cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/eerb8-8wx40
title: MP TopJ 27.5KX

description: Mycoplasma pneumonia TopJ mutant, bad alignment
description: <strong>Tilt Series Date:</strong> 2010-03-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-30/rawdata/</p>10mar31a_B572c_037.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-30/rawdata/10mar31a_B572c_037.mrc"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_037_part.rec,  Reconstruction (Pixel Size 1.548 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-30/3dimage_17101/10mar31a_B572c_037_part.rec"
        > <i class="download icon"></i> Download </a></p>

        10mar31a_B572c_037_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-30/3dimage_56008/10mar31a_B572c_037_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.c2gabf
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanoides tuberculata",
 "Country is Cabo Verde",
 "HasCoordinate is true"
 ]
}

 The dataset includes 13 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033165-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/h8xg3-1z754
title: MP wt 27.5KX

description: Mycoplasma pneumonia wt mutant, attachment organelle in middle of cell
description: <strong>Tilt Series Date:</strong> 2010-02-21</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2010-02-21-2_slicer4903.jpg: REZ jsa2010-02-21-2_slicer4904.jpg: Unknown jsa2010-02-21-2_slicer4905.jpg: Unknown filament jsa2010-02-21-2_slicer4907.jpg: Unknown
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-2/rawdata/</p>10feb21a_MP3a_002.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-2/rawdata/10feb21a_MP3a_002.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_002_part.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-2/3dimage_17111/10feb21a_MP3a_002_part.rec"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_002_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-2/3dimage_55956/10feb21a_MP3a_002_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.rcb3uq
title: Occurrence Download

description: A dataset containing 228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanoides tuberculata",
 "Country is Colombia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 228 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033167-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/1n9h3-qj559
title: CB15N w/ methanol control

description: Raw data files of CB15N w/ methanol control
description: <strong>Tilt Series Date:</strong> 2009-10-10</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 190.0 eV/Å²,  defocus: -12.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Experiments done by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Exponential phase in PYE</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-2/rawdata/</p>09oct10b_WTCCmet_001.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-2/rawdata/09oct10b_WTCCmet_001.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct10b_WTCCmet_002.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-2/rawdata/09oct10b_WTCCmet_002.mrc"
        > <i class="download icon"></i> Download </a></p>

        09oct10b_WTCCmet_002_part.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-10-10-2/3dimage_10001/09oct10b_WTCCmet_002_part.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/at0g5-h8q65
title: t-ADL

description: Raw data files of t-ADL
description: <strong>Tilt Series Date:</strong> 2009-03-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Halohasta litchfieldiae</p>
<strong>Strain:</strong> tADL</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.5°, constant angular increment, dosage: 50.0 eV/Å²,  defocus: 30.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR</p>
<strong>Collaborators and Roles:</strong> Cells provided by Mike Dyall-Smith; Data collected by Zhuo Li. </p>
<strong>Purification / Growth Conditions / Treatment:</strong> Cells were grown on the grids.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-03-01-14/rawdata/</p>09mar01b_bx98_tADL_014.mrc,  Tilt Series (Pixel Size 0.95 nm), 687.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-03-01-14/rawdata/09mar01b_bx98_tADL_014.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar01b_bx98_tADL_014.ali,  172.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-03-01-14/3dimage_4318/09mar01b_bx98_tADL_014.ali"
        > <i class="download icon"></i> Download </a></p>

        09mar01b_bx98_tADL_014_full.rec,  Reconstruction (Pixel Size 1.9 nm), 524.3 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/j3449-tjw47
title: 1003_deletion w/o iron

description: Raw data files of 1003_deletion w/o iron
description: <strong>Tilt Series Date:</strong> 2009-11-12</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -15.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach, IMOD</p>
<strong>Collaborators and Roles:</strong> Cells sent from Arash Komeili, data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Could be) Stationary phase</p>
<strong>Sample Preparation:</strong> Quantifoil R2/1 or R2/2, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-11/rawdata/</p>09nov12a_mamknofe_011.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-11/rawdata/09nov12a_mamknofe_011.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov12a_mamknofe_011_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-11/3dimage_9797/09nov12a_mamknofe_011_full.rec"
        > <i class="download icon"></i> Download </a></p>

