cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18419/darus-2777
title: Replication data of Lotsch group for: "Direct and Linker-Exchange Alcohol-Assisted Hydrothermal Synthesis of Imide-Linked Covalent Organic Frameworks"

description: Covalent organic frameworks (COFs) are an extensively studied class of porous materials, which distinguish themselves from other porous polymers in their crystallinity and high degree of modularity, enabling a wide range of applications. However, the established synthetic protocols for the synthesis of stable and crystalline COFs, such as imide-linked COFs, often requires the use of high boiling solvents and toxic catalysts, making their synthesis expensive and environmentally harmful. Herein, we report a new environmentally friendly strategy - an alcohol-assisted hydrothermal polymerization approach (aaHTP) for the synthesis of a wide range of crystalline and porous imide-linked COFs. This method allows us to gain access to new COFs and to avoid toxic solvents by up to 90% through substituting commonly used organic solvent mixtures with water and small amounts of n-alcohols without being restricted to water-soluble linker molecules. Additionally, we use the aaHTP to demonstrate an eco-friendly COF-to-COF transformation of an imine-linked COF into a novel imide-linked COF via linkage replacement, inaccessible using published reaction conditions. This dataset contains all data from analytical measurements including FT-IR spectra (*.csv), raw XRRD patterns (*.xyd), 1H, 13C, 15N NMR spectra (*.csv), Ar sorption isotherms (*.txt), TEM images (*.tif), and simulated COF structure files (*.cif) mentioned under the related publication. The data from each anaytical measurement is summarized in a folder named with the measurement.
DOI: 10.6084/m9.figshare.23822190
title: European blackbirds fledglings survival

description: Data set contain resighting over 1000 European blackbirds fledglings. In all known casses the data concerning parents, broods and weather condition were stated.
DOI: 10.6084/m9.figshare.23822190.v1
title: European blackbirds fledglings survival

description: Data set contain resighting over 1000 European blackbirds fledglings. In all known casses the data concerning parents, broods and weather condition were stated.
DOI: 10.5281/zenodo.8208151
title: Toy dataset for DAPHNE

description: Toy dataset for DAPHNE Coming from: https://snap.stanford.edu/data/#amazon
DOI: 10.5281/zenodo.8208150
title: Toy dataset for DAPHNE

description: Toy dataset for DAPHNE Coming from: https://snap.stanford.edu/data/#amazon
DOI: 10.6084/m9.figshare.23818392
title: SB_raw data

description: The data support a systematic review of the experimental literature on decision making in sexual behavior. The files consist of 1) "readme" file outlining the data and replication of the searches 2) a csv file with a list of all papers returned by the search (i.e., the raw data) and 3) the data extraction table from the review.
DOI: 10.6084/m9.figshare.23818392.v1
title: SB_raw data

description: The data support a systematic review of the experimental literature on decision making in sexual behavior. The files consist of 1) "readme" file outlining the data and replication of the searches 2) a csv file with a list of all papers returned by the search (i.e., the raw data) and 3) the data extraction table from the review.
DOI: 10.5281/zenodo.8208157
title: carduelis_corsicana_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.8208156
title: carduelis_corsicana_zanfona_1.fasta.gz

description: .
DOI: 10.5281/zenodo.7027242
title: DynQual input example: Rhine basin

description: This repository contains all required input datasets for running the dynamical water quality routing model (DynQual) at 5 arc-min spatial resolution with a daily timestep for the Rhine basin. This input data is provided to provide users with a self-contained example for running DynQual, with the primary purpose of allowing users to increase their familiarity with the model setup. The model code (and user manual) that is also required for running this example setup are available at: https://github.com/UU-Hydro/DYNQUAL
DOI: 10.5281/zenodo.8203069
title: Squirrel-Cage Induction Motor Fault Diagnosis Dataset

description: The <strong>Squirrel Cage Induction Motor Fault Diagnosis Dataset</strong> is a multi-sensor data collection gathered to expand research on anomaly detection, fault diagnosis, and predictive maintenance, mainly using non-invasive methods such as thermal observation or vibration measurement. The measurements were gathered using an advanced <em>Wrocław University of Science and Technology</em> laboratory designed to simulate and study motor defects. The collected dataset is licensed under a <em>Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International</em> License. Available data: thermal images The example dataset utilization is presented in the GitHub repository: motor-fault-diagnosis Related publications: Unraveling Induction Motor State through Thermal Imaging and Edge Processing: A Step towards Explainable Fault Diagnosis
description: Currently, the presented, publicly available dataset consists of thermal images. In further releases related to the publication process, other sensor data (vibrations, current signal, sound) will be added to this repository.
description: {"references": ["Piechocki M, Pajchrowski T, Kraft M, Wolkiewicz M, Ewert P. Unraveling Induction Motor State through Thermal Imaging and Edge Processing: A Step towards Explainable Fault Diagnosis. Eksploatacja i Niezawodno\u015b\u0107 \u2013 Maintenance and Reliability. 2023;25(3). https://doi.org/10.17531/ein/170114"]}
DOI: 10.5281/zenodo.8203070
title: Squirrel-Cage Induction Motor Fault Diagnosis Dataset

