cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.13145/bacdive146977.20211221.6
title: Paenibacillus amylolyticus

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146978.20211221.6
title: Lactobacillus gasseri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146979.20211221.6
title: Citrobacter braakii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146980.20211221.6
title: Staphylococcus epidermidis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146981.20211221.6
title: Staphylococcus warneri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146982.20211221.6
title: Staphylococcus warneri

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146983.20211221.6
title: Corynebacterium amycolatum

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146984.20211221.6
title: Winkia neuii

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146985.20211221.6
title: Serratia fonticola

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive146986.20211221.6
title: Streptococcus mitis

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.21227/s60t-zh79
title: LUMEDICA-Skin Data-Raha Razavi

description: We provide a data set captured using a LUMEDICA OQLABSCOPE imaging device to perform our numerical experiences. This data set includes eleven OCT images of healthy skin and each image has the size of $512 \times 512$ pixels.
DOI: 10.5519/qd.klio056o
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1 records)
DOI: 10.5281/zenodo.7673982
title: Dataset related to article: " ENTROPY METRICS CORRELATING WITH HIGHER RESIDUAL FUNCTIONING IN PATIENTS WITH CHRONIC DISORDERS OF CONSCIOUSNESS "

description: the dataset contains data ENTROPY MEASURES
description: Funding: Italian Ministry of Health (Ricerca Corrente)
DOI: 10.5281/zenodo.7673981
title: Dataset related to article: " ENTROPY METRICS CORRELATING WITH HIGHER RESIDUAL FUNCTIONING IN PATIENTS WITH CHRONIC DISORDERS OF CONSCIOUSNESS "

description: the dataset contains data ENTROPY MEASURES
description: Funding: Italian Ministry of Health (Ricerca Corrente)
DOI: 10.34740/kaggle/dsv/5056132
title: YouTube Daily
DOI: 10.6084/m9.figshare.22153859
title: Raw Data for The Bovine Umbilical Vein Endothelial Cells Conditioned Medium Prevents TMT-Induced Neurotoxicity Mediated by the Upregulation of Brain-Derived Neurotropic Factors on the Human Neuroblastoma SH-SY5Y Cells

description: The data provide the raw data as a supplementary data for research entitled The Bovine Umbilical Vein Endothelial Cells Conditioned Medium Prevents TMT-Induced Neurotoxicity Mediated by the Upregulation of Brain-Derived Neurotropic Factors on the Human Neuroblastoma SH-SY5Y Cells, and consist of : Raw data from RT-qPCR Raw data of flow cytometry counts Figure raw of AO/PI staining images Figure raw of Hoechst staining for the cells morphology Raw data of ELISA absorbance values Figure of ELISA standard curve Figure of scratch area and raw images used in ImageJ for scratch wound assay Raw data of absorbance values for the adhesion test (CCK test) Raw absorbance values for the viability test (MTT assay)
DOI: 10.6084/m9.figshare.22153859.v1
title: Raw Data for The Bovine Umbilical Vein Endothelial Cells Conditioned Medium Prevents TMT-Induced Neurotoxicity Mediated by the Upregulation of Brain-Derived Neurotropic Factors on the Human Neuroblastoma SH-SY5Y Cells

description: The data provide the raw data as a supplementary data for research entitled The Bovine Umbilical Vein Endothelial Cells Conditioned Medium Prevents TMT-Induced Neurotoxicity Mediated by the Upregulation of Brain-Derived Neurotropic Factors on the Human Neuroblastoma SH-SY5Y Cells, and consist of : Raw data from RT-qPCR Raw data of flow cytometry counts Figure raw of AO/PI staining images Figure raw of Hoechst staining for the cells morphology Raw data of ELISA absorbance values Figure of ELISA standard curve Figure of scratch area and raw images used in ImageJ for scratch wound assay Raw data of absorbance values for the adhesion test (CCK test) Raw absorbance values for the viability test (MTT assay)
DOI: 10.5255/ukda-sn-856114
title: Student Loneliness and Social Connectedness Data, 2021

