cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4797733.v1
title: Computed List of Emission and Recombination Coefficients for O II Recombination Lines

description: The list presents emission and recombination coefficients of the O II transitions arising from recombination of doubly-ionised oxygen O^{2+} with a free electron. An intermediate coupling treatment that fully accounts for the dependence of the distribution of population among the ground levels of O^{2+} on electron temperature (T_e) and electron number density (N_e) is used. The calculation is extended down to low electron temperatures where dielectronic recombination arising from Rydberg states converging on the O^{2+} ground levels is an important process. The data are given as function of T_e and N_e in three Cases (A, B and C). The data are suitable in particular for the physical conditions found in planetary nebulae and H II regions. An interactive data server in the form of fortran 77 code is also provided as an accessory for mining the data of emission coefficients and obtaining Lagrange interpolated values for any choice of the two variables, T_e and N_e, between the explicitly provided values for any set of wavelengths and for any Case.
DOI: 10.6084/m9.figshare.17283767.v1
title: punishment_credibility_and_cooperation_in_public_good_games.dta

description: Dataset from a public good experiment with punishment opportunities. It consists of three treatment conditions that vary the probability with which punishment decisions are carried out (p). Treatment vaariable takes "P100" (p=1), "P80" (p=0.8) and "P20" (p=0.2). The dataset records contribution decisions, punishment decisions, first state and final period payoffs, and socioeconomic variables extracted from subjects.
DOI: 10.6084/m9.figshare.22191400.v6
title: FenFit CT Segmentations and Tabular Data

description: Raw de-identified patient geometry files used in FenFit paper
DOI: 10.6084/m9.figshare.9757544.v1
title: IEEE 33-node system and 20-node gas system

description: Please refer to my paper ''Dynamic Pricing for Integrated Demand Response in Electricity and Natural gas Distribution Networks'' if published online. <br>
DOI: 10.6084/m9.figshare.14611485.v1
title: Single-cell RNA sequencing of freshly isolated bovine milk cells and cultured primary mammary epithelial cells

description: Files are supplementary to the paper "Single-cell RNA sequencing of freshly isolated bovine milk cells and cultured primary mammary epithelial cells".
DOI: 10.6084/m9.figshare.24025749.v1
title: Supplementary Material for: Calcium-citrate anticoagulation during continuous renal replacement therapy in patients with metformin intoxication: a case series, mathematical estimation of citrate accumulation and literature review.

description: Background. Metformin intoxication causes lactic acidosis by inhibiting Krebs' cycle and oxidative phosphorylation. Continuous renal replacement therapy (CRRT) is recommended for metformin removal in critically ill patients. According to current guidelines, regional citrate anticoagulation (RCA) is the first-line strategy. However, since metformin also inhibits citrate metabolism, a risk of citrate accumulation could be hypothesized. Objectives. In the present study, we monitored the potential citrate accumulation in metformin-associated lactic acidosis (MALA) patients treated with CRRT and RCA using the physical-chemical approach to acid-base interpretation. Material and Methods. We collected a case series of three patients with MALA. Patients were treated with continuous venovenous hemofiltration (CVVH), and RCA was performed with diluted citrate solution. Citrate accumulation was monitored through two methods: the ratio between total and ionized plasma calcium concentrations (T/I calcium ratio) above 2.5 and the strong ion gap (SIG) to identify an increased concentration of unmeasured anions (UA). Lastly, a mathematical model was developed to estimate the expected citrate accumulation during CVVH and RCA. Results. All three patients showed a resolution of MALA after the treatment with CVVH. The T/I calcium ratio was consistently below 2.5, and SIG decreased, reaching values lower than 6 mEq/L after 48h of CVVH treatment. According to the mathematical model, the estimated SIG without citrate metabolism should have been around 21 mEq/L due to citrate accumulation. Conclusions. In our clinical management, no signs of citrate accumulation were recorded in MALA patients during treatment with CVVH and RCA. Our data support the safe use of diluted citrate to perform RCA during metformin intoxication.
DOI: 10.6084/m9.figshare.29095730.v1
title: Descripción de componentes con sus niveles de abstracción, clasificación, subclasificación. Patrones de interacción.

