cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.748777
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.748777.v1
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.749619.v19
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.747616
title: Data for the ms "Evolution of growth rates and resilience to massive mortality events"

description: Data from simulations and code for ms "Evolution of growth rates and resilience to massive mortality events" submitted to the Journal of Fish Biology. The code clearly documents analyses and plots.
DOI: 10.6084/m9.figshare.747616.v1
title: Data for the ms "Evolution of growth rates and resilience to massive mortality events"

description: Data from simulations and code for ms "Evolution of growth rates and resilience to massive mortality events" submitted to the Journal of Fish Biology. The code clearly documents analyses and plots.
DOI: 10.6084/m9.figshare.748776.v2
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.749619.v20
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.747608
title: Genetic profiling of the isoprenoid and sterol biosynthesis pathways of Trypanosoma cruzi

description: These data include figures, supplementary material, and other data (sequences, alignments, phylogenetic trees) corresponding to a manuscript that is being submitted for publication. The manuscript describes the genetic profiling, by re-sequencing, of two key metabolic pathways of Trypanosoma cruzi, the causative agent of Chagas Disease.
DOI: 10.6084/m9.figshare.748784.v1
title: Article PDF Filesizes

description: A small bit of my thesis. Why are BMC PDFs so significantly larger on average than PLOS or Zootaxa PDFs?
DOI: 10.6084/m9.figshare.747508
title: Optical micrographs of porous silicon

description: Optical micrographs of microfabricated porous silicon chips.
DOI: 10.6084/m9.figshare.748776.v1
title: Gaussian Job Archive for C30H17(1+)

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.747504
title: Gaussian Job Archive for C15H15FN2O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.747505
title: Gaussian Job Archive for C15H15FN2O2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.747508.v1
title: Optical micrographs of porous silicon

description: Optical micrographs of microfabricated porous silicon chips.
DOI: 10.6084/m9.figshare.747608.v1
title: Genetic profiling of the isoprenoid and sterol biosynthesis pathways of Trypanosoma cruzi

description: These data include figures, supplementary material, and other data (sequences, alignments, phylogenetic trees) corresponding to a manuscript that is being submitted for publication. The manuscript describes the genetic profiling, by re-sequencing, of two key metabolic pathways of Trypanosoma cruzi, the causative agent of Chagas Disease.
DOI: 10.6084/m9.figshare.747504.v1
title: Gaussian Job Archive for C15H15FN2O2S

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.749619.v21
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.747505.v1
title: Gaussian Job Archive for C15H15FN2O2S2

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.749619.v22
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.747485
title: Emergency response times, response provider and patient satisfaction data for individuals in three Peruvian health care facilities.

description: File 1: Service quality questionnaire and promptness of health care formulary (Spanish) used to collect data from patients involved in road traffic incidents in three different Peruvian cities between August – September 2009. File 2: Service quality questionnaire and promptness of health care data collected from patients involved in road traffic incidents in three different Peruvian cities between August – September 2009. City: 0 ‘Lima’ 1 ‘Pucallpa’ 2 ‘Ayacucho’; type of health care facility (HCF): 0 'Private' 1 'Public'.
DOI: 10.6084/m9.figshare.747485.v1
title: Emergency response times, response provider and patient satisfaction data for individuals in three Peruvian health care facilities.

description: File 1: Service quality questionnaire and promptness of health care formulary (Spanish) used to collect data from patients involved in road traffic incidents in three different Peruvian cities between August – September 2009. File 2: Service quality questionnaire and promptness of health care data collected from patients involved in road traffic incidents in three different Peruvian cities between August – September 2009. City: 0 ‘Lima’ 1 ‘Pucallpa’ 2 ‘Ayacucho’; type of health care facility (HCF): 0 'Private' 1 'Public'.
DOI: 10.6084/m9.figshare.749619.v23
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.749619.v24
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.747471
title: The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters

