cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.21779129.v1
title: Data for the manuscript: Land-cover change in Cuba may favor biodiversity: An example using Omphalea plants and Urania boisduvalii

description: Changes in land cover directly affect biodiversity. Here we assessed land-cover change in Cuba in the past 35 years and analyzed how this change may affect the distribution of <em>Omphalea </em>plants and <em>Urania boisduvalii</em> moths. We analyzed the vegetation cover of the Cuban archipelago between 1985 and 2020. We used Google Earth Engine to classify two satellite image compositions into seven cover types: forest and shrubs, mangrove, soil without vegetation cover, wetlands, pine forest, agriculture, and water bodies. We considered three different areas for quantifications of land-cover change: (1) protected areas, (2) areas of potential distribution of <em>Omphalea</em>, and (3) areas of potential distribution of the plant within the protected areas. We found that the category of “forest and shrubs” have increased significantly in Cuba in the past 35 years and that most of the gained forest and shrub areas were agricultural land in the past. This same pattern was observed in the areas of potential distribution of <em>Omphalea</em>; whereas almost all cover types were mostly stables inside the protected areas. The transformation of agricultural areas into forest and shrubs could represent an interesting opportunity for biodiversity conservation in Cuba. Other detailed studies about biodiversity composition in areas of forest and shrubs gain would greatly benefit our understanding on the value of such areas for conservation.
DOI: 10.5281/zenodo.10024149
title: NWO and ZonMw Open Access Monitor 2022 - dataset

description: This is the dataset underlying the report "NWO and ZonMw Open Access Monitor 2022". 
Openly accessible metadata was used to research if and how publications from research funded by NWO and ZonMw were open access in 2022. 93% of the articles that were detected have been made available open access using one of the available routes (NWO: 93,1%; ZonMw: 92,5%). This is a slight increase compared to 2021 (90%) and 2020 (85%). At least 64% of the included NWO and ZonMw publications of 2022 (3.688 out of 5.763) has been published via Gold, Hybrid, under a transformative agreement, or Green OA, with a CC-BY license and is therefore fully Plan S compliant.
DOI: 10.5281/zenodo.10024148
title: NWO and ZonMw Open Access Monitor 2022 - dataset

description: This is the dataset underlying the report "NWO and ZonMw Open Access Monitor 2022". 
Openly accessible metadata was used to research if and how publications from research funded by NWO and ZonMw were open access in 2022. 93% of the articles that were detected have been made available open access using one of the available routes (NWO: 93,1%; ZonMw: 92,5%). This is a slight increase compared to 2021 (90%) and 2020 (85%). At least 64% of the included NWO and ZonMw publications of 2022 (3.688 out of 5.763) has been published via Gold, Hybrid, under a transformative agreement, or Green OA, with a CC-BY license and is therefore fully Plan S compliant.
DOI: 10.5281/zenodo.8346679
title: RegulonDB v12.0.0

description: RegulonDB is a database that contains the most comprehensive corpus of knowledge of the regulation of transcription initiation of E.coli K-12, including data from both classical molecular biology and high throughput methodologies. Here we describe biological and computational advances for each of the major concepts of transcriptional regulation. These fundamental concepts were initially defined in the second half of last century. Since then, there have been huge advances describing regulatory mechanisms that do not fit with the original definitions, motivating some of us with a group of experts to update definitions that capture current knowledge of transcriptional regulation. These are used here as the reference to describe the historical progress in RegulonDB, its conceptual key changes, together with its current content overview. We also present a full reconstruction of RegulonDB computational infrastructure, significantly improving data storage, retrieval, and accessibility supporting a more intuitive and user-friendly experience. The integration of graphical tools provides clear visual representations of genetic regulation data, facilitating data interpretation and knowledge integration. In supplementary material we summarize the major additions to the biological content since our last NAR paper. RegulonDB can be accessed at: https://regulondb.ccg.unam.mx.
DOI: 10.5281/zenodo.8346680
title: RegulonDB v12.0.0

