cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.13213211.v1
title: Additional file 1 of SVFX: a machine learning framework to quantify the pathogenicity of structural variants

description: Additional file 1. Supplementary datasets.
DOI: 10.6084/m9.figshare.13213211
title: Additional file 1 of SVFX: a machine learning framework to quantify the pathogenicity of structural variants

description: Additional file 1. Supplementary datasets.
DOI: 10.6084/m9.figshare.13212308.v1
title: Root-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type data

description: Data related to Keller et al. 2020 Ecology Letters. Root-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type.<br>oot-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type<br>
DOI: 10.6084/m9.figshare.13212308
title: Root-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type data

description: Data related to Keller et al. 2020 Ecology Letters. Root-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type.<br>oot-derived inputs are major contributors to soil carbon in temperate forests, but vary by mycorrhizal type<br>
DOI: 10.6084/m9.figshare.13212821
title: Supplementary Material for a bibliometric study about the lean methodology

description: This material presents the complementary literature base used to characterize the studies undertaken on a lean methodology, using the reference four variations of lean: lean manufacturing, lean production, lean implementation, and lean thinking, for the period 2006 to 2015, from International Journal of Operations and Production Management, Journal of Operations Management, International Journal of Production Research, and Production and Operations Management.
DOI: 10.6084/m9.figshare.13212821.v1
title: Supplementary Material for a bibliometric study about the lean methodology

description: This material presents the complementary literature base used to characterize the studies undertaken on a lean methodology, using the reference four variations of lean: lean manufacturing, lean production, lean implementation, and lean thinking, for the period 2006 to 2015, from International Journal of Operations and Production Management, Journal of Operations Management, International Journal of Production Research, and Production and Operations Management.
DOI: 10.6084/m9.figshare.13211992.v1
title: Additional file 2 of Massive gene presence-absence variation shapes an open pan-genome in the Mediterranean mussel

description: Additional file 2. Large supplementary tables. This file includes Table S1, Table S3, Table S4, Table S6, Table S16, Table S17, Table S18, Table S19, Table S20, Table S21, Table S22, Table S23, Table S24, Table S25, Table S26, Table S27, Table S28, Table S29, Table S30, Table S31, Table S32, Table S33, Table S34, Table S40, Table S52, Table S53, Table S54, Table S55, Table S56 and Table S57.
DOI: 10.15468/4c6dsx
title: Taxonomic revision of Russula subsection Amoeninae from South Korea

description: This dataset contains the digitized treatments in Plazi based on the original journal article Wisitrassameewong, Komsit, Park, Myung Soo, Lee, Hyun, Ghosh, Aniket, Das, Kanad, Buyck, Bart, Looney, Brian P., Cabon, Miroslav, Adamcik, Slavomir, Kim, Changmu, Kim, Chang Sun, Lim, Young Woon (2020): Taxonomic revision of Russula subsection Amoeninae from South Korea. MycoKeys 75: 1-29, DOI: http://dx.doi.org/10.3897/mycokeys.75.53673, URL: http://dx.doi.org/10.3897/mycokeys.75.53673
DOI: 10.15468/c5328z
title: Five new additions to the genus Spathaspora (Saccharomycetales, Debaryomycetaceae) from southwest China

description: This dataset contains the digitized treatments in Plazi based on the original journal article Lv, Shi-Long, Chai, Chun-Yue, Wang, Yun, Yan, Zhen-Li, Hui, Feng-Li (2020): Five new additions to the genus Spathaspora (Saccharomycetales, Debaryomycetaceae) from southwest China. MycoKeys 75: 31-49, DOI: http://dx.doi.org/10.3897/mycokeys.75.57192, URL: http://dx.doi.org/10.3897/mycokeys.75.57192
DOI: 10.15468/zdu5un
title: A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Selz, Oliver M., Doenz, Carmela J., Vonlanthen, Pascal, Seehausen, Ole (2020): A taxonomic revision of the whitefish of lakes Brienz and Thun, Switzerland, with descriptions of four new species (Teleostei, Coregonidae). ZooKeys 989: 79-162, DOI: http://dx.doi.org/10.3897/zookeys.989.32822, URL: http://dx.doi.org/10.3897/zookeys.989.32822
DOI: 10.15468/yccqgm
title: A new species of Pseudosinella Schaeffer, 1897 (Collembola, Entomobryidae) from Altamira Caves (Cantabria, Spain)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Baquero, Enrique, Jordana, Rafael, Labrada, Lucia, Luque, Carlos G. (2020): A new species of Pseudosinella Schaeffer, 1897 (Collembola, Entomobryidae) from Altamira Caves (Cantabria, Spain). ZooKeys 989: 39-54, DOI: http://dx.doi.org/10.3897/zookeys.989.52361, URL: http://dx.doi.org/10.3897/zookeys.989.52361
DOI: 10.15468/ztgcjt
title: Morphology and phylogenetic analysis of five deep-sea golden gorgonians (Cnidaria, Octocorallia, Chrysogorgiidae) in the Western Pacific Ocean, with the description of a new species

