cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/t8x96g88p3.1
title: Ultimate_Analysis

description: This database studies the performance inconsistency on the biomass HHV ultimate analysis. The research null hypothesis is the consistency in the rank of a biomass HHV model. Fifteen biomass models are trained and tested in four datasets. In each dataset, the rank invariability of these 15 models indicates the performance consistency. 

The database includes the datasets and source codes to analyze the performance consistency of the biomass HHV. These datasets are stored in tabular on an excel workbook. The source codes are the biomass HHV machine learning model through the MATLAB Objected Orient Program (OOP). These machine learning models consist of eight regressions, four supervised learnings, and three neural networks.

An excel workbook, "BiomassDataSetUltimate.xlsx," collects the research datasets in six worksheets. The first worksheet, "Ultimate," contains 908 HHV data from 20 pieces of literature. The names of the worksheet column indicate the elements of the ultimate analysis on a % dry basis. The HHV column refers to the higher heating value in MJ/kg. The following worksheet, "Full Residuals," backups the model testing's residuals based on the 20-fold cross-validations. The article (Kijkarncharoensin & Innet, 2021) verifies the performance consistency through these residuals. The other worksheets present the literature datasets implemented to train and test the model performance in many pieces of literature.

A file named "SourceCodeUltimate.rar" collects the MATLAB machine learning models implemented in the article. The list of the folders in this file is the class structure of the machine learning models. These classes extend the features of the original MATLAB's Statistics and Machine Learning Toolbox to support, e.g., the k-fold cross-validation. The MATLAB script, name "runStudyUltimate.m," is the article's main program to analyze the performance consistency of the biomass HHV model through the ultimate analysis. The script instantly loads the datasets from the excel workbook and automatically fits the biomass model through the OOP classes.

The first section of the MATLAB script generates the most accurate model by optimizing the model's higher parameters. It takes a few hours for the first run to train the machine learning model via the trial and error process. The trained models can be saved in MATLAB .mat file and loaded back to the MATLAB workspace. The remaining script, separated by the script section break, performs the residual analysis to inspect the performance consistency. Furthermore, the figure of the biomass data in the 3D scatter plot, and the box plots of the prediction residuals are exhibited. Finally, the interpretations of these results are examined in the author's article.

Reference :
Kijkarncharoensin, A., & Innet, S. (2021). The Performance Inconsistency of the Biomass Higher Heating Value (HHV) Models: The Ultimate Analysis [Manuscript in preparation]. University of the Thai Chamber of Commerce.
DOI: 10.17632/6xccty499y.1
title: Minimally-invasive Microbiopsy for Genetic Profiling of Melanocytic Lesions: A Case Series

description: Supplementary Table 1: Genetic, phenotypic, and histopathologic assessment of clinical unequivocal nevi
DOI: 10.17632/fmb2fwb53f.1
title: GutierrezBarragan_CB2021_medIso_rsfMRI_mouse

description: Resting state fMRI data from n=14 mice under medetomidine-isoflurane anesthesia (0.05 mg/kg bolus and 0.1 mg/kg/h IV infusion, plus 0.5% isoflurane) from Gutierrez-Barragan et al. 2021  (DOI pending). Scans were acquired at the IIT laboratory in Rovereto (Italy) on a 7.0 Tesla MRI scanner (Bruker Biospin, Ettlingen) with a BGA-9 gradient set, a 72 mm birdcage transmit coil, and a three-channel  solenoid receive coil. Awake scans used a single-shot echo planar imaging (EPI) sequence with the following parameters: TR/TE=1000/15 ms, flip angle=60°, matrix=100 x 100, FOV=2.3 x 2.3 cm, 18 coronal slices (voxel-size 230 x 230 x 600 µm), slice thickness=600 µm and 1920 time points, for a total time of 32 minutes.  It is suggested to remove the first 120 scans (2 minutes) to account for thermal gradient equilibration.
DOI: 10.17632/fszkvgg56j.1
title: Personalized production, non-genomic engineering, and time-resolved proteomics of therapeutic phages for biohazardous and multidrug-resistant bacteria

description: masurca.config => assembly config file

p3.blastvog.enhanced.3.embl => final assembly of P3 phage with annotation (embl-file format - *not* genbank!)

