cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.w1gr8t
title: Occurrence Download

description: A dataset containing 33428 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 {
 "or" : [
 "TaxonKey is Pyrus bourgaeana Decne.",
 "TaxonKey is Poterium ancistroides Desf.",
 "TaxonKey is Potentilla neumanniana Rchb.",
 "TaxonKey is Potentilla brauniana Hoppe",
 "TaxonKey is Potentilla nivalis Lapeyr.",
 "TaxonKey is Potentilla delphinensis Gren. & Godr.",
 "TaxonKey is Potentilla caulescens L.",
 "TaxonKey is Potentilla hispanica Zimmeter",
 "TaxonKey is Potentilla palustris (L.) Scop.",
 "TaxonKey is Potentilla reuteri Boiss.",
 "TaxonKey is Potentilla pensylvanica L.",
 "TaxonKey is Potentilla fruticosa subsp. floribunda (Pursh) Elkington",
 "TaxonKey is Geum urbanum L.",
 "TaxonKey is Geum rivale L.",
 "TaxonKey is Geum sylvaticum Pourr.",
 "TaxonKey is Geum pyrenaicum Mill.",
 "TaxonKey is Actaea spicata L.",
 "TaxonKey is Adonis vernalis L.",
 "TaxonKey is Selinum carvifolia (L.) L.",
 "TaxonKey is Thorella verticillato-inundata (Thore) Briq.",
 "TaxonKey is Pimpinella major (L.) Huds.",
 "TaxonKey is Hippuris vulgaris L.",
 "TaxonKey is Salix hastata L.",
 "TaxonKey is Salix eleagnos Scop.",
 "TaxonKey is Salix aurita L.",
 "TaxonKey is Salix caprea L.",
 "TaxonKey is Malcolmia lacera subsp. gracilima (Samp.) Franco",
 "TaxonKey is Cochlearia polonica E.Fröhl.",
 "TaxonKey is Cochlearia aestuaria (Lloyd) Heywood",
 "TaxonKey is Cochlearia danica L.",
 "TaxonKey is Cochlearia aragonensis H.J.Coste & Soulié",
 "TaxonKey is Cochlearia aragonensis subsp. navarrana (P.Monts.) Vogt",
 "TaxonKey is Cochlearia glastifolia L.",
 "TaxonKey is Cochlearia tatrae Borbás",
 "TaxonKey is Subularia aquatica L.",
 "TaxonKey is Crambe scaberrima Webb ex Bramwell",
 "TaxonKey is Crambe hispanica subsp. glabrata (DC.) Cout.",
 "TaxonKey is Crambe tataria Sebeók",
 "TaxonKey is Crambe microcarpa A.Santos",
 "TaxonKey is Crambe santosii Bramwell"
 ]
 }
 ]
}

 The dataset includes 33428 records from 96 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075462-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25582/data.2022-12.2676822/2347753
title: Data for EMSL Project 51413 from December 2022
DOI: 10.25549/whit-c170-102822
title: Girl on golf course, California, 1940.

description: 20 photographs of the same woman in two different playsuits, bobby socks and golf shoes in an unknown location, with different items, California, 1940 January.
DOI: 10.25582/data.2023-03.2761179/2347754
title: Data for EMSL Project 51413 from March 2023
DOI: 10.25549/whit-c170-102818
title: Girl on golf course, California, 1940.

description: 20 photographs of the same woman in two different playsuits, bobby socks and golf shoes in an unknown location, with different items, California, 1940 January.
DOI: 10.15468/dl.aauxd9
title: Occurrence Download

description: A dataset containing 210 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bromus dolichocarpus Wagnon"
 ]
}

 The dataset includes 210 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0075625-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rpq73j
title: Occurrence Download

description: A dataset containing 794 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Banisteriopsis laevifolia (A.Juss.) B.Gates)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 794 records from 65 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052710-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rmfwr2
title: Occurrence Download

description: A dataset containing 2458 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "HasCoordinate is true",
 "TaxonKey is Lantana camara L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2458 records from 93 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015819-190621201848488/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2fwbty
title: Occurrence Download

description: A dataset containing 6762 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Abies concolor (Gordon) Lindl. ex Hildebr."
 ]
}

