cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11367800.v1
title: Data from: Differential monovalent anion selectivity in narrow diameter carbon nanotube porins. http://dx.doi.org/10.1021/acsnano.0c02423

description: Data from: <b><br></b><b>Differential monovalent anion selectivity in narrow diameter carbon nanotube porins</b><b><br></b> <b>Figure 1. Anion permeability assay.</b> (a) Schematics of the lucigenin-based assay for halide anions transport. (b,c) Representative stopped-flow kinetic traces recorded for control LUVs (b) and CNTP-LUVs (c) after exposure to Br− gradient (as indicated on the legend) at pH 7.5. The average density of CNTP channels in CNTP-LUVs was ca. 5 per vesicle. <br> <b>Figure 2. Anion transport in 0.8 nm CNTPs.</b> Plots of anion flux as a function of anion concentration gradient for CNTP-LUVs measured at pH 7.5 and pH 3.0 for (a) Cl− ions; (b) Br− ions; (c) I− ions; and (d) SCN− ions. Error bars were obtained from at least three separate experiments. The corresponding stopped- flow traces (Fig. S3 for pH 7.5) and (Fig. S4 for pH 3.0) and anion flux in control LUVs (Fig. S5) are shown in the Supplementary Materials.<br> <b>Figure 3. Anion permeability of CNTPs.</b> (a) Anion permeabilities measured at two pH values. (b) Measured anion permeabilities plotted as a function of the first solvation shell hydration energies calculated from the first principle simulations. <br><br> <br>
DOI: 10.6084/m9.figshare.11367458
title: N_vs_HPV=CIN_vs_Ca-ALL_Samples.data.csv

description: <b>The intelligent-Knife (I-Knife) and its intraoperative diagnostic advantage for the treatment of cervical disease.</b><br>
DOI: 10.6084/m9.figshare.11367392
title: Figshare.xlsx

description: Raw data<br><br>
DOI: 10.25380/iastate.11366192
title: Houston Forensic Science Center Ruger LCP LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are three test kits (G1, G2, G3), each containing sets of known and unknown bullets. The kits are based on a set of ten consecutively rifled Luger LCP barrels, labeled A - J, with an additional three nonconsecutively rifled barrels (R1, R2, R3).<br> In each test kit, there are three test fires each from five consecutively rifled barrels, as well as ten questioned bullets whose source is unknown. This set is an open set, so the questioned bullets may have been fired from weapons not included in the test set, that is, from R1-R3 instead of A-J. Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. In total, each test kit consists of 150 scans, for a total of 450 scans for all three test kits. <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. The total dataset size is 4.5 GB. <br> <br> Generally, files are grouped as follows: SetGG/BarrelXX/BulletY/LandZ.x3p. Unknown bullets are stored in an Unknown folder within each set and are identified by U00, where 00 can be any two-digit number.<br>Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by the Roy J. Carver Microscopy Lab at Iowa State.
DOI: 10.6084/m9.figshare.11366201
title: Data: Intensive farming drives long-term shifts in avian community composition

description: Two community datasets from Hendershot et al. 2020 Nature.<br>DOI: https://doi.org/10.1038/s41586-020-2090-6<br>1. ChaoRich_MeanAnnualCounts.csvThis file contains Chao estimated species richness at each transect in each year.<br>Variable DescriptionTransect: Sampling location. N = 44. Four transects were dropped from analyses due to extensive changes to land management, and are not included here..<b>Year: </b>Sampling year<b>Chao: </b>Chao estimated species richness derived from 6 within-year transect counts.<b>Mean_Annual_Counts: </b>Average of dry and wet season counts.<b>Region: </b>Study Region.<b>Land_Use: </b>Land cover classification<br>2. BrayCurtis.csvThis file contains temporal Bray-Curtis Similarities in community composition within each transect from 2000-2017.The first year of the study (2000) is used as the baseline.Bray Curtis similarity was calculated between 2000 and each subsequent year to measure directional change in community composition.<br><b>Variable Description</b>Transect: Sampling location. N = 44. Four transects were dropped from analyses due to extensive changes to land management, and are not included here..<b>Year_Pair: </b>Sampling year comparisons<b>BC_Similarity: </b>Bray-Curtis similarity in community composition between sampling years.<b>Region: </b>Study Region.<b>Land_Use: </b>Land cover classification<br>
DOI: 10.25380/iastate.11366192.v1
title: Houston Forensic Science Center Ruger LCP LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are three test kits (G1, G2, G3), each containing sets of known and unknown bullets. The kits are based on a set of ten consecutively rifled Luger LCP barrels, labeled A - J, with an additional three nonconsecutively rifled barrels (R1, R2, R3).<br> In each test kit, there are three test fires each from five consecutively rifled barrels, as well as ten questioned bullets whose source is unknown. This set is an open set, so the questioned bullets may have been fired from weapons not included in the test set, that is, from R1-R3 instead of A-J. Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. In total, each test kit consists of 150 scans, for a total of 450 scans for all three test kits. <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. The total dataset size is 4.5 GB. <br> <br> Generally, files are grouped as follows: SetGG/BarrelXX/BulletY/LandZ.x3p. Unknown bullets are stored in an Unknown folder within each set and are identified by U00, where 00 can be any two-digit number.<br>Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by the Roy J. Carver Microscopy Lab at Iowa State.
DOI: 10.6084/m9.figshare.11366201.v1
title: Data: Intensive farming drives long-term shifts in avian community composition

