cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/th006548
title: TH006548
title: Pertusariaceae

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th012718
title: TH012718
title: Porodaedalea

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th031490
title: TH031490
title: Absconditella

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th031491
title: TH031491
title: Acarosporina

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th037751
title: TH037751
title: Ostericum

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th037752
title: TH037752
title: Polytaenia

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th044059
title: TH044059
title: Cephalorhizum

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th077392
title: TH077392
title: Eleorchis

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th083627
title: TH083627
title: Haddowia

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th089881
title: TH089881
title: Pouzarella

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th000282
title: TH000282
title: Myrmecridiales

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th071157
title: TH071157
title: Brassicaceae

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th077393
title: TH077393
title: Pseudolotus

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th077394
title: TH077394
title: Schizotrema

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.15156/bio/th077395
title: TH077395
title: Apatemon

description: Here we present the novel 'taxon hypothesis' (TH) concept to accommodate fungal 'species hypothesis' (SH) into existing classification frameworks for taxonomic communication. As supplied with Digital Object Identifiers (DOIs), THs are flexible in time and enable direct cross-communication of higher level taxa along with evolving classification schemes. Every TH includes given number of SHs and consequently fixed number of fungal rDNA ITS sequences. DNA sequences generated by High-throughput or Sanger sequencing studies and identified against UNITE SHs will be automatically assigned to THs as well.
DOI: 10.6084/m9.figshare.26509668
title: <i>In vitro</i> and <i>in vivo</i> inhibitory effects of the Sanghuang mushroom extracts against <i>Candida albicans</i>

description: <b>Aim:</b> To explore the antifungal potential of Sanghuang mushroom, a traditional Chinese medicine. <b>Materials & methods:</b> The antifungal properties and the potential mechanism of Sanghuang mushroom extracts against <i>Candida albicans</i> were studied <i>in vitro</i> and <i>in vivo</i>. <b>Results:</b> Sanghuang mushroom extracts inhibited the biofilm formation, increased the cell membrane permeability and promoted cell apoptosis of <i>C. albicans in vitro</i>. In a murine model of vulvovaginal candidiasis, Sanghuang mushroom extracts reduced the vaginal fungal load, improved inflammatory cell infiltration and downregulated the expression of TNF-α, IL-1β and IL-6. Untargeted metabolomic analysis suggested the presence of ten antifungal components in Sanghuang mushroom extracts. <b>Conclusion:</b> Sanghuang mushroom extracts showed promise as antifungal agent against candidiasis, with potential therapeutic implications. Sanghuang mushroom extracts exhibit potent antifungal properties against <i>C. albicans</i>. Scanning electron microscopy reveals the impact of Sanghuang mushroom extracts on biofilm architecture. A murine model of vulvovaginal candidiasis (VVC) confirms the ability of Sanghuang mushroom extracts to suppress <i>C. albicans</i> infiltration. Flow cytometry data illustrate the induction of reactive oxygen species and promotion of apoptosis in <i>C. albicans</i> biofilm cells. Untargeted metabolomic analysis identifies potential bioactive compounds contributing to the antifungal effects. Sanghuang mushroom extracts emerge as promising candidates for the development of novel antifungal therapies.
DOI: 10.6084/m9.figshare.26509668.v1
title: <i>In vitro</i> and <i>in vivo</i> inhibitory effects of the Sanghuang mushroom extracts against <i>Candida albicans</i>

description: <b>Aim:</b> To explore the antifungal potential of Sanghuang mushroom, a traditional Chinese medicine. <b>Materials & methods:</b> The antifungal properties and the potential mechanism of Sanghuang mushroom extracts against <i>Candida albicans</i> were studied <i>in vitro</i> and <i>in vivo</i>. <b>Results:</b> Sanghuang mushroom extracts inhibited the biofilm formation, increased the cell membrane permeability and promoted cell apoptosis of <i>C. albicans in vitro</i>. In a murine model of vulvovaginal candidiasis, Sanghuang mushroom extracts reduced the vaginal fungal load, improved inflammatory cell infiltration and downregulated the expression of TNF-α, IL-1β and IL-6. Untargeted metabolomic analysis suggested the presence of ten antifungal components in Sanghuang mushroom extracts. <b>Conclusion:</b> Sanghuang mushroom extracts showed promise as antifungal agent against candidiasis, with potential therapeutic implications. Sanghuang mushroom extracts exhibit potent antifungal properties against <i>C. albicans</i>. Scanning electron microscopy reveals the impact of Sanghuang mushroom extracts on biofilm architecture. A murine model of vulvovaginal candidiasis (VVC) confirms the ability of Sanghuang mushroom extracts to suppress <i>C. albicans</i> infiltration. Flow cytometry data illustrate the induction of reactive oxygen species and promotion of apoptosis in <i>C. albicans</i> biofilm cells. Untargeted metabolomic analysis identifies potential bioactive compounds contributing to the antifungal effects. Sanghuang mushroom extracts emerge as promising candidates for the development of novel antifungal therapies.
DOI: 10.6084/m9.figshare.26509720
title: New Delhi metallo-β-lactamases among extensively drug-resistant clinical isolates from Lahore, Pakistan

