cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15468/dl.p5zdxv
title: Occurrence Download

description: A dataset containing 3 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ctenomys azarae",
 "HasCoordinate is TRUE"
 ]
}

 The dataset includes 3 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027569-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.qkwc8j
title: Occurrence Download

description: A dataset containing 96337 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is one of (Vespertilionidae, Phyllostomidae)"
 ]
}

 The dataset includes 96337 records from 490 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0027539-251120083545085/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.64eqmc
title: Occurrence Download

description: A dataset containing 4330 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is Antigua and Barbuda",
 "TaxonKey is Tracheophyta"
 ]
}

 The dataset includes 4330 records from 59 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0330983-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tilert
title: Occurrence Download

description: A dataset containing 20370 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "or" : [
 "Country is United States of America",
 "Country is Mexico",
 "Country is Bahamas"
 ]
 },
 "TaxonKey is Aetobatus narinari (Euphrasen, 1790)"
 ]
}

 The dataset includes 20370 records from 75 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000265-171113114016250/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.rx57x8
title: Occurrence Download

description: A dataset containing 82839 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Passerellidae"
 ]
}

 The dataset includes 82839 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0058092-210914110416597/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kwjc79
title: Occurrence Download

description: A dataset containing 2898 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Condylura cristata (Linnaeus, 1758)"
 ]
}

 The dataset includes 2898 records from 85 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0057910-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uqp92q
title: Occurrence Download

description: A dataset containing 5951974 species occurrences available in GBIF matching the query:
{
 "Country" : [
 "is China"
 ]
}

 The dataset includes 5951974 records from 3330 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0331099-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.emsxj6
title: Occurrence Download

description: A dataset containing 124 species occurrences available in GBIF matching the query:
{
 "and" : [
 {
 "and" : [
 {
 "or" : [
 "GadmGid is USA.12_1",
 "Country is one of (American Samoa, Cook Islands, Timor-Leste, Micronesia (Federated States of), Fiji, French Polynesia, Guam, Kiribati, Marshall Islands, Nauru, New Caledonia, Niue, Northern Mariana Islands, Palau, Papua New Guinea, Samoa, Solomon Islands, Tokelau, Tonga, Tuvalu, Vanuatu, Wallis and Futuna)"
 ]
 },
 {
 "not" : {
 "Issue" : [
 "is Country coordinate mismatch"
 ]
 }
 }
 ]
 },
 "TaxonKey is one of (Eviota disrupta Karnella & Lachner, 1981)"
 ]
}

 The dataset includes 124 records from 14 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0000016-250415084134356/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.21227/baja-1j59
title: Coventry-2018

description: Coventry-2018 is a human activity recognition dataset captured by three Panasonic® Grid-EYE (AMG8833) infrared sensors in March 2018. The Grid-EYE sensors represent a 60 field of view scene by an 8 × 8 array named frame. The data streams are synchronized to 10 frames per second and saved as *.csv recordings using the LabVIEW® software. Two layouts are considered in this dataset with different geometry sizes: 1) small layout; and 2) large layout. The three sensors are located 1.5m from the area of interest in the small geometry size, while the distance grows to 2.5m for the large geometry size as illustrated in the dataset image. The dataset consists of 15 gestures distinguished in two categories: 1) single-subject gestures; and 2) double-subject gestures. There exist eight single-subject activities, and seven double-subject activities. Each single-subject gesture is repeated 10 times by three participants, while for double-subject gestures, the three possible combinations of the three subjects are used and similarly, the gestures are repeated 10 times. It needs to be emphasized that the single-subject activities are conducted in both layouts (small layout and large layout), while the double-subject activities are conducted only in the large layout.
DOI: 10.5281/zenodo.10720466
title: Summary statistics for "Epigenetic timing effects on child developmental outcomes"

description: Summary statistics for "Epigenetic timing effects on child developmental outcomes: A longitudinal meta-regression of findings from the Pregnancy And Childhood Epigenetics Consortium".

Each file contians summary statistics for the results of a meta-regression associating DNA methylation at birth or childhood with a child health outcome. The child health outcomes are attention-deficit/hyperactivity disorder symptoms, a general psychopathology factor, sleep duration, BMI or an asthma diagnosis.

See for full details: Neumann, A., Sammallahti, S., Cosin-Tomas, M., Reese, S. E., Suderman, M., Alemany, S., ... & Cecil, C. (2024). Epigenetic timing effects on child developmental outcomes: A longitudinal meta-regression of findings from the Pregnancy and Childhood Epigenetics Consortium. medRxiv, 2024-02.

