cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.7704878
title: Data-driven plasma modelling: Fluorocarbon ICP data set

description: This is an open source dataset of optical emission spectra and optical images in fluorocarbon plasmas, along with associated tool logs, captured from a Oxford Intruments Plasma Technology PP100 ICP etcher. The dataset consists of Ar, O<sub>2</sub>, Ar/O<sub>2</sub>, CF<sub>4</sub>/O<sub>2</sub> and SF<sub>6</sub>/O<sub>2</sub> gas mixtures etching Si wafers. The data has been split into chunks for uploading to Zenodo, to reconstruct them: $ cat generative_model-fluorocarbon_data_set.tar.xz* &gt; generative_model-fluorocarbon_data_set.tar.xz $ tar -xvf generative_model-fluorocarbon_data_set.tar.xz You can find the code to train an autoencoder model using the optical emission spectra and optical images at our github repo, https://github.com/gregdaly/generative_modelling_for_optical_plasma_diagnostics
DOI: 10.5281/zenodo.7701916
title: Supplementary data to the article "The first larva of the cucujiform superfamily Cleroidea from the Mesozoic and its ecological implications (Coleoptera)"

description: The supplementery data to the article "The first larva of the cucujiform superfamily Cleroidea from the Mesozoic and its ecological implications (Coleoptera)" contain the 8 bit TIFF image stack obtained at the Imaging Beamline P05 (IBL) operated by the Helmholtz-Zentrum Hereon at the storage ring PETRA III (Deutsches Elektronen Synchrotron-DESY, Hamburg, Germany) using synchrotron radiation based micro-computed tomography (SRμCT). The scan of the holotype specimen of <em>Cretorhadalus constantini</em> Kolibáč & Prokop, 2023 was used for the segmentation and volume renders.
description: Scanning of the holotype specimen was supported by the DESY Block Allocation Group project "Scanning the past – Reconstructing the diversity in million years old fossil amber specimens using SRμCT" at PETRA III (Hamburg, Germany). J.K. was supported by the long-term conceptual development program for research institutions provided to the Moravian Museum by the Ministry of Culture of the Czech Republic (ref. MK000094862). The work of K.R, J.S.P. and J.P. was supported by the Grant Agency of the Czech Republic (No. 21-05216S).
DOI: 10.5281/zenodo.7701915
title: Supplementary data to the article "The first larva of the cucujiform superfamily Cleroidea from the Mesozoic and its ecological implications (Coleoptera)"

description: The supplementery data to the article "The first larva of the cucujiform superfamily Cleroidea from the Mesozoic and its ecological implications (Coleoptera)" contain the 8 bit TIFF image stack obtained at the Imaging Beamline P05 (IBL) operated by the Helmholtz-Zentrum Hereon at the storage ring PETRA III (Deutsches Elektronen Synchrotron-DESY, Hamburg, Germany) using synchrotron radiation based micro-computed tomography (SRμCT). The scan of the holotype specimen of <em>Cretorhadalus constantini</em> Kolibáč & Prokop, 2023 was used for the segmentation and volume renders.
description: Scanning of the holotype specimen was supported by the DESY Block Allocation Group project "Scanning the past – Reconstructing the diversity in million years old fossil amber specimens using SRμCT" at PETRA III (Hamburg, Germany). J.K. was supported by the long-term conceptual development program for research institutions provided to the Moravian Museum by the Ministry of Culture of the Czech Republic (ref. MK000094862). The work of K.R, J.S.P. and J.P. was supported by the Grant Agency of the Czech Republic (No. 21-05216S).
DOI: 10.5258/soton/d2557
title: Dataset in support of the Southampton doctoral thesis 'Computational Fluid-Structure Interaction of Membranes and Shells with Application to Bat Flight'

description: Dataset containing the data used in generating all the analysis in the thesis: Computational Fluid Structure Interaction of Membranes and Shells with Application to bat Flight
DOI: 10.57780/ers-07698ce
title: ERS-1/2 Radar Altimeter REAPER Sensor Geophysical Data Record - SGDR  [ERS_ALT_2S]

description: ERS-1/2 Radar Altimeter REAPER Sensor Geophysical Data Record - SGDR  [ERS_ALT_2S]
DOI: 10.23729/5622e193-6d55-463d-80f5-cb5999ef66cb
title: FIRE (The Finnish Reflection Experiment) Documentation

