cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26008/1912/bco-dmo.907383.1
title: Abalone recruitment data from Baja California and Baja California Sur, Mexico in 2019

description: Abalone support commercial and recreational fishery, however their population have decline dramatically since 1950's. To understand the recruitment of abalone populations, standarized abalone recruitment modules made of half cinder blocks inside cages were deployed in Baja California and Baja California Sur, Mexico. 12 cages were deployed at three sites (i.e., El Rosario, Isla Natividad and La Bocana) in Mexico. The abundances of abalone and invertebrates found in the cages were checked after 12months. This dataset presents all the information collected from the cages deployed at three sites (El Rosario, Isla Natividad and La Bocana) in Baja California and Baja California Sur, Mexico.
DOI: 10.26008/1912/bco-dmo.906858.1
title: N:P ratio experiment physiology and carbonate chemistry laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022

description: These raw data contain physiological data collected from laboratory experiments with Pseudo-nitzschia australis.  This dataset includes replicate data for N:P ratio experiment physiology and carbonate chemistry. 

In this 3x2 matrix experiment, we compared each N:P ratio (5, 10, and 50), temperature (13 and 19°C), and total nutrient concentration (high and low) at every combination.

See &quot;Related Datasets&quot; for other physiological measurements published as part of these experiments. See the results publication Kelley et al. (2003) for more detail.  The following description provides details for all related physiological measurement datasets.

These physiological measurements include: growth rates, domoic acid quotas, domoic acid production rates, net primary productivity, and nitrogen use efficiencies. Also included are pH and DIC measurement used to characterize the carbonate system. 

These data revealed novel insights into P. australis bloom dynamics and may be useful to harmful algal bloom modelers and were collected and analyzed by Kyla Kelly, Amjad Mansour, Chen Liang, Andrew Kim, Lily Mancini, Dr. Matthew Bertin, Dr. Bethany Jenkins, Dr. David Hutchins, and Dr. Fei-Xue Fu.
DOI: 10.26008/1912/bco-dmo.907321.1
title: Ecological monitoring of algae on Isla Natividad from 2006 to 2021

description: This dataset encompasses information about algae transects between 2006 to 2021 in Isla Natividad, Baja California Sur, Mexico. Abundances of algae and the number of stipes of each individual algae can be found in the data set. Also, the dates when the transects were done, the site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted, and the species name of algae counted.

Ecological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate  of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.
DOI: 10.26008/1912/bco-dmo.907373.1
title: Uniform point contact (UPC) transect data from Isla Natividad from 2006 to 2021

description: This dataset encompasses information about Uniform point contact (UPC) transects between 2006 to 2021 in Isla Natividad. UPC refers to the information about the substrate where the transect is laid. Every meter (along the 30m transect) you identify what type of substrate there is (e.g., sand, cobble, boulder, reef, other such as anthropogenic), what type of cover there is (e.g., none, brown algae, green algae, red algae, crustose coralline algae, mobile invertebrates, sessile invertebrates or seagrass) and the height of the relief (e.g., less than 10cm, between 10cm and 1m, between 1m and 2m or more than 2m). With this information you can assess the kelp forest ecosystem. This dataset also has information about the dates when the transects were done, site, the name of the diver, the depth the transect was laid, if the site was a marine reserve or not, if the site is inside a marine protected area or not, the latitude and longitude of the sites, the temperature of the water, the number of transect from where the information was counted and the total of substrate, cover and relief points.

Ecological monitoring is important to collect data of species that inhabit an specific ecosystem. For this data set, we present all the data form 2006 to 2021 on algae, marine invertebrates, fish and uniform point contact at six different sites in Isla Natividad off the coast of Baja California Sur, Mexico. Data was collected once a year by trained divers as a collaborative effort from Stanford University, non-governmental organizations, and fishing cooperative federations. These data provides the abundaces of algae, invertebrates, fish and substrate  of Isla Natividad over the spam of 15 years and may be use to assess changes in the ecosystems after shocks such as hypoxic events or marine heatwaves.
DOI: 10.26008/1912/bco-dmo.906927.1
title: Single-factor temperature experiment physiology and carbonate chemistry from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022

description: These raw data contain physiological data collected from laboratory experiments with Pseudo-nitzschia australis.  This dataset includes replicate data for single-factor temperature experiment physiology and carbonate chemistry.

See &quot;Related Datasets&quot; for other physiological measurements published as part of these experiments. See the results publication Kelley et al. (2003) for more detail.  The following description provides details for all related physiological measurement datasets.

