cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6073/pasta/011a49031b39895885298c27c7f3015e
title: Denitrification and N2O potential of streams, lakes and uplands in boreal Alaska

description: Includes: denitrification enzymatic activity (denitrate), N2O production potential, relative production of N2O (fN2O), AFDM, extractable, stream water and pore water NO3, NH4, DOC, thaw depth of upland sites, bulk density. A warming climate causes permafrost to thaw, especially in the region of discontinuous permafrost, where soil temperatures may only be a few degrees below 0 degC. Permafrost thaw may be exacerbated by more frequent and severe fires that remove insulating organic layers above permafrost. Soil thaw releases carbon and nitrogen (N) into the actively cycling pools, and whereas carbon emissions following permafrost thaw are well documented, the fates of N remain unclear. Denitrification could release thawed N as nitrous oxide (N2O) or nitrogen gas (N2), but the contributions of these processes to the high-latitude N cycle remain uncertain. We quantified microbial capacity for denitrification and N2O production in boreal soils, lakes, and streams, and assessed correlates of denitrifying enzyme activity (DEA) in Interior Alaska. Across all landscape positions, DEA under anoxia and nitrate and organic carbon amendment was 4.15 microgram N2O-N /kg dry soil*h (range -6.39 to 479.94). Riparian soils and stream sediments supported the highest potential rates of denitrification, upland soils were intermediate, and lakes supported lower rates, whereas deep permafrost soils supported little denitrification. Time-since-fire had no effect on denitrification potential in upland soils. Across all landscape positions, DEA was negatively correlated with ammonium pools. Within each landscape position, potential rate of denitrification increased with soil or sediment organic matter content. Widespread N loss to denitrification in the boreal forest could constrain the capacity for N-limited primary producers to maintain carbon stocks in soils following permafrost thaw.
DOI: 10.5281/zenodo.5294124
title: DATASET: Package data for msdbook

description: The zipped file `msdbook_package_data.zip` contains pre-calculated data which can be generated from the tutorial notebooks here: https://github.com/IMMM-SFA/msd_uncertainty_ebook These data are for illustrative purposes only and should not be used for research objectives.
DOI: 10.5281/zenodo.5294123
title: DATASET: Package data for msdbook

description: The zipped file `msdbook_package_data.zip` contains pre-calculated data which can be generated from the tutorial notebooks here: https://github.com/IMMM-SFA/msd_uncertainty_ebook These data are for illustrative purposes only and should not be used for research objectives.
DOI: 10.5517/ccdc.csd.cc28jj3g
title: CCDC 2101245: Experimental Crystal Structure Determination

description: Related Article: M.T. Whited, M.A. Ball, A. Block, B.A. Brewster, L.L. Ferrer, H.J. Jin-Lee, C.J. King, J.D. North, I.L. Shelton, D.G. Wilson|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|912|doi:10.1107/S2056989021008008
DOI: 10.6084/m9.figshare.13543019
title: Risk perception, susceptibility and perceived severity among the Brazilian population

description: <pre>Data collected to analyze the risk perception and fear of the Covid-19 pandemic.</pre>
DOI: 10.6084/m9.figshare.13543019.v2
title: Risk perception, susceptibility and perceived severity among the Brazilian population

description: <pre>Data collected to analyze the risk perception and fear of the Covid-19 pandemic.</pre>
DOI: 10.6084/m9.figshare.13543019.v1
title: Risk perception, susceptibility and perceived severity among the Brazilian population

description: <pre>Data collected to analyze the risk perception and fear of the Covid-19 pandemic.</pre>
DOI: 10.15468/y8apvq
title: Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Leblanc, Luc, Tsatsia, Francis, Doorenweerd, Camiel (2021): Novel lures and COI sequences reveal cryptic new species of Bactrocera fruit flies in the Solomon Islands (Diptera, Tephritidae, Dacini). ZooKeys 1057: 49-103, DOI: http://dx.doi.org/10.3897/zookeys.1057.68375, URL: http://dx.doi.org/10.3897/zookeys.1057.68375
DOI: 10.15468/6gxu74
title: Synorthocladius federicoi sp. nov., a new species occurring in the middle basin of the Adige River, northern Italy (Diptera, Chironomidae, Orthocladiinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lencioni, Valeria, Moubayed, Joel (2021): Synorthocladius federicoi sp. nov., a new species occurring in the middle basin of the Adige River, northern Italy (Diptera, Chironomidae, Orthocladiinae). ZooKeys 1057: 105-116, DOI: http://dx.doi.org/10.3897/zookeys.1057.68175, URL: http://dx.doi.org/10.3897/zookeys.1057.68175
DOI: 10.15468/pf35jw
title: Pterocryptis subrisa, a new silurid catfish (Teleostei: Siluridae) from northeastern India

