cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.13376171
title: Dyadic drumming with rhythmic distraction

description: This dataset contains MIDI and body motion data collected during an experiment investigating dyadic drumming with and without rhythmic distraction. 

Experiment design

25 pairs of adults (of which 1 pair was excluded for not following instructions) were tasked with drumming (on MIDI-enabled drums) a regular beat in synchrony with each other at a prescribed tempo (75 bpm). While drumming, they heard a metronome that they were instructed to ignore. The noise profile of the metronome was manipulated to contain long-range autocorrelations (LRC), short-range autocorrelations (SRC), or white noise (WN). The metronome's pitch was also manipulated to form a consonant (perfect 5th) or dissonant chord (diminished 5th) alongside the participants' drum tones. Each pair of participants performed 12 experimental trials with metronome manipulations and 1 baseline trial without any metronome. Data

Rhythmic stimuli. Participant dyads were randomly assigned to one of three stimulus groups. For each group, four different stimuli were generated with each type of noise (LRC, SRC, WN). This meant that dyads could play with a different stimulus in every trial and never hear the same stimulus twice. Rhythmic stimuli files comprise lists of interbeat intervals (in miliseconds), which were fed into a metronome in Max/MSP. MIDI data. We collected MIDI data showing the timing of participants' drumstrikes and metronome tones in milliseconds, along with MIDI velocity values. MIDI files contain data from all trials (including the baseline, labelled as trial "0") and details about metronome distraction conditions. 



P1.txt contains data from participants who were randomly labelled as P1

P2.txt contains data from participants who were randomly labelled as P2

Metronome.txt contains data from the metronome 


Data from a given trial and dyad can be reconstructed based on the dyad and trial labels in the files. 

Motion data. Head and hand motion data were collected with a 12-camera infrared motion capture system (Qualisys). Motion files contain 3D position data for participants P1 and P2 along with details about metronome distraction conditions.

Timestamps for MIDI and motion data. MIDI and motion data were aligned for each participant and trial by matching the sequence of MIDI interbeat intervals with the sequence of inter-strike intervals obtained from the participant's drumstick motion. Following this matching, we selected the 2-minute period with the most drumstrikes, then removed the first and last 5 seconds, resulting in 110 seconds of data. The MIDI and motion files in the uploaded dataset retain their original timestamps but have been trimmed to include only activity from this 110 second period.
DOI: 10.5281/zenodo.13376172
title: Dyadic drumming with rhythmic distraction

description: This dataset contains MIDI and body motion data collected during an experiment investigating dyadic drumming with and without rhythmic distraction. 

Experiment design

25 pairs of adults (of which 1 pair was excluded for not following instructions) were tasked with drumming (on MIDI-enabled drums) a regular beat in synchrony with each other at a prescribed tempo (75 bpm). While drumming, they heard a metronome that they were instructed to ignore. The noise profile of the metronome was manipulated to contain long-range autocorrelations (LRC), short-range autocorrelations (SRC), or white noise (WN). The metronome's pitch was also manipulated to form a consonant (perfect 5th) or dissonant chord (diminished 5th) alongside the participants' drum tones. Each pair of participants performed 12 experimental trials with metronome manipulations and 1 baseline trial without any metronome. Data

Rhythmic stimuli. Participant dyads were randomly assigned to one of three stimulus groups. For each group, four different stimuli were generated with each type of noise (LRC, SRC, WN). This meant that dyads could play with a different stimulus in every trial and never hear the same stimulus twice. Rhythmic stimuli files comprise lists of interbeat intervals (in miliseconds), which were fed into a metronome in Max/MSP. MIDI data. We collected MIDI data showing the timing of participants' drumstrikes and metronome tones in milliseconds, along with MIDI velocity values. MIDI files contain data from all trials (including the baseline, labelled as trial "0") and details about metronome distraction conditions. 



P1.txt contains data from participants who were randomly labelled as P1

P2.txt contains data from participants who were randomly labelled as P2

Metronome.txt contains data from the metronome 


Data from a given trial and dyad can be reconstructed based on the dyad and trial labels in the files. 

Motion data. Head and hand motion data were collected with a 12-camera infrared motion capture system (Qualisys). Motion files contain 3D position data for participants P1 and P2 along with details about metronome distraction conditions.

