cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17909/vt74-kd84
title: A SPectroscopic survey of biased halos In the Reionization Era (ASPIRE): A JWST Quasar Legacy Survey

description: This dataset contains deep NIRCam/WFSS and imaging observations of a flux-limited sample of 25 quasars at 6.5 < z <= 6.8. This program enables a powerful spectroscopic (WFSS mode) and imaging survey along the entire quasar light cones, resulting in the detection of thousand galaxies at 4 < z < 10, including a large number of galaxies physically associated with the central quasars. This dataset also provides deep images of the quasar host galaxies and close companion galaxies and high-quality rest-frame optical spectra of quasars. In addition, this dataset also includes coordinated NIRISS parallel imaging. For more details, please refer to https://www.stsci.edu/jwst/science-execution/program-information.html?id=2078
DOI: 10.18462/iir.icr.2023.0572
title: Barocaloric cooling and heating.
DOI: 10.5281/zenodo.10996648
title: Dataset for "Effect of the atomic structure of complexions on the active disconnection mode during shear-coupled grain boundary motion"

description: This repository contains the data of the simulations and theoreticalcalculations of the paper "Effect of the atomic structure of complexions on the active disconnection mode during shear-coupled grain boundary motion".
DOI: 10.5281/zenodo.12067622
title: A theoretical framework for learning through structural plasticity

description: This dataset contains the data and scripts used for the preprint:



Tiddia, G., Sergi, L., & Golosio, B. (2023). A theoretical framework for learning through structural plasticity. ArXiv. DOI: https://doi.org/10.48550/arXiv.2307.11735


The dataset contains a README file with all the instructions for compiling and running the model.
DOI: 10.5281/zenodo.7328050
title: Open database on global coal and metal mine production

description: This data set covers global extraction of coal and metal ores on an individual mine level. It covers<br> 1171 individual mines in 80 different countries, reporting mine-level production for 80 different materials in the period 2000-2021. Furthermore, also data on mining coordinates, ownership, mineral reserves, mining waste, transportation of mining products,as well as mineral processing capacities (smelters and mineral refineries) and production is included. The data was gathered manually from more than 1900 openly available sources, such as annual or sustainability reports of mining companies. All datapoints are linked to their respective source documents. After manual screening and entry of the data, automatic cleaning, harmonization and data checking was conducted. Geoinformation was obtained either from coordinates available in company reports, or by retrieving the coordinates via Google Maps API and subsequent manual checking. For mines where no coordinates could be found, other geospatial attributes such as province, region, district or municipality were recorded, and linked to the GADM data set, available at www.gadm.org. The data set consists of 12 tables. The table “facilities” contains descriptive and spatial information of mines and processing facilities, and is available as a GeoPackage (GPKG) file. All other tables are available in comma-separated values (CSV) format. A schematic depiction of the database is provided in the file database_model.png. A description of all variables of all tables is provided in the Excel file variables_descriptions.xlsx.
DOI: 10.5281/zenodo.7954932
title: Plant metabarcoding analysis in a Ptolemaic Egyptian Bes-vase

description: <strong>The investigation into origins and meaning of ancient religious rituals stands as a central pursuit within the fields of archaeology and anthropology. Today, we possess a wealth of well-preserved artifacts, often in their original form, that serve as compelling narratives from both cultural and material perspectives. Through the application of aDNA metabarcoding analysis, we have gained the ability to decipher those natural substances employed for ritualistic or medicinal purposes within the intricate and enigmatic religious and cultural framework of Egyptian civilization. </strong> <strong>here we deposit the sequences obtained from 16 mg of powder material recovered from the vase was processed for nucleic acid extraction in a laboratory area dedicated to the analysis of ancient DNA (aDNA). A brand new commercial kit, Quick-DNA Plant/Seed Kits (ZymoResearch), was used to extract the DNA, which was eluted in a volume of 50 µL. To ensure there were no possible contaminations, mock extractions without samples were systematically performed. DNA amplifications were conducted in a final volume of 25 µL, using 5 µL of undiluted DNA extract as the template. The amplification mixture contained 12.5 µL of AccuStart™ II PCR ToughMix (Quantabio), 0.1 µM of each primer, and 1 Evagreen to monitor the amplification kinetics on a BIO-RAD CFX96 thermal cycler. The mixture was denatured at 94°C for 3 minutes, followed by cycles of 15 seconds at 94°C, 10 seconds at 55°C, and 20 seconds at 72°C. The P6 loop region of the trnL (UAA) intron was amplified in triplicate using the universal primers g (5′-GGGCAATCCTGAGCCAA-3′) and h (5′-CCATTGAGTCTCTGCACCTATC-3′), which were modified by the addition of an adapter sequence (Illumina, San Diego, CA, USA) on the 5′ ends (81). Amplicon sequencing was performed using the 2 × 150-bp paired-end method on the MiSeq platform with a MiSeq Reagent Kit v2 Nano (Illumina). The reads obtained from the sequencing were processed using the CLC Genomics Workbench software environment ver. 22.0.</strong>
DOI: 10.5281/zenodo.8122490
title: Nonresonant scattering of energetic electrons by electromagnetic ion cyclotron waves: spacecraft observations and theoretical framework

