cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4236392.v1
title: 1-MeOH.cif from Arene guest selectivity and pore flexibility in a metal-organic framework with semi-fluorinated channel walls

description: CIF for 1-MeOH
DOI: 10.6084/m9.figshare.4236386
title: 2.cif from Arene guest selectivity and pore flexibility in a metal-organic framework with semi-fluorinated channel walls

description: CIF for 2
DOI: 10.6084/m9.figshare.4236383
title: 1.cif from Arene guest selectivity and pore flexibility in a metal-organic framework with semi-fluorinated channel walls

description: CIF for 1
DOI: 10.6084/m9.figshare.4236386.v1
title: 2.cif from Arene guest selectivity and pore flexibility in a metal-organic framework with semi-fluorinated channel walls

description: CIF for 2
DOI: 10.6084/m9.figshare.4236383.v1
title: 1.cif from Arene guest selectivity and pore flexibility in a metal-organic framework with semi-fluorinated channel walls

description: CIF for 1
DOI: 10.5281/zenodo.4013420
title: Lost in Zero Space -- An Empirical Comparison of Initial Development Releases in Four Software Package Distributions

description: <pre>The notebooks in "notebooks/" require the dependencies specified in "requirements.txt" to be installed. They rely on data files in "data/". These data can be obtained by running the "convert.py" scripts in that folder. The script requires data files from "data-raw/". These files can be generated by running "extract.py" in that folder. This script requires the libraries.io data dump, as explained in the README file contained in this folder. If you don't have these data, or if you don't want to download them, you can ask for the required data/*.csv.gz files by email.</pre>
DOI: 10.6084/m9.figshare.4236317
title: ESM_3_Data_supporting_the_manuscript.m from Bioinspired morphing wings for extended flight envelope and roll control of small drones

description: Data used in the manuscript
DOI: 10.6084/m9.figshare.4236317.v1
title: ESM_3_Data_supporting_the_manuscript.m from Bioinspired morphing wings for extended flight envelope and roll control of small drones

description: Data used in the manuscript
DOI: 10.6084/m9.figshare.4236305
title: Compiled dataset of aerodynamic forces and measures of posture from Wake analysis of drag components in gliding flight of a jackdaw (<i>Corvus monedula</i>) during moult

description: MoultStage: categorical moult stage; AirSpeed (m/s); Weight (N); Lift (N); LiftCoef (-); DragWeightSupport (-); WeightSupport (-); Dideal (N); DragInduced (N); SpanEfficiency (-); DragCoef_ind (-); DragProfile (N); DragCoef_pro (-); DragBody (N); DragCoef_bod (-); WingSpan (m); WingArea (m2); TailSpan (m); TailArea (m2); TailHeight (-); PrimSep 7-10 (-); BodyAngle (degrees); SpanRatio (-); SpanCamber (-);
DOI: 10.6084/m9.figshare.4236305.v2
title: Compiled dataset of aerodynamic forces and measures of posture from Wake analysis of drag components in gliding flight of a jackdaw (<i>Corvus monedula</i>) during moult

description: MoultStage: categorical moult stage; AirSpeed (m/s); Weight (N); Lift (N); LiftCoef (-); DragWeightSupport (-); WeightSupport (-); Dideal (N); DragInduced (N); SpanEfficiency (-); DragCoef_ind (-); DragProfile (N); DragCoef_pro (-); DragBody (N); DragCoef_bod (-); WingSpan (m); WingArea (m2); TailSpan (m); TailArea (m2); TailHeight (-); PrimSep 7-10 (-); BodyAngle (degrees); SpanRatio (-); SpanCamber (-);
DOI: 10.6084/m9.figshare.4236305.v1
title: Compiled dataset of aerodynamic forces and measures of posture from Wake analysis of drag components in gliding flight of a jackdaw (<i>Corvus monedula</i>) during moult

description: MoultStage: categorical moult stage; AirSpeed (m/s); Weight (N); Lift (N); LiftCoef (-); DragWeightSupport (-); WeightSupport (-); Dideal (N); DragInduced (N); SpanEfficiency (-); DragCoef_ind (-); DragProfile (N); DragCoef_pro (-); DragBody (N); DragCoef_bod (-); WingSpan (m); WingArea (m2); TailSpan (m); TailArea (m2); TailHeight (-); PrimSep 7-10 (-); BodyAngle (degrees); SpanRatio (-); SpanCamber (-);
DOI: 10.6084/m9.figshare.4236197
title: Supplementary Material for: Inflammatory Properties and Adjuvant Potential of Synthetic Glycolipids Homologous to Mycolate Esters of the Cell Wall of Mycobacterium tuberculosis

