cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.c.3595937_d5.v1
title: Additional file 6: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed up-regulated genes at 20 DPA in MD52ne. Seven hundred seventy four differentially expressed up-regulated genes at 20 DPA in MD52ne are included in this table. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 91Â kb)
DOI: 10.6084/m9.figshare.c.3595964_d1.v1
title: MOESM1 of A framework for evaluating the costs of malaria elimination interventions: an application to reactive case detection in Southern Province of Zambia, 2014

description: Additional file 1. Costing analysis workbook.
DOI: 10.6084/m9.figshare.c.3595937_d6.v1
title: Additional file 2: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed genes at 15 DPA between MD52ne and MD90ne. This table contains 4005 allotetraploid cotton genes that differentially significantly express between MD52ne and MD90ne in 15 DPA developing fibers. The threshold absolute value of log2 ratio was ≥ 1 and p value ≤ 0.05. Comparison of expression level between MD52ne and MD90ne is also included as fold change. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 428 kb)
DOI: 10.6084/m9.figshare.c.3595937_d8.v1
title: Additional file 11: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Names of the important genes related to cotton fiber cell wall development are located near the identified QTL regions. This table contains differentially expressed genes from RNA-seq data that physically located near the two previously reported QTLs associated with BFS and UHML located on chromosomes 03 and 24, respectively by Islam et al. 2014 [49]. (XLSX 12Â kb)
DOI: 10.6084/m9.figshare.c.3595937_d14.v1
title: Additional file 5: of Comparative fiber property and transcriptome analyses reveal key genes potentially related to high fiber strength in cotton (Gossypium hirsutum L.) line MD52ne

description: Differentially expressed down-regulated genes at 15 DPA in MD52ne. Four hundred forty differentially expressed up-regulated genes at 15 DPA in MD90ne are included in this table. First column have G. hirsutum (TM-1) gene name followed by Arabidopsis gene name, TAIR 10 gene description, log2 ratio of reads per kilo-base per million reads (RPKM) between MD52ne and MD90ne, corresponded p value, adjusted p value and fold change (MD52ne over MD90ne). (XLSX 63Â kb)
DOI: 10.6084/m9.figshare.c.3595976_d9.v1
title: Additional file 7: of Identification of baseline gene expression signatures predicting therapeutic responses to three biologic agents in rheumatoid arthritis: a retrospective observational study

description: Ranked gene list by GSEA (TCZ analysis). (XLSX 984 kb)
DOI: 10.15468/dl.qy3rau
title: Occurrence Download

description: A dataset containing 169 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.62477 3.24554,-76.40654 3.24554,-76.40654 3.51071,-76.62477 3.51071,-76.62477 3.24554))",
 "TaxonKey is Miconia Ruiz & Pav."
 ]
}

 The dataset includes 169 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037302-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5067/6gfui5w9do6y
title: Global Fire carbon emissions from CMS-Flux inversions assimilating atmospheric carbon monoxide observations (GlobFireCarbon)
DOI: 10.6084/m9.figshare.c.3596033_d1.v1
title: Additional file 10: Table S6. of Shared genetic control of expression and methylation in peripheral blood

description: Genomic position of the methylation probes from the final correlation list. (CSV 97 kb)
DOI: 10.6084/m9.figshare.c.3596036_d1.v1
title: Additional file 3: of Genome wide association and genomic prediction for growth traits in juvenile farmed Atlantic salmon using a high density SNP array

description: Appendix 3. The Q-Q plots of weight and length generated in GWA analysis. (XLSX 67Â kb)
DOI: 10.6084/m9.figshare.c.3596033_d8.v1
title: Additional file 20: Table S9. of Shared genetic control of expression and methylation in peripheral blood

description: Best association mSNPs for the methylation probes from the final correlation list. (CSV 121 kb)
DOI: 10.6084/m9.figshare.c.3596063_d1.v1
title: Additional file 1: Table S1. of Yogic breathing when compared to attention control reduces the levels of pro-inflammatory biomarkers in saliva: a pilot randomized controlled trial

