cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/4kj-cpt-wkq
title: Terebratula Müller, 1776

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/e9n-7l9-9m3
title: Muscovite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/g06-7fk-yrk
title: Libethenite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/qfg-y71-btp
title: Topaz

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/m0b-mb6-8t7
title: Grossular

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/q5a-bfg-lye
title: Hemimorphite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/1x0-l3d-mcy
title: Almandine

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/572-1b8-9jy
title: Grossular

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/a56-cae-mjc
title: †Galerites (Galerites) vulgaris

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.3535/zbf-d25-29z
title: Labradorite

description: Digital Specimen for the physical specimen hosted at Tallinn University of Technology.
DOI: 10.6084/m9.figshare.27328598
title: Genetically predicted inflammatory cytokine levels and risk of retinitis pigmentosa

description: This study aims to estimate the potential causal relationship between genetically predicted levels of inflammatory cytokine and retinitis pigmentosa (RP) by performing Mendelian randomization (MR). Single nucleotide polymorphisms (SNPs) were identified as instrumental variables (IVs) from publicly available genome-wide association study datasets. Inverse-variance weighted (IVW), MR-Egger, weighted median, simple mode, and weighted mode methods were applied in this MR analysis. IVW and MR-Egger were used to confirm heterogeneity and pleiotropy of identified IVs. Leave-one-SNP-out analysis was used to identify SNPs with potential impact. IVW results revealed that elevated levels of Tumor Necrosis Factor Alpha (TNF-α), Macrophage Inflammatory Protein-1a (MIP1a), and Monokine Induced by Gamma Interferon (MIG) were associated with higher RP risk (OR = 2.358, <i>p</i> = 0.050; OR = 2.583, <i>p</i> = 0.013; OR = 1.851, <i>p</i> = 0.015), while elevated levels of Interleukin-16 (IL-16) were associated with reduced RP risk (OR = 0.723, <i>p</i> = 0.019). The results of heterogeneity and pleiotropy (<i>p</i> &gt; 0.05) confirmed there was no pleiotropy and heterogeneity in our IVW analysis. The association of TNF-α, MIP1a, MIG and IL-16 with RP from sensitivity analyses using these two sets of restricted IVs remained stable. Our study provides evidence of potential causal relationships between several circulating cytokine levels and RP. Elevated levels of TNF-α, MIP1a, and MIG are associated with a higher risk of RP, while elevated levels of IL-16 are associated with a lower risk of RP. These cytokines may be novel biomarkers and therapeutic targets for RP.
DOI: 10.6084/m9.figshare.27328598.v1
title: Genetically predicted inflammatory cytokine levels and risk of retinitis pigmentosa

description: This study aims to estimate the potential causal relationship between genetically predicted levels of inflammatory cytokine and retinitis pigmentosa (RP) by performing Mendelian randomization (MR). Single nucleotide polymorphisms (SNPs) were identified as instrumental variables (IVs) from publicly available genome-wide association study datasets. Inverse-variance weighted (IVW), MR-Egger, weighted median, simple mode, and weighted mode methods were applied in this MR analysis. IVW and MR-Egger were used to confirm heterogeneity and pleiotropy of identified IVs. Leave-one-SNP-out analysis was used to identify SNPs with potential impact. IVW results revealed that elevated levels of Tumor Necrosis Factor Alpha (TNF-α), Macrophage Inflammatory Protein-1a (MIP1a), and Monokine Induced by Gamma Interferon (MIG) were associated with higher RP risk (OR = 2.358, <i>p</i> = 0.050; OR = 2.583, <i>p</i> = 0.013; OR = 1.851, <i>p</i> = 0.015), while elevated levels of Interleukin-16 (IL-16) were associated with reduced RP risk (OR = 0.723, <i>p</i> = 0.019). The results of heterogeneity and pleiotropy (<i>p</i> &gt; 0.05) confirmed there was no pleiotropy and heterogeneity in our IVW analysis. The association of TNF-α, MIP1a, MIG and IL-16 with RP from sensitivity analyses using these two sets of restricted IVs remained stable. Our study provides evidence of potential causal relationships between several circulating cytokine levels and RP. Elevated levels of TNF-α, MIP1a, and MIG are associated with a higher risk of RP, while elevated levels of IL-16 are associated with a lower risk of RP. These cytokines may be novel biomarkers and therapeutic targets for RP.
DOI: 10.6084/m9.figshare.27756364
title: Analysis of candidate variants in a Chinese family with monozygotic twins with keratoconus: a case report

