cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.18328404
title: JADES Origins Field (JWST GTO-4540) NIRCam F322W2 + F356W + F444W Grism Spectroscopic Redshift Catalog

description: JADES Origins Field (JWST GTO-4540) NIRCam Grism Spectroscopic Redshift Catalog     - release 1.0.0

    Sun, F. et al. (2026; arXiv:2601.15961).      https://arxiv.org/abs/2601.15961    Contact: fengwu.sun[at]cfa.harvard.edu

------------------------------------------------
Descriptions of columns:ID:     Source ID based on JADES internal v095_v10_rc2, matched to JADES DR5 (Robertson, B. et al. 2026).
RA:     J2000.0 R.A.  (unit: degree)DEC:    J2000.0 Decl. (unit: degree)zspec:  NIRCam grism spectroscopic redshifts
zconf:  Confidence of zspec following the criteria of Lin et al. (2026, arXiv:2504.08028)
        zconf=6 for the most confident redshifts determined by >= two line detections and |dz| <= 0.2;
        zconf=1 for the least confident redshifts determined by single line and |dz| >= 1.nlines: number of emission lines detected at S/N>=3
name:   Names of emission lines detected, separated by delimiter |
wave:   Observed wavelengths of emission line centroids (unit: micron), separated by delimiter |
DOI: 10.5281/zenodo.18328403
title: JADES Origins Field (JWST GTO-4540) NIRCam F322W2 + F356W + F444W Grism Spectroscopic Redshift Catalog

description: JADES Origins Field (JWST GTO-4540) NIRCam Grism Spectroscopic Redshift Catalog     - release 1.0.0

    Sun, F. et al. (2026; arXiv:2601.15961).      https://arxiv.org/abs/2601.15961    Contact: fengwu.sun[at]cfa.harvard.edu

------------------------------------------------
Descriptions of columns:ID:     Source ID based on JADES internal v095_v10_rc2, matched to JADES DR5 (Robertson, B. et al. 2026).
RA:     J2000.0 R.A.  (unit: degree)DEC:    J2000.0 Decl. (unit: degree)zspec:  NIRCam grism spectroscopic redshifts
zconf:  Confidence of zspec following the criteria of Lin et al. (2026, arXiv:2504.08028)
        zconf=6 for the most confident redshifts determined by >= two line detections and |dz| <= 0.2;
        zconf=1 for the least confident redshifts determined by single line and |dz| >= 1.nlines: number of emission lines detected at S/N>=3
name:   Names of emission lines detected, separated by delimiter |
wave:   Observed wavelengths of emission line centroids (unit: micron), separated by delimiter |
DOI: 10.15468/dl.p7atyk
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Pseudobambusa",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005857-260126135527185/datasets/export for details.
DOI: 10.15468/dl.qrnpuu
title: Occurrence Download

description: A dataset containing 1839 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Rosa palustris",
 "HasCoordinate is true",
 "BasisOfRecord is one of (Specimen)"
 ]
}

 The dataset includes 1839 records from 112 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005858-260126135527185/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5061/dryad.q8q11
title: Data from: Genome-wide single nucleotide polymorphism (SNP) identification and characterization in a non-model organism, the African buffalo (Syncerus caffer), using next generation sequencing

description: This study aimed to develop a set of SNP markers with high resolution and
 accuracy within the African buffalo. Such a set can be used, among others,
 to depict subtle population genetic structure for a better understanding
 of buffalo population dynamics. In total, 18.5 million DNA sequences of 76
 bp were generated by next generation sequencing on an Illumina Genome
 Analyzer II from a reduced representation library using DNA from a panel
 of 13 African buffalo representative of the four subspecies. We identified
 2534 SNPs with high confidence within the panel by aligning the short
 sequences to the cattle genome (Bos taurus). The average sequencing depth
 of the complete aligned set of reads was estimated at 5x, and at 13x when
 only considering the final set of putative SNPs that passed the filtering
 criterion. Our set of SNPs was validated by PCR amplification and Sanger
 sequencing of 15 SNPs. Of these 15 SNPs, 14 amplified successfully and 13
 were shown to be polymorphic (success rate: 87%). The fidelity of the
 identified set of SNPs and potential future applications are finally
 discussed.
description: List of identified SNPs-
 Syncerus cafferThe excel file contains
 the list of 'Single Nucleotide Polymorphism' markers that were
 identified within the African buffalo species (4 subspecies included). A
 legend to each column is provided.SNP Syncerus caffer-
 Smitz.xlsx
DOI: 10.5061/dryad.9m63g
title: Data from: Inbreeding depression in intra-provenance crosses driven by founder relatedness in white spruce

