cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.8006201.v1
title: Supplementary Material for: Neurosurgeons’ Armamentarium for the Management of Refractory Postherpetic Neuralgia: A Systematic Literature Review

description: <b><i>Background/Aims:</i></b> Postherpetic neuralgia (PHN) can be refractory to both medical and minimally invasive treatments. Its complex pathophysiology explains the numerous neurosurgical procedures that have been implemented through the years. Our objective was to summarize all available neurosurgical strategies for the management of resistant PHN and evaluate their respective safety and efficacy outcomes. <b><i>Methods:</i></b> A comprehensive systematic review was conducted according to the Preferred Reporting Items for Systematic Reviews and Meta-Analyses (PRISMA) guidelines. <b><i>Results:</i></b> A total of 38 studies comprising 811 patients with refractory PHN were included. The safety and efficacy of the following procedures were investigated: spinal cord stimulation (SCS), dorsal root entry zone (DREZ) lesioning, intrathecal drug delivery, caudalis DREZ lesioning, dorsal root ganglion (DRG) radiofrequency lesioning, peripheral nerve stimulation, gamma knife surgery, deep brain stimulation, cordotomy, percutaneous radiofrequency rhizotomy and Gasserian ganglion stimulation. <b><i>Conclusions:</i></b> There are several available neurosurgical approaches for recalcitrant PHN including neuromodulatory and ablative procedures. It is suggested that patients with resistant PHN undergo minimally invasive procedures first, including SCS, peripheral nerve stimulation or DRG radiofrequency lesioning. More invasive procedures should be reserved for refractory cases. Comparative studies are needed in order to construct a PHN neurosurgical management algorithm.
DOI: 10.6084/m9.figshare.8006189
title: Solanum sisymbrifolium

description: Pollen from Brazilian Savannah (Cerrado), Mato Grosso do Sul state. The images were used for training and test software based on computer vision and machine learning.
DOI: 10.6084/m9.figshare.8006189.v1
title: Solanum sisymbrifolium

description: Pollen from Brazilian Savannah (Cerrado), Mato Grosso do Sul state. The images were used for training and test software based on computer vision and machine learning.
DOI: 10.6084/m9.figshare.8006198.v1
title: Cistrome-GO bedfiles

description: Peak bed files for tools comparison.
DOI: 10.6084/m9.figshare.8006198.v2
title: Cistrome-GO bedfiles

description: Peak bed files for tools comparison.
DOI: 10.6084/m9.figshare.8005868
title: Supplementary Material for: Comparison of Place-versus-Pitch Mismatch between a Perimodiolar and Lateral Wall Cochlear Implant Electrode Array in Patients with Single-Sided Deafness and a Cochlear Implant

description: <b><i>Background:</i></b> In electric-acoustic pitch matching experiments in patients with single-sided deafness and a cochlear implant, the observed “mismatch” between perceived pitch and predicted pitch, based on the amended Greenwood frequency map, ranges from –1 to –2 octaves. It is unknown if and how this mismatch differs for perimodiolar versus lateral wall electrode arrays. <b><i>Objectives:</i></b> We aimed to investigate if the type of electrode array design is of influence on the electric-acoustic pitch match. <b><i>Method:</i></b> Fourteen patients (<i>n</i> = 8 with CI422 + lateral wall electrode array, <i>n</i> = 6 with CI512 + perimodiolar electrode array; Cochlear Ltd.) compared the pitch of acoustic stimuli to the pitch of electric stimuli at two test sessions (average interval 4.3 months). We plotted these “pitch matches” per electrode contact against insertion angle, calculated from high-resolution computed tomography scans. The difference between these pitch matches and two references (the spiral ganglion map and the default frequency allocation by Cochlear Ltd.) was defined as “mismatch.” <b><i>Results:</i></b> We found average mismatches of –2.2 octaves for the CI422 group and –1.3 octaves for the CI512 group. For any given electrode contact, the mismatch was smaller for the CI512 electrode array than for the CI422 electrode array. For all electrode contacts together, there was a significant difference between the mismatches of the two groups (<i>p</i> &lt; 0.05). Results remained stable over time, with no significant difference between the two test sessions considering all electrode contacts. Neither group showed a significant correlation between the mismatch and phoneme recognition scores. <b><i>Conclusion:</i></b> The pitch mismatch was smaller for the perimodiolar electrode array than for the lateral wall electrode array.
DOI: 10.6084/m9.figshare.8005868.v1
title: Supplementary Material for: Comparison of Place-versus-Pitch Mismatch between a Perimodiolar and Lateral Wall Cochlear Implant Electrode Array in Patients with Single-Sided Deafness and a Cochlear Implant

