cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3701953_d4.v1
title: Additional file 5: of Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

description: Top members of the bacterial microbiome of each plant compartment. Values represent average number of reads (±standard error) and relative read abundances (%) based on 15 biological replicates (rhizosphere soil and root samples) and 11 replicates (stem and leaf samples) after normalization to 2000 sequences. Normal distributions of the data were checked with the Shapiro–Wilk test, and homoscedasticity of variances was analyzed using either Bartlett’s or the Fligner–Killeens test. The ANOVA model was [OTU] ~ compartment and included all four plant compartments followed by Tukey’s honest significant differences post hoc tests. Plant compartment effects show the overall ANOVA results: F(DFn, DFd) and P value. Significant differences at the 95% confidence interval (P
DOI: 10.6084/m9.figshare.c.3701953_d4
title: Additional file 5: of Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees

description: Top members of the bacterial microbiome of each plant compartment. Values represent average number of reads (±standard error) and relative read abundances (%) based on 15 biological replicates (rhizosphere soil and root samples) and 11 replicates (stem and leaf samples) after normalization to 2000 sequences. Normal distributions of the data were checked with the Shapiro–Wilk test, and homoscedasticity of variances was analyzed using either Bartlett’s or the Fligner–Killeens test. The ANOVA model was [OTU] ~ compartment and included all four plant compartments followed by Tukey’s honest significant differences post hoc tests. Plant compartment effects show the overall ANOVA results: F(DFn, DFd) and P value. Significant differences at the 95% confidence interval (P
DOI: 10.15468/dl.ecrpr4
title: Occurrence Download

description: A dataset containing 797 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Clematis intricata Bunge"
 ]
}

 The dataset includes 797 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038342-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3701956_d7
title: Additional file 2: Table S1. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: Differentially methylated sites in ME/CFS. Sites that were significantly differentially methylated between ME/CFS and controls (FDR ≤ 0.05, Beta-difference ≥ 5% ). (XLSX 1.58 mb)
DOI: 10.15468/dl.3vrseh
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus calamus (Valenciennes, 1830)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 142 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038343-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3701968_d5
title: Additional file 3: of ITIH5 mediates epigenetic reprogramming of breast cancer cells

description: CpG sites with potential H3 marks. This table lists CpG sites of the HumanMethylation450 BeadChip annotated with histone H3 modifications (H3K4Me3 and H3K27Me3). (XLSX 7866Â kb)
DOI: 10.6084/m9.figshare.c.3701968_d5.v1
title: Additional file 3: of ITIH5 mediates epigenetic reprogramming of breast cancer cells

description: CpG sites with potential H3 marks. This table lists CpG sites of the HumanMethylation450 BeadChip annotated with histone H3 modifications (H3K4Me3 and H3K27Me3). (XLSX 7866Â kb)
DOI: 10.6084/m9.figshare.c.3701980_d2.v1
title: MOESM6 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 6 R-Markdown file including script and results of MeSH and GO analysis on a random set of 1500 maize genes.
DOI: 10.6084/m9.figshare.c.3701980_d2
title: MOESM6 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 6 R-Markdown file including script and results of MeSH and GO analysis on a random set of 1500 maize genes.
DOI: 10.6084/m9.figshare.c.3701962_d7.v1
title: Additional file 6: Table S5. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Gene annotation according to the polymorphism detected in the analysis. (XLSX 4054 kb)
DOI: 10.6084/m9.figshare.c.3701956_d8
title: Additional file 10: Table S7. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: Epigenomic regions that are significantly related to quality of life. Genes and associated regions that showed significant associations between RAND-36 overall quality of life and DNA methylation (FDR ≤ 0.05). (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3701956_d8.v1
title: Additional file 10: Table S7. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: Epigenomic regions that are significantly related to quality of life. Genes and associated regions that showed significant associations between RAND-36 overall quality of life and DNA methylation (FDR ≤ 0.05). (XLSX 168 kb)
DOI: 10.6084/m9.figshare.c.3701962_d7
title: Additional file 6: Table S5. of Landscape of genomic diversity and host adaptation in Fusarium graminearum

description: Gene annotation according to the polymorphism detected in the analysis. (XLSX 4054 kb)
DOI: 10.6084/m9.figshare.c.3701980_d3.v1
title: MOESM3 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 3 R-Markdown file including script and results of MeSH and GO analysis on maize genes under selection for an increase in maize seed size.
DOI: 10.6084/m9.figshare.c.3701977_d3.v1
title: Additional file 3: of Exploratory bioinformatics investigation reveals importance of â  junkâ   DNA in early embryo development

