cometadata/datacite-titles-descriptions-related-identifiers huggingface dataset:
DOI: 10.6084/m9.figshare.11316317.v1
title: Gene database of Pseudomonas syringae pv. DC3000

description: <i>Pseudomonas syringae</i> pv. DC3000 is a Gram-negative, rod-shaped plant pathogen. Able to infect a variety of plant species, the bacterium uses its Type III secretion system to inject effector proteins into plant cells; thereby, resulting in pathogenesis. Given its importance to studying plant-microbe interactions, <i>P. syringae</i> pv. DC3000 (NCBI Reference Sequence: NC_004578.1) has attracted much research attention, especially in areas seeking to understand plant pathogenesis mechanisms, as well as methods for controlling <i>P. syringae</i> pv. DC3000 infections. Using an in-house MATLAB algorithm, the annotated genome sequence of <i>P. syringae</i> pv. DC3000 was parsed and help create a gene database comprising gene names, gene functions and gene sequence. The database should find use in the phylogenetic analysis of genes important to <i>P. syringae</i> plant pathogenesis as well as studies aiming to understand how gene knockouts help ameliorate or activate plant pathogenesis by this important plant pathogen. <br><br>
DOI: 10.6084/m9.figshare.12162570.v1
title: GTT-1-protein-057.dcd

description: Trajectories dataTrajectories of WW domain
DOI: 10.6084/m9.figshare.20216858.v1
title: RNA-Seq counts datasets

description: Processed gene expression profiles of tissue types from eight species. The genome assembly (FASTA file), GTF annotation, and transcriptomic data were obtained from Ensembl v94. The raw RNA-Seq FASTQ files for eight species were collected from NCBI GEO and EBI ArrayExpress. Reads were mapped to the corresponding genome using STAR (v2.7.1a) after trimming adapters using Cutadapt (v1.16). The library preparation protocol strand type of each library was inferred using the infer_experiment.py module in RSeQC (v4.0). Genes annotated in the GTF files were quantified using HTSeq-count (v0.13.5).
DOI: 10.17632/3zb47wv49k
title: Docking information and results

description: Streptozotocin (STZ) induces hyperglycaemia associated with inflammatory disorders and is currently found in the methanolic extract from leaves of Onopordum acanthium (OAE). OAE has been discovered to treat diabetic complications. The objective of this study is to evaluate the ameliorative role of OAE on pancreatic islets injury and myocardial inflammation in diabetic rats. The steam extract of OAE contains six compounds (catechin, kaempferol, syringic acid, p-coumaric acid and epicatechin). The binding site affinity was done between extract compounds with antidiabetic receptors: insulin-like growth factor 1 kinase (PDB ID: 1K3A), glycogen phosphorylase (PDB ID: 1NOI), α-amylase, α-glucosidase (PDB ID: 1OSE), sulphonyl urease (PDB ID: 2E5Z) and glucagon-like peptide-1 (PDB ID: 3IOL). The energy required by syringic acid to bind with insulin-like growth factor 1 kinase (PDB ID: 1K3A) was the lowest at −5.2 kcal/mol, followed by the free energy required by p-coumaric acid (−5.3 kcal/mol), gallic acid (−5.8 kcal/mol), epicatechin (−7.0 kcal/mol), kaempferol (−7.1 kcal/mol) and glibenclamide (−8.0 kcal/mol). All compounds showed binding values of energy from −8.8 to −4.6 kcal/mol. The highest energy was found for catechin (Table 6) (Figure 8) and epicatechin binding with α-glucosidase (PDB ID: 1UOK) and α- amylase (PDB ID: 1OSE) of −8.4 kcal/mol and −7.7 kcal/mol, respectively. Amino acids involved in the formation of a catechin complex with α-glucosidase were GLU387 (H-bond), pHE163, ALA143, LYS293, ASP 285 (H-bond), GLN 330 (H-bond) and ARG415.  
Kaempferol showed the highest binding site energy interaction with glycogen phosphorylase (−8.1 kcal/mol) (Table 6) (Figure 8) compared to the rest of the naturally extracted compounds after glibenclamide (−8.8 kcal/mol). Amino acids involved were GLU124, 654, ARG93, LYS655, 544 and PRO658. Similar binding site energy (−6.0 kcal/mol) has been observed for the interaction of catechin, kaempferol, epicatechin and glibenclamide with sulphonyl urease (PDB ID: 2E5Z). The amino acids involved in the interaction of glibenclamide with sulphonyl urease are ALA 48, SER 3, ARG 47 and GLY 7. Glucagon-like peptide-1 (PDB ID: 3IOL) interaction with glibenclamide showed the highest binding site energy of (−7.6 kcal/mol) followed by kaempferol (−6.5 kcal/mol), catechin and epicatechin (−6.3 kcal/mol), respectively (Table 6). selective NSAID for COX-1, COX-2) 1CVU, 1IQM, 3FCU, 3LN1 and 3N8Y.  Kaempferol has shown the highest binding site of −8.5 and −9.3 kcal/mol with the receptors of integrin αIIbβ3 (PDB ID: 3FCU) and COX-1(PDB ID: 3N8Y) respectively, with amino acids of PHE171, 419, 21, ALA359, ILE360, LEU421, ARG422 and SER420 in 3FCU and CYS36, 47, ILE46, GLY45, PRO153, GLN461, LEU152, GLU465, GLY45 in COX-1 (PDB ID: 3N8Y) ().
The interaction of epicatechin with amino acid residue in COX-2 (PDB ID:3LN1) ar
DOI: 10.6084/m9.figshare.24453883.v1
title: Number of adults to be covered by PC for strongyloidiasis at country level, with prevalence threshold set at 20% from Progress towards the implementation of control programmes for strongyloidiasis in endemic areas: estimation of number of adults in need of ivermectin for strongyloidiasis

