cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3387738
title: Data and model scripts for "Temporal shifts in iso/anisohydry revealed from daily observations of plant water potential in a dominant desert shrub"

description: Model code and data as used for the first revision submitted to New Phytologist, Sept. 2019. Models are coded in JAGS and run in R via the package "rjags." Two model versions are presented: 1) "mod_SAM.R" and "script_SAM.R" run the full, time-varying SAM model, utilizing both the plant water potential ("res.Rdata") and the environmental covariate data ("cov2.Rdata") and associated initial values ("initsSAM.Rdata") 2) "mod_SIMPLE.R" and "script_SIMPLE.R" run the simple, time-invariant model, utilizing only the plant water potential data ("res.Rdata") and associated initial values ("initsSIMPLE.Rdata")
DOI: 10.5281/zenodo.3387739
title: Data and model scripts for "Temporal shifts in iso/anisohydry revealed from daily observations of plant water potential in a dominant desert shrub"

description: Model code and data as used for the first revision submitted to New Phytologist, Sept. 2019. Models are coded in JAGS and run in R via the package "rjags." Two model versions are presented: 1) "mod_SAM.R" and "script_SAM.R" run the full, time-varying SAM model, utilizing both the plant water potential ("res.Rdata") and the environmental covariate data ("cov2.Rdata") and associated initial values ("initsSAM.Rdata") 2) "mod_SIMPLE.R" and "script_SIMPLE.R" run the simple, time-invariant model, utilizing only the plant water potential data ("res.Rdata") and associated initial values ("initsSIMPLE.Rdata")
DOI: 10.25345/c5hm1r
title: MassIVE MSV000084286 - GNPS - MSMS-Chooser Methods - Q Exactive
title: The MSMS-Chooser workflow enables the rapid data acquisition and analysis of chemical standards and uploads the MSMS spectra to the community-driven mass spectrometry platform GNPS. Tune methods, instrument methods, and test data generated from the Q Exactive for the MSMS-Chooser workflow can be found here.
DOI: 10.5523/bris.1a6a4k03d08il25t9lwji598qu
title: Data from Identifying time-dependent changes in the morphology of an individual aerosol particle from their light scattering patterns (08-2019)

description: The physical, chemical, and biological properties of an aerosol droplet/particle are dependent on the morphology of the droplet/particle itself; for example, a liquid droplet will be processed by oxidants in the gas phase in a fundamentally different way than a solid particle. Additionally, given their small size, aerosol droplets may change phase over timescales in the order of milliseconds (e.g. deliquescence or crystallisation). Thus, ability to rapidly and easily estimate the morphology of a droplet/particle is critical, especially in the interpretation of complex aerosol processes such as spray drying and dissolution. To be reported here is a novel method that uses the forward scattered light (~32o &lt; θ &lt; ~58o) passed through a droplet to determine the droplet/particles morphology. The algorithm was developed through the qualitative analysis of over one million individual phase functions of various particle morphologies. The algorithm can differentiate between four different morphologies: homogeneous, core/shell, with inclusions, and non-spherical/inhomogeneous. The algorithm is applicable to droplets between ~5 to ~30 m in radius. The rate of phase analysis is dependent on the rate in which the light scatter can be collected, in the data presented here a particle’s morphology is reported every 10 milliseconds. The accuracy of the phase identification with the algorithm proposed in this work is very high (&gt;90%); its utility is strengthened by the high frequency of the collection of scattered light, which allows an individual droplet to be probed upwards of over 100 times per second. Although not absolute on every phase function analysis, when coupled with repetition and high throughput, the algorithm presented here can be a valuable tool to easily and readily determine particle morphology in dynamic aerosol systems.
DOI: 10.25345/c5cw8x
title: MassIVE MSV000084287 - GNPS - Chemical Standard to GNPS Library - GNPS00002
title: This is the second test dataset for the new Chemical Standard to GNPS Library SOP workflow.
DOI: 10.18453/rosdok_id00002524
title: Terrestrial, Coastal and Marine Ecosystem Service Matrix

description: This research item is a revised and enlarged version of a qualitative assessment matrix for the appraisal of ecosystem service potentials. The product is a simple tool for scoring landscape and seascape types with respect to their abilities to provide provisioning, regulating and cultural ecosystem services as well as indicators of ecosystem state by applying criteria of ecosystem integrity.
DOI: 10.5281/zenodo.3387368
title: NewsEye / READ OCR training dataset from Austrian Newspapers (19th C.)

