cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.24522526.v1
title: Additional file 1 of Early detection of hepatocellular carcinoma via no end-repair enzymatic methylation sequencing of cell-free DNA and pre-trained neural network

description: Additional file 1. Samples_information.
DOI: 10.1594/pangaea.866876
title: SOCAT V4 metadata list with links to data in original SOCAT format and cruise documentation files
DOI: 10.6084/m9.figshare.24522658
title: Additional file 1 of Isolation of a novel multiple-heavy metal resistant Lampropedia aestuarii GYF-1 and investigation of its bioremediation potential

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24522658.v1
title: Additional file 1 of Isolation of a novel multiple-heavy metal resistant Lampropedia aestuarii GYF-1 and investigation of its bioremediation potential

description: Supplementary Material 1
DOI: 10.6084/m9.figshare.24522851.v1
title: Additional file 2 of Isolation of a novel multiple-heavy metal resistant Lampropedia aestuarii GYF-1 and investigation of its bioremediation potential

description: Supplementary Material 2
DOI: 10.6084/m9.figshare.26636823
title: Additional file 4 of Isolation of a novel multiple-heavy metal resistant Lampropedia aestuarii GYF-1 and investigation of its bioremediation potential

description: Supplementary Material 4
DOI: 10.6084/m9.figshare.26636823.v1
title: Additional file 4 of Isolation of a novel multiple-heavy metal resistant Lampropedia aestuarii GYF-1 and investigation of its bioremediation potential

description: Supplementary Material 4
DOI: 10.1594/pangaea.744228
title: Physical oceanography during Explorer cruise Explorer77/1 to the North Sea
DOI: 10.1594/pangaea.842179
title: Ice rafted debris of IODP Site 306-U1314

description: Sediment depth is given in mcd, Age tuned to LR04 stack (Lisiecki and Raymo, 2005, doi:10.1029/2004PA001071)
DOI: 10.1594/pangaea.707796
title: (Table 1) Trace element abundances and Sr and Nd isotope compositions in bulk sediments from DSDP Hole 6-59
DOI: 10.1594/pangaea.57902
title: Ice rafted debris (&gt; 2 mm gravel) distribution in sediment core PS56/204-1
DOI: 10.1594/pangaea.93606
title: Color measurements on sediment core PS2496-3
DOI: 10.1594/pangaea.816232
title: Mg/Ca ratios of Neogloboquadrina pachyderma (s) and Globigerina bulloides in Irminger Sea sediment trap time series

description: iven the importance of high-latitude areas in the ocean-climate system, there is need for a paleothermometer that is reliable at low temperatures. Here we assess the applicability of the Mg/Ca-temperature proxy in colder waters (5-10 °C) by comparing for the first time the seasonal Mg/Ca and d18O cycles of N. pachyderma (s) and G. bulloides using a sediment trap time-series from the northern North Atlantic. While both species show indistinguishable seasonal d18O patterns that clearly track the near surface temperature cycle, their Mg/Ca are very different. G. bulloides Mg/Ca is high (2.0-3.1 mmol/mol), but varies in concert with the seasonal temperature cycle. The Mg/Ca of N. pachyderma (s), on the other hand, is low (1.1-1.5 mmol/mol) and shows only a very weak seasonal cycle. The d18O patterns indicate that both species calcify in the same depth zone. Consequently, depth habitat differences cannot explain the contrasting Mg/Ca patterns. The elevated Mg/Ca in pristine G. bulloides might be due to the presence of high Mg phases that are not preserved in fossil shells. The contrasting absence of a seasonal trend in the Mg/Ca of N. pachyderma (s) confirms other studies where calcification temperatures were less well constrained. The reason for this absence is not fully known, but may include species-specific vital effects. The very different seasonal patterns of both species' Mg/Ca underscore the importance of parameters other than temperature in controlling planktonic foraminiferal Mg/Ca. Our results therefore lend further caution in the interpretation of Mg/Ca-temperature reconstructions from high northern latitudes.
description: Supplement to: Jonkers, Lukas; Jimenez-Amat, Patricia; Mortyn, P Graham; Brummer, Geert-Jan A (2013): Seasonal Mg/Ca variability of N. pachyderma (s) and G. bulloides: Implications for seawater temperature reconstruction. Earth and Planetary Science Letters, 376, 137-144
DOI: 10.1594/pangaea.820777
title: Downwelling spectral solar irradiance as measured above water surface at radiometer station PS73/017-3
DOI: 10.1594/pangaea.787737
title: (Table T1) Stratigraphic distribution of calcareous nannofossil taxa of ODP Hole 173-1067A

