cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.5281/zenodo.15333222
title: Summary Statistics of eQTL analysis from a Japan clear cell renal cell carcinoma (ccRCC) cohort (n=100)

description: This repository details the summary statistics files generated by FastQTL (https://github.com/broadinstitute/gtex-pipeline/tree/master/qtl) for a Japan clear cell renal cell carcinoma (ccRCC) cohort (n=100), using tumor WES and paired RNA-Seq data. 

1) eQTL-ccRCC-final.allpairs.txt.gz

All tested cis gene-variant pairs from the nominal association test, reporting unadjusted p-values (pval_nominal), effect sizes (slope), and standard errors (slope_se).

2) eQTL-ccRCC-final.genes.txt.gz

For each tested gene, the most significant cis-eQTL variant (lead eQTL), identified from the permutation-based association test (--permute 1000 10000), reporting adjusted p-values (pval_beta), effect sizes (slope), and standard errors (slope_se).





qval: False discovery rate (FDR) q-value estimated across all tested genes using the qvalue method. Genes with qval < 0.05 are considered significant eGenes at 5% FDR.



3) eQTL-ccRCC-final.genes.annotated.txt.gz

The same as (2), with additional gene annotation columns:





gene_name (HGNC symbol)




gene_chr (chromosome)




gene_start (start position)




gene_end (end position)




strand (+ or -)
DOI: 10.5281/zenodo.15333223
title: Summary Statistics of eQTL analysis from a Japan clear cell renal cell carcinoma (ccRCC) cohort (n=100)

description: This repository details the summary statistics files generated by FastQTL (https://github.com/broadinstitute/gtex-pipeline/tree/master/qtl) for a Japan clear cell renal cell carcinoma (ccRCC) cohort (n=100), using tumor WES and paired RNA-Seq data. 

1) eQTL-ccRCC-final.allpairs.txt.gz

All tested cis gene-variant pairs from the nominal association test, reporting unadjusted p-values (pval_nominal), effect sizes (slope), and standard errors (slope_se).

2) eQTL-ccRCC-final.genes.txt.gz

For each tested gene, the most significant cis-eQTL variant (lead eQTL), identified from the permutation-based association test (--permute 1000 10000), reporting adjusted p-values (pval_beta), effect sizes (slope), and standard errors (slope_se).





qval: False discovery rate (FDR) q-value estimated across all tested genes using the qvalue method. Genes with qval < 0.05 are considered significant eGenes at 5% FDR.



3) eQTL-ccRCC-final.genes.annotated.txt.gz

The same as (2), with additional gene annotation columns:





gene_name (HGNC symbol)




gene_chr (chromosome)




gene_start (start position)




gene_end (end position)




strand (+ or -)
DOI: 10.48544/e9fb4c24-476d-4660-a32e-9b31eb721286
title: Multilevel modeling for social scientists
DOI: 10.34740/kaggle/dsv/8850508
title: Forex Exchange Rates Since 2004 (Updated Daily)
DOI: 10.15468/dl.cgk7dk
title: Occurrence Download

description: A dataset listing the 98 species recorded in GBIF matching the query:
{
 "DatasetKey" : [
 "is Diversity and composition of island insects of the Bejaia region (Algeria)"
 ]
}

 The dataset's 98 records were derived from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010053-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.9v5ghp
title: Occurrence Download

description: A dataset containing 4375 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Nectandra membranacea (Sw.) Griseb., Nectandra laevis Mez, Nectandra leucothyrsus Meisn., Nectandra bondarii Coe-Teix., Nectandra cuspidata var. macrocarpa Nees, Nectandra cuspidata var. strumosa (Griseb.) Meisn., Laurus membranacea Sw., Oreodaphne strumosa Griseb.)"
 ]
}

 The dataset includes 4375 records from 247 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010076-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.q3gwck
title: Occurrence Download

description: A dataset containing 628 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Lippia turbinata Griseb."
 ]
}

 The dataset includes 628 records from 58 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010081-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eku33p
title: Occurrence Download

description: A dataset containing 940 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Country is China",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "TaxonKey is Haliaeetus albicilla (Linnaeus, 1758)"
 ]
}

 The dataset includes 940 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010080-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.aj3a4h
title: Occurrence Download

description: A dataset containing 75537 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "HasCoordinate is true",
 "TaxonKey is one of (Faxonius rusticus (Girard, 1852), Faxonius virilis (Hagen, 1870), Procambarus clarkii (Girard, 1852), Lithobates catesbiana (Shaw, 1802))"
 ]
}

 The dataset includes 75537 records from 512 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010079-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.2swgsr
title: Occurrence Download

description: A dataset containing 129437 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Ursidae"
 ]
}

