cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17863/cam.58532
title: Structural models of ovine SLAMF1 and PPRV hemagglutinin

description: Atomic coordinates for models of peste des petits ruminants virus (PPRV) hemagglutinin (H) and ovine SLAMF1. Models were generated using the I-TASSER Web server [Zhang Y. 2008. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9:40. doi:10.1186/1471-2105-9-40] and the measles virus H and marmoset SLAMF1 structures from PDB 3ALX [Hashiguchi T, Ose T, Kubota M, Maita N, Kamishikiryo J, Maenaka K, Yanagi Y. 2011. Structure of the measles virus hemagglutinin bound to its cellular receptor SLAM. Nat Struct Mol Biol 18:135–141. doi:10.1038/nsmb.1969] as templates, respectively.
DOI: 10.6084/m9.figshare.c.3618773_d4
title: Additional file 1: Table S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

description: List of P. rhodozyma putative orphan genes. (XLS 44 kb)
DOI: 10.17863/cam.58286
title: Research data supporting 'Multi-tissue and multi-isotope (δ13C, δ15N, δ18O and 87/86Sr) data for early medieval human and animal palaeoecology'

description: This dataset is the result of the first author's PhD research in the Department of Archaeology, University of Cambridge from 2016-2020 entitled "Tell me what you eat, and I will tell you who you are’: A Multi-Tissue and Multi-Scalar Isotopic Study of Diet and Mobility in Early Medieval England and its European Neighbours". It is a compilation of primary isotopic work and data from published literature. The dates of publication of data included range from 1995-2019. The core objective was to construct a standardised and consistent dataset within which would sit our own primary isotope data, detailing contextual data for sites/cemeteries and the associated bio-cultural data for the human burials and fauna analysed for various isotope ratios. Ultimately this dataset should enable easy meta-analyses of the available data. The geographical range of the data is within Europe, and the chronological scope of archaeological sites includes Roman Iron Age sites through to High Medieval. It includes carbon and nitrogen stable isotope data from human and animal collagen (bones and dentine) as well as carbon, oxygen and strontium data from bioapatite (tooth enamel and bone). Published data was collated using Web of Science and Google searches as well as from archaeological site reports and occasionally additional data was provided when requested from authors (details in the reference column of each sheet). Full details of standardisation methods, site and bio-cultural data decisions can be found in the associated publication.
DOI: 10.6084/m9.figshare.c.3618773_d5
title: Additional file 7: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

description: Protein multiple sequence alignment used for cladogram construction (related to Fig. 3). (NEX 1505 kb)
DOI: 10.6084/m9.figshare.c.3618788_d1
title: Additional file 1: of A transgenic male-only strain of the New World screwworm for an improved control program using the sterile insect technique

description: Female lethality data for C. hominivorax FL11 and FL12 homozygous lines. (XLSX 38 kb)
DOI: 10.6084/m9.figshare.c.3618773_d6
title: Additional file 4: Table S4. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

description: List of mating genes of P. rhodozyma. (XLSX 192 kb)
DOI: 10.17863/cam.52036
title: Machine learning to predict mesenchymal stem cell efficacy for cartilage repair

description: We collected data from 36 published articles on PubMed [13–48] to train and validate our machine learning models. Some articles comprised more than one type of cartilage injury models or treatment condition. In total, 15 clinical trial conditions and 29 animal 66 model conditions (1 goat, 6 pigs, 2 dogs, 9 rabbits, 9 rats, and 2 mice) on osteochondral injury or osteoarthritis were included, where MSCs were transplanted to repair the cartilage tissue. We documented each case with specific treatment condition into an entry by considering the cell- and treatment target-related factors as input properties, including species, body weight, tissue source, cell number, cell concentration, defect area, defect depth, and type of cartilage damage. The therapeutic outcomes were considered as output properties, which were evaluated using integrated clinical and histological cartilage repair scores, including the international cartilage repair society (ICRS) scoring system, the O’Driscoll score, the Pineda score, the Mankin score, the osteoarthritis research society international (OARSI) scoring system, the international knee documentation committee (IKDC) score, the visual analog score (VAS) for pain, the knee injury and osteoarthritis outcome score (KOOS), the Western Ontario and McMaster Universities Osteoarthritis Index (WOMAC), and Lyscholm score. In this study, these scores were linearly normalized to a number between 0 and 1, with 0 representing the worst damage or pain, and 1 representing the completely healthy tissue. The list of entries was combined together to form a database. We have provided the details for the imputation algorithm in the subsection Handling missing data under Methods and a flowchart in Fig 2. Data imputation algorithm for the vector x was added in the manuscript for illustration. The pseudo-code for uncertainty calculation was shown in S1 Algorithm: A ensemble model to measure the ANN's prediction uncertainty. The original database gathered from the literature, and a ‘complete’ database with missing information filled from our neural network are also included, along with a sample neural network architecture file in Python. Here we provide a Python notebook comprising a neural network that delivers the performance and results described in the manuscript. Documentation in the form of comments and installation guide is included in the Python notebook. This Python notebook along with the methods described in the manuscript provides sufficient details for other interested readers to either extend this script or write their own scripts and reproduce the results in the paper.
DOI: 10.17863/cam.17140
title: Research data supporting "A SANS and APT study of precipitate evolution and strengthening in a maraging steel"

