cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.17632/zp6d5w8kdv.1
title: Data from: Sub-cone visual resolution by active, adaptive sampling in the human foveola

description: Cone mosaic images, cone coordinates, retinal locations (PCD, CDC and PRL) and eye motion trajectories are related to: Witten et al., Sub-cone visual resolution by active, adaptive sampling in the human foveola, eLife (2024), https://doi.org/10.7554/eLife.98648.1
A MATLAB code that can be used for plotting the data on the original image is provided. 

Abstract:
The foveated architecture of the human retina and the eye’s mobility enable prime spatial vision, yet the interplay between photoreceptor cell topography and the constant motion of the eye during fixation remains unexplored. With in vivo foveal cone-resolved imaging and simultaneous microscopic photo stimulation, we examined visual acuity in both eyes of 16 participants while precisely recording the stimulus path on the retina. We find that resolution thresholds were correlated with the individual retina’s sampling capacity, and exceeded what static sampling limits would predict by 18 %, on average. The length and direction of fixational drift motion, previously thought to be primarily random, played a key role in achieving this sub-cone diameter resolution. The oculomotor system finely adjusts drift behavior towards retinal areas with higher cone densities within only a few hundred milliseconds to enhance retinal sampling.


Additional information about previous scientific projects and ongoing research can be found on our website: https://ao.ukbonn.de/
DOI: 10.17632/gtvgj9ctfd.1
title: The results of the laboratory analysis of Cores EMB058-6-4 and EMB058-16-6 from Arkona Basin

description: The results of the laboratory analysis for the article: "Spatial variability of Holocene sediments in light multidisciplinary studies of cores from the Arkona Basin, south-western Baltic Sea"
DOI: 10.17632/j94grxxkm5.1
title: Vulnerability

description: Strutural, economic and social data collected in dairy farms located at Parana State, Brazil
DOI: 10.17632/j94grxxkm5.2
title: Vulnerability

description: Strutural, economic and social data collected in dairy farms located at Parana State, Brazil
DOI: 10.17632/j94grxxkm5.4
title: Vulnerability

description: Strutural, economic and social data collected in dairy farms located at Parana State, Brazil
DOI: 10.17632/j94grxxkm5.3
title: Vulnerability

description: Strutural, economic and social data collected in dairy farms located at Parana State, Brazil
DOI: 10.17632/bxn5xn4x5c.1
title: Leishmania donovani (HU3) gene models

description: This dataset consists of a gtf file containing information to locate all genes (coding and non-coding) that have been annotated to date in the L. donovani (HU3 strain) genome. The genome sequence and gene annotation for this species were determined by Camacho et al (PMID: 30992521), but annotations for several protein-coding genes were improved after the analysis of Ribo-seq data (PMID: 37628688). This updated annotation has also been deposited at ENA (GCA_900635355.2)
DOI: 10.17632/bxn5xn4x5c.2
title: Leishmania donovani (HU3) gene models

description: This dataset includes two files. By one hand, a Fasta file with the sequences of all gene models (coding and non-coding) that have been annotated to date in the L. donovani (HU3 strain) genome. By the other hand, a gtf file containing information to locate all genes on the L. donovani (HU3 strain) genome (https://data.mendeley.com/datasets/b82fm2w2h9/2). The genome sequence and gene annotations for this species were determined by Camacho et al (PMID: 30992521), but annotations for several protein-coding genes were improved after the analysis of Ribo-seq data (PMID: 37628688) and proteomic analyses (PMID: 38927711). This updated annotation has also been deposited at ENA (GCA_900635355.2)
DOI: 10.17632/627k8vj246.3
title: Lipidomics Profiling of falciparum malaria in Burkina Faso

description: This study investigates the lipidome profiles manifested in human serum samples originating from 198 west African children from three independent ethnic groups in Burkina Faso, collected before and during P. falciparum malarial infection, with the aim of characterizing lipid metabolism perturbations associated with disease severity. Untargeted lipidomic profiling was performed using complex lipid platform at Metabolon Inc. (Durham, NC, USA).
DOI: 10.17632/8g93t6n9zs.1
title: LDHU3_17.2000

description: L-galactonolactone oxidase | ALO; Leishmania donovani (HU3 strain)
DOI: 10.15468/dl.efcutc
title: Occurrence Download

description: A dataset containing 149 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "RecordedBy is one of (Zubia, I. Zubia)",
 "StateProvince is one of (Logroño, Lo)"
 ]
}

