cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.3535/vyl-x52-n17
title: Fallopia convolvulus (L.) Á. Löve

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/x82-rhn-9r4
title: Crepis rubra L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/75w-pzy-kl4
title: Cota triumfetti subsp. triumfetti

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/b6y-gm1-yvt
title: Xeranthemum cylindraceum Sm.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kmy-4zg-btv
title: Odontarrhena muralis (Waldst. & Kit.) Endl.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qwz-7p9-vmr
title: Gymnogynum marginatum (Humb. & Bonpl. ex Willd.) Li Bing Zhang & X. M. Zhou

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/vg0-q1g-8lr
title: Anacyclus pyrethrum (L.) Link

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/y2v-baj-bsx
title: Plantago altissima L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/0r9-q6b-rlk
title: Ranunculus sartorianus Boiss. & Heldr.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/nfc-eet-cn7
title: Plantago lagopus L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/bc9-yl9-1d2
title: Ranunculus brevifolius Ten.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/yap-gym-a34
title: Plantago bellardii All.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/pa6-pzn-lgy
title: Carduus tmoleus Boiss.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kmx-7ft-lpv
title: Plantago coronopus L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/law-zpk-gep
title: Carduus acanthoides subsp. acanthoides

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/42x-gp0-drf
title: Carduus nutans subsp. leiophyllus (Petrovic) Arènes

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/4gh-k7b-mwl
title: Ranunculus thracicus Azn.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qq7-z0l-lel
title: Plantago lanceolata L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/xxz-2s9-lb8
title: Calendula arvensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/1xd-m3k-s29
title: Achillea grandifolia Friv.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/d1n-mr8-kvw
title: Roemeria apula

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/j73-svh-n1p
title: Frangula rupestris (Scop.) Schur

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/6n5-khc-1g1
title: Paliurus spina-christi Mill.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hj4-wm7-3wc
title: Ranunculus illyricus L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/5q2-h36-hjs
title: Papaver × strigosum (Boenn.) Schur

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/kx9-4jb-3y3
title: Carduus macrocephalus Desf.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/rm3-wwx-995
title: Limonium avei (De Not.) Brullo & Erben

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.15468/dl.uqx76k
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oreochromis mossambicus (Peters, 1852)",
 "Country is Bahamas",
 "HasCoordinate is true"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0112429-250525065834625/datasets/export for details.
DOI: 10.3535/bj9-a50-nye
title: Limonium avei (De Not.) Brullo & Erben

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/cez-pqq-q2g
title: Gymnogynum trisulcatum (Aspl.) Li Bing Zhang & X. M. Zhou

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/lcj-771-f15
title: Picris pauciflora Willd.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/qfs-0zp-7gh
title: Plantago afra L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/2rq-nax-xle
title: Ranunculus trichophyllus Chaix

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/b9n-syd-09e
title: Polygonum maritimum L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/dst-ynv-l8y
title: Tripleurospermum tempskyanum (Freyn & Sint.) Hayek

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.3535/hqn-cj9-zn5
title: Ranunculus arvensis L.

description: Digital Specimen for the physical specimen hosted at Botanic Garden and Botanical Museum Berlin.
DOI: 10.5517/ccdc.csd.cc2k4664
title: CCDC 2357525: Experimental Crystal Structure Determination

description: Related Article: Piyush Singh,  Himan Dev Singh,  Pragalbh Shekhar,  Chitvan Jain,  Ping Song,  Mahsa Loloei,  Michael Edwin,  Yan Gao,  Nima Masoumifard,  Ramanathan Vaidhyanathan|2025|Chem.Mater.|37|2496|doi:10.1021/acs.chemmater.4c03231
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.m89ypb
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Prinsepia sinensis (Oliv.) Oliv. ex Bean",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 45 records from 17 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0181360-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pca428
title: Occurrence Download

description: A dataset containing 2069 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Schismus arabicus Nees",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 2069 records from 84 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289080-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mj2c8v
title: Occurrence Download

description: A dataset containing 408 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Antaxius spinibrachius (Fischer, 1853))",
 "HasCoordinate is true"
 ]
}

