cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.11093179
title: DeepSEA complete datasets and code

description: Surveying antimicrobial resistance (AMR) is essential to track the evolution and spread of resistant genes/proteins since AMR is a major cause of death, being responsible for more deaths than HIV and malaria combined.  Alignment-based annotation tools use strict similarity (>70%) cutoffs to distinguish between potential and AMR real sequences and only annotate proteins similar to those in their databases. DeepARG and AMRFinderPlus use artificial neural networks (ANN) and Hidden Markov Models (HMM) to annotate AMR proteins with remote homology. However, DeepARG needs a pre-processing step that aligns the query data and selects the most probable proteins, although the filtering uses looser cutoffs. HMMs also depend on multi-sequence alignment (MSA) and are focused on a single AMR class. Here we present DeepSEA, an alignment-free tool fitted on antimicrobial resistant proteins (APR) and non-resistant proteins (NRP) aligned and unaligned to ARP. Our results show that DeepSEA outperforms the current multi-class AMR classifiers. Furthermore, DeepSEA’s model can cluster AMR by resistant mechanisms, showing that the model's latent variables successfully captured distinguishing features of antibiotic resistance. Our tool annotated functionally validated tetracycline destructases (TDases) and confirmed the identification of a novel TDase found by HMM.
DOI: 10.15468/dl.k2tn4y
title: Occurrence Download

description: A dataset containing 6198293 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Peru",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6198293 records from 1259 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0222324-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.lkmcj4
title: Occurrence Download

description: A dataset containing 4 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is The New York Botanical Garden Herbarium (NY)",
 "TaxonKey is Lonicera deflexicalyx Batalin"
 ]
}

 The dataset includes 4 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001669-180920211646547/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5984ux
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Hypomyces pseudolactifluorum sp. nov. (Hypocreales: Hypocreaceae) on Russula sp. from Yunnan, PR China"
 ]
}

 The dataset includes 3 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339997-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wrusfg
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Sporocadus trimerus (Sacc.) Arx",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 {
 "or" : [
 "Country is Poland",
 "Country is Poland"
 ]
 }
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0395266-210914110416597/datasets/export for details.
DOI: 10.15468/dl.nl1vjh
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Guatemala",
 "DatasetKey is Herpetile collection NTNU University Museum"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001669-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m59mbh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Molecular and morphological evidence reveals a new genus of the subfamily Heteropterinae (Lepidoptera, Hesperiidae) from China"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0340008-200613084148143/datasets/export for details.
DOI: 10.15468/dl.ggusts
title: Occurrence Download

description: A dataset containing 86 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ophrys atlantica Munby"
 ]
}

 The dataset includes 86 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018603-181108115102211/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ewf8km
title: Occurrence Download

description: A dataset containing 910048 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is Zimbabwe"
 ]
}

 The dataset includes 910048 records from 640 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0041756-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cqwsf0
title: Occurrence Download

description: A dataset containing 1693 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Calomys Waterhouse, 1837",
 "Geometry POLYGON((-70.97 -24.33,-70.97 -16.12,-57.19 -16.12,-57.19 -24.33,-70.97 -24.33))",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1693 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044901-160910150852091/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mz4p64
title: Occurrence Download

description: A dataset containing 1215 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Potentilla grammopetala Moretti, Scutellaria altissima L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 1215 records from 53 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161976-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gpsnes
title: Occurrence Download

description: A dataset containing 16 species occurrences available in GBIF matching the query:
{
 "and" : [
 "ScientificName is Encephalartos dolomiticus Lavranos & D.L.Goode",
 "DecimalLatitude is greater than or equal to -90",
 "DecimalLongitude is greater than or equal to -180"
 ]
}

 The dataset includes 16 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025503-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rvahpe
title: Occurrence Download

description: A dataset containing 392 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Country is Mexico",
 "TaxonKey is Andira inermis (W.Wright) DC."
 ]
}

 The dataset includes 392 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0001669-190307172214381/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fa4hfw
title: Occurrence Download

description: A dataset containing 33 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Leucocoprinus Pat., 1888"
 ]
}

 The dataset includes 33 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0339940-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jw773i
title: Occurrence Download

description: A dataset containing 5385 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Commelina benghalensis L."
 ]
}

 The dataset includes 5385 records from 252 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0018603-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tmrpr2
title: Occurrence Download

description: A dataset containing 140 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Eucalyptus tenella L.A.S.Johnson & K.D.Hill",
 {
 "or" : [
 "BasisOfRecord is Human Observation",
 "BasisOfRecord is Observation"
 ]
 },
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 140 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044856-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4bahct
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "TaxonKey is Caquetaia umbrifera (Meek & Hildebrand, 1913)"
 ]
}

 The dataset includes 110 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0179154-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.acmq2v
title: Occurrence Download

description: A dataset listing the 606 species recorded in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "TaxonKey is Bulbophyllum Thouars"
 ]
}

