cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.16491730.v1
title: Morphometry of bovine blastocysts produced in vitro in culture media with antioxidants cysteamine or oily extract of Lippia origanoides

description: ABSTRACT This study aimed to evaluate the ultrastructural morphometry of bovine embryos produced in vitro grown at different concentrations of antioxidants. After in vitro maturation and fertilization, the presumptive zygotes were assigned into five treatments. T1) without the addition of any antioxidants (negative control); T2) addition of 50μM/mL cysteamine; and T3, T4 and T5) adding 2.5μg/mL, 5.0μg/mL or 10.0μg/mL of the antioxidants derived from the oily extract from Lippia origanoides, respectively. On D7 of culture, the embryos in the blastocyst stage were fixed and prepared for electron transmission microscopy. These were evaluated for the proportion of cytoplasm-to-nucleus, cytoplasm-to-mitochondria, cytoplasm-to-vacuoles, cytoplasm-to-autophagic vacuoles and cytoplasm-to-lipid droplets. Blastocysts cultured in media containing oily extract of Lippia origanoides presented morphological characteristics such as high cell:mitochondria ratio and low cell:vacuoles and cell:autophagic vacuole ratio, possibly been morphological indicators of embryonic quality. Inner cell mass (ICM) from blastocysts cultured in media without any antioxidants had the highest cell:vacuole ratio. Similar results were found in the trophectoderm (TE) cells of blastocysts from treatment 2. Embryo culture media supplemented with antioxidants derived from Lippia origanoides oil produced embryos with a higher cytoplasmic proportion of organelles, such as mitochondria. Also, treatments without any antioxidants or with the addition of cysteamine presented cytoplasmic vacuolization, a characteristic related to production of poor-quality embryos.
DOI: 10.6084/m9.figshare.16491764.v1
title: Gas exchange and leaf area of banana plants under salt stress inoculated with growth-promoting bacteria

description: ABSTRACT Banana orchards in arid and semiarid regions require the use of irrigation. However, the presence of high concentration of salts in water can impair the development of plants, requiring the evaluation of new technologies to mitigate the effects of stress. The objective of this study was to evaluate gas exchange and leaf area in banana seedlings of the cultivar Prata Catarina inoculated with strains of Bacillus spp. under different electrical conductivities of irrigation water. The experiment was carried out in a greenhouse at Embrapa Tropical Agroindustry, Fortaleza, Ceará state, Brazil. The design used was in randomized blocks, in a 4 × 4 factorial scheme, with the first factor being the inoculation treatments: without any application; slow-release fertilizer; Strain 186 and Strain 109, and the second factor being the electrical conductivity of irrigation water (0.5; 1.5; 3.0; 4.5 dS m-1), in five blocks and each plot consisting of three plants. The electrical conductivity of irrigation water negatively influenced the gas exchange of banana cv. Prata Catarina in the vegetative stage, during the 89 days of cultivation. The Bacillus spp. strains 186 and 109 did not improve the gas exchange and leaf area of plants under salinity conditions.
DOI: 10.6084/m9.figshare.16491764
title: Gas exchange and leaf area of banana plants under salt stress inoculated with growth-promoting bacteria

description: ABSTRACT Banana orchards in arid and semiarid regions require the use of irrigation. However, the presence of high concentration of salts in water can impair the development of plants, requiring the evaluation of new technologies to mitigate the effects of stress. The objective of this study was to evaluate gas exchange and leaf area in banana seedlings of the cultivar Prata Catarina inoculated with strains of Bacillus spp. under different electrical conductivities of irrigation water. The experiment was carried out in a greenhouse at Embrapa Tropical Agroindustry, Fortaleza, Ceará state, Brazil. The design used was in randomized blocks, in a 4 × 4 factorial scheme, with the first factor being the inoculation treatments: without any application; slow-release fertilizer; Strain 186 and Strain 109, and the second factor being the electrical conductivity of irrigation water (0.5; 1.5; 3.0; 4.5 dS m-1), in five blocks and each plot consisting of three plants. The electrical conductivity of irrigation water negatively influenced the gas exchange of banana cv. Prata Catarina in the vegetative stage, during the 89 days of cultivation. The Bacillus spp. strains 186 and 109 did not improve the gas exchange and leaf area of plants under salinity conditions.
DOI: 10.6084/m9.figshare.16491988
title: Genetic parameters and genetic trends of conformation and management traits in Dairy Gir cattle

