cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.4793719
title: Influence of flooding on exchangeability and release of stable and radioactive cesium in contaminated paddy soil

description: An incubation experiment was conducted to clarify how soil flooding influences the mobility of radioactive cesium (RCs: <sup>134</sup>Cs and <sup>137</sup>Cs) in paddy soil after aging, focusing on the effects of ammonium increase and soil reduction. We used two contaminated paddy soils (A and B, both Gleyic Fluvisols) aged for 26 months after the Tokyo Electric Power Company’s Fukushima Daiichi Nuclear Power Plant accidents, and analyzed both the RCs and stable cesium (<sup>133</sup>Cs). The soils were incubated in a flooded condition, with or without the addition of ammonium fertilizer, for 1, 15 and 30 d, and in an unflooded condition for 30 d. After the incubation periods, we quantified <sup>133</sup>Cs concentration in the soil solution, <sup>133</sup>Cs and RCs released from soil in 0.01 mol L<sup>–1</sup> calcium chloride solution as parameters of release intensity, and <sup>133</sup>Cs and RCs extracted with 1 mol L<sup>−1</sup> ammonium acetate solution as exchangeable quantities, and analyzed their relationship with ammonium content and redox condition in soil. The increase of ammonium by both ammonification and fertilizer application promoted release of exchangeable <sup>133</sup>Cs and RCs to the soil solution and calcium solution. When ammonium content became low during unflooded incubation, exchangeable <sup>133</sup>Cs and RCs themselves decreased. When soil reduction progressed with flooded incubation, however, exchangeable <sup>133</sup>Cs and RCs decreased, despite high ammonium content. To estimate the influence of soil reduction on the exchangeability of RCs, soil A was sequentially extracted with sodium hydrosulfite (a reducing agent) and ammonium acetate solutions. Compared with a control treatment using sodium sulfate instead of sodium hydrosulfite, the total RCs extracted by the reducing treatment was 42% lower, indicating that soil reduction decreases RCs exchangeability. Through these analyses of <sup>133</sup>Cs and RCs, we conclude that soil flooding influences the mobility of aged RCs through two opposite effects: the release of exchangeable RCs into soil solution is enhanced with increased ammonium, while the exchangeable RCs itself decreases due to soil reduction.
DOI: 10.6084/m9.figshare.4793716
title: Birnie-Gauvin et al. Effects of cortisol on OS.xlsx

description: This data set consists of all short-term and long-term oxidative stress marker values as well as mass and length for fish in control, sham and cortisol-treated groups.
DOI: 10.6084/m9.figshare.4793653
title: folder_14

description: Honeybee accelerometer recordings FLAC
DOI: 10.6084/m9.figshare.4793677
title: Impala_road_response_KrugerNP_data_REVISED.csv

description: This is an updated dataset file which includes a new comments field with notes for some observations.
DOI: 10.6084/m9.figshare.4793719.v1
title: Influence of flooding on exchangeability and release of stable and radioactive cesium in contaminated paddy soil

description: An incubation experiment was conducted to clarify how soil flooding influences the mobility of radioactive cesium (RCs: <sup>134</sup>Cs and <sup>137</sup>Cs) in paddy soil after aging, focusing on the effects of ammonium increase and soil reduction. We used two contaminated paddy soils (A and B, both Gleyic Fluvisols) aged for 26 months after the Tokyo Electric Power Company’s Fukushima Daiichi Nuclear Power Plant accidents, and analyzed both the RCs and stable cesium (<sup>133</sup>Cs). The soils were incubated in a flooded condition, with or without the addition of ammonium fertilizer, for 1, 15 and 30 d, and in an unflooded condition for 30 d. After the incubation periods, we quantified <sup>133</sup>Cs concentration in the soil solution, <sup>133</sup>Cs and RCs released from soil in 0.01 mol L<sup>–1</sup> calcium chloride solution as parameters of release intensity, and <sup>133</sup>Cs and RCs extracted with 1 mol L<sup>−1</sup> ammonium acetate solution as exchangeable quantities, and analyzed their relationship with ammonium content and redox condition in soil. The increase of ammonium by both ammonification and fertilizer application promoted release of exchangeable <sup>133</sup>Cs and RCs to the soil solution and calcium solution. When ammonium content became low during unflooded incubation, exchangeable <sup>133</sup>Cs and RCs themselves decreased. When soil reduction progressed with flooded incubation, however, exchangeable <sup>133</sup>Cs and RCs decreased, despite high ammonium content. To estimate the influence of soil reduction on the exchangeability of RCs, soil A was sequentially extracted with sodium hydrosulfite (a reducing agent) and ammonium acetate solutions. Compared with a control treatment using sodium sulfate instead of sodium hydrosulfite, the total RCs extracted by the reducing treatment was 42% lower, indicating that soil reduction decreases RCs exchangeability. Through these analyses of <sup>133</sup>Cs and RCs, we conclude that soil flooding influences the mobility of aged RCs through two opposite effects: the release of exchangeable RCs into soil solution is enhanced with increased ammonium, while the exchangeable RCs itself decreases due to soil reduction.
DOI: 10.6084/m9.figshare.4793650
title: Computer code in R

