cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3679036_d3.v1
title: Additional file 9: Table S6. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Promoter analysis of MIR166 family genes in soybean. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3679036_d2.v1
title: Additional file 11: Table S8. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Primers used for Real-time PCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3679036_d3
title: Additional file 9: Table S6. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Promoter analysis of MIR166 family genes in soybean. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3679036_d2
title: Additional file 11: Table S8. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Primers used for Real-time PCR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3679036_d1
title: Additional file 10: Table S7. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Summary of UTSs and targets of miR166s. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3679036_d1.v1
title: Additional file 10: Table S7. of Conservation and diversification of the miR166 family in soybean and potential roles of newly identified miR166s

description: Summary of UTSs and targets of miR166s. (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3679015_d4.v1
title: Additional file 1: Table S1. of High throughput 16SrRNA gene sequencing reveals the correlation between Propionibacterium acnes and sarcoidosis

description: Sequencing data of the 36 tissue speciments. (XLS 15Â kb)
DOI: 10.15468/dl.6udbxa
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cetorhinus maximus (Gunnerus, 1765)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 7 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035572-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3678985_d5.v1
title: Additional file 10: of Lower serum uric acid level strongly predict short-term poor functional outcome in acute stroke with normoglycaemia: a cohort study in China

description: Which involves 2907 patients’ information across from the essential information such as age,gender,educational level, etc., to the variables including in our data analysis such as SUA levels, diagnosis of glycometabolism status, functional outcomes (poor or good) and so on. Each variable has its meaning and number 1,2,3 or more stands for the different meanings of each variable. For example, as for the variable “gender”, 1 stands for “male” and 2 stands for “female”. (XLS 912 kb)
DOI: 10.6084/m9.figshare.c.3678985_d5
title: Additional file 10: of Lower serum uric acid level strongly predict short-term poor functional outcome in acute stroke with normoglycaemia: a cohort study in China

description: Which involves 2907 patients’ information across from the essential information such as age,gender,educational level, etc., to the variables including in our data analysis such as SUA levels, diagnosis of glycometabolism status, functional outcomes (poor or good) and so on. Each variable has its meaning and number 1,2,3 or more stands for the different meanings of each variable. For example, as for the variable “gender”, 1 stands for “male” and 2 stands for “female”. (XLS 912 kb)
DOI: 10.6084/m9.figshare.c.3678994_d4
title: Additional file 2: Table S2. of Gut microbiota dysbiosis contributes to the development of hypertension

description: Data production of 196 samples in control, pHTN and HTN. Table S3. Relative abundance profile at the phylum level. Table S4. Relative abundance profile at the genus level. Table S5. Detailed information of differential genera. Table S6. Information of 6 samples in the verification phase. Table S7. Relative abundance profile at the genus level of 6 samples in the verification phase. Table S9. Reference genomes for CAGâ  s taxonomy assignment. Table S10. Detailed information of enriched CAGs in different groups. Table S11. Detailed information of 1099 CAGs. Table S12. Spearmanâ  s correlation between enriched CAGs. Table S13. Detailed information of differential KEGG modules. Table S14. Detailed information of differential KEGG orthologys. Table S15. Detailed information of differential CAZy family. Table S16. Detailed information of 26 metabolites differently enriched across groups. Table S18. Data production for donors and recipient mice in microbiota transplantation. Table S19. Relative abundance profile at the genus level of donors and recipient mice. (XLSX 4171 kb)
DOI: 10.6084/m9.figshare.c.3678994_d4.v1
title: Additional file 2: Table S2. of Gut microbiota dysbiosis contributes to the development of hypertension

