cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5066/p9ythwc4
title: Idealized COAWST model cases for testing sensitivity of sediment transport and marsh accretion to vegetation, wave, and sediment parameters

description: Marshes may drown if they are unable to accrete sediment at the rate of sea level rise, but predicting the rate of sediment accretion at different marshes is challenging because many processes (e.g. tidal range, wave frequency) and conditions (e.g. available sediment, vegetation density, shape of the marsh edge) impact it. The Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST, Warner and others 2019; Warner and others 2010) model was used to simulate three-dimensional hydrodynamics, waves, and sediment transport on a marsh platform in an idealized domain. The computational grid was 400 (20) cells in the cross-shore (along-shore) directions with 10 vertical sigma layers, and a cross-shore horizontal resolution that ranged between 0.2 and 14m. The model domain was intended to mimic the China Camp marsh in San Francisco Bay, where extensive observations of flow and sediment were collected in 2016 (Lacy and others 2020, Lacy and others 2017). The model was then run across 66 different scenarios to evaluate the sensitivity of accretion on the marsh platform, wave dissipation, sediment flux, and bed shear stress to wave, vegetation, and sediment model parameters. This subset of runs was selected via the equadratures (Seshadri and others, 2021) framework, and together they enable the quantification of model sensitivity to the specified set of parameters. A modified version of the COAWST v3.7 model was used for these runs: branch v3.7-marsh. It is available at code.usgs.gov/coawstmodel/COAWST/-/tree/v3.7-marsh.
DOI: 10.5281/zenodo.12176170
title: Survey of library information science graduates' readiness to create an information system in the library (using open science as an example)

description: Survey "Readiness of library information science graduates to create an information system in the library (on the example of open science)"

The research is aimed at identifying the degree of readiness of future specialists in the field of library and information science to work in new and relevant areas of library activities related to the development of information infrastructure of open science.

The survey consists of 4 thematic blocks and contains 21 questions.

The survey was attended by 54 students from 10 Russian universities, studying in the direction of training 51.03.06 "Library and Information Science".

The results of this survey will serve as a basis for the development of professional development programmes on various aspects of the functioning of open science for specialists in the field of library and information activity.

Опрос «Готовность выпускников направления библиотечная информационная наука к созданию системы информирования в библиотеке (на примере открытой науки)»

Исследование направленно на выявление степени готовности будущих специалистов в области библиотечно-информационной деятельности к работе в новых и актуальных направлениях деятельности библиотек, связанных с развитием информационной инфраструктуры открытой науки.

Опрос состоит из 4-х тематических блоков и содержит 21 вопрос.

В опросе приняли участие 54 студента из 10 российских вузов, обучающихся по направлению подготовки 51.03.06 «Библиотечно-информационная деятельность».

Результаты данного опроса послужат основой разработки программ повышения квалификации по различным аспектам функционирования открытой науки для специалистов в области библиотечно-информационной деятельности.
DOI: 10.5281/zenodo.12542820
title: Supporting Information: Sedimentary events at the Jurassic–Cretaceous transition in the Slovenian Basin (Alpine Atlantic): further evidences for palaeoenvironmental record in pelagic sediments

description: Dataset containing raw elemental geochemistry data (ICP-MS, pXRF and GRS measurements), stable carbon and oxygen isotopes, as well as rock magnetic data from the Tithonian-Berriasian of the Petrovo Brdo section (Slovenia). Supplementary information for the research entitled "The Jurassic-Cretaceous transition in the Slovenian Basin (Alpine Atlantic): further evidence for palaeoenvironmental record in pelagic sediments" published in Geochemistry, Geophysics, Geosystems.
DOI: 10.5281/zenodo.13358157
title: Raw data for NOCs and their simulated molar absorption coefficients

description: This is the raw data for NOCs and their simulated molar absorption coefficients.
DOI: 10.5281/zenodo.14193855
title: HiRISE and MOC-NA Images Used in "Mapping of Western Valles Marineris Light-toned Layered Deposits and Newly Classified Rim Deposits"

description: These files contain the images used in the paper "Mapping of Western Valles Marineris Light-toned Layered Deposits and Newly Classified Rim Deposits"