description: Keratoconus (KC) is an asymmetrical bilateral corneal ectasia, of which the pathogenesis is unknown. Moreover, genetic factors play an important role. We reported ophthalmic findings in a Chinese family with monozygotic twins with KC to describe the clinical features and identify genetic variants. Comprehensive ophthalmic clinical assessments and examinations, including history, slit-lamp biomicroscopy, best-corrected visual acuity, corneal topography, anterior segment optical coherence tomography, and corneal biomechanics, were carried out on the twins and their parents. Whole-genome sequencing (WGS) was performed to identify variants in this family. SIFT, PolyPhen2, MutationTaster, and CADD were used to predict the effect of amino acid substitutions on the affected protein. The twins presented typical KC features. However, their mother did not meet the criteria for a KC diagnosis but exhibited KC subclinical manifestations. After screening, 12 potentially pathogenic variants in 10 genes were identified in both twins and emerged as candidate variants for this family. These genes included 1 previously reported KC-associated variant (ZNF469, c.4384 G&gt;A); 8 variants in 6 KC-associated genes (GRHPR, c.337 G&gt;A, c.862_863del; COL6A1, c.920 G&gt;A; FLG, c.8753C&gt;G; HSPG2, c.9503C&gt;T; KRT82, c.1306 G&gt;A; SCN9A, c.5702_5706del, c.641 G&gt;A); and 3 variants in 3 non-KC-associated genes (PDE6G, c.6C&gt;A; HAL, c.1724C&gt;T; AGBL1, c.2381 G&gt;A). The accumulation of these potentially pathogenic variants in twins may have caused KC in these twins. These results expand the spectrum of KC candidate variants and provide a basis for further studies on KC.
DOI: 10.6084/m9.figshare.27756364.v1
title: Analysis of candidate variants in a Chinese family with monozygotic twins with keratoconus: a case report

description: Keratoconus (KC) is an asymmetrical bilateral corneal ectasia, of which the pathogenesis is unknown. Moreover, genetic factors play an important role. We reported ophthalmic findings in a Chinese family with monozygotic twins with KC to describe the clinical features and identify genetic variants. Comprehensive ophthalmic clinical assessments and examinations, including history, slit-lamp biomicroscopy, best-corrected visual acuity, corneal topography, anterior segment optical coherence tomography, and corneal biomechanics, were carried out on the twins and their parents. Whole-genome sequencing (WGS) was performed to identify variants in this family. SIFT, PolyPhen2, MutationTaster, and CADD were used to predict the effect of amino acid substitutions on the affected protein. The twins presented typical KC features. However, their mother did not meet the criteria for a KC diagnosis but exhibited KC subclinical manifestations. After screening, 12 potentially pathogenic variants in 10 genes were identified in both twins and emerged as candidate variants for this family. These genes included 1 previously reported KC-associated variant (ZNF469, c.4384 G&gt;A); 8 variants in 6 KC-associated genes (GRHPR, c.337 G&gt;A, c.862_863del; COL6A1, c.920 G&gt;A; FLG, c.8753C&gt;G; HSPG2, c.9503C&gt;T; KRT82, c.1306 G&gt;A; SCN9A, c.5702_5706del, c.641 G&gt;A); and 3 variants in 3 non-KC-associated genes (PDE6G, c.6C&gt;A; HAL, c.1724C&gt;T; AGBL1, c.2381 G&gt;A). The accumulation of these potentially pathogenic variants in twins may have caused KC in these twins. These results expand the spectrum of KC candidate variants and provide a basis for further studies on KC.
DOI: 10.6084/m9.figshare.27873198
title: Identification of regulatory genes associated with POAG by integrating expression and sequencing data

