cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.1j6b0/6
title: Several modifier loci, partial asex

description: Simulation program: several biallelic mutation modifier loci, partial clonality
DOI: 10.5061/dryad.1r875/1
title: Invertebrate community response variables
DOI: 10.5061/dryad.2br8k/1
title: Northern Forest Clearing Microclimate Data

description: Detailed microclimate data at the Northern Forest Clearing site at the University of Michigan Biological Station in Pellston, Michigan, USA.
DOI: 10.5061/dryad.2br8k/2
title: Southern Old Agriculture Field Microclimate Data

description: Detailed microclimate data at the Southern Old Agriculture Field site at the Kellogg Biological Station in Hickory Corners, Michigan, USA.
DOI: 10.5061/dryad.2br8k/3
title: Northern Forest Clearing Pendant Data

description: Hourly temperature data at 1 meter height taken in warmed plots at the Northern Forest Clearing site at the University of Michigan Biological Station in Pellston, Michigan, USA.
DOI: 10.5061/dryad.2br8k/4
title: Southern Old Agriculture Field Pendant Data

description: Hourly temperature data at 1 meter height taken in warmed plots at the southern old agriculture field site at the Kellogg Biological Station in Hickory Corners, Michigan, USA.
DOI: 10.5061/dryad.2br8k/5
title: README

description: Includes a  list of all data files, a description of the variables, and contact information.
DOI: 10.5061/dryad.2h023/1
title: qPCR eDNA data used to generate ROC curves

description: qPCR results for environmental water samples tested for the presence of eDNA from redside dace (Clinostomus elongatus).  Columns show field codes for environmental samples, triplicate qPCR results for estimated copy number, as well as mean and standard deviation across replicates, and threshold cycle (Ct) for each result. Additional columns show sampling season (spring / fall) and TaqMan chemistry (Fast / Environmental qPCR master mix)
DOI: 10.5061/dryad.394hm/15
title: equalLengths

description: body lengths from equal trees
DOI: 10.5061/dryad.394hm/16
title: mblLengths

description: body lengths from mbl trees
DOI: 10.5061/dryad.394hm/17
title: Puttick_et_al_2017_SupplementaryInformation
DOI: 10.5061/dryad.394hm/3
title: fullTree_noBL

description: Undated, unresolved, full phylogeny used as input for dating trees using different methods
DOI: 10.5061/dryad.397vm/1
title: Terborgh.et.al.2017.Foranging.impacts.Asian.megafauna

description: This file contains data for Terborgh et al. 2017. Foraging impacts of Asian megafauna on tropical rain forest structure and biodiversity. The data is divided in two spreadsheets – one for data from the 20x5 plots (saplings and adults) and one of the 1x1 plots (seedlings and small plants).
DOI: 10.5061/dryad.3rj81/1
title: Data of first-order root trait in eastern China

description: The data file contains six first-order root traits, including root diameter (RD), specific root length (SRL), root tissue density (RTD), root carbon and nitrogen concentration (RC and RN) and C:N ratio, of 181 plant species from eight subtropical and boreal forests in eastern China.
DOI: 10.5061/dryad.4s3v1/1
title: Cybertype_Zasphinctus obamai_CASENT0764125_holotype worker_1

description: Cybertype dataset for Zasphinctus obamai (CASENT0764125) holotype worker 1: complete micro-CT scanning raw dataset of full body (DICOM format, 993 slices)
DOI: 10.5061/dryad.51sm0/1
title: Data from: A comparison of individual-based genetic distance metrics for landscape genetics

description: Files include CDPOP inputs and outputs, R code for evaluating genetic distance metrics using CDPOP simulations, pairwise genetic and landscape distance matrices for all individuals in each simulation scenario, and resistance surfaces used to control mating and dispersal probabilities in the simulations.
DOI: 10.5061/dryad.55bp8/40
title: Diffusion_Coefficients_Filtered

