cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21219644
title: Dataset of threat

description: Dear reviewer: This is the dataset of threat, which was used in the InVEST Model.
DOI: 10.6084/m9.figshare.21219644.v2
title: Dataset of threat

description: Dear reviewer: This is the dataset of threat, which was used in the InVEST Model.
DOI: 10.6084/m9.figshare.21219644.v1
title: Datasets of threat

description: Dear reviewer: This is the dataset of threat, which was used in the InVEST Model.
DOI: 10.5281/zenodo.6787966
title: Identification of potential modulators of IFITM3 by in-silico modeling and virtual screening

description: Modeled structure of IFITM3 and Desmond MD trajectory files for IFITM3 and IFITM3-ligand complexes. Please see README file.
DOI: 10.5281/zenodo.6787967
title: Identification of potential modulators of IFITM3 by in-silico modeling and virtual screening

description: Modeled structure of IFITM3 and Desmond MD trajectory files for IFITM3 and IFITM3-ligand complexes. Please see README file.
DOI: 10.3886/e179521v1-128040
title: Data and code for Mental wellbeing and job loss during health crisis: International evidence

description: Using a rich individual level dataset from six countries, we examine the association between job loss and mental wellbeing loss during the first phase of the COVID-19 pandemic. We consider four indicators of mental health status based on their severity, viz. anxiety, insomnia, boredom, and loneliness. We draw our conclusions based on two groups of countries that differ by the timing of their peak infections count. Using a logit model and controlling for endogeneity, we find that the people who lost their jobs due to the pandemic are more likely to suffer from mental wellbeing loss, especially insomnia and loneliness. Additionally, people with financial liabilities, such as housing mortgages, are among the mentally vulnerable groups to anxiety. Women, urban residences, youth, low-income groups, and tobacco users are more prone to mental wellbeing loss. The findings from this research have significant policy implications on infectious disease control measures and mental health status due to lockdowns and social distancing. <b></b>
description: Secondary data sourced from Belot et al. (2020).
DOI: 10.5281/zenodo.7118167
title: PINN SVE data assimilation

description: This dataset contains input and output files, figures and codes for Physics-informed neural networks based data assimilation that solves the Saint-Venant equations.
DOI: 10.5281/zenodo.7112126
title: Connective Field maps via reverse-correlation

description: This data set contains processed CF and, where applicable, pRF mapping data for our project investigating the robustness of our CF reverse-correlation methods in the presence of eye movement and optical defocus. There are several participants in this archive. All of them participated in the LaserKiwi experiment in which they engaged in a video game, shooting coronaviruses with their eye gaze. Three participants (P4, P5, P6) also participated in the Unstable Eye experiments in which we used a classical sweeping bar pRF mapping design either with stable eye fixation in the screen centre or at a randomly jumping fixation dot. You will need SamSrf to read these files (version 9.3 recommended). It has been tested on Matlab R2020a & b.
DOI: 10.5281/zenodo.7115846
title: Data for Cell Reports paper "Cortex-wide spontaneous activity non-linearly steers propagating sensory-evoked activity in awake mice"

description: Datasets for Cell Reports paper "Cortex-wide spontaneous activity non-linearly steers propagating sensory-evoked activity in awake mice", including mouse cortical neural activity recording (preprocessed), behavioral recording and other analysis results during intermedia computation steps.
DOI: 10.5281/zenodo.7115845
title: Data for Cell Reports paper "Cortex-wide spontaneous activity non-linearly steers propagating sensory-evoked activity in awake mice"

description: Datasets for Cell Reports paper "Cortex-wide spontaneous activity non-linearly steers propagating sensory-evoked activity in awake mice", including mouse cortical neural activity recording (preprocessed), behavioral recording and other analysis results during intermedia computation steps.
DOI: 10.15151/esrf-es-884300792
title: ITABAG: 3D structures of macromolecules related to human health

description: The ITABAG includes structural biologists from Universities, the National Research Council and Hospital research centres in Italy. The laboratories take advantage of single crystal and small angle X-ray diffraction methods to study the structure-function relationships in various macromolecules. A unifying factor for the vast majority of the macromolecules under study is that they are related to human health, either directly, being human proteins involved in some disease, or indirectly, as proteins expressed by human pathogens and validated as potential pharmacological targets. Other projects investigate basic chemical processes, such as crystal growth, or aim at characterising macromolecules with potential biotechnological applications.
DOI: 10.15151/esrf-es-896517264
title: Southampton, Bristol, Cardiff, Exeter, KCL, UCL Royal Free Block Allocation Group (BAG)

