cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.n3kwct
title: Occurrence Download

description: A dataset containing 426 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octoknema borealis Hutch. & Dalziel"
 ]
}

 The dataset includes 426 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058014-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25511479
title: Figure 3 Raw Data - 2022-10-30 - 1720

description: 2022-10-30 031432 S PH 50x25um-1720cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.6084/m9.figshare.25511479.v1
title: Figure 3 Raw Data - 2022-10-30 - 1720

description: 2022-10-30 031432 S PH 50x25um-1720cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.15468/dl.kn6pkm
title: Occurrence Download

description: A dataset containing 67 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neoalsomitra schefferiana (Cogn.) Hutch."
 ]
}

 The dataset includes 67 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058015-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hj7vqt
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Momordica calantha Gilg"
 ]
}

 The dataset includes 92 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058016-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xqrb8d
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octoknema chailluensis Malécot & Gosline"
 ]
}

 The dataset includes 43 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058017-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9udtcj
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari bourgaei Baker"
 ]
}

 The dataset includes 66 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058018-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgpt4e
title: Occurrence Download

description: A dataset containing 77407 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lophocolea bidentata (L.) Dumort."
 ]
}

 The dataset includes 77407 records from 509 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057381-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.df4sy3
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Momordica camerounensis Keraudren"
 ]
}

 The dataset includes 18 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058019-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uncaca
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neoalsomitra schultzei (Cogn.) Hutch."
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058020-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5a3csb
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octoknema dinklagei Engl."
 ]
}

 The dataset includes 74 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058021-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8bjqtr
title: Occurrence Download

description: A dataset containing 136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari caucasicum (Griseb.) Baker"
 ]
}

 The dataset includes 136 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058022-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.84ahwv
title: Occurrence Download

description: A dataset containing 158 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Momordica cardiospermoides Klotzsch"
 ]
}

 The dataset includes 158 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058023-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.25511482
title: Figure 3 Raw Data Images - 2022-10-30 - 1720

description: Images and screenshot2022-10-30 031432 S PH 50x25um-1720cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.6084/m9.figshare.25511482.v1
title: Figure 3 Raw Data Images - 2022-10-30 - 1720

description: Images and screenshot2022-10-30 031432 S PH 50x25um-1720cm-1 2mW-TA 87nm-hBNonRuCl-nanspecdata
DOI: 10.15468/dl.sqqazy
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Neoalsomitra simplex (Craib) Hutch."
 ]
}

 The dataset includes 9 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058024-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mrdfvx
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Octoknema genovefae Villiers"
 ]
}

 The dataset includes 52 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058025-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10895915
title: peronia_verruculata_spades_01.fasta.gz

description: .
DOI: 10.5281/zenodo.10895916
title: peronia_verruculata_spades_01.fasta.gz

description: .
DOI: 10.15468/dl.hx4s9g
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Muscari cazorlanum C.Soriano, Rivas Ponce, R.Lozano & Ruíz Rejón"
 ]
}

 The dataset includes 14 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058026-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.knsrqs
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is BRA.23_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Cyrtopodium R.Br."
 ]
}

 The dataset includes 18 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058028-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.55rr3f
title: Occurrence Download

description: A dataset containing 21341 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Momordica charantia L."
 ]
}

 The dataset includes 21341 records from 644 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058027-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.1234088.v1
title: Compare the abundance of insects in grassland at day and night

description: Experiment is to colleting the abundance of insects in grassland at day and night respectively. Experiment is took place in grassland where near the Stong Pond, York University and conducted for one week . 15 pitfall traps were set every 5 meters, and the data was collected twice one day at 8:00am and 8:00pm respectively.
DOI: 10.6084/m9.figshare.1234082
title: Gaussian Job Archive for C5H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1234089.v1
title: Dataset for pone

description: Relational diversity promotes cooperation in prisoner's dilemma games
DOI: 10.6084/m9.figshare.1234082.v1
title: Gaussian Job Archive for C5H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1234079
title: Seven new species of <i>Oculatella</i> (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification

