cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7284/134619
title: TSG (Thermosalinograph) data collected during research cruise LMG1902 using a Sea-Bird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/134632
title: TSG (Thermosalinograph) data collected during research cruise LMG1902 using a Sea-Bird SBE-45 instrument system onboard the platform RV Laurence M. Gould

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.26078/jnpn-4a13
title:   Ploidy and Clonal Membership in Populus Tremuloides from RADseq Data

description: Ipyrad pipeline parameters files, raw sequence data, barcodes and supporting scripts for clonal and cytotype sample assignment of Populus tremuloides.
DOI: 10.15468/xdec6r
title: Bostryx tortoranus (Doering, 1879) species complex (Gastropoda: Stylommatophora: Bulimulidae), a review of taxonomy and distribution of endemic species from Argentina

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miranda, María José (2014): Bostryx tortoranus (Doering, 1879) species complex (Gastropoda: Stylommatophora: Bulimulidae), a review of taxonomy and distribution of endemic species from Argentina. Journal of Natural History 49 (17 - 18): 995-1022, DOI: 10.1080/00222933.2014.981313, URL: http://dx.doi.org/10.1080/00222933.2014.981313
DOI: 10.5066/p9iob90o
title: National Assessment of Oil and Gas Project, Northern Alaska Province (001). Petroleum Systems and Geologic Assessment of Gas Hydrates in Northern Alaska 2008. Limits of the Gas Hydrate stability zone contour lines

description: The limits of Gas Hydrate (GH) stability zone contour lines (GH stability thickness zero) shown here is a geographic boundary defined and mapped on basis of U.S. Geological Survey Digital Data Series DDS-35 Gas Hydrate assessment contours that were created in Support of the 1995 National Assessment of United States Oil and Gas Resources. The 1995 CD-ROM released digital map data, figures, and text used in the "1995 National Assessment of United States Oil and Gas Resources -- Results, Methodology, and Supporting Data," U.S. Geological Survey Digital Data DDS-30 (Gautier and others, 1995). The 1995 Assessment Gas Hydrate thickness boundaries were revised and updated according to recent methane hydrate stability zone studies done in Northern Alaska. In-house well log data/surveys study with geochemical sampling on evidence of thermo gas, resistivity-temperature from Lachenbruch et al and seismic facies were mapped and used as a guide for the gas hydrate stability zone thickness. The original (1995) Gas Hydrate stability data was given as the thickness of the hydrate stability field in meters (200 meters intervals). Contours were regridded using editing surface tools of the ArcMap and applied spline surface analysis tools in order to create contour interval in feet. The zero contour line was separated into individual shapefile and presented here in order to show Gas Hydrates Assessment limits of the North Slope. The offshore extent of the gas-hydrate stability zone is not well established.
DOI: 10.6084/m9.figshare.12854171.v1
title: Dragonfly (Odonata) community structure in the Eastern Highlands Biodiversity Hotspot of Zimbabwe: potential threats of land use changes on freshwater invertebrates

description: We examined the diversity and potential drivers of dragonfly distribution in a biodiversity hotspot of Southern Africa (Eastern Highlands, Zimbabwe) by surveying 30 sites (13 lentic and 17 lotic habitats) located within this region. Additionally, we identified the anthropogenic factors that may threaten Odonata diversity and abundance. Our results revealed that 27 odonate species are associated with dams and ponds, one species is associated with streams and four species are associated with swamp forests. Considering odonate diversity between protected and unprotected areas, we found significantly higher diversity of odonates in streams in protected areas compared to non-protected areas. Broadly, we found anthropogenic activities (e.g. commercial exotic tree plantations, mining activities, vegetation clearing) possibly affect Odonata diversity (by decreasing abundance and diversity) compared to those within protected and undisturbed habitats. Our results reveal that several human activities like human encroachment into riverine habitats potentially threaten the existence of freshwater species in this biodiversity hotspot and biodiversity hotspots elsewhere.
DOI: 10.6084/m9.figshare.12854171
title: Dragonfly (Odonata) community structure in the Eastern Highlands Biodiversity Hotspot of Zimbabwe: potential threats of land use changes on freshwater invertebrates