 The dataset includes 6762 records from 199 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0278474-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mknpzi
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ochotona macrotis (Günther, 1875)"
 ]
}

 The dataset includes 117 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002619-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztfxaz
title: Occurrence Download

description: A dataset containing 36164 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Computarización del Herbario ENCB. Fase I (Base de datos de los ejemplares del Valle de México)"
 ]
}

 The dataset includes 36164 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083847-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.11398167
title: WarpTools and MCore processing of a 5 tilt series subset of EMPIAR-10491

description: This dataset contains an example of cryo-electron tomography (cryo-ET) data processed using command line tools available in Warp v2.0.0dev9.

Processing a 5 tilt series subset led to a 2.92 Å reconstruction of apoferritin.

The subset processed includes



TS_1

TS_11

TS_17

TS_23

TS_32


External packages used for processing include AreTomo2 for tilt series alignment and RELION 5 for initial 3D refinement.

The raw data is not included but can be downloaded from EMPIAR using the following code snippet on UNIX systems

wget --show-progress -N -q -nd -P ./ ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/gain_ref.mrc;

for i in 1 11 17 23 32;
do
    echo "======================================================"
    echo "================= Downloading TS_${i} ================"
    wget --show-progress ---timestamping --quiet --no-directories --directory-prefix ./mdoc ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/tiltseries/mdoc/TS_${i}.mrc.mdoc;
    wget --show-progress ---timestamping --quiet --no-directories --directory-prefix ./frames ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/tiltseries/data/*-${i}_*.tif;
done


Processing is detailed in the `processing.sh` shell script. This script is not designed to be run end to end and instead should be run one command at a time.
DOI: 10.5281/zenodo.11398168
title: WarpTools and MCore processing of a 5 tilt series subset of EMPIAR-10491

description: This dataset contains an example of cryo-electron tomography (cryo-ET) data processed using command line tools available in Warp v2.0.0dev9.

Processing a 5 tilt series subset led to a 2.92 Å reconstruction of apoferritin.

The subset processed includes



TS_1

TS_11

TS_17

TS_23

TS_32


External packages used for processing include AreTomo2 for tilt series alignment and RELION 5 for initial 3D refinement.

The raw data is not included but can be downloaded from EMPIAR using the following code snippet on UNIX systems

wget --show-progress -N -q -nd -P ./ ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/gain_ref.mrc;

for i in 1 11 17 23 32;
do
    echo "======================================================"
    echo "================= Downloading TS_${i} ================"
    wget --show-progress ---timestamping --quiet --no-directories --directory-prefix ./mdoc ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/tiltseries/mdoc/TS_${i}.mrc.mdoc;
    wget --show-progress ---timestamping --quiet --no-directories --directory-prefix ./frames ftp://ftp.ebi.ac.uk/empiar/world_availability/10491/data/tiltseries/data/*-${i}_*.tif;
done


Processing is detailed in the `processing.sh` shell script. This script is not designed to be run end to end and instead should be run one command at a time.
DOI: 10.15468/dl.64pp8c
title: Occurrence Download

description: A dataset containing 42712 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Galinsoga parviflora Cav."
 ]
}

 The dataset includes 42712 records from 574 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083828-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pznyv9
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Museum of Southwestern Biology, Division of Arthropods",
 "TaxonKey is Pieris rapae (Linnaeus, 1758)"
 ]
}

 The dataset includes 9 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015826-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b29qpb
title: Occurrence Download

description: A dataset containing 613 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dasyphila preissii Sonder"
 ]
}

 The dataset includes 613 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0287981-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xctwip
title: Occurrence Download

description: A dataset containing 5641 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Paracalanus parvus (Claus, 1863), 1901"
 ]
}

 The dataset includes 5641 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002620-150528172251762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eq5pbr
title: Occurrence Download

description: A dataset containing 1403 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Calidris falcinellus (Pontoppidan, 1763)"
 ]
}

 The dataset includes 1403 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0086639-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kqhyem
title: Occurrence Download

description: A dataset containing 48089 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Thymus serpyllum L."
 ]
}

