cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.4btv2k
title: Occurrence Download

description: A dataset containing 298 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ilex crenata",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 298 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007338-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.srw6nj
title: Occurrence Download

description: A dataset containing 24978 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1941"
 ]
}

 The dataset includes 24978 records from 92 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007340-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17180707
title: Pangenome Mutation-Annotated Networks

description: Pangenomics is an emerging field that uses a collection of genomes of a species instead of a single reference genome to overcome reference bias and study the within-species genetic diversity. Future pangenomics applications will require analyzing large and ever-growing collections of genomes. Therefore, the choice of data representation is a key determinant of the scope, as well as the computational and memory performance of pangenomic analyses. Current pangenome formats, while capable of storing genetic variations across multiple genomes, fail to capture the shared evolutionary and mutational histories among them, thereby limiting their applications. They are also inefficient for storage, and therefore face significant scaling challenges. In this manuscript, we propose PanMAN, a novel data structure that is information-wise richer than all existing pangenome formats – in addition to representing the alignment and genetic variation in a collection of genomes, PanMAN represents the shared mutational and evolutionary histories inferred between those genomes. By using “evolutionary compression”, PanMAN achieves 5.2 to 680-fold compression over other variation-preserving pangenomic formats. PanMAN's relative performance generally improves with larger datasets and it is compatible with any method for inferring phylogenies and ancestral nucleotide states. Using SARS-CoV-2 as a case study, we show that PanMAN offers a detailed and accurate portrayal of the pathogen's evolutionary and mutational history, facilitating the discovery of new biological insights. We also present panmanUtils, a software toolkit that supports common pangenomic analyses and makes PanMANs interoperable with existing tools and formats. PanMANs are poised to enhance the scale, speed, resolution, and overall scope of pangenomic analyses and data sharing.
DOI: 10.15468/dl.tq7guk
title: Occurrence Download

description: A dataset containing 267033 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Occurrence evidence",
 "Country is Chinese Taipei",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 267033 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007327-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6rx2jd
title: Occurrence Download

description: A dataset containing 48 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Biswarea tonglensis"
 ]
}

 The dataset includes 48 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007341-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w42pqx
title: Occurrence Download

description: A dataset containing 762 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Sedum lanceolatum",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 762 records from 69 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007343-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.34740/kaggle/dsv/13142015
title: Peer-to-Peer Boliviano (BOB) Exchange Data
DOI: 10.15468/dl.rfkn34
title: Occurrence Download

description: A dataset containing 76 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ilex altaclerensis",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 76 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007344-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ttqz62
title: Occurrence Download

description: A dataset containing 15569 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1942"
 ]
}

 The dataset includes 15569 records from 91 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007345-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.17180525
title: ShapeGWAS Caudate Phase1to5 Data

description: GWAS summary statistics, SNP info, and numpy arrays for Caudate phase1to5.
DOI: 10.15468/dl.azjjhn
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ilex meserveae",
 "Country is Belgium",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007348-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nf85by
title: Occurrence Download

description: A dataset containing 277 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Sedum stenopetalum",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 277 records from 49 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007346-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hbv3ap
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ilex meserveae",
 "Country is Norway",
 "HasCoordinate is true"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007349-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zqehud
title: Occurrence Download

description: A dataset containing 184822 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aix galericulata",
 "Year 2015-2025"
 ]
}

 The dataset includes 184822 records from 421 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007242-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xfmaja
title: Occurrence Download

description: A dataset containing 338 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Human Observation",
 "Country is Mexico",
 "OccurrenceStatus is Present",
 "TaxonKey is Coendou mexicanus"
 ]
}

 The dataset includes 338 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007350-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.gxsefe
title: Occurrence Download

description: A dataset containing 18797 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Australia",
 "HasCoordinate is true",
 "Year is 1943"
 ]
}

