cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/cn8fny775d
title: Data for: The timing and nature of the last glacial cycle in New Zealand

description: These files contain the supplementary data for 'The timing and nature of the last glacial cycle in New Zealand'. There are three parts. Luminescence metadata (Fig 7) provides information about luminescence ages associated with glacial deposits in New Zealand including citations to papers, location and type of sample, method of dating etc. It supports Figure 7. The word file 'Contextual information and explanation for ages of Otiran advances (Fig 9)' provides an explanation of why we chose to the present our glacial events at low age resolution and information on how we calculated the ages. It also identifies which samples were used in determining ages of individual events and the advances. This word file is supported by an excel file 'Metadata for ages of Otiran Advances (Fig 9)' that provides the metadata for figure 9 in a more accessible form.
DOI: 10.17632/nzvtnc53k7
title: Immunoblots for data in Qin et al, 2025, SARS-CoV-2 enhances lysosomal exocytosis efficiency and deacidifies lysosomes to facilitate viral release

description: Page 2 presents the original, unedited images to generate Figure S1E. Effects of CID1067700 on intracellular LAMP1 in SARS-CoV-2-trVLP-infected cells (8–14 h pi) by western blot. DMSO treatment served as negative control. The samples of the immunoblots that were shown in Figure S1E are highlighted by the red boxes.
 
Page 3 presents the original, unedited images to generate Figure 2C.The effect of SARS-CoV-2 trVLP infection on the total LAMP1 level. Representative immunoblot analysis of LAMP1 and actin in cell lysate of uninfected and SARS-CoV-2- trVLP-infected Caco-2-N cells are shown. 
 
Page 4 presents the original, unedited images to generate Figure 2E. The effects of SARS-CoV-2 trVLP infection on the release of cathepsin D and cathepsin L. Representative immunoblot analyses of lysosomal cathepsin D and cathepsin L released into the culture medium of uninfected and SARS-CoV-2- trVLP-infected cells are shown. 
 
Page 5 presents the original, unedited images to generate Figure S2A. Quantitative analysis of cathepsin D and cathepsin L in uninfected and SARS-CoV-2-trVLP-infected Caco-2-N cells. Representative immunoblot analyses of intracellular lysosomal cathepsin D and cathepsin L of uninfected and SARS-CoV-2-trVLP-infected cells are shown. The samples of the immunoblots that were shown in Figure S2A are highlighted by the red boxes.
DOI: 10.6084/m9.figshare.29170445.v1
title: <i>In vivo </i>datasets associated with the manuscript: "Imaging of adeno-associated viral capsids for purposes of gene editing using CEST NMR/MRI"

description: Accompanying data for the paper: "Imaging of adeno-associated viral capsids for purposes of gene editing using CEST NMR/MRI".
DOI: 10.6084/m9.figshare.3840021.v2
title: Individual images of Xenopus laevis tadpoles

description: <b>Methods</b><br><br>Pictures of animals were acquired during the course of experimental work in the laboratory of Hans Straka at the Ludwig-Maximilians-Universität Munich. Details on methods of these experiments are available in publications from the laboratory (see references). All pictures were taken under MS-222 anesthesia of the animal.<br> <br> <i>Images:</i> All images were acquired using a camera (Moticam 580) on an Olympus SHX16 dissection scope using both a white and a black background and from a ventral and a dorsal view (illumination by a ZLED CLS 6000). Due to the size of the animals, multiple overlapping images were collected and stitched in Adobe Photoshop using the File &gt; Automate &gt; Photomerge function. A scale bar was added in ImageJ. For all images with a white background and a dorsal view, a mask was created in Photoshop.<br> <br> The white dorsal views of the animals were assembled in an overview and are available in 'Xenopus laevis: overview over late tadpole stages' (see references). Schematics are available in 'Schemes of Xenopus laevis tadpoles' (see references)<br><br>Version 2: addition of stage 55 image.<br>
DOI: 10.6084/m9.figshare.5772483.v1
title: Epidemiologic analysis of temporal evolution of papaya sticky disease