description: The cross-stream diffusivity in the Southern Ocean (75S to 30S) for the period 2005 to 2015. The diffusion coefficients are calculated using the theory of Ferrari and Nikurashin (2010). The dataset includes the suppressed and unsupressed diffusivities, as well as the supression factor (the ratio of the unsuppressed and suppressed diffusivity)
DOI: 10.5061/dryad.5kv17/1
title: Morimotoetal2016-gutmicrobiota-Behaviouraldata

description: Behavioural data of the manipulation of the gut bacteria on mating and reproductive parameters. Tab 2 contains the data for the offspring body mass.
DOI: 10.5061/dryad.62fj4/1
title: Aladraco_localities_Wildenstein_slice

description: Sample localities of Aladraco schloppensis in Tannenknock Formation, Franconian Forest Region, Germany
DOI: 10.5061/dryad.62fj4/2
title: Aladraco_schloppensis_Localities_Wildenstein

description: Table of sample localities of Aladraco schloppensis from Tannenknock Formation, Wildenstein slice, Franconian Forest Region, Germany
DOI: 10.5061/dryad.65t4k/2
title: Red Knot VHF tracking data

description: Please read the README file for details.
DOI: 10.5061/dryad.6m5k3/1
title: Why does inbreeding reduce paternity? Effects on sexually selected traits

description: This is the data associated with the manuscript "Why does inbreeding reduce paternity? Effects on sexually selected traits". The data file contains 5 worksheets. The first "association data" contains data from experiment 1 of the associated paper looking at female association time with inbred and outbred males. The second third and fourth contain data associated with the second experiment of the associated paper looking at the affect of inbreeding status on male sperm traits. The fifth, "Paternity" contains the data from the third experiment in the associated paper looking at how inbreeding status affect share of paternity.
DOI: 10.5061/dryad.70r09/1
title: AOE_Mt-K101-22contigs

description: Mitochondrial contigs of Anacardium occidentale (Cashew) assembled by Velvet assembler with a 101 kmer size.
DOI: 10.5061/dryad.761tj/1
title: Observed and modeled presence 1968-2014

description: NMFS Trawl Survey data used to fit species distribution models and the resulting modeled predictions for presence/absence (preds1) and abundance (preds).
DOI: 10.5061/dryad.761tj/2
title: Projected species probability of occupancy and abundance under ocean warming

description: Predicted probability of occupancy (preds1) and abundance (preds) under a doubling of carbon dioxide using simulations from GFDL 2.6.
DOI: 10.5061/dryad.7g877/23
title: Lassa virus NP strains isolated from rodents used for gammaMap analyses.
DOI: 10.5061/dryad.7nt8f/23
title: SeqCap_16.zip
DOI: 10.5061/dryad.7nt8f/24
title: SeqCap_17.zip
DOI: 10.5061/dryad.7nt8f/25
title: SeqCap_18.zip
DOI: 10.5061/dryad.7nt8f/26
title: SeqCap_19.zip
DOI: 10.5061/dryad.7nt8f/27
title: SeqCap_20.zip
DOI: 10.5061/dryad.7nt8f/28
title: Four reference samples for exome capture and SNP calling_1.zip
DOI: 10.5061/dryad.7nt8f/29
title: Four reference samples for exome capture and SNP calling_2.zip
DOI: 10.5061/dryad.7nt8f/30
title: Four reference samples for exome capture and SNP calling_3.zip
DOI: 10.5061/dryad.7nt8f/31
title: Four reference samples for exome capture and SNP calling_4.zip
DOI: 10.5061/dryad.83gp7/2
title: Boothe_et_al_eLife_2017_Figure_4b_Source_Data
DOI: 10.5061/dryad.83gp7/4
title: Boothe_et_al_eLife_2017_Figure_4_Figure_Supplement_1_Source_Data
DOI: 10.5061/dryad.83gp7/5
title: Boothe_et_al_eLife_2017_Figure_4a_Source_Data
DOI: 10.5061/dryad.854j2/2
title: dataset_L

description: Velocity trajectories and segmentation annotation.
DOI: 10.5061/dryad.854j2/3
title: dataset_A

description: Velocity trajectories and segmentation annotation.
DOI: 10.5061/dryad.8br13/1
title: Experimental data on growth, mortality, elemental composition and stable isotope composition