description: The dataset comprises Austrian newspaper pages from 19th and early 20th century with carefully corrected text. The page images were provided by the Austrian National Library and comprise 148 pages (training set) and 13 pages (validation set). The data are formed according to the PAGE format (cf. Cf. https://github.com/PRImA-Research-Lab/PAGE-XML/) and were produced with the Transkribus platform with support of the NewsEye and the READ project.
DOI: 10.5281/zenodo.3387369
title: NewsEye / READ OCR training dataset from Austrian Newspapers (19th C.)

description: The dataset comprises Austrian newspaper pages from 19th and early 20th century with carefully corrected text. The page images were provided by the Austrian National Library and comprise 148 pages (training set) and 13 pages (validation set). The data are formed according to the PAGE format (cf. Cf. https://github.com/PRImA-Research-Lab/PAGE-XML/) and were produced with the Transkribus platform with support of the NewsEye and the READ project.
DOI: 10.6073/pasta/c5305ed770bedd16c579e4ccff95a252
title: Dissolved inorganic carbon and alkalinity of discrete water column samples, collected aboard Palmer LTER annual cruises of the Western Antarctic Peninsula, 1993 - 2018.

description: There is a temporal uncoupling between Antarctic phytoplankton and bacterial processes. This affects the coastal ecosystem carbon cycle. Our sampling strategy and experiments are designed to evaluate the hypotheses that this uncoupling is caused by:1) dissolved organic carbon - bacterial interactions,2) temperature effects, and 3) direct competition and chemical antagonism.
DOI: 10.25345/c50m2g
title: MassIVE MSV000084290 - Example Data for MALDI-TOF Intact Cell + Formic Acid (IDBac) in three formats: raw data, mzxml, tab
title: Full dataset can be found in the publication: https://doi.org/10.1073/pnas.1801247115 Method for acquisition can be found: https://doi.org/10.1073/pnas.1801247115 The IDBac "experiment" sqlite file was generated with IDBac version 1.1.10 https://github.com/chasemc/IDBacApp/releases/tag/1.1.10 https://doi.org/10.5281/zenodo.3241634 and https://doi.org/10.3791/59219
DOI: 10.25919/5d718ae05260c
title: Parkes observations for project PX500 semester 2019APRS_20

description: This proposal relates to time purchased by the Chinese Academy of Sciences for Parkes follow-up confirmation and timing of FAST discoveries. As the observing time has been purchased this proposal (and the related PX501) does not require TAC grading. The primary reason for submitting a proposal is to ensure an outreach statement and that the proposal is entered into OPAL for the data archive to access. The Chinese team have two time requests. The time scheduled for the first, relating to this proposal, will be allocated in blocks of 24 hours and the data will become available in the data archive with an 18 month embargo period. The second type of time will be scheduled in shorter blocks and the data archived with a 10 year embargo.
DOI: 10.5281/zenodo.3370029
title: Simulated corn yield, drainage nitrate load and residual soil nitrate as affected by weather, management and soil-state at seven long-term US Midwest research sites

description: This data set is the product of a factorial simulation experiment designed to quantify the impact of five environmental factors and five management practices on NO<sub>3</sub> leaching and yield in corn cropping systems. The simulation model used was the Agricultural Production Systems SImulator (APSIM; https://www.apsim.info/). Description of the simulation factors are provided in the metadata.txt file.
DOI: 10.5281/zenodo.3370030
title: Simulated corn yield, drainage nitrate load and residual soil nitrate as affected by weather, management and soil-state at seven long-term US Midwest research sites

description: This data set is the product of a factorial simulation experiment designed to quantify the impact of five environmental factors and five management practices on NO<sub>3</sub> leaching and yield in corn cropping systems. The simulation model used was the Agricultural Production Systems SImulator (APSIM; https://www.apsim.info/). Description of the simulation factors are provided in the metadata.txt file.
DOI: 10.5281/zenodo.3387744
title: Science ready spectra and their best-fitting models described in the research paper ``Internal dynamics and stellar content of nine ultra-diffuse galaxies in the Coma cluster prove their evolutionary link with dwarf early-type galaxies'' by Chilingarian et al.