description: The <strong>Squirrel Cage Induction Motor Fault Diagnosis Dataset</strong> is a multi-sensor data collection gathered to expand research on anomaly detection, fault diagnosis, and predictive maintenance, mainly using non-invasive methods such as thermal observation or vibration measurement. The measurements were gathered using an advanced <em>Wrocław University of Science and Technology</em> laboratory designed to simulate and study motor defects. The collected dataset is licensed under a <em>Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International</em> License. Available data: thermal images The example dataset utilization is presented in the GitHub repository: motor-fault-diagnosis Related publications: Unraveling Induction Motor State through Thermal Imaging and Edge Processing: A Step towards Explainable Fault Diagnosis
description: Currently, the presented, publicly available dataset consists of thermal images. In further releases related to the publication process, other sensor data (vibrations, current signal, sound) will be added to this repository.
description: {"references": ["Piechocki M, Pajchrowski T, Kraft M, Wolkiewicz M, Ewert P. Unraveling Induction Motor State through Thermal Imaging and Edge Processing: A Step towards Explainable Fault Diagnosis. Eksploatacja i Niezawodno\u015b\u0107 \u2013 Maintenance and Reliability. 2023;25(3). https://doi.org/10.17531/ein/170114"]}
DOI: 10.6084/m9.figshare.21611124
title: D1 - Reference databases used for blast queries

description: The databases with representaive sequences used as the blast queries when searching for plastid 16S, rbcL and psbA, and the host 18S.
DOI: 10.6084/m9.figshare.21611124.v1
title: D1 - Reference databases used for blast queries

description: The databases with representaive sequences used as the blast queries when searching for plastid 16S, rbcL and psbA, and the host 18S.
DOI: 10.6084/m9.figshare.21842523.v1
title: D2 - Phylogenetic trees - 28S, 18S, concat28S and 18S, 16S, rbcL & psbA

description: The files used to create the phylogenies for the Meringosphaera host 18S rDNA, plastid 16S rDNA, plastid rbcL and plastid psbA. <br> For each gene, there are 5 files: 1. A fasta file with the identified SAG copies and references Eukaryote sequences. The name of the file ends with ".fasta" 2. The Mafft alignment file of these sequences, file name ends with ".Mafft-auto.fa" 3. The alignment file after trimming with trimAI, file name ends with "trimAI-gappy.fa" 4. The log file of the IQtree process ("IQtree.log") 5. The resulting IQ tree treefile (".IQtree.tre") <br> For the concatenated 28S and 18S the sequences are in a mase file, and then the tree file is presented. For the 28S alone, the fasta file (extracted from the adove mase file but having applied the relevant mask) is presented alongside the tree file. <br> Also contains the figure (D2.1 Separate phylogenies of the 18S and 28S rDNA sequences.png), which includes its own legend.
DOI: 10.6084/m9.figshare.21842523
title: D2 - Phylogenetic trees - 28S, 18S, concat28S and 18S, 16S, rbcL & psbA

description: The files used to create the phylogenies for the Meringosphaera host 18S rDNA, plastid 16S rDNA, plastid rbcL and plastid psbA. <br> For each gene, there are 5 files: 1. A fasta file with the identified SAG copies and references Eukaryote sequences. The name of the file ends with ".fasta" 2. The Mafft alignment file of these sequences, file name ends with ".Mafft-auto.fa" 3. The alignment file after trimming with trimAI, file name ends with "trimAI-gappy.fa" 4. The log file of the IQtree process ("IQtree.log") 5. The resulting IQ tree treefile (".IQtree.tre") <br> For the concatenated 28S and 18S the sequences are in a mase file, and then the tree file is presented. For the 28S alone, the fasta file (extracted from the adove mase file but having applied the relevant mask) is presented alongside the tree file. <br> Also contains the figure (D2.1 Separate phylogenies of the 18S and 28S rDNA sequences.png), which includes its own legend.
DOI: 10.6084/m9.figshare.21623790
title: D3 - Assembled SAGs