description: ABSTRACT Analysis of temporal evolution of papaya sticky disease provides subsidies to understand the etiology, verify the dispersion and generate information about the influence of cultural, biological and environmental factors on the population dynamics of the pathogen/disease, providing data for the design of disease management strategies. Thus, the aim of this study was to characterize the temporal evolution in plants affected by papaya sticky disease in commercial orchards at Linhares Municipality, north of Espírito Santo State, Brazil. The experiment was conducted in commercial fields of papaya cv. ‘Sunrise Golden’, where the disease intensity was assessed in each orchard and, at the end, disease progress curves were generated. The data of curves were subjected to simple linear regression analysis, adjusted to the empirical models Logistic, Monomolecular and Gompertz. The most favorable period of the year for the disease development were colder and dry months, while the warmest and wettest months favored the mitigation of symptoms. Finally, the model that best fitted to the papaya sticky disease epidemics was the Gompertz model.
DOI: 10.6084/m9.figshare.7376042.v1
title: Supplementary Material for: Prognostic Value of microRNA-133a Expression and Its Clinicopathologic Significance in Non-Small Cell Lung Cancer: A Comprehensive Study Based on Meta-Analysis and the TCGA Database

description: <b><i>Background:</i></b> The role of microRNA-133a (miR-133a) in non-small cell lung cancers (NSCLCs) is controversial. Thus, we conducted a comprehensive study based on meta-analysis and The Cancer Genome Atlas (TCGA) database. <b><i>Methods:</i></b> Publications were searched in both English and Chinese databases, and meta-analysis was performed using Stata 12.0. The clinical value of miR-133a in NSCLC was investigated by collecting and calculating data from the TCGA database, and the statistical analysis was performed in R 3.5.0. <b><i>Results:</i></b> 5 studies with 364 cases were included in this meta-analysis. The combined pooled result showed that high expression of miR-133a was associated with a favorable survival outcome in NSCLC patients (hazard ratio 0.561, 95% confidence interval 0.396-0.794, p = 0.001). Meanwhile, a total of 984 NSCLC patients were extracted from the TCGA database. Results showed an area under the ROC curve value for miR-133a-3p of 0.902, and the expression of miR-133a-3p was linked with clinicopathologic parameters of NSCLC (p &lt; 0.05), including sex, age, social status, and lymph node metastasis. <b><i>Conclusion:</i></b> Our study indicated that miR-133a might act as a tumor suppressor and be a valuable independent prognostic and diagnostic biomarker for NSCLC, and NSCLC patients with high expression of miR-133 might have a better prognosis.
DOI: 10.17632/znrht9f46j
title: Mass lysis of predatory bacteria drives the enrichment of antibiotic resistance in soil microbial communities

description: Several studies have investigated the effects of antibiotics on the evolution and maintenance of antimicrobial resistance (AMR). However, the impact of microbial interactions in antibiotic-free environments on resistance in natural communities remains unclear. Here, we investigated whether the predatory bacterium M. xanthus, which can produce antimicrobials as a prey-killing mechanisms, influences the abundance of antibiotic-resistant bacteria in its local environment, regardless of active predation. We observed an association between the presence of M. xanthus in soil and the frequency of antibiotic-resistant bacteria. Additionally, culture-based and metagenomic analysis showed that co-culturing M. xanthus with soil-derived communities in liquid cultures enriched AMR among non-myxobacterial isolates. This is because the lysis of M. xanthus, triggered during the starvation phase of the co-culture experiments, releases diffusible growth inhibitory compounds that enrich pre-existing resistant bacteria. Furthermore, our results show that death during multicellular fruiting body formation, a starvation-induced stress response in M. xanthus that results in over 90% cell death, also releases growth inhibitory molecules that enrich resistant bacteria. Hence, the higher abundance of resistant bacteria in the soil communities, where M. xanthus can be detected, was because of the diffusible growth-inhibitory substances that were released due to the death of M. xanthus cells during fruiting body formation. Together, our findings demonstrate how the death of M. xanthus, an important aspect of its life cycle, can impact antibiotic resistomes in natural soil communities without the anthropogenic influx of antibiotics.
DOI: 10.6084/m9.figshare.16649887.v1
title: Supplementary Data File 1 beataml_raw_mat.csv

description: transcriptome data sets of BeatAMl
DOI: 10.6084/m9.figshare.27979550.v1
title: tissue_masks.zip

description: https://doi.org/10.1038/s42256-024-00889-5https://github.com/AI4SCR/VirtualMultiplexer
DOI: 10.17632/8sbwf397jk
title: BiMaTS

description: HardwareX: Biaxial Testing System for Characterization of Mechanical and Rupture Properties of Small Samples
DOI: 10.25418/crick.27153459.v1
title: Data and analysis code for Rodrigues et al., PLoS Biology (2024)

