cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.27737655
title: Cryo-EM of VCP-VCPIP1 and VCP-VCPIP1-p47 complexes

description: Cryo-EM structure of p47 bound to VCP N-domain (with D1 domain)
DOI: 10.6084/m9.figshare.27737655.v1
title: Cryo-EM of VCP-VCPIP1 and VCP-VCPIP1-p47 complexes

description: Cryo-EM structure of p47 bound to VCP N-domain (with D1 domain)
DOI: 10.15468/dl.wzn4p3
title: Occurrence Download

description: A dataset containing 138 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes nigrum",
 "Country is Italy",
 "HasCoordinate is true"
 ]
}

 The dataset includes 138 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002963-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28930319
title: A Simulated Comprehensive Photon Fluence Shielding Spectra Dataset for Advanced Radiation Safety Assessment

description: Nuclear energy plays a pivotal role in global energy production, especially as a sustainable and green energy source. However, nuclear reactions produce byproducts such as spent fuel and radioactive waste, which emit gamma radiation and pose significant risks to human health and safety. Accurate radiation hazard assessments are therefore essential throughout the design and maintenance phases of nuclear facilities, relying heavily on simulations informed by experimental and evaluated nuclear data. Among various computational methods, the Point Kernel method is widely adopted in engineering practice due to its high computational efficiency. A key element of this method is the use of pre-defined coefficients known as buildup factors, which critically impact simulation accuracy. However, the most used dataset—published in the ANSI reports—is outdated in both format and scope, lacking sufficient data to support reliable simulations and hindering further research. To address this limitation, we present a novel open-access dataset, the **Photon Shielding Spectra Dataset (PSSD)**, which provides photon fluence shielding spectra for 92 elements across thicknesses of up to 40 mean free paths. PSSD enhances the adaptability of traditional buildup factors, supports the conversion between multiple physical quantities, and can be seamlessly integrated with advanced AI techniques for improved accuracy and efficiency in radiation safety assessments and shielding design. This dataset serves as a valuable resource for rapid analysis and future research in nuclear science and engineering.
DOI: 10.6084/m9.figshare.28930319.v1
title: A Simulated Comprehensive Photon Fluence Shielding Spectra Dataset for Advanced Radiation Safety Assessment

description: Nuclear energy plays a pivotal role in global energy production, especially as a sustainable and green energy source. However, nuclear reactions produce byproducts such as spent fuel and radioactive waste, which emit gamma radiation and pose significant risks to human health and safety. Accurate radiation hazard assessments are therefore essential throughout the design and maintenance phases of nuclear facilities, relying heavily on simulations informed by experimental and evaluated nuclear data. Among various computational methods, the Point Kernel method is widely adopted in engineering practice due to its high computational efficiency. A key element of this method is the use of pre-defined coefficients known as buildup factors, which critically impact simulation accuracy. However, the most used dataset—published in the ANSI reports—is outdated in both format and scope, lacking sufficient data to support reliable simulations and hindering further research. To address this limitation, we present a novel open-access dataset, the **Photon Shielding Spectra Dataset (PSSD)**, which provides photon fluence shielding spectra for 92 elements across thicknesses of up to 40 mean free paths. PSSD enhances the adaptability of traditional buildup factors, supports the conversion between multiple physical quantities, and can be seamlessly integrated with advanced AI techniques for improved accuracy and efficiency in radiation safety assessments and shielding design. This dataset serves as a valuable resource for rapid analysis and future research in nuclear science and engineering.
DOI: 10.6084/m9.figshare.27965139
title: Basis for selective drug evasion of an aminoglycoside-resistance ribosomal RNA modification

description: Structural coordinates, cryo-EM maps, and PDB validation reports for three E. coli 70S ribosome-aminoglycoside complex structures. The complexes are:
1. G418 bound to 70S with 16S rRNA m1A1408 modified.
2. Arbekacin bound to 70S with 16S rRNA unmodified.
3. Arbekacin bound to 70S with 16S rRNA modified m1A1408.
DOI: 10.6084/m9.figshare.27965139.v1
title: Basis for selective drug evasion of an aminoglycoside-resistance ribosomal RNA modification

description: Structural coordinates, cryo-EM maps, and PDB validation reports for three E. coli 70S ribosome-aminoglycoside complex structures. The complexes are:
1. G418 bound to 70S with 16S rRNA m1A1408 modified.
2. Arbekacin bound to 70S with 16S rRNA unmodified.
3. Arbekacin bound to 70S with 16S rRNA modified m1A1408.
DOI: 10.15468/dl.y69gtc
title: Occurrence Download

description: A dataset containing 79 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes nigrum",
 "Country is Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 79 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002962-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bcdwd
title: Occurrence Download

description: A dataset containing 2460 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lindera aggregata"
 ]
}