p3.comp.pdf|png => genome duplication analysis

p3.guppy.fastq.gz => MinION reads
p3.noecoli.guppy.fastq.gz => MinION reads (E. coli reads removed)

p3.r.1|2.fq.gz => trimmed/E. coli removed reads from Illumina sequencing

P3_S2* => original Illumina reads
DOI: 10.5281/zenodo.5770628
title: Replication Archive for "Chaos Before Order: Productivity Patterns in U.S. Manufacturing"

description: This archive includes the public-use data and STATA code to replicate the analyses based on the public-use data in the referenced paper.
DOI: 10.5281/zenodo.5770627
title: Replication Archive for "Chaos Before Order: Productivity Patterns in U.S. Manufacturing"

description: This archive includes the public-use data and STATA code to replicate the analyses based on the public-use data in the referenced paper.
DOI: 10.15468/wnpksx
title: Novelties from the Northern Mountains Complex of Madagascar IV: A new Rinorea Aubl. (Violaceae) of restricted range from the Galoko and Kalabinono massifs

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wahlert, Gregory A. (2016): Novelties from the Northern Mountains Complex of Madagascar IV: A new Rinorea Aubl. (Violaceae) of restricted range from the Galoko and Kalabinono massifs. Candollea 71 (2): 205-210, DOI: 10.15553/c2016v712a6
DOI: 10.6073/pasta/cb319524d30feed3a229aea37c9fc950
title: StreamFRE-Shrimp assemblages in Prieta Stream
DOI: 10.25919/njvv-5481
title: Parkes observations for project P1134 semester 2021OCTS_03

description: We propose timing and broadband follow-up observations of an intermittent pulsar candidate that has emerged from our ongoing processing of the SMART survey data. Initial analysis suggests the possibility of it being either an extreme nuller, or possibly an intermittent (state-switching) pulsar, of which only a handful are currently known. These rare type of pulsars continue to pose challenges in our quest to uncover the elusive emission mechanism. The proposed observations will help further elucidate the intermittent nature and its frequency dependence, and will allow us to determine the pulsar's spin and astrometric parameters via regular timing observations. We will also undertake polarimetric analysis to further explore the emission properties, and to determine the pulsar's emission geometry.
DOI: 10.25919/fb5d-qn54
title: Parkes observations for project PX600 semester 2020APRS_56

description: The Galactic Center (GC) is a key target for the radio component of Breakthrough Listen (BL) program. Offering the largest amount of stars in any given direction in the sky, the GC is widely cited as a location believed to harbour advanced civilizations, and it is also the most energetic region in the Milky Way. We aim to conduct BL-GC Survey with Parkes radio telescope for around 350 hours. We will cover the frequency range from 700 MHz to 4 GHz, utilizing the newly installed ultra-wideband receiver. Our team has already leveraged both standard and bespoke tools to construct a flexible software stack to search data for signals of interest. We will look for signals from extraterrestrial intelligence (ETI) by searching for both simple narrow-band signals and complex modulated signals. Along with that, as an ancillary science, we will also search for accelerated pulsars — likely orbiting a supermassive black hole at the centre of the Milky Way Galaxy. Data products produced during this program will also be publically available to engage larger pulsar community
DOI: 10.25318/3210022701-eng
title: Experimental hog estimates using PigTRACE data, supply, disposition, and ending inventories of hogs, semi-annual

description: Hogs statistics, supply and disposition of hogs and number of hogs on farms at the end of semi-annual period, Canada and provinces (head x 1,000). Experimental hogs estimates using PigTRACE data.
DOI: 10.25318/3210022701-fra
title: Estimations expérimentales de porcs fondées sur les données de PorcTRACÉ, disponibilité, écoulement et stocks de fermeture des porcs, semi-annuel

description: Statistiques de porcs, disponibilité et écoulement des porcs et nombre de porcs dans les fermes à la fin d'une période semestrielle, Canada et les provinces (tête x 1 000). Estimations expérimentales de porcs utilisant les données de PorcTRACÉ.
DOI: 10.15468/cdhg6h
title: Novitates neocaledonicae V: Eugenia plurinervia N. Snow, Munzinger & Callm. (Myrtaceae), a new threatened species with distinct leaves

description: This dataset contains the digitized treatments in Plazi based on the original journal article Snow, Neil, Munzinger, Jérôme, Callmander, Martin W. (2016): Novitates neocaledonicae V: Eugenia plurinervia N. Snow, Munzinger & Callm. (Myrtaceae), a new threatened species with distinct leaves. Candollea 71 (2): 211-215, DOI: 10.15553/c2016v712a7
DOI: 10.5281/zenodo.5773072
title: Interactions between breeding system and ploidy affect niche breadth in Solanum

