cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/49scv-avm48
title: V. cholerae CF59 - ∆tcpB pMT5

description: Classical strain with ctxA deletion.Minor pilin tcpB knockout.Cell harbors pMT5 plasmid (inducible toxT).
description: <strong>Tilt Series Date:</strong> 2015-06-17</p>
<strong>Data Taken By:</strong> Yi-Wei Chang</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> O395-N1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -6.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> reupload_downloaded</p>
<strong>Processing Software Used:</strong> SIRT</p>
<strong>Collaborators and Roles:</strong> Strain from Ronald K. Taylor</p>
<strong>Purification / Growth Conditions / Treatment:</strong> ON cultures of Vibrio cholerae O395 NI pMT5 grown in LB pH 6.5, 1 mM IPTG and 100 ug/mL ampicilin</p>
<strong>Sample Preparation:</strong> Vitrobot (MK iv) settings: 100% humidity, 4µl sample, 10 mg/ml BSA treated gold. Blot force 6, blot time 2.5 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-13/3dimage_73283/</p>20150617_AK08_10013_SIRT_2K.rec,  Reconstruction (Pixel Size 0.0 nm), 5.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-13/3dimage_73283/20150617_AK08_10013_SIRT_2K.rec"
        > <i class="download icon"></i> Download </a></p>

        20150617_AK08_10013.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/ycw2015-06-17-13/rawdata/20150617_AK08_10013.mrc"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.u762v6
title: Occurrence Download

description: A dataset containing 6374 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ulmus glabra",
 "Country is Russian Federation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6374 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002743-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/m55c8-mwz17
title: Coxiella_burnetii_ wtACCMD_pH4d5

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Wild-type cells day-5 culture. Cells grown in acidic media ACCMD and pH 4.75
description: <strong>Tilt Series Date:</strong> 2017-08-15</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown in Robert Heinzen's lab @NIAID and ~50 ul cells were sent to us.</p>
<strong>Sample Preparation:</strong> Refer to Heinzen lab. Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-15-58/rawdata/</p>Cb_20170816_Cb1pH4d50057.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-15-58/rawdata/Cb_20170816_Cb1pH4d50057.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_20170816_Cb1pH4d50057_full.rec,  Reconstruction (Pixel Size 1.56 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-08-15-58/3dimage_88056/Cb_20170816_Cb1pH4d50057_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/cgaep-4jb19
title: Coxiella_ Verocells_28dpi

description: Coxiella burnetii Nine Mile phase II clone 4 (NMIIC4) strain. Coxiella cells purified from infected Vero cells.
description: <strong>Tilt Series Date:</strong> 2017-09-25</p>
<strong>Data Taken By:</strong> Debnath Ghosal</p>
<strong>Species / Specimen:</strong> Coxiella burnetii</p>
<strong>Strain:</strong> Nine Mile phase II clone 4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Strain sent to us by Robert Heinzen. Data collected and processed by Debnath Ghosal using Caltech tomography pipeline.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Refer to Heinzen lab.</p>
<strong>Sample Preparation:</strong> Freezing: 100% humidity, 4µl sample, Blot force 6, blot time 4 sec. Wait time 0 sec. Drain time 1 sec. Ethane/propane mix. Grid: Quantifoil Cu 2/2 200. Add gold to cells prior to freezing: 1ul of gold to 4 ul of cells, freeze.T</p>
  dga2017-09-25-15_slicer18971.jpg: Multilayered structure beneath the inner membrane
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-15/rawdata/</p>Cb_vero_201709250015.mrc,  Tilt Series (Pixel Size 0.39 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-15/rawdata/Cb_vero_201709250015.mrc"
        > <i class="download icon"></i> Download </a></p>

        Cb_vero_201709250015.rec,  Reconstruction (Pixel Size 1.56 nm), 889.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/dga2017-09-25-15/3dimage_88412/Cb_vero_201709250015.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.348rq7
title: Occurrence Download

description: A dataset containing 2609 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Abelia chinensis"
 ]
}

 The dataset includes 2609 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002742-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34808/n7zk-px84
title: Structure evolution of V2O5 thin films deposited on silicon substrate - High-Temperature X-ray Diffraction

description: The DataSet contains the XRD patterns of  V2O5 thin films deposited on silicon substrates (111). The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. The sol was deposited on the silicon substrate. The structure was measured in-situ during heating between 50-800°C  under synthetic air. 
X-ray diffraction patterns (XRD) were collected on a Philips X’PERT PLUS diffractometer with Cu Ka radiation (1.5406 Å) and ranging from 10 to 80 degrees.
DOI: 10.34808/2xxa-gx45
title: An facile Fortran-95 algorithm to simulate complex instabilities  in three-dimensional hyperbolic systems

