cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/94ztxrz6vy
title: Tactile-Based Robotic Peg Extraction Dataset

description: This dataset provides robotic and tactile sensor data captured using two multi-modal tactile sensing (BioIn-Tacto [1, 2]) modules mounted on the end-effector of an OpenManipulator X. The sensor includes barometric and MARG (Magnetic, Angular Rate, and Gravity) data to support research in tactile manipulation. The dataset was collected in teleoperation experiments involving the extraction of differently shaped pegs from a base with holes using a robotic manipulator arm. The total number of extraction episodes in the dataset is 96. The dataset also includes Reinforcement Learning pre-trained data. The dataset can be used to pre-train a reinforcement learning model to perform peg-in-hole tasks and to study how pre-training affects a manipulator’s ability to infer tactile signals and improve success rates of the manipulator. 

The data is organized into folders representing each object runs:

Data/
 └RL/
 │ └Object&lt;1|2|3|&gt;
 │ └recordstep__object&lt;1|2|3&gt;_pretained_.csv
 └Teleop/
 ├csv2dataframe.py
 ├README.md
 └──csv/
 └Object&lt;1|2|3|&gt;/
 └robot_O&lt;1|2|3&gt;_T_A&lt;0|45|90|135|180&gt;_/
 ├imu1_data_raw.csv
 ├imu1_mag.csv
 ├imu2_data_raw.csv
 ├imu2_mag.csv
 ├imu_data1.csv
 ├imu_data2.csv
 ├joint_states.csv
 ├m_baros_serial1.csv
 ├m_baros_serial2.csv
 ├pressure_viz_left.csv
 ├pressure_viz_right.csv
 ├raw_barometers_teensy1.csv
 ├raw_barometers_teensy2.csv
 ├raw_imu_teensy1.csv
 ├raw_imu_teensy2.csv
 ├robot_instruction.csv
 ├tf.csv
 └tf_static.csv

- csv2dataframe.py: Converts the data into dataframes
- Object&lt;1|2|3|&gt;/: Three folders with data from each object
- recordstep__object&lt;1|2|3&gt;_pretained_: Files with RL data for each object.
- robot_O&lt;1|2|3&gt;_T_A&lt;0|45|90|135|180&gt;_/: Data dollected from each object at different angles.

[1] T. E. Alves de Oliveira, A. -M. Cretu and E. M. Petriu, "Multimodal Bio-Inspired Tactile Sensing Module," in IEEE Sensors Journal, vol. 17, no. 11, pp. 3231-3243, 1 June1, 2017, https://doi.org/10.1109/JSEN.2017.2690898. 
[2] T. E. Alves de Oliveira, V. Prado da Fonseca, BioIn-Tacto: A compliant multi-modal tactile sensing module for robotic tasks, HardwareX, Volume 16, 2023, e00478, ISSN 2468-0672, https://doi.org/10.1016/j.ohx.2023.e00478.
DOI: 10.17632/v525mwf3cc
title: Empathes: A general code for nudged elastic band transition states search

description: An easy and flexible interface, Empathes (Extensible Minimum PATH EStimator), that allows to perform Nudged Elastic Band calculation for the determination of transition states is presented. The code is designed to be easily modified, in order to be associated with the user's preferred calculation software, even with those which implement composite approaches. In particular, the interfaces to Gaussian and Siesta programs are discussed in details, being the former only used for testing purpose, while the latter can be productively employed for transition states search with that commonly used density functional theory software for periodic calculations.
DOI: 10.6084/m9.figshare.12676070.v2
title: Global changes in vessel traffic density per vessel categories during January-June 2020

description: Absolute difference in traffic density during January-June 2020, compared with equivalent months from 2019, and derived using cell-by-cell subtraction. Data is provided in GeoTiff format and structured in monthly folders. Coordinate reference system is Mollweide projection with a WGS84 datum.<br>Vessel categories: (a) count (all vessels), (<b>b</b>) cargo, (<b>c</b>) tanker, (<b>d</b>) passenger, (<b>e</b>) fishing, (<b>f</b>) other vessels.<br><br>
DOI: 10.6084/m9.figshare.12751838.v1
title: Current Population Survey data on Employed persons by detailed occupation, sex, race, and Hispanic or Latino ethnicity