description: Genetic means for height growth differed between intra- and
 inter-provenance crosses, which we hypothesized was due partly to
 unidentified relatedness among intra-provenance base parents resulting in
 mild inbreeding and inbreeding depression among their offspring. A dense
 array of 5,844 single nucleotide polymorphisms was used to directly
 construct a genomic relationship matrix (G) that had four elements ranging
 from 0.17 to 0.24, between five intra-provenance base parents. Adjusting
 the numerator relationship matrix for this relatedness among base parents
 produced inbreeding coefficients of F i ≈ 0.1 in their offspring, which
 displayed depressed height growth. Accounting for inbreeding level as a
 covariate in a mixed model decreased grossly overestimated (up to 2 ×)
 dominance variance in models without the covariate adjustment. Height
 growth decreased 39 cm (∼ 6 %) for every 0.1 increase in F i .
description: Phenotypes, pedigrees
 & genotypes for experiment E970See README (also in
 archive)data.tar.gz
DOI: 10.5061/dryad.642p1
title: Data from: The consequences of sexual selection in well-adapted and maladapted populations of bean beetles

description: Whether sexual selection generally promotes or impedes population
 persistence remains an open question. Intralocus sexual conflict (IaSC)
 can render sexual selection in males detrimental to the population by
 increasing the frequency of alleles with positive effects on male
 reproductive success but negative effects on female fecundity. Recent
 modelling based on fitness landscape theory, however, indicates that the
 relative impact of IaSC may be reduced in maladapted populations and that
 sexual selection therefore might promote adaptation when it is most
 needed. Here, we test this prediction using bean beetles that had
 undergone 80 generations of experimental evolution on two alternative host
 plants. We isolated and assessed the effect of maladaptation on
 sex-specific strengths of selection and IaSC by cross-rearing the two
 experimental evolution regimes on the alternative hosts and estimating
 within-population genetic (co)variance for fitness in males and females.
 Two key predictions were upheld: males generally experienced stronger
 selection compared to females and maladaptation increased selection in
 females. However, maladaptation consistently decreased male-bias in the
 strength of selection and IaSC was not reduced in maladapted populations.
 These findings imply that sexual selection can be disrupted in stressful
 environmental conditions, thus reducing one of the potential benefits of
 sexual reproduction in maladapted populations.
description: Data_the consequences of
 sexual selection in well adapted and maladapted
 populationsThe file contains
 lifetime reproductive success data of the seed beetle acanthoscelides
 obtectus."offspring" is the absolute number of offspring per
 individual, "relfit" is relative fitness, standardized by mean
 fitness within subsets of the data as indicated in the titles (for
 example, relfit_sex,or,tr is relative fitness standardized by the mean
 within each sex, environment of origin and assay environment combination,
 which was the main response variable used in the
 analysis).
DOI: 10.5061/dryad.f47h1
title: Data from: Accurate geometries for “mountain pass” regions of the Ramachandran plot using quantum chemical calculations

