cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.qpjv2z
title: Occurrence Download

description: A dataset containing 245667 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2024-10-26",
 "EventDate is less than or equal to 2024-11-25",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 245667 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025245-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8z83gg
title: Occurrence Download

description: A dataset containing 2139 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oikopleuridae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2139 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025282-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.27872963
title: Additional file 1 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 1: Supplementary Table 1: Summary of sequencing libraries used for genome assembly of the Atlantic acroporids. All data and assemblies are available at NCBI BioProject PRJNA473816.
DOI: 10.6084/m9.figshare.27872963.v1
title: Additional file 1 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 1: Supplementary Table 1: Summary of sequencing libraries used for genome assembly of the Atlantic acroporids. All data and assemblies are available at NCBI BioProject PRJNA473816.
DOI: 10.6084/m9.figshare.27872966
title: Additional file 2 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 2: Supplementary Table 2: Genomic resources used to compare gene content and syntenic arrangement. Genome assemblies and their predicted proteins were downloaded from sources noted below. Taxonomy is ranked as Subphylum, Class and Order.
DOI: 10.6084/m9.figshare.27872966.v1
title: Additional file 2 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 2: Supplementary Table 2: Genomic resources used to compare gene content and syntenic arrangement. Genome assemblies and their predicted proteins were downloaded from sources noted below. Taxonomy is ranked as Subphylum, Class and Order.
DOI: 10.6084/m9.figshare.27872969.v1
title: Additional file 3 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 3: Supplementary Table 3: Assembly statistics for the genome assemblies of the acroporids compared in this study.
DOI: 10.6084/m9.figshare.27872972
title: Additional file 4 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 4: Supplementary Table 4: K-mer genome size estimates. Three different k-mer based genome size prediction tools were used: GenomeScope2, findGSE and kmergenie. The first two tools used the k-mer distribution histogram generated by Jellyfish with a k-mer size of 119. bp = base pairs.
DOI: 10.6084/m9.figshare.27872969
title: Additional file 3 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 3: Supplementary Table 3: Assembly statistics for the genome assemblies of the acroporids compared in this study.
DOI: 10.6084/m9.figshare.27872972.v1
title: Additional file 4 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 4: Supplementary Table 4: K-mer genome size estimates. Three different k-mer based genome size prediction tools were used: GenomeScope2, findGSE and kmergenie. The first two tools used the k-mer distribution histogram generated by Jellyfish with a k-mer size of 119. bp = base pairs.
DOI: 10.6084/m9.figshare.27872975
title: Additional file 5 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 5: Supplementary Table 5: Assembly statistics showing completeness and contiguity of Acropora cervicornis HG0582 [123] and HG0005 assemblies (this study). Mb = megabases. BUSCO = Benchmarking Universal Single-Copy Orthologs.
DOI: 10.6084/m9.figshare.27872975.v1
title: Additional file 5 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 5: Supplementary Table 5: Assembly statistics showing completeness and contiguity of Acropora cervicornis HG0582 [123] and HG0005 assemblies (this study). Mb = megabases. BUSCO = Benchmarking Universal Single-Copy Orthologs.
DOI: 10.6084/m9.figshare.27872978
title: Additional file 6 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 6: Supplementary Table 6: Comparison of Acropora palmata Hi-C (pseudo) chromosomes that are homologous to A. cervicornis linkage groups. Mb = megabases.
DOI: 10.6084/m9.figshare.27872978.v1
title: Additional file 6 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 6: Supplementary Table 6: Comparison of Acropora palmata Hi-C (pseudo) chromosomes that are homologous to A. cervicornis linkage groups. Mb = megabases.
DOI: 10.6084/m9.figshare.27872981
title: Additional file 7 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 7: Supplementary Table 7: Number of structural variants identified between Acropora palmata and A. cervicornis genome assemblies. N/A = not applicable.
DOI: 10.6084/m9.figshare.27872984
title: Additional file 8 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 8: Supplementary Table 8: Outlier genes between Acropora palmata and A. cervicornis in terms of sequence identity. Percent identity was calculated using rustybam [140] in windows corresponding with gene coordinates using whole genome PAF alignments derived from minimap2 [92]. Genes were considered outliers if their percent identity was below Q1 – (3*IQR).
DOI: 10.6084/m9.figshare.27872981.v1
title: Additional file 7 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 7: Supplementary Table 7: Number of structural variants identified between Acropora palmata and A. cervicornis genome assemblies. N/A = not applicable.
DOI: 10.6084/m9.figshare.27872984.v1
title: Additional file 8 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 8: Supplementary Table 8: Outlier genes between Acropora palmata and A. cervicornis in terms of sequence identity. Percent identity was calculated using rustybam [140] in windows corresponding with gene coordinates using whole genome PAF alignments derived from minimap2 [92]. Genes were considered outliers if their percent identity was below Q1 – (3*IQR).
DOI: 10.6084/m9.figshare.27872987
title: Additional file 9 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 9: Supplementary Table 9: Tracing the 21 cnidarian ancestral linkage groups as defined by Simakov et al. 2022 in acroporid corals. x = chromosomal fusion. Acroporids share the same ALG architecture except for ALG L which is fused to G in A. millepora only. AHYA = Acropora hyacinthus , APAL = A. palmata , AMIL = A. millepora , ACER = A. cervicornis , CJAR = Catalaphyllia jardinei , NVEC = Nematostella vectensis , SSPP = Scolanthus sp. , XSPP = Xenia sp. , HVUL = Hydra vulgaris , HSYM = Hydractinia symbiolongicarpus , CXAM = Cassiopea xamachana.
DOI: 10.6084/m9.figshare.27872987.v1
title: Additional file 9 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 9: Supplementary Table 9: Tracing the 21 cnidarian ancestral linkage groups as defined by Simakov et al. 2022 in acroporid corals. x = chromosomal fusion. Acroporids share the same ALG architecture except for ALG L which is fused to G in A. millepora only. AHYA = Acropora hyacinthus , APAL = A. palmata , AMIL = A. millepora , ACER = A. cervicornis , CJAR = Catalaphyllia jardinei , NVEC = Nematostella vectensis , SSPP = Scolanthus sp. , XSPP = Xenia sp. , HVUL = Hydra vulgaris , HSYM = Hydractinia symbiolongicarpus , CXAM = Cassiopea xamachana.
DOI: 10.6084/m9.figshare.27872990
title: Additional file 10 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 10: Supplementary Table 10: Summary of repeat content in Acropora palmata and A. cervicornis genome assemblies. Bolded transposable elements are abundant among all acroporids.
DOI: 10.6084/m9.figshare.27872990.v1
title: Additional file 10 of Chromosome-level genome assemblies and genetic maps reveal heterochiasmy and macrosynteny in endangered Atlantic Acropora

