cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.10049935
title: A compendium of 3562 human and animal papillomavirus genomes

description: Papillomaviruses (PVs) are a ubiquitous group of DNA viruses that infect a wide range of vertebrate hosts, including human. It is well established that the infection of some PV types (e.g., HPV16 and HPV18) are strongly associated with the occurrence and progression of cancers in human, but it remains elusive how such pathogenicity got evolved at the genomic level. Here we curated and annotated a compendium of 3,562 PV genomes (including 3,329 human PVs and 233 animal PVs) and performed the corresponding comparative genomics analyses.
DOI: 10.5281/zenodo.15920456
title: A compendium of 3562 human and animal papillomavirus genomes

description: Papillomaviruses (PVs) are a ubiquitous group of DNA viruses that infect a wide range of vertebrate hosts, including human. It is well established that the infection of some PV types (e.g., HPV16 and HPV18) are strongly associated with the occurrence and progression of cancers in human, but it remains elusive how such pathogenicity got evolved at the genomic level. Here we curated and annotated a compendium of 3,562 PV genomes (including 3,329 human PVs and 233 animal PVs) and performed the corresponding comparative genomics analyses.
DOI: 10.5281/zenodo.2788280
title: Shapefiles dataset of the Geological Map of the Victoria Quadrangle (H02) of Mercury

description: This dataset contains the shapefiles of the geologic map of the Victoria quadrangle (H02) of Mercury by Galluzzi et al. [2016]. Layer symbology is also provided in the form of a layer package or separate symbology layers that may be compatible only with newer versions of ArcMap. For compatibility, a .style file is also provided.

A thorough description of the map can be found in Galluzzi et al. [2016]. If you use this dataset please cite the work as follows:

V. Galluzzi, L. Guzzetta, F. Ferranti, G. Di Achille, D. A. Rothery & P. Palumbo (2016). Geology of the Victoria quadrangle (H02), Mercury. Journal of Maps, 12, 227-238. doi:10.1080/17445647.2016.1193777
DOI: 10.5281/zenodo.2788281
title: Shapefiles dataset of the Geological Map of the Victoria Quadrangle (H02) of Mercury

description: This dataset contains the shapefiles of the geologic map of the Victoria quadrangle (H02) of Mercury by Galluzzi et al. [2016]. Layer symbology is also provided in the form of a layer package or separate symbology layers that may be compatible only with newer versions of ArcMap. For compatibility, a .style file is also provided.

A thorough description of the map can be found in Galluzzi et al. [2016]. If you use this dataset please cite the work as follows:

V. Galluzzi, L. Guzzetta, F. Ferranti, G. Di Achille, D. A. Rothery & P. Palumbo (2016). Geology of the Victoria quadrangle (H02), Mercury. Journal of Maps, 12, 227-238. doi:10.1080/17445647.2016.1193777
DOI: 10.5281/zenodo.15920731
title: ding-01

description: Corpus ding-01



DinG (Boritchev and Amblard, 2022) annotated in Abstract Meaning Representation.

This directory also contains data statement and annotation guideline of the corpus
DOI: 10.15468/dl.q635yz
title: Occurrence Download

description: A dataset containing 212 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guinea",
 "TaxonKey is Ceiba pentandra"
 ]
}

 The dataset includes 212 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017699-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qczc6p
title: Occurrence Download

description: A dataset containing 334 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eutrema integrifolium"
 ]
}

 The dataset includes 334 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017701-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aybbe5
title: Occurrence Download

description: A dataset containing 17523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (United States of America, Canada)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Larix laricina",
 "Year 1237-2025"
 ]
}

 The dataset includes 17523 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017700-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6datr6
title: Occurrence Download

description: A dataset containing 1265 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Mitopus morio",
 "Geometry POLYGON((-8.00174339329464 54.1998526673513, 0.202120938926891 54.1998526673513, 0.202120938926891 61.2628565887411, -8.00174339329464 61.2628565887411, -8.00174339329464 54.1998526673513))",
 "CoordinateUncertaintyInMeters is 0,101",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1265 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017704-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wuvr35
title: Occurrence Download

description: A dataset containing 14971 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sphaeralcea coccinea"
 ]
}

