cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5061/dryad.885hk/1
title: Resight history of Steller sea lions in the Russian Far East

description: Data file contains annual resight history of Steller sea lions branded as pups between 1989 and 2008 and resighted between 1996 and 2011 at 6 major rookeries in the Russian Far East. Detailed information on data structure provided in read me file.
DOI: 10.5061/dryad.b2v37/1
title: Becker,Reichert-et-al_data_telomeres

description: Data provided in "Becker,Reichert-et-al_data_telomeres.txt" allow for running the animal models as described in the paper "Mother-offspring and nest mate resemblance but no heritability in early-life telomere length in white-throated dippers". Descriptions of the table columns are given in the file.
DOI: 10.5061/dryad.b2v37/2
title: Becker,Reichert-et-al_data_pedigree

description: "Becker,Reichert-et-al_data_pedigree.txt" contains pedigree data of white-throated dippers (Cinclus cinclus) which have been collected in an individual-based long-term study and allow for running the animal models as described in the paper "Mother-offspring and nest mate resemblance but no heritability in early-life telomere length in white-throated dippers".
DOI: 10.5061/dryad.f2g0f/7
title: FilterPostProb
DOI: 10.5061/dryad.f2g0f/8
title: Chronogram_R8S_PR95_smoothing5
DOI: 10.5061/dryad.h68bj/1
title: Conservation planning and ecosystem modelling data

description: Marxan and Marxan with Zones conservation planning software files and Ecospace model output files (Marxan software and associated manuals freely available from: http://www.uq.edu.au/marxan/). Ecopath, Ecosim and Ecospace models and supporting technical documentation on parameterisation available on request from Cefas and Ifremer (Ecopath, Ecosim and Ecospace input data, composition of functional groups and model parameters included with online supporting information associated with publication).
DOI: 10.5061/dryad.ht0hs/1
title: Data from: How does ascertainment bias in SNP analyses affect inferences about population history?

description: IPython notebooks containing the simulation and analyses code for the manuscript (named simulations.ipynb and analyses.ipynb respectively) and empirical and simulated data used in the manuscript.
DOI: 10.5061/dryad.k231g/1
title: Kernaleguen_et_al_JAE_data

description: Carbon and nitrogen isotopic values of whiskers of Antarctic and subantarctic fur seal females during the pup-rearing and inter-breeding periods.
DOI: 10.5061/dryad.m90n6/1
title: Appendix-dryad

description: Details of the sampled Fossil localities and the Palaeobiogeographical analysis
DOI: 10.5061/dryad.n20ms/2
title: Ambient "core community" OTU table

description: subsampled OTU table representing the "core community" of plots exposed to ambient N deposition.
DOI: 10.5061/dryad.n20ms/3
title: N Deposition "core community" OTU table

description: subsampled OTU table containing the OTUs representing the "core community" of experimental plots exposed to experimental N deposition
DOI: 10.5061/dryad.n20ms/4
title: mothur pipeline

description: this is the mothur pipeline used to generate the full OTU table.
DOI: 10.5061/dryad.q0d23/1
title: Time-shift data

description: Results of cross-inoculation between bacteria from either July or September and phages from June, July, August, or September and across eight horse chestnut trees (either sympatric combinations or allopatric combinations).
DOI: 10.5061/dryad.q3p64/1
title: data-and-code
DOI: 10.5061/dryad.r87k3/8
title: Microhexura_Assemblies

description: Trinity assemblies from two Microhexura population transcriptomes
DOI: 10.5061/dryad.r8dv2/1
title: AttentionEyespots

description: This file contains data that was used in the "Probability Look," "Latency to Fixate," and "Time Looking" analyses. The "VariableDescription" tab describes the variables in the "Data" tab.
DOI: 10.5061/dryad.r8dv2/2
title: PupilEyespots

description: This file contains data that was used in the "Pupil Size" analysis. The “VariableDescription" tab describes the variables in the "Data" tab.
DOI: 10.5061/dryad.068b6/1
title: Holbrookia maculata processing data

description: This file contains data for all Holbrookia maculata used in the study, including individual capture date/location, morphology data, trials each individual was included in, and whether the individual survived the trials.
DOI: 10.5061/dryad.068b6/2
title: Enclosure recapture data

description: This file contains recapture data for individual enclosure replicates. For each enclosure replicate, data are included on when the trial was run, which enclosure the trial was run in, and the number of substrate-matched and substrate-mismatched lizards that were recaptured.
DOI: 10.5061/dryad.068b6/3
title: Thermal preference data