These physiological measurements include: growth rates, domoic acid quotas, domoic acid production rates, net primary productivity, and nitrogen use efficiencies. Also included are pH and DIC measurement used to characterize the carbonate system. 

These data revealed novel insights into P. australis bloom dynamics and may be useful to harmful algal bloom modelers and were collected and analyzed by Kyla Kelly, Amjad Mansour, Chen Liang, Andrew Kim, Lily Mancini, Dr. Matthew Bertin, Dr. Bethany Jenkins, Dr. David Hutchins, and Dr. Fei-Xue Fu.
DOI: 10.26008/1912/bco-dmo.906938.1
title: CO2 experiment physiology and carbonate chemistry from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022

description: These raw data contain physiological data collected from laboratory experiments with Pseudo-nitzschia australis.  This dataset includes replicate data for CO2 experiment physiology and carbonate chemistry.

See &quot;Related Datasets&quot; for other physiological measurements published as part of these experiments. See the results publication Kelley et al. (2003) for more detail.  The following description provides details for all related physiological measurement datasets.

These physiological measurements include: growth rates, domoic acid quotas, domoic acid production rates, net primary productivity, and nitrogen use efficiencies. Also included are pH and DIC measurement used to characterize the carbonate system. 

These data revealed novel insights into P. australis bloom dynamics and may be useful to harmful algal bloom modelers and were collected and analyzed by Kyla Kelly, Amjad Mansour, Chen Liang, Andrew Kim, Lily Mancini, Dr. Matthew Bertin, Dr. Bethany Jenkins, Dr. David Hutchins, and Dr. Fei-Xue Fu.
DOI: 10.26008/1912/bco-dmo.906757.1
title: Total dissolvable iron concentrations in rainwater from weekly sampling at Tudor Hill Bermuda between November 2018 and March 2020.

description: These data include total-dissolvable iron concentrations in rainwater and corresponding rainfall amounts for composite samples collected during approximately weekly intervals on the sampling tower at Tudor Hill, Bermuda, between November 2018 and March 2020. The data allow estimates of the wet deposition of iron to the Bermuda region over the period of the BAIT project, which included cruises in the Bermuda Atlantic Time-series Study (BATS) region in March, May, August and November 2019. The rain samples were collected by staff of the Bermuda Institute of Ocean Sciences (the Tudor Hill tower facility is managed by Dr. Andrew Peters, with funding from NSF), and sample processing and analyses were completed in the laboratory of Dr. Peter Sedwick at Old Dominion University.
DOI: 10.26008/1912/bco-dmo.906770.1
title: Atmospheric concentrations of aerosol iron from samples collected at Tudor Hill Bermuda between November 2018 and March 2020.

description: These data include the atmospheric concentrations of aerosol iron (total, deionized-water-soluble, and dilute-acetic-acid-soluble) derived from analysis of composite aerosol samples collected during approximately weekly intervals on the sampling tower at Tudor Hill, Bermuda, between November 2018 and March 2020. The data allow estimates of the dry deposition of iron to the Bermuda region over the period of the BAIT project, which included cruises in the Bermuda Atlantic Time-series Study (BATS) region in March, May, August and November 2019. The rain samples were collected by staff of the Bermuda Institute of Ocean Sciences (the Tudor Hill tower facility is managed by Dr. Andrew Peters, with funding from NSF), and sample processing and analyses were completed in the laboratory of Dr. Peter Sedwick at Old Dominion University.
DOI: 10.26008/1912/bco-dmo.906949.1
title: Cluster (combined temperature, nutrient concentration, and CO2) results from laboratory experiments with Pseudo-nitzschia australis conducted from 2021 to 2022

description: These raw data contain physiological data collected from laboratory experiments with Pseudo-nitzschia australis.  This dataset includes results of cluster experiments of combined temperature, nutrient concentration, and CO2 in order to reflect upwelling, heatwaves, and extreme heatwaves in the natural environment. 

See &quot;Related Datasets&quot; for other physiological measurements published as part of these experiments. See the results publication Kelley et al. (2003) for more detail.  The following description provides details for all related physiological measurement datasets.

These physiological measurements include: growth rates, domoic acid quotas, domoic acid production rates, net primary productivity, and nitrogen use efficiencies. Also included are pH and DIC measurement used to characterize the carbonate system. 

