cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.20073119.v1
title: Defects in C programs

description: These are datasets containing software defects in C programs paired with corresponding patches and metadata, collected from public GitHub repositories. <br> - GDD.7z contains 181722 general defects - MDD.7z contains 48076 memory-related defects <br> [Note about compliance] These datasets are to help researchers evaluate the ability of deep learning in software engineering. They are not intended for commercial use, as repositories may have their own license. Users of these datasets should check the license of each defect on GitHub to see what is permitted. We have included the repository name of each defect in the corresponding metadata file for your convenience.
DOI: 10.6084/m9.figshare.12251285.v1
title: Data of the skeleton structure of vertebrae and caudal of mullets (Mugilidae).xlsx

description: The skeleton structure of vertebrae and caudal of mullets (Mugilidae)
DOI: 10.6084/m9.figshare.9937109.v1
title: ILRReviewProtestData

description: NFL Attendance, Protest Data, and Other market measures.
DOI: 10.6084/m9.figshare.24574489.v1
title: <b>Marker-based pedigree reconstruction reveals limited diversity within commercial </b><b><i>Eucalyptus benthamii</i></b><b> breeding populations in Brazil</b>

description: <i>Eucalyptus benthamii</i> is an economically important but increasingly endangered tree species in its natural range in Australia. Recent germplasm introductions from natural stands used to develop breeding populations might thus represent relevant repositories of diversity for reforestation purposes. We used microsatellite markers to reconstruct the pedigrees and estimate diversity parameters for breeding populations of two Brazilian forest-based companies. The analysis, together with evidence from historical germplasm export data from the Australian Tree Seed Centre, revealed that genetic diversity within the two breeding populations is modest. Status number, i.e., the effective number of unrelated individuals in the two breeding populations, was estimated to be in the range 8.5 – 22.0 per population based on marker-based co-ancestry estimates. This is likely a result of the narrow genetic base of the initial introductions and subsequent directional selection and breeding. As further selection and breeding will likely lower the status number, genetic infusion of new, unrelated selections will be required to manage the breeding programme in the future.
DOI: 10.6084/m9.figshare.26862454.v1
title: Supplementary Material for: Utility of assessing early tumor shrinkage as an efficacy predictor in patients with non–surgically indicated or recurrent esophageal cancer treated with nivolumab plus ipilimumab

description: Introduction: Nivolumab plus ipilimumab combination therapy has been administered as a first-line treatment in Japan since 2022 for patients with unresectable progressive or recurrent esophageal cancer. The efficacy and safety of this immune checkpoint inhibitor (ICI) doublet therapy is now being evaluated, and it is necessary to identify populations that benefit from this treatment at an early phase after initiation. For patients not showing early benefit, changing as soon as possible to other therapeutic strategies could improve their survival outcomes. Therefore, we attempted to identify decision-making factors such as early tumor shrinkage (ETS) based on treatment experience with ICI doublet therapy.
Methods: The study included 19 patients who received nivolumab plus ipilimumab for non–surgically indicated or recurrent esophageal cancer between July 2022 and November 2023. Tumors were assessed approximately every 2 months after treatment initiation. The effects of ETS, depth of response (DpR), and clinicopathologic features, including immune-related adverse events (irAEs), on progression-free and overall survival were evaluated using Kaplan-Meyer plots and Cox proportional hazard models.
Results: The mean duration of ICI doublet administration was 5.89 months (range, 1-16 months). At first evaluation, patients who exhibited no tumor progression &gt;20% indicated possible response to ICI doublet therapy, and patients whose tumors shrank even minimally exhibited favorable progression-free survival. Higher DpR at any cut-off line exhibited better progression-free survival than those with lower DpR. Fifteen patients experienced irAEs, with 13 of these patients experiencing irAEs within 3 months of treatment initiation. irAEs were associated with the efficacy of ICI doublet therapy, but efficacy could not be predicted based on early irAE experience.
Conclusion: ETS-high, DpR-high, and irAEs might be associated with favorable responses to nivolumab plus ipilimumab. As a predictor of efficacy at an early phase, ETS &gt;0% could be a deciding factor for continuing ICI doublet therapy.
DOI: 10.6084/m9.figshare.27934881.v1
title: GrainSpace-VAL maize

description: grainspace val maize
DOI: 10.6084/m9.figshare.17087504.v1
title: Capstone Project Raw Data.xlsx

description: This is a compiled list of all the women who took part in the data collection process.
DOI: 10.6084/m9.figshare.3563721.v1
title: Supplement 1. R script for calculating the Raup-Crick metric as described in the text.

