cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.ffjej8
title: Occurrence Download

description: A dataset containing 4357 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Chatogekko amazonicus, Coleodactylus brachystoma, Coleodactylus elizae, Coleodactylus meridionalis, Coleodactylus natalensis, Coleodactylus septentrionalis, Pseudogonatodes gasconi, Psychosaura agmosticha, Psychosaura macrorhyncha, Trachylepis atlantica, Varzea altamazonica, Varzea bistriata, Norops auratus, Norops bombiceps)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 4357 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020557-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16754368
title: Data for 'Redistribution of Light Absorption by Chlorophyll Decline Delays Warming by up to a Decade'

description: This is the dataset for manuscript “Redistribution of Light Absorption by Chlorophyll Decline Delays Warming by up to a Decade”, which primarily contains solar radiation absorption within the ocean mixed layer based on CMIP6 model outputs. Explanations for each figure and the corresponding code are included. Details of the processing procedure can be found in the main text.
DOI: 10.5281/zenodo.16754369
title: Data for 'Redistribution of Light Absorption by Chlorophyll Decline Delays Warming by up to a Decade'

description: This is the dataset for manuscript “Redistribution of Light Absorption by Chlorophyll Decline Delays Warming by up to a Decade”, which primarily contains solar radiation absorption within the ocean mixed layer based on CMIP6 model outputs. Explanations for each figure and the corresponding code are included. Details of the processing procedure can be found in the main text.
DOI: 10.17632/5d4vh4bnv3.2
title: Implementação de estratégias para reduzir o risco de transmissão da COVID-19 em um hospital psiquiátrico e avaliação dos casos confirmados no período de 2020 a 2023

description: Implementação de estratégias para reduzir o risco de transmissão da COVID-19 em um hospital psiquiátrico e avaliação dos casos confirmados no período de 2020 a 2022
DOI: 10.17632/5jgm94b6th
title: Supporting data for Kim et al, J Clin Invest . 2023 Dec 15;133(24):e173160.

description: Supporting data for Kim et al, J Clin Invest . 2023 Dec 15;133(24):e173160.
DOI: 10.17632/5jgm94b6th.1
title: Supporting data for Kim et al, J Clin Invest . 2023 Dec 15;133(24):e173160.

description: Supporting data for Kim et al, J Clin Invest . 2023 Dec 15;133(24):e173160.
DOI: 10.17632/pyd9p7c2mv
title: The effects of proprioceptive neuromuscular facilitation (PNF) exercises with a biopsychosocial approach on pain, joint stiffness, kinesthesia, and kinesiophobia in athletes post-ACL reconstruction

description: Background: Following anterior cruciate ligament (ACL) reconstruction, joint stiffness and kinesiophobia pose significant challenges to rehabilitation in some patients.
Objective: This study investigated the effects of proprioceptive neuromuscular facilitation (PNF) exercises with a biopsychosocial approach on pain, joint stiffness, kinesthesia, and kinesiophobia in athletes post-ACL reconstruction.
Methods: The study included 24 athletes (12 men and 12 women) selected from 192 patients, 4 weeks post-arthroscopic ACL reconstruction, who still experienced pain, stiffness, and kinesiophobia despite standard care. Participants were purposively selected and randomly matched by gender and range of motion (ROM) into control (routine physiotherapy) and experimental (PNF with a biopsychosocial approach) groups. Outcome measures, including pain (KOOS questionnaire), knee ROM, kinesthesia, and kinesiophobia (Tampa Scale), were assessed before and after an 8-week intervention (3 weekly 45-minute sessions). Data were analyzed using repeated-measures ANOVA.
Results: Statistical analysis revealed significant improvements in the experimental group across all outcome measures (pain, stiffness, kinesthesia, and kinesiophobia) compared to the control group (F(1,22)&gt;22.3, P&lt;0.001, η²&gt;0.50).
Conclusion: PNF exercises with a biopsychosocial approach effectively reduced pain, stiffness, and kinesiophobia, making them a recommended method for post-ACL reconstruction rehabilitation.
Keywords: PNF exercises, biopsychosocial approach, knee stiffness, pain, kinesiophobia
DOI: 10.17632/pyd9p7c2mv.1
title: The effects of proprioceptive neuromuscular facilitation (PNF) exercises with a biopsychosocial approach on pain, joint stiffness, kinesthesia, and kinesiophobia in athletes post-ACL reconstruction

