cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.7294/21230690.v1
title: 3D Metadata Schema

description: Supplemental materials for Web3D paper - Levels of Representation and Data Infrastructures in Entomo-3D: An applied research approach to addressing metadata curation issues to support preservation and access of 3D. <br> One 3D metadata schema and three dataset pipeline figures
DOI: 10.21954/ou.rd.21494022
title: Covid Chronicles: The Magical Dust of Hope

description: This poem was written by Moth. This is a pen name. It is used because the moth symbolises transformation, knowledge, wisdom, vulnerability and determination. Moths are connected to the moon, to the feminine spirit and energies. Moth wrote this poem as a tribute to Swansea Asylum-Seeker Support (SASS) as an expression of her appreciation for the kindness and support she has received from the volunteers of this charity. Moth came to the UK in search of safety. In the short time that she has lived in Swansea, she has already made a substantial contribution to local life through her volunteering activities. She has both received and given support to others through her engagement with SASS. Moth is a very talented and compassionate poet and writer. Her writing goes from strength to strength. One day she hopes to publish a collection of her poetry. We are very grateful to you Moth for granting us permission to publish your poem which helps us show what solidarity looks like, feels like and acts like. <br> <em>This contribution is part of the </em><em>Covid Chronicles from the Margins</em><em> project, based atThe Open University. It is a living growing archive co-produced with refugees, asylum seekers, undocumented migrants and others with precarious migration status. It offers a digital platform where migrants document, share and debate the impact of the pandemic and its aftermath on their lives using diverse cultural and arts forms.</em>
DOI: 10.21954/ou.rd.21494022.v1
title: Covid Chronicles: The Magical Dust of Hope

description: This poem was written by Moth. This is a pen name. It is used because the moth symbolises transformation, knowledge, wisdom, vulnerability and determination. Moths are connected to the moon, to the feminine spirit and energies. Moth wrote this poem as a tribute to Swansea Asylum-Seeker Support (SASS) as an expression of her appreciation for the kindness and support she has received from the volunteers of this charity. Moth came to the UK in search of safety. In the short time that she has lived in Swansea, she has already made a substantial contribution to local life through her volunteering activities. She has both received and given support to others through her engagement with SASS. Moth is a very talented and compassionate poet and writer. Her writing goes from strength to strength. One day she hopes to publish a collection of her poetry. We are very grateful to you Moth for granting us permission to publish your poem which helps us show what solidarity looks like, feels like and acts like. <br> <em>This contribution is part of the </em><em>Covid Chronicles from the Margins</em><em> project, based atThe Open University. It is a living growing archive co-produced with refugees, asylum seekers, undocumented migrants and others with precarious migration status. It offers a digital platform where migrants document, share and debate the impact of the pandemic and its aftermath on their lives using diverse cultural and arts forms.</em>
DOI: 10.6084/m9.figshare.21501549
title: Sample data files for Python Course

description: Sample data set used in an introductory course on Programming in Python
DOI: 10.6084/m9.figshare.21501568.v1
title: Silurian to Cretaceous geologic evolution of southern Mexico and its connection to the assembly and breakup of western equatorial Pangea: geochronological constraints from the northern Sierra de Juárez Complex

description: S1: U–Pb data and S2: trace elements data
DOI: 10.6084/m9.figshare.21501568
title: Silurian to Cretaceous geologic evolution of southern Mexico and its connection to the assembly and breakup of western equatorial Pangea: geochronological constraints from the northern Sierra de Juárez Complex

description: S1: U–Pb data and S2: trace elements data
DOI: 10.5281/zenodo.7286886
title: Evaluating Datalog Tools for Meta-reasoning over OWL 2 QL