All images examined, and all images used in the creation of figures are listed within these documents. They are seperated by region, and type of image (HiRISE, MOC-NA)
DOI: 10.60817/1w6d-6p86
title: Longitudinal Brain Correlates of Multisensory Lexical Processing in Children
DOI: 10.60817/60vy-2y39
title: Age-related differences in auditory cortex activity during spoken word recognition
DOI: 10.60817/fsc3-d495
title: An fMRI Dataset for Concept Representation with semantic feature annotations
DOI: 10.6084/m9.figshare.25219232
title: Comprehensive sex- and tissue-specific transcriptome of the destructive invasive pest <i>Tuta absoluta </i>adults

description: In this study, we generated a comprehensive sex- and tissue-specific transcriptome data of <i>Tuta absoluta</i> adults, which is a perfect sequel to the recently released chromosome-level genome data. Five tissues (antenna, head without antenna, wing, legs, thorax without wings and abdomen) of both sexes were sampled. Totally, 36 libraries (three biological replicates for each tissue) were generated.
DOI: 10.6084/m9.figshare.27750144
title: Supplementary Material for: Steroid-refractory immune-related hepatitis caused by pembrolizumab with stage IVB non-small cell lung cancer: a case report

description: Introduction: We report the case of a man in his 50s with stage IVB non-small cell lung cancer who developed severe immune-related hepatitis caused by pembrolizumab. 
Case presentation: He received carboplatin, pemetrexed, and pembrolizumab as first-line therapy. After four courses, each of the triplet regimen and maintenance therapy with pemetrexed and pembrolizumab, the patient developed immune-related pneumonitis and colitis. Therefore, pemetrexed and pembrolizumab were discontinued, and 0.5 mg/kg/day prednisolone was started. Despite gradual reduction of the prednisolone to 15 mg/day along with resolution of the pneumonitis and colitis, hepatic dysfunction occurred (elevated serum bilirubin and transaminase levels). We diagnosed immune-related hepatitis based on liver biopsy results and negative results for other causes, such as viral infection. We increased the prednisolone dose to 2 mg/kg/day; however, the hepatic dysfunction was not resolved. Upon sequential methylprednisolone pulse therapy (1000 mg/day), mycophenolate mofetil, and azathioprine treatment, the hepatic dysfunction plateaued but was not resolved. The patient did not respond to steroids for immune-related hepatitis, developed infectious enteritis owing to a compromised state, and died of sepsis on day 107 after diagnosis of immune-related hepatitis. Conclusion: This case highlights the importance of early diagnosis of steroid-refractory disease, prompt initiation of immunosuppressive agents, and steroid dose reduction in such cases. The changes in liver function during steroid non-response and immunosuppressive drug induction in this case are valuable as a reference for future cases of immune related adverse event (irAE) hepatitis.
DOI: 10.6084/m9.figshare.28081706
title: Supplementary Material for: Adjuvant therapy with pembrolizumab in renal cell carcinoma: real-world experiences from a retrospective, multi-institutional cohort

description: Introduction:
Adjuvant pembrolizumab versus placebo significantly improved disease-free survival (DFS) in renal cell carcinoma (RCC) patients at high risk of recurrence following nephrectomy in KEYNOTE-564 trial (NCT03142334). The objective of this study was to evaluate efficacy and safety of adjuvant pembrolizumab in a real-world setting.

Methods:
In this multicenter retrospective study, RCC patients receiving adjuvant pembrolizumab between 01/22 and 10/23 at seven tertiary referral centers were included. DFS and treatment safety were assessed.