description: We took a sequential mixed-methods approach. First, drawing upon the principles of Participatory Action Research, we conducted stakeholder-led (i.e. student-led) focus groups with a diverse group of 13 students to explore their experiences of social connectedness at university before, during, and beyond the pandemic (Study 1). We conducted three rounds of focus groups (3-5 participants per group) using a semi-structured template. This yielded qualitative data in the form of transcripts. ***(Focus groups .zip)*** Then, we used themes emerging from the focus group data to inform an online survey about social connectedness to test the generalisability of the focus group results in 44 students (Study 2). This yielded both quantitative (closed question) and qualitative (open question) data. ***(Online survey .zip)*** Raw data, participant briefs, debriefs, and consent forms, templates and questionnaires are all within the zip files. ***Please refer to the READ ME file within each .zip folder*** Qualitative data derived from focus groups conducted with students on their experiences of loneliness and social connectedness at university. Quantitative data from an online survey on student experiences of loneliness and social connectedness.
DOI: 10.6084/m9.figshare.21732635
title: Predictive characteristics for disease recurrence and overall survival in non-metastatic clinical T1 renal cell carcinoma – results from the National Swedish Kidney Cancer Register

description: Patients with clinical T1 renal cell carcinoma (cT1RCC) have risks for recurrence and reduced overall survival despite being in the best prognostic group. This study aimed to evaluate the association of different treatments on disease recurrence and overall survival using clinical and pathological characteristics in a nation-wide cT1RCC cohort. A total of 4,965 patients, registered in the National Swedish Kidney Cancer Register (NSKCR) between 2005 and 2014, with ≥ 5-years follow-up were identified: 3,040 males and 1,925 females, mean age 65 years. Times to recurrence and overall survival were analyzed with Kaplan-Meier curves, log-rank test, and Cox regression models. Age, TNM-stage, tumor size, RCC-type, and performed treatment were all associated with disease recurrence. Patients selected for ablative treatments had increased risk for recurrent disease: hazard ratio (HR) = 3.79 [95% confidence interval (CI) = 2.69–5.32]. In multivariate analyses, age, gender, tumor size, RCC-type, N-stage, recurrence and performed treatment were all independently associated with overall survival. Patients with chRCC had a 41% better overall survival (HR = 0.59, 95% CI = 0.44–0.78; <i>p</i> &lt; 0.001) than ccRCC. Patients treated with partial nephrectomy (PN) had an 18% better overall survival (HR = 0.83, 95% CI = 0.71–0.95, <i>p</i> &lt; 0.001) than patients treated with radical nephrectomy. Age, gender, T-stage, tumor size, RCC type and treatment modality are all associated with risk of recurrence. Furthermore, age, male gender, tumor size, N-stage and recurrence are associated with reduced overall survival. Patients with chRCC, compared with ccRCC and pRCC patients, and PN compared with RN treated patients, had an advantageous overall survival, indicating a possible survival advantage of nephron sparing treatment.
DOI: 10.6084/m9.figshare.21971563
title: External validation of a simplified prognostic model for survival in patients with extrinsic malignant ureteral obstruction treated with tandem ureteral stents – a retrospective cohort study