description: Descripción de componentes con sus niveles de abstracción, clasificación, subclasificación. Patrones de interacción.
DOI: 10.6084/m9.figshare.1610063.v1
title: HOPV15 Dataset

description: Standard data sets used for the calibration of computational results have been extremely useful for the development of electronic structure methods and their application to areas such as thermochemistry1–3 as well as non-covalent interactions4,5. To our knowledge, the field of organic photovoltaics, specifically as it pertains to high-throughput virtual screening, lacks a similar collection of data. Since the relationship between theoretically predicted and experimentally observed properties is often non-trivial, the dissemination of directly comparable data for a well-defined set of molecules can be a great asset to accelerate advances in this field. The Harvard Organic Photovoltaic Dataset (HOPV15) presented in this work is a collation of experimental photovoltaic data from the literature, and corresponding quantum-chemical calculations performed over a range of geometries, each with quantum chemical results using a variety of density functionals and basis sets. It is anticipated that this dataset will be of use in both relating electronic structure calculations to experimental observations through the generation of calibration schemes, as well as for the creation of new semi-empirical methods and the benchmarking of current and future model chemistries in the domain of organic electronics.
DOI: 10.6084/m9.figshare.28691663.v1
title: Dataset1: Normal data

description: Dataset 1
DOI: 10.6084/m9.figshare.5965777.v1
title: MOESM3 of OPERA models for predicting physicochemical properties and environmental fate endpoints

description: Additional file 3: S3. An example Excel table downloaded from the Chemistry Dashboard with predicted OPERA values.
DOI: 10.6084/m9.figshare.8969210.v1
title: Additional file 8: of Discovery and characterization of the evolution, variation and functions of diversity-generating retroelements using thousands of genomes and metagenomes

description: Table S3. Data information of human metagenomic datasets. URL: http://cgm.sjtu.edu.cn/index/pub/software/MetaCSST/supplementary/Supplementary_Table_3.xlsx (XLSX 10 kb)
DOI: 10.17632/kz7396kkmr
title: Improving Taxi Drivers’ Lifestyle and Preventing them from Type 2 Diabetes

description: A questionnaire contained eight questions was designed following the FINDRISC method to assess the risk of developing diabetes in the next ten years. The FINDRISC score vary from 0 to 26 and can be divided into categories. The questionnaire includes the following variables: age, family history of diabetes, waist circumference, body mass index, daily consumption of fruits and vegetables, physical activity, high blood glucose, history antihypertensive drug treatment. In addition, three questions were added to find out the use of tobacco, the health insurance, and the average distances traveled per day. Data were analyzed using IBM SPSS Statistics version 21.0 and our survey was performed in September 2019. The results of our statistical analysis revealed for whole population an average score of 10,87 (SD = 5,12). The analysis of the score for whole population did not reveal a significant meaning. Accordingly, the researcher tried to approach the analysis by risk and age.
DOI: 10.6084/m9.figshare.1433993.v10
title: Numerical integration of the rate equations of the MerB reaction mechanism

description: Source code, Windows executable, and outputs. Syntax is: HgMerB_kinetics [initial concentration of organomercurial (optional)] [number of steps with timestep tightening] [initial_timestep][pH] [type of molecule] [how many seconds of kinetic information you want] [HgMerB (or free MerB) concentration] [concentration of the Hg-removing molecules tested] [barriers in kcal.mol-1 for the 38 reaction steps] [name of output file] Type of molecule is : 1 for MerA, 2 for dithiothreitol, 3 for GSH or other monothiols Notes on the algorithm: A) concentrations are output whenever : A1) concentration of HgMerB decreases by 1%, or A2) concentration of product increases by 1% of initial MerB concentration, or A3) 10^7 integration timesteps have elapsed since the last output (or 3*10^5, if less than 10^7 integration timestpes have elapsed since the beginning of the simulation) B) Integration timestep is scaled to ensure that the concentration of every intermediate does not increase more than 10% of its previous concentration. After product concentration increases above 0.1% of initial enzyme concentration, this test is disabled. C) Further scaling is always performed to prevent concentrations of any intermediate from becoming negative. C) Numerical noise (or even outright integration error) may occur if the reaction quotient of any reaction changes too abruptly due to numerical increase in the reactant concentrations above the real equilibrium concentrations or (less commonly) extensive depletion of products. This is most likey to occur when consecutive rection steps have extremely small activation energies.The option of setting a number of "Timestep tightening cycles" is present to help overcome these issues. In each of these cycles, the timestep is decreased to ensure that, in the next cycle, the intermediates which currently have positive derivatives (of concentration w.r.t. time) still have positive derivatives. The requested number of integration timesteps with timestep-tightening cycles is performed every time that concentrations are output to disk.
DOI: 10.6084/m9.figshare.18467504.v1
title: NISM dataset.zip

description: NISM dataset
DOI: 10.6084/m9.figshare.22341070.v3
title: Chick Embryo Segmented Region Length | Datasets used to infer individual somite period and length with systematic measurements of the whole embryo segmented region.