description: Sediment depth is given in mbsf. Abundance estimate as follows: V = very abundant, A = abundant, C = common, F = few, R = rare, B = barren, - = not found.
DOI: 10.1594/pangaea.263568
title: Minor-element chemical analyses of Hole 74-527
DOI: 10.15468/dl.5r3nhp
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "POLYGON ((148.290899 -33.916588, 148.290899 -33.930063, 148.293145 -33.930063, 148.293145 -33.923326, 148.299882 -33.923326, 148.299882 -33.918834, 148.297636 -33.918834, 148.297636 -33.916588, 148.290899 -33.916588))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069956-240626123714530/datasets/export for details.
DOI: 10.1594/pangaea.721823
title: (Table spinel) Average compositions and analyses range for spinel from the MARK area at ODP Site 153-920D
DOI: 10.1594/pangaea.376740
title: Radiosonde PS18/06225 during POLARSTERN cruise ANT-IX/1 on 1990-10-22 19:37h

description: Height of tropopause 10729 m, precipitable water content 1.7095 cm
DOI: 10.6084/m9.figshare.26636865
title: Additional file 3 of Effectiveness of single-session therapy for adult common mental disorders: a systematic review

description: Additional file 3. Extended characteristics of the six randomised trials.
DOI: 10.1594/pangaea.852971
title: Underway physical oceanography and carbon dioxide measurements during Benguela Stream cruise 642B20130518

description: Cruise QC flag: A (see further details). The Fair Data Use Statement for SOCAT can be found at hdl:10013/epic.48576.d001
DOI: 10.1594/pangaea.832578
title: Gridded results in 100 m resolution of swath bathymetry during James Cook cruise JC094, section TRS_3_c

description: In order to download data, please request access from Laura Robinson (mailto:laura.robinson@bristol.ac.uk).
DOI: 10.1594/pangaea.53159
title: Stable isotope ratios of foraminifera from ODP Site 108-664 in the equatorial Atlantic

description: Most of the data were generated at either Woods Hole Oceanographic Institution (WHOI) (Finnigan MAT 252) or University of California (CAL) at Berkeley (VG Prism II). A smaller amount was analyzed at Cambridge University (VG Prism II) and at the Massachusett Institute of Technology (MIT) (VG Prism III).
DOI: 10.1594/pangaea.708374
title: (Appendix 1) Sr/Ca ratios of benthic foraminifera from ODP Site 154-926
DOI: 10.1594/pangaea.94387
title: Carbon analysis on sediment core PS2495-3
DOI: 10.1594/pangaea.835304
title: Geochemistry, sediment components, and paleoproductivity reconstruction for the Miocene to early Pliocene of ODP Hole 162-982B
DOI: 10.1594/pangaea.250373
title: (Table 1) Distribution of planktonic and selected benthic foraminifers from DSDP Site 87-582

description: Species abundance: A = abundant (&gt;100 specimens/sample), C = common (32-100 specimens), F = few (10-32 specimens), R = rare (1-9 specimens), X = present, - = absent.
DOI: 10.1594/pangaea.839376
title: Total Sky Imager observations during METEOR curise M96 on 2013-05-18 with links to images