description: Prognostic models of survival can identify patients with extrinsic malignant ureteral obstruction who will benefit from long-term drainage as offered by tandem ureteral stents. The study aims to validate a simplified prognostic model published by Cordeiro et al. and to identify additional prognostic predictors in a cohort of patients drained solely with tandem ureteral stents. Medical records of consecutive patients who underwent drainage of malignant ureteral obstruction with tandem ureteral stents between 2007 and 2020 were reviewed retrospectively; patients with benign ureteral obstruction were excluded. Risk factors for survival included were: [1] the number of malignancy-related events (categorized as ≥4 and &lt;4) and [2] the Eastern Cooperative Oncology Group Index (categorized as ≥2 and &lt;2)]. Patients with ≥1 risk factor were grouped as intermediate-unfavorable risk and those without risk factors as favorable risk. The Kaplan–Meier and log-rank tests were used for survival analysis. Univariable and multivariable Cox regression analyses were used to identify predictors of outcome. The study cohort consisted of 65 patients; the median age was 60 years (IQR 51–72). The median follow-up time from diagnosis of hydronephrosis was 51 months (IQR 38–64). Estimated probabilities of survival at 1 month, 6 months 1 year, and 2 years were 100%, 87%, 75% and 57%, respectively in the favorable risk group (<i>n</i> = 40), and in the intermediate-unfavorable risk group (<i>n</i> = 25), 96%, 72%, 52%, and 20%, respectively, (<i>p</i> = .003). On multivariable analysis, the presence of ≥4 malignancy-related events (HR = 2.04, 95% CI [1.07–3.86], <i>p</i> = .03) and lung metastasis (HR = 2.37, 95% CI [1.0–5.6], <i>p</i> = .05) were associated with shorter survival. Our findings validate the prognostic model published by Cordeiro et al. The model can be applied when counseling patients being considered for drainage with tandem ureteral stents.
DOI: 10.6084/m9.figshare.21971563.v1
title: External validation of a simplified prognostic model for survival in patients with extrinsic malignant ureteral obstruction treated with tandem ureteral stents – a retrospective cohort study

description: Prognostic models of survival can identify patients with extrinsic malignant ureteral obstruction who will benefit from long-term drainage as offered by tandem ureteral stents. The study aims to validate a simplified prognostic model published by Cordeiro et al. and to identify additional prognostic predictors in a cohort of patients drained solely with tandem ureteral stents. Medical records of consecutive patients who underwent drainage of malignant ureteral obstruction with tandem ureteral stents between 2007 and 2020 were reviewed retrospectively; patients with benign ureteral obstruction were excluded. Risk factors for survival included were: [1] the number of malignancy-related events (categorized as ≥4 and &lt;4) and [2] the Eastern Cooperative Oncology Group Index (categorized as ≥2 and &lt;2)]. Patients with ≥1 risk factor were grouped as intermediate-unfavorable risk and those without risk factors as favorable risk. The Kaplan–Meier and log-rank tests were used for survival analysis. Univariable and multivariable Cox regression analyses were used to identify predictors of outcome. The study cohort consisted of 65 patients; the median age was 60 years (IQR 51–72). The median follow-up time from diagnosis of hydronephrosis was 51 months (IQR 38–64). Estimated probabilities of survival at 1 month, 6 months 1 year, and 2 years were 100%, 87%, 75% and 57%, respectively in the favorable risk group (<i>n</i> = 40), and in the intermediate-unfavorable risk group (<i>n</i> = 25), 96%, 72%, 52%, and 20%, respectively, (<i>p</i> = .003). On multivariable analysis, the presence of ≥4 malignancy-related events (HR = 2.04, 95% CI [1.07–3.86], <i>p</i> = .03) and lung metastasis (HR = 2.37, 95% CI [1.0–5.6], <i>p</i> = .05) were associated with shorter survival. Our findings validate the prognostic model published by Cordeiro et al. The model can be applied when counseling patients being considered for drainage with tandem ureteral stents.
DOI: 10.6084/m9.figshare.21732635.v1
title: Predictive characteristics for disease recurrence and overall survival in non-metastatic clinical T1 renal cell carcinoma – results from the National Swedish Kidney Cancer Register

