cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.g89m0/4
title: brood size

description: # Mean number of larvae from the first 3 broods of females from lines selected for increased thermal tolerance and from lines held as unselected controls. # second column is population name (see sampling locations file). # third column is selection status: S = selected line U = unselected line # N= 6 individuals per line, 3-4 selected and unselected lines per population
DOI: 10.5061/dryad.hn66t/1
title: Data Sheet
DOI: 10.5061/dryad.j5240/2
title: Cmos fasta alignment

description: Alignment of Cmos gene. Sequences are identified as haplotype number (see article text for more details) and GenBank number.
DOI: 10.5061/dryad.kg495/1
title: Fig4_Autum_Predictions

description: Ensemble predictions for Autumn (9-km resolution). File headings: X - longitude, Y - latitude, predP - habitat suitability, predSE - prediction error.
DOI: 10.5061/dryad.kg495/2
title: Fig4_Spring_Predictions

description: Ensemble predictions for Spring (9-km resolution). File headings: X - longitude, Y - latitude, predP - habitat suitability, predSE - prediction error.
DOI: 10.5061/dryad.kg495/3
title: Fig4_Summer_Predictions

description: Ensemble predictions for Summer (9-km resolution). File headings: X - longitude, Y - latitude, predP - habitat suitability, predSE - prediction error.
DOI: 10.5061/dryad.kg495/4
title: Fig4_Winter_Predictions

description: Ensemble predictions for Winter (9-km resolution). File headings: X - longitude, Y - latitude, predP - habitat suitability, predSE - prediction error.
DOI: 10.5061/dryad.kn3d0/10
title: hemi_soc_prdx4_all-hap

description: Sequence alignment of Hemidactylus specimens from Socotra based on unique haplotype sequences of nuclear intron prdx4
DOI: 10.5061/dryad.m0n61/11
title: PRLR

description: PRLR fasta alignment for *BEAST analyses
DOI: 10.5061/dryad.m0n61/3
title: DGL-alpha

description: DGL-alpha fasta alignment for *BEAST analyses
DOI: 10.5061/dryad.mq5ct/2
title: Lal2/SRK alignment for S-domain coding sequence

description: Nexus-formatted alignment of the S-domain coding sequence for SRK and Lal2 sequences included in Figure S3-A. Includes commands used for phylogenetic inference in mrbayes.
DOI: 10.5061/dryad.n630t/2
title: All_NZSA_ALF
DOI: 10.5061/dryad.pj160/1
title: delta4.1.6.5.4.1 Exp

description: csv file, de-identifed
DOI: 10.5061/dryad.q31f8/6
title: IM_CYTB_NWP_WSI

description: IM input file for comparing NW Pacific lineage with White Sea (and Pechora Indiga) populations.
DOI: 10.5061/dryad.q3b41/1
title: DeLeon2014JEB-Feeding-Observation-Data
DOI: 10.5061/dryad.q3b41/2
title: DeLeon2014JEB-Available-Foods-Data
DOI: 10.5061/dryad.qd88b/1
title: eworoRL514BC_QTL

description: Phenotype and genotype data for QTL mapping between strains e, wo, ro and RAL514.
DOI: 10.5061/dryad.qd88b/2
title: stsse_ORER_QTL_map

description: Map information for QTL mapping between strains st, ss, e and oregon R.
DOI: 10.5061/dryad.qd88b/3
title: ssste_ORER_QTL_cross

description: Cross information for QTL mapping between strains st, ss, e and oregon R.
DOI: 10.5061/dryad.rk775/2
title: BirdsNicheData_updated
DOI: 10.5061/dryad.rk775/3
title: BirdsClassificationTrendData

description: Classification and demographic trend data for all study species.
DOI: 10.5061/dryad.rn30d/2
title: standardized and size-corrected fitness and trait data

description: Standardized and size-corrected estimates of fitness and five morphological traits used for measuring selection on two species complexes of Cameroon cichlids: Barombi Mbo Stomatepia and Ejagham Tilapia.
DOI: 10.5061/dryad.rr65n/15
title: Data and phylogenetic tree for the Bayesian analysis of H. erato in region 4 of the red pattern interval