description: Tab 1 is the 2019 Current Population Survey data on Employed persons by detailed occupation, sex, race, and Hispanic or Latino ethnicity, also available here: https://www.bls.gov/cps/cpsaat11.htm<br>Tab 2 is the 2019 data for nurses and care aides
DOI: 10.17632/mjjtvftggj
title: EPHX1 deficiency alleviates alcohol-associated liver disease in mice by inhibiting ferroptosis through FGF21 upregulation

description: The sequencing datas of article "EPHX1 deficiency alleviates alcohol-associated liver disease in mice by inhibiting ferroptosis through FGF21 upregulation". Including proteome sequencing of Pair-fed WT mice and EtOH-fed WT mice in NIAAA model, and transcriptome sequencing of EtOH-fed Ephx1 WT mice and EtOH-fed Ephx1 KO mice in NIAAA model.
DOI: 10.6084/m9.figshare.20465754.v1
title: Lebreton_LandCover_No16

description: Data used for flood exposure
DOI: 10.6084/m9.figshare.24182520.v2
title: Yeast RNA-seq data and transcriptome for kallisto-sleuth demo session

description: Paired-end RNA-seq data (indicated by <i>1</i> and <i>2</i> tags) for <i>Saccharomyces cerevisiae</i> under aerobic and anaerobic growth conditions. Each conditions consist of two replicates, as designated by <i>r1</i> and <i>r</i><i>2</i> tags.The reference transcriptome for <i>Saccharomyces cerevisiae</i> is also provided.For teaching students to run kallisto and sleuth pipeline.
DOI: 10.6084/m9.figshare.29147693.v2
title: yellow river delta data

description: a research on the microbial distribution at Yellow River Delta
DOI: 10.6084/m9.figshare.6223133.v1
title: Data Flooding.xlsx

description: Data extreme flooding events
DOI: 10.6084/m9.figshare.12401498.v1
title: JGR-atm_lake CO2 flux

description: CO2 flux by eddy covariance over Poyang Lake
DOI: 10.6084/m9.figshare.1301412.v1
title: GTF file for chr19 from UCSC (hg19)

description: This is for an exercise based on the Illumina BodyMap 2.0 data set.
DOI: 10.6084/m9.figshare.14878653.v2
title: ED Figure 8 - estimated gate set

description: This data set contains data plotted in ED Figure 8.<br>
DOI: 10.6084/m9.figshare.1512427.v8
title: brain tumor dataset

description: This brain tumor dataset contains 3064 T1-weighted contrast-inhanced images with three kinds of brain tumor. Detailed information of the dataset can be found in the readme file.The README file is updated:Add image acquisition protocolAdd MATLAB code to convert .mat file to jpg images
DOI: 10.6084/m9.figshare.7836530.v1
title: A long-term dataset of climatic mass balance, snow conditions and runoff in Svalbard (1957-2018)

description: The dataset contains model output presented in the manuscript 'A long-term dataset of climatic mass balance, snow conditions and runoff in Svalbard (1957-2018)', which is considered for publication in The Cryosphere. <br> <br> The data are structured in 3-D arrays containing spatially distributed and annual mean values of the variables specified below. The spatial resolution is 1x1-km. <br> <br> Variables included in the dataset: <br> - Climatic mass balance <br> - Air temperature <br> - Precipitation <br> - Runoff <br> - Refreezing <br> - Pore space (down to 14 m) <br> - Subsurface temperature (at 14 m depth) <br> - Snow disappearance date <br> - Snow onset date
DOI: 10.17632/zjydvt8sk9
title: Data on early assessment of knowledge, attitudes, and behavioral responses to COVID-19 among Connecticut residents in the US
DOI: 10.6084/m9.figshare.20318562.v1
title: National Performance Indicator Ontology (NPIOnto)

