cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/dcwzz-1a665
title: non_treated_scale6

description: Raw data files of non_treated_scale6
description: <strong>Tilt Series Date:</strong> 2019-11-13</p>
<strong>Data Taken By:</strong> William Nicolas</p>
<strong>Species / Specimen:</strong> Allium cepa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 3°, constant angular increment, dosage: 80.0 eV/Å²,  defocus: -10.0 μm,  magnification: 26000x. </p>
<strong>Microscope:</strong> Caltech Titan Krios</p>
<strong>Acquisition Software:</strong> Serial EM</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
<strong>Purification / Growth Conditions / Treatment:</strong>  Onion peels generated like Kafle et al. 2013, incubated in HEPES >20min until freezing</p>
<strong>Sample Preparation:</strong> Glow-discharged (15mA – 1min) Quantifoil R2/2 NH2 Cu EM grids (EMSdiasum). Plunge freezing was performed with a 60/40 ratio ethane/propane mix and an FEI Vitrobot Mark IV (Thermo Fisher). Humidity was set at 50%, temperature at 20°C. Grids were first manually backblotted for 6 s in order to attach the cell wall peel firmly to the carbon, followed by two autoblottings (front and back) 5 s, maximal blot force (25) and a drain time of 3 s.</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/wnj2019-11-13-6/rawdata/</p>on14-3_lam2_ts3.st,  Tilt Series (Pixel Size 0.33 nm), 1.6 GB  
        
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        on14-3_lam2_ts3.rec,  Tilt Series (Pixel Size 1.32 nm), 359.8 MB  
        
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        on14-3_lam2_ts3.rawtlt,  264.0 B  
        
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        on14-3_lam2_ts3.mrc.mdoc,  18.7 kB  
        
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DOI: 10.15468/dl.93qcpv
title: Occurrence Download

description: A dataset containing 12545 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Pseuderanthemum variabile"
 ]
}

 The dataset includes 12545 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001816-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/h8bbx-5e505
title: unfixed Listeria

description: Raw data files of unfixed Listeria
description: <strong>Tilt Series Date:</strong> 2008-09-08</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Listeria monocytogenes</p>
<strong>Strain:</strong> 10403S</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 2°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-09-08-23/rawdata/</p>Listeria_34k_35.st,  Tilt Series (Pixel Size 0.644 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-09-08-23/rawdata/Listeria_34k_35.st"
        > <i class="download icon"></i> Download </a></p>

        Listeria_34k_35_full.rec,  Reconstruction (Pixel Size 1.288 nm), 943.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ffqee-wx190
title: A22 resistant

description: Raw data files of A22 resistant
description: <strong>Tilt Series Date:</strong> 2008-05-12</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> FEI Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-05-12-6/rawdata/</p>A22res51208bx478s3batch27k2812cts000_5.mrc,  Tilt Series (Pixel Size 0.782 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        A22res51208bx478s3batch27k2812cts000_5_9300X.tif,  8.4 MB  
        
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DOI: 10.22002/nn0t4-1rz72
title: archaeon

description: Raw data files of archaeon
description: <strong>Tilt Series Date:</strong> 2008-05-21</p>
<strong>Data Taken By:</strong> Zhiheng Yu</p>
<strong>Species / Specimen:</strong> Nitrosopumilus maritimus</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-68.0°, 68.0°), step: 2°, constant angular increment, dosage: 120.0 eV/Å²,  defocus: 8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> Raptor</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zyh2008-05-21-4/rawdata/</p>08may21a_stack04.mrc,  Tilt Series (Pixel Size 0.52 nm), 553.7 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        08may21a_stack04_part66_7.rec,  Reconstruction (Pixel Size 1.04 nm), 524.3 MB  
        
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DOI: 10.15468/dl.2kzj7b
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Liocichla ripponi",
 "Country is Chinese Taipei",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001818-250827131500795/datasets/export for details.
DOI: 10.22002/9x0wy-d8s56
title: A22 resistant

description: Raw data files of A22 resistant
description: <strong>Tilt Series Date:</strong> 2008-05-12</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> FEI Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at ps://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-05-12-11/rawdata/</p>A22res51208bx478s4batch27k2812cts000_4.mrc,  Tilt Series (Pixel Size 0.782 nm), 990.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        A22res51208bx478s4batch27k2812cts000_4_9300X.tif,  8.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hmy3b-8ae11
title: Magnetospirillum magneticum

description: Raw data files of Magnetospirillum magneticum
description: <strong>Tilt Series Date:</strong> 2005-05-08</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-08-11/rawdata/</p>spqfnofewt_pos5_005_16um_120e_18K.mrc,  Tilt Series (Pixel Size 0.0 nm), 688.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        spqfnofewt_pos6_005_16um_120e_18K.mrc,  Tilt Series (Pixel Size 0.0 nm), 688.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.dqzw3x
title: Occurrence Download

