cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/nnjo2s
title: A checkered history: distribution of Pyrgus Hübner species in The Bahamas, including the first Caribbean records of Pyrgus albescens Plötz (Lepidoptera: Hesperiidae)

description: This dataset contains the digitized treatments in Plazi based on the original journal article Miller, Jacqueline Y., Matthews, Deborah L., Warren, Andrew D. (2018): A checkered history: distribution of Pyrgus Hübner species in The Bahamas, including the first Caribbean records of Pyrgus albescens Plötz (Lepidoptera: Hesperiidae). Insecta Mundi 635: 1-9, DOI: http://doi.org/10.5281/zenodo.3708124
DOI: 10.5281/zenodo.3697722
title: Temperature sensor data for locations in Smart-Santander testbed of Fed4FIRE+

description: This is a database dump with temperature sensor-values (called "phenomenons" in testbed API), collected during the Fed4FIRE+ project SECTOR (Algorithm to determine a cost-effective, optimal SpatiaL-dEployment for smart-City environmenTal sensOr netwoRks).
DOI: 10.5281/zenodo.3697721
title: Temperature sensor data for locations in Smart-Santander testbed of Fed4FIRE+

description: This is a database dump with temperature sensor-values (called "phenomenons" in testbed API), collected during the Fed4FIRE+ project SECTOR (Algorithm to determine a cost-effective, optimal SpatiaL-dEployment for smart-City environmenTal sensOr netwoRks).
DOI: 10.15468/tdlzi3
title: Provisional revision of the genus Odontocera Audinet-Serville, 1834 (Coleoptera: Cerambycidae). I: exclusions, new rank, synonymies and the description of two new genera

description: This dataset contains the digitized treatments in Plazi based on the original journal article Clarke, Robin O. S. (2018): Provisional revision of the genus Odontocera Audinet-Serville, 1834 (Coleoptera: Cerambycidae). I: exclusions, new rank, synonymies and the description of two new genera. Insecta Mundi 637: 1-27, DOI: http://doi.org/10.5281/zenodo.3708132
DOI: 10.5281/zenodo.3708265
title: Dataset related to the article "Calcium as a Key Player in Arrhythmogenic Cardiomyopathy: Adhesion Disorder or Intracellular Alteration?"

description: This record contains raw data related to the article “Calcium as a Key Player in Arrhythmogenic Cardiomyopathy: Adhesion Disorder or Intracellular Alteration?" Abstract: Arrhythmogenic cardiomyopathy (ACM) is an inherited heart disease characterized by sudden death in young people and featured by fibro-adipose myocardium replacement, malignant arrhythmias, and heart failure. To date, no etiological therapies are available. Mutations in desmosomal genes cause abnormal mechanical coupling, trigger pro-apoptotic signaling pathways, and induce fibro-adipose replacement. Here, we discuss the hypothesis that the ACM causative mechanism involves a defect in the expression and/or activity of the cardiac Ca2+ handling machinery, focusing on the available data supporting this hypothesis. The Ca2+ toolkit is heavily remodeled in cardiomyocytes derived from a mouse model of ACM defective of the desmosomal protein plakophilin-2. Furthermore, ACM-related mutations were found in genes encoding for proteins involved in excitation-contraction coupling, e.g., type 2 ryanodine receptor and phospholamban. As a consequence, the sarcoplasmic reticulum becomes more eager to release Ca2+, thereby inducing delayed afterdepolarizations and impairing cardiac contractility. These data are supported by preliminary observations from patient induced pluripotent stem-cell-derived cardiomyocytes. Assessing the involvement of Ca2+ signaling in the pathogenesis of ACM could be beneficial in the treatment of this life-threatening disease.
DOI: 10.5281/zenodo.3708266
title: Dataset related to the article "Calcium as a Key Player in Arrhythmogenic Cardiomyopathy: Adhesion Disorder or Intracellular Alteration?"