description: The World Health Organization (WHO) has started a process to issue guidelines for the control of strongyloidiasis. The guidelines might recommend to implement preventive chemotherapy (PC) at community level (i.e. to all individuals above 5 years of age), over a defined prevalence threshold. We previously estimated the number of school-age children (SAC) who would need PC. Here we estimate the number of people above 15 years of age who might be included in PC for strongyloidiasis. Based on previous <i>Strongyloides</i> prevalence estimates and on countries' age distribution, we retrieved the number of adults in need of PC. We then subtracted the number of people already involved in ivermectin mass distribution for the elimination of onchocerciasis and lymphatic filariasis and people living in countries where <i>Loa loa</i> is endemic. The number of adults to be involved in PC was estimated from 994.2 (95% confidence interval [95% CI]: 571.6–1292.6), to 562.3 (95% CI: 303.1–790.1) million people, when the strongyloidiasis prevalence threshold for implementing PC was set to 10% and 20%, respectively. Estimates at country level are also provided.These estimates might help endemic countries wishing to implement PC for strongyloidiasis to allocate resources to include adults in addition to SAC in control programmes.This article is part of the theme issue ‘Theo Murphy meeting: Strongyloides: omics to worm-free populations’.
DOI: 10.6084/m9.figshare.28280519.v1
title: Raw data for cytokine ELISA and antigen recall assays

description: Raw data for cytokine ELISA and antigen recall assays
DOI: 10.6084/m9.figshare.3562893.v1
title: Supplement 1. The SAS code for the selection analyses in Case Studies 1 and 2.

description: File List Case1.sas (MD5: 8fec998d9e95527557a56268966f778e) Case2.sas (MD5:e0cb1e36b7313b9fd79e0418c76bf01a ) Description Case1.sas is the SAS code used to analyze the data presented in Case Study 1. This uses the ANCOVA approach outlined in the manuscript. Case2.sas uses an a priori contrast approach to analyze the data presented in Case Study 2.
DOI: 10.6084/m9.figshare.5808387.v1
title: Figure 5g.xlsx

description: Raw data for Figure 5g.
DOI: 10.6084/m9.figshare.5876064.v1
title: Multiresolution Consensus Clustering in Networks - Network Data Sets

