cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/thb3rmxxr6.1
title: Chiozza-LogronoJ Lameness Grazing Dairy Cows

description: Lameness in Early Lactation is Associated with Lower Productive and Reproductive Performance in a Herd of Supplemented Grazing Dairy Cows The main aim of this study was to assess the associations between the timing of lameness clinical case occurrence in lactation with productive and reproductive performances in grazing Holstein cows. A cohort study was carried out on a dataset with records from a commercial dairy herd (Buenos Aires, Argentina) for cows that calved and were dried off from January 2010 through June 2017. The first recorded event of lameness per lactation was considered for the study. Criteria for lactation inclusion included not having uterine diseases, mastitis, or anovulatory cysts during the studied risk period (i.e., up to 200 DIM). Therefore, a total of 7156 out of 20,086 lactations were included in the statistical analysis. The association between lameness case occurrence in lactation (cows not lame (LG0) vs. lame cows between parturition and first service (LG1) vs. lame cows between first service and first pregnancy (LG2)) with productive (i.e., accumulated milk yield to 150 DIM (MILK150) and 300 DIM (MILK305)) and reproductive performances (hazard of insemi-nation and pregnancy) was analyzed with linear regression models and proportional hazard re-gression models, respectively. Lame cows produced 161 and 183 kg less MILK150 and MILK305 than non-lame herd mates, respectively. Moreover, LG1 cows produced 216 kg less MILK150 and 200 kg less MILK305 than LG0 cows, and LG2 cows also produced 58 kg less MILK150 and 158 kg less MILK305 than LG0 cows. The LG1 cows had a lower hazard of service than LG0 cows (HR = 0.43, 95%CI = 0.39–0.47). Furthermore, LG1 cows had a lower hazard of pregnancy than LG0 cows (HR = 0.52, 95%CI = 0.46–0.59) and took longer to get pregnant than LG0 cows (median [95%CI], 139 [132–144] vs. 101 [99–103]). Moreover, LG2 cows had a much lower hazard of pregnancy than LG0 cows (HR = 0.08, 95%CI = 0.05–0.12) and much longer calving to first pregnancy interval than LG0 cows (188 [183–196] vs. 101 [99–103]). In conclusion, cows that become lame in early lactation produce less milk and have lower hazards of insemination and pregnancy than herd mates that are healthy or become lame later in lactation. In addition, cows that become lame immediately after the voluntarily waiting period have the poorest reproductive performance (i.e., they have the lowest hazard of pregnancy and the longest calving to pregnancy interval).
DOI: 10.17632/skp7dwjvxt.1
title: 2021-08-03-HepG2 cells

description: Data is for the theoretical analysis of dielectric properties of HepG2 cell suspension.
DOI: 10.17632/hzjsr56fkb.3
title: Isometric Plantarflexion Moment Prediction SVR

description: 1. Data collection during isometric ankle joint plantarflexion at 5 different postures, incluidng sEMG raw signals, ultrasound imaging videos, joint moment measurements from nine able-bodied participants. 2. sEMG signal time-domain features extraction and ultrasound imaging structural and functional features extraction results. 3. Correlation analysis results between each neuromuscular feature and measured ankle joint plantarflexion moment. 4. Illustrative support vector machine regresion (SVR) and deep feedforward neural network (FFNN) models training and prediction code and results, including the saved results in .mat files, root mean square error and R-square values between trained and measured joint moments, as well as between predicted and measured joint moment. 5. SVR and FFNN regression models training and prediction results summary for individual participant.
DOI: 10.17632/yt52fw55wx.2
title: Attachment of Osteoblastic MC3T3-E1 Cells on Diamond-Like Carbon-Coated Silicon Plates

