cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11917005
title: Additional file 5 of Genome sequencing of gut symbiotic Bacillus velezensis LC1 forÂ bioethanol production from bamboo shoots

description: Additional file 5: Table S4. Annotation of dioxygenase, monooxygenase, peroxidase, laccase and oxidoreductase genes identified in the genome of B. velezensis LC1.
DOI: 10.6084/m9.figshare.12965598
title: Additional file 7 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 7 Table S7. List of primers used in this study.
DOI: 10.6084/m9.figshare.12965589
title: Additional file 4 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 4 Table S4. List of 69 differentially expressed proteins that were used for protein-protein interaction analysis.
DOI: 10.6084/m9.figshare.11916990
title: Additional file 3 of Genome sequencing of gut symbiotic Bacillus velezensis LC1 forÂ bioethanol production from bamboo shoots

description: Additional file 3: Table S2. GO annotations of carbohydrate metabolism in genome of B. velezensis LC1
DOI: 10.6084/m9.figshare.11916999
title: Additional file 4 of Genome sequencing of gut symbiotic Bacillus velezensis LC1 forÂ bioethanol production from bamboo shoots

description: Additional file 4: Table S3. KEGG Pathway classification of B. velezensis LC1.
DOI: 10.6084/m9.figshare.11917062.v1
title: Additional file 13 of Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice

description: Additional file 13 : Table S5. Details of the wild rice (Oryza rufipogon).
DOI: 10.6084/m9.figshare.11917257
title: Additional file 5 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 5. A summary of the WGCN.
DOI: 10.6084/m9.figshare.12441323
title: Additional file 4 of Initiator and executioner caspases in salivary gland apoptosis of Rhipicephalus haemaphysaloides

description: Additional file 4: Dataset S1. Differentially expressed genes in salivary glands of unfed and engorged ticks.
DOI: 10.6084/m9.figshare.12441323.v1
title: Additional file 4 of Initiator and executioner caspases in salivary gland apoptosis of Rhipicephalus haemaphysaloides

description: Additional file 4: Dataset S1. Differentially expressed genes in salivary glands of unfed and engorged ticks.
DOI: 10.6084/m9.figshare.11917014
title: Additional file 7 of Genome sequencing of gut symbiotic Bacillus velezensis LC1 forÂ bioethanol production from bamboo shoots

description: Additional file 7: Table S6. Primers used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.12965580.v1
title: Additional file 1 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 1 Table S1. List of 55,426 peptides identified in this study.
DOI: 10.6084/m9.figshare.11917014.v1
title: Additional file 7 of Genome sequencing of gut symbiotic Bacillus velezensis LC1 forÂ bioethanol production from bamboo shoots

description: Additional file 7: Table S6. Primers used for RT-qPCR analysis.
DOI: 10.6084/m9.figshare.12965592.v1
title: Additional file 5 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 5 Table S5. List of 45 differentially expressed proteins that were involved in the protein processing in endoplasmic reticulum pathway.
DOI: 10.6084/m9.figshare.12965613.v1
title: Additional file 11 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 11: Table S6. Primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.12965627
title: Additional file 4 of Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

description: Additional file 4: Table S3. Reference genome coordinates from the novel salt-responsive transcripts identified in the four genotypes.
DOI: 10.6084/m9.figshare.12965637
title: Additional file 6 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 6: Table S3. The prediction of caucasian clover rhizome transcription factor (TF) family.
DOI: 10.6084/m9.figshare.12441311.v1
title: Additional file 3 of Initiator and executioner caspases in salivary gland apoptosis of Rhipicephalus haemaphysaloides

description: Additional file 3: Alignment S1. Sequences of unigenes (FASTA format).
DOI: 10.6084/m9.figshare.12441353.v1
title: Additional file 1 of A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies

description: Additional file 1: Supplementary 1. Proteins related to NSCLC (n = 406).
DOI: 10.6084/m9.figshare.12965601
title: Additional file 8 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 8 Table S8. Raw data used for qRT-PCR analysis in this study.
DOI: 10.6084/m9.figshare.12965601.v1
title: Additional file 8 of Comparative analysis of maca (Lepidium meyenii) proteome profiles reveals insights into response mechanisms of herbal plants to high-temperature stress