description: Unusual local arrangements of protein in Ramachandran space is not well
 represented by standard geometry tools used in either protein structure
 refinement using simple harmonic geometry restraints or in protein
 simulations using molecular mechanics force fields. By contrast, quantum
 chemical computations using small poly-peptide molecular models can
 predict accurate geometries for any well-defined backbone Ramachandran
 orientation. For conformations along transition regions – ϕ from -60 to
 60° – a very good agreement with representative high-resolution
 experimental X-ray (≤1.5 Å) protein structures is obtained for both
 backbone C^{-1}-N-C_{alpha} angle and the nonbonded O^{-1}…C distance,
 while “standard geometry” leads to the “clashing” of O…C atoms and Amber
 FF99SB predicts distances too large by about 0.15 Å. These results confirm
 that quantum chemistry computations add valuable support for detailed
 analysis of local structural arrangements in proteins, providing improved
 or missing data for less understood high-energy or unusual regions.
description: Dipeptide structures
 along whole Ramachandran plotRelative energies and
 structures along the whole Ramachandran plot were obtained from quantum
 chemical calculations for Alanine dipeptide (AcAlaNH2). The relaxed
 two-dimensional (2D) scan has been computed at the B3LYP-D3 level with
 double-zeta plus polarisation SNSD basis set by varying the Psi and Phi
 dihedral angles from -180 to 180°, in 10° intervals. In the relaxed 2D
 scan all other structural parameters have been fully optimized. Dataset
 reports Energies and Cartesian coordinates for each of 1369 points in 2D
 scan. These quantum mechanical computations performed using the small
 dipeptide molecular model match well Ramachandran plot with energetically
 allowed large basin corresponding to the α-helix and β-sheet and predicted
 very accurate structural parameters within the local arrangement for
 unusual high-energy conformations.AcAlaNH2_2DScan_RamaPsiPhi_B3LYPD3.rar
DOI: 10.5061/dryad.0732g
title: Data from: Tempo and mode of flower color evolution

description: Premise of the study: Flower color is one of the best-studied floral
 traits in terms of its genetic basis and ecological significance, yet few
 studies have examined the processes that shape its evolution across deep
 timescales. Advances in comparative methods along with larger phylogenies
 for floral radiations offer new opportunities for investigating the
 macroevolution of flower color. Methods: We examined the tempo and mode of
 flower color evolution in four clades (Antirrhineae, Iochrominae,
 Loeselieae, Quamoclit) using models that incorporate trait transitions and
 lineage diversification. Focusing on floral anthocyanin pigmentation, we
 estimated rates of gain and loss of pigmentation and tested whether these
 changes occur predominantly through anagenesis or cladogenesis. Key
 results: We found that the tempo of pigment gains and losses varied
 significantly across the clades and that the rates of change were often
 asymmetrical, favoring gains over losses. The mode of color shifts tended
 to be cladogenetic, particularly for gains of color; however, this trend
 was not significant. Conclusions: Given that all flowering plants share
 the same pathway for producing anthocyanins, the marked variation in the
 tempo of transitions across the four groups suggests differences in the
 selective forces acting on floral pigmentation. These ecological and
 physiological factors, together with genetic basis for color, may also
 explain the bias toward gains of floral anthocyanins. Estimates for
 cladogenetic and anagenetic rates suggest that color transitions can occur
 through both modes, although testing their relative importance will
 require larger datasets.
description: Flower color
 datasetsThe zip folder includes
 four datasets: Antirrhineae, Iochrominae, Loeselieae, and Quamoclit. Each
 clade has a file with flower color scoring (.csv), a BEAST input file
 (.xml), and the subsampled trees (..BEAST100.nex) that were used for
 analyses. The .R scripts are for running the full model MCMC with
 diversitree. See manuscript for model description.ModeandTempoFlColor.zip
DOI: 10.5061/dryad.td237
title: Data from: Genetic and life-history changes associated with fisheries-induced population collapse

description: Over the recent years, growing number of studies suggests that intensive
 size-selective fishing can cause evolutionary changes in life-history
 traits in the harvested population, which can have drastic negative
 effects on populations, ecosystems and fisheries. However, most studies to
 date have overlooked the potential role of immigration of fish with
 different phenotypes as an alternative plausible mechanism behind observed
 phenotypic trends. Here, we investigated the evolutionary consequences of
 intensive fishing simultaneously at phenotypic and molecular level in
 Eurasian perch (Perca fluviatilis L.) population in the Baltic Sea over a
 24-year period. We detected marked changes in size- and age-distributions
 and increase in juvenile growth rate. We also observed reduction of age at
 sexual maturity in males that has frequently been considered to support
 the hypothesis of fisheries-induced evolution. However, combined
 individual-based life-history and genetic analyses indicated increased
 immigration of foreign individuals with different life-history patterns as
 an alternative mechanism behind the observed phenotypic change. This study
 demonstrates the value of combining genetic and phenotypic analyses and
 suggests that replacement or breakdown of locally adapted gene complexes
 may play important role in impeding the recovery of fish populations.
description: Fen_dataThe file 'Fen_data' consists of following Matsalu Bay perch information used in phenotypic analysis: sampling date, gear, total and standard length, total and standard weight, age, sex, maturity status and back-calculated length at different ages (SL1 to SL10).Gen_dataThe file 'Gen_data' consists of information used in population genetic analysis and includes: sampling site, sampling year, cohort and loci information.
DOI: 10.5061/dryad.k43t2
title: Data from: Opsin repertoire and expression patterns in horseshoe crabs: evidence from the genome of Limulus polyphemus (Arthropoda: Chelicerata)

