cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11531130
title: MOESM1 of A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

description: Additional file 1: Table S1. Differentially expressed or regulated events between male and female Daphnia pulex. Results are in separate tabs; A) Differentially expressed transcripts, B) Differentially expressed genes, C) Differentially expressed splice variants, D) Differentially methylated CpGs, E) Differentially modified histone H3 trimethylated at lysine 4 (H3K4me3), F) Differentially modified histone H3 trimethylated at lysine 27 (H3K27me3).
DOI: 10.6084/m9.figshare.11531130.v1
title: MOESM1 of A comprehensive epigenomic analysis of phenotypically distinguishable, genetically identical female and male Daphnia pulex

description: Additional file 1: Table S1. Differentially expressed or regulated events between male and female Daphnia pulex. Results are in separate tabs; A) Differentially expressed transcripts, B) Differentially expressed genes, C) Differentially expressed splice variants, D) Differentially methylated CpGs, E) Differentially modified histone H3 trimethylated at lysine 4 (H3K4me3), F) Differentially modified histone H3 trimethylated at lysine 27 (H3K27me3).
DOI: 10.6084/m9.figshare.11531100
title: MOESM1 of Experience gained from the implementation of the Saudi TraumA Registry (STAR)

description: Additional file 1. STAR Minimum Dataset. Full listing of dictionary data domain; dictionary reference; variable name and dictionary definition
DOI: 10.6084/m9.figshare.11531100.v1
title: MOESM1 of Experience gained from the implementation of the Saudi TraumA Registry (STAR)

description: Additional file 1. STAR Minimum Dataset. Full listing of dictionary data domain; dictionary reference; variable name and dictionary definition
DOI: 10.6084/m9.figshare.11531082
title: MOESM5 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 5. Manually curated set of L1 s with uniquely mapped non-strand-specific reads in 22Rv1 stranded in whole cell RNA-seq data from replicate 1. L1 s curated to be authentically expressed were labeled with a green color and L1 s curated to be rejected as passively expressed were labeled with a red color and its reason for rejection or acceptance was noted in the most right column following the guidelines for manual curation. In purple are examples of L1 s with antisense promoter activity. As the orientation of reads can not be distinguished in non-stranded data these L1 loci were curated to be not expressed off their own promoter and represent false negative calls. In blue are L1 loci that were curated to be authentically expressed in non-stranded data, but in fact had antisense reads mapped to it. These were considered false positive calls.
DOI: 10.6084/m9.figshare.11531082.v1
title: MOESM5 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 5. Manually curated set of L1 s with uniquely mapped non-strand-specific reads in 22Rv1 stranded in whole cell RNA-seq data from replicate 1. L1 s curated to be authentically expressed were labeled with a green color and L1 s curated to be rejected as passively expressed were labeled with a red color and its reason for rejection or acceptance was noted in the most right column following the guidelines for manual curation. In purple are examples of L1 s with antisense promoter activity. As the orientation of reads can not be distinguished in non-stranded data these L1 loci were curated to be not expressed off their own promoter and represent false negative calls. In blue are L1 loci that were curated to be authentically expressed in non-stranded data, but in fact had antisense reads mapped to it. These were considered false positive calls.
DOI: 10.6084/m9.figshare.11531076