description: Dataset consists of total sky images taken every 15 seconds during daytime. The imager was mounted at the top of the bridge of the Research Vessel METEOR. Each file is a jpg-image and all the necessary information on the aperture or exposition is written in the jpg-header.
DOI: 10.1594/pangaea.316318
title: Ingestion and clearance rates of Copepods for Rhizolsolenia chunii during Polarstern cruise ANT-XVIII/2

description: Mesozooplankton for experiments was sampled with a 300 µm Bongo net towed vertically over a depth range between depth top and depth bottom at 0.3 m/sec
DOI: 10.1594/pangaea.772154
title: (Table 1) Stable oxygen isotope ratios of benthic foraminifera from Pacific Ocean deep-sea sediments

description: The thermal structure of the Pacific Ocean between water depths of about 1 and 4.5 kilometers is estimated from the oxygen isotopic ratio of benthonic foraminifera from deep-drilled and piston cores of early Pliocene age (about 3 to 5 million years ago). The ratio of oxygen-18 to oxygen-16 in the early Pliocene at each site varies by an average of only ± 0.12 per mil (1 standard deviation). A plot of the oxygen isotopic ratio against modern bottom-water temperature is adequately fit by a line having a slope of - 0.26 per mil per degree Celsius (the equilibrium temperature dependence of calcite-water fractionation), suggesting that the temperature gradient of the Pacific Ocean during the early Pliocene was similar to that of today.
description: Supplement to: Keigwin, Lloyd D; Bender, Michael L; Kennett, James P (1979): Thermal structure of the deep Pacific Ocean in the early Pliocene. Science, 205(4413), 1386-1388
DOI: 10.6084/m9.figshare.24522613
title: Additional file 1 of Systematic analysis of various RNA transcripts and construction of biological regulatory networks at the post-transcriptional level for chronic obstructive pulmonary disease

description: Additional file 1: Table S1. Primers sequences for validation of hub genes. Table S2. Differentially expressed mRNAs in non-smokers and smokers. Table S3. Differentially expressed circRNAs in non-smokers and smokers. Table S4. Differentially expressed lncRNAs in non-smokers and smokers. Table S5. Differentially expressed miRNAs in non-smokers and smokers. Table S6. Differentially expressed mRNAs in smokers and COPD patients. Table S7. Differentially expressed circRNAs in smokers and COPD patients. Table S8. Differentially expressed lncRNAs in smokers and COPD patients. Table S9. Differentially expressed miRNAs in smokers and COPD patients. Table S10. GSEA enrichment analysis of gene expression data in smokers and COPD patients.
DOI: 10.6084/m9.figshare.24522613.v1
title: Additional file 1 of Systematic analysis of various RNA transcripts and construction of biological regulatory networks at the post-transcriptional level for chronic obstructive pulmonary disease

description: Additional file 1: Table S1. Primers sequences for validation of hub genes. Table S2. Differentially expressed mRNAs in non-smokers and smokers. Table S3. Differentially expressed circRNAs in non-smokers and smokers. Table S4. Differentially expressed lncRNAs in non-smokers and smokers. Table S5. Differentially expressed miRNAs in non-smokers and smokers. Table S6. Differentially expressed mRNAs in smokers and COPD patients. Table S7. Differentially expressed circRNAs in smokers and COPD patients. Table S8. Differentially expressed lncRNAs in smokers and COPD patients. Table S9. Differentially expressed miRNAs in smokers and COPD patients. Table S10. GSEA enrichment analysis of gene expression data in smokers and COPD patients.
DOI: 10.1594/pangaea.52453
title: (Table 3) Stable carbon and oxygen isotope ratios of foraminifera in sediment core PAR87A-02
DOI: 10.1594/pangaea.913865
title: Magnesium/Calcium ratios of benthic foraminifera of ODP Site 154-926A
DOI: 10.1594/pangaea.832579
title: Gridded results in 100 m resolution of swath bathymetry during James Cook cruise JC094, section TRS_4