description: This dataset contains the digitized treatments in Plazi based on the original journal article Ng, Heok Hee, Lalronunga, Samuel (2018): Pterocryptis subrisa, a new silurid catfish (Teleostei: Siluridae) from northeastern India. Zootaxa 4500 (1): 126-134, DOI: https://doi.org/10.11646/zootaxa.4500.1.8
DOI: 10.15468/qez7ua
title: Diversity of Armenian mayflies (Ephemeroptera) with the description of a new species of the genus Ecdyonurus (Heptageniidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Hrivniak, Ľuboš, Sroka, Pavel, Godunko, Roman J., Palatov, Dmitry, Polášek, Marek, Manko, Peter, Oboňa, Jozef (2018): Diversity of Armenian mayflies (Ephemeroptera) with the description of a new species of the genus Ecdyonurus (Heptageniidae). Zootaxa 4500 (2): 195-221, DOI: https://doi.org/10.11646/zootaxa.4500.2.3
DOI: 10.5281/zenodo.5248364
title: The TELPERION Survey for Distant [O III] Clouds Around Luminous and Hibernating AGN

description: The collection includes the FITS files of newly-obtained data used for the study “The TELPERION Survey for Distant [O III] Clouds Around Luminous and Hibernating AGN” by William C. Keel et al., submitted to Monthly Notices of the Royal Astronomical Society. Zip files for objects in the VCV sample (and the best-observed in the Toomre merger <br> sample) use object names as in the tablesin the manuscript. File names use these conventions:<br> Suffix o3.fits : narrowband F510 filter including redshifted [O III] emission<br> Suffix o3co.fits: as above with WCS information from the astrometry.net web service<br> Suffix v.fits: in the Johnson V band<br> Suffix vco.fits: V band, with WCS coordinate metadata<br> Suffix v2o3.fits: V image resampled to the same WCS coordinate grid as the F510 image, when the two are from different cameras and not related by a simple shift.<br> vscale.fits: resampled V image scaled for continuum subtraction from the F510 data.<br> vs.fits: as above, with small shifts accounting for asymmetric point-spread functions (PSFs).<br> vg.fits, vsg.fits: as above images, with Gaussian blur for first-order accounting of PSF differences.<br> diff.fits - difference image nominally representing pure [O III] emission. There may be a version numberb(diff2, diff3) if multiple iterations were done. These may also have names such as diff2g.fits, diff1s.fits if Gaussian blur or small shifts were done as for vs.fits, vsg.fits files. "flat" denotes that a low-pass spatial filter (such as a large median) has been used to reduce the effects of stray light on a difference image. Toomre.zip includes F510 and V images for those galaxies in the Toomre-sequence sample not included in the SARA data. LongSlit.zip includes reduced two-dimensional spectral data as detailed in the paper. _abs indicates that the data values are calibrated to intensity units (ergs/(cm^2 s Angstrom)) using standard-star observations; otherwise they are in instrumental units. Wavelengths are in Angstroms, in air. Data using the ADAM instrument are prefixed with that string. Tunable.zip includes the results of the MaNGAL and SCORPIO tunable-filter observations. The string “5007net” denotes that the continuum (“cont”) has been subtracted; “5007” by itself marks images including the [O III] line but not yet continuum-subtracted.
DOI: 10.5281/zenodo.5248363
title: The TELPERION Survey for Distant [O III] Clouds Around Luminous and Hibernating AGN