title: MOESM4 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 4. The number of uniquely mapped upstream reads up to 1000 and 5000 bps upstream aligned with the manually curated, strand-specific, whole-cell, RNA-Seq data from replicate 1. In the first column are the L1 locus ID numbers, in the second column are the number of sense reads that map uniquely to the specific L1, in the third column is the reason for acceptance or rejection as authentically expressed L1 s, in the fourth column are the number of sense reads uniquely mapping up to 1000 bps upstream the specific L1, and in the fifth column are the number of sense reads uniquely mapping up to 5000 bps upstream the specific L1. In green are the L1 s curated to be expressed off their own promoters. In red are the L1 s curated to be passively transcribed off a promoter unrelated to the L1.
DOI: 10.6084/m9.figshare.11531076.v1
title: MOESM4 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 4. The number of uniquely mapped upstream reads up to 1000 and 5000 bps upstream aligned with the manually curated, strand-specific, whole-cell, RNA-Seq data from replicate 1. In the first column are the L1 locus ID numbers, in the second column are the number of sense reads that map uniquely to the specific L1, in the third column is the reason for acceptance or rejection as authentically expressed L1 s, in the fourth column are the number of sense reads uniquely mapping up to 1000 bps upstream the specific L1, and in the fifth column are the number of sense reads uniquely mapping up to 5000 bps upstream the specific L1. In green are the L1 s curated to be expressed off their own promoters. In red are the L1 s curated to be passively transcribed off a promoter unrelated to the L1.
DOI: 10.6084/m9.figshare.11531070
title: MOESM3 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 3. Exon:Intron ratio calculations: A) whole-cell RNA-Seq data from replicate 1, B) cytoplasmic RNA-Seq data from replicate 1, C) whole-cell RNA-Seq data from replicate 2, D) cytoplasmic RNA-Seq data from replicate 2, and E) nuclear RNA-Seq data from replicate 2. The number of mapped reads from the RNA-Seq sample of interest to the exons and introns of different housekeeping genes like B2M, GAPDH, GUSB, HPRT, PGK1, TK1 are in column J. The sum of exon reads and intron reads for each gene are in column N. The ratio of exon:intron calculations are in column O. The average of these ratios per Seq sample are found in column O, row 98.
DOI: 10.6084/m9.figshare.11531064
title: MOESM2 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 2. FPKM values for manually curated true L1 expression.
DOI: 10.6084/m9.figshare.11531070.v1
title: MOESM3 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 3. Exon:Intron ratio calculations: A) whole-cell RNA-Seq data from replicate 1, B) cytoplasmic RNA-Seq data from replicate 1, C) whole-cell RNA-Seq data from replicate 2, D) cytoplasmic RNA-Seq data from replicate 2, and E) nuclear RNA-Seq data from replicate 2. The number of mapped reads from the RNA-Seq sample of interest to the exons and introns of different housekeeping genes like B2M, GAPDH, GUSB, HPRT, PGK1, TK1 are in column J. The sum of exon reads and intron reads for each gene are in column N. The ratio of exon:intron calculations are in column O. The average of these ratios per Seq sample are found in column O, row 98.
DOI: 10.6084/m9.figshare.11531064.v1
title: MOESM2 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 2. FPKM values for manually curated true L1 expression.
DOI: 10.6084/m9.figshare.11531058
title: MOESM1 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 1. Manually curated set of L1 s with uniquely mapped sense reads in stramd-specific 22Rv1 A) whole cell RNA-Seq data from replicate 1, B) cytoplasmic RNA-Seq data from replicate 1, C) whole cell RNA-Seq data from replicate 2, D) cytoplasmic RNA-Seq data from replicate 2, and E) nuclear RNA-Seq data from replicate 2. L1 s curated to be authentically expressed were labeled with a green color and L1 s curated to be rejected as authentically expressed were labeled with a red color and its reason for rejection or acceptance was noted in the most right column.
DOI: 10.6084/m9.figshare.11531058.v1
title: MOESM1 of Comparative analysis on the expression of L1 loci using various RNA-Seq preparations

