term low-dose BeSO4 exposure. (A) Low-dose exposure to BeSO4 resulted in morphological changes of 16HBE cells. (B) Low-dose exposure to BeSO4 led to the loss of contact inhibition of 16HBE cells. (C-H) Low-dose exposure to BeSO4 enhanced cell proliferation ability and shortened doubling time of 16HBE cells. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the passage 0, #p < 0.05, compared with the control of corresponding passage.

Figure 3. Low-dose exposure to BeSO4 resulted in colony formation of 16HBE cells in soft agar. (A) The absence of cell colony in soft agar in the control group, a few colonies at the 25th passage, and an increase in the number of colonies at the 35th and 45th passage after BeSO4 exposure. (B) The colony formation efficiency (‰) was increased after BeSO4 exposure for 25 passages. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the passage 0, #p < 0.05, compared with the control of corresponding passage.

Figure 4. Dynamic changes of MMP9, MMP2, PCNA, cyclin D1, and p53 in 16HBE cells exposed to BeSO4 at different passages. (A) The expression levels of MMP9, MMP2, PCNA, cyclin D1, and p53 proteins were determined by western blot in 16HBE cells with or without BeSO4 exposure. (B-F) The proteins densitometric analysis. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the passage 0, #p < 0.05, compared with the control of corresponding passage.

Figure 5. The expression of lncRNAs at different passages of malignant transformation of 16HBE cells induced by BeSO4. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the passage 0, #p < 0.05, compared with the control of corresponding passage.

Figure 6. Changes of proliferation, invasion, and migration abilities of 16HBE and T-16HBE cells with or without SNHG11 interference. (A) The expression level of SNHG11 was detected by qRT-PCR after siRNA transfection. (B) The cell proliferation was detected by CCK-8 after SNHG11 knockdown. (C-D) Relative protein levels of MMP9, MMP2, PCNA, cyclin D1, and p53 in 16HBE and T-16HBE cells with or without SNHG11 siRNA transfection. (E-G) The cell invasion and migration abilities were detected by transwell assay after SNHG11 knockdown. The data are expressed as the mean ± standard deviation, n=3. *p < 0.05, compared with the control group, #p < 0.05, compared with the si-NC group.
DOI: 10.6084/m9.figshare.16910290
title: Metadata record for: Comprehensive diffusion MRI dataset for in vivo human brain microstructure mapping using 300 mT/m gradients

description: This dataset contains key characteristics about the data described in the Data Descriptor Comprehensive diffusion MRI dataset for in vivo human brain microstructure mapping using 300 mT/m gradients. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.16910290.v1
title: Metadata record for: Comprehensive diffusion MRI dataset for in vivo human brain microstructure mapping using 300 mT/m gradients

description: This dataset contains key characteristics about the data described in the Data Descriptor Comprehensive diffusion MRI dataset for in vivo human brain microstructure mapping using 300 mT/m gradients. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.5281/zenodo.5865806
title: Supporting Data - Double Ridge Formation over Shallow Water Sills on Jupiter's Moon Europa

description: This archive contains data produced in support of R. Culberg, D. M. Schroeder, G. Steinbrügge, Double Ridge Formation Over Shallow Water Sills on Jupiter’s Moon Europa, <em>Nature Communications</em>, 2022. This includes the WorldView imagery in Figure 1, the reprocessed radargrams underlying the radar analysis and inversion, and outputs of all inversion and sensitivity test runs. See the README file for a complete description of the files available in this archive.
DOI: 10.17632/zyhpnk8v3k.2
title: POPULATION-DEPENDENT STRESS RESPONSE OF BIVALVE MOLLUSC UNIO TUMIDUS TO IBUPROFEN, MICROPLASTIC AND THEIR MIXTURE