description: <b><i>Background:</i></b> In electric-acoustic pitch matching experiments in patients with single-sided deafness and a cochlear implant, the observed “mismatch” between perceived pitch and predicted pitch, based on the amended Greenwood frequency map, ranges from –1 to –2 octaves. It is unknown if and how this mismatch differs for perimodiolar versus lateral wall electrode arrays. <b><i>Objectives:</i></b> We aimed to investigate if the type of electrode array design is of influence on the electric-acoustic pitch match. <b><i>Method:</i></b> Fourteen patients (<i>n</i> = 8 with CI422 + lateral wall electrode array, <i>n</i> = 6 with CI512 + perimodiolar electrode array; Cochlear Ltd.) compared the pitch of acoustic stimuli to the pitch of electric stimuli at two test sessions (average interval 4.3 months). We plotted these “pitch matches” per electrode contact against insertion angle, calculated from high-resolution computed tomography scans. The difference between these pitch matches and two references (the spiral ganglion map and the default frequency allocation by Cochlear Ltd.) was defined as “mismatch.” <b><i>Results:</i></b> We found average mismatches of –2.2 octaves for the CI422 group and –1.3 octaves for the CI512 group. For any given electrode contact, the mismatch was smaller for the CI512 electrode array than for the CI422 electrode array. For all electrode contacts together, there was a significant difference between the mismatches of the two groups (<i>p</i> &lt; 0.05). Results remained stable over time, with no significant difference between the two test sessions considering all electrode contacts. Neither group showed a significant correlation between the mismatch and phoneme recognition scores. <b><i>Conclusion:</i></b> The pitch mismatch was smaller for the perimodiolar electrode array than for the lateral wall electrode array.
DOI: 10.6084/m9.figshare.8005703
title: Alpha diversity of vascular plants in European forests

description: Večeřa et al. (2019). Alpha diversity of vascular plants in European forests. Journal of Biogeography.<br><br>Content: <br>Shapefiles with modelled alpha-diversity values (Alpha_diversity_patterns.rar), identified richness hotspots (Richness_hotspots.rar), and maps of prediction uncertainty (Alpha_diversity_prediction_uncertainty.rar).
DOI: 10.6084/m9.figshare.8005703.v2
title: Alpha diversity of vascular plants in European forests

description: Večeřa et al. (2019). Alpha diversity of vascular plants in European forests. Journal of Biogeography.<br><br>Content: <br>Shapefiles with modelled alpha-diversity values (Alpha_diversity_patterns.rar), identified richness hotspots (Richness_hotspots.rar), and maps of prediction uncertainty (Alpha_diversity_prediction_uncertainty.rar).
DOI: 10.6084/m9.figshare.8005703.v1
title: Alpha diversity of vascular plants in European forests

description: Večeřa et al. (2019). Alpha diversity of vascular plants in European forests. Journal of Biogeography.<br><br>Content: <br>Shapefiles with the modelled alpha-diversity values (Alpha_diversity_patterns.rar), the identified richness hotspots (Richness_hotspots.rar), and maps of prediction uncertainty (Alpha_diversity_prediction_uncertainty.rar).
DOI: 10.6084/m9.figshare.8005661
title: Hierarchical nanoflake-assembled flower-like NiCo double hydroxide@NiC<sub>2</sub>O<sub>4</sub> microspheres for high-performance supercapacitor

description: Assembly of NiCo double hydroxide@NiC<sub>2</sub>O<sub>4</sub> porous microspheres on Ni foam was fabricated by the direct anodisation of nickel foam (NF) and the subsequent electrodeposition of NiCo double hydroxide (NiCo-DH). The obtained Ni foam-supported NiCo-DH@NiC<sub>2</sub>O<sub>4</sub> (NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF) was used as the binder-free electrode for electrochemical capacitor (EC). The combination of NiC<sub>2</sub>O<sub>4</sub> and NiCo-DH increases the amount of active sites for redox reactions while the hierarchical porous morphology significantly enhances the diffusion of electrolyte. With Ni foam as 3D conductive substrate and current collector, the electronic conductivity of the electrode material was significantly improved and the diffusion of the electrolyte on the electrode surface was effectively enhanced. NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF demonstrates a high areal capacity, a good cycling stability and a good rate capability . In addition, a hybrid supercapacitor (HSC) assembled with NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF as the positive electrode and activated carbon (AC) as the negative electrode exhibited good performance with high energy density and power density.
DOI: 10.6084/m9.figshare.8005661.v1
title: Hierarchical nanoflake-assembled flower-like NiCo double hydroxide@NiC<sub>2</sub>O<sub>4</sub> microspheres for high-performance supercapacitor