description: Additional file 1. Manually curated set of L1 s with uniquely mapped sense reads in stramd-specific 22Rv1 A) whole cell RNA-Seq data from replicate 1, B) cytoplasmic RNA-Seq data from replicate 1, C) whole cell RNA-Seq data from replicate 2, D) cytoplasmic RNA-Seq data from replicate 2, and E) nuclear RNA-Seq data from replicate 2. L1 s curated to be authentically expressed were labeled with a green color and L1 s curated to be rejected as authentically expressed were labeled with a red color and its reason for rejection or acceptance was noted in the most right column.
DOI: 10.6084/m9.figshare.11530953
title: MOESM1 of Ras isoforms: signaling specificities in CD40 pathway

description: Additional file 1. Figure S1. (A) Densitometry for immunoblot analysis for the silencing of Ras isoforms H, K, and N-Ras using specific siRNA. (B-D) Densitometry for immunoblots for phosphorylation of p38MAPK and ERK1/2 in P388D1 cells silenced for H (B), K (C), and N-Ras (D). Figure S2. (A) Densitometric analysis of the activation of H-Ras, K-Ras, and N-Ras on the silencing of Ras GEFs (Sos-1/2, Vav, and Ras-GRP) using GEF specific siRNA. (B) Densitometry of immunoblot analysis of phosphorylation of p38MAPK and ERK1/2 on silencing of Ras GEFs Sos-1/2, Vav and Ras-GRP. Figure S3. (A) Densitometric quantifications of the blots in Figure 5A. (B)Densitometric analyses of immunoblots of activated Ras isoforms in the lysates of untransfected or Syk or Lyn specific siRNA transfected, anti-CD40 antibody (3μg/ml) treated P388D1 cells, normalized to corresponding controls. (C) Densitometric analyses of immunoblots of translocated Sos-1/2 (Tr-Sos-1/2), translocated Ras-GRP (Tr-RasGRP), syk and lyn in the lysates of untreated or Syk siRNA or Lyn siRNA or anti-CD40 antibody (3μg/ml) treated P388D1 cells, normalized to corresponding controls. (D) Densitometric analyses of immunoblots of translocated Sos-1/2 (Tr-Sos-1/2), translocated Ras-GRP (Tr-Ras-GRP), phospho-lyn (p-lyn) and phospho-syk (p-syk) in the lysates of untreated or Syk inhibitor (Syk Inh, 3μM; Calbiochem, San Diego, CA) or PP-1 (340nM; BIOMOL International, PA) treated or anti-CD40 antibody (3μg/ml) treated macrophages, normalized to corresponding controls. (E) Co-immunoprecipitation of H-Ras, K-Ras and N-Ras at different doses of anti-CD40 to check for its association with Lyn, Syk and CD40. Figure S4. (A)Densitometry for effect of silencing of H-Ras, K-Ras, and N-Ras on the phosphorylation of PI3K and Raf. Text 1. Sequence and Structure Similarity Among Ras isoforms. Table S1. Sequence and structure similarity among Ras isoforms. Text 2. Comparative studies on symmetry of residue-residue interaction preferences, across Ras isoform structures. Table S2. Quantifying the symmetry in Residue-Residue interaction in three Ras isoforms.
DOI: 10.6084/m9.figshare.11530953.v1
title: MOESM1 of Ras isoforms: signaling specificities in CD40 pathway

description: Additional file 1. Figure S1. (A) Densitometry for immunoblot analysis for the silencing of Ras isoforms H, K, and N-Ras using specific siRNA. (B-D) Densitometry for immunoblots for phosphorylation of p38MAPK and ERK1/2 in P388D1 cells silenced for H (B), K (C), and N-Ras (D). Figure S2. (A) Densitometric analysis of the activation of H-Ras, K-Ras, and N-Ras on the silencing of Ras GEFs (Sos-1/2, Vav, and Ras-GRP) using GEF specific siRNA. (B) Densitometry of immunoblot analysis of phosphorylation of p38MAPK and ERK1/2 on silencing of Ras GEFs Sos-1/2, Vav and Ras-GRP. Figure S3. (A) Densitometric quantifications of the blots in Figure 5A. (B)Densitometric analyses of immunoblots of activated Ras isoforms in the lysates of untransfected or Syk or Lyn specific siRNA transfected, anti-CD40 antibody (3μg/ml) treated P388D1 cells, normalized to corresponding controls. (C) Densitometric analyses of immunoblots of translocated Sos-1/2 (Tr-Sos-1/2), translocated Ras-GRP (Tr-RasGRP), syk and lyn in the lysates of untreated or Syk siRNA or Lyn siRNA or anti-CD40 antibody (3μg/ml) treated P388D1 cells, normalized to corresponding controls. (D) Densitometric analyses of immunoblots of translocated Sos-1/2 (Tr-Sos-1/2), translocated Ras-GRP (Tr-Ras-GRP), phospho-lyn (p-lyn) and phospho-syk (p-syk) in the lysates of untreated or Syk inhibitor (Syk Inh, 3μM; Calbiochem, San Diego, CA) or PP-1 (340nM; BIOMOL International, PA) treated or anti-CD40 antibody (3μg/ml) treated macrophages, normalized to corresponding controls. (E) Co-immunoprecipitation of H-Ras, K-Ras and N-Ras at different doses of anti-CD40 to check for its association with Lyn, Syk and CD40. Figure S4. (A)Densitometry for effect of silencing of H-Ras, K-Ras, and N-Ras on the phosphorylation of PI3K and Raf. Text 1. Sequence and Structure Similarity Among Ras isoforms. Table S1. Sequence and structure similarity among Ras isoforms. Text 2. Comparative studies on symmetry of residue-residue interaction preferences, across Ras isoform structures. Table S2. Quantifying the symmetry in Residue-Residue interaction in three Ras isoforms.
DOI: 10.6084/m9.figshare.11530938
title: MOESM3 of Genetic diversity of a widespread annual killifish from coastal Tanzania

description: Additional file 3: Additional table supplementing results. Table S3. Pairwise FST estimates based on 10 microsatellite loci
DOI: 10.6084/m9.figshare.11530938.v1
title: MOESM3 of Genetic diversity of a widespread annual killifish from coastal Tanzania