Results:
52 patients with RCC were included. 24 (46%), 5 (9.6 %), 22 (42%) and 1 (1.9%) patients were classified as intermediate to high risk (IR to HR), high risk (HR), M1 with no evidence of disease (M1NED) and unknown. At a median follow-up of 6 months, DFS rates at 6 months were 64.2% in the overall cohort. In subgroup analyses, M1NED patients demonstrated significantly lower DFS compared to non-metastatic (combined: IR to HR/ HR) patients (log rank: p=0.025). Regarding toxicity, grade 3 or higher adverse events occurred in 26% of patients. Treatment discontinuations were reported in 20% of the patients. 

Conclusion: 
Recurrence rates in the M1NED group remained high and occurred earlier in our real-world compared to KEYNOTE-564. Long-term toxicities were comparable to clinical trials data.
DOI: 10.25625/vuetwt
title: Source data files for the article "Bridging the gap between presynaptic hair cell function and neural sound encoding"

description: Source data files for the article "Bridging the gap between presynaptic hair cell function and neural sound encoding"
DOI: 10.5063/f1k35s3h
title: Western Indian Ocean Coral Diversity

description: Coral reefs are threatened by climate change, thus effective policies and management require spatial prioritization for conservation investments. Our aim was to develop a spatially explicit ecological model to predict current (2020) and future (2050) numbers of coral taxa at moderate scales (i.e., ~6 km2). Our machine learning predictive models of coral community attributes in 7039 mapped reef cells in the western Indian Ocean were based on 35 spatially complete influential environmental proxies trained with ~1000 field surveys. Four models explored: influences of climate change, water quality, direct human-resource extraction, and variable selection processes on numbers of coral taxa. Two predictive models examined the predictions of all variables and compared them to a variable-restricted climate change (8 commonly used variables) and human influence model (9 variables). The most frequently selected temperature variables in all models were the median, skewness, excess heat, rate of temperature rise, and kurtosis. However, non-temperature variables of observer, depth, wave energy, dissolved oxygen, salinity, chlorophyll-a, calcite concentrations, sunlight, and net primary productivity were frequently as important or stronger. Human influences of national jurisdiction, distance to people, sediments, and nutrients were selected but less influential when compared to the climate or the full variable models. Comparing models indicated the importance of variable pre-selection processes and variable interactions in predicting climate change and human influences on coral diversity. Comparing climate scenarios in the moderate RCP2.6 and extreme RCP8.5 emission scenarios indicated fewer losses in coral taxa (RCP2.6 = 5.2%, RCP8.5 = 8.1% respectively) relative to cover (RCP2.6 = 14%, RCP8.5 = 34%) over the 30 years. Excess heat and rate of temperature rise variables used in the Intergovernmental Panel on Climate Change (IPCC) forecasts predict more negative effects on corals than our four models but shown here to have low to modest effects.
DOI: 10.24432/c59k5f
title: Air Quality
DOI: 10.15485/2441497
title: Maps of land surface phenology derived from PlanetScope data, 2018-2022, Teller, Kougarok, and Council, Seward Peninsula

description: Remote sensing maps of land surface phenology derived from PlanetScope (Planet Team, 2017) normalized differential greenness index (NDGI; Yang et al., 2019) time series data. These maps include four phenological timing metric - start of spring (SOS), end of spring (EOS), start of fall (SOF), and end of fall (EOF), corresponding NDGI value at the four phenological timings, and annual maximum and minimum NDGI. This package includes maps for Next-Generation Ecosystem Experiment Arctic (NGEE Arctic)’s Teller Mile Marker (MM) 27, Kougarok MM64, and Council MM 71 watersheds. Maps of 5 years from 2018 to 2022 are included in this dataset. The map data and metadata are provided as image (ENVI) and text (*.txt, *hdr) formats. Additional supporting map quicklooks are provided as GIS *.kml files. These datasets are provided in support of Yang et al., (In revision) “Fine-scale Landscape Characteristics, Vegetation Composition, and Snowmelt Timing Control Phenological Heterogeneity across Arctic Tundra Landscapes”The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a research effort to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research.The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska.Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).
DOI: 10.5281/zenodo.11078418
title: Upward, MeV-class electron beams over Jupiter's Main Aurora; Selected data for

description: This submission provides selected ASCII data that is utilzed in a scientific study entitled: "Upward, MeV-class electron beams over Jupiter’s Main Aurora".  A PDF of the manuscript is included here.  The 13 authors of this study are identified in the PDF manuscirpt. The data files are labeled according to the figure numbers and panels used in the manuscript.  The PDF of the paper serves to document the qualities of the data submitted. The abstract of the manuscript is as follows: 