description: Reads were assembled into contigs using Spades. These are the resulting 15 SAGs contig fasta files.
DOI: 10.6084/m9.figshare.21623790.v1
title: D3 - Assembled SAGs

description: Reads were assembled into contigs using Spades. These are the resulting 15 SAGs contig fasta files.
DOI: 10.6084/m9.figshare.21623802
title: D4 - Coassemblies

description: The samples were clustered by &gt;99% 18S rDNA identity, leading to three clusters that corresponded to the 18S groups 1, 2a and 2b. The reads belonging to each cluster were co-assembled with Spades to form COSAG 1, COSAG 2a and COSAG 2b. The contigs fasta files are included here. <br> Prodigal was used to predict the ORFs and amino acid sequence. The protein fasta and gff3 files are included.
DOI: 10.6084/m9.figshare.21632360
title: D5 - Host-encoded plastid-associated proteins - Sequences

description: The candidate host-encoded plastid-associated proteins. Contains 1 file with all candidates ('candidate_proteins.fasta'), and then the whole contigs that contain each candidates, these files are named by the coassembly (c1 = COSAG 1, c2a = COSAG 2a & c2b = COSAG 2b) and the node number of the contig. <br>
DOI: 10.6084/m9.figshare.21632360.v1
title: D5 - Host-encoded plastid-associated proteins - Sequences

description: The candidate host-encoded plastid-associated proteins. Contains 1 file with all candidates ('candidate_proteins.fasta'), and then the whole contigs that contain each candidates, these files are named by the coassembly (c1 = COSAG 1, c2a = COSAG 2a & c2b = COSAG 2b) and the node number of the contig. <br>
DOI: 10.6084/m9.figshare.21829152.v1
title: D6 - Host-encoded plastid-associated proteins - Candidate trees

description: For each candidate, there are 3 files: 1) A fasta file of the candidate and the top hits from database searches (top 20 hits from blastp_nr mode, blastp_tsa_nr mode and SequenceServer 2.0.0 with the EukProt V3 database) 2) The alignment file of hits fasta file, having been aligned with MAFFT and trimmed with trimAL 3) The phylogenetic tree predicted by IQ-TREE for the alignment file (Used with ModelFInder to determine the best-fit model, 1000 ultrafast bootstrap replicates, and SH-aLRT test) <br> Each file name has the name of the protein, the co-assembly the candidate comes from, the node identifier, and protein number (multiple protein numbers are present when manual curation was required to rejoin exons)
DOI: 10.6084/m9.figshare.21829152
title: D6 - Host-encoded plastid-associated proteins - Candidate trees

description: For each candidate, there are 3 files: 1) A fasta file of the candidate and the top hits from database searches (top 20 hits from blastp_nr mode, blastp_tsa_nr mode and SequenceServer 2.0.0 with the EukProt V3 database) 2) The alignment file of hits fasta file, having been aligned with MAFFT and trimmed with trimAL 3) The phylogenetic tree predicted by IQ-TREE for the alignment file (Used with ModelFInder to determine the best-fit model, 1000 ultrafast bootstrap replicates, and SH-aLRT test) <br> Each file name has the name of the protein, the co-assembly the candidate comes from, the node identifier, and protein number (multiple protein numbers are present when manual curation was required to rejoin exons)
DOI: 10.6084/m9.figshare.21806808
title: D3 - Meringosphaera plastid sequences

description: The plastid sequences identified from each SAG. For S2, S3, S4, S6, S8 & S14 a complete, circular plastid genome was assemblied. These genomes are also avaliable on genbank, and their accession numbers are included in the files. For these complete plastids, there is an overview comparing the gene content between the complete plastids and the Dictyochophyceae plastid genomes. <br> For S1, S7, S11, S12, S15 incomplete and fragmented plastid genomes were found, and files containing all the fragments per SAG are included. <br> For S5, S9, S10 & S13 no plastid sequences were found.
DOI: 10.6084/m9.figshare.21806808.v1
title: D3 - Meringosphaera plastid sequences

description: The plastid sequences identified from each SAG. For S2, S3, S4, S6, S8 & S14 a complete, circular plastid genome was assemblied. These genomes are also avaliable on genbank, and their accession numbers are included in the files. For these complete plastids, there is an overview comparing the gene content between the complete plastids and the Dictyochophyceae plastid genomes. <br> For S1, S7, S11, S12, S15 incomplete and fragmented plastid genomes were found, and files containing all the fragments per SAG are included. <br> For S5, S9, S10 & S13 no plastid sequences were found.
DOI: 10.6084/m9.figshare.23575917
title: GRAPE dataset: ROI images