description: <strong>Data description </strong>| Chick Embryo Segmented Region Length Measurements.
<strong>Brief methodology description</strong> | Length measurements were performed in frames from live imaging taken at 3 minute intervals, using Axiovision Se64 Rel 4.9.1 (Carl Zeiss) or Zen 2.5 (blue edition, Carl Zeiss). In each frame, measurements were taken from the anterior border of the first somite until the last completely formed cleft. A somitic cleft was considered completely formed only when it was clearly visible from its axial to lateral limits. We conducted a total of 2836 measurements, corresponding to 13 different chicken embryos, in stages HH7 to HH10 (corresponding to somites 1 to 10), and HH11+ to HH13+ (corresponding to somites 14 to 20). To minimize measurement biases, at least two different operators performed independent measurements.
<strong>Data analysis R Package</strong> | These data were analysed using the R package: <em>SomiteExplorerR</em> deposited in GitHub (https://github.com/iduarte/SomiteExplorerR).
<strong>Citation</strong> | These data are presented and discussed in the scientific paper: 
Ana Cristina Maia-Fernandes, Ana Martins-Jesus, Tomás Pais-de-Azevedo, Ramiro Magno, Isabel Duarte, Raquel P. Andrade.<em> </em><em>Spatio-Temporal Dynamics of Early Somite Segmentation in the Chicken Embryo.</em><em> </em>2023. (<strong>doi:</strong> https://doi.org/10.1101/2023.04.05.535703).
<br>
DOI: 10.6084/m9.figshare.24265018.v2
title: Variant Description

description: A detailed description for each variant available in the empirical study
DOI: 10.6084/m9.figshare.28737674.v1
title: A neglected source of microplastic: exploring impacts of spray paint on soil

description: Paint microplastics are an overlooked source of soil contamination. This study reveals that variations in concentration, polymeric composition, particle sizes, and heavy metal additives of spray paint microplastics significantly affect soil health.
DOI: 10.17632/kfcgzg6s4y
title: "Raw data of indicators and code"

description: Various data used for calculating the resilience index, such as population density and annual average rainfall; as well as the original code used in the calculations.
DOI: 10.17632/mmyw3fgjxh
title: FDTD: Solving 1+1D delay PDE in parallel

description: We present a proof of concept for solving a 1+1D complex-valued, delay partial differential equation (PDE) that emerges in the study of waveguide quantum electrodynamics (QED) by adapting the finite-difference time-domain (FDTD) method. The delay term is spatially non-local, rendering conventional approaches such as the method of lines inapplicable. We show that by properly designing the grid and by supplying the (partial) exact solution as the boundary condition, the delay PDE can be numerically solved. In addition, we demonstrate that while the delay imposes strong data dependency, multi-thread parallelization can nevertheless be applied to such a problem. Our code provides a numerically exact solution to the time-dependent multi-photon scattering problem in waveguide QED.
DOI: 10.6084/m9.figshare.26771011.v1
title: Time Zone database

description: CSV package contains <i>country.csv</i> and <i>timezone.csv</i>. The data is comma-delimited text in UTF-8 encoding.<br>
DOI: 10.6084/m9.figshare.29176478.v1
title: Sanchez et al., 2025 - VR Perceptions [Virtual Worlds] Datasets

description: Enclosed are the datasets and codes books for the three studies presented in the paper VR in the Workplace: Perceptions and Reactions to Organizations using VR in High versus Low Stakes Contexts [Virtual Worlds].
DOI: 10.17632/r5rs8m34z4
title: A systematic review and meta-analysis

description: In-depth literature search spanning from 1975 to 2023 to cover different production diseases in dairy cattle. Physiological systems evaluated: reproductive, mammary,
metabolic, integumentary, immune, musculoskeletal, digestive, and respiratory. Original research in the English language. 
The searches specifically targeted documents published in peer-reviewed journals and written in English. The search process yielded a total of 3,349 records. These records underwent a two-stage filtering process, initially screening the titles and abstracts. From this initial screening, 505 articles were deemed relevant and were then imported into SAS 9.4, where additional analysis was conducted using SAS integrated with Python and the NLTK (Natural Language Toolkit) library for basic full-text analysis. 
The rigorous search and filtering process ensured that a comprehensive and representative set of articles was included in the study, providing a robust foundation for the meta-analysis and systematic review of the identified traits related to production diseases in dairy cows. The studies included in the data extraction process met specific criteria for inclusion.
DOI: 10.6084/m9.figshare.14497992.v1
title: Waimea Main Dataset