description: Non-steroidal anti-inflammatory drugs are among the most distributed pharmaceuticals in the surface waters. Microplastics (MPs) in the water column can modulate the effects of drugs, particularly in the filter feeders. This study aimed to indicate the effect of ibuprofen (IBU) and MP on the bivalve molluscs at environmentally relevant sub-chronic exposures utilizing biomarkers of stress and toxicity. The specimens of Unio tumidus from pristine (Pr) and contaminated (Ct) areas were treated with IBU (0.8 µg L−1), MP (1 mg L−1, size 0.1–0.5 mm), or their combination (Mix) for 14 days. Untreated mussels served as controls for pristine and contaminated areas, respectively Pr(C)- and Ct(C)-group. The Pr(C)-group had higher levels of antioxidants Mn-SOD, Cu, Zn-SOD, and catalase as well as lesser levels of oxidative lesions (TBARS and protein carbonyls) and cholinesterase (ChE) than the Ct(C)-group. The only similar response to MP in both populations was the activation of Mn-SOD. Generally, stress responses were dependent on the site rather than on the exposure: Ct-groups showed enhanced stress, whereas Pr-groups were characterized by fairly stable levels of oxidative stress indexes in all the treatments. The action of IBU and Mix increased the ChE activity in both populations and lysosomal integrity in Ct-groups. The integrated biochemical and discriminant analyses indicated the modulation of IBU-induced responses by MP in both populations, particularly in the molluscs from the contaminated area.
DOI: 10.5281/zenodo.5794191
title: Surveyance of apparent unfolding curves via thiol labelling

description: Dataset contains raw and preprocessed data for fluorescence and proteomic studies respectively. In each case, protein foldedness was probed using thiol reactivity. The raw mass spectrometry proteomics data have also been deposited to the ProteomeXchange Consortium via the PRIDE partner repository, with the dataset identifiers PXD022587, PXD022640 and PXD030567.
DOI: 10.5281/zenodo.4280620
title: Surveyance of apparent unfolding curves via thiol labelling

description: Dataset contains raw and preprocessed data for fluorescence and proteomic studies respectively. In each case, protein foldedness was probed using thiol reactivity. The raw mass spectrometry proteomics data have also been deposited to the ProteomeXchange Consortium via the PRIDE partner repository, with the dataset identifiers PXD022587, PXD022640 and PXD030567.
DOI: 10.24431/rw1k6c3
title: A biologging database of juvenile white sharks from the Northeast Pacific, 2001-2020

description: These satellite tag data were collected on juvenile white sharks (&lt; 300 cm TL) tagged in Southern California between 2001 and 2020 to describe movement patterns and habitat use. Wildlife Computers SPOT5 and PAT (MK10, MiniPAT, PAT2, PAT4) tags were deployed. Data collected include: 1) date, time and location of tag deployment, 2) date, time and location of Argos hits on SPOT tags, 3) date, time and location of PAT tag pop-off, 4) light geolocation of PAT tag while at liberty, 5) depth and temperature time series and histograms from PAT tags. Data provided in CSV and proprietary Wildlife Computers formats.
DOI: 10.5281/zenodo.5866579
title: CL emission and absorption spectra of MoS2 pyramids

description: Cathodoluminescence spectra of MoS2 pyramid on sapphire substrate. Extensive experimental data used for the publication: https://doi.org/10.1039/D1NR06041D "Excitonic absorption and defect related emission in three-dimensional MoS2 pyramids" In the file the maps with the different areas highlighted. To each area corresponds an average spectrum.
DOI: 10.17632/tcj3dn5zrf.1
title: A predictive system for Henoch-Schönlein purpura nephritis established by multivariate analysis plus nomogram model in Chinese hospitalized children: A retrospective cohort study - Supplemental Figure 1

description: Supplemental Figure. 1 legend: 
Evaluation of the predictive system for HSPN based on hospitalized pediatric HSP patients. Calibration curves: the X-axis represents the nomogram-predicted probability of HSPN, and the Y-axis represents the actually observed probability. Perfect prediction would correspond to the 45-degree dotted black line. The solid red line represents the entire cohort without bias-correction, and the solid blue line is bias-corrected by bootstrapping (B=1,000 repetitions), indicating the observed nomogram performance.
DOI: 10.17632/x4s5nymkr7.1
title: South African Gamer Needs Analysis

description: The research focus is to explore how Black, Coloured and Indian (BCI) gamers in South Africa would like to be represented in games, and secondly, how this understanding can inform game development in South Africa. An emergent research design was opted for and via interviews and online questionnaires data were obtained and analysed according to the principles of grounded theory.
DOI: 10.6084/m9.figshare.16828204
title: Metadata record for: Landscape Dynamics (landDX) an open-access spatial-temporal database for the Kenya-Tanzania borderlands

description: This dataset contains key characteristics about the data described in the Data Descriptor Landscape Dynamics (landDX) an open-access spatial-temporal database for the Kenya-Tanzania borderlands. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.16828204.v1
title: Metadata record for: Landscape Dynamics (landDX) an open-access spatial-temporal database for the Kenya-Tanzania borderlands

