cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.5035748
title: Adaptation of the Tinnitus Handicap Inventory into Polish and its testing on a clinical population of tinnitus sufferers

description: <i>Objective</i>: To describe how the Tinnitus Handicap Inventory (THI) was translated into Polish (THI-POL) and to present psychometric data on how well it performed in a clinical population of tinnitus sufferers. <i>Design</i>: The original version of THI was adapted into Polish. The reliability of THI-POL was investigated using test–retest, Cronbach’s alpha, endorsement rate and item–total correlation. Construct validity and convergent validity were also assessed based on confirmatory factor analysis, inter-item correlation and Pearson product-moment correlations using subscale A (Tinnitus) of the Tinnitus and Hearing Survey (THS-POL); divergent validity was checked using subscale B (Hearing) of THS-POL. <i>Study sample</i>: A group of 167 adults filled in THI-POL twice over their three-day hospitalisation period. <i>Results</i>: Test–retest reliability for the total THI-POL scores was strong (<i>r</i> = 0.91). Cronbach’s alpha coefficient for the total score was high (<i>r</i> = 0.95), confirming the questionnaire’s stability. Confirmatory factor analysis (CFA) and inter-item correlation did not confirm the three-factor model. Convergent validity from the Tinnitus subscale of THS showed a positive strong (<i>r</i> = 0.75) correlation. Divergent validity showed only a moderate correlation. All analyses were statistically significant (<i>p</i> &lt; 0.01). <i>Conclusions</i>: THI-POL is a valid and reliable self-administered tool, which allows the overall tinnitus handicap of Polish-speaking patients to be effectively assessed.
DOI: 10.6084/m9.figshare.5035748.v1
title: Adaptation of the Tinnitus Handicap Inventory into Polish and its testing on a clinical population of tinnitus sufferers

description: <i>Objective</i>: To describe how the Tinnitus Handicap Inventory (THI) was translated into Polish (THI-POL) and to present psychometric data on how well it performed in a clinical population of tinnitus sufferers. <i>Design</i>: The original version of THI was adapted into Polish. The reliability of THI-POL was investigated using test–retest, Cronbach’s alpha, endorsement rate and item–total correlation. Construct validity and convergent validity were also assessed based on confirmatory factor analysis, inter-item correlation and Pearson product-moment correlations using subscale A (Tinnitus) of the Tinnitus and Hearing Survey (THS-POL); divergent validity was checked using subscale B (Hearing) of THS-POL. <i>Study sample</i>: A group of 167 adults filled in THI-POL twice over their three-day hospitalisation period. <i>Results</i>: Test–retest reliability for the total THI-POL scores was strong (<i>r</i> = 0.91). Cronbach’s alpha coefficient for the total score was high (<i>r</i> = 0.95), confirming the questionnaire’s stability. Confirmatory factor analysis (CFA) and inter-item correlation did not confirm the three-factor model. Convergent validity from the Tinnitus subscale of THS showed a positive strong (<i>r</i> = 0.75) correlation. Divergent validity showed only a moderate correlation. All analyses were statistically significant (<i>p</i> &lt; 0.01). <i>Conclusions</i>: THI-POL is a valid and reliable self-administered tool, which allows the overall tinnitus handicap of Polish-speaking patients to be effectively assessed.
DOI: 10.6084/m9.figshare.5035730
title: Annotations

description: 18 sequence annotations<br>
DOI: 10.6084/m9.figshare.5035709
title: Data for "Honeybee spillover reshuffles pollinator diets and affects plant reproductive success"

description: Data for "Honeybee spillover reshuffles pollinator diets and affects plant reproductive success".
DOI: 10.6084/m9.figshare.5035703
title: Idiotope prediction dataset

