cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13826940
title: Early pyroxene crystallisation deep below mid-ocean ridges: Supplementary data of gabbro phase mapping

description: The data repository contains part of the original microscopy imagery datasets from optical microscopy, electron microscopy backscattered electron (SEM-BSE), and Synchrotron X-ray fluorescence microscopy (XFM) experiments presented in Ubide et al. (2025) 'Early pyroxene crystallisation deep below mid-ocean ridges' by Teresa Ubide*, David T Murphy, Robert B Emo, Michael Jones, Marco Acevedo Zamora, and Balz S Kamber

Specifically, it includes the QuPath software (Bankhead et al., 2017) project including rock (mid-ocean ridge olivine gabbro) thin sections 81-R5w and 80-R6w. The project contains the semantic image segmentation outputs generated with the Pixel Classifier and MatLab script described in Acevedo Zamora et al. 2023 (see code repository).

Sample 80-R6w was segmented using image annotations in QuPath and an input comprising a false-colour Cr-Ti-Ca XFM image, cross-polarised light maximum intensity (XPL-max), and plane-polarised light (PPL-0 degrees) photomicrographs.

Similarly, Sample 81-R5w used a false-colour Cr-Ti-Ca XFM image, deep sparse autoencoder image representation of XFM (after Acevedo Zamora et al., 2024), cross-polarised light (XPL-0 degrees), plane-polarised light (PPL-0 degrees) photomicrographs, and recoloured SEM-BSE (after Acevedo Zamora et al. 2023). 

The segmentation of both samples provided a conservative estimate of the locations of relict clinopyroxene cores (~4% volume of cpx mask), mantles, and rims in a similar phase map colour scheme for better comparison.

If there are questions regarding the utilisation of the data, contact Marco Acevedo (marco.acevedozamora@qut.edu.au ; maaz.geologia@gmail.com).
DOI: 10.5281/zenodo.13826941
title: Early pyroxene crystallisation deep below mid-ocean ridges: Supplementary data of gabbro phase mapping

description: The data repository contains part of the original microscopy imagery datasets from optical microscopy, electron microscopy backscattered electron (SEM-BSE), and Synchrotron X-ray fluorescence microscopy (XFM) experiments presented in Ubide et al. (2025) 'Early pyroxene crystallisation deep below mid-ocean ridges' by Teresa Ubide*, David T Murphy, Robert B Emo, Michael Jones, Marco Acevedo Zamora, and Balz S Kamber

Specifically, it includes the QuPath software (Bankhead et al., 2017) project including rock (mid-ocean ridge olivine gabbro) thin sections 81-R5w and 80-R6w. The project contains the semantic image segmentation outputs generated with the Pixel Classifier and MatLab script described in Acevedo Zamora et al. 2023 (see code repository).

Sample 80-R6w was segmented using image annotations in QuPath and an input comprising a false-colour Cr-Ti-Ca XFM image, cross-polarised light maximum intensity (XPL-max), and plane-polarised light (PPL-0 degrees) photomicrographs.

Similarly, Sample 81-R5w used a false-colour Cr-Ti-Ca XFM image, deep sparse autoencoder image representation of XFM (after Acevedo Zamora et al., 2024), cross-polarised light (XPL-0 degrees), plane-polarised light (PPL-0 degrees) photomicrographs, and recoloured SEM-BSE (after Acevedo Zamora et al. 2023). 

The segmentation of both samples provided a conservative estimate of the locations of relict clinopyroxene cores (~4% volume of cpx mask), mantles, and rims in a similar phase map colour scheme for better comparison.

If there are questions regarding the utilisation of the data, contact Marco Acevedo (marco.acevedozamora@qut.edu.au ; maaz.geologia@gmail.com).
DOI: 10.15156/bio/sh1408518.10fu
title: SH1408518.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408522.10fu
title: SH1408522.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408527.10fu
title: SH1408527.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408530.10fu
title: SH1408530.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408536.10fu
title: SH1408536.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408538.10fu
title: SH1408538.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408540.10fu
title: SH1408540.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1408541.10fu
title: SH1408541.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.z29qx3
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Isoglossa origanoides (Nees) S.Moore"
 ]
}

 The dataset includes 57 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033792-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z49va7
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Vultur gryphus Linnaeus, 1758",
 "Year 2019-2021"
 ]
}

 The dataset's 1 records were derived from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0230807-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du0ghk
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is (Table 1) Proportion of Toxoplasma gondii seropositive arctic foxes (Alopex lagopus) by age group and geographic area"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054573-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y7fbxy
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Impatiens linghziensis Y.L.Chen"
 ]
}

