cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.10007462
title: Dietary effect of low fishmeal aquafeed on gut microbiota of olive flounder (Paralichthys olivaceus) at different growth stages (MBO3_2019_06_0239_raw data)

description: This study was conducted to investigate the long-term effect of a low fishmeal (FM) diet comprising plant-based protein sources (PPS) on changes of gut microbial diversity in olive flounder (<i>Paralichthys olivaceus</i>) over the course of life. Two experimental diets were prepared to contain 74% FM (control) or 52% FM with 22% PPS (30% FM replacement, FM30). Fish were fed one of the two experimental diets for eight months, and we collected the midgut contents to analyze the gut bacterial community by Illumina Miseq based on the metagenomic sequences in the V3-V4 regions of 16S rRNA. We found that there were nine dominant phyla, which in turn presented Proteobacteria, Firmicutes, and Actinobacteria as the three major phyla in the gut microbiota of the flounder. At genus level, the dominant genera were <i>Delftia</i>, <i>Prevotella</i>, and <i>Chthoniobacter</i> at the juvenile stage (below 100 g/fish); <i>Chthoniobacter</i>, <i>Bacillus</i>, and <i>Bradyrhizobium</i> at the grower stage (400 g/fish); <i>Chthoniobacter</i>, <i>Bacillus</i>, and <i>Delftia</i> at the sub-adult stage (800 g/fish); and <i>Lactobacillus</i>, and <i>Prevotella</i> at the adult stage (over 1,000 g/fish). The microbial diversity in olive flounders arched from the juvenile and sub-adult stage and reached a plateau thereafter. The fish fed the FM30 diet significantly had an increased abundance of <i>Lactobacillus</i> and <i>Photobacterium</i> and had less abundance of <i>Prevotella</i> and <i>Paraprevotella</i> than the control. However, the effect of dietary PPS was not significant on total microbial richness, indicating no negative effect as feed sources on the intestinal microbiota in olive flounder. These results indicate that the life stage of olive flounder is more important in modulating intestinal microbiota than is the diet. It could also be concluded that dietary PPS might be used as a potential fishmeal alternative without any compromising effects on microbial diversity of olive flounder for long-term feeding.
DOI: 10.6084/m9.figshare.10007459
title: Historical_data_set and parameters of a two-area system

description: The dataset contains the generated historical data of DG output and load demand for the two-area system in the study.<br>
DOI: 10.6084/m9.figshare.10007462.v1
title: Dietary effect of low fishmeal aquafeed on gut microbiota of olive flounder (Paralichthys olivaceus) at different growth stages (MBO3_2019_06_0239_raw data)

description: This study was conducted to investigate the long-term effect of a low fishmeal (FM) diet comprising plant-based protein sources (PPS) on changes of gut microbial diversity in olive flounder (<i>Paralichthys olivaceus</i>) over the course of life. Two experimental diets were prepared to contain 74% FM (control) or 52% FM with 22% PPS (30% FM replacement, FM30). Fish were fed one of the two experimental diets for eight months, and we collected the midgut contents to analyze the gut bacterial community by Illumina Miseq based on the metagenomic sequences in the V3-V4 regions of 16S rRNA. We found that there were nine dominant phyla, which in turn presented Proteobacteria, Firmicutes, and Actinobacteria as the three major phyla in the gut microbiota of the flounder. At genus level, the dominant genera were <i>Delftia</i>, <i>Prevotella</i>, and <i>Chthoniobacter</i> at the juvenile stage (below 100 g/fish); <i>Chthoniobacter</i>, <i>Bacillus</i>, and <i>Bradyrhizobium</i> at the grower stage (400 g/fish); <i>Chthoniobacter</i>, <i>Bacillus</i>, and <i>Delftia</i> at the sub-adult stage (800 g/fish); and <i>Lactobacillus</i>, and <i>Prevotella</i> at the adult stage (over 1,000 g/fish). The microbial diversity in olive flounders arched from the juvenile and sub-adult stage and reached a plateau thereafter. The fish fed the FM30 diet significantly had an increased abundance of <i>Lactobacillus</i> and <i>Photobacterium</i> and had less abundance of <i>Prevotella</i> and <i>Paraprevotella</i> than the control. However, the effect of dietary PPS was not significant on total microbial richness, indicating no negative effect as feed sources on the intestinal microbiota in olive flounder. These results indicate that the life stage of olive flounder is more important in modulating intestinal microbiota than is the diet. It could also be concluded that dietary PPS might be used as a potential fishmeal alternative without any compromising effects on microbial diversity of olive flounder for long-term feeding.
DOI: 10.6084/m9.figshare.10007453
title: Historical_data_set.zip

