cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.swat5r
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea ornithoides R.C.Foster"
 ]
}

 The dataset includes 23 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154621-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdv3os
title: Occurrence Download

description: A dataset containing 270 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Regenrückhaltebecken (Zeulenroda)"
 ]
}

 The dataset includes 270 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005747-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hikatc
title: Occurrence Download

description: A dataset containing 597 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Sula dactylatra Lesson, 1831"
 ]
}

 The dataset includes 597 records from 31 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005747-171219132708484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c66jx2
title: Occurrence Download

description: A dataset containing 10 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea nivea S.A.Graham"
 ]
}

 The dataset includes 10 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154617-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lslgap
title: Occurrence Download

description: A dataset containing 26128 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Datura stramonium L."
 ]
}

 The dataset includes 26128 records from 376 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005748-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bfg5yz
title: Occurrence Download

description: A dataset containing 51 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea palustris Koehne"
 ]
}

 The dataset includes 51 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154625-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yjg6lm
title: Occurrence Download

description: A dataset containing 58162 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Equatorial Guinea"
 ]
}

 The dataset includes 58162 records from 239 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005748-160803222355964/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9svxwm
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea paucipetala S.A.Graham"
 ]
}

 The dataset includes 136 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154634-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p2gzxu
title: Occurrence Download

description: A dataset containing 38 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea paranensis Bacig."
 ]
}

 The dataset includes 38 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0154628-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ykigc1
title: Occurrence Download

description: A dataset containing 39 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Regenrückhaltebecken Bad Bevensen"
 ]
}

 The dataset includes 39 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005748-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.thbjkp
title: Occurrence Download

description: A dataset containing 302742 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Taraxacum officinale Weber ex F.H.Wigg.)"
 ]
}

 The dataset includes 302742 records from 2002 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016872-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rucjcf
title: Occurrence Download

description: A dataset containing 8 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Didymocarpus leiboensis Soong & W.T.Wang"
 ]
}

 The dataset includes 8 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025063-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5cplw6
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Nepal",
 "HasCoordinate is true",
 "TaxonKey is Hirundo daurica Linnaeus, 1771",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007640-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.255en7
title: Occurrence Download

description: A dataset listing the 1 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "TaxonKey is Streptopelia roseogrisea (Sundevall, 1857)",
 "Year 2000-2000"
 ]
}

 The dataset's 1 records were derived from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047056-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9zg932
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplazium beddomei C.Chr."
 ]
}

 The dataset includes 33 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025089-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a86s56
title: Occurrence Download

description: A dataset containing 540604 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "OccurrenceStatus is Present",
 "TaxonKey is Erinaceus europaeus Linnaeus, 1758",
 "Year 1990-2023"
 ]
}

 The dataset includes 540604 records from 1353 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047054-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5tke2f
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Diplazium bellum (C.B.Clarke) Bir"
 ]
}

 The dataset includes 68 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025100-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.o9jr3d
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Year 1990-2017",
 "Geometry POLYGON ((-93.71337890625 18.312810846425442, -93.31787109374999 16.97274101999902, -91.47216796875 17.18277905643184, -90.94482421875 17.26672782352052, -90.966796875 17.769612247142653, -89.97802734375 18.312810846425442, -90.02197265625 19.062117883514652, -90.4833984375 19.828725387681168, -93.71337890625 18.312810846425442))",
 "HasCoordinate is true",
 "TaxonKey is Cyclopes didactylus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007640-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yr9v3j
title: Occurrence Download

description: A dataset containing 3393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Observation",
 "OccurrenceStatus is Present",
 "TaxonKey is Reynoutria japonica Houtt."
 ]
}

 The dataset includes 3393 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047058-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.glpsdn
title: Occurrence Download

description: A dataset containing 740 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rollinia St.-Hil.",
 {
 "or" : [
 "Country is Uruguay",
 "Country is Chile",
 "Country is Paraguay",
 "Country is Colombia",
 "Country is Bolivia (Plurinational State of)",
 "Country is Venezuela (Bolivarian Republic of)",
 "Country is Brazil",
 "Country is Argentina",
 "Country is Guyana",
 "Country is Peru",
 "Country is Ecuador",
 "Country is French Guiana",
 "Country is Suriname"
 ]
 }
 ]
}

 The dataset includes 740 records from 79 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007641-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.v5a4at
title: Occurrence Download

description: A dataset containing 9453 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Iole propinqua (Oustalet, 1903)"
 ]
}

 The dataset includes 9453 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025122-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfat8z
title: Occurrence Download

description: A dataset containing 499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Occurrence evidence, Material sample, Material citation)",
 "Country is one of (Chile, Bolivia (Plurinational State of), Argentina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Leopardus geoffroyi (d'Orbigny & Gervais, 1844)"
 ]
}

 The dataset includes 499 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047160-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mkawuh
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Occurrence of mammalia relicts at site Remetehegy"
 ]
}

 The dataset includes 77 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007642-160822134323880/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m6a7sr
title: Occurrence Download

description: A dataset containing 455 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-130.24096 -37.28427,11.24096 -37.28427,11.24096 19.28427,-130.24096 19.28427,-130.24096 -37.28427))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ageneiosus ucayalensis Castelnau, 1855"
 ]
}

 The dataset includes 455 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025040-240314170635999/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9c9zh2
title: Occurrence Download

description: A dataset containing 28 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aeschynanthus irigaensis (Merr.) B.L.Burtt & P.Woods"
 ]
}

