cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.12749807.v1
title: Gene database of Methanobrevibacter smithii ATCC 35061

description: The predominant archaeon in the human gut, <i>Methanobrevibacter smithii</i> is a methanogen and hydrogentroph that plays a very important metabolic role in human gut homeostasis. Specifically, <i>M. smithii</i> helps digest complex polysaccharides in the human diet. But, it plays perhaps a more important role in enabling the conversion of hydrogen produced by other members of the gut microbiota into methane through reaction with carbon dioxide. This helps improve the extraction of energy in bacterial fermentations through generation of more oxidized end products. This work sought to provide foundational information of the genetic repertoire of <i>M. smithii</i> ATCC 35061 by parsing its annotated genome sequence downloaded from Genbank. Comprising gene name, gene function and gene sequence, the resource should find use in a variety of molecular cloning work seeking to exploit the biotechnological potential of the bacterium particularly with respect to hydrogentrophy. But, the dataset should also inform fundamental studies into how evolution affords the streamlined genome of <i>M. smithii</i> to encode important functions in the modern day gut microbiome.
DOI: 10.6084/m9.figshare.12749636
title: Supporting Data for publication "Controlling the outcome of SN2 reactions in ionic liquids: From rational data set design to predictive linear regression models"

description: Supporting Data for publication "Controlling the outcome of S<sub>N</sub>2 reactions in ionic liquids: From rational data set design to predictive linear regression models" by Alexandra Schindl et al.<br>The repository contains: - Full list of descriptors (xlsx file) - Linear regression and ANN model and cross-correlation results (xlsx files) - QM (EMPIRE) input, output, wave function files; structure files (xyz input, dat output) - Parasurf input and output files - Gaussian cube files of electron density, Electrostatic Potential, ionisation energy, electron affinity, electronegativity, and molecular hardness<br>
DOI: 10.6084/m9.figshare.12749636.v1
title: Supporting Data for publication "Controlling the outcome of SN2 reactions in ionic liquids: From rational data set design to predictive linear regression models"

description: Supporting Data for publication "Controlling the outcome of S<sub>N</sub>2 reactions in ionic liquids: From rational data set design to predictive linear regression models" by Alexandra Schindl et al.<br>The repository contains: - Full list of descriptors (xlsx file) - Linear regression and ANN model and cross-correlation results (xlsx files) - QM (EMPIRE) input, output, wave function files; structure files (xyz input, dat output) - Parasurf input and output files - Gaussian cube files of electron density, Electrostatic Potential, ionisation energy, electron affinity, electronegativity, and molecular hardness<br>
DOI: 10.5519/qd.ft6duvhv
title: Query on the Natural History Museum Data Portal (data.nhm.ac.uk) (18 records)
DOI: 10.6084/m9.figshare.12747038
title: Dataset_van de Walle de Ghelcke A. et al._2020_JNP.xlsx

description: This dataset supports the results of our research paper entitled "Action representation deficits in adolescents with developmental dyslexia" (Alice van de Walle de Ghelcke, Xanthi Skoura, Martin Gareth Edwards, Patrick Quercia, and Charalambos Papaxanthis), accepted for publication in Journal of Neuropsychology on 06-29-2020. Note: a "readme file" is provided with the dataset.<br>
DOI: 10.6084/m9.figshare.12746861
title: Dataset S2 KEGG annotations

description: Dataset of KEGG annotations
DOI: 10.6084/m9.figshare.12746852
title: Dataset S1 Uniprot annotations

description: Dataset of Uniprot annotations
DOI: 10.6084/m9.figshare.12746861.v1
title: Dataset S2 KEGG annotations

description: Dataset of KEGG annotations
DOI: 10.6084/m9.figshare.12746852.v1
title: Dataset S1 Uniprot annotations

description: Dataset of Uniprot annotations
DOI: 10.6084/m9.figshare.12746570
title: fluid_intelligence.20016.assoc.tsv.gz from 2017 Neale lab analysis

