cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7488/ds/7858
title: Neural networks weights related to "Super-resolution of turbulence with dynamics in the loss"

description: A set of routines to train neural networks to perform super-resolution, without necessarily requiring high-resolution data, along with network weights used to generate figures in the publication "Super-resolution of turbulence with dynamics in the loss", (J. Page, Journal of Fluid Mechanics, accepted 2024). Implementation wraps around the spectral version of JAX-CFD (https://github.com/google/jax-cfd). Neural networks are written in Keras using the JAX backend. This dataset consists of a series of python scripts and .h5 files of network weights, organised into subdirectories: code/ # scripts used to train and analyse the networks (python, requires installation of keras + JAX backend, JAX-CFD) paper_weights/ # weights for the neural networks as documented in the paper. # subdirectories here point to different Reynolds numbers (100, 1000) with weights at M = 16 and M = 32 coarse-graining # an additional subdirectory includes networks trained with noisy data Neural network weights are saved as .h5 files. An example script is included ("load_weights.py") to illustrate how to load into a model.
description: Please see README file for details of directory structure, along with example scripts.
DOI: 10.6084/m9.figshare.c.3830014_d2.v1
title: Additional file 2: of Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

description: Gene set analysis of top CpG hits. Output of results from ORA analysis using Webgestalt. (XLSX 46.8 kb)
DOI: 10.6084/m9.figshare.c.3830014_d2
title: Additional file 2: of Differential methylation at MHC in CD4+ T cells is associated with multiple sclerosis independently of HLA-DRB1

description: Gene set analysis of top CpG hits. Output of results from ORA analysis using Webgestalt. (XLSX 46.8 kb)
DOI: 10.6084/m9.figshare.c.3830056_d1.v1
title: MOESM1 of Exploring anti-malarial potential of FDA approved drugs: an in silico approach

description: Additional file 1. Details on drug-target associations predicted for Plasmodium falciparum.
DOI: 10.5517/ccdc.csd.cc2dc622
title: CCDC 2215293: Experimental Crystal Structure Determination

description: Related Article: Jon Pascual-Colino, Quaid Johar Samun Virpurwala, Sandra Mena-Gutiérrez, Sonia Pérez-Yáñez, Antonio Luque, Garikoitz Beobide, Vijay K. Velisoju, Pedro Castaño, Oscar Castillo|2023|Inorg.Chem.|62|17444|doi:10.1021/acs.inorgchem.3c02830
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dc633
title: CCDC 2215294: Experimental Crystal Structure Determination

description: Related Article: Jon Pascual-Colino, Quaid Johar Samun Virpurwala, Sandra Mena-Gutiérrez, Sonia Pérez-Yáñez, Antonio Luque, Garikoitz Beobide, Vijay K. Velisoju, Pedro Castaño, Oscar Castillo|2023|Inorg.Chem.|62|17444|doi:10.1021/acs.inorgchem.3c02830
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2dc644
title: CCDC 2215295: Experimental Crystal Structure Determination

description: Related Article: Jon Pascual-Colino, Quaid Johar Samun Virpurwala, Sandra Mena-Gutiérrez, Sonia Pérez-Yáñez, Antonio Luque, Garikoitz Beobide, Vijay K. Velisoju, Pedro Castaño, Oscar Castillo|2023|Inorg.Chem.|62|17444|doi:10.1021/acs.inorgchem.3c02830
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdbbj
title: CCDC 2246177: Experimental Crystal Structure Determination

description: Related Article: Jon Pascual-Colino, Quaid Johar Samun Virpurwala, Sandra Mena-Gutiérrez, Sonia Pérez-Yáñez, Antonio Luque, Garikoitz Beobide, Vijay K. Velisoju, Pedro Castaño, Oscar Castillo|2023|Inorg.Chem.|62|17444|doi:10.1021/acs.inorgchem.3c02830
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2fdbck
title: CCDC 2246178: Experimental Crystal Structure Determination

description: Related Article: Jon Pascual-Colino, Quaid Johar Samun Virpurwala, Sandra Mena-Gutiérrez, Sonia Pérez-Yáñez, Antonio Luque, Garikoitz Beobide, Vijay K. Velisoju, Pedro Castaño, Oscar Castillo|2023|Inorg.Chem.|62|17444|doi:10.1021/acs.inorgchem.3c02830
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.5fp6ca
title: Occurrence Download

description: A dataset containing 7106 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Psilocybe semilanceata (Fr.) P.Kumm."
 ]
}