description: Primary open-angle glaucoma (POAG) is a subtype of glaucoma that accounts for 60%~70% of all cases. Its pathogenic mechanism is intricate and its pathogenic process is concealed. Numerous significant biological processes associated with POAG continue to be elucidated. In this study, by exploring the expression data of POAG tissues and normal tissues, we mined the regulatory lncRNAs and mRNAs closely associated with the pathogenesis and progression of POAG by exploring a regulatory network of competing endogenous RNA (ceRNA), established by integrating gene expression data with the known lncRNA–miRNA and miRNA–mRNA-regulatory interactions. The key regulatory pathways and regulatory elements of POAG were identified by topological analysis. Simultaneously, the exome data of 28 cases with POAG and healthy controls were analyzed to identify high-frequency mutations and genes. A total of 2712 differentially expressed genes were identified, including 1828 mRNAs and 884 lncRNAs. Network analysis suggested that lncRNAs such as HAGLR, HOTAIR and MIR29B2CHG, and mRNAs such as PPP6R3, BMPR2 and CFL2, may be involved in the onset and progression of POAG. In addition, 55 mutations with potential pathogenicity were identified. These genes and mutations provide novel potential genetic heterogeneity and genetic susceptibility of POAG, as well as fresh suggestions for elucidating the molecular mechanism underlying the pathogenesis of POAG.
DOI: 10.6084/m9.figshare.27873198.v1
title: Identification of regulatory genes associated with POAG by integrating expression and sequencing data

description: Primary open-angle glaucoma (POAG) is a subtype of glaucoma that accounts for 60%~70% of all cases. Its pathogenic mechanism is intricate and its pathogenic process is concealed. Numerous significant biological processes associated with POAG continue to be elucidated. In this study, by exploring the expression data of POAG tissues and normal tissues, we mined the regulatory lncRNAs and mRNAs closely associated with the pathogenesis and progression of POAG by exploring a regulatory network of competing endogenous RNA (ceRNA), established by integrating gene expression data with the known lncRNA–miRNA and miRNA–mRNA-regulatory interactions. The key regulatory pathways and regulatory elements of POAG were identified by topological analysis. Simultaneously, the exome data of 28 cases with POAG and healthy controls were analyzed to identify high-frequency mutations and genes. A total of 2712 differentially expressed genes were identified, including 1828 mRNAs and 884 lncRNAs. Network analysis suggested that lncRNAs such as HAGLR, HOTAIR and MIR29B2CHG, and mRNAs such as PPP6R3, BMPR2 and CFL2, may be involved in the onset and progression of POAG. In addition, 55 mutations with potential pathogenicity were identified. These genes and mutations provide novel potential genetic heterogeneity and genetic susceptibility of POAG, as well as fresh suggestions for elucidating the molecular mechanism underlying the pathogenesis of POAG.
DOI: 10.15468/dl.m7s3d4
title: Occurrence Download

description: A dataset containing 4270 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is one of (United States of America, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ambrosia chamissonis (Less.) Greene"
 ]
}