description: Knowledge Model for Semantic Representation of Performance Indicators for the Botswana Integrated Indicator Framework
DOI: 10.6084/m9.figshare.25428046.v1
title: Day-ahead and real-time multi-energy dispatch prices and ambient temperature.docx

description: Integrated energy system optimization. Power system operation dispatch problems. Hydrogen hub. Seasonal energy storage.
DOI: 10.6084/m9.figshare.26962270.v1
title: genome.fasta

description: Genome assembly and annotation of Firmiana kwangsiensis.
DOI: 10.6084/m9.figshare.5044453.v1
title: EEG phase decoding for alphabet

description: 14 subjects' EEG data recorded in Fudan University
DOI: 10.6084/m9.figshare.7667717.v1
title: Chapter 1

description: Figure S1 and Tables S1-5<br>
DOI: 10.17632/f6hd55xvt4
title: Products Demands & Labor and Machine Capacities Used in the Paper Titled: Multi-Facility Aggregate Production Planning with Prosumer Microgrid: A Two-Stage Stochastic Program

description: The products demands (D) and the labor (L) and machine (M) capacities used in the paper titled: Multi-Facility Aggregate Production Planning with Prosumer Microgrid: A Two-Stage Stochastic Program are synthetically generated for each month and outcome (i.e., High, H, Medium, M, Low, L) by the authors. The file below describes the methodology to generate the values and contains tables with the actual values used.
DOI: 10.6084/m9.figshare.11925027.v1
title: Additional file 1 of Impact of process temperature and organic loading rate on cellulolytic / hydrolytic biofilm microbiomes during biomethanation of ryegrass silage revealed by genome-centered metagenomics and metatranscriptomics

description: Additional file 1. Statistics of 16S rRNA gene sequence analysis.
DOI: 10.6084/m9.figshare.1330208.v1
title: NanoWiki (release 1)

description: First release of the NanoWiki data. This knowledge base was originally started at the Karolinska Institutet lab of Prof. Fadeel and continued later at Maastricht University.
DOI: 10.6084/m9.figshare.22245940.v1
title: The origin and speciation of orchids

description: This repository contains the folllowing supplementary data:Angiosperms353 alignments (file Angio353.aligns.rar).Sampling fractions per genera employed in BAMM analyses (file BAMM.samplingFractions.genus.txt).the 10 PP species trees used to infer ancestral ranges and tip speciation rates (file 10.PPtrees.AAR.rar).Ancestral area estimation output files (file DEC_PLUS_AAR.10PPtrees.zip).Speciation tip rates (file BAMM.tipRates.spp.10.PPtrees.txt).
DOI: 10.6084/m9.figshare.26973085.v3
title: 3D Mask R-CNN data

description: Image repository of the paper 3D Mask R-CNN Benchmarks in Controlled Environment and Morphogenesis StudyThis repository contains the test set of the Phallusia mammillata dataset and used in the paper to train and validate the 3D Mask R-CNN. The test set is composed of the PM1 embryo images and ground truth. In details:<br>the 3D input image of Phallusia mammillata PM1 embryo (Inputs.zip)the ground truth ASTEC instance segmentation of these input images (ASTEC_Ground_truth.zip)the predictions infered by the trained 3D Mask R-CNN (3D_Mask_R_CNN.zip)the predictions infered by the state-of-the-art network for cell instance segmentation Cellpose with its pre-trained weights cyto3 (Cellpose_cyto3.zip)the predictions infered by Cellpose after being retrained over a sample of the Phallusia mammillata dataset (Cellpose_retrained.zip)the resulting weights of the 3D Mask R-CNN trained over the Phallusia mammillata dataset.These data can be used to reproduce the 3D Mask R-CNN inference over the Phallusia mammillata test set and to evaluate the predictions against the ASTEC ground truth.The 3D Mask R-CNN code is available here: https://github.com/gdavid57/3d-mask-r-cnnSee the "morphogenesis" branch for the Phallusia mammillata dataset.
DOI: 10.6084/m9.figshare.4110153.v1
title: Original data of Vogt et al. PLOS Biology