 The dataset includes 48089 records from 294 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0251529-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pxyebm
title: Occurrence Download

description: A dataset containing 546 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Natrix tessellata (Laurenti, 1768)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 546 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015829-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jphfa5
title: Occurrence Download

description: A dataset containing 54 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tillandsia ignesiae Mez"
 ]
}

 The dataset includes 54 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002620-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3zeenz
title: Occurrence Download

description: A dataset containing 92 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Iriatherina werneri Meinken, 1974)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 92 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0052711-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cd774f
title: Occurrence Download

description: A dataset containing 30847 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Amphibia"
 ]
}

 The dataset includes 30847 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0087087-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jrjzs2
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sceloporus jarrovii cyanostictus Axtell & Axtell, 1971"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002620-150831095807960/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jgvyga
title: Occurrence Download

description: A dataset containing 8027 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Quercus humboldtii Bonpl."
 ]
}

 The dataset includes 8027 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0272961-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ajh2sa
title: Occurrence Download

description: A dataset containing 523 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The Albert J. Cook Arthropod Research Collection",
 "TaxonKey is Pieris rapae (Linnaeus, 1758)"
 ]
}

 The dataset includes 523 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0015831-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cyimdz
title: Occurrence Download

description: A dataset containing 154 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Brazil",
 "TaxonKey is Sabethes chloropterus (Humboldt, 1819)"
 ]
}

 The dataset includes 154 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006866-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5gzhjp
title: Occurrence Download

description: A dataset containing 10034 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Zeus faber sp. mauritanicus Desbrosses, 1937"
 ]
}

 The dataset includes 10034 records from 135 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002620-160311141623029/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fpcyov
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Atelopus onorei Coloma, Lötters, Duellman & Miranda-Leiva, 2007"
 ]
}

 The dataset includes 5 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010291-160623103540712/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.z7r3y5
title: Occurrence Download

description: A dataset containing 34 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eugenia brevipedunculata Kiaersk."
 ]
}

 The dataset includes 34 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158675-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asgjkv
title: Occurrence Download

description: A dataset containing 2236 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium flavum Torr."
 ]
}

 The dataset includes 2236 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063285-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vnpsxq
title: Occurrence Download

description: A dataset containing 350 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cladonia uncialis (L.) Weber ex F.H.Wigg.",
 "MediaType is Image",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 350 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001021-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yejxgv
title: Occurrence Download

description: A dataset containing 326 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Duguetia flagellaris Huber"
 ]
}

 The dataset includes 326 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010291-170826194755519/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bxj5jq
title: Occurrence Download

description: A dataset containing 4320 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Persicaria orientalis (L.) Spach"
 ]
}

 The dataset includes 4320 records from 165 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0291212-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ghknn5
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lepidium lapazianum Al-Shehbaz & S.G.Beck"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063334-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eczver
title: Occurrence Download

description: A dataset containing 15782 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Angola",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 15782 records from 39 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010291-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b6z5wy
title: Occurrence Download

description: A dataset containing 70198 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Daphne laureola L.",
 "HasCoordinate is true"
 ]
}

 The dataset includes 70198 records from 268 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0300177-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lyhrui
title: Occurrence Download

description: A dataset containing 290 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bufo exsul Myers, 1942",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 290 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014633-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wy65cf
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Leucostethus bilsa Vigle, Coloma, Santos, Hernandez-Nieto, Ortega-Andrade, Paluh & Read, 2020"
 ]
}

 The dataset includes 36 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0063322-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2tn3y9
title: Occurrence Download

description: A dataset listing the 55 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Ghana",
 "OccurrenceStatus is Present",
 "TaxonKey is Ipomoea L."
 ]
}

 The dataset's 55 records were derived from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001015-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.c2awg7
title: Occurrence Download

description: A dataset containing 231 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ammi seubertianum (H.C.Watson) Trel."
 ]
}

 The dataset includes 231 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006204-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2qbonf
title: Occurrence Download

description: A dataset containing 6074 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Bufo marinus (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6074 records from 77 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014646-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.