cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.4655241
title: Asphalt Mixtures Naturally Aged and Tested Using the BBR

description: The files in this dataset contains the Bending Beam Rheometer test results of asphalt mixtures naturally-aged thin-beam specimens placed the roof to expose to natural environment. All of the tests within this dataset were conducted at the University of Utah. Some specimens were aged for five years (June 2015 to July 2020) while the rest were aged for three years (June 2017 to July 2020). Each specimen was tested frequently during this period. Two Job-Mix Formulae were utilized in this dataset to create eight mixtures using same PG 64-28 asphalt binder. This process provided insight into the physico-chemical changes of asphalt mixtures.
DOI: 10.34740/kaggle/dsv/2079077
title: Iron Age Archaelogical Sites of Turkey
DOI: 10.25345/c5zb92
title: MassIVE MSV000087144 - LipidMatch and LipidMatch Flow Software v3.2
title: Integrate a powerful lipidomics annotation tool into your own lipidomics workflow. LipidMatch can be used to annotate lipids detected using LC-HRMS/MS targeted, data-dependent and data-independent experiments using various vendor formats. LipidMatch can also be employed for direct infusion and imaging HRMS/MS experiments. Users can annotate lipids in feature tables generated by their optimized peak picking and filtering strategies. LipidMatch in-silico fragmentation libraries contain over 250,000 lipid species across more than 50 lipid types and continue to grow.
DOI: 10.5281/zenodo.4659318
title: Spreadsheets for GSNW, KEI and tide gauge derived sea-level modes

description: A set of CSV files containing different timeseries presented in Ocean Science paper '<em>Western boundary circulation and coastal sea-level variability in northern hemisphere oceans'</em>, from Samuel Tiéfolo Diabaté and Coauthors (submitted). - Atlantic_PCs.csv: contains the two leading principal components of the tide gauge obtained sea-level anomalies for the Atlantic set of tide gauges. - Pacific_PCs.csv: same as previous, but for the Pacific set of tide gauges. - GSNW.csv: contains our Gulf Stream North Wall index, as defined in the paper. - KEI.csv: contains our Kuroshio Extension Index, as defined in the paper.
description: Work carried out with support of the A4 project (Grant-Aid Agreement No. PBA/CC/18/01) funded by the Marine Institute (Ireland) under the Marine Research Programme funded by the Irish Government, co-financed by the European Regional Development Fund.
description: {"references": ["Samuel T. Diabat\u00e9 et al. (2021) Western boundary circulation and coastal sea-level variability in northern hemisphere oceans (submitted to Ocean Science)"]}
DOI: 10.5281/zenodo.4659317
title: Spreadsheets for GSNW, KEI and tide gauge derived sea-level modes

description: A set of CSV files containing different timeseries presented in Ocean Science paper '<em>Western boundary circulation and coastal sea-level variability in northern hemisphere oceans'</em>, from Samuel Tiéfolo Diabaté and Coauthors (submitted). - Atlantic_PCs.csv: contains the two leading principal components of the tide gauge obtained sea-level anomalies for the Atlantic set of tide gauges. - Pacific_PCs.csv: same as previous, but for the Pacific set of tide gauges. - GSNW.csv: contains our Gulf Stream North Wall index, as defined in the paper. - KEI.csv: contains our Kuroshio Extension Index, as defined in the paper.
description: Work carried out with support of the A4 project (Grant-Aid Agreement No. PBA/CC/18/01) funded by the Marine Institute (Ireland) under the Marine Research Programme funded by the Irish Government, co-financed by the European Regional Development Fund.
description: {"references": ["Samuel T. Diabat\u00e9 et al. (2021) Western boundary circulation and coastal sea-level variability in northern hemisphere oceans (submitted to Ocean Science)"]}
DOI: 10.6084/m9.figshare.14361134
title: Zhang_Supplement Materials.docx

description: The supplemental materials of the manuscript entitled "risk factors for subacute thyroiditis recurrence: a meta-analysis of cohort studies."
DOI: 10.6084/m9.figshare.14361134.v1
title: Zhang_Supplement Materials.docx

