cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.cfktuw
title: Occurrence Download

description: A dataset containing 3145 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "PublishingCountry is Colombia",
 {
 "and" : [
 "Country is Colombia",
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 }
 ]
 },
 {
 "and" : [
 "StateProvince is one of (la guajira, guajira)",
 "Country is one of (Colombia)",
 "Continent is one of (South America)",
 "TaxonKey is one of (Aves)",
 "SamplingProtocol is one of (red, red de niebla, observación, punto de conteo, transecto, observación ad hoc, puntos de conteo, recorridos libres, censos visuales y auditivos, censos en transectos y/o puntos, auditivo/visual, radio de punto fijo, ebird - traveling count, redes de niebla, punto fijo, punto de conteo; red de niebla, muestreo ves, observación directa, puntoradiofijo, puntos (conteo visual y auditivo), muestreo por distancia con puntos de conteo, puntos de de conteo fijos con radio de 50 metros, búsqueda por encuentros visuales, punto y transecto de observación, registro de aves por observación puntual, transecto de observación, red d, redes, avistamiento directo de aves, puntos de conteo; red de niebla, rede de niebla, observacion ad hoc, muestreos visuales)"
 ]
 }
 ]
}

 The dataset includes 3145 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0069636-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7mh2ir
title: Occurrence Download

description: A dataset containing 7767 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Crotalus viridis Rafinesque, 1818"
 ]
}

 The dataset includes 7767 records from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015116-181003121212138/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wgxhpx
title: Occurrence Download

description: A dataset containing 461 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Stenactis annua (L.) Nees"
 ]
}

 The dataset includes 461 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0073016-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j3kkfv
title: Occurrence Download

description: A dataset containing 899407 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Waarnemingen.be - Butterfly occurrences in Flanders and the Brussels Capital Region, Belgium"
 ]
}

 The dataset includes 899407 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015118-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7a4guv
title: Occurrence Download

description: A dataset containing 44692 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Geranium lucidum L."
 ]
}

 The dataset includes 44692 records from 403 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082393-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4vwj3q
title: Occurrence Download

description: A dataset containing 256 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spondylus candidus Lamarck, 1819"
 ]
}

 The dataset includes 256 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109297-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cnjeqp
title: Occurrence Download

description: A dataset containing 62393 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Belgium",
 "TaxonKey is one of (Aponogeton distachyos L.f., Cabomba caroliniana A.Gray, Cherax destructor Clark, 1936, Crassula helmsii (Kirk) Cockayne, Egeria densa Planch., Erythranthe guttata (DC.) G.L.Nesom, Faxonius immunis (Hagen, 1870), Faxonius juvenilis (Hagen, 1870), Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Heracleum mantegazzianum Sommier & Levier, Heracleum persicum Desf., Heracleum sosnowskyi Manden., Houttuynia cordata Thunb., Hydrocotyle ranunculoides L.f., Impatiens glandulifera Royle, Koenigia polystachya (Wall. ex Meisn.) T.M.Schust. & Reveal, Lagarosiphon major (Ridl.) Moss, Ludwigia grandiflora (Michx.) Greuter & Burdet, Ludwigia peploides (Kunth) P.H.Raven, Lysichiton americanus Hultén & H.St.John, Myriophyllum aquaticum (Vell.) Verdc., Myriophyllum heterophyllum Michx., Petasites japonicus (Siebold & Zucc.) Maxim., Pontederia cordata L., Procambarus acutus (Girard, 1852), Procambarus clarkii (Girard, 1852), Procambarus virginalis Lyko, 2017, Saururus cernuus L., Zizania latifolia (Griseb.) Stapf)",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 62393 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036789-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4mm8xz
title: Occurrence Download

description: A dataset containing 142 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caecum orcutti Dall, 1885"
 ]
}

 The dataset includes 142 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080252-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ysg4ym
title: Occurrence Download

description: A dataset containing 18 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caecum planum de Folin, 1874"
 ]
}

 The dataset includes 18 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080257-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.frdh8d
title: Occurrence Download

description: A dataset containing 536 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spondylus sinensis Schreibers, 1793"
 ]
}

 The dataset includes 536 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0109341-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zap7wd
title: Occurrence Download

description: A dataset containing 5620 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Dichoropetalum carvifolia (Vill.) Pimenov & Kljuykov"
 ]
}

 The dataset includes 5620 records from 94 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036785-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c76uwu
title: Occurrence Download

description: A dataset containing 502 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Erechtites hieracifolia (L.) Raf."
 ]
}

 The dataset includes 502 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0128727-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.czyu4r
title: Occurrence Download

description: A dataset containing 731 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Chile",
 "Geometry POLYGON((-75.42239 -56.71839,-64.32106 -56.71839,-64.32106 -17.47275,-75.42239 -17.47275,-75.42239 -56.71839))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Dromiciops gliroides Thomas, 1894",
 "Year 2000-2022"
 ]
}

 The dataset includes 731 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080243-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mpxcuf
title: Occurrence Download

description: A dataset containing 16054 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Pipistrellus kuhlii (Kuhl, 1817)"
 ]
}

 The dataset includes 16054 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036795-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p8xr7q
title: Occurrence Download

description: A dataset containing 139446 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "Continent is Europe",
 "Year is greater than 1978",
 "Year is less than 2014",
 "HasGeospatialIssue is false",
 "TaxonKey is Nucifraga caryocatactes (Linnaeus, 1758)"
 ]
}

