cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.4121/14309234.v1
title: [1] Highest-resolution SPH simulations of a 2D dam-break flow against a vertical wall. Output data for H/dx=6400, 82M fluid particles

description: This dataset is part of the collection 'High-resolution SPH simulations of a 2D dam-break flow against a vertical wall' at https://doi.org/10.4121/c.5353691<br><br>It contains the output of the simulation at the spatial resolution parameter H/dx=6400, out of the set (800,1600,3200,6400). <br>The files are the output of the pre-processing, proper-processing and post-processing stages of a simulation carried out with an slightly adapted version of the SPH solver DualSPHysics 5.0.<br>The files in this one dataset enable the user to inspect, visualise, reproduce, or restart simulations with 82M fluid particles. <br><br>Please privilege getting familiar with the entry-point dataset "<b>[0] SPH simulations of a 2D dam-break flow against a vertical wall. General information on the collection</b>" at https://doi.org/10.4121/14309240 for context and guidance on the simulations and organisation of all datasets. Reading the file <b>Commentary.pdf</b> first is strongly recommended. The images of all simulated fields are also provided there, which can help the users decide their best approach to the collection.<br><br>A specific README.txt file is part of this dataset.<br>When using this dataset, please cite the overarching <b>collection</b> instead: Lipari, Giordano; Vuik, Cornelis (2021): High-resolution SPH simulations of a 2D dam-break flow against a vertical wall. 4TU.ResearchData. Collection. https://doi.org/10.4121/c.5353691
DOI: 10.6084/m9.figshare.13356917.v1
title: RISED - Data SMA & SMK Berdasarkan Provinsi di Indonesia Tahun 2005-2018

description: Data SMA dan SMK mencakup jumlah sekolah, guru, murid dan jumlah lulusan SMA dan SMK di masing-masing provinsi di Indonesia selama tahun 2005-2018 (kecuali data lulusan tersedia tahun 2010-2018). Data bersumber dari Statistik Indonesia (Badan Pusat Statistik), Statistik SMK & Statistik SMA (Kementerian Pendidikan dan Kebudayaan, Sekretariat Jendral Pusat Data dan Statistik Pendidikan dan Kebudayaan)
DOI: 10.6084/m9.figshare.25892944.v2
title: T1 and T2 measurements across multiple 0.55 T MRI systems using open-source vendor-neutral sequences

description: PurposeTo compare T1 and T2 measurements across commercial and prototype 0.55 T MRI systems in both phantom and healthy participants using the same vendor-neutral pulse sequences, reconstruction, and analysis methods.MethodsStandard spin echo measurements and abbreviated protocol measurements of T1, B1 and T2 were made on two prototype 0.55 T systems and two commercial 0.55 T systems using an ISMRM/NIST system phantom. Additionally, five healthy participants were imaged at each system using the abbreviated protocol for T1, B1 and T2 measurement. The phantom measurements were compared to NMR-based reference measurements to determine accuracy, and both phantom and in vivo measurements were compared to assess reproducibility and differences between the prototype and commercial systems.ResultsVendor-neutral sequences were implemented across all four systems, and the code for pulse sequences and reconstruction is freely available. For participants, there was no difference in the mean T1 and T2 relaxation times between the prototype and commercial systems. In the phantom, there were no significant differences between the prototype and commercial systems for T1 and T2 measurements using the abbreviated protocol.ConclusionQuantitative T1 and T2 measurements at 0.55 T in phantom and healthy participants are not statistically different across the prototype and commercial systems.
DOI: 10.6084/m9.figshare.24972189.v1
title: Different Experiments for Precipitation Forecasting over South China during the Rainy Season

description: Dataset for "Different Experiments for Precipitation Forecasting over South China during the Rainy Season"
DOI: 10.6084/m9.figshare.8067803.v1
title: JM22.tar.gz

description: MD simulations of the JM22 TCR.<br>
DOI: 10.6084/m9.figshare.20527995.v1
title: ZnO paper.xlsx

description: The data shows the result of the analysis of different streams (Feed, Permeate, Retentate) from a system using ceramic membranes combined with photocatalytic nanoparticles for the treatment of surface water
DOI: 10.6084/m9.figshare.7571228.v1
title: Dipterommatidae fam. nov., a new family of parasitic wasps (Hymenoptera: Mymarommatoidea) in mid-Cretaceous Burmese amber: the first case of morphological dipterigy in flying Hymenoptera

