cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/wyv-xwz-3gn
title: †Tetrataxis Ehrenberg, 1854

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ydk-35e-r8e
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7zp-h6z-fel
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/ypj-mha-s9r
title: Foraminifera d'Orbigny, 1826

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/meb-44b-6jr
title: Podocopida Sars, 1866

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/nce-svg-sv4
title: Alveolinella H. Douvillé, 1907

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/7rg-l9l-g2r
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.3535/plv-2me-525
title: Animalia

description: Digital Specimen for the physical specimen hosted at Naturalis Biodiversity Center.
DOI: 10.15468/dl.ufpvu2
title: Occurrence Download

description: A dataset containing 1598 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hampea trilobata Standl.",
 "BasisOfRecord is one of (Specimen, Fossil, Material sample, Material citation)"
 ]
}

 The dataset includes 1598 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010676-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jpsdkg
title: Occurrence Download

description: A dataset containing 14847 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is RBR herbarium - Universidade Federal Rural do Rio de Janeiro - Herbário Virtual REFLORA"
 ]
}

 The dataset includes 14847 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001894-250515123054153/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nabvzt
title: Occurrence Download

description: A dataset containing 9959 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Machilus thunbergii Siebold & Zucc., Machilus thunbergii Hemsl., Machilus thunbergii var. condorensis Lecomte, Machilus thunbergii f. stenophyllus (Koidz.) Sugim., Machilus thunbergii var. stenophyllv Koidz., Machilus thunbergii var. kwashotensis (Hayata) Yamam., Machilus thunbergii subsp. trochodendroides Masam., Machilus thunbergii var. trochodendroides Masam., Machilus thunbergii var. japonica (Siebold & Zucc.) Yatabe, Machilus thunbergii var. obovata Nakai, Machilus thunbergii subsp. kwashotensis (Hayata) Yamamoto)"
 ]
}

 The dataset includes 9959 records from 158 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077907-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bzn4hg
title: Occurrence Download

description: A dataset containing 397 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Magnolia cylindrica E.H.Wilson, Magnolia cylindrica var. purpurascens Y.L.Wang & S.Z.Zhang)"
 ]
}

 The dataset includes 397 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077911-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.syezr6
title: Occurrence Download

description: A dataset containing 89420 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is one of (Ireland, Svalbard and Jan Mayen, Norway, Sweden, Finland, Estonia, Latvia, Denmark, Portugal, Spain, France, Germany, Netherlands, Switzerland, Austria, Italy, Greece, Türkiye, Russian Federation, Belarus, Ukraine, Poland, Czechia, Slovakia, Hungary, Romania, Bulgaria, Albania, Serbia, Slovenia, Bosnia and Herzegovina)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Thalictrum flavum L."
 ]
}

 The dataset includes 89420 records from 575 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0077865-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7ctfn8
title: Occurrence Download

description: A dataset containing 705566 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alnus glutinosa (L.) Gaertn."
 ]
}

 The dataset includes 705566 records from 1908 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0125184-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/jky1-e269
title: Richmond diatom dataset

description: Raw data for the Richmond diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/50kx-fw73
title: Millwood Lake water chemistry dataset

description: Raw data for the Millwood Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/m1x2-0c48
title: Haleakalā Volcano 5I pollen surface sample dataset

description: Raw data for the Haleakalā Volcano 5I pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6gfd-r611
title: Okanagan Lake ostracode surface sample dataset

description: Raw data for the Okanagan Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/29rg-bf73
title: South Rhody peatland testate amoebae surface sample dataset

description: Raw data for the South Rhody peatland testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/xfcp-eh56
title: Süfternen-Grönegg pollen dataset

description: Raw data for the Süfternen-Grönegg pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15334566
title: ROSE: A Transformer-based Recommender for Refactoring Operations from Architectural Smell

description: This dataset accompanies the study ROSE: A Transformer-based Recommender for Refactoring Operations from Architectural Smells. It contains the full replication package for training and evaluating transformer models (CodeBERT and CodeT5) on the task of recommending refactorings to remove architectural smells.

