cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.6kvrqb
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((116.084 -1.69882, 116.013706 -1.704386, 115.945142 -1.720946, 115.879994 -1.748092, 115.819866 -1.785158, 115.766238 -1.831229, 115.72043 -1.885174, 115.683569 -1.945664, 115.656565 -2.01121, 115.640082 -2.080199, 115.634528 -2.150933, 115.640041 -2.221671, 115.656487 -2.290669, 115.683462 -2.35623, 115.720304 -2.416738, 115.766106 -2.470703, 115.81974 -2.516795, 115.879887 -2.553878, 115.945064 -2.581039, 116.013665 -2.597608, 116.084 -2.603177, 116.154335 -2.597608, 116.222936 -2.581039, 116.288113 -2.553878, 116.34826 -2.516795, 116.401894 -2.470703, 116.447696 -2.416738, 116.484538 -2.35623, 116.511513 -2.290669, 116.527959 -2.221671, 116.533472 -2.150933, 116.527918 -2.080199, 116.511435 -2.01121, 116.484431 -1.945664, 116.44757 -1.885174, 116.401762 -1.831229, 116.348134 -1.785158, 116.288006 -1.748092, 116.222858 -1.720946, 116.154294 -1.704386, 116.084 -1.69882))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002281-260119153935675/datasets/export for details.
DOI: 10.5281/zenodo.18310385
title: CSO and gold slides
DOI: 10.5281/zenodo.18310646
title: SGUFT — Appendix W10 (PHYSSTATE1) v1.0 — Physical-State Conditions and De-duplication Audit (evidence / only / summary bundles)

description: This record provides the reproducible artifacts for SGUFT Appendix W10 (PHYSSTATE1).

PHYSSTATE1 implements an auditable PASS/FAIL adjudication for the “physical-state” gate, combining:





physical-state consistency conditions, and




a de-duplication audit over candidate state assignments,



under a fixed tolerance and a fully checkable manifest/audit chain.

Contents

This record contains three ZIP bundles:





evidence pack: full reproducibility bundle with audit logs and integrity manifests




only pack: minimal reproducibility bundle (same core layout and outputs)




summary pack: public-facing summary outputs (CSV/JSON) with an integrity manifest





The Appendix text (DOCX) is distributed separately (DOI-only; intended for arXiv) and is not included in this record.


Integrity check

Each bundle includes manifest_sha256.json. After extraction, recompute SHA-256 hashes and compare them against the manifest entries.

Rebuild from the evidence pack

After extraction:







 



cd RUN_G_PHYS_0001_PHYSSTATE1/w10/physstate1
python build/extract_snapshots_physstate1.py
python build/build_physstate1_from_snapshots.py
python build/generate_physstate1_summary.py
python build/generate_manifest_audit.py



Notes on provenance

PHYSSTATE1 evaluates against provenance-locked upstream references. Exact upstream identifiers are provided as DOI-only references in the associated appendix documentation.
DOI: 10.5281/zenodo.18310647
title: SGUFT — Appendix W10 (PHYSSTATE1) v1.0 — Physical-State Conditions and De-duplication Audit (evidence / only / summary bundles)

description: This record provides the reproducible artifacts for SGUFT Appendix W10 (PHYSSTATE1).

PHYSSTATE1 implements an auditable PASS/FAIL adjudication for the “physical-state” gate, combining:





physical-state consistency conditions, and




a de-duplication audit over candidate state assignments,



under a fixed tolerance and a fully checkable manifest/audit chain.

Contents

This record contains three ZIP bundles:





evidence pack: full reproducibility bundle with audit logs and integrity manifests




only pack: minimal reproducibility bundle (same core layout and outputs)




summary pack: public-facing summary outputs (CSV/JSON) with an integrity manifest





The Appendix text (DOCX) is distributed separately (DOI-only; intended for arXiv) and is not included in this record.


Integrity check

Each bundle includes manifest_sha256.json. After extraction, recompute SHA-256 hashes and compare them against the manifest entries.