description: It is well know that the simulation of fractional systems is a difficult task from all points of view. In particular, the computer implementation of numerical algorithms to simulate fractional systems of partial differential equations in three dimensions is a hard task which has no been solved satisfactorily. Here, we provide a Fortran-95 code to solve systems of hyperbolic (fractional o non-fractional) partial differential equations that generalize various known models from physics, chemistry and biology. The algorithm is easy to implement in any other computer language by any scientist with minimal knowledge on scientific programming. The  computer implementation exploits the advantages of the efficient matrix algebra already available in Fortran and other languages. This code is susceptible to be compiled in parallel using OpenMP, whence it follows that the computer time can be substantially reduced. The details of the mathematical model solved by this code can be found in Macías-Díaz, J. E. Computer Physics Communications (2020):107383, 
https://doi.org/10.1016/j.cpc.2020.107383
DOI: 10.34808/ejp1-3305
title: Nonlinear impedance of 50(2Bi2O3-V2O5)-50SrB4O7 glass heat treated at 693 K measured with impedance spectroscopy method at high temperature region

description: The nonlinear electrcial properties of 50(2Bi2O3-V2O5)-50SrB4O7 glass heat treated at 693 K was measured by impedance spectroscopy method. 
 The polycrystalline strontium–borate, SrB4O7 was synthesized via a solid state reaction route that involved heating stoichiometric mixtures of analytical grade SrCO3 and H3BO3 at 1073 K for 12 hours. Next, sample of a composition of 50(2Bi2O3-V2O5)-50SrB4O7 (in %mol) was prepared from reagent-grade Bi2O3, V2O5 and preprepared SrB4O7. Samples of glass were prepared by the conventional melt quenching technique. The melting was conducted in alumina crucibles at 1373 K for 2 hours. The melt was poured onto a preheated (573 K) brass plate and pressed by another plate to obtain flat circular disks of 1–2 mm thickness and 20–30 mm in diameter. Glass samples were heat treated at 693 K for 3 h to obtain partially crystallized materials.
For the electrical measurements gold electrodes were evaporated at the preheated samples. Nonlinear impedance measurements were carried out in the temperature range from 373 K to 813 K, with the ac voltage of 1 Vrms with Concept 40 broadband dielectric spectrometer and a high temperature Controller Novotherm HT 1600. The measurements were carried out both while increasing and decreasing the temperature. The higher harmonic components (harmonic 0 and harmonic2) were measured up to frequency of 1000 Hz. Here the impedance for harmonic components was defined as the ratio of the voltage base wave to the n-th harmonic current component: Zn∗= U0∗/In∗, where Zn⁎ including the base wave generally depend on the sample voltage U1⁎ base wave amplitude. From Zn⁎ allother independent variables are calculated. The dependence of current density on the cosinusoidal electric field E(t)= E0cos(ωt) leads to the following expression:
j´ = σ´0hE0 cos (ωt) + σ´1hE0 cos (2ωt) + σ´2hE0 cos (3ωt) + …Where σ´0h denotes base conductivity, while σ´1h, σ´2h etc. are higher harmonics conductivity. The admittivity for harmonic components with n ≥1, is calculated from relation σ⁎n = i2πfε0ε⁎n.
DOI: 10.34808/6prv-7f17
title: Nonlinear impedance of 50Bi2VO5.5-50SrB4O7 fully crystallized glass at 813 K measured with impedance spectroscopy method at high temperature region

description: The nonlinear electrcial properties of 50Bi2VO5.5-50SrB4O7 fully crystallized glass was measured by impedance spectroscopy method. 
In order to prepare glasses two compounds: Bi2VO5.5 and SrB4O7 were synthesized via a solid state reaction route. The Bi2VO5.5 was synthesized from the stoichiometric mixture of initial powders of Bi2O3 and V2O5 which were ball-milled in pure acetone for 6 h at room temperature. The milling was performed in steps of 1 h with rest intervals of 10min. The mixture was heated up to 1020K in air and kept at this temperature for 24 h. The heating and cooling rate was of 50K h-1. The obtained powder was checked by X-ray diffraction method. The SrB4O7 was synthesized from the stoichiometric mixture of analytical grade SrCO3 and H3BO3 which were mashed in a mortar. Next the mixture was heated up to 1073K and kept at this temperature for 12 h. Samples of a composition of 50Bi2VO5.5–50SrB4O7 (in mol%) were prepared by the conventional melt quenching technique. The melting was conducted in alumina crucibles at 1373K for 2 h. The melts were poured onto a preheated (573 K) brass plate and pressed by another plate to obtain flat circular disks of 1–2mm thickness and 20–30mm diameter. Glass was fully crystallized due to heat treatment at 813 K.
For the electrical measurements gold electrodes were evaporated at the preheated samples. Impedance measurements were carried out in the temperature range from 373 K to 813 K, with the ac voltage of 1 Vrms with Concept 40 broadband dielectric spectrometer. The higher harmonic components (harmonic 0, harmonic 1 and harmonic 2) were measured up to frequency of 1000 Hz. Measurements were conducted during heating and cooling. Here the impedance for harmonic components was defined as the ratio of the voltage base wave to the n-th harmonic current component: Zn∗= U0∗/In∗, where Zn⁎ including the base wave generally depend on the sample voltage U1⁎ base wave amplitude. From Zn⁎ allother independent variables are calculated. The dependence of current density on the cosinusoidal electric field E(t)= E0cos(ωt) leads to the following expression:
j´ = σ´0hE0 cos (ωt) + σ´1hE0 cos (2ωt) + σ´2hE0 cos (3ωt) + …Where σ´0h denotes base conductivity, while σ´1h, σ´2h etc. are higher harmonics conductivity. The admittivity for harmonic components with n ≥1, is calculated from relation σ⁎n = i2πfε0ε⁎n.
DOI: 10.34808/8dze-b590
title: Mechanical properties of single V2O5 nanocrystal - nanoindentation measurement in control of the max-depth