description: The “ROI images” file contains 631 ROI of CFPs cropped from the original images, and the naming of them is consistent with that of original images.
DOI: 10.6084/m9.figshare.23575926
title: GRAPE dataset: CFPs

description: The folder “CFPs” contains 631 original CFPs from non-mydriatic digital camera, with personal information hidden. These images are named as “subject number_laterality_visit number. jpg”, corresponding to the records in Excel file.
DOI: 10.6084/m9.figshare.23575929
title: GRAPE dataset: Anotated Images

description: There are 631 ROI images with OD/OC segmentation in the subfolder “Annotated Images”. The green contour is for OD and red for OC, respectively. And the naming is consistent with the original image and ROI, as well.
DOI: 10.6084/m9.figshare.21829755
title: D7 - Host-encoded plastid-associated proteins - Identity of the contigs

description: To check the identity of the contigs containing the canidates, the up and down stream protein identities were investigated (so these files do not contain the candidates themselves). <br> For each protein, there are 5 files: 1) A fasta file of the protien and its top hits from database searches (top 20 hits from blastp_nr mode, blastp_tsa_nr mode and SequenceServer 2.0.0 with the EukProt V3 database) 2) The alignment file of hits fasta file, having been aligned with MAFFT 3) The trimmed alignment after trimAL was applied 4) The phylogenetic tree predicted by IQ-TREE for the alignment file (Used with ModelFInder to determine the best-fit model, 1000 ultrafast bootstrap replicates, and SH-aLRT test) 5)The log file from running IQtree <br> Each file name has the name of the protein, the co-assembly the candidate comes from, the node identifier, and the protein number (multiple protein numbers are present when manual curation was required to rejoin exons). The proteins per contig are held together in one subfolder.
DOI: 10.6084/m9.figshare.21829755.v1
title: D7 - Host-encoded plastid-associated proteins - Identity of the contigs

description: To check the identity of the contigs containing the canidates, the up and down stream protein identities were investigated (so these files do not contain the candidates themselves). <br> For each protein, there are 5 files: 1) A fasta file of the protien and its top hits from database searches (top 20 hits from blastp_nr mode, blastp_tsa_nr mode and SequenceServer 2.0.0 with the EukProt V3 database) 2) The alignment file of hits fasta file, having been aligned with MAFFT 3) The trimmed alignment after trimAL was applied 4) The phylogenetic tree predicted by IQ-TREE for the alignment file (Used with ModelFInder to determine the best-fit model, 1000 ultrafast bootstrap replicates, and SH-aLRT test) 5)The log file from running IQtree <br> Each file name has the name of the protein, the co-assembly the candidate comes from, the node identifier, and the protein number (multiple protein numbers are present when manual curation was required to rejoin exons). The proteins per contig are held together in one subfolder.
DOI: 10.6084/m9.figshare.23575920
title: GRAPE dataset: draw.py

description: Running the codes in the “draw.py” can draw the segmentation annotations on ROI of CFPs, and the results will be output in the folder “Annotated Images”.
DOI: 10.6084/m9.figshare.23575932
title: GRAPE dataset: json files

description: The “json” file contains 631 original annotation files in JSON format, that record the XY coordinates. The naming method is consistent with the images, in the format “subject number_laterality_visit number. json”. The JSON file can be opened using Notebook and some label tool software.
DOI: 10.6084/m9.figshare.23674350
title: GRAPE dataset: VF and clinical information.xlsx