description: Additional file 8 Table S8. Raw data used for qRT-PCR analysis in this study.
DOI: 10.6084/m9.figshare.12965640
title: Additional file 7 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 7: Table S4. The results of different physiological indicators. The bar chart of sugar, starch, lignin, ZT, GA3, IAA and ABA content.
DOI: 10.6084/m9.figshare.12965613
title: Additional file 11 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 11: Table S6. Primers used for qRT-PCR.
DOI: 10.6084/m9.figshare.12965619
title: Additional file 2 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 2: Table S1. The prediction of SSRs.
DOI: 10.6084/m9.figshare.12965646
title: Additional file 9 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 9: Table S5. The results of qRT-PCR.
DOI: 10.6084/m9.figshare.12965825
title: Additional file 2 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 2. sRNA-seq data.
DOI: 10.6084/m9.figshare.12965828
title: Additional file 3 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 3. Ago-IP seq data.
DOI: 10.6084/m9.figshare.12965634
title: Additional file 5 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 5: Table S2. Statistics of comparison results between the Illumina sequencing data and the non-redundant transcripts
DOI: 10.6084/m9.figshare.12965828.v1
title: Additional file 3 of Multi-omics profiling reveals microRNA-mediated insulin signaling networks

description: Additional file 3. Ago-IP seq data.
DOI: 10.6084/m9.figshare.12965621
title: Additional file 2 of Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

description: Additional file 2: Table S2. Genes with extended 3′-end and position in the reference genome of the clusters of additional reads scored.
DOI: 10.6084/m9.figshare.12965621.v1
title: Additional file 2 of Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

description: Additional file 2: Table S2. Genes with extended 3′-end and position in the reference genome of the clusters of additional reads scored.
DOI: 10.6084/m9.figshare.11917062
title: Additional file 13 of Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice

description: Additional file 13 : Table S5. Details of the wild rice (Oryza rufipogon).
DOI: 10.6084/m9.figshare.12441353
title: Additional file 1 of A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies

description: Additional file 1: Supplementary 1. Proteins related to NSCLC (n = 406).
DOI: 10.6084/m9.figshare.12965640.v1
title: Additional file 7 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 7: Table S4. The results of different physiological indicators. The bar chart of sugar, starch, lignin, ZT, GA3, IAA and ABA content.
DOI: 10.6084/m9.figshare.12965864
title: Additional file 18 of Estimate of the sequenced proportion of the global prokaryotic genome

description: Additional file 18: Supplementary dataset 2. Bcell, BOTU and POTU of different environment types.
DOI: 10.6084/m9.figshare.12441359
title: Additional file 2 of A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies

description: Additional file 2: Supplementary 2. List of GO enrichment results of potential targets of JOEI associated with NSCLC.
DOI: 10.6084/m9.figshare.11917086
title: Additional file 3 of Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice

description: Additional file 3 : Table S1. Details of the accessions investigated and two grain number gene haplotypes.
DOI: 10.6084/m9.figshare.11917086.v1
title: Additional file 3 of Natural Sequence Variations and Combinations of GNP1 and NAL1 Determine the Grain Number per Panicle in Rice

description: Additional file 3 : Table S1. Details of the accessions investigated and two grain number gene haplotypes.
DOI: 10.6084/m9.figshare.12965627.v1
title: Additional file 4 of Transcriptome profiling at osmotic and ionic phases of salt stress response in bread wheat uncovers trait-specific candidate genes

description: Additional file 4: Table S3. Reference genome coordinates from the novel salt-responsive transcripts identified in the four genotypes.
DOI: 10.6084/m9.figshare.11917152.v1
title: Additional file 3 of A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles

description: Additional file 3 Table S3. Subtype annotation of samples in 13 TCGA datasets by DeClust or TCGA.
DOI: 10.6084/m9.figshare.12441368.v1
title: Additional file 3 of A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies

description: Additional file 3: Supplementary 3. List of KEGG enrichment results of potential targets of JOEI associated with NSCLC.
DOI: 10.6084/m9.figshare.13489974
title: Comparative analysis of RNA-Seq data reveals adventitious root development is mediated by <i>ChIFNα</i> in <i>lotus japonicus</i>

description: The formation of adventitious roots (ARs) plays an important role in grass growth and production. Chicken alpha interferon (<i>ChIFNα</i>) is an animal glycoprotein with broad activities of immune control, gene induction, growth and development regulation. <i>ChIFNα</i> gene was transformed to <i>Lotus japonicus</i> and its expression was found to promote AR development. The primordia formation occurred 3–5 days earlier, and more root hairs appeared in the transgenic plants (TP) than in the wild-type parents (WT). Data of RNA sequences from TP and WT <i>in vitro</i> hydroponic culture were analyzed. Overall, the intersection of the differentially upregulated genes at 0–12 days included 278 genes in TP and 244 genes in WT plants. Gene Ontology analysis indicated that the differentially expressed genes (DEGs) in TPs were enriched in response to biotic stimulus, metabolic process, sucrose transport, carbon fixation and signal transduction. Further, Kyoto Encyclopedia of Genes and Genomes enrichment analysis found carbon metabolism, carbon fixation in photosynthetic organisms and photosynthesis enriched in TPs. Co-expression analysis of the DEGs showed that 35 and 18 transcription factors (TFs) were involved in ARs formation in TP and WT plants, respectively. However, the TFs C3H and C2C2-GATA showed the opposite regulatory pattern with <i>ChIFNα</i> expression. Together, these data suggest that <i>ChIFNα</i> promotes AR development by modulating specific pathways and TFs. These results provide new insight into the mechanism by which animal interferon modulates plant growth and lays the foundation for cultivating new forage germplasm using animal cytokines.
DOI: 10.6084/m9.figshare.11917158
title: Additional file 4 of A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles

description: Additional file 4 Table S4. Associations between somatic mutations or copy number alterations and subtypes by DeClust or TCGA.
DOI: 10.6084/m9.figshare.12965646.v1
title: Additional file 9 of Revealing the full-length transcriptome of caucasian clover rhizome development

description: Additional file 9: Table S5. The results of qRT-PCR.
DOI: 10.6084/m9.figshare.11917185
title: Additional file 3 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 3 : Table S3. Differentially expressed circRNAs in the three comparison groups. (Table S3A: Birth compared to E90d; Table S3B: Birth compared to E120d; Table S3C: E120d compared to E90d).
DOI: 10.6084/m9.figshare.11917194.v1
title: Additional file 3 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 3. List of unique ITS amplicons assigned to individual OTUs, their taxonomic classification to the species level and the number of times these were amplified from each sample (after rarefaction to 41,000 to reduce sample heterogeneity).
DOI: 10.6084/m9.figshare.12441368
title: Additional file 3 of A bioinformatics investigation into the pharmacological mechanisms of javanica oil emulsion injection in non-small cell lung cancer based on network pharmacology methodologies

description: Additional file 3: Supplementary 3. List of KEGG enrichment results of potential targets of JOEI associated with NSCLC.
DOI: 10.6084/m9.figshare.14532185
title: Additional file 11 of Maternal karyogene and cytoplasmic genotype affect the induction efficiency of doubled haploid inducer in Brassica napus

description: Additional file 11. Genotyping raw data.
DOI: 10.6084/m9.figshare.11917200
title: Additional file 4 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 4. Taxonomic classification of 16S OTUs at six levels (kingdom to genus) and their abundance in each sample (after rarefaction).
DOI: 10.6084/m9.figshare.11917179.v1
title: Additional file 1 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 1. List of the strains isolated from bagasse including a detailed description of isolation conditions and homology of rRNA sequences.
DOI: 10.6084/m9.figshare.12441491.v1
title: Additional file 1 of Comparison of three Agrobacterium-mediated co-transformation methods for generating marker-free transgenic Brassica napus plants

description: Additional file 1: Table S1. The sequences of six units included in the artificially synthetic fragment. Table S2. The unlinked co-insertion frequency and overall success frequency in the three systems.
DOI: 10.6084/m9.figshare.8252345.v1
title: Additional file 4: of Transcriptome analysis of responses to bluetongue virus infection in Aedes albopictus cells

description: KEGG Pathway annotations for differentially expressed genes. (XLS 25 kb)
DOI: 10.6084/m9.figshare.14532194.v1
title: Additional file 14 of Maternal karyogene and cytoplasmic genotype affect the induction efficiency of doubled haploid inducer in Brassica napus

description: Additional file 14. Statistics of identification results of different identification methods.
DOI: 10.6084/m9.figshare.11917188
title: Additional file 2 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 2. List of unique 16S amplicons assigned to individual OTUs, their taxonomic classification to the genus level and the number of times these were amplified from each sample (after rarefaction to 45,000 to reduce sample heterogeneity).
DOI: 10.6084/m9.figshare.11917263.v1
title: Additional file 6 of Transcriptome differences in adipose stromal cells derived from pre- and postmenopausal women

description: Additional file 6. The complete MEGCN.
DOI: 10.6084/m9.figshare.11917176
title: Additional file 2 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 2 : Table S2. Total circRNAs detected at the E90d, E120d, and Birth stages.
DOI: 10.6084/m9.figshare.11917179
title: Additional file 1 of A snapshot of microbial diversity and function in an undisturbed sugarcane bagasse pile