 The dataset includes 149 records from 3 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004331-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/w5pn2t97bx.2
title: Data of Prevalence of Healthcare-Associated Infections in Ukraine During the 2009–2022 Period

description: Data on the prevalence of Healthcare-associated infections (HAIs) in Ukraine during 2009-2022. Official statistical data of the Ministry of Health of Ukraine, provided for scientific purposes.
DOI: 10.15468/dl.juwrz3
title: Occurrence Download

description: A dataset containing 128724 species occurrences available in GBIF matching the query:
{
 "and" : [
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Protanthea simplex Carlgren, 1891, Sabella pavonina Savigny, 1822, Geodia barretti Bowerbank, 1858, Mycale lingua (Bowerbank, 1866), Polycarpa pomaria (Savigny, 1816), Spirobranchus triqueter (Linnaeus, 1758), Hydroides norvegica Gunnerus, 1768, Serpula vermicularis Linnaeus, 1767, Placostegus tridentatus (Fabricius, 1779), Protula tubularia (Montagu, 1803), Apomatus globifer Théel, 1878, Chitinopoma serrula (Stimpson, 1853), Filograna implexa Berkeley, 1835, Molgula citrina Alder & Hancock, 1848, Molgula complanata Alder & Hancock, 1870, Ascidia mentula Müller, 1776, Ascidia virginea Müller, 1776, Ascidia obliqua Alder, 1863, Ascidia callosa Stimpson, 1852, Ascidia prunum Müller, 1776, Ciona intestinalis (Linnaeus, 1767), Porania pulvillus (O.F.Müller, 1776), Acesta excavata (J.C.Fabricius, 1779), Urticina felina (Linnaeus, 1761), Urticina eques (Gosse, 1858), Bolocera tuediae (Johnston, 1832), Munida rugosa (Fabricius, 1775), Munida sarsi Huus, 1935, Phakellia ventilabrum (Linnaeus, 1767), Lithodes maja (Linnaeus, 1758), Caryophyllia smithii Stokes & Broderip, 1828, Alcyonium digitatum Linnaeus, 1758)",
 "Year 2000-2020"
 ]
}

 The dataset includes 128724 records from 344 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0004319-250117142028555/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/pjwgv6svfv.1
title: Characteristics of raw milk microbiota during transportation from a Chinese farm derived by 16S rRNA gene sequencing

description: Microbial diversity in raw milk
DOI: 10.17632/gtvgj9ctfd.2
title: The results of the laboratory analysis of Cores EMB058-6-4 and EMB058-16-6 from Arkona Basin

description: The results of the laboratory analysis for the article: "Spatial variability of Holocene sediments in light studies of cores from the Arkona Basin, south-western Baltic Sea"
DOI: 10.17632/rb44gw8kms.1
title: Equações de chuvas intensas para o Brasil: Cerrado

description: Compilação de 1.443 equações de chuvas intensas para Cerrado do Brasil. Inclui equações estabelecidas usando dados de chuva: a) pluviográficos, em escala temporal sub-diária (Método padrão), e, b) pluviométricos - lâmina máxima diária (Método da Desagregação de Chuva).

Conteúdos de cada pasta:
1. Arquivos XLSX: duas planilhas, uma contendo as curvas estabelecidas usando dados pluviográficos (1a) e outra contendo as curvas estabelecidas usando dados desagregados (1b).
2. Um arquivo vetorial de pontos no formato "geopackage": inclui duas camadas vetoriais (uma para cada tipo de equação). As informações são as mesmas dos arquivos XLSX, mas estão associadas a uma posição espacial.
3. Dois arquivos vetoriais de pontos no formato "shapefile": dois shapefiles separados e compactados no formato RAR - um para as equações pluviográficas (3a) e outro para as desagregadas (3b). As informações são as mesmas dos arquivos XLSX, mas estão associadas a uma posição espacial.
4. Dois arquivos vetoriais de pontos no formato "geojson": dois arquivos separados - um para as equações pluviográficas (4a) e outro para as desagregadas (4b). As informações são as mesmas dos arquivos XLSX, mas estão associadas a uma posição espacial.