description: It contains the generated historical data for the two-area system in the study.
DOI: 10.6084/m9.figshare.10007396
title: Life history and host range determination of <i>Paectes</i> n. sp. – a potential classical biological control agent of Brazilian peppertree in the United States

description: The life history and host range of the South American defoliator <i>Paectes</i> n. sp. (Lepidoptera: Euteliidae) was evaluated to determine its suitability for classical biological control of invasive Brazilian peppertree, <i>Schinus terebinthifolia,</i> in the U.S.A. The genus <i>Paectes</i> is well represented in both Florida and South America. We used DNA barcoding to assign our <i>Paectes</i> collections to species. However, this method did not match any known species of this genus. Larvae were collected feeding on the target weed in Brazil in June 2015 and were colonised under quarantine with mating pairs. Larval no-choice host range tests were conducted on nine members of the family Anacardiaceae, including native, ornamental, and commercial species. Larvae completed development on all species except <i>Anacardium occidentale</i> and <i>Mangifera indica</i>, although survival and development time differed significantly among species. Multiple generation testing was conducted using survivors of no-choice tests. Non-target species <i>Schinus molle</i>, <i>Rhus typhina</i>, and <i>Cotinus coggygria</i> produced F<sub>1</sub> adults, although only the target weed produced F<sub>2</sub> adults. The results of the testing suggest that although <i>Paectes</i> n. sp. is only capable of completing multiple generations on the target weed, <i>Paectes</i> larvae consume and complete at least one generation on a number of native and commercial Anacardiaceae species. Due to its relatively broad host range, and because congener species feed on the weed in the invaded range, <i>Paectes</i> n. sp. will not be developed as a classical biological control of Brazilian peppertree in the U.S.A.
DOI: 10.6084/m9.figshare.10007453.v1
title: Historical_data_set.zip

description: It contains the generated historical data for the two-area system in the study.
DOI: 10.6084/m9.figshare.10007459.v1
title: Historical_data_set.zip

description: The dataset contains the generated historical data of DG output and load demand of the two-area system in the study.<br>
DOI: 10.6084/m9.figshare.10007396.v1
title: Life history and host range determination of <i>Paectes</i> n. sp. – a potential classical biological control agent of Brazilian peppertree in the United States

description: The life history and host range of the South American defoliator <i>Paectes</i> n. sp. (Lepidoptera: Euteliidae) was evaluated to determine its suitability for classical biological control of invasive Brazilian peppertree, <i>Schinus terebinthifolia,</i> in the U.S.A. The genus <i>Paectes</i> is well represented in both Florida and South America. We used DNA barcoding to assign our <i>Paectes</i> collections to species. However, this method did not match any known species of this genus. Larvae were collected feeding on the target weed in Brazil in June 2015 and were colonised under quarantine with mating pairs. Larval no-choice host range tests were conducted on nine members of the family Anacardiaceae, including native, ornamental, and commercial species. Larvae completed development on all species except <i>Anacardium occidentale</i> and <i>Mangifera indica</i>, although survival and development time differed significantly among species. Multiple generation testing was conducted using survivors of no-choice tests. Non-target species <i>Schinus molle</i>, <i>Rhus typhina</i>, and <i>Cotinus coggygria</i> produced F<sub>1</sub> adults, although only the target weed produced F<sub>2</sub> adults. The results of the testing suggest that although <i>Paectes</i> n. sp. is only capable of completing multiple generations on the target weed, <i>Paectes</i> larvae consume and complete at least one generation on a number of native and commercial Anacardiaceae species. Due to its relatively broad host range, and because congener species feed on the weed in the invaded range, <i>Paectes</i> n. sp. will not be developed as a classical biological control of Brazilian peppertree in the U.S.A.
DOI: 10.6084/m9.figshare.10007459.v2
title: Historical_data_set.zip

description: The dataset contains the generated historical data of DG output and load demand for the two-area system in the study.<br>
DOI: 10.6084/m9.figshare.10007330
title: patients-MEFV-20180510.xlsx

description: MEFV muations in sJIA patients
DOI: 10.6084/m9.figshare.10007333
title: healthy controls MEFV.xlsx

description: MEFV mutations in healthy controls
DOI: 10.6084/m9.figshare.10007459.v4
title: Historical_data_set and parameters of a two-area system