description: Additional file 3: Additional table supplementing results. Table S3. Pairwise FST estimates based on 10 microsatellite loci
DOI: 10.6084/m9.figshare.11530890
title: MOESM1 of Systems biology approaches toward autosomal dominant polycystic kidney disease (ADPKD)

description: Additional file 1.
DOI: 10.6084/m9.figshare.11530890.v1
title: MOESM1 of Systems biology approaches toward autosomal dominant polycystic kidney disease (ADPKD)

description: Additional file 1.
DOI: 10.6084/m9.figshare.11530869
title: MOESM1 of A novel IFNα-induced long noncoding RNA negatively regulates immunosuppression by interrupting H3K27 acetylation in head and neck squamous cell carcinoma

description: Additional file 1: Table S1. Primers and oligonucleotide sequences used for qPCR, siRNA, RACE, ChIP and RIP assays.
DOI: 10.6084/m9.figshare.11530869.v1
title: MOESM1 of A novel IFNα-induced long noncoding RNA negatively regulates immunosuppression by interrupting H3K27 acetylation in head and neck squamous cell carcinoma

description: Additional file 1: Table S1. Primers and oligonucleotide sequences used for qPCR, siRNA, RACE, ChIP and RIP assays.
DOI: 10.6084/m9.figshare.11530797
title: MOESM1 of Genetic diversity and population structure of black cottonwood (Populus deltoides) revealed using simple sequence repeat markers

description: Additional file 1: Table S1. Information for the SSR primers. Table S2. The detection of null allele loci using SSR primers based on two analyses software. Table S3. The genetic diversity parameters of 15 SSR primers in P. deltoids resources. Table S4. Genetic diversities of the six populations of P. deltoides resources. Table S5. Composition of the members of two groups according to Q-value matrix (K = 2). Table S6. Material Information for P. deltoides germplasm resources. Table S7. Genetic information of polymorphic loci.
DOI: 10.6084/m9.figshare.11530797.v1
title: MOESM1 of Genetic diversity and population structure of black cottonwood (Populus deltoides) revealed using simple sequence repeat markers

description: Additional file 1: Table S1. Information for the SSR primers. Table S2. The detection of null allele loci using SSR primers based on two analyses software. Table S3. The genetic diversity parameters of 15 SSR primers in P. deltoids resources. Table S4. Genetic diversities of the six populations of P. deltoides resources. Table S5. Composition of the members of two groups according to Q-value matrix (K = 2). Table S6. Material Information for P. deltoides germplasm resources. Table S7. Genetic information of polymorphic loci.
DOI: 10.6084/m9.figshare.11530785.v1
title: supp2_tables_evaluation of lncRNA identification tools.xlsx

description: Supplementary tables S1-S12
DOI: 10.6084/m9.figshare.11530776
title: Appendix 1-4: Geochemical variation of Miocene basalts within Shikoku Basin: magma source compositions and geodynamic implications

description: Appendix 1 Major element (wt%) compositions of feldspars for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 2 Major element (wt%) compositions of pyroxenes for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 3 The detailed calculation results of the clinopyroxene crystallization temperature for volcanic rocks from the Shikoku Basin, Japan Sea, and Parece Vela Basin. Appendix 4 The detailed calculation results of the batch partial melting model.
DOI: 10.6084/m9.figshare.11530776.v1
title: Appendix 1-4: Geochemical variation of Miocene basalts within Shikoku Basin: magma source compositions and geodynamic implications

description: Appendix 1 Major element (wt%) compositions of feldspars for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 2 Major element (wt%) compositions of pyroxenes for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 3 The detailed calculation results of the clinopyroxene crystallization temperature for volcanic rocks from the Shikoku Basin, Japan Sea, and Parece Vela Basin. Appendix 4 The detailed calculation results of the batch partial melting model.
DOI: 10.6084/m9.figshare.11530749
title: Geochemical variation of Miocene basalts within Shikoku Basin: magma source compositions and geodynamic implications

description: Appendix 1 Major element (wt%) compositions of feldspars for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 2 Major element (wt%) compositions of pyroxenes for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 3 The detailed calculation results of the clinopyroxene crystallization temperature for volcanic rocks from the Shikoku Basin, Japan Sea, and Parece Vela Basin. Appendix 4 The detailed calculation results of the batch partial melting model.<br>
DOI: 10.6084/m9.figshare.11530749.v1
title: Geochemical variation of Miocene basalts within Shikoku Basin: magma source compositions and geodynamic implications

