cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/33cngpcrmx
title: Dataset on irrigation for Tomato

description: This dataset is collected through real-time sensors to develop an automated underground drip irrigation system based on the Edge Internet of Things (IoT). Sensors used for collecting data include the BME280 temperature, humidity, and pressure sensors. Soil moisture value is measured through the capacitive SEN0193 soil moisture sensor. A 5-volt RS485 NPK sensor measures the N, P, and K values in mg/kg. A real-time API measures wind speed and solar radiation value based on the longitude and latitude of the farming field. Real-time data is collected in JavaScript Object Notation (JSON) and converted to CSV. Research in this study uses real-time data to test and analyze the automation of drip underground irrigation for tomato crops. The CSV format data are preprocessed and normalized to train the data for scheduling drip underground irrigation and predicting soil health status through an artificial intelligence approach. Several smart precision farming analysis methods for tomato crops can be applied using this data. For example, estimating total water demand and predicting soil and NPK fertilizer.
DOI: 10.17632/hx8kcpxh84
title: Equivariant graph convolutional neural network for predicting tensors of atomic Born effective charges (Equivar). Pertrained models and scripts, and datasets of ab initio tensors of atomic Born effective charges of perovskites, Li3PO4, and ZrO2

description: This archive contains model weights, python scripts, and data for the paper "Representing Born effective charges with equivariant graph convolutional neural networks." The equivariant graph convolutional neural network model (Equivar) performs the regression of tensors of atomic Born effective charges from the crystal structure. 

The weights are for the two pretrained Equivar models, BM1, and BM2. The included python scripts can be used for performing the regression of tensors of atomic Born effective charges using these models. The scripts can also be downloaded from https://github.com/equivar/equivar_eval/. Here, version v0.2.2 (a396545) is used.

The accompanying dataset was used for model training. The dataset contains tensors of Born effective charges of perovskite oxides, Li3PO4, and ZrO2, calculated from first principles using density functional perturbation theory (DFPT). The dataset is in the extended xyz format.
DOI: 10.17632/zg43ssj3d6
title: Constructing a Fish’s Complete Thermal Tolerance Polygon: Effective Practices for Polygon Experiments using Mottled Catfish Corydoras paleatus

description: Critical Thermal Methodology (CTM) and Chronic Lethal Methodology (CLM) experiments were utilized to construct a complete thermal tolerance polygon for the South American fish species, Mottled catfish (Corydoras paleatus). Mottled catfish showed Chronic Lethal Maximum (CLMax) of 34.9±0.52°C and Chronic Lethal Minimum (CLMin) of 3.8±0.08°C. Fish were chronically acclimated (~2 weeks) to 6 temperatures ranging from 7.2±0.05°C →32.2±0.16°C (7°C, 12°C, 17°C, 22°C, 27°C, and 32°C), and CTM used to estimate upper and lower acute temperature tolerance. Linear regression of Critical Thermal Maximum (CTMax) and Minimum (CTMin) data with each acclimation temperature were used along with CLMax and CLMin to create a complete thermal tolerance polygon. The highest CTMax was 38.4 ±0.60°C for fish acclimated to 32.2±0.16°C, and the lowest CTMin was 3.36±1.84°C for fish acclimated to 7.2±0.05°C. Mottled catfish have a polygon measuring 785.7°C2, and the slope of the linear regressions showed the species gained 0.55°C and 0.32°C of upper and lower tolerance, respectively. We compared slopes of CTMax or CTMin regression lines to each other using a set of comparisons between 3, 4, 5, or 6 acclimation temperatures. Our data demonstrated that 3 acclimation temperatures were as sufficient as 4→6 to pair with estimates of chronic upper and lower thermal limits for accurately determining a complete thermal tolerance polygon.
DOI: 10.6084/m9.figshare.25976434.v4
title: Supplementary Data for "<b>Mapper: fast and accurate sequence alignment via gapped x-mers</b>"