description: Complete R code to reproduce tables and figures in:<br><br>Caceres and Gonzalez, "A measure of agreement across numerous conditions: Reproducibility of co-expression networks across tissues"<br><br>http://biorxiv.org/content/early/2017/04/18/125450.<br><br>See README file<br>
DOI: 10.6084/m9.figshare.4793677.v1
title: Impala_road_response_KrugerNP_data_REVISED.csv

description: This is an updated dataset file which includes a new comments field with notes for some observations.
DOI: 10.6084/m9.figshare.4793716.v1
title: Birnie-Gauvin et al. Effects of cortisol on OS.xlsx

description: This data set consists of all short-term and long-term oxidative stress marker values as well as mass and length for fish in control, sham and cortisol-treated groups.
DOI: 10.6084/m9.figshare.4793647
title: KEGG pathways used in the analysis

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793653.v1
title: folder_14

description: Honeybee accelerometer recordings FLAC
DOI: 10.6084/m9.figshare.4793647.v1
title: KEGG pathways used in the analysis

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.15131/shef.data.4793635
title: APCs purchased by the University of Sheffield from COAF/Wellcome open access grant during 2014/2015

description: Open access charges paid by the University of Sheffield for Wellcome/COAF funded research between 1st of October 2014 and 30th September 2015. Spreadsheet is in CSV format.
DOI: 10.6084/m9.figshare.4793650.v1
title: Computer code in R

description: Complete R code to reproduce tables and figures in:<br><br>http://biorxiv.org/content/early/2017/04/18/125450.<br><br>See README file<br>
DOI: 10.6084/m9.figshare.4793611
title: Expression data for BRAINEAC with R code to produce coexpression networks

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.15131/shef.data.4793635.v2
title: APCs purchased by the University of Sheffield from COAF/Wellcome open access grant during 2014/2015

description: Open access charges paid by the University of Sheffield for Wellcome/COAF funded research between 1st of October 2014 and 30th September 2015. Spreadsheet is in CSV format.
DOI: 10.15131/shef.data.4793635.v1
title: APCs purchased by the University of Sheffield for COAF/Welcome funded research 2014/2015

description: Open access charges paid by the University of Sheffield for Wellcome/COAF funded research between 1st of October 2014 and 30th September 2015. Spreadsheet is in CSV format.
DOI: 10.6084/m9.figshare.4793605
title: Expression data for GTEX with R code to produce coexpression networks

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793605.v1
title: Expression data for GTEX with R code to produce coexpression networks

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793578
title: Fast corroding, thin magnesium coating displays antibacterial effects and low cytotoxicity

description: Bacterial colonisation and biofilm formation are characteristics of implant-associated infections. In search of candidates for improved prosthetic materials, fast corroding Mg-based coatings on titanium surfaces were examined for their cytotoxic and antimicrobial properties. Human osteoblasts and <i>Staphylococcus epidermidis</i> were each cultured on cylindrical Ti samples coated with a thin layer of Mg/Mg<sub>45</sub>Zn<sub>5</sub>Ca, applied <i>via</i> magnetron sputtering. Uncoated titanium samples served as controls. <i>S. epidermidis</i> was quantified by counting colony forming units. The biofilm-bound fraction was isolated <i>via</i> ultrasonic treatment, and the planktonic fraction <i>via</i> centrifugation. Biofilm-bound <i>S. epidermidis</i> was significantly decreased by approximately four to five orders of magnitude in both Mg- and Mg<sub>45</sub>Zn<sub>5</sub>Ca-coated samples after seven days compared to the control. The osteoblast viability was within the tolerance threshold of 70% stated in DIN EN ISO 10993-5:2009-10 for Mg (~80%) but not for Mg<sub>45</sub>Zn<sub>5</sub>Ca (~25%). Accordingly, Mg-coated titanium was identified as a promising candidate for an implant material with antibacterial properties and low cytotoxicity levels. The approach of exploiting fast corrosion contrasts with existing methods, which have generally focused on reducing corrosion.
DOI: 10.6084/m9.figshare.4793578.v1
title: Fast corroding, thin magnesium coating displays antibacterial effects and low cytotoxicity