description: Network data sets used in:<br>Multiresolution Consensus Clustering in Networks, Scientific Reports, https://doi.org/10.1038/s41598-018-21352-7<br><br><b>Data Sets:</b><br>Each '.mat' file contains the adjacency matrix 'A', reference partitions 'S' and a label for the reference partition 'gtlabels'. Some files have additional information.<br>Zachary Karate Club<i>File</i>: 'karate.mat'<i>Citation</i>: Zachary, W. W. An information flow model for conflict and fission in small groups. <i>Journal of Anthropological Research</i> <b>33</b>, 452–473 (1977).<i>Source: </i>http://www-personal.umich.edu/~mejn/netdata/<br>College Football<i>File:</i> 'football.mat'<i>Citations</i>: Girvan, M. & Newman, M. E. J. Community structure in social and biological networks. <i>Proceedings of the National Academy of Sciences</i> <b>99</b>, 7821–7826 (2002).Evans, T. S. Clique graphs and overlapping communities. <i>Journal of Statistical Mechanics: Theory and Experiment</i> <b>2010</b>, P12037 (2010).<br><i>Source: </i>https://doi.org/10.6084/m9.figshare.93179.v2<br>Political Blogs<i>File: </i>'polblogs.mat'<i>Citation</i>: Adamic, L. A. & Glance, N. The political blogosphere and the 2004 U.S. election: Divided they blog. In <i>Proceedings of the 3rd International Workshop on Link Discovery</i>, LinkKDD ’05, 36–43 (ACM, New York, NY, USA 2005).<i>Source</i>: http://www-personal.umich.edu/~mejn/netdata/<br>Political Books<i>File</i>: 'polbooks.mat'<i>Citation</i>: Krebs, V. Books about US politics.<i>Source</i>: http://www-personal.umich.edu/~mejn/netdata/<br>Human Structural Brain<i>File:</i> 'DSI_network.mat'<i>Citation: </i>Hagmann, P. et al. Mapping the structural core of human cerebral cortex. <i>PLOS Biology</i> <b>6</b>, 1–15 (2008).<i>Raw Data File: '</i>DSI_release2_2011.mat'<br>Rat Structural Brain<i>File: </i>'rat_cortex.mat'<i>Additional Data:</i> has extra variable 'labels' which contain the abbreviated names of the anatomical regions<i>Citation: </i>Bota, M., Sporns, O. & Swanson, L. W. Architecture of the cerebral cortical association connectome underlying cognition. <i>Proceedings of the National Academy of Sciences </i><b>112</b>, E2093–E2101 (2015).<br>
DOI: 10.6084/m9.figshare.9762878.v2
title: Coordination pattern of the thigh, pelvic, and lumbar movements during the gait of patients with hip osteoarthritis

description: Hip and relevant joint movement has been reported during gait in patients with hip osteoarthritis; however, there are limited reports on segment movement and their coordination pattern. It is important to investigate the relationship among relevant segment movements, focused on the time series data, in patients with osteoarthritis. This study aimed to quantify and assess the coordination pattern of lumbar, pelvic, and thigh movements during gait in patients with hip osteoarthritis and in a control group.<i> </i>An inertial measurement unit was used to measure the lumbar, pelvic, and thigh angular velocities during gait of 11 patients with hip osteoarthritis and 11 controls. The vector coding technique was applied, and the coupling angle and the appearance rate of coordination pattern of lumbar, pelvic, and thigh movements in each direction were calculated and compared with the control group.<i> </i>Compared with the control group, with respect to the lumbar/pelvic segment movements, the patients with hip osteoarthritis spent more rate in anti-phase and lesser rate in in-phase lateral tilt movement. With respect to the pelvic/thigh segment movements, the patients with hip osteoarthritis spent more rate within the proximal- and in-phases for lateral tilt movement. Further, patients with osteoarthritis spent lesser rate in the distal-phase for anterior/posterior tilt and rotational movement. Patients with hip osteoarthritis could not move their pelvic and thigh segments separately, which indicates the stiffness of the hip joint. However, our results suggested that their thoracic movement (especially in the lateral tilt movement) could compensate for their inability to move the pelvic and thigh segments separately. To maintain the gait ability, maintaining the spinal mobility is also considered important.
DOI: 10.17632/4sccxmrfzm
title: Supplementary Images & Discussion - Tolerated, Effective, Successful: Low Dose Oral Minoxidil for Treating Alopecia, A 3-Year North American Retrospective Case Series

