cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8875790.v1
title: Supplementary Material for: Expression of Dopamine Receptors in Immune Regulatory Cells

description: <b><i>Objective:</i></b> Parkinson’s disease (PD) patients are usually treated with L-dopa and/or dopaminergic agonists, which act by binding five types of dopaminergic receptors (DRD1–DRD5). Peripheral immune cells are known to express dopamine receptors on their membrane surface, and therefore they could be directly affected by the treatment. Regulatory cells are the main modulators of inflammation, but it is not clear whether dopaminergic treatment could affect their functions. While only regulatory T cells (Tregs) have been proved to express dopamine receptors, it is not known whether other regulatory cells such as CD8regs, regulatory B cells (Bregs), tolerogenic dendritic cells, and intermediate monocytes also express them. <b><i>Methods:</i></b> The expression of dopamine receptors in Tregs, CD8regs, Bregs, tolerogenic dendritic cells, and intermediate monocytes was herein evaluated. cDNA from 11 PD patients and 9 control subjects was obtained and analyzed. <b><i>Results:</i></b> All regulatory cell populations expressed the genes coding for dopamine receptors, and this expression was further corroborated by flow cytometry. These findings may allow us to propose regulatory populations as possible targets for PD treatment. <b><i>Conclusions:</i></b> This study opens new paths to deepen our understanding on the effect of PD treatment on the cells of the regulatory immune response.
DOI: 10.6084/m9.figshare.8882567.v4
title: Spatial- and temporal-patterns of global soil heterotrophic respiration in terrestrial ecosystems

description: There are two datasets in this data repository: the first one, named “RH.RF.720.360.1980.2016.Yearly.nc”, is a global heterotrophic respiration (RH) product with a spatial resolution of with 0.5 degree and a time resolution of one year. The global RH product is modelled by Random Forest algorithm with field observations and environmental variables. The environmental variables include temperature, precipitation, diurnal temperature range from CRU TS v.4.01 from 1901 to 2016; shortwave radiation; soil organic carbon content from soil grid data (Hengl et al., 2017); soil nitrogen content from ORNL DAAC; nitrogen deposition data from the Earth System Models of GISS-E2-R, CCSM-CAM3.5 and GFDL-AM3 from the 1850s to 2000s; Palmer Drought Severity Index (PDSI); and soil water content.The RH product is provided in network Common Data Form, version 4 (netCDF-4, short name: nc) data format (https://www.unidata.ucar.edu/software/netcdf/). The RH product is named using the following regulation:"RH.modelling approaches.spatial resolution.start YYYY. end YYYY.temporal resolution.nc"“RH.RF.720.360.1980.2016.Yearly.nc” means modelled RH flux by Random Forest (RF) with a 0.5° spatial resolution (size 720 along longitude and 360 along latitude) from start year 1980 to end year 2016 with a yearly temporal resolution.The second file, named “dataset.xlsx”, is the field observation from peer review publications combining Global Soil Respiration Database (SRDB), (version 3, Bond-Lamberty and Thomson, 2014), which is publicly available at https://github.com/bpbond/srdb. Besides, The database was further updated using observations collected from the China Knowledge Resource Integrated Database (www.cnki.net) up to March 2018 according to the criteria of SRDB. This dataset is provided in Microsoft Excel in format of “.xlsx”.
DOI: 10.6084/m9.figshare.8882567.v5
title: A globally gridded heterotrophic respiration dataset based on field observations

description: There are two datasets in this data repository: the first one, named “RH.RF.720.360.1980.2016.Yearly.nc”, is a global heterotrophic respiration (RH) product with a spatial resolution of with 0.5 degree and a time resolution of one year. The global RH product is modelled by Random Forest algorithm with field observations and environmental variables. The environmental variables include temperature, precipitation, diurnal temperature range from CRU TS v.4.01 from 1901 to 2016; shortwave radiation; soil organic carbon content from soil grid data (Hengl et al., 2017); soil nitrogen content from ORNL DAAC; nitrogen deposition data from the Earth System Models of GISS-E2-R, CCSM-CAM3.5 and GFDL-AM3 from the 1850s to 2000s; Palmer Drought Severity Index (PDSI); and soil water content.The RH product is provided in network Common Data Form, version 4 (netCDF-4, short name: nc) data format (https://www.unidata.ucar.edu/software/netcdf/). The RH product is named using the following regulation:"RH.modelling approaches.spatial resolution.start YYYY. end YYYY.temporal resolution.nc"“RH.RF.720.360.1980.2016.Yearly.nc” means modelled RH flux by Random Forest (RF) with a 0.5° spatial resolution (size 720 along longitude and 360 along latitude) from start year 1980 to end year 2016 with a yearly temporal resolution.The second file, named “dataset.xlsx”, is the field observation from peer review publications combining Global Soil Respiration Database (SRDB), (version 3, Bond-Lamberty and Thomson, 2014), which is publicly available at https://github.com/bpbond/srdb. Besides, The database was further updated using observations collected from the China Knowledge Resource Integrated Database (www.cnki.net) up to March 2018 according to the criteria of SRDB. This dataset is provided in Microsoft Excel in format of “.xlsx”.
DOI: 10.15131/shef.data.8874989
title: DATA: Apetrei et. al., "Unsteady Shock Front Waviness in Shock-Buffet of Transonic Aircraft"

