cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2bz54n
title: CCDC 2173941: Experimental Crystal Structure Determination

description: Related Article: Klaus Roths, Roland Fröhlich, Constantin G. Daniliuc, Rudolf Aumann|2022|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.34808/gcrh-sn34
title: Intradermal nevus - Female, 27 - Tissue image [6060730023686551]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 27Clinical description: Lesion of skin of forehead with dimensions of 0,4 x 0,4 x 0,5 cm.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Intradermal nevusResult of the histopathological examination: Dermal melanocytic neavus.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of foreheadType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/vek5-br66
title: Mucoepidermoid carcinoma - Male, 87 - Tissue image [6060730023662921]

description: This is the histopathological image of OTHER AND ILL-DEFINED SITES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 87Clinical description: Tumor of neck on the left side.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MUCOEPIDERMOID NEOPLASMSDiagnosis: Mucoepidermoid carcinomaResult of the histopathological examination: Mucoepidermoid carcinoma: p63+, MUC5+, mucicarmine single cells +, GFAP single cells +, SMA-, S100-, Ki-67 70%, HER2-, DOG1+, EMA+, CEA-.Sample:Material: FFPECollecting method: Surgical specimenTopography: OTHER AND ILL-DEFINED SITESOrgan: OTHER AND ILL-DEFINED SITESTissue: Head, face or neck, NOSType of staining: positive/HEStaining: MucicarmineAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/qwez-y928
title: Tubular carcinoma - Female, 47 - Tissue image [6060730023667971]

description: This is the histopathological image of BREAST tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 47Clinical description: Palpable tumor of right breast. 8 x 7 mm tumor of breast on ultrasound.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Tubular carcinomaResult of the histopathological examination: Tubular carcinoma of breast  NHG1 (1+2+1: 0 mitoses/10HPH): ER+, PR+, HER2 1, Ki-67 5%.Sample:Material: FFPECollecting method: Vacuum-assisted biopsyTopography: BREASTOrgan: BREASTTissue: Breast, NOSType of staining: positive/IHCStaining: Not applicableAntibody: PRTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/gmps-ea60
title: MALT lymphoma - Male, 71 - Tissue image [6060730023688521]

description: This is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: History of MALT lymphoma. Ulceration of stomach.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: MALT lymphomaResult of the histopathological examination: Extranodal marginal zone B cell lymphoma (MALT-lymphoma): CD20+, CD3-, Ki-67 10-20%Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: STOMACHTissue: Cardia, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/0xw1-4a27
title: Myoepithelioma, NOS - Male, 71 - Tissue image [6060730023673181]

description: This is the histopathological image of PAROTID GLANID tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: 3 cm palpable tumor of left parotid gland.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: COMPLEX MIXED AND STROMAL NEOPLASMSDiagnosis: Myoepithelioma, NOSResult of the histopathological examination: Myoepithelioma: CKAE1/AE3+, VIM+, EMA-, GFAP+, CK14-, SMA-, Calponin-, S100+, CD10 single cells+, CK5/6 focally+, CEA-, CK7 focally+, Ki-67 2%.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: PAROTID GLANIDTissue: Parotid glandType of staining: positive/IHCStaining: Not applicableAntibody: VimentinTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/v731-st81
title: Myeloma, NOS - Female, 71 - Tissue image [6060730023689511]

description: This is the histopathological image of EYE AND ADNEXA tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: Tumor of orbit.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: PLASMA CELL TUMORSDiagnosis: Myeloma, NOSResult of the histopathological examination: Myeloma.Sample:Material: FFPECollecting method: Surgical specimenTopography: EYE, BRAIN AND OTHER PARTS OF CENTRAL NERVOUS SYSTEMOrgan: EYE AND ADNEXATissue: Orbit, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/bq9c-0523
title: Melanoma, metastatic - Female, 80 - Tissue image [6060730023674341]

description: This is the histopathological image of LYMPH NODES tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 80Clinical description: History of melanoma. Enlarged iliac lymph nodes.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: NEVI AND MELANOMASDiagnosis: Melanoma, metastaticResult of the histopathological examination: Metastasis of melanoma to lymph node.Sample:Material: FFPECollecting method: Excision of lesionsTopography: LYMPH NODESOrgan: LYMPH NODESTissue: Iliac lymph nodeType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/eeaw-2v26
title: Adenoid cystic carcinoma - Male, 66 - Tissue image [6060730023677041]