description: The Excel file, “VF and clinical information”, contains 2 sheets, titled “Baseline” and “Follow-up”. There are 263 records representing 263 eyes and 80 columns in sheet “Baseline”, the last 61 columns of which are “VF”. These columns are in turn: “Subject Number” (inclusion subjects numbered as 1-144), “Laterality” (OD for right eye and OS for left eye), “Age”, “Gender” (M for male and F for female), “IOP”, “CCT”, “Total Visits” (the total times of visits for each eye), “Progression Status-PLR2” (progression status defined by PLR2 method, 0 for non-progression and 1 for progression), “Progression Status-PLR3” (progression status defined by PLR3 method, 0 for non-progression and 1 for progression), “Progression Status- MD” (progression status defined by MD method, 0 for non-progression and 1 for progression), “Category of Glaucoma” (OAG for open-angle glaucoma and ACG for angle-closure glaucoma), “OCT RNFL thickness” (“Mean” for total mean RNFL peripapillary thickness, “S” for superior, “N” for nasal, “I” for inferior, and “T” for temporal), “Corresponding CFP” (named as “subject number_laterality_visit number. jpg”), “Acquisition Device” (the device that taking the corresponding CFP), “Resolution” (the resolution of the corresponding CFP) and “VF” (the last 61 columns). Besides, there are 1115 records representing 1115 visits and 69 columns in sheet “Follow-up”, the last 61 columns of which are “VF” as well. These columns are in turn: “Subject Number”, “Laterality”, “Visit Number” (the times for follow-up visit from baseline), “Interval Years” (the interval years for follow-up visit from baseline), “IOP”, “Corresponding CFP”, “Acquisition Device”, “Resolution” and “VF”. The symbol “/” in the sheet represents that no corresponding CFP or OCT examination were generated in this visit.
DOI: 10.6084/m9.figshare.21842574
title: D8 - qPCR results

description: CSV file with the qPCR results. The data shown has been averaged over the technical replicates, but each biological replicate is included. The abundance was calculated from the mean cycle threshold (Ct) which was then quantified into abundance (gene copy number) using the standard curve. <br> If the target could not be detected in all of the technical replicates the sample was marked as detected but not quantifiable and was given a value of '1.1' in order that the data could be plotted. <br> The columns of the file include the following information: 'Time' shows the month and year the sample was collected. 'Location' indicates the location. "Bio_rep" is the biological replicate. 'Filter' records the filter pore size in μm (all filters tested here were 5μm). 'Abundance' is the calculated abundance. 'N' shows the number of technical replicates that the abundance was averaged across. 'Sd' is the standard deviation in the technical replicates 'se' is the standard error across the technical replicates 'Target' shows the target of the primer and probes, includes the gene and group. 'Partner' shows whether the target was host or plastid.
DOI: 10.6084/m9.figshare.23815971
title: blue shark occurrences, oceanographic data, and SDM R code for predicting seasonal distributions in the cold and warm seasons in the Indo-Western Pacific

description: This file includes original datasets for predicting blue sharks' seasonal distributions across the Indo-Western Pacific Ocean based on open-access data and advanced ensemble SDMs. They were used in a manuscript that will be published later.
DOI: 10.5281/zenodo.8097014
title: Data and data analysis for "Human Preferences for the Visual Appearance of Desks: Examining the Role of Wooden Materials and Desk Designs"

description: Data and data analysis for the article "Human Preferences for the Visual Appearance of Desks: Examining the Role of Wooden Materials and Desk Designs".
DOI: 10.5281/zenodo.8097015
title: Data and data analysis for "Human Preferences for the Visual Appearance of Desks: Examining the Role of Wooden Materials and Desk Designs"

description: Data and data analysis for the article "Human Preferences for the Visual Appearance of Desks: Examining the Role of Wooden Materials and Desk Designs".
DOI: 10.15161/oar.it/76905
title: IBA analyses on ancient glass from Sarmizegetusa Regia, Romania (1st c. AD) (Metadata RADIATE TA Proposal 20002031-ST)

description: Proposal title "IBA analyses on ancient glass from Sarmizegetusa Regia, Romania (1st c. AD)". Measurements carried out at the external beam set-up for cultural heritage of the INFN LABEC accelerator laboratory, from 7 till 10 November 2022. Hands-on mode. A 3 MeV proton beam was extracted through a Si3N4 window into ambient pressure. Two SDD detectors were used for the measurement of characteristic X rays and a HPGe detector was employed for the quantitative analysis of the prompt gamma rays emitted by 23 Na nuclei. The PIXE-PIGE measurements were performed on 38 glass fragments discovered at Sarmizegetusa, Hunedoara county, Romania and on 45 glass items unearthed at Poiana, Galaţi county, Romania. The archaeological vessel fragments were loosely dated to 1st c. AD They were excavated in two Geto Dacian archaeological sites of high relevance for the historians. <br> Most of the measurements were made on tiny areas polished with SiC paper before the experiment, to ensure the determination of the pristine glass composition. Additional measurements were performed on some fresh surfaces, as some shards broke unwillingly<br> during the excavations. Some samples exhibited painted decorations or they were made of glass of various colours, hence more spectra. Several certified reference materials (glass standards NIST 610, NIST 1412 and BCR 126A) were measured as well, to assess the accuracy of the results.