 The dataset includes 4270 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009257-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/e222922
title: FHA Multifamily: Maturing Subsidized Mortgages (HUD.GOV)

description: A GAO audit suggested that HUD identify subsidized projects with 
mortgages maturing in the next ten years. This data may be helpful to 
organizations interested in preserving affordable housing, by 
identifying those projects that will no longer be governed by the terms 
of the subsidized loan at some future date. It should be noted, however,
 that most of these projects also have project-based rental assistance 
contracts (e.g., Section 8) that contain restrictions on use and 
occupancy, and provide tenant protections which continue independent of 
the mortgage. State and local laws also affect the rights of owners and 
tenants, and market conditions will play a significant role in 
determining the rent levels for each project over time. Therefore, mere 
fact that a project's mortgage is maturing does not automatically 
indicate that any changes in its operation will occur.<br>
DOI: 10.3886/e222922v1
title: FHA Multifamily: Maturing Subsidized Mortgages (HUD.GOV)

description: A GAO audit suggested that HUD identify subsidized projects with 
mortgages maturing in the next ten years. This data may be helpful to 
organizations interested in preserving affordable housing, by 
identifying those projects that will no longer be governed by the terms 
of the subsidized loan at some future date. It should be noted, however,
 that most of these projects also have project-based rental assistance 
contracts (e.g., Section 8) that contain restrictions on use and 
occupancy, and provide tenant protections which continue independent of 
the mortgage. State and local laws also affect the rights of owners and 
tenants, and market conditions will play a significant role in 
determining the rent levels for each project over time. Therefore, mere 
fact that a project's mortgage is maturing does not automatically 
indicate that any changes in its operation will occur.<br>
DOI: 10.15468/dl.t56hr8
title: Occurrence Download

description: A dataset containing 6770 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "TaxonKey is Jabiru mycteria (Lichtenstein, 1819)"
 ]
}

 The dataset includes 6770 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009258-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5066/p14uxyvv
title: Soil-Water-Balance model and data for Phase 1 (2003–08) and Phase 2 (2018–23) hydrologic and water-budget analyses of the eastern part of the Arbuckle-Simpson aquifer, south-central Oklahoma, 2019–22

description: The U.S. Geological Survey (USGS), in cooperation with the Oklahoma Water Resources Board (OWRB) and the Oka' Institute, constructed a Soil-Water-Balance (SWB) model of the eastern part of the Arbuckle-Simpson aquifer in south-central Oklahoma. The SWB model was used to estimate recharge to the eastern part of the Arbuckle-Simpson aquifer between January 2019 and December 2022 for development of a water budget as part of a hydrologic investigation to compare phase 1 (2003-08) and phase 2 (2018-23) studies. The SWB model was used to estimate the amount of recharge entering the unconfined part of the eastern part of the Arbuckle-Simpson aquifer for use in the water budget. The SWB model was run only for the years 2019 through 2022 of the phase 2 period because most of the groundwater well data collection in phase 2 started in 2019 (these water level data were used for the change in groundwater storage analysis), and at the time the SWB code was run for this report, the climate data for the year 2023 were not available yet. This USGS data release contains input and output files for the SWB model described in the larger work citation (https://doi.org/10.3133/sir2025-5011). The data files that were used in the interpretation of model results and the associated model documentation report are included in the ancillary folder of this data release.
DOI: 10.15468/dl.xpe87q
title: Occurrence Download

description: A dataset containing 144228 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-76.49954 9.16104,-75.7438 8.45637,-75.09019 6.74064,-74.40594 6.48533,-73.34382 6.63852,-72.91489 7.36362,-73.04765 7.79255,-73.05787 8.51765,-73.08851 9.00785,-73.21106 9.70232,-73.63999 10.57039,-74.01786 11.10145,-74.91657 11.09124,-75.54976 10.67252,-76.49954 9.16104))",
 "OccurrenceStatus is Present",
 "TaxonKey is Mammalia"
 ]
}

 The dataset includes 144228 records from 160 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009254-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zdryfs
title: Occurrence Download

description: A dataset containing 1338319 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Spain",
 "DatasetKey is EOD – eBird Observation Dataset",
 "Year 2017-2017"
 ]
}

