cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.14003789
title: Data from: A fixed mutation in the respiratory complex I impairs mitochondrial bioenergetics in the endangered Apennine brown bear

description: Description

This dataset contains all molecular dynamics (MD) simulation post-processed data supporting the analysis presented in our study on the impact of the G527E mutation in the ND5 subunit of mitochondrial Complex I from the endangered Apennine brown bear (Ursus arctos marsicanus). The simulations compare three systems: the naturally occurring Apennine variant, a control variant (CTRL), and the engineered G527E variant (E527).

The data are organized into directories corresponding to the main analyses reported in the manuscript and supplementary materials:

Figure_4/:



A_RMSF/: Root Mean Square Fluctuation data for selected backbone atoms across systems.

B_Contacts/: Atomic contact profiles (within 15 Å) across three replicates for each system.

D_Water/: Time-resolved hydration data in key subunit interfaces for the ND5-ND4 channel.


Starting_coordinates/:



GROMACS coordinate files (.gro) for three simulation replicates per system, capturing representative snapshots used as MD input.


Supplementary_Figure_S4, S5, S6/:



These folders include projection of the backbone trajectories along the first eigenvector of the motion obtained by PCA (.pdb files) of the ND5 subunit and hydration profiles (.dat files) corresponding to key water channels within Complex I. Each file is systematically named to specify the system (i.e., Apennine, E527, or CTRL), the type of measurement, and the replicate number.


Applications:

This dataset is intended to support the validation and reproducibility of our structural and functional findings.

File formats:

Includes .xvg, .dat, .pdb, and .gro files compatible with GROMACS, VMD, and standard scientific plotting tools.

Keywords:

ND5, Complex I, G527E mutation, Apennine brown bear, mitochondrial bioenergetics, molecular dynamics, hydration, respiratory chain, GROMACS
DOI: 10.5281/zenodo.15885554
title: Data from: A fixed mutation in the respiratory complex I impairs mitochondrial bioenergetics in the endangered Apennine brown bear

description: Description

This dataset contains all molecular dynamics (MD) simulation post-processed data supporting the analysis presented in our study on the impact of the G527E mutation in the ND5 subunit of mitochondrial Complex I from the endangered Apennine brown bear (Ursus arctos marsicanus). The simulations compare three systems: the naturally occurring Apennine variant, a control variant (CTRL), and the engineered G527E variant (E527).

The data are organized into directories corresponding to the main analyses reported in the manuscript and supplementary materials:

Figure_4/:



A_RMSF/: Root Mean Square Fluctuation data for selected backbone atoms across systems.

B_Contacts/: Atomic contact profiles (within 15 Å) across three replicates for each system.

D_Water/: Time-resolved hydration data in key subunit interfaces for the ND5-ND4 channel.


Starting_coordinates/:



GROMACS coordinate files (.gro) for three simulation replicates per system, capturing representative snapshots used as MD input.


Supplementary_Figure_S4, S5, S6/:



These folders include projection of the backbone trajectories along the first eigenvector of the motion obtained by PCA (.pdb files) of the ND5 subunit and hydration profiles (.dat files) corresponding to key water channels within Complex I. Each file is systematically named to specify the system (i.e., Apennine, E527, or CTRL), the type of measurement, and the replicate number.


Applications:

This dataset is intended to support the validation and reproducibility of our structural and functional findings.

File formats:

Includes .xvg, .dat, .pdb, and .gro files compatible with GROMACS, VMD, and standard scientific plotting tools.

Keywords:

ND5, Complex I, G527E mutation, Apennine brown bear, mitochondrial bioenergetics, molecular dynamics, hydration, respiratory chain, GROMACS
DOI: 10.15468/dl.prm3z3
title: Occurrence Download

description: A dataset containing 64 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ituglanis boitata"
 ]
}

 The dataset includes 64 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013742-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.d3xkbp
title: Occurrence Download

description: A dataset containing 563 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Batrachoseps wrighti)"
 ]
}

 The dataset includes 563 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013743-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.y3kujm
title: Occurrence Download

description: A dataset containing 3061961 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is EOD – eBird Observation Dataset",
 "Geometry POLYGON((-80.97126 28.18104,-80.09234 28.20648,-80.09234 28.90799,-81.0599 29.07445,-80.97126 28.18104))",
 "OccurrenceStatus is Present"
 ]
}

