cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.18743/data.00190
title: SDS PAGE showing chaperone binding to alpha-synuclein amyloid fibres for different conditions (+/- Apg2, WT or truncated mutant of DNAJB1, different dilutions of Apg2).

description: The dataset contains 1 file explaining the different conditions and 11 pictures of SDS PAGE showing the binding of various chaperones to alpha-synuclein fibres.
description: Three independent repeats were performed for each condition. All chaperone aliquots (Hsc70, DNAJB1, Apg2) were centrifuged at 17,000 g for 30 minutes at 4°C. αSyn amyloid fibres were sonicated for 15 minutes at high frequency using a CPX 2800 Bransonic Ultrasonic bath (Branson). αSyn amyloid fibres (40 µM, monomer concentration) were incubated with Hsc70 (8 µM), DNAJB1 or ΔJ-DNAJB1 (4 µM), and Apg2 (different concentrations as indicated) in the disaggregation buffer for 1 hour at 30°C. The samples were then centrifuged for 45 minutes at 17,000 g to separate the pellet, containing the fibres and bound chaperones, from the supernatant with unbound chaperones. The supernatant was then collected and both fractions were incubated in 4X NuPAGE LDS Sample buffer (Thermo Fisher Scientific) for at least 30 minutes at 90°C. Samples were then loaded on BOLT 4-12% Bis-Tris gels (Thermo Fisher Scientific) and analysed by SDS-PAGE.
DOI: 10.18743/data.00191
title: EM images of alpha-synuclein amyloid fibres incubated with chaperones

description: The dataset contains a file describing the images and 5 EM images acquired on a F20 microscope.
description: Three independent repeats were performed for each condition. Cryo-EM sample preparation: alpha-synuclein (αSyn) amyloid fibres were sonicated for 30 minutes using a Branson 1800 ultrasonic cleaner to produce dispersed fragments of αSyn fibres. The suspension was diluted to 6 µM αSyn monomer concentration and mixed, when indicated, with 6 µM Hsc70, 3 µM DNAJB1 and 0.6 µM Apg2, and incubated for 1 hour at 30°C in disaggregation buffer (or HKMD buffer for the control without chaperones). 4 µL of this preparation were applied to negatively glow discharged holey carbon C-flat grids (CF-1.2/1.3-4C) (Protochips, USA), back blotted and plunge frozen in liquid ethane using a Leica EM GP2 (Leica Microsystems, Germany). Negative stain sample preparation: αSyn fibres (10 µM monomer) were mixed, when indicated, with Hsc70 (10 µM), Apg2 (1 µM), and WT or ΔJ-DNAJB1(5 µM monomer) for 1 hour at 30°C in the disaggregation buffer (or HKMD buffer for the control without chaperones). These samples were applied to glow discharged continuous carbon film-coated, 300 mesh copper grids (EMS) and blotted after 1 minute. The grid was then stained with 2% (w/v) uranyl formate and immediately blotted 3 times. Images were acquired using a Tecnai TF20 electron microscope (Thermo Fisher, USA) equipped with FEG source operating at 200 keV. Images were recorded with a DE-20 direct electron detector (Direct Electron, USA) at a magnification corresponding to 1.83 Å/pixel using a total dose of ~30 e-/Å².
DOI: 10.15468/9ku7uu
title: Cap'n Fish's Cruises sightings

description: Original provider: Cap'n Fish's Cruises Dataset credits: Dominique Caverly, Cap'n Fish's Cruises Abstract: Data was collected during 3-5 hour public whale watching trips conducted out of Boothbay Harbor, Maine by Cap'n Fish's Cruises. Data is hand collected by on board naturalist. Purpose: N/A Supplemental information: Sighting times were not recorded. Several records do not have coordinates.
DOI: 10.6084/m9.figshare.19536754
title: Dataset.zip

description: Text and audio data from the CMU-MOSI dataset
DOI: 10.5281/zenodo.6421430
title: Hassar affinis decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421429
title: Hassar affinis decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421445
title: Henicopernis longicauda decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421444
title: Henicopernis longicauda decontaminated FSCR

description: .
DOI: 10.34740/kaggle/dsv/3422112
title: 2021 World Population (updated daily)
DOI: 10.5517/ccdc.csd.cc2bgbw1
title: CCDC 2158743: Experimental Crystal Structure Determination

