cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.d8jwqa
title: Occurrence Download

description: A dataset containing 17240 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Proxenus hospes Freyer, 1831, Prunella laciniata (L.) L.)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 17240 records from 254 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325349-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b7ftwg
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Machine Observation, Human Observation)",
 "GadmGid is one of (CHN.31_1, CHN.1_1, CHN.24_1, CHN.15_1)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Pleione bulbocodioides (Franch.) Rolfe"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0016201-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.zgbyv2
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Microdesmus africanus Dawson, 1979"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325374-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qurtjh
title: Occurrence Download

description: A dataset containing 839610 species occurrences available in GBIF matching the query:
{
 "and" : [
 "DatasetKey is iNaturalist Research-grade Observations",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Country is one of (Canada, Mexico, United States of America)",
 "EventDate is greater than or equal to 2023-07-17",
 "EventDate is less than or equal to 2023-08-16",
 {
 "not" : {
 "Issue" : [
 "is one of (Basis of record invalid, Coordinate reprojection failed, Coordinate reprojection suspicious, Coordinate precision invalid, Coordinate uncertainty meters invalid, Country mismatch, Country invalid, Geodetic datum invalid, Presumed swapped coordinate, Presumed negated longitude, Presumed negated latitude, Country coordinate mismatch)"
 ]
 }
 }
 ]
}

 The dataset includes 839610 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013653-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.g3bytx
title: Occurrence Download

description: A dataset containing 22495 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Blepharostoma trichophyllum (L.) Dumort., Calypogeia fissa (L.) Raddi)",
 "Geometry POLYGON((-9.36035 44.71551,-10.59082 42.81152,-11.82129 36.80928,-7.69043 36.17336,-3.38379 35.88905,3.12012 38.13456,9.18457 38.20366,11.7334 37.16032,12.78809 34.74161,17.09473 33.79741, 23.15918 34.23451,30.10254 32.62087,33.2666 32.99024,35.72754 35.03,33.00293 35.53223,28.69629 35.17381,28.34473 36.31513,25.7959 37.50973,24.91699 39.90974,28.78418 40.6473,30.71777 41.17865,36.87012 45.213,38.18848 46.98025,38.71582 47.7541,39.94629 47.93107,40.20996 49.61071,37.0459 50.34546,35.72754 50.40152,33.79395 52.26816,31.68457 51.94426,31.4209 53.27835,32.56348 53.43572,30.98145 54.77535,30.89355 55.52863,28.43262 56.02295,27.20215 57.65716,27.37793 58.30949,27.90527 59.17593,29.66309 59.88894,27.6416 60.58697,31.50879 62.75473,28.78418 69.83962,30.89355 70.28912,29.22363 71.55274,21.75293 71.30079,14.28223 70.14036,11.38184 67.47492,4.87793 63.66576,-5.53711 71.52491,-10.63477 71.69129,-21.5332 67.74276,-28.56445 65.36684,-24.3457 61.35461,-9.36035 44.71551))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1980",
 "Year is less than or equal to 2021"
 ]
}

 The dataset includes 22495 records from 184 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0155165-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kbecsa
title: Occurrence Download

description: A dataset containing 77 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Kinosternon dunni Schmidt, 1947"
 ]
}

 The dataset includes 77 records from 11 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0013661-230828120925497/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mjmf62
title: Occurrence Download

description: A dataset containing 60 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Synodontis macrostoma Skelton & White, 1990"
 ]
}

 The dataset includes 60 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0325336-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.4wxc57
title: Occurrence Download

description: A dataset listing the 3434612 species recorded in GBIF matching the query:
{
 "OccurrenceStatus" : [
 "is Present"
 ]
}

 The dataset's 3434612 records were derived from 43119 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0171177-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.8wpyvx
title: Occurrence Download

description: A dataset listing the 4 species recorded in GBIF matching the query:
{
 "TaxonKey" : [
 "is Vesperus luridus (Rossi, 1794)"
 ]
}

 The dataset's 4 records were derived from 82 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0238185-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w68s9s
title: Occurrence Download

description: A dataset containing 5 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Material sample, Specimen, Fossil, Living Specimen)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Gossypium raimondii Ulbr."
 ]
}

 The dataset includes 5 records from 4 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084784-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.hrrv8e
title: Occurrence Download

description: A dataset containing 2524 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Canis Linnaeus, 1758)",
 "Continent is one of (Asia)"
 ]
}

 The dataset includes 2524 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012369-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ehv5kd
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cycnoches quatuorcristis D.E.Benn."
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152778-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.er34e8
title: Occurrence Download

description: A dataset containing 46 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Dalechampia tenuiramea Müll.Arg."
 ]
}

