cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.25109426
title: Supplementary Material for: Relationship between Helicobacter pylori eradication and Barrett’s esophagus elongation

description: Introduction:
Helicobacter pylori eradication therapy may worsen gastroesophageal reflux disease that is a significant risk factor for Barrett’s esophagus. However, the relationship between eradication therapy and Barrett’s esophagus remains controversial. This study evaluated the impact of Helicobacter pylori eradication on the lengthening of Barrett's esophagus.
Materials and Methods:
We conducted a retrospective analysis of consecutive patients who successfully underwent Helicobacter pylori eradication between 2004 and 2017. Endoscopic images obtained before and after eradication therapy were compared for Barrett's esophagus length according to the Prague C&M criteria and the presence of reflux esophagitis based on the Los Angeles classification. 
Results:
A total of 340 patients were analyzed (mean age: 66.9±12.9 years) for a median follow-up of 55 months (interquartile range: 29.8-89.3). At the initial endoscopic assessment, 187 patients (55%) had a hiatal hernia, and all patients had gastric atrophy (C-1: 2%, C-2,3: 47%, O-1,2,3: 51%). Reflux esophagitis was detected in 7 patients (2%) before eradication and in 21 patients (6%) afterward, which was a significant increase (P=0.007). Barrett's esophagus was identified in 69 patients (20%) before eradication, with a median length of C0M1. Elongation after treatment was observed in only 2 patients (0.6%). We observed no significant increase in either the prevalence (P=0.85) or the median length (P=0.5) of Barrett’s esophagus. 
Conclusions:
Only 0.6% of patients exhibited Barrett's esophagus lengthening after Helicobacter pylori eradication therapy, suggesting no significant impact of the treatment on the development or elongation of Barrett's esophagus.
DOI: 10.5281/zenodo.10590969
title: IMMERSE Codebook - Children and Educators
DOI: 10.5281/zenodo.10590970
title: IMMERSE Codebook - Children and Educators
DOI: 10.5281/zenodo.1404741
title: Survey Data Set Part 1 - Attitudes Towards Videos as a Documentation Option for Communication in Requirements Engineering

description: In 2017, we conducted an online survey to explore software professionals' attitudes towards videos as a documentation option for communication in requirements engineering. The survey covered the following topics:



	
Demographics
	
Attitude towards videos as a medium in RE including its strengths, weaknesses, opportunities, and threats
	
Current production and use of videos in RE, respectively the obstacles that prevent the production and use of videos



64 out of 106 software professionals from industry and academia completed the survey. The survey was implemented in LimeSurvey and distributed across several communication channels such as LinkedIn, ResearchGate, and a mailing list of a German RE professionals group.


This dataset includes the following files:



	
"Raw and analyzed data.xlsx" contains the raw and analyzed survey responses which are anonymized
	

		
This data includes demographics and attitude.
		
The data on video production and use are included in: Survey Data Set Part 2 - Attitudes Towards Videos as a Documentation Option for Communication in Requirements Engineering.
	
	
	
"Survey - Offline version.docx" contains the questions and possible answers of the survey
	
"Survey - Offline version.pdf" contains the questions and possible answers of the survey



This survey was designed, conducted, and analyzed by Oliver Karras (@KarrasOliver).
DOI: 10.5281/zenodo.1404742
title: Survey Data - Attitudes Towards Videos as a Documentation Option for Communication in Requirements Engineering

description: In 2017, we conducted an online survey to explore software professionals' attitudes towards videos as a documentation option for communication in requirements engineering. The survey covered the following topics:


	Demographics
	Attitude towards videos as a medium in RE including its strengths, weaknesses, opportunities, and threats


64 out of 106 software professionals from industry and academia completed the survey. The survey was implemented in LimeSurvey and distributed across several communication channels such as LinkedIn, ResearchGate, and a mailing list of a German RE professionals group.

This dataset includes the following files:


	"Raw and analyzed data.xlsx" contains the raw and analyzed survey responses which are anonymized
	"Survey - Offline version.docx" contains the questions and possible answers of the survey
	"Survey - Offline version.pdf" contains the questions and possible answers of the survey


This survey was designed, conducted, and analyzed by Oliver Karras (@KarrasOliver).
DOI: 10.5281/zenodo.3245770
title: Survey Data Set Part 1 - Attitudes Towards Videos as a Documentation Option for Communication in Requirements Engineering

description: In 2017, we conducted an online survey to explore software professionals' attitudes towards videos as a documentation option for communication in requirements engineering. The survey covered the following topics:



	
Demographics
	
Attitude towards videos as a medium in RE including its strengths, weaknesses, opportunities, and threats
	
Current production and use of videos in RE, respectively the obstacles that prevent the production and use of videos



64 out of 106 software professionals from industry and academia completed the survey. The survey was implemented in LimeSurvey and distributed across several communication channels such as LinkedIn, ResearchGate, and a mailing list of a German RE professionals group.