description: This BAG coordinates activities of groups from the South-West of the UK. The focus is on projects in Immunology, transcriptional regulation, and enzymology. A particular strength are the macromolecular complexes that several of the groups target. The activities in rational protein design (Bristol) and cancer immunology and enzyme mechanism (Southampton) are particular highlights. Cardiff is joining the bag as a new member. Please note comments in the report on COVID and sample shipment. Experimental work has been affected by Covid, which has reduced the output, and by travel restrictions. Further, we have had problems with loosing samples on transport as they were held up in customs, with three affected shipments. Due to these complexities Portsmouth have decided to leave the bag.
DOI: 10.15151/esrf-es-898078117
title: Diffuse scattering in NiCoMnTi all-d-Heusler alloys

description: We aim at measuring the thermal diffuse scattering in single crystals subjected to different heat treatment to analyse the precursor phenomena in the new all-d-Heusler magnetic shape memory alloys. Since the degree of order depends on the heat treatment, this allows to investigate the influence of chemical order on the vibrational properties and phonon softening close to the phase transition.
DOI: 10.15151/esrf-es-897012021
title: Exploring bone structural adaptation across the evolution of deep-sea teleost fishes

description: Deep-sea teleost fishes are a major component of oceanic ecosystems and biomass. How their anatomy adapted to this extreme environment is a key evolutionary biology question. In particular, the structure of their bones is proposed to be peculiar to deal with water pressure and the scarcity of resources, but this has not been properly tested because no comparative framework exists on the matter. In this proposal, we aim at building such a framework of comparative fish bone microstructure across deep-sea teleost diversity. We will use established quantitative methods based on µCT data, to compare bone compactness in a broad range of species. This requires acquiring 3D microtomographic data with enhanced contrast and at a high-throughput, conditions that are ideally met at the ESRF BM18 or BM05 beamlines.
DOI: 10.6084/m9.figshare.21219926
title: LV Pedestrian Bridge.xlsx

description: Data set of all the auto vs. ped collisions and injuries that occured on four intersections of the the Las Vegas Strip between July 1997 and March 2019. The intersections are as follows. 1) Las Vegas Boulevard & Sahara Avenue 2) Las Vegas Boulevard & Flamingo Road 3) Las Vegas Boulevard & Spring Mountain Road 4) Las Vegas Boulevard & Harmon Avenue
DOI: 10.21227/ajw5-t756
title: ECG and EEG data during stress

description: Mental health greatly affects the quality of life. The ability to detect and classify multiple levels of stress is therefore imperative. The aim of this work is to develop machine learning models for detection and multiple level classification of stress through ECG and EEG signals for both unspecified and specified genders. The models for the detection of stress from ECG are developed for real-world use, while the models based on ECG and EEG for the detection and multiple level classification of stress are devised towards clinical use. The detection models are achieved through developing and evaluating multiple individual classifiers. Stacking technique comprising multiple individual classifiers working in conjunction, on the other hand, is employed to achieve multilevel stress classification models. The models were trained and tested using ECG and EEG features extracted from 30 subjects. It is shown that most of the time kNN and SVM classifiers yielded highest classification accuracy for stress detection from ECG, and ECG together with EEG, and the performances of our models for unspecified (mixed) genders are comparable to those of other studies for both the detection and multilevel classification of stress. This study also reveals that the difference in genders affects classification accuracy for low-stress detection from ECG, any levels of stress detection from ECG and EEG, and multilevel stress classification from ECG and EEG – the classification accuracy for females is lower than that for males.
DOI: 10.5517/ccdc.csd.cc2724s8
title: CCDC 2057649: Experimental Crystal Structure Determination

description: Related Article: Peng-Ran Cao, Min Li, Jing-Shu Zhang, Yi-Lei Zheng, Jie Chen, Yong-Qin Zhao, Xiao-Dong Qi, Pan-Hu Zhu, Yu-Cheng Gu, Ling-Yi Kong, Ming-Hua Yang|2022|Org.Lett.|24|6789|doi:10.1021/acs.orglett.2c02666
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2724zg
title: CCDC 2057655: Experimental Crystal Structure Determination