description: Small angle neutron scattering (SANS)j and imaging atom probe field ion microscope data on a marageing steel destined for aerospace applications. The steel is strengthened with NiAl and Laves phase precipitates and is designed to be strong at both ambient and elevated temperatures, while maintaining a panoply of other properties such as machinability, fatigue resistance, toughness, creep strength and coatability.
DOI: 10.6084/m9.figshare.c.3618785_d3
title: Additional file 2: Table S2. of Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

description: Overview of the three flagellar loci found in C. bolteae. (XLSX 14 kb)
DOI: 10.6084/m9.figshare.c.3618773_d7
title: Additional file 2: Table S2. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

description: NCBI public sequences found in P. rhodozyma CBS 7918T. (XLS 1327 kb)
DOI: 10.6084/m9.figshare.c.3618788_d4
title: Additional file 2: of A transgenic male-only strain of the New World screwworm for an improved control program using the sterile insect technique

description: Female lethality data for C. hominivorax FL11 and FL12 heterozygous lines. (XLSX 36 kb)
DOI: 10.6084/m9.figshare.c.3618785_d4
title: Additional file 4: Table S4. of Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

description: Metabolic pathways for butyrate. (XLSX 11 kb)
DOI: 10.6084/m9.figshare.c.3618773_d8
title: Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

description: List of orphan genes with links to PFAM (related to Additional file 1: Table S1). (ZIP 1428 kb)
DOI: 10.6084/m9.figshare.c.3618785_d5
title: Additional file 1: Table S1. of Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

description: Lactose operons of C.bolteae and C. clostridioforme. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3618794_d1
title: MOESM2 of 360 degree perspective on allergic rhinitis management in Italy: a survey of GPs, pharmacists and patients

description: Additional file 2: Summary statistics of the responses for each group (GPs, pharmacists and patients).
DOI: 10.17863/cam.101565
title: Research data supporting "Continuous Gas-phase Synthesis of Iron Nanoparticles at Ambient Conditions with Controllable Size and Polydispersity"

description: The dataset contains the experimental results from Scanning Mobility Particle Sizer for different reactor designs, supporting Fig. 2 and Fig. 4 in the associated publication. Each csv file contains the fitted results after fitting a lognormal distribution to the particle size distribution, the main carrier gas flow rate in slpm (q1), the precursor carrier gas gas flow rate in sccm (q2), the corona discharge voltage in kV (HV), the discharge current in uA (current), whether the neutraliser is in-place for the scanning (NEU), calculated precursor concentration in ppb (Fe_conc), calculated volumetric particle yield in nm^3/cm^3 (yield), calculated power input in mW (power).
DOI: 10.6084/m9.figshare.c.3618785_d8
title: Additional file 3: Table S3. of Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

description: Overview of the flagellar locus found in C. clostridioforme. (XLSX 13 kb)
DOI: 10.17863/cam.7281
title: Stimulus materials for Farmer, Baron-Cohen, and Skylark. People with autism spectrum conditions make more consistent decisions.

description: This document contains the stimulus materials for Farmer, Baron-Cohen, and Skylark, People with Autism Spectrum Conditions make more consistent decisions. Psychological Science.
DOI: 10.60656/0ce54a1ad42843de
title: Custom collection of categorize, classification, disdrometer, drizzle, droplet effective radius, and 11 other products from Lindenberg on 18 Oct 2024
DOI: 10.17863/cam.91144
title: Research data supporting Graphene-Black Phosphorus Printed Photodetectors

description: Data are generated based on experimental results such as Raman, Scanning tunneling electron microscopy, atomic force microscopy, Absorption spectroscopy, transmission electron microscopy, x-ray photoelectron spectroscopy, inkjet printing, chemical vapor deposition, electrical characterizations, bending tests, and theoretical calculations for theoretical absorption of the photodetector.
DOI: 10.17863/cam.57937
title: Research data supporting "Electro-Responsive Surfaces with Controllable Wrinkling Patterns for Switchable Light Reflection-Diffusion-Grating Devices"

description: Research data [OpenData.zip] file contains original optical microscope images and experimental data in the main text of the manuscript and supporting information. The original images contain original scales. Data_final.xlsx contains data files for the graphs, such as simulation results, wrinkling pattern analysis data, and surface topology, discussed in the main text of the manuscript and the supporting information.
DOI: 10.17863/cam.75713
title: Research data supporting "Understanding changes to children's connection to nature during the Covid-19 pandemic and implications for child well-being"