description: Accumulating evidence indicates high risk of bias in preclinical animal research, questioning the scientific validity and reproducibility of published research findings. Systematic reviews found low rates of reporting of measures against risks of bias in the published literature (e.g., randomization, blinding, sample size calculation), and a correlation between low reporting rates and inflated treatment effects. That most animal research undergoes peer-review or ethical review would offer the possibility to detect risks of bias at an earlier stage, before the research has been conducted. For example, in Switzerland animal experiments are licensed based on a detailed description of the study protocol and a harm-benefit analysis. We therefore screened applications for animal experiments submitted to Swiss authorities (n=1277) for of the rates at which the use of seven basic measures against bias (allocation concealment, blinding, randomization, sample size calculation, inclusion/exclusion criteria, primary outcome variable and, statistical analysis plan) was described, and compared them with the reporting rates of the same measures in a representative sub-sample of publications (n=50) resulting from studies described in these applications.
DOI: 10.17632/djj5s5nyxc
title: Supplemental Materials for Stein Gold et al. Efficacy and Safety of Apremilast in Patients with Mild to Moderate Plaque Psoriasis: Results of a Phase 3, Multicenter, Randomized, Double-blind, Placebo-controlled Trial. J Am Acad Dermatol. 2021.

description: Mendeley Supplemental Figures and Table for Stein Gold et al. Efficacy and Safety of Apremilast in Patients with Mild to Moderate Plaque Psoriasis: Results of a Phase 3, Multicenter, Randomized, Double-blind, Placebo-controlled Trial. J Am Acad Dermatol. 2021.
DOI: 10.6084/m9.figshare.22774784.v1
title: Replication Package of "Using Deep Learning to Automatically Improve Code Readability"

description: Reading source code occupies most of developer’s daily activities. Any maintenance and evolution task requires developers to read and understand the code they are going to modify. For this reason, previous research focused on the definition of techniques to automatically assess the readability of a given snippet. However, when many unreadable code sections are detected, developers might be required to manually modify them all to improve their readability. While existing approaches aim at solving specific readability-related issues, such as improving variable names or fixing styling issues, there is still no approach to automatically suggest which actions should be taken to improve code readability. In this paper, we define the first holistic readability-improving approach. As a first contribution, we introduce a methodology for automatically identifying readability-improving commits, and we use it to built a large dataset of 124k commits by mining the whole revision history of all the projects hosted on GitHub between 2015 and 2022. We show that such a methodology has a ∼86% accuracy. As a second contribution, we train and test the T5 model to emulate what developers did to improve readability. We show that our model achieves a perfect prediction accuracy between 21% and 28%. The results of a manual evaluation we performed on 500 predictions shows that when the model does not change the behavior of the input and and it applies changes (34% of the cases), in the large majority of the cases (79.4%) it allows to improve code readability.
DOI: 10.6084/m9.figshare.29152808.v2
title: Finnsheep reference genome (Oar_Finn): assembly statistics

description: Summary statistics of Finnsheep genome (Oar_Finn).
DOI: 10.17632/bjk7kkkkst
title: Differences by sex in actinic keratosis distribution

description: This study characterizes the distribution of actinic keratoses (AKs) by sex, age, and income using a cross-sectional chart review of 1,415 patients at the University of Cincinnati Medical Center (2012–2021). AK locations were recorded across nine body sites, revealing sex-specific patterns: men had more AKs on the scalp and ears, while women had more on the chest, back, abdomen, arms, and legs. Age and income quartiles showed no significant differences in AK distribution. Findings suggest behavioral and sociological factors influence UV exposure patterns, informing prevention efforts.
DOI: 10.17632/rwfdhy3n5f
title: Guía Metodológica para la Construcción de Escenarios de Futuro de Universidades