description: Evaluation Results:Suboptimal alignment rates:The folder "alignment_accuracy/" and "alignment_accuracy_ANI" contains the following:Alignment results for the same read compared across different aligners. Files ending with <code>withtag.txt</code> represent all alignment results, while files ending with <code>withtagclean.txt</code> exclude middle soft clips reported by BWA and Minimap2.A summary of suboptimal alignment rates.Potential causes of suboptimal alignments.Code to visualize the results (Figures 4, 5, S1, and S3) is available at https://github.com/caozhichongchong/Mapper_eva (Alignment_accuracy.ipynb and Alignment_accuracy_ANI.ipynb)Alignment inconsistency rate:The folder "alignment_consistency/" contains a summary of alignment inconsistency rates and suboptimal alignment rates.Code to visualize the results (Figures 6 and S4) is available at https://github.com/caozhichongchong/Mapper_eva (Alignment_consistency.ipynb)Speed:The folder "speed_evaluation" contains runtime and memory usage data for all aligners during library indexing and read alignment.Code to visualize the results (Figures 7, S5. and S6) can be found at https://github.com/caozhichongchong/Mapper_eva (Alignment_accuracy.ipynb)Alignment example for Figure S2: The folder "alignment_example" contains the code and SAM files supporting the alignment results for an example read shown in Figure S2.<br>
DOI: 10.6084/m9.figshare.5128126.v1
title: Supplementary Material for: Novel Mutation and Structural RNA Analysis of the Noncoding RNase <b><i>MRP</i></b> Gene in Cartilage-Hair Hypoplasia

description: Cartilage-hair hypoplasia (CHH) is an autosomal recessive disorder which is characterized by bone metaphysis anomalies with manifestations that include short stature, defective cellular immunity, and predisposition to several cancers. It is caused by mutations in <i>RMRP</i>, which is transcribed as an RNA component of the mitochondrial RNA-processing ribonuclease. We report the clinical and molecular data of a Moroccan patient with CHH. Sequencing of <i>RMRP</i> identified 2 mutations in the patient: the known mutation g.97G&gt;A and the variation g.27G&gt;C, which has not been reported previously. Given the high mutational heterogeneity, the high frequency of variations in the region, and the fact that <i>RMRP</i> is a non-coding gene, assigning the pathogenicity to <i>RMRP</i> mutations remains a difficult task. Therefore, we compared the characteristics of the primary and secondary structures of mutated RMRP sequences. The location of our mutations within the secondary structure of the RMRP molecule revealed that the novel g.27G&gt;C mutation causes a disruption in the Watson-Crick base pairing, which results in an impairment of a highly conserved P3 domain. Our work prompts considering the consequences of novel <i>RMRP</i> nucleotide variations on conserved RNA structures to gain insights into the pathogenicity of mutations.
DOI: 10.17632/gx4nnk3bv3
title: Supplement - Ryan et al - JAAD

description: Supplemental methods and results for: Ryan C, Puig L, Zema C, Thompson EHZ, Yang M, Wu E, Bensimon A, Huang X, Joshi AD, Elewski B. The impact of achieving and maintaining near-complete or complete skin clearance on patient quality of life in moderate-to-severe psoriasis. Journal of the American Academy of Dermatology.
DOI: 10.6084/m9.figshare.1136081_d267
title: Ex13R51 DAPI-3 from Synaptic molecular imaging in spared and deprived columns of mouse barrel cortex with array tomography.

description: This data represents repeated immunohistochemical staining and stripping (elution) cycles of an array tomography tissue ribbon from mouse barrel cortex following chessboard deprivation. Included are images from consecutive 70 nm serial sections aligned to produce a high-resolution volumetric reconstruction of a given antibody stain.
DOI: 10.6084/m9.figshare.20279856.v1
title: Output gffcompare file using gtf files of reference transcriptome and gene model

description: Output gffcompare file using gtf files of reference transcriptome and gene model
DOI: 10.6084/m9.figshare.28349096.v3
title: Ancestries of American Persimmon cultivars documentation

description: Supporting data and tables of results for "Assimilated ancestries of American persimmons", 2025.American persimmons source data -- input data records in xlsx format.clayp.xls -- breeding records of J. Claypool assimilated by J. LehmanStory of James Claypool -- an overview of J. Claypool breeding by J. LehmanLNLA Newsletter -- contains article by Jim Foret about Gehron persimmonJ. Lehman breeding records from NAFEX -- post from J. Lehman in NAFEX newsletterFarmer's Bulletin 685 -- a complete propagation and growing guide, plus cultivarsGordon 2011 - Nut Growing Ontario Style -- pamphlet from NAFEX and NNGAGoodell 1982 - Two Promising Fruit Plants for Northern Landscapes -- journal articleMcDaniel 1980 - A Plant Breeder Looks at Some American Tree Crops -- conference proceedingsRaymond 2006 -The horticultural improvement of the American Persimmon -- articleAmerican persimmons cultivars selected sellers.xlsxAmerican persimmons breeding references.xlsxAmerican persimmons tabularized ancestry.xlsxAmerican persimmons not in circulation.xlsxAmerican persimmons ancestry origins.xlsxAmerican persimmons feral or wild table.xlsxAmerican persimmons unknown ancestry table.xlsxAmerican persimmons duplicate names.xlsxAmerican persimmons suspected origins.xlsxAmerican persimmons cultivars ploidy.xlsxAmerican persimmons cultivars without Early Golden ancestry.xlsx<br>
DOI: 10.6084/m9.figshare.28688051.v1
title: Dataset - Identification of ischemic stroke patients based on plasma concentrations of extracellular vesicles