description: We examined the diversity and potential drivers of dragonfly distribution in a biodiversity hotspot of Southern Africa (Eastern Highlands, Zimbabwe) by surveying 30 sites (13 lentic and 17 lotic habitats) located within this region. Additionally, we identified the anthropogenic factors that may threaten Odonata diversity and abundance. Our results revealed that 27 odonate species are associated with dams and ponds, one species is associated with streams and four species are associated with swamp forests. Considering odonate diversity between protected and unprotected areas, we found significantly higher diversity of odonates in streams in protected areas compared to non-protected areas. Broadly, we found anthropogenic activities (e.g. commercial exotic tree plantations, mining activities, vegetation clearing) possibly affect Odonata diversity (by decreasing abundance and diversity) compared to those within protected and undisturbed habitats. Our results reveal that several human activities like human encroachment into riverine habitats potentially threaten the existence of freshwater species in this biodiversity hotspot and biodiversity hotspots elsewhere.
DOI: 10.6084/m9.figshare.13187562
title: Distribution, autecology, genetic characterization, and conservation of the Western Mediterranean endemic dragonfly <i>Orthetrum nitidinerve</i> (Selys, 1841): insights from Italy

description: Aquatic macroinvertebrates are a primary component of freshwater ecosystems and one of the most threatened by anthropogenic pressures. Among them, dragonflies are a charismatic group of growing scientific and social interest. However, little is known about the natural history of several species. One paradigmatic example is the declining <i>Orthetrum nitidinerve</i>, a Western Mediterranean endemic anisopteran. We reviewed published and new data on this species, addressing distribution, autecology, and conservation (with a focus on Italy), and provide its first genetic characterization and phylogenetic placement within the genus. In Italy, the species is known from 50 sites so far (only 17 breeding populations) located in Sardinia and Sicily (1841–2019, only 22 from 1990 onward). Records from continental Italy are due to misidentification. The flight period in Italy spans between May and September. Habitat consists of permanent freshwater (mostly helocrene sources, seepages, and small brooks), slow-flowing, shallow, with muddy bottom deposits at elevation from the sea level up to 1000 m asl. All the breeding populations are found in open and sunny landscapes, almost invariably in extensive pasturelands. The species has strongly declined in Sicily, whereas several large populations still occur in Sardinia. The major threats identified so far are agriculture and grazing intensification or abandonment and drought/source desiccation determined by water overexploitation and climate change. The first ever provided mitochondrial COI barcode and ITS nuclear sequences allowed a first tentative phylogenetic placement of the species as a sister group of the <i>O. brunneum</i>/<i>O. lineostigma</i> lineage.
DOI: 10.6084/m9.figshare.13187562.v2
title: Distribution, autecology, genetic characterization, and conservation of the Western Mediterranean endemic dragonfly <i>Orthetrum nitidinerve</i> (Selys, 1841): insights from Italy

description: Aquatic macroinvertebrates are a primary component of freshwater ecosystems and one of the most threatened by anthropogenic pressures. Among them, dragonflies are a charismatic group of growing scientific and social interest. However, little is known about the natural history of several species. One paradigmatic example is the declining <i>Orthetrum nitidinerve</i>, a Western Mediterranean endemic anisopteran. We reviewed published and new data on this species, addressing distribution, autecology, and conservation (with a focus on Italy), and provide its first genetic characterization and phylogenetic placement within the genus. In Italy, the species is known from 50 sites so far (only 17 breeding populations) located in Sardinia and Sicily (1841–2019, only 22 from 1990 onward). Records from continental Italy are due to misidentification. The flight period in Italy spans between May and September. Habitat consists of permanent freshwater (mostly helocrene sources, seepages, and small brooks), slow-flowing, shallow, with muddy bottom deposits at elevation from the sea level up to 1000 m asl. All the breeding populations are found in open and sunny landscapes, almost invariably in extensive pasturelands. The species has strongly declined in Sicily, whereas several large populations still occur in Sardinia. The major threats identified so far are agriculture and grazing intensification or abandonment and drought/source desiccation determined by water overexploitation and climate change. The first ever provided mitochondrial COI barcode and ITS nuclear sequences allowed a first tentative phylogenetic placement of the species as a sister group of the <i>O. brunneum</i>/<i>O. lineostigma</i> lineage.
DOI: 10.6084/m9.figshare.13187562.v1
title: Distribution, autecology, genetic characterization, and conservation of the <b>W</b>estern Mediterranean endemic dragonfly <i>Orthetrum nitidinerve</i> (Selys, 1841): insights from Italy