description: Changes in salivary levels of pro-inflammatory biomarker panel in Yogic Breathing (YB) group when compared with Attention Control (AC) group. Saliva samples from both groups were collected at 0, 5, 10, 15 and 20 min were analyzed multiplex assay as explained under Methods. Data expressing levels of IL-1Î˛, IL-1RA, IL-6, IL-8, IL-10, IL-17, IP-10, MCP-1, MIP-1b, and TNF-alpha (pg/mL) from all the individuals from YB and AC groups at each time point are presented. (XLSX 66 kb)
DOI: 10.6084/m9.figshare.c.3596033_d11.v1
title: Additional file 16: Table S7. of Shared genetic control of expression and methylation in peripheral blood

description: Results of the association analysis between shared e/mSNPs and same chromosome probe pairs with a shared QTL(s). After selecting all the overlapping SNPs at nominal 10-5 association p-value threshold, we pruned the list to contain only SNPs with the lowest p-value from both the expression and methylation association analysis. (CSV 130 kb)
DOI: 10.6084/m9.figshare.c.3596099_d1.v1
title: MOESM4 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 4. Chromatograms for 2,3-bdh; this file contains ABI chromatograms of Sanger sequence of 2,3-bdh locus from â  2,3-bdh clone T2.1.
DOI: 10.6084/m9.figshare.c.3596099_d2.v1
title: MOESM3 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 3. MiSeq read assembly; this file contains MiSeq sequence reads from â  2,3-bdh clone T1.2 mapped to 2,3-bdh locus using default parameters in Geneious software.
DOI: 10.6084/m9.figshare.c.3596117_d1.v1
title: Additional file 1: of Long-term follow-up of mental health, health-related quality of life and associations with motor skills in young adults born preterm with very low birth weight

description: Share of young people living with their parents in Europe. (XLS 30 kb)
DOI: 10.6084/m9.figshare.c.3596099_d4.v1
title: MOESM2 of Genome editing of Clostridium autoethanogenum using CRISPR/Cas9

description: Additional file 2. Chromatograms for adh; this file contains ABI chromatograms of Sanger sequence of adh locus from ∆adh clone T1.1 and ∆adh clone T1.2.
DOI: 10.6084/m9.figshare.c.3596132_d8.v1
title: Additional file 3: of Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA)

description: Polymorphic SVA candidate loci with relaxed SVA Read cutoff. (TXT 89Â kb)
DOI: 10.6084/m9.figshare.c.3596132_d9.v1
title: Additional file 4: of Identification of polymorphic SVA retrotransposons using a mobile element scanning method for SVA (ME-Scan-SVA)

description: Polymorphic SVA candidate loci with stringent SVA Read cutoff. (TXT 60Â kb)
DOI: 10.6084/m9.figshare.c.3596147_d6.v1
title: MOESM9 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 9: Table S5. Values used in decision tree analysis.Table to accompany FigureÂ 6.
DOI: 10.6084/m9.figshare.c.3596135_d6.v1
title: Additional file 3: Table S3. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.6084/m9.figshare.c.3596156_d3.v1
title: Additional file 3: Table S2. of Ambient particulate matter and microRNAs in extracellular vesicles: a pilot study of older individuals

description: Univariate association of ambient PM2.5 levels and all measured miRNAs (nâ  =â  798) in extracellular vesicles (EVs). (XLSX 289 kb)
DOI: 10.6084/m9.figshare.c.3596147_d7.v1
title: MOESM11 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 11: Table S7. Primers used in this study.
DOI: 10.6084/m9.figshare.c.3596147_d8.v1
title: MOESM1 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 1: Table S1. Summary of RNA-seq data. Total mapped reads and mapping rates are indicated for all samples used in this study.
DOI: 10.6084/m9.figshare.c.3596147_d9.v1
title: MOESM6 of Deciphering targeting rules of splicing modulator compounds: case of TG003

description: Additional file 6: Table S4. Exon feature scores of all 2335 control exon pairs. Ensembl IDs, genomic coordinates and all information used to draw FigureÂ 5 box plots (column 1 and 2) are provided with in this table. Some SVM-BP scores are not given because SVM-BP did not find any branch point that satisfies the required conditions of a branch point.
DOI: 10.6084/m9.figshare.c.3596135_d14.v1
title: Additional file 6: Table S4. of Comparison of the miRNA profiles in HPV-positive and HPV-negative tonsillar tumors and a model system of human keratinocyte clones