description: Additional documentation of FIRE (The Finnish Reflection Experiment) data sets. Includes article about research methods used, description of FIRE project, copy of the research contract, and copy of the Undertaking on the Digital Preservation of Research Data.
DOI: 10.6084/m9.figshare.21771059
title: Integrating the artificial bee colony metaheuristic with Dhouib-Matrix-TSP1 heuristic for holes drilling problems

description: In this article, an innovative hybrid optimization method is proposed based on the integration of the Artificial Bee Colony metaheuristic and the Dhouib-Matrix-TSP1 heuristic to overcome the tool path minimization problem. The proposed methodology consists firstly of providing different feasible solutions by implementing Dhouib-Matrix-TSP1 with several descriptive statistical metrics. Then, these solutions will become a part of the initial population of the Artificial Bee Colony that will perform this population in order to generate the optimal solution. To validate and compare the proposed method, several experimental instances of multi-hole making are simulated. The used dataset consists of four rectangular layouts and two circular layouts with an arrangement from 25 to 2600 holes. Results show that the proposed method outperforms the standard metaheuristics with an improvement rate between 0.24% and 9.35%. The obtained improvements concern simultaneously the minimal path length, the mean path length, and the SD of path lengths.
DOI: 10.6084/m9.figshare.21771059.v1
title: Integrating the artificial bee colony metaheuristic with Dhouib-Matrix-TSP1 heuristic for holes drilling problems

description: In this article, an innovative hybrid optimization method is proposed based on the integration of the Artificial Bee Colony metaheuristic and the Dhouib-Matrix-TSP1 heuristic to overcome the tool path minimization problem. The proposed methodology consists firstly of providing different feasible solutions by implementing Dhouib-Matrix-TSP1 with several descriptive statistical metrics. Then, these solutions will become a part of the initial population of the Artificial Bee Colony that will perform this population in order to generate the optimal solution. To validate and compare the proposed method, several experimental instances of multi-hole making are simulated. The used dataset consists of four rectangular layouts and two circular layouts with an arrangement from 25 to 2600 holes. Results show that the proposed method outperforms the standard metaheuristics with an improvement rate between 0.24% and 9.35%. The obtained improvements concern simultaneously the minimal path length, the mean path length, and the SD of path lengths.
DOI: 10.6084/m9.figshare.20223264
title: Impact of <i>ZNF804A</i> rs1344706 or <i>CACNA1C</i> rs1006737 polymorphisms on cognition in patients with severe mental disorders: A systematic review and meta-analysis

description: This systematic review and meta-analysis focussed on insights into the relationship between <i>CACNA1C</i>-rs1006737 and <i>ZNF804A</i>-rs1344706 polymorphisms and cognitive performance in schizophrenia (SCZ) spectrum and bipolar disorder (BD) and provide some contributions for clinical practice. We searched the websites databases (PubMED, PsycINFO, Web of Science, EMBASE and Cochrane Library) using eligibility and exclusion criteria to capture all potential studies, based on PICO model and according to the PRISMA. Eight articles were included in this systematic review (five referring to <i>CACNA1C</i>-rs1006737 and three related to <i>ZNF804A</i>-rs1344706 polymorphisms), with a total of 5759 participants (1751 SCZ patients, 348 BD patients, 3626 controls and 34 first-degree relatives). The results demonstrated that the pooled effect of <i>CACNA1C</i>-rs1006737 (risk difference RD = 0.08; 95% CI 0.02–0.15) was associated with altered cognitive function in patients with severe mental disorders, but not Z<i>NF804A</i>-rs1344706 polymorphism (RD = 0.19; 95% CI 0.09–0.48. The present meta-analysis provides evidence regarding slight association between <i>CACNA1C</i>-rs1006737 polymorphisms and cognitive performance in severe mental disorders, indicating that cognitive impairment in severe mental disorders associated with the <i>CACNA1C</i> rs1006737 risk variants could only be expressed when interacting with environmental exposures. This study is registered with PROSPERO, number CRD42021246726.
DOI: 10.6084/m9.figshare.20223264.v2
title: Impact of <i>ZNF804A</i> rs1344706 or <i>CACNA1C</i> rs1006737 polymorphisms on cognition in patients with severe mental disorders: A systematic review and meta-analysis