 The dataset includes 18797 records from 90 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007351-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ywyngs
title: Occurrence Download

description: A dataset containing 353 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen)"
 ]
 }
 },
 "TaxonKey is Selaginella densa",
 "Year is less than or equal to 2000",
 "Year is greater than or equal to 1970",
 {
 "or" : [
 {
 "not" : {
 "EstablishmentMeans" : [
 "is one of (MANAGED, INTRODUCED)"
 ]
 }
 },
 "EstablishmentMeans is null"
 ]
 },
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 1000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 353 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007352-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pc3z4z
title: Occurrence Download

description: A dataset containing 230580 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Chelonia mydas",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2025",
 "DecimalLatitude is greater than or equal to -90.0",
 "DecimalLatitude is less than or equal to 90.0",
 "DecimalLongitude is greater than or equal to -180.0",
 "DecimalLongitude is less than or equal to 180.0",
 "HasCoordinate is true"
 ]
}

 The dataset includes 230580 records from 318 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007308-250920141307145/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ftmdq8
title: Occurrence Download

description: A dataset containing 275 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is North America",
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Eriobotrya japonica (Thunb.) Lindl."
 ]
}

 The dataset includes 275 records from 38 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005406-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.14773918
title: Dataset VNT50 - Second booster dose improves antibody neutralization against BA.1, BA.5 and BQ.1.1 in individuals previously immunized with CoronaVac plus BNT162B2 booster protocol

description: Results from viral neutralization assay in adults vaccinated with 2 booster doses, after primary immunization with CoronaVac, against SARS-CoV-2 Omicron subvariants BA.1, BA.5 and BQ.1.1.
DOI: 10.5281/zenodo.14773919
title: Dataset VNT50 - Second booster dose improves antibody neutralization against BA.1, BA.5 and BQ.1.1 in individuals previously immunized with CoronaVac plus BNT162B2 booster protocol

description: Results from viral neutralization assay in adults vaccinated with 2 booster doses, after primary immunization with CoronaVac, against SARS-CoV-2 Omicron subvariants BA.1, BA.5 and BQ.1.1.
DOI: 10.5281/zenodo.13653305
title: AOD and  AE from GAW-PFR Station  Ny-Aalesund (NYA)

description: Quality assured (QA) aerosol optical depth, Ångström exponent and turbidity coefficient of the GAW-PFR station Ny-Ålesund (NYA) (78.9N, 11.9E,17 m) of the year 2023.

 

Data are in MATLAB format including the following tables:



Daily: Daily mean of QA data

Minute: QA data at the maximum time resolution of the PFR instrument


 

Acknowledgements:  

NILU-Station PI : Kerstin Stebel 

Operating Engineers Sverdrupstasjonen Ny-Ålesund:  Elias Sundby Aukan, Lars Erik Sørgård

NILU :  Dorothea Schulze
DOI: 10.5281/zenodo.14708156
title: WORCC-PMOD/WRC quality assured aerosol optical depth and Ångström exponent for Ny-Ålesund GAW-PFR station (2002- 2023)

description: Aerosol optical depth (AOD) measurements have been performed within the frame of Global Atmospheric Watch Precision Filter Radiometer (GAW-PFR) network in Ny-Ålesund (79N, 11E) since 2002. The measurements are performed from March to October, with PFR (PrecisionFilterRadiometer) instruments provided by Physikalisch-Meteorologisches Observatorium Davos, World Radiation Center (PMOD/WRC). The solar tracker and infrastructure are provided by provided by NILU (Norsk institutt for luftforskning) in collaboration with the Norwegian Polar Institute.

PFR manufactured by PMOD/WRC is a temperature stabilized instrument at 20o C equipped with four narrow band interference filters with nominal centroid wavelengths 368 nm, 412 nm, 500 nm and 862 nm and bandpass (fullwidth half maximum) 4 nm for 368 nm channel and 5 nm for the rest. The instrument is calibrated on a yearly basis against the WMO-AOD reference (GAWPFR-TRIAD) at PMOD/WRC during the polar winter. The operation is done remotely by PMOD/WRC with the installation and onsite maintenance (cleaning, alignment adjustments) done by personnel of Norwegian Polar Institute and NILU in collaboration with PMOD/WRC.

