cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.p021fq5/1
title: Skaien and Arcese_P. congesta geographic data_Journal Ecology

description: Tab 1 (“Geographic Survey Fruit Frequency”): Data were collected throughout the Georgia Basin from 2005 to 2014 (“Year”) from April to June of each year. Populations that were surveyed more than once were assessed for changes over time, and only the most recent measurement was included in the data set. The study species is seablush, Plectritis congesta. “Area” and “Location” together represent each population. “Isl.Main” represents whether a population was on an island or the mainland (with Vancouver Island considered as part of the mainland). “Deer” represents whether the island had deer present, absent or rarely hosted deer.  UTM coordinates are represented by “N” for Northing and “E” for Easting. The number of wingless fruits in each set of 100 (“value”; from counts of 20 individuals in 5 different areas of the population) is represented by “sum.ww”. Together, “value” and “sum.ww” create the proportion of plants bearing wingless fruits (“Freq.of.ww”). “PC1” and “PC2” represent the values from the Principal Components Analysis (PCA) for climatic variables (see Appendix). The amount of land in a 1 km buffer (“1km_Area_Land”) was transformed into a percentage (“1km_Percent_Land”). From this, we also have the percentage of land area that is water in a 1 km radius of the center of the surveyed population (“1km_Percent_Water”). 

Tab 2 (“1 m belt transects”): Data were collected from May to June 2014. “Location” represents the population sampled, accompanied by UTM GPS coordinates (“N” for Northing and “E” for Easting). The average measured heights of 20-40 plants along each transect is represented by “avheight”, with the standard deviation of height represented by “stdevheight”. The average depth of 5 measurements at 20 cm intervals along the 1 m belt transect is represented by “avdepth”, and the standard deviation in depth is represented by “stdevdepth”.  The “Freq.of.ww” represents the proportion of fruits that were wingless from the total count of 100 (“value”). “PC1” represents values from the Principal Components Analysis (PCA) for climatic variables (see Appendix). “1km_Percent_Water” represents the percentage of land cover that was water in a 1 km radius of the center of the surveyed population.
DOI: 10.5061/dryad.p64s1hh/1
title: Full dataset of physiological and ecological measurements.

description: This file includes the full dataset of physiological and ecological measurements conducted on guppies from all combinations of ancestral, acclimation and acute thermal treatments.
DOI: 10.5061/dryad.p725tq4/1
title: Copy of DB de Swardt Raw Data
DOI: 10.5061/dryad.pj3133r/1
title: Incubation temperature in wood ducks

description: Data were collected from incubating wood duck hens nesting in nest boxes at the Savannah River Site in Aiken, SC, USA in Spring-Summer 2014. Two types of temperature loggers (6 mobile and 1 stationary) were installed into nest boxes to record egg temperature when hens were incubating. Both logger types were modified and inserted into artificial eggs filled with wire-pulling lubricant to mimic the thermal properties of real eggs. We also recorded ambient temperature within the nest box, and measured hen body mass and tarsus length. Averages and standard deviations in temperature were calculated for each nest from the entire incubation period (~30 d). Averages and standard deviations for the mobile loggers are averages of the 6 loggers in each nest. Logger type: M = mobile; ST = stationary. Clutch size includes all fake eggs (i.e., temperature loggers). All average incubation temperatures and standard deviations in temperature reflect a correction for slight differences between temperature recording devices. In three nests, one or two mobile loggers were pushed to the side of the nest either in the middle or end of incubation. 'Excluding pushed loggers' indicates that these pushed eggs were removed from the mean and standard deviation in temperature calculations for their respective nests.
DOI: 10.5061/dryad.qd300cb/1
title: Scripts, results, and LINE VCFs

description: Note: Filenames containing "PositiveSelection" actually refer to negative selection experiments, and likewise, filenames containing only "Selection" actually refer to positive selection experiments, due to an initial naming confusion earlier in the project.
DOI: 10.5061/dryad.qd300cb/2
title: Carolina_Anole_House_Mouse_Threespine_Stickleback

