cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.3741720
title: Supplement of manuscript "microorganisms-746193"

description: This folder contains analysis data from the study submitted as manuscript (Manuscript ID microorganisms-746193): TITLE: Functional genomics differentiate inherent and environmentally influenced traits in dinoflagellate and diatom communities AUTHORS: Stephanie Elferink, Stephanie.westphal@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research<sup> </sup> Uwe John, Uwe.John@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity Stefan Neuhaus, Stephan.neuhaus@awi.de, Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research<sup> </sup> Sylke Wohlrab, Sylke.wohlrab@awi.de, Alfred Wegener Institute Helmholtz Centre for Polar and Marine Research, and Helmholtz Institute for Functional Marine Biodiversity JOURNAL: MDPI - microorganisms MS-ID: microorganisms-746193 HOWTO: Sequences identified as Alveloates or Stramenopiles (description in manuscript) had been were classified more accurately by PhyloAssigner version 6.166 (https://github.com/jungbluth/phyloassigner, Vergin et al., 2013, DOI:10.1038/ismej.2013.32) with a phylogenetic placement onto reference trees based on 18S/28S concatenated alignments, according to Elferink et al. 2017 (DOI: 10.1016/j.dsr.2016.11.002). CONTENT: reference databases: - Alveolata_SSU-LSU-concat_310715_636.phyloassignerdb - Stramenopiles_SSU_LSU_concat_030815_1777.phyloassignerdb query sequence files: - Alveolata_seqtab_SIGN_dada2.fasta - Alveolata_seqtab_SIGN_dada2.fasta created output folder including the taxonomic annotation: - Alveolata_seqtab_SIGN_dada2.place.out - Stramenopiles_seqtab_SIGN_dada2.place.out text file containing the used commands: - commands
DOI: 10.5281/zenodo.3741831
title: Data of correlation of COVID-19 cases/deaths and the Gold price

description: The data was automatically computed by the tool https://doi.org/10.5281/zenodo.3741812 and shows the correlation between COVID-19 cases/deaths in a given time interval and the gold price in the same interval. The folder input_data contains the raw data that was used to produce this dataset.<br> The file TOOL_VERSION contains the version of the above reference tool that was used.
DOI: 10.5281/zenodo.3741832
title: Data of correlation of COVID-19 cases/deaths and the Gold price

description: The data was automatically computed by the tool https://doi.org/10.5281/zenodo.3741812 and shows the correlation between COVID-19 cases/deaths in a given time interval and the gold price in the same interval. The folder input_data contains the raw data that was used to produce this dataset.<br> The file TOOL_VERSION contains the version of the above reference tool that was used.
DOI: 10.15468/7mtkg0
title: Revision of Hesione Savigny in Lamarck, 1818 (Annelida, Errantia, Hesionidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Salazar-Vallejo, Sergio I. (2018): Revision of Hesione Savigny in Lamarck, 1818 (Annelida, Errantia, Hesionidae). Zoosystema 40 (12): 227-325, DOI: 10.5252/zoosystema2018v40a12
DOI: 10.5281/zenodo.3741811
title: WWV Doppler Shift Recording by AD8Y, 5 MHz, no GPSDO

description: Doppler shift data from WWV on 5 MHz. <strong>Callsign:</strong> AD8Y <strong>Radio:</strong> Kenwood TS-450 <strong>GPSDO:</strong> No <strong>Antenna:</strong> Random wire vertical <strong>Coordinates:</strong> (41.4067594 -75.6675467) <strong>Elevation:</strong> 914.8 feet <strong>Notes:</strong> The TXCO is intermittently calibrated against a GPSDO, but the system cannot be run off the GPSDO because signal leakage from it overwhelms the signal from WWV. Data collection was interrupted on some dates, including 31 December 2019 and 16 January 2020. This dataset is part of the Frequency Analysis Network project, collected according to the same process as the data for the Festival of Frequency Measurement (10.5281/zenodo.3707210).
description: {"references": ["10.5281/zenodo.3707210"]}
DOI: 10.5281/zenodo.3741428
title: Equity in allocating carbon dioxide removal quotas

description: Results and data for figures of the paper "Equity in allocating carbon dioxide removal quotas", 2020, Nature Climate Change
DOI: 10.25345/c5w68p
title: MassIVE MSV000085232 - Metaproteomics investigation on the gut microbiota of children affected by Autism Spectrum Disorder
title: Metaproteomics investigation of the Gut Microbiota in young subjects with Autism Spectrum Disorders and their relatives
DOI: 10.5258/soton/d1235
title: Dataset for "Novel method of lithium production from brines combining battery material and sodium sulphite as a cheap and environmentally friendly reducing agent"