description: The supplemental materials of the manuscript entitled "risk factors for subacute thyroiditis recurrence: a meta-analysis of cohort studies."
DOI: 10.5517/ccdc.csd.cc25jbtw
title: CCDC 2011708: Experimental Crystal Structure Determination

description: Related Article: Sayan Kar, Michael Rauch, Gregory Leitus, Yehoshoa Ben-David, David Milstein |2021|Nat. Catal.|4|193|doi:10.1038/s41929-021-00575-4
DOI: 10.5517/ccdc.csd.cc25mrxh
title: CCDC 2014997: Experimental Crystal Structure Determination

description: Related Article: Tatyana S. Koptseva, Vladimir G. Sokolov, Sergey Yu. Ketkov, Elena A. Rychagova, Anton V. Cherkasov, Alexandra A. Skatova, Igor L. Fedushkin|2021|Chem.-Eur.J.|27|5745|doi:10.1002/chem.202004991
DOI: 10.5517/ccdc.csd.cc25mryj
title: CCDC 2014998: Experimental Crystal Structure Determination

description: Related Article: Tatyana S. Koptseva, Vladimir G. Sokolov, Sergey Yu. Ketkov, Elena A. Rychagova, Anton V. Cherkasov, Alexandra A. Skatova, Igor L. Fedushkin|2021|Chem.-Eur.J.|27|5745|doi:10.1002/chem.202004991
DOI: 10.34740/kaggle/dsv/2079102
title: Iron Age Archaelogical Sites of Turkey
DOI: 10.6084/m9.figshare.14361164.v1
title: Ribosomal protein database of Vibrio alginolyticus ATCC 17749

description: This work presents the ribosomal protein database of <i>Vibrio alginolyticus</i>. Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
DOI: 10.6084/m9.figshare.14361164
title: Ribosomal protein database of Vibrio alginolyticus ATCC 17749

description: This work presents the ribosomal protein database of <i>Vibrio alginolyticus</i>. Original data for the work came from the annotated proteome data of the bacterium downloaded from UniProt. Using an in-house MATLAB ribosomal protein database analysis software, the original proteome data file was parsed to extract protein name and amino acid sequence of all ribosomal proteins in the species. The database also includes calculated variables such as number of residues, molecular weight, and nucleotide sequence. Overall, the presented database could serve as a ribosomal protein mass fingerprint for use in microbial identification, or it could be used in fundamental studies seeking to uncover new insights into ribosomal protein biology.
DOI: 10.5519/qd.nuslqby6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (53 records)
DOI: 10.5519/qd.cb80i6en
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (152 records)
DOI: 10.5519/qd.kr1lo3wa
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (68 records)
DOI: 10.5519/qd.l1h7fwdu
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (194 records)
DOI: 10.5519/qd.2g4thobk
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (684 records)
DOI: 10.5519/qd.m07zigzg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (838 records)
DOI: 10.5519/qd.quwazynh
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (530 records)
DOI: 10.5519/qd.6nx23k94
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (730 records)
DOI: 10.5519/qd.lag22xkp
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (581 records)
DOI: 10.5519/qd.26fe1drq
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (235 records)
DOI: 10.5519/qd.2xgjyw3c
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (542 records)
DOI: 10.5519/qd.er6yzx3r
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (482 records)
DOI: 10.5519/qd.1jg1v211
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (64 records)
DOI: 10.21227/gbe2-vs89
title: February-04-Dong-Jiawei

description: February-04-Dong-Jiawei
DOI: 10.21227/3xac-j245
title: February-04-Dong-Jiawei

description: February-04-Dong-Jiawei
DOI: 10.25584/sfaviromics/1770769
title: SFA-VirOmics