description: Two community datasets from Hendershot et al. 2020 Nature.<br>DOI: https://doi.org/10.1038/s41586-020-2090-6<br>1. ChaoRich_MeanAnnualCounts.csvThis file contains Chao estimated species richness at each transect in each year.<br>Variable DescriptionTransect: Sampling location. N = 44. Four transects were dropped from analyses due to extensive changes to land management, and are not included here..<b>Year: </b>Sampling year<b>Chao: </b>Chao estimated species richness derived from 6 within-year transect counts.<b>Mean_Annual_Counts: </b>Average of dry and wet season counts.<b>Region: </b>Study Region.<b>Land_Use: </b>Land cover classification<br>2. BrayCurtis.csvThis file contains temporal Bray-Curtis Similarities in community composition within each transect from 2000-2017.The first year of the study (2000) is used as the baseline.Bray Curtis similarity was calculated between 2000 and each subsequent year to measure directional change in community composition.<br><b>Variable Description</b>Transect: Sampling location. N = 44. Four transects were dropped from analyses due to extensive changes to land management, and are not included here..<b>Year_Pair: </b>Sampling year comparisons<b>BC_Similarity: </b>Bray-Curtis similarity in community composition between sampling years.<b>Region: </b>Study Region.<b>Land_Use: </b>Land cover classification<br>
DOI: 10.6084/m9.figshare.11366177
title: Datasheet 3: Table percentiles from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used to evaluate the differences between percentiles.
DOI: 10.6084/m9.figshare.11366183
title: Datasheet 1: Table oxidative_stress from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used for the analysis of oxidative stress.
DOI: 10.6084/m9.figshare.11366177.v1
title: Datasheet 3: Table percentiles from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used to evaluate the differences between percentiles.
DOI: 10.6084/m9.figshare.11366171
title: Datasheet 2: Table telomeres from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used for the analysis of telomeres.
DOI: 10.6084/m9.figshare.11366183.v1
title: Datasheet 1: Table oxidative_stress from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used for the analysis of oxidative stress.
DOI: 10.6084/m9.figshare.11366171.v1
title: Datasheet 2: Table telomeres from Antioxidant supplementation slows telomere shortening in free-living white stork chicks

description: Data used for the analysis of telomeres.
DOI: 10.25380/iastate.11366153
title: Phoenix PD Ruger P-95 LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are 8 barrels (identified with an alphanumeric code, such as A9, C8, etc.) used to fire the known bullets in the study, with three bullets known to be fired from each barrel (Bullet1, Bullet2, Bullet3). Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. <br> In addition to the 24 bullets with known provenance, there are 8 "unknown" bullets which can be matched to the 8 barrels, for a total of 32 bullets. Each bullet has 6 land engraved areas, for a total of 192 scans. Unknown bullets are identified with a letter.<br><br>This study is an open study, that is, not all of the unknown bullets may match to the known barrels in the set. Some of the unknown bullets may have been fired from other types of Ruger handguns.<br> <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. The total dataset size is about 3.4 GB. <br> <br> Files are grouped as follows: BarrelXX/BulletY/ with the land number identified as part of the filename.<br> <br> Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by Bill Henderson at Sensofar. Tylor Klep of the Phoenix Police Department designed the study and collected the bullets.<br>
DOI: 10.25380/iastate.11366153.v1
title: Phoenix PD Ruger P-95 LEA scans