 The dataset includes 7106 records from 230 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039035-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3830071_d1.v1
title: Additional file 1: of Predictors of return to work among patients in treatment for common mental disorders: a pre-post study

description: Questionnaire to patients. Questions about socio-demographics, work situation and mental health answered by patients at the beginning and the end of treatment. (ZIP 86 kb)
DOI: 10.6084/m9.figshare.c.3830071_d1
title: Additional file 1: of Predictors of return to work among patients in treatment for common mental disorders: a pre-post study

description: Questionnaire to patients. Questions about socio-demographics, work situation and mental health answered by patients at the beginning and the end of treatment. (ZIP 86 kb)
DOI: 10.6084/m9.figshare.c.3830071_d3.v1
title: Additional file 3: of Predictors of return to work among patients in treatment for common mental disorders: a pre-post study

description: Questionnaire to therapists 2. Questions about mental health status and treatment content, answered by therapists at the end of treatment. (ZIP 43 kb)
DOI: 10.6084/m9.figshare.c.3830071_d2
title: Additional file 2: of Predictors of return to work among patients in treatment for common mental disorders: a pre-post study

description: Questionnaire to therapists 1. Questions about diagnosis, work situation and treatment history, answered by therapists at the beginning of treatment. (ZIP 38 kb)
DOI: 10.6084/m9.figshare.c.3830071_d3
title: Additional file 3: of Predictors of return to work among patients in treatment for common mental disorders: a pre-post study

description: Questionnaire to therapists 2. Questions about mental health status and treatment content, answered by therapists at the end of treatment. (ZIP 43 kb)
DOI: 10.6084/m9.figshare.c.3830095_d2
title: Additional file 2: Appendices 3a of Unravelling functional neurology: a scoping review of theories and clinical applications in a context of chiropractic manual therapy

description: Description of 11 peer-reviewed articles on Functional Neurology included in a scoping review. 3b. Clinical information from websites of chiropractors using Functional Neurology. 3c. Clinical information on the use of Functional Neurology (FN) from semi-structured interviews of chiropractors proficient in its use [62â  66]. (ZIP 78Â kb)
DOI: 10.15468/dl.k9q4s5
title: Occurrence Download

description: A dataset containing 21 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathymaster signatus Cope, 1873",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 21 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039036-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3830116_d10.v1
title: Additional file 6: Table S2. of Association between genome-wide copy number variation and arsenic-induced skin lesions: a prospective study

description: Results from all the 1135 Cox regression models with HR and 95%CI of all the variables (genomic segment, gender, age and UACR). (XLS 1116Â kb)
DOI: 10.6084/m9.figshare.c.3830116_d10
title: Additional file 6: Table S2. of Association between genome-wide copy number variation and arsenic-induced skin lesions: a prospective study

description: Results from all the 1135 Cox regression models with HR and 95%CI of all the variables (genomic segment, gender, age and UACR). (XLS 1116Â kb)
DOI: 10.6084/m9.figshare.28053164
title: HPWO

description: The project is the supporting material for the paper "HPWO Model: A Housing Price Weighted Opportunity Model for Heterogeneous Human Mobility".
DOI: 10.6084/m9.figshare.28053164.v1
title: HPWO

description: The project is the supporting material for the paper "HPWO Model: A Housing Price Weighted Opportunity Model for Heterogeneous Human Mobility".
DOI: 10.6084/m9.figshare.c.3831184_d1.v1
title: Additional file 10: of Genome analysis of E. coli isolated from Crohnâ  s disease patients

description: Antibiotics susceptibility test of CD isolates (see Materials and Methods). (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3831184_d1
title: Additional file 10: of Genome analysis of E. coli isolated from Crohnâ  s disease patients

description: Antibiotics susceptibility test of CD isolates (see Materials and Methods). (XLS 29Â kb)
DOI: 10.6084/m9.figshare.c.3831184_d9.v1
title: Additional file 6: of Genome analysis of E. coli isolated from Crohnâ  s disease patients

description: Multi locus sequence types (MLST) were determined by the sequence of seven housekeeping genes with web server mlst.warwick.ac.uk [48]. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3831184_d9
title: Additional file 6: of Genome analysis of E. coli isolated from Crohnâ  s disease patients

description: Multi locus sequence types (MLST) were determined by the sequence of seven housekeeping genes with web server mlst.warwick.ac.uk [48]. (XLS 17Â kb)
DOI: 10.6084/m9.figshare.c.3831184_d11
title: Additional file 8: of Genome analysis of E. coli isolated from Crohn’s disease patients

description: Comparison of the OG content of CD-isolates and commensal strains. Columns: OG – orthologous group number; Function – orthologous group function; gene group / global function – function of the operon or a major pathway in which OG participates; crohnall.yes − number of genomes from CrohnAll group containing the OG; crohnall.no − number of genomes from CrohnAll group not containing the OG; commensal.yes − number of genomes from commensal group containing the OG; commensal.no − number of genomes from commensal group not containing the OG; pvalues – Fisher’s test p-value; pvalues.adj – p-value after Holm’s adjustment; CD% / commensal % = % of CD genomes containing the subject OG divided by % of commensal strains containing the subject OG. (XLS 1813 kb)
DOI: 10.6084/m9.figshare.c.3831184_d11.v1
title: Additional file 8: of Genome analysis of E. coli isolated from Crohn’s disease patients