Timestamps for MIDI and motion data. MIDI and motion data were aligned for each participant and trial by matching the sequence of MIDI interbeat intervals with the sequence of inter-strike intervals obtained from the participant's drumstick motion. Following this matching, we selected the 2-minute period with the most drumstrikes, then removed the first and last 5 seconds, resulting in 110 seconds of data. The MIDI and motion files in the uploaded dataset retain their original timestamps but have been trimmed to include only activity from this 110 second period.
DOI: 10.6084/m9.figshare.17212025.v1
title: Supplementary Material for: Are Differences in Dysphagia Assessment, Oral Care Provision, or Nasogastric Tube Insertion Associated with Stroke-Associated Pneumonia? A Nationwide Survey Linked to National Stroke Registry Data

description: <b><i>Introduction:</i></b> Stroke-associated pneumonia (SAP) is a common complication associated with poor outcomes. Early dysphagia screening and specialist assessment is associated with a reduced risk of SAP. Evidence about oral care and nasogastric tube (NGT) placement is equivocal. This study aimed to expose variations in dysphagia management practices and explore their associations with SAP. <b><i>Participants and Methods:</i></b> Speech pathologists from 166 stroke units in England and Wales were surveyed about dysphagia assessment and management, oral care, and NGT placement. Survey data were then linked to the Sentinel Stroke National Audit Programme (SSNAP), the national register of stroke. Univariable and multivariable linear regression models were fitted to estimate the association between dysphagia management practices and SAP incidence. <b><i>Results:</i></b> 113 hospitals completed the survey (68%). Variation was evident in dysphagia screening protocols (DSPs), oral care, and NGT practice while specialist swallow assessment data patterns were more consistent. Multivariable analysis showed no evidence of an association in incidence of SAP when using a water-only hospital DSP compared to a multiconsistency DSP (B −0.688, 95% CI: −2.912 to 1.536), when using written swallow assessment guidelines compared to not using written guidelines (B 0.671, 95% CI: −1.567 to 2.908), when teams inserted NGTs overnight compared to teams which did not (B −0.505, 95% CI: −2.759 to 1.749), and when teams had a written oral care protocol compared to those which did not (B −1.339, 95% CI: −3.551 to 0.873). <b><i>Discussion and Conclusion:</i></b> Variation exists in dysphagia screening and management, but there was no evidence of an association between clinical practice patterns and incidence of SAP. Further research with larger sample sizes is needed to examine association with SAP.
DOI: 10.6084/m9.figshare.19187468.v1
title: Model input file

description: Model input file for Modflow 6.2
DOI: 10.6084/m9.figshare.13677100.v1
title: ModesSphereDiel_n4R75_N5.dat

description: Quasinormal modes of a dielectric nanosphere (radius 75 nm and refractive index n=4).
DOI: 10.6084/m9.figshare.18585419.v2
title: Simulation Results

description: Simulation results of Zhang et al. (2022)
DOI: 10.6084/m9.figshare.14459403.v1
title: Supplementary Material for: Risk Factors for Non-Ampullary Duodenal Adenocarcinoma: A Systematic Review

description: Medicine
DOI: 10.6084/m9.figshare.28268366.v1
title: <b>Unveiling hidden fungal diversity associated with coffee trees from China using a polyphasic approach and a global review of coffee saprobic fungi</b>

description: Arabica coffee (<i>Coffea arabica</i>) is the most cultured and popular coffee bean in today’s world. Yunnan Province is well known as China's largest arabica coffee cultivation region. Fungi represent an important group of microorganisms associated with coffee, profoundly influencing its yield and quality. In this study, twelve fungal collections growing on dead and decaying twigs of coffee were collected and isolated to systematically document microfungi associated with coffee plants in Yunnan Province. Ten novel species, each representing a unique family within Pleosporales, were identified and introduced based on comprehensive morphological analyses and multigene phylogenetic studies. The ten new species belong to the families <i>Bambusicolaceae, Didymellaceae, Didymosphaeriaceae, Longiostiolaceae, Lophiostomataceae, Massarinaceae, Neomassariaceae, Occultibambusaceae, Roussoellaceae, </i>and<i> Thyridariaceae</i> with each family containing one new species. Macro- and micro-characteristics, descriptions, and phylogenetic trees indicating the placement of the new taxa are provided. In addition, pairwise homoplasy index (PHI) test results and morphological comparisons between the new species and closely related taxa are given. This study also establishes a comprehensive global inventory of saprobic fungi associated with coffee, which is intended to help researchers and professionals worldwide with practical information. This research enhances the understanding of coffee-associated fungal diversity in China and underscores the importance of introducing new saprobic fungal taxa related to coffee.
DOI: 10.6084/m9.figshare.5960878.v1
title: QSAR classification and regression models for β-secretase inhibitors using relative distance matrices