description: ABSTRACT The objective of this study was to estimate genetic parameters and genetic trends of different conformation and management traits regularly measured within the context of the National Dairy Gir Breeding Program (PNMGL). The estimation of genetic and residual variances for each trait was performed using average information restricted maximum likelihood (AI-REML) procedure in AIREMLF90 program software. The population was divided into three subpopulations constituted by measured females (with phenotype records), all females, and males. Linear regressions were applied for each trait, considering two periods of birth (1st period: 1938-1996; 2nd period: 1997-2012). The estimated heritability of conformation and management traits varied from 0.01 to 0.53, denoting a perspective of genetic improvement through selection and corrective matings for purebred Dairy Gir populations. The average genetic changes in conformation and management traits were, in general, variable and inexpressive, showing that the selection of Dairy Gir may have had been directed essentially to increase milk yield. The analysis of the two periods of birth indicated that some linear traits present progress (although inexpressive) in the 2nd period (more recent period).
DOI: 10.6084/m9.figshare.16491988.v1
title: Genetic parameters and genetic trends of conformation and management traits in Dairy Gir cattle

description: ABSTRACT The objective of this study was to estimate genetic parameters and genetic trends of different conformation and management traits regularly measured within the context of the National Dairy Gir Breeding Program (PNMGL). The estimation of genetic and residual variances for each trait was performed using average information restricted maximum likelihood (AI-REML) procedure in AIREMLF90 program software. The population was divided into three subpopulations constituted by measured females (with phenotype records), all females, and males. Linear regressions were applied for each trait, considering two periods of birth (1st period: 1938-1996; 2nd period: 1997-2012). The estimated heritability of conformation and management traits varied from 0.01 to 0.53, denoting a perspective of genetic improvement through selection and corrective matings for purebred Dairy Gir populations. The average genetic changes in conformation and management traits were, in general, variable and inexpressive, showing that the selection of Dairy Gir may have had been directed essentially to increase milk yield. The analysis of the two periods of birth indicated that some linear traits present progress (although inexpressive) in the 2nd period (more recent period).
DOI: 10.6084/m9.figshare.16492013
title: Genetic parameters and selection of biofortified lettuce genotypes based on selection indices

description: ABSTRACT Obtaining biofortified vegetables with an emphasis on lettuce is a tool to improve the nutritional status of the population. Selection indices can maximize the simultaneous selection of good agronomic traits and high carotenoid levels. The objective of this study was to estimate the genetic parameters and efficiency of different indices in selecting genotypes of biofortified lettuce with high concentrations of carotenoids and favorable agronomic traits. Statistical analyses were performed on 91 genotypes belonging to the vegetable germplasm bank of the Federal University of Uberlândia, Brazil. The variables analyzed were the chlorophyll index of the leaves, plant diameter, stem diameter, and number of leaves per plant. The values found for narrow sense heritability (h²) ranged from 89.63% (stem diameter) to 96.05% (chlorophyll), showing a high magnitude. The Smith-Hazel index, sum of ranks by the Mulamba & Mock index, direct and indirect selection, and Williams base index were used to predict the selection gains. A total of 17 individuals were selected using the selection methodologies. The Smith-Hazel, Williams, and Mulamba & Mock indices were efficient in showing good direct gains for the evaluated traits. Thirteen genotypes were selected for all indices presenting suitable agronomic traits, which show promise for advancing generations within the breeding program to obtain biofortified lettuce strains.
DOI: 10.6084/m9.figshare.16492013.v1
title: Genetic parameters and selection of biofortified lettuce genotypes based on selection indices