description: Data were collected from 29 April 2020 until 6 July 2020 as part of the i-FAMS-Covid Consortium. Parents with a child between the ages of 3-and 7-years-old responded to the survey with reference to one target child. In this subsample (n=376) of the main UK survey sample (nUK=706), limited to parents who responded to at least one of the current study’s key questions, parent respondents had a mean age of 37.93 years (n=367, range=21-55, SD=5.74), 90% of respondents were female (n=338), and 93.3% reported their ethnicity as White (n=280). 52.3% of target children were male (n=195) and the mean age of the children was 6.06 years (n=376, range=3.86-7.97 years, SD=1.07). Connection to nature - Our analyses focussed on parental responses to two survey questions: a forced ‘Yes / No’ response to the question “Overall, do you think your child’s connection to nature has changed?” and a free text justification question “If yes, how do you think your child’s connection to nature has changed and why?” In total, 376 parents responded, of whom 372 answered the forced response question and 307 included a text-based response. We used qualitative content analysis to examine parents’ text-based answers. Socio-economic status - A composite measure of family socioeconomic status was created as the mean Z-score of parent/caregiver reported highest level of parental education, parent occupation category, and spaciousness and number of bedrooms in the family home. A higher score on this composite variable indicated higher socioeconomic status. Parent occupation and the occupation of the other primary parent/caregiver was coded based on categorisations from the United Kingdom’s Office for National Statistics Standard Occupation Classification (ONS, 2020a). Spaciousness of the family’s residence was reported by parents/caregivers as either ‘small and cramped,’ ‘small but adequate,’ ‘quite spacious,’ or ‘very spacious’. Additionally, parents were also asked if their child was eligible for pupil premium. 60 parents indicated that their child was eligible for pupil premium, and as expected, these families has a significantly lower score on the composite SES variable (M = -0.74, SD = .56), compared to children ineligible for pupil premium (M = .11, SD = .58), t(369) = 10.50, p &lt; 0.001. Covid disruption - Covid disruption was determined based upon survey responses to the extent to which a family experienced impacts from Covid-19 in the form of financial strain, impacts to work situation, family conflict and worry; this was based upon work by Prime et al. (2020). Child well-being - Parents/caregivers completed the Strengths and Difficulties Questionnaire (SDQ) (Goodman, 1997) for the target child during the pandemic. Responses are scored based upon a 3-point Likert scale (not true, somewhat true, and certainly true). In this sample, internal consistencies were good (Cronbach ɑ for behavioural problems = .81; emotional problems = .76).
DOI: 10.17863/cam.6609
title: Research data supporting "The ancestral ochrophyte plastid proteome"

description: This database contains nxs format files containing 100 RAxML trees, for each of the ancestral plastid proteins referenced in the above study. The taxa names in the tree files have been recoded to their original fasta format, for improved legibility.
DOI: 10.6084/m9.figshare.c.3618809_d5
title: MOESM3 of What are the effects of nature conservation on human well-being? A systematic map of empirical evidence from developing countries

description: Additional file 3: Appendix 3. Included articles. Table S3. List of included articles.
DOI: 10.17863/cam.8155
title: Research data supporting "What’s missing in geographical parsing?"

description: Full code and data required for replication and experimentation.
DOI: 10.6084/m9.figshare.c.3618839_d1
title: Additional file 1: of Significance bias: an empirical evaluation of the oral health literature

description: Functions to scrape P-values from Pubmed abstracts. (TXT 5 kb)
DOI: 10.6084/m9.figshare.c.3618842_d1
title: Additional file 1: of Phosphodiesterases in non-neoplastic appearing colonic mucosa from patients with colorectal neoplasia

description: qPCR data for PDE10A. (XLSX 44 kb)
DOI: 10.17863/cam.42392
title: Cleaning of toothpaste from vessel walls by impinging liquid jets and their falling films: quantitative modelling of soaking effects: Data and Supplementary Information

description: The read.me text file provides a detailed description of the methods used. The Microsoft Excel file contains the data from the plots presented in the paper and a graphical presentation.
DOI: 10.6084/m9.figshare.c.3618818_d5
title: Additional file 1: of Introducing Explorer of Taxon Concepts with a case study on spider measurement matrix building

