cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.7849997.v1
title: Additional file 6: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes upregulated in males or females at E11 and E12 genital ridges (B, E, H, K), upregulated in E11 or E12 in male or female genital ridges (A, D, G, J), and specific genes for E11 and E12 male or female genital ridges (C, F, I, L). (XLS 2301 kb)
DOI: 10.6084/m9.figshare.7850003.v1
title: Additional file 8: of Differential isoform expression and alternative splicing in sex determination in mice

description: Chromosome distribution profile for clusters of differentially expressed genes and comparison with homologous synteny blocks (HSBs). Distribution of clusters identified with Cluster Locator [15] upregulated in the gonads of E11 females (A), E12 females (B) E11 males (C) and E12 males (D). Only clusters &gt; 5 genes are represented in the figures. Genes also present in HSBs are highlighted inside a black box. (XLSX 588 kb)
DOI: 10.6084/m9.figshare.7849985
title: Additional file 4: of Differential isoform expression and alternative splicing in sex determination in mice

description: Gene Ontology analysis of the top 20 significantly enriched biological functions of genes upregulated in the genital ridges of E11 males (A) and females (B) and E12 males (C) and females (D). (XLSX 334 kb)
DOI: 10.6084/m9.figshare.7849979
title: Additional file 3: of Differential isoform expression and alternative splicing in sex determination in mice

description: Differentially expressed genes in males vs females at E11 (A), E12 (B) and at E11 vs E12 in males (C) and females (D). Sex biased genes are represented in (E). (XLSX 3483 kb)
DOI: 10.6084/m9.figshare.7849985.v1
title: Additional file 4: of Differential isoform expression and alternative splicing in sex determination in mice

description: Gene Ontology analysis of the top 20 significantly enriched biological functions of genes upregulated in the genital ridges of E11 males (A) and females (B) and E12 males (C) and females (D). (XLSX 334 kb)
DOI: 10.6084/m9.figshare.7850000.v1
title: Additional file 7: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes (A) and isoforms (B) showing male- or female biased expression. (XLSX 481 kb)
DOI: 10.6084/m9.figshare.7849976
title: Additional file 2: of Differential isoform expression and alternative splicing in sex determination in mice

description: Quantification and differential expression analysis at the gene and isoform level. Normalized FPKM of the expression values are provided in Tab (A) for each gene and Tab (C) for each isoform with detectable expression (expected counts &gt; 0) along with GRCm38.p6 annotations. A graphing tool for easy visualization of gene expression (Tab. B) or isoform (Tab. D) in E11 and E12 XX and XY fetal gonads. To generate an expression graph for any chosen gene, the gene symbol is typed or pasted into cell A2 of Tab (B) or the transcript ID into cell A2 of Tab (D). (XLSX 27004 kb)
DOI: 10.6084/m9.figshare.7849979.v1
title: Additional file 3: of Differential isoform expression and alternative splicing in sex determination in mice

description: Differentially expressed genes in males vs females at E11 (A), E12 (B) and at E11 vs E12 in males (C) and females (D). Sex biased genes are represented in (E). (XLSX 3483 kb)
DOI: 10.6084/m9.figshare.7849967
title: Additional file 24: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of events common to DEGs and DEIs in male and female E11 and E12 genital ridges. (XLSX 390 kb)
DOI: 10.6084/m9.figshare.7849970
title: Additional file 25: of Differential isoform expression and alternative splicing in sex determination in mice

description: Sequences of the primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7849976.v1
title: Additional file 2: of Differential isoform expression and alternative splicing in sex determination in mice

description: Quantification and differential expression analysis at the gene and isoform level. Normalized FPKM of the expression values are provided in Tab (A) for each gene and Tab (C) for each isoform with detectable expression (expected counts &gt; 0) along with GRCm38.p6 annotations. A graphing tool for easy visualization of gene expression (Tab. B) or isoform (Tab. D) in E11 and E12 XX and XY fetal gonads. To generate an expression graph for any chosen gene, the gene symbol is typed or pasted into cell A2 of Tab (B) or the transcript ID into cell A2 of Tab (D). (XLSX 27004 kb)
DOI: 10.6084/m9.figshare.7849961
title: Additional file 23: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of events common to DEIs and AS in male and female E11 and E12 genital ridges. (XLSX 1078 kb)
DOI: 10.6084/m9.figshare.7849967.v1
title: Additional file 24: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of events common to DEGs and DEIs in male and female E11 and E12 genital ridges. (XLSX 390 kb)
DOI: 10.6084/m9.figshare.7849970.v1
title: Additional file 25: of Differential isoform expression and alternative splicing in sex determination in mice