description: This item contains supplementary animations and the dataset for the Apetrei et. al., "Unsteady Shock Front Waviness in Shock-Buffet of Transonic Aircraft", 2019 publication.<br>
DOI: 10.6084/m9.figshare.8882567.v6
title: A globally gridded heterotrophic respiration dataset based on field observations

description: There are two datasets in this data repository: the first one, named “RH.RF.720.360.1980.2016.Yearly.nc”, is a global heterotrophic respiration (RH) product with a spatial resolution of with 0.5 degree and a time resolution of one year. The global RH product is modelled by Random Forest algorithm with field observations and environmental variables. The environmental variables include temperature, precipitation, diurnal temperature range from CRU TS v.4.01 from 1901 to 2016; shortwave radiation; soil organic carbon content from soil grid data (Hengl et al., 2017); soil nitrogen content from ORNL DAAC; nitrogen deposition data from the Earth System Models of GISS-E2-R, CCSM-CAM3.5 and GFDL-AM3 from the 1850s to 2000s; Palmer Drought Severity Index (PDSI); and soil water content.The RH product is provided in network Common Data Form, version 4 (netCDF-4, short name: nc) data format (https://www.unidata.ucar.edu/software/netcdf/). The RH product is named using the following regulation:"RH.modelling approaches.spatial resolution.start YYYY. end YYYY.temporal resolution.nc"“RH.RF.720.360.1980.2016.Yearly.nc” means modelled RH flux (g C m<sup>-2</sup> yr<sup>-1</sup>) by Random Forest (RF) with a 0.5° spatial resolution (size 720 along longitude and 360 along latitude) from start year 1980 to end year 2016 with a yearly temporal resolution.The second file, named “dataset.xlsx”, is the field observation from peer review publications combining Global Soil Respiration Database (SRDB), (version 3, Bond-Lamberty and Thomson, 2014), which is publicly available at https://github.com/bpbond/srdb. Besides, the database was further updated using observations collected from the China Knowledge Resource Integrated Database (www.cnki.net) up to March 2018 according to the criteria of SRDB. This dataset is provided in Microsoft Excel in format of “.xlsx”.R codes to produce main results are available.
DOI: 10.15131/shef.data.8874989.v1
title: DATA: Apetrei et. al., "Unsteady Shock Front Waviness in Shock-Buffet of Transonic Aircraft"

description: This item contains supplementary animations and the dataset for the Apetrei et. al., "Unsteady Shock Front Waviness in Shock-Buffet of Transonic Aircraft", 2019 publication.<br>
DOI: 10.6084/m9.figshare.8874920
title: MOESM7 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 7: Table S4. List of signal-peptide-harboring proteins identified in each carbon source.
DOI: 10.6084/m9.figshare.8874926
title: MOESM8 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 8: Table S5. Relative expression level (Z-score) of expressed CAZymes under four carbon sources (glucose, cellobiose, cellulose and corn stover) with three biological replicates.
DOI: 10.6084/m9.figshare.8874920.v1
title: MOESM7 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 7: Table S4. List of signal-peptide-harboring proteins identified in each carbon source.
DOI: 10.6084/m9.figshare.8874926.v1
title: MOESM8 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 8: Table S5. Relative expression level (Z-score) of expressed CAZymes under four carbon sources (glucose, cellobiose, cellulose and corn stover) with three biological replicates.
DOI: 10.6084/m9.figshare.8874911
title: MOESM6 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 6: Table S3. The LFQ intensity of proteins in secretomes under various carbon substrates in R. papyrosolvens.
DOI: 10.6084/m9.figshare.8874914
title: Additional file 2 of Relation between DNA ionization potentials, single base substitutions and pathogenic variants

description: Table S4. Excel file with the normalized and the standard SBS frequencies for single bases (sheet-Single), base doublets (sheet-Doublet), triplets (sheet-Triplet), quadruplets (sheet-Quadruplet), and quintuplets (sheet-Quintuplet). In (sheet-ObsExp), the frequency of observation of the motifs in the different gene regions are reported. (sheet-AverageVSComp) contains the comparison between the vIPs of the quadruplets computed using MP2 with those computed by averaging the MP2 vIPs of the overlapping triplets or doublets, and of the constituent nucleobases. Finally, in (sheet-MP2vsM06-2X), the comparison of the triplet vIPs computed with MP2 with those computed with M06-2X is reported. (XLSX 330 kb)
DOI: 10.6084/m9.figshare.8874911.v1
title: MOESM6 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 6: Table S3. The LFQ intensity of proteins in secretomes under various carbon substrates in R. papyrosolvens.
DOI: 10.6084/m9.figshare.8874914.v1
title: Additional file 2 of Relation between DNA ionization potentials, single base substitutions and pathogenic variants