description: Flow cytometry experiments were performed to determine the plasma concentration of extracellular vesicle (EV) subtypes in patients with and without ischemic stroke. <br>Datafiles can be shared upon request.
DOI: 10.6084/m9.figshare.29133431.v1
title: LFP-defined RF remapping

description: LFP-defined RF remapping
DOI: 10.6084/m9.figshare.5792277.v1
title: TEACHING MODEL FOR EVALUATION OF THE ABILITY AND COMPETENCE PROGRESS IN ENDOSUTURE IN SURGICAL SKILL LABORATORY

description: ABSTRACT Background : Laparoscopic manual suturing is probably the most difficult skill to be acquired in minimally invasive surgery. However, laparoscopic exercise endo-sutures can be learned with a simulator and are of great practical importance and clinical applicability, absorbing concepts that are immediately transferred to the operating room. Aim : To assess the progression of skills competence in endo-sutures through realistic simulation model of systematized education. Method : Evaluation of the progression of competence of students in three sequential stages of training in realistic simulation, pre-test (V.1), teaching concepts (V.2) and training station for absorption of video concepts in surgery - ergonomics, stereotaxia, ambidexterity, haptic touch, fucral effect, applied in the manufacture of points corresponding to a Nissen fundoplication, in endo-suture for realistic simulation. Results : All students who attended the course absorbed the video concepts in surgery; most participants showed steady and continued improvement and during the stages of training, obtained progression of appropriate skills, defining competence and validation of the teaching model to achieve proficiency. Conclusions : The teaching model was adequate, safe, revealed the profile of the student, the evolutionary powers of the endo-sutures performance and critical analysis of the training to achieve proficiency in bariatric procedures.
DOI: 10.6084/m9.figshare.12153483.v1
title: Brazilian_municipalities_2005_2012

description: 476 Brazilian municipalities from 2005 to 2012. The variables description is:<br>Variable Description SourceExp Current expenditure, reflecting the demand for public goods. STN/FinbraExpinv Investment expenditure. STN/FinbraGDP Gross Domestic Product of municipalities at current prices. IBGEGrant Unconditional lump sum transfers, represented by the sum of federal transfers FPM and IOF (Financial Transactions Tax on gold); and state transfers ICMS (Tax on Circulation of Goods and Services) and IPVA (Real Estate Tax), all them deducted by the Fundeb amount, except IOF, which is not deducted by Fundeb**. STN/FinbraFPM Municipal Participation Fund (FPM), deducted by the Fundeb amount. STN/FinbraIFDMincome Municipal Development Firjan Index (IFDM) area of employment and income. FirjanIFDMedu Municipal Development Firjan Index (IFDM) area of education. FirjanIFDMhealth Municipal Development Firjan Index (IFDM) area of health. FirjanGender Percentage of women in the total population. DatasusYouth Percentage of individuals aged up to 14 years in the total population. DatasusElderly Percentage of individuals over the age of 60 in the total population. DatasusAligFM Dummy equals 1 if the coalition (or party) of the federal president and the municipality mayor are the same. TSE AligSM Dummy equals 1 if the coalition (or party) of the state governor and the municipality mayor are the same. TSE AligFMSM Dummy equals 1 if the coalition (or party) of the federal president and the municipality mayor are the same.Dummy equals 1 if the mayor's and president's party (or coalition) are the same. TSE Year election Years of municipalitie’s election: 2008 and 2012. Federal Constitution.Index1 Tax Revenue ÷ Total Revenue STN/FinbraIndex2 Tax Revenue ÷ Current Revenue STN/FinbraIndex3 Tax Revenue ÷ Total Expenditure STN/FinbraIndex4 Tax Revenue ÷ Current Expenditure STN/FinbraIndex5 (Taxes ISS+IPTU+IPVA) ÷ Total Revenue STN/FinbraIndex6 Taxes ÷ Total Revenue STN/Finbra<br>
DOI: 10.6084/m9.figshare.12666497.v1
title: E. coli BIGSI index