 The dataset includes 14971 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017703-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.4121/610e707d-b10a-467e-8afe-ead477827914
title: Data underlying the publication "Loss of olfaction reduces caterpillar performance and increases susceptibility to a natural enemy"

description: This project aims to evaluate the significance of olfaction in a butterfly species Pieris brassicae. By knocking out the odorant receptor co-receptor (Orco), the larval brain structure and adult oviposition changes confirmed the successful knockout. The changes in knockout caterpillars in optimal host-plant seeking, performance under the attack of natural enemies and behavioral preference to plant volatiles suggested the critical importance of olfaction in caterpillars in the tri-trophic interactions.
DOI: 10.4121/610e707d-b10a-467e-8afe-ead477827914.v2
title: Data underlying the publication "Loss of olfaction reduces caterpillar performance and increases susceptibility to a natural enemy"

description: This project aims to evaluate the significance of olfaction in a butterfly species Pieris brassicae. By knocking out the odorant receptor co-receptor (Orco), the larval brain structure and adult oviposition changes confirmed the successful knockout. The changes in knockout caterpillars in optimal host-plant seeking, performance under the attack of natural enemies and behavioral preference to plant volatiles suggested the critical importance of olfaction in caterpillars in the tri-trophic interactions.
DOI: 10.15468/dl.3368dp
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Pachycladon novae-zelandiae"
 ]
}

 The dataset includes 214 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017705-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wzd2at
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus improvisus",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017707-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t3eptj
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus improvisus",
 "Country is Estonia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017708-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zwbbna
title: Occurrence Download

description: A dataset containing 12 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Incilius pisinnus"
 ]
}

 The dataset includes 12 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017710-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pjanzm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus improvisus",
 "Country is Australia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017706-250711103210423/datasets/export for details.
DOI: 10.15468/dl.xw57e7
title: Occurrence Download

description: A dataset containing 13085 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-45 -20,-42 -20,-42 -17,-45 -17,-45 -20))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Psychodidae"
 ]
}

 The dataset includes 13085 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017709-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15920371
title: Codes and data, two examples for Pageoph paper by Zahradnik et al., 2025; Isola_BaBoo and 2025 Anydros events
DOI: 10.5281/zenodo.15920372
title: Codes and data, two examples for Pageoph paper by Zahradnik et al., 2025; Isola_BaBoo and 2025 Anydros events
DOI: 10.15468/dl.vbq9p5
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:AAA8491"
 ]
}

 The dataset includes 16 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017713-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rxu4au
title: Occurrence Download

description: A dataset containing 741 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lantana viburnoides",
 "HasCoordinate is true",
 "Geometry POLYGON ((-17.66889 -35.11691, 51.34702 -35.11691, 51.34702 37.62, -17.66889 37.62, -17.66889 -35.11691))"
 ]
}

 The dataset includes 741 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017714-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5djgw6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Bromus mollis vulgaris, Bromus mollis vulgaris, Bromus mutabilis hordeaceus, Bromus secalinus hordeaceus, Bromus secalinus hordeaceus, Bromus secalinus hordeaceus, Bromus segetalis hordeaceus, Bromus segetalis hordeaceus, Bromus simplicissimus, Bromus thominii)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017716-250711103210423/datasets/export for details.
DOI: 10.15468/dl.j7r9vf
title: Occurrence Download

description: A dataset containing 6388 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Columba livia",
 "Country is Bolivia (Plurinational State of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 6388 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017711-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gg2ymh
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa valdes-bermejoi"
 ]
}

 The dataset includes 28 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017717-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15920613
title: Source code: Impurity-induced Inverse Faraday Effect

description: This publication offers the necessary scripts to replicate the findings in the article: Impurity-induced Inverse Faraday Effect. The main script file II_IFE_script.m generates the plots shown in Fig. 2 in the main text. Two additional functions integrand_function_2D.m and states_integral.m are called for calculations of the magnetization and the sum over states, respectively.Requirements:MATLAB (tested with version R2023a). Calculations use the Parallel Computing Toolbox, which can be turned off on demand.
DOI: 10.5281/zenodo.15920615
title: Source code: Impurity-induced Inverse Faraday Effect

description: This publication offers the necessary scripts to replicate the findings in the article: Impurity-induced Inverse Faraday Effect. The main script file II_IFE_script.m generates the plots shown in Fig. 2 in the main text. Two additional functions integrand_function_2D.m and states_integral.m are called for calculations of the magnetization and the sum over states, respectively.Requirements:MATLAB (tested with version R2023a). Calculations use the Parallel Computing Toolbox, which can be turned off on demand.
DOI: 10.15468/dl.6se5u2
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bactrocera carambolae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 500",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 169 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017718-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6szkby
title: Occurrence Download

description: A dataset containing 5464312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Setophaga petechia)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 5464312 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017674-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1134877
title: Descriptive Buildings Record (level 2) and Analytical Buildings Record (level 3) at Cornwall College (John Keay House) Tregonissey Road, St Austell, Cornwall

description: null
DOI: 10.15468/dl.9794b4
title: Occurrence Download

description: A dataset containing 638661 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Setophaga petechia)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 638661 records from 298 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017676-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3kbhcb
title: Occurrence Download

