cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5683/sp3/i8mtec
title: Data from: Investigation of heterotrophs reveals new insights in dinoflagellate evolution

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;Dinoflagellates are diverse and ecologically important protists characterized by many morphological and molecular traits that set them apart from other eukaryotes. These features include, but are not limited to, massive genomes organized using bacterially-derived histone-like proteins (HLPs) and dinoflagellate viral nucleoproteins (DVNP) rather than histones, and a complex history of photobiology with many independent losses of photosynthesis, numerous cases of serial secondary and tertiary plastid gains, and the presence of horizontally acquired bacterial rhodopsins and type II RuBisCo. Elucidating how this all evolved depends on knowing the phylogenetic relationships between dinoflagellate lineages. Half of these species are heterotrophic, but existing molecular data is strongly biased toward the photosynthetic dinoflagellates due to their amenability to cultivation and prevalence in culture collections. These biases make it impossible to interpret the evolution of photosynthesis, but may also affect phylogenetic inferences that impact our understanding of character evolution. Here, we address this problem by isolating individual cells from the Salish Sea and using single cell, culture-free transcriptomics to expand molecular data for dinoflagellates to include 27 more heterotrophic taxa, resulting in a roughly balanced representation. Using these data, we performed a comprehensive search for proteins involved in chromatin packaging, plastid function, and photoactivity across all dinoflagellates. These searches reveal that 1) photosynthesis was lost at least 21 times, 2) two known types of HLP were horizontally acquired around the same time rather than sequentially as previously thought; 3) multiple rhodopsins are present across the dinoflagellates, acquired multiple times from different donors; 4) kleptoplastic species have nucleus-encoded genes for proteins targeted to their temporary plastids and they are derived from multiple lineages, and 5) warnowiids are the only heterotrophs that retain a whole photosystem, although some photosynthesis-related electron transport genes are widely retained in heterotrophs, likely as part of the iron-sulfur cluster pathway that persists in non-photosynthetic plastids.&lt;/p&gt;
description: <b>Dryad version number:</b> 7
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.x95x69prq
<b>Storage size:</b> 215031036
<b>Visibility:</b> public
DOI: 10.5683/sp3/fqjxhu
title: R code for: Following regulation, imidacloprid persists and flupyradifurone increases in non-target wildlife

description: &lt;b&gt;Abstract&lt;/b&gt;&lt;br/&gt;&lt;p&gt;After regulation of pesticides, determination of their persistence in the environment is an important indicator of effectiveness of these measures. We quantified concentrations of two types of systemic insecticides: neonicotinoids (imidacloprid, acetamiprid, clothianidin, thiacloprid, and thiamethoxam) and butenolides (flupyradifurone), in off-crop non-target media of hummingbird cloacal fluid, honey bee (&lt;em&gt;Apis mellifera&lt;/em&gt;) nectar and honey, and wildflowers before and after regulation of imidacloprid on highbush blueberries in Canada in April 2021. We found that mean total pesticide load increased in hummingbird cloacal fluid, nectar, and flower samples following imidacloprid regulation. On average, we did not find evidence of a decrease in imidacloprid concentrations after regulation. However, there were some decreases, some increases and other cases with no changes in imidacloprid levels depending on the specific media, time point of sampling and site type. At the same time, we found an overall increase in flupyradifurone, acetamiprid, thiamethoxam and thiacloprid, but no change in clothianidin concentrations. In particular, flupyradifurone concentrations observed in biota sampled near to agricultural areas increased by 2-fold in honey bee nectar, 7-fold in hummingbird cloacal fluid, and 8-fold in flowers after the 2021 imidacloprid regulation. The highest residue detected in this study was flupyradifurone at 665 ng/mL (PPB) in honey bee nectar. Mean total pesticide loads were highest in honey samples (84 ± 10 PPB) followed by nectar (56 ± 7 PPB), then hummingbird cloacal fluid (1.8 ± 0.5 PPB), and least, flowers (0.51 ± 0.06 PPB). Our results highlight that limited regulation of imidacloprid does not immediately reduce residue concentrations while other systemic insecticides, possibly replacement compounds, concurrently increase in wildlife.&lt;/p&gt;
description: <b>Dryad version number:</b> 5
<b>Version status:</b> submitted
<b>Dryad curation status:</b> Published
<b>Sharing link:</b> http://datadryad.org/stash/dataset/doi:10.5061/dryad.547d7wmfs
<b>Storage size:</b> 609464
<b>Visibility:</b> public
DOI: 10.5683/sp3/ykqjec
title: Replication Data and Code for: Home Production and Time Use in an Epidemic