description: El documento presenta un contexto sobre la educación superior, principalmente desde la mirada del sistema universitario colombiano y a partir de esto se identifican y describe los métodos y el paso a paso para determinar escenarios de futuro de las universidades. Esta Guía hace parte los productos de investigación derivado del proyecto de INV2467 financiado por la Universidad Cooperativa de Colombia y la Universidad del Valle.
DOI: 10.6084/m9.figshare.19404563.v1
title: Tomator detection

description: tomator detection dataset
DOI: 10.6084/m9.figshare.23519679.v1
title: Long term community shifts driven by local extinction of an iconic foundation species following an extreme marine heatwave.

description: Raw dataset to accompany Montie & Thomsen 2023, Ecology and Evolution publication titled: Long term community shifts driven by local extinction of an iconic foundation species following an extreme marine heatwave.
DOI: 10.6084/m9.figshare.25206671.v1
title: Data and code_Surapaneni et al., 2024. Ribbontail Stingray Skin Employs a Core–Shell Photonic Glass Ultrastructure to Make Blue Structural Color

description: This data is a supplement to <br><br>V. A. Surapaneni, M. J. Blumer, K. Tadayon, A. J. McIvor, S. Redl, H.‐R. Honis, F. H. Mollen, S. Amini, M. N. Dean,Ribbontail Stingray Skin Employs a Core–Shell Photonic Glass Ultrastructure to Make Blue Structural Color. <i>Adv. Optical Mater</i>. 2024, 2301909. https://doi.org/10.1002/adom.202301909
DOI: 10.6084/m9.figshare.26097025.v1
title: Source_data_tobacco

description: <b>Superiority of native soil core microbiomes in supporting agricultural plant growth</b>
DOI: 10.6084/m9.figshare.28926191.v1
title: <b>Safety of surgery for managing hyperthyroidism in patients with or without preoperative euthyroidism: A systematic review and meta-analysis</b>

description: Clinicians managing hyperthyroid patients who have not yet achieved euthyroid status often face the clinical dilemma of whether to delay surgery or proceed despite the risks. To address this challenge, this systematic review and meta-analysis evaluates postoperative outcomes in patients who were euthyroid versus those who remained hyperthyroid at the time of surgery, aiming to provide evidence-based insights into the safety and efficacy of surgical intervention in these situations.
DOI: 10.6084/m9.figshare.29145176.v1
title: Figure

description: In the information age, global scientific research results have been shared like never before, and the huge amount of data generated by researchers around the world is centrally stored in several public databases, such as UK Biobank, FinnGen, GWAS Catalog, IEU OpenGWAS, etc. However, the current utilization efficiency of these databases is obviously insufficient.In this paper, the Genome-wide Precision Causal Network Translational Medical Paradigm (GPCN-TMP) is proposed for the first time. The paradigm makes full use of global publicly available genomic and multi-omics databases, with the core approach involving Mendelian Randomization (MR) and Generalized Summary-data-based Mendelian Randomization (GSMR) to discover a large number of potential causal relationships through automated large-scale data-driven analysis and rigorous statistical validation.In this paper, we have conducted a comprehensive validation and demonstration by applying the GPCN-TMP theory using the cystatin family as an example. Without any predetermined research directions, we applied self-developed large-scale automated MR and GSMR batch analysis codes to extract relevant data from global public databases, perform preliminary causal network analysis and obtain a large number of potential relationship results. Subsequent cross-validation with existing literature fully demonstrated the scientific validity and feasibility of the GPCN-TMP paradigm.
DOI: 10.6084/m9.figshare.8003762.v2
title: Avocado Transcriptome Assembly

description: Avocado transcriptome assembly from pooled leaf, stem, bud, root, floral and fruit tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 63420 of avocado unigenes respectively were generated and functionally annotated using a combination of de novo transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.
DOI: 10.17632/y7k9yw5txw
title: Fish stocks as phosphorus sources or sinks: Influenced by nutritional and metabolic variations, not solely by dietary content and stoichiometry

