cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5517/ccdc.csd.cc2kvt08
title: CCDC 2379250: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt19
title: CCDC 2379251: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt2b
title: CCDC 2379252: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt3c
title: CCDC 2379253: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt4d
title: CCDC 2379254: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt5f
title: CCDC 2379255: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2kvt6g
title: CCDC 2379256: Experimental Crystal Structure Determination

description: Related Article: İ.G. Mamedov, V.N. Khrustalev, M. Akkurt, F.S. Kerimli, A. Bhattarai, A.N. Khalilov, F.N. Naghiyev|2024|Acta Crystallogr.,Sect.E:Cryst.Commun.|80|495|doi:10.1107/S2056989024002962
description: Related Article: F. Tambornino, S. Ringelband, S.F. Parker, C.M. Howard, D. Fortes|2024|Acta Crystallogr.,Sect.B:Struct.Sci.,Cryst.Eng. and Mat.|80|495|doi:10.1107/S2052520624007583
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.t42hh5
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps sylvestris FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((25.5395 -23.2724,25.1306 -24.0715,25.5395 -24.0715,25.5395 -23.2724))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031933-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ftrfax
title: Occurrence Download

description: A dataset containing 117 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Lepechinia salviifolia (Kunth) Epling"
 ]
}

 The dataset includes 117 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031932-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15605396
title: Data Folder

description: All input and results data
DOI: 10.5281/zenodo.15605395
title: Data Folder

description: All input and results data
DOI: 10.5281/zenodo.15627840
title: Data Folder

description: All input and results data
DOI: 10.15468/dl.qxe6jy
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps sylvestris FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((20.2855 -34.7533,20.509 -34.5676,20.509 -32.9007,17.7723 -32.9007,17.8156 -33.0786,18.3471 -33.7176,18.3748 -33.8287,18.2181 -34.0492,18.3197 -34.3408,18.4452 -34.429,18.5435 -34.4213,18.5872 -34.3667,18.5363 -34.167,18.7345 -34.1508,18.7216 -34.3637,18.7808 -34.4521,19.0289 -34.4206,19.0831 -34.4835,19.2655 -34.5017,19.2032 -34.6157,19.2394 -34.6926,19.375 -34.6963,19.6091 -34.8524,19.8251 -34.8396,19.9798 -34.9064,20.1081 -34.8731,20.1517 -34.7847,20.2855 -34.7533))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031934-250525065834625/datasets/export for details.
DOI: 10.6084/m9.figshare.27139340
title: Alginate oligosaccharide-driven resistance in <i>Debaryomyces hansenii</i> Y3: a dual omics perspective

description: Blue mould disease is one of the most common postharvest apple diseases caused by <i>Penicillium expansum</i>. Some antagonistic yeasts have been used through laboratory experimentation to control the postharvest diseases of apples, but their control effectiveness needs further improvement. Induction of antagonistic yeasts by elicitors is an effective method that improves the biocontrol effectiveness of the yeast. Our previous study demonstrated that alginate oligosaccharide (AOS) significantly enhanced the biocontrol effectiveness of <i>Debaryomyces hansenii</i> in combating postharvest diseases in apples. Furthermore, the yeast's potential physiological biocontrol mechanisms have been previously documented. However, the molecular mechanisms associated with this were unclear. This study investigated the possible molecular mechanisms behind the enhanced efficacy of biological control by <i>D. hansenii</i> Y3 when cultured with AOS, based on transcriptome and proteome analysis. There were 408 differential genes and 114 differential proteins induced by AOS, which were mainly involved in enhancing the growth, reproduction, metabolism, stress resistance and energy synthesis, and more. These improvements collectively contribute to the heightened antagonistic efficacy of <i>D. hansenii</i> Y3. Our findings offer a valuable reference for future investigations into the utilisation of antagonistic yeasts for preventing and managing postharvest diseases in fruits and vegetables.
DOI: 10.6084/m9.figshare.27139340.v1
title: Alginate oligosaccharide-driven resistance in <i>Debaryomyces hansenii</i> Y3: a dual omics perspective

description: Blue mould disease is one of the most common postharvest apple diseases caused by <i>Penicillium expansum</i>. Some antagonistic yeasts have been used through laboratory experimentation to control the postharvest diseases of apples, but their control effectiveness needs further improvement. Induction of antagonistic yeasts by elicitors is an effective method that improves the biocontrol effectiveness of the yeast. Our previous study demonstrated that alginate oligosaccharide (AOS) significantly enhanced the biocontrol effectiveness of <i>Debaryomyces hansenii</i> in combating postharvest diseases in apples. Furthermore, the yeast's potential physiological biocontrol mechanisms have been previously documented. However, the molecular mechanisms associated with this were unclear. This study investigated the possible molecular mechanisms behind the enhanced efficacy of biological control by <i>D. hansenii</i> Y3 when cultured with AOS, based on transcriptome and proteome analysis. There were 408 differential genes and 114 differential proteins induced by AOS, which were mainly involved in enhancing the growth, reproduction, metabolism, stress resistance and energy synthesis, and more. These improvements collectively contribute to the heightened antagonistic efficacy of <i>D. hansenii</i> Y3. Our findings offer a valuable reference for future investigations into the utilisation of antagonistic yeasts for preventing and managing postharvest diseases in fruits and vegetables.
DOI: 10.6084/m9.figshare.27850205
title: The transcriptomic and proteomic changes of <i>Hannaella sinensis</i> in response to patulin stress