description: Dataset supporting Article "Novel Method of Lithium Production from Brines Combining Battery Material and Sodium Sulfite as a Cheap and Environmentally Friendly Reducing Agent" in ACS Sustainable Chemistry & Engineering. 10.1021/acssuschemeng.9b07072
DOI: 10.25345/c5h128
title: MassIVE MSV000085235 - Thrombin-stimulated_p38-pathway_Phospho-proteomics
title: Phospho-proteomic analysis of Thrombin signaling in the presence and absence of a p38 inhibitor
DOI: 10.5519/qd.302lm2g8
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (39 records)
DOI: 10.15468/lh46os
title: A new species of Sasajiscymnus Vandenberg (Coleoptera: Coccinellidae) from Pakistan

description: This dataset contains the digitized treatments in Plazi based on the original journal article Iqbal, Zafar, Nasir, Muhammad Farooq, Bodlah, Imran (2020): A new species of Sasajiscymnus Vandenberg (Coleoptera: Coccinellidae) from Pakistan. Zootaxa 4759 (3): 379-390, DOI: https://doi.org/10.11646/zootaxa.4759.3.4
DOI: 10.5281/zenodo.3741434
title: Notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011

description: This dataset was extracted from NANDO, the website of the European Commission for notified bodies. It contains the list of notified bodies, horizontal specifications and harmonised standards for construction materials third party assessment according to the CPR - EU 305/2011
DOI: 10.5281/zenodo.3741673
title: TestRoutes Dataset for Test-to-Code Traceability

description: TestRoutes is a manually curated dataset aimed to enable the evaluation of test-to-code traceability methods. It contains the manually gathered traceability links of 4 open source software systems, suitable for both class and method level traceability link evaluation. This is the initial release for the publication of the dataset in the MSR 2020 Data Showcase track.
DOI: 10.5281/zenodo.3741674
title: TestRoutes Dataset for Test-to-Code Traceability

description: TestRoutes is a manually curated dataset aimed to enable the evaluation of test-to-code traceability methods. It contains the manually gathered traceability links of 4 open source software systems, suitable for both class and method level traceability link evaluation. This is the initial release for the publication of the dataset in the MSR 2020 Data Showcase track.
DOI: 10.3886/e118726
title: Replication Files: Land, Ladies, and the Law: A Case Study on Women’s Land Rights and Welfare in Southeast Asia in the Nineteenth Century

description: This study evaluates women’s de jure and de facto land rights and its implications for household welfare in nineteenth-century central Siam. Women constituted a significant proportion of agricultural landowners holding government-issued land deeds in central Siam—a pattern that stands in contrast to both historical and contemporary developing economy contexts where the structure of land rights often favors men. We find through both direct and indirect evidence that women’s de jure rights were upheld in practice. Women made significantly more agricultural investments than male or mixed-gender owners, which supports the assertion that women perceived their land rights as secure under Siam’s traditional usufruct land rights system. An assessment of land-related court cases directly supports our claim, showing that women in Siam had access to legal representation and were protected when their land rights were challenged by investors and local elites in the wake of increased demand for both agricultural and urban land due to a significant expansion in Siam’s international rice trade and Bangkok’s rapid urbanization. Such secure land rights helped preserve their livelihoods as agriculturists and household wellbeing. We estimate that the median woman-owned orchard plot could annually support ten adults, achieving a standard of living comparable to unskilled labourer households in Beijing and Milan during the same period.
description: Agricultural households.
DOI: 10.3886/e118726v1
title: Land, Ladies, and the Law: A Case Study on Women’s Land Rights and Welfare in Southeast Asia in the Nineteenth Century

description: This study evaluates women’s de jure and de facto land rights and its implications for household welfare in nineteenth-century central Siam. Women constituted a significant proportion of agricultural landowners holding government-issued land deeds in central Siam—a pattern that stands in contrast to both historical and contemporary developing economy contexts where the structure of land rights often favors men. We find through both direct and indirect evidence that women’s de jure rights were upheld in practice. Women made significantly more agricultural investments than male or mixed-gender owners, which supports the assertion that women perceived their land rights as secure under Siam’s traditional usufruct land rights system. An assessment of land-related court cases directly supports our claim, showing that women in Siam had access to legal representation and were protected when their land rights were challenged by investors and local elites in the wake of increased demand for both agricultural and urban land due to a significant expansion in Siam’s international rice trade and Bangkok’s rapid urbanization. Such secure land rights helped preserve their livelihoods as agriculturists and household wellbeing. We estimate that the median woman-owned orchard plot could annually support ten adults, achieving a standard of living comparable to unskilled labourer households in Beijing and Milan during the same period.
description: Agricultural households.
DOI: 10.5281/zenodo.3741677
title: Activation and selectivity of OTUB-1 and OTUB-2 deubiquitinylases