description: The cell wall of mycobacteria is characterised by glycolipids composed of different classes of mycolic acids (MAs; alpha-, keto-, and methoxy-) and sugars (trehalose, glucose, and arabinose). Studies using mutant <i>Mtb</i> strains have shown that the structure of MAs influences the inflammatory potential of these glycolipids. As mutant <i>Mtb </i>strains possess a complex mixture of glycolipids, we analysed the inflammatory potential of single classes of mycolate esters of the <i>Mtb</i> cell wall using 38 different synthetic analogues. Our results show that synthetic trehalose dimycolate (TDM) and trehalose, glucose, and arabinose monomycolates (TMM, GMM, and AraMM) activate bone marrow-derived dendritic cells in terms of the production of pro-inflammatory cytokines (IL-6 and TNF-α) and reactive oxygen species, upregulation of costimulatory molecules, and activation of NLRP3 inflammasome by a mechanism dependent on Mincle. These findings demonstrate that Mincle receptor can also recognise pentose esters and seem to contradict the hypothesis that production of GMM is an escape mechanism used by pathogenic mycobacteria to avoid recognition by the innate immune system. Finally, our experiments indicate that TMM and GMM, as well as TDM, can promote Th1 and Th17 responses in mice in an OVA immunisation model, and that further analysis of their potential as novel adjuvants for subunit vaccines is warranted.
DOI: 10.6084/m9.figshare.4236197.v1
title: Supplementary Material for: Inflammatory Properties and Adjuvant Potential of Synthetic Glycolipids Homologous to Mycolate Esters of the Cell Wall of Mycobacterium tuberculosis

description: The cell wall of mycobacteria is characterised by glycolipids composed of different classes of mycolic acids (MAs; alpha-, keto-, and methoxy-) and sugars (trehalose, glucose, and arabinose). Studies using mutant <i>Mtb</i> strains have shown that the structure of MAs influences the inflammatory potential of these glycolipids. As mutant <i>Mtb </i>strains possess a complex mixture of glycolipids, we analysed the inflammatory potential of single classes of mycolate esters of the <i>Mtb</i> cell wall using 38 different synthetic analogues. Our results show that synthetic trehalose dimycolate (TDM) and trehalose, glucose, and arabinose monomycolates (TMM, GMM, and AraMM) activate bone marrow-derived dendritic cells in terms of the production of pro-inflammatory cytokines (IL-6 and TNF-α) and reactive oxygen species, upregulation of costimulatory molecules, and activation of NLRP3 inflammasome by a mechanism dependent on Mincle. These findings demonstrate that Mincle receptor can also recognise pentose esters and seem to contradict the hypothesis that production of GMM is an escape mechanism used by pathogenic mycobacteria to avoid recognition by the innate immune system. Finally, our experiments indicate that TMM and GMM, as well as TDM, can promote Th1 and Th17 responses in mice in an OVA immunisation model, and that further analysis of their potential as novel adjuvants for subunit vaccines is warranted.
DOI: 10.6084/m9.figshare.4236179
title: Supplementary Material for: Central Obesity and Liver Iron Content: A Noninvasive Assessment in General Population by Magnetic Resonance Imaging

description: <b><i>Background/Aim:</i></b> Existing evidence points to an altered status of iron metabolism in obesity. We aimed to investigate whether central obesity is independently associated with estimated liver iron content (liver T2* value) in general population that used the noninvasive assessment method by MRI. <b><i>Methods:</i></b> The study was carried out on 200 subjects randomly selected from the Golestan Cohort Study who underwent abdominal MRI. Quantitative T2* maps of entire cross-sectional area of liver were calculated using a semi-automated software for estimating the levels of iron content. Segmentation and calculation of visceral (VFA) and subcutaneous fat area (SFA) were also performed. <b><i>Results:</i></b> There was no significant difference in mean liver T2* values between obese (body mass index, BMI &gt;30 kg/m<sup>2</sup>) and non-obese (BMI ≤30 kg/m<sup>2</sup>) subjects. After controlling for other covariates, no statistically significant association was detected between liver T2* values and VFA, SFA and VFA/SFA ratio. The drop in the relative signal intensity as an indicator of steatosis and serum ferritin predicted liver T2* values that almost had the same strength (standardized β of -0.41 and -0.41, respectively). <b><i>Conclusions:</i></b> Central obesity indices are not correlated with estimated liver iron content by MRI. Hepatic steatosis and serum ferritin seem to be the best predictors of hepatic T2* value. Since central obesity indices were not direct predictors of hepatic T2* value after the adjustment for confounding factors, it is possible that lipid accumulation in the liver locally, but not systematically, influences hepatic iron metabolism.
DOI: 10.6084/m9.figshare.4236179.v1
title: Supplementary Material for: Central Obesity and Liver Iron Content: A Noninvasive Assessment in General Population by Magnetic Resonance Imaging

