cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.9tygdj
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crassula gemmifera Friedrich",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((31.8862 -21.3285,30.5701 -20.3186,30.5701 -24.0715,35.5909 -24.0715,35.6007 -24.0157,35.6007 -23.8125,35.4969 -23.7035,35.6007 -23.165,35.6007 -22.9702,35.227 -22.2482,34.6862 -21.6944,34.013 -21.3095,33.5 -21.1593,32.9675 -21.1092,32.4352 -21.1612,31.8862 -21.3285))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044491-250525065834625/datasets/export for details.
DOI: 10.15468/dl.76pr3d
title: Occurrence Download

description: A dataset containing 100 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "OccurrenceStatus is Present",
 "TaxonKey is Stenocercus ornatissimus (Girard, 1858)"
 ]
}

 The dataset includes 100 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044490-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gqcgp4
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gomphonema angusta (Rabenhorst)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044492-250525065834625/datasets/export for details.
DOI: 10.6073/pasta/4d4da899ec06fbaa120a89754d30f43d
title: Jornada Basin and Experimental Range Mesquite Herbicide Project (JERHM) Core Methods Data, 2020-2022

description: This dataset includes contains line-point intercept, plant height, gap, and species inventory data collected over three years (2020-2022) as part of the Jornada Experimental Range Herbicide Mesquite Project (JERHM). Data were collected to assess plant community composition and structural change to herbicide application across a Black grama (Bouteloua eriopoda) grassland to Honey mesquite (Neltuma glandulosa [=Prosopis glandulosa]) shrubland encroachment gradient. Twenty sets of paired, 5-hectare plots (n=40 plots total) were established across a N. glandulosa encroachment gradient in 2020. One plot within each plot pair received an aerial application of herbicide in 2021, with the second plot left untreated by herbicide as a control. Data were collected annually following the following the Monitoring Manual for Grassland, Shrubland, and Savanna Ecosystems (Herrick et al. 2017) on each of three, 50m permanent transects established on each plot. These data are also available within the Landscape Data Commons (https://landscapedatacommons.org/) under ProjectKey=Jornada_JERHM. There are no immediate plans to continue data collection.
DOI: 10.15468/dl.pbwysk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Crassula gemmifera Friedrich",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((27.1586 -33.5889,28.2048 -32.9007,25.5395 -32.9007,25.5395 -34.1098,25.6468 -34.1222,25.7787 -34.0734,25.7098 -33.9109,25.8639 -33.797,26.4806 -33.8473,27.1586 -33.5889))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044494-250525065834625/datasets/export for details.
DOI: 10.15468/dl.nhgqcd
title: Occurrence Download

description: A dataset containing 2595 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Mabea fistulifera Mart."
 ]
}

 The dataset includes 2595 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044493-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29309843
title: Figure 8C, D

description: <b>A. </b>THP-1 cells were infected by spinoculation with an MOI of 20 with either nonfluorescent TB40/E, UL88-STOP, or UL88-Rev, the latter two of which express GFP driven from the IE2 promoter or were left uninfected. GFP fluorescence was measured by flow cytometry at d5 post infection. <b>B.</b> Schematic representation of the experiment methodology for <b>C</b> and <b>D</b>.<b> </b>At day 3, 2.5 x 10<sup>5</sup> THP-1, of which ~ 2.5 x 10<sup>4</sup> were HCMV-infected, were transferred onto a monolayer of ~ 2.5 x 10<sup>5</sup> HDFs and virus spread was monitored every three days by confocal imaging up to day 15. <b>C</b>. Representative images of TB40/E-GFP and UL88-STOP from day 3 and day 7 are shown. <b>D.</b> The spread of infection was quantified as the area of fluorescence using the NIS element software.<b> </b>Graph shows fold change in area of fluorescence for each virus. <b>E. </b>MRC-5 cells were infected with TB40/E-mCh or UL88-STOP-mCh virus at MOI of 0.05. Cells were harvested for RNA isolation at 7 dpi. Antiviral gene expression was profiled using a set of 84 ISGs by qPCR. Results are plotted as volcano plot depicting the modulated genes as compared between TB40/E WT HCMV and UL88-STOP HCMV infection. <b>F</b>. ISGs known to be modulated in HCMV infection are shown with their relative fold change in mRNA levels (normalized to GAPDH) between TB40/E WT and UL88-STOP virus infection. The graph shows the genes that remained unchanged (green box), downregulated (red box), or upregulated (blue box), in TB40/E WT vs UL88-STOP HCMV-infected cells. Results are from biological triplicates.
DOI: 10.6084/m9.figshare.29309843.v1
title: Figure 8C, D