description: <b>Aim:</b> The study determines rates of carbapenem resistance (CR) and frequency of <i>bla</i><sub>NDM</sub> in multidrug-resistance (MDR) or extensive drug resistance (XDR), and evaluates the potential of phenotypic tests for detecting NDM production. <b>Materials & methods:</b> Singleplex PCR was used to detect <i>bla</i><sub>NDM</sub>. Phenotypic tests, including combination disc test (CDST) and modified Hodge test (MHT), were evaluated for NDM production. <b>Results:</b> Among 338 CR isolates, 47.63% were MDR, whereas 52.36% were XDR with 53.25% carrying <i>bla</i><sub>NDM</sub>. MHT was found to be discriminative for detecting NDM production, whereas no significant association was observed for CDST. <b>Conclusion:</b> The high incidence of CR and MDR and XDR isolates possessing <i>bla</i><sub>NDM</sub> presents an impending threat in therapeutics. Limitations of phenotypic tests suggest better testing, including molecular detection of the enzyme. The study addresses the emergence of New Delhi Metallo-β-lactamases (NDM) as a cause of carbapenem resistance with its scope limited to Pakistan. 47.63% MDR and 52.36% XDR isolates among 338 carbapenem resistance isolates where 53.25% possessing <i>bla</i><sub>NDM</sub> gene reflects the high prevalence of <i>bla</i><sub>NDM</sub> in the region. Phenotypic tests, including modified hodge test (MHT) and combination disc test (CDST), were evaluated for NDM detection accuracy where MHT demonstrated significant discriminative accuracy (p = 0.03) in detecting NDM production, while CDST did not show a significant association (p = 0.12). Sequencing analysis revealed the dominance of NDM-1 and NDM-5 variants, underscoring their prevalence in the region. The presence of <i>NDM-1</i> and <i>NDM-5</i> variants among in-patients and out-patients highlights the dissemination of <i>bla</i><sub>NDM</sub> and poses challenges in therapeutic interventions. Limitations of phenotypic tests emphasize the need for improved testing strategies, including molecular detection, to accurately identify carbapenemase-producing isolates.
DOI: 10.6084/m9.figshare.26509720.v1
title: New Delhi metallo-β-lactamases among extensively drug-resistant clinical isolates from Lahore, Pakistan

description: <b>Aim:</b> The study determines rates of carbapenem resistance (CR) and frequency of <i>bla</i><sub>NDM</sub> in multidrug-resistance (MDR) or extensive drug resistance (XDR), and evaluates the potential of phenotypic tests for detecting NDM production. <b>Materials & methods:</b> Singleplex PCR was used to detect <i>bla</i><sub>NDM</sub>. Phenotypic tests, including combination disc test (CDST) and modified Hodge test (MHT), were evaluated for NDM production. <b>Results:</b> Among 338 CR isolates, 47.63% were MDR, whereas 52.36% were XDR with 53.25% carrying <i>bla</i><sub>NDM</sub>. MHT was found to be discriminative for detecting NDM production, whereas no significant association was observed for CDST. <b>Conclusion:</b> The high incidence of CR and MDR and XDR isolates possessing <i>bla</i><sub>NDM</sub> presents an impending threat in therapeutics. Limitations of phenotypic tests suggest better testing, including molecular detection of the enzyme. The study addresses the emergence of New Delhi Metallo-β-lactamases (NDM) as a cause of carbapenem resistance with its scope limited to Pakistan. 47.63% MDR and 52.36% XDR isolates among 338 carbapenem resistance isolates where 53.25% possessing <i>bla</i><sub>NDM</sub> gene reflects the high prevalence of <i>bla</i><sub>NDM</sub> in the region. Phenotypic tests, including modified hodge test (MHT) and combination disc test (CDST), were evaluated for NDM detection accuracy where MHT demonstrated significant discriminative accuracy (p = 0.03) in detecting NDM production, while CDST did not show a significant association (p = 0.12). Sequencing analysis revealed the dominance of NDM-1 and NDM-5 variants, underscoring their prevalence in the region. The presence of <i>NDM-1</i> and <i>NDM-5</i> variants among in-patients and out-patients highlights the dissemination of <i>bla</i><sub>NDM</sub> and poses challenges in therapeutic interventions. Limitations of phenotypic tests emphasize the need for improved testing strategies, including molecular detection, to accurately identify carbapenemase-producing isolates.
DOI: 10.15468/dl.t7v9yr
title: Occurrence Download

description: A dataset containing 70 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is National Herbarium of Victoria (MEL) AVH data",
 "Geometry POLYGON((101.41928 8.34448,109.47807 8.34448,109.47807 15.11609,101.41928 15.11609,101.41928 8.34448))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 70 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053918-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.10684035
title: Supplementary Data: Human settlement pressure drives slow-moving landslide exposure

description: These datasets (.Rmd, .Rroj., .rds) are ready to use within the R software for statistical programming with the R Studio Graphical User Interface (https://posit.co/download/rstudio-desktop/). Please copy the folder structure into one single directory and follow the instructions given in the .Rmd file. Files and folders are described in the README.md file