description: Individual data on survival, growth, %C, %N, C:N, d13C and d15N in Neomysis integer fed Artemia in different amounts.
DOI: 10.5061/dryad.93351/1
title: Sexual selection on male gambusia holbrooki in different environments

description: This data file contains the raw data analysed in the associated paper. It contains two worksheets. The first - Sexual selection on males contains the data used in the analysis described under the same subheading in the associated paper.The second - Number of sires per brood contains  the data used in the analysis described under this subheading in the associated paper. Column descriptors are provided in each worksheet
DOI: 10.5061/dryad.c197n/1
title: Genepop file for northern lineage of Hydromantes

description: Genotypes for 10 microsatellite loci for 136 individuals of Hydromantes platycephalus and H. brunus from 12 localities in northern Sierra Nevada, California in Genepop format. This file was generated using the program GeneMapper, which was also used to call genotypes. The program Genepop V4 was used to calculate Fst between populations as well as genetic diversity statistics for each population.
DOI: 10.5061/dryad.c197n/2
title: Genepop file for southern lineage of Hydromantes

description: Genotypes for 10 microsatellite loci for 122 individuals from 9 localities of Hydromantes platycephalus from the southern Sierra Nevada, California in Genepop format. This file was generated using the program GeneMapper, which was also used to call genotypes. The program Genepop V4 was used to calculate Fst between populations as well as genetic diversity statistics for each population.
DOI: 10.5061/dryad.c197n/3
title: Northern lineage Hydromantes STRUCTURE file

description: STRUCTURE input file for genotypes of 10 microsatellite loci for 136 individuals of Hydromantes from 12 localities in the northern Sierra Nevada, California, USA. This file was generated using the Genepop file of genotypes (Hydro_genotypes_GENEPOP_HbHpN.txt) in the program STRUCTURE, which was also used to analyze the data at K values of 2, 3, and 6 in order to determine the level of population structure. Data were summarized in CLUMPP and visualized using DISTRUCT.
DOI: 10.5061/dryad.c197n/4
title: Structure file for southern lineage of Hydromantes

description: STRUCTURE input file for genotypes of 10 microsatellite loci for 122 individuals of Hydromantes from 9 localities in the northern Sierra Nevada, California, USA. This file was generated using the Genepop file of genotypes (Hydro_genotypes_GENEPOP_HbHpN.txt) in the program STRUCTURE, which was also used to analyze the data at K values of 6 in order to determine the level of population structure. Data were summarized in CLUMPP and visualized using DISTRUCT.
DOI: 10.5061/dryad.ch05n/1
title: Dennis_et_al_Evolution2017

description: This folder contains 5 separate data files, and separate README files describing the contents of each file.
DOI: 10.5061/dryad.ck2br/1
title: GPU_AIDW

description: Supplementary Implementation Details, Source code, and Sample test data of a GPU-accelerated Adaptive Inverse Distance Weighting (AIDW) interpolation algorithm.

The original research paper is entitled:
Accelerating Adaptive IDW Interpolation Algorithm on a Single GPU
URL: http://arxiv.org/abs/1511.02186
DOI: 10.5061/dryad.g1hm0/1
title: Data Dryad

description: Excel file containing:(1) identification of Botrytis cinerea strains (columns A to H), (2) microsatellite profile for 8 SSRs (colums I to P), (3) status of resistance for 7 loci (columns Q to W)
DOI: 10.5061/dryad.g88r7/1
title: Activity

description: Contains activity (as sum of motion counts) and predictors used in this study. Data can be subset by season and activity interval as necessary. Metadata can be found in the README.txt file.
DOI: 10.5061/dryad.g88r7/2
title: Rest site selection

description: Contains levels of thermal and security resources at rest sites used by pygmy rabbits and associated available sites. Data can be subset by season as necessary. Metadata can be found in the README.txt file.
DOI: 10.5061/dryad.g9s1d/1
title: Historic of detections of wolves per site per year

description: The rows of this matrix are the 3547 sites and the 23 columns are the 23 years from 1994 to 2016. For each line a 0 means that no detection occured and a 1 means that a detection occured.
DOI: 10.5061/dryad.h5q34/1
title: Dataset_06_08_2017