description: Table S4. Excel file with the normalized and the standard SBS frequencies for single bases (sheet-Single), base doublets (sheet-Doublet), triplets (sheet-Triplet), quadruplets (sheet-Quadruplet), and quintuplets (sheet-Quintuplet). In (sheet-ObsExp), the frequency of observation of the motifs in the different gene regions are reported. (sheet-AverageVSComp) contains the comparison between the vIPs of the quadruplets computed using MP2 with those computed by averaging the MP2 vIPs of the overlapping triplets or doublets, and of the constituent nucleobases. Finally, in (sheet-MP2vsM06-2X), the comparison of the triplet vIPs computed with MP2 with those computed with M06-2X is reported. (XLSX 330 kb)
DOI: 10.6084/m9.figshare.8874890
title: MOESM3 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 3: Table S2. List of the putative CAZymes in the genome of R. papyrosolvens.
DOI: 10.6084/m9.figshare.8874890.v1
title: MOESM3 of Secretomic analyses of Ruminiclostridium papyrosolvens reveal its enzymatic basis for lignocellulose degradation

description: Additional file 3: Table S2. List of the putative CAZymes in the genome of R. papyrosolvens.
DOI: 10.6084/m9.figshare.8874791
title: Additional file 4: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Tiassale. (XLS 52 kb)
DOI: 10.6084/m9.figshare.8874797
title: Additional file 1: of Transcultural adaptation and psychometric study of the French version of the nursing home survey on patient safety culture questionnaire

description: a. Nursing Home Survey on Patient Safety. b. French version of the NHSOPS questionnaire. (ZIP 334 kb)
DOI: 10.6084/m9.figshare.8874797.v1
title: Additional file 1: of Transcultural adaptation and psychometric study of the French version of the nursing home survey on patient safety culture questionnaire

description: a. Nursing Home Survey on Patient Safety. b. French version of the NHSOPS questionnaire. (ZIP 334 kb)
DOI: 10.6084/m9.figshare.8874785
title: Additional file 3: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Vitre. (XLS 54 kb)
DOI: 10.6084/m9.figshare.8874791.v1
title: Additional file 4: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Tiassale. (XLS 52 kb)
DOI: 10.6084/m9.figshare.8874779
title: Additional file 2: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Gagnoa. (XLS 49 kb)
DOI: 10.6084/m9.figshare.8874785.v1
title: Additional file 3: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Vitre. (XLS 54 kb)
DOI: 10.6084/m9.figshare.8874773
title: MOESM5 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 5. Desirability function values.
DOI: 10.6084/m9.figshare.8874779.v1
title: Additional file 2: of Evidence of insecticide resistance selection in wild Anopheles coluzzii mosquitoes due to agricultural pesticide use

description: BOTTLE TEST RESULTS SHEET of Anopheles coluzzii from Gagnoa. (XLS 49 kb)
DOI: 10.6084/m9.figshare.8874767
title: MOESM4 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 4. Results of the amount of ART/LUM in FDC tablets.
DOI: 10.6084/m9.figshare.8874773.v1
title: MOESM5 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 5. Desirability function values.
DOI: 10.6084/m9.figshare.8874764
title: MOESM3 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 3. Physical characteristics, packaging and labelling information.
DOI: 10.6084/m9.figshare.8874767.v1
title: MOESM4 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 4. Results of the amount of ART/LUM in FDC tablets.
DOI: 10.6084/m9.figshare.8874764.v1
title: MOESM3 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 3. Physical characteristics, packaging and labelling information.
DOI: 10.6084/m9.figshare.8874743
title: MOESM1 of Domain swapping of complementarity-determining region in nanobodies produced by Pichia pastoris

description: Additional file 1. Additional tables.
DOI: 10.6084/m9.figshare.8874746
title: MOESM1 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 1. Checklist. Physical characteristics, packaging and labelling information.
DOI: 10.6084/m9.figshare.8874743.v1
title: MOESM1 of Domain swapping of complementarity-determining region in nanobodies produced by Pichia pastoris

description: Additional file 1. Additional tables.
DOI: 10.6084/m9.figshare.8874746.v1
title: MOESM1 of Quality of fixed dose artemether/lumefantrine products in Jimma Zone, Ethiopia

