cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.15156/bio/sh1195642.08fu
title: SH1195642.08FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh676213.07fu
title: SH676213.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15156/bio/sh676214.07fu
title: SH676214.07FU

description: UNITE provides a unified way for delimiting, identifying, communicating, and working with DNA-based Species Hypotheses (SH). All fungal ITS sequences in the international nucleotide sequence databases are clustered to approximately the species level by applying a set of dynamic distance values (<0.5 - 3.0%). All species hypotheses are given a unique, stable name in the form of a DOI, and their taxonomic and ecological annotations are verified through distributed, web-based third-party annotation efforts. SHs are connected to a taxon name and its classification as far as possible (phylum, class, order, etc.) by taking into account identifications for all sequences in the SH. An automatically or manually designated sequence is chosen to represent each such SH. These sequences are released (https://unite.ut.ee/repository.php) for use by the scientific community in, for example, local sequence similarity searches and next-generation sequencing analysis pipelines. The system and the data are updated automatically as the number of public fungal ITS sequences grows.
DOI: 10.15468/dl.zma936
title: Occurrence Download

description: A dataset containing 230 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is one of (Observation, Machine Observation, Human Observation, Occurrence evidence)",
 "Continent is South America",
 "Country is Colombia",
 "OccurrenceStatus is Present",
 "TaxonKey is Mustela frenata Lichtenstein, 1831",
 "Year 2000-2024"
 ]
}

 The dataset includes 230 records from 34 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159583-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.mnmx4y
title: Occurrence Download

description: A dataset containing 11517 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Abies balsamea (L.) Mill.)"
 ]
}

 The dataset includes 11517 records from 151 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308757-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.w5bcxf
title: Occurrence Download

description: A dataset containing 9 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Epidendrum palmidium Hágsater"
 ]
}

 The dataset includes 9 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0159584-240321170329656/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.92s24p
title: Occurrence Download

description: A dataset containing 99 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Artocarpus nobilis Thwaites"
 ]
}

 The dataset includes 99 records from 21 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0019479-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ktvvb7
title: Occurrence Download

description: A dataset containing 110 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Espeletia schultesiana Cuatrec."
 ]
}

 The dataset includes 110 records from 18 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007717-171124123535762/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.uxaq86
title: Occurrence Download

description: A dataset containing 130757 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Beta vulgaris L."
 ]
}

 The dataset includes 130757 records from 418 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308760-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.k2r2wj
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Ranunculus subhomophyllus (Halácsy) Vierh.",
 "HasCoordinate is true",
 "Continent is Europe",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 2000",
 "CoordinateUncertaintyInMeters is less than 10000"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0005430-240229165702484/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.kmylx7
title: Occurrence Download

description: A dataset containing 56 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lonchocarpus eriophyllus Benth."
 ]
}

 The dataset includes 56 records from 15 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0007718-150615163101818/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.spvxjc
title: Occurrence Download

description: A dataset containing 6933 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Spinacia oleracea L."
 ]
}

 The dataset includes 6933 records from 251 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0308762-200613084148143/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.jp25bv
title: Occurrence Download

description: A dataset containing 1241325 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is Aglais urticae (Linnaeus, 1758)",
 "BasisOfRecord is Human Observation",
 "HasCoordinate is true"
 ]
}

 The dataset includes 1241325 records from 1672 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0059503-231120084113126/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.7zv8nd
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "TaxonKey is one of (Rineloricaria misionera)",
 "BasisOfRecord is one of (Specimen, Literature Occurrence, Human Observation, Observation)",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "Year is greater than or equal to 1991",
 "Year is less than or equal to 2025"
 ]
}

 The dataset includes 2 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017247-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.tqd8nw
title: Occurrence Download

description: A dataset containing 2097 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Alkanna tinctoria tinctoria"
 ]
}

