cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.2060433.v1
title: data- inhibitions of NA/5-HT transmissions against alcoholism

description: Raw data obtained in behavioral sensitization to amphetamine and alcohol experimental procedure: effect of ifenprodil (1 mg/kg) and cyproheptadine (1 mg/kg) in C57Bl6 mice and to alcohol in DBA2 mice. Raw data obtained in alcohol intake procedure in mice habituated to alcohol (10 % v/v). <br>
DOI: 10.6084/m9.figshare.2060439.v1
title: Auxiliary File 2 for Reanalysis of Flood of Record Using HEC-2, FEC-RAS, and USGS Gage Data

description: A US Army Corps of Engineers HEC-2 input file in ASCII text format suitable for input into HEC-RAS.<br>
DOI: 10.6084/m9.figshare.2060229
title: 3D architecture of the Trypanosoma brucei flagella connector, a mobile transmembrane junction

description: Electron tomograms of the flagella connector structure. <br>Two tomograms are on chemically fixed FCs (chem_fix1_1.rec and gull67m.join). <br>Three tomograms are of high pressure frozen FCs (connector3.join, connector5_modeled.join and connector6_1.rec). <br>One tomogram is of frozen hydrated sections (frozen_hydrated_sections_serial_tomogram_flagella_connector.join), also called CEMOVIS, and is to our knowledge the first published serial section CEMOVIS. <br><br>The .recs are single electron tomographic reconstructions. The .joins consist of serial tomograms that has been joined in the z-axis.<br><br>The paper can be found with the following DOI: 10.1371/journal.pntd.0004312 <br><br>
DOI: 10.6084/m9.figshare.2060184
title: Tieknot grammar brochure

description: This is a brochure illustrating the notation used in More ties than we thought (2015) PeerJ Computer Science DOI: 10.7717/peerj-cs.2
DOI: 10.6084/m9.figshare.2060229.v1
title: 3D architecture of the Trypanosoma brucei flagella connector, a mobile transmembrane junction

description: Electron tomograms of the flagella connector structure. <br>Two tomograms are on chemically fixed FCs (chem_fix1_1.rec and gull67m.join). <br>Three tomograms are of high pressure frozen FCs (connector3.join, connector5_modeled.join and connector6_1.rec). <br>One tomogram is of frozen hydrated sections (frozen_hydrated_sections_serial_tomogram_flagella_connector.join), also called CEMOVIS, and is to our knowledge the first published serial section CEMOVIS. <br><br>The .recs are single electron tomographic reconstructions. The .joins consist of serial tomograms that has been joined in the z-axis.<br><br>The paper can be found with the following DOI: 10.1371/journal.pntd.0004312 <br><br>
DOI: 10.6084/m9.figshare.2060184.v1
title: Tieknot grammar brochure

description: This is a brochure illustrating the notation used in More ties than we thought (2015) PeerJ Computer Science DOI: 10.7717/peerj-cs.2
DOI: 10.6084/m9.figshare.2060427.v1
title: Auxiliary File for "Reanalysis of Flood of Record Using HEC-2, FEC-RAS, and USGS Gage Data"

description: This file is a scan of a US Army Corps of Engineers HEC-2 input file for the Conestoga River, Lancaster County, Pennsylvania. The scan was obtained from the FEMA Engineering Library, Alexandria, VA.<br>
DOI: 10.6084/m9.figshare.2060052
title: Files in the National Archives of Australia withheld from public access in 2015

description: This CSV file contains details of records held by the National Archives of Australia that were examined for release but withheld from public access in 2015. These files have an access status of 'Closed' in the NAA's online database.<br>The data of all files with an access status of 'Closed' was harvested from the NAA database on 1 January 2016. This was then filtered down to those with an access decision recorded sometime in 2015.<br>It's planned to make similar datasets available on an annual basis.<br>The fields in the CSV file are: barcode, control symbol, title, series, series title, contents dates, contents start year, contents end year, access status, access decision reasons (multiple values), access decision date (iso formatted).<br>The contents start year and end year have been parsed out of the original date string.<br>The access decision reasons are a list of the grounds on which access was withheld. These have been normalised to some extent to separate out references to multiple clauses of the Archives Act.
DOI: 10.6084/m9.figshare.2060046
title: Tweets with Emoticons in Weibo: Ambivalent Expression