description: Includes region 4 of 5 separate partitions of the red pattern interval based on optimal tree partitioning from the MDL method. Includes the SNPs from Bases 773,021 to 846,050, the Bayes block that went into the analysis, and the resulting Bayesian consensus tree.
DOI: 10.5061/dryad.s6997/1
title: Ovary contig assemblies from RNASeq (transcriptomes)
DOI: 10.5061/dryad.sq633/2
title: MWERF 2004 Saplings

description: See MWERF 2004 Seedlings data for description of headings
DOI: 10.5061/dryad.sq633/3
title: Species List

description: Species codes for the other files
DOI: 10.5061/dryad.v1908/10
title: Vertebrate Data - Final

description: Vertebrate data on sexual system and chromosome numbers, based on published literature (19 May 2014 freeze).
DOI: 10.5061/dryad.v843v/1
title: Data from Benson & Druckenmiller (2013)

description: Phylogenetic data matrix, R Code for implementing disaprity estimates, and associated documentation.
DOI: 10.5061/dryad.08m6t/2
title: Pairwise_Fst
DOI: 10.5061/dryad.08m6t/3
title: LCTA_v1-2
DOI: 10.5061/dryad.0s96k/2
title: Data1_Matlab

description: Part 1 of sample data for the Matlab codes
DOI: 10.5061/dryad.1qp42/10
title: Control MNase-seq data aligned to Haloferax genome (BAM file PART2)

description: naked DNA control (MNase-seq)
DOI: 10.5061/dryad.25131/6
title: modeComparison_propDur_workspace_09-16-12

description: An R workspace file containing all simulation data needed for plotting the figures where multiple models of differentiation are compared (Fig. 3-6, 8). Can be read into R with function load().
DOI: 10.5061/dryad.2637g/2
title: auklet measurements

description: measurements of extant auklet skeletons
DOI: 10.5061/dryad.2637g/3
title: character descriptions

description: descriptions and illustrations of morphological characters used in the phylogenetic analysis
DOI: 10.5061/dryad.2pj70/1
title: Bourret_genotypes

description: Genotype table for 640 individuals and 3118 snp markers retained in final analyses.
DOI: 10.5061/dryad.2pj70/3
title: Bourret_geological_data_details

description: Table of geological data
DOI: 10.5061/dryad.2pm42/1
title: Study localities list. Table S1

description: Location, defaunation status and mean (±SD) diameter (mm) of Euterpe edulis (Arecaceae) seeds sampled in the Atlantic forest in Brazil. N, sample size. Marked with * are sites where focal observations were conducted.
DOI: 10.5061/dryad.2pm42/2
title: SM_Table_S2

description: Occurrence of all known frugivore species that feed on Euterpe edulis fruits in the 22 palm populations sampled. [Spreadsheet document]
DOI: 10.5061/dryad.2pm42/3
title: SM_Table_S4

description: Summary of visitation data and fruit feeding behavior for frugivorous birds that feed on Euterpe edulis fruits in defaunated and non-defaunated Atlantic forests in Brazil. The data include information for each species from focal observations in different areas of the defaunated and non-defaunated sites, totaling 2326 h of observation. Small, small-gape (≤ 12 mm) frugivores; Large, large-gape (&gt; 12 mm) frugivores.
DOI: 10.5061/dryad.2vm20/1
title: Multi-scale model of CRISPR-induced host-viral co-evolution