description: Bacterial colonisation and biofilm formation are characteristics of implant-associated infections. In search of candidates for improved prosthetic materials, fast corroding Mg-based coatings on titanium surfaces were examined for their cytotoxic and antimicrobial properties. Human osteoblasts and <i>Staphylococcus epidermidis</i> were each cultured on cylindrical Ti samples coated with a thin layer of Mg/Mg<sub>45</sub>Zn<sub>5</sub>Ca, applied <i>via</i> magnetron sputtering. Uncoated titanium samples served as controls. <i>S. epidermidis</i> was quantified by counting colony forming units. The biofilm-bound fraction was isolated <i>via</i> ultrasonic treatment, and the planktonic fraction <i>via</i> centrifugation. Biofilm-bound <i>S. epidermidis</i> was significantly decreased by approximately four to five orders of magnitude in both Mg- and Mg<sub>45</sub>Zn<sub>5</sub>Ca-coated samples after seven days compared to the control. The osteoblast viability was within the tolerance threshold of 70% stated in DIN EN ISO 10993-5:2009-10 for Mg (~80%) but not for Mg<sub>45</sub>Zn<sub>5</sub>Ca (~25%). Accordingly, Mg-coated titanium was identified as a promising candidate for an implant material with antibacterial properties and low cytotoxicity levels. The approach of exploiting fast corrosion contrasts with existing methods, which have generally focused on reducing corrosion.
DOI: 10.6084/m9.figshare.4793566
title: New late Paleocene (late middle Tiffanian) mammals from the Roche Percée local fauna, south-eastern Saskatchewan, Canada

description: An exceptionally large and diverse assemblage of mammals from the early late Paleocene (about 58 million years ago) has been collected from the Ravenscrag Formation near Roche Percée, south-eastern Saskatchewan, Canada. Previous research of the Roche Percée local fauna has examined only a small portion of the mammals, with the vast majority of taxa remaining unstudied. Identification and descriptions of these latter taxa are provided here. With these new additions, the assemblage is now known to include 44 mammalian species. Notable among these findings is the substantial collection of the erinaceomorph lipotyphlan <i>Litocherus lacunatus</i>, the remarkable diversity of viverravid carnivorans, and the recovery of some of the first known elements of the upper dentition of the pantolestid <i>Besseocetor pilodontus</i>. A complete description of the mammalian fauna supports previous assignments of a late middle Tiffanian North American Land Mammal Age (Ti4 lineage zone) to the Roche Percée local fauna. Faunal comparisons further suggest a close similarity of the Roche Percée assemblage to the near contemporaneous Divide Quarry local fauna from the Bighorn Basin, northern Wyoming, but also reveal some similarities to slightly older middle Tiffanian local faunas (Ti3 lineage zone) at localities in the Paskapoo Formation of central Alberta. The specimens from the Roche Percée local fauna represent the largest and most taxonomically diverse assemblage of late middle Tiffanian mammals yet known, offering a unique perspective on mammalian evolution and diversity in North America during this time interval.
DOI: 10.6084/m9.figshare.4793569
title: The politics of fiscal rules within the European Union: a dynamic analysis of fiscal rules stringency

