cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19692246.v1
title: The Pareto type I joint frailty-copula model for clustered bivariate survival data

description: Clustered bivariate survival data arise in various fields, such as biology and medicine, when individuals in a dataset are clustered and exhibit two survival outcomes. Recently, the joint frailty-copula model was proposed to analyze clustered bivariate survival outcomes by accommodating the between-cluster heterogeneity via a shared frailty term. In this model, researchers fitted the baseline hazard functions via the nonparametric model, the spline model, or the Weibull model. However, when a population has extremely large survival time, the baseline hazard functions are better modeled by a heavy-tailed distribution. In this paper, we adopt the Pareto type I distribution for the joint frailty-copula model, which is one of the most popular heavy-tailed distributions. We show that the moments of the Pareto type I joint frailty copula model diverge to infinity owing to the heavy right-tail. We develop statistical inference methods based on three types of censoring schemes: (i) bivariate random censoring, (ii) semi-competing risks, and (iii) competing risks. We develop maximum likelihood estimation procedures, and make our computational tools available for users. Simulations are performed to check the accuracy of the proposed method. We finally analyze a real dataset for illustration.
DOI: 10.25500/edata.bham.00001076
title: Computational Data Supporting "Synthesis and Reactivity of the [NCCCO]– Cyanoketenate Anion"
DOI: 10.5281/zenodo.10837601
title: Japanese Vowels

description: This dataset records 640 time series of 12 LPC cepstrum coefficients taken from nine male speakers. The dataset consists of multivariate time series (12 variables) of length 29 time steps. Each time series is associated with a class (1-9) indicating the speaker. The dataset consists of 270 time series used for training and 370 for testing.

This is a pre-processed version saved in numpy format. The original Japanese Vowels dataset and additional information can be found on UCI.

The data are 3-dimensional arrays of shape [n_samples, time_steps, n_variables]. The data can be loaded as follows:

loaded_data = np.load("Japanese_Vowels.npz")
Xtr = loaded_data['Xtr'] # Training data of shape (270, 29, 12)
Ytr = loaded_data['Ytr'] # Training labels of shape (270, 1)
Xte = loaded_data['Xte'] # Test data of shape (370, 29, 12)
Yte = loaded_data['Yte'] # Test labels of shape (370, 1)
DOI: 10.5281/zenodo.10837602
title: Japanese Vowels

description: This dataset records 640 time series of 12 LPC cepstrum coefficients taken from nine male speakers. The dataset consists of multivariate time series (12 variables) of length 29 time steps. Each time series is associated with a class (1-9) indicating the speaker. The dataset consists of 270 time series used for training and 370 for testing.

This is a pre-processed version saved in numpy format. The original Japanese Vowels dataset and additional information can be found on UCI.

The data are 3-dimensional arrays of shape [n_samples, time_steps, n_variables]. The data can be loaded as follows:

loaded_data = np.load("Japanese_Vowels.npz")
Xtr = loaded_data['Xtr'] # Training data of shape (270, 29, 12)
Ytr = loaded_data['Ytr'] # Training labels of shape (270, 1)
Xte = loaded_data['Xte'] # Test data of shape (370, 29, 12)
Yte = loaded_data['Yte'] # Test labels of shape (370, 1)
DOI: 10.25592/uhhfdm.13893
title: Dataset to: Environmental controls of dark CO2 fixation in wetland microbiota

description: This dataset supports the paper: "Environmental controls of dark CO<sub>2</sub> fixation in wetland microbiota".

It contains genecluster abundances, annotations, taxonomy and membership for the metagenomic and metatranscriptomic analyses aswell as ASV tables for the 16S rRNA gene analyses.
description: This study was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) within the Research Training Group2530: "Biota-mediated effects on Carbon cycling in Estuaries" (project number 407270017; contribution to Universität Hamburg and Leibniz-Institut für Gewässerökologie und Binnenfischerei im Forschungsverbund Berlin e.V.).
This work was supported by the DFG Research Infrastructure NGS_CC (project 407495230) as part of the Next Generation Sequencing Competence Network (project 423957469) and core funding from ETH Zürich to the Microbiome Research Laboratory headed by S.S. Transcriptome and 16S rRNA sequencing were carried out at the Competence Centre for Genomic Analysis (Kiel).
Peter Mueller was supported by the Deutsche Forschungsgemeinschaft (DFG; German Research Foundation) in the framework of the Emmy Noether Program (502681570).
DOI: 10.6084/m9.figshare.25434907
title: 20240311_detelpy_example_data.zip

description: Example input files to test deTELpy
DOI: 10.6084/m9.figshare.25434904
title: 20240311_detelpy_example_data.zip.md5

description: md5 hash file
DOI: 10.6084/m9.figshare.25434904.v1
title: 20240311_detelpy_example_data.zip.md5

description: md5 hash file
DOI: 10.5281/zenodo.10837778
title: Global Phytoplankton Phenological Indices - 25km resolution

description: Bloom phenology metrics calculated from OC-CCI v6.0 data at a spatial resolution of 25km. 