description: The dataset contains the generated historical data of DG output and load demand for the two-area system in the study.<br>
DOI: 10.6084/m9.figshare.10007459.v3
title: Historical_data_set and parameters of a two-area system

description: The dataset contains the generated historical data of DG output and load demand for the two-area system in the study.<br>
DOI: 10.6084/m9.figshare.10007273
title: 11 MEFV in healthy controls.xlsx

description: MEFV mutations in healthy controls
DOI: 10.6084/m9.figshare.10007330.v1
title: 111例数据-MEFV-20180510.xlsx

description: MEFV muations in sJIA patients
DOI: 10.6084/m9.figshare.10007273.v1
title: 11 MEFV in healthy controls.xlsx

description: MEFV mutations in healthy controls
DOI: 10.6084/m9.figshare.10007237
title: Phragmites control experiment_Rohal et al. 2019

description: Data from a 5 year Phragmites management experiment in Great Salt Lake, Utah. Published in Ecology and Evolution in 2019. <br>
DOI: 10.6084/m9.figshare.10007237.v1
title: Phragmites control experiment_Rohal et al. 2019

description: Data from a 5 year Phragmites management experiment in Great Salt Lake, Utah. Published in Ecology and Evolution in 2019. <br>
DOI: 10.6084/m9.figshare.10007246
title: A remarkable example of suspected Batesian mimicry of Gaboon Vipers (Reptilia: Viperidae: <i>Bitis gabonica</i>) by Congolese Giant Toads (Amphibia: Bufonidae: <i>Sclerophrys channingi</i>)

description: Batesian mimicry is a phenomenon in nature whereby a non-toxic animal emulates a noxious one, seeking to deter predators by deception. This type of mimicry occurs in many animals, with numerous documented examples of invertebrates, harmless squamates, and even birds that mimic venomous snakes. However, no observations of anurans mimicking venomous snakes have been reported. Based on comparative data from colour pattern, morphology, geographic distribution and behaviour, we propose that the Congolese Giant Toad (<i>Sclerophrys channingi</i>), endemic to Democratic Republic of Congo, is a Batesian mimic of the geographically widespread Gaboon Viper (<i>Bitis gabonica</i>). Although the colour pattern similarity between these taxa is not an exact match, aposematism and precise imitation are not required for Batesian mimicry to be effective, especially when the model (<i>B. gabonica</i>) is dangerously venomous and carefully avoided by other vertebrates. Given the morphological similarity between <i>S. channingi</i> and two other African toad species (<i>S. brauni</i> and <i>S. superciliaris</i>) that are sympatric with <i>B. gabonica</i> and its sister taxon (<i>B. rhinoceros</i>), similar examples of Batesian mimicry are likely.
DOI: 10.6084/m9.figshare.10007246.v1
title: A remarkable example of suspected Batesian mimicry of Gaboon Vipers (Reptilia: Viperidae: <i>Bitis gabonica</i>) by Congolese Giant Toads (Amphibia: Bufonidae: <i>Sclerophrys channingi</i>)

description: Batesian mimicry is a phenomenon in nature whereby a non-toxic animal emulates a noxious one, seeking to deter predators by deception. This type of mimicry occurs in many animals, with numerous documented examples of invertebrates, harmless squamates, and even birds that mimic venomous snakes. However, no observations of anurans mimicking venomous snakes have been reported. Based on comparative data from colour pattern, morphology, geographic distribution and behaviour, we propose that the Congolese Giant Toad (<i>Sclerophrys channingi</i>), endemic to Democratic Republic of Congo, is a Batesian mimic of the geographically widespread Gaboon Viper (<i>Bitis gabonica</i>). Although the colour pattern similarity between these taxa is not an exact match, aposematism and precise imitation are not required for Batesian mimicry to be effective, especially when the model (<i>B. gabonica</i>) is dangerously venomous and carefully avoided by other vertebrates. Given the morphological similarity between <i>S. channingi</i> and two other African toad species (<i>S. brauni</i> and <i>S. superciliaris</i>) that are sympatric with <i>B. gabonica</i> and its sister taxon (<i>B. rhinoceros</i>), similar examples of Batesian mimicry are likely.
DOI: 10.25375/uct.10007153
title: ROER4D Chapter 1 - Appendix 1

description: This document serves as the Appendix 1 of the ROER4D edited volume<em> Chapter 1: </em> <em>Research on Open Educational Resources for Development in the Global South: Project landscape</em>. It contains appendices including lists of the researchers, research associates and network hub members involved in the ROER4D project; a list of the data collection methods used in the project; and a list of the sub-projects by discipline and sector.
DOI: 10.25375/uct.10007153.v1
title: ROER4D Chapter 1 - Appendix 1