description: A dataset containing 110705 records in GBIF matching the query:
SELECT
 kingdom,
 kingdomkey,
 phylum,
 phylumkey,
 class,
 classkey,
 "order",
 orderkey,
 family,
 familykey,
 genus,
 genuskey,
 species,
 specieskey,
 "year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000)) eeacellcode,
 COUNT(*) occurrences,
 MIN(GBIF_TEMPORALUNCERTAINTY(eventdate, eventtime)) mintemporaluncertainty,
 MIN(COALESCE(coordinateuncertaintyinmeters, 1000)) mincoordinateuncertaintyinmeters
FROM
 occurrence
WHERE
 occurrence.countrycode = 'NL'
 AND occurrence.datasetkey = '8a863029-f435-446a-821e-275f4f641165'
 AND occurrence.occurrencestatus = 'PRESENT'
 AND (CAST(occurrence.taxonkey AS INTEGER) = 2482048 OR CAST(occurrence.acceptedtaxonkey AS INTEGER) = 2482048 OR CAST(occurrence.kingdomkey AS INTEGER) = 2482048 OR CAST(occurrence.phylumkey AS INTEGER) = 2482048 OR CAST(occurrence.classkey AS INTEGER) = 2482048 OR CAST(occurrence.orderkey AS INTEGER) = 2482048 OR CAST(occurrence.familykey AS INTEGER) = 2482048 OR CAST(occurrence.genuskey AS INTEGER) = 2482048 OR CAST(occurrence.specieskey AS INTEGER) = 2482048)
 AND (occurrence."year" &gt;= 2015 AND occurrence."year" &lt;= 2025)
 AND occurrence.hasgeospatialissues = FALSE
 AND NOT GBIF_STRINGARRAYCONTAINS(occurrence.issue, 'TAXON_MATCH_FUZZY', TRUE)
 AND (occurrence.distancefromcentroidinmeters &gt;= 2000.0 OR occurrence.distancefromcentroidinmeters IS NULL)
 AND NOT occurrence.basisofrecord IN ('FOSSIL_SPECIMEN', 'LIVING_SPECIMEN')
 AND (occurrence.specieskey IS NOT NULL AND occurrence."year" IS NOT NULL AND occurrence.hascoordinate = TRUE)
GROUP BY
 occurrence.kingdom,
 occurrence.kingdomkey,
 occurrence.phylum,
 occurrence.phylumkey,
 occurrence.class,
 occurrence.classkey,
 occurrence."order",
 occurrence.orderkey,
 occurrence.family,
 occurrence.familykey,
 occurrence.genus,
 occurrence.genuskey,
 occurrence.species,
 occurrence.specieskey,
 occurrence."year",
 GBIF_EEARGCODE(1000, decimallatitude, decimallongitude, COALESCE(coordinateuncertaintyinmeters, 1000))

 The dataset's 110705 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017702-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.49cn92
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba healyi"
 ]
}

 The dataset includes 8 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017725-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yy93f7
title: Occurrence Download

description: A dataset containing 697 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((127.25965 31.93015,107.35951 38.90082,92.18144 29.56913,95.66679 9.89386,133.89299 11.9176,127.25965 31.93015))",
 "TaxonKey is Clerodendrum mandarinorum"
 ]
}

 The dataset includes 697 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017721-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y8wucw
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Erysimum welcevii"
 ]
}

 The dataset includes 9 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017722-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tn8mas
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus improvisus",
 "Country is Finland",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017724-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15918897
title: Research data supporting: "Maximum Information Extraction From Noisy Data Via Shannon Entropy Minimization"

description: # Research data supporting: "Maximum Information Extraction Via Clustering and Minimization of Shannon Entropy"

* `datasets/` contains the trajectory files of ice/water coexistence, and the .json files for the analysis of Fig3b.* `Fig1/` contains the code for the analyses shown in Fig1.* `Fig2/` contains the code for the analyses shown in Fig2 and FigS1.* `Fig3/` contains the code for the analyses shown in Fig3.* `Fig4/` contains the trajectory and code for the analyses shown in Fig4 and FigS2.* `Fig4_3D_case/` contains the trajectory and code for the gray curves in Fig4 (3D case).
DOI: 10.15468/dl.6b9vtm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Balanus improvisus",
 "Country is Iran (Islamic Republic of)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017726-250711103210423/datasets/export for details.
DOI: 10.5281/zenodo.15882143
title: Detecting Foldback Artifacts in Long Reads

description: All PAF alignment files generated from Minimap2 for data analyzed in "Detecting Foldback Artifacts in Long Reads". We also included all report files generated by our Breakinator tool (https://github.com/jheinz27/breakinator), classifying a breakpoint as a putative foldback or chimeric artifact, or a true breakpoint ("Pass") in breakinator_reports.tar.gz