description: Additional file 1. List of the strains isolated from bagasse including a detailed description of isolation conditions and homology of rRNA sequences.
DOI: 10.6084/m9.figshare.11917203
title: Additional file 6 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 6 : Table S6A. A total of 55 source genes and their corresponding 255 circRNAs were enriched in the significantly differentially-expressed KEGG pathways. Table S6B. Seven source genes and their corresponding 35 circRNAs.
DOI: 10.6084/m9.figshare.11917203.v1
title: Additional file 6 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 6 : Table S6A. A total of 55 source genes and their corresponding 255 circRNAs were enriched in the significantly differentially-expressed KEGG pathways. Table S6B. Seven source genes and their corresponding 35 circRNAs.
DOI: 10.6084/m9.figshare.11917191
title: Additional file 4 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 4 : Table S4. Detailed results of GO analysis for circRNAs source genes. (Table S4A: Birth compared to E90d; Table S4B: Birth compared to E120d; Table S4C: E120d compared to E90d).
DOI: 10.6084/m9.figshare.11917209.v1
title: Additional file 7 of Identification and characterization of circRNAs in the skin during wool follicle development in Aohan fine wool sheep

description: Additional file 7 : Table S7. Primer sequences for qRT-PCR of the seven randomly selected circRNAs.
DOI: 10.6084/m9.figshare.12441491
title: Additional file 1 of Comparison of three Agrobacterium-mediated co-transformation methods for generating marker-free transgenic Brassica napus plants

description: Additional file 1: Table S1. The sequences of six units included in the artificially synthetic fragment. Table S2. The unlinked co-insertion frequency and overall success frequency in the three systems.
DOI: 10.6084/m9.figshare.11917158.v1
title: Additional file 4 of A reference profile-free deconvolution method to infer cancer cell-intrinsic subtypes and tumor-type-specific stromal profiles

description: Additional file 4 Table S4. Associations between somatic mutations or copy number alterations and subtypes by DeClust or TCGA.
DOI: 10.6084/m9.figshare.12441452
title: Additional file 1 of Th17 cells inhibit CD8+ T cell migration by systematically downregulating CXCR3 expression via IL-17A/STAT3 in advanced-stage colorectal cancer patients

description: Additional file 1: Table S1. Primers used in this study. Figure S1. The migratory ability of CD8+ T cells to CXCL10 depends on CXCR3 expression. Figure S2. The expression of CXCR3 ligands were unchanged after IL-17A stimulation. Figure S3. High expression levels of P-STAT3 in CD8+ T cells of advanced-stage CRC. Figure S4. IL-17A is predominantly secreted by CD4+ T cells from PB of CRC patients. Figure S5. The positive efficiency of enriched Th17 cells. Figure S6. CXCR3 is predominantly expressed in the stromal CD8+ T cells of tumor tissues, and IL-17A is mainly secreted by CD4+ T cells
DOI: 10.6084/m9.figshare.21878861
title: Additive manufacturing of flexible polymer-derived ceramic matrix composites

description: It remains challenging to broaden the application fields of ceramics, largely because the hardness and brittleness of ceramics mean that they cannot undergo shape reconfiguration. In this study, we developed an ultraviolet light-curable preceramic polymer slurry, and this slurry was used for digital light processing printing of flexible green parts in designed shapes. These parts were subsequently transformed into complex structures by an assisted secondary molding strategy that enabled the morphology of their green and pyrolyzed forms to be well controlled. The collapse of bulk pyrolyzed parts was avoided by impregnating their precursors with silicon nitride (Si<sub>3</sub>N<sub>4</sub>) particles. The effects of different proportions of Si<sub>3</sub>N<sub>4</sub> on the weight loss, shrinkage, density, porosity, and mechanical properties of the pyrolyzed composites were investigated, and the bending strength and Vickers hardness of the composites with 10 wt.% Si<sub>3</sub>N<sub>4</sub> were found to be 130.61 ± 16.01 MPa and 6.43 ± 0.12 GPa, respectively.
DOI: 10.6084/m9.figshare.12441452.v1
title: Additional file 1 of Th17 cells inhibit CD8+ T cell migration by systematically downregulating CXCR3 expression via IL-17A/STAT3 in advanced-stage colorectal cancer patients

description: Additional file 1: Table S1. Primers used in this study. Figure S1. The migratory ability of CD8+ T cells to CXCL10 depends on CXCR3 expression. Figure S2. The expression of CXCR3 ligands were unchanged after IL-17A stimulation. Figure S3. High expression levels of P-STAT3 in CD8+ T cells of advanced-stage CRC. Figure S4. IL-17A is predominantly secreted by CD4+ T cells from PB of CRC patients. Figure S5. The positive efficiency of enriched Th17 cells. Figure S6. CXCR3 is predominantly expressed in the stromal CD8+ T cells of tumor tissues, and IL-17A is mainly secreted by CD4+ T cells