description: ABSTRACT Obtaining biofortified vegetables with an emphasis on lettuce is a tool to improve the nutritional status of the population. Selection indices can maximize the simultaneous selection of good agronomic traits and high carotenoid levels. The objective of this study was to estimate the genetic parameters and efficiency of different indices in selecting genotypes of biofortified lettuce with high concentrations of carotenoids and favorable agronomic traits. Statistical analyses were performed on 91 genotypes belonging to the vegetable germplasm bank of the Federal University of Uberlândia, Brazil. The variables analyzed were the chlorophyll index of the leaves, plant diameter, stem diameter, and number of leaves per plant. The values found for narrow sense heritability (h²) ranged from 89.63% (stem diameter) to 96.05% (chlorophyll), showing a high magnitude. The Smith-Hazel index, sum of ranks by the Mulamba & Mock index, direct and indirect selection, and Williams base index were used to predict the selection gains. A total of 17 individuals were selected using the selection methodologies. The Smith-Hazel, Williams, and Mulamba & Mock indices were efficient in showing good direct gains for the evaluated traits. Thirteen genotypes were selected for all indices presenting suitable agronomic traits, which show promise for advancing generations within the breeding program to obtain biofortified lettuce strains.
DOI: 10.6084/m9.figshare.16492189
title: Standardization of a rapid quadruplex PCR method for the simultaneous detection of bovine, buffalo, Salmonella spp., and Listeria monocytogenes DNA in milk

description: ABSTRACT The objective of the present study was to Standardize a Polymerase Chain Reaction (PCR) protocol for the authentication of bovine and buffalo milk, and to detect the presence of Salmonella spp. and Listeria monocytogenes. For this, the target DNA was extracted, mixed, and subjected to a PCR assay. Milk samples were defrauded and experimentally contaminated with microorganisms to assess the detection of target DNA at different times of cultivation, bacterial titers, and concentration of genetic material. In addition, the protocol was tested with DNA extracted directly from food, without a pre-enrichment step. The proposed quadruplex PCR showed good accuracy in identifying target DNA sequences. It was possible to simultaneously identify all DNA sequences at the time of inoculation (0h), when the samples were contaminated with 2 CFU/250mL and with 6h of culture when the initial inoculum was 1 CFU/250mL. It was also possible to directly detect DNA sequences from the food when it was inoculated with 3 CFU/mL bacteria. Thus, the proposed methodology showed satisfactory performance, optimization of the analysis time, and a potential for the detection of microorganisms at low titers, which can be used for the detection of fraud and contamination.
DOI: 10.6084/m9.figshare.16492189.v1
title: Standardization of a rapid quadruplex PCR method for the simultaneous detection of bovine, buffalo, Salmonella spp., and Listeria monocytogenes DNA in milk

description: ABSTRACT The objective of the present study was to Standardize a Polymerase Chain Reaction (PCR) protocol for the authentication of bovine and buffalo milk, and to detect the presence of Salmonella spp. and Listeria monocytogenes. For this, the target DNA was extracted, mixed, and subjected to a PCR assay. Milk samples were defrauded and experimentally contaminated with microorganisms to assess the detection of target DNA at different times of cultivation, bacterial titers, and concentration of genetic material. In addition, the protocol was tested with DNA extracted directly from food, without a pre-enrichment step. The proposed quadruplex PCR showed good accuracy in identifying target DNA sequences. It was possible to simultaneously identify all DNA sequences at the time of inoculation (0h), when the samples were contaminated with 2 CFU/250mL and with 6h of culture when the initial inoculum was 1 CFU/250mL. It was also possible to directly detect DNA sequences from the food when it was inoculated with 3 CFU/mL bacteria. Thus, the proposed methodology showed satisfactory performance, optimization of the analysis time, and a potential for the detection of microorganisms at low titers, which can be used for the detection of fraud and contamination.
DOI: 10.6084/m9.figshare.16492295
title: Soil classes and properties explain the occurrence and fruit production of Brazil nut

