cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.26126/intervals.f2nisg
title: The Branch Angle

description: The branch angle was computed from the angle between the parent and daughter airway vectors defined by the bifurcation nodes.
Typically, and considering the type of aerosol being modeled, three particle deposition mechanisms are used to calculate the deposition within the airways: diffusion, impaction, and sedimentation mechanisms. For example, the branch inclination to gravity is a critical parameter for the sedimentation mechanism in the case of submillimeter particles. The physiological difference in terrestrial locomotion between humans, who are bipedal, and rodents, which are quadrupedal, leads to different assumptions in the tracheobronchial region, for example, that the trachea is parallel to the force of gravity for humans and at 90° to gravity for rodents.
DOI: 10.6084/m9.figshare.14779407
title: sleeptutorialdata.zip

description: sample sleep data in numpy format, with data and label
DOI: 10.6084/m9.figshare.14779407.v1
title: sleeptutorialdata.zip

description: sample sleep data in numpy format, with data and label
DOI: 10.5285/bda782a6-e89a-41a6-8791-f28001bc5d11
title: Marine Isotope Stage 5e diatom assemblages in marine sediment core ANTA91-8 (-70.78 degN, 172.83 degE, Cruise ANTA91) - VERSION 2

description: This dataset presents the relative diatom abundances of 56 species/groups from the 132-120 ka interval in marine sediment core ANTA91-8 (-70.78 degN, 172.83 degE). This age interval corresponds to the peak of Marine Isotope Stage 5e. Microscope slides were prepared using a method adapted from Scherer (1994) and 300+ diatom valves were counted for each depth sample to produce the relative percentage abundance of each diatom species/group. The age model for this dataset has been updated, with new tiepoints between the sediment core magnetic susceptibility and the LR04 benthic delta-O-18 stack selected to improve the graphical alignment. This project was funded by the UK Natural Environment Research Council Grant NE/L002531/1.
description: Sediment core material was collected on Cruise ANTA91 (1990-1991) of the R/V Cariboo (http://www.mna.it/ts-samples/anta91-8c). For the diatom assemblage data, microscope slides were produced using a method adapted from Scherer (1994). Samples of 8-22 mg were exposed to 10% Hydrochloric acid to remove any carbonate, 30% Hydrogen peroxide to break down organic material and a 4% Sodium Hexametaphosphate solution to promote disaggregation and placed in warm water bath for minimum 12 hours. The material was homogenised into a ~10cm water column and allowed to settle randomly onto coverslips over a minimum of 4 hours. The water was drained away and coverslips were mounted on microscope slides with Norland Optical Adhesive (NOA 61). Slides were investigated with a light microscope (Olympus BH-2 at x1000 magnification) and a minimum of 300 diatom valves were counted for each sample. Age Model Aligned to the LR04 chronology by correlating the sediment core magnetic susceptibility to the LR04 benthic foraminiferadelta-O-18 stack (Lisiecki & Raymo 2005). Translation between the LR04 and EDC3 chronologies uses the conversion table in Parrenin et al. (2013). This data set is the updated version of the following dataset: https://doi.org/10/fqj8
description: Instrumentation used: Gravity corer, Diatom settling tanks and bench, Olympus BH-2 light microscope
description: All diatom abundance values have an error of +/-0.16 %. Ages for samples have a chronological uncertainty of ~2 ka. Sediment samples have a depth resolution of 0.7-2 cm and age resolution of 0.3-0.8 ka.
DOI: 10.23634/mmudr.00627728
title: Safety Culture Assessment in Nigeria Oil and Gas Sector

description: Nigeria oil and gas industry present high level of safety and health concern compared to similar industry in developed countries. Poor safety culture is one of the major factors that influence employee’s safety behaviour at work, which may consequently result in injuries and accidents and by strengthening the workplace safety culture it can help improve workers safety performance. The present study evaluates the safety behaviour and its impact on safety performance among Nigeria oil and gas workers. Opinion of 503 frontline employees in fifteen different oil and gas industries located in the country’s Niger Delta region was collected using questionnaire survey.
DOI: 10.5281/zenodo.5031378
title: Analysis of DNA methylation profile of Korean chronic lymphocytic leukaemia (CLL) patients with MeDIP-Seq

