cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.19924581
title: Contulma vascaina sp. n. (Insecta: Trichoptera: Anomalopsychidae), a new species from Rio de Janeiro state, southeastern Brazil

description: ABSTRACT The caddisfly genus Contulma Flint, 1969, with 30 described species, is endemic to the Neotropics. In addition to the five species currently recorded from Brazil, a new species of Contulma is described and illustrated in this work. Contulma vascaina sp. n. is similar to C. sana Jardim and Nessimian, 2011 in prominent, slender and rod-like posterolateral lobe of segment IX, but the new species has a shorter posterolateral lobe, with long, spine-like seta apically. Contulma vascaina sp. n. can also be characterized by the presence of a large, hood-like sclerotized plate on the endothecal phallic membrane. The female genital structure is also described and illustrated.
DOI: 10.6084/m9.figshare.19924581.v1
title: Contulma vascaina sp. n. (Insecta: Trichoptera: Anomalopsychidae), a new species from Rio de Janeiro state, southeastern Brazil

description: ABSTRACT The caddisfly genus Contulma Flint, 1969, with 30 described species, is endemic to the Neotropics. In addition to the five species currently recorded from Brazil, a new species of Contulma is described and illustrated in this work. Contulma vascaina sp. n. is similar to C. sana Jardim and Nessimian, 2011 in prominent, slender and rod-like posterolateral lobe of segment IX, but the new species has a shorter posterolateral lobe, with long, spine-like seta apically. Contulma vascaina sp. n. can also be characterized by the presence of a large, hood-like sclerotized plate on the endothecal phallic membrane. The female genital structure is also described and illustrated.
DOI: 10.6084/m9.figshare.19924582.v1
title: Molecular characterization of Moenkhausia (Pisces: Characiformes) populations with different lateral line developmental levels

description: ABSTRACT The genera Hemigrammus and Moenkhausia have been traditionally diagnosed mainly by the former having lateral line completely pored whereas the latter having a lateral line with a few pored scales. Those features have been used to diagnose species of both genera in the upper Paraná River floodplain. Specimens with the diagnostic features of Moenkhausia bonita, collected in the upper Paraná River floodplain, exhibited different developmental levels of the lateral line, making it difficult to distinguish them from specimens of Hemigrammus sp. We analyzed the gene encoding cytochrome C oxidase I (COI) and intron 1 of the nuclear gene S7 to investigate the genetic similarities between the called Hemigrammus marginatus and M. bonita and to confirm their identities. Molecular sequences of other Moenkhausia species were analyzed for genus delimitation tests. The results reveal genetic similarities of M. bonita specimens with different developmental levels of the lateral line, and also distinguish between M. bonita and Hemigrammus sp. Species delimitation tests revealed that specimens from the upper Paraná River floodplain were M. bonita and were distinct from other Moenkhausia species. The developmental level of the lateral line is not a consistent characteristic that distinguishes between Moenkhausia and Hemigrammus species.
DOI: 10.6084/m9.figshare.19924582
title: Molecular characterization of Moenkhausia (Pisces: Characiformes) populations with different lateral line developmental levels

description: ABSTRACT The genera Hemigrammus and Moenkhausia have been traditionally diagnosed mainly by the former having lateral line completely pored whereas the latter having a lateral line with a few pored scales. Those features have been used to diagnose species of both genera in the upper Paraná River floodplain. Specimens with the diagnostic features of Moenkhausia bonita, collected in the upper Paraná River floodplain, exhibited different developmental levels of the lateral line, making it difficult to distinguish them from specimens of Hemigrammus sp. We analyzed the gene encoding cytochrome C oxidase I (COI) and intron 1 of the nuclear gene S7 to investigate the genetic similarities between the called Hemigrammus marginatus and M. bonita and to confirm their identities. Molecular sequences of other Moenkhausia species were analyzed for genus delimitation tests. The results reveal genetic similarities of M. bonita specimens with different developmental levels of the lateral line, and also distinguish between M. bonita and Hemigrammus sp. Species delimitation tests revealed that specimens from the upper Paraná River floodplain were M. bonita and were distinct from other Moenkhausia species. The developmental level of the lateral line is not a consistent characteristic that distinguishes between Moenkhausia and Hemigrammus species.
DOI: 10.6084/m9.figshare.7710494
title: Drought monitoring in the Brazilian Semiarid region

