cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.17048135
title: Supporting Data for Efficiency of Digital Photolithographic Synthesis of Large, High-Quality DNA Libraries and Microarrays using a Guanine O6 Dephosphitylation Strategy

description: This dataset supports the manuscript "Efficiency of Digital Photolithographic Synthesis of Large, High-Quality DNA Libraries and Microarrays using a Guanine O6 Dephosphitylation Strategy."

This is an updated version of "10.5281/zenodo.15404232". The current version has updated details on "sequencing calculation" and have corrected the sequence direction in "Sequencing_Data_Analysis.xlsx"

It includes the following experiments to analyze the effect of position-dependent G-rich centres on the photolithographic synthesis of DNA microarray:



Hybridization Assay

qPCR

Sequencing


All the data is organized in subfolders, with individual ReadMe files explaining the experiment protocol and data. For sequencing analysis scripts, see: 10.5281/zenodo.15411466

Please cite this dataset using the Zenodo DOI below when referencing these results: 10.5281/zenodo.17048135.
DOI: 10.15468/dl.49d69r
title: Occurrence Download

description: A dataset containing 12134 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Geometry POLYGON((-100.07892 18.2153,-97.81736 18.2153,-97.81736 20.27292,-100.07892 20.27292,-100.07892 18.2153))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Oxyura jamaicensis",
 "Year 1960-2025"
 ]
}

 The dataset includes 12134 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003127-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.axextt
title: Occurrence Download

description: A dataset containing 584 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-90.46353 35.4011,-79.79087 35.4011,-79.79087 40.26285,-90.46353 40.26285,-90.46353 35.4011))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Phylloxeridae"
 ]
}

 The dataset includes 584 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003126-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16923794
title: Carbon fluxes and POC production by fishes in Celtic Sea (derived from Ecopath model)

description: This dataset includes output data from an Ecopath model of the Celtic Sea. These data represent the last year state of the modelled ecosystem after a simulation running from 2003 to 2050. It consists in parameters and fluxes of two scenarios (with and without fishing).

This dataset was compiled for deliverable 5.2 of the Ocean-ICU Horizon Europe project. 

This work was co-funded by the European Union under grant agreement no. 101083922 (OceanICU) and UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee [grant number 10054454, 10063673, 10064020, 10059241, 10079684, 10059012, 10048179]. The views, opinions and practices used to produce this dataset are however those of the author(s) only and do not necessarily reflect those of the European Union or European Research Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

Dataset description

The following data (in .csv and .rds format) are available:



Raw data ("raw_data_*_scenario.csv"), which include basic parameters and outputs of Ecopath (Respiration, Consumption, Prodcution/Biomass, Biomass, etc.). This is split in two dataframes (one for each scenario). 

group_categories.rds is a list describing the various aggregations used during model analysis, mainly based on ecological roles. 

Dataframe of the annual carbon fluxes from fishes to particulate organic carbon groups ("flux_fish_to_poc.csv ")

Dataframe of the variation in carbon fluxes between the two scenarios ("variation_flux_fish_to_poc.csv")
DOI: 10.5281/zenodo.16923795
title: Carbon fluxes and POC production by fishes in Celtic Sea (derived from Ecopath model)

description: This dataset includes output data from an Ecopath model of the Celtic Sea. These data represent the last year state of the modelled ecosystem after a simulation running from 2003 to 2050. It consists in parameters and fluxes of two scenarios (with and without fishing).

This dataset was compiled for deliverable 5.2 of the Ocean-ICU Horizon Europe project. 

This work was co-funded by the European Union under grant agreement no. 101083922 (OceanICU) and UK Research and Innovation (UKRI) under the UK government’s Horizon Europe funding guarantee [grant number 10054454, 10063673, 10064020, 10059241, 10079684, 10059012, 10048179]. The views, opinions and practices used to produce this dataset are however those of the author(s) only and do not necessarily reflect those of the European Union or European Research Executive Agency. Neither the European Union nor the granting authority can be held responsible for them.

Dataset description

The following data (in .csv and .rds format) are available:



Raw data ("raw_data_*_scenario.csv"), which include basic parameters and outputs of Ecopath (Respiration, Consumption, Prodcution/Biomass, Biomass, etc.). This is split in two dataframes (one for each scenario). 

group_categories.rds is a list describing the various aggregations used during model analysis, mainly based on ecological roles. 