description: This repository contains the simulation dataset, plotting scripts, and optimization package for the manuscript ``Nonresonant scattering of energetic electrons by electromagnetic ion cyclotron waves: spacecraft observations and theoretical framework''. *.h5 are snapshots of EMIC wave field (By and Bz) from deltaf-PIC simulations. test_particle.zip contains the test particle data in the wave field of deltaf-PIC simulations. *.py are plotting scripts to visualize the wave field, test particle simulation results, and theoretical predictions. optimization.zip contains the main subroutines for optimization of wave power spectrum to produce the measured electron precipitation. plt_style.txt is an auxillary style file for matplotlib plot.
DOI: 10.6084/m9.figshare.27685935
title: Supplementary Material for: Leber hereditary optic neuropathy “plus” with the m.14487 T&gt;C mutation as the causality of hemidystonia: A Case Report

description: Introduction: LHON complicated with extraocular symptoms is called LHON plus. We describe a case of Leber hereditary optic neuropathy (LHON) plus with a rare mutation, that also caused dystonia. Case Presentation: An 18-year-old male patient developed symptoms of dystonia at the age of 15 years. Two years later, he noticed decreased visual acuity and central scotoma in the left eye. One month later the same symptoms occurred in the right eye. Although the optic discs in both eyes revealed mildly redness and edematous change, no abnormal findings were detected on fluorescence fundus angiography and orbital magnetic resonance imaging. Mitochondrial deoxyribonucleic acid (mtDNA) sequencing detected the m.14487 T&gt;C mutation. From clinical course and fundus findings, the case was diagnosed LHON. The optic nerve gradually atrophied and central scotoma remained. Conclusion: The m.14487 T&gt;C mutation is one of the causative mutations in patients with dystonia or Leigh encephalopathy and a minor mutation in patients with LHON. However, in the present case, ocular symptoms were more severe than systematic symptoms and the disease course was consistent with LHON. For the above reasons, this case can be diagnosed as LHON plus. Whole mtDNA sequencing is important in diagnosing LHON if none of the three major mutations are detected.
DOI: 10.15156/bio/1264763
title: UNITE QIIME release for Fungi 2
DOI: 10.17632/57d9ymjz84.1
title: MacArgon document used to test accuracy of closure temperature calculation

description: The MacArgon document can be opened using §8 of the MacArgon program, and used to compute the bulk fusion age for Newtonian cooling, and the corresponding temperature-time point. This can be compared with predictions made using Dodson's formulae.
DOI: 10.18739/a2nv99c4p
title: Ground Penetrating Radar (GPR) data on snow over lakes and drained lake basins in Inigok, North Slope of Alaska, April 2019

description: This dataset contains ground penetrating radar (GPR) data acquired between April 27 and 28, 2019, on two drained lake basins (DLBs) [Three Creatures Basin and Deep Basin] and four lakes [Independent Fox Lake, INI01 Lake, INI04 Lake, and Lonely Wolf Lake] at Inigok region in the North Slope of Alaska. The measurements were made using Malå ProEx 800 megahertz (MHz) (GuidelineGeo, Sundbyberg, Sweden) antennas using common offset configuration. Raw GPR data of eight transects are provided in the .RAD3 format, along with the corresponding acquisition parameters (.RAD) and Global Positioning System (GPS) coordinates (.COR) files. A spreadsheet with basic information and a Keyhole Markup Language (KML) file indicating the location of each transect are also provided. This dataset can be used to estimate snow properties.
DOI: 10.24432/c5103b
title: Hungarian Chickenpox Cases
DOI: 10.24432/c5ng6w
title: Ozone Level Detection
DOI: 10.5066/p9ctt78o
title: Determination of the effect of temperature (Q10) on denitrification rates in sediments collected from a groundwater discharge site in Ashumet Pond on Cape Cod, MA