This dataset includes the following files:



	
"Raw and analyzed data.xlsx" contains the raw and analyzed survey responses which are anonymized
	

		
This data includes demographics and attitude.
		
The data on video production and use are included in: Survey Data Set Part 2 - Attitudes Towards Videos as a Documentation Option for Communication in Requirements Engineering.
	
	
	
"Survey - Offline version.docx" contains the questions and possible answers of the survey
	
"Survey - Offline version.pdf" contains the questions and possible answers of the survey



This survey was designed, conducted, and analyzed by Oliver Karras (@KarrasOliver).
DOI: 10.6084/m9.figshare.25109087
title: <b>PathoGraph: A Graph-Based M</b><b>ethod</b><b> for Standardized Representation of Pathology Knowledge</b>

description: This repository contains the open-source datasets and source code associated with the research project titled "PathoGraph: A Graph-Based Method for Standardized Representation of Pathology Knowledge", as described in our manuscript submitted to Nature Scientific Data. The materials are intended to promote transparency, reproducibility, and further research in the field of data and knowledge management.Contents:Language Specification: The file named "PathoML.owl" is the ontology specification of Pathology Markup Language.PathoGraph Representations: The XML files included in the folder "Representation_Examples" are exemplar PathoGraph representations including the ones representing HER2 immunophenotypes, the follicular pattern of papillary thyroid carcinoma, the histological subtyping process for a cervical slide, and the differential diagnosis for histolgical subtyping of lymphoma.Source Code: The files in the folder "Use_Case" are source codes of the two use cases, including the case of quantitative analysis of her2 expression and the one of automatic histologic subtyping.
DOI: 10.25824/redu/6lf1kf
title: Raw data Microlog paper.pdf

description: Data of micropollutants concentration and effluent quality and disinfection
DOI: 10.25824/redu/6jnoi5
title: Raw data of the article: total coliforms and Escherichia coli inactivation as surrogates of ozone pharmaceutical removal in secondary effluents: the microlog concept

description: Raw data used in the article
DOI: 10.5281/zenodo.10590828
title: Test data for F. Onyeogaziri project

description: Test data that can be used for ImageJ macros. These macros are submitted in connection with a research article.
DOI: 10.5281/zenodo.10590829
title: Test data for F. Onyeogaziri project

description: Test data that can be used for ImageJ macros. These macros are submitted in connection with a research article.
DOI: 10.5281/zenodo.10590181
title: Dataset: Enhanced Flow Variability and Morphological Changes through Individual Wood Placements on a Gravel Bed

description: This dataset includes ADV measurements (flow data) and bed characteristics of flume experiments conducted at the Nepf Environmental Fluid Mechanics Laboratory at the Massachusetts Institute of Technology (MIT).
DOI: 10.5281/zenodo.10590182
title: Dataset: Enhanced Flow Variability and Morphological Changes through Individual Wood Placements on a Gravel Bed

description: This dataset includes ADV measurements (flow data) and bed characteristics of flume experiments conducted at the Nepf Environmental Fluid Mechanics Laboratory at the Massachusetts Institute of Technology (MIT).
DOI: 10.34740/kaggle/dsv/7513056
title: Global Genomic Neurofibromatosis Neoplasia
DOI: 10.25824/redu/rpj2vg
title: Beatriz_Barbieri.xlsx

description: Date obtained from research
DOI: 10.25824/redu/etdens
title: Replication data for: wound fluid sampling methods and analysis of cytokine mRNA expression in ulcers from patients with diabetes mellitus

description: The development of diabetic foot ulcers is a common and severe complication of diabetes that can significantly affect quality of life. The physiological healing cascade does not progress tissue repair in diabetic foot ulcerations in a timely manner. Serum markers from foot ulcers have been used to characterize the healing process of the diabetic foot using various collection techniques. This study aimed to compare the use of cervical brushes and the Levine technique to collect wound fluid from foot ulcers of people with diabetes in order to determine the presence of cytokines.
DOI: 10.57745/sfbxlz
title: Fermentation monitoring_L. bulgaricus CFL1.txt

