cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.zbadab
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monoraphidium Komárková-Legnerová, 1969",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((18.2339 -32.5266,18.1411 -32.657,18.1007 -32.7021,18.0224 -32.6366,17.8923 -32.6419,17.754 -32.8255,17.7723 -32.9007,20.509 -32.9007,20.509 -28.5786,16.2782 -28.5786,16.4358 -28.7202,16.726 -29.1235,17.1957 -30.3752,17.6655 -31.1743,18.1322 -31.7679,18.2495 -32.2638,18.2339 -32.5266))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060772-250525065834625/datasets/export for details.
DOI: 10.15468/dl.7m63yy
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus auranticavus Randall, 1956"
 ]
}

 The dataset includes 392 records from 40 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060774-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tcraq8
title: Occurrence Download

description: A dataset containing 5077 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Material sample)"
 ]
 }
 },
 "TaxonKey is Chlidonias niger (Linnaeus, 1758)",
 "Continent is one of (Africa)",
 "Year is greater than or equal to 1900"
 ]
}

 The dataset includes 5077 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060773-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/f7wd3xsf
title: Water samples in support of oceanographic and water-quality measurements in Chincoteague Bay, Maryland and Virginia, 2014-15, U.S. Geological Survey Field Activity 2014-048-FA

description: U.S. Geological Survey scientist and technical support staff measured oceanographic, water quality, seabed elevation change, and meteorological parameters in Chincoteague Bay, Maryland and Virginia, during the period of August 13, 2014 to July 14, 2015 as part of the Estuarine Physical Response (EPR) to Storms project (GS2-2D) supported by the Department of the Interior Hurricane Sandy Recovery program. These measurements provide time-series and supplemental data to quantify the response and understand the resilience of this back-barrier estuarine system to storm events. The Assateague Island National Seashore (U.S. National Park Service) and the Chincoteague National Wildlife Refuge (U.S. Fish and Wildlife Service) are both situated on the east side of Chincoteague Bay, and serve as the barrier between Chincoteague Bay and the Atlantic Ocean as well as providing globally important migratory bird habitat and a popular recreation destination.
DOI: 10.15468/dl.htg6zt
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monoraphidium Komárková-Legnerová, 1969",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.6372 -28.0032,16.2782 -28.5786,20.509 -28.5786,20.509 -24.0715,15.4933 -24.0715,15.4945 -24.1257,16.0509 -25.6631,15.6372 -28.0032))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060775-250525065834625/datasets/export for details.
DOI: 10.7910/dvn/kpyvi1
title: Code Contribution and Credit in Science

description: This dataset contains all data used and created as a part of the "Code Contribution and Credit in Science" article [TODO: link/doi to paper].&lt;br/&gt;
&lt;br/&gt;
There are six files in this dataset:&lt;br/&gt;
1. rs-graph-v1-prod.db&lt;br/&gt;
2. rs-graph-v1-redacted.db&lt;br/&gt;
3. annotated-dev-author-em-resolved.csv&lt;br/&gt;
4. train-set.parquet&lt;br/&gt;
5. test-set.parquet&lt;br/&gt;
6. dev-author-em-misclassifications.csv&lt;br/&gt;
&lt;br/&gt;
&lt;b&gt;rs-graph-v1-redacted.db&lt;/b&gt;
&lt;br/&gt;&lt;br/&gt;
The rs-graph-v1-redacted.db file is a SQLite database file that contains article-repository pairs. For each article, the basic bibliometric and author information is included. For each repository, only the basic repository metadata is included.&lt;br/&gt;
&lt;br/&gt;
For details as to how to load and access the data within this database, please review: &lt;a href="https://github.com/evamaxfield/rs-graph"&gt;https://github.com/evamaxfield/rs-graph&lt;/a&gt;&lt;br/&gt;
&lt;br/&gt;
&lt;b&gt;rs-graph-v1-prod.db&lt;/b&gt;&lt;br/&gt;
&lt;br/&gt;
The rs-graph-v1-prod.db file is a SQLite database file that contains the same basic data as the rs-graph-v1-redacted.db database file but additionally includes the repository contributor information for each repository along with each contributor's details as well as our predicted linkages between article authors and repository developers. This database file has restricted access due to it's creation of linked personally identifiable information.&lt;br/&gt;
&lt;br/&gt;
For details as to how to load and access the data within this database, please review: &lt;a href="https://github.com/evamaxfield/rs-graph"&gt;https://github.com/evamaxfield/rs-graph&lt;/a&gt;&lt;br/&gt;
&lt;br/&gt;
&lt;b&gt;annotated-dev-author-em-resolved.csv&lt;/b&gt;&lt;br/&gt;
&lt;br/&gt;
The annotated-dev-author-em-resolved.csv CSV file stores the annotations created by our team which were used to train our author-developer-account entity matching model. Like with the rs-graph-v1-prod.db, this data has restricted access due to it's creation of linked personally identifiable information.&lt;br/&gt;
&lt;br/&gt;
While the training data is kept private and available by request, we make the trained predictive model available at: &lt;a href="https://github.com/evamaxfield/sci-soft-models"&gt;https://github.com/evamaxfield/sci-soft-models&lt;/a&gt;