description: Linux commands and shell scripts used to analyze short reads to quantify the expression of regular genes and transposons. (TXT 70 kb)
DOI: 10.6084/m9.figshare.c.3701977_d3
title: Additional file 3: of Exploratory bioinformatics investigation reveals importance of â  junkâ   DNA in early embryo development

description: Linux commands and shell scripts used to analyze short reads to quantify the expression of regular genes and transposons. (TXT 70 kb)
DOI: 10.6084/m9.figshare.c.3701980_d3
title: MOESM3 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 3 R-Markdown file including script and results of MeSH and GO analysis on maize genes under selection for an increase in maize seed size.
DOI: 10.6084/m9.figshare.c.3701980_d4.v1
title: MOESM7 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 7 R-Markdown file including script and results of MeSH semantic similarity analysis.
DOI: 10.6084/m9.figshare.c.3701956_d9.v1
title: Additional file 4: Table S2. of Epigenetic modifications and glucocorticoid sensitivity in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome (ME/CFS)

description: High confidence differentially methylated sites according to Dexamethasone assay subgroups. Differentially methylated sites between the 3 different subgroups (ME/CFS GC-Hypersensitive, ME/CFS GC-Typical, and Healthy Controls) from the Dexamethasone assay (p ≤0.05, Beta-difference ≥ 5%, after 10 000 permutations). (XLSX 2.88 mb)
DOI: 10.6084/m9.figshare.c.3701980_d4
title: MOESM7 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 7 R-Markdown file including script and results of MeSH semantic similarity analysis.
DOI: 10.6084/m9.figshare.c.3701968_d8
title: Additional file 6: of ITIH5 mediates epigenetic reprogramming of breast cancer cells

description: Primer sequences and PCR conditions for MSP analyses. This table illustrates the sequences of all primers used in this study for MSP analysis. (XLSX 10Â kb)
DOI: 10.6084/m9.figshare.c.3701980_d7.v1
title: MOESM5 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 5 R-Markdown file including script and results of MeSH and GO analysis on maize genes implicated in a GWAS study of maize inflorescence traits.
DOI: 10.6084/m9.figshare.c.3701986_d3
title: MOESM3 of Integrating enzyme fermentation in lignocellulosic ethanol production: life-cycle assessment and techno-economic analysis

description: Additional file 3. Aspen Process Economic Analyzer data for the equipment cost and the total direct cost (in SEK). The quoted items (e.g. steam pretreatment unit) are not included in the list, as we do not have permission to present the quoted prices in details.
DOI: 10.6084/m9.figshare.c.3701986_d3.v1
title: MOESM3 of Integrating enzyme fermentation in lignocellulosic ethanol production: life-cycle assessment and techno-economic analysis

description: Additional file 3. Aspen Process Economic Analyzer data for the equipment cost and the total direct cost (in SEK). The quoted items (e.g. steam pretreatment unit) are not included in the list, as we do not have permission to present the quoted prices in details.
DOI: 10.6084/m9.figshare.c.3701995_d2.v1
title: Additional file 2 of Meta-aligner: long-read alignment based on genome statistics

description: PE algorithm simulations. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3701980_d7
title: MOESM5 of Medical Subject Heading (MeSH) annotations illuminate maize genetics and evolution

description: Additional file 5 R-Markdown file including script and results of MeSH and GO analysis on maize genes implicated in a GWAS study of maize inflorescence traits.
DOI: 10.6084/m9.figshare.c.3701995_d2
title: Additional file 2 of Meta-aligner: long-read alignment based on genome statistics

description: PE algorithm simulations. (XLSX 66 kb)
DOI: 10.15468/dl.zudaaf
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus nodosus Randall & Caldwell, 1966",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038344-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3703300_d3.v1
title: Additional file 4: of Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency

description: The RIF1 and RIF2 output listed in full for the 898 Transcription Factors. (XLSX 69Â kb)
DOI: 10.6084/m9.figshare.c.3703300_d3
title: Additional file 4: of Progesterone signalling in broiler skeletal muscle is associated with divergent feed efficiency

description: The RIF1 and RIF2 output listed in full for the 898 Transcription Factors. (XLSX 69Â kb)
DOI: 10.6084/m9.figshare.c.3710458_d3.v1
title: MOESM12 of Passive case detection of malaria in Ratanakiri Province (Cambodia) to detect villages at higher risk for malaria