These data revealed novel insights into P. australis bloom dynamics and may be useful to harmful algal bloom modelers and were collected and analyzed by Kyla Kelly, Amjad Mansour, Chen Liang, Andrew Kim, Lily Mancini, Dr. Matthew Bertin, Dr. Bethany Jenkins, Dr. David Hutchins, and Dr. Fei-Xue Fu.
DOI: 10.26008/1912/bco-dmo.872486.2
title: Branching data from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000

description: This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes per capita branching ratio, number of new branches, and number of new branches per mother branch for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.
DOI: 10.26008/1912/bco-dmo.872600.2
title: Branch extension measurements from a clipping experiment conducted on the coral Antillogorgia elisabethae at two sites in the Bahamas determined from June 1999 to June 2000

description: This dataset results from an experiment in which colonies of the coral Antillogorgia elisabethae were clipped to simulate harvesting/disturbance at 2 sites in the Bahamas, one at Great Abaco and another at San Salvador Island. This dataset includes branch extension measurements for colonies that were clipped to 10 or 4 branches or not clipped. Version 2 of this dataset, created on 2023-11-07, includes a correction to the latitude of the Abaco site.
DOI: 10.26008/1912/bco-dmo.911102.1
title: Diatom amplicon sequencing variants (ASVs) from Narragansett Bay, Rhode Island, USA from 2008-2014

description: These data include diatom composition information from a fixed sampling site in Narragansett, Bay, RI, USA over six years between dates 2008-12-09 and 2014-12-30. Sampling occurred monthly from 2008 to 2013 and twice per month in 2014. Diatom composition data, in the form of amplicon sequencing variants, were obtained via high throughput sequencing of filtered biomass samples.

Diatoms are important contributors to marine primary production; however, their vast diversity makes species-level identification challenging. This dataset, collected over many years, includes diatom composition data at a more detailed level than ever before observed in Narragansett Bay and highlights the importance of time series for understanding phytoplankton dynamics in coastal systems. These data were collected by various students over the years with supervision from Dr. Tatiana Rynearson of URI's Graduate School of Oceanography. Diana Fontaine processed these data and together, Dr. Rynearson and her student Ms. Fontaine published their results in Limnology and Oceanography.
DOI: 10.26008/1912/bco-dmo.911258.1
title: Concentration of inorganic nutrients, primary productivity measurements and phytoplankton cell concentration in seawater samples from the Malaspina 2010 Circumnavigation Expedition (VitaMaps project)

description: B vitamins (thiamin, B1; biotin B7; cobalamin, B12) are organic molecules necessary for all the biological transformations of the chemical elements that support life on Earth. Because most organisms lack the ability to synthesize several vitamins, their vitamin needs and environmental accessibility could define which, when, and where specific phytoplankton species flourish. Despite the early discovery of their relevance in the 1940s, most current marine vitamin research is still based on laboratory experiments or studies focusing on the biological responses of B vitamin additions on algae and bacteria. However, geographical distributions of B vitamins in the ocean are mostly unknown, as they have only been measured in a few marine basins. 

This dataset contains B vitamin distribution measurements and ancillary (physical, chemical, and biological) parameters to elucidate the effects of vitamin availability on phytoplankton and bacteria species in surface waters of the world ocean collected during the Malaspina circumnavigation expedition. The different B vitamins were analyzed using a triple quadrupole mass spectrometer coupled to a liquid chromatography system after a solid-phase extraction with a C18 resin. This global map of vitamins is being used to determine the importance of dissolved B vitamins in microbial species biogeography, a still unresolved ecological riddle. Another objective of the study is to establish how ambient vitamin concentrations, combined with bioactive trace elements and macronutrients, promote changes in the relative abundance of different eukaryotic and prokaryotic plankton species on the surface ocean.
DOI: 10.26008/1912/bco-dmo.914399.1
title: 18S rRNA amplicon sequencing of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020

description: Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from two geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. Piccard and Von Damm vent fields are situated 20 km apart at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. This data adds to our growing knowledge of the biogeography of deep-sea microbial eukaryotes.
DOI: 10.26008/1912/bco-dmo.847425.1
title: Sequences from the coral Acropora cervicornis determined before and after bleaching at the Mote Marine Laboratory in August and September 2015

description: This dataset contains information about sequences of coral the Acropora cervicornis collected from host colonies (genets) at the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys, USA in August and September of 2015. The sequence data can be found in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) database under accession number SRP267474 with the associated BioProject PRJNA639601.
DOI: 10.26008/1912/bco-dmo.897547.1
title: Relative abundances of different Syndiniales groups from surface water samples collected at the Martha's Vineyard Coastal Observatory (MVCO) monthly or bimonthly between 2013 and 2021