description: This code presents a flexible framework for considering the co-evolutionary dynamics of hosts and viruses which interact via a CRISPR immune mechanism. The code is written in Matlab. Instructions on how to utilize the code including an example file are found in the README file.
DOI: 10.5061/dryad.453f3/1
title: Sanger sequencing fasta file from free-living bacterial communities associated with Ridgeia piscesae - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Near-complete SSU rRNA gene sequences obtained from particulate detritus associated with Ridgeia piscesae in hydrothermal habitats contrasted by flow regime. This data was obtained from Sanger sequencing.
DOI: 10.5061/dryad.453f3/2
title: Pyrosequencing fasta file from free-living bacteria associated with Ridgeia piscesae - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Partial SSU rRNA gene sequences obtained from particulate detritus associated with Ridgeia piscesae in hydrothermal habitats contrasted by flow regime. This data was obtained from pyrosequencing.
DOI: 10.5061/dryad.453f3/3
title: Group file for the pyrosequencing fasta file - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Group file required in order to perform analysis on the pyrosequencing fasta file. This file was obtained from the software mothur.
DOI: 10.5061/dryad.4gk80/1
title: Sanger sequencing fasta file from bacterial communities associated with the trophosome of Ridgeia piscesae - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Near-complete SSU rRNA gene sequences obtained from the trophosome Ridgeia piscesae in hydrothermal habitats contrasted by flow regime. This data was obtained from Sanger sequencing.
DOI: 10.5061/dryad.4gk80/2
title: Group file for the pyrosequencing fasta file - A Canadian Healthy Oceans Network Population Connectivity project, PC-11

description: Group file required in order to perform analysis on the pyrosequencing fasta file. This file was obtained from the software mothur.
DOI: 10.5061/dryad.4rj2s/10
title: Alignment_Ommastrephidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/11
title: Alignment_Sternoptychidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/12
title: Alignment_Synaphobranchidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/13
title: Alignment_Trichiuridae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.4rj2s/14
title: NJTree_Carangidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/15
title: NJTree_Exocoetidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/16
title: NJTree_Halosauridae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/17
title: NJTree_Histioteuthidae

description: Tree file constructed in Mega 6
DOI: 10.5061/dryad.4rj2s/9
title: Alignment_Myctophidae

description: File containing alignment run in Clustal W
DOI: 10.5061/dryad.590j0/2
title: File 1-Muscle-aligned cadmodulin genes of Aspergillus terreus

description: Multiple sequence alignment of partial sequences of Cadmodulin gene of Aspergillus terreus. The sequences were aligned using Muscle software in MEGA 6.01 using default settings.
DOI: 10.5061/dryad.601fk/2
title: Caputo et al_MEC_2014

description: Data derived from population genetics study "Caputo et al_MEC_2014" (microsatellite and inversion polymorphism) of the An.coluzzii and Anopheles gambiae s.s. along the Gambia river. Samples were collected  in The Gambia and Eastern Senegal during 2006 rainy season.
DOI: 10.5061/dryad.6347b/2
title: phenology

description: #File 2 - Phenology data on S. punctum, Zurich population.#Flies were censused every week, except during mid-season, from beginning of Mars to end of October.#10 traps set out on every occasion (given as calender date = "Date", or julian date = "Julian"). #Fly counts per trap averaged to give one estimate per date ("meanFlies").
DOI: 10.5061/dryad.69mk7/2
title: samples

description: Text file of amino acid sequences from HIV-1 V3. Sequences are organised by the patient from which they were sampled. Preceding the set of samples from each patient is the number of sequence samples for the patient and then the year (e.g. 1988 is "88") and the number of sequences for each sample. This is followed by the sequences in FastA format; sequences are labelled with the patient number and the year of the sample.
DOI: 10.5061/dryad.6kp2j/1
title: IBM for two populations of UK Serotine bats

description: Female-only Individual-Based Model for two populations of Serotine bats in the UK: Hollingbury (H) and Crundale (C). Demographic rates were estimated using capture-mark-recapture.
DOI: 10.5061/dryad.6kp2j/2
title: Files for CMR analysis using POPAN model

description: This folder contains the raw capture records for the Crundale and Hollingbury Serotine bats population (females only); they are formatted to be read in MARK and RMark (in R) and modelled using a POPAN approach. In addition, the folder also contains the R scripts for analysing the two datasets in R using the RMark package.
DOI: 10.5061/dryad.6kp2j/3
title: Files for CMR analysis with CJS model- Hollingbury only

