cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21098884.v1
title: Metabolome analysis of sugarcane root inoculated by nitrogen fixing bacteria GXS16

description: Sugarcane growth and yield are complex biological processes influenced by endophytic nitrogen-fixing bacteria, for which the molecular mechanisms involved are largely unknown. In this study, integrated metabolomic and transcriptomic analyses were conducted to investigate the interaction between an endophytic bacterial strain, <em>Burkholderia</em> GXS16, and sugarcane tissue culture seedlings at four different stages.
DOI: 10.5281/zenodo.7076890
title: Viral metagenomic sequences from Mediterranean grassland soils

description: Database of 6088 de-replicated viral contigs identified in viral-fraction metagenomes (viromes) generated from Mediterranean grassland soils.
DOI: 10.5281/zenodo.7076889
title: Viral metagenomic sequences from Mediterranean grassland soils

description: Database of 6088 de-replicated viral contigs identified in viral-fraction metagenomes (viromes) generated from Mediterranean grassland soils.
DOI: 10.5281/zenodo.7075696
title: Data files associated with the U-net prediction of urban canopy flow

description: Folder "testing_data" includes the input (urban canopy structure), output (LES velocity field), and prediction (velocity field from trained network) for general test cases. Folder "perturbed_data" includes the input (urban canopy structure), output (LES velocity field), and prediction (velocity field from trained network) for perturbed test cases. Input: dataX_xxxxxx Output: dataY_xxxxxx Prediction: pred_xxxxxx
DOI: 10.5281/zenodo.7075695
title: Data files associated with the U-net prediction of urban canopy flow

description: Folder "testing_data" includes the input (urban canopy structure), output (LES velocity field), and prediction (velocity field from trained network) for general test cases. Folder "perturbed_data" includes the input (urban canopy structure), output (LES velocity field), and prediction (velocity field from trained network) for perturbed test cases. Input: dataX_xxxxxx Output: dataY_xxxxxx Prediction: pred_xxxxxx
DOI: 10.6084/m9.figshare.14028930
title: Hooper visual organization test: Psychometric properties and regression-based norms for the Venezuelan population

description: The Hooper Visual Organization Test (HVOT) is used to assess visual organization and visual synthesis. Psychometric studies reveal cultural biases and associations between demographic variables and test performance capable of compromising the test’s clinical utility. The present study aimed to adapt the HVOT, explore the psychometric properties of this test, and develop regression-based norms for the Venezuelan population. Using a cross-sectional design, the HVOT was administered to a stratified sample of 351 healthy adults (20–85 years of age and 0–23 years of education) from the Metropolitan Area of Caracas. The results revealed good levels of internal consistency and reliability. Confirmatory Factor Analysis suggests that the HVOT is unidimensional. Item difficulty, types and rate of errors and inappropriateness of some items indicated a potential cultural bias in our Venezuelan sample. Spearman’s Correlation and Wilcoxon Rank test analysis (<i>p</i>&lt;.001) showed a significant association between HVOT total score and age, education, and gender, but not with socioeconomic status. We present regression-norms stratified by age, years of education, and gender. Cultural biases were noted, which highlights the need for a revision of items in terms of inclusion, scoring, and order of presentation. Future studies of concurrent and predictive validity are needed.
DOI: 10.6084/m9.figshare.14390747
title: Brief executive-function assessment tool: A new cognitive impairment screening tool for alcohol and other drug services

description: Accurate screening for cognitive impairment in alcohol and other drug (AOD) services would help to identify individuals who may need supports to obtain the greatest benefit from substance use disorder (SUD) treatment. At present there is no screening measure that has been developed specifically to detect cognitive impairment in a SUD population. This study examines the psychometric properties of the Brief Executive-function Assessment Tool (BEAT), which was specifically designed for this purpose. This study involving 501 individuals with SUD and 145 normal control participants established internal consistency (<i>n</i> = 646; 0.734), interrater (<i>n</i> = 60; 0.994), and test–retest reliability (<i>n</i> = 177; 0.845), and construct (all correlations <i>p</i> ≤ 0.05), and criterion (<i>n</i> = 467; ANCOVA <i>p</i> &lt; 0.001) validity. Test operating characteristics (<i>n</i> = 500; 87% sensitivity, 71% specificity, 21% <i>PPP</i>, and 99% <i>NPP</i>) were also established relative to an independent criterion variable made up of three established performance-based neuropsychological tests. Findings support the reliability and validity of the BEAT as a screening measure of executive function impairment with high sensitivity and a low rate of false negatives.
DOI: 10.6084/m9.figshare.14219731.v1
title: The Turkish translation study of the Cognitive Reserve Index Questionnaire (CRIq)