Metrics calculated using three approaches:



Threshold method

Cumulative Sum method

Rate of Change method


 

Version 1.0:



Data from 1997 to 2022.


Version 1.1:



Data from 1997 to 2023.
DOI: 10.5281/zenodo.8402822
title: Global Phytoplankton Phenological Indices - 25km resolution

description: Bloom phenology metrics calculated from OC-CCI v6.0 data at a spatial resolution of 25km. 

Metrics calculated using three approaches:



Threshold method

Cumulative Sum method

Rate of Change method


 

Version 1.0:



Data from 1997 to 2022.


Version 1.1:



Data from 1997 to 2023.
DOI: 10.26165/juelich-data/0gqjfc
title: Replication NMR Data for: In operando NMR investigations of the aqueous electrolyte chemistry during electrolytic CO2 reduction

description: NMR raw data of 13C and 23Na experiments for the in operando CO2 electrolysis experiments in aqueous HCO3- electrolyte, as described in the publication. The in operando electrolysis experiments were divided into 3 stages: open circuit voltage (OCV), chronoamperometry (CA) at a constant voltage slightly below the electrolysis potential of -1.1 V vs. Ag/AgCl, and finally the chronopotentiometry (CP) at a constant current density of -10 µA/cm², where the electrolysis reaction took place. For each stage, 12 hours of spectra were recorded (Spectra recording). Afterwards, saturation recovery and CPMG experiments were performed for the determination of T1 and T2, respectively. In case of the 13C experiments, additional 1D exchange spectroscopy (EXSY) experiments were performed for the determination of the CO2/HCO3- exchange rate. 13C experiments were performed at two different magnetic fields (14.1 T and 9.4 T), 23Na at a single magnetic field (14.1 T).
DOI: 10.6084/m9.figshare.24249558
title: The acoustic activity of <i>Physalaemus cuvieri</i> (Anura Leptodactylidae) is strongly influenced by climatic conditions, but not by latitude or landscape metrics

description: Understanding the factors that influence acoustic activity of anuran species is essential for proper species management and herein, we investigated the influence of landscape metrics (% native vegetation cover and number of patches), latitude and climatic variables (temperature and relative humidity) on the acoustic activity of <i>Physalaemus cuvieri</i>. We used Passive Acoustic Monitoring (PAM) to record the acoustic activity in males of the target species in 29 water bodies distributed throughout the Cerrado, the Brazilian savanna. We investigated whether the rate of call emission by <i>P. cuvieri</i> males is influenced by predictor variables based on generalized linear mixed models. The call rate of <i>P. cuvieri</i> males was influenced only by air temperature variation throughout night. We found a peak of acoustic activity in the warmer hours in the beginning of the night followed by a decrease as the air temperature declines throughout the dawn. Contrary to our expectations, we did not find any significant influence of latitude, relative humidity or landscape metrics (number of fragments or percentage of native vegetation cover) on the acoustic activity of <i>P. cuvieri</i>. The impacts of landscape metrics on the acoustic activity of <i>P. cuvieri</i> are not significant, because it is a species with more generalist ecological requirements, which to allow the individuals to move across the landscape to be successful in colonizing water bodies situated in altered environments. Previous studies have suggested that changes in temperature may affect species phenology, since individuals alter their vocal activity, or their time spent in chorus in response to climate change. In this sense, our results are important because they allow us to predict the impact of future climate change on the acoustic activity of the target species, as well as demographic implications. We tested the influence of latitude, landscape metrics and climatic variables on the acoustic activity of <i>Physalaemus cuvieri</i>. The acoustic activity of <i>Physalaemus cuvieri</i> is strongly influenced by weather conditions, specifically air temperature. Latitude and landscape metrics did not influence the call emission rates of <i>P. cuvieri</i> males.
DOI: 10.6084/m9.figshare.24249558.v1
title: The acoustic activity of <i>Physalaemus cuvieri</i> (Anura Leptodactylidae) is strongly influenced by climatic conditions, but not by latitude or landscape metrics

