cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12382619.v1
title: Adult emergence patterns and body size of two mayfly species of <i>Isonychia</i> Eaton, 1871 from Hokkaido, Japan

description: We conducted an emergence survey of <i>Isonychia</i> (<i>Isonychia</i>) <i>japonica</i> Ulmer, 1919 and <i>Isonychia</i> (<i>Prionoides</i>) <i>shima</i> Matsumura, 1931 at four sites in the Izari-gawa River system, Hokkaido, Japan in 2015 and 2016 to investigate differences in emergence seasons between the species. The present study showed that <i>I.</i> (<i>I.</i>) <i>japonica</i> was widely distributed from up- to down-stream with abundant numbers in middle-stream, while <i>I.</i> (<i>P.</i>) <i>shima</i> was mostly distributed up-stream. The emergence season of <i>I.</i> (<i>I.</i>) <i>japonica</i> was longer than that of <i>I.</i> (<i>P.</i>) <i>shima</i>, but their emergence periods overlapped in August and early September, suggesting that their adults are not separated temporally. Body size comparison showed that, at the same sites, the emerged in August specimens of <i>I.</i> (<i>I.</i>) <i>japonica</i> were larger than those of <i>I.</i> (<i>P.</i>) <i>shima</i>.
DOI: 10.6084/m9.figshare.12382592
title: Danish political stance dataset

description: Data for automatically detecting the political stance towards various issues from a quote. Covers 898 quotes and a broad range of speakers. Captured during 2018.<br><br>Reference: Lehmann, R., & Derczynski, L. (2019). Political Stance in Danish. In Proceedings of the 22nd Nordic Conference on Computational Linguistics (pp. 197-207).
DOI: 10.6084/m9.figshare.12382610
title: TV2 Regionerne News Corpus

description: A corpus of about 50000 news articles in Danish, with full metadata, published on TV2 Regionerne between 2010 and 2020. Stored as multiple JSON files, one per article.<br>Licensed CC-BY. You must reference this Figshare entry if you use this data:<br>Leon Derczynski and Claus Ladefoged, "TV2 Regionerne News Corpus" (2020). doi:10.6084/m9.figshare.12382610 <br><br>See articles/README.md, articles/LICENSE.md and articles/DATASTATEMENT.md.<br>
DOI: 10.6084/m9.figshare.12382571
title: Table 1 SP. Quaternary tectonic and climate changes at the origin of travertine and calcrete in the eastern Betics (Almería region, SE Spain)

description: Table 1 SP: reproducibility of δ<sup>13</sup>C and δ<sup>18</sup>O of the NSB–18 internal standard.
DOI: 10.6084/m9.figshare.12382568
title: Table 2 SP. Quaternary tectonic and climate changes at the origin of travertine and calcrete in the eastern Betics (Almería region, SE Spain)

description: Table 2 SP: reproducibility of [U] and [Th].
DOI: 10.6084/m9.figshare.12382571.v1
title: Table 1 SP. Quaternary tectonic and climate changes at the origin of travertine and calcrete in the eastern Betics (Almería region, SE Spain)

description: Table 1 SP: reproducibility of δ<sup>13</sup>C and δ<sup>18</sup>O of the NSB–18 internal standard.
DOI: 10.6084/m9.figshare.12382559
title: BMM72H CCK8 2020.1.2.tmp.xls

description: BMM72H CCK8 2020
DOI: 10.6084/m9.figshare.12382559.v1
title: BMM72H CCK8 2020.1.2.tmp.xls

description: BMM72H CCK8 2020
DOI: 10.6084/m9.figshare.12382568.v1
title: Table 2 SP. Quaternary tectonic and climate changes at the origin of travertine and calcrete in the eastern Betics (Almería region, SE Spain)

description: Table 2 SP: reproducibility of [U] and [Th].
DOI: 10.6084/m9.figshare.12382496
title: Acute environmental temperature variation affects brain protein expression, anxiety and explorative behavior in adult zebrafish.

