cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.25442/hku.17012237
title: Supporting data for "Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Monuments"

description: Supporting data for Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Monuments. The dataset is serving as the supporting information and providing the raw data for the thesis "Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Mounment". The dataset This dataset deals with the compositional structure of the microbiome, microbial abundance, physiological and biochemical functions of microorganisms, pathogenicity and transmissibility of microorganisms.
DOI: 10.25442/hku.17012237.v1
title: Supporting data for "Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Monuments"

description: Supporting data for Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Monuments. The dataset is serving as the supporting information and providing the raw data for the thesis "Microbiome Characterization and Nitrogen Transformation on Angkor Sandstone Mounment". The dataset This dataset deals with the compositional structure of the microbiome, microbial abundance, physiological and biochemical functions of microorganisms, pathogenicity and transmissibility of microorganisms.
DOI: 10.25442/hku.17032058
title: Supporting Data for Development of Community Video in Tibetan Areas: A Case Study of the Film Class at Jigme Gyaltsen Vocational School for Ethnicities

description: It is a collection of supporting data, consisting of fieldnotes, interview, and secondary resources. Fieldnotes keep track of what I observed and experienced in my fieldtrips. Interviews record people's responses to my questions. Secondary resources are relevant figures, including those found in the existing studies, spread on the mass media, and transmitted by target communities.<br>
DOI: 10.25442/hku.17032058.v1
title: Supporting Data for Development of Community Video in Tibetan Areas: A Case Study of the Film Class at Jigme Gyaltsen Vocational School for Ethnicities

description: It is a collection of supporting data, consisting of fieldnotes, interview, and secondary resources. Fieldnotes keep track of what I observed and experienced in my fieldtrips. Interviews record people's responses to my questions. Secondary resources are relevant figures, including those found in the existing studies, spread on the mass media, and transmitted by target communities.<br>
DOI: 10.14457/cu.the.1975.6
title: การหาปริมาณก๊าซเรดอนในอากาศ
DOI: 10.14457/cu.the.1975.7
title: Inclined-film vacuum evaporation of fruit juices
DOI: 10.14457/cu.the.2013.1914
title: Synthesis of glycol-and amine-containing anthraquinones exhibiting of cytotoxicity, DNA-Binding affinity and apoptosis
DOI: 10.14457/cu.the.2013.1915
title: Preparation of novel self-assembled coordination nanoparticles from surfactants and gadolinium ion to stabilize curcumin derivatives in buffered solution
DOI: 10.5281/zenodo.5726336
title: DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) within Unsorted Trap Catches

description: Data to support the paper: DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) within Unsorted Trap Catches
DOI: 10.5281/zenodo.4682859
title: DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) within Unsorted Trap Catches

description: Data to support the paper: DNA Metabarcoding Enables High-Throughput Detection of Spotted Wing Drosophila (Drosophila suzukii) within Unsorted Trap Catches
DOI: 10.6084/m9.figshare.17080661
title: Dry weight.xlsx

description: LDG：微生物制剂处理轻度荒漠化草地，MDG：微生物制剂处理中度荒漠化草地，HDG：微生物制剂处理重度荒漠化草地，C-LDG：微生物制剂处理轻度荒漠化草地，C-MDG：中度荒漠化草地，微生物制剂处理微生物药剂处理，C-HDG：未经微生物药剂处理的重度荒漠化草地。
DOI: 10.6084/m9.figshare.17080661.v1
title: Dry weight.xlsx

description: LDG：微生物制剂处理轻度荒漠化草地，MDG：微生物制剂处理中度荒漠化草地，HDG：微生物制剂处理重度荒漠化草地，C-LDG：微生物制剂处理轻度荒漠化草地，C-MDG：中度荒漠化草地，微生物制剂处理微生物药剂处理，C-HDG：未经微生物药剂处理的重度荒漠化草地。
DOI: 10.14457/cu.the.2013.1916
title: Improving heterogeneous workload performance in server virtualization based on user behaviors
DOI: 10.15151/esrf-es-536304694
title: FInnish National Protein Crystallography Consortium