description: There has been increasing interest in enriching ontologies with meta-modeling and meta-querying for the past few years. Unfortunately, the Direct Semantics for OWL2 and SPARQL does not support meta-constructs in a satisfactory way: While meta-axioms (involving identifiers used both as a class and an individual) can be syntactically expressed using punning, different occurrences of the same identifier will be treated as different entities. For example, GoldenEagle used as an instance of EndangeredSpecies and also as a class containing individuals, will be treated as two separate, unrelated entities. Meta-queries (for example, asking for classes that also occur as individuals) are not allowed at all in SPARQL under the Direct Semantics Entailment Regime. To overcome this, a new semantic flavour for SPARQL, called Meta-modeling Semantics Entailment Regime (MSER), has been introduced. In previous work, Cima et al. have proposed a reduction from OWL 2 QL (a light-weight profile of OWL 2) and associated meta-queries in SPARQL to query answering over Datalog rules. In this paper, we experiment with various logic programming tools that support Datalog querying to determine their suitability as back-ends to MSER query answering. These tools stem from different logic programming paradigms (Prolog, pure Datalog, Answer Set Programming). Our work shows that the Datalog approach to MSER querying is practical also for sizeable ontologies.
DOI: 10.5281/zenodo.7286885
title: Evaluating Datalog Tools for Meta-reasoning over OWL 2 QL

description: There has been increasing interest in enriching ontologies with meta-modeling and meta-querying for the past few years. Unfortunately, the Direct Semantics for OWL2 and SPARQL does not support meta-constructs in a satisfactory way: While meta-axioms (involving identifiers used both as a class and an individual) can be syntactically expressed using punning, different occurrences of the same identifier will be treated as different entities. For example, GoldenEagle used as an instance of EndangeredSpecies and also as a class containing individuals, will be treated as two separate, unrelated entities. Meta-queries (for example, asking for classes that also occur as individuals) are not allowed at all in SPARQL under the Direct Semantics Entailment Regime. To overcome this, a new semantic flavour for SPARQL, called Meta-modeling Semantics Entailment Regime (MSER), has been introduced. In previous work, Cima et al. have proposed a reduction from OWL 2 QL (a light-weight profile of OWL 2) and associated meta-queries in SPARQL to query answering over Datalog rules. In this paper, we experiment with various logic programming tools that support Datalog querying to determine their suitability as back-ends to MSER query answering. These tools stem from different logic programming paradigms (Prolog, pure Datalog, Answer Set Programming). Our work shows that the Datalog approach to MSER querying is practical also for sizeable ontologies.
DOI: 10.3886/e171481v1-130400
title: Impact of the COVID-19 pandemic on psychological distress and biological rhythm in China’s general population ：A cross-sectional dataset

description: This folder contains the data and all necessary files to replicate all results from the article “ Impact of the COVID-19 pandemic on psychological distress and biological rhythm in China’s general population: A path analysis model” <br><br>
description: not applicable<br>
description: Response Rates: A total of 3,246 respondents registered in our questionnaire. In the end, 9 were excluded because they were below 12 years (n=8) or did not live in China’s mainland (n=1) <br>
description: Presence of Common Scales: <b>Social Support Rating Scale (SSRS):</b> SSRS was used for the measurement of social support. <b><br></b><b>Biological Rhythm Interview of Assessment in Neuropsychiatry (BRIAN):</b> BRIAN was applied to assess the degree of biological rhythm dysregulation. <br> <b><br></b><b>Brief Symptom Inventory-18 (BSI-18):</b> BSI-18 is a self-report symptoms checklist which is commonly used to evaluate psychological distress of respondents in the past one week.<br><br>The exact items were listed in uploaded file “Corresponding Questionnaires in Research”. Please check it for details.<br><br><br>
description: A cross-sectional online survey was conducted via Chinese social applications (APPs) WeChat and Weibo, the Chinese equivalent of Twitter, in China’s mainland.<br>
description: Participants would be excluded if they were under 12 years old or not living in China’s mainland.<br>. Smallest Geographic Unit: China
description: web-based survey; not applicable<br>
DOI: 10.20387/bonares-9ne9-a828
title: Long-term field trial on tillage in crop rotation - Westerfeld