description: ABSTRACT Drought is a natural and recurrent phenomenon. It is considered ‘a natural disaster’ whenever it occurs in an intensive manner in highly populated regions, resulting in significant damage (material and human) and loss (socioeconomic). This paper presents the efforts developed to monitor the impact of drought in the semiarid region of Northeast Brazil. In this scope, information from different sources is compiled to support the evaluation and identification of impacted municipalities, with the main objective of supporting emergency actions to mitigate their impact. In the semiarid region of Brazil there are frequent occurrences of dry periods during the rainy season, which, depending on the intensity and duration, can cause significant damage to family-farmed crops, with a farming system characterized by low productivity indices. However, rain-fed agriculture has great economic expression and high social importance due to the region is densely occupied, and contributes to the establishment of communities in the countryside. Specifically, in the present study, the methodology adopted to monitor the impact of agricultural droughts, including an analysis of the hydrological year 2015-2016, is presented, considering different water stress indicators for the identification of the affected municipalities and assessment of the methods and tools developed.
DOI: 10.6084/m9.figshare.7710782
title: Generation of a triple-fluorescent mouse strain allows a dynamic and spatial visualization of different liver phagocytes in vivo

description: ABSTRACT Resident and circulating immune cells have been extensively studied due to their almost ubiquitous role in cell biology. Despite their classification under the “immune cell department”, it is becoming increasingly clear that these cells are involved in many different non-immune related phenomena, including fetus development, vascular formation, memory, social behavior and many other phenotypes. There is a huge potential in combining high-throughput assays - including flow cytometry and gene analysis - with in vivo imaging. This can improve our knowledge in both basic and clinical cell biology, and accessing the expression of markers that are relevant in the context of both homeostasis and disease conditions might be instrumental. Here we describe how we generated a novel mouse strain that spontaneously express three different fluorescence markers under control of well-studied receptors (CX3CR1, CCR2 and CD11c) that are involved in a plethora of stages of cell ontogenesis, maturation, migration and behavior. Also, we assess the percentage of the expression and co-expression of each marker under homeostasis conditions, and how these cells behave when a local inflammation is induced in the liver applying a cutting-edge technology to image cells by confocal intravital microscopy.
DOI: 10.6084/m9.figshare.7710782.v1
title: Generation of a triple-fluorescent mouse strain allows a dynamic and spatial visualization of different liver phagocytes in vivo

description: ABSTRACT Resident and circulating immune cells have been extensively studied due to their almost ubiquitous role in cell biology. Despite their classification under the “immune cell department”, it is becoming increasingly clear that these cells are involved in many different non-immune related phenomena, including fetus development, vascular formation, memory, social behavior and many other phenotypes. There is a huge potential in combining high-throughput assays - including flow cytometry and gene analysis - with in vivo imaging. This can improve our knowledge in both basic and clinical cell biology, and accessing the expression of markers that are relevant in the context of both homeostasis and disease conditions might be instrumental. Here we describe how we generated a novel mouse strain that spontaneously express three different fluorescence markers under control of well-studied receptors (CX3CR1, CCR2 and CD11c) that are involved in a plethora of stages of cell ontogenesis, maturation, migration and behavior. Also, we assess the percentage of the expression and co-expression of each marker under homeostasis conditions, and how these cells behave when a local inflammation is induced in the liver applying a cutting-edge technology to image cells by confocal intravital microscopy.
DOI: 10.5281/zenodo.6594065
title: Circus macrourus decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6594064
title: Circus macrourus decontaminated FSCR

description: .
DOI: 10.6084/m9.figshare.19924157.v2
title: Supplemental Data

description: <strong>Supplemental Data</strong>
DOI: 10.6084/m9.figshare.19918234
title: rodriques2019slide_Slide-seq_Mouse_Liver

description: rodriques2019slide_Slide-seq_Mouse_Liver_SCP354_Puck_180803_8
DOI: 10.6084/m9.figshare.19918234.v1
title: rodriques2019slide_Slide-seq_Mouse_Liver

description: rodriques2019slide_Slide-seq_Mouse_Liver_SCP354_Puck_180803_8
DOI: 10.6084/m9.figshare.19923764.v1
title: Specke tracking echocardiography.xlsx

description: The purpose of the study was to investigate the diagnostic value of the clinical, laboratory and especially echocardiographic characteristics including speckle tracking echocardiography (STE) of patients with ACS-like myocarditis and AMI. All the data were collected from patients’ clinical notes and electronic records and independently assessed by two investigators. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Local Ethics Committee.
DOI: 10.6084/m9.figshare.19923764
title: Database

description: All the data were collected from patients’ clinical notes and electronic records and independently assessed by two investigators. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Local Ethics Committee.
DOI: 10.6084/m9.figshare.19923764.v3
title: Database