description: The diversity, persistence, and relative abundance of Syndiniales parasite taxa at the Martha's Vineyard Coastal Observatory (MVCO) were examined in surface water samples collected approximately monthly or bimonthly between 2013 and 2021. V4 amplicons from extracted DNA were amplified, sequenced (MiSeq), and taxonomically identified. The relative abundances of different Syndiniales groups and clades were determined and compared to identify the dominant taxa, when they occurred, and how they differed from studies in other marine regions.
DOI: 10.26008/1912/bco-dmo.908026.1
title: Reef seawater biogeochemistry data from samples collected in the Jardines de la Reina reef-system, Cuba in November of 2017

description: Reef depth and reef surface seawater samples were collected from reefs in Jardines de la Reina and subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (inorganic and organic nutrient concentrations, microbial cell abundances, chlorophyll a concentrations, and physicochemical properties). 
Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS1820. The link is: https://www.ebi.ac.uk/metabolights/MTBLS1820/.

These data were published in Weber et al. (2020).
DOI: 10.26008/1912/bco-dmo.843270.1
title: Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017

description: This dataset contains sampling and accession information for extracellular reef seawater metabolites collected from two different depths across 9 different shallow forereefs in the Jardines de la Reina reef-system, Cuba. Reef seawater samples, collected in duplicate per depth and location, were subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (see Related Datasets for access to the biochemistry data). Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS1820.(Accessible from https://www.ebi.ac.uk/metabolights/MTBLS1820/). 

These data were published in Weber et al. (2020).
DOI: 10.26008/1912/bco-dmo.897734.1
title: Group II Syndiniales infected host and dinospore counts determined from CARD-FISH hybridization carried out on samples collected at the Martha's Vineyard Coastal Observatory (MVCO) monthly or bimonthly from September 2019 to October 2020

description: This dataset includes Group II Syndiniales infected host and dinospore counts determined from CARD-FISH hybridization carried out on water samples collected at the Martha's Vineyard Coastal Observatory (MVCO) monthly or bimonthly from September 2019 to October 2020 from about 2 meters below the surface. Samples were collected using bucket casts or a CTD. The detailed hybridization method using the ALV01 (Group II) probe can be found at dx.doi.org/10.17504/protocols.io.bsxmnfk6.
DOI: 10.26008/1912/bco-dmo.913222.1
title: Photosynthetic pigments from sea ice samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019

description: This dataset includes concentrations of photosynthetic pigments from sea ice samples at various stages of melt collected during the spring melt of November and December 2019 from coastal waters along the Western Antarctic Peninsula. Samples were collected during the R/V Nathaniel B. Palmer cruise NBP1910. Pigments were determined by high-performance liquid chromatography (HPLC).
DOI: 10.26008/1912/bco-dmo.913566.1
title: Particulate organic carbon and particulate nitrogen from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019

description: This dataset includes concentrations of particulate organic carbon (POC) and particulate nitrogen (PN) from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019.
DOI: 10.26008/1912/bco-dmo.913655.1
title: Physical profiles of temperature, salinity, and brine volume in sea ice from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019

description: This dataset includes physical profiles of temperature, salinity, and brine volume in sea ice from samples collected on R/V Nathaniel B. Palmer cruise NBP1910 along the Western Antarctic Peninsula from November to December 2019.
DOI: 10.26008/1912/bco-dmo.891918.1
title: Dissolved aluminum (Al) and manganese (Mn) and total dissolvable Al and Mn from subsurface water samples collected during three cruises in 2010 in the northern Gulf of Alaska

description: Water samples were collected along a transect during three cruises in 2010 (7-9 April, 5-7 May, and 27-29 July) in the northern Gulf of Alaska, from the mouth of the Copper River to about 50 kilometers past the shelf break. Vertical profiles were collected using Teflon-lined Niskin bottles attached to a Spectra™ (Dyneema) line and triggered using Teflon-lined messengers. Additionally, profiles of salinity, temperature, fluorescence, and turbidity were measured with a Seabird SBE16 CTD, deployed at the same time as the collection of the subsurface water samples. Water samples were processed in the shipboard clean lab within three hours of collection. Dissolved samples were filtered using acid-washed 0.45-micrometer Pall-Supor filters. All samples were acidified to pH 1.8 using Seastar grade HCl within 3 days and stored for 5 years before analysis.

Filtered samples were analyzed for dissolved aluminum (Al) and unfiltered samples were analyzed for total dissolvable Al using Flow Injection Analysis (Resing and Measures 1994) using fluorescent detection of lumogallion. Filtered samples were analyzed for dissolved manganese (Mn) and unfiltered samples were analyzed for total dissolvable Mn according to the method of Resing and Mottl (1992), which uses spectroscopic detection of leuchomalachite green.