cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7958034
title: Trends in gender homophily in scientific publications (data)

description: This dataset contains records of research articles extracted from the Web of Science (WoS) from 1980 to 2019---in total, 15,642 journals, 28,241,100 articles and 111,980,858 authorships across 153 research areas.


The main dataset (author_address_article_gend_v2.parquet), in Parquet format, contains all the authorships, where an authorship is defined as the tuple article-author. There are 12 variables per authorship (row):



	
ut: unique article identifier.
	
daisng_id: unique author identifier.
	
country: author country (two-letter ISO code).
	
date: publication date.
	
gender: gender of the author ("male" or "female"), as provided by the Genderize.io API.
	
probability: probability of the gender attribute, as provided by the Genderize.io API.
	
count: number of entries for the author first name, as provided by the Genderize.io API.
	
jsc: journal subject category.
	
field: field of research.
	
research_area: area of research.
	
n_aut: number of authors in this publication.
	
journal: journal name.



With the previous dataset, a resampler was applied to generate null homophily values for each year. There are 4 datasets in R Data Serialization (RDS) format:



	
null_field.rds: null homophily values per country, year and field of research.
	
null_field_comp.rds: null homophily values per year and field of research (only for complete authorships).
	
null_research.rds: null homophily values per year and area of research.
	
null_research_comp.rds: null homophily values per year and area of research (only for complete authorships).



All these datasets have the same structure:



	
country: country (two-letter ISO code).
	
year: year.
	
variable: either field or research area name.
	
m: average homophily.
	
s: homophily std. error.



Finally, some supplementary files used in the descriptive analysis and methods:



	
File null_research_l2019.rds is an example of the output from the resampling algorithm for year 2019.
	
File wos_category_to_field.csv is a mapping from WoS categories to more general fields.
	
File jcr_if_2020.csv contains the percentiles of the journal impact factor for the JCR 2020.
description: This submission is anonimized for double-blind peer review, and will be published in open access upon acceptance.
DOI: 10.6084/m9.figshare.22829088
title: Rational design of B-cell and T-cell multi epitope-based vaccine against Zika virus, an <i>in silico</i> study

description: The Zika virus (ZKV) is a single-stranded positive-sense, enveloped RNA virus. Zika infection during pregnancy can cause congenital microcephaly, Guillain-Barré syndrome, miscarriage, and other CNS abnormalities. The world needs safe and effective vaccinations to fight against ZIKV infection since vaccination is generally regarded as one of the most effective ways to prevent infectious diseases. In the present work, we used immunoinformatics and docking studies to construct a vaccine containing multi-epitopes using the structural and non-structural proteins of ZKV. The structural models of ZKV proteins (PrE, PrM, NS1, and NS2A) were constructed using Pyre2 and RaptorX servers. The epitopes of B-cell, T-cell (HTL and CTL), and IFN-γ were predicted, and each epitope’s immunogenic nature and physiochemical properties were confirmed. As an adjuvant, the CPG-Oligodeoxynucleotide, an agonist of Toll-like receptor 9 (TLR9), is associated to cytotoxic T-lymphocytes (CTL) epitopes <i>via</i> PAPAP linker. To assess the binding affinity and the tendency of the designed vaccine to induce an immune response through TLR9, molecular docking was done. In the next step, molecular dynamics (MD) simulation to 100 nanoseconds (ns) was used to evaluate the stability of the interaction of the designed vaccine with TLR9. The designed vaccine is predicted to be highly antigenic, non-toxic, soluble, and stable with low flexibility in MD simulation. MD studies indicated that the finalized vaccine-TLR9 docked complex was stable during simulation time. The vaccine construct is able to stimulate both humoral and cellular immune responses. We suppose that our constructed model of the vaccine may have the ability to induce the host immune response against ZKV. Further studies, including <i>in vitro</i> and <i>in vivo</i> experimental analyses, are needed to prove the constructed vaccine’s efficacy with multi-epitopes. Communicated by Ramaswamy H. Sarma
DOI: 10.6084/m9.figshare.22829088.v1
title: Rational design of B-cell and T-cell multi epitope-based vaccine against Zika virus, an <i>in silico</i> study

description: The Zika virus (ZKV) is a single-stranded positive-sense, enveloped RNA virus. Zika infection during pregnancy can cause congenital microcephaly, Guillain-Barré syndrome, miscarriage, and other CNS abnormalities. The world needs safe and effective vaccinations to fight against ZIKV infection since vaccination is generally regarded as one of the most effective ways to prevent infectious diseases. In the present work, we used immunoinformatics and docking studies to construct a vaccine containing multi-epitopes using the structural and non-structural proteins of ZKV. The structural models of ZKV proteins (PrE, PrM, NS1, and NS2A) were constructed using Pyre2 and RaptorX servers. The epitopes of B-cell, T-cell (HTL and CTL), and IFN-γ were predicted, and each epitope’s immunogenic nature and physiochemical properties were confirmed. As an adjuvant, the CPG-Oligodeoxynucleotide, an agonist of Toll-like receptor 9 (TLR9), is associated to cytotoxic T-lymphocytes (CTL) epitopes <i>via</i> PAPAP linker. To assess the binding affinity and the tendency of the designed vaccine to induce an immune response through TLR9, molecular docking was done. In the next step, molecular dynamics (MD) simulation to 100 nanoseconds (ns) was used to evaluate the stability of the interaction of the designed vaccine with TLR9. The designed vaccine is predicted to be highly antigenic, non-toxic, soluble, and stable with low flexibility in MD simulation. MD studies indicated that the finalized vaccine-TLR9 docked complex was stable during simulation time. The vaccine construct is able to stimulate both humoral and cellular immune responses. We suppose that our constructed model of the vaccine may have the ability to induce the host immune response against ZKV. Further studies, including <i>in vitro</i> and <i>in vivo</i> experimental analyses, are needed to prove the constructed vaccine’s efficacy with multi-epitopes. Communicated by Ramaswamy H. Sarma
DOI: 10.15468/dl.za8hkk
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lasiocroton harrisii Britton"
 ]
}