description: Assembly of NiCo double hydroxide@NiC<sub>2</sub>O<sub>4</sub> porous microspheres on Ni foam was fabricated by the direct anodisation of nickel foam (NF) and the subsequent electrodeposition of NiCo double hydroxide (NiCo-DH). The obtained Ni foam-supported NiCo-DH@NiC<sub>2</sub>O<sub>4</sub> (NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF) was used as the binder-free electrode for electrochemical capacitor (EC). The combination of NiC<sub>2</sub>O<sub>4</sub> and NiCo-DH increases the amount of active sites for redox reactions while the hierarchical porous morphology significantly enhances the diffusion of electrolyte. With Ni foam as 3D conductive substrate and current collector, the electronic conductivity of the electrode material was significantly improved and the diffusion of the electrolyte on the electrode surface was effectively enhanced. NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF demonstrates a high areal capacity, a good cycling stability and a good rate capability . In addition, a hybrid supercapacitor (HSC) assembled with NiCo-DH@NiC<sub>2</sub>O<sub>4</sub>/NF as the positive electrode and activated carbon (AC) as the negative electrode exhibited good performance with high energy density and power density.
DOI: 10.6084/m9.figshare.8005607
title: Increasing use of immunotherapy and prolonged survival among younger patients with primary CNS lymphoma: a population-based study

description: <b>Background:</b> Primary CNS lymphoma is a highly aggressive and rare type of extranodal non-Hodgkin lymphoma. Although, new therapeutic approaches have led to improved survival, the management of the disease poses a challenge, practice patterns vary across institutions and countries, and remain ill-defined for vulnerable patient subgroups. <b>Material and Methods:</b> Using information from the Austrian Brain Tumor Registry we followed a population-based cohort of 189 patients newly diagnosed from 2005 to 2010 through various lines of treatment until death or last follow-up (12-31-2016). Prognostic factors and treatment-related data were integrated in a comprehensive survival analysis including conditional survival estimates. <b>Results:</b> We find variable patterns of first-line treatment with increasing use of rituximab and high-dose methotrexate (HDMTX)-based poly-chemotherapy after 2007, paralleled by an increase in median overall survival restricted to patients aged below 70 years. In the entire cohort, 5-year overall survival was 24.4% while 5-year conditional survival increased with every year postdiagnosis. <b>Conclusion:</b> In conclusion, we show that the use of poly-chemotherapy and immunotherapy has disseminated to community practice to a fair extent and survival has increased over time at least in younger patients. Annually increasing conditional survival rates provide clinicians with an adequate and encouraging prognostic measure.
DOI: 10.6084/m9.figshare.8005601
title: Bibliometrics analysis of Schlumberger publications: 2015-2019 years

description: <b>The aim of this research:</b>Scientometric investigation of publication activity of Schlumberger during 2015-2019 years. Schlumberger is the most active service company working in Russia.Academician researchers have to pay attention to scientific interests of Schlumberger<b>Bibliographic Resources:</b> Web of Science Core Collection; Scopus; OnePetro<b>Main queries:</b>(from Web of Science Core Collection)You searched for: ORGANIZATION-ENHANCED: (schlumberger)Timespan: 2015-2019. Indexes: SCI-EXPANDED, ESCI. Results: 806AFFILORG ( schlumberger ) AND PUBYEAR &gt; 20143,961 document resultsConference Papers (2,984)File for workflow description:Schlumberger-2015-2019.pdf<b>Main tools:</b>VOSviewer - a software tool for constructing and visualizing bibliometric networks - http://www.vosviewer.com/Typora — a markdown editor - https://typora.io/Notepad++ - a free source code editor - https://notepad-plus-plus.org/SmoothCSV - a powerful CSV file editor - https://smoothcsv.com/2/The <b>Next To-Do</b> List:design the bibliometrics investigation protocol for more systematic reports with better captions for pictures and tables.<b>Some interesting results </b>of bibliometrics analysis of Schlumberger publications:- infill drilling, geophysical prospecting, seismic prospecting - new attention to old topics determined by development of unconventional resources<br>- Schlumberger, Russian Federation have 47 documents, but low total link strength -190 (China -2093; Saudi Aramco - 1927). Common problem: low international collaboration of Russian organizations- Articles are more concerned with topic "MODELS" then conference papersThe question for further investigations: what algorithms are most using inside reservoir evaluation topic?<br>
DOI: 10.6084/m9.figshare.8005607.v1
title: Increasing use of immunotherapy and prolonged survival among younger patients with primary CNS lymphoma: a population-based study