description: Note: Filenames containing "PositiveSelection" actually refer to negative selection experiments, and likewise, filenames containing only "Selection" actually refer to positive selection experiments, due to an initial naming confusion earlier in the project.
DOI: 10.5061/dryad.sg4hb67/1
title: Biochemistry data

description: biochemical data from the experimental evolution experiments
DOI: 10.17632/dvw93g8w83.1
title: Data for: Disruption in an alluvial landscape: settlement and environment dynamics in the alluvium of the river Dyje at the Pohansko archaeological site (Czech Republic)

description: Description of the Pohansko site micromorphological thin-sections
DOI: 10.17632/t6j4yzt2z4.1
title: Data for: Deamands on energy storage for renewable power sources

description: Measuring of sunshine hours in different months.
DOI: 10.17632/wpj24hwhpy.1
title: Data for: Facilely Accessible Quinoline Derivatives as Potent Antibacterial Agents

description: This table shows the MIC values of a few quinoline compounds that are active against Gram-positive bacterial strains including MRSA, MRSE, VRE and C. difficile.
DOI: 10.5061/dryad.04t19/22
title: Boundary Flow - narrowgrid, binaral transversal (double spacing)

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/29
title: Fast Flow - widegrid, binaral transversal (half spacing)

description: contains ("sample_L_0" - "sample_L_9") and ("sample_R_0" - "sample_R_9") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/30
title: Slow Flow - narrowgrid, binaral transversal (double spacing)

description: contains ("sample_L_0" - "sample_L_8") and ("sample_R_0" - "sample_R_8") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/31
title: Slow Flow - narrowgrid, binaral transversal (half spacing)

description: contains ("sample_L_0" - "sample_L_8") and ("sample_R_0" - "sample_R_8") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/32
title: Slow Flow - widegrid, binaral transversal (double spacing)

description: contains ("sample_L_0" - "sample_L_8") and ("sample_R_0" - "sample_R_8") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.04t19/33
title: Slow Flow - widegrid, binaral transversal (half spacing)

description: contains ("sample_L_0" - "sample_L_8") and ("sample_R_0" - "sample_R_8") which correspond to 4 minute epochs at two locations (left and right).
DOI: 10.5061/dryad.29j22tt/10
title: Figure 4D

description: Prism file
DOI: 10.5061/dryad.29j22tt/11
title: Figure S2

description: Prism file
DOI: 10.5061/dryad.29j22tt/12
title: Figure 3C, D and S1

description: Matlab data and script showing the interactions in Figure 3C, D and S1.
DOI: 10.5061/dryad.29j22tt/6
title: Figure 3A

description: Prism file
DOI: 10.5061/dryad.29j22tt/7
title: Figure 4A

description: Prism file
DOI: 10.5061/dryad.29j22tt/8
title: Figure 4B

description: Prism file
DOI: 10.5061/dryad.29j22tt/9
title: Figure 4C

description: Prism file
DOI: 10.5061/dryad.32ht688/1
title: Raw_Data

description: Excel files containing raw data, used to calculate nine single-generation life history traits; developmental time, immature stage survivorship, sex ratio, daily and total fecundity, longevity, lengths of pre-, post-, oviposition periods, as well as 5 fertility life table parameters; the net reproductive rate (R0), intrinsic rate of increase (rm), mean generation time (T), the finite rate of increase (LM) and the doubling time (DT) for 15 isogenic lines of Tetranychus urticae as well as data obtained from the monitoring of the temporal resistance level dynamics, of the T. urticae populations with different starting frequencies of the CHS1 resistant allele
DOI: 10.5061/dryad.3878q/1
title: Steelhead_infections_data

description: This data file includes capture date and location of steelhead trout along the South Fork Eel River. It also includes measurements of their fork length (FL) in mm and weight (Wt) in g. The last column is whether or not the fish was infected by black spot (bs_infection).
DOI: 10.5061/dryad.3878q/2
title: stream_temperature_data