description: Supplementary discussion includes further description of LDOM (low-dose oral minoxidil) tolerance and side-effects, as well as potential mechanism of action and therapeutic efficacy of systemic minoxidil at the crown in contrast to the bitemporal scalp sites, particularly in male patients. Serial photography submitted with patients' expressed written consent. Images depict clinically notable hair growth in a female patient (global scalp regrowth) and male patient (crown regrowth).
DOI: 10.17632/72r3bvdd3r
title: DTM Central Kalimantan and East Sumatra (Vernimmen et al. 2019)

description: DTM's for Central Kalimantan and East Sumatra at 500 m spatial resolution as published in Vernimmen et al. 2019: Creating a lowland and peatland landscape Digital Terrain Model (DTM) from interpolated partial coverage LiDAR data for Central Kalimantan and East Sumatra, Indonesia Contact us on related products.
DOI: 10.6084/m9.figshare.17079152.v1
title: Additional file 3 of miR-30b-5p inhibits proliferation, invasion, and migration of papillary thyroid cancer by targeting GALNT7 via the EGFR/PI3K/AKT pathway

description: Additional file 3. The raw data of CCK8 assay.
DOI: 10.6084/m9.figshare.28334858.v1
title: Consent Form and Robotfoto

description: Consent Form and Robotfoto
DOI: 10.17632/7gn296r48y
title: Supplemental Dataset 1. Uncropped images from western and northern blots

description: All uncropped images from western and northern blots used in this study are compiled in a single document. Dashed boxes indicate the region of the blots that was shown in the corresponding main or supplemental figure. Antibodies and probes that were used are indicated.
DOI: 10.6084/m9.figshare.27629526.v1
title: Hypertension Dataset

description: Hypertension Data Set
DOI: 10.6084/m9.figshare.28094282.v1
title: data for paper TPP

description: Association of gene TRH, PRL and PRLR with milk performance, reproductive traits and heat stress response in dairy cattle
DOI: 10.6084/m9.figshare.28334498.v1
title: <b>农村</b><b> </b><b>Revitalization</b>

description: <b>数字乡村 and乡村</b><b> </b><b>Revitalization</b>
DOI: 10.17632/w43f4vpvtg
title: aphasia-stroop

description: This is the raw functional near-infrared data of 15 patients with aphasia and 15 healthy control groups.
DOI: 10.6084/m9.figshare.25772541.v1
title: Photocatalytic Oxidative Activation Strategies for [2σ-2π] Cycloadditions with Bicyclo[1.1.0]butanes

description: cartesian coordinates and energies
DOI: 10.17632/k85ygcx787
title: hESC- and hiPSC-derived Schwann Cell Antibody Array

description: H1, H7 and H9 hESCs and iPSCs generated from GM01582, GM02623 and GM08398 fibroblasts were differentiated into Schwann cells using an established protocol. Protein expression was quantified in passage three hESC- and iPSC-derived Schwann cells with the Human Antibody Array 1000 Membrane Kit (RayBiotech).
DOI: 10.17632/mktjr43v54
title: Data for: Women's Political Participation and Intrahousehold Empowerment: Evidence from the Egyptian Arab Spring

description: This directory contains replication material for the article "Women's Political Participation and Intrahousehold Empowerment: Evidence from the Egyptian Arab Spring". It includes: - The STATA do file “Tables.do” which produces tables of estimates (the path and relevant user just need to be indicated at the top of the dofile) - The usable datasets: “women_n2008-2014.dta” for main estimations (excluding border governorates), “women_n2000-2008.dta” for placebo checks, and “women_n_allgov2008-2014.dta” for sample with border governorates of Egypt. Source data can be made available upon authorization of data provides and the authors can provide dofile for the generation of usable datasets.
DOI: 10.6084/m9.figshare.11301752.v1
title: Data from Gómez-Catasús et al. (2019) Scientific Reports