description: The development of robust QSAR models to predict the activity of molecules of β-secretase inhibitors is an area of interest due to the increase of Alzheimer’s disease in patients in the global population. In this paper, we present a proposal based on the use of relative distance matrices as input data to the QSAR algorithms. These matrices store measurements of distances between the structural characteristics of pairs of molecules and between the molecules and a structural pattern extracted from the whole data set, thus efficiently representing a correlation between structural changes and activity. For the building of the classification and regression models support vector machine, tree complex and Gaussian process algorithms have been used; and for the validation of the models cross-validation, bootstrapping and <i>y</i>-randomizing techniques have been applied. The results obtained are close to 100% in accuracy and area under receiver operating characteristic values in classification, and close to 1.0 for <i>r</i> <sup>2</sup> and 0.1 for root mean square error in regression in training and in external validation, proving the ‘goodness’ of the proposal.
DOI: 10.6084/m9.figshare.26332933.v1
title: Data from Curated Boolean Network

description: Data from Curated Boolean NetworkWe used BoolODE to generate simulated data from curated boolean models. BoolODE converts Boolean TF-gene regulations into ODEs, which more accurately simulate biological gene regulatory networks (GRNs) and single-cell gene expression dynamics. In this method, each network node has a 'gene' variable (mRNA level) and a 'protein' variable (TF level). We added noise to the curated data using the parameter s, and performed numerical integration with the Euler–Maruyama method. BoolODE effectively transforms a boolean model into an ODE model, simulating single-cell gene expression values.BoolODE GitHub: https://murali-group.github.io/Beeline/BoolODE.htmlReference to the original paper: Pratapa, A., Jalihal, A.P., Law, J.N. <i>et al.</i> Benchmarking algorithms for gene regulatory network inference from single-cell transcriptomic data. <i>Nat Methods</i> <b>17</b>, 147–154 (2020). https://doi.org/10.1038/s41592-019-0690-6
DOI: 10.6084/m9.figshare.10229453.v1
title: virus_matrix

description: Count data for viral species.
DOI: 10.6084/m9.figshare.25858159.v1
title: <b>Atlas of Mildly and Highly Insoluble Matrisome Driving Liver Fibrosis</b>

description: <b>Atlas of Mildly and Highly Insoluble Matrisome Driving Liver Fibrosis</b>
DOI: 10.6084/m9.figshare.24121098.v2
title: <b>Spirulina Plantesis Kefir Probiotics as Anti Diabetes Functional Food</b>

description: Chronic elevation of blood sugar levels has detrimental effects on the functioning and structure of pancreatic β cells. This is primarily attributed to lipid peroxidation and changes in pro-inflammatory cytokines. Therefore, the aim of this study was to evaluate the efficacy of Spirulina platensis kefir, a probiotic, in managing diabetes and its impact on glycemic status, GLUT 4 post-receptors, and C-peptide in rats with hyperglycemia. The research involved Sprague Dawley rats with high blood sugar levels, which were randomly divided into two groups: a control group of normal rats and a group of rats with hyperglycemia. The hyperglycemic rats were further divided into three subgroups: (1) receiving standard oral hypoglycemic drugs, (2) receiving oral hypoglycemic drugs along with a standard diet, and (3) receiving 200 ml of kefir spirulina along with a standard diet for a period of 30 days. Glucose levels were measured enzymatically, while levels of GLUT-4 and C-peptide were assessed using ELISA. The collected data was analyzed using statistical tests such as Analysis of Covariance (ANCOVA), Duncan, and Mann Whitney, with a significance level set at p&lt;0.05.<br>
DOI: 10.6084/m9.figshare.28394975.v1
title: Minor effects of warming on soil microbial diversity, richness and community structure (data and code, Global Change Biology)