description: The data and programs replicate tables and figures from "Home Production and Time Use in an Epidemic", by Xu and Feng. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/g9tzll
title: Arbuscular and ectomycorrhizal tree seedling growth is inhibited by competition

description: The experiments were conducted in southern Quebec, in the northern temperate deciduous forest bioclimatic domain. Tree seedlings (AM and ECM species) were planted on site in tubes set in the ground and i) left intact, ii) allowing hyphal access or iii) allowing roots and hyphal access from neighboring herbaceous vegetation. Seedling performance, root morphological traits and mycorrhizal colonization were compared in relation to presence of neighboring roots and/or fungal hyphae. More information on the experimental design are found in : Parasquive, V., J. Brisson, E. Laliberté, and P.-L. Chagnon. 2024. Arbuscular and ectomycorrhizal tree seedling growth is inhibited by competition from neighboring roots and associated fungal hyphae. Plant and Soil.
DOI: 10.5683/sp3/ns2rei
title: Les stratégies définies par la REDD+ peuvent t- elles promouvoir les techniques agroforestières au Cameroun?

description: Les données ci jointes répondent à la problématique des stratégies définies par la Réduction des Émissions liées à Dégradation et à la Déforestation (REDD)+ pour promouvoir les techniques agroforestières au Cameroun. Ces données qualitatives sont de sources primaires et mettent en exergue les discours des membres et collaborateurs de la REDD+ au Cameroun tout en soulignant son fonctionnement. Il s'agit d'un verbatim d'entrevue avec 28 répondants et d'un fichier SAV complémentaire qui a permis de réaliser certaines statistiques descriptives (Calcul des fréquences).
description: SPSS, 25
DOI: 10.5683/sp3/fqtuiz
title: Replication Data and Code for: The Plant-Level View of Korea’s Growth Miracle and Slowdown

description: The data and programs replicate tables and figures from "The Plant-Level View of Korea’s Growth Miracle and Slowdown" by Munseob Lee and Yongseok Shin. Please see the ReadMe file for additional details.
DOI: 10.5683/sp3/l6qka7
title: Cape Farewell Buoy

description: This file contains the surface meteorological data collected by a buoy deployed near Cape Farewell in 2004. The 10m winds were derived from the winds observed at 2.4m through a stability-dependent correction.
DOI: 10.5683/sp3/jih0cv
title: Replication Data for: Saccharomyces cerevisiae Supplementation in Canadian Finishing Feedlot Diets: Chapter 4

description: This study aims to determine the impact of tylosin, live yeast, or autolyzed yeast supplementation on steer performance, feeding behaviour, total tract digestibility, rumen pH, and carcass characteristics of steers fed high-concentrate finishing diets containing monensin.
DOI: 10.5683/sp3/m2w6ie
title: Replication Data for: Final report: G19-02 – Fairway height growth regulator trial

description: The project evaluated the effect of Anuew (Prohexadione-Calcium) as compared with the industry standard, Primo Maxx (Trinexapac-ethyl) on turfgrass growth and quality parameters on a mature bentgrass-poa annua fairway height stand of turf. Performance was assessed by how the treatments impacted turfgrass growth (clipping biomass), any stress where observed, and associated turfgrass quality measures.
description: Lyons' Lab Research Reports
description: SAS, 9.4
DOI: 10.5683/sp3/4kfawo
title: R script for analysis of DI-qTOF

description: Scripts for analysis of DI-qTOF data recorded for studies of refractory dissolved organic matter
DOI: 10.5683/sp3/3hjxcx
title: Replication Data for: Rearing laying hens: Early environmental complexity and genetic strain have life-long effects on keel bone size and fracture severity

description: This paper tested whether the degree of early environmental complexity and genetic strain affected KB development during rearing and KBF prevalence throughout lay.
DOI: 10.5683/sp3/cehucp
title: Effects of lysine and methionine on mRNA expression of candidate transcription factors by primary bovine mammary epithelial cells