description: This systematic review and meta-analysis focussed on insights into the relationship between <i>CACNA1C</i>-rs1006737 and <i>ZNF804A</i>-rs1344706 polymorphisms and cognitive performance in schizophrenia (SCZ) spectrum and bipolar disorder (BD) and provide some contributions for clinical practice. We searched the websites databases (PubMED, PsycINFO, Web of Science, EMBASE and Cochrane Library) using eligibility and exclusion criteria to capture all potential studies, based on PICO model and according to the PRISMA. Eight articles were included in this systematic review (five referring to <i>CACNA1C</i>-rs1006737 and three related to <i>ZNF804A</i>-rs1344706 polymorphisms), with a total of 5759 participants (1751 SCZ patients, 348 BD patients, 3626 controls and 34 first-degree relatives). The results demonstrated that the pooled effect of <i>CACNA1C</i>-rs1006737 (risk difference RD = 0.08; 95% CI 0.02–0.15) was associated with altered cognitive function in patients with severe mental disorders, but not Z<i>NF804A</i>-rs1344706 polymorphism (RD = 0.19; 95% CI 0.09–0.48. The present meta-analysis provides evidence regarding slight association between <i>CACNA1C</i>-rs1006737 polymorphisms and cognitive performance in severe mental disorders, indicating that cognitive impairment in severe mental disorders associated with the <i>CACNA1C</i> rs1006737 risk variants could only be expressed when interacting with environmental exposures. This study is registered with PROSPERO, number CRD42021246726.
DOI: 10.6084/m9.figshare.20223264.v1
title: Impact of <i>ZNF804A</i> rs1344706 or <i>CACNA1C</i> rs1006737 polymorphisms on cognition in patients with severe mental disorders: a systematic review and meta-analysis.

description: <b>Objectives</b> This systematic review and meta-analysis focused on insights into the relationship between <i>CACNA1C</i>-rs1006737 and <i>ZNF804A</i>-rs1344706 polymorphisms and cognitive performance in schizophrenia (SCZ) spectrum and bipolar disorder (BD) and provide some contributions for clinical practice. <b>Methods</b>: We searched the websites databases (PubMED, PsycINFO, Web of Science, EMBASE and Cochrane Library) using eligibility and exclusion criteria to capture all potential studies, based on PICO model and according to the PRISMA. <b>Results</b>: Eight articles were included in this systematic review (five referring to <i>CACNA1C</i>-rs1006737 and three related to <i>ZNF804A</i>-rs1344706 polymorphisms), with a total of 5759 participants (1751 SCZ patients, 348 BD patients, 3626 controls and 34 first-degree relatives). The results demonstrated that the pooled effect of <i>CACNA1C</i>-rs1006737 (risk difference RD= 0.08; 95% CI 0.02 – 0.15) was associated with altered cognitive function in patients with severe mental disorders, but not Z<i>NF804A</i>-rs1344706 polymorphism (RD= 0.19; 95% CI 0.09 – 0.48. <b>Conclusion</b>: The present meta-analysis provides evidence regarding slight association between <i>CACNA1C</i>-rs1006737 polymorphisms and cognitive performance in severe mental disorders, indicating that cognitive impairment in severe mental disorders associated with the <i>CACNA1C</i> rs1006737 risk variants could only be expressed when interacting with environmental exposures. This study is registered with PROSPERO, number CRD42021246726.
DOI: 10.6084/m9.figshare.20072072
title: DNA methylation in people with anorexia nervosa: Epigenome-wide patterns in actively ill, long-term remitted, and healthy-eater women