description: Aquatic macroinvertebrates are a primary component of freshwater ecosystems and one of the most threatened by anthropogenic pressures. Among them, dragonflies are a charismatic group of growing scientific and social interest. However, little is known about the natural history of several species. One paradigmatic example is the declining <i>Orthetrum nitidinerve</i>, a Western Mediterranean endemic anisopteran. We reviewed published and new data on this species, addressing distribution, autecology, and conservation (with a focus on Italy), and provide its first genetic characterization and phylogenetic placement within the genus. In Italy, the species is known from 50 sites so far (only 17 breeding populations) located in Sardinia and Sicily (1841–2019, only 22 from 1990 onward). Records from continental Italy are due to misidentification. The flight period in Italy spans between May and September. Habitat consists of permanent freshwater (mostly helocrene sources, seepages, and small brooks), slow-flowing, shallow, with muddy bottom deposits at elevation from the sea level up to 1000 m asl. All the breeding populations are found in open and sunny landscapes, almost invariably in extensive pasturelands. The species has strongly declined in Sicily, whereas several large populations still occur in Sardinia. The major threats identified so far are agriculture and grazing intensification or abandonment and drought/source desiccation determined by water overexploitation and climate change. The first ever provided mitochondrial COI barcode and ITS nuclear sequences allowed a first tentative phylogenetic placement of the species as a sister group of the <i>O. brunneum</i>/<i>O. lineostigma</i> lineage.
DOI: 10.5286/isis.e.rb2010712-2
title: Li+ Diffusion Dynamics in Pure and Doped Na2Li2Ti6O14

description: Na2Li2Ti6O14 (NaLTO) has potential to be developed as an alternative anode material with improved safety, cycling stability, and rate performance. The practical application of the NaLTO anode still need to be studied to understand the diffusion dynamics in NaLTO at different temperatures. Hence, our study with muon technique is aiming to explain Li+ diffusion dynamics in pure, Zr-doped, and (Zr-Al)-co-doped orthorhombic NaLTO, focused in the temperature range of 120 K – 400 K and investigate how the dopants improve the Li+ conductivity of NaLTO. We expect that the Ti-site substitution by Zr4+ ions in Zr-doped NaLTO enhance the Li+ diffusion due to enlargement of its lattice parameter without changing the orthorhombic structure. In case of Al3+ doping in (Zr-Al)-co-doped NaLTO, the Na-site substitution by Al3+ ions can improve the electronic conductivity by electron doping mechanism.
DOI: 10.6084/m9.figshare.14668494
title: Measured data by the time-lens for 10 different pump powers

description: The measured double peaks by the time-lens are in wave1.mat up to wave10.mat. The power levels are in pump_power.mat
DOI: 10.5281/zenodo.4783714
title: Dataset to accompany "Simulation-guided engineering of antibiotics for improved bacterial uptake"

description: Parameters and structures to accompany "Simulation-guided engineering of antibiotics for improved bacterial uptake" by Ferreira, Aguilar, Villamil Giraldo, and Kasson.
DOI: 10.5281/zenodo.4783713
title: Dataset to accompany "Simulation-guided engineering of antibiotics for improved bacterial uptake"