The train-set.parquet and test-set.parquet were the exact splits used for model training.

The dev-author-em-misclassifications.csv is the set of misclassifications from the model on the test-set.
DOI: 10.34740/kaggle/dsv/12231974
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.rdhka5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monoraphidium Komárková-Legnerová, 1969",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((15.4784 -23.4046,15.4933 -24.0715,20.509 -24.0715,20.509 -24.0455,20.0952 -23.5072,19.9968 -23.017,19.7843 -22.5405,19.1988 -21.8785,18.5972 -21.5447,17.8859 -21.3993,17.1626 -21.4805,16.5332 -21.7596,16.1257 -22.0882,15.8234 -22.4662,15.606 -22.8993,15.4784 -23.4046))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060776-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.15701828
title: MAMSI Supplementary Dataset

description: Supplementary dataset for the "MAMSI: Integration of multi-assay liquid chromatography – mass spectrometry metabolomics data using multi-view machine learning" publication.

This repository contains 3 dataset originating from 2 studies that were run at the UK National Phenome Centre (NPC). All of these datasets contain multi-assay metabolomics data: 

The AddNeuroMed study dataset was collected as part of the “European Collaboration for the Discovery of Novel Biomarkers for Alzheimer’s Disease (AD)” [1]. There are three LC-MS serum assays available: HILIC positive ionization assay (HILIC +), and lipidomic RPC positive ionization (Lipid RPC +) and negative ionization (Lipid RPC -) assays [2]. These data were converted to mzML format using ProteoWizard [3], pre-processed using XCMS [4] and nPYc toolbox [5] software resulting in 681, 4886 and 2091 features for HILIC +, lipid RPC +, and lipid RPC - respectively. A total of 577 subjects were available, 294 of those were female and 283 were male.

The MY DIABETES study [6] comprises individuals of White, South Asian and African-Caribbean ancestry, mostly diagnosed with type 1 diabetes under the age of 30. Three LC-MS serum assays are available: HILIC +, Lipid RPC + and Lipid RPC -, containing 613, 1771 and 907 features respectively. There are also three urine assays: HILIC +, and RPC for small molecule separation in both positive ionization (SmMol RPC +) and negative ionization (SmMol RPC +) containing 2600, 12817 and 7142 features respectively [2]. All assays were pre-processed using ProteoWizard, XCMS and the nPYc toolbox software. A total of 984 subjects were available in this study, 540 of those were female and 444 were male.

Table 1: National Phenome Centre LC-MS assay names and descriptions. 




NPC Assay Name
CSV File Name
Description


HILIC +
hpos
HILIC positive ionisation assay


Lipid RPC +
lpos
Lipidomic RPC  positive ionisation assay 


Lipid RPC -
lneg
Lipidomic RPC negative ionisation assay


SmMol RPC +
rpos
Small molecule separation positive ionisation assay


SmMol RPC +
rneg
Small molecule separation negative ionisation assay
DOI: 10.5281/zenodo.15701829
title: MAMSI Supplementary Dataset

description: Supplementary dataset for the "MAMSI: Integration of multi-assay liquid chromatography – mass spectrometry metabolomics data using multi-view machine learning" publication.