description: The DataSet contains the nanoindentation curves (indentation force Fn vs penetrationPd) for a single V2O5 nanocrystal supported on a substrate. The measurements were performed in control of the maximum depth of  Berkovich indenter penetration: 60, 70, and 100 nm. 
Nanoindentation curves were collected on a Nanoidenter TTX-NHT2 CSM. The details about measurements are included in each .text file.
DOI: 10.34808/fdkb-4c39
title: Linear impedance of 50Bi2VO5.5-50SrB4O7 glass measured with impedance spectroscopy method at low temperature region

description: The linear electrcial properties of 50Bi2VO5.5-50SrB4O7 glass was measured by impedance spectroscopy method. 
In order to prepare glasses two compounds: Bi2VO5.5 and SrB4O7 were synthesized via a solid state reaction route. The Bi2VO5.5 was synthesized from the stoichiometric mixture of initial powders of Bi2O3 and V2O5 which were ball-milled in pure acetone for 6 h at room temperature. The milling was performed in steps of 1 h with rest intervals of 10min. The mixture was heated up to 1020K in air and kept at this temperature for 24 h. The heating and cooling rate was of 50K h-1. The obtained powder was checked by X-ray diffraction method. The SrB4O7 was synthesized from the stoichiometric mixture of analytical grade SrCO3 and H3BO3 which were mashed in a mortar. Next the mixture was heated up to 1073K and kept at this temperature for 12 h. Samples of a composition of 50Bi2VO5.5–50SrB4O7 (in mol%) were prepared by the conventional melt quenching technique. The melting was conducted in alumina crucibles at 1373K for 2 h. The melts were poured onto a preheated (573 K) brass plate and pressed by another plate to obtain flat circular disks of 1–2mm thickness and 20–30mm diameter. 
For the electrical measurements gold electrodes were evaporated at the preheated samples. Impedance measurements were carried out in the temperature range from 153 K to 423 K, in the frequency range from 10mHz to 1 MHz and with the ac voltage of 1 Vrms with Concept 40 broadband dielectric spectrometer.
DOI: 10.34808/wqq2-at23
title: Thermal behaviour of vanadium xerogel powder and V2O5 nanorods under helium atmosphere

description: The DataSet contains the results of the thermal behavior of the vanadium xerogel powder and V2O5 nanorods obtained at 650C. The information about xerogel powder and V2O5 nanorods synthesis is described in the Journal of Nanomaterials. 
Thermogravimetric analysis (TG) and Differential scanning calorimetry (DSC) measurements were carried out under helium atmosphere from -150C to 800C for xerogel powder and from -150C to 600C for V2O5 nanorods  (with a heating rate of 10 C/min) using Netzsch STA 449 F1.
DOI: 10.5281/zenodo.15587899
title: IODP Expedition 344 Core composite images

description: A digital composite image (PNG) is made for each core comprising core sections scanned using a line-scan camera. The composite layout is equivalent to traditional core table photos. Top left is top of core; color and meter rule references are included.
DOI: 10.5281/zenodo.15587900
title: IODP Expedition 344 Core composite images

description: A digital composite image (PNG) is made for each core comprising core sections scanned using a line-scan camera. The composite layout is equivalent to traditional core table photos. Top left is top of core; color and meter rule references are included.
DOI: 10.34808/kvwp-1y10
title: Nonlinear impedance of 50Bi2VO5.5-50SrB4O7 glass measured with impedance spectroscopy method at high temperature region