description: Significant (Pâ
DOI: 10.6084/m9.figshare.c.3596210_d3.v1
title: Additional file 2 of Circlator: automated circularization of genome assemblies using long sequencing reads

description: An Excel spreadsheet containing Tables S1â  5 and S7. Table S1. NCTC project IDs and accession numbers for the PacBio bacterial samples Table S2. A complete breakdown of results on the PacBio bacterial samples (an expanded version of Table 1) Table S3. QUAST results on the PacBio bacterial samples Table S4. Results of testing user-defined parameters for all NCTC data sets Table S5. Results of testing user-defined parameters for the MinION data set Table S7. Run time and memory usage for all data sets (excluding those in Tables S4 and S5). (XLS 305 kb)
DOI: 10.15468/dl.fzs4c9
title: Occurrence Download

description: A dataset containing 1338643 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-57.71307 -21.53145,-55.49368 -19.53311,-55.53636 -17.18383,-56.13388 -16.12069,-57.58502 -16.53029,-58.09719 -15.83347,-58.43864 -16.4075,-58.39595 -17.26536,-57.58502 -17.71315,-57.4143 -18.28144,-57.79843 -19.17069,-58.22523 -20.29555,-57.92647 -21.09407,-57.71307 -21.53145))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1338643 records from 419 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037280-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zyjn6
title: Occurrence Download

description: A dataset containing 3380 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carcinus maenas (Linnaeus, 1758)",
 "Country is Canada",
 "Year is greater than or equal to 1500"
 ]
}

 The dataset includes 3380 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037305-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596249_d3.v1
title: Additional file 2: Table S2. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Primer sequences used for RT-qPCR validation. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3596231_d7.v1
title: Additional file 7: Table S6. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Regulation of extracellular peroxidases. Listed are 29 peroxidases that are annotated to be located in the extracellular region and found to be regulated either in one of the tested lines under Pi-depletion or which were differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions. Green and red fields depict significantly induced or repressed genes, respectively (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). This table is based on the list of 322 regulated genes of the GO term “extracellular region” (see Additional file 6: Table S5). (XLSX 19 kb)
DOI: 10.6084/m9.figshare.c.3596249_d4.v1
title: Additional file 3: Table S3.1Â â   3.3. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Complete list of significantly differentially expressed transcripts in 2DPE groups, including all three contrasts (IVM:BF, BF:NBF, and IVM:NBF). (XLSX 110 kb)
DOI: 10.6084/m9.figshare.c.3596231_d8.v1
title: Additional file 4: Table S3. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Pi-responsive genes exclusively regulated in wild-type and pdr2 roots. Shown is the linear fold change of all 241 genes that showed Pi-dependent expressional changes (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5) in wild-type and pdr2 only, but not in lpr1lpr2 roots. Highlighted are genes that were differentially expressed in pdr2 (at least 2-fold higher or lower) compared to the wild-type. (XLSX 82 kb)
DOI: 10.6084/m9.figshare.c.3596231_d9.v1
title: Additional file 1: Table S1. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: ATH1 dataset. Shown is the relative average expression value of all probe sets (B-G) and the linear fold change of all pairwise comparions (L-AC). (XLSX 9833 kb)
DOI: 10.6084/m9.figshare.c.3596270_d1.v1
title: Additional file 1: of Rifaximin is an effective alternative to metronidazole for the treatment of chronic enteropathy in dogs: a randomised trial