 The dataset includes 2460 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002964-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15254390
title: A global dataset of soil organic carbon accumulation rate in coastal ecosystems

description: Coastal ecosystems are increasingly recognized as a vital nature-based climate solution due to their exceptional capacity for carbon sequestration. However, the spatial distribution and quantification of soil organic carbon accumulation rate (OCAR) at the global scale remain limited. Here, we assemble an open global dataset of soil OCAR in coastal ecosystems from a systematic literature review. The dataset has 8,839 field observations reported in 247 peer-reviewed articles, encompassing four ecosystem types (mangroves, salt marshes, seagrasses, and tidal flats) and two measurement methods (Radiometric dating and Surface Elevation Table-Marker Horizon). Furthermore, the inherent information of the articles and the geographical information of the monitoring locations were included in the dataset. The dataset can be used to more accurately quantify and map global coastal soil carbon sequestration capacity, enabling the development of global spatial-temporal prediction models. This dataset serves as a vital scientific foundation for the management strategies of coastal ecosystems and future carbon credit markets.
DOI: 10.15468/dl.77kfrm
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Carex breviscapa"
 ]
}

 The dataset includes 151 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002965-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.95r6r6
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Codium arabicum",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002967-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v28gmr
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ribes nigrum",
 "Country is Latvia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 31 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002966-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15253511
title: A global dataset of soil organic carbon accumulation rate in coastal ecosystems

description: Coastal ecosystems are increasingly recognized as a vital nature-based climate solution due to their exceptional capacity for carbon sequestration. However, the spatial distribution and quantification of soil organic carbon accumulation rate (OCAR) at the global scale remain limited. Here, we assemble an open global dataset of soil OCAR in coastal ecosystems from a systematic literature review. The dataset has 8,839 field observations reported in 247 peer-reviewed articles, encompassing four ecosystem types (mangroves, salt marshes, seagrasses, and tidal flats) and two measurement methods (Radiometric dating and Surface Elevation Table-Marker Horizon). Furthermore, the inherent information of the articles and the geographical information of the monitoring locations were included in the dataset. The dataset can be used to more accurately quantify and map global coastal soil carbon sequestration capacity, enabling the development of global spatial-temporal prediction models. This dataset serves as a vital scientific foundation for the management strategies of coastal ecosystems and future carbon credit markets.
DOI: 10.15468/dl.j57f2p
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalius peloponensis",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON ((-6.6 29.26705, -6.6 50.94, 40.81373 50.94, 40.81373 29.26705, -6.6 29.26705))",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Observation, Material sample)"
 ]
}

 The dataset includes 6 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002970-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yz6ygz
title: Occurrence Download

description: A dataset containing 118404 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Chaenorhinum minus"
 ]
}

 The dataset includes 118404 records from 1045 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002882-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15597012
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250604w Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250604w Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5281/zenodo.15597013
title: Submitted Galaxy Scores to the Gravitational Wave Treasure Map for event MS250604w Initial

description: Attached in a .json file is the ranked galaxy information within the contour region of the EM counterpart search associated with the gravitational wave event MS250604w Initial. A reference to these calculations can be found here: https://ui.adsabs.harvard.edu/abs/2017ApJ...848L..33A/abstract
DOI: 10.5517/ccdc.csd.cc26b3th
title: CCDC 2035516: Experimental Crystal Structure Determination

description: Related Article: Lin Li, Haibing Han, Yuying Fu, Jinjian Liu|2025|J.Mol.Struct.|1348|143450|doi:10.1016/j.molstruc.2025.143450
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29czj6
title: CCDC 2126678: Experimental Crystal Structure Determination

description: Related Article: Zhi-Yong Jiang, Lin Chen, Hong-Xi Xie, Jun-Jie Hao, Rong Chen, Chun-Qiu Huang, Hong-Lei Zhang, Ai-Xue Zuo|2025|Phytochemistry|240|114626|doi:10.1016/j.phytochem.2025.114626
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc29czk7
title: CCDC 2126679: Experimental Crystal Structure Determination

description: Related Article: Zhi-Yong Jiang, Lin Chen, Hong-Xi Xie, Jun-Jie Hao, Rong Chen, Chun-Qiu Huang, Hong-Lei Zhang, Ai-Xue Zuo|2025|Phytochemistry|240|114626|doi:10.1016/j.phytochem.2025.114626
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gt5t9
title: CCDC 2288321: Experimental Crystal Structure Determination