description: PNNL's Soil Microbiome Science Focus Area (SFA) is focused on understanding the basic biology underpinning how interactions among various soil microbial community members, across trophic levels, lead to the emergence of community functions. Moisture, in particular, drives microbial interactions and influences everything from cell function to substrate fate within soils. The group predicts this results in repeatable, predictable phenotypes. The sum of these phenotypes comprises the “soil metaphenome”. Understanding how the soil metaphenome shifts in response to moisture will provide a basis for modeling and predicting these shifts in reaction network responses. Visit the PNNL Soil Microbiome Science Focus Area Program homepage for more information. PNNL’s Soil Microbiome SFA Virome Dataset Annotation page is an extension to the PNNL Soil Microbiome SFA repository on DataHub allows for exploring and downloading integrated experimental omics dataset annotations, associated experimental metadata, pre- and post-processed viral data files, and other associated materials directly related to experimental viral project data.
DOI: 10.25345/c5tj8h
title: MassIVE MSV000087145 - LipidMatch and LipidMatch Flow Software v3.3
title: ntegrate a powerful lipidomics annotation tool into your own lipidomics workflow. LipidMatch can be used to annotate lipids detected using LC-HRMS/MS targeted, data-dependent and data-independent experiments using various vendor formats. LipidMatch can also be employed for direct infusion and imaging HRMS/MS experiments. Users can annotate lipids in feature tables generated by their optimized peak picking and filtering strategies. LipidMatch in-silico fragmentation libraries contain over 250,000 lipid species across more than 50 lipid types and continue to grow.
DOI: 10.25345/c5pv4v
title: MassIVE MSV000087146 - FlouroMatch Modular and FlouroMatch Flow Software v1
title: Generate your own MS/MS spectra based on fragmentation rules or simply use the default 7000+ MS/MS spectra for annotation and processing of your non-targeted PFAS LC-HRMS/MS data. Contains three software: FluoroMatch Generator can be used to generate MS/MS spectra based on class/type specific fragmentation rules and SMILES strings indicating repeating units. For FluoroMatch Flow simply drag the correctly named vendor files onto the interface, select an output directory, and click Run. Performs file conversion, peak picking, blank filtering, identification, and combining positive and negative mode data. FluoroMatch Modular can be used to annotate PFAS from feature tables generated by user's upstream data-processing strategies. Data-dependent, targeted MS/MS, and/or AIF (Thermo only) scans are required for annotation.
DOI: 10.6084/m9.figshare.14301278
title: SRP Data - refine.bio Pipeline

description: SRP Data
DOI: 10.6084/m9.figshare.14301278.v1
title: SRP Data - refine.bio Pipeline

description: SRP Data
DOI: 10.5281/zenodo.4659367
title: Snapshots used in "Correlator Convolutional Neural Networks: An Interpretable Architecture for Image-like Quantum Matter Data"

description: Snapshots used to train the models examined in the main text and supplementary material of "Correlator Convolutional Neural Networks: An Interpretable Architecture for Image-like Quantum Matter Data".
DOI: 10.5281/zenodo.4659366
title: Snapshots used in "Correlator Convolutional Neural Networks: An Interpretable Architecture for Image-like Quantum Matter Data"

description: Snapshots used to train the models examined in the main text and supplementary material of "Correlator Convolutional Neural Networks: An Interpretable Architecture for Image-like Quantum Matter Data".
DOI: 10.5517/ccdc.csd.cc265ty5
title: CCDC 2031397: Experimental Crystal Structure Determination

description: Related Article: Kazuki Fujita, Masataka Miura, Yasuhiro Funahashi, Tsubasa Hatanaka, Shuichi Nakamura|2021|Org.Lett.|23|2104|doi:10.1021/acs.orglett.1c00259
DOI: 10.5517/ccdc.csd.cc269y8r
title: CCDC 2035344: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
description: Related Article: Meng Chen|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc269y9s
title: CCDC 2035345: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
DOI: 10.5517/ccdc.csd.cc269ybt
title: CCDC 2035346: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
DOI: 10.5517/ccdc.csd.cc269ycv
title: CCDC 2035347: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
DOI: 10.5517/ccdc.csd.cc269ydw
title: CCDC 2035348: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
DOI: 10.5517/ccdc.csd.cc26b6f6
title: CCDC 2035597: Experimental Crystal Structure Determination

description: Related Article: Bingxian Liu, Pengfei Xie, Jie Zhao, Juanjuan Wang, Manman Wang, Yuqin Jiang, Junbiao Chang, Xingwei Li|2021|Angew.Chem.,Int.Ed.|60|8396|doi:10.1002/anie.202014080
DOI: 10.5517/ccdc.csd.cc26fmny
title: CCDC 2038890: Experimental Crystal Structure Determination