Dataframe of the annual carbon fluxes from fishes to particulate organic carbon groups ("flux_fish_to_poc.csv ")

Dataframe of the variation in carbon fluxes between the two scenarios ("variation_flux_fish_to_poc.csv")
DOI: 10.15468/dl.kfbn9f
title: Occurrence Download

description: A dataset containing 394 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Toona sinensis",
 "Year 1981-2022"
 ]
}

 The dataset includes 394 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003128-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17456150
title: Exposure and buried dating of Huashan samples

description: Dears users,

Here the explanation to use these matlab codes.

code : "fitting_no_erosion_FOM"--> Assuming no erosion, the OSL-depth profiles (DPs) of individual samples were fitted using the FOM to obtain the depth of half saturation (DHS) and grouping.

code : "fitting_no_erosion_GOM_r2"--> Assuming no erosion, the OSL-DPs of individual samples were fitted using the GOM (r=2) to obtain DHS and grouping.

code "fitting_uderground_GOM_r2"--> The OSL-DPs of subsurface samples were fitted with the GOM (r=2) to obtain the DHS and grouping.

code "get_t_groups_erosion_corr_GOM_r1"--> The OSL-DPs corrected for erosion were fitted with the GOM (r=1) (like FOM) to determine the exposure ages of samples from different episodes.

code "get_t_groups_erosion_corr_GOM_r2"--> The OSL-DPs corrected for erosion were fitted with the GOM (r=2) (like FOM) to determine the exposure ages of samples from different episodes.

code "get_t_groups_erosion_corr_GOM_r3"--> The OSL-DPs corrected for erosion were fitted with the GOM (r=3) (like FOM) to determine the exposure ages of samples from different episodes.

The txt data shows the OSL-depth actually measured.

Furthermore, OSL-DPs for bedrock fault plane samples and the binx files for burial dating have been uploaded. This is accompanied by an Excel file named "Relationship between Slice No. and Binx Position". This file is used to determine the correspondence between the rock slice numbers and their respective positions in the binx files, and it also contains the resultant processed data.

 

Please contact me for any informations: luomingearth@163.com

Cheers,

Ming Luo
DOI: 10.25574/28293
title: Chandra X-ray Observatory ObsId 28293

description: The X-ray properties of the most luminous quasars with outflows
DOI: 10.25574/28312
title: Chandra X-ray Observatory ObsId 28312

description: THE CLUSTER EVOLUTION REFERENCE ENSEMBLE AT LOW-Z (CEREAL): A LOW-MASS EXTENSION
DOI: 10.15468/dl.wvpcx7
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dioscorea plantaginifolia"
 ]
}

 The dataset includes 17 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003129-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25574/28510
title: Chandra X-ray Observatory ObsId 28510

description: JOINT CHANDRA + XMM-NEWTON OBSERVATIONS TO CHARACTERIZE A GAMMA-RAY BRIGHT PULSAR WIND NEBULA
DOI: 10.25574/28698
title: Chandra X-ray Observatory ObsId 28698

description: A high resolution view of a nearby group as it falls into the core of the Shapley supercluster
DOI: 10.25574/29189
title: Chandra X-ray Observatory ObsId 29189

description: The X-ray properties of the most luminous quasars with outflows
DOI: 10.25345/c56w96p1p
title: MassIVE MSV000099648 - Sphingosine Kinase-2 Inhibition Increases Acetyl-CoA Carboxylase Activity
title: The presence of immunosuppressive cells, including myeloid-derived suppressor cells (MDSCs) and tumor-associated macrophages (TAMs), within the tumor microenvironment (TME) represents a significant challenge in adoptive T cell therapy. Consequently, strategies designed to improve anti-tumor T cell function in vivo by mitigating this immunosuppression are essential. Here in, we demonstrate that inhibiting sphingosine kinase-2 (SphK2) mediated sphingosine-1-phosphate (S1P) generation in myeloid-derived suppressor cells (MDSCs) significantly reduces their suppressive potential and promotes their antigen presenting capacity. An S1P pull-down assay, followed by mass spectrometry-based proteomics analysis, demonstrated that S1P interacts with multiple proteins essential for metabolic processes. Both isoforms of Acetyl CoA Carboxylase (ACC1 and ACC2), which are the rate-limiting enzymes in fatty acid metabolism, exhibit binding to S1P.
DOI: 10.21985/n2-he9v-hm91
title: Neo4j User Defined Function code
DOI: 10.15468/dl.5ud3p2
title: Occurrence Download

description: A dataset containing 3275238373 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 {
 "or" : [
 "Year 1910-1955",
 "Year 1980-2025"
 ]
 }
 ]
}

 The dataset includes 3275238373 records from 67391 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003029-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xn3r3v
title: Occurrence Download

description: A dataset containing 2556 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Human Observation)",
 "Geometry POLYGON((-100.07892 18.2153,-97.81736 18.2153,-97.81736 20.27292,-100.07892 20.27292,-100.07892 18.2153))",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ortalis poliocephala",
 "Year 1960-2025"
 ]
}

 The dataset includes 2556 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003133-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5vbybb
title: Occurrence Download

description: A dataset containing 2497 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Amphiuma means"
 ]
}

 The dataset includes 2497 records from 72 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003132-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rd74vf
title: Occurrence Download

description: A dataset containing 760 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ailurus fulgens"
 ]
}