description: Patients with clinical T1 renal cell carcinoma (cT1RCC) have risks for recurrence and reduced overall survival despite being in the best prognostic group. This study aimed to evaluate the association of different treatments on disease recurrence and overall survival using clinical and pathological characteristics in a nation-wide cT1RCC cohort. A total of 4,965 patients, registered in the National Swedish Kidney Cancer Register (NSKCR) between 2005 and 2014, with ≥ 5-years follow-up were identified: 3,040 males and 1,925 females, mean age 65 years. Times to recurrence and overall survival were analyzed with Kaplan-Meier curves, log-rank test, and Cox regression models. Age, TNM-stage, tumor size, RCC-type, and performed treatment were all associated with disease recurrence. Patients selected for ablative treatments had increased risk for recurrent disease: hazard ratio (HR) = 3.79 [95% confidence interval (CI) = 2.69–5.32]. In multivariate analyses, age, gender, tumor size, RCC-type, N-stage, recurrence and performed treatment were all independently associated with overall survival. Patients with chRCC had a 41% better overall survival (HR = 0.59, 95% CI = 0.44–0.78; <i>p</i> &lt; 0.001) than ccRCC. Patients treated with partial nephrectomy (PN) had an 18% better overall survival (HR = 0.83, 95% CI = 0.71–0.95, <i>p</i> &lt; 0.001) than patients treated with radical nephrectomy. Age, gender, T-stage, tumor size, RCC type and treatment modality are all associated with risk of recurrence. Furthermore, age, male gender, tumor size, N-stage and recurrence are associated with reduced overall survival. Patients with chRCC, compared with ccRCC and pRCC patients, and PN compared with RN treated patients, had an advantageous overall survival, indicating a possible survival advantage of nephron sparing treatment.
DOI: 10.6084/m9.figshare.21939690
title: Incidence of erectile dysfunction treatment after radical prostatectomy by Statin use in Finnish Nationwide Cohort Study

description: Erectile dysfunction (ED) is common after radical prostatectomy (RP) due to cavernous nerve damage. Risk of ED is also affected by vascular function. Statins prevent vascular events but their association with post-prostatectomy ED is unclear. We explored the likelihood of starting ED treatment after RP by statin use at the population level. The study cohort included 14,295 prostate cancer (PCa) patients with no ED treatment prior to diagnosis of PCa treated with RP in Finland during 1995–2013. Information on use of cholesterol-lowering drugs and ED medication during 1995–2014 and penile prosthesis implantation during 1996–2014 were gathered from national registries. Risk of ED treatment initiation after RP was analyzed by pre-diagnostic and post-diagnostic statin and non-statin cholesterol lowering (NSCL) drug use with Cox regression model. Pre-diagnostic statin use or NSCL drug use overall had no association with risk of ED treatment initiation after RP. Post-diagnostic statin use was associated with a slightly increased risk of initiation of any ED treatment (HR = 1.07; 95% CI = 1.01–1.14). Patients with the longest duration of post-diagnostic statin use had a significantly decreased risk of PDE5 inhibitor initiation compared to non-users (HR = 0.43; 95% CI = 0.20–0.94). Among patients with no cardiovascular comorbidities, pre-diagnostic statin users had a significantly increased risk of initiation of injectable ED drugs (HR = 1.27; 95% CI = 1.04–1.55), however, no association with risk of any other ED treatment was observed. Statin users have a slightly increased risk of ED treatment initiation after RP, which probably reflects the effect of the underlying vascular insufficiency.
DOI: 10.6084/m9.figshare.21939690.v1
title: Incidence of erectile dysfunction treatment after radical prostatectomy by Statin use in Finnish Nationwide Cohort Study

description: Erectile dysfunction (ED) is common after radical prostatectomy (RP) due to cavernous nerve damage. Risk of ED is also affected by vascular function. Statins prevent vascular events but their association with post-prostatectomy ED is unclear. We explored the likelihood of starting ED treatment after RP by statin use at the population level. The study cohort included 14,295 prostate cancer (PCa) patients with no ED treatment prior to diagnosis of PCa treated with RP in Finland during 1995–2013. Information on use of cholesterol-lowering drugs and ED medication during 1995–2014 and penile prosthesis implantation during 1996–2014 were gathered from national registries. Risk of ED treatment initiation after RP was analyzed by pre-diagnostic and post-diagnostic statin and non-statin cholesterol lowering (NSCL) drug use with Cox regression model. Pre-diagnostic statin use or NSCL drug use overall had no association with risk of ED treatment initiation after RP. Post-diagnostic statin use was associated with a slightly increased risk of initiation of any ED treatment (HR = 1.07; 95% CI = 1.01–1.14). Patients with the longest duration of post-diagnostic statin use had a significantly decreased risk of PDE5 inhibitor initiation compared to non-users (HR = 0.43; 95% CI = 0.20–0.94). Among patients with no cardiovascular comorbidities, pre-diagnostic statin users had a significantly increased risk of initiation of injectable ED drugs (HR = 1.27; 95% CI = 1.04–1.55), however, no association with risk of any other ED treatment was observed. Statin users have a slightly increased risk of ED treatment initiation after RP, which probably reflects the effect of the underlying vascular insufficiency.
DOI: 10.5281/zenodo.7674005
title: Dataset related to article: "GRASPING THE SEMANTIC OF ACTIONS: A COMBINED BEHAVIORAL AND MEG STUDY"