description: <b>Background:</b> Primary CNS lymphoma is a highly aggressive and rare type of extranodal non-Hodgkin lymphoma. Although, new therapeutic approaches have led to improved survival, the management of the disease poses a challenge, practice patterns vary across institutions and countries, and remain ill-defined for vulnerable patient subgroups. <b>Material and Methods:</b> Using information from the Austrian Brain Tumor Registry we followed a population-based cohort of 189 patients newly diagnosed from 2005 to 2010 through various lines of treatment until death or last follow-up (12-31-2016). Prognostic factors and treatment-related data were integrated in a comprehensive survival analysis including conditional survival estimates. <b>Results:</b> We find variable patterns of first-line treatment with increasing use of rituximab and high-dose methotrexate (HDMTX)-based poly-chemotherapy after 2007, paralleled by an increase in median overall survival restricted to patients aged below 70 years. In the entire cohort, 5-year overall survival was 24.4% while 5-year conditional survival increased with every year postdiagnosis. <b>Conclusion:</b> In conclusion, we show that the use of poly-chemotherapy and immunotherapy has disseminated to community practice to a fair extent and survival has increased over time at least in younger patients. Annually increasing conditional survival rates provide clinicians with an adequate and encouraging prognostic measure.
DOI: 10.6084/m9.figshare.8003963
title: Understanding and Mitigating Bee Drownings in Open Feeders

description: Understanding and Mitigating Bee Drownings in Open Feeders
DOI: 10.6084/m9.figshare.8003945
title: Pancrustacean evolution illuminated by taxon-rich genomic-scale data sets with an expanded remipede sampling

description: Amino acid matrices, Orthogroups and Phylogenetic Trees<br><br>We provide the concatenated alignments in fasta format of Matrix A and B (untrimmed and trimmed) with a nexus file with the gene partitions. We also provide in fasta format those orthogroups predicted by OMA standalone software that were present at least in 50% of the considered transcriptomes. Gene trees are included in nexus format.<br>
DOI: 10.6084/m9.figshare.8003963.v1
title: Understanding and Mitigating Bee Drownings in Open Feeders

description: Understanding and Mitigating Bee Drownings in Open Feeders
DOI: 10.6084/m9.figshare.8003909
title: SCDP_row.data.zip

description: The submission contains SNP data in plink formats. The data is fully described in the manuscript: "<b>The SYNBREED chicken diversity panel: A global resource to assess chicken diversity at high genomic resolution" which is submitted to the BMC Genomics journal</b>
DOI: 10.6084/m9.figshare.8003915
title: Supplementary Material for: Clinical Experience of Immunotherapy Treatment: Efficacy and Toxicity Analysis of the Compassionate Use Program of Nivolumab in Patients with Advanced Squamous Cell Non-Small Cell Lung Cancer

description: <b><i>Background:</i></b> Anti-PD1 monoclonal antibody nivolumab is an approved therapy option for the treatment of advanced squamous cell non-small cell lung cancer (SQ-NSCLC) patients. Data outside clinical trials about therapy efficacy and safety in later therapy line treatments have rarely been described until now. <b><i>Methods:</i></b> We performed a retrospective data analysis of patients who were enrolled into the nivolu­mab Compassionate Use Program (CUP) in Germany. Sufficient clinical data of 40 patients were available for efficacy and safety analysis. <b><i>Results:</i></b> Overall, 47.5% of all treated patients were not affected by any adverse events (AEs); 17.5% of patients suffered from severe AEs. The 1-year survival rate was 61.3%. Estimated median progression-free survival (PFS) was 5.3 months. Patients who received nivolumab as third or later therapy line treatment (77.5%) achieved similar median PFS and 12-month overall survival rate of 52%. <b><i>Conclusion:</i></b> Our findings of immunotherapy treatment outside clinical trials support the results of studies in the past and confirm the efficacy and favorable toxicity profile of nivolumab treatment in advanced SQ-NSCLC patients. In addition, we can present some rarely described information about nivolumab treatment of heavily pretreated patients, which provides some evidence that immunotherapy could also be useful in later therapy lines.
DOI: 10.6084/m9.figshare.8003885
title: Supplementary Material for: Electrical Stimulation Directs Migration, Enhances and Orients Cell Division and Upregulates the Chemokine Receptors CXCR4 and CXCR2 in Endothelial Cells