description: This is the histopathological image of OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 66Clinical description: 5 cm hard tumor of left submandibular gland. CT: 56 x 35 x 44 mm well-circumscribed tumor of neck.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Adenoid cystic carcinomaResult of the histopathological examination: Adenoid cystic carcinoma.Sample:Material: FFPECollecting method: Surgical specimenTopography: LIP, ORAL CAVITY AND PHARYNXOrgan: OTHER AND UNSPECIFIED MAJOR SALIVARY GLANDSTissue: Submandibular glandType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/c519-ea18
title: Squamous cell carcinoma, keratinizing, NOS - Female, 96 - Tissue image [6060730023684091]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 96Clinical description: 1,6 x 1,1 x 0,4 cm brown lesion of skin of face.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, keratinizing, NOSResult of the histopathological examination: Squamous cell carcinoma of skin, keretinizing type, G1.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of faceType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/3axy-k638
title: Mixed germ cell tumor - Male, 31 - Tissue image [6060730023678721]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: Two tumors of left testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Mixed germ cell tumorResult of the histopathological examination: Two tumors of testis: seminoma and mixed germ cell tumor of testis (embryonal carcinoma and teratoma). Germ cell neoplasia in situ is present (GCNIS). Embryonal carcinoma: CD30+, OCT4+, AFP single cells +, Glypican single cells +, hCG single cells +. Seminoma: CD117+, PLAP+, OCT4+, AFP-, CD30-.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/IHCStaining: Not applicableAntibody: Alpha-1-FetoproteinTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/3n58-1w84
title: MALT lymphoma - Male, 71 - Tissue image [6060730023687651]

description: This is the histopathological image of STOMACH tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 71Clinical description: History of MALT lymphoma. Ulceration of stomach.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: MATURE B-CELL LYMPHOMASDiagnosis: MALT lymphomaResult of the histopathological examination: Extranodal marginal zone B cell lymphoma (MALT-lymphoma): CD20+, CD3-, Ki-67 10-20%Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: STOMACHTissue: Cardia, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/e8eb-mq30
title: Squamous cell carcinoma, nonkeratinizing, NOS - Male, 58 - Tissue image [6060730023686891]

description: This is the histopathological image of ANUS AND ANAL CANAL tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 58Clinical description: 41 x 24 x 58 mm ulcerated tumor of anal canal.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, nonkeratinizing, NOSResult of the histopathological examination: Squamous cell carcinoma, keratinizing type: CK5/6+, CKAE1/AE3+, CK7-, CK20-.Sample:Material: FFPECollecting method: Surgical biopsyTopography: DIGESTIVE ORGANSOrgan: ANUS AND ANAL CANALTissue: Anal canalType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/agcb-rt40
title: Mixed germ cell tumor - Male, 31 - Tissue image [6060730023676491]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: Two tumors of left testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Mixed germ cell tumorResult of the histopathological examination: Two tumors of testis: seminoma and mixed germ cell tumor of testis (embryonal carcinoma and teratoma). Germ cell neoplasia in situ is present (GCNIS). Embryonal carcinoma: CD30+, OCT4+, AFP single cells +, Glypican single cells +, hCG single cells +. Seminoma: CD117+, PLAP+, OCT4+, AFP-, CD30-.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/IHCStaining: Not applicableAntibody: Glypican-3Technology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/fvww-vc64
title: Adenocarcinoma, NOS - Female, 61 - Tissue image [6060730023683061]

description: This is the histopathological image of COLON tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 61Clinical description: 4 cm polypoid tumor of sigmoid colon. Surgical biopsy: colonic adenocarcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: ADENOMAS AND ADENOCARCINOMASDiagnosis: Adenocarcinoma, NOSResult of the histopathological examination: Adenocarcinoma of colon G2. Carcinoma invade pericolic fatty tissue (pT3).Sample:Material: FFPECollecting method: Surgical specimenTopography: DIGESTIVE ORGANSOrgan: COLONTissue: Sigmoid colonType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/hszx-er63
title: Seminoma, NOS - Male, 22 - Tissue image [6060730023679951]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 22Clinical description: Tumor of left testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Seminoma, NOSResult of the histopathological examination: Seminoma of testis. Rete testis with seminoma infiltration. Vascular invasion is present ( in spermatic cord also). Germ cell neoplasia in situ is present.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/9ra8-qr79
title: Squamous cell carcinoma, keratinizing, NOS - Female, 62 - Tissue image [6060730023679171]