description: Related Article: Kerstin Kunz, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.5517/ccdc.csd.cc2bgmhy
title: CCDC 2159010: Experimental Crystal Structure Determination

description: Related Article: Daniel Franz, Michael Bolte, Matthias Wagner|2022|CSD Communication|||
DOI: 10.23728/b2share.9d3a0f62b730414597c27f51d833e3c9
title: Participant dataset submitted by OrthoFinder_MSA_v2.5.2

description: Participant dataset submitted by participant OrthoFinder_MSA_v2.5.2 for 'Quest for Orthologs - 2020 Reference Proteomes' benchmarking event.
DOI: 10.34740/kaggle/dsv/3422147
title: COVID Vaccination in World (updated daily)
DOI: 10.6084/m9.figshare.14006200.v1
title: Real-life association between inhaler technique, patient preference and asthma control in patients with uncontrolled asthma switched to budesonide/formoterol DuoResp® Spiromax® combination

description: <b>Objective:</b> In asthma, treatment effectiveness is strongly influenced by the quality of inhaler use. New devices such as Spiromax® have been specifically developed to improve ease of use. It is crucial to determine whether switching to such a device improves inhaler technique and clinical outcomes, and to identify factors associated with handling errors. <b>Methods:</b> This observational study assessed inhaler device handling errors in 1435 asthma patients recruited via 135 participating physicians in France, before and after switching therapy from the Symbicort Turbuhaler® or Seretide® Diskus® to DuoResp® Spiromax®. Patients received training in the use of their new device at baseline and were re-assessed after three months. <b>Results:</b> After three months of use, 67% of patients were using the DuoResp® Spiromax® with no handling errors, and 88% with no critical errors. The presence of comorbidities was associated with handling errors overall. Concurrent illness potentially affecting device handling and previous training were associated with critical device handling errors. Most patients (85.4%) preferred DuoResp® Spiromax® over their previous device. Levels of inadequately controlled or uncontrolled asthma were reduced from baseline among patients using DuoResp® Spiromax® (8.6% versus 64.6%), and were higher in patients with critical handling errors. <b>Conclusions:</b> Effective patient education, correct inhaler technique, treatment adherence and devices associated with high patient satisfaction are interrelated factors key to the successful delivery of inhaled asthma therapy. Inhaler technique and patient device satisfaction should be routinely assessed in treated patients with uncontrolled asthma. Supplemental data for this article can be accessed at publisher’s website.
DOI: 10.5281/zenodo.6421136
title: PASS: An ImageNet replacement for self-supervised pretraining without humans

description: Computer vision has long relied on ImageNet and other large datasets of images sampled from the Internet for pretraining models. However, these datasets have ethical and technical shortcomings, such as containing personal information taken without consent, unclear license usage, biases, and, in some cases, even problematic image content. On the other hand, state-of-the-art pretraining is nowadays obtained with unsupervised methods, meaning that labelled datasets such as ImageNet may not be necessary, or perhaps not even optimal, for model pretraining. We thus propose an unlabelled dataset <strong>PASS</strong>: Pictures without humAns for Self-Supervision. PASS only contains images with CC-BY license and complete attribution metadata, addressing the copyright issue. Most importantly, it contains no images of people at all, and also avoids other types of images that are problematic for data protection or ethics. We show that PASS can be used for pretraining with methods such as MoCo-v2, SwAV and DINO. In the transfer learning setting, it yields similar downstream performances to ImageNet pretraining even on tasks that involve humans, such as human pose estimation. PASS does not make existing datasets obsolete, as for instance it is insufficient for benchmarking. However, it shows that model pretraining is often possible while using safer data, and it also provides the basis for a more robust evaluation of pretraining methods.<br> <br> A simple download script is here: https://github.com/yukimasano/PASS/blob/main/download.sh<br> Visit our webpage here: https://www.robots.ox.ac.uk/~vgg/research/pass/
description: compared to v2.0 we have removed further 131 images that contained humans. See details here: https://github.com/yukimasano/PASS/blob/main/version_history.txt
DOI: 10.5281/zenodo.6420838
title: Supplementary data: "Speed of technological transformations required in Europe to achieve different climate goals"