description: This folder contains the raw capture record for the Hollingbury Serotine bats population (females only), formatted to be read in MARK or RMark (in R) and modelled using a CJS approach. In addition, the folder also contains the MARK files for the CJS models that were run.
DOI: 10.5061/dryad.6kp2j/4
title: Files for CMR analysis with CJS model- Crundale only

description: This folder contains the raw capture record for the Crundale Serotine bats population (females only), formatted to be read in MARK or RMark (in R) and modelled using a CJS approach. In addition, the folder also contains the MARK files for the CJS models that were run.
DOI: 10.5061/dryad.7137r/2
title: bird1363_pair1_son1_all_songs
DOI: 10.5061/dryad.7137r/3
title: bird1362_pair1_son2_all_songs
DOI: 10.5061/dryad.7fn18/3
title: Microsatellite genotypes

description: Multilocus microsatellite genotypes. Allele codes indicate fragment length (bp). data flie formated as 1 allele per column, 2 alleles per locus. Transect, site and individual number all provided.
DOI: 10.5061/dryad.7fn18/4
title: Estimates of habitat variables at each site

description: Field measurements of the local habitat at each sample site.
DOI: 10.5061/dryad.7hq27/1
title: ALL_NESTS
DOI: 10.5061/dryad.7hq27/3
title: YOUNGER_2011
DOI: 10.5061/dryad.7hq27/4
title: FEMALES
DOI: 10.5061/dryad.7m6kg/14
title: Bioturbation in Nectocaris pteryx from the Burgess Shale

description: ROM 60117, Burgess Shale specimen with minimal burrowing, infill of axial cavity undisturbed
DOI: 10.5061/dryad.7m6kg/19
title: Fig. 4a: ROM 59658 – Nectocaris pteryx from the Burgess Shale

description: Counterpart, crossed polars
DOI: 10.5061/dryad.7m6kg/20
title: Fig. 4a: ROM 59658 – Nectocaris pteryx from the Burgess Shale

description: Counterpart, direct illumination
DOI: 10.5061/dryad.7m6kg/36
title: Fig. 5c: ROM 59661 — Nectocaris pteryx (lateral view) from the Burgess Shale

description: Counterpart
DOI: 10.5061/dryad.7m6kg/38
title: Fig. 6b: ROM 60146 – Nectocaris pteryx (head) from the Burgess Shale

description: Specimen with well-preserved soft tissue has smooth, unornamented tentacle margins; interference image under plane and crossed polars.
DOI: 10.5061/dryad.7sn1m/1
title: Thaumetopoea pinivora microsatellite Europe input file
DOI: 10.5061/dryad.82h0m/1
title: squam_shl

description: Maximum-likelihood phylogeny containing 4162 species.
DOI: 10.5061/dryad.86187/1
title: Scleractinian Coloniality and Photosymbiosis

description: Table showing the presence or absence of coloniality and photosymbiosis for coral species. This data was compiled largely from Veron 2002.
DOI: 10.5061/dryad.8sb5h/8
title: McMorran Figure S5
DOI: 10.5061/dryad.9c568/4
title: Flu H1 alignment
DOI: 10.5061/dryad.b191j/1
title: Data file

description: Data on song rate as a function of treatments
DOI: 10.5061/dryad.b52p5/1
title: switchgrass_exome_capture_snp_matrix.tar

description: SNP Matrix and allele count data for Panicum virgatum exome capture experiment.
DOI: 10.5061/dryad.bv24t/3
title: Longitude data

description: This file contains longitude data for each Turtle Dove tagged with a geolocator. A separate sheet is provided for each bird.
DOI: 10.5061/dryad.c0164/1
title: female reinf learn loop program

description: Program for section in the paper titled "Female learning model: Learning increases bias towards conspecifics and against heterospecifics"
DOI: 10.5061/dryad.dp094/1
title: PLOS ONE total data

description: Excel file with all data from "Comparison and Optimization of hiPSC Forebrain Cortical Differentiation Protocols".
DOI: 10.5061/dryad.fj594/1
title: snp_table_anomalus