description: How warming affects soil microbial diversity, richness, and community structure on a global scale is still poorly understood. We conduct a meta-analysis of 945 observations from 100 publications by collecting relevant data.
DOI: 10.6084/m9.figshare.3552087.v1
title: Appendix C. Table of the best-fitted models of survival rates and recaptures probabilities; figures on the relationship between observed and known-alive resident adults, and on the relationship between population growth and the number of juveniles.

description: Table of the best-fitted models of survival rates and recaptures probabilities; figures on the relationship between observed and known-alive resident adults, and on the relationship between population growth and the number of juveniles.
DOI: 10.6084/m9.figshare.26871148.v1
title: PROOFED data table for equine postoperative complications .xlsx

description: A systematic review of the prevalence of postoperative complications after general anaesthesia in adult horses (2000 – 2023).Analysis of the most common equine postoperative complications reported in the equine veterinary literature between 2000-2023.
DOI: 10.25403/upresearchdata.19096550.v1
title: Professional scepticism: traits, individual differences and ethical orientation amongst early career accounting professionals

description: <b>This spreadsheet contains the responses from third-year accounting students and trainee accountants currently undertaking their SAICA articles. A questionnaire was used to collect information and it included three-validated scales: Hurtt (2010) professional trait scepticism scale, the Ethics Position Questionnaire from Forsyth (1980) and the Ten-item personality trait test from Gosling, Rentfrom, and Swann (2003). Questions about individual differences were also included. The questionnaire used included the question IDs so as to link together items in the questionnaire.</b><br><br><br><br><br>
DOI: 10.6084/m9.figshare.28743023.v2
title: Virus transport in density-dependent ASR

description: The data provided here include model input files and scripts used for processing model outputs and generating figures in our paper.
DOI: 10.6084/m9.figshare.22310212.v1
title: Supplementary Material for: Long sleep duration and dissatisfaction with sleep quality are associated with ischemic stroke in young patients

description: Introduction: Suboptimal sleep duration and poor sleep quality have been proposed to increase stroke risk. However, their significance in young ischemic stroke is unclear. We aimed to investigate the importance of sleep duration and quality on young ischemic stroke patients. Methods: A multicenter matched case-control study was performed to evaluate under-recognized risk factors in young (&lt;45 years) ischemic stroke patients in 8 tertiary hospitals in Korea. A total of 225 patients and 225 age- and sex-matched controls were enrolled in the same period. Detailed information about patients’ demographics, socioeconomic state, traditional and nontraditional risk factors including sleep-related factors were obtained using structured questionnaires. Risk of ischemic stroke were estimated using conditional logistic regression analysis. Results: Although average sleep duration was similar in patients and controls, patients were more likely to have long (≥ 9 hours) or extremely short (&lt; 5 hours) sleep durations. In addition, the proportion of subjects with dissatisfaction with sleep quality was higher in patients than controls (66.2% versus 49.3%, p &lt; 0.001). In multivariable conditional logistic regression analysis, long sleep duration (OR: 11.076, 95% CI: 1.819-67.446, p = 0.009) and dissatisfaction with sleep quality (OR: 2.116, 95% CI: 1.168-3.833, p = 0.013) were independently associated with risk of ischemic stroke. Discussion/Conclusions: Long sleep duration and dissatisfaction with sleep quality may be associated with increased risk of ischemic stroke in young adults. Improving sleep habit or quality could be important for reducing the risk of ischemic stroke.
DOI: 10.15468/dl.2c5sdc
title: Occurrence Download

description: A dataset containing 1323 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-0.69126 38.31764,-0.10676 38.31764,-0.10676 38.55134,-0.69126 38.55134,-0.69126 38.31764))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pinus halepensis Mill."
 ]
}

 The dataset includes 1323 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009553-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26808739.v1
title: Haplotype resolved genome assembly and annotation of S20-1

description: Haplotype resolved genome assembly and annotation of S20-1
DOI: 10.6084/m9.figshare.3523256.v1
title: Supplement 3. Data on bryophytes and vascular plants in Carpathian spring meadows.