description: The Finnish BAG encompasses 25 groups active in crystallography in Finland. The projects vary widely and include membrane proteins such as membrane pyrophosphatases, and various protein complexes and receptors (growth factor receptors, integrins), signaling proteins such as kinases, other proteins involved in disease and antibiotics development (neuronal adhesion and myelin proteins, PP2A, ADP-ribosylation and biocatalytic enzymes) and several pathogen proteins (e.g. viral proteins) and various enzyme targets and e.g. studies on phytochrome photoreceptors and complexes involved in actin and cytoskeleton dynamics and regulation. Overall the BAG serves the national needs for highly variable projects, with different biological and biotechnological applications. Several project will benefit from microfocus beam lines and tunable wavelength options for phasing, others benefit from quick robust screening by MASSIF. Biology lab is needed for SAXS experiments.
DOI: 10.15151/esrf-es-631939220
title: spectroscopic bragg coherent diffraction imaging

description: Exploiting an absorption edge to enhance contrast available in Bragg CDI
DOI: 10.6084/m9.figshare.17080694
title: Data set.xlsx

description: This is the data analysis
DOI: 10.6084/m9.figshare.17080697
title: Yield, microorganism1.xlsx

description: 通过Illunmina HiSeq平台，每个土壤DNA的覆盖率超过99%，基于97%的相似性定位物种水平.
DOI: 10.6084/m9.figshare.17080697.v1
title: Yield, microorganism1.xlsx

description: 通过Illunmina HiSeq平台，每个土壤DNA的覆盖率超过99%，基于97%的相似性定位物种水平.
DOI: 10.5517/ccdc.csd.cc28pq1r
title: CCDC 2106234: Experimental Crystal Structure Determination

description: Related Article: Hong-Wu Zhao, Heng Zhang, Lu-Yu Cai, Zhe Tang, Xiao-Zu Fan, Hui-Hui Wu, Xiao-Fan Bi|2021|Synlett|32|1974|doi:10.1055/a-1642-0598
DOI: 10.6084/m9.figshare.17080700
title: Soil physical and chemical properties.xlsx

description: 细菌群落的香农-维纳多样性指数，<i>D</i>：细菌群落的辛普森多样性指数，SOM：土壤有机质，SWC：土壤含水量，TN：土壤总氮，TP：土壤总磷，DW： 草料产量的干重，WUG：地下生物量的干重。
DOI: 10.6084/m9.figshare.17080731
title: Definitive therapy for squamous cell carcinoma of the anus with synchronous metastases – a report from the Danish Anal Cancer Group

description: Definitive therapy for squamous cell carcinoma of the anus with synchronous metastases – a report from the Danish Anal Cancer Group
DOI: 10.6084/m9.figshare.17080731.v1
title: Definitive therapy for squamous cell carcinoma of the anus with synchronous metastases – a report from the Danish Anal Cancer Group

description: Definitive therapy for squamous cell carcinoma of the anus with synchronous metastases – a report from the Danish Anal Cancer Group
DOI: 10.6084/m9.figshare.17080724
title: UTAUT and Purchase Decision Data Collection

description: Dataset of data collection for exploring UTAUT in customer Purchase Decision (Online Ticket Purchasing in Indonesia during COVID-19) research instrument
DOI: 10.5281/zenodo.5724990
title: Data for a mapping study about the usage of MDE in Safety and Security Domain

description: Data for a mapping study. Contains a listing of papers and information about their content.
DOI: 10.6084/m9.figshare.17080739
title: Supplementary Material for: <b><i>Porphyromonas gingivalis</i></b> Gingipains-Mediated Degradation of Plasminogen Activator Inhibitor-1 Leads to Delayed Wound Healing Responses in Human Endothelial Cells

