cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7271499
title: A patient-centric modeling framework captures recovery from SARS-CoV-2 infection

description: The biology driving individual patient responses to SARS-CoV-2 infection remains ill understood. Here, we developed a patient-centric framework leveraging detailed longitudinal phenotyping data and covering a year post-disease onset, from 215 SARS-CoV-2 infected subjects with differing disease severities. Our analyses revealed distinct “systemic recovery” profiles, with specific progression and resolution of the inflammatory, immune, metabolic and clinical responses. In particular, we found a strong inter- and intra-patient temporal covariation of innate immune cell numbers, kynurenine metabolites and lipid metabolites, which highlighted candidate immunologic and metabolic pathways influencing the restoration of homeostasis, the risk of death and that of long COVID. Based on these data, we identified a composite signature predictive of systemic recovery at the patient level, using a joint model on cellular and molecular parameters measured soon after disease onset. New predictions can be generated using the online tool http://shiny.mrc- bsu.cam.ac.uk/apps/covid-19-systemic-recovery-prediction-app, designed to test our findings prospectively.
description: We thank NIHR BioResource volunteers for their participation, and gratefully acknowledge NIHR BioResource centres, NHS Trusts and staff for their contribution. We thank the National Institute for Health and Care Research, NHS Blood and Transplant, and Health Data Research UK as part of the Digital Innovation Hub Programme. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health and Social Care. We are also grateful for the generous support of CVC Capital Partners, the Evelyn Trust (20/75), UKRI COVID Immunology Consortium, Addenbrooke's Charitable Trust (12/20A), the UKRI/NIHR through the UK Coronavirus Immunology Consortium (UK-CIC), and the Botnar Research Centre for Child Health (BRCCH) for their financial support. H.R. would like to thank the Lopez–Loreta Foundation for their support. J.N., J.W. and E.H. would like to acknowledge the Australian Federal Government's Medical Research Future Fund (MRFF-ARAPC ARG76435), the Western Australian Department of Health, the Spinnaker Health Research Foundation and the McCusker Charitable Foundation for their support and contributions to this research program. K.G.C.S. acknowledges support from Wellcome Investigator and Collaborative Awards (200871/Z/16/ Z; 219506/Z/19/Z) and a Medical Research Council Programme Grant (MR/L019027). We would also like to thank the NIHR Cambridge Clinic Research Facility outreach team for enrollment of patients; and the NIHR Cambridge Biomedical Research Centre Cell Phenotyping Hub and the CRUK Cambridge Institute flow cytometry core facility for their support with flow and mass cytometry.
DOI: 10.5281/zenodo.7277164
title: A patient-centric modelling framework captures recovery from SARS-CoV-2 infection

description: The biology driving individual patient responses to SARS-CoV-2 infection remains ill understood. Here, we developed a patient-centric framework leveraging detailed longitudinal phenotyping data and covering a year post-disease onset, from 215 SARS-CoV-2 infected subjects with differing disease severities. Our analyses revealed distinct “systemic recovery” profiles, with specific progression and resolution of the inflammatory, immune cell, metabolic and clinical responses. In particular, we found a strong inter- and intra-patient temporal covariation of innate immune cell numbers, kynurenine metabolites and lipid metabolites, which highlighted candidate immunologic and metabolic pathways influencing the restoration of homeostasis, the risk of death and that of long COVID. Based on these data, we identified a composite signature predictive of systemic recovery at the patient level, using a joint model on cellular and molecular parameters measured soon after disease onset. New predictions can be generated using the online tool http://shiny.mrc-bsu.cam.ac.uk/apps/covid-19-systemic-recovery-prediction-app, designed to test our findings prospectively.
description: We thank NIHR BioResource volunteers for their participation, and gratefully acknowledge NIHR BioResource centres, NHS Trusts and staff for their contribution. We thank the National Institute for Health and Care Research, NHS Blood and Transplant, and Health Data Research UK as part of the Digital Innovation Hub Programme. The views expressed are those of the author(s) and not necessarily those of the NHS, the NIHR or the Department of Health and Social Care. We are also grateful for the generous support of CVC Capital Partners, the Evelyn Trust (20/75), UKRI COVID Immunology Consortium, Addenbrooke's Charitable Trust (12/20A), the UKRI/NIHR through the UK Coronavirus Immunology Consortium (UK-CIC), the COVID-19 Rapid Response DCF (RG93172/HESS/40558) and the Botnar Research Centre for Child Health (BRCCH) for their financial support. H.R. would like to thank the Lopez–Loreta Foundation for their support. J.N., J.W. and E.H. would like to acknowledge the Australian Federal Government's Medical Research Future Fund (MRFF-ARAPC ARG76435), the Western Australian Department of Health, the Spinnaker Health Research Foundation and the McCusker Charitable Foundation for their support and contributions to this research program. K.G.C.S. acknowledges support from Wellcome Investigator and Collaborative Awards (200871/Z/16/ Z; 219506/Z/19/Z) and a Medical Research Council Programme Grant (MR/L019027). We would also like to thank the NIHR Cambridge Clinic Research Facility outreach team for enrollment of patients; and the NIHR Cambridge Biomedical Research Centre Cell Phenotyping Hub and the CRUK Cambridge Institute flow cytometry core facility for their support with flow and mass cytometry.
DOI: 10.25384/sage.21230177
title: sj-xlsx-4-tct-10.1177_15330338221124658 - Supplemental material for In Vitro and in Vivo Study of the Effect of Osteogenic Pulsed Electromagnetic Fields on Breast and Lung Cancer Cells