 The dataset includes 760 records from 76 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003134-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gkjst7
title: Occurrence Download

description: A dataset containing 602 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Triturus dobrogicus"
 ]
}

 The dataset includes 602 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003135-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15854677
title: Stim circuits and simulation results for "A dynamic circuit for the honeycomb Floquet code"
DOI: 10.5281/zenodo.17457945
title: Stim circuits and simulation results for "A dynamic circuit for the honeycomb Floquet code"
DOI: 10.15468/dl.kqt3sr
title: Occurrence Download

description: A dataset containing 52297 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Zelkova serrata",
 "Year 1981-2022"
 ]
}

 The dataset includes 52297 records from 161 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003084-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.n4kfz2
title: Occurrence Download

description: A dataset containing 6014 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Casuarina equisetifolia",
 "Year 1981-2022"
 ]
}

 The dataset includes 6014 records from 301 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003136-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3ugxis
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Nesoryzomys swarthi Orr, 1938"
 ]
}

 The dataset includes 24 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032269-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7sxmvc
title: Occurrence Download

description: A dataset containing 66 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Europe",
 "Country is Portugal",
 "OccurrenceStatus is Present",
 "TaxonKey is Canis lupus Linnaeus, 1758",
 "Year 2000-2020"
 ]
}

 The dataset includes 66 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0137145-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sx7wjd
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferula fontqueri Jury"
 ]
}

 The dataset includes 13 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005150-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4pmzd0
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Halosaurus carinicauda (Alcock, 1889)",
 "Country is India"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032266-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.76938g
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euaspis edentata Baker, 1995"
 ]
}

 The dataset includes 23 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0156883-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6nz3em
title: Occurrence Download

description: A dataset containing 253145 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((13.21476 52.39658,13.40424 52.41838,13.357 52.58908,13.19503 52.57125,13.18861 52.45637,13.21476 52.39658))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 253145 records from 243 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005113-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fmewds
title: Occurrence Download

description: A dataset containing 317824 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Philippines",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 317824 records from 171 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0158758-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9wvxcq
title: Occurrence Download

description: A dataset containing 2399 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "TaxonKey is Carthamus tinctorius L.",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2399 records from 114 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032270-180131172636756/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10878451
title: AnoVox_Dynamic_Mono_Town05
DOI: 10.5281/zenodo.10878452
title: AnoVox_Dynamic_Mono_Town05
DOI: 10.15468/dl.4m3had
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferula equisetacea Koso-Pol."
 ]
}

 The dataset includes 14 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005072-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vq8bf7
title: Occurrence Download

description: A dataset containing 161365 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyprinus carpio Linnaeus, 1758"
 ]
}

 The dataset includes 161365 records from 475 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0172459-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sax360
title: Occurrence Download

description: A dataset containing 1613 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Issue is Geodetic datum assumed WGS84",
 "Year 2000-2019",
 "Geometry POLYGON((-68.55469 -59.8713,-22.85156 -21.91044,-22.85156 9.1368,-49.57031 36.6261,-45.35156 52.50418,-62.92969 73.23684,-80.50781 77.00784,-151.52344 76.19339,-170.50781 72.19256,-165.58594 45.60788,-135.35156 -12.52025,-68.55469 -59.8713))",
 "HasCoordinate is true",
 "TaxonKey is Pecari tajacu (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1613 records from 29 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032271-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rm3wtk
title: Occurrence Download

description: A dataset containing 1440 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Petrosaurus mearnsi (Stejneger, 1894)"
 ]
}

 The dataset includes 1440 records from 52 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0185807-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdbdqf
title: Occurrence Download

description: A dataset containing 207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ficinia acuminata (Nees) Nees"
 ]
}

 The dataset includes 207 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005148-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10878869
title: AnoVox_Dynamic_Mono_Town04
DOI: 10.5281/zenodo.10878870
title: AnoVox_Dynamic_Mono_Town04
DOI: 10.15468/dl.1h1ef0
title: Occurrence Download

description: A dataset containing 387 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is Colombia",
 "Country is Ecuador",
 "Country is Peru"
 ]
 },
 "TaxonKey is Centrolene buckleyi (Boulenger, 1882)"
 ]
}

 The dataset includes 387 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0032273-180508205500799/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nk2v6b
title: Occurrence Download

description: A dataset containing 25 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ferula fedoroviorum Pimenov"
 ]
}

 The dataset includes 25 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005095-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uf47jy
title: Occurrence Download

description: A dataset containing 151 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Taxillus chinensis (DC.) Danser"
 ]
}

 The dataset includes 151 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0006698-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3fk7xj
title: Occurrence Download

description: A dataset containing 31 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Gentiana borneensis Hook.fil."
 ]
}

 The dataset includes 31 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005174-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.