description: Original input. The original input used in the experiment. (TXT 296Â kb)
DOI: 10.6084/m9.figshare.c.3618824_d7
title: Additional file 2: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of all predicted miRNA loci in the rainbow trout genome with functional, structural and conservation annotation. The list of the 3270 predicted miRNA loci that have been discovered in the study. For each loci, the file gives information about basic information (miRNA id, chromosome location, start and stop of the pre-miR, strand, expresion information, prediction score, pre-miRNA sequence, miRNA sequence, pre-miRNA length and miRNA length), structural annotation (genomic position regarding protein coding genes with sRNA browse annotation or intron annotation), functional annotation for both the pre-miRNA and the mature miRNA (mirbase, Rfam, tRNAs, rRNA or repeat elements annotation) and conservation annotation (conservation of rainbow trout loci in 8 fish species, nm = number of mismatch). (XLSX 1068 kb)
DOI: 10.6084/m9.figshare.c.3618824_d8
title: Additional file 6: of Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing

description: List of novel miRNA in the rainbow trout. The list of the 94 predicted new miRNA loci that have been discovered with high confidence in the study. For each loci, the file gives information about: name, miRNA locus ID (same name as in Additional file 4), chromosome location, start and stop of the pre-miR, strand, length of the pre-miR, prediction score, DNA sequence of the pre-miR. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3618860_d1
title: Additional file 2: Table S2. of Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues

description: Proteins identified in soluble and pellet (aggregated) fraction by Mascot along with their emPAI. Table S3. Unique deamidated peptides identified in pellet fraction and sites of modifications. (XLSX 740Â kb)
DOI: 10.6084/m9.figshare.c.3618866_d1
title: Additional file 1: of Problem-based learning for radiological technologists: a comparison of student attitudes toward plain radiography

description: Visual analog scale scores before and after practical training: This is raw data necessary for analysis in this study. Cross tables are composed of 43 students and 50 adjective pairs. Scores take values from 0.0 to 100.0. (XLSX 39 kb)
DOI: 10.4228/zalf.dk.167
title: Weather Data 2020, Müncheberg, Germany

description: The automatic weather station Müncheberg was installed in 1991 by the Leibniz Centre for Agricultural Landscape Research (ZALF) e.V. and is managed by the Institute of Landscape System Analysis. The station is located within the municipality Müncheberg, district Märkisch-Oderland, state Brandenburg, Germany. Altitude in meter: 62 NN, Geographic latitude: 52,517681 N, Geographic longitude: 14,123200 E,Type: FMA 86. In 2001, the station was replaced by a new system of the same type (Lambrecht SYMNET/IND). In 2020, data have been collected for: soil temperatur in 20cm depth (°C); soil temperatur in 5cm depth (°C); soil temperatur in 50cm depth (°C); soil temperatur in 10cm depth (°C); soil temperatur in 100cm depth (°C); global radiation (J/cm²); relative humidity (%); air temperature, 2m above ground (°C); precipitation (mm); wind velocity (m/s); evaporation (mm).
DOI: 10.6084/m9.figshare.c.3618860_d2
title: Additional file 1: Table S1A. of Dementia-linked amyloidosis is associated with brain protein deamidation as revealed by proteomic profiling of human brain tissues

description: Total Proteins (including contaminants and decoy hits) identified in soluble and pellet (aggregated) fraction by Maxquant. Table S1B. Human proteins identified in soluble and pellet (aggregated) fraction by Maxquant. Table S1C. Human proteins enriched in aggregated fraction as identified in both soluble and pellet (aggregated) fractions by Maxquant. Table S1D. Human proteins enriched in aggregated fraction as identified mainly in pellet (aggregated) fraction by Maxquant. Table S1E. Unique deamidated peptides identified in pellet fraction and sites of modifications. Annotated MS_MS spectra_in Maxquant Annotated MS_MS spectra in Mascot Peptide View. (XLSX 6872Â kb)
DOI: 10.17863/cam.8175
title: Research data supporting 'Measurement of the Small-Scale Structure of the Intergalactic Medium Using Close Quasar Pairs'

description: These data includes observations conducted with the MagE spectrograph at 'Las Campanas' observatory, in April 2008 and March 2009. They were obtained targeting quasar pairs separated by small angles in the sky and are not publicly available in other archives. These quasar pair spectra are part of a larger dataset used to measure the transverse coherence in the absorption due to the effect of thermal pressure in the intergalactic medium of the ancient universe. The repository contains both science and calibration frames, as marked in the header of each files. More information about the targets and the observing run can be found in Prochaska, Hennawi et al,2013 ApJ, 776, 136
DOI: 10.17863/cam.111227
title: Research data supporting "Strain Heterogeneity and Extended Defects in Halide Perovskite Devices"

description: Datasets accompanying "Strain Heterogeneity and Extended Defects in Halide Perovskite Devices". Bragg coherent diffraction data was acquired at beamline I13-1 (Diamond Light Source), with reconstructions performed with the MATLAB script provided. Device fabrication, as well as: photoluminescence, powder X-ray diffraction, scanning electron microscopy, current-voltage measurements were performed at home institutions. Please also refer to the README files contained within each of the subfolders.