description: Data production of 196 samples in control, pHTN and HTN. Table S3. Relative abundance profile at the phylum level. Table S4. Relative abundance profile at the genus level. Table S5. Detailed information of differential genera. Table S6. Information of 6 samples in the verification phase. Table S7. Relative abundance profile at the genus level of 6 samples in the verification phase. Table S9. Reference genomes for CAGâ  s taxonomy assignment. Table S10. Detailed information of enriched CAGs in different groups. Table S11. Detailed information of 1099 CAGs. Table S12. Spearmanâ  s correlation between enriched CAGs. Table S13. Detailed information of differential KEGG modules. Table S14. Detailed information of differential KEGG orthologys. Table S15. Detailed information of differential CAZy family. Table S16. Detailed information of 26 metabolites differently enriched across groups. Table S18. Data production for donors and recipient mice in microbiota transplantation. Table S19. Relative abundance profile at the genus level of donors and recipient mice. (XLSX 4171 kb)
DOI: 10.6084/m9.figshare.c.3678916_d10.v1
title: Additional file 9: Table S5. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Gene set enrichment analysis using gProfiler. (XLSX 743 kb)
DOI: 10.6084/m9.figshare.c.3678916_d10
title: Additional file 9: Table S5. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Gene set enrichment analysis using gProfiler. (XLSX 743 kb)
DOI: 10.6084/m9.figshare.c.3678916_d9
title: Additional file 10: Table S6. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Gene set enrichment analysis using Fisherâ  s exact test. (XLSX 1040 kb)
DOI: 10.6084/m9.figshare.c.3678916_d9.v1
title: Additional file 10: Table S6. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Gene set enrichment analysis using Fisherâ  s exact test. (XLSX 1040 kb)
DOI: 10.15468/dl.gkgxn8
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Squalus maximus Gunnerus, 1765",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035573-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3678931_d8.v1
title: Additional file 3: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

description: Swissprot annotation for the total unigenes generated from the pooling transcriptome assembly. (XLS 4955 kb)
DOI: 10.6084/m9.figshare.c.3678916_d7.v1
title: Additional file 6: Table S4. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Tables of the collected human, chicken, bovine lncRNAs. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3678931_d8
title: Additional file 3: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

description: Swissprot annotation for the total unigenes generated from the pooling transcriptome assembly. (XLS 4955 kb)
DOI: 10.6084/m9.figshare.c.3678916_d7
title: Additional file 6: Table S4. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Tables of the collected human, chicken, bovine lncRNAs. (XLSX 90 kb)
DOI: 10.6084/m9.figshare.c.3678916_d6
title: Additional file 4: Table S3. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: 2,949 identified transcripts information. (XLSX 517 kb)
DOI: 10.6084/m9.figshare.c.3678916_d6.v1
title: Additional file 4: Table S3. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: 2,949 identified transcripts information. (XLSX 517 kb)
DOI: 10.6084/m9.figshare.c.3678931_d4.v1
title: Additional file 6: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

description: This table provides all differentially expressed genes meeting the threshold (FDR ≤ 0.01) and the GO terms that the differentially expressed genes were enriched. (XLS 207 kb)
DOI: 10.6084/m9.figshare.c.3678916_d5.v1
title: Additional file 3: Table S2. of Identification and evolutionary analysis of long non-coding RNAs in zebra finch

description: Information of the annotated genes. (XLSX 1440 kb)
DOI: 10.6084/m9.figshare.c.3678931_d4
title: Additional file 6: of Transcriptome profiling of the floating-leaved aquatic plant Nymphoides peltata in response to flooding stress

description: This table provides all differentially expressed genes meeting the threshold (FDR ≤ 0.01) and the GO terms that the differentially expressed genes were enriched. (XLS 207 kb)
DOI: 10.15468/dl.ypzwe4
title: Occurrence Download

description: A dataset containing 1846 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Symphorus nematophorus (Bleeker, 1860)"
 ]
}

 The dataset includes 1846 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035575-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3678751_d2.v1
title: Additional file 1: of Investigation of coordination and order in transcription regulation of innate and adaptive immunity genes in type 1 diabetes

description: Table S1. Innate & adaptive immunity genes. Table S2. Activated protein complexes. Table S3. GSEA results of the expression difference of innate and adaptive immunity genes between RO-T1D and uHC. Table S4. Hub genes in co-expression networks of innate & adaptive immunity genes. Hub genes are fined to be those whose network degrees are in the top 5. (XLSX 484Â kb)
DOI: 10.6084/m9.figshare.c.3677761_d1.v1
title: Additional file 2: of The integration of weighted human gene association networks based on link prediction

description: data of our final integrated network FINet. (TXT 374277 kb)
DOI: 10.6084/m9.figshare.c.3677761_d1
title: Additional file 2: of The integration of weighted human gene association networks based on link prediction

description: data of our final integrated network FINet. (TXT 374277 kb)
DOI: 10.6084/m9.figshare.c.3676621_d8.v1
title: Additional file 9: of iTRAQ-based Protein Profiling and Fruit Quality Changes at Different Development Stages of Oriental Melon

description: The proteins differentially expressed in four maturity stages of oriental melon. (XLSX 2405 kb)
DOI: 10.6084/m9.figshare.c.3676621_d8
title: Additional file 9: of iTRAQ-based Protein Profiling and Fruit Quality Changes at Different Development Stages of Oriental Melon