description: Sequences of the primers used in this study. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.7849955
title: Additional file 22: of Differential isoform expression and alternative splicing in sex determination in mice

description: Comparison of DEIs with the data of Zhao et al. and Jameson et al. (A) List of DEIs found in our study. (B) List of DEIs found by Zhao et al. Common differentially expressed isoforms in E11 vs E12 males to those detected by Zhao et al. (C) and by Jameson et al. (E). Common differentially expressed isoforms in E11 vs E12 females to those detected by Zhao et al. (D) and by Jameson et al. (F). (XLSX 342 kb)
DOI: 10.6084/m9.figshare.7849961.v1
title: Additional file 23: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of events common to DEIs and AS in male and female E11 and E12 genital ridges. (XLSX 1078 kb)
DOI: 10.6084/m9.figshare.7849955.v1
title: Additional file 22: of Differential isoform expression and alternative splicing in sex determination in mice

description: Comparison of DEIs with the data of Zhao et al. and Jameson et al. (A) List of DEIs found in our study. (B) List of DEIs found by Zhao et al. Common differentially expressed isoforms in E11 vs E12 males to those detected by Zhao et al. (C) and by Jameson et al. (E). Common differentially expressed isoforms in E11 vs E12 females to those detected by Zhao et al. (D) and by Jameson et al. (F). (XLSX 342 kb)
DOI: 10.6084/m9.figshare.7849934
title: Additional file 18: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes showing different alternative splicing (AS) events in males vs females at E11 (A) and E12 (B). (C) Search tool for genes showing different AS events in males vs females at E11 and E12. (D) Functional annotation analysis (DAVID) of genes showing different AS events in males vs female at E11 and E12. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.7849937
title: Additional file 19: of Differential isoform expression and alternative splicing in sex determination in mice

description: Comparison of DEGs with the data of Zhao et al. (A) List of DEGs found in our study. (B) List of DEGs found by Zhao et al. (C) Common differentially expressed genes in E11 vs E12 males. (D) Common differentially expressed genes in E11 vs E12 females. (XLSX 388 kb)
DOI: 10.6084/m9.figshare.7849928
title: Additional file 17: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E12 female genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 371 kb)
DOI: 10.6084/m9.figshare.7849937.v1
title: Additional file 19: of Differential isoform expression and alternative splicing in sex determination in mice

description: Comparison of DEGs with the data of Zhao et al. (A) List of DEGs found in our study. (B) List of DEGs found by Zhao et al. (C) Common differentially expressed genes in E11 vs E12 males. (D) Common differentially expressed genes in E11 vs E12 females. (XLSX 388 kb)
DOI: 10.6084/m9.figshare.7849925
title: Additional file 16: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E11 female genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 478 kb)
DOI: 10.6084/m9.figshare.7849928.v1
title: Additional file 17: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E12 female genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 371 kb)
DOI: 10.6084/m9.figshare.7849934.v1
title: Additional file 18: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of genes showing different alternative splicing (AS) events in males vs females at E11 (A) and E12 (B). (C) Search tool for genes showing different AS events in males vs females at E11 and E12. (D) Functional annotation analysis (DAVID) of genes showing different AS events in males vs female at E11 and E12. (XLSX 77 kb)
DOI: 10.6084/m9.figshare.7849916
title: Additional file 14: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E11 male genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.7849919
title: Additional file 15: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E12 male genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 252 kb)
DOI: 10.6084/m9.figshare.7849925.v1
title: Additional file 16: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E11 female genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 478 kb)
DOI: 10.6084/m9.figshare.7849907
title: Additional file 13: of Differential isoform expression and alternative splicing in sex determination in mice

description: (A) List of up- or down regulated genes in male and female genital ridges during the time course E11 to E12. (B) List of up- or down regulated isoforms in male and female genital ridges during the time course E11 to E12. (XLSX 429 kb)
DOI: 10.6084/m9.figshare.7849916.v1
title: Additional file 14: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E11 male genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 149 kb)
DOI: 10.6084/m9.figshare.7849919.v1
title: Additional file 15: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of upregulated alternative splicing (AS) events in E12 male genital ridges. AS categories: 3SS, alternative 3′ splice sites; A5SS, alternative 5′ splice sites; ES, exon skipping; IR, retained introns; U2&U12inU2, U2 IR plus U2 intron in U12-containing genes. (XLSX 252 kb)
DOI: 10.6084/m9.figshare.7849907.v1
title: Additional file 13: of Differential isoform expression and alternative splicing in sex determination in mice

description: (A) List of up- or down regulated genes in male and female genital ridges during the time course E11 to E12. (B) List of up- or down regulated isoforms in male and female genital ridges during the time course E11 to E12. (XLSX 429 kb)
DOI: 10.6084/m9.figshare.7849895
title: Additional file 11: of Differential isoform expression and alternative splicing in sex determination in mice