description: Understanding the factors that influence acoustic activity of anuran species is essential for proper species management and herein, we investigated the influence of landscape metrics (% native vegetation cover and number of patches), latitude and climatic variables (temperature and relative humidity) on the acoustic activity of <i>Physalaemus cuvieri</i>. We used Passive Acoustic Monitoring (PAM) to record the acoustic activity in males of the target species in 29 water bodies distributed throughout the Cerrado, the Brazilian savanna. We investigated whether the rate of call emission by <i>P. cuvieri</i> males is influenced by predictor variables based on generalized linear mixed models. The call rate of <i>P. cuvieri</i> males was influenced only by air temperature variation throughout night. We found a peak of acoustic activity in the warmer hours in the beginning of the night followed by a decrease as the air temperature declines throughout the dawn. Contrary to our expectations, we did not find any significant influence of latitude, relative humidity or landscape metrics (number of fragments or percentage of native vegetation cover) on the acoustic activity of <i>P. cuvieri</i>. The impacts of landscape metrics on the acoustic activity of <i>P. cuvieri</i> are not significant, because it is a species with more generalist ecological requirements, which to allow the individuals to move across the landscape to be successful in colonizing water bodies situated in altered environments. Previous studies have suggested that changes in temperature may affect species phenology, since individuals alter their vocal activity, or their time spent in chorus in response to climate change. In this sense, our results are important because they allow us to predict the impact of future climate change on the acoustic activity of the target species, as well as demographic implications. We tested the influence of latitude, landscape metrics and climatic variables on the acoustic activity of <i>Physalaemus cuvieri</i>. The acoustic activity of <i>Physalaemus cuvieri</i> is strongly influenced by weather conditions, specifically air temperature. Latitude and landscape metrics did not influence the call emission rates of <i>P. cuvieri</i> males.
DOI: 10.34658/rdb.ldk6pv/gduecg
title: Live_Dead_Control_polistyrene.tif

description: :unav
DOI: 10.34658/rdb.ldk6pv/cxuopz
title: Live_Dead_Gel 3_cell on the material.tif

description: :unav
DOI: 10.34658/rdb.ldk6pv/nw55cq
title: AC099-3_1H-1-1.jdf

description: :unav
DOI: 10.34658/rdb.ldk6pv/c2kej9
title: Live_Dead_Gel 3_cells next to the material.tif

description: :unav
DOI: 10.34658/rdb.ldk6pv/ha3lmz
title: LDH_24h_BJ_proliferation.tab

description: :unav
DOI: 10.34658/rdb.ldk6pv/6fl8cn
title: WST_8_ 24h BJ_cytotoxicity.tab

description: :unav
DOI: 10.34658/rdb.ldk6pv/jekdfw
title: LDH_72h_BJ_proliferation.tab

description: :unav
DOI: 10.34658/rdb.ldk6pv/dtomuy
title: WST_8_ 48h BJ_cytotoxicity.tab

description: :unav
DOI: 10.34658/rdb.ldk6pv/olsami
title: conventional calibration analysis (from AC099-10h[Sequence5]) v2.afe6

description: :unav
DOI: 10.34658/rdb.ldk6pv/pbpbre
title: LDH_48h_BJ_proliferation.tab

description: :unav
DOI: 10.34658/rdb.ldk6pv/jjlizc
title: conventional calibration analysis (from AC099-10h[Sequence5]) v2.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/ddblre
title: Gel 22 60kDa 16eq amplitude.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/l2zdzd
title: Gel 22 60kDa 16eq frequency.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/ir8vlc
title: gel 25 60kDa 12 eq frequency.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/k71owd
title: Gel 7 60kDa 2.2eq amplitude.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/q8qylu
title: gel 25 60kDa 12 eq amplitude.txt

description: :unav
DOI: 10.34658/rdb.ldk6pv/fipapz
title: Gel 7 60kDa 2.2eq frequency.txt

description: :unav
DOI: 10.15468/79sxqw
title: Bird ringing data from Budongo Forest Reserve, Western Uganda

description: A collection of bird ringing data collected by Jeremy Lindsell during the course of his residence in the Budongo Forest at the Budongo Forest Project field station at Sonso, between October 1996 and May 2000. The work was conducted under a research permit from the Uganda National Council for Science and Technology.
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID programme, and coordinated by A Rocha Kenya.
DOI: 10.15468/9xxvrh
title: Checklist of small mammals of Mpanga Forest Reserve

description: The data on checklist of small mammals of Mpanga Forest reserve was collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996).
The purpose of sampling the small mammals, as with the other taxa, was to compile as complete a species list as possible to enable comparison between sites and assist with the identification of conservation needs and priorities in Uganda's forests. Uganda supports an extremely high number of mammal species, second to Zaire in Africa and ranked ninth in the world (McNeely et al; 1990). Over 125 species from the mammalian orders Insectivora, Macroscelidea and Rodentia (excluding families Sciuridae, Anomaluridae and Hystricidae) are recorded from Uganda (Davies and Vanden Berghe, 1994); including three national and twelve Albertine Rift endemic species.
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID Programme, and coordinated by A Rocha Kenya. 
The mobilized data was based on records collected between May,1993 and March,1995 using a combination of break back and Sherman traps.
DOI: 10.15468/w6wsk7
title: Checklist of small mammals of Bukaleba Forest Reserve, Uganda