 The dataset includes 129437 records from 553 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010055-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.a8eddp
title: Occurrence Download

description: A dataset containing 9371 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Phorcus lineatus (da Costa, 1778)"
 ]
}

 The dataset includes 9371 records from 149 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010083-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26148823
title: 537 draft genomes from Kust, et al. 2024

description: <b>Description:</b> This dataset comprises 537 draft genomes of bacterial species associated with cyanobacterial consortia from three distinct freshwater ecosystems. These consortia were established using five model cyanobacterial strains and bacterial inocula from Strawberry Creek, Eel River and Discovery Bay, CA. The genomes were derived from metagenomic sequencing and subsequent genome-resolved metagenomic analysis, representing a wide array of bacterial taxa. The dataset provides insights into the taxonomic diversity, genomic novelty, and community structure of these<i> in vitro</i> consortia. This resource is invaluable for studying microbial interactions, community dynamics, and the ecological roles of cyanobacteria-associated bacteria.<b>Key Highlights:</b><b>Sample Collection:</b> Bacterial inocula were collected from three freshwater ecosystems: UC Berkeley Strawberry Creek, Eel River, CA, and Sacramento River Delta, CA.<b>Cyanobacterial Hosts:</b> Five model cyanobacterial strains were used to establish consortia: <i>Synechococcus elongatus</i> PCC 7942, <i>Synechococcus elongatus</i> UTEX 3055, <i>Synechocystis sp.</i> PCC 6803, <i>Anabaena/Nostoc sp.</i> PCC 7120, and <i>Leptolyngbya sp.</i> BL0902.<b>Sequencing and Analysis:</b> Genomes were obtained through metagenomic sequencing and analyzed using genome-resolved metagenomics, yielding 537 draft genomes.<b>Taxonomic Diversity:</b> The dataset covers a broad range of bacterial taxa, including novel species not previously represented in genomic databases.<b>Research Applications:</b> This dataset supports research in microbial ecology, cyanobacterial interactions, and biogeochemical cycling.
DOI: 10.6084/m9.figshare.26148823.v1
title: 537 draft genomes from Kust, et al. 2024

description: <b>Description:</b> This dataset comprises 537 draft genomes of bacterial species associated with cyanobacterial consortia from three distinct freshwater ecosystems. These consortia were established using five model cyanobacterial strains and bacterial inocula from Strawberry Creek, Eel River and Discovery Bay, CA. The genomes were derived from metagenomic sequencing and subsequent genome-resolved metagenomic analysis, representing a wide array of bacterial taxa. The dataset provides insights into the taxonomic diversity, genomic novelty, and community structure of these<i> in vitro</i> consortia. This resource is invaluable for studying microbial interactions, community dynamics, and the ecological roles of cyanobacteria-associated bacteria.<b>Key Highlights:</b><b>Sample Collection:</b> Bacterial inocula were collected from three freshwater ecosystems: UC Berkeley Strawberry Creek, Eel River, CA, and Sacramento River Delta, CA.<b>Cyanobacterial Hosts:</b> Five model cyanobacterial strains were used to establish consortia: <i>Synechococcus elongatus</i> PCC 7942, <i>Synechococcus elongatus</i> UTEX 3055, <i>Synechocystis sp.</i> PCC 6803, <i>Anabaena/Nostoc sp.</i> PCC 7120, and <i>Leptolyngbya sp.</i> BL0902.<b>Sequencing and Analysis:</b> Genomes were obtained through metagenomic sequencing and analyzed using genome-resolved metagenomics, yielding 537 draft genomes.<b>Taxonomic Diversity:</b> The dataset covers a broad range of bacterial taxa, including novel species not previously represented in genomic databases.<b>Research Applications:</b> This dataset supports research in microbial ecology, cyanobacterial interactions, and biogeochemical cycling.
DOI: 10.15468/dl.k46t7g
title: Occurrence Download

description: A dataset containing 1 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Continent is Asia",
 "Country is one of (China, Korea (Democratic People’s Republic of))",
 "Geometry POLYGON((122.17278 44.4432,123.38927 40.46195,126.63531 39.14521,130.75676 41.95956,129.36115 45.57675,125.13106 46.51677,122.17278 44.4432))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Hydropotes inermis Swinhoe, 1870",
 "Year 2000-2024"
 ]
}

