cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.3526526.v1
title: Appendix C. A table showing statistical analyses of spatiotemporal variation in stage class transitions.

description: A table showing statistical analyses of spatiotemporal variation in stage class transitions.
DOI: 10.6084/m9.figshare.3526523
title: Appendix D. A figure and table showing spatiotemporal variation in reproduction.

description: A figure and table showing spatiotemporal variation in reproduction.
DOI: 10.6084/m9.figshare.3526523.v1
title: Appendix D. A figure and table showing spatiotemporal variation in reproduction.

description: A figure and table showing spatiotemporal variation in reproduction.
DOI: 10.6084/m9.figshare.3526520
title: Appendix E. A table of transition matrices, sensitivity matrices, and lambdas for each species, population, and yearly transition interval.

description: A table of transition matrices, sensitivity matrices, and lambdas for each species, population, and yearly transition interval.
DOI: 10.6084/m9.figshare.3526520.v1
title: Appendix E. A table of transition matrices, sensitivity matrices, and lambdas for each species, population, and yearly transition interval.

description: A table of transition matrices, sensitivity matrices, and lambdas for each species, population, and yearly transition interval.
DOI: 10.6084/m9.figshare.3526517
title: Appendix A. Results of repeated-measures ANOVAs for vegetation properties and performance of Senecio jacobaea.

description: Results of repeated-measures ANOVAs for vegetation properties and performance of Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526517.v1
title: Appendix A. Results of repeated-measures ANOVAs for vegetation properties and performance of Senecio jacobaea.

description: Results of repeated-measures ANOVAs for vegetation properties and performance of Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526514
title: Appendix B. Dendrogram and canonical variance analysis of bacterial PCR-DGGE patterns.

description: Dendrogram and canonical variance analysis of bacterial PCR-DGGE patterns.
DOI: 10.6084/m9.figshare.3526514.v1
title: Appendix B. Dendrogram and canonical variance analysis of bacterial PCR-DGGE patterns.

description: Dendrogram and canonical variance analysis of bacterial PCR-DGGE patterns.
DOI: 10.6084/m9.figshare.3526511
title: Appendix C. Results of an ANOVA test for the bioassay experiment.

description: Results of an ANOVA test for the bioassay experiment.
DOI: 10.6084/m9.figshare.3526511.v1
title: Appendix C. Results of an ANOVA test for the bioassay experiment.

description: Results of an ANOVA test for the bioassay experiment.
DOI: 10.6084/m9.figshare.3526508
title: Appendix D. Results of ANOVA tests for herbivore occurrence and density on Senecio jacobaea.

description: Results of ANOVA tests for herbivore occurrence and density on Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526508.v1
title: Appendix D. Results of ANOVA tests for herbivore occurrence and density on Senecio jacobaea.

description: Results of ANOVA tests for herbivore occurrence and density on Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526505
title: Appendix E. Nitrogen contents of flower, leaf, and stem tissues of Senecio jacobaea.

description: Nitrogen contents of flower, leaf, and stem tissues of Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526505.v1
title: Appendix E. Nitrogen contents of flower, leaf, and stem tissues of Senecio jacobaea.

description: Nitrogen contents of flower, leaf, and stem tissues of Senecio jacobaea.
DOI: 10.6084/m9.figshare.3526502
title: Appendix A. Measures of goodness-of-fit for wildebeest pathways from eight objective functions averaged for multiple-resolution comparisons from 5 to 50 km square blocks.

description: Measures of goodness-of-fit for wildebeest pathways from eight objective functions averaged for multiple-resolution comparisons from 5 to 50 km square blocks.
DOI: 10.6084/m9.figshare.3526502.v1
title: Appendix A. Measures of goodness-of-fit for wildebeest pathways from eight objective functions averaged for multiple-resolution comparisons from 5 to 50 km square blocks.

description: Measures of goodness-of-fit for wildebeest pathways from eight objective functions averaged for multiple-resolution comparisons from 5 to 50 km square blocks.
DOI: 10.6084/m9.figshare.3526499
title: Appendix B. Locations on the 15th of each month of wildebeest simulated in the evolutionary stage for models influenced by rainfall and new vegetation growth, as reflected in NDVI.

description: Locations on the 15th of each month of wildebeest simulated in the evolutionary stage for models influenced by rainfall and new vegetation growth, as reflected in NDVI.
DOI: 10.6084/m9.figshare.3526499.v1
title: Appendix B. Locations on the 15th of each month of wildebeest simulated in the evolutionary stage for models influenced by rainfall and new vegetation growth, as reflected in NDVI.