description: Data were collected by experiments in which DLC was coated on the silicon plate surface, then mouse osteoblastic MC3T3-E1 or fibroblastic NIH3T3 cells were cultured with the coated plates. Cell proliferation by a colorimetric assay and morphological observations using a field emission scanning electron microscope (FE-SEM) were examined. Data include an advantage of the proliferation of osteoblastic cells on DLC-coated plate and visualized images of osteoblastic cell on noncoated or DLC-coated silicon plate. Figure 1. Proliferation of NIH3T3 cells (a) or MC3T3-E1 cells (b) on noncoated or DLC-coated silicon plate. After attachment of the cells on each plate, the proliferation of the cells was assessed on days 3 and 7 post-inoculation. Figure 2. Raw Data Set of FE-SEM pictures of MC3T3-E1 cell. Attached cell on noncoated (a) or DLC-coated (b) silicon plates were observed by FE-SEM. Figure 3. Data Set of flat cross section of MC3T3-E1 on noncoated silicon plate. Figure 4. Data Set of flat cross section of MC3T3-E1 on DLC-coated silicon plate. All the separated pictures and condition of each picture taken are included in the data set. A detailed description of data could be found in the “Data in Brief” article “Manome Y., Tachibana T., Hiratsuka M., Sato K., Ohgoe Y., Hirakuri K. Osteoblastic MC3T3-E1 Cells on the Surface of Diamond-Like Carbon-Coated Silicon Plates: Field Emission Scanning Electron Microscopy Data", in 2021, submitted.
DOI: 10.17632/vcn2hfhwvm.2
title: Genome Mining Data of Bacillus cabrialesii TE3T

description: This dataset contains (1) the Bacillus cabrialesii TE3T genome, (2) the Bacillus cabrialesii TE3T genome-mining results and (3) results and BGC sequences used to construct BGC networking of Bacillus cabrialesii TE3T BGCs through BiG-SCAPE.
DOI: 10.17632/fkk5g48ksw.1
title: Systematic Literature Review on Strategy Maps Development

description: List of documents extracted for a Systematic Literature Review on Strategy Maps Development
DOI: 10.17632/2yy6z3sfvr.1
title: SBAS-InSAR Monitoring in Zhouqu, China

description: Data for: Spatiotemporal evolution and failure mechanism of a complex landslide along active fault in Zhouqu region, China.
DOI: 10.17632/yb4d6h4xcd.1
title: contact-geometry

description: Datasets of van der Waals interaction geometry from both protein self-interactions and protein-ligand interactions. We identified van der Waals interactions using PROBE in a set of non-redundant protein structures and a set of protein-ligand structures and categorized them based on various properties. Within each category, we aligned all observed contacts based on amino acid backbone. We analyzed this data in a manuscript that is currently under review and release the data here for broader use.
DOI: 10.6084/m9.figshare.13259017
title: Mapping of Ug99 stem rust resistance in Canadian durum wheat

description: Stem rust, caused by <i>Puccinia graminis</i> f. sp. <i>tritici</i> (<i>Pgt</i>), has potential to cause major yield losses in durum wheat. Development of durum cultivars with improved resistance to stem rust is a sustainable option for effective control of this disease. This study was conducted to identify genomic regions associated with resistance to Ug99-derived <i>Pgt</i> races using a doubled haploid (DH) mapping population produced from a cross between the resistant experimental line A9919-BY5C and the moderately susceptible cultivar ‘Strongfield’. The parents and DH lines were phenotyped for adult plant disease severity and infection response at Njoro, Kenya, for four years, and for seedling reaction to race TTKSK in a containment facility near Morden, Canada. Composite interval mapping using 612 SNP and DArT markers indicated four significant QTL for resistance to stem rust on chromosomes 1B, 4A, 5B, and 6A. A major and stable QTL from A9919-BY5C was identified on the short arm of chromosome 6A (6AS), which accounted for 71% of variation explained for seedling resistance and up to 46% for field resistance. This QTL mapped near the <i>Sr8</i> locus and may be <i>Sr8155B1</i>, or a novel gene at the same location. Another QTL for adult plant resistance from A9919-BY5C was mapped on chromosome 1B that explained up to 14% of the phenotypic variation and likely is <i>Sr14</i>. Two minor QTL were identified in ‘Strongfield’ on chromosomes 4A and 5B that were inconsistent over years. Markers associated with the 6AS and 1B QTL can be used to proactively stack resistance to Ug99-derived races of <i>Pgt</i> into Canadian durum wheat.
DOI: 10.6084/m9.figshare.13259017.v1
title: Mapping of Ug99 stem rust resistance in Canadian durum wheat