description: This upload includes summary statistics from analysis of the fluid intelligence phenotype from the UK Biobank from the Neale lab as part of their 20170915 release. We cite the following as a reference for this data [last accessed July 31 2020]<i>http://www.nealelab.is/blog/2017/7/19/rapid-gwas-of-thousands-of-phenotypes-for-337000-samples-in-the-uk-biobank</i><br><br><br>Specifically included here are the following two files<b>fluid_intelligence.20016.assoc.tsv.gz </b>MD5 = 685d4b5e2f35c82fe29d9d9ac6e35db4<br><b>variants.tsv.gz </b>MD5 = 1e622b87b19aa60aa18d8ac11d7b3a31<br>We also include snapshots of the websites referenced in this post as additional files<br>This data was obtained from the following linkshttps://www.dropbox.com/s/ehnp53rfqmp6xjg/variants.tsv?dl=0https://www.dropbox.com/s/shsiq0brkax886j/20016.assoc.tsv.gz?dl=0<br><br>The general website hosting the release can be viewed at [last accessed July 31 2020]http://www.nealelab.is/uk-biobank<br><br>A manifest of files released as part of the 20170915 release can be viewed at [last accessed July 31 2020]https://docs.google.com/spreadsheets/d/1b3oGI2lUt57BcuHttWaZotQcI0-mBRPyZihz87Ms_No/edit#gid=275725118<br><br>A FAQ detailing usage rights and citations can be viewed at [last accessed July 31 2020]http://www.nealelab.is/uk-biobank/faqSpecifically it includes the following notes about usage and citations. We include the appropriate citation above, and release the data here as a by-product of the usage rights stating the results may be used without restriction.<b>Usage: </b><i>Q: What is the data use policy of the GWAS results? Do I need permission to download and explore them?</i><i>A: No, they may be freely downloaded and used without restriction</i><br><b>Citation:<i> </i></b><i>Q: How do I cite these results?</i><i>A: For the round 2 results [released 1st August 2018], please cite the the page http://www.nealelab.is/uk-biobank/<br></i><i>For the round 1 results [released 20th September 2017], please cite the blogpost (http://www.nealelab.is/blog/2017/7/19/rapid-gwas-of-thousands-of-phenotypes-for-337000-samples-in-the-uk-biobank).</i><i><br></i><br><i><br></i><br>
DOI: 10.6084/m9.figshare.12746546
title: EBCD_MSFS Dataset

description: The EBCD_MSFS Dataset is used in Multi- stage feature selection (MSFS) algorithm for UWB basedearly breast cancer size prediction. 5 tumor sizes are available (2mm, 3mm, 4mm, 5mm, 6mm). 6750 data are on tumor sizes, while 750 data are from non- existence of tumor cases. Each signal sample has 1632 data points. The authors encourage further development of researchers using this dataset, provided a proper deserving acknowledgement given to this work published in Plos One journal. For further information, please contact the corresponding author. Thank you!
DOI: 10.6084/m9.figshare.12746546.v1
title: EBCD_MSFS Dataset

description: The EBCD_MSFS Dataset is used in Multi- stage feature selection (MSFS) algorithm for UWB basedearly breast cancer size prediction. 5 tumor sizes are available (2mm, 3mm, 4mm, 5mm, 6mm). 6750 data are on tumor sizes, while 750 data are from non- existence of tumor cases. Each signal sample has 1632 data points. The authors encourage further development of researchers using this dataset, provided a proper deserving acknowledgement given to this work published in Plos One journal. For further information, please contact the corresponding author. Thank you!
DOI: 10.6084/m9.figshare.12746384
title: Biogenic volatile organic compound fluxes from the forest floor, canopy, and whole ecosystem in a mixed deciduous forest in Indiana, USA

description: Biogenic volatile organic compound fluxes from the whole ecosystem, plant canopy (_c) and forest floor (_g) estimated using a hybrid Lagrangian/Eulerian canopy model in a deciduous forest in Indiana, USA. Flux units are in nmol m<sup>-2</sup> s<sup>-1</sup>. Time is the fraction of day of May, 2015.
DOI: 10.6084/m9.figshare.12746273
title: Biogenic volatile organic compound concentrations from a vertical profiling system in a mixed deciduous forest in Indiana, USA

description: Concentrations (in ppbv) of biogenic volatile organic compounds at different levels (in m) at the US-MMS Ameriflux tower in the Morgan Monroe State Forest, Indiana, USA. 'Day' refers to day of May, 2015. DMS: dimethyl sulfide, MVK: methyl vinyl ketone, MEK: methyl ethyl ketone.
DOI: 10.6084/m9.figshare.12746273.v2
title: Biogenic volatile organic compound concentrations from a vertical profiling system in a mixed deciduous forest in Indiana, USA

description: Concentrations (in ppbv) of biogenic volatile organic compounds at different levels (in m) at the US-MMS Ameriflux tower in the Morgan Monroe State Forest, Indiana, USA. 'Day' refers to day of May, 2015. DMS: dimethyl sulfide, MVK: methyl vinyl ketone, MEK: methyl ethyl ketone.
DOI: 10.6084/m9.figshare.12746273.v1
title: Biogenic volatile organic compound concentrations from a vertical profiling system in a mixed deciduous forest in Indiana, USA