Rebuild from the evidence pack

After extraction:







 



cd RUN_G_PHYS_0001_PHYSSTATE1/w10/physstate1
python build/extract_snapshots_physstate1.py
python build/build_physstate1_from_snapshots.py
python build/generate_physstate1_summary.py
python build/generate_manifest_audit.py



Notes on provenance

PHYSSTATE1 evaluates against provenance-locked upstream references. Exact upstream identifiers are provided as DOI-only references in the associated appendix documentation.
DOI: 10.15468/dl.3bqg8c
title: Occurrence Download

description: A dataset containing 201 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acrobasis vaccinii"
 ]
}

 The dataset includes 201 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002282-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cb4cvb
title: Occurrence Download

description: A dataset containing 913 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Stachys recta, Stachys recta, Stachys recta, Stachys recta)",
 "Geometry POLYGON ((8.643 46.99, 14.1 46.92, 14.43 50.75, 8.534 50.83, 8.643 46.99))",
 "Year is greater than or equal to 2010",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "CoordinateUncertaintyInMeters is less than or equal to 50",
 "BasisOfRecord is one of (Observation, Human Observation, Machine Observation, Material sample)"
 ]
}

 The dataset includes 913 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002283-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fnudeq
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((147.707 -8.402917, 147.635979 -8.408477, 147.5667 -8.425018, 147.500864 -8.452135999999999, 147.440088 -8.489164000000001, 147.385866 -8.535194000000001, 147.339531 -8.589095, 147.302225 -8.649543, 147.27487 -8.715052, 147.258142 -8.784011, 147.252461 -8.854723999999999, 147.257971 -8.92545, 147.274543 -8.994448, 147.301776 -9.060017, 147.339003 -9.12054, 147.385311 -9.174524, 147.439561 -9.220637999999999, 147.500415 -9.257740999999999, 147.566374 -9.284919, 147.635807 -9.301499, 147.707 -9.307072, 147.778193 -9.301499, 147.847626 -9.284919, 147.913585 -9.257740999999999, 147.974439 -9.220637999999999, 148.028689 -9.174524, 148.074997 -9.12054, 148.112224 -9.060017, 148.139457 -8.994448, 148.156029 -8.92545, 148.161539 -8.854723999999999, 148.155858 -8.784011, 148.13913 -8.715052, 148.111775 -8.649543, 148.074469 -8.589095, 148.028134 -8.535194000000001, 147.973912 -8.489164000000001, 147.913136 -8.452135999999999, 147.8473 -8.425018, 147.778021 -8.408477, 147.707 -8.402917))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002284-260119153935675/datasets/export for details.
DOI: 10.15468/dl.ayyykm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{"type":"and","predicates":[{"type":"within","geometry":"POLYGON ((112.294 -1.69682, 112.223706 -1.702386, 112.155142 -1.718946, 112.089994 -1.746092, 112.029866 -1.783158, 111.976238 -1.829229, 111.93043 -1.883174, 111.89357 -1.943664, 111.866565 -2.00921, 111.850082 -2.0782, 111.844528 -2.148933, 111.850041 -2.219671, 111.866487 -2.288669, 111.893463 -2.35423, 111.930304 -2.414738, 111.976106 -2.468703, 112.029741 -2.514795, 112.089887 -2.551878, 112.155064 -2.579039, 112.223665 -2.595608, 112.294 -2.601177, 112.364335 -2.595608, 112.432936 -2.579039, 112.498113 -2.551878, 112.558259 -2.514795, 112.611894 -2.468703, 112.657696 -2.414738, 112.694537 -2.35423, 112.721513 -2.288669, 112.737959 -2.219671, 112.743472 -2.148933, 112.737918 -2.0782, 112.721435 -2.00921, 112.69443 -1.943664, 112.65757 -1.883174, 112.611762 -1.829229, 112.558134 -1.783158, 112.498006 -1.746092, 112.432858 -1.718946, 112.364294 -1.702386, 112.294 -1.69682))"},{"type":"equals","key":"CLASS_KEY","value":"212","matchCase":false},{"type":"greaterThanOrEquals","key":"YEAR","value":"2015","matchCase":false},{"type":"not","predicate":{"type":"in","key":"BASIS_OF_RECORD","values":["MATERIAL_CITATION","MATERIAL_SAMPLE","PRESERVED_SPECIMEN"],"matchCase":false}},{"type":"lessThanOrEquals","key":"COORDINATE_UNCERTAINTY_IN_METERS","value":"10000","matchCase":false},{"type":"equals","key":"LICENSE","value":"CC BY 4.0","matchCase":false}]}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002287-260119153935675/datasets/export for details.
DOI: 10.15468/dl.6vfpte
title: Occurrence Download

description: A dataset containing 347 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-7.47191 37.31413,-5.78994 35.89813,-4.55922 36.09727,-2.83623 36.362,-1.97473 36.85596,-0.78504 37.6072,-0.70299 38.57577,-1.31835 38.99149,-2.9593 38.99149,-5.05151 38.79992,-6.65143 38.5116,-7.47191 37.31413))",
 "HasGeospatialIssue is false",
 "TaxonKey is Paeonia coriacea"
 ]
}

