cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/3481
title: SUPERSEDED - A study of Novec 649 fluid jets injected into sub-, trans- and super-critical thermodynamic conditions using planar laser induced fluorescence and elastic light scattering diagnostics

description: ## This item has been replaced by the one which can be found at https://doi.org/10.7488/ds/3794 ##. This dataset contains 5 folders that include relevant data to a study done on transcritical fluid jets within the Institute for Multiscale Thermofluids at the University of Edinburgh. Information provided varies from image and video files to tabulated data and MatLab scripts. A description of the information provided in each zipped folder has been added to facilitate finding relevant data.
DOI: 10.7488/ds/3773
title: Stretchable e-skin and transformer enable high-resolution morphological reconstruction for soft robots
title: Stretchable e-skin and transformer enable ultra-high proprioceptive geometry resolution morphological reconstruction for soft robots

description: The zip file includes data and code for replicate the results of 'Stretchable e-skin and transformer enable ultra-high proprioceptive geometry resolution morphological reconstruction for soft robots'. [This title was ultimately changed to "Stretchable e-skin and transformer enable high-resolution morphological reconstruction for soft robots" during the publication process - curator's note 6 January 2023.] ## Manuscript abstract ## Many robotic tasks require knowledge of the exact 3D robot geometry. However, this remains extremely challenging in soft robotics because of the infinite degrees of freedom of soft bodies deriving from their continuum characteristics. Previous studies have only been able to achieve low proprioceptive geometry resolution (PGR), making it suffer from loss of geometric details (e.g. local deformation and surface information) and limited applicability. Here, we report an intelligent stretchable capacitive e-skin to endow soft robots with ultra-high PGR (=3,900) bodily awareness. We demonstrate that our e-skin can finely capture a wide range of complex 3D deformations across the entire soft body through multi-position capacitance measurements. The e-skin signals can be directly translated to high-density point clouds portraying the complete geometry via a deep architecture based on transformer. This ultra-high PGR proprioception system providing millimeter-scale (2.322 ± 0.687 mm error on a 20 x 20 x 200 mm soft robot), local and global geometry reconstruction has the potential to assist in solving fundamental problems in soft robotics, such as precise closed-loop control and accurate digital twin modelling.
DOI: 10.7488/ds/3776
title: Dataset: gender representation at the Royal College of Radiologists' Annual Scientific Meeting

description: Deidentified dataset extracted from Royal College of Radiologists' Annual Scientific Conference programmes on genders of presenters and types of presentations.
DOI: 10.7488/ds/3766
title: SUPERSEDED - Additional file for 'Efficient comparison of evolutionary trees during phylogenetic reconstruction'

description: ## This item has been replaced by the one which can be found at https://datashare.ed.ac.uk/handle/10283/4798 ##. Supplementary data for Guscott JC, Kim CS, Pinheiro M, Wood C, Winn MD, Guntoro F, Meagher TR, Barker D, 'Efficient comparison of evolutionary trees during phylogenetic reconstruction' (in prep.). For further details, see 'README.txt' within the zipfile.
description: See 'README.txt' within the zipfile.
DOI: 10.7488/ds/3768
title: Supplementary text and multiple sequence alignments from 'On simulated annealing phase transitions in phylogeny reconstruction'

description: The supplementary data files of Stobl & Barker (2016, Molecular Phylogenetics and Evolution 101:46-55; doi:10.1016/j.ympev.2016.05.001) are provided here. We also provide the multiple sequence alignments in an additional sequence file format (FASTA format).
description: See 'README.txt' file within the zipfile.
DOI: 10.7488/ds/3064
title: Growth-dependent heterogeneity in the DNA damage response in Escherichia coli
title: Growth-dependent heterogeneity in the SOS response