description: Raw Data Rifaximin BMC Vet Res.xlsx (Raw Data Spreadsheet). Raw data of CIBDAI scores, remission rates at day 21, dog weights, and C-reactive protein levels. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3596249_d6.v1
title: Additional file 4: Table S4.1Â â   4.3. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Complete list of significantly differentially expressed transcripts in 6DPE groups, including all three contrasts (IVM:BF, BF:NBF, and IVM:NBF). (XLSX 76 kb)
DOI: 10.6084/m9.figshare.c.3596231_d11.v1
title: Additional file 5: Table S4. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Pi-responsive and deregulated genes in pdr2 or lpr1lpr2 roots and GO term analysis. Shown is a list of 1680 genes that were either regulated in one of the tested lines under Pi-depletion or differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions, compared to the wild-type (p ≤ 0.05, Student’s t-test; 0.66 ≥ FC ≥ 1.5). Additional tabs show results from Gene Ontology analysis using the list of 1680 genes. BP, biological processes; MF, molecular function; CC, cellular compartment. (XLSX 1048 kb)
DOI: 10.6084/m9.figshare.c.3596225_d9.v1
title: Additional file 10: Table S4. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species

description: Sequences of the primers used for the qPCR experiment. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3596231_d12.v1
title: Additional file 13: Table S11. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Protein/transcript list of spCCA analysis. Shown is the list of mRNAs/proteins that are highly relevant (high weight) within the three canonical variables found in the spCCA analysis. Values in tables illustrate the relative weight of each mRNA/protein. Negative values indicate that these mRNAs/proteins are anti-correlated to the pattern of the respective canonical variable as shown in Fig.Â 3 and Additional file 14: Figure S3. (XLSX 26 kb)
DOI: 10.6084/m9.figshare.c.3596231_d13.v1
title: Additional file 9: Table S8. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Differentially regulated proteins. Listed are 1304 proteins that were either Pi-responsive in at least one genotype (Col-0, pdr2 and/or lpr1lpr2) or which were already deregulated in one of the mutant lines grown on Pi-replete conditions (p ≤ 0.05, 0.769 ≥ FC ≥ 1.3). Green and red boxes represent proteins that were significantly induced or repressed, respectively. Blue boxes represent proteins that were significantly regulated (p ≤ 0.05) but did not reach the preassigned cut-off fold change value. (XLSX 230 kb)
DOI: 10.6084/m9.figshare.c.3596225_d10.v1
title: Additional file 1: Table S1. of A robust (re-)annotation approach to generate unbiased mapping references for RNA-seq-based analyses of differential expression across closely related species

description: Genes missing from the published annotations of D. simulans [53] and D. mauritiana [54] and from both species. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.c.3596231_d14.v1
title: Additional file 6: Table S5. of Comparative expression profiling reveals a role of the root apoplast in local phosphate response

description: Regulated genes of the GO term “extracellular region”. Listed are 322 genes whose encoded proteins are annotated to be located in the extracellular region (GO: 0005576) and which were either regulated in one of the tested lines under Pi-depletion or which were differentially regulated in pdr2 or lpr1lpr2 in Pi-replete conditions. This table is based on the list of 1680 genes (see Additional file 4: Table S3). (XLSX 98 kb)
DOI: 10.6084/m9.figshare.c.3596249_d9.v1
title: Additional file 7: Tables S6.1 – 6.6. of Age and prior blood feeding of Anopheles gambiae influences their susceptibility and gene expression patterns to ivermectin-containing blood meals

description: Alternative analysis for the identification of IVM-responsive DE transcripts – 2DPE. (XLSX 58 kb)
DOI: 10.6084/m9.figshare.c.3596339_d2.v1
title: Additional file 7: of The Z-cad dual fluorescent sensor detects dynamic changes between the epithelial and mesenchymal cellular states

description: Supporting Data. (XLSX 51 kb)
DOI: 10.6084/m9.figshare.c.3596348_d2.v1
title: Additional file 2: of Identification of gene-drug interactions that impact patient survival in TCGA

description: This file contains additional figures, sample code, a gene list for table 2 and a drug name change list. (ZIP 1090Â kb)
DOI: 10.6084/m9.figshare.c.3596357_d1.v1
title: Additional file 1: of Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants

description: DDH values for 10 Planctomycetes genomes. Values are expressed in percentage. (XLS 26 kb)
DOI: 10.6084/m9.figshare.c.3596369_d1.v1
title: Additional file 5: of Active recombinant Tol2 transposase for gene transfer and gene discovery applications