description: Plasminogen activator inhibitor-1 (PAI-1), a serine protease inhibitor, is constitutively produced by endothelial cells and plays a vital role in maintaining vascular homeostasis. Chronic periodontitis is an inflammatory disease characterized by bleeding of periodontal tissues that support the tooth. In this study, we aimed to determine the role of PAI-1 produced by endothelial cells in response to infections caused by the primary periodontal pathogen <i>Porphyromonas gingivalis</i>. We demonstrated that <i>P. gingivalis</i> infection resulted in significantly reduced PAI-1 levels in human endothelial cells. This reduction in PAI-1 levels could be attributed to the proteolysis of PAI-1 by <i>P. gingivalis</i> proteinases, especially lysine-specific gingipain-K (Kgp). We demonstrated the roles of these degradative enzymes in the endothelial cells using a Kgp-specific inhibitor and <i>P. gingivalis</i> gingipain-null mutants, in which the lack of the proteinases resulted in the absence of PAI-1 degradation. The degradation of PAI-1 by <i>P. gingivalis</i> induced a delayed wound healing response in endothelial cell layers via the low-density lipoprotein receptor-related protein. Our results collectively suggested that the proteolysis of PAI-1 in endothelial cells by gingipains of <i>P. gingivalis</i> might lead to the deregulation of endothelial homeostasis, thereby contributing to the permeabilization and dysfunction of the vascular endothelial barrier.
DOI: 10.23729/c126a18f-09ee-4149-b87f-d20b3675400d
title: CircVol lab day 90

description: CircVol (https://6aika.fi/project/circvol/) was a project where new uses were developed for waste materials to promote circular economy. In this part of the project dredging mass from Matalahti in Naantali was stabilized using several recipes. More information from: Jarva, J., Eriksson, J.-E., Larkela, L, Auri, J., Kronberg, T., Tarvainen, T., Kuva, J., Järvinen, M., Hänninen, H., Lehtonen, M., Ketola, M., Huhtinen, R., 2021. CircVol-projekti: ruoppausmassojen stabiloinnin kenttäkoe Naantalin Matalahdella. Geologian Tutkimuskeskus. Työraportti 19/2021. This dataset is day 90 scans of lab samples. Preview dataset found at https://doi.org/10.23729/206fbe49-b411-485a-9c48-5110323e43f1 . To obtain data, please contact fairdata-pas@gtk.fi .
DOI: 10.25345/c5q294
title: MassIVE MSV000088449 - GNPS_QINGLIN Fungi_20211124_Molecular networking parameters
title: Public datasets remain alive long after publication; for example, they will be searched periodically against the ever-growing annotated GNPS spectral libraries, potentially yielding new putative annotations within those datasets. If you subscribe to a dataset, you will receive email notifications of new identifications that are made within that dataset as well as about other datasets that exhibit chemical similarities to the subscribed dataset. This allows for users to be connected via their research interest to similar datasets.
DOI: 10.6084/m9.figshare.17080793
title: Supplementary Material for: Maximal Exercise Capacity in Chronic Kidney Disease Stage 4–5 Patients Transitioning to Renal Replacement Therapy or Continuing Conservative Care: A Longitudinal Follow-Up Study

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) is associated with impaired maximal exercise capacity (MEC). However, data are scarce on the development of MEC in CKD stage 4–5 patients transitioning to renal replacement therapy (RRT). <b><i>Methods:</i></b> We explored the change in MEC measured in watts (Wlast4) with 2 consecutive maximal bicycle stress ergometry tests in 122 CKD stage 4–5 patients transitioning to dialysis and transplantation in an observational follow-up study. <b><i>Results:</i></b> Mean age was 58.9 ± 13.9 years and 43 (35.2%) were female. Mean time between the baseline and follow-up ergometry tests was 1,012 ± 327 days and 29 (23.8%) patients had not initiated RRT, 50 (41.0%) were undergoing dialysis, and 43 (35.2%) had received a kidney transplant at the time of the follow-up ergometry test. The mean Wlast4 was 91 ± 37 W and 84 ± 37 W for the baseline and follow-up ergometry tests, respectively (<i>p</i> &lt; 0.001). The mean Wlast4 declined between the baseline and follow-up ergometry tests in patients not requiring RRT (<i>p</i> = 0.001) and transplant recipients (<i>p</i> = 0.005), but not in dialysis patients (<i>p</i> = 0.478). There were no differences in the ratio of Wlast4 of the follow-up to the baseline ergometry tests (∆Wlast4) between patients on different treatment modalities at the time of the follow-up test (<i>p</i> = 0.097). Mean capillary blood bicarbonate was significantly associated with ∆Wlast4 after adjusting for age and treatment modality in the multivariate linear regression analysis (β = 0.226, <i>p</i> = 0.012). <b><i>Conclusion:</i></b> MEC declined or remained poor in advanced CKD patients transitioning to RRT or continuing conservative care in this observational study. Mean capillary blood bicarbonate was independently associated with the development of MEC.
DOI: 10.6084/m9.figshare.17080793.v1
title: Supplementary Material for: Maximal Exercise Capacity in Chronic Kidney Disease Stage 4–5 Patients Transitioning to Renal Replacement Therapy or Continuing Conservative Care: A Longitudinal Follow-Up Study