description: There are five spreadsheets in this excel file. The spreadsheets "Microcosm soil A”, “Microcosm soil B” and “Environmental gradient" contain the raw data used in this paper. The spreadsheets "Microcosm metadata” and “Env. gradient metadata" contain the associated metadata, where a description of all the variables and units can be found.
DOI: 10.5061/dryad.p6882/1
title: Multiclass Infectious Disease Biomarker Data

description: This data set consists of 331 rows and 126016 columns in a tab delimited text file.  Each row corresponds to a different sample.  The first 7 columns correspond to the sample meta data.  Donor disease is provided in the second column and consist of 84 Chag (Chagas), 88 HBV (Hepatitis B), 71 HCV (Hepatitis C) and 88 WNV (West Nile virus).  The third column provides the donors' age, the fourth the donors' sex.  There are 62 females (F) and 1102 Males in this data set. The fifth column provides the date the sample was drawn in YYYY-MM-DD format, and the 6th any available ethnicity information.  The final meta data column is "process.lock" which is an indicator of what process was used to create this particular set of arrays.  The remaining 126009 correspond to the raw intensities associated with the peptide sequence that defines that column name.
DOI: 10.5061/dryad.p6882/2
title: Binary Classification Disease Biomarker Data

description: This data set consists of 903 rows and 126018 columns in a tab delimited text file. The first 9 columns correspond to the sample meta data. The first column, sample, corresponds to a given donor. The second column, analysis_set, identifies the cohort as testing or training.  The third column, process_lock,is an indicator of what process was used to create this particular set of arrays. The fourth column, Ab2, is the secondary antibody either Anti-IgA or Anti-IgG. The fifth column is diagnostic class either healthy or chagas. The sixth column,med_SCO, is the median ELISA S/CO values.  The seventh column is the donors' age. The eigth column the donors' Gender listed as F (Female), M (Male), or U (Unknown). The 9th column, Ethnicity, provides any ethnicity information associated with the donor. The remaining 126009 correspond to the raw intensities associated with the peptide sequence that defines that column name.
DOI: 10.5061/dryad.r578p/1
title: RTI_dataset_RI428

description: This file contains five *.rti files of the specimen MNHN RI 428 of Donrussellia provincialis in different orientation views (dorsal, lateral, medial, plantar and posterior).

This specimen has been described and analyzed in the associated paper "Postcrania of the most primitive euprimate and implications for primate origins". This right talus is the first discovery of non-dental skeletal material of Donrussellia provincialis, the most primitive fossil species belonging to the order Euprimates at present time.

These RTI files enable a visualisation of the specimen in a high resolution photographic quality, for five orientations, with interactive re-lighting capturing surface, shape and color.
DOI: 10.5061/dryad.s2743/4
title: N. menapia GE Fastq Files

description: Individual fastq files for Goat Mountain Early sample of N. menapia.
DOI: 10.5061/dryad.s2743/5
title: N. menapia LA Fastq Files

description: Individual fastq files for Lang sample of N. menapia.
DOI: 10.5061/dryad.s2743/6
title: N. menapia ML Fastq files

description: Individual fastq files for Mendocino Pass late sample of N. menapia.
DOI: 10.5061/dryad.s2743/7
title: N. menapia ME Fastq files

description: Individual fastq files for Mendocino Pass early sample of N. menapia.
DOI: 10.5061/dryad.s2743/8
title: N. menapia OR fastq files

description: Individual fastq files for Oregon sample of N. menapia.
DOI: 10.5061/dryad.s2743/9
title: N. menapia WO Fastq files

description: Individual fastq files for Woodfords sample of N. menapia.
DOI: 10.5061/dryad.s5b40/1
title: Reads from run 163 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/2
title: Reads from run 245 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/3
title: Reads from run 329-1 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/4
title: Reads from run 329-2 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/5
title: Reads from run 329-3 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/6
title: Reads from run 329-4 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/7
title: Reads from run Trent-1 of Gulo gulo MHC DRB exon 2 fragment
DOI: 10.5061/dryad.s5b40/8
title: List of individuals and MID tags for Gulo gulo MHC DRB exon 2 sequencing reads
DOI: 10.5061/dryad.v2g5n/1
title: Fossette_Whale_Environment_Data_2017