 The dataset includes 3061961 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013655-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.25f7uv
title: Occurrence Download

description: A dataset containing 18831 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Human Observation, Specimen)",
 "Geometry POLYGON((-172.5 53.27,-144.63 53.27,-144.63 64.31,-172.5 64.31,-172.5 53.27))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "License is one of (CC0 1.0, CC-BY 4.0, CC-BY-NC 4.0)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ochrophyta"
 ]
}

 The dataset includes 18831 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013745-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3b97bq
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cynodon dactylon",
 "Country is United Arab Emirates",
 "HasCoordinate is true"
 ]
}

 The dataset includes 21 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013744-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.se5gq5
title: Occurrence Download

description: A dataset containing 1278 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Rorippa cantoniensis"
 ]
}

 The dataset includes 1278 records from 103 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013746-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.m75nkf
title: Occurrence Download

description: A dataset containing 91 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Avena hirsuta, Avena hirsuta, Avena hirtula, Avena hoppeana, Avena lagascae, Avena lusitanica, Avena madritensis, Avena malzevii, Avena matritensis, Avena maxima)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 91 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013747-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ygdjmj
title: Occurrence Download

description: A dataset listing the 80 species recorded in GBIF matching the query:
{
 "and" : [
 "DatasetKey is Flora y Fauna de los predios Balcones 1 y Balcones 2 en Yopal-Casanare: Línea base de un proceso de restauración",
 "TaxonKey is Plantae"
 ]
}

 The dataset's 80 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013734-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j9xs37
title: Occurrence Download

description: A dataset containing 7 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is BOLD:ADL5003"
 ]
}

 The dataset includes 7 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013752-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.bugadb
title: Occurrence Download

description: A dataset containing 17 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tagetes minuta",
 "Country is Pakistan",
 "HasCoordinate is true"
 ]
}

 The dataset includes 17 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013749-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.wnn75b
title: Occurrence Download

description: A dataset containing 2043 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tagetes minuta",
 "Country is South Africa",
 "HasCoordinate is true"
 ]
}

 The dataset includes 2043 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013750-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.nekwsw
title: Occurrence Download

description: A dataset containing 87 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Ammodendron bifolium)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 87 records from 7 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013751-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.p9u3bm
title: Occurrence Download

description: A dataset containing 26 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Tagetes minuta",
 "Country is Türkiye",
 "HasCoordinate is true"
 ]
}

 The dataset includes 26 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013753-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kzyf72
title: Occurrence Download

description: A dataset containing 933 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Craugastor augusti)"
 ]
}

 The dataset includes 933 records from 47 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013754-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.7910/dvn/yrapdt
title: Replication Data for: Overconfidence and Preferences for Gun Use: Evidence from Six Countries in the Americas

description: Replication Data for: Overconfidence and Preferences for Gun Use: Evidence from Six Countries in the Americas
DOI: 10.15468/dl.u39nku
title: Occurrence Download

description: A dataset containing 77222 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bupleurum falcatum"
 ]
}

 The dataset includes 77222 records from 749 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013664-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hka9cx
title: Occurrence Download

description: A dataset containing 11 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Avena nuda wiestii, Avena sallentiana, Avena sativa barbata, Avena segetalis, Avena segetalis, Avena serrulatiglumis, Avena sterilis segetalis, Avena sterilis atherantha, Avena sterilis atheranthera, Avena sterilis barbata)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "BasisOfRecord" : [
 "is one of (Fossil, Living Specimen, Machine Observation)"
 ]
 }
 },
 "Continent is Europe",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2024"
 ]
}

 The dataset includes 11 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013757-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jhtvjk
title: Occurrence Download

description: A dataset containing 139 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Draba majuscula"
 ]
}

 The dataset includes 139 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013756-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.htfbhw
title: Occurrence Download

description: A dataset containing 31425481 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 31425481 records from 2935 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013630-250711103210423/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xej522
title: Occurrence Download

description: A dataset containing 981 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Gavia arctica (Linnaeus, 1758)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 981 records from 20 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036780-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.evtddq
title: Occurrence Download

description: A dataset containing 1136 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ctenosaura acanthura (Shaw, 1802)"
 ]
}