 The dataset includes 2097 records from 120 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0017246-250827131500795/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.17632/sf7zywbswy
title: Therapeutic base editing of HBG promoter to reactivate high level of γ-globin expression with no detectable off-target mutations

description: raw FACS data of fetal hemoglobin expression in HSPCs and bone marrow transplantation experiments in NBSGW mice
DOI: 10.17632/28kr9v2tt9
title: Infrared Image Human Detection for Search and Rescue Processes (SARHuman)

description: The environments we used for simulating post-disaster ruins were cluttered and rocky. Most of our images were shot at night to simulate the poorly lit interior of the ruins. Each image has 1-3 bodies, which are in different poses. The photographed object is obscured by debris, such as rocks, to simulate what actually happens in a ruined environment. We also photographed the objects from far and near, ensuring that there would be human objects at different scales in the dataset. In addition, we consider that a SAR robot that can search deep into the ruins will not be too large and can carry an infrared camera with limited resolution, so we use a FLIR infrared camera with a resolution of 320×320 to capture images.
We removed blurred images. We continuously adjusted the captured images so that the images in each background were evenly distributed. We obtained a dataset containing 5189 infrared images named SARHuman. Here are some examples of the dataset.
DOI: 10.17632/sf7zywbswy.2
title: Therapeutic base editing of HBG promoter to reactivate high level of γ-globin expression with no detectable off-target mutations

description: raw FACS data of fetal hemoglobin expression in HSPCs and bone marrow transplantation experiments in NBSGW mice
DOI: 10.15493/dea.mims.26052315
title: Dedicated West Coast Cetacean Distribution and Abundance Survey on the Algoa Voyage 188, November 2011

description: This dedicated West Coast Cetacean Distribution and Abundance Survey was conducted on the Algoa Voyage 188 from 10 to 20 November, 2011.The main objective of this cruise was to develop and test approaches to a dedicated cetacean cruise. This objective, along with the research aims and proposed methodologies are consistent with internationally acceptable protocols. This work provided hands on experience of logistical and technical cetacean specific problems with dedicated cetacean cruises. This cruise was conducted from the Algoa and two smaller boats. This work precluded the long-term monitoring surveys that were conducted annually from 2012.
DOI: 10.17632/28kr9v2tt9.1
title: Infrared Image Human Detection for Search and Rescue Processes (SARHuman)

description: The environments we used for simulating post-disaster ruins were cluttered and rocky. Most of our images were shot at night to simulate the poorly lit interior of the ruins. Each image has 1-3 bodies, which are in different poses. The photographed object is obscured by debris, such as rocks, to simulate what actually happens in a ruined environment. We also photographed the objects from far and near, ensuring that there would be human objects at different scales in the dataset. In addition, we consider that a SAR robot that can search deep into the ruins will not be too large and can carry an infrared camera with limited resolution, so we use a FLIR infrared camera with a resolution of 320×320 to capture images.
We removed blurred images. We continuously adjusted the captured images so that the images in each background were evenly distributed. We obtained a dataset containing 5189 infrared images named SARHuman. Here are some examples of the dataset.
DOI: 10.17632/xf4pg7gp72
title: HSD17B13 Knockdown in CDAA-HFD mice

description: Data for manuscript titled "HSD17B13 Deficiency Modulates Interferon Signaling to Ameliorate Metabolic Dysfunction-Associated Steatohepatitis Fibrosis"
DOI: 10.15493/dea.mims.26052220
title: Mooring Cruise on the Algoa Voyage 199, June 2013

description: The Mooring Cruise was conducted on the Algoa Voyage 199 from 29 June - 3 July, 2013. The area covered includes Slangkop, off of Cape Town, Western Cape, South Africa to Port Edward, south of Durban, KwaZulu-Natal, South Africa.
DOI: 10.15493/dea.mims.26052247
title: African Coelacanth Ecosystem Programme (ACEP) from Algoa Voyage 176, January 2010

description: The Algoa sailed from Durban on 22 January 2010 to conduct a hydrographic survey of the Natal Bight as part of the African Coelacanth Ecosystem Programme (ACEP) II. A total of 16 shore-normal transects were occupied between Scottburgh and St. Lucia.The sampling locations are indicated in Figure 1 of the Cruise Report. The aim of the synoptic survey was to determine the nutrient sources of the Natal Bight ecosystem, and to characterise the focus sites across the Bight. Unfortunately, due to instrument failure, a planned ADCP transect between St. Lucia and Durban could not be completed.
DOI: 10.17632/vhtv4f5fns
title: Regulatory B cells