description: This work investigates the effect of a 4-day acute thermal treatment at 18 °C, 26 °C (control) and 34 °C on the nervous system of adult zebrafish (<i>Danio rerio</i>) by a multidisciplinary approach based on behavioural test and brain proteomic analysis. The behavioural variations induced by the thermal treatment were investigated by means of five different tests (novel tank diving, light and dark preference, social preference, mirror biting, Y-Maze) which are paradigms used on zebrafish for assessing anxiety, boldness, social preference, aggressiveness, and explorative behaviour, respectively. Proteomic data revealed that several proteins involved in energy metabolism, translation, protein synthesis, folding and degradation, cytoskeleton organization and synaptic vesiculation are differently regulated at the extreme temperatures. The results showed increased anxiety-like behaviour and the down regulation of the expression of proteins belonging to anxiety-related signalling pathways in zebrafish at 18 °C compared to those at 26 °C and 34 °C. Moreover, the treatment both at 18 °C and 34 °C alters the exploratory behaviour that appears not to be modulated by past experiences suggesting an impairment of cognitive abilities. The present study follows our previous works in which the effect of a 21-day chronic treatment at the same temperatures was investigated using the same experimental design, allowing to compare the effect of acute and chronic treatment on the nervous system of adult zebrafish.
DOI: 10.6084/m9.figshare.12382505
title: Experimental data.xlsx

description: Experimental data for the forecast of rupture
DOI: 10.6084/m9.figshare.12382418
title: SAM lexicon

description: This sentiment lexicon consists of Danish words with fine-grained polarity in the range of -2 to 2.<br><br>The lexicon is an extension and modification of Finn Årup Nielsen's.<br>Everything within this folder (Lexicon) is licensed under the Apache license, which can be read in the license file within this folder.<br>Reference: Mads Guldborg Kjeldgaard Kongsbak, Steffan Eybye Christensen, Lucas Høyberg Puvis de Chavannes, Peter Due Jensen. "Sentiment Analysis Multitool, SAM". 2019. Bachelor disseratation, IT University of Copenhagen.<br><br>
DOI: 10.6084/m9.figshare.12382397
title: SAM dataset

description: Sentiment Analysis Multitool. Danish Sentiment annotated dataset. This annotated data is meant to be used with supervised machine learning algorithms. The dataset was created specifically to classify sentences to the root comments of Danish political articles on social media. The dataset consists of 9008 sentences that are labelled with fine-grained polarity in the range from -2 to 2 (negative to postive). The quality of the fine-grained is not cross validated and is therefore subject to uncertainties; however, the simple polarity has been cross validated and therefore is considered to be more correct.<br><br>Reference: Mads Guldborg Kjeldgaard Kongsbak, Steffan Eybye Christensen, Lucas Høyberg Puvis de Chavannes, Peter Due Jensen. "Sentiment Analysis Multitool, SAM". 2019. Bachelor disseratation, IT University of Copenhagen.<br>
DOI: 10.6084/m9.figshare.12382418.v1
title: SAM lexicon

description: This sentiment lexicon consists of Danish words with fine-grained polarity in the range of -2 to 2.<br><br>The lexicon is an extension and modification of Finn Årup Nielsen's.<br>Everything within this folder (Lexicon) is licensed under the Apache license, which can be read in the license file within this folder.<br>Reference: Mads Guldborg Kjeldgaard Kongsbak, Steffan Eybye Christensen, Lucas Høyberg Puvis de Chavannes, Peter Due Jensen. "Sentiment Analysis Multitool, SAM". 2019. Bachelor disseratation, IT University of Copenhagen.<br><br>
DOI: 10.6084/m9.figshare.12382283
title: PEDV N interactiome _Label-Free.xlsx

description: Porcine epidemic diarrhea virus (PEDV) is the agent of PED which causes numerous economic losses for the swine industry each year. Till now, no effective vaccine or drugs are available to contain this disease. As a result, it is critical urgent to elucidate the PEDV interactome. The nucleocapsid (N) of PEDV plays a key role in viral replication. In this study, the N gene was cloned into pEGFP-C1 and the recombinant plasmid pEGFP-N was prepared. In order to obtain the interactome of N protein, the plasmids pEGFP-N and pEGFP-C1 were transfected in 293T and the cellular binding partners were pulled down using the GFP-trap. These proteins were identified by label-free MS. The results showed that approximately 1200 cellular proteins were initially identified and quantified, which represented both specific and nonspecific interactions. Under the criteria of more than 2 unique peptides, a false discovery rate (FDR) ≤ 1%and a p value &lt;0.05 for the t-test analysis, 147cellular potential proteins were identified (as listed in the table). <b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.12382268
title: corresponding data - factors influencing foraging efficiency in macaroni penguins

