cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/b78hk-k6v02
title: PW1307

description: PW 1307 Pseudomonas aeruginosa PAO1 delta CheA (F7)transposon mutant collection
description: <strong>Tilt Series Date:</strong> 2015-05-29</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -8.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-12/rawdata/</p>PW1307deltaCheA0021.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-12/rawdata/PW1307deltaCheA0021.mrc"
        > <i class="download icon"></i> Download </a></p>

        PW1307deltaCheA0021.rec,  Reconstruction (Pixel Size 1.28 nm), 1.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-05-29-12/3dimage_57535/PW1307deltaCheA0021.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/qwr2f-m4r60
title: TopJ + MPN119

description: Raw data files of TopJ + MPN119
description: <strong>Tilt Series Date:</strong> 2015-04-17</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Batchruntomo</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-17-24/rawdata/</p>atlas10024.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-17-24/rawdata/atlas10024.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas10024.rec,  Reconstruction (Pixel Size 1.56 nm), 444.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-17-24/3dimage_54473/atlas10024.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8rrc5-3t537
title: E. coli EEEE

description: Penicillin lysed E. coli (grown in TB)
description: <strong>Tilt Series Date:</strong> 2015-03-06</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-30/rawdata/</p>EEEENEW0003.mrc,  Tilt Series (Pixel Size 0.27 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-30/rawdata/EEEENEW0003.mrc"
        > <i class="download icon"></i> Download </a></p>

        EEEENEW0003_full.rec,  Reconstruction (Pixel Size 1.08 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-06-30/3dimage_52707/EEEENEW0003_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/427tp-7nc33
title: P41+P41

description: Raw data files of P41+P41
description: <strong>Tilt Series Date:</strong> 2015-04-18</p>
<strong>Data Taken By:</strong> Songye Chen</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1.0°, constant angular increment, dosage: 90.0 eV/Å²,  defocus: -8.0 μm,  magnification: 27500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-17/rawdata/</p>atlas20004.mrc,  Tilt Series (Pixel Size 0.39 nm), 3.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-17/rawdata/atlas20004.mrc"
        > <i class="download icon"></i> Download </a></p>

        atlas20004_part131_2.rec,  Reconstruction (Pixel Size 1.56 nm), 222.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/scy2015-04-18-17/3dimage_54509/atlas20004_part131_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29988385
title: Extended Data (1-4) for Mańko et al.<i>The evolution of an individual-like dispersive stage in colonial siphonophores</i>

description: <b>Extended Data 1. Nexus file for the morphological evolution analysis with Mesquite. Related to Figure 6.</b><br><b>Extended Data 2. Concatenated alignment of 16S and 18S sequences. Related to Figure 6.</b><b>Extended Data 3. Code used to generate plots in Figure 5 and 7.</b><br><b>Extended Data 4. Topology used to constrain the IQTree ML analyses, related to Figure 6.</b>
DOI: 10.22002/hkgb9-ksh35
title: Pombe Cryosections

description: Raw data files of Pombe Cryosections
description: <strong>Tilt Series Date:</strong> 2015-07-31</p>
<strong>Data Taken By:</strong> Matt Swulius</p>
<strong>Species / Specimen:</strong> Schizosaccharomyces pombe</p>
<strong>Strain:</strong> cdc25-22 rlc1-3GFP</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 145.0 eV/Å²,  defocus: -8.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> autoPatch</p>
description: Files available via S3 at ://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-30/rawdata/</p>073105_pombe_cryosection_grid3_hole7_tomo0004.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-30/rawdata/073105_pombe_cryosection_grid3_hole7_tomo0004.mrc"
        > <i class="download icon"></i> Download </a></p>

        073105_pombe_cryosection_grid3_hole7_tomo0004.rec,  Reconstruction (Pixel Size 2.0 nm), 890.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mst2015-07-31-30/3dimage_59975/073105_pombe_cryosection_grid3_hole7_tomo0004.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.6084/m9.figshare.29988385.v1
title: Extended Data (1-4) for Mańko et al.<i>The evolution of an individual-like dispersive stage in colonial siphonophores</i>

description: <b>Extended Data 1. Nexus file for the morphological evolution analysis with Mesquite. Related to Figure 6.</b><br><b>Extended Data 2. Concatenated alignment of 16S and 18S sequences. Related to Figure 6.</b><b>Extended Data 3. Code used to generate plots in Figure 5 and 7.</b><br><b>Extended Data 4. Topology used to constrain the IQTree ML analyses, related to Figure 6.</b>
DOI: 10.22002/sm0ky-2z898
title: E. coli QQQQ

description: Penicillin lysed E. coli QQQQ (grown in TB medium)
description: <strong>Tilt Series Date:</strong> 2015-03-05</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> RP 437</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: 6.0 μm,  magnification: 42000x. </p>
<strong>Microscope:</strong> Janelia Titan</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-05-20/rawdata/</p>QQQQMarTITAN0016.mrc,  Tilt Series (Pixel Size 0.27 nm), 1.7 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-05-20/rawdata/QQQQMarTITAN0016.mrc"
        > <i class="download icon"></i> Download </a></p>