description: Stem rust, caused by <i>Puccinia graminis</i> f. sp. <i>tritici</i> (<i>Pgt</i>), has potential to cause major yield losses in durum wheat. Development of durum cultivars with improved resistance to stem rust is a sustainable option for effective control of this disease. This study was conducted to identify genomic regions associated with resistance to Ug99-derived <i>Pgt</i> races using a doubled haploid (DH) mapping population produced from a cross between the resistant experimental line A9919-BY5C and the moderately susceptible cultivar ‘Strongfield’. The parents and DH lines were phenotyped for adult plant disease severity and infection response at Njoro, Kenya, for four years, and for seedling reaction to race TTKSK in a containment facility near Morden, Canada. Composite interval mapping using 612 SNP and DArT markers indicated four significant QTL for resistance to stem rust on chromosomes 1B, 4A, 5B, and 6A. A major and stable QTL from A9919-BY5C was identified on the short arm of chromosome 6A (6AS), which accounted for 71% of variation explained for seedling resistance and up to 46% for field resistance. This QTL mapped near the <i>Sr8</i> locus and may be <i>Sr8155B1</i>, or a novel gene at the same location. Another QTL for adult plant resistance from A9919-BY5C was mapped on chromosome 1B that explained up to 14% of the phenotypic variation and likely is <i>Sr14</i>. Two minor QTL were identified in ‘Strongfield’ on chromosomes 4A and 5B that were inconsistent over years. Markers associated with the 6AS and 1B QTL can be used to proactively stack resistance to Ug99-derived races of <i>Pgt</i> into Canadian durum wheat.
DOI: 10.17632/jvzcpt65mh.1
title: Latitudinal and Seasonal Asymmetries of the Helium bulge in the Martian Upper Atmosphere

description: The contents of the data files correspond to the data shown in figures of the manuscript " Latitudinal and Seasonal Asymmetries of the Helium bulge in the Martian Upper Atmosphere" by Neha Gupta, N. V. Rao, S. Bougher, M. K. Elrod. More descriptions of the data are given in the manuscript # 2021JE006976 and also in 2021JE006976_README.txt in this repository.
DOI: 10.5517/ccdc.csd.cc25g23v
title: CCDC 2009516: Experimental Crystal Structure Determination

description: Related Article: Ahmed H. Tantawy, Xiang-Gao Meng, Adel A. Marzouk, Ali Fouad, Ahmed H. Abdelazeem, Bahaa G. M. Youssif, Hong Jiang, Man-Qun Wang|2021|RSC Advances|11|25738|doi:10.1039/D1RA04061H
DOI: 10.5517/ccdc.csd.cc27p7y4
title: CCDC 2076006: Experimental Crystal Structure Determination

description: Related Article: Steven P. Fisher, Eric W. Reinheimer|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28c7pl
title: CCDC 2096179: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Victor Samper Barcelo, Stefan Bienz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28c8fc
title: CCDC 2096202: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Victor Samper Barcelo, Stefan Bienz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28c8jg
title: CCDC 2096205: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Victor Samper Barcelo, Stefan Bienz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28c8rp
title: CCDC 2096212: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Victor Samper Barcelo, Stefan Bienz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28c965
title: CCDC 2096226: Experimental Crystal Structure Determination

description: Related Article: Anthony Linden, Victor Samper Barcelo, Stefan Bienz|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28cc78
title: CCDC 2096289: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28cbcc
title: CCDC 2096262: Experimental Crystal Structure Determination

description: Related Article: J. G. Malecki|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28cx1m
title: CCDC 2096810: Experimental Crystal Structure Determination

description: Related Article: Frank R. Fronczek|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28d9dd
title: CCDC 2097193: Experimental Crystal Structure Determination