description: Locations on the 15th of each month of wildebeest simulated in the evolutionary stage for models influenced by rainfall and new vegetation growth, as reflected in NDVI.
DOI: 10.6084/m9.figshare.3526496
title: Appendix C. Nine wildebeest migratory pathways that evolved using average monthly surfaces in the additive model and yearly pathways refined in a learning phase.

description: Nine wildebeest migratory pathways that evolved using average monthly surfaces in the additive model and yearly pathways refined in a learning phase.
DOI: 10.6084/m9.figshare.3526496.v1
title: Appendix C. Nine wildebeest migratory pathways that evolved using average monthly surfaces in the additive model and yearly pathways refined in a learning phase.

description: Nine wildebeest migratory pathways that evolved using average monthly surfaces in the additive model and yearly pathways refined in a learning phase.
DOI: 10.6084/m9.figshare.3526493
title: Appendix A. A description of the construction of coastal zones, a figure showing construction of the coastal zones, and a figure showing stranded specimens of Rhizostoma octopus.

description: A description of the construction of coastal zones, a figure showing construction of the coastal zones, and a figure showing stranded specimens of Rhizostoma octopus.
DOI: 10.6084/m9.figshare.3526493.v1
title: Appendix A. A description of the construction of coastal zones, a figure showing construction of the coastal zones, and a figure showing stranded specimens of Rhizostoma octopus.

description: A description of the construction of coastal zones, a figure showing construction of the coastal zones, and a figure showing stranded specimens of Rhizostoma octopus.
DOI: 10.6084/m9.figshare.3526490
title: Appendix A. A description of the manipulation and measurement of flow speed.

description: A description of the manipulation and measurement of flow speed.
DOI: 10.6084/m9.figshare.3526490.v1
title: Appendix A. A description of the manipulation and measurement of flow speed.

description: A description of the manipulation and measurement of flow speed.
DOI: 10.6084/m9.figshare.3526487
title: Appendix A. Biological data employed in the analysis.

description: Biological data employed in the analysis.
DOI: 10.6084/m9.figshare.3526487.v1
title: Appendix A. Biological data employed in the analysis.

description: Biological data employed in the analysis.
DOI: 10.6084/m9.figshare.3526484
title: Supplement 1. R source code and user's guide for the implementation of the statistical test described in this paper.

description: File List cedl_scr.r - R script file<br> cedlusersguide.pdf - User's guide for functions listed in script file<br> Description The cedl_scr.r file is an R script that contains function to test obsreved point patterns against a chosen null hypothesis for both the G and K statistics, as described in the paper.
DOI: 10.6084/m9.figshare.3526481
title: Appendix A. A bibliographic list of additional data sources.

description: A bibliographic list of additional data sources.
DOI: 10.6084/m9.figshare.3526481.v1
title: Appendix A. A bibliographic list of additional data sources.

description: A bibliographic list of additional data sources.
DOI: 10.6084/m9.figshare.3526478
title: Appendix A. Life history data and model parameters for all species considered in this analysis.

description: Life history data and model parameters for all species considered in this analysis.
DOI: 10.6084/m9.figshare.3526478.v1
title: Appendix A. Life history data and model parameters for all species considered in this analysis.

description: Life history data and model parameters for all species considered in this analysis.
DOI: 10.6084/m9.figshare.3526475
title: Appendix A. Detailed methods for the chemical analysis of terpenes, phenolics, and soluble protein.

description: Detailed methods for the chemical analysis of terpenes, phenolics, and soluble protein.
DOI: 10.6084/m9.figshare.3526475.v1
title: Appendix A. Detailed methods for the chemical analysis of terpenes, phenolics, and soluble protein.

description: Detailed methods for the chemical analysis of terpenes, phenolics, and soluble protein.
DOI: 10.6084/m9.figshare.3526472
title: Appendix B. A table presenting all fixed-factor ANOVAs conducted on the growth and defense variables.

description: A table presenting all fixed-factor ANOVAs conducted on the growth and defense variables.
DOI: 10.6084/m9.figshare.3526472.v1
title: Appendix B. A table presenting all fixed-factor ANOVAs conducted on the growth and defense variables.

description: A table presenting all fixed-factor ANOVAs conducted on the growth and defense variables.
DOI: 10.6084/m9.figshare.3526469
title: Appendix C. A table presenting growth, herbivory, and defensive traits measured in the experiment for each species in the two soil types.

description: A table presenting growth, herbivory, and defensive traits measured in the experiment for each species in the two soil types.
DOI: 10.6084/m9.figshare.3526469.v1
title: Appendix C. A table presenting growth, herbivory, and defensive traits measured in the experiment for each species in the two soil types.

