cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/6kd7bvyt4j.2
title: Analysis of Fatty Acid Composition, Amino Acid Content, and Mineral Composition in Extracted Catfish Oil (Pangasius hypopthalmus)

description: Fish oil contains several fatty acids that are beneficial for health. This data describes the general results of making oil, and provides an analysis of the fatty acid profile, amino acid and mineral content found in catfish (Pangasius hypopthalmus) oil.
DOI: 10.17632/6kd7bvyt4j.3
title: Analysis of Fatty Acid Composition, Amino Acid Content, and Mineral Composition in Extracted Catfish Oil (Pangasius hypopthalmus)

description: Fish oil contains several fatty acids that are beneficial for health. This data describes the general results of making oil, and provides an analysis of the fatty acid profile, amino acid and mineral content found in catfish (Pangasius hypopthalmus) oil.
DOI: 10.17632/6kd7bvyt4j.1
title: 1. Chemical Data of catfish oil (Pangasius hypopthalmus)

description: This data shows the characteristics of catfish (pangasius hypopthalmus) oil, a general description of the yield of catfish oil extract, area profiling data from GC-FID chromatography results and the results of the average percentage of the fatty acid profile of catfish oil
DOI: 10.17632/4fp9s6snxx.1
title: LINF_240025500

description: Inositol-tetrakisphosphate 1-kinase; Leishmania infantum (strain JPCM5)
DOI: 10.17632/wb7mddr8sm.3
title: Thallium isotope cycling in a ferruginous Precambrian ocean analogue

description: Data associated with a manuscript published in Geochimica et Cosmochimica Acta.
DOI: 10.17632/fpwthrz9ry.1
title: Erosional control of the inorganic carbon budget from chemical weathering in a high-relief headwater region, East Qinghai-Tibet Plateau

description: This dataset contains all the data used in the research article 'Erosional control of the inorganic carbon budget from chemical weathering in a high-relief headwater region, East Qinghai-Tibet Plateau'.
DOI: 10.17632/tx4v8y9bmj.1
title: Data for Reaction pathway, mechanism and kinetics of thermochemical sulfate reduction: insights from in situ Raman spectroscopic observations at elevated temperatures and pressures

description: Raman spectra of all reaction systems and calculated peak area ratio between the TSR-involved species and N2. The simulation result of tonnages of Zn precipitated from ore-forming fluid is also contained in the files.
DOI: 10.17632/tx4v8y9bmj.3
title: Data for Reaction pathway, mechanism and kinetics of thermochemical sulfate reduction: insights from in situ Raman spectroscopic observations at elevated temperatures and pressures

description: Raman spectra of all reaction systems and calculated peak area ratio between the TSR-involved species and N2. The simulation result of tonnages of Zn precipitated from ore-forming fluid is also contained in the files.
DOI: 10.17632/tx4v8y9bmj.5
title: Data for Reaction pathway, mechanism and kinetics of thermochemical sulfate reduction: insights from in situ Raman spectroscopic observations at elevated temperatures and pressures

description: Raman spectra of all reaction systems and calculated peak area ratio between the TSR-involved species and N2. The simulation result of tonnages of Zn precipitated from ore-forming fluid is also contained in the files.
DOI: 10.17632/tx4v8y9bmj.2
title: Data for Reaction pathway, mechanism and kinetics of thermochemical sulfate reduction: insights from in situ Raman spectroscopic observations at elevated temperatures and pressures

description: Raman spectra of all reaction systems and calculated peak area ratio between the TSR-involved species and N2. The simulation result of tonnages of Zn precipitated from ore-forming fluid is also contained in the files.
DOI: 10.17632/sct2j6rzr5.2
title: Data set for lattice Boltzmann modelling of capillarity, adsorption and fluid retention in simple geometries: do capillary and film water have equal matric suction or not?