This repository contains 3 dataset originating from 2 studies that were run at the UK National Phenome Centre (NPC). All of these datasets contain multi-assay metabolomics data: 

The AddNeuroMed study dataset was collected as part of the “European Collaboration for the Discovery of Novel Biomarkers for Alzheimer’s Disease (AD)” [1]. There are three LC-MS serum assays available: HILIC positive ionization assay (HILIC +), and lipidomic RPC positive ionization (Lipid RPC +) and negative ionization (Lipid RPC -) assays [2]. These data were converted to mzML format using ProteoWizard [3], pre-processed using XCMS [4] and nPYc toolbox [5] software resulting in 681, 4886 and 2091 features for HILIC +, lipid RPC +, and lipid RPC - respectively. A total of 577 subjects were available, 294 of those were female and 283 were male.

The MY DIABETES study [6] comprises individuals of White, South Asian and African-Caribbean ancestry, mostly diagnosed with type 1 diabetes under the age of 30. Three LC-MS serum assays are available: HILIC +, Lipid RPC + and Lipid RPC -, containing 613, 1771 and 907 features respectively. There are also three urine assays: HILIC +, and RPC for small molecule separation in both positive ionization (SmMol RPC +) and negative ionization (SmMol RPC +) containing 2600, 12817 and 7142 features respectively [2]. All assays were pre-processed using ProteoWizard, XCMS and the nPYc toolbox software. A total of 984 subjects were available in this study, 540 of those were female and 444 were male.

Table 1: National Phenome Centre LC-MS assay names and descriptions. 




NPC Assay Name
CSV File Name
Description


HILIC +
hpos
HILIC positive ionisation assay


Lipid RPC +
lpos
Lipidomic RPC  positive ionisation assay 


Lipid RPC -
lneg
Lipidomic RPC negative ionisation assay


SmMol RPC +
rpos
Small molecule separation positive ionisation assay


SmMol RPC +
rneg
Small molecule separation negative ionisation assay
DOI: 10.15468/dl.gske3j
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monoraphidium Komárková-Legnerová, 1969",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -28.5786,20.509 -28.5786,20.509 -32.9007,25.5395 -32.9007,25.5395 -28.5786))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060778-250525065834625/datasets/export for details.
DOI: 10.5066/f7x929k6
title: High-resolution geophysical data collected along the Mississippi River Delta front offshore of southeastern Louisiana, U.S. Geological Survey Field Activity 2017-003-FA

description: High resolution bathymetric, sea-floor backscatter, and seismic-reflection data were collected offshore of southeastern Louisiana aboard the research vessel Point Sur on May 19-26, 2017, in an effort to characterize mudflow hazards on the Mississippi River Delta front. As the initial field program of a research cooperative between the U.S. Geological Survey, the Bureau of Ocean Energy Management, and other Federal and academic partners, the primary objective of this cruise was to assess the suitability of sea-floor mapping and shallow subsurface imaging tools in the challenging environmental conditions found across delta fronts (for example, variably distributed water column stratification and widespread biogenic gas in the shallow subsurface). Approximately 675 kilometers (km) of multibeam bathymetry and backscatter data, 420 km of towed chirp data, and 550 km of multichannel seismic data were collected. Varied mudflow (gully, lobe), prodelta morphologies, and structural features were imaged in selected survey areas from Pass a Loutre to Southwest Pass.
DOI: 10.15468/dl.upf2hn
title: Occurrence Download

description: A dataset containing 6720 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Acanthurus blochii Valenciennes, 1835"
 ]
}

 The dataset includes 6720 records from 100 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060777-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmyab6
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monoraphidium Komárková-Legnerová, 1969",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.7576 -24.3688,20.529 -24.0715,20.509 -24.0715,20.509 -28.5786,25.5395 -28.5786,25.5395 -24.0715,25.1306 -24.0715,24.9333 -24.4571,23.8962 -24.2467,22.8065 -24.295,22.3719 -24.7207,22.2323 -25.547,22.0387 -25.7188,21.7833 -25.7784,21.5388 -25.7113,21.3553 -25.5415,20.7576 -24.3688))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0060780-250525065834625/datasets/export for details.
DOI: 10.15468/dl.eknfto
title: Occurrence Download

description: A dataset containing 1145 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prionitis lanceolata"
 ]
}

