cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.z6gzfa
title: Occurrence Download

description: A dataset containing 117685638 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "TaxonKey is Lepidoptera",
 "DistanceFromCentroidInMeters is greater than or equal to 1000",
 "Year is greater than or equal to 2000"
 ]
}

 The dataset includes 117685638 records from 9794 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053411-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.234y77
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Amphibia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.8265154704006 7.1857035356908,-74.676588991389 7.1857035356908,-74.676588991389 7.34917781746346,-74.8265154704006 7.34917781746346,-74.8265154704006 7.1857035356908))"
 ]
}

 The dataset includes 4 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000600-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8ajqwn
title: Occurrence Download

description: A dataset containing 13499 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pogona barbata (Cuvier, 1829)"
 ]
}

 The dataset includes 13499 records from 81 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000599-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.60520/ieda/113550
title: Bulk-rock geochemical analysis of Mid-Miocene lavas from Lothagam, Kenya

description: Major, trace element, and isotopic analysis of Miocene lavas from the Turkana Depression of the East African Rift System, Kenya. The purpose of this dataset is to assess the potential contribution of enriched continental lithospheric mantle sources to mafic magmatism in the Turkana Depression.
DOI: 10.5281/zenodo.14217157
title: Global comparative structural analysis of responses to protein phosphorylation

description: This contains the structures and data used for the structural analysis presented in Global comparative structural analysis of responses to protein phosphorylation (Correa Marrero et al., https://doi.org/10.1101/2024.10.18.617420 ). To summarize:



filtered_df.xlsx: dataset of paired phosphorylated structures and their non-phosphorylated counterparts. Each row contains one such pair.

chains_by_protein.zip: each directory (named with a UniProt ID) contains the used structures that form the basis for the analysis. The structures are in PDB format, in a separate directory for each protein in the dataset. The exception is the annotation_per_psite directory, which contains annotation as a csv file for each phosphosite.

extracted_domains.zip: contains structures of Pfam domains (extracted from the previous dataset) in PDB format. Each filename follows the format {PDB ID}_{Chain ID}_{Pfam domain ID}. The domain_coverage.csv file lists the domain coverage of the structure, as well as its length compared to the whole sequence and the whole structure it was extracted from. These are the structures used for the analysis shown in Fig. 1 f-h.

extracted_pfam_domains.zip: contains structures of a broader set Pfam domain structures (the whole set of Pfam domains found to contain a phosphosite in filtered_df.csv) in PDB format. Each directory (named with the Pfam ID) contains the structures. merged_pfam_data.tsv contains metadata about the structures (structure quality, coverage of the domain structure, phosphosite location...). These are the structures used for the analysis shown in Fig. 2.
DOI: 10.5281/zenodo.14217158
title: Global comparative structural analysis of responses to protein phosphorylation

description: This contains the structures and data used for the structural analysis presented in Global comparative structural analysis of responses to protein phosphorylation (Correa Marrero et al., https://doi.org/10.1101/2024.10.18.617420 ). To summarize:



filtered_df.xlsx: dataset of paired phosphorylated structures and their non-phosphorylated counterparts. Each row contains one such pair.

chains_by_protein.zip: each directory (named with a UniProt ID) contains the used structures that form the basis for the analysis. The structures are in PDB format, in a separate directory for each protein in the dataset. The exception is the annotation_per_psite directory, which contains annotation as a csv file for each phosphosite.

extracted_domains.zip: contains structures of Pfam domains (extracted from the previous dataset) in PDB format. Each filename follows the format {PDB ID}_{Chain ID}_{Pfam domain ID}. The domain_coverage.csv file lists the domain coverage of the structure, as well as its length compared to the whole sequence and the whole structure it was extracted from. These are the structures used for the analysis shown in Fig. 1 f-h.

extracted_pfam_domains.zip: contains structures of a broader set Pfam domain structures (the whole set of Pfam domains found to contain a phosphosite in filtered_df.csv) in PDB format. Each directory (named with the Pfam ID) contains the structures. merged_pfam_data.tsv contains metadata about the structures (structure quality, coverage of the domain structure, phosphosite location...). These are the structures used for the analysis shown in Fig. 2.
DOI: 10.15468/dl.yayv4a
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Plantae)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.8265154704006 7.1857035356908,-74.676588991389 7.1857035356908,-74.676588991389 7.34917781746346,-74.8265154704006 7.34917781746346,-74.8265154704006 7.1857035356908))"
 ]
}