description: The identification of surface markers CD1d, CD5, CD21, and CD19 on regulatory B cells in the spleen of C57BL/6 mice following infection with Plasmodium berghei ANKA or Plasmodium yoelii YM is crucial for understanding the immune response. This study aims to elucidate the role of these surface markers in the regulation of B cell activity during malaria infection.
DOI: 10.17632/xf4pg7gp72.1
title: HSD17B13 Knockdown in CDAA-HFD mice

description: Data for manuscript titled "HSD17B13 Deficiency Modulates Interferon Signaling to Ameliorate Metabolic Dysfunction-Associated Steatohepatitis Fibrosis"
DOI: 10.15493/dea.mims.26052227
title: South Atlantic Meridional Overturning Circulation Basin-wide Array (SAMBA) Monitoring Line in the South-East Atlantic Ocean on Algoa Voyage 210, September 2014

description: The South Atlantic Meridional Overturning Circulation Basin-wide Array (SAMBA) Monitoring Line in the South-East Atlantic Ocean was conducted on the Algoa Voyage 210, 15 to 29 September, 2014. This cruise had a primary scientific objective of extending the SAMBA mooring line, the offshore section of the Cape Point long-term monitoring line, and deploying the four offshore tall moorings. Four tall moorings were recovered, serviced and re-deployed on the SAMBA transect, incorporating ADCP’s and Sea-Bird Microcats.
DOI: 10.17632/vhtv4f5fns.1
title: Regulatory B cells

description: The identification of surface markers CD1d, CD5, CD21, and CD19 on regulatory B cells in the spleen of C57BL/6 mice following infection with Plasmodium berghei ANKA or Plasmodium yoelii YM is crucial for understanding the immune response. This study aims to elucidate the role of these surface markers in the regulation of B cell activity during malaria infection.
DOI: 10.17632/xvcptbsww6
title: A systematic review of symmetrical drug-related intertriginous and flexural exanthema

description: Supplemental Tables for A systematic review of symmetrical drug-related intertriginous and flexural erythema
DOI: 10.17632/xvcptbsww6.2
title: A systematic review of symmetrical drug-related intertriginous and flexural exanthema

description: Supplemental Tables for A systematic review of symmetrical drug-related intertriginous and flexural erythema
DOI: 10.15493/dea.mims.26052218
title: Western Indian Ocean Sustainable Ecosystem Alliance Cruise on Algoa Voyage 197, April 2013

description: The Western Indian Ocean Sustainable Ecosystem Alliance Cruise was conducted on the Algoa Voyage 197, 1 to 29 April, 2013. Long-term offshore ecosystem monitoring in the SWIO started with the establishment of a shallow (18m) UTR network by ACEP. The ASCLME project adopted the UTR network and together with NOAA, NIOZ, DEA and ACEP instituted an annual mooring cruise. A wide range of state-of-the-art in-situ instruments from various international programmes and initiatives were deployed during the ASCLME cruises. ASCLME's partnership with NOAA, NIOZ, DEA, BCRE, ACEP and IFREMER are helping to delpoy and maintain sophisticated long-term monitoring equipment through the region. These multi-national, multi-institutional and multi-disciplinary cruises further enhance regional capacity through joint training activities, access to data and information sharing.
DOI: 10.15493/dea.mims.26052234
title: West Coast Cetacean Distribution and Abundance Survey on the Algoa Voyage 219, October 2015

description: The West Coast Cetacean Distribution and Abundance Survey was conducted on the Algoa Voyage 219, 28 October to 06 November 2015. The cruise operated on the shelf and slope regions off the west coast of South Africa, between Dassen Island and Groenriviermond. This cruise was undertaken for data collection as part of a collaborative project led by the Department of Environmental Affairs (DEA) in collaboration with the Whale Unit, Mammal Research Institute of the University of Pretoria, Department of Agriculture, Forestry and Fisheries (DAFF), National Oceanic and Atmospheric Administration (USA), Aqualie Institute (Brazil) and Oregon State University (USA). The greater programme is titled "The ecology of Humpback whales Megaptera novaeangliae in South Africa" and has two components, the east coast and west coast components. This cruise focused on the west coast humpback whales.
DOI: 10.15493/dea.mims.26052219
title: Port St Johns Conductivity Temperature Depth (CTD) and Bathymetry Survey on Algoa Voyage 198, May 2013