description: As climate changes understanding what drives the way plants evolve to exist in new ecological niches becomes increasingly important. Here we find that in Solanum section Petota that specific breeding system and ploidy combinations increase niche divergence through the decoupling of geographical range and niche diversity. This allows for more targeted use for plant breeding and plant conservation. This is the data and code associated with the manuscript that describes these results.
DOI: 10.5281/zenodo.5773071
title: Interactions between breeding system and ploidy affect niche breadth in Solanum

description: As climate changes understanding what drives the way plants evolve to exist in new ecological niches becomes increasingly important. Here we find that in Solanum section Petota that specific breeding system and ploidy combinations increase niche divergence through the decoupling of geographical range and niche diversity. This allows for more targeted use for plant breeding and plant conservation. This is the data and code associated with the manuscript that describes these results.
DOI: 10.14272/hqtdeljachuane-uhfffaoysa-n/chmo0000470
title: mass spectrometry (MS) (N-[4,5-dibromo-2-[(4-methylphenyl)sulfonylamino]phenyl]-4-methylbenzenesulfonamide)
title: InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3

description: dataset for mass spectrometry (MS) MS (FAB, 3-NBA), m/z (%) : 607 (52), 577 (14), 576/574 (15/18) [M+H]+, 575/573 (24/13) [M]+, 421 (11), 419 (19), 307 (31), 289 (18), 265 (17), 217 (11), 155 (42), 154 (100), 152 (10), 139 (23), 138 (33), 137 (55), 136 (74), 120 (12), 107 (23), 91 (35), 90 (18), 89 (21)HRMS–FAB (m/z): [M + H]+ calcd for C20H1904N279Br232S2 572.9074; found 572.9068.
DOI: 10.14272/hqtdeljachuane-uhfffaoysa-n/chmo0000630
title: infrared absorption spectroscopy (IR) (N-[4,5-dibromo-2-[(4-methylphenyl)sulfonylamino]phenyl]-4-methylbenzenesulfonamide)
title: InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3

description: dataset for infrared absorption spectroscopy (IR) IR (ATR, ṽ) = 3252, 3214, 1776, 1596, 1561, 1493, 1465, 1422, 1388, 1358, 1333, 1317, 1305, 1290, 1264, 1248, 1238, 1214, 1186, 1159, 1143, 1116, 1088, 1038, 1017, 941, 898, 866, 854, 846, 834, 807, 720, 707, 674, 663, 633, 612, 588, 564, 545, 534, 521, 480, 462, 456, 436, 419, 404, 398, 378 cm–1.
DOI: 10.14272/hqtdeljachuane-uhfffaoysa-n.1
title: N-[4,5-dibromo-2-(tosylamino)phenyl]-4-methyl-benzenesulfonamide
title: InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3

description: This dataset contains experimental data from a sample (N-[4,5-dibromo-2-[(4-methylphenyl)sulfonylamino]phenyl]-4-methylbenzenesulfonamide, InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3). The datasets from the following experiments are available: 1H nuclear magnetic resonance spectroscopy (1H NMR) 13C nuclear magnetic resonance spectroscopy (13C NMR) infrared absorption spectroscopy (IR) mass spectrometry (MS)
DOI: 10.14272/hqtdeljachuane-uhfffaoysa-n/chmo0000593
title: 1H nuclear magnetic resonance spectroscopy (1H NMR) (N-[4,5-dibromo-2-[(4-methylphenyl)sulfonylamino]phenyl]-4-methylbenzenesulfonamide)
title: InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3

description: dataset for 1H nuclear magnetic resonance spectroscopy (1H NMR) 1H NMR (400 MHz, DMSO-d6 [2.50 ppm], ppm) : 2.37 (s, 6H, CH3), 7.27 (s, 2H, HAr), 7.35–7.42 (m, 4H, HAr), 7.55–7.64 (m, 4H, HAr), 9.62 (bs, 2H, NH). Impurities : 3.34 ppm (Water), 5.75 ppm (methylene chloride).
DOI: 10.14272/hqtdeljachuane-uhfffaoysa-n/chmo0000595
title: 13C nuclear magnetic resonance spectroscopy (13C NMR) (N-[4,5-dibromo-2-[(4-methylphenyl)sulfonylamino]phenyl]-4-methylbenzenesulfonamide)
title: InChI=1S/C20H18Br2N2O4S2/c1-13-3-7-15(8-4-13)29(25,26)23-19-11-17(21)18(22)12-20(19)24-30(27,28)16-9-5-14(2)6-10-16/h3-12,23-24H,1-2H3