description: This record contains raw data related to the article “Calcium as a Key Player in Arrhythmogenic Cardiomyopathy: Adhesion Disorder or Intracellular Alteration?" Abstract: Arrhythmogenic cardiomyopathy (ACM) is an inherited heart disease characterized by sudden death in young people and featured by fibro-adipose myocardium replacement, malignant arrhythmias, and heart failure. To date, no etiological therapies are available. Mutations in desmosomal genes cause abnormal mechanical coupling, trigger pro-apoptotic signaling pathways, and induce fibro-adipose replacement. Here, we discuss the hypothesis that the ACM causative mechanism involves a defect in the expression and/or activity of the cardiac Ca2+ handling machinery, focusing on the available data supporting this hypothesis. The Ca2+ toolkit is heavily remodeled in cardiomyocytes derived from a mouse model of ACM defective of the desmosomal protein plakophilin-2. Furthermore, ACM-related mutations were found in genes encoding for proteins involved in excitation-contraction coupling, e.g., type 2 ryanodine receptor and phospholamban. As a consequence, the sarcoplasmic reticulum becomes more eager to release Ca2+, thereby inducing delayed afterdepolarizations and impairing cardiac contractility. These data are supported by preliminary observations from patient induced pluripotent stem-cell-derived cardiomyocytes. Assessing the involvement of Ca2+ signaling in the pathogenesis of ACM could be beneficial in the treatment of this life-threatening disease.
DOI: 10.15468/avsxfe
title: Seven new taxa from the butterfly subtribe Euptychiina (Lepidoptera: Nymphalidae: Satyrinae) with revisional notes on Harjesia Forster, 1964 and Pseudeuptychia Forster, 1964

description: This dataset contains the digitized treatments in Plazi based on the original journal article Nakahara, Shinichi, Willmott, Keith R., Mielke, Olaf H. H., Schwartz, Johanna, Zacca, Thamara, Espeland, Marianne, Lamas, Gerardo (2018): Seven new taxa from the butterfly subtribe Euptychiina (Lepidoptera: Nymphalidae: Satyrinae) with revisional notes on Harjesia Forster, 1964 and Pseudeuptychia Forster, 1964. Insecta Mundi 639: 1-38, DOI: http://doi.org/10.5281/zenodo.3708152
DOI: 10.3886/e114064v1-22987
title: Replication data for: Does the Technological Content of Government Demand Matter for Private R&D? Evidence from US States

description: Governments purchase everything from airplanes to zucchini. This paper investigates the role of the technological content of government procurement in innovation. In a theoretical model, we first show that a shift in the composition of public purchases toward high-tech products translates into higher economy-wide returns to innovation, leading to an increase in the aggregate level of private R&D. Using unique data on federal procurement in US states and performing panel fixed-effects estimations, we find support for the model's prediction of a positive R&D effect of the technological content of government procurement. Instrumental-variable estimations suggest a causal interpretation of our findings. (JEL H57, H76, O31, O32, O38)
DOI: 10.3886/e114064v1-22988
title: Replication data for: Does the Technological Content of Government Demand Matter for Private R&D? Evidence from US States

description: Governments purchase everything from airplanes to zucchini. This paper investigates the role of the technological content of government procurement in innovation. In a theoretical model, we first show that a shift in the composition of public purchases toward high-tech products translates into higher economy-wide returns to innovation, leading to an increase in the aggregate level of private R&D. Using unique data on federal procurement in US states and performing panel fixed-effects estimations, we find support for the model's prediction of a positive R&D effect of the technological content of government procurement. Instrumental-variable estimations suggest a causal interpretation of our findings. (JEL H57, H76, O31, O32, O38)
DOI: 10.5281/zenodo.3708055
title: Automated Evolution of Logging Statement Levels Using Git Histories and Degree of Interest

description: This data is double-blind.
DOI: 10.25919/5e6a866b05e8c
title: Parkes observations for project P958 semester 2019OCTS_69

description: Fast radio bursts (FRBs) continue to raise more questions than they answer. Until last year, only one burst – the only one known to repeat - had been localized to a bright radio nebula (either a young supernova remnant or pulsar wind nebulae) in a distant dwarf galaxy. Over the last two year searches with the Australian Square Kilometre Array Pathfinder (ASKAP) have detected 31 bursts, five of which have been localised to host galaxies at redshifts ranging from 0.1 to 0.5. These bursts and their hosts are very unlike the repeater, suggesting there may be a dichotomy in the population. However one of the arcminute-localised ASKAP FRBs has recently been found to repeat. Here we propose to search and study repetitions in this FRB population. Our comprehensive sample and a dense monitoring campaign of well localised bursts, at a fluence limit more than 60 times lower than that of their detections to characterise the fraction of bursts that repeat. For bursts that repeat the unique wide bandwidth observations will be used to test leading models of burst emission.
DOI: 10.3886/e114064v1-22991
title: Replication data for: Does the Technological Content of Government Demand Matter for Private R&D? Evidence from US States