description: This file contains data from thermal preference trials. Thermal preference trials were 90 minutes long, and we recorded data at 30 minute intervals throughout trials. For each lizard in the thermal preference trials, data are included on the lizard body temperature and distance of the lizard from the light source at each data collection point.
DOI: 10.5061/dryad.15jg1/1
title: ie_fsc_indonesia_share

description: This file contains the raw village-level data for the analysis. Please refer to the associated .log file (can be opened with any text editor) for variable descriptions.
DOI: 10.5061/dryad.1pj04/65
title: aflM_aflN locus - A. parasiticus x. A. flavus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/66
title: aflW_aflX locus - A. parasiticus x. A. flavus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/67
title: trpC locus - A. parasiticus x. A. flavus

description: Bankit submission to GenBank
DOI: 10.5061/dryad.1pj04/68
title: Figure S1 - Flow Cytometry

description: Raw data for Figure S1
DOI: 10.5061/dryad.1pj04/69
title: Table 1

description: Raw data for Table 1 including: number of sclerotia/stromata per slant, number of sclerotia/stromata examined, percent with ascocarps, and percent with ascospore-bearing ascocarps.
DOI: 10.5061/dryad.1pj04/70
title: Table 2 - Colony Diameter
DOI: 10.5061/dryad.1pj04/71
title: Table 2 - Conidial Diameter
DOI: 10.5061/dryad.1pj04/72
title: Table 2 - Sclerotial Weight
DOI: 10.5061/dryad.1pj04/73
title: Table 2 - Stipe Length
DOI: 10.5061/dryad.1pj04/74
title: Table 3 - CMLST_alignment_278x33

description: DNA sequence alignment for cluster multilocus sequence typing of 278x33 cross
DOI: 10.5061/dryad.22qc2/1
title: Polymorphism data

description: Microsatellite and nucleotide sequence data sets, used in the polymorphism study and the ABC analysis. ReadMe files describing the data are included in the directories.
DOI: 10.5061/dryad.22qc2/2
title: Scripts and reference tables of the ABC analysis

description: Contains the scripts needed to perform the simulations with ABCtoolbox and fastsimcoal for the ABC analysis, and the reference tables for each simulated model. ReadMe files are included in the directories.
DOI: 10.5061/dryad.2c1s7/10
title: SORTIE parameter file

description: Contains data on 16 parameters for each of the eight taxa considered here. These allow the instantiation of the equations 1-8 listed in the associated paper. In conjunction with parameters on mortality and dispersal they also allow SORTIE to be run to produce projections of United Kingdom lowland woodlands.
DOI: 10.5061/dryad.2c1s7/9
title: All trees growth

description: Contains data on DBH growth rates (cm yr-1) for the periods between measurements and the mean growth rate for 439 individuals of the eight taxa under consideration. Data collected in the field.
DOI: 10.5061/dryad.33mb8/1
title: Blue Crab 2008 2009 Data

description: Movement data for blue crabs tagged with acoustic transmitters
DOI: 10.5061/dryad.3948r/1
title: SQL database with intermediate results

description: This database is to be used with the accompanying R script.
DOI: 10.5061/dryad.3948r/2
title: R script with analysis pipeline

description: This script uses data from the accompanying SQL database.
DOI: 10.5061/dryad.49r20/1
title: The output data of ABC MCMC for each treatment

description: A zipped folder containing two subfolders, with all the minimally processed output from the paper. See the readme for more details, or visit the git repository for the actual code. https://bitbucket.org/brfoley76/flyabc/
DOI: 10.5061/dryad.6m150/1
title: Optical density (750nm) measurements from fitness assay

description: Measurements taken during fitness assay of ancestral and evolved lines in the selection environment (5gL-1 NaCl). Growth was monitored by measuring optical density at 750nm about every 9 hours.
DOI: 10.5061/dryad.6m150/2
title: Growth parameters of ancestral and evolved lines

description: Growth parameters (e.g. growth rate, carrying capacity) extracted from growth curve fitting for each ancestral and evolved line when cultured in the selection environment (5gL-1 NaCl)
DOI: 10.5061/dryad.72h45/2
title: Hydrological metrics

description: This file contains the set of 24 statistical metrics of hydrology for each site, as described in the manuscript. Please refer to the manuscript for definitions of each metric. As of April 2015 Full daily discharge data for these sites is available from the NSW Office of Water Continuous Water Monitoring network website (http://realtimedata.water.nsw.gov.au/water.stm) for NSW sites, and the Victoria State Government’s Water Measurement Information System website (http://data.water.vic.gov.au/monitoring.htm) for Victorian sites.
DOI: 10.5061/dryad.79d43/1
title: Data from: The extent and consequences of p-hacking in science