description: The collection includes the FITS files of newly-obtained data used for the study “The TELPERION Survey for Distant [O III] Clouds Around Luminous and Hibernating AGN” by William C. Keel et al., submitted to Monthly Notices of the Royal Astronomical Society. Zip files for objects in the VCV sample (and the best-observed in the Toomre merger <br> sample) use object names as in the tablesin the manuscript. File names use these conventions:<br> Suffix o3.fits : narrowband F510 filter including redshifted [O III] emission<br> Suffix o3co.fits: as above with WCS information from the astrometry.net web service<br> Suffix v.fits: in the Johnson V band<br> Suffix vco.fits: V band, with WCS coordinate metadata<br> Suffix v2o3.fits: V image resampled to the same WCS coordinate grid as the F510 image, when the two are from different cameras and not related by a simple shift.<br> vscale.fits: resampled V image scaled for continuum subtraction from the F510 data.<br> vs.fits: as above, with small shifts accounting for asymmetric point-spread functions (PSFs).<br> vg.fits, vsg.fits: as above images, with Gaussian blur for first-order accounting of PSF differences.<br> diff.fits - difference image nominally representing pure [O III] emission. There may be a version numberb(diff2, diff3) if multiple iterations were done. These may also have names such as diff2g.fits, diff1s.fits if Gaussian blur or small shifts were done as for vs.fits, vsg.fits files. "flat" denotes that a low-pass spatial filter (such as a large median) has been used to reduce the effects of stray light on a difference image. Toomre.zip includes F510 and V images for those galaxies in the Toomre-sequence sample not included in the SARA data. LongSlit.zip includes reduced two-dimensional spectral data as detailed in the paper. _abs indicates that the data values are calibrated to intensity units (ergs/(cm^2 s Angstrom)) using standard-star observations; otherwise they are in instrumental units. Wavelengths are in Angstroms, in air. Data using the ADAM instrument are prefixed with that string. Tunable.zip includes the results of the MaNGAL and SCORPIO tunable-filter observations. The string “5007net” denotes that the continuum (“cont”) has been subtracted; “5007” by itself marks images including the [O III] line but not yet continuum-subtracted.
DOI: 10.5281/zenodo.5218498
title: Testing nauyaca: mock catalog and results

description: Dataset associated with the paper "Nauyaca: a new tool to determine planetary masses and orbital elements through transit timing analysis". It includes the mock catalog of planetary systems and the results of the optimization and MCMC routines.
DOI: 10.5281/zenodo.4719072
title: Testing nauyaca: mock catalog and results

description: Dataset associated with the paper "Nauyaca: a new tool to determine planetary masses and orbital elements through transit timing analysis". It includes the mock catalog of planetary systems and the results of the optimization and MCMC routines.
DOI: 10.15472/qvrulo
title: Listado de las especies de Ceutorhynchinae (Coleoptera: Curculionidae) de Colombia

description: Este recurso presenta el listado de las especies de la subfamilia Ceutorhynchinae (Coleoptera: Curculionidae) con ocurrencia conocida para el territorio colombiano. Se listan una subfamilia, dos tribus, cinco géneros y ocho especies. Cinco especies son consideradas endémicas. La información ha sido recopilada a partir de información disponible en Wibmer y O'Brien (1986) y en literatura reciente incluyendo Colonelli (2004). Se incluyen las referencias de todas las descripciones originales y de los trabajos de revisión taxonómica.
DOI: 10.15468/tejyrj
title: New Zealand Austrophthiracarus (Acari, Oribatida, Steganacaridae): two new species from the North Island

description: This dataset contains the digitized treatments in Plazi based on the original journal article Liu, Dong, Zhang, Zhi-Qiang (2018): New Zealand Austrophthiracarus (Acari, Oribatida, Steganacaridae): two new species from the North Island. Zootaxa 4500 (3): 443-450, DOI: https://doi.org/10.11646/zootaxa.4500.3.10
DOI: 10.15468/c787tr
title: Discovery of Lymantini weevils (Coleoptera: Curculionidae: Molytinae) outside the Americas: Devernodes, a new genus for five new species from Southeast Asia

description: This dataset contains the digitized treatments in Plazi based on the original journal article Grebennikov, Vasily V. (2018): Discovery of Lymantini weevils (Coleoptera: Curculionidae: Molytinae) outside the Americas: Devernodes, a new genus for five new species from Southeast Asia. Zootaxa 4500 (3): 363-380, DOI: https://doi.org/10.11646/zootaxa.4500.3.4
DOI: 10.25345/c52k1c
title: MassIVE MSV000088029 - GNPS - Dataset Creation from GNPS Molcular Networking - 23936bd1cd4a4ac8875c4a4ebf0d08e5
title: The marine-facultative Aspergillus sp. MEXU 27854, isolated from the Caleta Bay in Acapulco, Guerrero, Mexico, has provided an interesting diversity of secondary metabolites, including a series of rare dioxomorpholines, peptides and butyrolactones. Here, we report on the genomic data which consists of 11 contings (N50 ~3.95 Mb) with a ~30.75 Mb the total length of assembly. The genome annotation resulted in the prediction of 10,822 putative genes. Functional annotation was accomplished by BLAST searching protein sequences with different public databases. Of the pre-dicted genes, 75% were assigned gene ontology terms, and from the 67 BGCs identified, ~60% belong to the NRPS and NRPS-like classes. Putative BGCs for the dioxomorpholines and other metabolites were predicted by extensive genome mining. In addition, metabolomic molecular networking analysis allowed to annotate all isolated compounds and revealed the biosynthetic potential of this fungus. This work represents the first report of whole-genome sequencing and annotation from a marine-facultative fungal strain isolated from Mexico.
DOI: 10.6084/m9.figshare.14771062
title: Estimates of internal loading of phosphorus in a western US reservoir using 3 methods