description: Related Article: Brian W. Skelton, Effendy, Allan H. White|2021|CSD Communication|||
DOI: 10.48370/ofd/j44hvz/nxmbyz
title: HMW_Anemone_nemorosa_L._H_9439.jpg

description: :unav
DOI: 10.48370/ofd/j44hvz
title: Zawilec gajowy (Anemone nemorosa L.), 9439

description: Herbarium
DOI: 10.48370/ofd/9rbhzm/rruwjg
title: HMW_Anemone_nemorosa_L._H_0888.jpg

description: :unav
DOI: 10.48370/ofd/9rbhzm
title: Zawilec gajowy (Anemone nemorosa L.), 888

description: Herbarium
DOI: 10.48370/ofd/uoscgc/rbhded
title: HMW_Anemone_nemorosa_L._H_4669.jpg

description: :unav
DOI: 10.48370/ofd/uoscgc
title: Zawilec gajowy (Anemone nemorosa L.), 4669

description: Herbarium
DOI: 10.48370/ofd/phn30w/qazok4
title: HMW_Anemone_nemorosa_L._H_1761.jpg

description: :unav
DOI: 10.48370/ofd/phn30w
title: Zawilec gajowy (Anemone nemorosa L.), 1761

description: Herbarium
DOI: 10.25592/uhhfdm.9565
title: Short-term vs. Long-term Contracting: Empirical Assessment of the Ratchet Effect in Supply Chain Interaction - Data

description: Data from lab experiments in the paper Johnsen, L. C., Sadrieh, A., & Voigt, G. (2021). Short‐term vs. Long‐term Contracting: Empirical Assessment of the Ratchet Effect in Supply Chain Interaction. <em>Production and Operations Management</em>.
DOI: 10.25592/uhhfdm.9564
title: Short-term vs. Long-term Contracting: Empirical Assessment of the Ratchet Effect in Supply Chain Interaction - Data

description: Data from lab experiments in the paper Johnsen, L. C., Sadrieh, A., & Voigt, G. (2021). Short‐term vs. Long‐term Contracting: Empirical Assessment of the Ratchet Effect in Supply Chain Interaction. <em>Production and Operations Management</em>.
DOI: 10.48370/ofd/youjg4/17vj5n
title: HMW_Asplenium_viride_Huds._H_01833.jpg

description: :unav
DOI: 10.48370/ofd/youjg4
title: Zanokcica zielona (Asplenium viride Huds.), 1833

description: Herbarium
DOI: 10.26084/ioerfdz-data-de-2021-2
title: Städtische Grünflächen und Indikatoren: Heidelberg
title: Urban Greenspaces and Indicators: Heidelberg

description: Der Datensatz enthält alle öffentlich zugänglichen Grünflächen der Stadt Heidelberg einschließlich einer Attributtabelle mit 38 verschiedenen Indikatoren. Die Grünflächen und Indikatorenwerte sind zentrale Datengrundlage für die Bewertung der Grünflächen nach Kriterien oder der Eignung für bestimmte Aktivitäten mittels der meinGrün-App (app.meingruen.org). Die Grünflächenpolygone wurden mittels eines automatischen Ansatzes generiert, der in Ludwig et al. (2021) näher beschrieben ist. Die Bildung erfolgt auf Grundlage von Annahmen über physische Barrieren, speziell dem Straßen-, Schienen-, und Wassernetz sowie Grenzen bestimmter benachbarter Landnutzungsklassenkombinationen. Für Heidelberg erfolgte die Bildung der Grünflächenpolygone durch eine kombinierte Verarbeitung von OpenStreetmap und städtischen Daten, speziell einer Geometrie zu statistischen Blöcken, den Park- und Grünanlagen, Spielplätzen, Friedhöfen, Kleingärten und Wäldern. Indikatoren wurden durch das Leibniz-Institut für ökologische Raumentwicklung, dem Heidelberg Institute for Geoinformation Technology an der Universität Heidelberg und dem Institut für Kartographie der TU Dresden prozessiert. Die für die Berechnung der Indikatoren verwendeten Datengrundlagen und Berechnungsvorschriften sind in der Metadatenbeschreibung dokumentiert.
description: This dataset contains publicly accessible green spaces in Heidelberg and their indicators.
DOI: 10.12751/g-node.2zwbb6
title: Data for Graded Remapping of Hippocampal Ensembles under Sensory Conflicts