description: <b>A. </b>THP-1 cells were infected by spinoculation with an MOI of 20 with either nonfluorescent TB40/E, UL88-STOP, or UL88-Rev, the latter two of which express GFP driven from the IE2 promoter or were left uninfected. GFP fluorescence was measured by flow cytometry at d5 post infection. <b>B.</b> Schematic representation of the experiment methodology for <b>C</b> and <b>D</b>.<b> </b>At day 3, 2.5 x 10<sup>5</sup> THP-1, of which ~ 2.5 x 10<sup>4</sup> were HCMV-infected, were transferred onto a monolayer of ~ 2.5 x 10<sup>5</sup> HDFs and virus spread was monitored every three days by confocal imaging up to day 15. <b>C</b>. Representative images of TB40/E-GFP and UL88-STOP from day 3 and day 7 are shown. <b>D.</b> The spread of infection was quantified as the area of fluorescence using the NIS element software.<b> </b>Graph shows fold change in area of fluorescence for each virus. <b>E. </b>MRC-5 cells were infected with TB40/E-mCh or UL88-STOP-mCh virus at MOI of 0.05. Cells were harvested for RNA isolation at 7 dpi. Antiviral gene expression was profiled using a set of 84 ISGs by qPCR. Results are plotted as volcano plot depicting the modulated genes as compared between TB40/E WT HCMV and UL88-STOP HCMV infection. <b>F</b>. ISGs known to be modulated in HCMV infection are shown with their relative fold change in mRNA levels (normalized to GAPDH) between TB40/E WT and UL88-STOP virus infection. The graph shows the genes that remained unchanged (green box), downregulated (red box), or upregulated (blue box), in TB40/E WT vs UL88-STOP HCMV-infected cells. Results are from biological triplicates.
DOI: 10.15468/dl.36qw2m
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gomphonema angusta (Rabenhorst)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044495-250525065834625/datasets/export for details.
DOI: 10.15468/dl.q6kmdr
title: Occurrence Download

description: A dataset containing 59249 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium lucidum All.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 59249 records from 342 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044486-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25416/edgehill.26304694
title: Scoping Review - Coaching in Women's Football - Data Set 15/07/24

description: This data supports the scoping review - Coaching in women’s football - A scoping review. As the game grows the research strives to keep up. <b>Authors: </b>Mulvenna, C., Evans, N., Brady, A., McCall, A., Datson, N., Emmonds, S., and Okholm Kryger, K<b>.</b>The study reviewed all women’s football related studies scoped by Okholm Kryger et al. (2021) for their relevance to coaching in women’s football. Additionally, an updated search was performed from PubMed (1966–2023), PsycINFO (1967– 2023), Web of Science (1900–2023), Scopus (1788–2023), SPORTDiscus (1892–2023) on 7<sup>th</sup> December 2023. The author, journal, title, and abstract of all included studies were scoped. Information extracted during the scoping process included: the population, playing level, age group, environment, study type and geographical location of the research. A total of 373 articles were scoped. The publication topic most frequently researched was Performance Analysis - Physical, followed by Performance Analysis - Technical/Tactical and Maturation/Talent Identification. Most studies were focused on coaching senior players (n=207, 55%) and elite football (n=189, 51%). Despite the volume of research growing each year, it is noticeable there are gaps in the research. At present there is a particular emphasis on certain playing levels (elite football – 51%), playing populations (senior players 55%) and research topics (Physical Performance Analysis [20%] and Technical/Tactical Performance Analysis [14%]), which means there is a dearth of information in certain area.
DOI: 10.25416/edgehill.26304694.v1
title: Scoping Review - Coaching in Women's Football - Data Set 15/07/24