description: Concentrations (in ppbv) of biogenic volatile organic compounds at different levels (in m) at the US-MMS Ameriflux tower in the Morgan Monroe State Forest, Indiana, USA. 'Day' refers to day of May, 2015. DMS: dimethyl sulfide, MVK: methyl vinyl ketone, MEK: methyl ethyl ketone.
DOI: 10.21227/kjzd-rk05
title: Vehicular Mobility Trace at Seoul, South Korea

description: The trace location in Seoul, South Korea has an area spanning over 2.5 × 1.5 km where there are are more than 30 intersections. A number of simulated vehicles are moving in the road topology. Each vehicle shows following properties for every second: timestep(simulation) secondsThe time step described by the values within this timestep-elementididThe id of the vehicletypeidThe name of the vehicle typespeedm/sThe speed of the vehicleangledegreeThe angle of the vehicle in navigational standard (0-360 degrees, going clockwise with 0 at the 12'o clock position)xm or longitudeThe absolute X coordinate of the vehicle (center of front bumper). The value depends on the given geographic projectionym or latitudeThe absolute Y coordinate of the vehicle (center of front bumper). The value depends on the given geographic projectionzmThe z value of the vehicle (center of front bumper).Note: This value is only present if the network contains elevation dataposm.The running position of the vehicle measured from the start of the current lane.laneidThe id of the current lane.slopedegreeThe slope of the vehicle in degrees (equals the slope of the road at the current position)signalsbitsetThe signal state information (blinkers, etc). Only present when option --fcd-output.signals is set.
DOI: 10.21227/b61w-1z41
title: Vehicular Mobility Trace at Seoul, South Korea

description: The trace location in Seoul, South Korea has an area spanning over 2.5 × 1.5 km where there are are more than 30 intersections. A number of simulated vehicles are moving in the road topology. Each vehicle shows following properties for every second: timestep(simulation) secondsThe time step described by the values within this timestep-elementididThe id of the vehicletypeidThe name of the vehicle typespeedm/sThe speed of the vehicleangledegreeThe angle of the vehicle in navigational standard (0-360 degrees, going clockwise with 0 at the 12'o clock position)xm or longitudeThe absolute X coordinate of the vehicle (center of front bumper). The value depends on the given geographic projectionym or latitudeThe absolute Y coordinate of the vehicle (center of front bumper). The value depends on the given geographic projectionzmThe z value of the vehicle (center of front bumper).Note: This value is only present if the network contains elevation dataposm.The running position of the vehicle measured from the start of the current lane.laneidThe id of the current lane.slopedegreeThe slope of the vehicle in degrees (equals the slope of the road at the current position)signalsbitsetThe signal state information (blinkers, etc). Only present when option --fcd-output.signals is set.
DOI: 10.6084/m9.figshare.12745679
title: COVID-19.sav

description: The data was collected via an electronic questionnaire method from 773 participants in Nigeria, selected through convenient and snowball sampling methods.
DOI: 10.6084/m9.figshare.12745679.v1
title: COVID-19.sav

description: The data was collected via an electronic questionnaire method from 773 participants in Nigeria, selected through convenient and snowball sampling methods.
DOI: 10.6084/m9.figshare.12745526
title: 20200731_Accelerationism_Mauldin.xlsx

description: Searches for "accelerationism" on Google Trends between August 2010 and August 2020.<br>
DOI: 10.6084/m9.figshare.12745526.v1
title: 20200731_Accelerationism_Mauldin.xlsx

description: Searches for "accelerationism" on Google Trends between August 2010 and August 2020.<br>
DOI: 10.6084/m9.figshare.12745394
title: Bacterial +ssRNA virus Hidden Markov Models

description: Profile Hidden Markov Models for the detection and taxonomic characterisation of bacterial +ssRNA viruses. ICTV proposed taxonomy: Leviviricetes. Last updated: 31/07/2021.
DOI: 10.6084/m9.figshare.12745370
title: Dataset S6

description: Raw velocity seismograms for SKS phases propagated through the simplified hexagonally anisotropic subduction zone model. Seismograms are in SAC format (see SAC manual; http://ds.iris.edu/files/sac-manual/). The TauP predicted SKS arrival time through IASP91 is stored for reference. SAC files are written individually for each station and component for a particular event. The filenames follow the format EVT.STN.X where 'EVT' is a unique numeric event ID (see Dataset S2), 'STN' is the station name (see Dataset S1), and 'X' is 'N', 'E', or 'Z' corresponding to the north, east, or vertical seismogram component.
DOI: 10.6084/m9.figshare.12745265
title: Dataset S5