description: Data files used for mapping the distribution and diversity of microbes in Waimea Valley, Oahu, Hawaii. <br><br>See https://github.com/soswift/waimea_microbe_paper for code.<br>
DOI: 10.6084/m9.figshare.21610380.v2
title: List of Participants.pdf

description: Representatives from each of these organizations provided the insights that went toward the development of the study. Each organization was specifically picked and approached because of its current role and activities in Rwanda's Creative Industries and the overall economy.
DOI: 10.6084/m9.figshare.22146332.v1
title: DNA alignments for nt and nt12 datasets

description: Sequence matrix used in the study
DOI: 10.6084/m9.figshare.24245665.v1
title: Discovery and inference of a causal network with hidden confounding*

description: This article proposes a novel causal discovery and inference method called GrIVET for a Gaussian directed acyclic graph with unmeasured confounders. GrIVET consists of an order-based causal discovery method and a likelihood-based inferential procedure. For causal discovery, we generalize the existing peeling algorithm to estimate the ancestral relations and candidate instruments in the presence of hidden confounders. Based on this, we propose a new procedure for instrumental variable estimation of each direct effect by separating it from any mediation effects. For inference, we develop a new likelihood ratio test of multiple causal effects that is able to account for the unmeasured confounders. Theoretically, we prove that the proposed method has desirable guarantees, including robustness to invalid instruments and uncertain interventions, estimation consistency, low-order polynomial time complexity, and validity of asymptotic inference. Numerically, GrIVET performs well and compares favorably against state-of-the-art competitors. Furthermore, we demonstrate the utility and effectiveness of the proposed method through an application inferring regulatory pathways from Alzheimer’s disease gene expression data.
DOI: 10.6084/m9.figshare.27038086.v1
title: Medical Humanities Pre-Workshop Survey (Responses)-cleaned.xlsx

description: This is a pilot faculty development workshop for healthcare professionals in the design and application of medical humanities in medical education. We collected pre- and post- workshop scores of the participants for programme evaluation.
DOI: 10.6084/m9.figshare.5662282.v2
title: Dataset1 and putative SNPs under selection

description: Dataset 1 contains the called genotypes for 60 plains zebras, 3 Grevy's zebras, 3 mountain zebras and one Quagga zebra. A total of 98,512 SNPs were called. The data is based on the RADseq technology. We used a missingness filter of 0.2 and excluded monomorphic sites.<br>We also include a list of SNPs putatively under selection<br><br>
DOI: 10.6084/m9.figshare.21565377.v1
title: Heptacodium_miconioides_annotation file

description: An annotation of the Heptacodium miconioides genome sequence.
DOI: 10.6084/m9.figshare.25621536.v1
title: datasets.xlsx

description: dataset_iris
DOI: 10.6084/m9.figshare.5998649.v1
title: Outputs-analyses-ACr_startingParams

description: Initial parameter values for fitting variograms
DOI: 10.6084/m9.figshare.6730967.v1
title: KZN pondscape full dataset and species matrices

description: This is the full dataset of species data(dragonflies, beetles and bugs), diversity index data, environmental data and vegetation data. R-ready.
DOI: 10.17632/3k254txx7m
title: Técnicas radiográficas odontológicas em equinos

description: Descrição resumida das principais projeções radiográficas para avaliação do crânio e elementos dentários nos equinos.
DOI: 10.6084/m9.figshare.22345024.v1
title: Young-adults--mental-health-and-help-seeking_What-difficulties-do-they-face_A-Singapore-based-study.sav

description: This dataset presents data collected through an online self-administered questionnaire on help-seeking intentions and attitudes from 132 young adults aged 21 to 30 years old residing in Singapore.
DOI: 10.6084/m9.figshare.24777042.v4
title: Longitudinal characterization of the metabolome of dairy cows transitioning from one lactation to the next one: Investigations in the liver