description: The large Neotropical family Gonyleptidae comprises nearly 820 species divided into 16 subfamilies. We used the information available in the literature and combined it with an intensive search for ecological, behavioural and chemical data to infer the phylogeny of the Gonyleptidae. We included 28 species belonging to 14 of the 16 gonyleptid subfamilies in the ingroup and four species belonging to the families Cosmetidae, Stygnidae and Manaosbiidae in the outgroup. We performed the analyses using equally weighted characters and coded 63 characters comprising 153 states, which makes this the largest non-morphological, non-molecular phylogenetic data matrix published to date.The results show that the monophyly of Gonyleptidae is equivocal because Metasarcinae is placed at a basal polytomy with the outgroups Cosmetidae and Stygnidae. Gonyleptinae, Pachylinae and Progonyleptoidellinae are polyphyletic groups, but the remaining subfamilies are monophyletic and have several synapomorphies. Related article in press in Cladistics. See DOI.
DOI: 10.6084/m9.figshare.749619.v26
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.746992
title: A global meta-analysis of the ecological impacts of non-native crayfish

description: Twardochleb, Laura A., Olden, Julian D., Eric R. Larson. 2013. A global meta-analysis of the ecological impacts of non-native crayfish. <em>Freshwater Science</em> 32:1367-1382. <strong>PLEASE email J. Olden (olden@uw.edu) if you use this data in your research. </strong> <strong><br></strong> <strong>Abstract</strong><br>Non-native crayfish have been widely introduced and are a major threat to freshwater biodiversity and ecosystem functioning. Despite documentation of the ecological impacts of non-native crayfish from over three decades of case studies, no comprehensive synthesis has quantitatively tested for their general and/or species-specific effects on recipient ecosystems. Here, we provide the first global meta-analysis of the ecological impacts of non-native crayfish under experimental settings to compare effects among species and across levels of ecological organization. Our meta-analysis revealed strong, but variable, negative ecological effects of non-native crayfish with strikingly consistent effects among introduced species. We found that in experimental settings non-native crayfish generally affect all levels of freshwater food webs, ranging from reducing the abundance of basal resources like aquatic macrophytes, to preying on invertebrates like snails and mayflies, to reducing abundances and growth of amphibians and fish. Contrary to our predictions, we did not find that non-native crayfish consistently increase algal biomass. Furthermore, when compared directly to native crayfish, non-native crayfish showed a slight tendency to exhibit larger positive effects on growth of algae and larger negative effects on invertebrates and fish, although there was considerable variability among effect sizes. In conclusion, our study supports the assessment of crayfish as strong interactors in food webs that, by way of their polytrophic, generalist feeding habits, have significant impacts across native taxa. We suggest that species identity may be less important than extrinsic attributes of the recipient ecosystems in determining impacts of non-native crayfish. We identify some under studied and emerging non-native crayfish that would benefit from further studies and suggest expanding research to encompass more comparisons of native vs. non-native crayfish and different geographic regions, but we note that the consistent and general negative effects of non-native crayfish warrant efforts to discourage their introduction beyond native ranges.
DOI: 10.6084/m9.figshare.747233
title: Systematic Review of Honey as a topical agent for Minor Thermal Burns

description: Honey has been used as traditional antibacterial and healing compound for many centuries. The review tries to determine if there is any clinical evidence behind its use in minor thermal burns and how effective it is when compared to other compounds regularly used in medical practice like sulfadiazine.
DOI: 10.6084/m9.figshare.747470
title: The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters

description: Dataset for phylogenetic analysis including data from behavior, ecology and chemical molecules. Should be suitable to analysis under Mesquite and TNT softwares. Same dataset used in the manuscript "Caetano, D.S. and Machado G. The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters. 2013. Cladistics, in press.
DOI: 10.6084/m9.figshare.747471.v3
title: The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters

description: The large Neotropical family Gonyleptidae comprises nearly 820 species divided into 16 subfamilies. We used the information available in the literature and combined it with an intensive search for ecological, behavioural and chemical data to infer the phylogeny of the Gonyleptidae. We included 28 species belonging to 14 of the 16 gonyleptid subfamilies in the ingroup and four species belonging to the families Cosmetidae, Stygnidae and Manaosbiidae in the outgroup. We performed the analyses using equally weighted characters and coded 63 characters comprising 153 states, which makes this the largest non-morphological, non-molecular phylogenetic data matrix published to date.The results show that the monophyly of Gonyleptidae is equivocal because Metasarcinae is placed at a basal polytomy with the outgroups Cosmetidae and Stygnidae. Gonyleptinae, Pachylinae and Progonyleptoidellinae are polyphyletic groups, but the remaining subfamilies are monophyletic and have several synapomorphies. Related article in press in Cladistics. See DOI.
DOI: 10.6084/m9.figshare.746992.v1
title: A global meta-analysis of the ecological impacts of non-native crayfish