description: A total of 27 strains of <i>Oculatella</i> were isolated, characterized and sequenced, and analysed phylogenetically with an additional environmental clone from the Atacama Desert and 10 strains isolated and sequenced by others. The strains were clearly separated based upon phylogenetic analyses conducted with a concatenated alignment of the 16S rRNA and 16S-23S ITS region of the ribosomal operons in the genus <i>Oculatella</i>. Differences in secondary structure of the conserved domains of the ITS region, as well as comparative analysis of P-distance among ITS regions, served to separate the strains into distinct taxonomic units. Seven new species of <i>Oculatella</i> were described, including four from arid to semi-arid soils (<i>O. atacamensis, O. mojaviensis, O. coburnii, O. neakameniensis</i>) and three from more mesic habitats, including a temperate lake (<i>O. hafneriensis</i>), a desert waterfall (<i>O. cataractarum</i>) and a Hawaiian sea cave (<i>O. kauaiensis</i>). The soil forms show statistically significant morphological differences, but the ranges overlap to a degree that they are not diagnosable by morphology, and these four cryptic species are characterized here using molecular characters. The more mesic species, including the type species from Mediterranean hypogea, <i>O. subterranea</i>, are all morphologically distinct from each other and from all four soil taxa. This report is the first to use solely molecular criteria to distinguish cryptic species of cyanobacteria.
DOI: 10.6084/m9.figshare.1234068
title: Correlation between plant height and distance from power line

description: This experimental design concentrates on the affects of electromagnetic fields on plant growth. To be specific, the plant height of Golden Rods, White/purple Asters and Queen Anne Laces were averaged together at increments of distances from a power line. This was done on a power line field where power towers were selected randomly. Four quadrats were used to measure various plant heights at each origin of each week. At each origin the number quadrats were measured in both north and south direction. This process was replicated in a duration of three weeks. The computed values were analyzed to determine any correlation between the two variables studied. .
DOI: 10.6084/m9.figshare.1234089.v2
title: Dataset for plos one

description: These are the two social network datasets for the accepted manuscript titled "Relational diversity promotes cooperation in prisoner's dilemma games" in Plos One. All datasets are collected from Facebook.com.
DOI: 10.6084/m9.figshare.1234052
title: Data publication survey - raw data

description: Raw data from NPG data publication survey.
DOI: 10.6084/m9.figshare.1234068.v1
title: Correlation between plant height and distance from power line

description: This experimental design concentrates on the affects of electromagnetic fields on plant growth. To be specific, the plant height of Golden Rods, White/purple Asters and Queen Anne Laces were averaged together at increments of distances from a power line. This was done on a power line field where power towers were selected randomly. Four quadrats were used to measure various plant heights at each origin of each week. At each origin the number quadrats were measured in both north and south direction. This process was replicated in a duration of three weeks. The computed values were analyzed to determine any correlation between the two variables studied. .
DOI: 10.6084/m9.figshare.1234052.v1
title: Data publication survey - raw data

description: Raw data from NPG data publication survey.
DOI: 10.6084/m9.figshare.1234027
title: Earliest known European mammals: a review of the Morganucodonta from Saint-Nicolas-de-Port (Upper Triassic, France)

description: The Rhaetian locality of Saint-Nicolas-de-Port (France) has yielded the most abundant and diverse mammalian assemblage known from the Late Triassic. Most of the material remains undescribed. We review here the morganucodonts from Saint-Nicolas-de-Port. We identify the upper and lower molariforms of the genus <i>Brachyzostrodon</i>. We also identify in the site <i>Morganucodon peyeri</i>, previously known from the Late Triassic of Hallau (Switzerland), as well as the genera <i>Paceyodon</i> and <i>Paikasigudodon</i>. The description of the new species <i>Megazostrodon chenali</i> sp. nov. extends the stratigraphical and geographical range of the genus, previously known from the Early Jurassic of southern Africa. Finally, another new morganucodont, <i>Rosierodon anceps</i> gen. et sp. nov., is described. The Morganucodonta is recognized as the most diverse order of Late Triassic mammals. Current fossil data suggest that Europe was the centre of initial diversification of morganucodonts at the end of the Triassic, and that morganucodonts were not much affected by the extinction event at the Triassic/Jurassic transition.http://zoobank.org/urn:lsid:zoobank.org:pub:0D30F723-7D65-49B7-8375-BF916BFA0BBA
DOI: 10.6084/m9.figshare.1234079.v1
title: Seven new species of <i>Oculatella</i> (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification

description: A total of 27 strains of <i>Oculatella</i> were isolated, characterized and sequenced, and analysed phylogenetically with an additional environmental clone from the Atacama Desert and 10 strains isolated and sequenced by others. The strains were clearly separated based upon phylogenetic analyses conducted with a concatenated alignment of the 16S rRNA and 16S-23S ITS region of the ribosomal operons in the genus <i>Oculatella</i>. Differences in secondary structure of the conserved domains of the ITS region, as well as comparative analysis of P-distance among ITS regions, served to separate the strains into distinct taxonomic units. Seven new species of <i>Oculatella</i> were described, including four from arid to semi-arid soils (<i>O. atacamensis, O. mojaviensis, O. coburnii, O. neakameniensis</i>) and three from more mesic habitats, including a temperate lake (<i>O. hafneriensis</i>), a desert waterfall (<i>O. cataractarum</i>) and a Hawaiian sea cave (<i>O. kauaiensis</i>). The soil forms show statistically significant morphological differences, but the ranges overlap to a degree that they are not diagnosable by morphology, and these four cryptic species are characterized here using molecular characters. The more mesic species, including the type species from Mediterranean hypogea, <i>O. subterranea</i>, are all morphologically distinct from each other and from all four soil taxa. This report is the first to use solely molecular criteria to distinguish cryptic species of cyanobacteria.
DOI: 10.6084/m9.figshare.1234079.v3
title: Seven new species of <i>Oculatella</i> (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification

description: A total of 27 strains of <i>Oculatella</i> were isolated, characterized and sequenced, and analysed phylogenetically with an additional environmental clone from the Atacama Desert and 10 strains isolated and sequenced by others. The strains were clearly separated based upon phylogenetic analyses conducted with a concatenated alignment of the 16S rRNA and 16S-23S ITS region of the ribosomal operons in the genus <i>Oculatella</i>. Differences in secondary structure of the conserved domains of the ITS region, as well as comparative analysis of P-distance among ITS regions, served to separate the strains into distinct taxonomic units. Seven new species of <i>Oculatella</i> were described, including four from arid to semi-arid soils (<i>O. atacamensis, O. mojaviensis, O. coburnii, O. neakameniensis</i>) and three from more mesic habitats, including a temperate lake (<i>O. hafneriensis</i>), a desert waterfall (<i>O. cataractarum</i>) and a Hawaiian sea cave (<i>O. kauaiensis</i>). The soil forms show statistically significant morphological differences, but the ranges overlap to a degree that they are not diagnosable by morphology, and these four cryptic species are characterized here using molecular characters. The more mesic species, including the type species from Mediterranean hypogea, <i>O. subterranea</i>, are all morphologically distinct from each other and from all four soil taxa. This report is the first to use solely molecular criteria to distinguish cryptic species of cyanobacteria.
DOI: 10.6084/m9.figshare.1234079.v2
title: Seven new species of <i>Oculatella</i> (Pseudanabaenales, Cyanobacteria): taxonomically recognizing cryptic diversification

description: A total of 27 strains of <i>Oculatella</i> were isolated, characterized and sequenced, and analysed phylogenetically with an additional environmental clone from the Atacama Desert and 10 strains isolated and sequenced by others. The strains were clearly separated based upon phylogenetic analyses conducted with a concatenated alignment of the 16S rRNA and 16S-23S ITS region of the ribosomal operons in the genus <i>Oculatella</i>. Differences in secondary structure of the conserved domains of the ITS region, as well as comparative analysis of P-distance among ITS regions, served to separate the strains into distinct taxonomic units. Seven new species of <i>Oculatella</i> were described, including four from arid to semi-arid soils (<i>O. atacamensis, O. mojaviensis, O. coburnii, O. neakameniensis</i>) and three from more mesic habitats, including a temperate lake (<i>O. hafneriensis</i>), a desert waterfall (<i>O. cataractarum</i>) and a Hawaiian sea cave (<i>O. kauaiensis</i>). The soil forms show statistically significant morphological differences, but the ranges overlap to a degree that they are not diagnosable by morphology, and these four cryptic species are characterized here using molecular characters. The more mesic species, including the type species from Mediterranean hypogea, <i>O. subterranea</i>, are all morphologically distinct from each other and from all four soil taxa. This report is the first to use solely molecular criteria to distinguish cryptic species of cyanobacteria.
DOI: 10.6084/m9.figshare.1234001
title: NPG data survey - raw data

