cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.880644
title: TB - 3 combined datasets (TB MLSMR, CB2 and Kinase)

description: combined dataset from TB paper J Chem Inf Model. 2013 Nov 25;53(11):3054-63. doi: 10.1021/ci400480s. Epub 2013 Oct 30. Fusing Dual-Event Data Sets for Mycobacterium tuberculosis Machine Learning Models and Their Evaluation. Ekins S, Freundlich JS, Reynolds RC. Author information Abstract The search for new tuberculosis treatments continues as we need to find molecules that can act more quickly, be accommodated in multidrug regimens, and overcome ever increasing levels of drug resistance. Multiple large scale phenotypic high-throughput screens against Mycobacterium tuberculosis (Mtb) have generated dose response data, enabling the generation of machine learning models. These models also incorporated cytotoxicity data and were recently validated with a large external data set. A cheminformatics data-fusion approach followed by Bayesian machine learning, Support Vector Machine, or Recursive Partitioning model development (based on publicly available Mtb screening data) was used to compare individual data sets and subsequent combined models. A set of 1924 commercially available molecules with promising antitubercular activity (and lack of relative cytotoxicity to Vero cells) were used to evaluate the predictive nature of the models. We demonstrate that combining three data sets incorporating antitubercular and cytotoxicity data in Vero cells from our previous screens results in external validation receiver operator curve (ROC) of 0.83 (Bayesian or RP Forest). Models that do not have the highest 5-fold cross-validation ROC scores can outperform other models in a test set dependent manner. We demonstrate with predictions for a recently published set of Mtb leads from GlaxoSmithKline that no single machine learning model may be enough to identify compounds of interest. Data set fusion represents a further useful strategy for machine learning construction as illustrated with Mtb. Coverage of chemistry and Mtb target spaces may also be limiting factors for the whole-cell screening data generated to date.
DOI: 10.6084/m9.figshare.880649.v1
title: Modeling runtime

description: Traces used in chapter "Modeling runtime"
DOI: 10.6084/m9.figshare.880662.v2
title: OBERecords

description: Audio-recordings of participants A and Al when in OBE
DOI: 10.6084/m9.figshare.880643
title: Dataset for Evangelista et al (2014), Aerodynamic characteristics of a feathered dinosaur measured using physical models: effects of form on static stability and control effectiveness, accepted to PLoS

description: Dataset for Evangelista et al (2014) PLoS ONE 9(1):e85203 - the DOI for the main paper is 10.1371/journal.pone.0085203; a preprint has been deposited at bioRxiv at the URL listed below. The data are also hosted on Bitbucket; for the latest bleeding-edge repository copy: hg clone ssh://hg@bitbucket.org/devangel77b/microraptor-data
DOI: 10.6084/m9.figshare.880650.v1
title: RFunctions

description: Functions in R. Might include .Rmd and .txt files as well.
DOI: 10.6084/m9.figshare.880649.v3
title: Modeling runtime

description: Traces used in chapter "Modeling runtime"
DOI: 10.6084/m9.figshare.880649.v2
title: Modeling runtime

description: Traces used in chapter "Modeling runtime"
DOI: 10.6084/m9.figshare.880643.v1
title: Dataset for Evangelista et al (in press), Aerodynamic characteristics of a feathered dinosaur measured using physical models: effects of form on static stability and control effectiveness, accepted to PLoS

description: Dataset for Evangelista et al (2014) - the DOI for the main paper is 10.1371/journal.pone.0085203; a preprint has been deposited at bioRxiv at the URL listed below. The data are also hosted on Bitbucket; for the latest bleeding-edge repository copy: hg clone ssh://hg@bitbucket.org/devangel77b/microraptor-data
DOI: 10.6084/m9.figshare.880643.v3
title: Dataset for Evangelista et al (2014), Aerodynamic characteristics of a feathered dinosaur measured using physical models: effects of form on static stability and control effectiveness, accepted to PLoS