description: Weibo tweets with emoticons used in PloS ONE paper 'Emoticon-based Ambivalent Expression: A Hidden Indicator for Unusual Behaviors in Weibo'. More details can be found in the README file.
DOI: 10.6084/m9.figshare.2060427.v2
title: Auxiliary File 1 for "Reanalysis of Flood of Record Using HEC-2, FEC-RAS, and USGS Gage Data"

description: This file is a scan of a US Army Corps of Engineers HEC-2 input file for the Conestoga River, Lancaster County, Pennsylvania. The scan was obtained from the FEMA Engineering Library, Alexandria, VA.<br>
DOI: 10.6084/m9.figshare.2060010
title: supplementary Data

description: Suppleme.ntary data with PLOS ONE manuscript
DOI: 10.6084/m9.figshare.2060022
title: Methods matter: Considering locomotory mode and respirometry technique when estimating metabolic rates of fishes

description: Data for: Rummer JL, Binning SA, Roche DG, Johansen JL (2016) Methods matter: considering locomotory mode and respirometry technique when estimating metabolic rates of fishes. Conserv Physiol 4: doi:10.1093/conphys/cow008.<br>Data collected by JLR and JLJ. Please refer to the manuscript for data collection methods and statistical analyses. Metadata for the .csv data files are included in the ReadMe.txt file. For questions or to notify the authors if any errors are identified in the data, please contact the corresponding author (jodie.rummer@jcu.edu.au).<br>We estimated maximum metabolic rates (MMR) in four steady-swimming coral reef fishes – two body-caudal and two median-paired fin swimmers – using three different techniques. Differences between MMR estimates were not due to locomotory mode, but rather the method used to initiate maximum performance, with swimming respirometry resulting in the highest estimates.<br>Abstract:<br>Respirometry is frequently used to estimate metabolic rates and examine organismal responses to environmental change. Although a range of methodologies exists, it remains unclear whether differences in chamber design and exercise (type and duration) produce comparable results within individuals and whether the most appropriate method differs across taxa. We used a repeated-measures design to compare estimates of maximal and standard metabolic rates (MMR and SMR) in four coral reef fish species using the following three methods: (i) prolonged swimming in a traditional swimming respirometer; (ii) shortduration exhaustive chase with air exposure followed by resting respirometry; and (iii) short-duration exhaustive swimming in a circular chamber. We chose species that are steady/prolonged swimmers, using either a body–caudal fin or a median– paired fin swimming mode during routine swimming. Individual MMR estimates differed significantly depending on the method used. Swimming respirometry consistently provided the best (i.e. highest) estimate of MMR in all four species irrespective of swimming mode. Both short-duration protocols (exhaustive chase and swimming in a circular chamber) produced similar MMR estimates, which were up to 38% lower than those obtained during prolonged swimming. Furthermore, underestimates were not consistent across swimming modes or species, indicating that a general correction factor cannot be used. However, SMR estimates (upon recovery from both of the exhausting swimming methods) were consistent across both shortduration methods. Given the increasing use of metabolic data to assess organismal responses to environmental stressors, we recommend carefully considering respirometry protocols before experimentation. Specifically, results should not readily be compared across methods; discrepancies could result in misinterpretation of MMR and aerobic scope.
DOI: 10.6084/m9.figshare.2060046.v1
title: Dataset of Weibo tweets for PLOS ONE 2016 Paper

description: Weibo tweets with emoticons used in PloS ONE paper 'Emoticon-based Ambivalent Expression: A Hidden Indicator for Unusual Behaviors in Weibo'. More details can be found in the README file.
DOI: 10.6084/m9.figshare.2060010.v1
title: supplementary Data

description: Suppleme.ntary data with PLOS ONE manuscript
DOI: 10.6084/m9.figshare.2060022.v1
title: Methods matter: Considering locomotory mode and respirometry technique when estimating metabolic rates of fishes