description: This dataset contains deduced amino acid IGHV sequences from B cells of 11 MS and 6 OIND patients (Johansen et al), collected from blood and CSF. Immunosequencing by Adaptive Biotechnologies using the ImmunoSeq survey level assay. Non-productive sequences were removed. The nucleotide sequences were translated to amino acid sequences using IMGT/High V-Quest (Alamyar et al). IGHV sequences deduced from transcripts comprising more than 0.5% of the reads were designated "highly transcribed".
DOI: 10.6084/m9.figshare.5035730.v1
title: Annotations

description: 18 sequence annotations<br>
DOI: 10.6084/m9.figshare.5035703.v2
title: Idiotope prediction dataset

description: This dataset contains deduced amino acid IGHV sequences from B cells of 11 MS and 6 OIND patients (Johansen et al), collected from blood and CSF. Immunosequencing by Adaptive Biotechnologies using the ImmunoSeq survey level assay. Non-productive sequences were removed. The nucleotide sequences were translated to amino acid sequences using IMGT/High V-Quest (Alamyar et al). IGHV sequences deduced from transcripts comprising more than 0.5% of the reads were designated "highly transcribed".
DOI: 10.6084/m9.figshare.5035703.v1
title: Idiotope prediction dataset

description: This dataset contains deduced amino acid IGHV sequences from B cells of 11 MS and 6 OIND patients (Johansen et al), collected from blood and CSF. Immunosequencing by Adaptive Biotechnologies using the ImmunoSeq survey level assay. Non-productive sequences were removed. The nucleotide sequences were translated to amino acid sequences using IMGT/High V-Quest (Alamyar et al). IGHV sequences deduced from transcripts comprising more than 0.5% of the reads were designated "highly transcribed".
DOI: 10.6084/m9.figshare.5035658
title: Concatenation-based species trees

description: Concatenation-based species trees in newick format. Each data set typically has four trees, including the previously reported tree, as well as the trees inferred by RAxML, IQ-TREE, and FastTree. Trees generated by independent RAxML searches (i.e. from independent starting trees) and by replicate IQ-TREE analyses are also included.
DOI: 10.6084/m9.figshare.5035646
title: Single-gene trees

description: Single-gene trees in newick format. Each data set has at least six sets of trees, five of which were produced by the five examined strategies, and the sixth one corresponded to the "best-observed" trees. Some data sets also have an additional set of trees consisting of previously reported trees from the original studies. For protein data sets, best-fit models used in phylogenetic analyses are also provided for all alignments.
DOI: 10.6084/m9.figshare.5035655
title: Coalescent-based species trees

description: Coalescent-based species trees in newick format. Each data set has at least six coalescent-based species trees, five of which were based on single-gene trees produced by the five examined strategies, and the sixth one was based on the “best-observed” trees.
DOI: 10.6084/m9.figshare.5035658.v1
title: Concatenation-based species trees

description: Concatenation-based species trees in newick format. Each data set typically has four trees, including the previously reported tree, as well as the trees inferred by RAxML, IQ-TREE, and FastTree. Trees generated by independent RAxML searches (i.e. from independent starting trees) and by replicate IQ-TREE analyses are also included.
DOI: 10.6084/m9.figshare.5035631
title: PowerPoint Slides for: Racial and Ethnic Differences in Mortality Associated with Serum Potassium in a Large Hemodialysis Cohort