description: The long-term field trial started 1992 in Bernburg, Saxony Anhalt, Germany (51°82' N, 11°70', 138 m above sea level). The soil is a loess chernozem over limestone with an effective rooting depth of 100 cm, containing 22% clay, 70% silt and 8% sand in the ploughed upper (Ap) horizon. It has a neutral pH (7.0-7.4) and an appropriate P and K supply (45-70 mg kg-1 and 130-185 mg kg-1 in calcium-acetate-lactate extract, respectively). The 1980 - 2010 annual average temperature was 9.7°C, the average annual precipitation 511 mm. On five large parcels in strip split plot design (1.2 ha each, main plots) the individual crops - grain maize (Zea mays) - winter wheat (Triticum aestivum) - winter barley (Hordeum vulgare) - winter rapeseed (Brassica napus ssp. napus) - winter wheat - are rotated. All crop residues remain on the fields. Conservation tillage cultivator (CT, 10 cm flat non-inversion soil loosening) is compared to sub-plots with conventional tillage (MP; mould-board plough, carrier board with combined alternating ploughshares, ploughing depth 30 cm, incl. soil inversion). The differentially managed soils are either intensively (Int) operated according to usual practice regarding N supply and pesticide application or extensively managed (Ext; reduced N supply, without fungicides and growth regulators).
DOI: 10.5281/zenodo.7287593
title: Raw data for Ultimate speed of the supercurrent and its pairing mechanism

description: All raw data for the paper entitled "Ultimate speed of the supercurrent and its pairing mechanism" are deposited here. Data are available under the terms of the Creative Commons Attribution 4.0 International license (CC BY 4.0). Addition of the author as a responsible author and/or an inventor in any publication, including electronic publications, is prohibited.
DOI: 10.5281/zenodo.7287592
title: Raw data for Ultimate speed of the supercurrent and its pairing mechanism

description: All raw data for the paper entitled "Ultimate speed of the supercurrent and its pairing mechanism" are deposited here. Data are available under the terms of the Creative Commons Attribution 4.0 International license (CC BY 4.0). Addition of the author as a responsible author and/or an inventor in any publication, including electronic publications, is prohibited.
DOI: 10.34740/kaggle/dsv/4448089
title: YouTube Trending Video Dataset (updated daily)
DOI: 10.34740/kaggle/dsv/4448108
title: 2021 World Population (updated daily)
DOI: 10.6084/m9.figshare.21378780.v3
title: replication.zip

description: Replication package for the Intent Study.
DOI: 10.5281/zenodo.5572839
title: GRCh38 Reference FASTA (bgzip'd with faidx)