description: In natural environments bacteria are frequently exposed to sub-lethal levels of DNA damage which leads to the induction of a stress response (the SOS response in Escherichia coli). Natural environments also vary in nutrient availability, resulting in distinct physiological changes in bacteria which may have direct implications on their capacity to repair their chromosomes. Here, we evaluated the impact of varying the nutrient availability on the expression of the SOS response induced by chronic sub-lethal DNA damage in E. coli. The expression of the SOS regulon was found to be highly heterogeneous at the single-cell level in all growth conditions. Surprisingly, we observed a larger fraction of high SOS-induced cells in slow growth as compared with fast growth, despite a higher rate of SOS induction in fast growth. This counter-intuitive result can be explained by the dynamic balance between the rate of SOS induction and the division rates of cells exposed to DNA damage. Taken together, our data illustrates how cell division and physiology come together to produce growth-dependent heterogeneity in the DNA damage response. This dataset consists of raw image files in support of the accompanying article. For further details, see 'ReadMe.txt'.
description: Here, two datasets have been collected in order to quantify the effect of varying the growth rate (modulated by changing the nutrient quality) on the SOS response in Escherichia coli K-12 MG1655. The first dataset (Population_Snapshot.zip) consists of snapshot images taken for cells mounted on agar-pads after being grown in different conditions. The second dataset (MotherMachine_Timelapse.zip) consists of timelapse images of cells grown in the mother machine microfluidics device under different conditions. Apart from the wild type (WT) strain, several derivative strains were also used, and these are summarised below. Of these, the "2-pal" strain was focussed on as it constitutes a reliable and controlled source of chronic, replication-dependent DNA damage. Data was collected for three growth conditions separated by growth medium corresponding to slow, medium, and fast growth rates. Some datasets additionally include ciprofloxacin exposure as an alternative DNA-damaging agent. Images were captured in brightfield, mCherry (red), and mGFP (green) fluorescence channels. The mKate2 fluorescent marker is linked to constitutive gene expression (Ptet01-mKate2) and was used for cell segmentation; while mGFP fluorescent marker is linked to SOS regulon expression (PsulA-mGFP). For further details, see 'ReadMe.txt'.
DOI: 10.7488/ds/3480
title: Knudsen minimum disappearance in molecular-confined flows

description: This dataset file contains an Excel spreadsheet, which stores the data for each figure in the manuscript. Data consists mainly of measured self diffusion, mass flow rate and slip coefficient results for gases confined in cylindrical pores with varying confinement, and density (or Knudsen number) obtained from event driven molecular dynamics simulations.
DOI: 10.7488/ds/3506
title: Researching Widening Participation (WP) in Engineering - PTAS Project Data

description: This data set is a record of the survey carried out as part of the PTAS project titled researching widening participation in Engineering.
DOI: 10.7488/ds/3778
title: Data for Computers and Geotechnics paper "A granular energy-controlled boundary condition for discrete element simulations of granular flows on erodible surfaces"

description: Simulations were performed with a opensource DEM code (LAMMPS https://www.lammps.org/#gsc.tab=0). Relevant data was dumped during runtime by the code and/or simulation data was postprocessed with MATLAB after the simulations. Figures of the above paper were made with MATLAB. The MATLAB scripts to create the figures of above paper (and resulting .fig and .pdf files) are also provided in this data archive. In case it should be somehow relevant: All simulations were performed on a Scientific Linux OS and postprocessing are conducted on a Windows10 laptop.
DOI: 10.7488/ds/3770
title: Pax6 Developmental Synaptome Atlas
title: Developmental disruption and restoration of brain synaptome architecture in the murine Pax6 neurodevelopmental disease model

description: Neurodevelopmental disorders of genetic origin delay the acquisition of normal abilities and cause disabling phenotypes. Nevertheless, spontaneous attenuation and even complete amelioration of symptoms in early childhood and adolescence can occur in many disorders, suggesting that brain circuits possess an intrinsic capacity to overcome the deficits arising from some germline mutations. We examined the molecular composition of almost a trillion excitatory synapses on a brain-wide scale between birth and adulthood in mice carrying a mutation in the homeobox transcription factor Pax6, a neurodevelopmental disorder model. Pax6 haploinsufficiency had no impact on total synapse number at any age. By contrast, the molecular composition of excitatory synapses, the postnatal expansion of synapse diversity and the acquisition of normal synaptome architecture were delayed in all brain regions, interfering with networks and electrophysiological simulations of cognitive functions. Specific excitatory synapse types and subtypes were affected in two key developmental age-windows. These phenotypes were reversed within 2-3 weeks of onset, restoring synapse diversity and synaptome architecture to the normal developmental trajectory. Synapse subtypes with rapid protein turnover mediated the synaptome remodeling. This brain-wide capacity for remodeling of synapse molecular composition to recover and maintain the developmental trajectory of synaptome architecture may help confer resilience to neurodevelopmental genetic disorders.
DOI: 10.7488/ds/3086
title: Mozambique friction surface