description: The dataset originates from an experiment investigating the effects of lysine and methionine on mRNA expression of candidate transcription factors in primary bovine mammary epithelial cells. The objective of this study is evaluate if and when the candidate gene expression in bovine mammary epithelial cell is affected after imposing an essential amino acid deficiency in vitro, and to evaluate effects of essential amino acid deficiency on protein synthesis, endoplasmic reticulum size, cell proliferation and lipogenesis.
DOI: 10.5683/sp3/l2y27g
title: Replication Data for: Combining thinning and diverse plantings to adapt to climate-change induced timber supply shortage in British Columbia

description: This data package contains landscape level forest data, growth and yield data,
metadata and models for modelling timber supply in the Copper Pine Forest estate
within Bulkley Timber Supply Area (TSA),British Columbia, BC, Canada,
using a spatially explicit forest management planning software (Patchworks).
description: Files can be used to replicate the Patchworks simulations presented in the related publication.
description: Microsoft Access
description: Microsoft Excel
description: Patchworks
description: TIPSY
description: VDYP
description: TASS3
description: ESRI ArcGIS
DOI: 10.15468/dl.hc7vux
title: Occurrence Download

description: A dataset containing 9153 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cardiospermum grandiflorum"
 ]
}

 The dataset includes 9153 records from 349 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0046875-251025141854904/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5683/sp3/su4ol1
title: Replication Data for a machine learning approach for online automated optimization of super-resolution optical microscopy

description: Traditional approaches for finding well-performing parameterizations of complex imaging systems, such as super-resolution microscopes rely on an extensive exploration phase over the illumination and acquisition settings, prior to the imaging task. This strategy suffers from several issues: it requires a large amount of parameter configurations to be evaluated, it leads to discrepancies between well-performing parameters in the exploration phase and imaging task, and it results in a waste of time and resources given that optimization and final imaging tasks are conducted separately. Here we show that a fully automated, machine learning-based system can conduct imaging parameter optimization toward a trade-off between several objectives, simultaneously to the imaging task. Its potential is highlighted on various imaging tasks, such as live-cell and multicolor imaging and multimodal optimization. This online optimization routine can be integrated to various imaging systems to increase accessibility, optimize performance and improve overall imaging quality. All datasets used in the fully convolutional network (FCN) experiments.
description: NumPy (NPZ files)
DOI: 10.5683/sp3/4gqsbr
title: Experience-Induced Plasticity in the Attention System in Healthy Adults Practicing Musical or Non-Musical Cognitivo-Motor Activity

description: The primary objective of this study was to investigate structural brain aging within the attentional system of singers and instrumentalists. Specifically, we examined cortical aging across three groups: amateur singers, amateur instrumentalists, and non-musician active controls. Data were collected from 109 healthy adults, divided as follows: 34 amateur singers (mean age = 61.62 ± 16.19 years; age range = 23–88; 65% female), 38 amateur instrumentalists (mean age = 52.47 ± 18.82 years; age range = 20–88; 32% female), and 37 controls (mean age = 55.57 ± 18.97 years; age range = 20–87; 49% female). We are sharing the aggregated dataset used for group-level statistical analyses, enabling others to replicate our findings or explore new analyses on cortical thickness data.
DOI: 10.5683/sp3/8lts5k
title: Literature Review Vegetation in Reservoir Management

description: Published literature review data on vegetation in reservoir management. Good_Papers has data for all papers included in the published literature review.
description: Submitted for publication, not yet published.
DOI: 10.5683/sp3/2hvrov
title: Datasets for the paper "Efficient Determination of Born-Effective Charges, LO-TO Splitting, and Raman Tensors of Solids with a Real-Space Atom-Centered Deep Learning Approach""

description: This contains all the training and testing data used in the study for the paper:
"Efficient Determination of Born-Effective Charges, LO-TO Splitting, and Raman Tensors of Solids with a Real-Space Atom-Centered Deep Learning Approach"
All datasets are available in multiple formats (.h5, .db, .xyz) for training the different architectures referenced in the paper (RADNET, SchNet, SA-GPR).
DOI: 10.5683/sp3/jizxxk
title: Dataset for: Auriferous fluid evolution and the role of carbonaceous matter in a saddle-reef Au deposit: Dufferin deposit, Meguma terrane, Nova Scotia, Canada

