cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2k3dfj
title: CCDC 2356757: Experimental Crystal Structure Determination

description: Related Article: Lizhong He, Tingting Dong, Xiaoyang Hu, Zibao Gan|2024|Inorg.Chem.Front.|11|5979|doi:10.1039/D4QI01275E
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2k5c6b
title: CCDC 2358641: Experimental Crystal Structure Determination

description: Related Article: Wei Zhang, Shuai Han, Si-Yi Zhang, Dong-Xiao Jiang, Jinjin Chen, Zhen Wang, Yao-Fu Zeng|2024|Org.Chem.Front.|11|5167|doi:10.1039/D4QO01118J
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.13622717
title: Code and datasets for: Cost-effective land carbon sink conservation in China and its limited synergy with biodiversity

description: This repository contains code and datasets for the paper "Cost-effective land carbon sink conservation in China and its limited synergy with biodiversity."

A. Code structure

The code in this study is organized into two main parts:

1. Machine learning code

The “machine_learning” folder contains Python code for training machine learning models (ANN, RF, XGBoost, and LightGBM) and using the models to make predictions. The code is written in Python 3.8 and runs on Ubuntu 20.04 with CUDA 11.8.

2. Data analysis code

The “data_analysis” folder contains Python code for the analyses decribed in the paper and generating figures. The code is written in Python 3.8 and can be executed on both Ubuntu and Windows environments.

All code is provided in Jupyter Notebook, displaying results at each step. Input data required for the code to run are stored in “00_data\input” directory within each folder.

B. Dataset Structure

The datasets generated by the code are located in the “00_data\output” directory within each folder:

1. Machine learning outputs

"machine_learning\00_data\output" contains predicted carbon sink capacity (indicated by NBP, unit: gC m-2 d-1) for past (2001-2015) and future (2020-2100) periods by four machine learning models.

2. Data analysis outputs

"data_analysis\00_data\output" contains the main results of this study:





The "CS_XGB_LGB_mean_std_2020_2100" folder contains average carbon sink capacity predictions from the high-performance models (XGBoost and LightGBM) and uncertainties (1 std) for all pixels. The pixel means are illustrated in Fig. 1 of the paper.




The "CS_dCS_PD" folder contains .tif files for carbon sink capacity (CS), changes in carbon sink capacity (∆CS), and population density (PD) under future scenarios (SSP1-2.6, SSP2-4.5, and SSP5-8.5) and periods (2020-2060 and 2060-2100) . They are depicted in figs. S9-11 and used for cost-benefit analysis.




The "cost_benefit" folder contains .tif files for cost-benefit analysis results mapped in space under future scenarios and periods, as shown in Fig. 2 of the paper.




The "priority_levels" folder contains .tif files for cost-effective priority levels mapped in space under future scenarios and periods, as shown in Fig. 3 of the paper.




The "cs_bio_priorities" folder contains .tif files for multi-scenario and -period mean priorities for carbon sink conservation (Fig. 4A), priorities for biodiversity conservation, and their synergy (Fig. 5C).




"source_data_for_figures.xlsx" contains the source data for all figures in this paper, including those in the supplementary materials.
DOI: 10.14468/17wj-xq86
title: D2O v He Coolant - Inputs Outputs

description: Input and output files used to run neutronics comparisons between water and helium within the Inboard First Wall using OpenMC (openmc.org), v0.13.4.
description: Programme Area:STEP
description: NAME,SIZE,TYPE,EXT,LAST_MODIFIED,FORMAT_NAME,MIME_TYPE
Ref_54_-_D2O_vs_He_Coolant_-_Inputs_Outputs.zip,1065967,Container,zip,2024-09-19T14:54:49,ZIP Format,application/zip
PI-5 D2O vs He Coolant - Inputs Outputs,,Folder,,,,
d2o,,Folder,,,,
he,,Folder,,,,
output_d2o_hts_lifetime.csv,5861,File,csv,2024-07-08T13:25:28,Comma Separated Values,text/csv
output_d2o_vv_dpa.csv,3528,File,csv,2024-07-08T13:31:36,Comma Separated Values,text/csv
materials_d2o.xml,33299,File,xml,2024-05-24T10:58:10,Extensible Markup Language,"application/xml, text/xml"
geometry_d2o.xml,781589,File,xml,2024-05-24T10:58:10,Extensible Markup Language,"application/xml, text/xml"
geometry_he.xml,781589,File,xml,2024-05-24T16:05:56,Extensible Markup Language,"application/xml, text/xml"
statepoint.d2o.h5,577384,File,h5,2024-05-24T11:39:22,HDF5,application/x-hdf5
materials_he.xml,33443,File,xml,2024-05-24T16:05:56,Extensible Markup Language,"application/xml, text/xml"
output_he_hts_lifetime.csv,5868,File,csv,2024-07-08T13:28:14,Comma Separated Values,text/csv
output_he_vv_dpa.csv,3527,File,csv,2024-07-08T13:30:36,Comma Separated Values,text/csv
settings.xml,4311,File,xml,2024-07-08T13:39:22,Extensible Markup Language,"application/xml, text/xml"
tallies.xml,22573,File,xml,2024-05-24T10:58:10,Extensible Markup Language,"application/xml, text/xml"
statepoint.he.h5,585120,File,h5,2024-05-24T16:05:54,HDF5,application/x-hdf5
DOI: 10.6084/m9.figshare.27075067
title: Transcriptomics (BulkRNAseq) from MDA-MB-231 cells cultured in different engineered bone tissue conditions

