cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.22002/zzvbh-42810
title: Hyphomonas session16 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-06</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 150.0 eV/Å²,  defocus: -10.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in 2216 media, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-18/rawdata/</p>09jun06a_bx823a_054.mrc,  Tilt Series (Pixel Size 0.774 nm), 520.1 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-18/rawdata/09jun06a_bx823a_054.mrc"
        > <i class="download icon"></i> Download </a></p>

        09jun06a_bx823a_054_full.rec,  Reconstruction (Pixel Size 1.548 nm), 419.4 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-06-18/3dimage_7892/09jun06a_bx823a_054_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/3qfmn-b1t29
title: Pdb 121509 MP35

description: Prosthecobacter debontii, 09dec18a_MP35_II_Pdb_095,
description: <strong>Tilt Series Date:</strong> 2009-12-18</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter debontii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
  mpa2009-12-18-70_slicer7861.jpg: REZ  .  Ribosome exclusion zone .  Prosthecobacer debontii
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-70/rawdata/</p>09dec18a_MP35_II_Pdb_095.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        09dec18a_MP35_II_Pdb_095_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2009-12-18-70/3dimage_14375/09dec18a_MP35_II_Pdb_095_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/7epcc-4w051
title: Hyphomonas session8 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-06</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 5nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-22/rawdata/</p>09mar06a_20d_022.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-22/rawdata/09mar06a_20d_022.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar06a_20d_022_full.rec,  Reconstruction (Pixel Size 1.264 nm), 377.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-22/3dimage_7412/09mar06a_20d_022_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/hxp10-g8d32
title: Hyphomonas session14 27.5KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-05-22</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 130.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, overnight at 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-05-22-27/rawdata/</p>09may22b_bx22gr1_002.mrc,  Tilt Series (Pixel Size 0.774 nm), 427.8 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        09may22b_bx22gr1_002_1k.rec,  Reconstruction (Pixel Size 1.548 nm), 34.4 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.13918396
title: DETECTION _PROSODIQUE_Data_POST
DOI: 10.5281/zenodo.13918397
title: DETECTION _PROSODIQUE_Data_POST
DOI: 10.15468/dl.fhr52w
title: Occurrence Download

description: A dataset containing 2372 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is New Zealand",
 "TaxonKey is Botaurus poiciloptilus",
 "Year 2015-2025"
 ]
}

 The dataset includes 2372 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045417-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/zsm11-mhs63
title: Delftia nanopods

description: Delftia acidovorans Cs1-4 nanopod pellet
description: <strong>Tilt Series Date:</strong> 2009-02-22</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Delftia acidovorans</p>
<strong>Strain:</strong> Cs1-4</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 2°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: 0.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> imod</p>
<strong>Collaborators and Roles:</strong> grown by Bill Hickey at UW-Madison; data collected and processed by Elitza Tocheva</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Grown in MSM with phenanthrene. Nanopods enriched and sample taken from supernatant above pellet.</p>
<strong>Sample Preparation:</strong> 20nm gold, 1.5s blot, -2 offset</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-22-2/rawdata/</p>tube2.mrc,  Tilt Series (Pixel Size 0.4406 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        tube2.rec,  Reconstruction (Pixel Size 0.8813 nm), 204.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2009-02-22-2/3dimage_94582/tube2.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.uprzhe
title: Occurrence Download

description: A dataset containing 43 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Leporinus paranensis)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 43 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045419-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/5rv25-bmj56
title: Hyphomonas session8 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-03-06</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-64.0°, 64.0°), step: 2°, constant angular increment, dosage: 140.0 eV/Å²,  defocus: -8.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media...</p>
<strong>Sample Preparation:</strong> C-flat grid, 5nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-9/rawdata/</p>09mar06a_20d_009.mrc,  Tilt Series (Pixel Size 0.632 nm), 553.7 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-9/rawdata/09mar06a_20d_009.mrc"
        > <i class="download icon"></i> Download </a></p>