description: Dataset for Evangelista et al (2014) PLoS ONE 9(1):e85203 - the DOI for the main paper is 10.1371/journal.pone.0085203; a preprint has been deposited at bioRxiv at the URL listed below. The data are also hosted on Bitbucket; for the latest bleeding-edge repository copy: hg clone ssh://hg@bitbucket.org/devangel77b/microraptor-data
DOI: 10.6084/m9.figshare.880643.v2
title: Dataset for Evangelista et al (2014), Aerodynamic characteristics of a feathered dinosaur measured using physical models: effects of form on static stability and control effectiveness, accepted to PLoS

description: Dataset for Evangelista et al (2014) - the DOI for the main paper is 10.1371/journal.pone.0085203; a preprint has been deposited at bioRxiv at the URL listed below. The data are also hosted on Bitbucket; for the latest bleeding-edge repository copy: hg clone ssh://hg@bitbucket.org/devangel77b/microraptor-data
DOI: 10.6084/m9.figshare.880620
title: Phosphoinositide-specific phospholipase C inhibition data using the dipeptidyl peptidase-IV inhibitors K-579 and LAF-237

description: Data set for Fig 2 in the main article, describing the inhibition of Phosphoinositide-specific phospholipase C inhibition using the dipeptidyl peptidase-IV inhibitors K-579 and LAF-237.
DOI: 10.6084/m9.figshare.880620.v1
title: Phosphoinositide-specific phospholipase C inhibition data using the dipeptidyl peptidase-IV inhibitors K-579 and LAF-237

description: Data set for Fig 2 in the main article, describing the inhibition of Phosphoinositide-specific phospholipase C inhibition using the dipeptidyl peptidase-IV inhibitors K-579 and LAF-237.
DOI: 10.6084/m9.figshare.880610
title: rawfiles for 8_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880609
title: rawfiles for 7_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880611
title: rawfiles for 9_PKC53_putativemutant_mi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880609.v1
title: rawfiles for 7_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880610.v1
title: rawfiles for 8_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880611.v1
title: rawfiles for 9_PKC53_putativemutant_mi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880603
title: rawfiles for 3_FoxPdicerRNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880606
title: rawfiles for 6_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880604
title: rawfiles for 4_PKC53_RNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880604.v1
title: rawfiles for 4_PKC53_RNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880605
title: rawfiles for 5_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880602
title: rawfiles for 21_TrpA

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880603.v1
title: rawfiles for 3_FoxPdicerRNAi

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880605.v1
title: rawfiles for 5_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880606.v1
title: rawfiles for 6_HS_test

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880593
title: rawfiles for 19_TNT_c232_c105_fliesgenotypenotcertain

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880599
title: rawfiles for 2_PKC53emutant_outcrossed

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880600
title: rawfiles for 20_PKCRNAI

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880593.v1
title: rawfiles for 19_TNT_c232_c105_fliesgenotypenotcertain

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880599.v1
title: rawfiles for 2_PKC53emutant_outcrossed

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880600.v1
title: rawfiles for 20_PKCRNAI

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880602.v1
title: rawfiles for 21_TrpA

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880591
title: rawfiles for 17_PKCi_d42G4w_woUASGFP

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880580
title: otu_table_no_single_or_doubles.biom

description: biom file
DOI: 10.6084/m9.figshare.880580.v1
title: otu_table_no_single_or_doubles.biom

description: biom file
DOI: 10.6084/m9.figshare.880592
title: rawfiles for 18_PKCi_d42G4HAg80_c380_UASGFP

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880579
title: alpha_diversity

description: alpha_diversity values
DOI: 10.6084/m9.figshare.880591.v1
title: rawfiles for 17_PKCi_d42G4w_woUASGFP

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880592.v1
title: rawfiles for 18_PKCi_d42G4HAg80_c380_UASGFP