description: Cognitive reserve (CR) is defined as the ability of individuals to use their brain in a flexible way to cope with brain pathologies and find alternative cognitive strategies. The aim of this study was to adapt Cognitive Reserve Index Questionnaire (CRIq) for Turkish population. The CRIq was administered to 178 healthy participants from 18 to 80 years old. The mean score of total CRI was found to be 97.7 indicating a medium level of CR. In line with the mean score, 68.6% of participants (<i>n</i> = 120) were found to have a medium level of CRI. The elderly group showed lowest total CRI as well as CRI-education, CRI-work, and CRI-leisure scores compared to young and middle-aged groups (<i>p</i> &lt; .05, for all scores). This study provided the first translated measure to assess CR in Turkish population.
DOI: 10.6084/m9.figshare.14390747.v1
title: Brief executive-function assessment tool: A new cognitive impairment screening tool for alcohol and other drug services

description: Accurate screening for cognitive impairment in alcohol and other drug (AOD) services would help to identify individuals who may need supports to obtain the greatest benefit from substance use disorder (SUD) treatment. At present there is no screening measure that has been developed specifically to detect cognitive impairment in a SUD population. This study examines the psychometric properties of the Brief Executive-function Assessment Tool (BEAT), which was specifically designed for this purpose. This study involving 501 individuals with SUD and 145 normal control participants established internal consistency (<i>n</i> = 646; 0.734), interrater (<i>n</i> = 60; 0.994), and test–retest reliability (<i>n</i> = 177; 0.845), and construct (all correlations <i>p</i> ≤ 0.05), and criterion (<i>n</i> = 467; ANCOVA <i>p</i> &lt; 0.001) validity. Test operating characteristics (<i>n</i> = 500; 87% sensitivity, 71% specificity, 21% <i>PPP</i>, and 99% <i>NPP</i>) were also established relative to an independent criterion variable made up of three established performance-based neuropsychological tests. Findings support the reliability and validity of the BEAT as a screening measure of executive function impairment with high sensitivity and a low rate of false negatives.
DOI: 10.6084/m9.figshare.14028930.v1
title: Hooper visual organization test: Psychometric properties and regression-based norms for the Venezuelan population

description: The Hooper Visual Organization Test (HVOT) is used to assess visual organization and visual synthesis. Psychometric studies reveal cultural biases and associations between demographic variables and test performance capable of compromising the test’s clinical utility. The present study aimed to adapt the HVOT, explore the psychometric properties of this test, and develop regression-based norms for the Venezuelan population. Using a cross-sectional design, the HVOT was administered to a stratified sample of 351 healthy adults (20–85 years of age and 0–23 years of education) from the Metropolitan Area of Caracas. The results revealed good levels of internal consistency and reliability. Confirmatory Factor Analysis suggests that the HVOT is unidimensional. Item difficulty, types and rate of errors and inappropriateness of some items indicated a potential cultural bias in our Venezuelan sample. Spearman’s Correlation and Wilcoxon Rank test analysis (<i>p</i>&lt;.001) showed a significant association between HVOT total score and age, education, and gender, but not with socioeconomic status. We present regression-norms stratified by age, years of education, and gender. Cultural biases were noted, which highlights the need for a revision of items in terms of inclusion, scoring, and order of presentation. Future studies of concurrent and predictive validity are needed.
DOI: 10.6084/m9.figshare.14219731
title: The Turkish translation study of the Cognitive Reserve Index Questionnaire (CRIq)