description: Supplemental material, sj-xlsx-4-tct-10.1177_15330338221124658 for In Vitro and in Vivo Study of the Effect of Osteogenic Pulsed Electromagnetic Fields on Breast and Lung Cancer Cells by Mike Y. Chen, Jing Li, Nianli Zhang and 
Erik I. Waldorff, James T. Ryaby, Philip Fedor, Yongsheng Jia, Yujun Wang in Technology in Cancer Research & Treatment
DOI: 10.25384/sage.21230189.v1
title: sj-csv-2-mcr-10.1177_10775587221126777 – Supplemental material for Toward a Uniform Classification of Nurse Practitioner Scope of Practice Laws

description: Supplemental material, sj-csv-2-mcr-10.1177_10775587221126777 for Toward a Uniform Classification of Nurse Practitioner Scope of Practice Laws by Benjamin J. McMichael and Sara Markowitz in Medical Care Research and Review
DOI: 10.25384/sage.24596606
title: sj-R-17-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-R-17-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.24707715.v1
title: sj-xlsx-1-hol-10.1177_09596836231211874 – Supplemental material for A sequence of abrupt climatic fluctuations in the north-eastern Caribbean related to the 8.2 ka event

description: Supplemental material, sj-xlsx-1-hol-10.1177_09596836231211874 for A sequence of abrupt climatic fluctuations in the north-eastern Caribbean related to the 8.2 ka event by Rolf Vieten, Sophie F Warken, Amos Winter, Denis Scholz, Davide Zanchettin, David Black and Matthew Lachniet in The Holocene
DOI: 10.25384/sage.21176078.v1
title: sj-do-1-hpq-10.1177_13591053221124374 – Supplemental material for The associations of pandemic-related difficulties with depressive symptoms and psychological growth among American older adults: Social support as moderators

description: Supplemental material, sj-do-1-hpq-10.1177_13591053221124374 for The associations of pandemic-related difficulties with depressive symptoms and psychological growth among American older adults: Social support as moderators by Mingqi Fu, Jing Guo and Qilin Zhang in Journal of Health Psychology
DOI: 10.25384/sage.24596615.v1
title: sj-R-20-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-R-20-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.24596627
title: sj-R-24-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-R-24-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.24596567
title: sj-xlsx-4-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-xlsx-4-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.21176020.v1
title: sj-sav-4-hpq-10.1177_13591053221124748 – Supplemental material for Health psychology and behavioral medicine researchers in Canada: An environmental scan

description: Supplemental material, sj-sav-4-hpq-10.1177_13591053221124748 for Health psychology and behavioral medicine researchers in Canada: An environmental scan by Kharah M Ross, Ryan Hoggan, Tavis S Campbell, Jennifer Gordon, Vincent Gosselin Boucher, Eric Kim, Kim Lavoie, Wolfgang Linden, Joshua A Rash, Codie R Rouleau, Sherry H Stewart and Justin Presseau in Journal of Health Psychology
DOI: 10.25384/sage.24596576
title: sj-inp-7-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-inp-7-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.21230351.v1
title: sj-xlsx-1-aop-10.1177_10600280221126971 – Supplemental material for Association of Statin Adherence With the Development of Nonalcoholic Fatty Liver Disease: A Nested Case-Control Study Using a Japanese Claims Database