description: Dipteromma paradoxa gen. et sp. nov., figures and image stacksImage stacks of the holotype specimen of fossil Hymenoptera, Dipteromma paradoxa gen. et sp. nov.Dipterommatidae, a new family of parasitic wasps (Hymenoptera: Mymarommatoidea) in mid-Cretaceous Burmese amber: The first case of morphological diptery in flying HymenopteraRasnitsyn et al 2019Files are 2x downscaled and compressed to save on storage space.Small-sized hymenopterans are important components of modern ecosystems, where they act as egg parasites and hyperparasites of small herbivorous arthropods (e.g., aphids, scale insects). Mymarommatoidea are among the smallest hymenopterans and their actively flying adults have four wings like all known members of the order Hymenoptera. Mymarommatoids were first described as fossils, and although their extant 12 species are distributed worldwide, little is known about their biology. They seem to be absent from the tropics presently, and only two species in two families of Mymarommatoidea are known from the tropical mid-Cretaceous Burmese amber. Here we describe a new family, Dipterommatidae fam. nov., the fourth in Mymarommatoidea, with a single genus and species <i>Dipteromma paradoxa </i>gen. sp. nov., based on a female from the same source. The fossil is unique in the superfamily and in the whole order Hymenoptera in totally lacking hindwings. Complete loss of the hindwings in an actively flying insect is rare. Among the few examples is a bloodsucking mecopteran <i>Parapolycentropus</i>, another bizarre endemic taxon of the rich mid-Cretaceous Burmese biota.<br><br>
DOI: 10.6084/m9.figshare.1230050.v1
title: Mt Gambier Carbonate

description: Micro-Computed Tomography (micro-CT) segmented image of Mt Gambier Carbonate. The micro-CT image is segmented according to the variation of grey values between grains (bright- 255 grey value) and pores (dark- 0 grey value) using the watershed segmentation algorithm in the Avizo software. Details of the images (voxel resolution and image size) is present as a text file. The image can be visualized in visualization software such as Fiji ((http://fiji.sc/Fiji) or Avizo. If you utilise this in a scientific publication then please mention in the acknowledgements that this data is courtesy of Qatar Carbonates and Carbon Storage Research Centre, Imperial College London. For more information, please contact Saurabh M Shah at saurabh.shah10@imperial.ac.uk or Edo S Boek at e.boek@imperial.ac.uk
DOI: 10.6084/m9.figshare.21710438.v1
title: degree of organ damage and inflammatory markers in sepsis mice models data and histopathology.xlsx

description: Degree of organ damage and inflammatory markers in sepsis mice models inducted by various doses of lipopolysaccharides
DOI: 10.6084/m9.figshare.3114310.v1
title: Global filovirus surveillance in bats

description: This dataset collates all published data reporting the results of diagnostic tests for all filoviruses in bat species of the world. We report the total number of bats sampled, the number that tested positive and the number that were confirmed negative for each species, with citations for the original publication.
DOI: 10.17632/h2zyr94hhk
title: Criterios Moriyama

description: Tablas de frecuencia utilizados para el análisis de los criterios Moriyama en el análisis de un cuestionario para evaluar la percepción de la población joven sobre la corresponsabilidad.
DOI: 10.6084/m9.figshare.12401039.v1
title: Supplemental Table S1. Primers for qPCR

description: Primers for qPCR
DOI: 10.6084/m9.figshare.11250116.v1
title: Peru Intact Forest Landscape Corridors

description: Corridors between tropical Intact Forest Landscapes (Potapov et al. 2017) were derived from the UMD Global Land Analysis and Discovery lab's Global Forest Change Database (Hansen et al. 2013).<br><br>Tree cover from the year 2000 and forest loss and gain between 2000 and 2012 were used as inputs to a corridor algorithm which maps a large number of corridors between source and target patches for the years 2000 and again for 2012. The algorithm preferentially maps corridors through high tree cover areas.<br><br>Pixel values are weighted by the amount of tree cover in source and target patches and the importance of each pixel for connecting patches. The higher the value, the more important a pixel is for connecting patches with a large amount of tree cover. Pixels with a value of zero are not within any corridor. Corridors were not mapped for patches &gt; 130 km apart. The algorithm assumes a linear relationship between forest cover and the ability of animals to move through the landscape. Corridors were clipped to the boundary of Peru and resampled to a resolution of 540 m.<br>
DOI: 10.6084/m9.figshare.25981450.v15
title: 2020-2021 Changjiang estuary dissolved oxygen isotopic compositions and results of Monte-Carlo Mixing experiment