description: Cognitive reserve (CR) is defined as the ability of individuals to use their brain in a flexible way to cope with brain pathologies and find alternative cognitive strategies. The aim of this study was to adapt Cognitive Reserve Index Questionnaire (CRIq) for Turkish population. The CRIq was administered to 178 healthy participants from 18 to 80 years old. The mean score of total CRI was found to be 97.7 indicating a medium level of CR. In line with the mean score, 68.6% of participants (<i>n</i> = 120) were found to have a medium level of CRI. The elderly group showed lowest total CRI as well as CRI-education, CRI-work, and CRI-leisure scores compared to young and middle-aged groups (<i>p</i> &lt; .05, for all scores). This study provided the first translated measure to assess CR in Turkish population.
DOI: 10.6084/m9.figshare.20924587
title: Single-molecule mass photometry of human tau (0N4R) aggregation

description: Video files from mass photometry of tau aggregation. Video files are in mp4 format, compressed to reduce file size. Files are named CR_Xmin_i (to denote the i'th replicate measurement made after X minutes of incubation with Congo red) or noCR_Xhr_i (to denote the i'th replicate measurement made after X hours of incubation without Congo red).
DOI: 10.6084/m9.figshare.20924587.v1
title: Single-molecule mass photometry of human tau (0N4R) aggregation

description: Video files from mass photometry of tau aggregation. Video files are in mp4 format, compressed to reduce file size. Files are named CR_Xmin_i (to denote the i'th replicate measurement made after X minutes of incubation with Congo red) or noCR_Xhr_i (to denote the i'th replicate measurement made after X hours of incubation without Congo red).
DOI: 10.34740/kaggle/dsv/4201465
title: Russian Invasion of Ukraine
DOI: 10.6084/m9.figshare.21098470.v1
title: Chromosome-level genome assembly and population genomics of Mongolian racerunner (Eremias argus) provide insights into high-altitude adaptation in lizards

description: We report the first chromosome-level assembly of the Mongolian racerunner (<em>Eremias argus</em>) genome.
DOI: 10.6084/m9.figshare.21090031
title: Waveform data and P-wave travel times of the methane sources for the dense arrays beneath the Chenghai fault zone, Yunnan, China

description: To obtain the fine structure of the Chenghai fault zone and the nearby basins, we deployed two dense arrays and excited 8 methane sources across the fault from October to November 2020. The Line1 and Line2 dense arrays consist of 80 and 120 Zland 3C short-period three-component nodal seismograph with average station spacing of 50–100 m, respectively. These stations have a sampling rate of 500 points per second during the 35‐day deployment. The methane sources were buried in drill holes with depths of 4–10 m, which can excite seismic waves by igniting oxygen and combustible gas (such as hydrogen, methane, etc.) with the reaction products of carbon dioxide and water. This dataset is the raw waveforms and P-wave travel times of the methane sources , including information such as excitation time, excitation and station locations, etc.
DOI: 10.6084/m9.figshare.21090031.v1
title: ChenghaiFault_Linear_Array_MethaneSource_Waveforms and P-wave travel times

description: To obtain the fine structure of the Chenghai fault zone and the nearby basins, we deployed two dense arrays and excited 8 methane sources across the fault from October to November 2020. The Line1 and Line2 dense arrays consist of 80 and 120 Zland 3C short-period three-component nodal seismograph with average station spacing of 50–100 m, respectively. These stations have a sampling rate of 500 points per second during the 35‐day deployment. The methane sources were buried in drill holes with depths of 4–10 m, which can excite seismic waves by igniting oxygen and combustible gas (such as hydrogen, methane, etc.) with the reaction products of carbon dioxide and water. This dataset is the raw waveforms and P-wave travel times of the methane sources , including information such as excitation time, excitation and station locations, etc.
DOI: 10.6084/m9.figshare.21100483
title: Puromycin dose-response data and growth curves

description: Raw data for paper on mRNA processing in Trypanosoma brucei
DOI: 10.6084/m9.figshare.21100483.v1
title: Puromycin dose-response data and growth curves

description: Raw data for paper on mRNA processing in Trypanosoma brucei
DOI: 10.6084/m9.figshare.20802493
title: Self-selection raw data from Does trappability and self-selection influence cognitive performance?