description: Appendix 1 Major element (wt%) compositions of feldspars for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 2 Major element (wt%) compositions of pyroxenes for volcanic rocks from Site C0012 and Site 1173 in the Shikoku Basin.Appendix 3 The detailed calculation results of the clinopyroxene crystallization temperature for volcanic rocks from the Shikoku Basin, Japan Sea, and Parece Vela Basin. Appendix 4 The detailed calculation results of the batch partial melting model.<br>
DOI: 10.6084/m9.figshare.11530647
title: Diviner off-nadir campaign

description: LRO Diviner data in high and low emission angles from the off-nadir campaign of the spacecraft.<br>diviner_high_emission.txt and diviner_low_emis. txt are the Diviner brightness temperatures collected from a high observation angle and a low observation angle. This is the raw data which we used to prepare Figure 9, as described in the manuscript.<br>R_1_ppd.txt and R_05_ppd.txt are the R maps published in Figure 9, derived from the data in diviner_high_emission.txt and diviner_low_emis.txt.<br>R_lat_data.txt and R_lon_data.txt are the coordinates used to create the maps shown in Figure 9 using the data in R_1_ppd.txt and R_05_ppd.txt.<br>Fiigure_8_c_e.txt and Fiigure_8_d_f.txt are panels c,e and d,f of Figure 8<br>Fiigure_1_a.txt and Fiigure_1_b.txt are panels a and b of Figure 1<br>
DOI: 10.6084/m9.figshare.11530647.v1
title: Diviner off-nadir campaign

description: LRO Diviner data in high and low emission angles from the off-nadir campaign of the spacecraft.
DOI: 10.6084/m9.figshare.11530647.v2
title: Diviner off-nadir campaign

description: LRO Diviner data in high and low emission angles from the off-nadir campaign of the spacecraft.<br>diviner_high_emission.txt and diviner_low_emis. txt are the Diviner brightness temperatures collected from a high observation angle and a low observation angle. This is the raw data which we used to prepare Figure 9, as described in the manuscript.<br>R_1_ppd.txt and R_05_ppd.txt are the R maps published in Figure 9, derived from the data in diviner_high_emission.txt and diviner_low_emis.txt.<br>R_lat_data.txt and R_lon_data.txt are the coordinates used to create the maps shown in Figure 9 using the data in R_1_ppd.txt and R_05_ppd.txt.
DOI: 10.6084/m9.figshare.11530647.v4
title: Diviner off-nadir campaign

description: LRO Diviner data in high and low emission angles from the off-nadir campaign of the spacecraft.<br>diviner_high_emission.txt and diviner_low_emis. txt are the Diviner brightness temperatures collected from a high observation angle and a low observation angle. This is the raw data which we used to prepare Figure 9, as described in the manuscript.<br>R_1_ppd.txt and R_05_ppd.txt are the R maps published in Figure 9, derived from the data in diviner_high_emission.txt and diviner_low_emis.txt.<br>R_lat_data.txt and R_lon_data.txt are the coordinates used to create the maps shown in Figure 9 using the data in R_1_ppd.txt and R_05_ppd.txt.<br>Fiigure_8_c_e.txt and Fiigure_8_d_f.txt are panels c,e and d,f of Figure 8<br>Fiigure_1_a.txt and Fiigure_1_b.txt are panels a and b of Figure 1<br>
DOI: 10.6084/m9.figshare.11530647.v3
title: Diviner off-nadir campaign

description: LRO Diviner data in high and low emission angles from the off-nadir campaign of the spacecraft.<br>diviner_high_emission.txt and diviner_low_emis. txt are the Diviner brightness temperatures collected from a high observation angle and a low observation angle. This is the raw data which we used to prepare Figure 9, as described in the manuscript.<br>R_1_ppd.txt and R_05_ppd.txt are the R maps published in Figure 9, derived from the data in diviner_high_emission.txt and diviner_low_emis.txt.<br>R_lat_data.txt and R_lon_data.txt are the coordinates used to create the maps shown in Figure 9 using the data in R_1_ppd.txt and R_05_ppd.txt.
DOI: 10.6084/m9.figshare.11528253
title: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families

description: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families
DOI: 10.6084/m9.figshare.11528253.v2
title: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families

description: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families
DOI: 10.6084/m9.figshare.11528253.v1
title: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families

description: Estudios que identifican cambios significativos antes y después de la implementación de los programas Triple P, Incredible Years, Programa Guía y Strengthening Families