description: This data release presents results from a laboratory study designed to measure the effect of temperature on denitrification rates in sediments collected from 5- to 30-cm depth below the lake bottom, at a location where groundwater discharges to the lake. Sediment cores were collected June 25, 2014 from the West site (Fishermans Cove) in Ashumet Pond, Cape Cod, MA then shipped to Boulder, CO for laboratory experiments. Groundwater used for these experiments was collected from a well just upgradient of the sediment collection site. Denitrification rates were determined on sediment plus groundwater slurries maintained under anaerobic conditions and employing the acetylene block method. Nitrous oxide concentrations were measured several times over the course of an approximately 7-hour period in serum bottles containing 30 g sieved sediment (less than 2mm) combined with 30 mL filtered groundwater at 3 different incubation temperatures (4, 15, 24 degrees Celsius). Denitrification rates were calculated based on the accumulation of nitrous oxide over time in the serum bottles. The temperature coefficient, Q10, for the sediment in Ashumet Pond was calculated using these denitrification rates and was determined to be 4.9, meaning that the rate of denitrification increased by a factor of 4.9 for every 10 degrees of temperature increase.
DOI: 10.5281/zenodo.10642351
title: Assessment of the environmental impacts of the Cherenkov Telescope Array Mid-Sized Telescope

description: This record contains the spreadsheet comprising the Life Cycle Inventory (LCI) that was used for the Life Cycle Analysis (LCA) of one Mid-Sized Telescope deployed at the Cherenkov Telescope Array North Site on La Palma. Worksheets with names starting with "LCI_" contain the LCI data, workheets with names ending with "BOM" contain detailed lists of Bill Of Materials that were collected for the analysis.

The excel files and the Python script that was used to generate the figures in the paper are also available.
DOI: 10.5281/zenodo.10658313
title: Data underpinning "Noncoplanar orders and quantum disordered states in maple-leaf antiferromagnets"

description: A promising route towards the realization of chiral spin liquids is the quantum melting of classically noncoplanar spin states via quantum fluctuations. In the classical realm, such noncoplanar orders can effectively be stabilized by interactions beyond nearest neighbors. Motivated by the recent synthesis of materials with amaple-leaf lattice geometry, we study the effect of cross-plaquette couplings on elementary Heisenberg antiferromagnets for this geometry. We find a rich spectrum of noncoplanar states, including a novel icosahedral order as well as incommensurate spin spirals, using large-scale Monte Carlo simulations in combination witha semi-analytical analysis. To inspect the potential quantum melting of these states, we analyze the quantum S = 1/2 variant of these models using pseudo-fermion functional renormalization group (pf-FRG) simulations. Notably, we indeed find extended parameter regimes lacking long-range magnetic order – in regions classicallyoccupied by noncoplanar orders – which we putatively identify with the possible formation of chiral quantum spin liquids.
DOI: 10.5281/zenodo.10819228
title: Economic, institutional and environmental drivers of SME development for 21 EU states

description: SMEs are seen as important actors of national and regional development in many countries. This is a panel  data set on economic, institutional and environmental drivers of SME development for 21 EU states (Austria, Republic of Cyprus, Czech Republic, Denmark, Estonia, Finland, France, Germany, Hungary, Italy, Latvia, Lithuania, Luxembourg, Malta, Netherlands, Poland, Portugal, Romania, Slovakia, Slovenia and Spain) during 2011-2020 .
DOI: 10.5281/zenodo.11509036
title: Data for Bryan et al. (2024), The coevolution of migrating planets and their pulsating stars through episodic resonance locking.
DOI: 10.5281/zenodo.11558336
title: Chua et al. 2024 Kymographs of MeCP2 on Nucleosomes

description: Full kymographs of MeCP2, truncations, and RTT mutants on nucleosomes. Associated with manuscript by Chua et al. 2024.
DOI: 10.5281/zenodo.11559182
title: Chua et al. 2024 Kymographs of MeCP2 & TBLR1 on Chromatin

description: Full kymographs of MeCP2 and TBLR1 on DNA and nucleosomes. Associated with manuscript by Chua et al. 2024.
DOI: 10.5281/zenodo.13354510
title: Data for "Entanglement phases, localization and multifractality of monitored free fermions in two dimensions".