description: <i>Background:</i> Hyperkalemia is observed in chronic kidney disease patients and may be a risk factor for life-threatening arrhythmias and death. Race/ethnicity may be important modifiers of the potassium-mortality relationship in maintenance hemodialysis (MHD) patients given that potassium intake and excretion vary among minorities. <i>Methods:</i> We examined racial/ethnic differences in baseline serum potassium levels and all-cause and cardiovascular mortality using Cox proportional hazard models and restricted cubic splines in a cohort of 102,241 incident MHD patients. Serum potassium was categorized into 6 groups: ≤3.6, &gt;3.6 to ≤4.0, &gt;4.0 to ≤4.5 (reference), &gt;4.5 to ≤5.0, &gt;5.0 to ≤5.5, and &gt;5.5 mEq/L. Models were adjusted for case-mix and malnutrition-inflammation cachexia syndrome (MICS) covariates. <i>Results:</i>The cohort was composed of 50% whites, 34% African-Americans, and 16% Hispanics. Hispanics tended to have the highest baseline serum potassium levels (mean ± SD: 4.58 ± 0.55 mEq/L). Patients in our cohort were followed for a median of 1.3 years (interquartile range 0.6-2.5). In our cohort, associations between higher potassium (&gt;5.5 mEq/L) and higher mortality risk were observed in African-American and whites, but not Hispanic patients in models adjusted for case-mix and MICS covariates. While in Hispanics only, lower serum potassium (&lt;3.6 mEq/L) levels were associated with higher mortality risk. Similar trends were observed for cardiovascular mortality. <i>Conclusions:</i> Higher potassium levels were associated with higher mortality risk in white and African-American MHD patients, whereas lower potassium levels were associated with higher death risk in Hispanics. Further studies are needed to determine the underlying mechanisms for the differential association between potassium and mortality across race/ethnicity.
DOI: 10.6084/m9.figshare.5035628
title: Supermatrices

description: Supermatrices as the corresponding partition model files used for concatenation-based species tree inferences.
DOI: 10.6084/m9.figshare.5035631.v1
title: PowerPoint Slides for: Racial and Ethnic Differences in Mortality Associated with Serum Potassium in a Large Hemodialysis Cohort

description: <i>Background:</i> Hyperkalemia is observed in chronic kidney disease patients and may be a risk factor for life-threatening arrhythmias and death. Race/ethnicity may be important modifiers of the potassium-mortality relationship in maintenance hemodialysis (MHD) patients given that potassium intake and excretion vary among minorities. <i>Methods:</i> We examined racial/ethnic differences in baseline serum potassium levels and all-cause and cardiovascular mortality using Cox proportional hazard models and restricted cubic splines in a cohort of 102,241 incident MHD patients. Serum potassium was categorized into 6 groups: ≤3.6, &gt;3.6 to ≤4.0, &gt;4.0 to ≤4.5 (reference), &gt;4.5 to ≤5.0, &gt;5.0 to ≤5.5, and &gt;5.5 mEq/L. Models were adjusted for case-mix and malnutrition-inflammation cachexia syndrome (MICS) covariates. <i>Results:</i>The cohort was composed of 50% whites, 34% African-Americans, and 16% Hispanics. Hispanics tended to have the highest baseline serum potassium levels (mean ± SD: 4.58 ± 0.55 mEq/L). Patients in our cohort were followed for a median of 1.3 years (interquartile range 0.6-2.5). In our cohort, associations between higher potassium (&gt;5.5 mEq/L) and higher mortality risk were observed in African-American and whites, but not Hispanic patients in models adjusted for case-mix and MICS covariates. While in Hispanics only, lower serum potassium (&lt;3.6 mEq/L) levels were associated with higher mortality risk. Similar trends were observed for cardiovascular mortality. <i>Conclusions:</i> Higher potassium levels were associated with higher mortality risk in white and African-American MHD patients, whereas lower potassium levels were associated with higher death risk in Hispanics. Further studies are needed to determine the underlying mechanisms for the differential association between potassium and mortality across race/ethnicity.
DOI: 10.6084/m9.figshare.5035646.v1
title: Single-gene trees

description: Single-gene trees in newick format. Each data set has at least six sets of trees, five of which were produced by the five examined strategies, and the sixth one corresponded to the "best-observed" trees. Some data sets also have an additional set of trees consisting of previously reported trees from the original studies. For protein data sets, best-fit models used in phylogenetic analyses are also provided for all alignments.
DOI: 10.6084/m9.figshare.5035655.v1
title: Coalescent-based species trees

description: Coalescent-based species trees in newick format. Each data set has at least six coalescent-based species trees, five of which were based on single-gene trees produced by the five examined strategies, and the sixth one was based on the “best-observed” trees.
DOI: 10.6084/m9.figshare.5035625
title: Single-gene alignments