The processing and quality assurance of the data is done following the protocols of World Optical depth Research and Calibration Center (WORCC, PMOD/WRC) (Kazadzis, et. al., 2018), and the data are submitted to the WDCA database (EBAS-NILU) as hourly mean AOD and AE values. This dataset contains high-resolution data (1 min) and daily mean values cloud screened and quality assured since 2002. The provided Ångström exponent is retrieved from the 4 wavelengths.

zenodo version 1 (02-May-2002 - 30-Sep-2023), format: mat

zenodo version 2 (02-May-2002 - 30-Sep-2023), format: mat and  csv

 

Contributions:

KN: Calibration, operation, and processing since 2014, WORCC quality assurance protocols, quality assurance of the presented dataset

WC: calibration, operation, and processing 2002- 2014

KS: consulting on WORCC quality assurance protocols

SK: principal investigator of hosting institute NILU

NS: operation and processing 2005- 2012

 

Acknowledgement: 

Special thanks to the personnel of the Norwegian Polar Institute at Ny-Ålesund for all the valuable technical support.
DOI: 10.5281/zenodo.14708157
title: WORCC-PMOD/WRC quality assured aerosol optical depth and Ångström exponent for Ny-Ålesund GAW-PFR station (2002- 2023)

description: Aerosol optical depth (AOD) measurements have been performed within the frame of Global Atmospheric Watch Precision Filter Radiometer (GAW-PFR) network in Ny-Ålesund (79N, 11E) since 2002. The measurements are performed from March to October, with PFR (PrecisionFilterRadiometer) instruments provided by Physikalisch-Meteorologisches Observatorium Davos, World Radiation Center (PMOD/WRC). The solar tracker and infrastructure are provided by provided by NILU (Norsk institutt for luftforskning) in collaboration with the Norwegian Polar Institute.

PFR manufactured by PMOD/WRC is a temperature stabilized instrument at 20o C equipped with four narrow band interference filters with nominal centroid wavelengths 368 nm, 412 nm, 500 nm and 862 nm and bandpass (fullwidth half maximum) 4 nm for 368 nm channel and 5 nm for the rest. The instrument is calibrated on a yearly basis against the WMO-AOD reference (GAWPFR-TRIAD) at PMOD/WRC during the polar winter. The operation is done remotely by PMOD/WRC with the installation and onsite maintenance (cleaning, alignment adjustments) done by personnel of Norwegian Polar Institute and NILU in collaboration with PMOD/WRC.

The processing and quality assurance of the data is done following the protocols of World Optical depth Research and Calibration Center (WORCC, PMOD/WRC) (Kazadzis, et. al., 2018), and the data are submitted to the WDCA database (EBAS-NILU) as hourly mean AOD and AE values. This dataset contains high-resolution data (1 min) and daily mean values cloud screened and quality assured since 2002. The provided Ångström exponent is retrieved from the 4 wavelengths.

version: v1 (02-May-2002 - 30-Sep-2023)

 

Contributions:

KN: Calibration, operation, and processing since 2014, WORCC quality assurance protocols, quality assurance of the presented dataset

WC: calibration, operation, and processing 2002- 2014

KS: consulting on WORCC quality assurance protocols

SK: principal investigator of hosting institute NILU

NS: operation and processing 2005- 2012

 

Acknowledgement: 

Special thanks to the personnel of the Norwegian Polar Institute at Ny-Ålesund for all the valuable technical support.
DOI: 10.5281/zenodo.14773934
title: WORCC-PMOD/WRC quality assured aerosol optical depth and Ångström exponent for Ny-Ålesund GAW-PFR station (2002- 2023)

description: Aerosol optical depth (AOD) measurements have been performed within the frame of Global Atmospheric Watch Precision Filter Radiometer (GAW-PFR) network in Ny-Ålesund (79N, 11E) since 2002. The measurements are performed from March to October, with PFR (PrecisionFilterRadiometer) instruments provided by Physikalisch-Meteorologisches Observatorium Davos, World Radiation Center (PMOD/WRC). The solar tracker and infrastructure are provided by provided by NILU (Norsk institutt for luftforskning) in collaboration with the Norwegian Polar Institute.

PFR manufactured by PMOD/WRC is a temperature stabilized instrument at 20o C equipped with four narrow band interference filters with nominal centroid wavelengths 368 nm, 412 nm, 500 nm and 862 nm and bandpass (fullwidth half maximum) 4 nm for 368 nm channel and 5 nm for the rest. The instrument is calibrated on a yearly basis against the WMO-AOD reference (GAWPFR-TRIAD) at PMOD/WRC during the polar winter. The operation is done remotely by PMOD/WRC with the installation and onsite maintenance (cleaning, alignment adjustments) done by personnel of Norwegian Polar Institute and NILU in collaboration with PMOD/WRC.