description: <b><i>Introduction:</i></b> Chronic kidney disease (CKD) is associated with impaired maximal exercise capacity (MEC). However, data are scarce on the development of MEC in CKD stage 4–5 patients transitioning to renal replacement therapy (RRT). <b><i>Methods:</i></b> We explored the change in MEC measured in watts (Wlast4) with 2 consecutive maximal bicycle stress ergometry tests in 122 CKD stage 4–5 patients transitioning to dialysis and transplantation in an observational follow-up study. <b><i>Results:</i></b> Mean age was 58.9 ± 13.9 years and 43 (35.2%) were female. Mean time between the baseline and follow-up ergometry tests was 1,012 ± 327 days and 29 (23.8%) patients had not initiated RRT, 50 (41.0%) were undergoing dialysis, and 43 (35.2%) had received a kidney transplant at the time of the follow-up ergometry test. The mean Wlast4 was 91 ± 37 W and 84 ± 37 W for the baseline and follow-up ergometry tests, respectively (<i>p</i> &lt; 0.001). The mean Wlast4 declined between the baseline and follow-up ergometry tests in patients not requiring RRT (<i>p</i> = 0.001) and transplant recipients (<i>p</i> = 0.005), but not in dialysis patients (<i>p</i> = 0.478). There were no differences in the ratio of Wlast4 of the follow-up to the baseline ergometry tests (∆Wlast4) between patients on different treatment modalities at the time of the follow-up test (<i>p</i> = 0.097). Mean capillary blood bicarbonate was significantly associated with ∆Wlast4 after adjusting for age and treatment modality in the multivariate linear regression analysis (β = 0.226, <i>p</i> = 0.012). <b><i>Conclusion:</i></b> MEC declined or remained poor in advanced CKD patients transitioning to RRT or continuing conservative care in this observational study. Mean capillary blood bicarbonate was independently associated with the development of MEC.
DOI: 10.5281/zenodo.4361383
title: Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-α-glucosylglycerol