description: The friction (cost allocation/effort) surface was assembled using three primary input datasets on land surface characteristics that help or hinder travel speeds: land cover, roads and topography. Landcover data were from the ESA CCI Landcover map for Africa 2016, roads data were merged from Open-Street Map (OSM) and the MapwithAi project and topography was taken from the SRTM Digital Elevation Model. The costs for travel consider walking/pedestrian travel in this data, but the software is supplied with an easy to change set of travel speeds so they can be adapted easily to consider travel speeds reflecting motorised transportation use. We have reduced the walking speeds to reflect the fact that adults walking with children move approximately 22% slower. There are two friction surfaces provided, the first defines open water as a barrier to travel and so the speed allocated to this landcover is NA. The second defines open water with an associated speed (1 km/hr). To create a walking speed array, first the road walking speeds were used and then missing values were filled with landcover walking speed values. This walking speed array was multiplied by the slope impact grid. The speed for each cell was converted from kilometers per hour to meters per second. Finally, the time (in seconds) to walk across each cell was calculated. The outputs are 20-m spatial resolution geotiffs indicating the time to walk across each cell. They are subsequently used in the least cost path analysis to estimate travel time to the nearest health facilities. However,these friction surfaces can be used by others to estimate travel speed to other destinations in a GIS.
description: cost_surface_Moz_ALL.tif - friction surface with water masked as a travel option; cost_surface_water_Moz_ALL.tif - friction surface with water assigned a travel speed of 1 km/hr.
DOI: 10.7488/ds/3774
title: Neuronal signature of spatial decision-making during navigation by freely moving rats by using calcium imaging

description: See the file "dataset_description.txt". Associated publication: Gobbo, F., Mitchell-Heggs, R., Tse, D., Al-Omrani, M., Spooner, P., Shultz, S. R., & Morris, R. (2022). Neuronal signature of spatial decision-making during navigation by freely moving rats using calcium imaging. Proceedings of the National Academy of Sciences, 119(44), [e2212152119]. https://doi.org/10.1073/pnas.2212152119
DOI: 10.7488/ds/3767
title: The decline of local anchors

description: This data sheet accompanies two submitted publications: "The Pentaset" and "The decline of local anchoring: A quantitative investigation". Funded by NWO, the Netherlands Organization for Scientific Research; grant no. 360-70-370.
DOI: 10.7488/ds/3146
title: SUPERSEDED - Views on sharing mental and physical health data among people with and without experience of mental illness
title: Satisfaction with NHS mental and physical health services in the UK

description: This dataset contains responses from an online survey of 2187 participants primarily located in the UK. All participants stated that they had used the UK National Health Service (NHS) at some time in their lives. The data were collected between December 2018 and August 2019. Participants' views on data sharing - this dataset contains information about people's willingness to share mental and physical health data for research purposes. It also includes information on willingness to share other types of data, such as financial information. The dataset includes participants' responses to questions relating to mental health data sharing, including the trustworthiness of organisations which use such data, how much the presence of different governance measures (such as deidentification, opt-out, etc.) would alter their views, and whether they would be less likely to access NHS mental health services if they knew their data might be shared with researchers. Participants' satisfaction and interaction with UK mental and physical health services - the dataset includes information regarding participants' views on and interaction with NHS services. This includes ratings of satisfaction at first contact and in the previous 12 months, frequency of use, and type of treatment received. Information about participants - the dataset includes information about participants' mental and physical health, including whether or not they have experience with specific mental health conditions, and how they would rate their mental and physical health at the time of the survey. There is also basic demographic information about the participants (e.g. age, gender, location etc.). ## This item has been replaced by the one which can be found at https://hdl.handle.net/10283/4467 ##
description: Dataset_files.txt - information relating to the documents Views on sharing mental and physical health data among people with and without experience of mental illness.xlsx - dataset and data dictionary Open access version of survey.pdf - copy of the survey that was used to collect this dataset
DOI: 10.7488/ds/3194
title: BayesR+ EWAS - Genome and epigenome wide studies of plasma protein biomarkers for Alzheimer's disease implicate TBCA and TREM2 in disease risk