description: Burnet SH, Wilhelm FM. 2021. Estimates of internal loading of phosphorus in a western US reservoir using 3 methods. Lake Reserv Manage. 37:261–274. We used 3 methods to estimate internal loading of total and dissolved phosphorus (TP/DP) in 2 years in a stratified eutrophic western US reservoir with high internal loading of phosphorus. We calculated the internal load from (i) net increases of TP/DP from reservoir water column samples, (ii) gross TP mass balances, and (iii) gross TP/DP loading estimated from laboratory-incubated sediment cores and the anoxic reservoir area. We also present a cost comparison and spreadsheet to allow managers to estimate costs for each method. The highest internal loads were estimated in 2015 from the net in situ samples (999 mg/m<sup>2</sup>/yr) and the gross annual mass balance (850 mg/m<sup>2</sup>/yr). Gross estimates from sediment cores were 1.2× higher in 2015 than in 2014 due to differences in anoxic area resulting from a drought and record reservoir drawdown. Costs were highest for the mass balance method and lowest for the sediment core method. Given the small monetary difference between the sediment core and in situ methods, we suggest managers obtain in situ data to estimate internal loading because this yields a net estimate most reflective of whole-lake dynamics. Our data provide an important benchmark of internal loading in a human-made reservoir given the general paucity of such estimates in this large geographic region.
DOI: 10.6084/m9.figshare.15157263
title: GPS Coordinates of 18,482 Crop Fields in East Africa with Improved Accuracy using Planet Imagery and Yolo v5 Object Detection Model

description: Georeferenced crop yield prediction is a valuable tool for agronomists and policymakers. One challenge with many existing datasets is that of location accuracy. GPS locations for fields can end up offset from the true location due to sensor inaccuracies or from locations being collected at the edges of fields rather than the field centers. This makes it harder to connect remote-sensed data to the yield values. The goal of this project was to produce a method that can help correct these location offsets by finding the most probable field center given an input location. We prepared and hosted a competition on Zindi (https://zindi.africa) where competitors model the problem using state-of-the-art data science techniques. We provided the competitors with satellite images of fields along with their corresponding manually annotated correct centers. Additionally, we also provided approximate plot size and measured yield in case these help with creating their solutions. Original positions are considered images' centers as (0,0) and a displacement vector for each field in the training set was provided. The goal of the competition was to predict these vectors for each vector in the test set. This dataset includes the locations of 18,481 crop fields across Kenya, Tanzania, and Rwanda, collected in 2016-2017 with mixed qualities and their error-corrected ones from the winning solution using Planet satellite imagery and the Yolo v5 object detection model.<br> <br>
DOI: 10.5281/zenodo.5095200
title: Data and analyses for journal article "Does brief FA and OM meditation affect the attentional blink?"

description: Data for journal article "Does brief FA and OM meditation affect the attentional blink?".
DOI: 10.5281/zenodo.5095199
title: Data and analyses for journal article "Does brief FA and OM meditation affect the attentional blink?"

description: Data for journal article "Does brief FA and OM meditation affect the attentional blink?".
DOI: 10.5281/zenodo.5294975
title: distribution shift dataset for Java

description: This is a dataset for studying distribution shift under programming language.
DOI: 10.5281/zenodo.5294974
title: distribution shift dataset for Java

description: This is a dataset for studying distribution shift under programming language.
DOI: 10.26078/nkdt-t278
title: Supplementary files for "Creating a Universal Depth-To-Load Conversion Technique for the Conterminous United States using Random Forests"

description: As part of an ongoing effort to update the ground snow load maps in the 
   United States, this paper presents an investigation into snow densities 
   for the purpose of predicting ground snow loads for structural engineering 
   design with ASCE 7. Despite their importance, direct measurements of snow 
   load are sparse when compared to measurements of snow depth. As a result, 
   it is often necessary to estimate snow load using snow depth and other 
   readily accessible climate variables. Existing depth-to-load conversion 
   methods, each of varying complexity, are well suited for snow load 
   estimation for a particular region or station network, but none are 
   consistently effective across regions and station networks. This paper 
   proposes a random forests regression model for estimating annual maximum 
   snow loads in the conterminous United States that makes use of climate 
   reanalysis data and overcomes the limitations of existing methods. 
   The effectiveness of the random forest model is demonstrated through 
   accuracy comparisons of existing depth-to-load conversion techniques 
   using a compilation of national and state-level data sources. The accuracy 
   comparisons show that the random forest model is competitive for all regions 
   and station networks, while other methods are competitive for only certain 
   regions or station networks. These results highlight the feasibility of 
   developing a single depth-to-load conversion method that appropriately 
   characterizes region and climate specific differences in the snow 
   depth/load relationship across the conterminous United States. 
   Such universal models are an essential component for creating a unified set 
   of national snow load requirements that eliminate the case study regions 
   currently defined in ASCE 7.
DOI: 10.6084/m9.figshare.15078294
title: Appropriate exercise level-gut dysbiosis-neuroplasticity and cognitive function after surgery in mice