description: Additional file 12. Raw data file. This file contains all raw data used for all analyses in this study.
DOI: 10.6084/m9.figshare.c.3710458_d3
title: MOESM12 of Passive case detection of malaria in Ratanakiri Province (Cambodia) to detect villages at higher risk for malaria

description: Additional file 12. Raw data file. This file contains all raw data used for all analyses in this study.
DOI: 10.15468/dl.tfd4qr
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus penna (Valenciennes, 1830)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 48 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038345-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3gabw
title: Occurrence Download

description: A dataset containing 3082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is South America",
 "Country is Chile",
 "Geometry POLYGON((-72.2706 -18.58525,-78.10599 -48.68608,-73.56015 -54.8616,-67.48607 -53.31284,-71.54539 -49.45601,-66.03376 -23.32426,-69.07966 -17.34354,-72.2706 -18.58525))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Absent",
 "Year 2000-2023"
 ]
}

 The dataset includes 3082 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038346-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3704446_d5.v1
title: Additional file 5: Database 1. of GIS-supported epidemiological analysis on canine Angiostrongylus vasorum and Crenosoma vulpis infections in Germany

description: The data supporting the findings of present study. (CSV 2996 kb)
DOI: 10.6084/m9.figshare.c.3704446_d5
title: Additional file 5: Database 1. of GIS-supported epidemiological analysis on canine Angiostrongylus vasorum and Crenosoma vulpis infections in Germany

description: The data supporting the findings of present study. (CSV 2996 kb)
DOI: 10.6084/m9.figshare.c.3704467_d1
title: Additional file 6: of The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases

description: Table of CGIs. 6.1 CpG islands and other genomic features in Echinococcus species genomes. 6.2 Summary of correlations between CGI density and genome features in the three Echinococcus species; 6.3-6.8 Differential CGIs distribution upstream Echinococcus genes (presence/absent in Echinococcus genomes). (XLS 204 kb)
DOI: 10.15468/dl.tuucxq
title: Occurrence Download

description: A dataset containing 57 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus pennatula Guichenot, 1868",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 57 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038347-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14511248
title: data for "PIC simulation on mode conversion of Saturn's 20 kHz narrowband radio emission"

description: The file "animations.pptx" shows the animations of the resulting figures in the article. "2Dfields data.zip" can be used to obtain the results of the two-dimensional field components shown in Figure 3 in the paper. "kxkz data.zip" can get the Fourier analysis shown in Figure 4 of the paper. "kw data.zip" can get the Dispersion analysis of the 6 field components in Figure 5 of the paper; "field energy for uniform region.zip" and "field energy for entire domain.zip" can obtain the Relative energy variations as shown in Figure 6 of the paper.
DOI: 10.5281/zenodo.14511249
title: data for "PIC simulation on mode conversion of Saturn's 20 kHz narrowband radio emission"

description: The file "animations.pptx" shows the animations of the resulting figures in the article. "2Dfields data.zip" can be used to obtain the results of the two-dimensional field components shown in Figure 3 in the paper. "kxkz data.zip" can get the Fourier analysis shown in Figure 4 of the paper. "kw data.zip" can get the Dispersion analysis of the 6 field components in Figure 5 of the paper; "field energy for uniform region.zip" and "field energy for entire domain.zip" can obtain the Relative energy variations as shown in Figure 6 of the paper.
DOI: 10.6084/m9.figshare.c.3704470_d6.v1
title: Additional file 1: Table S1. of Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors

description: Taxa analyzed and sources of sequence data. Table S2. MosquitoSlim categories, GO term counts and source of GO terms. Table S3. GO terms included in MosquitoSlim. Table S4. GO terms that did not map to MosquitoSlim. Table S5. GO terms and the frequency with which they were associated with protein families gained, lost, and enriched. Table S6. InterPro IDs of gained protein families. Table S7. InterPro2GO mapping of gained InterPro families. Table S8. KEGG mapping of gained protein families. Table S9. Comparison with the results of Neafsey et al. [7]. (XLSX 128Â kb)
DOI: 10.6084/m9.figshare.c.3704470_d6
title: Additional file 1: Table S1. of Genome content analysis yields new insights into the relationship between the human malaria parasite Plasmodium falciparum and its anopheline vectors