description: Parameters and structures to accompany "Simulation-guided engineering of antibiotics for improved bacterial uptake" by Ferreira, Aguilar, Villamil Giraldo, and Kasson.
DOI: 10.25345/c58r6v
title: MassIVE MSV000087493 - MudPIT analysis of S. pombe proteins interacting with Pof8
title: To identify proteins interacting with Pof8, cell-free extracts of strains FP1547 harboring 3xFLAG epitope-tagged Pof8 and untagged control (FP1546) were diluted to 5 mg/ml in 8 ml of lysis buffer (50 mM Tris-HCl pH 7.5, 150 mM sodium chloride, 0.1% (v/v) NP40 and 10% (v/v) glycerol) plus complete EDTA-free protease inhibitor cocktail (Roche), 0.5 mM PMSF, 1 mM EDTA, and 0.1 mM DTT and incubated with 500 ul of EZview Red Flag-agarose 50% slurry equilibrated in lysis buffer. The mix was incubated for 8 hours at 4 C with gentle rotation. Agarose beads were collected by centrifugation at 300 x g for 5 min with low brake and washed 5 times for 5 minutes with 5 ml of wash buffer (50 mM Tris-HCl pH 7.5, 250 mM sodium chloride, 0.1% (v/v) NP40 and 10% (v/v) glycerol) at 4 C with gentle rotation. Proteins were eluted from beads by incubation for 30 min with 500 ul elution buffer (50 mM Tris- HCl pH 7.5, 250 mM sodium chloride, 0.1% (v/v) NP40 and 10% (v/v) glycerol, and 100 ug/ml 3xFLAG peptide) at 4 C. The elution step was repeated two more times and the eluates were pooled. A 4 ul aliquot of the first eluate was used for Silver stained SDS PAGE. The elutes were treated with 0.1U of benzonase for 30 min at 37 C and further diluted with the same volume of 100 mM Tris-HCl, pH 8.5. The samples were then split in three 400ul aliquots, mixed with 100 ul of 100% TCA and incubated at 4 C overnight. After centrifugation at 14,000 rpm for 30 min at 4 C, the pellets were washed twice with 500 ul cold acetone and centrifuged at 14,000 rpm for 10 min after each wash. Air dried pellets were resuspended in 30 ul 100 mM Tris-HCl, pH 8.5, 8M Urea and pooled. 4.5 ul of 0.1M TCEP was added to the pooled solution to a final concentration of 5 mM and incubated for 30 min at room temperature. After the incubation, 1.8 ul of 0.5 M CAM was added and incubated for 30 min at RT in the dark. Proteins were then digested with 0.1 ug/ul Lys-C at 37 C overnight. The samples were then diluted to 2M Urea with 100 mM Tris-HCl, pH8.5, added with CaCl2 to 2 mM and digested with 0.1 ug/ul Trypsin at 37 C overnight. Finally, 90% formic acid was added to a final concentration of 5%. and samples were analyzed by MudPIT. Tandem mass (MS/MS) spectra were interpreted using ProLuCID against the NCBI database of S. pombe proteins supplemented with 177 sequences from common contaminants (human keratins, IgGs, proteolytic enzymes). To estimate relative protein levels, (dNSAFs) were calculated for each detected protein. dNSAF values take into account peptides shared between multiple proteins and the length of the protein for normalization.
DOI: 10.7284/135768
title: ADCP (Acoustic Doppler Current Profiler) data collected during research cruise AR36 using a Hawaii UHDAS instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135775
title: Multiplexed data collected during research cruise AR36 using a WHOI dsLog gyro instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135770
title: CTD (Conductivity, Temperature, Depth) data collected during research cruise AR36 using a Sea-Bird SBE-911+ instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135760
title: Fluorometer data collected during research cruise AR36 using a WET Labs WETStar instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135765
title: GNSS (Global Navigation Satellite System) data collected during research cruise AR36 using a C&C C-Nav 3050 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135769
title: Gravimeter data collected during research cruise AR36 using a Bell BGM-3 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135771
title: Meteorological Station data collected during research cruise AR36 using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135772
title: Meteorological Station data collected during research cruise AR36 using a Vaisala WXT520 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135774
title: Multibeam Echosounder data collected during research cruise AR36 using a Kongsberg EM122 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135764
title: Radiometer data collected during research cruise AR36 using a Biospherical QSR-2150 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135766
title: Radiometer data collected during research cruise AR36 using a Eppley RAD instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135763
title: Singlebeam Echosounder data collected during research cruise AR36 using a Knudsen 3260 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135762
title: Speedlog data collected during research cruise AR36 using a JRC JLN-550 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135767
title: SSV (Sound Speed Velocimeter) data collected during research cruise AR36 using a AML SmartX P1S2 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135773
title: Water Temperature data collected during research cruise AR36 using a Sea-Bird SBE-48 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.7284/135761
title: TSG (Thermosalinograph) data collected during research cruise AR36 using a Sea-Bird SBE-45 instrument system onboard the platform RV Neil Armstrong