Abstract: Jupiter’s poleward (Zone II) main aurora exhibits bi-directional electron acceleration; upward acceleration dominates but downward acceleration generates strong aurora. During Juno’s first perijove (PJ1), the upward acceleration manifested as narrow electron angular beams (within ~5 of the magnetic field) over the 30-1200 keV energy range of Juno’s Jupiter Energetic Particle Detector Investigation (JEDI).  These beams can be simply connected (non-uniquely) to >10 to perhaps 100’s of MeV electrons that penetrated the radiation shielding of the camera head of the Magnetometer Investigation’s Advanced Stellar Compass (ASC).  The most intense of those multiple MeV populations are shown to have been highly directional and propagating upwards. How auroral processes generate such beams is unknown.  With azimuthal symmetry assumed (not demonstrated here), these beams provided >1026 s-1 of >30 keV electrons to Jupiter’s vast magnetosphere, a possibly critical and dominating source of energetic electrons to that region and ultimately to Jupiter’s radiation belts.
DOI: 10.5281/zenodo.12528350
title: Located Earthquakes Loki's Castle 2019-2020 Deployment

description: The dataset includes information about the 6977 located events from the 2019-2020 Loki ocean bottom seismometer deplyoment (network code: 8M). The events cover the deplyoment period of 11 months and were recorded by 8 ocean bottom seismometers west of Loki's Castle hydrothermal vent field with a station spacing of 5-6 km. Earthquakes were detected using Lassie, automatically picked using PhaseNet, and partially manually re-picked. Events for location were chosen to have at least 7 P phase picks and were located using NonLinLoc with the EDT_OT inversion scheme. Amplitudes were automatically picked with SEISANs automag function. Local magnitudes were calculated using the hypocentral distance.
DOI: 10.5281/zenodo.14145108
title: Dataset and Code used in ApJ publication: "A novel approach to understanding the link between supermassive black holes and host galaxies"

description: All the data of this paper is found under BH_M-sigma_compilation/Data

The main data tables are found the at BH_M-sigma_compilation/Data/BHcompilation_updated.csv

The SDSS data galSpecInfo-dr8.fits and galSpecLine-dr8.fits can be found at: https://www.sdss3.org/dr8/spectro/spectro_access.php

The main code for this paper is at BH_M-sigma_compilation/Code/Mixture_Upper_Limits and consists of the 3 files for the Stan model, R code and Python code respectively: model.stan stan_fit.r hurdle_model.ipynb

The figures generated for the paper can be found at BH_M-sigma_compilation/Figures

A novel approach to understanding the link between supermassive black holes and host galaxies © 2024 by Gabriel Sasseville is licensed under CC BY 4.0. To view a copy of this license, visit https://creativecommons.org/licenses/by/4.0/
DOI: 10.5067/temsc-3mj62
title: JPL GRACE and GRACE-FO Mascon Ocean, Ice, and Hydrology Equivalent Water Height Release 06 Version 02
DOI: 10.5281/zenodo.14554498
title: Reflection spectra obtained by simulation under different  periods P and  opening angles α

description: Fig_7_P_CSV is the reflection spectra obtained by simulation under different periods P.

Fig_7_α_CSV is the reflection spectra obtained by simulation under different opening angles α.
DOI: 10.5281/zenodo.14554499
title: Reflection spectra obtained by simulation under different  periods P and  opening angles α

description: Fig_7_P_CSV is the reflection spectra obtained by simulation under different periods P.