description: This dataset contains the digitized treatments in Plazi based on the original journal article Xu, Yu, Zhan, Zifeng, Xu, Kuidong (2020): Morphology and phylogenetic analysis of five deep-sea golden gorgonians (Cnidaria, Octocorallia, Chrysogorgiidae) in the Western Pacific Ocean, with the description of a new species. ZooKeys 989: 1-37, DOI: http://dx.doi.org/10.3897/zookeys.989.53104, URL: http://dx.doi.org/10.3897/zookeys.989.53104
DOI: 10.15468/atcdck
title: New species and records of Cloeodes Traver, 1938 (Ephemeroptera, Baetidae) from Costa Rica

description: This dataset contains the digitized treatments in Plazi based on the original journal article Vasquez-Bolanos, Oscar, Sibaja-Araya, Fabian, Guevara-Mora, Meyer (2020): New species and records of Cloeodes Traver, 1938 (Ephemeroptera, Baetidae) from Costa Rica. ZooKeys 989: 55-72, DOI: http://dx.doi.org/10.3897/zookeys.989.53018, URL: http://dx.doi.org/10.3897/zookeys.989.53018
DOI: 10.15468/w3gwf8
title: A third species of the rarely collected Oriental hoverfly genus Furcantenna Cheng, 2008 (Diptera, Syrphidae, Microdontinae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Reemer, Menno (2020): A third species of the rarely collected Oriental hoverfly genus Furcantenna Cheng, 2008 (Diptera, Syrphidae, Microdontinae). ZooKeys 989: 73-78, DOI: http://dx.doi.org/10.3897/zookeys.989.57087, URL: http://dx.doi.org/10.3897/zookeys.989.57087
DOI: 10.17632/xpnfn3hhzk.1
title: Data for: The Alpehue geyser field, Sollipulli Volcano, Chile

description: Water geochemistry: Major elements, Trace elements, Oxygen and deuterium isotopes
DOI: 10.17632/5rzkt45ddg.1
title: The Alpehue geyser field, Sollipulli Volcano, Chile

description: Water geochemistry (major elements, trace elements, isotopes)
DOI: 10.24431/rw1k475
title: Climate model projections of extreme physical conditions in Alaskan waters, 2006-2080

description: The project provides information on the probable frequency and magnitude of extreme physical oceanographic events in Alaskan waters during the next 50 years. The analysis will consider separately three different habitats: the Gulf of Alaska, southeast Bering Sea shelf and Aleutian Islands. The individual parameters of interest for each region will be those that have been identified, or have been postulated, to be crucial to marine ecosystem productivity and composition. The projections will be based on the simulations carried out with global climate models for the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (AR5). A multi-model ensemble approach will be used towards the development of robust estimates of probability density functions (pdfs) on decadal time scales. The project builds on the investigators’ previous expertise in ecosystem/climate studies and the evaluation of climate models for the North Pacific and high-latitude regions.
DOI: 10.24431/rw1k476
title: Climate model projections of extreme physical conditions in Alaskan waters, 2006-2080

description: The project provides information on the probable frequency and magnitude of extreme physical oceanographic events in Alaskan waters during the next 50 years. The analysis will consider separately three different habitats: the Gulf of Alaska, southeast Bering Sea shelf and Aleutian Islands. The individual parameters of interest for each region will be those that have been identified, or have been postulated, to be crucial to marine ecosystem productivity and composition. The projections will be based on the simulations carried out with global climate models for the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (AR5). A multi-model ensemble approach will be used towards the development of robust estimates of probability density functions (pdfs) on decadal time scales. The project builds on the investigators’ previous expertise in ecosystem/climate studies and the evaluation of climate models for the North Pacific and high-latitude regions.
DOI: 10.24431/rw1k477
title: Climate model projections of extreme physical conditions in Alaskan waters, 2006-2080