description: dataset for 13C nuclear magnetic resonance spectroscopy (13C NMR) 13C NMR (101 MHz, DMSO-d6 [39.51 ppm], ppm) : 21.0 (2C, CH3), 119.5 (2C, Cq), 126.7 (2C, CH), 126.9 (4C, CH), 129.9 (4C, CH), 130.0 (2C, Cq), 135.6 (2C, Cq), 144.1 (2C, Cq).
DOI: 10.5281/zenodo.5732487
title: All NDD candidates HUG Leipzig

description: This is a list of candidate genes, downloaded on November 16th 2021 from https://www.uniklinikum-leipzig.de/einrichtungen/humangenetik/Freigegebene%20Dokumente/Forschung_candidate-scores.pdf
DOI: 10.5281/zenodo.5732486
title: All NDD candidates HUG Leipzig

description: This is a list of candidate genes, downloaded on November 16th 2021 from https://www.uniklinikum-leipzig.de/einrichtungen/humangenetik/Freigegebene%20Dokumente/Forschung_candidate-scores.pdf
DOI: 10.6084/m9.figshare.17126738
title: Montevideo Garbage Containers

description: This dataset represents the location of the garbage containers in the city of Montevideo (Uruguay) and time/distance cost matrix for travelling from one container to another in the city.The start point files have the time and distance cost of travelling from a container to Montevideo's main garbage dumpsite: Vertedero Felipe Cardozo.<br>The coordinates of the garbage containers has been obtained through the open dataset https://catalogodatos.gub.uy/dataset/intendencia-montevideo-contenedores-de-residuos-domiciliarios-ubicacion. Which is licensed by<i> Licencia de DAG de Uruguay</i>.<br>The distance/time cost matrix has been computed using the Graphhopper routing engine (https://www.graphhopper.com/).
DOI: 10.34974/wtbx-0r84
title: gREST_SSCR simulation of trimeric SARS-CoV-2 Spike protein starting from Down conformation
DOI: 10.3886/e143141v1-104200
title: The Influence of Gut Bacteria on Anxiety Behaviors in Rodents: Implication for Mental Health in Humans

description: Using an animal paradigm, with rodents, we investigated whether a probiotic formulation—containing two strains of bifidobacteria and lactobacilli—might have anxiety-reducing effects. We administered the probiotic to an experimental group of rats (n = 10), which we compared to a placebo control group of rats (n = 10) to evaluate differences in anxiety behaviors. We assessed the animals’ anxiety behaviors using the Elevated Plus Maze (EPM) test and a fecal count on the EPM. More entries and a greater length of time on the open arms of the EPM, as well as fewer fecal pellets, reflect less anxiety. We ran an independent samples t-test and Poisson regression analyses to compare means between groups for anxiety behaviors. Our results indicate that the probiotics had anxiety-reducing effects, with statistical significance. This research supports evidence of a connection between certain gut bacteria and mental health, and it adds to the catalog of bacteria that could potentially improve mental health.<br><br>
DOI: 10.34974/xn67-xk26
title: gREST_SSCR simulation of trimeric SARS-CoV-2 Spike protein starting from 1Up conformation
DOI: 10.6084/m9.figshare.17161106.v1
title: Supplemental Tables.pdf

description: Glucocorticoid target genes that are altered in the skeletal muscle in response to acute aerobic exercise in the light or dark cycles of mice.
DOI: 10.6084/m9.figshare.17161106
title: Supplemental Tables.pdf

description: Glucocorticoid target genes that are altered in the skeletal muscle in response to acute aerobic exercise in the light or dark cycles of mice.
DOI: 10.5517/ccdc.csd.cc28hz92
title: CCDC 2100724: Experimental Crystal Structure Determination

description: Related Article: Brian J. Eckstein, Loren C. Brown, Bruce C. Noll, Michael P. Moghadasnia, Gary J. Balaich, C. Michael McGuirk|2021|J.Am.Chem.Soc.|143|20207|doi:10.1021/jacs.1c08642
DOI: 10.5517/ccdc.csd.cc28j02x
title: CCDC 2100748: Experimental Crystal Structure Determination

description: Related Article: Xinhong Li, Chunhui Jiang, Xiao Wang, Jie Ren, Tianlong Zeng, Xiufang Xu, Jing Li, Lingyan Liu|2021|J.Org.Chem.|86|16614|doi:10.1021/acs.joc.1c01913
DOI: 10.5517/ccdc.csd.cc28kstg
title: CCDC 2102476: Experimental Crystal Structure Determination

description: Related Article: Matilda Duffy, Mara Di Filippo, Marcus Baumann|2021|Tetrahedron Lett.|86|153522|doi:10.1016/j.tetlet.2021.153522
DOI: 10.5517/ccdc.csd.cc28ksvh
title: CCDC 2102477: Experimental Crystal Structure Determination

