cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.1297343.v1
title: Format release years

description: This dataset contains release years for formats (release_years_formats.csv), format versions (release_years_format_versions.csv) and software (release_years_software.csv). This dataset is used as an input data for the Format Analysis workflow (https://github.com/datascience/FormatAnalysis)
DOI: 10.6084/m9.figshare.1297321
title: File group profile dataset

description: This dataset contains file group profiles for specific combinations of file formats and their properties. Combinations are defined by the Analysis Groups dataset (X). Currently three different sets are available. PDF_filtered covers PDF file format versions. Years covered are 1996-2010. HTML_filtered coveres HTML and XHTML file format versions. Years covered are 1996-2010. Distiller_filtered coveres 9 major releases of Adobe Distiller. Years covered are 1996-2010. This dataset is an intermediary result of the analysis workflow (https://github.com/datascience/FormatAnalysis). It is created by filtering and conflict reduction of the Format profile dataset from the UK web archive (DOI: 10.5259/ukwa.ds.2/fmt/1). First 2 columns cover combinations of property value pairs for different properties (mime type and software for Distiller_filtered and mie type and version for HTML_filtered and PDF_filtered). Last two columns cover year and amount of files with defined combination of properties that were available in a given dataset (UK web archive format profile) at specific year.
DOI: 10.6084/m9.figshare.1297346.v1
title: U/Pb dating of detrital zircons from late Palaeozoic deposits of Bel’kovsky Island (New Siberian Islands): critical testing of Arctic tectonic models

description: Detrital zircon U/Pb ages provide new insights into the provenance of Upper Devonian–Permian clastic rocks of Bel’kovsky Island, within the New Siberian Islands archipelago. Based on these new data, we demonstrate that Upper Devonian–Carboniferous turbidites of Bel’kovsky Island were derived from Grenvillian, Sveconorwegian, and Timanian sources similar to those that fed Devonian–Carboniferous deposits of the Severnaya Zemlya archipelago and Wrangel Island and were probably located within Laurentia–Baltica. Detrital zircon ages from the lower Permian deposits of Bel’kovsky Island suggest a drastic change in provenance and show a strong affinity with the Uralian Orogen. Two possible models to interpret this shift in provenance are proposed. The first involves movement of these continental blocks from the continental margin of Laurentia–Baltica towards the Uralian Orogen during the late Carboniferous to Permian, while the second argues for long sediment transport across the Barents shelf.
DOI: 10.6084/m9.figshare.1297304
title: Data set for : Emerging ecosystems change the spatial distribution of top carnivores even in poorly populated areas

description: --
DOI: 10.6084/m9.figshare.1297304.v1
title: Data set for : Emerging ecosystems change the spatial distribution of top carnivores even in poorly populated areas

description: --
DOI: 10.6084/m9.figshare.1297309.v1
title: microRNAs in Arabidopsis : discovery, functions & implication in the control of flowering time.

description: Discovered about 20 years ago, microRNA are small non-coding RNA (21-23 nt) involved in the post-transcriptional regulation of gene expression. They are involved in numerous regulatory pathways. However, the analysis of their function and their expression level is a bit tricky, explaining that they were only integrated in the molecular pathways during the last decade. Here, we present a brief summary of the events that lead to the discovery of microRNAs, as well as the molecular tools used for their analysis and their role in the molecular control of flowering time. Of course, feel free to leave any constructive comment about those slides !
DOI: 10.6084/m9.figshare.1297299
title: Linear and exponential line landscapes

description: Simulated chemotaxis trajectories of model larvae in environments with a ramp of odour intensity fromed from multiple point sources
DOI: 10.6084/m9.figshare.1297293
title: Data collected during the experiment described in the article titled: "Intrinsic motivations drive learning of eye movements: An experiment with human adults"

description: S_Dataset contains the data collected during the experiment described in the paper titled: "Intrinsic motivations drive learning of eye movements: An experiment with human adults" Authors: Daniele Caligiore, Magda Mustile, Daniele Cipriani, Peter Redgrave, Jochen Triesch, Maria De Marsico, Gianluca Baldassarre
DOI: 10.6084/m9.figshare.1297291
title: DataLogger Micro datasheet

description: The datasheet describes the DataLogger Micro v. 1.0. This is an open source, cost-efficient, small, hydrological data logging unit. Schematic and board layout are included.
DOI: 10.6084/m9.figshare.1297292
title: University of Leicester APCs 2014