description: The project provides information on the probable frequency and magnitude of extreme physical oceanographic events in Alaskan waters during the next 50 years. The analysis will consider separately three different habitats: the Gulf of Alaska, southeast Bering Sea shelf and Aleutian Islands. The individual parameters of interest for each region will be those that have been identified, or have been postulated, to be crucial to marine ecosystem productivity and composition. The projections will be based on the simulations carried out with global climate models for the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (AR5). A multi-model ensemble approach will be used towards the development of robust estimates of probability density functions (pdfs) on decadal time scales. The project builds on the investigators’ previous expertise in ecosystem/climate studies and the evaluation of climate models for the North Pacific and high-latitude regions.
DOI: 10.24431/rw1k478
title: Climate model projections of extreme physical conditions in Alaskan waters, 2006-2080

description: The project provides information on the probable frequency and magnitude of extreme physical oceanographic events in Alaskan waters during the next 50 years. The analysis will consider separately three different habitats: the Gulf of Alaska, southeast Bering Sea shelf and Aleutian Islands. The individual parameters of interest for each region will be those that have been identified, or have been postulated, to be crucial to marine ecosystem productivity and composition. The projections will be based on the simulations carried out with global climate models for the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (AR5). A multi-model ensemble approach will be used towards the development of robust estimates of probability density functions (pdfs) on decadal time scales. The project builds on the investigators’ previous expertise in ecosystem/climate studies and the evaluation of climate models for the North Pacific and high-latitude regions.
DOI: 10.5281/zenodo.4265789
title: Experimental Study on Wave–Ice Interaction using Freely Floating Synthetic Ice Floes

description: Experimental data See manuscript below for further details: Experimental Study on Wave–Ice Interaction using Freely Floating Synthetic Ice Floes (in review)
DOI: 10.17632/xrt4vj8ttv.1
title: Data for: Shocks and the spatial distribution of economic activity: The role of institutions

description: Data and replication instructions for "Shocks and the spatial distribution of economic activity: The role of institutions."
DOI: 10.5281/zenodo.4265809
title: Multicamera calibration for multiobject tracker for mice

description: Noninvasive tracking of all individuals in unmarked mouse group using multicamera fusion and deep learning
DOI: 10.5281/zenodo.4265808
title: Multicamera calibration for multiobject tracker for mice

description: Noninvasive tracking of all individuals in unmarked mouse group using multicamera fusion and deep learning
DOI: 10.21227/my8q-zh50
title: Simple Solution

description: Abstract
DOI: 10.5281/zenodo.4265824
title: Linear vs. nonlinear hedging rules for reservoir optimization operation

description: Data used in PD reservoir operation
DOI: 10.5281/zenodo.4265828
title: Supplementary Material for "Route Efficiency Assessment and Review of the Synthesis of β-Nucleosides via N-Glycosylation of Nucleobases"

description: This is the external Supplementary Material for our publication "Route Efficiency Assessment and Review of the Synthesis of β-Nucleosides via <em>N</em>-Glycosylation of Nucleobases", which has been released as a preprint on <em>ChemRxiv </em>(https://doi.org/10.26434/chemrxiv.12753413.v1). The files in this record are additionally available from <em>ChemRxiv</em>.
DOI: 10.5281/zenodo.4265827
title: Supplementary Material for "Route Efficiency Assessment and Review of the Synthesis of β-Nucleosides via N-Glycosylation of Nucleobases"

description: This is the external Supplementary Material for our publication "Route Efficiency Assessment and Review of the Synthesis of β-Nucleosides via <em>N</em>-Glycosylation of Nucleobases", which has been released as a preprint on <em>ChemRxiv </em>(https://doi.org/10.26434/chemrxiv.12753413.v1). The files in this record are additionally available from <em>ChemRxiv</em>.
DOI: 10.6084/m9.figshare.13213523
title: Supplementary Material for: Convergence of Olfactory Inputs within the Central Nervous System of a Cartilaginous and a Bony Fish: An Anatomical Indicator of Olfactory Sensitivity