description: Understanding the complex processes driving oxygen depletion is challenging. The nonlinear relationship between dissolved oxygen (DO) isotopic composition (δ<sup>18</sup>O ) and its concentration makes δ<sup>18</sup>O a unique tracer for studying O2 cycling in oxygen depletion zones. Based on the DO δ<sup>18</sup>O compositions from four cruises conducted from summer 2020 to spring 2021 in the Changjiang Estuary, we identified a dynamic northern oxygen depletion zone (NODZ) with seasonally varying DO δ<sup>18</sup>O values, and a relatively stable southern oxygen depletion zone (SODZ). To quantify the contributions of low oxygen water mixing and respiration to oxygen depletion, we conducted a Monte-Carlo mixing experiment involving high salinity and low oxygen water (HSLO) and mixed layer water (MLW). Our findings indicated that during summer of 2020, HSLO mixing contributed to 59% to 100% of oxygen deficit in oxygen depletion zones, with SODZ exhibiting a HSLO mixing contribution of more than 77%. Respiration contributed to the remaining oxygen deficit, with water column respiration consuming approximately 2.5 times more oxygen than sediment oxygen consumption. In the NODZ, oxygen depletion was further enhanced by water column stratification, respiration and seafloor topography. Overall, the influx of HSLO was a key trigger for oxygen depletion in the Changjiang Estuary. The spatial and temporal variations of the two oxygen depletion zones were closely linked to the intrusion and retreat of HSLO from summer to autumn. Our findings highlight the importance of utilizing DO δ<sup>18</sup>O to differentiate and quantify biological and physical processes in coastal oxygen depletion zones.File description：Table S1: Data for this study, including latitude and longitude, sampling depth, temperature, salinity, δO<sub>2</sub>/Ar,δ<sup>18</sup>O,[O<sub>2</sub>],[O<sub>2</sub>]/[O<sub>2</sub>]<sub>sat</sub>, densityTable S3: The results of Monte-Carlo mixing experiments in all samples beneath mixed layer: the fraction of HSLO in different water masses, [O<sub>2</sub>] and δ<sup>18</sup>O after mixing from Monte-Carlo mixing experiment. Oxygen depletion caused by mixing and total oxygen depletion. The contribution of mixing and respiration to oxygen deficit. The apparent respiration fractionation factor and the proportion of WCR and SOC to oxygen deficit as well as the observed salinity, [O<sub>2</sub>] and δ<sup>18</sup>O beneath the mixed layer<br><br>
DOI: 10.17632/m7vgpppb97
title: ASEP/MD: A program for the calculation of solvent effects combining QM/MM methods and the mean field approximation

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract ASEP/MD is a computer program designed to implement the Averaged Solvent Electrostatic Potential/Molecular Dynamics (ASEP/MD) method developed by our group. It can be used for the study of solvent effects and properties of molecules in their liquid state or in solution. It is written in the FORTRAN90 programming language, and should be easy to follow, understand, maintain and modify. Given the nature of the ASEP/MD method, external programs are needed for the quantum calculations and molecula... Title of program: ASEP/MD Catalogue Id: ADSF_v1_0 Nature of problem The study of molecules in solution with quantum methods is a difficult task because of the large number of molecules and configurations that must be taken into account. The quantum mechanies/molecular mechanics methods proposed to date either require massive computational power or oversimplify the solute quantum description. Versions of this program held in the CPC repository in Mendeley Data ADSF_v1_0; ASEP/MD; 10.1016/S0010-4655(03)00351-5
DOI: 10.6084/m9.figshare.20011282.v1
title: Pollen viability and quantification of pollen grains in species of Physalis

description: ABSTRACT The aim of this study was to develop a culture medium for the evaluation of pollen viability and to determine the number of pollen grains per anther and per flower in species of Physalis. The study was developed sequentially, where pollen grains of Physalis (P. angulata,P. ixocarpa,P. minima,P. peruviana and P. pubescens) underwent germination in a culture medium developed over four phases: checking the concentration of agar and the pH, and the concentrations of sucrose, calcium nitrate and boric acid. For the pollen count, five anthers were collected from five representative specimens of each species, allowed to settle for dehiscence to take place, with lactic acid then being added to improve visualisation of the pollen grains. After 48 hours, the number of pollen grains was quantified with the help of a Neubauer chamber, and the number of pollen grains per anther determined by pre-established formula. All species were seen to have similar behaviour in their requirements for pollen grain germination, the pH of the medium being around 5.4 and the agar concentration 8 g L-1. All species display a dependence on calcium and boron for better pollen viability, especially P. minima, where the addition of boron did not provide any sharp increase in the germination percentage. As for the number of pollen grains, the species can be divided into two groups, with P. angulata,P. peruviana and P. pubescens having the highest number of pollen grains per anther and per flower compared to P. ixocarpa and P. minima.
DOI: 10.15468/dl.77728p
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Observation, Human Observation, Machine Observation, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Criorhina berberina (Fabricius, 1805)"
 ]
}