description: This zip file consists of three parts. 1. Data obtained from text-mining and associated analysis files. 2. Data obtained from previously published meta-analyses and associated analysis files. 3. Analysis files used to conduct meta-analyses of the data. Read me files are contained within this zip file.
DOI: 10.5061/dryad.7bj60/6
title: raw AFLP/MSAP data for the F252 DSE

description: Raw AFLP/MSAP data recorded on each progenitor of the F252 DSE between generations G0 and G6.
DOI: 10.5061/dryad.7bj60/7
title: raw AFLP/MSAP data for the MBS DSE

description: Raw AFLP/MSAP data recorded on each progenitor of the MBS DSE between generations G0 and G6.
DOI: 10.5061/dryad.84393/1
title: Accelerometers, animal-borne cameras, and body temperature recorders attached to ocean sunfish in 2012 and 2013

description: Behavioural data produced by Little Leonardo accelerometers, visual data produced by Little Leonardo digital still camera or video camera, and body temperature data produced by Lotek depth temperature recorders. Each folder are named as fish IDs in a tagging information excel file. The excel file also include calibration parameters for the accelerometers. Each folder contains text files output from Little Leonardo software, a folder which contains a cvs file and images from camera, and a cvs file output from Lotek software.
DOI: 10.5061/dryad.g75nq/1
title: Linkage map data for Acropora millepora

description: 2bRAD-based linkage map data
DOI: 10.5061/dryad.gb538/2
title: consensus_pynast_aligned_with_X.rooted

description: Rooted tree for UniFrac analysis
DOI: 10.5061/dryad.gb538/3
title: rareify_500_mean_complete_submit

description: Rarefied bacterial communities from two tick species and rodent host blood with metadata. Communities were rarefied to 500 sequences. The data is the average of 1000 rarefactions to 500 sequences.
DOI: 10.5061/dryad.gb538/4
title: rareify_50_mean_no3_complete_submit

description: Rarefied bacterial communities from two tick species and rodent host blood, with the top 3 most abundant OTUs removed. Sequences from these OTUs was removed and samples were rarefied to 50 sequences. The data is the average of 1000 rarefactions.
DOI: 10.5061/dryad.gb538/5
title: Barcodes

description: Barcodes needed to de-multiplex sequence data
DOI: 10.5061/dryad.gb538/6
title: GenBank Accession numbers for OTUs

description: Accession numbers for the GenBank submissions associated with the OTUs used in the final analysis. The following OTUs are not included in the SRA submission only, due to the quality of their representative sequence not meeting the standards for GenBank: 21, 28, 45, 56, 60, 67, 74, 88, 93, 99, 103, 108, 110, 111.
DOI: 10.5061/dryad.j2c13/1
title: Community Composition Data

description: Excel spreadsheet containing data on community composition of intertidal invertebrate communities along the Northern Gulf of Mexico coast at 7 sites. Each column provides data from a single sample. For each sample, the date the sample was collected, the date the sample was sorted and the abundance of within 24 taxa are recorded. Specific information on the location of samples is given in the sampling data.
DOI: 10.5061/dryad.j2c13/2
title: Sampling Data

description: Sampling data for cores taken to assess intertidal invertebrate composition at seven sites along the Northern Gulf of Mexico coast. For each group of samples the date of collection, location, time, size and material of the corer used, lattitude, longitude and general weather conditions are recorded.
DOI: 10.5061/dryad.j2c13/3
title: Sediment Data

description: CSV file containing data on sediment granulometrics determined by a laser diffraction particle size analyzer for sediment from 7 sites along the Northern Gulf of Mexico. Each row is a sample and the columns give different summary statistics grain size distributions.
DOI: 10.5061/dryad.jh72f/1
title: Census data for resub 2

description: Ceratitis spp. counts for various points within the field.
DOI: 10.5061/dryad.jh72f/2
title: Census (resub)

description: Data analysis script for the Ceratitis census data.
DOI: 10.5061/dryad.jh72f/3
title: flowermalformation

description: Proportion of inflorescences malformed by fungal pathogen as a function of distance from the natural vegetation.
DOI: 10.5061/dryad.jh72f/4
title: flowermalformation

description: R script for analysis of flower malformation rates.
DOI: 10.5061/dryad.jh72f/5
title: midges