description: Bulk RNA sequencing data from <i>Baldassarri, Tavakol, Vunjak-Novakovic </i><i>et al.,</i> PNAS (in press). MDA-MB-231 cancer cells cultured on engineered bone tissues with either osteoblasts only (OB; GI001-GI004) or multiple cell types (ME: osteoblasts, endothelial cells, and mesenchymal stem/stromal cells; GI005-GI008).
DOI: 10.6084/m9.figshare.27075067.v1
title: Transcriptomics (BulkRNAseq) from MDA-MB-231 cells cultured in different engineered bone tissue conditions

description: Bulk RNA sequencing data from <i>Baldassarri, Tavakol, Vunjak-Novakovic </i><i>et al.,</i> PNAS (in press). MDA-MB-231 cancer cells cultured on engineered bone tissues with either osteoblasts only (OB; GI001-GI004) or multiple cell types (ME: osteoblasts, endothelial cells, and mesenchymal stem/stromal cells; GI005-GI008).
DOI: 10.5281/zenodo.12712683
title: ES-PLANTUFAM: um Sistema Especialista de Identificação de Famílias de Plantas Amazônicas por Características Morfológicas Diagnósticas

description: The Amazon Rainforest, known for its biodiversity, hosts a wide range of plants whose accurate identification is essential for the fields of taxonomy, ecology, and conservation. This article describes the development and evaluation of ES-PLANTUFAM, an online expert system for identifying angiosperm families in the Brazilian Amazon. The system was created based on data collected from specialized literature. Different decision tree algorithms were tested using the Weka program, and the system was implemented in ES-Builder. Usability and accuracy tests and validations were conducted with samples deposited at the HUAM/UFAM Herbarium. ES-PLANTUFAM proved to be an effective tool for identifying angiosperms, offering an interactive and accessible platform that supports botanical education and research. It integrates expert knowledge and modern technologies to enhance the understanding of diagnostic morphological characteristics of plants.
DOI: 10.5281/zenodo.12712684
title: ES-PLANTUFAM: um Sistema Especialista de Identificação de Famílias de Plantas Amazônicas por Características Morfológicas Diagnósticas

description: The Amazon Rainforest, known for its biodiversity, hosts a wide range of plants whose accurate identification is essential for the fields of taxonomy, ecology, and conservation. This article describes the development and evaluation of ES-PLANTUFAM, an online expert system for identifying angiosperm families in the Brazilian Amazon. The system was created based on data collected from specialized literature. Different decision tree algorithms were tested using the Weka program, and the system was implemented in ES-Builder. Usability and accuracy tests and validations were conducted with samples deposited at the HUAM/UFAM Herbarium. ES-PLANTUFAM proved to be an effective tool for identifying angiosperms, offering an interactive and accessible platform that supports botanical education and research. It integrates expert knowledge and modern technologies to enhance the understanding of diagnostic morphological characteristics of plants.
DOI: 10.15468/dl.xaend4
title: Occurrence Download

description: A dataset containing 7731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Colombia",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "StateProvince is one of (Santander, Santander (?), Santand., Santandar, Santander Department, Santander Dept, Boyaca, BOYAC??, Boyaca Department, Boyaca Dept, Boyaca Dept., Boyaca department, Boyaca dept., Boyaca y Santander)",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 7731 records from 30 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024526-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.e7zayb
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Procyon cancrivorus G",
 "Year 2000-2024"
 ]
}

 The dataset includes 196 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024527-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kh73p7
title: Occurrence Download

description: A dataset containing 196 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Metaleptobasis bicornis (Selys, 1877)"
 ]
}

 The dataset includes 196 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024528-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13819969
title: trachylepis_striata_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.13819970
title: trachylepis_striata_decontaminated_FSCR.fasta.gz
DOI: 10.5255/ukda-sn-857367
title: Understanding Sexual Violence in Sex Working Populations: Aggregate Survey Data, 2023

description: The data were collected across four different legal environments, with reference to legislation governing sex work and sexual violence: legalisation (Nevada USA) where legal brothels are permitted in 10 of Nevada’s 17 counties; client criminalisation (Northern Ireland) whereby following the Nordic model, paying for sexual services is now a summary offence with a maximum penalty of 12 months in prison; decriminalisation (New Zealand) where prostitution, including the operation of brothels is permitted subject to municipal regulation and partial criminalisation (England, Scotland and Wales) whereby the act of selling sex itself is not illegal, but laws have been drafted around a number of facets of sex work such as brothel keeping, soliciting, living of the proceeds of prostitution and so forth.