description: In this study, we performed genome-wide methylation profiling of eight CLL patients and five control subjects, in an Asian cohort. Methyl-CpG-binding domain sequencing (MBD-Seq) was used as the profiling method. Differential methylation analysis identified a number of differentially methylated regions (DMRs) and genes (DMGs). More regions were hypomethylated than were hypermethylated. Promoters contained the highest proportion of DMRs, while distal intergenic and intron regions contained the largest number of DMRs. Gene Ontology, pathway analysis, and network-based prioritization of DMGs were also performed.
description: DESCRIPTION OF THE FILES sigGenes.xlsx: Full list of DMGs network.pdf: Vector graphics version of Figure 7 in the article network.cys: Cytoscape session file of the network in Figure 7 in the article
DOI: 10.5281/zenodo.5031377
title: Analysis of DNA methylation profile of Korean chronic lymphocytic leukaemia (CLL) patients with MeDIP-Seq

description: In this study, we performed genome-wide methylation profiling of eight CLL patients and five control subjects, in an Asian cohort. Methyl-CpG-binding domain sequencing (MBD-Seq) was used as the profiling method. Differential methylation analysis identified a number of differentially methylated regions (DMRs) and genes (DMGs). More regions were hypomethylated than were hypermethylated. Promoters contained the highest proportion of DMRs, while distal intergenic and intron regions contained the largest number of DMRs. Gene Ontology, pathway analysis, and network-based prioritization of DMGs were also performed.
description: DESCRIPTION OF THE FILES sigGenes.xlsx: Full list of DMGs network.pdf: Vector graphics version of Figure 7 in the article network.cys: Cytoscape session file of the network in Figure 7 in the article
DOI: 10.5285/7731791e-ca4d-43e5-95f7-6e6275e880bf
title: Marine Isotope Stage 5e diatom assemblages in marine sediment core ANTA91-8 (-70.78 degN, 172.83 degE, Cruise ANTA91)

description: A new version of this dataset is now available: Chadwick, M. and Allen, C. (2021). Marine Isotope Stage 5e diatom assemblages in marine sediment core ANTA91-8 (-70.78 degN, 172.83 degE, Cruise ANTA91) - VERSION 2 (Version 2.0) [Data set]. NERC EDS UK Polar Data Centre. https://doi.org/10.5285/BDA782A6-E89A-41A6-8791-F28001BC5D11 This dataset presents the relative diatom abundances of 56 species/groups from the 132-120 ka interval in marine sediment core ANTA91-8 (-70.78 degN, 172.83 degE). This age interval corresponds to the peak of Marine Isotope Stage 5e (130-116 ka). Microscope slides were prepared using a method adapted from Scherer (1994) and 300+ diatom valves were counted for each depth sample to produce the relative percentage abundance of each diatom species/group. This project was funded by the UK Natural Environment Research Council Grant NE/L002531/1.
description: Sediment core material was collected on Cruise ANTA91 (1990-1991) of the R/V Cariboo (http://www.mna.it/ts-samples/anta91-8c). For the diatom assemblage data, microscope slides were produced using a method adapted from Scherer (1994). Samples of 7-20 mg were exposed to 10% Hydrochloric acid to remove any carbonate, 30% Hydrogen peroxide to break down organic material and a 4% Sodium Hexametaphosphate solution to promote disaggregation and placed in warm water bath for minimum 12 hours. The material was homogenised into a ~10cm water column and allowed to settle randomly onto coverslips over a minimum of 4 hours. The water was drained away and coverslips were mounted on microscope slides with Norland Optical Adhesive (NOA 61). Slides were investigated with a light microscope (Olympus BH-2 at x1000 magnification) and a minimum of 300 diatom valves were counted for each sample. Age Model Aligned to the LR04 chronology by correlating the sediment core magnetic susceptibility to the LR04 benthic foraminifera delta-O-18 stack (Lisiecki & Raymo 2005). Translation between the LR04 and EDC3 chronologies uses the conversion table in Parrenin et al. (2013).
description: Instrumentation used: Gravity corer, Diatom settling tanks and bench, Olympus BH-2 light microscope
description: All diatom abundance values have an error of ±0.16 %. Ages for samples have a chronological uncertainty of ~2 ka. Sediment samples have a depth resolution of 0.7-2 cm and age resolution of 0.6-2.8 ka.
DOI: 10.34740/kaggle/dsv/2368271
title: Dutch News Articles
DOI: 10.5281/zenodo.5020294
title: Data and analysis scripts for "Mad7: An IP friendly alternative to Cas9"

description: This is the raw data and analysis scripts for "Mad7: An IP friendly alternative to Cas9"
DOI: 10.5281/zenodo.5020293
title: Data and analysis scripts for "Mad7: An IP friendly alternative to Cas9"