description: Alignments used for single-gene tree inference.
DOI: 10.6084/m9.figshare.5035628.v1
title: Supermatrices

description: Supermatrices as the corresponding partition model files used for concatenation-based species tree inferences.
DOI: 10.6084/m9.figshare.5035613
title: PowerPoint Slides for: Right TraC™ Post-Hospitalization Care Transitions Program to Reduce Readmissions for Hemodialysis Patients

description: <i>Background:</i> Hemodialysis (HD) patients have high hospitalization rates. This nonrandomized trial tested the effect of a bundle of renal-specific “Right TraC™” strategies on 30-day all-cause readmission rates and, secondarily, 90-day readmissions and overall admissions among HD patients. <i>Methods:</i> Twenty-six Fresenius clinics in West Virginia, Ohio, and Kentucky participated in the interventions. Eighteen matched clinics served as controls; intervention clinics also served as their own controls. We deployed the intervention in 3 incremental phases focused on patient information exchange, post-hospital follow-up, and telephonic case management. Thirty-day hospital readmissions per patient year (ppy) were calculated by dividing the total number of readmissions within 30 days of index admission by the total number of patient-years in baseline (2012) and remeasurement (2014) periods. We also compared readmission rates from 2010 to 2015. We used repeated measures Poisson regression to compare outcomes between groups and time periods. <i>Results:</i> From 2012 to 2014, 30-day all-cause readmissions ppy declined for Right TraC clinics (from 0.88 to 0.66 [<i>p</i> &lt; 0.001]; for controls, from 0.73 to 0.61 [<i>p</i> = 0.16]). Difference in change between groups was nonsignificant (<i>p</i> = 0.26). Overall admissions ppy declined: for Right TraC clinics from 2.51 to 1.97 (<i>p</i> &lt; 0.001); for controls from 2.14 to1.92 (<i>p</i> = 0.21); difference in change between groups was significant (<i>p</i> = 0.01). For 2010, 2011, and 2012, Right TraC clinic 30-day readmissions ppy were unchanged: 0.89, 1.00, 0.88 (<i>p</i> = 0.61 and <i>p</i> = 0.49); they declined to 0.66 (<i>p</i> &lt; 0.001) in 2014 (intervention year); rose to 0.70 (<i>p</i> = 0.06) in 2015 (interventions discontinued). <i>Conclusion:</i> We conclude that Right TraC interventions may have been helpful in reducing hospital readmission rates.
DOI: 10.6084/m9.figshare.5035613.v1
title: PowerPoint Slides for: Right TraC™ Post-Hospitalization Care Transitions Program to Reduce Readmissions for Hemodialysis Patients

description: <i>Background:</i> Hemodialysis (HD) patients have high hospitalization rates. This nonrandomized trial tested the effect of a bundle of renal-specific “Right TraC™” strategies on 30-day all-cause readmission rates and, secondarily, 90-day readmissions and overall admissions among HD patients. <i>Methods:</i> Twenty-six Fresenius clinics in West Virginia, Ohio, and Kentucky participated in the interventions. Eighteen matched clinics served as controls; intervention clinics also served as their own controls. We deployed the intervention in 3 incremental phases focused on patient information exchange, post-hospital follow-up, and telephonic case management. Thirty-day hospital readmissions per patient year (ppy) were calculated by dividing the total number of readmissions within 30 days of index admission by the total number of patient-years in baseline (2012) and remeasurement (2014) periods. We also compared readmission rates from 2010 to 2015. We used repeated measures Poisson regression to compare outcomes between groups and time periods. <i>Results:</i> From 2012 to 2014, 30-day all-cause readmissions ppy declined for Right TraC clinics (from 0.88 to 0.66 [<i>p</i> &lt; 0.001]; for controls, from 0.73 to 0.61 [<i>p</i> = 0.16]). Difference in change between groups was nonsignificant (<i>p</i> = 0.26). Overall admissions ppy declined: for Right TraC clinics from 2.51 to 1.97 (<i>p</i> &lt; 0.001); for controls from 2.14 to1.92 (<i>p</i> = 0.21); difference in change between groups was significant (<i>p</i> = 0.01). For 2010, 2011, and 2012, Right TraC clinic 30-day readmissions ppy were unchanged: 0.89, 1.00, 0.88 (<i>p</i> = 0.61 and <i>p</i> = 0.49); they declined to 0.66 (<i>p</i> &lt; 0.001) in 2014 (intervention year); rose to 0.70 (<i>p</i> = 0.06) in 2015 (interventions discontinued). <i>Conclusion:</i> We conclude that Right TraC interventions may have been helpful in reducing hospital readmission rates.
DOI: 10.6084/m9.figshare.5035604
title: PowerPoint Slides for: A Comparison between Intermittent Peritoneal Dialysis and Automatic Peritoneal Dialysis on Urgent Peritoneal Dialysis