description: This repository includes code and data associated with the following manuscript:Rodrigues et al. (2024). Quantitative perturbation-phenotype maps reveal nonlinear responses underlying robustness of PAR-dependent asymmetric cell division. PLoS Biology. doi: https://doi.org/10.1371/journal.pbio.3002437It includes the following:<b>Analysis code</b> (Folder: SourceCode-2024-Rodrigues-PLOS)par-segmentation-0.1.16.zip2024-Rodrigues-PLOS-PLOS_final_submission.zipMost recent versions also available at https://github.com/goehringlab/<b>Experimental Source Data</b> (Folder: SourceData-2024-Rodrigues-PLOS).All underlying quantitative data for Fig. 2-8, S1, S2.Please see manuscript and included documentation for details.
DOI: 10.5522/04/12657035.v1
title: A historical dataset on UK education 1833-2019

description: The dataset gathers historical series on the funding and enrolment in the UK public education system from 1833 to 2019. Funding and enrolment are distributed by level of education, funders and economic categories. It is based on the method of quantitative history which follows the principles of national accounting and provides a stable frame to integrate financial and other data, and allow comparisons across time and space<br><br>
DOI: 10.6084/m9.figshare.26536366.v1
title: Source Data - The frequency of CD38+ alveolar macrophages correlates with early control of M. tuberculosis in the lung. - Pisu-Johnston-Mattila- Russell.zip

description: Tuberculosis, caused by <i>Mycobacterium tuberculosis</i>, remains an enduring global health challenge due to the limited efficacy of existing treatments. Although much research has focused on immune failure, the role of host macrophage biology in controlling the disease remains underappreciated. Here we show, through multi-modal single-cell RNA sequencing in a murine model, that different alveolar macrophage subsets play distinct roles in either advancing or controlling the disease. Initially, alveolar macrophages that are negative for the CD38 marker are the main infected population. As the infection progresses, CD38<sup>+</sup> monocyte-derived and tissue-resident alveolar macrophages emerge as significant controllers of bacterial growth. These macrophages display a unique chromatin organization pre-infection, indicative of epigenetic priming for pro-inflammatory responses. Moreover, intranasal BCG immunization increases the numbers of CD38<sup>+</sup> macrophages, enhancing their capability to restrict <i>Mycobacterium tuberculosis</i> growth. Our findings highlight the dynamic roles of alveolar macrophages in tuberculosis and open pathways for improved vaccines and therapies.
DOI: 10.6084/m9.figshare.29027642.v1
title: "Leveraging Islamic Finance for Sustainable Universal Health Coverage (UHC) in Africa

description: The intersection of Islamic finance and Africa’s public health needs presents a unique opportunity. By adopting sukuk, waqf, and zakat as strategic instruments, African countries can develop resilient and sustainable UHC models. With guidance from public health leaders like Dr. Tijjani Bambale and support from Islamic finance institutions, this initiative can become a beacon for ethical and inclusive health financing worldwide.
DOI: 10.6084/m9.figshare.3558867.v1
title: Appendix B. Mean pool depths over the duration of the experiment.

description: Mean pool depths over the duration of the experiment.
DOI: 10.60893/figshare.jcp.27280701.v1
title: Supplemental Material

description: Summary of contact angles of a water droplet on SiO2 surfaces from MD simulations using the INTERFACE force field, parameters for simulation systems, the parameters of the force field, and hydrogen bond number density of bulk water molecules on Q3/Q4 SiO2 surfaces as a function of temperature.
DOI: 10.17632/5zmhwff6d9
title: Can Enterprise Digital Transformation Reduce the Reliance on Bank Credit? Evidence from China

description: This is the Replication Folder of the paper titled "Can Enterprise Digital Transformation Reduce the Reliance on Bank Credit? Evidence from China"
Regarding the empirical evidence, this paper first report the results of descriptive statistics for the key variables, and then proceeds to the fourth part of Empirical results and analysis, which has the following main content.
4.1Basic regression; 
4.2Robustness check,including:4.2.1Regression results of robustness check 1: Replacing the indicator of enterprise digital transformation;4.2.22Replacing the reliance on bank credit indicator;4.2.3excluding data for first-tier cities and province-level municipalities in China;4.2.4time * industry fixed effects;
4.3Endogeneity test,including:4.3.1Exogenous policy shocks and 4.3.2Instrumental variables method;
4.4Mechanism analysis.
Finally, we performed the fifth part of the mechanistic analysis and the sixth part of the Heterogeneous effects based on the baseline regression.
The statistical software we use is Stata17.
DOI: 10.17632/sbcf36976g
title: Data on the Validation to Determine the Material Thermal Properties Estimation Via a One-Dimensional Transient Convection Model

description: Data were used to estimate the conduction and convection coefficients for a one-dimensional convection model with constant heat flux and adiabatic boundaries.
DOI: 10.6084/m9.figshare.20338536.v3
title: TNBC Data from Wu et al, 2021