description: Supplemental data tables containing microthermometric, Raman spectroscopic, and fluid inclusion laser ablation ICP-MS data collected in a study of the economic, metasedimentary rock-hosted Dufferin gold deposit.
description: SCIENTIFIC ABSTRACT
The metaflysch-hosted, ~380 Ma Dufferin gold deposit, Meguma terrane, northeastern Appalachian Orogen (Nova Scotia, Canada) is an orogenic gold deposit with mineralized saddle reef-type quartz veins hosted by metasandstones and black slates in a tightly folded anticline. Together with native gold inclusions, genetically-related carbonaceous material (CM) in the veins occurs as pyrobitumen lining cavities and along fractures/grain boundaries proximal to vein contacts or wallrock fragments. Integrating microanalytical methods we document the precipitation of gold through coupled fluid-fO2 reduction (via interaction with CM) and pH increase. This destabilized gold bisulfide complexes leading to efficient Au precipitation from a gold-undersaturated (0.045 ± 0.024 ppm Au; 1σ; n=58) aqueous-carbonic fluid (H2O-NaCl-CO2, N2, CH4). The proposed mineralization mechanism is supported by: (i) a decrease in Au and redox-sensitive semimetals (As, Sb), and increase in wall rock-inherited elements (i.e., Mg, K, Ca, Sr, Fe) in fluid inclusions with time; (ii) a corresponding decrease in the XCO2 consistent with CO2 removal via reduction/respeciation and late carbonate precipitation; and (iii) gold embedding in, or on, the surface of CM inside mineralized cavities and fractures. 
Despite mineralizing fluids only transporting low concentrations of Au, far from saturation, they produced Meguma-type deposits indicating that the efficiency of Au precipitation from these fluids was high, a process promoted by the presence of CM. This work re-emphasizes CM as a potential prerequisite for efficient gold precipitation within the overall genetic model for similar orogenic metasedimentary settings globally where the presence and/or role of CM has been documented.
DOI: 10.5683/sp3/vfgl0e
title: Ontario Provincial Election Survey 2018

description: This dataset is a survey of Ontario voters during the 2018 general election campaign. It includes survey questions on voter demographics, vote intention, vote history, partisanship, policy attitudes (e.g. climate change, immigration, minimum wage), personal financial situation (e.g. rental and mortgage costs, economic prospects), media consumption and social media usage.
description: R, 4.4
description: LISPOP Research Data
DOI: 10.5683/sp3/99rtpb
title: Sécurité alimentaire à Cambridge Bay - Volet Économie et approvisionnement

description: Cet ensemble de données a été produit dans le cadre du projet "Participatory Action for an Inuit-Led Research on Food Production and Nutrition in Inuit Nunangat", co-dirigé par Caroline Hervé (département d'anthropologie) et Patrice Dion (département de phytologie) de l'Université Laval. Le projet a été financé par Sentinelle Nord (Appel à projets ciblé), de 2019 à 2023. Il avait pour but d'appuyer, à travers une recherche participative, la communauté inuit de Cambridge Bay (Nunavut) dans les efforts qu’elle déploie pour mettre en place son propre système de production alimentaire locale. Le projet a été déployé en cinq volets: anthropologie de la recherche participative; anthropologie de la santé; économie et approvisionnement; agriculture et phytologie; valeur nutritionnelle. 
Le présent jeu de données concerne le volet Économie et approvisionnement. Les objectifs étaient les suivant: 
Économique : 
(1) Faire le portrait du modèle économique alimentaire des baies et légumes à Cambridge Bay ; 
(2) Documenter les attentes des citoyens de Cambridge Bay en termes de produits et de prix ;
(3) Discuter de l’impact potentiel d’une éventuelle serre sur ce modèle économique.
Approvisionnement :
(1) Comprendre le fonctionnement/les particularités de la chaîne d’approvisionnement des produits périssables dans les régions nordiques éloignées ;
(2) Identifier les enjeux caractérisant l’approvisionnement des produits périssables, plus particulièrement les fruits et légumes, par les détaillants dans les régions nordiques éloignées.
Les données ont été récoltées à l'aide de 12 entretiens semi-dirigés, d'un groupe de discussion (5 participants) et de l'observation sur le terrain. Compte tenu de la nature sensible des données, celles-ci ne peuvent pas être partagées. Par ailleurs, un article scientifique a été soumis pour publication.
DOI: 10.5683/sp3/fnmqyc
title: Sécurité alimentaire à Cambridge Bay - Volet Anthropologie de la santé