Descrição técnica: 
Sistema de Coordenadas Geográficas: WGS_1984 
Datum: WGS_1984 
Unidade: Graus
DOI: 10.17632/dfr5h8rhns.1
title: GISDicCoup

description: This dataset corresponds the experiments mentioned in the article "A directional coupler for partial discharge measurements in gas-insulated substations". In the head of each column it can be found the corresponding Figure, subplot and the variable measured. The description of how the data was gathered can be found in the same paper. 
The data corresponding to Figures 17 and 20 are the raw pulse measurements (in the time domain) for each estimated charge shown in these figures.
DOI: 10.17632/9sxb6sjv6r.1
title: To each their own! Nectar plasticity within a flower mediates distinct ecological interactions

description: This dataset was collected and used in the paper 'To each their own! Nectar plasticity within a flower mediates distinct ecological interactions', by Hannelise de Kassia Balduino, Priscila Tunes, Emanuele Giordano, Massimo Guarnieri, Silvia Rodrigues Machado, Massimo Nepi, and Elza Guimarães. AoB Plants.
DOI: 10.17632/r3ydrmryzg.1
title: An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges: Leucosolenia

description: Data stored here support the conclusions presented in the publication "An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges". Lecucosolenia corallorrhiza (class Calcarea) possesses several types of proliferating cells with food-entrapping cells - choanocytes - serving as the main proliferative population of cells. The less proliferative cell populations are represented by epithelial-like pinacocytes and porocytes. Using various experimental techniques, we revealed that choanoderm of L. corallorrhiza harbours large population of clowly cycling choanocytes.
CLSM Z-stacks are stored in .ims format, represented by the original image as well as spots used to count nuclei/EdU-positive nuclei.
Folder "EdU accumulation" contains CLSM Z-stacks of sponges treated with EdU for 2 h and 6 h ("Cell cycle dynamics" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "Growth fraction" contains CLSM Z-stacks of sponges treated with 1 mkg/ml of aphidicolin for 4.5 days followed by 6 h of EdU incubation ("Estimating the growth fraction" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "G2-M analysis (colocalization study)" contains CLSM Z-stacks of sponges after EdU treatment of different length ("G2/M-phase analysis" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); anti-Ser10-phosphorylated histone 3 antibodies (channel 4; M-phase nuclei).
Folder "Proliferating cell types" contains CLSM Z-stacks of sponges after CellTracker incubation and 6 hours of EdU treatment ("Identifying proliferating cell types" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); CellTracker Deep Red (channel 4; cytoplasm).
Folder "Flow cytometry data" contains raw .csv data obtained during flow cytometry analysis of DNA content in single-cell suspensions after ACME dissocitation of intact tissues. Suspensions are stained by Propidium Iodide (PE-A channel).
DOI: 10.17632/7fbv46wsnv.1
title: An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges: Halisarca

description: Data stored here support the conclusions presented in the publication "An experimental approach in analyzing the cell cycle dynamics of food-entrapping cells of sponges". Halisarca dujardinii (class Demospongiae) possesses two types of proliferating cells with food-entrapping cells - choanocytes - serving as the main proliferative population of cells. The second (and less proliferative) cell population is represented by amoeboid mesohyl cells commonly called archaeocytes. Using various experimental techniques, we revealed that choanoderm of H. dujardinii harbours large population of clowly cycling choanocytes.
CLSM Z-stacks are stored in .ims format, represented by the original image as well as spots used to count nuclei/EdU-positive nuclei.
Folder "EdU accumulation" contains CLSM Z-stacks of sponges treated with EdU for 2 h and 6 h ("Cell cycle dynamics" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "Growth fraction" contains CLSM Z-stacks of sponges treated with 1 mkg/ml of aphidicolin for 4.5 days followed by 12 h of EdU incubation ("Estimating the growth fraction" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei).
Folder "G2-M analysis (colocalization study)" contains CLSM Z-stacks of sponges after EdU treatment of different length ("G2/M-phase analysis" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); anti-Ser10-phosphorylated histone 3 antibodies (channel 4; M-phase nuclei).
Folder "Proliferating cell types" contains CLSM Z-stacks of sponges after CellTracker incubation and 12 hours of EdU treatment ("Identifying proliferating cell types" experiment). Tissues are stained with DAPI (channel 1; cell nuclei), anti-acetylated alpha-tubulin antibodies (channel 2; choanocyte flagella); Sulfo-Cy3 azide + EdU (channel 3; S-phase nuclei); CellTracker Deep Red (channel 4; cytoplasm).
Folder "Flow cytometry data" contains raw .csv data obtained during flow cytometry analysis of DNA content in single-cell suspensions after ACME dissocitation of intact tissues. Suspensions are stained by Propidium Iodide (PE-A channel).
DOI: 10.17632/36mk4cvhcb.1
title: PEPE study