description: ABSTRACT Soil properties and classes can influence the occurrence of plants and the production of Brazil nut fruits and may have a different distribution between sites. This study aimed to evaluate the relationship of plants’ occurrence, production of Brazil nut fruits, and spatial variability of the properties in different soil classes in two Brazil nut stand in the state of Acre, Brazil. The study was conducted in two plots in two native Brazil nut stand, Cachoeira (CP01 and CP02 - plots 1 and 2) and Filipinas (FP01 and FP02 - plots 1 and 2). The soil profiles were described morphologically. Sixty soil samples were collected in each plot. The chemical properties, granulometry, soil density, particle density, and estimated total porosity were determined. The average fruit production was calculated by counting the fruits in a sample of Brazil nut trees. Subsequently, the trees were divided into three classes of production: low (≤1.5 can; the can unit has 18-L, which is able to hold 59 and 77 fruits, respectively, for Cachoeira and Filipinas), medium (1.6 to 3.9 cans), and high (≥4.0 cans). The can unit is the traditional measure of volume in the region and varies according to the locality. Cluster analysis was performed to determine whether there was a difference between Brazil nut stands and soil profiles, and geostatistics was used to evaluate the spatial dependence of soil properties. The highest occurrence of Brazil nut trees with high fruit production (≥4.0 cans) was found in the Latossolo Vermelho Distrófico argissólico (Oxisol) and Argissolo Vermelho-Amarelo Distrófico típico (Ultisol). However, the Argisol also hosted the plants with the lowest productions (≤1.5 can). The pH, total organic carbon, sum of bases, P, N, granulometry, and porosity showed a greater spatial variability, and FP02 showed a greater number of properties with high spatial variability compared to the other areas. Although the occurrence of plants and the production of Brazil nut fruits ( Bertholletia excelsa ) were associated with the classes and the physical and chemical properties of the soil, pyxidium production differed between areas. In general, soil physical properties were limiting factors for Brazil nut production and/or higher tree occurrence. Filipinas environment showed a low fruit production and a greater spatial variability of soil properties compared to Cachoeira.
DOI: 10.6084/m9.figshare.16492295.v1
title: Soil classes and properties explain the occurrence and fruit production of Brazil nut

description: ABSTRACT Soil properties and classes can influence the occurrence of plants and the production of Brazil nut fruits and may have a different distribution between sites. This study aimed to evaluate the relationship of plants’ occurrence, production of Brazil nut fruits, and spatial variability of the properties in different soil classes in two Brazil nut stand in the state of Acre, Brazil. The study was conducted in two plots in two native Brazil nut stand, Cachoeira (CP01 and CP02 - plots 1 and 2) and Filipinas (FP01 and FP02 - plots 1 and 2). The soil profiles were described morphologically. Sixty soil samples were collected in each plot. The chemical properties, granulometry, soil density, particle density, and estimated total porosity were determined. The average fruit production was calculated by counting the fruits in a sample of Brazil nut trees. Subsequently, the trees were divided into three classes of production: low (≤1.5 can; the can unit has 18-L, which is able to hold 59 and 77 fruits, respectively, for Cachoeira and Filipinas), medium (1.6 to 3.9 cans), and high (≥4.0 cans). The can unit is the traditional measure of volume in the region and varies according to the locality. Cluster analysis was performed to determine whether there was a difference between Brazil nut stands and soil profiles, and geostatistics was used to evaluate the spatial dependence of soil properties. The highest occurrence of Brazil nut trees with high fruit production (≥4.0 cans) was found in the Latossolo Vermelho Distrófico argissólico (Oxisol) and Argissolo Vermelho-Amarelo Distrófico típico (Ultisol). However, the Argisol also hosted the plants with the lowest productions (≤1.5 can). The pH, total organic carbon, sum of bases, P, N, granulometry, and porosity showed a greater spatial variability, and FP02 showed a greater number of properties with high spatial variability compared to the other areas. Although the occurrence of plants and the production of Brazil nut fruits ( Bertholletia excelsa ) were associated with the classes and the physical and chemical properties of the soil, pyxidium production differed between areas. In general, soil physical properties were limiting factors for Brazil nut production and/or higher tree occurrence. Filipinas environment showed a low fruit production and a greater spatial variability of soil properties compared to Cachoeira.
DOI: 10.6084/m9.figshare.16492502
title: Teaching and learning the doing of Mathematical Modelling: a semiotic interpretation