description: Results of gall dissections for mango leaves collected at various distances from the natural vegetation. Looking for gall flies and their parasitoid.
DOI: 10.5061/dryad.jh72f/6
title: galls and parasitoids

description: R script for analysis of relationship between gall density and parasitism rate as a function of distance from the natural vegetation.
DOI: 10.5061/dryad.jh72f/7
title: Mango610

description: Results of rearing fruit flies from mangos collected in the field.
DOI: 10.5061/dryad.jh72f/8
title: Rearing Dom

description: Analysis looking at pre-eclosure mortality of fruit fly pupae from reared mangos.
DOI: 10.5061/dryad.jh72f/9
title: pupae71edge

description: Recordings of fruit fly pupal mortality at various distances into the natural and agricultural environments.
DOI: 10.5061/dryad.s8kv6/1
title: SmithMarcot_BeetleOccurrence

description: Database of fossil beetle occurrences reported in the international paleontological and entomological literature.  Fossils are from localities that range in age from the Permian through the Pliocene.
DOI: 10.5061/dryad.s8kv6/2
title: SmithMarcot_BeetleCollections

description: Database of fossil beetle collections reported in the international paleontological and entomological literature.  Localities range in age from the Permian through the Pliocene.
DOI: 10.5061/dryad.vt87n/1
title: Synthesized data for analysis

description: All data used to analyze response variables. Some data were log-transformed before analysis.
DOI: 10.5061/dryad.vt87n/5
title: SnailAbundance&AvgMass_PLOSOne

description: Metadata for pond snail and rams horn snail abundance and average mass.
DOI: 10.5061/dryad.068b6/4
title: Spectrometer data 2011

description: This file contains spectrometer data for painted and unpainted Holbrookia maculata collected in 2011. For each individual lizard that we measured with the spectrometer, data are included on percent transmittance at each wavelength when the lizard was unpainted, as well as after the lizard was painted.
DOI: 10.5061/dryad.068b6/5
title: Spectrometer data 2012

description: This file contains spectrometer data for painted and unpainted Holbrookia maculata collected in 2012. For each individual lizard that we measured with the spectrometer, data are included on percent transmittance at each wavelength when the lizard was unpainted, as well as  after the lizard was painted.
DOI: 10.5061/dryad.14vt7/1
title: Data: number of seeds and seedlings

description: Number of seeds counted in the dissected sample, number of seedlings in the germinated sample, seed and animal characteristics.
DOI: 10.5061/dryad.14vt7/2
title: Data_preparation

description: Script for preparing the data, before running the model.
DOI: 10.5061/dryad.14vt7/3
title: Model

description: Script of the Bayesian model.
DOI: 10.5061/dryad.1pj04/75
title: Table 3 - CMLST_alignment_278x65

description: DNA sequence alignment for cluster multilocus sequence typing of 278x65 cross
DOI: 10.5061/dryad.1pj04/76
title: Table 3 - CMLST_alignment_278x324

description: DNA sequence alignment for cluster multilocus sequence typing of 278x324 cross
DOI: 10.5061/dryad.1pj04/77
title: Table 3 - CMLST_alignment_278x327

description: DNA sequence alignment for cluster multilocus sequence typing of 278x327 cross
DOI: 10.5061/dryad.1pj04/78
title: Table 3 - GMLST_alignment_278x33

description: DNA sequence alignment for genome multilocus sequence typing of 278x33 cross
DOI: 10.5061/dryad.1pj04/79
title: Table 3 - GMLST_alignment_278x65

description: DNA sequence alignment for genome multilocus sequence typing of 278x65 cross
DOI: 10.5061/dryad.1pj04/80
title: Table 3 - GMLST_alignment_278x324

description: DNA sequence alignment for genome multilocus sequence typing of 278x324 cross
DOI: 10.5061/dryad.1pj04/81
title: Table 3 - GMLST_alignment_278x327

description: DNA sequence alignment for genome multilocus sequence typing of 278x327 cross
DOI: 10.5061/dryad.1pj04/82
title: Table 3 - mycotoxins

description: HPLC data for mycotoxins
DOI: 10.5061/dryad.1pj04/83
title: Figure 6 - Global B aflatoxin isolates
DOI: 10.5061/dryad.2d728/1
title: Human pelvis 3D landmark data