description: RegulonDB is a database that contains the most comprehensive corpus of knowledge of the regulation of transcription initiation of E.coli K-12, including data from both classical molecular biology and high throughput methodologies. Here we describe biological and computational advances for each of the major concepts of transcriptional regulation. These fundamental concepts were initially defined in the second half of last century. Since then, there have been huge advances describing regulatory mechanisms that do not fit with the original definitions, motivating some of us with a group of experts to update definitions that capture current knowledge of transcriptional regulation. These are used here as the reference to describe the historical progress in RegulonDB, its conceptual key changes, together with its current content overview. We also present a full reconstruction of RegulonDB computational infrastructure, significantly improving data storage, retrieval, and accessibility supporting a more intuitive and user-friendly experience. The integration of graphical tools provides clear visual representations of genetic regulation data, facilitating data interpretation and knowledge integration. In supplementary material we summarize the major additions to the biological content since our last NAR paper. RegulonDB can be accessed at: https://regulondb.ccg.unam.mx.
DOI: 10.5281/zenodo.10035422
title: Preprocessed diabetes data for eipy
DOI: 10.5281/zenodo.10035337
title: Preprocessed diabetes data for eipy
DOI: 10.5281/zenodo.10035338
title: Preprocessed diabetes data for eipy
DOI: 10.5281/zenodo.10033615
title: Supplementary to "The Overall Collection Efficiency of Catching-type Precipitation Gauges  In Windy conditions"

description: Supplementary material for the paper "The Overall Collection Efficiency of Catching-type Precipitation Gauges 
In Windy conditions" submitted to the journal Water Resources Research
DOI: 10.6073/pasta/034d22e0a633bfc156e1c9723049f087
title: Shapefiles for glacier, stream channel, and watershed boundaries in the McMurdo Dry Valleys, Antarctica (2023)

description: This data package includes shapefiles for selected glacier, stream watershed, and stream channel boundaries in the McMurdo Dry Valleys region of Antarctica. A combination of satellite imagery and digital elevation models were used to delineate watershed and stream channel outlines, while glaciers were outlined by hand. Watershed boundaries provide an estimate of the overall topographic contributing area for each stream in Fryxell Basin, whereas stream channel boundaries provide a topographic area estimate for stream channel, beyond the wetted margin, for each stream.
DOI: 10.26093/cds/vizier.22490032
title: The Multi-INstrument Burst ARchive (MINBAR)

description: VizieR online Data Catalogue associated with article published in journal Astronomical Journal (AAS) with title 'The Multi-INstrument Burst ARchive (MINBAR).' (bibcode: 2020ApJS..249...32G)
DOI: 10.6084/m9.figshare.21082654.v3
title: Bidirectional reflectance changes in wild type and chloroplast movement mutants - binary and CSV files

description: Time courses of changes in red-light bidirectional reflectance induced by 1 h irradiation with low (0.1 µmol·m<sup>-2</sup>·s<sup>-1</sup>) or high (100 µmol·m<sup>-2</sup>·s<sup>-1</sup>) blue light of the adaxial surface of rosette leaves of 5-week-old <i>Arabidopsis</i> plants. Measurements were recorded for wild-type (WT), <i>glabra1, phot1</i>,<i> phot2</i>, <i>phot1phot2,</i> and <i>jac1 </i>mutants. The angle of incidence of the measuring and actinic beams was 40° or 55°. The detector was positioned at the angle of 0° (the detector normal parallel to the leaf normal) or either -40° (when incidence at 40°) or -55° (when incidence at 55°). The transmission axis of the polarizer was either parallel (<i>P</i>) or perpendicular (<i>S</i>) to the plane of incidence.Binary files can be opened with BeamJ (https://github.com/pawelHerm/beamJ/tree/master/BeamJ), while the CSV files can be opened with a text editor or MS Excel.
DOI: 10.6084/m9.figshare.24039093
title: Appendix S1: Table S1.List of Species Recorded from All Four Aspects (North, West, South, East) of Rocks (CP01-09), M: Morphology