description: Background: Following anterior cruciate ligament (ACL) reconstruction, joint stiffness and kinesiophobia pose significant challenges to rehabilitation in some patients.
Objective: This study investigated the effects of proprioceptive neuromuscular facilitation (PNF) exercises with a biopsychosocial approach on pain, joint stiffness, kinesthesia, and kinesiophobia in athletes post-ACL reconstruction.
Methods: The study included 24 athletes (12 men and 12 women) selected from 192 patients, 4 weeks post-arthroscopic ACL reconstruction, who still experienced pain, stiffness, and kinesiophobia despite standard care. Participants were purposively selected and randomly matched by gender and range of motion (ROM) into control (routine physiotherapy) and experimental (PNF with a biopsychosocial approach) groups. Outcome measures, including pain (KOOS questionnaire), knee ROM, kinesthesia, and kinesiophobia (Tampa Scale), were assessed before and after an 8-week intervention (3 weekly 45-minute sessions). Data were analyzed using repeated-measures ANOVA.
Results: Statistical analysis revealed significant improvements in the experimental group across all outcome measures (pain, stiffness, kinesthesia, and kinesiophobia) compared to the control group (F(1,22)&gt;22.3, P&lt;0.001, η²&gt;0.50).
Conclusion: PNF exercises with a biopsychosocial approach effectively reduced pain, stiffness, and kinesiophobia, making them a recommended method for post-ACL reconstruction rehabilitation.
Keywords: PNF exercises, biopsychosocial approach, knee stiffness, pain, kinesiophobia
DOI: 10.17632/hch44fkr27
title: Yield Stress Measurements for Saline Red Blood Cell Suspensions

description: Image data at different pressure drops for saline red blood cell suspensions in a microfluidic channel. The blood cells used for this dataset are collected from horse. The intention of this data is to measure the yield stress. The channel is controlled by hydrostatic pressure head, therefore each folder is labelled with the volume removed from the outlet syringe. The volume is converted to pressure drop as,

0 uL = 0 Pa
115 uL = 2.59 Pa
230 uL = 5.19 Pa
345 uL = 7.78 Pa
460 uL = 10.4 Pa
575 uL = 13.0 Pa
1150 uL = 25.9 Pa
DOI: 10.17632/hch44fkr27.1
title: Yield Stress Measurements for Saline Red Blood Cell Suspensions

description: Image data at different pressure drops for saline red blood cell suspensions in a microfluidic channel. The blood cells used for this dataset are collected from horse. The intention of this data is to measure the yield stress. The channel is controlled by hydrostatic pressure head, therefore each folder is labelled with the volume removed from the outlet syringe. The volume is converted to pressure drop as,

0 uL = 0 Pa
115 uL = 2.59 Pa
230 uL = 5.19 Pa
345 uL = 7.78 Pa
460 uL = 10.4 Pa
575 uL = 13.0 Pa
1150 uL = 25.9 Pa
DOI: 10.15468/dl.ws9zn8
title: Occurrence Download

description: A dataset containing 1150 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Phyllergates heterolaemus)",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "License is one of (CC-BY 4.0, CC0 1.0)"
 ]
}

 The dataset includes 1150 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020559-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pfsvrm
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunbergia alata",
 "Country is Seychelles",
 "HasCoordinate is true"
 ]
}

 The dataset includes 12 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020561-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60893/figshare.jcp.28095308
title: Supplemental Material

description: Supporting figures and calculations
DOI: 10.60893/figshare.jcp.28095308.v3
title: Supplemental Material

description: Supporting figures and calculations
DOI: 10.60893/figshare.jcp.28095308.v2
title: Supplemental Material

description: Supporting figures and calculations
DOI: 10.15468/dl.a2rmfj
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Achalinus spinalis",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 14 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020560-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16753414
title: Dataset for 6-14 qubits evolving on network with varying connectivity

description: Dataset Description

This dataset contains density matrices stored in HDF5 format. The data is compressed using lossless compression  in the zip format - extract the archive to access the original .h5 files.