 The dataset includes 10 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168955-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xv0gst
title: Occurrence Download

description: A dataset containing 1020 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Metapenaeus endeavouri (Schmitt, 1926)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1020 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033000-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.khxzp6
title: Occurrence Download

description: A dataset containing 108581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Geometry POLYGON((-83.320312 45.213003,-83.320312 31.877557,-63.369140 31.877557,-63.369140 45.213003,-83.320312 45.213003))",
 "HasGeospatialIssue is true",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 108581 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002696-150221044754056/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pcxmb7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepanthes glaberrima Luer & R.Vásquez"
 ]
}

 The dataset includes 4 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168957-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ppcko7
title: Occurrence Download

description: A dataset containing 11260 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Necora puber (Linnaeus, 1767), 1991",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 11260 records from 45 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033002-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.em3ah8
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus mianningensis Hu"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009663-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fewcrh
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia supermexicana Matuda"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002696-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2b8m9g
title: Occurrence Download

description: A dataset containing 2478 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Philonotis calcarea (Bruch & Schimp.) Schimp.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 2478 records from 87 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001657-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.oqsdqo
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hanguana Blume",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Unknown evidence"
 ]
 }
 ]
}

 The dataset includes 122 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033003-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qcpmbm
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "TaxonKey is Acestrorhynchus abbreviatus (Cope, 1878)"
 ]
}

 The dataset includes 12 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059992-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5hu7xh
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alsophila apiculata Rosenst."
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001675-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qwzfkp
title: Occurrence Download

description: A dataset containing 271 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ostrea chilensis Küster, 1844",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 271 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033005-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckgeu4
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Microplankton abundance at bottle station SEPT-1999-K5"
 ]
}

 The dataset includes 12 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002696-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2dp4rd
title: Occurrence Download

description: A dataset containing 216 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Dendroaspis polylepis Günther, 1864",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 216 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033006-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7swv4
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "Year is 2023",
 "GadmGid is one of (COL)",
 "TaxonKey is one of (Pedaliodes Butler, 1867)"
 ]
 }
 ]
}

 The dataset includes 56 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009634-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j5ttcm
title: Occurrence Download

description: A dataset containing 517 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arctocephalus australis (Zimmermann, 1783)"
 ]
}

 The dataset includes 517 records from 35 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002696-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5uww87
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Justicia hygrobia Leonard"
 ]
}

 The dataset includes 9 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168956-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xj9tqc
title: Occurrence Download

description: A dataset containing 150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mantella baroni Boulenger, 1888",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 150 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033008-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.txu65f
title: Occurrence Download

description: A dataset containing 492 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Astronium lecointei Ducke"
 ]
}

 The dataset includes 492 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001655-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uns5jb
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia takizawae Ehlers & H.Luther"
 ]
}

 The dataset includes 15 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002697-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmzjpc
title: Occurrence Download

description: A dataset containing 393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gyrostemon Desf.",
 "HasCoordinate is true",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Unknown evidence"
 ]
 }
 ]
}

 The dataset includes 393 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033011-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n3v55j
title: Occurrence Download

description: A dataset containing 450 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Anolis barkeri (Schmidt, 1939)"
 ]
}

 The dataset includes 450 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009631-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k0go4a
title: Occurrence Download

description: A dataset containing 824 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Melanoplus mexicanus (Saussure, 1861)"
 ]
}

 The dataset includes 824 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002698-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ms6a8s
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gaeumannomyces graminis var. avenae (E.M.Turner) Dennis"
 ]
}

 The dataset's 1 records were derived from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0168935-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.saxcz9
title: Occurrence Download

description: A dataset containing 130 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lycaon pictus (Temminck, 1820)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-13.359375 33.724339,-13.359375 -38.822590,52.03125 -38.822590,52.03125 33.724339,-13.359375 33.724339))",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Machine Observation",
 "BasisOfRecord is Observation",
 "BasisOfRecord is Living Specimen",
 "BasisOfRecord is Specimen"
 ]
 }
 ]
}

 The dataset includes 130 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033014-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.by8frt
title: Occurrence Download

description: A dataset containing 50 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Liparis inaperta Finet"
 ]
}

 The dataset includes 50 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009607-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rjfnlm
title: Occurrence Download

description: A dataset containing 3757 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vultur gryphus Linnaeus, 1758",
 "Year 2000-2015"
 ]
}

 The dataset includes 3757 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002698-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hy4unx
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lithocarpus chifui Chun & Tsiang"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009632-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpfyjl
title: Occurrence Download

description: A dataset containing 1447 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phengaris arion (Linnaeus, 1758)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1447 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033015-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o1x3mt
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammopiptanthus mongolicus (Maxim. ex Kom.) S.H.Cheng"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002699-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3v8vmr
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Arabis laxa Sm.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009614-240216155721649/datasets/export for details.
DOI: 10.15468/dl.kgmxhm
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pan paniscus Schwarz, 1929",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033016-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.