description: This is the histopathological image of SKIN tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 62Clinical description: 1,5 x 1,3 x 0,6 cm light brown ulcerated lesion of skin of nose.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: SQUAMOUS CELL NEOPLASMSDiagnosis: Squamous cell carcinoma, keratinizing, NOSResult of the histopathological examination: Squamous cell carcinoma of skin, keretinizing type G1.Sample:Material: FFPECollecting method: Excision of lesionsTopography: SKINOrgan: SKINTissue: Skin of noseType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/z5cz-2b57
title: Mixed germ cell tumor - Male, 31 - Tissue image [6060730023673321]

description: This is the histopathological image of TESTIS tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 31Clinical description: Two tumors of left testis.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: GERM CELL NEOPLASMSDiagnosis: Mixed germ cell tumorResult of the histopathological examination: Two tumors of testis: seminoma and mixed germ cell tumor of testis (embryonal carcinoma and teratoma). Germ cell neoplasia in situ is present (GCNIS). Embryonal carcinoma: CD30+, OCT4+, AFP single cells +, Glypican single cells +, hCG single cells +. Seminoma: CD117+, PLAP+, OCT4+, AFP-, CD30-.Sample:Material: FFPECollecting method: Surgical specimenTopography: MALE GENITAL ORGANSOrgan: TESTISTissue: Testis, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/x6yr-av56
title: High grade serous carcinoma - Female, 72 - Tissue image [6060730023683611]

description: This is the histopathological image of OVARY tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 72Clinical description: Tumors of left and right ovary. Suspicion of ovarian carcinoma.Gender: FemaleDiagnosis:Classification: ICD-O_3.2Classification code: CYSTIC, MUCINOUS AND SEROUS NEOPLASMSDiagnosis: High grade serous carcinomaResult of the histopathological examination: High grade serous carcinoma of ovary:  CK7+, CA 125+, WT1+, PAX8+.Sample:Material: FFPECollecting method: Surgical specimenTopography: FEMALE GENITAL ORGANSOrgan: OVARYTissue: OvaryType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.34808/vxap-va09
title: Papillary urothelial carcinoma, non-invasive - Male, 60 - Tissue image [6060730023692971]

description: This is the histopathological image of BLADDER tissue sample obtained in Medical University Gdańsk and deposited in ZMDL-GUMED. The sample image was taken using: Pannoramic 250 3DHistech slide scanner (20x magnification) and saved to DICOM format. The detailed information about the patient, sample, and diagnosis are as follows: Patient:Age: 60Clinical description: No clinical data.Gender: MaleDiagnosis:Classification: ICD-O_3.2Classification code: TRANSITIONAL CELL PAPILLOMAS AND CARCINOMASDiagnosis: Papillary urothelial carcinoma, non-invasiveResult of the histopathological examination: Non-invasive papillary urothelial carcinoma, low-grade.Sample:Material: FFPECollecting method: Surgical biopsyTopography: URINARY TRACTOrgan: BLADDERTissue: Bladder, NOSType of staining: positive/HEStaining: Not applicableAntibody: Not applicableTechnology:Equipment: Pannoramic 250 3DHistechLens: 20xOrganization:Source: Medical University Gdańsk
DOI: 10.6084/m9.figshare.19184878
title: Changes in circulating microRNAs following head impacts in soccer

description: To explore the short-term effects of accidental head impacts and repetitive headers on circulating microRNAs, accounting for the effects of high-intensity exercise alone. Blood samples were collected from professional soccer players at rest. Repeat samples were drawn 1 h and 12 h after three conditions: (1) accidental head impacts in a match, (2) repetitive headers during training, and (3) high-intensity exercise. 89 samples were screened to detect microRNAs expressed after each exposure. Identified microRNAs were then validated in 98 samples to determine consistently deregulated microRNAs. Deregulated microRNAs were further explored using bioinformatics to identify target genes and characterize their involvement in biological pathways. Accidental head impacts led to deregulation of eight microRNAs that were unaffected by high-intensity exercise; target genes were linked to 12 specific signaling pathways, primarily regulating chromatin organization, Hedgehog and Wnt signaling. Repetitive headers led to deregulation of six microRNAs that were unaffected by high-intensity exercise; target genes were linked to one specific signaling pathway (TGF-β). High-intensity exercise led to deregulation of seven microRNAs; target genes were linked to 31 specific signaling pathways. We identified microRNAs specific to accidental head impacts and repetitive headers in soccer, potentially being useful as brain injury biomarkers.