description: Supplemental material, sj-xlsx-1-aop-10.1177_10600280221126971 for Association of Statin Adherence With the Development of Nonalcoholic Fatty Liver Disease: A Nested Case-Control Study Using a Japanese Claims Database by Chihiro Nakagawa, Satoshi Yokoyama and Kouichi Hosomi in Annals of Pharmacotherapy
DOI: 10.25384/sage.21231014
title: sj-mat-1-pid-10.1177_09544070221124716 – Acceleration signal simulation induced by single obstacle crossings by means of nonlinear, block-oriented models for an automotive comfort simulator

description: sj-mat-1-pid-10.1177_09544070221124716 for Acceleration signal simulation induced by single obstacle crossings by means of nonlinear, block-oriented models for an automotive comfort simulator by Kevin Reichel and Martin Meywerk in Proceedings of the Institution of Mechanical Engineers, Part D: Journal of Automobile Engineering
DOI: 10.25384/sage.22816669.v1
title: sj-xlsx-1-jvi-10.1177_02646196231172071 – Supplemental material for Comprehension of a multimodal book by children with visual impairments

description: sj-xlsx-1-jvi-10.1177_02646196231172071 for Comprehension of a multimodal book by children with visual impairments by Dannyelle Valente, Lola Chennaz, Dominique Archambault, Solène Négrerie, Sophie Blain, Anna Rita Galiano and Edouard Gentaz in British Journal of Visual Impairment
DOI: 10.25384/sage.24517606
title: sj-spv-5-hpq-10.1177_13591053231207295 – for The relationship between suicidal behavior and perceived stress: The role of cognitive emotional regulation and problematic alcohol use in Spanish adolescents

description: sj-spv-5-hpq-10.1177_13591053231207295 for The relationship between suicidal behavior and perceived stress: The role of cognitive emotional regulation and problematic alcohol use in Spanish adolescents by Queralt Ballabrera, Maria José Gómez-Romero, Andres Chamarro and Joaquín T Limonero in Journal of Health Psychology
DOI: 10.25384/sage.24596594
title: sj-R-13-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-R-13-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.21176087.v1
title: sj-smcl-4-hpq-10.1177_13591053221124374 – Supplemental material for The associations of pandemic-related difficulties with depressive symptoms and psychological growth among American older adults: Social support as moderators

description: Supplemental material, sj-smcl-4-hpq-10.1177_13591053221124374 for The associations of pandemic-related difficulties with depressive symptoms and psychological growth among American older adults: Social support as moderators by Mingqi Fu, Jing Guo and Qilin Zhang in Journal of Health Psychology
DOI: 10.25384/sage.21155331
title: sj-zip-1-acr-10.1177_02841851221125994 - Supplemental material for Intra-individual comparison of lumbar spine CT, abdomen-pelvis contrast enhanced CT, and low-dose chest CT for bone density measurement

description: Supplemental material, sj-zip-1-acr-10.1177_02841851221125994 for Intra-individual comparison of lumbar spine CT, abdomen-pelvis contrast enhanced CT, and low-dose chest CT for bone density measurement by Jina Park, Bo Ram Kim, Eugene Lee and Joon Woo Lee in Acta Radiologica
DOI: 10.25384/sage.22945884.v1
title: sj-xlsx-1-sgo-10.1177_21582440231175150 – Supplemental material for Nurturing Employee Engagement at Workplace and Organizational Innovation in Time of Crisis With Moderating Effect of Servant Leadership

description: Supplemental material, sj-xlsx-1-sgo-10.1177_21582440231175150 for Nurturing Employee Engagement at Workplace and Organizational Innovation in Time of Crisis With Moderating Effect of Servant Leadership by Ali Falah Dalain in SAGE Open
DOI: 10.25384/sage.22945902
title: sj-xlsx-2-msj-10.1177_13524585231171517 – Supplemental material for Several serum lipid metabolites are associated with relapse risk in pediatric-onset multiple sclerosis

description: Supplemental material, sj-xlsx-2-msj-10.1177_13524585231171517 for Several serum lipid metabolites are associated with relapse risk in pediatric-onset multiple sclerosis by Akash Virupakshaiah, Dimitrios C Ladakis, Bardia Nourbakhsh, Pavan Bhargava, Sonam Dilwali, Vinicius Schoeps, Kamil Borkowski, John W Newman and Emmanuelle Waubant in Multiple Sclerosis Journal
DOI: 10.25384/sage.22959801
title: sj-txt-3-ctj-10.1177_17407745231174544 – Supplemental material for Overview of modern approaches for identifying and evaluating heterogeneous treatment effects from clinical data