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.880579.v1
title: alpha_diversity

description: alpha_diversity values
DOI: 10.6084/m9.figshare.880575
title: Table_1

description: Samples analyzed in this study. First letter in sample refers to flock sampled, with F, Light/Heavy flocks; CF, commercial flock individual samples; and RF, research flock individual samples; “W”, refers to week of age.
DOI: 10.6084/m9.figshare.880577
title: filtered rep fasta set

description: Filtered representative sequences of OTUs.
DOI: 10.6084/m9.figshare.880578
title: Tree_file

description: Tree file for dataset
DOI: 10.6084/m9.figshare.880577.v1
title: filtered rep fasta set

description: Filtered representative sequences of OTUs.
DOI: 10.6084/m9.figshare.880578.v1
title: Tree_file

description: Tree file for dataset
DOI: 10.6084/m9.figshare.880571
title: Supp_Table_S2

description: Observed OTUs in the entire dataset.
DOI: 10.6084/m9.figshare.880572
title: Supp_Table_S4

description: The core microbiome assessed using the data from flocks CF and RF over all timepoints.
DOI: 10.6084/m9.figshare.880573
title: Supp_Table_S3

description: METASTATS data performed to determine significant enrichments or depletions in OTUs in the flocks classified as Light versus those classified as Heavy.
DOI: 10.6084/m9.figshare.880575.v1
title: Table_1

description: Samples analyzed in this study. First letter in sample refers to flock sampled, with F, Light/Heavy flocks; CF, commercial flock individual samples; and RF, research flock individual samples; “W”, refers to week of age.
DOI: 10.6084/m9.figshare.880569
title: Supp_Table_S1

description: Alpha diversity metrics.
DOI: 10.6084/m9.figshare.880571.v1
title: Supp_Table_S2

description: Observed OTUs in the entire dataset.
DOI: 10.6084/m9.figshare.880569.v1
title: Supp_Table_S1

description: Alpha diversity metrics.
DOI: 10.6084/m9.figshare.879927
title: tavg.mat, a Matlab data file with CRU global monthly mean temperature data

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879918
title: precip.mat, a Matlab data file with CRU global total monthly precipitation data

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879956
title: site_climate.mat, a Matlab data file containing site locations and climate data used in McWethy et al. (2013)

description: Matlab .mat file containing location of charcoal sites in Version 2 of the Global Charcoal Database<br>(http://www.gpwg.org/gpwgdb.html), and associated climate data.
DOI: 10.6084/m9.figshare.879862
title: Data and code needed to create Fig. 5 in McWethy et al. 2013, Global Ecology and Biogeography

description: Publication and files needed to recreate Fig. 5 in: McWethy, D.B., P.E. Higuera, C. Whitlock, T.T. Veblen, D.M.J.S. Bowman, G. Cary, S.G. Haberle, R.E. Kean, B.D. Maxwell, M.S. McGlone, G.L.W. Perry, J.M. Wilmshurst, A. Holz, and A. Tepley. 2013. A conceptual framework for predicting temperate ecosystem sensitivity to human impacts on fire regimes. Global Ecology & Biogeography, 22: 900-912.
DOI: 10.6084/m9.figshare.879927.v4
title: tavg.mat, a Matlab data file with CRU global monthly mean temperature data

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879927.v3
title: Matlab data file: CRU global monthly mean temperature

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879956.v3
title: Matlab data file: site locations and climate data used in McWethy et al. (2013)

description: Matlab .mat file containing location of charcoal sites in Version 2 of the Global Charcoal Database<br>(http://www.gpwg.org/gpwgdb.html), and associated climate data.
DOI: 10.6084/m9.figshare.879918.v2
title: Matlab data file: CRU global total monthly precipitation