description: We present here the data employed in the article:<br>Gómez-Catasús, J., Garza, V., Morales, M.B. and Traba, J. Hierarchical habitat-use by an endangered steppe bird in fragmented landscapes is associated with large connected patches and high food availability. Scientific Reports.<br>We upload the following files. For any further queries please contact julia.gomez@uam.es<br>1) "Gomez-Catasus_et_al.2019_Scientific_Reports.csv"This is the dataset.<br>2) "2019-12-01_Description_dataset.rtf"An explanation of the variables included in the file "Gomez-Catasus_et_al.2019_Scientific_Reports.csv"
DOI: 10.6084/m9.figshare.1233597.v2
title: TRASTORNOS DEL SUEÑO EN PERSONAL DE EMERGENCIA DEL HOSPITAL ANIBAL GONZALEZ ALAVA

description: TRABAJO DE MODULO 5 DE MAESTRIA DE SALUD OCUPACIONAL
DOI: 10.6084/m9.figshare.5123416.v1
title: Supplementary Material for: Chronic Reduction of Nitric Oxide Level in Adult Spontaneously Hypertensive Rats Induces Aortic Stiffness Similar to Old Spontaneously Hypertensive Rats

description: <b><i>Introduction:</i></b> Age and hypertension are two major determinants of arterial stiffness, as well as endothelial dysfunction. The present study was designed to test whether a chronic reduction of endogenous nitric oxide (NO) produces arterial stiffening close to that observed in old spontaneously hypertensive rats (SHR), and also to study the effect of an acute or a chronic decrease in blood pressure (BP) on aortic distensibility. <b><i>Methods:</i></b> BP, aortic stiffness, endothelial dysfunction and remodelling were measured in male adult (20-week-old) SHR, in adult SHR treated with a nonspecific NO synthase inhibitor <i>L</i>-NAME (SHR/<i>L</i>-NAME) for 2 weeks, in adult SHR/<i>L</i>-NAME cotreated with perindopril (1 mg/kg/day) and in old SHR (55-week-old). Age-matched WKY were used as a normotensive group. <b><i>Results:</i></b> Aortic endothelial dysfunction, remodelling and stiffening appeared in old SHR. Reduction of NO production in adult SHR caused similar alterations. Acute decreases in BP in SHR/<i>L</i>-NAME did not improve isobaric aortic distensibility but a chronic reduction of BP prevented endothelial dysfunction, aortic remodelling and aortic wall stiffening. <b><i>Conclusion:</i></b> NO reduction in adult SHR induces aortic alterations similar to those observed during aging, which supports the major role of NO in the development of arterial stiffening. These aortic alterations can be prevented by angiotensin-converting enzyme inhibitor treatment.
DOI: 10.17632/c2gw6nmj75
title: Comparative data on corrosion protection 

description: Specifications table/Data accessibility
DOI: 10.6084/m9.figshare.14601726.v1
title: Participation in early childhood development programs promoted by civil societies in Mexico: a behavioral economics analysis

description: Important Notice: Under request of PLos one and in order to contribute to transparency and replicability of research, the authors of the study entitled “A behavioral economics analysis of the participation in early childhood development social programs promoted by civil societies in Mexico”, made the qualitative data available (Interview guides applied and focus groups). Any other use than exploring or replicating the results of the above-mentioned paper is not authorized and shall not be used without previous authorization of the investigators. If you are interested in analyzing this database for original research purposes please contact Edson Serván Mori (eservan@insp.mx).
DOI: 10.6084/m9.figshare.25471975.v1
title: metadata_fish.csv

description: Metadata for the fish.csv dataset
DOI: 10.6084/m9.figshare.26318854.v1
title: LC-ESI-MS/MS methods for the quantification of hydrazine mono lactose adduct and hydrazine di lactose adduct in isosorbide dinitrate and hydralazine hydrochloride tablets