description: This is the raw data and analysis scripts for "Mad7: An IP friendly alternative to Cas9"
DOI: 10.5519/qd.gxr184oj
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (413 records)
DOI: 10.5281/zenodo.5010944
title: ACS_Bayelva_class: 302 high-resolution snow cover maps covering the 2012-2017 snowmelt seasons in the Bayelva catchment (Svalbard, Norway)

description: The ACS_Bayelva_class dataset contains 302 high-resolution binary snow cover images that were obtained by classifying orthrorectified photographs of a 1.77 km^2 area of interest in the Bayelva catchment. This latest version (2.0) of the dataset includes the orthorectified photographs that were used to classify the binary snow cover images. The catchment is close to Ny-Ålesund, the northernmost permanent civilian settlement in the world and a major hub for polar research, in the Norwegian high-Arctic Svalbard archipelago. The imagery has a (roughly) daily temporal resolution and a ground sampling distance (pixel spacing) of 0.5 m. The dataset spans 6 snowmelt seasons, covering the months May-August for the period 2012-2017. The orthophotos were obtained by processing oblique time-lapse photographs taken by a terrestrial automatic camera system (ACS) mounted at 562 m a.s.l. near the summit of Scheteligfjellet (719 m a.s.l.) a few kilometers west of Ny-Ålesund. The orthophotos were manually classified into binary snow cover images (0=no snow, 1=snow) by iteratively selecting a (visually) optimal threshold on the intensity in the blue-band for each image. More details are provided in the study of Aalstad et al. (2020) [a copy is available in this repository] where this dataset was created. The ACS was maintained by scientists from the group of Sebastian Westermann at the Section for Physical Geography and Hydrology in the Department of Geosciences at the University of Oslo, Oslo, Norway.
description: This work was funded by SatPerm (239918; Research Council of Norway) and the European Space Agency Permafrost CCI project (https://climate.esa.int/en/projects/permafrost/). The dataset has been archived as a contribution to Chapter 10 of the State of Environmental Science in Svalbard (SESS) Report 2020 published by the Svalbard Integrated Arctic Earth Observing System (SIOS) in Longyearbyen, Svalbard, Norway.
description: {"references": ["Aalstad, K., Bertino, L., and Westermann, S. (2020): Evaluating satellite retrieved fractional snow-covered area at a high-Arctic site using terrestrial photography, Remote Sensing of Environment, https://doi.org/10.1016/j.rse.2019.111618", "Aalstad, K., Westermann, S., Schuler, T.V., Boike, J., and Bertino, L. (2018): Ensemble-based assimilation of fractional snow-covered area satellite retrievals to estimate the snow distribution at Arctic sites, The Cryosphere, https://doi.org/10.5194/tc-12-247-2018", "Salzano, R., Aalstad, K., Boldrini, E., Gallet, J.-C., K\u0119pski, D., Luks, B., Nilsen, L., Salvatori, R., and Westermann, S. (2021). Terrestrial photography applications on snow cover in Svalbard (PASSES). SESS Report 2020 - the State of Environmental Science in Svalbard - an Annual Report. Longyearbyen: Svalbard Integrated Arctic Earth Observing System. http://doi.org/10.5281/zenodo.4294084"]}
DOI: 10.5281/zenodo.4032910
title: ACS_Bayelva_class: 302 high-resolution snow cover maps covering the 2012-2017 snowmelt seasons in the Bayelva catchment (Svalbard, Norway)