description: Supplemental material, sj-txt-3-ctj-10.1177_17407745231174544 for Overview of modern approaches for identifying and evaluating heterogeneous treatment effects from clinical data by Ilya Lipkovich, David Svensson, Bohdana Ratitch and Alex Dmitrienko in Clinical Trials
DOI: 10.25384/sage.24521722
title: sj-dta-2-eup-10.1177_14651165231210943 - Supplemental material for The effect of European integration on economic redistribution in Central and Eastern Europe

description: Supplemental material, sj-dta-2-eup-10.1177_14651165231210943 for The effect of European integration on economic redistribution in Central and Eastern Europe by Bilyana Petrova and Aleksandra Sznajder Lee in European Union Politics
DOI: 10.25384/sage.24521722.v1
title: sj-dta-2-eup-10.1177_14651165231210943 - Supplemental material for The effect of European integration on economic redistribution in Central and Eastern Europe

description: Supplemental material, sj-dta-2-eup-10.1177_14651165231210943 for The effect of European integration on economic redistribution in Central and Eastern Europe by Bilyana Petrova and Aleksandra Sznajder Lee in European Union Politics
DOI: 10.25384/sage.24596558.v1
title: sj-xlsx-1-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-xlsx-1-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.24821146
title: Supplemental Material - Correcting Myopia: Effect of Information Provision on Support for Preparedness Policy

description: Supplemental Material for Correcting Myopia: Effect of Information Provision on Support for Preparedness Policy by Nicholas Weller in Political Research Quarterly
DOI: 10.25384/sage.24721253.v1
title: sj-html-8-eup-10.1177_14651165231217699 - Supplemental material for Mission partly accomplished: <i>European Union Politics</i> at 25

description: Supplemental material, sj-html-8-eup-10.1177_14651165231217699 for Mission partly accomplished: <i>European Union Politics</i> at 25 by Alessia Invernizzi, Ann-Cathrin Klöckner and Gerald Schneider in European Union Politics
DOI: 10.25384/sage.24721271.v1
title: sj-xlsx-1-pdp-10.1177_10935266231213464 – Supplemental material for Diminished TMEM100 Expression in a Newborn With Acinar Dysplasia and a Novel TBX4 Variant: A Case Report

description: Supplemental material, sj-xlsx-1-pdp-10.1177_10935266231213464 for Diminished TMEM100 Expression in a Newborn With Acinar Dysplasia and a Novel TBX4 Variant: A Case Report by Przemyslaw Szafranski, Silvia Patrizi, Tomasz Gambin, Bushra Afzal, Emily Schlotterbeck, Justyna A. Karolak, Gail Deutsch, Drucilla Roberts and Paweł Stankiewicz in Pediatric and Developmental Pathology
DOI: 10.25384/sage.24821104
title: sj-csv-2-hpq-10.1177_13591053231213305 – Supplemental material for Post-traumatic stress in older, community-dwelling adults with hypertension during the COVID-19 pandemic: An investigation of pre-pandemic sociodemographic, health, and vascular and inflammatory biomarker predictors

description: Supplemental material, sj-csv-2-hpq-10.1177_13591053231213305 for Post-traumatic stress in older, community-dwelling adults with hypertension during the COVID-19 pandemic: An investigation of pre-pandemic sociodemographic, health, and vascular and inflammatory biomarker predictors by Emily A Troyer, Jordan N Kohn, Monica Feliz R Castillo, Judith D Lobo, Yaniel Ramirez Sanchez, Gavrila Ang, Anthony Cirilo, Juan Andrew Leal, Christopher Pruitt, Amanda L Walker, Kathleen L Wilson, Meredith A Pung, Laura S Redwine and Suzi Hong in Journal of Health Psychology
DOI: 10.25384/sage.21191289.v1
title: sj-xlsx-1-ajr-10.1177_19458924221085157 - Supplemental material for Topical Administration of Carvacrol Improves Healing in Nasal Septal Perforation: An Experimental Animal Study