description: Data set for the Profiles and expectations of seniors to achieve a successful retirement. The PEPE-Cohort study
DOI: 10.17632/x9ppd3b8nd.1
title: LINF_330018100

description: chloride channel protein | VCL2; Leishmania infantum (strain JPCM5)
DOI: 10.17632/mb7kc25ysv.1
title: LINF_330016100

description: protein of unknown function - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.5281/zenodo.14699286
title: Radial dependence of SEP peak fluxes and fluences: Multi-spacecraft observations based on Parker Solar Probe, Solar Orbiter, and near-Earth particle detectors
DOI: 10.5281/zenodo.14699287
title: Radial dependence of SEP peak fluxes and fluences: Multi-spacecraft observations based on Parker Solar Probe, Solar Orbiter, and near-Earth particle detectors
DOI: 10.17632/8f66v4vzj8.1
title: LINF_330017600

description: PSP1-like protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/rm85m26b6d.1
title: LINF_330007900

description: Peroxisomal membrane protein; Leishmania infantum (strain JPCM5)
DOI: 10.17632/gn3xmd7td4.1
title: LINF_330008100

description: hypothetical protein - conserved; Leishmania infantum (strain JPCM5)
DOI: 10.17632/zgcxpcv3m9.1
title: LINF_330019400

description: Axonemal dynein light chain; Leishmania infantum (strain JPCM5)
DOI: 10.17632/48d3f86rbg.1
title: Tables S1-S8-new

description: Here we analyzed C19-C23 tricyclci terpanes of 485 oil and sediment samples from a variety of formations with well characterized depositional environments spanning in age from the late Paleozoic to Neogene. The distribution of C19+C20, C21 and C23 cheilanthanes in ternary diagram has high predictive power to differentiate between marine/saline lacustrine, freshwater lacustrine, swamp and fluvial/deltaic depositional environments.
DOI: 10.17632/pthxwdtfzz.1
title: Fe isotope and selected trace element data for Deming Lake, MN, USA

description: Contains research data associated with the manuscript entitled 'Iron Cycling and Isotopic Fractionation in a Ferruginous, Seasonally Ice-Covered Lake'
DOI: 10.17632/k7m3gnswdj.1
title: Data from: Solar heating may explain extreme diel flight altitude changes in migrating birds

description: Great reed warblers Acrocephalus arundinaceus and great snipes Gallinago media exhibit a diel cycle in flight altitudes, flying much higher during day than night, when performing migratory flights covering both night and day (Fig 1). One hypothesis proposed to explain this behaviour is that the birds face additional heating by solar radiation during daytime and hence must climb to very high, and thus also very cold, altitudes to avoid overheating during daytime flights. Yet, solar heat gain in birds has been shown to drastically decrease with wind speed, and the quantitative heating effect by solar radiation on a bird flying with an airspeed of 10 m/s or more, is unknown. We analysed temperature data from multisensor data loggers placed without direct exposure to solar radiation on great reed warblers (the logger covered by feathers on the back) and great snipes (the logger on the leg, covered from the sun by the tail). We found that logger temperatures were significantly higher (5.9–8.8 °C in great reed warblers and 4.8–5.4 °C in great snipes) during the day than during the night, in birds flying at the same altitudes (and thus also the same expected ambient air temperatures; Tables 1, 2; Fig 2). These results strongly indicate that the heat balance of the flying birds is indeed affected by solar radiation, which is in accordance with the hypothesis that solar radiation is a key factor causing the remarkable diel cycles in flight altitude observed in these two long-distance migrant bird species.