description: A table presenting growth, herbivory, and defensive traits measured in the experiment for each species in the two soil types.
DOI: 10.6084/m9.figshare.3526466
title: Appendix D. Figures showing the effect of origin (white-sand vs. clay specialists) and the genus×origin interaction for (a) leaf growth, (b) height growth, (c) the effect of herbivory on leaf growth (protection effect), (d) protection effect on height growth, chemical defenses (e, f, g, h, i, ,j), leaf toughness (k), and available foliar protein (l).

description: Figures showing the effect of origin (white-sand vs. clay specialists) and the genus×origin interaction for (a) leaf growth, (b) height growth, (c) the effect of herbivory on leaf growth (protection effect), (d) protection effect on height growth, chemical defenses (e, f, g, h, i, ,j), leaf toughness (k), and available foliar protein (l).
DOI: 10.6084/m9.figshare.3526466.v1
title: Appendix D. Figures showing the effect of origin (white-sand vs. clay specialists) and the genus×origin interaction for (a) leaf growth, (b) height growth, (c) the effect of herbivory on leaf growth (protection effect), (d) protection effect on height growth, chemical defenses (e, f, g, h, i, ,j), leaf toughness (k), and available foliar protein (l).

description: Figures showing the effect of origin (white-sand vs. clay specialists) and the genus×origin interaction for (a) leaf growth, (b) height growth, (c) the effect of herbivory on leaf growth (protection effect), (d) protection effect on height growth, chemical defenses (e, f, g, h, i, ,j), leaf toughness (k), and available foliar protein (l).
DOI: 10.6084/m9.figshare.3526463
title: Appendix A. Means and standard errors for seven defense-related traits of the 24 species of milkweed employed in this study.

description: Means and standard errors for seven defense-related traits of the 24 species of milkweed employed in this study.
DOI: 10.6084/m9.figshare.3526463.v1
title: Appendix A. Means and standard errors for seven defense-related traits of the 24 species of milkweed employed in this study.

description: Means and standard errors for seven defense-related traits of the 24 species of milkweed employed in this study.
DOI: 10.6084/m9.figshare.3526460
title: Appendix B. The three defense clusters separated in multivariate space.

description: The three defense clusters separated in multivariate space.
DOI: 10.6084/m9.figshare.3526460.v1
title: Appendix B. The three defense clusters separated in multivariate space.

description: The three defense clusters separated in multivariate space.
DOI: 10.6084/m9.figshare.3526457
title: Supplement 1. Supertree phylogeny files and taxonomic list.

description: File List sdlphy_phylo.new - Supertree in Newick format. sdlphy_phylo.nex - Supertree in Nexus format. sdlphy_taxa.txt - Table of taxa. Description sdlphy_phylo.new, sdlphy_phylo.nex: These files contain the supertree (in different formats) that was used to generate the results in this paper. The tree was assembled using Phylomatic megatree R20040402 (backbone derived from Peter Stevens' APweb), and branch lengths were adjusted using the BLADJ algorithm of Phylocom (Webb, Ackerly, Kembel). The tree contains internal node names, and follows standard Newick and Nexus conventions (see Maddison et al. 1997. Syst. Bio. 46:590–621). The Nexus tree opens in MacClade v4.05 and Mesquite v1.05.<br> <br> sdlphy_taxa.txt: Table of the codes used in the phylogeny files. TAB-delimined plain text; UNIX line endings; first row contains column names.
DOI: 10.6084/m9.figshare.3526457.v1
title: Supplement 1. Supertree phylogeny files and taxonomic list.

description: File List sdlphy_phylo.new - Supertree in Newick format. sdlphy_phylo.nex - Supertree in Nexus format. sdlphy_taxa.txt - Table of taxa. Description sdlphy_phylo.new, sdlphy_phylo.nex: These files contain the supertree (in different formats) that was used to generate the results in this paper. The tree was assembled using Phylomatic megatree R20040402 (backbone derived from Peter Stevens' APweb), and branch lengths were adjusted using the BLADJ algorithm of Phylocom (Webb, Ackerly, Kembel). The tree contains internal node names, and follows standard Newick and Nexus conventions (see Maddison et al. 1997. Syst. Bio. 46:590–621). The Nexus tree opens in MacClade v4.05 and Mesquite v1.05.<br> <br> sdlphy_taxa.txt: Table of the codes used in the phylogeny files. TAB-delimined plain text; UNIX line endings; first row contains column names.
DOI: 10.6084/m9.figshare.3526454
title: Appendix A. Species used in each analysis.

description: Species used in each analysis.
DOI: 10.6084/m9.figshare.3526454.v1
title: Appendix A. Species used in each analysis.