description: Additional file 10: Supplementary Table 10: Summary of repeat content in Acropora palmata and A. cervicornis genome assemblies. Bolded transposable elements are abundant among all acroporids.
DOI: 10.15468/dl.nuj49h
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Caragana opulens Kom."
 ]
}

 The dataset includes 338 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025283-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n6m48c
title: Occurrence Download

description: A dataset containing 64643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Paracalanidae",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 64643 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025284-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nccar6
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Dominican Republic",
 "TaxonKey is Coenobita clypeatus (Fabricius, 1787)"
 ]
}

 The dataset includes 187 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025285-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.48mb35
title: Occurrence Download

description: A dataset listing the 177 species recorded in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Geometry POLYGON((109.37923 1.75579,109.46728 1.75579,109.46728 1.91186,109.37923 1.91186,109.37923 1.75579))",
 "Geometry POLYGON((109.12575 1.53963,109.68367 1.61936,109.54113 2.11746,109.18525 2.07834,109.02339 1.66787,109.12575 1.53963))"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset's 177 records were derived from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025278-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mea2nx
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Camellia atrothea Hung T.Chang, H.S.Wang & B.H.Chen"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025286-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9xx2j
title: Occurrence Download

description: A dataset containing 1973086 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 {
 "or" : [
 "Country is Norway",
 "Country is Svalbard and Jan Mayen"
 ]
 }
 ]
}

 The dataset includes 1973086 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038761-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktm5yz
title: Occurrence Download

description: A dataset containing 829 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is CHN.29_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 829 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038803-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ysmft
title: Occurrence Download

description: A dataset containing 1125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespidae",
 "Year is 2008",
 "Continent is North America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1125 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038802-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9qt4de
title: Occurrence Download

description: A dataset containing 9540 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pinus banksiana)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 9540 records from 207 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038804-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ngt54q
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colubrina asiatica",
 "Country is Mauritius",
 "HasCoordinate is true"
 ]
}

 The dataset includes 5 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038806-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wmb3h6
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Colubrina asiatica",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038805-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bppg9p
title: Occurrence Download

description: A dataset containing 1289 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Platydemus manokwari"
 ]
}

 The dataset includes 1289 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038809-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ckpvbr
title: Occurrence Download

description: A dataset containing 11499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespidae",
 "Year is 2009",
 "Continent is Europe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11499 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038808-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17240033
title: MgB2_collective_mode_dataset
DOI: 10.5281/zenodo.17240034
title: MgB2_collective_mode_dataset
DOI: 10.15468/dl.b8k4eg
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koelreuteria paniculata",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038813-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atmee6
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koelreuteria paniculata",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 8 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038814-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x5z5gk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koelreuteria paniculata",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038812-250920141307145/datasets/export for details.
DOI: 10.15468/dl.9fhzp6
title: Occurrence Download

description: A dataset containing 8536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pomacea canaliculata"
 ]
}

 The dataset includes 8536 records from 101 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038811-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.43e93a
title: Occurrence Download

description: A dataset containing 44 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.80310831123015 -9.213346684778397,-72.80310831123015 -9.213346684778397,-72.80310831123015 -5.213346684778397,-76.80310831123015 -5.213346684778397,-76.80310831123015 -9.213346684778397))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Uncaria"
 ]
}

 The dataset includes 44 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038815-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v3jfds
title: Occurrence Download

description: A dataset containing 2088 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Leopardus pardalis",
 "Year 1000-2025"
 ]
}

 The dataset includes 2088 records from 61 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038816-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acx7as
title: Occurrence Download

description: A dataset containing 963 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespidae",
 "Year is 2009",
 "Continent is North America",
 "HasCoordinate is true"
 ]
}

 The dataset includes 963 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038817-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9j7kef
title: Occurrence Download

description: A dataset containing 97 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Koelreuteria paniculata",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 97 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038818-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fv8kwp
title: Occurrence Download

description: A dataset containing 11606 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Vespidae",
 "Year is 2010",
 "Continent is Europe",
 "HasCoordinate is true"
 ]
}

 The dataset includes 11606 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038819-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8k2w6y
title: Occurrence Download

description: A dataset containing 121419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Material sample, Specimen, Fossil, Living Specimen)",
 "Continent is one of (North America, South America)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Guazuma ulmifolia"
 ]
}

 The dataset includes 121419 records from 574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038783-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7h3k3z
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Poranopsis paniculata",
 "Country is Cuba",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038820-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.