description: This dataset contains key characteristics about the data described in the Data Descriptor Landscape Dynamics (landDX) an open-access spatial-temporal database for the Kenya-Tanzania borderlands. <br> Contents: <br> 1. human readable metadata summary table in CSV format 2. machine readable metadata file in JSON format
DOI: 10.6084/m9.figshare.3761562.v2109
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5281/zenodo.5866657
title: CL emission and absorption spectra of MoS2 pyramids

description: Cathodoluminescence spectra of MoS2 pyramid on sapphire substrate. Extensive experimental data used for the publication: https://doi.org/10.1039/D1NR06041D "Excitonic absorption and defect related emission in three-dimensional MoS2 pyramids" In the file the maps with the different areas highlighted. To each area corresponds an average spectrum.
DOI: 10.5281/zenodo.5866578
title: CL emission and absorption spectra of MoS2 pyramids

description: Cathodoluminescence spectra of MoS2 pyramid on sapphire substrate. Extensive experimental data used for the publication: https://doi.org/10.1039/D1NR06041D "Excitonic absorption and defect related emission in three-dimensional MoS2 pyramids" In the file the maps with the different areas highlighted. To each area corresponds an average spectrum.
DOI: 10.25345/c5ss2b
title: MassIVE MSV000088693 - GNPS Burkholderia thailandensis-exposed Murine Airway Epithelial and Murine Macrophage Cells and Monocultures
title: Extraction samples of murine airways epithelial LA-4 cells and murine macrophage RAW264.7 cells cultures exposed to different amounts of B. thailandensis for varying periods of time. Extracts of the adherent cells and their respective conditioned media were analyzed with LC-MS/MS to identify compounds detected within the aforementioned samples. Included are extracts of B. thailandensis monocultures, B. thailandensis-exposed LA-4 and RAW264.7 mammalian cells, and LA-4 and RAW264.7 unexposed monocultures.
DOI: 10.17632/bftj5gpz52.1
title: Stress rate of two-step relaxation results

description: Stress rate of two-step relaxation results
DOI: 10.17632/g2zw6r492g.1
title: Online Self-regulated Learning and Academic Procrastination 30% Data _MA

description: This study investigates the relationship between online self-regulated learning and academic procrastination, the mediating effect of attention control, and the moderating effect of peer support. The study analyzes and processes the questionnaire data of the participants, excluding questionnaires with identical answers and contradictory choices, therefore it generated 1149 valid responses. This provides 30% of the study data.
DOI: 10.17632/853zx83gnt.1
title: A study of Li et al

description: Coronavirus disease 2019 (COVID-19) represents a systemic disease that may cause severe metabolic complications in multiple tissues including liver, kidney and cardiovascular system. However, the underlying mechanism and optimal treatment remain elusive. Our study shows that impairment of ACE2 pathway is a key factor linking virus infection to its secondary metabolic sequelae. By using structure-based high throughput virtual screening and Connectivity Map database, followed with experimental validations, we identify imatinib, methazolamide and harpagoside as direct enzymatic activators of ACE2. Imatinib and methazolamide remarkably improve metabolic perturbations in vivo in an ACE2-dependent manner under insulin-resistant state and SARS-CoV-2-infected state. Moreover, the viral entry is directly inhibited by these three compounds due to allosteric inhibition of ACE2 binding to spike protein on SARS-CoV-2. Taken together, our study shows that enzymatic activation of ACE2 via imatinib, methazolamide or harpagoside may be a conceptually new strategy to treat metabolic sequelae of COVID-19.
DOI: 10.17632/9dx23j5d64.3
title: Dataset for "Automated interpretation of the coronary angioscopy with deep convolutional neural networks"

description: Raw data, generated images and python scripts to reproduce the results in our research paper: Automated interpretation of coronary angioscopy with deep convolutional neural networks.
DOI: 10.17632/gpw4yt3bv2.3
title: SIR Model NWS

description: The research explores the dynamics of COVID-19 outbreak in a conflict-affected area, Northwest Syria NWS, from July 2020 to March 2021 using the SIR model. The model was adjusted by the factor of "using face masks" to explore the changes in the outbreak dynamics based on the Ordinary Differential Equation of SIR and to verify the impact of using face masks on controlling and minimizing the transmission rates of the disease. Our findings indicate that applying the SIR model without considering available preventive measures might lead to overestimated figures regarding the number of infected cases. However, when adjusting the model with the factor of "wearing face masks" the resultant figures and number in terms of the number of infected cases were more acceptable and realistic. The research adds information on applying the SIR model after considering a preventive measure "face masks" which is the most viable and applicable measure in emergency settings.