description: Species used in each analysis.
DOI: 10.6084/m9.figshare.3526451
title: Appendix B. References for phylogenetic data.

description: References for phylogenetic data.
DOI: 10.6084/m9.figshare.3526451.v1
title: Appendix B. References for phylogenetic data.

description: References for phylogenetic data.
DOI: 10.6084/m9.figshare.3526448
title: Appendix C. Phylogenetic trees used in each analysis.

description: Phylogenetic trees used in each analysis.
DOI: 10.6084/m9.figshare.3526448.v1
title: Appendix C. Phylogenetic trees used in each analysis.

description: Phylogenetic trees used in each analysis.
DOI: 10.6084/m9.figshare.3526445
title: Supplement 1. A phylogenetic tree and key to species codes for tree species occurring within the 50-ha Forest Dynamics Plot (FDP) on Barro Colorado Island, Panama.

description: File List FDP_phylogeny.new.txt<br> FDP_phylogeny_species_code_lookup_table.csv Description The file FDP_phylogeny.new.txt is an ASCII text file containing the phylogenetic tree used in this study in parenthetical Newick format. The phylogenetic tree was generated using Phylomatic tree version R20031202 software (Webb and Donoghue 2005). Internal nodes of the tree were labeled to allow node age estimation using the BLADJ module of Phylocom version 3.19 software (Webb et al. 2004). Named internal nodes were dated based on clade age estimates provided by Wikström et al. (2001). Units of the branch lengths in the phylogeny are millions of years. <br> <br> Species codes used in the phylogenetic tree file can be resolved to full species names using the lookup table presented in the comma-separated ASCII text file FDP_phylogeny_species_code_lookup_table.csv.<br> Column definitions:<br> 1 - Code - species code used in FDP_phylogeny.new.txt<br> 2 - SpeciesName - Species name corresponding to each species code.<br>
DOI: 10.6084/m9.figshare.3526445.v1
title: Supplement 1. A phylogenetic tree and key to species codes for tree species occurring within the 50-ha Forest Dynamics Plot (FDP) on Barro Colorado Island, Panama.

description: File List FDP_phylogeny.new.txt<br> FDP_phylogeny_species_code_lookup_table.csv Description The file FDP_phylogeny.new.txt is an ASCII text file containing the phylogenetic tree used in this study in parenthetical Newick format. The phylogenetic tree was generated using Phylomatic tree version R20031202 software (Webb and Donoghue 2005). Internal nodes of the tree were labeled to allow node age estimation using the BLADJ module of Phylocom version 3.19 software (Webb et al. 2004). Named internal nodes were dated based on clade age estimates provided by Wikström et al. (2001). Units of the branch lengths in the phylogeny are millions of years. <br> <br> Species codes used in the phylogenetic tree file can be resolved to full species names using the lookup table presented in the comma-separated ASCII text file FDP_phylogeny_species_code_lookup_table.csv.<br> Column definitions:<br> 1 - Code - species code used in FDP_phylogeny.new.txt<br> 2 - SpeciesName - Species name corresponding to each species code.<br>
DOI: 10.6084/m9.figshare.3526442
title: Appendix A. Geographic distributions of anuran hosts and their platyhelminth parasites in six areas in North and Central America.

description: Geographic distributions of anuran hosts and their platyhelminth parasites in six areas in North and Central America.
DOI: 10.6084/m9.figshare.3526442.v1
title: Appendix A. Geographic distributions of anuran hosts and their platyhelminth parasites in six areas in North and Central America.

description: Geographic distributions of anuran hosts and their platyhelminth parasites in six areas in North and Central America.
DOI: 10.6084/m9.figshare.3526439
title: Appendix A. A description of Euphorbiaceae phylogeny.

description: A description of Euphorbiaceae phylogeny.
DOI: 10.6084/m9.figshare.3526439.v1
title: Appendix A. A description of Euphorbiaceae phylogeny.

description: A description of Euphorbiaceae phylogeny.
DOI: 10.6084/m9.figshare.3526436
title: Appendix A. Discussion of alternative null models.

description: Discussion of alternative null models.
DOI: 10.6084/m9.figshare.3526436.v1
title: Appendix A. Discussion of alternative null models.

description: Discussion of alternative null models.
DOI: 10.6084/m9.figshare.3526433
title: Appendix B. Ceanothus occurrence matrix.

description: Ceanothus occurrence matrix.
DOI: 10.6084/m9.figshare.3526430
title: Appendix C. Ceanothus trait matrix.

description: Ceanothus trait matrix.
DOI: 10.6084/m9.figshare.3526430.v1
title: Appendix C. Ceanothus trait matrix.