description: The proteins differentially expressed in four maturity stages of oriental melon. (XLSX 2405 kb)
DOI: 10.5281/zenodo.14498400
title: Maryland Real Property Parcel Boundaries

description: This data is available in the public domain
DOI: 10.5281/zenodo.14498401
title: Maryland Real Property Parcel Boundaries

description: This data is available in the public domain
DOI: 10.15468/dl.tefu3a
title: Occurrence Download

description: A dataset containing 438 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Thamnaconus modestus (Günther, 1877)",
 "Geometry POLYGON((170 20, 170 50, 120 50, 120 20, 170 20))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 438 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0035577-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3676585_d8
title: Additional file 9: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Vascular development genes and their expression levels in S. moellendorffii. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3676585_d7.v1
title: Additional file 6: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Alternative splicing events of known coding genes and novel coding genes. (XLSX 902 kb)
DOI: 10.6084/m9.figshare.c.3676585_d7
title: Additional file 6: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Alternative splicing events of known coding genes and novel coding genes. (XLSX 902 kb)
DOI: 10.6084/m9.figshare.c.3676585_d6.v1
title: Additional file 7: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Tissue-specific expression of coding genes in S. moellendorffii. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3676585_d6
title: Additional file 7: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Tissue-specific expression of coding genes in S. moellendorffii. (XLSX 131 kb)
DOI: 10.6084/m9.figshare.c.3676585_d5.v1
title: Additional file 2: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Novel noncoding RNAs. (XLSX 634 kb)
DOI: 10.6084/m9.figshare.c.3676585_d5
title: Additional file 2: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Novel noncoding RNAs. (XLSX 634 kb)
DOI: 10.6084/m9.figshare.c.3676585_d4.v1
title: Additional file 8: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Tissue-specific expression of lncRNAs in S. moellendorffii. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.c.3676585_d4
title: Additional file 8: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Tissue-specific expression of lncRNAs in S. moellendorffii. (XLSX 41 kb)
DOI: 10.6084/m9.figshare.27320703
title: The association of schooling, sibling life situation, and dietary habits with the estimated 24-h urinary salt excretion and sodium-to-potassium ratio in 3-year-old children

description: We examined the association of schooling, sibling life situation, and dietary habits with the estimated 24-h urinary salt excretion and the urinary sodium-to-potassium (Na/K) ratio in 3-year-old children. The subjects were 639 children who underwent a health checkup in four cities and towns in Kyoto Prefecture from January to November 2019. The children’s parents answered questionnaires about weekday childcare places, the birth order, and the awareness of reducing the salt intake. The questions on food intake frequency included 10 items. The estimated 24-h salt excretion and Na/K ratio were calculated from the participants’ first voiding urine in the morning. Data were available for 294 children. The median (interquartile range (IQR)) of salt excretion (g/day) was 2.6 (1.7–3.4), and urinary Na/K ratio (mmol ratio) was 2.6 (1.6–4.1). Multinomial logistic regression analysis showed that the group with older siblings was significantly associated with high salt (odds ratio 1.89 (95% confidence interval 1.04 to 3.46)). In the urinary Na/K ratio, the nursery group had a significantly lower Na/K (odds ratio 0.32 (0.17 to 0.60)). High processed meat products intake was associated with a higher Na/K (odds ratio 1.96 (1.05–3.66)), whereas high vegetable intake was associated with a lower Na/K (odds ratio 0.45 (0.23–0.87)). Other factors showed no significant associations. In Japanese 3-year-old children, the estimated 24-h urinary salt excretion was associated with older siblings, and the urinary Na/K ratios were associated with schooling situation and the intake of processed meat products and vegetables.
DOI: 10.6084/m9.figshare.27320703.v1
title: The association of schooling, sibling life situation, and dietary habits with the estimated 24-h urinary salt excretion and sodium-to-potassium ratio in 3-year-old children