description: <b><i>Background/Aim:</i></b> Existing evidence points to an altered status of iron metabolism in obesity. We aimed to investigate whether central obesity is independently associated with estimated liver iron content (liver T2* value) in general population that used the noninvasive assessment method by MRI. <b><i>Methods:</i></b> The study was carried out on 200 subjects randomly selected from the Golestan Cohort Study who underwent abdominal MRI. Quantitative T2* maps of entire cross-sectional area of liver were calculated using a semi-automated software for estimating the levels of iron content. Segmentation and calculation of visceral (VFA) and subcutaneous fat area (SFA) were also performed. <b><i>Results:</i></b> There was no significant difference in mean liver T2* values between obese (body mass index, BMI &gt;30 kg/m<sup>2</sup>) and non-obese (BMI ≤30 kg/m<sup>2</sup>) subjects. After controlling for other covariates, no statistically significant association was detected between liver T2* values and VFA, SFA and VFA/SFA ratio. The drop in the relative signal intensity as an indicator of steatosis and serum ferritin predicted liver T2* values that almost had the same strength (standardized β of -0.41 and -0.41, respectively). <b><i>Conclusions:</i></b> Central obesity indices are not correlated with estimated liver iron content by MRI. Hepatic steatosis and serum ferritin seem to be the best predictors of hepatic T2* value. Since central obesity indices were not direct predictors of hepatic T2* value after the adjustment for confounding factors, it is possible that lipid accumulation in the liver locally, but not systematically, influences hepatic iron metabolism.
DOI: 10.6084/m9.figshare.4236161
title: Data supporting Payne & Smith (in press) Ecology Letters

description: Data supporting Payne & Smith (in press) An alternative explanation for global trends in ectotherm thermal tolerance. Ecology Letters. doi: 10.1111/ele.12707<br>
DOI: 10.6084/m9.figshare.4236155
title: MKlein_etal_data.txt

description: The data file contains genotype data for 12 loci (LP3, LP4, LP9, LP11, LP13, LP14, LP15, LP17, LP20, LP21, LP23, LP24) of adults or recruits of the rocky reef fish <i>Lepadogaster lepadogaster. </i>Fish were sampled at seven sites (Arrábida Marine Park - ARR, Lisbon - LIS, Peniche - PEN, São Martinho do Porto - MAR, Sines - SIN, Almograve - ALM, Barranco - BAR) along the Portuguese coast in 2011 and 2012. For this study, approximately a 0.03 cm3 tissue sample from the dorsal fin was clipped from adult <i>L. lepadogaster</i> and stored in 96% ethanol. Adult fish were released directly back into the same location where they were collected. At ARR, juvenile fish were euthanized and fixed in 96% ethanol. L. lepadogaster is not a species of conservation concern (IUCN, 2014: Least Concern) and thus no specific permits were required, except for sampling at ARR. This permit was issued by the Portuguese Nature Conservation Institute (ICNF).
DOI: 10.6084/m9.figshare.4236155.v1
title: MKlein_etal_data.txt