description: This data set includes the raw data of test cases, postprocessing method and final results for the numerical simulations presented in the article, entitled “Lattice Boltzmann modelling of capillarity, adsorption and fluid retention in simple geometries: do capillary and film water have equal matric suction or not?” and drafted by Zi Li et al. in 2024.
DOI: 10.17632/tck7k5257y.1
title: Mixed mode fracture resistance data set from DCB-UBM experiments

description: The present repository contains an extensive data set of mixed-mode fracture resistance curves extracted from a series of 45 double cantilever beams under uneven bending moment experiments. Further details on how to use the raw data to recreate the results will be provided in a data-in-brief publication.
DOI: 10.17632/vjygzcz5rv.1
title: LINF_250009900

description: Kringle domain containing protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/hj2923x8gh.1
title: LINF_250010800

description: DnaJ domain-containing protein | JDP77 | J77; Leishmania infantum (strain JPCM5)
DOI: 10.17632/s5fkpfm29b.1
title: LINF_240028700

description: Delta9-fatty-acid desaturase | Δ9-FADS; Leishmania infantum (strain JPCM5)
DOI: 10.17632/pmkp9s9pyt.1
title: LINF_240028400

description: ClpA/ClpB family | Torsin-like; Leishmania infantum (strain JPCM5)
DOI: 10.17632/5smdsr33hy.1
title: LINF_250016400

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/spwt5f9rfr.1
title: LINF_250015900

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/t6vfxmddpf.1
title: Exploring advanced phycoremediation strategies for nutrient recovery from secondary wastewater sources using a largescale membrane photobioreactor system-Datasets and supplementary material.

description: Aim of the study was to use a microalgae-based membrane photobioreactor system (1000L) in a greenhouse for continuously treating a secondary wastewater using green microalgae Desmodesmus sp. isolated from a sewage plant in Germany, during summer and winter to get a comprehensive understanding of the underlying tendencies and optimisations necessary for unhindered yearlong operations. Maintaining the photobioreactors at lower cell concentrations during times of light inhibition seem to benefit the nutrient uptake rates. Cell mass recycling has been shown to be an effective strategy in enhancing algae-based wastewater treatment; especially during strong light availability. Compared to regular continuous cultivation operations, using cell recycling and higher dilution rates during light availability and using lower cell concentrations and dilution rates during light inhibition, the overall biomass productivity was boosted by 80% and 10 % during summer and winter respectively, while N/P removal rates were improved by 23% in winter and remained unchanged in summer.
DOI: 10.17632/tb26zy2jst.1
title: Vegetation-Density Drone Dataset For Peatland Vegetation Classification

description: Vegetation Density of Peatland Drone dataset consists of 3 density classes namely bare, softly grazed and heavily grazed. The images were taken in The Liang Anggang Protection Forest Block I in Banjarbaru, South Kalimantan, Indonesia. an area of 479 hectares of block 1 area which is filled with land such as agriculture, plantations, roads and settlements and an area of 494 hectares full of weeds. In addition, the location is also categorized as peat land. The location, especially in block 1, fulfils the characteristics and suitability of the need for data collection for land cover classification in terms of the type of vegetation density that can be seen with the human eye during observations and surveys.

Bare/un-grazed typically consists of dry shrubs, soil, water, and settlements, while heavily grazed typically consists of vegetation that has a density between 15 and 30 meters. Meanwhile, softly grazed typically consists of shrubs that are 5 to 6 meters apart and fresh shrubs up to a maximum of 3 meters.

Image capture was carried out from November - December 2021 using DJI Mavic Pro drone.The resolution of the acquired image is 4000 x 3000 pixels totaling 1,529 images, then we resize image (cropping) to 256x256 pixels. The vegetation density classes are as follows,Bare (1000 images), softly grazed (1000 images) and heavily grazed (1000 images)
DOI: 10.17632/mrvrbh8hg6.1
title: Replication data for: Delivery in the City: Differentiated Products Competition among New York Restaurants

description: The code and data required to replicate all exhibits in our paper, "Delivery in the City: Differentiated Products Competition among New York Restaurants," forthcoming in the Journal of Urban Economics. The data consists of 550,000 menus collected over 68 consecutive weeks for New York City restaurants, a dataset of new restaurants hand coded from New York City restaurant inspections data, and select US Census data for the New York metropolitan area. See the README file for detailed instructions on replication; see our paper for details on the dataset. For researchers without access to the Journal of Urban Economics, a page proof copy of the paper is available at https://www.nathanschiff.com/webdocs/my_papers/SchiffCosmanDai_final.pdf.
DOI: 10.17632/rsph6fxnj7.1
title: Replication Package for 'Quantifying the Germany Shock: Structural Labor-Market Reforms and Spillovers in a Currency Union'