description: File List dataHajek.zip -- zip file of the next three data files from Hájek et al. (2002) on 70 Carpathian spring meadows (all comma- separated ASCII text files).<br> <br> bryophytes.txt -- data on 30 bryophyte species (occuring 5 or more times).<br> vasc_plants.txt -- data on 123 vascular plant species (occuring 5 or more times).<br> chemistry.txt -- data on 14 water chemistry variables and slope. Description The file dataHajek.zip contains three comma-separated ASCII text files containing data from Hájek et al. (2002) used to illustrate co-correspondence analysis in the subsection <i>Bryophytes and vascular plants in Carpathian spring meadows</i>. The data consist of 70 spring meadows (sites) and a subset of species, namely those occurring five or more times. The (abbreviated) names for columns (variables) in each file are given in the first line of each file, separated by commas. Each row starts with the site name. The first 12 variables the in file chemistry.txt are concentrations and are log-transformed before the analysis in the paper.
DOI: 10.6084/m9.figshare.28602974.v1
title: Paleo-upper range limit of tree elevation from the Last Glacial Maximum (LGM) to 1950 Common Era (CE)

description: Here, we presented a high-resolution (1 km) reconstruction of paleo changes in the upper range limits of trees across the Tibetan Plateau, at 100-year intervals since the Last Glacial Maximum (~22 kyr BP). This reconstruction was developed by integrating multi-satellite-derived high-resolution map, <i>in situ</i> dendrochronological observation and paleoclimate dataset into a novel climate-driven predictive model. Each row represents a specific location with its corresponding upper range limit of trees, while columns represent temporal intervals at 100-year resolution for past 22 ka. Grid cells marked as NaN indicate areas with no trees.
DOI: 10.6084/m9.figshare.7808297.v1
title: Quantitative MR simulated signals

description: Minimal data set necessary to replicate the findings presented at the coreMRI paper published at PLOS ONE. coreMRI is the first advanced MR simulation platform delivered as a web service through an on-demand, scalable cloud-based and GPU-based infrastructure. coreMRI allows its users to exploit the highly tuned computer performance of GPUs on MR simulations with neither upfront investment for purchasing advanced computer systems nor technical programming expertise. coreMRI is available to the users through the webpage https://www.coreMRI.org.
DOI: 10.6084/m9.figshare.12986111.v3
title: Magnetoencephalography-detected phase-amplitude coupling in Parkinson's disease

description: All the files in this dataset have both data for 23 patients with Parkinson’s disease (PD) and those for 23 healthy study participants (HSP). All data are calculated from resting-state MEG signals. Here, a synchronization index (SI) is used to quantify phase–amplitude coupling for 236-s resting-state signals.<br>comodulogram_resting_data.mat contains data of SI values for various combinations of frequencies calculated on representative cortical areas. Six cortical areas on Human Connectome Project (HCP) atlas selected for the analysis are in HCP_ROI. Cortical vertices of FreeSurfer atlas belonging to the areas are in FSA_vertex. Frequencies for phase are in phs_windows. Frequencies for amplitude are in amp_windows. PD_data_FSA contains SI values (PD_data_FSA.si) and mean phase-shuffled SI values (PD_data_FSA.shuffle) calculated on selected vertices for the patients with Parkinson’s disease. PD_data_HCP contains those averaged on selected HCP areas. <br>PSD_resting_state.mat contains power spectrum density data calculated on 15,002 vertices of FreeSurfer atlas. PD_data.freq have a list of frequencies. PD_data.psd contains power spectrum density values on each vertex for each frequency for each patient. <br>power_resting_state.mat contains data of Z-scored power values on cortical areas of HCP atlas. Three frequency bands are indicated in PD_data.freq.<br>PAC_resting_state.mat contains data of SI values for alpha–gamma and beta–gamma PAC across the whole brain. PD_data.hcp_si and PD_data.hcp_shuffle contain SI values and mean phase-shuffled SI values averaged over HCP atlas, respectively. PD_data.fsa_si and PD_data.fsa_shuffle contain values on each cortical vertex of FreeSurfer atlas.<br>