description: The Port St Johns Conductivity, Temperature, Depth (CTD) and Bathymetry Survey was conducted on the Algoa Voyage 198, 8 May - 13 May, 2013. This cruise has two scientific objectives: (1) to investigate the dynamics of the Port St. Johns eddy and biological implications and (2) to investigate the existence of mesoscale eddies in the Agulhas Current. In the case of the former, Oceans and Coasts was asked to provide input to the recent spate of shark attacks off Port St. Johns. Very little is known about the oceanography except that Roberts et al (2010) discovered during a cruise a lee-trapped cyclonic eddy off Port St. Johns that caused substantial slope upwelling. The cold upwelled water is nutrient-rich and appears to provide a biological pump to the local ecosystem. This cruise will deploy an ADCP in a depth of approximately 80 m to determine the frequency of appearance of this eddy coupled with Conductivity, Temperature, Depth (CTD) lines to measure the biological implications. In the case of the second objective - offshore mesoscale eddies interact strongly with the Agulhas Current, and have been shown to initiate the Natal Pulse, cause early retroreflections, and influence slope upwelling at Port Alfred. They also act as vectors carrying biological material to areas along their trajectory and therefore play a role in shaping biodiversity patterns. A recent study however using altimetry and VSP drifters indicates that mesoscale eddies from both Madagascar and the Mozambique Channel tend to move down the Agulhas Current on its offshore boundary, but that these eddies dissapate southwest of East London. On this cruise we investigated whether mesoscale eddies exist in the lower region of the Agulhas Current using in situ measurements. The results may have a profound impact on local altimetry processing and our understanding of the regional oceanography.
DOI: 10.15493/dea.mims.26052246
title: Leg 1 of the African Coelacanth Ecosystem Programme (ACEP) II on the Algoa Voyage 177, July 2010

description: The Algoa sailed from Durban on 16 July 2010 to conduct a hydrographic survey of the Natal Bight as part of the winter African Coelacanth Ecosystem Programme (ACEP) II. A total of 16 shore-normal transects were occupied between Scottburgh and St. Lucia. The aim of the synoptic survey was to determine the nutrient sources of the Natal Bight ecosystem, and to characterise the focus sites across the Bight.
DOI: 10.15493/dea.mims.26052225
title: South Coast Mooring Cruise on the Algoa Voyage 208, July 2014

description: The South Coast Mooring Cruise was conducted on the Algoa Voyage 208, 9 to 24 July 2014. Two ADCP current moorings and a thermistor chain were deployed along the Cape Point Monitoring line. Cape Recife ADCP current mooring was recovered. Four ADCP current moorings were recovered and serviced in Algoa Bay. Port St. Johns ADCP current mooring was recovered. Port St. Johns Conductivity, Temperature, Depth (CTD)/bongo survey lines were completed. SVP drifters in the Agulhas Current core were deployed. ALEX real-time surface buoy and current meter mooring of Port Edward were deployed.The South Coast Mooring Cruise had two scientific objectives: (1) Service, maintain and extend the in situ operational oceanography network currently deployed around South Africa and (2) to investigate the dynamics of the Port St Johns eddy and biological implications. Between 1988 and 2011, environmental and plankton sampling was conducted every summer along the South Coast during the annual pelagic spawner biomass surveys. Data collected during these cruises has provided valuable insight into environmental change in this region. There has been significant decline in copepod biomass on both the western and central Agulhas Bank over the past two decades, as well as a decline in the proportion of the large dominant species Calanus agulhensis, resulting in a shift towards a smaller copepod-dominated community. These changes are thought to have been largely driven by predation by planktivorous fish, which have increased in biomass since the mid-1990s, but increasing sea temperatures have also played a role. It is vital that we continue to monitor the environment and plakton community in key areas off the South Coast to extend our time-monitor series of data and to gain further insight into the possible effects of climate change and variability on this important Agulhas Bank shelf system, which straddles both the Benguela Current and Agulhas Current Large Marine Ecosystems. Monitoring lines off Walker Bay, Mossel Bay and Port Alfred have been selected to represent the western, central and eastern Agulhas Bank respectively. Monitoring in these areas will detect variability in important oceanographic features, such as the cold ridge and divergent upwelling, and will also span key spawning areas of pelagic fish. The Algoa Bay and Port St John monitoring line has been added to the south coast mooring cruises during 2013 and these long term lines will be completed to add to the above mentioned lines.