description: Original (unprocessed) data collected during a Field_expedition
DOI: 10.6084/m9.figshare.14478168.v2
title: Data - Solid-state NMR of Spin-9/2 Nuclei 115In and 209Bi in Functional Inorganic Complex Oxides

description: solid-state NMR spectra (FID and FT files in JCAMP-DX and Bruker TopSpin formats), output files from CASTEP DFT calculations (.castep and .magres text files), diffraction patterns (XY text files)
DOI: 10.6084/m9.figshare.14478168
title: Data - Solid-state NMR of Spin-9/2 Nuclei 115In and 209Bi in Functional Inorganic Complex Oxides

description: solid-state NMR spectra (FID and FT files in JCAMP-DX and Bruker TopSpin formats), output files from CASTEP DFT calculations (.castep and .magres text files), diffraction patterns (XY text files)
DOI: 10.6084/m9.figshare.14478168.v1
title: Data - Solid-state NMR of Spin-9/2 Nuclei 115In and 209Bi in Functional Inorganic Complex Oxides

description: solid-state NMR spectra (FID files in JCAMP-DX and Bruker TopSpin formats), output files from CASTEP DFT calculations (.castep and .magres text files), diffraction patterns (XY text files)
DOI: 10.26078/d71p-9a11
title: Aircraft Input Files for Pylot and MachUpX

description: This data was used in an attempt at system identification for rudderless aircraft using simulation.
DOI: 10.5066/p9eseobb
title: Gillette coalfield boundary, Wyoming

description: This ArcView shapefile is a polygon representation of the area of the Gillette Coalfield. This theme was created specifically for the National Coal Resource Assessment in the Northern Rocky Mountains and Great Plains Region.
DOI: 10.5066/p9r44ljw
title: Unioned layer for the Wyodak-Anderson coal zone in the Gillette coalfield, Wyoming (gilfing.shp)

description: This ArcView shapefile contains a polygon representation of numerous themes for the Gillette Coalfield. These themes are listed in the process steps. The purpose of this shapefile is to allow the users to perform multiple theme queries. This theme was created specifically for the National Coal Resource Assessment in the Northern Rocky Mountains and Great Plains Region
DOI: 10.5066/p95mr4o6
title: Overburden above the Wyodak-Anderson coal zone in the Gillette coalfield, Wyoming (gilovbg.shp)

description: This ArcView shapefile contains a polygon representation of overburden thickness above the Wyodak-Anderson coal zone in the area of Gillette coalfield, Wyoming. This theme was created specifically for the National Coal Resource Assessment in the Northern Rocky Mountains and Great Plains Region
DOI: 10.5066/p9ic8ikk
title: Green River Basin boundary, 1999 National Coal Resource Assessment (grbbndg.shp)

description: This ArcView shapefile contains a polygon representation of the Green River Basin boundary. This boundary is a part of the National Coal Resource Assessment of the Northern Rocky Mountain and Great Plains Fort Union Coal Resources Assessment Area. This boundary can be shown in relation to other relevant themes in the Gren River Basin.
DOI: 10.5066/p9z3btq6
title: Point of Rocks, Black Butte faults, Green River Basin, Wyoming (grbfltg.shp)

description: This ArcView shapefile contains a line representation of faults in a portion of the the Green River Basin. The fault data are part of the National Coal Resource Assessment of the Northern Rocky Mountain and Great Plains Fort Union Coal Resources Assessment Area. The faults can be shown in relation to other relevant themes of the Green River Basin.