description: This replication package includes all sources and code needed to replicate Fadinger, Harald; Herkenhoff, Philipp; Schymik, Jan (2024), “Quantifying the Germany Shock: Structural Labor-Market Reforms and Spillovers in a Currency Union”, Journal of International Economics. See the ReadMe file for further instructions.
DOI: 10.17632/8z29gzf6rd.1
title: Data for Printability Prediction in Projection Two-Photon Lithography via Machine Learning Based Surrogate Modeling of Photopolymerization

description: Data description 
This dataset presents the raw and augmented data that were used to train the machine learning (ML) models for classification of printing outcome in projection two-photon lithography (P-TPL). P-TPL is an additive manufacturing technique for the fabrication of cm-scale complex 3D structures with features smaller than 200 nm. The P-TPL process is further described in this article: “Saha, S. K., Wang, D., Nguyen, V. H., Chang, Y., Oakdale, J. S., and Chen, S.-C., 2019, "Scalable submicrometer additive manufacturing," Science, 366(6461), pp. 105-109.” This specific dataset refers to the case wherein a set of five line features were projected and the printing outcome was classified into three classes: ‘no printing’, ‘printing’, ‘overprinting’. 
 
Each datapoint comprises a set of ten inputs (i.e., attributes) and one output (i.e., target) corresponding to these inputs. The inputs are: optical power (P), polymerization rate constant at the beginning of polymer conversion (kp-0), radical quenching rate constant (kq), termination rate constant at the beginning of polymer conversion (kt-0), number of optical pulses, (N), kp exponential function shape parameter (A), kt exponential function shape parameter (B), quantum yield of photoinitiator (QY), initial photoinitiator concentration (PIo), and the threshold degree of conversion (DOCth). The output variable is ‘Class’ which can take these three values: -1 for the class ‘no printing’, 0 for the class ‘printing’, and 1 for the class ‘overprinting’. 

The raw data (i.e., the non-augmented data) refers to the data generated from finite element simulations of P-TPL. The augmented data was obtained from the raw data by (1) changing the DOCth and re-processing a solved finite element model or (2) by applying physics-based prior process knowledge. For example, it is known that if a given set of parameters failed to print, then decreasing the parameters that are positively correlated with printing (e.g. kp-0, power), while keeping the other parameters constant would also lead to no printing. Here, positive correlation means that individually increasing the input parameter will lead to an increase in the amount of printing. Similarly, increasing the parameters that are negatively correlated with printing (e.g. kq, kt-0), while keeping the other parameters constant would also lead to no printing. The converse is true for those datapoints that resulted in overprinting. 

The 'Raw.csv' file contains the datapoints generated from finite element simulations, the 'Augmented.csv' file contains the datapoints generated via augmentation, and the 'Combined.csv' file contains the datapoints from both files. The ML models were trained on the combined dataset that included both raw and augmented data.
DOI: 10.17632/343nrfcbp4.1
title: Purification of enzymatically active Xrn1 for removal of non-capped mRNAs from in vitro transcription reactions and evaluation of mRNA decapping status in vivo

description: Karolina Drążkowska1,#, Rafał Tomecki2,3,#,*, and Agnieszka Tudek2,*

1Laboratory of Epitranscriptomics, Department of Environmental Microbiology and Biotechnology, Institute of Microbiology, Faculty of Biology, Biological and Chemical Research Centre, University of Warsaw, Poland
2Laboratory of RNA Processing and Decay, Institute of Biochemistry and 
Biophysics, Polish Academy of Sciences, Warsaw, Poland
3Institute of Genetics and Biotechnology, Faculty of Biology, University of Warsaw, Poland

#Karolina Drążkowska and Rafał Tomecki contributed equally to this work

*Correspondence should be addressed to Agnieszka Tudek or Rafał Tomecki

Abstract

The cap is a 7-methylguanosine attached to the first messenger RNA (mRNA) nucleotide with a 5'-5' triphosphate bridge. This conserved eukaryotic modification confers stability to the transcripts and is essential for translation initiation. The specific mechanisms that govern transcript cytoplasmic longevity and translatability were always of substantial interest. Multiple works aimed at modeling mRNA decay mechanism, including the onset of decapping, which is the rate-limiting step of mRNA decay. Additionally, with the recent advances in RNA-based vaccines, the importance of efficient synthesis of fully functional mRNA has increased. Non-capped mRNAs arising during in vitro transcription are highly immunogenic, and multiple approaches were developed to reduce their levels. Efficient and low-cost methods for elimination of non-capped mRNAs in vitro are therefore essential to basic sciences and to pharmaceutical applications. Here, we present a protocol for heterologous expression and purification of catalytically active recombinant Xrn1 from Thermothelomyces (Myceliophthora) thermophilus (Tt_Xrn1). We also describe protocols needed to verify the enzyme quality, and provide an overview of its potential applications.
DOI: 10.17632/57rsr9h4kh.1
title: LDHU3_04.0130