description: RNA-seq analysis data. Surgery and exercise altered the profiles of mRNA expression in the hippocampus of mice.C: control, S: surgery, ES: exercise plus surgery.
DOI: 10.6084/m9.figshare.15078294.v1
title: Appropriate exercise level-gut dysbiosis-neuroplasticity and cognitive function after surgery in mice

description: RNA-seq analysis data. Surgery and exercise altered the profiles of mRNA expression in the hippocampus of mice.C: control, S: surgery, ES: exercise plus surgery.
DOI: 10.5281/zenodo.5294981
title: Registros, Fundações e Ereções de Vilas MA

description: Dados das vilas e lugares indígenas do Maranhão pombalino.
DOI: 10.5281/zenodo.5294980
title: Registros, Fundações e Ereções de Vilas MA

description: Dados das vilas e lugares indígenas do Maranhão pombalino.
DOI: 10.6084/m9.figshare.16527957
title: all_data_castaneum_crash.csv

description: Data for the paper "A general explanation for unexpected population crashes in a constant environment"<br>
DOI: 10.6084/m9.figshare.16527957.v1
title: all_data_castaneum_crash.csv

description: Data for the paper "A general explanation for unexpected population crashes in a constant environment"<br>
DOI: 10.5281/zenodo.5294902
title: Results files for "End-to-end Bayesian analysis for summarizing sets of radiocarbon dates"

description: These are the results files for the following peer-reviewed article: Price, M.H., J.M. Capriles, J. Hoggarth, R.K. Bocinsky, C.E. Ebert, and J.H. Jones, (2021). End-to-end Bayesian analysis for summarizing sets of radiocarbon dates. Journal of Archaeological Science. They were generated inside a Docker container as outlined in the README of this github repository: https://github.com/MichaelHoltonPrice/price_et_al_tikal_rc The analyses rely on an R package located in this github repository: https://github.com/eehh-stanford/baydem For the results archived here, the commits for each repository are: <pre>price_et_al_tikal_rc 3ac1e35f4277ef878f8e3aac3d05159928a09a2b baydem 1220a60a860633b51f9f07cbff3eb78f458efc1a</pre>
DOI: 10.5281/zenodo.5294901
title: Results files for "End-to-end Bayesian analysis for summarizing sets of radiocarbon dates"

description: These are the results files for the following peer-reviewed article: Price, M.H., J.M. Capriles, J. Hoggarth, R.K. Bocinsky, C.E. Ebert, and J.H. Jones, (2021). End-to-end Bayesian analysis for summarizing sets of radiocarbon dates. Journal of Archaeological Science. They were generated inside a Docker container as outlined in the README of this github repository: https://github.com/MichaelHoltonPrice/price_et_al_tikal_rc The analyses rely on an R package located in this github repository: https://github.com/eehh-stanford/baydem For the results archived here, the commits for each repository are: <pre>price_et_al_tikal_rc 3ac1e35f4277ef878f8e3aac3d05159928a09a2b baydem 1220a60a860633b51f9f07cbff3eb78f458efc1a</pre>
DOI: 10.5517/ccdc.csd.cc28jj4h
title: CCDC 2101246: Experimental Crystal Structure Determination

description: Related Article: M.T. Whited, M.A. Ball, A. Block, B.A. Brewster, L.L. Ferrer, H.J. Jin-Lee, C.J. King, J.D. North, I.L. Shelton, D.G. Wilson|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|912|doi:10.1107/S2056989021008008
DOI: 10.5517/ccdc.csd.cc28jrf0
title: CCDC 2101472: Experimental Crystal Structure Determination

description: Related Article: R. Sghyar, O. Moussaoui, N.K. Sebbar, Y. Ait Elmachkouri, E. Irrou, T. Hökelek, J.T. Mague, A. Bentama, E.M. El hadrami|2021|Acta Crystallogr.,Sect.E:Cryst.Commun.|77|875|doi:10.1107/S2056989021008033