description: Stream temperatures (in Celsius) taken along the South Fork Eel River in summer 2014. Coordinates included. Temperatures were recorded with HOBO temperature loggers.
DOI: 10.5061/dryad.3878q/3
title: snail_count_data

description: Snail host (Planorbella trivolvis) of black spot were surveyed for 15 minutes within a 3m X 2m quadrat on July 14, 2014 at seven sites on the South Fork Eel River. The last column is the average monthly maximum temperature (AMM), in Celsius, centered on the survey date.
DOI: 10.5061/dryad.3878q/4
title: Schaaf et al 2017_analyses

description: R script for temperature summary and statistical analyses presented in the manuscript.
DOI: 10.5061/dryad.5mr8v1v/32
title: PeninsularMalaysia_merged
DOI: 10.5061/dryad.5mr8v1v/33
title: Australia_Pool1_merged
DOI: 10.5061/dryad.5mr8v1v/34
title: Australia_Pool2_merged
DOI: 10.5061/dryad.5mr8v1v/35
title: Australia_Pool3_merged
DOI: 10.5061/dryad.7722q/1
title: Macroynis casieri CT data

description: This zip file contains the CT data for Macroynis casieri NHMUK PV 26904. Includes the .mcs file, which can be opened by the program Mimics, a vol and vgi file which can be opened in programs including the open source program Drishti in addition to segmentation programs like VGStudioMax, Aviso and Mimics, and PLY files for the segmented specimen which can be opened in open source programmes like Meshlab, Blender and others.
DOI: 10.5061/dryad.7722q/2
title: Progempylus edwardsi CT data

description: This zip file contains the CT data for Progempylus edwardsi NHMUK OR 32388. Includes the .mcs file, which can be opened by the program Mimics, a vol and vgi file which can be opened in programs including the open source program Drishti in addition to segmentation programs like VGStudioMax, Aviso and Mimics, and PLY files for the segmented specimen which can be opened in open source programmes like Meshlab, Blender and others.
DOI: 10.5061/dryad.7722q/3
title: Supplementary Information S1 - Scan Parameters Radiography/CT

description: Appendix S1: Scan parameters for radiography and computed tomography for taxa used in this study.
DOI: 10.5061/dryad.7722q/4
title: Supplementary Information S2 – Character List

description: Appendix S2: Trichiuroid character list used in this study.
DOI: 10.5061/dryad.7722q/5
title: Supplementary Information S3 - Morphological Character Matrix

description: Appendix S3: Trichiuroid morphological character matrix used in this study. Character numbers refer to characters outlined in Supplementary Information S2.
DOI: 10.5061/dryad.7722q/6
title: Supplementary Information S5 - Extant only

description: Appendix S5: Maximum clade credibility tree from the Bayesian analysis of the combined morphology and molecular dataset (mitochondrial data from Miya et al. 2013) for extant trichiuroids. Bayesian posterior probabilities are indicated on nodes.
DOI: 10.5061/dryad.7722q/7
title: Supplementary Information S4 - Optimisations Morphology

description: Appendix S4: Trichiuroid optimisations from morphological parsimony analysis. This pdf file is output from MacClade. A key is included.
DOI: 10.5061/dryad.9nq2kc4/1
title: NMR data

description: NMR data can be viewed in Bruker TopSpin Software
DOI: 10.5061/dryad.dg5hv06/2
title: Oakcoding_locus.fasta

description: Locus alignment sequences used to create the SNPs.
DOI: 10.5061/dryad.dg5hv06/3
title: Sequenome_SNP_matrix_1stscreen

description: SEQUENCE output file of the first SNP screening. The file is separated into four sheets detailing i) assay summary ii) sample summary iii) genotypes and iv) genotype area
DOI: 10.5061/dryad.dg5hv06/4
title: Sequenome_SNP_matrix_2ndscreen