description: Comparison of the OG content of CD-isolates and commensal strains. Columns: OG – orthologous group number; Function – orthologous group function; gene group / global function – function of the operon or a major pathway in which OG participates; crohnall.yes − number of genomes from CrohnAll group containing the OG; crohnall.no − number of genomes from CrohnAll group not containing the OG; commensal.yes − number of genomes from commensal group containing the OG; commensal.no − number of genomes from commensal group not containing the OG; pvalues – Fisher’s test p-value; pvalues.adj – p-value after Holm’s adjustment; CD% / commensal % = % of CD genomes containing the subject OG divided by % of commensal strains containing the subject OG. (XLS 1813 kb)
DOI: 10.6084/m9.figshare.c.3831232_d3.v1
title: Additional file 3: Table S1. of Novel Plasmodium falciparum metabolic network reconstruction identifies shifts associated with clinical antimalarial resistance

description: Modifications and reaction additions in iPfal17 curation. Table S2. Reactions deleted from Plata et al. model (iTH366) in generating iPfal17. Table S3. Predicted lethal reactions in wild-type blood-stage Plasmodium falciparum. Table S4: Predicted lethal genes in wild-type blood-stage Plasmodium falciparum. Table S5. Consensus predicted lethal reactions across 4 expression-constrained models. Table S6. PlasmoGem orthologous results. Table S7: Extended Table 4. Table S8. Microarray platform blast results. Table S9: Metabolites in the in silico extracellular environment. (XLSX 1104Â kb)
DOI: 10.6084/m9.figshare.c.3831232_d3
title: Additional file 3: Table S1. of Novel Plasmodium falciparum metabolic network reconstruction identifies shifts associated with clinical antimalarial resistance

description: Modifications and reaction additions in iPfal17 curation. Table S2. Reactions deleted from Plata et al. model (iTH366) in generating iPfal17. Table S3. Predicted lethal reactions in wild-type blood-stage Plasmodium falciparum. Table S4: Predicted lethal genes in wild-type blood-stage Plasmodium falciparum. Table S5. Consensus predicted lethal reactions across 4 expression-constrained models. Table S6. PlasmoGem orthologous results. Table S7: Extended Table 4. Table S8. Microarray platform blast results. Table S9: Metabolites in the in silico extracellular environment. (XLSX 1104Â kb)
DOI: 10.15468/dl.fd4tsx
title: Occurrence Download

description: A dataset containing 0 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja abyssicola (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 0 records from 0 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039037-241126133413365/datasets/export for details.
DOI: 10.6084/m9.figshare.c.3831274_d2.v1
title: Additional file 2: of Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability

description: Knowledge-driven analysis results. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3831274_d2
title: Additional file 2: of Novel promoters and coding first exons in DLG2 linked to developmental disorders and intellectual disability

description: Knowledge-driven analysis results. (XLSX 13 kb)
DOI: 10.6084/m9.figshare.c.3832306_d2.v1
title: Additional file 1: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The list of sampled trees and their phenotypes. (XLSX 146Â kb)
DOI: 10.6084/m9.figshare.c.3832312_d2
title: MOESM2 of Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming

description: Additional file 2. Models and scripts. Archive containing the model and scripts used for the experiments. Available at https://www.lri.fr/~pauleve/additional_file_2.zip .
DOI: 10.6084/m9.figshare.c.3832306_d2
title: Additional file 1: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The list of sampled trees and their phenotypes. (XLSX 146Â kb)
DOI: 10.6084/m9.figshare.c.3832306_d5.v1
title: Additional file 4: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The sequences and statistics for the high quality and most informative SNPs used in the GWAS. (XLSX 1080Â kb)
DOI: 10.6084/m9.figshare.c.3832348_d1.v1
title: MOESM1 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 1. http://rnomics.med.usherbrooke.ca/palace?purl=pcrreactiongroup/list/299 . Genomics Platform-Palace: Overview Page.
DOI: 10.6084/m9.figshare.c.3832306_d5
title: Additional file 4: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The sequences and statistics for the high quality and most informative SNPs used in the GWAS. (XLSX 1080Â kb)
DOI: 10.6084/m9.figshare.c.3832348_d1
title: MOESM1 of Splicing arrays reveal novel RBM10 targets, including SMN2 pre-mRNA