File Format & Structure

Format: HDF5 (.h5 files)

Data Organization: Files are organized hierarchically by number of qubits, connectivity, and initial conditions type. Each branch contains three data types:



Qubit populations

All two-qubit density matrix partitions

Connectivity per time step Data spans 500 time steps across 100 trials each.


Viewing and Analysis Tools:



HDFView - Official HDF5 viewer with graphical interface

Python: h5py, pandas, numpy libraries

R: rhdf5 package

MATLAB: Built-in HDF5 support

Online viewers:



MyHDF5 (web-based HDF5 viewer)

NASA Panoply (for scientific data)

HDFCloud (online HDF5 browser)




Code Availability

Python code for generating and analyzing these density matrices is available at: https://github.com/jacksonhenry3/Qnibble (depreciated) https://github.com/UnnatiAkhouri/QuNet (active)

 

These datasets were used in the research paper: Open-systems tools for nonthermalizing closed quantum systems

https://doi.org/10.1103/zt7h-fj8w

Usage

Extract the compressed archive to access the HDF5 files. The density matrices can be loaded and analyzed using standard HDF5 libraries in your preferred programming environment.
DOI: 10.5281/zenodo.16753415
title: Dataset for 6-14 qubits evolving on network with varying connectivity

description: Dataset Description

This dataset contains density matrices stored in HDF5 format. The data is compressed using lossless compression  in the zip format - extract the archive to access the original .h5 files.

File Format & Structure

Format: HDF5 (.h5 files)

Data Organization: Files are organized hierarchically by number of qubits, connectivity, and initial conditions type. Each branch contains three data types:



Qubit populations

All two-qubit density matrix partitions

Connectivity per time step Data spans 500 time steps across 100 trials each.


Viewing and Analysis Tools:



HDFView - Official HDF5 viewer with graphical interface

Python: h5py, pandas, numpy libraries

R: rhdf5 package

MATLAB: Built-in HDF5 support

Online viewers:



MyHDF5 (web-based HDF5 viewer)

NASA Panoply (for scientific data)

HDFCloud (online HDF5 browser)




Code Availability

Python code for generating and analyzing these density matrices is available at: https://github.com/jacksonhenry3/Qnibble (depreciated) https://github.com/UnnatiAkhouri/QuNet (active)

 

These datasets were used in the research paper: Open-systems tools for nonthermalizing closed quantum systems

https://doi.org/10.1103/zt7h-fj8w

Usage

Extract the compressed archive to access the HDF5 files. The density matrices can be loaded and analyzed using standard HDF5 libraries in your preferred programming environment.
DOI: 10.15468/dl.65jtvq
title: Occurrence Download

description: A dataset containing 502 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sobralia dichotoma"
 ]
}

 The dataset includes 502 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020562-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6xt2z6scpp
title: Accompanying Files for paper entitled: "Profound synthetic lethality between SMARCAL1 and FANCM " - Feng et al. Molecular Cell 2024

description: * CRISPR screen readcounts
Unprocessed blots
* Unprocessed microscopy images

Note: all sequencing data has been deposited at NCBI (GEO: GSE175752).
DOI: 10.15468/dl.xgqszk
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Loricaria lundbergi)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 12 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020563-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/6xt2z6scpp.2
title: Accompanying Files for paper entitled: "Profound synthetic lethality between SMARCAL1 and FANCM " - Feng et al. Molecular Cell 2024

description: * CRISPR screen readcounts
Unprocessed blots
* Unprocessed microscopy images

Note: all sequencing data has been deposited at NCBI (GEO: GSE175752).
DOI: 10.15468/dl.d5dfd7
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thunbergia alata",
 "Country is Singapore",
 "HasCoordinate is true"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020564-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ed2nfv
title: Occurrence Download