description: <b>Email csafe@iastate.edu to obtain the data.</b><br><br>The data consist of scans of bullet land engraved areas in x3p format. The study is structured so that there are 8 barrels (identified with an alphanumeric code, such as A9, C8, etc.) used to fire the known bullets in the study, with three bullets known to be fired from each barrel (Bullet1, Bullet2, Bullet3). Each bullet contains 6 land engraved areas, which are identified as Land 1-Land 6. <br> In addition to the 24 bullets with known provenance, there are 8 "unknown" bullets which can be matched to the 8 barrels, for a total of 32 bullets. Each bullet has 6 land engraved areas, for a total of 192 scans. Unknown bullets are identified with a letter.<br><br>This study is an open study, that is, not all of the unknown bullets may match to the known barrels in the set. Some of the unknown bullets may have been fired from other types of Ruger handguns.<br> <br> The x3p format provides for the inclusion of relevant metadata within the x3p file, including the machine used to scan the bullets, the operator, and the resolution of the scan. The total dataset size is about 3.4 GB. <br> <br> Files are grouped as follows: BarrelXX/BulletY/ with the land number identified as part of the filename.<br> <br> Information on x3p format: https://www.iso.org/standard/62310.html <br> <br> We have produced two R packages meant to work with this data: <br> - x3ptools (on CRAN, with dev versions on github at heike/x3ptools). x3ptools contains utilities for reading, writing, annotating, rendering, and exporting x3p data to other formats. <br> - bulletxtrctr (dev version on github at heike/bulletxtrctr). bulletxtrctr contains utilities for extracting useful data from bullet LEA scans as well as a matching algorithm used to match unknown bullets to the barrels they were fired from. <br> <br> Scans were created by Bill Henderson at Sensofar. Tylor Klep of the Phoenix Police Department designed the study and collected the bullets.<br>
DOI: 10.6084/m9.figshare.11366120
title: Data for Neural and behavioral evidence for frequency-selective context effects in rhythm processing in humans

description: Experimental stimuli and data for "Neural and behavioral evidence for frequency-selective context effects in rhythm processing in humans". <br>The zip file "stimuli" contains audio files of rhythmic sequences used in the EEG and tapping session, as well as output of the cochlear model. <br>There is an "EEG" and "tapping" zip file separately for each participant, containing data from the corresponding sessions. <br>The Excel sheet "participant_info.xlsx" contains information about each participant and analysis of their EEG dataset. <br>Refer to README files for further information.
DOI: 10.6084/m9.figshare.11366069
title: Supplementary Tables from <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> gene polymorphisms increase atherothrombosis susceptibility in middle-aged Mexicans

description: Atherothrombosis is the cornerstone of cardiovascular diseases and the primary cause of death worldwide. Genetic contribution to disturbances in lipid metabolism, coagulation, inflammation and oxidative stress increase the susceptibility to its development and progression. Given its multifactorial nature, the multiloci studies have been proposed as potential predictors of susceptibility. A cross-sectional study was conducted to explore the contribution of nine genes involved in oxidative stress, inflammatory and thrombotic processes in 204 subjects with atherothrombosis matched by age and gender with a healthy group (<i>n</i> = 204). To evaluate the possibility of spurious associations owing to the Mexican population genetic heterogeneity as well as its ancestral origins, 300 unrelated mestizo individuals and 329 Native Americans were also included. <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> gene polymorphisms, as well as their multiallelic combinations, were twice to four times more frequent in those individuals with clinical manifestations of atherothrombosis than in the healthy group. Once adjusting for population stratification was done, these differences remained. Our results add further evidence on the contribution of <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> polymorphisms to atherothrombosis development in the middle-aged group, emphasizing the multiethnic studies in search of gene risk polymorphisms.
DOI: 10.6084/m9.figshare.11366069.v1
title: Supplementary Tables from <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> gene polymorphisms increase atherothrombosis susceptibility in middle-aged Mexicans

description: Atherothrombosis is the cornerstone of cardiovascular diseases and the primary cause of death worldwide. Genetic contribution to disturbances in lipid metabolism, coagulation, inflammation and oxidative stress increase the susceptibility to its development and progression. Given its multifactorial nature, the multiloci studies have been proposed as potential predictors of susceptibility. A cross-sectional study was conducted to explore the contribution of nine genes involved in oxidative stress, inflammatory and thrombotic processes in 204 subjects with atherothrombosis matched by age and gender with a healthy group (<i>n</i> = 204). To evaluate the possibility of spurious associations owing to the Mexican population genetic heterogeneity as well as its ancestral origins, 300 unrelated mestizo individuals and 329 Native Americans were also included. <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> gene polymorphisms, as well as their multiallelic combinations, were twice to four times more frequent in those individuals with clinical manifestations of atherothrombosis than in the healthy group. Once adjusting for population stratification was done, these differences remained. Our results add further evidence on the contribution of <i>ALOX5</i>, <i>LPA</i>, <i>MMP9</i> and <i>TPO</i> polymorphisms to atherothrombosis development in the middle-aged group, emphasizing the multiethnic studies in search of gene risk polymorphisms.
DOI: 10.6084/m9.figshare.11366027
title: LIFETIME RISK OF AUTOSOMAL RECESSIVE MITOCHONDRIAL DISORDERS CALCULATED FROM GENETIC DATABASES