description: Fermentation parameters monitored on line in the bioreactor: optical density at 880 nm, NaOH consumption, medium conductivity, pH, temperature.
DOI: 10.57745/g1lo7q
title: Biological activity_L. bulgaricus CFL1_GOS-FOS-sucrose.txt

description: Culturability (plate counts), acidifying activity (Cinac system), viable, injured and dead cells (flow cytometry) after freezing, freeze-drying and 2 weeks storage at 28 °C
DOI: 10.57745/1qa1vf
title: Biochemical properties of L. bulgaricus CFL1 concentrates with GOS-FOS-sucrose_matrix by FTIR micro-spectroscopy.txt

description: FTIR micro-spectroscopy in aqueous environment of L. bulgaricus CFL1 cells after freezing, freeze-drying and 2 weeks storage at 28 °C
DOI: 10.57745/wyijk3
title: Membrane phospholipid oragnization of L. bulgaricus CFL1 concentrates with GOS-FOS-sucrose_by FTIR spectroscopy.txt

description: Membrane phospholipid organization during freezing: vsCH2 (2850cm-1), asPO2 (1220cm-1) and vH2O (2100-2250 cm-1) bands as a function of temperature after freezing and freeze-drying
DOI: 10.57745/ug7bma
title: Physical properties of L. bulgaricus CFL1 concentrates with GOS-FOS-sucrose_matrix.txt

description: Glass transition temperatures and water content of bacterial concentrates
DOI: 10.17632/ynj8pycmgt.1
title: Telematic survey (Google Forms) "Toys with a purpose: values ​​of inclusion and diversity in brands aimed at children"

description: Telematic survey (Google Forms) "Toys with a purpose: values ​​of inclusion and diversity in brands aimed at children"
DOI: 10.25824/redu/6jx5hz
title: Acolhimento das crianças e famílias no retorno presencial

description: O banco de dados contem transcrições dos grupos focais, dos encontros do grupo de estudos.
DOI: 10.5281/zenodo.10526972
title: Phenomenological modeling of the stress-free two-way shape-memory effect in semi-crystalline networks: formulation, numerical simulation, and experimental validation

description: This dataset comes from the following paper:

Matteo Arricca, Nicoletta Inverardi, Stefano Pandini, Maurizio Toselli, Massimo Messori, Ferdinando Auricchio, Giulia Scalet, Phenomenological modeling of the stress-free two-way shape-memory effect in semi-crystalline networks: Formulation, numerical simulation, and experimental validation, European Journal of Mechanics - A/Solids, 105245, 2024, https://doi.org/10.1016/j.euromechsol.2024.105245

It contains:



"Notes.pdf" describing all the files uploaded

.txt files of the experimental data
DOI: 10.5281/zenodo.10526973
title: Phenomenological modeling of the stress-free two-way shape-memory effect in semi-crystalline networks: formulation, numerical simulation, and experimental validation

description: This dataset comes from the following paper:

Matteo Arricca, Nicoletta Inverardi, Stefano Pandini, Maurizio Toselli, Massimo Messori, Ferdinando Auricchio, Giulia Scalet, Phenomenological modeling of the stress-free two-way shape-memory effect in semi-crystalline networks: Formulation, numerical simulation, and experimental validation, European Journal of Mechanics - A/Solids, 105245, 2024, https://doi.org/10.1016/j.euromechsol.2024.105245

It contains:



"Notes.pdf" describing all the files uploaded

.txt files of the experimental data
DOI: 10.5281/zenodo.10587952
title: CWTS Leiden Ranking Open Edition 2023 - Results

description: This data set contains the indicators made available in the Open Edition of the CWTS Leiden Ranking 2023. The Leiden Ranking Open Edition 2023 is based on data from OpenAlex. It provides indicators of scientific impact, collaboration, and open access publishing.
DOI: 10.5281/zenodo.10587951
title: CWTS Leiden Ranking Open Edition 2023 - Results

description: This data set contains the indicators made available in the Open Edition of the CWTS Leiden Ranking 2023. The Leiden Ranking Open Edition 2023 is based on data from OpenAlex. It provides indicators of scientific impact, collaboration, and open access publishing.
DOI: 10.5281/zenodo.10588482
title: Extreme Rainfall-Producing Echo Training processes during two landfalling Typhoons in East China

description: The S band radar and surface observation data for the research of extreme rainfall-producing echo training processes during two landfalling typhoons in East China
DOI: 10.5281/zenodo.10519058
title: Data used for "Assessing spatiotemporal change in coral reef social-ecological systems"

description: Coral reef data used for Eason, T. and Garmestani, A. S., Assessing spatiotemporal change in coral reef ecosystems. Under Review (Ecology and Society)

The raw data was gathered from a coral bleaching study performed by Sully et al (2019).  In our current study, we used data spanning from 2003-2016.  We amalgamated station names and associated data when the station locations (latitude and longitude) remained essentially the same, but were named slightly different from year to year.      