description: Abstract: In this paper we investigate the communicational process established in a context whose focus is on teaching and on learning to do mathematical modelling. Our considerations are based on a theoretical framework considering elements of Peircean semiotics associated with an interpretative analysis of three episodes related to classes in a course in Mathematical Modelling in a Mathematics Degree. The conclusion is that from a semiotic point of view the learning about doing mathematical modelling is revealed in the communicational interpretants (commens) that result from the overlap of intentional and effectual interpretants. This overlap hangs on the teacher, the students and the communicational process that is triggered among them in the development of mathematical modelling activities.
DOI: 10.6084/m9.figshare.16492502.v1
title: Teaching and learning the doing of Mathematical Modelling: a semiotic interpretation

description: Abstract: In this paper we investigate the communicational process established in a context whose focus is on teaching and on learning to do mathematical modelling. Our considerations are based on a theoretical framework considering elements of Peircean semiotics associated with an interpretative analysis of three episodes related to classes in a course in Mathematical Modelling in a Mathematics Degree. The conclusion is that from a semiotic point of view the learning about doing mathematical modelling is revealed in the communicational interpretants (commens) that result from the overlap of intentional and effectual interpretants. This overlap hangs on the teacher, the students and the communicational process that is triggered among them in the development of mathematical modelling activities.
DOI: 10.6084/m9.figshare.16492583
title: Comparison of methods for estimating leaf area in pornunça (Manihot sp.)

description: ABSTRACT Leaf area measurements are used in agronomic studies to evaluate plant growth, light interception, photosynthetic rates, and plant transpiration. It constitute an important indicator of crop productivity, for which the evaluation method must be fast, accurate, and of low cost. The objective of this study was to compare different indirect methods to estimate leaf area in pornunça (Manihot sp.). The research was carried out under field conditions from August 2017 to January 2019 in the semiarid region of Pernambuco State, Northeastern Brazil. Three methods were tested: linear dimensions of leaf (length, width, and the number of lobes), digital image, and leaf scanned image, analyzing 150 healthy leaves from 120 plants of pornunça at different growth stages. The criteria used to determine the best model(s) were a high coefficient of determination, low Akaike information criterion, low sum of squares of residuals, and high Willmott index. Independent of the method of determination, the power models showed the best criteria of adequacy for estimating the leaf area of the pornunça. The digital image, using the power model (Y=LW0.77NL0.49, where L and W are the leaf length and width, and NL is the number of lobes in the leaf) was the best non-destructive method for estimating the leaf area in pornunça plants.
DOI: 10.6084/m9.figshare.16492583.v1
title: Comparison of methods for estimating leaf area in pornunça (Manihot sp.)

description: ABSTRACT Leaf area measurements are used in agronomic studies to evaluate plant growth, light interception, photosynthetic rates, and plant transpiration. It constitute an important indicator of crop productivity, for which the evaluation method must be fast, accurate, and of low cost. The objective of this study was to compare different indirect methods to estimate leaf area in pornunça (Manihot sp.). The research was carried out under field conditions from August 2017 to January 2019 in the semiarid region of Pernambuco State, Northeastern Brazil. Three methods were tested: linear dimensions of leaf (length, width, and the number of lobes), digital image, and leaf scanned image, analyzing 150 healthy leaves from 120 plants of pornunça at different growth stages. The criteria used to determine the best model(s) were a high coefficient of determination, low Akaike information criterion, low sum of squares of residuals, and high Willmott index. Independent of the method of determination, the power models showed the best criteria of adequacy for estimating the leaf area of the pornunça. The digital image, using the power model (Y=LW0.77NL0.49, where L and W are the leaf length and width, and NL is the number of lobes in the leaf) was the best non-destructive method for estimating the leaf area in pornunça plants.