description: GEX1 | Gamete expressed 1; Leishmania donovani (HU3 strain)
DOI: 10.17632/47xdbwd8nk.1
title: Simulation output

description: Output data from the Anylogic simulation model used for training machine learning models in Ashraf, M., Eltawil, A., & Ali, I. (2024). Disruption detection for a cognitive digital supply chain twin using hybrid deep learning. Operational Research, 24(2), 23. https://doi.org/10.1007/s12351-024-00831-y. 

Each file contains relevant replications under a particular scenario. Each file contains the observed daily values for each feature in the form of (timestamp(day), value) pairs. 

The features are: MeanInterarrivalTime, MeanSupplierProcessingTime, MeanManufacturerProcessingTime, MeanDisributorProcessingTime, SupplierUtilizationFactor, ManufacturerUtilizationFactor, DistributorUtilizationFactor, MeanSupplierQueueLength, MeanManufacturerQueueLength, MeanDistributorQueueLength, MeanBacklog, MeanWorkInProcess, MeanLeadTime, MeanFlowTime, MeanWaitingTime, MeanProcessingTime, and DailyOutput. 

For disrupted scenarios, disruption end time stamp as well as disruption impact start and end timestamps are included for each replication.
DOI: 10.17632/7sjzypc7g4.1
title: LDHU3_03.1040

description: Multicopper oxidase; Leishmania donovani (HU3 strain)
DOI: 10.17632/h27hwn3w5m.1
title: The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach (processed flow data)

description: Solidification is directly determined by multi-fields. Visualization of the flow field, the solute content field, as well as the constitutional undercooling field during the solidification of immiscible Al-Bi alloy, was conducted via X-ray radiography and optical flow approach. The related detailed description and analysis as well as the steps to reproduce were referred to in the paper titled “The interplay of flow and solute fields during the solidification of Al-Bi alloy via the X-ray radiography and optical flow approach”.
Here, the solute profile and the optical flow measurements based on the raw radiographs which were recorded during the solidification of immiscible Al-Bi alloy were uploaded, where the unit of the optical flow and solute profile data respectively “m/s” and “× 100 %”. The positive vertical flow velocity (VY) is in the downward direction. The positive horizontal flow velocity (VX) is in the rightward direction.
DOI: 10.17632/6pr74hydmc.1
title: LDHU3_04.0200

description: Protein of unknown function - conserved; Leishmania donovani (HU3 strain)
DOI: 10.17632/vmc6znh66m.1
title: Traffic patterns, more than adjacent land use, influence element content of roadside forbs for insect pollinators