description: Science ready spectra of nine ultra-diffuse galaxies in the Coma cluster collected with the Binospec multi-object spectrograph and their best-fitting PEGASE.HR templates obtained using the NBursts full spectrum fitting code. These spectra were presented in the paper ``Internal dynamics and stellar content of nine ultra-diffuse galaxies in the Coma cluster prove their evolutionary link with dwarf early-type galaxies'' by Chilingarian et al. accepted for publication in the Astrophysical Journal on Sep/3/2019 (arXiv:1901.05489). Each spectrum is presented as a binary FITS table, which contains a spectrum (wavelength, flux, uncertainties), best-fitting template, best-fitting parameters (radial velocity, age, metallicity), and a pixel mask used in the fitting procedure. For six galaxies there are two files provided: (i) one-dimensional optimally extracted integrated spectrum and (ii) two dimensional spectrum for spatially resolved radial velocity information. For the remaining three galaxies, only spatially resolved spectra are provided.
DOI: 10.5281/zenodo.3387745
title: Science ready spectra and their best-fitting models described in the research paper ``Internal dynamics and stellar content of nine ultra-diffuse galaxies in the Coma cluster prove their evolutionary link with dwarf early-type galaxies'' by Chilingarian et al.

description: Science ready spectra of nine ultra-diffuse galaxies in the Coma cluster collected with the Binospec multi-object spectrograph and their best-fitting PEGASE.HR templates obtained using the NBursts full spectrum fitting code. These spectra were presented in the paper ``Internal dynamics and stellar content of nine ultra-diffuse galaxies in the Coma cluster prove their evolutionary link with dwarf early-type galaxies'' by Chilingarian et al. accepted for publication in the Astrophysical Journal on Sep/3/2019 (arXiv:1901.05489). Each spectrum is presented as a binary FITS table, which contains a spectrum (wavelength, flux, uncertainties), best-fitting template, best-fitting parameters (radial velocity, age, metallicity), and a pixel mask used in the fitting procedure. For six galaxies there are two files provided: (i) one-dimensional optimally extracted integrated spectrum and (ii) two dimensional spectrum for spatially resolved radial velocity information. For the remaining three galaxies, only spatially resolved spectra are provided.
DOI: 10.6073/pasta/eeb6775043b106808382ca6abc45cfcd
title: Dissolved inorganic nutrients including 5 macro nutrients: silicate, phosphate, nitrate, nitrite, and ammonium from water column bottle samples collected during annual cruise along western Antarctic Peninsula, 1991 - 2019.

description: The inorganic plant macronutrients dissolved phosphate, silicate, nitrate, nitrite and ammonium are the major sources of nutrition for phytoplankton growth in seawater (with sunlight and inorganic carbon). Macronutrient distributions reflect the large-scale circulation patterns in the oceans and are useful properties to delineate water masses. Dissolved inorganic nutrients samples are typically collected in every CTD/Rosette cast performed on the annual LTER cruises along the western Antarctic Peninsula. Water samples are analyzed for dissolved nutrients with recognized standard oceanographic protocols for nutrient autoanalyzers (continuous flow analyzers). In Antarctic waters, dissolved inorganic macronutrients are seldom depleted to limiting concentrations except during heavy prolonged phytoplankton blooms. This is due to the fact that phytoplankton growth is more often limited by light or iron, and to the short growing season.
DOI: 10.7910/dvn/rfriev/6cwlpq
title: AM_Pauini_PMDB.txt