The processing and quality assurance of the data is done following the protocols of World Optical depth Research and Calibration Center (WORCC, PMOD/WRC) (Kazadzis, et. al., 2018), and the data are submitted to the WDCA database (EBAS-NILU) as hourly mean AOD and AE values. This dataset contains high-resolution data (1 min) and daily mean values cloud screened and quality assured since 2002. The provided Ångström exponent is retrieved from the 4 wavelengths.

zenodo version 1 (02-May-2002 - 30-Sep-2023), format: mat

zenodo version 2 (02-May-2002 - 30-Sep-2023), format: mat and  csv

 

Contributions:

KN: Calibration, operation, and processing since 2014, WORCC quality assurance protocols, quality assurance of the presented dataset

WC: calibration, operation, and processing 2002- 2014

KS: consulting on WORCC quality assurance protocols

SK: principal investigator of hosting institute NILU

NS: operation and processing 2005- 2012

 

Acknowledgement: 

Special thanks to the personnel of the Norwegian Polar Institute at Ny-Ålesund for all the valuable technical support.
DOI: 10.5281/zenodo.7191072
title: WORCC-PMOD/WRC quality assured aerosol optical depth and Ångström exponent for Ny-Ålesund GAW station (2002- present)

description: WORCC-PMOD/WRC quality assured aerosol optical depth and Ångström exponent for Ny-Ålesund GAW station (2002- present) Aerosol optical depth (AOD) measurements have been performed within the frame of Global Atmospheric Watch Precision Filter Radiometer (GAW-PFR) network in Ny-Ålesund (79N,11E) since 2002. The measurements are performed from March to October, with PFR (PrecisionFilterRadiometer) instruments provided by Physikalisch-Meteorologisches Observatorium Davos, World Radiation Center (PMOD/WRC). The solar tracker and infrastructure are provided by provided by NILU(Norsk institutt for luftforskning) in collaboration with the Norwegian Polar Institute. PFR manufactured by PMOD/WRC is a temperature stabilized instrument at 20<sup>o</sup> C equipped with four narrow band interference filters with nominal centroid wavelengths 368 nm, 412 nm, 500 nm and 862 nm and bandpass (fullwidth half maximum) 4 nm for 368 nm channel and 5 nm for the rest. The instrument is calibrated in yearly bases against the WMO-AOD reference at PMOD/WRC during the polar winter. The operation is done remotely by PMOD/WRC with the installation and onsite maintenance (cleaning, alignment adjustments) done by personnel of Norwegian Polar Institute and NILU in collaboration with PMOD/WRC. The processing and quality assurance of the data is done following the protocols of World Optical depth Research and Calibration Center (WORCC, PMOD/WRC) (2018), and the data are submitted to the WDCA database (EBAS-NILU) as hourly mean AOD and AE values. This dataset contains the high-resolution data (1 min) cloud screened and quality assured since 2002. The provided Ångström exponent is retrieved from the 4 wavelengths. SUN_PFR_AOD_AE_V1.0.dat : AOD and AE for the period 2002-2021 Lunar_PFR_AOD_AE_V1.0.dat : AOD and AE for the period 2018-2021 KN: Calibration, operation, and processing since 2014, WORCC quality assurance protocols, quality assurance of the presented dataset KS: , WORCC quality assurance protocols, consulting on quality assurance of the presented dataset WC: calibration, operation, and processing 2002- 2014 NS: operation and processing 2005- 2012 HGH: principal investigator of hosting institute NILU SK: principal investigator of hosting institute NILU Acknowledgement: Special thanks the personnel of the Norwegian Polar Institute at Ny-Ålesund for all valuable the technical support for the solar and lunar measurements. 1. Kazadzis, S., Kouremeti, N., Nyeki, S.<em>, et al.</em> (2018) The World Optical Depth Research and Calibration Center (WORCC) quality assurance and quality control of GAW-PFR AOD measurements 10.5194/gi-7-39-2018 https://gi.copernicus.org/articles/7/39/2018/
DOI: 10.15468/dl.4782wh
title: Occurrence Download

description: A dataset containing 23 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Coffea bernardiniana J.-F.Leroy"
 ]
}

 The dataset includes 23 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005407-250127130748423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.