description: Governments purchase everything from airplanes to zucchini. This paper investigates the role of the technological content of government procurement in innovation. In a theoretical model, we first show that a shift in the composition of public purchases toward high-tech products translates into higher economy-wide returns to innovation, leading to an increase in the aggregate level of private R&D. Using unique data on federal procurement in US states and performing panel fixed-effects estimations, we find support for the model's prediction of a positive R&D effect of the technological content of government procurement. Instrumental-variable estimations suggest a causal interpretation of our findings. (JEL H57, H76, O31, O32, O38)
DOI: 10.5066/p9lzky6z
title: Estrogen equivalents of surface water and smallmouth bass estrogenic biomarker data in New Jersey, 2016-2017

description: The data were gathered as a preliminary assessment of estrogenicity under base-flow conditions at over 100 sites (lakes and streams) throughout New Jersey followed by more targeted sampling of smallmouth bass at nine sites with varying levels of estrogenicity. In 2016, 102 sites (lakes and streams) for the preliminary estrogenicity assessment were selected utilizing compiled results of previous monitoring studies (chemical and biological), current sampling networks, and other areas of concern based on input from stakeholders. Discrete grab surface water samples were collected under base-flow conditions in the fall of 2016 and analyzed for levels of estrogenicity using a bioluminescent yeast screen. Water samples for estrogenicity were also collected from the nine health sites in April/May of 2017 in combination with fish sampling and again in November 2017 under base flow conditions. In the spring of 2017, 20 adult smallmouth bass were collected from each of the nine sites (two river and seven reservoir sites). Fish were collected by boat electroshocking, euthanized in the field, weighed, measured, a blood sample collected and a necropsy completed that included documenting any visible abnormalities and collecting tissues for histopathology. Plasma obtained from blood samples was analyzed for vitellogenin, a yolk precursor widely used as an indicator of estrogenic exposure in immature and male fishes. Five to seven sections of testes were processed for microscopic analyses, embedded in paraffin, sectioned at 5 ?m, stained with hematoxylin and eosin. The presence of testicular oocytes was noted and the severity rated from 1 to 4 based on number and arrangement of oocytes.
DOI: 10.5281/zenodo.3708318
title: Dataset related to article "Illness Perception in Inflammatory Bowel Disease Patients is Different Between Patients With Active Disease or in Remission: A Prospective Cohort Study."

description: BACKGROUND: Inflammatory bowel diseases [IBD] are characterised by significant quality of life [QoL] impairment, as well as illness perception. Assessing illness perception may help in optimising the management of IBD patients. METHODS: In this single-centre, observational, transversal study, consecutive adult IBD patients were enrolled and stratified according to disease activity [active/remission]. The Revised Illness Perception Questionnaire [IPQ-R], based on identity, opinions, and causes of their disease was administered to all patients. Comparison within IPQ-R parameters was done between clinically active patients and those in remission. RESULTS: A total of 201 patients were enrolled (Crohn's disease [CD] = 47%). The most frequently reported IBD-related symptoms were fatigue [86.9%], loss of strength [83.3%], pain [80%], and weight loss [68.2%]. Active patients reported significantly more frequently fatigue [p = 0.005], sore eyes [p = 0.046], and sleep difficulties [p = 0.001], and reported more symptoms than controls [p = 0.023]. Overall, the patients considered stress [84.1%], altered immunity [69.32%], family problems [49.4%], and emotional status [40.9%] as the main causes of IBD. Work overload was more frequently considered as a disease cause in active patients than in those in remission [p = 0.002]. Smoking, family history, and previous inadequate therapies were considered as a relevant risk factor for illness by only 20% of patients. Active IBD patients had more negative thoughts on prognosis [p = 0.001] and more negative emotions [p &lt; 0.0001]. Patients in remission were significantly more convinced about treatment control [p = 0.007] and had clearer understanding of illness [p = 0.009]. CONCLUSIONS: Illness perception is impaired in IBD patients. Adequate educational and psychological support may be helpful in the optimal management of IBD patients.
DOI: 10.5281/zenodo.3708319
title: Dataset related to article "Illness Perception in Inflammatory Bowel Disease Patients is Different Between Patients With Active Disease or in Remission: A Prospective Cohort Study."