description: Roadsides are targeted for restoration of pollinator-friendly plants. Yet, roads are sources of macronutrient, micronutrient, and heavy metal pollution that may contaminate roadside plants. Adjacent landscape features such as railroads and agriculture provide additional macronutrient and heavy metal pollution that may exacerbate traffic effects. However, we lack perspective on how roads combine with rural landscape features to influence nutrition of roadside plants, which could have implications for pollinator health. We surveyed roadsides across Minnesota USA and measured foliar levels of dietary macronutrients (nitrogen, phosphorous, and potassium), a micronutrient (sodium), and metals (iron, zinc, copper, chromium, nickel, lead, aluminum, and cadmium) in six abundant roadside forb species used by insect pollinators: Asclepias syriaca, Dalea purpurea, Monarda fistulosa, Ratibida pinnata, Solidago spp., and Trifolium pratense. We aimed to determine (1) how road variables (traffic volume and distance from road) combine with adjacent land use (railroad and agriculture) to influence element content of roadside forbs and (2) whether some forb species show consistent differences in their accumulation of potentially toxic heavy metals, which could inform selection of species to plant along roadsides. We found that foliar concentrations of nine elements increased with greater traffic volume (nitrogen, phosphorous, iron, zinc, copper, chromium, nickel, lead, and aluminum), and concentrations of six elements declined with distance from the road (nitrogen, phosphorous, potassium, iron, zinc, and copper). Leaves collected adjacent to railroad had less phosphorous, potassium, iron, nickel, and aluminum than leaves collected from sites not adjacent to railroad. Additionally, leaves collected from sites adjacent to agriculture had lower copper levels than leaves from sites without adjacent agriculture. We found no evidence that forb species along roadsides consistently rank higher than other species in their accumulation of heavy metals. Our results show that traffic alters more elements in roadside plants than does adjacent landscape context, alleviating concerns that landscape features exacerbate pollutant levels in roadside pollinator habitat. However, nutrient contamination of most roadside plants is unlikely to reach toxic levels for insect pollinators. This work is consistent with the positive conservation potential of low to moderate traffic roadsides for pollinators.  This file contains data on leaf and soil chemistry from roadside sites across Minnesota.
DOI: 10.17632/vmc6znh66m.2
title: Traffic patterns, more than adjacent land use, influence element content of roadside forbs for insect pollinators

description: Roadsides are targeted for restoration of pollinator-friendly plants. Yet, roads are sources of macronutrient, micronutrient, and heavy metal pollution that may contaminate roadside plants. Adjacent landscape features such as railroads and agriculture provide additional macronutrient and heavy metal pollution that may exacerbate traffic effects. However, we lack perspective on how roads combine with rural landscape features to influence nutrition of roadside plants, which could have implications for pollinator health. We surveyed roadsides across Minnesota USA and measured foliar levels of dietary macronutrients (nitrogen, phosphorous, and potassium), a micronutrient (sodium), and metals (iron, zinc, copper, chromium, nickel, lead, aluminum, and cadmium) in six abundant roadside forb species used by insect pollinators: Asclepias syriaca, Dalea purpurea, Monarda fistulosa, Ratibida pinnata, Solidago spp., and Trifolium pratense. We aimed to determine (1) how road variables (traffic volume and distance from road) combine with adjacent land use (railroad and agriculture) to influence element content of roadside forbs and (2) whether some forb species show consistent differences in their accumulation of potentially toxic heavy metals, which could inform selection of species to plant along roadsides. We found that foliar concentrations of nine elements increased with greater traffic volume (nitrogen, phosphorous, iron, zinc, copper, chromium, nickel, lead, and aluminum), and concentrations of six elements declined with distance from the road (nitrogen, phosphorous, potassium, iron, zinc, and copper). Leaves collected adjacent to railroad had less phosphorous, potassium, iron, nickel, and aluminum than leaves collected from sites not adjacent to railroad. Additionally, leaves collected from sites adjacent to agriculture had lower copper levels than leaves from sites without adjacent agriculture. We found no evidence that forb species along roadsides consistently rank higher than other species in their accumulation of heavy metals. Our results show that traffic alters more elements in roadside plants than does adjacent landscape context, alleviating concerns that landscape features exacerbate pollutant levels in roadside pollinator habitat. However, nutrient contamination of most roadside plants is unlikely to reach toxic levels for insect pollinators. This work is consistent with the positive conservation potential of low to moderate traffic roadsides for pollinators. This file contains data on leaf and soil chemistry from roadside sites across Minnesota.
DOI: 10.17632/2kjkw962gd.2
title: Dataset on anthropometric measurements of the adult population in Slovakia

description: Table 1 List of 25 anthropometric dimensions and measures that can be used in hygienic and ergonomic practice, especially when designing the optimal spatial arrangement of the workplace and creating an optimal working environment.
Table 2 Database of measured data of selected anthropometric characteristics of the adult population in Slovakia for the years 2003-2023.
Table 3 Summary data of the basic statistical analysis of descriptive statistics for the measured data of anthropometric dimensions in differentiation by gender.
DOI: 10.17632/xs7dnkffkv.2
title: Digital Quantification of RNA from nasopharyngeal exudates of COVID-19 patients obtained with the Nanostring nCounter platform

description: Digital Quantification of RNA from nasopharyngeal exudates of COVID-19 patients obtained with the Nanostring nCounter platform