description: Additional file 1. Checklist. Physical characteristics, packaging and labelling information.
DOI: 10.6084/m9.figshare.8874647
title: Additional file 5: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S4. The SD expressed genes list for SV + α4-1BB vs. SV group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874656
title: Additional file 6: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S5. The SD expressed gene lists among all tumor cured mice groups. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8874647.v1
title: Additional file 5: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S4. The SD expressed genes list for SV + α4-1BB vs. SV group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874644
title: Additional file 2: of Circulating T cell subsets are associated with clinical outcome of anti-VEGF-based 1st-line treatment of metastatic colorectal cancer patients: a prospective study with focus on primary tumor sidedness

description: Spreadsheet with data generated and analyzed during the study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8874656.v1
title: Additional file 6: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S5. The SD expressed gene lists among all tumor cured mice groups. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.8874635
title: Additional file 3: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S2. The upregulated cell movement pathway for SV vs. untreated group by IPA. SV induced SD upregulated gene sets are clustered by DAVID analysis (SV vs. Untreated). Gene clusters are ranked by enrichment score. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8874641
title: Additional file 4: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S3. The SD expressed genes list for SV + α4-1BB vs. untreated group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874644.v1
title: Additional file 2: of Circulating T cell subsets are associated with clinical outcome of anti-VEGF-based 1st-line treatment of metastatic colorectal cancer patients: a prospective study with focus on primary tumor sidedness

description: Spreadsheet with data generated and analyzed during the study. (XLSX 20 kb)
DOI: 10.6084/m9.figshare.8874641.v1
title: Additional file 4: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S3. The SD expressed genes list for SV + α4-1BB vs. untreated group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874632
title: Additional file 2: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S1. The SD expressed genes list for SV vs. untreated group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874635.v1
title: Additional file 3: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S2. The upregulated cell movement pathway for SV vs. untreated group by IPA. SV induced SD upregulated gene sets are clustered by DAVID analysis (SV vs. Untreated). Gene clusters are ranked by enrichment score. (XLSX 9 kb)
DOI: 10.6084/m9.figshare.8874632.v1
title: Additional file 2: of Molecular and metabolic pathways mediating curative treatment of a non-Hodgkin B cell lymphoma by Sindbis viral vectors and anti-4-1BB monoclonal antibody

description: Table S1. The SD expressed genes list for SV vs. untreated group by RNA-Seq (q
DOI: 10.6084/m9.figshare.8874572
title: CTP, Mayo Risk score and stage of fibrosis

description: This file includes CTP-, Mayo Risk score and stage of fibrosis.
DOI: 10.6084/m9.figshare.8874581
title: grid.438526.e

description: Network Graphs for institution grid.438526.e created for "What Does a University Look Like?" poster
DOI: 10.6084/m9.figshare.8874512
title: internet and private space.jalalvand.sav

description: This study aimed to investigate the relationship between using the Internet and the tendency to self-showing. Information obtained from the sample of 225 subjects in this study were analyzed with spss software and the relationship between variables was assessed through correlation test.
DOI: 10.6084/m9.figshare.8874572.v1
title: CTP, Mayo Risk score and stage of fibrosis

description: This file includes CTP-, Mayo Risk score and stage of fibrosis.
DOI: 10.6084/m9.figshare.8874497
title: Numerical Computation course

description: Numerical Computation course- teaching material
DOI: 10.6084/m9.figshare.8874497.v1
title: Numerical Computation course

description: Numerical Computation course- teaching material
DOI: 10.6084/m9.figshare.8874428
title: Supplementary Material for: Does Body Mass Index Impact the Outcomes of Ultrasound-Guided Percutaneous Nephrolithotomy?

description: <b><i>Background and Purpose:</i></b> To evaluate whether body mass index (BMI) has an impact on the outcomes of ultrasound-guided percutaneous nephrolithotomy (PCNL). <b><i>Materials and Methods:</i></b> The data of 359 patients who required PCNL at ShengJing hospital between June 2013 and July 2015 were reviewed, with the patients divided into 4 groups based on different ranges of BMI: &lt;25, 25–29.9, 30–34.9, and ≥35 kg/m<sup>2</sup>. Baseline characteristics and outcomes were compared between the groups. Multivariable logistic regressions were used to evaluate the independent contribution of BMI as a predictor of outcomes. The Modified Clavien classification system was used for reporting complications. Results were compared between the groups using the chi-square and multivariate logistic regression tests. <b><i>Results:</i></b> No significant differences were noted in the demographic data between the 4 groups. Ultrasound screening time, total operative time, and hospital stay all increased with increasing BMI. No difference was found in the complication rate, stone free rate, or need for auxiliary procedures. <b><i>Conclusion:</i></b> Obesity does not increase the incidence of complications in ultrasound-guided PCNL, and the efficacy of the technique for obese patients is similar to that for normal weight patients. The lateral decubitus position was preferred in patients with higher BMI.