description: BACKGROUND: Inflammatory bowel diseases [IBD] are characterised by significant quality of life [QoL] impairment, as well as illness perception. Assessing illness perception may help in optimising the management of IBD patients. METHODS: In this single-centre, observational, transversal study, consecutive adult IBD patients were enrolled and stratified according to disease activity [active/remission]. The Revised Illness Perception Questionnaire [IPQ-R], based on identity, opinions, and causes of their disease was administered to all patients. Comparison within IPQ-R parameters was done between clinically active patients and those in remission. RESULTS: A total of 201 patients were enrolled (Crohn's disease [CD] = 47%). The most frequently reported IBD-related symptoms were fatigue [86.9%], loss of strength [83.3%], pain [80%], and weight loss [68.2%]. Active patients reported significantly more frequently fatigue [p = 0.005], sore eyes [p = 0.046], and sleep difficulties [p = 0.001], and reported more symptoms than controls [p = 0.023]. Overall, the patients considered stress [84.1%], altered immunity [69.32%], family problems [49.4%], and emotional status [40.9%] as the main causes of IBD. Work overload was more frequently considered as a disease cause in active patients than in those in remission [p = 0.002]. Smoking, family history, and previous inadequate therapies were considered as a relevant risk factor for illness by only 20% of patients. Active IBD patients had more negative thoughts on prognosis [p = 0.001] and more negative emotions [p &lt; 0.0001]. Patients in remission were significantly more convinced about treatment control [p = 0.007] and had clearer understanding of illness [p = 0.009]. CONCLUSIONS: Illness perception is impaired in IBD patients. Adequate educational and psychological support may be helpful in the optimal management of IBD patients.
DOI: 10.3886/e118202
title: Discretion and Disproportionality: Explaining the Underrepresentation of High-Achieving Students of Color in Gifted Programs

description: This memo documents the data files and analysis files used to generate the estimates found in "Discretion and Disproportionality: Explaining the Underrepresentation of High-Achieving Students of Color in Gifted Programs." The abstract of the paper is found below:<br><br>Students of color are underrepresented in gifted programs relative to White students, but the reasons for this underrepresentation are poorly understood. We investigate the predictors of gifted assignment using nationally representative, longitudinal data on elementary students. We document that even among students with high standardized test scores, Black students are less likely to be assigned to gifted services in both math and reading, a pattern that persists when controlling for other background factors, such as health and socioeconomic status, and characteristics of classrooms and schools. We then investigate the role of teacher discretion, leveraging research from political science suggesting that clients of government services from traditionally underrepresented groups benefit from diversity in the providers of those services, including teachers. Even after conditioning on test scores and other factors, Black students indeed are referred to gifted programs, particularly in reading, at significantly lower rates when taught by non-Black teachers, a concerning result given the relatively low incidence of assignment to own-race teachers among Black students.
DOI: 10.3886/e118202v1
title: Discretion and Disproportionality: Explaining the Underrepresentation of High-Achieving Students of Color in Gifted Programs

description: This memo documents the data files and analysis files used to generate the estimates found in "Discretion and Disproportionality: Explaining the Underrepresentation of High-Achieving Students of Color in Gifted Programs." The abstract of the paper is found below:<br><br>Students of color are underrepresented in gifted programs relative to White students, but the reasons for this underrepresentation are poorly understood. We investigate the predictors of gifted assignment using nationally representative, longitudinal data on elementary students. We document that even among students with high standardized test scores, Black students are less likely to be assigned to gifted services in both math and reading, a pattern that persists when controlling for other background factors, such as health and socioeconomic status, and characteristics of classrooms and schools. We then investigate the role of teacher discretion, leveraging research from political science suggesting that clients of government services from traditionally underrepresented groups benefit from diversity in the providers of those services, including teachers. Even after conditioning on test scores and other factors, Black students indeed are referred to gifted programs, particularly in reading, at significantly lower rates when taught by non-Black teachers, a concerning result given the relatively low incidence of assignment to own-race teachers among Black students.
DOI: 10.5066/p9bnj0bt
title: Physical, Chemical, and Bioassay Data from the Study on Effects of Elevated Major Ions in Surface Water Contaminated by a Produced Water from Oil Production