 The dataset includes 1136 records from 56 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279389-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.29q3u5
title: Occurrence Download

description: A dataset containing 2699 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Salvinia auriculata Aubl."
 ]
}

 The dataset includes 2699 records from 242 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290217-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kaxvzs
title: Occurrence Download

description: A dataset containing 52 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-11.29149 35.03493,3.20574 35.03493,3.20574 59.04427,-11.29149 59.04427,-11.29149 35.03493))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Argyrosomus regius (Asso, 1801)",
 "Year 2000-2023"
 ]
}

 The dataset includes 52 records from 10 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277762-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hq6wpx
title: Occurrence Download

description: A dataset containing 629 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Bovista paludosa Lév.)"
 ]
}

 The dataset includes 629 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279395-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jfnvjw
title: Occurrence Download

description: A dataset containing 6912 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Prosopis juliflora (Sw.) DC."
 ]
}

 The dataset includes 6912 records from 328 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290203-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.krprrp
title: Occurrence Download

description: A dataset containing 1201 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Hippodamia variegata (Goeze, 1777)",
 "Year is greater than 2013",
 "Geometry MULTIPOLYGON (((19.51 47.46,19.51 36.21,6.41 36.21,6.41 47.46,19.51 47.46)))"
 ]
}

 The dataset includes 1201 records from 42 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0036787-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sfqxb5
title: Occurrence Download

description: A dataset containing 26147 species occurrences available in GBIF matching the query:
{
 "and" : [
 "PublishingOrg is a8144f37-5ff7-4137-9400-94b5b2ea4ec4",
 "TaxonKey is Gastropoda"
 ]
}

 The dataset includes 26147 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279397-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qgsqst
title: Occurrence Download

description: A dataset listing the 1860 species recorded in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Occurrence evidence, Specimen, Human Observation, Material sample, Living Specimen, Machine Observation)",
 "CoordinateUncertaintyInMeters 0.0-4310.0",
 "Country is Finland",
 "MediaType is Image",
 "OccurrenceStatus is Present",
 "TaxonKey is Tracheophyta",
 "Year 1975-2023"
 ]
}

 The dataset's 1860 records were derived from 33 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0021793-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.pj3v4a
title: Occurrence Download

description: A dataset containing 160 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Allium rouyi Gaut."
 ]
}

 The dataset includes 160 records from 19 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004771-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.767yzs
title: Occurrence Download

description: A dataset containing 259864 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Oryza sativa L.",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 259864 records from 274 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0279403-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8emtmc
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is South Africa",
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Chrysopidae, Hemerobiidae)"
 ]
}

 The dataset includes 77 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0290220-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.3b6pc8
title: Occurrence Download

description: A dataset containing 137 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is Chamaesaura aenea (Fitzinger, 1843)"
 ]
}

 The dataset includes 137 records from 13 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277763-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.fkmwxm
title: Occurrence Download

description: A dataset containing 68149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-75.0862 -15.49751,-74.83471 -15.19267,-74.60227 -15.05549,-74.6137 -14.83448,-74.68991 -14.68206,-74.83852 -14.51059,-74.98713 -14.44962,-75.00237 -14.24005,-75.00999 -14.05333,-75.17765 -13.94664,-75.35674 -13.87805,-75.42533 -13.84376,-75.43676 -13.69896,-75.42152 -13.51224,-75.42914 -13.3522,-75.58156 -13.28362,-75.68826 -13.33696,-75.63872 -13.12739,-75.56632 -13.06642,-75.53203 -12.97497,-75.61586 -12.91781,-75.75304 -12.97878,-75.97023 -12.92924,-76.09598 -13.07404,-76.21791 -13.19978,-76.30175 -13.26837,-76.29031 -13.55797,-76.45798 -13.73325,-76.49989 -13.85519,-76.38939 -14.18289,-76.12265 -14.60967,-75.77971 -14.97166,-75.40247 -15.2765,-75.31102 -15.38319,-75.0862 -15.49751))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Aves"
 ]
}

 The dataset includes 68149 records from 28 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0055580-230530130749713/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xeh4yy
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "and" : [
 "GadmGid is one of (SRB, XKO)",
 "OccurrenceStatus is Present",
 "TaxonKey is Ficedula parva (Bechstein, 1792)"
 ]
}

 The dataset includes 15 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0277756-220831081235567/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.