 The dataset includes 139446 records from 143 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036815-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnk3nm
title: Occurrence Download

description: A dataset containing 433 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON ((-122.4730993000000012 37.7342838000000000, -122.4730993000000012 37.7355171900000030, -122.4730993000000012 37.7376044600000000, -122.4730993000000012 37.7388378500000030, -122.4730993000000012 37.7407353700000030, -122.4730993000000012 37.7421585100000030, -122.4730993000000012 37.7437714000000000, -122.4707240500000012 37.7437714000000000, -122.4681586199999970 37.7437714000000000, -122.4668283999999971 37.7437714000000000, -122.4648330699999974 37.7437714000000000, -122.4628377399999977 37.7437714000000000, -122.4602723099999935 37.7437714000000000, -122.4587522000000064 37.7437714000000000, -122.4587522000000064 37.7429175199999989, -122.4587522000000064 37.7412097500000030, -122.4587522000000064 37.7394071000000011, -122.4587522000000064 37.7383634700000030, -122.4587522000000064 37.7363710699999970, -122.4587522000000064 37.7342838000000000, -122.4613174899999990 37.7342838000000000, -122.4635978599999930 37.7342838000000000, -122.4657832299999995 37.7342838000000000, -122.4682536400000004 37.7342838000000000, -122.4702489700000001 37.7342838000000000, -122.4714841699999965 37.7342838000000000, -122.4730993000000012 37.7342838000000000))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1932",
 "BasisOfRecord is one of (Human Observation, Living Specimen, Observation, Specimen, Machine Observation)"
 ]
}

 The dataset includes 433 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080316-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nqs6cs
title: Occurrence Download

description: A dataset containing 89 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Cochliomyia hominivorax (Coquerel, 1858)"
 ]
}

 The dataset includes 89 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008430-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h5h9tg
title: Occurrence Download

description: A dataset containing 954172 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Belgium, Germany, Netherlands)",
 "TaxonKey is one of (Ondatra zibethicus (Linnaeus, 1766), Myocastor coypus (Molina, 1782))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 954172 records from 71 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036790-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xgjskk
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Caecum neocaledonicum de Folin, 1868"
 ]
}

 The dataset includes 70 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0080240-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.u9t5uj
title: Occurrence Download

description: A dataset containing 20492083 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "Year 2010-2024"
 ]
}

 The dataset includes 20492083 records from 1177 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0008420-240425142415019/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15156/bio/sh0202517.10fu
title: SH0202517.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.3886/e242954
title: Spiritan University, Nneochi Abia State 2026/27 JUPEB/IJMB Form is out ☎️(08039478772) DR MERCY☎️ (+23408039478772) Direct-Entry Form, Transfer Form, Change of institution form, Change of Course form, Post graduate Diploma form

description: Spiritan University, Nneochi Abia State 2026/27 JUPEB/IJMB Form is out ☎️(08039478772) DR MERCY☎️ (+23408039478772) Direct-Entry Form, Transfer Form, Change of institution form, Change of Course form, Post graduate Diploma form, Masters form, Phd form call ☎️(+23408039478772) for more inquiry and admission assistance.
DOI: 10.15156/bio/sh0202518.10fu
title: SH0202518.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202519.10fu
title: SH0202519.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202520.10fu
title: SH0202520.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.5281/zenodo.18099594
title: FREEDA genome assemblies (NCBI GenBank) - Primates - Reference genome

description: DescriptionThis record provides a curated snapshot of public NCBI GenBank genome assembly FASTA files used as reference inputs for the FREEDA pipeline. Assemblies are redistributed unchanged for convenience and reproducibility.

Provenance and identifiers: Each genome is identified by its NCBI GenBank assembly accession and version as listed in FREEDA_genomes.xlsx, along with the corresponding NCBI Assembly URLs. Users should cite the original genome resources via their accessions and any associated primary publications.

Rights note: NCBI places no restrictions on the use or distribution of GenBank molecular data, but notes that some original submitters (or countries of origin) may assert patent/copyright/other IP claims in portions of submitted data; users are responsible for compliance where applicable.

Related work: This dataset supports the FREEDA pipeline described in: https://doi.org/10.1083/jcb.202212084 (added under “Related works”).
DOI: 10.5281/zenodo.18099595
title: FREEDA genome assemblies (NCBI GenBank) - Primates - Reference genome

description: DescriptionThis record provides a curated snapshot of public NCBI GenBank genome assembly FASTA files used as reference inputs for the FREEDA pipeline. Assemblies are redistributed unchanged for convenience and reproducibility.

Provenance and identifiers: Each genome is identified by its NCBI GenBank assembly accession and version as listed in FREEDA_genomes.xlsx, along with the corresponding NCBI Assembly URLs. Users should cite the original genome resources via their accessions and any associated primary publications.

Rights note: NCBI places no restrictions on the use or distribution of GenBank molecular data, but notes that some original submitters (or countries of origin) may assert patent/copyright/other IP claims in portions of submitted data; users are responsible for compliance where applicable.

Related work: This dataset supports the FREEDA pipeline described in: https://doi.org/10.1083/jcb.202212084 (added under “Related works”).
DOI: 10.15156/bio/sh0202521.10fu
title: SH0202521.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh0202522.10fu
title: SH0202522.10FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.