Each dataset contains the following columns:



cpg DNA methylation site

estimate_birth Difference in health outcome in SD between no or full methylation at birth. (log odds in case of asthma diagnosis)

se_birth Standard Error

pval_birth p value

estimate_childhood Difference in health outcome in SD between no or full methylation in childhood. (log odds in case of asthma diagnosis)

se_childhood Standard Error

pval_childhood p value

estimate_delta Change in associations of DNA methylation with health outcome between DNA methylation assessed at birth and childhood.

se_delta Standard Error

pval_delta p value
DOI: 10.11583/dtu.16691825
title: Ethylene Carbonate Molecular Dynamics

description: This dataset consists of charge densities of individual snapshots from a molecular dynamics trajectory. We insert 8 ethylene carbonate molecules in the simulation box. To quickly explore a large part of the configurational space we put Hookean constraints on the molecular bonds (to maintain molecular identity such that molecules are not torn apart at such high temperature) and run Langevin molecular dynamics with thermostat temperature of 3000 K. The simulation was run for 12380 steps of 0.5 fs. <br> The resulting CHGCAR files have been compressed with lz4 compression and packed in non-compressed tar archives with up to 1000 structures in each. <br> The datasplits json files contain the indices (0-index) of the train, validation and test sets used in the paper "Graph neural networks for fast electron density estimation of molecules, liquids, and solids" <br> To only use equilibrated structures the first 1000 time steps are not used in the paper. Index 0 in the split files corresponds to index 1000 of the CHGCAR files (01000.CHGCAR.lz4).
DOI: 10.17632/34xgdvvv3m.3
title: Dataset for 'A Paper-based Loop-Mediated Isothermal Amplification Assay for Highly Pathogenic Avian Influenza'

description: This dataset contains raw data used during the creation of an assay for detection of highly-pathogenic avian influenza (HPAI) virus type H5 (H5) and used for the publication in the article 'A Paper-based Loop-Mediated Isothermal Amplification Assay for Highly Pathogenic Avian Influenza' published in Scientific Reports.
DOI: 10.25832/when2heat/2023-07-27
title: When2Heat Heating Profiles

description: Simulated hourly country-aggregated heat demand and COP time series. This dataset comprises national time series for representing building heat pumps in power system models. The heat demand of buildings and the coefficient of performance (COP) of heat pumps is calculated for 28 European countries from 2008 to 2023 in an hourly resolution. Heat demand time series for space and water heating are computed by combining gas standard load profiles with spatial temperature and wind speed reanalysis data as well as population geodata. The profiles are year-wise scaled to 1 TWh each. For the years 2008 to 2015, the data is additionally scaled with annual statistics on the final energy consumption for heating. COP time series for different heat sources – air, ground, and groundwater – and different heat sinks – floor heating, radiators, and water heating – are calculated based on COP and heating curves using reanalysis temperature data, spatially aggregated with respect to the heat demand, and corrected based on field measurements. All data processing as well as the download of relevant input data is conducted in python and pandas and has been documented in the Jupyter notebooks linked below. Please also consider and cite our Data Descriptor of the original dataset as well as our Working Paper at on recent updates and extensions of the dataset.
DOI: 10.34885/jdh2-dr22
title: World Checklist of Vascular Plants (WCVP) –Version 12.
DOI: 10.5067/trmm/tmpa/day/7
title: TRMM (TMPA) Precipitation L3 1 day 0.25 degree x 0.25 degree V7
DOI: 10.5281/zenodo.12794779
title: Coccolithophore Abundance, Size, Carbon And Distribution Estimates (CASCADE)

description: CASCADE is a global dataset for 139 extant coccolithophore taxonomic units. CASCADE includes a trait database (size and cellular organic and inorganic carbon contents) and taxonomic-specific global spatiotemporal distributions (Lat/Lon/Depth/Month/Year) of coccolithophore abundance and organic and inorganic carbon stocks. CASCADE covers all ocean basins over the upper 275 meters, spans the years 1964-2019 and includes 33,119 taxonomic-specific abundance observations. Within CASCADE, we characterise the underlying uncertainties due to measurement errors by propagating error estimates between the different studies.

 

Full details of the data set are provided in the associated Scientific Data manuscript. The repository contains five main folders: 1) "Classification", which contains YAML files with synonyms, family-level classifications, and life cycle phase associations and definitions; 2) "Concatenated literature", which contains the merged datasets of size, PIC and POC and which were corrected for taxonomic unit synonyms; 3) "Resampled cellular datasets", which contains the resampled datasets of size, PIC and POC in long format as well as a summary table; 4) "Gridded data sets", which contains gridded datasets of abundance, PIC and POC; 5) "Species lists", which contains spreadsheets of the "common" (>20 obs) and "rare" (<20 obs) species and their number of observations.