description: Natural direct current electric fields (DC EFs) within tissues undergoing angiogenesis have the potential to influence vessel formation, but how they affect endothelial cells is not clear. We therefore quantified behaviours of human umbilical vein endothelial cells (HUVEC) and human microvasculature endothelial cells (HMEC) stimulated by EFs<i></i>in vitro. Both cell types migrated faster and toward the cathode; HUVECs responded to fields as low as 50mV/mm, but the HMEC threshold was 100 mV/mm. Mitosis was stimulated at 50 mV/mm for HMEC and at 150 mV/mm for HUVECs, but the cleavage plane was oriented orthogonal to the field vector at 200 mV/mm for both cell types. That different field strengths induced different cell responses suggests distinct underlying cellular mechanisms. A physiological electric field also upregulated expression of CXCR4 and CXCR2 chemokine receptors and upregulated phosphorylation of both chemokines in HUVEC and HMEC cells. Evidence that DC EFs direct endothelial cell migration, proliferation and upregulate chemokines involved in wound healing suggests a key role for electrical control of capillary production during healing. Our data contribute to the molecular mechanisms by which DC EFs direct endothelial cell behaviour and present a novel signalling paradigm in wound healing, tissue regeneration and angiogenesis-related diseases.
DOI: 10.6084/m9.figshare.8003882
title: Bayesian and ML phylogenetic trees

description: Bayesian and ML phylogenetic trees
DOI: 10.6084/m9.figshare.8003819
title: Raw MAKER GFF3 annotation file

description: GFF3 annotation file with the raw MAKER output, with added putative protein functions and PFAM domains.
DOI: 10.6084/m9.figshare.8003882.v1
title: Bayesian and ML phylogenetic trees

description: Bayesian and ML phylogenetic trees
DOI: 10.6084/m9.figshare.8003801
title: Uilhoorn_EGU_Trait-based modelling of evergreen and deciduous trees

description: Mechanistic models can quantify trade-offs in trait expression in deciduous and evergreen trees, and increase our understanding of plant functioning.
DOI: 10.6084/m9.figshare.8003819.v1
title: Raw MAKER GFF3 annotation file

description: GFF3 annotation file with the raw MAKER output, with added putative protein functions and PFAM domains.
DOI: 10.6084/m9.figshare.8003783
title: EGU_Khadka_20190408.pdfRoads and Landslides

description: This is my EGU abstract and PICO presentation on "Roads, landslides, and local social-ecological resilience in Far Western Nepal".
DOI: 10.6084/m9.figshare.8003789
title: The Aerial Elephant Dataset: A new public benchmark for aerial object detection.

description: p, li { white-space: pre-wrap; } <pre>The dataset consists of 2101 images containing a total of 15 511 elephants. It is split into training and test subsets with 1649 images containing 12455 elephants in the training set and 452 images containing 3056 elephants in the test set. The resolution of the images varies between 2.4 cm/pixel and 13 cm/pixel, but the nominal resolution for each image is specified in the accompanying metadata, so it is a simple matter to resample images to a consistent GSD. Because acquired images often overlap, the same individuals may sometimes be seen in 2 or 3 consecutive images. Care has been taken with the train/test split to ensure that such clusters of related images are not split, thus maintaining independence of the training and test sets. </pre> <pre><br></pre> <pre>These images were acquired over the course of 8 separate campaigns in different environments.</pre><pre><br></pre>
DOI: 10.6084/m9.figshare.8003777
title: Mango Transcriptome Assembly

description: This mango transcriptome assembly was derived from pooled leaf, stem, bud, root, floral and fruit tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 82198 of mango unigenes were generated and functionally annotated using a combination of <i>de novo</i> transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.
DOI: 10.6084/m9.figshare.8003762
title: Avocado Transcriptome Assembly

description: Avocado transcriptome assembly from pooled leaf, stem, bud, root, floral and fruit tissue. Using normalized cDNA libraries, we generated comprehensive RNA-Seq datasets using the Illumina NextSeq 500 platform. 63420 of avocado unigenes respectively were generated and functionally annotated using a combination of de novo transcriptome assembly, redundancy reduction and Basic Local Alignment Search Tool (BLAST) searches to the Universal Protein Resource UniProtKB/Swiss-Prot database.