description: In order to download data, please request access from Laura Robinson (mailto:laura.robinson@bristol.ac.uk).
DOI: 10.6084/m9.figshare.24522546
title: Additional file 1 of Comprehensive mapping of exon junction complex binding sites reveals universal EJC deposition in Drosophila

description: Additional file 1. Figure S1. Complexity for human and Drosophila eIF4A3 eCLIP libraries a) Bar plot displaying the read counts at successive steps of read analysis for each sample, including raw reads, uniquely mapped reads, deduplicated reads, and reads that intersect coding exons in the human data. Note that SMInput 2 appears as having 0 reads, due to very low output and plot scale b) The same as a) for Drosophila eCLIP data. c) Venn diagram depicting the similarity of eCLIP binding sites after PureCLIP binding site discovery for all Drosophila replicates. The Jaccard index (JI) on the right of each Venn diagram is calculated based on the values presented in the Venn diagram. Figure S2. Comparison of human and Drosophila transcriptomes and validation of CRISPR editing of Drosophila S2R+ cells a) Distribution of the number of exons per transcript in D. melanogaster and H. sapiens. b) Total number of annotated exons in D. melanogaster and H. sapiens. Drosophila annotations were obtained from the FlyBase consortium, version BDGP6. Human annotations were obtained from Ensembl, version GRCh38; only the longest isoform and with experimental evidence were used for quantification. c) Western blot to validate expression of endogenous eIF4A3 cells fused to 3xHA in S2R+. Anti-HA membrane (right) with lane 1 from a modified and single isolated clone, and lane 2 with wild-type cells. Anti-eIF4A3 Drosophila membrane (left) with lane 1 from a modified and single isolated clone and lane 2 with wild-type cells. The red arrow points to the expected size for endogenous eIF4A3, which becomes fainter in the S2 HA (lane 1). The blue arrow points to the expected size for eIF4A3-HA, which appears only upon CRISPR-cas9 and is absent in the wild type, with expression levels similar to eIF4A3-WT in WT cells. d) Co-IP of Y14-FLAG pulled down by eIF4A3-HA. Lane 1: input, with both proteins expressed. Lane 2: IP of eIF4A3 co-precipitates Y14-FLAG. Figure S3. eCLIP biases a) The scatter plot displays the Stop Rate scores per position for replicates 1 and 2 of Drosophila eIF4A3 eCLIP. The Spearman correlation score is shown on top. b) As in a) but for Drosophila eIF4A3 eCLIP datasets analyzed by PureCLIP. c) Boxplot showing the correlation between expression level and U count for EJC detection. Exons were divided in 10 different classes of equal bins and further divided into 7 classes depending on its U count in the EJC interacting window. SRD scores (y-axis) were plotted. Figure S4. ipaRt biasesa) IGV screenshot comparing eCLIP replicate 1 and ipaRt replicate 1, illustrating differences in both overall enrichment and background noise for the Galk gene. b) Stacked bar plot showing the count of detected exons versus total exons per exon group, including first exons, internal exons and last exons. c) Box plot comparing T counts in the window for detected and undetected exons in ipaRTs.
DOI: 10.6084/m9.figshare.24522546.v1
title: Additional file 1 of Comprehensive mapping of exon junction complex binding sites reveals universal EJC deposition in Drosophila