description: File List Raup-Crick.txt -- (MD5: c37b2472e568eae3f1c0a5f1adec3d80) Description The code included in Raup-Crick.txt allows one to perform the null model analyses described in the text. The resulting values represent the degree to which observed numbers of shared species between any two sites differ from what would have been expected by random chance given the number of species co-occurring in each of two localities, and the designated regional species pool.
DOI: 10.6084/m9.figshare.26103964.v2
title: <b>Spatial and Temporal Trends in Dung Beetle Research</b><b> dataset</b>

description: Dataset associated with the manuscript: <b>Spatial and Temporal Trends in Dung Beetle Research</b>
DOI: 10.6084/m9.figshare.3566073.v1
title: Appendix F. Vegetation structure vs. functioning.

description: Vegetation structure vs. functioning.
DOI: 10.6084/m9.figshare.7768229.v2
title: MODIS based peak NDVI image Year 2013 Tile H26V05

description: MODIS based peak NDVI image Year 2013 Tile H26V05
DOI: 10.6084/m9.figshare.7928918.v1
title: gVCF_HG03887

description: 1000 Genomes gVCF mapped to hs37d5 for HG03887. Complete collection: https://doi.org/10.6084/m9.figshare.c.4414307
DOI: 10.6084/m9.figshare.19097078.v2
title: Application of Recurrent Neural Network to Modeling Earth’s Global Electron Density

description: This is the dataset for the paper 'Application of Recurrent Neural Network to Modeling Earth’s Global Electron Density'. The paper is submitted to JGR Space Physics.
DOI: 10.6084/m9.figshare.24425344.v2
title: Butoh Impedance Before and After- 02-06-2023

description: Impedance data that collected before and after the rehearsal on 02-06-2023. The impedance data recorded after was lost.
DOI: 10.6084/m9.figshare.12130257.v2
title: Results of Code Smell Detection

description: This excel sheet contains the data gathered during my master's thesis project. In this project I examined refused bequest and inappropriate intimacy code smells in Java and Python source code. <br>The excel sheet contains the metadata for each of the datasets and how many times each code smell occurred.
DOI: 10.6084/m9.figshare.1577589.v1
title: In Vito Micropropagation of Orthosiphon aristatus Blume Miq.

description: The study describes and standardises a protocol for the maa propagtion of <em>Orthosiphon aristatus</em> - A rare highly valuable ethnomedicinal herb.
DOI: 10.6084/m9.figshare.12597590.v2
title: Sycamore QAOA experimental data

description: This is the dataset of experimental quantum data from experiments described in "Quantum Approximate Optimization of Non-Planar Graph Problems on a Planar Superconducting Processor" (https://arxiv.org/abs/2004.04197)
DOI: 10.6084/m9.figshare.19450916.v1
title: FTIR Dataset

description: Databases of FTIR spectra of saliva samples from patients with and without type 2 diabetes (TYPE 2 DIABETES DATASET and CONTROL DATASET respectively)
DOI: 10.6084/m9.figshare.19902355.v1
title: Estimation of biometric, physiological, and nutritional variables in lettuce seedlings using multispectral images

description: ABSTRACT The formation of seedlings is one of the most important phases of lettuce cultivation. Therefore, any strategy that aims to obtain high-quality seedlings can increase productivity. One of these strategies is the prediction of morphophysiological attributes based on optical properties. The objective of this study was to quantitatively estimate the biometric variables of lettuce from parametric and non-parametric models based on the response of multispectral camera images. The experiment was conducted in a greenhouse in the municipality of Uberaba, Minas Gerais State, Brazil. Twenty days after sowing, multispectral images of the plants were captured using a MAPIR Survey 3 camera. To compose the estimation models, along with the original bands of the camera, the multispectral vegetation indices were calculated using the calibrated original camera bands. Bands B550, B660, and B850 and the near-infrared indices contributed significantly to estimating the physiological variable models, with B850 contributing the most to the biometric and nutritional variables. From the near-infrared band (B850) and derived indices, it was possible to estimate all the agronomic variables from the models generated by the M5 algorithm, with an accuracy of up to 1.6% for the maximum quantum yield. Thus, it is possible to quantify the biometric, physiological, and nutritional variables of lettuce using a multispectral camera. Among the Mapir camera bands, B660 exhibited the greatest variability, showing that the red range was the most sensitive.
DOI: 10.6084/m9.figshare.3529175.v1
title: Appendix B. A table providing correlations of NMDS axes with vegetation variables.