description: A dataset containing 74 records in GBIF matching the query:
SELECT "year", GBIF_EEARGCode( 1000, decimalLatitude, decimalLongitude, COALESCE(coordinateUncertaintyInMeters, 1000) ) AS eeaCellCode, classKey, class, genusKey, genus, COUNT(*) AS occurrences, MIN(COALESCE(coordinateUncertaintyInMeters, 1000)) AS minCoordinateUncertaintyInMeters, MIN(GBIF_TemporalUncertainty(eventDate, null)) AS minTemporalUncertainty FROM occurrence WHERE occurrenceStatus = 'PRESENT' AND genusKey IN (2284443, 2202786, 2161911, 2161467, 7652364, 2176168, 3092125, 2771094, 8782549, 2457378, 2453882, 2457825, 2454645, 2465626, 2466496, 2459675, 2444141, 2444221, 2447418, 2441658, 2442664, 3266899, 2473221, 2445496, 5221394, 2443339, 4553469) AND countrycode = 'BE' AND "year" &gt;= 1900 AND hasCoordinate = TRUE AND genusKey IS NOT NULL AND NOT ARRAY_CONTAINS(issue, 'ZERO_COORDINATE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_OUT_OF_RANGE') AND NOT ARRAY_CONTAINS(issue, 'COORDINATE_INVALID') AND NOT ARRAY_CONTAINS(issue, 'COUNTRY_COORDINATE_MISMATCH') AND (LOWER(identificationVerificationStatus) NOT IN ( 'unverified', 'unvalidated', 'not validated', 'under validation', 'not able to validate', 'control could not be conclusive due to insufficient knowledge', 'uncertain', 'unconfirmed', 'unconfirmed - not reviewed', 'validation requested' ) OR identificationVerificationStatus IS NULL) AND COALESCE(coordinateUncertaintyInMeters, 1000) &lt;= 10000 GROUP BY "year", eeaCellCode, classKey, class, genusKey, genus ORDER BY "year" DESC, eeaCellCode ASC, genusKey ASC;

 The dataset's 74 records were derived from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020542-250802193616735/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.29825855
title: Efficiency under epistasis of haplotype-based genomic selection for pure line breeding (complementary)

description: SNP files (sample.txt), phenotype files (values) for each epistasis type, selective process, cycle, and simulation.
DOI: 10.6084/m9.figshare.29825855.v1
title: Efficiency under epistasis of haplotype-based genomic selection for pure line breeding (complementary)

description: SNP files (sample.txt), phenotype files (values) for each epistasis type, selective process, cycle, and simulation.
DOI: 10.5281/zenodo.16754317
title: Anonymized Data
DOI: 10.5281/zenodo.16754318
title: Anonymized Data
DOI: 10.17632/tpzk9yjm3d.3
title: Magnetic Orbitals – The First Visual Revelation of Quantum Geometries in the Macroscopic World

description: Have the shapes of atomic orbitals ever been observed in the real world? 
This research presents the first experimental three-dimensional visualization of atomic orbital geometries.

By employing a bipolar Hall sensor in dynamic mode at a constant angle, magnetic field configurations were detected that are consistent—down to the finest detail—with the solutions of the Schrödinger equation for the hydrogen atom.

The results suggest a structural connection between the probabilistic concepts of quantum mechanics and observable macroscopic phenomena, proposing a new paradigm for unifying classical and quantum physics.

The entire work also provides a replicable guide for generating magnetic orbitals, thus offering a precise method for the potential control of matter at the subatomic level, through the construction of a "Magnetic Map of Matter"—usable here, in our world.
DOI: 10.48723/0xhc-vp63
title: Antibody levels towards Epstein Barr virus antigens and molecular mimics in multiple sclerosis patients and controls
title: Antikroppsnivåer mot Epstein Barr-virusantigen och molekylära sekvenshomologa proteinter hos patienter med multipel skleros och kontroller

description: This data was generated using plasma samples from the EIMS study (1). The overall goal of the EIMS study is to understand which lifestyle and genetic factors influence MS risk. The aim of this sub-study was to better understand how epstein barr virus can affect the onset of autoimmune reactions. The study includes data from 661 population based controls and 650 multiple sclerosis patients from Sweden. The data consists of antibody levels estimated using fluorescence-activated bead-based assay. Samples were run in duplicate. The levels were adjusted between plates using batch controlled samples. The values given are the average of the two run samples after batch correction.
HLA genotypes have been imputed from SNP genotypes in the HlA region of chromosome 6 using HLA*IMP:02 as described previously (2). 