description: Gene Ontology analysis of the top 20 significantly enriched biological functions of isoforms upregulated in the genital ridges of E11 males (A) and females (B) and E12 males (C) and females (D). (XLSX 316 kb)
DOI: 10.6084/m9.figshare.7849901
title: Additional file 12: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of isoforms upregulated in males or females at E11 and E12 genital ridges (B, E, H, K), upregulated in E11 or E12 in male or female genital ridges (A, D, G, J), and specific isoforms for E11 and E12 male or female genital ridges (C, F, I, L). (XLSX 1224 kb)
DOI: 10.6084/m9.figshare.7849901.v1
title: Additional file 12: of Differential isoform expression and alternative splicing in sex determination in mice

description: List of isoforms upregulated in males or females at E11 and E12 genital ridges (B, E, H, K), upregulated in E11 or E12 in male or female genital ridges (A, D, G, J), and specific isoforms for E11 and E12 male or female genital ridges (C, F, I, L). (XLSX 1224 kb)
DOI: 10.6084/m9.figshare.7849886
title: Additional file 10: of Differential isoform expression and alternative splicing in sex determination in mice

description: Relative contributions of transcriptional activation and repression to sexually dimorphic DEGs and DEIs for E11 vs E12. Venn diagrams comparing genes manifesting biased expression in one sex, those upregulated in the relevant sex, and those downregulated in the opposite sex. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.7849895.v1
title: Additional file 11: of Differential isoform expression and alternative splicing in sex determination in mice

description: Gene Ontology analysis of the top 20 significantly enriched biological functions of isoforms upregulated in the genital ridges of E11 males (A) and females (B) and E12 males (C) and females (D). (XLSX 316 kb)
DOI: 10.6084/m9.figshare.7849877
title: MOESM1 of The interaction between permethrin exposure and malaria infection affects the host-seeking behaviour of mosquitoes

description: Additional file 1: Table S1. Dataset Irritancy. Data used for statistical analysis of irritancy. Table S2. Dataset Motivation to bite. Data used for statistical analysis of the motivation of mosquitoes to bite after permethrin exposure (interval count analysis).
DOI: 10.6084/m9.figshare.7849886.v1
title: Additional file 10: of Differential isoform expression and alternative splicing in sex determination in mice

description: Relative contributions of transcriptional activation and repression to sexually dimorphic DEGs and DEIs for E11 vs E12. Venn diagrams comparing genes manifesting biased expression in one sex, those upregulated in the relevant sex, and those downregulated in the opposite sex. (XLSX 123 kb)
DOI: 10.6084/m9.figshare.7849877.v1
title: MOESM1 of The interaction between permethrin exposure and malaria infection affects the host-seeking behaviour of mosquitoes

description: Additional file 1: Table S1. Dataset Irritancy. Data used for statistical analysis of irritancy. Table S2. Dataset Motivation to bite. Data used for statistical analysis of the motivation of mosquitoes to bite after permethrin exposure (interval count analysis).
DOI: 10.6084/m9.figshare.7849871
title: Additional file 1: of Quid pro quo? The benefit of reciprocity, multiplexity, and multireciprocity in early career peer support

description: R syntax and fictitious data set for illustration. (ZIP 3 kb)
DOI: 10.6084/m9.figshare.7849871.v1
title: Additional file 1: of Quid pro quo? The benefit of reciprocity, multiplexity, and multireciprocity in early career peer support