description: corresponding data for the manuscript factors influencing foraging efficiency in macaroni penguins
DOI: 10.6084/m9.figshare.12382274
title: Relationship between Substance Use and Socioeconomic Variables in Pennsylvania Adolescents: 2009–2017

description: <i>Purpose:</i> The goal of the current study is to analyze the substance use trends in Generation Z youth (in both middle and high school environments) and to determine if any correlation exists between substance use behaviors and demographic variables. <i>Methods:</i> Analysis is based on substance use data collected through the Pennsylvania Youth Survey (PAYS) from 2009 to 2017 and the 2016 US census data. <i>Results:</i> Our results suggest that substance use in Gen Z adolescents is mainly linked to alcohol, marijuana, cigarettes, smokeless tobacco, vaping, and narcotic prescription drugs. Alcohol is the most prevalent high-risk substance used by 12th grade students with 69.8% of students having consumed alcohol over their lifetime. Vaping is the next highly used substance with 28.9% of students in 12th grade having vaped 30 day prior to the survey. There is a significant correlation among adolescents between smoking cigarettes and using smokeless tobacco. A student using either alcohol, cigarettes or smokeless tobacco is highly likely to use the other two substances as well. Adolescents from counties with a high Caucasian population were at high risk for cigarette and smokeless tobacco use, while the opposite held true for counties with a high number of foreign-born persons or higher Asian or Hispanic populations. Higher median household incomes and higher adult education levels in a county were both protective factors against smokeless tobacco use. <i>Conclusions:</i> Results of the study suggest that students start experimenting with high-risk substance use in early grades and to combat the prevalence, we suggest the importance of educating adolescents of the dangers of drug use in early grades.
DOI: 10.6084/m9.figshare.12382283.v1
title: PEDV N interactiome _Label-Free.xlsx

description: Porcine epidemic diarrhea virus (PEDV) is the agent of PED which causes numerous economic losses for the swine industry each year. Till now, no effective vaccine or drugs are available to contain this disease. As a result, it is critical urgent to elucidate the PEDV interactome. The nucleocapsid (N) of PEDV plays a key role in viral replication. In this study, the N gene was cloned into pEGFP-C1 and the recombinant plasmid pEGFP-N was prepared. In order to obtain the interactome of N protein, the plasmids pEGFP-N and pEGFP-C1 were transfected in 293T and the cellular binding partners were pulled down using the GFP-trap. These proteins were identified by label-free MS. The results showed that approximately 1200 cellular proteins were initially identified and quantified, which represented both specific and nonspecific interactions. Under the criteria of more than 2 unique peptides, a false discovery rate (FDR) ≤ 1%and a p value &lt;0.05 for the t-test analysis, 147cellular potential proteins were identified (as listed in the table). <b></b><i></i><sub></sub><sup></sup><br>
DOI: 10.6084/m9.figshare.12382397.v1
title: SAM dataset

description: body,div,table,thead,tbody,tfoot,tr,th,td,p { font-family:"Liberation Sans"; font-size:x-small } a.comment-indicator:hover + comment { background:#ffd; position:absolute; display:block; border:1px solid black; padding:0.5em; } a.comment-indicator { background:red; display:inline-block; border:1px solid black; width:0.5em; height:0.5em; } comment { display:none; } Sentiment Analysis Multitool. Danish Sentiment annotated dataset. This annotated data is meant to be used with supervised machine learning algorithms. The dataset was created specifically to classify sentences to the root comments of Danish political articles on social media. The dataset consists of 9008 sentences that are labelled with fine-grained polarity in the range from -2 to 2 (negative to postive). The quality of the fine-grained is not cross validated and is therefore subject to uncertainties; however, the simple polarity has been cross validated and therefore is considered to be more correct.
DOI: 10.6084/m9.figshare.12382274.v2
title: Relationship between Substance Use and Socioeconomic Variables in Pennsylvania Adolescents: 2009–2017