description: The nonlinear electrcial properties of 50(Bi2VO5.5)-50SrB4O7 glass was measured by impedance spectroscopy method. 
In order to prepare glasses two compounds: Bi2VO5.5 and SrB4O7 were synthesized via a solid state reaction route. The Bi2VO5.5 was synthesized from the stoichiometric mixture of initial powders of Bi2O3 and V2O5 which were ball-milled in pure acetone for 6 h at room temperature. The milling was performed in steps of 1 h with rest intervals of 10min. The mixture was heated up to 1020K in air and kept at this temperature for 24 h. The heating and cooling rate was of 50K h-1. The obtained powder was checked by X-ray diffraction method. The SrB4O7 was synthesized from the stoichiometric mixture of analytical grade SrCO3 and H3BO3 which were mashed in a mortar. Next the mixture was heated up to 1073K and kept at this temperature for 12 h. Samples of a composition of 50Bi2VO5.5–50SrB4O7 (in mol%) were prepared by the conventional melt quenching technique. The melting was conducted in alumina crucibles at 1373K for 2 h. The melts were poured onto a preheated (573 K) brass plate and pressed by another plate to obtain flat circular disks of 1–2mm thickness and 20–30mm diameter. 
For the electrical measurements gold electrodes were evaporated at the preheated samples. Impedance measurements were carried out in the temperature range from 373 K to 613 K, with the ac voltage of 1 Vrms with Concept 40 broadband dielectric spectrometer. The higher harmonic components (harmonic 0, harmonic 1 and harmonic 2) were measured up to frequency of 1000 Hz. Measurements were conducted during heating and cooling. Here the impedance for harmonic components was defined as the ratio of the voltage base wave to the n-th harmonic current component: Zn∗= U0∗/In∗, where Zn⁎ including the base wave generally depend on the sample voltage U1⁎ base wave amplitude. From Zn⁎ allother independent variables are calculated. The dependence of current density on the cosinusoidal electric field E(t)= E0cos(ωt) leads to the following expression:
j´ = σ´0hE0 cos (ωt) + σ´1hE0 cos (2ωt) + σ´2hE0 cos (3ωt) + …Where σ´0h denotes base conductivity, while σ´1h, σ´2h etc. are higher harmonics conductivity. The admittivity for harmonic components with n ≥1, is calculated from relation σ⁎n = i2πfε0ε⁎n.
DOI: 10.34808/dft8-3017
title: SEM micrographs of vanadium oxide nanostructures obtained by V2O5 recrystallization at 1200°C

description: The DataSet contains the scanning electron microscopy (SEM) micrographs of vanadium oxide nanostructures on quartz glass and silicon substrates obtained by recrystallization of V2O5 thin films at 1200°C under synthetic air.  The thin films were obtained by the sol-gel method.  The information about sol synthesis is described in the Journal of Nanomaterials. 
The surface morphologies of the samples were studied by Phenom G2 pro desktop scanning electron microscope (SEM) (Waltham, MA, USA), mounting the analyzed sample on a carbon conductive tape.
DOI: 10.5281/zenodo.15587895
title: IODP Expedition 344 Closeup images

description: Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section halves in sediments and rock.
DOI: 10.5281/zenodo.15587896
title: IODP Expedition 344 Closeup images

description: Close-up images taken by digital cameras as requested by the science party, typically when the section-half image is not sufficient. Close-up photographs of the areas of interest may be taken from whole-round sections, pieces, or section halves in sediments and rock.
DOI: 10.5281/zenodo.15587893
title: IODP Expedition 344 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.5281/zenodo.15587894
title: IODP Expedition 344 Elemental analysis (CHNS)

description: Fundamental elemental component (total carbon, hydrogen, nitrogen, and sulfur) fluctuations help define the origin, depositional environment, and diagenetic alteration of source materials. To determine C, H, N, and S, solid samples are reacted with a catalyst, separated by chromatography, and detected by thermal conductivity on a FlashEA 1112 CHNS elemental analyzer. Organic carbon can be directly measured on the elemental analyzer by acidification of the sample to drive off carbonate as carbon dioxide before analyzing. Total organic carbon on this report is measured rather than calculated.
DOI: 10.5281/zenodo.15587891
title: IODP Expedition 344 Carbonates composite report

description: This composite report includes data from two analyses (total carbon from Elemental analysis [CHNS], and inorganic carbon from [Coulometer]). Each row combines the  CHNS and Coulometer data from measurements made on the same sample at the same time for a particular section and section offset (depth). If data do not exist for a particular expedition, the column does not appear. To identify individual samples and tests, see each separate data type (Elemental analysis and Coulometer). If the same sample was measured multiple times by any of the methods, results in the report will be combined on one line where possible. Each additional replicate result will be shown in subsequent rows and will be combined where possible. Report includes results for carbon forms: total, inorganic, calcium carbonate, and organic by difference, along with total hydrogen, nitrogen, and sulfur.