 The dataset includes 5 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033784-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mzkewd
title: Occurrence Download

description: A dataset containing 48222 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 {
 "or" : [
 "DatasetKey is Computarización y actualización de la curación de la Colección de Lepidóptera del Museo de Zoología Alfonso L. Herrera y su base de datos MARIPOSA. FASE I",
 "DatasetKey is iNaturalist Research-grade Observations",
 "DatasetKey is Diversidad y distribución de las mariposas (Rhopalocera: papilionoidea) en la región occidental del estado de Morelos",
 "DatasetKey is Fortalecimiento de las colecciones de ECOSUR. Primera fase (Lepidoptera Chetumal)",
 "DatasetKey is Lepidoptera (Rhopalocera y Heterocera) de áreas prioritarias para la conservación en la Península de Yucatán, con registros de adultos y estados inmaduros",
 "DatasetKey is CNIN/Lepidoptera",
 "DatasetKey is Natural History Museum (London) Collection Specimens"
 ]
 },
 "TaxonKey is Papilionidae"
 ]
}

 The dataset includes 48222 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0371890-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.46yqnd
title: Occurrence Download

description: A dataset containing 5896 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Hypophthalmichthys molitrix (Valenciennes, 1844)"
 ]
}

 The dataset includes 5896 records from 107 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0097129-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tfq3yz
title: Occurrence Download

description: A dataset containing 23139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lycorma delicatula (White, 1845)"
 ]
}

 The dataset includes 23139 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004168-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wsee82
title: Occurrence Download

description: A dataset containing 2923 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pelophylax fukienensis (Pope, 1929)"
 ]
}

 The dataset includes 2923 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041080-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vv9b9
title: Occurrence Download

description: A dataset containing 61 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.33_1",
 "TaxonKey is Rhagonycha fulva (Scopoli, 1763)"
 ]
}

 The dataset includes 61 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000422-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6mzcj4
title: Occurrence Download

description: A dataset containing 193 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tantilla calamarina Cope, 1866"
 ]
}

 The dataset includes 193 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003469-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wd932j
title: Occurrence Download

description: A dataset containing 340646 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-105.28913 20.59483,-105.4476 20.45991,-105.72132 20.44641,-105.54845 20.1762,-105.33235 19.82423,-104.95779 19.40355,-104.59763 19.13156,-104.32391 19.1996,-103.79088 19.33559,-104.17985 19.55295,-104.48238 19.86488,-104.66966 20.27083,-105.28913 20.59483))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is one of (Animalia, Tracheophyta, Aves, Testudines, Squamata, Crocodylia, Amphibia)"
 ]
}

 The dataset includes 340646 records from 479 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0141180-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gwxypy
title: Occurrence Download

description: A dataset containing 7574 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Trichonephila clavata (L.Koch, 1878)"
 ]
}

 The dataset includes 7574 records from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001053-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5vfuu
title: Occurrence Download

description: A dataset containing 1922 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidoscelis communis (Cope, 1878)"
 ]
}

 The dataset includes 1922 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033402-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wqvt9
title: Occurrence Download

description: A dataset listing the 11 species recorded in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Porites astreoides Lamarck, 1816"
 ]
}

 The dataset's 11 records were derived from 144 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0074063-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7x7sex
title: Occurrence Download

description: A dataset containing 726993 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Sorex ornatus Merriam, 1895, Dipodomys heermanni LeConte, 1853, Microtus californicus (Peale, 1848), Reithrodontomys megalotis (Baird, 1857), Chaetodipus californicus (Merriam, 1889), Neotoma fuscipes Baird, 1857, Neotoma macrotis Thomas, 1893, Peromyscus truei (Shufeldt, 1885), Sciurus griseus Ord, 1818, Dipodomys agilis Gambel, 1848, Tamias merriami J.A.Allen, 1889, Peromyscus boylii (Baird, 1855), Thomomys bottae (Eydoux & Gervais, 1836), Otospermophilus beecheyi (Richardson, 1829), Peromyscus maniculatus (Wagner, 1845), Sorex trowbridgii Baird, 1857, Tamias quadrimaculatus Gray, 1867, Sorex vagrans Baird, 1857, Tamias senex J.A.Allen, 1890, Tamiasciurus douglasii (Bachman, 1839), Zapus princeps J.A.Allen, 1893, Microtus montanus (Peale, 1848), Microtus longicaudus (Merriam, 1888), Thomomys monticola J.A.Allen, 1893, Neotoma cinerea (Ord, 1815), Tamias speciosus Merriam, 1890, Tamias amoenus J.A.Allen, 1890, Sorex palustris Richardson, 1828, Marmota flaviventris (Audubon & Bachman, 1841), Urocitellus beldingi (Merriam, 1888), Callospermophilus lateralis (Say, 1823), Sorex monticolus Merriam, 1890, Ochotona princeps (Richardson, 1828), Tamias alpinus Merriam, 1893)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 726993 records from 248 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0054023-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7yzasp
title: Occurrence Download

description: A dataset containing 1000 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Imantodes gemmistratus (Cope, 1861)"
 ]
}

 The dataset includes 1000 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053570-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3dhc4k
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Specimen, Human Observation, Living Specimen)",
 "Geometry POLYGON((46.9286 35.56304,56.57049 35.56304,56.57049 40.46296,46.9286 40.46296,46.9286 35.56304))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Ilex spinigera (Loes.) Loes."
 ]
}

 The dataset includes 6 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0081205-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmckt3
title: Occurrence Download

description: A dataset containing 34258 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Animal Sound Archive"
 ]
}

 The dataset includes 34258 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0023698-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.