description: This document serves as the Appendix 1 of the ROER4D edited volume<em> Chapter 1: </em> <em>Research on Open Educational Resources for Development in the Global South: Project landscape</em>. It contains appendices including lists of the researchers, research associates and network hub members involved in the ROER4D project; a list of the data collection methods used in the project; and a list of the sub-projects by discipline and sector.
DOI: 10.25375/uct.10007123
title: ROER4D Chapter 11 - Appendix 1

description: This document serves as the Appendix 1 of the ROER4D edited volume<em> Chapter 11: Cultural-historical factors influencing OER adoption in Mongolia’s higher education sector</em>. It contains the aggregated data that underly the analysis presented in the chapter.
DOI: 10.25375/uct.10007123.v1
title: ROER4D Chapter 11 - Appendix 1

description: This document serves as the Appendix 1 of the ROER4D edited volume<em> Chapter 11: Cultural-historical factors influencing OER adoption in Mongolia’s higher education sector</em>. It contains the aggregated data that underly the analysis presented in the chapter.
DOI: 10.6084/m9.figshare.10006994
title: Camargo-Cely and Collin Body condition.xlsx

description: These are the datasets from a paper entitled "<b>Combined effects of temperature, salinity and diet simulating upwelling and non-upwelling seasons alter life-history characteristics of a tropical invertebrate"</b> for publication in Ecology and Evolution. They describe the effects of different temperatures, salinity and diet on the growth and reproduction of a marine snail in a factorial laboratory experiment.<b></b>
DOI: 10.6084/m9.figshare.10007024
title: A comprehensive framework for studying diffusion patterns of imported dengue with individual-based movement data

description: There is the data of global population density and some intermediate data to reprodece our research. We propose a comprehensive framework at a fine scale to establish the disease transmission network and a mathematical model, which constructs "source-sink" links between the imported and indigenous cases on a regular grid with a spatial resolution of 1 km to explore the diffusion pattern and spatiotemporal heterogeneity of imported cases.
DOI: 10.6084/m9.figshare.10006994.v1
title: Camargo-Cely and Collin Body condition.xlsx

description: These are the datasets from a paper entitled "<b>Combined effects of temperature, salinity and diet simulating upwelling and non-upwelling seasons alter life-history characteristics of a tropical invertebrate"</b> for publication in Ecology and Evolution. They describe the effects of different temperatures, salinity and diet on the growth and reproduction of a marine snail in a factorial laboratory experiment.<b></b>
DOI: 10.6084/m9.figshare.10007024.v1
title: A comprehensive framework for studying diffusion patterns of imported dengue with individual-based movement data

description: There is the data of global population density and some intermediate data to reprodece our research. We propose a comprehensive framework at a fine scale to establish the disease transmission network and a mathematical model, which constructs "source-sink" links between the imported and indigenous cases on a regular grid with a spatial resolution of 1 km to explore the diffusion pattern and spatiotemporal heterogeneity of imported cases.
DOI: 10.6084/m9.figshare.10006829
title: Supplementary Data 10

description: Sequence of disease- and environmental associated genes.
DOI: 10.6084/m9.figshare.10006796
title: Article Data for 18 mixtures.zip

description: The data include the experimental VLE data of mixtures and the predicted results of models. For the saturated and unsaturated densities, experimental data and corresponding predictions are also listed in the Excel.
DOI: 10.6084/m9.figshare.10006802
title: Borgers_2019_Supplementary-Data-set.xlsx

description: Data set S1. List of BCG Danish transposon insertion mutants (Excel file: .xls)
DOI: 10.6084/m9.figshare.10006796.v1
title: Article Data for 18 mixtures.zip

description: The data include the experimental VLE data of mixtures and the predicted results of models. For the saturated and unsaturated densities, experimental data and corresponding predictions are also listed in the Excel.
DOI: 10.6084/m9.figshare.10006802.v1
title: Borgers_2019_Supplementary-Data-set.xlsx

description: Data set S1. List of BCG Danish transposon insertion mutants (Excel file: .xls)
DOI: 10.6084/m9.figshare.10006766
title: Supplementary Data 7

description: Pan-genome analysis listing all genes from taxa in the discovery dataset (753 isolates) and two references (K96243 and an Australian outgroup Bp668).
DOI: 10.6084/m9.figshare.10006766.v1
title: Supplementary Data 7