description: Monthly values of environmental variables and whale densities used in the manuscript.
DOI: 10.5061/dryad.v4012/1
title: Data series

description: This excel file contains all the raw data from the manuscript. Each sheet is named with the figure number to which its data belong. The column headings indicate the figure panel to which the data belong, and below, the variables.
DOI: 10.5061/dryad.1r875/2
title: Functional response variables
DOI: 10.5061/dryad.1r875/3
title: Water quality parameters
DOI: 10.5061/dryad.1r875/4
title: Nutrient concentration
DOI: 10.5061/dryad.4f0bh/1
title: Images and source code for the publication.

description: The archive contains all the images and the source code used for the analysis in the referenced publication. It also contains the obtained equality tables, such that the whole comparison does not need to be run again. Moreover, code for analyzing the results is provided. Refer to the contained readme.html file for more detailed information.
DOI: 10.5061/dryad.4m35m/1
title: Bayesian_analyses

description: nex and tree files for Bayesian phylogenetic analyses of trnL-F and ITS 1+2
DOI: 10.5061/dryad.4m35m/2
title: ML_analyses

description: RAxML-GUI tree files
DOI: 10.5061/dryad.4pb81/1
title: data for accumulation of Op with respect to time

description: Data for Neill et al.
DOI: 10.5061/dryad.4s3v1/10
title: Cybertype_Zasphinctus sarowiwai_CASENT0764654_holotype worker_3

description: Cybertype dataset for Zasphinctus sarowiwai (CASENT0764654) holotype worker 3: complete micro-CT scanning raw dataset of mesosoma (DICOM format, 993 slices)
DOI: 10.5061/dryad.4s3v1/2
title: Cybertype_Zasphinctus obamai_CASENT0764125_holotype worker_2

description: Cybertype dataset for Zasphinctus obamai (CASENT0764125) holotype worker 2: 3D PDF and high-resolution 3D rotation video (mpg format) of scan of full body plus montage photos (full-face view, body in profile, and dorsal view of body in tiff format)
DOI: 10.5061/dryad.4s3v1/3
title: Cybertype_Zasphinctus obamai_CASENT0764127_paratype worker_1

description: Cybertype dataset for Zasphinctus obamai (CASENT0764127) paratype worker 1: complete micro-CT scanning raw dataset of head (DICOM format, 990 slices)
DOI: 10.5061/dryad.4s3v1/4
title: Cybertype_Zasphinctus obamai_CASENT0764127_paratype worker_2

description: Cybertype dataset for Zasphinctus obamai (CASENT0764127) paratype worker 2: complete micro-CT scanning raw dataset of mesosoma (DICOM format, 993 slices)
DOI: 10.5061/dryad.4s3v1/5
title: Cybertype_Zasphinctus obamai_CASENT0764127_paratype worker_3

description: Cybertype dataset for Zasphinctus obamai (CASENT0764127) paratype worker 3: complete micro-CT scanning raw dataset of metasoma (DICOM format, 993 slices)
DOI: 10.5061/dryad.4s3v1/6
title: Cybertype_Zasphinctus obamai_CASENT0764127_paratype worker_4

description: Cybertype dataset for Zasphinctus obamai (CASENT0764127) paratype worker 4: 3D PDFs and high-resolution 3D rotation videos (mpg format) for scans of head, mesosoma, and metasoma plus microtomographic still images of diagnostic characters (tiff format)
DOI: 10.5061/dryad.4s3v1/7
title: Cybertype_Zasphinctus sarowiwai_CASENT0764650_paratype worker_1

description: Cybertype dataset for Zasphinctus sarowiwai (CASENT0764650) paratype worker 1: complete micro-CT scanning raw dataset of full body (DICOM format, 993 slices)
DOI: 10.5061/dryad.4s3v1/8
title: Cybertype_Zasphinctus sarowiwai_CASENT0764654_holotype worker_1