description: Raw velocity seismograms for direct P and S phases propagated through the simplified hexagonally anisotropic subduction zone model. Seismograms are in SAC format (see SAC manual; http://ds.iris.edu/files/sac-manual/). Arrival times for P determined via waveform cross-correlation are stored in the appropriate SAC header. The TauP predicted S arrival time through IASP91 is also stored for reference. SAC files are written individually for each station and component for a particular event. The filenames follow the format EVT.STN.X where 'EVT' is a unique numeric event ID (see Dataset S2), 'STN' is the station name (see Dataset S1), and 'X' is 'N', 'E', or 'Z' corresponding to the north, east, or vertical seismogram component.
DOI: 10.6084/m9.figshare.12745265.v1
title: Dataset S5

description: Raw velocity seismograms for direct P and S phases propagated through the simplified hexagonally anisotropic subduction zone model. Seismograms are in SAC format (see SAC manual; http://ds.iris.edu/files/sac-manual/). Arrival times for P determined via waveform cross-correlation are stored in the appropriate SAC header. The TauP predicted S arrival time through IASP91 is also stored for reference. SAC files are written individually for each station and component for a particular event. The filenames follow the format EVT.STN.X where 'EVT' is a unique numeric event ID (see Dataset S2), 'STN' is the station name (see Dataset S1), and 'X' is 'N', 'E', or 'Z' corresponding to the north, east, or vertical seismogram component.
DOI: 10.6084/m9.figshare.12745229
title: Dataset S4

description: Raw velocity seismograms for direct P and S phases propagated through the isotropic subduction zone model. Seismograms are in SAC format (see SAC manual; http://ds.iris.edu/files/sac-manual/). Arrival times for P determined via waveform cross-correlation are stored in the appropriate SAC header. The TauP predicted S arrival time through IASP91 is also stored for reference. SAC files are written individually for each station and component for a particular event. The filenames follow the format EVT.STN.X where 'EVT' is a unique numeric event ID (see Dataset S2), 'STN' is the station name (see Dataset S1), and 'X' is 'N', 'E', or 'Z' corresponding to the north, east, or vertical seismogram component.
DOI: 10.6084/m9.figshare.12745214
title: High SARS-CoV-2 seroprevalence in Health Care Workers but relatively low numbers of deaths in urban Malawi

description: This data set contains demographic data and SARS-CoV-2 serology data from an asymptomatic health care worker population in Blantyre, Malawi. The data was collected between 22nd May 2020 to 19th June 2020. SARS-CoV-2 anti-Spike (S2) and anti-Nucleoprotein (NP) were detected using the Mologic/Omega Diagnostic ELISA (UK).
DOI: 10.6084/m9.figshare.12745178
title: Dataset S3

description: Simplified hexagonally anisotropic elastic model (ascii format). The density (kg/m<sup>3</sup>) and elastic coefficients (GPa) are stored at cartesian points within the modelled section of the Earth. See header in file for organization of data.
DOI: 10.6084/m9.figshare.12745169
title: Dataset S2

description: Centroid moment tensor (CMT) solution files for each event modeled (ascii format). The filenames follow the format CMTSOLUTION_ID where 'ID' is a unique number given to each event. See SPECFEM3D Cartesian manual (https://geodynamics.org/cig/software/specfem3d/) for additional information on CMT file format.
DOI: 10.6084/m9.figshare.12745151
title: Dataset S1

description: Station names and coordinates (ascii format).
DOI: 10.6084/m9.figshare.12745124
title: Dried Blood Spots are an efficient blood sampling method for the detection of SARS-CoV-2 antibodies

description: ELISA raw data readouts from Human Serum eluted from Dried Blood Spots.
DOI: 10.6084/m9.figshare.12745106
title: Mg and Zn isotope evidence for two types of mantle metasomatism and deep recycling of magnesian carbonates