description: We hypothesized that fish biomass could act as a source or sink of P, sometimes related to food N:P stoichiometry and many times not. Elemental proportions may not fully explain homeostasis in consumers. Rather the right proportion of certain organic molecules but not all molecules (containing the very same elements) do. With or without these molecules, homeostasis may show unprecedented plasticity, and DRP losses could either go for primary productivity or remain trapped in consumer. Five experiments investigated the following objectives using semi-purified research diets (SPRD) on the common carp (Cyprinus carpio) model. The objectives were as follows: (a) to investigate differences in P utilization efficiency (PUE) and DRP losses between scaleless and scaly carp fed a P-deficient diet; (b) to investigate graded levels of bioavailable P fed (maintaining iso-nitrogenous and isoenergetic intake) on PUE and DRP losses of scaly carp; (c) to investigate graded levels of digestible lysine and methionine fed (maintaining iso-nitrogenous, iso-phosphorus, and isoenergetic intake) on PUE and DRP losses of scaly carp; (d) to investigate graded levels of digestible non-protein energy (NPE) intake (maintaining iso-nitrogenous, iso-amino acids, and iso-phosphorus intake) on PUE and DRP losses of scaly carp; and (e) to investigate overwintering-like feed deprivation on PUE and DRP losses at basal metabolism.

This dataset contains data of pre-trial, experiment 1 to 4 included in the manuscript. 

Parameters include: Experiment; Group; Replicate; Initial tank biomass; Final tank biomass; Feed digestible N; Feed bioavailable P; Food N: P (mass); Food N: P (molar); Non-faecal P loss; Non-faecal N loss; Non-faecal N:P loss (mass); Non-faecal N:P loss (molar); Body protein content; Body N content; Body P content; Body N:P (mass); Body N:P (molar); PUE; DRP losses. 

Experimental groups include: For experiment 1 to 3 (control, T1, T2 and T3), For pre-trial (scaly carp and scaleless carp), For experiment-4 (starved).
DOI: 10.17632/ydj9j88dpr
title: Code and Data for On Index Investing

description: This code and data recreates the tables in "On Index Investing" by Jeffrey L. Coles, Davidson Heath, and Matthew C. Ringgenberg. Please see the "Read Me" file before using it.
DOI: 10.26180/5f7fa7b0df570
title: adsorption.opju

description: Adsorption data for paper<br>
DOI: 10.6084/m9.figshare.14538324.v1
title: Replication package for "Software Engineering for AI-Based Systems: A Survey"

description: This is the replication package of the paper: “Software Engineering for AI-Based Systems: A Survey”, accepted and published in ACM Transactions on Software Engineering and Methodology (TOSEM). Authors: Silverio Martínez-Fernández, Justus Bogner, Xavier Franch, Marc Oriol, Julien Siebert, Adam Trendowicz, Anna Maria Vollmer, Stefan Wagner.<br><br> This replication package consists of the following files:0. Readme<br>1. “Search. Used Search String” file.<br>2. “Screening. Start set of papers” file.<br>3. “Screening. Snowballing document” file.<br>4. “Data extraction. Form” file.<br>5. “Analysis. RQ1 Analysis” file.<br>6. “Analysis. RQ2 Domains” file.<br>7. "Analysis. RQ2 Properties” file.<br>8. “Analysis. RQ3 SWEBOK areas” file.8b. Analysis. Detailed mapping process for RQ3 and RQ4<br>9. “Analysis. RQ4 Challenges analysis” file. <br><br>The research methodology and main results can be found on the paper.
DOI: 10.6084/m9.figshare.17696882.v2
title: avocado.csv

description: avocado<br>
DOI: 10.6084/m9.figshare.21904890.v2
title: Mitra Serajazari_Genotypic_data

description: SNP and FHB field and post-harvest trait associations
DOI: 10.6084/m9.figshare.24493435.v2
title: Supplementary data

description: Supplementary data for “Transport and deposition of ocean-sourced microplastic particles by a North Atlantic hurricane”