 The dataset includes 16 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000601-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.embg25
title: Occurrence Download

description: A dataset containing 2151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Clinotarsus curtipes (Jerdon, 1853), Duttaphrynus brevirostris (Rao, 1937), Duttaphrynus melanostictus (Schneider, 1799), Duttaphrynus microtympanum (Boulenger, 1882), Duttaphrynus parietalis (Boulenger, 1882), Indirana duboisi Dahanukar, Modak, Krutha, Nameer, Padhye & Molur, 2016, Indosylvirana indica (Biju, Garg, Mahony, Wijayathilaka, Senevirathne & Meegaskumbura, 2014), Indosylvirana intermedia (Rao, 1937), Micrixalus elegans (Rao, 1937), Micrixalus kottigeharensis (Rao, 1937), Microhyla sholigari Dutta & Ray, 2000, Minervarya mysorensis (Rao, 1922), Minervarya nilagirica (Jerdon, 1853), Nyctibatrachus kempholeyensis (Rao, 1937), Nyctibatrachus sylvaticus Rao, 1937, Pedostibes tuberculosus Günther, 1876, Polypedates occidentalis Das & Dutta, 2006, Pseudophilautus wynaadensis (Jerdon, 1853), Raorchestes glandulosus (Jerdon, 1853), Raorchestes luteolus (Kuramoto & Joshy, 2003), Raorchestes hassanensis (Dutta, 1985), Raorchestes tuberohumerus (Kuramoto & Joshy, 2003), Rhacophorus lateralis Boulenger, 1883, Rhacophorus malabaricus Jerdon, 1870, Uperodon mormoratus (Rao, 1937), Uperodon taprobanicus (Parker, 1934), Uperodon triangularis (Günther, 1876))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2010",
 "Country is India",
 "BasisOfRecord is one of (Human Observation)",
 "CoordinateUncertaintyInMeters is less than 2000"
 ]
}

 The dataset includes 2151 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000602-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ztatv5
title: Occurrence Download

description: A dataset containing 1636 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Acacia acuminata Benth."
 ]
}

 The dataset includes 1636 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000604-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p7x82y
title: Occurrence Download

description: A dataset containing 16943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.44.227_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata",
 "Year 2024-2024"
 ]
}

 The dataset includes 16943 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000603-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4f3kgw
title: Occurrence Download

description: A dataset containing 10058 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "GadmGid is MEX.13_1",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 10058 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000605-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ruu2zb
title: Occurrence Download

description: A dataset containing 581 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Aves)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.7247943107069 7.10829954701488,-74.6382262413479 7.10829954701488,-74.6382262413479 7.26438314688431,-74.7247943107069 7.26438314688431,-74.7247943107069 7.10829954701488))"
 ]
}

 The dataset includes 581 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000608-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrx7uu
title: Occurrence Download

description: A dataset containing 10211 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.02597 6.44038,-74.77742 6.44038,-74.77742 6.62672,-75.02597 6.62672,-75.02597 6.44038))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata"
 ]
}

 The dataset includes 10211 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000609-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rzacaw
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Mammalia)",
 "HasCoordinate is one of (true)",
 "Geometry POLYGON((-74.7247943107069 7.10829954701488,-74.6382262413479 7.10829954701488,-74.6382262413479 7.26438314688431,-74.7247943107069 7.26438314688431,-74.7247943107069 7.10829954701488))"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000610-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a2yv5d
title: Occurrence Download

description: A dataset containing 1153 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is one of (University of British Columbia Herbarium (UBC) - Bryophytes Collection, University of British Columbia Herbarium (UBC) - Vascular Plant Collection, University of British Columbia Herbarium (UBC) - Algae Collection, University of British Columbia - Spencer Entomological Collection (UBCZ), University of British Columbia Herbarium (UBC) - Lichen Collection, University of British Columbia Herbarium (UBC) - Fungi Collection, Cowan Tetrapod Collection - Mammals, Cowan Tetrapod Collection - Birds, Cowan Tetrapod Collection - Herpetology, Beaty Biodiversity Museum Fish Collection)",
 "TaxonKey is one of (Amphibia)"
 ]
}

 The dataset includes 1153 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000611-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ncsau3
title: Occurrence Download

description: A dataset containing 16943 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is USA.44.227_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Chordata",
 "Year 2024-2024"
 ]
}

 The dataset includes 16943 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000612-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y2gu8y
title: Occurrence Download

description: A dataset containing 2917883348 species occurrences available in GBIF matching the query:
{
 "HasCoordinate" : [
 "is true"
 ]
}