description: <i>Background:</i> Urgent-start dialysis is a major problem for incident dialysis population. Urgent start on hemodialysis is associated with an increased risk of infectious or mechanical complications, and its mortality is equal to or higher than that of urgent start on peritoneal dialysis (PD). However, compared to patients starting PD in a planned setting, those on urgent-started PD have an increased risk of mechanical complications and lower technique survival. <i>Methods:</i> In this study, 101 adult incident dialysis patients (≥18 years old) who underwent Tenckhoff catheter implantation were enrolled. All of the patients were grouped according to the urgent PD mode: the intermittent PD (IPD) or automatic PD (APD) group, and patients were followed for 1 year. The paired or independent <i>t</i> test was used to analyze the change of laboratory variables. Pearson chi-square test was applied to compare the short outcome between the 2 groups. <i>Results:</i> When PD was treated for 7 days and 1 month, the APD group has the lower serum potassium and phosphorus levels than the IPD group. The incidence of catheter dysfunction was significantly lower in the APD group. The morbidity of infection associated with PD in the first year was lower in the APD group despite no significant difference existing. The technique survival and patient survival rate have no evident difference between the 2 groups. <i>Conclusion:</i> Compared to IPD, urgent start on APD could reduce the risk of mechanical complication, which could be considered a gentle, safe, and feasible alternative to urgent start on IPD.
DOI: 10.6084/m9.figshare.5035625.v1
title: Single-gene alignments

description: Alignments used for single-gene tree inference.
DOI: 10.6084/m9.figshare.5035220
title: PartitionFinder analysis

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035211
title: Hypothesis testing associated with table 2

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035214
title: Maximum Likelihood tree (figure 2)

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035220.v1
title: PartitionFinder analysis

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035208
title: MrBayes analysis associated with Figure 5

description: Data associated with the tree building process associated with Figure 5
DOI: 10.6084/m9.figshare.5035211.v1
title: Hypothesis testing associated with table 2

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035214.v1
title: Maximum Likelihood tree (figure 2)

description: data files and scripts needed to perform analyses
DOI: 10.6084/m9.figshare.5035202
title: Dating Based on Patristic Distances (TDRP) figure 5

description: Files associated with figure 5Unziprun the python scriptrun the r script for each starting virus separately (i.e. PePV1 and CPV6)
DOI: 10.6084/m9.figshare.5035205
title: BEAST 2 analysis for figure 4

description: Data associated with figure 4
DOI: 10.6084/m9.figshare.5035208.v1
title: MrBayes analysis associated with Figure 5

description: Data associated with the tree building process associated with Figure 5
DOI: 10.6084/m9.figshare.5035178
title: freq1385mhz.zip