description: This file contains fine-resolution 3D landmark data for 99 human pelvises (71 landmarks per pelvis, in columns) as well as information on stature and head circumference of these individuals (99 individuals, in rows). The data stem from a large dataset compiled by Herbert Reynolds and colleagues in 1982 in a study for the Federal Aviation Administration, Washington DC, USA. Original publication: Reynolds HM, Snow CC, Young JW (1982) Spatial Geometry of the Human Pelvis. National Technical Information Service, Washington DC. Memorandum Report prepared for the U.S. Department of Transportation, Federal Aviation Administration, Office of Aviation Medicine. Their original aim was to develop a geometric model of human pelvic morphology to improve crash test devices and vehicle safety. The measured skeletons are part of the Hamann-Todd collection at the Cleveland Museum of Natural History, USA. Before skeletonization of the human bodies, a complete series of anthropometric measurements were taken. Of these measurements this file contains head circumference and stature. The study sample of Reynolds and colleagues was selected to match the body weight and size distribution of the US population. Only adult specimens, 18-55 years old at time of death, were used. The pelvises were reassembled, and 3D landmark coordinates were recorded on each of the articulated pelvises using a Hewlett Packard digitizer. The first row of the data file contains variable names and landmark numbers. The first 5 columns contain information on specimen number (1-99), ID (individual Hamann-Todd collection ID), sex (1=male, 2=female), head circumference (in mm) and stature (in mm). Landmark coordinates start in column 6.The 71 3D points per individual each consist of a x-, y- and z-coordinate, i.e. 71x3 landmark coordinates. Axes scales are in mm. Missing data points are indicated as "X".
DOI: 10.5061/dryad.3t761/1
title: Supplementary Material

description: Online Appendices 1-5
DOI: 10.5061/dryad.4fj54/1
title: Final DNA sequence assembly

description: DNA alignment of all sequences used in the study.
DOI: 10.5061/dryad.4fj54/2
title: whales_finalAnalysis_mcc

description: Tree file used to build Figure 1
DOI: 10.5061/dryad.4fj54/3
title: Summary of habitat envelope parameters

description: Data on all habitat envelope parameters used, including computer-generated and expert-modified, and text explaining rationale for modifications.
DOI: 10.5061/dryad.5sv61/1
title: Hau et al 2015 for dryad submission
DOI: 10.5061/dryad.6v4c0/1
title: Simulation result files, ztree result files and mathematica notebooks for analysis

description: Data and analysis files for paper "Partner choice creates fairness in humans", published in Proceedings B, 2015, by Stéphane Debove, Jean-Baptiste André and Nicolas Baumard. Please read the README.txt files found in the folders for a description of the content of the folders. If more details are needed on the data or the analysis, please contact the first author of the publication (find contact on personal website at http://stephanedebove.net ). Netlogo code is available both within this zip file and as a separate download.
DOI: 10.5061/dryad.6v4c0/2
title: Netlogo code for the agent-based simulations

description: The file fairness_code.nlogo is also available in the zip archive data_Debove_2015_partner_choice_creates_fairness.zip
DOI: 10.5061/dryad.7fh4q/1
title: Global rodents, traits, and zoonotic reservoir status

description: These data combine rodent species and life history traits from the PanTHERIA database (defined in associated metadata), in addition to a number of derived variables (defined in the published PNAS paper).
DOI: 10.5061/dryad.7mf4k/1
title: Supplementary Table 1

description: Information about samples used for Illumina sequecning and flow cytometry.
DOI: 10.5061/dryad.7mf4k/2
title: Supplementary Table 2

description: C-value estimates as determined by flow cytometry.
DOI: 10.5061/dryad.885sn/1
title: Gillanders et al BL growth measurements etc on fish otoliths

description: Information from sectioned fish otoliths collected in the Coorong estuary, South Australia between 2008 and 2012. Includes fish code (fishid), year of capture (year cap), salinity (salinity), age at capture (agecap), length (length; fish total length in mm), sex (sex; female, F vs male, M), partial migration status (partial; R, resident vs M, migratory), Fulton's K condition index (fulton) and anu1 … anu31 (growth increment measurements for each annulus commencing at the 1st full increment (i.e. excludes from core to 1st increment) and moving towards the edge of the otolith, but excluding the incomplete growth increment on the edge of the otolith). NA indicates missing data. Where NA occurs for growth increment data, these increments had unclear growth zones.
DOI: 10.5061/dryad.8n344/1
title: Data on algal resources, Daphnia traits, and epidemic size in 12 lakes

description: Data on algal resources (log-transformed particulate carbon, nitrogen, and phosphorus), Daphnia traits (size, reproduction, and parasite load), and epidemic size (integrated prevalence) calculated from weekly sampling of 12 lakes in Indiana, USA