The dataset is class-balanced, ensuring equal representation of the three architectural smells and their associated refactorings. The balancing was achieved through random undersampling of over-represented classes, ensuring fair evaluation and comparability across models.

The corpus includes:





Labeled code snippets (Java) with associated refactoring types




Refactoring labels mapped to architectural smells:





God Class → Extract Method




Cyclic Dependency → Move Class




Hub-like Dependency → Pull Up Method
DOI: 10.5281/zenodo.15334567
title: ROSE: A Transformer-based Recommender for Refactoring Operations from Architectural Smell

description: This dataset accompanies the study ROSE: A Transformer-based Recommender for Refactoring Operations from Architectural Smells. It contains the full replication package for training and evaluating transformer models (CodeBERT and CodeT5) on the task of recommending refactorings to remove architectural smells.

The dataset is class-balanced, ensuring equal representation of the three architectural smells and their associated refactorings. The balancing was achieved through random undersampling of over-represented classes, ensuring fair evaluation and comparability across models.

The corpus includes:





Labeled code snippets (Java) with associated refactoring types




Refactoring labels mapped to architectural smells:





God Class → Extract Method




Cyclic Dependency → Move Class




Hub-like Dependency → Pull Up Method
DOI: 10.21233/zv45-r877
title: ABD247 pollen surface sample dataset

description: Raw data for the ABD247 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/8n11-pf25
title: Biesterfeldt macroinvertebrate dataset

description: Raw data for the Biesterfeldt macroinvertebrate dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/d18b-af34
title: LDDsite4265 water chemistry dataset

description: Raw data for the LDDsite4265 water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/zawe-t053
title: Tres Casas [LA 5843] vertebrate fauna dataset

description: Raw data for the Tres Casas [LA 5843] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.5281/zenodo.15383249
title: euphorbia_stygiana_decontaminated_FSCR.fasta.gz
DOI: 10.5281/zenodo.15383250
title: euphorbia_stygiana_decontaminated_FSCR.fasta.gz
DOI: 10.21233/mtxz-vr32
title: LDDsite6098 ostracode surface sample dataset

description: Raw data for the LDDsite6098 ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/k8we-gm44
title: Lefferts Lake water chemistry dataset

description: Raw data for the Lefferts Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/dp17-8f21
title: Sinnock [EcKx-4] vertebrate fauna dataset

description: Raw data for the Sinnock [EcKx-4] vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/40xc-sc24
title: Long Pond water chemistry dataset

description: Raw data for the Long Pond water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6s13-w929
title: Lake Nokoué pollen dataset

description: Raw data for the Lake Nokoué pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/5axv-kt88
title: Valle Pequeño charcoal dataset

description: Raw data for the Valle Pequeño charcoal dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/c627-v227
title: Marion Lake diatom surface sample dataset

description: Raw data for the Marion Lake diatom surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/teyh-wa30
title: Meadow Lake ostracode surface sample dataset

description: Raw data for the Meadow Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/yzzz-aa38
title: Mitkof Island pollen dataset

description: Raw data for the Mitkof Island pollen dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/e29p-s585
title: Lenora Lake ostracode surface sample dataset

description: Raw data for the Lenora Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jcda-vw82
title: Cheng et al. 2020 Site 151 pollen surface sample dataset

description: Raw data for the Cheng et al. 2020 Site 151 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/amtb-ba80
title: Halfway Pond water chemistry dataset

description: Raw data for the Halfway Pond water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/edzh-ke09
title: Catchacoma Lake ostracode surface sample dataset

description: Raw data for the Catchacoma Lake ostracode surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.15468/dl.vuj7cg
title: Occurrence Download

description: A dataset containing 1658 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lophomyrtus bullata (Sol. ex A.Cunn.) Burret"
 ]
}