 The dataset includes 408 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083928-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.megyvt
title: Occurrence Download

description: A dataset containing 6 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Centaurea kotschyana Heuff. ex W.D.J.Koch",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 6 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0293201-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nua87j
title: Occurrence Download

description: A dataset containing 36 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Briza marcowiczii Woronow",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 36 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0415377-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mavxfe
title: Occurrence Download

description: A dataset containing 125 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chaenorhinum litorale (Bernh. ex Willd.) Fritsch",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 125 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0151908-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rembgq
title: Occurrence Download

description: A dataset containing 2103 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opuntia monacantha Haw.)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2103 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083927-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b62kqz
title: Occurrence Download

description: A dataset containing 75123 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Trifolium fragiferum L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 75123 records from 492 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0286861-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pszuan
title: Occurrence Download

description: A dataset containing 74 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hypericum lydium Boiss.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 74 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0300708-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hcqxfa
title: Occurrence Download

description: A dataset containing 49668 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Artemisia absinthium L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 49668 records from 441 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256822-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6tm5sq
title: Occurrence Download

description: A dataset containing 1457 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Labourdonnaisia calophylloides Bojer"
 ]
}

 The dataset includes 1457 records from 37 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083929-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9nd75j
title: Occurrence Download

description: A dataset containing 45 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Isophya rectipennis Brunner von Wattenwyl, 1878)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 45 records from 8 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083931-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ne68ed
title: Occurrence Download

description: A dataset containing 13487 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Araujia sericifera Brot.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 13487 records from 168 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0256634-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ntyk37
title: Occurrence Download

description: A dataset containing 104 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvia amplexicaulis Lam.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 104 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0289593-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.psjksx
title: Occurrence Download

description: A dataset containing 109 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Papaver albiflorum (Elkan) Pacz.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 109 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0297878-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7czwcv
title: Occurrence Download

description: A dataset containing 419 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Spathiphyllum wallisii Regel)"
 ]
}

 The dataset includes 419 records from 86 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083930-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hqjc2k
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opuntia ×demissa Griffiths)",
 "HasCoordinate is true"
 ]
}

 The dataset includes 56 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0083932-240506114902167/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cymguu
title: Occurrence Download

description: A dataset containing 133650 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Asplenium scolopendrium L.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 133650 records from 514 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0288599-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5ha2fs
title: Occurrence Download

description: A dataset containing 3373343 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Egretta thula)",
 "Country is one of (Bermuda, Canada, Greenland, Saint Pierre and Miquelon, United States of America)"
 ]
}

 The dataset includes 3373343 records from 32 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027332-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9d9tmr
title: Occurrence Download

description: A dataset containing 747313 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "BasisOfRecord is one of (Human Observation, Machine Observation, Occurrence evidence, Observation)",
 "TaxonKey is one of (Egretta thula)",
 "Country is one of (Anguilla, Antigua and Barbuda, Argentina, Aruba, Bahamas, Barbados, Belize, Bolivia (Plurinational State of), Bonaire, Sint Eustatius and Saba, Bouvet Island, Brazil, Cayman Islands, Chile, Colombia, Costa Rica, Cuba, Curaçao, Dominica, Dominican Republic, Ecuador, El Salvador, Falkland Islands (Malvinas), French Guiana, Grenada, Guadeloupe, Guatemala, Guyana, Haiti, Honduras, Jamaica, Martinique, Mexico, Montserrat, Nicaragua, Panama, Paraguay, Peru, Puerto Rico, Saint Barthélemy, Saint Kitts and Nevis, Saint Lucia, Saint Martin (French part), Saint Vincent and the Grenadines, Sint Maarten (Dutch part), South Georgia and the South Sandwich Islands, Suriname, Trinidad and Tobago, Turks and Caicos Islands, Uruguay, Venezuela (Bolivarian Republic of), Virgin Islands (British), Virgin Islands (U.S.))"
 ]
}