description: This repository includes results discussed in the paper "Speed of technological transformations required in Europe to achieve different climate goals" In the paper, we used the open energy modelling framework PyPSA, the model PyPSA-Eur-Sec v0.5.0 and the cost and technology assumptions included in the repository technology-data v0.2.0 The directory 'version-baseline' includes the network objects obtained as an outcome of the optimization for the different years and carbon budgets in the baseline scenario. This dataset is released under the Creative Commons Attribution 4.0 International Licence (CC BY 4.0).
DOI: 10.5281/zenodo.6420837
title: Supplementary data: "Speed of technological transformations required in Europe to achieve different climate goals"

description: This repository includes results discussed in the paper "Speed of technological transformations required in Europe to achieve different climate goals" In the paper, we used the open energy modelling framework PyPSA, the model PyPSA-Eur-Sec v0.5.0 and the cost and technology assumptions included in the repository technology-data v0.2.0 The directory 'version-baseline' includes the network objects obtained as an outcome of the optimization for the different years and carbon budgets in the baseline scenario. This dataset is released under the Creative Commons Attribution 4.0 International Licence (CC BY 4.0).
DOI: 10.5281/zenodo.6421476
title: Stiretrus anchorago decontaminated FSCR

description: .
DOI: 10.5281/zenodo.6421475
title: Stiretrus anchorago decontaminated FSCR

description: .
DOI: 10.5255/ukda-sn-855649
title: Testing Different Types of School Recruitment Emails: A Nimble Reach and Engagement Randomized Controlled Trial, 2021

description: The Education Endowment Foundation (EEF) has been leading the management of the Tuition Partners (TP) pillar of the National Tutoring Programme (NTP) in 2020/2021, funded as part of the government coronavirus catch-up package. The TP programme allows schools to access subsidised tuition from a list of 33 tuition partners, quality approved by the EEF, to support pupils who have missed out the most as a result of school closures due to the COVID-19 pandemic. The focus is on supporting disadvantaged pupils, in particular those eligible for Pupil Premium, but with flexibility for schools to select those pupils who they feel were most in need of the support. The EEF commissioned the National Foundation for Educational Research (NFER) to run a reach and engagement nimble randomised controlled trial (RCT) with EM Tuition, an approved NTP Tuition Partner. The RCT explored the impact of two distinctive types of recruitment emails on school sign-up to the TP programme provided by EM Tuition: one email included a testimonial from a headteacher on the benefits of tutoring, the other included a summary of the research evidence of the benefits of tutoring. EM Tuition sent recruitment emails during February and March 2021 to 1,949 primary, secondary, and special schools in areas of England where they offer tutoring provision, including Hertfordshire, Essex, North London, the East of England, and Suffolk. Schools were randomly allocated to receive one of the two types of email messages. A team from NFER analysed the impact of the different recruitment emails on the proportion of schools signing a Memorandum of Understanding (MoU) or providing an Expression of Interest (EoI) for their pupils to receive tutoring from EM Tuition as part of the TP programme.
DOI: 10.34740/kaggle/ds/2062645
title: Cloud Infrastructure Dataset
DOI: 10.3886/e163321
title: Data and Code for: The 2021 Paycheck Protection Program Reboot - Loan Disbursement to Employer and Nonemployer Businesses in Minority Communities

description: Was the $278 billion reboot in early 2021 of the $800 billion Paycheck Protection Program (PPP) disbursed equitably to minority communities? This paper provides the first analysis of how PPP funds were disbursed to minority communities in the third and final round of the program, which was specifically targeted to underserved and disadvantaged communities. Using data on the universe of PPP loans, we find a strong positive relationship between PPP flows, as measured by the number of loans per employer business or loan amounts per employee, and the minority share of the population in the third round. The patterns are similar for loan numbers and amounts to nonemployer businesses. The rebooted PPP that ran from January to May 2021 appears to have been disbursed to minority communities as intended.
DOI: 10.3886/e163321v1
title: Data and Code for: The 2021 Paycheck Protection Program Reboot - Loan Disbursement to Employer and Nonemployer Businesses in Minority Communities

description: Was the $278 billion reboot in early 2021 of the $800 billion Paycheck Protection Program (PPP) disbursed equitably to minority communities? This paper provides the first analysis of how PPP funds were disbursed to minority communities in the third and final round of the program, which was specifically targeted to underserved and disadvantaged communities. Using data on the universe of PPP loans, we find a strong positive relationship between PPP flows, as measured by the number of loans per employer business or loan amounts per employee, and the minority share of the population in the third round. The patterns are similar for loan numbers and amounts to nonemployer businesses. The rebooted PPP that ran from January to May 2021 appears to have been disbursed to minority communities as intended.
DOI: 10.6084/m9.figshare.16915600
title: Genomic variation in tick infestation and cryptic divergence in Tunisian indigenous sheep