description: We provide here the underlying data of the publication "Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-α-glucosylglycerol". Please find the abstract below. <strong>Background: </strong>Glucosylglycerol (2‑O‑α‑D‑glucosyl‑sn‑glycerol; GG) is a natural osmolyte from bacteria and plants. It has promising applications as cosmetic and food‑and‑feed ingredient. Due to its natural scarcity, GG must be prepared through dedicated synthesis, and an industrial bioprocess for GG production has been implemented. This process uses sucrose phosphorylase (SucP)‑catalyzed glycosylation of glycerol from sucrose, applying the isolated enzyme in immobilized form. A whole cell‑based enzyme formulation might constitute an advanced catalyst for GG production. Here, recombinant production in <em>Escherichia coli</em> BL21(DE3) was compared systematically for the SucPs from <em>Leuconostoc mesenteroides</em> (LmSucP) and <em>Bifidobacterium adolescentis</em> (BaSucP) with the purpose of whole cell catalyst development.<br> <strong>Results:</strong> Expression from pQE30 and pET21 plasmids in <em>E. coli</em> BL21(DE3) gave recombinant protein at 40–50% share of total intracellular protein, with the monomeric LmSucP mostly soluble (≥80%) and the homodimeric BaSucP more prominently insoluble (~40%). The cell lysate specific activity of LmSucP was 2.8‑fold (pET21; 70±24 U/mg; N=5) and 1.4‑fold (pQE30; 54±9 U/mg, N=5) higher than that of BaSucP. Synthesis reactions revealed LmSucP was more regioselective for glycerol glycosylation (~88%; position O2 compared to O1) than BaSucP (~66%), thus identifying LmSucP as the enzyme of choice for GG production. Fed‑batch bioreactor cultivations at controlled low specific growth rate (µ=0.05 h<sup>−1</sup>; 28°C) for LmSucP production (pET21) yielded ~40 g cell dry mass (CDM)/L with an activity of 2.0×10<sup>4</sup> U/g CDM, corresponding to 39 U/mg protein. The same production from the pQE30 plasmid gave a lower yield of 6.5×10<sup>3</sup> U/g CDM, equivalent to 13 U/mg. A single freeze–thaw cycle exposed ~70% of the intracellular enzyme activity for GG production (~65 g/L, ~90% yield from sucrose), without releasing it from the cells during the reaction.<br> <strong>Conclusions:</strong> Compared to BaSucP, LmSucP is preferred for regioselective GG production. Expression from pET21 and pQE30 plasmids enables high‑yield bioreactor production of the enzyme as a whole cell catalyst. The freeze– thaw treated cells represent a highly active, solid formulation of the LmSucP for practical synthesis.
DOI: 10.5281/zenodo.4361382
title: Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-α-glucosylglycerol

description: We provide here the underlying data of the publication "Whole cell-based catalyst for enzymatic production of the osmolyte 2-O-α-glucosylglycerol". Please find the abstract below. <strong>Background: </strong>Glucosylglycerol (2‑O‑α‑D‑glucosyl‑sn‑glycerol; GG) is a natural osmolyte from bacteria and plants. It has promising applications as cosmetic and food‑and‑feed ingredient. Due to its natural scarcity, GG must be prepared through dedicated synthesis, and an industrial bioprocess for GG production has been implemented. This process uses sucrose phosphorylase (SucP)‑catalyzed glycosylation of glycerol from sucrose, applying the isolated enzyme in immobilized form. A whole cell‑based enzyme formulation might constitute an advanced catalyst for GG production. Here, recombinant production in <em>Escherichia coli</em> BL21(DE3) was compared systematically for the SucPs from <em>Leuconostoc mesenteroides</em> (LmSucP) and <em>Bifidobacterium adolescentis</em> (BaSucP) with the purpose of whole cell catalyst development.<br> <strong>Results:</strong> Expression from pQE30 and pET21 plasmids in <em>E. coli</em> BL21(DE3) gave recombinant protein at 40–50% share of total intracellular protein, with the monomeric LmSucP mostly soluble (≥80%) and the homodimeric BaSucP more prominently insoluble (~40%). The cell lysate specific activity of LmSucP was 2.8‑fold (pET21; 70±24 U/mg; N=5) and 1.4‑fold (pQE30; 54±9 U/mg, N=5) higher than that of BaSucP. Synthesis reactions revealed LmSucP was more regioselective for glycerol glycosylation (~88%; position O2 compared to O1) than BaSucP (~66%), thus identifying LmSucP as the enzyme of choice for GG production. Fed‑batch bioreactor cultivations at controlled low specific growth rate (µ=0.05 h<sup>−1</sup>; 28°C) for LmSucP production (pET21) yielded ~40 g cell dry mass (CDM)/L with an activity of 2.0×10<sup>4</sup> U/g CDM, corresponding to 39 U/mg protein. The same production from the pQE30 plasmid gave a lower yield of 6.5×10<sup>3</sup> U/g CDM, equivalent to 13 U/mg. A single freeze–thaw cycle exposed ~70% of the intracellular enzyme activity for GG production (~65 g/L, ~90% yield from sucrose), without releasing it from the cells during the reaction.<br> <strong>Conclusions:</strong> Compared to BaSucP, LmSucP is preferred for regioselective GG production. Expression from pET21 and pQE30 plasmids enables high‑yield bioreactor production of the enzyme as a whole cell catalyst. The freeze– thaw treated cells represent a highly active, solid formulation of the LmSucP for practical synthesis.
DOI: 10.6084/m9.figshare.17041157
title: OCT_Aurora_Tegaderm_Data File ver.3.1_Graphs.csv