 The dataset includes 747313 records from 335 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027333-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.vsgvdd
title: Occurrence Download

description: A dataset containing 1252 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tacinga palmadora"
 ]
}

 The dataset includes 1252 records from 80 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027368-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.16311518
title: Methanobrevibacter smithii associates with colorectal cancer through trophic control of the cancer bacteriome

description: The human gut is colonized by trillions of microbes that influence the health of their human host. Whereas many bacterial species have now been linked to a variety of different diseases, the involvement of Archaea in human disease remains elusive. Here we searched for gut archaeal signatures of disease by screening 19 cross-sectional clinical studies comprising more than 1,800 individuals. We found that associations between Archaea and medical disorders are common but highly variable and are dominated by a significant increase of Methanobrevibacter smithii in colorectal cancer (CRC) patients. Metabolic modelling and in vitro co-culture identified distinct mutualistic interactions of M. smithii with CRC-causing bacteria such as Fusobacterium nucleatum, including metabolic enhancement. Metabolomics further revealed archaeal-derived compounds with tumor-modulating properties. This provides the first mechanistic link between human gut archaeome and CRC and highlights its role in modulating health in humans through trophic control of the resident bacteriome.
DOI: 10.5281/zenodo.16311519
title: Methanobrevibacter smithii associates with colorectal cancer through trophic control of the cancer bacteriome

description: The human gut is colonized by trillions of microbes that influence the health of their human host. Whereas many bacterial species have now been linked to a variety of different diseases, the involvement of Archaea in human disease remains elusive. Here we searched for gut archaeal signatures of disease by screening 19 cross-sectional clinical studies comprising more than 1,800 individuals. We found that associations between Archaea and medical disorders are common but highly variable and are dominated by a significant increase of Methanobrevibacter smithii in colorectal cancer (CRC) patients. Metabolic modelling and in vitro co-culture identified distinct mutualistic interactions of M. smithii with CRC-causing bacteria such as Fusobacterium nucleatum, including metabolic enhancement. Metabolomics further revealed archaeal-derived compounds with tumor-modulating properties. This provides the first mechanistic link between human gut archaeome and CRC and highlights its role in modulating health in humans through trophic control of the resident bacteriome.
DOI: 10.15468/dl.92haue
title: Occurrence Download

description: A dataset containing 356 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Salvelinus fontinalis",
 "Country is Denmark",
 "HasCoordinate is true"
 ]
}

 The dataset includes 356 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027371-250717081556266/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5524/100373
title: Supporting data for "SOAPnuke: A MapReduce Acceleration supported Software for integrated Quality Control and Preprocessing of High-Throughput Sequencing Data"

description: Quality Control (QC) and preprocessing are essential steps for sequencing data analysis to ensure the accuracy of results. However, existing tools cannot provide a satisfying solution with integrated comprehensive functions, proper architectures and highly-scalable acceleration. In this article, we demonstrate SOAPnuke as a tool with abundant functions for a QC-Preprocess-QC workflow and MapReduce acceleration framework. Four modules with different preprocessing functions are designed for processing datasets from genomic, small RNA (sRNA), Digital Gene Expression (DGE) and metagenomic experiments respectively. As a workflow-like tool, SOAPnuke centralizes processing functions in one executable and predefine their order to avoid the necessity of reformatting different files when switching tools. Furthermore, the MapReduce framework enables large scalability to distribute all the processing works to an entire compute cluster. We conducted a benchmarking where SOAPnuke and other tools are used to preprocess ~30x NA12878 dataset published by GIAB. The standalone operation of SOAPnuke struck a balance between resource occupancy and performance. When accelerated on 16 working nodes with MapReduce, SOAPnuke achieved ~5.7 times of the fastest speed of other tools.