description: This is derived from ftp://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/000/001/405/GCA_000001405.15_GRCh38/seqs_for_alignment_pipelines.ucsc_ids/GCA_000001405.15_GRCh38_no_alt_analysis_set.fna.gz. It has been recompressed with bgzip and indexed with samtools. This tar file contains: reference.fasta.bgz reference.fasta.bgz.fai reference.fasta.bgz.gzi
DOI: 10.5281/zenodo.6640691
title: GRCh38.p14 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.fna.gz. It has been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.40_GRCh38.p14/GCF_000001405.40_GRCh38.p14_genomic.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz cat genomic.fna | sed -r 's/^&gt;(NC_0+([0-9]+)\.*)/&gt;chr\2 \1/g' &gt; chrfix.fna bgzip -c chrfix.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.5572838
title: GRCh38.p13 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GRCh38_major_release_seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_plus_hs38d1_analysis_set.fna.gz. All non-primary sequences have been removed. It has then been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GRCh38_major_release_seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_plus_hs38d1_analysis_set.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz awk '{ if ((NR&gt;1)&&($0~/^&gt;/)) { printf("\n%s", $0); } else if (NR==1) { printf("%s", $0); } else { printf("\t%s", $0); } }' genomic.fna | grep -v "^&gt;chr\S*_" - | tr "\t" "\n" &gt; genomic.short.fna bgzip -c genomic.short.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.6804231
title: GRCh38.p13 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz. It has been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz cat genomic.fna | sed -r 's/^&gt;(NC_0+([0-9]+)\.*)/&gt;chr\2 \1/g' &gt; chrfix.fna bgzip -c chrfix.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.7251599
title: GRCh38.p13 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz. A short name (chr1, chr2, ... chr22, chrX, chrY, chrM) has been added to each primary chromosomal sequence. It has then been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz cat genomic.fna | sed -r 's/^&gt;(NC.*Homo sapiens chromosome ([0-9XY]+),.*)/&gt;chr\2 \1/g' | sed -r 's/^&gt;(NC.*Homo sapiens mitochondrion,.*)/&gt;chrM \1/g' &gt; chrfix.fna bgzip -c chrfix.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.7255850
title: GRCh38.p13 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz. A short name (chr1, chr2, ... chr22, chrX, chrY, chrM) has been added to each primary chromosomal sequence. All other sequences have been removed. It has then been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GCF_000001405.39_GRCh38.p13_genomic.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz cat genomic.fna | sed -r 's/^&gt;(NC.*Homo sapiens chromosome ([0-9XY]+),.*)/&gt;chr\2 \1/g' | sed -r 's/^&gt;(NC.*Homo sapiens mitochondrion,.*)/&gt;chrM \1/g' &gt; chrfix.fna awk '{ if ((NR&gt;1)&&($0~/^&gt;/)) { printf("\n%s", $0); } else if (NR==1) { printf("%s", $0); } else { printf("\t%s", $0); } }' chrfix.fna | grep "&gt;chr" - | tr "\t" "\n" &gt; chrfix.short.fna bgzip -c chrfix.short.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.7288118
title: GRCh38.p13 Reference FASTA (bgzip'd with faidx)

description: This is derived from https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GRCh38_major_release_seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_plus_hs38d1_analysis_set.fna.gz. All non-primary sequences have been removed. It has then been recompressed with bgzip and indexed with samtools: <pre><code class="language-bash">curl -#fSL https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/001/405/GCF_000001405.39_GRCh38.p13/GRCh38_major_release_seqs_for_alignment_pipelines/GCA_000001405.15_GRCh38_full_plus_hs38d1_analysis_set.fna.gz -o genomic.fna.gz gunzip genomic.fna.gz awk '{ if ((NR&gt;1)&&($0~/^&gt;/)) { printf("\n%s", $0); } else if (NR==1) { printf("%s", $0); } else { printf("\t%s", $0); } }' genomic.fna | grep -v "^&gt;chr\S*_" - | tr "\t" "\n" &gt; genomic.short.fna bgzip -c genomic.short.fna &gt; reference.fna.bgz samtools faidx reference.fna.bgz tar -czvf GRCh38_reference_fasta.tar reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi </code></pre> This tar file contains: reference.fna.bgz reference.fna.bgz.fai reference.fna.bgz.gzi
DOI: 10.5281/zenodo.6527086
title: Threatening factor and threatened levels of the 14888 Chinese angiosperms.

description: This data is part of the article '<em>Extention risk of Chinese angiosperms varieties between wood and herb specifications</em>' (doi: 10.1111/ddi.13655). The dataset includes the threatened levels of 14888 Chinese angiosperms and the environmental factors, traits and evolution data affecting their extinction risk. All continuous factors were standardized and centralized. Abbreviations: AP: Annual precipitation; MAT: Mean annual temperature; HFP: Human footprint index; NDVI: Normalized difference vegetation index; TC: Temperature change; PC: Precipitation change.
DOI: 10.5281/zenodo.6527087
title: Threatening factor and threatened levels of the 14888 Chinese angiosperms.