description: A dataset containing 87524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Acmispon glaber, Ambrosia psilostachya, Amsinckia menziesii intermedia, Artemisia californica, Artemisia douglasiana, Asclepias californica, Asclepias fascicularis, Bromus carinatus, Calandrinia menziesii, Cirsium occidentale, Clarkia unguiculata, Collinsia concolor, Cordylanthus rigidus, Cryptantha intermedia, Deinandra fasciculata, Delphinium parryi, Dipterostemon capitatus, Leymus condensatus, Elymus elymoides, Elymus glaucus, Leymus triticoides, Encelia californica, Epilobium canum, Eriogonum elongatum, Eriophyllum confertiflorum, Eschscholzia californica, Festuca microstachys, Gutierrezia californica, Heliotropium, Keckiella antirrhinoides, Lasthenia californica, Lasthenia gracilis, Lathyrus vestitus, Layia platyglossa, Lupinus bicolor, Lupinus succulentus, Malvella leprosa, Melica imperfecta, Penstemon centranthifolius, Penstemon spectabilis, Phacelia californica, Phacelia campanularia, Phacelia minor, Phacelia tanacetifolia, Plagiobothrys, Plantago erecta, Poa secunda, Salvia apiana, Salvia columbariae, Salvia mellifera, Salvia spathacea, Sisyrinchium bellum, Solidago californica, Nassella lepida, Nassella pulchra, Verbena lasiostachys)",
 "HasCoordinate is true",
 "DecimalLatitude is greater than or equal to 32.534156",
 "DecimalLatitude is less than or equal to 33.505073",
 "DecimalLongitude is greater than or equal to -117.597699",
 "DecimalLongitude is less than or equal to -116.080236"
 ]
}

 The dataset includes 87524 records from 83 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001801-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/tbvqj-dvq88
title: Borrelia burgdorferi

description: Keywords: flagella
description: <strong>Tilt Series Date:</strong> 2008-07-17</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Borrelia burgdorferi</p>
<strong>Strain:</strong> B31</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-17-29/rawdata/</p>Borrelia_61.st,  Tilt Series (Pixel Size 0.664 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-17-29/rawdata/Borrelia_61.st"
        > <i class="download icon"></i> Download </a></p>

        Borrelia_61.rec,  Reconstruction (Pixel Size 1.328 nm), 162.8 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-17-29/3dimage_3518/Borrelia_61.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.c6s79c
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "GadmGid is USA.37.7_1",
 "TaxonKey is one of (Crocodylia, Testudines, Squamata)"
 ]
}

 The dataset includes 137 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001819-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/m6mny-w3t19
title: unfixed Listeria

description: Keywords: flagella
description: <strong>Tilt Series Date:</strong> 2008-07-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Listeria monocytogenes</p>
<strong>Strain:</strong> 10403S</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-30-2/rawdata/</p>Listeria_unfixed0730_13_orig.st,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-30-2/rawdata/Listeria_unfixed0730_13_orig.st"
        > <i class="download icon"></i> Download </a></p>

        Listeria_unfixed0730_13.rec,  Reconstruction (Pixel Size 1.922 nm), 239.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.9gmnx7
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Clematis viticella",
 "Country is Czechia",
 "HasCoordinate is true"
 ]
}

 The dataset includes 46 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001821-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/v3551-zby47
title: unfixed Listeria

description: Keywords: flagella
description: <strong>Tilt Series Date:</strong> 2008-09-08</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Listeria monocytogenes</p>
<strong>Strain:</strong> 10403S</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: 2°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-09-08-19/rawdata/</p>Listeria_34k_28.st,  Tilt Series (Pixel Size 0.644 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-09-08-19/rawdata/Listeria_34k_28.st"
        > <i class="download icon"></i> Download </a></p>

        Listeria_34k_28.rec,  Reconstruction (Pixel Size 1.288 nm), 337.2 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sggjz-xnq16
title: MreB depletion

description: Raw data files of MreB depletion
description: <strong>Tilt Series Date:</strong> 2008-01-11</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Caulobacter crescentus</p>
<strong>Strain:</strong> NA1000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-01-11-6/rawdata/</p>MreBdpl011108_005.mrc,  Tilt Series (Pixel Size 0.644 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        MreBdpl011108_005.tif,  8.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/knqgc-kcc19
title: Vibrio cholerae

description: Raw data files of Vibrio cholerae
description: <strong>Tilt Series Date:</strong> 2008-04-01</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Vibrio cholerae</p>
<strong>Strain:</strong> TRH7000</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (63.0°, 63.0°), step: 1°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> FEI Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-04-01-12/rawdata/</p>vcbx436round2_3.mrc,  Tilt Series (Pixel Size 1.259 nm), 1.1 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        vcbx436round2_3.rawtlt,  1.0 kB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2008-04-01-12/file_1038/vcbx436round2_3.rawtlt"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/80czv-z1z03
title: unfixed Listeria

description: Raw data files of unfixed Listeria
description: <strong>Tilt Series Date:</strong> 2008-07-30</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Listeria monocytogenes</p>
<strong>Strain:</strong> 10403S</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 0.0 eV/Å²,  defocus: -12.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> IMOD</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-30-16/rawdata/</p>Listeria_unfixed_0730_37.st,  Tilt Series (Pixel Size 0.961 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        Listeria_unfixed_0730_37_full.rec,  Reconstruction (Pixel Size 1.922 nm), 876.6 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2008-07-30-16/3dimage_3590/Listeria_unfixed_0730_37_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/ftfzq-pzf65
title: MamK deletion strain w/o iron

description: Raw data files of MamK deletion strain w/o iron
description: <strong>Tilt Series Date:</strong> 2005-05-30</p>
<strong>Data Taken By:</strong> Zhuo Li</p>
<strong>Species / Specimen:</strong> Magnetospirillum magneticum</p>
<strong>Strain:</strong> AMB-1</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (0.0°, 0.0°), step: °, constant angular increment, dosage: 0.0 eV/Å²,  defocus: 0.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> UCSF Tomo</p>
<strong>Upload Method:</strong> webload</p>
<strong>Processing Software Used:</strong> </p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/zla2005-05-30-3/rawdata/</p>spqfnofedeltaK004_pos5_18K_16um_120e.mrc,  Tilt Series (Pixel Size 0.0 nm), 688.0 MB  
        
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        spqfnofedeltaK004_pos6_18K_16um_120e.mrc,  Tilt Series (Pixel Size 0.0 nm), 688.0 MB  
        
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