description: Aim: This study was designed to reveal the potential relationship between the aspect characteristics of rock substrata and lichen diversity. Aspect is one of the effective ecological factors in the colonization and distribution of lichen taxa.<br>Location: In order to find out if there were any aspect preferences of the colonizing species and associations with the neighbouring species, a field study was designed at a rocky habitat in peak area of Cozia National Park (Romania).<br>Methods: Saxicolous lichen samples were collected from 4 different surface aspects (North, South, West and East) of the natural rock substrata in peak area of Cozia National Park (Romania). Specimens were identified through standard taxonomical procedures. Distribution and diversity information was noted in tables.<br>Results: The variety of 52 species identified in a total of 9 saxicolous communities was evaluated according to their presence and frequency levels on 4 different aspects of the rock surface. Distribution and abundance of the species were recorded for each sampling rock and then statistically analysed by using Sorensen similarity index. The analytical data showed that Acarospora fuscata, Buellia ocellata and Candelariella coralliza are the most frequent species in the study area. The points with the highest average number of species were determined at 01S, 04S and 01N aspects respectively to overall results. A higher intensity of species number was seen in the north aspects than in the south aspects and in west aspects than in the east aspects.<br>Main Conclusions: A clear correlation between aspect factor and variety of lichen species was determined, pointing out the existence and formation process of sociological unions within the lichen populations. The distribution and diversity of lichen populations form communities probably due to the sun exposure depending on the geographical directions.
DOI: 10.6084/m9.figshare.24039093.v1
title: Cozia_Peak_20230827.xlsx

description: Aim: This study was designed to reveal the potential relationship between the aspect characteristics of rock substrata and lichen diversity. Aspect is one of the effective ecological factors in the colonization and distribution of lichen taxa.<br>Location: In order to find out if there were any aspect preferences of the colonizing species and associations with the neighbouring species, a field study was designed at a rocky habitat in peak area of Cozia National Park (Romania).<br>Methods: Saxicolous lichen samples were collected from 4 different surface aspects (North, South, West and East) of the natural rock substrata in peak area of Cozia National Park (Romania). Specimens were identified through standard taxonomical procedures. Distribution and diversity information was noted in tables.<br>Results: The variety of 52 species identified in a total of 9 saxicolous communities was evaluated according to their presence and frequency levels on 4 different aspects of the rock surface. Distribution and abundance of the species were recorded for each sampling rock and then statistically analysed by using Sorensen similarity index. The analytical data showed that Acarospora fuscata, Buellia ocellata and Candelariella coralliza are the most frequent species in the study area. The points with the highest average number of species were determined at 01S, 04S and 01N aspects respectively to overall results. A higher intensity of species number was seen in the north aspects than in the south aspects and in west aspects than in the east aspects.<br>Main Conclusions: A clear correlation between aspect factor and variety of lichen species was determined, pointing out the existence and formation process of sociological unions within the lichen populations. The distribution and diversity of lichen populations form communities probably due to the sun exposure depending on the geographical directions.
DOI: 10.6084/m9.figshare.24039093.v2
title: Appendix S1: Table S1.List of Species Recorded from All Four Aspects (North, West, South, East) of Rocks (CP01-09), M: Morphology

description: Aim: This study was designed to reveal the potential relationship between the aspect characteristics of rock substrata and lichen diversity. Aspect is one of the effective ecological factors in the colonization and distribution of lichen taxa.<br>Location: In order to find out if there were any aspect preferences of the colonizing species and associations with the neighbouring species, a field study was designed at a rocky habitat in peak area of Cozia National Park (Romania).<br>Methods: Saxicolous lichen samples were collected from 4 different surface aspects (North, South, West and East) of the natural rock substrata in peak area of Cozia National Park (Romania). Specimens were identified through standard taxonomical procedures. Distribution and diversity information was noted in tables.<br>Results: The variety of 52 species identified in a total of 9 saxicolous communities was evaluated according to their presence and frequency levels on 4 different aspects of the rock surface. Distribution and abundance of the species were recorded for each sampling rock and then statistically analysed by using Sorensen similarity index. The analytical data showed that Acarospora fuscata, Buellia ocellata and Candelariella coralliza are the most frequent species in the study area. The points with the highest average number of species were determined at 01S, 04S and 01N aspects respectively to overall results. A higher intensity of species number was seen in the north aspects than in the south aspects and in west aspects than in the east aspects.<br>Main Conclusions: A clear correlation between aspect factor and variety of lichen species was determined, pointing out the existence and formation process of sociological unions within the lichen populations. The distribution and diversity of lichen populations form communities probably due to the sun exposure depending on the geographical directions.
DOI: 10.6073/pasta/c025c16df67a7a4d72b502843c960450
title: SBC LTER: Beach: Time-series of beach wrack cover and biomass, ongoing since 2008