description: This dataset represents one of two datasets that correspond to the study: "Genome and epigenome wide studies of plasma protein biomarkers for Alzheimer's disease implicate TBCA and TREM2 in disease risk". The datasets represent genome-wide and epigenome-wide association studies (GWAS and EWAS) on the same set of 308 SOMAmers associated with Alzheimer's disease in the literature. This dataset represents the EWAS. EWAS were performed by Bayesian penalised regression through BayesR+ software. Analyses were performed using data from volunteers within the STRADL study and Generation Scotland.
DOI: 10.7488/ds/3151
title: Data set for " CNN-aided Flooding Prognostic in Packed Column using Electrical Capacitance Tomography."

description: A dataset is presented for Flooding Prognostic in Packed Column using CNN-aided Electrical Capacitance Tomography (ECT). Numeric data containing measurement of ECT capacitance, pressure drop, liquid hold-up profiles. The ECT system used in this work includes sensors, data acquisition system and a computer with imaging software. The frame rate of the ECT system is up to 714 frames per second. The pressure inside the bed is recorded using pressure meters and data loggers, the pressure meters are placed on the capture column at the top and bottom of the column. The liquid hold-up inside the bed is derived from level meter measurements. We include data of ECT capacitance, pressure and liquid hold-up during the whole progress. The proposed CNN aided ECT accurately predicts the local liquid hold-up and enables the earliest detection of loading point at the bottom of the packed column and warning of flooding point at the top of the packed column, and therefore is highly suitable for flooding prognostic. This dataset could be used to accurate measurement of loading point and flooding point, and its application to flooding prognostic is significant to maximum the packed column mass transfer efficiency. Data supporting Chen et al (prepare to submission).
DOI: 10.7488/ds/3135
title: Conservation translocations from the ‘Global Reintroduction Perspectives’ series (2008-2018): metadata and self-reported mortality, ill-health or reproductive problems

description: This dataset comprises information extracted from case studies of animal and plant conservation translocation published in the first six volumes (2008-2018) of the IUCN/SSC's 'Global Reintroduction Perspectives' series. It includes: project metadata; summary project methods; self-reported information relating to any mortality, ill-health or reproductive compromise; and any health management practices mentioned in the case studies. The data are summarised in an accompanying data article (Beckmann & Soorae. 2022. Conservation translocations from the ‘Global Reintroduction Perspectives’ series: Disease and other biological problems. http://doi.org/10.1002/2688-8319.12163) ... and have contributed to a review of health and related outcomes in conservation translocations (Beckmann et al. 2022. Wildlife health outcomes and opportunities in conservation translocations. https://doi.org/10.1002/2688-8319.12164).
DOI: 10.7488/ds/3149
title: Raw Force-Deformation and Volumetric data for paper "Influence of the Poisson effect on the stress dependence of the elastic moduli of soil"

description: This dataset includes the raw data for the isotropic sphere compressions as used in the paper "Influence of the Poisson effect on the stress dependence of the elastic moduli of soil" by Stephanos Constandinou and Kevin Hanley (https://doi.org/10.1680/jgele.21.00135). More information is included in the ReadMe.txt file.
DOI: 10.7488/ds/3160
title: Data for paper entitled:‘In vivo application of an implantable tri-anchored methylene blue-based electrochemical pH sensor’