description: Horseshoe crabs are xiphosuran chelicerates, the sister group to
 arachnids. As such, they are important for understanding the most recent
 common ancestor of Euchelicerata and the evolution and diversification of
 Arthropoda. Limulus polyphemus is the most investigated of the four extant
 species of horseshoe crabs, and the structure and function of its visual
 system have long been a major focus of studies critical for understanding
 the evolution of visual systems in arthropods. Likewise, studies of genes
 encoding Limulus opsins, the protein component of the visual pigments, are
 critical for understanding opsin evolution and diversification among
 chelicerates, where knowledge of opsins is limited, and more broadly among
 arthropods. In the present study, we sequenced and assembled a high
 quality nuclear genomic sequence of L. polyphemus and used these data to
 annotate the full repertoire of Limulus opsins. We conducted a detailed
 phylogenetic analysis of Limulus opsins, including using gene structure
 and synteny information to identify relationships among different opsin
 classes. We used our phylogeny to identify significant genomic events that
 shaped opsin evolution and therefore the visual system of Limulus. We also
 describe the tissue expression patterns of the 18 opsins identified and
 show that transcripts encoding a number, including a peropsin, are present
 throughout the central nervous system. In addition to significantly
 extending our understanding of photosensitivity in Limulus and providing
 critical insight into the genomic evolution of horseshoe crab opsins, this
 work provides a valuable genomic resource for addressing myriad questions
 related to xiphosuran physiology and arthropod evolution.
description: Lp_phyloseq_databaseSequence IDs, information on data source (e.g. genbank accession number) and species identities for sequences used in making the large opsin phylogeny.Lp_ALLOPSPhylip file of all sequences used in large opsin datasetLp_ALLOPS_newickNewick tree file for large opsin dataset phylogenyLpONLY.phyPhylip formatted file of Limulus opsin ONLY dataset.LpONLY_newickNewick tree file of Limulus opsin only phylogeny
DOI: 10.5061/dryad.5k4k4
title: Data from: Novel trophic niches drive variable progress toward ecological speciation within an adaptive radiation of pupfishes

description: Adaptive radiation is recognized by a rapid burst of phenotypic,
 ecological, and species diversification. However, it is unknown whether
 different species within an adaptive radiation evolve reproductive
 isolation at different rates. We compared patterns of genetic
 differentiation among nascent species within an adaptive radiation of
 Cyprinodon pupfishes using genotyping by sequencing. Similar to classic
 adaptive radiations, this clade exhibits rapid morphological
 diversification rates and two species are novel trophic specialists, a
 scale-eater and hard-shelled prey specialist (durophage), yet the
 radiation is less than 10,000 years old. Both specialists and an abundant
 generalist species all coexist in the benthic zone of lakes on San
 Salvador Island, Bahamas. Based on 13,912 single-nucleotide polymorphisms
 (SNPs), we found consistent differences in genetic differentiation between
 each specialist species and the generalist across seven lakes. The
 scale-eater showed the greatest genetic differentiation and clustered by
 species across lakes, whereas durophage populations often clustered with
 sympatric generalist populations, consistent with parallel speciation
 across lakes. However, we found strong evidence of admixture between
 durophage populations in different lakes, supporting a single origin of
 this species and genome-wide introgression with sympatric generalist
 populations. We conclude that the scale-eater is further along the
 speciation-with-gene-flow continuum than the durophage and suggest that
 different adaptive landscapes underlying these two niche environments
 drive variable progress toward speciation within the same habitat. Our
 previous measurements of fitness surfaces in these lakes support this
 conclusion: the scale-eating fitness peak may be more distant than the
 durophage peak on the complex adaptive landscape driving adaptive
 radiation.
description: SNP
 data13,912 SNPs called in
 50% of 69 individuals with no less than 95% missing data, minimum stack
 depth of 20 sequenced reads. Additional file of SNPs filtered for
 STRUCTURE analyses.Species and location for
 ID codes in all datasetsSpecies names and
 location data for ID codes in all datasets.RaxMLRaxML input SNP file and
 output maximum likelihood tree with bootstrap support.treemixTreemix and D-statistic input files in .ped and treemix formats along with output file of D-statistics (four-population tests).differentiation across lakesData from lakes on San Salvador Island, Bahamas: Fst genetic differentiation across species and lakes, log lake areas (m2), matrices of Fst differentiation and geographic distances between each pair of populations for each species; visual census abundance of each trophic specialist relative to abundance of generalist C. variegatus; and genetic diversity (pi) for each population and species.
DOI: 10.5061/dryad.6d186
title: Data from: Source population characteristics affect heterosis following genetic rescue of fragmented plant populations