 The dataset includes 347 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002285-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.du8dve
title: Occurrence Download

description: A dataset containing 214 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Spain",
 "OccurrenceStatus is Present",
 "TaxonKey is Paeonia coriacea"
 ]
}

 The dataset includes 214 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002286-260119153935675/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5525/gla.researchdata.1949
title: An Integrated Plasmonic Sensing Array for Chemical Fingerprinting and Flavour Profiling in Beverages and Other Liquids

description: Sensor response to liquid classes tested.
DOI: 10.17632/mg3pw5mmd8.1
title: The spatial transcriptomic pattern analyses of human embryonic tooth development during cap to early bell stage

description: The spatial transcriptomic sequencing and single-nuclei RNA sequencing (snRNA-seq) on human embryonic tooth germ sourced from healthy aborted specimens from the cap-to-early bell stage (post-conception weeks 12 to 18).
DOI: 10.17632/39h9sw2zct
title: Conjugated linoleic acid derived from the intestinal flora of Min pigs mediates resistance to PEDV infection in piglets

description: While gut microbiota are essential for host health regulation, the impact of microbiota-host interactions on disease resistance phenotypes is not yet fully understood. We explore the link between gut microbiota and disease resistance in Min piglets using single-cell RNA sequencing (scRNA-seq), 16S rDNA sequencing, and untargeted metabolomics. This study identified that disease resistance in Min pigs was directly associated with gut microbiota. A multi-omics analysis identified differential cecal microbiota, specifically Lactobacillus, and metabolites associated with riboflavin metabolism, linoleic acid metabolism, and fatty acid biosynthesis pathways following ABX treatment. Study further proved in vitro that Lactobacillus plantarum can convert linoleic acid into conjugated linoleic acid (CLA). CLA influences Porcine epidemic diarrhea virus (PEDV) infection by interacting with fatty acid binding protein 6 (FABP6) and the PEDV S protein, leading to increased expression of interferon-stimulated genes (ISGs), which enhances antiviral responses and mitigates ileum microstructural damage. These results demonstrate a cause-and-effect link between gut bacteria and disease resistance traits, indicating that improving intestinal health might be possible by focusing on gut microbiota and fatty acid metabolism.
DOI: 10.17632/39h9sw2zct.1
title: Conjugated linoleic acid derived from the intestinal flora of Min pigs mediates resistance to PEDV infection in piglets

description: While gut microbiota are essential for host health regulation, the impact of microbiota-host interactions on disease resistance phenotypes is not yet fully understood. We explore the link between gut microbiota and disease resistance in Min piglets using single-cell RNA sequencing (scRNA-seq), 16S rDNA sequencing, and untargeted metabolomics. This study identified that disease resistance in Min pigs was directly associated with gut microbiota. A multi-omics analysis identified differential cecal microbiota, specifically Lactobacillus, and metabolites associated with riboflavin metabolism, linoleic acid metabolism, and fatty acid biosynthesis pathways following ABX treatment. Study further proved in vitro that Lactobacillus plantarum can convert linoleic acid into conjugated linoleic acid (CLA). CLA influences Porcine epidemic diarrhea virus (PEDV) infection by interacting with fatty acid binding protein 6 (FABP6) and the PEDV S protein, leading to increased expression of interferon-stimulated genes (ISGs), which enhances antiviral responses and mitigates ileum microstructural damage. These results demonstrate a cause-and-effect link between gut bacteria and disease resistance traits, indicating that improving intestinal health might be possible by focusing on gut microbiota and fatty acid metabolism.
DOI: 10.17632/8ysv63ybdw.1
title: Synergistic effects of denitrifying bacteria and Soil Solidification Rock on the durability of recycled aggregate concrete: resistance to sulfate attack and microscopic mechanisms

description: Compressive strength and mass data from SSR RAC sulfate dry and wet cycle tests, XRD, SEM, and FTIR test results; SEM-EDS test results of RCA before and after mineralization modification by denitrifying bacteria.
DOI: 10.17632/8ysv63ybdw
title: Synergistic effects of denitrifying bacteria and Soil Solidification Rock on the durability of recycled aggregate concrete: resistance to sulfate attack and microscopic mechanisms