description: Patulin (PAT) is a significant mycotoxin contaminant of fruit and fruit products. <i>Hannaella sinensis</i> is an antagonistic yeast that controls postharvest diseases and mycotoxins in crops and is potentially valuable for ensuring food safety. Our previous studies have shown that <i>H. sinensis</i> can effectively degrade PAT. The possible physiological mechanisms of yeast have been previously reported, however, the molecular mechanism of PAT degradation by the yeast needs to be explored in depth. Therefore, our current work aimed to use transcriptomic and proteomic techniques to unravel the molecular mechanisms by which PAT degradation occurs in <i>H. sinensis</i>. The results showed that transcriptomic studies of <i>H. sinensis</i> in PAT culture identified 951 differentially expressed genes, of which 194 were up-regulated, and 757 were down-regulated. These genes could be used to induce the ability of <i>H. sinensis</i> to resist stress, promote the synthesis of drug-resistant substances and maintain the integrity of cell membranes. Besides, proteomic analyses revealed that PAT treatment enhances multiple aspects of <i>H. sinensis</i>, including protein processing, cell growth, reproduction, catalase, cell wall synthesis, and more. Our study helps to understand the possible mechanisms of PAT degradation and PAT stress response at the transcription and protein expression levels in <i>H. sinensis.</i>
DOI: 10.6084/m9.figshare.27850205.v1
title: The transcriptomic and proteomic changes of <i>Hannaella sinensis</i> in response to patulin stress

description: Patulin (PAT) is a significant mycotoxin contaminant of fruit and fruit products. <i>Hannaella sinensis</i> is an antagonistic yeast that controls postharvest diseases and mycotoxins in crops and is potentially valuable for ensuring food safety. Our previous studies have shown that <i>H. sinensis</i> can effectively degrade PAT. The possible physiological mechanisms of yeast have been previously reported, however, the molecular mechanism of PAT degradation by the yeast needs to be explored in depth. Therefore, our current work aimed to use transcriptomic and proteomic techniques to unravel the molecular mechanisms by which PAT degradation occurs in <i>H. sinensis</i>. The results showed that transcriptomic studies of <i>H. sinensis</i> in PAT culture identified 951 differentially expressed genes, of which 194 were up-regulated, and 757 were down-regulated. These genes could be used to induce the ability of <i>H. sinensis</i> to resist stress, promote the synthesis of drug-resistant substances and maintain the integrity of cell membranes. Besides, proteomic analyses revealed that PAT treatment enhances multiple aspects of <i>H. sinensis</i>, including protein processing, cell growth, reproduction, catalase, cell wall synthesis, and more. Our study helps to understand the possible mechanisms of PAT degradation and PAT stress response at the transcription and protein expression levels in <i>H. sinensis.</i>
DOI: 10.6084/m9.figshare.27176245
title: Isolation and functional determination of inward-rectifier K<sup>+</sup> channel PbrAKT1 in pear

description: Potassium (K<sup>+</sup>) is essential to plant growth and development. The absorption and transport of K<sup>+</sup> by plant roots occurs mainly through K<sup>+</sup> channels or transporters. In this study, an AKT1-type channel named PbrAKT1 was successfully cloned and characterised by a series of detailed procedures, including protein sequence alignment, expression and subcellular localisation analysis, as well as functional verification by heterologous expression function validation in yeast mutant <i>R5421</i>, <i>Arabidopsis akt1</i> mutant, and <i>Xenopus</i> oocytes. The results showed that <i>PbrAKT1</i> is preferentially expressed in pear roots and exhibits plasma membrane localisation, but its expression is unaffected by low K<sup>+</sup> treatment. PbrAKT1 exhibits the function of an inwardly-rectifying K<sup>+</sup> channel, and its activity is autonomously regulated when expressed in <i>Xenopus</i> oocytes. In addition, a series of heterologous expression experiments confirmed that PbrAKT1 plays an indispensable role in the processes of K<sup>+</sup> transport, as well as alleviating the low-K<sup>+</sup> -sensitive phenotype of yeast mutant <i>R5421</i> and <i>Arabidopsis akt1</i> mutant. In summary, PbrAKT1 plays an indispensable role in the processes of K<sup>+</sup> transport and provide new information on the molecular mechanism of K<sup>+</sup> absorption in pear roots.
DOI: 10.6084/m9.figshare.27176245.v1
title: Isolation and functional determination of inward-rectifier K<sup>+</sup> channel PbrAKT1 in pear