description: Data for: Rummer JL, Binning SA, Roche DG, Johansen JL (2016) Methods matter: considering locomotory mode and respirometry technique when estimating metabolic rates of fishes. Conserv Physiol 4: doi:10.1093/conphys/cow008.<br>Data collected by JLR and JLJ. Please refer to the manuscript for data collection methods and statistical analyses. Metadata for the .csv data files are included in the ReadMe.txt file. For questions or to notify the authors if any errors are identified in the data, please contact the corresponding author (jodie.rummer@jcu.edu.au).<br>We estimated maximum metabolic rates (MMR) in four steady-swimming coral reef fishes – two body-caudal and two median-paired fin swimmers – using three different techniques. Differences between MMR estimates were not due to locomotory mode, but rather the method used to initiate maximum performance, with swimming respirometry resulting in the highest estimates.<br>Abstract:<br>Respirometry is frequently used to estimate metabolic rates and examine organismal responses to environmental change. Although a range of methodologies exists, it remains unclear whether differences in chamber design and exercise (type and duration) produce comparable results within individuals and whether the most appropriate method differs across taxa. We used a repeated-measures design to compare estimates of maximal and standard metabolic rates (MMR and SMR) in four coral reef fish species using the following three methods: (i) prolonged swimming in a traditional swimming respirometer; (ii) shortduration exhaustive chase with air exposure followed by resting respirometry; and (iii) short-duration exhaustive swimming in a circular chamber. We chose species that are steady/prolonged swimmers, using either a body–caudal fin or a median– paired fin swimming mode during routine swimming. Individual MMR estimates differed significantly depending on the method used. Swimming respirometry consistently provided the best (i.e. highest) estimate of MMR in all four species irrespective of swimming mode. Both short-duration protocols (exhaustive chase and swimming in a circular chamber) produced similar MMR estimates, which were up to 38% lower than those obtained during prolonged swimming. Furthermore, underestimates were not consistent across swimming modes or species, indicating that a general correction factor cannot be used. However, SMR estimates (upon recovery from both of the exhausting swimming methods) were consistent across both shortduration methods. Given the increasing use of metabolic data to assess organismal responses to environmental stressors, we recommend carefully considering respirometry protocols before experimentation. Specifically, results should not readily be compared across methods; discrepancies could result in misinterpretation of MMR and aerobic scope.
DOI: 10.6084/m9.figshare.2060007
title: Obesity Network

description: obesity network
DOI: 10.6084/m9.figshare.2059998
title: Content filtering in UK public libraries

description: Most local authorities / bodies running library services in the UK block websites using third-party content filtering software. This software offers various categories of filtering (eg. "pornography", "gambling", "weapons" etc.) and a local authority/body selects which of these categories it would like to block. In some instances, they will also block specific URLs.<br>A group of volunteers sent identical requests to public authorities under the Freedom of Information Act (2000) and the Freedom of Information Act (Scotland). Seven questions were asked to ascertain the extent of public authorities' filtering decisions, and these responses were tracked and made public via the website http://www.whatdotheyknow.com.This dataset represents a collation of these responses with individual links to the WDTK response, and attempts to map the extent of category-based web filtering on library public library PCs in the UK. Key information such as list of categories blocked and name of filtering software have been included in the database, although the original response hosted on WDTK should be referred to in all circumstances to ensure accuracy.
DOI: 10.6084/m9.figshare.2059998.v1
title: Content filtering in UK public libraries

description: Most local authorities / bodies running library services in the UK block websites using third-party content filtering software. This software offers various categories of filtering (eg. "pornography", "gambling", "weapons" etc.) and a local authority/body selects which of these categories it would like to block. In some instances, they will also block specific URLs.<br>A group of volunteers sent identical requests to public authorities under the Freedom of Information Act (2000) and the Freedom of Information Act (Scotland). Seven questions were asked to ascertain the extent of public authorities' filtering decisions, and these responses were tracked and made public via the website http://www.whatdotheyknow.com.This dataset represents a collation of these responses with individual links to the WDTK response, and attempts to map the extent of category-based web filtering on library public library PCs in the UK. Key information such as list of categories blocked and name of filtering software have been included in the database, although the original response hosted on WDTK should be referred to in all circumstances to ensure accuracy.
DOI: 10.6084/m9.figshare.2059983.v4
title: Fig 7. Result of Buoyancy and CoB/CoM Distance of Test Subject 11

description: Comparison of Buoyancy and CoB/CoM Distance Based on Different Swimming Abilities (test subjece 11)
DOI: 10.6084/m9.figshare.2059965
title: QuaMMM image analysis software and image datasets

description: Supplementary Data for publicationYadav Kuleesha, Wee Choo Puah, Martin Wasser (2016). "A model of muscle atrophy based on live microscopy of muscle remodelling in Drosophila metamorphosis", Yadav Kuleesha, Wee Choo Puah and Martin Wasser, Royal Society Open Science. <br>
DOI: 10.6084/m9.figshare.2059944
title: Supplementary Data for CAFA2