        QQQQMarTITAN0016_full.rec,  Reconstruction (Pixel Size 1.08 nm), 688.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2015-03-05-20/3dimage_52587/QQQQMarTITAN0016_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8g837-hgf53
title: HeLa cells + thymidine

description: thymidine is used to synchronize HeLa cell division at cytokinesis stage.
description: <strong>Tilt Series Date:</strong> 2015-06-16</p>
<strong>Data Taken By:</strong> Shrawan kumar Mageswaran</p>
<strong>Species / Specimen:</strong> HeLa cells</p>
<strong>Strain:</strong> ATCC</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: -8.0 μm,  magnification: 18000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-8/rawdata/</p>hela_thym_montage0008.mrc,  Tilt Series (Pixel Size 0.6 nm), 3.4 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-8/rawdata/hela_thym_montage0008.mrc"
        > <i class="download icon"></i> Download </a></p>

        hela_thym_montage0008_full.rec,  Reconstruction (Pixel Size 2.4 nm), 445.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/smk2015-06-16-8/3dimage_58472/hela_thym_montage0008_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/znf5r-kzf59
title: Caulobacter crescentus

description: Yves Brun strain 2845: CB15-del-hfsD. 2 of 5, holdfast mutants from Yves Brun, had to convert data type with Priism, good reconstruction. possible paired filament; mini-invaginations in membrane; wrinkled top and bottom membranes; misshapen vesicle-like structures
description: <strong>Tilt Series Date:</strong> 2005-10-04</p>
<strong>Data Taken By:</strong> Prabha Dias</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 0.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft, Priism</p>
<strong>Collaborators and Roles:</strong> specimen prep, data collection & processing: D. Prabha Dias</p>
<strong>Purification / Growth Conditions / Treatment:</strong> PYE media (RB Jensen protocol);  5ml cultures in 14ml tubes; exponential phase; see DPD notebook Sep 28-30, 2005</p>
<strong>Sample Preparation:</strong> box 642, grid 1; MeOH-washed Quantifoil R2/1; 10nm gold on grids & in suspension; offset -1, blot 1 sec, drain 1 sec; see DPD notebook Sep 30, 2005</p>
  pdd2005-10-04-2_slicer5292.jpg: DIviding pdd2005-10-04-2_slicer5294.jpg: S-layer .  Vesicle pdd2005-10-04-2_slicer5296.jpg: Peptidoglycan pdd2005-10-04-2_slicer5298.jpg: FIlament pdd2005-10-04-2_slicer5301.jpg: Filament pdd2005-10-04-2_slicer5302.jpg: Filament pdd2005-10-04-2_slicer5305.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2005-10-04-2/rawdata/</p>YB2845_05Oct04t02.mrc,  Tilt Series (Pixel Size 1.2 nm), 1.9 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2005-10-04-2/rawdata/YB2845_05Oct04t02.mrc"
        > <i class="download icon"></i> Download </a></p>

        YB2845_05Oct04t02_2.mrc,  Tilt Series (Pixel Size 1.2 nm), 84.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2005-10-04-2/rawdata/YB2845_05Oct04t02_2.mrc"
        > <i class="download icon"></i> Download </a></p>

        05Oct04t02.rec,  Reconstruction (Pixel Size 2.4 nm), 356.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2005-10-04-2/3dimage_247/05Oct04t02.rec"
        > <i class="download icon"></i> Download </a></p>

        05Oct04t02_full.rec,  Reconstruction (Pixel Size 2.4 nm), 943.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/pdd2005-10-04-2/3dimage_248/05Oct04t02_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/xtycv-54067
title: Treponema primitia