description: A table providing correlations of NMDS axes with vegetation variables.
DOI: 10.6084/m9.figshare.3452765.v2
title: Supplementary Material for: Swiss S1 Guidelines on the Systemic Treatment of Psoriasis Vulgaris

description: Psoriasis vulgaris is a common, chronic inflammatory skin disease with a prevalence of 1.5-2% in Western industrialized countries. A relevant percentage of patients suffer from moderate-to-severe psoriasis and experience a significant reduction in quality of life. The choice of an adequate therapy could help to prevent disease and exacerbation of comorbidity, which could increase quality of life, avoid hospitalization and avoid reduction of working days. The present guidelines are focused on the initiation and management of systemic therapies in cases of moderate-to-severe plaque-type psoriasis in adults to optimize treatment response, adherence and quality of life. This first version of the Swiss S1 guidelines presents therapeutic recommendations which are based on a systematic literature search as well as an informal expert consensus of dermatologists in Switzerland.
DOI: 10.6084/m9.figshare.28751012.v1
title: Tested Molecules

description: Here are the .txt files with the molecules used for testing
DOI: 10.6084/m9.figshare.13645655.v1
title: Dinâmicas de conhecimento e uso de plantas medicinais em um assentamento rural de Belém do Pará – PA / Dynamics of knowledge and use of medicinal plants in a rural settlement of Belém do Pará - PA / Material Suplementar / Supplementary Material

description: <b>Tabela S1 - </b>Lista das 140 plantas medicinais utilizadas ou conhecidas por 61 moradores do Assentamento Paulo Fonteles, Distrito de Mosqueiro, Belém, PA. Dinâmica de uso: Δ = usos mantidos; □ = usos incorporados; * = usos descontinuados; # = usos substituídos. NV = número do voucher (IL = identificação através da literatura). C = número de citações. Or = origem (N = nativa da Amazônia; E = exótica).<b>Table S1 - </b>List of 140 medicinal plants used or known in the Paulo Fonteles Settlement, Mosqueiro District, Belém, PA. Dynamics of use: Δ = maintained uses; □ = incorporated uses; * = discontinued uses; # = substituted uses. NV = voucher number (IL = identification through the literature). C = number of citations. Or = origin (N = native to the Amazon; E = exotic).
DOI: 10.6084/m9.figshare.17122547.v1
title: R script Ecological Niche Modeling and occurrence records

description: The file "<i>ENM_Holoregmia_viscida.R</i>" follows a routine of commands for ecological niche modeling of <i>Holoregmia viscida</i> Nees.<br><br>The file "Occurrence_data.txt” contains the 34 points of occurrence of <i>Holoregmia viscida</i> Nees in geographical coordinates in decimal degrees.
DOI: 10.6084/m9.figshare.16435623.v1
title: Morphological and stable isotope data of Hemiculter leucisculus

description: The dataset was collected <em> </em>at 6 sites in September to October, 2017, along the latitude from six sites in the three big river basin, China, and has been processed by a series of PCA and Pearson correlation analysis to produce a MS
DOI: 10.6084/m9.figshare.12854423.v1
title: Comparative transcriptome analyses of a table grape ‘Summer Black’ and its early-ripening mutant ‘Tiangong Moyu’ identify candidate genes potentially involved in berry development and ripening

description: Early ripening is an important desirable attribute for fruit crops. ‘Tiangong Moyu’, a bud mutant of the grape cultivar ‘Summer Black’ (<i>Vitis vinifera</i> L<i>.</i>× <i>Vitis labrusca</i> L<i>.</i>), ripens nearly 10 days earlier and shows earlier increase in fresh weight, sugar accumulation, and color change and faster decrease in titratable acid than ‘Summer Black’. To identify the genes controlling early fruit development and ripening in ‘Tiangong Moyu’, RNA-Seq profiles of the two cultivars were compared at five different berry developmental stages. Based on GO annotation and KEGG pathway enrichment analysis, the differentially expressed genes were clustered into various functional groups, including plant hormone signal transduction, transcription factors, anthocyanin-associated biosynthesis pathway, phenylpropanoid biosynthesis, plant–pathogen associated and plant–pathogen interaction, and ripening-related protein genes. Our results provided a global transcriptional profile of candidate genes involved in regulating berry development and ripening and a genetic basis for the understanding of grape berry ripening.
DOI: 10.6084/m9.figshare.15124755.v1
title: Wind and wave datasets in the Gulf of Mexico (Version 1)