        09mar06a_20d_009_full.rec,  Reconstruction (Pixel Size 1.264 nm), 377.5 MB  
        
<a role="button" class="ui compact mini button" href="https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-03-06-9/3dimage_7392/09mar06a_20d_009_full.rec"
        > <i class="download icon"></i> Download </a></p>
DOI: 10.5281/zenodo.16947274
title: Parental Perspectives on Digital Story Telling for Children in India: A Mixed-Methods Study of Parental Motivations, Mediation, and Digital Literacy

description: The researchers surveyed 500 Indian parents of children under 13 years of age, collecting both quantitative data on device access and attitudes, as well as qualitative data on motivations and perceptions.
DOI: 10.5281/zenodo.16947275
title: Parental Perspectives on Digital Story Telling for Children in India: A Mixed-Methods Study of Parental Motivations, Mediation, and Digital Literacy

description: The researchers surveyed 500 Indian parents of children under 13 years of age, collecting both quantitative data on device access and attitudes, as well as qualitative data on motivations and perceptions.
DOI: 10.22002/1sjh5-ayb82
title: PAOI delta aer2

description: Pseudomonas aeruginosa delta aer2
description: <strong>Tilt Series Date:</strong> 2014-10-15</p>
<strong>Data Taken By:</strong> Ariane Briegel</p>
<strong>Species / Specimen:</strong> Pseudomonas aeruginosa</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 160.0 eV/Å²,  defocus: -10.0 μm,  magnification: 34000x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Kylie Watts</p>
<strong>Purification / Growth Conditions / Treatment:</strong> Streak on LB plates and incubate overnight at 37°C- Inoculate 5 mL MOPS Minimal Media Limited Nitrogen from plate and grow at 30°C for ~24 hours</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/aba2014-10-15-8/rawdata/</p>PAO1DeltaAer2MC0008_mcorr.mrc,  Tilt Series (Pixel Size 0.32 nm), 3.3 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        PAO1DeltaAer2MC0008_mcorr_full.rec,  Reconstruction (Pixel Size 1.28 nm), 688.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/sh15j-k6s85
title: Agro C58 22C liq

description: Agrobacterium tumefaciens
description: <strong>Tilt Series Date:</strong> 2014-05-28</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Agrobacterium tumefaciens</p>
<strong>Strain:</strong> </p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1.0°, constant angular increment, dosage: 200.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> From Pat Zambryski</p>
<strong>Purification / Growth Conditions / Treatment:</strong> cells were grown at 22C and induced with AS for one day in liquid</p>
<strong>Sample Preparation:</strong> Cells were not concentrated prior to freezing</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-05-28-18/3dimage_43046/</p>cd8_22C_liq0002_full.rec,  Reconstruction (Pixel Size 1.92 nm), 534.5 MB  
        
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        > <i class="download icon"></i> Download </a></p>

        cd8_22C_liq0002.mrc,  Tilt Series (Pixel Size 0.48 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.22002/whad4-8cd95
title: NR1769pKM101conjNR1769

description: Conjugation on 2% agar plate for 1h at 37C between skinny E. coli NR1769 having the F plasmid pKM101 and skinny E. coli NR1769
description: <strong>Tilt Series Date:</strong> 2014-10-24</p>
<strong>Data Taken By:</strong> Elitza Tocheva</p>
<strong>Species / Specimen:</strong> Escherichia coli</p>
<strong>Strain:</strong> NR1769 pKM101</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Microscope:</strong> Caltech Polara</p>
<strong>Acquisition Software:</strong> UCSFTomo</p>
<strong>Upload Method:</strong> pipeline</p>
<strong>Processing Software Used:</strong> Raptor</p>
<strong>Collaborators and Roles:</strong> Christian Baron made the strain with the plasmid.</p>
<strong>Sample Preparation:</strong> Vitrobot Mark IV</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/etl2014-10-24-25/rawdata/</p>NR1760_pk101_conj0012.mrc,  Tilt Series (Pixel Size 0.5 nm), 3.4 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        NR1760_pk101_conj0012_full.rec,  Reconstruction (Pixel Size 2.0 nm), 980.0 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.96neym
title: Occurrence Download

description: A dataset listing the 14528 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Taxon occurrence data for the FungalRoot database"
 ]
}