description: Recent research has highlighted how trappability and self-selection—the processes by which individuals with particular traits may be more likely to be caught or to participate in experiments—may be sources of bias in studies of animal behaviour and cognition. It is crucial to determine whether such biases exist, and if they do, what effect they have on results. In this study, we investigated if trappability (quantified through ‘ringing status’—whether or not a bird had been trapped for ringing) and self-selection are sources of bias in a series of associative learning experiments spanning 5 years in the Western Australian magpie (<i>Gymnorhina tibicen dorsalis</i>). We found no evidence of self-selection, with no biases in task participation associated with sex, age, group size or ringing status. In addition, we found that there was no effect of trappability on cognitive performance. These findings give us confidence in the results generated in the animal cognition literature and add to a growing body of literature seeking to determine potential sources of bias in studies of animal behaviour, and how they influence the generalizability and reproducibility of findings.
DOI: 10.6084/m9.figshare.20802493.v1
title: Self-selection raw data from Does trappability and self-selection influence cognitive performance?

description: Recent research has highlighted how trappability and self-selection—the processes by which individuals with particular traits may be more likely to be caught or to participate in experiments—may be sources of bias in studies of animal behaviour and cognition. It is crucial to determine whether such biases exist, and if they do, what effect they have on results. In this study, we investigated if trappability (quantified through ‘ringing status’—whether or not a bird had been trapped for ringing) and self-selection are sources of bias in a series of associative learning experiments spanning 5 years in the Western Australian magpie (<i>Gymnorhina tibicen dorsalis</i>). We found no evidence of self-selection, with no biases in task participation associated with sex, age, group size or ringing status. In addition, we found that there was no effect of trappability on cognitive performance. These findings give us confidence in the results generated in the animal cognition literature and add to a growing body of literature seeking to determine potential sources of bias in studies of animal behaviour, and how they influence the generalizability and reproducibility of findings.
DOI: 10.6084/m9.figshare.20802499
title: Trappability raw data from Does trappability and self-selection influence cognitive performance?

description: Recent research has highlighted how trappability and self-selection—the processes by which individuals with particular traits may be more likely to be caught or to participate in experiments—may be sources of bias in studies of animal behaviour and cognition. It is crucial to determine whether such biases exist, and if they do, what effect they have on results. In this study, we investigated if trappability (quantified through ‘ringing status’—whether or not a bird had been trapped for ringing) and self-selection are sources of bias in a series of associative learning experiments spanning 5 years in the Western Australian magpie (<i>Gymnorhina tibicen dorsalis</i>). We found no evidence of self-selection, with no biases in task participation associated with sex, age, group size or ringing status. In addition, we found that there was no effect of trappability on cognitive performance. These findings give us confidence in the results generated in the animal cognition literature and add to a growing body of literature seeking to determine potential sources of bias in studies of animal behaviour, and how they influence the generalizability and reproducibility of findings.
DOI: 10.6084/m9.figshare.20802499.v1
title: Trappability raw data from Does trappability and self-selection influence cognitive performance?

description: Recent research has highlighted how trappability and self-selection—the processes by which individuals with particular traits may be more likely to be caught or to participate in experiments—may be sources of bias in studies of animal behaviour and cognition. It is crucial to determine whether such biases exist, and if they do, what effect they have on results. In this study, we investigated if trappability (quantified through ‘ringing status’—whether or not a bird had been trapped for ringing) and self-selection are sources of bias in a series of associative learning experiments spanning 5 years in the Western Australian magpie (<i>Gymnorhina tibicen dorsalis</i>). We found no evidence of self-selection, with no biases in task participation associated with sex, age, group size or ringing status. In addition, we found that there was no effect of trappability on cognitive performance. These findings give us confidence in the results generated in the animal cognition literature and add to a growing body of literature seeking to determine potential sources of bias in studies of animal behaviour, and how they influence the generalizability and reproducibility of findings.
DOI: 10.6084/m9.figshare.21101335
title: Communication and swallowing changes, everyday impacts and access to speech-language pathology services for people with Parkinson's disease: An Australian survey