description: This dataset characterizes sensitivity of fathead minnow and a unionid mussel to elevated major ions in produced water from oil and gas extraction process.
DOI: 10.5281/zenodo.3708357
title: Results of the Nanofront open science survey

description: This dataset contains the results of the survey performed during the talk I gave about Open Science during the NanoFront Winter Retreat 2019 in Courchevel, France The talk, along with the questions and the context, can be found here: <pre>https://doi.org/10.5281/zenodo.2600527</pre>
DOI: 10.5281/zenodo.3708358
title: Results of the Nanofront open science survey

description: This dataset contains the results of the survey performed during the talk I gave about Open Science during the NanoFront Winter Retreat 2019 in Courchevel, France The talk, along with the questions and the context, can be found here: <pre>https://doi.org/10.5281/zenodo.2600527</pre>
DOI: 10.25345/c5mh55
title: MassIVE MSV000085092 - Proteomic analysis of the contribution of SH3 domains positioning to NCK2 interactome
title: This submission contains the mass spectrometry files for the manuscript by Ugo Dionne et al. that describes the functional characterization of NCK2 SH3 domains positions. To determine the contribution of NCK2 SH3 domains positioning to the protein interactions, we inter-changed the positions of its three SH3 domains. The interactome of each NCK2 chimeras was determined and compared to the WT or to a SH3 dead negative control. AP-MS experiments were performed from HEK293T cells and 36 MS files were acquired on a TripleTOF 5600+ mass spectrometer in data dependent and independent acquisition modes. Only the DIA files are associated with this deposition. Please refer to the individual Tables 1 for additional details of submitted files. For questions, please contact Jean-Philippe Lambert (Jean-Philippe.Lambert@crchudequebec.ulaval.ca) or Nicolas Bisson (nick.bisson@crchudequebec.ulaval.ca).
DOI: 10.6073/pasta/b357246b8d1ef4cd663922aada59c96d
title: NWFSC fish and invertebrate diversity derived from west coast groundfish trawl program

description: This dataset presents the community structure of groundfish and invertebrate in the West Coast since 1994. The community structure indices include the richness and Simpson’s evenness. The raw count data is from West Coast Groundfish Bottom Trawl survey conducted by the Northwest Fisheries Science Center. The spatial coverage of this dataset is between Pt Conception, California and north of U.S.-Mexico border.
DOI: 10.5281/zenodo.3707990
title: Data from MECO(n) model simulations on "Urban greenhouse gas emissions from the Berlin area: A case study using airborne CO2 and CH4 in situ observations in summer 2018"

description: This tar-files contain the results of the MECO(n) model, which are published in T. Klausner, M. Mertens, H. Huntrieser, M. Galkowski, G. Kuhlmann, R. Baumann, A. Fiehn, P. Jöckel, M. Pühl, and A. Roiger: Urban greenhouse gas emissions from the Berlin area: A case study using airborne CO<sub>2</sub> and CH<sub>4</sub> in situ observations in summer 2018, Elementa: Science of the Anthropocene (Ref.: Ms. No. ELEMENTA-D-19-00074R1), 2019.
DOI: 10.5281/zenodo.3707991
title: Data from MECO(n) model simulations on "Urban greenhouse gas emissions from the Berlin area: A case study using airborne CO2 and CH4 in situ observations in summer 2018"

description: This tar-files contain the results of the MECO(n) model, which are published in T. Klausner, M. Mertens, H. Huntrieser, M. Galkowski, G. Kuhlmann, R. Baumann, A. Fiehn, P. Jöckel, M. Pühl, and A. Roiger: Urban greenhouse gas emissions from the Berlin area: A case study using airborne CO<sub>2</sub> and CH<sub>4</sub> in situ observations in summer 2018, Elementa: Science of the Anthropocene (Ref.: Ms. No. ELEMENTA-D-19-00074R1), 2019.
DOI: 10.5281/zenodo.3708325
title: Reconciliation of regulatory data: the regulatory networks of Escherichia coli and Bacillus subtilis

description: The dataset hereby uploaded, presents state-of-art, reconciled transcriptional regulatory networks of <em>Escherichia coli </em>K12 MG1655<em> </em>and <em>Bacillus subtilis </em>str 168<em>. </em>The networks were reconciled through the retrieval and integration of relevant regulatory data from multiple resources, including databases, such as <em>RegulonDB </em>and <em>DBTBS</em> as well as available literature.