description: :unav
DOI: 10.7910/dvn/rfriev/6ttwqn
title: stopW.RData

description: :unav
DOI: 10.7910/dvn/rfriev/f7hqj8
title: progs2016.tab

description: :unav
DOI: 10.7910/dvn/rfriev/6jjfgo
title: PE_Manari_PSB.txt

description: :unav
DOI: 10.7910/dvn/rfriev/7wkd1q
title: PE_Manari_PSDB.txt

description: :unav
DOI: 10.7910/dvn/rfriev/eshkqp
title: grotões[r4].R

description: :unav
DOI: 10.7910/dvn/rfriev/lbygru
title: AM_Pauini_PSB.txt

description: :unav
DOI: 10.7910/dvn/rfriev/qdymbu
title: progs2012.tab

description: :unav
DOI: 10.7910/dvn/rfriev/y5zmkj
title: grotoes.csv

description: :unav
DOI: 10.25345/c5vw88
title: MassIVE MSV000084291 - Example Data for MALDI-TOF Intact Cell + Formic Acid (IDBac) in three formats: raw data, mzxml, tab
title: Full dataset can be found in the publication: ( https://doi.org/10.1073/pnas.1801247115) Method for acquisition can be found: ( https://doi.org/10.1073/pnas.1801247115) The IDBac "experiment" sqlite file was generated with IDBac version 1.1.10 (https://github.com/chasemc/IDBacApp/releases/tag/1.1.10) (https://doi.org/10.5281/zenodo.3241634) and (https://doi.org/10.3791/59219)
DOI: 10.5066/p9ahfpin
title: Ecoregion Based Aquatic Gap Distribution Models for Common Fluvial Fishes of the Conterminous U.S.
DOI: 10.6073/pasta/f3709b002f0089129776356677b22989
title: Dissolved inorganic nutrients including 5 macro nutrients: silicate, phosphate, nitrate, nitrite, and ammonium from water column bottle samples collected between October and April at Palmer Station, 1991 - 2019.

description: The inorganic plant macronutrients dissolved phosphate, silicate, nitrate, nitrite and ammonium are the major sources of nutrition for phytoplankton growth in seawater (with sunlight and inorganic carbon). Macronutrient distributions reflect the large-scale circulation patterns in the oceans and are useful properties to delineate water masses. Dissolved inorganic nutrients samples are typically collected in every Niskin bottle sample. Water samples are analyzed for dissolved nutrients with recognized standard oceanographic protocols for nutrient autoanalyzers (continuous flow analyzers). In Antarctic waters, dissolved inorganic macronutrients are seldom depleted to limiting concentrations except during heavy prolonged phytoplankton blooms. This is due to the fact that phytoplankton growth is more often limited by light or iron, and to the short growing season.
DOI: 10.21227/2yxr-2f18
title: Flooding of broadcast messages in fixed topologies

description: These are OMNeT++ flooding simulation results of four-UAV FANET in three different topologies (described in the article).
DOI: 10.21227/na44-6103
title: Flooding of broadcast messages in fixed topologies

description: These are OMNeT++ flooding simulation results of four-UAV FANET in three different topologies (described in the article).
DOI: 10.25345/c5ww8k
title: MassIVE MSV000084282 - The anti-MRSA compound KCR inhibits protein synthesis in Staphylococcus aureus
title: S aureus was treated in triplicate with 3-O-alpha-L-(2",3"-di-p-coumaroyl)rhamnoside (KCR), oxacillin or vehicle and quantitative proteomic analysis was carried out using isobaric tags and mass spectrometry. 1190 proteins were identified and 552 were affected by KCR (q&lt;0.01). Ontology analysis identified 6 distinct translation-related categories that were affected by KCR (PIANO, 10% false-discovery rate) including structural constituent of ribosome, translation, rRNA binding, tRNA binding, tRNA processing and aminoacyl-tRNA ligase activity. Median fold changes (KCR vs Control) for small and large ribosomal components were 1.46 and 1.43 respectively.
DOI: 10.7910/dvn/hhxdxr/40nsj1
title: Sullivan & Karreth Strategies and Tactics in Armed Conflict_Version 1.tab