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879862.v2
title: McWethy et al. 2013, Global Ecology and Biogeography

description: Publication and files needed to recreate Fig. 5.
DOI: 10.6084/m9.figshare.879918.v3
title: precip.mat, a Matlab data file: CRU global total monthly precipitation

description: CRU05 0.5 Degree 1961-1990 Mean Monthly Climatology SEE: http://www.cru.uea.ac.uk/cru/data/hrg/cru05/cru05_intro.html New, M., Hulme, M. & Jones, P. (1999) Representing twentieth century space–time climate variability. Part I: development of a 1961–90 mean monthly terrestrial climatology. Journal of Climate, 12, 829–856.
DOI: 10.6084/m9.figshare.879862.v4
title: Data and code needed to create Fig. 5 in McWethy et al. 2013, Global Ecology and Biogeography

description: Publication and files needed to recreate Fig. 5 in: McWethy, D.B., P.E. Higuera, C. Whitlock, T.T. Veblen, D.M.J.S. Bowman, G. Cary, S.G. Haberle, R.E. Kean, B.D. Maxwell, M.S. McGlone, G.L.W. Perry, J.M. Wilmshurst, A. Holz, and A. Tepley. 2013. A conceptual framework for predicting temperate ecosystem sensitivity to human impacts on fire regimes. Global Ecology & Biogeography, 22: 900-912.
DOI: 10.6084/m9.figshare.879862.v3
title: McWethy et al. 2013, Global Ecology and Biogeography

description: Publication and files needed to recreate Fig. 5.
DOI: 10.6084/m9.figshare.879722.v3
title: Matlab script: Make Fig. 5 in McWethy et al. (2013), sites and regions in climate and geographic space

description: Generates plots of climate space, and points in climate and geographic space. This is specific the WildFIRE PIRE project, as of 1/25/12. *Requires function "climateSpace_region.m"
DOI: 10.6084/m9.figshare.879706
title: KW brain

description: KW head, brain and segmented brain
DOI: 10.6084/m9.figshare.879706.v1
title: KW brain

description: KW head, brain and segmented brain
DOI: 10.6084/m9.figshare.879722.v4
title: Matlab script: Make Fig. 5 in McWethy et al. (2013), sites and regions in climate and geographic space

description: Generates plots of climate space, and points in climate and geographic space. This is specific the WildFIRE PIRE project, as of 1/25/12. *Requires function "climateSpace_region.m"
DOI: 10.6084/m9.figshare.879700
title: BA Brain

description: T1 weighted brain scans of a grapheme-color synesthete.
DOI: 10.6084/m9.figshare.879702
title: Recenzja na temat pracy Analiza finansowa ekonomicznej kondycji na przykładzie jednej instytucji autorstwa Kozub K.

description: Recenzja dotyczy pracy studenta Uniwersytetu Ekonomicznego we Wrocławiu, który zanalizował kondycję finansową wybranej instytucji. W pracy wykorzystano model J. Zieltowa.
DOI: 10.6084/m9.figshare.879699
title: BA brain (and head)

description: Original t1-weighted image of BA head
DOI: 10.6084/m9.figshare.879700.v1
title: BA Brain

description: T1 weighted brain scans of a grapheme-color synesthete.
DOI: 10.6084/m9.figshare.879697
title: Segmented T1-weighted image of BA brain

description: BA brain segmented into white matter, grey matter and cerebrospinal fluid using FSL FAST tool.
DOI: 10.6084/m9.figshare.879698
title: Brain extracted T1-weighted image of BA brain

description: Segmented into grey matter, white matter and cerebrospinal fluid using FSL FAST command.
DOI: 10.6084/m9.figshare.879699.v1
title: BA brain (and head)

description: Original t1-weighted image of BA head
DOI: 10.6084/m9.figshare.879695
title: rawfiles for 16_PKCi_d42G4_chaG80_c380

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.879695.v1
title: rawfiles for 16_PKCi_d42G4_chaG80_c380

description: This data is raw data from flight experiment, see the metadata figshare article for a description. data start at line 21, data is in 4 rows: time, torque, is_laser_on, sequence_ number (meaning depends on the protocol, usually 2 min. periods).
DOI: 10.6084/m9.figshare.879697.v1
title: Segmented T1-weighted image of BA brain

description: BA brain segmented into white matter, grey matter and cerebrospinal fluid using FSL FAST tool.