        09nov12a_mamknofe_011.tif,  354.1 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-12-11/file_2718/09nov12a_mamknofe_011.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.tp8qt9
title: Occurrence Download

description: A dataset containing 20 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Melanoides tuberculata",
 "Country is China",
 "HasCoordinate is true"
 ]
}

 The dataset includes 20 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0033166-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/pq3pm-y4407
title: MP wt 27.5KX

description: Mycoplasma pneumonia wt mutant, attachment organelle in cell
description: <strong>Tilt Series Date:</strong> 2010-02-21</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2010-02-21-19_slicer18141.jpg: terminal organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-19/rawdata/</p>10feb21a_MP3a_019.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-19/rawdata/10feb21a_MP3a_019.mrc"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_019_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-19/3dimage_17145/10feb21a_MP3a_019_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10feb21a_MP3a_019_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-02-21-19/3dimage_55963/10feb21a_MP3a_019_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hkepy-der56
title: VSVGpNL4GFP entry HUVECs

description: HUVECs 30 min post spinoculation with VSVGpNL4GFP
description: <strong>Tilt Series Date:</strong> 2011-08-13</p>
<strong>Data Taken By:</strong> Cora Woodward</p>
<strong>Species / Specimen:</strong> HUVECs</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -6.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSF tomo</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Proviral construct from Irvin Chen UCLA</p>
<strong>Purification / Growth Conditions / Treatment:</strong> infection with VSVG pNL4GFP by spinoculation</p>
<strong>Sample Preparation:</strong> manual blot</p>
  11aug13_BATCH_0003_ns_full.jpg: file associated to 3D Image #54260
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-13-2/rawdata/</p>11aug13_BATCH_0003_ns.st,  Tilt Series (Pixel Size 0.5 nm), 495.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-13-2/rawdata/11aug13_BATCH_0003_ns.st"
        > <i class="download icon"></i> Download </a></p>

        11aug13_BATCH_0003_ns_full.rec,  Reconstruction (Pixel Size 2.0 nm), 666.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-13-2/3dimage_54260/11aug13_BATCH_0003_ns_full.rec"
        > <i class="download icon"></i> Download </a></p>

        11aug13_BATCH_0003_ns_full.tiff,  file associated to 3D Image #54260, 1.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/cwl2011-08-13-2/file_13032/11aug13_BATCH_0003_ns_full.tiff"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/1ze6r-csj47
title: (D161A)MamK-GFP/MamK_deletion

description: Raw data files of (D161A)MamK-GFP/MamK_deletion
description: <strong>Tilt Series Date:</strong> 2009-11-23</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 110.0 eV/Å²,  defocus: -16.0 μm,  magnification: 18000x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> RAPTOR, Peach</p>
<strong>Collaborators and Roles:</strong> Cells provided by Arash Komeili; data collected by ZL.</p>
<strong>Purification / Growth Conditions / Treatment:</strong> (Probably) stationary phase </p>
<strong>Sample Preparation:</strong> Quantifoil R2/2, R2/1, 10nm gold, 100% humidity</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-7/rawdata/</p>09nov23a_D161AdK_007.mrc,  Tilt Series (Pixel Size 1.192 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-7/rawdata/09nov23a_D161AdK_007.mrc"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161AdK_007_full.rec,  Reconstruction (Pixel Size 2.384 nm), 471.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-7/3dimage_9628/09nov23a_D161AdK_007_full.rec"
        > <i class="download icon"></i> Download </a></p>