description: This dataset includes wind and wave datasets. Among them, the wind data comes from the ERA5 reanalysis wind dataset of the European Center for Medium-Term Weather Forecast (ECMWF; https://cds.climate.copernicus.eu/cdsapp#!/dataset/reanalysis-era5-single-levels?tab=form). The time range of wind data is from January 4, 2017, to December 31, 2017. After bilinear interpolation, the spatial resolution of wind data is increased from 0.25°×0.25° to 0.05°×0.05°. The wave dataset is a significant wave height dataset simulated by the SWAN model with wind data as input. The time range and resolution of the wave dataset are consistent with the processed wind dataset.<br>The dataset includes two folders, one is data1, the other is data2. The target sea area of data1 is 25.05°N94.65°W−27.00°N92.70°W, which contains the files of wind U and V component matrix (data_u10.csv, data_v10.csv) and the file of significant wave height (data_swh.csv). Matrix elements correspond to spatial locations. Their spatial resolution is 0.05 ° × 0.05 °. The target sea area of data2 is 24.05°N95.65°W−28.00°N91.70°W, which contains the files of wind field U and V component matrix (data_u10.csv, data_v10.csv) and the file of significant wave height (data_swh_41x41.csv, data_swh_81x81.csv). Matrix elements correspond to spatial locations. The spatial resolutions of data_u10.csv, data_v10.csv, and data_swh_81x81.csv are all 0.05° × 0.05°. The spatial resolution of data_swh_41x41.csv is 0.1° × 0.1°.<br>
DOI: 10.6084/m9.figshare.19773442.v1
title: Dataset for Relationship for Depression, Self-Esteem and Lifestyle Factors Among University Students in Singapore and Malaysia

description: Dataset for Relationship for Depression, Self-Esteem and Lifestyle Factors Among University Students in Singapore and Malaysia
DOI: 10.6084/m9.figshare.29141855.v1
title: Datasets generated for O'Mara et al. (2025), Capturing vegetation gradients along the West African margin using terrestrial plant biomarkers in marine sediments. <i>Geochemistry, Geophysics, Geosystems.</i>

description: Organic and inorganic geochemical data from a transect of marine core top sediments spanning the Iberian through West African margins in the North/South Atlantic Ocean (39.9°N–33.9°S). Core samples were provided by the Lmaont-Doherty Core Repository of Columbia University. Core information can be found in Table S1 in this dataset. Geochemical measurements include plant wax n-alkane concentration, mass accumulation rates, and carbon isotope values; pentacyclic triterpene methyl ethers (PTME) concentration and mass accumulation rates; U/Th series isotope measurements and estimated 230Thxs-derived mass accumulation rates. <br><br>Plant-wax concentrations were made via gas chromatography-mass spectrometry at the Lamont-Doherty Earth Observatory (LDEO) Organic Geochemistry Lab using an Agilent 7890A GC coupled to an Agilent 5975C MS, plant-wax isotope measurements were made at the LDEO Stable Isotope Lab using A Thermo Delta V Advantage isotope ratio mass spectrometer coupled to a Thermo Trace GC Ultra and Isolink through a ConFlo IV, U/Th measurements were made using a Thermo Scientific Element 2 ICP-MS. <br><b>File descriptions:</b>Table S1. Core top sample site information. References for age control: (Archer, 1996; Balsam & McCoy, 1987; Barrows & Juggins, 2005; Bollmann et al., 2002; Catubig et al., 1998; Cortese et al., 2013; Hesse et al., 2011; Kucera et al., 2005; Lynch-Stieglitz et al., 2006; Mix et al., 1999; U. Pflaumann et al., 2003; Uwe Pflaumann et al., 1996; Prell et al., 1999; Schmidt et al., 2004) Table S2. Parent triterpenol compounds and quantification ion mass/charge ratios for individual PTMEs Table S3. River basin assignments for core top sites Table S4. Uranium/Thorium isotope concentrations and derived bulk sediment fluxes Table S5. Sample biomarker concentrations (ng/g), n-alkane CPI24-36, and n-alkane ACL25-35 Table S6. Sample biomarker fluxes (ng/cm2/kyr) Table S7. Plant-wax n-alkane carbon isotopes (d13C ‰ VPDB) Table S8. Linear correlation coefficients R between d13C values of n-alkane homologs (* p&lt;0.1, ** p&lt;0.01, *** p &lt; 0.001)
DOI: 10.6084/m9.figshare.22691188.v2
title: Untitled Item