description: Raw 4 x 4 MIMO radio IQ data taken between Scripps Pier and Camp Pendleton, Southern California from Jan 22 - Feb 09, 2016. Each transmitter sent length 8192 Zadoff Chu orthogonal waveforms at 1.385 GHz. Data is down converted and has sample frequency 1.25 MHz.
DOI: 10.6084/m9.figshare.5035205.v1
title: BEAST 2 analysis for figure 4

description: Data associated with figure 4
DOI: 10.6084/m9.figshare.5035130
title: Efficiency of genomic prediction of non-assessed single crosses

description: Data files used in the study.<br>
DOI: 10.6084/m9.figshare.5035175
title: Heagy et al, 2017 - 1D FDEM and TDEM Inversions

description: Here, we perform a 1D inversion using both the frequency and time domaincodes. The forward simulations are conducted on a cylindrically symmetricmesh. The source is a point magnetic dipole source.<br>This example is used in the paper<br>Heagy, L.J., R. Cockett, S. Kang, G.K. Rosenkjaer, D.W. Oldenburg,2017 (in review), A framework for simulation and inversion in electromagnetics.Computers & Geosciences
DOI: 10.6084/m9.figshare.5035202.v1
title: Dating Based on Patristic Distances (TDRP) figure 5

description: Files associated with figure 5Unziprun the python scriptrun the r script for each starting virus separately (i.e. PePV1 and CPV6)
DOI: 10.6084/m9.figshare.5035178.v1
title: freq1385mhz.zip

description: Raw 4 x 4 MIMO radio IQ data taken between Scripps Pier and Camp Pendleton, Southern California from Jan 22 - Feb 09, 2016. Each transmitter sent length 8192 Zadoff Chu orthogonal waveforms at 1.385 GHz. Data is down converted and has sample frequency 1.25 MHz.
DOI: 10.6084/m9.figshare.5034923
title: Supplementray Table 5.xlsx

description: Primers used for RT-PCR
DOI: 10.6084/m9.figshare.5034932
title: Supplementary Table 2.xlsx

description: RNASeq dataset from control (n=5) and PKP2-cKO (n=4) hearts at 21 dpi.
DOI: 10.6084/m9.figshare.5035130.v1
title: Efficiency of genomic prediction of non-assessed single crosses

description: Data files used in the study.<br>
DOI: 10.6084/m9.figshare.5035175.v1
title: Heagy et al, 2017 - 1D FDEM and TDEM Inversions

description: Here, we perform a 1D inversion using both the frequency and time domaincodes. The forward simulations are conducted on a cylindrically symmetricmesh. The source is a point magnetic dipole source.<br>This example is used in the paper<br>Heagy, L.J., R. Cockett, S. Kang, G.K. Rosenkjaer, D.W. Oldenburg,2017 (in review), A framework for simulation and inversion in electromagnetics.Computers & Geosciences
DOI: 10.6084/m9.figshare.5034896
title: Does chromosomal change restrict gene flow between house mouse populations (Mus musculus domesticus)? Evidence from microsatellite polymorphisms

description: Full dataset on microsatellite loci and alleles in house mice used for analyses. <br>
DOI: 10.6084/m9.figshare.5035130.v3
title: Efficiency of genomic prediction of non-assessed single crosses

description: Data files used in the study.<br>
DOI: 10.6084/m9.figshare.5034896.v1
title: Does chromosomal change restrict gene flow between house mouse populations (Mus musculus domesticus)? Evidence from microsatellite polymorphisms

description: Full dataset on microsatellite loci and alleles in house mice used for analyses. <br>
DOI: 10.6084/m9.figshare.5034923.v1
title: Supplementray Table 5.xlsx

description: Primers used for RT-PCR
DOI: 10.6084/m9.figshare.5034932.v1
title: Supplementary Table 2.xlsx

description: RNASeq dataset from control (n=5) and PKP2-cKO (n=4) hearts at 21 dpi.
DOI: 10.6084/m9.figshare.5035130.v2
title: Efficiency of genomic prediction of non-assessed single crosses

description: Data files used in the study.<br>