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Leicester during 2014. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Leicester Library.
DOI: 10.6084/m9.figshare.1297292.v1
title: University of Leicester APCs 2014

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Leicester during 2014. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Leicester Library.
DOI: 10.6084/m9.figshare.1297293.v2
title: Data collected during the experiment described in the article titled: "Intrinsic motivations drive learning of eye movements: An experiment with human adults"

description: S_Dataset contains the data collected during the experiment described in the paper titled: "Intrinsic motivations drive learning of eye movements: An experiment with human adults" Authors: Daniele Caligiore, Magda Mustile, Daniele Cipriani, Peter Redgrave, Jochen Triesch, Maria De Marsico, Gianluca Baldassarre
DOI: 10.6084/m9.figshare.1297285
title: Analysing the assemblage dispersion field

description: This archive contains the data and R scripts used for the following study: Buschke, F.T., Brendonck, L. & Vanschoenwinkel (2015). Simple mechanistic models can partially explain local but not range-wide co-occurrence of African mammals. Global Ecology and Biogeography doi: 10.1111/geb.12316 Please be sure to read the README.txt file first, before attempting to use these data. A written description of the research methodology can be obtained from the manuscript. Any comments or inquiries can be directed to the lead author, Falko Buschke (falko.buschke@gmail.com)
DOI: 10.6084/m9.figshare.1297293.v1
title: S_Dataset

description: S_Dataset contains the data collected during the experiment described in the paper titled: "Intrinsic motivations drive learning of eye movements: An experiment with human adults" Authors: Daniele Caligiore, Magda Mustile, Daniele Cipriani, Peter Redgrave, Jochen Triesch, Maria De Marsico, Gianluca Baldassarre
DOI: 10.6084/m9.figshare.1297291.v2
title: DataLogger Micro datasheet

description: The datasheet describes the DataLogger Micro v. 1.0. This is an open source, cost-efficient, small, hydrological data logging unit. Schematic and board layout are included.
DOI: 10.6084/m9.figshare.1297137
title: University of Portsmouth APCs 2014

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Portsmouth during 2014. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Portsmouth Library.
DOI: 10.6084/m9.figshare.1297161
title: Network complexity data

description: Data files complexity of network data.
DOI: 10.6084/m9.figshare.1297285.v1
title: Analysing the assemblage dispersion field

description: This archive contains the data and R scripts used for the following study: Buschke, F.T., Brendonck, L. & Vanschoenwinkel (2015). Simple mechanistic models can partially explain local but not range-wide co-occurrence of African mammals. Global Ecology and Biogeography doi: 10.1111/geb.12316 Please be sure to read the README.txt file first, before attempting to use these data. A written description of the research methodology can be obtained from the manuscript. Any comments or inquiries can be directed to the lead author, Falko Buschke (falko.buschke@gmail.com)
DOI: 10.6084/m9.figshare.1297137.v1
title: University of Portsmouth APCs 2014

description: This spreadsheet contains details of article processing charges (APCs) paid by the University of Portsmouth during 2014. The data is being collected as part of Jisc's APC data collection project to address the Total Cost of Ownership of scholarly communication (https://www.jisc-collections.ac.uk/Jisc-Monitor/APC-data-collection/) and has been released with permission of the University of Portsmouth Library.
DOI: 10.6084/m9.figshare.1297064
title: Examination of data claiming Drosophila C virus is beneficial do not support this claim