description: Understanding the relative importance of heterosis and outbreeding
 depression over multiple generations is a key question in evolutionary
 biology and is essential for identifying appropriate genetic sources for
 population and ecosystem restoration. Here we use 2455 experimental
 crosses between 12 population pairs of the rare perennial plant Rutidosis
 leptorrhynchoides (Asteraceae) to investigate the multi-generational (F1,
 F2, F3) fitness outcomes of inter-population hybridisation. We detected no
 evidence of outbreeding depression, with inter-population hybrids and
 backcrosses showing either similar fitness or significant heterosis for
 fitness components across the three generations. Variation in heterosis
 among population pairs was best explained by characteristics of the
 foreign source or home population, and was greatest when the source
 population was large, with high genetic diversity and low inbreeding and
 the home population was small and inbred. Our results indicate that the
 primary consideration for maximising progeny fitness following population
 augmentation or restoration is the use of seed from large, genetically
 diverse populations.
description: Data for Pickup et
 al.This file contains the
 raw data for all cross types for the 12 population
 pairsMultiple regression data
 for Pickup et al.This file contains the
 summary data used in the single and multiple
 regressions
DOI: 10.5061/dryad.fc02f
title: Data from: Evolution of body shape in sympatric versus non-sympatric Tropheus populations of Lake Tanganyika

description: Allopatric speciation often yields ecologically equivalent sister species,
 so that their secondary admixis enforces competition. The shores of Lake
 Tanganyika harbor about 120 distinct populations of the cichlid genus
 Tropheus, but only some are sympatric. When alone, Tropheus occupies a
 relatively broad depth zone, but in sympatry, fish segregate by depth. To
 assess the effects of competition, we studied the partial co-occurrence of
 Tropheus moorii ‘Kaiser’ and ‘Kirschfleck’ with Tropheus polli. A previous
 study demonstrated via standardized breeding experiments that some
 observed differences between Tropheus ‘Kaiser’ living alone and in
 sympatry with T. polli have a genetic basis despite large-scale phenotypic
 plasticity. Using geometric morphometrics and neutral genetic markers, we
 now investigated whether sympatric populations differ consistently in body
 shape from populations living alone and if the differences are adaptive.
 We found significant differences in mean shape between non-sympatric and
 sympatric populations, whereas all sympatric populations of both color
 morphs clustered together in shape space. Sympatric populations had a
 relatively smaller head, smaller eyes and a more anterior insertion of the
 pectoral fin than non-sympatric populations. Genetically, however,
 non-sympatric and sympatric ‘Kaiser’ populations clustered together to the
 exclusion of ‘Kirschfleck’. Genetic distances, but not morphological
 distances, were correlated with geographic distances. Within- and
 between-population covariance matrices for T. moorii populations deviated
 from proportionality. It is thus likely that natural selection acts on
 both phenotypic plasticity and heritable traits and that both factors
 contribute to the observed shape differences. The consistency of the
 pattern in five populations suggests ecological character displacement.
description: Data_Kerschbaumer_et_al_2013Cartesian coordinates of 18 landmarks; genotypes for 6 microsatellite markers: UNH130 (Lee and Kocher, 1996), Pzep2, Pzep3 (van Oppen et al., 1997), UME003, UME002 (Parker and Kornfield, 1996) and TmoM27 (Zardoya et al., 1996);723 individuals of two color morphs and two species of the genus Tropheus, collected from eight locations at the eastern coast of Lake Tanganyika