description: Additional file 1. Figure S1. Complexity for human and Drosophila eIF4A3 eCLIP libraries a) Bar plot displaying the read counts at successive steps of read analysis for each sample, including raw reads, uniquely mapped reads, deduplicated reads, and reads that intersect coding exons in the human data. Note that SMInput 2 appears as having 0 reads, due to very low output and plot scale b) The same as a) for Drosophila eCLIP data. c) Venn diagram depicting the similarity of eCLIP binding sites after PureCLIP binding site discovery for all Drosophila replicates. The Jaccard index (JI) on the right of each Venn diagram is calculated based on the values presented in the Venn diagram. Figure S2. Comparison of human and Drosophila transcriptomes and validation of CRISPR editing of Drosophila S2R+ cells a) Distribution of the number of exons per transcript in D. melanogaster and H. sapiens. b) Total number of annotated exons in D. melanogaster and H. sapiens. Drosophila annotations were obtained from the FlyBase consortium, version BDGP6. Human annotations were obtained from Ensembl, version GRCh38; only the longest isoform and with experimental evidence were used for quantification. c) Western blot to validate expression of endogenous eIF4A3 cells fused to 3xHA in S2R+. Anti-HA membrane (right) with lane 1 from a modified and single isolated clone, and lane 2 with wild-type cells. Anti-eIF4A3 Drosophila membrane (left) with lane 1 from a modified and single isolated clone and lane 2 with wild-type cells. The red arrow points to the expected size for endogenous eIF4A3, which becomes fainter in the S2 HA (lane 1). The blue arrow points to the expected size for eIF4A3-HA, which appears only upon CRISPR-cas9 and is absent in the wild type, with expression levels similar to eIF4A3-WT in WT cells. d) Co-IP of Y14-FLAG pulled down by eIF4A3-HA. Lane 1: input, with both proteins expressed. Lane 2: IP of eIF4A3 co-precipitates Y14-FLAG. Figure S3. eCLIP biases a) The scatter plot displays the Stop Rate scores per position for replicates 1 and 2 of Drosophila eIF4A3 eCLIP. The Spearman correlation score is shown on top. b) As in a) but for Drosophila eIF4A3 eCLIP datasets analyzed by PureCLIP. c) Boxplot showing the correlation between expression level and U count for EJC detection. Exons were divided in 10 different classes of equal bins and further divided into 7 classes depending on its U count in the EJC interacting window. SRD scores (y-axis) were plotted. Figure S4. ipaRt biasesa) IGV screenshot comparing eCLIP replicate 1 and ipaRt replicate 1, illustrating differences in both overall enrichment and background noise for the Galk gene. b) Stacked bar plot showing the count of detected exons versus total exons per exon group, including first exons, internal exons and last exons. c) Box plot comparing T counts in the window for detected and undetected exons in ipaRTs.
DOI: 10.1594/pangaea.689086
title: Radiosonde M2_R117 during METEOR cruise M2 on 1965-09-24 05:00h

description: Height of tropause 16900 m; Data processing by Wolfgang Gloeden, Maritime Klimaüberwachung (KU24), Deutscher Wetterdienst, http://www.dwd.de
DOI: 10.1594/pangaea.810682
title: (Table 1) Benthic foraminifera in late Miocene sediments of DSDP Hole 89-586B

description: Abundances: X = present, A = very abundant, - = absent.
DOI: 10.1594/pangaea.810683
title: (Table 2) Benthic foraminifera in Pliocene sediments of DSDP Hole 89-586B

description: Abundances: X = present, A = very abundant, - = absent.
DOI: 10.1594/pangaea.689143
title: Radiosonde M2_R174 during METEOR cruise M2 on 1965-10-03 06:55h

description: Height of tropause 15080 m; Data processing by Wolfgang Gloeden, Maritime Klimaüberwachung (KU24), Deutscher Wetterdienst, http://www.dwd.de
DOI: 10.1594/pangaea.875438
title: (Table 3-5) Stable carbon isotopes, Cd/Ca ratios and P reconstruction for surface sediments
DOI: 10.15129/4623bfbd-4f9e-49aa-b697-1f5a9087ec06
title: Data for: "Gigabit Per Second UV-C LEDs for Communications"