description: The ACS_Bayelva_class dataset contains 302 high-resolution binary snow cover images that were obtained by classifying orthrorectified photographs of a 1.77 km^2 area of interest in the Bayelva catchment. This latest version (2.0) of the dataset includes the orthorectified photographs that were used to classify the binary snow cover images. The catchment is close to Ny-Ålesund, the northernmost permanent civilian settlement in the world and a major hub for polar research, in the Norwegian high-Arctic Svalbard archipelago. The imagery has a (roughly) daily temporal resolution and a ground sampling distance (pixel spacing) of 0.5 m. The dataset spans 6 snowmelt seasons, covering the months May-August for the period 2012-2017. The orthophotos were obtained by processing oblique time-lapse photographs taken by a terrestrial automatic camera system (ACS) mounted at 562 m a.s.l. near the summit of Scheteligfjellet (719 m a.s.l.) a few kilometers west of Ny-Ålesund. The orthophotos were manually classified into binary snow cover images (0=no snow, 1=snow) by iteratively selecting a (visually) optimal threshold on the intensity in the blue-band for each image. More details are provided in the study of Aalstad et al. (2020) [a copy is available in this repository] where this dataset was created. The ACS was maintained by scientists from the group of Sebastian Westermann at the Section for Physical Geography and Hydrology in the Department of Geosciences at the University of Oslo, Oslo, Norway.
description: This work was funded by SatPerm (239918; Research Council of Norway) and the European Space Agency Permafrost CCI project (https://climate.esa.int/en/projects/permafrost/). The dataset has been archived as a contribution to Chapter 10 of the State of Environmental Science in Svalbard (SESS) Report 2020 published by the Svalbard Integrated Arctic Earth Observing System (SIOS) in Longyearbyen, Svalbard, Norway.
description: {"references": ["Aalstad, K., Bertino, L., and Westermann, S. (2020): Evaluating satellite retrieved fractional snow-covered area at a high-Arctic site using terrestrial photography, Remote Sensing of Environment, https://doi.org/10.1016/j.rse.2019.111618", "Aalstad, K., Westermann, S., Schuler, T.V., Boike, J., and Bertino, L. (2018): Ensemble-based assimilation of fractional snow-covered area satellite retrievals to estimate the snow distribution at Arctic sites, The Cryosphere, https://doi.org/10.5194/tc-12-247-2018", "Salzano, R., Aalstad, K., Boldrini, E., Gallet, J.-C., K\u0119pski, D., Luks, B., Nilsen, L., Salvatori, R., and Westermann, S. (2021). Terrestrial photography applications on snow cover in Svalbard (PASSES). SESS Report 2020 - the State of Environmental Science in Svalbard - an Annual Report. Longyearbyen: Svalbard Integrated Arctic Earth Observing System. http://doi.org/10.5281/zenodo.4294084"]}
DOI: 10.5255/ukda-sn-855000
title: Supporting Autistic Adults’ Episodic Memory Recall in Interviews: The Role of Executive Functions, Theory of Mind, and Language, 2017-2020

description: Autistic people have difficulties recalling episodic memories, including retrieving fewer or less specific and detailed memories compared to typically developing (TD) people. However, the ability to effectively recall episodic memories is crucial in many real-world contexts, such as the Criminal Justice System, medical consultations, and employment interviews. Autistic people’s episodic memory difficulties are most apparent when open, unsupportive questions are used. The ‘Task Support Hypothesis’ posits that autistic people can recall as much information as TD people with more supportive questioning (Bowler et al., 1997). Alongside problems retrieving episodic memories, autistic people also experience difficulties with executive functioning, Theory of Mind (ToM), and expressive language. The current study aimed to assess the impact of these abilities on recall in two previous studies by the authors that compared autistic and TD adults on recall specificity in police, healthcare, and employment interviews, and recall quality in employment interviews under unsupported and supported questioning. Under unsupported questioning only, autistic adults’ episodic ABM recall specificity was predicted by expressive language, whereas for the TD group, only ToM was a significant predictor. No other predictors were significant across the study. Implications for the task support hypothesis are discussed.
DOI: 10.5281/zenodo.5031525
title: Data analysis of an LC-MS dataset from a human urine biofluid cohort study

description: Supplementary dataset and tutorials for the "<strong>Statistical analysis in metabolic phenotyping"</strong> This repository contains Jupyter Notebooks with two examplar metabolomic data analysis workflows, applied to a liquid chromatography mass spectrometry dataset (LC-MS). The LC-MS dataset used comes from a metabolic phenotyping investigation of human urine biofluid samples from a dementia cohort. In this sample set, baseline spot urine samples (first sample collected after recruitment to the study) were collected as part of the AddNeuroMed<sup>1</sup> and ART/DCR study consortia, with the aim of identifying biomarkers of neurocognitive decline and Alzheimer’s disease. These samples were analysed by LC-MS and <sup>1</sup>H NMR, using the methods described by Lewis <em>et al</em><sup>2</sup> and Dona <em>et al</em>. Detailed information about this cohort and other available phenotypic measurements can be found in Lovestone and the ANMERGE<sup>3</sup> repository, which can be accessed via the Sage BioNetworks portal (https://doi.org/10.7303/syn22252881). Information about the metabolic profiling experiments can be found in the study's MetaboLights entry: https://www.ebi.ac.uk/metabolights/MTBLS719. 1. Lovestone, S. <em>et al.</em> AddNeuroMed - The european collaboration for the discovery of novel biomarkers for alzheimer’s disease. in <em>Annals of the New York Academy of Sciences</em> (2009). doi:10.1111/j.1749-6632.2009.05064.x 2. Lewis, M. R. <em>et al.</em> Development and Application of UPLC-ToF MS for Precision Large Scale Urinary Metabolic Phenotyping. <em>Anal. Chem.</em> <strong>88</strong>, acs.analchem.6b01481 (2016). 3. Birkenbihl, C. <em>et al.</em> ANMerge: A comprehensive and accessible Alzheimer’s disease patient-level dataset. <em>medRxiv</em> (2020). doi:10.1101/2020.08.04.20168229
DOI: 10.6084/m9.figshare.14797803
title: Albrich_2021_JVSci