description: Related Article: Kang Zhou, Jian Huang, Hongli Jia, Pianpian Wang, Bin Wang, Wei Cheng, Wenhan Lin|2025|Eur. J. Med. Chem. Rep.|15|100287|doi:10.1016/j.ejmcr.2025.100287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gt5vb
title: CCDC 2288322: Experimental Crystal Structure Determination

description: Related Article: Kang Zhou, Jian Huang, Hongli Jia, Pianpian Wang, Bin Wang, Wei Cheng, Wenhan Lin|2025|Eur. J. Med. Chem. Rep.|15|100287|doi:10.1016/j.ejmcr.2025.100287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gt5xd
title: CCDC 2288324: Experimental Crystal Structure Determination

description: Related Article: Kang Zhou, Jian Huang, Hongli Jia, Pianpian Wang, Bin Wang, Wei Cheng, Wenhan Lin|2025|Eur. J. Med. Chem. Rep.|15|100287|doi:10.1016/j.ejmcr.2025.100287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gt5zg
title: CCDC 2288326: Experimental Crystal Structure Determination

description: Related Article: Kang Zhou, Jian Huang, Hongli Jia, Pianpian Wang, Bin Wang, Wei Cheng, Wenhan Lin|2025|Eur. J. Med. Chem. Rep.|15|100287|doi:10.1016/j.ejmcr.2025.100287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2gt62l
title: CCDC 2288329: Experimental Crystal Structure Determination

description: Related Article: Kang Zhou, Jian Huang, Hongli Jia, Pianpian Wang, Bin Wang, Wei Cheng, Wenhan Lin|2025|Eur. J. Med. Chem. Rep.|15|100287|doi:10.1016/j.ejmcr.2025.100287
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mq74r
title: CCDC 2434434: Experimental Crystal Structure Determination

description: Related Article: Man Cao, Wenguang Li, Tongtong Zong, Heyun Sheng, Xu Zhang, Ming Chen, Wenchao Gao, Yongqi Yu, Ting Li|2025|J.Org.Chem.|90|11382|doi:10.1021/acs.joc.5c00863
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxxk1
title: CCDC 2440864: Experimental Crystal Structure Determination

description: Related Article: Ferran Esteve, Zhaozheng Yang, Jean-Marie Lehn|2025|J.Am.Chem.Soc.|147|28408|doi:10.1021/jacs.5c09521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxxp5
title: CCDC 2440868: Experimental Crystal Structure Determination

description: Related Article: Ferran Esteve, Zhaozheng Yang, Jean-Marie Lehn|2025|J.Am.Chem.Soc.|147|28408|doi:10.1021/jacs.5c09521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxxq6
title: CCDC 2440869: Experimental Crystal Structure Determination

description: Related Article: Ferran Esteve, Zhaozheng Yang, Jean-Marie Lehn|2025|J.Am.Chem.Soc.|147|28408|doi:10.1021/jacs.5c09521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxxr7
title: CCDC 2440870: Experimental Crystal Structure Determination

description: Related Article: Ferran Esteve, Zhaozheng Yang, Jean-Marie Lehn|2025|J.Am.Chem.Soc.|147|28408|doi:10.1021/jacs.5c09521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2mxxs8
title: CCDC 2440871: Experimental Crystal Structure Determination

description: Related Article: Ferran Esteve, Zhaozheng Yang, Jean-Marie Lehn|2025|J.Am.Chem.Soc.|147|28408|doi:10.1021/jacs.5c09521
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.22002/zxz90-sft78
title: Hpylori_dFliF_FISE

description: These are H_pylori cells that are lacking FliP protein. In these cells, FliF protein was knocked out  .  to examine its relation to the hat-like complex.
description: <strong>Tilt Series Date:</strong> 2020-10-08</p>
<strong>Data Taken By:</strong> Mohammed Kaplan</p>
<strong>Species / Specimen:</strong> Helicobacter pylori</p>
<strong>Strain:</strong> 26695</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 19500x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> The cells were prepared and sent by Carrie Schaffer from the university of Kentucky. The cells were grown at 37C with 5% CO2 on sheep blood agar plates for 2 days from a -80C. No growth was seen . on the plates after 24 hr therefore the plates were kept in the . incubator for another 24Hr.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> The samples were prepared with Vitrobot IV. Blotting conditions were either: blot force 6, blot . time 3, drain time 1 OR blot force -3, blot time 4, drain time 1, 100%  humidity. Cu grids. 10 nm . gold</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mka2020-10-08-323/rawdata/</p>Hpylori_DFliF_FISE_328.mrc,  Tilt Series (Pixel Size 0.452 nm), 1.9 GB  
        
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        Hpylori_DFliF_FISE_328_full.rec,  Reconstruction (Pixel Size 1.808 nm), 737.3 MB  
        
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