 The dataset includes 28 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017415-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqc8fg
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Lumbricus terrestris Linnaeus, 1758",
 "Country is Ireland",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is 2008",
 "DatasetKey is Earthworms of Ireland"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007641-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.t638tt
title: Occurrence Download

description: A dataset containing 3475429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Lynx lynx (Linnaeus, 1758), Canis lupus Linnaeus, 1758, Vulpes vulpes (Linnaeus, 1758), Ursus arctos Linnaeus, 1758, Gulo gulo (Linnaeus, 1758), Martes zibellina (Linnaeus, 1758), Meles leucurus (Hodgson, 1847), Mustela altaica Pallas, 1811, Mustela erminea Linnaeus, 1758, Mustela eversmanii Lesson, 1827, Capra sibirica (Pallas, 1776), Ovis ammon (Linnaeus, 1758), Moschus moschiferus Linnaeus, 1758, Alces alces (Linnaeus, 1758), Capreolus pygargus (Pallas, 1771), Cervus elaphus Linnaeus, 1758, Sus scrofa Linnaeus, 1758, Marmota baibacina Kastschenko, 1899, Ochotona alpina (Pallas, 1773), Lepus timidus Linnaeus, 1758, Lepus tolai Pallas, 1778, Lyrurus tetrix (Linnaeus, 1758), Perdix dauurica (Pallas, 1811), Perdix perdix (Linnaeus, 1758), Tetrao urogallus Linnaeus, 1758, Tetraogallus altaicus (Gebler, 1836), Tetraogallus himalayensis G.R.Gray, 1843, Tetrastes bonasia (Linnaeus, 1758), Coturnix coturnix (Linnaeus, 1758))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3475429 records from 4994 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0047250-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efp4gb
title: Occurrence Download

description: A dataset containing 544 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia argyi H.Lév. & Vaniot",
 "Year 1960-2024"
 ]
}

 The dataset includes 544 records from 50 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009654-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z5rd6x
title: Occurrence Download

description: A dataset containing 973653 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phragmites australis (Cav.) Trin. ex Steud."
 ]
}

 The dataset includes 973653 records from 2652 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009566-241107131044228/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pbwt88
title: Occurrence Download

description: A dataset containing 2352 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Trochodendron aralioides Siebold & Zucc.)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2352 records from 78 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016583-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kpnejz
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Robinsonella samaricarpa Fryxell)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016584-250127130748423/datasets/export for details.
DOI: 10.17909/m33s-hg28
title: JWST observations of 3C305

description: NIRSpec and MIRI IFU spectra of 3C305 from pid 4237 (P.I. P. Ogle).
DOI: 10.15468/dl.3s7sgw
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((97.04541 26.80834,100.95085 26.11876,101.05964 28.89824,97.14093 30.32294,97.04541 26.80834))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Rhododendron tapetiforme Balf.fil. & Kingdon-Ward"
 ]
}

 The dataset includes 41 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016586-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55ed2u
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Robinsonella speciosa Fryxell)",
 "BasisOfRecord is one of (Human Observation, Observation, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Continent is North America"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016588-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13799069
title: Duke Lung Cancer Screening Dataset 2024

description: Note - This is part 1 of the dataset.Part 1 can be found at : https://zenodo.org/records/13799069 Part 2 can be found at : https://zenodo.org/records/12784601Part 3 can be found at : https://zenodo.org/records/14659131

Background: Lung cancer risk classification is an increasingly important area of research as low-dose thoracic CT screening programs have become standard of care for patients at high risk for lung cancer. There is limited availability of large, annotated public databases for the training and testing of algorithms for lung nodule classification.

Methods: Screening chest CT scans done between January 1, 2015 and June 30, 2021 at Duke University Health System were considered for this study. Efficient nodule annotation was performed semi-automatically by using a publicly available deep learning nodule detection algorithm trained on the LUNA16 dataset to identify initial candidates, which were then accepted based on nodule location in the radiology text report or manually annotated by a medical student and a fellowship-trained cardiothoracic radiologist.

Results: The dataset contains 1613 CT volumes with 2487 annotated nodules, selected from a total dataset of 2061 patients, with the remaining data reserved for future testing. Radiologist spot-checking confirmed the semi-automated annotation had an accuracy rate of >90%.

Conclusions: The Duke Lung Cancer Screening Dataset 2024 is the first large dataset for CT screening for lung cancer reflecting the use of current CT technology. This represents a useful resource of lung cancer risk classification research, and the efficient annotation methods described for its creation may be used to generate similar databases for research in the future.Dataset part Details:Part 1: DLCS subset 1 to 7 and, metadata and Annotations.Part 2: DLCS subset 8,9 and CT image info metadata.Part 3: DLCS subset 10.

Updates and Versions:



Part 1, Version 1.0 (Published on [03/05/2024]): Released initial dataset, including partial data subsets 1 to 7 and 3D bounding box annotations of the lung nodules.

Part 1, Version 1.1 (Published on [09/19/2024]): Added metadata file (DLCSD24_metadata_v1.1.xlsx) and updated the dataset description and title. 10.5281/zenodo.13799069

Part 2, Version 1.0 (Published on [02/04/2025]): Released DLCS subset 8,9, CT image info metadata (DLCSD24_CT_ImageInfo_v1.csv and metadata documentation).

Part 3, Version 1.0 (Published on [02/04/2025]): Released DLCS subset 10.


Code Repository:To support reproducible open-access research and benchmarking, we have shared several pre-trained models and baseline results in a GitHub and GitLab repository.

GitLab: https://gitlab.oit.duke.edu/cvit-public/ai_lung_health_benchmarkingGitHub: https://github.com/fitushar/AI-in-Lung-Health-Benchmarking-Detection-and-Diagnostic-Models-Across-Multiple-CT-Scan-Datasets

Funding:This work was supported by the Duke Department of Radiology Charles E. Putman Vision Award, NIH/NIBIB P41-EB028744, and NIH/NCI R01-CA261457.