description: SEQUENCE output file of the second SNP screening. The file is separated into four sheets detailing i) assay summary ii) sample summary iii) genotypes and iv) genotype area
DOI: 10.5061/dryad.dg5hv06/5
title: Sequenome_SNP_matrix_potentialparents

description: SEQUENCE output file for genotyping potential parent individuals. The file is separated into three sheets detailing i) assay summary ii) sample summary and iii) genotypes
DOI: 10.5061/dryad.fc71cp4/1
title: Analysis scripts and data

description: Includes phylogenetic trees, evolutionary rate estimates, geographic data, and scripts to repeat all analyses from article.
DOI: 10.5061/dryad.fh319v3/1
title: Data used in statistical analysis

description: Data used for statistical analysis.
DOI: 10.5061/dryad.g0v07/1
title: PDVFS_20170801

description: This excel file contained the raw data of our study.
DOI: 10.5061/dryad.g4f4790/1
title: Pitt2018EvolApp

description: The folder includes the SNP array data of 29 cattle samples newly genotyped and the synchronized and filtered 33,342 SNPs dataset analysed in the manuscript.
DOI: 10.5061/dryad.r3707/1
title: Readme

description: Consult this master Readme for information about all files in this Dryad repository.
DOI: 10.5061/dryad.r3707/2
title: BEAST_3Partition_NormalPriors_DivergenceTimeEstimation

description: The XML file provides the full set of parameters used to run a Bayesian analysis of phylogeny and divergence times using the program BEAST 2. Parameters include normally distributed priors on fossil constraints and three data partitions
DOI: 10.5061/dryad.s114355/1
title: Data from: Kohlmeier et al. Age polyethism experiment

description: The datafile contains raw data of the age polyethism experiment in which we manipulated age structure of colonies
DOI: 10.5061/dryad.sk512/4
title: Supporting Movie S4.

description: Same as Movie S3, with original time interval between frame (5 min), zoomed on the front.
DOI: 10.5061/dryad.sk512/5
title: Supporting Movie S5.

description: Same as Movie S3, with original time interval between frame (5 min), zoomed on the middle
DOI: 10.5061/dryad.st7gm24/1
title: Jackson ME archived data
DOI: 10.17632/g5pfy4jjkz.1
title: Data for: some title

description: descr
DOI: 10.5061/dryad.1ch71sd/1
title: Raw data of manuscript RSOS-171438
DOI: 10.5061/dryad.1ch71sd/2
title: probability values for E1 and the control unit
DOI: 10.5061/dryad.20dv6sg/1
title: Collagen IV (Vkg.GFP) primary screening

description: Confocal micrographs (TIFF image files) of Drosophila L3 fat body, corresponding to Fig. S1 in Ke et al., 2018. The compressed folder contains images for the wild type (WT_vkgGFP.tif) and the 88 intracellular retention hits in the primary Collagen IV secretion screening (gene symbol_vkgGFP.tif). Apart from Collagen IV (Vkg.GFP) in green, plasma membrane is shown in red (myr.RFP) and nuclei in blue (DAPI). Images were acquired in a Zeiss LSM780 microscope with a 63x oil immersion objective.
DOI: 10.5061/dryad.20dv6sg/2
title: Perlecan (Trol.YFP) secondary screening

description: Confocal micrographs (TIFF image files) of Drosophila L3 fat body, corresponding to Fig. S2 in Ke et al., 2018.  The compressed folder contains images for the wild type (WT_trolYFP.tif) and the Perlecan secondary screening of the 88 intracellular retention hits in the primary Collagen IV screening (gene symbol_trolYFP.tif). Apart from Perlecan (Trol.YFP) in green, plasma membrane is shown in red (myr.RFP) and nuclei in blue (DAPI). Images were acquired in a Zeiss LSM780 microscope with a 63x oil immersion objective.
DOI: 10.5061/dryad.20dv6sg/3
title: General secretion (secr.GFP) secondary screening