description: Treponema primitia.  The rest of the files are in ~/Images/050911ribosome exclusion zone, REZ
description: <strong>Tilt Series Date:</strong> 2005-09-11</p>
<strong>Data Taken By:</strong> Gavin Murphy</p>
<strong>Species / Specimen:</strong> Treponema primitia</p>
<strong>Strain:</strong> ZAS-2</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 30.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Microscope:</strong> 0</p>
<strong>Acquisition Software:</strong> Undefined</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod, bsoft</p>
<strong>Collaborators and Roles:</strong> Cells provided by Eric Matson, Jared Leadbetter; Data collected and processed by Gavin Murphy</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells grown in standard media around exponential growth.  Removed from anaerobic tube with syringe. Uncentrifuged.</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity...</p>
  T1_050911_tilt.jpg: * associated to rawdata T1_050911_rec.jpg: file associated to 3D Image #45 T1_050911_seg.jpg: file associated to 3D Image #45 gme2005-09-11-1_slicer5236.jpg: Pilli .  REZ .  Unknown gme2005-09-11-1_slicer9400.jpg: best example of a flagellar motor .  Treponema primitia .  snapshot by Megan gme2005-09-11-1_slicer9404.jpg: flagellar bundle in cytoplasm? .  Treponema .  snapshot by Megan gme2005-09-11-1_slicer9405.jpg: flagellar bundle in cytoplasm? .  Treponema .  snapshot by Megan
description: Files available via S3 at ttps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-1/rawdata/</p>T1whole_S552G2_22.5kx13d130e.mrc.gz,  Tilt Series (Pixel Size 0.98 nm), 836.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-1/rawdata/T1whole_S552G2_22.5kx13d130e.mrc.gz"
        > <i class="download icon"></i> Download </a></p>

        T1B2sPadRotSiz.mrc,  Reconstruction (Pixel Size 0.0 nm), 243.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-1/3dimage_45/T1B2sPadRotSiz.mrc"
        > <i class="download icon"></i> Download </a></p>

        T1B2sBB_28_part.pif,  Reconstruction (Pixel Size 0.0 nm), 352.3 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-1/3dimage_46/T1B2sBB_28_part.pif"
        > <i class="download icon"></i> Download </a></p>

        T1_050911_seg.tif,  file associated to 3D Image #45, 697.9 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/gme2005-09-11-1/file_111/T1_050911_seg.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/997s2-tp446
title: Alongum

description: Alongum_noOM
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-108/rawdata/</p>ecoliNoOM0002.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-108/rawdata/ecoliNoOM0002.mrc"
        > <i class="download icon"></i> Download </a></p>

        ecoliNoOM0002_part122_2.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-108/3dimage_56933/ecoliNoOM0002_part122_2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/2tfhx-bfn20
title: Campylobacter jejuni

description: Session notes:  Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-07-15</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Campylobacter jejuni</p>
<strong>Strain:</strong> subsp. jejuni 81116</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.5°, 64.5°), step: 1.5°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 5.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-07-15-7_slicer9633.jpg: DNA? .  Comb .  Campylobacter jejuni mba2011-07-15-7_slicer9634.jpg: DNA? .  Comb .  Campylobacter jejuni
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-7/rawdata/</p>11jul15a_flgQ_0013.st,  Tilt Series (Pixel Size 0.512 nm), 726.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-7/rawdata/11jul15a_flgQ_0013.st"
        > <i class="download icon"></i> Download </a></p>

        11jul15a_flgQ_0013.rec,  Reconstruction (Pixel Size 1.024 nm), 67.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-07-15-7/3dimage_22855/11jul15a_flgQ_0013.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/jq4f2-hvf64
title: Vibrio fischeri

description: Session notes: Vibrio fischeri WT flagella, binned 4x total then filtered 0.28 (= 4.6nm resolution cutoff) Tilt series notes:  Tomogram notes:
description: <strong>Tilt Series Date:</strong> 2011-12-17</p>
<strong>Data Taken By:</strong> Morgan Beeby</p>
<strong>Species / Specimen:</strong> Vibrio fischeri</p>
<strong>Strain:</strong> ES114</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: 10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> </p>
  mba2011-12-17-29_slicer7027.jpg: peptidoglycan .  filament mba2011-12-17-29_slicer7028.jpg: filament mba2011-12-17-29_slicer7032.jpg: unknown mba2011-12-17-29_slicer7035.jpg: filament
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-17-29/rawdata/</p>11dec17c_WTVFischeri_0020.st,  Tilt Series (Pixel Size 0.632 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mba2011-12-17-29/rawdata/11dec17c_WTVFischeri_0020.st"
        > <i class="download icon"></i> Download </a></p>

        11dec17c_WTVFischeri_0020.rec,  Reconstruction (Pixel Size 0.644 nm), 144.1 MB  
        
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DOI: 10.22002/5s1vb-c4c97
title: Alongum

description: Alongum_protK
description: <strong>Tilt Series Date:</strong> 2012-05-20</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Acetonema longum</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-30.0°, 30.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> uploadraptor</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> WesleyChen helped remove layers</p>
<strong>Purification / Growth Conditions / Treatment:</strong> sporulation media</p>
<strong>Sample Preparation:</strong> quantifoil grid R2/2, 20nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2012-05-20-132/rawdata/</p>ecoliProtK0011.mrc,  Tilt Series (Pixel Size 0.95 nm), 842.5 MB  
        
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        ecoliProtK0011_part102_22.rec,  Reconstruction (Pixel Size 1.95 nm), 1.0 GB  
        
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