description: These data describe the composition, cover, depth, and wet biomass of macrophyte wrack accumulated in the intertidal zone measured on five selected sandy beaches of the mainland coast of the Santa Barbara Channel. Data collection began in 2008 and this dataset is updated annually. Two data tables in this data package: 1. Wrack_Cover_All_Years. This is long-term time-series dataset starting in 2008 with fixed wrack species codes. 2. The Wrack_Cover_NON_FILLED_Partialkep dataset is added in 2019, to distinguish whether the fresh or old blade, stipe and holdfast was a fragment or attached to a whole plant.
DOI: 10.6084/m9.figshare.24424432
title: Bidiectional reflectance changes induced by blue light in Arabidopsis - two polarizer setup

description: Time courses of the polarized red-light bidirectional reflectance induced by 1 h irradiation with high blue light (100 µmol·m<sup>-2</sup>·s<sup>-1</sup>) of the adaxial surface of rosette leaves of 5-week-old wild-type and <i>phot1phot2</i> <i>Arabidopsis</i> plants. The blue actinic and red measuring beams impinged the adaxial leaf surface at the angle of 55°. For measurements of diffuse reflectance, the detector was positioned at 0° to the leaf’s normal. For measurements of combined specular and diffuse reflectance, the detector was positioned at -55°. Four possible combinations of the orientation (<i>P/S</i>) of the polarizers in front of the measuring light source and the detector were examinedBinary files can be opened with BeamJ (https://github.com/pawelHerm/beamJ/tree/master/BeamJ), while the CSV files can be opened with a text editor or MS Excel
DOI: 10.6084/m9.figshare.24424432.v1
title: Bidiectional reflectance changes induced by blue light in Arabidopsis - two polarizer setup

description: Time courses of the polarized red-light bidirectional reflectance induced by 1 h irradiation with high blue light (100 µmol·m<sup>-2</sup>·s<sup>-1</sup>) of the adaxial surface of rosette leaves of 5-week-old wild-type and <i>phot1phot2</i> <i>Arabidopsis</i> plants. The blue actinic and red measuring beams impinged the adaxial leaf surface at the angle of 55°. For measurements of diffuse reflectance, the detector was positioned at 0° to the leaf’s normal. For measurements of combined specular and diffuse reflectance, the detector was positioned at -55°. Four possible combinations of the orientation (<i>P/S</i>) of the polarizers in front of the measuring light source and the detector were examinedBinary files can be opened with BeamJ (https://github.com/pawelHerm/beamJ/tree/master/BeamJ), while the CSV files can be opened with a text editor or MS Excel
DOI: 10.6084/m9.figshare.24424615.v1
title: <b><i>Initial data of leading banks for assessing the marketing effectiveness in 2018-2022, billion rubles</i></b>

description: Based on the methodology of Jeffrey, M. (2013), the author proposed an adapted methodology for calculating quantitative indicators of the effectiveness of marketing activities in a bank
DOI: 10.6073/pasta/161101744422c412802e8287dbd8b663
title: Forest-wide bird survey at 183 sample sites the Andrews Experimental Forest from 2009 to present

description: Bird occurrence data collected at 183 sample locations within the H. J. Andrews Experimental Forest (HJA) from 2009-present. We used a stratified, systematic, random design to select sample locations. We stratified across elevation, distance to road, and habitat type (plantation or mature/old-growth forest). We conduct point counts on six separate occasions from May – July, which corresponded to spring arrival and subsequent breeding period for the majority of bird species at HJA. Surveys occur between 05:15h and 10:30h and each consists of a 10-min point count where we record all birds seen or heard. The species of all birds seen and heard are recorded as well as all individual squirrels, chipmunks and pikas seen and heard. Survey-level information is also collected at each point count and includes: weather and wind conditions, stream noise, snow cover on the ground, phenology of vine maple and rhododendron. Data collection is ongoing.
DOI: 10.5281/zenodo.10035519
title: Surface Overview Short Supplemental Tables