description: This data supports the scoping review - Coaching in women’s football - A scoping review. As the game grows the research strives to keep up. <b>Authors: </b>Mulvenna, C., Evans, N., Brady, A., McCall, A., Datson, N., Emmonds, S., and Okholm Kryger, K<b>.</b>The study reviewed all women’s football related studies scoped by Okholm Kryger et al. (2021) for their relevance to coaching in women’s football. Additionally, an updated search was performed from PubMed (1966–2023), PsycINFO (1967– 2023), Web of Science (1900–2023), Scopus (1788–2023), SPORTDiscus (1892–2023) on 7<sup>th</sup> December 2023. The author, journal, title, and abstract of all included studies were scoped. Information extracted during the scoping process included: the population, playing level, age group, environment, study type and geographical location of the research. A total of 373 articles were scoped. The publication topic most frequently researched was Performance Analysis - Physical, followed by Performance Analysis - Technical/Tactical and Maturation/Talent Identification. Most studies were focused on coaching senior players (n=207, 55%) and elite football (n=189, 51%). Despite the volume of research growing each year, it is noticeable there are gaps in the research. At present there is a particular emphasis on certain playing levels (elite football – 51%), playing populations (senior players 55%) and research topics (Physical Performance Analysis [20%] and Technical/Tactical Performance Analysis [14%]), which means there is a dearth of information in certain area.
DOI: 10.5281/zenodo.7834076
title: Seal Integrity in Sterile Barrier Packaging

description: Dataset containing 1200 images of Sterile Packaging of size (3008, 4110, 3), where 420 images contain defects and associated mask files.


This dataset was used to support publication: "Automatic Inspecting of Seal Integrity in Sterile Barrier Packaging: a Deep Learning Approach".


Trained models against this dataset can be found on:


- No Augmentation: 10.5281/zenodo.7858060


- Augmentation:  10.5281/zenodo.7858003


File descriptions:


- DS1.zip: Images and masks for the full dataset.


- Full-50.zip: Information for sub-split "Full-50". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-50.zip: Information for sub-split "Partial-50". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-40.zip: Information for sub-split "Partial-40". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-30.zip: Information for sub-split "Partial-30". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-20.zip: Information for sub-split "Partial-20". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-10.zip: Information for sub-split "Partial-10". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-05.zip: Information for sub-split "Partial-05". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv


- Partial-01.zip: Information for sub-split "Partial-01". Files: ds_info.json, Tesnting.csv, TrainingXVal.csv
DOI: 10.6084/m9.figshare.26362480
title: Supplementary Table 3 - PRISMA 2020 Checklist

description: PRISMA 2020 Checklist: Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) Checklist
DOI: 10.6084/m9.figshare.26362480.v1
title: PRISMA 2020 Checklist

description: PRISMA 2020 Checklist: Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) Checklist
DOI: 10.6084/m9.figshare.26362480.v2
title: Supplementary Table 3 - PRISMA 2020 Checklist

description: PRISMA 2020 Checklist: Preferred Reporting Items for Systematic reviews and Meta-Analyses (PRISMA) Checklist
DOI: 10.15468/dl.qjqfg2
title: Occurrence Download

description: A dataset containing 34129 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Popillia japonica Newman, 1838"
 ]
}

 The dataset includes 34129 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0229533-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25934/pr00010340
title: Data Challenge : Collateral sensitivity in antimicrobial susceptibility data

description: Antibiotic combination therapy is used clinically to broaden antibiotic coverage whilst mitigating the evolution of resistance, as such, it is the recommended first line of treatment in time-sensitive infections such as sepsis. Of particular interest is the use of combinatorial treatment that exploit the phenomena of collateral sensitivity, whereby decreased susceptibility towards one drug is associated with increased susceptibility towards a second drug. Of even greater clinical significance is reciprocal collateral sensitivity where this interaction is bidirectional, and this is therapeutically useful as bacteria become trapped in a cycle that ensures that they always remain susceptible to at least one of the drugs used in treatment, even if they develop resistance to the other. However, whilst collateral sensitivity is frequently measured within in vitro laboratory experiments, it is an understudied concept and there is scant evidence within clinical data, partially due to the lack of curated hospital MIC datasets. Now, a small number of studies exploring clinical MIC data do exist, for example a recent study of 448K antibiotic susceptibility test results from hospitals in Pittsburgh concluded that reciprocal collateral sensitivity is rare, whilst concurrent resistance (i.e. dual resistance and dual sensitivity) is common. We plan to analyse the ATLAS dataset to assess whether this scarcity of reciprocal collateral sensitivity is mirrored on a larger, global dataset, and where collateral interactions are identified, we hope to evaluate their clinical relevance. We will quantify these drug pair dependencies as mutual information scores, as well as utilising the unique feature of ATLAS, raw MIC data, to explore the directionality of MIC associations between drug pairs. We know that collateral sensitivity can be heterogenous amongst strains of the same species, even amongst replicates of the same bacterial isolate, and so we will also quantify cases of reciprocal collateral sensitivity within subpopulations that are conditioned on resistance towards a single antibiotic. Additionally, it is possible that antibiotic triplicates are required for collateral sensitivity rather than just pairs, and we will address this question using a Markov random field. Finally, we aim to identify patterns of dual sensitivity and dual resistance, both on a species level and when species identify is unknown (i.e. when treatment is empirical) to identify antibiotic pairs that are optimal for the avoidance of cross-resistance.
DOI: 10.6084/m9.figshare.25792668
title: Searching for pathogenic fungi of <i>Passiflora foetida sensu lato</i> in Colombia, South America, with potential for classical biological control in Australia