The data files contains a Microsoft excel worksheet with 17 tabs – a contents page is provided on the first tab. The frequency data for the survey responses has been presented by question or topic. The full wording of the questions has been provided at the top of each of the data tables or the top of each of the tabs.
DOI: 10.3886/e209206
title: Data for: Re-examining the Effect of Wage Delegation: A Replication Study of Charness et al. (2012)

description: Experimental research has explored the effects
of wage delegation on employee performance, with the pioneering attempt by
Charness et al. (2012) in “The Hidden Advantage of Delegation: Pareto
Improvements in a Gift Exchange Game”, published in the American Economic
Review. We conducted a replication of their experiment for two main reasons:
first, to validate the original findings that have influenced subsequent
research, and second, to examine whether these results hold in contexts with
reduced social proximity between workers and employers, a relevant issue due to
the rise of remote work. Our online experiment, involving 410 participants,
followed the original study’s design but used a different sample. We
successfully replicated the main finding that wage delegation increases
employee effort, though the effect was smaller and largely due to employees
granting themselves higher wages. These results support the notion that with
decreasing social proximity, formal controls increase in importance.<br>
DOI: 10.18112/openneuro.ds005250.v1.1.4
title: Single-echo/multi-echo comparison pilot
DOI: 10.15468/dl.mjwv4v
title: Occurrence Download

description: A dataset containing 468 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thaptomys nigrita (Lichtenstein, 1829)"
 ]
}

 The dataset includes 468 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024529-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.13819987
title: trioceros_balebicornutus_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.13819988
title: trioceros_balebicornutus_decontaminated_FSCR.fasta.gz
DOI: 10.15468/dl.5h46g4
title: Occurrence Download

description: A dataset containing 2429 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Crateva tapia L."
 ]
}

 The dataset includes 2429 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024531-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c3zxaz
title: Occurrence Download

description: A dataset containing 7268 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Fiocruz/CMIOC - Coleção de Moluscos do Instituto Oswaldo Cruz"
 ]
}

 The dataset includes 7268 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024532-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2x9wpk
title: Occurrence Download

description: A dataset containing 2462 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chiroptera"
 ]
}

 The dataset includes 2462 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024533-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nfxeud
title: Occurrence Download

description: A dataset containing 28788 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is one of (South America, North America)",
 "TaxonKey is Didelphis marsupialis Linnaeus, 1758"
 ]
}

 The dataset includes 28788 records from 453 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0024534-240906103802322/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qymura
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Anchoviella perfasciata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148739-230224095556074/datasets/export for details.
DOI: 10.15468/dl.pjhg9s
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((71.08699 33.21437,76.08027 33.21437,76.08027 35.21388,71.08699 35.21388,71.08699 33.21437))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Noccaea caerulescens (J.Presl & C.Presl) F.K.Mey.",
 "Year 1971-2021"
 ]
}

 The dataset includes 31 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0070031-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qlupjb
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aphrastura masafuerae (Philippi & Landbeck, 1866)"
 ]
}

 The dataset includes 7 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005794-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.atj4mu
title: Occurrence Download

description: A dataset containing 3046 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bidens bipinnata L."
 ]
}

 The dataset includes 3046 records from 152 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005794-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cjy2dr
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium palaestinum Kollmann ex Fragman & N.Friesen"
 ]
}

 The dataset includes 17 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0026212-240216155721649/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p336fy
title: Occurrence Download

description: A dataset containing 518 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Chile",
 "TaxonKey is Quillaja saponaria Molina"
 ]
}

 The dataset includes 518 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198220-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dmmmlw
title: Occurrence Download

description: A dataset containing 165537 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mirounga leonina (Linnaeus, 1758)"
 ]
}

 The dataset includes 165537 records from 70 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005794-171025204727650/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u7ftq9
title: Occurrence Download

description: A dataset containing 1692 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cotula alpina (Hook.fil.) Hook.fil."
 ]
}

 The dataset includes 1692 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148753-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p32n3b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Bellator militaris)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148698-230224095556074/datasets/export for details.
DOI: 10.15468/dl.ynstwm
title: Occurrence Download

description: A dataset containing 1752 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Terpsiphone bourbonnensis (Statius Muller, 1776)"
 ]
}

 The dataset includes 1752 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0198225-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z9ycpu
title: Occurrence Download

description: A dataset containing 524 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aspidoscelis motaguae (Sackett, 1941)"
 ]
}

 The dataset includes 524 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005795-150922153815467/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jbtnvh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Raja eglanteria)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148699-230224095556074/datasets/export for details.
DOI: 10.15468/dl.7lmhzn
title: Occurrence Download

description: A dataset containing 530926 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prunella modularis (Linnaeus, 1758)"
 ]
}

 The dataset includes 530926 records from 527 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005795-160118175350007/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gte8x9
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is one of (Bollmannia communis)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0148690-230224095556074/datasets/export for details.
DOI: 10.15468/dl.zhu4fl
title: Occurrence Download

description: A dataset containing 8725 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is UK Butterfly Monitoring Scheme (UKBMS)",
 "Year 2005-2005",
 "TaxonKey is Aphantopus hyperantus (Linnaeus, 1758)"
 ]
}

 The dataset includes 8725 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005439-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dinx1z
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Aplochiton marinus Eigenmann, 1928"
 ]
}

 The dataset includes 7 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005795-160526112335914/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.