description: Related Article: Chao Wan, Jian-Yu Pang, Wei Jiang, Xiao-Wei Zhang, Xiang-Guo Hu|2021|J.Org.Chem.|86|4557|doi:10.1021/acs.joc.0c02980
DOI: 10.5517/ccdc.csd.cc26fmpz
title: CCDC 2038891: Experimental Crystal Structure Determination

description: Related Article: Chao Wan, Jian-Yu Pang, Wei Jiang, Xiao-Wei Zhang, Xiang-Guo Hu|2021|J.Org.Chem.|86|4557|doi:10.1021/acs.joc.0c02980
DOI: 10.5517/ccdc.csd.cc269yfx
title: CCDC 2035349: Experimental Crystal Structure Determination

description: Related Article: Hong Yan, Meng Chen, Deshi Zhao, Jingkai Xu, Chunxiao Li, Changsheng Lu|2021|Angew.Chem.,Int.Ed.|60|7838|doi:10.1002/anie.202015299
DOI: 10.5517/ccdc.csd.cc26g4b5
title: CCDC 2039376: Experimental Crystal Structure Determination

description: Related Article: Robbert van Putten, Georgy A. Filonenko, Annika M. Krieger, Martin Lutz, Evgeny A. Pidko|2021|Organometallics|40|674|doi:10.1021/acs.organomet.0c00781
DOI: 10.5517/ccdc.csd.cc26j5hf
title: CCDC 2041334: Experimental Crystal Structure Determination

description: Related Article: Chao Wan, Jian-Yu Pang, Wei Jiang, Xiao-Wei Zhang, Xiang-Guo Hu|2021|J.Org.Chem.|86|4557|doi:10.1021/acs.joc.0c02980
DOI: 10.5517/ccdc.csd.cc26qsxn
title: CCDC 2047702: Experimental Crystal Structure Determination

description: Related Article: Eri Ogino, Ayu Nakamura, Satoru Kuwano, Takayoshi Arai|2021|Org.Lett.|23|1980|doi:10.1021/acs.orglett.0c04245
DOI: 10.6084/m9.figshare.14361210
title: Additional file 1 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 1. Expression values of differentially expressed genes in cultivars HR.
DOI: 10.6084/m9.figshare.14361210.v1
title: Additional file 1 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 1. Expression values of differentially expressed genes in cultivars HR.
DOI: 10.6084/m9.figshare.14361219
title: Additional file 3 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 3. Full list of statistically significant GO terms of cultivars HR and ES.
DOI: 10.6084/m9.figshare.14361216
title: Additional file 2 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 2. Expression values of differentially expressed genes in cultivars ES.
DOI: 10.6084/m9.figshare.14361222.v1
title: Additional file 4 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 4. HR up-regulated genes among those with an opposite pattern expression between HR and ES roots (HR &gt; (R, MS, S) &gt; ES).
DOI: 10.6084/m9.figshare.14361219.v1
title: Additional file 3 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 3. Full list of statistically significant GO terms of cultivars HR and ES.
DOI: 10.6084/m9.figshare.14361222
title: Additional file 4 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 4. HR up-regulated genes among those with an opposite pattern expression between HR and ES roots (HR &gt; (R, MS, S) &gt; ES).
DOI: 10.6084/m9.figshare.14361225.v1
title: Additional file 5 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 5. HR down-regulated genes among those with an opposite pattern expression between HR and ES roots (HR &gt; (R, MS, S) &gt; ES).
DOI: 10.6084/m9.figshare.14361216.v1
title: Additional file 2 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 2. Expression values of differentially expressed genes in cultivars ES.
DOI: 10.6084/m9.figshare.14361225
title: Additional file 5 of Verticillium wilt resistant and susceptible olive cultivars express a very different basal set of genes in roots

description: Additional file 5. HR down-regulated genes among those with an opposite pattern expression between HR and ES roots (HR &gt; (R, MS, S) &gt; ES).
DOI: 10.6084/m9.figshare.14361233
title: Additional file 2 of Practical strategies for handling breakdown of multiple imputation procedures

description: Additional file 2. Stata syntax for analyses of data from the Longitudinal Study of Australian Children.
DOI: 10.6084/m9.figshare.14361233.v1
title: Additional file 2 of Practical strategies for handling breakdown of multiple imputation procedures

description: Additional file 2. Stata syntax for analyses of data from the Longitudinal Study of Australian Children.
DOI: 10.6084/m9.figshare.14361314
title: Additional file 9 of Genetic control of flowering in greater yam (Dioscorea alata L.)