description: The MIDOG++ dataset represents an extension of the data set used in the MIDOG 2021 and 2022 challenges. We provide region of interest images from 503 histological specimens of seven different tumor types with variable morphology: breast carcinoma, lung carcinoma, lymphosarcoma, neuroendocrine tumor, cutaneous mast cell tumor, cutaneous melanoma, and (sub)cutaneous soft tissue sarcoma. The human and canine samples were processed and stained at different human and veterinary pathology laboratories with standard H&E dye and digitized with different digital whole slide image scanners. We provide labels for 11,937 mitotic figures that have been differentiated against 14,351 imposter cells in a blinded consensus by two pathologists and a final decision by a third pathologist for disagreed labels.
DOI: 10.6084/m9.figshare.9876404.v1
title: Global GDP data

description: Global GDP data from Nationmaster.
DOI: 10.6084/m9.figshare.7710785.v1
title: Holocene history of a lake filling and vegetation dynamics of the Serra Sul dos Carajás, southeast Amazonia

description: ABSTRACT Down-core changes in sedimentary facies, elemental geochemistry, pollen, spore, δ13C, δ15N and radiocarbon records from a filled lake, named R4, of the Serra Sul dos Carajás were used to study the relationship between the paleomorphological and paleoecological processes and their significance for Holocene paleoclimatology of the southeast Amazonia. The sediment deposition of the R4 lake started around 9500 cal yr BP. Increase of detrital components from 9500 to 7000 cal yr BP suggests high weathering of surrounding catchment rocks and soils, and deposition into the lake basin under mudflows. At that time, montane savanna and forest formation were already established suggesting predominance of wet climate. However, from 7000 to 3000 cal yr BP, a decline of detrital input occurred. Also, forest formation and pteridophytes were declined, while palms and macrophytes were remained relatively stable, indicating that water levels of the lake is likely dropped allowing the development of plants adapted to subaerial condition under drier climate conditions. After 3000 cal yr BP, eutrophication and low accommodation space lead to high lake productivity and the final stage of the lake filling respectively, and forest formation may has acquired its current structure, which suggests return of wetter climate conditions.
DOI: 10.6084/m9.figshare.16746622.v1
title: CL20-TNT_reference-dataset

description: The reference dataset used in work "Ab Initio Neural Network MD Simulation of Thermal Decomposition of High Energy Material Cl-20/TNT".
DOI: 10.6084/m9.figshare.19145387.v1
title: raw data of prevalence of infection from Parasites do not adapt to elevated temperature as evidenced from experimental evolution of a phytoplankton-fungus system

description: Infection prevalence counts of the parasite populations Chy_16 and Chy_22 (maintained for six months at control (16 °C) and elevated temperatures (22 °C), respectively), as well as Chy_Re22 (i.e., a subpopulation of Chy_22 returned to 16 °C three weeks before the fitness test) at the different temperatures at which the fitness tests were performed (16 °C; 22 °C). Legend: “line” - parasite populations in serial passage phase: CAT16 = Chy_16, CAT22 = Chy_22, RECAT22 = Chy_Re22; “temp” - temperature in fitness test; “bio-rep” - biological replicate, i.e. replicates of parasite population in the serial passage phase; “tech-rep” - technical replicate, i.e. replicates of parasite population in the fitness test, stemming from one biological replicate of the serial passage phase, “poi” - prevalence of infection, % infected individuals per population
DOI: 10.6084/m9.figshare.28870709.v1
title: Quantum Coherence Test between Virtual and Collective Anti-Time States

description: This simulation investigates the quantum coherence between an individual virtual particle state and a collective anti-time-induced quantum state. Using a simplified Hadamard test circuit, the experiment evaluates the overlap amplitude μcoherence=∣⟨Ψcollective∣Ψindividual⟩∣\mu_{\text{coherence}} = |\langle \Psi_{\text{collective}} | \Psi_{\text{individual}} \rangle|μcoherence​=∣⟨Ψcollective​∣Ψindividual​⟩∣, reflecting phase alignment and entanglement influence within anti-time dynamics.This simulation is part of a broader study on the theoretical implications of anti-time in quantum cosmology, particularly focusing on the transition from entangled virtual particle pairs to organized anti-matter states through collective quantum behavior.The circuit is written in OpenQASM 2.0 and executed on IBM Quantum Composer with 8192 shots.
DOI: 10.6084/m9.figshare.29063027.v2
title: Recap of Grade

description: This research aims to evaluate how different combinations of learning strategies and instructional media affect students’ <b>classification skills</b> and <b>concept mastery</b> in the topic of <b>Animalia</b>.
DOI: 10.6084/m9.figshare.7177556.v1
title: Dataset 7 Ess-no human homolog.xlsx

description: Ess-no human homolog