description: This data is part of the article '<em>Extention risk of Chinese angiosperms varieties between wood and herb specifications</em>' (doi: 10.1111/ddi.13655). The dataset includes the threatened levels of 14888 Chinese angiosperms and the environmental factors, traits and evolution data affecting their extinction risk. All continuous factors were standardized and centralized. Abbreviations: AP: Annual precipitation; MAT: Mean annual temperature; HFP: Human footprint index; NDVI: Normalized difference vegetation index; TC: Temperature change; PC: Precipitation change.
DOI: 10.5281/zenodo.7288063
title: Disintegration of PBAT/PLA blown films modified with chain extending cross-linkers

description: A biodegradable blend of PBAT – poly(butylene adipate-co-terephthalate) and PLA – poly(lactic acid) for blown film extrusion was modified with four multi-functional chain extending cross-linkers (CECL). The anisotropic morphology introduced during film blowing affects the degradation processes. As two CECL cause chain scission and the other two cross-linking, their compost (bio-)disintegration behavior was significantly altered with respect to the unmodified reference blend. The disintegration behavior at 30 and 60 °C was investigated by determining mass changes, Young’s moduli, tensile strengths, elongations at break and thermal properties. In order to quantify the disintegration behavior, the hole areas of blown films were evaluated after compost storage at 60 °C to calculate the kinetics of time dependent degrees of disintegration. The kinetic model of disintegration provides two parameters: initiation time and disintegration time. They quantify the effects of the CECL on the disintegration behavior of the PBAT/PLA compound. DSC revealed pronounced annealing effect after storage in compost at 30 °C, and the occurrence of the additional step-like increase of the heat flow at 75 °C after storage at 60 °C. The disintegration consists of processes which affect amorphous and crystalline phase of PBAT in different manner that cannot be understood by a hydrolytic chain degradation only.
DOI: 10.5281/zenodo.7288062
title: Disintegration of PBAT/PLA blown films modified with chain extending cross-linkers

description: A biodegradable blend of PBAT – poly(butylene adipate-co-terephthalate) and PLA – poly(lactic acid) for blown film extrusion was modified with four multi-functional chain extending cross-linkers (CECL). The anisotropic morphology introduced during film blowing affects the degradation processes. As two CECL cause chain scission and the other two cross-linking, their compost (bio-)disintegration behavior was significantly altered with respect to the unmodified reference blend. The disintegration behavior at 30 and 60 °C was investigated by determining mass changes, Young’s moduli, tensile strengths, elongations at break and thermal properties. In order to quantify the disintegration behavior, the hole areas of blown films were evaluated after compost storage at 60 °C to calculate the kinetics of time dependent degrees of disintegration. The kinetic model of disintegration provides two parameters: initiation time and disintegration time. They quantify the effects of the CECL on the disintegration behavior of the PBAT/PLA compound. DSC revealed pronounced annealing effect after storage in compost at 30 °C, and the occurrence of the additional step-like increase of the heat flow at 75 °C after storage at 60 °C. The disintegration consists of processes which affect amorphous and crystalline phase of PBAT in different manner that cannot be understood by a hydrolytic chain degradation only.
DOI: 10.5517/cc9v8ft
title: CCDC 293366: Experimental Crystal Structure Determination

description: Related Article: A.Amani, G.Rezanejade Bardajee, G.Samavati, R.Mansouri|2005|Z.Kristallogr.-New Cryst.Struct.|220|453|
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.25773/55p3-mx91
title: GIS Data: Charles County, Maryland Shoreline Situation Report
DOI: 10.6084/m9.figshare.21499071.v5
title: Example datasets for singleCellHaystack GitHub vignettes (2022)

description: Example single-cell and spatial transcriptomics/genomics datasets for use in the vignettes of SinglCellHaystack on GitHub. These are for the updated, continuous version of singleCellHaystack, made publis in 2022.
DOI: 10.25773/rp1t-nt93
title: GIS Data: Somerset County, Maryland Shoreline Situation Report
DOI: 10.25773/762f-9k87
title: GIS Data: St. Mary’s County, Maryland Shoreline Situation Report