description: All prepared protein starting structures for OTUB1 and OTUB2, in different charged states and conformations corresponding to Ub-free and Ub-bound protein conformations. Topology files (top) which list the<em> </em>attributes of each atom for MD simulations with GROMACS.
DOI: 10.5281/zenodo.3741678
title: Activation and selectivity of OTUB-1 and OTUB-2 deubiquitinylases

description: All prepared protein starting structures for OTUB1 and OTUB2, in different charged states and conformations corresponding to Ub-free and Ub-bound protein conformations. Topology files (top) which list the<em> </em>attributes of each atom for MD simulations with GROMACS.
DOI: 10.26300/eybs-3s91
title: Three types of hypoglycemic agents (DPP- 4Is, GLP-1RAs, SGLT-2Is) for patients with type 2 diabetes: effectiveness and safety evaluation network meta-analysis
DOI: 10.15468/80uhxm
title: OSTEOLOGY OF TYRANNOSAURUS REX: INSIGHTS FROM A NEARLY COMPLETE SKELETON AND HIGH-RESOLUTION COMPUTED TOMOGRAPHIC ANALYSIS OF THE SKULL

description: This dataset contains the digitized treatments in Plazi based on the original journal article Christopher A. Brochu (2003): OSTEOLOGY OF TYRANNOSAURUS REX: INSIGHTS FROM A NEARLY COMPLETE SKELETON AND HIGH-RESOLUTION COMPUTED TOMOGRAPHIC ANALYSIS OF THE SKULL. Journal of Vertebrate Paleontology 22: 1-138, DOI: 10.2307/3889334
DOI: 10.15468/ot3rlr
title: New species of Tingidae (Insecta: Heteroptera) from Madagascar

description: This dataset contains the digitized treatments in Plazi based on the original journal article Guilbert, Eric (2020): New species of Tingidae (Insecta: Heteroptera) from Madagascar. Zootaxa 4759 (3): 391-404, DOI: https://doi.org/10.11646/zootaxa.4759.3.5
DOI: 10.5281/zenodo.3741447
title: 2013 mapping survey of South African laboratories

description: Mapping survey of laboratory facilities in South Africa conducted in 2013 as part of the ASSAf project: The State of Biosafety and Biosecurity in South Africa (see https://www.assaf.org.za/files/reports/evidence_based/Prelims.pdf)
DOI: 10.5281/zenodo.3741448
title: 2013 mapping survey of South African laboratories

description: Mapping survey of laboratory facilities in South Africa conducted in 2013 as part of the ASSAf project: The State of Biosafety and Biosecurity in South Africa (see https://www.assaf.org.za/files/reports/evidence_based/Prelims.pdf)
DOI: 10.25364/wegc/wps7.1:2020.1
title: WegenerNet climate station network Level 2 data
title: version 7.1 (2007–2019)

description: The WegenerNet weather and climate station network dataset provides highly space-time resolved measurements of meteorological parameters for two regions in the state of Styria, Austria. The WegenerNet Feldbach region is located in the southeast of Styria and has an extent of about 22 km x 16 km. It comprises 155 meteorological stations which are placed on a tightly spaced grid, with an average station density of 1 station per ~2 km². Data are available at a temporal sampling rate of 5 min. The WegenerNet Johnsbachtal is a smaller "sister network" of the WegenerNet Feldbach region. It comprises 13 meteorological and one hydrographic station located in an alpine environment, with station altitudes ranging from below 600 m to over 2100 m. The network extends over an area of about 16 km x 17 km and data are collected at 10 min sampling rate. This dataset contains station time series (as .csv files) for a large number of meteorological parameters and gridded data (as NetCDF files) for air temperature, relative humidity, precipitation, heat index, wind speed and direction, and wind gust speed and direction.
DOI: 10.5281/zenodo.3742209
title: Replication Package for "The State of Research on Function-as-a-Service Performance Evaluation: A Multivocal Literature Review"