description: Insertion “hot spots” for miniTol2. “Hot spots” were arranged according to the insertion loci along the target plasmid. 8-bp target duplication and flanking sequnces were shown. Forward (F) or reverse (R) insertion copies were counted. Repeats coverage indicate the “hot spot” indentified by how many independent experiments. (XLSX 45 kb)
DOI: 10.15468/dl.d9pqv8
title: Occurrence Download

description: A dataset containing 72108 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation, Observation, Occurrence evidence)",
 "Country is one of (Australia, Norway, United States of America, United Kingdom of Great Britain and Northern Ireland, Canada, Denmark, Svalbard and Jan Mayen, South Africa, New Zealand, Switzerland)",
 "DatasetKey is one of (NSW BioNet Atlas, iNaturalist Research-grade Observations, Norwegian Species Observation Service, Skandobs, Norwegian Biodiversity Information Centre - Other datasets, Birds and other animals from Fuglevennen.no, National Mammal Atlas Project, online recording, Villreinobservasjoner, NatureMapr, Species recordings from the Danish National Portal Arter.dk)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC-BY-NC 4.0, CC-BY 4.0, CC0 1.0)",
 "OccurrenceStatus is Present",
 "Protocol is one of (Darwin Core Archive, EML)",
 "PublishedByGbifRegion is one of (Europe and Central Asia, North America, Oceania, Latin America and the Caribbean)",
 "PublishingOrg is one of (ef66652d-3cc3-4140-b268-a07d1e53441b, 28eb1a3f-1c15-4a95-931a-4af90ecb574d, d3978a37-635a-4ae3-bb85-7b4d41bc0b88, 46fec380-8e1d-11dd-8679-b8a03c50a862, 76e6d2c0-1be0-4cf0-b73b-1f10e3bf444c, d3dd95c3-93d4-4349-a13f-55abf89ad140, d9bea9d3-13a5-4768-bbf4-560b9aa95a73, 1a4e6112-b3af-402e-b29f-c2ade2167f72)",
 "TaxonKey is Capreolus capreolus (Linnaeus, 1758)"
 ]
}

 The dataset includes 72108 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0037304-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3596417_d1.v1
title: Additional file 1: of Wells criteria for DVT is a reliable clinical tool to assess the risk of deep venous thrombosis in trauma patients

description: Wells Scoring for patients. (XLSX 25Â kb)
DOI: 10.6084/m9.figshare.c.3596429_d1.v1
title: Additional file 1: Table S1. of Microbial biogeography of a university campus

description: Rarefied OTU table organized in multiple tabs. Tab 1 contains the OTU table organized by building, tab 2 contains the identical table organized by sampling day, tab 3 is a condensed table containing only archaeal reads, and tabs 4 and 5 separate the OTU table into samples with and without debris, respectively. Complete sample name codes are explained in Additional file 3: Table S2. A = day 1, B = day 2, C = day 3, L = left door, R = right door, and numbers 1–65 signify each building arranged by consecutive sampling order.
DOI: 10.6084/m9.figshare.c.3596429_d2.v1
title: Additional file 3: Table S2. of Microbial biogeography of a university campus

description: Metadata file containing all sample codes, PCR setup information, and sample metadata.
DOI: 10.6084/m9.figshare.c.3596438_d1.v1
title: Additional file 2: of Learning pathology using collaborative vs. individual annotation of whole slide images: a mixed methods trial

description: Senior student raw data. This spreadsheet contains all of the raw quiz score and qualitative data obtained from senior medicine students. This data underpins the findings in this report. (XLS 52 kb)
DOI: 10.57702/c5y83ss4
title: Street-to-Shop

description: Street-to-shop: Cross-scenario clothing retrieval via parts alignment and auxiliary set
DOI: 10.57702/9z59ucj5
title: DialogSum, SAMSum, MediaSum, SummScreen, and ADS datasets

description: DialogSum, SAMSum, MediaSum, SummScreen, and ADS datasets for unsupervised dialogue summarization
DOI: 10.57702/rdi7qo7i
title: MediaSum, SummScreen, and ADS datasets

description: MediaSum, SummScreen, and ADS datasets for unsupervised dialogue summarization