description: To investigate people with Parkinson's disease (PwPD): 1) self-reported communication and swallowing difficulties due to Parkinson's disease (PD), 2) participation and psychosocial impacts of these difficulties and 3) experience with and access to speech-language pathology (SLP) services. A cross-sectional mix-methods survey was conducted using nonprobability, purposive sampling for recruitment. An inclusion criterion was that participants needed to have self-reported communication and/or swallowing changes due to PD. Descriptive statistics and thematic analysis were utilised. All of the 78 PwPD who participated reported changes to their communication (97%) and/or swallowing (93%). A diverse range of participation restrictions was found in social, recreational, vocational and everyday living activities. Adverse emotional impacts including frustration, loss of self-confidence, depression and isolation were reported due to these changes. Only 59% of our sample had accessed SLP services. The most common reason for PwPD not accessing services was that neither their general practitioner nor neurologist had referred them to SLP. The majority of PwPD wanted to access SLP at some point in the future. Wide variability in the SLP services provided was evident. Most of the PwPD who had received SLP support wanted further ongoing management. This study provided insight into the everyday impacts of communication and swallowing changes experienced by PwPD, and the gap between service supply and demand.
DOI: 10.6084/m9.figshare.21101335.v1
title: Communication and swallowing changes, everyday impacts and access to speech-language pathology services for people with Parkinson's disease: An Australian survey

description: To investigate people with Parkinson's disease (PwPD): 1) self-reported communication and swallowing difficulties due to Parkinson's disease (PD), 2) participation and psychosocial impacts of these difficulties and 3) experience with and access to speech-language pathology (SLP) services. A cross-sectional mix-methods survey was conducted using nonprobability, purposive sampling for recruitment. An inclusion criterion was that participants needed to have self-reported communication and/or swallowing changes due to PD. Descriptive statistics and thematic analysis were utilised. All of the 78 PwPD who participated reported changes to their communication (97%) and/or swallowing (93%). A diverse range of participation restrictions was found in social, recreational, vocational and everyday living activities. Adverse emotional impacts including frustration, loss of self-confidence, depression and isolation were reported due to these changes. Only 59% of our sample had accessed SLP services. The most common reason for PwPD not accessing services was that neither their general practitioner nor neurologist had referred them to SLP. The majority of PwPD wanted to access SLP at some point in the future. Wide variability in the SLP services provided was evident. Most of the PwPD who had received SLP support wanted further ongoing management. This study provided insight into the everyday impacts of communication and swallowing changes experienced by PwPD, and the gap between service supply and demand.
DOI: 10.6084/m9.figshare.12845505
title: Sound discrimination and explicit mapping of sounds to meanings in preschoolers with and without developmental language disorder

description: To investigate links between sound discrimination and explicit sound-meaning mapping by preschoolers with and without developmental language disorder (DLD). We tested 26 children with DLD and 26 age- and gender-matched peers with typical language development (TLD). Inclusion was determined via results of standardised assessments of language and cognitive skills and a hearing screening. Children completed two computerised tasks designed to assess pitch and duration discrimination and explicit mapping of pitch- and duration-contrasting sounds to objects. Children with TLD more successfully mapped pitch categories to meanings than children with DLD. Children with TLD also showed significantly better overall sound discrimination than children with DLD. Sound-discrimination scores were marginally associated with overall sound-meaning mapping in multivariate analyses of covariance (MANCOVAs). Correlation tests indicated significant associations between discrimination and mapping, with moderate to large effect sizes. Thus, significant sound-discrimination differences between the groups may contribute to differences in sound-meaning-mapping accuracy. Children with DLD had more difficulty mapping sound categories to meanings than TLD peers. We discuss possible explanations for this finding and implications for theoretical accounts of the aetiology of DLD.
DOI: 10.5281/zenodo.7069764
title: Raw data and analysis code of single-molecule analysis

description: codes and raw data of single-molecule analysis
DOI: 10.5281/zenodo.7069763
title: Raw data and analysis code of single-molecule analysis

description: codes and raw data of single-molecule analysis