Fig_7_α_CSV is the reflection spectra obtained by simulation under different opening angles α.
DOI: 10.5281/zenodo.997347
title: Grail Crustal Thickness Archive

description: This archive contains crustal thickness models of the Moon derived from GRAIL (Gravity Recovery And Interior Laboratory) gravity. The original crustal thickness data were published in map form in <em>Wieczorek et al. </em>(2013).

Wieczorek, M. A., G. A. Neumann, F. Nimmo, W. S. Kiefer, G. J. Taylor, H. J. Melosh, R. J. Phillips, S. C. Solomon, J. C. Andrews-Hanna, S. W. Asmar, A. S. Konopliv, F. G. Lemoine, D. E. Smith, M. M. Watkins, J. G. Williams, M. T. Zuber, The crust of the Moon as seen by GRAIL, <em>Science</em>, <strong>339</strong>, 671-675, doi:10.1126/science.1231530, 2013.
DOI: 10.15468/dl.6g7366
title: Occurrence Download

description: A dataset containing 2042 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Engraulis Cuvier, 1816)",
 "Country is Japan"
 ]
}

 The dataset includes 2042 records from 48 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048470-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d7p8x4
title: Occurrence Download

description: A dataset containing 6459 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Sambucus L."
 ]
}

 The dataset includes 6459 records from 44 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048471-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.anzm85
title: Occurrence Download

description: A dataset containing 82 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Pseudaspius Dybowski, 1869)",
 "Country is Japan"
 ]
}

 The dataset includes 82 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048472-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.28091702
title: CRISPR/Cas9 介导<i>VgrG2</i>野生致病性<i>大肠</i>以减轻对细胞损伤和自噬的影响

description: CRISPR/Cas9 系统是一种起源于原核生物的免疫防御机制，由 CRISPR 序列和 Cas9 蛋白组成。它通过识别外源 DNA 序列并将其整合到 CRISPR 垫片中来发挥作用。Cas9 核酸酶识别外源 DNA 上的前间隔区相邻基序 （PAM） 并切割外源 DNA，从而保护宿主细胞。
DOI: 10.6084/m9.figshare.28091702.v1
title: CRISPR/Cas9 介导<i>VgrG2</i>野生致病性<i>大肠</i>以减轻对细胞损伤和自噬的影响

description: CRISPR/Cas9 系统是一种起源于原核生物的免疫防御机制，由 CRISPR 序列和 Cas9 蛋白组成。它通过识别外源 DNA 序列并将其整合到 CRISPR 垫片中来发挥作用。Cas9 核酸酶识别外源 DNA 上的前间隔区相邻基序 （PAM） 并切割外源 DNA，从而保护宿主细胞。
DOI: 10.15468/dl.yxhvgk
title: Occurrence Download

description: A dataset containing 3637 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rhynchocypris Günther, 1889)",
 "Country is Japan"
 ]
}

 The dataset includes 3637 records from 36 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048473-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xebm8q
title: Occurrence Download

description: A dataset containing 4087 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Grus nigricollis Prjevalsky, 1876"
 ]
}

 The dataset includes 4087 records from 27 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048474-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.dde5ak
title: Occurrence Download

description: A dataset containing 24 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Odonata observations from SE Asia",
 "Geometry POLYGON((128.11992 -2.83374,127.86269 -3.14044,127.71759 -3.61203,128.07705 -3.56586,128.22545 -3.32512,128.42002 -3.47682,128.93778 -3.45373,129.98978 -3.59884,130.7219 -3.9583,131.00221 -3.77032,130.94285 -3.39437,129.34671 -2.59465,128.4596 -2.63093,128.11992 -2.83374))"
 ]
}

 The dataset includes 24 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048475-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.h9y683
title: Occurrence Download

description: A dataset containing 3009 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Opsariichthys Bleeker, 1863)",
 "Country is Japan"
 ]
}

 The dataset includes 3009 records from 41 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048476-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cszb7d
title: Occurrence Download

description: A dataset containing 103207 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Orchis militaris L."
 ]
}

 The dataset includes 103207 records from 712 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0048458-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.