description: Data used in the manuscript "Graded Remapping of Hippocampal Ensembles under Sensory Conflicts." gXXXX is the gerbil number and dX is the day of recording. ssX stands for simulated swap sessions. Edit the path to the data before running each script. The code to analyze the data is located at https://github.com/dustinf1989/Graded_Remapping
description: IsSupplementTo: Fetterhoff et al: Graded Remapping of Hippocampal Ensembles under Sensory Conflicts.
DOI: 10.26084/ioerfdz-data-de-2021-4
title: Städtische Grünflächen und Aktivitäten: Heidelberg
title: Urban Greenspaces and Activities: Heidelberg

description: Der Datensatz enthält alle öffentlich zugänglichen Grünflächen der Stadt Heidelberg einschließlich einer Bewertung für die Eignung für physische und passive Aktivitäten. Die Attributtabelle enthält Scores, welche die Eignung der Grünflächen in Bezug auf die Durchführung von 20 verschiedenen Aktivitäten ausdrücken. Die Scores sind Ergebnis einer multikriteriellen Bewertung, welche in Cakir et al. (2021) beschrieben ist. Bei der Berechnung wurden die folgenden Eingaben berücksichtigt: (i) normierte Indikatorwerte der Kriterien (siehe https://doi.org/10.26084/IOERFDZ-DATA-DE-2021-2);  (ii) die von den Nutzern definierte Gewichtung (siehe Standardgewichte von 0 bis 10 in Tabelle 1) der Kriterien. Die Grünflächenpolygone wurden mittels eines automatischen Ansatzes generiert, der in Ludwig et al. (2021) näher beschrieben ist. Die Bildung erfolgt auf Grundlage von Annahmen über physische Barrieren, speziell dem Straßen-, Schienen-, und Wassernetz sowie Grenzen bestimmter benachbarter Landnutzungsklassenkombinationen. Für Heidelberg erfolgte die Bildung der Grünflächenpolygone durch eine kombinierte Verarbeitung von OpenStreetmap und städtischen Daten, speziell einer Geometrie zu statistischen Blöcken, den Park- und Grünanlagen, Spielplätzen, Friedhöfen, Kleingärten und Wäldern. Indikatoren wurden durch das Leibniz-Institut für ökologische Raumentwicklung, dem Heidelberg Institute for Geoinformation Technology an der Universität Heidelberg und dem Institut für Kartographie der TU Dresden prozessiert. Die für die Berechnung der Indikatoren verwendeten Datengrundlagen und Berechnungsvorschriften sind in der Metadatenbeschreibung dokumentiert

description: This dataset contains publicly accessible green spaces in Heidelberg and a rating for suitability for physical and passive activities.
DOI: 10.5281/zenodo.5155255
title: Gut bacterial communities of Lymantria xylina and their associations with host development and diets

description: The gut microbiota of insects have a wide range of effects on host nutrition, physiology, and behavior. The structure of gut microbiota might also be shaped by their environment causing them to adjust to their hosts; thus, the objective of this study was to examine variations in the morphological traits and gut microbiota of <em>Lymantria xylina</em> in response to natural and artificial diets using high-throughput pyrosequencing. Regarding morphology, the head width for larvae fed on a sterilized artificial diet was smaller than for larvae fed on a non-sterilized host-plant diet in the early instars. The gut microbiota diversity of <em>L</em><em>.</em><em> xylina</em> fed on different diets was significantly different but did not change during different development periods. This seemed to indicate vertical inheritance occurred in <em>L</em><em>.</em><em> xylina</em> mutualistic symbionts. <em>Acinetobacter</em> and <em>Enterococcus</em> were dominant in eggs. In first instar larvae, <em>Acinetobacter</em> accounted for 33.52% for the sterilized artificial diet treatment, while <em>Enterococcus </em>(67.88%) was the predominant bacteria for the non-sterilized host-plant diet treatment. Gut microbe structures were adapted to both diets through vertical inheritance and self-regulation. This study clarified the impacts of microbial symbiosis on <em>L</em><em>.</em><em> xylina</em> and may provide new possibilities for improving the control of these bacteria.
DOI: 10.5281/zenodo.5137667
title: Data from: The Risk of Indoor Sports and Culture Events for the Transmission of COVID-19