description: Anndata format of the TNBC data set generated by Wu et al, 2021, together with inferred cytokine activity, as described in Dimitrov et al, 2022.<br> <br> <br> Wu, S.Z., Al-Eryani, G., Roden, D.L., Junankar, S., Harvey, K., Andersson, A., Thennavan, A., Wang, C., Torpy, J.R., Bartonicek, N. and Wang, T., 2021. A single-cell and spatially resolved atlas of human breast cancers. <em>Nature genetics</em>, <em>53</em>(9), pp.1334-1347.<br> <br> Dimitrov, D., Türei, D., Garrido-Rodriguez, M., Burmedi, P.L., Nagai, J.S., Boys, C., Ramirez Flores, R.O., Kim, H., Szalai, B., Costa, I.G. and Valdeolivas, A., 2022. Comparison of methods and resources for cell-cell communication inference from single-cell RNA-Seq data. <em>Nature Communications</em>, <em>13</em>(1), pp.1-13.
DOI: 10.6084/m9.figshare.3519878.v1
title: Appendix A. List of tree species and their estimated functional trait values.

description: List of tree species and their estimated functional trait values.
DOI: 10.17632/n9s9zgd79z
title: Effect of nitrogen source and nickel concentration on green microalgae Botryococcus braunii growth and its remediation potential

description: Most of the data collection are listed in the attached excel file, and also a resume of the final data used in different figures and tables are presented. All authors contributed to the present article. Dra. Areco and Dr. Curutchet contributed to the study conception, design and the analysis of the results. Material preparation and data collection were performed by Loreta Rojas, Victoria Passucci, Dr. Diego Noseda, Dr. Maria Mar Areco and to a lesser extent Nicolás Rotella. The first draft was written by Dr. Maria Mar Areco and all authors commented on previous versions of the manuscript. Final version was evaluated by Dr. Gustavo Curutchet. All authors have read and approved the final manuscript.
DOI: 10.6084/m9.figshare.1494839.v1
title: Lake Victoria Shapefiles

description: A digital GIS map of Lake Victoria with Bathymetry
DOI: 10.6084/m9.figshare.19593370.v1
title: V_2 pharmacist DRPs serivces Irbid 200 Minimal Dataset.sav

description: DRP reduction services provided by community pharmacists from Jordan <br>
DOI: 10.6084/m9.figshare.20260593.v1
title: MELoR Falls Dataset

description: This is part of the MELoR study dataset that used in the manuscript to comply with PLOS' data policy.
DOI: 10.6084/m9.figshare.27203760.v1
title: Data of 'Impacts of Plant Functional Group Dominance and Geochemical Factors on Soil Carbon Stocks and Fractions in Grassland Ecosystems'

description: Soil, as the largest repository of terrestrial organic carbon, plays a pivotal role in mitigating climate change and facilitating carbon-climate feedbacks. By monitoring the changes in the physicochemical properties of soil in natural reserves, we can contribute to the establishment of an integrated monitoring system for ecological components in the nature reserve. We selected 124 mono-species patches from various plant functional groups, measuring microbial biomass carbon, soil texture, soil metal oxides content, and soil carbon content. The dataset size is approximately 46KB.
DOI: 10.7294/21215213.v1
title: Indiana Data from the Wildlife Viewer Survey

description: Through a 2021 AFWA MultiState Conservation Grant, Virginia Tech and the AFWA Wildlife Viewing and Nature Tourism Working Group conducted national and state level surveys to gather more data on wildlife viewers. This dataset is from the survey conducted in Indiana. It contains: 1. Indiana Wildlife Viewer Survey.pdf: a pdf version of the survey instrument 2. Indiana_WildlifeViewerSurvey.csv: a csv (comma-separated values) file of the dataset 3. Indiana_WildlifeViewerSurvey.sav: a sav (compatible with SPSS, the Statistical Package for Social Science) file of the dataset 4. WildlifeViewerSurveyData_VariableGuide: a guide to each variable name in the datasets.
DOI: 10.17632/fwn3s4h88v
title: Data for: Blockchain Adoption Challenges in Supply Chain: An Empirical Investigation of the Main Drivers in India and the USA
DOI: 10.25378/janelia.12106824.v1
title: plasticity_codes_and_preprocessed_data.tar.gz

description: Analysis codes and pre-processed data to generate figures in the following paper.<br><br>Generation of stable heading representations in diverse visual scenes<br>Sung Soo Kim+, Ann M. Hermundstad, Sandro Romani, L. F. Abbott, Vivek Jayaraman+<br>Nature (2019) 576:126-131<br><br>
DOI: 10.6084/m9.figshare.20027409.v1
title: Effects of termal treatment on the physical properties of Buchenavia sp. (branquilho) wood