description: Raw data from Nature Publishing Group Open Access and Data Publication surveys. Verbatims and other identifying fields redacted.
DOI: 10.6084/m9.figshare.1233996
title: structures for: Towards biochemically relevant QM computations on nucleic acids. Controlled electronic structure geometry optimizations of nucleic acids structural motifs using penalty restraint functions.

description: Recent developments of dispersion-corrected density functional theory methods allow for the first time to describe large fragments of nucleic acids (hundreds of atoms) with an accuracy clearly surpassing the accuracy of common biomolecular force fields. Such calculations can significantly improve the description of the potential energy surface of nucleic acids molecules, which may be useful for studies of molecular interactions and conformational preferences of nucleic acids, as well as verification and parameterization of other methods. The first of such studies, however, demonstrated that successful applications of accurate QM calculations to larger nucleic acids building blocks are hampered by difficulties to obtain geometries that are biochemically relevant and are not biased by non-native structural features. We present an approach that can greatly facilitate large-scale QM studies on nucleic acids, namely, electronic structure geometry optimizations of nucleic acid fragments utilizing a penalty function to restrain key internal coordinates with a specific focus on the torsional backbone angles. The work explores the viability of these restraint optimizations for DFT-D3, PM6-D3H and HF-3c optimizations on a set of examples (an UpA dinucleotide, a DNA G-quadruplex and a B-DNA fragment). Evaluation of different penalty function strengths reveals only a minor system-dependency and reasonable restraint values range from 0.01 to 0.05 Eh/rad2 for the backbone torsions. Restraints are crucial to perform the QM calculations on biochemically relevant conformations in implicit solvation and gas phase geometry optimizations. The reasons why to use restrained instead of constrained or unconstrained optimizations are explained and an open-source external optimizer is provided.
DOI: 10.6084/m9.figshare.1233997
title: Gaussian Job Archive for C5H13NO4

description: Archive of work produced using the resources of the Imperial College High Performance Computing Service.
DOI: 10.6084/m9.figshare.1233995
title: DATA for: QM Computations on Complete Nucleic Acids Building Blocks: Analysis of the Sarcin-Ricin RNA Motif Using DFT-D3, HF-3c, PM6-D3H, and MM Approaches

description: A set of conformations obtained from explicit solvent molecular dynamics (MD) simulations of the Sarcin-Ricin internal loop (SRL) RNA motif is investigated using quantum mechanical (QM, TPSS-D3/def2-TZVP DFT-D3) and molecular mechanics (MM, AMBER parm99bsc0+chi(ol3) force field) methods. Solvent effects are approximated using implicit solvent methods (COSMO for DFT-D3; GB and PB for MM). Large-scale DFT-D3 optimizations of the full 11-nucleotide motif are compared to MM results and reveal a higher flexibility of DFT-D3 over the MM in the optimization procedure. Conformational energies of the SRL motif expose significant differences in the DFT-D3 and MM energy descriptions that explain difficulties in MD simulations of the SRL motif. The TPSS-D3 data are in excellent agreement with results obtained by the hybrid functionals PW6B95-D3 and M06-2X. Computationally more efficient methods such as PM6-D3H and HF-3c show promising but partly inconsistent results. It is demonstrated that large-scale DFT-D3 computations on complete nucleic acids building blocks are a viable tool to complement the picture obtained from MD simulations and can be used as benchmarks for faster computational methods. Methodological challenges of large-scale QM computations on nucleic acids such as missing solvent-solute interactions and the truncation of the studied systems are discussed.