description: Ceanothus trait matrix.
DOI: 10.6084/m9.figshare.3526427
title: Supplement 1. Source code for DOT test.

description: File List readme.txt - Instructions to install and run scripts<br> dot.R - main R script for DOT test<br> picfixed.R - R function required by DOT<br> trancml - awk script that runs ancml and formats output for dot.R<br> phylo - sample phylogeny file<br> traits - sample traits file<br> dot.zip - all files at once<br> Description This set of scripts, written in R and awk, together with Schluter et al.'s ancml program, will run the DOT test presented in this publication. Sample files (phylo and traits) are also provided. See readme.txt for a full description and instructions for use.
DOI: 10.6084/m9.figshare.3526427.v1
title: Supplement 1. Source code for DOT test.

description: File List readme.txt - Instructions to install and run scripts<br> dot.R - main R script for DOT test<br> picfixed.R - R function required by DOT<br> trancml - awk script that runs ancml and formats output for dot.R<br> phylo - sample phylogeny file<br> traits - sample traits file<br> dot.zip - all files at once<br> Description This set of scripts, written in R and awk, together with Schluter et al.'s ancml program, will run the DOT test presented in this publication. Sample files (phylo and traits) are also provided. See readme.txt for a full description and instructions for use.
DOI: 10.6084/m9.figshare.3526424
title: Appendix A. Alternative versions of printed Figs. 2 and 4, based on ultrametric genetic distances.

description: Alternative versions of printed Figs. 2 and 4, based on ultrametric genetic distances.
DOI: 10.6084/m9.figshare.3526424.v1
title: Appendix A. Alternative versions of printed Figs. 2 and 4, based on ultrametric genetic distances.

description: Alternative versions of printed Figs. 2 and 4, based on ultrametric genetic distances.
DOI: 10.6084/m9.figshare.3526421
title: Appendix C. Markov chains and absorption times for demography and genetics.

description: Markov chains and absorption times for demography and genetics.
DOI: 10.6084/m9.figshare.3526421.v1
title: Appendix C. Markov chains and absorption times for demography and genetics.

description: Markov chains and absorption times for demography and genetics.
DOI: 10.6084/m9.figshare.3526418
title: Supplement 1. Mathematica worksheets for calculating and plotting demo-genetic eigenvalues.

description: File List SpomAndOnePopThreeStates.nb Description The worksheets allow calculating and plotting demo-genetic eigenvalues for either one local population fluctuating among several states or a set of 2 or 3 populations exchanging migrants (SPOM model). All variables are described in the Graphs section.
DOI: 10.6084/m9.figshare.3526418.v1
title: Supplement 1. Mathematica worksheets for calculating and plotting demo-genetic eigenvalues.

description: File List SpomAndOnePopThreeStates.nb Description The worksheets allow calculating and plotting demo-genetic eigenvalues for either one local population fluctuating among several states or a set of 2 or 3 populations exchanging migrants (SPOM model). All variables are described in the Graphs section.
DOI: 10.6084/m9.figshare.3526415
title: Appendix A. Photographs depicting the field site and experimental methodologies.

description: Photographs depicting the field site and experimental methodologies.
DOI: 10.6084/m9.figshare.3526415.v1
title: Appendix A. Photographs depicting the field site and experimental methodologies.

description: Photographs depicting the field site and experimental methodologies.
DOI: 10.6084/m9.figshare.3526412
title: Appendix B. A description of the ponderosa pine bird community and analysis of ant effects on bird foraging.

description: A description of the ponderosa pine bird community and analysis of ant effects on bird foraging.
DOI: 10.6084/m9.figshare.3526412.v1
title: Appendix B. A description of the ponderosa pine bird community and analysis of ant effects on bird foraging.

description: A description of the ponderosa pine bird community and analysis of ant effects on bird foraging.
DOI: 10.6084/m9.figshare.3526409
title: Appendix C. Statistical tables for analysis of bird and ant effects on pine arthropods.

description: Statistical tables for analysis of bird and ant effects on pine arthropods.
DOI: 10.6084/m9.figshare.3526409.v1
title: Appendix C. Statistical tables for analysis of bird and ant effects on pine arthropods.

description: Statistical tables for analysis of bird and ant effects on pine arthropods.
DOI: 10.6084/m9.figshare.3526406
title: Appendix A. A description of throughfall and leachate sampling methods and analyses.

description: A description of throughfall and leachate sampling methods and analyses.
DOI: 10.6084/m9.figshare.3526406.v1
title: Appendix A. A description of throughfall and leachate sampling methods and analyses.

description: A description of throughfall and leachate sampling methods and analyses.