description: Supplementary data from the second Critical Assessment of protein Function Annotation (CAFA2). See preprint here: http://arxiv.org/abs/1601.00891<br>
DOI: 10.6084/m9.figshare.2059947
title: Parameterized VAWT Wake Model

description: This folder contains all of the wake data, CFD models, and completed simulations used in the paper: Parameterized Vertical-Axis Wind Turbine Wake Model Using CFD Vorticity Data (included in this folder). Descriptions of each of the items are as follows:<br>CFD VELOCITY/VORTICITY DATAThe .csv files of all of the vorticity and velocity data obtained from the lateral cuts made. Included is a .txt file describing the naming system and a .csv file containing the lengths used for obtaining the lateral cuts (i.e., length reported (m) divided by (30*i) indicates the distances downstream each cut (i) was made at).<br>Files are ordered by:<br>w#_s#_t#.csv<br>w#: indicates windspeed in m/s<br>s#: indicates solidity<br>t#: indicates tip-speed ratio multiplied by 100, for example: 250 = 2.5<br>The files that begin with "ConstDia_" follow the same naming convention for solidity and tip-speed ratio, but are all run at a wind speed of 15 m/s and the data is divided into 30 segments at consecutive diameter distances (1D, 2D, 3D, ... 30D).<br>CFD MODELSThis file contains the SolidWorks part files and the parasolid (*.x_t) files used for the CFD simulations. Base files of the CFD simulations are also included along with 2D meshed versions ready to run for each solidity (s1: 0.15, s2: 0.25, s3: 0.5, s4: 0.75, s5:, 1.0). The java macro files can be used in STAR-CCM+ to mesh and run the files by specifying each of the parameters desired near the beginning (meshsim.java and runsim.java).<br>Also included is the same CFD data used to model the PIV validation study using the specifications in the paper from: <br>Tescione, G., Ragni, D., He, C., Ferreira, C. S., and van Bussel, G., “Near wake flow analysis of a vertical axis wind turbine by stereoscopic particle image velocimetry,” Renewable Energy, Vol. 70, 2014, pp. 47-61.<br>These files include the base file (VAWT0018piv_base.sim), a 2D meshed file (VAWT0018piv_meshed2D.sim), a completed time-averaged file (VAWT0018piv_ta.sim), and the java files to mesh and run the simulation similar to as above (meshpiv.java and runpiv.java).<br>COMPLETED CFD SIMULATIONSThe completed 2D CFD simulations of a 3-bladed VAWT used for the initial parameterized wake model. The simulations were run at wind speeds of 12, 14, 15, and 16 m/s, and varying tip-speed ratios and solidities using STAR-CCM+. Each of the files are in a separate zip file (w##cfd.zip) with the wind speed and rotation speeds indicated. The naming conventions are similar to the CFD vorticity data with the differences of "ta" standing for time averaged.<br>To reference this data, use the reference of the paper in the folder (https://journals.sagepub.com/doi/10.1177/0309524X19849864).<br>
DOI: 10.6084/m9.figshare.2059935
title: Precomputational Paper Results

description: The dataset and results for a study on free-form precomputational results for wind turbine blades.
DOI: 10.6084/m9.figshare.2059935.v1
title: Precomputational Paper Results

description: The dataset and results for a study on free-form precomputational results for wind turbine blades.
DOI: 10.6084/m9.figshare.2059941
title: strauss_etal_PLOSone_data_public.zip

description: data sets used for statistical analyses in: Opposing patterns of seasonal change in functional and phylogenetic diversity of tadpole assemblages
DOI: 10.6084/m9.figshare.2059896
title: The genome of the miiuy croaker reveals well-developed innate immune and sensory systems

description: The data set of transcripts and proteins and GTF file
DOI: 10.6084/m9.figshare.2059947.v1
title: Parameterized Wake Model