 The dataset includes 2917883348 records from 60196 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000530-241125135418005/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m5vkca
title: Occurrence Download

description: A dataset containing 2021039 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "PublishingCountry is Japan"
 ]
}

 The dataset includes 2021039 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0020258-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktc7p5
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "GadmGid is DEU.3_1",
 "OccurrenceStatus is Present",
 "TaxonKey is Caloplaca decipiens (Arnold) Blomb. & Forssell"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010390-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132397.20240916.9.1
title: Paenibacillus etheri Guisado et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.5281/zenodo.15118680
title: Extended Lombardy's Neonatal Screening Dataset

description: The Neonatal Screening dataset comprises de-identified medical records collected from routine newborn screening programs. It includes data from [insert number] neonates screened within 2012-2021, across more than 100 hospitals. The dataset captures early-life biological and demographic information, including gestational age, birth weight, sex, and time of sample collection, as well as biochemical markers obtained from dried blood spot samples typically collected within 24–72 hours after birth.

The dataset also contains confirmatory diagnostic information for screen-positive cases, allowing for the evaluation of screening accuracy and follow-up outcomes.

This dataset supports epidemiological analysis, algorithm development for early disease detection, and assessments of screening program performance.
DOI: 10.13145/bacdive132398.20241212.9.2
title: Kibdelosporangium banguiense Pascual et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132399.20241212.9.2
title: Kroppenstedtia sanguinis Bell et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132400.20241212.9.2
title: Kroppenstedtia pulmonis Bell et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132402.20241212.9.2
title: Testudinibacter aquarius Hansen et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132403.20241212.9.2
title: Shimia abyssi (Nogi et al. 2016) Wirth and Whitman 2018

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132404.20241212.9.2
title: Enterobacter bugandensis Doijad et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132405.20241212.9.2
title: Enterobacter bugandensis Doijad et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132409.20241212.9.2
title: Enterobacter bugandensis Doijad et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132411.20241212.9.2
title: Enterobacter bugandensis Doijad et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.kxgp5j
title: Occurrence Download

description: A dataset containing 9481522 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Netherlands",
 "OccurrenceStatus is Present",
 "Year is one of (2015, 2017)"
 ]
}

 The dataset includes 9481522 records from 147 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010284-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132414.20240916.9.1
title: Inmirania thermothiophila Slobodkina et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132416.20241212.9.2
title: Athalassotoga saccharophila Itoh et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.15468/dl.cdgfdn
title: Occurrence Download

description: A dataset containing 85 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "TaxonKey is Mentha spicata L."
 ]
}

 The dataset includes 85 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010389-250402121839773/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.13145/bacdive132417.20240916.9.1
title: Paludisphaera borealis Kulichevskaya et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132419.20240916.9.1
title: Mongoliibacter ruber Wang et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132424.20241212.9.2
title: Faecalibaculum rodentium Chang et al. 2016 emend. Cox et al. 2017

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132425.20241212.9.2
title: Proteus terrae subsp. terrae (Behrendt et al. 2016) Behrendt et al. 2021

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132426.20241212.9.2
title: Croceibacterium mercuriale (Coil et al. 2016) Liu et al. 2019

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132427.20241212.9.2
title: Lentzea guizhouensis Cao et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132428.20241212.9.2
title: Thermogladius calderae Kochetkova et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132429.20241212.9.2
title: Methanosarcina flavescens Kern et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132430.20241212.9.2
title: Phycicoccus endophyticus Liu et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132432.20241212.9.2
title: Streptomyces yangpuensis Tang et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.13145/bacdive132433.20240916.9.1
title: Pseudoclavibacter endophyticus Li et al. 2016

description: The range of data encompasses taxonomy, morphology, physiology, sampling and concomitant environmental conditions as well as molecular biology.
DOI: 10.25549/independent-c69-42814
title: Claims (GX 10850 - GX 11351), 1986

description: Collection of claims filed against the LAPD with regards ranging from wrongful death to violation of civil rights, etc., 1986. PART OF A SERIES: The series includes materials related to the work product of Price Waterhouse, whose staff investigated citizen complaints and civil litigation claims involving the LAPD. Included are claims reports, claims analyses, card files, and arbitration reports; summaries of 83 selected civil litigation cases; materials from the personnel files of LAPD officers named in these cases, as well as documents listing their subsequent penalties; and statistics that break complaints down according to a variety of criteria, including race, gender, and police division.