description: Confocal micrographs (TIFF image files) of Drosophila L3 fat body, corresponding to Fig. S3 in Ke et al., 2018.  The compressed folder contains images for the wild type (WT_secrGFP.tif) and the general secretion secondary screening of the 88 intracellular retention hits in the primary Collagen IV screening (gene symbol_secrGFP.tif). Apart from the general secretion marker (secr.GFP) in green, plasma membrane is shown in red (myr.RFP) and nuclei in blue (DAPI). Images were acquired in a Zeiss LSM780 microscope with a 63x oil immersion objective.
DOI: 10.5061/dryad.2b6b43k/1
title: Fasta_Pipelineout_FG_fish_species

description: This repository contains one fasta file per fish species from French Guiana (= 18 fasta files). Each file contains the list of the SNP markers that were generated as output from our custom pipeline for the corresponding species. Each file has been used as a template to build SNP multiplexes for further MassArray genotyping. The molecular resources provided here were developed from samples collected in collaboration with the National Amazonian Park in French Guiana, under the contract R&D_2003_06 and with ethical consideration defined in the convention APA-973-7.
DOI: 10.5061/dryad.2b6b43k/2
title: Fasta_Pipelineout_nonFG_species

description: This repository contains one fasta file per species from the study from Delord et al. 2018, except for fish from French Guiana (= 22 fasta files). Each file contains the list of the SNP markers that were generated as output from our custom pipeline for the corresponding species, and could be used as a template for amplification-based genotyping.
DOI: 10.5061/dryad.365f3/1
title: WCA
DOI: 10.5061/dryad.365f3/2
title: Ag release and XPS
DOI: 10.5061/dryad.365f3/3
title: The growth curve of the microbes
DOI: 10.5061/dryad.365f3/4
title: ALP
DOI: 10.5061/dryad.72r4b86/1
title: ddRAD Sarcohyla bistincta complex

description: ddRAD sequences for the Sarcohyla bistincta species complex: Sarcohyla bistincta, Sarcohyla calthula and Sarcohyla pentheter. The file includes alignments for 10, 25 and 50% missing data.
DOI: 10.5061/dryad.7c652r8/1
title: Frishkoff_2018_Bird_Data

description: Zipped archive raw bird observation data collected in 2016 in Guanacaste peninsula, Costa Rica as well as point count information and species names in separate csv files.
DOI: 10.5061/dryad.n102b1s/1
title: Seawater temperatures East LIS 1976-2015

description: See README for metadata
DOI: 10.5061/dryad.n102b1s/2
title: Catch per unit effort data

description: See README file for metadata
DOI: 10.5061/dryad.n102b1s/3
title: Tagged lobster data

description: See README file for metadata
DOI: 10.5061/dryad.n102b1s/4
title: README

description: Descriptions of data and code associated with this publication.
DOI: 10.5061/dryad.n102b1s/5
title: A1 Millstone temperature trends 1976-2015

description: Exploratory analysis of seawater temperature trends
DOI: 10.5061/dryad.n102b1s/6
title: A2 Average molting, prevalence and CPUE 1999-2015

description: Exploratory analyses of lobster data
DOI: 10.5061/dryad.n102b1s/7
title: A3 H1 Spring molting phenology is altered by temperature

description: Test of hypothesis 1
DOI: 10.5061/dryad.n102b1s/8
title: A4 H2 Spring molting reduces risk of ESD

description: Test of hypothesis 2
DOI: 10.5061/dryad.r3707/10
title: Additional_SampleLabelTranslations

description: Data files provided at Dryad were the untouched data files used for analyses. In some cases, the taxon labels in the files do not match the taxon labels in figures in the manuscript. This file provides the translations between the taxon labels in the data files and the taxon labels in the manuscript.
DOI: 10.5061/dryad.r3707/3
title: BEAST_5Partition_ExpPriors_DivergenceTimeEstimation

description: The XML file provides the full set of parameters used to run a Bayesian analysis of phylogeny and divergence times using the program BEAST 2. This file contains exponentially distributed minimum age priors on fossil age constraints and data in 5 partitions from PartitionFinder 2.
DOI: 10.5061/dryad.r3707/4
title: RAxML_CyphostemmaAndOutgroup_MLPhylogeny.phy