description: Over the last 25 years, fiscal rules (FRs) have been proliferating in Europe bringing in-depth change to the architecture of fiscal institutions. This paper investigates different theories explaining the changes in national fiscal rules stringency (FRS) using a panel of 28 European countries from 1990 to 2013. The authors found evidence that fiscal stress prevents fiscal reform in the short term, and leads to stronger fiscal rules in the long term. This pattern corresponds to the ‘war of attrition’ argument formulated by Alesina and Drazen [(1989) ‘Why are stabilizations delayed?’, <i>The American Economic Review</i> 81(5): 1170–88]. The authors found evidence that countries eager to join the EU showed their commitment to Maastricht targets by incorporating FRs into national laws. Countries facing financial difficulties after the 2009 sovereign debt crisis were coerced into adopting more stringent FRs to obtain fiscal support from the EU. Both cases support the idea that coercive diplomacy might explain the strength of national fiscal rules in the EU.
DOI: 10.6084/m9.figshare.4793572
title: coexpression network for putamen in BRAINEAC

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793566.v1
title: New late Paleocene (late middle Tiffanian) mammals from the Roche Percée local fauna, south-eastern Saskatchewan, Canada

description: An exceptionally large and diverse assemblage of mammals from the early late Paleocene (about 58 million years ago) has been collected from the Ravenscrag Formation near Roche Percée, south-eastern Saskatchewan, Canada. Previous research of the Roche Percée local fauna has examined only a small portion of the mammals, with the vast majority of taxa remaining unstudied. Identification and descriptions of these latter taxa are provided here. With these new additions, the assemblage is now known to include 44 mammalian species. Notable among these findings is the substantial collection of the erinaceomorph lipotyphlan <i>Litocherus lacunatus</i>, the remarkable diversity of viverravid carnivorans, and the recovery of some of the first known elements of the upper dentition of the pantolestid <i>Besseocetor pilodontus</i>. A complete description of the mammalian fauna supports previous assignments of a late middle Tiffanian North American Land Mammal Age (Ti4 lineage zone) to the Roche Percée local fauna. Faunal comparisons further suggest a close similarity of the Roche Percée assemblage to the near contemporaneous Divide Quarry local fauna from the Bighorn Basin, northern Wyoming, but also reveal some similarities to slightly older middle Tiffanian local faunas (Ti3 lineage zone) at localities in the Paskapoo Formation of central Alberta. The specimens from the Roche Percée local fauna represent the largest and most taxonomically diverse assemblage of late middle Tiffanian mammals yet known, offering a unique perspective on mammalian evolution and diversity in North America during this time interval.
DOI: 10.6084/m9.figshare.4793596.v1
title: S1 File

description: Supporting Information
DOI: 10.6084/m9.figshare.4793569.v1
title: The politics of fiscal rules within the European Union: a dynamic analysis of fiscal rules stringency

description: Over the last 25 years, fiscal rules (FRs) have been proliferating in Europe bringing in-depth change to the architecture of fiscal institutions. This paper investigates different theories explaining the changes in national fiscal rules stringency (FRS) using a panel of 28 European countries from 1990 to 2013. The authors found evidence that fiscal stress prevents fiscal reform in the short term, and leads to stronger fiscal rules in the long term. This pattern corresponds to the ‘war of attrition’ argument formulated by Alesina and Drazen [(1989) ‘Why are stabilizations delayed?’, <i>The American Economic Review</i> 81(5): 1170–88]. The authors found evidence that countries eager to join the EU showed their commitment to Maastricht targets by incorporating FRs into national laws. Countries facing financial difficulties after the 2009 sovereign debt crisis were coerced into adopting more stringent FRs to obtain fiscal support from the EU. Both cases support the idea that coercive diplomacy might explain the strength of national fiscal rules in the EU.
DOI: 10.6084/m9.figshare.4793563
title: Interpreting fiscal accounting rules in the European Union

description: In the European Union, the creation of public debt statistics starts with member state governments’ reports. The EU’s statistical agency – Eurostat – then revises. How do these actors’ incentives shape reported numbers? Governments have incentives to take a more favourable view of often ambiguous accounting rules than Eurostat. Lower debt improves governments’ performance with domestic and external audiences. Eurostat is tasked with monitoring budgets for ‘excessive’ debts. We expect governments to present debt figures that Eurostat then revises upwards. This is more likely when governments have high debts, especially when in the eurozone, and prior to elections. Financial crises heighten the number of policies needing interpretation and both actors have more incentives to shape the numbers. We examine these propositions using Eurostat’s debt revisions. We find debts are revised upwards more for eurozone countries with higher debt levels and years with unscheduled elections. Financial stress strengthens these effects.
DOI: 10.6084/m9.figshare.4793494
title: coexpression network for frontal cortex in BRAINEAC