description: A BIGSI index of the E. coli collection which can be used to easily and quickly query the genomes for any DNA sequence of 61 bp or longer <br>BIGSI uses a k-mer based approach to query any DNA sequence of 61 bp or greater against all the assemblies of the collection (Bradley et al. 2019). This can be achieved as follows:<br>bigsi search -c config_10K_00.yaml -t 0.8ATGAAAAACACAATACATATCAACTTCGCTATTTTTTTAATAATTGCAAATATTATCTACA<br>Where config_10K_00.yaml provides the config file to the BIGSI index of the assemblies, and 0.8 is the threshold in k-mer similarity used to defined a match, and “ATGAAAAACACAATACATATCAACTTCGCTATTTTTTTAATAATTGCAAATATTATCTACA” is the sequence being search. BIGSI will return all the genome identifiers in the collection that have this sequence in at least 80% k-mer similarity. The properties of these genomes can be investigated in File F1. The user will need to ensure the path to the index is correct (“filename:”) in the config_10K_00.yaml file. Please refer to the BIGSI documentation (https://github.com/iqbal-lab-org/BIGSI) for full details.<br>
DOI: 10.6084/m9.figshare.28826519.v1
title: Data of PJ experiments on SPSS

description: Although prior research has widely analyzed Peace Journalism's (PJ) application in media coverage, limited attention has been paid to its effect on audiences. This study addresses this gap through three experiments that recruited 317 Taiwanese university students. Each experiment used a between-subjects design to compare participants' responses to PJ- versus War Journalism (WJ)-framed news stories (IVs) on three conflicts: Bahrain’s uprising, Syria’s war, and the China-Taiwan conflict. Responses were measured using a designed propaganda-narrative scale (DV). The results showed that exposure to PJ reduced acceptance of propaganda narratives. Also, political attitudes—but not prior knowledge—moderated the PJ effect in the Taiwan-focused experiment.
DOI: 10.17632/mttsvrbs78
title: Students’ experiences and parents’ perception of online classes, cyber abuse, and online sexual harassment.

description: This data was compiled using information from 2105 students and 1400 parents. The questionnaire (in English and Tamil) assessed the effectiveness of online classes, cyberbullying, and online sexual harassment as experienced by college students and perceived by their parents. The survey employed an online questionnaire to assess socio-demographic information (3 items), the effectiveness of online classes (5 items), online abuse (9 items), and online sexual harassment (5 items).
DOI: 10.17632/sn39mbyngb
title: Data for sound pressure level prediction

description: The data file “Data for calculation.xlsx” contains all numerical values which are necessary for the prediction calculation of the sound pressure level caused by the structure-borne sound sources. The provided values were measured in small frequency bands as well as third-octave bands. To determine the source parameters, the raw data were measured exclusively in small frequency bands in order to calculate the source parameters from these values.
DOI: 10.6084/m9.figshare.1085960.v1
title: Killer whales of the Crozet islands, photo-identification catalogue 2003-2011

description: Photo-identification catalogue of the frequently encountered killer whales off the Crozet islands between 2003-2011.
DOI: 10.6084/m9.figshare.14079866.v5
title: Data file 1 - Methods

description: Methodology description
DOI: 10.6084/m9.figshare.27651468.v2
title: A dataset of UAV Imagery for Temperate Savanna in Northeastern China

description: The UAV imagery consists of 75 TIFF files. Additionally, the spatial resolution of some larger images has been downscaled to 5 cm/pixel. To label the geographic location of each sample plot, the shapefile with the file name of plots is also provided. It contains attribute information including the plot name (plot_name), the year of imagery collection (Img_year), and fields that identify the purpose of the imagery—whether it is used for model training and validation (For_model) or for temperate savanna validation (For_sav_val).
DOI: 10.17632/6kh5by43cx
title: Supplemental materials: Basal Hyperglycemia Contributes More Than Fifty Percent to Time in Range in Pregnant Women with Type 1 Diabetes

description: This is a study to evaluate the relative contribution of basal hyperglycemia (BHG) and postprandial hyperglycemia (PHG) to the time in range (TIR) categories in pregnant women with type 1 diabetes mellitus (T1DM). This observational study included pregnancies with T1DM from the CARNATION study who wore continuous glucose monitoring (CGM) devices during pregnancy. The data from CGM were analyzed for TIR (range, 3.5-7.8 mmol/L), areas under the curve (AUC) of PHG, AUC of BHG, and basal and postprandial hyperglycemia contribution rates. The contribution rates of BHG and PHG to the different levels of TIR(＜60%, 60-78%,≥78%) were analyzed. A total of 112 pregnant women with T1DM with 295 CGM-HbA1c profiles were enrolled in this study. The participants' average age was 28.8±3.9 years with a diabetes duration of 8.4±6.2 years. All women experienced a mean TIR of 75.6±19.0% and a mean HbA1c of 6.2±1.1% during pregnancy. The BHG contribution accounted for 74.9(36.8, 100)%, 69.2(13.4, 100)%, and 66.5(10.0, 100)% (P＜0.001) and PHG accounted for 25.1(0, 6.2)% and 30.8(0, 86.6)% and 33.6(0, 90.0)% (P＜0.001) when participants experienced the TIR＜60%, 60-78%,≥78%, respectively. In conclusion, basal hyperglycemia was the major contributor to TIR during pregnancy. Along with controlling the postprandial hyperglycemia, pregnant women with T1DM who did not reach the target of TIR may benefit more from the optimization of insulin regimens focusing on reducing basal glucose.
DOI: 10.17632/6p3dgbrptv
title: moment tensor solutions of events in the 2019 Ridgecrest, California, earthquake sequence