description: Compressive strength and mass data from SSR RAC sulfate dry and wet cycle tests, XRD, SEM, and FTIR test results; SEM-EDS test results of RCA before and after mineralization modification by denitrifying bacteria.
DOI: 10.17632/8ysv63ybdw.2
title: Synergistic effects of denitrifying bacteria and Soil Solidification Rock on the durability of recycled aggregate concrete: resistance to sulfate attack and microscopic mechanisms

description: Compressive strength and mass data from SSR RAC sulfate dry and wet cycle tests, XRD, SEM, and FTIR test results; SEM-EDS test results of RCA before and after mineralization modification by denitrifying bacteria.
DOI: 10.17632/y4wfcdnt5c.1
title: Unveiling the Trophic Dynamics and Ecological Roles of Demersal Fish in Hong Kong: A Metabarcoding and Isotope Analysis Approach

description: These datasets contain the sequences obtained from a gut content analysis of 16 demersal fish species in Hong Kong (n=75). It comprises high-quality COI and 12S primers sequencing data, with forward reads labeled as XXX_1.fq and reverse reads as XXX_2.fq. The file names correspond to the species name of each individual fish, as described in the manuscript.
DOI: 10.1594/pangaea.948587
title: Carbonate content and stable isotope from bulk samples of ODP Hole 121-756C
DOI: 10.1594/pangaea.935180
title: Element Log-ratios of IODP Site 353-U1443
DOI: 10.1594/pangaea.948584
title: Semi-quantitative calcareous nannofossils counts from ODP Hole 121-756C
DOI: 10.1594/pangaea.948583
title: Calcareous nannofossils from ODP Hole 121-756C
DOI: 10.1594/pangaea.920564
title: Biostratigraphic datums from DSDP Site 31-296

description: The numerical age estimates follow the Geologic Time Scale 2012 (Gradstein et al. 2012), except for one nannofossil biohorizon (paracme end; Reticulofenestra pseudoumbilicus), which we used the age estimates of Raffi et al. (2006).FO: First occurrence, LO: last occurrence, PB: paracme beginning, PE: paracme end
DOI: 10.1594/pangaea.943660
title: GTS-12 adjusted age models for ODP Site 198-1209

description: GTS-12 timescale adjusted age models for ODP site 1209 with biostratigraphic (calcareous nannoplankton and foraminifer), magnetostratigraphic datums and cyclostratigraphic alignments.
description: Age model by Kast et al., 2019, updated with Westerhold et al., 2018 cyclostratigraphy
DOI: 10.1594/pangaea.935163
title: Element analyses of IODP Site 353-U1443
DOI: 10.1594/pangaea.935179
title: CaCO3 content and accululation rates of IODP Site 353-U1443
DOI: 10.1594/pangaea.935156
title: Benthic foraminifera stable isotope record of IODP Site 353-U1443
DOI: 10.1594/pangaea.943659
title: GTS-12 adjusted age models for ODP Site 184-1146

description: GTS-12 timescale adjusted age models for ODP site 1146 with biostratigraphic (foraminifer) datums.
description: Age model after Nathan and Leckie, 2003, updated to GTS-12.
DOI: 10.1594/pangaea.935128
title: Age model and sedimentation rates of IODP Site 353-U1443
DOI: 10.1594/pangaea.971324
title: Analysis of particulate organic carbon, nitrogen and phosphorus in Antarctic phytoplankton in response to temperature and nitrogen:phosphorus supply interactions

description: Data were obtained from a laboratory growth experiment conducted from April to May 2021 at the Institute for Chemistry and Biology of the Marine Environment (University of Oldenburg). Three Antarctic phytoplankton species (Chaetoceros simplex, Phaeocystis antarctica (single cell culture) and Geminigera cryophila) were grown in monocultures and a mixture of all three species. We used a factorial design including four different N/P treatments (control plus three different N/P levels) and 10 different temperatures (-2, -1, 0, 1, 2, 3, 4, 6, 8 and 10°C). The detailed experimental setup is explained in doi:10.1594/PANGAEA.971329. In order to determine the effect of temperature and nutrient interactions on the stoichiometry of the Antarctic phytoplankton species used in the experiment, 2 x 50 ml from each culture were sampled at the end of the experiment and filtered onto acid washed and pre-combusted glass-fibre filters (GF/C, Whatman, UK). One filter was used for particulate organic carbon (C) and nitrogen (N), the second filter for particulate organic phosphorus (P). After sampling, all filters were stored at -20 °C. Prior to the measurements, the CN filters were dried at 60 °C for seven days, placed in tin capsules, and measured using an HCN elemental analyser (Flash EA 1112; Thermo Scientific, Walthmann, MA, USA). After the P filters were combusted at 450 °C for 4.5 hours, particulate organic phosphorus (POP) was measured photometrically by a molybdate reaction after heat digestion at 90 °C with potassium peroxydisulfate (K₂S₂O₈) solution (Wetzel and Likens, 2000).
description: The experiment started at 2021-04-02T10:00 and ended at 2021-05-19T12:00 .
DOI: 10.1594/pangaea.943655
title: GTS-12 adjusted age models for ODP Site 119-738