 The dataset includes 151 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009327-250426092105405/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/3bksddznyg
title: Data Extraction of Nano Silica as a potential filler in nanocomposites from Rice Husk Ash with Ballmill and Coprecipitation Methods

description: This article consists of data from the extraction of nano silica from rice husk ash (RHA) by ball mill and coprecipitation methods. RHA is an agricultural waste that is widely found in Indonesia. The extracted RHA can be used as a filler in nanocomposites. Calcining RHA did silica extraction from rice husk ash at 500oC for 5 hours. After calcining RHA in the Ball Mill for 10 hours with a rotation of 250 rpm. Furthermore, RHA was mixed with 5 M HCl in a ratio of 1:4, stirred, and heated with a Magnetic Stirrer at 70 oC for 4 hours at a speed of 400 rpm. Then mixed again with NH4OH M in a ratio of 1:4, stirred, and heated with a Magnetic Stirrer at a temperature of 70 oC for 4 hours at a speed of 400 rpm. The resulting RHA was further characterized by Scanning Electron Microscope (SEM), Fourier-transform infrared spectroscopy (FTIR), and X-ray diffraction (XRD). The resulting data shows that nano silica from RHA is optimal and can be used as a filler in nanocomposites.
DOI: 10.6084/m9.figshare.7406441.v3
title: Data and supporting R script for: Tissue Tropism and Transmission Ecology Predict Virulence of Human RNA Viruses

description: Ecological trait data for human RNA viruses, supporting R scripts and supporting analytical output values used to generate figures/tables.<br><b>Virulence_data_Brierley_et_al_21_6_19.xlsx: </b>Data file describes known virulence and fatalities, transmission routes, tissue tropisms, and host range for each of 214 human virus species. Data was compiled via structured literature searches following Woolhouse & Brierley (2018). Full data dictionary is provided in-file.<br><b>Brierley_et_al_main_script_23_6_19.R: </b>Supporting R script for classification tree analysis, calling random forest analyses and generating model visualisations.<b><br></b><b>Brierley_et_al_random_forest_23_6_19.R: </b>Supporting R script for conducting random forest analysis and extracting model outputs.<b><br></b><b>Brierley_et_al_fig1_data.csv - </b><b>Brierley_et_al_tableS5_data.xlsx</b><b>: </b>Supporting output value data for respective figures and tables. <i>fig1_data </i>contains counts of viruses by severity rating and taxonomic family. All other data contains values of either performance diagnostics (<i>table1_data, tableS3_data, tableS5_data</i>), variable importances (<i>fig3_data, figS1_data, figS3_data)</i>, or partial dependence (<i>fig4_data, figS2_data, figS4_data)</i> extracted from random forest models using 200 training/test partitions. Sheet tab titles in Excel files denote data subset or virulence definition used.<br><br>
DOI: 10.17632/7d7n2kv7kr
title: impact of Allopurinol use on one-year outcome of patients with acute  anterior myocardial infarction undergoing PPCI

description: In this clinical trial (IRCT20140512017666N2), 170 patients with anterior STEMI at Shahid Madani Hospital in Tabriz undergoing successful primary angioplasty within 12 hours of 
 the onset of symptoms were included in the study. Patients were randomly divided into two groups of 85 patients receiving allopurinol (intervention group) and receiving the standard protocol (control group). The intervention group received 300 mg of allopurinol before angioplasty and then 100 mg daily for one month after angioplasty. The two groups were then evaluated for in-hospital MACE and followed up for one year for clinical outcomes. Clinical outcomes studied included mortality, stroke, and heart failure. Telephone calls were made to patients in 1-6-12 months.
The results of the present study showed that allopurinol administration had no effect on the clinical outcome and one-year complications of patients with STEMI who underwent primary angioplasty.
DOI: 10.6084/m9.figshare.27268032.v1
title: Questionnaire and interview guide

description: questionnaire and interview guide
DOI: 10.6084/m9.figshare.28391357.v1
title: Phenotypic and genotypic (PACE) data of the validation panel