description: Data format of the moment tensor catalog Column Information 1. Longitude 2. Latitude 3. Depth 4. Mxx 5. Mxy 6. Mxz 7. Myy 8. Myz 9. Mzz 10. ** 11. Mc 12. DC(%) 13. CLVD(%) 14. ISO(%) 15. Event_info 16. Event_ID 17. Waveform misfit 18. Num_wf_segment 19. Source of earthquake location
DOI: 10.17632/fmfncxjz3v
title: Mango Dataset - Studio Setup

description: Mango disease detection, grading and classification experiments can be performed. For more detail, call +91 9586113399.
DOI: 10.17632/jc4df8srcb
title: Dataset Question Answering for Admission of Higher Education Institution

description: The data collection process commenced with web scraping of a selected higher education institution's website, collecting any data that relates to the admission topic of higher education institutions, during the period from July to September 2023. This resulted in a raw dataset primarily cantered around admission-related content. Subsequently, meticulous data cleaning and organization procedures were implemented to refine the dataset. The primary data, in its raw form before annotation into a question-and-answer format, was predominantly in the Indonesian language. Following this, a comprehensive annotation process was conducted to enrich the dataset with specific admission-related information, transforming it into secondary data. Both primary and secondary data predominantly remained in the Indonesian language. To enhance data quality, we added filters to remove or exclude: 1) data not in the Indonesian language, 2) data unrelated to the admission topic, and 3) redundant entries. This meticulous curation has culminated in the creation of a finalized dataset, meticulously prepared and now readily available for research and analysis in the domain of higher education admission.
DOI: 10.17632/v47nn9xbkr
title: Hydraulic variables for rectangular rill channels characterized by different roughness height
DOI: 10.6084/m9.figshare.13365191.v1
title: Basic Introductory Statistics for Radiation Oncologists

description: As part of the “Biostatistics and Evidence Appraisal for Radiation Oncologists”, an online seminar series is sponsored by the University of Cincinnati Department of Radiation Oncology and ROECSG (Radiation Oncology Education Collaborative Study Group https://voices.uchicago.edu/roecsg/), Dr. Clifton fuller presented exemplar data from the following publications of prospective trial performed under the auspices of the University of Texas MD Anderson Cancer Center (Trial No, 88-001):<br>-Peters LJ, Goepfert H, Ang KK, Byers RM, Maor MH, Guillamondegui O, Morrison WH, Weber RS, Garden AS, Frankenthaler RA, et al. E<i>valuation of the dose for postoperative radiation therapy of head and neck cancer: first report of a prospective randomized trial.</i> Int J Radiat Oncol Biol Phys. 1993 Apr 30;26(1):3-11. doi: 10.1016/0360-3016(93)90167-t. PMID: 8482629.<br>-Rosenthal DI, Mohamed ASR, Garden AS, Morrison WH, El-Naggar AK, Kamal M, Weber RS, Fuller CD, Peters LJ.<i> Final Report of a Prospective Randomized Trial to Evaluate the Dose-Response Relationship for Postoperative Radiation Therapy and Pathologic Risk Groups in Patients With Head and Neck Cancer.</i> Int J Radiat Oncol Biol Phys. 2017 Aug 1;98(5):1002-1011. doi: 10.1016/j.ijrobp.2017.02.218. Epub 2017 Jul 10. PMID: 28721881; PMCID: PMC5518636.<br>Data from these publications was anonymized (I.e. stripped of 45 CFR § 164.514- defined PHI identifiers); age values were “scrambled” in random order, such that they are not associated directly with the index patient case-data. The resultant dataset is presented as a .csv file for use for training and statistical instruction purposes.
DOI: 10.6084/m9.figshare.28937987.v1
title: HS17_H3K27Ac P48C814_norm.bigwig

description: test