description: <strong>virtual channel data</strong>
description: Funding: Italian Ministry of Health
DOI: 10.5281/zenodo.7674004
title: Dataset related to article: "GRASPING THE SEMANTIC OF ACTIONS: A COMBINED BEHAVIORAL AND MEG STUDY"

description: <strong>virtual channel data</strong>
description: Funding: Italian Ministry of Health
DOI: 10.34740/kaggle/dsv/5056161
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.5517/ccdc.csd.cc2dcjw6
title: CCDC 2215628: Experimental Crystal Structure Determination

description: Related Article: Kai-Hong Lv, Li Chen, Ke-hua Zhao, Jia-Ming Yang, Sheng-Jiao Yan|2023|J.Org.Chem.|88|2358|doi:10.1021/acs.joc.2c02757
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5519/qd.l3parxnx
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (1001 records)
DOI: 10.5517/ccdc.csd.cc2dh9z6
title: CCDC 2219258: Experimental Crystal Structure Determination

description: Related Article: Kanniyappan Silambarasan, Gangarajulu Kesavulu, Arava Amaranadha Reddy, Kavirayani R. Prasad|2023|J.Org.Chem.|88|2006|doi:10.1021/acs.joc.2c02227
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5281/zenodo.7650420
title: A past and present perspective on the European summer vapour pressure deficit

description: Here, we present the first gridded reconstruction of the European summer vapour pressure deficit (VPD) for the past four centuries (see https://doi.org/10.5194/essd-2022-47 for the study). The gridded reconstruction is based on 26 European tree-ring oxygen isotope records and is performed using a Random Forest approach. Furthermore, we provide summer VPD data derived from 20CRV3 for the period 1836 to 2015 (Slivinski et al., 2019). The data is structured as follows: VPD_final_nested_reconstruction.nc -&gt; contains the summer VPD reconstruction for the past 400 years CE_final_*_.nc -&gt; provides the Coefficient of Efficiency metric for each time slice of the rec. (Nash and Sutcliffe, 1970) VPD_20CR_JJA.nc -&gt; VPD data derived from 20CRV3 for the period 1836 to 2015 (Slivinski et al., 2019)
DOI: 10.5281/zenodo.7384399
title: Verhagen et al Chicxulub Upper Peak Ring SEM EPMA and Images

description: READ ME file to be used along with data files in Zenodo for the manuscript: <strong>Significance of Secondary Fe-Oxide and Fe-Sulfide Minerals in Upper Peak Ring Suevite from the Chicxulub Impact Structure</strong> Christina M. Verhagen, Ji-In Jung, Sonia M. Tikoo, Axel Wittmann, David A. Kring, Stefanie Brachfeld, Laying Wu, Dale H. Burns, Sean P. S. Gulick “Image” files include: Back scattered electron images (tiff, bmp, pdf) produced by scanning electron microscopy for figures 3, 5, 6 and 8 in the main manuscript. Images are labeled with the figure number and letter which corresponds to the main figure (e.g., Fig. 3a is the image shown in Figure 3-part a). “EDS” includes raw files (psmsa and xlsx) from energy dispersive x-ray spectroscopy which were used to produce the spectral analysis shown in figures 4, 5 and 7. Data files are labeled with the figure number and letter which corresponds to the main figure (e.g., Fig. 4a is the data used to produce the spectra shown in Figure 4-part a). “WDS” file includes an xlsx table showing the wavelength dispersive spectroscopy generated elemental abundances for the Fe-sulfides shown in Figure 8b-d (same as in main text).