description: Additional file 1. http://rnomics.med.usherbrooke.ca/palace?purl=pcrreactiongroup/list/299 . Genomics Platform-Palace: Overview Page.
DOI: 10.6084/m9.figshare.c.3832306_d6.v1
title: Additional file 5: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The list of mapped SNPs in 12 linkage groups (LGs). (XLSX 91Â kb)
DOI: 10.5281/zenodo.3653165
title: S25 | OECDPFAS | List of PFAS from the OECD

description: This is the collection associated with list S25 OECDPFAS on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ S25 OECDPFAS <strong>List of PFAS from the OECD</strong> OECD PFAS Original List (20/06/2018)<br> OECD PFAS CompTox XLSX (22/01/2019)<br> CompTox PFASOECD List OECD PFAS CompTox InChIKeys (22/01/2019) A list of PFAS released by the OECD, provided by Zhanyun Wang. Details in this OECD Monograph. Extensive registration and curation performed by CompTox Dashboard team (see CompTox files). Nov 14 update: added CSV. Feb 6, 2020: minor SMILES corrections in CSV for PubChem upload.
description: For more details and authorship information see OECD Monograph
DOI: 10.5281/zenodo.6348990
title: S25 | OECDPFAS | List of PFAS from the OECD

description: This is the collection associated with list S25 OECDPFAS on the NORMAN Suspect List Exchange. https://www.norman-network.com/nds/SLE/ S25 | OECDPFAS | <strong>List of PFAS from the OECD</strong> A list of PFAS released by the OECD, provided by Zhanyun Wang. Details in this OECD Monograph. Extensive registration and curation performed by CompTox Dashboard team (see CompTox files). Nov 14 update: added CSV. Feb 6, 2020: minor SMILES corrections in CSV for PubChem upload. 12 Mar 2022: corrected structure for DTXSID90703694.
description: For more details and authorship information see OECD Monograph
DOI: 10.6084/m9.figshare.c.3832306_d8.v1
title: Additional file 7: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The statistics for Fisher exact test and Logistic regression test. (XLSX 4534Â kb)
DOI: 10.6084/m9.figshare.c.3832306_d8
title: Additional file 7: of Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

description: The statistics for Fisher exact test and Logistic regression test. (XLSX 4534Â kb)
DOI: 10.15468/dl.mur2hq
title: Occurrence Download

description: A dataset containing 874 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alvinella pompejana Desbruyères & Laubier, 1980"
 ]
}

 The dataset includes 874 records from 16 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039039-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.j4q3g8
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Bathyraja aleutica (Gilbert, 1896)",
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "OccurrenceStatus is Present",
 "Year is greater than or equal to 1900",
 "CoordinateUncertaintyInMeters is less than or equal to 10000"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039041-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3832375_d1.v1
title: Additional file 1: of The potential value of serum pepsinogen for the diagnosis of atrophic gastritis among the health check-up populations in China: a diagnostic clinical research

description: Datasets in more detail. The first column refers to the group: the number “0” represents the “non atrophic group (NAG)”, the number “1” represents the “mild-moderate atrophic group (MAG)”, and the number “4” represents the “severe atrophic group (SAG)”. The second column refers the age of patients. The third column refers the condition of Helicobacter pylori infection. The number “1” represents “Hp positive”, and the number “0” represents “Hp negative”. The last three columns refers the PGI levels, PGII levels and the PGI/PGII ratio. (XLS 3615 kb)
DOI: 10.6084/m9.figshare.c.3832375_d1
title: Additional file 1: of The potential value of serum pepsinogen for the diagnosis of atrophic gastritis among the health check-up populations in China: a diagnostic clinical research

description: Datasets in more detail. The first column refers to the group: the number “0” represents the “non atrophic group (NAG)”, the number “1” represents the “mild-moderate atrophic group (MAG)”, and the number “4” represents the “severe atrophic group (SAG)”. The second column refers the age of patients. The third column refers the condition of Helicobacter pylori infection. The number “1” represents “Hp positive”, and the number “0” represents “Hp negative”. The last three columns refers the PGI levels, PGII levels and the PGI/PGII ratio. (XLS 3615 kb)
DOI: 10.15468/dl.mc2qhy
title: Occurrence Download

description: A dataset containing 7155 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Bowlesia incana Ruiz & Pav."
 ]
}

 The dataset includes 7155 records from 237 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0039040-241126133413365/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.c.3832408_d2.v1
title: Additional file 2: Table S1. of Genetic structure and gene flow of the flea Xenopsylla cheopis in Madagascar and Mayotte

description: Estimated frequencies of null alleles per locus per population using Van Oosterhout’s method. (XLSX 10 kb)
DOI: 10.6084/m9.figshare.c.3832408_d2
title: Additional file 2: Table S1. of Genetic structure and gene flow of the flea Xenopsylla cheopis in Madagascar and Mayotte

description: Estimated frequencies of null alleles per locus per population using Van Oosterhout’s method. (XLSX 10 kb)