0_ferrer_etal_2024.Rproj

README.md

1_R_Notebook:



SlowMovingLandslide_Exposure.rmd

Ferrer2024_FloodExposureAnalysis.Rmd


2_data:



1_input:



sm_database_2023_01_17.csv

sm_database_references.pdf

gmba_v2

ipcc_regions

natrual_earth



2_processed:



model_data_2023_01_17.csv

summary_database.csv




3_results:



1_model



2023_12_31.model.rds



2_figures:



main_figure_elements



3_ext_figures


4_manuscript_figures:



1_main figures

2_extended_figures


5_floding_analysis:



flood_comp_mod.csv

flood_comp_model.rds
DOI: 10.5281/zenodo.10684036
title: Supplementary Data: Human settlement pressure drives slow-moving landslide exposure

description: These datasets (.Rmd, .Rroj., .rds) are ready to use within the R software for statistical programming with the R Studio Graphical User Interface (https://posit.co/download/rstudio-desktop/). Please copy the folder structure into one single directory and follow the instructions given in the .Rmd file. Files and folders are described in the README.md file

0_ferrer_etal_2024.Rproj

README.md

1_R_Notebook:



SlowMovingLandslide_Exposure.rmd


2_data:



1_input:



sm_database_2023_01_17.csv

sm_database_references.pdf

gmba_v2

ipcc_regions

natrual_earth



2_processed:



model_data_2023_01_17.csv

summary_database.csv




3_results:



1_model



2023_12_31.model.rds



2_figures:



main_figure_elements



3_ext_figures


4_manuscript_figures:



1_main figures

2_extended_figures
DOI: 10.5281/zenodo.12549429
title: Supplementary Data: Human settlement pressure drives slow-moving landslide exposure

description: These datasets (.Rmd, .Rroj., .rds) are ready to use within the R software for statistical programming with the R Studio Graphical User Interface (https://posit.co/download/rstudio-desktop/). Please copy the folder structure into one single directory and follow the instructions given in the .Rmd file. Files and folders are described in the README.md file

0_ferrer_etal_2024.Rproj

README.md

1_R_Notebook:



SlowMovingLandslide_Exposure.rmd

Ferrer2024_FloodExposureAnalysis.Rmd


2_data:



1_input:



sm_database_2023_01_17.csv

sm_database_references.pdf

gmba_v2

ipcc_regions

natrual_earth



2_processed:



model_data_2023_01_17.csv

summary_database.csv




3_results:



1_model



2023_12_31.model.rds



2_figures:



main_figure_elements



3_ext_figures


4_manuscript_figures:



1_main figures

2_extended_figures


5_floding_analysis:



flood_comp_mod.csv

flood_comp_model.rds
DOI: 10.15468/dl.psz2st
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "Geometry" : [
 "MULTIPOLYGON (((147.547539 -35.919841, 147.547539 -35.928824, 147.522836 -35.928824, 147.522836 -35.942299, 147.525081 -35.942299, 147.525081 -35.940053, 147.547539 -35.940053, 147.547539 -35.935562, 147.552031 -35.935562, 147.552031 -35.933316, 147.554277 -35.933316, 147.554277 -35.919841, 147.547539 -35.919841)), ((147.554277 -35.933316, 147.554277 -35.935562, 147.56326 -35.935562, 147.56326 -35.933316, 147.554277 -35.933316)))"
 ]
}

 The dataset includes 60 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0053919-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21335/nmdc-1808091054
title: Monitoring Blue Mussel distribution – Baseline survey for 2021 and 2022

description: Mussels (Mytilus sp.) are widespread along the entire coast of Norway. In the last 15 years, the Institute of Marine Research (HI) has received reports that mussels have disappeared from places where mussels were usually collected. In 2020, HI developed a method to monitor regional populations of mussels. The goal of monitoring is to clarify whether the mussel populations are changing over time. If the stock is changing, the monitoring will also provide a data set to uncover possible reasons for changes. The monitoring started in 2021 and has been carried out for four regions (East (Oslofjord), South (Agder), West (Hardangerfjord) and North (Tromsø). Within each region, 50 – 100 stations along the intertidal zone were examined. Each station covers about 100 meters of coastline. All stations were randomly selected and the occurrence of mussels was determined and logged according to the following categories: 2 continuous cover, 1 patchy distribution or 0 few or no mussels. This dataset covers the baseline surveys for the years 2021 and 2022, which shows that mussels occur in all regions, from the innermost fjord to the exposed coast.