description: <i>Purpose:</i> The goal of the current study is to analyze the substance use trends in Generation Z youth (in both middle and high school environments) and to determine if any correlation exists between substance use behaviors and demographic variables. <i>Methods:</i> Analysis is based on substance use data collected through the Pennsylvania Youth Survey (PAYS) from 2009 to 2017 and the 2016 US census data. <i>Results:</i> Our results suggest that substance use in Gen Z adolescents is mainly linked to alcohol, marijuana, cigarettes, smokeless tobacco, vaping, and narcotic prescription drugs. Alcohol is the most prevalent high-risk substance used by 12th grade students with 69.8% of students having consumed alcohol over their lifetime. Vaping is the next highly used substance with 28.9% of students in 12th grade having vaped 30 day prior to the survey. There is a significant correlation among adolescents between smoking cigarettes and using smokeless tobacco. A student using either alcohol, cigarettes or smokeless tobacco is highly likely to use the other two substances as well. Adolescents from counties with a high Caucasian population were at high risk for cigarette and smokeless tobacco use, while the opposite held true for counties with a high number of foreign-born persons or higher Asian or Hispanic populations. Higher median household incomes and higher adult education levels in a county were both protective factors against smokeless tobacco use. <i>Conclusions:</i> Results of the study suggest that students start experimenting with high-risk substance use in early grades and to combat the prevalence, we suggest the importance of educating adolescents of the dangers of drug use in early grades.
DOI: 10.6084/m9.figshare.12381650
title: Additional file 1 of Core outcome set measurement for future clinical trials in acute myeloid leukemia: the HARMONY study protocol using a multi-stakeholder consensus-based Delphi process and a final consensus meeting

description: Additional file 1. Preliminary acute myeloid leukemia (AML) outcome list.
DOI: 10.6084/m9.figshare.12381650.v1
title: Additional file 1 of Core outcome set measurement for future clinical trials in acute myeloid leukemia: the HARMONY study protocol using a multi-stakeholder consensus-based Delphi process and a final consensus meeting

description: Additional file 1. Preliminary acute myeloid leukemia (AML) outcome list.
DOI: 10.6084/m9.figshare.12381551
title: Additional file 2 of Extracting chemical reactions from text using Snorkel

description: Additional file 2. Tab-delimited file contains the list of 6871 extracted bacterial chemical reactions. The supplemental data file contains NCBI PubMed identifiers (i.e., pmids), sentence number, extracted chemicals and character positions in the abstract text, and training marginals for the prediction algorithm. All extracted chemical reactions are predicted as chemical reactions from the discriminative model.
DOI: 10.6084/m9.figshare.12381551.v1
title: Additional file 2 of Extracting chemical reactions from text using Snorkel