 The dataset includes 1145 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008781-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2mguvy
title: Occurrence Download

description: A dataset containing 654933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alliaria petiolata (M.Bieb.) Cavara & Grande"
 ]
}

 The dataset includes 654933 records from 1974 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080043-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2vcly7
title: Occurrence Download

description: A dataset containing 10617 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Semele androgyna subsp. androgyna",
 "TaxonKey is Semele maderensis J.G.Costa",
 "TaxonKey is Senecio caespitosus Brot.",
 "TaxonKey is Senecio jacobaea L.",
 "TaxonKey is Senecio pyrenaicus subsp. caespitosus (Brot.) Franco",
 "TaxonKey is Serratula lycopifolia (Vill.) A.Kern.",
 "TaxonKey is Pinguicula mundi Blanca, Jamilena, Ruíz Rejón & R.Zamora",
 "TaxonKey is Tamarix canariensis Willd.",
 "TaxonKey is Euphorbia uliginosa Welw. ex Boiss.",
 "TaxonKey is Euphorbia briquetii Emb. & Maire",
 "TaxonKey is Euphorbia amygdaloides L.",
 "TaxonKey is Limonium barceloi Gil & L.Llorens",
 "TaxonKey is Limonium benmageci Marrero Rodr.",
 "TaxonKey is Limonium brassicifolium subsp. macropterum (Webb & Berthel.) G.Kunkel",
 "TaxonKey is Limonium carvalhoi Rosselló & L.Sáez",
 "TaxonKey is Limonium cordovillense Stübing & Cirujano",
 "TaxonKey is Limonium ejulabilis Rosselló, Mus & J.X.Soler",
 "TaxonKey is Limonium geronense Erben",
 "TaxonKey is Limonium grosii L.Llorens",
 "TaxonKey is Limonium inexpectans L.Sáez & Rosselló",
 "TaxonKey is Limonium leonardi-llorensii L.Sáez, Á.C.Carvalho & Rosselló",
 "TaxonKey is Limonium lobetanicum Erben",
 "TaxonKey is Limonium migjornense L.Llorens",
 "TaxonKey is Limonium pinillense R.Roselló & Peris",
 "TaxonKey is Limonium pseudodictyocladum (Pignatti) L.Llorens"
 ]
 }
 ]
}

 The dataset includes 10617 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009410-151016162008034/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nxmxq
title: Occurrence Download

description: A dataset containing 2545 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Taeniophyllum Blume"
 ]
}

 The dataset includes 2545 records from 89 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0248356-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wp3u8g
title: Occurrence Download

description: A dataset containing 2878 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Plantae",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Country is Germany",
 "DecimalLongitude is greater than or equal to 10.0150841180393",
 "DecimalLongitude is less than 10.0181436712237",
 "DecimalLatitude is greater than or equal to 47.27011",
 "DecimalLatitude is less than or equal to 55.05864"
 ]
}

 The dataset includes 2878 records from 24 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010050-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nrkgnm
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coryanthes senghasiana G.Gerlach"
 ]
}

 The dataset includes 7 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155604-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jochwl
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bostrychus sinensis Lacepède, 1801",
 "Country is India"
 ]
}

 The dataset includes 3 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009410-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.23ceqn
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eleocharis cordillerana S.González, Guagl. & Ruthsatz"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155603-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.r99hck
title: Occurrence Download

description: A dataset containing 88 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Arenga obtusifolia Mart."
 ]
}

 The dataset includes 88 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013347-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qxqa6
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Canada",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Tradescantia virginiana L."
 ]
}

 The dataset includes 91 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0244489-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.scrtb0
title: Occurrence Download

description: A dataset containing 78 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Taxonomic revision of the crab spider genus Epicadus Simon, 1895 (Arachnida: Araneae: Thomisidae) with notes on related genera of Stephanopinae Simon, 1895",
 "TaxonKey is Epicadus Simon, 1895"
 ]
}

 The dataset includes 78 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009410-170714134226665/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hgdzew
title: Occurrence Download

description: A dataset containing 96 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rabdosia lophanthoides (Buch.-Ham. ex D.Don) H.Hara"
 ]
}

 The dataset includes 96 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003523-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnbwwc
title: Occurrence Download

description: A dataset containing 119 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cuphea denticulata Kunth"
 ]
}

 The dataset includes 119 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155606-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.