description: Cet ensemble de données a été produit dans le cadre du projet "Participatory Action for an Inuit-Led Research on Food Production and Nutrition in Inuit Nunangat", co-dirigé par Caroline Hervé (département d'anthropologie) et Patrice Dion (département de phytologie) de l'Université Laval. Le projet a été financé par Sentinelle Nord (Appel à projets ciblé), de 2019 à 2023. Il avait pour but d'appuyer, à travers une recherche participative, la communauté inuit de Cambridge Bay (Nunavut) dans les efforts qu’elle déploie pour mettre en place son propre système de production alimentaire locale. Le projet a été déployé en cinq volets: anthropologie de la recherche participative; anthropologie de la santé; économie et approvisionnement; agriculture et phytologie; valeur nutritionnelle. 
Le présent jeu de données concerne le volet Anthropologie de la santé du projet. Les objectifs étaient les suivant: 
1) Documenter la transformation des habitudes alimentaires chez les Inuit de Cambridge Bay, et notamment la place des légumes;
2) Document la place des aliments traditionnels dans l'alimentation des personnes souffrant de diabète de type 2.
3) Analyser les difficultés liées au transfert des connaissances nutritionnelles pour les personnes ayant des problèmes de santé, notamment le diabète.
Les données ont été récoltées à l'aide de 29 entretiens semi-dirigés menés à Cambridge Bay pendant les mois d'octobre 2019, de mars 2020 et de novembre 2021 Les données ne sont pas disponibles. Pour toute question, se référer au document "Accès aux données".
DOI: 10.5683/sp3/a4jg2r
title: Replication Data for: Quality of Life Assessment and Practice Support System Project
title: Quality of Life Assessments for Older Adults and Family Caregivers

description: Quantitative data for a pragmatic randomized controlled trial to test the hypothesis of whether access to a quality of life assessment and practice support system in home health care would result in improved QOL for patients and/or their family caregivers. See related publication for details.
description: The project website (https://www.healthyqol.com/older-adults) provides related resources on QOL assessments for older adults living with frailty, and their family caregivers.

Research ethics approval for the study was provided by the Trinity Western University Research Ethics Board (#15F15).
DOI: 10.5683/sp3/pgopye
title: Sécurité alimentaire à Cambridge Bay - Volet Perceptions et valeur nutritionnelle

description: Cet ensemble de données a été produit dans le cadre du projet "Participatory Action for an Inuit-Led Research on Food Production and Nutrition in Inuit Nunangat", co-dirigé par Caroline Hervé (département d'anthropologie) et Patrice Dion (département de phytologie) de l'Université Laval. Le projet a été financé par Sentinelle Nord (Appel à projets ciblé), de 2019 à 2023. Il avait pour but d'appuyer, à travers une recherche participative, la communauté inuit de Cambridge Bay (Nunavut) dans les efforts qu’elle déploie pour mettre en place son propre système de production alimentaire locale. Le projet a été déployé en cinq volets: anthropologie de la recherche participative; anthropologie de la santé; économie et approvisionnement; agriculture et phytologie; valeur nutritionnelle. 
Le présent jeu de données concerne le volet Perspectives et valeur nutritionelle. L’objectif général de ce volet était de favoriser l’intégration des légumes et fruits cultivés localement dans l’alimentation des Inuit de Cambridge Bay. Il impliquait d'explorer les perceptions des membres de la communauté de Cambridge Bay concernant la qualité nutritionnelle des légumes et fruits disponibles en épicerie, ainsi que leurs attentes quant à celle des légumes et fruits cultivés localement.
Les données ont été récoltées à l'aide de 11 entretiens (10 femmes, 1 homme) menés à Cambridge Bay au mois de juin 2022. Les participants, tous majeurs, ont été recrutés sur une base volontaire au centre communautaire local. Les données ne sont pas disponibles présentement. Pour toute question, se référer au document "Lisez-moi".
DOI: 10.5683/sp3/n050ju
title: Data for "Bias Enhanced Electrolytic Photocatalysis (BEEP) for Decomposition of Forever Chemicals in Saltwater"

description: Data for "Bias Enhanced Electrolytic Photocatalysis (BEEP) for Decomposition of Forever Chemicals in Saltwater"