 The dataset includes 1 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010084-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.6084/m9.figshare.26166073
title: <b>Temporal and Global Distribution of Macrolide Resistance in 4374 </b><b><i>Treponema pallidum</i></b><b> Specimens (1912-2023)</b>

description: The macrolide resistance mutations (A2058G, A2059G) metadata of 4374 <i>Treponema pallidum</i> specimens collected globally from 1912 to 2023.
DOI: 10.6084/m9.figshare.26166073.v1
title: <b>Temporal and Global Distribution of Macrolide Resistance in 4374 </b><b><i>Treponema pallidum</i></b><b> Specimens (1912-2023)</b>

description: The macrolide resistance mutations (A2058G, A2059G) metadata of 4374 <i>Treponema pallidum</i> specimens collected globally from 1912 to 2023.
DOI: 10.15468/dl.qzdpx9
title: Occurrence Download

description: A dataset containing 662 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is one of (Clusia weddelliana Planch. & Triana)"
 ]
}

 The dataset includes 662 records from 63 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010085-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.eftjrj
title: Occurrence Download

description: A dataset containing 345 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Egeria najas Planch."
 ]
}

 The dataset includes 345 records from 67 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0010086-240626123714530/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.6xkkqe
title: Occurrence Download

description: A dataset containing 2263 species occurrences available in GBIF matching the query:
{
 "and" : [
 "BasisOfRecord is Specimen",
 "Geometry POLYGON((-12.30747 45.40987,-8.94397 34.41381,3.8632 35.06064,16.1529 37.90668,34.91088 34.28445,52.63393 40.23525,54.96251 43.21066,83.16415 37.77731,91.1848 43.98685,90.53798 53.30115,86.65702 60.80434,68.38607 60.54561,58.29557 62.35673,50.14555 64.81467,41.34871 61.45117,27.11852 65.20277,18.83914 63.90911,17.67485 62.098,12.88833 61.45117,7.45499 56.27656,2.66847 52.91306,0.59862 50.58448,-12.30747 45.40987))",
 "HasCoordinate is true",
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 "TaxonKey is Ulmus laevis Pall."
 ]
}

 The dataset includes 2263 records from 110 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002658-240130105604617/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.3886/icpsr24052.v3
title: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2002
title: Version 3

description: These data contain records of statutes for each count of conviction for criminal defendants who were sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission (USSC) during fiscal year 2002. The data are one of two supplementary files that should be used in conjunction with the primary analysis file, which contains records for all defendants sentenced under the guidelines. These data can be linked to the primary analysis file using the unique identifier variable SEQ_NUM. The number of records for a defendant in the current data corresponds to the total number of counts of conviction for that defendant, and that total is recorded in the NOCOUNT variable. As an example, if a defendant has five counts of conviction (NOCOUNT=5), he or she will have five records in the current data. As it is possible for defendants to have multiple statutes applying to a single count of conviction, up to three statutes (STA1 - STA3) are recorded for each count of conviction. The data were obtained from the United States Sentencing Commission's Office of Policy Analysis' (OPA) Standardized Research Data File. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: 
DS1: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2002
description: Defendants sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission during fiscal year 2002.
DOI: 10.3886/icpsr24052
title: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2002
title: Archival Version

description: These data contain records of statutes for each count of conviction for criminal defendants who were sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission (USSC) during fiscal year 2002. The data are one of two supplementary files that should be used in conjunction with the primary analysis file, which contains records for all defendants sentenced under the guidelines. These data can be linked to the primary analysis file using the unique identifier variable SEQ_NUM. The number of records for a defendant in the current data corresponds to the total number of counts of conviction for that defendant, and that total is recorded in the NOCOUNT variable. As an example, if a defendant has five counts of conviction (NOCOUNT=5), he or she will have five records in the current data. As it is possible for defendants to have multiple statutes applying to a single count of conviction, up to three statutes (STA1 - STA3) are recorded for each count of conviction. The data were obtained from the United States Sentencing Commission's Office of Policy Analysis' (OPA) Standardized Research Data File. These data are part of a series designed by the Urban Institute (Washington, DC) and the Bureau of Justice Statistics. Data and documentation were prepared by the Urban Institute.
description: Datasets: 
DS1: Federal Justice Statistics Program: Statutes for Counts of Convictions for Defendants Sentenced Under the Sentencing Reform Act, 2002
description: Defendants sentenced pursuant to provisions of the Sentencing Reform Act (SRA) of 1984 and reported to the United States Sentencing Commission during fiscal year 2002.
DOI: 10.15468/dl.72v2g3
title: Occurrence Download

description: A dataset containing 14 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma letouzeyanum Desc."
 ]
}

 The dataset includes 14 records from 6 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002883-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.89t9tc
title: Occurrence Download

description: A dataset containing 61123 species occurrences available in GBIF matching the query:
{
 "DatasetKey" : [
 "is Base de datos de mamíferos de México depositados en colecciones de Estados Unidos y Canadá"
 ]
}