description: Liver samples from 12 dairy cows were analyzed using the Biocrates MxP<sup>®</sup> Quant 500 kit with targeted metabolomics. Metabolomic analysis of the liver during early lactation revealed remarkable changes in amino acids, biogenic amines, acylcarnitines, phosphatidylcholines, sphingomyelins and bile acids. These shifts highlight metabolic adaptations to the increased energy demands of lactation, suggesting metabolic stress and incomplete fatty acid oxidation in the liver. <br>
DOI: 10.6084/m9.figshare.27868821.v1
title: Landscape and Local Drivers of Mangrove Community Structure and Root Plasticity in Grenada

description: We examined environmental drivers of mangrove species dominance and white mangrove root plasticity across basin and fringe forests in Grenada. Landscape and local-scale models revealed distinct patterns in species zonation and aerial root expression related to elevation, soil chemistry, and porewater conditions. This repository contains both raw data (from full vegetation surveys, rapid surveys, and species importance values) and model results (including AIC, BIC, convergence status, and model weights for landscape, local, and species dominance analyses).
DOI: 10.6084/m9.figshare.28548758.v1
title: BreastSwinFedNetX

description: The datasets used in this study were collected from the Kaggle platform. Below are their available links:1. BreakHis: https://www.kaggle.com/datasets/ambarish/breakhis2. Breast Ultrasound Images Dataset (BUSI): https://www.kaggle.com/datasets/sabahesaraki/breast-ultrasound-images-dataset3. CBIS-DDSM: https://www.kaggle.com/datasets/seanbaek19/cbis-ddsm-40964. INbreast: https://www.kaggle.com/datasets/eoussama/breast-cancer-mammograms/data5. Combined Dataset: https://www.kaggle.com/datasets/rezaullhaque/combined-dataset/data<br>The total data size is 26 GB.
DOI: 10.6084/m9.figshare.5121208.v1
title: Supplementary Material for: Quantitative mRNA Analysis of Serotonin 5-HT<sub>4</sub> and Adrenergic β<sub>2</sub> Receptors in the Mouse Embryonic Telencephalon

description: The adrenergic β<sub>2</sub> receptor (β<sub>2</sub>-AR) gene is embedded (nested) within the serotonin 5-HT<sub>4</sub> receptor (5-HT<sub>4</sub>-R) gene and these two receptors can interact at the transcriptional and post-transcriptional levels. The mouse 5-HT<sub>4</sub>-R gene contains a number of exons and codes at least four mRNA splice variants (5-HT<sub>4(a)</sub>-R, 5-HT<sub>4(b)</sub>-R, 5-HT<sub>4(e)</sub>-R, 5-HT<sub>4(f)</sub>-R), whereas the β<sub>2</sub>-AR gene is intronless. Since 5-HT<sub>4</sub>-Rs and β<sub>2</sub>-ARs can form homodimers and heterodimers and they increase intracellular cAMP levels, these receptors may be important for integrating serotonergic and noradrenergic signals at the single-neuron level. Both 5-HT<sub>4</sub>-R and β<sub>2</sub>-AR have been implicated in autism spectrum disorders, depression, and Alzheimer’s disease. In the fetal brain, these receptors may mediate the effects of stress on neurodevelopmental processes. We used quantitative reverse-transcription PCR (qRT-PCR) to investigate the developmental expression of 5-HT<sub>4</sub>-R and β<sub>2</sub>-AR in the mouse telencephalon at embryonic days (E) 13–18. At E13–E14, the mRNA levels of all 5-HT<sub>4</sub>-R splice variants were very low, but by E17–E18 they increased 7-fold (5- HT<sub>4(a)</sub>-R), 5-fold (5-HT<sub>4(b)</sub>-R), 9-fold (5-HT<sub>4(e)</sub>-R), and 11-fold (5-HT<sub>4(f)</sub>-R). The expression of 5-HT<sub>4(a)</sub>-R and 5-HT<sub>4(b)</sub>-R was rapidly upregulated between E14 and E15, at the time when the thalamocortical projections arrive in the telencephalon. This pattern was not observed in the expression of 5-HT<sub>4(e)</sub>-R and 5-HT<sub>4(f)</sub>-R, the mRNA levels of which showed a steady, gradual increase from E13 to E18. The β<sub>2</sub>-AR mRNA levels were relatively high throughout the studied period of development and increased only by 70% from E13–E14 to E17–E18. These findings suggest that 5-HT<sub>4</sub>-R splice variants and β<sub>2</sub>-ARs are differentially regulated in the embryonic telencephalon and that their relative amounts may carry developmentally important information.