description: GTS-12 timescale adjusted age models for ODP site 738 with biostratigraphic (calcareous nannoplankton and foraminifer) and magnetostratigraphic datums.
description: Age model after Hilting 2008, updated to GTS-12.
DOI: 10.1594/pangaea.920566
title: Planktic foraminifera distribution from DSDP Site 31-296

description: Abundance: P=present
DOI: 10.1594/pangaea.920567
title: Strontium isotopic composition from DSDP Site 31-296
DOI: 10.1594/pangaea.911283
title: Length analysis of 50 specimen from Eiffellithus coccolith from sediment core TDP-31

description: The evolution of the calcareous nannofossil E. turriseiffelii - E. eximius lineage in the Turonian from the western tropical Atlantic and Indian Ocean indicates identical eiffellithid forms with morphological change in the rotation of the crossbar, relative to the longitudinal axis, from an "x" (E. turriseiffelii) to a "+" (E. eximius). Within these indistinguishable eiffellithid assemblages, neither the size nor shape show significant change during the morphological transition of the crossbar orientation. The rotation of the crossbar toward an axial alignment results in two shifts in the mean angle values. Prior to the first shift, the mean angles of the eiffellithid assemblage have values between 35o and 45o with no forms with crossbar angles of &lt;20o. The first step occurs at the appearance of specimens with crossbar angles between 20o and 10o marking the first appearance datum (FAD) of E. eximius s. Ver. The second shift is a significant change in the mean angle values from 35-45o to 15-22o among the Eiffellithus assemblage and the appearance of morphotypes with crossbar angles of &lt;10o recognized as E. eximius s.s. The results of this biometric study indicate that two forms can be reliably recognized and used to increase the biostratigraphic resolution, with the FAD of E. eximius s. Verbeek near the middle to upper Turonian boundary and E. eximius s.s. near the lower to middle Turonian boundary.
DOI: 10.1594/pangaea.911284
title: Width analysis of 50 specimen from Eiffellithus coccolith from sediment core TDP-31

description: The evolution of the calcareous nannofossil E. turriseiffelii - E. eximius lineage in the Turonian from the western tropical Atlantic and Indian Ocean indicates identical eiffellithid forms with morphological change in the rotation of the crossbar, relative to the longitudinal axis, from an "x" (E. turriseiffelii) to a "+" (E. eximius). Within these indistinguishable eiffellithid assemblages, neither the size nor shape show significant change during the morphological transition of the crossbar orientation. The rotation of the crossbar toward an axial alignment results in two shifts in the mean angle values. Prior to the first shift, the mean angles of the eiffellithid assemblage have values between 35o and 45o with no forms with crossbar angles of &lt;20o. The first step occurs at the appearance of specimens with crossbar angles between 20o and 10o marking the first appearance datum (FAD) of E. eximius s. Ver. The second shift is a significant change in the mean angle values from 35-45o to 15-22o among the Eiffellithus assemblage and the appearance of morphotypes with crossbar angles of &lt;10o recognized as E. eximius s.s. The results of this biometric study indicate that two forms can be reliably recognized and used to increase the biostratigraphic resolution, with the FAD of E. eximius s. Verbeek near the middle to upper Turonian boundary and E. eximius s.s. near the lower to middle Turonian boundary.
DOI: 10.1594/pangaea.983814
title: Meteorological synoptical observations from station Izaña (2025-06)
DOI: 10.1594/pangaea.920563
title: Stable isotope of Cibicidoides mundulus and Cibicidoides wuellerstorfi from DSDP Site 31-296

description: Correction factors were not applied to the isotopic data from C. mundulus and C. wuellerstorfi.
DOI: 10.1594/pangaea.935181
title: Raw XRF data of IODP Site 353-U1443