description: Background: Ticks are obligate haematophagous ectoparasites considered second to mosquitos as vectors and reservoirs of multiple pathogens of global concern. Individual variation in tick infestation has been reported in indigenous sheep, but the genes regulating the trait are poorly understood. Results: Here, we report 397 genome-wide signatures of selection overlapping 991 genes from the analysis, using four methods (ROH, LR-GWAS, XP-EHH, F<sub>ST</sub>), of 600K SNP genotype data from 165 Tunisian sheep exhibiting high and low tick infestations and piroplasm infections. We considered 45 signatures that were detected by consensus results of at least two methods as high-confidence selection sweep regions. These spanned 104 genes which included immune system function genes, solute carriers and chemokine receptor. One region spanned <i>STX5</i>, that has been associated with tick resistance in cattle, implicating it as a prime candidate in sheep. We also observed <i>RAB6B</i> and<i> TF</i> in a high confidence candidate region that has been associated with growth traits suggesting natural selection is enhancing growth and developmental stability under tick challenge. The analysis also revealed fine-scale genome structure suggesting the existence of cryptic divergence in Tunisian sheep. Conclusion: Our findings provide a genomic reference that could be used to enhance the understanding of genetic architecture of tick resistance and cryptic divergence in indigenous African sheep.
DOI: 10.6084/m9.figshare.16915600.v1
title: Genomic variation in tick infestation and cryptic divergence in Tunisian indigenous sheep

description: Background: Ticks are obligate haematophagous ectoparasites considered second to mosquitos as vectors and reservoirs of multiple pathogens of global concern. Individual variation in tick infestation has been reported in indigenous sheep, but the genes regulating the trait are poorly understood. Results: Here, we report 397 genome-wide signatures of selection overlapping 991 genes from the analysis, using four methods (ROH, LR-GWAS, XP-EHH, F<sub>ST</sub>), of 600K SNP genotype data from 165 Tunisian sheep exhibiting high and low tick infestations and piroplasm infections. We considered 45 signatures that were detected by consensus results of at least two methods as high-confidence selection sweep regions. These spanned 104 genes which included immune system function genes, solute carriers and chemokine receptor. One region spanned <i>STX5</i>, that has been associated with tick resistance in cattle, implicating it as a prime candidate in sheep. We also observed <i>RAB6B</i> and<i> TF</i> in a high confidence candidate region that has been associated with growth traits suggesting natural selection is enhancing growth and developmental stability under tick challenge. The analysis also revealed fine-scale genome structure suggesting the existence of cryptic divergence in Tunisian sheep. Conclusion: Our findings provide a genomic reference that could be used to enhance the understanding of genetic architecture of tick resistance and cryptic divergence in indigenous African sheep.
DOI: 10.6084/m9.figshare.19533463
title: PR_dataset_Y.zip

description: this dataset contain 474602 PR from 49 open source projects. Every PR have 23 manual features and a description and a diff message.
DOI: 10.6084/m9.figshare.19533463.v2
title: PR_dataset_Y.zip

description: this dataset contain 474602 PR from 49 open source projects. Every PR have 23 manual features and a description and a diff message.
DOI: 10.6084/m9.figshare.19533463.v1
title: PR_dataset_Y.zip

description: this dataset contain 474602 PR from 49 open source projects. Every PR have 23 manual features and a description and a diff message.
DOI: 10.3886/e161081
title: Data and Code for Simplicity and Probability Weighting in Choice under Risk

description: This is the simulation input and code for `Simplicity and Probability Weighting in Choice under Risk.'<br>
DOI: 10.3886/e161081v1
title: Data and Code for Simplicity and Probability Weighting in Choice under Risk

description: This is the simulation input and code for `Simplicity and Probability Weighting in Choice under Risk.'<br>
DOI: 10.3886/e159881
title: Data and Code for: Improving Willingness-to-Pay Elicitation by Including a Benchmark Good