description: Pan-genome analysis listing all genes from taxa in the discovery dataset (753 isolates) and two references (K96243 and an Australian outgroup Bp668).
DOI: 10.25375/uct.10006736
title: ROER4D Bibliography - Archived spreadsheet

description: This resource is an archived version of the active ROER4D bibliography. It contains content up until December 2017, cleaned and enhanced by an external Bibliographic Consultant. The live version of the ROER4D Bibliography can be accessed in the references section.<br>
DOI: 10.6084/m9.figshare.10006715
title: 1324 Prison Suicides in 10 Countries in South America: Incidence, relative Risks, and ecological Factors

description: A Dataset exploring suicide counts in South American Prisons. The set contains suicide and population counts divided by female and male gender between 2000 and 2017 in the federal prisons of Argentina, the Palmasola prison in Bolivia, all public prisons in Brazil, Chile, Colombia, Ecuador, Guyana, Paraguay, Perú, and Uruguay. The set also contains rates of occupancy, rates of incarceration, and suicide and population counts for the general population of the same countries.
DOI: 10.25375/uct.10006736.v1
title: ROER4D Bibliography - Archived spreadsheet

description: This resource is an archived version of the active ROER4D bibliography. It contains content up until December 2017, cleaned and enhanced by an external Bibliographic Consultant. The live version of the ROER4D Bibliography can be accessed in the references section.<br>
DOI: 10.6084/m9.figshare.10006679
title: PONE-D-18-37120-original data.xlsx

description: Three different sources of adverse event/adverse drug reation about the Chinese patent medicine
DOI: 10.6084/m9.figshare.10006655
title: RadiolRawdata.xlsx

description: Data acquired from medical students and interns regarding the perception of medical school radiology education, as well as their results in an imaging interpretation test.<br>
DOI: 10.6084/m9.figshare.10006655.v1
title: RadiolRawdata.xlsx

description: Data acquired from medical students and interns regarding the perception of medical school radiology education, as well as their results in an imaging interpretation test.<br>
DOI: 10.6084/m9.figshare.10006679.v2
title: PONE-D-18-37120-original data.xlsx

description: Three different sources of adverse event/adverse drug reation about the Chinese patent medicine
DOI: 10.6084/m9.figshare.10006682.v1
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.6084/m9.figshare.10006637
title: Plant_Chacklist_Caatinga

description: Appedices of the paper "An updated and taxonomically verified plant checklist of the Brazilian Caatinga seasonally dry forests and woodlands reveals high species richness and endemism"
DOI: 10.6084/m9.figshare.10006679.v1
title: PONE-D-18-37120-original data.xlsx

description: Three different sources of adverse event/adverse drug reation about the Chinese patent medicine
DOI: 10.6084/m9.figshare.10006682.v2
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.6084/m9.figshare.10006625
title: Genetic interactions derived from high-throughput phenotyping of 7,350 yeast cell cycle mutants

description: This dataset is derived from high-throughput phenotyping of over 7,000 yeast cell cycle mutants on six different media types. Multiple independent biological replicates (average of 12) were created for every possible double mutant combination of 36 cell cycle genes. Those mutants were phenotyped by measuring growth rates over time on six different media types.
DOI: 10.6084/m9.figshare.10006613
title: survey with snapshots

description: Survey with snapshots<br>
DOI: 10.6084/m9.figshare.10006610
title: The many dimensions of phytochemical diversity: linking theory to practice

description: Data from Wetzel, W.C., and S.R. Whitehead. The many dimensions of phytochemical diversity: linking theory to practice. Ecology Letters. 10.1111/ELE.13422<br>Physalis_dilution_study.csv relates toAppendix S1. Part IV. The relationship between sample concentration and detected compound richness.<br>Physalis_diversity_abundance_relationship.csv relates toAppendix S1. Part V. Exploration of diversity–abundance relationship in ​<i>Physalis angulata</i>.<br>Metadata with variable descriptions are contained inWetzel and Whitehead metadata.txt.
DOI: 10.6084/m9.figshare.10006682.v3
title: Brainstem connectome

description: This data and software can be used to analyse the complete bilateral weighted and directed brain stem connectome of the laboratory rat.<br>
DOI: 10.6084/m9.figshare.10006613.v1
title: survey with snapshots

description: Survey with snapshots<br>
DOI: 10.6084/m9.figshare.10006598
title: Sphyrna lewini 5'-COI DNA barcode sequences

description: 5'-COI DNA barcode multiple sequence alignment for scalloped hammerhead shark (Sphyrna lewini) used in Phillips et. al (submitted)