description: <b>Background </b>Mitochondrial disorders are a group of rare diseases, caused by nuclear or mitochondrial DNA mutations. Their marked clinical and genetic heterogeneity as well as referral and ascertainment biases render phenotype-based prevalence estimations difficult. Here we calculated the lifetime risk of all known autosomal recessive mitochondrial disorders on basis of genetic data. <b>Methods</b> We queried the publicly available Genome Aggregation Database (gnomAD) and our in-house exome database to assess the allele frequency of disease-causing variants in genes associated with autosomal recessive mitochondrial disorders. Based on this, we estimated the lifetime risk of 249 autosomal recessive mitochondrial disorders. Three of these disorders and phenylketonuria (PKU) served as a proof of concept since calculations could be aligned with known birth prevalence data from newborn screening reports. <b>Findings </b>The estimated lifetime risks are very close to newborn screening data (where available), supporting the validity of the approach. For example, calculated lifetime risk of PKU (16·0/100,000) correlates well with known birth prevalence data (18·7/100,000). The combined estimated lifetime risk of 249 investigated mitochondrial disorders is 31·8 (20·9-50·6)/100,000 in our in-house database, 48·4 (40·3-58·5)/100,000 in the European gnomAD dataset, and 31·1 (26·7-36·3)/100,000 in the global gnomAD dataset. The disorders with the highest lifetime risk (&gt; 3 per 100,000) were, in all datasets, those caused by mutations in the <i>SPG7</i>, <i>ACADM</i>, <i>POLG</i> and <i>SLC22A5</i> genes. <b>Interpretation</b> We provide a population-genetic estimation on the lifetime risk of an entire class of monogenic disorders. Our findings reveal the substantial cumulative prevalence of autosomal recessive mitochondrial disorders, far above previous estimates. These data will be very important for assigning diagnostic a priori probabilities, and for resource allocation in therapy development, public health management and biomedical research.
DOI: 10.6084/m9.figshare.11366009
title: A new genus of Staphylinina and a review of major lineages (Staphylinidae: Staphylininae: Staphylinini)

description: Despite their familiarity to most naturalists, the large rove beetles of the subtribe Staphylinina are poorly understood systematically and have never been the subject of a focused phylogenetic analysis. Within a total evidence analytical framework, an unusual Staphylinina from China was demonstrated to be the sister group of <i>Ontholestes</i> and was described as <i>Lesonthotes vulneratus</i> Smetana and Brunke, gen. et sp. nov. Based on these results, <i>Ontholestes</i> was morphologically redefined and the Cingulatus group of species was established. The Neotropical genus <i>Leistotrophus</i> was resolved as a member of <i>Ontholestes</i>, within the latter clade but synonymy was avoided until molecular data are available for the former. <i>Ontholestes lowi</i> Rougemont, 2016 syn. nov. is proposed as a junior synonym of <i>Ontholestes borneensis</i> Cameron, 1942. We also confirmed the existence of and morphologically defined three major lineages within Staphylinina, of which two were previously based on molecular data only. This study builds on previous work by Smetana and Davies (2000) and lays the framework for more extensive analysis of the subtribe. Our results emphasize the continued value of morphological characters in a total evidence framework for resolving the systematics of charismatic but poorly explored groups. www.zoobank.org/urn:lsid:zoobank.org:pub:776F033D-4556-483C-8725-707E1B02C040
DOI: 10.6084/m9.figshare.11366015
title: Domingo-Rodriguez et al., Source Data.xlsx

description: <b>The data belongs to the paper of Domingo et al. 2020 entitled: </b>"<i>A specific prelimbic-nucleus accumbens pathway controls resilience versus vulnerability to food addiction</i>" published in <b>Nature Communications</b>.
DOI: 10.6084/m9.figshare.11366006
title: A molecular phylogeny of carcinoecium-forming <i>Epizoanthus</i> (Hexacorallia: Zoantharia) from the Western Pacific Ocean with descriptions of three new species

description: Many cnidarians have been reported in association with hermit crabs from shallow waters to the deep sea. Some of these actiniarians and zoantharians produce a carcinoecium, a chitin-like pseudo-shell. Many studies have been conducted on hermit crab–actiniarian symbioses, while hermit crab–zoantharian symbioses have received less attention due to the difficulty of specimen collection as they are exclusively found in the deep sea. In this study, 11 carcinoecium-forming specimens associated with hermit crabs of several genera were collected from the western Pacific Ocean. We formally described the collected specimens as <i>Epizoanthus xenomorphoideus</i> sp. nov., <i>E. australis</i> sp. nov., and <i>E. gorgonus</i> sp. nov. based on results of molecular phylogenetic analyses (COI, mt 12S-rDNA, mt 16S-rDNA, 18S-rDNA, ITS-rDNA) and morphological observations. Our phylogenetic results showed that there are two different subclades within a carcinoecium clade, and these subclades have different external morphologies. Further studies with more taxon sampling will enable a more comprehensive evaluation of the evolution and phylogenetic relationships of carcinoecium-forming zoantharian species.