        09nov23a_D161AdK_007.tif,  2.0 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2009-11-23-7/file_2695/09nov23a_D161AdK_007.tif"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/8qjmp-vwj53
title: MP III4 27.5KX

description: Mycoplasma pneumonia III4 mutant, attachment organelle
description: <strong>Tilt Series Date:</strong> 2010-04-01</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
  jsa2010-04-01-12_slicer13265.jpg: Attachment Organelle jsa2010-04-01-12_slicer13266.jpg: Attachment Organelle
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-04-01-12/rawdata/</p>10apr01a_B718a_012.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-04-01-12/rawdata/10apr01a_B718a_012.mrc"
        > <i class="download icon"></i> Download </a></p>

        10apr01a_B718a_012_full.rec,  Reconstruction (Pixel Size 1.548 nm), 314.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-04-01-12/3dimage_16633/10apr01a_B718a_012_full.rec"
        > <i class="download icon"></i> Download </a></p>

        10apr01a_B718a_012_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-04-01-12/3dimage_56023/10apr01a_B718a_012_SIRT.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.14857203
title: Additional Supplement Data of the manuscript "Genome-Wide Association Study of Asthma Exacerbations in the Spanish Population"

description: For this manuscript we conducted a meta-analysis from genome-wide association study of asthma exacerbations in 345 adults from the Genomics and Metagenomics of Asthma Severity (GEMAS), 369 from Characterizing Alpha-1-Antitrypsin Deficiency in patients with pulmonary diseases (CAATDPUL), and 138 from MEchanisms involved in the Genesis and evolution of Asthma (MEGA) studies as discovery.

Summary statistics output is organized in the following columns:



RSID: Variant ID based on chromosome:position:effect allele:rsID

STUDY: number of studies or subsets were is present the probe

BETA_meta:  coefficient estimate

SEBETA_meta:  standard error

PVALUE_meta: raw p-value 

PVALUE_Q: p-value of Cochran’s Q

Model: FE (fixed effect) or RE2 (random effect)

PVALUE_meta_adj: adjusted p-value by false discovery rate

BP: Genomic positions are indicated in GRCh38 Genome Assembly

CHR: Chromosome
DOI: 10.5281/zenodo.14857204
title: Additional Supplement Data of the manuscript "Genome-Wide Association Study of Asthma Exacerbations in the Spanish Population"

description: For this manuscript we conducted a meta-analysis from genome-wide association study of asthma exacerbations in 345 adults from the Genomics and Metagenomics of Asthma Severity (GEMAS), 369 from Characterizing Alpha-1-Antitrypsin Deficiency in patients with pulmonary diseases (CAATDPUL), and 138 from MEchanisms involved in the Genesis and evolution of Asthma (MEGA) studies as discovery.

Summary statistics output is organized in the following columns:



RSID: Variant ID based on chromosome:position:effect allele:rsID

STUDY: number of studies or subsets were is present the probe

BETA_meta:  coefficient estimate

SEBETA_meta:  standard error

PVALUE_meta: raw p-value 

PVALUE_Q: p-value of Cochran’s Q

Model: FE (fixed effect) or RE2 (random effect)

PVALUE_meta_adj: adjusted p-value by false discovery rate

BP: Genomic positions are indicated in GRCh38 Genome Assembly

CHR: Chromosome
DOI: 10.22002/fg0xb-sv005
title: MP TopJ 27.5KX

description: Mycoplasma pneumonia TopJ mutant, attachment organelle
description: <strong>Tilt Series Date:</strong> 2010-03-31</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Mycoplasma pneumoniae</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-65.0°, 65.0°), step: 1°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> data collected by Jian; processed by Jian</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2010-03-31-10/rawdata/</p>10mar31a_B572c_016.mrc,  Tilt Series (Pixel Size 0.774 nm), 1.1 GB  
        
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        10mar31a_B572c_016_part.rec,  Reconstruction (Pixel Size 1.548 nm), 314.6 MB  
        
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        10mar31a_B572c_016_SIRT.rec,  Reconstruction (Pixel Size 0.0 nm), 524.3 MB  
        
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