description: List of SNPs for H.anomalus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual
DOI: 10.5061/dryad.fj594/6
title: snp_table_paradoxus

description: List of SNPs for H.paradoxus. Column 1 refers to the reference sequence. Column 2 to the position were the SNP is located. Column 3 and after are the genotypes per individual
DOI: 10.5061/dryad.g216n/3
title: GPS coordinates of Lissotriton montandoni localities used for species distribution modeling
DOI: 10.5061/dryad.h658g/2
title: Kirk_sampling_information

description: Sampling information, including location, sample size, name of supplier, host plant, sample life-stage, and latitude and longitude data.
DOI: 10.5061/dryad.jm8vp/2
title: STable 2

description: Phenotype variation model - females underestimate male quality by up to 20%
DOI: 10.5061/dryad.js5d3/1
title: Individual relocation data for the 20 species of helicoid land snails
DOI: 10.5061/dryad.js5d3/2
title: Species- and Individual-level traits for the 20 species of helicoid land snails
DOI: 10.5061/dryad.k018j/1
title: Crayfish growth and mortality data

description: These are the data underlying the main crayfish growth mortality and findings in the manuscript
DOI: 10.5061/dryad.n630t/3
title: AUSTRALIA_ALLELEFREQ
DOI: 10.5061/dryad.p7639/4
title: DeerGeneticData

description: Genepop file for use with adegenet code.
DOI: 10.5061/dryad.rr65n/16
title: Data and phylogenetic tree for the Bayesian analysis of H. erato in region 5 of the red pattern interval

description: Includes region 5 of 5 separate partitions of the red pattern interval based on optimal tree partitioning from the MDL method. Includes the SNPs from Bases 846,050 to 945,009, the Bayes block that went into the analysis, and the resulting Bayesian consensus tree.
DOI: 10.5061/dryad.rr65n/17
title: Bayesian phylogeny of sequence unlinked to color pattern in H. erato

description: "Color pattern unlinked" Bayesian phylogenetic tree of H. erato derived from SNPs from the 3 color pattern unlinked regions combined (cinnabar BAC, BAC 46F09, BAC 48A16) and excluding sites with &gt;20% missing data. Also includes Bayes block and the resulting Bayesian consensus tree. The file is in nexus format.
DOI: 10.5061/dryad.s1092/3
title: Remate.sim

description: Sperm numbers in space and time after second mating for D. simulans. Variables: MinASM – time after the start of mating at which female was frozen; FirstM – transgenic line of first male by sperm label, GFP or RFP. Second male is automatically the reciprocal label; Remate – day after first mating (day 0) on which female remated; Cop1 – duration in minutes of the first copulation; Cop2 – duration in minutes of the second copulation; PriorProg – number of progeny produced by female before remating; Bursa1 – number of first-male sperm in the bursa; Bursa2 – number of second-male sperm in the bursa; Prox1 – number of first-male sperm in the proximal half of the SR; Prox2 – number of second-male sperm in the proximal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist1 – number of first-male sperm in the distal half of the SR; Dist2 – number of second-male sperm in the distal half of the SR; Caps1 – number of first-male sperm in the two spermathecal caps combined; Caps2 – number of second-male sperm in the two spermathecal caps combined; Ducts1 – number of first-male sperm in the two spermathecal ducts combined; Ducts2 – number of second-male sperm in the two spermathecal ducts combined
DOI: 10.5061/dryad.060d2/1
title: File S1 Pseudoreference part 1

description: Pseudoreference of concatenated unique RAD-seq clusters, separated by a stretch offive Ns, pseudochromosomes 1–6. Zip-compressed fasta file format.
DOI: 10.5061/dryad.060d2/2
title: File S2 Pseudoreference part 2

description: Pseudoreference of concatenated unique RAD-seq clusters, separated by a stretch offive Ns, pseudochromosomes 7–12. Zip-compressed fasta file format.
DOI: 10.5061/dryad.060d2/3
title: Table S5 RAD sequencing data set