description: Data and analysis script for the paper "The long way back: Development of Central European mountain forests towards old-growth conditions after the cessation of management" published in Journal of Vegetation Science<br>https://doi.org/10.1111/jvs.13052
DOI: 10.6084/m9.figshare.14797803.v1
title: Albrich_2021_JVSci

description: Data and analysis script for the paper "The long way back: Development of Central European mountain forests towards old-growth conditions after the cessation of management" published in Journal of Vegetation Science<br>https://doi.org/10.1111/jvs.13052
DOI: 10.5281/zenodo.5031516
title: Datos_Totales_RIC_2017

description: Tabla con el total de datos del Resultado de Investigación del CIEMAT 2017
DOI: 10.5281/zenodo.5031515
title: Datos_Totales_RIC_2017

description: Tabla con el total de datos del Resultado de Investigación del CIEMAT 2017
DOI: 10.6084/m9.figshare.14818062
title: Supplementary_Table_8_Tissue_expression_stool_DEmiRNA.xlsx

description: Supplementary Table 8. A) Normalized expression levels of the stool DEmiRNAs in data from the TissueAtlas. The Z-score-transformed expression levels are also reported in the bottom. B) Epigenetic states computed at miRNA loci considering the data from the Roadmap Epigenomics Project. AT, active TSS; BT, Bivalent/Poised TSS; E, Enhancer; Q, Quiescent region; R, Repressed region; ST, Strong transcription; WT, Weak transcription; ZNF, Zinc-finger genes and repeated region.
DOI: 10.6084/m9.figshare.14818062.v2
title: Supplementary_Table_8_Tissue_expression_stool_DEmiRNA.xlsx

description: Supplementary Table 8. A) Normalized expression levels of the stool DEmiRNAs in data from the TissueAtlas. The Z-score-transformed expression levels are also reported in the bottom. B) Epigenetic states computed at miRNA loci considering the data from the Roadmap Epigenomics Project. AT, active TSS; BT, Bivalent/Poised TSS; E, Enhancer; Q, Quiescent region; R, Repressed region; ST, Strong transcription; WT, Weak transcription; ZNF, Zinc-finger genes and repeated region.
DOI: 10.6084/m9.figshare.14818062.v1
title: Supplementary_Table_8_Tissue_expression_stool_DEmiRNA.xlsx

description: Supplementary Table 8. A. Normalized expression levels of the stool DEmiRNAs in data from the TissueAtlas. B. Epigenetic states computed at miRNA loci considering the data from the Roadmap Epigenomics Project. AT, active TSS; BT, Bivalent/Poised TSS; E, Enhancer; Q, Quiescent region; R, Repressed region; ST, Strong transcription; WT, Weak transcription; ZNF, Zinc-finger genes and repeated region.
DOI: 10.21942/uva.14844963
title: Hermitage museum membership data

description: The data consists of a sample of 430 respondents. It consists both of members of the Hermitage Museum's membership program and regular visitors at the museum. First, 308 members filled in the questionnaire online after being emailedl. Second, 122 random visitors were surveyed at the museum after they completed their visit. The DV scales were: Cross-buying behavior, Recommendation behavior, Joint visiting behavior, and Recruitment behavior. The mediator scale was: Museum prestige leveraging. The IV scale was: Membership level. In addition, there are a number of control variables (see paper for more details).
DOI: 10.21942/uva.14844963.v1
title: Hermitage museum membership data

description: The data consists of a sample of 430 respondents. It consists both of members of the Hermitage Museum's membership program and regular visitors at the museum. First, 308 members filled in the questionnaire online after being emailedl. Second, 122 random visitors were surveyed at the museum after they completed their visit. The DV scales were: Cross-buying behavior, Recommendation behavior, Joint visiting behavior, and Recruitment behavior. The mediator scale was: Museum prestige leveraging. The IV scale was: Membership level. In addition, there are a number of control variables (see paper for more details).
DOI: 10.6084/m9.figshare.14397914.v1
title: Parasitic Contamination Rate of Arachishypogaea L (Groundnuts), Citrulluslanatus Seeds (Watermelon Seeds), and Ziziphusspina-christi (Nabag) Sold by Street Venders in Khartoum State- Sudan

description: data of parasitic infection found among street vender at Khartoum state, Sudan