description: Data associated with the manuscript 'In vivo application of an implantable tri-anchored methylene blue-based electrochemical pH sensor.' Design and evaluation of an implantable electrochemical pH sensor based on the immobilisation of methylene blue on a microfabricated Pt electrode. The analytical characteristics of the sensor were evaluated. Thee platform was applied for the detection of pH changes in an in vivo model (naturally occurring pre-clinical ovine pulmonary adenocarcinoma (OPA)). Dataset includes set of tables containing the data used for obtaining figures and results.
DOI: 10.7488/ds/3127
title: PET Imaging experimental dataset - Victoria Morley

description: Data generated by Victoria Morley as part of her PhD research
DOI: 10.7488/ds/3129
title: OTU table: Caecal microbiota transplantation between two different chicken broiler lines

description: Table describing the abundance of OTUs in samples from chicken (Ross 308) caecal samples and controls (OTUs.shared). Table describing the taxonomy of each OTU present in OTUs.shared (OTUs.taxonomy). Chickens received either a chicken caecal content transplant or a control.
DOI: 10.7488/ds/3155
title: Traveller Genes Data Dictionary

description: Traveller Genes is a research study supported by the Traveller community. We're looking at the genetics, origins and health of over 200 volunteers who have at least two grandparents who are or were Travellers. This includes Scottish Travellers, Irish Travellers, Romanichal or Romany, or Welsh Kale. We aim to identify the genetic origins and relationships of the Scottish Traveller community e.g. Highland Travellers, Lowland Travellers, Borders Romanichal Travellers. We also want to understand how Scottish Travellers are related to other communities and their overall patterns of health. Participants are asked to complete a questionnaire and provide a saliva sample. This data dictionary outlines what volunteers were asked and indicates the data you can access. To access the data, please e-mail travellergenes@ed.ac.uk.
DOI: 10.7488/ds/3188
title: Fungal allergic sensitisation and the gut mycobiome in preschool aged children

description: Fungal exposure is associated with the risk of allergen sensitisation, and this is thought to be partly influenced by microbiota. While many studies have reported associations between gut microbiota and allergen sensitisation, fewer studies have specifically examined the relationship between gut mycobiome and allergen sensitisation. This study sought to characterise the gut mycobiome of 116 Zimbabwean pre-school aged children (≤5 years old). The characterised gut mycobiome was related to fungal sensitisation assessed by skin prick tests (SPTs) and fungal seroreactivity determined by enzyme-linked immunosorbent assay (ELISA). The raw data and the demographic data are presented here.
DOI: 10.7488/ds/3065
title: Mistimed malaria parasites re-synchronise with host feeding-fasting rhythms by shortening their intra-erythrocytic development duration.

description: Malaria parasites exhibit daily rhythms in the intraerythrocytic development cycle (IDC) that underpins asexual replication in the blood. The IDC schedule is aligned with the timing of host feeding-fasting rhythms. When the IDC schedule is perturbed to become mismatched to host rhythms, it readily reschedules but it is not known how. We intensively follow four groups of infections that have different temporal alignments between host rhythms and the IDC schedule for 10 days before and after the peak in asexual densities. We compare how the duration, synchrony, and timing of the IDC differs between parasites in control infections and those forced to reschedule by 12 hours, and ask whether the density of parasites affects the rescheduling process. Our experiments reveal parasites shorten the IDC duration by 2-3 hours to become realigned to host feeding-fasting rhythms with 5-6 days, in a density independent manner. Furthermore, parasites are able to reschedule without significant fitness costs for them or their hosts. Understanding the extent of, and limits on, plasticity in the IDC schedule may reveal targets novel interventions, such as drugs to disrupt IDC regulation and preventing tolerance to existing drugs by IDC dormancy.
DOI: 10.7488/ds/3138
title: Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2019: a systematic analysis

description: This dataset provides the aggregated data on RSV morbidity and mortality in children younger than 5 years globally. The data were collected from a systematic literature review and from a global collaboration network named RSV GEN that shares unpublished RSV epidemiology data. The associated core R codes are also provided.