description: Twardochleb, Laura A., Olden, Julian D., Eric R. Larson. 2013. A global meta-analysis of the ecological impacts of non-native crayfish. <em>Freshwater Science</em> 32:1367-1382. <strong>PLEASE email J. Olden (olden@uw.edu) if you use this data in your research. </strong> <strong><br></strong> <strong>Abstract</strong><br>Non-native crayfish have been widely introduced and are a major threat to freshwater biodiversity and ecosystem functioning. Despite documentation of the ecological impacts of non-native crayfish from over three decades of case studies, no comprehensive synthesis has quantitatively tested for their general and/or species-specific effects on recipient ecosystems. Here, we provide the first global meta-analysis of the ecological impacts of non-native crayfish under experimental settings to compare effects among species and across levels of ecological organization. Our meta-analysis revealed strong, but variable, negative ecological effects of non-native crayfish with strikingly consistent effects among introduced species. We found that in experimental settings non-native crayfish generally affect all levels of freshwater food webs, ranging from reducing the abundance of basal resources like aquatic macrophytes, to preying on invertebrates like snails and mayflies, to reducing abundances and growth of amphibians and fish. Contrary to our predictions, we did not find that non-native crayfish consistently increase algal biomass. Furthermore, when compared directly to native crayfish, non-native crayfish showed a slight tendency to exhibit larger positive effects on growth of algae and larger negative effects on invertebrates and fish, although there was considerable variability among effect sizes. In conclusion, our study supports the assessment of crayfish as strong interactors in food webs that, by way of their polytrophic, generalist feeding habits, have significant impacts across native taxa. We suggest that species identity may be less important than extrinsic attributes of the recipient ecosystems in determining impacts of non-native crayfish. We identify some under studied and emerging non-native crayfish that would benefit from further studies and suggest expanding research to encompass more comparisons of native vs. non-native crayfish and different geographic regions, but we note that the consistent and general negative effects of non-native crayfish warrant efforts to discourage their introduction beyond native ranges.
DOI: 10.6084/m9.figshare.747471.v2
title: The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters

description: The large Neotropical family Gonyleptidae comprises nearly 820 species divided into 16 subfamilies. We used the information available in the literature and combined it with an intensive search for ecological, behavioural and chemical data to infer the phylogeny of the Gonyleptidae. We included 28 species belonging to 14 of the 16 gonyleptid subfamilies in the ingroup and four species belonging to the families Cosmetidae, Stygnidae and Manaosbiidae in the outgroup. We performed the analyses using equally weighted characters and coded 63 characters comprising 153 states, which makes this the largest non-morphological, non-molecular phylogenetic data matrix published to date.The results show that the monophyly of Gonyleptidae is equivocal because Metasarcinae is placed at a basal polytomy with the outgroups Cosmetidae and Stygnidae. Gonyleptinae, Pachylinae and Progonyleptoidellinae are polyphyletic groups, but the remaining subfamilies are monophyletic and have several synapomorphies. Related article in press in Cladistics. See DOI.
DOI: 10.6084/m9.figshare.749619.v25
title: Drosophila dissection training movies

description: These films were generated as a public resource at the Manchester Fly Facility. This facility supports <em>Drosophila</em> research through infrastructure & services, advice, training, and opportunities for collaboration. To learn more about us, see the link below.
DOI: 10.6084/m9.figshare.746990
title: Genotype data from highland and lowland maize

description: GBS and 55K SNP data from 94 maize lines from highland and lowland Mexico. Included are passport data for the samples as well.
DOI: 10.6084/m9.figshare.747233.v1
title: Systematic Review of Honey as a topical agent for Minor Thermal Burns

description: Honey has been used as traditional antibacterial and healing compound for many centuries. The review tries to determine if there is any clinical evidence behind its use in minor thermal burns and how effective it is when compared to other compounds regularly used in medical practice like sulfadiazine.
DOI: 10.6084/m9.figshare.747470.v1
title: The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters

description: Dataset for phylogenetic analysis including data from behavior, ecology and chemical molecules. Should be suitable to analysis under Mesquite and TNT softwares. Same dataset used in the manuscript "Caetano, D.S. and Machado G. The ecological tale of Gonyleptidae (Arachnida, Opiliones) evolution: phylogeny of a Neotropical lineage of armoured harvestmen using ecological, behavioural and chemical characters. 2013. Cladistics, in press.
DOI: 10.6084/m9.figshare.746990.v1
title: GBS of highland and lowland maize

description: GBS data from 94 maize lines from highland and lowland Mexico.
DOI: 10.6084/m9.figshare.746964
title: OXIDATION OF LIGNIN-CARBOHYDRATE MODELS. I. OXIDATION OF ARYL GLUCOSIDES BY THE LACCASE FROM TRAMETES VERSICOLOR

description: The laccase oxidation of an aryl glucoside proceeds through a radical cation and yields glucose and the aaryloxy radical, which dimerizes.
DOI: 10.6084/m9.figshare.746964.v1
title: OXIDATION OF LIGNIN-CARBOHYDRATE MODELS. I. OXIDATION OF ARYL GLUCOSIDES BY THE LACCASE FROM TRAMETES VERSICOLOR

description: The laccase oxidation of an aryl glucoside proceeds through a radical cation and yields glucose and the aaryloxy radical, which dimerizes.
DOI: 10.6084/m9.figshare.746968
title: Popgen Stats from Hufford et al. 2012 Nat. Gen.

description: Summary statistics for 10kb windows genome-wide and for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012: http://www.nature.com/ng/journal/v44/n7/full/ng.2309.html See details in the paper for criteria for calling SNPs, data used for statistics, etc. Columns are: locus: GRM name of gene in the filtered gene set S: number of Segregating sites ThetaW: Watterson's estimate of theta (per locus) ThetaPi: nucleotide diversity (per locus) ThetaH: Fay and Wu (2000) estimator (per locus) TajD: Tajima's D seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.
DOI: 10.6084/m9.figshare.746968.v1
title: Gene Popgen Stats from Hufford et al. 2012 Nat. Gen.

description: Summary statistics for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012: http://www.nature.com/ng/journal/v44/n7/full/ng.2309.html See details in the paper for criteria for calling SNPs, data used for statistics, etc. Columns are: locus: GRM name of gene in the filtered gene set S: number of Segregating sites ThetaW: Watterson's estimate of theta (per locus) ThetaPi: nucleotide diversity (per locus) ThetaH: Fay and Wu (2000) estimator (per locus) TajD: Tajima's D seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.
DOI: 10.6084/m9.figshare.746939
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746968.v2
title: Gene Popgen Stats from Hufford et al. 2012 Nat. Gen.

description: Summary statistics for genes in the maize v2 filtered gene set. Data are from Hufford et al. 2012: http://www.nature.com/ng/journal/v44/n7/full/ng.2309.html See details in the paper for criteria for calling SNPs, data used for statistics, etc. Columns are: locus: GRM name of gene in the filtered gene set S: number of Segregating sites ThetaW: Watterson's estimate of theta (per locus) ThetaPi: nucleotide diversity (per locus) ThetaH: Fay and Wu (2000) estimator (per locus) TajD: Tajima's D seqbp: # of bp sequenced. this should be used as the denominator to calculate per bp. values of the above statistics.
DOI: 10.6084/m9.figshare.746939.v1
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746937
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746938
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746938.v1
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746937.v1
title: Gaussian Job Archive for C18H23NO3

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.746968.v3
title: Popgen Stats from Hufford et al. 2012 Nat. Gen.

description: Summary statistics for the maize v2 filtered gene set. Data are from Hufford et al. 2012: http://www.nature.com/ng/journal/v44/n7/full/ng.2309.html See details in the paper for criteria for calling SNPs, data used for statistics, etc.
DOI: 10.6084/m9.figshare.746922
title: ESM for Chapter Seven

description: These files are the electronic supplimentary material for chapter seven of my doctoral thesis.