description: Additional File 9: Table S1. Accessions used in this study with their attributes: flowering and sex.
DOI: 10.6084/m9.figshare.14361314.v1
title: Additional file 9 of Genetic control of flowering in greater yam (Dioscorea alata L.)

description: Additional File 9: Table S1. Accessions used in this study with their attributes: flowering and sex.
DOI: 10.6084/m9.figshare.14361426.v1
title: Additional file 1 of Insights into phylogenetic relationships and genome evolution of subfamily Commelinoideae (Commelinaceae Mirb.) inferred from complete chloroplast genomes

description: Additional file 1: Table S1. List of sampling taxa from 15 species of Commelinaceae and assembly information. Table S2. List of species used for phylogenomic analyses. Table S3. Nucleotide diversity (Pi) of 16 Commelinoideae species. Figure S1. Complete chloroplast genome of 15 Commelinaceae taxa in this study. Figure S2. Amino acid alignment of plastid accD and rpoA genes within 22 Commelinales taxa.
DOI: 10.6084/m9.figshare.14361426
title: Additional file 1 of Insights into phylogenetic relationships and genome evolution of subfamily Commelinoideae (Commelinaceae Mirb.) inferred from complete chloroplast genomes

description: Additional file 1: Table S1. List of sampling taxa from 15 species of Commelinaceae and assembly information. Table S2. List of species used for phylogenomic analyses. Table S3. Nucleotide diversity (Pi) of 16 Commelinoideae species. Figure S1. Complete chloroplast genome of 15 Commelinaceae taxa in this study. Figure S2. Amino acid alignment of plastid accD and rpoA genes within 22 Commelinales taxa.
DOI: 10.6084/m9.figshare.14361473
title: Additional file 6 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 6: Supplementary Table S1. Prognostic value of 43 EMRGs in TCGA dataset.
DOI: 10.6084/m9.figshare.14361476
title: Additional file 7 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 7: Supplementary Table S2. GO Biological process clustered by 326 hub genes.
DOI: 10.6084/m9.figshare.14361476.v1
title: Additional file 7 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 7: Supplementary Table S2. GO Biological process clustered by 326 hub genes.
DOI: 10.6084/m9.figshare.14361479
title: Additional file 8 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 8: Supplementary Table S3. KEGG pathways clustered by 326 hub genes.
DOI: 10.6084/m9.figshare.14361479.v1
title: Additional file 8 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 8: Supplementary Table S3. KEGG pathways clustered by 326 hub genes.
DOI: 10.6084/m9.figshare.14361473.v1
title: Additional file 6 of An energy metabolism-based eight-gene signature correlates with the clinical outcome of esophagus carcinoma

description: Additional file 6: Supplementary Table S1. Prognostic value of 43 EMRGs in TCGA dataset.
DOI: 10.6084/m9.figshare.14361492.v1
title: Additional file 1 of A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)

description: Additional file 1. Results of whole genome analysis of 28 species. The file includes a list of species, and the genome sequence files downloaded from NCBI, the PCC matrix which is a result of the WGKS algorithm, as well as the species clusters and the cluster statistics.
DOI: 10.6084/m9.figshare.14361492
title: Additional file 1 of A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)

description: Additional file 1. Results of whole genome analysis of 28 species. The file includes a list of species, and the genome sequence files downloaded from NCBI, the PCC matrix which is a result of the WGKS algorithm, as well as the species clusters and the cluster statistics.
DOI: 10.6084/m9.figshare.14361495
title: Additional file 2 of A tail of two pandas— whole genome k-mer signature analysis of the red panda (Ailurus fulgens) and the Giant panda (Ailuropoda melanoleuca)

description: Additional file 2. Results of the alignment of mitochondrial DNA from 52 carnivore species. This file includes a list of species and their corresponding accession number, the sequence identity matrix, species clustering information and cluster statistics.