description: Files reqiured to run the R-scripts (https://github.com/oliverpurschke/restart19_contacts) for the preparation, analysis and visualization of the UWB-contact tracer data within the Restart-19 project.
DOI: 10.5281/zenodo.5137666
title: Data from: The Risk of Indoor Sports and Culture Events for the Transmission of COVID-19

description: Files reqiured to run the R-scripts (https://github.com/oliverpurschke/restart19_contacts) for the preparation, analysis and visualization of the UWB-contact tracer data within the Restart-19 project.
DOI: 10.5281/zenodo.5155220
title: Inputs and results of "A quantitative and qualitative citation analysis to retracted articles in the humanities domain"

description: This repository contains the datasets and visualizations generated in our work: <strong>"A quantitative and qualitative citation analysis to retracted articles in the humanities domain"</strong>. <strong>Note:</strong> the data are all contained inside the <strong><em>data.zip</em> </strong>file. You need to unzip the container to get access to all the files and directories listed below. The data (citations) gathered accompanied by their annotated characteristics are stored in <strong><em>data/</em>:</strong> <em>cits.csv: </em>a dataset containing all the entities (rows in the CSV) which have cited a retracted article in the humanities domain. Each citing entity (row) is accompanied by a set of features (columns) that characterizes it.<br> <strong>Note: </strong>this dataset is licensed under a Creative Commons public domain dedication (CC0). <em>content.csv: </em>a dataset containing the abstracts and the in-text citation contexts of all the citing entities gathered.<br> <strong>Note: </strong>the data keep their original license (the one provided by their publisher). This dataset is provided in order to favor the reproducibility of the results obtained in our work. <strong>Topic modeling</strong> We run a topic modeling analysis on the textual features gathered (i.e. abstracts and citation contexts). The results are stored inside the <em><strong>topic_model/</strong></em> directory. The topic modeling has been done using MITAO, a tool for mashing up automatic text analysis tools and creating a completely customizable visual workflow [1]. The directory <em><strong>workflow/ </strong></em>contains the workflows used in MITAO. The topic modeling results for each textual feature are separated into two different folders, <em><strong>abstract/</strong></em> for the abstracts, and <em><strong>cits_context/</strong></em> for the in-text citation contexts. Both the directories contain the following directories/files: <em><strong>datasets_and_views/: </strong></em>the datasets and visualizations generated using MITAO. <em><strong>ldamodel_corpus_dict/: </strong></em>it contains the dictionary, the LDA topic model, and the tokenized and vectorized corpus. <em><strong>rawdata/: </strong></em>the textual collection, metadata, and stopwords used as input in the workflow of MITAO <strong>References</strong> [1] Ferri, P., Heibi, I., Pareschi, L., & Peroni, S. (2020). MITAO: A User Friendly and Modular Software for Topic Modelling [JD]. PuntOorg International Journal, 5(2), 135–149. https://doi.org/10.19245/25.05.pij.5.2.3
DOI: 10.15468/a35zch
title: A new genus and ten new species of spiders (Arachnida, Araneae) from Iran

description: This dataset contains the digitized treatments in Plazi based on the original journal article Zamani, Alireza, Marusik, Yuri M. (2021): A new genus and ten new species of spiders (Arachnida, Araneae) from Iran. ZooKeys 1054: 95-126, DOI: http://dx.doi.org/10.3897/zookeys.1054.70408, URL: http://dx.doi.org/10.3897/zookeys.1054.70408
DOI: 10.5281/zenodo.5155270
title: RPH analysis

description: None