description: Potassium (K<sup>+</sup>) is essential to plant growth and development. The absorption and transport of K<sup>+</sup> by plant roots occurs mainly through K<sup>+</sup> channels or transporters. In this study, an AKT1-type channel named PbrAKT1 was successfully cloned and characterised by a series of detailed procedures, including protein sequence alignment, expression and subcellular localisation analysis, as well as functional verification by heterologous expression function validation in yeast mutant <i>R5421</i>, <i>Arabidopsis akt1</i> mutant, and <i>Xenopus</i> oocytes. The results showed that <i>PbrAKT1</i> is preferentially expressed in pear roots and exhibits plasma membrane localisation, but its expression is unaffected by low K<sup>+</sup> treatment. PbrAKT1 exhibits the function of an inwardly-rectifying K<sup>+</sup> channel, and its activity is autonomously regulated when expressed in <i>Xenopus</i> oocytes. In addition, a series of heterologous expression experiments confirmed that PbrAKT1 plays an indispensable role in the processes of K<sup>+</sup> transport, as well as alleviating the low-K<sup>+</sup> -sensitive phenotype of yeast mutant <i>R5421</i> and <i>Arabidopsis akt1</i> mutant. In summary, PbrAKT1 plays an indispensable role in the processes of K<sup>+</sup> transport and provide new information on the molecular mechanism of K<sup>+</sup> absorption in pear roots.
DOI: 10.6084/m9.figshare.26112677
title: Shelf-life enhancement of <i>Gerbera jamesonii</i> flowers by the green synthesised ZnO nanoflowers

description: This study has been aimed to synthesise the self-assembled, flower-shaped zinc oxide nanoparticles (ZnO NFs) by using a green synthesis method using the aqueous extract from the peels of <i>Citrus reticulata</i>. Both HR-TEM and Fe-SEM analyses have confirmed the flower-like morphology for the synthesised nanoparticles. The observed zeta potential value of −48.0 mV further indicated its highly stable structure. The X-ray diffractogram of the ZnO NFs showed the characteristic diffraction peaks for the crystalline ZnO without any impurity peak, indicating the complete reduction into nanoparticles and thereby, the formation of pure crystalline ZnO NFs. The antibacterial activity of ZnO NFs was then studied using the standard well diffusion method and demonstrated significant bactericidal effects against <i>Staphylococcus aureus</i> and <i>Escherichia coli</i>, with a minimum inhibitory concentration (MIC) of 0.048 mg mL<sup>−1</sup>. Additionally, the ZnO NFs were evaluated for their potential to enhance the shelf life of <i>Gerbera jamesonii</i> flowers when treated with different concentrations in a chitosan-based solution. The ZnO NFs supplemented solution here was found to preserve the freshness of the cut flowers for up to 9.3 ± 0.3 days compared to the 3-day shelf life of the control group. These findings suggest ZnO NFs to have significant antibacterial properties and can effectively extend the shelf life of cut flowers.
DOI: 10.6084/m9.figshare.26112677.v1
title: Shelf-life enhancement of <i>Gerbera jamesonii</i> flowers by the green synthesised ZnO nanoflowers

description: This study has been aimed to synthesise the self-assembled, flower-shaped zinc oxide nanoparticles (ZnO NFs) by using a green synthesis method using the aqueous extract from the peels of <i>Citrus reticulata</i>. Both HR-TEM and Fe-SEM analyses have confirmed the flower-like morphology for the synthesised nanoparticles. The observed zeta potential value of −48.0 mV further indicated its highly stable structure. The X-ray diffractogram of the ZnO NFs showed the characteristic diffraction peaks for the crystalline ZnO without any impurity peak, indicating the complete reduction into nanoparticles and thereby, the formation of pure crystalline ZnO NFs. The antibacterial activity of ZnO NFs was then studied using the standard well diffusion method and demonstrated significant bactericidal effects against <i>Staphylococcus aureus</i> and <i>Escherichia coli</i>, with a minimum inhibitory concentration (MIC) of 0.048 mg mL<sup>−1</sup>. Additionally, the ZnO NFs were evaluated for their potential to enhance the shelf life of <i>Gerbera jamesonii</i> flowers when treated with different concentrations in a chitosan-based solution. The ZnO NFs supplemented solution here was found to preserve the freshness of the cut flowers for up to 9.3 ± 0.3 days compared to the 3-day shelf life of the control group. These findings suggest ZnO NFs to have significant antibacterial properties and can effectively extend the shelf life of cut flowers.
DOI: 10.15468/dl.hskqvh
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps sylvestris FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.628 -23.023,35.6007 -22.9702,35.6007 -23.165,35.628 -23.023))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031935-250525065834625/datasets/export for details.
DOI: 10.15468/dl.73xqnp
title: Occurrence Download

description: A dataset containing 135363 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "GadmGid is COL.17_2",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 135363 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031924-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.5y8dsm
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Breviceps sylvestris FitzSimons, 1930",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031936-250525065834625/datasets/export for details.
DOI: 10.15468/dl.ahef4k
title: Occurrence Download

description: A dataset listing the 4068219 species recorded in GBIF matching the query:
{ }

 The dataset's 4068219 records were derived from 73681 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0031928-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.