description: :unav
DOI: 10.7910/dvn/hhxdxr/r7xnsp
title: STAC Codebook and updated Bibliography_September 2019.pdf

description: :unav
DOI: 10.5281/zenodo.3351668
title: MOSIDEO: Sea ice properties and oil concentrations measured during the HSVA experiment during MOSIDEO

description: Physical ice properties (porosity, permeability and brine volume fraction), and oil concentration measured on collected ice cores during the experiments. Oil concentrations are measured using a UV-fluorescence meter TD500TM (Turner Designs Hydrocarbon Instruments, Inc.) Ice temperature measured in-situ with thermocouple strings Porosity and permeability fields are computed from ice and temperature profiles using semi-empirical equations (Cox and Weeks, 1983; Golden et al., 2009). The oil intake and pore space saturation in oil (oil saturation) are derived from acoustic data of the oil/water and oil/ice interface position.
description: The experiment was financed by the Research Council of Norway through grants 243812 (PETROMAKS2 project MOSIDEO) and 237906 (SFI CIRFA).
DOI: 10.21227/jzam-x081
title: Flooding of broadcast messages in FANET with fixed topologies

description: These are OMNeT++ flooding simulation results of four-UAV FANET in three different topologies (described in the article).
DOI: 10.5281/zenodo.3351667
title: MOSIDEO: Sea ice properties and oil concentrations measured during the HSVA experiment during MOSIDEO

description: Physical ice properties (porosity, permeability and brine volume fraction), and oil concentration measured on collected ice cores during the experiments. Oil concentrations are measured using a UV-fluorescence meter TD500TM (Turner Designs Hydrocarbon Instruments, Inc.) Ice temperature measured in-situ with thermocouple strings Porosity and permeability fields are computed from ice and temperature profiles using semi-empirical equations (Cox and Weeks, 1983; Golden et al., 2009). The oil intake and pore space saturation in oil (oil saturation) are derived from acoustic data of the oil/water and oil/ice interface position.
description: The experiment was financed by the Research Council of Norway through grants 243812 (PETROMAKS2 project MOSIDEO) and 237906 (SFI CIRFA).
DOI: 10.21227/2avk-0b23
title: Flooding of broadcast messages in FANET with fixed topologies

description: These are OMNeT++ flooding simulation results of four-UAV FANET in three different topologies, as mentioned in "The Broadcast Storm Problem in FANETs and the Dynamic Neighborhood-Based Algorithm as a Countermeasure".
DOI: 10.5061/dryad.hj627cr/1
title: Dryad Item 10.5061/DRYAD.HJ627CR/1

description: (:tba)
DOI: 10.5061/dryad.hj627cr/2
title: Dryad Item 10.5061/DRYAD.HJ627CR/2

description: (:tba)
DOI: 10.6073/pasta/20a22fcc73d2966f505a5be962331c31
title: PIE LTER trapping capacity of suspended cohesive sediments of subdomains at Plum Island Sound, Massachusetts (numerical simulations).

description: Trapping capacity of suspended cohesive sediments of subdomains at Plum Island Sound, Massachusetts (from numerical simulations) are predicted using 2D Delft3D FLOW/MOR model and vegetation module during different stages of tidal height and direction.
DOI: 10.25345/c58369
title: MassIVE MSV000084288 - GNPS Cyanobacteria Leptolyngbya and chemical networking
title: Environmental Sample of Leptolyngbya. Secondary metabolites from tropical marine Leptoyngbya.
DOI: 10.5061/dryad.78dj7t9/1
title: Dryad Item 10.5061/DRYAD.78DJ7T9/1

description: (:tba)
DOI: 10.5061/dryad.78dj7t9/2
title: Dryad Item 10.5061/DRYAD.78DJ7T9/2

description: (:tba)
DOI: 10.5061/dryad.78dj7t9/3
title: Dryad Item 10.5061/DRYAD.78DJ7T9/3