description: This folder contains the numerical data to reproduce all figures in the paper "Entanglement phases, localization and multifractality of monitored free fermions in two dimensions". All data are in csv format and were read and plotted on Jupyter notebooks. 

Each subfigure has an own subfolder where data is stored. For figures with insets there is a separate subfolder for the main plot and the inset, except the cases where inset and main use the same data (e.g. Fig. 3b). All data is obtained directly from simulations as outlined in the main text except fit data (e.g. Fig. 5a) or data obtained from a scaling collapse (inset of Fig. 3b).
DOI: 10.5281/zenodo.13924386
title: Adjacency matrices for Carril et al. 'Evolution of avian foot morphology through anatomical network analysis'

description: The adjacency matrices used in Carril et al. Evolution of avian foot morphology through anatomical network analysis (doi: https://doi.org/10.1038/s41467-024-54297-9), saved both in an Excel file and as individual .csv files for each matrix. The R script for the Anatomical Network Analysis used in the paper uses the .csv files as raw data, as these are easier to read and process in R. Abbreviations can be found in Supplementary Data 12 of the original paper.
DOI: 10.5281/zenodo.14015652
title: Dataset and code for article "Explicit description of viral capsid subunit shapes by unfolding dihedrons"

description: This repository contains data and codes used in a paper "Explicit description of viral capsid subunit shapes by expanding dihedrons" by Toyooka et al.

- [grasshopper/] contains a GH file used in the 3D CAD Rhinoceros/Grasshopper.- [docking_axes_viper/] contains notebooks for aligning the subunit coordinates with the VIPER coordinate system (Z-axis is the 2-fold axis, 3-fold axis is on the X-axis, and 5-fold axis is on the Y-axis)

- [docking_pairwise/] contains input scipts and analysis notebooks for pairwise docking simulations for subunits  - [1stm_zdock_iter/df.jld2] data containing top docking scores and poses, and screw motion parameters  - [1stm_zdock_iter/rmsd.jld2] RMSD data of docking poses with regard to the experimental structure  - [1stm_zdock_iter/run.sh] is a batch script for conducting docking simulations with ZDOCK  - [1stm_zdock_iter/run_each.sh] is a script for a single docking simulation with a specified random seed. Called from `run.sh`  - [1stm_zdock_iter/skrew_parameters.ipynb] analyzes the result of docking simulations. Sort the results accoring to docking scores and find the skrew axis of each docking pose  - [1stm_zdock_iter/visualize.ipynb] plots the docking score and the screw axis parameters, and also calculates and plots RMSDs from the reference structure (whole-shell structure)  - [1stm_zdock_iter/ref.pdb] is a sympolic link to a refrence structure (whole-shell structure)  - [4v4m_zdock_iter/] PDB ID: 4V4M  - [6s44_zdock_iter/] PDB ID: 6S44  - [7odw_zdock_iter/] PDB ID: 7ODW  - [3r0r_zdock_iter/] PDB ID: 3R0R  - [5zju_zdock_iter/] PDB ID: 5ZJU  - [1vb4_zdock_iter/] PDB ID: 1VB4  - [1m1c_zdock_iter/] PDB ID: 1M1C  - [6r7m_zdock_iter/] PDB ID: 6R7M  - [2m99_zdock_iter/] PDB ID: 2M99
DOI: 10.5281/zenodo.7198327
title: Ungulates mitigate the effects of drought and shrub encroachment on the fire hazard of Mediterranean oak woodlands

description: Dataset included: Shrub density; Shrub biomass; Fuel load of <em>Cistus ladanifer</em>; Fuel load herbs; Fuel load litter
DOI: 10.5281/zenodo.7415457
title: Data for the paper "Direct Microstability Optimization of Stellarator Devices"