description: All the data were collected from patients’ clinical notes and electronic records and independently assessed by two investigators. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Local Ethics Committee.
DOI: 10.6084/m9.figshare.19924157
title: Supplemental Data

description: <strong>Supplemental Data</strong>
DOI: 10.6084/m9.figshare.19924157.v4
title: Supplemental Data

description: <strong>Supplemental Data</strong>
DOI: 10.6084/m9.figshare.19923764.v2
title: Database

description: All the data were collected from patients’ clinical notes and electronic records and independently assessed by two investigators. The study was conducted in accordance with the Declaration of Helsinki, and the protocol was approved by the Local Ethics Committee.
DOI: 10.6084/m9.figshare.19924157.v3
title: Supplemental Data

description: <strong>Supplemental Data</strong>
DOI: 10.6084/m9.figshare.19924889
title: Supplementary Material for: A Case of Bullous Central Serous Chorioretinopathy Treated with Surgical Removal of Submacular Fibrin and Subsequent Photodynamic Therapy under Silicone Oil

description: Bullous retinal detachment is a rare complication in the chronic phase of central serous chorioretinopathy (CSC). Only a small subset of eyes with chronic CSC develops into the bullous variant of CSC (bCSC). In patients with bCSC, the elevated concentration of fibrin in the subretinal space leads to persistent retinal detachment and eventually, severe vision loss. We experienced a case of unilateral bCSC with a massive accumulation of subretinal fibrin. Multiple leakage points and dilated choroidal veins were also observed. The patient underwent surgical removal of subretinal fibrin and silicone oil injection followed by photodynamic therapy (PDT). After this treatment, the retina was successfully reattached, and the affected eye was free from recurrent exudative changes for more than 18 months. Massive subretinal fibrin could be surgically removed to prevent the formation of subretinal fibrosis and retinal fold, and PDT under silicone oil can control the underlying exudative changes in bCSC.
DOI: 10.6084/m9.figshare.19924889.v1
title: Supplementary Material for: A Case of Bullous Central Serous Chorioretinopathy Treated with Surgical Removal of Submacular Fibrin and Subsequent Photodynamic Therapy under Silicone Oil

description: Bullous retinal detachment is a rare complication in the chronic phase of central serous chorioretinopathy (CSC). Only a small subset of eyes with chronic CSC develops into the bullous variant of CSC (bCSC). In patients with bCSC, the elevated concentration of fibrin in the subretinal space leads to persistent retinal detachment and eventually, severe vision loss. We experienced a case of unilateral bCSC with a massive accumulation of subretinal fibrin. Multiple leakage points and dilated choroidal veins were also observed. The patient underwent surgical removal of subretinal fibrin and silicone oil injection followed by photodynamic therapy (PDT). After this treatment, the retina was successfully reattached, and the affected eye was free from recurrent exudative changes for more than 18 months. Massive subretinal fibrin could be surgically removed to prevent the formation of subretinal fibrosis and retinal fold, and PDT under silicone oil can control the underlying exudative changes in bCSC.
DOI: 10.5517/ccdc.csd.cc1z6w9c
title: CCDC 1823863: Experimental Crystal Structure Determination

description: Related Article: Debashis Roy, Rakesh Puttreddy, Kari Rissanen, Arijit Chakraborty, Rina Ghosh|2022|J.Mol.Struct.|1264|133334|doi:10.1016/j.molstruc.2022.133334
DOI: 10.5517/ccdc.csd.cc27qn7w
title: CCDC 2077348: Experimental Crystal Structure Determination

description: Related Article: Denis S. Koltun, Sergey M. Ivanov|2022|J.Mol.Struct.|1264|133321|doi:10.1016/j.molstruc.2022.133321
DOI: 10.5517/ccdc.csd.cc26lz3x
title: CCDC 2044019: Experimental Crystal Structure Determination

description: Related Article: Denis S. Koltun, Sergey M. Ivanov|2022|J.Mol.Struct.|1264|133321|doi:10.1016/j.molstruc.2022.133321
DOI: 10.5281/zenodo.6594109
title: Erythroxylum anguifugum decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6594108
title: Erythroxylum anguifugum decontaminated FSCR

description: .
DOI: 10.5519/qd.qs35g4pg
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.15156/bio/sh1681081.08fu
title: SH1681081.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1681082.08fu
title: SH1681082.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh317528.07fu
title: SH317528.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh317529.07fu
title: SH317529.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh317530.07fu
title: SH317530.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1681083.08fu
title: SH1681083.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh1681084.08fu
title: SH1681084.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.