 

The CASCADE data set can be easily reproduced using the scripts and data provided in the associated github repository: https://github.com/nanophyto/CASCADE/ (zenodo.12797197)



Correspondence to: Joost de Vries, joost.devries@bristol.ac.uk

v.3 fixes:



actually fixes Guerreiro et al., 2023 longitude issue

replaces negative PIC predictions from GLM with NA (an issue with some small HOL species)


v.2 fixes:

1. The wrongly specified S. neapolitana was removed from synonyms.yml (this species is now S. nana)2. Longitudes were corrected for Guerreiro et al., 20233. A double entry for Dimizia et al., 2015 was fixed4. Units in Sal et al., 2013 were correct to cells/L (previously cells/ml)5. Data from Sal et al., 2013 was re-done, as some species were missing6. Duplicate entries from Baumann et al., 2000 were dropped
DOI: 10.5281/zenodo.14641743
title: Source Data of: Fluctuating magnetism and Pomeranchuk effect in multilayer graphene
DOI: 10.5281/zenodo.14743696
title: Spatially clustered neurons in the bat midbrain encode vocalization categories Dataset

description: This dataset accompanies the article entitled "Spatially clustered neurons in the bat midbrain encode vocalization categories" published in Nature Neuroscience in 2025 (https://doi.org/10.1038/s41593-025-01932-3). This dataset consists of a MATLAB structure containing the preprocessed fluorescent activity of each identified cell, defined by manually drawn ROIs, for each stimulus presentation across bats and recording sites. The data are organized by recording site. Each structure includes subfields for bat identity, stimulus type, matrix dimensions, mean image, and ROI coordinates. Each trace is locked to stimulus onset, using the 'FrametoSecond' subfield to define the time reference.
DOI: 10.5281/zenodo.14927828
title: Dataset for the study "Foundation Models as Assistive Tools in Hydrometeorology: Opportunities, Challenges, and Perspectives"

description: This dataset contains the materials, files, and codes used in the study "Foundation Models as Assistive Tools in Hydrometeorology: Opportunities, Challenges, and Perspectives".
DOI: 10.5281/zenodo.15087104
title: DIA-BERT Source Data and Zenodo files

description: Source Data.xlsx includes the raw data for all figures from the main manuscript and Supplementary Information. The data is organized by each figure in separate sheets within the Excel file.

 

Files.zip contains five seperate Excels:

File Name: File 1

Description: Comparison summary of identification between DIA-NN and DIA-BERT

 

File Name: File 2

Description: Identified peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT

 

File Name: File 3

Description: Parameters for simulated data by modified Synthedia

 

File Name: File 4

Description: Quantification of peptide precursors and proteins using DIA-NN (in library-based mode) and DIA-BERT in combined search

 

File Name: File 5

Description: Comparison of quantification performance on the three-species dataset using DIA-BERT with different quantification models and DIA-NN.
DOI: 10.5281/zenodo.808273
title: Libraries.Io Open Source Repository And Dependency Metadata

description: <strong>What is in this release?</strong>

In this release you will find data about software distributed and/or crafted publicly on the Internet. You will find information about its development, its distribution and its relationship with other software included as a dependency. You will not find any information about the individuals who create and maintain these projects.

Further information and documentation on this data set can be found at https://libraries.io/data

For enquiries please contact data@libraries.io

This dataset contains seven csv files:

<strong>Projects</strong>

A project is a piece of software available on any one of the 33 package managers supported by Libraries.io.

<strong>Versions</strong>

A Libraries.io version is an immutable published version of a Project from a package manager. Not all package managers have a concept of publishing versions, often relying directly on tags/branches from a revision control tool.

<strong>Tags</strong>

A tag is equivalent to a tag in a revision control system. Tags are sometimes used instead of Versions where a package manager does not use the concept of versions. Tags are often semantic version numbers.

<strong>Dependencies</strong>

Dependencies describe the relationship between a project and the software it builds upon. Dependencies belong to Version. Each Version can have different sets of dependencies. Dependencies point at a specific Version or range of versions of other projects.

<strong>Repositories</strong>

A Libraries.io repository represents a publically accessible source code repository from either github.com, gitlab.com or bitbucket.org. Repositories are distinct from Projects, they are not distributed via a package manager and typically an application for end users rather than component to build upon.

<strong>Repository dependencies</strong>

A repository dependency is a dependency upon a Version from a package manager has been specified in a manifest file, either as a manually added dependency committed by a user or listed as a generated dependency listed in a lockfile that has been automatically generated by a package manager and committed.

<strong>Projects with related Repository fields</strong>

This is an alternative projects export that denormalizes a projects related source code repository inline to reduce the need to join between two data sets.

<strong>Licence</strong>

This dataset is released under the Creative Commons Attribution-ShareAlike 4.0 International Licence.

This licence provides the user with the freedom to use, adapt and redistribute this data. In return the user must publish any derivative work under a similarly open licence, attributing Libraries.io as a data source. The full text of the licence is included in the data.