Reference:  Sully S, Burkepile DE, Donovan MK, Hodgson G, van Woesik R. A global analysis of coral bleaching over the past two decades. Nat Commun. 2019;10(1):1264
DOI: 10.5281/zenodo.6394620
title: Data used for "Assessing spatiotemporal change in coral reef social-ecological systems"

description: Coral reef data used for Eason, T. and Garmestani, A. S., Assessing spatiotemporal change in coral reef ecosystems. Under Review (Ecology and Society)

The raw data was gathered from a coral bleaching study performed by Sully et al (2019).  In our current study, we used data spanning from 2003-2016.  We amalgamated station names and associated data when the station locations (latitude and longitude) remained essentially the same, but were named slightly different from year to year.      

Reference:  Sully S, Burkepile DE, Donovan MK, Hodgson G, van Woesik R. A global analysis of coral bleaching over the past two decades. Nat Commun. 2019;10(1):1264
DOI: 10.5281/zenodo.6394621
title: Coral Reef Data

description: Global coral reef data from 2003-2016 used for Eason, T<strong>.</strong> and Garmestani, A. S., Assessing environmental change in coral reef ecosystems. Under Review (Royal Society of Open Science). The data was culled from publicly accessible data gathered for a global bleaching study performed by Sully et al. 2019. The full dataset is available at https://github.com/InstituteForGlobalEcology/Coral-bleaching-a-global-analysis-of-the-past-two-decades. Reference: Sully S, Burkepile DE, Donovan MK, Hodgson G, van Woesik R. A global analysis of coral bleaching over the past two decades. Nat Commun. 2019;10(1):1264
DOI: 10.25375/uct.24586425
title: Software code for PhD thesis by Riham Ahmed titled "Mathematical modelling of growth factor-induced cell migration in 3D engineered matrices"

description: Matlab code for mathematical modelling of mechanically, chemically and chemo-mechanically induced collective cell migration on planar 2D substrates and in 3D matrices as part of the PhD thesis "Mathematical modelling of growth factor-induced cell migration in 3D engineered matrices" by Riham Ahmed.CHAPTER 2File: Code for Chapter 2.zipThree archives containing Matlab code for simulation with different cases.Displacement with uniform substrate.zipDisplacement with variable substrate elasticity.zipDisplacement with variable substrate thickness.zipCHAPTER 3File: Code for Chapter 3.zipTwo archives containing Matlab code for simulation with different cases.Displacement for collective cells.zipDisplacement for one motile cell.zipCHAPTER 4File: Code for Chapter 4.zipFour archives containing Matlab code for simulation with different cases.Mechanically induced cell migration with uniform ECM.zipMechanically induced cell migration with variable ECM elasticity.zipChemo-mechanically induced cell migration with uniform ECM.zipChemo-mechanically induced cell migration with variable ECM.zipDetailed description is provided in file 'Code description'.
DOI: 10.25375/uct.24586425.v1
title: Software code for PhD thesis by Riham Ahmed titled "Mathematical modelling of growth factor-induced cell migration in 3D engineered matrices"

description: Matlab code for mathematical modelling of mechanically, chemically and chemo-mechanically induced collective cell migration on planar 2D substrates and in 3D matrices as part of the PhD thesis "Mathematical modelling of growth factor-induced cell migration in 3D engineered matrices" by Riham Ahmed.CHAPTER 2File: Code for Chapter 2.zipThree archives containing Matlab code for simulation with different cases.Displacement with uniform substrate.zipDisplacement with variable substrate elasticity.zipDisplacement with variable substrate thickness.zipCHAPTER 3File: Code for Chapter 3.zipTwo archives containing Matlab code for simulation with different cases.Displacement for collective cells.zipDisplacement for one motile cell.zipCHAPTER 4File: Code for Chapter 4.zipFour archives containing Matlab code for simulation with different cases.Mechanically induced cell migration with uniform ECM.zipMechanically induced cell migration with variable ECM elasticity.zipChemo-mechanically induced cell migration with uniform ECM.zipChemo-mechanically induced cell migration with variable ECM.zipDetailed description is provided in file 'Code description'.
DOI: 10.6084/m9.figshare.24967677
title: Data for manuscript "Exploring van der Waals materials with high anisotropy: geometrical and optical approaches"