description: Genotypic data were determined with PACE assay followed by analysis with FitTetra. Values from the "geno" coloumn of the FitTetra file is shown here, together with score data for phenotypic traits.
DOI: 10.17632/2w656ppw8f
title: Universal Basic Income Literature Dataset (1996-2019)

description: The universal basic income research & publication dataset, which was indexed by Scopus from 1996 to 2019. The dataset contains data authors, authors ID Scopus, title, year, source title, volume, issue, article number in Scopus, DOI, link, affiliation, abstract, index keywords, references, Correspondence Address, editors, publisher, conference name, conference date, conference code, ISSN, language, document type, access type, and EID.
DOI: 10.17632/6z78x3fds9
title: The SARS-CoV-2 Subgenome Landscape and its Novel Regulatory Features. Wang et al. Source Data

description: Unprocessed data for Fig S1, Fig 4D, and Fig 5B.
DOI: 10.17632/x4wz7fbvdg
title: Data for: Insight into the Catalytic Mechanism of NO Oxidation and the Role of NO2 in Fast Selective Catalytic Reduction DeNOx at Low-Temperature over MnOx/TiO2 Catalyst

description: The calculation details of the proposed surface states including the optimized results, ZPE correction and TS script for calculating Gibbs free energy.
DOI: 10.6084/m9.figshare.17841215.v1
title: phishing_url

description: The phishing url dataset contains synthetic data of urls - some regular and some used for phishing.<br>The dataset is based on the project (https://github.com/Rohith-2/url_classification_dl) by Rohith Ramakrishnan (https://www.linkedin.com/in/rohith-ramakrishnan-54094a1a0/) and others, accompanied by a blog post (https://medium.com/nerd-for-tech/url-feature-engineering-and-classification-66c0512fb34d&gt;). <br>The dataset is released under Creative Commons Zero v1.0 Universal (CC0 1.0).
DOI: 10.17632/kfn9g29n6d
title: data for "Integration of clinical and multi-omics multiple sclerosis data into a predictive algorithm of disease activity to accelerate personalized medicine" (GR-2016-02363997)

description: Data refer to the results obtained within the GR-2016-02363997 project funded by the Italian Ministry of Health. Main aim was to combine clinical data with genetic variants, transcriptomic and T lymphocyte repertoires signatures to dissect the biological basis of multiple sclerosis (MS) inflammatory activity.
Two sets of patients were analysed: i) Extended cohort, for the identification of genetic biomarkers, ii) Core Cohort, for the identification of genetic, transcriptomic and immune repertoires biomarkers. Each patient was classified according to the NEDA (No Evidence of Disease Activity) criterion at 4- year follow-up, while time to first relapse (TTFR) was considered as secondary outcome.
Data includes:

-	Results: GR-2016-02363997_results.pdf
-	uploaded documents.pdf
-	Genetic data: GEN_top_SNPs_geno.ped; GEN_top_SNPs_geno.map; GEN_var.txt; GEN_gene-wise.txt 
-	Transcriptomic data: EXPR_topRNA_CPM.txt; EXPR_var.txt 
-	Immunosequencing data: IMMSEQ_diversity.txt; IMMSEQ_trbd.txt; IMMSEQ_trbj.txt; IMMSEQ_trbv.txt; IMMSEQ_var.txt
DOI: 10.17632/3nbssh44yn
title: The DEPOSIT computer code based on the low rank approximations

description: This program has been imported from the CPC Program Library held at Queen's University Belfast (1969-2018) Abstract We present a new version of the DEPOSIT computer code based on the low rank approximations. This approach is based on the two dimensional cross decomposition of matrices and separated representations of analytical functions. The cross algorithm is available in the distributed package and can be used independently. All integration routines related to the computation of the deposited energy T ( b ) are implemented in a new way (low rank separated representation format on homogeneous meshes). By... Title of program: DEPOSIT 2014 Catalogue Id: AENP_v2_0 Nature of problem For a given impact parameter b to calculate the deposited energy T(b) as a 3D integral over a coordinate space, and ionization probabilities P m (b). For a given energy of the projectile to calculate the total and m-fold electron-loss cross sections using T(b) values on the whole b-mesh. Versions of this program held in the CPC repository in Mendeley Data AENP_v1_0; DEPOSIT; 10.1016/j.cpc.2012.09.028 AENP_v2_0; DEPOSIT 2014; 10.1016/j.cpc.2014.06.012