description: Drosophila C Virus (DCV) is often claimed to be a beneficial virus based on some of the older literature (see references below). However, this data does not actually show that DCV increases host fitness. To establish any effects on host fitness related traits data were collected from two papers in which DCV is reported to enhance two fitness related traits, taking the mean values for each line/population studied and looking at the overall effect of DCV on ovariole number and development time. Data was collected from: Gomariz-Zilber, E. and Thomas-Orillard, M. (1993), Drosophila C virus and Drosophila hosts: a good association in various environments. Journal of Evolutionary Biology, 6: 677–689. dx.doi.org/10.1046/j.1420-9101.1993.6050677.x Thomas-Orillard M. Modifications of Mean Ovariole Number, Fresh Weight of Adult Females and Developmental Time in DROSOPHILA MELANOGASTER Induced by Drosophila C Virus. Genetics 1984;107(4):635-644. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1202381/pdf/635.pdf The xls file contains data taken from these two papers and plots of these data. There appears to be no overall effect of DCV on development time. There is a small effect on ovariole number (note lifetime fecundity was not measured) with an increase of ~2 ovarioles in infected flies. Note oviariole number can increase in starved flies (dx.doi.org/10.1186/1471-2148-6-57) so this may be due to infection induced anorexia; DCV is known to trigger a nutritional stress response due to intestinal obstruction (dx.doi.org/10.1128/JVI.02320-14). Even if this does relate to an increase in fecundity, it is likely a life history shift (parasite induced fecundity compensation dx.doi.org/10.1098/rspb.2004.2959), and would equate to ~2-4 extra eggs a day which is unlikely to compensate for the lifespan of the flies being vastly reduced due to being killed by DCV in only a few days.
DOI: 10.6084/m9.figshare.1297064.v1
title: Examination of data claiming Drosophila C virus is beneficial do not support this claim

description: Drosophila C Virus (DCV) is often claimed to be a beneficial virus based on some of the older literature (see references below). However, this data does not actually show that DCV increases host fitness. To establish any effects on host fitness related traits data were collected from two papers in which DCV is reported to enhance two fitness related traits, taking the mean values for each line/population studied and looking at the overall effect of DCV on ovariole number and development time. Data was collected from: Gomariz-Zilber, E. and Thomas-Orillard, M. (1993), Drosophila C virus and Drosophila hosts: a good association in various environments. Journal of Evolutionary Biology, 6: 677–689. dx.doi.org/10.1046/j.1420-9101.1993.6050677.x Thomas-Orillard M. Modifications of Mean Ovariole Number, Fresh Weight of Adult Females and Developmental Time in DROSOPHILA MELANOGASTER Induced by Drosophila C Virus. Genetics 1984;107(4):635-644. http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1202381/pdf/635.pdf The xls file contains data taken from these two papers and plots of these data. There appears to be no overall effect of DCV on development time. There is a small effect on ovariole number (note lifetime fecundity was not measured) with an increase of ~2 ovarioles in infected flies. Note oviariole number can increase in starved flies (dx.doi.org/10.1186/1471-2148-6-57) so this may be due to infection induced anorexia; DCV is known to trigger a nutritional stress response due to intestinal obstruction (dx.doi.org/10.1128/JVI.02320-14). Even if this does relate to an increase in fecundity, it is likely a life history shift (parasite induced fecundity compensation dx.doi.org/10.1098/rspb.2004.2959), and would equate to ~2-4 extra eggs a day which is unlikely to compensate for the lifespan of the flies being vastly reduced due to being killed by DCV in only a few days.
DOI: 10.6084/m9.figshare.1296326
title: QI Quantum Imagination Theory

description: QI Quantum Imagination Theory v0. Citations needed. Submitting to Cornell. Note I have not included one critial piece of this equation
DOI: 10.6084/m9.figshare.1296299
title: Spatio-temporal analysis of the accuracy of Tropical Multisatellite Precipitation Analysis 3B42 precipitation data in mid-high latitudes of China

description: The main objective of our study is to assess the accuracy of TMPA 3B42 V7 (hereinafter referred to as TMPA V7) data over the mid-high latitude region of China. This region is situated beyond the nominal coverage (38 NS) of the TRMM Microwave Imager (TMI) and Precipitation Radar (PR). Obviously, large bias and error would exist over this region. We provide a systematic evaluation of TMPA V7 in terms of precipitation amounts and occurrency of precipitation events.
DOI: 10.6084/m9.figshare.1296312
title: Admission dates

description: dates assorted
DOI: 10.6084/m9.figshare.1296323
title: Blood pressure

description: Test data set to be linked to an iPython notebook I am working on
DOI: 10.6084/m9.figshare.1296299.v1
title: Spatio-temporal analysis of the accuracy of Tropical Multisatellite Precipitation Analysis 3B42 precipitation data in mid-high latitudes of China