description: Additional file 2. Tab-delimited file contains the list of 6871 extracted bacterial chemical reactions. The supplemental data file contains NCBI PubMed identifiers (i.e., pmids), sentence number, extracted chemicals and character positions in the abstract text, and training marginals for the prediction algorithm. All extracted chemical reactions are predicted as chemical reactions from the discriminative model.
DOI: 10.6084/m9.figshare.12381470
title: Additional file 9 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 9. Somatic mutation rate (SMR) per nucleotide and individual. The column Somatic_Mutation_Rate_Residuals provides the residuals of the SMR obtained after removal of batch effects using linear regression.
DOI: 10.6084/m9.figshare.12381470.v1
title: Additional file 9 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 9. Somatic mutation rate (SMR) per nucleotide and individual. The column Somatic_Mutation_Rate_Residuals provides the residuals of the SMR obtained after removal of batch effects using linear regression.
DOI: 10.6084/m9.figshare.12381461
title: Additional file 7 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 7. Somatic variant calling information for all somatic mutations identified in this study.
DOI: 10.6084/m9.figshare.12381464
title: Additional file 8 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 8. Number of late-embryonic mosaic mutations (LEMMs) per tissue and individual. Donors with 0 LEMMs were not shown in this table.
DOI: 10.6084/m9.figshare.12381455
title: Additional file 6 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 6. 3D-genotype array containing all multi-sample, multi-tissue somatic and mosaic calls. Calls passing all quality filters are represented with the alternative allele (A,C,T,G), reference calls are represented as “.” and tissues without expression are labeled as NA. Variants overlapping with any set of constitutively expressed genes are labeled as TRUE in the respective columns Highly_expressed_genes_TPM5, Highly_expressed_genes_TPM10, Highly_expressed_genes_COV20 or Highly_expressed_genes_COV30.
DOI: 10.6084/m9.figshare.12381461.v1
title: Additional file 7 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 7. Somatic variant calling information for all somatic mutations identified in this study.
DOI: 10.6084/m9.figshare.12381464.v1
title: Additional file 8 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 8. Number of late-embryonic mosaic mutations (LEMMs) per tissue and individual. Donors with 0 LEMMs were not shown in this table.
DOI: 10.6084/m9.figshare.12381455.v1
title: Additional file 6 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 6. 3D-genotype array containing all multi-sample, multi-tissue somatic and mosaic calls. Calls passing all quality filters are represented with the alternative allele (A,C,T,G), reference calls are represented as “.” and tissues without expression are labeled as NA. Variants overlapping with any set of constitutively expressed genes are labeled as TRUE in the respective columns Highly_expressed_genes_TPM5, Highly_expressed_genes_TPM10, Highly_expressed_genes_COV20 or Highly_expressed_genes_COV30.
DOI: 10.6084/m9.figshare.12381431
title: Additional file 3 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 3 Sample information for the chronic lymphocytic leukemia cohort used for training and benchmarking of RF-RNAmut.
DOI: 10.6084/m9.figshare.12381431.v1
title: Additional file 3 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 3 Sample information for the chronic lymphocytic leukemia cohort used for training and benchmarking of RF-RNAmut.
DOI: 10.6084/m9.figshare.12381422
title: Additional file 1 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 1. GTEx donor IDs. GTEx release v7 samples used for different analyses performed in this study.
DOI: 10.6084/m9.figshare.12381413
title: Additional file 10 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 10. Signature weights obtained in the mutational signature analysis performed in tissue-specific somatic mutations.
DOI: 10.6084/m9.figshare.12381422.v1
title: Additional file 1 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 1. GTEx donor IDs. GTEx release v7 samples used for different analyses performed in this study.
DOI: 10.6084/m9.figshare.12381401
title: Additional file 4 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 4. DEG human autism amygdala.
DOI: 10.6084/m9.figshare.12381407
title: Additional file 5 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 5. Overlap between the 271 amygdala candidate ASD genes and markers of human amygdala cell types.
DOI: 10.6084/m9.figshare.12381407.v1
title: Additional file 5 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 5. Overlap between the 271 amygdala candidate ASD genes and markers of human amygdala cell types.
DOI: 10.6084/m9.figshare.12381413.v1
title: Additional file 10 of The rate and spectrum of mosaic mutations during embryogenesis revealed by RNA sequencing of 49 tissues

description: Additional file 10. Signature weights obtained in the mutational signature analysis performed in tissue-specific somatic mutations.
DOI: 10.6084/m9.figshare.12381401.v1
title: Additional file 4 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 4. DEG human autism amygdala.
DOI: 10.6084/m9.figshare.12381380
title: Additional file 1 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 1. List of genes.
DOI: 10.6084/m9.figshare.12381365
title: Additional file 1 of Association of genetic polymorphisms related to Johne’s disease with estimated breeding values of Holstein sires for milk ELISA test scores

description: Additional file 1: Supplementary File A: List of SNPs used in the custom genotype panel.
DOI: 10.6084/m9.figshare.12381380.v1
title: Additional file 1 of Identification of amygdala-expressed genes associated with autism spectrum disorder

description: Additional file 1. List of genes.
DOI: 10.6084/m9.figshare.12381365.v1
title: Additional file 1 of Association of genetic polymorphisms related to Johne’s disease with estimated breeding values of Holstein sires for milk ELISA test scores

description: Additional file 1: Supplementary File A: List of SNPs used in the custom genotype panel.
DOI: 10.6084/m9.figshare.12381197
title: Additional file 9 of Selection signatures in tropical cattle are enriched for promoter and coding regions and reveal missense mutations in the damage response gene HELB

description: Additional file 9: Table S8. 324 detected selective sweeps (206 kb) bins in African indicine cattle compared to African taurine.