description: Isosorbide dinitrate and hydralazine hydrochloride tablets treat heart failure in addition to conventional therapy, prolong hospitalization for heart failure, and enhance patient-reported functional status. LC-MS/MS methods developed and validated separately for the quantification of hydrazine mono-lactose adduct and hydrazine di-lactose adduct impurities in the isosorbide and hydralazine hydrochloride tablets. Separation of hydrazine mono-lactose adduct impurity achieved on ZIC-HILIC (100 × 4.6 mm, 5 µm) column with 0.1% formic acid in water as mobile phase A and acetonitrile as mobile phase B. The HPLC method gradient elution is; Tmin/% of B: 0/90, 15/40, 15.1/90, and 20/90. The flow rate is 1.0 mL per minute, and the injection volume is 20 µL. Separation of hydrazine di-lactose adduct impurity achieved on Inertsil HILIC (150 × 4.6 mm, 5 µm) column with 10 Mm ammonium acetate in water as mobile phase A and acetonitrile as mobile phase B. The HPLC method gradient elution is; Tmin/% of B: 0/90, 15/40, 15.1/90, and 18/90. The flow rate is 1.0 mL per minute, and the injection volume is 40 µL. Method validation has demonstrated both methods are specific, sensitive, linear, precise, accurate, stable and robust.
DOI: 10.17632/k333y99gns
title: Data for Joint Lagrangian relaxation and dynamic programming approach for a multi-period multi-product location-inventory problem

description: Parameters, results and graphs used in Joint Lagrangian relaxation and dynamic programming approach for a multi-period multi-product location-inventory problem
DOI: 10.17632/n2j4yfnt3x
title: Adversarial Attacks for Low Light Image Enhancement

description: This dataset is an image repository that evaluates adversarial robustness by introducing 12 adversarial examples, each leveraging a known adversarial attack or noise perturbation. The repository contains a total of 4970 digital images through the application of AEs to five different image databases (i.e., MEF, LIME, LOLv1, LOLv2-R, LOLv2-S) that include pictures of landscapes, objects, or locations with low, normal, or high illumination conditions. We incorporate original images from the five databases utilized alongside the adversarial examples to facilitate easy access and distribution of this dataset.
DOI: 10.17632/ngshvpwrt8
title: Transcription dynamics regulate poly(A) tails and expression of the RNA degradation machinery to balance mRNA levels

description: Original imaging data of the manuscript entitled "Transcription dynamics regulate poly(A) tails and expression of the RNA degradation machinery to balance mRNA levels" to be published soon in Molecular Cell
DOI: 10.6084/m9.figshare.23621232.v2
title: Supplementary Data for " <strong>Allanite geochronology in the Mount Isa Inlier</strong>"

description: Supplementary data for "Allanite geochronology in the Mount Isa Inlier", by A.D. Burnham, R. Chandler, Y. Amelin and J. Mavrogenes. Data include: SHRIMP U-Th-Pb data, LAICPMS U-Th-Pb data, TIMS U-Th-Pb data, LA-MC-ICPMS Nd isotope data, EPMA data, LAICPMS trace element data.
DOI: 10.17632/vwz5w52sjw
title: mTORC1 regulates the pyrimidine salvage pathway by controlling UCK2 turnover via the CTLH-WDR26 E3 ligase. Pham et al.

description: Raw data file for metabolomics experiment in Table S2.
DOI: 10.6084/m9.figshare.13048043.v1
title: PETs datafiles

description: csv datafiles for PETs study 1, 2, 3.
DOI: 10.6084/m9.figshare.27308826.v5
title: <b>Functional diversity explains ecosystem carbon storage in subtropical forests</b>

description: The research site was located in Dianjiang County of Chongqing (29°38′-30°31′ N, 107°13′-107°40′ E), with a typical subtropical monsoon climate; it is a biodiversity hotspot area. The region has an altitude ranging from 320 to 1,183 m, a mean annual temperature of 17.1 °C, and a mean annual precipitation of 1,200 mm. The forest types at the study site included coniferous forest, coniferous and broad-leaved mixed forest, and broad-leaved forest. Fifty-four plots were chosen for the study site.
DOI: 10.6084/m9.figshare.28781687.v1
title: Synthetic Pavement Crack Dataset for Object Detection

description: A dataset containing 3,346 synthetically generated RGB images of road segments with cracks. Road segments and crack formations created in Blender, data collected in Microsoft AirSim. Data is split into train (~70%), test (~15%), and validation (~15%) folders. Contains ground truth bounding boxes labelling cracks in both YOLO and COCO JSON format.
DOI: 10.6084/m9.figshare.7162025.v1
title: People from Ibiza dataset

description: 120 samples from Catalonia, Valencian Community, and Balearic Islands.<br>