description: R syntax and fictitious data set for illustration. (ZIP 3 kb)
DOI: 10.6084/m9.figshare.7849835
title: Additional file 4: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: r Table S4. Significantly differentially expressed genes without somatic mutations. (XLSX 272 kb)
DOI: 10.6084/m9.figshare.7849844
title: Additional file 5: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S5. Comprehensive list of genes containing both germline and somatic mutation, chromosome position, SNP-ID (rs-ID), both germline and somatic mutation frequencies, GWAS and expression p-values and FDR. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7849844.v1
title: Additional file 5: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S5. Comprehensive list of genes containing both germline and somatic mutation, chromosome position, SNP-ID (rs-ID), both germline and somatic mutation frequencies, GWAS and expression p-values and FDR. (XLSX 22 kb)
DOI: 10.6084/m9.figshare.7849826
title: Additional file 3: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S3. Comprehensive list of somatically mutated and significantly differentially expressed genes with gene symbols, p-value and adjusted p-value from supervised analysis and frequency distribution of somatic mutations per gene. (XLSX 367 kb)
DOI: 10.6084/m9.figshare.7849835.v1
title: Additional file 4: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: r Table S4. Significantly differentially expressed genes without somatic mutations. (XLSX 272 kb)
DOI: 10.6084/m9.figshare.7849820
title: Additional file 2: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S2. Comprehensive list of somatic mutations, gene symbols, Ensemble gene IDs, chromosome number and type of mutation derived from the TCGA data and used in this study. (XLSX 1387 kb)
DOI: 10.6084/m9.figshare.7849814
title: Additional file 1: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S1. Comprehensive list of single nucleotide polymorphisms (herein called genetic variants) and genes associated with an increased risk of developing prostate cancer including published GWAS reports denoted by the PubMed ID and actual reference from which the data was extracted. (XLSX 81 kb)
DOI: 10.6084/m9.figshare.7849820.v1
title: Additional file 2: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S2. Comprehensive list of somatic mutations, gene symbols, Ensemble gene IDs, chromosome number and type of mutation derived from the TCGA data and used in this study. (XLSX 1387 kb)
DOI: 10.6084/m9.figshare.7849826.v1
title: Additional file 3: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S3. Comprehensive list of somatically mutated and significantly differentially expressed genes with gene symbols, p-value and adjusted p-value from supervised analysis and frequency distribution of somatic mutations per gene. (XLSX 367 kb)
DOI: 10.6084/m9.figshare.7849814.v1
title: Additional file 1: of Integrating germline and somatic variation information using genomic data for the discovery of biomarkers in prostate cancer

description: Table S1. Comprehensive list of single nucleotide polymorphisms (herein called genetic variants) and genes associated with an increased risk of developing prostate cancer including published GWAS reports denoted by the PubMed ID and actual reference from which the data was extracted. (XLSX 81 kb)
DOI: 10.5281/zenodo.4004525
title: ATTA-Ar calibration data

description: ATTA-Ar Calibration data for GRL submission.
DOI: 10.5281/zenodo.4004524
title: ATTA-Ar calibration data

description: ATTA-Ar Calibration data for GRL submission.
DOI: 10.6084/m9.figshare.7849463
title: Leptospirosis Malaria Data.xlsx

description: Leptospirosis and Malaria Co-Infections
DOI: 10.23641/asha.7849394
title: CI users’ encoding, storage, and retrieval (AuBuchon et al., 2019)

description: <b>Purpose: </b>The current study adopts a systematic approach to the examination of working memory components in pediatric cochlear implant (CI) users by separately assessing contributions of encoding, storage, and retrieval.<b>Method: </b>Forty-nine long-term CI users and 56 typically hearing controls completed forward and backward span tasks with 3 stimulus sets: visually presented digits, pictures of concrete nouns, and novel symbols. In addition, measures associated with each memory stage were collected: Rapid digit naming provided an estimate of phonological recoding speed, nonword repetition assessed the robustness of representations within phonological storage, and vocabulary knowledge (as measured by the Peabody Picture Vocabulary Test; Dunn & Dunn, 1997) estimated redintegration abilities during retrieval. <b>Results: </b>Linear mixed modeling revealed that digit naming speed and vocabulary knowledge were consistently related to short-term and working memory span in both CI users and typically hearing controls. However, nonword repetition only contributed to the model for short-term memory.<b>Conclusions: </b>Nonword repetition, an index of phonological storage, explained little of the individual variability in working memory differences between CI users and typically hearing peers. On the other hand, individual differences in encoding and retrieval explained a significant amount of outcome variability in both short-term and working memory tasks. Differences between CI users and typically hearing peers in working memory therefore appear to reflect process components of encoding and retrieval and not simply differences in memory storage.<br><b>Supplemental Material S1.</b> Pairwise correlations for the six span tasks and tasks estimating encoding (rapid digit naming), storage (nonword repetition), and retrieval/redintegration (PPVT).<br><b>Supplemental Material S2. </b>Linear mixed models with hearing status in place of nonword repetition for forward span.<br><b>Supplemental Material S3.</b> Linear mixed models with hearing history. <br>AuBuchon, A. M., Pisoni, D. B., Kronenberger, W. G. (2019). Evaluating pediatric cochlear implant users' encoding, storage, and retrieval strategies in verbal working memory. <i>Journal of Speech, Language, and Hearing Research, 62, </i>1016–1032. https://doi.org/10.1044/2018_JSLHR-H-18-0201
DOI: 10.6084/m9.figshare.7849388
title: abc.tar

description: A small .tar file to use for testing downloads and extractions from figshare. <br>
DOI: 10.6084/m9.figshare.7849391
title: abc.tar.gz

description: This is a small .tar.gz file for testing downloads and extractions from figshare.<br>