description: This replication package contains the raw dataset, scripts to produce all plots, and documentation on how to replicate our MLR study on FaaS performance evaluation. <strong>Paper</strong> J. Scheuner and P. Leitner, “The State of Research on Function-as-a-Service Performance Evaluation: A Multivocal Literature Review,” 2020, Preprint, arXiv:2004.03276. Function-as-a-Service (FaaS) is one form of the serverless cloud computing paradigm and is defined through FaaS platforms (e.g., AWS Lambda) executing event-triggered code snippets (i.e., functions). Many studies that empirically evaluate the performance of such FaaS platforms have started to appear but we are currently lacking a comprehensive understanding of the overall domain. In our work, we survey existing research on FaaS performance evaluation and present results from a multivocal literature review (MLR) covering 112 studies from academic (51) and grey literature (61). We find that existing work heavily focuses on AWS Lambda and prevalently evaluates micro-benchmarks using simple functions to measure CPU speed and FaaS platform overhead (i.e., container cold starts). Further, we identify a mismatch between academic and industrial sources on tested platform configurations, conclude that function triggers remain insufficiently studied, and list HTTP API gateways and cloud storages as the most used external service integrations. Following existing guidelines on experimentation in cloud systems, we discover many flaws threatening the reproducibility of experiments presented in the surveyed studies. We conclude with a discussion of gaps in literature and highlight methodological suggestions that may serve to improve future FaaS performance evaluation studies. <strong>Dataset</strong> All extracted data originating from academic and grey literature studies is available as machine-readable CSV (./data/faas_mlr_raw.csv) and human-readable XLSX (./data/faas_mlr_raw.xlsx). The Excel file also contains all 700+ comments with guidance, decision rationales, and extra information. It is configured with a filtered view to display only <em>relevant</em> sources but contains the complete data (i.e., including discussion for sources considered to be <em>not relevant</em> in our context). Find further documentation in the README.md or on Github: https://github.com/joe4dev/faas-performance-mlr/
DOI: 10.25387/g3.11962158
title: Supplemental Material for Arlt et al., 2020

description: Supplemental Table 1 contains RT-PCR primer sequences. Supplemental Table 2 contains primer pairs used in RT-PCR assays. Supplemental Table 3 contains oligos used to generate and genotype transgenic mice. Supplemental Figure 1 displays a self-symmetry triangular dot plot of the <i>Srsx</i>-containing ampliconic region on the X. Supplemental Figure 2 is a dot plot of DNA sequence identity between two <i>Srsx</i>-containing X amplicons. Supplemental Figure 3 shows low level of expression from the Y of sequences with homology to <i>Laidx</i>. Supplemental Figure 4 shows <i>Laidx</i> expression exclusively in the testis. Supplemental Figure 5 shows all RT=PCR assays used to characterize <i>Ladix</i>. Supplemental Figure 6 displays IUPred2A output with high probability of disorder across the LAIDX protein. Supplemental Figure 7 shows dotplots comparing mouse and rat <i>Laidx</i> genes. Supplemental Figure 8 is a dotplot comparing rat <i>Laidx </i>to the rat Y chromosome. Supplemental Figure 9 contains dotplots showing similarity of rat <i>Laidx</i> to a <i>Clonorchis </i>gene. Supplemental Figure 10 displays Periodic-acid Schiff stained testis histology from WT and <i>Laidx</i>-/Y males demonstrating normal development and morphology.
DOI: 10.25387/g3.11962158.v1
title: Supplemental Material for Arlt et al., 2020

description: Supplemental Table 1 contains RT-PCR primer sequences. Supplemental Table 2 contains primer pairs used in RT-PCR assays. Supplemental Table 3 contains oligos used to generate and genotype transgenic mice. Supplemental Figure 1 displays a self-symmetry triangular dot plot of the <i>Srsx</i>-containing ampliconic region on the X. Supplemental Figure 2 is a dot plot of DNA sequence identity between two <i>Srsx</i>-containing X amplicons. Supplemental Figure 3 shows low level of expression from the Y of sequences with homology to <i>Laidx</i>. Supplemental Figure 4 shows <i>Laidx</i> expression exclusively in the testis. Supplemental Figure 5 shows all RT=PCR assays used to characterize <i>Ladix</i>. Supplemental Figure 6 displays IUPred2A output with high probability of disorder across the LAIDX protein. Supplemental Figure 7 shows dotplots comparing mouse and rat <i>Laidx</i> genes. Supplemental Figure 8 is a dotplot comparing rat <i>Laidx </i>to the rat Y chromosome. Supplemental Figure 9 contains dotplots showing similarity of rat <i>Laidx</i> to a <i>Clonorchis </i>gene. Supplemental Figure 10 displays Periodic-acid Schiff stained testis histology from WT and <i>Laidx</i>-/Y males demonstrating normal development and morphology.
DOI: 10.18430/m36w4h
title: X-ray diffraction data for the 1.80 Angstrom Resolution Crystal Structure of NSP16 - NSP10 Complex from SARS-CoV-2 (6W4H)
DOI: 10.18430/m36w75
title: X-ray diffraction data for the 1.95 Angstrom Resolution Crystal Structure of NSP10 - NSP16 Complex from SARS-CoV-2 (6W75)
DOI: 10.5281/zenodo.3739215
title: Fact Sheet: Introduction Virtual Research Environments and Overview