description: This folder contains all of the wake data, CFD models, and completed simulations used in the paper: Parameterized Vertical-Axis Wind Turbine Wake Model Using CFD Vorticity Data (included in this folder). Descriptions of each of the items are as follows:<br>CFD VORTICITY DATAThe .csv files of all of the vorticity data obtained from the lateral cuts made. Included is a .txt file describing the naming system and a .csv file containing the lengths used for obtaining the lateral cuts (i.e., length reported (m) divided by (30*i) indicates the distances downstream each cut (i) was made at).<br>Files are ordered by:<br>w#_s#_t#.csv<br>w#: indicates windspeed in m/s<br>s#: indicates solidity<br>t#: indicates tip-speed ratio multiplied by 100, for example: 250 = 2.5<br>CFD MODELSThis file contains the SolidWorks part files and the parasolid (*.x_t) files used for the CFD simulations. Base files of the CFD simulations are also included (2D meshed) for each solidity (s1: 0.15, s2: 0.25, s3: 0.5, s4: 0.75, s5:, 1.0). The java macro file can be used in STAR-CCM+ to run the files by specifying each of the parameters desired near the beginning.<br>Also included is the same CFD data used to model the PIV validation study using the specifications in the paper: <br>Tescione, G., Ragni, D., He, C., Ferreira, C. S., and van Bussel, G., “Near wake flow analysis of a vertical axis wind turbine by stereoscopic particle image velocimetry,” Renewable Energy, Vol. 70, 2014, pp. 47-61.<br>COMPLETED CFD SIMULATIONSThe completed 2D CFD simulations of a 3-bladed VAWT used for the initial parameterized wake model. The simulations were run at wind speeds of 12, 14,15, and 16 m/s, rotation rates of 17 and 18 rad/sec, and varying tip-speed ratios and solidities using STAR-CCM+. The naming conventions are similar to the CFD vorticity data with the differences of "ta" standing for time averaged and r indicating a specified rotation rate rather than a wind speed.<br>
DOI: 10.6084/m9.figshare.2059827
title: the clinical and pathologic character of patients withhepatitis

description: the clinical character of patients
DOI: 10.6084/m9.figshare.2059947.v2
title: Parameterized Wake Model

description: This folder contains all of the wake data, CFD models, and completed simulations used in the paper: Parameterized Vertical-Axis Wind Turbine Wake Model Using CFD Vorticity Data (included in this folder). Descriptions of each of the items are as follows:<br>CFD VORTICITY DATAThe .csv files of all of the vorticity data obtained from the lateral cuts made. Included is a .txt file describing the naming system and a .csv file containing the lengths used for obtaining the lateral cuts (i.e., length reported (m) divided by (30*i) indicates the distances downstream each cut (i) was made at).<br>Files are ordered by:<br>w#_s#_t#.csv<br>w#: indicates windspeed in m/s<br>s#: indicates solidity<br>t#: indicates tip-speed ratio multiplied by 100, for example: 250 = 2.5<br>CFD MODELSThis file contains the SolidWorks part files and the parasolid (*.x_t) files used for the CFD simulations. Base files of the CFD simulations are also included (2D meshed) for each solidity (s1: 0.15, s2: 0.25, s3: 0.5, s4: 0.75, s5:, 1.0). The java macro file can be used in STAR-CCM+ to run the files by specifying each of the parameters desired near the beginning.<br>Also included is the same CFD data used to model the PIV validation study using the specifications in the paper: <br>Tescione, G., Ragni, D., He, C., Ferreira, C. S., and van Bussel, G., “Near wake flow analysis of a vertical axis wind turbine by stereoscopic particle image velocimetry,” Renewable Energy, Vol. 70, 2014, pp. 47-61.<br>COMPLETED CFD SIMULATIONSThe completed 2D CFD simulations of a 3-bladed VAWT used for the initial parameterized wake model. The simulations were run at wind speeds of 12, 14,15, and 16 m/s, rotation rates of 17 and 18 rad/sec, and varying tip-speed ratios and solidities using STAR-CCM+. The naming conventions are similar to the CFD vorticity data with the differences of "ta" standing for time averaged and r indicating a specified rotation rate rather than a wind speed.<br>
DOI: 10.6084/m9.figshare.2059836.v1
title: File-S1-HEC2scan.pdf

description: File S1 is a scan of a HEC-2 input file for the Conestoga River, obtained from the FEMA Engineering Library. File S2 is an ASCII text file with a .dat suffix for import into the US Army Corps of Engineers HEC-RAS program. File S3 is a zip file of File S2 after import into HEC-RAS.<br>
DOI: 10.6084/m9.figshare.2059896.v1
title: The draft genome of the miiuy croaker reveals well-developed innate immune and sensory systems

description: The data set of transcripts and proteins and GTF file