description: IPC submission 2023 

We explore the modulation bandwidth, data communication capabilities and nanosecond pulsed performance of Ultraviolet-C (UV-C) AlGaN LEDs with peak emission wavelengths ranging from 235-275 nm. Data rates from 0.5 to 2 Gbps were achieved with -3dB modulation bandwidths up to ~100MHz.
DOI: 10.1594/pangaea.689142
title: Radiosonde M2_R173 during METEOR cruise M2 on 1965-10-03 02:58h

description: Height of tropause 15910 m; Data processing by Wolfgang Gloeden, Maritime Klimaüberwachung (KU24), Deutscher Wetterdienst, http://www.dwd.de
DOI: 10.1594/pangaea.875515
title: (Table A7) Cd/Ca and stable carbon isotopic ratios of benthic foraminifera from North Atlantic surface sediments

description: Stable isotopes measured by R. Tiedemann, GEOMAR.
DOI: 10.1594/pangaea.375693
title: Radiosonde PS06/01095 during POLARSTERN cruise ANT-III/1 on 1984-10-24 05:19h

description: Height of tropopause 17065 m, precipitable water content 3.9962 cm
DOI: 10.1594/pangaea.406269
title: Water temperature and current velocity from surface drifter SVP_9619675
DOI: 10.1594/pangaea.852968
title: Underway physical oceanography and carbon dioxide measurements during Benguela Stream cruise 642B20130214

description: Cruise QC flag: B (see further details). The Fair Data Use Statement for SOCAT can be found at hdl:10013/epic.48576.d001
DOI: 10.1594/pangaea.839438
title: Continuous liquid water path (LWP) and integrated water vapour (IWV) measurements during METEOR cruise M96 on 2013-05-18

description: Our microwave radiometer HATPRO (Humidity and Temperature PROfiler) was measuring during the cruise. The instrument measures emitted microwave radiation at 14 wavelenghts in two spectral bands. An algorithm provides liquid water path and integrated water vapour.
DOI: 10.1594/pangaea.833764
title: Evaluation of long chain 1,14-alkyl diols in marine surface sediments

description: #0 = coeluting
DOI: 10.1594/pangaea.323745
title: Abundance of broken diatom frustules measured on water bottle samples at station PS58/042-2
DOI: 10.1594/pangaea.869326
title: Data derived from the 33 phosphorus experiment at CTD station MSM17/4_477
DOI: 10.1594/pangaea.872471
title: Dead planktonic foraminifera faunal data from NE Atlantic multinet hauls

description: Size fraction of planktonic foraminiferas counted by Meggers is &gt;125 µm, counted by Rebotim is &gt;100 µm.
DOI: 10.1594/pangaea.869792
title: (Tab. DA-2) Geochemistry and productivity reconstruction of surface sediments of the East Atlantic
DOI: 10.1594/pangaea.314629
title: Continuous thermosalinograph oceanography along cruise track M22/5
DOI: 10.1594/pangaea.788018
title: (Table T1) Diatom biostratigraphy of ODP Core 172-1063D-1H

description: Sediment depth is given in mbsf. Abundance estimate as follows: A = abundant, C = common, F = frequent, R = rare, X = scarce, B = barren, - = not found.
DOI: 10.1594/pangaea.716292
title: Biomass of zooplankton during VALDIVIA cruise VA53
DOI: 10.1594/pangaea.872476
title: Environmental data from NE Atlantic multinet hauls
DOI: 10.1594/pangaea.875522
title: Grain size analysis on sediment core PS56/220-1
DOI: 10.1594/pangaea.314615
title: Continuous thermosalinograph oceanography along cruise track M18/1
DOI: 10.1594/pangaea.832832
title: Master tracks in different resolutions of James Cook cruise JC094 (TROPICS), Santa Cruz de Tenerife - Port of Spain, 2013-10-13 - 2013-11-30
DOI: 10.1594/pangaea.920348
title: Continuous water level observations at station BEFmate_I4upp (2017-07)
DOI: 10.1594/pangaea.838321
title: Porewater geochemistry of sediment core M86/5_8