description: The main objective of our study is to assess the accuracy of TMPA 3B42 V7 (hereinafter referred to as TMPA V7) data over the mid-high latitude region of China. This region is situated beyond the nominal coverage (38 NS) of the TRMM Microwave Imager (TMI) and Precipitation Radar (PR). Obviously, large bias and error would exist over this region. We provide a systematic evaluation of TMPA V7 in terms of precipitation amounts and occurrency of precipitation events.
DOI: 10.6084/m9.figshare.1296312.v2
title: Admission dates

description: dates assorted
DOI: 10.6084/m9.figshare.1296312.v1
title: dataset1

description: dates assorted
DOI: 10.6084/m9.figshare.1296299.v2
title: Spatio-temporal analysis of the accuracy of Tropical Multisatellite Precipitation Analysis 3B42 precipitation data in mid-high latitudes of China

description: The main objective of our study is to assess the accuracy of TMPA 3B42 V7 (hereinafter referred to as TMPA V7) data over the mid-high latitude region of China. This region is situated beyond the nominal coverage (38 NS) of the TRMM Microwave Imager (TMI) and Precipitation Radar (PR). Obviously, large bias and error would exist over this region. We provide a systematic evaluation of TMPA V7 in terms of precipitation amounts and occurrency of precipitation events.
DOI: 10.6084/m9.figshare.1296278.v1
title: A novel cytostatic form of autophagy in sensitization of non-small cell lung cancer cells to radiation by vitamin D and the vitamin D analog, EB 1089

description: The standard of care for unresectable lung cancer is chemoradiation. However, therapeutic options are limited and patients are rarely cured. We have previously shown that vitamin D and vitamin D analogs such as EB 1089 can enhance the response to radiation in breast cancer through the promotion of a cytotoxic form of autophagy. In A549 and H460 non-small cell lung cancer (NSCLC) cells, 1,25-D<sub>3</sub> (the hormonally active form of vitamin D) and EB 1089 prolonged the growth arrest induced by radiation alone and suppressed proliferative recovery, which translated to a significant reduction in clonogenic survival. In H838 or H358 NSCLC cells, which lack VDR/vitamin D receptor or functional TP53, respectively, 1,25-D<sub>3</sub> failed to modify the extent of radiation-induced growth arrest or suppress proliferative recovery post-irradiation. Sensitization to radiation in H1299 NSCLC cells was evident only when TP53 was induced in otherwise <i>tp53</i>-null H1299 NSCLC cells. Sensitization was not associated with increased DNA damage, decreased DNA repair or an increase in apoptosis, necrosis, or senescence. Instead sensitization appeared to be a consequence of the conversion of the cytoprotective autophagy induced by radiation alone to a novel cytostatic form of autophagy by the combination of 1,25-D<sub>3</sub> or EB 1089 with radiation. While both pharmacological and genetic suppression of autophagy or inhibition of AMPK phosphorylation sensitized the NSCLC cells to radiation alone, inhibition of the cytostatic autophagy induced by the combination treatment reversed sensitization. Evidence for selectivity was provided by lack of radiosensitization in normal human bronchial cells and cardiomyocytes. Taken together, these studies have identified a unique cytostatic function of autophagy that appears to be mediated by VDR, TP53, and possibly AMPK in the promotion of an enhanced response to radiation by 1,25-D<sub>3</sub> and EB 1089 in NSCLC.
DOI: 10.6084/m9.figshare.1296278
title: A novel cytostatic form of autophagy in sensitization of non-small cell lung cancer cells to radiation by vitamin D and the vitamin D analog, EB 1089