description: <b>Abstract:</b> We propose and validate a simple way to augment the standard Becker-DeGroot-Marschak method that researchers use to elicit willingness to pay (WTP) for a good. The augmentation is to measure WTP for another good (“benchmark good''), one unrelated to both the good the researcher is interested in and the independent variables of interest, and to use WTP for the benchmark good as a control variable in analyses. We illustrate the method and how it can eliminate noise in measured WTP using data collected in Uganda.
DOI: 10.3886/e159881v1
title: Data and Code for: Improving Willingness-to-Pay Elicitation by Including a Benchmark Good

description: <b>Abstract:</b> We propose and validate a simple way to augment the standard Becker-DeGroot-Marschak method that researchers use to elicit willingness to pay (WTP) for a good. The augmentation is to measure WTP for another good (“benchmark good''), one unrelated to both the good the researcher is interested in and the independent variables of interest, and to use WTP for the benchmark good as a control variable in analyses. We illustrate the method and how it can eliminate noise in measured WTP using data collected in Uganda.
DOI: 10.5281/zenodo.6417226
title: Model data of White et al. (2022, Climate of the Past)

description: This contains the scripts and model and proxy data to reproduce Figures 1, 2, 3, 4, 7, 8, and 10 in White et al. (2022, Climate of the Past). Abstract. Paleoclimate reconstructions have identified a period of exceptional summer and winter cooling in the North Atlantic region following the eruption of the tropical volcano Huaynaputina (Peru) in 1600 CE CE3 . A previous study based on numerical climate simulations has indicated a potential mechanism for the persistent cooling in a slowdown of the North Atlantic subpolar gyre (SPG) and consequent ocean–atmosphere feedbacks. To examine whether this mechanism could have been triggered by the Huaynaputina eruption, this study compares the simulations used in the previous study both with and without volcanic forcing and this SPG shift to reconstructions from annual proxies in natural archives and historical written records as well as contemporary historical observations of relevant climate and environmental conditions. These reconstructions and observations demonstrate patterns of cooling and sea-ice expansion consistent with, but not indicative of, an eruption trigger for the proposed SPG slowdown mechanism. The results point to possible improvements in future model–data comparison studies utilizing historical written records. Moreover, we consider historical societal impacts and adaptations associated with the reconstructed climatic and environmental<br> anomalies.
DOI: 10.5281/zenodo.6417225
title: Model data of White et al. (2022, Climate of the Past)

description: This contains the scripts and model and proxy data to reproduce Figures 1, 2, 3, 4, 7, 8, and 10 in White et al. (2022, Climate of the Past). Abstract. Paleoclimate reconstructions have identified a period of exceptional summer and winter cooling in the North Atlantic region following the eruption of the tropical volcano Huaynaputina (Peru) in 1600 CE CE3 . A previous study based on numerical climate simulations has indicated a potential mechanism for the persistent cooling in a slowdown of the North Atlantic subpolar gyre (SPG) and consequent ocean–atmosphere feedbacks. To examine whether this mechanism could have been triggered by the Huaynaputina eruption, this study compares the simulations used in the previous study both with and without volcanic forcing and this SPG shift to reconstructions from annual proxies in natural archives and historical written records as well as contemporary historical observations of relevant climate and environmental conditions. These reconstructions and observations demonstrate patterns of cooling and sea-ice expansion consistent with, but not indicative of, an eruption trigger for the proposed SPG slowdown mechanism. The results point to possible improvements in future model–data comparison studies utilizing historical written records. Moreover, we consider historical societal impacts and adaptations associated with the reconstructed climatic and environmental<br> anomalies.
DOI: 10.6084/m9.figshare.14785278.v2
title: Genome Divergence and Dynamics in the Thin-Tailed Desert Sheep From Sudan

description: The data set includes plink ped/map files of 577, 207 autosomals of 120 sheep from African Thin-tailed Desert Sheep from Sudan.
DOI: 10.3886/e158141
title: Data and Code for: Structural Vector Autoregressions with Imperfect Identifying Information

description: The problem of identification is often the core challenge of empirical economic research. The traditional approach to identification is to bring in additional information in the form of identifying assumptions, such as restrictions that certain magnitudes have to be zero. In this paper we suggest that what are usually thought of as identifying assumptions should more generally be described as information that the analyst had about the economic structure before seeing the data. Such information is most naturally represented as a Bayesian prior distribution over certain features of the economic structure. Here we provide the data and code for an empirical illustration of this approach.