description: This archive contains data and source code used for the paper "Direct Microstability Optimization of Stellarator Devices".
DOI: 10.5281/zenodo.8096648
title: HEMStoEC: Home Energy Management Systems to Energy Communities DataSet

description: The building sector is responsible for about 1/3 of all final energy consumed in the world. It is also responsible for about 30 % of CO<sup>2</sup> emissions from the end-use sector when accounting for indirect emissions from the use of electricity and heat in buildings. Focusing on EU, the use of electricity to satisfy the loads of lighting and most electrical appliances represents about 14.5 % of the energy consumed in residential sector, excluding heating and cooling systems, and 24.8 % including the latter. Therefore, we are in the presence of a sector that has a significant weight in the final energy consumption figures. Thus, innovative energy initiatives should contribute towards reducing energy consumption, reducing the effects on the climate, and achieving greater energy efficiency. These initiatives begin to emerge to a certain extent from small consumers, as they become more aware of environmental issues, either isolated or grouped in an energy community, where generated or stored energy is shared between stakeholders. In addition, energy markets go through a transition period and begin to give way, recognize, and promote the emerging role of prosumers (producers+consumers). It is within this context that this dataset is introduced. It allows, for a single prosumer, to: Test and validate different control strategies for home energy management systems; Design forecasting energy consumption models; Design forecasting PV energy generation models; Test and validate different non-invasive load monitoring (NILM) algorithms; Design forecasting thermal comfort models, as well as test and validate control strategies for Heating, Ventilation and Air Conditioning (HVAC) systems. Additionally, for a community of 4 houses, it allows to: Test and validate different control strategies for the community energy management system; Design forecasting community energy consumption models; Test and validate transfer learning strategies for NILM. The data, spanning more than three years, is stored in Matlab -v7 format, . This allows to be read by other languages, such as python.
DOI: 10.15468/dl.efqtw2
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Fungi)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "Geometry POLYGON((150 -82.5,157.5 -82.5,157.5 -75,150 -75,150 -82.5))"
 ]
}

 The dataset includes 11 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042288-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g2uuu8
title: Occurrence Download

description: A dataset containing 6500524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Germany",
 "DatasetKey is EOD – eBird Observation Dataset",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year 2016-2025"
 ]
}

 The dataset includes 6500524 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0042253-251009101135966/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/b5zsrm
title: Données naturalistes opportunistes issues de la plateforme INaturalist-Données naturalistes opportunistes "hobbelen"

description: Données naturalistes opportunistes saisies sur iNaturalist à partir du compte "hobbelen"
DOI: 10.13140/rg.2.2.14750.05446
title: THE USE OF HEURISTIC METHODS AND PROCEDURES IN THE TREATMENT OF MATHEMATICAL PROBLEMisS (
DOI: 10.13140/rg.2.2.26703.82080
title: Announcement of the Webinar "Human Rights in Theory and Practice: Lessons Learned from the Non-Persian Cases", organised by Alternative Perspectives & Global Concerns (ap-gc.net). The Webinar will take place on Thursday, July 29th, 2021 at 18:30 East Canada Time
DOI: 10.13140/rg.2.2.11971.32804
title: Matlab code to estimate material parameters for Chaboche kinematic hardening model of cyclic plasticity
DOI: 10.13140/rg.2.2.30360.72960
title: CITA DE MI TRABAJO. Relación médico paciente en un modelo de comunicación humana. En. Tratado de Cirugía General
DOI: 10.13140/rg.2.2.14107.80168
title: PEAKTOR: A Gamma-Ray Data Display and Analysis Software
DOI: 10.13140/rg.2.2.32143.30884
title: Structuring your article correctly
DOI: 10.13140/rg.2.2.31881.16486
title: CERTIFICATE: Value of Cochrane Reviews and Strength of Methodology
DOI: 10.13140/rg.2.2.11538.79048
title: General Bulletin 21-07-30
DOI: 10.13140/rg.2.2.22443.98086
title: Drugs and Gender 21-07-30
DOI: 10.15468/dl.wfdxzc
title: Occurrence Download

description: A dataset containing 7301 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sapindus drummondii Hook. & Arn."
 ]
}

 The dataset includes 7301 records from 129 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055916-231002084531237/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.