description: The data file contains genotype data for 12 loci (LP3, LP4, LP9, LP11, LP13, LP14, LP15, LP17, LP20, LP21, LP23, LP24) of adults or recruits of the rocky reef fish <i>Lepadogaster lepadogaster. </i>Fish were sampled at seven sites (Arrábida Marine Park - ARR, Lisbon - LIS, Peniche - PEN, São Martinho do Porto - MAR, Sines - SIN, Almograve - ALM, Barranco - BAR) along the Portuguese coast in 2011 and 2012. For this study, approximately a 0.03 cm3 tissue sample from the dorsal fin was clipped from adult <i>L. lepadogaster</i> and stored in 96% ethanol. Adult fish were released directly back into the same location where they were collected. At ARR, juvenile fish were euthanized and fixed in 96% ethanol. L. lepadogaster is not a species of conservation concern (IUCN, 2014: Least Concern) and thus no specific permits were required, except for sampling at ARR. This permit was issued by the Portuguese Nature Conservation Institute (ICNF).
DOI: 10.6084/m9.figshare.4236161.v1
title: Data supporting Payne & Smith (in press) Ecology Letters

description: Data supporting Payne & Smith (in press) An alternative explanation for global trends in ectotherm thermal tolerance. Ecology Letters. doi: 10.1111/ele.12707<br>
DOI: 10.6084/m9.figshare.4236143
title: Levels of dioxins and dioxin-like PCBs in food of animal origin in the Netherlands during the period 2001–2011

description: The aim of this study was to assess levels of dioxins (polychlorinated dibenzo-p-dioxins and dibenzofurans, PCDD/Fs) and dioxin-like polychlorinated biphenyls (PCBs) (DL-PCBs) in food of animal origin produced in the Netherlands, including potential trends in time. Test results from about 2500 samples of animal derived food products (beef, veal, lamb, chicken, pork, deer, milk and eggs), sampled for the National Residue Monitoring Plan from 2001–2011, were evaluated. Most samples were screened with a bioassay and, if suspected, analysed by GC-HRMS. The fraction of samples which were non-compliant with European maximum levels was rather low, being below 1% for most food products, except for lamb. Exceedance of action levels was particularly observed for lamb and beef. To obtain an insight into background levels, a randomly taken part of the samples was directly analysed by GC-HRMS. In general, only minor decreases in mean PCDD/F and DL-PCB concentrations could be observed for the period 2001–2011. This may be due to a plateauing of current background levels but also to factors like the sensitivity of the analytical method.
DOI: 10.6084/m9.figshare.4236143.v1
title: Levels of dioxins and dioxin-like PCBs in food of animal origin in the Netherlands during the period 2001–2011

description: The aim of this study was to assess levels of dioxins (polychlorinated dibenzo-p-dioxins and dibenzofurans, PCDD/Fs) and dioxin-like polychlorinated biphenyls (PCBs) (DL-PCBs) in food of animal origin produced in the Netherlands, including potential trends in time. Test results from about 2500 samples of animal derived food products (beef, veal, lamb, chicken, pork, deer, milk and eggs), sampled for the National Residue Monitoring Plan from 2001–2011, were evaluated. Most samples were screened with a bioassay and, if suspected, analysed by GC-HRMS. The fraction of samples which were non-compliant with European maximum levels was rather low, being below 1% for most food products, except for lamb. Exceedance of action levels was particularly observed for lamb and beef. To obtain an insight into background levels, a randomly taken part of the samples was directly analysed by GC-HRMS. In general, only minor decreases in mean PCDD/F and DL-PCB concentrations could be observed for the period 2001–2011. This may be due to a plateauing of current background levels but also to factors like the sensitivity of the analytical method.
DOI: 10.6084/m9.figshare.4236137
title: Database_As Far as the Eye Can See: Relationship between Psychopathic Traits and Pupil Response to Affective Stimuli.sav

description: Database ('Database_As far as the eye can see') used in the publication of article titled 'As far as the eye can see: Relationship between psychopathic traits and pupil response to affective stimuli'.<br>A secondary database ('Database_ValenceArousal_IAPS_IADS_As Far as the Eye Can See' displays data used to assess the relationship between subjective valence/arousal and pupil responses within the article.<br><br>Psychopathic individuals show a range of affective processing deficits, typically associated with the interpersonal/affective component of psychopathy. However, previous research has been inconsistent as to whether psychopathy, within both offender and community populations, is associated with deficient autonomic responses to the simple presentation of affective stimuli. Changes in pupil diameter occur in response to emotionally arousing stimuli and can be used as an objective indicator of physiological reactivity to emotion. This study used pupillometry to explore whether psychopathic traits within a community sample were associated with hypo-responsivity to the affective content of stimuli. Pupil activity was recorded for 102 adult (52 female) community participants in response to affective (both negative and positive affect) and affectively neutral stimuli, that included images of scenes, static facial expressions, dynamic facial expressions and sound-clips. Psychopathic traits were measured using the Triarchic Psychopathy Measure. Pupil diameter was larger in response to negative stimuli, but comparable pupil size was demonstrated across pleasant and neutral stimuli. A linear relationship between subjective arousal and pupil diameter was found in response to sound-clips, but was not evident in response to scenes. Contrary to predictions, psychopathy was unrelated to emotional modulation of pupil diameter across all stimuli. The findings were the same when participant gender was considered. This suggests that psychopathy within a community sample is not associated with autonomic hypo-responsivity to affective stimuli, and this effect is discussed in relation to later defensive/appetitive mobilisation deficits.
DOI: 10.6084/m9.figshare.4236137.v2
title: Database_As Far as the Eye Can See: Relationship between Psychopathic Traits and Pupil Response to Affective Stimuli.sav