description: Recent studies have reported altered methylation levels at disorder-relevant DNA sites in people who are ill with Anorexia Nervosa (AN) compared to findings in people with no eating disorder (ED) or in whom AN has remitted. The preceding implies state-related influences upon gene expression in people with AN. This study further examined this notion. We measured genome-wide DNA methylation in 145 women with active AN, 49 showing stable one-year remission of AN, and 64 with no ED. Comparisons revealed 205 differentially methylated sites between active and no ED groups, and 162 differentially methylated sites between active and remitted groups (<i>Q</i> &lt; 0.01). Probes tended to map onto genes relevant to psychiatric, metabolic and immune functions. Notably, several of the genes identified here as being differentially methylated in people with AN (e.g. <i>SYNJ2, PRKAG2, STAT3</i>, <i>CSGALNACT1, NEGR1</i>, <i>NR1H3</i>) have figured in previous studies on AN. Effects also associated illness chronicity and lower BMI with more pronounced DNA methylation alterations, and remission of AN with normalisation of DNA methylation. Findings corroborate earlier results suggesting reversible DNA methylation alterations in AN, and point to particular genes at which epigenetic mechanisms may act to shape AN phenomenology.
DOI: 10.6084/m9.figshare.20072072.v2
title: DNA methylation in people with anorexia nervosa: Epigenome-wide patterns in actively ill, long-term remitted, and healthy-eater women

description: Recent studies have reported altered methylation levels at disorder-relevant DNA sites in people who are ill with Anorexia Nervosa (AN) compared to findings in people with no eating disorder (ED) or in whom AN has remitted. The preceding implies state-related influences upon gene expression in people with AN. This study further examined this notion. We measured genome-wide DNA methylation in 145 women with active AN, 49 showing stable one-year remission of AN, and 64 with no ED. Comparisons revealed 205 differentially methylated sites between active and no ED groups, and 162 differentially methylated sites between active and remitted groups (<i>Q</i> &lt; 0.01). Probes tended to map onto genes relevant to psychiatric, metabolic and immune functions. Notably, several of the genes identified here as being differentially methylated in people with AN (e.g. <i>SYNJ2, PRKAG2, STAT3</i>, <i>CSGALNACT1, NEGR1</i>, <i>NR1H3</i>) have figured in previous studies on AN. Effects also associated illness chronicity and lower BMI with more pronounced DNA methylation alterations, and remission of AN with normalisation of DNA methylation. Findings corroborate earlier results suggesting reversible DNA methylation alterations in AN, and point to particular genes at which epigenetic mechanisms may act to shape AN phenomenology.
DOI: 10.6084/m9.figshare.20072072.v1
title: DNA methylation in people with Anorexia Nervosa: Epigenome-wide patterns in actively ill, long-term remitted, and healthy-eater women

description: <b>Objectives:</b> Recent studies have reported altered methylation levels at disorder-relevant DNA sites in people who are ill with Anorexia Nervosa (AN) compared to findings in people with no eating disorder (ED) or in whom AN has remitted. The preceding implies state-related influences upon gene expression in people with AN. The present study further examined this notion. <b>Methods:</b> We measured genome-wide DNA methylation in 145 women with active AN, 49 showing stable one-year remission of AN, and 64 with no ED. <b>Results:</b> Comparisons revealed 205 differentially methylated sites between active and no ED groups, and 162 differentially methylated sites between active and remitted groups (<i>Q</i> &lt; 0.01). Probes tended to map onto genes relevant to psychiatric, metabolic and immune functions. Notably, several of the genes identified here as being differentially methylated in people with AN (e.g., <i>SYNJ2, PRKAG2, STAT3</i>, <i>CSGALNACT1, NEGR1</i>, <i>NR1H3</i>) have figured in previous studies on AN. Effects also associated illness chronicity and lower BMI with more pronounced DNA methylation alterations, and remission of AN with normalization of DNA methylation. <b>Conclusions:</b> Findings corroborate earlier results suggesting reversible DNA methylation alterations in AN, and point to particular genes at which epigenetic mechanisms may act to shape AN phenomenology.
DOI: 10.6084/m9.figshare.21286119.v1
title: Use of the emergency food system among food insecure, low-income households in the United States 2015 to 2020

description: The emergency food system (EFS) is a critical part of the United States’ social safety net. Using 2015–2020 Current Population Survey Food Security Supplement data, we identified trends in EFS use among food insecure, low-income households by estimating the probability of EFS use adjusting for demographics using multivariable logistic regression. From 2015 to 2019, between 31.0% and 34.4% of households received emergency food, while 42.4% did in 2020. EFS use did not increase in 2020 compared to prior years for older adults and non-metropolitan households. Targeted outreach should be used to expand the reach of this resource to underserved and marginalized populations.”
DOI: 10.6084/m9.figshare.16863951
title: Nutrition Quality of Food Drive Donations Is Mediocre