description: Taxa analyzed and sources of sequence data. Table S2. MosquitoSlim categories, GO term counts and source of GO terms. Table S3. GO terms included in MosquitoSlim. Table S4. GO terms that did not map to MosquitoSlim. Table S5. GO terms and the frequency with which they were associated with protein families gained, lost, and enriched. Table S6. InterPro IDs of gained protein families. Table S7. InterPro2GO mapping of gained InterPro families. Table S8. KEGG mapping of gained protein families. Table S9. Comparison with the results of Neafsey et al. [7]. (XLSX 128Â kb)
DOI: 10.6084/m9.figshare.c.3704494_d4
title: Additional file 4: of Expression of enhancer of zeste homolog 2 correlates with survival outcome in patients with metastatic breast cancer: exploratory study using primary and paired metastatic lesions

description: Dataset of this study. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3704467_d8
title: Additional file 3: of The Echinococcus canadensis (G7) genome: a key knowledge of parasitic platyhelminth human diseases

description: Table of metabolic pathways and associated SNPs. 3.1 E. canadensis (G7) KO; 3.2 E. canadensis pathways; 3.3 Complete pathways modules; 3.4 Number of Homozygous and heterozygous variant sites of E. canadensis (G7), E. multilocularis and E. granulosus (G1).3.5 Gene distribution in KEGG pathways; 3.6 SNPs density in KEGG pathways. 3.7 List of genes subject of experimental validation in SNPs analyses; 3.8 Table of primers for SNP validation. (XLSX 699 kb)
DOI: 10.15468/dl.8apgzp
title: Occurrence Download

description: A dataset containing 41 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calamus proridens Jordan & Gilbert, 1884",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 41 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038348-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26965054
title: GHG emissions from alpine streams in SW China

description: Supplementary Dataset for the manuscript entitled "Diverse Altitudinal Patterns and Drivers of Greenhouse Gas Dynamics in Southwest China Alpine Streams and Rivers "
DOI: 10.6084/m9.figshare.26965054.v1
title: GHG emissions from alpine streams in SW China.csv

description: collected GHG evasions from alpine streams in SW China
DOI: 10.15468/dl.cgz473
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bombus montivagus Smith, 1878"
 ]
}

 The dataset includes 139 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038349-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3704566_d3.v1
title: Additional file 9 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Ensemble 16. This ZIP file includes all of the parameter vectors in Ensemble 16. (ZIP 9760 kb)
DOI: 10.6084/m9.figshare.c.3704566_d3
title: Additional file 9 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Ensemble 16. This ZIP file includes all of the parameter vectors in Ensemble 16. (ZIP 9760 kb)
DOI: 10.6084/m9.figshare.c.3704566_d5.v1
title: Additional file 4 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Simulation code. This ZIP file includes a Matlab script (getpredictionrange.m), a C subroutine (for solving the ODEs), and additional files that simulate the model with different ensembles (by the execution of getpredictionrange.m) to compute the prediction range and protein abundances for all mutant strains in the Prediction Set for a given ensemble (ensembles included as additional ZIP files and getpredictionrange.m currently set to load and use Ensemble 1 for the computations). (ZIP 18.7 kb)
DOI: 10.6084/m9.figshare.c.3704566_d5
title: Additional file 4 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Simulation code. This ZIP file includes a Matlab script (getpredictionrange.m), a C subroutine (for solving the ODEs), and additional files that simulate the model with different ensembles (by the execution of getpredictionrange.m) to compute the prediction range and protein abundances for all mutant strains in the Prediction Set for a given ensemble (ensembles included as additional ZIP files and getpredictionrange.m currently set to load and use Ensemble 1 for the computations). (ZIP 18.7 kb)
DOI: 10.6084/m9.figshare.c.3704566_d6.v1
title: Additional file 6 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Ensembles 2 through 9. This ZIP file includes all of the parameter vectors in Ensembles 2 through 9. (ZIP 12100 kb)
DOI: 10.6084/m9.figshare.c.3704566_d6
title: Additional file 6 of Predicting network modules of cell cycle regulators using relative protein abundance statistics

description: Ensembles 2 through 9. This ZIP file includes all of the parameter vectors in Ensembles 2 through 9. (ZIP 12100 kb)
DOI: 10.15468/dl.n5j6mm
title: Occurrence Download

description: A dataset containing 62 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Callanthias ruber (Rafinesque, 1810)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 62 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0038350-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.