This dataset contains all data included in the figures and analyses included in the published paper:

Sjöberg et al., Solar heating may explain extreme diel flight altitude changes in migrating birds, Current Biology (2023), https://doi.org/10.1016/j.cub.2023.08.035
DOI: 10.17632/h4v7srkpc2.1
title: Faults in Southern Vietnam - implications for extrusion of Indochina

description: These data include structural measurements of faults in southern Vietnam, including slickenside measurements where possible. Fault data are given as strike and dip, reported in the right hand rule convention, collected over two field campaigns using a Brunton compass. A second file is lineament data generated from ArcMap, given as strike of lineaments and separated into blocks, to enable Figure 5 in the associated paper to be reproduced. Lastly, we archive the geochemical dataset from the Ar-Ar dating of a key sample from the OSU Argon Geochronology Laboratory. We find that fault and lineament orientations in different lithospheric-scale, fault-bounded blocks are distinct from one another, implying that the different blocks are moving discretely with respect to one another. We suggest that this disintegration of southern Vietnam into smaller blocks is a natural result of continued extrusion where a free surface is no longer present.
DOI: 10.17632/h4v7srkpc2.2
title: Faults in Southern Vietnam - implications for extrusion of Indochina v2

description: These data include structural measurements of faults in southern Vietnam, including slickenside measurements where possible. Fault data are given as strike and dip, reported in the right hand rule convention, collected over three field campaigns using a Brunton compass. An additional file is lineament data generated from ArcMap, given as strike of lineaments and separated into blocks, to enable Figure 5 in the associated paper to be reproduced. For consistency, this file includes the lineament data for the published studies included in Figure 5. We include the dataset for T/P axes generated from FaultKin to allow Figure 7 to be reproduced. Lastly, we archive the geochemical dataset from the Ar-Ar dating of a key sample from the OSU Argon Geochronology Laboratory. We find that fault and lineament orientations in different lithospheric-scale, fault-bounded blocks (microblocks) are distinct from one another, implying that the different microblocks are moving discretely with respect to one another (continuum rubble tectonics). We suggest that this disintegration of southern Vietnam into smaller blocks is a natural result of continued extrusion where a free surface is no longer present.
DOI: 10.17632/8hjmjsxkw9.1
title: Tillandsia landbeckii is securing high phenotypic plasticity and population fitness via clonal propagation at the dry limits of plant life in the Chilean Atacama Desert

description: Sarina Jabbusch, Marcus A. Koch*

*Correspondence: Marcus A. Koch, marcus.koch@cos.uni-heidelberg.de

General description of data

Tillandsia landbeckii is an epiarenically (on sand and without roots) growing Bromeliaceae from the Atacama Desert. We gathered genetic (genotyping-by-sequencing) as well as phenotypic data. The phenotypic data included growth rate, leaf length and stem diameter of one Tillandsia landbeckii population. Growth rate and leaf length were collected from nine study plots distributed across the population at different elevations and with different vegetation densities. This data was gathered for one year in situ in the Atacama Desert and for two years ex situ at Heidelberg Botanic Garden with T. landbeckii plants collected from the nine study plots. Leaf length and stem diameter were measured across the whole T. landbeckii population in addition to the phenotypic measurements in the nine plots.
With the genetic data, we determined the genetic diversity in the Tillandsia landbeckii population, assigned genetic variation into genepools and characterized clonally distributed individuals and their respective frequency.
In combination with the phenotypic data, we evaluated which effect genetic and phenotypic variability in concert have on the fitness of the T. landbeckii population.
Furthermore, the phenotypic field data are used to compare growth rates and leaf length under differing environmental conditions and to evaluate seasonal differences in the growth rate. 

The file explanation.docx will provide details about data files and scripts.
DOI: 10.17632/tb6xfd7bh2.1
title: Data from: Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of Drosophila melanogaster

description: Data used in the manuscript "Mate copying requires the coincidence detector Rutabaga in the mushroom bodies of Drosophila melanogaster"