<strong>Access, Attribution and Citation</strong>

The dataset is available to download from Zenodo at https://zenodo.org/record/808273.

Please attribute Libraries.io as a data source by including the words ‘Includes data from Libraries.io’ and reference the Digital Object identifier: 10.5281/Zenodo.808273.
DOI: 10.5517/ccwxsvd
title: CCDC 832035: Experimental Crystal Structure Determination

description: Related Article: O.Seven, M.Bolte|2011|CSD Communication|||
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.6084/m9.figshare.26315374
title: China Food Security Comprehensive Assessment Dataset (CFSAD,2012-2022)

description: In the context of the new development pattern, China's food security is facing new risks, such as insufficient impetus for the sustainable enhancement of its comprehensive production capacity, and the existing grain statistics are fragmented and not comprehensive enough to meet the needs of current food security assessment studies.In this study, we constructed the time-series China Food Security Comprehensive Assessment Dataset (CFSAD,2012-2022), which includes five categories of grain, rice, wheat, corn and soybean, and covers five dimensions of the basic guarantee level, the market operation situation, the scientific and technological support capacity, the resource and environmental conditions, and the level of purchasing power, and includes fourteen indicators,such as the mean value of the risk of price volatility in the grain market,CO2 equivalent emissions by grain production,growth rate of per-mu cash receipts, etc.The dataset will be updated annually, and our dataset enables a more scientific and comprehensive assessment of China's food security situation, which can provide data support for effective government policy making and academic research.
DOI: 10.6084/m9.figshare.28769207
title: Supplementary Material for: Integral Theory Paradigm- common pelvic ligament pathogenesis guides management for Urology, Gynecology, Coloproctology

description: Background The pathophysiology behind this work is the same as for the midurethral sling: collagen-deficient ligaments weaken the closure muscles which contract against them; precise insertion of tapes in the anatomical position of the ligaments (PUL) create new collagen to restore function and cure symptoms. 
Aims/methods To briefly describe how the same collagen-creating system applied to PUL and other ligaments such as uterosacral, can treat common symptoms from Urology, Gynecology, Coloproctology. VIDEO 1 describes 16 practical applications of this system to cure bladder/bowel/pain and tethered vagina syndrome dysfunctions. 

Results Collagen-induced laxity in ligaments and vagina diminishes contractile forces required by pelvic muscles to close urethra and anus for continence; open them for evacuation; stretch bladder base and rectum like a trampoline to prevent stretch receptors prematurely activating micturition and defecation reflexes, perceived cortically as bladder or fecal “urge to go”. The pictorial algorithm summarizes common ligament pathogeneses for prolapse/bladder/bowel/pain dysfunctions, which can be confirmed by mechanical support of PUL for relief of urine loss on coughing, and uterosacral ligaments (USL) for relief of urge and chronic pelvic pain. The same minimally-invasive ligament repairs used for SUI, prolapse, pain/bladder dysfunctions were demonstrated by xray defecography controlled studies to cure fecal incontinence, obstructive defecation, anterior rectal wall intussusception and descending perineal syndrome. Pathophysiology update at: https://atm.amegroups.org/issue/view/1400
DOI: 10.6084/m9.figshare.28776788
title: Supplementary Material for: Urinary myeloid bodies as a biomarker for early diagnosis and monitoring of enzyme replacement therapy in Fabry disease

description: Introduction: The prevalence of urinary myeloid bodies in Fabry disease patients and their correlation with renal involvement remains unclear.
Methods: This single-center, retrospective study included 25 patients with Fabry disease and 27 controls. We analyzed 24-hour urine samples for the presence of urinary myeloid bodies and evaluated clinical data, including serum creatinine, estimated glomerular filtration rate (eGFR), 24-hour urinary protein levels, α-Gal A, and Lyso-GL-3. Seven Fabry patients underwent analysis of urine samples before and after one year of enzyme replacement therapy (ERT). 
Results: Urinary myeloid bodies were detected in 84% of Fabry patients (21 out of 25), with no significant gender differences. None of the healthy controls or patients with other renal disease patients had urinary myeloid bodies. Among the Fabry patients with myeloid bodies, 48% had no proteinuria, and 52% were in CKD1 stage G1. Furthermore, urinary myeloid bodies were detected in four patients under the age of 20, despite the absence of or only minimal proteinuria, and these patients all exhibited a substantial number of myeloid bodies. After one year of ERT, significant reductions in both the count (P=0.043) and area ratio (P=0.028) of myeloid bodies were observed.
Conclusion: Urinary myeloid bodies are specific to Fabry disease and are associated with early renal injury, even in the absence of proteinuria. These findings suggest that urinary myeloid bodies may serve as a non-invasive biomarker for the early diagnosis of Fabry disease and for monitoring the efficacy of ERT.