 The dataset includes 1658 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025190-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21233/ebg2-zh19
title: Cone P. diatom dataset

description: Raw data for the Cone P. diatom dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/6vfm-es67
title: King & Kapp 1963 Site 2 pollen surface sample dataset

description: Raw data for the King & Kapp 1963 Site 2 pollen surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/ed3k-am86
title: Long L. (C.L.) water chemistry dataset

description: Raw data for the Long L. (C.L.) water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/h2zg-7c90
title: East Lake water chemistry dataset

description: Raw data for the East Lake water chemistry dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/jxgj-s179
title: Rappuhn Site vertebrate fauna dataset

description: Raw data for the Rappuhn Site vertebrate fauna dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.21233/1b39-2c31
title: Trout Peatland E testate amoebae surface sample dataset

description: Raw data for the Trout Peatland E testate amoebae surface sample dataset submitted to the Neotoma Paleoecology Database. Data is available through the landing page in JSON format. The landing page referenced by the DOI also contains links to publications and a map-based viewer for the dataset. The Neotoma Paleoecology Database maintains a homepage at https://www.neotomadb.org.
DOI: 10.6084/m9.figshare.29026130
title: Genome annotation of the Indo-Pacific humpback dolphin.

description: This container includes five annotation files as follows: (1) Gene structure annotation; (2) Repeat sequence annotation generated by the RepeatMasker software; (3) Repeat sequence annotation generated by the RepeatModeler software; (4) Repeat sequence annotation generated by the RepeatProteinMask software; (5) Tandem repeat sequence annotation generated by the TRF software.
DOI: 10.5281/zenodo.14918722
title: SynthRAD2025 Grand Challenge dataset: Testing

description: Test dataset for the SynthRAD2025 challenge

A detailed description of the SynhtRAD2025 challenge dataset is available here: 10.5281/zenodo.14918089 Each patient folder in the test dataset contains:



ct.mha: preprocessed CT image

mr.mha or cbct.mha (depending on the task): preprocessed MR or CBCT image

mask.mha: Binary mask of the patient outline (dilated)

ct_def.mha : deformed CT image, used for metric calculation 


An overview folder within each anatomical region subfolder contains:



[task]_[anatomy]_parameters.xlsx: Imaging protocol details for each patient.

[task][anatomy][center][PatientID]_overview.png: A visualization of axial, coronal, and sagittal slices of CBCT/MR, CT, mask, and difference images.
description: Update 11.05.2025 (v2):

All CT and CBCT datasets are now properly clipped (-1024,3071).
DOI: 10.5281/zenodo.14918723
title: SynthRAD2025 Grand Challenge dataset: Testing

description: Test dataset for the SynthRAD2025 challenge

A detailed description of the SynhtRAD2025 challenge dataset is available here: 10.5281/zenodo.14918089 Each patient folder in the test dataset contains:



ct.mha: preprocessed CT image

mr.mha or cbct.mha (depending on the task): preprocessed MR or CBCT image

mask.mha: Binary mask of the patient outline (dilated)

ct_def.mha : deformed CT image, used for metric calculation 


An overview folder within each anatomical region subfolder contains:



[task]_[anatomy]_parameters.xlsx: Imaging protocol details for each patient.

[task][anatomy][center][PatientID]_overview.png: A visualization of axial, coronal, and sagittal slices of CBCT/MR, CT, mask, and difference images.
DOI: 10.5281/zenodo.15373084
title: SynthRAD2025 Grand Challenge dataset: Testing

description: Test dataset for the SynthRAD2025 challenge

A detailed description of the SynhtRAD2025 challenge dataset is available here: 10.5281/zenodo.14918089 Each patient folder in the test dataset contains:



ct.mha: preprocessed CT image

mr.mha or cbct.mha (depending on the task): preprocessed MR or CBCT image

mask.mha: Binary mask of the patient outline (dilated)

ct_def.mha : deformed CT image, used for metric calculation 


An overview folder within each anatomical region subfolder contains:



[task]_[anatomy]_parameters.xlsx: Imaging protocol details for each patient.

[task][anatomy][center][PatientID]_overview.png: A visualization of axial, coronal, and sagittal slices of CBCT/MR, CT, mask, and difference images.
description: Update 11.05.2025 (v2):

All CT and CBCT datasets are now properly clipped (-1024,3071).