description: Cybertype dataset for Zasphinctus sarowiwai (CASENT0764654) holotype worker 1: complete micro-CT scanning raw dataset of full body (DICOM format, 993 slices)
DOI: 10.5061/dryad.4s3v1/9
title: Cybertype_Zasphinctus sarowiwai_CASENT0764654_holotype worker_2

description: Cybertype dataset for Zasphinctus sarowiwai (CASENT0764654) holotype worker 2: complete micro-CT scanning raw dataset of head (DICOM format, 992 slices)
DOI: 10.5061/dryad.537k1/1
title: FE-Zhang-ST1

description: Synthesized dataset of shrub encroachment on soil C and N pool, containing informaiton of mean annual rainfall, legumes status, woody species, sites and soil (organic carbon and nitrogen) variables at the site scales for grasslands with and without shrubs.
DOI: 10.5061/dryad.53jb9/1
title: Hanot_et_al_PC_scores

description: PC scores used in the shape covariation analyses. In capital letters: the couple in which the concerned bone (in lower case) is included (scap : scapula ; hum : humerus ; rad : radius-ulna ; mtc : metacarpal bone ; pa1 : proximal anterior phalanx ; pa2 : middle anterior phalanx ; pa3 : distal anterior phalanx ; cox: coxal bone; fem: femur; tib: tibia; tal: talus; cal: calcaneus; mtt: metatarsal bone; pp1 : proximal posterior phalanx ; pp2 : middle posterior phalanx ; pp3 : distal posterior phalanx)
DOI: 10.5061/dryad.5n882/1
title: Stacks catalog (m=3, M=2, n=3)

description: Stacks catalog for the main assembly (m=3, M=2, n=3)
DOI: 10.5061/dryad.5n882/2
title: SNP calls

description: SNP calls from main assembly in Stacks
DOI: 10.5061/dryad.5n882/3
title: 2013 STRUCTURE file

description: STRUCTURE input file for 2013 dataset
DOI: 10.5061/dryad.5n882/4
title: 2014 STRUCTURE file

description: STRUCTURE input file for 2014 dataset
DOI: 10.5061/dryad.5n882/5
title: Sesoko STRUCTURE file

description: STRUCTURE input file for Sesoko dataset
DOI: 10.5061/dryad.5p2v8/1
title: Color change

description: Spectral reflectance data for caterpillars from different populations raised under a range of temperatures.
DOI: 10.5061/dryad.5p2v8/2
title: Refuge seeking behavior

description: Data from experiments on variation in the body temperature threshold for refuge-seeking behavior in Battus philenor caterpillars from across their range.
DOI: 10.5061/dryad.6jq11/1
title: Phillips et al CAD DRYAD

description: Alignment of the CAD sequence locus. Used for phylogenetic analysis
DOI: 10.5061/dryad.6jq11/2
title: Phillips et al COI DRYAD

description: Alignment of the COI sequence locus. Used for DNA barcoding analysis of thynnine wasps
DOI: 10.5061/dryad.6jq11/3
title: Phillips et al Rhodopsin DRYAD

description: Alignment of the LW Rhodopsin sequence locus. Used in phylogenetic analysis of thynnine wasps
DOI: 10.5061/dryad.6jq11/4
title: Phillips et al RNA pol2 DRYAD

description: DNA sequence alignment of the RNA poly2 sequence locus. Used in phylogenetic analysis of thynnine wasps
DOI: 10.5061/dryad.6jq11/5
title: Phillips et al Wingless DRYAD

description: DNA sequence alignment of the Wingless sequence locus. Used in phylogenetic analysis of thynnine wasps
DOI: 10.5061/dryad.7nt8f/32
title: Four reference samples for exome capture and SNP calling_5.zip
DOI: 10.5061/dryad.7nt8f/33
title: Four reference samples for exome capture and SNP calling_6.zip
DOI: 10.5061/dryad.7nt8f/42
title: README_Description of original rna-seq and exome capture sequence data files
DOI: 10.5061/dryad.7nt8f/43
title: Table S1. Locality information from the Danube River hybrid zone