description: Interest in plant pathogens for classical biological control (CBC) of invasive introduced plants has increased steadily since the 1970s. The introduced plant <i>Passiflora foetida sensu lato</i> invades large tracts of land across northern Australia and CBC represents a possible solution to reduce its abundance and spread. Field surveys for foliar fungal pathogens of <i>P. foetida s.l.</i> were performed between 2017 and 2020 in Colombia. Molecular sequencing was used to confirm the identity of plants surveyed at each site and to explore genetic variation between sites. Leaf spots of various sizes and sometime associated with chlorosis as well as necrosis of leaf edges were the main disease symptoms observed. These symptoms were not severe and did not appear to affect plant growth. No disease symptoms caused by obligate biotrophic fungi nor girdling lesions on stems were observed. Of the 125 fungal isolates recovered from the collected diseased material, only 21 were considered as pathogenic on <i>P. foetida s.l.</i> in detached-leaf assays. Morphological examinations and sequencing of the 21 pathogenic isolates revealed that they belong to 11 genera. Based on the low severity of disease symptoms observed in the field, we conclude that these isolates do not warrant further investigations as potential CBC agents.
DOI: 10.6084/m9.figshare.25792668.v1
title: Searching for pathogenic fungi of <i>Passiflora foetida sensu lato</i> in Colombia, South America, with potential for classical biological control in Australia

description: Interest in plant pathogens for classical biological control (CBC) of invasive introduced plants has increased steadily since the 1970s. The introduced plant <i>Passiflora foetida sensu lato</i> invades large tracts of land across northern Australia and CBC represents a possible solution to reduce its abundance and spread. Field surveys for foliar fungal pathogens of <i>P. foetida s.l.</i> were performed between 2017 and 2020 in Colombia. Molecular sequencing was used to confirm the identity of plants surveyed at each site and to explore genetic variation between sites. Leaf spots of various sizes and sometime associated with chlorosis as well as necrosis of leaf edges were the main disease symptoms observed. These symptoms were not severe and did not appear to affect plant growth. No disease symptoms caused by obligate biotrophic fungi nor girdling lesions on stems were observed. Of the 125 fungal isolates recovered from the collected diseased material, only 21 were considered as pathogenic on <i>P. foetida s.l.</i> in detached-leaf assays. Morphological examinations and sequencing of the 21 pathogenic isolates revealed that they belong to 11 genera. Based on the low severity of disease symptoms observed in the field, we conclude that these isolates do not warrant further investigations as potential CBC agents.
DOI: 10.6084/m9.figshare.26362456
title: TRP, Calcium channels, and Cannabinoid Receptors in oral cancer cells

description: TRPV1, TRPA1, Cav channels, Cannabinoid receptors- qPCR data of SCC4, SCC9, SCC25, CAL27, and OKF6 cells
DOI: 10.6084/m9.figshare.26362456.v1
title: TRP, Calcium channels, and Cannabinoid Receptors in oral cancer cells

description: TRPV1, TRPA1, Cav channels, Cannabinoid receptors- qPCR data of SCC4, SCC9, SCC25, CAL27, and OKF6 cells
DOI: 10.6084/m9.figshare.26362462
title: Processed Expression Matrix in PPP article

description: scRNA dataset of "<b>Neutrophil-derived OSM fuels JAK-STAT3 signaling in keratinocytes in palmoplantar pustulosis patients: From single-cell sequencing to targeted therapy"</b>
DOI: 10.6084/m9.figshare.26362462.v1
title: Processed Expression Matrix in PPP article

description: scRNA dataset of "<b>Neutrophil-derived OSM fuels JAK-STAT3 signaling in keratinocytes in palmoplantar pustulosis patients: From single-cell sequencing to targeted therapy"</b>
DOI: 10.15468/dl.665wtz
title: Occurrence Download

description: A dataset containing 7507 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Finland",
 "OccurrenceStatus is Absent",
 "TaxonKey is Oxalis acetosella L.",
 "Year 2000-2024"
 ]
}

 The dataset includes 7507 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0034570-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.