description: Related Article: Peng-Ran Cao, Min Li, Jing-Shu Zhang, Yi-Lei Zheng, Jie Chen, Yong-Qin Zhao, Xiao-Dong Qi, Pan-Hu Zhu, Yu-Cheng Gu, Ling-Yi Kong, Ming-Hua Yang|2022|Org.Lett.|24|6789|doi:10.1021/acs.orglett.2c02666
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2b7lfm
title: CCDC 2152250: Experimental Crystal Structure Determination

description: Related Article: Vincent Boquet, Ali Nasrallah, Alejandro L. Dana, Erwan Brunard, Pablo H. Di Chenna, Fernando J. Duran, Pascal Retailleau, Benjamin Darses, Marie Sircoglou, Philippe Dauban|2022|J.Am.Chem.Soc.|144|17156|doi:10.1021/jacs.2c07337
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7118145
title: New Zealand OISST data from 14 coastal locations

description: The following MATLAB .mat file ( sponge_data_oisst_v2.mat) contains daily records of sea surface temperature spanning 01 Jan 1992 to 31 May 2022 from 14 locations around the New Zealand coastline, extracted from the OISST data set (https://doi.org/10.25921/RE9P-PT57), as analysed in Bell et al. (2022). Also included are MATLAB .m files to (1) extract daily time series of SST from a local copy of the global OISST netcdf files (bell_etal_extract_OISST.m) and (2) undertake the analysis of marine heatwaves in the sponge_data_oisst_v2.mat subset of these data (bell_etal_analyze_OISST.m), as performed in Bell et al. (2022). We acknowledge the NOAA OI SST V2 High Resolution Dataset provided by the NOAA PSL, Boulder, Colorado, USA, from their website at https://psl.noaa.gov
DOI: 10.5281/zenodo.7118144
title: New Zealand OISST data from 14 coastal locations

description: The following MATLAB .mat file ( sponge_data_oisst_v2.mat) contains daily records of sea surface temperature spanning 01 Jan 1992 to 31 May 2022 from 14 locations around the New Zealand coastline, extracted from the OISST data set (https://doi.org/10.25921/RE9P-PT57), as analysed in Bell et al. (2022). Also included are MATLAB .m files to (1) extract daily time series of SST from a local copy of the global OISST netcdf files (bell_etal_extract_OISST.m) and (2) undertake the analysis of marine heatwaves in the sponge_data_oisst_v2.mat subset of these data (bell_etal_analyze_OISST.m), as performed in Bell et al. (2022). We acknowledge the NOAA OI SST V2 High Resolution Dataset provided by the NOAA PSL, Boulder, Colorado, USA, from their website at https://psl.noaa.gov
DOI: 10.26180/20744875
title: Figure 1

description: Raw and supporting data for Figure 1 in <strong>Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology</strong>
DOI: 10.26180/20744875.v1
title: Figure 1

description: Raw and supporting data for Figure 1 in <strong>Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology</strong>
DOI: 10.6084/m9.figshare.21153487
title: Figure S5

description: Raw and supporting data for Figure S5 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology
DOI: 10.6084/m9.figshare.21153487.v1
title: Figure S5

description: Raw and supporting data for Figure S5 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology
DOI: 10.6084/m9.figshare.21153499
title: Figure S6

description: Raw and supporting data for Figure S6 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21153499.v1
title: Figure S6

description: Raw and supporting data for Figure S6 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159028
title: Figure S3

description: Raw and supporting data for Figure S3 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159028.v1
title: Figure S3

description: Raw and supporting data for Figure S3 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159034
title: Figure S2

description: Raw and supporting data for Figure S2 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159034.v1
title: Figure S2

description: Raw and supporting data for Figure S2 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159040
title: Figure S1

description: Raw and supporting data for Figure S1 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159040.v1
title: Figure S1

description: Raw and supporting data for Figure S1 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.5281/zenodo.7112241
title: Scalable mixed model approaches for set-based association studies on large-scale categorical data analysis and its application to 450k exome sequencing data in UK Biobank