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793560
title: S1 File.xlsx

description: Supporting Information
DOI: 10.6084/m9.figshare.4793542
title: coexpression network for hippocampus in BRAINEAC

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793563.v1
title: Interpreting fiscal accounting rules in the European Union

description: In the European Union, the creation of public debt statistics starts with member state governments’ reports. The EU’s statistical agency – Eurostat – then revises. How do these actors’ incentives shape reported numbers? Governments have incentives to take a more favourable view of often ambiguous accounting rules than Eurostat. Lower debt improves governments’ performance with domestic and external audiences. Eurostat is tasked with monitoring budgets for ‘excessive’ debts. We expect governments to present debt figures that Eurostat then revises upwards. This is more likely when governments have high debts, especially when in the eurozone, and prior to elections. Financial crises heighten the number of policies needing interpretation and both actors have more incentives to shape the numbers. We examine these propositions using Eurostat’s debt revisions. We find debts are revised upwards more for eurozone countries with higher debt levels and years with unscheduled elections. Financial stress strengthens these effects.
DOI: 10.6084/m9.figshare.4793488
title: Dataset Godoy et al. 2014 Ecology Letters

description: This dataset contains information of the 18 different species included in the following publication<br>Godoy, O., Kraft, N. J., & Levine, J. M. (2014). Phylogenetic relatedness and the determinants of competitive outcomes. <i>Ecology Letters</i>, <i>17</i>(7), 836-844.<br><br>These are a matrix containing competitive coefficients (alpha_estimates_row_is_a_target.csv), and a matrix containing information of species' vital rates (species vital rates.csv). <br>Cells containing NA in the file named "alpha_estimates_row_is_a_target.csv" correspond to these cases where we had little confidence in the estimate of the interaction coefficient between a pair of species.
DOI: 10.6084/m9.figshare.4793494.v1
title: coexpression network for frontal cortex in BRAINEAC

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793560.v1
title: S1 File.xlsx

description: Supporting Information
DOI: 10.6084/m9.figshare.4793542.v1
title: coexpression network for hippocampus in BRAINEAC

description: Data used in <br><br>http://biorxiv.org/content/early/2017/04/18/125450
DOI: 10.6084/m9.figshare.4793437
title: Sample items from a survey measure of mathematical proficiency for teaching

description: Sample PCK items from the MPT survey measure illustrate the content area of multidigit addition and subtraction. The motivation and teaching self-efficacy survey questions (self-concept of ability, anxiety, value, and teaching self-efficacy) used PCK questions to describe the mathematical scope of the construct.
DOI: 10.6084/m9.figshare.4793428
title: Carbon nanopowder acts as a Trojan-horse for benzo(α)pyrene in <i>Danio rerio</i> embryos

description: Carbon-based nanoparticles (CBNs) are largely distributed worldwide due to fossil fuel combustion and their presence in many consumer products. In addition to their proven toxicological effects in several biological models, attention in recent years has focussed on the role played by CBNs as Trojan-horse carriers for adsorbed environmental pollutants. This role has not been conclusively determined to date because CBNs can decrease the bioavailability of contaminants or represent an additional source of intake. Herein, we evaluated the intake, transport and distribution of one of the carbon-based powders, the so-called carbon nanopowder (CNPW), and benzo(α)pyrene, when administered alone and in co-exposure to <i>Danio rerio</i> embryos. Data obtained by means of advanced microscopic techniques illustrated that the “particle-specific” effect induced a modification in the accumulation of benzo(α)pyrene, which is forced to follow the distribution of the physical pollutant instead of its natural bioaccumulation. The combined results from functional proteomics and gene transcription analysis highlighted the different biochemical pathways involved in the action of the two different contaminants administered alone and when bound together. In particular, we observed a clear change in several proteins involved in the homeostatic response to hypoxia only after exposure to the CNPW or co-exposure to the mixture, whereas exposure to benzo(α)pyrene alone mainly modified structural proteins. The entire dataset suggested a Trojan-horse mechanism involved in the biological impacts on <i>Danio rerio</i> embryos especially due to different bioaccumulation pathways and cellular targets.