description: Related Article: Matilda Duffy, Mara Di Filippo, Marcus Baumann|2021|Tetrahedron Lett.|86|153522|doi:10.1016/j.tetlet.2021.153522
DOI: 10.5517/ccdc.csd.cc28m266
title: CCDC 2103697: Experimental Crystal Structure Determination

description: Related Article: Jia-Rui Wu, Zhi Cai, Gengxin Wu, Dihua Dai, Yu-Qing Liu, Ying-Wei Yang|2021|J.Am.Chem.Soc.|143|20395|doi:10.1021/jacs.1c10139
DOI: 10.5517/ccdc.csd.cc28m2cc
title: CCDC 2103702: Experimental Crystal Structure Determination

description: Related Article: Jia-Rui Wu, Zhi Cai, Gengxin Wu, Dihua Dai, Yu-Qing Liu, Ying-Wei Yang|2021|J.Am.Chem.Soc.|143|20395|doi:10.1021/jacs.1c10139
DOI: 10.5517/ccdc.csd.cc28m2dd
title: CCDC 2103703: Experimental Crystal Structure Determination

description: Related Article: Jia-Rui Wu, Zhi Cai, Gengxin Wu, Dihua Dai, Yu-Qing Liu, Ying-Wei Yang|2021|J.Am.Chem.Soc.|143|20395|doi:10.1021/jacs.1c10139
DOI: 10.5517/ccdc.csd.cc28m2yy
title: CCDC 2103720: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc27mlr7
title: CCDC 2074419: Experimental Crystal Structure Determination

description: Related Article: dan  dan ba|2021|CSD Communication|||
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DOI: 10.5517/ccdc.csd.cc28p7t1
title: CCDC 2105793: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Naohiro Uemura, Takumi Nakamura, Yasushi Yoshida, Takashi Mino|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28p7v2
title: CCDC 2105794: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Naohiro Uemura, Takumi Nakamura, Yasushi Yoshida, Takashi Mino|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28p7w3
title: CCDC 2105795: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Naohiro Uemura, Takumi Nakamura, Yasushi Yoshida, Takashi Mino|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28p7x4
title: CCDC 2105796: Experimental Crystal Structure Determination

description: Related Article: Masami Sakamoto, Naohiro Uemura, Takumi Nakamura, Yasushi Yoshida, Takashi Mino|2021|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc28pghy
title: CCDC 2106000: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p7y5
title: CCDC 2105797: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p7z6
title: CCDC 2105798: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p808
title: CCDC 2105799: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p82b
title: CCDC 2105801: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p83c
title: CCDC 2105802: Experimental Crystal Structure Determination

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DOI: 10.5517/ccdc.csd.cc28p84d
title: CCDC 2105803: Experimental Crystal Structure Determination

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DOI: 10.5281/zenodo.5770458
title: Daily Caloric Restriction and Intermittent Fasting in Overweight and Obese Adults With Autosomal Dominant Polycystic Kidney Disease

description: These databases are from the pilot clinical trial, Daily Caloric Restriction and Intermittent Fasting in Overweight and Obese Adults With Autosomal Dominant Polycystic Kidney Disease. This study determined the feasibility of delivering two behavioral weight loss interventions for 1 year in adults with autosomal dominant polycystic kidney disease (ADPKD) who were overweight or obese. The study also compared these two interventions in terms of safety, acceptability, and tolerability. Last, the trial will provided initial insight into a) biological changes and b) changes in kidney growth with each of the two weight loss interventions. The main data are provided as a SAS files (with data dictionaries), with adherence data as a SPSS file. The data are available to qualified individuals within the scientific community who apply for data use directly with the lead contact.
DOI: 10.5281/zenodo.5770457
title: Daily Caloric Restriction and Intermittent Fasting in Overweight and Obese Adults With Autosomal Dominant Polycystic Kidney Disease

description: These databases are from the pilot clinical trial, Daily Caloric Restriction and Intermittent Fasting in Overweight and Obese Adults With Autosomal Dominant Polycystic Kidney Disease. This study determined the feasibility of delivering two behavioral weight loss interventions for 1 year in adults with autosomal dominant polycystic kidney disease (ADPKD) who were overweight or obese. The study also compared these two interventions in terms of safety, acceptability, and tolerability. Last, the trial will provided initial insight into a) biological changes and b) changes in kidney growth with each of the two weight loss interventions. The main data are provided as a SAS files (with data dictionaries), with adherence data as a SPSS file. The data are available to qualified individuals within the scientific community who apply for data use directly with the lead contact.