description: Difference in maximum indentation between bare skin and skin with plastic form. Skin w/o plastic film was indented with mechanical indenter. The resulting skin displacement was captured using an OCT and max (vertical) indentation was measured.
DOI: 10.6084/m9.figshare.17041157.v1
title: OCT_Aurora_Tegaderm_Data File ver.3.1_Graphs.csv

description: Difference in maximum indentation between bare skin and skin with plastic form. Skin w/o plastic film was indented with mechanical indenter. The resulting skin displacement was captured using an OCT and max (vertical) indentation was measured.
DOI: 10.6084/m9.figshare.6741422.v11
title: COCI CSV dataset of all the citation data

description: This dataset contains all the citation data (in CSV format) included in COCI, released on 3 September 2021. In particular, each line of the CSV file defines a citation, and includes the following information:<b>[field "oci"]</b> the Open Citation Identifier (OCI) for the citation;<b>[field "citing"]</b> the DOI of the citing entity;<b>[field "cited"]</b> the DOI of the cited entity;<b>[field "creation"]</b> the creation date of the citation (i.e. the publication date of the citing entity);<b>[field "timespan"]</b> the time span of the citation (i.e. the interval between the publication date of the cited entity and the publication date of the citing entity);<b>[field "journal_sc"]</b> it records whether the citation is a journal self-citations (i.e. the citing and the cited entities are published in the same journal);<b>[field "author_sc"]</b> it records whether the citation is an author self-citation (i.e. the citing and the cited entities have at least one author in common).<br>This version of the dataset contains:<br>1,186,958,898 citations;69,074,291 bibliographic resources.The size of the zipped archive is 29.44 GB, while the size of the unzipped CSV file is 193.6 GB.<br>Additional information about COCI can be retrieved in the official webpage.<br>
DOI: 10.6084/m9.figshare.16699003
title: Supplementary Material for: TRPM2 thermosensitive neurons in the preoptic area involved in menopausal hot flashes in ovariectomized mice

description: Medicine
DOI: 10.6084/m9.figshare.16699003.v1
title: Supplementary Material for: TRPM2 thermosensitive neurons in the preoptic area involved in menopausal hot flashes in ovariectomized mice

description: Medicine
DOI: 10.6084/m9.figshare.11663574.v8
title: COCI Scholix dataset of all the citation data

description: This dataset contains all the citation data (in Scholix format) included in COCI, released on 3 September 2021.<br>This version of the dataset contains:<br>1,186,958,898 citations;69,074,291 bibliographic resources.The size of the zipped archive is 31.12 GB, while the size of the unzipped Scholix file is 1.06 TB.<br>Additional information about COCI can be retrieved in the official webpage.<br>
DOI: 10.6084/m9.figshare.6741446.v11
title: COCI N-Triples dataset of the provenance information of all the citation data

description: This dataset contains the provenance information (in N-Triples format) of all the citation data included in COCI, released on the 3 September 2021. In particular, any citation in the dataset includes the following provenance information:<b>[citation IRI]</b> the Open Citation Identifier (OCI) for the citation, defined in the final part of the URL identifying the citation (https://w3id.org/oc/index/coci/ci/[OCI]);;<b>[property "prov:wasAttributedTo"]</b> the IRI of the agent that have created the citation data;<b>[property "prov:hadPrimarySource"]</b> the IRI of the source dataset from where the citation data have been extracted;<b>[property "prov:generatedAtTime"]</b> the creation time of the citation data.The size of the zipped archive is 62.4 GB, while the size of the unzipped N-Triples file is 2.65 TB.<br>Additional information about COCI can be retrieved in the official webpage.