 The dataset includes 46 records from 23 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152777-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.yn2xap
title: Occurrence Download

description: A dataset containing 42 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Mexico",
 "TaxonKey is Atropoides olmec (Pérez-Higareda, Smith & Juliá, 1985)"
 ]
}

 The dataset includes 42 records from 9 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0003140-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b9vm9k
title: Occurrence Download

description: A dataset containing 683361 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Germany",
 "Geometry POLYGON((-180 -90,180 -90,180 90,-180 90,-180 -90))",
 "OccurrenceStatus is Present",
 "TaxonKey is Fungi"
 ]
}

 The dataset includes 683361 records from 436 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0152618-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.cvwmd5
title: Occurrence Download

description: A dataset containing 11748 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Phylloscopus sibillatrix (Bechstein, 1792)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 2000",
 "Year is less than or equal to 2022",
 "Country is United Kingdom of Great Britain and Northern Ireland",
 {
 "or" : [
 "CoordinateUncertaintyInMeters is less than 10000",
 "CoordinateUncertaintyInMeters is null"
 ]
 }
 ]
}

 The dataset includes 11748 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084782-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.asj33t
title: Occurrence Download

description: A dataset containing 410303 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Tyto alba (Scopoli, 1769)"
 ]
}

 The dataset includes 410303 records from 759 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0012371-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.b4mlw1
title: Occurrence Download

description: A dataset containing 5406 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "BasisOfRecord is Literature Occurrence",
 "BasisOfRecord is Specimen"
 ]
 },
 "Country is Venezuela (Bolivarian Republic of)",
 "TaxonKey is Lepidoptera"
 ]
}

 The dataset includes 5406 records from 62 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007959-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.sk96nf
title: Occurrence Download

description: A dataset containing 24675 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Galium anisophyllon Vill.",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 24675 records from 117 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0084786-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.xdzu7v
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Costa Rica",
 "Geometry POLYGON((-84.35371 10.24544,-84.35921 9.95705,-84.11064 9.95567,-84.10927 10.24269,-84.35371 10.24544))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Cephalopterus glabricollis Gould, 1851"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0014812-210819072339941/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ijmg8s
title: Occurrence Download

description: A dataset containing 1617080 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((78.83789 21.5209,100.70508 19.76309,116.80664 25.66933,125.5957 36.91934,130.51757 53.72402,126.50977 62.23184,107.87695 68.84121,89.80664 67.85684,60.13476 60.26309,41.64258 54.98965,41.29102 46.8334,49.86914 34.4584,78.83789 21.5209))",
 "HasCoordinate is true",
 "TaxonKey is Tracheophyta",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 1617080 records from 215 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007960-190813142620410/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ypm85d
title: Occurrence Download

description: A dataset containing 81158 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Carex halleriana Asso",
 "HasCoordinate is true",
 "HasGeospatialIssue is false"
 ]
}

 The dataset includes 81158 records from 685 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044011-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9f8f47
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cyperus thunbergii Vahl",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044021-250525065834625/datasets/export for details.
DOI: 10.5281/zenodo.10600047
title: Retrieve, Merge, Predict: Augmenting Tables with Data Lakes

description: Files composing the YADL data lake, for the paper "Retrieve, Merge, Predict: Augmenting Tables with Data Lakes (Experiment, Analysis & Benchmark Paper)"

We present an in-depth analysis of data discovery for analytics in data lakes, focusing on table augmentation for given machine learning tasks. We analyze alternative methods used in the three key steps: retrieving joinable tables, merging information, and predicting with the resultant table. As data lakes, the paper uses YADL (Yet Another Data Lake) -- a novel dataset developed as a tool for benchmarking this data discovery task -- and Open Data US, a well-referenced real data lake. Through systematic exploration on both lakes, our study outlines the importance of accurately retrieving join candidates, and the efficiency of simple aggregation methods. We report new insights on the benefits of existing solutions and on the their limitations, aiming at guiding future research in this space.