The dataset contains of the following files:
- PNAS_Data_combined.csv (433 kB)
- MetaData.csv
- MetaDescription.docx
Details about the variables in the tables can be found in the documentation file
description: Dessa data genererades med hjälp av plasmaprover från EIMS-studien (1). Det övergripande målet med EIMS studien är att förstå vilka livstil och genetiska faktorer som påverkar MS risk. Denna delstudies mål var att bättre förstå hur epstein barr virus kan påverka uppkomst av autoimmuna reaktioner. Studien inkluderar data från 661 populationsbaserade kontroller och 650 multipel sklerospatienter från Sverige. Datan består av antikroppsnivåer mätta med fluorescensaktiverad pärlbaserad analys. Prover kördes i duplikat. Nivåerna justerades mellan plattorna med användning av batchkontrollprover. De angivna värdena är medelvärdet av de två körningarna efter batchkorrigering.
HLA-genotyper har imputerats från SNP-genotyper i HlA-regionen av kromosom 6 med hjälp av HLA*IMP:02 som beskrivits tidigare (2).

Datasetet består av följande filer:
- PNAS_Data_combined.csv (433 kB)
- MetaData.csv
- MetaDescription.docx
Mer information om variablerna i tabellerna finns i dokumentationsfilen.
DOI: 10.48723/pvvk-a850
title: Antibody levels towards Epstein Barr virus antigens and molecular mimics in multiple sclerosis patients and controls
title: Antikroppsnivåer mot Epstein Barr-virusantigen och molekylära sekvenshomologa proteinter hos patienter med multipel skleros och kontroller

description: This data was generated using plasma samples from the EIMS study (1). The overall goal of the EIMS study is to understand which lifestyle and genetic factors influence MS risk. The aim of this sub-study was to better understand how epstein barr virus can affect the onset of autoimmune reactions. The study includes data from 661 population based controls and 650 multiple sclerosis patients from Sweden. The data consists of antibody levels estimated using fluorescence-activated bead-based assay. Samples were run in duplicate. The levels were adjusted between plates using batch controlled samples. The values given are the average of the two run samples after batch correction.
HLA genotypes have been imputed from SNP genotypes in the HlA region of chromosome 6 using HLA*IMP:02 as described previously (2). 

The dataset contains of the following files:
- PNAS_Data_combined.csv (433 kB)
- MetaData.csv
- MetaDescription.docx
Details about the variables in the tables can be found in the documentation file
description: Dessa data genererades med hjälp av plasmaprover från EIMS-studien (1). Det övergripande målet med EIMS studien är att förstå vilka livstil och genetiska faktorer som påverkar MS risk. Denna delstudies mål var att bättre förstå hur epstein barr virus kan påverka uppkomst av autoimmuna reaktioner. Studien inkluderar data från 661 populationsbaserade kontroller och 650 multipel sklerospatienter från Sverige. Datan består av antikroppsnivåer mätta med fluorescensaktiverad pärlbaserad analys. Prover kördes i duplikat. Nivåerna justerades mellan plattorna med användning av batchkontrollprover. De angivna värdena är medelvärdet av de två körningarna efter batchkorrigering.
HLA-genotyper har imputerats från SNP-genotyper i HlA-regionen av kromosom 6 med hjälp av HLA*IMP:02 som beskrivits tidigare (2).

Datasetet består av följande filer:
- PNAS_Data_combined.csv (433 kB)
- MetaData.csv
- MetaDescription.docx
Mer information om variablerna i tabellerna finns i dokumentationsfilen.
DOI: 10.17632/n3c82587wj
title: Supplementary Tables – Post-Inflammatory Pigmentary Changes in Psoriasis Treated With Biologics

description: This dataset includes supplementary tables (Tables 1–11) from the study titled Post-Inflammatory Pigmentary Changes in Psoriasis Treated With Biologics: A National Multicenter Analysis. The tables present adjusted odds ratios (aORs) and 95% confidence intervals for various pigmentary disorders in patients with psoriasis treated with biologic or topical therapies compared to matched untreated controls. Subgroup analyses by biologic subclass (TNF, IL-17, IL-23, IL-12/23 inhibitors) are also included. All models are adjusted for age, sex, race, and ethnicity.