description: The volume of the olfactory bulbs (OBs) relative to the brain has been used previously as a proxy for olfactory capabilities in many vertebrate taxa, including fishes. Although this gross approach has predictive power, a more accurate assessment of the number of afferent olfactory inputs and the convergence of this information at the level of the telencephalon is critical to our understanding of the role of olfaction in the behaviour of fishes. In this study, we used transmission electron microscopy to assess the number of first-order axons within the olfactory nerve (ON) and the number of second-order axons in the olfactory peduncle (OP) in established model species within cartilaginous (brownbanded bamboo shark, <i>Chiloscyllium punctatum</i> [CP]) and bony (common goldfish, <i>Carassius auratus</i> [CA]) fishes. The total number of axons varied from a mean of 18.12 ± 7.50 million in the ON to a mean of 0.38 ± 0.21 million in the OP of CP, versus 0.48 ± 0.16 million in the ON and 0.09 ± 0.02 million in the OP of CA. This resulted in a convergence ratio of approximately 50:1 and 5:1, respectively, for these two species. Based on astroglial ensheathing, axon type (unmyelinated [UM] and myelinated [M]) and axon size, we found no differentiated tracts in the OP of CP, whereas a lateral and a medial tract (both of which could be subdivided into two bundles or areas) were identified for CA, as previously described. Linear regression analyses revealed significant differences not only in axon density between species and locations (nerves and peduncles), but also in axon type and axon diameter (<i>p</i> &lt; 0.05). However, UM axon diameter was larger in the OPs than in the nerve in both species (<i>p</i> = 0.005), with no significant differences in UM axon diameter in the ON (<i>p</i> = 0.06) between species. This study provides an in-depth analysis of the neuroanatomical organisation of the ascending olfactory pathway in two fish taxa and a quantitative anatomical comparison of the summation of olfactory information. Our results support the assertion that relative OB volume is a good indicator of the level of olfactory input and thereby a proxy for olfactory capabilities.
DOI: 10.6084/m9.figshare.13213523.v1
title: Supplementary Material for: Convergence of Olfactory Inputs within the Central Nervous System of a Cartilaginous and a Bony Fish: An Anatomical Indicator of Olfactory Sensitivity

description: The volume of the olfactory bulbs (OBs) relative to the brain has been used previously as a proxy for olfactory capabilities in many vertebrate taxa, including fishes. Although this gross approach has predictive power, a more accurate assessment of the number of afferent olfactory inputs and the convergence of this information at the level of the telencephalon is critical to our understanding of the role of olfaction in the behaviour of fishes. In this study, we used transmission electron microscopy to assess the number of first-order axons within the olfactory nerve (ON) and the number of second-order axons in the olfactory peduncle (OP) in established model species within cartilaginous (brownbanded bamboo shark, <i>Chiloscyllium punctatum</i> [CP]) and bony (common goldfish, <i>Carassius auratus</i> [CA]) fishes. The total number of axons varied from a mean of 18.12 ± 7.50 million in the ON to a mean of 0.38 ± 0.21 million in the OP of CP, versus 0.48 ± 0.16 million in the ON and 0.09 ± 0.02 million in the OP of CA. This resulted in a convergence ratio of approximately 50:1 and 5:1, respectively, for these two species. Based on astroglial ensheathing, axon type (unmyelinated [UM] and myelinated [M]) and axon size, we found no differentiated tracts in the OP of CP, whereas a lateral and a medial tract (both of which could be subdivided into two bundles or areas) were identified for CA, as previously described. Linear regression analyses revealed significant differences not only in axon density between species and locations (nerves and peduncles), but also in axon type and axon diameter (<i>p</i> &lt; 0.05). However, UM axon diameter was larger in the OPs than in the nerve in both species (<i>p</i> = 0.005), with no significant differences in UM axon diameter in the ON (<i>p</i> = 0.06) between species. This study provides an in-depth analysis of the neuroanatomical organisation of the ascending olfactory pathway in two fish taxa and a quantitative anatomical comparison of the summation of olfactory information. Our results support the assertion that relative OB volume is a good indicator of the level of olfactory input and thereby a proxy for olfactory capabilities.
DOI: 10.5281/zenodo.4265855
title: The Prospects of the Two-day Cardiopulmonary Exercise Test (CPET) in ME/CFS Patients: A Meta-Analysis