Archives provided here follow the notation used for the experiments, which is different from what is reported in the paper. The four YADL versions available here are:



"binary_update" (YADL Binary)

"wordnet_full" (YADL Base)

"wordnet_vldb_10" (YADL 10k)

"wordnet_vldb_50" (YADL 50k)
DOI: 10.5281/zenodo.10624396
title: Retrieve, Merge, Predict: Augmenting Tables with Data Lakes

description: Files composing the YADL data lake, for the paper "Retrieve, Merge, Predict: Augmenting Tables with Data Lakes (Experiment, Analysis & Benchmark Paper)"

We present an in-depth analysis of data discovery for analytics in data lakes, focusing on table augmentation for given machine learning tasks. We analyze alternative methods used in the three key steps: retrieving joinable tables, merging information, and predicting with the resultant table. As data lakes, the paper uses YADL (Yet Another Data Lake) -- a novel dataset developed as a tool for benchmarking this data discovery task -- and Open Data US, a well-referenced real data lake. Through systematic exploration on both lakes, our study outlines the importance of accurately retrieving join candidates, and the efficiency of simple aggregation methods. We report new insights on the benefits of existing solutions and on the their limitations, aiming at guiding future research in this space.

Archives provided here follow the notation used for the experiments, which is different from what is reported in the paper. The four YADL versions available here are:



"binary_update" (YADL Binary)

"wordnet_full" (YADL Base)

"wordnet_vldb_10" (YADL 10k)

"wordnet_vldb_50" (YADL 50k)
DOI: 10.15468/dl.3dwyj9
title: Occurrence Download

description: A dataset containing 52774 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Teucrium montanum L.",
 "OccurrenceStatus is Present",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "Year is greater than or equal to 1900",
 "Year is less than or equal to 2010"
 ]
}

 The dataset includes 52774 records from 250 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044014-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.s7w4ng
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Cymbella cymbiformis C.Agardh, 1830",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((35.6306 -23.844,35.6007 -23.8125,35.6007 -24.0157,35.6306 -23.844))"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044022-250525065834625/datasets/export for details.
DOI: 10.18739/a2hd7nv4m
title: Mean Annual Temperature, Methane, Total Air Content, Delta 15N-N2, and Delta Age from the Greenland Ice Sheet Project Two (GISP2), North Greenland Eemian Ice Drilling (NEEM), and North Greenland Ice Core Project (NGRIP) ice cores, 0-18 thousand years before present

description: We present new measurements of methane (CH4), nitrogen isotopes (d15N-N2), and total air content (TAC) from the North Greenland Eemian Ice Drilling (NEEM), North Greenland Ice Core Project (NGRIP), and Greenland Ice Sheet Project Two (GISP2) Greenland ice cores from the Last Glacial Maximum through the late Holocene (0 to ~18 thousand years before present [ka BP]). These records provide insight into spatial pattern of Greenland climate evolution across the deglaciation and the Holocene Thermal Maximum. The methane data allow for gas-phase synchronization of ice cores across Greenland and Antarctica, providing empirical delta age reconstructions. The nitrogen isotopic composition data allow for reconstruction of abrupt Greenland surface climate variations, which is provided for all 3 sites. Data are a combination of measurements conducted at Oregon State University, Scripps Institution of Oceanography, and the National Institute for Polar Research using previously established techniques.
DOI: 10.15468/dl.hqqtye
title: Occurrence Download

description: A dataset containing 13 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Isolepis angelica B.L.Burtt",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "BasisOfRecord is one of (Specimen, Living Specimen, Observation, Human Observation, Machine Observation, Material sample, Literature Occurrence, Material citation, Occurrence evidence)",
 "Geometry POLYGON ((30.0251 -31.3959,30.5701 -30.7329,30.5701 -28.5786,25.5395 -28.5786,25.5395 -32.9007,28.2048 -32.9007,28.5753 -32.6569,29.4902 -31.7517,30.0251 -31.3959))"
 ]
}

 The dataset includes 13 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0044024-250525065834625/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5281/zenodo.15659398
title: Data for "Bile acids target an exposed cavity in the glucocorticoid receptor modulating receptor self-assembly, chromatin binding and transcriptional activity"

description: This deposit contains all the single-molecule trajectories reported in "Bile acids target an exposed cavity in the glucocorticoid receptor modulating receptor self-assembly, chromatin binding and transcriptional activity".

To access the tracks, open each mat file in MATLAB. This contains a MATLAB table with the following fields, where each row i corresponds to a different dataset:



summary_table.cell_protein{i} identifies the cell line and protein being tracked

summary_table.treatment{i} identifies the treatment conditions and durations

summary_table.X{i}{j} is an Nx2 array of x and y coordinates (in microns) for track j in dataset i. N is the number of localizations in that track.


Description of the files:




File name
Corresponding Figure
Exposure time (ms)
Interval (ms)


summary_table_Fig6_e10ms_i200ms.mat
6
10
200


summary_table_FigS7_e10ms_i10ms.mat
S7A-B
10
10


summary_table_FigS7_e10ms_i200ms.mat
S7A-B
10
200