description: RAD sequencing data set for 96 individuals from 10 populations of R. capensisfrom the Cape Floristic Region of South Africa.
DOI: 10.5061/dryad.08m6t/5
title: Explanatory_variables_mh_Agriculture_sf_15
DOI: 10.5061/dryad.0mg7h/2
title: Table Genotypes LG2 familles11 dryad

description: Table of genotypes from 10 full pedigrees, including parents, sexed juveniles, and tadpoles. Genotypes include 10 polymorphic microsatellite markers. Genotypes were obtained with an ABI3000 Prism sequencer.
DOI: 10.5061/dryad.20r9k/13
title: ailuropoda_reads.txt

description: Reads used to assemble the Panda ORs
DOI: 10.5061/dryad.2320n/1
title: Emergence

description: Data on emergence success collected from the lab. Emergence success is coded 0=Fail, 1=Success. The content of the file is well described in the methodology section of the associated paper.
DOI: 10.5061/dryad.2320n/2
title: Lifespan and Development

description: Data on Lifespan and Development time, both are measured in days. Sex is coded F=Female and M=Male.
DOI: 10.5061/dryad.2cf56/1
title: Experimental test of color and pattern

description: Information about and results from the experimental test of color and pattern. The file include the 886 experimental trials included in the final analysis of the six artificial prey. Individual is hen individual and treatment describe the type of artificial prey design.
DOI: 10.5061/dryad.2hv53/1
title: ND2 alignment

description: ND2 data
DOI: 10.5061/dryad.2hv53/3
title: PRL-R alignment

description: PRL-R alignment
DOI: 10.5061/dryad.32875/1
title: Brief Access Lick Data

description: This files provides brief-access lick data for sucrose and nicotine solution as a function of maternal alcohol exposure, weight of the animal at the time of testing and sex of the animal.  The different sheets provide the mean lick data for each concentration as well as the mean latency to first lick at each concentration of tasting.
DOI: 10.5061/dryad.32875/2
title: Sniffing Behavior Data

description: The data represent the deconstruction of the sniffing patterns of adolescent rats into 14 response variables in response to nicotine odor at different concentrations of odorant.  The animals in the study received either prenatal alcohol or control exposure.
DOI: 10.5061/dryad.3b3h8/1
title: Measurements_2012_paper_summary
DOI: 10.5061/dryad.3b95n/1
title: Molecular phylogenetic data sets and analysis results

description: Bayesian and maximum likelihood data sets, analyses and results file.
DOI: 10.5061/dryad.3b95n/2
title: Morphological phylogenetic data sets and analysis results

description: Morphological data set with tree and consensus tree files for equal and implied weight analysis.
DOI: 10.5061/dryad.3b95n/3
title: Aptostichus locality data
DOI: 10.5061/dryad.3b95n/4
title: Taxonomy Python Scripts

description: Python scripts (2) to assist in writing material examined sections and species descriptions
DOI: 10.5061/dryad.3b95n/5
title: Specimen measurement data
DOI: 10.5061/dryad.3g615/3
title: SupportingInformationS3

description: S3. Rooted maximum parsimony tree of C. burnetii MST genotypes (1-34 and Dugway) after Hornstra et al. (Hornstra, Priestley, et al. 2011). Whole genome sequences are mapped onto the tree and the major genomic groups of C. burnetii are identified.
DOI: 10.5061/dryad.3qv3p/1
title: Insect ontogenetic respiration

description: This data set includes respiration measurements on 50 insects across various stages of ontogenetic development (embryonic, immature, and pupal respiration). The data were compiled from the literature with references and comments given in the  document.
DOI: 10.5061/dryad.4d236/1
title: Growth data

description: Proportion of the total metabolic power devoted to growth (Eg) and the overall integration magnitude (ICV) calculated for each mammal family, as well as the original neonate and adult body mass measurements used in the calculation of Eg. Sources for the body mass data can be obtained from the text of the manuscript.