description: (:tba)
DOI: 10.15468/h29yba
title: Isoetes dubsii and Isoetes santacruzensis, two new species from lowland areas in South America

description: This dataset contains the digitized treatments in Plazi based on the original journal article Pereira, Jovani B. de S., Guimaraes, Jose Tasso F., Watanabe, Mauricio T. C. (2019): Isoetes dubsii and Isoetes santacruzensis, two new species from lowland areas in South America. PhytoKeys 131: 57-67, DOI: http://dx.doi.org/10.3897/phytokeys.131.36983, URL: http://dx.doi.org/10.3897/phytokeys.131.36983
DOI: 10.15468/vl4k7m
title: Bolbitis lianhuachihensis (Dryopteridaceae), a new species from Taiwan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Chao, Yi-Shan, Huang, Yu-Fang, Dong, Shi-Yong, Huang, Yao-Moan, Liu, Ho-Yih (2019): Bolbitis lianhuachihensis (Dryopteridaceae), a new species from Taiwan. PhytoKeys 131: 69-81, DOI: http://dx.doi.org/10.3897/phytokeys.131.36548, URL: http://dx.doi.org/10.3897/phytokeys.131.36548
DOI: 10.5061/dryad.nf481q8/1
title: Dryad Item 10.5061/DRYAD.NF481Q8/1

description: (:tba)
DOI: 10.5281/zenodo.3387773
title: DWD European Weather 2

description: opendata.dwd.de - OpenData by Deutscher Wetter Dienst Conditions: https://www.dwd.de/EN/service/copyright/copyright_node.html dates and times are UTC.
DOI: 10.5281/zenodo.3385376
title: Near Duplicate Study Crawls

description: Contains 3 parts GroundTruths contain the crawls used for creating SubjectSet SS.db RQ3Crawls contains all 5 minute and 30 minute crawls for all subjects used for RQ3 DS_Crawls contains 1065 crawls that was used to create dataset DS.db All the Crawls used for Near Duplicate Study. Each Crawl is done by crawljax with Google Chrome latest browser. Configuration includes the State Abstraction Function (SAF) used, threshold for the SAF and the time allotted for the crawl. The name of the folder contains all three configuration parameters. They can also be found from result.json as well as index.html.
DOI: 10.5281/zenodo.3385377
title: Near Duplicate Study Crawls

description: Contains 3 parts GroundTruths contain the crawls used for creating SubjectSet SS.db RQ3Crawls contains all 5 minute and 30 minute crawls for all subjects used for RQ3 DS_Crawls contains 1065 crawls that was used to create dataset DS.db All the Crawls used for Near Duplicate Study. Each Crawl is done by crawljax with Google Chrome latest browser. Configuration includes the State Abstraction Function (SAF) used, threshold for the SAF and the time allotted for the crawl. The name of the folder contains all three configuration parameters. They can also be found from result.json as well as index.html.
DOI: 10.5061/dryad.bn1sr05/1
title: Dryad Item 10.5061/DRYAD.BN1SR05/1

description: (:tba)
DOI: 10.5061/dryad.bn1sr05/2
title: Dryad Item 10.5061/DRYAD.BN1SR05/2

description: (:tba)
DOI: 10.5061/dryad.bn1sr05/3
title: Dryad Item 10.5061/DRYAD.BN1SR05/3

description: (:tba)
DOI: 10.5061/dryad.bn1sr05/4
title: Dryad Item 10.5061/DRYAD.BN1SR05/4

description: (:tba)
DOI: 10.5061/dryad.bn1sr05/5
title: Dryad Item 10.5061/DRYAD.BN1SR05/5

description: (:tba)
DOI: 10.5061/dryad.bn1sr05/6
title: Dryad Item 10.5061/DRYAD.BN1SR05/6

description: (:tba)
DOI: 10.5281/zenodo.3385374
title: ROMS-PISCES coupled implementation for the Marquesas (Run Biosope - Y5)

description: These data are the average outputs of the ROMS-PISCES implementation (Run Biosope) used in the paper: Raapoto et al. 2019 "Role of iron in the remarkable Marquesas island mass effect"