description: Data for manuscript "Exploring van der Waals materials with high anisotropy: geometrical and optical approaches"
DOI: 10.6084/m9.figshare.20178851
title: IIMPACT World+ Midpoint of 59 gas heating to reverse cycle air conditioning upgrades

description: Weight of each appliance, the operational energy used per heating upgrade and the IMPACT 2002+ results by life cycle stage and impact categorie
DOI: 10.6084/m9.figshare.20178851.v1
title: IIMPACT World+ Midpoint of 59 gas heating to reverse cycle air conditioning upgrades

description: Weight of each appliance, the operational energy used per heating upgrade and the IMPACT 2002+ results by life cycle stage and impact categorie
DOI: 10.5281/zenodo.10590127
title: 1D_brains_livers_blanks_and_QC
DOI: 10.5281/zenodo.10590128
title: 1D_brains_livers_blanks_and_QC
DOI: 10.18112/openneuro.ds004944.v1.0.0
title: Dataset of BCI2000-compatible intraoperative ECoG with neuromorphic encoding
DOI: 10.15472/l1vnio
title: Listado de las especies de Cantharidae (Coleoptera: Elateroidea) de Colombia

description: Este recurso presenta el listado de las especies de la familia Cantharidae (Coleoptera: Elateroidea) registradas para el territorio colombiano. Se listan cuatro subfamilias, 3 tribus, 13 géneros, 121 especies y 8 subespecies. 110 taxones (incluyendo todas las subespecies) se consideran endémicos. La información ha sido recopilada a partir de información disponible en los principales catálogos del grupo y en literatura reciente. Se incluyen las referencias de todas las descripciones originales y de los trabajos de revisión taxonómica o que incluyan claves de identificación. Algunos nombres ausentes o escritos equivocadamente en otras bases de datos son incluidos en esta lista y escritos correctamente según su aceptación actual.
DOI: 10.34740/kaggle/dsv/7513229
title: 2021 World Population (updated daily)
DOI: 10.5281/zenodo.10591110
title: The Czech Constitutional Court Dataset

description: The article at hand introduces a comprehensive foundational dataset on the Czech Constitutional Court spanning from its inception in 1993 to 2023. The dataset includes metadata on all decisions, full text corpus, and additional background data on judges and law clerks, filling a gap in high-quality datasets for empirical legal research in the Central and Eastern European region. As one of the first datasets in the CEE region, it has the potential to catalyze similar research efforts and contribute to methodologically rigorous empirical legal research in a region of increasing European significance.

All the .R scripts for replication are available at the author's Github. The attached codebook explains all the variables and datasets includuded in the CCC dataset.
DOI: 10.5281/zenodo.7758507
title: UAE native macroalgae

description: UAE-native macroalgal genomes
DOI: 10.5281/zenodo.7758508
title: UAE native macroalgae

description: UAE-native macroalgal genomes
DOI: 10.5281/zenodo.10591419
title: IMMERSE YC Dataset
DOI: 10.5281/zenodo.10591426
title: IMMERSE POC Dataset
DOI: 10.34740/kaggle/dsv/7513251
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.5281/zenodo.10590107
title: 1D_livers
DOI: 10.5281/zenodo.10590108
title: 1D_livers
DOI: 10.5281/zenodo.10589996
title: 1D_brains_livers
DOI: 10.5281/zenodo.10589997
title: 1D_brains_livers
DOI: 10.5281/zenodo.10591432
title: IMMERSE OC Dataset
DOI: 10.5281/zenodo.10591425
title: Supplementary Information "Key drivers and pressures of global water scarcity hotspots"

description: Supplementary information of "Key drivers and pressures of global water scarcity hotspots".



Supplementary table A - SCOPUS search strings

Supplementary table B - DPSIR definitions

Supplementary table C - Data resources

Supplementary figures D - Lineplots of historical data analysis

Supplementary table E - DPSIR case study results

Supplementary figures F - Circular barplots DPSIR analysis per hotspot
DOI: 10.5281/zenodo.8360023
title: Supplementary Information "Key drivers and pressures of global water scarcity hotspots"

description: Supplementary information of "Key drivers and pressures of global water scarcity hotspots".



Supplementary table A - SCOPUS search strings

Supplementary table B - DPSIR definitions

Supplementary table C - Data resources

Supplementary figures D - Lineplots of historical data analysis

Supplementary table E - DPSIR case study results

Supplementary figures F - Circular barplots DPSIR analysis per hotspot