 The dataset includes 1338319 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009251-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dq6xb8
title: Occurrence Download

description: A dataset containing 1814 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rhyzobius lophanthae (Blaisdell, 1892)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1814 records from 104 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009259-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wdeapz
title: Occurrence Download

description: A dataset containing 12919 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is one of (United States of America, Mexico)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ambrosia psilostachya DC."
 ]
}

 The dataset includes 12919 records from 170 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009261-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15028463
title: Ciona tail regression_genotype_negative control_video2 (part1)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are negative control animals used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.5281/zenodo.15028464
title: Ciona tail regression_genotype_negative control_video2 (part1)

description: Video that was collected using Ciona Tracker 2.0 as part of Liang et al 2025. Animals included in this video are negative control animals used in CRISPR/Cas9 experiments addressing the role of Ano5 and Ano6 in Ciona sensory perception.
DOI: 10.15468/dl.53aacr
title: Occurrence Download

description: A dataset containing 122 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Peces de agua dulce del municipio El Carmen de Chucurí, Santander - Proyecto Santander BIO"
 ]
}

 The dataset includes 122 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0009263-250310093411724/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15028489
title: Data necessary to run the experiments found in "Demise of the world's largest piedmont glacier: a probabilistic forecast" by Brinkerhoff et al.

description: This dataset contains all data files necessary to run the experiments described in the paper.  This includes observations of the bed, surface mass balance, surface elevation, surface elevation change, boundary, and ice velocity.  These are designed to be understood in the context of the model featured in the manuscript.  Please see the manuscript's zenodo archive for a description of how to use these files.
DOI: 10.5281/zenodo.15028490
title: Data necessary to run the experiments found in "Demise of the world's largest piedmont glacier: a probabilistic forecast" by Brinkerhoff et al.

description: This dataset contains all data files necessary to run the experiments described in the paper.  This includes observations of the bed, surface mass balance, surface elevation, surface elevation change, boundary, and ice velocity.  These are designed to be understood in the context of the model featured in the manuscript.  Please see the manuscript's zenodo archive for a description of how to use these files.
DOI: 10.6084/m9.figshare.28599593
title: GenerativeAI based self-regulation and social media based co-regulation to enhance inclusive education leadership for climate-related disaster response

description: GenerativeAI based self-regulation and social media based co-regulation to enhance inclusive education leadership for climate-related disaster response
DOI: 10.6084/m9.figshare.28599593.v1
title: GenerativeAI based self-regulation and social media based co-regulation to enhance inclusive education leadership for climate-related disaster response

description: GenerativeAI based self-regulation and social media based co-regulation to enhance inclusive education leadership for climate-related disaster response
DOI: 10.5281/zenodo.15028525
title: Theory of Infinite Information Transformation

description: This paper presents a novel mathematical framework describing the transformation of infinite information into a perceivable reality. The formula establishes a fundamental relationship between absolute information, perception limitations, and the transformation mechanism that constructs reality as experienced by observers.

The author, **Michael Daskoli**, holds the intellectual property rights to this formula and its theoretical framework. Any use, reproduction, or citation of this work must acknowledge the author and comply with the chosen license.

This equation serves as a foundational principle for understanding how infinite information transforms into structured reality through selective perception and transformation functions. It bridges physics, consciousness studies, and information theory under a single mathematical framework.
DOI: 10.5281/zenodo.15028526
title: Theory of Infinite Information Transformation

description: This paper presents a novel mathematical framework describing the transformation of infinite information into a perceivable reality. The formula establishes a fundamental relationship between absolute information, perception limitations, and the transformation mechanism that constructs reality as experienced by observers.

The author, **Michael Daskoli**, holds the intellectual property rights to this formula and its theoretical framework. Any use, reproduction, or citation of this work must acknowledge the author and comply with the chosen license.

This equation serves as a foundational principle for understanding how infinite information transforms into structured reality through selective perception and transformation functions. It bridges physics, consciousness studies, and information theory under a single mathematical framework.