 The dataset's 606 records were derived from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331545-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qsszmd
title: Occurrence Download

description: A dataset containing 19726 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rickettsia da Rocha-Lima, 1916"
 ]
}

 The dataset includes 19726 records from 236 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0194078-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8pgj42
title: Occurrence Download

description: A dataset containing 681025 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Solanum villosum Mill., Solanum forskalii Dunal, Solanum nigrum L., Sorbus aucuparia L., Thalictrum minus L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 681025 records from 667 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0161980-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vgfbaq
title: Occurrence Download

description: A dataset containing 7877 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Euphorbia terracina L."
 ]
}

 The dataset includes 7877 records from 99 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000059-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jkkbn4
title: Occurrence Download

description: A dataset containing 188 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cochlicella ventricosa (Draparnaud, 1801)"
 ]
}

 The dataset includes 188 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0025464-191105090559680/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hvzpc6
title: Occurrence Download

description: A dataset containing 612 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "Geometry POLYGON((-135.52429 32.98718,-105.47571 32.98718,-105.47571 45.01282,-135.52429 45.01282,-135.52429 32.98718))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Lilium parvum Kellogg"
 ]
}

 The dataset includes 612 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0118997-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nhlv7y
title: Occurrence Download

description: A dataset containing 14963 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Milvago chimachima (Vieillot, 1816)"
 ]
}

 The dataset includes 14963 records from 73 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-150210113312293/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jyyhvu
title: Occurrence Download

description: A dataset containing 5768 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Bombus affinis Cresson, 1863",
 "Year 1000-1990"
 ]
}

 The dataset includes 5768 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007467-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.efolco
title: Occurrence Download

description: A dataset containing 186 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Monogramma Comm. ex Schkuhr",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 186 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-150211104439307/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eed4f4
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Mollinedia luizae Peixoto"
 ]
}

 The dataset includes 56 records from 26 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181377-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.x3bpaf
title: Occurrence Download

description: A dataset containing 627 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Canada"
 ]
 },
 "TaxonKey is Anopheles quadrimaculatus Say, 1824"
 ]
}

 The dataset includes 627 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000732-190415153152247/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wez449
title: Occurrence Download

description: A dataset containing 5720 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is United States of America",
 "TaxonKey is Clemmys guttata (Schneider, 1792)"
 ]
}

 The dataset includes 5720 records from 66 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013429-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w8tmns
title: Occurrence Download

description: A dataset containing 1887 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aves",
 "Country is Slovakia",
 "BasisOfRecord is Human Observation"
 ]
}

 The dataset includes 1887 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-150215220751508/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.26xp4k
title: Occurrence Download

description: A dataset containing 187 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Sternotherus minor peltifer Smith & Glass, 1947"
 ]
}

 The dataset includes 187 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013433-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pupbjh
title: Occurrence Download

description: A dataset containing 38677 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-41.24155 17.88730,114.24155 17.88730,114.24155 80.11270,-41.24155 80.11270,-41.24155 17.88730))",
 "HasCoordinate is true",
 "TaxonKey is Martes martes (Linnaeus, 1758)",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 38677 records from 190 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021232-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qmyvas
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aristolochia L.",
 "Geometry POLYGON((-18.259277 29.305561,-18.259277 27.371767,-13.249511 27.371767,-13.249511 29.305561,-18.259277 29.305561))"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-150311145101897/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qqzy5v
title: Occurrence Download

description: A dataset containing 31317 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Eryngium maritimum L."
 ]
}

 The dataset includes 31317 records from 284 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0119009-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8tdbdf
title: Occurrence Download

description: A dataset containing 34312 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Material sample, Occurrence evidence)",
 "Continent is North America",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Chelydra serpentina (Linnaeus, 1758)"
 ]
}

 The dataset includes 34312 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190967-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ybjdmo
title: Occurrence Download

description: A dataset containing 3845 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cambaridae",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Geometry POLYGON((-126.210937 50.513426,-88.945312 50.958426,-78.046875 45.460130,-68.027343 49.267804,-62.050781 44.465151,-76.816406 30.751277,-74.707031 23.241346,-83.144531 22.593726,-86.308593 27.683528,-93.339843 27.059125,-96.503906 22.755920,-123.398437 32.249974,-127.089843 41.244772,-126.5625 46.679594,-126.5625 46.679594,-126.210937 50.513426))"
 ]
}

 The dataset includes 3845 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000060-150407101314760/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.18kvuk
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Ecuador",
 "TaxonKey is Trigona dimidiata Smith, 1854"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021227-190918142434337/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a9pqzm
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Zimbabwe",
 "OccurrenceStatus is Present",
 "TaxonKey is Kalanchoe Adans."
 ]
}

 The dataset includes 117 records from 22 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0190954-230224095556074/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.