description: Supplemental material, sj-xlsx-1-ajr-10.1177_19458924221085157 for Topical Administration of Carvacrol Improves Healing in Nasal Septal Perforation: An Experimental Animal Study by Senem Çengel Kurnaz, Nilüfer Kuruca, Dilek Güvenç, Muhammed Taha Kaya and Tolga Güvenç in American Journal of Rhinology & Allergy
DOI: 10.25384/sage.13259437.v2
title: Supplemental Material, hardness_test_data_final - Experimental investigation, modeling and optimization study on the mechanical properties of B<sub>4</sub>C<sub>p</sub>/MWCNT/epoxy multi-scale hybrid composite

description: Supplemental Material, hardness_test_data_final for Experimental investigation, modeling and optimization study on the mechanical properties of B<sub>4</sub>C<sub>p</sub>/MWCNT/epoxy multi-scale hybrid composite by Mustafa Taşyürek in Polymers and Polymer Composites
DOI: 10.25384/sage.21186781
title: sj-xlsx-5-orm-10.1177_10944281221124947 - Supplemental material for Advancing Reproducibility and Accountability of Unsupervised Machine Learning in Text Mining: Importance of Transparency in Reporting Preprocessing and Algorithm Selection

description: Supplemental material, sj-xlsx-5-orm-10.1177_10944281221124947 for Advancing Reproducibility and Accountability of Unsupervised Machine Learning in Text Mining: Importance of Transparency in Reporting Preprocessing and Algorithm Selection by L. Valtonen, Saku J. Mäkinen and Johanna Kirjavainen in Organizational Research Methods
DOI: 10.25384/sage.24596603
title: sj-R-16-orm-10.1177_10944281231215024 - Supplemental material for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching

description: Supplemental material, sj-R-16-orm-10.1177_10944281231215024 for Real Research with Fake Data: A Tutorial on Conducting Computer Simulation for Research and Teaching by Michael C. Sturman in Organizational Research Methods
DOI: 10.25384/sage.21186787.v1
title: sj-ipynb-7-orm-10.1177_10944281221124947 - Supplemental material for Advancing Reproducibility and Accountability of Unsupervised Machine Learning in Text Mining: Importance of Transparency in Reporting Preprocessing and Algorithm Selection

description: Supplemental material, sj-ipynb-7-orm-10.1177_10944281221124947 for Advancing Reproducibility and Accountability of Unsupervised Machine Learning in Text Mining: Importance of Transparency in Reporting Preprocessing and Algorithm Selection by L. Valtonen, Saku J. Mäkinen and Johanna Kirjavainen in Organizational Research Methods
DOI: 10.25384/sage.24746419.v1
title: sj-xlsx-1-hol-10.1177_09596836231211848 – Supplemental material for An archaeobotanical and stable isotope approach to changing agricultural practices in the NW Mediterranean region around 4000 BC

description: Supplemental material, sj-xlsx-1-hol-10.1177_09596836231211848 for An archaeobotanical and stable isotope approach to changing agricultural practices in the NW Mediterranean region around 4000 BC by Ferran Antolín, Stefanie Jacomet, Raül Soteras, Claudia Gerling, Stefano M Bernasconi, Franziska Follmann, Irka Hajdas, Madalina Jaggi, Ana Jesus, Héctor Martínez-Grau, Francesc Xavier Oms, Brigitte Röder, Bigna L Steiner and Samuel van Willigen in The Holocene
DOI: 10.25384/sage.24746422.v1
title: sj-xlsx-3-hol-10.1177_09596836231211848 – Supplemental material for An archaeobotanical and stable isotope approach to changing agricultural practices in the NW Mediterranean region around 4000 BC

description: Supplemental material, sj-xlsx-3-hol-10.1177_09596836231211848 for An archaeobotanical and stable isotope approach to changing agricultural practices in the NW Mediterranean region around 4000 BC by Ferran Antolín, Stefanie Jacomet, Raül Soteras, Claudia Gerling, Stefano M Bernasconi, Franziska Follmann, Irka Hajdas, Madalina Jaggi, Ana Jesus, Héctor Martínez-Grau, Francesc Xavier Oms, Brigitte Röder, Bigna L Steiner and Samuel van Willigen in The Holocene
DOI: 10.25384/sage.24760530
title: Supplemental Material - Towards a study of everyday geographic information: Bringing the everyday into view

description: Supplemental Material Towards a study of everyday geographic information: Bringing the everyday into view by Stefano De Sabbata, KatyBennett, Zoe Gardner in Environment and Planning B: Urban Analytics and City Science