description: This text file provides data partitions for the RAxML analysis.
DOI: 10.5061/dryad.r3707/5
title: RAxML_CyphostemmaAndOutgroup_Partitions

description: This text file provides data partitions for the RAxML analysis.
DOI: 10.5061/dryad.r3707/6
title: Mesquite_CyphostemmaMorphology_AncestralCharacterStateReconstructions.nex

description: This NEXUS file has a single tree (MCCT) and categorical data for the species of Cyphostemma used to reconstruct ancestral character states. The evolutionary history of the character states for the 'stem' and 'tendril' characters were reconstructed using parsimony and maximum likelihood by Mesquite.
DOI: 10.5061/dryad.r3707/7
title: MrBayes_CyphostemmaAndOutgroup_BayesianPhylogeny.nex

description: The NEXUS file provides the data alignment and the Mr Bayes block to run the analysis. Additional information concerning the locus positions in the alignment are provided by the comments in the file.
DOI: 10.5061/dryad.r3707/8
title: Lagrange_Cyphostemma_DEC_noConstraints

description: This file is a Python script that is run using Python to carry out a DEC analysis based on the data contained in the provided script. This script was generated by the online Lagrange configurator(http://www.reelab.net/lagrange/configurator/index). This script enforces no constraints on the ancestral provinces and no constraints on the paths of dispersal between provinces.
DOI: 10.5061/dryad.r3707/9
title: Lagrange_Cyphostemma_DEC_wConstraints

description: This file is a Python script that is run using Python to carry out a DEC analysis based on the data contained in the provided script. This script was generated by the online Lagrange configurator(http://www.reelab.net/lagrange/configurator/index). This script enforces constraints on the paths of dispersal between provinces.
DOI: 10.5061/dryad.s114355/2
title: Longterm knock down raw data

description: This datafile contains the raw data of the behavioral observations after a longterm knockdown of Vg-like A.
DOI: 10.5061/dryad.s114355/3
title: Preference test raw data

description: Raw data of the experiment in which the responsiveness of young and old workers to brood and adult worker CHC's was tested.
DOI: 10.5061/dryad.s114355/4
title: Shortterm knock down raw  data

description: This data file contains the raw data of the behavioral observations after a shortterm knockdown of Vg-like A
DOI: 10.5061/dryad.s114355/5
title: Light dark test

description: Raw data of the light/dark test
DOI: 10.5061/dryad.s114355/6
title: Broodcare test raw data

description: This data file contains the raw data of the individualized brood  care test to disentangle the effects of worker and larva treatment
DOI: 10.5061/dryad.s114355/7
title: Ovary measurements

description: This data file contains the ovary measurements of queens and brood carers
DOI: 10.5061/dryad.s114355/8
title: qPCR raw data

description: This data file contain all qPCR raw data
DOI: 10.5061/dryad.s114355/9
title: Alignment

description: Alignment of all Vg and Vg-like sequences used to contruct phylogenetic tree
DOI: 10.5061/dryad.sk512/10
title: ck666_data

description: ck666_data is a folder where velocity data are stored in the CK666 drug case.
DOI: 10.5061/dryad.sk512/11
title: kymographs_CK666

description: kymographs_CK666 is a folder where velocity kymographs are stored in the CK666 drug case.
DOI: 10.5061/dryad.sk512/12
title: calculPhase

description: Wavelet code
DOI: 10.5061/dryad.sk512/13
title: Supporting Movie S1.

description: Monolayer of MDCK cells migrating within a straight strip with mitomycin C to prevent divisions. Phase contrast image showing cell contours. Strip total length 4 mm, width 1 mm. The first image, noted t = 0, is taken after around 5 h of migration. Duration of the movie: 26 h. Because of file size constraints, the movie resolution has been decreased, and the time interval between frame has been doubled (10 min instead of 5 min in the original).