description: We examined the association of schooling, sibling life situation, and dietary habits with the estimated 24-h urinary salt excretion and the urinary sodium-to-potassium (Na/K) ratio in 3-year-old children. The subjects were 639 children who underwent a health checkup in four cities and towns in Kyoto Prefecture from January to November 2019. The children’s parents answered questionnaires about weekday childcare places, the birth order, and the awareness of reducing the salt intake. The questions on food intake frequency included 10 items. The estimated 24-h salt excretion and Na/K ratio were calculated from the participants’ first voiding urine in the morning. Data were available for 294 children. The median (interquartile range (IQR)) of salt excretion (g/day) was 2.6 (1.7–3.4), and urinary Na/K ratio (mmol ratio) was 2.6 (1.6–4.1). Multinomial logistic regression analysis showed that the group with older siblings was significantly associated with high salt (odds ratio 1.89 (95% confidence interval 1.04 to 3.46)). In the urinary Na/K ratio, the nursery group had a significantly lower Na/K (odds ratio 0.32 (0.17 to 0.60)). High processed meat products intake was associated with a higher Na/K (odds ratio 1.96 (1.05–3.66)), whereas high vegetable intake was associated with a lower Na/K (odds ratio 0.45 (0.23–0.87)). Other factors showed no significant associations. In Japanese 3-year-old children, the estimated 24-h urinary salt excretion was associated with older siblings, and the urinary Na/K ratios were associated with schooling situation and the intake of processed meat products and vegetables.
DOI: 10.6084/m9.figshare.c.3676585_d3
title: Additional file 1: of Global transcriptome analysis reveals extensive gene remodeling, alternative splicing and differential transcription profiles in non-seed vascular plant Selaginella moellendorffii

description: Novel coding genes. (XLSX 1368 kb)
DOI: 10.6084/m9.figshare.25097405
title: Exploration and validation of signature genes and immune associations in septic cardiomyopathy

description: An early and accurate diagnosis of septic cardiomyopathy is vital for improving the overall prognosis of sepsis. In our research, we aimed to identify signature genes and their immune connections in septic cardiomyopathy. By analyzing the mouse myocardial transcriptome from sepsis induced by cecum ligation and puncture (CLP), we identified four distinct k-means clusters. Further analysis of human myocardial datasets using Weighted Gene Co-expression Network Analysis (WGCNA) revealed a strong correlation between the MEturquoise module and septic cardiomyopathy (cor = 0.79, <i>p</i> &lt; .001). Through the application of Cytoscape plug-in MCODE and comprehensive analysis, we pinpointed two signature genes, THBS1 and TIMP1. These genes demonstrated significant involvement in immune cell infiltration, as detected by CIBERSORT, and displayed promising prognostic potential as validated by external datasets. Our experimental validation confirmed the up-regulation of both THBS1 and TIMP1 in septic murine hearts, underscoring their positive association with septic cardiomyopathy.
DOI: 10.6084/m9.figshare.26543569
title: Causal relationship between gut microbiota, plasma metabolites, inflammatory cytokines and abdominal aortic aneurysm: a Mendelian randomization study

description: Complex interconnections are evident among gut microbiota, circulating metabolites, inflammatory cytokines, and the pathogenesis of abdominal aortic aneurysms (AAA), with the causal dynamics yet to be comprehensively elucidated. The primary objective of this study was to elucidate the potential causal relationships involving gut microbiota-mediated plasma metabolites, inflammatory cytokines, and AAA. We utilized data from genome-wide association studies predominantly comprising individuals of European ancestry, encompassing four major gut microbiota signatures, 233 plasma metabolite signatures (<i>N</i> = 136,016), 91 inflammatory cytokine signatures (<i>N</i> = 14,824), and AAA signatures (<i>N</i> = 1,458,875). Mendelian randomization (MR), employed in a two-sample format, was utilized as a tool to investigate the potential causal pathways from gut microbiota to the development of AAA. Additionally, a two-step MR approach was employed to dissect the impact of plasma metabolites and inflammatory cytokines on the relationship between gut microbiota and AAA and to ascertain the mediated fractions. Our findings indicate that five phylum or family-identical bacteria, 175 plasma metabolites, and seven inflammatory factors are causally associated with AAA. Among them, five bacterial species from the same phylum or family, identified from different GWAS data, were strongly associated with AAA. Of these, two exhibited negative causality and three exhibited positive causality. We found that the phylum <i>Firmicutes</i> and the families <i>Oscillospiraceae</i> might reduce the risk of AAA, whereas the families <i>Prevotellaceae</i>, <i>Sutterellaceae</i>, and <i>Aminobacteriaceae</i> might increase the risk of AAA. Further screening indicated that phylum <i>Firmicutes</i> id.1672 (GCST90017114) may confer a protective effect against AAA by reducing triglyceride levels in medium/small high-density lipoprotein (HDL). MR analysis has delineated a causal pathway from gut microbiota, through plasma circulating metabolites and inflammatory cytokines, to the pathogenesis of AAA. The role of intestinal flora and certain biomarkers may provide a reference for the diagnosis of AAA, and contribute to the prevention, diagnosis, and treatment of AAA disease.