description: <strong>Supplementary Tables and Figure for "The Prospects of the Two-day Cardiopulmonary Exercise Test (CPET) in ME/CFS Patients: A Meta-Analysis"</strong>
DOI: 10.5281/zenodo.4265854
title: The Prospects of the Two-day Cardiopulmonary Exercise Test (CPET) in ME/CFS Patients: A Meta-Analysis

description: <strong>Supplementary Tables and Figure for "The Prospects of the Two-day Cardiopulmonary Exercise Test (CPET) in ME/CFS Patients: A Meta-Analysis"</strong>
DOI: 10.6084/m9.figshare.13213532
title: Supplementary Material for: The Growth Kinetics of Collision Nodal Metastasis from Medullary and Papillary Thyroid Carcinomas: A Case Report

description: <b><i>Introduction:</i></b> The collision of medullary (MTC) and papillary thyroid carcinoma (PTC) in the same cervical lymph node can occur, but its growth kinetics has not been reported. <b><i>Case Presentation:</i></b> We report a 27-year-old male patient who had collision nodal metastases from PTC and sporadic MTC in the central compartment. This was treated with total thyroidectomy and central neck dissection. The collision nodal metastasis persisted and presented with a single sonographically enlarging central compartmental lymph node postoperatively. The volume of the collision nodal metastasis increased from 226 to 507 mm<sup>3</sup> over the first 8 months, from 507 to 572 mm<sup>3</sup> over the next 6 months, and from 572 to 762 mm<sup>3</sup> over the next 31 months. The calcitonin and carcinoembryonic antigen (CEA) fluctuated in the first 19 months followed by a steady increase at a doubling time of 1.97 and 8.42 years, respectively. Unstimulated thyroglobulin remained at 0.2 ng/mL or lower during the same period while thyrotropin (TSH) was not suppressed. Revision central neck dissection performed 4.5 years later resulted in undetectable serum calcitonin, CEA of 2 ng/mL, and thyroglobulin of 0.1 ng/mL from a preoperative calcitonin of 212 ng/L, CEA of 10 ng/mL, and thyroglobulin of 0.2 ng/mL. Further structural imaging 13.5 months later revealed no evidence of disease. <b><i>Discussion:</i></b> The growth kinetics of collision nodal metastasis from PTC and MTC can be similar to conventional PTC and MTC. Furthermore, the growth rate of such collision nodal metastases can be slow. Guided by tumor marker doubling time and regular structural imaging, surgical salvage performed after a period of active surveillance may still result in biochemical and structural remission.
DOI: 10.6084/m9.figshare.13213532.v1
title: Supplementary Material for: The Growth Kinetics of Collision Nodal Metastasis from Medullary and Papillary Thyroid Carcinomas: A Case Report

description: <b><i>Introduction:</i></b> The collision of medullary (MTC) and papillary thyroid carcinoma (PTC) in the same cervical lymph node can occur, but its growth kinetics has not been reported. <b><i>Case Presentation:</i></b> We report a 27-year-old male patient who had collision nodal metastases from PTC and sporadic MTC in the central compartment. This was treated with total thyroidectomy and central neck dissection. The collision nodal metastasis persisted and presented with a single sonographically enlarging central compartmental lymph node postoperatively. The volume of the collision nodal metastasis increased from 226 to 507 mm<sup>3</sup> over the first 8 months, from 507 to 572 mm<sup>3</sup> over the next 6 months, and from 572 to 762 mm<sup>3</sup> over the next 31 months. The calcitonin and carcinoembryonic antigen (CEA) fluctuated in the first 19 months followed by a steady increase at a doubling time of 1.97 and 8.42 years, respectively. Unstimulated thyroglobulin remained at 0.2 ng/mL or lower during the same period while thyrotropin (TSH) was not suppressed. Revision central neck dissection performed 4.5 years later resulted in undetectable serum calcitonin, CEA of 2 ng/mL, and thyroglobulin of 0.1 ng/mL from a preoperative calcitonin of 212 ng/L, CEA of 10 ng/mL, and thyroglobulin of 0.2 ng/mL. Further structural imaging 13.5 months later revealed no evidence of disease. <b><i>Discussion:</i></b> The growth kinetics of collision nodal metastasis from PTC and MTC can be similar to conventional PTC and MTC. Furthermore, the growth rate of such collision nodal metastases can be slow. Guided by tumor marker doubling time and regular structural imaging, surgical salvage performed after a period of active surveillance may still result in biochemical and structural remission.