 The dataset includes 61123 records from 1 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002882-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.5284/1117725
title: Digital Data from a Watching Brief at Floating Landing Stages in Water Newton, Downham Market, and Earith, October 2011

description: This collection comprises digital data (images, site records and a vector graphic) from a watching brief carried out by Oxford Archaeology in October 2011 across three main sites: Water Newton, Downham Market, and Earith.
DOI: 10.15468/dl.69zs53
title: Occurrence Download

description: A dataset containing 2 species occurrences available in GBIF matching the query:
{
 "and" : [
 "HasGeospatialIssue is false",
 "OccurrenceStatus is Present",
 {
 "not" : {
 "DatasetKey" : [
 "is Global database of alien macrofungi"
 ]
 }
 },
 "TaxonKey is Paracremonium pembeum S.C.Lynch & Eskalen"
 ]
}

 The dataset includes 2 records from 2 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002884-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.15468/dl.ua3u65
title: Occurrence Download

description: A dataset containing 15 species occurrences available in GBIF matching the query:
{
 "TaxonKey" : [
 "is Cyphostemma leucotrichum (Gilg & M.Brandt) Desc."
 ]
}

 The dataset includes 15 records from 5 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002886-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.
DOI: 10.25421/yorksj.25686483
title: Within and between-session reliability of isometric strength and speed measures in adolescent female athletes: evidence of maturity specific differences in both reliability and performance

description: Based on the limited existing literature around the reliability of contemporary measures of explosive strength and sprint performance in adolescent females, this study has three clear aims: a) establish within- and between-session reliability of the IMTP, sprint performance and MSS in adolescent females; b) investigate whether the reliability of these performance markers is stable across different stages of biological maturation, and c) highlight maturity-specific differences in explosive strength and speed measures. It is anticipated that all protocols will provide at least moderate within and between-session reliability and that this will be stable across various stages of biological maturation
DOI: 10.25421/yorksj.25686483.v1
title: Within and between-session reliability of isometric strength and speed measures in adolescent female athletes: evidence of maturity specific differences in both reliability and performance

description: Based on the limited existing literature around the reliability of contemporary measures of explosive strength and sprint performance in adolescent females, this study has three clear aims: a) establish within- and between-session reliability of the IMTP, sprint performance and MSS in adolescent females; b) investigate whether the reliability of these performance markers is stable across different stages of biological maturation, and c) highlight maturity-specific differences in explosive strength and speed measures. It is anticipated that all protocols will provide at least moderate within and between-session reliability and that this will be stable across various stages of biological maturation
DOI: 10.5517/ccdc.csd.cc2759b2
title: CCDC 2060673: Experimental Crystal Structure Determination

description: Related Article: Yan-Yun Liu|2024|CSD Communication|||
description: Related Article: Yan-Yun Liu, Ming Hu, Jin-Heng Li|2024|Org.Chem.Front.|11|5806|doi:10.1039/D4QO01307G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.5517/ccdc.csd.cc2f82c5
title: CCDC 2242086: Experimental Crystal Structure Determination

description: Related Article: wang hong|2023|CSD Communication|||
description: Related Article: Shugao Zhu, Hong Wang, Shihan Liu, Rongjing Yu, Yufeng Ma, Rui Zhang, Yuxuan Fang, Yu Lan, Ruwei Shen|2024|Org.Chem.Front.|11|5884|doi:10.1039/D4QO01209G
description: An entry from the Cambridge Structural Database, the world’s repository for small molecule crystal structures. The entry contains experimental data from a crystal diffraction study. The deposited dataset for this entry is freely available from the CCDC and typically includes 3D coordinates, cell parameters, space group, experimental conditions and quality measures.
DOI: 10.15468/dl.gfd7k5
title: Occurrence Download

description: A dataset containing 1142 species occurrences available in GBIF matching the query:
{
 "and" : [
 "Geometry POLYGON((-123.57745 41.86861,-120.84682 41.86805,-117.65672 42.01509,-117.70756 44.5729,-117.71772 45.54147,-117.46989 46.17056,-121.17663 45.64853,-121.69765 45.71103,-121.97523 45.60902,-122.68847 45.73675,-123.13652 46.12263,-123.93509 46.12895,-123.98233 44.85702,-124.11069 44.40658,-124.17437 43.64153,-124.42099 43.15642,-124.53998 42.81426,-124.33813 42.52505,-124.49111 42.31692,-124.20937 41.92954,-123.57745 41.86861))",
 "HasGeospatialIssue is false",
 "TaxonKey is Castor canadensis Kuhl, 1820"
 ]
}

 The dataset includes 1142 records from 12 constituent datasets; see https://api.gbif.org/v1/occurrence/download/0002887-241007104925546/datasets/export for details.
 
Data from some individual datasets included in this download may be licensed under less restrictive terms.