description: The standard of care for unresectable lung cancer is chemoradiation. However, therapeutic options are limited and patients are rarely cured. We have previously shown that vitamin D and vitamin D analogs such as EB 1089 can enhance the response to radiation in breast cancer through the promotion of a cytotoxic form of autophagy. In A549 and H460 non-small cell lung cancer (NSCLC) cells, 1,25-D<sub>3</sub> (the hormonally active form of vitamin D) and EB 1089 prolonged the growth arrest induced by radiation alone and suppressed proliferative recovery, which translated to a significant reduction in clonogenic survival. In H838 or H358 NSCLC cells, which lack VDR/vitamin D receptor or functional TP53, respectively, 1,25-D<sub>3</sub> failed to modify the extent of radiation-induced growth arrest or suppress proliferative recovery post-irradiation. Sensitization to radiation in H1299 NSCLC cells was evident only when TP53 was induced in otherwise <i>tp53</i>-null H1299 NSCLC cells. Sensitization was not associated with increased DNA damage, decreased DNA repair or an increase in apoptosis, necrosis, or senescence. Instead sensitization appeared to be a consequence of the conversion of the cytoprotective autophagy induced by radiation alone to a novel cytostatic form of autophagy by the combination of 1,25-D<sub>3</sub> or EB 1089 with radiation. While both pharmacological and genetic suppression of autophagy or inhibition of AMPK phosphorylation sensitized the NSCLC cells to radiation alone, inhibition of the cytostatic autophagy induced by the combination treatment reversed sensitization. Evidence for selectivity was provided by lack of radiosensitization in normal human bronchial cells and cardiomyocytes. Taken together, these studies have identified a unique cytostatic function of autophagy that appears to be mediated by VDR, TP53, and possibly AMPK in the promotion of an enhanced response to radiation by 1,25-D<sub>3</sub> and EB 1089 in NSCLC.
DOI: 10.6084/m9.figshare.1296278.v3
title: A novel cytostatic form of autophagy in sensitization of non-small cell lung cancer cells to radiation by vitamin D and the vitamin D analog, EB 1089

description: The standard of care for unresectable lung cancer is chemoradiation. However, therapeutic options are limited and patients are rarely cured. We have previously shown that vitamin D and vitamin D analogs such as EB 1089 can enhance the response to radiation in breast cancer through the promotion of a cytotoxic form of autophagy. In A549 and H460 non-small cell lung cancer (NSCLC) cells, 1,25-D<sub>3</sub> (the hormonally active form of vitamin D) and EB 1089 prolonged the growth arrest induced by radiation alone and suppressed proliferative recovery, which translated to a significant reduction in clonogenic survival. In H838 or H358 NSCLC cells, which lack VDR/vitamin D receptor or functional TP53, respectively, 1,25-D<sub>3</sub> failed to modify the extent of radiation-induced growth arrest or suppress proliferative recovery post-irradiation. Sensitization to radiation in H1299 NSCLC cells was evident only when TP53 was induced in otherwise <i>tp53</i>-null H1299 NSCLC cells. Sensitization was not associated with increased DNA damage, decreased DNA repair or an increase in apoptosis, necrosis, or senescence. Instead sensitization appeared to be a consequence of the conversion of the cytoprotective autophagy induced by radiation alone to a novel cytostatic form of autophagy by the combination of 1,25-D<sub>3</sub> or EB 1089 with radiation. While both pharmacological and genetic suppression of autophagy or inhibition of AMPK phosphorylation sensitized the NSCLC cells to radiation alone, inhibition of the cytostatic autophagy induced by the combination treatment reversed sensitization. Evidence for selectivity was provided by lack of radiosensitization in normal human bronchial cells and cardiomyocytes. Taken together, these studies have identified a unique cytostatic function of autophagy that appears to be mediated by VDR, TP53, and possibly AMPK in the promotion of an enhanced response to radiation by 1,25-D<sub>3</sub> and EB 1089 in NSCLC.
DOI: 10.6084/m9.figshare.1296276
title: Ubiquitination and proteasomal degradation of ATG12 regulates its proapoptotic activity

description: During macroautophagy, conjugation of ATG12 to ATG5 is essential for LC3 lipidation and autophagosome formation. Additionally, ATG12 has ATG5-independent functions in diverse processes including mitochondrial fusion and mitochondrial-dependent apoptosis. In this study, we investigated the regulation of free ATG12. In stark contrast to the stable ATG12–ATG5 conjugate, we find that free ATG12 is highly unstable and rapidly degraded in a proteasome-dependent manner. Surprisingly, ATG12, itself a ubiquitin-like protein, is directly ubiquitinated and this promotes its proteasomal degradation. As a functional consequence of its turnover, accumulation of free ATG12 contributes to proteasome inhibitor-mediated apoptosis, a finding that may be clinically important given the use of proteasome inhibitors as anticancer agents. Collectively, our results reveal a novel interconnection between autophagy, proteasome activity, and cell death mediated by the ubiquitin-like properties of ATG12.