description: Sources for imagery and footage used in the overview of solar system surfaces we've visited. Special thanks to Don Mitchell, Gordan Ugarković, Landru79, and Dutchsteammachine for their efforts to re-process, improve, and publish spacecraft imagery
DOI: 10.5281/zenodo.10035518
title: Surface Overview Short Supplemental Tables

description: Sources for imagery and footage used in the overview of solar system surfaces we've visited. Special thanks to Don Mitchell, Gordan Ugarković, Landru79, and Dutchsteammachine for their efforts to re-process, improve, and publish spacecraft imagery
DOI: 10.6084/m9.figshare.24424756
title: Flores_Raw_Data_Number_Concepts_Application_CRA_I

description: This study examined the effects of the concrete-representational-abstract integrated sequence (CRA-I) for number concepts and their application through rounding and regrouping. The research questions addressed the extent to which CRA-I changed student performance in the following areas: a) accurately completed equations that required subtraction with regrouping in the tens place, b) accurately completed equations that required subtraction with regrouping in the tens place and hundreds place, c) three-digit numbers rounded to either the nearest ten or hundred, and d) decomposed three-digit numbers using multiple equations. Four students in the fourth grade participated. Two students were English language learners; one received services under the category of learning disabilities and the other was being evaluated for special education services. Two other students received services under the categories of learning disabilities and other health impairments respectively. The researchers employed a single-case multiple probe across behaviors design. They found a functional relation between CRA-I and the behaviors associated with number concepts.
DOI: 10.6084/m9.figshare.24424756.v1
title: Flores_Raw_Data_Number_Concepts_Application_CRA_I

description: This study examined the effects of the concrete-representational-abstract integrated sequence (CRA-I) for number concepts and their application through rounding and regrouping. The research questions addressed the extent to which CRA-I changed student performance in the following areas: a) accurately completed equations that required subtraction with regrouping in the tens place, b) accurately completed equations that required subtraction with regrouping in the tens place and hundreds place, c) three-digit numbers rounded to either the nearest ten or hundred, and d) decomposed three-digit numbers using multiple equations. Four students in the fourth grade participated. Two students were English language learners; one received services under the category of learning disabilities and the other was being evaluated for special education services. Two other students received services under the categories of learning disabilities and other health impairments respectively. The researchers employed a single-case multiple probe across behaviors design. They found a functional relation between CRA-I and the behaviors associated with number concepts.
DOI: 10.26186/144348
title: Torres Strait Bathymetry 30m 2020 - A High-resolution Depth Model (20200021C)

description: This dataset contains bathymetry products from the compilation of all available source bathymetry data within the Torres Strait into a 30 m-resolution Digital Elevation Model (DEM). The Torres Strait lies at the northern end of the Great Barrier Reef (GBR), the largest coral reef ecosystem on Earth, and straddles the Arafura Sea to the west and the Coral Sea to the east. The Torres Strait area is bounded by Australia, Indonesia and Papua New Guinea. Bathymetry mapping of this extensive reef and shoal system is vital for the protection of the Torres Strait allowing for the safe navigation of shipping and improved environmental management. Over past ten years, deep-water multibeam surveys have revealed the highly complex continental slope canyons in deeper Coral Sea waters. Shallow-water multibeam surveys conducted by the US-funded Source-to-Sink program revealed the extensive Fly River delta deposits. Airborne LiDAR bathymetry acquired by the Australian Hydrographic Office cover most of the Torres Strait and GBR reefs, with coverage gaps supplemented by satellite derived bathymetry. The Geoscience Australia-developed National Intertidal DIgital Elevation Model (NIDEM) improves the source data gap along Australia’s vast intertidal zone. All source bathymetry data were extensively edited as point clouds to remove noise, given a consistent WGS84 horizontal datum, and where possible, an approximate MSL vertical datum. The 30 m-resolution grid is a fundamental dataset to underpin marine habitat mapping, and can be used to accurately simulate water mixing within a whole-of-GBR scale hydrodynamic model.