description: Abstract This work aimed to evaluate the effect of heat treatment on the physical properties of wood from Buchenavia sp. The heat treatments were carried out at temperatures of 180 °C and 200 °C for 2 h. Apparent density (AD), basic density (BD), porosity (Ф), mass loss, longitudinal (LS), radial (RS), tangential (TS) and volumetric (VS) shrinkages and anisotropic factor (AF) were determined. The lowest values of basic density (0.67 g cm-3), apparent density (0.77 gcm-3), and porosity (43.3%) were observed for the wood treated at a temperature of 200 °C. Mass losses increased with increasing temperature and the highest values were observed under the condition of 200 °C (9.3%). The LS and AF was not affected by heat treatments. The mean values for RS (3.1%), TS (5.1%), and VS (9.1%) were reduced after the performance of heat treatments at temperatures of 180°C and 200°C, which did not differ from each other. The thermal treatments were able to reduce the dimensional instability of Buchenavia sp. Thermal treatments enhance the use of less prestigious Amazonian woods in the civil construction market.
DOI: 10.6084/m9.figshare.23601195.v1
title: GoogleNews-vectors-negative300

description: GoogleNews-vectors-negative300
DOI: 10.6084/m9.figshare.7698275.v1
title: Global gridded AHF for 1970, 2015, and 2050 (2.5 arc-minute)

description: This dataset shows the spatial distribution of the annual mean anthropogenic heat flux (AHF) for 1970, 2015, and 2050 in the world. Spatial resolution of these data is 2.5 arc-minute.
DOI: 10.6084/m9.figshare.9765803.v1
title: expt_is_metal

description: <pre>Matbench v0.1 test dataset for classifying metallicity from composition alone. Retrieved from Zhuo et al. supplementary information. Deduplicated according to composition, ensuring no conflicting reports were entered for any compositions (i.e., no reported compositions were both metal and nonmetal).</pre>
DOI: 10.6084/m9.figshare.26488753.v1
title: IR and LC-MS raw data.zip

description: IR and LC-MS raw data
DOI: 10.6084/m9.figshare.28106363.v1
title: Ade_hexa

description: A kiwifruit genome
DOI: 10.6084/m9.figshare.7957145.v1
title: Observation reports of acid rain collected on Mt. Tateyama (2018)

description: Acid rain observations were done at 10 observation points from Katsuradai (660 m a. s. l.) to Murodo-daira (2450 m a. s. l.) in Mt. Tateyama and Toyama Science Museum in Toyama city. Some rain collectors set at Mt. Tateyama had been turned over by the strong wind of the typhoon during observation periods in 2018. Precipitations were increased with the rise in altitude (altitude effect). Concentrations of nitrate ions were decreased with the rise in altitude (altitude effect). However, it was observed during July to September that concentrations of non-sea salt sulfate ion increased with rise in altitude. Concentrations of ammonium ions at observation points of Mt. Tateyama were fluctuated in July and August though that concentrations showed altitude effect like as nitrate ion in September and October. These phenomena were similar to observations in 2017. Value of pH was the lowest at observation point of Murodou-daira in July and August. It was considered that the lowest pH at Murodou-daira was due to transported acidic constituent from the Asian Continent, because nitrate contribution ratio was the lowest. Number concentrations of suspended particles in precipitation collected at Oiwake (1800 m a. s. l.) from 18 to 29, August were the highest from other observation points, and sample water seemed pale yellow. These particles might be due to the Asian dust.
DOI: 10.17632/hvbwk2myr6
title: Recovery time of midazolam continuous infusion for dental implant surgery

description: Midazolam is widely used as a sedative; however, few studies have measured recovery time after continuous administration. In this study, sedation during implant surgery was performed with the continuous administration of midazolam, and the recovery time was measured.
A bolus dose of 0.05 mg/kg was administered to 46 patients with an American Society of Anesthesiologists classification of I or II. The continuous dose was initiated at 0.025 mg/kg/h and was thereafter adjusted to maintain a bispectral index of 70–80. Midazolam was discontinued at the end of the procedure and the awakening time was defined as that when the bispectral index ≥ 90. After transfer to the recovery room, the patient’s state was evaluated using the post anesthetic discharge score, and subsequently evaluated every 20 min. When the score reached ≥ 9, the patient was allowed to return home. The elapsed time between initiation of midazolam and a post anesthetic discharge score exceeding 9 was 90–110 min.
One hour of continuous infusion of midazolam can be administered approximately one hour after awakening if the depth of sedation is properly managed.