 The dataset's 14528 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045406-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/b0dv3-h9186
title: Pva 020710 MP47

description: Prosthecobacter vanneervenii, 10feb07a_MP47_Pva_exp_064,
description: <strong>Tilt Series Date:</strong> 2010-02-07</p>
<strong>Data Taken By:</strong> Martin Pilhofer</p>
<strong>Species / Specimen:</strong> Prosthecobacter vanneervenii</p>
<strong>Strain:</strong> None</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-60.0°, 60.0°), step: 1°, constant angular increment, dosage: 180.0 eV/Å²,  defocus: -10.0 μm,  magnification: 22500x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> cultured by Martin Pilhofer; data collected by Martin Pilhofer; processed by Martin Pilhofer</p>
<strong>Sample Preparation:</strong> quantifoil grid, 10nm gold, 100% humidity, blotting 1/-2/2/0/1/4/200</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/mpa2010-02-07-57/rawdata/</p>10feb07a_MP47_Pva_exp_064.mrc,  Tilt Series (Pixel Size 0.95 nm), 1.0 GB  
        
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        > <i class="download icon"></i> Download </a></p>

        10feb07a_MP47_Pva_exp_064_full.rec,  Reconstruction (Pixel Size 1.9 nm), 838.9 MB  
        
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        > <i class="download icon"></i> Download </a></p>
DOI: 10.15468/dl.wkyqhv
title: Occurrence Download

description: A dataset containing 16082 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Indonesia",
 "HasCoordinate is TRUE",
 "TaxonKey is one of (Grus rubicunda, Heliopais personatus, Amaurornis olivacea, Amaurornis olivacea magnirostris, Amaurornis phoenicurus, Aramidopsis plateni, Eulabeornis castaneoventris, Fulica atra, Gallicrex cinerea, Gallinula chloropus, Gallinula tenebrosa, Gallirallus philippensis, Gallirallus striatus, Gallirallus torquatus, Gymnocrex plumbeiventris, Gymnocrex rosenbergii, Gymnocrex talaudensis, Habroptila wallacii, Lewinia pectoralis, Megacrex inepta, Porphyrio porphyrio, Porphyrio porphyrio indicus, Porphyrio porphyrio poliocephalus, Porzana cinerea, Porzana fusca, Porzana paykullii, Porzana pusilla, Porzana tabuensis, Rallina eurizonoides, Rallina fasciata, Rallina forbesi, Rallina leucospila, Rallina mayri, Rallina rubra, Rallina tricolor)"
 ]
}

 The dataset includes 16082 records from 25 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0045420-250811113504898/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.22002/yqph2-9p025
title: Hyphomonas chq session19 34KX

description: high-order DNA, H-NS, nucleoid, asymmetric cell division
description: <strong>Tilt Series Date:</strong> 2009-06-25</p>
<strong>Data Taken By:</strong> Jian Shi</p>
<strong>Species / Specimen:</strong> Hyphomonas neptunium</p>
<strong>Strain:</strong> ATCC 15444</p>
<strong>Tilt Series Settings:</strong>  Single Axis, tilt range: (-61.0°, 61.0°), step: 2°, constant angular increment, dosage: 75.0 eV/Å²,  defocus: -7.0 μm,  magnification: 0x. </p>
<strong>Acquisition Software:</strong> Leginon</p>
<strong>Upload Method:</strong> rundir</p>
<strong>Processing Software Used:</strong> raptor</p>
<strong>Collaborators and Roles:</strong> Cultured by Jian; data collected by Jian; processed by Jian</p>
<strong>Purification / Growth Conditions / Treatment:</strong> exponential phase in PYE media, chloroquine 1.0mg/ml, 4degree...</p>
<strong>Sample Preparation:</strong> QF grid, 10nm gold, 100% humidity...</p>
description: Files available via S3 at https://sdsc.osn.xsede.org/ini210004tommorrell/tomography_archive/jsa2009-06-25-5/rawdata/</p>09jun25a_bx217d_012.mrc,  Tilt Series (Pixel Size 0.632 nm), 536.9 MB  
        
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        09jun25a_bx217d_012_full.rec,  Reconstruction (Pixel Size 1.264 nm), 419.4 MB  
        
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