description: Database ('Database_As far as the eye can see') used in the publication of article titled 'As far as the eye can see: Relationship between psychopathic traits and pupil response to affective stimuli'.<br>A secondary database ('Database_ValenceArousal_IAPS_IADS_As Far as the Eye Can See' displays data used to assess the relationship between subjective valence/arousal and pupil responses within the article.<br><br>Psychopathic individuals show a range of affective processing deficits, typically associated with the interpersonal/affective component of psychopathy. However, previous research has been inconsistent as to whether psychopathy, within both offender and community populations, is associated with deficient autonomic responses to the simple presentation of affective stimuli. Changes in pupil diameter occur in response to emotionally arousing stimuli and can be used as an objective indicator of physiological reactivity to emotion. This study used pupillometry to explore whether psychopathic traits within a community sample were associated with hypo-responsivity to the affective content of stimuli. Pupil activity was recorded for 102 adult (52 female) community participants in response to affective (both negative and positive affect) and affectively neutral stimuli, that included images of scenes, static facial expressions, dynamic facial expressions and sound-clips. Psychopathic traits were measured using the Triarchic Psychopathy Measure. Pupil diameter was larger in response to negative stimuli, but comparable pupil size was demonstrated across pleasant and neutral stimuli. A linear relationship between subjective arousal and pupil diameter was found in response to sound-clips, but was not evident in response to scenes. Contrary to predictions, psychopathy was unrelated to emotional modulation of pupil diameter across all stimuli. The findings were the same when participant gender was considered. This suggests that psychopathy within a community sample is not associated with autonomic hypo-responsivity to affective stimuli, and this effect is discussed in relation to later defensive/appetitive mobilisation deficits.
DOI: 10.6084/m9.figshare.4236137.v1
title: Database_As Far as the Eye Can See.sav

description: Database ('Database_As far as the eye can see') used for the publication of article titled 'As far as the eye can see: Relationship between psychopathic traits and pupil response to affective stimuli'.<br>A secondary database ('Database_ValenceArousal_IAPS_IADS_As Far as the Eye Can See' displays data used to assess the relationship between subjective valence/arousal and pupil responses within the article.<br><br>Psychopathic individuals show a range of affective processing deficits, typically associated with the interpersonal/affective component of psychopathy. However, previous research has been inconsistent as to whether psychopathy, within both offender and community populations, is associated with deficient autonomic responses to the simple presentation of affective stimuli. Changes in pupil diameter occur in response to emotionally arousing stimuli and can be used as an objective indicator of physiological reactivity to emotion. This study used pupillometry to explore whether psychopathic traits within a community sample were associated with hypo-responsivity to the affective content of stimuli. Pupil activity was recorded for 102 adult (52 female) community participants in response to affective (both negative and positive affect) and affectively neutral stimuli, that included images of scenes, static facial expressions, dynamic facial expressions and sound-clips. Psychopathic traits were measured using the Triarchic Psychopathy Measure. Pupil diameter was larger in response to negative stimuli, but comparable pupil size was demonstrated across pleasant and neutral stimuli. A linear relationship between subjective arousal and pupil diameter was found in response to sound-clips, but was not evident in response to scenes. Contrary to predictions, psychopathy was unrelated to emotional modulation of pupil diameter across all stimuli. The findings were the same when participant gender was considered. This suggests that psychopathy within a community sample is not associated with autonomic hypo-responsivity to affective stimuli, and this effect is discussed in relation to later defensive/appetitive mobilisation deficits.