description: To test the ability of Mg and Zn isotopes in discriminating between different types of mantle metasomatism and identifying deep carbon cycling, here we present a comparative study on two types of Cenozoic lavas in SE Tibet, i.e., potassic-ultrapotassic lavas and alkali basalts. The contrasting chemical compositions, Sr-Nd isotopic ratios and olivine chemistry between them suggest distinct sources in the enriched lithospheric mantle and asthenosphere, respectively. 26Mg and 66Zn values of the K-rich lavas are shifted toward slightly heavier and lighter values relative to global oceanic basalts, respectively, indicating source metasomatism by recycled siliciclastic sediments. By contrast, the alkali basalts possess remarkably light 26Mg and heavy 66Zn values that are typically characterized by marine carbonates. The coupling of high 66Zn with high Zn contents and Zn/Fe ratios further suggests a pyroxenite source containing recycled Zn-rich magnesian carbonates. This is corroborated by the similarity in major elements between the alkali basalts and experimental partial melts of CO2 + pyroxenite. Thus, Mg and Zn isotopes could be an effective tool of discriminating between silicate and carbonate metasomatism in the mantle. Notably, the occurrence of the alkali basalts is spatially consistent with a stagnant slab in the mantle transition zone (410–660 km), the latter of which is interpreted to represent the deeply subducted oceanic slab. These findings thus provide evidence for recycling of carbonates into the deep mantle, which represents a long-term circulation of subducted carbon compared with that in arc systems and has crucial significances for global deep carbon cycling.
DOI: 10.6084/m9.figshare.12745061
title: Supplementary Material for: Parkinson’s Disease-Related Motor and Nonmotor Symptoms in the Lancaster Amish

description: <b><i>Introduction:</i></b> Previous research has suggested that the Amish may experience a relatively high prevalence of Parkinson’s disease (PD) and/or parkinsonian motor signs. <b><i>Methods:</i></b> In a large sample from the Amish community in Lancaster County, Pennsylvania, age ≥18 years, we assessed the prevalence of self-reported PD diagnosis. For those without self-reported PD diagnosis, we assessed the frequency of PD-related motor symptoms using a 9-item questionnaire that was designed by the PD Epidemiology Research Group. Lastly, we queried study participants for the presence of 2 nonmotor symptoms that have been commonly linked to PD: bowel movement frequency and daytime sleepiness. <b><i>Results:</i></b> Among 2,025 subjects who answered the PD questionnaire, 430 were older than 60 years. Of 430 participants ≥60 years, 5 (1.2%) reported a PD diagnosis. Of those without a PD diagnosis, 10.5% reported ≥1 and 1.2% ≥ 4 motor symptoms for the 9-item PD screening questionnaire. Of the 3,789 subjects who answered the question about bowel movement frequency, 0.7% reported ≤3 bowel movements per week. Among 1,710 subjects who answered the question about daytime sleepiness, 8.1% of the participants reported “always” sleepy during the day. <b><i>Discussion:</i></b> These data neither support a markedly higher PD prevalence in the older Lancaster Amish nor do they show dramatically higher motor and/or selected nonmotor symptoms than the general population. Future studies that employ more rigorous procedures for case identification and PD-specific preclinical symptoms/tests are needed to determine the potential differences and similarities among different Amish populations and between Amish and non-Amish populations.
DOI: 10.6084/m9.figshare.12745106.v1
title: Mg and Zn isotope evidence for two types of mantle metasomatism and deep recycling of magnesian carbonates

description: To test the ability of Mg and Zn isotopes in discriminating between different types of mantle metasomatism and identifying deep carbon cycling, here we present a comparative study on two types of Cenozoic lavas in SE Tibet, i.e., potassic-ultrapotassic lavas and alkali basalts. The contrasting chemical compositions, Sr-Nd isotopic ratios and olivine chemistry between them suggest distinct sources in the enriched lithospheric mantle and asthenosphere, respectively. 26Mg and 66Zn values of the K-rich lavas are shifted toward slightly heavier and lighter values relative to global oceanic basalts, respectively, indicating source metasomatism by recycled siliciclastic sediments. By contrast, the alkali basalts possess remarkably light 26Mg and heavy 66Zn values that are typically characterized by marine carbonates. The coupling of high 66Zn with high Zn contents and Zn/Fe ratios further suggests a pyroxenite source containing recycled Zn-rich magnesian carbonates. This is corroborated by the similarity in major elements between the alkali basalts and experimental partial melts of CO2 + pyroxenite. Thus, Mg and Zn isotopes could be an effective tool of discriminating between silicate and carbonate metasomatism in the mantle. Notably, the occurrence of the alkali basalts is spatially consistent with a stagnant slab in the mantle transition zone (410–660 km), the latter of which is interpreted to represent the deeply subducted oceanic slab. These findings thus provide evidence for recycling of carbonates into the deep mantle, which represents a long-term circulation of subducted carbon compared with that in arc systems and has crucial significances for global deep carbon cycling.
DOI: 10.6084/m9.figshare.12745124.v2
title: Dried Blood Spots are an efficient blood sampling method for the detection of SARS-CoV-2 antibodies

description: ELISA raw data readouts from Human Serum eluted from Dried Blood Spots.