description: The ongoing release of large-scale sequencing data in the UK Biobank allows for identifying associations between rare variants and complex traits. SAIGE-GENE+ is a valid approach to conducting set-based association tests for quantitative and binary traits. However, for ordinal categorical phenotypes, applying SAIGE-GENE+ with treating the trait as quantitative or binarizing the trait can cause inflated type I error rates or power loss. In this study, we propose a novel method for rare-variant association tests, POLMM-GENE, in which a proportional odds logistic mixed model was used to characterize ordinal categorical phenotypes while adjusting for sample relatedness. POLMM-GENE fully utilizes the categorical nature of phenotypes and thus can well control type I error rates while remaining powerful. In the analyses of UK Biobank 450k whole exome-sequencing data for 5 ordinal categorical traits, POLMM-GENE identified 54 gene-phenotype associations.
DOI: 10.5281/zenodo.7112240
title: Scalable mixed model approaches for set-based association studies on large-scale categorical data analysis and its application to 450k exome sequencing data in UK Biobank

description: The ongoing release of large-scale sequencing data in the UK Biobank allows for identifying associations between rare variants and complex traits. SAIGE-GENE+ is a valid approach to conducting set-based association tests for quantitative and binary traits. However, for ordinal categorical phenotypes, applying SAIGE-GENE+ with treating the trait as quantitative or binarizing the trait can cause inflated type I error rates or power loss. In this study, we propose a novel method for rare-variant association tests, POLMM-GENE, in which a proportional odds logistic mixed model was used to characterize ordinal categorical phenotypes while adjusting for sample relatedness. POLMM-GENE fully utilizes the categorical nature of phenotypes and thus can well control type I error rates while remaining powerful. In the analyses of UK Biobank 450k whole exome-sequencing data for 5 ordinal categorical traits, POLMM-GENE identified 54 gene-phenotype associations.
DOI: 10.6084/m9.figshare.21159043
title: Figure 4

description: Raw and supporting data for Figure 4 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159043.v1
title: Figure 4

description: Raw and supporting data for Figure 4 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159046
title: Figure 6

description: Raw and supporting data for Figure 6 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159046.v1
title: Figure 6

description: Raw and supporting data for Figure 6 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159070
title: Figure 3

description: Raw and supporting data for Figure 3 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21159070.v1
title: Figure 3

description: Raw and supporting data for Figure 3 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21162952
title: Figure S4

description: Raw and supporting data for Figure S4 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology
DOI: 10.6084/m9.figshare.21162952.v1
title: Figure S4

description: Raw and supporting data for Figure S4 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology
DOI: 10.6084/m9.figshare.21200485
title: Figure 2

description: Raw and supporting data for Figure 2 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21200512
title: Figure 5

description: Raw and supporting data for Figure 5 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21200512.v1
title: Figure 5

description: Raw and supporting data for Figure 5 in Genetic model of UBA5 deficiency highlights involvement of both peripheral and central nervous systems and identifies widespread mitochondrial pathology.
DOI: 10.6084/m9.figshare.21219941
title: Casava Image Dataset2

description: Cassava disease
DOI: 10.26274/79bm-t171
title: Integrated coral rubble vulnerability map of the Great Barrier Reef (RRAP Rubble Stabilisation, QUT)
DOI: 10.25958/qph0-t493
title: Semi-structured interviews exploring the attitudes and perceptions toward miscarriage in Western Australian women that have not experienced a pregnancy loss

description: Data is from 18 semi-structured interviews exploring the attitudes and perceptions toward miscarriage in Western Australian Women that have not experienced a pregnancy loss.
DOI: 10.6084/m9.figshare.21220037
title: Gusev, E.; Martynenko, N. Description of two new species of the genus Mallomonas from section Mallomonas (Synurales, Chrysophyceae) in the tropics. TABLE S1

description: This dataset comtains basic characteristics of localities and distribution of <em>M.</em> <em>pseudoelongata </em>and<em> M. pseudocorymbosa</em> in Viet Nam.
DOI: 10.6084/m9.figshare.21220037.v1
title: Gusev, E.; Martynenko, N. Description of two new species of the genus Mallomonas from section Mallomonas (Synurales, Chrysophyceae) in the tropics. TABLE S1

description: This dataset comtains basic characteristics of localities and distribution of <em>M.</em> <em>pseudoelongata </em>and<em> M. pseudocorymbosa</em> in Viet Nam.
DOI: 10.5281/zenodo.7118284
title: Gedeotic observations and slip distribution for the 2022 Afghanistan earthquake

description: Gedeotic observations and slip distribution for the 2022 Afghanistan earthquake
DOI: 10.5281/zenodo.7118283
title: Gedeotic observations and slip distribution for the 2022 Afghanistan earthquake

description: Gedeotic observations and slip distribution for the 2022 Afghanistan earthquake