description: This study assessed nutritional quality of foods donated through large-scale food drives. A cross-sectional, photo-based design was used. Donated foods were categorized according to Healthy Eating Research Nutrition Guidelines for Ranking Charitable Food (HER). Means of sodium, saturated fat, and sugar were calculated and compared with HER nutrient guidelines for 4,484 foods. Only 19.4% of donations were categorized as good nutritional quality. No significant differences existed between food drive events. The association between food insecurity, poor diet quality, and poor health outcomes may be mediated by unhealthy foods donated through food drives. Strategies to facilitate healthy food availability are essential.
DOI: 10.6084/m9.figshare.16863951.v1
title: Nutrition Quality of Food Drive Donations Is Mediocre

description: This study assessed nutritional quality of foods donated through large-scale food drives. A cross-sectional, photo-based design was used. Donated foods were categorized according to Healthy Eating Research Nutrition Guidelines for Ranking Charitable Food (HER). Means of sodium, saturated fat, and sugar were calculated and compared with HER nutrient guidelines for 4,484 foods. Only 19.4% of donations were categorized as good nutritional quality. No significant differences existed between food drive events. The association between food insecurity, poor diet quality, and poor health outcomes may be mediated by unhealthy foods donated through food drives. Strategies to facilitate healthy food availability are essential.
DOI: 10.6084/m9.figshare.21286119
title: Use of the emergency food system among food insecure, low-income households in the United States 2015 to 2020

description: The emergency food system (EFS) is a critical part of the United States’ social safety net. Using 2015–2020 Current Population Survey Food Security Supplement data, we identified trends in EFS use among food insecure, low-income households by estimating the probability of EFS use adjusting for demographics using multivariable logistic regression. From 2015 to 2019, between 31.0% and 34.4% of households received emergency food, while 42.4% did in 2020. EFS use did not increase in 2020 compared to prior years for older adults and non-metropolitan households. Targeted outreach should be used to expand the reach of this resource to underserved and marginalized populations.”
DOI: 10.6084/m9.figshare.22249543
title: Secondary beam connection bolt quality control point torque data table1-10

description: To further illustrate the application of the Markov method in quality control of steel structure construction, this study takes the torque of common bolts during the splicing process of a certain engineering steel structure as an example. A total of 10 sets of 31 data were measured from a quality data control point at the secondary beam connection on the construction site. Each set of data is marked as "Data No.1 to Data No.31" according to the time order of data collection. The bolt specification is 10.9S, M24*65, and C class.
DOI: 10.6084/m9.figshare.22249543.v1
title: Secondary beam connection bolt quality control point torque data table1-10

description: To further illustrate the application of the Markov method in quality control of steel structure construction, this study takes the torque of common bolts during the splicing process of a certain engineering steel structure as an example. A total of 10 sets of 31 data were measured from a quality data control point at the secondary beam connection on the construction site. Each set of data is marked as "Data No.1 to Data No.31" according to the time order of data collection. The bolt specification is 10.9S, M24*65, and C class.
DOI: 10.34810/data126/2
title: Readme.txt

description: :unav
DOI: 10.26030/9k6w-4c28
title: Rodent Research-3-CASIS: Mouse liver transcriptomic, proteomic, epigenomic and histology data

description: The Rodent Research-3 (RR-3) mission was sponsored by the pharmaceutical company Eli Lilly and Co. and the Center for the Advancement of Science in Space to study the effectiveness of a potential countermeasure for the loss of muscle and bone mass that occurs during spaceflight. Twenty BALB/c, 12-weeks old female mice (ten controls and ten treated) were flown to the ISS and housed in the Rodent Habitat for 39-42 days. Twenty mice of similar age, sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. Basal controls were housed in standard vivarium cages. Spaceflight, ground controls and basal groups had blood collected, then were euthanized, had one hind limb removed, and finally whole carcasses were stored at -80 C until dissection. All mice in this data set received only the control/sham injection.
DOI: 10.15468/dl.zhv6sh
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Jalla dumosa (Linnaeus, 1758)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 628 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082525-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2q5tms
title: Occurrence Download

description: A dataset containing 68 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 }
 ]
 },
 "SpeciesKey is Callosobruchus maculatus (Fabricius, 1775)",
 "Year is greater than or equal to 2004",
 "Year is less than or equal to 2023"
 ]
}

 The dataset includes 68 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0082526-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.