description: The data on checklist of small mammals in Bukaleba Forest reserve was collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996).
The purpose of sampling the small mammals, as with the other taxa, was to compile as complete a species list as possible to enable comparison between sites and assist with the identification of conservation needs and priorities in Uganda's forests. Uganda supports an extremely high number of mammal species, second to Zaire in Africa and ranked ninth in the world (McNeely et al; 1990). Over 125 species from the mammalian orders Insectivora, Macroscelidea and Rodentia (excluding families Sciuridae, Anomaluridae and Hystricidae) are recorded from Uganda (Davies and Vanden Berghe, 1994); including three national and twelve Albertine Rift endemic species.
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID Programme, and coordinated by A Rocha Kenya. 
The mobilized data was based on records collected between May,1993 and March,1995 using a combination of break back and Sherman traps.
DOI: 10.15468/zyzwxt
title: Fisheries of Lake Tanganyika

description: The fishes of Lake Tanganyika documented between April 2022 - May 2022 in South Kivu Province, DRC.
DOI: 10.15468/xzqenv
title: Entomology: National Museum of Namibia

description: Specimen collection data from the Entomology Collection of the National Museum of Namibia, Windhoek. This will be updated as sections are completed for publication, but currently only includes the order Hemiptera.
DOI: 10.15468/8w3d26
title: Fisheries of northwestern Lake Tanganyika

description: The fishes of Lake Tanganyika documented between October 2022 - November 2023 in South Kivu Province, DRC.
DOI: 10.15468/jd7wr5
title: Checklist of Birds in Mabira forest reserve, Uganda

description: These data were collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996). 
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID programme, and coordinated by A Rocha Kenya. The mobilised data consist of observation records of birds from Mabira forest reserve. The data are based on observation records collected between May,1993 and March,1995
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID programme, and coordinated by A Rocha Kenya. The mobilised data consist of observation records of birds from Mabira forest reserve. The data are based on observation records collected between May,1993 and March,1995.
DOI: 10.15468/5wncsd
title: Checklist of trees and shrubs in Bukaleba forest reserve, Uganda

description: These data were collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996). 
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID Programme, and coordinated by ARocha Kenya.
The mobilized data consists of checklist of trees and shrubs from Bukaleba Forest Reserve. The data are based on fieldwork which involved a team of botanists surveying the reserve along a series of transects, observing and searching for new species of trees and shrubs between May,1993 and March,1995
DOI: 10.15468/3gsrff
title: Checklists of Birds in West Bugwe forest reserve, Uganda

description: These data were collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996). 
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID programme, and coordinated by A Rocha Kenya. The mobilised data consist of observation records of birds from West Bugwe forest reserve. The data are based on observation records collected between May,1993 and March,1995.
DOI: 10.15468/5g9xef
title: Checklist of small mammals of Mabira Central Forest Reserve, Uganda

description: The data on checklist of small mammals in Mabira Forest reserve was collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996).
The purpose of sampling the small mammals, as with the other taxa, was to compile as complete a species list as possible to enable comparison between sites and assist with the identification of conservation needs and priorities in Uganda's forests. Uganda supports an extremely high number of mammal species, second to Zaire in Africa and ranked ninth in the world (McNeely et al; 1990). Over 125 species from the mammalian orders Insectivora, Macroscelidea and Rodentia (excluding families Sciuridae, Anomaluridae and Hystricidae) are recorded from Uganda (Davies and Vanden Berghe, 1994); including three national and twelve Albertine Rift endemic species.
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID Programme, and coordinated by A Rocha Kenya. 
The mobilized data was based on records collected between May,1993 and March,1995 using a combination of break back and Sherman traps.
DOI: 10.15468/8k7bed
title: Checklist of Birds in Zika forest reserve, Uganda

description: These data were collected by the Forest Department of Uganda under the ‘Natural Forest Management and Conservation Project’ (No. 6100.37.42.015) and the project of ‘Institutional Support for the Protection of East African Biodiversity’ (UNO/RAF/006/GEF). These data were collected from 1993 to1995 and published in a series of reports edited by Howard and Davenport (1996). 
The data have been mobilized by the staff of the A Rocha Uganda and A Rocha International under the project "Raising the profile of data for the conservation of four forested African landscapes" funded by GBIF's BID programme, and coordinated by A Rocha Kenya. The mobilised data consist of observation records of birds from Kisubi (formerly Ziika) forest reserve. The data are based on observation records collected between May,1993 and March,1995