description: <strong>English:</strong> Virtual Research Environments (VREs) are digital working platforms which enable scienctists to work cooperatively in a time- and location-independent way. Due to the increase of digital research data and the international collaboration of researchers, VREs gain in importance. Numerous VREs have been developed in different projects to support the work of researchers in a variety of disciplines. However, the thematic focus and functionality differ between available VREs. The new fact sheet summarizes important information about and requirements for VREs. In addition to the fact sheet we developed a summary of currently existing VREs for different disciplines which gives an overview over their scope and functionality. ------------------------------------------- <strong>German:</strong> Virtuelle Forschungsumgebungen (VFUs) sind digitale Arbeitsplattformen, die es Wissenschaftlern ermöglichen zeit- und ortsunabhängig vernetzt zusammenzuarbeiten. Durch die Zunahme an digitalen Forschungsdaten und die stärkere internationale Zusammenarbeit von Wissenschaftlern gewinnen diese Anwendungen an Bedeutung. In den letzten Jahren wurden in zahlreichen Projekten neue VFUs für verschiedene Fachdisziplinen entwickelt. Dabei sind der thematische Schwerpunkt und der Funktionsumfang der verschiedenen VFUs sehr unterschiedlich. Mit der neuen Handreichung möchten wir allen Interessierten wichtige Informationen rund um das Thema VFU zur Verfügung stellen und einen Überblick über momentan verfügbare Systeme geben. Zusätzlich zu der Handreichung haben wir eine Zusammenfassung mit Informationen zu Virtuellen Forschungsumgebungen aus verschiedenen Fachbereichen zusammengestellt. <strong>Daten in der Tabelle:</strong> Name der Virtuellen Forschungsumgebung Fachgebiet Offenheit Zugänglichkeit Verfügbarkeit von Informationen zum Betriebs-/Nutzungsmodell Read-Only Themengebunden Möglichkeit der Verwaltung eigener Daten Eigene Daten zugriffsbeschränkt Link
DOI: 10.5281/zenodo.3741904
title: A model of the subpacket structure of rising tone chorus emissions - wave data

description: This file contains the wave data obtained from simulation and used in the paper "A model of the subpacket structure of rising tone chorus emissions" submitted to JGR:Space Physics. All data are in Python Numpy binaries. Files hs.npy and ts.npy contain 1D numpy arrays of space and time coordinates of the grid covering the simulation domain. Files mus_full.npy, oms_full.npy, omws_fill.npy and phs_full.npy contain 2D numpy arrays of the refractive index, normalized wave frequency, normalized wave amplitude and wave phase, respectively. File tinds.npy gives the starting and ending points in time of each subpacket, at the spatial coordinate of the source. File input.dat contains a dictionary type data with input parameters used in the simulation.
DOI: 10.5281/zenodo.3741903
title: A model of the subpacket structure of rising tone chorus emissions - wave data

description: This file contains the wave data obtained from simulation and used in the paper "A model of the subpacket structure of rising tone chorus emissions" submitted to JGR:Space Physics. All data are in Python Numpy binaries. Files hs.npy and ts.npy contain 1D numpy arrays of space and time coordinates of the grid covering the simulation domain. Files mus_full.npy, oms_full.npy, omws_fill.npy and phs_full.npy contain 2D numpy arrays of the refractive index, normalized wave frequency, normalized wave amplitude and wave phase, respectively. File tinds.npy gives the starting and ending points in time of each subpacket, at the spatial coordinate of the source. File input.dat contains a dictionary type data with input parameters used in the simulation.
DOI: 10.5519/qd.owq5izu6
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (96 records)
DOI: 10.5519/qd.sgd6oqcd
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.6084/m9.figshare.3761562.v1444
title: Online Labour Index: Measuring the Online Gig Economy for Policy and Research

description: Data repository for the data underlying the Online Labour Index. See http://ilabour.oii.ox.ac.uk online-labour-index/ for details.
DOI: 10.5519/qd.3o5vpikm
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (8 records)